BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781102|ref|YP_003065515.1|
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (497 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score =  430 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 497/497 (100%), Positives = 497/497 (100%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI
Sbjct: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV
Sbjct: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ
Sbjct: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK
Sbjct: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF
Sbjct: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV
Sbjct: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP
Sbjct: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK
Sbjct: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480

Query: 481 KMSVDCDIIREILGLIL 497
           KMSVDCDIIREILGLIL
Sbjct: 481 KMSVDCDIIREILGLIL 497


>gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 500

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 380/497 (76%), Positives = 440/497 (88%), Gaps = 3/497 (0%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQDLIYKDFPELINQLS FP+Q RER+I+++SSDSRHIQ GW+FVAIVGN+EDGH FI
Sbjct: 1   MKLQDLIYKDFPELINQLSRFPIQLRERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA+AQGA  IVVSS +  QDFS  ++++ PILVVDNTR+FLSL A+RLYGKHPE I AV
Sbjct: 61  PQAVAQGAGVIVVSSMHQSQDFSHVVKADIPILVVDNTRRFLSLVAARLYGKHPEKIFAV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASFVQQI Q +GLSSFQIGP S + S   +DNRLTTPSP+Y+A+AL+YL+S
Sbjct: 121 TGTSGKTSVASFVQQISQHAGLSSFQIGPISLMPSLQREDNRLTTPSPVYIAQALAYLAS 180

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG THVS+EASSHGLDQHRLDGIK IAGSFTN GRDHIDYH+TQQAYFNAKMRLFEELLP
Sbjct: 181 QGTTHVSIEASSHGLDQHRLDGIKFIAGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLP 240

Query: 240 KESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           K SPA+I  +D   +S +VM+RAHNAGCRVLSVGY+G FI LK +  I++KQQV+ISVEG
Sbjct: 241 KGSPAVICNNDDDSWSNKVMERAHNAGCRVLSVGYKGTFIRLKNLTQINDKQQVSISVEG 300

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           KDFDFLFPL G FQV NALV+AGLCIA GID  +V+E+LEK++V+PGRFEF+G NS+GGR
Sbjct: 301 KDFDFLFPLQGAFQVSNALVSAGLCIATGIDVPVVIEYLEKVNVIPGRFEFIGNNSKGGR 360

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           IYVDYAHT NSLEM+L+N+R ITSGRIIVVFGCGGDRD+GKR IMGKIAL+LAD++IVTD
Sbjct: 361 IYVDYAHTPNSLEMVLRNLRNITSGRIIVVFGCGGDRDRGKRKIMGKIALELADLSIVTD 420

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSE+P+ IRAEII+G PGFIE+GNR EAIR AI MLNK+DVLVVAGKGHETV I+ N
Sbjct: 421 DNPRSENPQAIRAEIINGFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKGHETVQIIHN 480

Query: 478 GEKKMSVDCDIIREILG 494
           G+ KMSVDCD+IREIL 
Sbjct: 481 GKIKMSVDCDVIREILR 497


>gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium meliloti 1021]
 gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
 gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Sinorhizobium meliloti 1021]
 gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
          Length = 486

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 232/495 (46%), Positives = 313/495 (63%), Gaps = 12/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ DL   +FPEL  QL          +I  +++DSR ++ G +FVA+ G+K DG  +I
Sbjct: 1   MKITDLAGSNFPELSAQLK---GDAATIEIGGITADSRQVKPGDLFVAVAGSKADGAAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A+V  +    +       +  P+  + + R+FL+  AS  YG+ PE ++AV
Sbjct: 58  ADALSRGASAVVAGTGTPAE-------AGAPVFAISDPRRFLAKAASSFYGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SG S+  IG T  ++    +   LTTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVAPGRTEYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQRRLDGVELAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQ+ NALVAAGL ++ GI +      LE+L    GR E VG    G   Y
Sbjct: 291 YEIHVPLAGDFQIANALVAAGLAMSTGITAKAAFSALERLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L  +L+++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALANVLESVRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRAEI+    G  E G+R EAIR A+ ML   D L+VAGKGHE    V +  
Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRAAVGMLKTGDTLIVAGKGHEEGQTVGS-V 469

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ LG
Sbjct: 470 TLPFSDHAEVRKALG 484


>gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
 gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
          Length = 486

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 236/495 (47%), Positives = 319/495 (64%), Gaps = 12/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++DL   +FPEL  QL        E  I  +++DSR ++ G +FVA+ G K +G  +I
Sbjct: 1   MKIRDLAGTNFPELSAQL---QGNAAEIDIAGITADSRQVKPGDLFVAVAGTKANGSAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A++V+         +   +  P+  +   R+FL+  A+RL+G+ PE ++AV
Sbjct: 58  ADALSRGAAAVIVAEG-------SGADAGAPVFELSEPRRFLAQAAARLFGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SGL++  IG T   +    D   LTTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSAEAIAAARKAGHDVRTVGRNGDFISLKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ GI++ +    LEKL    GR E VG    G   Y
Sbjct: 291 FEIHVPLAGDFQVANALVAAGLAMSTGIEAKVAFSALEKLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L+++R  T+GR+I+VFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALENVLESVRPFTTGRVIIVFGCGGDRDKGKRPIMGQIAARLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IR+EI+ G  G  E  +R EAIRTA+ ML   D L+VAGKGHE    + +  
Sbjct: 411 PRSEIPETIRSEIMAGAKGATEIADRAEAIRTAVGMLKAGDTLIVAGKGHEEGQTIGS-V 469

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ LG
Sbjct: 470 TLPFSDHAEVRKGLG 484


>gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
          Length = 490

 Score =  368 bits (945), Expect = e-99,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +          E +I  V+SDSR ++ G++F A+ G K DG  F+
Sbjct: 3   MKLKEI--ALFKELASG------NAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV      + D      +  P+L VD+ R  L++ A++ YGK P+ ++AV
Sbjct: 55  ADAVKRGASAIVAGKDTVIAD------AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+ 
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAD 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL AG+FTNLGRDH+DYH T + Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII++DD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFSDDHFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+AIVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+   PG  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAAPGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
 gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
          Length = 487

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 231/497 (46%), Positives = 315/497 (63%), Gaps = 13/497 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL  Q+        + +I  +S+DSR +  G  FVA+ G K DG  FI
Sbjct: 1   MNLRDIAGNTFPELNGQVG---GALGDLEITGLSADSRKVAPGMAFVAVAGTKADGASFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA  ++  +  ++        +  P+L VD  R+FL++ ASR YGK PE ++AV
Sbjct: 58  ADAVSRGASVVIAGNGAAV--------TGAPLLTVDEPRRFLAVAASRFYGKQPETMVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G  +  IG T  +S    D   LTTP P+ L + L+ L+ 
Sbjct: 110 TGTAGKTSVASFTRQIWAYAGHPAAMIGTTGVVSPTRNDYGSLTTPDPVSLHQLLAALAD 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T + Y  AKMRLF +LLP
Sbjct: 170 EGVTHAAMEASSHGLDQFRLDGVRLAAAAFTNLGRDHMDYHPTVEDYMAAKMRLFRDLLP 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S++ +  A + G  + +VG +G F+ LK+V    +KQ   + +    
Sbjct: 230 KGSPAVIFADDPWSEQAIAAARDTGQDIRTVGRKGDFLALKRVEHFRHKQIAEVHIGDDI 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL I+ G+ + + +  LEKL    GR E VG    G   Y
Sbjct: 290 FEIHIPLAGDFQVANALVAAGLAISTGVAAPVAMAALEKLVGAAGRLELVGHTHDGALAY 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GRIIVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 350 VDYAHKPDALENVLTSVRPFTTGRIIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E  +R EAIR A+ ML   D L+VAGKGHE    + +  
Sbjct: 410 PRSEEPAAIRAEIMAAASCATEIADRAEAIREAVSMLTSGDTLIVAGKGHEEGQTIGS-V 468

Query: 480 KKMSVDCDIIREILGLI 496
                D   +R+ L  +
Sbjct: 469 TLPFSDHAELRKALEEV 485


>gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
 gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
          Length = 495

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 187/475 (39%), Positives = 270/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR ++ G++F A+ G++  G  FIP A+ +GA AI+  
Sbjct: 10  LSQLGLTARGGADPQIRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S+  ++VV++ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+
Sbjct: 70  AAGAGIAAKVLDESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVR 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 130 QIWTELGHEAVNMGTTGIEGAWSYPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 189

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A+I  +D    
Sbjct: 190 DQRRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRGA 249

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  V+SVG     + L  +      Q +  +   K +     L G FQ  N
Sbjct: 250 EMRAVAAARGQEVISVGRGLGDLSLLGLRYDGTGQDMRFAWHDKPYQVRLNLIGGFQAEN 309

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V E L  L  V GR +       G  ++VDYAHT +++   +K
Sbjct: 310 VLLACGLAIAGGEDPERVFETLPHLTTVRGRMQLAAERDNGSAVFVDYAHTPDAVASAIK 369

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 370 ALRPHVLGRLIAIVGAGGDRDTSKRPLMGQAAHENADVVIVTDDNPRSEDPAAIRAAVKG 429

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G PG IE G+R EAI    +ML   D L++ GKGHET   V +       D +  
Sbjct: 430 GAPGCIEIGDRAEAILRGADMLGPGDALIICGKGHETGQTVGD-TVLPFNDVEQA 483


>gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CNPAF512]
          Length = 486

 Score =  368 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 237/495 (47%), Positives = 313/495 (63%), Gaps = 14/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P+   +  I+ +SSDSR +  G  FVA+ G K DG  FI
Sbjct: 1   MKLRDLAGDQFPELEAQLEG-PVGLLD--ISGLSSDSRKVAPGNAFVAVAGTKADGAGFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA   + S                P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 58  ADAAARGAVVAIASQPVDAA---------IPVLAVKEPRRFLSIAAARFYGRQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 169 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +K A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 229 KGAPAVIFADDPWSAQAVKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+     +  LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVAPKAAMAALEKLVGASGRLELVGHTKDGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IR+EI+       E G+R  AIR A+ ML   D L+VAGKGHE    + +  
Sbjct: 409 PRSEEPAAIRSEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTIGS-V 467

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ L 
Sbjct: 468 TLPFSDHAEVRKALE 482


>gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium medicae WSM419]
 gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae
           WSM419]
          Length = 486

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 232/495 (46%), Positives = 309/495 (62%), Gaps = 12/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++DL    FPEL  QL          +I  +++DSR ++ G +FVA+ G K DG  +I
Sbjct: 1   MKIRDLAGSSFPELSAQLK---GDAANIEIGGITADSRQVRPGDLFVAVAGAKADGSAYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA A+V          SA   +   +  +   R+FL+  +S  +G+ PE ++AV
Sbjct: 58  TDALSRGASAVVA-------GTSARAEAGINVFTISEPRRFLAKASSSFFGRQPETMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   SG S+  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 111 TGTAGKTSVASFTRQIWAHSGFSAAMIGTTGVVSPGRAEYGSLTTPDPVSLHKLLAELAD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+ L A +FTNLGRDH+DYH T + Y  +KMRLF  LLP
Sbjct: 171 EGVTHAAMEASSHGLDQQRLDGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLP 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +  A  AG  V +VG  G FI LK+V    +KQ   + V    
Sbjct: 231 KGSPAVIFADDQWSADAIAAARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDI 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQV NALVAAGL ++ GI +      LE+L    GR E VG    G   Y
Sbjct: 291 YEIHVPLAGDFQVANALVAAGLAMSTGISAKAAFSALERLQGASGRLELVGQTKDGALAY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L  +L+++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 351 VDYAHKPDALSNVLESLRPFTTGRVVVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRAEI+    G  E G+R EAIR A+ ML   D L+VAGKGHE    V +  
Sbjct: 411 PRSEVPEVIRAEIMAAAKGATEIGDRAEAIRVAVGMLKTGDTLIVAGKGHEEGQTVGS-V 469

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ LG
Sbjct: 470 TLPFSDHAEVRKALG 484


>gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 493

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 179/475 (37%), Positives = 264/475 (55%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL++      + +I  ++ DSR ++ G++F A+ G +  G  FI  A+  GA AI+  
Sbjct: 8   LSQLALTARGGADPEIAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++VV + R+ L+  A+  +G  P  ++AVTGT+GK+S+++FV+
Sbjct: 68  AEGARIAADELAASDAALVVVQDPRQTLAYTAALWFGAQPRTMVAVTGTNGKTSISTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    ++      TTP PI L + L+  +  GVTH ++EASSHGL
Sbjct: 128 QIWTELGHMAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  F+N  +DH+DYH T +AYF AK  LF+ +L ++  A+I  DD    
Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +   A   G  VL+VG     + L         Q +  +  GK F     L G FQ  N
Sbjct: 248 AIRDIAQARGQTVLTVGSGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G ++  V + L  L  V GR +   T S G  ++VDYAHT +++   L+
Sbjct: 308 VLLACGLVIASGDEAEHVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALQ 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MG+ A + ADI  VTDDNPRSEDP  IRA ++ 
Sbjct: 368 ALRPHVMGRLIAIVGAGGDRDSTKRPLMGRAAAENADIVFVTDDNPRSEDPAAIRAAVMA 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E  +R EAI   I+ L   D L++AGKGHET  IV + +     D +  
Sbjct: 428 GAPDATEVADRAEAILRGIDALQPGDALLIAGKGHETGQIVGD-QVLPFDDVEQA 481


>gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CFN 42]
 gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CFN 42]
          Length = 506

 Score =  366 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 237/495 (47%), Positives = 314/495 (63%), Gaps = 14/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR+++ G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPELEAQLEG-PAGLLD--ISGLSSDSRNVEPGNAFVAVTGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S                P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIASQPVDAA---------IPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + ++ A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 249 KGAPAVIFADDPWSPQAVQAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEI 308

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G++    +  LEKL    GR E VG    G   Y
Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKAAMAALEKLVGASGRLELVGHTKDGALAY 368

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E G+R  AIR A+ ML   D L+VAGKGHE    +  G 
Sbjct: 429 PRSEEPAAIRAEIMTAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTIG-GV 487

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ L 
Sbjct: 488 TLPFSDHAEVRKALE 502


>gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 493

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 187/475 (39%), Positives = 272/475 (57%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +         +  +S DSR +Q G +F A+ G+K  G  FI  A+  GA A++  
Sbjct: 8   LSSLGLTAKGGGNPPVTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A  ++   ++V D  R+ LS  A+  YG  P+ ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGATLAADALAQAEVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GL++  +G T    ++      TTP PI L + L++ S+ G+TH ++EASSHGL
Sbjct: 128 QIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T  AYF+AK  LF  +LP++  A+I  DD    
Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGV 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +++  A   GC V++VG  G  +HL         Q +  S  GK +     L G FQ  N
Sbjct: 248 DMVAIARARGCEVITVGRDGGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AAGL IA G D A V + L  L  V GR +   T   GG ++VDYAHT +++   L+
Sbjct: 308 VLLAAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQ 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++ 
Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVME 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   I+ +   D L++AGKGHET   + + +     D +  
Sbjct: 428 GAPEATEVGDRAEAILRGIDAIGTGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481


>gi|126741290|ref|ZP_01756968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717608|gb|EBA14332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
          Length = 499

 Score =  365 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 185/482 (38%), Positives = 274/482 (56%), Gaps = 1/482 (0%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +D    +++L +      +  I+ +S DSR    G +F A+ G++  G  FIP A+ +G
Sbjct: 7   NQDLSRPLSELGLTARGGADPVIHSISVDSREALEGGLFAALPGSQVHGAKFIPAALERG 66

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A AI+  +  +         S+  +++V++ R+ L+  A+  +G  PE ++AVTGT+GK+
Sbjct: 67  ATAILTDAKGAEIAAQPLSESHAAVVIVEDPRQALAYAAALWFGAQPETMVAVTGTNGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SVASFV+QI    G  +  +G T    +++     TTP PI L +AL+  ++ GVTH ++
Sbjct: 127 SVASFVRQIWCELGHQAVNLGTTGVEGAWSYPLAHTTPEPITLHRALARAAAAGVTHAAM 186

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGLDQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +LP+E  A+I 
Sbjct: 187 EASSHGLDQGRLDGVQLAAAGFTNFTQDHLDYHKTFEAYFAAKAGLFRRVLPEEGVAVIN 246

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D    E+   A   G  VL+VG     + L  +      Q +  +   + F +   L 
Sbjct: 247 MNDPRGAEMRAIAAARGQEVLTVGRGLGDLSLSGLRYDGTGQDLRFAWHDRPFQYRLNLI 306

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G FQ  N L+A GL IA G D   V   L  L  V GR E   T   G  ++VDYAHT +
Sbjct: 307 GGFQAENVLLACGLAIASGEDPEAVFATLPHLTTVRGRMEHAATRENGASVFVDYAHTPD 366

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++   +K +R    GR++ + G GGDRD GKRP+MG+ A + AD+ IVTDDNPR+EDP  
Sbjct: 367 AVATAIKALRPHVLGRLLAIVGAGGDRDAGKRPLMGQAAAENADLVIVTDDNPRTEDPAA 426

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           IRA +  G P  +E G+R EAI   +++L   D L++ GKGHE+  IV + +     D +
Sbjct: 427 IRAAVKGGAPEALEVGDRAEAILRGVDLLGPGDSLLICGKGHESGQIVGS-DVLPFDDVE 485

Query: 488 II 489
             
Sbjct: 486 QA 487


>gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
 gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
          Length = 493

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 186/478 (38%), Positives = 270/478 (56%), Gaps = 2/478 (0%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +++L +     RE +I+ +S DSR +  G +F A+ G K  G  F+  A++QGA A++
Sbjct: 5   KTLSELGLTARGGREARISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAALSQGAAAVL 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +  +         S   +++  + R+ L+   +  +G  P  ++AVTGT+GK+SVA+F
Sbjct: 65  TDAEGAQIAAETLAGSEVALVIAADPRQALAFACALFFGAQPATMIAVTGTNGKTSVATF 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V+++ Q  G  +  +G T     +    R TTP PI L KAL+  +  GV H ++EASSH
Sbjct: 125 VRRLWQEMGFRAVNLGTTGIEGDWQAPLRHTTPDPITLHKALAEAALAGVEHAAMEASSH 184

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RLDG++L A  FTN  +DH+DYH   + YF AK  LF  +LP+E  A++  DDA 
Sbjct: 185 GLDQRRLDGVQLRAAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDAR 244

Query: 253 SKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +++  A   G   L+VG  QG  + L         Q++ +S  G        L G FQ
Sbjct: 245 GIDMLAIAKARGQETLTVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQ 304

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NAL+AAGL IA G ++  V   L KL  V GR +   T   G  +YVD+AHT +++  
Sbjct: 305 GQNALLAAGLVIACGAEAEDVFRALPKLDTVRGRMQLAATRDSGAAVYVDFAHTPDAVST 364

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +K +R    GR++ + G GGDRD GKRP+MG  A + AD+ IVTDDNPRSEDP  IR +
Sbjct: 365 AIKALRPHVMGRLVAIIGAGGDRDAGKRPLMGAAAAEHADVVIVTDDNPRSEDPAAIRLQ 424

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           ++ G P  IE G+R EAI   ++ML   D L+V GKGHET  IV +       D +  
Sbjct: 425 VLGGAPEAIEVGDRAEAILRGVDMLQPGDALLVCGKGHETGQIVGD-TVYPFDDVEQA 481


>gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 490

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 234/487 (48%), Positives = 313/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +          E +I  V+SDSR ++ G++F A+ G K DG  F+
Sbjct: 3   MKLKEI--ALFKELASG------DAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK P+ ++AV
Sbjct: 55  ADAVKRGASAIIAGKDTAIAD------AGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+ 
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAD 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL AG+FTNLGRDH+DYH T + Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII++DD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFSDDHFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGDEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+AIVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVAIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+   PG  E G+R EAI TA+ M+   D LVVAGKGHE   IV +  
Sbjct: 409 PRSEVPAQIRSEIMAAAPGATEIGDRREAIFTAVSMMQAGDTLVVAGKGHEEGQIVGS-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
 gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
          Length = 483

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 227/476 (47%), Positives = 296/476 (62%), Gaps = 8/476 (1%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +        +I  +S+DSR +  G++FVA+ G K DG  +I  AI +GA AIV      L
Sbjct: 11  LEDQNLSSMEITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIVTDCHAVL 70

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           +D         PIL V N R  L+L A+R YG  PE ++AVTGTSGK+SV SF++QI   
Sbjct: 71  EDLP------VPILRVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTH 124

Query: 140 SGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  IG    +S        LTTP P+ L + L  +S +GVTH ++EASSHGLDQ R
Sbjct: 125 VGFCAASIGTVGVVSPKQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGR 184

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LDG++L AG+FTNLGRDH+DYH   + Y  AKM+LF+ LLP  +PA+I+ADD YS++V+ 
Sbjct: 185 LDGVRLTAGAFTNLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVID 244

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A  RVL++G +G+FI + +V    +KQ +   VE   + F  PL G+FQV NAL+A
Sbjct: 245 VVTQARRRVLTIGRKGQFITINRVEHQRSKQCIECRVENNIYTFDLPLAGDFQVANALMA 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AGL IA G+    V   LE L   PGR EFVG       +Y+DYAH   +LE +L ++R 
Sbjct: 305 AGLAIATGVSPRKVFSALETLQGAPGRLEFVGKTENNAPVYIDYAHKPEALEQVLLSVRP 364

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            T GR+IVVFGCGGDRDQGKRP+MGKIA D ADI IVTDDNPR+E PEKIR +I+  +P 
Sbjct: 365 FTQGRLIVVFGCGGDRDQGKRPLMGKIAADKADIVIVTDDNPRTEMPEKIRKDILQAVPT 424

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            IE  +R EAI  A+E+L   D L++AGKGHE   I+         D     E L 
Sbjct: 425 AIEIADRGEAISYAVELLKAGDTLIIAGKGHEDGQIIG-QTTYPFSDRLKAIEALE 479


>gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 493

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 270/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +         I  ++ DSR ++ G +F A+ G++  G  FI  A+  GA A++  
Sbjct: 8   LSSLGLTARAGANPMITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A   SN  ++V D+ R+ L+  A+  +G  P  ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGAKIAAEALAGSNAALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GL +  +G T    ++A     TTP PI L + L+  +  G+TH ++EASSHGL
Sbjct: 128 QIWVEMGLPAVNLGTTGVEGAWAAPLAHTTPEPITLHRTLAEAARNGITHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP++  A++  DD    
Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVNIDDEKGI 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   GC V++VG  G  +HL+        Q +  +  GK +     L G FQ  N
Sbjct: 248 DIAAIARARGCEVITVGRDGGDLHLQGQRFDATGQDLRFTWRGKTYQKRLNLIGGFQGDN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AAGL IA G D+  V + L  L  V GR +   T   G  ++VDYAHT +++   L 
Sbjct: 308 VLLAAGLVIACGADAQEVFDTLPHLTTVRGRMQLAATRDNGAAVFVDYAHTPDAVATALS 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD+ KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA ++ 
Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRVKRPLMGQAAAENADMVIVTDDNPRSEDPASIRAAVLS 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   ++ L   D L++AGKGHET   V + +     D +  
Sbjct: 428 GAPDAWEVGDRAEAILRGVDALEPGDALLIAGKGHETGQTVGD-DVLPFDDVEQA 481


>gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
 gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
          Length = 496

 Score =  364 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 178/481 (37%), Positives = 272/481 (56%), Gaps = 1/481 (0%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
               + +  L +     R+ K+ +++ DSR ++ G++F A+ G +  G  FI  A+  GA
Sbjct: 5   GTVVKSLRDLGLTARGGRDVKVTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A++  +A +         ++  ++V ++ R+ L+  ++  +G  PE ++AVTGT+GK+S
Sbjct: 65  GAVLTDAAGAKIAADVLGGADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTS 124

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           VA+F +QI Q  GL +  +G T     +    + TTP PI L + L+  +  GVTH ++E
Sbjct: 125 VATFTRQIWQELGLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLAGAAESGVTHAAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGL Q RLDG++L+A  FTN  +DH+DYH + + YF AK  LF  +LP++  A+I  
Sbjct: 185 ASSHGLSQRRLDGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINI 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD    +++  A   G  VL+VG +   I L+        Q++ +S EG+       L G
Sbjct: 245 DDPRGVDMVAIARARGQEVLTVGREAADICLEAQRFDATGQEIRLSFEGEVRQERLGLIG 304

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N L+AAGL IA G D   V + L  L  V GR +       G  ++VDYAHT ++
Sbjct: 305 GFQADNVLLAAGLVIACGGDPDDVFDVLPMLGTVRGRMQLAAMRDNGAAVFVDYAHTPDA 364

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   +K +R    GR++ + G GGDRD+GKR +MG+ A + AD  IVTDDNPRSEDP  I
Sbjct: 365 VATAIKALRPHVMGRLVAIVGAGGDRDKGKRLLMGQAAAEFADSVIVTDDNPRSEDPASI 424

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           RA ++ G P  +E G+R EAI   ++ L   D L++ GKGHE+  IV +       D + 
Sbjct: 425 RAMVMEGAPEALEVGDRAEAILRGVDALGPGDALLICGKGHESGQIVGD-TVFPFDDAEQ 483

Query: 489 I 489
            
Sbjct: 484 A 484


>gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 492

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 173/503 (34%), Positives = 260/503 (51%), Gaps = 24/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK+ +L      E++  +     + W E ++  +  DSR ++ G IFVAI G   DGH F
Sbjct: 1   MKIAEL-----VEILKTIITKNGINWAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I + I +    IV                    L+V ++R+ L+L A   YG   E I  
Sbjct: 56  IEKVIEKKPALIVAEEERPGIF-------GVNHLLVKDSRQALALLARTFYGNPTEKISV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V   V  + +  G  +  IG   + I         TTP  + L +  + 
Sbjct: 109 IGVTGTNGKTTVTHLVTSLLESFGYKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAE 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +    V+HV++E SSH L Q R+ GI    G FTNL +DH+D+H++ + YFNAK  LF+ 
Sbjct: 169 MVKSEVSHVAMEVSSHALVQKRVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFKI 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L  +++   +   D +  + + +          +  Q      K V   ++    T+  +
Sbjct: 229 LAEQKALPGVINKDDFYGQRILKEVAHPFVTYGIKEQADIT-AKNVELTNSGTAFTLCYQ 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +++     L G F VYN L A G  + +G     ++++L  L+ VPGRFE +    +  
Sbjct: 288 EEEYPVKVKLLGLFNVYNILAAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELI-DEGQDF 346

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE ILK+ R IT GR+I VFGCGGDRD+ KRP MGKI+  LADI I+T
Sbjct: 347 AVIVDYAHTPDGLENILKSARAITPGRVIAVFGCGGDRDKTKRPKMGKISATLADITIIT 406

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR+EDPE I  EI  G        ++++ +R +AI+TA+ +    D +V+AGKGHE 
Sbjct: 407 SDNPRTEDPEAIINEIEKGFFDALPGKYLKEVDRKKAIKTALLLAKPGDTVVIAGKGHED 466

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+    K    D  + REIL 
Sbjct: 467 YQIIGT-TKYPFDDRVVAREILR 488


>gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 5 str. 513]
          Length = 488

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNEL------PPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis B2/94]
 gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
          Length = 488

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 237/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 493

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 185/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L++         I  ++ DSR ++ G++F A+ G +  G  FI  A+  GA AI+  
Sbjct: 8   LSELALTARGGANPDITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAAAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++V ++ R+ L+  A+  +G  P+ I+AVTGT+GK+SVASFV+
Sbjct: 68  ARGAEIAADELAASDAALIVTEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSVASFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI     L++  +G T    ++      TTP PI L + L+  +  GVTH ++EASSHGL
Sbjct: 128 QIWTELDLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  F+N  +DH+DYH T +AYF AK  LF+ +LP++  A+I   D    
Sbjct: 188 EQRRLDGVHLTAAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLGDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+ + A   G  +L+VG +G  + L         Q +  S  GK       L G FQ  N
Sbjct: 248 EMRRIAEARGQNILTVGPEGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V + L  L  V GR +   T S G  ++VDYAHT +++   LK
Sbjct: 308 VLLACGLVIAAGEDPDRVFDTLPHLTTVRGRMQLAATRSNGAAVFVDYAHTPDAVATALK 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I + G GGDRD  KRP+MGK A D AD+  VTDDNPRSEDP  IR  ++ 
Sbjct: 368 AMRPHVMGRLIAIVGAGGDRDATKRPLMGKAAADNADLVFVTDDNPRSEDPASIRTAVML 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   I+ L   D L++AGKGHET  IV + +     D +  
Sbjct: 428 GAPDATEVGDRAEAILRGIDALQPGDALLIAGKGHETGQIVGD-QVLPFDDVEQA 481


>gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
 gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
          Length = 490

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 237/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
 gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
          Length = 490

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNEL------PPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis ATCC 23445]
 gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
 gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC
           23445]
 gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
          Length = 488

 Score =  363 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
 gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
          Length = 490

 Score =  363 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M644/93/1]
 gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M13/05/1]
          Length = 488

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  A C V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelagibaca bermudensis HTCC2601]
 gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. HTCC2601]
          Length = 494

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 190/476 (39%), Positives = 272/476 (57%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +     R+ ++  +S DSR +  G +F A+ G K  G  FI  A+AQGA A++  
Sbjct: 8   LSDLGLTARGGRDARVTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGAVAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +    +A   S+  +++    R  L+   +  +G  P  ++AVTGT+GK+SVASFV+
Sbjct: 68  AEGARLAEAALAESDVALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTSVASFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           ++ Q  G  +  +G T     +    R TTP PI L KAL+  +S GV H ++EASSHGL
Sbjct: 128 RLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L+A  FTN  +DH+DYH   + YF AK  LF  +LP+E  A++  DDA   
Sbjct: 188 DQRRLDGVQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNIDDARGI 247

Query: 255 EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++  A   G  VL+VG  +G  + L         Q++ +S  G        L G FQ  
Sbjct: 248 DMLAIARARGQEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLIGGFQGQ 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NALVAAGL IA G ++  V   L +L  V GR +   T   G  +YVDYAHT +++   +
Sbjct: 308 NALVAAGLVIACGAEAEDVFRALPRLETVHGRMQLAATRDSGAAVYVDYAHTPDAVATAI 367

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR+I + G GGDRD GKRP+MG+ A + AD+ IVTDDNPRSEDP  IRA+++
Sbjct: 368 KALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAAENADLVIVTDDNPRSEDPAAIRAQVL 427

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P   E G+R EAI   +++L   D L+V GKGHET  IV +       D +  
Sbjct: 428 EGAPEATEVGDRAEAILRGVDLLQPGDALLVCGKGHETGQIVGD-TVYPFDDVEQA 482


>gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. 83/13]
 gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
 gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
          Length = 488

 Score =  363 bits (930), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
 gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
          Length = 490

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  A C V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLARCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRMIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
 gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
          Length = 499

 Score =  362 bits (929), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476

Query: 480 KKMSVDC 486
                D 
Sbjct: 477 TLPFSDH 483


>gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
 gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
          Length = 490

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
          Length = 490

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
 gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
          Length = 497

 Score =  362 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 174/478 (36%), Positives = 261/478 (54%), Gaps = 2/478 (0%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  L +     R+  I  ++ DSR ++ G++F A+ G +  G  FI  A+ QGA A++
Sbjct: 9   QTLGGLGLTAHGGRDVVITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVL 68

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +  +         S+  +++ ++ R+ L+  A+  + K P  + AVTGT+GK+SVASF
Sbjct: 69  TDAEGARIAERDLAESDAALVIAEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASF 128

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++QI    G  +  +G T    S++     TTP PI L + ++ L+  G+TH ++EASSH
Sbjct: 129 LRQIWMLVGREAVNLGTTGVEGSYSAPLMHTTPEPITLHRMMAELAEAGITHAAMEASSH 188

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q RLDG+ L  G+FTNL +DH+DYH   + YF+AK  LF  +L  ++ A+I  D   
Sbjct: 189 GLAQRRLDGVMLRVGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLR 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ + A + G  VL+VG        +       + Q +  S +G+       L G FQ
Sbjct: 249 GVDMAEVAADRGLDVLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQ 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N LVAAG+ I  G D   V   L  L  V GR E     + G  ++VDYAHT +++  
Sbjct: 309 AENVLVAAGMAILSGEDPDQVFTVLPALSTVHGRMELAARRTNGAAVFVDYAHTPDAVAT 368

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GR++ V G GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IR  
Sbjct: 369 ALKALRPHVLGRLVAVIGAGGDRDRTKRPLMGEAAAAHADLVFVTDDNPRSEDPAAIRQA 428

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           ++ G P   E  +R EAI  A++ L   D L++AGKGHET  I+ +       D +  
Sbjct: 429 VLLGCPDATEVADRAEAILRAVDALAPGDALLIAGKGHETGQIIGD-TVFPFDDTEQA 485


>gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
 gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
          Length = 488

 Score =  362 bits (928), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 235/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +       +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEIT--LFNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 505

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 233/495 (47%), Positives = 315/495 (63%), Gaps = 15/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPE+  QL   P    +  I+ +SSDSRH+  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPEIEAQLEG-PAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S A           ++ P+L V   R+FLS+ ASR +G+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIASQAVE---------TSIPVLAVKEPRRFLSIAASRFFGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAG 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  A      +LLP
Sbjct: 189 EGVTHAAMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAY-MAAKMRLFQLLP 247

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +K A +AG  V +VG +G ++ LK+V    +KQ   I ++G+ 
Sbjct: 248 KGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIDGEI 307

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G++  + +  LEKL    GR E VG    G   Y
Sbjct: 308 FEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMAALEKLVGASGRLELVGHTKDGALAY 367

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 368 VDYAHKPDALENVLGSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 427

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+    G  E  +R +AIR A+ ML   D L+VAGKGHE    + +  
Sbjct: 428 PRSEEPAAIRAEIMAAASGASEIADRAKAIREAVGMLRSGDTLIVAGKGHEEGQTIGS-V 486

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ L 
Sbjct: 487 TLPFSDHAEVRKALE 501


>gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 488

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramyl-tripe [Brucella
           melitensis biovar Abortus 2308]
 gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
          Length = 488

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella canis ATCC 23365]
 gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 3 str. 686]
 gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC
           23365]
          Length = 488

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 235/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +       +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 490

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           [Rhizobium etli CIAT 652]
 gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CIAT 652]
          Length = 506

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 237/495 (47%), Positives = 315/495 (63%), Gaps = 14/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR++  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDLFPELEAQLEG-PAGLLD--ISGLSSDSRNVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S              + P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  ADAAGRGAAVAIASQPVDA---------SIPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 248

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S++ +K A +AG  V +VG +G ++ LK+V    +KQ   I +  + 
Sbjct: 249 KGAPAVIFADDPWSRQAVKAAVDAGLDVRTVGRKGDYLTLKRVEHFRHKQMAEIHIGDEI 308

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+   + +  LEKL    GR E VG    G   Y
Sbjct: 309 FEVDIPLAGDFQVANALVAAGLAMSTGVVPKVAMAALEKLVGASGRLELVGHTKDGALAY 368

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 369 VDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 428

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E G+R  AIR A+ ML   D L+VAGKGHE    + +  
Sbjct: 429 PRSEEPAAIRAEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKGHEEGQTIGS-V 487

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ L 
Sbjct: 488 TLPFSDHAEVRKALE 502


>gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
 gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
          Length = 490

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 235/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL +       +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELASG------EAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis ATCC 23457]
 gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC
           23457]
          Length = 488

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 235/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476

Query: 480 KKMSVDC 486
                D 
Sbjct: 477 TLPFSDH 483


>gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
 gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
          Length = 490

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis
           M5-90]
          Length = 490

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 235/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 482

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 151/500 (30%), Positives = 248/500 (49%), Gaps = 30/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+     E+               I+ V  DSR  +  ++F+AI G K DG L++
Sbjct: 1   MRLVDLLKGVKHEIKGN--------PNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V     S             +++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVTDRDISE-------YPGVTVVLVEDARAAMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+SV   ++ I ++       +G   + I         TTP  + L +  S +
Sbjct: 106 GITGTNGKTSVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  HR+D        FTNL +DH+D+H++ +       +   +L
Sbjct: 166 VNEGVKYVVMEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESME----EYAKTKSKL 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     +M  +         +      +  K++    +  +  + ++ 
Sbjct: 222 FKMAKKASVINIDDKYSSMMIESSKGKVLTYGIKDFAYVM-AKEIKNSLSGVKFKVQIQD 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F VYNAL A  +   +GI    V E L  + V  GRFE V T      
Sbjct: 281 KKEEISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVTV-KGRFEPVETGR-DFY 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +++DYAHT + +  I++ ++   +GR I+VFG GGDRD+ KRP+MG++A   AD  I+T 
Sbjct: 339 VFIDYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTS 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSE+P++I A+I  GI      ++   +R EAIR A+    K DV+++AGKGHET  
Sbjct: 399 DNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQ 458

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ + +     + +I++EIL
Sbjct: 459 IIGD-KVIPFDEREIVKEIL 477


>gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
          Length = 499

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 235/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 IDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476

Query: 480 KKMSVDC 486
                D 
Sbjct: 477 TLPFSDH 483


>gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
 gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
          Length = 499

 Score =  361 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476

Query: 480 KKMSVDC 486
                D 
Sbjct: 477 TLPFSDH 483


>gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAAKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 476

Query: 480 KKMSVDC 486
                D 
Sbjct: 477 TLPFSDH 483


>gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 492

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 151/500 (30%), Positives = 248/500 (49%), Gaps = 30/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+     E+               I+ V  DSR  +  ++F+AI G K DG L++
Sbjct: 11  MRLVDLLKGVKHEIKGN--------PNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V     S             +++V++ R  ++  AS  Y      +  +
Sbjct: 63  EEAIKNGAVAVVTDRDISE-------YPGVTVVLVEDARAAMAKIASNFYNNPTSKLTLI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+SV   ++ I ++       +G   + I         TTP  + L +  S +
Sbjct: 116 GITGTNGKTSVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLM 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  HR+D        FTNL +DH+D+H++ +       +   +L
Sbjct: 176 VNEGVKYVVMEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESME----EYAKTKSKL 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     +M  +         +      +  K++    +  +  + ++ 
Sbjct: 232 FKMAKKASVINIDDKYSSMMIESSKGKVLTYGIKDFAYVM-AKEIKNSLSGVKFKVQIQD 290

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F VYNAL A  +   +GI    V E L  + V  GRFE V T      
Sbjct: 291 KKEEISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVTV-KGRFEPVETGR-DFY 348

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +++DYAHT + +  I++ ++   +GR I+VFG GGDRD+ KRP+MG++A   AD  I+T 
Sbjct: 349 VFIDYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTS 408

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSE+P++I A+I  GI      ++   +R EAIR A+    K DV+++AGKGHET  
Sbjct: 409 DNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQ 468

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ + +     + +I++EIL
Sbjct: 469 IIGD-KVIPFDEREIVKEIL 487


>gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
 gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
          Length = 493

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 263/475 (55%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +         I  ++ DSR ++ G++F A+ G+   G  FI  A+  GA A++  
Sbjct: 8   LSSLGLTAKGEANPLITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         +   ++V D  R+ L+  A+  +G  P  ++AVTGT+GK+SV++FV+
Sbjct: 68  ATGAAMAADLMASAGVAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GLS+  +G T    ++      TTP PI L +AL+  ++ G+TH ++EASSHGL
Sbjct: 128 QIWIEMGLSAVNLGTTGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH T  AYF+AK  LF  +LP++  A+I  DD    
Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGI 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   GC VLSVG  G  +HL         Q +     GK +     L G FQ  N
Sbjct: 248 DMAAIARARGCEVLSVGRDGGDLHLTGQRFDATGQDLRFDWRGKTYQKRLNLIGGFQADN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G   A V + +  L  V GR +   T   GG ++VDYAHT +++   LK
Sbjct: 308 VLLACGLVIACGAKPADVFDTIPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAISTALK 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A   AD+  VTDDNPRSEDP  IRA +I 
Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDTTKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVIA 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   I+ +   D L++AGKGHET   + + +     D +  
Sbjct: 428 GAPDATEVGDRAEAILRGIDAIGPGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481


>gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 488

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 237/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 493

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 270/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL++     R+  I+ ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI+  
Sbjct: 8   LSQLALTARGGRDPDISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGASAILTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +    +    S   ++VV++ R+ L+L A+  +G  P  ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGARIAAAELAASQAALVVVEDPRQTLALTAALWFGAQPATMVAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    ++      TTP PI L + L+   + GVTH ++EASSHGL
Sbjct: 128 QIWTELGHDAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD    
Sbjct: 188 EQRRLDGVVLKAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMDDPKGA 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  VL+VG     + L         Q +  S  GK +     L G FQ  N
Sbjct: 248 EMRAIAAARGQNVLTVGRGPCDLSLTNQRFDATGQDLLFSWRGKAYQARLDLIGGFQAEN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G     V E L  L  V GR +   T + G  ++VDY+HT +++   L+
Sbjct: 308 ILLACGLVIASGGAPERVFETLPHLGTVRGRMQLAATRANGAAVFVDYSHTPDAVATALR 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MGK A++ ADI I+TDDNPRSEDP  IRA ++ 
Sbjct: 368 ALRPHVMGRLVAIVGAGGDRDPYKRPLMGKAAVENADIVIITDDNPRSEDPALIRAAVMQ 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G PG  E G+R EAI   ++ L   D L++ GKGHET  +V + +     D +  
Sbjct: 428 GAPGATEVGDRAEAILRGVDTLEPGDALLICGKGHETGQVVGD-QVLPFDDVEQA 481


>gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
 gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
          Length = 483

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 230/473 (48%), Positives = 301/473 (63%), Gaps = 8/473 (1%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +    +I  +S+DSR +  G++FVA+ G K DG  +I  AI +GA AIV      L+D 
Sbjct: 14  KKLSSIEITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIVTDCQAVLEDL 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           S       P+L V N R  L+L A+R YG  PE ++AVTGTSGK+SV SF++QI    GL
Sbjct: 74  S------VPVLRVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGL 127

Query: 143 SSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  IG    +S    D   LTTP P+ L + L  +S +GVTH ++EASSHGLDQ RLDG
Sbjct: 128 CAASIGTVGVVSPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRLDG 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++L AG+FTNLGRDH+DYH+  + Y  AKMRLF+ LLP  +PA+I+ADD YSK+V+    
Sbjct: 188 VRLTAGAFTNLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVT 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A  RVL++G +G FI + +V    +KQ +   VE K + F  PL G+FQV NALVAAGL
Sbjct: 248 QARRRVLTIGRKGHFITINRVEHQRSKQCIECRVENKIYTFDLPLAGDFQVANALVAAGL 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            IA G+    V   LE L   PGR EFVG   +   +Y+DYAH   +LE +L ++R  T 
Sbjct: 308 AIATGLSPDKVFSALETLQGAPGRLEFVGKTEKNAPVYIDYAHKPEALEQVLLSVRPFTQ 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           GR+IVVFGCGGDRDQGKR +MGKIA D ADI IVTDDNPR+E+PEKIR +I+  +P  IE
Sbjct: 368 GRLIVVFGCGGDRDQGKRALMGKIAADKADIVIVTDDNPRTENPEKIRKDILQAVPTAIE 427

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +R EAI  ++ +L   D L++AGKGHE   I+   +     D     E L 
Sbjct: 428 IADRGEAISYSVGLLKAGDTLIIAGKGHEDGQIIG-QKTYPFSDRLKAIEALE 479


>gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 499

 Score =  359 bits (922), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 237/487 (48%), Positives = 312/487 (64%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG +F 
Sbjct: 12  MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFA 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AIV     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 64  ADAVKRGAVAIVAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 118 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 178 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 238 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 298 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 357

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 358 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKGHEEGQIVGN-I 476

Query: 480 KKMSVDC 486
                D 
Sbjct: 477 TLPFSDH 483


>gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 485

 Score =  359 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 171/500 (34%), Positives = 267/500 (53%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+  L+ K+  E+++          E +I+ ++ DSR ++ G +FVAI G K DGH FI
Sbjct: 1   MKVDQLL-KNLSEIVD-----VKGSTEVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAI  GA  ++     +       +  +   + V N+RK LS  +S  +GK  E  N++
Sbjct: 55  GQAINNGAVVVIGEKEIN-------LPEDVLYIKVKNSRKALSEASSLFFGKPAERLNVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I   +G S+  +G     I         TTP  + L +  S +
Sbjct: 108 GVTGTNGKTTTTYLIKAILDEAGYSTGVVGTIGIRIKERLLPAERTTPESLELNEIFSEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +V++E SSH L  HR+D +K   G FTNL +DH+D+H + + Y+ +K +LF+  
Sbjct: 168 VKEGVEYVTMEVSSHSLKLHRVDHVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKLFDL- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+I  DD   + +    +           +   +  + V    +     +   G
Sbjct: 227 ---SRKAVINVDDESGERLCSELNIPVITYAI--EKNADVRAENVVIGSDGVSYEVCAGG 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +     + +PG F VYN+L A   C+++GID   + + LEK+  VPGRFE V    +   
Sbjct: 282 ERRKITYKVPGRFSVYNSLAAISACLSLGIDLETMAKALEKVRGVPGRFEPV-DEGQDFT 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE +L  ++T   GRII VFG GGDRD+GKRP+MGK+  + +D  I+T 
Sbjct: 341 VIVDYAHTPDGLENVLNTVKTFARGRIITVFGAGGDRDRGKRPLMGKVVSERSDYFIITS 400

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP+ I  +I  G+     + +  +R EAIR AIEM    DV+++AGKGHE   I
Sbjct: 401 DNPRTEDPQAIIDDIEKGVTERSNYEKIIDRREAIRRAIEMALPGDVVLIAGKGHEDYQI 460

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + + +     D ++ RE L 
Sbjct: 461 IGD-KVLHFDDREVAREFLR 479


>gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
 gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
          Length = 493

 Score =  359 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 188/475 (39%), Positives = 272/475 (57%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +         I  +S DSR +Q G +F A+ G+K  G  FI  A+  GA A++  
Sbjct: 8   LSSLGLTAKGGGNPPIAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVAVLTD 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A  +++  ++V D  R+ LS  A+  YG  P+ ++AVTGT+GK+SV++FV+
Sbjct: 68  AEGAKLAADALAQADVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GL++  +G T    ++      TTP PI L + L+  S+ G+TH ++EASSHGL
Sbjct: 128 QIWIEMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEASSHGL 187

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T  AYF+AK  LF  +LP++  A+I  DD    
Sbjct: 188 DQRRLDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGV 247

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           +++  A   GC V++VG  G  +HL         Q +  S  GK +     L G FQ  N
Sbjct: 248 DMVAIARARGCEVITVGRDGGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AAGL IA G D A V + L  L  V GR +   T   GG ++VDYAHT +++   L+
Sbjct: 308 VLLAAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDNGGAVFVDYAHTPDAIATALQ 367

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++ 
Sbjct: 368 AMRPHVMGRLVAIVGAGGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPATIRAAVME 427

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P   E G+R EAI   I+ +   D L++AGKGHET   + + +     D +  
Sbjct: 428 GAPEATEVGDRAEAILRGIDAIGTGDALLIAGKGHETGQTIGD-DVLPFDDVEQA 481


>gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
 gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
          Length = 483

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 213/485 (43%), Positives = 296/485 (61%), Gaps = 9/485 (1%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   L N ++  P    + +I+ ++ DSR +  G++FVA+ G+K DG  FI  A A+GA 
Sbjct: 2   NLARLANGIAHAPDNLDKTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKGAV 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++ SS   ++       ++ P++  DN R   +  A+R Y K PE ++AVTGT+GK+S+
Sbjct: 62  AVLTSSDAVVE-------TDLPVIRADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSI 114

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVE 188
           ASF++QI   +GL +  IG T  +S    D   LTTP P+ LA+ L+ L  +GVTH S+E
Sbjct: 115 ASFLRQIWTATGLKAASIGTTGVVSPSRNDYGTLTTPDPVALAELLASLEGEGVTHASME 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHG+DQ RLDG++L AG FTNLG DH+DYH   ++YF AKM LF  LLPK +PA+I  
Sbjct: 175 ASSHGIDQFRLDGVRLAAGGFTNLGHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINT 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD +S   ++ A   GC V +VG  G  + LK++     +Q   +         + PL G
Sbjct: 235 DDQWSGRAIEVATGVGCDVRTVGRNGSLLALKRLEHERERQVAEVKTPDGIQRVVLPLAG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           EFQ+ NALVAAGL I  G      LE LE L    GR E  G  + G  ++VDYAH   +
Sbjct: 295 EFQMSNALVAAGLAIVTGTPVKAALETLENLKGASGRLEKAGMTAGGVPVFVDYAHKPEA 354

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE +L+ +R  T+GR+I+V GCGGDRD+ KRP+MG+IA  LAD+ IVTDDNPRSEDP  I
Sbjct: 355 LEHVLRAVRPFTTGRVILVMGCGGDRDKTKRPMMGEIANRLADVVIVTDDNPRSEDPAVI 414

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           R+EI+       E G+R EAIR A+      D ++VAGKGHET  +V +       D + 
Sbjct: 415 RSEIMAAAGEAREIGDRREAIRAAVGEARTGDTVIVAGKGHETGQMVGS-INHPFSDHEE 473

Query: 489 IREIL 493
           +R  +
Sbjct: 474 VRRAI 478


>gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
 gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
          Length = 494

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S   ++VV++ R+ L+  A+  +G  PE ++AVTGT+GK+SVASFV+
Sbjct: 69  AAGAQIVAQLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    S++     TTP P+ L  AL+  ++ GVTH ++EASSHGL
Sbjct: 129 QIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD   +
Sbjct: 189 EQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGE 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  N
Sbjct: 249 QMRAVAAARGHEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 ILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVKG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +E G+R EAI   ++ L   D L++ GKGHET  IV + +     D +  
Sbjct: 429 GAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGS-DVLPFDDVEQA 482


>gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 494

 Score =  358 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S   ++VV++ R+ L+  A+  +G  PE ++AVTGT+GK+SVASFV+
Sbjct: 69  AAGAQIVAELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    S++     TTP P+ L  AL+  ++ GVTH ++EASSHGL
Sbjct: 129 QIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP +  A+I  DD   +
Sbjct: 189 EQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGE 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  N
Sbjct: 249 QMRAVAAARGQEVISVGRGLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 ILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAVIRAAVKG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +E G+R EAI   ++ L   D L++ GKGHET  IV + +     D +  
Sbjct: 429 GAPDAMEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGS-DVLPFDDVEQA 482


>gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
 gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
          Length = 494

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 185/475 (38%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      +  I  ++ DSR +  G +F A+ G++  G  F P A+  GA AI+  
Sbjct: 9   LSQLGLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S   ++VV++ R+ L+  ++  +G  PE ++AVTGT+GK+SVASFV+
Sbjct: 69  AAGAQIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFVR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP P+ L  AL+  ++ GVTH ++EASSHGL
Sbjct: 129 QIWIELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP++  A+I  DD    
Sbjct: 189 DQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRGP 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  V+SVG     + L       + Q +  +   K +     L G FQ  N
Sbjct: 249 EMRAIAAARGQEVISVGRGAGDLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D   V E L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 ILLACGLVIASGEDPQAVFETLPHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAAQENADLVIVTDDNPRSEDPAVIRAAVKG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G PG +E G+R EAI   ++ L   D L++ GKGHET  IV   +     D +  
Sbjct: 429 GAPGALEVGDRAEAILRGVDALGAGDALLICGKGHETGQIVGT-DVLPFDDVEQA 482


>gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
 gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
          Length = 499

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 182/475 (38%), Positives = 274/475 (57%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L +      +  I+ ++ DSR    G +F A+ G++  G  FIP A+ QGA AI+  
Sbjct: 14  LSELGLTARGGADPLISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGAVAILTD 73

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S+  +++V++ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+FV+
Sbjct: 74  AAGAKIAAQPLEESHAALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSVATFVR 133

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 134 QIWCALGHEAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEASSHGL 193

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +LP++  A+I  +D+   
Sbjct: 194 DQCRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMNDSRGA 253

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  V+S+G     I L  +      Q +  +   + +     L G FQ  N
Sbjct: 254 EMRAVAAARGQEVISIGRGLGDISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIGGFQAEN 313

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+A GL IA G D A V + L +L  V GR E   T   G  ++VDYAHT +++   +K
Sbjct: 314 VLLACGLVIAGGEDPAAVFDTLPQLTTVRGRMEHAATRDNGASVFVDYAHTPDAVATAIK 373

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD+ IVTDDNPRSEDP  IRA +  
Sbjct: 374 ALRPHVLGRLVAIVGAGGDRDATKRPLMGRAAQENADVVIVTDDNPRSEDPAVIRAAVRG 433

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +E G+R EAI   ++ML+  D L++ GKGHE+  +V   +     D +  
Sbjct: 434 GAPDALEVGDRAEAILRGVDMLSTGDALLICGKGHESGQVVGT-DVLPFDDVEQA 487


>gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
 gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
          Length = 483

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 219/494 (44%), Positives = 301/494 (60%), Gaps = 17/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L  +   +           +    I  +S+DSR I  G++FVA+ GN+ DG  ++
Sbjct: 1   MLLGELFIECIKD---------DYFASIDITGISADSRQILPGYVFVALKGNQRDGREYV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA  IV    +  ++         P++ V N R  L++ A+R Y   PE ++AV
Sbjct: 52  NDAIKRGARVIVTDHNFVFENSL------VPVVRVLNVRHSLAIAAARFYNSQPEIMVAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SV SF++QI +  G  +  IG    +S    D   LTTP P+ L + L  +++
Sbjct: 106 TGTSGKTSVVSFIRQIWKYVGCCAASIGTVGVVSPKRHDLGSLTTPDPVMLQRLLCEIAN 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ R+DG++L A +FTNLGRDH+DYH+  + YF+AKMRLF  LLP
Sbjct: 166 EGVTHAALEASSHGLDQCRIDGVRLAAAAFTNLGRDHMDYHKCIEDYFHAKMRLFNTLLP 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +++PA+I+ADD YS++V+     A  +VL++G  GKFI L +V     KQ V   +    
Sbjct: 226 QDAPALIFADDIYSQKVIDIVRRAHRQVLTIGRTGKFITLNRVEHQRLKQCVECRMGNNI 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + F  PL G+FQV NAL+AAGL IA      +V   LEKL   PGR E VG    G  +Y
Sbjct: 286 YTFDLPLVGDFQVANALMAAGLAIATRASPDMVFRSLEKLQGAPGRLELVGKTEDGAPVY 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T GR+I+VFGCGGDRDQGKR +MG IA + ADI IVTDDN
Sbjct: 346 VDYAHKPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRALMGTIAGNKADIVIVTDDN 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR+E PEKIR +I+  +P  IE  +R EAI  A+ +L   D L+VAGKGHE   I+   +
Sbjct: 406 PRTEAPEKIRKDILQAVPEAIEIADRAEAIYYAVRLLKTGDTLIVAGKGHENGQIIG-QK 464

Query: 480 KKMSVDCDIIREIL 493
                D   +   L
Sbjct: 465 TYPFSDRLQVIAAL 478


>gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
 gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
          Length = 494

 Score =  357 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 180/482 (37%), Positives = 267/482 (55%), Gaps = 2/482 (0%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            D  + ++ L +     R+  +  ++ DSR ++ G++F A+ G+   G  FI  AI +GA
Sbjct: 2   ADHRKTLSDLGLTASGGRKADVTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            AI+   A +         S+  +++ D+ R+ L+  A+   G  P  ++AVTGT+GK+S
Sbjct: 62  TAILTDPAGARLAADVPSASDVAVVLADDPRQTLAFAAALWSGGQPNTMIAVTGTNGKTS 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V++F +QI    G ++  +G T    ++      TTP PI L + L+  +S GVTH ++E
Sbjct: 122 VSTFCRQIWVEMGYAAANLGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAME 181

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGLDQ RLDG++++A  FTN  +DH+D+H+T +AYF AKM LF  +L  +S A++  
Sbjct: 182 ASSHGLDQRRLDGVRIMAAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVNL 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD    EV + A++ G  V+ VG        L         Q +    EGK +     L 
Sbjct: 242 DDPKGPEVAEIAYDLGIDVIGVGRSEHADLQLLAQWFDATGQDLRFDFEGKTYVKRLNLI 301

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G FQ  N L+AA L IA G D+  V + L  L  V GR E   T   G  ++VDYAHT +
Sbjct: 302 GGFQADNVLLAAALVIACGADADEVFDTLPHLTTVRGRMELAATRDNGAAVFVDYAHTPD 361

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++   L  +R    GR+I + G GGDRD  KRP+MG+ A+  AD+  VTDDNPRSEDP  
Sbjct: 362 AVATALSAMRPHVMGRLIAIIGAGGDRDATKRPLMGEAAMREADLVFVTDDNPRSEDPAV 421

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           IR  ++ G P   E G+R EAI   ++ L   D L++AGKGHET   + + +     D +
Sbjct: 422 IRTAVMLGAPEATEVGDRAEAILRGVDALRPGDALLIAGKGHETGQTIGD-DVFPFNDVE 480

Query: 488 II 489
             
Sbjct: 481 QA 482


>gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
 gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
          Length = 494

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 178/475 (37%), Positives = 266/475 (56%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR +Q G++F A+ G++  G  F+ Q + QGA AI+  
Sbjct: 9   LSQLGLTARAGMDPQITGLAVDSREVQQGFVFAALPGSRVHGAKFVDQVLDQGAVAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +     A  R+   ++V ++ R+ LS  A+  +G  P  + AVTGT+GK+SV++F++
Sbjct: 69  TAGAEIAGEAIARAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVTGTNGKTSVSTFLR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 129 MIWTELGHQAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +L ++  A+I   D    
Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++   A   G  +++VG     I L  +      Q +  +   + F     L G FQ  N
Sbjct: 249 KMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVAAGL IA G D   V + L  L  V GR E   T   G  ++VDYAHT +++   +K
Sbjct: 309 VLVAAGLAIASGEDPVQVFDTLPHLSTVRGRMELAATRENGATVFVDYAHTPDAIATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG+ A + AD  IVTDDNPRSEDP  IRA ++ 
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGQAAHENADTVIVTDDNPRSEDPAAIRAAVMG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +  G+R EAI   ++ML   D L++ GKGHE+   +   +     D +  
Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEPGDALLICGKGHESGQTIGT-DVLPFDDVEQA 482


>gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
 gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
          Length = 492

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 185/479 (38%), Positives = 262/479 (54%), Gaps = 5/479 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +   Q R+  I  ++ DSR +  G +F A+ G K  G  FI  A+  GA A++  
Sbjct: 4   LTALGLTAAQGRDATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALRMGAAAVLTD 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +A +         S+  ++V ++ R+ L+  AS  +G HP  ++AVTGT+GK+SV+SF +
Sbjct: 64  AAGARIAADVLAASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNGKTSVSSFCR 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +  GL+   +G T    ++A   + TTP PI L + L+  +  G+THV++EASSHGL
Sbjct: 124 QIWEEMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEAAGHGITHVAMEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH T ++YF AKM LF  +L ++  A++  DD    
Sbjct: 184 DQRRLDGVVLAAAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAVVNLDDPKGP 243

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V       G  V+ VG        L         Q +  + +G+       L G FQ  
Sbjct: 244 VVAAICTQRGQEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHARLALIGGFQAE 303

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL IA G D   V   L +L  V GR E   T + G  ++VDYAHT +++E  L
Sbjct: 304 NVLLAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRANGAAVFVDYAHTPDAVETAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GRI+ + G GGDRD  KRP+MG  A + AD  IVTDDNPRSEDP  IRA ++
Sbjct: 364 KALRPHVMGRIVAIIGAGGDRDSTKRPLMGAAAAEFADSVIVTDDNPRSEDPASIRAAVL 423

Query: 434 H---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
               G     E  +R EAI   I+ML   D L++AGKGHE+  I+ +       D +  
Sbjct: 424 AGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKGHESGQIIGD-TIMPFDDVEQA 481


>gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
 gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
          Length = 495

 Score =  356 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 186/482 (38%), Positives = 268/482 (55%), Gaps = 8/482 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L +     RE +I  ++ DSR ++ G++F A+ G +  G  FI  A+   A AI+  
Sbjct: 4   LAELGLTARGGREAQITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRMKAGAILTD 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  ++V  + R+ L+  AS  +G HP+ ++AVTGT+GK+SV++F +
Sbjct: 64  AKGAEIAADELAASDAAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGKTSVSTFCR 123

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +   L    +G T    ++    + TTP PI L + ++  +  G+THV++EASSHGL
Sbjct: 124 QIWEELDLPGVNLGTTGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVAMEASSHGL 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  F+N  +DH+DYH+T +AYF+AKM LF+ +L ++  A+I  DD   K
Sbjct: 184 DQRRLDGVILAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVINLDDPKGK 243

Query: 255 EVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV       G  V+ VG      + L         Q +    +G+       L G FQ  
Sbjct: 244 EVAAICTARGQEVIGVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLELIGGFQAE 303

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A+GL IA G D   V + L+ L  V GR E   T   G  ++VDYAHT +++E  L
Sbjct: 304 NVLLASGLVIAAGADPDEVFDTLQYLTTVRGRMELAATRQSGAAVFVDYAHTPDAVETAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GRIIV+ G GGDRD GKRP+MG  A   ADI IVTDDNPRSEDP  IRA ++
Sbjct: 364 RAMRPHVMGRIIVIVGAGGDRDAGKRPLMGAAAAQHADIVIVTDDNPRSEDPAAIRAAVM 423

Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G           E G+R EAI   I+ML   D L++AGKGHET  +V +       D +
Sbjct: 424 AGAVDAGGSDSITEVGDRAEAILRGIDMLGAGDALLIAGKGHETGQVVGDAV-LPFDDVE 482

Query: 488 II 489
             
Sbjct: 483 QA 484


>gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
 gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
          Length = 483

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 224/489 (45%), Positives = 309/489 (63%), Gaps = 13/489 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L    F E I    +F M     +I  +++DSR +  G++FVA+ GN++DG  +I  AI 
Sbjct: 2   LFGTVFTECIENSRLFSM-----EITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIK 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+AIV      L++FS       P+L V + R  L++ A+R YG  PE ++AVTGTSG
Sbjct: 57  RGAQAIVTDCNAVLENFS------VPVLRVLDVRHSLAIAAARFYGSQPEIVVAVTGTSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SV SF++QI    GL +  IG    +S    D    TTP P+ L + L  +S++GVTH
Sbjct: 111 KTSVVSFLRQIWTHVGLCAASIGTVGIVSPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTH 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH+  + Y  AKMRLF+ LLP+++PA
Sbjct: 171 AALEASSHGLDQSRLDGVRLTAAAFTNLGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPA 230

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +++ADD YS++V+     A  R+L++G +GKFI + ++     KQ V   VE   + F  
Sbjct: 231 LVFADDIYSQKVIDIVTKARRRILTIGRKGKFITINRIEHQRLKQCVECRVENNIYTFDL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G FQV NAL+AAGL IA G+    V   LE L   PGR E VG       +Y+DYAH
Sbjct: 291 PLAGNFQVTNALMAAGLAIATGVSPKKVFHSLEILQGAPGRLELVGKTENNAPVYIDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +LE +L ++R  T GR+I+VFGCGGDRDQGKRP+MGKIA + ADI IVTDDNPR+E 
Sbjct: 351 KPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRPLMGKIAENKADIVIVTDDNPRTEM 410

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           PEKIR +I+   P  IE  +R EAI  A+ +L  +D L++AGKGHE   ++   +     
Sbjct: 411 PEKIRKDILQAAPRAIEIADRGEAISYAVGLLKAEDTLIIAGKGHENGQVIG-KKTYPFS 469

Query: 485 DCDIIREIL 493
           D   + + L
Sbjct: 470 DRLKVIDAL 478


>gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 495

 Score =  355 bits (911), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 186/476 (39%), Positives = 269/476 (56%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L +  M  +E +I  +S DSR ++ G +F A+ G    G  FI  A+ QGA AI+  
Sbjct: 10  LAELGLTAMGAQEAQITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQGAAAILTD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +         S   +++  + R+ L+  A+  +G  PE  +AVTGT+GK+SVASF +
Sbjct: 70  QKGAEIAKKEIEASGAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKTSVASFTR 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++     TTP PI L + ++ ++  G+THV++EASSHGL
Sbjct: 130 QIWALLGFEAANVGTTGVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAMEASSHGL 189

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RLDG++L A  FTN  +DH+DYH   +AYFNAK  LF  +L ++  A++  +DA  +
Sbjct: 190 EQRRLDGMQLAAAGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVNRNDARFQ 249

Query: 255 EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++ + A   G  VLSVG      I +         Q V      + F+   PL G FQ  
Sbjct: 250 DISRLAEKRGQEVLSVGRDENASIRIIAQRFEPMGQTVLFEYNDRTFEVKLPLIGGFQAE 309

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL IA G D+  +   L +L  V GR E   T   G  I+VDYAHT ++L    
Sbjct: 310 NVLMAAGLAIASGADANEIFGVLPQLKTVRGRMELAATRKNGASIFVDYAHTPDALATAC 369

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GR+IVVFG GGDRD+GKRP+MG+ A   AD+  VTDDNPRSEDP  IR E++
Sbjct: 370 RALRPHVLGRLIVVFGAGGDRDKGKRPLMGQAAEAHADVIFVTDDNPRSEDPAVIRREVM 429

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G    IE  +R EAI   ++ L   DVL++AGKGHET  ++ + +     D +  
Sbjct: 430 DGCIEAIEVADRAEAILRGVDALGAGDVLLIAGKGHETGQVIGD-DVLPFDDLEQA 484


>gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 486

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 234/495 (47%), Positives = 316/495 (63%), Gaps = 14/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR +  G +FVA+ G K DG  FI
Sbjct: 1   MKLRDLAGDQFPELEAQLEG-PAGLLD--ISGLSSDSRKVAPGNVFVAVAGTKADGAGFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S A            + P+  V   R+FLS+ A+R +GK P+ ++AV
Sbjct: 58  VDAAGRGAAVAIASQAIDA---------SIPVFAVKEPRRFLSIAAARFHGKQPDTMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L + L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAYAGHTAAMIGTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAG 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T ++Y  AKMRLF+ LLP
Sbjct: 169 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +K A +AG  + +VG +G ++ LK+V    +KQ   I + G+ 
Sbjct: 229 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+++ + +  LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKVAMAALEKLVGASGRLELVGHTKDGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E  +R  AIR A+ ML   D L+VAGKGHE    + +G 
Sbjct: 409 PRSEEPASIRAEIMAAAACAAEIADRASAIREAVSMLRSGDTLIVAGKGHEEGQTI-DGV 467

Query: 480 KKMSVDCDIIREILG 494
                D   +R  L 
Sbjct: 468 TLPFSDHAEVRRALE 482


>gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
 gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
          Length = 487

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 207/502 (41%), Positives = 290/502 (57%), Gaps = 27/502 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L D++ +D                +  +  V++DSR +  G +F A+ G   DG  FIP
Sbjct: 5   RLSDILRRDL-------------DHDPFVTGVTADSRKVDKGTLFCALPGTAIDGRDFIP 51

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA+A+GA A++        D +A    ++ ++ V + R+  +L A   YG  P+  +AVT
Sbjct: 52  QALAKGAAAVLA-----PDDTAALESPDSLLVKVSDVRRAYALAAKAFYGSQPKICVAVT 106

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKAL 174
           GT+GK+SVA+F +QI    G  S  +G    + S             LTTP    +A+ L
Sbjct: 107 GTNGKTSVATFCRQIFSTLGKKSASMGTLGVVKSDIDGTETAVTGPGLTTPDAADMARHL 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S L++ GVTH+++EASSHG+DQ RLDG+ L A  FTNL +DH+DYH T +AY  AK+RLF
Sbjct: 167 SELAADGVTHLALEASSHGIDQRRLDGVSLTAAGFTNLTQDHLDYHATMEAYRCAKLRLF 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E LLP+   A++ AD             +G  V+SVG +G+ + +       + Q + I 
Sbjct: 227 ESLLPRGRTAVLNADSDAYNSFAAMCVLSGTSVMSVGERGRGLAMVGRDLTVDGQILFIE 286

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G+ ++   PL G FQ  NALVAAGLCIA G D   V+  L  L    GR E VG    
Sbjct: 287 HQGRKYETKLPLAGLFQASNALVAAGLCIAAGEDPGAVIHALSLLKGARGRLERVGAKRN 346

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +YVDYAHT + LE +LK +R  T G+++VVFGCGGDRD+GKRP MG IA  LAD AI
Sbjct: 347 AAEVYVDYAHTPDGLETVLKALRPHTQGKLVVVFGCGGDRDKGKRPQMGAIAARLADRAI 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           VTDDNPRSEDP  IRAE++ G+    +E G+R +AI  A+  L   DVLVVAGKGHE   
Sbjct: 407 VTDDNPRSEDPATIRAEVLAGMSSETVEIGDRKKAILEAVSGLKTGDVLVVAGKGHEQGQ 466

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
           I+ + +     D  ++++ L +
Sbjct: 467 IIGD-KVLPFDDVAVVQQALKV 487


>gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
          Length = 493

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 184/477 (38%), Positives = 271/477 (56%), Gaps = 1/477 (0%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + + QL +     R+  +  ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI+
Sbjct: 6   KTLFQLGLTARNGRQATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAIL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +    +    S   +++ D+ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+F
Sbjct: 66  TDAAGAQLAATELGASEAALVISDDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATF 125

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V+QI    G  +  +G T    +++     TTP PI L +AL+  + QGVTH ++EASSH
Sbjct: 126 VRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAARQGVTHAAMEASSH 185

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RLDG+ L A  FTN  +DH+DYH T + YF AK  LF  +LP+++ A+I  D   
Sbjct: 186 GLDQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADR 245

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             ++   A    C V++VG     +HL  +      Q V     G  +     L G FQ 
Sbjct: 246 GVDMAAIAEARNCPVITVGRDSGDLHLGNIQVDSTGQVVCFMHHGTQYVRRLGLIGSFQA 305

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N ++AA L IA G D   V + LE L  V GR +  GT   G  ++VDYAHT +++   
Sbjct: 306 ENVMLAAALVIACGEDPQHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIATA 365

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK +R    GR+I + G GGDRD  KRP+MG+ A + AD+  VTDDNPRSEDP  IRA +
Sbjct: 366 LKALRPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPASIRAAV 425

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G P  IE G+R EAI   ++ L   D L++AGKGHET  +V + +     D +  
Sbjct: 426 LLGAPDAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD-DVLPFDDAEQA 481


>gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
 gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
          Length = 485

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 216/500 (43%), Positives = 285/500 (57%), Gaps = 29/500 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+ +D                +  I  V+SDSR +  G +FVA+ G   DG  FIPQ
Sbjct: 6   LSDLLRRDVA-------------SDPIITGVTSDSRKVAPGALFVALPGTAADGRAFIPQ 52

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVT 121
           A+AQGA A++          + T  S  P+LV   + R+  ++ A   YG  P   +AVT
Sbjct: 53  ALAQGAAAVLA--------PTDTPDSAAPVLVTSGDVRRAYAIAARGFYGAQPRTCVAVT 104

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ------DNRLTTPSPIYLAKALS 175
           GT+GK+SVA+F +QI    G  S  +G    +              LT+P     A+ ++
Sbjct: 105 GTNGKTSVAAFCRQIWAGLGHKSASMGTLGVVGQKGDRTYALTGPGLTSPDAAEAARLMA 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L+++ VTHV+VEASSHG+DQ RLDG+ L A +FTNL +DH+DYH T   Y  AKMRLFE
Sbjct: 165 ELAAKDVTHVAVEASSHGIDQRRLDGVALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFE 224

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LLP+   A++ AD          +  AG  V+ VG +G+ + L    A    Q++T+ V
Sbjct: 225 ALLPRGRTAVLNADSDAYSAFAAASIMAGLGVMGVGERGRDLALIGRQATPEGQRLTLDV 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G   D L PL G FQ  NALVAAGLCIA G     V+  LE L    GR + +   +  
Sbjct: 285 RGDVRDILLPLAGAFQASNALVAAGLCIAAGDRPDEVISALEGLTGAQGRLQRIAAETGR 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           G +YVDYAHT + LE +L  +R   +GR+IVVFG GGDRD+GKRP+MG+IA  LAD+AIV
Sbjct: 345 GEVYVDYAHTPDGLETVLTALRPHATGRLIVVFGAGGDRDRGKRPLMGEIAGRLADVAIV 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA++  G P  +E G+R  AI  AIEM+   DV+V+AGKGHE   IV
Sbjct: 405 TDDNPRSEDPASIRAQVRAGCPEALEIGDRRAAIEAAIEMMRDGDVVVIAGKGHEQGQIV 464

Query: 476 TNGEKKMSVDCDIIREILGL 495
             G      D  +  E L L
Sbjct: 465 G-GTTHPFDDATVASEALSL 483


>gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
 gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
          Length = 483

 Score =  354 bits (909), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 217/475 (45%), Positives = 303/475 (63%), Gaps = 8/475 (1%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +        +I  +S+DSR I  G+IFVA+ G+++DG  +I  A+ +GA+AIV      L
Sbjct: 11  LEDENLSSMEITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIVTDCNVVL 70

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++ S       P+L V + R  L++ A+R YG  PE ++AVTGTSGK+SV SF++QI  +
Sbjct: 71  ENLS------VPLLRVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTK 124

Query: 140 SGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            GL +  IG    +S    D   LTTP P++L + LS ++++GVTH ++EASSHGLDQ R
Sbjct: 125 VGLCAASIGTLGVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCR 184

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LDG++L A +FTNLGRDH+DYH + + Y  AKMRLF+ LLP+++ A+I+ADD YS++V+ 
Sbjct: 185 LDGVRLTAAAFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVID 244

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
               A   VL++G +G+FI + ++    +KQ V   +E   + F  PL G+FQV NAL+A
Sbjct: 245 TLTQARRHVLTIGRKGQFITINRIEHQRSKQCVECRLENNIYTFNLPLAGDFQVNNALMA 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AGL I+ GI    V   LE L   PGR E VG       +Y+DYAH   +LE +L ++R 
Sbjct: 305 AGLAISTGISPDKVFRSLETLQGAPGRLELVGKTENNASVYIDYAHKPEALEQVLLSVRP 364

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            T GR+I+VFGCGGDRDQGKRP+MGKIA + ADI I+TDDNPR+E P KIR +I+   P 
Sbjct: 365 FTQGRLILVFGCGGDRDQGKRPLMGKIAENKADIVIITDDNPRTEMPAKIRKDILQAAPK 424

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            IE  +R EAI  A+ +L   D L++AGKGHE   I+   +     D     E L
Sbjct: 425 AIEIADRGEAITYAVGLLKAGDTLIIAGKGHENGQIIG-QKTYPFSDRLKAIEAL 478


>gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 495

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 190/476 (39%), Positives = 264/476 (55%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +     ++ +I  +S DSR ++ G +F A+ G+K  G  FI  A+   A AI+  
Sbjct: 9   LSALGLRAKGGQDVEITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYALRMEAAAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +         S T ++V ++ R  L+  A+  +G  PE ++AVTGT+GK+SVASF +
Sbjct: 69  REGARIAADELAASKTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGTNGKTSVASFTR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    GL +  IG T    +FA  +  TTP PI L + L+ +S  GVTH ++EASSHGL
Sbjct: 129 QIWTELGLMAANIGTTGVEGAFAAPSPHTTPEPITLHRLLAEMSQAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RL+G+ L A  FTN  +DH+DYH +   YF AK RLF  +LP +  A++  DD   +
Sbjct: 189 DQRRLEGVHLAAAGFTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGVAVLNVDDPRGR 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           E+ + A   G  V+S+G        L         QQ+     G+       L G FQ  
Sbjct: 249 ELEEIAQERGQEVISIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTVQLDLIGGFQAE 308

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N LVAAGL IA G D   V      L  V GR +       G  I+VDYAHT ++L   L
Sbjct: 309 NVLVAAGLAIASGSDPDEVFATFPALTTVRGRMQLAAKRDNGAAIFVDYAHTPDALATAL 368

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    G+++VVFG GGDRD  KR +MGK A D AD+ IVTDDNPR+EDP  IRA ++
Sbjct: 369 EALRPHVMGKLVVVFGAGGDRDTTKRKLMGKAAADYADVVIVTDDNPRTEDPAAIRAMVL 428

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P   E G+R EAI   ++ML+  D L++AGKGHET  IV + +     D +  
Sbjct: 429 EGCPDANEYGDRAEAILRGVDMLDPGDALLIAGKGHETGQIVGD-DVLPFDDAEQA 483


>gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
          Length = 483

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 166/499 (33%), Positives = 263/499 (52%), Gaps = 27/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ ++ +   EL+           + +I E+  DSR++++G +FV I G   DGH ++
Sbjct: 1   MNLKKILKEIKYELLKGND-------DLEIREIQYDSRNVKSGDLFVCIEGYSTDGHKYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A++ GA A++ S             +   ++  ++TRK L+L ++  Y    +   ++
Sbjct: 54  SSAVSNGAAAVICSKDIENL-------TECTVIKTEDTRKVLALASANYYDHPSDKLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I +  G     +G  +            TTP  + L K  + +
Sbjct: 107 GITGTNGKTTSTFMMKSILEAQGYKVGLLGTIANYVGDKKIPAHRTTPESLELQKLFAEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +  +E SSH L   R+ G+K     FTNL RDH+D+H+T + Y+NAK+ LF+  
Sbjct: 167 VEEGVNYCIMEVSSHSLYLDRVYGVKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKNT 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      ++  DD Y + V + +   G +      +   +    +       +  I+ + 
Sbjct: 227 LSS----VVNIDDEYGERVYEDSE--GKKTSYAIDKVADVKGSNLHMHSRGVEFDITYKN 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           +       +PG++ V NAL +A  C+  G+  A V E LE +  VPGR E V  N   G 
Sbjct: 281 ETQHINLNIPGKYNVMNALGSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGY 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE ILK  R  T G++I VFGCGGDRD  KRPIMGKI  +L+D A++T
Sbjct: 341 EVIVDYAHTPDGLENILKTAREFTKGKLISVFGCGGDRDNTKRPIMGKIGTELSDKAVIT 400

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+EDP  I  E++ G+    +I   NR EAI+ A+EM  K DV+VVAGKGHE   I
Sbjct: 401 SDNPRTEDPMSIIKEVVAGVEKDNYIVVENRREAIKKAMEMAKKDDVIVVAGKGHEDYQI 460

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + + +     + ++I EI+
Sbjct: 461 LKD-KTIHFDEREVIAEII 478


>gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
 gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
          Length = 482

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 168/499 (33%), Positives = 266/499 (53%), Gaps = 27/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  Q+LI +  P++++        + +  I  +  +S+ I+ G IFVAI G   DGH FI
Sbjct: 1   MNAQELI-QIIPDILS-----VKGYTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
           P+A+ +GA  ++   A  L             + V ++RK L+L ++  YG       ++
Sbjct: 55  PEALERGAGVVIGEKALDL--------GGKLYIRVKDSRKALALSSAWFYGYPADKLKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGTSGK++V   + ++ +  G+ +  IG    + ++       TTP  + L +  S +
Sbjct: 107 GVTGTSGKTTVTYLISEMLKDIGICTGIIGTIGNVLNNRKLPTSHTTPESLELNQLFSKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + ++++E SSH L   R++GIK   G FTNL +DH+D+H+T + YFN+K +LF + 
Sbjct: 167 VEENIEYLAMEVSSHSLKLQRVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFSQS 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+I  DD   K ++   +    R      +   +  + +    N     +    
Sbjct: 227 KQ----AVINIDDESGKRLLSIINIP--RYTYGLDKKADLRAENIRMTANGVSYDLVFRN 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K +   +  PG F VYN+L A    +A+G     ++  L+K   VPGRFE V  N++G  
Sbjct: 281 KIYPVFYSTPGLFSVYNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELV-ENNQGII 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAH  + L+ +L  IR   +G+II VFGCGGDRD+GKRPIMGKI+ +L+D  I+T 
Sbjct: 340 VIVDYAHKPDGLKNVLLTIREFCTGKIITVFGCGGDRDKGKRPIMGKISSELSDYTIITS 399

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPRSE PE I  +I  GI    + +   R EAI+ AI +  K D +++AGKGHET  I 
Sbjct: 400 DNPRSEKPEAIIEQIESGIIGDNYEKITERAEAIKKAISIAKKGDAVLIAGKGHETYQIF 459

Query: 476 TNGEKKMSVDCDIIREILG 494
            + +     D ++ +E L 
Sbjct: 460 ND-KIIHFDDREVAKECLS 477


>gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
          Length = 484

 Score =  354 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 230/495 (46%), Positives = 317/495 (64%), Gaps = 16/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL           L +      + ++  +SSDSR ++ G IF A+ G+K DG  + 
Sbjct: 1   MKLRDL--------DGILPVEGTASADLEVTGISSDSRQVKPGVIFFALAGSKADGSAYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA AIV +   ++           P+L VD+ R  L+L A+R +G  P+ ++AV
Sbjct: 53  ADAARRGAVAIVTAKGSTVGGHP------IPVLAVDDPRLALALGAARFFGNQPQTMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +++G ++  IG T  ++    +   LTTP P+ L + L  L+ 
Sbjct: 107 TGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLKELAD 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ LLP
Sbjct: 167 AGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S   ++ A  AG  VL+VG  G F+ LK+V    ++Q+  +   G  
Sbjct: 227 KGAPAVIFADDPWSAPTIQAARAAGLEVLTVGRHGDFLRLKRVEHERHRQRAEVEANGVL 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQ+ NALV+AGL I+ GI +A  L  LEKL   PGR + VGT + G  +Y
Sbjct: 287 YEIDLPLAGDFQISNALVSAGLAISTGIPTAKALMSLEKLKGAPGRLDLVGTTANGAPVY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPDALENVLTSVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE    + + E
Sbjct: 407 PRSEVPETIRAAIMAAAPGAIEIGDRRKAIHDAVAMLDAGDTLIVAGKGHEEGQTIGS-E 465

Query: 480 KKMSVDCDIIREILG 494
                D + +R  L 
Sbjct: 466 TLHFSDHEEVRAALR 480


>gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella schoenbuchensis R1]
          Length = 483

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 217/470 (46%), Positives = 289/470 (61%), Gaps = 8/470 (1%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
               +I  +SSDSR +  G++FVA+ G + DG  ++  AI +GA  IV     +L+    
Sbjct: 16  LASIEITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIVTDYNCALEGVY- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P+L V + R  L++ A+R YG  PE + AVTGTSGK+SV SFV+QI + +G  +
Sbjct: 75  -----VPVLRVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTSVVSFVRQIWKHAGFCA 129

Query: 145 FQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG    +S    D   LTTP P+ L + L  ++ +GVTH ++EASSHGLDQ RLDG++
Sbjct: 130 ASIGTVGVVSPKRNDYGSLTTPDPVMLQRLLCEIAGEGVTHAALEASSHGLDQGRLDGVR 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L A +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PAII+ADD YS++V+     A
Sbjct: 190 LAAAAFTNLGRDHMDYHPCVEDYLRAKMRLFDTLLPCDAPAIIFADDVYSQKVIDHVTRA 249

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G  VL++G  GKFI + ++     KQ V   +    + F  PL GEFQV NAL+AAGL I
Sbjct: 250 GRPVLTIGRSGKFITINRIEHQRLKQCVECRMGNDIYTFDLPLAGEFQVTNALMAAGLAI 309

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A  +  + V   L+KL   PGR E VG       +YVDYAH   +LE +L ++R  T GR
Sbjct: 310 ATNVPPSSVFRSLKKLQGAPGRLELVGNTKDNAFVYVDYAHKPEALEQVLLSVRPFTLGR 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +I+VFGCGGDRDQGKRP+MGKIA   ADI IVTDDNPR+EDP KIR +I+    G +E  
Sbjct: 370 LILVFGCGGDRDQGKRPLMGKIAASKADIVIVTDDNPRTEDPAKIRKDILQAASGAMEIA 429

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R EAI  A+ +L   D L++AGKGHE   I+         D       L
Sbjct: 430 DRGEAIDYAVRLLEAGDTLIIAGKGHENGQIIG-KTTYPFSDHLRAVSAL 478


>gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
 gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
          Length = 493

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 178/479 (37%), Positives = 263/479 (54%), Gaps = 2/479 (0%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            + +  L +     R+  I  ++ DSR ++ G++F A+ G    G  FI  A+ QGA AI
Sbjct: 4   IKTLAALGLTAQAGRQANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYALRQGAGAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +  +  +         S+  ++V ++ R+ L+  A+  +G  PE ++AVTGT+GK+SVA+
Sbjct: 64  LTDATGARLAQDFLSLSDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGTNGKTSVAT 123

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           F +QI +R GL++  +G T    +++     TTP PI L + L+     GVTH ++EASS
Sbjct: 124 FTRQIWERMGLAAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVTHGAMEASS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL Q RLDG+ L+A  FTN  +DH+DYH +   YF AK  LF  +LP++  A+I  DD 
Sbjct: 184 HGLAQRRLDGVHLMAAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGVAVINIDDP 243

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              E+   A   G  +++VG   G  + L         Q +    E +       L G F
Sbjct: 244 RGAEMAAIATERGQDLITVGRAPGADLRLIAQRFDATGQVLRFEWEDEVNQLRLDLIGGF 303

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  N L+AAGL I  G D+  V E L  +  V GR +   T   G  ++VDYAHT +++ 
Sbjct: 304 QAENVLLAAGLVIGAGADAEQVFEVLPDMRTVRGRMQLAATRDNGAAVFVDYAHTPDAVA 363

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +K +R    GR+I + G GGDRD+ KRP+MG+ A   AD  IVTDDNPRSE+P  IRA
Sbjct: 364 TAIKALRPHVMGRLIAIVGAGGDRDRAKRPLMGQAAAAHADRVIVTDDNPRSENPASIRA 423

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            ++ G P   + G+R EAI   ++ L   D L++ GKGHET  IV + +     D +  
Sbjct: 424 AVMQGCPKATDVGDRAEAILRGVDALGPGDALLICGKGHETGQIVGD-DVLPFNDVEQA 481


>gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 485

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 195/486 (40%), Positives = 284/486 (58%), Gaps = 11/486 (2%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   +L+ +    P      ++  ++ DSR ++ G +F A+ G K DG  FIP AI +GA
Sbjct: 3   RTLADLLPETLSAPQGADGVEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             I+             + +  P++  ++  + LS  A+  Y + P  I A+TGT+GKSS
Sbjct: 63  VCILA---------PKGVTAPVPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSS 113

Query: 129 VASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
              F++QI  ++G+ +  +G    T +S   D   TTP  I L K+L  L+ +GVTH+++
Sbjct: 114 TVEFLRQIWAKAGIEAAALGTLGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAM 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL Q R+DG++L    FTNL +DH+DYH   + YF++KMRLF  L P  +PA+I 
Sbjct: 174 EASSHGLKQRRMDGVRLSLVGFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVIN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D  +S+ V + A +AG   + +G++G+ + + ++      Q V  S +G++ +   PL 
Sbjct: 234 MDSDWSQRVAQAAQSAGLSPVEIGWRGRDLTVHEITPHPASQMVRFSWKGEEREVDLPLI 293

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEFQ  NAL AA + IA G+      E + +L  V GR + VGT   G  + +DYAHT +
Sbjct: 294 GEFQAANALGAAAMAIASGVSPDAAFEAMGQLTGVAGRLQTVGTTKDGAPVLLDYAHTPD 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L+ +L+  R  T GRII+VFG GGDRD  KR  MG+IA  L+D+AIVTDDNPRSEDP  
Sbjct: 354 GLDKLLRAARPHTQGRIILVFGAGGDRDPTKRAPMGEIAARLSDVAIVTDDNPRSEDPAG 413

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           IR  I+   PG  E G+R  AIR  IEML   DVL+VAGKGHET  I+ +       + +
Sbjct: 414 IRKTILAACPGAQEIGDREAAIRAGIEMLKAGDVLLVAGKGHETGQILAD-RIIPFDETE 472

Query: 488 IIREIL 493
           I+  IL
Sbjct: 473 IVTRIL 478


>gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
 gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
          Length = 503

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 185/482 (38%), Positives = 264/482 (54%), Gaps = 8/482 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +     RE  I  +S DSR ++ G +F A+ G K  G  FI  A+  GA AI+  
Sbjct: 12  LAALGLRGQGGREATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILTD 71

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +    +    S   +++ ++ R  L+L AS  +G HPE ++AVTGT+GK+SV++F +
Sbjct: 72  AQGAQIAANELAESTAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFAR 131

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI     L++  +G T    ++    + TTP PI L + L++  S  +THV+VEASSHGL
Sbjct: 132 QIWIEMNLAAVNLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVAVEASSHGL 191

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN   DH+DYH+T +AYF+AKM LF  LLP++  A+I  DD    
Sbjct: 192 DQRRLDGVVLSAAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDPKGP 251

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV++ A N G   ++VG        L         Q++    +         L G FQ  
Sbjct: 252 EVVQIAQNRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKLIGGFQAD 311

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A  L IA G D   V + L  L  V GR +   T   GG ++VDYAHT +++   L
Sbjct: 312 NVLLATALVIAAGGDPEEVFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATAL 371

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R    G++I + G GGDRD GKRP+MG+ A   AD+  VTDDNPRSEDP  IRA ++
Sbjct: 372 MAMRPHVMGKLIAIVGAGGDRDTGKRPLMGQAAAQNADMVFVTDDNPRSEDPATIRAAVM 431

Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G          IE G+R EAI   ++ L   D L++AGKGHE+  I+ + +     D +
Sbjct: 432 VGALENAAGKSVIEVGDRAEAILRGVDALGPGDALLIAGKGHESGQIIGD-DVLPFDDVE 490

Query: 488 II 489
             
Sbjct: 491 QA 492


>gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
 gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
          Length = 498

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 169/501 (33%), Positives = 251/501 (50%), Gaps = 16/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+  +       L        + +I  ++++S   + G +F+ + G + DG  F 
Sbjct: 1   MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117
           P AIA GA A +VS + +      T     P ++   +     +  A+  Y    +   +
Sbjct: 55  PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTTACAEIATAFYNHPAQTLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ +       +  +G   T     Q+    TTP  + L   L+ 
Sbjct: 115 VGVTGTNGKTTTTHLIEFLLSNLDQPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK  LF +
Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFRVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +  AII ADD Y K++M R  +      SV      I    +       +  +   
Sbjct: 235 D-YLQGKAIINADDDYGKKLMARLGSDRFWSYSVSDPSADIWADSLVYQPTGIKGVLHTP 293

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRG 355
                F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E V  +  + 
Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVQLSPEQD 353

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V
Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +I+ GIP     I  G+R +AIRTAI+     D +++AGKGHE  
Sbjct: 414 TSDNPRTEDPDRILQDILAGIPADVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKGHEDY 473

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   EK    D +  R+ L
Sbjct: 474 QIIGT-EKVHFDDREQARDAL 493


>gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Ahrensia sp. R2A130]
 gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Ahrensia sp. R2A130]
          Length = 1015

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 214/497 (43%), Positives = 289/497 (58%), Gaps = 15/497 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+    PE                I  V+ DSR ++ G +F+A+ G+ +DG  F+
Sbjct: 1   MRLNDLLGGGLPEASRD------DVGALDITNVTVDSRKVKPGGLFIAVSGSAQDGAKFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+  GA A++      +   S       P+L   N RK L+  ASR + + PE I AV
Sbjct: 55  PMAVENGAVAVLADRDADIGKIS------VPVLRNGNIRKALANIASRFHPRQPEIIAAV 108

Query: 121 TGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLS 178
           TGT+GK+SVASF++QI   +       IG T   +    D   LTTP P+ L + L  L+
Sbjct: 109 TGTAGKTSVASFLRQIWGHKDDAVPAMIGTTGVFAPGRSDYGSLTTPDPVKLHELLDELA 168

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GVTH ++EASSHGLDQ RLDG++L    FTNLGRDH+DYH   + Y  AK+RLF +LL
Sbjct: 169 GEGVTHCAMEASSHGLDQMRLDGVRLAVAGFTNLGRDHLDYHADIEEYLTAKLRLFGDLL 228

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
               PA+IYADD +S  V+  A   G  V +VG +G+FI +K++      Q   +  +G+
Sbjct: 229 KPGQPAVIYADDEFSGRVIDHAEFHGLDVKTVGREGEFIAVKRIEQHRTSQVAEVVCDGE 288

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +    PL GEFQ+ NALVAAG+ IA G+++      L  L    GR E +G  + G   
Sbjct: 289 TYRVELPLAGEFQLANALVAAGMAIASGMEAKAAFIALTTLEGASGRLELIGKTTEGAAC 348

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAH   +LE +L  +R  T+G++++VFGCGGDRD GKR IMG+IA  +AD  IVTDD
Sbjct: 349 YVDYAHKPEALENVLAALRPYTTGQLVLVFGCGGDRDPGKRAIMGEIAARMADRVIVTDD 408

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPRSE+P  IRA I+   P   E G+R EAI  A+E L   D L+VAGKGHE   IV + 
Sbjct: 409 NPRSENPGSIRAAIMEAAPDATEIGDRYEAIINAVEGLGSGDTLIVAGKGHEEGQIVGD- 467

Query: 479 EKKMSVDCDIIREILGL 495
                 D  ++RE L L
Sbjct: 468 TVLPFSDHAVLREALAL 484



 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 86/462 (18%), Positives = 158/462 (34%), Gaps = 42/462 (9%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
              P    E  I  +S D+R +Q G  + AI G+  DGH F+  A A GA   VV+  + 
Sbjct: 555 GWLPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVAAAHAAGATVSVVAKDWV 614

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            +      R    +LVVD+    L         +    ++A+TG+ GK++    ++    
Sbjct: 615 GRLEGDCGR----LLVVDDVLHALVRLGLAARARTSAQVVAITGSVGKTTTKEMLRTGLA 670

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G     +   +               P+ LA+  +         + +  +  G     
Sbjct: 671 ACGHVHAAVASFNNHWGV----------PLTLARMPAD---SDFAVIEIGMNHPGEITPL 717

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +   +       N+   H+    +     +A      + L     A++ ADD     ++ 
Sbjct: 718 VQMTRPHVAIINNVAAVHLGAFDSVDEIAHA-KSEIFDGLIPGGTAVLNADDERLPIMLD 776

Query: 259 RAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           RA  A               + L+K+  + +   ++ +V G+        PG     NAL
Sbjct: 777 RATEAEVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNAL 836

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMIL 373
           V   +      D A V   L ++  V GR +    +  +G  + +D  Y     S+   L
Sbjct: 837 VVLAVAKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDESYNANPTSMAASL 896

Query: 374 K---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDDNPRSEDPE 426
               +      GR I V G   +       +   IA  ++D       +   + R+    
Sbjct: 897 DLLGSREPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRISRVFLAGSDMRA---- 952

Query: 427 KIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVV 464
               + +    G         + I AI    + +   DV++V
Sbjct: 953 --LRDTLMNTKGVHVTWCDTADEIGAILA--DEIRSGDVVMV 990


>gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
 gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
          Length = 493

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 182/477 (38%), Positives = 272/477 (57%), Gaps = 1/477 (0%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + ++QL +     R+  +  ++ DSR ++ G++F A+ G++  G  FI  A+  GA AI+
Sbjct: 6   KTLSQLGLTARDGRQAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGASAIL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +    +    S+  +++ D+ R+ L+  A+  +G  P+ ++AVTGT+GK+SVA+F
Sbjct: 66  TDIVGARLAATELGASDAALVISDDPREALARTAALWFGAQPKTMIAVTGTNGKTSVATF 125

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V+QI    G  +  +G T    +++     TTP PI L +AL+  + +GVTH ++EASSH
Sbjct: 126 VRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAAREGVTHAAMEASSH 185

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RLDG+ L A  FTN  +DH+DYH T + YF AK  LF  +LP+++ A+I  D   
Sbjct: 186 GLDQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVINIDVDR 245

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             ++   A    C V++VG     +HL  +      Q V     GK +     L G FQ 
Sbjct: 246 GVDMAAIAKARNCPVITVGRDSGDLHLGNIQVDATGQVVCFMHHGKQYVRRLGLIGGFQA 305

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N ++AA L IA G +   V + LE L  V GR +  GT   G  ++VDYAHT +++   
Sbjct: 306 ENVMLAAALVIACGEEPPHVFDTLEHLSTVRGRMQLAGTRDNGATVFVDYAHTPDAIATA 365

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK +R    GR+I + G GGDRD  KRP+MG+ A + AD+  VTDDNPRSEDP  IRA +
Sbjct: 366 LKALRPHVVGRLIAIVGAGGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPATIRAAV 425

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G P  IE G+R EAI   ++ L   D L++AGKGHET  +V + +     D +  
Sbjct: 426 LLGAPEAIEVGDRAEAILRGVDALGPGDALLIAGKGHETGQVVGD-DVLPFDDAEQA 481


>gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 488

 Score =  352 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 152/502 (30%), Positives = 254/502 (50%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++LI     + +          ++  I  +  DSR ++ G++FV I G   DGH FI
Sbjct: 3   MVLRELIKDLKEKRVEGR-------QDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P+AI +G+  +VV               +  ++ V NTR  L++ A+R YG   +   ++
Sbjct: 56  PEAIKRGSRVVVVEKDVK-------TAKDVTVIKVPNTRYALAVLANRFYGYPSKKLQVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            + GT+GK++    V+ + +++G      G       +       TTP  + L   L+ L
Sbjct: 109 GIAGTNGKTTTTYLVRDVLKKAGKKVALFGTIEYDLGNRTLPASTTTPQSLELQAMLNEL 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++   +V +E S+H     R+ G +   G FTN+ RDH+D+H+T + Y  A+++ F  L
Sbjct: 169 VNKEFEYVVMEVSTHATVLDRVTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFFRLL 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+I  DD Y++ ++K           +  +   I    +       +  +    
Sbjct: 229 SRTGRRAVINIDDPYAEHIIK-NTRTEILTYGINDKNADIRAFDIKVSKTGSRFNVITPL 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +  F   LPG + VYNAL A G+ I+ G++   + E +     VPGRFE +    +   
Sbjct: 288 GETVFYLRLPGRYNVYNALAAVGVGISEGLNLNEIREAIAHA-SVPGRFERIDCG-QSFD 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L+  L+  R ++ GRIIVVFGCG D+D  +RP+MG +A  ++DIAI+T 
Sbjct: 346 VIVDYAHTPDALQKALETARGLSEGRIIVVFGCGDDKD--RRPLMGVVAARMSDIAILTS 403

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DN R+E+P +I ++I  GI        ++   +R EAI  A+EM  + D++++AGKGHE 
Sbjct: 404 DNSRNEEPSEIISDIESGIKKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKGHEE 463

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +  K    D  +   IL
Sbjct: 464 YQIIKD-RKIPFNDRKVAERIL 484


>gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
 gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
          Length = 497

 Score =  352 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 180/482 (37%), Positives = 267/482 (55%), Gaps = 2/482 (0%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
               + + +L +      +  +  +S DSR  + G +F A+ G    G  FI  A+ +GA
Sbjct: 5   NAMRKSLTELGLTAQGGAQALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A++  +  +         +   ++V ++ R+ LS  A+  YG  PE ++AVTGT+GK+S
Sbjct: 65  AAVLTDAEGAALARDLLDGAAVALVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTS 124

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           VASF +QI    G  +  +G T    ++      TTP PI L + L+   + GVTH ++E
Sbjct: 125 VASFTRQIWAELGFEAVNLGTTGVEGAYQVPLAHTTPEPITLHRVLAECQAAGVTHAAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGL Q RLDG++L A  FTN  +DH+DYH +   YF+AK  LF  +LP++  A+I  
Sbjct: 185 ASSHGLAQRRLDGVQLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINI 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD    E+ + A + G  +L VG + +   + +        Q +    EG+ +    PL 
Sbjct: 245 DDPRGAEMAEIARHRGQGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLI 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G FQ  N L+AAGL IA G D + V + L ++  V GR E   T   G  ++VDYAHT +
Sbjct: 305 GGFQGENLLLAAGLAIATGADPSRVFDTLPQMRTVRGRMELAATRENGAAVFVDYAHTPD 364

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++   ++ +R    GR+I + G GGDRD GKRP+MG+ A + AD  IVTDDNPRSEDP  
Sbjct: 365 AVGTAIRALRPHVMGRLIAIVGAGGDRDAGKRPLMGRAAGEHADQVIVTDDNPRSEDPAL 424

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           IRA ++ G P  +E G+R EAI   ++ML   D L++ GKGHET   V + +     DC+
Sbjct: 425 IRAAVLEGCPEALEMGDRAEAILRGVDMLGPGDALLILGKGHETGQTVGD-DVLPFDDCE 483

Query: 488 II 489
             
Sbjct: 484 QA 485


>gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella bacilliformis KC583]
 gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella
           bacilliformis KC583]
          Length = 483

 Score =  352 bits (902), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 224/471 (47%), Positives = 292/471 (61%), Gaps = 8/471 (1%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                KI  +S++SR I  G++FVA+ GNK DG  +I  AI +GA  +V    +  ++ S
Sbjct: 15  NLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P+L V + R  L+L A+R Y   PE +LAVTGTSGK+SV SF++QI Q  G  
Sbjct: 75  ------VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFC 128

Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG    +S    D   LTTP P+ L + L  L+ +GVTH ++EASSHGLDQ RLDG+
Sbjct: 129 AASIGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRLDGV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            L A +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PA+I ADD YS+EV+     
Sbjct: 189 NLAAAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQ 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           AG R L++G +G+FI + ++    +KQ V   +E   + F  PL G FQV NAL+AAGL 
Sbjct: 249 AGRRALTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I  G  S  V   L+KL   PGR E V        +YVDYAH   +LE +L   R  T G
Sbjct: 309 ITTGSSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPG 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           R+IVVFGCGGDRDQGKRP+MGKIA+D ADI IVTDDNPR+E+PEKIR +I+   PG +E 
Sbjct: 369 RLIVVFGCGGDRDQGKRPLMGKIAVDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEI 428

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R EAI  A+ +L   D L++AGKGHE   +V   E +   D       L
Sbjct: 429 ADRSEAIYYAVGLLEAGDTLIIAGKGHENGQVVG-QETRPFSDRLEAISAL 478


>gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrospira platensis str. Paraca]
          Length = 498

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 170/501 (33%), Positives = 250/501 (49%), Gaps = 16/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+  +       L        + +I  ++++S   + G +F+ + G + DG  F 
Sbjct: 1   MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117
           P AIA GA A +VS + +      T     P ++   +  K  +  A+  Y    +   +
Sbjct: 55  PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFYNHPAQTLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ +       +  +G   T     Q+    TTP  + L   L+ 
Sbjct: 115 VGVTGTNGKTTTTHLIEFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK  LF +
Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +  AII ADD Y K++M R         SV      I    +       Q  +   
Sbjct: 235 D-YLQGKAIINADDDYGKKLMARLGGDRVWSYSVSDPSTDIWADSLVYQPTGIQGVLHTP 293

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RG 355
                F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E V  +  + 
Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDSLPAFGGVPGRMERVKISPEQN 353

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V
Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +++ GIP     I  G+R +AIRTAI      D +++AGKGHE  
Sbjct: 414 TSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAINEAQPGDGVLIAGKGHEDY 473

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   EK    D +  R+ L
Sbjct: 474 QILGT-EKVHFDDREQARDAL 493


>gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 498

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 153/509 (30%), Positives = 244/509 (47%), Gaps = 32/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+ L           ++          +  +++DSR ++ G +FVA+ G+  DGH F 
Sbjct: 1   MRLRQLFQPF-------VNFQVTNAENPDVVNITTDSRDVEPGSLFVAVRGHTVDGHRFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+ +GA A++V    +       + ++ P +VV +TR + +L A RL+G       ++
Sbjct: 54  RQAVERGAVAVMVEEPVAE------VPASIPQVVVPDTRHWSALVADRLFGSPSRELRVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   V+ +   +G  +  IG         +     TTP  + + + L   
Sbjct: 108 GVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTVGAKLGQASWPLPNTTPEAVEVHRWLRRF 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231
              G TH  +E SSH L + R  G+     +FTNL +DH+D+H T + Y  AK       
Sbjct: 168 VDAGATHAVMEVSSHALVERRAAGVSFACAAFTNLTQDHLDFHGTMERYAGAKALLFSRL 227

Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                +   +   A+I  DD +S  + + +            +   +  + V    +  +
Sbjct: 228 GNGTGDDPARSVYAVINVDDPWSSVMAEASAAPILTYGI--ERAGDVRARDVRLSASGAR 285

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +      F+   PL G F VYN L A  + +  G+    + E +     VPGR E + 
Sbjct: 286 FFVDSPAGAFEIETPLIGRFNVYNTLAAVAIALVEGLTPTEIQEGIRSYPSVPGRMERI- 344

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   ++VDYAHT + LE +L ++R     R++VV GCGGDRD+ KRP M ++A+ LA
Sbjct: 345 DEGQPFSVFVDYAHTPDGLENVLASVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRLA 404

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D AI T DNPRSEDP  I A++  G+         E+ +R  AI  AI      DV+V+A
Sbjct: 405 DRAIFTSDNPRSEDPVAILADMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIA 464

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKGHE   I+   EK+   D +  R  + 
Sbjct: 465 GKGHEDYQIIGA-EKRHFDDREEARRAIR 492


>gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Arthrospira platensis NIES-39]
          Length = 498

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 170/501 (33%), Positives = 251/501 (50%), Gaps = 16/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+  +       L        + +I  ++++S   + G +F+ + G + DG  F 
Sbjct: 1   MKLKDLLNPNL------LPPEYHPALDMEITGLATNSHACKPGDLFLGMPGTRVDGGDFW 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYGKHPE--NI 117
           P AIA GA A +VS + +      T     P ++   +  K  +  A+  Y    +   +
Sbjct: 55  PSAIASGAVAAIVSQSAASNTPPETDSDTIPCVIPAADMTKACAEIATAFYNHPAQTLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ +       +  +G   T     Q+    TTP  + L   L+ 
Sbjct: 115 VGVTGTNGKTTTTHLIEFLLTNVDKPTALLGTLYTRWPGFQEVAVHTTPFAVELQHQLAD 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G     +E SSH L Q R+ G       FTNL +DH+DYH T   YF AK  LF +
Sbjct: 175 AVGAGCQFGVMEVSSHALHQGRVLGCPFQVAVFTNLTQDHLDYHPTMDDYFEAKALLFSD 234

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +  AII ADD Y K++M R         SV      I    +       Q  +   
Sbjct: 235 D-YLQGKAIINADDDYGKKLMARLGGDRVWSYSVSDPSADIWADSLVYQPTGIQGVLHTP 293

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RG 355
                F  PL G++ + N L A G  +A+G+D + +++ L     VPGR E V  +  + 
Sbjct: 294 MGSASFSLPLVGQYNLSNLLAALGAGLALGLDLSAMVDCLPAFGGVPGRMERVQISPEQN 353

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DL+D+A+V
Sbjct: 354 ITVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLSDLAVV 413

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +++ GIP     I  G+R +AIRTAI+     D +++AGKGHE  
Sbjct: 414 TSDNPRTEDPDRILQDVLAGIPDHVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKGHEDY 473

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   EK    D +  R+ L
Sbjct: 474 QILGT-EKVHFDDREQARDAL 493


>gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. AR 15-3]
          Length = 484

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 212/495 (42%), Positives = 298/495 (60%), Gaps = 18/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L  +   +               +I  +S+DSR +  G++FVA+ GN+ DG  ++
Sbjct: 1   MLLGELFIECIKD---------DYLASIEITGISADSRQVLPGYVFVALKGNQRDGREYV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA  I+  + +  ++ S       P++ V   R  L++ A+R Y   PE ++AV
Sbjct: 52  NDAIKRGARVIITDNNFVFENLS------IPVIHVSEVRHRLAIAAARFYNSQPEIMVAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGTSGK+SV SF++QI +  G  +  IG    +S    D   LTTP P+ L + L  +++
Sbjct: 106 TGTSGKTSVVSFIRQIWEYVGFCAASIGTVGVVSPKRHDIGFLTTPDPVMLQRLLYEIAN 165

Query: 180 QG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              VTH + EASSHG+DQ R+DG+ L A +FTNLGRDH+DYH   + YF+AKMRLF  +L
Sbjct: 166 DEGVTHAAFEASSHGIDQCRIDGVHLAAAAFTNLGRDHMDYHGCIEDYFHAKMRLFNTIL 225

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P+++PA+I+ADD YS++V+     A  +VL++G  GKFI L +V     KQ+V   +   
Sbjct: 226 PQDAPALIFADDVYSQKVIDIVRQAHRKVLTIGRTGKFITLNRVEHQRLKQRVECRMGNN 285

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + F  P  G+FQV NAL+AAGL IA      +V   LEKL   PGR E VG    G  +
Sbjct: 286 IYTFDLPFSGDFQVANALMAAGLAIATNAPPDMVFRSLEKLQGPPGRLELVGKTKDGAPV 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAH   +LE +L ++R  T GR+I+VFGCGGDRD+GKR +MGKIA + AD+ IVTDD
Sbjct: 346 YVDYAHKPEALEQVLLSVRPFTQGRLILVFGCGGDRDRGKRALMGKIAENKADVVIVTDD 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPR+E PEKIR +I+  +P  IE  +R +AI  A+ +L   D L+VAGKGHE   I+   
Sbjct: 406 NPRTEAPEKIRKDILQVVPEAIEIADRGKAIDYAVRLLKAGDTLIVAGKGHENGQIIGR- 464

Query: 479 EKKMSVDCDIIREIL 493
           E     D   +   L
Sbjct: 465 ETYPFSDRLKVIAAL 479


>gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. 1-1C]
          Length = 484

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 220/495 (44%), Positives = 304/495 (61%), Gaps = 18/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L  +   +               +I  +S+DSR +  G++FVA+ GN+ DG  ++
Sbjct: 1   MLLGELFVECIKDDC---------LASIEITGISADSRQVLPGYVFVALKGNQSDGKKYV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA  I+  + +  ++ S       P++ V + R  L++ A+R Y   PE ++AV
Sbjct: 52  NDAIQRGARVIITDNNFVFENLS------IPVIHVLDARHKLAIAAARFYNSQPETVVAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SV SFV+QI +  G  +  IG    +S    D   LTTP P+ L + L  +++
Sbjct: 106 TGTSGKTSVVSFVRQIWEYIGFCAASIGTVGVVSPKRHDIGSLTTPDPVMLQRLLCEIAN 165

Query: 180 QG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              VTH + EASSHGLDQ R+DG+ L A +FTNLGRDH+DYH++ + YF+AKMRLF  LL
Sbjct: 166 DEGVTHAAFEASSHGLDQCRIDGVHLAAAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLL 225

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P+++PA+I+ADD YS++V+     A  +VL++G  GKFI L +V     KQ+V   +   
Sbjct: 226 PQDAPALIFADDVYSQKVIDTVRQAHRQVLTIGRTGKFITLNRVEHQRLKQRVECRMGNN 285

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + F  PL G+FQV NAL+AAGL IA    S +V   LEKL   PGR E VG    G  I
Sbjct: 286 IYTFDLPLAGDFQVTNALMAAGLAIATNAPSDMVFRSLEKLQGAPGRLELVGNTEDGAPI 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAH   +LE +L ++R  T GR+++VFGCGGDRDQGKR +MGKIA + ADI IVTDD
Sbjct: 346 YVDYAHKPEALEQMLLSVRPFTQGRLVLVFGCGGDRDQGKRALMGKIAGNKADIVIVTDD 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPR+E PEKIR +I+  +P  IE  +R +AI  A+E+L   D L+VAGKGHE   I+   
Sbjct: 406 NPRTEAPEKIRKDILQAVPEAIEIADRGQAIEYAVELLKAGDTLIVAGKGHENGQIIG-Q 464

Query: 479 EKKMSVDCDIIREIL 493
           E     D   +   L
Sbjct: 465 EIYPFSDRLKVIAAL 479


>gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
 gi|99038138|gb|ABF64750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
          Length = 494

 Score =  351 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 176/475 (37%), Positives = 261/475 (54%), Gaps = 1/475 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL +      + +I  ++ DSR +  G++F A+ G +  G  F+ Q + QGA AI+  
Sbjct: 9   LSQLGLTARAGLDPQITGLAVDSREVGEGFVFAALPGTRVHGATFVEQVLDQGAVAILTD 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +     A   +   ++V ++ R+ LS  A+  +G  P  + AVTGT+GK+SV++F++
Sbjct: 69  AKGAEIAGEAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVTGTNGKTSVSTFLR 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G  +  +G T    +++     TTP PI L +AL+  +  GVTH ++EASSHGL
Sbjct: 129 MIWTELGHKAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGL 188

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L A  FTN  +DH+DYH+T +AYF AK  LF  +L ++  A+I   D    
Sbjct: 189 DQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSEDGVAVINMTDPKGA 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E+   A   G  +++VG     I L  +      Q +  +   + F     L G FQ  N
Sbjct: 249 EMRAIAAARGQEIITVGRGLGDIALMGMRVDATGQDIRFTWHDRPFAKRLNLIGGFQAEN 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            LVAAGL IA G D   V + L  L  V GR +   T   G  ++VDYAHT +++   +K
Sbjct: 309 VLVAAGLAIASGEDPEQVFDTLPHLSTVRGRMQLAATRDNGATVFVDYAHTPDAVATAIK 368

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR++ + G GGDRD  KRP+MG  A D AD  IVTDDNPRSEDP  IRA ++ 
Sbjct: 369 ALRPHVLGRLVAIVGAGGDRDATKRPLMGAAAQDNADAVIVTDDNPRSEDPAAIRAAVMG 428

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G P  +  G+R EAI   ++ML   D L++ GKGHE+   +   +     D +  
Sbjct: 429 GAPDALNVGDRAEAILRGVDMLEAGDALLICGKGHESGQTIGT-DVLPFDDVEQA 482


>gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Pseudovibrio sp. JE062]
 gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Pseudovibrio sp. JE062]
          Length = 1257

 Score =  351 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 212/494 (42%), Positives = 302/494 (61%), Gaps = 6/494 (1%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL  +   E+ +     P       I+ +++DSR ++ G++F A+ G K DG  FI
Sbjct: 1   MLLKDLTKQ---EIDSAAGDGPDGAGALTISGLTADSRAVEPGFVFAALKGAKVDGAQFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  GA AI +  A  + D         P++  ++ R+ L+L A+   G+ PE ++AV
Sbjct: 58  EQAVDAGAAAI-LIDADRIDDDIRKKAKQVPLIAANDARRELALMAAAFAGRQPEKMVAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGT+GK+SVA FV+QI + +GL S  +G   T++S  Q    LTTP P+ L + L  L+ 
Sbjct: 117 TGTAGKTSVAVFVRQIFEYAGLVSASLGTIGTVTSTGQSYGGLTTPDPVSLHEDLKRLAE 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH ++EASSHGLDQHRLDG++++A  FTNLGRDH+DYH T + Y  AK+RLF +LLP
Sbjct: 177 DGITHAAMEASSHGLDQHRLDGVRIVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLP 236

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   +I  +  ++  V++ A   G +  + G+ G+ + ++ V      Q + +      
Sbjct: 237 DDGVVVIDPEAQFADRVLEVAKERGLKTFTTGFFGEDLKVRSVQPEGFSQVLELETAEGV 296

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F    PL G+FQV NAL+AAGL IA G+     LE L  L   PGR E VGT   G  ++
Sbjct: 297 FSVALPLAGDFQVSNALIAAGLAIAAGVPLQTALEALTVLRGAPGRIEHVGTRENGALVF 356

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L  +R    GR+I VFGCGGDRD GKRP+MG+I+  LAD++IVTDDN
Sbjct: 357 VDYAHKPEALENVLAALRPFAPGRLISVFGCGGDRDAGKRPLMGEISARLADVSIVTDDN 416

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR+E+P+ IR EI+   P  +E G+R  AIR A++ML + DVL VAGKGHET  IV   E
Sbjct: 417 PRTENPDSIREEIVAACPAALEIGDRALAIRQAVKMLQEGDVLCVAGKGHETGQIVGT-E 475

Query: 480 KKMSVDCDIIREIL 493
                D + I++ L
Sbjct: 476 VLPFSDHEEIQKAL 489



 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 162/475 (34%), Gaps = 44/475 (9%)

Query: 7    IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            +  DF E ++          +  I  +S DSR IQ G  F AI G   DGH F   A+  
Sbjct: 788  LLSDFLEAVDG--DVHGDLAD-DITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVEA 844

Query: 67   GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            GA   VVS           +      + VD+  K L         +    I+AVTG+ GK
Sbjct: 845  GASVAVVSRE-----KLGELPEGGRYVAVDDVLKALERLGVAARARSKARIIAVTGSVGK 899

Query: 127  SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
            +     ++    +SG++   +   +               P+ LA+  +           
Sbjct: 900  TGTKEALRLCLSKSGITHAPVASFNNHWGV----------PLTLARMHAD---TEFGIFE 946

Query: 187  VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAI 245
            +  +  G     +  ++      T +   H++   + +    AK  +F  + P   +   
Sbjct: 947  IGMNHRGEITPLVKMVRPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILN 1006

Query: 246  IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                       +         V      G     KKV    +   +  ++ G++  +   
Sbjct: 1007 RDNRQYDLLRYLAAVAGVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIG 1066

Query: 306  LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--Y 362
             PG   V N+L      + +G + A     L ++    GR  + V   + G  + VD  Y
Sbjct: 1067 APGAHHVINSLGVLTGVMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESY 1126

Query: 363  AHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIV 415
                 S+   +  +  +    +GR I V G   +       +   +A +L     DI   
Sbjct: 1127 NANPASMRAAINLVAGLPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYC 1186

Query: 416  TDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +       K+  E +       + E  +++E  +  +  +   D+++V  KG
Sbjct: 1187 VGTH------MKVLWERLPAQTRGAYSETSDKLE--KDLLSEVRPNDIVMV--KG 1231


>gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
 gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
          Length = 496

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 158/504 (31%), Positives = 252/504 (50%), Gaps = 27/504 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    ++     +I +V++DSR ++AG +F+A+ G   DGH ++ +AI  G
Sbjct: 4   KHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS    +         +  ++ V++TR  + +     +        ++ VTGT+G
Sbjct: 64  AVAVLVSKPVDVSG-------DVCVITVEDTRAAMMVCVPYFFDYPANSMRMIGVTGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  ++ I +  G     IG    +    +     TTP  + L   L  +  +GVT+
Sbjct: 117 KTTTSHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 177 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVK 236

Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I  DDAY   V+++           G     ++   V       + T+S +G D
Sbjct: 237 SGKGAVINIDDAYGHRVVEKTTAPIITYSIDG--SGTLNAHDVDMTPKSSRYTVSYDGHD 294

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G C+  GI    + + L+    VPGRFE +    +   + 
Sbjct: 295 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 353

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DN
Sbjct: 354 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 413

Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE  
Sbjct: 414 PRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAQPGDIVLIAGKGHEDY 473

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+ + +     D +  R  L  I
Sbjct: 474 QILKD-KTIHFDDREEARAALKEI 496


>gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium novyi NT]
 gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium novyi NT]
          Length = 483

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 170/499 (34%), Positives = 271/499 (54%), Gaps = 26/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +L+     E++N          E +++ +  DSR I    +FVAI G   DGH FI
Sbjct: 1   MKVNELLKGLEYEILNG-------DLELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI +GA+ IV S           I+     + V+NTRK L++ AS LY    +   ++
Sbjct: 54  EKAINEGAKVIVCSKEIE-------IKKGITYIKVENTRKALAIMASNLYNNPSKDIKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G S+  IG   + I +       TTP  + L +    +
Sbjct: 107 GITGTNGKTTSTYMIKSILESAGHSTGLIGTISNFIGNEKIKAERTTPESLELHEMFKKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  +E SSH L   R+ G++   G FTNL +DH+D+H+T + Y+ AK+ +F+  
Sbjct: 167 KDKNIEYCVMEVSSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  II  DD Y + ++    ++  ++     +   +  K +       +  +  + 
Sbjct: 227 KNS----IINIDDTYGERILNDVPDSSNKITYSTEKKADLFAKDIVNHARGAEFVLCYKD 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           K+      +PG + VYNAL +AG C++ GI    V + LE + V PGR E    +   G 
Sbjct: 283 KETHINLSIPGIYNVYNALCSAGACLSEGISMEDVKKGLESVVV-PGRCENATKDYDLGF 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT + LE IL+  R  T GR+I VFGCGGDRD+ KRPIMGKI  D++DIAI+T
Sbjct: 342 DVIIDYAHTPDGLENILETARDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIIT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+E+P +I  +++ GI    +I   NR EAI+ AIE+  + DV+VVAGKGHE   I
Sbjct: 402 SDNPRTEEPSQIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKQGDVIVVAGKGHEDYQI 461

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + + +     + ++I +I+
Sbjct: 462 LKD-KTIHFDERELIADII 479


>gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
          Length = 482

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 206/480 (42%), Positives = 281/480 (58%), Gaps = 10/480 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+      P      +I  +++DSR ++ G++F A+ G K DG  FI QAI +GA A++V
Sbjct: 4   LMGSGPALPEGGA-TEILGLTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLV 62

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                     A + +N P++   N R+ L+L A+  +G  P  + AVTGT+GK+S+A+F+
Sbjct: 63  -------PLDAAVAANVPVIADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFL 115

Query: 134 QQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++I    G  +  +G     S+   +    TTP P+ L   L+ L+ +GVTH+++EASSH
Sbjct: 116 REIWAALGEEAASLGTLGVTSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSH 175

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q+RLDG+KL A  FTN+ RDH+DYH +   Y  AK+RLF E++     A++ AD A 
Sbjct: 176 GLAQYRLDGVKLRAAGFTNITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQ 235

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             E        G R++SVG +GK I L         Q + +  EGK++    PL G FQ 
Sbjct: 236 YAEFEAVCWARGHRIISVGRKGKGIFLAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQA 295

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NALVAAGL I  G  +  V   LEKL    GR E       G  +Y+DYAHT ++LE  
Sbjct: 296 SNALVAAGLAIGCGGAAEKVFAALEKLTGAKGRMEEAAHLPNGASVYIDYAHTPDALENA 355

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ IR  T+GR+ +VFGCGGDRD GKRP+MG  A  LADI  VTDDNPRSE  + IRA +
Sbjct: 356 LEAIRPHTAGRLSIVFGCGGDRDAGKRPLMGAAAAKLADIIYVTDDNPRSEAADAIRAAV 415

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + G PG IE G+R  AI TA+  L   DVLVVAGKGHET  IV + +     D + IRE 
Sbjct: 416 LKGCPGAIEIGDRAAAIETAMRALQPGDVLVVAGKGHETGQIVGD-KVLPFSDHEAIREA 474


>gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 484

 Score =  349 bits (896), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 218/495 (44%), Positives = 301/495 (60%), Gaps = 18/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L  +   +               +I  +S+DSR +  G++FVA+ GN+ DG  ++
Sbjct: 1   MLLGELFIECIKDDC---------LASIEITGISADSRQVLPGYVFVALKGNQSDGKKYV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA  I+  + +  ++ S       P++ V + R  L++ A+R Y   PE ++AV
Sbjct: 52  NDAIQRGARVIITDNNFVFENLS------IPVIHVLDVRHKLAIAAARFYNSQPETVVAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SV SFV+QI +  G  +  IG    +S    D   LTTP P+ L + L  +++
Sbjct: 106 TGTSGKTSVVSFVRQIWEYIGFCAASIGTVGVVSPKRHDIGSLTTPDPVMLQRLLCEIAN 165

Query: 180 QG-VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              VTH + EASSHGLDQ R+DG+ L A +FTNLGRDH+DYH++ + YF+AKMRLF  LL
Sbjct: 166 DEGVTHAAFEASSHGLDQCRIDGVHLAAAAFTNLGRDHMDYHKSIEHYFHAKMRLFHTLL 225

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P+++PA+I+ADD YS++V+     A  +VL++G  GKFI L +V     KQ V   +   
Sbjct: 226 PQDAPALIFADDVYSQKVIDTVRQAHRQVLTIGRTGKFITLNRVEHQRLKQCVECRMGNN 285

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + F  PL G+FQV NAL+AAGL IA      +V   LEKL   PGR E VG    G  +
Sbjct: 286 IYTFDLPLAGDFQVTNALMAAGLAIATNAPPDMVFRSLEKLQGAPGRLELVGNTEDGAPV 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAH   +LE +L ++R  T GR+I+VFGCGGDRDQGKR +MGKIA + ADI IVTDD
Sbjct: 346 YVDYAHKPEALEQVLLSVRPFTQGRLILVFGCGGDRDQGKRALMGKIAGNKADIMIVTDD 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPR+E PEKIR +I+  +P  IE  +R +AI  A+ +L   D L+VAGKGHE   I+   
Sbjct: 406 NPRTEAPEKIRKDILQAVPEAIEIADRGQAIEYAVGLLKAGDTLIVAGKGHENGQIIG-Q 464

Query: 479 EKKMSVDCDIIREIL 493
           E     D   +   L
Sbjct: 465 EIYPFSDRLKVIAAL 479


>gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium kluyveri DSM 555]
 gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016]
 gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555]
 gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 485

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 166/500 (33%), Positives = 247/500 (49%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++     ++I   +          I E+  DSR ++ G +FV I G   DGH +I
Sbjct: 1   MNLKDVLRGIDYKIIKGKN-------NLNIGEIQYDSRKVKTGDLFVCIAGYVTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
             A   GA AIV+S              +  ++ V +TRK L+L +S  Y        I+
Sbjct: 54  ESAFKNGAAAIVLSKKVDFI-------PDCTVIEVKDTRKALALMSSNYYDNPAEDMKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I + +G     +G  S    +    +  TTP  + L K    +
Sbjct: 107 GITGTNGKTTSTFMVKSILETAGYKVGVVGTISNYIGNKKIPSHRTTPESLELQKLFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +EASSH L   R+ G++     FTNL RDH+D+H+T + Y+ +K      +
Sbjct: 167 VDDGVDYCVMEASSHSLYLDRVYGVEFCQALFTNLTRDHLDFHKTFEEYYKSK------I 220

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  ++      +              G ++     +   +    +          IS EG
Sbjct: 221 ILFKNTVNSVINIDDKYGERVYEDAKGKKLTYAIDKNADLMADNLKIHSRGVNFNISYEG 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
                   +PG++ V NAL +AG+C+A GID   V + LE +  VPGR E V  +   G 
Sbjct: 281 NTKHINLNIPGKYNVMNALGSAGVCLAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGY 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE ILK  R  T G++I VFGCGGDRD  KRPIMG I    +D A+VT
Sbjct: 341 EVVVDYAHTPDGLENILKCAREFTKGKLISVFGCGGDRDSTKRPIMGNIGTKFSDFAVVT 400

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR E+P  I  +I+ GI    +I   NR EAI+ A+EM    DV+V+AGKGHE   I
Sbjct: 401 SDNPRGEEPMAIIKDILTGIKKNNYIVIENRKEAIKKAMEMAETGDVVVIAGKGHEDYQI 460

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + +       + +I+ EI+ 
Sbjct: 461 LKD-RTIHFDEREIVAEIIE 479


>gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
 gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
          Length = 507

 Score =  349 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 165/520 (31%), Positives = 253/520 (48%), Gaps = 38/520 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E  +             +  V+ DSR ++ G +FVAI G KEDG  FI
Sbjct: 1   MKLTDVLAGCGAEQTSGGRSA------VDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+++GA A+V               S  P   V + RK L+L A+  YG+  + +  L
Sbjct: 55  GEAVSRGAVAVVSEKPVP--------SSQVPFFKVSSARKALALIAANFYGRPADQLTLL 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ +   +  S+  IG      +    +   TTP P+ L + L  +
Sbjct: 107 GITGTNGKTTTSYLLEAMSTAAYASTGVIGTLGYKFAGRTVECANTTPDPLELHRILREM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V +E SSH L Q R+ G+   A  F+NL RDH+DYH+  + YF +K +LF E 
Sbjct: 167 VEAGVETVIMEVSSHALAQERVHGLTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAEN 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
           L     A++  DD Y+  +                QG   I    V       +  +   
Sbjct: 227 LSATGVAVVNGDDTYASRIYNEQRGQKRMAWKFSRQGSGEISAADVSFSLQGIKGVLKTP 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG- 355
             D      L G   + N L+A G+ +  G     V E +E++  V GR E V       
Sbjct: 287 AGDIPLKSKLLGPHNLENILLAVGIGLGAGFARRDVQEGIERMMPVAGRMERVENYGPSG 346

Query: 356 -GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++L+  ++  R++  GR+I VFGCGGDRD+GKRP+MG +A + AD+A+
Sbjct: 347 APAVLVDYAHTDDALKRSIEAARSLAKGRVIAVFGCGGDRDKGKRPLMGAVAGEGADLAV 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLN 457
           VT DNPR+EDPE+I +++  GI                   ++   +R  AI  AI + +
Sbjct: 407 VTSDNPRTEDPEEIISQVTAGIEKSGLRRISAGKAKSGEKGYLVDADRRAAIEQAISLAS 466

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
             DV+++AGKGHET   V   EK +  D  +  + L   +
Sbjct: 467 ADDVVLIAGKGHETYQQVGE-EKLVFDDRQVAAKALANRI 505


>gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 507

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 235/496 (47%), Gaps = 21/496 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DLI      +I+          + ++  ++ DSR ++ G++F A+ G K DGH FIP+
Sbjct: 4   LRDLIEGLDKPVISG-------GLDVEVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120
           A+A+GA AIV  +A            +   L V N R  L+  A+   G       +  V
Sbjct: 57  ALAEGAVAIVAETA-------PPEDCSVTWLHVKNARVALAEMAAAYKGHPARSMAVGGV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++ A  +  +   +      +G     +    +    TTP  + L   LS +  
Sbjct: 110 TGTNGKTTTAFLLHHLLNHAHRRCGLLGTVVYDVGGDLKPATHTTPESLELQGLLSEMRD 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G   V++E SSH +DQHR  G+   A  FTNL +DH+DYH T + YF AK +LF     
Sbjct: 170 RGCVAVAMEVSSHAIDQHRTHGVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTAA 229

Query: 240 KESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             S  ++   D    + ++         V                         +  +G+
Sbjct: 230 SRSGKLVINVDDIWGRRLVDAHKEHPGLVTYGLGVAADYRAVNPRYDLTGTSFELEHKGR 289

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P  G+F VYN+L A      +G +    ++ ++    +PGR E V  ++    +
Sbjct: 290 SLLVRIPQIGQFNVYNSLAALAAAHGMGCNLRDTVKAMQSSPQIPGRMERVTPDNHSFHV 349

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +VDYAHT + L   L   R +   RII VFGCGGDRD+ KRP+M +   + +DI+I+T D
Sbjct: 350 FVDYAHTPDGLVNALSTARALRPERIITVFGCGGDRDRLKRPLMARAVEEHSDISILTSD 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDP+ I  +   G          +R EAI TAI+   + D++V+AGKGHE    V 
Sbjct: 410 NPRTEDPQAIMDDARKGFTRSAHALIADRKEAIHTAIKGAREGDIVVIAGKGHEPYQDVQ 469

Query: 477 NGEKKMSVDCDIIREI 492
            G K    D  + R++
Sbjct: 470 -GVKHPFDDRRVARQL 484


>gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 482

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 166/499 (33%), Positives = 255/499 (51%), Gaps = 27/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ ++     E++           +  I E+  DSR +++G +FV I G   DGH +I
Sbjct: 1   MKLKKVMNGLTYEVVKGND-------DLNIGEIQYDSREVKSGDVFVCIKGYVTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA AIV+S              +  ++ V +TRK L++ +S  Y    + +  +
Sbjct: 54  DKAYKNGAAAIVISEEVENV-------PDCTVIKVKDTRKALAIISSNYYDNPSKKMKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G     +G   + I      +  TTP  + L K    +
Sbjct: 107 GITGTNGKTTSTFMMKSILETAGYKVGLVGTIANYIGEKKIPSHRTTPESLELQKLFKQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +  +E SSH L   R  G++     FTNL RDH+D+H+T + Y+ AK+ LF+  
Sbjct: 167 VDEGVQYCVMEVSSHSLYLDRAYGVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKNT 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +           D   ++ +      G ++     +   +    +          I+  G
Sbjct: 227 INSVINIDDKYGDKVYEDAL------GTKITYAINKEADLKANDLNIHSRGANFNITYRG 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           +       +PG++ V NAL + G C+  GI   +V + LE ++ VPGR E V      G 
Sbjct: 281 QTAHINLNIPGKYNVMNALGSIGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLGY 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE ILK  R  T+GR+I VFGCGGDRD  KRPIMGKI  +L+D A++T
Sbjct: 341 EVIVDYAHTPDGLENILKTAREFTTGRLIAVFGCGGDRDNTKRPIMGKIGTELSDFAVIT 400

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR E+P  I  EI++G+    +    NR EAI+ AI M  K DV+VVAGKGHE   I
Sbjct: 401 SDNPRGEEPRAIIDEIVNGVEKDDYKVVENRKEAIKEAIHMAQKGDVIVVAGKGHEDYQI 460

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + + +     + +II EIL
Sbjct: 461 LKD-KTIHFDEREIIAEIL 478


>gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
          Length = 501

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 177/485 (36%), Positives = 260/485 (53%), Gaps = 8/485 (1%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            + +  L +     R   I  ++ DSR ++ G +F A+ G +  G  FI  A+  GA AI
Sbjct: 6   RKSLTDLGLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAI 65

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +  +A +        +S+  ++V ++ R+ L+  A+  +G  PE ++ VTGT+GK+SVAS
Sbjct: 66  LTDAAGARIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVAS 125

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           F +QI    G  +  IG T    ++      TTP PI L + L+     GVTH ++EASS
Sbjct: 126 FCRQIWCELGYEAVNIGTTGVEGAYEAPLAHTTPEPITLHRVLAECEVAGVTHAAMEASS 185

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RLDG+ L+A  F+N  +DH+DYH T   YF AK  LF  +LP++  A+I  DD 
Sbjct: 186 HGLEQRRLDGVHLVAAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVINIDDP 245

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               + + A   G  +++VG   G  +H++        Q +    +G+       L G F
Sbjct: 246 KGPAMAEIARARGQDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLNLMGGF 305

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  N  +AAGL IA G D   V + L  +  V GR +   T   G  ++VDYAHT +++ 
Sbjct: 306 QGENVALAAGLVIAAGSDPDRVFDTLRHMKTVRGRMQLAATRRNGAAVFVDYAHTPDAVS 365

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +R    GR++ + G GGDRD  KRP+MG  A   AD+ IVTDDNPRSEDP  IRA
Sbjct: 366 TALSALRPHVMGRLVAIIGAGGDRDTAKRPLMGAAAAQNADLVIVTDDNPRSEDPAAIRA 425

Query: 431 EIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
            ++ G+          E G+R EAI   ++ML   D L++ GKGHET  IV + +     
Sbjct: 426 AVMAGVRDAGGADWATEVGDRAEAILRGVDMLGPGDALLICGKGHETGQIVGD-DVFPFD 484

Query: 485 DCDII 489
           DC+  
Sbjct: 485 DCEQA 489


>gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-63q42]
 gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile ATCC 43255]
          Length = 484

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 230/504 (45%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D+I            I         IN V  DSR +  G +F+ I G   DGH +I
Sbjct: 1   MKLNDIIQGLDI-------INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA A +V     ++            + V +TRK ++  A   Y    +    +
Sbjct: 54  KDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            VTGT+GK+S+ + + +I   +      IG               TTP  I L    + +
Sbjct: 106 GVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +LF + 
Sbjct: 166 LDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKT 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
                      DD   K++ +          + G         + + +  +     +   
Sbjct: 226 TMANII---NIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITP 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     P+PG F VYN L     C  +GI   +  E L   + V GRFE V  N +G 
Sbjct: 283 SYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKGI 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I    +D+ I+T
Sbjct: 342 SVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIIT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+E+PE I  +I+ GI      +    +R +AI  AI M  K DV+++ GKGHET 
Sbjct: 402 SDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHETY 461

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+    K    D ++  E L  +
Sbjct: 462 QIIG-KVKHHFDDKEVANECLSKM 484


>gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-23m63]
 gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
 gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
          Length = 484

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 230/504 (45%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D+I            I         IN V  DSR +  G +F+ I G   DGH +I
Sbjct: 1   MKLNDIIQGLDI-------INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA A +V     ++            + V +TRK ++  A   Y    +    +
Sbjct: 54  KDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            VTGT+GK+S+ + + +I   +      IG               TTP  I L    + +
Sbjct: 106 GVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +LF + 
Sbjct: 166 LDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKT 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
                      DD   K++ +          + G         + + +  +     +   
Sbjct: 226 TMANII---NIDDEGGKKIYENIKGINVPCYTYGVDTNADFMARDIKSDSDGVSYRLITP 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     P+PG F VYN L     C  +GI   +  E L   + V GRFE V  N +G 
Sbjct: 283 SYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKGI 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I    +D+ I+T
Sbjct: 342 SVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIIT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+E+PE I  +I+ GI      +    +R +AI  AI M  K DV+++ GKGHET 
Sbjct: 402 SDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAISEAISMAKKDDVVIITGKGHETY 461

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+    K    D ++  E L  +
Sbjct: 462 QIIG-KVKHHFDDKEVANECLSKM 484


>gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 486

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 165/503 (32%), Positives = 259/503 (51%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DLI          +    +   ++ I +++ +S++ + G +FV I G K DGH +I
Sbjct: 1   MKLLDLIENI------DVLETNVGDFDKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  +VV   +        I      +   NTRK L++ ++  +G   ++   +
Sbjct: 55  NEAIQNGACLVVVDEFFDTSKIEGKID----YIKTSNTRKALAVMSANFFGHPSKDFLLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I +  G     IG   + I S   + + TTP    L K    +
Sbjct: 111 GVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S+GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF   
Sbjct: 171 KSEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMS 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A             +        V         +  + +    NK Q  +   G
Sbjct: 231 KKRVVNA-------DDMWGKRIIEMYPDSVTYAKDSDAQVFARNIKLFVNKNQFELWYNG 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V  +++   
Sbjct: 284 EKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIV-ESNQKFT 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + L  ++K +  +T GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 343 VVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 402

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 403 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+ +       + ++++ IL  I
Sbjct: 463 ILKD-RTIPFDEREVVKNILKEI 484


>gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
 gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
          Length = 489

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 154/499 (30%), Positives = 237/499 (47%), Gaps = 24/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+ +          +      +  I  +S+DSR +Q G +F+ + G + DG  F 
Sbjct: 4   MRLHELLART--------GLDTRNLPDIDIAGLSTDSRQVQPGDLFIGLPGTRVDGSEFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILA 119
           PQAIA GA  +V+S      + +  + +  P++ V +     +  AS  Y        LA
Sbjct: 56  PQAIAGGAAGLVIS------ENARGVEAAVPVIRVPDVVGTCARLASAYYDFPARKLTLA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
               +   +  + + +   ++   +  +G   S     +Q+ R TTP  + + K L+ + 
Sbjct: 110 GVTGTNGKTTTTHLIENLLQAQAPTGLVGTLYSRWPGQSQEARHTTPFALEIQKLLAQMV 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  +  +E SSH L Q R+ G +  A  FTNL +DH+D+H   ++YF AK  LF    
Sbjct: 170 EAGCQYGVMEVSSHALAQQRVAGCRFEAAVFTNLTQDHLDFHPDMESYFQAKATLFSPE- 228

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A+I ADD +   +              G     I+ +         + T+     
Sbjct: 229 YRSGRAVINADDPWGVRLAAAYDQVWTYSFQPGAD---IYPEDAVFTPEGIRGTLVTPVG 285

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  PL G+F + N L A G  +A+GID   +   L     VPGR E V  +     +
Sbjct: 286 RAAFTSPLVGQFNLANLLAAVGATLALGIDLEAIAAGLSGFGGVPGRMERVSGSDDDIAV 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + L  +L+  R    GR+I VFGCGGDRD+ KRP MG+IA +L+D+ +VT D
Sbjct: 346 IVDYAHTPDGLRKLLEATRPFVRGRLICVFGCGGDRDRTKRPQMGRIAAELSDLPVVTSD 405

Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+E+PE I  +I+ GIP       + +R  AI  A+      D +V+AGKGHE   I+
Sbjct: 406 NPRTENPEAILDDILAGIPVGVSPTVEVDRRRAILQALLEAKAGDCVVIAGKGHEDYQIL 465

Query: 476 TNGEKKMSVDCDIIREILG 494
               K    D +  RE L 
Sbjct: 466 GT-TKIHFDDREQAREALS 483


>gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 498

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 157/509 (30%), Positives = 247/509 (48%), Gaps = 32/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+ L            +          +  +++DSR ++ G +FVA+ G+  DGH F 
Sbjct: 1   MRLRQLFQPFI-------NFQVTNAENPDVLNITTDSREVEPGSLFVAVRGHTVDGHRFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+ +GA A++V          A + ++ P +VV +TR + +L A RL+G       ++
Sbjct: 54  GQAVERGAVAVMVEEPV------ADVPASIPQVVVPDTRHWSALVADRLFGSPSRELRVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   V+ +   +G  +  IG       S +     TTP  + + + L   
Sbjct: 108 GVTGTNGKTTVTHIVRHLLDSTGRKAGLIGTVGAKLGSTSWSLPNTTPEAVEVHRLLRRF 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231
              G TH  +E SSH L + R  G+     +FTNL +DH+D+H T + Y  AK       
Sbjct: 168 VDAGATHAVMEVSSHALVERRAAGVSFACAAFTNLTQDHLDFHGTMERYAAAKALLFSRL 227

Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                +   +   A+I ADD +S  + + +            +   +  + V    +  +
Sbjct: 228 GNGTGDDPARSVYAVINADDPWSPVMAEASAAPILTYGI--ERAADVRARDVRLSASGAR 285

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +      F+   PL G F VYN L A  + +  G+ ++ + E +     VPGR E + 
Sbjct: 286 FWVDSPAGAFEIETPLIGRFNVYNTLAAVAIALVEGLAASEIQEGIRSYPSVPGRMERI- 344

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   ++VDYAHT + LE +L ++R     R++VV GCGGDRD+ KRP M ++A+ LA
Sbjct: 345 DEGQPFSVFVDYAHTPDGLENVLASVREFAPARVLVVVGCGGDRDRTKRPKMAEVAVRLA 404

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D AI T DNPRSEDP  I AE+  G+         E+ +R  AI  AI      DV+V+A
Sbjct: 405 DRAIFTSDNPRSEDPVAILAEMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIA 464

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKGHE   I+   EK+   D +  R  + 
Sbjct: 465 GKGHEDYQIIGA-EKRHFDDREEARRAIR 492


>gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 481

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 215/495 (43%), Positives = 291/495 (58%), Gaps = 16/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L D++              P      ++  +++ S  +  G IF A+ G+K DG  ++
Sbjct: 1   MRLSDVLPAGIE--------PPPGAGSVEVTGITAASAAVGKGAIFAALPGSKVDGASYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+ +GA AIV+     +     T+ +   ++ VDN R  L+  A++  G+ P   +AV
Sbjct: 53  PDALQRGASAIVIGKGKGV-----TVPAGVALIEVDNPRAALAKIAAKFAGRQPRCAVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA F +QI    G  +  +G    +         LTTP P+ L   L+ L+ 
Sbjct: 108 TGTSGKTSVADFTRQIFTSLGRKAASVGTIGIVKPDGAVYGSLTTPDPVTLHTTLASLAD 167

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH++ EASSHGLDQ+RLDG++L A +FTNLGRDH+DYH T++AY  AK+RLF ELL 
Sbjct: 168 EGVTHLAFEASSHGLDQNRLDGVELSAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQ 227

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              PA+I  D A S +V   A   G RV++VG  G  +    +     +Q++ I  +G+ 
Sbjct: 228 PGQPAVINTDGARSADVAAAAKARGLRVMTVGQSGDTLKRTSLTRDGFQQRIGILFDGRS 287

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           FD   PL G +QV NALVAAGL IA G  +  VL  LE L  VPGR E +G    GG   
Sbjct: 288 FDVRLPLVGAYQVENALVAAGLAIATGEKADAVLAALESLKGVPGRLEIIG-ERNGGLAV 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +L   L   R   +GR+I VFGCGGDRD+GKRPIMG+I+++ AD+ IVTDDN
Sbjct: 347 VDYAHKPEALAAALDACRPFVTGRLISVFGCGGDRDKGKRPIMGRISVEKADVTIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSED   IRAEI+ G  G  E GNR EAI TA+ M+   DV ++AGKGHET  IV +  
Sbjct: 407 PRSEDAASIRAEILAGAAGAREIGNRAEAIATAVSMMQPGDVALIAGKGHETGQIVGD-R 465

Query: 480 KKMSVDCDIIREILG 494
                D D +R+ L 
Sbjct: 466 ILPFSDHDEVRKALE 480


>gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
 gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
          Length = 494

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 185/480 (38%), Positives = 265/480 (55%), Gaps = 3/480 (0%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            + ++ L +      +  +  +S DSR ++ G +F A+ G +  G  F+  A+ +GA A+
Sbjct: 5   AKPLSALGLTARPGSDVAVTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +   A       A      P+LVV++ R  LS  A+  +G  P  ++AVTGT+GK+SVA+
Sbjct: 65  LTDRAGEDTARQALAGGTVPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVAT 124

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           F + I Q  GL +  IG T    +FA  +  TTP PI L + L+ +++ GVTH ++EASS
Sbjct: 125 FTRMIWQALGLDAANIGTTGVEGAFAAPSSHTTPEPITLHRLLAEMAAAGVTHAAMEASS 184

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL Q RLDG+ L A +FTN  +DH+DYH T   YF+AK  LF  +LP+E  A+I  DD 
Sbjct: 185 HGLAQRRLDGVMLKAAAFTNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDP 244

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +++RA   G +++ VG      I L+        Q V    +G       PL G F
Sbjct: 245 KGAVLVERARARGQKLIRVGQGDTCEIQLQGQRFDAAGQDVRFLWQGGPQMVRLPLIGGF 304

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           Q  N L AAGL IA G +   V E L +L  V GR +   T + G  ++VDYAHT +++E
Sbjct: 305 QAMNVLTAAGLVIACGAEPKAVFEVLPQLATVRGRMQLAATRTNGATVFVDYAHTPDAVE 364

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+ +R    GRII + G GGDRD+ KRP+MG  A   AD  IVTDDNPR+EDP  IRA
Sbjct: 365 TALRALRPHVLGRIIAIVGAGGDRDRTKRPLMGAAAAAHADAVIVTDDNPRTEDPALIRA 424

Query: 431 EIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            ++ G  P   E G+R EAI   ++ L   D L++ GKGHE   ++   +     D +  
Sbjct: 425 AVMAGAGPEATEVGDRAEAILRGVDALGPGDALLIMGKGHERGQVIGT-DVFPFDDAEQA 483


>gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile 630]
 gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile]
          Length = 484

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 231/504 (45%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D+I            I         IN V  DSR +  G +F+ I G   DGH +I
Sbjct: 1   MKLNDIIQGLDI-------INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA A +V    +++            + V +TRK ++  A   Y    +    +
Sbjct: 54  KDAIEKGASAFIVEEDVAIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            VTGT+GK+S+ + + +I   +      IG               TTP  I L    + +
Sbjct: 106 GVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +LF + 
Sbjct: 166 LDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKT 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
                      DD   K++ +          + G         + + +  +     +   
Sbjct: 226 TMANII---NIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITP 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     P+PG F VYN L     C  +GI   +  E L   + V GRFE V  N +G 
Sbjct: 283 SYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKGI 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I    +D+ I+T
Sbjct: 342 SVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIIT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+E+PE I  +I+ GI      +    +R +AI  AI M  K DV+++ GKGHET 
Sbjct: 402 SDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHETY 461

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+    K    D ++  E L  +
Sbjct: 462 QIIG-KVKHHFDDKEVANECLSKM 484


>gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 483

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 247/501 (49%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I+ V  DSR  +  ++F+AI G K DG  ++
Sbjct: 1   MKLIDILKGVKCEI--------KGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V                    ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVADREIKE-------YPGITTVLVEDARATMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G   + I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  +R+D  +     FTNL +DH+D+HQ  +       +   +L
Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNME----EYAKTKSKL 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     +M  +  A      V      +  K +    +  +  + +E 
Sbjct: 222 FKMAKRASVINIDDKYSSMMIESSKAKVLTYGVKDFAYVM-AKDIRNSLDGVKFKVQIED 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F VYNAL A  +   +GI    V E L ++ V  GRFE V T      
Sbjct: 281 KKEEMSLKIPGLFNVYNALAAITVADFLGISLRSVREALSQVTV-KGRFEPVETGK-DFY 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +++DYAHT + ++ I++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T 
Sbjct: 339 VFIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSEDP +I ++I  GI      ++   NR EAIR A+    K DV+++AGKGHET  
Sbjct: 399 DNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKGHETYQ 458

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ N +     + +I++EIL 
Sbjct: 459 IIGN-KVIPFDEREIVKEILS 478


>gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
 gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
          Length = 498

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 184/476 (38%), Positives = 270/476 (56%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +     RE +I  ++ DSR +  G +F A+ G++  G  FI  A+AQ A AI+  
Sbjct: 13  LSTLGLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTD 72

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         ++  +++ ++ R+ L+  A+  +G+HP  ++AVTGT+GK+SV++F +
Sbjct: 73  AEGARLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTR 132

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI    G  +  +G T    +++   R TTP PI L + L+  + QGVTHV++EASSHGL
Sbjct: 133 QIWYELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGL 192

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L AG FTN  +DH+DYH++ +AYF+AKM LF  +L  +  A++  DD    
Sbjct: 193 DQRRLDGMVLSAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGP 252

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V + A   G  V+ VG   +    L         Q++    +G+       L G FQ  
Sbjct: 253 LVAQIAEERGQEVIGVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQAE 312

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL I  G D A V   L  L  V GR +   T   G  ++VDYAHT +++   +
Sbjct: 313 NVLLAAGLAIGSGSDPAEVFAALGHLQTVRGRMQLAATRDNGATVFVDYAHTPDAVATAV 372

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R    GRI+ + G GGDRD+ KRP+MG+ A + AD  IVTDDNPRSEDP  IRAE++
Sbjct: 373 EALRPHVIGRIVAIVGAGGDRDRTKRPLMGQAAAEHADRVIVTDDNPRSEDPATIRAEVL 432

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G PG  E G+R EAI    +ML   D L++ GKGHET  IV +       D +  
Sbjct: 433 AGAPGATEVGDRAEAILRGADMLEPGDALLICGKGHETGQIVGDAV-LPFDDAEQA 487


>gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 487

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 187/476 (39%), Positives = 265/476 (55%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL +   + R   I  ++ DSR +QAG++F A+ G+K  G  FI  A+   A AI+  
Sbjct: 1   MQQLGLTAAEGRNPAITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAILTD 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  I+V D+ R  L+  ++  +G  P+ + AVTGT+GK+SV++FV+
Sbjct: 61  AVGAEIAADELANSDAAIIVTDDPRSALAFASALYFGAQPQIMTAVTGTNGKTSVSTFVR 120

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI     L +  +G T    S       TTP PI L + L+ L  +G++H ++EASSHGL
Sbjct: 121 QIWNLLDLEAVNLGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHGL 180

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH T +AYF+AKM LF  +L  +  A++  DD    
Sbjct: 181 DQRRLDGVNLAAAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKGA 240

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV   A   G  ++ VG   +    L         Q +      + F     L G FQ  
Sbjct: 241 EVAMIAQAHGHELIGVGRDPEADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIGGFQAE 300

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AAGL IA G D A V + L  L  V GR +   T + G  ++VDYAHT +++E  L
Sbjct: 301 NVLLAAGLVIACGEDPARVFDTLGDLETVHGRMQLAATRTNGAAVFVDYAHTPDAVETAL 360

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR++ + G GGDRD+GKRP+MG+ A + AD+  VTDDNPRSEDP  IRA ++
Sbjct: 361 KAMRPHVMGRLVALIGAGGDRDRGKRPLMGQAATENADLVFVTDDNPRSEDPALIRAAVM 420

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P  IE  +R EAI  A++ L   D L++AGKGHET   V +       DC+  
Sbjct: 421 GGAPEAIEVADRAEAILRAVDALGPGDALLIAGKGHETGQTVGD-TVFPFDDCEQA 475


>gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 485

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 154/492 (31%), Positives = 242/492 (49%), Gaps = 20/492 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            +   ++  ++    + +  +I  +  DSR ++ G +F  I G   DGH F  QA+ +GA
Sbjct: 2   NELLRVLRGITPLKKEHQSIEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A+V     +L         + P+++V +T++ ++  AS  YG+  + +  + VTGT+GK
Sbjct: 62  VAVVAERPLAL---------DVPVVIVRDTKRAMARLASHFYGEPTKRLQLIGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV   +  + + +G  +  IG     I     + R TTP  + L +  + + ++ V   
Sbjct: 113 TSVTHILDTMFREAGQKTGLIGTLYTKIGDETIETRNTTPESLVLQQRFASMVNKQVETA 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESP 243
            +E SSH L   R+ G       FTNL  DHIDYH+T + Y  AK  +            
Sbjct: 173 VMEVSSHALHLGRVRGCDYDIAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKT 232

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I +DD  S  +++                   + + +       + T+ V G+  D  
Sbjct: 233 AVINSDDPASDRLIQMTTADVVTYGIKKQADV--YGENIKVSAAGTRFTLHVFGEKTDVQ 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F VYNAL AA      G+  + +   LEK+  V GRFE V    +   + VDYA
Sbjct: 291 LKLIGLFNVYNALAAAASAYVSGLSLSTIKASLEKVTGVAGRFEPV-DEGQDFTVIVDYA 349

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +SLE +L+ ++      I VV GCGGDRD  KRP+MG+IA+  AD  I T DNPR+E
Sbjct: 350 HTPDSLENVLQTVQDFADNDIHVVVGCGGDRDATKRPVMGRIAVQYADRTIFTSDNPRTE 409

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           DP+ I A+I  G+    +    +R  AI  AI   N  D++V+AGKGHET   +   ++ 
Sbjct: 410 DPDAILADITEGLDPDQYTVIVDRKTAIEQAIAAANTGDIVVIAGKGHETYQEIGR-QRI 468

Query: 482 MSVDCDIIREIL 493
              D ++ R+ L
Sbjct: 469 HFDDREVARDAL 480


>gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter sp. X514]
 gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X514]
 gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 483

 Score =  348 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 154/501 (30%), Positives = 247/501 (49%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I+ V  DSR  +  ++F+AI G K DG  ++
Sbjct: 1   MKLIDILKGVKCEI--------KGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V                    ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVADREIKE-------YPGITTVLVEDARATMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G   + I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  +R+D  +     FTNL +DH+D+HQ  +       +   +L
Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNME----EYAKTKSKL 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     +M  +  A      +      +  K +    +  +  + +E 
Sbjct: 222 FKMAKRASVINIDDKYSSMMIESSKAKVLTYGIEDFAYVM-AKDIRNSLDGVKFKVQIED 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F VYNAL A  +   +GI    V E L ++ V  GRFE V T      
Sbjct: 281 KKEEMSLKIPGLFNVYNALAAITVADFLGISLRSVREALSQVTV-KGRFEPVETGK-DFY 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +++DYAHT + ++ I++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T 
Sbjct: 339 VFIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSEDP +I ++I  GI      ++   NR EAIR A+    K DV+++AGKGHET  
Sbjct: 399 DNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKGHETYQ 458

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ N +     + +I++EIL 
Sbjct: 459 IIGN-KVIPFDEREIVKEILS 478


>gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 486

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 164/505 (32%), Positives = 261/505 (51%), Gaps = 30/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL+DLI          + +      +  + I +++ +S++ + G +FV I G K DGH 
Sbjct: 1   MKLKDLIEN--------IDVLETNVGDFGKDITDIAYNSKNAKEGCVFVCIKGFKTDGHE 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           +I +AI  GA  +VV   +        I      +   NTRK L++ ++  +G   ++  
Sbjct: 53  YINEAIQNGACLVVVDEFFDTSKIEGKID----YIKTSNTRKALAVMSANFFGHPSKDFL 108

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175
            + VTGT+GK+S    ++ I +  G     IG   + I S   + + TTP    L K   
Sbjct: 109 LIGVTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSIEIEAQHTTPESYDLQKLFW 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            + ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF 
Sbjct: 169 QMKNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFG 228

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   A             +        V         +  + +    NK Q  +  
Sbjct: 229 MSKKRVVNA-------DDMWGKRIIEMYPDSVTYAKDSDAQVFARNIKLFVNKNQFELWY 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V  +++ 
Sbjct: 282 NGEKEEITLNIPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIV-ESNQK 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAHT + L  ++K +  +T GR +++FGCGGDRD+ KRPIMG+IA  +AD  IV
Sbjct: 341 FTVVIDYAHTPDGLLNLMKTVNEVTDGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIV 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET
Sbjct: 401 TSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ + +     + ++++ IL  I
Sbjct: 461 YQILKD-KTIPFDEREVVKNILKEI 484


>gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
 gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
          Length = 483

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 162/497 (32%), Positives = 255/497 (51%), Gaps = 24/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++     + I+          + ++N++  DSR +  G +FVAI G   DGH FI
Sbjct: 1   MKLIQILKGLEYKKISGT-------LDLEVNKIEYDSRKVLKGDVFVAIEGFNVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA+ I+ S              N+  + V+NTRK L++ AS  YG       ++
Sbjct: 54  NKAIENGAKVIICSKNTEF-------YENSTYIKVENTRKALAIMASNFYGNPSNEIKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G ++  IG   + I         TTP  + L +    +
Sbjct: 107 GITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANFIGEKKIKAERTTPESLELQEMFKKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + + + +  +E SSH L   R+ G+K   G FTNL +DH+D+H+T + Y+ AK+     +
Sbjct: 167 NDKNIEYCIMEVSSHSLSLDRVYGLKFSQGIFTNLTQDHLDFHKTFENYYKAKLS----M 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 +II  DD Y   ++K       ++     +   +  + +       +  +  + 
Sbjct: 223 FHNAKNSIINIDDFYGDRMLKDIPKTSTKITYSTERQADLFAENIVNHSRGAEFDLIYKE 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   +PG + VYNAL +A  C+  GI    V E LE + V           + G  
Sbjct: 283 TMIHINLSIPGIYNVYNALCSAAACLEEGISIEKVKEGLENVVVPGRCENVTKKYNLGFD 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL   +  T GR+I VFGCGGDRD+ KRPIMGKI  +L+DIAI+T 
Sbjct: 343 VIVDYAHTPDGLENILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSNLSDIAIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPR+E+P  I  +++ GI    +I   NR EAI+ A++M  K DV+VVAGKGHE   I+
Sbjct: 403 DNPRTEEPMSIIDDVVSGIDKDNYIVVENRKEAIKQAMKMAKKDDVIVVAGKGHEDYQIL 462

Query: 476 TNGEKKMSVDCDIIREI 492
            + +     + ++I +I
Sbjct: 463 KD-KVIHFDEREVIADI 478


>gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-66c26]
 gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CIP 107932]
 gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-76w55]
 gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-97b34]
 gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-37x79]
 gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CD196]
 gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile R20291]
 gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-32g58]
 gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile CD196]
 gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile R20291]
          Length = 484

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 230/504 (45%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D+I            I         IN V  +SR +  G +F+ I G   DGH +I
Sbjct: 1   MKLNDIIQGLDI-------INVKGELNIDINNVQYNSRKVTKGTLFICIKGFVSDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA A +V     ++            + V +TRK ++  A   Y    +    +
Sbjct: 54  KDAIEKGASAFLVEEDVEIK--------GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            VTGT+GK+S+ + + +I   +      IG               TTP  I L    + +
Sbjct: 106 GVTGTNGKTSITTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  + ++E SSH L  +R+D      G FTNL  DH+D+H+  + Y  AK +LF + 
Sbjct: 166 LDNGCDYCAMEVSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFFKT 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
                      DD   K++ +          + G         + + +  +     +   
Sbjct: 226 TMANII---NIDDEGGKKIYENIKGINVPCYTYGVDTKADFMARDIKSDSDGVSYRLITP 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     P+PG F VYN L     C  +GI   +  E L   + V GRFE V  N +G 
Sbjct: 283 SYEEVIFIPVPGMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVP-NDKGI 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE +LK  +    G+II VFGCGGDRD  KRP+MG I    +D+ I+T
Sbjct: 342 SVIVDYAHTPDALENVLKTTQQFAEGKIISVFGCGGDRDTEKRPLMGAIGQKYSDLCIIT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+E+PE I  +I+ GI      +    +R +AI  AI M  K DV+++ GKGHET 
Sbjct: 402 SDNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITGKGHETY 461

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+    K    D ++  E L  +
Sbjct: 462 QIIG-KVKHHFDDKEVANECLSKM 484


>gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
 gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
          Length = 483

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 174/499 (34%), Positives = 271/499 (54%), Gaps = 26/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +L+     E++N          E  IN +  DSR I    +FVAI G K DGH FI
Sbjct: 1   MKVNELLKGLNYEILNGT-------LELDINAIQYDSRKISESDVFVAIEGFKVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI++GA+ IV S    + +           + V NTRK L++ AS LY    +   ++
Sbjct: 54  EKAISEGAKVIVCSKEVEIHE-------EITYIKVQNTRKALAIMASNLYNNPSKDIKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G S+  IG   + I +    +  TTP  + L +    +
Sbjct: 107 GITGTNGKTTSTYMIKSILELAGHSTGLIGTISNFIGNEKIKSERTTPESLELHEMFKKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  +E SSH L   R+ G++   G FTNL +DH+D+H+T + Y+ AK+ +F+  
Sbjct: 167 KDKNIEYCVMEVSSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  II  DD Y + V+    ++  ++     +   +  K +       +  +  + 
Sbjct: 227 KNS----IINIDDTYGERVLNDVPDSSNKITYSTEKKADLFAKDIVNYARGAEFILCYKS 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           ++      +PG + VYNAL +AG C++ GI    V + LE + V PGR E        G 
Sbjct: 283 EETHINLSIPGIYNVYNALCSAGACLSEGISMEDVKKGLESVVV-PGRCENATKEYDLGF 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT + LE IL+  R  T GR+I VFGCGGDRD+ KRPIMGKI  D++DIAIVT
Sbjct: 342 DVIIDYAHTPDGLENILETARDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDMSDIAIVT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+E+P +I  +++ GI    +I   NR EAI+ AIE+  K DV+VVAGKGHE   I
Sbjct: 402 SDNPRTEEPSEIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKKGDVIVVAGKGHEDYQI 461

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + + +     + ++I +I+
Sbjct: 462 LKD-KTIHFDEREVIADII 479


>gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 492

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 164/492 (33%), Positives = 255/492 (51%), Gaps = 23/492 (4%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL++ + +  +    + ++  ++ DSR +Q G++FVAI G K DGH FI  A   GA 
Sbjct: 8   LKELLSAIDVIAISGPQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNAREAGAT 67

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A        + +    + ++  ++ V ++R+ L+L A + YG     +  + VTGT+GK+
Sbjct: 68  A-------VVVEREVEVPADLTVIKVSDSRQALALLADKFYGHPSRKMTVVGVTGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +  I ++ GL    +G     I   A     TTP  + L K ++ +  + V  V+
Sbjct: 121 TTTHLIAAIWRQVGLKPGVVGTIHNLIGEKALPVTNTTPESLDLHKLMAEMVREDVQGVA 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L  +R+ G+K     FTN+ +DH+D+H   + Y  AK +LFE+ +     A+I
Sbjct: 181 MEVSSHALALNRVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKLFEKDIK---YAVI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD  ++++ K +   G            +  K +         T++    +      L
Sbjct: 238 NADDQAAEQLFKISR--GKVYTYGIENNADVRAKDIQVTARGVSFTVNSPWGEQRLELKL 295

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F VYN+L A  + + +G +   V   LE +  V GRFE V        + VDYAHT 
Sbjct: 296 TGRFNVYNSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELVDQGQ-DFAVVVDYAHTP 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           + LE IL   R IT GR+I VFGCGGDRD+ KRPIMG+IA   +D+ +VT DNPR+EDP+
Sbjct: 355 DGLENILTTARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDLPVVTSDNPRTEDPQ 414

Query: 427 KIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           KI  +I+ G+ G     ++   +R EAI  AI +    DV+V+AGKGHE   I+    K 
Sbjct: 415 KIIEDILVGLQGKDPGSYLVIADRREAINRAINLAEPGDVVVIAGKGHEDYQIIGT-TKY 473

Query: 482 MSVDCDIIREIL 493
              D ++  E L
Sbjct: 474 HFDDREVAAEAL 485


>gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
 gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
          Length = 485

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 167/500 (33%), Positives = 264/500 (52%), Gaps = 24/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++ K    ++N          E  I  +  DSR+I+   IF AI G   DGH FI
Sbjct: 1   MKLKEVLKKLEYNILNG-------NIEIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA+ IV    +  ++    +  +   + V N+RK L++ AS  YG   + +  +
Sbjct: 54  ESAIEKGAKVIVFDKGFENEN----MYKDITFIKVKNSRKALAVAASNYYGNPKDKLKLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I + +G     +G   + I       + TTP  + + K    +
Sbjct: 110 GVTGTNGKTTSTFMIKSILEEAGFKVGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L   R+ GI+   G FTNL +DH+D+H+T + Y+N+K+ LF+  
Sbjct: 170 VDSGVDYCVMEVSSHSLYLDRVYGIEFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNS 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      +I  DD Y + ++K             Y       + V       + T+  +G
Sbjct: 230 INS----VINIDDNYGERILKEIEEKTFTYSIKKYSDL--KAESVRLHSRGGEFTVDFKG 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
                   +PGE+ V NAL +   C+  GI   ++   LEKL  VPGR E V      G 
Sbjct: 284 NKEKINIHIPGEYNVSNALGSILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGY 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + L+ +L+  R  T G++I V+GCGGDRD+ KRPIMG+I  +L+D+AI+T
Sbjct: 344 DVIVDYAHTPDGLDNVLRTARDFTKGKLISVYGCGGDRDRAKRPIMGRIGTELSDLAILT 403

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+E+P  I  +I+ G+    +I   +R EAI+ A+ +  K DV+VVAGKGHE   I
Sbjct: 404 SDNPRTEEPFSIIDDIVKGVTKDNYIIVQSRREAIKKAMTIAKKDDVIVVAGKGHEDYQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + + +     + ++I+EI+ 
Sbjct: 464 LKD-KTIHFDEREVIKEIIE 482


>gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 488

 Score =  346 bits (887), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 245/501 (48%), Gaps = 29/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L D++       +           +  +  +  DSR+ + G +FVAI G K DG  +I
Sbjct: 1   MRLVDILKDVNYTTVKG-------NIDVDVKGICYDSRNSKEGSLFVAIKGFKFDGADYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+ +GA AIVV    S       I  +  ++ V+N RK L+  AS  YG   +   ++
Sbjct: 54  NDAVERGAVAIVVEREVS-------IDKDITVIKVENARKSLAKIASNYYGDPSKQLFMI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +        IG    +          TTP  + L + L  +
Sbjct: 107 GVTGTNGKTSVTYMIKSILESQNNKVGLIGTIHNMIGDKVYPTERTTPESLDLQRYLRLM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +V +E SSH L  +R+D  K     FTNL +DH+D+H+T   Y NAK +LF   
Sbjct: 167 VDEGVKYVVMEVSSHSLALNRVDECKFDIAVFTNLTQDHLDFHKTMDEYANAKAKLFRM- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D      M    NA      +      +  K +       + T+ +E 
Sbjct: 226 ---AKTACVINIDDDYSSYMIENSNAKVVTYGIKDYAYIM-AKDIKNDIKGAKFTVQIED 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    +PG F VYN+L A  +   +GI    V   L+ + +  GRFE +        
Sbjct: 282 IKSEIALKIPGLFSVYNSLAAISVAFILGIPLQSVKMALKDVKI-KGRFEVL-DLDVPYN 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + LE ++K      +G+ I++FGCGGDRD+GKRP MG++A   AD  I+T 
Sbjct: 340 VVIDYAHTPDGLENLMKAFGEYNTGKKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITS 399

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSE+P KI  EI  GI      +    +R EAI+ A+ +    DV+++AGKGHET  
Sbjct: 400 DNPRSEEPIKIIQEIEEGIKNTKCPYTIIEDRKEAIKYALSIAKDNDVVILAGKGHETYQ 459

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           ++ +       + DI+R+IL 
Sbjct: 460 VLKDKVID-FDERDIVRDILN 479


>gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 493

 Score =  346 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 180/463 (38%), Positives = 264/463 (57%), Gaps = 2/463 (0%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  ++ DSR ++ G++F  + G++  G  FI  A+  GA AI+  +  +         
Sbjct: 20  RPVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDG 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +   ++V ++ R+  S  A+  YG  P  ++ VTGT+GK+SVASF +Q+ Q  G ++  I
Sbjct: 80  AEVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAANI 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G T     F+ D   TTP P+ L  AL+ +++QG+TH ++EASSHGLDQ RLDG++L+A 
Sbjct: 140 GTTGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDGVRLVAA 199

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN  +DH+DYH+T +AYF AK  LF  +L  +  A+I  DD    ++M  AH AG  +
Sbjct: 200 GFTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGAEL 259

Query: 268 LSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L+VG     +  L       + Q++  + +G        L G FQ  N LVA GL +A G
Sbjct: 260 LTVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMATG 319

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                ++  L +L  V GR + V     G  ++VDYAHT ++L+  L+ +R    GR++V
Sbjct: 320 AQVGDLVPLLPRLATVRGRMQKVARRENGATVFVDYAHTPDALKTALRALRPHVLGRLVV 379

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           VFG GGDRD GKRP+MG  A   AD+  VTDDNPRSEDP  IRA++  G P   +  +R 
Sbjct: 380 VFGAGGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAGCPEATDVPDRA 439

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           EAI   ++ L   DVL++AGKGHET   V +       D +  
Sbjct: 440 EAILRGVDALEPGDVLLIAGKGHETGQTVGD-VVYPFDDAEQA 481


>gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 500

 Score =  346 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 165/499 (33%), Positives = 266/499 (53%), Gaps = 26/499 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+DLI          +    +   ++ I +++ +S++ + G  FV I G K DGH +I 
Sbjct: 16  KLKDLIENI------DVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYID 69

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AI  GA  +VV   +        I      +   NTRK L++ ++  +    ++   + 
Sbjct: 70  EAIQNGARLVVVDEFFDTSKIEGKID----YIKTSNTRKALAVMSANFFAHPSKDFLLIG 125

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S    ++ I + +G     IG   + I S   + + TTP    L K    + 
Sbjct: 126 VTGTNGKTSTTFMIKSILEANGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMK 185

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S+GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF+AK++LF    
Sbjct: 186 SEGVDSVVMEVSSHSLELFRVYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGMSK 245

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A    DD++ K +++   +    +         +  + +    NK Q  +    K
Sbjct: 246 KRVVNA----DDSWGKRIIEMYPDC---ITYAKDSDANVCAQNIKLFVNKNQFDLYYNNK 298

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + L  +PG F +YN+L AA  CI +GI+   + + LE+L  VPGRFE V  +++   +
Sbjct: 299 KENILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIV-ESNQKFTV 357

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT D
Sbjct: 358 VIDYAHTPDGLLNLMKTVNEVADGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTSD 417

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  I
Sbjct: 418 NPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQI 477

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       + ++++ IL
Sbjct: 478 LKD-RTIPFDEREVVKNIL 495


>gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
 gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
          Length = 508

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 167/502 (33%), Positives = 253/502 (50%), Gaps = 15/502 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+ K    + +     P    E+ +  ++++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLKELLAK----VADLSEFKPHPAFEKDVKGLATNSHACQTGDLFIGMPGTRVDGGDFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT--PILVVDNTRKFLSLFASRLYGKHPE--N 116
           P AIA GA A +VS   + +    +  S     ++   N     +  A+  YG   +   
Sbjct: 57  PSAIANGAVAALVSQQAAEKTPQTSTESPELPCVIPSVNMTTACAQVAAAFYGYPAQQLK 116

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALS 175
           ++ VTGT+GK++    ++ + + S   +   G   T    +Q     TTP  + L + L+
Sbjct: 117 LVGVTGTNGKTTTTHLIEYLLECSDKPTVLFGTLYTRWLGSQITAAYTTPFAVELQQKLA 176

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G  +  +E SSH L Q R+         FTNL +DH+DYHQT + YF AK  LF 
Sbjct: 177 EAVKAGCQYGVMEVSSHALHQGRVLECPFDVAVFTNLTQDHLDYHQTMEDYFEAKALLFS 236

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +  AII ADD+Y K +++R         S+      +   ++    N  +  +  
Sbjct: 237 P-QYLQGRAIINADDSYGKRLIERLEADRVWSYSINDSTADLWAAQLSYEPNGVKGVLHT 295

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SR 354
              +  F  PL G++ + N L A G  +++G+D A ++  L +   VPGR E V  +  +
Sbjct: 296 PQGEAAFELPLVGQYNLSNLLAAIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQISSQQ 355

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA DLAD+ +
Sbjct: 356 DVSVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKRPKMGKIAADLADVVV 415

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDP +I  +I+ GI      I   +R  AI+ AI      D +++AGKGHE 
Sbjct: 416 VTSDNPRTEDPNRILEDILAGIDLEIKPIVMCDRAHAIQRAIAEAKPGDGVLIAGKGHED 475

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   EK    D +  RE L
Sbjct: 476 YQILGT-EKVHFDDREQAREAL 496


>gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
 gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
          Length = 509

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 165/520 (31%), Positives = 250/520 (48%), Gaps = 41/520 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+       IN L I      E  ++ V  +SR      +FVAI G K DGH +I
Sbjct: 1   MNLSILLKG-----INILGISGPSGSEVNVSSVCYNSRQCTPDSLFVAIRGLKSDGHEYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA+ IV            T+     ++ V+N R+ L L A   Y      ++AV
Sbjct: 56  DDAVRCGAKVIVCEKEV-------TMPPEITVVRVENGRRTLGLLARNFYADPSRCLVAV 108

Query: 121 T--GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
              GT+GK++V   ++ I Q +G S   +G  +        +   TTP  + L + +  +
Sbjct: 109 AVMGTNGKTTVTYILESIFQAAGFSCGVLGTVNYRYPGLVMEAPNTTPESLDLQRIIREM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GVTH+  E SSH +D  R+D      G FTNL +DH+DYH+T + YF AK R F E+
Sbjct: 169 VDHGVTHLVAEVSSHAVDLRRIDDCDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEV 228

Query: 238 L-----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L            + ADD + K +++        +     +   I         +  +  
Sbjct: 229 LPGGRKQHRYAMAVNADDPWGKRLIRETGEISRPLTFGIEEKADIRASSFDLSLDGIRAE 288

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I V    FD    L G+F +YN L A    +A+ +    +   +  ++ VPGR E V  +
Sbjct: 289 IVVGSMSFDVDTALIGKFNLYNVLAAVSASVALRVPIEAIRRGVRAMNAVPGRLEKVSGS 348

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           ++   ++VDYAHT ++L  +L+++     GRII VFGCGGDRD+GKRP+MGK+A + +D+
Sbjct: 349 TQPD-VFVDYAHTDDALRRVLQSLSPFKRGRIITVFGCGGDRDRGKRPLMGKVATNYSDL 407

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453
            I+T DNPRSEDP  I  +I  GI                    G++   +R EAI  AI
Sbjct: 408 TILTSDNPRSEDPLSIIRDIEVGINSQSIPEGSSEDLSRGMTGRGYVVIPDRREAIGAAI 467

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 D++++AGKGHE   I+   ++    D  + +E L
Sbjct: 468 RSARPSDIVLIAGKGHEDYQIIGE-KRLFFDDRAVAKEFL 506


>gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
 gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
          Length = 487

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 209/504 (41%), Positives = 285/504 (56%), Gaps = 33/504 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L D++ +D                +  +  V++DSR +  G +F A+ G   DG  FIP
Sbjct: 5   RLSDILRRDL-------------DVDPVVTGVTADSRKVGPGTLFCALPGTARDGREFIP 51

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA++QGA A++            T+ + + IL   + R+  +L A   YG  P+  +A+T
Sbjct: 52  QALSQGAAAVLA--------PEDTLATASNILTTYDVRRAYALAAKAFYGAQPKTCVAIT 103

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGP------TSTISSFAQDNRLTTPSPIYLAKALS 175
           GT+GK+SVA+F +Q+    G  S  +G                   LTTP    +A+ L+
Sbjct: 104 GTNGKTSVATFCRQMFAHMGYHSASVGTLGIVTQNGAAEHAITPPGLTTPDAADIAEHLA 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L+  GVTH+++EASSHG+DQ RLDG+ L A  FTNL +DH+DYH T +AY  AK+RLFE
Sbjct: 164 SLARDGVTHLALEASSHGIDQRRLDGVTLTAAGFTNLTQDHLDYHATMEAYRAAKLRLFE 223

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +LLP+   A++ AD          A  AG  +LSVG +G+ + L       + Q + +  
Sbjct: 224 QLLPRGRVAVLNADSDAYNAFAASAITAGASLLSVGERGQHLTLTHRDLTVDGQILYLEH 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G+ F+    L G FQ  NALVAAGLC+A G  +  VLE L  L    GR E VG+   G
Sbjct: 284 QGRKFEVKLKLAGLFQASNALVAAGLCLAAGQKAEPVLEALTHLTGARGRLERVGSTGNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             IYVDYAHT + LE +LK +R  T GR++ VFGCGGDRD+GKRP MG IA  LAD  IV
Sbjct: 344 AEIYVDYAHTPDGLETVLKALRPHTQGRLVCVFGCGGDRDRGKRPQMGAIAERLADRVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           TDDNPRSE+P  IRAEI+ G+        +E G+R +AI  A+  L   DVLVVAGKGHE
Sbjct: 404 TDDNPRSEEPASIRAEIMAGLAGTQSSNVLEIGDRRQAIFEAVASLKTGDVLVVAGKGHE 463

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
              IV  G+     D  ++ E L 
Sbjct: 464 QGQIVA-GKVLPFDDAGVVLEALN 486


>gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
 gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
          Length = 498

 Score =  345 bits (885), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 180/477 (37%), Positives = 261/477 (54%), Gaps = 3/477 (0%)

Query: 15  INQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++  + P    + +  I  +  DSR I++G +FVA+ G+K  G  F+  A+   A A++
Sbjct: 11  LSEFGLVPSNEIYTDPIITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVL 70

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                         + + PI+V ++ R  LS   +R +G  P  ++AVTGT+GK+SVA+F
Sbjct: 71  TDEDGFNFAKKIFTKIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANF 130

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI +  G  +  IG      + + +   TTP P  L K L  + + GVTH S+EASSH
Sbjct: 131 TRQIWECLGKKAVNIGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEASSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RLDG+ L A +FTN   DH+DYH+T  AYFN+K+ LFE +L  E   +I  DD  
Sbjct: 191 GLDQKRLDGVYLTAAAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMDDPK 250

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              + + A   G  +++VG     + LK        QQ+  S   +       L G FQ 
Sbjct: 251 GLYIYEVAKLRGQDIITVGKNNCDLTLKNCTFDATGQQILFSWRDEIKSVRLDLIGYFQA 310

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L AA L IA G     V + L +L  V GR +     S G  ++VDYAHT +++E  
Sbjct: 311 MNILQAAALVIACGEQPNDVFDTLSELRTVSGRMQLAAKRSNGASVFVDYAHTPDAVETA 370

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK +R    GR++++ G GGDRD+ KR ++G+ A   AD+  VTDDNPRSEDP+ IR  I
Sbjct: 371 LKAMRPHVMGRLLIIVGAGGDRDKSKRELIGEAAQKYADVVFVTDDNPRSEDPDSIRKSI 430

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G P  IE G+R  AI T ++ L   D L++AGKGHET  I+ N +     D +  
Sbjct: 431 LLGCPDAIEIGDRARAILTGVDALKPGDALLIAGKGHETGQIIGN-DIFDFNDLEQA 486


>gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 489

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 161/502 (32%), Positives = 249/502 (49%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +LI     EL +          +R+I+ ++ DSR ++ G +F+ I G K DGHLF 
Sbjct: 1   MKLVELIKNLTIELQDG-------PLDREISGIAYDSRRVKPGDLFICISGLKSDGHLFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAI  GA A++                   +L   +TR  L+L A+  YG+  +   ++
Sbjct: 54  GQAIENGAVAVLAERQLD-------TGGKATLLTTPDTRSALALLAANYYGRPSKSIRVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++    ++ I + +G  +  +G   + +    ++ + TTP  + +   ++  
Sbjct: 107 AVTGTNGKTTTTDLIKAILEEAGKKTAIMGTLYAQVGEIQREMQHTTPEALEIESFMALC 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   ++ +E SSH L   R+  I      FTNL +DH+D+HQ    Y  AK++LF+ +
Sbjct: 167 REEKADYIVMEVSSHALQLQRVAEIDFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMI 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             ++    I   D    E + +A    CR   +  +  +    ++    +     +    
Sbjct: 227 KEEKQNYAIINIDDPWAEEIFQAATIPCRSYGIKKRSDY-QAGELKIDLDGSSFRLHYGD 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G F +YNAL A    +  GID  L+   L ++  VPGRFE V        
Sbjct: 286 NSLMINMKLIGLFSIYNALAAISFALQEGIDPGLIQSALARVEGVPGRFEKVDCGQ-DFA 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL+  R +   R+I VFGCGGDRD+ KRP+MG+IA   +D  +VT 
Sbjct: 345 VIVDYAHTPDGLENILQTSRELGKKRLICVFGCGGDRDRSKRPLMGEIAAKYSDFCVVTS 404

Query: 418 DNPRSEDPEKIRAEIIHGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSEDP  I AEII G+            +R EAIR AI +    D++V+AGKGHE  
Sbjct: 405 DNPRSEDPHAIIAEIIPGMDKVEKSRYAIIVDRREAIRHAIHLARTGDLVVIAGKGHENY 464

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            +V +   +   D  +  E+L 
Sbjct: 465 QLVKDQVLE-FDDRKVAAELLR 485


>gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
 gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
          Length = 503

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 183/482 (37%), Positives = 266/482 (55%), Gaps = 8/482 (1%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L +     R+  I  +S DSR ++ G +F A+ G K  G   I  A+  GA AI+  
Sbjct: 12  LAALGLRAKGGRDATITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILTD 71

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           +  +         S+  +++ ++ R  L+L AS  +G HPE ++AVTGT+GK+SV++F +
Sbjct: 72  AQGAQIAAKELADSSAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFAR 131

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI     L++  +G T    ++    + TTP PI L + L+   S G+THV++EASSHGL
Sbjct: 132 QIWIEMELAAVNLGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHGL 191

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG+ L A  FTN  +DH+DYH+T +AYF+AKM LF  LLP++  A+I  DD+   
Sbjct: 192 DQRRLDGVVLAAAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKGP 251

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           EV++ A + G   ++VG        L         Q++    +         L G FQ  
Sbjct: 252 EVVQIAESRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQAD 311

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+AA L IA G D     + L  L  V GR +   T   GG ++VDYAHT +++   L
Sbjct: 312 NVLLAAALVIAAGGDPEEAFDTLPYLTTVRGRMQHAATRRNGGSVFVDYAHTPDAVATAL 371

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R    G++I + G GGDRD GKRP+MG+ A+  AD+  VTDDNPRSEDP  IRA ++
Sbjct: 372 MAMRPHVMGKLIAIVGAGGDRDTGKRPLMGQAAVQNADMVFVTDDNPRSEDPRVIRAAVM 431

Query: 434 HGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G          IE G+R EAI   I+ L   D L++AGKGHE+  I+ + +     D +
Sbjct: 432 AGALENAAGKSVIEVGDRAEAILRGIDALGPGDALLIAGKGHESGQIIGD-DVLPFDDVE 490

Query: 488 II 489
             
Sbjct: 491 QA 492


>gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 483

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 246/501 (49%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I  V  DSR  +  ++F+AI G K DG L++
Sbjct: 1   MKLIDILKGVNCEI--------KGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA AIVV                   ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAIAIVVDREIKE-------YPGVTTVLVEDARAAMAKIASNFYNNPTTKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G   + I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L   R++  +     FTNL +DH+D+H   +       +   +L
Sbjct: 166 VNKGVKYVVMEVSSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDME----EYAKTKSKL 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     +M  +  A      +      +  K +    +  +  + +E 
Sbjct: 222 FKMAKRASVINIDDKYSSMMIESSKARVLTYGIKDFAYVM-AKDIRNSLDGVKFKVQIED 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F VYNAL A  +   +GI    V E L ++ V  GRFE V T      
Sbjct: 281 KKEEMSLKIPGLFSVYNALAAITVADFLGISLRSVREALSQVTV-KGRFEPVETGK-DFY 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +++DYAHT + ++ +++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T 
Sbjct: 339 VFIDYAHTPDGIQNMMEALKEYKAGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSE+P +I ++I  GI      ++   NR EAIR A+    K DV+++AGKGHET  
Sbjct: 399 DNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKGHETYQ 458

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ N +     + +I++EIL 
Sbjct: 459 IIGN-KVIPFDEREIVKEILS 478


>gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
 gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
          Length = 490

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 188/476 (39%), Positives = 267/476 (56%), Gaps = 2/476 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L + P    +  +++++ DSR +QAG +F A+ G +  G  FI  A+  GA AI+  
Sbjct: 5   LSDLGLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTD 64

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A +    +    ++  ++VV++    L+  A+  +G  PE ++AVTGT+GK+SVASF +
Sbjct: 65  RAGAEIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTR 124

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI +  G+ +  IG T    +F      TTP P+ L + L+ + + GVTH ++EASSHGL
Sbjct: 125 QIWEALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ R+DG++L A +FTNL +DH+DYH T +AYF AK+RLF  LLP    A++  DD +  
Sbjct: 185 DQKRMDGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHGL 244

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            V +     G  V+ V    +    +         Q V    +G        L G FQ  
Sbjct: 245 RVAEACSTRGIEVIGVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGAFQAM 304

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L AAGL IA G D   V   L K+  V GR +     S G  IYVDY+HT +SLE+ L
Sbjct: 305 NVLTAAGLVIAGGEDPEDVFAVLHKMEGVRGRMQLAARRSHGAPIYVDYSHTPDSLEVAL 364

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R    GR++VVFG GGDRD  KRP+MG  A   +D+A VTDDNPR+EDP  IRA ++
Sbjct: 365 KALRPHVLGRLVVVFGAGGDRDTAKRPLMGNAATLWSDVAFVTDDNPRTEDPAAIRAAVL 424

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G P      +R EAI  A++ML   D L++AGKGHET   V +       D +  
Sbjct: 425 AGCPEATVVADRAEAILRAVDMLEPGDALLIAGKGHETGQQVGD-VIYPFDDVEQA 479


>gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis]
          Length = 483

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 222/471 (47%), Positives = 290/471 (61%), Gaps = 8/471 (1%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                KI  +S++SR I  G++FVA+ GNK DG  +I  AI +GA  +V    +  ++ S
Sbjct: 15  NLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAENLS 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P+L V + R  L+L A+R Y   PE +LAVTGTSGK+SV SF++QI Q  G  
Sbjct: 75  ------VPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFC 128

Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG    +S    D   LTTP P+ L + L  L+ +GVTH ++EASSHGL+Q RLDGI
Sbjct: 129 AASIGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRLDGI 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            L A +FTNLGRDH+DYH   + Y  AKMRLF+ LLP ++PA+I ADD YS+EV+     
Sbjct: 189 NLAAAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQ 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           AG R L++G +G+FI + ++    +KQ V   +E   + F  PL G FQV NAL+AAGL 
Sbjct: 249 AGRRALTIGRKGQFIKINRIEHRRSKQYVECRIENDVYTFDLPLVGHFQVTNALMAAGLA 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I  G  S  V   L+KL   PGR E V        +YVDYAH   +LE +L   R  T G
Sbjct: 309 ITTGSSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAARPFTPG 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           R+IVVFGCGGDRDQ KRP+MGK+ LD ADI IVTDDNPR+E+PEKIR +I+   PG +E 
Sbjct: 369 RLIVVFGCGGDRDQRKRPLMGKLQLDKADIVIVTDDNPRTEEPEKIRQDILQAAPGALEI 428

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R EAI  A+ +L   D L++AGKGHE   +V   E +   D       L
Sbjct: 429 ADRSEAIYYAVGLLEAGDTLIIAGKGHENGQVVG-QETRPFSDRLEAISAL 478


>gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
 gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
          Length = 483

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 168/497 (33%), Positives = 258/497 (51%), Gaps = 24/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++ +     +N          +  +N+V  DSR I +G +FVAI G   DGH FI
Sbjct: 1   MKLIQILKELDYTNLNGT-------LDLDVNKVEYDSRKILSGDVFVAIEGFNVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI  GA+ IV S           I  +   + V+NTRK L++ AS  YG     I  +
Sbjct: 54  PKAIENGAKVIVCSKDTE-------INESCTYIKVENTRKALAIIASNFYGNPSNKIKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G ++  IG   + I         TTP  + L +    +
Sbjct: 107 GITGTNGKTTSTYMIKSILEHAGCNTGLIGTIANFIGEEKIKAERTTPESLELHEMFKKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  +E SSH L   R+ G++   G FTNL +DH+D+H+T + Y+ AK+ +F   
Sbjct: 167 KDKNIEYCIMEVSSHSLSLDRVYGLEFSQGVFTNLTQDHLDFHKTFENYYEAKLSMFNNA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  II  DD+Y + ++K   N   +V     +   +    +       +  +  +G
Sbjct: 227 KNS----IINIDDSYGERMLKDIPNTNLKVTYSTERQADLVANNIVNHARGAEFDLIYKG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   +PG + VYNAL +AG C+   I    V E LE + V           + G  
Sbjct: 283 TTIHINLSIPGIYNVYNALCSAGACLEEEISIEKVKEGLENVVVPGRCENVTKKYNLGFD 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL   +  T GR+I VFGCGGDRD+ KRPIMGKI  DL+DIAI+T 
Sbjct: 343 VIVDYAHTPDGLENILNTAKDFTKGRLISVFGCGGDRDKTKRPIMGKIGSDLSDIAIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPR+E+P  I  +++ GI    ++   NR +AI+ A+++  K DV+VVAGKGHE   I+
Sbjct: 403 DNPRTEEPMSIIDDVVSGIDKDNYVVVENRKDAIKEAMKIAKKDDVIVVAGKGHEDYQIL 462

Query: 476 TNGEKKMSVDCDIIREI 492
            + +     + ++I +I
Sbjct: 463 KD-KVIHFDEREVIADI 478


>gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
 gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
          Length = 480

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 212/486 (43%), Positives = 291/486 (59%), Gaps = 20/486 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L   D        + F  Q  E  +  ++ DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MNLRELFSGD--------ATFDPQTSELAVAGLAVDSRAVKPGDVFFALGGSKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A+V   A+S+         + P++V  N R+ L+L A+  Y + P+ I AV
Sbjct: 53  GAAIEAGAVAVVADHAHSV---------SVPVIVTSNPRRALALAAAAFYPRQPQTIAAV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +Q+    G  +  +G    +S        LTTP P+ L +AL  L+ 
Sbjct: 104 TGTSGKTSVAAFTRQLWDSLGYDAASLGTIGIVSRHRNVYGSLTTPDPVALHRALDELAG 163

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASSHGLDQHRLDG+++ A +FTNL RDH+DYH T + Y  AK+RLF +L P
Sbjct: 164 DGVTHLALEASSHGLDQHRLDGVRIAAAAFTNLSRDHMDYHPTVEHYLAAKLRLFTDLAP 223

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + +PA+I AD  +S  V+  A      V+++G +G+ I L         Q++TI   G+ 
Sbjct: 224 EGAPAVIAADHEHSAAVIAAARARKLDVITIGRKGEGIRLVDATIDGFGQKMTIQHRGQT 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL GEFQ+ NALVAAGL IA G D+      LE+L    GR E +G + RG  ++
Sbjct: 284 HRLRLPLVGEFQIENALVAAGLVIATGGDATKTFSALEQLEGAKGRLELIG-DCRGAPVF 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L   L+ +R    GR++VVFG GGDRD GKRP+MG IA+  AD  IVTDDN
Sbjct: 343 VDYAHKPDALMKALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGAIAMRYADAVIVTDDN 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P  IRAEI+    G  E G+R EAIR+A+  L   DVL++AGKGHET  IV + +
Sbjct: 403 PRSERPATIRAEILAAAKGAKEIGDRAEAIRSAVASLQPGDVLLIAGKGHETGQIVGD-K 461

Query: 480 KKMSVD 485
                D
Sbjct: 462 VLPFSD 467


>gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
 gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
          Length = 483

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 187/494 (37%), Positives = 277/494 (56%), Gaps = 20/494 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+  +            ++  E+ +  ++ DSR ++ G++F A+ G K  G  FI
Sbjct: 1   MTLNDLLLDE---------GLVVEGGEQTVRGLTLDSRKVEPGFVFAALPGVKVHGRDFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+A+  GA  I+                  P++ V      L+  A+R Y + P +I+A+
Sbjct: 52  PKALTAGASVILTDEPVEAP---------VPVIAVPEPAALLARMAARFYPRQPGHIVAI 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSS 179
           TGT+GKSS   F++QI   +G+ +  +G        + +    TTP  + L  AL  L+ 
Sbjct: 103 TGTNGKSSTVEFLRQIWAGAGIEAACLGTLGVTRGNSVEVTGYTTPDAVALQAALDRLAG 162

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+ +EASSHGL QHR+DG++L  G+FTNL +DH+DYH     YF +K++LF E LP
Sbjct: 163 EGVTHLGMEASSHGLKQHRMDGVRLQVGAFTNLTQDHLDYHPDFADYFASKLKLFTERLP 222

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+I  D  +  ++   A   G  VL++G++G  + ++++      Q V  + +G++
Sbjct: 223 ADGRAVINVDSEWGGKMAASARERGLEVLTMGWRGSDLAIREITPRAASQSVIFAWKGRE 282

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL GEFQ+ NAL AA + ++ G+  A VL+ L+ L  VPGR E VG  + G  + 
Sbjct: 283 HALDIPLVGEFQILNALGAAAIALSDGVAEASVLDTLKGLAGVPGRLEKVGETAAGAPVL 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L+ +L+  R  T GR+IV+FGCGGDRD  KR  MG IA + AD  IVTDDN
Sbjct: 343 VDYAHTPDGLDKLLRAARPHTRGRVIVIFGCGGDRDASKRAKMGVIAANQADHVIVTDDN 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSEDP  IR  ++ G P   E  +R +AIR  + ML   D L++AGKGHET   V +  
Sbjct: 403 PRSEDPAAIRKAVLKGCPRAEEIADRAQAIRHGVAMLKAGDCLLIAGKGHETGQTVGD-I 461

Query: 480 KKMSVDCDIIREIL 493
                D +  R  L
Sbjct: 462 VHPFDDREQGRAAL 475


>gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
 gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
          Length = 495

 Score =  344 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 164/499 (32%), Positives = 264/499 (52%), Gaps = 26/499 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+DLI          +    +   ++ I +++ +S++ + G  FV I G K DGH +I 
Sbjct: 11  KLKDLIENI------DVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYID 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AI  GA  IVV   +        I      +   NTRK L++ ++  +    ++   + 
Sbjct: 65  EAIQNGARLIVVDEFFDTSKIKGKID----YIKTSNTRKALAVMSANFFAHPSKDFLLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S    ++ I +  G     IG   + I S   + + TTP    L K    + 
Sbjct: 121 VTGTNGKTSTTFMIKSILEAHGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMR 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF+AK++LF    
Sbjct: 181 NEGVDSVVMEVSSHSLELFRVYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGMSK 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A    DD++ K +++   +    +         +  + +    NK Q  +    K
Sbjct: 241 KRVINA----DDSWGKRIIEMYPDC---MTYAKDSNATVCARNIKLYVNKNQFDLWYNDK 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             + L  +PG F +YN+L AA  CI +GI+   + + LE+L  VPGRFE V  ++    +
Sbjct: 294 KEEILLNIPGLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIV-ESNEKFTV 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAHT + L  +++ +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT D
Sbjct: 353 VIDYAHTPDGLLNLMRTVNEVADGRKVLLFGCGGDRDRAKRPIMGEIAGRMADFVIVTSD 412

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  I
Sbjct: 413 NPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQI 472

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       + ++++ IL
Sbjct: 473 LKD-RTIPFDEREVVKNIL 490


>gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
 gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
          Length = 486

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 239/501 (47%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++     E+++ +        + ++  V  DSR ++ G +F+ I G   DGH +I
Sbjct: 1   MKLNHILEG--IEVLSVVGN-----EDVEVLNVEYDSRKVEEGTLFICIKGFVSDGHRYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A  +GA   ++      ++       +   + V++TRK ++  A+       +    +
Sbjct: 54  DSAYEKGARVFLIQDDVDFKE-------DCTYVKVEDTRKTMAKVAANFCEHPADKFDVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+ +F+ +I +        IG            +  TTP  + L K    +
Sbjct: 107 GVTGTNGKTSITTFINEILRNCNKKVGLIGTIKIFDGDNEVPSNSTTPESVDLQKIFKRM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G    ++E SSH L+  R+D      G FTNL  DH+D+H+T + Y  AK +LF + 
Sbjct: 167 VDNGCDCCAMEVSSHSLELSRVDDTNFKIGIFTNLTPDHLDFHKTLENYRKAKEKLFHKT 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
                      DD   +++ +          + G         K + +  +    T+   
Sbjct: 227 TQANII---NVDDEGGRKIYEAIKGLDTPCYTYGIEHDADFTAKNIKSDASGVAYTLVTP 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               D   P+PG+F VYN L     C  +GID    L  L     V GRFE V  N +G 
Sbjct: 284 NHTEDIFIPVPGKFTVYNTLAVIAACEMLGIDKEDYLNSLRNTGGVAGRFETVP-NDKGI 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE +L   R    G +I VFGCGGDRD  KRP+MG I   L+D  I+T
Sbjct: 343 SVIVDYAHTPDALENVLNTAREFVEGDLIAVFGCGGDRDSEKRPLMGGIGQRLSDRCIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +DNPR+EDPE I  +I+ G+      +    +R EAI+ AIE   K DV+++AGKGHE  
Sbjct: 403 NDNPRTEDPELIIKDILAGLDESNENYKVVMDRKEAIKEAIESAKKGDVILIAGKGHENY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+    K    D ++ RE+L
Sbjct: 463 QILGT-VKHHFDDKEVAREVL 482


>gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 509

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 147/506 (29%), Positives = 242/506 (47%), Gaps = 21/506 (4%)

Query: 8   YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            +    L+  + +         +I  +S+DSR I+ G +F+ + G K DG  F  +AI +
Sbjct: 2   SRYLHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIER 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A ++S   SL +       +  +++ +    F+   A+  +GK      ++ +TGT+
Sbjct: 62  GACAAIISKKASLLNPPT--NEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTN 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  ++ +    G  S   G   +   +  + ++ TT   + L   L      GV 
Sbjct: 120 GKTTTSFLIEFLTTSLGHPSALFGTLINRWPNHEETSKYTTTFAVPLQAKLRKAVQAGVE 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + ++E SSH L Q+R+ G       FTNL RDH+DYH + ++YF AK  LF   L ++  
Sbjct: 180 YGAMEVSSHALSQNRVAGCDFNGAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIEDGG 239

Query: 244 AIIYADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                +           E+ K+      +  S   +   +++  +  + +  +  +    
Sbjct: 240 PRSVINIDDKWGAKLAKELNKKCWTCSLKENSQTREKADLYISNLQIMQDGYKGKLHTPF 299

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--- 354
              +F+ PL GEF + N L A G+ +  G+    +L  L K   VPGR + +  +     
Sbjct: 300 GVENFISPLIGEFNLMNMLQAVGILVQRGLPLNDLLAALNKFPGVPGRMQLINMDGFKVK 359

Query: 355 --GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT + L+  L   R++T  R+I VFGCGGDRD+GKR  MG++A   AD 
Sbjct: 360 EGYPLVIVDYAHTPDGLQNALIASRSLTKRRLICVFGCGGDRDKGKRSKMGEVAAKFADY 419

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +VT DNPR EDP +I  +I  GI        +  R  AI+ AI    K DV+++AGKGH
Sbjct: 420 IVVTSDNPRQEDPIEIIKDIGKGITIDSEISVEPERSIAIQLAIAKAKKNDVVLIAGKGH 479

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E   I+ +       D +  R+ L L
Sbjct: 480 EDYQILKDQT-IYFDDREQARKALSL 504


>gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
 gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
          Length = 506

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 168/519 (32%), Positives = 249/519 (47%), Gaps = 46/519 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L     P       +      + +I  +  DSR ++AG +F A+ G   DG+ F+
Sbjct: 1   MLLSELTKSVMP-------LEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  GA A+VV                 P + V + R  +S  A+  YG     +  +
Sbjct: 54  DTAIKAGAVAVVVD--------GTLTPQGIPWVRVADARLAMSRMAAAFYGFPTATLPLV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++   ++ I ++SG+ +  +G  +            TTP  + L + L  L
Sbjct: 106 GITGTNGKTTITYLIESILEKSGIPAAVLGTVNYRFREKAIPAPNTTPESVDLQRTLREL 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
              G   V +E SSH L Q R+DG     G FTNL RDH+DYH   ++YF +KMRLF   
Sbjct: 166 IDMGAKGVVMEVSSHALQQRRVDGCCFDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSEL 225

Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              + +  +  A++  DD Y   +++ A          G     +  ++V          
Sbjct: 226 LAADRIKPKRCAVVNIDDPYGPRIVQGAACPVLSYGISG--NAHVRAERVVFSVAGISCV 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +    L G F +YN L A    IA+ +    + E LE    VPGR E V  N
Sbjct: 284 LVTPQGQINLHSELLGRFNLYNILAATAAGIAMELPLDAIHEGLEHHPQVPGRVERVA-N 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            RG  I VDYAHT ++LE +L+ +  +  GRII VFGCGGDRD+GKRP+MG+IA   +D+
Sbjct: 343 DRGLTILVDYAHTGDALENVLRTLTELKKGRIITVFGCGGDRDRGKRPVMGEIAGRYSDL 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453
           +I+T DNPRSEDPEKI A +  GI                    G+    +R EAIR A+
Sbjct: 403 SIITSDNPRSEDPEKIIAGVREGIVPLGIREYGSEELRHGFSEKGYAAVESRREAIRLAV 462

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 D++++AGKGHE   I+ + EK    D +   + 
Sbjct: 463 AAARPGDIVLLAGKGHEDYQIIGS-EKHHFDDREEAAQA 500


>gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 501

 Score =  343 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 168/501 (33%), Positives = 255/501 (50%), Gaps = 23/501 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       +           + KI+ +  DSR I  G  ++A+ G + DGH FI
Sbjct: 1   MKLLTLLKDLPSHTLTGS-------PQVKISHLECDSRRILPGSCYIALKGTRADGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+AI +GA A+V     + +   A        + V+++R  +SL  +   G+   ++  +
Sbjct: 54  PEAIRRGACAVVAEMPCTQEAREA----GVSWVEVNDSRLAVSLMGAAWNGRPSRHMTMI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A     + ++S L +  IG  +         +  TTP P+ L   L  +
Sbjct: 110 GVTGTNGKTTTAYIAHSLLKQSWLRAGLIGTIAYDNGEEITPSTHTTPGPLELEHLLKEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   VS+E SSH LDQ R+ GI    G FTNL +DH+DYH T + YF AK +LFE++
Sbjct: 170 YENGCRGVSMEVSSHALDQERVAGINFNVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQM 229

Query: 238 LP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  ++  A+I  DDAY + + +               G    +    A     +  
Sbjct: 230 AQDTKSRRKPVAVINIDDAYGRRLAEMFSGRMTVKTYGSALGADFRMLVHHATAKGSEYE 289

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +GK +    PL G+F +YN+L A    I  GI     + +L+ +  VPGR E     
Sbjct: 290 LEYKGKSYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPGRLELFTHP 349

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G +I++DYAHT ++LE + K ++ + S R+I VFGCGGDRD+GKRP+MG  A  L+D 
Sbjct: 350 G-GAQIFIDYAHTPDALENVCKTLKELCSRRLITVFGCGGDRDRGKRPLMGAAAARLSDA 408

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            IVT DNPRSE+P  I ++I  G+P   +    +R  AI TAIE     D++++AGKGHE
Sbjct: 409 CIVTSDNPRSEEPLSIISQIAAGMPEGRYAIIPDRARAIATAIEQARLGDIVLIAGKGHE 468

Query: 471 TVHIVTNGEKKMSVDCDIIRE 491
               ++ G      D   +R 
Sbjct: 469 NYQELSTGRID-FSDAKEVRR 488


>gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
 gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
          Length = 477

 Score =  343 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 162/470 (34%), Positives = 232/470 (49%), Gaps = 12/470 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + ++SDSR + AG +FVA  G+  DG  +IPQAIA GA A++  +      FS       
Sbjct: 15  SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEAEG----FSWPTDLQA 70

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L V + RK     A   YG       ++ VTGT+GK+S   ++          +  IG
Sbjct: 71  VNLPVKDLRKQAGEIADEFYGHPSRALWMVGVTGTNGKTSCTQWLTHCLNSLQRKTAVIG 130

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                          TTP PI L   L+    QG    ++E SSHGLDQ R++G+     
Sbjct: 131 TLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGRVNGVHFDVA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  A  +      P    A++ A+DAY    ++   + G  V
Sbjct: 191 VFTNLTRDHLDYHGDMDSY--AAAKRRLMEWPGLKLAVLNAEDAYGLTFLQALRSEGRPV 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G Q   +H   +       Q++++    D      + G F  YN L      +A+ +
Sbjct: 249 LSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVTLQASVMGRFNAYNLLAVLATLLAMDV 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                 + +  L  VPGR E  G N+    + +DYAHT ++LE  L+ +R  T G++  V
Sbjct: 309 PLEAAAQAIATLKPVPGRMEQYGGNAMPV-VVIDYAHTPDALENALQALREQTRGKLWCV 367

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446
           FGCGGDRD GKRP+MG IA  LAD  +VT DNPRSE+P+ I A+I   +        +R 
Sbjct: 368 FGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGRNHQIMVDRR 427

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            AI  AIE     D+++VAGKGHET   +  G +    D D++  +LG +
Sbjct: 428 AAIAHAIEQAAPGDIVLVAGKGHETYQEIK-GVRHPYSDVDVVTTLLGAV 476


>gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. NATL1A]
          Length = 509

 Score =  343 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 148/506 (29%), Positives = 242/506 (47%), Gaps = 21/506 (4%)

Query: 8   YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            +    L+  + +         +I  +S+DSR I+ G +F+ + G K DG  F  +AI +
Sbjct: 2   SRYLHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIER 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A ++S   SL +       +  +++ +    F+   A+  +GK      ++ +TGT+
Sbjct: 62  GACAAIISKKASLLNPPT--NEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTN 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  ++ +    G  S   G   +   ++ + ++ TT   + L   L      GV 
Sbjct: 120 GKTTTSFLIEFLTTSLGHPSALFGTLINRWPNYEETSKYTTTFAVPLQAKLRKAVQAGVE 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + ++E SSH L Q+R+ G       FTNL RDH+DYH + ++YF AK  LF   L  +  
Sbjct: 180 YGAMEVSSHALSQNRVAGCDFNGAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDDDG 239

Query: 244 AIIYADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                +           E+ K+      +  S   +   +++  +  + +     +    
Sbjct: 240 PRSVINIDDKWGSILAKELNKKCWTCSLKENSQIREKPDLYISNLQIMQDGYMGKLHTPF 299

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F+ PL GEF + N L A G+ +  G+    +LE L K   VPGR + +  +    +
Sbjct: 300 GVGNFISPLIGEFNLMNMLQAIGILVQRGLPLNDLLEALNKFPGVPGRMQLINMDGFKVK 359

Query: 358 I-----YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                  VDYAHT + L+  L   R++T  R+I VFGCGGDRD+GKR  MG++A   AD 
Sbjct: 360 DGYPLVIVDYAHTPDGLQNALIASRSLTKKRLICVFGCGGDRDKGKRSKMGEVAAKFADY 419

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +VT DNPR EDP +I  +I  GI        +  R  AI+ AI    K DV+++AGKGH
Sbjct: 420 IVVTSDNPRQEDPIEIIKDIQKGITIDSEISVEPERSIAIQFAIAKAKKNDVVLIAGKGH 479

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E   I+ +       D +  R+ L L
Sbjct: 480 EDYQILKDQT-IYFDDREQARKALSL 504


>gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
 gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus subtilis subsp. natto BEST195]
 gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
          Length = 494

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 231/480 (48%), Gaps = 23/480 (4%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             ++ +I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +    
Sbjct: 18  DSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREVDV---- 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                N P+++V  + + LS+ +   YG+  + +  + +TGT+GK+S    V +I +++G
Sbjct: 74  -----NVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAG 128

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  IG     I       + TTP  + L K    ++ + V    +E SSH L   R+ 
Sbjct: 129 KRTGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEVSSHALSLGRVH 188

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKE 255
           G       FTNL +DH+DYH+T   Y +AK  LF              A++ ADD  S  
Sbjct: 189 GCDYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAY 248

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K                     K +          +            L G+F VYN 
Sbjct: 249 FEKVTAAHISTYGIKNDADVM--AKNISITAQGTSFDLVTNKGTKHITMSLVGQFNVYNV 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A   CIA GI   ++ E +E+LH V GRFE V    +   + VDYAHT +SLE +L+ 
Sbjct: 307 LAAVATCIAAGIPFEIITEAVEELHGVRGRFELV-NQQQEFPVIVDYAHTPDSLENVLET 365

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R +T G++ VV GCGGDRD+ KRP M KIA++LAD  I T DNPRSEDP  I  ++  G
Sbjct: 366 CRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDMEAG 425

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +    +    NR +AI  AI    K DV+++AGKGHET   + N E     D ++    +
Sbjct: 426 VENAYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGN-ETFDFDDAEVAARAI 484


>gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
 gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
          Length = 506

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 238/504 (47%), Gaps = 17/504 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+ K    + N + I   +  +  +  + ++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLRELLAK----IANIVEIPSPEGLDVTVTGICTNSHACQPGDLFIGMPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENIL 118
             AIA GA A ++S   + +     +       ++  D+     +  A+  Y    + + 
Sbjct: 57  ESAIASGAVAAIISPQAAAKHPPQELSPETGVCVIAADDMTTVSAQTAAAFYDYPAQKLR 116

Query: 119 AVTGTSGKSSVAS----FVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKA 173
            +  T       +            S + +  +G   +    F Q    TTP  + L + 
Sbjct: 117 LIGVTGTNGKTTTTHLIEFLLAHSSSPIPTALLGTLYARWPGFEQTASYTTPFAVQLQQQ 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L      G     +E SSH L Q R+ G       FTNL +DH+DYHQ    YF+AK +L
Sbjct: 177 LQLAVKAGAQMAVMEVSSHALAQGRIQGCPFEVAVFTNLTQDHLDYHQNMDDYFSAKAKL 236

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F      +  AII ADD+Y + ++++         S+         K +       +  +
Sbjct: 237 FSSD-YLKGRAIINADDSYGERLIQQLPTEQVWSYSIQNPSADFWTKDLSYEPTGVRGIM 295

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTN 352
                +  F  PL G++ + N L A G  + +G+D  LV   L +   VPGR E      
Sbjct: 296 HTPVGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQIQP 355

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +L+  R    G++I VFGCGGDRD+ KRP MGKIA  LAD+
Sbjct: 356 EQDISVIVDYAHTPDSLENLLRASRPFIEGKMICVFGCGGDRDRTKRPKMGKIAAQLADV 415

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           A+VT DNPR+E+PE I  +++ GIP  +E     +R  AIRTAI      D +++AGKGH
Sbjct: 416 AVVTSDNPRTENPESILEDVLEGIPQSVEPMVICDRATAIRTAILQAKPGDGVLIAGKGH 475

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+   EK    D +  R+ L
Sbjct: 476 EDYQILGT-EKIHFDDREQARDAL 498


>gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8802]
 gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802]
          Length = 501

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 154/505 (30%), Positives = 247/505 (48%), Gaps = 20/505 (3%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           KLQDL+ K     E+       P    +R++  + ++S   Q G +F+ + G + DG  F
Sbjct: 3   KLQDLLAKVPTIQEI------PPHPSLQREVKGICTNSHACQQGDLFIGMPGTRVDGGQF 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
              A+  GA A +++   +          +  +++ ++     +  A+  Y    +   +
Sbjct: 57  WTSALEAGAVAAIITPEAAAHFPPT---PDVCVIIAEDMISVSAQLATAFYNYPTQQLKM 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++    +S   +  +G   T    F Q    TTP  + L + L+ 
Sbjct: 114 IGVTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQ 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  +  +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF+AK  LF  
Sbjct: 174 AVDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSP 233

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  AII  DDAY + +++          SV       +   +         T+   
Sbjct: 234 D-YLAKRAIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTP 292

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRG 355
                F  PL G+F + N L A    + +G+D   V+  L +   VPGR E V   + + 
Sbjct: 293 QGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQVINQLPQFMGVPGRMERVQISDQQE 352

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+I+  LAD+++V
Sbjct: 353 ISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVV 412

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +I+ GIP     +   +R  AI  AI+     D +++AGKGHE  
Sbjct: 413 TSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIHQAIQQAQPGDGVLIAGKGHEDY 472

Query: 473 HIVTNGEKKMSVDCDIIREILGLIL 497
            I+   EK    D +  ++ L + L
Sbjct: 473 QILGT-EKIHFDDREQAKKALAVKL 496


>gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
 gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
          Length = 490

 Score =  342 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 256/504 (50%), Gaps = 27/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++LI+    E++  +        + +I+ + SDSR ++ G++FVA+ G   DGH +I
Sbjct: 1   MELKELIHPL--EVLEVVGNT-----DVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENIL- 118
             AI +GA AIV     +L D    +  + P+ + V ++   L    S  Y    +N++ 
Sbjct: 54  QSAIGKGAAAIVCEEIPALSDEDIQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLIL 113

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
             VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP P+ L   ++ 
Sbjct: 114 VGVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMAR 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++
Sbjct: 174 MVEAGCEYAFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD 233

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP  + A+  ADD     +++                    + +      +  V     
Sbjct: 234 -LPTSAFALTNADDKAGLVMLQNTAARKLTYSLRTLADFKGKILESHFEGTEMLVNGREV 292

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F   F        YN L   G  +++G D   VL  L  LH V GRF+    + +G 
Sbjct: 293 MTRFVGRFN------AYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQ-TIQSPKGY 345

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L +I  +   +GR+I V GCGG+RD+GKRPIM K A  L+D  I
Sbjct: 346 TAIVDYAHTPDALTNVLNSIHEVLNGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLI 405

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   +   +R +AI+TA  +  K DV++VAGKGH
Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMEHTLCITDRAQAIKTATMLARKGDVILVAGKGH 465

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    V  G K    D + ++EI 
Sbjct: 466 EDYQEVK-GVKHHFDDREQLKEIF 488


>gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
 gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
          Length = 483

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 246/501 (49%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I  V  DSR  +  ++F+AI G K DG L++
Sbjct: 1   MKLIDILKGVNCEI--------KGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+VV                   ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAIAVVVDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTTKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G   + I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L   R++  +     FTNL +DH+D+H   +       +   +L
Sbjct: 166 VNKGVKYVVMEVSSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDME----EYAKTKSKL 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     +M  +  A      +      +  K +    +  +  + +E 
Sbjct: 222 FKMAKRASVINIDDKYSSMMIESSKAKVLTYGIEDFAYVM-AKDIRNSLDGVKFKVQIED 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F VYNAL A  +   +GI    V E L ++ V  GRFE V T      
Sbjct: 281 KKEEISLKIPGLFSVYNALAAITVADFLGISLRSVREALSQVTV-KGRFEPVETGK-DFY 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +++DYAHT + ++ +++ ++   +GR I++FG GGDRD+ KRP+MG+IA   AD  I+T 
Sbjct: 339 VFIDYAHTPDGIQNMMEALKEYKAGRKILLFGAGGDRDRIKRPLMGEIAGKYADFCILTS 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSE+P +I ++I  GI      ++   NR EAIR A+    K DV+++AGKGHET  
Sbjct: 399 DNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKGHETYQ 458

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ N +     + +I++EIL 
Sbjct: 459 IIGN-KVIPFDEREIVKEILS 478


>gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 483

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 245/501 (48%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I+ V  DSR  +  ++F+AI G K DG  ++
Sbjct: 1   MKLIDILKGVNCEI--------KGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V                    ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVTDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G   + I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  +R+D  +     FTNL +DH+D+HQ  +       +   +L
Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNME----EYAKTKGKL 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     +M  +  A      +      +  K +    +  +  + +E 
Sbjct: 222 FKMAKSASVINIDDKYSSMMIESSKAKVLTYGIKDFAYVM-AKDIRNSLSGVKFKVQIED 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F VYNAL A  +   +GI    V E L ++ V  GRFE V T      
Sbjct: 281 KKEEISLKIPGIFSVYNALAAITVADFLGISLRSVREALSQVTV-KGRFELVETGK-DFY 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + ++ I++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T 
Sbjct: 339 VIIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSEDP +I ++I  GI      ++   NR EAI  A+    K DV+++AGKGHET  
Sbjct: 399 DNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKGHETYQ 458

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ + +     + +I++EIL 
Sbjct: 459 IIGD-KVIHFDEREIVKEILS 478


>gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
 gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
          Length = 489

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 230/494 (46%), Positives = 313/494 (63%), Gaps = 14/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL     +   +    +I  +++DSR    G +FVA+ G K DG  ++
Sbjct: 1   MNLRDISGNAFPELK---ELLLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A         V+           + ++ P+LVV + R +LSL ASR YGK P+ ++AV
Sbjct: 58  KDA---------VAKGAVAVVSGHAVEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASFV+QI   +G ++ QIG T  I+   +D   LTTP P+ L   L+ L+S
Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+ L A  FTNLGRDH+DYH T + Y  AKMRLF+ L+ 
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVHLSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + +  A  AG  V +VG  G+++ LK+V    +KQ + +  +G  
Sbjct: 229 KGAPAVIFADDPWSDKAIGAAREAGLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+ +A  L+ LEKL    GR E VG    G   Y
Sbjct: 289 FEVDIPLAGDFQVANALVAAGLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  TSGRII VFGCGGDRD+GKRPIMG++A  L+DI IVTDDN
Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSED   IR+E++    G +E G+R EAIR A+ ML+  D L+VAGKGHE   IV +  
Sbjct: 409 PRSEDAATIRSEVMAAAAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKGHEEGQIVGS-V 467

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 468 TLPFSDHEQVRSAL 481


>gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 483

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 245/501 (48%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E+               I+ V  DSR  +  ++F+AI G K DG  ++
Sbjct: 1   MKLIDILKGVNCEI--------KGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA A+V                    ++V++ R  ++  AS  Y      +  +
Sbjct: 53  EEAIKNGAVAVVTDREIKE-------YPGITTVLVEDARAAMAKIASNFYNNPTSKLTLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +R       +G   + I      +  TTP  + L +  S +
Sbjct: 106 GVTGTNGKTSVTYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +V +E SSH L  +R+D  +     FTNL +DH+D+HQ  +       +   +L
Sbjct: 166 VNKGVKYVVMEVSSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNME----EYAKTKSKL 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     +M  +  A      +      +  K +    +  +  + +E 
Sbjct: 222 FKMAKSASVINIDDKYSSMMIESSKAKVLTYGIKDFAYVM-AKDIRNSLDGVKFKVQIED 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K  +    +PG F VYNAL A  +   +GI    V E L ++ V  GRFE V T      
Sbjct: 281 KKEEISLKIPGIFSVYNALAAITVADFLGISLRSVREALSQVTV-KGRFELVETGK-DFY 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + ++ I++ ++   +GR I++FG GGDRD+ KRP+MG++A   AD  I+T 
Sbjct: 339 VIIDYAHTPDGIQNIMEALKEYKTGRKILLFGAGGDRDKTKRPLMGEVAGKYADFCILTS 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSEDP +I ++I  GI      ++   NR EAI  A+    K DV+++AGKGHET  
Sbjct: 399 DNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKGHETYQ 458

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ + +     + +I++EIL 
Sbjct: 459 IIGD-KVIHFDEREIVKEILS 478


>gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 484

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 172/500 (34%), Positives = 275/500 (55%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++     +L+           +++I+ V+ DSR ++   IF+ I G   DGH +I
Sbjct: 1   MNLKDILKGIDYKLVQGS-------LDKEISSVNYDSRKVKKSDIFICIKGYATDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  I+      +QD    +  N  ++ V +TRK L+L     Y    + +  +
Sbjct: 54  QKAIENGASVII------MQDDIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G     IG   + I +       TTP  + L +  + +
Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +  +E SSH L+  R+ G+    G FTNL RDH+D+H+T + Y+N+K +LF+  
Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
               +  II  DD Y K+V+K  +    + +      +  + K        + ++  V  
Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIREDSNFKAFDEKMGSKNISFKVNL 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
            K+ +F+  +PGE+ +YNAL A G C  + I    + E + K+ V PGR E   TN    
Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIREGINKVIV-PGRCERTATNYNLP 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAHT + L+ IL+  R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIV
Sbjct: 343 YDIIIDYAHTPDGLQNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSE+P KI  +I+ GI    +    NR +AI+ A+++  + DV+V+AGKGHET  
Sbjct: 403 TSDNPRSEEPMKIIEDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ + +     + +I+++IL
Sbjct: 463 ILKD-KTIHFDEREIVKQIL 481


>gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
          Length = 490

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 254/504 (50%), Gaps = 27/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++LI+    E++  +        + +I+ + SDSR ++ G++FVA+ G   DGH +I
Sbjct: 1   MELKELIHPL--EVLEVVGN-----ADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENIL- 118
             AI +GA AIV      L D +  +  + P+ + V ++   L    S  Y    +N++ 
Sbjct: 54  QSAIEKGAAAIVCEEIPVLPDENMQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLIL 113

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
             VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP P+ L   ++ 
Sbjct: 114 VGVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMAR 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++
Sbjct: 174 MVDAGCEYAFMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD 233

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP  + A+  ADD     +++                    + +      +  V     
Sbjct: 234 -LPASAFALTNADDKSGLVMLQNTAAKKLTYSLRTLADFKGKILESHFEGTEMLVNGREV 292

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F   F        YN L   G  +++G D   VL  L  LH V GRF+    +  G 
Sbjct: 293 MTRFVGRFN------AYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQ-TIQSPLGY 345

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L  I  +   +GR+I V GCGG+RD+GKRPIM K A  L+D  I
Sbjct: 346 TAIVDYAHTPDALTNVLSGIHEVLDGNGRVITVVGCGGNRDKGKRPIMAKEAAKLSDQLI 405

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   +   +R +AI+TA  +  K DV++VAGKGH
Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMERTLCITDRAQAIKTATMLARKGDVILVAGKGH 465

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    V  G K    D + ++EI 
Sbjct: 466 EDYQEVK-GVKHHFDDREQLKEIF 488


>gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
 gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
          Length = 491

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 158/474 (33%), Positives = 242/474 (51%), Gaps = 13/474 (2%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K++ ++++S+ ++ G +F AI G K DGH FI  AI  GA A+V+S     + +S     
Sbjct: 19  KVSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKYP- 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   ++ DN RK  +  ++R Y    E   ++ VTGT+GK++V + + Q  + +G ++  
Sbjct: 78  DVTFVISDNIRKTQAEVSNRFYDHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTGI 137

Query: 147 IGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG            +  TTP  I     LS +  +G  +V  E SSH +DQ+R+ G    
Sbjct: 138 IGTIHYKYREKIFASGRTTPDSIEWFYLLSEMRDRGADYVVAEVSSHAVDQYRVYGTVFH 197

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            G FTNL +DH+DYH+  + YF  K     + ++   E       DD Y + + +   + 
Sbjct: 198 GGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDFKSC 257

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +     +     +                 G        L GEF +YN   A    +
Sbjct: 258 MNTISYGRDKNAQFRVSDFVVDMKGVSFCYEYNGIKRRVKSDLKGEFNIYNIAAAFSYLL 317

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G D   +    EKL  + GRFE   T  +   +  DYAHT +++E IL ++  I   R
Sbjct: 318 RSGFDIDFLHHATEKLKPIRGRFE---TVEKDFLVVNDYAHTPDAIEKILMSLNQIKKNR 374

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II+VFG GGDRD+GKRP+MGKIA +LADI I+T DNPRSEDP +I  +I  G+       
Sbjct: 375 IIIVFGAGGDRDRGKRPLMGKIAEELADIIILTSDNPRSEDPSRIIEDIKSGMKMEKEIY 434

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           E  +R EAI+ AIE+  K D++++AGKGHET  I+ + +     D D+ ++ LG
Sbjct: 435 EIIDREEAIKKAIEIARKDDIVLIAGKGHETYQIIGD-KTYYFDDLDVAKKYLG 487


>gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
          Length = 490

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 245/503 (48%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+            + P       I  +  DSR ++ G +F+ I G   DGH F 
Sbjct: 1   MKLQTLLSYL-------HDLTPYVGENPTITSIEMDSRQVKKGALFICIKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA AI+      +         + P++VV ++R+ +++ A   YG+    +  +
Sbjct: 54  KQAVENGAVAIIAERPLDV---------DVPVIVVRDSRRAMAVLADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++QI +++   +  IG     I   A   + TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEQIVRKANKKTGLIGTVHIKIGDDAYPTQNTTPESLLLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
           + +GV    +E SSH L   R+ G       FTNL +DH+DYH T + Y NAK       
Sbjct: 165 ADEGVDVAIMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +   A++  DD  S+    +   A   +         I  K++  + N     
Sbjct: 225 GNRYDHERPKFAVLNNDDPASQYY--KHMTAATVITYGTKTDSDIMAKRIDIVPNGMAFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            L G F VYN L A   C+  GI   +++E +E++  V GRFE V   
Sbjct: 283 LITPHGTARVKTKLIGLFNVYNLLAAVSACLVSGIPFPVIVEAIEEISGVAGRFETV-DE 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +      + VV GCGGDRD+ KRP+M K+A+  AD+
Sbjct: 342 GQDFTVIVDYAHTPDSLENVLKTAQQFARKNVYVVVGCGGDRDRTKRPLMAKVAVQYADV 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDPE+I  ++  G+P   ++   +R EAI  AIE   + D++++AGKGHE
Sbjct: 402 AIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEGDIVLIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+ +       D  + RE +
Sbjct: 462 TYQIIGD-RVIAFDDRLVAREAI 483


>gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 486

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 209/498 (41%), Positives = 290/498 (58%), Gaps = 20/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L      E        P  +  R+I  ++ DSR +    +F A+ G K DG  + 
Sbjct: 1   MRLDALFPDALIE--------PPAFGAREIAGLACDSRLVAKDQVFFAVPGTKADGLTYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+A+ +GA A+V   + S+   +A       ++ V + R  L++ ++R Y + PE ++AV
Sbjct: 53  PEAVRRGALAVVTEQSASVPFETAA------LVKVADVRSALAIASARFYARQPETVVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI    G  +  +G    ++        LTTP PI L + L  L+ 
Sbjct: 107 TGTSGKTSVAAFARQIWASLGFKAASVGTLGVVAPDGASYGGLTTPDPISLHRTLDELAG 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASSHGLDQHRLD ++L A  FTNL RDH+DYH T +AYF AK+ LF  +LP
Sbjct: 167 AGVTHLALEASSHGLDQHRLDYVRLKAAGFTNLSRDHLDYHPTLEAYFQAKLLLFTHVLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   ++ AD +   EV+  A   G +V S+G+ G+ +HL +         + ++  GKD
Sbjct: 227 ADGTVVVDADSSAGHEVIDVAKARGLKVFSLGFAGETLHLLEARPEAAATLLRLTFAGKD 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G FQ  NAL+AAGLCI+ G     V   LE+L   PGR E VG   RG  I+
Sbjct: 287 WALRLPLVGSFQAANALMAAGLCISTGAAPDAVFAALERLEGAPGRLEKVG-ERRGASIF 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE  L+ +R  T  R+IV+FGCGGDRD GKRP+MG+IA  LAD  IVTDDN
Sbjct: 346 VDYAHKPDALEKALQALRPFTQKRLIVIFGCGGDRDAGKRPLMGEIAARLADHVIVTDDN 405

Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PRSEDP+ IR  I+ G    P   E G+R  AI++ I ML   D+L++AGKGHET  I+ 
Sbjct: 406 PRSEDPDLIRKAILQGAGSGPHIREIGDREAAIKSGIGMLEPGDLLLIAGKGHETGQILA 465

Query: 477 NGEKKMSVDCDIIREILG 494
           +       D D  R  L 
Sbjct: 466 D-RTLPFSDRDCARAALE 482


>gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
 gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
          Length = 487

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 157/506 (31%), Positives = 245/506 (48%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+    P       +  +   + ++  V+ DSR I+ G +FVA+ G + DGH FI
Sbjct: 1   MKLQELLKNIEP-------VQIIGDADVEVTGVNIDSRKIKEGHLFVAMKGTQVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+A+  GA++++        D           + V +T   +   A+  YG       ++
Sbjct: 54  PKALELGAKSVLCE------DMPEEKVEGVTYIQVASTEDAVGKVATLFYGDPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +    + I   A     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNMLLGKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y NAK   F + 
Sbjct: 168 VEAGCEYAFMECSSHAIAQKRIGGLQFAGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K + AI  ADD     +++          +         + +        ++     G
Sbjct: 227 LSKTAFAITNADDKNGMIMVQNTKATVKTYSTRSMADFRARILECHFGGMYLEIDGREVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     VL  +  LH V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPI-QSPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++LE +L  I  +  G+   +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLEGKGGEVITVCGAGGNRDKGKRPLMAQEAVKQSDKVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  +  K DV++VAGKGH
Sbjct: 400 ITSDNPRFEEPQDIINDMLAGLNAQQMKKVISIVDRKEAIRTACMLAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    +  G K    D ++IR+I G+
Sbjct: 460 EDYQEIK-GVKHHFDDKEVIRDIFGI 484


>gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
 gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
          Length = 477

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 162/470 (34%), Positives = 232/470 (49%), Gaps = 12/470 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + ++SDSR + AG +FVA  G+  DG  +IPQAIA GA A++  +      FS       
Sbjct: 15  SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQAIANGAGAVLWEAEG----FSWPADLQA 70

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L V + RK     A   YG       ++ VTGT+GK+S   ++          +  IG
Sbjct: 71  VNLPVKDLRKQAGEIADEFYGHPSSALWMVGVTGTNGKTSCTQWLTHCLNSLQRKTAVIG 130

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                          TTP PI L   L+    QG    ++E SSHGLDQ R++G+     
Sbjct: 131 TLGNGFPGELATAINTTPDPIVLHGLLAEYLKQGAVATAMEVSSHGLDQGRVNGVHFDIA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH    +Y  A  +      P    A++ A+DAY    ++   + G  V
Sbjct: 191 VFTNLTRDHLDYHGDMDSY--AAAKRRLMEWPGLKLAVLNAEDAYGLTFLQALRSEGRPV 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G Q   +H   +       Q++++    D      + G F  YN L      +A+ +
Sbjct: 249 LSYGMQSGDVHCTSLHLHETGMQLSVTTPWGDVTLHAAVMGRFNAYNLLAVLATLLAMDV 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                 + +  L  VPGR E  G N+    + +DYAHT ++LE  L+ +R  T G++  V
Sbjct: 309 PLEAAAQAIATLKPVPGRMEQYGGNAMPV-VVIDYAHTPDALENALQALREQTRGKLWCV 367

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446
           FGCGGDRD GKRP+MG IA  LAD  +VT DNPRSE+P+ I A+I   +        +R 
Sbjct: 368 FGCGGDRDAGKRPMMGAIASRLADHVVVTSDNPRSENPDTIIADITASMGRNHQIMVDRR 427

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            AI  AIE     D+++VAGKGHET   +  G +    D D++  +LG +
Sbjct: 428 AAIAHAIEQAAPGDIVLVAGKGHETYQEIK-GVRHPYSDVDVVTTLLGAV 476


>gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 484

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 168/500 (33%), Positives = 274/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++     +L+           +++I+ V+ DSR ++   +F+ I G   DGH +I
Sbjct: 1   MNLKDILKGIDYKLVQGS-------LDKEISSVNYDSRKVKKSDVFICIKGYATDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  I+      +QD    +  N  ++ V +TRK L+L     Y    + +  +
Sbjct: 54  QKAIENGASVII------MQDEIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G     IG   + I +       TTP  + L +  + +
Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +  +E SSH L+  R+ G+    G FTNL RDH+D+H+T + Y+N+K +LF+  
Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
               +  II  DD Y K+V+K  +    + +      +  + K        + ++  V  
Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNL 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
            K+ +F+  +PGE+ +YNAL A G C  + I    +   + K+ V PGR E   TN    
Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIKNGINKVIV-PGRCERTATNYNLP 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAHT + L+ IL+  R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIV
Sbjct: 343 YDIIIDYAHTPDGLKNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSE+P +I  +I+ GI    +    NR +AI+ A+++  + DV+V+AGKGHET  
Sbjct: 403 TSDNPRSEEPMRIIDDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ + +     + +++++IL
Sbjct: 463 ILKD-KTIHFDEREVVKQIL 481


>gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8801]
 gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801]
          Length = 501

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 153/505 (30%), Positives = 247/505 (48%), Gaps = 20/505 (3%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           KLQDL+ K     E+       P    +R++  + ++S   Q G +F+ + G + DG  F
Sbjct: 3   KLQDLLAKVPTIQEI------PPHPSLQREVKGLCTNSHACQQGDLFIGMPGTRVDGGQF 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
              A+  GA A +++   +          +  +++ ++     +  A+  Y    +   +
Sbjct: 57  WTSALEAGAVAAIITPEAAAHFPPT---PDVCVIIAEDMISVSAQLATAFYNYPTQQLKM 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++    +S   +  +G   T    F Q    TTP  + L + L+ 
Sbjct: 114 IGVTGTNGKTTTTHLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQ 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G  +  +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF+AK  LF  
Sbjct: 174 AVDAGNHYCVMEVSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSP 233

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  AII  DDAY + +++          SV       +   +         T+   
Sbjct: 234 D-YLAKRAIINLDDAYGQRLIQGLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTP 292

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRG 355
                F  PL G+F + N L A    + +G+D   ++  L +   VPGR E V   + + 
Sbjct: 293 QGTIPFTSPLVGQFNLSNLLAAVATVVHLGLDLNQIINQLPQFMGVPGRMERVQISDQQE 352

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+I+  LAD+++V
Sbjct: 353 ISVIVDYAHTPDSLENLLKAARPFIPGQMICVFGCGGDRDRTKRPLMGQISAKLADVSVV 412

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR+EDP++I  +I+ GIP     +   +R  AI  AI+     D +++AGKGHE  
Sbjct: 413 TSDNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIDQAIQQAQPGDGVLIAGKGHEDY 472

Query: 473 HIVTNGEKKMSVDCDIIREILGLIL 497
            I+   EK    D +  ++ L + L
Sbjct: 473 QILGT-EKIHFDDREQAKKALAVKL 496


>gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
 gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 161/502 (32%), Positives = 236/502 (47%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L       ++           + +I  +  DSR + +G +F  I G   DGH F 
Sbjct: 2   MKLSELT-----NVLRSYEWKNEG--DPEITHIEMDSREVVSGTLFFCIKGYTVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+ +GA A++        +         P ++V +T++ ++  A+  YG     +  +
Sbjct: 55  KQAVEKGAVALIAEREVKGVE--------VPTIIVQDTKRTMARLANLFYGDPTSKMNLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++QI   +   +  IG     I       + TTP  I L K    +
Sbjct: 107 GVTGTNGKTTVTHLLEQIMNDANKRTGLIGTMYTKIGDVELKTQNTTPESITLQKRFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
               V    +E SSH L   R+ G       FTNL  DH+DYH+T +AY  AK       
Sbjct: 167 VDADVETALMEVSSHALHLGRVRGCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLFAQL 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +   A++  DD  + E++K                     + +         T+ 
Sbjct: 227 GNRFTEGKVAVLNRDDEAADELLKMTTVDVLTYGVENKADIM--AEDIEITARGTTFTLK 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G F VYNAL AA   IA GI    + + LE +H V GRFE V     
Sbjct: 285 AGTESIEIEMKLIGMFSVYNALAAASAAIASGIPLEQIKKSLEAVHGVAGRFEPVDAGQ- 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHTS+SLE +L  +R    G+I VV GCGGDRD+ KRP+M +IA   AD AI
Sbjct: 344 DYTVIVDYAHTSDSLENVLTTVREFAKGKISVVVGCGGDRDRTKRPVMAEIATKYADNAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP++I  ++ HG+    +    +R EAI  AI   NK D+LV+AGKGHET 
Sbjct: 404 FTSDNPRSEDPKQILDDMTHGLESSNYTVCVDRKEAIYQAINDANKDDILVIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+         D ++ ++ + 
Sbjct: 464 QIIGANTT-HFDDREVAKQAIE 484


>gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
 gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
          Length = 511

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 162/504 (32%), Positives = 248/504 (49%), Gaps = 16/504 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+        +  S+      ER +  +S++S   Q G IF+ + G + DG  F 
Sbjct: 16  MKLHDLLNNVP----SISSLPNHPALERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFW 71

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  GA A ++S   + +        +  +++VD+     +  A+  Y    +  N++
Sbjct: 72  QSAMEVGATAAMISPQAAEKFPPT---DDHCVMIVDDLITVAAEVAAAFYHYPAQQLNMI 128

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +    +  IG        F Q    TTP    L + L+  
Sbjct: 129 GVTGTNGKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAEA 188

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +  +E SSH L Q R+         FTNL +DH+D+H+  + YF AK  LF   
Sbjct: 189 VSANNEYCVMEVSSHALAQGRVKQCPFKVSVFTNLTQDHLDFHKDMEDYFAAKQLLFTPD 248

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII  DD Y K +++          SVG      + + +    N    T+    
Sbjct: 249 -YLQEKAIINLDDPYGKRLIESLKPEQVWSYSVGDTQADFYTRDLTYRGNGVTGTLHTPL 307

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
              +F  PL G+F + N L A    + +G+D   ++E L     VPGR E V  N  +  
Sbjct: 308 GTVNFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQDI 367

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE  LK  R    G++I VFGCGGDRD+ KRP+MG+ + +LAD+++VT
Sbjct: 368 TVIVDYAHTPDSLENSLKAARPFIQGQLICVFGCGGDRDRTKRPLMGQASAELADVSVVT 427

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I  +I+ GIP  +E     +R EAI+TAI      D +++AGKGHE   
Sbjct: 428 SDNPRTEDPQRILEDILTGIPETVEPFVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQ 487

Query: 474 IVTNGEKKMSVDCDIIREILGLIL 497
           I+   EK    D +   + L + L
Sbjct: 488 ILGT-EKIHFDDREEAGKALEIRL 510


>gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 483

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 163/502 (32%), Positives = 267/502 (53%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  ++      +I +          ++I ++  DSR ++ G +FV I G   DGH + 
Sbjct: 1   MNLNLILKSLEYSIIKEDK--------KEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA+ IV            +   +  I+ V ++RK L++ +S  YG   +   I+
Sbjct: 53  KKAYDNGAKVIVCEKDLE----DLSYYKDCTIIKVPDSRKALAIMSSNYYGNPSKHIKII 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I +++G     +G   + I +   ++  TTP  + L K    +
Sbjct: 109 GITGTNGKTTSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V +  +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+  
Sbjct: 169 VDEKVDYCVMEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I  DD+Y ++V+K+A   G ++     +   +  + +       +     + 
Sbjct: 229 QNS----VINIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKN 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           +       +PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G 
Sbjct: 283 EKETIALNIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGY 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T
Sbjct: 343 DVIVDYAHTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+EDP+ I  +++ GI    +I    R +AIR A+EM  + DV+VVAGKGHE   I
Sbjct: 403 SDNPRTEDPKLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEMAKENDVIVVAGKGHEDYQI 462

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           + + +     + ++I E++  I
Sbjct: 463 LKD-KTIHFDEREVIEELIKEI 483


>gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 489

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 231/495 (46%), Positives = 313/495 (63%), Gaps = 14/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSR +  G  FVA+ G K DG  FI
Sbjct: 4   MKLRDLAGDQFPELEAQLEG-PAGLLD--ISGLSSDSRKVMPGNAFVAVAGTKADGAGFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A              ++   S  + ++ P+  V   R+FLS+ A+R +G+ P+ ++AV
Sbjct: 61  VDA---------AGRGAAIAIASQAVDASIPVFAVKEPRRFLSIAAARFHGRQPDTMVAV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L   L+ L+ 
Sbjct: 112 TGTAGKTSVASFTRQIWAYAGHAAAMIGTTGVVSPTRNEYGSLTTPDPVSLHALLAELAG 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 172 EGVTHAAMEASSHGLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLP 231

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S + +K A +AG  + +VG +G ++ LK+V    +KQ   I + G+ 
Sbjct: 232 KGSPAVIFADDPWSAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL ++ G+++ + +  LEKL    GR E VG    G   Y
Sbjct: 292 FEVDIPLAGDFQVANALVAAGLAMSTGVEAKIAMAALEKLVGASGRLELVGHTKDGALAY 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 352 VDYAHKPDALENVLGSVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIACRLADVVIVTDDN 411

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+       E  +R  AIR A+ ML   D L+VAGKGHE    +  G 
Sbjct: 412 PRSEEPASIRAEIMTAASCAAEIADRAMAIREAVGMLRSGDTLIVAGKGHEEGQTIG-GV 470

Query: 480 KKMSVDCDIIREILG 494
                D   +R+ L 
Sbjct: 471 TLPFSDHAEVRKALE 485


>gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechocystis sp. PCC 6803]
 gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
          Length = 505

 Score =  341 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 161/504 (31%), Positives = 241/504 (47%), Gaps = 18/504 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERK-----INEVSSDSRHIQAGWIFVAIVGNKEDG 56
           KL  L+    PE++        +          +  +S++S     G +F+ + G + DG
Sbjct: 3   KLGQLLASV-PEVVAAAPWLAQESDRCPALGKIVTGLSTNSHACPPGTLFIGMPGTRVDG 61

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
             F   A+  GA A VVS     +      ++   ++ V +     +  A+  Y    + 
Sbjct: 62  GEFWSGALEAGAIAAVVSEKALQKFPP---QNGECVIAVPDLVPVCAGLAAAFYQHPAQT 118

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
             ++ VTGT+GK++ +  ++    +   SS  +G        + +    TTP    L K 
Sbjct: 119 LQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGTLYTRWPGYQKTATHTTPFATDLQKQ 178

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+     G  +  +E SSH L Q R+         FTNL +DH+D+H T + YF AK  L
Sbjct: 179 LAEALQAGNQYAVMEVSSHALAQGRVLQCGFACAVFTNLTQDHLDFHGTMENYFAAKALL 238

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+E    +  A+I  DD Y + ++ R         SV       + K +       + T 
Sbjct: 239 FKES-YLQGRAVINQDDPYGQRLIDRLPLDQVYTYSVNDSTADFYTKDLDYQPTGVKGTF 297

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTN 352
                +F FL PL G+F + N L A    + +G+D A +++ L     VPGR E      
Sbjct: 298 VTPQGEFPFLSPLVGQFNLANVLAAIASGLHLGLDPAAMVKDLLDFPGVPGRMEQVQIRP 357

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE  LK  R    GR+I +FGCGGDRD+ KRP+MG IA  LAD+
Sbjct: 358 DQDISVMVDYAHTPDSLENALKAARPFIPGRLICIFGCGGDRDRTKRPLMGNIAAQLADL 417

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           A+VT DNPR+EDPE+I A+++ GI   IE    G+R  AI  AI      D +++AGKGH
Sbjct: 418 AVVTSDNPRTEDPEQILADVVQGISLDIEPWIIGDRATAIHKAIREAKPGDGVLIAGKGH 477

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+   EK    D +  RE L
Sbjct: 478 EDYQILGT-EKIHFDDREQAREAL 500


>gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
 gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
          Length = 486

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 198/500 (39%), Positives = 281/500 (56%), Gaps = 20/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L                    +  I  V++DSR    G +F A+ G K+DG  FI
Sbjct: 1   MRLSQLFALC--------GTSQSLTDDPDILAVTADSRRAGPGTLFFALRGAKQDGSAFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQAI+QGA A++V    +  D +       P++V  + +  L+  AS L G  P  I A+
Sbjct: 53  PQAISQGAAAVIVDQETARPDSA------VPVIVRPDAKHLLACMASALAGPQPSCIAAI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLS 178
           TGT+GKSS A F++Q+    G  +  +G    IS         LTTP P+ L++ L+ L+
Sbjct: 107 TGTNGKSSTADFLRQLWILQGNRAASLGTLGLISDTDVPAPPSLTTPDPVSLSQTLAALA 166

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GV HV++EASSHGL+QHRLDG+ L A  F+NL RDH+DYH T +AY  AK+RLF+E+L
Sbjct: 167 RNGVEHVALEASSHGLEQHRLDGVTLTAAGFSNLTRDHLDYHLTLEAYRAAKLRLFDEVL 226

Query: 239 PKESPAIIYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           P    A + AD        +   A     ++ SVG  G  + L +     + Q + +++ 
Sbjct: 227 PTGGIAAVNADMDSETFSALQDIAARRSLKLRSVGRNGTTLRLIEARPTPSGQILRLALH 286

Query: 297 GKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G++       LPG FQ  N ++AA +C     D+  V+  L +L  V GR E       G
Sbjct: 287 GEELPEISLSLPGRFQADNVMLAAAMCWQDDADTRQVVALLPRLTGVHGRCERAVALPNG 346

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              YVDYAHT ++L+ +L ++R  T+GR++VVFG GGDRD+GKRP+MG +A  +AD+AIV
Sbjct: 347 AAAYVDYAHTPDALDCVLSSLRPHTTGRLVVVFGAGGDRDRGKRPLMGAVAARMADLAIV 406

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPR+E+P  IR+EI+   P  +E  +R  AI   +E L   D+LVVAGKGHE   IV
Sbjct: 407 TDDNPRTEEPSSIRSEILAACPDALEIADRRSAIAAGLEALQPGDILVVAGKGHEQGQIV 466

Query: 476 TNGEKKMSVDCDIIREILGL 495
              E     D  +IRE+ G+
Sbjct: 467 GT-EILPFDDRLVIRELAGV 485


>gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
 gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
          Length = 494

 Score =  340 bits (872), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 165/500 (33%), Positives = 243/500 (48%), Gaps = 19/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+            +   +  + +++ + ++S    AG +F+ I G + DG  F 
Sbjct: 1   MKLRELLAAVD-------GVEYPKTGDVEVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFW 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+A GA A +VS     ++          ++   N  K  +  ++  YG   +   +L
Sbjct: 54  QSALASGAVAAIVSPEAVQKNPPTPESL---VISASNMNKACAQISAAFYGYPGQQLRML 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +  L +  +G        F+Q    TTP  + L + L+  
Sbjct: 111 GVTGTNGKTTTTHLIEYFLTKVNLPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQA 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH L Q R+ G       FTNL +DH+DYHQ  + YF AK  LF   
Sbjct: 171 VDAGCEFGVMEVSSHALAQDRVFGCPFEVAVFTNLTQDHLDYHQDMEDYFGAKALLFSPD 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII ADD Y + ++           SV      + +  +          +    
Sbjct: 231 -YLQGRAIINADDEYGQRLITGLSKERVWTYSVNNHHADLRMSDLNYQPIGVSGILHTPK 289

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
            D  F  PL G++ + N L A    + +G+D  LV   + K   VPGR E V  +     
Sbjct: 290 GDVAFSSPLVGQYNLENLLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDV 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SL  +LK++R    GRII VFGCGGDRD+ KRP MGKIA +LADIA+VT
Sbjct: 350 SVIVDYAHTPDSLGNLLKSVRAFIPGRIICVFGCGGDRDRTKRPKMGKIAAELADIAVVT 409

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPE+I  +I+ GIP  +      +R  AIR AI      D +++AGKGHE   
Sbjct: 410 SDNPRTEDPERIIEDILAGIPDTLQPMVICDRATAIRAAILEAKPGDGVLLAGKGHEDYQ 469

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  RE L
Sbjct: 470 ILGT-EKIHFDDREQAREAL 488


>gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 494

 Score =  340 bits (872), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 227/480 (47%), Gaps = 23/480 (4%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             ++ +I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +    
Sbjct: 18  DSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAERELDV---- 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                + P+++V  + + LS+ +   YG+  + +  + +TGT+GK+S    V +I +++G
Sbjct: 74  -----DVPVIIVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAG 128

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  IG     I       + TTP  + L K    ++ + V    +E SSH L   R+ 
Sbjct: 129 KRTGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGRVH 188

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKE 255
           G       FTNL +DH+DYH+T   Y  AK  LF              A++ ADD  S  
Sbjct: 189 GCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASAY 248

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K                     K +          +            L G+F VYN 
Sbjct: 249 FEKVTAAHISTYGIKNNADVM--AKNITITAQGTSFDLVTNKGTKHITMSLVGQFNVYNV 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A   CIA GI    +   +E+LH V GRFE V    +   + VDYAHT +SLE +L  
Sbjct: 307 LAAVATCIAAGIPFETITAAVEELHGVRGRFELV-NQQQEFPVIVDYAHTPDSLENVLNT 365

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R +T G++ VV GCGGDRD+ KRP M KIA++LAD  I T DNPRSEDP  I  ++  G
Sbjct: 366 CRDMTEGKLFVVVGCGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILRDMEAG 425

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +    +    NR +AI  AI    K DV+++AGKGHET   + + E     D ++    +
Sbjct: 426 VENEYYHSIANREQAIFFAIANAKKGDVVLIAGKGHETYQQIGS-ETFDFDDAEVAARAI 484


>gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. WCH70]
 gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70]
          Length = 490

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 241/503 (47%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+                      I  +  DSR ++ G +F+ I G   DGH F 
Sbjct: 1   MKLQTLLSYL-------HDFTTYVGENPTITSIEMDSRQVKNGALFICIKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA A++      +         + P++VV ++R+ +++ A   YG+    +  +
Sbjct: 54  KQAVENGAVAVIAERPLDV---------DVPVIVVRDSRRAMAMLADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I +++   +  IG     I       + TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEHIARKANKKTGLIGTVHIKIGDHTYPTKNTTPESLLLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             +GV    +E SSH L   R+ G       FTNL +DH+DYH T + Y NAK       
Sbjct: 165 VDEGVDVAVMEVSSHALHMGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +   A++  DD  SK    +   A   +         I  KK+  + +     
Sbjct: 225 GNRYDHERPKFAVLNNDDPASKYY--KHMTAASVITYGIETDSDIMAKKIDIVPSGMSFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            L G F VYN L A   C+  GI   +++E +E++  V GRFE V   
Sbjct: 283 LITPNGTVRVKTRLIGLFNVYNLLAAVSACLVSGIPLPVIVEAIEEISGVAGRFETV-DE 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK IR     ++ VV GCGGDRD+ KRP+M K A+  AD+
Sbjct: 342 GQNFTVIVDYAHTPDSLENVLKTIRQFAQKKVYVVVGCGGDRDRTKRPLMAKTAVKYADV 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDPE+I  ++  G+P   ++   +R EAI  AIE   + D++++AGKGHE
Sbjct: 402 AIFTSDNPRSEDPEQILRDMEAGVPGERYVTIVDRKEAIYYAIEQAQEGDIILIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+ +       D  + RE +
Sbjct: 462 TYQIIGDRVID-FDDRLVAREAI 483


>gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 486

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 162/496 (32%), Positives = 262/496 (52%), Gaps = 28/496 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+                +  + +I  ++ DSR +  G +F AI G   DG+ FI
Sbjct: 1   MKLKKLLNHI---------GISYEGIDLEILSITDDSREVIPGSLFFAITGFSTDGNKFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P+AI +GA A++  +A  ++ +S   +   P + V + R+  +L  S+ +G+  +   ++
Sbjct: 52  PEAIKKGAVAVISDNAEVVKLYSKKYK--VPFIYVKDIREKEALIVSKFFGEPSKKLKVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            VTGT+GK++ +  +  +  + G  +  IG     + + +     TTPS +   K L   
Sbjct: 110 GVTGTNGKTTTSYIIYNVLNKLGHKTAIIGTVEYGTPYKRKAASRTTPSSLEYNKLLREF 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q +  V  E SSHGL+ HR+ GIK     FTNL +DH+D+H+    YF +K +LF   
Sbjct: 170 LDQKIEFVVSEVSSHGLELHRVTGIKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLFFL- 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +S ++I  DD + K +        C +++ G  GK   ++ V       ++T+ +E 
Sbjct: 229 --TKSISVINIDDPFGKVLSGLRAIFPCELITYGKNGKV-KIENVENKKFGSEITLRLEN 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K +     L GE+  YN   A  L +++G  +  + +  E + V PGR E V  N     
Sbjct: 286 KRYVIKTNLKGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIKV-PGRLEEVVEN----- 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +++DYAHT ++LE +L  +  I  G++I VFGCGGDRD+ KRP MGK+A   +D  I+T+
Sbjct: 340 VFIDYAHTPDALEKVLTVLSQIKKGKLITVFGCGGDRDREKRPFMGKVAEKFSDRVIITN 399

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE+P KI  +I+ GI      I   NR EAI  A+E     D++++AGKGHE   I
Sbjct: 400 DNPRSEEPSKIIEDILSGIENREKVIVIPNRKEAIFKALEEKRGNDIVLIAGKGHENYQI 459

Query: 475 VTNGEKKMSVDCDIIR 490
           + N +K    D +++ 
Sbjct: 460 IGN-KKIHFSDREVVE 474


>gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
 gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
          Length = 484

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 160/504 (31%), Positives = 242/504 (48%), Gaps = 31/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ+L+       I       +   +  I  V+ DSR I  G  FVA+ G + DGH FI
Sbjct: 1   MNLQELLKSIKSLAI-------IGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AI  GA+AI+        D           + V +T + +   A+  YG   +   ++
Sbjct: 54  PKAIELGAKAILCE------DMPEDRTDGVTYVQVASTAEAVGKLATAFYGYPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +    + I         TTP  I L + L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKMGHRCGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH + Q R+ G+      FTNL RDH+DYH T + Y NAK   F++ 
Sbjct: 168 VDAGCEYVFMECSSHAIAQRRIGGLTFTGALFTNLTRDHLDYHGTFENYRNAKKMFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + AI  ADD     +++                    + ++        V  +  G
Sbjct: 227 LPKSAFAITNADDKNGMFMVQNTKATIKTYSMERMADFRARIIEMHFAGMYLNVDGNDVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G    +G     +L  L  LH V GR E +  +S G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPI-QSSEGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAHT ++L  +L  IR +   G+II V G GG+RD+GKRP+M + A+  +D  I+T
Sbjct: 340 AIVDYAHTPDALANVLNAIREVDKTGQIITVCGAGGNRDKGKRPLMAQEAVKQSDRVIIT 399

Query: 417 DDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR E+P+ I  +++ G     +   +   +R EAI+TA  +  K DV++VAGKGHE 
Sbjct: 400 SDNPRFEEPQDIIDDMLAGLNTQQMKKVVSIADRREAIKTACMLAKKGDVVLVAGKGHEN 459

Query: 472 VHIVTNGEKKMSVDCDIIREILGL 495
              +  G K    D ++IREI G+
Sbjct: 460 YQEIK-GVKHHFDDREVIREIFGI 482


>gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 496

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 157/505 (31%), Positives = 244/505 (48%), Gaps = 27/505 (5%)

Query: 8   YKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            K+  EL+  +            I  V+ DSR  + G +F+ + G+K DGH +I QA A 
Sbjct: 2   AKNLQELVALMPGCEVRGDINLTITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAG 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++V    S++           ++ V +TR  +       +    +   ++ VTGT+
Sbjct: 62  GAVAVLVEKEVSVE-------PGMTVIKVSDTRAAMQAITPFFFDYPSQKLRVIGVTGTN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    ++ I  ++G     IG   T I       + TTP  + L   L+ + + G+ 
Sbjct: 115 GKTTTTHLIRSILMQAGYKVGLIGTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMD 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SSH L  +R  G +   G FTN+ RDH+D+H T + Y +AK  LF  +   ++ 
Sbjct: 175 YAVMEVSSHALALNRTAGCEFDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNV 234

Query: 244 -----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A+I  DD  +  +++               G  +  + +    +  +        
Sbjct: 235 KTGKSAVINTDDPAAAHMLREVTYRAITYGVQD--GADLTARNINIQADGAKFEAVTTRG 292

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G F VYN L A G+ +A GI+  +V   LE    VPGRFE V        +
Sbjct: 293 IIPLALQITGLFNVYNVLAAIGVALAEGIEPDVVKTALEAFRSVPGRFEIVDAGQ-PFTV 351

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE ILK  R     RII VFGCGGDRD+ KRPIMG++A + AD+ + T D
Sbjct: 352 IVDYAHTPDGLENILKTARQFAQRRIIAVFGCGGDRDRTKRPIMGRLAAEYADVVVATSD 411

Query: 419 NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPR+EDP  I  EI  GI         +    +R +AI  A+ +   QD++++AGKGHET
Sbjct: 412 NPRTEDPVSILKEIEVGIREGLKPGKSYEVIVDRRQAIERALSLAEPQDIVIIAGKGHET 471

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ + +     D ++ REI+  +
Sbjct: 472 YQILKD-KTIPFDDREVAREIIREM 495


>gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 150/496 (30%), Positives = 230/496 (46%), Gaps = 19/496 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++       I    + P  + + +++ + SD+R ++   IFVAI G   DGH FIP+AI 
Sbjct: 1   MLASTLISEIKFKVVSPKDYDDFEVSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIR 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
           +GA+AIVV                  I+ V+NT + L++ A + YG       ++ VTGT
Sbjct: 61  KGAKAIVVQEETDDI-------QGVTIVRVNNTNRALAILADKFYGSPSSSMKVIGVTGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V   ++ I +     +  IG               TTP  + L K  + +  + V
Sbjct: 114 NGKTTVTHMIEAIFRDQKDRTGLIGTMYRRIGEKTYPTANTTPDILTLQKTFAEMKKENV 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLP 239
              ++E SS  L Q R+ GI +    FTN  +DH+DYH+T   Y +AK            
Sbjct: 174 KAAAIEVSSIALIQGRVWGIDVDTAVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYG 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+I  DD   K   +                  I    V          + V   +
Sbjct: 234 NDKTAVINIDDEMGKNFAQDTATQVLTYGIKN--DAMIKASNVNIHSQGTDFDLKVFEDE 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G   A G+    ++E LEK   V GR + + ++  G    
Sbjct: 292 YHLHVKTVGMFNVYNLLAAFGAAYANGVSVHAIIESLEKFPGVKGRLQLI-SSDCGISAI 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDY+HT + L   L+ I    SG +  V GCGGDRD  KRP M +IA++ ++  I T DN
Sbjct: 351 VDYSHTPDGLLNALETINEFASGDVYCVVGCGGDRDATKRPKMAQIAVEYSNHPIFTSDN 410

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           PR+EDPEKI  +++ G+P        +R EAI+ A+   N  D++++AGKGHE   I+ +
Sbjct: 411 PRTEDPEKILDQMLSGVPEKNVPVYLDRREAIQAAVNAANPGDIILIAGKGHEDYQIIGH 470

Query: 478 GEKKMSVDCDIIREIL 493
             K    D +   + L
Sbjct: 471 -TKHHFDDAEEATKAL 485


>gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 500

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 171/499 (34%), Positives = 267/499 (53%), Gaps = 26/499 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+DLI          +    ++  ++ I +++ +S++ + G  FV I G K DGH +I 
Sbjct: 16  KLKDLIENI------DVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYID 69

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AI  GA  +VV   +        I      +   NTRK L++ ++  +G   ++   + 
Sbjct: 70  EAIKNGARLVVVDEFFDTSKIDGKID----YIKTSNTRKALAVMSANFFGHPSKDFLLIG 125

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S    ++ I + +      IG   + I S   + + TTP    L K    + 
Sbjct: 126 VTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMK 185

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           ++GV  V +E SSH L+ +R+       G FTNL +DH+D+H T + YF AK++LFE   
Sbjct: 186 NEGVDSVVMEVSSHSLELYRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFEMSK 245

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A    DD++ K +++   +              +  K V    NK Q  +   GK
Sbjct: 246 KRVVNA----DDSWGKRIIEMYPDCVT---YAKDSDAQVCTKNVKLFVNKNQFELWYNGK 298

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    +PG F +YN+L AA  CI++GI+   + + LE L  VPGRFE V +N R   I
Sbjct: 299 KEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNER-FTI 357

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT D
Sbjct: 358 VIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSD 417

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  I
Sbjct: 418 NPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKGHETYQI 477

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       +  I+++IL
Sbjct: 478 LKD-RTIPFDERKIVKDIL 495


>gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 531

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 167/522 (31%), Positives = 257/522 (49%), Gaps = 37/522 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI     +  N +        +  +  +  +SR ++   +F AI GN  DGH+F+
Sbjct: 1   MKLSRLIDGLKADQRNPVLEITGAQGDPDVISIQYNSRLVKPQGLFTAIKGNAVDGHIFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             A+ +GA A+V                   ++ V ++R+ L+  AS  +G+  E +   
Sbjct: 61  QDAVKKGAAAVVTEEPVEA-------PIGVAVIRVKDSRRALANMASEFFGRPTEKLKLA 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V  F + +   +G     +G  S       +++ +TTP  + L + L+ +
Sbjct: 114 GITGTNGKTTVTYFAEAMLGAAGCKVGIVGTVSSRWPGHEKESSVTTPESLELQETLARM 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GVTH  +E SSH L Q R    +  AG FTN+ +DH+DYH+  ++YF AK  LF++L
Sbjct: 174 VDAGVTHAIIEVSSHALTQSRPAFCQFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDL 233

Query: 238 L----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           L     +   A+I  DD     + +          +   +G  I    V A  +  +  +
Sbjct: 234 LAASTKENKTAVINLDDPQGAVLCREVKTPVL--CTGLTEGSSIRSIDVKAGADGLKGVM 291

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +  F  P  G   +YN + AAG+ +A G+    V   L     VPGR E V  N 
Sbjct: 292 ETPAGELVFESPAVGRHNLYNLMSAAGVGLAFGLSLEEVEMGLNAAVNVPGRLEKV-ENG 350

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               ++VDYAHT ++LE +L+ +R ++  +II VFGCGGDRD+GKRP MG  A   +D+ 
Sbjct: 351 LDRHVFVDYAHTPDALENVLEALRRVSKAKIITVFGCGGDRDKGKRPKMGAAAARHSDLV 410

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-------------------FIEKGNRIEAIRTAIE 454
           +VT DNPRSEDPE I  +I+ GI G                   F+ + +R +AI TAI 
Sbjct: 411 VVTSDNPRSEDPEAIIDDILPGISGEGAQRLNASYCMMCSRKSAFMVEPDRRKAILTAIM 470

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
                D++++AGKGHET  IV NG +    D    R  L  +
Sbjct: 471 SSGPGDLVLIAGKGHETYQIVKNG-RFAFDDRVEARNALECL 511


>gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 494

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 148/500 (29%), Positives = 236/500 (47%), Gaps = 22/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +++       +        +  + ++  ++ DSR +  G +F A  G+K DG  F 
Sbjct: 1   MNLGEILSS-----VKLPRPLAPELAQTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFA 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             A+A+GA A++  S        A        + V++ R  L+L A   +G+  E +   
Sbjct: 56  ADALARGAVAVISES-------LAPPDLAARWIQVEHGRHALALAARTFFGRPDERLGLT 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A     + + +G  +  IG      +        TTP  + L +  S L
Sbjct: 109 GITGTNGKTTTAYLTDSVLRAAGGVTAMIGTIEYHLAGRVLKAVNTTPESLDLLQIFSDL 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G THV++E SSH L   R+ G+      FTNL RDH+D+H   + YF AK  LFE  
Sbjct: 169 LRAGGTHVTMEVSSHALALGRVHGLNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGA 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +   D      + R H    R+         +  + + +     +  +    
Sbjct: 229 GGNPPRFAVLNTDDEYSRRL-RLHARTERLWYGMTPEADLRPRHIVSSFKGLRFDLQFRK 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + F    PL G+  VYN L A     + G+   +V   +  L  VPGRFE V    +   
Sbjct: 288 QRFTIESPLIGKINVYNILAACATGFSYGLAPEVVARGIASLKAVPGRFERV-DEGQPFV 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L  ++   R +   R+I +FGCGGDRD+ KRP+MGK A + +D  ++T 
Sbjct: 347 VVVDYAHTDDALRNVIAVARGLNPRRVITLFGCGGDRDRAKRPLMGKAAAEASDFVVLTS 406

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSEDP  I  + + GI       + + +R  AIR AI+   + D++++AGKGHET  
Sbjct: 407 DNPRSEDPLTIMNDALVGIRRTDVAHVVEPDREAAIRRAIKEAREGDIVILAGKGHETYQ 466

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           ++ +       D  + RE+L
Sbjct: 467 VLKDKTID-FDDRAVAREVL 485


>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
          Length = 508

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 152/514 (29%), Positives = 247/514 (48%), Gaps = 39/514 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         +++  ++       + +I+ ++ DSR ++ G +F A+ G   DGH + 
Sbjct: 1   MKLS--------QIVADVTSQGELAADVEISHLAYDSRCVRPGTLFFALRGVLVDGHDYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             A+ +GA A+VV     L D           +VVD++R  ++  A+  Y    + +L  
Sbjct: 53  KSAVERGAVAVVVEQPVDLPD-------EIVQVVVDDSRYAMARCAACFYDYPAQGMLIV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++   ++ + +++G +   +G   + +   A +   TTP  + L + L+  
Sbjct: 106 GVTGTNGKTTMTYLLESVLKQAGYTPAVVGTISNRMGDDAVEAEHTTPESLDLQRILAEF 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            SQG   + +E SSH L Q R+ G+      FTNL  +H+DYH+  ++YF AK RLF+E 
Sbjct: 166 KSQGADALVIEVSSHALMQSRVVGLTFDVAVFTNLTPEHLDYHKNMESYFAAKTRLFKEP 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +   D       K        +    ++G  + +  V         T+    
Sbjct: 226 QIYGDFTAVVNTDDPYG--AKLVRELNEPLSVGMHRGADVRVCDVEQTMQGTVATLETPQ 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     PL G F + N L A G  + + +    + + L   + VPGR E V  N+ G  
Sbjct: 284 GEITVRSPLVGPFNLENLLCAVGAGLVLDLPITTIEQGLAAANRVPGRLEPV-DNTLGAL 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDYAHT ++L   L+ +  +   RII VFGCGGDRD  KRP MG++A   +D++IVT 
Sbjct: 343 IVVDYAHTGDALAKALEAMAALKPQRIITVFGCGGDRDTLKRPAMGEVAGRYSDLSIVTS 402

Query: 418 DNPRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNKQD 460
           DNPR+E+P KI  +I  GI                   ++   +R EAI  A+  L   D
Sbjct: 403 DNPRTENPAKIIDDIKVGIERICPNLAVDGDPDSVGKCYVVIEDRHEAIVYAVNQLRAGD 462

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +L++AGKGHE   ++   +K    D + +R  L 
Sbjct: 463 LLLIAGKGHEDYQVIGT-QKIHFDDREQVRLALE 495


>gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
 gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
          Length = 501

 Score =  339 bits (869), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 248/503 (49%), Gaps = 16/503 (3%)

Query: 6   LIYKDFPELINQLSIFP----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L  K    L+N LS  P        ER++  +S++S   Q G IF+ + G + DG  F  
Sbjct: 2   LTSKKLQYLLNNLSNIPSLPNHSALEREVKGISTNSHSCQLGDIFIGMPGTRVDGGEFWQ 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A+  GA A ++S   + +      + +  +++V++     +  A+  Y    +   ++ 
Sbjct: 62  SAMEVGAVAAIISPQAAQKFPP---KDDDCVIIVEDIITVAAQIAAAFYDYPAQQLKMVG 118

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT+GK++    V+    +    +  IG        F +    TTP    L + L+   
Sbjct: 119 ITGTNGKTTTTHLVEYFLNQCQKPTALIGTLYTRWPGFERTAVHTTPFAPELQEQLAEAV 178

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +    +  +E SSH L Q R+         FTNL +DH+D+H+  + YF AK  LF    
Sbjct: 179 AANNEYCVMEVSSHALVQGRVKQCPFQVSVFTNLTQDHLDFHKDMEDYFAAKRLLFTPD- 237

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  AI+  DD Y K ++           SV       +   +    N    T++    
Sbjct: 238 YLQEKAIVNLDDPYGKRLIDSFQTEQVWTYSVEDTKADFYTSNLTYQANGVTGTLTTPFG 297

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGR 357
           + +F  PL G+F + N L A    + +G+D   V+E L     VPGR E V  N  +   
Sbjct: 298 NIEFTSPLVGQFNLSNVLAAVATVLYLGLDVREVVEKLPHFLGVPGRMERVQINDKQDIS 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP+MG+ +  LAD+++VT 
Sbjct: 358 VIVDYAHTPDSLENLLKAARPFIKGKMICVFGCGGDRDRTKRPLMGQASAQLADVSVVTS 417

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP++I  +++ GIP  IE     +R +AI TAI   N  D +++AGKGHE   I
Sbjct: 418 DNPRTEDPQRILEDVLTGIPETIEPLVISDRAKAINTAILQANPGDGVLIAGKGHEDYQI 477

Query: 475 VTNGEKKMSVDCDIIREILGLIL 497
           +   EK    D +  R+ L + L
Sbjct: 478 LGT-EKIHFDDREEARKALEIRL 499


>gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 484

 Score =  339 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 168/500 (33%), Positives = 273/500 (54%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++     +L+           +++I+ ++ DSR +    IF+ I G   DGH +I
Sbjct: 1   MNLKDILKGIDYKLVQGS-------LDKEISSINYDSRKVNKSDIFICIKGYATDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  I+      +QD    +  N  ++ V +TRK L+L     Y    + +  +
Sbjct: 54  QKAIENGASVII------MQDDIEVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G     IG   + I +       TTP  + L +  + +
Sbjct: 108 GITGTNGKTTTAFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV +  +E SSH L+  R+ G+    G FTNL RDH+D+H+T + Y+N+K +LF+  
Sbjct: 168 VNKGVEYCVMEVSSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLFKR- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
               +  II  DD Y K+V+K  +    + +      +  + K        + ++  V  
Sbjct: 227 ---SNIRIINNDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNL 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
            K+ +F+  +PGE+ +YNAL A G C  + I    +   + K+ V PGR E   TN    
Sbjct: 284 EKEEEFILSIPGEYNIYNALGAIGACYKLNIPMEAIKNGINKVIV-PGRCERTATNYNLP 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAHT + L+ IL+  R  T GR+I +FGCGGDRD+ KRP MGKI  D+ADIAIV
Sbjct: 343 YDIIIDYAHTPDGLQNILETARGFTQGRLIAIFGCGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSE+P +I  +I+ GI    +    NR +AI+ A+++  + DV+V+AGKGHET  
Sbjct: 403 TSDNPRSEEPMRIIEDILVGIEKDNYEIIENRKDAIKKAMDIAKENDVIVIAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ + +     + +++++IL
Sbjct: 463 ILKD-KTIHFDEREVVKQIL 481


>gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parasuis SH0165]
 gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           SH0165]
          Length = 496

 Score =  339 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 159/482 (32%), Positives = 232/482 (48%), Gaps = 18/482 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SA 84
           +++N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  +   +Q       
Sbjct: 18  KELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRFAEK 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
              S   +L V N  K LS  A   YG   E +  + +TGT+GK++ A    Q     G 
Sbjct: 78  FANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGG 137

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S + +   L+     G    ++E SSHGL Q+R + 
Sbjct: 138 KSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAMEVSSHGLAQYRAEA 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH T + Y  AK RLF EL  K+      ADD   ++ + +  
Sbjct: 198 LDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVIN--ADDEIGRKWLAKLP 255

Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                         Q ++I  K V        +       + +    L G F V N L A
Sbjct: 256 EAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTA 315

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKN 375
               +A+G D   ++E    L+ V GR E + +         + VDYAHT ++LE  L  
Sbjct: 316 FAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDYAHTPDALEKALDA 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDDNPR+EDP+ I  +++ G
Sbjct: 376 ARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRTEDPDVIFNDVMKG 435

Query: 436 IPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                   +   R  AI  AI     +DV+++AGKGHE   I+   +K    D +  R+ 
Sbjct: 436 FRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWARKF 494

Query: 493 LG 494
           LG
Sbjct: 495 LG 496


>gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
 gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
          Length = 496

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 158/482 (32%), Positives = 232/482 (48%), Gaps = 18/482 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SA 84
           +++N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  +   +Q       
Sbjct: 18  KELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRFAEK 77

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
              S   +L V N  K LS  A   YG   E +  + +TGT+GK++ A    Q     G 
Sbjct: 78  FANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFSQWRNLLGG 137

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S + +   L+     G    ++E SSHGL Q+R + 
Sbjct: 138 KSAVMGTIGNGLYGQVQEAVNTTGSAVEIQHNLANFVELGADFCAMEVSSHGLAQYRAEA 197

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH T + Y  AK RLF EL  K+      ADD   ++ + +  
Sbjct: 198 LDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVIN--ADDEIGRKWLAKLP 255

Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                         Q ++I  K V        +       + +    L G F V N L A
Sbjct: 256 EAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTA 315

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKN 375
               +A+G D   ++E    L+ V GR E + +         + VDYAHT ++LE  L  
Sbjct: 316 FAGLLALGYDLQKLVETAPLLNGVCGRMECLISEENAEESPMVIVDYAHTPDALEKALDA 375

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  VFGCGGDRD GKRP+M +IA  LAD  I+TDDNPR+EDP+ I  +++ G
Sbjct: 376 ARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIITDDNPRTEDPDVIFNDVMKG 435

Query: 436 IPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                   +   R  AI  AI     +DV+++AGKGHE   I+   +K    D +  R+ 
Sbjct: 436 FRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWARKF 494

Query: 493 LG 494
           LG
Sbjct: 495 LG 496


>gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 497

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 156/505 (30%), Positives = 249/505 (49%), Gaps = 26/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E++    I     +E  I  ++++S+ ++  + F AI G   DGH FI
Sbjct: 1   MKL-------LKEILTDEKII-YGNQETVIEGITNNSKKVEKNYAFFAIKGTSVDGHNFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  I +     ++        N  +++ DN RK L+L ++R Y    E   ++
Sbjct: 53  DEAIKNGASVIFIEDEKYVESLKG---KNITVVLTDNGRKSLALASNRFYDNPSEKLKVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
           A+TGT+GK++ ++ + Q  + +G     IG  +         +  TTP P+   K L  +
Sbjct: 110 AITGTNGKTTTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V  E SSH  DQ+R+   K   G FTNL +DH+DYHQT + YF AK R+FE++
Sbjct: 170 KDKGADVVVAEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQI 229

Query: 238 LPKESPAIIYADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 AI   +            +         ++++ G   +   +        + + 
Sbjct: 230 DEFNKEAIYSINVDDEYGRRILDYLKNHLKVNDDKIITYGKTSEDFKILDYRLSLFETEF 289

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   +         L G F +YN   A    I  G D   + E    L  + GRFE    
Sbjct: 290 SYKYKDTLSKIKTKLRGVFNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKGRFEV--I 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +G  + +DYAHT ++LE ILK++  I   RII VFG GG+RD+ KRP+MG+ A  L+D
Sbjct: 348 EGQGFIVVIDYAHTPDALENILKSLNEIKENRIIAVFGAGGNRDKTKRPLMGETAEKLSD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I I+T DNPR+EDP  I  +I+ GI      I   +R +AI  AI +  ++D++++AGKG
Sbjct: 408 IVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKG 467

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I+ + +     D ++++EI+
Sbjct: 468 HENYQIIGD-KILHFDDAEVVKEII 491


>gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 484

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 248/501 (49%), Gaps = 29/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L D++      ++           +  I  +  DSR+ + G +FVAI G K DG  +I
Sbjct: 1   MRLADVLKDIEYTIVKG-------NVDVDIRGICYDSRNSKDGSMFVAIKGFKSDGADYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA A++V           +I  +  ++ V NTRK L+  AS  YG   + +  +
Sbjct: 54  GDAIERGAVAVLVD-------GEISIDKDITLIKVQNTRKSLAKIASNYYGDPSKQLFLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   ++ I +        IG   + I         TTP  + L + L  +
Sbjct: 107 GVTGTNGKTSVTYMIKSILESQNNKVGLIGTIQNMIGDKVYPTERTTPESLDLQRYLRLM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +V +E SSH L  +R+D        FTNL +DH+D+H+T   Y NAK +LF   
Sbjct: 167 VDEGVKYVVMEVSSHSLALNRVDECDFDIAVFTNLTQDHLDFHKTMDDYANAKAKLFRM- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D     ++    NA      +      +  K +       + T+ +E 
Sbjct: 226 ---AKTACVINIDDDYSSLIIENSNAKVVTYGIKDYAYIM-AKDIKNDIKGAKYTVQIED 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    +PG F VYN+L A  +   +GI    V   L+ + +  GRFE +        
Sbjct: 282 IKSDIALKIPGLFSVYNSLAAISVAFILGIPLQSVKIALKDVKI-KGRFEIL-DIDAPYN 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + LE ++K      +GR I++FGCGGDRD+GKRP MG++A   AD  I+T 
Sbjct: 340 VVIDYAHTPDGLENLMKAFGEYDTGRKILLFGCGGDRDKGKRPKMGEVAGKYADFVIITS 399

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSEDP +I +EI  GI      +    NR EAI+ A+ +    D++++AGKGHET  
Sbjct: 400 DNPRSEDPMQIISEIEMGIKNTKCPYKIIENRKEAIKYALSIAKDNDIVILAGKGHETYQ 459

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           ++ +       + +I++EIL 
Sbjct: 460 VLKDRVID-FDEREIVKEILN 479


>gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 493

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 156/477 (32%), Positives = 239/477 (50%), Gaps = 13/477 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            K+ E+  DSR  + G +FVA+ G++ DG  +I QAI +GA A++  +  + Q       
Sbjct: 17  IKLTEMILDSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQHLQIEWH 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P++      + LS  A   Y    + +  + VTGT+GK++++  + Q  +  G +S 
Sbjct: 77  QDVPVIQFYQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKLLGHTSA 136

Query: 146 QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G          ++   TT S + +  +L+    QG   V++E SSHGL QHR++ +  
Sbjct: 137 VMGTIGNGLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVSSHGLVQHRVEALDF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---AH 261
               FTNL RDH+DYH T + Y  AK RLF EL PK       ADD    E +     A 
Sbjct: 197 DVAIFTNLSRDHLDYHLTMENYAAAKKRLFTELKPKHQIIN--ADDPVGVEWLAELGSAV 254

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              CR      Q K++   K+   +    +       + +    L GEF V N L+    
Sbjct: 255 AVSCREDFHPTQKKWLKATKITFNNKGAHIQFESSWGNGELHSGLIGEFNVSNLLLVFAT 314

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++  D   +L     L  V GR E +  +++     VDYAHT ++LE  L+  R    
Sbjct: 315 LLSLDYDFDELLRTASSLTGVCGRMEMLTQSNQPT-AIVDYAHTPDALEKALQAARLHCQ 373

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           G++  VFGCGGDRD GKRP+M  IA  LAD  IVTDDNPR+E  EKI  +I+ G      
Sbjct: 374 GQLWCVFGCGGDRDTGKRPLMAHIAERLADKVIVTDDNPRTEAAEKIMQDILLGFEDQSA 433

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                +R +AI  AIE  + +D +++AGKGHE   I+   +K    D +++++   +
Sbjct: 434 VKILHDREQAIAFAIEQADPEDTILIAGKGHEDYQIIG-KQKHHFSDQEMVKKYFDV 489


>gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
 gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
          Length = 483

 Score =  339 bits (868), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 243/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+    P  I       +   E +I  ++ DSR I  G +FVA+ G + DGH FI
Sbjct: 1   MELSKLLKNIKPTAI-------VGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA+A++        D           + V +T   +   A+  +G       ++
Sbjct: 54  SKAIELGAKAVLCE------DMPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G     +    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F + 
Sbjct: 168 VKAGCEYVFMECSSHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD     +++          +         + +        +V     G
Sbjct: 227 LPKDAFAITNADDKNGMVMVQNCKATIKTYSTRTMADFRARIIECHFEGMYLEVDGHEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     VL  +  L  V GR E +  ++ G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIR-SAEGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +DYAHT ++LE +L  I  + +  GR+I V G GG+RD+GKRP+M   A+  +D  I+
Sbjct: 340 AIIDYAHTPDALENVLSAIHEVLNGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  M  K DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +++REI 
Sbjct: 460 DYQEIK-GVKHHFDDKEVVREIF 481


>gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
 gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
          Length = 488

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 239/503 (47%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+           +       +  I  +  DSR ++ G +FV I G   DGH + 
Sbjct: 1   MKLTKLLTYLKN------APSYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA  +GA AIV                + P++++ +T++ L++ +   YG+  +   ++
Sbjct: 55  RQAAEKGAAAIVAEREVDA---------DVPVIIIRHTKRALAVLSDAFYGQPTKQLRLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+S +  V++I +++G  +  IG   T       + + TTP  + L K    +
Sbjct: 106 GITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFRKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
             QGV    +E SSH L   R+ G      +FTNL +DH+DYH+T + Y +AK  LF   
Sbjct: 166 VDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFSQL 225

Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                      A++ ADD  S    +                     + +          
Sbjct: 226 GGSFNHETPKWAVLNADDPASAYFAQVTSAHLLTYGIQNDADVM--AENIKMAPKGTTFD 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +           PL G F VYN L AA + IA  I  A + E +E L  V GRFE V   
Sbjct: 284 LVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVDAG 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT +SLE +L   R +T G++ VV GCGGDRD+ KRP M KIA+DLAD 
Sbjct: 344 Q-DFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDLADE 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            + T DNPRSE+P  I  ++  G+ G  +    NR +AI  AI    K DV+++AGKGHE
Sbjct: 403 PVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKGHE 462

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G+     D ++ +  +
Sbjct: 463 TYQQIG-GQTFDFDDAEVAKRAI 484


>gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580]
          Length = 488

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 162/505 (32%), Positives = 240/505 (47%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL  L+          L   P      +  I  +  DSR ++ G +FV I G   DGH 
Sbjct: 1   MKLTKLL--------TYLKNVPSYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHD 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           +  QA  +GA AIV                + P++++ +T++ L++ +   YG+  +   
Sbjct: 53  YARQAAEKGAAAIVAEREVDA---------DVPVIIIRHTKRALAVLSDAFYGQPTKQLR 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK+S +  V++I +++G  +  IG   T       + + TTP  + L K   
Sbjct: 104 LIGITGTNGKTSTSHMVEEIFRKAGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFR 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  QGV    +E SSH L   R+ G      +FTNL +DH+DYH+T + Y +AK  LF 
Sbjct: 164 KMVDQGVDTAVMEVSSHALHMGRVHGCDYDIAAFTNLTQDHLDYHETMEEYKHAKSLLFS 223

Query: 236 -----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                        A++ ADD  S    +                     + +        
Sbjct: 224 QLGGSFNHETPKWAVLNADDPASAYFAQVTSAHLLTYGIQNDADVM--AENIKMAPKGTT 281

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +           PL G F VYN L AA + IA  I  A + E +E L  V GRFE V 
Sbjct: 282 FDLVTPKGSAQVTIPLVGLFNVYNVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVD 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VDYAHT +SLE +L   R +T G++ VV GCGGDRD+ KRP M KIA+DLA
Sbjct: 342 AGQ-DFPVIVDYAHTPDSLENVLNTCRGLTEGKLFVVVGCGGDRDKTKRPKMAKIAVDLA 400

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  + T DNPRSE+P  I  ++  G+ G  +    NR +AI  AI    K DV+++AGKG
Sbjct: 401 DEPVFTADNPRSENPLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET   +  G+     D ++ +  +
Sbjct: 461 HETYQQIG-GQTFDFDDAEVAKRAI 484


>gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 486

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 163/500 (32%), Positives = 258/500 (51%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DLI          +    ++  ++ I +++ +S++ + G  FV I G K DGH +I
Sbjct: 1   MKLKDLIENI------DVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  +VV   +        I      +   NTRK L++ ++  +G   ++   +
Sbjct: 55  DEAIQNGACLVVVEEFFDTSKIEGKID----YIKTSNTRKALAVMSANFFGHPSKDFLLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I + +      IG   + I S   + + TTP    L K    +
Sbjct: 111 GVTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF   
Sbjct: 171 KNEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMS 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A         +   +        V         +  + +    NK Q  +   G
Sbjct: 231 KKRVVNA-------DDRWGKRIIEMYPDSVTYAKDSDAQVCARNIKLFVNKNQFELWYNG 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +    +PG F +YN+L A+  CI++GI    + + LE L  VPGRFE V  ++    
Sbjct: 284 EKEEITLNIPGLFSIYNSLAASACCISLGIKLDTIKKGLENLKAVPGRFEIV-ESNEKFT 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 343 IVIDYAHTPDGLLNLMKTVDEVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTS 402

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 403 DNPRTEDPLKIIADILEGIRKTNVEYMVIPDRYEAIKYAIKNARENDFIVLAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       +  I+++IL
Sbjct: 463 ILKD-RTIPFDERRIVKDIL 481


>gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
 gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
          Length = 483

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 242/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+    P  I       +   E +I  ++ DSR I  G +FVA+ G + DGH FI
Sbjct: 1   MELSKLLKNIKPTAI-------VGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA+A++        D           + V +T   +   A+  +G       ++
Sbjct: 54  SKAIELGAKAVLCE------DMPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G     +    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F + 
Sbjct: 168 VKAGCEYVFMECSSHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K++ AI  ADD     +++          +         + +        +V     G
Sbjct: 227 LSKDAFAITNADDKNGMVMVQNCKATIKTYSTRTMADFRARIIECHFEGMYLEVDGHEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     VL  +  L  V GR E +  ++ G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIR-SAEGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +DYAHT ++LE +L  I  + +  GR+I V G GG+RD+GKRP+M   A+  +D  I+
Sbjct: 340 AIIDYAHTPDALENVLSAIHEVLNGKGRVITVCGAGGNRDKGKRPLMAVEAVKQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  M  K DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +++REI 
Sbjct: 460 DYQEIK-GVKHHFDDKEVVREIF 481


>gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 483

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 158/490 (32%), Positives = 264/490 (53%), Gaps = 17/490 (3%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    ++  +++I ++  DSR ++ G +F+ I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLGYSFIKEDKKEIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ AS  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----ELSYYKDCTIIKVPDSRKALAIMASNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G   + I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+         +I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD+Y ++V+K+A   G ++     +   +  + +       +     + +       +
Sbjct: 234 NIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E L  +  VPGR E V  N   G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ + +    
Sbjct: 412 TLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD-KTIHF 470

Query: 484 VDCDIIREIL 493
            + ++I E++
Sbjct: 471 DEREVIEELI 480


>gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
 gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
          Length = 487

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 145/500 (29%), Positives = 254/500 (50%), Gaps = 25/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++     ++IN  +       +  I+++  DSR I+   +F+AI G   DGH +I
Sbjct: 1   MKLNKILNGIEHKIINGKN-------DLNISDLQYDSRKIKNNDLFIAIKGFNVDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
            +A+ +GA A++V              S    + V+NTRK +++ A   +       +++
Sbjct: 54  KEAVEKGATAVIVEKKLKK------YLSGITYIEVENTRKEMAVLAKNFFANPLADIDLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  +  I +++   +   G   + I+        TTP  + L +  S  
Sbjct: 108 GITGTNGKTTTAYLIYNILRKNSFKTAMFGTIKNIIAGEEISATRTTPESLDLYRYFSQA 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + GV ++ +E SSH LD +R+  +      FTNL  +H+DYH+   +Y  AK +LF + 
Sbjct: 168 KTAGVQYIVMEVSSHALDLYRVHQMDFSLAVFTNLSPEHLDYHKDLASYRQAKSKLFSQ- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  ++ A+I  DD  S  +++++     +                   ++    +  +  
Sbjct: 227 LSPDASAVINLDDKNSGFMLEKSKAHNFKYSLSNQNADLYCQNYKLKQNSLNYQSQGLIK 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++F         F +YN+L A      +GI +  ++  LE++  VPGRFE +    +  +
Sbjct: 287 RNFQLKLGGI--FNIYNSLAAVLSVFLLGISADKIVNSLEEIKGVPGRFELI-NAGQDFQ 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + +E +L+  + IT  R+IV+FGCGGDRD+ KRP+M K+A D AD   +T+
Sbjct: 344 LIVDYAHTPDGMENVLEAAKEITKNRLIVLFGCGGDRDRSKRPVMAKLAEDNADYVFLTN 403

Query: 418 DNPRSEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSEDPE I +EI  G       +    +R +AI  AI    K D++++ G+GHE   
Sbjct: 404 DNPRSEDPEFILSEIKSGFSNSFSNYEVISDRKKAIVEAINFAKKDDIILILGRGHEKYQ 463

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           ++ + + ++  D  +  + L
Sbjct: 464 VIKDKKIEL-DDRKVAYQAL 482


>gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens FZB42]
 gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42]
          Length = 490

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 161/503 (32%), Positives = 234/503 (46%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     E +         + +  I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLTKLLTYLMAEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA AIV      +         + P+++V  +++ LS+ +   YG+  + +  +
Sbjct: 55  QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+S    V +I +++G  +  IG     I       + TTP  + L K    +
Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
           + + V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF   
Sbjct: 166 NDEHVDTAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225

Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  K   A++ ADD  S    K                     K++          
Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFEKVTAAHILTYGIENDADVM--AKQIEISAQGTSFE 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            L G F VYN L AA   IA G+    +   LE+L  V GRFE V  N
Sbjct: 284 LVTPKGTKQITVSLVGRFNVYNVLAAAATGIAAGLPFDTITSALEELQGVRGRFELVNHN 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ +AD 
Sbjct: 344 Q-PFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADE 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AGKGHE
Sbjct: 403 PIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGHE 462

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   + N E     D ++    +
Sbjct: 463 TYQQIGN-ETFDFDDAEVAGRAI 484


>gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
 gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
          Length = 485

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 162/506 (32%), Positives = 246/506 (48%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+            I      + +I  V+ DSR I+ G +F+A+ G + DGH FI
Sbjct: 1   MKLSELLKNVKV-------IASQGNIDVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA AI+      L+D    +      + V +T +     A+  YG+      ++
Sbjct: 54  SKAIELGAVAIL------LEDMPEELNEKVTYIQVASTEEEAGKVATMFYGEPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ +  G     +    + I+        TTP PI L   L+ +
Sbjct: 108 GVTGTNGKTTIATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK   F+  
Sbjct: 168 VEAGCEYAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + AI  ADD     +++                    + +        +V     G
Sbjct: 227 LPKTAFAITNADDKNGMIMVQNTKATVKTYSIKRMADFRAKILECHFEGMYLEVDGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     VL  +  L  V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPI-QSPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++LE +L  I  +  G+   +I V G GG RD+GKRP+M + A+  +D  I
Sbjct: 340 AVVDYAHTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  +++ G+        +   +R EAIRTA  M  K DV++VAGKGH
Sbjct: 400 LTSDNPRDEEPQAIIDDMLAGLDTTQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    + NG K    D ++IREI G+
Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFGI 484


>gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
 gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
          Length = 509

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 164/501 (32%), Positives = 249/501 (49%), Gaps = 17/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+ K     +        Q  E +I  ++++S   Q G +F+ + G + DG  F 
Sbjct: 11  MKLRELLAKVSSISLTN----NYQALETEIKGLATNSHACQTGDLFLGMPGTRVDGGDFW 66

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
             AIA GA   +VS + + +  +     N  ++ V +  +     A+  Y        ++
Sbjct: 67  KSAIANGAVGAIVSVSAATKHPA----KNECVIPVADMSQTCPEIAAAFYDYPGQKMKMV 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I   + L +   G        F +    TT  P+ L   L+  
Sbjct: 123 GITGTNGKTTTTHLVEFILNNAQLPTALFGTLYMRWPGFQKTAAYTTSFPVELQNQLAQA 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E SSH LDQ R+ G       FTNL +DH+DYH+    YF AK RLF   
Sbjct: 183 LAAGSKYGIMEVSSHSLDQKRVWGCTYEVAVFTNLTQDHLDYHKDMDDYFEAKARLFSSD 242

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AI+ ADD Y ++++ R  +      S       +    +       +  +    
Sbjct: 243 -YLKGRAIVNADDPYGQKLIARLESEKVWSYSTSDTSTDLWASDLEYKPTGVKGMLHTPK 301

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGG 356
            +  F  PL G++ + N L A G  + +G+D ++V+  L     VPGR E V  T  +  
Sbjct: 302 GEMIFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDV 361

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +L+D+A+V+
Sbjct: 362 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELSDLAVVS 421

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPE+I  +I+ GI      +   +R EAIRTAI      D +++AGKGHE   
Sbjct: 422 SDNPRTEDPERILQDILEGISPEVKPLVISDRAEAIRTAIMEAQSGDGVLIAGKGHEDYQ 481

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+   EK    D +  R  L 
Sbjct: 482 ILGT-EKIHFDDREQARNTLR 501


>gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 483

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 160/493 (32%), Positives = 267/493 (54%), Gaps = 17/493 (3%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLEYSFIKENKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ +S  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G   + I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+         +I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD+Y ++V+K+A   G ++     +   +  + +       +     + +       +
Sbjct: 234 NIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           + I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ + +    
Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD-KTIHF 470

Query: 484 VDCDIIREILGLI 496
            + ++I E++  I
Sbjct: 471 DEREVIEELIKEI 483


>gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum F str. 230613]
          Length = 483

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 162/502 (32%), Positives = 266/502 (52%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  ++       I +          ++I ++  DSR ++ G +FV I G   DGH + 
Sbjct: 1   MNLNLILKSLGYSFIKEYK--------KEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA+ IV            +   +  I+ V ++RK L++ +S  YG   +   I+
Sbjct: 53  KKAYDNGAKVIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKII 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I +++G     +G   + I +   ++  TTP  + L K    +
Sbjct: 109 GITGTNGKTTSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V +  +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+  
Sbjct: 169 VDEKVDYCVMEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNA 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +I  DD+Y ++V+K+A   G ++     +   +  + +       +     + 
Sbjct: 229 QNS----VINIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKN 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           +       +PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G 
Sbjct: 283 EKETIALNIPGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGY 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T
Sbjct: 343 DVIVDYAHTPDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+EDP+ I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I
Sbjct: 403 SDNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQI 462

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           + + +     + ++I E++  I
Sbjct: 463 LKD-KTIHFDEREVIEELIKEI 483


>gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
 gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
          Length = 485

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 153/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++Y           I      + +I +++ DSR +  G +FVA+ G + DGH +I
Sbjct: 1   MLLSDILYNI-------SLITVSGKTDIEIEQITFDSRQVNKGTLFVAVPGTQSDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI  GA A++             +      + V+N+ K + + A   YG   +   ++
Sbjct: 54  ETAIDAGASAVLCE------VLPKMLEEEVTYIQVENSAKSMGIAAGNFYGNPSKRLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SVA+ + ++ ++ G     I    + I         TTP  I L   L  +
Sbjct: 108 GVTGTNGKTSVATLLFKLFRKLGYKCGLISTVQNQIEDEIIPATHTTPDSITLNALLHEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SSH + Q R+ G+    G FTN+ +DH+D+H+T   Y  AK   F + 
Sbjct: 168 HQKGCAFVFMEVSSHSVVQGRISGLHFSGGIFTNITQDHLDFHKTFDEYIKAKK-GFFDA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+   DD   K +++                    +             + +E 
Sbjct: 227 LPSTAFALTNVDDRNGKVMLQNTKAEKHSYSLKNIADFKGKVLDCGLFG------LQMEI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +  F L G+F  YN L   G  + +  +   +L  L +L   PGRFE V ++ +   
Sbjct: 281 DKQEVWFKLIGQFNAYNLLAVYGAAVLLEENPENILTELSQLTPPPGRFEQVISSQQ-TV 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L+ +L+ I  +  G  R+I V GCGG+RD+GKRP+M  IA +L+D  I+
Sbjct: 340 GIVDYAHTPDALKNVLETINGLRQGHERVITVVGCGGNRDKGKRPLMAGIACELSDTVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+PE I  ++  GIP           +R EAIR A+ +   +D+++VAGKGHE
Sbjct: 400 TSDNPRFEEPEDILKDMEAGIPITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   V  G K    D + ++   
Sbjct: 460 TYQDVK-GVKSHFDDREELKLAF 481


>gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
 gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
          Length = 498

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 245/501 (48%), Gaps = 28/501 (5%)

Query: 9   KDFPELINQL-SIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           K   EL  ++  I+ +  R+  +I  +S+DSR I+ G++FV I G   DG  F  QA+ +
Sbjct: 2   KTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVEK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++ +           +      + V +    L       Y    + +  + VTGT+
Sbjct: 62  GAVAVLTNKHLD-------LPLEITQITVPDIHAALEDIVPYFYDYPGKKMRMIGVTGTN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  +  I + +G     IG     I     +   TTP  + L   L+ + ++G+ 
Sbjct: 115 GKTTTSHIIAHILREAGYHVGVIGTIHALIDDKELEIHNTTPDVVELQALLALMCAEGMD 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-----EELL 238
           +V +E SSH L  +R+ GI+     FTNL +DH+D+H++ + Y  AK +LF     E  +
Sbjct: 175 YVVMEVSSHALALNRVAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEPPV 234

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K   A+I  DD ++ E++K                       +          +     
Sbjct: 235 KKNKTAVINIDDPHADEILKATSCKVLTYGVEKDADL--KGSNLQVGLKSSSFDVVGPFV 292

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G F VYN L A G   A G+D+ ++ + ++  + VPGRFE V    +   I
Sbjct: 293 SVSLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFELV-EAGQDFAI 351

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDY+HT +SLE  L   R +   RII VFGCGGDRD+ KRPIMG IA   ADI IVT D
Sbjct: 352 VVDYSHTPDSLEKALTTARAMKPNRIITVFGCGGDRDRTKRPIMGGIAAQYADIPIVTSD 411

Query: 419 NPRSEDPEKIRAEIIHGIPGFI-------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPRSEDPE I +E+  G+   +          +R +AI  AIE+    D++++AGKGHET
Sbjct: 412 NPRSEDPEFIISEVEGGVRAALKEGQRHEVIVDRRQAIYKAIEIAEPGDIVLIAGKGHET 471

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
             I+ +G      D ++ R+ 
Sbjct: 472 YQILKDGT-IHFDDREVARDA 491


>gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
 gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
          Length = 488

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG  F 
Sbjct: 1   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 53  ADAVKRGAVAIIAGKDTAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 107 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 167 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 227 KGAPAIIFADDQFSAQAVEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 287 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 465

Query: 480 KKMSVDC 486
                D 
Sbjct: 466 TLPFSDH 472


>gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 491

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 166/500 (33%), Positives = 250/500 (50%), Gaps = 27/500 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++      E I    I  +   +  I  +++DSR ++ G IF A+ G K+DG  +I 
Sbjct: 3   KLKEI-----VEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYIS 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AI++GA A+ +    +            P++ V      LS  +S  Y    +  NI+ 
Sbjct: 58  DAISKGASAVFLEGEVNNIY-------GVPLVRVREILDVLSKVSSYFYDFPSKYLNIIG 110

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++  + +    +  G+ S  IG     I   +  +  TTP P  L + L  + 
Sbjct: 111 VTGTNGKTTTTNLLYHYWKSKGIRSGLIGTIEYKIDDESYPSNFTTPQPQDLQEILRKMV 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            + V  +++E SSH L   R+DGI L    FTNL +DH+D+H+T + YF AK+++F  L 
Sbjct: 171 DREVKFLAMEISSHALALKRVDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIFNYLE 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                   +A      E   R      RV  V  +   ++LKK    +N   + I     
Sbjct: 231 D-----GGFAVINRDNEWTGRISLPNRRVFWVSLKNGDLYLKKHENTNNGMLLEIGTPLG 285

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D      L G+F +YN L A G+ I +G     + + L     V GR E +        +
Sbjct: 286 DLIIDTKLKGKFNIYNILFAVGVLIGLGEPLEDISKFLSTFKGVKGRLELIREGQ-NFDV 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + L  +L+ ++  T GR+IVVFGCGGDRD  KR  MG+I+  LADI IVT D
Sbjct: 345 IVDYAHTPDGLFNVLQTVKEFTKGRVIVVFGCGGDRDPTKRDKMGEISARLADIVIVTSD 404

Query: 419 NPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           NPR+EDP KI  +I  GI       +    NR EAI+ AIE+  + D +++AGKGHE   
Sbjct: 405 NPRTEDPLKIIRQIEEGIRRVGRSDYFVIENREEAIKKAIEIAGEGDSVLIAGKGHEDYQ 464

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ N  K    D ++ ++ +
Sbjct: 465 IIGN-TKIPFSDQEVAKKYI 483


>gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
 gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
          Length = 485

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 162/506 (32%), Positives = 246/506 (48%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+            I      + +I  V+ DSR I+ G +F+A+ G + DGH FI
Sbjct: 1   MKLSELLKNVKV-------IASQGNIDVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA AI+      L+D    +      + V +T +     A+  YG+      ++
Sbjct: 54  SKAIELGAVAIL------LEDMPEELNEKVTYVQVASTEEEAGKVATMFYGEPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ +  G     +    + I+        TTP PI L   L+ +
Sbjct: 108 GVTGTNGKTTIATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + QHR+ G++ + G FTNL RDH+DYH+T + Y NAK   F+  
Sbjct: 168 VEAGCEYAFMECSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + AI  ADD     +++                    + +        +V     G
Sbjct: 227 LPKTAFAITNADDKNGMIMVQNTKATVKTYSIKRMADFRAKILECHFEGMYLEVDGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     VL  +  L  V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPI-QSPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++LE +L  I  +  G+   +I V G GG RD+GKRP+M + A+  +D  I
Sbjct: 340 AVVDYAHTPDALENVLSAIHDVLDGKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  +++ G+        +   +R EAIRTA  M  K DV++VAGKGH
Sbjct: 400 LTSDNPRDEEPQAIIDDMLAGLDATQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    + NG K    D ++IREI G+
Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFGI 484


>gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 507

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 171/516 (33%), Positives = 253/516 (49%), Gaps = 38/516 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++     E ++             +  V+ DSR ++ G +FVA+ G KEDG  ++
Sbjct: 1   MKLTDVLAGCGAEQVSG------GRSSVDVTGVTQDSRRVKPGDLFVAVPGTKEDGAQYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+++GA A+V               S  P   V ++RK L+L A+  YG+  + +  L
Sbjct: 55  GEAVSRGAVAVVSEKPVG--------SSQVPFFKVSSSRKALALIAANFYGRPAQQLTLL 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I   +  S+  IG      +    +   TTP P+ L +    +
Sbjct: 107 GVTGTNGKTTTTYLLEAISAAAYASTGVIGTLGYKVNGKVVETANTTPDPLELHRIFREM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V +E SSH L Q R+ G+   A +FTNL RDH+DYH+  + YF AK RLF E 
Sbjct: 167 VDAGVETVVMEVSSHALVQERVHGLTFKAAAFTNLTRDHLDYHKDIEEYFQAKRRLFGEN 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE 296
           L     A++  DD Y+  +                QG   I    V       + T+   
Sbjct: 227 LSATGVAVVNGDDTYASRIYNELRGQKRMAWKFSRQGAGEISAADVSFSLQGIKATLKTP 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D      L G   + N L A G+ +  GI    V   +E++  +PGR E V     G 
Sbjct: 287 AGDIPVKSRLVGPHNLENILAATGVALGAGIARRDVQTGIERMGGLPGRMERVENYMPGP 346

Query: 357 RI--YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VDYAHT ++L+  L+  RT+  GR+IVVFGCGGDRD+GKRP+MG  A + AD+ +
Sbjct: 347 APAVLVDYAHTDDALKRALEASRTLAKGRVIVVFGCGGDRDKGKRPLMGTAAAEGADLVV 406

Query: 415 VTDDNPRSEDPEKIRAEI-----------------IHGIPGFIEKGNRIEAIRTAIEMLN 457
           VT DNPR+EDP +I  ++                   G  G++   +R  AI TA+ +  
Sbjct: 407 VTSDNPRTEDPAEIIEQVTPGLEKGGLRRISAGKAKSGEKGYLVDADRRAAIETAVGLAR 466

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + DV++VAGKGHET  IV   EK+   D +   + L
Sbjct: 467 EDDVVLVAGKGHETYQIVGT-EKRPFDDREAATKAL 501


>gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 483

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 211/500 (42%), Positives = 285/500 (57%), Gaps = 29/500 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL+ +D                +  I  V++DSR + +G +FVA+ G   DG  FIP
Sbjct: 5   RLSDLLRRDVA-------------ADPVITGVTADSRKVTSGSLFVALPGTAADGRAFIP 51

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA++QGA A++             +RS        + R+  +L A   YG  P   +AVT
Sbjct: 52  QALSQGAAAVLAPQDTPDGAAPLLVRSG-------DVRRAYALAARGFYGAQPATCVAVT 104

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA------QDNRLTTPSPIYLAKALS 175
           GT+GK+SVA+F +QI    G+ +  +G    ++             LT+P     A+ L+
Sbjct: 105 GTNGKTSVAAFCRQIWAALGIKAASMGTLGVVAQSGSITESLTPPGLTSPDAGDAARLLA 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L+  GVTH+++EASSHG+DQ RLDG+ L A +FTNL +DH+DYH    AY  AK+RLFE
Sbjct: 165 TLAEGGVTHLALEASSHGIDQRRLDGVTLKAAAFTNLTQDHLDYHGDMAAYRAAKLRLFE 224

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LLP+   A++ AD          +  +G  V+ VG +G+ + L +  A+   Q++ + V
Sbjct: 225 SLLPRGRTAVLNADSDAYNAFAAASIMSGLGVMGVGERGRDLSLIERRAVPEGQRLILDV 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G   D L PL G FQ  NALVAAGLCIA G D+A VL  LEK+    GR + V      
Sbjct: 285 RGDRHDVLLPLAGAFQASNALVAAGLCIAAGEDAARVLHALEKITGAAGRLQRVSGGRG- 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              YVDYAHT + LE +LK +R   +GR+IVVFG GGDRD+GKRP+MG IA  LAD+AIV
Sbjct: 344 -EAYVDYAHTPDGLETVLKALRPHATGRLIVVFGAGGDRDKGKRPLMGGIAGRLADVAIV 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA++  G P   E G+R  AIR A+ M+   DV+VVAGKGHE   IV
Sbjct: 403 TDDNPRSEDPAVIRAQVRAGCPSAREVGDRRAAIREAVAMMRDGDVVVVAGKGHEQGQIV 462

Query: 476 TNGEKKMSVDCDIIREILGL 495
             G      D   + E L +
Sbjct: 463 G-GTTHPFDDATELAEALRV 481


>gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum H04402 065]
          Length = 483

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 162/493 (32%), Positives = 267/493 (54%), Gaps = 17/493 (3%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    M+  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLEYSFMKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ +S  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G   + I +   ++  TTP  I L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+         +I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD+Y ++V+K+A   G ++     +   +  + +       +     + +       +
Sbjct: 234 NIDDSYGEKVLKKAL--GNKITYGLEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           + I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ + +    
Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD-KTIHF 470

Query: 484 VDCDIIREILGLI 496
            + ++I E++  I
Sbjct: 471 DEREVIEELIKEI 483


>gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
          Length = 490

 Score =  338 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 234/503 (46%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     E +         + +  I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLTKLLTYLMTEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA AIV      +         + P+++V  +++ LS+ +   YG+  + +  +
Sbjct: 55  QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+S    V +I +++G  +  IG     I       + TTP  + L K    +
Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
           + + V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF   
Sbjct: 166 NDEHVETAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225

Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  K   A++ ADD  S    +                     K++          
Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFERVTAAHILTYGIENDADVM--AKQIEISAQGTSFE 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            L G F VYN L AA   IA G+    +   LE+L  V GRFE V  N
Sbjct: 284 LVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHN 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ +AD 
Sbjct: 344 Q-PFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADE 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AGKGHE
Sbjct: 403 PIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGHE 462

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   + N E     D ++    +
Sbjct: 463 TYQQIGN-ETFDFDDAEVAGRAI 484


>gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
 gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
          Length = 486

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 203/500 (40%), Positives = 277/500 (55%), Gaps = 28/500 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL  + F               +  I  V++DSR + AGW+F A+ G K DG  F  
Sbjct: 4   RLSDLFNRPFAN-------------DSVIAGVTADSRKVTAGWLFAALPGTKVDGRDFAE 50

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+A+GA AI+                  P++  ++ R+  +L ++  +GK P   +AVT
Sbjct: 51  GAVAKGAAAILAPEGG-------LEGLGVPVVRSEDARRAYALASAAFWGKQPAMCVAVT 103

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKAL 174
           GT+GK+SVA F +QI  + G  +  +G                    LTTP    +A+ +
Sbjct: 104 GTNGKTSVAGFCRQIFAQLGHKAASMGTLGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMI 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L+  GVTH+++EASSHG+DQ R+DG+KL A +FTN  +DH+DYH + +AY  AK+RLF
Sbjct: 164 ARLADMGVTHLALEASSHGVDQRRVDGVKLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L P  + A++ AD          A  +G  V SVG  G+ + L         Q + + 
Sbjct: 224 DTLTPAGATAVLNADSEAFPTFASTAVTSGQSVFSVGEDGQGLRLISRTPTPAGQDLVVE 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G+ +D   PL G FQ  N LVAAGLC+A G D   VL+ LE L    GR + VG    
Sbjct: 284 AQGRTYDIRLPLAGAFQASNVLVAAGLCVAAGEDVGKVLKALENLEGAAGRLQRVGRGPH 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GG  YVDYAHT + L+ +L+ +R  T G++I VFG GGDRD+GKRP+MG I   LADIAI
Sbjct: 344 GGEAYVDYAHTPDGLQTVLEALRPHTRGKLIAVFGAGGDRDRGKRPLMGAIGAKLADIAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           VTDDNPRSEDP  IRA I+   PG  E G+R  AIR A+++L + DVLVVAGKGHE   I
Sbjct: 404 VTDDNPRSEDPASIRAAILEAAPGAREIGDRRAAIRAAVDLLAEGDVLVVAGKGHEQGQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V  G      D       L 
Sbjct: 464 VA-GVVHPFDDVAETLAALE 482


>gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 210/495 (42%), Positives = 297/495 (60%), Gaps = 24/495 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL                 +  E +I  ++SDSR +Q GW+F A+ G+  DG  F+
Sbjct: 1   MKLSDLFP-------------LAENGETEILGMTSDSRKVQPGWLFAALKGSVHDGGKFV 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA+AQGA AI+                + P ++ D  R+ L+L A R YG+ PE ++AV
Sbjct: 48  PQAVAQGAAAILSDGGIGA--------VSVPHVMADEPRRALALAAKRFYGEQPEFVVAV 99

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179
           TGT+GKSS   F +QI  R+G+ +  +G    I    + D   TTP P+ +++ +  L+ 
Sbjct: 100 TGTNGKSSTVDFARQIWSRAGIKAASMGTLGAIGPAGKVDIGHTTPDPVTVSETMKALAR 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QGVTH ++EASSHGL+QHRLDG+ L A +F NL +DH+DYH T +AY +AK+RLF +L P
Sbjct: 160 QGVTHCAMEASSHGLEQHRLDGVDLSAVAFLNLTQDHLDYHATMEAYLDAKVRLFRDLAP 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-K 298
           +  PAI+ AD  + + V + A  AG +V+S G++G+ + + ++      Q + +  +  +
Sbjct: 220 RGIPAIVNADSDHREAVEETARKAGLQVVSFGWRGEDLWIDELMPKATGQTLFLYWKDVE 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL GEFQ  NAL AA LC+++G++   V + L  L  V GR EFVG    G  +
Sbjct: 280 QKPIELPLIGEFQTLNALAAAALCLSLGMEFPAVADGLANLKPVKGRLEFVGKTETGAAV 339

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +VDYAHT + L+++L+ +R  T+GR+ V+FGCGGDRD  KRPIMG+IA   AD  IVTDD
Sbjct: 340 FVDYAHTPDGLDVLLRAVRPHTAGRLKVIFGCGGDRDAKKRPIMGEIASRQADDVIVTDD 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPRSEDP KIRA ++ G  G  E G+R EAI   +  L K D LV+AGKGHET  I+ + 
Sbjct: 400 NPRSEDPAKIRASVLGGATGAREIGDRAEAIHAVVRELKKGDTLVIAGKGHETGQIIGS- 458

Query: 479 EKKMSVDCDIIREIL 493
           +     D D     L
Sbjct: 459 QVLPFSDQDEALAAL 473


>gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens LL3]
          Length = 490

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 234/503 (46%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     E +         + +  I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLTKLLTYLMTEPVQN------DFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA AIV      +         + P+++V  +++ LS+ +   YG+  + +  +
Sbjct: 55  QKAAENGAAAIVAEKELDV---------DVPVIIVRRSQRALSVLSDAFYGQPTKQLQLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+S    V +I +++G  +  IG     I       + TTP  + L K    +
Sbjct: 106 GITGTNGKTSTTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
           + + V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF   
Sbjct: 166 NDEHVDTAIMEVSSHALSLGRVHGCDYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQL 225

Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  K   A++ ADD  S    +                     K++          
Sbjct: 226 GGSFNHEKPKRAVLNADDKASAYFERVTAAHILTYGIENDADVM--AKQIEISAQGTSFE 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            L G F VYN L AA   IA G+    +   LE+L  V GRFE V  N
Sbjct: 284 LVTPKGTKQITVSLVGRFNVYNVLAAAATAIAAGLPFDTITSALEELQGVRGRFELVNHN 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT +SLE +L   + +T G++ VV GCGGDRD+ KRP M +IA+ +AD 
Sbjct: 344 Q-PFPVVVDYAHTPDSLENVLNTCKDMTEGKLFVVVGCGGDRDKTKRPKMAEIAVRIADE 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I T DNPRSEDP  I  ++  G+ G  +    NR +AI  AI    K DV+++AGKGHE
Sbjct: 403 PIFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKGHE 462

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   + N E     D ++    +
Sbjct: 463 TYQQIGN-ETFDFDDAEVAGRAI 484


>gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
 gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
          Length = 485

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 162/503 (32%), Positives = 241/503 (47%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          L    M     +I E+  D+R +    +F+ I G   DGH F 
Sbjct: 1   MKLHTLLEA--------LPFVKMPAVNPEITELVQDNRLVTKNSLFICIKGYTVDGHKFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A  +GA AI+      +         + P+++V NT++ ++L A R YG+       +
Sbjct: 53  VDAAKRGAAAILAEKPVDV---------DIPVIIVRNTKRAMALLADRFYGQPSRKFRLV 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  +++I + +G ++  IG     I     + + TTP  + L K    +
Sbjct: 104 GITGTNGKTTTSHIIEKIYRDAGRTTGLIGTMYMKIGDETLETKNTTPDSLTLQKTFHEM 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
           +++GVT   +E SSH L + R+ G       FTNL +DH+DYH+T   Y  AK       
Sbjct: 164 NARGVTDCVMEVSSHSLVEGRVHGCDYDIAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQL 223

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  K   AI+ ADDA SKE  +                     + +         T
Sbjct: 224 GNSCPQDKPKYAILNADDAASKEFEQVTAVPVITYGIDHDADFM--AENIDMHARGTTFT 281

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    V++  E +  V GRFE V   
Sbjct: 282 LVTPFEKREVRLKLAGKFSVYNMLAAIAAGVVSGVPLDSVIKTAEAMEGVRGRFELV-NG 340

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK IR     +I VV GCGGDRD+ KRP+M +IA   A  
Sbjct: 341 GQDFSVIVDYAHTPDSLENVLKTIRQFARKKIFVVVGCGGDRDKTKRPVMAQIACKYAHY 400

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I T DNPRSEDP  I  E+  G+ G  +    +R EAI+TAI      DV+++AGKGHE
Sbjct: 401 PIFTSDNPRSEDPIAILREMEKGVEGEQYECIPDRREAIKTAIFRAEAGDVVLIAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+ N E     D ++  E++
Sbjct: 461 TYQIIGN-EVHHFDDREVALEMI 482


>gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 1; AltName:
           Full=Meso-A2pm-adding enzyme 1; AltName:
           Full=Meso-diaminopimelate-adding enzyme 1; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium
           acetobutylicum ATCC 824]
 gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum EA 2018]
          Length = 482

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 167/499 (33%), Positives = 254/499 (50%), Gaps = 27/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ +I     ELI             +I+ ++ DSR +    +F  I G   DGH FI
Sbjct: 1   MKLKKIIGDVKYELI-------CGDLNVEIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+ +GA+ IV +              N  ++ V++ RK +++  +  Y      +  +
Sbjct: 54  DKAVEKGADVIVCTK-------VPKKLPNCTVVKVEDGRKAMAVMGANFYDNPSHKLKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ + + SG     IG   + I     ++  TTP  + L K  S +
Sbjct: 107 GITGTNGKTTSTYMMKSMLESSGYKVGLIGTIANYIGDKKIESHRTTPESLELQKLFSDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               + +  +E SSH L   R+ GI    G FTNL +DH+D+H+T + Y+ AKM LF+  
Sbjct: 167 VHDKIDYCVMEVSSHSLYLDRVYGIVFEEGIFTNLTQDHLDFHKTFENYYKAKMILFKN- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 +II  DD Y + V K A N                 + +       +  +   G
Sbjct: 226 ---SKRSIINIDDKYGERVFKDAGNDKITYGLTEKADL--KAENLKMTSRGTEFDLCYRG 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
                   +PG++ VYNAL +   C+  GI    V + L KL  VPGR E V  N+    
Sbjct: 281 LREHVKINIPGKYNVYNALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDF 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT + LE +LK  R  T GR+I VFGCGGDRD+ KRPIMG+I   L+DIA++T
Sbjct: 341 DVVLDYAHTPDGLEKVLKASREFTKGRLISVFGCGGDRDKTKRPIMGEIGSKLSDIAVIT 400

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPRSE+PE+I  +I+ GI    ++   NR EAI+ A+ M  K DV+V+AGKGHE   I
Sbjct: 401 SDNPRSENPEEIIKDIVQGIKTDNYVIVENRKEAIKKAMLMAKKDDVIVLAGKGHENYQI 460

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + + +     + +I+ E +
Sbjct: 461 LGD-KTIHFDEKEIVSEFI 478


>gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 504

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 170/511 (33%), Positives = 259/511 (50%), Gaps = 36/511 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L+     E++           +  +  ++ DSR IQAG +FVA+ G + DG+ FIP+
Sbjct: 5   LNNLLRDV--EILQTAGPL-----DVPVTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPE 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+  GA A++  +    +  +        ++ V ++RK ++  A+  YG       ++ V
Sbjct: 58  AVRSGASAVITETVGFSECPA-------TVVRVSDSRKAMARMAANYYGHPCAGLKMIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++    ++ I +R G S   +G       + ++   +TTP  + L      +  
Sbjct: 111 TGTNGKTTTTLLLESILKRGGHSVGVLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMRE 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTHV +E SSH L Q R+      A  FTNL +DH+DYH T + YF AK  LF E L 
Sbjct: 171 DGVTHVVMEVSSHALAQGRVAECAFDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLR 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I  DD Y   ++++A   G    S G +    H+K      +  +  +      
Sbjct: 231 TGSVAVINGDDPYGARLVEKAGP-GAWSYSTGSEAARAHVKSARLTASGIEARLCGPDGS 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   PL G   +YN L A    +A+G+  A + E +  L  V GR + V +   G  + 
Sbjct: 290 MDIHSPLIGRLNLYNILAAVTASLAMGVPEAAIREGVAGLTSVDGRLQRVASPGTGFEVV 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT +++E  L  +R +T+GR++VVFGCGGDRD+GKRP+MGK+A  L D+ IVT DN
Sbjct: 350 VDYAHTPDAMEKSLGCLREMTAGRLLVVFGCGGDRDRGKRPLMGKVAGALGDLVIVTSDN 409

Query: 420 PRSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           PRSE PE+I  EI  G+                  G+I + +R  AI  A+      D +
Sbjct: 410 PRSEVPERIIDEIEPGVRASGLERILAAEPGNGARGYIVEVDRKSAIEKALAWARPGDTV 469

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + GKGHET  +V  GE     D  ++ + L
Sbjct: 470 FIGGKGHETYQLVG-GEVLPFDDRLVVAQYL 499


>gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
 gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
          Length = 484

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 169/501 (33%), Positives = 251/501 (50%), Gaps = 28/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+       +N             I  +  DSR +  G +FVAI G K DGH FI
Sbjct: 1   MELIKLLNDIEYYTVNGDVHL-------DIKNICYDSRKVTPGSLFVAIEGFKTDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAI  GA A+VV+    L D          ++ V+++R  L+  +   Y    +  +++
Sbjct: 54  RQAIDNGAVAVVVTRDVPLPD-------GVSVVKVEDSRLSLAALSRAFYDYPDKQLHLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   V+ I ++SG     IG   + I         TTP    L      +
Sbjct: 107 GVTGTNGKTSVTYMVKSILEQSGRKVGLIGTIQNMIGDVVLHTERTTPESSDLYALFRQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G+  V +E SSH L  +R+ G +   G FTNL  DH+D+H     YF AK++     
Sbjct: 167 ADGGIQDVVMEVSSHSLALNRVAGCRFDIGIFTNLTEDHLDFHSNMDDYFAAKLK----- 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + S  I    D      +K    +         +   +    + +        I + G
Sbjct: 222 LFQNSGLIATNVDDSYGVKLKDMFVSKTVYTYGIEREAHVTASNILSDAKGSTFDIDICG 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                +  +PG F VYNAL AA  C A+G+ +  + + L+ L  VPGRFE +GT++    
Sbjct: 282 DRRPVIINIPGRFSVYNALAAAAACYAMGVSADDISKGLQALKSVPGRFEVLGTDT-DFT 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT + LE ILK+++ I  GR+I +FGCGGDRD  KRPIMG+I    AD  I+T 
Sbjct: 341 VIIDYAHTPDGLENILKSVKDIAKGRVIALFGCGGDRDAAKRPIMGEIGGRYADFCILTS 400

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSEDP  I  +I  GI      +I   NR +AI+  ++   K D+L++AGKGHET  
Sbjct: 401 DNPRSEDPMAIIRQIEEGIRKTHCPYIVIENRRQAIKYGLQTARKDDILLLAGKGHETYQ 460

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ + +     + +++RE+L 
Sbjct: 461 ILKD-KTIHFDEREVVRELLE 480


>gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
 gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
          Length = 500

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 159/483 (32%), Positives = 230/483 (47%), Gaps = 22/483 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF-------S 83
           N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA  ++  +   +Q          
Sbjct: 21  NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRLAEKFAK 80

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                   +L V N  K LS  A   YG   E +  + +TGT+GK++ A    Q     G
Sbjct: 81  NHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLG 140

Query: 142 LSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             S  +G          Q+   TT S I + + L+     G    ++E SSHGL Q+R +
Sbjct: 141 GKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQYRAE 200

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +      FTNL RDH+DYH T + Y  AK RLF EL  K+      ADD   +E + + 
Sbjct: 201 ALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVIN--ADDEIGREWLAKL 258

Query: 261 HN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                          Q +++  K V        + +     + +    L G F V N L 
Sbjct: 259 PEAVAVSTDSQFQPQQARWVKAKAVQFTLQGATIEVESSWGNGELKSRLIGAFNVSNLLT 318

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILK 374
           A    +A+G D   ++E    L+ V GR E + +         + VDYAHT ++LE  L 
Sbjct: 319 AFAGLLALGYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALD 378

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R    G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDDNPR+EDP+ I  +I+ 
Sbjct: 379 AARLHCEGELWCVFGCGGDRDTGKRPLMARIAEQLADKVIVTDDNPRTEDPDVIFNDIMK 438

Query: 435 GIPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G        +   R  AI  AI     +DV+++AGKGHE   I+   +K    D +  ++
Sbjct: 439 GFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWAKK 497

Query: 492 ILG 494
            LG
Sbjct: 498 FLG 500


>gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1005

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 22/506 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            LQ++  ++  + I+ L +         I+ V+SDSR +  G +FVAI G   DG  FI 
Sbjct: 9   NLQEVQLEELLKEISSLELLGKAGFGGAISMVTSDSREVLPGSLFVAIKGYATDGGRFIR 68

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
            A+ +GA A++     S              + V + RK L+  A   YGK  +   I+ 
Sbjct: 69  SAVERGAAAVICEEFPSDPALP------CLYIKVADARKALAEAARIFYGKASDQLLIIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ A  +  +   +G+S+  IG               TTP    L      + 
Sbjct: 123 VTGTNGKTTTAKLITAMLNANGISAGYIGTNMCRIGELEIPLDRTTPEAHGLHALFRQML 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G     +E SSH L   R+ GI+  A  FTNL ++H+D+H+T   Y  AK +LF++ L
Sbjct: 183 EAGCKAAVMEVSSHALVLQRVYGIRFHAALFTNLTQEHLDFHETMHDYAEAKQQLFDQ-L 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-------QGKFIHLKKVCAIHNKQQV 291
             +  A++  DD Y++++  R  +      ++           +      +        +
Sbjct: 242 SPDGFAVLNIDDPYAEQMAARVADDKIYCCTMQRGLQPALSCSRLFAADLLQGTLASSTI 301

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +  +    LPG F V N L AA +   + + +  +   L  +  V GR E VG 
Sbjct: 302 VLHFPDESVEMQVKLPGNFNVMNVLEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGE 361

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           + +G   +VDYAHT ++L   L  +  +     R+IVVFGCGG+RD+ KR  MG+IA ++
Sbjct: 362 SRQGWMAFVDYAHTPDALFKALDALHGLKEDASRLIVVFGCGGNRDKEKRSEMGRIASEI 421

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  I+T DNPR EDPE+I   I  GI G       +R EAIR A+ ML   D+L+VAGK
Sbjct: 422 ADEVIITSDNPRDEDPEEILDAIERGITGVHYLRISDRAEAIRRAVLMLKAGDLLLVAGK 481

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE    +  G K    D  II+  +
Sbjct: 482 GHEKYQEIA-GHKYFFSDQAIIKTAM 506



 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 151/450 (33%), Gaps = 27/450 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +F+A+ G   DGH FI     +GA   +VS  +  +  S         
Sbjct: 563 VVIDSREVRGGELFIALKGENADGHCFIGTVFEKGASWAMVSRQWYEEQGSVDPPPGKGF 622

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V D+T   L   A+    +    +LA+ G++GK++    V  +           G  + 
Sbjct: 623 IVTDDTVAGLQQLATIYRHQFSIPVLAIGGSNGKTTTKEMVASVLGTGFRVHMSEGNRNN 682

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                            +A     ++  G   +     S                  TN+
Sbjct: 683 HLGVPLTLLQLRGD-TDIAVVEMGINHPGEMVLLAAIGS------------PTHALLTNI 729

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++         A++ LF+ L      A +  DD            +    ++   
Sbjct: 730 GHEHLEFLVDLDGVEAAEIPLFDYLRQSGGIAFVNMDDPRISAAASGMAGSVPYGMATRS 789

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +                   +              G+  V NA+ AA +    G+    +
Sbjct: 790 EHSCWARDISVNSAGALSFLLCSIAGSEPVTLNFTGKHNVMNAIAAATVGHYFGLSLCQI 849

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGC 390
            E LE+L   PG       ++ G RI  D Y   S+S+   +  +  +  +G+ + V G 
Sbjct: 850 REGLERLTPAPGWKRLEVLDACGVRILNDTYNANSDSMRKAIDALCDLPGAGKRVAVLGD 909

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               G   + +   +G      +   + T      E        +     G  E     E
Sbjct: 910 MLELGLAGEVEHQAIGNYLQQSSVDLLFT----FGESARLFGRAVPERYRGHFES---RE 962

Query: 448 AIRTAIEM-LNKQDVLVVAG-KGHETVHIV 475
           A+  A+   L + D+++  G +G +   +V
Sbjct: 963 ALLEALRTVLQEGDIVLFKGSRGMKLEQVV 992


>gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
 gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
          Length = 496

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 158/479 (32%), Positives = 230/479 (48%), Gaps = 18/479 (3%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF---SATIR 87
           N+++ DSR ++ G +FVA+ G++ DG  FI +AI QGA+ ++  +   +Q          
Sbjct: 21  NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAEADDDVQAVRLAEKFAN 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S   +L V N  K LS  A   YG   E +  + +TGT+GK++ A    Q     G  S 
Sbjct: 81  STACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGGKSA 140

Query: 146 QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G          Q+   TT S + + + L+     G    ++E SSHGL Q+R + +  
Sbjct: 141 VMGTIGNGLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAMEVSSHGLAQYRAEALDF 200

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-- 262
               FTNL RDH+DYH T + Y  AK RLF EL  K+      ADD   +E + +     
Sbjct: 201 DLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVIN--ADDEIGREWLAKLPEAV 258

Query: 263 -AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                      Q +++  K V        +       + +    L G F V N L A   
Sbjct: 259 AVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTAFAG 318

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRT 378
            +A+  D   ++E    L+ V GR E + +         + VDYAHT ++LE  L   R 
Sbjct: 319 LLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALDAARL 378

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G +  VFGCGGDRD GKRP+M +IA  LAD  IVTDDNPR+EDP+ I  +I+ G   
Sbjct: 379 HCEGELWCVFGCGGDRDTGKRPLMARIAEQLADRVIVTDDNPRTEDPDVIFNDIMKGFRK 438

Query: 439 FIEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                +   R  AI  AI     +DV+++AGKGHE   I+   +K    D +  ++ LG
Sbjct: 439 PKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKGHEDYQIIGT-KKYHFSDQEWAKKSLG 496


>gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
 gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
          Length = 483

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 252/499 (50%), Gaps = 27/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+     EL+           E+++N +  DSR +  G +FV + G + DGH + 
Sbjct: 1   MKLLDLLKGVDYELLEGTV-------EKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
            +AI  GA+ ++      ++           +L+V+  RK L+  ++  YG       ++
Sbjct: 54  NKAIEAGAKVVLCEKKIDIK------SEGVTVLLVNEGRKALATMSANYYGHPTKSLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ + +++G     +G   + I      +  TTP  + L K    +
Sbjct: 108 GVTGTNGKTTTVYLLKSMLEKAGKKVGLVGTIANYIGENKLKSERTTPESLELQKLFKDM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +  +E SSH L   R+ G +   G FTNL RDH+D+H++   Y+NAK +LFE  
Sbjct: 168 VDANCEYCVMEVSSHSLQLDRVYGCEFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFERS 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                      DD Y   V+K       + +           K    +  +  +   + G
Sbjct: 228 KASVINV----DDDYGYRVLKDVEKLENKEIKTYSINNNSDFKASDLMLKEGDIHFKING 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           ++F+ + P  GE+ VYNAL A G    +GI +  + + L  + V PGR E +G       
Sbjct: 284 EEFNSVLP--GEYNVYNALGAVGAMSILGISNESIRKGLLDVVV-PGRCERIGYKYDIPY 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +D+AHT + L+ IL+ ++  T  R+I V+GCGGDRD+ KR  +G+I  +LAD+AI+T
Sbjct: 341 DIIIDFAHTPDGLKNILETLKGFTKNRLIAVYGCGGDRDKVKRAELGRIGTELADLAIIT 400

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR EDP  I  EI+ GI    ++   NR+EAI+ A+ M  + DV+V+AGKGHE   I
Sbjct: 401 SDNPREEDPMAIIKEIVAGITKSNYLAIENRVEAIKLALGMAEEGDVVVLAGKGHENYQI 460

Query: 475 VTNGEKKMSVDCDIIREIL 493
              G      + +++ EIL
Sbjct: 461 TNEGV-IHFDEREVVDEIL 478


>gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia succiniciproducens MBEL55E]
 gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 488

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 247/476 (51%), Gaps = 13/476 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            K+N ++ DSR ++ G +FVAI G+  DG  FIPQAI+ GA A++     + +    + +
Sbjct: 17  IKLNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQ 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P++   +  + LS  A + Y    +++  + VTGT+GK++V+  + Q  Q  G    
Sbjct: 77  NQIPVISYYHLSEHLSDIADQFYKAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPA 136

Query: 146 QIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G          +    TT S I +  +L+    QG    ++E SSHGL QHR++ +  
Sbjct: 137 VMGTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-- 262
            AG FTNL RDH+DYH + + Y +AK RLF EL  ++      ADD    + ++   +  
Sbjct: 197 AAGIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQKIIN--ADDEIGVQWLRELPDAV 254

Query: 263 -AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              C       Q  ++ +  V        +T +           L G F V N ++    
Sbjct: 255 AVSCNPAYQPTQENWLKVTAVSFNSQGATITFNSSWGGAILTSRLIGAFNVSNLMLVLAT 314

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G     +L+ + +L  V GR E +    +   + VDYAHT ++LE  L+  R   +
Sbjct: 315 LLSLGYSLDELLKTVSQLTGVCGRMEMLHAAHKPT-VIVDYAHTPDALEKALQAARAHCT 373

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           GR+  VFGCGGDRD+GKRP+M ++A   AD  IVTDDNPR+ED  +I  +I+ G      
Sbjct: 374 GRLWCVFGCGGDRDRGKRPLMAQVAERFADYVIVTDDNPRTEDRHQIVQDIVAGFKRPES 433

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                +R +AIRTA++   + DV+++AGKGHE   I+ +  K    D + +++ LG
Sbjct: 434 VNIVYDREQAIRTAVQSAVENDVILIAGKGHEDYQIIGH-TKHHFSDQEAVKKYLG 488


>gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
 gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
          Length = 483

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 244/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+     E++N          + +I  V+ DSR I+AG +FVAI G   DGH FI
Sbjct: 1   MKLNELLKNV--EVLNTQGDV-----DVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AI  GA A++                    + V +T   +   A++ YG       ++
Sbjct: 54  PKAIELGATAVLCEK------LPEEQDPKVTFVQVASTESCVGEVATQFYGDPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +    + I   A     TTP PI L + L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNRLLAQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y +AK   F + 
Sbjct: 168 VDAGCEYAFMECSSHAIAQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKK-AFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K++ AI  ADD     +++          +         + +         +     G
Sbjct: 227 LEKDAFAITNADDKNGMVMVQNCKANVKTYSTRTMADFKAKIIECHFEGMYLDINGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  + +G     +L  +  L  V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAVMLGKKPEDILLIMSTLKSVNGRLEPIH-SPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +L  I  + +  G++I V G GG+RD+GKRPIM + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPIMAQEAVKQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDQKQMKKVVSIVDRREAIRTACMLAEKGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D ++++EI  
Sbjct: 460 DYQEIK-GVKHHFDDKEVVKEIFN 482


>gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 483

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 160/493 (32%), Positives = 267/493 (54%), Gaps = 17/493 (3%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   NLNLILKSLEYSFIKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ +S  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G   + I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+         +I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD+Y ++V+K+A   G ++     +   +  + +       +     + +       +
Sbjct: 234 NIDDSYGEKVLKKAL--GNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E LE +  VPGR E V  N   G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHT 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  +L+DIAI+T DNPR+EDP
Sbjct: 352 PDGLENILNTAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSNLSDIAIITSDNPRTEDP 411

Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           + I  +++ GI    +I    R +AIR A+E+  + DV+VVAGKGHE   I+ + +    
Sbjct: 412 KLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKGHEDYQILKD-KTIHF 470

Query: 484 VDCDIIREILGLI 496
            + ++I E++  I
Sbjct: 471 DEREVIEELIKEI 483


>gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
 gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
          Length = 490

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 236/487 (48%), Positives = 311/487 (63%), Gaps = 16/487 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+++    F EL       P +  E +I  ++SDSR +Q G++F A+ G K DG  F 
Sbjct: 3   MKLKEI--ALFNELA------PGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+     ++ D      +  P+L VD+ R  L++ A++ YGK PE ++AV
Sbjct: 55  ADAVKRGAVAIIAGKDMAIAD------AGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVASF +QI   +G  +  IG T   S    D   LTTP P+ L + L+ L+S
Sbjct: 109 TGTSGKTSVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELAS 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L AG+FTNLGRDH+DYH T   Y  AKMRLF  LLP
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PAII+ADD +S + ++ A  AGC V +VG +G FI LK+V     +Q V + +  + 
Sbjct: 229 KGAPAIIFADDQFSAQAIEAATLAGCDVKTVGRKGNFIALKRVEHERFRQHVEVRIGEEI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQV NALVAAGL +  G+ +A  +  L  L   PGR + VG    G   Y
Sbjct: 289 FEIELPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 349 VDYAHKPEALENVLTSVRPFTTGRVIVVFGCGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR+EI+    G  E G+R EAI TA+ M+   D LVVAGKGHE   IV N  
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKGHEEGQIVGN-I 467

Query: 480 KKMSVDC 486
                D 
Sbjct: 468 TLPFSDH 474


>gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 501

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 243/503 (48%), Gaps = 15/503 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+      + N + +      + +I  + ++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLHDLLRA----IPNVVEMPNHPALDAQITGICTNSHACQPGNLFIGMPGTRVDGGDFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILA 119
             AIA GA A ++S   + +           P ++           A+  +  +P   L 
Sbjct: 57  QSAIASGAVAALISPQAAQKHPPQPKPDAEPPCIICATDMTVACAQAAAAFYNYPTRQLQ 116

Query: 120 VTGTSGKSSVA---SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175
           + G +G +        ++ I  ++   +   G   +    F+Q    TTP P+ L + L 
Sbjct: 117 LVGVTGTNGKTTTTHLIEFILTQAQRPTALFGTLYARWQGFSQTAVHTTPFPVELQQQLH 176

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              + G     +E SSH L Q R+ G +     FTNL +DH+D+H+  + YF AK  LF 
Sbjct: 177 SAVAAGCELGVMEVSSHALAQGRVLGCEFDVAVFTNLTQDHLDFHRDMEDYFAAKALLFN 236

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   AII ADD Y K ++++         SV      ++   +       + T+  
Sbjct: 237 SD-YLHGKAIINADDPYGKRLIEKVGRDRTWSYSVQNPSADLYTSNLTYTLIGVKGTLHT 295

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSR 354
              D  F  PL G++ + N L A G  + +G+D   V+  L +   VPGR E V     +
Sbjct: 296 PVGDVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRMERVQLKPDQ 355

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKI  +LAD+A+
Sbjct: 356 DISVIVDYAHTPDSLENLLKAARPFIQGRMICVFGCGGDRDRTKRPKMGKIGAELADVAV 415

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDPE+I  +I+ GIP  +E     +R  AIRTAI      D +++AGKGHE 
Sbjct: 416 VTSDNPRTEDPERIIQDILEGIPATVEPIVMSDRATAIRTAILDAKPGDGVLIAGKGHED 475

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+   EK    D +  RE L 
Sbjct: 476 YQILGT-EKIHFDDREQAREALE 497


>gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
 gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
          Length = 494

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 157/504 (31%), Positives = 250/504 (49%), Gaps = 27/504 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    ++     ++ ++++DSR ++AG +F+A+ G   DGH ++ +A+  G
Sbjct: 2   KQLQDIVKTLQTPHIEGNTAVEVLDITADSRAVKAGSLFIALDGATVDGHNYVNKAVEAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS    +         +  ++ V++TRK +       +        ++ VTGT+G
Sbjct: 62  AVAVLVSKPVEVSG-------DVCVITVEDTRKAMMACVPYFFDYPANSMRMIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG    +    +     TTP  + L   L  +  +GVTH
Sbjct: 115 KTTTTHMIRHILKGQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTK 234

Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               AII  DD Y   V+++           G     ++   V       + T+S +G D
Sbjct: 235 SGKGAIINIDDEYGHRVIEKTTAPIITYSIDG--KGTLNAHDVEMTPKSSRYTVSYDGND 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G C+  GI    + + ++    VPGRFE +    +   + 
Sbjct: 293 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKAMKTFSAVPGRFELI-EEGQPFAVV 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    DI  VT DN
Sbjct: 352 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDIVYVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE  
Sbjct: 412 PRTEDPVQIVKDVEVGVKEGLREGSHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDY 471

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+ + +     D +  R  L  I
Sbjct: 472 QILKD-KTIHFDDREEARAALKEI 494


>gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
 gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
          Length = 486

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 160/505 (31%), Positives = 251/505 (49%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     +         +   ++ I  V  DSR ++ G +FVAI G + +GH +I
Sbjct: 1   MNLKTLLKNITIK-------TSLYVEDKDITSVCFDSRKVEKGSMFVAITGTQSNGHEYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QAI  GA AIV                +   +VV N+   L+L A+  YG   E   ++
Sbjct: 54  DQAIRSGANAIVCEQ------LPQQPLPDVSYIVVPNSHSALALIAANFYGNPSEKLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + Q+ +++G  +  +   +        +   TTP P+ L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLNHYLHLM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV +  +E SSHG+DQHR +G++   G FTNL RDH+DYH+T  AY + K R F+  
Sbjct: 168 VEQGVKYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A++  DD     +++             +     ++ +           + +  
Sbjct: 227 LPATAFALVNNDDKNGAFMLQNTKAQKKTYALKTHADYKAYIIESRFDG------LLLRI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L GEF  YN L        +GID    L  +  +  V GRF+    ++ G  
Sbjct: 281 NQHEVWTKLIGEFNAYNLLAVYATATLLGIDELETLTLISAIEPVAGRFQ-YAVSATGVI 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+
Sbjct: 340 TIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+PE I +E+  G+            +R +AI++  +   K D++++AGKGHE
Sbjct: 400 TSDNPRNEEPETILSEMEQGVQPQHFYKVQNITDRRQAIQSVCKNAQKGDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
           T   +  G +    D +I+RE L L
Sbjct: 460 TYQEIK-GVRHHFDDFEIVREYLEL 483


>gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 1313]
          Length = 485

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 247/501 (49%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+DL        +  L++  ++   + +I +++ DSR  +AG +FV I G K DGH F
Sbjct: 1   MKLKDL--------VKGLNVLEVEGDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           IPQAI  G  A +V     + D       +  ++ V +TR  L+  A   +G        
Sbjct: 53  IPQAIENGTRAFLVQKDVDVPD-------DATVVRVKDTRYALASVADIFFGHPSSKFNL 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT GK++    ++ I +  G     +G  + +          TTP    L +  S 
Sbjct: 106 VGITGTKGKTTTTYMIKSILEAFGQKVGLVGTIANMIGHEVLPTDRTTPESYDLQELFSE 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + V  V +E SSH L+ HR+   +   G FTNL RDH+D+H+T + Y NAK++LF  
Sbjct: 166 MVQKNVNSVVMEVSSHALELHRVSCCEYEIGVFTNLSRDHLDFHKTFENYLNAKIKLFGM 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                       +                           +    +    +    T+   
Sbjct: 226 CKK------GLINIDNEFGPKVVDSARCEVYTMGIDNKADLRAVDIVHHPDSVDFTVVSP 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               D    +PG+F VYNAL A G C  +G+    + + LEK+ V PGR E +    +  
Sbjct: 280 WFTGDVRVNIPGKFSVYNALAAIGTCALMGVPFEYIKKGLEKVTV-PGRAEVL-DIKKDY 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH+ +SLE IL  ++    GR++ VFGCGGDRD+ KRPIMG+I+  LAD  I+T
Sbjct: 338 TVMIDYAHSPDSLENILTTVKAYAPGRVVCVFGCGGDRDKTKRPIMGRISGQLADFTIIT 397

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDP+ I  +I  GI      +    +R EAI+ A+     +D++++AGKGHET 
Sbjct: 398 SDNPRTEDPDAIIRDIEEGIKQTGGLYTTITDRREAIKYALMNAKPKDIILLAGKGHETY 457

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ + +     + +++R+IL
Sbjct: 458 IILKD-KTIHFDEREVVRDIL 477


>gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 465

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 165/468 (35%), Positives = 260/468 (55%), Gaps = 23/468 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +++DSR ++ G++F AI G + DGH F+ +A+ +GA A+VV                  
Sbjct: 15  GITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVEAVQR--------- 65

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++ V+NTRK L+  A   YG+  E   ++ VTGT+GK++    ++ I ++SG  +  +G 
Sbjct: 66  VIKVENTRKTLAESAHLFYGRPSESLKVVGVTGTNGKTTTTYILESILKKSGSHAGLMGT 125

Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                      +  TTP PI   + L  +   G THV  E SSH LDQ+R+ G +  A  
Sbjct: 126 IQYRLGDKVFGSGRTTPDPITWHRTLREMVGSGATHVVAEVSSHALDQYRVWGTEFEAVI 185

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+  + YF AK RLF +   K   A++  DD Y K + +     G R L
Sbjct: 186 FTNLTQDHLDYHRDMEDYFRAKARLFFD--YKYRFAVVNTDDPYGKRLARDL---GDRAL 240

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +G+ + ++      +  ++ +S +GK F F   L G+FQ YN   A    + +GID
Sbjct: 241 TYGREGETLRIEDFKTGFDGSELRVSFKGKSFRFHSNLIGDFQAYNLSAALCYTLEVGID 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              + E L+ +HV PGRFE    + RG    VDYAHT ++++ +L+ +R +T  R+I VF
Sbjct: 301 PNAIQEALKDVHV-PGRFEV-HRSDRGFIAVVDYAHTPDAMDNVLRTMRRLTKNRVICVF 358

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNR 445
           G GG+RD+GKRP+MGK A   +D+ I+T DNPR E+PE+I  +I+ G+          +R
Sbjct: 359 GAGGNRDRGKRPLMGKSAEKWSDVVIITSDNPRDEEPERIIEDILKGVEDKGKVKVIPDR 418

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            EAI  A+ +  + D++ + GKGHE    +  G K    D +++++ L
Sbjct: 419 REAIAEALNIAKEGDIVAILGKGHEDYQEIK-GVKYPFSDSEVLKKFL 465


>gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 495

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 168/499 (33%), Positives = 264/499 (52%), Gaps = 26/499 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+DLI               ++  ++ I +++ +S++ + G  FV I G K DGH +I 
Sbjct: 11  KLKDLIENIDA------METNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYID 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AI  GA  +VV   +        +      +   NTRK L++ ++  +G   ++   + 
Sbjct: 65  EAIKNGARLVVVDEFFDTSKIEGKVD----YIKTSNTRKALAVMSANFFGHPSKDFLLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S    ++ I + +      IG   + I S   + + TTP    L K    + 
Sbjct: 121 VTGTNGKTSTTFMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMK 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           ++GV  V +E SSH L+  R+       G FTNL +DH+D+H T + YF AK++LF    
Sbjct: 181 NEGVDSVVMEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMSK 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A    DD++ K +++   +              +  K +    NK Q  +   GK
Sbjct: 241 KRVVNA----DDSWGKRIIEMYPDCVT---YAKDSDAQVCAKNIKLFVNKNQFEMWYNGK 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    +PG F +YN+L AA  CI++GI+   + + LE L  VPGRFE V +N R   I
Sbjct: 294 KEEITLNIPGLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNER-FTI 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT D
Sbjct: 353 VIDYAHTPDGLLNLMKTVDDVAEGRKVLLFGCGGDRDRTKRPIMGEIAGRMADFVIVTSD 412

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR+EDP KI A+I+ GI      ++   +R EAI+ AI+   + D +V+AGKGHET  I
Sbjct: 413 NPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKGHETYQI 472

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       +  I+++IL
Sbjct: 473 LKD-RTIPFDERRIVKDIL 490


>gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
          Length = 495

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 185/478 (38%), Positives = 266/478 (55%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   ++V ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALAGSGAALVVAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A     RV+  G+       L         Q +  S +G+      PL G FQ
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V   +     D +  
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484


>gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 489

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 163/500 (32%), Positives = 250/500 (50%), Gaps = 24/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++                  + E+ +  ++ DSR ++ G+IFVAI G K DGH FI
Sbjct: 1   MKLSEI-------CAVLEKYKCNSFTEKVVLGLTHDSRKVKEGYIFVAIKGYKSDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA A+V                N P +VV N R+ LSL +   YG     +  +
Sbjct: 54  SMAIEKGAIAVVAEKGVD-------YVINVPQIVVPNARRALSLLSEYFYGYPSSKMTIV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ + F + I + SG  +  IG       S       TTP  + +   LS +
Sbjct: 107 GITGTNGKTTTSFFTKSIIESSGNKAGLIGTIYYQLGSRIIPANETTPESVDIQSHLSDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  + +  +EASSH L QHRLDG+   +  FTNL  +H+DYH+  + Y   K++L   L
Sbjct: 167 LNNNIRYAVIEASSHALSQHRLDGVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLMRGL 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               S  +    D  S +   ++  A      +      +  + +    N  +  +    
Sbjct: 227 DENASAVL--NADHTSSKYFAKSTVAQIVWYGIKDTSAHVRAEIINMGVNGTRFLLISPW 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G   VYNAL AA     +G D  ++ + LE L+ VPGR E +        
Sbjct: 285 GKEVIHLKLTGNHNVYNALAAATTGFCLGFDMEIIRKGLESLNNVPGRLEKLDYGQ-DFH 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT ++L+++L+ +R I + RII+VFGCGGDRD+GKR  MG IA   +D+  +T+
Sbjct: 344 VLIDYAHTHDALQVVLETLRGIAARRIILVFGCGGDRDKGKRAKMGHIAEKYSDLFWITN 403

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSEDP  I  EI  GI     +  + +R  AI  A+    K DV+V+AGKGHE   I
Sbjct: 404 DNPRSEDPLNIIREIQRGIKRDSCYKVQLDRKVAIEEALLEAKKGDVVVIAGKGHERCQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + + +     DC++++++L 
Sbjct: 464 LKD-KSIPFDDCEVVKQVLS 482


>gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
 gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
          Length = 484

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 158/505 (31%), Positives = 249/505 (49%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P  I+          + +I  V+ DSR I+ G +F+A+ G + DGH FI
Sbjct: 1   MKLSELLKNVSPIAIHG-------NTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ QGA A++      L++   T+  N   + V +T +     A+  YG       ++
Sbjct: 54  GKAVEQGAAAVL------LENLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G  +  +    + I+        TTP PI L   L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G  +  +E SSH + Q R+ G+  + G FTNL RDH+DYH+T + Y NAK   F+  
Sbjct: 168 AAAGCEYAFMECSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + A+  ADD     +++    +               + +        ++     G
Sbjct: 227 LPKNAFALTNADDKNGMFMVQNTKASVKTYSIKRMADFRAKILECHFEGMYLEIDGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  + +G     +L  +  L  V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++L  +L  I  +     G +I V G GG RD+GKRP+M + A+  +D  I
Sbjct: 340 AVVDYAHTPDALANVLAAIHDVLDSKGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EAIRTA  M  K DV++VAGKGH
Sbjct: 400 LTSDNPRDEDPQAIIDDMLAGLDSTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    + NG K    D ++IREI G
Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFG 483


>gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
          Length = 492

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 145/506 (28%), Positives = 241/506 (47%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+    P       +        +I  +++DSR ++ G++FV + G   DGH F 
Sbjct: 1   MFLRDLLMPLLP-------VTVSGDDSMEITGLTADSRQVKPGYLFVCLTGYTVDGHTFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+  GA A++      +            I+ V +TR+ +++ A R++G   +   ++
Sbjct: 54  AQAVKNGAVAVLSEQDLDVPA---------TIVKVPDTRRAMAMLADRIFGSPTKEVKVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    + +I +     +  IG          ++ + TTP  I L ++   +
Sbjct: 105 GVTGTNGKTTTTHLIDKILRDQSKQTGLIGTIHMRIGDVTEEVKNTTPDAIDLQRSFRRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
                 +  +E SSH L+  R+ G ++    FTNL +DH+DYH+T + Y  AK       
Sbjct: 165 CDVNTDYAIIEVSSHALELGRVRGCEIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +   A++ ADD  S+            +     Q   +  K++         T
Sbjct: 225 GNGYDTDRLKTAVLNADDEASELYA--TVTPARVITYGIDQPADVRAKQIEITSKGTSFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            L G+F VYNAL A  + +A GI    +   LE++  V GRFE V   
Sbjct: 283 VESFAGSARLNLRLMGKFNVYNALAAIAVTLAEGIPLEAIKASLEEVAGVNGRFEAVDAG 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDY+HT +SLE  L  ++    G +  + GCGGDRD+ KRPIM +IA   AD+
Sbjct: 343 Q-PFAVLVDYSHTPDSLENALMTVKEFARGNVFCIVGCGGDRDRTKRPIMAQIATKYADL 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            ++T DNPRSE+P+ I  +++ G+       +    +R EAI  A+ +    DV+++AGK
Sbjct: 402 TVLTSDNPRSEEPQAILDDMLAGLSEVAPDRYTALTDRREAIAHAVSLAKPDDVILIAGK 461

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET  I+ + +     D ++ RE +
Sbjct: 462 GHETYQIIKD-QVLPFDDREVAREAI 486


>gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate
           ligase-like protein [polymorphum gilvum SL003B-26A1]
 gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 489

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 203/474 (42%), Positives = 289/474 (60%), Gaps = 3/474 (0%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       ++ +++DSR ++ G++F A+ G   DG  F+P+A+ QGA A++  +  +  
Sbjct: 12  LPHPPPTLSVSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAVAVLTDAQGAA- 70

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             + T+  + P+LV  + R+ L+L A+R YG+ P  ++AVTGTSGK+SVA FV+QI + +
Sbjct: 71  ALAGTMPDSVPVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVAHFVRQIFEHA 130

Query: 141 GLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G +S  +G   T++S  +    LTTP P+ L   L+ L+ +G+TH ++EASSHGL+QHRL
Sbjct: 131 GHASASLGTIGTVTSRGRAYGGLTTPDPVSLHAELARLADEGITHAALEASSHGLEQHRL 190

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG++L+AG+FTNLGRDH+DYH T++ Y  AK+RLF +LLP     ++   +  +  V+  
Sbjct: 191 DGVRLVAGAFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPGERCADRVLAV 250

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   G  + +VG +G  + L  +      Q++T+     D+    PL G FQV NAL+AA
Sbjct: 251 ARERGLHIFTVGERGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAGRFQVSNALIAA 310

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           GL I  G  +  VL  LE L   PGR E VG  + G  ++VDYAH  ++LE  L  +R  
Sbjct: 311 GLAITAGEATGAVLRALEDLEGAPGRLELVGRKANGALVFVDYAHKPDALENALAALRPF 370

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           T GR+ VV G GGDRD GKRP+MG  A   AD+ IVTDDNPRSEDP  IR  ++ G P  
Sbjct: 371 TCGRLFVVIGAGGDRDPGKRPLMGAAAARHADVVIVTDDNPRSEDPAAIRKAVLAGAPDA 430

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +E G+R  AI  A+  L   DVL VAGKGHET  IV +       D D +R  L
Sbjct: 431 LEIGDRGAAIAEAVARLEAGDVLCVAGKGHETGQIVGD-TVLPFSDHDAVRAAL 483


>gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 489

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 149/478 (31%), Positives = 241/478 (50%), Gaps = 13/478 (2%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  +  +  DSR +  G +FVA+ G++ D   F+PQAI+ GA A+++ +    +  S 
Sbjct: 13  LSDINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENEHLSI 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             ++N P++   +    LS  A + YG   E +  + VTGT+GK++V+  + Q     G 
Sbjct: 73  QWQNNVPVIRYYHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWATLLGH 132

Query: 143 SSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G          ++ + TT S + +   L+    +G    S+E SSHGL Q+R++ 
Sbjct: 133 KAAVMGTIGNGLLDQVKEAKNTTGSAVEVQANLADFVEKGADFASIEVSSHGLAQYRVEA 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K  +  FTNL RDH+DYH+T + Y  AK R F +L  +     + ADD      +    
Sbjct: 193 LKFKSAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLASELQI--LNADDPIGAAWLNELP 250

Query: 262 NAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           N+        +     ++++  ++   H    +       +     PL G F V N L+A
Sbjct: 251 NSIAVSCHPNFHATSKQWLYATEIRFTHEGAVIEFVSSWGNGTLHSPLIGAFNVSNLLLA 310

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + +A+G     ++  + +L  V GR E +    +   + VDYAHT ++LE  L + R 
Sbjct: 311 TAVLLALGYSFDDLIRTVSQLKGVNGRMELIKKAGKPT-VIVDYAHTPDALEKALNSARQ 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G++  +FGCGGDRD GKRP+M K A   AD+ IVT DNPR+EDP KI A+I+ G   
Sbjct: 370 HCKGKLWCIFGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEADILTGFSR 429

Query: 439 FI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                   +R EAI+  IE   + DV+V+AGKGHE   I+ + +     D ++    L
Sbjct: 430 MEDVGVIPDREEAIKFTIENAVEDDVIVIAGKGHENYQIIGD-KTLHFSDQEVAEAYL 486


>gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
 gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
          Length = 495

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 158/514 (30%), Positives = 247/514 (48%), Gaps = 37/514 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L      EL+  ++       + +I  + +DSR +  G +F+ + G+  DGH + 
Sbjct: 1   MRLSEL-----AELL--ITARLTGAGDTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           PQA A+GA A VV     L         + P L+V ++R  +++ A   YG      +++
Sbjct: 54  PQAAAKGAVAFVVERELEL---------DAPQLIVKDSRLAMAVLADHFYGHPSNALHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++QI   +  +S  IG      +  +     TTP  + L + LS +
Sbjct: 105 GVTGTNGKTTTTYLIEQILNDNDRNSGVIGTVEMRYAGKSFPMSGTTPEALQLQQYLSDM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231
             +G  + ++E SSH L+Q R+ G +     FTNL +DH+DYH T + Y  AK       
Sbjct: 165 RKEGTAYCAIEVSSHALEQGRVKGCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSRL 224

Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              +       + A++  DD  S++  K             +         +        
Sbjct: 225 GNEYAAKAEDRAYAVLNVDDPVSEQFAKLTAAEVITYGIDNHADV--RASNIRISAQGTT 282

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S      D    + G+F VYNAL A    +  G+    +   LE +  VPGR E V 
Sbjct: 283 FRVSTFRGKTDIALQMVGKFNVYNALAAISAALIEGVALERIKASLEAVPGVPGRVESVQ 342

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VDYAHT + LE +L+ ++ +   RII VFGCGGDRD+ KRPIMG IA   A
Sbjct: 343 AGQE-FAVVVDYAHTPDGLENVLRAVKELAPPRIICVFGCGGDRDRTKRPIMGSIAARYA 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  +VT DNPR+EDP+ I  +I  G+         +  K +R  AI  A+EM +  DV++
Sbjct: 402 DYVLVTSDNPRTEDPDLILKDIEAGLLKDGITSDRYELKVDRRAAIEKAVEMASPGDVVL 461

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           +AGKGHET  I+ +       D  + +E +  +L
Sbjct: 462 IAGKGHETYQIIGS-VTHPFDDRLVAKEAIRGLL 494


>gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
 gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
          Length = 467

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 177/456 (38%), Positives = 258/456 (56%), Gaps = 2/456 (0%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR ++ G++F A+ G K  G  FI  A+ QGA AI+  +  +    +    S+  ++V
Sbjct: 1   MDSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSLSDAALVV 60

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
            ++ R+ L+  A+  +G  PE ++AVTGT+GK+SVA+F +QI +R G  +  +G T    
Sbjct: 61  AEDPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGVEG 120

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           +++     TTP PI L + L+     GVTH ++EASSHGL Q RLDG+ L+A  FTN  +
Sbjct: 121 AYSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLVAAGFTNFTQ 180

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ- 273
           DH+DYH +   YF AK  LF  +LP++  A+I  +D+   E+   A   G  +++VG + 
Sbjct: 181 DHLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERGQDLITVGREV 240

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           G  + LK        Q +    E +       L G FQ  N L+AAGL I  G D+  V 
Sbjct: 241 GADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGADAERVF 300

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           E L  +  V GR +   T   G  ++VDYAHT +++   +K +R    GR+I + G GGD
Sbjct: 301 ETLPGMKTVRGRMQLAATRDTGATVFVDYAHTPDAVATAIKALRPHVMGRLIAIVGAGGD 360

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           RD+ KRP+MG+ A   AD+ IVTDDNPRSEDP  IRA ++ G PG  E G+R EAI   +
Sbjct: 361 RDRAKRPLMGQAAGTYADLVIVTDDNPRSEDPASIRAAVMQGCPGASEVGDRAEAILRGV 420

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + L   D L++ GKGHET  +V   +     D +  
Sbjct: 421 DALGPGDALLICGKGHETGQVVGE-DVLPFDDAEQA 455


>gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 494

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 248/504 (49%), Gaps = 27/504 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    +      +I ++++DSR ++AG +F+A+ G   DGH ++ +AI  G
Sbjct: 2   KQLQDIVKTLQAPQVTGNTAVEILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS    +         +  ++ V++TR  +       +        ++ VTGT+G
Sbjct: 62  AVAVLVSKPVEVSG-------DICVITVEDTRTAMMACVPYFFDYPANSMRMIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG    +          TTP  + L   L  +  +GVTH
Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDATYPIHNTTPDVVDLQHILHQMVEEGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTK 234

Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               AII  DDAY   V+++           G     ++   V       + T+S +G D
Sbjct: 235 SGKGAIINIDDAYGHRVVEKTKAPIITYSIDG--NGTLNAHDVDMTPKSSRYTVSYDGHD 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G C+  GI    + + L+    VPGRFE +    +   + 
Sbjct: 293 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DN
Sbjct: 352 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE  
Sbjct: 412 PRTEDPVQIVKDVEAGVKEGLREGSYYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDY 471

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+ + +     D +  R  L  I
Sbjct: 472 QILKD-KTIHFDDREEARAALKEI 494


>gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc punctiforme PCC 73102]
 gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC
           73102]
          Length = 500

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 163/500 (32%), Positives = 257/500 (51%), Gaps = 15/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     + + QL+  P    + ++  + ++S     G +F+ + G + DG  F 
Sbjct: 1   MKLRELLTAV--DSVEQLASHPT-LEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFW 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AIA GA A +VS   + ++      +   ++   N  +  +  AS  YG   + +  +
Sbjct: 58  QSAIASGAVAAIVSPEAAQKNPPT---NEAVVISASNITQACAQIASAFYGYPGQKLKLV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ +  ++ L++  +G      + F Q    TTP  + L + L+  
Sbjct: 115 GVTGTNGKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G     +E SSH L Q R+ G +     F+NL +DH+DYH+  + YF AK  LF   
Sbjct: 175 VNAGSEFGVMEVSSHALAQGRVLGCQFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPD 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII ADD+Y K ++    +      SV      + +  +    N     +    
Sbjct: 235 -YLKGRAIINADDSYGKRLIASLDSERVWSYSVNDNSADLWMSDLSYEPNGVSGILHTPK 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356
            D  F  PL G++ + N L A G  + +G+D  LV   + +   VPGR E V  N  +  
Sbjct: 294 GDVAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDI 353

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRPIMG+IA +LAD+A+VT
Sbjct: 354 SVIVDYAHTPDSLENLLKAARPFIPGKVICVFGCGGDRDRTKRPIMGRIAAELADVAVVT 413

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+PE+I  +++ GI   +      +R  AIRTAI      D +++AGKGHE   
Sbjct: 414 SDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQAQPGDGVLLAGKGHEDYQ 473

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R+ L
Sbjct: 474 ILGT-EKIHFDDREHARDAL 492


>gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
 gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
          Length = 483

 Score =  336 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 195/501 (38%), Positives = 272/501 (54%), Gaps = 29/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +                    + +   ++ DSR +  G++F A++G   DG  FI
Sbjct: 1   MKLSQIF---------------DNAPDWEFTGLTCDSRKVAPGFVFAALLGTVSDGRDFI 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A++                  P + V   R   +  A+  Y K PE ++AV
Sbjct: 46  QAAIDNGAIAVLTD--------ERDGEWEIPAIKVAEPRLAFAKAAAAFYHKQPEVMVAV 97

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGT+GKSS   F++QI    G  S  +G    +      +   TTP P+ +   L+ L++
Sbjct: 98  TGTNGKSSTVDFLRQIWTELGHVSASVGTLGAVGPSGAVELGHTTPDPVAVQSTLAILAN 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGL Q+R+ G++L AG F NL +DH+DYH+  + YF AKM+LF ELLP
Sbjct: 158 EGVTHCAMEASSHGLAQYRMHGVQLAAGGFLNLSQDHLDYHKDFEDYFAAKMKLFSELLP 217

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--- 296
           + +PAII AD     + +  A  A  +  +VG++G  + + ++   +  Q++ +  E   
Sbjct: 218 EGAPAIINADSDMKDKALAIATAANLKPFTVGWRGDHLWIDEISPRNTGQKLQLQWETPE 277

Query: 297 -GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K+     PL GEFQ  NAL AAG+ +++G D   V   +EKL  V GR E V     G
Sbjct: 278 GDKETIVNLPLIGEFQALNALAAAGIALSLGADPMAVFAAMEKLKGVKGRLELVAETQNG 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I+VD+AHT + L+ +L+  R   +GR+I VFGCGGDRD GKRPIMG+IA   AD  IV
Sbjct: 338 AGIFVDFAHTPDGLDTLLRAARPHAAGRVICVFGCGGDRDAGKRPIMGEIAAKYADEVIV 397

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+ G P   E   R  AI+  I  L K DVL++AGKGHET  I+
Sbjct: 398 TDDNPRSEDPASIRAAIMAGAPNATEIDGREAAIKEGISRLKKGDVLMIAGKGHETGQII 457

Query: 476 TNGEKKMSVDCDIIREILGLI 496
             GE     D +     L  I
Sbjct: 458 K-GETFPFSDHEAALTALAEI 477


>gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
 gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 489

 Score =  336 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 230/479 (48%), Gaps = 19/479 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  I  + +DSR IQ G +F+A  G + DG  +I +A+ + A A+     Y    ++ +
Sbjct: 19  ADVLIKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAAAVF----YEANQYNPS 74

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I++  P++  +N +  +   A+R Y      +  + +TGT+GK+S A F+ Q  Q  G+ 
Sbjct: 75  IQTKVPLIPFENLQHRIGEIAARFYDDPSCEMEIIGITGTNGKTSCAQFIAQALQSQGIR 134

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG               TTP PI L +A + +  QG   +++E SSH L Q R++G+
Sbjct: 135 CGVIGTLGYGFLGSLHKTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVSSHALHQRRVEGV 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FT L RDH+DYH   + Y  AK  LF++            DDA  K ++    +
Sbjct: 195 QFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQPGLHTGVVNC--DDALGKRIIAHYRH 252

Query: 263 A-----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                          +   +    +  +     V +     +  F  PL G F + N L 
Sbjct: 253 QLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLFGRFNISNLLA 312

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              +     I     L  L +L  VPGR + V +  +   I VDYAHT ++LE  L  +R
Sbjct: 313 VLSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQPQ-IIVDYAHTPDALEKALTALR 371

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               GR+I VFGCGGDRD+GKRP M  +A   AD  I+T+DNPR+E P  I  +I  G  
Sbjct: 372 EHCQGRLICVFGCGGDRDRGKRPQMAAVAEQHADQIILTNDNPRTESPLTIIQDIQAGFK 431

Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + K +R EAIR A++M    D++++AGKGHET   + + +     D +  ++ L
Sbjct: 432 NKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAGKGHETTQTIAD-QVLPFNDVEEAKKAL 489


>gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
 gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
          Length = 493

 Score =  336 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 181/478 (37%), Positives = 262/478 (54%), Gaps = 2/478 (0%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  L +     +E +I  ++ DSR ++ G++F A+ G K  G  FI  A+  GA A++
Sbjct: 6   KTLADLGLTAKAGQEARITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGASAVL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +         S+  ++V  + R+ L+  A+  +G  PE ++ VTGT+GK+SVA+F
Sbjct: 66  TDVEGAKIADDVLAGSSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTSVATF 125

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    ++   +  TTP PI L + L+  ++ GVTH ++EASSH
Sbjct: 126 TRQIWSALGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAMEASSH 185

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RLDG++L A  FTN  +DH+DYH T  AYF AK  LF  +LP +  A+I  +D  
Sbjct: 186 GLDQRRLDGVRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINLNDPR 245

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A   G R++SVG+       +         Q V    +G+       L G FQ
Sbjct: 246 GAEIALLAAERGQRLISVGHGKVCDLQIAGQRFDATGQDVRYLWQGQPHQVRLNLIGGFQ 305

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N  +AAGL I  G  +  V   L +L  V GR +   T   G  ++VDYAHT +++  
Sbjct: 306 AENVALAAGLAIGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGASVFVDYAHTPDAIAT 365

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD  KRP+MG+ A + AD+  VTDDNPRSEDP  IRA 
Sbjct: 366 ALKALRPHVMGRIVVVFGAGGDRDTTKRPLMGQAAREHADVLYVTDDNPRSEDPATIRAA 425

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L+VAGKGHE+  ++  G+     D +  
Sbjct: 426 IMAACPEANEVGDRAEAILRGVDALGPGDALLVAGKGHESGQVIK-GDVYPFDDVEQA 482


>gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 496

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 163/507 (32%), Positives = 254/507 (50%), Gaps = 28/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L             I    +   ++  V +D+R +  G +FVAI GNK DGH FI
Sbjct: 1   MKLQHLFSIL-------PGIPENAFSHIEVTGVFNDARLVVPGSVFVAIRGNKLDGHTFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P A+A+GA A+VV     + +    +     ++ V N+R+ L + ASR Y    +    +
Sbjct: 54  PDAVAKGAAALVVEDKAKIPEGYEGV-----VVQVPNSREVLDVLASRFYWDPGQELFCV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV    + I     + +  IG  +         + +TTP P++L K L   
Sbjct: 109 GVTGTNGKTSVTYMTEAILNHGKIPTGVIGTVNHHLGDQVWPSEMTTPDPVFLQKRLREF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G   V++E SSH LDQ R+D +      FTNL RDH+DYH T ++Y  AK RLF +L
Sbjct: 169 RSAGALAVAMEVSSHALDQRRVDSVPFNTVIFTNLTRDHLDYHNTMESYLEAKQRLFTDL 228

Query: 238 LPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L K      +A    + +  +R        + + G +   I  + +          +   
Sbjct: 229 LWKTHKRPCFAIVNTADKFGRRLRVADPAVLWTYGEKDSDIRYEILKMDFALTHFKVWTP 288

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +   P+ G   V NAL A G  ++ G+   + +E L++   VPGR + V  N +  
Sbjct: 289 VGEGEVRLPMSGTHNVMNALAALGAGLSAGLPLNICIEALDRFTGVPGRLQSVP-NDKNL 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            ++VDYAHT ++LE +L  +  +        RI  +FGCGGDRD+GKRP+M ++AL  +D
Sbjct: 348 SVFVDYAHTPDALENVLMALTKVRENLQSQSRIWTIFGCGGDRDKGKRPLMAEMALKYSD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             ++T DNPR+EDP+ I  +I+ G+            +R +AI   ++   + DV+++AG
Sbjct: 408 EVVITSDNPRTEDPQTIIQDILAGVGGANKAKATTVVDRKDAITQTLKRAQEGDVILIAG 467

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE   I+   +K    D  +  E L
Sbjct: 468 KGHEDYQIIGT-QKFPFSDVKVAEEAL 493


>gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga ochracea DSM 7271]
 gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea
           DSM 7271]
          Length = 486

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 159/505 (31%), Positives = 248/505 (49%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     +         +   ++ I  V  DSR  + G +FVAI G + +GH +I
Sbjct: 1   MNLKTLLKNITIK-------TSLYVEDKDITSVCFDSRKAEKGSMFVAITGTQSNGHEYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            QAI  GA AIV                    +VV N+   L+L A+  YG   E ++  
Sbjct: 54  DQAIRSGATAIVCEQ------LPQQPLPGVSYIVVPNSHSALALIAANFYGNPSEKLILV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + Q+ +++G  +  +   +        +   TTP P+ L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVYVDDQCFEATHTTPDPLQLNHYLHLM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV +  +E SSHG+DQHR +G++   G FTNL RDH+DYH+T  AY + K R F+  
Sbjct: 168 VEQGVKYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A++  DD     +++             +     ++ +           + +  
Sbjct: 227 LPATAFALVNNDDKNGAFMLQNTKAQKKTYALKTHADYKAYIIESRFDG------LLLRI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L GEF  YN L        + ID    L  +  +  V GRF+    ++ G  
Sbjct: 281 NQHEVWTKLIGEFNAYNLLAVYATATLLSIDEIEALTLISAIEPVAGRFQ-YAVSATGVI 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+
Sbjct: 340 TIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+PE I +E+  G+            +R +AI++  +   K D++++AGKGHE
Sbjct: 400 TSDNPRNEEPETILSEMQQGVQPQYFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
           T   +  G +    D +I+RE L L
Sbjct: 460 TYQEIK-GVRHHFDDFEIVREYLEL 483


>gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 495

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 184/478 (38%), Positives = 266/478 (55%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A     RV+  G+       L         Q +  S +G+      PL G FQ
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V   +     D +  
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484


>gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 497

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 153/505 (30%), Positives = 248/505 (49%), Gaps = 26/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E++    I     +E  +  ++++S+ ++  + F AI G   DGH FI
Sbjct: 1   MKL-------LKEILTDEKII-YGNQETAVEGITNNSKKVEKNYAFFAIKGTSVDGHNFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA  I +     ++        N  +++ DN RK L+L ++R Y    E   ++
Sbjct: 53  DEAIKNGASVIFIEDEKYIESLKG---KNITVVLTDNGRKSLALASNRFYDNPSEKLKVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
           A+TGT+GK++ ++ + Q  + +G     IG  +         +  TTP P+   K L  +
Sbjct: 110 AITGTNGKTTTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V  E SSH  DQ+R+   K   G FTNL +DH+DYHQT + YF AK R+FE++
Sbjct: 170 KDKGADVVVAEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQI 229

Query: 238 LPKESPAIIYADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 AI   +            +         ++++ G   +   +        + + 
Sbjct: 230 DKFNKEAIYSINVDDEHGRRILDYLKNHLKVNDDKIITYGKTSEDFKILDYRLSLFETEF 289

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   +         L G F +YN        I  G D   + E    L  + GRFE    
Sbjct: 290 SYKYKDTLSKIKTKLRGVFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKGRFEV--I 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +G  + +DYAHT ++LE ILK++  I   RII VFG GG+RD+ KRP+MG+ A  L+D
Sbjct: 348 EGQGFIVVIDYAHTPDALENILKSLNEIKENRIITVFGAGGNRDKTKRPLMGETAESLSD 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + I+T DNPR+EDP  I  +I+ GI      I   +R +AI  AI +  ++D++++AGKG
Sbjct: 408 VVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAGKG 467

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I+ + +     D ++++EI+
Sbjct: 468 HENYQIIGD-KILHFDDAEVVKEII 491


>gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 495

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 184/478 (38%), Positives = 266/478 (55%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + LS  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLSEAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A     RV+  G+       L         Q +  S +G+      PL G FQ
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD+GKRP+MG+ A + AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAAEHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V   +     D +  
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484


>gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
 gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
          Length = 484

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 158/505 (31%), Positives = 249/505 (49%), Gaps = 33/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P  I+          + +I  V+ DSR I+ G +F+A+ G + DGH FI
Sbjct: 1   MKLSELLRNISPIAIHG-------NTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ QGA A++      L++   T+  N   + V +T +     A+  YG       ++
Sbjct: 54  GKAVEQGAAAVL------LENLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G  +  +    + I+        TTP PI L   L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G  +  +E SSH + Q R+ G+  + G FTNL RDH+DYH+T + Y NAK   F+  
Sbjct: 168 AAAGCEYAFMECSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + A+  ADD     +++    +               + +        ++     G
Sbjct: 227 LPKNAFALTNADDKNGMFMVQNTKASVKTYSIKRMADFRAKILECHFEGMYLEIDGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  + +G     +L  +  L  V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++L  +L  I  +     G +I V G GG RD+GKRP+M + A+  +D  I
Sbjct: 340 AVVDYAHTPDALANVLAAIHDVLDSKGGHVITVCGAGGHRDKGKRPLMAQEAVRQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EAIRTA  M  K DV++VAGKGH
Sbjct: 400 LTSDNPRDEDPQAIIDDMLAGLDFTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    + NG K    D ++IREI G
Sbjct: 460 ENYQEI-NGVKHHFDDHEVIREIFG 483


>gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
 gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
          Length = 500

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 161/510 (31%), Positives = 253/510 (49%), Gaps = 36/510 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQDL+                +    ++ +V++DSR    G +F+A+ G+  DGH F+
Sbjct: 1   MRLQDLVSALLH------VRVVGEISAVEVTDVTADSRTAGPGSLFIALRGHTVDGHAFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA A VV                 P +VV +TR+  ++ A+  +        ++
Sbjct: 55  DEARRSGAVAAVVEDCLDTP---------LPQIVVPDTRRAAAVLAAVFFRHPSRAMRVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   +  + +  G  +  IG   T     +     TTP  + L +  + +
Sbjct: 106 GVTGTNGKTTVTHLIDHLLRAGGARTGLIGTIQTRIGDRSSGAVNTTPEAVELQRLFAQM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231
              GV+H  +E SSH L+  R+ G +     FTNL +DH+D+H + +AY  AK       
Sbjct: 166 RDAGVSHAVMEVSSHALELDRVAGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFARL 225

Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              + +    ++ A++  DD   K + ++             +   +  ++V       +
Sbjct: 226 GNEYGDTRADQAFAVVNLDDPVGKWMARQTTAQTVTYGV--DRPADLRAREVEVDTRGVR 283

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +EG+      PLPG F VYN L A G     G+D   + + L ++  VPGR E V 
Sbjct: 284 FVAEIEGRRTRVHVPLPGRFSVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMERVD 343

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VDYAHT +SL+ +L+ +R + SGR+IVVFGCGGDRD+ KRP+MG+IA   A
Sbjct: 344 AGQ-PFGVVVDYAHTPDSLDNVLQALREVASGRLIVVFGCGGDRDRTKRPLMGRIAYTRA 402

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D AI+T DNPR+EDPE+I  +I  G+         +    +R EAIR AI +  ++DV++
Sbjct: 403 DYAILTSDNPRTEDPERILDDIEAGLREIGADTSRYERISDRTEAIRRAIHLAGEKDVVL 462

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+    K    D    R+ L
Sbjct: 463 IAGKGHETYQIIGR-RKFPFDDRVEARKAL 491


>gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 480

 Score =  335 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 200/475 (42%), Positives = 278/475 (58%), Gaps = 3/475 (0%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       I  +++DSR +Q G++F A  G+  DG  F+P+A+   A A++ ++  + +
Sbjct: 3   LPDTADGLSIEGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAVAVLCATN-AAE 61

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A +     +L  D  R   S  A+R YG+ P+ I+AVTGT+GK+SVA FV+QI Q +
Sbjct: 62  AVRALVPPTVAVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSVAHFVRQIFQAA 121

Query: 141 GLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +  +G    I    +    LTTP P+ L K L+ L+++G+ + ++EASSHGLDQ+RL
Sbjct: 122 GHPAASLGTLGIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALEASSHGLDQYRL 181

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG++L A +FTNLGRDH+DYH T + Y  AK+RLF ELLP     ++   + Y+  V+  
Sbjct: 182 DGVRLTAAAFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDPGEKYTDRVLAI 241

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   G  V +VG  GK + L  +      Q +T+     ++    PL G FQV NAL+AA
Sbjct: 242 AEERGLPVFTVGETGKDLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIGRFQVSNALIAA 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           GL I  GID+   L  LE L   PGR E  GT   GG ++VDYAH  ++L+  L  ++  
Sbjct: 302 GLAITAGIDAGAALRALENLKGAPGRLELAGTTPAGGMVFVDYAHKPDALDKALAALKPF 361

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G + VV G GGDRD GKRP+MG+ A   AD+ IVTDDNPRSEDP  IR  ++ G PG 
Sbjct: 362 AEGSLSVVVGAGGDRDPGKRPLMGEAAARHADLVIVTDDNPRSEDPATIRKAVLAGAPGG 421

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +E G+R EAI   I  L   D+L VAGKGHET  IV +       D D +R+ L 
Sbjct: 422 LEIGDRAEAIAEGIRRLKSGDILCVAGKGHETGQIVGD-TVIPFSDHDSVRQALN 475


>gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
 gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
          Length = 482

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 161/494 (32%), Positives = 241/494 (48%), Gaps = 25/494 (5%)

Query: 10  DFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            F ELI  +    +       I  V  DSR ++ G +FVAI G + DGH +IP+AI  GA
Sbjct: 2   TFSELIKGIKTSAVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIELGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            AI+   A          + N    VV +T   +   A+R +G   +   ++ VTGT+GK
Sbjct: 62  AAILCEEA------PQQPQPNVTYAVVKSTEDEVGKVATRFFGDPSKHLKLVGVTGTNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++VA+ +  + ++ G     +    + I         TTP PI L + L+ + + G  +V
Sbjct: 116 TTVATLLYNLFRKLGHKCGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCEYV 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH + Q R+ G+    G FTNL RDH+DYH+T + Y NAK   F + LPK + AI
Sbjct: 176 FMECSSHAIAQKRIGGLTFTGGIFTNLTRDHLDYHKTFENYRNAKK-SFFDGLPKSAFAI 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             ADD     +++    +               + +         +     G  F   F 
Sbjct: 235 TNADDKNGMVMVQNTKASVKTYSIQSMADFKARIIECHFQGMYLAIDGQEVGVQFTGKFN 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +       N L   G    +G      L  +  LH V GR + +  +  G    VDYAHT
Sbjct: 295 VS------NLLAVYGAARMLGKQREETLIAMSTLHTVNGRMDTL-QSPEGFTAIVDYAHT 347

Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            ++L+ +L  I  +   G II V G GG+RD+GKRP+M K A+ L+D  I+T DNPR ED
Sbjct: 348 PDALKNVLLAIHEVDGKGHIITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFED 407

Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P+ I  +++ G+        +   +R EAIRTA  +  KQDV++VAGKGHET   +  G 
Sbjct: 408 PQDIINDMLAGLDAQDQKKVLTIADRKEAIRTACMLAQKQDVILVAGKGHETYQEIK-GV 466

Query: 480 KKMSVDCDIIREIL 493
           K    D +++R+I 
Sbjct: 467 KHHFDDKEVLRDIF 480


>gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
 gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
          Length = 496

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 161/500 (32%), Positives = 249/500 (49%), Gaps = 19/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+            +      + +I  + ++S     G +F+ + G + DG  F 
Sbjct: 1   MKLRELLAAVD-------GVDYQGLADAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFW 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AIA GA A +VS A   ++          +L   +  +  +  A+  YG   + +  +
Sbjct: 54  QSAIASGALAAIVSPAALQKNPPTGEAV---VLSAADMTQACAQLAAAFYGYPGQKLKLV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ +  ++ LS+  +G        F Q    TTP  + L + L+  
Sbjct: 111 GVTGTNGKTTTTHLIEFLLTKANLSTALMGTLYTRWPGFEQTAVHTTPFAVDLQQQLAEA 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G    ++E SSH L Q R+ G +     F+NL +DH+DYH   + YF AK  LF   
Sbjct: 171 VNAGCEFGAMEVSSHALAQGRVLGCEFEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPE 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII ADD Y + ++    +      SV      + +  +    N     +    
Sbjct: 231 -YLKGRAIINADDDYGQRLIASLSSERVWSYSVNNHSADLWMSDLSYEPNGVSGMLHTPK 289

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
            +  F  PL G++ + N L A G  + +G+D  LV   + +   VPGR E V  N  +  
Sbjct: 290 GNVAFRSPLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEI 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP MGKIA +LAD+A++T
Sbjct: 350 SVIVDYAHTPDSLENLLKAARPFIPGKMICVFGCGGDRDRTKRPKMGKIAAELADVAVLT 409

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPE+I  +++ GIP  +      +R  AIRTAI      D +++AGKGHE   
Sbjct: 410 SDNPRTEDPERILQDVLAGIPDTVKPTVICDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 469

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R+ L
Sbjct: 470 ILGT-EKIHFDDREHARDAL 488


>gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 495

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 184/478 (38%), Positives = 266/478 (55%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P   R  +  +  ++ DSR ++ G +F A+ G++  G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   +++ ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E  A++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A     RV+  G+       L         Q +  S +G+      PL G FQ
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAA L I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRI+VVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIVVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE+  +V   +     D +  
Sbjct: 428 ILGACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHESGQVVGT-DIFPFDDAEQA 484


>gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
 gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
          Length = 490

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 235/476 (49%), Gaps = 12/476 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER +  +S++S   Q G IF+ + G + DG  F   A+  GA A ++S   + +      
Sbjct: 17  ERDVKGISTNSHACQTGDIFIGMPGTRVDGGEFWQSAMEVGATAAIISPQAAEKFPP--- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +  +++VD+     +  A+  YG   +   ++ VTGT+GK++    ++    +S   +
Sbjct: 74  NDDQCVIIVDDLITVAAEIAAAFYGHPAQQLKMIGVTGTNGKTTTTHLIEYFLGQSQKPT 133

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG        F Q    TTP    L + L+   +    +  +E SSH L Q R+    
Sbjct: 134 ALIGTLYTRWPGFEQTAIHTTPFAPELQEQLAQAVAANNEYCVMEVSSHALAQGRVKQCP 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL +DH+D+H+  + YF+AK  LF      +  AII  DD Y K +++     
Sbjct: 194 FKVSVFTNLTQDHLDFHKDMEDYFSAKQLLFTPD-YLQEKAIINLDDPYGKRLIESFKPE 252

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                SV       +   +    N    T+       +F  PL G+F + N L A    +
Sbjct: 253 QVWSYSVSNAEADFYTSDLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAVSAVL 312

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             G+D    +E L     VPGR E V  N  +   + VDYAHT +SLE  LK  R    G
Sbjct: 313 HFGLDLTETIESLPHFLGVPGRMERVQINEKQDISVIVDYAHTPDSLENSLKAARPFVKG 372

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE- 441
           ++I VFGCGGDRD+ KRP+MG+ +  LAD+++VT DNPR+EDP++I  +I+ GI   +E 
Sbjct: 373 KLICVFGCGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDILTGISQSVEP 432

Query: 442 --KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
               +R EAI+TAI      D +++AGKGHE   I+   EK    D +  R+ L +
Sbjct: 433 LVISDRAEAIKTAILQAKPGDGVLIAGKGHEDYQILGT-EKIHFDDREEARKALEM 487


>gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
 gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
          Length = 494

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 251/504 (49%), Gaps = 27/504 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    ++     +I +V++DSR ++AG +F+A+ G   DGH ++ +A+  G
Sbjct: 2   KQLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVESG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS           + S+  ++ V++TR  +       +        ++ VTGT+G
Sbjct: 62  AVAVLVSKPVE-------VSSDVCVITVEDTRAAMMSCVPYFFDYPANSMRMIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG    +    +     TTP  + L   L  +  +GVTH
Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIK 234

Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I  DDAY   V+++           G     ++   V       + T+S +G D
Sbjct: 235 SGKGAVINIDDAYGHRVVEKTTAPIITYSIDG--SGTLNAHDVDMTPKSSRYTVSYDGHD 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G C+  GI    + + L+    VPGRFE +    +   + 
Sbjct: 293 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DN
Sbjct: 352 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE  
Sbjct: 412 PRTEDPIQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAKPGDIVLIAGKGHEDY 471

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+ + +     D +  R  L  I
Sbjct: 472 QILKD-KTIHFDDREEARAALKEI 494


>gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
 gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
          Length = 487

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 146/498 (29%), Positives = 231/498 (46%), Gaps = 26/498 (5%)

Query: 9   KDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL+N +++  +    +R+I  +  DSR I+ G +F+A  G   DGH FI +A+ +G
Sbjct: 2   KKLKELLNGVNVGKVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTRG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A+V                    +   +T + L + A   +        ++ VTGT+G
Sbjct: 62  AVAVVCEQ------LPENRPEEVTYIWTADTSEALGVMAGNYWDNPSRELKLVGVTGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ A+ + ++ + +G  +  +    + I         TTP  + + + L  +   G  +
Sbjct: 116 KTTTATLLYELVRLAGEKAGLLSTVCNYIGEEKIPATHTTPDALSIQELLRRMVDAGCRY 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +EASSH + Q R+ G+      F+N+  DH+DYH+T +AY  AK   F + LP  + A
Sbjct: 176 CFMEASSHAIHQKRIAGLDFDGAIFSNITHDHLDYHKTFKAYIEAKK-AFFDRLPAHAFA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  ADD     +++                      +        ++        F   F
Sbjct: 235 LTNADDKNGLVMLQNTRAHRYTYSCRTMADFTAKAIEKHLDGTLLRLDGEEVWTKFTGDF 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                   YN L        +G     VLE++  L  V GRFE +  ++ G    VDYAH
Sbjct: 295 NA------YNLLAVYAAARLLGFPKENVLEYVSLLVPVSGRFETL-ISTEGVMAVVDYAH 347

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T +++E +L  I  +     ++I V G GGDRD+ KRP M   A   +D  I+T DNPRS
Sbjct: 348 TPDAVENVLSTICGLKGRDNQVITVVGAGGDRDKTKRPEMADAACRYSDHVILTSDNPRS 407

Query: 423 EDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           EDPE+I  +++ G+            +R EAIR AI M +K D+++VAGKGHE    V  
Sbjct: 408 EDPEQIIRDMLTGVKEGFQYRVEAITDRKEAIRKAIGMASKGDIILVAGKGHENYQEVK- 466

Query: 478 GEKKMSVDCDIIREILGL 495
           G K    D ++IREI  L
Sbjct: 467 GVKHHFDDKEVIREIFDL 484


>gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 486

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 163/493 (33%), Positives = 248/493 (50%), Gaps = 26/493 (5%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+N++ +  +     R+I E+  DSR +    ++VA+ G   DGH FI  AI +GA 
Sbjct: 3   ITELVNRIPVLEIHGDNSREITELVIDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAA 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A+V        +   T+  N   ++V ++ K L   AS  YG   + +  + VTGT+GK+
Sbjct: 63  AVVCE------ELPETLAENVTYILVKDSSKALGYLASNYYGNPSQKLKLIGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV++ +  + +  G  +  +      I         TTP  I + + L+    +G     
Sbjct: 117 SVSTLLFDVFKNLGYPAALLSTVEIRIGEEIIPATHTTPDVITINRILAEAVEKGCEFAF 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHG+ Q+R++G+      FTNL  DH+DYH+T + Y   K R F+E L   + AI 
Sbjct: 177 MEVSSHGIAQNRIEGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDE-LEDTAIAIT 235

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD     +++                    L +V          ++  GK+F      
Sbjct: 236 NVDDKNGNVMLQNTKAKKKSYALKTMADYHGKLLEVDFNGM----LLNFNGKEFWTTL-- 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F VYN L+  G+   +G +   +L+ + KL  V GRFE    +  G    VDYAHT 
Sbjct: 290 TGKFNVYNLLLVFGIAAELGFEQDEILQAISKLKRVSGRFETFK-SDGGIFFIVDYAHTP 348

Query: 367 NSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           ++LE IL +I  I +   R+I VFGCGGDRD  KRP MG IA   + +AI+T DNPR+ED
Sbjct: 349 DALENILDSINDIRTKNERLITVFGCGGDRDHSKRPEMGNIATKKSTLAIITSDNPRTED 408

Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P +I  EI  G+       +    +R EAI+ AI+    +D+++VAGKGHET   + NG 
Sbjct: 409 PTQIIKEIEAGVEPQNFSKYTSIPDRKEAIKMAIKFAEPKDIVLVAGKGHETYQEI-NGV 467

Query: 480 KKMSVDCDIIREI 492
           K    D ++I E+
Sbjct: 468 KHHFDDKEVINEL 480


>gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
 gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
          Length = 483

 Score =  334 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 163/504 (32%), Positives = 245/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       +  +  +   I  V+ DSR I  G +F+A+ G + DGH FI
Sbjct: 1   MKLNELLKNIKP-------VAVIGEQSIDIKGVNIDSRKIAEGHLFIAMKGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AI QGA+AI+        D           + V++T       A+  YG   +   ++
Sbjct: 54  PKAIEQGAKAILCE------DMPEMKVEGVTYVKVESTEDAAGKVATLFYGDPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G     +    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKMGYKCGLLSTVCNYIEDEAIPADHTTPDPIELNELLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F + 
Sbjct: 168 VNTGCEYAFMECSSHAIAQKRISGLKFTGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDE 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + AI  ADD     +++          +         + +         +     G
Sbjct: 227 LPKGAFAITNADDKNGMIMVQNTKATVKTYSTRSAADFKARILECHFEGMYLDIDGHEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G    +G     +L  +  LH V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLTVYGAARMLGKQPEDILLVMSTLHSVSGRLEPIH-SPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +LK I  + +  G++I V G GG+RD+GKRP+M + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALENVLKAIHEVLNGKGKLITVCGAGGNRDKGKRPLMAQEAVKQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLDGLNAQQLKKVISIVDRKEAIRTACMMAQKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   +  G K    D +I+  I G
Sbjct: 460 TYQEIK-GVKYHFDDKEILNNIFG 482


>gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Haemophilus influenzae 10810]
          Length = 488

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVITTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
 gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
          Length = 488

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 244/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +++      ++           +++I+ +  DSR I+ G +FVA+ G + DGH +I
Sbjct: 1   MKLGNILQAITTGMVKG-------NLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI +GA A+V  +         T+      + V+++   +   A+  YG       ++
Sbjct: 54  GKAIEKGATAVVCET------LPETLSETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G  +  I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F + 
Sbjct: 168 ADEGCKYAFMEVSSHAVAQKRIGGLKFAGGIFTNLTRDHLDYHKTFENYLKAKK-AFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K + A+  ADD     + +                    + +             ++ 
Sbjct: 227 LLKTAFALTNADDRNGLVMTQNTKAKVATYSLRSLADFKGKVLEDGFEGML------LDI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G F   N L        +G     VL  L  L  V GRF+ +  +++G  
Sbjct: 281 NNREVNVQFIGRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSLR-STKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  + +GR  +I V G GG+RD+GKRPIM + A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNTIHEVLNGRGKVITVVGAGGNRDKGKRPIMAQEAVRLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLKSNDMNKVLSITDRKEAIRTACMLAQAGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +++ EI 
Sbjct: 460 NYQDIK-GVKHHFDDKEVLSEIF 481


>gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
 gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
          Length = 484

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 154/464 (33%), Positives = 223/464 (48%), Gaps = 16/464 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +++ DSR +  G +F+A+ G   DGH FI  AI +GA AI+      +Q       +  P
Sbjct: 21  DITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGAVAILCERRVPIQH-----DTQVP 75

Query: 92  ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + VVD  R  L   A R YG   H   ++ +TGT+GK+S   +V Q     G     IG 
Sbjct: 76  VCVVDGLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGIIGT 135

Query: 150 TSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     D   TTP  I L + LS   SQG    ++E SSHGLDQ R+DG+      
Sbjct: 136 NGQGLWGQLSDTLNTTPDVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHFSTAV 195

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH + +AYF AK RL      + +       D    +  +    A     
Sbjct: 196 FTNLSRDHLDYHHSMEAYFEAKWRLMRWPGLRNAVV---NLDDEWVQKNRERIMAERVWT 252

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                   +   +V          +     D D    L G F + NAL A  + +A G+ 
Sbjct: 253 YALETDADVQALEVNCHEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVMLAEGVP 312

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                  +   + V GR E + +      + VDYAHT ++LE  L++ R   +GR++V+F
Sbjct: 313 VNTAARVISNCNPVKGRMETLRSAYSPT-VVVDYAHTPDALEKALQSCREHVNGRLVVIF 371

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNR 445
           GCGGDRD GKRP M ++A   AD+ +VTDDNPR+E   +I A+I  G      +    +R
Sbjct: 372 GCGGDRDGGKRPEMARVAEQYADVVVVTDDNPRTEPSARIIADIEQGFSTEANYRVIPDR 431

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            EAI   +    + DV+++AGKGHE+   + +G +    D D +
Sbjct: 432 REAIVQTLNDSERSDVVLIAGKGHESYQEI-DGVRHPFSDQDTV 474


>gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
 gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
          Length = 486

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 230/495 (46%), Positives = 318/495 (64%), Gaps = 14/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D+    FPEL N+L +  +     +I  +++DSR    G +FVA+ G K DG  ++
Sbjct: 1   MNLRDISGTAFPEL-NELLLSEIGA--IEIGGITADSRKAAPGSLFVAVAGTKADGAAYV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A         V+           + ++ P+L V + R +LSL ASR YGK PE ++AV
Sbjct: 58  KDA---------VAKGAVAVVSGHAVDADVPVLAVTDPRLYLSLAASRFYGKQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASFV+QI   +G ++ QIG T  I+   +D   LTTP P+ L   L+ L++
Sbjct: 109 TGTAGKTSVASFVRQIWAFAGHAAAQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAA 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+KL A  FTNLGRDH+DYH T + Y  AKMRLF+ L+ 
Sbjct: 169 EGVTHAAMEASSHGLDQRRLDGVKLAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLME 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S + ++ A +AG  V +VG +G ++ LK+V    +KQ + +  +G  
Sbjct: 229 KGAPAVIFADDPWSDKAIRAAADAGLNVRTVGRKGDYLTLKRVEHFRHKQLIEVHHDGVI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PL G+FQV NALVAAGL ++ G+ +A  ++ LEKL    GR E VG    G   Y
Sbjct: 289 HEVDIPLAGDFQVANALVAAGLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKNGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  TSGRII VFGCGGDRD+GKRPIMG++A  L+DI IVTDDN
Sbjct: 349 VDYAHKPDALENVLTSVRPFTSGRIITVFGCGGDRDKGKRPIMGEVATRLSDIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSED   IR+E++   PG +E G+R EAIR A+ +L+  D L+VAGKGHE   IV +  
Sbjct: 409 PRSEDAATIRSEVMAAAPGALEIGDRAEAIRHAVSLLSNGDTLIVAGKGHEEGQIVGS-V 467

Query: 480 KKMSVDCDIIREILG 494
                D + +R  L 
Sbjct: 468 TLPFSDHEQVRTALE 482


>gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
 gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
          Length = 488

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 164/505 (32%), Positives = 250/505 (49%), Gaps = 32/505 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D++YK          I      +  I+ +  DSR + AG +FVAI G + DGH +I 
Sbjct: 3   NLKDILYKVKL-------ISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYIS 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           +AI QGA AIV        D  + I      +  DN+ K L + A+  +G   E   ++A
Sbjct: 56  KAIEQGAVAIVCE------DIPSDIHPQVTYVQTDNSAKALGVMAANYFGHPSEKLKLIA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++  S + Q+    G  +  I    + I++       TTP  + L   L  + 
Sbjct: 110 VTGTNGKTTTVSLLHQLFMNLGYHTGMISTVQNQINNAVIPATHTTPDALQLNSLLKKMV 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   V +EASSH ++Q R+ G+KL    FTN+  +H+DYH+T   Y  AK +LF++ L
Sbjct: 170 DSGCNIVFMEASSHAIEQERMAGLKLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDD-L 228

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P ++ A++  DD     +++    +               +             + +   
Sbjct: 229 PSDAFALVNVDDKRGMVMLQNCKASKYTYSLKMMAIYKAKVLSNSIQG------LELNID 282

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D  F   G F  YN L A      +  +S  VL +L ++ +  GRFE V  N+ G   
Sbjct: 283 QKDVWFRQIGYFNAYNLLAAYATAHLLEEESEEVLMNLSQIELKNGRFEQVP-NNAGITA 341

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VDYAHT ++LE +L+ I    +G    + V GCGG+RD  KRP+M +IA   +D  I+T
Sbjct: 342 VVDYAHTPDALENVLQTIDNFRTGNEQVLTVVGCGGNRDTTKRPLMAEIACRFSDRVILT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR E+PE I A++  G+P           +R EAI+ A     K D+++VAGKGHET
Sbjct: 402 SDNPRFEEPEAIIADMQKGVPVSQVRKVTNLPDRKEAIKLACSFAQKGDIILVAGKGHET 461

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
              +  GE+    D +++RE+L LI
Sbjct: 462 YQEIK-GERSHFDDKEVVREMLSLI 485


>gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
 gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
          Length = 494

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 152/477 (31%), Positives = 227/477 (47%), Gaps = 24/477 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR + +G +F+ I G   DGH F  QA A GA AI+      +         
Sbjct: 25  EITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGATAILAEKEIDV--------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P++ V ++++ +++ A R YG   + +  + VTGT+GK++V   V+QI + +G  +  
Sbjct: 76  SIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTHLVEQIVRDAGSETGL 135

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     I     + + TTP  + L +    + +  V  V++E SSH L Q R  G    
Sbjct: 136 IGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVSSHALVQGRTYGTDFD 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAK-----MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
              FTNL +DH+DYH+T + Y  AK              K   AII  DD  S+ +    
Sbjct: 196 IAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAIINQDDPVSQRMKTAT 255

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                       +        V    +     +     DFD    + G+F +YN L A  
Sbjct: 256 AAPVITYGI--DKAADFGATDVMVTSSGTTFKLHTPDGDFDVRIKMIGKFSIYNCLAALA 313

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              A+ I     +  LEK+  V GRFE V        + VDYAHT + L  +L+ I    
Sbjct: 314 TSYALEIPIHQAITSLEKVQGVAGRFEIVDAGQ-DFTVIVDYAHTPDGLLNVLETIEEFK 372

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
             R+  + GCGGDRD+GKRP M KIA+D A   + T DNPRSEDPE I  +++ G+P   
Sbjct: 373 RSRVFAIVGCGGDRDKGKRPQMAKIAIDYATDPVFTSDNPRSEDPEAIIQDMLAGLPANA 432

Query: 439 -FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +  + +R EAI  A+      DV+++AGKGHET  I+ +       D  + RE + 
Sbjct: 433 VYQVRTDRKEAITYAVNEAQAGDVILIAGKGHETYQIIGDQVLD-FDDRAVAREAIE 488


>gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
 gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
          Length = 486

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG       ++
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+  ADD     +++                    +       + +   + + G
Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G F  YN L   G  +++G D   VL  L  L  V GRFE    +  G  
Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A  L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERVLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + +REI  
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482


>gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
 gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
          Length = 488

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2866]
          Length = 488

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +      FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKVAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 488

 Score =  334 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFRQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M +IA   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQIAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
 gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
          Length = 485

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 160/506 (31%), Positives = 249/506 (49%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+ +         ++      +  I  V+ DSR I  G IFVAI G + DGH FI
Sbjct: 1   MKLTDLLSEVK-------TLSITGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA+AI+      L+D  + ++     + V++T K +   A+  YG   + +  +
Sbjct: 54  NKAIESGAKAIL------LEDVPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +  G     +    + I + A     TTP PI L + LS +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRAFGYKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLLSKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + QHR+ G+    G FTNL RDH+DYH+T + Y NAK   F+  
Sbjct: 168 VEAGCEYAFMECSSHAIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDS- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD     +++                    + +         +     G
Sbjct: 227 LPKKAFAITNADDKNGMIMVQNCKANIKTYSIQRMADFRARIIECHFEGMYLDIDGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  + +G     +L  L  L  V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPIR-SPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++L  +L  I  +  G+    I V G GG+RD+GKRP+M + A+  +D+ I
Sbjct: 340 AIVDYAHTPDALSNVLSAIHDVMEGKTGQIITVCGAGGNRDKGKRPLMAQEAVKHSDVVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EA+RTA ++  K DV++VAGKGH
Sbjct: 400 LTSDNPRFEDPQDIINDMVAGLDETQLNKVLTIVDRREAMRTAAKLAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    +  G K    D +++R+I  +
Sbjct: 460 EDYQEIK-GVKHHFDDHEVLRDIFNI 484


>gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
 gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
          Length = 488

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
 gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
          Length = 488

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK  LF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKGLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
 gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
          Length = 486

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 161/505 (31%), Positives = 249/505 (49%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     +         +   ++ I  V  DSR ++ G +FVAI G + +GH +I
Sbjct: 1   MNLKTLLKNISIKA-------SLYEEDKPITSVCFDSRKVEKGSMFVAISGTQSNGHEYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA   GA AIV             +  +   ++V NT   L+L A+  YG   E   ++
Sbjct: 54  DQATRSGATAIVCEQ------LPQLLFPDVSYIIVPNTHSALALIAANFYGNPSEKLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + Q+ +++G  +  +   +        +   TTP P+ L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYQLFRKAGQKAGLLSTVAVYIDNQRFEATHTTPDPLQLNHYLHLM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV +  +E SSHG+DQHR +G++   G FTNL RDH+DYH+T  AY + K R F+  
Sbjct: 168 VEQGVKYCFMEVSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A++  DD     +++             Y     ++ +           + +  
Sbjct: 227 LPATAFALVNNDDKNGAFMLQNTKAQKKTYALKTYSDYKAYIIESRFDG------LLLRI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    L GEF  YN L        +GID    L  +  +  V GRF+    +  G  
Sbjct: 281 NQHEVWTKLIGEFNAYNLLAVYAAATLLGIDELEALTLISAIEPVAGRFQ-YAVSVTGVI 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+
Sbjct: 340 TIVDYAHTPDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+PE I AE+  G+            +R +AI++  +   K D++++AGKGHE
Sbjct: 400 TSDNPRNEEPETILAEMEQGVQPQHFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
           T   +  G K    D + +RE L L
Sbjct: 460 TYQEIK-GVKHHFDDFETVREFLEL 483


>gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
          Length = 471

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 235/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  AIV  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +      ++ VTGT+GK++ +  + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTSQLLAQWSQALGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +       ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLSQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G++G ++   +V    N   +T      +      L G F V N LVA    +++
Sbjct: 239 GHLPAGWKGPWLSASQVEYHDNGANITFGSSWGEGQIESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E          + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+++AGKGHE   +V N       D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 470


>gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
 gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
          Length = 488

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 151/488 (30%), Positives = 243/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  GL +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGLRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + + +  +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTKLPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium johnsoniae UW101]
 gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium
           johnsoniae UW101]
          Length = 487

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 161/505 (31%), Positives = 252/505 (49%), Gaps = 33/505 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++YK   E +           +  I ++  DSR +++  +FVAI G+  DGH +
Sbjct: 1   MKVLKDILYKVTIESVTGS-------TDIDIQKIEFDSRKVESNDVFVAIRGSLSDGHDY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +AI  GA+AI+             I+ +   + V +T   L+  A+  +G       +
Sbjct: 54  IEKAIQLGAKAIICDK------LPENIQKDVTYIQVKDTNTALAFMAANYFGDPSAKLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++AS + Q+ +++G     +     +          TTP  + +   L+ 
Sbjct: 108 VGVTGTNGKTTIASLLFQLFEKAGFKVGLLSTVKIVVDKTEYPATHTTPDSLTINHYLNE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  GVTH  +E SSHG+ Q R + +  + G FTNL  DH+DYH T   Y + K   F +
Sbjct: 168 MAEAGVTHCFMEVSSHGIHQKRTEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKK-SFFD 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK +  +   DD     +++             Y      + +           + ++
Sbjct: 227 SLPKTAFVLSNIDDKNGSVMLQNTAAKKLTYALKSYADYRAQILESQLSG------LLLK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +    L G F  YN L   G  + +GIDS   L  L  L  V GRF+    +  G 
Sbjct: 281 VNDNEVWVKLIGTFNAYNVLAIYGTAVELGIDSLEALRLLSDLESVSGRFQ-YIVSDNGI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +LK I  I +     I V GCGG+RD+ KRPIM KIA DL+D AI
Sbjct: 340 TAVVDYAHTPDALENVLKTINDIRTKNEQLITVVGCGGNRDKTKRPIMAKIATDLSDKAI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR+EDPE I  E+  G+        +   +R +AI+TA ++   +D++++AGKGH
Sbjct: 400 LTSDNPRNEDPEVILDEMEQGVEGHNYKKVLRITDRKQAIKTACQLAQSKDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           ET   + NG +    D + ++EIL 
Sbjct: 460 ETYQEI-NGVRHHFDDMETVKEILE 483


>gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
 gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
          Length = 493

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 161/506 (31%), Positives = 244/506 (48%), Gaps = 34/506 (6%)

Query: 1   MKLQDLI---YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKLQ+L+     +  ELIN+            I  +  DSR ++ G +FV I G   DGH
Sbjct: 3   MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKEGSLFVCIKGYTVDGH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            +  +A+  GA AIV     ++        ++ P+++V ++++ L+  A   Y +    +
Sbjct: 54  DYAEKAVKSGAAAIVAEHPLNI--------TDVPVIIVKHSQRALARIADAFYEQPTHKL 105

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKAL 174
             + +TGT+GK+S    ++Q+ +++   +  IG      +    D + TTP  + L K  
Sbjct: 106 NLIGITGTNGKTSTTHMIEQVMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  Q V    +E SSH L   R+ G       FTNL +DH+DYH T + Y +AK  LF
Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225

Query: 235 E-----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                     K   AI+ ADD  S    K    A   +     Q   +  K +  +    
Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYFEK--VTAAEVMTYALEQKADVMAKNIQIMPKGT 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q  +            L G+F VYN L A  + I  G+    ++  +E+L  V GRFE V
Sbjct: 284 QFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELV 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +     + VDYAHT +SLE +L   R +T G+I  V GCGGDRD+ KRP M +IA+  
Sbjct: 344 NCDQ-DFPVIVDYAHTPDSLENVLTTCRELTEGKIFCVIGCGGDRDKTKRPQMAQIAVKY 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  + T DNPRSEDP  I  ++ +G+P   +    NR +AI  AI    K D +++AGK
Sbjct: 403 ADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGK 462

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET  I+ + +     D  I  + +
Sbjct: 463 GHETYQIIGD-QVYDFDDAKIAVDAI 487


>gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
 gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
          Length = 488

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 239/488 (48%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y     N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDASAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 485

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 153/505 (30%), Positives = 241/505 (47%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+       +   ++       R I  ++ DSR +Q G +FVA+ G + DGH +I
Sbjct: 3   MELDILLKSVSVVRVTGDTV-------RNITGINMDSRLVQPGDLFVAVKGTQADGHAYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +A+ +GA A+V  +      +          + V ++   +   A+  YG       ++
Sbjct: 56  GKAVEKGAVAVVCEA------WPEVQAEGVTYVQVKDSESAVGRLATVFYGDPTSKLQLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +  G          + I   A     TTP PI L + L  +
Sbjct: 110 GVTGTNGKTTIATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + QHR+ G+K   G FTNL RDH+DYH+T + Y +AK   F + 
Sbjct: 170 ADEGCKYAFMEVSSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKK-AFFDG 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + A+   DD     +++                    + +             ++ 
Sbjct: 229 LPKGAFAVTNVDDRNGMIMVQNTKAVVKTYSLRAAADFKAKVLEESFEGMC------LDV 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +   P  G F V N L      + +G  +  VL  L  L  V GRFE    +  G  
Sbjct: 283 NGKEVSVPFIGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFE-TIRSKEGVT 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  +  I   R  +I V G GG+RD+GKRPIM + A+  +D  I+
Sbjct: 342 AIVDYAHTPDALVNVLSTVNEILKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P++I  +++ G+        I   +R EAIRTA  M    DV++VAGKGHE
Sbjct: 402 TSDNPRFEEPQEIINDMLAGLDKEEMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
               V  G K    D ++I+E+ G+
Sbjct: 462 DYQEVK-GVKHHFDDHEVIKEVFGI 485


>gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
 gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
          Length = 496

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 250/504 (49%), Gaps = 27/504 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    ++     +I +V++DSR ++ G +F+A+ G   DGH ++ +A+  G
Sbjct: 4   KHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS           I S+  ++ V++TR  +       +        ++ VTGT+G
Sbjct: 64  AVAVLVSKPVE-------ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG    +    +     TTP  + L   L  +  +GVTH
Sbjct: 117 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 177 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVK 236

Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I  DDAY   V+++           G     ++   V       + T+S +G D
Sbjct: 237 SGKGAVINIDDAYGHRVVEKTTAPIITYSIDG--SGTLNAHDVDMTPKSSRYTVSYDGHD 294

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G C+  GI    + + L+    VPGRFE +    +   + 
Sbjct: 295 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 353

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DN
Sbjct: 354 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 413

Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE  
Sbjct: 414 PRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHEDY 473

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+ + +     D +  R  L  I
Sbjct: 474 QILKD-KTIHFDDREEARAALKEI 496


>gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
 gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
          Length = 486

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG       ++
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+  ADD     +++                    +       + +   + + G
Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G F  YN L   G  +++G D   VL  L  L  V GRFE    +  G  
Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A  L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + +REI  
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482


>gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus
           influenzae F3031]
 gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae F3031]
          Length = 488

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYHQLSRHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWVELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGAGFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-IVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
 gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
          Length = 486

 Score =  333 bits (854), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 246/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG       ++
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+  ADD     +++                    +       + +   + + G
Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G F  YN L   G  +++G D   VL  L  L  V GRFE    +  G  
Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A  L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAAKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + +REI  
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482


>gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
 gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
          Length = 494

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 251/504 (49%), Gaps = 27/504 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +++  L    ++     +I +V++DSR ++ G +F+A+ G   DGH ++ +A+  G
Sbjct: 2   KHLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSG 125
           A A++VS           I S+  ++ V++TR  +       +        ++ VTGT+G
Sbjct: 62  AVAVLVSKPIE-------ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG    +    +     TTP  + L   L  +  +GVTH
Sbjct: 115 KTTTTHMIRHILRAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE++       
Sbjct: 175 CVMEVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVK 234

Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I  DDAY + V+++           G     ++   V       + T+S +G D
Sbjct: 235 SGKGAVINIDDAYGQRVVEKTTAPIITYSIDG--SGTLNAHDVDMTPKSSRYTVSYDGHD 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G C+  GI    + + L+    VPGRFE +    +   + 
Sbjct: 293 YTVAMNTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELI-EEGQPFAVV 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE IL+  + I   RIIVVFGCGGDRD  KRPIMG+IA    D+  VT DN
Sbjct: 352 VDYAHTPDGLENILQTAKAIQENRIIVVFGCGGDRDATKRPIMGRIAAQYGDVVYVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PR+EDP +I  ++  G+         +    +R EAI+ AI+     D++++AGKGHE  
Sbjct: 412 PRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKGHEDY 471

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+ + +     D +  R  L  I
Sbjct: 472 QILKD-KTIHFDDREEARAALKEI 494


>gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 501

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 230/480 (47%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R+   ++ V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     G    ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           NA        +      +K   V       ++T      +      L G F V N L A 
Sbjct: 262 NAVAVSTDASFSSDHKFVKVTDVSFSLQGVKITFESSWGNGALNSRLIGAFNVNNLLTAL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E+            + VDYAHT ++LE  L+  
Sbjct: 322 ASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA  LAD  I TDDNPR+ED  KI A+I+ G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEKLADKVIATDDNPRTEDNAKIMADILKGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
 gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
          Length = 974

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 154/483 (31%), Positives = 238/483 (49%), Gaps = 12/483 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L     ++ +  ++ +  DSR +Q G +FVA+ G+  DG  +I  A+ +GA A++  
Sbjct: 10  LGDLLAVEAEFADVMVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGASAVLAD 69

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
                 +       N  ++  D+ R  L   ASR Y +  + +  +AVTGT+GK++V+  
Sbjct: 70  RVGVSAEQVVNAHGN--VIWRDDLRSELGDIASRFYDEPSKQMRVIAVTGTNGKTTVSHL 127

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++  R G S+  IG               TTP  I L + L+     G   V++EASS
Sbjct: 128 LVRLLMRLGESAKTIGTLGYGHPDHLIPLANTTPDAIQLHEILAACREDGARFVAMEASS 187

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ RL  +++    FTN+ RDH+DYHQT QAY+ AK +L      +           
Sbjct: 188 HGLDQGRLGCVEISTAVFTNITRDHLDYHQTMQAYWEAKAKLASWHGLRNLVLNADDAGV 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                +                   + L +         + I V+ + + F   L GEF 
Sbjct: 248 AKMAAVAEHGVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTRLMGEFN 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSL 369
           V N L      ++ G  ++LV++ L+++  V GR + +   S        +DYAHT ++L
Sbjct: 308 VANILAVLAALVSEGFSASLVVDALKEIAPVKGRMDCLPHTSGAQLPAVVIDYAHTPDAL 367

Query: 370 EMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +  L  +R    +G++  VFGCGGDRD+GKRP+MGKIA   AD  +VT DNPRSE P+ I
Sbjct: 368 QQALNALRHHCTTGKLWCVFGCGGDRDKGKRPLMGKIAASSADRVVVTSDNPRSEVPDVI 427

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            AEI  G+          +R EAIR AI +   +DV+++AGKGHE    V  G +    D
Sbjct: 428 IAEIRGGMEATDQVRLVTDRGEAIRDAIFLAAPEDVILIAGKGHEDYQEV-RGVRSHFSD 486

Query: 486 CDI 488
            ++
Sbjct: 487 HEV 489



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/460 (19%), Positives = 167/460 (36%), Gaps = 47/460 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            ++  +     VS+D+R +++  +F A+VG K D H F+ QA   GA   VVS    +  
Sbjct: 531 ELRGEDLPFAGVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGACGAVVSRWVDV-- 588

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                  + P + V++TR  L  +A     +    ++AVTG+SGK+SV   +  I    G
Sbjct: 589 -------DLPQIKVEDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEMLAAIFSEEG 641

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G  +               P+ L        S     + + A+  G   + +  
Sbjct: 642 RVLATSGNLN----------NDIGVPLTLL---RLDDSYQFAVIELGANHVGEIAYTVGL 688

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++  A   TN+G  H++   ++     AK  ++  L+PK    +   DD     +   A 
Sbjct: 689 VRPDAALITNVGEAHLEGFGSRNNIAKAKSEIYTGLVPKGVAVVNLDDDYSQDFLTLNAS 748

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                      +              + ++ +S+ G+       L G+ Q+ NAL AA  
Sbjct: 749 RNVLTFSIENTRANCFAKSWSLDPVGRPRIEVSINGELIQLSLNLIGKHQIANALAAAAA 808

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
             A G     + + L KL    GR      +        D Y    +S+   +  +  + 
Sbjct: 809 ARAAGASLTSIRDGLNKLQPFKGRM--FPKSLGRWHWIDDTYNANPSSMRAAIDALARLD 866

Query: 381 SGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTD-----DNPR------------ 421
             +++++   G  G++       +G  A       +        D  R            
Sbjct: 867 EPKVLILGRMGELGEQSAKLHADIGAYAARAGIRRLFISRDDAGDYARGYRSVTNDGQLF 926

Query: 422 -SEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNK 458
             + PE I  ++I  +P    + KG+R  A+    +   K
Sbjct: 927 VGDGPEAIAKQLIESMPEGVVLVKGSRSAAMEKVFDEAQK 966


>gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
          Length = 489

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 219/494 (44%), Positives = 304/494 (61%), Gaps = 11/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  LI    P     LS       +  +  +++DSR ++   +F A+ G K DG  F+
Sbjct: 1   MNLSALISALPP---GTLSAPSSANLDFSVTGLTADSRVVEPSNLFFALAGVKTDGARFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI++       ++A      +        +L  D+ R  L+  A+  +G  P  + AV
Sbjct: 58  QEAISK------GAAAIVAASGAGISTDGVAVLRSDDPRLALARMAAAFFGPQPRVMAAV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF++QI   +G  +  +G T  ++    +   LTTP P+ L + L+ L+S
Sbjct: 112 TGTAGKTSVASFLRQIWAHAGEKAAMLGTTGVVAPGRSEYGSLTTPDPVALHRLLAELAS 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG+ L    FTNLGRDH+DYH T + Y  AKMRLF+ LLP
Sbjct: 172 EGVTHAAMEASSHGLDQRRLDGVMLSVAGFTNLGRDHMDYHPTMEDYMAAKMRLFDTLLP 231

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S++ ++ A  AG RVL+VG +G F+ LK+V  + +KQ   + ++G+ 
Sbjct: 232 KGAPAVIFADDPWSEQAVEVAERAGARVLTVGRKGGFLSLKRVEHLRHKQIAEVHLDGRI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQ+ NALVAAG+ IA G  +   +  LE L    GR E VG+   G   Y
Sbjct: 292 FEIHVPLAGDFQISNALVAAGMAIATGTGADQAMAALEHLTGASGRLELVGSTGDGAPAY 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   ++E +L  +R  T+GRII+VFGCGGDRD+GKRPIMG IA  LAD+ IVTDDN
Sbjct: 352 VDYAHKPEAMENVLDAVRPFTTGRIIMVFGCGGDRDRGKRPIMGSIATKLADVVIVTDDN 411

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR+EDP +IR+EI+   PG  E  +R EAIRTA+EML   D L+VAGKGHE    V +  
Sbjct: 412 PRTEDPAEIRSEILVAAPGATEIADRAEAIRTAVEMLEAGDTLIVAGKGHEQGQTVGD-T 470

Query: 480 KKMSVDCDIIREIL 493
                D + IR  L
Sbjct: 471 VLHFSDHEEIRAAL 484


>gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
 gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
          Length = 499

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 161/503 (32%), Positives = 257/503 (51%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +LI    P       +      +++I+ +  DSR +    +F+ I G   DGH +I
Sbjct: 1   MKISELIKDITP-------VETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI +GA A+V+     +         +   + V+++R+ +   AS  Y    +N+  +
Sbjct: 54  DKAIKKGAVAVVIEKDLEV------YSEDITYIRVNDSRETMGYLASTFYNYPLKNLSLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I + +G ++  +G   + I         TTP  + L +  + +
Sbjct: 108 GVTGTNGKTTTTYLIKAILEEAGFNTGLVGTIKNIIGDETLPATRTTPESLDLYRLFARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GVTH  +E SSH LD  R++G++   G FTN+ +DH+DYH++   Y  AK RLF + 
Sbjct: 168 VDSGVTHAVMEVSSHALDLKRVEGMEFKIGVFTNISQDHLDYHKSLDEYLKAKSRLFRQ- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L     A++  DD++S +++K            G      +   +        V+     
Sbjct: 227 LEPGGWAVVNIDDSHSDKIIKSTTGNIITYGIEGDCDLKANEINLSPTGVSYHVS---GK 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + F     L G F VYN+L A      +GI+   +   +EK+  V GRFE V    +   
Sbjct: 284 ESFKIDLNLTGLFNVYNSLAAISCGHVLGINGETIKAGIEKVQGVAGRFELV-NEGQDFA 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + +E +L+  R    G IIVVFGCGGDRD+GKRP+MGKIA  L D  I+T 
Sbjct: 343 VVVDYAHTPDGMENVLETAREFVKGNIIVVFGCGGDRDKGKRPLMGKIATQLGDYCIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DNPRSEDP +I  +I  GI         ++++ +R +AI +AI    K D++++ GKGHE
Sbjct: 403 DNPRSEDPMEIIKDIEKGIQEEVISDTPYVKEPDRRKAIFSAINSARKDDMVIIFGKGHE 462

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I  + +     D ++ RE L
Sbjct: 463 TYQIFKD-KTIPFDDREVAREAL 484


>gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 490

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 241/494 (48%), Gaps = 11/494 (2%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +L+    +  +   +  +  ++++S  +Q  + F AI GN  DGH FI  AI +GA
Sbjct: 2   KELQDLLTGEKVVNLGKSQV-VKGITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITKGA 60

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
             + +    S+ D          I+  +NTRK L+  +++ Y +  +   ++ +TGT+GK
Sbjct: 61  STVFIQ-DTSIIDTLKRKYPYINIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV++ + Q  + +G     IG  +         +  TTP P+   + L+ +  +G   V
Sbjct: 120 TSVSNLLAQYYENAGYKVGVIGTINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDVV 179

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SSH   Q R+       G FTNL +DH+DYH T + YF AK   F ++      AI
Sbjct: 180 VAEVSSHAAHQFRVYSTLFHGGIFTNLTQDHLDYHGTMENYFLAKREFFNQIQLFNDKAI 239

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              +                             +K       +    I  +GK  +F   
Sbjct: 240 ASVNIDDPYGKRIYNDFKEKIDFITYGFEGEFKIKDYNLSLFETLFNIEYKGKTLNFKTK 299

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYN   +    I  G D   + +    L  + GRFE V   ++   + +DYAHT
Sbjct: 300 LRGLFNVYNLSASISFLIKDGFDIDFLKDKTLDLKPIRGRFEVV--EAKDFIVVIDYAHT 357

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE ILK++  I   R+I VFG GG+RD+ KRP+MGK+A D +DI I+T DNPR EDP
Sbjct: 358 PDALENILKSLNQIKQNRVITVFGAGGNRDRTKRPLMGKVAQDFSDIVILTSDNPRFEDP 417

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            +I  +I+ GI      I + +R +AI  AI+   K D++++AGKGHE   I+ + +   
Sbjct: 418 NQIIKDILEGITQKSKVIVEPDRKKAIEYAIKTAQKGDIVLIAGKGHENYQIIKD-QVIP 476

Query: 483 SVDCDIIREILGLI 496
             D +++ +IL  I
Sbjct: 477 FDDKEVVNQILKEI 490


>gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 495

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 244/495 (49%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   L+ +     ER + E++ DSR   AG +FVAIVG+  DG  +IPQAIAQG  A+
Sbjct: 4   RNLRALLAPWVADAPERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +    +D +       P++ +    + LS  A R Y +      ++ VTGT+GK+++
Sbjct: 64  IAEADGEAEDGTIRESHGIPVIYLSQLNQRLSALAGRFYHQPGADLRLIGVTGTNGKTTI 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G            +  TT S + +   L  L SQG T  ++E
Sbjct: 124 TQLLAQWGQLLGETSAVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A +FTNL RDH+DYH   + Y  AK  LF      E      A
Sbjct: 184 VSSHGLVQDRVAALPFAASAFTNLSRDHLDYHGDMEHYEQAKWLLFSTHHSGEKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + ++ +A    +       + G+++   +V    +   ++            
Sbjct: 242 DDEVGQRWLAKSPDAVAVTMEQRLPENWAGRWVSASQVDYHDSGASISFDSSWGKGVLES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVAA   +A+G    ++ +   +L  V GR E   T      + VDYAH
Sbjct: 302 RLMGAFNVSNLLVAAATMLALGYPLDVLCKTSSQLQPVCGRMEVF-TAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALEAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQYADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I A+I++G+           R EA+  AI      DV++VAGKGHE   +V N    
Sbjct: 421 PRAIMADILNGMLDAGHAQAISGRAEAVTGAIMQAKPDDVILVAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
              D   +  +LG+I
Sbjct: 481 Y-SDRVTVARLLGVI 494


>gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 494

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 149/480 (31%), Positives = 242/480 (50%), Gaps = 13/480 (2%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
               ++ E+  DSR ++ G +FVA+ G++ DG  +IPQAIA+GA A++  +  + Q  S 
Sbjct: 14  APNIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLAETEDAQQHLST 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
            I    PI+        LS  A   Y      +  + VTGT+GK++++  + Q     G 
Sbjct: 74  KIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGKTTISQLLAQWTTLLGH 133

Query: 143 SSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          ++   TT S + +  +L+    +G    ++E SSHGL QHR++ 
Sbjct: 134 RSAVMGTIGNGLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVSSHGLVQHRVEA 193

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD+  +  ++   
Sbjct: 194 LAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQIIN--ADDSVGQTWLQEQP 251

Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           N     C+     +Q +++    +       ++         +    L G+F V N L+ 
Sbjct: 252 NAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSALIGQFNVSNLLLV 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +++G D   +++ + +L  V GR E +  +++     VDYAHT ++LE  L+  R 
Sbjct: 312 FATLLSLGYDIEKLMKTVPQLTGVCGRMERLSASNQPT-AIVDYAHTPDALEKALQAARL 370

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              G++  VFGCGGDRD+GKRPIM KIA   AD  IVTDDNPR+E   +I  +I+ G   
Sbjct: 371 HCQGKLWCVFGCGGDRDRGKRPIMAKIAEQFADHVIVTDDNPRTESAAQIVQDILAGFEH 430

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                    R +AI  A++  +  DV+++AGKGHE   I+   +K+   D + +++   +
Sbjct: 431 PQHVEVCHARDQAIIQALQKADSDDVVLIAGKGHEDYQIIGT-QKQHFSDQETVQQYFKV 489


>gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 481

 Score =  333 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 154/501 (30%), Positives = 247/501 (49%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  ++    P       +  +   E ++  V  DSR +  G +FVAI G + DGH FI
Sbjct: 1   MTLSSILKNVKP-------LNVVGNAEVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+AQGA A++  +        A +      + V++T   +   A+  YG+  + +  +
Sbjct: 54  SKAVAQGAVAVLCET------MPAELPQGVTFVQVESTEDAVGPVATLFYGEPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +    + I   A     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH + Q R+ G+    G F+NL RDH+DYH+T + Y NAK   F ++
Sbjct: 168 VEAGCEYVFMECSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKK-AFFDM 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD     +++          +         + +        ++  +  G
Sbjct: 227 LPKQAFAITNADDKNGMVMVQNTRATVKTYSTRSMADFKAKILECHFEGMYLEINGAEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  + +G     +L  +  LH V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGTAVMLGKRPEDILLVMSTLHSVNGRLEPLR-SPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M   A+  +D  I+
Sbjct: 340 VIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP+ I  +++ G     +   +   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEDPQAIINDMLAGLNAQQMKKVVSIVDRREAIRTACMMAQKGDVVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIRE 491
               +  G K    D ++++E
Sbjct: 460 DYQEIE-GVKHHFDDKEVVKE 479


>gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
 gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
          Length = 488

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 148/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++  TGT+GK++++  
Sbjct: 64  TELSSEHLTVDFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGATGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +L+     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLATFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
 gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
          Length = 486

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 168/506 (33%), Positives = 252/506 (49%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       I  +   E+ I  ++ DSR I+   +FVAI G + DGH +I
Sbjct: 1   MKLNELLKNVKP-------IQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA AI+V       D    +  N   + V +T + +   A+  YG       ++
Sbjct: 54  DKAIELGACAILVE------DIPEKLSENITYIQVKSTEEAVGKVATTFYGDPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G     +    + I   A     TTP PI L   L+ +
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKFGHKVGLLSTVCNYIDDKAVPASHTTPDPIELNILLAKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F++ 
Sbjct: 168 VEEGCEYAFMECSSHAIHQRRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K++ AI  ADD     +++          +        HL +        +V     G
Sbjct: 227 LGKDAFAITNADDKNGMIMVQNCKATVKTYSTKRAADFKAHLLECHFEGMYLEVNGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  + +G     +L  L  L  V GR E + T+  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAVMLGKKPEDILVALSALKNVNGRLEPI-TSLDGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +DYAHT ++LE +L  I  +  G+   II V G GG+RD+GKRP+M   A+  +D  I
Sbjct: 340 AIIDYAHTPDALENVLLAIHEVLEGKGGHIITVCGAGGNRDKGKRPLMALEAVKKSDNVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR+EDP+ I  +++ G+        +   NR EAIR A  M +K DV+++AGKGH
Sbjct: 400 LTSDNPRNEDPQAIINDMLEGLDNTQKKKVLTIVNRKEAIRAACMMAHKGDVVLIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           ET   + NG K    D +++REI GL
Sbjct: 460 ETYQEI-NGVKHHFDDHEVVREIFGL 484


>gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2846]
          Length = 488

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 150/488 (30%), Positives = 241/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-IVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
          Length = 488

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 241/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  AI  GA A+V  
Sbjct: 4   LTALFNLPELKDDVELHSMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAIHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  S  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRSAVMGTIGNGLLGQIIEAKNTTGSAVEIQSSLSNFKQAGADFASIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGHQWLTELPDAIAVSMNADFKVGLHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 EADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
 gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
          Length = 483

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 159/503 (31%), Positives = 244/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       I  +   + +I  V+ DSR I+AG +FVA+ G + DGH FI
Sbjct: 1   MKLNELLKNITP-------IKIIGNDDVEITGVNIDSRRIKAGHLFVAMKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA +++        D    ++     + V++T   +   A+  YG     +  +
Sbjct: 54  GKAIELGAISVLCE------DLPEVLQEGITYVQVESTEDAVGKVATLFYGNPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +    + I         TTP PI L + L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G+K     FTNL RDH+DYH+T + Y NAK   F + 
Sbjct: 168 VEAGCEYAFMECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD     +++                    + +        ++     G
Sbjct: 227 LPKDAFAITNADDKNGMIMVQNTKATVKTYSIRTLADFRARILECHFEGMYLEIDGREVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     VL  L  LH V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIH-SPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +  G+  +I V G GG+RD+GKRP+M + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G K    D +++ EI 
Sbjct: 460 TYQEIK-GVKHHFDDKEVLHEIF 481


>gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
 gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
          Length = 483

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 159/505 (31%), Positives = 245/505 (48%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       I  +   + +I  V+ DSR I+ G +FVA+ G + DGH FI
Sbjct: 1   MKLNELLKNITP-------IKIIGNDDVEITGVNIDSRRIKTGHLFVAMKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA +++        D    ++     + V++T   +   A+  YG     +  +
Sbjct: 54  GKAIELGAISVLCE------DLPKVLQEGITYVQVESTEDAVGKVATLFYGDPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +    + I         TTP PI L + L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F + 
Sbjct: 168 VEAGCEYAFMECSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDS 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD     +++                    + +        ++     G
Sbjct: 227 LPKDAFAITNADDKNGMIMVQNTKATVKTYSIRTLADFRARILECHFEGMYLEIDGREVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     VL  L  LH V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDVLLVLSTLHSVNGRLEPIH-SPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +  G+  +I V G GG+RD+GKRP+M + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
           T   +  G K    D +++ EI  +
Sbjct: 460 TYQEIK-GVKHHFDDKEVLHEIFKV 483


>gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
 gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
          Length = 517

 Score =  333 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 168/508 (33%), Positives = 246/508 (48%), Gaps = 25/508 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +LI      L   +        +R ++ VSSDSR I  G IFVA+ G   DGHL I 
Sbjct: 12  KLGELIDG----LGGLVDRRGACASDRPVSGVSSDSRQIGPGSIFVAVRGFITDGHLHID 67

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
            AI  GA AIV  +      + A +R     L V  +RK L+  +   YG   +   ++ 
Sbjct: 68  SAIEAGAVAIVCEA------YPAELRDGVCYLRVTESRKALAELSKNCYGNASDQLMLIG 121

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ A  +  +   +G+ +  IG     I +   +   TTP P  L      + 
Sbjct: 122 VTGTNGKTTTARLISSMLNAAGIPAGYIGTGLCRIGNRDIELERTTPEPNGLHALFRQMV 181

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G     +E SSH L   R+ G++  +  FTNL  +H+D+H+T + Y  AK  LF   L
Sbjct: 182 DAGCCAAVMEVSSHALVLDRVHGLRFRSAVFTNLTPEHLDFHETMEEYAAAKRLLFSR-L 240

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL------SVGYQGKFIHLKKVCAIHNKQQVT 292
             +  A++ ADD  +  +     N            S+             +        
Sbjct: 241 TDDGFAVLNADDPQAGFMAAGLPNDYLYCCSLSGNSSLCDSDHRFRAFISASTVEGSTAE 300

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++   +      PLPGE+ V N L A  + I++G+D A  L  L +   VPGR E + + 
Sbjct: 301 VTFGAQSATMQVPLPGEYNVMNMLEAFAVGISLGLDPAKALAGLAESEAVPGRMERIWSA 360

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            R     VDYAHT ++L+  L+ +R +T    ++ VVFGCGG+RD+ KRP MG+IA +LA
Sbjct: 361 DRSRCGVVDYAHTPDALQKALETLRAVTPSGSKLSVVFGCGGNRDRKKRPEMGRIAAELA 420

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  I+T DNPR E+PE I  E+  G+ G   +   +R EAIR A+E L   D+L+VAGKG
Sbjct: 421 DRVILTSDNPRDENPELILDEVEAGMAGRVHLRISDRAEAIRRAVEGLGTGDILLVAGKG 480

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496
           HE    V  G K    D + +      +
Sbjct: 481 HEEYQEVA-GRKHHFSDRETLAACFAEV 507


>gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
 gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
          Length = 483

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 245/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +++    P       I  +     +I  V+ DSR I+AG +FVAI G + DGH FI
Sbjct: 1   MKLNEVLKNITP-------IKIVGNDNVEITGVNIDSRRIKAGHLFVAIRGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA+A++        +    +  +   + V++T   +   A+  YG       ++
Sbjct: 54  DKAIELGADAVLCE------ELPEKLSDHVTYVQVESTEDAVGKVATLFYGNPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +    + I         TTP PI L + L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y NAK   F + 
Sbjct: 168 VEAGCEYAFMECSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD     +++                    + +        ++     G
Sbjct: 227 LPKDAFAITNADDKNGMIMVQNTKATVKTYSIRSMADFRARILECHFEGMYLEIDGREVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     +L  L  LH V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAIMLGKKPEDILLVLSTLHSVSGRLEPIH-SPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +  G+  +I V G GG+RD+GKRP+M + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALANVLNAIHEVLDGKGHVITVCGAGGNRDKGKRPLMAQEAVRQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP++I  E++ G     +   I   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEDPQEIINEMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +++ EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLHEIF 481


>gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
          Length = 493

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 159/497 (31%), Positives = 250/497 (50%), Gaps = 9/497 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      +++    +         ++E+  DSR +Q G  FVA++G+  DG  FI  AI 
Sbjct: 1   MTKAISMDVLLSPWVDCPSLSSVLVSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++  +       +  I  + P++ +D   + LS  A +LY     +++ VTGT+G
Sbjct: 61  QGANAVLAQACEVKAHGTVEIIDDVPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q  +  G  +  +G T        Q    TT + + + K LS L++Q  T+
Sbjct: 121 KTTITQLIAQWLELLGHKAAVMGTTGNGFLDNLQQAANTTGNAVEIQKTLSSLANQHATY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T + Y  A  +L      +   A
Sbjct: 181 TALEVSSHGLTQGRVKALSFAAGVFTNLSRDHLDYHGTMEEY--ANAKLELFTQHQCERA 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD        +  NA    L         I    V    +   +    +       
Sbjct: 239 IINVDDEVGHAWATQLSNAIAVSLKPNTEFESAIWATDVRYAESGITIQFDGKFGSGQLH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G D   +LE   +L  V GR E   T  R  ++ VDYA
Sbjct: 299 APLIGEFNATNLMLAFATLLSLGKDKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP +I  +++ G+      I + +R +A+  A+E  + +D++++AGKGHE    + NGE 
Sbjct: 418 DPVQIVKDMLSGLSKPAEAIVQHDRFKALSYAVENASPKDIILLAGKGHEDYQ-IRNGET 476

Query: 481 KMSVDCDIIREILGLIL 497
               D +   ++LGL L
Sbjct: 477 IHYSDRESAMQLLGLSL 493


>gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 488

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 240/488 (49%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++      + LS  A   Y    +N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-IVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
 gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
          Length = 495

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 150/511 (29%), Positives = 235/511 (45%), Gaps = 37/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQ L       L+    +      +     + +DSR +Q G +F+ + G   DGH + 
Sbjct: 1   MQLQQL-----ASLLAVSRVVGDGTVDC--RGIGADSRRVQQGDLFLCLPGFTVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAIA GA A+VV     +           P LVV + R  +++ A  ++      +  +
Sbjct: 54  EQAIASGAAALVVERELDVP---------VPQLVVKDARHAMAVLADYMFDSPSRRMRMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++   +++I + +G+++  IG         +     TTP  + L + L  +
Sbjct: 105 GITGTNGKTTITYLIEKIMKDAGVNTGLIGTIQMRYGGQSYPMSGTTPEAVELQRYLGNM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231
           + QGV    +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK       
Sbjct: 165 AEQGVQCCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRL 224

Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F         A++ ADD  S  +  +                      +        
Sbjct: 225 GNAFSRDASDSKYAVLNADDPASSYLQAQTAAQVITYGVEKESDV--QASSITIGSKGTS 282

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S    D D    + G+F VYNAL A    +  GI    +   LE +  V GR E V 
Sbjct: 283 FHVSTFKGDTDIELRMVGKFNVYNALAAITAALLEGISLVDIKRSLESIAGVDGRVEPVD 342

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VDYAHT + LE +L+ ++    G++  VFGCGGDRD+ KRP+MGKIA   +
Sbjct: 343 AGQ-PFAVIVDYAHTPDGLENVLRTVKEFAVGKVWCVFGCGGDRDRTKRPLMGKIAARYS 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D + +T DNPR+EDP+ I  +I  G+         +    +R  AI  A+EM +  DV++
Sbjct: 402 DHSFITSDNPRTEDPKVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVVL 461

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AGKGHET  ++         D  + +E + 
Sbjct: 462 IAGKGHETYQLIG-KTVHEFDDRIVAKEAIR 491


>gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
 gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
          Length = 529

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 245/501 (48%), Gaps = 16/501 (3%)

Query: 11  FPELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +L+NQ  I P          ++  + +DSR +QAG +F+ + G++ DG  F+ +A+ +
Sbjct: 16  LGQLLNQAGIQPQVVQGSLEGVQVRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALTR 75

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPEN--ILAVTG 122
           GA A +++     +        + PILV+      + L+  A+  YG       ++ VTG
Sbjct: 76  GAVAALIAQEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYGFPARQLTLVGVTG 135

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQG 181
           T+GK++    ++ + Q +G  +  +G          +    TT  P+ L ++L      G
Sbjct: 136 TNGKTTTTHLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEAG 195

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +E SSH L Q R  G    A  +TNL +DH+D+H + + Y+ AK  LF+     +
Sbjct: 196 AEVAVMEVSSHALAQDRAWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFQPE-YLQ 254

Query: 242 SPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             A++ ADD   + +++            L        +    V    N  Q T+     
Sbjct: 255 GRAVVNADDEGGRRLLETIPASLEPWAYSLQPLEGIPALWPGDVQVHPNGLQATLHTPLG 314

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G F + N L A G+ + +GI   L+   L     VPGR E V    +   +
Sbjct: 315 TLAVAAPLVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGRMERVTLPGQDITV 374

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE +LK +R    GR+I VFGCGGDRD+GKRP MG+IA   AD  +VT D
Sbjct: 375 IVDYAHTPDGLENLLKALRPQVQGRLICVFGCGGDRDRGKRPQMGRIAATWADRVVVTSD 434

Query: 419 NPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDP++I  +I+ GIPG     + +R +AIR AI      D +V+AGKGHE   I+ 
Sbjct: 435 NPRTEDPQQILQDILAGIPGSPWAVEVDRRQAIRLAILEAQPGDTVVIAGKGHEDYQILG 494

Query: 477 NGEKKMSVDCDIIREILGLIL 497
             EK    D +  R  L L L
Sbjct: 495 R-EKIHFDDREEARAALALRL 514


>gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 489

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 154/478 (32%), Positives = 244/478 (51%), Gaps = 13/478 (2%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  +  +  DSR +  G +FVA+ G++ D   F+PQ+I+ GA A+V+ +    +  S 
Sbjct: 13  LSDINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENEHLSI 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             ++N P++   +    LS  A + Y    E +  + VTGT+GK++V+  + Q     G 
Sbjct: 73  QWQNNVPVIHYYHLSANLSALAGKFYEHPSEKLTLVGVTGTNGKTTVSQLLAQWATLFGH 132

Query: 143 SSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G          ++ + TT S + + + L+    +G    S+E SSHGL QHR++ 
Sbjct: 133 KAAVMGTIGNGLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQHRVEA 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K  A  FTNL RDH+DYH+T + Y  AK R F +L P+     + ADD      +    
Sbjct: 193 LKFKAAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLAPELQI--LNADDPIGAAWLSELP 250

Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           N     CR        ++++  ++C  H    + ++    +     PL G F V N L+A
Sbjct: 251 NGIAVSCRPDFQPTSKQWLYATQICFTHEGAVIDVASSWGNGTLHSPLIGAFNVSNLLLA 310

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + +A+G     ++  + +L  V GR E +    +   + VDYAHT ++LE  L   R 
Sbjct: 311 TAVLLALGYSFDELIRTVSQLKGVNGRMELIKKAGKPT-VIVDYAHTPDALEKALNAARE 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G++  +FGCGGDRD GKRP+M K A   AD+ IVT DNPR+EDP KI A+I+ G   
Sbjct: 370 HCKGKLWCIFGCGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEADILTGFSR 429

Query: 439 FI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                   +R EAI+  IE   + DV+V+AGKGHE   I+ + +     D ++    L
Sbjct: 430 MEDVGVIPDREEAIKFTIENAVENDVIVIAGKGHENYQIIGD-KTLHFSDQEVAEAYL 486


>gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
 gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
          Length = 499

 Score =  332 bits (851), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 142/482 (29%), Positives = 216/482 (44%), Gaps = 17/482 (3%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               +R I+ +  DSR +  G +F A+ G + DG  FI +A+ +GA AIV          
Sbjct: 18  KGSLDRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGAVAIVTQK------M 71

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
            A       ++ V + R  L+  A R Y     ++  + VTGT+GK++V   ++      
Sbjct: 72  PAHPPGKVTVIQVADARATLARVAQRYYKFPDRDMTVIGVTGTNGKTTVTHLLKHFLNGD 131

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                       + +       TTP  + +   ++ +   G     +E SSHG+DQ R+ 
Sbjct: 132 QRVGLLGTINYDLGARTVPAYRTTPESLDIYGMMAQMRDAGCRQAVMEVSSHGIDQQRVA 191

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--- 257
           G++  A  FTNL RDH+DYH+T  AYF  K RLF           +   D      +   
Sbjct: 192 GLQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKVAVVNFDDPYGVTLAAS 251

Query: 258 -KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            KR H +   V         +  + V          +   G   +   PL G + V N L
Sbjct: 252 LKREHQSAKLVTFGENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRYNVSNLL 311

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A      +G D  + L  L     VPGR E +    +   + VDYAHT ++L   L  +
Sbjct: 312 AAIAAAWGLGRDPFVFLARLRAFKGVPGRMERI-DEGQPYNVLVDYAHTDDALRNALGML 370

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R IT GR+ VVFGCGG+RD+ KRP+M K   + AD A  T DNPR+E   +I  ++  G+
Sbjct: 371 RAITPGRLFVVFGCGGNRDRTKRPLMVKAVQEFADFAFATADNPRAEPLPQIFDDMKAGV 430

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     +R  AI  A++     D L++AGKGHE+     +       D  ++RE++
Sbjct: 431 LAPEKITWIEDRRRAISLALDAAKAGDCLLIAGKGHESYQEFAD-TVIPFDDRQVVRELI 489

Query: 494 GL 495
           G+
Sbjct: 490 GI 491


>gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
 gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
          Length = 486

 Score =  332 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 247/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG       ++
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+  ADD     +++                    +       + +   + + G
Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G F  YN L   G  +++G D   VL  L  L  V GRFE    +  G  
Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + +REI  
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482


>gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
 gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
          Length = 483

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 157/504 (31%), Positives = 241/504 (47%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+    P  I       +   + +I  V+ DSR I  G +F+A+ G + DGH FI
Sbjct: 1   MKLKELLKGIHPTTI-------IGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AI QGA AI+  +           ++    +VV +T       A+  YG       ++
Sbjct: 54  PKAIEQGASAILCET------IPEQQKAGVTYIVVSSTEDAAGKVATIFYGNPSMRLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G     +    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNMFRKFGYKCGLLSTVCNYIEEEAVPADHTTPDPIALNQLLHRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +E SSH + Q R+ G+    G FTNL RDH+DYH+T   Y NAK   F + 
Sbjct: 168 AESGCEYVFMECSSHAIAQKRISGLHFSGGIFTNLTRDHLDYHKTFDNYRNAKK-AFFDS 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK S AI  ADD     +++                    + +        ++     G
Sbjct: 227 LPKSSFAITNADDKNGMYMVQNCKATIKTYSLRNMADFKAKILECHFEGMYLEIDGREVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  + +G     +L  +  L  V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGTAMMLGKQPEDILLAMSTLKSVSGRLEPIR-SQEGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRP+M + A   +D  I+
Sbjct: 340 AVVDYAHTPDALANVLNAIHEVLDGKGKVITVCGAGGNRDKGKRPLMAQEAAKQSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP+ I  +++ G+        +   +R EAIRTA+ M  + DV+++AGKGHE
Sbjct: 400 TSDNPRDEDPQSIIDDMLAGLNMQQRKKTLSIVDRKEAIRTAVMMAERGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   +  G K    D + +  +  
Sbjct: 460 TYQEIK-GVKHHFDDKETVSALFN 482


>gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 496

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 153/511 (29%), Positives = 232/511 (45%), Gaps = 36/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L        I                 ++ DSR +Q G +F+ + G+  DGH + 
Sbjct: 1   MLLKKLATYFMTSQIRGDGETSC-------TGIAIDSRKVQPGDLFICLPGHTVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA  QGA A+VV                 P L V ++R+ +++     +G       ++
Sbjct: 54  RQAEEQGAAALVVER--------WLDDVALPQLKVKDSRQAMAVLGGVFFGAPSSRLKVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    +++I Q  G  +  IG      +        TTP  + L + L  +
Sbjct: 106 GVTGTNGKTTTTYLIERILQDQGRETGLIGTIQRRFAGQTYPMSGTTPESLELQQYLHDM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231
           +  G  +  +E SSH L Q R+ G +     FTNL +DH+DYH+T   Y  AK       
Sbjct: 166 AEGGGEYCVMEVSSHALAQGRVKGTRFRTAVFTNLTQDHLDYHKTMDEYRWAKGLFFSRL 225

Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              + E   + S A++  DD  S    K+             Q   +    +        
Sbjct: 226 GNTYAENPEERSYAVLNVDDPASAYFAKQTAAEVITYGV--EQDADVRASNISITARGTS 283

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +       D    + G+F VYNAL A    +  GI    +   LE +  V GR E V 
Sbjct: 284 FHVDTFRGSADISLRMVGKFNVYNALAAISATLLEGIPLEQIKASLESVKGVEGRVEAV- 342

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + LE +L+ +     GR+I VFGCGGDRD+ KRPIMG+IA   A
Sbjct: 343 DEGQDFAVIVDYAHTPDGLENVLRTVNEFAKGRVICVFGCGGDRDRKKRPIMGQIAAKYA 402

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  +VT DNPR+EDP+ I  +I  G+         +    +R EAI  AIEM +++DV++
Sbjct: 403 DYVLVTSDNPRTEDPQAILRDIEQGLVEDGVDQARYELIVDRREAIGKAIEMASREDVVL 462

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AGKGHET  ++ +       D  + +E + 
Sbjct: 463 IAGKGHETYQLIGSKVLD-FDDRIVAKEAIR 492


>gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_7]
          Length = 486

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 247/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA AIV   A       + +      +VV ++ + L L  SR YG       ++
Sbjct: 54  DSAIEKGAVAIVCEEA------PSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSGKLVLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+  ADD     +++                    +       + +   + + G
Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G F  YN L   G  +++G D   VL  L  L  V GRFE    +  G  
Sbjct: 283 REVM--VHFVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + +REI  
Sbjct: 460 DYQEIK-GVKHHFDDREKLREIFS 482


>gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 489

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 192/479 (40%), Positives = 268/479 (55%), Gaps = 10/479 (2%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P+     +I+ +++DSR I+ G IF A+ G K DG  FI  A+  GA A++  +     
Sbjct: 14  LPILPENPEISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAAAVLAPTDTQWP 73

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
               T     P+++  N R  L+L A+ L G  P+++ A+TGT+GK+S A F++QI    
Sbjct: 74  TGVPT----CPLILAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFIRQIWALQ 129

Query: 141 GLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G  +  IG      +         LTTP P+ LA  L+ L+  G  HV++EASSHGL+Q 
Sbjct: 130 GFKAAAIGTLGLTGAEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEASSHGLEQG 189

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS--KE 255
           RLDG+ L A  FTNL RDH+DYH T +AY  AK++LF+ LLP+++ A   AD      + 
Sbjct: 190 RLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANADMDAQTLQA 249

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +   A     R+  VG QG  + L    A+   Q+++I   G     L P+PG FQ  N 
Sbjct: 250 IRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPIPGRFQADNV 309

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A  L      + A +L  L  L  V GR E       G   YVDYAHT ++L  +L +
Sbjct: 310 LLAVALAAQDDAEIADILPLLPHLKGVRGRLERATVLPNGACAYVDYAHTPDALARLLAS 369

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    G+++VV G GGDRD GKRP+MG+ A+  ADIAI+TDDNPR+E+P  IRAEI  G
Sbjct: 370 LRPHARGKLVVVLGAGGDRDSGKRPLMGQEAIKGADIAIITDDNPRTENPASIRAEIKAG 429

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            P  +E  +R +AI  A+ ML   DVLVVAGKGHE   I+ N       D  ++R + G
Sbjct: 430 APQALEIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGN-TILPFDDAAVLRTLAG 487


>gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7425]
 gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425]
          Length = 501

 Score =  332 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 244/500 (48%), Gaps = 14/500 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     E+     +      +R+I  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLRELLTAVQSEITLIGDLPCHPALDREITSLSTNSWACQPGSLFIGMPGTRVDGGNFW 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI+         +A           +   ++ V +  +     A+ LY    +   ++
Sbjct: 61  ASAISA-----GAVAALVSAAVPLPDPAEACVIPVQDVSRACGAIAAALYNYPTQRLKLV 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ +  ++G  +  +G   T     Q+    TTP  + L   L+  
Sbjct: 116 GVTGTNGKTTTTHLIEYLLNQTGQPTALLGTLYTRWPGYQETAVHTTPFAVELQGQLASA 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH L Q R+ G     G FTNL +DH+D+H+  + YF+AK  LF   
Sbjct: 176 VKAGCPFAVMEVSSHALAQGRVQGCTFQVGVFTNLTQDHLDFHKDLEDYFSAKALLFSPG 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 AII  DD Y + ++++   A     S        + + +  + N  +  +    
Sbjct: 236 -YLSGKAIINQDDPYGQRLIQQLEPAQVWTYSTSDSTADFYTRDLNYLANGVEGILHTPE 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
            +  F  PL G+F V N L A G  +++G++   +   L +   VPGR + V     +  
Sbjct: 295 GEIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPSQDI 354

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +L+  R     R+I VFGCGGDRD+ KRP MG IA  LAD  +VT
Sbjct: 355 SVIVDYAHTPDSLENMLRAARPFVKHRMICVFGCGGDRDRTKRPKMGGIAAQLADQVVVT 414

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I  +I+ G+P     I +G+R +AI+TAI      D +++AGKGHE   
Sbjct: 415 SDNPRTEDPQRILEDILTGVPDGVNLIVEGDRRKAIQTAILNAQPGDSVLIAGKGHEDYQ 474

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  +  L
Sbjct: 475 ILGT-EKVHFDDREEAQAAL 493


>gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 483

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 148/505 (29%), Positives = 237/505 (46%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+DL+   D  E+              +I  + +DSR   AG  F+A+ G + DGH +
Sbjct: 1   MKLKDLLKGIDIVEIKGN--------ENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  A+  GA+ ++            T R     + V ++       A+  YG     +  
Sbjct: 53  INNALDLGAKVVIHQEKVD------TSREGITYIKVKDSADAAGKIATLWYGDPSAKLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++ A+ + ++ ++ G     +   +            TTP P+ L + L+ 
Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKFGNKVGLLSTVANYIDGTVYHATHTTPDPLSLNEMLAK 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  +  +E SSH + Q R+ G+K   G FTN+ +DH+DYH+T   Y  AK   F+ 
Sbjct: 167 MVDAGCEYAFMEVSSHAIHQKRISGLKFDGGIFTNITQDHLDYHKTMAEYLKAKKMFFDN 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP+ + A+  ADD     +++                    + +            +VE
Sbjct: 227 -LPETAFALTNADDKNGAVMLQNTKAKKYTYSVKTLADFKAKIIEKHFDGT------AVE 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F VYN L   G  + +G D    L  L  L  V GRFE +  +    
Sbjct: 280 FNNKELQVQFVGVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLR-SPENY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L+ I  +   +GR+I V GCGG+RD+ KRPIM + A+ L+D  I
Sbjct: 339 TAIVDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLSDQVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  ++  G     +   +    R +AI+TA  +  + DV+++AGKGH
Sbjct: 399 LTSDNPRFEEPQAIINDMADGLNSQQMKKTLLIVEREQAIKTACTLAKEGDVILIAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    V  G K    D +++R I G
Sbjct: 459 EDYQDVK-GVKHHFDDREVVRNIFG 482


>gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
 gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
          Length = 489

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 206/499 (41%), Positives = 294/499 (58%), Gaps = 15/499 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M++++L      +L+  ++      +     I  ++SDSR +  G +FVA+ G K DG  
Sbjct: 1   MRMRELEAGTMADLLALIAGHARLERGGSVPIAAITSDSRKVGPGTLFVAVPGTKADGAR 60

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A+A+GA A+++    +  D       + P++   + R+ L+L A+RL+ + P+ I+
Sbjct: 61  FIPDALAKGAAAVLMEPTGAPPDM------DVPLVFSLDVRRSLALAAARLHPRQPQTIV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK+SVA FV+QI    G+ +  +G    I+   +    LT+P P+ L   L  L
Sbjct: 115 AVTGTAGKTSVAEFVRQIWAHLGIPAAYMGTLGLIAPGESSYGGLTSPDPVDLHATLDRL 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G+TH+++EASSHGLDQ RL+G++L AG FTNLGRDH+DYH T +AYF+AK+RLF EL
Sbjct: 175 AGAGITHMALEASSHGLDQRRLEGVRLAAGGFTNLGRDHLDYHPTVEAYFHAKLRLFTEL 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P  +PAI   D  Y    +  A   G    ++G  G    + +V A    Q++  +   
Sbjct: 235 MPDGAPAIAALDAPYGATTLAFARTRGLPTFAIGATGDL-KVTEVVAEGTSQRIRFADRP 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PL G FQ  NAL+AA L  A G+     L  L  L  VPGR E +G +     
Sbjct: 294 EIL---LPLVGRFQADNALLAASLVAAGGVPLDDALSALPHLKGVPGRLERIGHDPA-RP 349

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           ++VDYAH   +LE +L  +R  T+GR+I +FGCGGDRD+GKRP+MG IA   AD+ IVTD
Sbjct: 350 VFVDYAHKPEALETVLDTLRAATAGRLIALFGCGGDRDRGKRPLMGAIAAAKADVVIVTD 409

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSEDP  IRAEI+   PG +E G R EAIR  + M+   DVL+VAGKGHET  I+ +
Sbjct: 410 DNPRSEDPSAIRAEILAAAPGALEIGAREEAIRAGVAMMGAGDVLLVAGKGHETGQIIGD 469

Query: 478 GEKKMSVDCDIIREILGLI 496
                  D   +   LG +
Sbjct: 470 -RTYPFSDTAAVLAALGEV 487


>gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 495

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 189/478 (39%), Positives = 269/478 (56%), Gaps = 4/478 (0%)

Query: 15  INQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           ++ L + P+  R  +I    ++ DSRH++ G++F A+ G+   G  F+P A+A GA AI+
Sbjct: 8   LSALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAIL 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A +     A   S   ++V ++ R+ L+  A+  +G+ P  ++AVTGT+GK+SVA+F
Sbjct: 68  TDAAGAALAREALQGSTAALIVAEDPRQALAGAAALWFGRQPATMVAVTGTNGKTSVATF 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +QI    G ++  IG T    +FA  +  TTP PI L + L+  +  GVTH ++EASSH
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLADAAEAGVTHAAMEASSH 187

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RLDG+ L A  FTN  +DH+DYH+T +AYF AK  LF  +LP E   ++  DD  
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTVVNLDDPR 247

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             E+   A + G +V+  G+  +    L         Q +  S +G       PL G FQ
Sbjct: 248 GPEIAALARDRGQKVIGTGFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTRLPLIGGFQ 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            +N  VAAGL I  G     V     +L  V GR +   T   G  ++VDYAHT ++L  
Sbjct: 308 AWNVAVAAGLAIGAGDAPERVFATFPQLQGVRGRMQLAATRQNGASVFVDYAHTPDALAT 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            LK +R    GRIIVVFG GGDRD+GKRP+MG+ A D AD+  VTDDNPR+EDP  IR  
Sbjct: 368 ALKALRPHVMGRIIVVFGAGGDRDRGKRPLMGRAAADHADVLYVTDDNPRTEDPAAIRRA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I+   P   E G+R EAI   ++ L   D L++AGKGHE   IV   +     D +  
Sbjct: 428 ILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKGHEAGQIVGT-DIFPFDDAEQA 484


>gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
 gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
          Length = 495

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 149/511 (29%), Positives = 237/511 (46%), Gaps = 37/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQ L       L+    +      +     + +DSR +Q G +F+ + G   DGH + 
Sbjct: 1   MQLQQL-----ASLLAVSRVMGDGTVDC--RGIGADSRRVQPGDLFLCLPGFTVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+A GA A+VV     +           P LVV + R  +++ A  ++      +  +
Sbjct: 54  GQAVASGAAALVVERELDVP---------VPQLVVKDARHAMAVLADYMFDSPSRRMRMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++   +++I Q +G+++  IG      +  +     TTP  + L + L  +
Sbjct: 105 GITGTNGKTTITYLIEKIMQDAGVNTGLIGTIQMRYNGQSYPMSGTTPEAVELQRYLGNM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231
           + QGV    +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK       
Sbjct: 165 AEQGVQCCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRL 224

Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F         A++ ADD  S  +  +                     ++        
Sbjct: 225 GNAFSRDASNSKYAVLNADDPASSYLQAQTAAQVITYGVEKDSDV--QASRITISAKGTS 282

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +S    + D    + G+F VYNAL A    +  GI    +   LE +  V GR E V 
Sbjct: 283 FHVSTFKGETDIELRMVGKFNVYNALAAISAALLEGISLVDIKRSLESIAGVDGRVEPVD 342

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VDYAHT + LE +L+ ++   +G++  VFGCGGDRD+ KRP+MGKIA   +
Sbjct: 343 AGQ-PFAVIVDYAHTPDGLENVLRTVKEFATGKVWCVFGCGGDRDRTKRPLMGKIAARYS 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D + +T DNPR+EDP  I  +I  G+         +    +R  AI  A+EM +  DV++
Sbjct: 402 DHSFITSDNPRTEDPIVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVVL 461

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AGKGHET  ++         D  + +E + 
Sbjct: 462 IAGKGHETYQLIG-KTVHEFDDRIVAKEAIR 491


>gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Heliobacillus mobilis]
          Length = 528

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 165/512 (32%), Positives = 252/512 (49%), Gaps = 31/512 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFP----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M+L  ++       I           +   +++I+ ++ DSR +  G++F  I G K DG
Sbjct: 23  MELSKVLANVEVREIRWTGETDDLQRLMQPKQEISGLAYDSRQVAPGFLFFCIPGQKTDG 82

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F  QA+  GA  +VV     L+          P + V +TR+ L+L A   YG   E+
Sbjct: 83  HNFAAQAVEGGAAVLVVERFVDLK---------VPQIRVTSTRESLALAAGAFYGHPSEH 133

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKA 173
             ++ VTGT+GK++    ++ + +  G S   IG               TTP    L K 
Sbjct: 134 LLMIGVTGTNGKTTTTYMIEAVLKAKGYSVGVIGTIGNQLGEKRWPAAHTTPESSDLQKL 193

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +   G   V +E SSH LDQHR+ G+     +FTNL +DH+DYH T + Y  AK +L
Sbjct: 194 LAEMRDDGADAVVMEVSSHSLDQHRVLGVNFDIAAFTNLTQDHLDYHHTLENYRAAKGKL 253

Query: 234 FEELLPKESP------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           F EL  KES       A+I ADD  +   ++ +                     V     
Sbjct: 254 FRELGQKESKKGIVKRAVINADDPSADYFLQVSSVPAVTYGVEEDAAIRAKDWDVTPQGA 313

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             + T+   G   D    L G F + N+L A  +   +G++   ++E L+ L  VPGRFE
Sbjct: 314 --RCTVQYPGGTVDMTLQLTGRFNISNSLAAFTVGWIVGMEPEQIVEALQSLRGVPGRFE 371

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V        + VDYAHT + L  +L     +  G+I+ VFGCGGDRD+ KRPIMG +  
Sbjct: 372 SVDQGQ-PFSVIVDYAHTPDGLVNVLNTAEALAEGKIVTVFGCGGDRDRTKRPIMGAVVA 430

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVL 462
           +++DIA+VT DNPR+E+P +I  +I+ G+       +  + +R +AI  A+ M N  D++
Sbjct: 431 EMSDIAVVTSDNPRTENPHRIIEDILPGVQAVPGIEYKVEPDRKKAIALALSMANPGDLV 490

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++AGKGHE   IV   E     D ++ R++L 
Sbjct: 491 MIAGKGHENYQIVG-KEVLPFDDREVARQVLR 521


>gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
 gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
          Length = 489

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 189/479 (39%), Positives = 267/479 (55%), Gaps = 10/479 (2%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P      +I+ +++DSR ++ G +F A+ G K DG  FI  A+  GA A++  +     
Sbjct: 14  LPALPGNPEISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAAAVLAPADTQWP 73

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
               T     P+++  N R  L+L A+ L G  P++++A+TGT+GK+S A F++QI    
Sbjct: 74  ----TDVPACPLVLASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFMRQIWALQ 129

Query: 141 GLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G  +  IG      +         LTTP P+ LA  L+ L+  G  HV++EASSHGL+Q 
Sbjct: 130 GFKAAAIGTLGLTGAEETSISFPALTTPDPVALANGLAALTQAGFQHVALEASSHGLEQG 189

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS--KE 255
           RLDG+ L A  FTNL RDH+DYH T +AY  AK++LF+ LLP+ + A   AD      + 
Sbjct: 190 RLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANADMDAQTLQA 249

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +   A     R+  VG  G  + L    A+   Q++TI  +G+    L P+PG FQ  N 
Sbjct: 250 ICAIAARRNLRLRLVGEHGTTLRLVAYNALPAGQELTIEHDGRTSTVLLPIPGRFQADNV 309

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A  L      +   +L  L  L  V GR E       G   YVDYAHT ++L  +L +
Sbjct: 310 LLAVALAAQDNAEITRILPLLPHLKGVRGRLERATVLPNGACAYVDYAHTPDALARLLAS 369

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    G++IVV G GGDRD GKRP+MG+ A+  ADIAI+TDDNPR+E+P  IRA+I  G
Sbjct: 370 LRPHARGKLIVVLGAGGDRDSGKRPLMGQEAVKGADIAIITDDNPRTENPASIRADIKTG 429

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            P  +E  +R +AI  A+ ML   DVLVVAGKGHE   I+ N       D  ++R + G
Sbjct: 430 APQALEIADRKQAIAEALSMLKADDVLVVAGKGHEQGQIIGN-TILPFDDAAVLRTLAG 487


>gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
 gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
          Length = 482

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 162/493 (32%), Positives = 264/493 (53%), Gaps = 18/493 (3%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   ++  L    ++  +++I ++  DSR ++ G +FV I G   DGH +  +A   GA+
Sbjct: 2   DLSLILKSLEYSFVKEDKKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNGAK 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV            +   +  I+ V ++RK L++ AS  YG   +   I+ +TGT+GK+
Sbjct: 62  VIVCEKDLE----DLSCYKDCTIIKVPDSRKALAIMASNYYGTPSKHIKIIGITGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ I +++G     +G   + I +   ++  TTP  + L K    +  + V +  
Sbjct: 118 TSTFMMKAILEKAGYKVGLLGTIANYIGNKKIESNRTTPESLELQKLFKDMVDEKVDYCV 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++     FTNL +DH+D+H+T + YFN+K+ LF+         +I
Sbjct: 178 MEVSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNS----VI 233

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD+Y ++V+K+A   G +V     +   +  + +       +     + +       +
Sbjct: 234 NIDDSYGEKVLKKAL--GNKVTYGVEKSCDLKAENLHMHSRGVEFDTIFKNEKETIALNI 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT 365
           PG++ +YNAL + G C+  GI    + E L  + V PGR E V  N   G  + VDYAHT
Sbjct: 292 PGKYNIYNALGSIGACLLEGISLQTIKEALGDISV-PGRCEIVTKNYDLGYDVIVDYAHT 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE IL   R  T GR+I V+GCGGDRD+ KRPIMGK+  DL+DIAI+T DNPR+EDP
Sbjct: 351 PDGLENILATAREFTKGRLISVYGCGGDRDRTKRPIMGKVGSDLSDIAIITSDNPRTEDP 410

Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             I  +++ GI    +I    R +AI+ A+E+  + DV+VVAGKGHE   I+ +      
Sbjct: 411 SLIIKDVLEGIEKDNYIVVEGRRDAIKKAMEIAKENDVIVVAGKGHEDYQILKD-RTIHF 469

Query: 484 VDCDIIREILGLI 496
            + ++I E++  I
Sbjct: 470 DEREVIEELIKEI 482


>gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 493

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 156/495 (31%), Positives = 248/495 (50%), Gaps = 9/495 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      + +    +         ++E+  DSR +Q G  FVA+VG+  DG  FI  AI 
Sbjct: 1   MTKAISMDALLSPWVDCPSLASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++  +       +  I  + P++ +D   K LS  A +LY      ++ VTGT+G
Sbjct: 61  KGANAVIAQACDVKAHGTIDIIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q     G  +  +G T        ++   TT + + +   L+ L+ Q   +
Sbjct: 121 KTTITQLIAQWIGLVGSKAAVMGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T + Y NAK+ LF +    +  A
Sbjct: 181 TALEVSSHGLIQGRVKSLSFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCDQ--A 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD       K+  NA              +   +V    +   +    +  +    
Sbjct: 239 IINVDDEVGAAWAKQLTNAIAVSLAPTTEFKHALWASQVAYAESGITIRFDGQFGEGTLH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G D + +L    +L  V GR E     +R  ++ VDYA
Sbjct: 299 APLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQAENR-AKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I  +++ G+      I + +R +A+  A+E    QD++++AGKGHE    + NGE 
Sbjct: 418 DPVFIVKDMLAGLSKPAEAIVQHDRFKALSYALENAAPQDIILLAGKGHEDYQ-IRNGET 476

Query: 481 KMSVDCDIIREILGL 495
               D +   ++LGL
Sbjct: 477 IHYSDRESAMQLLGL 491


>gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 491

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 152/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADD  S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKANNIRITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   ++ + E     D    R  +   L
Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488


>gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
 gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
          Length = 485

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 164/506 (32%), Positives = 247/506 (48%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P  I+          E +I  V+ DSR I  G +F+A+ G + DGH FI
Sbjct: 1   MKLSELLKNITPIAIHG-------NAEVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI QGA A++      L+D   T+  N   + V++T       A+  YG       ++
Sbjct: 54  GKAIEQGAVAVL------LEDMPNTLNDNVTYVQVESTENTAGKVATLFYGDPSHKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +  G     +    + I   A     TTP PI L + L+ +
Sbjct: 108 GVTGTNGKTTIATLLYNMFREFGYKVGLLSTVCNYIDDKAIPADHTTPDPIELNQLLADM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E SSH + QHR+ G+      FTNL RDH+DYH+T + Y NAK   F+  
Sbjct: 168 VAAGCEYAFMECSSHAIHQHRIGGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K + AI  ADD     +++          +         + +        ++     G
Sbjct: 227 LSKHAFAITNADDKNGMIMVQNTKATIKTYSTKRMADFRAKILECHFEGMYLEIDGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G    +G  +  +L  L  L  V GR E +  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGAAKMLGKSTDEILLALSTLKSVNGRLEPI-QSPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++LE +L  I  +   +   II V G GG RD+GKRP+M + A+  +D  I
Sbjct: 340 AIVDYAHTPDALENVLTAIHDVLDNKGGHIITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EAIRTA  M  + DV++VAGKGH
Sbjct: 400 LTSDNPRDEDPQAIINDMMAGLDATQRKKVLNIVDRKEAIRTAAMMAKRGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           ET   + NG K    D ++IREI G+
Sbjct: 460 ETYQEI-NGVKHHFDDHEVIREIFGI 484


>gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 500

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 232/480 (48%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     GV   ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +A        +  +        V       ++       + +    L G F V N L A 
Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E             + VDYAHT ++LE  L+  
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes Clip81459]
 gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-064]
 gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 1816]
          Length = 491

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 152/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADD  S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   ++ + E     D    R  +   L
Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488


>gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 486

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 169/503 (33%), Positives = 266/503 (52%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ ++     EL+           + +IN+++ DSR +    +FV + G   DGH + 
Sbjct: 1   MNLKSILNGLDYELLQGT-------EDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+  GA+ IV+    ++ D          I+   +TRK L+L  +  YG   E +  +
Sbjct: 54  EKAVLNGAKVIVIQDDVNIDDKE------ITIVKCSDTRKALALMGANYYGNPSEKMKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G     IG  +            TTP  + L +    +
Sbjct: 108 GITGTNGKTTTAFMIKDILECAGKKVGLIGTIANYICGEKIHTERTTPESLELQELFGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +  +E SSH L   R+ G+K   G FTNL RDH+D+H+T + Y++AK +LFE  
Sbjct: 168 VEKGVEYCVMEVSSHSLALDRVYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLFER- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  +I  DD Y  +V+K         +     +    +      + ++      V 
Sbjct: 227 ---SCIKVINVDDNYGIQVLKDCQKLNAENIYSFSVKSDSDYKAYDELMGSRDIKFKVVL 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-G 355
            ++ +F+  +PGE+ +YNAL A G+C  +GI    + E +E   V PGR E VG      
Sbjct: 284 DEEEEFILGIPGEYNIYNALGAIGVCHKMGIAIEAIKEGIENALV-PGRCERVGKEYNLP 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I +DYAHT + LE ILK  +  T G++I +FGCGGDRD+ KRP MGKI +D+AD+A++
Sbjct: 343 YEIIIDYAHTPDGLENILKTAKAFTKGKLIAIFGCGGDRDKVKRPQMGKIGIDIADLAVI 402

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPRSEDP  I  +I  G+    +I   NR +AI+ AIE+  K DV+V+AGKGHET  
Sbjct: 403 TSDNPRSEDPMAIIEDIKAGLDKDNYIIIENRHDAIKKAIELAEKDDVIVIAGKGHETYQ 462

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+ + +     + ++++EIL  I
Sbjct: 463 ILKD-KTIHFDEREVVKEILDNI 484


>gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
 gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
          Length = 511

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 159/500 (31%), Positives = 241/500 (48%), Gaps = 22/500 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  ++ +   E    L         RK+  ++ +S+ +Q   +FVA+ G + DGH FI Q
Sbjct: 12  LTRVLQRLERE--GLLQTVVGSATARKLTHLTDNSQEVQPRGLFVAVRGERVDGHRFIEQ 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI +GA A+V      + +  A        + V N+R+ L + A+  +      +  + +
Sbjct: 70  AIERGAVAVVGE---FVPEAFAERFPKASFVQVSNSRRALGILATIFHMNPARRLRLIGI 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++ A  V  +    G  +  IG               TTP PI L   L  ++ 
Sbjct: 127 TGTNGKTTTAFLVYHMLNAIGQETGLIGTVCYRFGRHELPASNTTPGPIELNHLLRRMTG 186

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               +  +E SSH L+Q R+ G+      FTNL RDH+DYH + +AY  AK +LF+  L 
Sbjct: 187 VPCKNCVMEVSSHALEQERVAGLSFSIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDG-LT 245

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + A+   DD     ++                   + +             +++    
Sbjct: 246 FRATALYNIDDPSGPAMVADTQACCISYGQREDAQIRMRIVGHSLEG------LTLNIDG 299

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               FPL G F  YN L A G+  A+G+D  L+LE L ++  +PGRFE       G    
Sbjct: 300 RFQRFPLVGCFNAYNLLAAYGVGRAMGLDPDLLLEALGRVPQIPGRFERFTFED-GTTAI 358

Query: 360 VDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++LE +L+ IR +     R+  VFGCGG+RD+GKRP+MG +A  LAD  IVT 
Sbjct: 359 VDYAHTPDALENVLRTIREVMPEGARLWCVFGCGGERDRGKRPMMGAVAERLADCVIVTS 418

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSEDP +I  +I  G+      + + +R  AI  A ++    DV++VAGKGHE   I
Sbjct: 419 DNPRSEDPLQIFEDIRQGMRHPEAALWEVDRARAIEQAAKLCRPGDVVLVAGKGHEAYQI 478

Query: 475 VTNGEKKMSVDCDIIREILG 494
           +   EK    D  +++E   
Sbjct: 479 IGT-EKIPLDDRQLVQEYFE 497


>gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL N1-067]
          Length = 491

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 145/508 (28%), Positives = 229/508 (45%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+                     ++++++ DSR +  G +F+ I G   DGH F 
Sbjct: 1   MKLNELMQAIPV-------FTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA A++      +           P++ V +T++ +++ A+  YG   +   ++
Sbjct: 54  KKAEELGAVAVIAEKPIEVA---------IPVIYVRDTKRAMAMLANYFYGSPTQALKLV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+QI + SG  +  IG     I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             +GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK       
Sbjct: 165 LLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                      A++ ADD  S  +                         +    +     
Sbjct: 225 GNSYHASNPKIAVLNADDEESVRMQTATAAHVITFGIKENADF--RATNIEITSHGSTFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++     F     + G F VYN L A     A+ I     +  +E +  V GRFE V   
Sbjct: 283 LTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELV-NA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDY+HT + L  +L+ I    + R+ VV GCGGDRD+GKRP M KIA+  A  
Sbjct: 342 GQDFPVIVDYSHTPDGLLNVLQTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYATN 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + T DNPRSE+P  I  ++I G+P    ++   NR +AI+ AI      DV+++AGKGH
Sbjct: 402 PVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497
           E   I+ + E     D    R  +   L
Sbjct: 462 ENYQIIGD-EVINFDDRVEARLAIEKRL 488


>gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
 gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
          Length = 491

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 151/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADD  S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      D++++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   ++ + E     D    R  +   L
Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488


>gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteroides fragilis NCTC 9343]
          Length = 485

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 151/507 (29%), Positives = 247/507 (48%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR +++G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+ +GA AI+        +  A +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK S ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485


>gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae Rd KW20]
 gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
 gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae Rd KW20]
 gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
          Length = 488

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 238/488 (48%), Gaps = 13/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
           +  S +  +     N P++        LS  A   Y     N  ++ VTGT+GK++++  
Sbjct: 64  TELSSEHLTVAFIGNVPVVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTGTNGKTTISQL 123

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q  +  G  +  +G           + + TT S + +  +LS     G    S+E SS
Sbjct: 124 LAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSAFKHAGADFTSIEVSS 183

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL QHR++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD 
Sbjct: 184 HGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDE 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              + +    +A    ++  ++    +++    +        +T      +     PL G
Sbjct: 242 IGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++
Sbjct: 302 AFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKP-TVIVDYAHTPDA 360

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I
Sbjct: 361 LEKALIAAREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTESQSQI 420

Query: 429 RAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G           +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D
Sbjct: 421 ETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSD 479

Query: 486 CDIIREIL 493
            +I  + L
Sbjct: 480 QEIALDFL 487


>gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 495

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 151/497 (30%), Positives = 240/497 (48%), Gaps = 26/497 (5%)

Query: 12  PELINQLSIFPM----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +L + L++ P        ++ I +V++DSR + AG +F+ + G   DGH F+  A  +G
Sbjct: 3   KQLASLLALLPQAEVIGSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A A +V       D  A +     ++ V +TR+ + L     Y        ++ VTGT+G
Sbjct: 63  AVAALVE------DVPAEVPQGVTLIKVADTREAMELVTPYFYDYPGRKLRMIGVTGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  + ++ I +++G     IG  + + +    ++  TTP  + L K L  +   G  +
Sbjct: 117 KTTSTNIIRLILRKAGYKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDY 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKE 241
             +E SSH L   R+ GI+      TN+ +DH+D+H+T + Y +AK        +     
Sbjct: 177 CVMEVSSHALALKRVAGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPN 236

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A+   DD  S  + +R                 I+           Q+ +     + D
Sbjct: 237 KNAVFNMDDPSSAIIRERTKANVL--TYGEGHDNDIYPLSFTVEPKHMQLLLHTPVGEMD 294

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GEF VYN +   G  +A  ID  ++   L+    VPGRF+ V    +   + VD
Sbjct: 295 LELKITGEFNVYNVMGVIGAMLAENIDKDIIGSVLDGFDGVPGRFQLV-EAGQPYTVIVD 353

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + LE +LK  R+IT G++ VVFGCGGDRD  KRP+MG +AL+LAD  +VT DNPR
Sbjct: 354 YAHTPDGLENVLKTARSITRGKLWVVFGCGGDRDNKKRPLMGALALELADNIVVTSDNPR 413

Query: 422 SEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDPE I  EI   +             +R EAI  A+      DV+++AGKGHE   I+
Sbjct: 414 TEDPELIIDEIFTALQNVPAGKHVTRLSDRREAICYALAEAADNDVILIAGKGHENYQIL 473

Query: 476 TNGEKKMSVDCDIIREI 492
            +       D +++ E 
Sbjct: 474 KD-RTIHFDDKEVVMEY 489


>gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 10329]
          Length = 493

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 156/495 (31%), Positives = 248/495 (50%), Gaps = 9/495 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      + +    +         ++E+  DSR +Q G  FVA+VG+  DG  FI  AI 
Sbjct: 1   MTKAISMDALLSPWVDCPSLASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++  +       +  I  + P++ +D   K LS  A +LY      ++ VTGT+G
Sbjct: 61  KGANAVIAQACDVKAHGTIDIIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q     G  +  +G T        ++   TT + + +   L+ L+ Q   +
Sbjct: 121 KTTITQLIAQWIGLVGSKAAVMGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T + Y NAK+ LF +    +  A
Sbjct: 181 TALEVSSHGLIQGRVKSLSFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCDQ--A 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD       K+  NA              +   +V    +   +    +  +    
Sbjct: 239 IINVDDEVGAAWAKQLTNAIAVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G D + +L    +L  V GR E     +R  ++ VDYA
Sbjct: 299 APLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQAENR-AKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I  +++ G+      I + +R +A+  A+E    QD++++AGKGHE    + NGE 
Sbjct: 418 DPVLIVKDMLAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKGHEDYQ-IRNGET 476

Query: 481 KMSVDCDIIREILGL 495
               D +   ++LGL
Sbjct: 477 IHYSDRESAMQLLGL 491


>gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Bacteroides fragilis 638R]
          Length = 485

 Score =  331 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 152/507 (29%), Positives = 247/507 (48%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR +++G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+ +GA AI+        +  A +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK S ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485


>gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
 gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
          Length = 493

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 157/506 (31%), Positives = 239/506 (47%), Gaps = 34/506 (6%)

Query: 1   MKLQDLI---YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MKLQ+L+     +  ELIN+            I  +  DSR ++ G +FV I G   DGH
Sbjct: 3   MKLQELLTYFKSENNELINE---------NPDITSIEMDSREVKKGSLFVCIKGYTVDGH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            +  +A+  GA AIV     ++ +         P+++V ++++ L+  A   Y +    +
Sbjct: 54  DYAEKAVKSGATAIVAEHPLNITE--------VPVIIVKHSQRALARIADAFYEQPTHKL 105

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKAL 174
             + +TGT+GK+S    ++Q+ +++   +  IG      +    D + TTP  + L K  
Sbjct: 106 NLIGITGTNGKTSTTHMIEQMMRKAEKKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTF 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  Q V    +E SSH L   R+ G       FTNL +DH+DYH T + Y +AK  LF
Sbjct: 166 KQMLDQDVDTAIMEVSSHALHLGRVHGCDYDIAVFTNLTQDHLDYHNTMEEYKHAKSLLF 225

Query: 235 E-----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                     K   AI+ ADD  S    K                     K +  +    
Sbjct: 226 SQLGSAFHHNKPKHAILNADDEASSYFEKVTAAEVMTYALERKADVM--AKNIQIMPKGT 283

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           Q  +            L G+F VYN L A  + I  G+    ++  +E+L  V GRFE V
Sbjct: 284 QFDLVTPIGTKKVTVALVGKFNVYNILAAVSVGIVSGLTFETIVSAIEELEGVKGRFELV 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +     + VDYAHT +SLE +L   + +T G+I  V GCGGDRD+ KRP M +IA+  
Sbjct: 344 NCDQ-DFPVIVDYAHTPDSLENVLTTCKELTEGKIFCVIGCGGDRDKTKRPQMAQIAVKY 402

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  + T DNPRSEDP  I  ++ +G+P   +    NR +AI  AI    K D +++AGK
Sbjct: 403 ADEPVFTSDNPRSEDPSAILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGK 462

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET  I+ + +     D  +  + +
Sbjct: 463 GHETYQIIDD-QVYDFDDAKVAIDAI 487


>gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 500

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          QD   TT S I + + L+     G    ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +A        +  +        V       ++       + +    L G F V N L A 
Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E             + VDYAHT ++LE  L+  
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 10403S]
          Length = 491

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 153/509 (30%), Positives = 238/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADDA S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAKKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   ++ + E     D    R  +   L
Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488


>gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 493

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 156/495 (31%), Positives = 247/495 (49%), Gaps = 9/495 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      + +    +         ++E+  DSR +Q G  FVA+VG+  DG  FI  AI 
Sbjct: 1   MTKAISMDALLSPWVDCPSLASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++  +       +  I  + P++ +D   K LS  A +LY      ++ VTGT+G
Sbjct: 61  KGANAVIAQACDVKAHGTIDIIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q     G  +  +G T        ++   TT + + +   L+ L+ Q   +
Sbjct: 121 KTTITQLIAQWIGLVGSKAAVMGTTGNGFLDDLKEAANTTGNAVEIQHTLASLAEQQAQY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T + Y NAK+ LF +    +  A
Sbjct: 181 TALEVSSHGLIQGRVKSLSFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCAQ--A 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD       K+  NA              +   +V    +   +    +  +    
Sbjct: 239 IINVDDEVGAAWAKQLTNAIAVSLAPTTEFEHALWASQVAYAESGITIRFDGQFGEGTLH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G D + +L    +L  V GR E      R  ++ VDYA
Sbjct: 299 APLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQAEHR-AKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I  +++ G+      I + +R +A+  A+E    QD++++AGKGHE    + NGE 
Sbjct: 418 DPVLIVKDMLAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKGHEDYQ-IRNGET 476

Query: 481 KMSVDCDIIREILGL 495
               D +   ++LGL
Sbjct: 477 IHYSDRESAMQLLGL 491


>gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Listeria monocytogenes str. Scott A]
          Length = 494

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 152/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 4   MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 56  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 107 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 167 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 226

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADD  S  + K              Q        +    +    
Sbjct: 227 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSTF 284

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 285 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 344

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 345 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 403

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 404 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 463

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   ++ + E     D    R  +   L
Sbjct: 464 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 491


>gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 493

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 143/509 (28%), Positives = 231/509 (45%), Gaps = 36/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---EDGH 57
           MKL++L      +         +     +I  +  DSR I +G +F+ + G     ED H
Sbjct: 1   MKLKELTSLLLIK-------DTVGDMNIEITGLEMDSRKITSGNLFICVSGINGFLEDRH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F+  A+  GA A++V    +++          P ++V + R  +++ AS  Y      +
Sbjct: 54  QFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYDYPSNKM 104

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174
             + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L
Sbjct: 105 KLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + +Q V +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF
Sbjct: 165 QMMKNQNVDYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLF 224

Query: 235 EE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                      +  A++ ADD   +   K                     K +       
Sbjct: 225 SRLGNDLSTTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADV--QAKNITLSPKGI 282

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E +
Sbjct: 283 RFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKRIEGRMEII 342

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              ++   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   
Sbjct: 343 -DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSY 401

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++++
Sbjct: 402 SDFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVLI 461

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHET  I+ +       D +  R+ +
Sbjct: 462 AGKGHETYQILKDST-IHFDDKEKARQAI 489


>gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
 gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
          Length = 485

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 151/507 (29%), Positives = 246/507 (48%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR +++G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+ +GA AI+        +    +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAVEKGATAILCE------ELPVELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK S ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485


>gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes EGD-e]
 gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-561]
 gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e]
          Length = 491

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 154/509 (30%), Positives = 238/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADDA S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   +V + E     D    R  +   L
Sbjct: 461 HEDYQVVGD-EVIDFDDRVEARIAIEKKL 488


>gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 492

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 144/511 (28%), Positives = 230/511 (45%), Gaps = 40/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     +I  +  DSR I +G +F+ + G   DG    
Sbjct: 1   MKLKELASLLLIK-------DTVGDMNVEITGLEMDSRKITSGDLFICVSG--IDGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P +VV + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIVVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAK 172
            +  + +TGT+GK++ +  +++I    G  +  +G              + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTKDHLDYHGTFHEYKHVKGL 222

Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           LF           +  A++ ADD   +   K                     K +     
Sbjct: 223 LFSRLGNDLSTTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADV--QAKNITLSPK 280

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E
Sbjct: 281 GIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRME 340

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +   ++   + VDYAHT ++LE +L  I   ++G++I VFGCGGDRD  KR IMG IA 
Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTISEFSTGKVITVFGCGGDRDTKKRSIMGGIAG 399

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++
Sbjct: 400 SYSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAITHAINMASSNDIV 459

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHET  I+  G      D +  R+ +
Sbjct: 460 LIAGKGHETYQILK-GSTIYFDDKEKARQAI 489


>gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
          Length = 501

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 200/491 (40%), Positives = 278/491 (56%), Gaps = 10/491 (2%)

Query: 6   LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      +L++  + I      +  +  +S+DSR I  G +FVAI G   DG  FI  A+
Sbjct: 8   MTSLSLGQLLDGHARILSAGAGDEPVFGLSADSRRINPGDLFVAIPGTHADGSRFIADAV 67

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA A+++  A         +  +  +    + R  LSL A+R Y + P  I AVTGT+
Sbjct: 68  ARGASAVLMEPAAPRP----VLPPHVALAFSLDVRHSLSLAAARFYPRQPATIAAVTGTA 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVT 183
           GK+SVA F++QI +R G  +  +G    ++        LTTP P+ L   L  L+ +GVT
Sbjct: 124 GKTSVAFFLRQIWERLGHKAAYLGTIGLVAPDGSTYGSLTTPDPVELHATLDRLAGEGVT 183

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+++EASSHGLDQ RLDG+   AG FTNLGRDH+DYH T  AYF AK+RLF +++P ++ 
Sbjct: 184 HMALEASSHGLDQKRLDGVHFTAGGFTNLGRDHLDYHPTIDAYFRAKLRLFTQVMPDDAT 243

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+      ++   +  A   G ++L +G  G+   L       +     +          
Sbjct: 244 AVAVTGAPFAANALAWAETRGLKLLPIGE-GQATGLDIFGTTGSGTGQKVMFADGSHAI- 301

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G FQ+ NAL+AAGL IA G +    LE L  L  VPGR E +G + R   ++VDYA
Sbjct: 302 VPLVGRFQLDNALLAAGLAIACGAERPAALEALAYLTGVPGRLERIGDDPR-RPVFVDYA 360

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +L  +L  +R    GR++VVFGCGGDRD+GKRP+MG IA   AD+ IVTDDNPRSE
Sbjct: 361 HKPEALATVLDTLRAAVPGRLMVVFGCGGDRDKGKRPLMGAIAASKADVVIVTDDNPRSE 420

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           DP  IRAEI+ G  G  E G+R EAI+ A+ +L   D L+VAGKGHET  I+ +      
Sbjct: 421 DPAAIRAEILEGAHGAREIGDRAEAIKAAVALLQPGDALIVAGKGHETGQIIGD-RTYPF 479

Query: 484 VDCDIIREILG 494
            D   +R  L 
Sbjct: 480 SDAAEVRAALE 490


>gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 486

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 186/490 (37%), Positives = 268/490 (54%), Gaps = 13/490 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K    L +   + P + ++  +   + DSR ++ G++F A  G K +G  FI +AIA 
Sbjct: 4   TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIA- 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                  + A ++             LV +N R   +  A+R Y   P  + AVTGT+GK
Sbjct: 62  -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SVA   +Q    +G  +  IG      +  +    +TTP  +      S L+   ++HV
Sbjct: 115 TSVAELCRQFWMIAGHKAASIGTLGVITAENSYSLGMTTPDVVTFLSCCSDLARADISHV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EASSHGLDQ+R DG K+IAG+FT+  RDH+DYH T + Y  AK+RLF+E +  +  A+
Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           ++ADD  +K V+      G +++ +G + + I L    A    Q +T+S++G+ +    P
Sbjct: 235 VWADDPAAKTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIQGESYKIRLP 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G +Q+ NALVAAGL +A G D    +  L  L  V GR E    +  G  +YVDYAHT
Sbjct: 295 LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L   ++ +R  T GR+ VVFG GGDRD+GKRP MGKIA +LAD  IVTDDNPR ED 
Sbjct: 355 PDGLRAAIEALRPHTEGRLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 414

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKM 482
             IR EI+ G P   E G R EAI +AI+   K D++++AGKGHE   I+  GE      
Sbjct: 415 ATIRKEILVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 474

Query: 483 SVDCDIIREI 492
             D  + +E 
Sbjct: 475 FDDVTVAKEA 484


>gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
          Length = 485

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 152/505 (30%), Positives = 238/505 (47%), Gaps = 32/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+            +       R I  ++ DSR +Q G +FVA+ G + DGH +I
Sbjct: 3   MELDILLKSV-------SVVRVEGDTARNITGINMDSRLVQPGDLFVAVKGTQADGHAYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI +GA A+V  +      +          + V ++   +   ++  YG       ++
Sbjct: 56  GKAIEKGAVAVVCEA------WPEVQAEGVTYVQVKDSESAVGRLSTVFYGDPTSKLQLV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +  G          + I   A     TTP PI L + L  +
Sbjct: 110 GVTGTNGKTTIATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + QHR+ G+K   G FTNL RDH+DYH+T + Y +AK   F + 
Sbjct: 170 ADEGCKYAFMEVSSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKK-AFFDG 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + A+   DD     +++                    + +             ++ 
Sbjct: 229 LPKGAFAVTNVDDRNGMIMVQNTKAVVNTYSLRAVADFKAKVLEESFEGMC------LDV 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +   P  G F V N L      + +G  +  VL  L  L  V GRFE    +  G  
Sbjct: 283 NGKEVSVPFIGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFE-TIRSREGVT 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  +  I   R  +I V G GG+RD+GKRPIM + A+  +D  I+
Sbjct: 342 AIVDYAHTPDALVNVLSTVNEILKRRGEVITVCGAGGNRDKGKRPIMAQEAVKNSDRVII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P++I  +++ G+        I   +R EAIRTA  M    DV++VAGKGHE
Sbjct: 402 TSDNPRFEEPQEIINDMLAGLDKEQMRKVISIVDRKEAIRTACMMARPGDVVLVAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
               V  G K    D ++I+ + G+
Sbjct: 462 DYQEVK-GVKHHFDDHEVIKGVFGI 485


>gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parabacteroides distasonis
           ATCC 8503]
          Length = 486

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 158/504 (31%), Positives = 248/504 (49%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DLI      ++       M      I  + SDSR +  G +FVA+ G   DGH ++
Sbjct: 1   MELRDLIGALEAPML-------MGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYM 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI +GA AIV        +  + +      +VV ++ + L L  SR YG     ++  
Sbjct: 54  DSAIEKGAVAIVCE------ETPSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSRKLMLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP P+ L   ++ +
Sbjct: 108 GVTGTNGKTTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQ R+ G+    G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 VEAGCEYAFMEVSSHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+  ADD     +++                    +       + +   + + G
Sbjct: 227 LPAGTFALTNADDKSGLVMLQNTKAKKLTYSLRTLADFKGKI----LESHFEGTDLIING 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++        G F  YN L   G  +++G D   VL  L  L  V GRFE    +  G  
Sbjct: 283 REVMVH--FVGRFNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFE-TIQSPLGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    GRII V G GG+RD+GKRP+M K A+ L+D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNGIHEVLDGKGRIITVVGAGGNRDKGKRPLMAKEAVKLSDQVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R +AI+TA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K+   D + +REI  
Sbjct: 460 DYQEIK-GVKQHFDDREKLREIFS 482


>gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes Finland 1988]
 gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes J0161]
 gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
 gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900]
 gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900]
 gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
          Length = 491

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 154/509 (30%), Positives = 238/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADDA S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   +V + E     D    R  +   L
Sbjct: 461 HEDYQVVGD-EVIDFDDRVEARIAIEKKL 488


>gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 491

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 145/508 (28%), Positives = 229/508 (45%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+                     ++++++ DSR +  G +F+ I G   DGH F 
Sbjct: 1   MKLNELMQAIPV-------FTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA A+V      +           P++ V ++++ +++ A+  YG   +   ++
Sbjct: 54  KKAEELGAVAVVAEKPVDVT---------IPVIYVRDSKRAMAMLANYFYGSPTQALKLV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+QI + SG  +  IG     I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             +GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK       
Sbjct: 165 LLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                      A++ ADD  S  +                         +    +     
Sbjct: 225 GNSYHTSNPKIAVLNADDEESVRMQTATAAHVITFGIKENADF--RATNIEITSHGSTFN 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++     F     + G F VYN L A     A+ I     +  +E +  V GRFE V   
Sbjct: 283 LTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELV-NA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDY+HT + L  +L+ I    + R+ VV GCGGDRD+GKRP M KIA+  A  
Sbjct: 342 GQDFPVIVDYSHTPDGLLNVLQTIDEFANKRVFVVVGCGGDRDKGKRPQMAKIAVQYATN 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + T DNPRSE+P  I  ++I G+P    ++   NR +AI+ AI      DV+++AGKGH
Sbjct: 402 PVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497
           E   I+ + E     D    R  +   L
Sbjct: 462 EDYQIIGD-EVIDFDDRVEARLAIEKRL 488


>gi|117924068|ref|YP_864685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
 gi|117607824|gb|ABK43279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
          Length = 495

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 165/481 (34%), Positives = 249/481 (51%), Gaps = 17/481 (3%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +  +   E  I ++ +DSR  + G +F A+ G++ DG  +IPQA+   A AI+       
Sbjct: 15  LTVLGDGETVITQLCNDSRLCEPGSLFAALPGSRVDGRDYIPQALELEAAAILHD----- 69

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137
              S ++  NTP L+  + R+ L+  A+  YG+  +    + +TGT+GKS+VAS    I 
Sbjct: 70  --GSLSLDPNTPQLIHPDPRRALAHVAAAFYGQPQKKLKSIVITGTNGKSTVASMCATIL 127

Query: 138 QRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           + SG     I      I         TTP  I L   L+ +       + +EASSH LDQ
Sbjct: 128 RHSGQRVGLISTVGIDIEGQKLATSHTTPDAITLYGLLADMVQANCRWLVMEASSHALDQ 187

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HRL GI+     FTNL RDH+DYH    AYF AK +LF E       A++ + DA+++ +
Sbjct: 188 HRLVGIQPDVALFTNLSRDHLDYHGDMGAYFQAKAKLFRE--YHPKLALLPSSDAHAQAL 245

Query: 257 MKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                  G  V + G   +  ++ K++ A  +  +  +  + +        PG F + NA
Sbjct: 246 NSICREQGVAVQTYGRVARQGVYAKQISAAIDCTRFVLQQKNQSAPVTLMAPGRFNLDNA 305

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L AA  C+ + +D   V E L +   V GR +      +   + VD+AHT ++L+ +L +
Sbjct: 306 LAAASACLGMDLDLETVAEGLNRFQSVAGRVQ-AIHEGQNFAVLVDFAHTPDALDRLLSS 364

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R +T G++ VVFGCGGD+D GKRP MG+ A  LA   I+TDDNPRSEDP  IRA+I+ G
Sbjct: 365 LRPLTPGKLWVVFGCGGDKDSGKRPHMGECAGRLAHFPIITDDNPRSEDPAAIRAQIMRG 424

Query: 436 I--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  E  +R +AI  A+      D +V+AGKGHE   I  +G      D ++ R+ L
Sbjct: 425 CRNRNAQEMDDREDAITYALVNAQPGDTVVIAGKGHEQSQIGAHGAT-PFSDAEVARQAL 483

Query: 494 G 494
            
Sbjct: 484 R 484


>gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 155/523 (29%), Positives = 245/523 (46%), Gaps = 41/523 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+ +          +      + +I  +  DSR +  G +FV + G K DGH F 
Sbjct: 95  MTLRKLLNE-----ARVSPLSTEGDLDVEITGIQQDSRLVAPGDLFVCVKGLKSDGHQFA 149

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QAI +GA AI+     SL +           ++V++T   LS  A  +YG   +   ++
Sbjct: 150 IQAIEKGAVAIISLMEVSLTEGLKAA------VIVEDTSVILSALAGVIYGHPSKKLSVV 203

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176
            +TGT+GK++ +  +Q + +  GL    +G            +   TTP  + L   ++ 
Sbjct: 204 GITGTNGKTTTSYLLQSLYEAMGLQVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMAS 263

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G     +E SSHGL   R + I+     FTNL RDH+D+H+T++ Y  AK  LF +
Sbjct: 264 MVQNGTEVCIMEVSSHGLVLGRCEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAK 323

Query: 237 LLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++  E    +   D  +    V +   +       +G +   ++   V     + +V + 
Sbjct: 324 MVDPERQRKVVNIDDPNVSYFVSQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVR 383

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G   VYN L A  + IA+G     ++  +E +  VPGR E +     
Sbjct: 384 TPQGDVEISSRLLGRHNVYNILTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELIDEGQT 443

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +++  +L  +R     RII V GCGGDRD+GKRPIM KIA D +D+ I
Sbjct: 444 -FAVLVDYAHTPDAVARLLDTVRECGPKRIITVLGCGGDRDKGKRPIMAKIAADKSDVCI 502

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE-----KGN-----------------RIEAIRTA 452
           +T DNPR+E P  I  +++ G+   +E     + +                 R +AIR A
Sbjct: 503 ITSDNPRTEKPLDIIDDMLAGVGWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRAA 562

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           + M  + D +V+AGKGHET  I+    K    D +  RE L L
Sbjct: 563 VAMAEEGDAVVIAGKGHETYQIIGE-IKGHFDDREECREALRL 604


>gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 485

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 154/507 (30%), Positives = 244/507 (48%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR + +G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIHP-------VKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA AI+        +  A +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIEKGAIAILCE------ELPAELNEEITYIQVTDSEDAVGKVATAFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+E 
Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK S ++   DD     + +   +                + +              + 
Sbjct: 227 LPKSSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVQFIGRFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFD-AIRSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDNEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFSLTI 485


>gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
 gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
          Length = 491

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 151/509 (29%), Positives = 237/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADD  S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSAF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      D++++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   ++ + E     D    R  +   L
Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIEKKL 488


>gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2]
 gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2]
          Length = 514

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 172/515 (33%), Positives = 257/515 (49%), Gaps = 33/515 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +  P     L        + +I  + +DSR ++ G +F+A+ G K DGH ++
Sbjct: 1   MKLSYLLKECTPLWRRSLDPASDPGSDPEITSIHNDSRDVKPGGLFIAVRGFKIDGHDYV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+ +GA A+VV      +           ++ V +TRK ++  A+R Y    E   ++
Sbjct: 61  EDALERGAAAVVVQQRVPGKQR---------MVEVADTRKAMASIAARFYDNPSESMCLV 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ I  ++G     IG  +        +N +TTP  I L + L+ +
Sbjct: 112 GITGTNGKTTTSFILESIFAQAGHCVGVIGTVNFRYRGKLFNNPVTTPESIDLQRILAQM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V+HV +E SSH +D HR+   +  AG FTNL +DH+DYH+T   YF  K R F  +
Sbjct: 172 KAAQVSHVVMEVSSHSIDLHRVRNCRFDAGVFTNLTQDHLDYHRTMGRYFACKRRFFTRI 231

Query: 238 LPKESPA---IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           LP    A   +   +    K    R   A   V +       +    +          + 
Sbjct: 232 LPSGPKALTAMAVINLDDEKGQALRDAAATKVVTTGRDSRADVCALDLAETITGTTGILK 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++G  + F   L G F V N L AAG   AIGID  +++  +E    VPGR E V     
Sbjct: 292 IDGAPYPFSSALVGAFNVENILSAAGAAHAIGIDPQVIVRGIEGCKGVPGRLERV-EPDN 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  ++VDYAHT ++L  IL+ ++     RII V GCGGDRD+ KRPIMG+IA  L+D+AI
Sbjct: 351 GRHVFVDYAHTPDALMSILETLKAQAPKRIITVVGCGGDRDRSKRPIMGQIAATLSDVAI 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----------------GFIEKGNRIEAIRTAIEMLNK 458
           +T DNPRSEDP  I  EI+ GI                 GF  + +R +A+  A+     
Sbjct: 411 ITSDNPRSEDPHGIIQEILKGIDTALCPELKPDQLKTGNGFFVEPDRRKALELAVAASTP 470

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D+LV AGKGHET  I+  G      D +I+   L
Sbjct: 471 GDILVAAGKGHETYQILKGGT-IHFDDREILSSAL 504


>gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 500

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 232/480 (48%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     GV   ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +A        +  +        V       ++       + +    L G F V N L A 
Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E             + VDYAHT ++LE  L+  
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 488

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 159/479 (33%), Positives = 232/479 (48%), Gaps = 13/479 (2%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                + E++ DSR  +AG +FVAI G++ DG  +IPQA+  GA A++  +    Q    
Sbjct: 13  AENVNLTEMTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQHLQV 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
                 P++      + LS  A   YG+  + +  + VTGT+GK++ A  + Q  +  G 
Sbjct: 73  RYEQQVPLIAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKILGH 132

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           +S  +G          ++   TT S + +  +L+   +QG    ++E SSHGL QHR++ 
Sbjct: 133 TSAVMGTIGNGLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVSSHGLVQHRVEA 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   A  FTNL RDH+DYH T + Y  AK RLF EL  +       ADD      +    
Sbjct: 193 VHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHHII--DADDPVGAAWLAEMP 250

Query: 262 N---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                         Q K++    V   H    +       + +    L G F V N L+ 
Sbjct: 251 EAVAVSANADFAPRQAKWLKAVNVSFNHKGASIQFESSWGNGELQSALIGAFNVSNLLLI 310

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +A+G D A ++    KL  V GR E +        + VDYAHT ++LE  L+  R 
Sbjct: 311 MATLLALGYDLAELIGSAHKLTGVCGRMEMLH-APHKPTVIVDYAHTPDALEKALQAARL 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              G++  +FGCGGDRD GKRP+M KIA  LAD  I TDDNPR+ED  +I A+I+ G   
Sbjct: 370 HCHGKLWCIFGCGGDRDSGKRPLMAKIAEQLADKVIATDDNPRTEDHTQIMADILKGFIH 429

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                    R EAI TAI+   + DV+++AGKGHE   I+    K    D ++ R  L 
Sbjct: 430 PQAVQVIHQREEAIATAIQSAVENDVILIAGKGHEDYQIIG-KTKHHFSDQEVARHYLS 487


>gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 486

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 159/504 (31%), Positives = 255/504 (50%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++++YK   E+++          +  ++ +  DSR IQ+  +FVAI G+  +GH FI
Sbjct: 1   MLLKEILYKVALEVVHGS-------TDVAVHNIHFDSRKIQSNDVFVAIRGSVSNGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AIA GA+AIV  +          + S    + V +T   L+  A+  Y    +   ++
Sbjct: 54  DKAIALGAKAIVCDT------LPTNLLSQITYVKVKDTNAALAYLATNFYDNPSQKLQLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++AS + Q+ +++G     +     +          TTP  + +   L  +
Sbjct: 108 GVTGTNGKTTIASLLYQLFKKAGFKVGLLSTVKILVDEIEHKATHTTPDSLTINYYLDKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSHG+ Q R +G++ + G FTNL  DH+DYH T   Y + K   F + 
Sbjct: 168 VEAGCQYCFMEVSSHGIHQKRTEGLQFVGGVFTNLSHDHLDYHPTFSDYRDVKK-SFFDN 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + A+   DD     +M+             Y      + +           + ++ 
Sbjct: 227 LPKNAFALSNIDDKNGAVMMQNTKARKLSYALKTYADYKAIIIENQLSG------LLLKI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +    L G F  YN L   G+ I +GI+   VL  L +L  V GRF+F+  + +   
Sbjct: 281 NEQEVWVRLIGTFNAYNLLAIYGVAIELGIEKLEVLRLLSELESVSGRFQFI-VSKQNIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +L  I  I +     I + GCGGDRD+ KRPIM  IA  ++D AI+
Sbjct: 340 AIVDYAHTPDALENVLSTINDIRTRNEQLITIVGCGGDRDKTKRPIMANIASQMSDKAIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+PE I AE+  GI       ++   +R +AI+TA ++    D++++AGKGHE
Sbjct: 400 TSDNPRTENPETIIAEMEAGITAVNYKKYMSIIDRKQAIKTACQLAQPNDIILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   + NG +    D  I++EIL 
Sbjct: 460 TYQEI-NGVRHDFDDMQIVKEILE 482


>gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 496

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 157/479 (32%), Positives = 220/479 (45%), Gaps = 15/479 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++ +++ DSR +QAG +FVA+ G++ DG  FIP AI QGA  I+  +     +     +
Sbjct: 19  TELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEAELDSK 78

Query: 88  ---------SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQI 136
                    +   ++ V N  K LS  A   Y      +    +TGT+GK++ A  + Q 
Sbjct: 79  FAKFNLDRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQW 138

Query: 137 CQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G          Q+   TT S I + + L+     G    ++E SSHGL 
Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLA 198

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R + +      FTNL RDH+DYH T + Y  AK RLF EL  K        +      
Sbjct: 199 QFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWL 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                  A           +F+    V        +       + +    L G F V N 
Sbjct: 259 TQLPNAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRLIGAFNVNNL 318

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A    +A+G D   +++    L  V GR E   T      + VDYAHT ++LE  L+ 
Sbjct: 319 LTAFAGLLALGFDIQDLIKTSPNLVGVAGRME-CITAPNKPMVIVDYAHTPDALEKALQA 377

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  +FGCGGDRD GKRP+M  IA  L D  I TDDNPR+ED +KI A+I+ G
Sbjct: 378 ARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKG 437

Query: 436 IPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                    NR EAI+TAIE     DV+++AGKGHE   I+   EK    D +  R+ L
Sbjct: 438 FSKPQQIIHNREEAIKTAIEQAKATDVILIAGKGHENYQIIGT-EKLHFSDQETARKYL 495


>gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas mossii DSM 22836]
          Length = 483

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 147/505 (29%), Positives = 236/505 (46%), Gaps = 34/505 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKLQDL+   D  E+  +        ++  +  V +DSR    G +F+A+ G + DGHL+
Sbjct: 1   MKLQDLLKNIDVIEIKGE--------QDINVTGVFTDSRKATPGSVFIALKGVQVDGHLY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I  A+  GA+ I+  +     +           + V ++       A+  YG       +
Sbjct: 53  IKNALELGAKVILHENKIDTSN------EGITYIKVKDSADAAGKIATHWYGDPSNNLKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++ A+ + ++ ++ G     +   +            TTP PI L + L  
Sbjct: 107 VGVTGTNGKTTTATLLYEMFRKLGYKVGLLSTVANYIDGKVYHATHTTPDPISLNEMLKN 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  +  +E SSH + Q R+ G+K   G FTNL +DH+DYH+T   Y  AK   F +
Sbjct: 167 MVDAGCEYAFMEVSSHAIHQKRISGLKFEGGIFTNLTQDHLDYHKTMGEYLKAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP  + A+   DD     +++                    + +        ++     
Sbjct: 226 QLPDTAFALTNIDDKNGLVMLQNTKAKTSTYSVHSLADFKARIIEKHFDGTAIEINGKEL 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F  +F +      YN L   G  + +G  S   L  L  L  V GRFE + ++  G 
Sbjct: 286 QVQFVGVFNV------YNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETIRSSQ-GF 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L+ I  +   +GR+I V GCGG+RD+ KRPIM + A+ L+D  I
Sbjct: 339 TAIVDYAHTPDALTNVLEAIHEVLEGNGRVITVVGCGGNRDKTKRPIMAREAVRLSDQVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  ++  G     +   +    R +AI+TA  +    DV+++AGKGH
Sbjct: 399 LTSDNPRYEEPQAIINDMADGLNSEQLKKALLIVEREQAIKTACALAKAGDVILIAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    V  G K    D +I++ I G
Sbjct: 459 EDYQDVK-GVKHHFDDKEIVKNIFG 482


>gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
 gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
          Length = 484

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 240/504 (47%), Gaps = 34/504 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+++I      ELI           +R I  +  DSR +  G +FVAI G + DGH +
Sbjct: 1   MKLEEIIKAVTVNELIGS--------ADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I +AI  GA  IV             IR     + + +T   +   A+  YG       +
Sbjct: 53  IQKAIENGACGIVCEQ------LPEEIRPEVTYIRLADTEGAVGKLATAFYGDPTSKLDL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ + ++ ++ G     +    + I   A     TTP PI L + L  
Sbjct: 107 IGVTGTNGKTTIATLLYKMFRQFGYKVGLLSTVCNYIDDEAIPADHTTPDPITLNRLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G++   G FTN+ RDH+DYH+T + Y  AK   F +
Sbjct: 167 MADEGCKYAFMEVSSHAIAQRRIAGLRFAGGIFTNITRDHLDYHKTFENYLKAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD   K +++                    + +             ++
Sbjct: 226 NLPKSAFALTNLDDKNGKVMVQNTKARIAAYSLRTLCDFKGKVLEDGFDGML------LD 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  S  VL  L  L  V GRF+ +  + RG 
Sbjct: 280 INNREVNVRFIGRFNASNLLAVYGAACLLGKPSEEVLIALSTLCPVAGRFDALR-SRRGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L  I  +    GR+I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALVNVLNAIHEVLRGQGRVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G     +   +   +R EAIRTA  +   QDV+++AGKGH
Sbjct: 399 ITSDNPRFEDPQDIINDMLAGLDKDDMKKVLSIVDRKEAIRTACMLAQPQDVVLIAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +I+  I 
Sbjct: 459 ENYQEIK-GVKHHFDDKEIVNGIF 481


>gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
 gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
          Length = 482

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 161/473 (34%), Positives = 256/473 (54%), Gaps = 25/473 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  ++ +S+ ++ G++F AI G + DGH FI +A  +GA A+VV    S         
Sbjct: 21  KRVKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVS--------- 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S  P+++V++TRK L   A   +GK  E  N++ +TGT+GK++    +++I   +G  + 
Sbjct: 72  SKVPVIIVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTG 131

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG            +  TTP  I   + L      G  +V  E SSH LDQ+R+   + 
Sbjct: 132 LIGTIYYRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRF 191

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            A  FTNL +DH+DYH+T + YF +K +LF E   K       ADD Y K ++K  H   
Sbjct: 192 EAVLFTNLSQDHLDYHKTMEDYFASKAKLFTEYESKVKIIN--ADDTYGKRLLKITHGEI 249

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                 G       +           + I+ +GK+++F   L G+FQ YN   A    + 
Sbjct: 250 ITYGKKGDLK----ILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAYALW 305

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GI+  L+   L+ ++V PGRFE V ++     + +DYAHT +++E +L+  R ++ G++
Sbjct: 306 KGIEPDLIQRALKCVNV-PGRFEVVHSD--KFTVIIDYAHTPDAVENVLRTARKLSKGKL 362

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441
           I VFG GG+RD+ KRP+MGK A   +D+ I+T DNPR E+PEKI  +I+ GI      I 
Sbjct: 363 ISVFGAGGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEKDKVII 422

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + +R +AI+ AI+M  + D++ + GKGHE    +  G K    D  +++EILG
Sbjct: 423 EADRRKAIKKAIDMAKEGDMVAILGKGHEDYQEIK-GVKYPFSDAQVVKEILG 474


>gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Legionella longbeachae NSW150]
          Length = 483

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 160/499 (32%), Positives = 238/499 (47%), Gaps = 24/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     + I           +  I  + +DSR I  G +F+A  G   DG LFI
Sbjct: 1   MKLSQLLKPWMKQSI----------MDCLITGLENDSRRIHPGDLFIAYAGAAADGRLFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A++ GA A+    A    +    +  + P + V      L   A + Y       NI 
Sbjct: 51  DNAVSSGAVAVAYDPADFPLNC--VLPESVPCIPVPELSTQLPNIAKQFYDNPACFLNIT 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A  + Q     G  +  IG     + +  +    TTP  + L K L   
Sbjct: 109 GVTGTNGKTTIAYQLAQAHHLLGQKAAYIGTIGQGNVNELRLVDNTTPDSLCLQKLLHQY 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            SQ +  V +E SSH L QHR+D ++     FTNL  DH+DYH + + Y  AK  LF   
Sbjct: 169 KSQDMRQVCMEVSSHALAQHRVDALEFNQAIFTNLTLDHLDYHHSMENYARAKSLLFARE 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII  DDAY K +         ++    +Q   +  K         ++ +    
Sbjct: 229 SLEW--AIINQDDAYHKIMAAAIKPQVKKLTYGIHQDCDVRAKNWSMDIYGTEIEVHSPW 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                     G+F +YN+L      +A       V++ + +L   PGR E V  +     
Sbjct: 287 GKHHIKIKSLGQFNIYNSLAIFSSLLAANYIPEQVVDVMAQLKAAPGRMEIVAHSPY--- 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L  +  +  GR+ VVFGCGGDRD+ KRPIMGK+A  LAD  ++T 
Sbjct: 344 VLVDYAHTPDALENALMTLNQLKKGRLWVVFGCGGDRDKTKRPIMGKVADKLADEIVITS 403

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E+P+ I  EI  GI      I+  NR EAI  A++  ++ DV+++AGKGHE+   
Sbjct: 404 DNPRTEEPQIIINEISKGIALSTKVIQLVNREEAIAYALDKADENDVILIAGKGHESYQQ 463

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +    K    D D++R ++
Sbjct: 464 IGT-VKHQFSDQDVVRSLI 481


>gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 481

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 159/490 (32%), Positives = 240/490 (48%), Gaps = 23/490 (4%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+     E++           E +   +  DSR I+ G IFVA+ G+  DGH +I QAI
Sbjct: 3   ELLLGLDYEILQ------KGKTEIEFKGMEYDSRKIKDGDIFVALEGSISDGHKYIKQAI 56

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA+ ++VS     +            ++V + RK L   AS  YG   + +  +  T 
Sbjct: 57  ENGAKGVLVSKKVEPEFP-------VEYILVKDLRKNLGKIASNFYGYPQKKLKIIGITG 109

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
                 S              +IG     I     +   TTP  + + K       +G+ 
Sbjct: 110 TNGKTTSTYLLESILGKEKVARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKKAVEKGLE 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ +E SSH L   R+D ++    SFTNL  DH+DYH+    YF AK +LF   L     
Sbjct: 170 YLVMEVSSHALSLGRVDMLEFDVASFTNLTLDHLDYHENMDNYFQAKRKLFTM-LKDSKK 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           + I  DD Y   + K        +         I    V    + Q V +++ G+ F+  
Sbjct: 229 SSINIDDIYGDRLYKEFGGYSYSLTKSADLTGEI----VEFHSDGQFVRLNLMGEMFEEK 284

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G + +YN L   G+ + +GI   ++LE L+ +   PGRFE V        + VDYA
Sbjct: 285 LAILGRYNLYNVLGVIGIALQLGIGKNIILEKLKDIKGAPGRFELVNCGQ-DYIVVVDYA 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE ILK+I  +  GR+I VFGCGGDRD  KRPIMG+IA  L+DIAI+T DNPR+E
Sbjct: 344 HTGDALENILKSINELKKGRVITVFGCGGDRDATKRPIMGEIAQRLSDIAILTSDNPRTE 403

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +P  I  ++  G+    ++ + +R +AI  AIE+  K D++++AGKGHET  I+   +K 
Sbjct: 404 NPHLIIEDVKKGMNGDHYLVEEDREQAIVKAIEIAQKNDIILIAGKGHETYQILGR-KKI 462

Query: 482 MSVDCDIIRE 491
              D +I R 
Sbjct: 463 HFDDREIARR 472


>gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 483

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 156/492 (31%), Positives = 241/492 (48%), Gaps = 25/492 (5%)

Query: 12  PELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            ELI  +     +      I+ V+ DSR I+ G +FVAI G + DGH +I +AI  GA A
Sbjct: 4   NELIKDIKCTDILGDTNVSISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++   A           S+   +VV +T   +   A+R YG   +   ++ VTGT+GK++
Sbjct: 64  VLCEKA------PKEPLSDITYIVVTSTEDAVGKVATRFYGDPSKHLKLIGVTGTNGKTT 117

Query: 129 VASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +A+ +  + ++ G     +    + I         TTP PI L + L+ +  Q   +V +
Sbjct: 118 IATLLYNMFRKLGHRCGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFM 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH + Q R+ G+    G FTNL RDH+DYH+T + Y NAK   F + LPK + AI  
Sbjct: 178 ECSSHAIAQKRIGGLNFTGGIFTNLTRDHLDYHKTFENYRNAKK-SFFDHLPKSAFAITN 236

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD     +++                    + +        ++     G  F   F + 
Sbjct: 237 ADDKNGMVMVQNTKATVKTYSVRTAADFKARIIECHFQGMYLEIDGQEVGVQFIGKFNVS 296

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 N L        +G     +L  +  LH V GR + +  + +G    VDYAHT +
Sbjct: 297 ------NLLAVYATARMLGKQREEILIAMSTLHSVNGRMDTLH-SPQGFTAVVDYAHTPD 349

Query: 368 SLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +L+ +L  I  +   G +I V G GG+RD+GKRP+M K A+ L+D  I+T DNPR E+P+
Sbjct: 350 ALKNVLLAIHEVDGKGHVITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEEPQ 409

Query: 427 KIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            I  +++ G     +   +   +R EAIRTA  + +K DV++VAGKGHET   V  G K 
Sbjct: 410 DIINDMLAGLDAQDMKKVLSIVDRREAIRTACMLADKNDVVLVAGKGHETYQEVK-GVKH 468

Query: 482 MSVDCDIIREIL 493
              D +++ EI 
Sbjct: 469 HFDDKEVLAEIF 480


>gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 481

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 245/501 (48%), Gaps = 32/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  ++    P       +  +   E +I  V  DSR +    +FVAI G + DGH FI
Sbjct: 1   MTLSSILKNVKP-------LSVVGNAEVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+AQGA A++  +          +      + V++T   +   A+  YG+  + +  +
Sbjct: 54  DKAVAQGATAVLCET------MPTQLPQGVTFVQVESTEDAVGPVATMFYGEPSKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     +    + I   A     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH + Q R+ G+    G F+NL RDH+DYH+T + Y NAK   F ++
Sbjct: 168 VEAGCEYVFMECSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKK-AFFDM 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ AI  ADD     +++    A     +         + +        ++  +  G
Sbjct: 227 LPKQAFAITNADDKNGMVMVQNTRAAVKTYSTRSMADFKAKILECHFEGMYLEINGAEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L      + +G     +L  +  LH V GR + + ++  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYATAVMLGKRPEDILLVMSTLHSVNGRLQPL-SSPEGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M   A+  +D  I+
Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGKVITVCGAGGNRDKGKRPLMAVEAVKQSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP+ I  +++ G     +   I   +R EAIRTA  M  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEDPQAIINDMLAGLNAQQMKKVISIVDRREAIRTACMMAQKGDVVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIRE 491
               +  G K    D ++++E
Sbjct: 460 DYQEIE-GVKHHFDDKEVVKE 479


>gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae L20]
 gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 500

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     G    ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +A        +  +        V       ++       + +    L G F V N L A 
Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E             + VDYAHT ++LE  L+  
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 513

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 236/506 (46%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADD  S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGI--KQQADFKASNIRITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE   ++ + E     D    R  + 
Sbjct: 461 HEDYQVIGD-EVIDFDDRVEARIAIR 485


>gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 500

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     G    ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           NA        +  +        V       ++       + +    L G F V N L A 
Sbjct: 262 NAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELDSRLIGAFNVNNLLTAL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E             + VDYAHT ++LE  L+  
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 488

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 153/477 (32%), Positives = 239/477 (50%), Gaps = 13/477 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  + E++ DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q      
Sbjct: 15  DINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQQHLQVHY 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P++      + LS  A   Y    +++  + VTGT+GK++ A  + Q  Q  G + 
Sbjct: 75  EQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTG 134

Query: 145 FQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G          ++   TT S + +  +L+   ++G    ++E SSHGL QHR++ + 
Sbjct: 135 AVMGTIGNGLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESVH 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN- 262
             A  FTNL RDH+DYH T + Y  AK RLF EL  +       ADD      +    + 
Sbjct: 195 FSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQII--DADDPVGAVWLAEMPHA 252

Query: 263 --AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +   +  Q  ++    V   H    +       + +   PL G F V N L+   
Sbjct: 253 VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNLLLVTA 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +    + ++  + KL  V GR E + T  +   + VDYAHT ++LE  L+  R   
Sbjct: 313 TLLTLDYPLSGLINSVHKLTGVCGRMEMLHTPQKPT-VIVDYAHTPDALEKALQAARLHC 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
            G++  +FGCGGDRD GKRP+M KIA  LAD  I TDDNPR+E+P+KI A+I++G     
Sbjct: 372 RGKLWCIFGCGGDRDSGKRPLMAKIAEQLADHVIATDDNPRTEEPKKIMADILNGFVHPQ 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                  R +AI TAI+   + DV+++AGKGHE   I+    K    D +++R  L 
Sbjct: 432 SVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQIIG-KTKYHFSDQEVVRNYLS 487


>gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
 gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
          Length = 490

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 208/497 (41%), Positives = 283/497 (56%), Gaps = 21/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+           +          +  +S DSR +    +F A+ G K DG  F 
Sbjct: 1   MRLAELLPG---------ASLTNDLASLDVAALSCDSRKVAPKALFFAVPGTKADGLAFA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA  +GA AIV          SA      P++ V + R  L+  A+R + + PE I+A+
Sbjct: 52  PQAARKGAVAIVAE------GKSAASIEGAPVIAVADVRAALAEAAARFFPRQPETIVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+FV+Q+   +G ++  +G    ++        LTTP PI L + L  L++
Sbjct: 106 TGTSGKTSVAAFVRQLFAANGFAAASLGTLGVVAPNGSVYGSLTTPDPINLHETLDGLAA 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASSHGL Q RLDG++L AG+FTNL RDH+DYH T   Y  AK+ LF+ LL 
Sbjct: 166 SGVTHLALEASSHGLTQRRLDGVRLKAGAFTNLSRDHLDYHATMAEYLAAKLELFQRLLD 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              PA+I AD   + EV+      G ++ +VG +G+ + L +         + ++ EG+ 
Sbjct: 226 PGQPAVIDADSDVATEVIAACKARGLKIFTVGSKGESLKLLRATPKAAATGIEVAHEGRI 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G FQ  NALVAAGL I  G+ +   L  LE +   PGR E VG    G  IY
Sbjct: 286 YKLELPLAGAFQTSNALVAAGLAIVCGVSAERALTALEHIEGAPGRLEKVG-ERNGAPIY 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L  +R   +GR++VVFGCGGDRD GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 345 VDYAHKPDALEKVLCALRPAVAGRLLVVFGCGGDRDAGKRPIMGEIAAKLADLVIVTDDN 404

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PRSEDP  IRA I+ G  G     E G+R  AIR  +  LN  D L++AGKGHET  I+ 
Sbjct: 405 PRSEDPASIRAAILKGAAGAATVREIGDRASAIRAGVAALNSGDCLLIAGKGHETGQIIG 464

Query: 477 NGEKKMSVDCDIIREIL 493
           +       D D  R  L
Sbjct: 465 D-VTLPFSDADCARAAL 480


>gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
 gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
          Length = 493

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 158/495 (31%), Positives = 251/495 (50%), Gaps = 9/495 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      +++    +         ++E+  DSR +Q G  FVA++G+  DG  FI  AI 
Sbjct: 1   MTKAISMDVLLSPWVDCPSLSSVLVSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A +  +       +  I  + P++ +D   + LS  A +LY     +++ VTGT+G
Sbjct: 61  QGANAALAQACDVKTHGTVEIIDDVPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q  +     +  +G T     +  Q    TT + + + K LS L++Q  T+
Sbjct: 121 KTTITQLIAQWLELLDDKAAVMGTTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T + Y  A  +L      +   A
Sbjct: 181 TALEVSSHGLTQGRVKALSFAAGVFTNLSRDHLDYHGTMEEY--ANAKLGLFTQHQCKRA 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD    +   +  NA    L         I   +V    +   +    +    +  
Sbjct: 239 IINVDDEVGHQWASQLSNAIAISLKPNTEFESAIWATEVSYAESGITIKFDGKFGSGELH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++GI+   +LE   +L  V GR E   T  R  ++ VDYA
Sbjct: 299 APLIGEFNATNLMLAFATLLSLGIEKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP +I  +++ G+      I + +R +A+  AIE  +  D++++AGKGHE    + NGE 
Sbjct: 418 DPVQIVKDMLAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKGHEDYQ-IRNGET 476

Query: 481 KMSVDCDIIREILGL 495
               D +   ++LGL
Sbjct: 477 IHYSDRESAMQLLGL 491


>gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer RA-YM]
 gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 486

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 164/502 (32%), Positives = 247/502 (49%), Gaps = 32/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++           +  +   + +++ +  DSR  +A  ++VAI G+  DGH FI
Sbjct: 1   MLLRELLHNIPV-------LETIGALDVEVSSIVFDSRKAEAKSLYVAIKGSVSDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA+ IV      L+D    +      + V N  K L   AS  YG   E +  +
Sbjct: 54  GSAVEKGAKVIV------LEDLPEILDETITYIKVKNLSKVLGQLASNFYGNPSEKLNLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV++ +  + +  G  S  I             +  TTP  + L + L+  
Sbjct: 108 GVTGTNGKTSVSTLLFDVFKNLGYPSALISTVEYRIGDEVFPSTHTTPDVVKLNELLAKA 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +QG  +  +E SSHG+ Q+R +G+      FTN+  DH+DYH+T   Y N K   F + 
Sbjct: 168 VAQGCEYAFMEVSSHGIHQNRTEGLHFKVAGFTNITHDHLDYHKTFLEYLNTKK-SFFDN 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + AI   DD     +++                    L +V          ++  G
Sbjct: 227 LPDSAVAITNLDDKNGLVMLQNTKAKKKTYALKTLSDYHGRLLEVDFNGM----LLNFNG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+        G+F VYN L+  G+   +G D   +L  + +L  V GRFE + +   G  
Sbjct: 283 KEVWTSL--TGKFNVYNLLLVFGIARELGFDEVEILTAISQLKRVNGRFETIKSEG-GIF 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE IL +I  I +   R+I VFGCGGDRD  KRP MGKIA   + +AI+
Sbjct: 340 FVVDYAHTPDALENILDSINEIRTKNERLISVFGCGGDRDHSKRPEMGKIATQKSTLAII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+EDP  I  EI  G+       +    +R EAI+ AI+    +D+++VAGKGHE
Sbjct: 400 TSDNPRTEDPNTIIQEIEAGVEPQCFSKYTVVPDRREAIKMAIKFAEPKDIILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V NG K    D ++I E+
Sbjct: 460 IYQEV-NGVKHHFDDKEVILEL 480


>gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
 gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
          Length = 500

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 164/509 (32%), Positives = 250/509 (49%), Gaps = 24/509 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++LI     + ++          + +I+ ++ DSR I+ G +FVA+ G   DGH FI
Sbjct: 1   MLLRELIENINIKTLSG-------GLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKH--PEN 116
             A+ +GA A++               S+    +L V+++RK LS  A+  YG      N
Sbjct: 54  GDAVRKGAVAVLSELKTDAIARKLACESDQMPVLLQVEDSRKALSQLAATFYGHPFRTMN 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK++ +  ++ I   +G +   IG  +         + +TTP  + L K L 
Sbjct: 114 LIGITGTNGKTTTSYLLEFILAAAGRNPGVIGTINRRIGQLCFKSSVTTPESLDLMKILR 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF- 234
            ++ Q  T V +E SSH LDQ R+         FTN+ RDH+DYH +   YF AK  LF 
Sbjct: 174 EMADQSATDVIMEVSSHALDQGRVADCPFRVALFTNISRDHLDYHHSMDDYFRAKSLLFE 233

Query: 235 ---EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                     + A+I  DD + K +M                        V       + 
Sbjct: 234 GLGNRGNQGAACAVINTDDPWGKHLMALTPARTVTYGLGNSCDVTAKDVSVSRKGLHAR- 292

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I  + ++ D    L G F +YN + AA   +A+G+DS  +L  +E++  VPGR E V  
Sbjct: 293 LIFEKREEIDIRSSLIGNFDIYNIMAAASAAMAMGVDSKAILLGIERMKGVPGRMELVP- 351

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N R   I VDYAHT ++LE  L   + ITSGRI+ VFGCGGDRD+GKR  MG+IA   + 
Sbjct: 352 NDRSLAIIVDYAHTPDALEKALAATKQITSGRILTVFGCGGDRDKGKRYEMGRIAGANSH 411

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              VT DNPRSEDP  I  +I  G+       ++ + +R +AIR A+      D++++AG
Sbjct: 412 RIFVTSDNPRSEDPASIADQIEKGVIASGHQNYVIELDREKAIRMAVREAANDDLVLIAG 471

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE   ++    ++   D  +      L
Sbjct: 472 KGHEDYQLMG-KTRRNFDDRVVAARAASL 499


>gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
 gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
          Length = 520

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 164/506 (32%), Positives = 247/506 (48%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P  I+          + +I  V+ DSR I+ G +FVA+ G + DGH FI
Sbjct: 37  MKLSELLRNVKPIAIHG-------NADVEIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFI 89

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+AQGA A++      L+D  A +      + V +T +     A+  YG       ++
Sbjct: 90  GKAVAQGAVAVL------LEDMPAVMDEKVTYVQVASTEEDAGKVATVFYGNPSRRLKLV 143

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +  + ++ G  +  +    + I         TTP PI L   LS +
Sbjct: 144 GVTGTNGKTTVATLLYNMFRKFGYKTGLLSTVCNYIDDKEVPADHTTPDPIELNCLLSRM 203

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y NAK   F+  
Sbjct: 204 VDAGCEYAFMECSSHAIHQRRISGLEFAGGIFTNLTRDHLDYHKTFENYRNAKKMFFDG- 262

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + A+  ADD     +++    A               + +        ++     G
Sbjct: 263 LPKNAFALTNADDKNGLFMVQNTKAAVKTYSIKRMADFRAKILECHFEGMYLEIEGKEVG 322

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     +L  +  L  V GR E +  +  G  
Sbjct: 323 VQFIGKFNVS------NLLAVYGAAILLGRQPEEILVAMSTLKSVNGRLEPI-QSPEGFT 375

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++L  +L  I  +     G +I V G GG RD+GKRP+M + A+  +D  I
Sbjct: 376 AVVDYAHTPDALANVLAAIHDVLDTKGGHVITVCGAGGHRDKGKRPLMAQEAVKQSDTVI 435

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EAIRTA  M  K DV++VAGKGH
Sbjct: 436 LTSDNPRDEDPQAIIDDMLSGLDAAQRKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKGH 495

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    + NG K    D ++IREI G+
Sbjct: 496 ENYQEI-NGVKHHFDDHEVIREIFGI 520


>gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
 gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
          Length = 492

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 171/500 (34%), Positives = 257/500 (51%), Gaps = 26/500 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++      E + +  I    + +  I  +++DSR ++ G IF A+ G ++DG  +I 
Sbjct: 3   KLKEI-----VEYVREYVIETRGYLDGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIG 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AI++GA A+                 +  ++ V      LS  +   Y    +  NI+ 
Sbjct: 58  DAISKGARAVFFEGEVD------NFERDVALIRVKEIFDVLSKVSLYFYNFPSKHLNIVG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++  S +    +  GL S  IG     I   +  +  TTP P  L + LS + 
Sbjct: 112 VTGTNGKTTTTSLLYHYWKGKGLKSGLIGTIDYRIDEESYPSNFTTPQPQELQEILSKMV 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           ++GV  +++E SSH L   R+DG+ L A  FTNL +DH+D+H+T + YF AK+++F+ L 
Sbjct: 172 NKGVKFLAMEVSSHALSLKRIDGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHLE 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                   +A      E  KR + A  RVL    +   I+LKK    ++   + I+    
Sbjct: 232 D-----EGFAVINRDNEWTKRINLADKRVLWASLEEGDIYLKKYENTNSGMILEIATPLG 286

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D      L G+F +YN L A G+ I +G     + + L     V GR EF+        +
Sbjct: 287 DTVIDTKLRGKFNIYNILFAVGVLIGLGEPLEDISKILSTFKGVKGRLEFIREGQ-NFNV 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + L  +L+ I+  T GR+IVVFGCGGDRD  KR  MG+I+  LAD+ IVT D
Sbjct: 346 IVDYAHTPDGLYNVLQTIKEFTKGRVIVVFGCGGDRDPTKRGKMGEISAKLADVVIVTSD 405

Query: 419 NPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           NPR+EDP KI  EI  GI       +    NR EAI+ AIE+  + D +++AGKGHE   
Sbjct: 406 NPRTEDPMKIIREIEKGIKRVGRLDYFVIENREEAIKKAIEIAKEDDSVLIAGKGHEDYQ 465

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+    K    D +I R+ +
Sbjct: 466 IIGT-IKIPFSDQEIARKYI 484


>gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 493

 Score =  329 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 158/494 (31%), Positives = 241/494 (48%), Gaps = 22/494 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    P L+ QL +         I  V +DSR +  G +F+A  G   DG  FIP A+ +
Sbjct: 8   LPDWDPALLQQLGL--------PIKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEK 59

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A++   A     F+       P L V N R+   + A+ + G       ++ +TGT+
Sbjct: 60  GAAAVLWDEA---DGFAWKAEWQAPNLAVPNLRERAGIVAAHVLGLPSRDLTVVGITGTN 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S++ ++ Q     G  +  IG           +   TTP P+ + + L+    QG  
Sbjct: 117 GKTSISHWLAQAFSLLGQKAALIGTVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAH 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSHGLDQ R++G++     FTNL RDH+DYH + +AY  +K +LF     K   
Sbjct: 177 VVTMEVSSHGLDQFRVNGVEFATAVFTNLTRDHLDYHGSMEAYGESKKKLFFWEGLKH-- 234

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I ADDA+ +++         RV++ G +   +    + A     Q+T++      D  
Sbjct: 235 AVINADDAFGRQLAAGIDPKQTRVVTYGLEQGDVRPLALAATLEGLQLTVATPWGTVDVR 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F   N L         G+        + ++    GR + VG       + +DYA
Sbjct: 295 TGLVGRFNAANLLACLATLCVNGVSLQDAAAVMARIQPARGRMQSVGGAHEPL-VVIDYA 353

Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           HT ++LE  L  +  I    GR+  VFGCGGDRD GKRP+MG IA   AD+A++T DNPR
Sbjct: 354 HTPDALEKALATLSEIRPAGGRLFCVFGCGGDRDPGKRPMMGAIAEKHADVAVLTSDNPR 413

Query: 422 SEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           SEDP+ I  +++ G+       + +R  AI  A+      DV++VAGKGHE    +  G 
Sbjct: 414 SEDPQAIIRDVLAGMDAARAHVEADREAAIHWAVAQARVGDVVLVAGKGHEEYQDIA-GV 472

Query: 480 KKMSVDCDIIREIL 493
           K+   D  +  E L
Sbjct: 473 KRPFSDFRVAEEAL 486


>gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
 gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
          Length = 490

 Score =  329 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 159/480 (33%), Positives = 228/480 (47%), Gaps = 23/480 (4%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            + +  I  +  DSR ++ G +FV + G   DGH F  +A+  GA AIV      +    
Sbjct: 18  DFHDPDITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAERELDV---- 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
                + P+ +V N+++ LS+ +   YG+  + +  + +TGT+GK+S +  V +I +++G
Sbjct: 74  -----SVPVTIVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAG 128

Query: 142 LSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  IG             + TTP  + L K    ++   V    +E SSH L   R+ 
Sbjct: 129 KRTGLIGTMYIKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGRVH 188

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKE 255
           G       FTNL +DH+DYH+T   Y  AK  LF          K   AI+ ADD  S  
Sbjct: 189 GCDYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEASAY 248

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K                     K +          +            L G+F VYN 
Sbjct: 249 YEKVTAAHISTYGIKNDADVM--AKHIKTTAQGTSFELVTNKGTKPITISLVGQFNVYNV 306

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A   CIA GI    V E +E+LH V GRFE V   ++   + VDYAHT +SLE +LK 
Sbjct: 307 LAAVATCIAAGIPFETVAEAVEELHGVRGRFELV-NKNQEFPVIVDYAHTPDSLENVLKT 365

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            + +T G++ VV GCGGDRD+ KRP M KIA+ LAD  I T DNPRSEDP  I  ++  G
Sbjct: 366 CKDMTEGKVFVVVGCGGDRDKTKRPKMAKIAVQLADEPIFTSDNPRSEDPLAILRDMEAG 425

Query: 436 IPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +    +    NR +AI  AI    K DV+++AGKGHET   +   E     D ++    +
Sbjct: 426 VENEYYHSIANREQAIFFAIANARKGDVVLIAGKGHETYQQIGA-ETFDFDDAEVAARAI 484


>gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 487

 Score =  329 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 161/497 (32%), Positives = 252/497 (50%), Gaps = 26/497 (5%)

Query: 10  DFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   L+N L+I    +  ++ I  V  DSR ++ G +FVAI G + +GH +I QA   GA
Sbjct: 3   NLTSLLNNLTIKASLYVEDKPITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRSGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            AIV             +  +   +VV N+   L+L A+  YG   E   ++ VTGT+GK
Sbjct: 63  TAIVCEQ------LPQLLFPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++A+ + Q+ +++G  +  +   +        +   TTP P+ L   L  +  QGV + 
Sbjct: 117 TTIATLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGVKYC 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSHG+DQHR +G+    G FTNL RDH+DYH+T  AY + K R F+  LP  + A+
Sbjct: 177 FMEVSSHGIDQHRTEGLHFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDA-LPSTAFAL 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD     +++             +     H+ +           + +     +    
Sbjct: 236 VNIDDKNGAFMLQNTKAQKKTYALKTHADYKAHIIESRFDG------LLLRINQHEVWTK 289

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF  YN L   G    +G+D    L  +  +  V GRF+    ++ G    VDYAHT
Sbjct: 290 LIGEFNAYNLLAVFGAATLLGVDELEALTLISAIEPVAGRFQ-YAVSATGVITIVDYAHT 348

Query: 366 SNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            ++LE +LK I  I +    +  V GCGG+RD+GKRPIM  IA  L+D  I+T DNPR+E
Sbjct: 349 PDALENVLKTINDIRTHNETLTTVVGCGGNRDKGKRPIMADIATTLSDNVILTSDNPRNE 408

Query: 424 DPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           +PE I +E+  G+            +R +AI++  +   K D++++AGKGHET   +  G
Sbjct: 409 EPEAILSEMEQGVQAQHFHKVQTITDRRQAIQSVCKNAQKGDIVLIAGKGHETYQEIK-G 467

Query: 479 EKKMSVDCDIIREILGL 495
            +    D +I+RE L L
Sbjct: 468 VRHHFDDFEIVREYLEL 484


>gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
 gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
          Length = 493

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 154/505 (30%), Positives = 247/505 (48%), Gaps = 25/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+                  +   I+ ++ DSR +  G +FVAI G+  DG  FI
Sbjct: 2   MQLSELLLSW-----------CELNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENIL 118
             AI QGA A++  +       +  + +N  ++ +D+    LS  A   Y   K    ++
Sbjct: 51  SSAIEQGAVAVIADADEDNIAGTVKVINNAIVVYIDSLYTQLSAIAGAFYQADKRCMQLV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  + Q        +  +G T     S  +    TT SPI + + L+ L
Sbjct: 111 GITGTNGKTTISQIIAQWTTLLDQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTEL 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G    ++E SSHGL Q R++ +   A  FTNL RDH+DYH   + Y  AK  LF   
Sbjct: 171 ENIGAKLTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMENYAEAKKLLFTSH 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTI 293
            PK S     ADD    + +K   +A    L+           +    V       Q+++
Sbjct: 231 RPKHSIIN--ADDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIQLSV 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S +  +  F  PL G F   N LVA    +++G D   + +   +L+ V GR E   T  
Sbjct: 289 SSDWGNVAFSVPLIGAFNASNILVAFATLLSLGYDIQALAQTASQLNAVIGRMELF-TAD 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              ++ VDYAHT ++L+  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD+ 
Sbjct: 348 NKAKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I++DDNPRSE+P  I  +++ G+          +R EA + A+   N+ D++++AGKGHE
Sbjct: 408 ILSDDNPRSEEPSLITNDMLAGLKNSESAHVIHDRFEACQFALSQANENDIILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              ++ +       D +  + +LGL
Sbjct: 468 DYQVLADKTV-YYSDRETAQTLLGL 491


>gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-003]
          Length = 491

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 154/509 (30%), Positives = 238/509 (46%), Gaps = 33/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGAPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADDA S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKG
Sbjct: 401 NPIFTSDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLIL 497
           HE   +V + E     D    R  +   L
Sbjct: 461 HEDYQVVGD-EVIDFDDRVEARIAIEKKL 488


>gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
 gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
          Length = 485

 Score =  329 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 151/507 (29%), Positives = 246/507 (48%), Gaps = 32/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++    P       +     ++ +I  V  DSR +++G +F+A+ G + DGH +I
Sbjct: 1   MKLKEILTSIQP-------VKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+ +GA AI+        +  A +      + V ++   +   A+  YG     +  +
Sbjct: 54  PAAVEKGATAILCE------ELPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK S ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNSFSLTNLDDKNGLVMTQNTKSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPQGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAARASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K D ++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDAILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
               +  G K    D ++++EI  L +
Sbjct: 460 NYQDIK-GVKHHFDDKEVLKEIFSLTV 485


>gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
 gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
          Length = 483

 Score =  329 bits (842), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 204/498 (40%), Positives = 278/498 (55%), Gaps = 25/498 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+ ++                  +I  +S+DSR I+ G+ F AI G+  DG  ++
Sbjct: 1   MRLTELLARN---------DLDPALAGIEIAGLSADSRAIREGFAFFAIPGHAGDGLSYV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA  +V                + P++VVD+ R  L+  A+R + + P  I AV
Sbjct: 52  DDARARGARVVVAQRQSEC---------SLPLVVVDDVRAELAHAAARFHPRQPRVIAAV 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGTSGK+SV + ++QI    G  +  +G    + S       LTTP P+ L + L  L+ 
Sbjct: 103 TGTSGKTSVVASLRQIWTAMGHEAASLGTVGVVDSKGAHYGALTTPGPVELHRILDDLAG 162

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASS G+DQ RLDG++L    FTN  RDH+D+H+  + YF AKMRLF+ L  
Sbjct: 163 RGVTHLAMEASSLGIDQRRLDGVRLSVAGFTNFSRDHLDHHRDMEEYFAAKMRLFDTLSQ 222

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I AD   +  V       G  V  VG +G+ I +++  A      + +   G D
Sbjct: 223 PGRTAVIDADSDVAPRVAAVCEKRGLNVFGVGAKGEAIAVREARAHALATSLKLRHAGVD 282

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G FQ  NALVAAGL IA G D A V   L +L   PGR EF+G    G  ++
Sbjct: 283 YSVELPLAGAFQTSNALVAAGLAIAAGDDPARVFSALNELKGAPGRLEFIG-ERDGAPVF 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L  +R +T  R+IVVFGCGGDRD+GKRP+MG+IA   AD+AIVTDDN
Sbjct: 342 VDYAHKPDALEKVLATLRPLTKRRLIVVFGCGGDRDRGKRPLMGEIAARAADVAIVTDDN 401

Query: 420 PRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PRSED   IRA II G        IE  +R EAI  A+  L   DVLVVAGKGHET  IV
Sbjct: 402 PRSEDANAIRAAIIEGARGGGAEIIEIADRGEAISKAVADLRAGDVLVVAGKGHETGQIV 461

Query: 476 TNGEKKMSVDCDIIREIL 493
            +       D + I + L
Sbjct: 462 GD-RVLPFSDHEAIAQAL 478


>gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 478

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 204/470 (43%), Positives = 271/470 (57%), Gaps = 7/470 (1%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  +++DSR ++ G++F A+ G K DG  FIP AIA GA A++V         +  +
Sbjct: 9   DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLV-----PHGSTVEV 63

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                ++   N R+  +L AS  +G  P  + AVTGT+GK+S A F +QI  R G  S  
Sbjct: 64  PPQVALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAA 123

Query: 147 IGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG    I+  +     LTTP P  L   L+ L+  G+TH  +EASSHGLDQHRLDG+KL+
Sbjct: 124 IGTLGIIAPGWDNSGGLTTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLM 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A +FTNL RDH+DYH + QAY  AK+RLF E+LP+ + A+I AD   +   ++     G 
Sbjct: 184 AAAFTNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGI 243

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            VL  G   + + L       + Q++ + + G+      PL G FQ  NAL A GL +A 
Sbjct: 244 TVLGYGRAARDLRLAAARPTADGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALAC 303

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G D    LE L  L  V GR + V   + G  +YVDYAHT ++LE +LK +R   S R++
Sbjct: 304 GADPVTALEALGSLEGVHGRLQKVAARAHGAPVYVDYAHTPDALETVLKALRPHASRRLV 363

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VVFGCGGDRD GKRP+MG I   LAD  IVTDDNPRSEDP  IRA +    P  IE G+R
Sbjct: 364 VVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEIGDR 423

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +AIR A+  L K DVLV+AGKGHE   IV         D +  R  + L
Sbjct: 424 RDAIRAAVSGLQKGDVLVIAGKGHEKGQIVGT-TVLAFDDAEEARTAVDL 472


>gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
 gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
          Length = 489

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 150/490 (30%), Positives = 236/490 (48%), Gaps = 13/490 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   ++   +Q  E  + ++  D+R +Q G +F+A+ G+  DG +F+ QA  +GA AI+ 
Sbjct: 5   LKQLMAGLNIQAPEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAAAIL- 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131
              +   D       + P + V    + +S  A   Y    + +  + VTGT+GKS+   
Sbjct: 64  ---FDNSDGFVPSELSIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQ 120

Query: 132 FVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +    +  G     +G               TT S I + + L+   ++ V   ++E S
Sbjct: 121 LIANWTELFGQRGGVLGTLGNGLFGQLHATENTTGSAISIQQELARFVAEKVDVAAMEVS 180

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL QHR+  ++  A  FTNL RDH+DYH T QAY  AK  +F++  P+          
Sbjct: 181 SHGLVQHRVSALQFAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPECCILNADDAT 240

Query: 251 AYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           A    + M +A   G       + G F++   V        ++I     D     PL G+
Sbjct: 241 AREWLLQMPQAVVYGIDQQLPEHPGPFVYATDVKYHPQGITISIHSSWGDGVLSAPLLGK 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L A  + + +  D   + +   +L  V GR E  G   +   + VDYAHT + L
Sbjct: 301 FNVSNLLAALAVMLVLQYDFETLCQTASRLQPVTGRMECFGNQDQPL-VVVDYAHTPDGL 359

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L+  R    G +  +FGCGGDRD+GKRP M  IA   AD  I+TDDNPR+EDP  I 
Sbjct: 360 EKALQAARQHCHGHLFCLFGCGGDRDRGKRPQMAAIAEQWADTLILTDDNPRTEDPAAII 419

Query: 430 AEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A++  G+        + +R +AI+ A+      D++++AGKGHE   I+   EK    D 
Sbjct: 420 ADMCAGLQKPEQAHIEHSRPKAIQLALAQAVPGDIILLAGKGHEDYQIIG-KEKHHYSDR 478

Query: 487 DIIREILGLI 496
           + + ++LG++
Sbjct: 479 ETVMQLLGVM 488


>gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 494

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 157/498 (31%), Positives = 249/498 (50%), Gaps = 10/498 (2%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L       L   +S+      +  I  +  DSR I+ G  FVAI G+  DG  FI  A
Sbjct: 3   KELTLTHL--LAPWVSLSHQVCNDVAIQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I QGA AI+  +             +  ++ + +  + LS  ASRL       ++AVTGT
Sbjct: 61  IQQGANAIIAEAGEQNVHGKVEQLGSVSVVYIADLSQKLSQLASRLQPLSYNQLIAVTGT 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+++   + Q  + SG  +  +G T      +      TT + + + + LS L  QG 
Sbjct: 121 NGKTTITQLIAQWLELSGQRAAVLGTTGNGFLESLTPALNTTGNALEIQQTLSELEDQGA 180

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + ++E SSHGL Q+R+  +    G F+NL RDH+DYH T + Y  A+ +L    +   +
Sbjct: 181 QYTAMEISSHGLVQNRVKALSFSVGVFSNLSRDHLDYHGTMEEY--ARAKLSLFTVHDCA 238

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD      ++   N     LS    GK +   +V        ++ S +  +  F
Sbjct: 239 KAVINIDDTVGASWVELLDNCIPVSLSPIQTGKGVFATQVQYSEAGITLSFSGQYGEGRF 298

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL GEF   N +VA    +++GID  +++E   +L  V GR E         ++ VDY
Sbjct: 299 TVPLIGEFNASNVMVAFATLLSLGIDKQILVESASQLKPVLGRMELFH-AQGKAKVVVDY 357

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L  ++   +GR+  +FGCGGDRD GKRP+M  I   LAD+ I+TDDNPRS
Sbjct: 358 AHTPDALEKALLALKVHCNGRLWAIFGCGGDRDTGKRPMMASIGEKLADVVILTDDNPRS 417

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E P  I  +++ G+      I + +R  A+  A++  +  D++++AGKGHE   ++ N  
Sbjct: 418 ESPSAIVKDMLAGMASPENAIVEHDRYNALVHALKHSSGDDIILIAGKGHEDYQVLANET 477

Query: 480 KKMSVDCDIIREILGLIL 497
                D +  + +L L L
Sbjct: 478 VHY-SDRESAQRLLELTL 494


>gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
 gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
          Length = 494

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 235/473 (49%), Gaps = 9/473 (1%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A+V  ++           
Sbjct: 25  IAVEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGLVEWL 84

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G  S  +
Sbjct: 85  NAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVM 144

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G T        +    TT S I + + LS L+ +   + ++E SSHGL Q R+  +    
Sbjct: 145 GTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRAHNAGC 265
           G FTNL RDH+DYH T +    A  +       K   A+I  DD   K  +   ++    
Sbjct: 205 GVFTNLSRDHLDYHGTMEE--YALAKKRLFTQHKCKHAVINVDDEVGKAWMADLSNAIAV 262

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +L +    + +    V       +++        D   PL G+F   N LVA    +++
Sbjct: 263 SLLPLSDYQQSVWASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFATLLSL 322

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GID   +++   +L  V GR E         ++ VDYAHT ++LE  L  +R   SG++ 
Sbjct: 323 GIDKQTLVDTASQLQPVIGRMELF-QVPSKAKVVVDYAHTPDALEKALAALRVHCSGKLW 381

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+        +
Sbjct: 382 AIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPESAFVE 441

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +R +A++ A+E     D++++AGKGHE   ++ +       D +   ++LG+
Sbjct: 442 HDRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKDETIHY-SDRESALQLLGI 493


>gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
 gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
          Length = 508

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 161/480 (33%), Positives = 236/480 (49%), Gaps = 21/480 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR +  G +FVA+ G   DGH FI  AI  GA A+         +  A    +
Sbjct: 36  ITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEAGAVAVACE------ELPAAYSDS 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              LVV + RK L+  +   YG   + +  + VTGT+GK++ A  V  +   SG+++  I
Sbjct: 90  VTWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTTTARLVTSMLNASGVAAGYI 149

Query: 148 GP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     I +       TTP P  L      +   G     +E SSH L   R+ G+   A
Sbjct: 150 GTGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVMEVSSHSLVLDRVHGLFFRA 209

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL  +H+D+H+T + Y  AK  LF++ L  E  A+I ADD  ++ +  R       
Sbjct: 210 AVFTNLTPEHLDFHETMEEYAEAKRLLFDQ-LNAEGFAVINADDPRAEFMAARLAPERVF 268

Query: 267 VLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             S G         +  H     +     +  ++ +G+      PLPG + V N L A  
Sbjct: 269 CCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAMQVPLPGAYNVMNMLEAFT 328

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + + +GID A  L  L     + GR E + +  R     VDYAHT ++L+  L+ +R +T
Sbjct: 329 VGVGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCAVVDYAHTPDALQKALEALRAVT 388

Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
               ++ VVFGCGG+RD+ KRP MG+IA +LAD  I+T DNPR E+PE I  E+  G+ G
Sbjct: 389 PADAKLAVVFGCGGNRDRQKRPEMGRIAAELADRVILTSDNPRDENPEAILDEVEAGMAG 448

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
              +   +R EAIR A+E L   D+L+VAGKGHE    +  G K    D + +      +
Sbjct: 449 RVHLRIADRAEAIRRAVEQLGAGDILLVAGKGHEAYQEI-RGVKHHFSDRECLEACFAQM 507


>gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
 gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 245/504 (48%), Gaps = 34/504 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+++I   +  E+   +        +++I  +  DSR ++AG +FVA+ G + DGH +
Sbjct: 1   MKLENIIESVNVCEIKGNV--------DKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I +AI +GA AIV  +         T+  +   + V +T   +   A+  YG       +
Sbjct: 53  IEKAIEKGASAIVCET------LPDTLNEHVTYIRVADTEDAVGKLATTFYGDPTSKLDL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G     +    + I   A     TTP PI L + L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKVGLLSTVCNYIDGEAIPTDHTTPDPITLNRLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTN+ RDH+DYH+T + Y  AK   F +
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNITRDHLDYHKTFENYLKAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+  ADD     +++                    + +             ++
Sbjct: 226 NLPKTAFALTNADDKNGSVMVQNTKAKIATYSLRTLCEFKGKVLEDGFEGML------MD 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G     VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNREVNVQFIGRFNASNLLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDALR-SKKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L  I  +    GR+I V G GG+RD+GKRPIM + A   +D  I
Sbjct: 339 TAIVDYAHTPDALVNVLNAIHEVLKGRGRVITVVGAGGNRDKGKRPIMAQEAAKQSDRVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +    DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQDIINDMLAGLTKEDMDKVLSIADRKEAIRTACMLAQAGDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +++ EI 
Sbjct: 459 ENYQEIK-GVKHHFDDKEVLAEIF 481


>gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 494

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 147/477 (30%), Positives = 233/477 (48%), Gaps = 9/477 (1%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +     + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A+V  ++      S
Sbjct: 21  ELASIAVEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGS 80

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G  
Sbjct: 81  VEWLDAVPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G T        +    TT S I + + LS L+     + ++E SS GL Q R+  +
Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEDNAVYTAMEISSLGLVQGRVKAL 200

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRAH 261
               G FTNL RDH+DYH T +    A  +       K   A+I  DD   K  ++  ++
Sbjct: 201 DFEVGVFTNLSRDHLDYHGTMEE--YALAKKSLFTQHKCKHAVINVDDEVGKAWMVDLSN 258

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                +L +    + +    V       ++             PL G+F   N LVA   
Sbjct: 259 AVAVSLLPLSGYQQSVWTSDVAYAETGIKLAFDGSWGQGQLSVPLIGQFNASNVLVAFAT 318

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++GID   +++   +L  V GR E         ++ VDYAHT ++LE  L  +R   S
Sbjct: 319 LLSLGIDKQTLIDTAPQLQPVIGRMELF-QVPNKAKVVVDYAHTPDALEKALAALRVHCS 377

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           G++  +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+     
Sbjct: 378 GKLWAIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPEA 437

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
              + +R +A++ A+E     D++++AGKGHE   ++ +       D +   ++LG+
Sbjct: 438 AFVEHDRYQAVKFALEQAGNNDIILLAGKGHEDYQVLKDKTIHY-SDRESALQLLGI 493


>gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
 gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
          Length = 489

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 178/477 (37%), Positives = 268/477 (56%), Gaps = 3/477 (0%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +   + R+ ++  ++ DSR ++ G +F A+ G+   G  FI  A+ QGA AI+  
Sbjct: 3   LSLLGLRGDKGRDPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTD 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +    +  + ++  ++V ++ R  L+  A+  +   PE ++AVTGTSGK+SVASF +
Sbjct: 63  RKGAEIAAAELVGADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTR 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI Q  G  +  +G       +      TTP PI L + L+  ++ GVTH ++EASSHGL
Sbjct: 123 QIWQALGHKAISLGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ RLDG++L AG+FTN  +DH+DYH+    YF AK  LF+ +L + + A+I  DD   +
Sbjct: 183 DQRRLDGVRLKAGAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGR 242

Query: 255 EVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++ + A   G ++ ++G   +    +         Q +     G+       L G FQ  
Sbjct: 243 QMAQIAGERGLKLTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAE 302

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L AAGL IA G ++  V+E L  L  V GR E       G  ++VDY+H   +L   L
Sbjct: 303 NVLAAAGLAIAAGDEAPRVIETLPGLTTVRGRMELAAVRENGAAVFVDYSHKPGALASAL 362

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +++R    GRI+VVFG GGDRD+ KRP+MG+ A   AD+  VTDDNPRSEDP  IRAE++
Sbjct: 363 QSLRPHVMGRIVVVFGAGGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAEVM 422

Query: 434 HGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            G  P  IE G+R EAI   ++ L   D L++AGKGHET  I+ + +     D +  
Sbjct: 423 AGAGPDAIEVGDRAEAILRGVDALQPGDALLIAGKGHETGQIIGS-DVYPFDDAEQA 478


>gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
 gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
          Length = 493

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 155/495 (31%), Positives = 247/495 (49%), Gaps = 9/495 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      +++    +         ++E+  DSR +Q G  FVA++G   DG  FI  AI 
Sbjct: 1   MTKAISMDVLLSPWVDCPSLSSVLVSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A +  +       +  I  + P++ +D   + LS  A ++Y     +++ VTGT+G
Sbjct: 61  QGANAALAQACDVKTHGTVEIIDDVPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q  +     +  +G T     +  Q    TT + + + K LS L++Q  T+
Sbjct: 121 KTTITQLIAQWLELLDHKAAVMGTTGNGFLNNLQQAANTTGNAVEIQKTLSSLANQQATY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T +    A  +L      +   A
Sbjct: 181 TALEVSSHGLTQGRVKALSFAAGVFTNLSRDHLDYHGTMEE--YANAKLGLFTQHQCERA 238

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD    +   +  NA    L         I   +V    +   +    +       
Sbjct: 239 IINVDDEVGHQWASQLSNAIAVSLKANTEFESAIWATEVSYAESGITIKFDGKFGSGKLH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G +   +LE   +L  V GR E   T  R  ++ VDYA
Sbjct: 299 APLIGEFNATNLMLAFATLLSLGKEKQALLETAGQLQPVLGRMELFQTEDR-AKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCEGQLWAIFGCGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP +I  +++ G+      I + +R +A+  AIE  +  D++++AGKGHE    + NGE 
Sbjct: 418 DPVQIVKDMLAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKGHEDYQ-IRNGET 476

Query: 481 KMSVDCDIIREILGL 495
               D +   ++LGL
Sbjct: 477 IHYSDRESAMQLLGL 491


>gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 493

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 235/504 (46%), Gaps = 27/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+ L+                +    +I  +  DSR I +G  FV I G   DGH ++
Sbjct: 1   MELKKLLE------CLTFYNVNGEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA AI  S                PI+ V++T + L++ A + Y    ++   +
Sbjct: 55  DQAVKNGASAIFTSK-------PLMKEYGVPIIQVEDTNRALAMLAVKYYDYPTKHFPLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   + +I +     +  IG     I         TTP+ + L K    +
Sbjct: 108 GVTGTNGKTTVTYLLDKIFEYHQKKAGVIGTIQVKIGEETFPIVNTTPNALELQKTFHVM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             + V    +E SSH LD  R+ G       FTNL +DH+DYHQ  Q Y  A      +L
Sbjct: 168 REKDVKQGIMEVSSHALDMGRVYGCDYDIAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 ++    I  DD  S  ++KR+        S   +   +  K +    +  +  +
Sbjct: 228 GNGYDSEKEKYAIINDDDSSSHLLKRSTAQHVITYSCKKEATIM-AKDIELTASGIRFKL 286

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +      L G F VYN L A+   IA  +   ++ + LE +  V GRFE +    
Sbjct: 287 HSPLGNITIQSRLMGMFNVYNMLAASAAAIASKVPLNVIQQALESIEGVNGRFEPI-VEG 345

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VD+AHT +SLE +L+ I+      + VV GCGGDRD+ KRP+M ++AL+ AD A
Sbjct: 346 QNYSVIVDFAHTPDSLENVLQTIKDFAKRNVYVVVGCGGDRDRKKRPLMAEVALNYADHA 405

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + T DNPR+EDP+ I  ++   +      +    +R E I  AI+   K D++++AGKGH
Sbjct: 406 VFTSDNPRTEDPQAILDDMTAELDANSGSYEVVVDRKEGIAKAIQSAQKDDIVLIAGKGH 465

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  I+ +  K    D D+ R  +
Sbjct: 466 ETYQIIGH-TKYDFDDRDVARNAI 488


>gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
 gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
          Length = 485

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 162/504 (32%), Positives = 247/504 (49%), Gaps = 33/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+       IN          +  I  ++ DSR I+AG +FVA+ G + DGH FI
Sbjct: 1   MKLTDLLKGVKTLNING-------NADIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA+A++V       D    ++ +   + V +T   +   A+  YG   +   ++
Sbjct: 54  NKAIELGAKAVLVE------DMPTDLKEDVTYVQVASTETEVGKIATIFYGNPTKKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + ++ G     I    + I   A+    TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRKFGYKVGLISTVCNYIDDEARPTDHTTPDPIELNQLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E SSH + QHR+ G+    G FTNL RDH+DYH+T + Y NAK   F+  
Sbjct: 168 VAAGCEYAFMECSSHAIHQHRIGGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDS- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K + AI  ADD     +++                    + +        +V     G
Sbjct: 227 LSKNAFAITNADDKNGMIMVQNCKANIKTYSMQRMADFRAKIIECHFEGMYLEVDGKEVG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G     +L  L  L  V GR + V  +  G  
Sbjct: 287 VQFIGKFNVS------NLLAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVH-SPEGFT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             VDYAHT ++LE +L  I  +    +G++I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 340 AIVDYAHTPDALENVLGAIHDVLEGKNGKVITVCGAGGNRDKGKRPLMAQEAVKQSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  +++ G+        +   +R EA+RTA  M  K DV++VAGKGH
Sbjct: 400 LTSDNPRFEDPQAIIDDMVAGLDANQRKKVLTIVDRREAMRTAAMMAKKGDVILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +++REI 
Sbjct: 460 EDYQDIQ-GVKHHFDDHEVLREIF 482


>gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 500

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     G    ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +A        +  +        V       ++       + +    L G F V N L A 
Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E             + VDYAHT ++LE  L+  
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAVIAEELADKVIATDDNPRTEDNAKIMADILNGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
          Length = 483

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 206/478 (43%), Positives = 276/478 (57%), Gaps = 17/478 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +I  V++DSR ++AG +F A+ G K DG             A  + +  +       
Sbjct: 14  ADPEITGVTADSRKVRAGTLFAALPGTKVDGAS---------FAAAAIQAGAAAVIADRD 64

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +    P +V  + R+  +L A+  +G+ P+  +AVTGT+GK+SVA+F +Q+  R+G +S 
Sbjct: 65  LGLPVPTIVAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSA 124

Query: 146 QIGPTSTI-------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G                    LTTP    +A+ L+ ++  GV+H ++EASSHG+DQ R
Sbjct: 125 SMGTLGVTVSRPDGTHEQLTPPGLTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRR 184

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LDG+KL A  F NL +DH+DYH T +AY  AK+RLFE LLP+   A++ AD         
Sbjct: 185 LDGVKLTAAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNADSDAFPAFAA 244

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A  AG  V+ VG  G  + L K   +   Q + I  EG+  D   PL G FQ  NALVA
Sbjct: 245 AAVIAGQWVMPVGETGATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVA 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AGLC A G+    V   LE L   PGR + VG  +RGG  YVDYAHT + LE +LK +R 
Sbjct: 305 AGLCWAAGLTLEEVFAGLEALEGAPGRLQRVGQGARGGEAYVDYAHTPDGLETVLKALRP 364

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              GR+IVVFG GGDRD+GKRP+MGK+A +LAD+AIVTDDNPRSE P  IRAE++ G PG
Sbjct: 365 HVRGRLIVVFGAGGDRDRGKRPLMGKVAGELADVAIVTDDNPRSEVPAAIRAEVLAGCPG 424

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             E G+R EAIR A+ ML   D+LVVAGKGHE   IV  G      D     + L L+
Sbjct: 425 AAEIGDRREAIREAVAMLRDGDILVVAGKGHEQGQIVG-GVTHPFDDVAETAQALELV 481


>gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51]
 gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 496

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 169/503 (33%), Positives = 246/503 (48%), Gaps = 19/503 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+++ +  K   E+ + + I      ++  I  +  DSR +Q G ++  + G   DGH F
Sbjct: 2   MRVKSV-RKRLSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
             QAIAQGA A++V            +  + P L V   R+ +   A+ LY        +
Sbjct: 61  AAQAIAQGAAALLVER---------ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEV 111

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++   V+ I    G     IG     I+        TTP  I L K L  
Sbjct: 112 VGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKE 171

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV    +E SSH L   R+ G +  AG F+NL +DH+DYH+T + Y  AK +LF  
Sbjct: 172 MVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSG 231

Query: 237 LL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           L   KE    +   D  + E + R   A      V         + +    +  + T+  
Sbjct: 232 LTGVKEPKVGVVNGDDPAAETLIRLSAAPVVTYGVNADLLDYRAEDILLTADGVKFTVRF 291

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G +    +  PG F VYNAL A    +  G     V E L  +  VPGRFE V      
Sbjct: 292 KGGESQVEYSTPGMFSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQ-P 350

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I VDYAHT + LE + +  +  T GR+I VFGCGGDRD+GKRP MG IA +L+D  IV
Sbjct: 351 FQIIVDYAHTPDGLENVCRTAQEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDHVIV 410

Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPR+EDP +I  +I+ GI    +    NR EAI  A  +  + D +++AGKGHE   
Sbjct: 411 TSDNPRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKGHEDYQ 470

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+   +     D ++ RE L  +
Sbjct: 471 IIG-KDVFPFDDREVAREALRRL 492


>gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 487

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 147/504 (29%), Positives = 243/504 (48%), Gaps = 30/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+        +      +  +   I  +  DSR ++ G +F+ I G   DGH F 
Sbjct: 1   MDLRELLT-------HLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA AI+      ++     +          +T++ +++ A   Y +  + +  +
Sbjct: 54  QMAVEKGAVAILAEKPVDVEVPVVRV---------KSTKRAMAVLADAFYNQPTQKMHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++   ++ I +     +  IG     I   + D + TTP  + L K    +
Sbjct: 105 GVTGTNGKTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             + V    +E SSH LD  R+ G       F+NL +DH+DYH T + Y  AK       
Sbjct: 165 VEENVEVAMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +   A++ ADDA ++E +K              +   I    +   ++     
Sbjct: 225 GNAYNHNRPKFAVLNADDAATEEYIKNTAATVITYGI--DRDSDIRATNIQITNSGTTFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++   +       L G+F VYN L A   C+  GI  ++++E ++ L  V GRFE V   
Sbjct: 283 LTTPTETVRVEMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVV-DA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK ++      I V+ GCGGDRD+ KRPIM +IA + +  
Sbjct: 342 EQDFTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQ 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI+T DNPRSEDP  I  ++  G+    ++   +R EAIR A+E  +  DV+V+AGKGHE
Sbjct: 402 AILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVEAAHADDVVVIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T  I+   +     D ++ R+++ 
Sbjct: 462 TYQIIG-KKVFDFDDREVARKMIE 484


>gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 482

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 242/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       +      E+ I  V+ DSR + AG +F+A+ G + DGH +I
Sbjct: 1   MKLSELLKTIQP-------VQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA A++        D       N   + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIEKGAIAVLCE------DMPEEPTPNITYIQVKDSENAVGKVATAFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRHFGYKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLSDFKGKILESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F  YN L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNRELAVRFIGKFNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFD-SIRSPKGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHDVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R EAI+TA  +    DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRKEAIKTAYMLAQPGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D +II+EI+ 
Sbjct: 460 NYQEIK-GVKHHFDDKEIIKEIMN 482


>gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
 gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
          Length = 493

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 18/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+                +  +  +  +  DSR ++ G  FVAIVG+  DG  +I
Sbjct: 5   MNLTNLLAPWL---------DCPELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI QGA A++  S           + N  I+ ++   + LS  A RLY     +++ V
Sbjct: 56  EKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++   + Q  + +G  +  +G T        Q    TT + + + K L+ L  
Sbjct: 116 TGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQ 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +A   AK ++      
Sbjct: 176 QGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEA--YAKAKMTLFTEH 233

Query: 240 KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +   AII  DD    +  +      G  +       K +    V    +   +       
Sbjct: 234 QCQHAIINLDDEVGAQWFQELQQGVGVSLFPQDASVKALWASSVAYAESGITIEFDGCFG 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL GEF   N L+A    +A+G+D   +L+    L  V GR E    N    ++
Sbjct: 294 QGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVN-SKAKV 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  LAD  ++TDD
Sbjct: 353 VVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVLTDD 412

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AGKGHE   ++
Sbjct: 413 NPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDYQVL 472

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D +  +++LG+
Sbjct: 473 KHQTVHY-SDRESAQQLLGI 491


>gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 486

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 150/502 (29%), Positives = 242/502 (48%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+++DLIYK          I      +  +  +  DSR ++ G +F+A+ G   DGH FI
Sbjct: 1   MQIKDLIYKV-------SLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
              I +GA A+V       +       ++  I+ V ++ + L + AS  Y        ++
Sbjct: 54  ADVIQKGATAVVCE-----ELPEIESTADCTIIQVKDSAEALGMIASNFYDSPSSKLKLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  + + ++ ++ G  +  +    + I         TTP  I L K L+ +
Sbjct: 109 GVTGTNGKTTTVTLLYRLFRKLGYKTGLLSTVENIIEDKVVQATHTTPDAISLNKLLADM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G TH  +E SSH   Q R+ G++   G F+N+  DH+DYH+T   Y  AK  LF + 
Sbjct: 169 VKAGCTHCFMEVSSHAAVQRRIAGLQFAGGLFSNITHDHLDYHKTFDEYIKAKK-LFFDG 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP +S A+I +DD   + +++           +        L             + ++ 
Sbjct: 228 LPNDSFALINSDDKRGRVMIQNTRAKTYTYSLLALADFKGKLISTTMQG------LEMDV 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F L G F  YN L      + +G D   VL  L  +    GRFE   + +R   
Sbjct: 282 DGIQAWFRLIGNFNAYNLLAVYATAVLLGEDKEEVLMQLSTIEAANGRFEQQISATR-IT 340

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDYAHT ++L+ +L+ I  +  + +II V GCGG+RD  KRP+M  IA   +D  ++T
Sbjct: 341 VIVDYAHTPDALKNVLETITELKGANKIITVVGCGGNRDAAKRPVMADIACQFSDHVVLT 400

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR+E+P+ I  E+  G+        +   +R EAI+ A  + +  D+++VAGKGHET
Sbjct: 401 SDNPRNEEPQAILTEMEKGVRIVDKKKVLSVLDRKEAIKVACTLASTGDIILVAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    D  II+E+L
Sbjct: 461 YQEIK-GVKYPFDDRLIIKELL 481


>gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1058

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 185/490 (37%), Positives = 268/490 (54%), Gaps = 13/490 (2%)

Query: 7    IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              K    L +   + P + ++  +   + DSR ++ G++F A  G K +G  FI +AIA 
Sbjct: 576  TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFIEKAIA- 633

Query: 67   GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                   + A ++             LV +N R   +  A+R Y   P  + AVTGT+GK
Sbjct: 634  -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 686

Query: 127  SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            +SVA   +Q+   +G  +  IG      +  +    +TTP  +      S L+   ++HV
Sbjct: 687  TSVAELCRQLWTIAGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 746

Query: 186  SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              EASSHGLDQ+R DG K+IAG+FT+  RDH+DYH T + Y  AK+RLF+E +  +  A+
Sbjct: 747  IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 806

Query: 246  IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            ++ADD  +  V+      G +++ +G + + I L    A    Q +T+S++G+ +    P
Sbjct: 807  VWADDPAATTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIQGESYKIRLP 866

Query: 306  LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            L G +Q+ NALVAAGL +A G D    +  L  L  V GR E    +  G  +YVDYAHT
Sbjct: 867  LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 926

Query: 366  SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             + L   ++ +R  T GR+ VVFG GGDRD+GKRP MGKIA +LAD  IVTDDNPR ED 
Sbjct: 927  PDGLRAAIEALRPHTEGRLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 986

Query: 426  EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKM 482
              IR EI+ G P   E G R EAI +AI+   K D++++AGKGHE   I+  GE      
Sbjct: 987  ATIRKEILVGSPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 1046

Query: 483  SVDCDIIREI 492
              D  + +E 
Sbjct: 1047 FDDVTVAKEA 1056


>gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 18/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+                +  +  +  +  DSR ++ G  FVAIVG+  DG  +I
Sbjct: 5   MNLTNLLAPWL---------DCPELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI QGA A++  S           + N  I+ ++   + LS  A RLY     +++ V
Sbjct: 56  EKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++   + Q  + +G  +  +G T        Q    TT + + + K L+ L  
Sbjct: 116 TGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQ 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +A   AK ++      
Sbjct: 176 QGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEA--YAKAKMTLFTEH 233

Query: 240 KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +   AII  DD    +  +      G  +       K +    V    +   +       
Sbjct: 234 QCQHAIINLDDEVGAQWFQELQQGVGVSLFPQDASVKALWASSVAYAESGITIEFDGCFG 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL GEF   N L+A    +A+G+D   +L+    L  V GR E    N    ++
Sbjct: 294 QGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVN-SKAKV 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  LAD  ++TDD
Sbjct: 353 VVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVLTDD 412

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AGKGHE   ++
Sbjct: 413 NPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDYQVL 472

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D +  +++LG+
Sbjct: 473 KHQTVHY-SDRESAQQLLGI 491


>gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 482

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 246/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+    P       +      + +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +           + ++ 
Sbjct: 227 LPKSAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEG------MLLDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. Y412MC61]
 gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
 gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC61]
 gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
          Length = 489

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 155/503 (30%), Positives = 238/503 (47%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+        +    +        I  +  DSR +  G +F  + G   DGH F 
Sbjct: 1   MKLLTLLS-------HLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+A+GA AIV     S+         + P+++V ++R+ +++ A   YG+    +  +
Sbjct: 54  EEAVARGAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  S ++QI +++G  +  IG         +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NA      +L
Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 +     +   D    +  K    A      +  +   +  +++          +
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVM-AEQIRITAGGMAFRL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G F VYN L AA  C+A G     +   L  +  VPGRFE V    
Sbjct: 284 CTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV-DEG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD+ KRP+M ++A+  AD+A
Sbjct: 343 QNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYADVA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I T DNPRSEDP++I  ++  G+       +   +R EAIR AI    + DV+++AGKGH
Sbjct: 403 IFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET  I+ N +     D  + R  
Sbjct: 463 ETYQIIGN-DVIEFDDRAVARAA 484


>gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
 gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
          Length = 491

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 147/508 (28%), Positives = 228/508 (44%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+                     ++N+++ DSR +  G +F+ I G   DGH F 
Sbjct: 1   MKLSELMQAIPV-------FTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA AI+      +           P++ V +T++ +++ A+  YG   +   ++
Sbjct: 54  KKAEELGAVAIIAEKTVDVA---------IPVIYVRDTKRAMAMLANYFYGSPTQALKLV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             QGV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK       
Sbjct: 165 LLQGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                      A++ ADD  S  +                         +    +     
Sbjct: 225 GNSYHSSNPKIAVLNADDEESVRMQTATAAHVITFGI--KAAADFRASNIQITSHGSTFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +   G  F     + G F VYN L A     A+ I     +  +E +  V GRFE V   
Sbjct: 283 LDTPGGHFKLKIKMIGNFSVYNVLAAIATSYALHIPLDNAISTVEAIPGVKGRFELVHAG 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDY+HT + L  +L+ I      R+ VV GCGGDRD+GKRP M K+A+  A  
Sbjct: 343 Q-DFPVIVDYSHTPDGLLNVLQTISEFAEKRVFVVVGCGGDRDKGKRPQMAKVAVKYATN 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + T DNPRSE+P +I  ++I G+P    ++   NR +AI+ AI      DV+++AGKGH
Sbjct: 402 PVFTSDNPRSENPREIIEDMIKGVPENDSYVVHENRRDAIQYAISKAETGDVILIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497
           E   I+ + E     D    R  +   L
Sbjct: 462 EDYQIIGD-EVIDFDDRVEARIAIEKKL 488


>gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 500

 Score =  328 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 231/480 (48%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R+   +++V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     G    ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +A        +  +        V       ++       + +    L G F V N L A 
Sbjct: 262 DAVAVSTDASFSSEHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E             + VDYAHT ++LE  L+  
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQTNEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
 gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
          Length = 482

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 245/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+    P       +      + +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +             ++ 
Sbjct: 227 LPKSAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML------LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 488

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 152/477 (31%), Positives = 238/477 (49%), Gaps = 13/477 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  + E++ DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q      
Sbjct: 15  DINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQQHLQVHY 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
               P++      + LS  A   Y    +++  + VTGT+GK++ A  + Q  Q  G + 
Sbjct: 75  EQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQLLGHTG 134

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G          ++   TT S + +  +L+   ++G    ++E SSHGL QHR++ + 
Sbjct: 135 AVMGTIGNGLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQHRVESVH 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN- 262
             A  FTNL RDH+DYH T + Y  AK RLF EL  +       ADD      +    + 
Sbjct: 195 FSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQII--DADDPVGAVWLAEMPHA 252

Query: 263 --AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +   +  Q  ++    V   H    +       + +   PL G F V N L+   
Sbjct: 253 VAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNLLLVTA 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G   + ++  + KL  V GR E +    +   + VDYAHT ++LE  L+  R   
Sbjct: 313 TLLTLGYPLSGLINSVHKLTGVCGRMEILH-APQKPTVIVDYAHTPDALEKALQAARLHC 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
            G++  +FGCGGDRD GKRP+M +IA  LAD  I TDDNPR+E+P+KI A+I++G     
Sbjct: 372 RGKLWCIFGCGGDRDSGKRPLMARIAEQLADHVIATDDNPRTEEPKKIMADILNGFVHPQ 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                  R +AI TAI+   + DV+++AGKGHE   I+    K    D ++ R  L 
Sbjct: 432 SVQVIHQRAQAIATAIKSAVENDVILIAGKGHEDYQIIG-KTKYHFSDQEVARNYLS 487


>gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 482

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 155/503 (30%), Positives = 244/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+    P       +      + +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +             ++ 
Sbjct: 227 LPKSAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML------LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  +  G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPLGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTISIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
          Length = 492

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 147/511 (28%), Positives = 232/511 (45%), Gaps = 40/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
            +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222

Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           LF           +  A++ ADD   +   K               G  +  K +     
Sbjct: 223 LFARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPK 280

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E
Sbjct: 281 GIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRME 340

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +   ++   + VDYAHT ++LE +L  IR    G+II VFGCGGDRD  KR IMG IA 
Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTIREFAKGKIITVFGCGGDRDAKKRSIMGGIAG 399

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVL 462
             +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++
Sbjct: 400 SYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIV 459

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHET  I+ +       D +  R+ +
Sbjct: 460 LIAGKGHETYQILKDST-IHFDDKEKARQAI 489


>gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
          Length = 487

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 143/502 (28%), Positives = 229/502 (45%), Gaps = 26/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +++L  K    + +    +P ++   ++  +S +S+ I+ G++F AI GN+ DGH FI
Sbjct: 1   MTVKELFDKSNIRIEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            +A    A   VV       +           + V +T + L   +   Y    + +   
Sbjct: 61  QEAFKNKAIGAVVEKDVDYVNT----------IKVRSTLQALRETSLVFYDYPFKKLFLG 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSY 176
           +VTGT+GKS++   +     +    SF +G           +    TTP    + + L  
Sbjct: 111 SVTGTNGKSTITWILSHAVNKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQ 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                + +  +E SSH L   RL GI+  A  FTNL RDH+D+H + + YF  K  LF  
Sbjct: 171 AIQLDMKYGFLEVSSHALKLGRLHGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTS 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              KE+  ++   D     +       G +                          + + 
Sbjct: 231 TYLKENAFVVINIDD----LYGINLYNGIKDFRKASFSLENEKASFFGKFEPVDRGVCLL 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +      P+ G F   N L A      +GI+   + +    L    GR E     ++  
Sbjct: 287 VEGQKVFAPIYGRFNASNLLGAYTFLRMMGIEKDKLGDAFVDLVAPYGRLE--CVQTKPF 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +I++DYAHT + LE +LK++R +   +II+VFG GG+RD+GKRPIMG+IA   +D  I+T
Sbjct: 345 KIWIDYAHTPDGLEKVLKSLRDMVEKKIILVFGAGGNRDKGKRPIMGRIAAQFSDYTIIT 404

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR EDP  I  EI  G        F    +R EAI+ AIE+    D +++AGKGHE 
Sbjct: 405 SDNPRYEDPMSIIDEIKSGFLSVKNSNFEILSDRREAIKRAIEIARDNDAIIIAGKGHED 464

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              + NG K    D ++++E++
Sbjct: 465 YQEI-NGVKYPFSDKEVVKELI 485


>gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 501

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 156/480 (32%), Positives = 227/480 (47%), Gaps = 22/480 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  ITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGAGLVLAEADEGQTEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL 142
             R++  ++ V N  + LS  A   Y    E +  + VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     G    ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH+T + Y  AK RLF EL  K     + ADD   +E + +  
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQV--LNADDEVGREWLAKLP 261

Query: 262 NAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           NA        +           V       ++       + +    L G F V N L   
Sbjct: 262 NAVAVSTDASFSSDHKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTTL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              + +G D   ++E    L  V GR E             + VDYAHT ++LE  L+  
Sbjct: 322 ASLLVLGHDLQKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAA 381

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG- 435
           R  T G +  +FGCGGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A I+ G 
Sbjct: 382 RLHTEGELYCIFGCGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNTKIMANILKGF 441

Query: 436 --IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +       +R +AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 442 VQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 500


>gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium vitis S4]
 gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase
           [Agrobacterium vitis S4]
          Length = 486

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 238/495 (48%), Positives = 311/495 (62%), Gaps = 14/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   DF +L   L        + +I  +++DSR ++ G +FVA+ G K DG  F 
Sbjct: 1   MKLRDLASGDFGDLTGPLD---GPVGDVEITGITADSRKVEPGMLFVALQGVKADGAGF- 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A  V+   +     + +    P LV D  R  L+L A+R+Y   PE ++AV
Sbjct: 57  --------VADAVARGAAAVLSGSHLDIAVPALVTDQPRHALALLAARVYSGQPETMVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +GL+S QIG T  IS    D   LTTP P+ L + L+ L+ 
Sbjct: 109 TGTAGKTSVASFTRQIWAYAGLASAQIGTTGVISPTRSDYGSLTTPDPVALHQLLADLAQ 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHGLDQ RLDG++L A +FTNLGRDH+DYH T   Y  AKMRLF+ LLP
Sbjct: 169 EGVTHAAMEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K SPA+I+ADD +S E ++ A  AG  V +VG  G F+ LK+V    +KQ   I  +G  
Sbjct: 229 KGSPAVIFADDEWSAEAIRVARQAGHDVRTVGRAGDFLSLKRVEHFRHKQIAEIHHQGAI 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   PL G+FQ+ NALV+AGL I+ G++++L L+ LEKL    GR E VG  + G   Y
Sbjct: 289 FEVDLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQANSGALAY 348

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L  +R  TSGRIIVVFGCGGDRD+GKRPIMG+IA  LADI IVTDDN
Sbjct: 349 VDYAHKPDALEKVLTAVRPFTSGRIIVVFGCGGDRDKGKRPIMGEIADRLADIVIVTDDN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE    IR+E++   P  IE G+R +AIR A+ ML   D L+VAGKGHE   IV    
Sbjct: 409 PRSEVAATIRSEVMAATPKGIEIGDRAQAIRAAVAMLATGDTLIVAGKGHEEGQIVGAQT 468

Query: 480 KKMSVDCDIIREILG 494
                D   IR+ + 
Sbjct: 469 -LPFSDHAEIRKAME 482


>gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 494

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 158/501 (31%), Positives = 242/501 (48%), Gaps = 20/501 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++ +   +L+    I         + ++  DSR +  G +FVAI G++ DG  FI QA+A
Sbjct: 1   MLSRALDQLMRPFGITAPALA---LTDIQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVA 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
           QGA A++                  P L + +    LS  A   Y +    +  + +TGT
Sbjct: 58  QGATAVLFEEDGEF----VAPALGVPCLGIPDLPARLSELAGYFYDQPASKLDLVGITGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GKS+ A  V   C   G  +  +G           +   TT S + +   L+ L +QG 
Sbjct: 114 NGKSTTALLVANWCTLLGGKAGVMGTIGNGLFGELVEAENTTGSAVQVQANLAALQAQGA 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++E SSHGL QHR+  +   A  FTNL RDH+DYH T +AY  AK  L +  L  E 
Sbjct: 174 DLVAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVAEP 231

Query: 243 PAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            A++ ADD   ++ +                G+ G+ +  +         +  I+    +
Sbjct: 232 CAVLNADDRLGRQWLAAYPAAVAFSVHGPVAGHPGRQLTAQDPHFHQQGFRTQINSSWGN 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G F V N L A G  + +G D   +L    +L  V GR E  G         
Sbjct: 292 GVLSAPLLGRFNVSNVLAAMGAMLVLGYDFDELLASAPQLQPVTGRMECFGGGKAPL-AV 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L+ +R    GR+  + GCGGDRD+GKRP+M  +A   AD  I+TDDN
Sbjct: 351 VDYAHTPDALEKALQALRVHCEGRLWCLVGCGGDRDRGKRPMMAAMAELHADRVILTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR+E+P +I A+++ G+        + +R +AI  A+   +KQD+++VAGKGHE   I+ 
Sbjct: 411 PRTEEPARIMADMVAGLRDPGAVQIEHDRTKAIELALSQASKQDIILVAGKGHEDYQIIG 470

Query: 477 NGEKKMSVDCDIIREILGLIL 497
             +K+   D + +   L  +L
Sbjct: 471 T-DKRHYSDRETVAAALHTLL 490


>gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
 gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
          Length = 495

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 169/503 (33%), Positives = 246/503 (48%), Gaps = 19/503 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+++ +  K   E+ + + I      ++  I  +  DSR +Q G ++  + G   DGH F
Sbjct: 1   MRVKSV-RKRLSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDF 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
             QAIAQGA A++V            +  + P L V   R+ +   A+ LY        +
Sbjct: 60  AAQAIAQGAAALLVER---------ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEV 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++   V+ I    G     IG     I+        TTP  I L K L  
Sbjct: 111 VGVTGTNGKTTITYLVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV    +E SSH L   R+ G +  AG F+NL +DH+DYH+T + Y  AK +LF  
Sbjct: 171 MVDEGVQLAVMEVSSHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSG 230

Query: 237 LL-PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           L   KE    +   D  + E + R   A      V         + +    +  + T+  
Sbjct: 231 LTGVKEPKVGVVNGDDPAAETLIRLSAAPVVTYGVNADLLDYRAEDILLTADGVKFTVRF 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G+     +  PG F VYNAL A    +  G     V E L  +  VPGRFE V      
Sbjct: 291 KGEAEQVEYSTPGMFSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQ-P 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I VDYAHT + LE + +  +  T GR+I VFGCGGDRD+GKRP MG IA +L+D  IV
Sbjct: 350 FQIIVDYAHTPDGLENVCRTAQEFTQGRLITVFGCGGDRDKGKRPQMGAIAEELSDHVIV 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T DNPR+EDP +I  +I+ GI    +    NR EAI  A  +  + D +++AGKGHE   
Sbjct: 410 TSDNPRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKGHEDYQ 469

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+   +     D ++ RE L  +
Sbjct: 470 IIG-KDVFPFDDREVAREALRRL 491


>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 968

 Score =  327 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 163/501 (32%), Positives = 248/501 (49%), Gaps = 24/501 (4%)

Query: 6   LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +  K   EL   +    ++     KI ++  DSR +  G +FVAI G   DGH FI QA+
Sbjct: 1   MAMKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
            +GA AI+      + + +A       +L V N    L +     +      +  + +TG
Sbjct: 61  EKGACAILTEREIEIPEGAAA------VLRVPNLAAALEVIVPFFHDYPSRKMRIIGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++ +   + I + +G     IG     +   A     TTP  + L + L+Y++ +G
Sbjct: 115 TNGKTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRG 174

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EEL 237
           +  V +E SSH LDQ+R+ GI+     FTNL +DH+DYH+T + Y  AK RLF     + 
Sbjct: 175 MDFVVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKG 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A++  DDA  + ++  A  A                + +       ++T++   
Sbjct: 235 AKEGKTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAAL--RAENIRVHARGLELTLAGAF 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    + G F VYN + A G  +A  I    +   LE    VPGRFE V        
Sbjct: 293 GRMDLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQA-FS 351

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDYAHT + LE IL   R I +GRI+ VFGCGGDRD+ KRPIMG+IA  L+D+ +VT 
Sbjct: 352 IIVDYAHTPDGLENILNTAREIAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTS 411

Query: 418 DNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR+EDP +I  E+  G+          +  +R  AI  A+ +  K D++++AGKGHE 
Sbjct: 412 DNPRTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHEN 471

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
             I+ + +     D ++ RE 
Sbjct: 472 YQILKD-KTIHFDDKEVAREA 491



 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 162/455 (35%), Gaps = 38/455 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   +++ +D+R I AG +FVA+ G + DG  F  QA+ +GA  ++V    ++    A
Sbjct: 520 AADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEA 575

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +     +L   +T       A+    K    ++A+TG++GK++              ++
Sbjct: 576 KLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKDL----------TA 625

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGI 202
             +G    +   A +       P+ L    +   +       VE    GL Q        
Sbjct: 626 AVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEA-----AVVEIGMRGLGQIAALAPLA 680

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G  H++   + +    AK  L E  +      I+ ADDA    + ++A  
Sbjct: 681 APTVAIVTNVGEVHMELLGSIENIARAKAELVEA-VEPGGTVILNADDARVLAMREKAKA 739

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALV 317
               V     +   +    V       +  +  +      +  +   P+PG   V NAL 
Sbjct: 740 GVRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALA 799

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A      +G+  A V   L        RF      +    +   Y  +  S    LK + 
Sbjct: 800 AIAAARVLGLSLADVRRGLAVPPAQKMRFAVEKCGAY-TFVNDAYNASPVSTRASLKTLA 858

Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            + +GR I V G     G   +     +G+ A  L   A++     R E+   I      
Sbjct: 859 EMFAGRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVL----SRGEESRFIAEAAKA 914

Query: 435 -GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+P      +   A     E+L   D ++   KG
Sbjct: 915 GGVPLVERMTSHEAAAARLKEILQPGDAVLF--KG 947


>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
          Length = 966

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 163/498 (32%), Positives = 247/498 (49%), Gaps = 24/498 (4%)

Query: 9   KDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL   +    ++     KI ++  DSR +  G +FVAI G   DGH FI QA+ +G
Sbjct: 2   KTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A AI+      + + +A       +L V N    L +     +      +  + +TGT+G
Sbjct: 62  ACAILTEREIEIPEGAAA------VLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +   + I + +G     IG     +   A     TTP  + L + L+Y++ +G+  
Sbjct: 116 KTTTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDF 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF----EELLPK 240
           V +E SSH LDQ+R+ GI+     FTNL +DH+DYH+T + Y  AK RLF     +   +
Sbjct: 176 VVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKE 235

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  DDA  + ++  A  A                + +       ++T++      
Sbjct: 236 GKTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAAL--RAENIRVHARGLELTLAGAFGRM 293

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    + G F VYN + A G  +A  I    +   LE    VPGRFE V        I V
Sbjct: 294 DLSLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQA-FSIIV 352

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE IL   R I +GRI+ VFGCGGDRD+ KRPIMG+IA  L+D+ +VT DNP
Sbjct: 353 DYAHTPDGLENILNTAREIAAGRILTVFGCGGDRDRTKRPIMGRIAAALSDVVLVTSDNP 412

Query: 421 RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           R+EDP +I  E+  G+          +  +R  AI  A+ +  K D++++AGKGHE   I
Sbjct: 413 RTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVRAVALAEKDDIVIIAGKGHENYQI 472

Query: 475 VTNGEKKMSVDCDIIREI 492
           + + +     D ++ RE 
Sbjct: 473 LKD-KTIHFDDKEVAREA 489



 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 162/455 (35%), Gaps = 38/455 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   +++ +D+R I AG +FVA+ G + DG  F  QA+ +GA  ++V    ++    A
Sbjct: 518 AADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKGAAGVLV----AVDTPEA 573

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +     +L   +T       A+    K    ++A+TG++GK++              ++
Sbjct: 574 KLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKDL----------TA 623

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--HRLDGI 202
             +G    +   A +       P+ L    +   +       VE    GL Q        
Sbjct: 624 AVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEA-----AVVEIGMRGLGQIAALAPLA 678

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+G  H++   + +    AK  L E  +      I+ ADDA    + ++A  
Sbjct: 679 APTVAIVTNVGEVHMELLGSIENIARAKAELVEA-VEPGGTVILNADDARVLAMREKAKA 737

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALV 317
               V     +   +    V       +  +  +      +  +   P+PG   V NAL 
Sbjct: 738 GVRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALA 797

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A      +G+  A V   L        RF      +    +   Y  +  S    LK + 
Sbjct: 798 AIAAARVLGLSLADVRRGLAVPPAQKMRFAVEKCGAY-TFVNDAYNASPVSTRASLKTLA 856

Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            + +GR I V G     G   +     +G+ A  L   A++     R E+   I      
Sbjct: 857 EMFAGRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVL----SRGEESRFIAEAAKA 912

Query: 435 -GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+P      +   A     E+L   D ++   KG
Sbjct: 913 GGVPLVERMTSHEAAAARLKEILQPGDAVLF--KG 945


>gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 494

 Score =  327 bits (837), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 150/501 (29%), Positives = 247/501 (49%), Gaps = 29/501 (5%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+ + D  E+  +            I  +  DSR +    +F+ I G + DGH F
Sbjct: 1   MKLMDLLEEIDTIEIKGEER--------INIENIYYDSRKVTPNSLFICIEGFQTDGHHF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I QAI +GA AIV     +  D           + V +TR+ ++   S  YG+  +++  
Sbjct: 53  IDQAIKKGAIAIVAQKDMTGLD-------GVTWVQVKDTRQVMAQLGSTFYGRPSQHLEL 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S    +++I +        IG  +    +   + + TTP  I L +    
Sbjct: 106 IGVTGTNGKTSTTYMIKKILENHERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQIFKE 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ + VT   +E SSH L   R+   +   G FTNL  +H+D+H+    Y  AK +LF  
Sbjct: 166 MADEKVTECVMEVSSHALALERVAESEFKVGVFTNLTPEHLDFHENIDNYREAKKKLFYL 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
                       DD +   + +        +++ G + +  +  K +          +  
Sbjct: 226 TTVANVI---NIDDPHGAMIAEEVKKLKPSLITFGIKKQATVMAKNIATTLKDVTFDLVT 282

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      +PG F  YNAL +    IAIG+   ++++ ++ +  VPGRFE V    + 
Sbjct: 283 PVGEARVTVKIPGIFSAYNALASIATSIAIGVPFDVIVQGIQSIPGVPGRFESV-LGIKD 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT +++E +++  + +T  R+I VFGCGGDRD+ KR +MG+I+  L+D++++
Sbjct: 342 FSVIVDYAHTPDAIENVIQAAKNVTEHRVITVFGCGGDRDRTKRSVMGEISGSLSDLSVI 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+EDP KI   I  GI      +    +R EAIR A++   K D++++AGKGHE 
Sbjct: 402 TSDNPRTEDPYKILMMIEAGIKKTKGLYTIIEDRREAIRYAMKEAKKGDIVLIAGKGHEA 461

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
              + +       DC + REI
Sbjct: 462 TQQIGSNVII-FDDCGVAREI 481


>gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 486

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 168/502 (33%), Positives = 257/502 (51%), Gaps = 24/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ ++     E I           + ++N+++ DSR      +FV + G   DGH +I
Sbjct: 1   MNLKSILKGIDYESI-------QGDIDIEVNKINYDSRKAGNDDVFVCVKGYATDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA+ IV+     ++D       N  I+  ++TRK L+L  +  Y      I  +
Sbjct: 54  EKAIENGAKVIVIQDDIEIKD------ENITIIKCNDTRKALALMGANYYDNPSSKIKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A  ++ I + S      IG   + I         TTP  + L +  S +
Sbjct: 108 GVTGTNGKTTTAFMIKHILEESNKKVGLIGTIANFIGDEKIHTERTTPESLELQELFSEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +  +E SSH L   R+ GI+   G FTNL RDH+D+H+T + Y+ AK +LFE  
Sbjct: 168 VDKGVEYCVMEVSSHSLALDRVYGIEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLFERS 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K        DD Y ++V+   +N  C  +           K        +++   +  
Sbjct: 228 RIKIVNV----DDNYGRQVISDLNNLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNL 283

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K+   F+  +PGE+ +YNAL A   C  +G+    +   +E + V+          + G 
Sbjct: 284 KEDEQFVLNIPGEYNIYNALGAIAACFKLGMPIKDIKSGIENVVVLGRCERVAKEYNLGY 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAHT + LE ILK  +  T GR+I VFGCGGDRD+ KRP MGKI+ D+ADI IVT
Sbjct: 344 EIIIDYAHTPDGLENILKTAKAFTKGRLISVFGCGGDRDKVKRPEMGKISTDIADITIVT 403

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPRSE+P  I  +I  GI    +    NR EAI+ +I++    DV+V+AGKGHET  +
Sbjct: 404 SDNPRSEEPLSIIKDIEAGIDKDNYFVIENRKEAIKKSIDIALDNDVIVIAGKGHETYQV 463

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           + + E     + +I++EIL  +
Sbjct: 464 LKD-ETIHFDEREIVKEILDNM 484


>gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 502

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 186/509 (36%), Positives = 267/509 (52%), Gaps = 25/509 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+          L+  P Q    KI  +S +SR I+ G +F A+ G+  DG ++I
Sbjct: 1   MHLSDLLKN--------LADIPDQAASIKIGGMSENSRAIKPGDMFAAVAGSSTDGRIYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA  I+          +     +TPI++V+N R  L+  A+R + K P  I AV
Sbjct: 53  KAAIDAGARVILTD---MRPLEAPLDDLDTPIIMVENPRLVLAKAAARFWHKQPGMIAAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN--------RLTTPSPIYLAK 172
           TGT+GK+S   F++Q+  R    +  IG      +  +          +LTTP  + L  
Sbjct: 110 TGTNGKTSTTDFLRQLWTRVTWQASSIGTLGVKGTDTRKMDGKILDLPKLTTPDSVSLHS 169

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           ALS L   GVTH+++EASSHGL Q RLDG+ +   +FTNL +DH+D+H   ++YF AK  
Sbjct: 170 ALSPLCDAGVTHLALEASSHGLVQQRLDGLNIHIAAFTNLTQDHLDHHNDMESYFIAKSH 229

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHN 287
           LF +LL     AII  DD Y + +       G                   ++K+  I N
Sbjct: 230 LFMDLLMHAGAAIINIDDPYGRRLCDMLTAQGDARQIVIQTFGFADDADFQIEKITPIDN 289

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +++  +GK +     + G FQ  NAL A  +    G+     L  L  L   PGR +
Sbjct: 290 ILDMSVKHDGKSWHIPLAMSGTFQAVNALTAGIMAYMSGLPLQDSLGGLAYLKPAPGRMQ 349

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V  + +G +I VD+AHT ++L   L+ +R   S ++ V+FGCGGDRD  KR +MG IA 
Sbjct: 350 TVTGHPQGAQIVVDFAHTPDALRAALEALRPEVSHKLYVLFGCGGDRDPSKRALMGAIAD 409

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D AD+ IVTDDNPRSEDP  IR+ I+   P  IE   R  AI+TA+E L + DVL++AGK
Sbjct: 410 DAADVVIVTDDNPRSEDPASIRSAIMAASPKSIEIFPRDTAIKTALEQLVEGDVLLIAGK 469

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GHETV ++ + E     D  +   I+  +
Sbjct: 470 GHETVQLIGD-ETLPFSDISVASRIIADM 497


>gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           succinogenes 130Z]
          Length = 488

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 233/503 (46%), Gaps = 25/503 (4%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L  L+  + PEL              +  E+  DSR ++ G +FVAI G+  DG  F
Sbjct: 1   MKNLTALLGLNSPELDG-----------IRFTEMCLDSRSVKTGCLFVAIKGHNVDGRRF 49

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118
           IP AI + A A++       +        N P++   N  + LS  A + Y    + ++ 
Sbjct: 50  IPVAIERHAAAVLAECDNESEHLQVRFERNIPVISYFNLPEHLSEIADKFYDGPSQRLIL 109

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
             VTGT+GK++V+  + Q  +  G     +G          Q    TT S I +  +L+ 
Sbjct: 110 TGVTGTNGKTTVSQLLAQWARILGNIPAVMGTVGNGLLGQLQSAANTTGSAIEVQSSLAR 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              QG    ++E SSHGL Q R++ +K  A  FTNL RDH+DYH +      A  +    
Sbjct: 170 FIEQGADFAAIEVSSHGLVQKRIEALKFTAVIFTNLSRDHLDYHGSM--TAYADAKKRLF 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                   II ADD   +  ++         C       Q  ++    +    +  ++  
Sbjct: 228 TALPSKYQIINADDEVGRTWLQELPRAVAVSCNPDFQPQQKNWLKATALSFTGDGAEIKF 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    D      L G F V N L+     + +G     ++  + +L  V GR E +    
Sbjct: 288 ASSWGDGVLASRLIGAFNVSNLLLVLATLLCLGYPLQTLIRTVSQLRGVCGRMEMLK-AV 346

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT ++LE  L+  RT   G++  +FGCGG+RD GKRP+M +IA  LAD  
Sbjct: 347 HKPTVIVDYAHTPDALEKALQAARTHCRGKLWCIFGCGGERDNGKRPMMAQIAESLADRV 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           IVTDDNPR+EDPEKI A+I  G            R  AI  AI+   + DV+++AGKGHE
Sbjct: 407 IVTDDNPRTEDPEKIVADITAGFARLKNVQIIHAREAAICAAIQSAAENDVILIAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV   EK+   D +  ++ L
Sbjct: 467 DYQIVG-KEKRYFSDQETAKKYL 488


>gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
          Length = 492

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 142/511 (27%), Positives = 229/511 (44%), Gaps = 40/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +   + +I  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLIK-------ETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------MPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAK 172
            +  + +TGT+GK++ +  +++I    G  +  +G              + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHVKGL 222

Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           LF           +  A++ ADD   +   K                     K +     
Sbjct: 223 LFSRLGNDLSTTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADV--QAKNITLSPK 280

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E
Sbjct: 281 GIRFLVSSFNGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRME 340

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +   ++   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA 
Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDTKKRSIMGGIAG 399

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVL 462
             +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++
Sbjct: 400 SYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAITHAINMASSNDIV 459

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHET  I+ +       D +  R+ +
Sbjct: 460 LIAGKGHETYQILKDST-IHFDDKEKARQAI 489


>gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
 gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
          Length = 482

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 153/503 (30%), Positives = 244/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+    P       +      + +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLKELLKAIQP-------VEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIAKGATAILCE------DMPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +        I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFRYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +             ++ 
Sbjct: 227 LPKSAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLCDFKGRVLESHFEGML------LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTVSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
 gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
          Length = 491

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 149/507 (29%), Positives = 238/507 (46%), Gaps = 29/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T   Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                   +P +   +   ++ V  +   A   +     Q        +    +     +
Sbjct: 224 LGNSYHTSNPKMAVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +F     + G F VYN L A     A+ I     +  LE +  V GRFE V    
Sbjct: 284 TTPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELV-NAG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A   
Sbjct: 343 QAFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYASNP 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE
Sbjct: 403 IFTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHE 462

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
              ++ + E     D    R  +   L
Sbjct: 463 DYQLIGD-EVIDFDDRVEARIAIEKKL 488


>gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
 gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
          Length = 493

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 18/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+                +  +  +  +  DSR ++ G  FVAIVG+  DG  +I
Sbjct: 5   MNLTNLLAPWL---------DCPELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI QGA A++  S           + N  I+ ++   + LS  A RLY     +++ V
Sbjct: 56  EKAIEQGANAVIAQSCQQYPSGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++   + Q  + +G  +  +G T        Q    TT + + + K L+ L  
Sbjct: 116 TGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQ 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +A   AK ++      
Sbjct: 176 QGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEA--YAKAKMTLFTEH 233

Query: 240 KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +   AII  DD    +  +      G  +       K +    V    +   +       
Sbjct: 234 QCQHAIINLDDEVGAQWFQELQQGVGVSLFPQDASVKALWASSVAYAESGITIEFDGCFG 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL GEF   N L+A    +A+G+D   +L+    L  V GR E    N    ++
Sbjct: 294 QGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVN-SKAKV 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  LAD  ++TDD
Sbjct: 353 VVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVLTDD 412

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AGKGHE   ++
Sbjct: 413 NPRSEDPTMIVQDMLAGLTRADSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDYQVL 472

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D +  +++LG+
Sbjct: 473 KHQTVHY-SDRESAQQLLGI 491


>gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
 gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
          Length = 487

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 162/503 (32%), Positives = 252/503 (50%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+Y   P       I  +   E+++  V+ DSR I+ G +F+A+ G + DGH +I
Sbjct: 1   MKLQELLYDIKP-------IQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            +AI  GA AI+      L+D           + V++T   +   A+  YG    +++  
Sbjct: 54  AKAIELGATAIL------LEDMPQQYTEGITYIQVESTEDSVGKVATAFYGNPSHHLILV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +R G     +    + I   A     TTP PI L   LS +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRRMGHKCGLLSTVCNYIEDKAVPADHTTPDPIELNALLSEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + Q R+ G+K     FTNL RDH+DYH+T + Y NAK   F + 
Sbjct: 168 VKAGCEYAFMECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKK-AFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K++ AI  ADD     +++                    +       +   + + V G
Sbjct: 227 LSKDAFAITNADDKNGMIMVQNTKATVKTYSIRTLADFSAKI----LECHFDGMELEVNG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+ +      G+F V N L   G  + +G D   VL  L  LH V GR +    +  G  
Sbjct: 283 KEVNVQ--FIGKFNVSNLLAVYGAAVMLGKDPEDVLVALSALHSVNGRLQPFH-SPNGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M + A+  +D  I+
Sbjct: 340 AIVDYAHTPDALENVLNAIHEVLNGKGHVITVCGAGGNRDKGKRPLMAQEAVKQSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R E IRTA  +  K DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDNKQMKKVISIVDRKEGIRTACMLAQKGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQDIK-GVKHHFDDKEVLQEIF 481


>gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
 gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
          Length = 491

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 150/468 (32%), Positives = 224/468 (47%), Gaps = 14/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR +  G IFVAI G   DGH FI +A A GA+ IV                    
Sbjct: 27  VRNDSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIVHEREL------TDYLEKPTY 80

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + V ++ +  +           E   ++ VTGT+GK++ A  V+ I + +G     I   
Sbjct: 81  IRVTDSSRAYARLVREFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIFRNAGEPCGLISTV 140

Query: 151 STISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TTP    L   L+ +   G+   ++E SSH L Q R++G +     F
Sbjct: 141 EYRDGKITAPATHTTPEAGILFPLLATMRRNGMRAAAMELSSHALQQGRINGARFRTAIF 200

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL  DH+DYH   + Y+ AK   F  LL  +  A+I  DD + K +  R  +   +V  
Sbjct: 201 TNLTGDHLDYHGDMEHYYQAKKLFFTRLLGLDGTAVINIDDEFGKRLA-RDISGRQQVTF 259

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    +  V       +  ++ E + FD    L G   ++N   A    +  G+  
Sbjct: 260 GMTPAADWVISDVELGAEGSKFRLTGEEQAFDVATNLIGTHNIHNLTGAILAALDYGLKP 319

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   L +   VPGR E    +  G   YVDYAHT ++L+ +L+ +R IT G++I VFG
Sbjct: 320 EAISHALNRPIRVPGRLEPFRASPEGPVFYVDYAHTDDALKNVLEILRKITKGKLIAVFG 379

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRI 446
            GGDRD+ KRP MGK A   AD  I+T DNPRSE+P+KI  EI  GIP    F  + +R 
Sbjct: 380 AGGDRDRSKRPRMGKAAAQYADHLILTSDNPRSEEPQKIIDEIAAGIPAGTSFETEPDRA 439

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +A+R A+ +    DV+++AGKGHE    +  G ++   D  +I+ ++ 
Sbjct: 440 QALRRAVAVARPGDVVLIAGKGHENYQEIQ-GVRRSLDDRKLIKTLIS 486


>gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 493

 Score =  326 bits (835), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 164/492 (33%), Positives = 244/492 (49%), Gaps = 19/492 (3%)

Query: 11  FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              LI+ L +       +++I  V  DSR I+ G++FV I G K DGH ++  A+  GA 
Sbjct: 4   LENLISGLEVIETSGDLDKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGAGAI 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A++V                  ++ V +TRK L + AS  YG       ++ VTGT+GK+
Sbjct: 64  ALLVEK-------PVAGTQGVTVVRVKDTRKALPIVASNFYGAPSRQLRLIGVTGTNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +  + + +G     +G         Q+    TTP  + L + +  +  +G  +  
Sbjct: 117 TTTHLITSVLEEAGYQVGILGTLYARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LD  R+D +   A  FTNL +DH+DYH+T   Y  AK++LF  L  K+    +
Sbjct: 177 MEVSSHALDLGRVDCLDFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFAV 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D  S  V + A  +      +  +       +V         T+     D      L
Sbjct: 237 INRDDPSWTVFRDATPSRVVTYGITDEAAV-RATEVRVEPEGSCFTLKWPEGDLRLSLNL 295

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V NAL AA   +  GI   ++   LEK+  +PGRFE V        + VDYAHT 
Sbjct: 296 SGWFNVSNALAAAAFALKEGISPEVIKRGLEKVSGIPGRFETVKCGQ-DFTVIVDYAHTP 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           + LE ILK  R I   RII VFGCGGDRD+GKRP+MGKIA + +D +I+T DNPRSEDP 
Sbjct: 355 DGLENILKTARAIAKKRIITVFGCGGDRDRGKRPLMGKIAAECSDFSIITSDNPRSEDPL 414

Query: 427 KIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            I  +I+ G+       +    +R  AI  AI M   +D++++AGKGHET  ++ + E  
Sbjct: 415 AIIEDIVTGVKKVPNSRYTVIADRRVAIGQAINMAQAEDMVIIAGKGHETYQLLKD-EVL 473

Query: 482 MSVDCDIIREIL 493
              D ++ +E +
Sbjct: 474 PFDDREVAKEFI 485


>gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
 gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium cellulovorans 743B]
 gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
          Length = 481

 Score =  326 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 163/499 (32%), Positives = 251/499 (50%), Gaps = 28/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++LI     E++N          +  IN +  DSR + +  +FV I G   DGH F 
Sbjct: 1   MNLKELIKDLDYEVLNG-------DIDVDINGIQYDSRKVNSSDVFVCIPGFTVDGHNFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+  GA  I+            T   +  I+ V NTRK L+  ++  Y        I+
Sbjct: 54  EKAVNSGANVIICEKDI-------TAYKDVTIIKVKNTRKALAKVSAVYYNNPERRLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I +++G     IG   + I         TTP  + L K  + +
Sbjct: 107 GVTGTNGKTTSVFMLKAILEKAGFKVGLIGTIANYIGDKKLKAERTTPESLELFKLFNDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GV +  +E SSH LD  R+ GI+  +G FTNL +DH+DYH+T + YFN+K +LF   
Sbjct: 167 TEAGVDYCVMEVSSHSLDLDRVYGIEFNSGIFTNLTQDHLDYHKTLENYFNSKAKLFTVS 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  II  DD Y   +  +      ++     +   +  + +          +   G
Sbjct: 227 KSS----IINLDDDYGVALADKTQE---KLTYAIDKNADLKAENINLTSRGSTFELEYNG 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
           +   F   +PG++ + NAL   G  +  G+   ++ E L+ L  VPGR E V      G 
Sbjct: 280 EKEIFNINIPGKYNIQNALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGF 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I VDYAHT +SL  ILK  R  T GR+I VFGCGGDRD  KR IMG I  + +DIAI+T
Sbjct: 340 EIIVDYAHTPDSLLKILKTAREFTDGRLISVFGCGGDRDNSKRHIMGGIGSENSDIAIIT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPRSE+P +I  +++ GI    ++ + +R +AI+ A++     D++VVAGKGHE   +
Sbjct: 400 SDNPRSEEPSEIIKQVVSGIKKDNYLVEEDRRKAIKLAMKTAKNGDIIVVAGKGHEDYQV 459

Query: 475 VTNGEKKMSVDCDIIREIL 493
           + +       +  +I E++
Sbjct: 460 LKDKTID-FDERIVIDELI 477


>gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
          Length = 493

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 145/511 (28%), Positives = 232/511 (45%), Gaps = 40/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
            +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222

Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           LF           +  A++ ADD   +   K               G  +  K +     
Sbjct: 223 LFARLGNDLSTTDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPK 280

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E
Sbjct: 281 GIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKSIEGRME 340

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +   ++   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA 
Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAG 399

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVL 462
             +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++
Sbjct: 400 SYSDFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIV 459

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHET  I+ +       D +  R+ +
Sbjct: 460 LIAGKGHETYQILKDST-IHFDDKEKARQAI 489


>gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria monocytogenes L99]
          Length = 491

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 148/507 (29%), Positives = 238/507 (46%), Gaps = 29/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T   Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                   +P +   +   ++ V  +   A   +     Q        +    +     +
Sbjct: 224 LGNSYHTSNPKMAVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +F     + G F VYN L A     A+ I     +  LE +  V GRFE V    
Sbjct: 284 TTPVGEFTVKIKMIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELV-NAG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D +   
Sbjct: 343 QAFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNP 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE
Sbjct: 403 IFTSDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHE 462

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
              ++ + E     D    R  +   L
Sbjct: 463 DYQLIGD-EVIDFDDRVEARIAIEKKL 488


>gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 484

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 243/504 (48%), Gaps = 34/504 (6%)

Query: 1   MKLQDLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M +  LI    P E+I            ++I  V+ DSR I+A  +F+A+ G + DGH +
Sbjct: 1   MIISKLISSIKPIEIIGD--------ANKEIVGVNIDSRKIEANHLFIAVKGTQVDGHRY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  AI +GA A++        D       +   + V +T +   + A+  YG+  + +  
Sbjct: 53  IETAIEKGAVAVLCE------DLPEVKAPHVTYIQVQDTTQAAGVVATIFYGEPSKKVKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G     +    + I   A     TTP PI L   LS 
Sbjct: 107 VGVTGTNGKTTIATLLYNLFRKLGYKCGLLSTVCNYIEDEAVPADHTTPDPIALNYLLSR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  +V +E SSH + Q R+ G+    G FTNL RDH+DYH+T + Y +AK   F +
Sbjct: 167 MVEAGCDYVFMECSSHAIAQKRIAGLHFAGGIFTNLTRDHLDYHKTFENYRDAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK S AI  ADD     +++          +         + +        ++     
Sbjct: 226 SLPKTSFAITNADDKNGMYMVQNTKATVKTYSARSLADFKARIIECHFEGMYLEIDGREV 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  F   F +       N L   G  + +      +L  L  L  V GR E +  +  G 
Sbjct: 286 GVRFIGKFNVS------NLLAVYGASVMLQQQPENILLALSTLQSVSGRLEPI-YSPEGF 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  + +  G++I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TCIVDYAHTPDALENVLLAIHDVLNGKGKVITVCGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  ++  G+        +   +R EAIRTA  +  K DV++VAGKGH
Sbjct: 399 LTSDNPRFEDPQDILNDMKEGLNNAQLKKTLTIVDRKEAIRTACSLAQKGDVVLVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    + NG K    D +++ EI 
Sbjct: 459 EDYQEI-NGVKHHFNDKEVLYEIF 481


>gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 492

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 153/505 (30%), Positives = 238/505 (47%), Gaps = 28/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +LI       +   +         +I +V+ D+R ++ G +FV I+G+ +DGH   
Sbjct: 1   MKAIELIKP-----LKTTNFSKDFSENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELA 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ +GA  +V S    +           P++ V++T K +++ A+  Y    +   ++
Sbjct: 56  KEAVQKGATLVVASEPIEVA---------VPVIYVNDTMKAMAILAATFYHHPSQDLRVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   +  I       +  IG       S   + + TTP  I L K L  +
Sbjct: 107 GVTGTNGKTTVTHLLDYIFHDHKEKTGVIGTMYRRIGSKVYETKNTTPDSITLQKTLREM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV   S+E SSH L Q R+ G       FTNL +DH++YH T + Y  AK       
Sbjct: 167 QDSGVATCSMEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQL 226

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  K   AI+  DD   +   ++             Q        +   +   +  
Sbjct: 227 GNGYQQGKPKFAILNFDDPVGRSFEEKTA--ARVFSYGIDQPADFKATDLSITNRGTRFN 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ E + ++    L G+F V NAL A     A G+D   V++ +EK+  V GRFE V   
Sbjct: 285 LNFENRVYEVQLQLVGKFNVSNALAAIAGAYAAGLDLTSVIQSIEKISGVRGRFEIVK-G 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT + L  +L  +  I +G +  V GCGGDRD+ KRPIM +IA   +D 
Sbjct: 344 DHDFAVIVDYAHTPDGLLNVLNAVNEIKTGTVFCVVGCGGDRDRTKRPIMAEIAQQNSDT 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I T DNPR+EDP  I  E++ G+    +    +R EAI+ AIE  N  D++++AGKGHE
Sbjct: 404 VIFTSDNPRTEDPIAILHEVVDGLEEGTYQLIPDRREAIQAAIEQANTNDIVLIAGKGHE 463

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              I+   EK    D +  +  + L
Sbjct: 464 DYQIIGT-EKIHFDDVEEAKRAIDL 487


>gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
 gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
          Length = 496

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 162/481 (33%), Positives = 225/481 (46%), Gaps = 19/481 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++ +++ DSR +QAG +FVA+ G++ DG  FIP AI QGA  I+  +     +     +
Sbjct: 19  TELKQMTLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEIELDPK 78

Query: 88  ---------SNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQI 136
                    +   ++ V    K LS  A  LY      +    +TGT+GK++ A  + Q 
Sbjct: 79  FAKFNLDRTACCKVVSVPRLPKLLSEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQW 138

Query: 137 CQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G  S  +G          Q+   TT S I +   L+     G    ++E SSHGL 
Sbjct: 139 HNLLGGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLA 198

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R + +      FTNL RDH+DYH T + Y  AK RLF EL  K       ADD   +E
Sbjct: 199 QFRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFNELSTKAQVIN--ADDEIGRE 256

Query: 256 VMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +  NA        + G         V        +       + +    L G F V 
Sbjct: 257 WLTQLPNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVN 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A    +A+G D   +++    L  V GR E   T      + VDYAHT ++LE  L
Sbjct: 317 NLLTAFAGLLALGFDIQELVKTAPNLVGVAGRME-CITAPNKPMVIVDYAHTPDALEKAL 375

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R    G +  +FGCGGDRD GKRP+M  IA  L D  I TDDNPR+ED +KI A+I+
Sbjct: 376 QAARLHCEGELWCIFGCGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIV 435

Query: 434 HGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            G         NR EAI+TAIE     DV+++AGKGHE   I+   EK    D +  R+ 
Sbjct: 436 KGFSKPQQIIHNREEAIKTAIEQAKATDVILIAGKGHEDYQIIGT-EKLHFSDQETARKY 494

Query: 493 L 493
           L
Sbjct: 495 L 495


>gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
 gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
          Length = 489

 Score =  326 bits (834), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 155/503 (30%), Positives = 238/503 (47%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+        +    +        I  +  DSR + +G +F  + G   DGH F 
Sbjct: 1   MKLLTLLS-------HLPGFWVHHGGNPDIVALEMDSRRVASGSLFFCLKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+A+GA AIV     S+         + P+++V ++R+ +++ A   YG+    +  +
Sbjct: 54  EEAVARGAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  S ++QI +++G  +  IG         +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTSIIEQIARKTGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NA      +L
Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 +     +   D    +  K    A      +  +   +  +++          +
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVM-AEQIRMTAGGMAFRL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G F VYN L AA  C+A G     +   L  +  VPGRFE V    
Sbjct: 284 CTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV-DEG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD  KRP+M ++A+  AD+A
Sbjct: 343 QNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDPSKRPLMAQVAVRYADVA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I T DNPRSEDP++I  ++  G+       +   +R EAIR AI    + DV+++AGKGH
Sbjct: 403 IFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET  I+ N +     D  + R  
Sbjct: 463 ETYQIIGN-DVIEFDDRAVARAA 484


>gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 184/490 (37%), Positives = 266/490 (54%), Gaps = 13/490 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K    L +   + P + ++  +   + DSR +  G++F A  G K +G  FI +AIA 
Sbjct: 4   TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIA- 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                  + A ++             LV +N R   +  A+R Y   P  + AVTGT+GK
Sbjct: 62  -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SVA   +Q+   +G  +  IG      +  +    +TTP  +      S L+   ++HV
Sbjct: 115 TSVAELCRQLWTITGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EASSHGLDQ+R DG K+IAG+FT+  RDH+DYH T + Y  AK+RLF+E +  +  A+
Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I+ADD  +  V+      G +++ +G + + I L    A    Q +T+S++G+ +    P
Sbjct: 235 IWADDPAATTVIAHVQKRGLKLIDIGEKAEAIRLVNREADSQGQMITLSIKGESYKIRLP 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G +Q+ NALVAAGL +A G D    +  L  L  V GR E    +  G  +YVDYAHT
Sbjct: 295 LIGGYQLSNALVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L   ++ +R  T G + VVFG GGDRD+GKRP MGKIA +LAD  IVTDDNPR ED 
Sbjct: 355 PDGLRAAIEALRPHTEGLLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 414

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKM 482
             IR E++ G P   E G R EAI +AI+   K D++++AGKGHE   I+  GE      
Sbjct: 415 ATIRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 474

Query: 483 SVDCDIIREI 492
             D  + +E 
Sbjct: 475 FDDVTVAKEA 484


>gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL J1-023]
          Length = 491

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 155/508 (30%), Positives = 236/508 (46%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+                     ++N+++ DSR +Q G +F+ I G   DGH F 
Sbjct: 1   MKLKELMQAIPV-------YTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+  GA AI+             +  + P+L V ++++ +++ A   YG   +   ++
Sbjct: 54  DRAVQLGAVAIIAEK---------QLDVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK       
Sbjct: 165 LLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L     A++ ADD  S  +                         +    +     
Sbjct: 225 GNSYNLSNPKIAVLNADDKESVRMQTATAAHVITFGIKEPADFS--ASNIQITSHGSTFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     DF     + G F +YN L A     A+ I     +  +E +  V GRFE V   
Sbjct: 283 LKTPVGDFSLKIKMIGNFSIYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELV-NA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDY+HT +SL  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A  
Sbjct: 342 GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATN 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I T DNPRSEDP  I A++I G+PG   ++   NR +AIR AI M    DV+++AGKGH
Sbjct: 402 PIFTSDNPRSEDPHAIIADMIQGVPGSDSYVVHENRRDAIRYAINMAEAGDVILIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497
           E   ++ + E     D    R  +   L
Sbjct: 462 EDYQVIGD-EVIDFDDRVEARIAIEKKL 488


>gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
 gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
          Length = 492

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 164/478 (34%), Positives = 243/478 (50%), Gaps = 23/478 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR ++ G+IF AI G   DGH FIP+A+A+GA  IV             +    
Sbjct: 23  RGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAERKVE-------VPPGV 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            + VV NTR+ L+  A++ YG       ++ VTGT+GK++    +  + Q  G     IG
Sbjct: 76  VLEVVPNTRRALAWAAAQFYGHPSRKLHVVGVTGTNGKTTTTHLLSSLYQEQGKKVGLIG 135

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                    A     TTP  + L   L+ +  +G+    +E SSHGL   R+ G+     
Sbjct: 136 TLYVKLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEVSSHGLALERVTGVAFDVA 195

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAG 264
            FTNL +DH+D+H+  + YF  K RLF ELL   P +  A+I  DD Y + +       G
Sbjct: 196 VFTNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQRLTSLCR--G 253

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             VL+ G +   +H           ++  S  G+  +    LPG F VYNAL A  + + 
Sbjct: 254 VEVLTYGLKEGEVHALDYELRPEGTRLLASAGGERVEVKLSLPGIFNVYNALAALAVAVG 313

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+   L    L ++  VPGR E +    +   + VDYAHT + L  IL+  R I+ GR+
Sbjct: 314 EGMPLDLAARALSRVQAVPGRCERI-DEGQDFTVLVDYAHTPDGLLNILRTAREISRGRV 372

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PG 438
           IVVFGCGGDRD  KRP+MG+IA + AD+ +VT DNPRSEDP  I   I  G+        
Sbjct: 373 IVVFGCGGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAIMQAIAQGLAQVAPPSR 432

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           ++   +R  AI+ A       D++++AGKGHE   I+ + ++    D ++ R +L  +
Sbjct: 433 YLLIEDREAAIKEAFARARPGDIVILAGKGHENCQIIGD-KRIPFDDREVARRLLREM 489


>gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 463

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 154/472 (32%), Positives = 233/472 (49%), Gaps = 23/472 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +DSR ++ G +F+ I G   DGH +   A+  GA A++     SL         N P
Sbjct: 2   SLENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAERELSL---------NVP 52

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +++V +T + +++ A   YG+  +  +++ +TGT+GK++ +  +++I   +G S+  IG 
Sbjct: 53  VIIVKDTARAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGT 112

Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T  +    + + TTP  + L K  + +  + V    +E SSH LD+ R+ G       
Sbjct: 113 MYTKVAGETLETKNTTPESLTLQKTFASMVEKKVEAAVMEVSSHALDEGRVHGCDFNVAV 172

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFE-----ELLPKESPAIIYADDAYSKEVMKRAHNA 263
           FTNL +DH+DYH+T   Y  AK  LF          K   A++ ADD  S E  K     
Sbjct: 173 FTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRKSTAAQ 232

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                             +          +            L G+F VYN L A G  +
Sbjct: 233 ILTYAIDNEADL--RAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNVLAAIGAAL 290

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G++   +LE +  +  VPGRFE V        + VDYAHT +SLE  L+ ++    GR
Sbjct: 291 ASGLELEAILESISTVKGVPGRFETVDAGQ-DFSVIVDYAHTPDSLENALETVKEFAEGR 349

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIE 441
           I VV GCGGDRD+ KRP+M KIA  LA  A+ T DNPRSEDPE+I  ++  G+P   +  
Sbjct: 350 IFVVVGCGGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMAAGVPEGNYTM 409

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +R EAI  ++    K DV+++AGKGHET   +  G+     D    RE +
Sbjct: 410 IADRKEAIAYSVGAAGKGDVILIAGKGHETYQQIG-GQTFDFDDRTAAREAI 460


>gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
 gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
          Length = 494

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 234/473 (49%), Gaps = 9/473 (1%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             + ++  DSR I+ G IFVAIVG+  DG  FI +A+AQGA+A++  ++           
Sbjct: 25  IVVEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGLVEWL 84

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P++ V      LS  A R+Y      ++ VTGT+GK+++   + Q     G  S  +
Sbjct: 85  NAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQRSAVM 144

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G T        +    TT S I + + LS L+ +   + ++E SSHGL Q R+  +    
Sbjct: 145 GTTGNGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKALNFEV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL RDH+DYH T + Y  A  +       K   A+I  DD   K  +    NA   
Sbjct: 205 GVFTNLSRDHLDYHGTMEEY--ALAKKSLFTQHKCKHAVINVDDEVGKAWVSDLSNAIAV 262

Query: 267 V-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
               +    + +    V       Q++            PL G+F   N LVA    +++
Sbjct: 263 SLSPLTGYQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFSTLLSL 322

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GID  ++++   +L  V GR E         ++ VDYAHT ++LE  L  +R   SG++ 
Sbjct: 323 GIDKQILVDTASQLQPVIGRMELF-QTPNKAKVVVDYAHTPDALEKALAALRVHCSGQLW 381

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            +FGCGGDRD GKRP+M   A   AD  I++DDNPRSEDP  I  +++ G+        +
Sbjct: 382 AIFGCGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKDMLAGLSEPESAFVE 441

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +R +A++ A+E     D++++AGKGHE   ++ +       D +   ++LG+
Sbjct: 442 HDRYQAVKFALEQAGSNDIILLAGKGHEDYQVLKDETIHY-SDRESALQLLGI 493


>gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 497

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 166/508 (32%), Positives = 244/508 (48%), Gaps = 34/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+++D +          +          +I +V  DSR +  G +FVA+ G   DGH F 
Sbjct: 1   MRVKDCLV---------VGQLLQGDPAAEITDVVYDSRQVTPGALFVALPGRNVDGHDFA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P+A+ +GA A+VV    +         ++  ++  D+TR  L   A+  +      +  +
Sbjct: 52  PEAVQRGAAALVVERPVAA-------PAHVAVIRTDSTRAALGRLAAEFWRHPSRRMRVV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    V+ + +R G      G   T +    +   LTTP    L +    +
Sbjct: 105 GVTGTNGKTTTTHLVKAVLERQGHVVGLTGTVHTLMPGERRPAGLTTPEASDLQRLFHQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
           +  G T+  +EASS GLD +R+D ++   G FTNL +DH+DYH T  AY  AK +LF   
Sbjct: 165 AEAGCTYAVMEASSQGLDMNRVDDVEFDLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLL 224

Query: 236 --ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                     A++ ADD  S+    R+                +    V       ++ +
Sbjct: 225 SRPGYKPRKAAVLNADDPASEYY--RSVTEVPVYTYGFRPDAMVRAADVELSPAGTRLRL 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +      L G F VYNAL AA   +A GI   ++ + LE    VPGR + V    
Sbjct: 283 CTPQGEVPVSLRLVGRFNVYNALAAAAAGVAEGIALDVIRDALEAEEGVPGRLQPVRAGQ 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               ++VDYAH+ +SLE +L   R  T GR+IVVFGCGGDRD  KRP+MG+IA  LA   
Sbjct: 343 -PFGVFVDYAHSPDSLENVLHTARGFTRGRLIVVFGCGGDRDPTKRPVMGRIAGCLAHHT 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           IVT DNPRSEDP +I  +I  G+         +    +R EAIR A+ M    DV+V+AG
Sbjct: 402 IVTSDNPRSEDPVRIVQQIESGLVDGLLPGHTYEVVIDREEAIRRAVTMAEPDDVIVIAG 461

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHET  I  +       D  + R ++ 
Sbjct: 462 KGHETYQIFKD-RTIPFDDRAVARSLIE 488


>gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 492

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 142/509 (27%), Positives = 230/509 (45%), Gaps = 36/509 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---EDGH 57
           MKL++L      +         +     KI  +  DSR I  G +F+ + G     ED H
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEIDSRKITNGNLFICVSGINGFLEDRH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F+  A+  GA A++V    +++          P ++V + R  +++ AS  Y      +
Sbjct: 54  QFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYDYPSNKM 104

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174
             + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + L
Sbjct: 105 KLIGITGTNGKTTTSYLLEKIFSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNL 164

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + ++   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  LF
Sbjct: 165 QMMKNRNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKGLLF 224

Query: 235 EE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                     ++  A++ ADD   +   K               G  +  K +       
Sbjct: 225 ARLGNDLSTTEKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKGI 282

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +S    + +    L G F VYNAL A  + +  GI    + +    L  + GR E +
Sbjct: 283 HFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSFSNLKSIEGRMEII 342

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              ++   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   
Sbjct: 343 -DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSY 401

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D++++
Sbjct: 402 SDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLI 461

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHET  I+ +       D +  R+ +
Sbjct: 462 AGKGHETYQILKDST-IHFDDKEKARQAI 489


>gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus YJ016]
 gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016]
          Length = 515

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 246/500 (49%), Gaps = 18/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+                +  +  +  +  DSR ++ G  FVAIVG+  DG  +I
Sbjct: 27  MNLTNLLAPWL---------DCPELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI QGA A++  S           + N  I+ ++   + LS  A RLY     +++ V
Sbjct: 78  EKAIEQGANAVIAQSCQQYPPGLVRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGV 137

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++   + Q  + +G  +  +G T        Q    TT + + + K L+ L  
Sbjct: 138 TGTNGKTTITQLIAQWLELAGQKAAVMGTTGNGFLNALQPAANTTGNAVEIQKTLADLQQ 197

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG    ++E SSHGL Q R+  ++  AG FTNL RDH+DYH T +A   AK ++      
Sbjct: 198 QGAKATALEVSSHGLVQGRVKALQFAAGVFTNLSRDHLDYHGTMEA--YAKAKMTLFTEH 255

Query: 240 KESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +   AII  DD    +  +      G  +       K +    V    +   +       
Sbjct: 256 QCQHAIINLDDEVGAQWFQELQQGVGVSLFPQDASVKALWASSVAYAESGITIEFDGCFG 315

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL GEF   N L+A    +A+G+D   +L+    L  V GR E    N    ++
Sbjct: 316 QGRLHAPLIGEFNATNLLLALATLLALGVDKQALLDSAASLRPVLGRMELFQVN-SKAKV 374

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L+ +R   +G +  +FGCGGDRD+GKRP+M +IA  LAD  ++TDD
Sbjct: 375 VVDYAHTPDALEKALQALRVHCTGHLWAIFGCGGDRDKGKRPMMAEIAERLADHVVLTDD 434

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSEDP  I  +++ G+      + + +R  A++ A++     D++++AGKGHE   ++
Sbjct: 435 NPRSEDPAMIVQDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKGHEDYQVL 494

Query: 476 TNGEKKMSVDCDIIREILGL 495
            +       D +  +++LG+
Sbjct: 495 KHQTVHY-SDRESAQQLLGI 513


>gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 488

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 161/501 (32%), Positives = 256/501 (51%), Gaps = 24/501 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+  LI         ++    ++  +  I +V+  S++++ G+ F+ I G K DGH +I
Sbjct: 1   MKINKLIEGL------EMIETNIKNFDEDIKDVAYSSKNVEDGFAFICIKGFKTDGHEYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI +GA+ I+V   Y     ++ ++     +   NTRK LS+ ++  +    +N   +
Sbjct: 55  DEAIERGAKLIIVDEFYD----TSKLKDKVLFIKTSNTRKALSVISANFFEHPSKNFLLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    ++ I ++SG     IG   + I     + + TTP    L K    +
Sbjct: 111 GVTGTNGKTSTTFMIKSILEQSGHKVGLIGTVKNMIGQKEIEAKHTTPESYDLQKLFFEM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V  V +E SSH L+ HR+D      G FTNL +DH+D+H T + YF AK++     
Sbjct: 171 KKENVDSVVMEVSSHSLELHRVDCCDFDVGVFTNLTQDHLDFHGTMENYFAAKLK----- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + S   +   D      + R +                   K+    N+ ++      
Sbjct: 226 LFEMSKKRVVNVDDEWGRKIIRIYPDSVTYGINSKADVCAMSVKLYVNKNQFELRQLDND 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   +PG F VYNAL AA    A+GID   +   LE +  +PGRFE V  ++    
Sbjct: 286 NKEQVTLNIPGIFSVYNALAAASCAYALGIDLKTIKAGLESVKAIPGRFEIV-ESNDKFT 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +DYAHT + L  ++K +  +  GR +++FGCGGDRD+ KRPIMG+IA  +AD  IVT 
Sbjct: 345 IVIDYAHTPDGLLNLMKTVDEVAKGRKVLLFGCGGDRDRTKRPIMGEIAGKMADFVIVTS 404

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP KI  +I+ G+      ++   +R EAI+ AI+   + D +V+AGKGHET  
Sbjct: 405 DNPRTEDPIKIIEDILVGLQKTNAEYVVIPDRFEAIKYAIKNAKENDFIVLAGKGHETYQ 464

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+ +       + +++R IL 
Sbjct: 465 ILKD-RTIHFDEREVVRSILE 484


>gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR]
 gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR]
          Length = 495

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 234/504 (46%), Gaps = 28/504 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL+                     +I  ++ DSR +Q G+ F+ I G K DGHLF  
Sbjct: 3   RLTDLLKNI-------YGAQVQGDLTVQIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQ 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119
            A+  GA  I+     ++      +         ++TR+ L+   +  Y       NI+ 
Sbjct: 56  NAVENGATVIIAEKPVTVPSSVTVVTV-------EDTREALAYMGAAFYDYPGDKLNIIG 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++ I  ++G     IG   + I         TTP  + L   L+ + 
Sbjct: 109 VTGTNGKTTTTHLIENILVKAGKKVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEMV 168

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GV +  +E SSH L+ +R+ G +     FTN+ +DH+D+H+T   Y  AK +LF  L 
Sbjct: 169 DAGVDYAVMEVSSHALELNRVAGCEYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLG 228

Query: 239 PKESPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +          +   ++      G  +         +  +K+    +    T   
Sbjct: 229 KNSRKSRNKYGIINIDDSKGQSFLEVTHGQVITYGIQSAADVRAEKIDLRSDGVSFTAVT 288

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D    L G F VYN+L A    +   I   ++ E LE++  VPGR E V    + 
Sbjct: 289 PRGSVDLKLNLTGLFNVYNSLAAVASGLGENIALPVIKEALEEVKGVPGRMEKV-EAGQP 347

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE +L   R  T GR+I VFGCGGDRD+ KRPIMG+++  L+D  ++
Sbjct: 348 FAVLVDYAHTPDGLENVLSAAREFTKGRLITVFGCGGDRDRTKRPIMGEVSAKLSDFTVL 407

Query: 416 TDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           T DNPRSE P +I  +I  G+        +    +R EAIR A+ M    DV+V+AGKGH
Sbjct: 408 TSDNPRSESPAEILRDIEEGVKPIIGPEKYTVIEDRKEAIRHALNMARAGDVVVIAGKGH 467

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET  IV   +     D ++  EIL
Sbjct: 468 ETYQIVGT-KVLPFDDREVAMEIL 490


>gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL S4-378]
          Length = 491

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 154/508 (30%), Positives = 238/508 (46%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+                     ++N+++ DSR +Q G +F+ I G   DGH F 
Sbjct: 1   MKLKELMQAIPV-------YTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+  GA AI+             +  + P+L V ++++ +++ A   YG   +   ++
Sbjct: 54  NRAVQLGAVAIIAEK---------QLDVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK       
Sbjct: 165 LLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L     A++ ADD  S  +  +   A   +     +        +    +     
Sbjct: 225 GNSYNLSNPKIAVLNADDKESVRM--QTATAAHIITFGIKEPADFSASNIQITSHGSTFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     DF     + G F VYN L A     A+ I     +  +E +  V GRFE V   
Sbjct: 283 LKTPVGDFSLKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELV-NA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDY+HT +SL  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A  
Sbjct: 342 GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATN 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I T DNPRSEDP  I  ++  G+PG   ++   NR +AIR A+ M    DV+++AGKGH
Sbjct: 402 PIFTSDNPRSEDPHAIIEDMTQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497
           E   ++ + E     D    R  +   L
Sbjct: 462 EDYQVIGD-EVIDFDDRVEARIAIEKKL 488


>gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
 gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
          Length = 485

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 172/502 (34%), Positives = 258/502 (51%), Gaps = 33/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL        P L+  + +      + ++  +++DSR ++ G++F A+ G K +G+ F 
Sbjct: 1   MKL--------PHLLKGVPLLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ +GA A+V     S + F     +  P+L+V+N+RK L+  A+ LYG   +   IL
Sbjct: 53  EEALKKGASAVVTD---SRKWFEKLSAAGKPVLLVENSRKALATAAANLYGNPQKELKIL 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    + +   R G+ +  IG  S         +  TTPS + L K L  L
Sbjct: 110 GVTGTNGKTTTTFLLFKALNRLGVKAGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKEL 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G   V  E SSHGL QHR+ GI+     FTNL  +H+DYH   + YF AK +LF   
Sbjct: 170 KNRGCEFVVCEVSSHGLHQHRVHGIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFRL- 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 +++  DD Y   +       G + ++ G + +   ++ +        V I    
Sbjct: 229 ---SKLSVVNRDDPYGTTLSALRAVNGGKTVTYGKKSRNYTIEAIDPEG---SVLIGTPK 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L GEF  YN   A  L   +G +   + E  + + V PGR E V        
Sbjct: 283 GAVKVKHNLKGEFNGYNVTAAFSLLSELGFEPLNLKEAFKNVKV-PGRMEEVVPG----- 336

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           ++VDYAHT ++L+  L  ++   SGR+IVVFGCGGDRD+ KRP+MGKIA  LAD  IVT 
Sbjct: 337 VFVDYAHTPDALQKALNALKKACSGRLIVVFGCGGDRDRTKRPVMGKIAATLADSVIVTS 396

Query: 418 DNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSE PE+I  E++ GIP         + +R  AI  A+    + D L++AGKGHE  
Sbjct: 397 DNPRSEPPEQIAKEVVAGIPEELRGKVTVELDRKRAIELALRGKGQADYLLIAGKGHENY 456

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             V  G+K    D + +RE+ G
Sbjct: 457 QEVA-GKKLPFSDQETVRELYG 477


>gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 495

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 161/511 (31%), Positives = 243/511 (47%), Gaps = 37/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +     F  L+    I   +    +++ V  DSR I+ G +F+ I G   DGH F 
Sbjct: 1   MQLNE-----FASLLKTSQIVGDET--VEVSGVQIDSRKIKRGDLFICISGLVSDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            +A+  GA A+VV     +         N P ++V  TR  ++LFA+  YG   H   I+
Sbjct: 54  GKAVDNGAVALVVERRLDV---------NVPQILVKETRHAMALFAAHFYGYPAHDMKII 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++QI +  G  +  +G     I S       TT   + + K L+ +
Sbjct: 105 GVTGTNGKTTTTYLIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +  +E SSH LD  R+ GI   +G FTNL +DH+DYH+T   Y  AK +LF  +
Sbjct: 165 REKDTDYCVMEVSSHALDFGRVKGIPFRSGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRM 224

Query: 238 LPKES-------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                        AI+  DD  S+   +                       +       +
Sbjct: 225 GNDFVQDEKQRSYAILNVDDEASETFQRLTSAEVITYGIEKECDV--RASNIRITAEGTE 282

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T++      +    L G+F VYNAL A    +A GI    + + L ++  VPGR E V 
Sbjct: 283 FTLTTFEGTENIRMKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEVV- 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +  +   + VDYAHT + LE  L  ++    G +  VFGCGGDRD+ KRP+MGK+    +
Sbjct: 342 SEGQDYLVLVDYAHTPDGLENALSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKYS 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D   VT DNPR+EDP  I  +I+ GI         F    +R  AI+ AIE+ + +DV++
Sbjct: 402 DHLFVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFELIVDRRLAIQKAIEVASPKDVVL 461

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AGKGHET   + N  K    D  + +E + 
Sbjct: 462 IAGKGHETYQDIMN-VKHDFDDRLVAKEAIR 491


>gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria innocua Clip11262]
 gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262]
          Length = 491

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 155/508 (30%), Positives = 239/508 (47%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+                     ++N+++ DSR +Q G +F+ I G   DGH F 
Sbjct: 1   MKLKELMQAIPV-------YTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+  GA AI+             +  + P+L V ++++ +++ A   YG   +   ++
Sbjct: 54  DRAVQLGAVAIIAEK---------QLDVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK       
Sbjct: 165 LLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L     A++ ADD  S  +  +   A   +     +        +    +     
Sbjct: 225 GNSYNLSNPKIAVLNADDKESVRM--QTATAAHIITFGIKEPADFSASNIQITSHGSTFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     DF     + G F VYN L A     A+ I     +  +E +  V GRFE V   
Sbjct: 283 LKTPVGDFALKIKMIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELV-NA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDY+HT +SL  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A  
Sbjct: 342 GQDFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYATN 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I T DNPRSEDP  I  ++I G+PG   ++   NR +AIR A+ M    DV+++AGKGH
Sbjct: 402 PIFTSDNPRSEDPHAIIEDMIQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497
           E   ++ + E     D    R  +   L
Sbjct: 462 EDYQVIGD-EVIDFDDRVEARIAIEKKL 488


>gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 482

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 153/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+    P  I   +         +I  V+ DSR I  G +F+A+ G + DGH +I
Sbjct: 1   MRLSDLLQTIQPVRITGSTSM-------EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA A++        +    +++    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIDKGAVAVLCE------ELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +    +  G     +    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+E 
Sbjct: 168 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +              + 
Sbjct: 227 LPKGAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F  YN L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVRFIGKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFD-AIRSPKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +I+ EI+
Sbjct: 460 NYQEIK-GVKHHFDDKEILNEIM 481


>gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
 gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
          Length = 509

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 155/495 (31%), Positives = 233/495 (47%), Gaps = 14/495 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K    L   +          +I  +S DSR I  G +F A+ G+  DG  FI  AI++
Sbjct: 10  TAKRLQTLFENVVCERATEHNPEITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISR 69

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A+V  ++       +++ ++ P+++V N  + LSL A   Y        ++ VTGT+
Sbjct: 70  GATAVVADASDDFDF--SSVPNDIPLVLVKNLGRTLSLIAGNFYDHPSRSVRVIGVTGTN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFA--QDNRLTTPSPIYLAKALSYLSSQGV 182
           GK++    + Q+  + G  +  IG      S +  QD  LTTP  I   + L+ L + G 
Sbjct: 128 GKTTCVQLLMQLFNQLGEKAASIGTMGYGFSQSALQDFGLTTPDAIACQRVLAQLRNAGA 187

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T V++E SSH L+Q R+D +      FTN+ RDH+DYH T + Y  AK RLF     + +
Sbjct: 188 TFVAMEVSSHALEQGRVDAVNFEGAVFTNISRDHLDYHGTFEHYIAAKSRLFTFDALRFA 247

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D  +   +  A  A    L     G  +  K +          IS    + + 
Sbjct: 248 VI---NGDDSASRALSAASTAESSFLYGAESGNTVVAKDIALSPEGVAAKISSAWGEANI 304

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F + N L       A G     V E ++ L    GR + +  +     + VDY
Sbjct: 305 QSCLIGNFNILNLLAVITTACAAGYSLPAVAEQVQHLQPARGRMQRIVVDGGDVTVCVDY 364

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L  +R   +  + VVFGCGGDRD+GKR  MG+IA + AD  +VT DNPR+
Sbjct: 365 AHTPDALEKALLALRAQAANDVWVVFGCGGDRDKGKRAQMGRIAAEHADAVVVTSDNPRT 424

Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           E P  I  +++ GIP          +R  AI  AI      D +++AGKGHE   IV   
Sbjct: 425 ETPACIIDDVLSGIPASDKRVTNFEDRSAAIEFAILQAKSGDTVLIAGKGHEDYQIVGTA 484

Query: 479 EKKMSVDCDIIREIL 493
           ++    DC++  + L
Sbjct: 485 KR-HFDDCEVSSQCL 498


>gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
 gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
          Length = 482

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 240/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+    P       +        +I  V+ DSR I  G +F+A+ G + DGH +I
Sbjct: 1   MRLSDLLQTIQP-------VRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA A++        +    +++    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIDKGAVAVLCE------ELPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ +    +  G     +    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTVATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+E 
Sbjct: 168 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDE- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +              + 
Sbjct: 227 LPKGAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F  YN L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVRFIGKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFD-AIRSPKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +I+ EI+
Sbjct: 460 NYQEIK-GVKHHFDDKEILNEIM 481


>gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
          Length = 521

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 230/476 (48%), Gaps = 23/476 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+SDSR +  G +FVA+ G   DGH FI  A+ +GA +++        +  + I  
Sbjct: 36  EVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERGAGSVICE------EIPSGIED 89

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V + R  L+  A   YG   +   I+ VTGT+GK++ +  +  +    G+S   
Sbjct: 90  GVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTTSKLITSMLNARGISCGY 149

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG      +        TTP    L      +   G   V +E SSH L   R+ GI+  
Sbjct: 150 IGTNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVVMEVSSHALMLKRVHGIRFR 209

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNL  +H+D+H+T +AY +AK  LF++ L  +  A++  DD  +  +  R      
Sbjct: 210 AAVFTNLTPEHLDFHETMEAYASAKQLLFDQ-LTPDGFAVLNRDDPAAPFMAARVLPEKI 268

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTI-------SVEGKDFDFLFPLPGEFQVYNALVA 318
              S+  +                  +I                   LPG F V N L A
Sbjct: 269 YCCSLSARQDTSLACGNSFFAEITGASIASSRVALHFPETVVSIEVRLPGSFNVMNMLEA 328

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A +   +G+D   +   L  +  V GR E VG +  GG  +VDYAHT ++L  +L  +R 
Sbjct: 329 ASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCSGGMAFVDYAHTPDALFKVLSTLRD 388

Query: 379 IT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     R+IVVFGCGG+RD+ KRP MG+IA +LAD  I+T DNPR EDPE I  EI  G+
Sbjct: 389 LKDEHSRLIVVFGCGGNRDRSKRPEMGRIASELADEVIITSDNPRDEDPEAILDEIEQGM 448

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                +    +R EAI  A+ M+ K DVL+VAGKGHE    + +G K    D + +
Sbjct: 449 NRDGRYRRIIDRAEAISVAVSMIGKGDVLLVAGKGHEKYQEI-SGRKAFFSDREQL 503


>gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
 gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
          Length = 499

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 157/514 (30%), Positives = 238/514 (46%), Gaps = 36/514 (7%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L DL+     E +           + +I +V++DSR ++ G +F  + G   DGH F
Sbjct: 1   MKQLIDLLKATPIERMEG-------NSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
              A   GA AI+             + S+  I+ V +TRK +       +    + +  
Sbjct: 54  ANMAAENGAAAIIAEKKID-------VASDVTIIYVADTRKAMEDIVPYFFDYPSKKMRM 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           +A+TGT+GK++    +  I    G  +  IG     I         TTP  I L + L  
Sbjct: 107 IALTGTNGKTTTTHVISHILHHVGYKTGVIGTVHALIGDKEIPTHNTTPDVIDLQRILYQ 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + VTHV +E SSH L   R+ G +     FTNL  DH+DYH+T   Y  AK  LF+ 
Sbjct: 167 MLKENVTHVCMEVSSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKM 226

Query: 237 LLPKESP-----AIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVCAIHNKQ 289
           +  K+       A I +DD Y+  +     +                +    V       
Sbjct: 227 VSDKDQIKDGKSAWINSDDPYAAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSS 286

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              I +  K +     L G F VYN + A G  ++ G+D   +   L     V GRFE +
Sbjct: 287 SFKIQLGEKRYVIKTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELI 346

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT + LE IL   + I  GR+I  FGCGGDRD+ KRPIMG+IA + 
Sbjct: 347 -EEGQSFSVVVDYAHTPDGLEKILTTAKEIAKGRLITCFGCGGDRDKLKRPIMGRIAANY 405

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEMLNKQD 460
           +D+ ++T DNPR+EDPE+I  EI  G+           +    +R  AI+ A+ + + QD
Sbjct: 406 SDVVVITSDNPRTEDPEEIIREIAAGVQDISQHKSNLLYKTVTDRRAAIQYALSIAHNQD 465

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++++AGKGHE   I+ +       D + +R+ L 
Sbjct: 466 IVLIAGKGHEDYQILKDKTV-HFDDREEVRKALR 498


>gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
 gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
          Length = 489

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 237/503 (47%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+        +    +        I  +  DSR +  G +F  + G   DGH F 
Sbjct: 1   MKLLTLLS-------HLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+A+ A AIV     S+         + P+++V ++R+ +++ A   YG+    +  +
Sbjct: 54  EEAVARKAAAIVAERPLSV---------DVPVVLVSDSRRAMAILADAFYGRPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  S ++QI +++G  +  IG         +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NA      +L
Sbjct: 165 VDEGVEFVAMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 +     +   D    +  K    A      +  +   +  +++          +
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVM-AEQIRITAGGMAFRL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G F VYN L AA  C+A G     +   L  +  VPGRFE V    
Sbjct: 284 CTPHGSAAVETKLVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETV-DEG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   I VDYAHT +SLE  LK +R +    + VV GCGGDRD+ KRP+M ++A+  AD+A
Sbjct: 343 QNFTIIVDYAHTPDSLENALKTVRQLAKRNVYVVIGCGGDRDRSKRPLMAQVAVRYADVA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I T DNPRSEDP++I  ++  G+       +   +R EAIR AI    + DV+++AGKGH
Sbjct: 403 IFTSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET  I+ N +     D  + R  
Sbjct: 463 ETYQIIGN-DVIEFDDRAVARAA 484


>gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
 gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
          Length = 485

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 148/500 (29%), Positives = 241/500 (48%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL+              P+ +    ++ +  DSR +  G +FVA+ G   DG  +I
Sbjct: 1   MQLRDLLP-----------PLPITFPNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENIL 118
             AIA GA AI+                    + +   ++ LS  A R +        ++
Sbjct: 50  NTAIAAGARAILAE----GSSLRYEENGGAVCVFMPGVKEQLSEIAGRFFNHPSRHATLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV     Q+ ++ G ++  IG T +         + TTP  + + + LS L
Sbjct: 106 GVTGTNGKTSVTHLAAQLAEKLGYTAAVIGTTGSGLIGQLLPEKHTTPDAVTVQQRLSTL 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G   +++E SSH L Q R++ ++      TN+ RDH+DYH +   Y +AK RLFE+ 
Sbjct: 166 VAEGADFIAMEVSSHALVQRRVEALRFDTAVATNISRDHLDYHGSMAHYVDAKRRLFEDF 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                       D           + G  +   G+    I +  +    +    T++ EG
Sbjct: 226 ELNHRVI---NLDDRYLRDWLEGASNGLSISLQGHSRANIQVSDLAFAEHGTTFTLAYEG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++  F  PL G F VYN + A  + +A       + +H   L  VPGR E          
Sbjct: 283 REAQFSTPLLGRFNVYNVVSAVAIMLAQKQSLTAIAQHCRHLSPVPGRME-AFQAGSSAL 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L+ +L+ +R    G++  VFGCGGDRD+GKRP MG++A + AD  +VTD
Sbjct: 342 VVVDYAHTPDALQQVLQALRLHCKGKLWCVFGCGGDRDRGKRPQMGQVAAEFADRVVVTD 401

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E P++I A+I+ GI           R +A+   IE     DV+++AGKGHE   +
Sbjct: 402 DNPRTEAPQQIIADIMAGIADKRKVHSMEGRRQAVLDTIERAAPDDVVLLAGKGHEDYQV 461

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + +       +  I+++ + 
Sbjct: 462 IGHERIDY-NERQIVQDWIS 480


>gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 484

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 237/470 (50%), Gaps = 16/470 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR ++ G +FVA+ G+  DG  FI  A+ +GA  +V                   
Sbjct: 20  NIRIDSRKVRQGDVFVALPGSSVDGGAFIADALERGASYVVC-----RPCSVPVQTGGAA 74

Query: 92  ILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++V ++ RK L L A+  Y        ++ +TGT+GK++    +  + + +G  +  +G 
Sbjct: 75  VVVAEDPRKALGLLAAARYDTADTGFPLVGITGTNGKTTCTYLLDHLFRTAGHVTGLLGT 134

Query: 150 TSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +       +   +TTP  + L   LS +   GV    +E SSH LDQ R+ G +  A  
Sbjct: 135 VNFRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEAAFMEVSSHALDQQRVSGARFAAAL 194

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL +DH+DYH   +AYF+AK RLF EL  ++    + ADD Y + ++ +        +
Sbjct: 195 LTNLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVCAVNADDPYGRRLLPQLGRGVGYSV 254

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     L+          + +S++   K ++   PL G F   N        +A+G
Sbjct: 255 QGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWELRSPLVGAFNASNLAGVQAAGLAMG 314

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +     ++ L     VPGR E +  N +G  ++VDYAHT ++LE +L+ +R     R+I 
Sbjct: 315 LPVEA-MQGLASFSGVPGRMERI-ENDKGLNVFVDYAHTPDALENVLRALRAAGFARVIA 372

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKG 443
           VFGCGGDRD+ KRP+MG+     AD+A++T DNPR+EDP  I A++  G       +E+ 
Sbjct: 373 VFGCGGDRDRTKRPLMGQAVCRHADVAVLTSDNPRTEDPVAIMADVKPGLAQCDHVVEEP 432

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R +A+  A+EM    D ++VAGKGHE   ++    K    D + +RE+L
Sbjct: 433 DRRKALAAAVEMARPGDAVLVAGKGHEDYQVIGT-TKIHFSDQETLRELL 481


>gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei
           VT8]
 gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter aquaeolei VT8]
          Length = 494

 Score =  324 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 154/492 (31%), Positives = 243/492 (49%), Gaps = 15/492 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L+  +   P  + +  I+ + +DSR ++ G  F+A+ G +     ++ QAI+ GA A
Sbjct: 6   ISTLLQGIIEVPSVF-DVTIHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           I++ S    Q          P++     R  L   A R +        ++ VTGT+GK+S
Sbjct: 65  ILLESEQERQCHERHGALIVPVV---GLRARLGRIADRFFEHPSRHLRVIGVTGTNGKTS 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSV 187
           V  ++ Q+ + +G     +G        + ++   TTP  + + + L+ + ++G     +
Sbjct: 122 VTQYISQLLRETGTPCGLLGTLGYGMPGSIESATHTTPDVVQVNRVLNRIRNEGGRAAVM 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH LDQ R+D + +    FTNL RDH+DYH + +AY  AK RLF       S     
Sbjct: 182 EVSSHALDQGRVDNLTMTGAVFTNLTRDHLDYHGSMEAYGEAKARLFLREELHFSVINF- 240

Query: 248 ADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD + +++  +          S+      + LK+     +  +  +  +  +FD   PL
Sbjct: 241 -DDPFGRQLYGQLEGQCDRVRYSLHEAQTELWLKEFTPTASGFRARVDGQWGEFDLTVPL 299

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F   N L A    + +G+     +  + +L   PGR E   T S G  + VDYAHT 
Sbjct: 300 LGSFNASNVLAALATVLTLGVPVERAVSVVRELSPPPGRLERF-TGSTGKHVVVDYAHTP 358

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   L+ +R  T GR+I VFGCGGDRD GKRP M K A   AD  IVTDDNPR+E PE
Sbjct: 359 DALANALEALRPHTRGRLICVFGCGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPE 418

Query: 427 KIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +I ++I  G           +R +AI  A+ M N+ D++++AGKGHE    +  G+K   
Sbjct: 419 RIVSDISAGFTQAGRWQVIHDRAQAIAEALGMANEDDLVLIAGKGHEAYQEI-RGQKLPF 477

Query: 484 VDCDIIREILGL 495
            D + +R +L L
Sbjct: 478 SDAEQVRHLLNL 489


>gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
 gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
          Length = 479

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 227/501 (45%), Gaps = 34/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+             +   + +  I +VS DSR +    +F  I G + DGH F 
Sbjct: 1   MKLSELLKDIE---------YTGTYVDCDITDVSCDSRKLTPNSVFACIKGVQSDGHDFA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+A+G   I+      L +           L+V +T    +   +  YG   + +  +
Sbjct: 52  QAALAKGVPCILCERDLGLNN----------QLLVQDTHFAFAKMCANFYGNPAKKLKLV 101

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V S ++++    G     IG   + I         TTP      K LS +
Sbjct: 102 GVTGTNGKTTVTSIIKRVLAGLGCKVGLIGTIQNEIGDQVIPTTKTTPDAGEFQKILSDM 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SSH LDQ RL        +FTNL +DH+DYH+  + YF AK +     
Sbjct: 162 VEAGCEYVIIEVSSHALDQCRLADSHFEVAAFTNLTQDHLDYHKDMEDYFQAKAK----- 216

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L       +   D      +    +   R  S          + +       +  +    
Sbjct: 217 LFHMCDKGVICIDDSYGRRLALEAHCSLRTFSAEDASASCFARNIEMDITGVRFEMVTGA 276

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F  PG F V NAL AA +C+ +GI    V+  +     + GR E + T      
Sbjct: 277 VISRMQFGTPGLFSVRNALCAALVCLDLGISLDSVVGGINACGHIKGRSEIIPTGR-DFT 335

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  DYAHT + L  IL +I      GR + VFGCGGDRD+ KRPIMG++    AD+ IVT
Sbjct: 336 VLCDYAHTPDGLVNILSSINEYKGKGRAVAVFGCGGDRDRKKRPIMGEVVARNADLLIVT 395

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDP+ I  EI+ GI      F+   NR EAI  A++     D++++AGKGHE  
Sbjct: 396 SDNPRTEDPDAIIDEIVAGIEPTGTPFLRITNRREAIHYAVQHAQPGDIILLAGKGHEDY 455

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            ++   +K    + +++ E L
Sbjct: 456 QVLGT-QKVHFDEREVVAEAL 475


>gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 505

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 238/501 (47%), Gaps = 15/501 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+              P    + ++N ++ DSR + AG +F A+ G+  DG  FI
Sbjct: 8   MKLEMLLSPWLTN-----KALPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFI 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  GA AI+  +    QD    ++  T I+ + +  + LS  A R YG+  + +   
Sbjct: 63  DTAIQAGAVAIIAEADGIAQDGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALY 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  + Q     G  +  +G T     +  +    TT S I + + L+ L
Sbjct: 123 AVTGTNGKTTISQLLAQWANLIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  +   A  FTNL RDH+DYH   Q Y +AK  LF E 
Sbjct: 183 VEQGADFAAMEVSSHGLVQGRVRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTEH 242

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                           +  ++      A        + G  +   +V        +    
Sbjct: 243 DAGVPIINADDAVGAEWLHDLPHAVAVAIEPEAVANHTGLKLWATEVQFSTQGVTIAFDS 302

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F  PL G F V N L+A    +A     A +L    +L  V GR E    ++  
Sbjct: 303 SWGQGKFTAPLVGSFNVTNLLLALATLLATNHSMAELLAKASQLQAVIGRMEVF-QDTDK 361

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M ++A  LAD  I+
Sbjct: 362 AMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQIIL 421

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSEDP+ I A+++ G+          +R  A R A    + QD+++VAGKGHE  
Sbjct: 422 TDDNPRSEDPKVIVADMLAGLTSPQSATVIHDRATACRHAFTHASHQDIILVAGKGHEDY 481

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ +       D + +  +L
Sbjct: 482 QILADRTIHY-SDRETVAALL 501


>gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 492

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 148/504 (29%), Positives = 240/504 (47%), Gaps = 30/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK  +LI         +   F + + +  +I +V+ D+R ++ G +FV I+G+  +GH  
Sbjct: 1   MKAIELIKPL------KSKKFSIDFSDSLEITKVTQDTREVEPGSLFVCIIGSLHNGHEL 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
             +A+ +GA  +V S    ++          P++ V+NT K +++ A+  Y    +N  +
Sbjct: 55  AKEAVQKGAVLVVASEPLDVE---------VPVVYVNNTMKAMAILAAAFYDYPSQNLRV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V   +  I       +  IG       +   + + TTP  + L K L  
Sbjct: 106 IGVTGTNGKTTVTHLLDYIFHDHKEKTGVIGTMYRRIGAEVYETKNTTPDSLTLQKTLRE 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV   S+E SSH L Q R+ G       FTNL +DH++YH T + Y  AK      
Sbjct: 166 MQENGVQTCSMEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQ 225

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                   K   AI+  DD   +   ++             Q        +   +   + 
Sbjct: 226 LGNGYQQDKPKFAILNFDDPVGRSFEEKTA--ASVFSYGIDQSADFKATDLRITNKGTRF 283

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ E + ++    L G+F V NAL A     A G++   V++ L ++  V GRFE V  
Sbjct: 284 NLNFEDQVYEVQLQLVGKFNVSNALAAIAGAYAAGLELPSVIQSLSQISGVRGRFEIVK- 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L  +  I +G +  V GCGGDRD+ KRPIM +IA   +D
Sbjct: 343 GEYDFAVIVDYAHTPDGLLNVLNAVNEIKTGNVFCVVGCGGDRDRTKRPIMAEIAQKNSD 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPR+EDP  I  E++ G+    +    +R EAI++AI+     D++++AGKGH
Sbjct: 403 TVIFTSDNPRTEDPNAILNEVVAGLEEESYQLIPDRREAIQSAIKQAAPNDIVLIAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+   EK    D +   + +
Sbjct: 463 ENYQIIGT-EKIHFDDVEEAEKAI 485


>gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
 gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
          Length = 485

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++     + I       +     ++N +  DSR ++ G++FVA+ G + DGH +I
Sbjct: 1   MKLENMLKAVNAQQI-------IGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +AI  GA  IV             I SN   + + +T + +   A+  YG     +  +
Sbjct: 54  SKAIENGATVIVCEQ------LPVQIESNVTYVQLTDTEEAVGKLATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  + +  G  +  I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNMFRLFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+    G FTN+ RDH+DYH+T + Y  AK   F + 
Sbjct: 168 ADEGCKYVFMEVSSHSVVQKRISGLTFAGGIFTNITRDHLDYHKTFENYLKAKK-AFFDN 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ A+   DD     + +                    + +              + 
Sbjct: 227 LPKQAFALTNLDDKNGTVMTQNTQAKVAAYSLHSLCDFKGKVLEDSFDGMLL------DI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G F   N L   G    +G     +L  L  L  V GRF+    + +G  
Sbjct: 281 NNREVNVQFIGRFNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFD-AKRSPKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L+ I  +  GR  +I V G GG+RD+GKRP+M K +   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLEAIHEVLRGRGQVITVVGAGGNRDKGKRPLMAKESAQRSDKVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   I   +R EAIRTA  +   QDV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLSKDDMKKVISIVDRKEAIRTACMLAQPQDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   V  G K    D +++ EI 
Sbjct: 460 TYQDVK-GVKSHFDDKEVLDEIF 481


>gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 499

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 144/510 (28%), Positives = 231/510 (45%), Gaps = 40/510 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +   + +I  +  DSR I  G +F+ + G   DG     
Sbjct: 9   KLKELANLLLIK-------ETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDR 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG     
Sbjct: 60  HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + 
Sbjct: 111 MKLIGITGTNGKTTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRN 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  L
Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLL 230

Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F           +  A++ ADD   +   K               G  +  K +      
Sbjct: 231 FARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKG 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E 
Sbjct: 289 IRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEI 348

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   ++   + VDYAHT ++LE +L  I     G+II VFGCGGDRD  KR IMG IA  
Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFAKGKIITVFGCGGDRDAKKRSIMGGIAGS 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+++
Sbjct: 408 YSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       D +  R+ +
Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496


>gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
 gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
          Length = 495

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 149/502 (29%), Positives = 236/502 (47%), Gaps = 12/502 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   +      L   + I   Q     I  +  DSR IQ G  FVA+ G+  DG  FI
Sbjct: 1   MKITQGLPTL---LAPWMKIDDPQLNSLTIQHLQLDSRKIQPGDTFVAVAGHAVDGRQFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++  +       + +   + PI+ + +  + LS  A R Y  H   ++AV
Sbjct: 58  ADALARGANLVLAQADEQRPHGTVSDIDSKPIIYLASLDEHLSALAGRFYADHTNRVIAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++++  + Q  +  G  +  +G T     +  Q    TT + + +   L  L+ 
Sbjct: 118 TGTNGKTTISQLITQWLELMGERAAVMGTTGNGFLNQLQPALNTTGNALEVQATLRQLAE 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG  + ++E SSHGL Q R+  +  IAG F+NL RDH+DYH T Q    AK +       
Sbjct: 178 QGARYTAMEVSSHGLVQGRIKALPFIAGVFSNLSRDHLDYHGTMQE--YAKAKQSLFTEH 235

Query: 240 KESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               AI+  DD    +          G  +       + +    V        +      
Sbjct: 236 DCQQAILNVDDPVGAQWATHQWPRLVGVSLYQQPETERCLWATSVSYSEQGIHLAFDGSW 295

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L GEF   N L++    +++G     +L+   +L  V GR E   +     +
Sbjct: 296 GVGHLHVALIGEFNASNLLLSLATLLSLGFSKPALLDTAAQLTPVLGRMELF-SVPGKAK 354

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L  +R    G++ V+FGCGGDRD GKRP+M  IA   AD  I TD
Sbjct: 355 VVVDYAHTPDALEKALCALRVHCLGQLWVIFGCGGDRDTGKRPMMAAIAEQFADKIIFTD 414

Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DNPRSE    I  +++ G+       + NR +A++ A+   N  D++++AGKGHE   ++
Sbjct: 415 DNPRSESAHAIVQDMLAGLSHRQAHVEHNRYQALQYALAHANADDIILLAGKGHEDYQVL 474

Query: 476 TNGEKKMSVDCDIIREILGLIL 497
            +       D +  +++LGL +
Sbjct: 475 ADQTVHY-SDRESAQQLLGLTV 495


>gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 240/504 (47%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA AI+        D      +    + V ++   +   A+  YG        +
Sbjct: 54  PAAIQKGATAILCE------DIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVIESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFD-AIRSPKGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P++I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D ++++EI  
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFN 482


>gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
          Length = 483

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 149/500 (29%), Positives = 238/500 (47%), Gaps = 32/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+    P  I           + +I  V+ DSR I AG +F+A+ G + DGH +I
Sbjct: 3   MKLSDLLKTIQPVHITGS-------TDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA A++        D     +S    + V ++   +   A+  YG     +  +
Sbjct: 56  PAAIEKGAIAVLCE------DLPKEQKSGITYVQVKDSEDAVGKVATAFYGDPTSKMELV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 110 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 170 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +           + ++ 
Sbjct: 230 -PKSAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEG------MLLDF 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 283 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPKGFT 341

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 342 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 401

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAI+ A  +    DV++VAGKGHE
Sbjct: 402 TSDNPRFEEPQDIINDMLAGLGKDDLQKTVSITDRREAIKAACMLAQPGDVILVAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIR 490
               +  G K    D + ++
Sbjct: 462 DYQEIK-GVKHHFDDKEELK 480


>gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
 gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
          Length = 493

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 149/495 (30%), Positives = 242/495 (48%), Gaps = 9/495 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      + +    +         ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI 
Sbjct: 1   MTKAISMDTLLSTWVDCPSLSSILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++  +       +  I  + P++ +D   K LS  A  LY     +++ VTGT+G
Sbjct: 61  QGANAVIAQACEQKAHGTIEIVDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q     G  +  +G T        Q+   TT + + + K LS L+ Q   +
Sbjct: 121 KTTITQLIAQWIDLVGSKAAVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T +    A  +L      +   A
Sbjct: 181 TALEVSSHGLIQGRVKALSFAAGVFTNLSRDHLDYHGTMEE--YANAKLTLFTEHQCGHA 238

Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +I  DD       K+  +     +       + ++   +    +   +    +  +    
Sbjct: 239 VINVDDVVGAAWAKQLNNALAVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G     +L    +L  V GR E         ++ VDYA
Sbjct: 299 APLIGEFNAANLMLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELF-QADDNAKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCHGELWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +P  I  +++ G+      I + +R +A+  A+E  + QD++++AGKGHE   I+ +G  
Sbjct: 418 EPALIMKDMLAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTI 477

Query: 481 KMSVDCDIIREILGL 495
               D +    +LGL
Sbjct: 478 HY-SDRESAMTLLGL 491


>gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
 gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
          Length = 484

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   +   I+
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG   + I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K     G +     +   +       ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353
           +E    +F   +PGE+ +YN+L        + I    + E L  + + PGR E V    +
Sbjct: 283 LE-GIEEFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+       F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + E     + +++ +IL 
Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482


>gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 490

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 147/504 (29%), Positives = 244/504 (48%), Gaps = 30/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+        +      +  +   I  +  DSR ++ G +F+ I G   DGH F 
Sbjct: 4   MDLRELLT-------HLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFA 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ +GA AI+      ++     +          +T++ +++ A   Y +  + +  +
Sbjct: 57  QMAVEKGAVAILAEKPVDVEVPVVRV---------KSTKRAMAVLADAFYNQPTQKMHLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++   ++ I +     +  IG     I   + D + TTP  + L K    +
Sbjct: 108 GVTGTNGKTTITHLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             + V    +E SSH LD  R+ G       F+NL +DH+DYH T + Y  AK       
Sbjct: 168 VEENVEVAMMEVSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQL 227

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +   A++ ADDA ++E +K              +   I    +   ++     
Sbjct: 228 GNAYNHNRPKFAVLNADDAATEEYIKNTAATVITYGI--DRESDIRATNIQITNSGTTFD 285

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++   +       L G+F VYN L A   C+  GI  ++++E ++ L  V GRFE V   
Sbjct: 286 LTTPTETVRVGMKLIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGRFEVV-DA 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK ++      I V+ GCGGDRD+ KRPIM +IA + +  
Sbjct: 345 EQDFTVIVDYAHTPDSLENVLKTVKEFAKRNIYVIVGCGGDRDRTKRPIMARIAAEYSTQ 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI+T DNPRSEDP  I  ++  G+    ++   +R EAIR A+E ++  DV+V+AGKGHE
Sbjct: 405 AILTSDNPRSEDPLAILKDMEEGLDTDNYVTIADRAEAIRYAVETVHADDVIVIAGKGHE 464

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T  I+   +     D ++ R+++ 
Sbjct: 465 TYQIIG-KKVFDFDDREVARKMIE 487


>gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
 gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
          Length = 497

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 158/499 (31%), Positives = 250/499 (50%), Gaps = 16/499 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +L+ K      + + I   +    ++  +S++S   +   IF+ + G + DG  F  
Sbjct: 3   KLYELLKKVP----SIIEIPTHKALNEEVKGISTNSHSCKQEEIFIGMPGTRVDGGEFWQ 58

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AI  GA A+V+S   +++     +     +++V++     S  A+  Y    E   ++ 
Sbjct: 59  SAIKAGAVAVVISPQAAIKFPINDLH---CVIIVEDVILTASEIATAFYSYPSEDIKMIG 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++        ++  IG   S  + F Q +  TTP    L   LS   
Sbjct: 116 VTGTNGKTTTTHLIEYFLTECKKNTALIGTLYSRWNGFKQTSIHTTPFSPELQAQLSQAV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                +  +E SSH L Q R+ G       FTNL +DH+D+H+  + YF AK  LF    
Sbjct: 176 IDKNEYCVIEVSSHALVQGRVKGCGFNVSIFTNLTQDHLDFHKNLENYFLAKQLLFSPE- 234

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A++  DD+Y + +++          S+       H   +   H++ +  +   G 
Sbjct: 235 YLQGKAVVNIDDSYGERLIQYLGPQKVYSYSIENTMADFHTTNLNYKHDRIEGILKTPGG 294

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGR 357
           +F+F  PL G+F + N L A      + ID   V+  L +   VPGR E    +  +   
Sbjct: 295 NFEFQSPLVGKFNLSNLLAAIATLFHLNIDLETVINKLPQFPGVPGRVEKIEVSEVQDIS 354

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R   SG++I VFGCGGDRD+ KR IMGKI   LADI+++T 
Sbjct: 355 VIVDYAHTPDSLENLLKATRPFISGKVICVFGCGGDRDRSKRSIMGKICAKLADISVLTS 414

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E+PE+I ++I+ G+P    F    NR EAI+TAI   +  D +++ GKGHE   I
Sbjct: 415 DNPRTEEPEQILSDILEGVPKNANFWVISNRTEAIKTAILKADPGDGVLIVGKGHENYQI 474

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +   EK    D +  +E L
Sbjct: 475 LGT-EKIYFDDREQAKESL 492


>gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
 gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
          Length = 482

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 240/504 (47%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA AI+        D      +    + V ++   +   A+  YG        +
Sbjct: 54  PAAIQKGATAILCE------DIPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSQFELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVIESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFD-AIRSPKGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P++I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQEIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D ++++EI  
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIFN 482


>gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 484

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   +   I+
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG   + I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ G++   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K     G +     +   +       ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353
           +E    +F   +PGE+ +YN+L        + I    + E L  + + PGR E V    +
Sbjct: 283 LE-GIEEFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+       FI + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + E     + +++ +IL 
Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482


>gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 503

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 176/489 (35%), Positives = 260/489 (53%), Gaps = 8/489 (1%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I K   EL         +   R+++ ++ DSR ++ G +F A+ G +  G  F+ +A+  
Sbjct: 6   ITKSLAEL-GLHGATGARGSARRVSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKA 64

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA AIV   A +       I     ++V+ + R  ++  A+  +G  P  + AVTGT+GK
Sbjct: 65  GATAIVTDPAGAAIIGDTLIGQEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +SV SF++QI Q +G  +  IG T     +    + TTP  + L + LS  +  GVTH +
Sbjct: 125 TSVTSFLRQIWQYAGHKAINIGTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAA 184

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASSHG++Q RL+G+ L    FTN  +DH+DYH+T  AYFNAK  LF  LLP++  A+I
Sbjct: 185 MEASSHGIEQRRLEGVMLSVAGFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVI 244

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD    ++ + A + G  +L VG   G  + L         Q +     G+ +     
Sbjct: 245 NIDDPKGADIARVAEDRGQEILGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLD 304

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G FQ  N L+AAGL IA G D A V      L  V GR +       G  ++VD+AHT
Sbjct: 305 LIGGFQAENVLLAAGLAIASGDDPAHVFAAFPHLTTVRGRMQLAARRGNGASVFVDFAHT 364

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++E +L+ IR    GR++ + G GGDRD+ KRP+MG  A   AD+ IVTDDNPR+ED 
Sbjct: 365 PDAIETVLQAIRPHVMGRVVAIVGAGGDRDRTKRPLMGAAAARFADMVIVTDDNPRTEDA 424

Query: 426 EKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             IR  ++ G          E G+R EAI   ++ML   D L++ GKGHE+  IV + + 
Sbjct: 425 ATIRDAVMAGAVAEGGCDVREVGDRAEAILRGVDMLEAGDALIICGKGHESGQIVGH-DV 483

Query: 481 KMSVDCDII 489
               D +  
Sbjct: 484 LPFDDVEQA 492


>gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
          Length = 498

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 164/505 (32%), Positives = 253/505 (50%), Gaps = 28/505 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  EL+N  S   +    ++ I ++++DSR ++ G +F+ + G   DGH ++ +A+ +G
Sbjct: 2   KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A AI+     S+ +          ++ V NTR  +   A   +    +   ++AVTGT+G
Sbjct: 62  AVAIIAEKKISVPE-------GVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    +  I +++G  +  IG     I     +   TTP  I L + L  +    VTH
Sbjct: 115 KTTTTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDVIDLQRLLYKMKKAKVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLP 239
           V +E SSH L   R++G +     F+NL  DH+D+H+T   Y NAK +LF        + 
Sbjct: 175 VCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEG 297
               A I  DD YS  ++    +     L      +   LK +         +     + 
Sbjct: 235 SNKNACINIDDDYSHIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGKNTKFICVYKN 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K++     L G F VYN + A    I+ GID   +++ L     VPGRFE +    +   
Sbjct: 295 KEYPVTVKLMGRFNVYNIMAAMSAAISEGIDFNFIIKALTDFTNVPGRFELI-DEGQEFS 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL   R IT+G+IIVVFGCGGDRD  KRPIMG+IA   +DIAIVT 
Sbjct: 354 VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRPIMGRIAAKYSDIAIVTS 413

Query: 418 DNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DNPR+EDP  I  +++ G+          +    +R  AI+ AIE+    D++++AGKGH
Sbjct: 414 DNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIVIIAGKGH 473

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   I+ N +     D +  R +L 
Sbjct: 474 EDYQILKN-KTIHFDDREEARRVLR 497


>gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 484

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 170/503 (33%), Positives = 269/503 (53%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   +   I+
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG   + I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ G++   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K     G +     +   +       ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353
           +E  + +F   +PGE+ +YN+L        + I    + E L  + + PGR E V    +
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+       F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + E     + +++ +IL 
Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482


>gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
 gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
          Length = 478

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 144/493 (29%), Positives = 232/493 (47%), Gaps = 26/493 (5%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +++     +++ +    P        + +  DSR ++ G IFVA+ G   DGH FI  A+
Sbjct: 3   EILNGIDYKILKKFETGP-------FSGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAV 55

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A++ S    +         +   +VV N R+ L + AS  Y    + +  V  T 
Sbjct: 56  ENGASAVIGSKEIEVNH-------DITYIVVKNLRQKLGVIASNFYKWPQKKLEIVGITG 108

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
                 +              +IG       +       TTP  + L K       +G+ 
Sbjct: 109 TNGKTTTTYLLEQILGEDKVSRIGTVEYKVGNEIIPAPNTTPESLDLIKICRKSVDRGIK 168

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ +E SSH L+  R++ I     +FTNL  +H+DYH+  + YF+AK +LF +   KE+ 
Sbjct: 169 YLIMEVSSHALEMGRVEMIDFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKENT 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                    + +   +        +S G +   ++   +      Q++ +S +       
Sbjct: 229 VF------NTDDFYGKRLFDEFGGISYGIESGDLNASMISHSLKTQEIELSFKEFQKKIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+F VYN L A G+ I +G+    + + LEKL   PGRFE      +   + VDYA
Sbjct: 283 IKLQGKFNVYNLLTAVGVAIRLGLSLEEITDRLEKLESAPGRFE-CIEAGQNFMVVVDYA 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT+++LE IL  +  I   +II VFGCGGDRD  KR  M + A  L+DI IVT DNPR+E
Sbjct: 342 HTADALENILSALNEIKIEKIITVFGCGGDRDLSKRKPMAETAEKLSDIVIVTSDNPRTE 401

Query: 424 DPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP KI  E+  G   +   + + +R +AI  A+ M  K D++++AGKGHE   I+   +K
Sbjct: 402 DPVKILDEVSKGLSSLKDSLLEIDREKAIEKAVGMAKKNDIVLIAGKGHEDYQIIG-KDK 460

Query: 481 KMSVDCDIIREIL 493
               D ++  + +
Sbjct: 461 IHFDDKEVALKYI 473


>gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus
           propionicus DSM 2032]
          Length = 1011

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 164/502 (32%), Positives = 253/502 (50%), Gaps = 43/502 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + +  ++SDSR +  G +FVA+ G K DG  +IP+AI +G  A        +        
Sbjct: 26  QPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPEAIGKGCLA------VVVDVDEGVDE 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            N P+L+VD+    L   A+   G     +  +A+TGT+GK++ +  ++++   SG    
Sbjct: 80  WNVPVLLVDDCPAALGELAAAWNGYPASQMQLVAITGTNGKTTCSWLIEEMLVASGFRPG 139

Query: 146 QIGPTSTISS------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            IG  +            QD  LTTP P+ L   L  ++  GVTHV +E SSH L Q RL
Sbjct: 140 VIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMADNGVTHVIMEVSSHALQQQRL 199

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI----IYADDAYSKE 255
              +     FTNL RDH+DYHQ+ + YF AK +LF + L ++  A+      A+      
Sbjct: 200 GSTRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHKHLKEQGVAVVVLGPQAEGCDWGG 259

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++  +  A   +    +    +   ++       +  + + G + +F  PL GE+ V N 
Sbjct: 260 LLTASLPAEQVIRCGLHGSCEVSAHQLTQTMEGFRCCLHLRGAEVNFASPLTGEYNVLNV 319

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEM 371
           L AAG+ + +G+     LE L ++  VPGR E V         G  ++VDYAHT ++L+ 
Sbjct: 320 LAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERVRLPGEQIGSGPAVFVDYAHTPDALDN 379

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+N++ +T+GR++ VFGCGGDRD+GKRP+MG++A  LAD  +VT DNPR+E PE I  E
Sbjct: 380 VLRNLKKLTTGRLLCVFGCGGDRDRGKRPLMGRVAAQLADAVVVTSDNPRTEAPEAIIDE 439

Query: 432 IIHG--------------------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+ G                    + G+    +R  AI  A  +    D +++AGKGHET
Sbjct: 440 IVAGVEAGGKSRTDAWALLNAAQPVDGYTVIADRRCAITAACSLAAPGDSVLLAGKGHET 499

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   EK    D       L
Sbjct: 500 YQIIGT-EKHFFDDRQEATNGL 520



 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 94/506 (18%), Positives = 161/506 (31%), Gaps = 49/506 (9%)

Query: 6    LIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
            L++ +   L+   S         ++   V +DSR ++ G IFVA+ G   DGH +I  A 
Sbjct: 520  LLHWNERHLLAATSGKVAGGTLCRVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAA 579

Query: 65   AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
             Q A AIV             +R     + V ++ + L   A+           + A+TG
Sbjct: 580  EQRAGAIVAE------WMPPRMRPEVLYIEVKDSLRALGDLAAYRRRLLNGTIKVAAITG 633

Query: 123  TSGKSSVASFVQQIC--QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            +SGK++V   V  I      G  +       T  +F     L    P+ L    +     
Sbjct: 634  SSGKTTVKEMVASIFAEALQGSRTGMDAVLKTRGNFNNLVGL----PLSLLPLEAGHR-- 687

Query: 181  GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             +  V +  +  G +  RL  I        N             A   A        +  
Sbjct: 688  -LAVVEMGMNVPG-EIARLVAIADPDIGCINNVHPAHLQGLGSLAGVAAAKGELFAGMRP 745

Query: 241  ESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            E+  ++  DD + +   K+                +  +    +         + T+ +E
Sbjct: 746  EAVRVVNLDDPHVRAQAKKFAGEQIGFAVTPSGRKFGPQVRATRPDNLGEQGMRFTLHIE 805

Query: 297  GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            G       P+ G   V N + AA +  A GI   ++ + L++      +   V     G 
Sbjct: 806  GWRARVTVPVFGAHNVSNCVAAAAIAHAAGIGPEVIAQGLQRYAPSVDKRLAVTELPGGL 865

Query: 357  RIYVD-YAHTSNSLEMILKNIRTITSG--RIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
            ++  D Y     S+   L+ +        R +   G     G   +     +G +   L 
Sbjct: 866  KVVNDAYNANPASMAAGLRTVAAFGHRGCRHLAALGDMLELGAASEDLHAGIGALVASLG 925

Query: 411  -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEA--IR--TAIEMLNKQDVLVV 464
             D   +T             A +           N R  A  I    A   L   D L++
Sbjct: 926  YDFLALTGMQATVMARAASAAGMKE--ENIRVFANPRAMADWIYPMLARGDLAAGDWLLI 983

Query: 465  AGKG----------HETVHIVTNGEK 480
              KG           E    + N +K
Sbjct: 984  --KGSRGMRMEQLLDELEQRLNNSKK 1007


>gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
 gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
          Length = 484

 Score =  323 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 269/503 (53%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   +   I+
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG   + I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K     G +     +   +       ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353
           +E  + +F   +PGE+ +YN+L        + I    + E L  + + PGR E V    +
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+       F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + E     + +++ +IL 
Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482


>gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
          Length = 512

 Score =  323 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 241/495 (48%), Gaps = 25/495 (5%)

Query: 9   KDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L + L     +  R+  I  +  DSR +Q G +FV I G   DGH FIPQA+A G
Sbjct: 15  KTIGQLADLLTDAVVIGNRDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAAG 74

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A AIV +           +     +L V   +  L       +      +  + +TGT+G
Sbjct: 75  ASAIVTTRE------DVEVPEGIAVLRVKELQPALDTIVPYFHDYPARKMRVVGITGTNG 128

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +   + I +++G     IG    +          TTP  + L   L+ +  +G+ +
Sbjct: 129 KTTTSYITRAILRKAGYKVGLIGTIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDY 188

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
           V +E SSH LDQ+R+ GI+     FTNL +DH+DYH+T + Y  AK +LF+ +       
Sbjct: 189 VVMEVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQ 248

Query: 244 ---AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKD 299
              A++  DDA    ++  A                     +    N  +  +  E   +
Sbjct: 249 GKTAVVNIDDAVGATMLAHAKCKHLTYAIEKEADL--RATDILVHANGAEFVLHHESFGE 306

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G F VYN + A G  +A  ID+A++ E LE    VPGRFE V        I 
Sbjct: 307 MPLKLHITGIFNVYNVMSAVGAALAEHIDAAVIKETLEAFTAVPGRFELVKAGQ-DFSII 365

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + +E +LK  R I   RII VFGCGGDRD+ KRPIMG++A +LAD+ I T DN
Sbjct: 366 VDYAHTPDGVENVLKTARKIAKKRIIAVFGCGGDRDRTKRPIMGRLAAELADVVIATSDN 425

Query: 420 PRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR+EDPE I +++  G+   I         +R  AI  AIEM  K D++V+ GKGHE   
Sbjct: 426 PRTEDPEFILSQVEEGVDEAIGTKHHELIVDRRHAIYRAIEMAEKDDIVVILGKGHENYQ 485

Query: 474 IVTNGEKKMSVDCDI 488
           I+ + +     D + 
Sbjct: 486 ILKD-KTIHFDDKEE 499


>gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
 gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
          Length = 505

 Score =  323 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 237/501 (47%), Gaps = 15/501 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          +   P++  E +I+ ++ DSR + AG +F A+ G+  DG  FI
Sbjct: 8   MKLGALLSPWLA-----IDKLPLELTESQIDAITLDSREVTAGSLFTAVNGHTVDGRRFI 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  GA AI+  +     +    ++    I+ + +    LS  A R +    + +   
Sbjct: 63  DTAIKAGASAIIAEADGIANEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALY 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  + Q     G  +  +G T        +    TT S I + + L+ L
Sbjct: 123 AVTGTNGKTTISQLLAQWANLVGYKAGVMGTTGNGLLVDLKPAANTTGSAIEIQQTLAQL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  +   A  FTNL RDH+DYH   Q Y +AK  LF E 
Sbjct: 183 VEQGADFAAMEVSSHGLVQGRIRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTEH 242

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +          ++  ++      A      V + G  +    V        +    
Sbjct: 243 QSGIAIINADDAVGASWLIDIPNAVAVAIDPQAVVNHTGLKLWATDVQFSTQGVTIEFDS 302

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F  PL G F   N L+A    +A     A +LE   KL  V GR E    ++  
Sbjct: 303 SWGQGKFTAPLVGSFNATNLLLALATLLATNHPMADLLEKAPKLQAVIGRMEVF-QDTDK 361

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M ++A  LAD  I+
Sbjct: 362 AMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDSGKRPMMAEVAERLADQIIL 421

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSEDP+ I  +++ G+      I   +R  A R A+   + QD+++VAGKGHE  
Sbjct: 422 TDDNPRSEDPKDIVDDMLAGLISPESAIIIHDRETACRHALTHASYQDIILVAGKGHEDY 481

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+ +       D + +  +L
Sbjct: 482 QILADRTIHY-SDRETVAALL 501


>gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 484

 Score =  323 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 170/503 (33%), Positives = 269/503 (53%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   +   I+
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG   + I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ G++   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K     G +     +   +       ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGLKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353
           +E  + +F   +PGE+ +YN+L        + I    + E L  + + PGR E V    +
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+       F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + E     + +++ +IL 
Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482


>gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
 gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
          Length = 484

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 173/503 (34%), Positives = 269/503 (53%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   +   I+
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG   + I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K     G +     +   +       ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353
           +E  + DF   +PGE+ VYN+L        + I    + E L  + + PGR E V    +
Sbjct: 283 LEEVE-DFSINIPGEYNVYNSLGCIICAYNLNIPMNKIKEGLSDVVI-PGRCELVAKEKN 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTRNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+       F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + E     + +++ +IL 
Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482


>gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
 gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
          Length = 482

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 243/504 (48%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+    P  I           + +I  V+ DSR I+AG +F+A+ G + DGH +I
Sbjct: 1   MKLSDLLKAIQPVQITGS-------TDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA AI+        ++   +++    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIEKGAVAILCE------EWPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYDTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+E+
Sbjct: 168 ADSGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                   +   D  +  VM +   +     S+     F        +       + ++ 
Sbjct: 228 PKSAF--SLTNLDDRNGLVMTQNTRSKVYTYSLRSLSDFKG-----KVLESHFEGMLLDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-AIRSPKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     I   I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TADNPRFEEPQDIINDMLAGLDKDDIQKTISIADRREAIKTACMLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + ++ I+ 
Sbjct: 460 NYQEIK-GVKHHFDDKEELKAIMN 482


>gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. PCC 7002]
 gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp.
           PCC 7002]
          Length = 499

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 247/501 (49%), Gaps = 17/501 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+ +     I  L+  PM   ++ +  ++S+S+ +  G +F+ + G + DG  F 
Sbjct: 2   MQLGALLKQVSA--IESLADHPM--LQQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFW 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
             AI  GA A VVS     +  +        ++ V +     +  A+  Y K      ++
Sbjct: 58  QGAIEAGAIAAVVSPEALEKFPAT---KGECVIPVADPVIACAEIANLFYEKPTASLKLV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ +  ++   Q +   +  IG        + +    TTP  I L K  +  
Sbjct: 115 GVTGTNGKTTTSHLIEYFLQAAQQPTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G TH  +E SSH L Q+R+ G +     FTNL +DH+DYH T + YF AK  LF E 
Sbjct: 175 LEAGNTHAVMEVSSHALHQNRVKGCQFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEE 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +    D    + +           S+      +++ ++       +  +    
Sbjct: 235 YCHGRAVV--NLDNPYGDRLAHKLGEKAWGYSLQDAAADLYMDRLIYTATGVEGRLKTPM 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGG 356
              +F  PL G+F + N + A G  +A+G+D   ++  L +   VPGR E V     +  
Sbjct: 293 GTVEFTSPLVGQFNLENVMAAIGAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R   + ++I VFGCGGDRD+ KRP+MGKIA   +D A+VT
Sbjct: 353 SVIVDYAHTPDSLENLLKASRPFIAKKMICVFGCGGDRDRTKRPLMGKIAATQSDWAVVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I A+++ GIP    F+ + +R  AI+ AI      D +++AGKGHE   
Sbjct: 413 SDNPRTEDPKQILADVVEGIPENIQFLVEADRATAIQRAILEAQPGDGVLIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+   EK    D +  R+ LG
Sbjct: 473 ILGT-EKIHFDDREEARKALG 492


>gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
 gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
          Length = 482

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 239/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       +  +   E+ I  V+ DSR + AG +F+A+ G + DGH +I
Sbjct: 1   MKLSELLKAIQP-------VQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA A++        D       +   + V ++   +   A+  YG     +  +
Sbjct: 54  PTAIEKGAIAVLCE------DMPEETNPDVTYIQVKDSENAVGKVATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFD-SIRSPKGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDLQKTISIADRKEAIKTACMLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D + ++ I+
Sbjct: 460 NYQEIK-GVKHHFDDKEELKAIM 481


>gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
 gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
          Length = 493

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 150/495 (30%), Positives = 242/495 (48%), Gaps = 9/495 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      + +    +         ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI 
Sbjct: 1   MTKAISMDTLLSTWVDCPSLSSILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQ 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++  +       +  I  + P++ +D   K LS  A  LY     +++ VTGT+G
Sbjct: 61  QGANAVIAQACEQKAHGTIEIVDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q     G  +  +G T        Q+   TT + + + K LS L+ Q   +
Sbjct: 121 KTTITQLIAQWIDLVGSKAAVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T +    A  +L      +   A
Sbjct: 181 TALEVSSHGLIQGRVKALSFAAGVFTNLSRDHLDYHGTMEE--YANAKLTLFTEHQCGHA 238

Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +I  DD       K+  +     +       + ++   +    +   +    +  +    
Sbjct: 239 VINVDDVVGAAWAKQLNNALAVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G     +L    +L  V GR E         ++ VDYA
Sbjct: 299 APLIGEFNAANLMLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELF-QADDNAKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G +  +FGCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCQGELWAIFGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I  +++ G+      I + +R +A+  A+E  + QD++++AGKGHE   I+ +G  
Sbjct: 418 DPALIMKDMLVGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTI 477

Query: 481 KMSVDCDIIREILGL 495
               D +    +LGL
Sbjct: 478 HY-SDRESAMTLLGL 491


>gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 484

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   +   I+
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG   + I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K     G +     +   +       ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353
           +E  + +F   +PGE+ +YN+L        + I    + E L  + + PGR E V     
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKK 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+       F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + E     + +++ +IL 
Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482


>gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
 gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
          Length = 474

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 149/470 (31%), Positives = 222/470 (47%), Gaps = 12/470 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              ++SDSR   AG +F+A  G + DG  FI QAIA GA  ++        + + T+   
Sbjct: 11  FTGMTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVIWEQEGFDWNPAWTVDHQ 70

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V   R   S  A + YG       ++ VTGT+GK+S + ++ Q        +  I
Sbjct: 71  P----VTGLRGQASAIAGQFYGHPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVI 126

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G               TTP PI L   L+     G    ++E SSHGLDQ R++GI    
Sbjct: 127 GTLGNGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGRVNGIDFKV 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TNL RDH+DYH    +Y  A  +           AI+  DDA+ + ++      G  
Sbjct: 187 AVLTNLTRDHLDYHGDMASY--ADAKRKLFHFGGVQAAILNQDDAFGRALLSELKAKGKH 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           VLS G  G  +    +        + +     +      L G F   N L      +A  
Sbjct: 245 VLSYGLSGGDVCGHDLHFDAEGLHMQVHTPQGEAMVHAKLVGRFNASNLLAVLATLLASE 304

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +     +  L  +   PGR + +G   +   + VDYAH+ ++LE  L  +R      +I 
Sbjct: 305 VALEDAVRVLADIRPAPGRMQQLGGGGQPL-VVVDYAHSPDALEKALNALREQAKANLIC 363

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445
           VFGCGGDRD+GKRP+M ++A  LAD  IVT DNPR+EDP++I AE++ G+ G    + +R
Sbjct: 364 VFGCGGDRDKGKRPLMAEVASRLADKVIVTSDNPRNEDPKEIIAEVVAGLHGPAQVEPDR 423

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +AI  AI      DV+++AGKGHE    V +G +    D ++  ++LG+
Sbjct: 424 EQAITQAIRAAQAGDVVLIAGKGHEDYQEV-SGVRYPFNDAEVAAKVLGV 472


>gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus halodurans C-125]
 gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus halodurans C-125]
          Length = 486

 Score =  323 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 145/474 (30%), Positives = 230/474 (48%), Gaps = 20/474 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I+ +  DSR +  G +F  I G   DGH +  QA++ GA A+V      L       
Sbjct: 21  NPDIHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPLEL------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
             + P++VV ++R+ ++  A++ YG+      ++ VTGT+GK+++   +++I Q  G  +
Sbjct: 74  --SVPVVVVRDSRRAMAQVATKFYGEPTNDLQLIGVTGTNGKTTITHLIEKIMQDQGKMT 131

Query: 145 FQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I    ++ + TTP  + L +  + +   GVT   +E SSH L   R+ G  
Sbjct: 132 GLIGTMYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRGCD 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                F+NL  DH+DYH T + Y  AK  +        +   A++ ADD  S +  +   
Sbjct: 192 FDVAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADFAEMTI 251

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                             + V          ++   +  +    L G+F VYN L AA  
Sbjct: 252 AQVVTYGIENEADF--QAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYNVLAAAAA 309

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+    + + LE++  V GRFE V  +     + VDYAHT +SLE +LK +  +  
Sbjct: 310 AYVSGVPLQEIKKSLEEVKGVAGRFETVKHDQ-PFTVIVDYAHTPDSLENVLKTVGELAK 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--F 439
           G + VV GCGGDRD+ KRP+M +IA   A+ AI T DNPRSE+P  I  ++  G  G  +
Sbjct: 369 GDVRVVVGCGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSEEPMDILRDMEQGAKGDSY 428

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +   +R EAI  AIE+  + D++V+AGKGHET     +       D  + ++ +
Sbjct: 429 LMIEDRKEAIFKAIELAKEDDIIVIAGKGHETYQQFRDRTID-FDDRIVAQQAI 481


>gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
 gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
          Length = 482

 Score =  323 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 241/504 (47%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+    P       +  +   E+ I  V+ DSR + AG +F+A+ G + DGH +I
Sbjct: 1   MKLTELLKAIQP-------VQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI QGA A++        D       +   + V ++   +   A+  YG     +  +
Sbjct: 54  PTAIEQGAIAVLCE------DMPEEPNPDITYIQVKDSENAVGKVATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP P+ L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADSGCKYAFMEVSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +              + 
Sbjct: 228 -PKSAFSLTNLDDKNGLVMTQNTRSRVYTYSLRSLSDFKGKVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+    + +G  
Sbjct: 281 NNHELAVRFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFD-SIRSPKGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  + +GR  +I V G GG+RD+GKRPIM K +  L+D  I+
Sbjct: 340 AIVDYAHTPDALVNVLNAIHDVLAGRGKVITVVGAGGNRDKGKRPIMAKESARLSDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R  AI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDLEKTISITDRKYAIKTACLLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D ++++EI+ 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIMN 482


>gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
 gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
          Length = 490

 Score =  323 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 156/489 (31%), Positives = 254/489 (51%), Gaps = 17/489 (3%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N       + +E KI  +  DSR I+  ++F A+ G+  DGH FI +AI  GA+ I+V  
Sbjct: 7   NISHTVLHKGKEFKIEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMIIVEE 66

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  +      +   + V++ RK L + AS  YG +P++ + + G +G +   +    
Sbjct: 67  NIEVSKYDKY--EDISFVFVEDVRKHLGIIASNYYG-YPQDKIKIIGITGTNGKTTSSYI 123

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +      ++      + I     +   TTP  + L K ++    +GV +  +E SSH L+
Sbjct: 124 LENILEKTARIGTTGNRILDEEFETVNTTPESLELVKLINESVKRGVEYFIMEVSSHALE 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R++ +K  +  FTNL +DH+D+H+T + YFNAK ++F   L       +  DD Y K 
Sbjct: 184 IGRVNMLKFDSAIFTNLTQDHLDFHKTMENYFNAKRKIFSM-LRNSGTGTVNIDDGYGKR 242

Query: 256 VMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           +++      N   + +S+  +   ++ +     ++  ++ I    K++     L GE+ +
Sbjct: 243 IIEEKKDAENVCYKTVSIKDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANINLVGEYNL 302

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L  A   +A+GI+   ++E L+K+  VPGRFE V  N    RI VDYAHT + L  I
Sbjct: 303 YNVLGCAASALALGIEIEKIIEKLQKMPSVPGRFETVKNNK-NARIVVDYAHTDDGLTNI 361

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            K +R IT  R+I VFG GGDRD  KRP M K A + +D  I+T DNPR+E+P  I  E+
Sbjct: 362 GKTLRKITDNRVITVFGAGGDRDNKKRPKMAKAAAEFSDFIILTSDNPRTENPANILKEV 421

Query: 433 IHGI-------PGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             G+         +    +R +AI+ A+ EM  + D L++AGKGHET  I+   EK+   
Sbjct: 422 EAGLIEINFPKDKYTVIEDREQAIKYAVQEMTGEGDSLLIAGKGHETYQIIG-KEKRHFD 480

Query: 485 DCDIIREIL 493
           D +I ++ L
Sbjct: 481 DREIAKKYL 489


>gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
 gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
          Length = 498

 Score =  323 bits (826), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 253/505 (50%), Gaps = 28/505 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  EL+N  S   +    ++ I ++++DSR ++ G +F+ + G   DGH ++ +A+ +G
Sbjct: 2   KNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A AI+     S+ +          ++ V NTR  +   A   +    +   ++AVTGT+G
Sbjct: 62  AIAIIAEKKISVPE-------GVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    +  I +++G  +  IG     I     +   TTP  I L + L  +    VTH
Sbjct: 115 KTTTTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKKAKVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLP 239
           V +E SSH L   R++G +     F+NL  DH+D+H+T   Y NAK +LF        + 
Sbjct: 175 VCMEVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEG 297
               A I  DD YS  ++    +     L      +   LK +         +     + 
Sbjct: 235 PNKNACINIDDDYSHIMIDAIKDRKLCKLHTFSMNRDAELKVISTEFTGKNTKFICVYKN 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K++     L G F VYN + A    ++ GID   +++ L     VPGRFE +    +   
Sbjct: 295 KEYPVTVKLMGRFNVYNIMAAMSAALSEGIDFNFIIKALTDFTNVPGRFELI-DEGQEFS 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL   R IT+G+IIVVFGCGGDRD  KRPIMG+IA   +DIAIVT 
Sbjct: 354 VVVDYAHTPDGLENILTTAREITTGKIIVVFGCGGDRDPMKRPIMGRIAAKYSDIAIVTS 413

Query: 418 DNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DNPR+EDP  I  +++ G+          +    +R  AI+ AIE+    D++++AGKGH
Sbjct: 414 DNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIVIIAGKGH 473

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   I+ N +     D +  R +L 
Sbjct: 474 EDYQILKN-KTIHFDDREEARRVLR 497


>gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium sp. BNC1]
 gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chelativorans sp. BNC1]
          Length = 483

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 228/494 (46%), Positives = 308/494 (62%), Gaps = 17/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E  + L +      E  I+ ++SDSR + AG +F A+ G+K       
Sbjct: 1   MKL--------GEFADILPLSGSIAGETTISGLASDSRRVNAGDLFFALQGSK------- 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A  A+A    +   +           P++  D+ R  L+L ++RLYG  P  ++AV
Sbjct: 46  ADGAAYAADAAGRGAVAIIARPGTVGDVGVPVIEADDPRHVLALASARLYGAQPATMVAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +++GL++  IG T  ++    +   LTTP P+ L K L  L+ 
Sbjct: 106 TGTSGKTSVAAFTRQIWEKAGLAAASIGTTGVVAPGRDEYGELTTPDPVSLHKLLRELAD 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  +KMRLF+ LLP
Sbjct: 166 AGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLP 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S+   K A  AG ++L+VG +G F+ +K+V    ++Q+  I  EG  
Sbjct: 226 KGAPAVIFADDPWSEPTEKVALAAGLQLLTVGRRGTFLTIKRVEHERHRQRTEIEHEGMI 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +D + PL G+FQV NALVAAGL I+ G+ +   +  LE L    GR E  GT   G +IY
Sbjct: 286 YDIMLPLAGDFQVGNALVAAGLAISTGLPADKAVAALEHLKGASGRLELTGTTEDGAQIY 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L+ +R  T+GR+IVVFGCGGDRD GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 346 VDYAHKPDALENVLQAVRPFTTGRVIVVFGCGGDRDPGKRPIMGEIARRLADVVIVTDDN 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE P +IR  I+  +P   E G+R EAIRTA+ MLN  D L+VAGKGHE    +  G 
Sbjct: 406 PRSEVPAEIRRAILEAVPEATEIGDRREAIRTAVAMLNSGDTLIVAGKGHEIGQEIA-GT 464

Query: 480 KKMSVDCDIIREIL 493
           K    D + +R  L
Sbjct: 465 KLPFSDHEEVRRAL 478


>gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 2336]
 gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336]
          Length = 495

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 242/496 (48%), Gaps = 13/496 (2%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K    L +         R+ ++ E+  DSR  + G +FVAI G++ DG  FI QAI  GA
Sbjct: 2   KKLTALWDIDEQLDSVHRDIELQEMILDSRLAKTGCLFVAIKGHRVDGREFIMQAIQNGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A++  +    Q  + +   N P++      K LS  A R Y    + +  + VTGT+GK
Sbjct: 62  SAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++A  + Q  Q  G +S  +G          ++   TT S I +  +L     QG    
Sbjct: 122 TTIAQLLAQWTQILGHTSAVMGTIGNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFA 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSHGL QHR++ +   AG FTNL RDH+DYH T + Y  AK RLF EL  +     
Sbjct: 182 AIEVSSHGLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKILN 241

Query: 246 IYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  +   +  +     +       CR         ++    +        +  +    + 
Sbjct: 242 VDDEIGATWLIELSKDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNG 301

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G F V N L+     +++G D   +L  + +L  V GR E + +      + V
Sbjct: 302 ILSSPLIGGFNVSNLLLVLATLLSLGYDIDKLLATVRQLTGVCGRMEML-SAKHKATVIV 360

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L++      G++  +FGCGGDRD+GKRP+M  IA   AD  IVTDDNP
Sbjct: 361 DYAHTPDALENALQSAAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNP 420

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R+E+PE+I  +I+ G            R +AI+TA++   + DV+++AGKGHE   I+  
Sbjct: 421 RTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGT 480

Query: 478 GEKKMSVDCDIIREIL 493
             K    D +I+++  
Sbjct: 481 -TKYHFSDQEIVKKYF 495


>gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
          Length = 484

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 268/503 (53%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E+I           E K+  +  D+R I+ G  FV + G K DGH FI
Sbjct: 1   MILKSLLKGLDYEVIKG-------NEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA+ ++V    S+Q+       +  I+ V +TRK L++ +S  +G   +   I+
Sbjct: 54  GDAIKKGAKTLIVQEDVSVQE-------DITIIKVRDTRKALAIMSSNYFGNPKDKLKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I +++G  +  IG   + I +   D   TTP    L +    +
Sbjct: 107 GITGTNGKTTSAFIIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV +  +E SSH L+  R+ GI+   G FTNL RDH+D+H+T + Y+NAK +LFE  
Sbjct: 167 VDAGVEYCVMEVSSHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFER- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTIS 294
               + +II  DD Y   ++K     G +         +       ++ +  N  +  ++
Sbjct: 226 ---SNHSIINLDDPYGANIVKDIEERGLKTKVSAFSIEKESDFKAFEIKSHSNGSEFKVN 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNS 353
           +E  + +F   +PGE+ +YN+L        + I    + E L  + + PGR E V    +
Sbjct: 283 LESIE-EFSINIPGEYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVI-PGRCELVAKEKN 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I +DYAHT + LE IL  ++  T  R+I VFGCGGDRD+ KRP MGKI  +L+DIA
Sbjct: 341 LPYSIIIDYAHTPDGLENILSTVKAFTKNRMISVFGCGGDRDKVKRPQMGKIGCELSDIA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I+T DNPRSE+P  I  +I+       F+ + NR EAIR A+ M  + DV+V+AGKGHET
Sbjct: 401 IITSDNPRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKGHET 460

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + E     + +++ +IL 
Sbjct: 461 YQILKD-ETIHFDEREVVYDILE 482


>gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
 gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
          Length = 493

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 159/489 (32%), Positives = 243/489 (49%), Gaps = 17/489 (3%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L  F +Q     + ++  DSR +  G +FVAI G++ DG  FI QA+AQGA A+V     
Sbjct: 9   LRPFGIQAPALTLTDIQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVVFEEDG 68

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
                S       P + + +    LS  A   Y +  + +  + +TGT+GKS+ A  V  
Sbjct: 69  EFIPPSTP----VPCIGMRDLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLVAN 124

Query: 136 ICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                G  +  +G           +   TT S + +   L+ L +QG   V++E SSHGL
Sbjct: 125 WRTLLGGKAGVMGTIGNGLFGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            QHR+  +   A  FTNL RDH+DYH T +AY  AK       L  ES A+I  DD    
Sbjct: 185 VQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAK--EQLLQLVDESNAVINRDDELGA 242

Query: 255 EVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++               + G+ +  +++       +  I+    +     PL G F 
Sbjct: 243 KWLEKYPAAVAFSVNGPIEHHSGRQLTAQQLDFHQQGFRAQINSSWGNGVLSAPLLGRFN 302

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L A G+ + +G D   +L    KL  V GR E  G         VDYAHT ++LE 
Sbjct: 303 VSNVLAAMGVMLVLGYDFNELLATAPKLQPVTGRMECFGGGDTPL-AVVDYAHTPDALEK 361

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  +A   AD  I+TDDNPR+E+P +I A+
Sbjct: 362 ALQALRVHCTGQLWCLIGCGGDRDRGKRPMMAAMAEQYADRVILTDDNPRTEEPARIMAD 421

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R++AI  AI   +KQD+++VAGKGHE   I+   +K+   D + 
Sbjct: 422 MVAGLRDPAAVQVEHDRVKAIALAIGQASKQDIILVAGKGHEDYQIIGT-DKRHYSDRET 480

Query: 489 IREILGLIL 497
           +   L  +L
Sbjct: 481 VAAALHTLL 489


>gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
 gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
          Length = 491

 Score =  322 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 152/468 (32%), Positives = 231/468 (49%), Gaps = 10/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR +  G IFVA+ G   DG  FIP A+  GA  IV        +  A   +   +
Sbjct: 26  IRSDSREVGKGDIFVAVPGVNADGARFIPPAVEAGASTIVC--LPGGAEAEAARAAGCTV 83

Query: 93  LVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +  D+ R+ L   A      G  P  +L VTGT+GK++ A  ++ +   +G     +G  
Sbjct: 84  VHHDDPREALWRLAEARWHTGSLPLRVLGVTGTNGKTTSAYLLEHLFTATGHKVGVLGTV 143

Query: 151 STISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           S       +   LTTP P+ +   L+ ++  GV    +E SSH L+Q R+ G+     SF
Sbjct: 144 SYRWPGHCEAAPLTTPDPLRVHAMLAAMAQAGVDIAVMEVSSHALEQQRVCGVPFAGASF 203

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +NL +DH+D+HQ  ++YF AK RLF EL   +    I  DD + + +++    A    L 
Sbjct: 204 SNLTQDHLDFHQDMESYFRAKSRLFLELPRADKVMAINGDDPWGRRLLELCPRALSFGLQ 263

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                +     ++ +                  L          + L++           
Sbjct: 264 KALPQQRHLWGELLSAGTDGCHLRMHLDGQQWELRSPLVGAFNASNLLSVQALALELGLM 323

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              L HLE  H V GR E V  N+R   ++VDYAHT ++L  +LK +R     RI+ VFG
Sbjct: 324 PDDLRHLEGFHGVCGRLERVP-NARKLHVFVDYAHTPDALVNVLKALRGAGFKRIVTVFG 382

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
           CGG+RD+ KRPIMG+     +D+A++T DNPR EDPE I  +++ G+      + + +R 
Sbjct: 383 CGGNRDRTKRPIMGEAVARYSDVAVLTSDNPRFEDPEAILKDVLPGLREDREVVVEVDRR 442

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +A   A+EML   D L++AGKGHE   I+  G K    D +++RE+LG
Sbjct: 443 KATAKAVEMLGPDDALLIAGKGHEDYQIIQ-GTKHHYSDQEVVRELLG 489


>gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
 gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
          Length = 484

 Score =  322 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 250/504 (49%), Gaps = 34/504 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I  ++        ++I+ ++ DSR I+ G IF+A+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPGHIFIAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I    + I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F +
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD     + +                    + +              +
Sbjct: 226 SLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLR-SPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +++R+I 
Sbjct: 459 ENYQEIK-GVKHHFDDKEVLRDIF 481


>gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 494

 Score =  322 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 156/498 (31%), Positives = 247/498 (49%), Gaps = 11/498 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+  +      L   + I    W +  +  +  DSR ++ G  F+AI+G+  DG ++I
Sbjct: 1   MTLEINLANL---LCPFVDISSYSWSKIGVKHLELDSRKVEVGSTFIAILGHNVDGRVYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI  GA A++  +          +R N PI+ VD+    LS  A R++      ++AV
Sbjct: 58  NEAIKSGANAVIAQACPLNTHGKTEVRDNVPIVFVDDLGIHLSSLAKRIFPLKNNKLIAV 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++   + Q  +     +  +G T        +    TT + I + + L  L  
Sbjct: 118 TGTNGKTTITQLIAQWFELVSCHAAVLGTTGNGFIDDLKPATNTTGNAIEVQQTLHALEQ 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG  + ++E SSHGL Q R+  ++   G F+NL RDH+DYH T + Y  AK  LF     
Sbjct: 178 QGAKYTALEVSSHGLSQGRVKALEFEVGIFSNLSRDHLDYHGTMENYEQAKFSLFN--QH 235

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               AII  DD   K  +    +A    L      + +  K V    N   +       D
Sbjct: 236 CCKQAIINIDDPVGKRWLGYLDSAVAVSLHPQDFPRSVWAKCVNYSVNGISLAFDGMFGD 295

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F   N L+A    + +G+D   ++     L  V GR E    + +  ++ 
Sbjct: 296 GEIEVALIGGFNANNVLIAMTTLLCMGVDKKQLIATAPLLRPVIGRMELFTASKQ-AKVI 354

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L  ++  + G + V+FGCGGDRD GKRP+MG+I+ +LAD  I+TDDN
Sbjct: 355 VDYAHTPDALEKALHALKDHSGGALWVIFGCGGDRDVGKRPMMGRISEELADRVIITDDN 414

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PRSEDP  I  +I  G+      + + +R  A++ AIE    +D++++AGKGHE   +++
Sbjct: 415 PRSEDPTLIVKDIQAGMSRPESVMVEHDRRAALKYAIEHSRPEDIILMAGKGHEDYQVLS 474

Query: 477 NGEKKMSVDCDIIREILG 494
           +       D +   E+LG
Sbjct: 475 D-RIIACSDREFALELLG 491


>gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
 gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
          Length = 495

 Score =  322 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 162/498 (32%), Positives = 251/498 (50%), Gaps = 16/498 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +LI          L +         I+ +  DSR I++G  FVAI G+  DG  FI +
Sbjct: 7   LSELIAPW-------LELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIAQGA  ++  +     +     R   P++ +    + LS  A RLYG H   ++ VTG
Sbjct: 60  AIAQGANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTG 119

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q  +  G  S  +G T        +    TT + + +   L  L+ +G
Sbjct: 120 TNGKTTITQLIAQWLELLGHKSAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 179

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + S+E SSHGL Q R+  +  +AG F+NL RDH+DYH T  AY  AK  LF E     
Sbjct: 180 AQYTSLETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHA--C 237

Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AII  DDA   + +K+  H  G  +L+     + I  ++V    +   +       + 
Sbjct: 238 QRAIINVDDAVGAQWVKQLPHAIGVSLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEG 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL GEF   N L+A    +++G + + +L    +L  V GR E      +     V
Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKM-VV 356

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L+ +    +G++  +FGCGGDRD+GKRP+M  IA   AD  I+TDDNP
Sbjct: 357 DYAHTPDALEKALRALHVHCTGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE P+ I A+++ G+        + NR +A   A++    QD++++AGKGHE   ++ N
Sbjct: 417 RSESPQAIVADMLAGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476

Query: 478 GEKKMSVDCDIIREILGL 495
                  D +  +++L L
Sbjct: 477 ETIHY-SDRETAQQLLEL 493


>gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii
           37]
 gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas ingrahamii 37]
          Length = 509

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 143/502 (28%), Positives = 223/502 (44%), Gaps = 23/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DLI     +               +++ ++ DSR I  G++F+A+ G + DG LFI
Sbjct: 8   MLLDDLIKPWLSDY----------DPSIRVSGLTLDSRQICRGYLFIALQGAQHDGRLFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +++  GA A++  +    +    TI+S  P+  V      LS  A R + +  +   ++
Sbjct: 58  EKSLKMGACAVLSETKNRSEHGQVTIKSGVPVFAVYKPAAILSALAYRFFFRKIKLHKVI 117

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
           AVTGT+GK+++AS +       G  S Q+G           + L TT   I +   L   
Sbjct: 118 AVTGTNGKTTIASLLADSFMLLGKQSAQMGTIGNGLFGQLKSSLNTTLDAISVFSELHCY 177

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q   +  +E SSHGLDQ R+  +   +  FTNL RDH+DYH + + Y  AK  LFE+ 
Sbjct: 178 QQQRAEYTIMEVSSHGLDQGRVSAVPFFSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKY 237

Query: 238 LPKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             K+      ADD    + +    +    G    ++  +  ++ +  V            
Sbjct: 238 PLKQRIIN--ADDPIGAQWLTDFPDAISYGFNAKALTDKQSYLRVTDVDYHAQGVTFAFH 295

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     P  G+F V N        +   +    V     KL  VPGR E      +
Sbjct: 296 SSWGKGVVSAPFYGDFNVSNLAAVLTQLLVENVSIEHVQTIFPKLSTVPGRMEQYYFAEK 355

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                VDYAHT ++LE +L  ++    SGR+I VFGCGGDRD GKRP M  IA   A   
Sbjct: 356 NITFVVDYAHTPDALEKVLLALQKHKSSGRLICVFGCGGDRDTGKRPQMANIAESYAQKV 415

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++ DDNPR+E+ + I  +I+ G           +R +A+   +      D++++AGKGHE
Sbjct: 416 VLVDDNPRTENAQSIIEDILQGFARPDRVEVIHDRRQAVNFLLNSAQSDDIVLLAGKGHE 475

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
              I          D + +  +
Sbjct: 476 DYQIFGTQRVHY-SDRECLASL 496


>gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 493

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 153/505 (30%), Positives = 243/505 (48%), Gaps = 25/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+                  +   I+ ++ DSR +  G +FVAI G+  DG  FI
Sbjct: 2   MQLSELLLPW-----------CDLNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENIL 118
             AI QGA A++  +       +  +  N  ++ +D+    LS  A   Y   K    ++
Sbjct: 51  SSAIEQGAVAVIADADKENIAGTVKVIDNAIVVYIDSLYTQLSAIAGAFYQADKRNMQLV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  + Q        +  +G T     S  +    TT SPI + + L+ L
Sbjct: 111 GITGTNGKTTISQIIAQWTTLLEQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTEL 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G    ++E SSHGL Q R++ +   A  FTNL RDH+DYH     Y  AK  LF   
Sbjct: 171 ENIGAKLTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSH 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTI 293
            PK S      DD    + +K   +A    L+           +    V       +++I
Sbjct: 231 RPKNSIIN--GDDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIKLSI 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S +  +  F  PL G F   N LVA    +++G D   + +   +L+ V GR E   T+ 
Sbjct: 289 SSDWGNVAFSVPLIGAFNASNILVAFAALLSLGYDIQALAQTASQLNAVIGRMELFATD- 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              ++ VDYAHT ++L+  L+ +R    G++  +FGCGGDRD GKRPIM  I    AD  
Sbjct: 348 NKAKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPIMASIVEQQADAI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I++DDNPRSE+P  I  +++ G+          +R EA + A+   N+ D++++AGKGHE
Sbjct: 408 ILSDDNPRSEEPSLITDDMLVGLKNAESAHVIHDRFEACQFALSQANENDIILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              ++ +       D +  + +LGL
Sbjct: 468 DYQVLADKTVHY-SDRETAQTLLGL 491


>gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii str. Madrid E]
 gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii]
 gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE
           (murE) [Rickettsia prowazekii]
 gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii Rp22]
          Length = 480

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 159/483 (32%), Positives = 250/483 (51%), Gaps = 23/483 (4%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
                ++  +I  +S++S+ ++   +F AI G   DG+ FI  A+  GA  ++  +  + 
Sbjct: 4   NLNQLFKNHRIKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNT 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                       ++ V++  K L       Y K P+N+++VTGT+GKSSV S++ Q    
Sbjct: 64  AIDK--------VIYVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQAYSL 115

Query: 140 SGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
               +  IG        + +       LTT   +   K    L+   + +++ EASSHGL
Sbjct: 116 LKKKAAFIGTIGLEIFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGL 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL   K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI+ +D    +
Sbjct: 176 EQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIE 235

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V    HN   + ++VG +G    + K+      Q +        ++    + G FQ  N
Sbjct: 236 FVKDYLHNNNVKFITVGKKGDL-QITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AA      G     ++E L K+  + GR E       G  I+VDY+HT +SLE  L 
Sbjct: 295 LLIAALTLYYTGFKFDEIIEALAKVKPIKGRMER----IDGTNIFVDYSHTPDSLEKALI 350

Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            ++ I     ++ V+FGCGGDRD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEI
Sbjct: 351 ELKNIKLHGSKLSVIFGCGGDRDKTKRALMGQIAAKLADNVIITDDNPRFEDPKLIRAEI 410

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           I GI    + E  +R EAI+  I  L + D+L++AGKGHET  I+ + +K    D +++R
Sbjct: 411 IRGIGTATYTEIASRAEAIKYGINNLKQDDILLIAGKGHETYQIIGD-KKLPFDDSEVVR 469

Query: 491 EIL 493
           + L
Sbjct: 470 KYL 472


>gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
 gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
          Length = 482

 Score =  322 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+    P       +      + +I  ++ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNKLLKAIQP-------VQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA A++        D      +    + V ++       A+  YG     +  +
Sbjct: 54  PTAIEKGAVAVLCE------DMPEEPVAGITYIQVKDSEDATGKIATTFYGDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +             ++ 
Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSNFKGRVLESHFEGML------LDF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVR-SPKGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D +I++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEILKEIF 481


>gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
 gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
          Length = 489

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 234/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+ +           +  +     I  +  DSRH+  G +F  + G   DGH F 
Sbjct: 1   MKLQTLLSRL-------PGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+ +GA AIV     S+      +          ++R+ +++ A   YG+    +  +
Sbjct: 54  EQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++Q+ +++G  +  IG     I   +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEQVARKAGKKTGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NA      +L
Sbjct: 165 VDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 +     +   D    +  K    A      +  +   +  +++          +
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIITYGIKEKSDVM-AEQIEMTPGGMAFQL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G F VYN L A   C+A G   A + E L  +  VPGRFE V    
Sbjct: 284 CTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGRFETV-DEG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +S+E  LK +R      + VV GCGGDRD+ KRP+M + A+  AD+A
Sbjct: 343 QNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYADVA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + T DNPRSEDP +I  ++  G+      ++   +R EAIR AI    + DV+++AGKGH
Sbjct: 403 VFTSDNPRSEDPRQILRDMEAGVSAGEGTYVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET  I+ + +     D  + R  
Sbjct: 463 ETYQIIGD-DVIDFDDRAVARAA 484


>gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 2; AltName:
           Full=Meso-A2pm-adding enzyme 2; AltName:
           Full=Meso-diaminopimelate-adding enzyme 2; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           2
 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum ATCC 824]
 gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum EA 2018]
          Length = 483

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 155/504 (30%), Positives = 249/504 (49%), Gaps = 31/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+     +LI              I  +S +S+ ++  ++FV+I G + DGH FI
Sbjct: 1   MKLKQLLQNIDYDLIKG-------DININIEGISYNSKKVKQNYVFVSIKGARFDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA A+++   +           NT ++ V N++  L+   +  Y +     N++
Sbjct: 54  KEAAQNGAAAVIIDEDFHDS------IENTTLVKVKNSKVALACLCNLFYEEPSRELNLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST----ISSFAQDNRLTTPSPIYLAKAL 174
            VTGT+GK++V  +++ + +  G S+  IG             +    TTP  + L + L
Sbjct: 108 GVTGTNGKTTVIHYIRDMLEAFGNSTGTIGTLGYELKDKEINVEKINPTTPEALELNQIL 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +G  +  +E +S  L +HR+D      G FTNL +DH+D H T + Y N K++LF
Sbjct: 168 RDFIDKGAKNAVMEVTSSALMKHRVDYCSFKVGVFTNLSQDHLDEHGTIENYKNEKIKLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +         +I  DD  + E++++          +           +    N     + 
Sbjct: 228 KM----CPVGVINLDDNIAGEIIEKGTCEFFTYGVLTNADLT--ASDMVYKPNSVSFNVH 281

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G        +PGEF VYN L A G  + +GID   +L+ +  +  V GR E    N  
Sbjct: 282 YKGISSKVKVNVPGEFTVYNVLAAIGSLLCLGIDFESILKLVSSIKPVLGRLE-TINNPL 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I +DYAHT +SLE +L   R +T+GRII VFGCGGDRD+ KR +MG     L+D  I
Sbjct: 341 NKNIIIDYAHTPDSLEKLLIMAREMTNGRIITVFGCGGDRDKSKRGLMGMAVGILSDYCI 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T DNPR E PE I  +I  G+      + +  +R  AI+  IE+L ++D+L++AGKGHE
Sbjct: 401 ITSDNPRHEKPEDIIRDIERGMQTINSSYEKITDRRCAIKRGIEILKEEDILIIAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
              I+ +  K    D +++ E+LG
Sbjct: 461 DYQIIGDN-KVHFDDREVVNELLG 483


>gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
 gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
          Length = 502

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 251/499 (50%), Gaps = 31/499 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+ L++    E+I      P       I  +  DSR +QA  +FVA+ G + DGH +I 
Sbjct: 3   NLKQLLH--HIEVIQTRGNAPES-----IENIHFDSRKVQANDLFVAVKGTQADGHQYIG 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QA+A GA+ +V  +      F   +  +   + V N+ K L   AS  Y    +   ++ 
Sbjct: 56  QAVALGAKVVVCET------FPKNLSDSATYIQVANSAKALGWLASNYYDHPSKKLKLVG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT+GK++  + + Q+ ++ G     +    + I   A   RLTTP P+ L + ++ + 
Sbjct: 110 ITGTNGKTTTVTLLHQLFRKFGYRVGLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMV 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G TH  +E SSH + Q R+ G+     +FTN+  DH+D+H+T   Y NAK + F++ L
Sbjct: 170 KAGCTHCFMEVSSHAVVQERIAGLHFTGAAFTNISHDHLDFHETFANYINAKKQFFDQ-L 228

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P  + A+I ADD     +++       R  ++     F       ++       + +E  
Sbjct: 229 PPTAFALINADDKRGMVMLQNTVAKTQRTFALKQFADFKARVVESSLQG-----LFMEID 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D +  F + G F  YN L    + + +G D+   L  L  L  VPGRFE +     G   
Sbjct: 284 DVEVWFQMIGYFNAYNLLGIYAIAVLLGEDTTETLTLLSGLQSVPGRFEKI-IGESGATG 342

Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VDY+HT ++LE +L+ I  +     +II V GCGG+RD  KRPIM +IA   +D+ I T
Sbjct: 343 VVDYSHTPDALENVLQTIFELRQSGQKIITVVGCGGNRDASKRPIMAQIACQYSDVVIFT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR+E P +I  ++  G+     P      +R +AIR A E+  KQD+++VAGKGHET
Sbjct: 403 SDNPRNEPPMQILEDMQEGVSIDDEPKTSLIASRKDAIRKACELAQKQDIILVAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIR 490
              +  G +    D  +++
Sbjct: 463 YQEIA-GVRHPFDDRLVLK 480


>gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi ATCC BAA-1116]
 gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 150/495 (30%), Positives = 241/495 (48%), Gaps = 9/495 (1%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      + +    +         ++E+  DSR +Q+G  FVAI+G+  DG  FIP AI 
Sbjct: 1   MTKAISMDTLLSTWVDCPSLSSILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++  +       +  I  + P++ +D   K LS  A  LY     +++ VTGT+G
Sbjct: 61  QGANAVIAQACEQKAHGTIEIVDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++   + Q     G  +  +G T        Q+   TT + + + K LS L+ Q   +
Sbjct: 121 KTTITQLIAQWIDLVGSKAAVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQY 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG FTNL RDH+DYH T +    A  +L      +   A
Sbjct: 181 TALEVSSHGLIQGRVKALSFAAGVFTNLSRDHLDYHGTMEE--YANAKLTLFTEHQCGHA 238

Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +I  DD       K+  +     +       + ++   +    +   +    +  +    
Sbjct: 239 VINVDDVVGAAWAKQLNNALAVSLKPTTEFSQSVYANHIAYAESGITIEFDGKFGEGTLH 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G     +L    +L  V GR E    N    ++ VDYA
Sbjct: 299 APLIGEFNAANLMLAFTTLLSLGFSKQDLLATAGQLQPVLGRMELFQAN-DNAKVVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G +  + GCGGDRD GKRP+M +IA  L D  ++TDDNPRSE
Sbjct: 358 HTPDALEKALQALRVHCHGELWAILGCGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP  I   ++ G+      I + +R +A+  A+E  + QD++++AGKGHE   I+ +G  
Sbjct: 418 DPALIMKGMLAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKGHEDYQILNSGTI 477

Query: 481 KMSVDCDIIREILGL 495
               D +    +LGL
Sbjct: 478 HY-SDRESAMTLLGL 491


>gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 483

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 161/502 (32%), Positives = 239/502 (47%), Gaps = 33/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGW-IFVAIVGNKEDGHL 58
           M+L  L+          L+   ++  E  +++ +  DSR I+    +F+AI G K DGH 
Sbjct: 1   MELSKLL--------TGLNYVCVKGNEHQEVDHMIYDSR-IKTNAGLFIAIEGFKTDGHQ 51

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           FI  AIA GA+AI+V     +++       +  I+ V++TR  ++L A+  YG   +   
Sbjct: 52  FIEAAIANGAKAILVQKDVEIKE-------DVTIIKVEDTRLAMALVANNAYGHPSKQFE 104

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175
            + VTGT+GK+S+   + QI +        IG   + I S       TTP  + L     
Sbjct: 105 LVGVTGTNGKTSITFLLGQILEAYHKKIGIIGTIENRIGSQILKAERTTPESLDLQALFK 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +    V    +E SSH L   R+ G     G FTNL +DH+D+HQT + Y  AK +LF 
Sbjct: 165 KMVESQVDTTLMEVSSHALALSRVAGSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKLFT 224

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    I+  D  Y  E++K A                     V       + T+  
Sbjct: 225 M----CETGIVNKDSDYINEIIKGATCNLVTYAIDKDADY--KATNVIITAAGVEYTLVC 278

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +   F    P+PG+F VYN L       A+ I    +L  L+    VPGR +    + +G
Sbjct: 279 DQGTFKVDVPIPGKFTVYNTLAVIAAARALEIPMTHILATLKIAKGVPGRVQAFK-SIKG 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT + LE +L  I+    G II VFGCGGDRD+ KRPIMGKIA   +D   +
Sbjct: 338 YSVLVDYAHTPDGLENVLSTIKEFAQGHIITVFGCGGDRDKTKRPIMGKIAATYSDHVFI 397

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+EDP  I  E+  G+      +++  +R  AI  A+     +DV+++AGKGHE 
Sbjct: 398 TSDNPRTEDPLLILDEVEVGVKAITDNYVKVEDRKAAIEMALSEAKAEDVVLIAGKGHEN 457

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ +       D +I+   L
Sbjct: 458 YQILKD-RIIHFDDSEIVNAYL 478


>gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
 gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
          Length = 498

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 152/508 (29%), Positives = 238/508 (46%), Gaps = 37/508 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+D+ YK          +        ++  ++ DSR    G +F+A+ G   DGH +I
Sbjct: 7   MQLKDIFYKIPL-------LATSGSMNTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI QGA AI+        +  A    +   + V N+ + + L A+  Y +  +   ++
Sbjct: 60  ETAIQQGATAILCE------EIPAETNPDVAYIRVQNSARTMGLVAANFYDQPSQKLKLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SVA+ + ++ +  G     +    + I         TTP  I   + L+ +
Sbjct: 114 GVTGTNGKTSVATLLFRLFRALGYRCGLLSTVQNQIDDDVIPATHTTPDVITTNQLLTKM 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G THV +E SSH + Q R+ G+  + G FTN+  DH+D+H T   Y  AK   F + 
Sbjct: 174 LAHGCTHVFMEVSSHAVVQERIAGLSFVGGIFTNITHDHLDFHGTFDNYIRAKK-GFFDQ 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+   DD     +++                    +             +++  
Sbjct: 233 LPASAFALTNVDDKRGLVMLQNTVARKETYSLQTLASFKGKILADSLFG------LNMLI 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +  F L G+F  YN L   G  I +G D   VL  L  +   PGRFE V  +     
Sbjct: 287 DEREVWFKLIGQFNAYNLLSVYGTAILLGEDPTEVLTMLSGITPPPGRFEQV-VSDDKIV 345

Query: 358 IYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             VDYAHT ++L+ +L+ I  +          +II V GCGG+RD  KRPIM  IA  L+
Sbjct: 346 GIVDYAHTPDALQNVLETINELRSTDEQDYMPQIITVVGCGGNRDTSKRPIMADIACRLS 405

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  I+T DNPR+EDP  I  ++  G+        I   +R EAIR A+E+    D+++VA
Sbjct: 406 NRVILTSDNPRNEDPMDILEQMQAGVSPVDFKKTITIEDRHEAIRKAVELAKPHDIILVA 465

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHET   +  G K    D  ++R+  
Sbjct: 466 GKGHETYQEIK-GIKYDFDDRVVLRDAF 492


>gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
 gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
          Length = 457

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 161/472 (34%), Positives = 243/472 (51%), Gaps = 25/472 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  ++ +S+ +  G+IFVAI G   DGH F+ +A+ +GA  + V     ++D       
Sbjct: 2   EVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIEDP------ 55

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I+ V +TRK L       YG+  E   ++ VTGT+GK++    ++ + + +G+    
Sbjct: 56  --RIVKVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGIKVGL 113

Query: 147 IGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG           +    TTP P+     L  +   G   V  E SSH L Q R+ G K 
Sbjct: 114 IGTIYYRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWGTKF 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH   + YF+AK+ LF +   + S     ADD Y K ++       
Sbjct: 174 FTTIFTNLSQDHLDYHGDMENYFSAKLLLFTQYPQEFSVIN--ADDPYGKRIVSVVGKRA 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                 G       +          ++ +  EGK + F   L GEFQ YN   A      
Sbjct: 232 RTYGKEGDL----RITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILTAFL 287

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GID  +V E ++ + V PGRFE    +  G  + VDYAHT ++LE +L+  R IT GR+
Sbjct: 288 RGIDPQVVEEGVKDVRV-PGRFETYRKD--GKTVIVDYAHTPDALEKLLRTARGITRGRL 344

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441
           +VVFG GG+RD+ KRP+MG++A + AD+ ++T DNPR EDP  I  +I+ GI      + 
Sbjct: 345 LVVFGAGGNRDRTKRPLMGEVAQNWADVIVLTSDNPRWEDPISIIEDIMEGISQKNKVLV 404

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + +R +AIR A+EM  + DV+V+AGKGHE    +  G +    D  ++REIL
Sbjct: 405 EPDREKAIRLAVEMAKEGDVVVIAGKGHEDYQEIK-GVRYPFSDSAVVREIL 455


>gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae
           WPP163]
          Length = 495

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 168/505 (33%), Positives = 248/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+     +             E  + E++ DSR   AG +FVAIVG+K DG  +IP
Sbjct: 5   NLRDLLAPWVQD-----------TPELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AIV  +     D +       P++ + N  + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAIVAEAEGETADGTVREMHGVPVIYLSNLNQRLSALAGRFYQQPAEKLQLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G         A     TT S + + + LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL Q+R+  +   A  FTNL RDH+DYH   ++Y  AK  LF E  
Sbjct: 174 EQGATFAAMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWALFAEHR 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +      ADD      + +  +A    +      G +G+++   ++    N   +   
Sbjct: 234 VGQMIIN--ADDEVGLRWLAKLPDAVAVTMANNLVPGCRGRWLKATQIDYHDNGATIAFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +    L G F V N L+A    +++G     ++    +L  V GR E      +
Sbjct: 292 SSWGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +
Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCLGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPRSE+P+ I  +I+ G+           R EA+ +AI    + DV+++AGKGHE 
Sbjct: 411 VTDDNPRSEEPQAIVTDILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             +V N       D   +  +LG+I
Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494


>gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
 gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
          Length = 494

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 144/482 (29%), Positives = 231/482 (47%), Gaps = 9/482 (1%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                +     + ++  DSR  + G IFVA+VG+  DG  FI +A+A G  A++  +   
Sbjct: 16  DFSSPELESIAVEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAE 75

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                       P++ ++N    LS  A R+Y      ++ VTGT+GK+++   + Q   
Sbjct: 76  KPHGLIEWLDTVPVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLD 135

Query: 139 RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G  S  +G T        +    TT S I + + LS L+++   + ++E SSHGL Q 
Sbjct: 136 LVGQRSAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQG 195

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+  +    G FTNL RDH+DYH T +    A  +       K   A+I  DD   K  M
Sbjct: 196 RVKALDFEVGVFTNLSRDHLDYHGTMEE--YALAKKSLFTQHKCKHAVINVDDEVGKAWM 253

Query: 258 KRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
               NA       +    + +    V       Q++            PL G+F   N L
Sbjct: 254 SDLSNAIAVSLSPLTGYQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVL 313

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA    +++GID  ++++   +L  V GR E         ++ VDYAHT ++LE  L  +
Sbjct: 314 VAFATLLSLGIDKQILVDTAPQLQPVIGRMELF-QVPNKAKVVVDYAHTPDALEKALAAL 372

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   SG++  +FGCGGDRD GKRP+M   A   AD  I++DDNPRSE+P  I  +++ G+
Sbjct: 373 RVHCSGKLWAIFGCGGDRDTGKRPMMSATAEQFADKIIISDDNPRSEEPALIVKDMLAGL 432

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                   + +R +A++ A+E     D++++AGKGHE   ++ +       D +   ++L
Sbjct: 433 SKPEAAFVEHDRYQAVKFALEQAGSDDIILLAGKGHEDYQVLKDKTVHY-SDRESALQLL 491

Query: 494 GL 495
           G+
Sbjct: 492 GI 493


>gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
 gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
          Length = 500

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 140/510 (27%), Positives = 230/510 (45%), Gaps = 40/510 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +     +I  +  DSR I +G +F+ + G   DG     
Sbjct: 9   KLKELANLLLIK-------ETIGDMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDR 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
           H F+  A+  GA A++V    +++          P ++V + R  +++ AS  Y      
Sbjct: 60  HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYSYPSNE 110

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
             ++ +TGT+GK++ +  +++I    G  +  +G     I S      + T     L + 
Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILTDYGFQTGIMGNNGVKIGSKWYPTDINTQESPALQRN 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--- 230
           L  + +    +  +E +S GL   R+ G       FTNL +DH+DYH T + Y + K   
Sbjct: 171 LQMMKNHNTDYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFEEYKHVKGLL 230

Query: 231 --MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                 +     +  AI+ ADD   +   K               G  +  K +      
Sbjct: 231 FSRLGNDFSATDKKIAILNADDPSVEYFKKVTSAEVITYGINN--GADVQAKSITLSSKG 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q  +S    + +    L G F VYNAL      +  GI    + + L  +  + GR E 
Sbjct: 289 IQFLVSSFNGEIEINLNLVGRFNVYNALAVITATLVEGIPLTNISDSLSHVKSIEGRMEI 348

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   ++   + VDYAH+ ++LE +L  I   +  +II VFGCGGDRD  KRPIMG+IA  
Sbjct: 349 I-DENQDFLVIVDYAHSPDALENVLSTISEFSKAKIITVFGCGGDRDAKKRPIMGEIAGG 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI+M +  D+++
Sbjct: 408 YSDFVYITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAIQMASSNDIVL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       D +I R+ +
Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEIARQAI 496


>gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D4]
 gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides dorei 5_1_36/D4]
          Length = 484

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 250/504 (49%), Gaps = 34/504 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I  ++        ++I+ ++ DSR I+ G IF+A+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPGHIFIAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I    + I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F +
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD     + +                    + +              +
Sbjct: 226 SLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLR-SPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +++R+I 
Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIF 481


>gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 510

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 162/509 (31%), Positives = 257/509 (50%), Gaps = 31/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+  +   +I           + +++ VS DSR I+  + F ++ G+  DG  +I
Sbjct: 1   MKLRELLSDESAFVIGD--------EDTEVSGVSYDSRKIEKDYAFFSLPGHNTDGRKYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AIA GA  I+  S Y          ++   +V+ +  +F+SLF ++ Y       NI+
Sbjct: 53  AEAIANGASVIITDSKYDT--------NDVAQVVIKDIFRFMSLFGAKFYNYPDRELNIM 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V   ++ I   SG+    IG  +        +   TTP  + + + +  +
Sbjct: 105 GITGTNGKTTVTYMIESILANSGIECGVIGTVNYRYKGKVIEANNTTPQSLDIYRIMRDI 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
           S+ G+ ++ +E SSH L   R+ GI+     FTNL R+H+D+H+    YF AK  LF+E 
Sbjct: 165 SNNGIKYLVMEVSSHALSLGRVYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKEL 224

Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +  AII  DD Y ++++K   +A  +   ++           +   +      
Sbjct: 225 GAGKKNNKKCAIINVDDEYGRKLLKVGISAEIKLYSAIEKNAADFKASNIKVTNKGAVFN 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    K         G   VYNAL A    +   I     +E L     VPGR E V T 
Sbjct: 285 LVFCNKRARIRIKHIGVHNVYNALAALAAAVCSEISFENAVEGLNNSSRVPGRLEKVNTI 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I VDYAHT ++LE +L+ ++ +   RII+VFGCGGDRD+ KRP+MGKIA++++D 
Sbjct: 345 GLGFEIVVDYAHTDDALESVLRALKDLNPKRIIIVFGCGGDRDRAKRPLMGKIAVEMSDF 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEM-LNKQDVLVVAG 466
             VT DNPR+EDP +I  +I  GI       +    +R  AI+  I M  +K D++++AG
Sbjct: 405 VFVTSDNPRTEDPYQIILDIEVGIKRAGKKNYKVVVDREAAIKEVIMMAADKGDIILLAG 464

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHET  I + G K    D  I  + + L
Sbjct: 465 KGHETYQITSGG-KVHFNDVKIAEKYIDL 492


>gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
 gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
          Length = 493

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 149/508 (29%), Positives = 230/508 (45%), Gaps = 30/508 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+      +            +  I  +  DSR I+ G +F A  G K DG  FI
Sbjct: 1   MHLSQLLRGMNISIAT----------DPIIKGLCQDSRQIKPGDLFFAYKGLKSDGRYFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI +GA AI+V    +      +  S+ PI+ + +    L   A+R YG       ++
Sbjct: 51  KDAIKKGAAAILVEPDENYTIHLKS--SSIPIIALHHLTSQLGSLAARFYGYPSRYLPVI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+S   F+    Q+   S   IG          +  +LTTP  I L + L+  
Sbjct: 109 GITGTNGKTSCTHFLADSLQKLQRSCGVIGTLGNGFYGHLKRAQLTTPDAIELQQLLAAF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +Q    V +E SSH L Q RL+G +    + TNL RDH+DYH+T  AY  AK +     
Sbjct: 169 RAQHAQTVVMEVSSHRLAQKRLNGTEFSVAALTNLTRDHLDYHKTMDAY--AKAKRSFFE 226

Query: 238 LPKESPAIIYADDAYSKEVMKRA-------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           LP     ++ ADD Y++  +            +  R  +       + +KK        Q
Sbjct: 227 LPGVQHIVLNADDPYAQLWLTEFEKQLPISTYSLKRPQARWSHIPQVTVKKFDFNQQGLQ 286

Query: 291 VTISVEGKDFDFLFPLPGEFQV-YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             I     D               N L+   +  ++    A + + L +L    GR +  
Sbjct: 287 AEIDTPWGDVFIENQFLMGAFNLSNLLLVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTF 346

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + VDYAHT ++L+ +L+ +R+   G++  +FGCGGDRD+GKRP+M  IA + 
Sbjct: 347 RVKG-KAIVVVDYAHTPDALQQVLQALRSHCRGQLYCLFGCGGDRDKGKRPLMAAIAEEG 405

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  IVT+DNPR EDP +I  +I  G  G      +  R +AI  A++     D++++AG
Sbjct: 406 ADHIIVTNDNPRYEDPFQIFQDIRQGFKGNKAIYYEPERKKAIAYALKAAQPSDIVLIAG 465

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHE+   + +G      D   ++  L 
Sbjct: 466 KGHESYQSI-HGINYPFDDAVEVQHFLN 492


>gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 500

 Score =  321 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 149/501 (29%), Positives = 246/501 (49%), Gaps = 23/501 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +++  +S      ++  IN +S DSR I  G +FVA+ G   DGH F+  AI  GA A
Sbjct: 3   ISKILENVSAKKSYSKDIDINNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           +VV+S+  +   +     +  ++ V++T K L   A+  YG+  E  N++ +TGT+GK++
Sbjct: 63  VVVNSSSDVPCLAKY--PDIQVIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A+ + ++    G  +  I           ++   TTP+ +   + L+ +   G  +  +
Sbjct: 121 TATLLYKLFLGMGFGAGLISTIKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCFM 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH   Q R+ G+      FTNL +DH+DYH+T   Y +AK  LF + LP+ + A+  
Sbjct: 181 EVSSHATVQQRIAGLTFRGAVFTNLTQDHLDYHKTMDNYRDAKK-LFFDHLPQTAFALTN 239

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFLFP 305
           ADD     +++          +         + +        + +  ++ +GK+   +  
Sbjct: 240 ADDRNGNFMLQNTKAQRYTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYEVST 299

Query: 306 LPGEFQVYNAL-----VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                     L      AA LC   GID+  +L  L +L  V GRFE +     G    V
Sbjct: 300 PFVGSFNAQNLTAVFGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVIRMA--GISAIV 357

Query: 361 DYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           DYAHT ++L+ +L  I  +     R++ V GCGGDRD+ KRPIM + A   +D  ++T D
Sbjct: 358 DYAHTPDALKNVLSTINDVKSPDSRVVTVVGCGGDRDKTKRPIMAQEAAAQSDTLVLTSD 417

Query: 419 NPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           NPR+EDP+ I  ++  G+        I   +R +AI+TA ++    D+++VAGKGHE   
Sbjct: 418 NPRTEDPQSILDDMAKGLDKNRLEDTIVIVDRRQAIKTACKLAKSGDIVLVAGKGHENYQ 477

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           IV   EK+   D + +   L 
Sbjct: 478 IVG-KEKRHFDDKEEVIASLS 497


>gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
 gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 239/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       I  +   E +I  V+ DSR +QAG +F+A+ G + DGH +I
Sbjct: 1   MILSELLKAIQP-------IQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA A++        D     +     + V ++ + +   A+  Y      +  +
Sbjct: 54  PAAIEKGAVAVLCE------DVPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   A     TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +E SSH + Q R+ G++   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADSGCKYVFMEVSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +              + 
Sbjct: 228 -PKGAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGKILESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G F   N L   G  + +G     VL  L  L  V GRF+ V  + +G  
Sbjct: 281 NNHELAVHFIGRFNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVR-SPKGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G+II V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKIITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKDDMQKTISIADRREAIKTACMLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V  G K    D + ++ I+
Sbjct: 460 NYQEVK-GVKHHFDDKEELKAIM 481


>gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
 gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
          Length = 499

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 143/510 (28%), Positives = 232/510 (45%), Gaps = 40/510 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +   + +I  +  DSR I  G +F+ + G   DG     
Sbjct: 9   KLKELANLLLIK-------ETIGDMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDR 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG     
Sbjct: 60  HQFVEGAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK++ +  +++I    G  +  +G     ++S      + T  P  L + 
Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVNSKWYPTDINTQEPPTLQRN 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  L
Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFHEYKHVKGLL 230

Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F          ++  A++ ADD   +   K                     K +      
Sbjct: 231 FARLGNDLSTTEKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADV--QAKNINLSPKG 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +S    + +    L G F VYNAL A  + I  GI    + + L  L  + GR E 
Sbjct: 289 IRFLVSSFNGEIEISLNLVGRFNVYNALAAITVAIVEGIPLTNICDSLSNLKCIEGRMEI 348

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   ++   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA  
Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+++
Sbjct: 408 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       D +  R+ +
Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496


>gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
 gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
          Length = 484

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 249/504 (49%), Gaps = 34/504 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I   S        ++I+ ++ DSR I+ G IFVA+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDAS--------QEISGINMDSRLIEPGHIFVAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I    + I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F +
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD     + +                    + +              +
Sbjct: 226 GLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGAACLLGKKTEEVLLALSTLRPVAGRFDSLR-SPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +++R+I 
Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIF 481


>gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
 gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
          Length = 495

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 161/498 (32%), Positives = 249/498 (50%), Gaps = 16/498 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +LI          L +         I+ +  DSR I++G  FVAI G+  DG  FI +
Sbjct: 7   LSELIAPW-------LELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIAQGA  ++  +           R   P++ +    + LS  A RLYG H   ++ VTG
Sbjct: 60  AIAQGANIVLAEADAHHAHGQVEFREGVPVIYLAELGQHLSELAGRLYGGHQNQLIGVTG 119

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+ +G
Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 179

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T  AY  AK  LF E     
Sbjct: 180 AQYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHA--C 237

Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AII  DDA   + +K+  H  G  +L      + I  ++V    +   +       + 
Sbjct: 238 QRAIINVDDAVGAQWVKQLPHAIGVSLLVQPNTAQAIWARQVQYAESGITLDFDSSWGEG 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL GEF   N L+A    +++G + + +L    +L  V GR E      +     V
Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKM-VV 356

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L+ +R   +G++  +FGCGGDRD+GKRP+M  IA   AD  I+TDDNP
Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE P+ I A+++ G+        + NR  A   A++    QD++++AGKGHE   ++ N
Sbjct: 417 RSESPQAIVADMLAGLTHPERAHIEHNRFHAASYALQNAGAQDIILLAGKGHEDYQVLAN 476

Query: 478 GEKKMSVDCDIIREILGL 495
                  D +  +++L L
Sbjct: 477 ETIHY-SDRETAQQLLEL 493


>gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806]
          Length = 496

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 161/500 (32%), Positives = 235/500 (47%), Gaps = 16/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+      +     I        +I  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLQELLAN----ITPVSPISSPIASITEITGISTNSHACQPGDLFIGLPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  GA     +              +  ++VV +     +  A++ Y        ++
Sbjct: 57  RSALETGAL---AALISPAAAAKFPPPEDACVIVVADLVTATAAIAAKFYHYPALTLKLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++G+ +   G   T     Q+    TTP    L  +L+  
Sbjct: 114 GVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKA 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G     +E SSH L Q R+ G       FTNL RDH+DYH   + YF AK +LF   
Sbjct: 174 VSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPD 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII  DDAY + +            SV       + K +       +  +    
Sbjct: 234 -YLQGKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQSTGVEGVMVTPQ 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356
            +  F  PL G++ + N L A    +  G+D   V+  + +   VPGR E       +  
Sbjct: 293 GEIAFASPLVGQYNLANLLAAVAAVLECGVDLETVIGQIPQFSGVPGRMERVSIAPDQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R   SGR+I VFGCGGDRD+ KRP+MGKIA +LAD+AIVT
Sbjct: 353 SVIVDYAHTPDSLENVLKATRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAIVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E PE+I  +II GIP         +R  AI TAI+     D +++AGKGHE   
Sbjct: 413 SDNPRTEAPERILEDIIAGIPPEITVQVISDRALAIDTAIQTAQPGDGVIIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 473 ILGT-EKIHFDDREQARAAL 491


>gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
 gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
          Length = 505

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 162/503 (32%), Positives = 243/503 (48%), Gaps = 19/503 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          +   P++  E +I+ ++ DSR + +G +F A+ G+  DG  +I
Sbjct: 8   MKLGALLSPWLA-----IDKLPLELTEIQIDAITLDSREVISGSLFTAVNGHTVDGRRYI 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  GA AI+  +     +    ++    I+ + +    LS  A R +    + +   
Sbjct: 63  ETAIKAGASAIIAEADGIANEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALY 122

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  + Q    +G  +  +G T     +  +    TT S I + + LS L
Sbjct: 123 AVTGTNGKTTISQLLAQWANLAGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLSQL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+  I   A  FTNL RDH+DYH   Q Y NAK  LF E 
Sbjct: 183 VEQGADFTAMEVSSHGLVQGRIRDIHFKASIFTNLSRDHLDYHGCMQNYANAKKSLFTEH 242

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   AII ADDA     +K   NA            + G  +    V        +  
Sbjct: 243 QSRM--AIINADDAVGASWLKDIPNAVAVAIDPQAVANHAGLKLWATDVRFSTQGVTIEF 300

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F  PL G F   N L+A    +A     A +LE   +L  V GR E    ++
Sbjct: 301 DSSWGLGKFTAPLVGSFNATNLLLALATLLATNHSMADLLEKAPQLQAVIGRMEVF-QDT 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M +IA  L+D  
Sbjct: 360 DKAMMVVDYAHTPDALEKALQALRVHCDGKLWCIFGCGGDRDNGKRPMMAEIAERLSDCI 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+TDDNPRSEDP  I  +++ G+          +R  A R A+   ++QD+++VAGKGHE
Sbjct: 420 ILTDDNPRSEDPNGIVDDMLTGLISPESATIIHDRETACRHALTHASRQDIILVAGKGHE 479

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ +       D + +  +L
Sbjct: 480 DYQILADRTIHY-SDRETVAALL 501


>gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
 gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
          Length = 495

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 161/498 (32%), Positives = 251/498 (50%), Gaps = 16/498 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +LI          L +         I+ +  DSR I++G  FVAI G+  DG  FI +
Sbjct: 7   LSELIAPW-------LELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIAQGA  ++  +     +     R   P++ +    + LS  A RLYG H   ++ VTG
Sbjct: 60  AIAQGANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTG 119

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+ +G
Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 179

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T  AY  AK  LF E     
Sbjct: 180 AQYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHA--C 237

Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AII  DDA   +  K+  H  G  +L+     + I  ++V    +   +       + 
Sbjct: 238 QRAIINVDDAVGAQWGKQLPHAIGVSLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEG 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL GEF   N L+A    +++G + + +L    +L  V GR E      +     V
Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREHKAKM-VV 356

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L+ +R   +G++  +FGCGGDRD+GKRP+M  IA   AD  I+TDDNP
Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE P+ I A+++ G+        + NR +A   A++    QD++++AGKGHE   ++ N
Sbjct: 417 RSESPQAIVADMLVGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476

Query: 478 GEKKMSVDCDIIREILGL 495
                  D +  +++L L
Sbjct: 477 ETIHY-SDRETAQQLLEL 493


>gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 533

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 141/498 (28%), Positives = 230/498 (46%), Gaps = 19/498 (3%)

Query: 7   IYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  +  +LI  L +   + + +R++  + +DSR +  G +F AI G + DG+ +I +A+ 
Sbjct: 38  LNPNVGDLIQGLELRLRKGKLDREVTCLITDSRRVVPGALFFAIGGLRTDGNYYIEEAVD 97

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA AI+                    + V++ R  L++ A   YG+  E  L +TG +G
Sbjct: 98  RGAVAIITEQDLGSHFP-------IDYIQVEDVRMALAVVAREFYGRPDER-LGLTGVTG 149

Query: 126 KSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            +   +    +    G       IG     I      +  TTP  + +   LS +   G 
Sbjct: 150 TNGKTTVSMLVQHLIGGDDKVGLIGTIRYDIGPRTLPSFRTTPESVDVYALLSQMEDGGC 209

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SSHG+DQ R+ G+ +    F NL +DHIDYH++ +AY+ AK  LF        
Sbjct: 210 KDAVMEVSSHGVDQKRVYGLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIGRAGAVP 269

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFD 301
            + +   D      +        R L+ G      +  +KV  + +  +  +   G    
Sbjct: 270 HSAVVNMDCAYGRRLLTELPGDVRALTFGEHADAQVRAEKVRLLADHTEFELYWPGGQAT 329

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            + PL G + V N L A     A G +   +++ +     VPGR E +    +   + VD
Sbjct: 330 VVSPLLGRYNVSNLLAALATGWAKGFEIEHLVKRIPSFRGVPGRMELIH-EKQPYNVLVD 388

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L+     +R IT G++IVVFGCGGDRD+ KR +M K  L+ AD    T DNPR
Sbjct: 389 YAHTDDALKNATGMLREITPGKLIVVFGCGGDRDRSKRSLMLKATLEHADQIFATSDNPR 448

Query: 422 SEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           SE  E+I  ++  G    +       +R  AI  A++     D +++AGKGHE+     +
Sbjct: 449 SESVEQIFEDMRLGNETSLDRVEFIEDRKHAISRALDAAQAGDCVLIAGKGHESFQEF-D 507

Query: 478 GEKKMSVDCDIIREILGL 495
           G      D  + RE++ L
Sbjct: 508 GSVVPFDDRQVARELIQL 525


>gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
 gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
          Length = 500

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 141/510 (27%), Positives = 230/510 (45%), Gaps = 40/510 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +     +I  +  DSR I +G +F+ + G   DG     
Sbjct: 9   KLKELADSLLIK-------DTIGNMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDR 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+  A+  GA A++V    ++Q          P ++V + R  +++ AS  YG     
Sbjct: 60  HQFVEDAVKNGAVALIVERDVNIQ---------IPKIIVKDARYAMAIIASHFYGYPSNK 110

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           I  + +TGT+GK++ +  +++I    G  +  +G     +        + T  P  L + 
Sbjct: 111 IKLIGITGTNGKTTTSYLLEKILTDHGFQTGLMGNNGVKVGPKWYPTDINTQEPPILQRN 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--- 230
           L  + +    +  +E +S GL   R+ G       FTNL +DH+DYH T + Y   K   
Sbjct: 171 LQMMKNHNTDYCVMEVTSQGLHMERVKGCNFKTAVFTNLTQDHLDYHGTFEEYKQVKGLL 230

Query: 231 --MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                 +     +  AI+ ADD   +   K               G  +  K +      
Sbjct: 231 FSRLGNDFSTTDKKIAILNADDPSVEYFKKVTSAEVITYGIHN--GADVQAKNITLSPKG 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            Q  +S    + +    L G F VYNAL A  + +   I    + + L  +  + GR E 
Sbjct: 289 IQFLVSTFNGEKEINLNLVGRFNVYNALAAITVALVEDIPLTNISDSLSHVKSIEGRMEI 348

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   ++   + VDYAHT ++LE +L  I   + G+II VFGCGGDRD  KR IMG+IA  
Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKIITVFGCGGDRDTKKRSIMGEIAGS 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNPRSEDP+ I  +I  G+       +  + +R  AI  AI M +  D+++
Sbjct: 408 YSDFVYITSDNPRSEDPQAIMKDIEKGLSQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       + +  R+ +
Sbjct: 468 IAGKGHETYQILKDST-IHFDNKEKARQAI 496


>gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 495

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 148/502 (29%), Positives = 231/502 (46%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          L+  P   ++ +I  +S D+R +  G +FVA+ G K DG L+I
Sbjct: 1   MKLWQLLAGV------PLTGEPYS-QDMEITSISYDTRTLLPGALFVALPGAKTDGSLYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A+GA A+V       +                + R+ L+L A   +G     +  +
Sbjct: 54  DEALAKGAAAVVCRRRPQREGV---------FFTTPDPRRALALLAENWFGHPGREMTLI 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS----TISSFAQDNRLTTPSPIYLAKALSY 176
             T       +         G    Q+G        +         TTP    + + L  
Sbjct: 105 GVTGTNGKTTTTFLIKEMLEGALKTQVGLIGTIQNMVGERVLPAHRTTPESYEVQQLLRE 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  G THV +E SSH L QHR++G+     +FTNL +DH+DYH T + Y +AK R    
Sbjct: 165 MADSGCTHVVMEVSSHALVQHRVEGLDFSVAAFTNLTQDHLDYHHTMEEYRSAKER---- 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L  +    +   D  +    +          S       +  K +     + +      
Sbjct: 221 -LFHQCRRAVLNLDDEAGRWYRERLACPVFTYSENKDQADLTAKGIRLYPGQVEFEAVAR 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +      P+PG F +YNAL A  + + +G+  +     L     V GR E V   +   
Sbjct: 280 EQIQRVFLPIPGGFTIYNALCALSVGLCLGLRLSECAAALRSARGVKGRVEVVPVPTA-Y 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH+ N+LE IL   R  T+GR+I +FGCGGDRD+ KRPIMG +  +LAD+A+VT
Sbjct: 339 TVLIDYAHSPNALENILLTARDFTAGRLICLFGCGGDRDRTKRPIMGDVVKELADLAVVT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDPE I  +I+ G+ G       + +R +AI  A+      DV+V+AGKGHET 
Sbjct: 399 SDNPRTEDPEDIIRDILAGMEGEGAQIHVEPDRRQAIAWALSQGRPGDVIVLAGKGHETY 458

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +  G +    + +I+ +   
Sbjct: 459 QEIQ-GVQYPMDEREIVAQYFS 479


>gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 499

 Score =  320 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 172/496 (34%), Positives = 249/496 (50%), Gaps = 21/496 (4%)

Query: 10  DFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +F +LIN L++       +  +  ++ DSR  Q G++FVAI G   DGH F+P A+ +GA
Sbjct: 2   NFRDLINHLNVLEHSPVLDVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTRGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            A+++     + +            VV +TRK L+L ASR YG+      ++ VTGT+GK
Sbjct: 62  AAVLLQQKVPVPE-------GVAWAVVPDTRKGLALAASRFYGEPGRALRLVGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    +  + +        IG     I       R TTP  + L + L  ++  GVT V
Sbjct: 115 TTTTHLIAALFRARRPGVGLIGTIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGVTDV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L   R+ G+   A  FTNL +DH+D+H   + YF AK +LF   L +E+ AI
Sbjct: 175 VLEVSSHALRLSRVHGLSFEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTG-LGEEAAAI 233

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD Y   ++      GCR+    +Q   +    V  +    +  +  E         
Sbjct: 234 INRDDPYGVRLLDLTR--GCRITYAVHQAADVRAAGVRPVPGGVEFLLESEWGSAPVALR 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYNAL AA + +  G     +   L ++  VPGRFE V        + +DYAHT
Sbjct: 292 LSGLFNVYNALAAACVGLVRGFTPEEIAGVLGRVRGVPGRFERVDQGQE-YTVIIDYAHT 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + LE +L+  R I  GR+I VFGCGGDRD+ KRP+MG I+   AD +++T DNPR+EDP
Sbjct: 351 PDGLENLLRAAREIAPGRLISVFGCGGDRDRTKRPLMGAISARGADYSVLTSDNPRTEDP 410

Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             I  +I  G       G+    +R EAIR A E     DV+++AGKGHE   I+     
Sbjct: 411 LAIIMDIEEGYRRVRPDGYAVVPDRREAIRHAFERARPGDVVIIAGKGHEDYQIIGTKRL 470

Query: 481 KMSVDCDIIREILGLI 496
           K   D      IL  +
Sbjct: 471 K-FDDRREAAAILAAM 485


>gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 504

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 146/503 (29%), Positives = 236/503 (46%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL++L+Y   P       +  +   + +I  +S DSR +  G +F A  G K DGH +I 
Sbjct: 13  KLKNLLYALEP-------LEVVGSVDCEITSISYDSRKVSEGSMFFAWKGQKTDGHCYIG 65

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           +AI + A AIV S     +     +      L V + R+ L   AS  YG   +++  + 
Sbjct: 66  EAIEKRARAIVCS-----EIPRLYVSQAVTFLKVRDPRRTLGKAASLYYGNPSQHLSLVG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ +   + + ++    +  IG     ++ +   +  T P    L   L  + 
Sbjct: 121 VTGTNGKTTTSFLTRYLLEKQNWKAGLIGTVCYDTTESCIPSSRTCPEGSDLQYMLYRMV 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G     VE SSH LDQ R++G     G +TN  +DH+DYH T + Y  +K      + 
Sbjct: 181 QAGCRAAVVEVSSHALDQGRIEGSNFRVGIYTNFTQDHLDYHLTMEEYRRSKENFIAYIR 240

Query: 239 ---PKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                +   ++  DD   + + +  R       V S G +   +    +       +  +
Sbjct: 241 GGKEGDGGVVLNLDDPQWRLLAEKLRKKMRIVTVSSEGRKEADLKAGSISCDRFSTKFVL 300

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              GK F     L G F V NAL++ G  + +GI     +  LE    VPGR E    + 
Sbjct: 301 EWAGKVFKVKSSLLGYFNVDNALLSLGGVLLLGIPLEQSISFLEFFPGVPGRMEKY-YSK 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  + +DYAH+ ++L  +L  ++     R+I+V GCGGDRD+ KRP M K+A + ADI 
Sbjct: 360 DGLLVVIDYAHSEDALSKLLHTLKCFQPKRLILVVGCGGDRDRLKRPRMAKVASENADIV 419

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             T DNPRSE PE+I  ++  G+          +R EAI+ A+ + +  D++ +AGKGHE
Sbjct: 420 FFTSDNPRSESPERIFDDMRAGVEESKKLHWIIDREEAIKQALCLADSTDIVCIAGKGHE 479

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G      D  ++++ L
Sbjct: 480 DYQEIG-GVFYPFSDRLVVQKHL 501


>gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 491

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 149/508 (29%), Positives = 229/508 (45%), Gaps = 31/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+                     +I++++ DSR ++ G +F+ I G   DGH F 
Sbjct: 1   MKLSELMEAIPV-------YTGEASSAIEIDQIAQDSRKVKPGTLFICIDGELVDGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GA AI+            T+    P++ V ++++ +++ A   YG   +   ++
Sbjct: 54  KRAEELGAVAIIAEK---------TVDVTVPVIYVRDSKRAMAMLADYFYGSPTQALKLV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRNM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK       
Sbjct: 165 LMNGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                      A+I  DDA S  +                         +    +     
Sbjct: 225 GNSYHTSNPKVAVINIDDAESSRMQTATAAHVITFGIKKQADF--RASNIKIASHGSTFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     +F     + G F VYN L A     A+ I     +  +E +  V GRFE V   
Sbjct: 283 LRTPVGNFTLKIKMIGNFSVYNVLAAIATSFALKIPINNAIATVEDIPGVKGRFELVSAG 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDY+HT +SL  +L+ I      R+ V+ GCGGDRD+GKRP M KIA+D A  
Sbjct: 343 Q-DFPVIVDYSHTPDSLLNVLQTIDEFAEKRVFVIVGCGGDRDKGKRPQMAKIAVDYATN 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I T DNPRSE+P  I  ++I G+P    ++   NR +AIR A+      DV+++AGKGH
Sbjct: 402 PIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENRRDAIRFAVNEAETGDVILIAGKGH 461

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLIL 497
           E   I+ + E     D    R  +   L
Sbjct: 462 EDYQIIGD-EVIDFDDRVEARIAIEKKL 488


>gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 482

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 160/470 (34%), Positives = 243/470 (51%), Gaps = 17/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR ++ G +FVA+ G+  DG LFIP A+++GA  IV        +      S  P 
Sbjct: 20  ICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVC-----RHNEVEYCGSAIP- 73

Query: 93  LVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +VVD+ R  L   A   Y  G     I+ VTGT+GK+++   ++ + +  G  +  IG  
Sbjct: 74  IVVDDPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRTGVIGTI 133

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +     F+++  LTTP  + L   L+ +       V +E SSH LDQ R+ GI      F
Sbjct: 134 AYRWPGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGISFKGVIF 193

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH+  + YF+AK RLF E   K    +   D+ + +++ K           
Sbjct: 194 TNLTQDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQWGRKLAKLVPEIIGFGFK 253

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGI 327
                   +L       ++  + + +  KD  +    PL G     N L    + + +G+
Sbjct: 254 NKPTQVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLAVQAISLQLGL 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                    EK   VPGR E +  N +   I+VDYAHT ++L  +L  +R +   RII V
Sbjct: 314 APEDFCC-FEKFTGVPGRLERI-VNKKQLDIFVDYAHTPDALINVLSALRDVGFKRIITV 371

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGG+RD+ KRP+MGK    L+D+A++T DNPR+EDPE I A+++ G+      I + +
Sbjct: 372 FGCGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVLPGLKKAKQIITEPD 431

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           R +AIR AIE+++  D L+VAGKGHE    +    K    D  +IR+ILG
Sbjct: 432 REKAIRQAIELVSPGDALLVAGKGHECTQQIGF-MKYPFSDQSVIRKILG 480


>gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
 gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
          Length = 494

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 160/492 (32%), Positives = 246/492 (50%), Gaps = 15/492 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L+  ++  P  + +  I+ + +DSR ++AG  FVA+ G +     +I QAI+ GA  
Sbjct: 6   LSTLLQGIAPVPSVF-DVTIHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGATV 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           I++ SA   + +         I+ V   R  L   A R +    + +  + VTGT+GK+S
Sbjct: 65  ILLESAQPDECYE---HEGVLIVPVTALRAHLGKIADRFFEHPSQRLRLIGVTGTNGKTS 121

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           V+ ++  + Q +G     IG     +    Q+   TTP  + + + LS + +QG    ++
Sbjct: 122 VSHYIATLLQETGTPCGVIGTLGYGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAAM 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L+Q R+D + +    FTNL RDH+DYH +  AY  AK RLF     +   A+I 
Sbjct: 182 EVSSHALEQGRVDNLTMTGAVFTNLTRDHLDYHGSMDAYGAAKARLF--HREELHFAVIN 239

Query: 248 ADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD + +++ ++      RV          + L +     +    ++      F+    +
Sbjct: 240 FDDPFGRQLYEKLDGKCDRVRYSLHEAQTELWLTEFAPSIDGFSASVDGLWGRFNVSARV 299

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L A    +++G+    V + +E+L   PGR E     S   R+ VDYAHT 
Sbjct: 300 LGSFNVSNILAAMASVLSLGVPVERVQQAVERLSPPPGRLEPFA-GSNDVRVVVDYAHTP 358

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   L  +R    GR+  VFGCGGDRD GKRP M + A   AD+ IVTDDNPRSEDP+
Sbjct: 359 DALNSALAALRPHVGGRLFCVFGCGGDRDTGKRPEMAREAERGADVVIVTDDNPRSEDPD 418

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I+ G           +R EAIR AI      D+++VAGKGHE    V  G++   
Sbjct: 419 AITSDIVAGFEHPEQIAVIHDRAEAIRQAIHSAVAGDIVLVAGKGHEAWQEVA-GQRFPF 477

Query: 484 VDCDIIREILGL 495
            D + +R  L L
Sbjct: 478 SDAEQVRHALSL 489


>gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 487

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 244/501 (48%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +              +N +  DSR +    +FVAI G + DGH FI +
Sbjct: 4   LKDILYKVTLESVTG-------NPNVPVNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A  QGA AI+               +    +   +T + L++ AS  Y    E   ++ +
Sbjct: 57  AEEQGAIAIICEQ------MPEDFVNGITYVQTSDTAQALAVMASNYYENPSENLKLVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++A+ + Q+  ++G  +  +      +         TTP  + + K L+ ++ 
Sbjct: 111 TGTNGKTTIATLLHQLFTKAGFKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAMMNE 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV +  +E SSHG+ Q R +G+    G FTNL  DH+DYH+T   Y + K   F + LP
Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKK-SFFDNLP 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K + A+   DD   + +++             +      + +           + ++  D
Sbjct: 230 KTAFALSNIDDKNGQVMLQNTRAKKVTYALKSFADYRAQILENQFTG------LLLKVND 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L        +G+     L++L +L  V GRF+    +++     
Sbjct: 284 QEVWVKLIGSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQ-YMISAKKITAI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I  I +     I V GCGGDRD+ KRP MGKIA  L+   + T 
Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVVGCGGDRDRTKRPKMGKIAAALSTKVVFTS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSEDP+ I  EI  G+        +   +R +AI+ A +M  + D++++AGKGHET 
Sbjct: 403 DNPRSEDPDTIIEEIEAGVEPVDYKKTVAITSRKQAIKAACQMAEENDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V NGE+    D  I++E+L
Sbjct: 463 QEV-NGERTDFDDFKIVKELL 482


>gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
 gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
          Length = 495

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 243/503 (48%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P               R + +++ DSR   +G +FVA+ G++ DG  FIP
Sbjct: 5   NLRDLLGPWVP-----------GAPARPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A+V  +     D         P++ +    + LS  A R Y +  E    + 
Sbjct: 54  QAIAQGVAAVVAEAEGEAADGEIREMHGVPVIYLAQLPQRLSALAGRFYQQPGEKQTLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q     G +S  +G               TT S + +   L+ L+
Sbjct: 114 VTGTNGKTTTTQLLAQWATLLGETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLA 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   Q+Y +AK  LF E  
Sbjct: 174 EKGASLTAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYESAKWLLFSEHQ 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AI+ ADD   +  + R  +A    +      G  G+++    V    N   +  S
Sbjct: 234 VGQ--AILNADDEVGRRWLARLPDAVAVTMENNLQPGCHGRWLKADAVEYHDNGAHIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +   PL G F V N ++A    +++    A ++    +L  V GR E      +
Sbjct: 292 SSWGNGEINSPLMGAFNVSNLMLALATLLSLDYPLATLINVAPQLQPVNGRMEVFSAAGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQYADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSEDP+ I  +I+ G+           R +A+   I      D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEDPQAIVNDILTGLLDPGRARLVSGRAQAVTNTIMQAQPDDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ N       D   +  +LG
Sbjct: 471 YQIIGNRRLDY-SDRATVAALLG 492


>gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
 gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
          Length = 484

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 249/504 (49%), Gaps = 34/504 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I   S        ++I+ ++ DSR I+ G IFVA+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDAS--------QEISGINMDSRLIEPGHIFVAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I    + I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F +
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD     + +                    + +              +
Sbjct: 226 GLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGAACLLGKKAEEVLLALSTLRPVAGRFDSLR-SPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGHVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +++R+I 
Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIF 481


>gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
 gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
          Length = 499

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 144/510 (28%), Positives = 230/510 (45%), Gaps = 40/510 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +     KI  +  DSR I  G +F+ + G   DG     
Sbjct: 9   KLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDR 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG     
Sbjct: 60  HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + 
Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRN 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  L
Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLL 230

Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F           +  A++ ADD   +   K               G  +  K +      
Sbjct: 231 FARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKG 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +S      +    L G F VYNAL A  + +  GI    + + L  L  + GR E 
Sbjct: 289 IRFLVSSFNGQIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI 348

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   ++   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA  
Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+++
Sbjct: 408 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       D +  R+ +
Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496


>gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 495

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 158/505 (31%), Positives = 241/505 (47%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +G +FVAI G+  DG  FIP
Sbjct: 5   NLRDLLAPWVP-----------GAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A++  +  +  D         P++ +    + LS  A R + +    +  + 
Sbjct: 54  QAIAQGVAAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +   +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A +FTNL RDH+DYH     Y +AK  LF E  
Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTEHQ 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AII ADD   +  +++  +A    +      G  G+++   KV        V  +
Sbjct: 234 VGQ--AIINADDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D      L G F V N LVA    +++    + +     +L  V GR E   +   
Sbjct: 292 SSWGDGHIDSRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPR E+P  I  +I+ G+           R +A+   +    + D+++VAGKGHE 
Sbjct: 411 ITDDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ +       D D +  +LG++
Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLGVL 494


>gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 499

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 149/496 (30%), Positives = 225/496 (45%), Gaps = 21/496 (4%)

Query: 9   KDFPELINQL------SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           K   EL+  L      S    Q  +  I+ +  DSR + +G +F  + G   DGH F   
Sbjct: 2   KKINELVEDLRSSGMVSAIVGQLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVA 61

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A+  GA A++             ++ + PI++  + R  L   AS  +    E+  ++ V
Sbjct: 62  AVKSGAAALLCE------HIPDGVKKDVPIILSSDARSALGAIASSFHDHPSESLSMVGV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GKS+    ++ I +  G        T    +   +   TTP    +   LS +   
Sbjct: 116 TGTNGKSTTTYMIRSIMRGRGKVGLLGTITYDDGTKEIEADRTTPEGSEIQAFLSEMVRS 175

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SSHGL Q RL G       FTNL  +H+D+H   + YF  K  LF + +  
Sbjct: 176 SCNGCVMETSSHGLAQGRLSGCLFDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYMKY 235

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I   DD Y K +++    +     S       +    +          +++EG+  
Sbjct: 236 NCKKIFNVDDPYGKRLLRECSGSDVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVN 295

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G + V NAL AA  C +IG     +   LE +  VPGR E      RG    V
Sbjct: 296 RVRLPLIGRYNVSNALAAAAACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGC-AIV 354

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++L  +L   R I  GR+I VFG GG+R +G R  MG+IA   AD  ++T DNP
Sbjct: 355 DYAHTPDALSNLLSAAREICKGRLIGVFGLGGERFRGNRWAMGEIAAQKADHLVLTMDNP 414

Query: 421 RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R EDP  I  +I+ G+       +    +R +AI  A++M  + DV+V++GKG E   ++
Sbjct: 415 RGEDPLSIVEDILEGVHKVDGNSYDVIIDRKDAIYRALDMSREGDVVVISGKGPENYILI 474

Query: 476 TNGEKKMSVDCDIIRE 491
             G+K    D + IR 
Sbjct: 475 K-GKKTPYSDSESIRN 489


>gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
 gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
          Length = 489

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 233/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+ +           +  +     I  +  DSRH+  G +F  + G   DGH F 
Sbjct: 1   MKLQTLLSRL-------PGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+ +GA AIV     S+      +          ++R+ +++ A   YG+    +  +
Sbjct: 54  EQAVERGAVAIVAERPLSVNVPVVVVP---------DSRRAMAILADAFYGQPTHRLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++Q+ +++G     IG     I   +     TTP  + L +    +
Sbjct: 105 GVTGTNGKTTTTHIIEQVARKAGKKIGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             +GV  V++E SSH L Q R+ G       FTNL +DH+DYH T + Y NA      +L
Sbjct: 165 VDEGVEFVTMEVSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 +     +   D    +  K    A      +  +   +  +++          +
Sbjct: 225 GNRYDERRPKFAVLNHDDPVSQYYKHMTAAPIITYGIKEKSDVM-AEQIEMTPGGMAFQL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G F VYN L A   C+A G   A + E L  +  VPGRFE V    
Sbjct: 284 CTPHGTMAIETKLVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGRFETV-DEG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +S+E  LK +R      + VV GCGGDRD+ KRP+M + A+  AD+A
Sbjct: 343 QNFTVIVDYAHTPDSVENALKTVRQFAKRNVYVVIGCGGDRDRTKRPLMAQAAVRYADVA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + T DNPRSEDP +I  ++  G+      ++   +R EAIR AI    + DV+++AGKGH
Sbjct: 403 VFTSDNPRSEDPRQILRDMEAGVSAGDGTYVTIPDREEAIRYAIGQAQEGDVVLIAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET  I+ + +     D  + R  
Sbjct: 463 ETYQIIGD-DVIDFDDRAVARAA 484


>gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 499

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 144/510 (28%), Positives = 232/510 (45%), Gaps = 40/510 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +     KI  +  DSR I  G +F+ + G   DG     
Sbjct: 9   KLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDR 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG     
Sbjct: 60  HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + 
Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRN 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH+T   Y + K  L
Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVKSLL 230

Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F           +  A++ ADD   +   K               G  +  K +      
Sbjct: 231 FARLGNDLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKG 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E 
Sbjct: 289 IRFLVSSFNGEIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI 348

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   ++   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA  
Sbjct: 349 I-DENQDFLVIVDYAHTPDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M +  D+++
Sbjct: 408 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       D +  R+ +
Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496


>gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 484

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 229/494 (46%), Positives = 310/494 (62%), Gaps = 16/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL           L +  +   + ++  +SSDSR ++AG +F A+ G K DG ++ 
Sbjct: 1   MKLRDL--------AGILPVEGIASVDLEVTGISSDSRQVKAGVVFFALAGTKADGAVYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A   ++A      S       P+L VD+ R  L+  A+R +GK PE ++AV
Sbjct: 53  ED------AAARGAAAIVAGKGSTIAGLPVPVLAVDDPRLALAQSAARYFGKQPEIMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +++G ++  IG T  ++    D   LTTP P+ L + L  L+ 
Sbjct: 107 TGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNDYGSLTTPDPVALHQLLQELAD 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ LLP
Sbjct: 167 AGVTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTIEDYHRAKLRLFDTLLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S      A  AG  VL+VG  G F+ LK+V    ++Q+  +  +G  
Sbjct: 227 KGAPAVIFADDPWSAPTTVAAKAAGLNVLTVGRHGDFLRLKRVEHERHRQRAEVEADGVL 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQ+ NALV+AGL I+ G   A  L  LEKL   PGR + VGT   G  +Y
Sbjct: 287 YEIDLPLAGDFQISNALVSAGLAISTGTPVAKALMALEKLKGAPGRLDLVGTTGNGAPVY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR+IVVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPDALENVLASVRPFTTGRVIVVFGCGGDRDRGKRPIMGEIATRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE    + + E
Sbjct: 407 PRSEVPETIRAAILAAAPGAIEIGDRRQAIHEAVAMLHAGDTLIVAGKGHEEGQTIGS-E 465

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 466 TLHFSDHEEVRAAL 479


>gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
 gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
          Length = 489

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 206/494 (41%), Positives = 289/494 (58%), Gaps = 12/494 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++               P       I  +++DSR I+ G++F A+ G   DG  F 
Sbjct: 1   MLLSNVAAGQI---------VPAAGSTVSITGLTADSRAIKPGFLFAALKGTHVDGADFA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A++     + +  +  +  +  +   DN R+  +L A+R +G  PE ++AV
Sbjct: 52  AKAVGAGAVAVLCERDAADR-LAQELSKDVVLWPSDNPRRDFALMAARFHGAQPEVMVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA FV+QI Q +G +S  +G   T+++  Q    LTTP P+ L   L+ LS 
Sbjct: 111 TGTSGKTSVAHFVRQIFQAAGHASASLGTIGTVTADGQSYGGLTTPDPVSLHAELARLSK 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH ++EASSHGLDQHRLDG++L+A  FTNLGRDH+DYH T + Y  AK+RLF +LL 
Sbjct: 171 EGITHTALEASSHGLDQHRLDGVRLVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLL 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +P ++   + Y+  V+  A   G  V SVG  G+ I L K+      Q++ +   G+ 
Sbjct: 231 KGAPVVVEPSEPYADRVIAVAQERGLPVFSVGEAGENIRLAKLTPTAGGQELVVEAGGQT 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              L PL G FQV NALVAAGLCI  G+     +  L +L   PGR EF G +  GG +Y
Sbjct: 291 TTVLLPLIGRFQVSNALVAAGLCICAGVAPDEAIAALAELKGAPGRLEFAGRSQTGGTVY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAH  ++LE  L  +R   SG++ VV G GGDRD GKR IMG+++   AD+ IVTDDN
Sbjct: 351 IDYAHKPDALENALAALRPFASGQLSVVIGAGGDRDPGKREIMGRVSQVGADLVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR+EDP  IR  ++ G PG +E G+R EAIR  +  L   D+L VAGKGHET  I+    
Sbjct: 411 PRTEDPATIRKAVLSGAPGALEIGDRREAIREGVRRLKSGDILCVAGKGHETGQIIG-QT 469

Query: 480 KKMSVDCDIIREIL 493
                D + + E L
Sbjct: 470 VHPFSDHEAVAEAL 483


>gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halanaerobium praevalens DSM 2228]
          Length = 486

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 146/500 (29%), Positives = 243/500 (48%), Gaps = 25/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  ++     E+            +++I+E+  DSR I+ G +F+AI G K DGH +I
Sbjct: 1   MQLNKILKNINYEI-------KAGNIKKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
            QAI  GA AI++     +         +   L V+N+R+ +S+ A   +        ++
Sbjct: 54  SQAIENGATAIIIEKELEV------YEKDITYLKVENSRQVMSILAKNFFDNPLKEIKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  + +I Q+    +   G   + I S    +  TTP  + L +  + +
Sbjct: 108 GITGTNGKTTTAYLLYKILQKYAGQAALFGTISNIIGSETLSSNRTTPESLDLYRYFAQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G+ +  +E SSH LD +R++ I   A  FTNL  +H+DYHQ+   Y           
Sbjct: 168 KKKGIKYGVMEVSSHALDLYRVESIDFEAAIFTNLSPEHLDYHQSLDNYR-EVKSRLFSQ 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L     AII ADD  S+ + K++                   +        +  T     
Sbjct: 227 LKPNKYAIINADDPNSEYIKKKSEAQNLSYSLDTKSADLYTTEFKLKQTGLEYKTGGKLV 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +F     L G F +YN+L      + +GI+  ++ + L     VPGRFE +       +
Sbjct: 287 ANF--KLNLGGLFNIYNSLAVVLTALVLGIEKNIIKKALADFDSVPGRFEIIDQGQ-KFQ 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +++E ILK    I   ++I++FGCGGDRD+ KRP+M  +A   AD  I+++
Sbjct: 344 LIVDYAHTPDAMENILKAALNIKKNKLIILFGCGGDRDRSKRPLMAALAEKYADSIIISN 403

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPRSE P KI  EI  G       +    +R + I+ AIE+  K D++++ G+GHE   
Sbjct: 404 DNPRSESPTKIFKEIEKGFSSNFTNYSIIPDRKKGIKAAIELAKKDDLVLLLGRGHEKYQ 463

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           ++   + ++  D  +  + L
Sbjct: 464 VIKERKIEL-DDRQVAIQAL 482


>gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
 gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
          Length = 489

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 161/502 (32%), Positives = 240/502 (47%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+++L+    P              ++ I  +  DSR +  G +F  I G   DGH + 
Sbjct: 2   MKIRELLDHISP-------CRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA  +GA A +             +  +   L+V ++R+ ++  A+R Y    + +  +
Sbjct: 55  AQAADRGAVAFLTEEE---------LPVDGTQLIVRDSRRAMAQLAARFYNYPSDRMTMI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV  F+Q + +R+G  +  IG   T     Q +   TTP    L K L+ +
Sbjct: 106 GVTGTNGKTSVTHFIQDLLKRAGTEAGMIGTMYTELKGIQTETVNTTPESFTLQKRLNEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
              G   V++E SSH L   R+ G       FTNL +DH+DYHQT   Y  AK  LF + 
Sbjct: 166 YLAGAEAVTMEVSSHALHLGRVHGTAFDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQL 225

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                      A+I  DD+Y+  ++  +            +   +  + +       + T
Sbjct: 226 GSGGETDAYKRAVINVDDSYADIMLGASAVPVITYGI--EKPCDVRAEDLEVSPEGIRFT 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I +  + +     L G F VYNAL A     AIGI+       L +L  V GRFE V   
Sbjct: 284 IRLNQQSYPVQLKLAGTFSVYNALAAFAAVYAIGIEPEQAARFLSELPQVRGRFERV-ET 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT + LE +++  +  T   + VVFGCGGDRD+ KRP+MGK+A DLAD 
Sbjct: 343 DAPFHVIVDYAHTPDGLENVIRTAKETTDRPVTVVFGCGGDRDRKKRPLMGKLAEDLADH 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I+T DNPRSE+PE I  +I+ G+       + +R  AI  AI    + +V+V+AGKGHE
Sbjct: 403 VILTSDNPRSENPEAIIQDILSGMSKDNHTVQTDRKAAITHAIMNATEGEVIVIAGKGHE 462

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T  I  +       D  +  E 
Sbjct: 463 TYQITGDVTLD-FDDRKVSLEA 483


>gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 488

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 147/493 (29%), Positives = 233/493 (47%), Gaps = 16/493 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++  D  + +    +   ++ + K+  V+ D+R +  G +F+AIVG   DGH FIPQAIA
Sbjct: 1   MLASDLIQALKYKRLSQSEFTDFKVTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
           +GA+ I+               +  P++ V +T + ++  A + YG   +   ++ VTGT
Sbjct: 61  KGAQMIIAQEPVE---------TTVPVVYVKDTHRAMAFLADKFYGSPSQSMKMIGVTGT 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V   ++++    G  +  IG      +        TTP  +   K L+ +    V
Sbjct: 112 NGKTTVTHLIEEVFHDLGEGTGLIGTLYRKVNDQVYPTTNTTPDVLTNQKTLAEMRDANV 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             VS+E SS  L Q R+ GI      FTN   DH+ YH+T   Y  AK  LF ++    S
Sbjct: 172 KTVSMEVSSIALVQGRVWGINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFS 231

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 +           +     +         I+   +    +  +  + V  +    
Sbjct: 232 GKTAVMNIDDPVGREFIDYTTSNILTYGIKHQADIYADHIKITIHGTEFDLHVFDEVKHV 291

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L GEF VYN+L A G   A G   A +++ L ++  V GRF+ V +N+ G  + VDY
Sbjct: 292 KTHLIGEFNVYNSLAAVGAAYAAGASVAEIVDSLSRVKGVKGRFQLVPSNT-GVSVIVDY 350

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + L  +L+ +          + GCGGDRD  KRP M KIA+D +  AI+T+DNPR+
Sbjct: 351 AHTPDGLLNVLETLNDFAEQDTYCIVGCGGDRDAQKRPQMAKIAVDNSTHAILTEDNPRT 410

Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           EDP KI  +++ GI         NR EAI+ A+      D +++AGKGHE   I+    K
Sbjct: 411 EDPHKIMDDMLAGIDSDQATVIFNRREAIQYAVNRAKPGDAIIIAGKGHEDYQIIG-KTK 469

Query: 481 KMSVDCDIIREIL 493
               D +   + L
Sbjct: 470 HHFDDYEEAEKAL 482


>gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 523

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 151/502 (30%), Positives = 241/502 (48%), Gaps = 22/502 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L+ K+F +L+           + +I+ ++ DSR +  G +F A+ G K DG+ F+ 
Sbjct: 31  KLSSLLGKEFEKLLKG-------QPDPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVD 83

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           +AI++GA A++ S A   +       +    L VDN R  L+  +   Y    ++  ++ 
Sbjct: 84  EAISRGAVAVISSQARRFR------SAKVAYLTVDNPRLVLAAVSRAFYDHPDKDLSLVG 137

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT+GK++VA  V+QI    G     +G            +  TTP    L   LS + 
Sbjct: 138 ITGTNGKTTVAYLVKQILANLGQRYGCLGTVGYDLVRRTVPSFRTTPESHDLCGLLSQMR 197

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E SSHG+DQ R+ G+    G+F NL RDH+DYHQ  ++Y+  K R F    
Sbjct: 198 DFECRGAVMEVSSHGIDQFRVSGLGFEVGAFLNLTRDHLDYHQDMESYYAVKRRFFNGES 257

Query: 239 PK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  DD Y K ++         +     +G      ++       +   +   
Sbjct: 258 GPLPKVAVVNIDDPYGKRLVSEIPEQVAILTFGETEGAAFRASEIELSSEGSEFRFTTPL 317

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            DF     L G++ V N L A  +C  +G++    +E L+    +PGR + V        
Sbjct: 318 GDFAVKTSLVGDYNVSNTLAALTICSGLGLNIENCIEDLDSFPGIPGRMQKVEAGQA-AT 376

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L+  L  ++ +T G++ VVFGCGG+RD+GKRP M K+A  LAD A  T 
Sbjct: 377 VLVDYAHTEDALQNALSMLQGVTVGKLRVVFGCGGNRDRGKRPAMTKVANTLADEAWATS 436

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E  E I A++  G+          +R  AI  A+E  +  D L++AGKGHE+   
Sbjct: 437 DNPRNEQVEDIFADMKEGLVDPERVHFVPDRRRAIELALEASHAGDCLLIAGKGHESFQE 496

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
                     D  +  E++  +
Sbjct: 497 YGE-TVVPFDDRKVAIELIENM 517


>gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
 gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
          Length = 505

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 163/522 (31%), Positives = 250/522 (47%), Gaps = 46/522 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+       +             +I  +  DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRQLLACLTAPKVTGDDA-------AEITSLCYDSRQVRPGALFFALRGVKSDGTEFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  GA A+V     ++        +    + V + R+ +SL A+  YG       ++
Sbjct: 54  ESAVKGGAVAVVADRPCAV--------AGVTCIEVPDPRRAMSLMAALFYGVPTAGIPLV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I +++G+ +  +G  S    + +     TTP  + L + L  L
Sbjct: 106 GITGTNGKTTTTYLMEGIMEQAGIPTAVLGTISYRFGATSIPAPNTTPESVDLQQILRDL 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG     +E SSH L+Q R DG       FTNL RDH+DYH   ++Y+ +K+RLF +L
Sbjct: 166 VDQGAKGAVMEVSSHSLEQRRADGCLFDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDL 225

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L          A++  DD Y   +   A        + G       + +V    +  +  
Sbjct: 226 LAPTGEKPLRRAVVNLDDPYGARIAAEAAAPVLTYAAAGPADLT--VAEVEFSVHGIRCR 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++    + D    L G F +YN L A G  +A+GI    +   +     VPGR E V  N
Sbjct: 284 LNSPVGEIDIDSDLLGRFNLYNILGAVGAGLALGIPKDAIEAGIAGHKKVPGRLERVP-N 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +G  + VDYAHT ++LE +L  I  + + RII +FGCGGDRD+GKRP+MG+IA   +D+
Sbjct: 343 DQGIIVLVDYAHTGDALENVLSTIAELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSDL 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453
           AIVT DNPR+E+P+ I  +I  GI                    GF    +R  A+R AI
Sbjct: 403 AIVTSDNPRTEEPKAILDDIRAGITPLRLKEYSLEELEGGLREKGFATIESRRTAVRAAI 462

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                 D++++AGKGHE   IV   EK    D +     L L
Sbjct: 463 MAARPGDIVLLAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503


>gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
 gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
          Length = 495

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 156/496 (31%), Positives = 241/496 (48%), Gaps = 13/496 (2%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K    L +         R+ ++ E+  DSR    G +FVAI G++ DG  FI QAI  GA
Sbjct: 2   KKLTALWDIDEQLDSVHRDIELQEMILDSRLANTGCLFVAIKGHRVDGREFIMQAIQNGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A++  +    Q  + +   N P++      K LS  A R Y    + +  + VTGT+GK
Sbjct: 62  SAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++A  + Q  Q  G +S  +G          ++   TT S I +  +L     QG    
Sbjct: 122 TTIAQLLAQWTQILGHTSAVMGTIGNGLFGQIKEASNTTGSAIEIQSSLDKFIRQGADFA 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSHGL QHR++ +   AG FTNL RDH+DYH T + Y  AK RLF EL  +     
Sbjct: 182 AIEVSSHGLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNCQHKILN 241

Query: 246 IYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  +   +  +     +       CR         ++    +        +  +    + 
Sbjct: 242 VDDEIGATWLIELSKDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFASSWGNG 301

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G F V N L+     +++G D   +L  + +L  V GR E + +      + V
Sbjct: 302 ILSSPLIGGFNVSNLLLVLATLLSLGYDIGKLLATVRQLTGVCGRMEML-SAKHKATVIV 360

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L++      G++  +FGCGGDRD+GKRP+M  IA   AD  IVTDDNP
Sbjct: 361 DYAHTPDALENALQSAAVHCQGKLWCIFGCGGDRDRGKRPLMAAIAEKFADSVIVTDDNP 420

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R+E+PE+I  +I+ G            R +AI+TA++   + DV+++AGKGHE   I+  
Sbjct: 421 RTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSAVENDVVLIAGKGHENYQIIGT 480

Query: 478 GEKKMSVDCDIIREIL 493
             K    D +I+++  
Sbjct: 481 -TKYHFSDQEIVKKYF 495


>gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
 gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
          Length = 495

 Score =  319 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 157/505 (31%), Positives = 241/505 (47%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +G +FVAI G+  DG  FIP
Sbjct: 5   NLRDLLAPWVP-----------GAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  A++  +  +  D         P++ +    + LS  A R + +      ++ 
Sbjct: 54  QAIAQGVAAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +   +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A +FTNL RDH+DYH     Y +AK  LF E  
Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTEHQ 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AII ADD   +  +++  +A    +      G  G+++   KV        V  +
Sbjct: 234 VGQ--AIINADDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D      L G F V N LVA    +++    + +     +L  V GR E   +   
Sbjct: 292 SSWGDGHIDSRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T+DNPR E+P  I  +I+ G+           R +A+   +    + D+++VAGKGHE 
Sbjct: 411 ITNDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ +       D D +  +LG++
Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLGVL 494


>gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
 gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
          Length = 534

 Score =  319 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 160/530 (30%), Positives = 242/530 (45%), Gaps = 39/530 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-----KINEVSSDSRHIQAGWIFVAIVGNKED 55
           M L+DL+       +      P    +       +  +S++S+ I+ G +F+ + G + D
Sbjct: 8   MLLRDLLTGLEASELEDFK-LPEAIADHSHWTKAVTGLSTNSQAIEPGMVFIGMPGTRVD 66

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F   AI +GA A +VS +      +    S+  +L   N  K  +  A+  Y +  +
Sbjct: 67  GGEFWQSAIEKGAIAALVSPSVLASKPNT---SDALVLTTSNIAKVCAELAASFYAQPAK 123

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
             NI+ VTGT+GK++    ++     +   +  +G        + +    TTP  I L  
Sbjct: 124 AMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTLYTRWPGYEKIAVHTTPFSIDLQA 183

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+         V +E SSH L QHR   I      FTNL +DH+DYH+    YF AK  
Sbjct: 184 ELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAVFTNLTQDHLDYHKDLDDYFEAKAL 243

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF     K   AI+   D Y +++++R          +  +   ++   +         T
Sbjct: 244 LFSPDYLKGH-AIVNQKDPYGQKLIERIGKHKTLTYDITDRSADLYTSDLRYSPIGVSGT 302

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I     +  F  PL G+F + N L A G  + +G+    ++  L +   VPGR E V  +
Sbjct: 303 IHTPAGNASFSSPLVGQFNLENLLAAVGAALHLGVSLDQIVVALPEFKGVPGRMERVQIS 362

Query: 353 S---------------------RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +                     +   + VDYAHT +SLE  LK  R    GR+I VFGCG
Sbjct: 363 TGMAAQAVVELDTVAEPDTVAEQDISVIVDYAHTPDSLENALKAARPFIEGRLICVFGCG 422

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI----EKGNRIE 447
           GDRD+ KRP MG+IA + +D  IVT DNPR+E PE+I  +++ GI G +      G+R  
Sbjct: 423 GDRDRSKRPKMGRIAYEQSDFVIVTSDNPRTESPEQILEDVVAGIEGPLDEEQVIGDRAA 482

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           AIR+AI      D +V+AGKGHE   I+   EK    D +  R  L   L
Sbjct: 483 AIRSAILNAQPGDGIVIAGKGHEDYQILGT-EKIHFDDREHARAALEERL 531


>gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
          Length = 489

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 158/494 (31%), Positives = 241/494 (48%), Gaps = 16/494 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E +  + +         +  V  DSR + AG +FVA+ G   DG+ FI  AIA GA A
Sbjct: 3   IDEALAGIDVLERGSGSADVTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGARA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           IV  S  +     A      P  +V N R+ L+  A+ ++G       I AVTGT+GK++
Sbjct: 63  IVTDSREAWAAGGA-----VPFYLVGNGRRALAGVAANVFGHPEHVLKISAVTGTNGKTT 117

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  ++Q+ +        IG   T      + +  TTP    L    +     G T   +
Sbjct: 118 TAFLLEQMLKSVNRKCLLIGTIETHIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVM 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R+ G+ +    FTNL +DH+DYH T + YF AK RLFE +  +     + 
Sbjct: 178 EMSSHALAQERVWGVPVDVAMFTNLTQDHLDYHGTMERYFQAKARLFEGVGAEAPRVAVV 237

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D+ +   +    + G  V+S G         KV     + Q              PL 
Sbjct: 238 NEDSPAGVWL-LTRDLGPEVMSYGINAGEFRASKVALSAGRTQFLWETPYGAVQIDSPLT 296

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  VYN L A+   +  G+    + +  + LH VPGRF+ V  N  G  + VDYAHT +
Sbjct: 297 GKVNVYNLLAASCAAMGRGLTLEEIAKAAQGLHQVPGRFQTVP-NDLGITVVVDYAHTDD 355

Query: 368 SLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +L  ++   R +   GR+I +FGCGGDRD+ KRP MG+ A + +D+ ++T+DNPR+E+P 
Sbjct: 356 ALRNLIGLARELVGKGRVITLFGCGGDRDKTKRPKMGRAAGEGSDLVVLTNDNPRTEEPG 415

Query: 427 KIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  E + G+       + + +R  AI  AI+ +   D++++AGKGHE V I+  G    
Sbjct: 416 AILDEALAGVRETSVECVVEPDRATAIALAIKAVKGGDIVLLAGKGHEKVQILKTGTV-P 474

Query: 483 SVDCDIIREILGLI 496
             D ++   +L  I
Sbjct: 475 FDDAEVAARVLREI 488


>gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 487

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 158/485 (32%), Positives = 242/485 (49%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPLTDVPLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q    TTP+PI +   L+ L + G   V++E SS
Sbjct: 119 VAQALDLLGQRCGLVGTLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T +AY  AK +LF     +     +  DD 
Sbjct: 179 HGLDQGRVAALAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWNDLRCRVINL--DDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++    H +     S+     +++ ++     +  + T+     +      L G F 
Sbjct: 237 FGRQLAADKHESRLITYSLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L  L KL    GR + +G  ++   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAVGALLGLEYALDEILAVLPKLEGPAGRMQRLGGGTQPL-VVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +R    GR++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPRSEDP +I  +
Sbjct: 356 VLLALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQIFDD 415

Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G            R  AI   I   +  DV+V+AGKGHE    + NG++    D   
Sbjct: 416 IRAGFSAAEKVEFVAGRGLAIARLIASASADDVVVLAGKGHEDYQEI-NGQRHDFSDLAE 474

Query: 489 IREIL 493
             + L
Sbjct: 475 ADKAL 479


>gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
 gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
          Length = 488

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 156/502 (31%), Positives = 236/502 (47%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+        +  S  P+      I  +  DSR ++ G +FV I G   DGH F 
Sbjct: 1   MKLQTLLQ-------HLHSFTPLATENPTITSIEMDSREVKQGSLFVCIKGFTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            Q          V+           +    P++ V+++R+ L++ A   YG+     +++
Sbjct: 54  EQ---------AVARGAVAVVAEKPLALPVPVIYVNDSRRALAVLADAFYGQPTHQLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    +++IC+ +G  +  IG  +  I     D + TTP  + L      +
Sbjct: 105 GVTGTNGKTTTTHLIERICRHAGKKTGLIGTINMKIGDDTYDVKNTTPESLVLQNMFRKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
               V  V++E SSH L   R+ G       FTNL +DH+DYH+T + Y  +K       
Sbjct: 165 VDAHVDIVAMEVSSHALHMGRVHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +   AI+ ADDA S+E  K                     K++    +     
Sbjct: 225 GNRFDHQRPKFAILNADDAASEEYKKSTAATVVTYGIHHKSDIM--AKQIEITTSGTTFQ 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +       L G F VYN L A   C+   I  + ++E +  +  VPGRFE V   
Sbjct: 283 LITPIETVQVKTKLIGMFNVYNLLAAVAACLVSNIPLSTIVEAIADIEGVPGRFEVVDAG 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT +SLE +L+ IR     R+ VV GCGGDRD+ KRP+M +IA+  +D+
Sbjct: 343 Q-PFTVIVDYAHTPDSLENVLQTIRQFAKKRVFVVVGCGGDRDRTKRPLMAQIAVKYSDV 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            I T DNPRSEDP  I  ++  G+    +   +R EAI  AIE   K D++++AGKGHET
Sbjct: 402 PIFTSDNPRSEDPLVILNDMKQGVAEDVVCIVDRKEAITYAIEQAEKDDIILIAGKGHET 461

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   +     D  + RE +
Sbjct: 462 YQIIG-KDVFHFDDRVVAREAI 482


>gi|322834425|ref|YP_004214452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
 gi|321169626|gb|ADW75325.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
          Length = 495

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 166/495 (33%), Positives = 239/495 (48%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ +        + ++  DSR   AG +FVA+ G+  DG  FIPQAIAQG  A+
Sbjct: 4   RNLRDILAPWVSDAPAVALKDMILDSRVAAAGDLFVAVSGHTSDGRRFIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +    Q  +       P++ +++    LS  A R Y +  +   ++ VTGT+GK++ 
Sbjct: 64  VAEAKGEQQHGTVCQMHGVPVVYLEDLNILLSELAGRFYQQPGKELRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G               TT S + +   L+ L   G T  ++E
Sbjct: 124 TQLLAQWSQLLGETSAVMGTVGNGLLDNVIPAENTTGSAVQVQHILADLVKLGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+  +   A +FTNL RDH+DYH   Q+Y +AK +LF      +      A
Sbjct: 184 VSSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMQSYEDAKWQLFASHQVGQKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD      + +  NA    +      G+ G+++  + V    N   V I     +     
Sbjct: 242 DDEVGARWLAKTPNAIAVSMEDKIPAGWSGRWLVARSVNYHDNGATVNIDSSWGEGKLES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++    A +L    +L  V GR E            VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLDYPLAQLLATASQLQPVCGRMEVF-NAPGKPTAVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G +  VFGCGGDRD+GKRP+MG IA   AD  IVTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCRGTLWCVFGCGGDRDKGKRPLMGAIAEQYADRVIVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I A+I+ G+       E   R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PRAIVADILAGLLDAGRVQEIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNQRLD 480

Query: 482 MSVDCDIIREILGLI 496
              D   +  +LG+I
Sbjct: 481 Y-SDRVTVARLLGVI 494


>gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
          Length = 495

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 239/495 (48%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ + +   ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G               TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       A
Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A    +      G+ G ++   +V    N   +       +     
Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++G     +L     L  V GR E          + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLGYPLTQLLAAASHLQPVCGRMEVF-NAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI      DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
              D   +  +LG++
Sbjct: 481 Y-SDRVTVARLLGVV 494


>gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Rickettsia typhi]
          Length = 492

 Score =  319 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 158/483 (32%), Positives = 247/483 (51%), Gaps = 23/483 (4%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
                ++  KIN +S++S+ ++   +F A+ G   DG+ FI  A+  GA  ++  +  + 
Sbjct: 4   NLNQLFKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITENKKNT 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                       ++ V++  + L       Y K P+N+++VTGT+GKSSV S++ Q    
Sbjct: 64  VIDK--------VIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFL 115

Query: 140 SGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
               +  IG          +       LTT   +   K    L+   + +++ EASSHGL
Sbjct: 116 LRKKAAFIGTIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGL 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL   K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI+ +D    +
Sbjct: 176 EQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIE 235

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V     N   + ++VG +G    + K+      Q +        ++    + G FQ  N
Sbjct: 236 FVKDYLRNNNVKFITVGKKGDV-QITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AA      G     ++E L K+  V GR E       G  I+VDY+HT ++LE  L 
Sbjct: 295 LLIAALTLYYTGFKFDEIIEALSKVKPVKGRMER----IDGTNIFVDYSHTPDALEKALI 350

Query: 375 NIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            ++ I    G++ V+FGCGGDRD+ KR +MGKIA   AD  I+TDDNPR EDP+ IR EI
Sbjct: 351 ELQNIKPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEI 410

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           I GI    + E  +R EAI+  I  L + D+L++AGKGHE   IV + +K    D +++R
Sbjct: 411 IRGIGTATYTEIESREEAIKYGINNLKQDDILLIAGKGHENYQIVGD-KKLPFDDSEVVR 469

Query: 491 EIL 493
           + L
Sbjct: 470 KYL 472


>gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 494

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 151/511 (29%), Positives = 235/511 (45%), Gaps = 37/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L       +I           + +I  + +DSR ++ G +F+ + G+  DGH F 
Sbjct: 1   MNLKQLSSVLAAAVIEGSG-------DVEITGIETDSRQVKPGDLFICLPGHTVDGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA  +GA A+VV     +         + P ++V ++R  ++  A+  Y +      ++
Sbjct: 54  AQAAGKGAAALVVERKLEV---------DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I    GL +  IG         +     TTP  + L + L+ +
Sbjct: 105 GVTGTNGKTTTTYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G     +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK   F  L
Sbjct: 165 ANAGTECCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRL 224

Query: 238 LPKE-------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                        A++ ADD  S    K+                      +        
Sbjct: 225 GNAFAKDESARKYAVLNADDDASAYFAKQTAAEVITYGLGEDADV--RASNISITAQGTS 282

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +       D    + G+F VYNA+ A    +  G+    +   LE +  V GR E V 
Sbjct: 283 FHVDTFRGSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVV- 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + LE +L+ +     GR++ VFGCGGDRD+ KRPIMGKIA   +
Sbjct: 342 DEGQPYAVIVDYAHTPDGLENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYS 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+  VT DNPR+EDPE I  +I  G+         +    +R +AI  AIEM +  DV++
Sbjct: 402 DVVFVTSDNPRTEDPELILKDIEAGLVEDGVATESYKLIVDRRKAIEKAIEMASPGDVVL 461

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AGKGHET  ++  GE     D  + ++ + 
Sbjct: 462 IAGKGHETYQLIA-GEVLDFDDRIVAKDAIR 491


>gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
 gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
          Length = 495

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 160/498 (32%), Positives = 250/498 (50%), Gaps = 16/498 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +LI          L +         I+ +  DSR I++G  FVAI G+  DG  FI +
Sbjct: 7   LSELIAPW-------LELADTDLASLAISRLELDSRQIKSGETFVAIQGHAVDGRQFIDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIAQGA  ++  +           R   P++ +    + LS  A RLYG H   ++  TG
Sbjct: 60  AIAQGANIVLAEADAHHVHGQVEFREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGATG 119

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+ +G
Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 179

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T  AY  AK  LF E     
Sbjct: 180 AQYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHA--C 237

Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AII  DDA   + +K+  H  G  +L+     + I  ++V    +   +       + 
Sbjct: 238 QRAIINVDDAVGAQWVKQLPHAIGISLLAQPNTAQAIWARQVQYAESGITLDFDSSWGEG 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL GEF   N L+A    +++G + + +L    +L  V GR E      +     V
Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKM-VV 356

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L+ +R   +G++  +FGCGGDRD+GKRP+M  IA   AD  I+TDDNP
Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIFGCGGDRDRGKRPMMAAIAEQYADRVILTDDNP 416

Query: 421 RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE P+ I A+++ G+        + NR +A   A++    QD++++AGKGHE   ++ N
Sbjct: 417 RSESPQAIVADMLAGLTHPELAHIEHNRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476

Query: 478 GEKKMSVDCDIIREILGL 495
                  D +  +++L L
Sbjct: 477 ETIHY-SDRETAQQLLEL 493


>gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 494

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 152/511 (29%), Positives = 236/511 (46%), Gaps = 37/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L       +I           + +I  + +DSR ++ G +F+ + G+  DGH F 
Sbjct: 1   MNLKQLSSVLAAAVIEGSG-------DVEITGIETDSRQVKPGDLFICLPGHTVDGHEFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA  +GA A+VV     +         + P ++V ++R  ++  A+  Y +      ++
Sbjct: 54  AQAADKGAAALVVERKLEV---------DLPQVIVKDSRFAMAGLANAFYHQPSSRMKMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I    GL +  IG         +     TTP  + L + L+ +
Sbjct: 105 GVTGTNGKTTTTYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G     +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK   F  L
Sbjct: 165 ANAGTECCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRL 224

Query: 238 LPKE-------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                        A++ ADD  S    K+                      +        
Sbjct: 225 GNAFAKDESARKYAVLNADDDASAYFAKQTAAEVITYGLGEDADV--RASNISITAQGTS 282

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +       D    + G+F VYNA+ A    +  G+    +   LE +  V GR E V 
Sbjct: 283 FHVDTFRGSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVV- 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + LE +L+ +     GR+I VFGCGGDRD+ KRPIMGKIA   +
Sbjct: 342 DEGQPYAVIVDYAHTPDGLENVLRTVNEFAEGRVITVFGCGGDRDRTKRPIMGKIAAKYS 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+ +VT DNPR+EDPE I  +I  G+         +    +R +AI  AIEM +  DV++
Sbjct: 402 DVVLVTSDNPRTEDPELILKDIEAGLVEDGVAAESYKLIVDRRKAIEKAIEMASPGDVVL 461

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AGKGHET  ++  GE     D  + ++ + 
Sbjct: 462 IAGKGHETYQLIA-GEVLDFDDRIVAKDAIR 491


>gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 487

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 158/485 (32%), Positives = 245/485 (50%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IF     +  I E++ DSR+++AG +F+A+ G + DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFAHAGHDLLIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY +Q  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVQGATVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G        A ++ L TTP+PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T QAY  AK +LF     K     +  DD 
Sbjct: 179 HGLDQGRVTALAFDVAVLTNLSRDHLDYHGTMQAYGEAKAKLFAWNDLKCRVINL--DDE 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++      +     S+   G ++++++        + T+     +      L G F 
Sbjct: 237 FGRQLAAEKRESRLITYSLEDAGAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L+ L KL    GR + +G  ++   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAIGALLGLDYALDEILKVLPKLEGPAGRMQRLGGGTQPL-VVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +R    G+++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPR+EDP++I  +
Sbjct: 356 VLTALRPHAKGKLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDD 415

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G   +        R +AI   I   +  DV+V+AGKGHE    + NGE+    D   
Sbjct: 416 IRAGFMAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEI-NGERHAFSDLVE 474

Query: 489 IREIL 493
               L
Sbjct: 475 ADHAL 479


>gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
 gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
          Length = 487

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 249/504 (49%), Gaps = 34/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++YK          +      E +I ++  DSR ++ G +FVA+ G + DGH F
Sbjct: 1   MKVLKDILYKV-------SLVSTTGDMEVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +A+A GA+A++           + ++     + V N+ K + + A   +    E   +
Sbjct: 54  IDKALALGAKAVIFEK------LPSELQKGITYVQVVNSAKAMGIMAGNYFDNPSEKLKV 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           +AVTGT+GK++  + + Q+  R G S+  +    + I+        TTP  + +   L  
Sbjct: 108 VAVTGTNGKTTTVTLLHQLFMRMGYSTGLLSTVENKINEEVIPATHTTPDSVSIQALLKQ 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G TH  +EASSH + Q R+ G+KL    FTN+  DH+DYH T   Y  AK +LF+E
Sbjct: 168 MLEAGCTHCFMEASSHAIVQERIAGLKLAGAVFTNISHDHLDYHLTFDEYIKAKKKLFDE 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A++  DD     +++    +               +             + ++
Sbjct: 228 -LPKAAFALVNGDDKRGMVMLQNCKGSHQTFGLKTPAEFKAKIISNTLEG------LELD 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                  F + G F  YN L   G  + +G +   VL  L  +    GRF+    +  G 
Sbjct: 281 INGTLIWFMMIGAFNAYNLLGVLGTAVLLGEEEEEVLRELSGIKGARGRFDR--ISIGGV 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +LK I  + +G  ++I + GCGG+RD+ KRPIM KIA+  +D  I
Sbjct: 339 TAIVDYAHTPDALDNVLKTINGVRTGVEQLITIVGCGGNRDKTKRPIMAKIAVQESDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP  I  ++  G     I   +   +R EAI+TA  + NK D++++AGKGH
Sbjct: 399 LTSDNPRFEDPMDILKDMQTGIGVSEIRKSLTIEDRKEAIKTACMLSNKGDIILIAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +I+ E L
Sbjct: 459 EDYQEIK-GVKHHFDDAEIVTEYL 481


>gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia typhi str. Wilmington]
 gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington]
          Length = 498

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 158/489 (32%), Positives = 249/489 (50%), Gaps = 23/489 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++         ++  KIN +S++S+ ++   +F A+ G   DG+ FI  A+  GA  ++ 
Sbjct: 4   ILFMKYNLNQLFKNYKINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVIT 63

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +  +             ++ V++  + L       Y K P+N+++VTGT+GKSSV S++
Sbjct: 64  ENKKNTVIDK--------VIYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYI 115

Query: 134 QQICQRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            Q        +  IG          +       LTT   +   K    L+   + +++ E
Sbjct: 116 AQTYFLLRKKAAFIGTIGLEIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFE 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGL+Q RL   K+   SFT+  +DH+DYH T++ Y  AK++LF + L     AI+ +
Sbjct: 176 ASSHGLEQGRLGKTKVNIVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNS 235

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D    + V     N   + ++VG +G    + K+      Q +        ++    + G
Sbjct: 236 DIEEIEFVKDYLRNNNVKFITVGKKGDV-QITKITCSLTGQNIDFIFNNIIYNLHTLIIG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  N L+AA      G     ++E L K+  V GR E       G  I+VDY+HT ++
Sbjct: 295 SFQASNLLIAALTLYYTGFKFDEIIEALSKVKPVKGRMER----IDGTNIFVDYSHTPDA 350

Query: 369 LEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           LE  L  ++ I    G++ V+FGCGGDRD+ KR +MGKIA   AD  I+TDDNPR EDP+
Sbjct: 351 LEKALIELQNIKPHGGKLSVIFGCGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPK 410

Query: 427 KIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
            IR EII GI    + E  +R EAI+  I  L + D+L++AGKGHE   IV + +K    
Sbjct: 411 LIRTEIIRGIGTATYTEIESREEAIKYGINNLKQDDILLIAGKGHENYQIVGD-KKLPFD 469

Query: 485 DCDIIREIL 493
           D +++R+ L
Sbjct: 470 DSEVVRKYL 478


>gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 495

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 249/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+     +              R + E++ DSR   AG +FVAIVG+K DG  +IP
Sbjct: 5   NLRDLLAPWVQD-----------TPARALREMTLDSRVAAAGDLFVAIVGHKADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AIV  +     D +       P++ + N  + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G         A     TT S + + + LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   ++Y  AK  LF E  
Sbjct: 174 EQGATFAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFGEHR 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTIS 294
             +      ADD      + +  +A    +      G +G+++   ++    N   +   
Sbjct: 234 VGQMIIN--ADDEVGLRWLAQLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +    L G F V N L+A    +++G     ++    +L  V GR E      +
Sbjct: 292 SSWGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFQAEGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +
Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPRSE+P+ I A+I+ G+           R EA+ +AI    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             +V N       D   +  +LG+I
Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494


>gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 496

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 161/506 (31%), Positives = 249/506 (49%), Gaps = 31/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L+     +                +  ++ DSR ++  ++FVAI G + DGH +I
Sbjct: 1   MLFRELLEAVEADAAGG-------DLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+ +GA A+V+            +       +V + R+ L+L ++R YG     +  +
Sbjct: 54  GEALERGALAVVMERRVE-------LPPGVAWALVPDARRALALLSARFYGNPSFKMKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  S +  I   +G     IG   + I       + TTP    L + L  +
Sbjct: 107 GVTGTNGKTTTTSLIADILAGAGCRVGLIGTVNNRIGDRVLPVKHTTPESADLQQLLHEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
             + V    +E SSH L  HR+DG +     FTNL +DH+D+H+  + Y  +K++LF+  
Sbjct: 167 VIEKVDACVMEVSSHALALHRVDGSEFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWL 226

Query: 237 ----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +   A+I ADD ++ + ++ A   G            +  + +          
Sbjct: 227 GRPGHKREAGIAVINADDPHAGQFIRAAG--GTVYTYGIKNAADVRAESISIGARGACFG 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ +         + G F VYNAL A     A+G+ +  + E LEK    PGRFE V  +
Sbjct: 285 VAGKWGRLRLDLRITGLFNVYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMV-DS 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT + LE ILK  R IT GR+I VFGCGGDRD+ KRP+MG IA   +D 
Sbjct: 344 GQDFAVVVDYAHTPDGLENILKTARKITEGRLITVFGCGGDRDRTKRPLMGGIAARYSDF 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AI+T DNPR+EDP KI  EI  G+       ++ + +R +AIR A+EM  + DV+V+AGK
Sbjct: 404 AIITSDNPRTEDPLKIIKEIEEGMKTAGWERYVTEPDRRKAIRLAVEMARRGDVVVIAGK 463

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE   I+    K    D       L
Sbjct: 464 GHEDYQIIGT-RKIPFNDRREAAAAL 488


>gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 494

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 243/501 (48%), Gaps = 20/501 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++++    L+    I         + ++  DSR +  G +F+AI G++ DG  FI QA+A
Sbjct: 1   MLHRALDSLLRPFGI---NAPALSLTDIQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVA 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
           QGA AIV            T     P + + +    LS  A   Y +    +  + +TGT
Sbjct: 58  QGATAIVFEEDGEFVAPPLT----IPCIGIRDLPARLSELAGYFYEQPANKLDLVGITGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GKS+ A  V       G  +  +G           +   TT S + +   L+ L  QG 
Sbjct: 114 NGKSTTALLVANWRTLLGGKAGVMGTIGNGLFGELVEAENTTGSAVQVQANLASLQQQGA 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++E SSHGL QHR+  +   A  FTNL RDH+DYH T +AY  AK  L +  L  E 
Sbjct: 174 ALVAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLK--LVDEP 231

Query: 243 PAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            A+I ADD   ++ +                 + G+ +  +         +  I+    +
Sbjct: 232 CAVINADDQLGRQWLAAYPGAVAFSVNGPIADHPGRQLTAQDPHFHQQGFRTQINSSWGN 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G F V N L A G  + +G D  ++L    +L  V GR E  G  +      
Sbjct: 292 GVLSAPLLGRFNVSNVLAAMGAMLVLGYDFNVLLATAPQLQPVTGRMECFGGGNAPL-AV 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE  L+ +R    G++  + GCGGDRD+GKRP+M  +A   AD  I+TDDN
Sbjct: 351 VDYAHTPDALEKALQALRVHCEGQLWCLVGCGGDRDRGKRPMMAAMAEQHADRVILTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR+E+P +I A+++ G+        + +R++AI  A+   +KQD+++VAGKGHE   I+ 
Sbjct: 411 PRTEEPAQIMADMVAGLRDPAAVQVEHDRVKAIALALGQASKQDIILVAGKGHEDYQIIG 470

Query: 477 NGEKKMSVDCDIIREILGLIL 497
             +K+   D + +   L  +L
Sbjct: 471 T-DKRHYSDRETVVAALHTLL 490


>gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
 gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
          Length = 483

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 238/504 (47%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  ++ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI++GA AI+        D           + V ++   +   A+  YG     +  +
Sbjct: 54  PAAISKGATAILCE------DMPEKPVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L + L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYAFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +              + 
Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  +  G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVR-SKDGVT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALTNVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        +   +R EAIRTA  +  K DV+++AGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + ++ +L 
Sbjct: 460 NYQEIK-GVKHHFDDKEEVKRMLN 482


>gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
 gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
          Length = 481

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 244/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++      L+  +        +  ++ +  DSR ++A  +FVA  G   DGH +I
Sbjct: 1   MMLDDILQNVI--LLKTIGNI-----DINVSGIQFDSRKVEAENVFVATRGTASDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  GA AIV        +  + I  N   + V+++   L   AS  Y      +  +
Sbjct: 54  ATAIENGAVAIVCE------ELPSEINPNITYVKVEDSSDALGKMASAWYDFPSTKMTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ + Q+ +  G  S  +    + ++  A +   TTP  + L   L+ +
Sbjct: 108 GVTGTNGKTTIATLLYQLFRELGHKSGLLSTVCNYVNDLAVEATHTTPDALALNALLAQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH +DQHR+ G++     FTN+ RDHIDYH T + Y  AK + F+  
Sbjct: 168 VDAGCEYAFMEVSSHSIDQHRISGLEFDGAIFTNITRDHIDYHLTFENYLKAKKQFFDN- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  ++ A+  ADD     +++ +          G       + +              + 
Sbjct: 227 LSTDAFALTNADDKNGLVMLQNSKAKKYTYSLRGMADFKTRILEHGFEGMLL------DM 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +      G+F   N     G  + +G D   VL  +  LH V GRFE +  +  G  
Sbjct: 281 NDKEVNVSFIGKFNASNLSAVFGAAVLLGQDELEVLRIISSLHSVSGRFETLH-SPAGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  ++  I  I   +GR+I V GCGG+RD+GKRP+M + A++ +  AI+
Sbjct: 340 AIVDYAHTPDALVNVIGTINQILQGNGRLITVVGCGGNRDKGKRPMMAREAVNGSWKAIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P++I  +++ G+        +   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQEILNDMLAGLDVVEKAKSLTIVDRREAIKTACALAQAGDVVLVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+  G K    D + +R+  
Sbjct: 460 DYQIIQ-GVKHHFDDREEVRKCF 481


>gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
 gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
          Length = 471

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 161/474 (33%), Positives = 232/474 (48%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A++  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +       ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLGQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G+ G ++    V    N   +       +      L G F V N LVA    +++
Sbjct: 239 GQVPTGWNGPWLSANNVHYHDNGASIAFDSSWGEGKLESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E          + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLATAPNLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    ++DV++VAGKGHE   +V N       D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEEDVVLVAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVM 470


>gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 495

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 170/505 (33%), Positives = 249/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+     +              R + E++ DSR   AG +FVAIVG+K DG  +IP
Sbjct: 5   NLRDLLAPWVQD-----------TPARALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AIV  +     D +       P++ + N  + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G         A     TT S + + + LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   ++Y  AK  LF +  
Sbjct: 174 DQGATFAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFADHR 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTIS 294
             +      ADD      + +  +A    +      G +G+++   ++    N   +   
Sbjct: 234 VGQMIIN--ADDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +    L G F V N L+A    +++G     ++    +L  V GR E      +
Sbjct: 292 SSWGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGAQLQPVCGRMEVFHAEGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +
Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPRSE+P+ I A+I+ G+           R EA+ +AI    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             +V N       D   +  +LG+I
Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494


>gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 487

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 243/501 (48%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +   +          I ++  DSR I A  +FVAI G   DGH FI  
Sbjct: 4   LKDILYKVAIESVKGSTA-------VDIKKIHFDSRLISAQDVFVAIKGETADGHAFIEA 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+A GA  +V        +  + +      + V + R+ L++ AS  Y        ++ V
Sbjct: 57  AVANGANVVVCE------ELPSEVIPEVSYIQVKDCREALAVMASNYYDNPSANLKLIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V S + Q+ +  G     I              +LTTP  + +   L  ++ 
Sbjct: 111 TGTNGKTTVTSLLYQMFKTLGYKVGLISTVVIKVDDKDYPTKLTTPDSLTINSYLKEMNE 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV    +E SSHG+ QHR  G+    G FTNL +DH+DYH+T   Y + K R F++ L 
Sbjct: 171 VGVEFCFMEVSSHGIAQHRTLGLNFEGGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQ-LS 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+  A+   DD     +++                  + + +           + +    
Sbjct: 230 KKGFALTNVDDKNGNYMLQNTKAKTFGYGVKNLTDYKVKILEKSFSG------LKLNING 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +      G+F  YN L    +   + +     L++L +L  V GR++    +S G  + 
Sbjct: 284 TEVWSRFIGDFNAYNLLAVYAVADLLEVKDIENLQNLSQLKPVEGRYQ-HHMSSTGIHVI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+    I S    +I V GCGGDRD  KRP+MGKIA +L+   I+T 
Sbjct: 343 VDYAHTPDALQNVLQTTNDIRSRSEELITVVGCGGDRDTTKRPLMGKIAGNLSTKVILTS 402

Query: 418 DNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+EDP+ I  +I  G     +   +   +R +AI+TA  +  ++D++++AGKGHET 
Sbjct: 403 DNPRTEDPDSIIKDIEKGVEPQDVSKTLSITSRQQAIKTACILAQQRDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NG +    D  I++E+L
Sbjct: 463 QEI-NGIRSDFDDLKIVKELL 482


>gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 492

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 147/498 (29%), Positives = 230/498 (46%), Gaps = 22/498 (4%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L + L    +    + +  +  DSR +  G +FVAI G+  DG  FI +AI  GA AI
Sbjct: 2   RDLKDILKYIEIDAPSQLVKHLRLDSREVTPGDVFVAIKGHTLDGGQFIAKAIENGAIAI 61

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +       +          P+ +V    K L   ASR Y +  + +  + VTGT+GKS+ 
Sbjct: 62  IADRLCEFESSFE------PLYLVSELDKKLPELASRFYSQPSQTLDLIGVTGTNGKSTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            + +  + Q     S  IG               TTPS + L   LS L+SQ    V++E
Sbjct: 116 TAMIAHLAQFCSTESAIIGTLGYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLVAME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+   +  A  FTNL RDH+DYH    +Y +AK+ LF +   +    ++  
Sbjct: 176 VSSHGLVQQRVAKCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRD--FEPQVVVLNQ 233

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD  +++ +++                   ++++   V          +S    D     
Sbjct: 234 DDFQAEQWLEKYDFNNLICYGRKNLAPKNARYVYFSDVEYSSEGISAQLSTSWGDISIKS 293

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL GEF +YN   A    + +G     ++    +L  V GR +            VDYAH
Sbjct: 294 PLFGEFNLYNLTAALATLLGLGYPLEQLVAGCAQLQPVAGRMQAFSQAGMPTC-VVDYAH 352

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++L + L+ ++    G +  VFGCGGDRD+GKR +M + A   A+  I+T DNPRSE+
Sbjct: 353 TPDALALALQALQLHVPGGVSCVFGCGGDRDKGKRALMAQAAEQNANKIIITSDNPRSEN 412

Query: 425 PEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A++  G+        + +R  AIR AIE     DV+++AGKGHE   I+ +    
Sbjct: 413 PDDIIADVAGGLTHPQNAHLEADRATAIRFAIENATADDVILIAGKGHEDYQIIGDKRID 472

Query: 482 MSVDC---DIIREILGLI 496
                   + +++ L  I
Sbjct: 473 FCDRRYVQEQLKKALRGI 490


>gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 487

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 160/484 (33%), Positives = 235/484 (48%), Gaps = 14/484 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G            R +AI   I   N  DV+V+AGKGHE    + +G++    D    
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475

Query: 490 REIL 493
            + L
Sbjct: 476 AKAL 479


>gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
 gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
          Length = 495

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 159/498 (31%), Positives = 253/498 (50%), Gaps = 16/498 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  LI   F        +   +     I  +  DSR I++G  FVAI G+  DG  FI +
Sbjct: 7   LSKLIAPWF-------ELTDPKLASLVITHLELDSRQIKSGDTFVAIRGHAVDGRQFIDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIAQGA A++  +           R   P++ +    + LS  A RLYG H   ++ VTG
Sbjct: 60  AIAQGANAVLAEADAHHAHGQIEYREAVPVMYLSELGQHLSEMAGRLYGGHHNQLIGVTG 119

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+ +G
Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLWDLAERG 179

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   + 
Sbjct: 180 AQYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN 239

Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AII  DDA   + +K+     G  +++     + I  ++V    +   +       + 
Sbjct: 240 --AIINVDDAVGAQWVKQLPQAIGVSLVTKPDTAQAIWARQVEYAESGITLNFDSSWGEG 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL GEF   N L+A    +++G + + +L    +L  V GR E      +  +I V
Sbjct: 298 ELHAPLIGEFNACNVLLAFATLLSLGFEKSALLATAPQLRPVIGRMELFQRE-QKAKIVV 356

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNP
Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 417 RSESPQAIVADMVVGLTHPERAHIEHHRFQAASYALQNAGAQDIILLAGKGHEDYQVLAN 476

Query: 478 GEKKMSVDCDIIREILGL 495
                  D +  +++L L
Sbjct: 477 ETIHY-SDRETAQQLLEL 493


>gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
 gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
          Length = 484

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 249/504 (49%), Gaps = 34/504 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ +I      E+I  ++        ++I+ ++ DSR I+   IF+A+ G + DGH +
Sbjct: 1   MKLEKIIKGITVNEIIGDMA--------QEISGINMDSRLIEPDHIFIAVKGTQTDGHTY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI +GA  +V        +   T+  N   + V++T   +   A+  YG     +  
Sbjct: 53  IQKAIEKGARTVVCE------NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ +  + ++ G  +  I    + I   A     TTP PI L K L  
Sbjct: 107 VGVTGTNGKTTIATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK   F +
Sbjct: 167 MADEGCKYAFMEVSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKK-AFFD 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD     + +                    + +              +
Sbjct: 226 SLPKTAFALTNLDDKNGLVMTQNTKAKVHTYSLRSLSDFKGKVLEDGFEGMLL------D 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +      G F   N L   G    +G  +  VL  L  L  V GRF+ +  + +G 
Sbjct: 280 INNVEVNVQFIGRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLR-SPKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +L  I  + +G+  +I V G GG+RD+GKRP+M + A+  +D  I
Sbjct: 339 TAIVDYAHTPDALENVLNAIHEVLNGKGNVITVVGAGGNRDKGKRPLMAQEAVKQSDKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR E+P++I  +++ G     +   I   +R EAIRTA  +   +DV++VAGKGH
Sbjct: 399 ITSDNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G K    D +++R+I 
Sbjct: 459 ENYQEIK-GIKHHFDDKEVLRDIF 481


>gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 490

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 164/489 (33%), Positives = 237/489 (48%), Gaps = 14/489 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ + +   ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +
Sbjct: 3   DLLAPWGLDVPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
                D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++    +
Sbjct: 63  DGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +S  +G               TT S + +   L  L  QG T  ++E SSH
Sbjct: 123 AQWAQMLGETSAVMGTVGNGLLGHVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       ADD  
Sbjct: 183 GLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEV 240

Query: 253 SKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  +++   A    +      G+ G ++   +V    N   +       +      L G
Sbjct: 241 GRRWLEQLPQAVAVSMENNIPVGWNGPWLSATQVHYHDNGASIAFDSSWGEGQLESRLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N LVA    +++G     +L     L  V GR E          + VDYAHT ++
Sbjct: 301 AFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF-NALGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I
Sbjct: 360 LEKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAI 419

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G+           R EA+ +AI      DV+++AGKGHE   +V N       D
Sbjct: 420 IADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDY-SD 478

Query: 486 CDIIREILG 494
              +  +LG
Sbjct: 479 RVTVARLLG 487


>gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
 gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
          Length = 496

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 233/499 (46%), Gaps = 21/499 (4%)

Query: 9   KDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL+  +           +I  +  DSR    G +F  I G   D H FIP     G
Sbjct: 3   KQLEELVALVPGAHVTGNAGTEITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++   A      S  +     +L V N ++ L       Y        ++ +TGT+G
Sbjct: 63  ARAVLTERA------SVDVPDGVAVLYVPNLQEALDTIVPYFYDYPARAMRVIGITGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  V+ I + +G     IG   + I         TTP  I L + L+ + ++G+  
Sbjct: 117 KTTTSYLVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDT 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKE 241
           V +E SSH L   R+ GI+    +FTNL +DH+D+H+T + Y  AK  LFE       KE
Sbjct: 177 VVMEVSSHALALGRVAGIEFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKE 236

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               +   D  + E M+   +       V +           A    +   +    + F 
Sbjct: 237 GKTAVLNADDAASETMRAHTHCPVITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFH 296

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G F V+N L A G  +A  +++A +   L     VPGRFE V        + VD
Sbjct: 297 LHTGITGLFNVHNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELVREGQ-DFAVIVD 355

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + +E +L+  R +T GRII VFGCGGDRD+ KRPIMG+I  ++ADIAI+T DNPR
Sbjct: 356 YAHTPDGMENVLRTARAVTKGRIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPR 415

Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDP  I  E+  G+        + +  +R  AI  AI+     D +V+ GKGHET  I+
Sbjct: 416 TEDPAAIVNEVERGVLPVIGDKPYEKIVDRRTAIFHAIQRAQAGDTVVILGKGHETYQIL 475

Query: 476 TNGEKKMSVDCDIIREILG 494
            +G      D +  RE + 
Sbjct: 476 KDGT-IHFDDREQAREAIR 493


>gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
 gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
          Length = 518

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 144/511 (28%), Positives = 236/511 (46%), Gaps = 25/511 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L    F  + + +   P    E +I  ++ +S+  +   +FV I G++ DGH +I
Sbjct: 1   MKLSVL----FKRIQHAVIQMPELEEEMEIRGITCNSQKAEEDSLFVCIQGSRADGHDYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
            +A   GA  I++    S          N  +++V +TR+ L+  +   +G       ++
Sbjct: 57  EEACNLGASCILIEKLVSG-GRMLKFPENVAVVLVKDTREALAGISRIWFGSPADKLKVI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GKS+VA  ++++ +  G     IG  +    +    ++ TTP    +    + +
Sbjct: 116 GVTGTKGKSTVAVMIREMLESLGQKCGLIGTIAHHLGNEVVTSQNTTPDAFTIQSYFAKM 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SS G+ QHR+DGI      FTN G DHI     + A           L
Sbjct: 176 VEAGCHYAVMEVSSQGIKQHRIDGIWFEIAVFTNFGEDHIG--PGEHASLGEYRYYKSCL 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG--------YQGKFIHLKKVCAIHNKQ 289
             +    I   DDA    + +R                         +  +K+  +    
Sbjct: 234 FEQCRIGIGNLDDAQCSYMFQRKCCTKYGFTCREEEGQERGFRNSHVLTAEKISFLMEGG 293

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++       D  +   LPG+F VYNAL A      +G +     + L+ L V  GR E V
Sbjct: 294 ELKTVFYADDRKYELALPGKFNVYNALAALQTVSCLGFEREEAGDVLKHLVV-RGRMERV 352

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                    Y+DYAH + SL  +LK +R     RI++VFGCGG+R   +R  MG++A +L
Sbjct: 353 DAGE-NILCYIDYAHNAMSLAKVLKMLRIYEPERILLVFGCGGNRAGSRRSGMGRVAGEL 411

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           A++ I+T DNPR E+P KI A++  GI      +    +R EA+  A+EM  + D+L++A
Sbjct: 412 ANLTIITSDNPRWEEPAKIMADVEEGIKETSGAYRMIQDREEAVLFAVEMARQGDILLIA 471

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GKGHE    +  G +    D +++R+ + L+
Sbjct: 472 GKGHENYQEIQ-GVRYPMDDRELVRKAVRLV 501


>gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
 gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
          Length = 495

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 161/495 (32%), Positives = 249/495 (50%), Gaps = 10/495 (2%)

Query: 7   IYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
             K   +LI+  L+I         +  +  DSRHIQAG  FVAI+G+  DG  FI +AI 
Sbjct: 3   TSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAIT 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  ++  +       S   R   P++ ++   K LS  A RLYG H  +++AVTGT+G
Sbjct: 63  QGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++++  + Q     G  +  +G T     S  Q    TT + + +   L  L+ QG  +
Sbjct: 123 KTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEY 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG F+NL RDH+DYH T  A   A  +L      +   A
Sbjct: 183 TAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDA--YADAKLSLFTEHETRQA 240

Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD       ++  H  G  + +     + +   +V    +   + +          
Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLR 300

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G +   +L    +L  V GR E         ++ VDYA
Sbjct: 301 APLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELF-QAPGKAKVVVDYA 359

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD  I+TDDNPRSE
Sbjct: 360 HTPDALEKALRALRVHCQGQLWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRSE 419

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP+ I  +++ G+        + NR +A+RTA+    +QD++++AGKGHE   ++ +   
Sbjct: 420 DPQAIVNDMLAGLKTPQHASVEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAHDTI 479

Query: 481 KMSVDCDIIREILGL 495
               D +  + +L L
Sbjct: 480 HY-SDRESAQTLLEL 493


>gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chitinophaga pinensis DSM 2588]
 gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis
           DSM 2588]
          Length = 488

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 151/507 (29%), Positives = 241/507 (47%), Gaps = 32/507 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++Y      ++          +  +N +S DSR +  G  F+AI G   DGHLF
Sbjct: 1   MKTLRDILYNVSIREVHGS-------TDTAVNSLSIDSRAVTQGGAFIAIKGVHADGHLF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AIAQGA  I+        +   ++  +   ++V+++     + A   Y      +  
Sbjct: 54  IDKAIAQGAAVIICE------ELPQSLADDLTYVLVNSSATAAGVIAGNYYDNPSHKLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ + ++  +       +    + I         TTP  I+L   L+ 
Sbjct: 108 VGVTGTNGKTTIATLLFRLFSKLRFHCGLLSTVQNQIGDKVVPATHTTPDAIHLNALLAD 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +G  +V +E SSH + Q R+ G+K   G F+N+  DH+DYH+T   Y   K   F +
Sbjct: 168 MVDEGCEYVFMEVSSHAVHQQRIAGLKFAGGIFSNITHDHLDYHKTFDEYIKVKK-AFFD 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP  + A+   DD     +++                    + +           + + 
Sbjct: 227 GLPTTAFALTNLDDKRGNVMLQNTRAKKQSYSLKTVADFKGKILENNLTG------LIMT 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +  F L GEF  YN L   G  I +G D   VL+ L  L    GRF+++ +     
Sbjct: 281 VNEKEVHFRLIGEFNAYNLLAVYGTAILLGQDKDEVLQALSDLSGAEGRFDYITSAKDRI 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L  +L  I+ +  G    I V GCGGDRD  KRP+M   A + +D  I
Sbjct: 341 IGIVDYAHTPDALLNVLATIKNLRKGNEQVITVVGCGGDRDTAKRPVMAAAATEHSDKVI 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPRSEDP  I  ++  GIP       +   +R EAI+TAI + N  D++++AGKGH
Sbjct: 401 LTSDNPRSEDPVAIIQQMEAGIPVHQKRKALSITDRKEAIKTAISLANPDDIILIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E    +  G K    D  ++ E+L L+
Sbjct: 461 EKYQEIQ-GVKHPFDDKKVLLEMLELM 486


>gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 157/492 (31%), Positives = 245/492 (49%), Gaps = 32/492 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               +  ++ +  DSR +Q G +F A+ G   DGH FI  A+A+GA A+V+ S       
Sbjct: 16  SGSTDGVVSGLYYDSRRVQPGGLFFALRGASVDGHRFIEDALARGAVAVVMES------- 68

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRS 140
             T+ +    ++V + R+ ++L A+  +G   +++L   +TGT+GK++V+  V+ I   +
Sbjct: 69  PHTLPTGVTGILVKDGRRAMALAAAAYFGDPSKDMLVVGITGTNGKTTVSYLVESILLAA 128

Query: 141 GLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G     +G        A   +  TTP  + L + ++    +G   + +E SSH L+Q R+
Sbjct: 129 GYRPAVLGTVDYRFEGAHLPSSHTTPESVDLMETIADFRGRGADALVLEVSSHSLEQRRV 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG+    G FTNL  +H+DYH   + YF AK+RLF  L  +    ++   D      +  
Sbjct: 189 DGVWFDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVVANSDDSWGARLGA 248

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              A  R               V         ++           PL G++ + N L AA
Sbjct: 249 MLPAVIRCGHASECDVT--ADDVTISVAGIAGSLRTARGTAALQSPLVGDYNLQNLLCAA 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+  A+ +  A + + L +   VPGR E    N RG  + VDYAHT ++LE +L  +R +
Sbjct: 307 GVGAALDMVPATIAKALAQAPQVPGRLE-SIANERGALVLVDYAHTGDALENVLVTLRQL 365

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              R++ VFGCGGDRD GKRP+MG+IA  LAD+AI+T DNPRSEDP  I  ++  G+   
Sbjct: 366 QPRRLLCVFGCGGDRDAGKRPVMGEIAARLADVAILTSDNPRSEDPLAIMQQVESGLRRI 425

Query: 440 IEKG------------------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            E+                   +R EAI  A+ +L   DVL+VAGKGHE   I+   ++ 
Sbjct: 426 HEEPWSLQQARQAAGRGYLSLSDRREAICFAVSLLQPDDVLLVAGKGHEDYQIIGR-QRL 484

Query: 482 MSVDCDIIREIL 493
              D + +R+ L
Sbjct: 485 HFDDREELRKAL 496


>gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
 gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
          Length = 487

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 242/494 (48%), Gaps = 26/494 (5%)

Query: 11  FPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +++N +SI  +    +  ++ V  DSR +  G +FVA+ G   DGH+FI +A+A GA+
Sbjct: 4   LSKILNGVSIKQLIGSMDVTVHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVALGAK 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            +V             +  +   + V+N    L L A+  Y      +  + VTGT+GK+
Sbjct: 64  IVVCEQ------LPQDLSGHITYIQVENAGFALGLIAANFYDNPSAKLKLVGVTGTNGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +VA+ + ++    G     I    + ++    ++  TTP PI L + L  + + G  +  
Sbjct: 118 TVATLLYKLFVELGFRVGLISTVQNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCF 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH + QHR+ G+  + G FTNL  DH+D+H+T  AY  AK   F ++LPK + A++
Sbjct: 178 MEVSSHAVAQHRITGLSFVGGVFTNLTHDHLDFHKTFDAYLKAKK-AFFDMLPKSAFALV 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD     +++                    + +        Q+            F  
Sbjct: 237 NIDDKNGSVMLQNTDAYKKTYGLKNIADFKGRIVESHFNGMLMQIDTREVWIRLVGAFNA 296

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                 YN L    + I +  D+  VL  L +L    GRF+ +  +  G    VDYAHT 
Sbjct: 297 ------YNLLAVYSVAILLEQDTTRVLTILSRLTGAEGRFDTL-VSGNGVIGIVDYAHTP 349

Query: 367 NSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +++E +L+ I  +   +  II V GCGGDRD+ KRP M  +A +L+D  I+T DNPRSED
Sbjct: 350 DAVENVLRTIVDLRKNKEQIIAVLGCGGDRDKTKRPEMAAVAANLSDKVILTSDNPRSED 409

Query: 425 PEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           P++I  E+  GIP           +R EAI+ A+ +    D++++AGKGHE    V  GE
Sbjct: 410 PQQIIREMEAGIPADKKRHVFSITDRYEAIKAAVHLAQPGDIVLIAGKGHEKYQEVM-GE 468

Query: 480 KKMSVDCDIIREIL 493
           K+   D  I++++ 
Sbjct: 469 KRPFDDKAILKDLF 482


>gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
 gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
          Length = 493

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 162/486 (33%), Positives = 242/486 (49%), Gaps = 8/486 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   + I   ++ +  I+ +  DSR I  G  FVAI G+  DG  FI  AI +GA A++ 
Sbjct: 11  LAPWVDISAHEFHDMAISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAINRGANAVIA 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            S         +  S  P++ +D   + LS  ASRLY      ++ VTGT+GK+++   +
Sbjct: 71  QSCERHPQGVCSTESRVPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTNGKTTITQII 130

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G  +  +G          Q    TT S I + + L  + SQG    ++E SSH
Sbjct: 131 AQWLNLVGKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGADFTAMEISSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +   AG FTNL RDH+DYH T + Y  AK  LF E   +   AII  DD  
Sbjct: 191 GLVQGRVKTLPFAAGVFTNLSRDHLDYHGTMEEYELAKRSLFTE--HQCGKAIINVDDQV 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +  ++  +A    L        +   +V    +   +  S    D  F  PL GEF  
Sbjct: 249 GAKWAEQLPDAIQVSLQPLSSTNAVFASQVDYSESGISLAFSGRFGDGQFSVPLIGEFNA 308

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N LVA    +A+GID   ++E  ++L  V GR E    N    ++ VDYAHT ++LE  
Sbjct: 309 NNVLVAFTTLLALGIDKQQLIETAKQLTPVIGRMELFH-NEGKAKVVVDYAHTPDALEKA 367

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +R    G++  +FGCGGDRD GKRP+M +I   LAD  ++ DDNPRSE P  I  ++
Sbjct: 368 LMALRVHCHGKLWAIFGCGGDRDTGKRPMMAEIGERLADHVVLADDNPRSESPSAIVDDM 427

Query: 433 IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G+      I + +R +A++ A+      D++++AGKGHE   ++ N       D +  
Sbjct: 428 LAGMRNPERAIVEHDRFKALQYALANSEVHDIILLAGKGHEDYQVLANETVHY-SDRESA 486

Query: 490 REILGL 495
           +++L L
Sbjct: 487 QQLLEL 492


>gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
 gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
          Length = 495

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 159/498 (31%), Positives = 252/498 (50%), Gaps = 16/498 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +LI          L +   +     I  +  DSR I++G  FVAI G+  DG  FI +
Sbjct: 7   LSELIAPW-------LELTDPKLASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI QGA  ++  +     +  +  R   P++ + +    LS  A RLYG H   ++ VTG
Sbjct: 60  AIVQGANLVLAQADAEHPNGVSEYRQQVPVIYLADLGTHLSEMAGRLYGDHQNQLIGVTG 119

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q  +  G  +  +G T     S  +    TT + + +   L  L+ +G
Sbjct: 120 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLSALEPAANTTGNALQIQATLRDLAERG 179

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   + 
Sbjct: 180 AQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN 239

Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AII  DDA   + +K+     G  +++     + I  ++V    +   +       + 
Sbjct: 240 --AIINVDDAVGAQWVKQLPQAIGVSLVTKPGTAQAIWARQVEYAESGITLNFDSSWGEG 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL GEF   N L+A    +++G +   +L    KL  V GR E      +     V
Sbjct: 298 ELHAPLIGEFNACNLLLALATLLSLGFEKNALLATAPKLRPVLGRMELFQREQKAKM-VV 356

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNP
Sbjct: 357 DYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 416

Query: 421 RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE P+ I A+++ G+        + NR +A   A++    QD++++AGKGHE   ++ N
Sbjct: 417 RSESPQAIVADMVAGLNHPELAHIEHNRFQAASYALQQAGAQDIILLAGKGHEDYQVLAN 476

Query: 478 GEKKMSVDCDIIREILGL 495
                  D +  +++L L
Sbjct: 477 ETIHY-SDRETAQQLLEL 493


>gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
 gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
          Length = 486

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 139/500 (27%), Positives = 230/500 (46%), Gaps = 25/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +    L+           + +I+ +  DSR ++   +FV I G   DGH FI
Sbjct: 1   MKLSKLLERSEYTLVQGT-------EDTEISTLVYDSRKVEENSVFVCISGAAFDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            Q I +GA+ IVV                  ++  D+TRK L+  ++  +G   E ++ +
Sbjct: 54  GQVIEKGAKVIVVQQDVEA-------PKGVTVIRFDDTRKALAEMSAAYFGYPAEELMTI 106

Query: 121 TGTSGKSSVASFVQQIC--QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K             + +G  +  IG   T I      +  TTP    + ++   +
Sbjct: 107 GITGTKGKTTITYMIQSVLEHAGQKTGLIGTIETVIGDERIPSVNTTPESYVIQESFRKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +E SS GL  HR+ G     G FTNL  DHI  ++ +      + +     
Sbjct: 167 ADAGCKNVVMEVSSQGLMLHRVSGFTFDYGIFTNLAEDHIGENEHKDMDDYIRCKSLLFQ 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             ++       DD   + +     +     +  G      H++++               
Sbjct: 227 QCRQGIVNGD-DDYVERIIKGHTCSLETFGMKPGSDVYADHIERIQEPGYLGVSYDLKGK 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++++    +PG+F VYN+L A  LC  +GI    VL+ L  + V  GR E + T      
Sbjct: 286 EEYNVHVDIPGDFTVYNSLAAISLCRHMGIQKKDVLDALNTIQV-KGRLEIIKTPGE-YT 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAH + SLE +L  IR     +I  +FGCGG+R + +R  MG+++  LAD+ +VT 
Sbjct: 344 LMIDYAHNAMSLESLLTTIRKYDPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTS 403

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+E+P  I  +I+ G+      ++   +R EAIR  +E   K D++++AGKGHE   
Sbjct: 404 DNPRNEEPMDIINDILVGVHKGPGEYVTIPDRKEAIRYCMEHAGKGDIVILAGKGHEDYQ 463

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            +  G K    + D+IREI+
Sbjct: 464 EI-RGVKHHMDERDLIREII 482


>gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 483

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 237/504 (47%), Gaps = 32/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       I  +   E +I  V+ DSR +QAG +F+A+ G + DGH++I
Sbjct: 1   MVLSELLKAIQP-------IQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AI +GA A++        D     +     + V ++   +   A+  Y      +  +
Sbjct: 54  PVAIEKGAVAVLCE------DVPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +E SSH +DQ R+ G++   G FTNL RDH+DYH+T + Y  AK + F+++
Sbjct: 168 ADSGCKYVFMEVSSHSIDQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDM 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            PK + ++   DD     + +   +                + +              + 
Sbjct: 228 -PKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGKILESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G F   N L   G  + +G     VL  L  L  V GRF+ V  + +G  
Sbjct: 281 NNHELAVHFIGRFNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAVR-SPKGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R EAI+TA  +    DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDKEDMQKTISIADRREAIKTACLLAQPGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G K    D + + ++  
Sbjct: 460 NYQEIK-GVKHHFDDKEELNKVFN 482


>gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
 gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
          Length = 488

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 232/503 (46%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   +++             +I E+ +DSR +  G +FV I G   DGH ++
Sbjct: 1   MKLTKLLERLDYKVVAGSD-------NIEITELVNDSRKVVPGSVFVCISGAVSDGHQYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
                +GA A++V     + +          ++ V+NTR  L+L ++  +G   E    +
Sbjct: 54  KDVAERGAAAVIVEKDVEVPE-------GLTVIKVENTRYALALMSAAYFGYPAEKLKTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I +  G     IG   + I      +  TTP    + K  + +
Sbjct: 107 GITGTKGKTTTTYMVKAILEEVGHKVGLIGTIEAIIGDKTIPSNNTTPESYTIQKYFAQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  GI    G FTNLG DHI      +       +  + L
Sbjct: 167 VEAGCDCVVMEVSSQGLMLHRTAGIMFDIGIFTNLGEDHIGP---NEHKDFEDYKRCKGL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISV 295
           L K+    I   D    E + +           G +     +    +             
Sbjct: 224 LFKQCKVGIGNVDDKWFEDVFKDATCEIETFGFGEKADLRAIDVKHISRPGYLGVWYHVT 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PGEF VYN+L A  +C    +    + + L+ +  V GR E V  +   
Sbjct: 284 GLMDFDVEIDIPGEFSVYNSLTAIAVCRHFNVPVEKIKDALK-VAKVKGRIEMVKVSD-D 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + +LE +L  +R    GRI+ VFGCGG+R + +R  MG+++  L+D  I+
Sbjct: 342 FTLMIDYAHNAMALESLLHTLRDYNPGRIVTVFGCGGNRSKTRRYEMGEVSGKLSDFTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P+ I  +II G+      +I+  +R EAIR AIE     DV+V+AGKGHET
Sbjct: 402 TSDNPRFEEPQAIIDDIIVGMKKTDGKYIDICDRKEAIRYAIEHGRPGDVIVLAGKGHET 461

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G K    +  +I+E+L 
Sbjct: 462 YQEIK-GVKYDMDERVLIKEVLE 483


>gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 537

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 165/508 (32%), Positives = 258/508 (50%), Gaps = 36/508 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +    S +   + +  I  V   S+ ++   IFVA+ G++ DGH F+  AI +GA AIVV
Sbjct: 37  IFYGNSEYTEFYLDPDIASVHYKSQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVV 96

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVAS 131
                          ++ I+ V+NTRK L   A+  YG   E   I+ +TGT+GK++ A 
Sbjct: 97  QKK---------TVKDSIIIEVENTRKALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAY 147

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            ++ I Q +G  +  IG  +   S     + +TTP  + L K LS +   GVTHV +E S
Sbjct: 148 LIESILQTAGFKTGVIGTINCRYSGKTFPSPVTTPESLDLQKILSEMVIDGVTHVVMEVS 207

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL---PKESPAIIY 247
           SH +D  R++G    +  FTNL +DH+DYH+  ++Y+  K +LF E L   PK+  A   
Sbjct: 208 SHAIDLFRIEGCFFDSAVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTV 267

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +    +        +   + +       I+           +  IS     F     L 
Sbjct: 268 INCDDERGKALSGILSTKCIKTGSDSECDIYASNSRIDTLGIKALISTPESTFSIESELV 327

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N + AAG+   +GI S ++ + ++ L V+PGR E +  N  G  +YVDYAHT +
Sbjct: 328 GKHNIENIMSAAGVASGLGISSEIIKKGIKSLSVIPGRLEKI-NNEAGISVYVDYAHTPD 386

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L+ +L ++R I  GR+I VFGCGGDRD+ KRP+MG++A DL+D A++T DNPR+EDP +
Sbjct: 387 ALKNVLLSLRPIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPTE 446

Query: 428 IRAEIIHGIPG-------------------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I  +II GI                     ++ + +R +AI   I +    DV+++AGKG
Sbjct: 447 IINQIITGIKRNKIDRYEPTAPSLFSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAGKG 506

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496
           HET  ++   +     D       L  I
Sbjct: 507 HETYQLIG-KDSFPFDDRLEAGFALSQI 533


>gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya zeae Ech1591]
 gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591]
          Length = 494

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 171/497 (34%), Positives = 246/497 (49%), Gaps = 13/497 (2%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
               L + L+ +     ER + E++ DSR   AG +FVAIVG+K DG  +IPQAIAQG  
Sbjct: 2   TDRNLRDVLAPWVKDAPERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVA 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A+V  +  +  D + T     P++ +D+    LS  A R Y +      ++ VTGT+GK+
Sbjct: 62  AVVAQADEATPDGTLTEMHGVPVIYLDDLNLRLSALAGRFYRQPSSSLQLVGVTGTNGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    + Q  Q  G +S  +G            +  TT S + + + LS L +QG    +
Sbjct: 122 TTTQLLAQWSQALGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAA 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL QHR++ +   A  FTNL RDH+DYH     Y  AK RLF E    +     
Sbjct: 182 MEVSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQVGQKIIN- 240

Query: 247 YADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ADD   +  + R  +             + +++   ++    +   VT           
Sbjct: 241 -ADDEVGRRWLSRLPDAVAVSVTGEIDSARARWLKATRIDYHDSGFTVTFDSSWGGGAIN 299

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L GEF V N L+A    +++G     ++E    L  V GR E    + R   + VDYA
Sbjct: 300 SRLMGEFNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLADGRPT-VVVDYA 358

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L   R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSE
Sbjct: 359 HTPDALEKALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSE 418

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP+ I  +I+ G+           R EA+ +A+      DV++VAGKGHE   +V N   
Sbjct: 419 DPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERL 478

Query: 481 KMSVDCDIIREILGLIL 497
               D   +  +LG+I+
Sbjct: 479 DY-SDRITVARLLGVIV 494


>gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
 gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
          Length = 471

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 162/474 (34%), Positives = 234/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S +     P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVSEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +       ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLSQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G++G ++  +KV    N   +       +      L G F V N LVA    +++
Sbjct: 239 SQVPTGWKGPWLSARKVQYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E          + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHALAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI      DV+++AGKGHE   +V N       D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 470


>gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 481

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 155/501 (30%), Positives = 237/501 (47%), Gaps = 31/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLF 59
           M+L+ ++     EL             R I+E+  DSR I+    +F+AI G   DGH +
Sbjct: 1   MELKKILENVEYEL-------QQGDINRDISEIIYDSR-IKTRCGLFIAIKGYMSDGHKY 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  GA  IVVS A         + +N  ++ V +TR  ++  A   YG   + +  
Sbjct: 53  VSNAIENGARVIVVSDAV-------FVAANIAVVRVKDTRAVMAAIAGNFYGHPSKELAL 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S    + +I +        IG   + I     +   TTP  I L K    
Sbjct: 106 VGVTGTNGKTSTTFLLAEILEAYRKKIGVIGTIENRIGKQVMETARTTPESIDLQKLFRK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++++ V    +E SSH L  +R+DG     G FTNL +DH+D+H+T   Y  AK +LF  
Sbjct: 166 MNTEDVDVAIMEVSSHALVLNRVDGCDFDIGVFTNLTQDHLDFHETMDNYAAAKAKLFSM 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                                      G +  +          K +    ++ Q  +   
Sbjct: 226 CKISIINVDSPYSKVMLDSCKAETITYGIKNPAT------FFAKDIVIHAHETQYVLEYN 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GKD   + P+PGEF VYN + A      +G+    +   L+ +  VPGR +    +++G 
Sbjct: 280 GKDLQIVVPIPGEFTVYNTMCAIICAYKLGVPLDFIAXALKNVKGVPGRVQ-SFQSTKGY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + LE +L  I+    G I+ VFGCGGDRD  KRPIMG+IA   +    +T
Sbjct: 339 SVLVDYAHTPDGLENVLTAIKQFAKGDIVTVFGCGGDRDNKKRPIMGEIASKYSTKVYIT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPRSE+P++I  +I  G       +  + +R  AI  A+    K DV+++AGKGHET 
Sbjct: 399 SDNPRSEEPDEIIRQIEVGAKKHITPYEIESDRKTAIIKALSFAKKDDVILIAGKGHETY 458

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + +G      D +++ E L
Sbjct: 459 QHLKDG-IIHFDDSEVVLEFL 478


>gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
          Length = 463

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 258/476 (54%), Gaps = 25/476 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  ++ +S+ ++ G+IFVAI G++ DGH F+ +A+++GA+ ++V     +        +
Sbjct: 6   DVKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKDVGI--------T 57

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  I+ V +TR+ L    S  YGK  +   ++ +TGT+GK++    V+ +    G+ +  
Sbjct: 58  DNRIVKVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGL 117

Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +G      +    +    TTP P      L  +   G   +  E SSH LDQ R+     
Sbjct: 118 VGTIYYRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHF 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL  DH+DYH++ + YF AK+RLF+E   +   A++ +DD Y K +++      
Sbjct: 178 HIVGFTNLSHDHLDYHKSMEEYFKAKLRLFKEYTYE--YAVVNSDDEYGKRIVRELKGRA 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                 G       +          ++ ++ EGK + F   L G+FQ YN  +    C+ 
Sbjct: 236 ITYGREGDFK----ILDFDTGFEGSKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCML 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GI+   + E L+K++V PGRFE    +  G  + VDYAHT ++LE +LK+IR +++GR+
Sbjct: 292 VGIEVQAIEEGLKKVYV-PGRFETYRGD--GFLVIVDYAHTPDALENVLKSIRRLSTGRV 348

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIE 441
           I +FG GG+RD+ KRPIMG +A   +D+ ++T DNPR EDP  I  +I+ G+      + 
Sbjct: 349 ITLFGAGGNRDRTKRPIMGSVAEKWSDLLVITSDNPRDEDPMDIIRDILQGVKDTSKVLV 408

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           + +R +AI+ AI +  + D +++AGKGHE    +  G K    D D+++E+L + L
Sbjct: 409 EEDRKKAIKMAISLAEEGDTVLIAGKGHEDYQEIK-GVKYPFKDSDVVKEVLSVRL 463


>gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae Cit 7]
          Length = 487

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 162/486 (33%), Positives = 237/486 (48%), Gaps = 14/486 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+AI G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLADLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDTF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELTGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD A VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGAWVTDDNPRSESPASIFDDI 416

Query: 433 IHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G   +        R +AI   I   N  DV+V+AGKGHE    + NG+++   D    
Sbjct: 417 RPGFAAVDKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475

Query: 490 REILGL 495
              L +
Sbjct: 476 ASALAI 481


>gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
 gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
          Length = 487

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 249/501 (49%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++Y+   E +   +          I +V  DSR      +FVAI G + DGH +I +
Sbjct: 4   LKDILYRVTLESVVGNTA-------IAITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+AQGA AI+        +    I +    + V +T   L+  AS  YG       ++ +
Sbjct: 57  AVAQGALAIICE------EMPQQIVNGITYVKVADTSSALATIASNYYGNPSANLKLIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS + Q+ +++G  +  +     +  +       TTP  + + K L+ +S+
Sbjct: 111 TGTNGKTTIASLLYQLFKKAGYKTGLLSTVKIMVDTIEHKATHTTPDSLTINKYLAEMSA 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV +  +E SSHG+ Q R +G+    G FTNL  DH+DYH+T   Y + K + F+E LP
Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLHFEGGIFTNLSHDHLDYHETFAEYRDVKKKFFDE-LP 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K + A++  DD     +++             Y      + +           + ++ +D
Sbjct: 230 KTAFALVNNDDKNGPVMVQNTKAKKVTYALKSYADYRAQILENQLSG------LLLKVQD 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L        + +D    L+ L +L  V GRF+    +       
Sbjct: 284 QEVWVKLIGSFNAYNLLAIFAAAELLELDQMEALQLLSELESVSGRFQ-YFISEGNVTAI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I  I +     I V G GGDRD  KRP MG IA  L+  AI+T 
Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVIGAGGDRDTTKRPKMGNIASALSTKAIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSE+PE I  +I  G+        +   +R +AI+TA ++ N  D++++AGKGHET 
Sbjct: 403 DNPRSENPEAIIEQIEAGVEPIHYKRILSITDRKQAIKTACQLANAGDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NGE+    D  I++E L
Sbjct: 463 QEI-NGERFDFDDYKIVQETL 482


>gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 490

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 146/499 (29%), Positives = 222/499 (44%), Gaps = 25/499 (5%)

Query: 7   IYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
             K    L+  L    +    +  INEV  DSR      +FVA+ G + DGH FIPQ + 
Sbjct: 5   TSKTLTSLLRGLKPLQVLGSTDIAINEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQ 64

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
            G  A+VV +          +     I+ V N+ + L   AS  Y      +  + VTGT
Sbjct: 65  AGISALVVET------IPENVPDQVTIVQVANSAQALGFLASAFYEHPSHQLTLVGVTGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++  + +  +    G     +    + I+S    +  TTP  + +   L+ +   G 
Sbjct: 119 NGKTTTVTLLYDLFSGLGYKCGLLSTVENRIASQVIASTHTTPDAVAINALLAQMVEAGC 178

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +E SSH +DQ R+ G+      FTN+  DH+DYH T   Y  AK   F + L K +
Sbjct: 179 EYAFMEVSSHAVDQGRIAGLDFKGAIFTNITHDHLDYHLTFDNYIRAKK-SFFDQLSKRA 237

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD     + +    +  R            + +         +           
Sbjct: 238 FALVNIDDKRGMVMTQNTAASVNRYSLRQMAEFRARIIENSLTGLHLDIDNQDFYGRLIG 297

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            F        YN L      + +  D    L  L +L    GRF++V    R     VDY
Sbjct: 298 EFNA------YNLLAVYATAVLLEQDKVETLTQLSRLKAAEGRFDYVMDQKRQVTAIVDY 351

Query: 363 AHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AHT ++LE +L+ I+ +     +++ V GCGGDRD+ KRP M K+A   +D  I+T DNP
Sbjct: 352 AHTPDALEKVLETIQALRKADAKVLTVVGCGGDRDRTKRPTMAKVACQYSDQVILTSDNP 411

Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSE+PE I  E+  G+P       +   +R EAIRTA  +    DV++VAGKGHE    +
Sbjct: 412 RSEEPEAIIREMEAGVPAGSRRQVLSITDRKEAIRTACRLAQSGDVVLVAGKGHEKYQEI 471

Query: 476 TNGEKKMSVDCDIIREILG 494
             G K    D +I++E   
Sbjct: 472 K-GVKHPFDDKEILKEEFS 489


>gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya dadantii Ech703]
 gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703]
          Length = 494

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 24/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                   ER + E++ DSR   AG +FVA+VG+K DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------NAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AIV  +  +  + +       P++ +D+  + LS  A R Y    +   ++ 
Sbjct: 54  QAIAQGVAAIVAQADAASPNGTCCELHGVPVVYLDDLNQRLSALAGRFYQHPSDTLQLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ A  + Q  Q  G +S  +G               TT S + + + LS   
Sbjct: 114 VTGTNGKTTTAQLLAQWTQALGKTSAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG    ++E SSHGL QHR++ +   A +FTNL RDH+DYH     Y  AK RLF E  
Sbjct: 174 AQGAQVAAMEVSSHGLVQHRVEDVSFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFSEHR 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +  A+I ADD   +  ++R  +      R      + +++   +V   ++   V    
Sbjct: 234 VGQ--AVINADDEVGRRWLERLPDAVAVSVRGDIGAARRQWLKATRVDYHNSGFTVHFDS 291

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L G F V N L++    +++G     ++     L  V GR E    + R 
Sbjct: 292 SWGQGVIDSSLMGAFNVSNLLLSLATLLSLGYPLEQLVITGSTLQPVCGRMEVFVADGRP 351

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  IV
Sbjct: 352 T-VVVDYAHTPDALEKALEAARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQLADRVIV 410

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSEDP+ I ++I+ G+           R EA+ +AI      DV++VAGKGHE  
Sbjct: 411 TDDNPRSEDPQAIVSDILSGLLDAGRVQAIAGRAEAVTSAIMQAAADDVVLVAGKGHEDY 470

Query: 473 HIVTNGEKKMSVDCDIIREILGLIL 497
            +V N       D   +  +LG+I+
Sbjct: 471 QLVGNERLDY-SDRITVARLLGVIV 494


>gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii NCTC 11218]
          Length = 495

 Score =  317 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 161/495 (32%), Positives = 249/495 (50%), Gaps = 10/495 (2%)

Query: 7   IYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
             K   +LI+  L+I         +  +  DSRHIQAG  FVAI+G+  DG  FI +AI 
Sbjct: 3   TSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKAIT 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  ++  +       S   R   P++ ++   K LS  A RLYG H  +++AVTGT+G
Sbjct: 63  QGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++++  + Q     G  +  +G T     S  Q    TT + + +   L  L+ QG  +
Sbjct: 123 KTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGAEY 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSHGL Q R+  +   AG F+NL RDH+DYH T  A   A  +L      +   A
Sbjct: 183 TAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDA--YADAKLSLFTEHETRQA 240

Query: 245 IIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           II  DD       ++  H  G  + +     + +   +V    +   + +          
Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNAKPNAEQALWAVQVSYAESGITIDVDGSWGAGQLR 300

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL GEF   N ++A    +++G +   +L    +L  V GR E         ++ VDYA
Sbjct: 301 APLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELF-QAPGKAKVVVDYA 359

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD  I+TDDNPRSE
Sbjct: 360 HTPDALEKALRALRVHCQGQLWAIFGCGGDRDTGKRPMMAAIAEAFADRVILTDDNPRSE 419

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP+ I  +++ G+        + NR +A+RTA+    +QD++++AGKGHE   ++ +   
Sbjct: 420 DPQAIVNDMLAGLKAPQHANVEHNRFDALRTALSQAGEQDIILLAGKGHEDYQVLAHDTI 479

Query: 481 KMSVDCDIIREILGL 495
               D +  + +L L
Sbjct: 480 HY-SDRESAQTLLEL 493


>gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
 gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
          Length = 487

 Score =  317 bits (811), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 246/507 (48%), Gaps = 33/507 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++Y    + +   ++       +++  V  DSR + A  +FVA  G + +GH+F
Sbjct: 1   MKVLKDILYGVSIDQLQGSTL-------KEVQGVYFDSRKVVAQSLFVATKGVQVNGHIF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  AI +GA  +V        D      +    +VV N+++ L + A+  +    + +  
Sbjct: 54  IETAIEKGATVVVCE------DLPGLTHAEVTYVVVPNSQEALGVMAANWFDHPSKKLSL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V S +  +  ++G  S  I      +   A +   TTP    +   L  
Sbjct: 108 IGVTGTNGKTTVTSLLYALFTKAGYPSGLISTIKILVGEKAYETAHTTPDVWTINAYLQE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + S+G++H  +E SSHG+ Q R+ G+      FTNL +DH+DYH+T   Y + K  LF+ 
Sbjct: 168 MVSEGLSHCFMEVSSHGIAQMRIKGLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDG 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L   + A++ +DD     +++            G       + +        ++     
Sbjct: 228 -LSTTAFALVNSDDKNGLFMLQNTKAKKMSYGLKGVADFKAQILENQFSGQLLKIDQQEV 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                  F        YN L        +G+++  VL+H+  L  V GRF+    +    
Sbjct: 287 WTTLLGQFNA------YNILAIYATATLLGLNTLEVLQHISTLENVAGRFQ-YFISKNQI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ IL+ I  I +   ++I V GCGGDRDQGKRP+MG IA + +D  I
Sbjct: 340 TAIVDYAHTPDALDNILETIGQIRTKNEKLITVVGCGGDRDQGKRPLMGAIAAEKSDTVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPRSE P  I  ++  G     I   +   NR +AI+TA  M   +D++++AGKGH
Sbjct: 400 LTSDNPRSETPIAILEQMEAGVSPVDIKKVLVVENRKQAIKTACMMATPKDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E    +  G K    D +I++  L L+
Sbjct: 460 EKYQDIK-GVKTPFDDYEIVKNHLDLL 485


>gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
 gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
          Length = 488

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 164/494 (33%), Positives = 245/494 (49%), Gaps = 16/494 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I K   EL+ + +          ++ +S DSR +  G +FVA  G K  G  FI  A+A 
Sbjct: 4   ISKTLAELLPEWAEPTHSG--IAVSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVAD 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A+++ S+    + S     + P++ + +    +   A+R Y +      ++ +TGT+
Sbjct: 62  GAVAVLIDSS----ELSDCPNVDVPVIGISDLVSEIGPVAARFYEQPSRAMTVVGITGTN 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S A FV Q     G+ +  +G          +    TTP  I L K  + L + G  
Sbjct: 118 GKTSCAHFVAQAMNNIGVKTAIVGTVGNGFPGLLEKATHTTPDAIGLQKLFAELKAAGAE 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L+Q R+  +    G FTNL RDH+DYH + +AY  AK RLF+E       
Sbjct: 178 AVVMEVSSHALEQGRVAAVDFDYGLFTNLSRDHLDYHGSMEAYGEAKARLFKE---FNLK 234

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A +   D      + R  +   R +SVG      H        +  +  +     +F F 
Sbjct: 235 AALINGDDSFGRKLLRDESIEARKVSVGRLFGQYHFAAYRLALHGIEAELKTPAGNFAFA 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GEF + N L+ A L    G   A V+E L +L  VPGR + V   +    + +DYA
Sbjct: 295 SKIIGEFNLDNLLLVAALLSEQGFSKAQVMESLSQLDSVPGRMQAV-VAADKPLVIIDYA 353

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L  +R  T+G +  VFGCGGDRD GKR +MG+IA  LAD  +VT DNPR+E
Sbjct: 354 HTPDALEKALSAVRAHTTGTLWCVFGCGGDRDAGKRELMGRIADQLADHLVVTSDNPRTE 413

Query: 424 DPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            PE+I   I  GI       + +R  AIR AI   + +DV+++AGKGHE    V   ++ 
Sbjct: 414 SPERIIEMIEQGICQHEPAIEADRAAAIRLAIMQASPEDVVLIAGKGHEDYQEVGT-KRY 472

Query: 482 MSVDCDIIREILGL 495
              D ++   +LG+
Sbjct: 473 PFSDLEVSMRLLGV 486


>gi|300715303|ref|YP_003740106.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
 gi|299061139|emb|CAX58246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
          Length = 471

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 157/472 (33%), Positives = 234/472 (49%), Gaps = 14/472 (2%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR   +G +FVAI G+  DG  FIPQAIAQG  A++  +    +D   T     P++ 
Sbjct: 3   LDSREAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIADAEGEAEDGDITEMHGVPVIY 62

Query: 95  VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    + LS  A R Y +  + +  + VTGT+GK++    + Q  Q  G +   +G    
Sbjct: 63  LAQLSQRLSALAGRFYQQPGDKLRLIGVTGTNGKTTTTQLLAQWGQLLGETGAVMGTVGN 122

Query: 153 ISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                      TT S + + + L  L  QG T  ++E SSHGL QHR+  +   A +FTN
Sbjct: 123 GLYGHLVPAENTTGSAVEVQQTLHSLVEQGATLAAMEISSHGLVQHRVAALPFAAAAFTN 182

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--- 268
           L RDH+DYH     Y  AK  LF E    +      ADD   +  +++  +A    +   
Sbjct: 183 LSRDHLDYHGDMARYEAAKWLLFSEHQVGQIIVN--ADDEVGRRWLQKLPDAVAVTMEDN 240

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G  G+++   +V    N  ++       + +    L G F V N LVA G  +A+G 
Sbjct: 241 IDPGCHGRWLQATEVDYHDNGAKIRFDSSWGEGEIESRLMGAFNVSNLLVALGTLLALGY 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               ++    +L  V GR E   +      + VDYAHT ++LE  L+  R   +G++  V
Sbjct: 301 PLDSLIATGNQLQPVTGRMEVF-SAPGKPTVVVDYAHTPDALEKALEAARLHCTGKLWCV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444
           FGCGGDRD+GKRP+MG IA   +D+ ++TDDNPRSEDP  I A+I+ G+           
Sbjct: 360 FGCGGDRDKGKRPLMGAIAEQFSDVVVITDDNPRSEDPAAIVADILSGLLDAGRARVMPG 419

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R +A+   +    + D+++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 420 RAQAVTNTVMQAQEGDIVLVAGKGHEDYQIVGNRRLDY-SDRITVARLLGVI 470


>gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 487

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 159/484 (32%), Positives = 236/484 (48%), Gaps = 14/484 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDI 416

Query: 433 IHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G   +        R +AI   I   +  DV+V+AGKGHE    + +G++    D    
Sbjct: 417 RPGFTAVDKVRFIEGRGQAIAELIASASADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475

Query: 490 REIL 493
            + L
Sbjct: 476 AKAL 479


>gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
          Length = 479

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 156/483 (32%), Positives = 233/483 (48%), Gaps = 19/483 (3%)

Query: 13  ELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L+  L    +Q  E +I   +  DSR I  G IFVA+ G   DGH FI  AI +GA+ I
Sbjct: 3   KLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLI 62

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS     Q            +++ N RK L + AS  YG   +NI  +  T       +
Sbjct: 63  IVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTT 115

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                         + G     I     +   TTP  + L + +     QG+ ++ +E S
Sbjct: 116 TYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIMEVS 175

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH L+  R++ ++     FTNL  DH+DYH+T + YF AK +LF +L  K    +   DD
Sbjct: 176 SHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKVL-NVDD 234

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y + + +  H         G +   +  K +     K++V +S+ GK  +    + G F
Sbjct: 235 EYGRRLQEEFHGIS-----YGTKQAEVQGKILGFEGGKEKVELSLFGKKKECKIQILGGF 289

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YN L +  L   +G+    +   +E L   PGRFE V        + +DYAHT ++LE
Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQ-DYMVVIDYAHTGDALE 348

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            IL+ I+ I + +II +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+PE I  
Sbjct: 349 NILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILE 408

Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           E+  G      I    R EAI   I    K D++++AGKGHET  I+   +K    D + 
Sbjct: 409 EVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQILGR-KKYHFDDREF 467

Query: 489 IRE 491
            R 
Sbjct: 468 ARR 470


>gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
 gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
          Length = 487

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 159/485 (32%), Positives = 239/485 (49%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY +   +    ++ P++ V    K LS  A R YG+     N++ VTGT+GK+SV   
Sbjct: 60  -AYEVDGATVLPITDVPLIPVKGLAKQLSDIAGRFYGEPSRHLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T      Q    TTP+PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T +AY  AK +LF     K     +  DD 
Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAWNDLKCRVVNL--DDE 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + + +  +   +     S+     +++ ++        + T+     +      L G F 
Sbjct: 237 FGRHLAAQDSESRLISYSLQDSSAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L  L KL    GR + +G   +   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAIGALLGLDYALDEILNVLPKLEGPAGRMQRLGGGEQPL-VVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R    G+++ +FGCGGDRD+GKRP+M +I   LAD  +VTDDNPR+EDP +I  +
Sbjct: 356 VLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRTEDPGQIFDD 415

Query: 432 IIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G            R  AI   I   +  DV+V+AGKGHE    + NGE+    D   
Sbjct: 416 IRAGFKDASKAAFVAGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGERHAFSDLVE 474

Query: 489 IREIL 493
               L
Sbjct: 475 ADHAL 479


>gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
 gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
          Length = 488

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 130/499 (26%), Positives = 224/499 (44%), Gaps = 24/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L+      L   + + P Q     ++++  DSR +Q   +FV I G   DGH + 
Sbjct: 1   MYAEELLSALP--LKKIIGVLPDQ-----VSDIVIDSRSVQPNSMFVCIKGYTVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+  GA  +V      L +           ++V +T + + L A++ +    +   ++
Sbjct: 54  QKAVDGGATIVVTERELPLGET-------IAQVIVKDTDRAVGLLAAKFFDYPSKDITMI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   +Q I    G  S   G      +    ++  TT   +   + +   
Sbjct: 107 GVTGTNGKTSVTGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRA 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFE 235
             +G   +++E SSHGL   RL G+      FTNL  DH+D+H T + Y +AK  +    
Sbjct: 167 KMEGCRLMTMEVSSHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQL 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++  ++   D    E              +  +                   + +
Sbjct: 227 GQDLEKNKFVVLNADDAWSERYAAMTPFPVWTYGLKNENADFRAINCEYHDYMTSFDVEM 286

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               +     L GEF +YN L A       G     ++E +E+L  V GR E V  +   
Sbjct: 287 PEGIYRVKMNLLGEFNIYNVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKV-CSELP 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +I++DYAHT +++E  ++  +    G++I + G GG+RD+ KRP M + A   A+  I+
Sbjct: 346 VQIFIDYAHTPDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKASA-AEYVIL 404

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T D+PR ED + I  ++  G+    +   G+R EA+R A+E+    D+++ AGKGHE   
Sbjct: 405 TTDDPRYEDYDSITGDLAKGMLHDNYACIGDRAEAVRHAVEIAEPGDMIIFAGKGHEDYQ 464

Query: 474 IVTNGEKKMSVDCDIIREI 492
           I+ N  K    D +I  E 
Sbjct: 465 IIEN-TKFPHSDAEIAIEA 482


>gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 495

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 150/511 (29%), Positives = 239/511 (46%), Gaps = 37/511 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L       +I+          + +I  + +DSR ++ G +F+ + G+  DGHLF 
Sbjct: 1   MKLKQLSSVLAAAVIDGSG-------DVEITGIETDSRQVKPGDLFICLPGHTVDGHLFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA  +GA A+VV     +         + P ++V ++R  ++  A+  + +      ++
Sbjct: 54  AQAAEKGAAALVVERKLEV---------DLPQVIVKDSRFAMAGLANTFFDQPSARMKMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I    GL +  IG       + +     TTP  + L + L+ +
Sbjct: 105 GVTGTNGKTTTTYLIETIMNDHGLKTGLIGTIQMKYGNQSFPMPRTTPEALELQRYLNDM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM------ 231
           ++ G     +E SSH L+Q R+ G       FTNL +DH+DYH T + Y  AK       
Sbjct: 165 ANAGTECCVMEVSSHALEQGRVKGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRL 224

Query: 232 -RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F +       A++ ADD  S    K                       +        
Sbjct: 225 GNAFAKDEKSRKYAVLNADDDASAYFAKITAAEVITYGLGEDADV--RASNISITAQGTS 282

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +       D    + G+F VYNA+ A    +  G+    +   LE +  V GR E V 
Sbjct: 283 FHVDTFRGSADISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVV- 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDYAHT + LE +L+ +     GR++ VFGCGGDRD+ KRPIMGKIA   +
Sbjct: 342 DEGQPYAVIVDYAHTPDGLENVLRTVNEFAEGRVLTVFGCGGDRDRTKRPIMGKIAAKYS 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+ +VT DNPR+EDP+ I  +I  G+         +    +R +AI  AIEM +  DV++
Sbjct: 402 DVVLVTSDNPRTEDPDLILKDIEAGLIEDGVAAESYNLIVDRRKAIEKAIEMASPGDVVL 461

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AGKGHET  ++  GE     D  + ++ + 
Sbjct: 462 IAGKGHETYQLIA-GEVLDFDDRIVAKDAIR 491


>gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 483

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 149/478 (31%), Positives = 238/478 (49%), Gaps = 15/478 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  I     +E +   +  DSR I+ G IFVA+ G   DGH +I QA+  GA+ ++VS  
Sbjct: 9   EYEILKDVAKEEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKK 68

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                           + + + RK L + AS  Y    + +  +  T       +     
Sbjct: 69  VEAAFP-------VKYIWIKDLRKKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIE 121

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                  + +IG     I     +   TTP  + + K       +G+ ++ +E SSH LD
Sbjct: 122 SILGSNKTARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEVSSHALD 181

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+D ++     FTNL  DH+D+H+T + YF AK +LF  +        +   D     
Sbjct: 182 LGRVDMLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYG- 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             KR  +    +    +    +  + V    + Q+V + ++         + G + VYN 
Sbjct: 241 --KRLSSEFGGISYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKLAILGRYNVYNV 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + + +GI+  +VLE +++L   PGR+E V        + VDY+HTS++LE ILK+
Sbjct: 299 LGAISIALLLGIEKEIVLERIKELKGAPGRYELVNCGQ-NFTVIVDYSHTSDALENILKS 357

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I  +  G++I VFGCGGDRD  KRP+MG+IA  L+DIAIVT DNPR+EDP KI  +++ G
Sbjct: 358 INELKKGKVITVFGCGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEG 417

Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +     I + +R  AI  A+E+  ++D++++AGKGHET  I+   +K    D +I R 
Sbjct: 418 MKGKNHIVEEDRDHAISKAVELAEEKDIILIAGKGHETYQILGR-KKIHFDDREIARR 474


>gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
 gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
          Length = 491

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 147/503 (29%), Positives = 241/503 (47%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  ++  A++ +DD  ++E M+                  I  K +         T
Sbjct: 225 GNSYNHNRKKYAVLNSDDPVAEEYMRSTAATVVTYGI--DVSSDIMAKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  D    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQ 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  ++I G     +    +R EAIR AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPVAILDDMIKGAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   E     D ++ +E +
Sbjct: 462 TYQIIG-KEVHHFDDREVAKEAI 483


>gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
 gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
          Length = 492

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 159/465 (34%), Positives = 229/465 (49%), Gaps = 13/465 (2%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ DSR +  G IFVA+ G + DG  +I QA+AQGA  ++  +  +  + S    S++ 
Sbjct: 29  HMTLDSRKVGEGDIFVALPGVQRDGRDYIKQALAQGAALVLAEA--NDFNISTDADSSSR 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           I+ V +    L   A   YG   + +  +AVTGT+GK+SV  FV Q+ +  G+ +  +G 
Sbjct: 87  IMRVPDLSAELPSLAKDFYGDPSQEMALVAVTGTNGKTSVVEFVGQLLRALGVEAGCVGT 146

Query: 150 TSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +    A  D   TTP  + +   L+    QG+ HV++EASSH L Q RL  + L  G 
Sbjct: 147 LGSRLEAAPADAMNTTPDVLTINHQLADWQHQGIKHVALEASSHALHQGRLASLSLHTGV 206

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH     Y  A  +L          AI  ADD  + +V+  A  +   + 
Sbjct: 207 FTNLTRDHLDYHGNAADY--AAAKLSLFNTFNLKRAIFNADDPVASQVLAVAGASAIGIT 264

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G +       +         + I       +    L G F  +N + A      +G D
Sbjct: 265 LEGAEAHVQVAIR---SMRPMLLEIQSPWGAAEINLALSGRFNAFNVVAAIVAVTGLGHD 321

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V    E L  VPGR E +  +       VDYAHT ++LE  L+ +R  T GR+ VVF
Sbjct: 322 FHRVCAAAESLKPVPGRMERILMSG-NRLAVVDYAHTPDALESALQTLRGETKGRLWVVF 380

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIE 447
           GCGGDRD GKR +MG+ A   AD  +VT DNPR E PEKI  ++I G         +R E
Sbjct: 381 GCGGDRDSGKRSLMGRSAARWADHIVVTSDNPRGEMPEKIIEDVISGCGNQAEVVVDRAE 440

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AIR A+ +    D ++VAGKGHE    +  G +    D  ++ E+
Sbjct: 441 AIRHALALAESGDTVLVAGKGHEDYQDIA-GVRLPFSDQRVLSEL 484


>gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
 gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
          Length = 495

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 240/502 (47%), Gaps = 20/502 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+          +     Q ++ ++  + ++S     G +F+ I G + DG  F 
Sbjct: 1   MNLRELLA--------VIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFW 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P A+A GA A ++S   + +       S+  ++   N  K  +   +  YG   E   I+
Sbjct: 53  PSALAAGAVAAIISPQAASKTSPT---SDALVITASNLNKVCAQVCAAFYGYPAEKLQIV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++ L +  +G        F+Q    TTP  I L   L+  
Sbjct: 110 GVTGTNGKTTTTHLIEYFLNQANLPAALLGTLYTRWPGFSQVANHTTPFAIDLQHNLAQA 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH L Q R+ G       FTNL +DH+DYHQ  + YF AK  LF   
Sbjct: 170 VDAGCQLGIMEVSSHSLAQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPD 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  A+I  DD Y + +            S+        +  +    +     +    
Sbjct: 230 -YLQGRAVINIDDQYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPE 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356
            +  F  PL G++ + N L A    + +G+D   V++++     VPGR E       +  
Sbjct: 289 GNSPFSSPLVGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQIDPHQDI 348

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GRII VFGCGGDRD+ KRP MG+IA DLAD+ +VT
Sbjct: 349 SVIVDYAHTPDSLENLLKAARPFIPGRIICVFGCGGDRDKTKRPKMGRIAADLADVVVVT 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+P+ I  +I+ G+P  +     G+R  AI TAI      D +++AGKGHE   
Sbjct: 409 SDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQ 468

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
           I+   EK    D +  R+ L L
Sbjct: 469 ILGT-EKIHFDDREQARDALHL 489


>gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15]
          Length = 485

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 232/476 (48%), Gaps = 14/476 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I+ + +DSR + +G  F+A+ G +     ++ +AIA GA  I++    + Q    T 
Sbjct: 12  DVTIHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLE---AQQAGECTE 68

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
                I+ V   R  +   A R +    + +  + VTGT+GK+SV  +V Q+ + +G   
Sbjct: 69  HHGALIVPVAGLRSLVGRIADRFFEHPSQRLRLIGVTGTNGKTSVCQYVAQLLKETGTPC 128

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G     +    Q    TTP  + + + LS +  Q      +E SSH LDQ R+D + 
Sbjct: 129 GILGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLS 188

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTNL RDH+DYH + +AY  AK +LF+      S      DD + +++ ++    
Sbjct: 189 MTGAVFTNLTRDHLDYHGSMEAYGAAKAQLFQREELHFSVINF--DDPFGRQLFEQLDGK 246

Query: 264 GCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             RV          + L++        +  +  E   F    PL G F   N L A    
Sbjct: 247 CDRVRYSLHEAQTELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAAMATV 306

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +G+    V + + +L   PGR E     + G R+ VDYAHT ++L   L  +R   +G
Sbjct: 307 LTLGVPIERVQQAVGRLTPPPGRLERF-VGANGVRVVVDYAHTPDALANALTALRPHVTG 365

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
            ++ VFGCGGDRD GKRP M + A  LAD  +VTDDNPRSEDPE I   I+ G       
Sbjct: 366 ELVCVFGCGGDRDAGKRPEMAREAERLADRVVVTDDNPRSEDPETIAEHILAGFTDAARV 425

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
               +R EAIR+ I      DV+++AGKGHE    +  G+K    D + +R +L L
Sbjct: 426 SVIHDRAEAIRSTIRSATPNDVVLIAGKGHEAYQEIA-GQKYPFSDAEQVRHVLKL 480


>gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 485

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 181/490 (36%), Positives = 262/490 (53%), Gaps = 14/490 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K    L +   + P + ++  +   + DSR +  G++F A  G K +G  FI +AIA 
Sbjct: 4   TEKKLGFLASGYGLSPKE-KDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFIEKAIA- 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                  + A ++             LV +N R   +  A+R Y   P  + AVTGT+GK
Sbjct: 62  -------AGAVAIVARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SVA   +Q+   +G  +  IG      +  +    +TTP  +      S L+   ++HV
Sbjct: 115 TSVAELCRQLWTITGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EASSHGLDQ+R DG K+IAG+FT+  RDH+DYH T + Y  AK+RLF+E +  +  A+
Sbjct: 175 IFEASSHGLDQYRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I+ADD  +  V+      G +++ +    + I L    A    Q +T+S++G+ +    P
Sbjct: 235 IWADDPAATTVIAHVQKRGLKLIDIWK-AEAIRLVNREADSQGQMITLSIKGESYKIRLP 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G +Q+ N LV AGL +A G D    +  L  L  V GR E    +  G  +YVDYAHT
Sbjct: 294 LIGGYQLSNGLVRAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGAEVYVDYAHT 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L   ++ +R  T G + VVFG GGDRD+GKRP MGKIA +LAD  IVTDDNPR ED 
Sbjct: 354 PDGLRAAIEALRPHTEGLLWVVFGAGGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 413

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE---KKM 482
             IR E++ G P   E G R EAI +AI+   K D++++AGKGHE   I+  GE      
Sbjct: 414 ATIRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKGHEQGQIIGRGETMRVLP 473

Query: 483 SVDCDIIREI 492
             D  + +E 
Sbjct: 474 FDDVTVAKEA 483


>gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Laribacter hongkongensis HLHK9]
 gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9]
          Length = 491

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 150/467 (32%), Positives = 218/467 (46%), Gaps = 15/467 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+SDSR +  G +F+A  G   DG  +I  AI++GA A+    A   +        N P 
Sbjct: 26  VTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPADGFEWQPGWTVPNLP- 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             V + R    + AS L G+  E   ++ VTGT+GK+S+ +++ Q     G  +  IG  
Sbjct: 85  --VPDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAALIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    D   TTP P+ + + L+    QG   V++E SSHGLDQ R++G+      F
Sbjct: 143 GNGFFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFGTAVF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH +  AY   K RLF     +   A+I  DD + +E+  R          
Sbjct: 203 TNLTRDHLDYHGSMAAYGATKERLFHWQGLQH--AVINVDDQFGRELASRCTAGQVITY- 259

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G +   +    V A      + ++             G F   N L    +    G+  
Sbjct: 260 -GLEHGDVRPMAVHASLEGLAMELATPWGHGRIESAFLGRFNASNLLACLAVLCVNGVPL 318

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVV 387
                 L ++    GR + VG       + +DYAHT ++LE  L  +  I    GR+  V
Sbjct: 319 TQACRVLGQIQPARGRMQRVGGTREPL-VVIDYAHTPDALEKALSTLADIKPAGGRLFAV 377

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRI 446
           FGCGGDRD+GKRP+MG IA   AD+ +VT DNPR+E P+ I  +I+ G+      + +R 
Sbjct: 378 FGCGGDRDRGKRPLMGDIAERFADVTVVTSDNPRTESPQVIIDDILAGMRQPTQVEPDRR 437

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            AI  A+      DV++VAGKGHE    +  G K    D       L
Sbjct: 438 AAIHWAVAQARVGDVVLVAGKGHEDYQDIQ-GVKHSFSDVREAEAAL 483


>gi|188532897|ref|YP_001906694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
 gi|188027939|emb|CAO95796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
          Length = 495

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 165/503 (32%), Positives = 243/503 (48%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+DL+    P              ER + E++ DSR   +G +FVAI G+  DG  FIP
Sbjct: 5   KLRDLLAPWVP-----------GAPERALREMTLDSRVAASGDLFVAIKGHAADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A++  +    +D         P++ +    + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAVIAEAEGEAEDGQIVETHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +   +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A +FTNL RDH+DYH     Y  AK  LF E  
Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAEHQ 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHN----AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AII ADD   +  +++  +         L  G  G+++   KV       +V  S
Sbjct: 234 VGQ--AIINADDKVGRRWLEKLPDAVAVTMENHLQPGCHGRWLKATKVDYHDGGARVHFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + D    L G F V N LVA    +++    A +     +L  V GR E   +   
Sbjct: 292 SSWGEGDIDSRLMGAFNVSNLLVALATLLSLDYPLAALTATASQLQPVTGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALTAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQCADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSEDP  I ++I+ G+           R +A+   +    + D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEDPAAIVSDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ +       D D +  +LG
Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLG 492


>gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 479

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 158/483 (32%), Positives = 235/483 (48%), Gaps = 19/483 (3%)

Query: 13  ELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L+  L    +Q  E +I   +  DSR I  G IFVA+ G   DGH FI  AI +GA+ I
Sbjct: 3   KLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKLI 62

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS     Q            +++ N RK L + AS  YG   +NI  +  T       +
Sbjct: 63  IVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTT 115

Query: 132 FVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                         + G     I     +   TTP  + L + +     +G+ ++ +E S
Sbjct: 116 TYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVS 175

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH L+  R++ ++     FTNL  DH+DYH+T + YF AK +LF + L  ++  I+  DD
Sbjct: 176 SHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLK-LRGKAIKILNVDD 234

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y K + +  H         G QGK      +     K++V +S+ GK  +    + G F
Sbjct: 235 EYGKRLQEEFHGISYGTKQAGVQGKI-----LGFEGGKERVELSLFGKKKECKIQILGGF 289

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YN L +  L   +G+    +   +E L   PGRFE V        + +DYAHT ++LE
Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQ-DYMVVIDYAHTGDALE 348

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            IL+ I+ I + +II +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+PE I  
Sbjct: 349 NILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENPESILE 408

Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           E+  G      I    R EAI   I    K D++++AGKGHET  I+   +K    D + 
Sbjct: 409 EVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQILGR-KKYHFDDREF 467

Query: 489 IRE 491
            R 
Sbjct: 468 ARR 470


>gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 495

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 249/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+     +              R + E+  DSR   AG +FVAIVG+K DG  +IP
Sbjct: 5   NLRDLLAPWVQD-----------TPARALREMILDSRVAAAGDLFVAIVGHKADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AIV  +     D +       P++ + N  + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G         A     TT S + + + LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   ++Y  AK  LF E  
Sbjct: 174 DQGATFAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFSEHR 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTIS 294
             +      ADD      + +  +A    +      G +G+++   ++    N   V   
Sbjct: 234 VGQMVIN--ADDEVGLRWLAKLPDAVTVTMENNLVPGCRGRWLKATQIDYHDNGATVAFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +    L G F V N L+A    +++G     ++    +L  V GR E     ++
Sbjct: 292 SSWGHGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLIIAGSQLQPVCGRMEVFHAEAK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +
Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPRSE+P+ I A+I+ G+           R EA+ +AI    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             +V N       D   +  +LG+I
Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494


>gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
 gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
          Length = 487

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 160/504 (31%), Positives = 247/504 (49%), Gaps = 33/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++YK   E +   +          + E+  DSR +Q   +F+AI G + DGH +
Sbjct: 1   MKTLKDILYKVHIEAVTGDTT-------IAVRELVFDSRKVQLNDVFIAIKGYEVDGHSY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +AI  GA A++        +    I +    + VDN    L++ AS  YG   E   +
Sbjct: 54  IEKAIKAGAIAVICE------EIPKNIINGITYVQVDNGSSALAVMASNYYGNPSENLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++A+ + Q+ +++G     +      +         TTP  + +   L  
Sbjct: 108 IGVTGTNGKTTIATLLYQLFKKAGYKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQK 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +GV +  +E SSHG+ Q R  G+    G FTNL  DH+DYH T   Y + K + F+E
Sbjct: 168 MNHEGVEYCFMEVSSHGIHQKRTAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPKE+  ++  DD     +M+             Y      + +           + ++
Sbjct: 228 -LPKEAFCLVNIDDKNGLVMMQNTKAKKYTYALKTYADYRAQILENRLAG------LLLK 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +    L G F  YN L        +G++   +L  + +L  V GRFE    +    
Sbjct: 281 INDNEVWTKLIGSFNAYNLLSIYATAELLGLEEIEILRLISELESVSGRFE-YFISKNKI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L+ I  I +G    I V GCGGDRD  KRP MG IA  L+  AI
Sbjct: 340 TTIVDYAHTPDALKNVLETINNIRTGNEQLITVVGCGGDRDTTKRPKMGNIASTLSTKAI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPRSEDP  I   I  G+        +   +R +AI+TA +M N+ D++++AGKGH
Sbjct: 400 FTSDNPRSEDPMTIIEAIEKGVEPQNYKKTLSITDRKQAIKTACQMANENDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NG++    D  I +EIL
Sbjct: 460 ETYQEI-NGKRSDFDDYKIAKEIL 482


>gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
 gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
          Length = 484

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 160/503 (31%), Positives = 249/503 (49%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++LI     E+++            ++N ++ DSR  ++G +FV + G K DGH FI
Sbjct: 1   MLLKELIKDL--EIVDVTGDL-----NLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           PQAI  G  A++V     + +          ++ VD+TR  L+  A + +G      N++
Sbjct: 54  PQAIENGTRALLVQREVEVPE-------GITVIRVDDTRYALASVADKFHGHPSGDFNLV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ I +  G  +  IG   + I         TTP    L +    +
Sbjct: 107 GVTGTKGKTTTTYMIKSILEMYGQKTGLIGTISNKIGDEVLPTDRTTPESYDLQELFGEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V  V +E SSH LD HR+   +   G FTNL RDH+D+H+T + Y  AK++LF+  
Sbjct: 167 VEKQVNSVVMEVSSHALDLHRVSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKLFKMC 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                                  +               I    +    +  +  +    
Sbjct: 227 KKGLINV------DSEYGRKVVENAECEVYTFGIDSSADIRAVDIVKHPDSVEFKVITPW 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    +PG+F VYNAL A G C  +GI    + + L+ + V PGR E V T +    
Sbjct: 281 FTGDIAVNIPGKFSVYNALGAIGSCALMGIPLEYIQKGLKNVTV-PGRAEVVQTGT-DYT 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +DYAH+ +SLE IL  ++     R+I +FGCGGDRD+ KRPIMG+I+  LAD  ++T 
Sbjct: 339 IIIDYAHSPDSLENILTTVKGYAPARVISLFGCGGDRDKTKRPIMGEISGKLADFTVITS 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+E+P  I  +I  GI      +I   +R EAI+ A++    +D++V+AGKGHET  
Sbjct: 399 DNPRTEEPAAIINDIEEGIKKTTSAYITIVDRREAIKYAMQHAQPKDIIVLAGKGHETY- 457

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+ N +     + +++REIL  +
Sbjct: 458 IMLNDKTIHFDEREVVREILDEM 480


>gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 487

 Score =  316 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 153/501 (30%), Positives = 244/501 (48%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   E +   +          I  +  DSR +    +FVA+ G + DGH +I +
Sbjct: 4   LKDILYKVTLETVVGNTA-------VAITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+ QGA AI+        +    I +    + V +T   L+  AS  YG       ++ +
Sbjct: 57  AVNQGALAIICE------ELPEQIVNGITYVKVADTSSALATIASNFYGNPSANLKLIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS + Q+ Q++G  +  +     +          TTP  + + K L+ +S 
Sbjct: 111 TGTNGKTTIASLLYQLFQKAGYKTGLLSTVKILVDKTEYKATHTTPDSLTINKYLAEMSE 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV +  +E SSHG+ Q R +G++   G FTNL  DH+DYH T   Y + K + F+E LP
Sbjct: 171 AGVEYCFMEVSSHGIHQKRTEGLRFEGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDE-LP 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K + A++  DD     +++             Y      + +           + ++ +D
Sbjct: 230 KTAFALVNTDDKNGAVMVQNTKAKKVTYALKSYADYKAQILENQLSG------LLLKIQD 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L        +G+D    L+ L +L  V GRF+    +       
Sbjct: 284 QEVWVKLIGSFNAYNLLAIFATAELLGLDQIEALKLLSELESVSGRFQ-YFISEGNVTAI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I  I +     I V G GGDRD  KRP MG IA  L+   I+T 
Sbjct: 343 VDYAHTPDALKNVLETINDIRTKNEELITVVGAGGDRDTTKRPKMGHIASALSTKTIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPRSE PE I  ++  G+        +   +R +AI+TA ++ N  D++++AGKGHET 
Sbjct: 403 DNPRSEKPEAIIEQVEAGVEPINYKKILSITDRKQAIKTACQLANPGDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  GE+    D  I++E L
Sbjct: 463 QEIM-GERFDFDDYKIVQETL 482


>gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 496

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 164/493 (33%), Positives = 237/493 (48%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ + +   ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G               TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       A
Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A    +      G+ G ++   +V    N   +       +     
Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +++G     +L     L  V GR E          + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALVAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI      DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILG 494
              D   +  +LG
Sbjct: 481 Y-SDRVTVARLLG 492


>gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 498

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 159/499 (31%), Positives = 250/499 (50%), Gaps = 26/499 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E++  + +       E ++  ++ DSR    G++FVA+ G + DGH +I  A+  GA 
Sbjct: 3   FGEILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAV 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A+++     L D+            V ++RK L+L ++R Y        ++ VTGT+GK+
Sbjct: 63  AVILQKDMILPDY-------IAWARVPDSRKALALLSARFYNYPSRRLKMIGVTGTNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A  ++ + + +G  +  IG   + I     + + TTP    L   LS +   GV  V+
Sbjct: 116 TTAHLIESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVA 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-----PKE 241
           +E SSH L+ HR+DG +     FTNL +DH+D+H+  + Y  AK  LF  L         
Sbjct: 176 MEVSSHALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGA 235

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AII ADD  +  + + +         V         + +    +    T++       
Sbjct: 236 KYAIINADDEAAARLTRLSGGQVITYGMVKKADII--AENITVRADGASFTVASRQGKVT 293

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+F VYNAL A  + +  G    ++   LE +  VPGRFE V    +   + VD
Sbjct: 294 INLNLTGKFNVYNALAAYSVGMVSGFSPQVIKHALEGVKGVPGRFELV-DEGQDFAVIVD 352

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + L  IL   R  T+G++I VFGCGGDRD+ KRP+MG+I+  L+D  IVT DNPR
Sbjct: 353 YAHTPDGLRNILNTAREFTAGKLINVFGCGGDRDRTKRPLMGEISGRLSDFTIVTSDNPR 412

Query: 422 SEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            ED ++I  +I+ GI   +E        +R  AI+ A+      DV+++AGKGHET  I+
Sbjct: 413 REDADRIILDILVGISRVVERDYYTIISDRRAAIKAALAQAASGDVVIIAGKGHETYQII 472

Query: 476 TNGEKKMSVDCDIIREILG 494
            +  +    D + +R+ L 
Sbjct: 473 GD-VRYAFDDREEVRQALR 490


>gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
 gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
          Length = 462

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 147/475 (30%), Positives = 232/475 (48%), Gaps = 25/475 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  V+ DSR I  G +F+A+ G + DGH +IP AI +GA A++        +    +++
Sbjct: 2   EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLCE------ELPEELKA 55

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V ++   +   A+  YG     +  + VTGT+GK++VA+ +    +  G     
Sbjct: 56  GITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFGYKVGL 115

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +    + I         TTP PI L + L  ++  G  +  +E SSH + Q R+ G+K  
Sbjct: 116 VSTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGLKFA 175

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G FTNL RDH+DYH+T + Y  AK + F+E LPK + ++   DD     + +   +   
Sbjct: 176 GGIFTNLTRDHLDYHKTVENYLKAKKKFFDE-LPKGAFSLTNLDDKNGLVMTQNTRSKVY 234

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                        + +              +  + +      G+F  YN L   G  + +
Sbjct: 235 TYSLRSLSDFKGKVLESHFEGMLL------DFNNHELAVRFIGKFNAYNLLAVFGTAVLL 288

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGR 383
           G     VL  L  LH V GRF+    + +G    VDYAHT ++L  +L  I  +    G+
Sbjct: 289 GKKEEDVLVALSTLHPVTGRFD-AIRSPKGYTAIVDYAHTPDALVNVLNAIHGVLEGKGK 347

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----G 438
           +I V G GG+RD+GKRPIM K +  L+D  I+T DNPR E+P+ I  +++ G+       
Sbjct: 348 VITVVGAGGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLAGLDKDDMQK 407

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            I   +R EAI+TA  +    DV++VAGKGHE    +  G K    D +I+ EI+
Sbjct: 408 TISITDRREAIKTACMLAQPGDVILVAGKGHENYQEIK-GVKHHFDDKEILNEIM 461


>gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
 gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
          Length = 486

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 147/504 (29%), Positives = 234/504 (46%), Gaps = 32/504 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++Y    E +       +   E +I+++  DSR +  G +FVAI G + DGH F+  
Sbjct: 4   LKDILYGVAIEQV-------VGSTEIEISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKD 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
               GA+A +V +          I      + V N+   L + AS  Y        ++ V
Sbjct: 57  VTENGAKAAIVET------LPEVIAEGVTYIKVANSATALGVVASNFYHNPSSKLKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V + + ++ ++ G +   +    + I+        TTP  I L + L+ +  
Sbjct: 111 TGTNGKTTVCTLLYKLFKKLGYNVGLVSTVENYINDLVVPATHTTPDQIALNQLLNRMVD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G  +  +E SSH + QHR+DG++   G FTN+  DH+D+H+T   Y  AK   F + L 
Sbjct: 171 AGCEYCFMEVSSHSVVQHRIDGLEFAGGVFTNITHDHLDFHKTFDNYIKAKK-GFFDNLT 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            ++ A+   DD     +++                    + +           + ++   
Sbjct: 230 SKAFALTNVDDRNGNVMLQNTRAHKKTYALNAVADFKAKIIENLFSG------LHLDIDG 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +  F L G F  YN L   G  + +  D   VL  L  L    GRF+            
Sbjct: 284 MEVYFRLVGSFNAYNLLAVYGTALLLEQDRTKVLTVLSMLTGAEGRFD-YIIAPNKVIGI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L  IL  I  I+SG   II V GCGGDRD+ KRPIM + A D +   I+T 
Sbjct: 343 VDYAHTPDALRNILSTIENISSGTESIITVVGCGGDRDREKRPIMAQTACDWSHKVILTS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+E PE I  +++ G+        +   +R EAI+ A  +    D++++AGKGHE  
Sbjct: 403 DNPRTEKPEDILNDMLAGVSAVNQKKVLTILDRREAIKAACHLAKPGDIILLAGKGHEKY 462

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
             + NG +    D  I+ E   L+
Sbjct: 463 QEI-NGVRTDFDDKQILTEQFNLL 485


>gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
 gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
          Length = 532

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 154/520 (29%), Positives = 242/520 (46%), Gaps = 40/520 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+ +        + +      +  I+ +  DSR + +G +FV  +G   DGH F+
Sbjct: 1   MTLTELLDE-----AKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           PQA  QGA  IV +    + +          +++V +T   LS  A   YG+  E+  ++
Sbjct: 56  PQAAEQGAVVIVATKEVEIGESVKA------VVIVSDTNSILSALAGAFYGRPSESLAVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176
            +TGT+GK++ +  ++ I +  GL +  IG  S        QD   TTP  +YL K ++ 
Sbjct: 110 GITGTNGKTTTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMAT 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +         +E SSH L Q R   I      FTNL RDH+DYH+ + +Y  AK +LF  
Sbjct: 170 MVHNRTEVCVMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFAS 229

Query: 237 LLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           ++       ++  DD  +   +   +     V     +   +H   +     +  V +  
Sbjct: 230 MVDPARHRKVVNIDDPNAGYFVSLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              + +    L G   VYN L A  + IA+      ++  +E++  VPGR E V    + 
Sbjct: 290 PRGNIEISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV-DEEQP 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++L  +L  +R     RII V GCGGDRD+GKRP+M KIA   +++ I 
Sbjct: 349 FAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIF 408

Query: 416 TDDNPRSEDPEKIRAEIIHGI----------------------PGFIEKGNRIEAIRTAI 453
           T DNPRSEDP +I  +++ G+                              R  A+R A+
Sbjct: 409 TSDNPRSEDPLEILDDMLAGVGWSMDEYLKCGERSYYPPIWNGNRVFVYDLRKIAVRAAV 468

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            M  + D +V+AGKGHE   I+   E+K   D +  RE L
Sbjct: 469 AMGEEGDAVVIAGKGHEKYQIIG-KERKYHDDREECREAL 507


>gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
 gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
          Length = 494

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 157/495 (31%), Positives = 240/495 (48%), Gaps = 10/495 (2%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L       L   L I   +     +  +  DSR +  G  FVAI G+  DG  FI  A
Sbjct: 3   KELTLATL--LAPWLDISTDESANVVVERLELDSRKVTQGTTFVAIKGHAVDGRRFINSA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA AI+  +            S   I+ +D   + LS  AS LY      ++ VTGT
Sbjct: 61  IELGANAIIAEACELHPHGKVERSSGVSIVYLDQLAQHLSALASLLYPLSDNKLIGVTGT 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+++   + Q     G  +  +G T     +  Q    TT + I + + L  L  QG 
Sbjct: 121 NGKTTITQIMAQWLDLIGHKAAVMGTTGNGFLADLQPAANTTGNAIEIQQTLHQLQQQGA 180

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + ++E SSHGL Q R+  +    G F+NL RDH+DYH T + Y  AK  LF++      
Sbjct: 181 QYTALEVSSHGLVQGRVKTLPFEVGVFSNLSRDHLDYHGTMEEYAEAKFSLFDQHT--CK 238

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD      +KR  +A    L+     + +  + V        + I       +F
Sbjct: 239 TAVINIDDQVGASWVKRLDSAIAVSLNPTDHPRAVWAESVSYSEAGISLVIDGLFGRGEF 298

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L GEF   N L+A    +A+G+D   +L+    L  V GR E    +    ++ VDY
Sbjct: 299 TIALIGEFNASNVLLALTALLALGVDKQQLLDTASSLKPVLGRMELFTAS-DKAKVVVDY 357

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  LK +R    G++  +FGCGGDRD GKRP+M  I  +LAD  I+TDDNPRS
Sbjct: 358 AHTPDALEKALKALRVHCHGKLWGIFGCGGDRDTGKRPMMAAIGEELADKVILTDDNPRS 417

Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E P  I  +++ G+      I + NR +A++ A+    +QD++++AGKGHE   ++ +  
Sbjct: 418 ESPAAIVEDMLKGMNEPELAIVEHNRFDALKYALAHSGEQDIILLAGKGHEDYQVMADKT 477

Query: 480 KKMSVDCDIIREILG 494
                D +  +++L 
Sbjct: 478 IHY-SDRESAQQLLE 491


>gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia canadensis str. McKiel]
 gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel]
          Length = 478

 Score =  316 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 157/485 (32%), Positives = 257/485 (52%), Gaps = 23/485 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L      +++  I  +S++S++I+ G +F A+ G   DG+ FI  A+ +GA  ++  +  
Sbjct: 2   LFNLKQLFQQHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNKGAVLVITDNEK 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +             ++ V++ +K L       Y K P++++AVTGT+GKSSV S++ Q+ 
Sbjct: 62  NTAINK--------VIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVISYIAQLY 113

Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              G  +  IG          +       LTT   +   K    L+  G+ +++ EASSH
Sbjct: 114 SLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYLAFEASSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RL   K+    FT+   DH+DYH T++ Y  AK++LF   L   + +I+ +D   
Sbjct: 174 GLDQTRLGENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAISILNSDIEE 233

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + +    +    + ++VG +G    + ++ +    Q +  +   + + F  P+ G FQ 
Sbjct: 234 IEFIKAYLNKHNIKFITVGIKGDL-QITRINSSLKGQNIDFTFNNRKYSFNTPIIGSFQA 292

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+AA      G+    V+  L  +  V GR +          I+VDY+HT ++LE  
Sbjct: 293 SNLLIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQ----IENTNIFVDYSHTPDALEKA 348

Query: 373 LKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L  ++ I     ++ V+FGCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRA
Sbjct: 349 LLELKNIQVLGSKLNVIFGCGGNRDKKKRSLMGQIAAKLADNVIITDDNPRLEDPKLIRA 408

Query: 431 EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           EII GI    +IE  NR +AI+  I  LN+ D+L++AGKGHE   I+ N +K    D +I
Sbjct: 409 EIISGIDKANYIEIENREKAIKYGINNLNQDDILLIAGKGHENYQIIGN-KKIPFDDAEI 467

Query: 489 IREIL 493
           +++ +
Sbjct: 468 VKKYI 472


>gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0205]
          Length = 503

 Score =  316 bits (808), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 152/499 (30%), Positives = 236/499 (47%), Gaps = 19/499 (3%)

Query: 11  FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+ ++ +  P       +  VS DSR +  G +FV + G   DG  F P+A+  GA 
Sbjct: 5   LHSLLREVGLAVPPGLGNGDVQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQLGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENI--LAVTGTSGK 126
             V+  + +     A       +LVV +   ++  L A+  + +  +    + VTGT+GK
Sbjct: 65  LAVIGRSAAEARPPA---DGDAVLVVSDPVSRWAGLLAAEFWQQPSQRTALIGVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ +    G  +   G   +     +   + TT     L   L+  +  G    
Sbjct: 122 TTTTYLLEHLASACGYPAALFGTLINRWPGHSITAQHTTAFADELQAQLALAAESGARIA 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-PKESPA 244
           ++E SSH LDQ R+ G +     FTNL +DH+DYH + +AYF AK +LF   L   E+ A
Sbjct: 182 AMEVSSHALDQQRISGCRFAGAIFTNLTQDHLDYHPSMEAYFEAKAKLFAAPLLAPEARA 241

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD + K++ +R  +   R          + ++ +         T+        F  
Sbjct: 242 VVNVDDPWGKQLAERLGDRCWRASLEPDSDADLRMEALQMGSQGVSGTLITPLGRGAFSS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI------ 358
           PL G+F + N L A G+ +  G+    +LE L     VPGR E V               
Sbjct: 302 PLLGKFNLMNLLEAVGVLLQQGLPLGAMLEALGSFKGVPGRMERVQVARADCGDAAAPAV 361

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE  LK  R    G++I VFGCGGDRD+ KRP M  IA  LAD  +VT D
Sbjct: 362 LVDYAHTPDGLESALKACRPFVEGQLICVFGCGGDRDRTKRPQMAAIAARLADQVLVTSD 421

Query: 419 NPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDPE+I  +++ GIP         +R ++I  AI M   +D++++AGKGHE   I+
Sbjct: 422 NPRTEDPEQILKDVLAGIPEGTPVQVDVDRAQSIAAAIAMAGPKDLVLIAGKGHEDYQIL 481

Query: 476 TNGEKKMSVDCDIIREILG 494
              +K    D +   + L 
Sbjct: 482 GT-KKVHFDDREEAEKALR 499


>gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 487

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 157/484 (32%), Positives = 233/484 (48%), Gaps = 14/484 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G   DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  S    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSSVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNMVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDLLGQHCGIVGTLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   I       TNL RDH+DYH T +AY  AK +LF           +  DD +
Sbjct: 180 GLDQGRATAIAFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWPNLNCRVINL--DDEF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +++    H +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRKLATLKHESRLITYSQLDSAAYLYCRDARFDDDGVRATLVTPQGEHFLRSALLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GASKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPR+E P +I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRNEPPSQIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G            R +AI   I   +  DV+V+AGKGHE    +  G++    D    
Sbjct: 417 RPGFVAADKVRFVEGRGQAIAELIASASADDVVVLAGKGHEDYQEIA-GQRHPFSDLQEA 475

Query: 490 REIL 493
            + L
Sbjct: 476 AKAL 479


>gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 484

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 149/496 (30%), Positives = 237/496 (47%), Gaps = 26/496 (5%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +   E++N +    +Q  +  +I+ +  DSR +  G +FVA+ G   DGH +I QAI  G
Sbjct: 2   RYLSEILNGIPATELQGADDMQISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A AIV        D  A        ++V ++   L   A+  Y    +   ++ VTGT+G
Sbjct: 62  AVAIVCE------DLPAHTIGEVAFMMVADSAVALGQIAANFYDHPSDKLKLVGVTGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++VA+ + Q+    G     +    + I+        TTP  + L   L+ + +QG  +
Sbjct: 116 KTTVATLLYQLFHDLGYKCGLLSTVENQINGKVIPATHTTPDQVVLNSLLNDMVNQGCDY 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH + QHR++G++   G FTNL  DH+DYH+T   Y  AK   F + LPK + A
Sbjct: 176 CFMEVSSHAVAQHRIEGLQFSGGIFTNLTHDHLDYHKTFDNYLKAKK-AFFDALPKSAFA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD     +++                    + +           + ++  + +  F
Sbjct: 235 LTNIDDRNGNIMLQNTRAQRKTYALKSLADYKAKILENQFGG------LLLDIDNEEVWF 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G F  YN L   G    +G D   VL  L KL    GRF+    +       VDYAH
Sbjct: 289 KMVGSFNAYNLLAVYGAARLLGQDKTKVLTSLSKLKGAEGRFD-YIISPNKVIGIVDYAH 347

Query: 365 TSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++++ +L  I  I  G  ++I + GCGGDRD+ KRPIM K+A   +D  I+T DNPRS
Sbjct: 348 TPDAVQNVLSTIHDIRKGTEKVITIIGCGGDRDKTKRPIMAKVACQWSDKVILTSDNPRS 407

Query: 423 EDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           E PE+I  ++  G+        I   +R EAI+TA  + +  D++++AGKGHE    V  
Sbjct: 408 EVPEQIIRDMEAGVDAEGKKKTISITDRHEAIKTACHLASPGDIILLAGKGHEKYQEVK- 466

Query: 478 GEKKMSVDCDIIREIL 493
           G +    D + + +  
Sbjct: 467 GVRSHFDDKEELIKAF 482


>gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 511

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 208/491 (42%), Positives = 279/491 (56%), Gaps = 21/491 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D             +  E ++  V+SDSR + +G +F A+ G   DG  +I
Sbjct: 27  MKLRELFSDDVA--------IAAEASEIEVRGVASDSRAVLSGEVFFALAGANTDGARYI 78

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAIA GA A+V                   ++ V N R+ L+L A+R++ + P  I AV
Sbjct: 79  DQAIANGAVAVVGEQFPDSDHR-------VALVRVANPRRALALAAARMFPRQPATIAAV 131

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G ++  IG         +    LTTP PI L + +  ++ 
Sbjct: 132 TGTSGKTSVAAFTRQIWQRLGFAAASIGTIGLVTPQRSVYGSLTTPDPIALHREIDQIAG 191

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ RLDG+++ A  FTNL RDH+DYH     Y  AK+RLF +L+ 
Sbjct: 192 EGVTHLALEASSHGLDQFRLDGVRVSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVI 251

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVE 296
               A+I AD  +S+ V+  A   G R+++VG  G       L         Q++T+   
Sbjct: 252 DGGAAVISADHEHSEAVIAAARARGLRLITVGRNGNRQDGIRLIGATIDGFAQRLTVEFR 311

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G++     PL GEFQ+ NALVAAGL I  G D+  V   L+ L    GR E VG    G 
Sbjct: 312 GRERGLRLPLVGEFQIENALVAAGLAIGTGGDAEQVFAALQHLEGAKGRLELVGDR-NGA 370

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I+VDYAH  ++L   L+ +R     ++IVVFG GGDRD GKRP+MG IA  LAD  IVT
Sbjct: 371 PIFVDYAHKPDALAKALQALRPYAKRKLIVVFGAGGDRDAGKRPLMGAIATGLADSVIVT 430

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRA I+    G +E G+R EAIRTAI  L   D L++AGKGHET  I+ 
Sbjct: 431 DDNPRSEDPAAIRAAIMAAAGGAVEIGDRAEAIRTAIGALQSGDALLIAGKGHETGQIIG 490

Query: 477 NGEKKMSVDCD 487
            G      D +
Sbjct: 491 -GRVLPFSDHE 500


>gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
 gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
          Length = 485

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 211/498 (42%), Positives = 277/498 (55%), Gaps = 23/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +       E  +  +++DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLRELFGDD--------AAMDAPGGELAVTGLAADSRAVKLGDLFFALAGTKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA AIV   A +            P +   N R+ L+L A+R Y + P  I AV
Sbjct: 53  DAAIASGAVAIVGEHAPAT--------GRVPFIATPNPRRALALAAARFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG       S      +TTP PI L + L  L+ 
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVTPSRTVYGSVTTPDPIELHRELDQLAG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+RLDG+++ A  FTNL RDH+DYH T   Y + K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
            +  A+I  D   S  V++ A+    RV+ VG +       I L +       Q+VT+  
Sbjct: 225 PDGIAVISTDHDCSHTVIEAANARKVRVMRVGRRSDGALAGIRLVEAAIEDFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D   V   LE L    GR E VG    G
Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGSDPDQVFAALEHLEGARGRLELVG-EHNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++VDYAH  ++L   L  +R     +++VVFG GGDRD GKRP+MG IA D AD+ IV
Sbjct: 344 APVFVDYAHKPDALAKALLALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+    G  E G+R EAIR AI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEDPAAIRAAILAAARGACEIGDRAEAIRGAIAGLQPGDALLIAGKGHETGQIV 463

Query: 476 TNGEKKMSVDCDIIREIL 493
            +       D +     L
Sbjct: 464 GD-RVLPFSDHEAAVAAL 480


>gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
 gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
          Length = 512

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++ 
Sbjct: 28  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 87

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 88  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 445 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503

Query: 489 IREILGL 495
            +++L L
Sbjct: 504 AQQLLEL 510


>gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 492

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 144/492 (29%), Positives = 226/492 (45%), Gaps = 20/492 (4%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L   L    +    +++  +  DSR +  G +FVAI G++ DG  FI +AI  GA AI
Sbjct: 2   RDLKAILKYIEIDAPSQQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIENGAVAI 61

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +       +          P+ +V    K L   ASR Y +    +  + VTGT+GKS+ 
Sbjct: 62  IADRLCEFETSFE------PLYLVSELTKKLPELASRFYQQPSHMLDLIGVTGTNGKSTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            + +  + Q     S  IG               TTPS + L + L+ L  Q    V++E
Sbjct: 116 TAMIAHLAQFCNSQSAIIGTLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLVAME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+   +  A  FTNL RDH+DYH     Y +AK+ LF++   +    ++  
Sbjct: 176 VSSHGLVQQRVAQCQFKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKD--FEPELVVLNQ 233

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD  + + +++                   +F++   V          ++    D     
Sbjct: 234 DDGQTDQWLEKYSFNSLVCYGRKNLPPKNAQFVYFSDVTYSAQGIAAQLTTSWGDIAIKS 293

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL GEF +YN   A    + +G   A ++    +L  V GR +      +     VDYAH
Sbjct: 294 PLFGEFNLYNLTAALATLLGLGYPLAQLIAGCAQLQPVAGRMQAFSAKGKPTC-IVDYAH 352

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T  +L + L+ ++    G +  VFGCGGDRD+GKR +M + A   AD  I+T DNPRSE+
Sbjct: 353 TPEALALALQALQQHVPGGVSCVFGCGGDRDKGKRALMAQAAEQNADKVIITSDNPRSEN 412

Query: 425 PEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A++  G+        + +R  AI  AI      +V+++AGKGHE   I+ +    
Sbjct: 413 PDAIIADVAQGLAQPTKAYLEADRATAISYAISNAKADEVILIAGKGHEDYQIIGDQRID 472

Query: 482 MSVDCDIIREIL 493
              D   +++ L
Sbjct: 473 -FCDRRYVQQQL 483


>gi|320540410|ref|ZP_08040060.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
 gi|320029341|gb|EFW11370.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
          Length = 495

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 166/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P               R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLGPWVPT-----------APRRALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A++  +    +D +       PI+ +    + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAVIAEANGQAEDGAIVEMHGVPIIYLSQLNQRLSALAGRFYHQPAERLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G       +       TT S + L   L+ L+
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLNHVCPAENTTGSAVDLQHQLNDLA 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  F+NL RDH+DYH     Y  AK  LF    
Sbjct: 174 EQGATFAAMEVSSHGLVQHRVAALPFAAAVFSNLSRDHLDYHGDMANYEAAKWTLFAGHD 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTIS 294
             +      ADD   +  + +  +A    +      G  G+++    +    N   +  S
Sbjct: 234 VGQMIVN--ADDQVGQHWLSKLPDAVAVTMQDNLLPGCHGRWLKTTAISYHDNGATLRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G     ++E   +L  V GR E       
Sbjct: 292 SNWGDGEIASQLMGAFNVNNLLLALATLLALGYPLDKLVETGSRLQPVCGRMEVF-NAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    GR+  VFGCGGDRD+GKRP+MG IA   AD  +
Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCQGRLWCVFGCGGDRDKGKRPLMGGIAEQFADRVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPR+E+P+ I  +I+ G+      +    R EA+ +AI    +QDV++VAGKGHE 
Sbjct: 411 LTDDNPRTEEPQAIINDILAGLLDAGQALVIPGRAEAVTSAIMQAQEQDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             +V N       D   +  +LG +
Sbjct: 471 YQLVGNRRLDY-SDRATVARLLGRL 494


>gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
 gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
          Length = 491

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 234/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHDREKYAVLNNDDAVTPEYMRSTAATVVTYGIDTTSDIM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    V++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSE+P  I  +++ G     +    +R EAI  AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
          Length = 471

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 162/474 (34%), Positives = 234/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A+V  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWGQALGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH    +Y  AK  LF     +       ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLSQLPQAVAVSME 238

Query: 270 V----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G++G ++   +V    N   ++         F   L G F V N LVA    +++
Sbjct: 239 NNVPAGWKGPWLSATQVDYHDNGASISFDSSWGQGQFESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L    +L  V GR E          + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLAAAPQLLPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHAQAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+V+AGKGHE   +V N       D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVVIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVM 470


>gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 487

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/485 (31%), Positives = 243/485 (50%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IFP    +  I E++ DSR+++AG +F+A+ G + DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFPHAGHDLLIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    +  P++ V      LS  A R YG+     N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPITEVPLIPVKGLAAQLSDIAGRFYGEPSHHLNLIGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   +    +  + L TTP+PI +   L  L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T +AY  AK +LF     K     +  DD 
Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAEAKAKLFAWNDLKCRVVNL--DDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++      +     S+     ++++++     +  + T+     +      L G F 
Sbjct: 237 FGRQLAAEKRESRLITYSLLDSSAYLYVREAQFDDHGVRATLVTPQGEHHLRSTLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L+ L KL    GR + +G  ++   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAVGALLGLDYALDEILKVLPKLEGPAGRMQRLGGGTQPL-VVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +R    G+++ +FGCGGDRD+GKRP+M ++   LAD  +VTDDNPR+EDP  I  +
Sbjct: 356 VLTALRPHVKGQLLCLFGCGGDRDRGKRPLMAEVVERLADRVLVTDDNPRTEDPAVIFDD 415

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G   +        R +AI   I   +  DV+V+AGKGHE    + NGE+    D   
Sbjct: 416 IRAGFTAVDNVTFVAGRGQAIAQLIAGASADDVIVLAGKGHEDYQEI-NGERHAFSDLVE 474

Query: 489 IREIL 493
               L
Sbjct: 475 ADHAL 479


>gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 487

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 159/484 (32%), Positives = 234/484 (48%), Gaps = 14/484 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKR +M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRSLMAEVVERLADGVWVTDDNPRSESPAIIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G            R +AI   I   N  DV+V+AGKGHE    + +G++    D    
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 475

Query: 490 REIL 493
            + L
Sbjct: 476 AKAL 479


>gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 481

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 229/477 (48%), Gaps = 15/477 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++ ++  +++D+R ++ G +FV I G   DGH F   A   GA AIV             
Sbjct: 11  QDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCEYELENIA---- 66

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                P ++V +T   L   A  ++ K  E   +  +TGT+GK++ A  ++ +       
Sbjct: 67  ----IPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYILEHLLTGFEGH 122

Query: 144 SFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG      ++   + + TTP P+ L +    +  +GV  V++E SSH L+ HR+D  
Sbjct: 123 VGYIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVAIEVSSHALELHRVDYC 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FTNL  +H+D+H T   YF AK +LFE L P     +   D+   K V +   +
Sbjct: 183 QFKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTPDGHGIVNLDDEYGEKLVNRLKES 242

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                            + +          ++     ++   PL G F VYNAL A    
Sbjct: 243 QTAVYTYGIESDADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAMASA 302

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            +  +    ++  ++ L  V GR E +    +   + VDYAHT + +E +L+ +  I   
Sbjct: 303 YSASMPMEQIIALIKTLSPVDGRMEII-NEGQDFTVIVDYAHTPDGVEKVLEFVTGIKQN 361

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFI 440
            + VV GC GDRD+ KRP++ K+++D AD  I T D+P SEDP  I  E++ GI    + 
Sbjct: 362 GVKVVIGCPGDRDRTKRPVIAKLSVDYADDVIFTTDDPHSEDPVDILNEMVSGIKPMNYE 421

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
              +RIEAI TAI    K D++++AG+GHE +    +G  ++  D ++ +E+L   L
Sbjct: 422 VIVDRIEAIETAINKAQKNDIVLIAGRGHEQIQYWKSGNIRL-DDREVAKEVLRRRL 477


>gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
 gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 485

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 209/498 (41%), Positives = 281/498 (56%), Gaps = 23/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +       E  +  +++DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRELFGDD--------ATMDAPAGELAVTGLAADSRAVKPGDLFFALAGSKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A+    A +        R   P +   N R+ L+L A++ Y + P  I AV
Sbjct: 53  DAAIASGAVAVAGDHAPA--------RGRVPFIATPNPRRALALAAAKFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG    +  S A    +TTP PI L + L  L+ 
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGYLSASIGTVGVVAPSRAVYGSVTTPDPIELHRELDQLAG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+R+DG+++ A  FTNL RDH+DYH T   Y   K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRVDGVRVRAAGFTNLSRDHMDYHPTVAHYLETKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISV 295
            +  A+I AD   S  V++ A      V+ VG +G      I L +       Q+VT+  
Sbjct: 225 SDGIAVICADHDCSDTVIEAAGARNVPVMRVGRRGDGARMGIRLVEAAIDGFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D       LE L    GR E +G    G
Sbjct: 285 AGRERVIRLPLVGEFQIENALVSAGLVIGTGGDVDQAFAALEHLEGARGRIERIG-ERNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA D AD+ IV
Sbjct: 344 AQVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAADNADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+   PG  E G+R EAI TAI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIGTAIAGLQSGDALLIAGKGHETGQIV 463

Query: 476 TNGEKKMSVDCDIIREIL 493
            +       D +     L
Sbjct: 464 GD-RVLPFSDHEAASAAL 480


>gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
 gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
          Length = 485

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 146/506 (28%), Positives = 240/506 (47%), Gaps = 32/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQD++Y      +       +    R++  +  DSR +    +F AI G   DGH +I
Sbjct: 1   MQLQDVLYGITITSL-------VGNTSREVTALVFDSRKVVKDSVFFAIRGTMSDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
              +  GA  ++              R     + V+N+   L   A+  YG     +  +
Sbjct: 54  DDTVEAGASVVICE------VLPEIRRELATYIQVENSSVALGQMAANFYGHPSSKLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++A+ + ++ +  G     I    + I+     +  TTP PI L + L  +
Sbjct: 108 GITGTNGKTTIATLLFKLFRELGYGVGLISTVQNHINDVVVPSTHTTPDPIALNELLQSM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + QHR++G+    G F+N+  DH+D+H T   Y  AK   F ++
Sbjct: 168 VDDGCEYCFMEVSSHAVSQHRIEGLTFRGGVFSNITHDHLDFHHTFDNYIKAKK-AFFDV 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+   DD     +++                    + +           + ++ 
Sbjct: 227 LPANAFALTNLDDRNGMVMLQNTKATKKTYALKQLADFKAKIIENSFSG------LHLDI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D  F L G F  YN L   G  + +G +   VL  L  L    GRF++V +  +   
Sbjct: 281 DQADVFFKLVGSFNAYNLLAVYGTAMMLGEEQLAVLTALSNLTGAEGRFDYVSSKQQ-II 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++++ +L  I+ I  G  ++I + GCGGDRD+ KRP+M ++A D +D  I+
Sbjct: 340 GIVDYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPVMAQVACDWSDKVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+EDP+ I +E+  G+        +   +R EAI+TA  +    D++V+AGKGHE
Sbjct: 400 TSDNPRTEDPQTILSEMEAGVSPTNKRKTLSILDRREAIKTACHLAKPGDIIVLAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
               + NG K    D +I+ E L LI
Sbjct: 460 KYQDI-NGVKYHFDDKEILTEQLNLI 484


>gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
 gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
          Length = 509

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++ 
Sbjct: 25  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 84

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 85  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 144

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 145 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 204

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 205 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 262

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 263 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 322

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 323 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 381

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 382 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 441

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 442 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 500

Query: 489 IREILGL 495
            +++L L
Sbjct: 501 AQQLLEL 507


>gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
 gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
          Length = 491

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 144/496 (29%), Positives = 224/496 (45%), Gaps = 21/496 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+              P       +  +S DSR I+   +FVA+ G + DG  FI
Sbjct: 1   MRL-DLLLPFK---------VPAYLANLDVQGMSLDSREIKKNGLFVALQGAQLDGRSFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENIL 118
            +AI QGA  ++  + +S +     + +    ++V      +S  A       K+   ++
Sbjct: 51  EKAIHQGACVVLSETMHSAEHGDIKMHAQVAEILVFKLPYLISQIAYQFYFPKKNLHKVI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            +TGT+GK+++AS +    Q   + + Q+G           + L TT   I +   L+  
Sbjct: 111 GITGTNGKTTIASLLANALQLLDVKNAQMGTIGNGLFGQLKSSLNTTLDAISIFAELASY 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG  +  +E SSHGLD  R+  +   +  FTNL RDH+D+H T   Y  AK RLF E 
Sbjct: 171 QQQGAQYTLMEVSSHGLDLGRVQALPFYSAIFTNLTRDHLDHHGTMACYGLAKKRLFSEY 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             ++       DD   +  +    +          Q ++  +K++               
Sbjct: 231 SLQQRIIN--IDDPTGEMWLSE-FSDAISYGKATNQKQYFTVKEIFYQKQGICFNFQSSW 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D     P  G F V N        +A G     + +   KL+ VPGR E    + +   
Sbjct: 288 GDGQISAPFYGHFNVQNLSAVLCQLLAEGFSITQLKKVFLKLNTVPGRMEQYYFSKQDIT 347

Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAHT ++LE  L+ +      G +I +FGCGGDRD GKRP M K+A  LA   I+ 
Sbjct: 348 FVVDYAHTPDALEKALQALHQHSQKGELICLFGCGGDRDTGKRPEMAKVAEKLASQVILV 407

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DDNPR+E    I  +I+ G           +R EAIR A++  +  D+++VAGKGHE   
Sbjct: 408 DDNPRTEQASVIMQDILAGFTKKEGVQCIHSREEAIRYALKHASAGDIILVAGKGHEDYQ 467

Query: 474 IVTNGEKKMSVDCDII 489
           I+   E+    D +++
Sbjct: 468 IIG-KERIHYSDRELL 482


>gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
 gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
          Length = 490

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 162/489 (33%), Positives = 238/489 (48%), Gaps = 14/489 (2%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ + +    R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +  
Sbjct: 5   LAPWGLDVPGRALREMTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEG 64

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
              D S T     P++ + N  + LS  A + Y +      ++ VTGT+GK++    + Q
Sbjct: 65  IAADASITAMHGVPVIYLSNLNQHLSRLAGQFYQQPGAALRLIGVTGTNGKTTTTQLLAQ 124

Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             Q  G +S  +G               TT S + + + L  L  QG T  ++E SSHGL
Sbjct: 125 WSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDVQQVLHSLVEQGATVAAMEVSSHGL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       ADD    
Sbjct: 185 VQNRVAALPFAAAVFTNLSRDHLDYHGDMASYELAKWLLFSTHQSEHKIIN--ADDDVGL 242

Query: 255 EVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             + +   A    +      G+ G ++    V    N   +              L G F
Sbjct: 243 RWLSQLPQAVAVSMENKVPQGWSGPWLSASHVDYHDNGATINFDSSWGKGQLDSRLMGAF 302

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N LVA    +++    A +L    +L  V GR E          + VDYAHT ++LE
Sbjct: 303 NVSNLLVALSTLLSLDYPLADLLAAAPQLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALE 361

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A
Sbjct: 362 KALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQLADRVVVTDDNPRSEEPQAIVA 421

Query: 431 EIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I+ G+      +    R EA+ +AI    + DV++VAGKGHE   +V +       D  
Sbjct: 422 DILGGLMDAGRVLAIHGRAEAVTSAIMQAKEDDVVLVAGKGHEDYQLVGHRRLDY-SDRI 480

Query: 488 IIREILGLI 496
            +  +LG++
Sbjct: 481 TVARLLGVV 489


>gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 499

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 143/510 (28%), Positives = 230/510 (45%), Gaps = 40/510 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +     KI  +  DSR I  G +F+ + G   DG     
Sbjct: 9   KLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDR 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG     
Sbjct: 60  HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + 
Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRN 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  L
Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLL 230

Query: 234 FEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F           +  A++ ADD   +   K               G  +  K +      
Sbjct: 231 FARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNINLSPKG 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E 
Sbjct: 289 IRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEI 348

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   ++   + VDYAHT ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA  
Sbjct: 349 I-DENQDFLVIVDYAHTLDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGS 407

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +D   +T DNP SEDP+ I  +I  G        +  + +R  AI  AI M +  D+++
Sbjct: 408 YSDFVFITSDNPCSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET  I+ +       D +  R+ +
Sbjct: 468 IAGKGHETYQILKDST-IHFDDKEKARQAI 496


>gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
 gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
          Length = 494

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 169/497 (34%), Positives = 248/497 (49%), Gaps = 13/497 (2%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
               L + L+ +     ER + E++ DSR   AG +FVA+VG+K DG  +IPQAIAQG  
Sbjct: 2   TDRNLRDVLAPWVTDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVA 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A+V  +  +  D + T     P++ ++N  + LS  A R Y +      ++ VTGT+GK+
Sbjct: 62  AVVAQADEATPDGTLTEMHGVPVIYLENLNQRLSALAGRFYRQPSASLQLIGVTGTNGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    + Q  Q  G +S  +G            +  TT S + + + LS L  QG    +
Sbjct: 122 TTTQLLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAA 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL QHR++ +   A  FTNL RDH+DYH     Y  AK RLF E    +     
Sbjct: 182 MEVSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAEHQVGQKIIN- 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ADD   +  ++R  +A    ++      +  ++    +    +   V         +  
Sbjct: 241 -ADDEVGRRWLQRLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEIN 299

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G F V N L+A    +++G     +++    L  V GR E    + R   + VDYA
Sbjct: 300 SRLMGAFNVSNLLLALATLLSLGYSLEQLVKTGSALQPVCGRMEVFLASGRPT-VVVDYA 358

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L   R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSE
Sbjct: 359 HTPDALEKALAAARLHCRGVLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSE 418

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP+ I A+I+ G+           R EA+ +A+      DV++VAGKGHE   +V N   
Sbjct: 419 DPQAIVADILSGLLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERL 478

Query: 481 KMSVDCDIIREILGLIL 497
               D   +  +LG+I+
Sbjct: 479 DY-SDRITVARLLGVIV 494


>gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 504

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 163/498 (32%), Positives = 251/498 (50%), Gaps = 18/498 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K +  L + L          K  E+  DSR I+ G IF+AIVG+++DG  +I  AI++GA
Sbjct: 2   KTYRNLSDLLHQSKKLVANVKFKEIKLDSRKIEKGDIFLAIVGSQKDGRKYINHAISRGA 61

Query: 69  EAIVVSSA-YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSG 125
            AI+  S   + +D      +  PI+ V N RK +  F+ +LYG       ++ VTGT+G
Sbjct: 62  SAIIAESNSLTKEDEFIKFLNQIPIVFVKNIRKKIVFFSKKLYGSLNKKMKLIGVTGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++V+  V Q+ +  G  S  +G      I      + LTT S   +   L     + V 
Sbjct: 122 KTTVSHIVAQLAKLIGQKSAVMGTIGNGLIGEKIYPSELTTLSCFEICSTLKMFLEKSVK 181

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSHGLDQ R   +   +  FTN+ RDH+DYH   + Y  +K +LF E   K   
Sbjct: 182 IVAMEVSSHGLDQGRTCSLSFSSAIFTNITRDHLDYHNNIEHYELSKKKLFYEHDCKNRV 241

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGK 298
              + DD    + +K   N+    ++            ++  K+  ++N+  +  + +  
Sbjct: 242 --FFIDDPVGSKWIKDFPNSCAVSINHKNKLNLLNRPILYATKIEYLYNQTIIRFNSDWG 299

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + +      GEF V N ++A    + IG    L++++ +++  V GR + V  +    R+
Sbjct: 300 NGEIRTSFLGEFNVANFMLAIASLLMIGYPIHLLIKNSKRVSPVIGRMQLV--SHYNPRV 357

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAH S+SL+  L +IR    G+I  VFGCGG RD+GKR IMG+IA   +D  I+TDD
Sbjct: 358 IIDYAHNSDSLKQCLISIRKHFGGKIWCVFGCGGSRDKGKRAIMGRIAEKYSDFVIITDD 417

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR EDP+KI  EI+ G            R  AIR +I      D +++AGKGHE   IV
Sbjct: 418 NPRFEDPKKIFKEILRGCTHLESIRYFPERKYAIRYSISRAKPNDTVLIAGKGHEEKQIV 477

Query: 476 TNGEKKMSVDCDIIREIL 493
            +  K +  D  I+   L
Sbjct: 478 GD-RKILCSDYQIVVSYL 494


>gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 489

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 159/495 (32%), Positives = 239/495 (48%), Gaps = 19/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M  + +  +   +L+  L    +Q  E +I   +  DSR I  G IFVA+ G   DGH F
Sbjct: 1   MANRRIKRRIMEKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AI +GA+ I+VS     Q            +++ N RK L + AS  YG   +NI  
Sbjct: 61  IDTAIEKGAKLIIVSKEVPCQ-------KGIGYVLIKNLRKHLGILASNFYGWPQKNIKI 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           +  T       +              + G     I     +   TTP  + L + +    
Sbjct: 114 LGVTGTNGKTTTTYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAY 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G+ ++ +E SSH L+  R++ ++     FTNL  DH+DYH+T + YF AK +LF + L
Sbjct: 174 EEGLEYIIMEVSSHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLK-L 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             ++  I+  DD Y K + +  H         G QGK      +     K++V +S+ GK
Sbjct: 233 RGKAIKILNVDDEYGKRLQEEFHGISYGTKQAGVQGKI-----LGFEGGKERVELSLFGK 287

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    + G F +YN L +  L   +G+    +   +E L   PGRFE V        +
Sbjct: 288 KKECKIQILGGFNLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQ-DYMV 346

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAHT ++LE IL+ I+ I + +II +FGCGGDRD  KRPIM +IA   +D  ++T D
Sbjct: 347 VIDYAHTGDALENILQAIQEIKTKKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSD 406

Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+E+PE I  E+  G      I    R EAI   I    K D++++AGKGHET  I+ 
Sbjct: 407 NPRTENPESILEEVKGGFTKENHICVLERAEAIAEGIRRAEKGDIVLIAGKGHETYQILG 466

Query: 477 NGEKKMSVDCDIIRE 491
             +K    D +  R 
Sbjct: 467 R-KKYHFDDREFARR 480


>gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 487

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 159/486 (32%), Positives = 235/486 (48%), Gaps = 14/486 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++       ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRVINL--DDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAAIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GAEKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 433 IHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G   +        R +AI   I   N  DV+V+AGKGHE    + NG+++   D    
Sbjct: 417 RPGFVAVDKVRFVEGRGQAIAELIAGANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475

Query: 490 REILGL 495
              L +
Sbjct: 476 ASALDV 481


>gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 495

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 157/493 (31%), Positives = 237/493 (48%), Gaps = 10/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+   +    R++ E++ DSR   AG +FVAI G++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPLGIDAPVRELREMTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +  +   + + +  I    P++ V++    LS  A   Y    + +  + VTGT+GK++ 
Sbjct: 64  IAEAQGEVDNGTVQIMHGVPVVYVNDLNNKLSQLAGEFYCHPGDKLHLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q     G +S  +G            +  TT S + +   L  L  Q  T  ++E
Sbjct: 124 TQLLAQWSHGLGETSAVMGTVGNGLLGRVAPSENTTGSAVDIQLDLQQLVRQEATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A  FTNL RDH+DYH   + Y  AK  LF     K+       
Sbjct: 184 VSSHGLVQGRVAALPFEAAVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHNVKQQIINADD 243

Query: 249 DD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +    +   + +         L   +QG+++  +++        +T             L
Sbjct: 244 EIGLKWLSRLPQAVAVTMENRLPENWQGRWLAAREIKYHDKGVSITFESSWGGGTIDSSL 303

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L+A    +A+      +LE    L  V GR E   T  +   + VDYAHT 
Sbjct: 304 MGAFNVSNLLLALSTLLALDYPLEKLLETASCLEPVCGRMEVFTTPGKPV-VVVDYAHTP 362

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L   R    G++  VFGCGGDRD+GKRP+MG +A  LAD  IVTDDNPR+E+P+
Sbjct: 363 DALEKALMAARLHCQGKLWCVFGCGGDRDKGKRPLMGGVAEQLADYVIVTDDNPRNEEPQ 422

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I A+I+ G       I    R+EA+  AI      DV+++AGKGHE   +V +      
Sbjct: 423 AIIADILTGFLDPGRAIAIHGRVEAVTNAIMQAKADDVVLIAGKGHEDYQLVGHRRLDY- 481

Query: 484 VDCDIIREILGLI 496
            D   +  +LG+I
Sbjct: 482 SDRLTVARLLGVI 494


>gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
 gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
          Length = 495

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++ 
Sbjct: 11  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 71  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 130

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 131 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 191 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 248

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 249 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 309 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 368 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 427

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 428 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 486

Query: 489 IREILGL 495
            +++L L
Sbjct: 487 AQQLLEL 493


>gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 483

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 131/485 (27%), Positives = 231/485 (47%), Gaps = 16/485 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L  + ++   ++I  +  DSR +  G +F AI G   DGH +I  A+  GA A+V  
Sbjct: 6   MSELLGYTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGE 65

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
                     ++        V NT+K L++ +S+ YG+  +N+  + V GT+GK+++   
Sbjct: 66  E---------SLNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTITYL 116

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +Q + +  G+ S  IG   +     +    TTP    L + L       + +V +E SSH
Sbjct: 117 IQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEVSSH 176

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G+ ++R+D +      FTN+  +H+DYH+T + Y   KMR F +    +   +   +   
Sbjct: 177 GIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAIINCDD 236

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQ 311
                  +      +         I  K +     +   ++ V+G+       PL G++ 
Sbjct: 237 EHASSFISVTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTIPLFGKYN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN L       ++G     ++  +E + V+ GRFE       G  + +DYAH  +++  
Sbjct: 297 VYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFE-YIQAPSGVTVVIDYAHNPDAIFQ 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +  I++G II V G GG+RD+ KR IMG+ A  L+D    T DNPR+EDP  I  +
Sbjct: 356 VLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPRNEDPLSIIYD 415

Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           ++ G     +    +R +AI  A++     D +V+ GKGHE    + NG+     D  ++
Sbjct: 416 LLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHEKTQNI-NGKIVPFNDKIVV 474

Query: 490 REILG 494
            E++ 
Sbjct: 475 EEVIR 479


>gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
 gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
          Length = 499

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 255/501 (50%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+     +    ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIAQGA  ++  +     +     R+  P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDKAIAQGANLVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+     G  +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +   
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM 358

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 359 -VVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N       D +  +++L L
Sbjct: 478 LANETIHY-SDRETAQQLLEL 497


>gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
 gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
          Length = 493

 Score =  315 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 154/487 (31%), Positives = 239/487 (49%), Gaps = 8/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   + +    +    ++++  DSR +  G  FVA+ G+  DG  FI  AI +GA A+V 
Sbjct: 11  LAPWVDLAANPFGRLPVSQLELDSRKVTPGATFVAVQGHAVDGRKFIASAIDKGAAAVVA 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             +      S  +++  P++ +++    LS  A RLY      ++ VTGT+GK+++   +
Sbjct: 71  QESSEHPHGSIEVQAGIPVVYIESLDSQLSALAERLYPLQSMKLIGVTGTNGKTTITQII 130

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q        +  +G          Q    TT S I + + L+ L  Q   + ++E SSH
Sbjct: 131 AQWLGLVEKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLAALEQQSADYTAMEISSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +      FTNL RDH+DYH T + Y  AK+ LF E   K + A+I  DD  
Sbjct: 191 GLVQGRVKTLPFAVSVFTNLSRDHLDYHGTMEEYEQAKLTLFTE--HKTAHAVINVDDPV 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N+    L        I+  +V    +   ++ S    D     PL GEF  
Sbjct: 249 GARWASTLANSVQVSLKTLDADNAIYASQVDYSESGISLSFSGMYGDGKLDVPLIGEFNA 308

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N LVA    + +GID   ++E   +L  V GR E         ++ VDYAHT ++LE  
Sbjct: 309 NNVLVALATLLTLGIDKQRLVETASQLTPVIGRMELF-QTPSKAKVVVDYAHTPDALEKA 367

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L  +R    G++ V+FGCGGDRD GKRP+M +I   LAD  I+ DDNPRSEDP +I  ++
Sbjct: 368 LLALRVHCKGKLWVIFGCGGDRDVGKRPMMAEIGERLADKVIIADDNPRSEDPARIVEDM 427

Query: 433 IHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + G+        + +R  A++ A+     QD++++AGKGHE   ++ N       D +  
Sbjct: 428 LAGMSQPDLASVEHDRFNALQFALSQSQAQDIILLAGKGHEDYQVLANETIHY-SDRESA 486

Query: 490 REILGLI 496
           +++L LI
Sbjct: 487 QQLLELI 493


>gi|283783872|ref|YP_003363737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
 gi|282947326|emb|CBG86871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
          Length = 495

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 243/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   +G +FVA+ G++ DG  +IP
Sbjct: 5   NLRDLLAPWVT-----------GLPARELREMTLDSRVAASGDLFVAVKGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSENMRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVTPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  LF    
Sbjct: 174 AQGATFGAMEVSSHGLIQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFS--T 231

Query: 239 PKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +         +    ++    G+++    V    +   +  +
Sbjct: 232 HHYGQAIVNADDEVGRRWLTNLPDAVAVSMEDHINPNCHGRWLKAVAVDYHDSGATIRFT 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G   A +L+   +L  V GR E   +   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTATRLQPVCGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 351 KTTVVVDYAHTPDALEKALQAARLHCGGQLWCVFGCGGDRDKGKRPLMGAIAEQYADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIIDDILAGMLDAGRARVMEGRAEAVTNAIMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+         D      +LG+I
Sbjct: 471 YQIIGTQRLDY-SDRVTAARLLGVI 494


>gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
 gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
          Length = 492

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 147/492 (29%), Positives = 228/492 (46%), Gaps = 20/492 (4%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L + L    +    + ++ +  DSR +  G +FVAI G++ DG  FI +AI +GA A+
Sbjct: 2   RDLKSILKYIEIDAPSQLVSHLRLDSRDVNPGDVFVAIKGHELDGGQFIAKAIEKGAVAV 61

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +            ++       +V    K L+  ASR Y K   N+  + VTGT+GKS+ 
Sbjct: 62  IADRLCEFDVAFESLY------LVSELDKKLAELASRFYDKPSHNLDLIGVTGTNGKSTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            + +  + Q     S  IG               TTPS + L   LS L       V++E
Sbjct: 116 TAMIAHLAQYCNTQSAIIGTLGFGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLVAME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+   +  A  FTNL RDH+DYH    +Y +AK+ LF +        ++  
Sbjct: 176 VSSHGLVQHRVAQCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRD--FDPQLVVLNQ 233

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD  + + +++                   ++++   V          +S    D     
Sbjct: 234 DDNQAGQWLEKYDFNNLICYGRKNLAPKNAQYVYFSDVDYSDEGISAQLSTSWGDIKVKS 293

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL GEF +YN   A    + +G     ++   ++L  V GR +      +     VDYAH
Sbjct: 294 PLFGEFNLYNLTAALATLLGLGYPLEQLIAGCQQLQPVAGRMQAFSVAGKPTC-VVDYAH 352

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T  +L + L+ ++    G +  VFGCGGDRD+GKR +M + A   A+  I+T DNPRSED
Sbjct: 353 TPEALALALQALQKHVPGGVSCVFGCGGDRDKGKRVLMAQAAEKNANKVIITSDNPRSED 412

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I AE+  G+        + +R  AI  AI      +V+++AGKGHE   I+ + E+ 
Sbjct: 413 PNVIIAEVASGLAAPQSAHLEADRASAISYAINNAASNEVVLIAGKGHEDYQIIGD-ERI 471

Query: 482 MSVDCDIIREIL 493
              D   ++E L
Sbjct: 472 DFCDRQFVQEQL 483


>gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
 gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
          Length = 491

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 141/503 (28%), Positives = 231/503 (45%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR +  G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             Q V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEQNVNSAVMEVSSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++ +DD  ++E M+             +       K +         T
Sbjct: 225 GNSYHHNREKYAVLNSDDPVTEEYMRSTAATVITYGIDTHSDIM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    ++  +  L  VPGRFE V   
Sbjct: 283 LVTPSESVNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A  
Sbjct: 342 GQDYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI+T DNPRSEDP+ I  +++ G     +    +R EAI   +     +D++++AGKGHE
Sbjct: 402 AILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFYGVSEAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   E     D +I +E +
Sbjct: 462 TYQIIG-KEVHHFDDREIAKEAI 483


>gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
 gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
          Length = 486

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 145/500 (29%), Positives = 232/500 (46%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     + IN          + +++ ++ DSR  + G +FV I G   DGH +I
Sbjct: 1   MKLRELVMNLNIKAING-------NLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  G +A +V            +      + +D+TR  L+  +   +G        +
Sbjct: 54  NDAIENGTKAFLVQKHV-------VVPEGITTIEIDDTRFGLAAVSDAFFGHPSSKFNLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I + +G +   +G   + I S       TTP    L    S +
Sbjct: 107 GITGTKGKTTTTYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQSLFSDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + V    +E SS GL+ HR+       G FTN  RDHI   +   A          +L
Sbjct: 167 VEKKVDSTVMEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKE--HATLEEYFNAKAKL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+I  D  + +++ + A               +     +         T++   
Sbjct: 225 FKMCRKAVINIDSEHGRKMAELAKCKVFTYGLSDKADIW--ASDIVKKTGHTYFTLNSPW 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    L GEF +YNAL A G C  I   +   +        VPGR E V T      
Sbjct: 283 GSIDIETDLQGEFNIYNALAAIGSCCLIPGITLEHVRLGLTKVTVPGRMESVKTGG-NYS 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT +SLE +LK ++    GR++ +FGCGGDRD+GKRP MG+I+ ++AD  I+T 
Sbjct: 342 VLIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITS 401

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+E+PE+I  +I  GI      +I+  +R +AI+ A+E     D++++AGKGHET  
Sbjct: 402 DNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDIIILAGKGHETYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
                +     + +++ E+L
Sbjct: 462 QFAE-KTIHFDEREVVNELL 480


>gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 494

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 242/501 (48%), Gaps = 34/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+     E++  +         +++  ++  SR I    +F AI G   DGH FI
Sbjct: 1   MLLKELLQGV--EVLQTIGDTS-----QEVGNITQSSRDITPNTLFFAIKGAHTDGHRFI 53

Query: 61  PQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           P+ IAQ G   +V       +D    +      + V +T + +   A+  YG   E   +
Sbjct: 54  PEVIAQQGKVLVV-------EDLPEALAEGVTYVQVTDTSRAMGQIAAHFYGHPSEQLRL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++AS   Q+ ++ G     I   +       ++   TTP  + L K L  
Sbjct: 107 VGVTGTNGKTTIASLSYQLFRQLGYKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  QGVTH  +E SSHG+  HR++G+    G FTNL +DH+D+H+T   Y + K + F+ 
Sbjct: 167 MVGQGVTHCFMEVSSHGIALHRIEGLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDH 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   +D     +++                    L +           +++ 
Sbjct: 227 -LPKTAFALTNIEDKNGAYMLQNTSAHKSTYALGRAADFKGQLLESTFAG------MTLR 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +    L G F  YN L      + +G +   VL  +  L  V GRF+    +  G 
Sbjct: 280 VGNHEVWTSLIGRFNAYNLLAIYATAVLLGEEPLEVLTQISTLRSVAGRFQ-YFVSPSGV 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + VDYAHT ++L+ +++ I  I     R+I V GCGG+RD+GKRPIM  IA  L++  I
Sbjct: 339 TVIVDYAHTPDALQNVIETILDIKDPSQRLITVVGCGGNRDKGKRPIMAHIATSLSEKVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDPE+I  E+  GI        +   +R +AI+ A  +  K D++++AGKGH
Sbjct: 399 LTSDNPREEDPEEILREMEAGITPENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAGKGH 458

Query: 470 ETVHIVTNGEKKMSVDCDIIR 490
           ET   V  G +    D +  R
Sbjct: 459 ETYQEVK-GVRTHFDDLEEAR 478


>gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
 gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
          Length = 491

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 144/502 (28%), Positives = 231/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++ G     +    +R EAI  AI  +   D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
 gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
          Length = 491

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 144/507 (28%), Positives = 235/507 (46%), Gaps = 30/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR +  G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + ++ +  G  +  IG  +  I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTTSHIMDEVMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             + V    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 IEENVNSAVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DD  ++E M+             +       K +         T
Sbjct: 225 GNSYHHDREKYAVLNNDDPVAEEYMRSTAATVITYGIDTHSDIM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ ++KL  VPGRFE V   
Sbjct: 283 LVTPNESINITMKLIGKFNVYNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQDYTVIVDYAHTPDSLENVLITAKQFAKGNVYCIVGCGGDRDRTKRPIMAAVATKYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI+T DNPRSEDP+ I  +++ G     +    +R EAI  AI     +D++++AGKGHE
Sbjct: 402 AILTSDNPRSEDPKLILDDMLTGAKGNNYEVIIDRKEAIFHAISEAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
           T  I+   E     D +I +E +   L
Sbjct: 462 TYQIIG-KEVHHFDDREIAKEAISERL 487


>gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
          Length = 485

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 131/485 (27%), Positives = 231/485 (47%), Gaps = 16/485 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++L  + ++   ++I  +  DSR +  G +F AI G   DGH +I  A+  GA A+V  
Sbjct: 8   MSELLGYTLEHENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNGAIAVVGE 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
                     ++        V NT+K L++ +S+ YG+  +N+  + V GT+GK+++   
Sbjct: 68  E---------SLNPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTITYL 118

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +Q + +  G+ S  IG   +     +    TTP    L + L       + +V +E SSH
Sbjct: 119 IQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEVSSH 178

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G+ ++R+D +      FTN+  +H+DYH+T + Y   KMR F +    +   +   +   
Sbjct: 179 GIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDKKMAIINCDD 238

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQ 311
                  +      +         I  K +     +   ++ V+G+       PL G++ 
Sbjct: 239 EHASSFISVTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQMTIPLFGKYN 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN L       ++G     ++  +E + V+ GRFE       G  + +DYAH  +++  
Sbjct: 299 VYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFE-YIQAPSGVTVVIDYAHNPDAIFQ 357

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +  I++G II V G GG+RD+ KR IMG+ A  L+D    T DNPR+EDP  I  +
Sbjct: 358 VLSCLNVISTGNIITVLGAGGNRDKAKRKIMGRHATYLSDHVFFTSDNPRNEDPLSIIYD 417

Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           ++ G     +    +R +AI  A++     D +V+ GKGHE    + NG+     D  ++
Sbjct: 418 LLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKGHEKTQNI-NGKIVPFNDKIVV 476

Query: 490 REILG 494
            E++ 
Sbjct: 477 EEVIR 481


>gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
 gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
          Length = 480

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 205/486 (42%), Positives = 286/486 (58%), Gaps = 20/486 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+  +        +    Q  E  +  V+ DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRDLLRGE--------AAIDPQAAELAVAGVAVDSRAVKPGDVFFALGGHKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+          +            ++ P++V D+ R+ L+L A+ +Y + P  I AV
Sbjct: 53  EAAVK---------AGAVAVVTGHPHTASVPVVVADDPRRALALAAAVVYPRQPRTIAAV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +Q+    G ++  +G    +S        LTTP P+ L +A+  L+ 
Sbjct: 104 TGTSGKTSVAAFTRQVWDSLGHNAASLGTIGIVSRHRNVYGSLTTPDPVALHRAIDELAG 163

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASSHGLDQHRLDG+++ A +FTNL RDH+DYH T + Y   K+RLF +L P
Sbjct: 164 DGVTHLALEASSHGLDQHRLDGVRITATAFTNLSRDHMDYHPTVEHYLATKLRLFTDLAP 223

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + +PA+I AD  +S  V+  A      V++VG QG+ I L +       Q++T+   G++
Sbjct: 224 EGAPAVIAADHEHSATVIAAARTHKLNVMTVGRQGEGIRLVEAAIDGFGQRMTVEHRGQN 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL GEFQ+ NALVAAGL I+ G D+A     LE L    GR E VG    G  ++
Sbjct: 284 WRLRLPLVGEFQIENALVAAGLVISTGGDAAQAFAALEHLEGAKGRLELVGDRF-GAPVF 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L   L+ +R    GR++VVFG GGDRD GKRP+MG+IA   AD  IVTDDN
Sbjct: 343 VDYAHKPDALVKALEALRPYAKGRLVVVFGAGGDRDAGKRPLMGEIAARHADTVIVTDDN 402

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSEDP  IRA I+   PG    G+R EAIRTA+  L   DVL++AGKGHE   IV + +
Sbjct: 403 PRSEDPAAIRAAILEAAPGAQNIGDRAEAIRTAVAALAPGDVLLIAGKGHEIGQIVGD-K 461

Query: 480 KKMSVD 485
                D
Sbjct: 462 VLPFSD 467


>gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 488

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 243/487 (49%), Gaps = 13/487 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   L +      E  I+ V  DSR ++ G +F+A+ G   DG  FI QA+A GA AIV 
Sbjct: 6   LAGVLDMPSCPSAETMISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVA 65

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVAS 131
               +            P++ +   ++     ASR + +     +++ VTGT+GK++ + 
Sbjct: 66  EPPVAG----FVEALQVPLVEMPELQQESGFIASRFHKEPSVSLHMIGVTGTNGKTTTSR 121

Query: 132 FVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            V Q+ +  G S   IG      +        TTP  + L + L+    QGV   S+E S
Sbjct: 122 LVAQLIRLQGKSCGVIGTLGASLNEDVAQGGNTTPDAVSLQQQLADWRDQGVYAASMEVS 181

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH + Q R++G+      FTNL  DH+DYH + +AY  AK+ LF     K   A++  DD
Sbjct: 182 SHAMVQGRVNGVGFETAVFTNLSHDHLDYHGSMEAYGRAKLALFANEGLKH--ALVNLDD 239

Query: 251 AYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            +   V             SV      + +++      +    +       +F+ PLPG+
Sbjct: 240 EFGARVCDVVEPGVQLITYSVSNPQADVFVEQADFSAGRVTGVLRTPWGTGEFVSPLPGD 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F + N   A       G   A VL+++ +L  VPGR + + +N+ G ++ +DYAHT ++L
Sbjct: 300 FNLANLAAAVSAVTLAGEPLAEVLKNVSRLRPVPGRMQSL-SNTLGLQVIIDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L  +R    G+++VVFGCGGDRD+ KR +MG++A  +AD  +VT DNPR EDP  I 
Sbjct: 359 EQVLTALRLHVDGQLVVVFGCGGDRDREKRQVMGRVACAIADKVLVTSDNPRGEDPAAIL 418

Query: 430 AEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           A+I  G  G ++ + +R  AI+ A+      D +V+AGKGHE   +V +GE     D + 
Sbjct: 419 ADIEVGCSGQYLLEVDRSTAIKRAVNEAGAGDCVVIAGKGHEDYQVV-DGEYLHFSDEEQ 477

Query: 489 IREILGL 495
               L +
Sbjct: 478 ALAALAV 484


>gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
 gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
          Length = 512

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 248/487 (50%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++ 
Sbjct: 28  IAPWLELTDPKLATLVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLA 87

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H    + VTGT+GK+++   +
Sbjct: 88  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLI 147

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503

Query: 489 IREILGL 495
            +++L L
Sbjct: 504 AQQLLEL 510


>gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
 gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
          Length = 491

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 146/502 (29%), Positives = 231/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYHQT + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNGEKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 495

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 157/502 (31%), Positives = 244/502 (48%), Gaps = 20/502 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+          +     Q ++ ++  + ++S     G +F+ I G + DG  F 
Sbjct: 1   MNLRELLA--------VIDGVEYQGKDVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFW 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P A+A GA A ++S   + +       S+  ++   +  K  +   +  YG   E   I+
Sbjct: 53  PSALAAGAVAAIISPQAASKTPPT---SDALVITATSLNKVCAQVCAAFYGYPAEKLQIV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++ L +  +G   T  + F+Q    TTP  I L   L+  
Sbjct: 110 GVTGTNGKTTTTHLIEYFLNQANLPAALLGTLYTRWTGFSQVANRTTPFAIDLQHNLAQA 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH L Q R+ G       FTNL +DH+DYHQ  + YF AK  LF   
Sbjct: 170 VDAGCQLGIMEVSSHSLVQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPD 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  A+I  DD Y + +            S+        +  +    +     +    
Sbjct: 230 -YLQGRAVINIDDHYGQRLTIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPE 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGG 356
            +  F  PL G++ + N L A    + +G+D   V++++     VPGR E +  N  +  
Sbjct: 289 GNSPFSSPLVGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQINPHQDI 348

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MG+IA DLAD+ +VT
Sbjct: 349 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDKTKRPKMGRIAADLADVVVVT 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+P+ I  +I+ G+P  +     G+R  AI TAI      D +++AGKGHE   
Sbjct: 409 SDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKGHEDYQ 468

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
           I+   EK    D +  R+ L L
Sbjct: 469 ILGT-EKIHFDDREQARDALHL 489


>gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
 gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
          Length = 491

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 147/503 (29%), Positives = 240/503 (47%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHNF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  ++  A++ +DD  ++E M+                  I  K +         T
Sbjct: 225 GNSYNHNRKKYAVLNSDDPVTEEYMRSTAATVVTYGI--DVSSDIMAKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  D    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQ 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  ++I       +    +R EAIR AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   E     D ++ +E +
Sbjct: 462 TYQIIG-KEVHHFDDREVAKEAI 483


>gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Vibrio cholerae LMA3894-4]
          Length = 495

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++ 
Sbjct: 11  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLA 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 71  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 130

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 131 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 191 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 248

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 249 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 309 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 368 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 427

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 428 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 486

Query: 489 IREILGL 495
            +++L L
Sbjct: 487 AQQLLEL 493


>gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 494

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 151/502 (30%), Positives = 229/502 (45%), Gaps = 22/502 (4%)

Query: 1   MKLQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L +        + +Q+         +  I     DSR +  G I++ I G   DGH F
Sbjct: 1   MRLPEK-NNTLQSISDQIAGATSRGNLQVGITGAKMDSRKVIPGDIYICIPGFHADGHDF 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
                        V +  +       +  + P + V N R+     A+ ++G   + +  
Sbjct: 60  ---------AEAAVKAGAAALAVERYLPLDVPQIKVRNIRQTAGKIAAAVFGYPSQKLEL 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V   ++ I Q +G  +  IG     I +     + TTP    +   L+ 
Sbjct: 111 IGVTGTNGKTTVTHLIESIAQENGKKTGLIGTLGSRIGNRGIPGQHTTPESAEIQDLLNQ 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV    +E SSH LD  R+ G +     FTNL +DH+DYHQ+ + Y  AK  LF +
Sbjct: 171 MVEEGVNTAVMEVSSHALDLGRIVGCRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQ 230

Query: 237 LL--PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +        AI+ ADD  S+ +M +                    +K+          + 
Sbjct: 231 MSGEKPGQKAILNADDQASEYLMTKTSCRVVTYGIEKKADY--QAEKIVLSDKGIYFDLV 288

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +       F  PG+F VYN L A    +  G +S  V + L  L  VPGRF+ +     
Sbjct: 289 YKKIREKVFFATPGKFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSIRKGQ- 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAHT + LE +L   R IT  R+I VFGCGGDRD+GKRP+M + A   +D  I
Sbjct: 348 PFLVIIDYAHTPDGLENVLSTAREITGRRLITVFGCGGDRDRGKRPLMAEAASGWSDYVI 407

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR+EDPEKI  +I+ G+    +    +R  AI  A  M  + D +++AGKGHE  
Sbjct: 408 VTSDNPRTEDPEKIIGDILPGMGKVDYEVIVDRRRAIHRACTMAGEGDTVLIAGKGHEDY 467

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+    K    D +     L 
Sbjct: 468 QIIGTS-KIHFDDKEEASAALR 488


>gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
 gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
          Length = 495

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 250/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++ 
Sbjct: 11  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 71  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 130

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 131 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 191 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 248

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 249 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 309 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 368 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 427

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 428 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 486

Query: 489 IREILGL 495
            +++L L
Sbjct: 487 AQQLLEL 493


>gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
 gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
          Length = 514

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 162/519 (31%), Positives = 239/519 (46%), Gaps = 34/519 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+          L  +        ++E+  DSR +  G +F+A+VG++ DG  +I 
Sbjct: 5   NLRDLLAPYL------LDPYKQDVPSLPLSEMVLDSRLVAKGDVFIALVGHQTDGRHYIS 58

Query: 62  QAIAQGAEAIVVS-------------SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           QAIAQGA A++                     +   T     PI+ +++  + LS  A +
Sbjct: 59  QAIAQGATAVIAEAQGQSAPSIPTQQRGGFKGEGYITTIQGVPIVYLNHLNQHLSKLAGQ 118

Query: 109 LYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTT 164
            Y +      ++ VTGT+GK+++   + Q  Q  G  S  +G                TT
Sbjct: 119 FYHQPGARLKLVGVTGTNGKTTLTQLLAQWSQALGNISAVMGTLGNGLLQQSLIATENTT 178

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH    
Sbjct: 179 GSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGDMA 238

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK---- 280
            Y  AK +LF     KE      ADD   +  + +  +A    +       +        
Sbjct: 239 RYEAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLETK 296

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +        +       +   +  L G F V N L+A    +A+      ++  + +L 
Sbjct: 297 NINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATVSQLQ 356

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+GKR 
Sbjct: 357 AVCGRMEVFNALDRPT-VIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDKGKRA 415

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLN 457
           +MG IA   AD  +VTDDNPR+EDP  I A+I+ G   I   +   NR EAI + +    
Sbjct: 416 LMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGLVEIRHAVVIHNRAEAINSVVMQAK 475

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +QDV+VVAGKGHE   +V N       D  I+ ++LG I
Sbjct: 476 EQDVVVVAGKGHEDYQLVGNRRLT-FSDRHIVAQLLGAI 513


>gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
 gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
          Length = 496

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 157/504 (31%), Positives = 245/504 (48%), Gaps = 16/504 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       I Q+   P    E+++  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLRELL--TLIPTITQIPEHP--ALEKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
             AI       + +              +  ++ V++     +  A+  YG       ++
Sbjct: 57  SSAIE---AGAIAAIISPAAALQYPPTGDAYVIQVEDVVSVCAEIAAAFYGYPARQMKMI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    +    +  +G      + + Q    TTP    L + L+  
Sbjct: 114 GVTGTNGKTTTTHLIEFFLSQCQYPTALLGTLYTRWAGYEQTAVHTTPFAAQLQEQLAQA 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH L Q R+         FTNL +DH+D+HQ  + YF AK +LF   
Sbjct: 174 LKAGSQYGVMEVSSHALAQRRVQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAE 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII  DD Y K ++           SV       + + +C   N     +    
Sbjct: 234 -YLKGKAIINLDDPYGKRLIDSLSREKVWSYSVSDSSANFYTRDLCYEANGVSGILHTPI 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGG 356
            +  F  PL G++ + N L A G  +++G+D   ++++L     VPGR E V  ++ +  
Sbjct: 293 GEVAFYSPLVGQYNIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +LAD+A+VT
Sbjct: 353 SVIVDYAHTPDSLENLLKAARPFIEGRMICVFGCGGDRDRTKRPKMGKIAAELADVAVVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I  +I+ GIP  +      +R  AI  AI      D +++AGKGHE   
Sbjct: 413 SDNPRTEDPQQILKDILAGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREILGLIL 497
           I+   EK    D +  RE L + L
Sbjct: 473 ILGT-EKIHFDDREQAREALTVRL 495


>gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 499

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 148/505 (29%), Positives = 237/505 (46%), Gaps = 24/505 (4%)

Query: 1   MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L+ L    +      L++Q     +   +  +  +  DSR    G IFVA+ G   DG
Sbjct: 1   MNLKPLNNYIVALTEEHLLSQAYTGEVSTEQCPVTSIEQDSRRASEGCIFVALRGVHVDG 60

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             +IP+A+A G   IV            ++      L V +T K +++ AS  Y +    
Sbjct: 61  ADYIPKALAAGCRIIVTEHP-----RPESLSDEVAWLTVTDTAKAIAVLASVYYDRPERQ 115

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
             I+ VTGT+GK++ A+   Q+    G+ +         I         TTP  + L + 
Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVCIRIGDKEYPATHTTPDALELHRV 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +   G  ++ +E SSH L Q R+ G+      FTNL RDH+DYH T QAY  AK  L
Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+  L  ++ A++ ADD     +++             +      L            T+
Sbjct: 236 FDH-LSPDAYALVNADDRNGSVMVQNCAAHLHTYAMRSHADYMAQL----LGQYVDGSTL 290

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++ ++ +             A+      +   +D +L+L  +  L  V GRF+ +  + 
Sbjct: 291 LLDNEEVEIKLVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLA-SP 349

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  + VDYAHT ++LE +LK +  + + ++ VV G GGDRD GKRP MG+IA ++ D  
Sbjct: 350 RGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHL 409

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +T DNPRSEDP+ I  +++ GIP           +R +AI  A     + D++V+AGKG
Sbjct: 410 YLTSDNPRSEDPQTIIDQMLEGIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET   +  G +    D +++REI 
Sbjct: 470 HETYQEIE-GVRHHFDDKEVVREIF 493


>gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
 gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
          Length = 512

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 248/487 (50%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++ 
Sbjct: 28  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLA 87

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 88  EADAQHINGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 148 AQWLELLGHEAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHTCQN--AIINVDDAV 265

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G +   +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 326 ACNLLLALATLLSLGFEKNALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 445 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503

Query: 489 IREILGL 495
            +++L L
Sbjct: 504 AQQLLEL 510


>gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103]
 gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103]
          Length = 499

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 241/503 (47%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + +++ DSR   AG +FVAI G++ DG  FIP
Sbjct: 9   NLRDLLGPWVPD-----------APARPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIP 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119
           QAIAQG  A++  +     D         P++ +    + LS  A R Y +    + ++ 
Sbjct: 58  QAIAQGVAAVIAEAEGEASDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQKLIG 117

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q     G +S  +G               TT S + +   L  L 
Sbjct: 118 VTGTNGKTTTTQLLAQWASLLGETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELV 177

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   Q Y +AK  LF E  
Sbjct: 178 RKGASLTAMEISSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSE-- 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   AII ADD   +  +    +A    +      G  G+++    V    N   +   
Sbjct: 236 HQVGVAIINADDEVGRRWLANLPDAVAVTMENNLQPGCHGRWLRATDVNYHDNGAHIRFD 295

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L    +L  V GR E   + + 
Sbjct: 296 SSWGEGEMNSRLMGAFNVSNLLLALATLLALGYALDDLLRVAARLQPVNGRMEVF-SATG 354

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  +FGCGGDRD+GKRP+MG IA   ADI +
Sbjct: 355 KPTVVVDYAHTPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADIVV 414

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPRSEDP+ I  +I+ G+           R +A+ + I      D+++VAGKGHE 
Sbjct: 415 VTDDNPRSEDPQAIVQDILSGLLDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKGHED 474

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ N       D   +  +LG
Sbjct: 475 YQIIGNQRLDY-SDRATVATLLG 496


>gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
 gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
          Length = 488

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 158/502 (31%), Positives = 260/502 (51%), Gaps = 31/502 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+YK   EL+       +   +  + +V  DSR I+ G +F+A+ G   DGH FI 
Sbjct: 3   NLKDLLYKVSLELV-------IGPTDIDVEQVQFDSRAIRKGDVFIALKGTAVDGHQFIE 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           +A+A GA A++      L+D       +   + VDN  K L+L  +  Y    +   ++ 
Sbjct: 56  KAVASGAVAVL------LEDLPDYQAEHVTYIQVDNAHKALALIGANYYDNPSKDLKLVG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++  S + Q+ ++ G  +  I      I       + TTP P+ +   L+ + 
Sbjct: 110 VTGTNGKTTTTSLLYQLFKKLGFKTGLISTVEILIDGKVIPTKHTTPDPVTINSHLAAMR 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GV +  +E SSHG+DQ R+ G+  + G FTNL  DH+DYH T   Y + K R F+  L
Sbjct: 170 DAGVDYCFMEVSSHGIDQQRITGLHFVGGMFTNLTHDHLDYHNTFAEYRDVKKRFFDM-L 228

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P ++ A+   DD   + +++             Y      + +           + ++  
Sbjct: 229 PSDAFALTNRDDKNGEFMLQNTKARKLGYALKTYTDYRAQIIENQFGG------LQLKVN 282

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + +    + GEF  YN L   G  I +G++S  VLE + +L  V GRF++  T ++    
Sbjct: 283 NQELWTKMIGEFNAYNVLAIYGCAIELGLESTEVLEAISQLDGVSGRFQYFTTAAQHITA 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VDYAHT ++L+ +L+ I  I +   ++I V GCGGDRD+ KRP+M  IA  L+D+ I T
Sbjct: 343 IVDYAHTPDALKNVLETINAIRTRNEKLITVVGCGGDRDKSKRPVMANIAASLSDLIIFT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR+E+P+ I  ++  G+        +   +R  AI+TA++M  + D++++AGKGHET
Sbjct: 403 SDNPRTENPDAILKDMEAGVEAIDFKKTLTVTDRKNAIKTAVQMAQQNDIILIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              + NG +    D  I+ ++L
Sbjct: 463 YQEI-NGVRSDFNDRLIVADLL 483


>gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 491

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 231/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
 gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
          Length = 483

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 162/499 (32%), Positives = 235/499 (47%), Gaps = 24/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     +          +  +  I  + +DSR IQ G +FVA  G+  DG LFI
Sbjct: 1   MKLTQLLKSWLNQ----------EVVDCTITGMQNDSRLIQPGDLFVAYPGSAADGRLFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
            +A++ GA A+V   A    D    + ++ P + V +    L+  A   Y        I 
Sbjct: 51  AKAVSAGAVAVVYEPANFPIDG--VLPTSIPCIAVPDLATKLAYIAKAFYDDPENSLTIT 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++A  + Q     G  +  IG     + +  Q    TTP  + L K L   
Sbjct: 109 GITGTNGKTTIAYQLAQAHHLLGQGAAYIGTIGQGNVNELQPLDNTTPDSLRLQKLLHQY 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG+  V +E SSH L QHR+D +      FTNL  DH+DYH   + Y  AK  LF   
Sbjct: 169 KEQGLKQVCMEVSSHALAQHRVDALTFKQAIFTNLTLDHLDYHHNMENYAAAKAILFSGE 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   AII  DD Y + +         ++     +   +         N  ++ +    
Sbjct: 229 SLQW--AIINQDDEYQQVMAAALKPHVKKLTYGLREDCDVKAVNWRMDINGTEIDVHSPW 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                     G F +YN+L      +A G     V+  + +L   PGR E V +      
Sbjct: 287 GQHHLRIKALGAFNIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRLEIVASAPY--- 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L  +  I  GR+ VVFGCGGDRD+ KRP+MGKIA   AD  I+T 
Sbjct: 344 VLVDYAHTPDALENALVTLGQIKKGRLWVVFGCGGDRDKSKRPMMGKIASLNADKIIITS 403

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP+ I  EIIHGI          NR EAI  A+E  N  D++++AGKGHE    
Sbjct: 404 DNPRTEDPQTIIEEIIHGITPAAHVMQFVNREEAIAYALENANIDDIILIAGKGHEAYQQ 463

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +    K    D ++++ ++
Sbjct: 464 IGR-VKHAFSDQEVVQRLM 481


>gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
 gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
          Length = 499

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 255/501 (50%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+     +    ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIAQGA  ++  +     +     R+  P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDKAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+     G  +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +   
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM 358

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 359 -VVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N       D +  +++L L
Sbjct: 478 LANETIHY-SDRETAQQLLEL 497


>gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 484

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 159/475 (33%), Positives = 248/475 (52%), Gaps = 15/475 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E ++     DSR +  G IFVA+ G +EDG  FIP A   GA  IV       ++ +A  
Sbjct: 16  EIEVRA---DSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGAGVIVC--RADSEEAAAAA 70

Query: 87  RSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +   ++   + R+ L   A         P  I+ VTGT+GK++    ++++  ++G   
Sbjct: 71  TAGCRVVHHADPREALWRLAQARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAGHKL 130

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G  S       +   LTTP  + +   L+ ++  GV    +E SSH +DQ R+ G+ 
Sbjct: 131 GVMGTVSYRWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEVSSHAIDQQRVCGVP 190

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNL +DH+DYH+  ++YF AK RLF EL   +    + ADDA+ + +++    A
Sbjct: 191 FSGAAFTNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLELCPTA 250

Query: 264 GCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               L  G   +     ++  +      + +S+E   ++   PL G F   N L    + 
Sbjct: 251 LSFGLQKGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAVA 310

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +GID       LE    V GR E V  N +G  ++VDYAHT ++LE +LK +R     
Sbjct: 311 LEMGIDPEAFK-ALESFTGVSGRLERV-ENPQGLNVFVDYAHTPDALENVLKALRDAGFE 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
           R+I VFGCGG+RD+ KRPIMG+     +D+A++T DNPR EDPE I  +++ G+      
Sbjct: 369 RVITVFGCGGNRDRSKRPIMGEAVARWSDVAVLTSDNPRFEDPEAILKDVLPGLADAKEV 428

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + + +R EA   A+ ML K+D L++AGKGHE   I+  G K    D +++REIL 
Sbjct: 429 VVEVDRREATTRALGMLGKKDALLIAGKGHEDYQIIQ-GVKHHYSDQEVVREILR 482


>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 145/500 (29%), Positives = 226/500 (45%), Gaps = 24/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ ++            +     +E +I+ + ++S+ I  G +F+A  G K DG  +I
Sbjct: 1   MKLKKVLKDIPV-------VQVKGSKEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P+AI  GA AIV                    ++  N  +    F++  Y    +   I+
Sbjct: 54  PEAINHGATAIVTD-------IYDPSFKEITQIICKNVAEVEGRFSANFYQMPSQELFIV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  V+ + ++  L    IG    I   +      TTP        L  +
Sbjct: 107 GITGTNGKTTTSFLVKYLLEQLNLPCGLIGTIEYILGRYRYKASHTTPDVHSNHHMLREM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG     +E +SH LDQ R++ I      +TNL +DH+DYHQ  + Y  AK +LF +L
Sbjct: 167 VHQGCQAAVMEVTSHALDQKRVEHIDYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQL 226

Query: 238 LPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               S               +                    +             + +  
Sbjct: 227 DQVPSKKSKQIIANLDCPWFETILKGIKTPIFTFGIDSPADLRACPTSFGPTGTHIDLHY 286

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G+ +   FPL G F +YN L A  + +   I    ++   ++    PGR E +  N   
Sbjct: 287 QGRSYSTFFPLIGRFNIYNCLAAIAVGLTRKITLEKLISLAQQFPPPPGRLEPI-QNDLD 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++VD+AHT ++L   L+ +  +  G+II VFGCGGDRD+ KRP M + +   +D+ IV
Sbjct: 346 LNLFVDFAHTEDALYKALECLSELKKGKIITVFGCGGDRDKTKRPKMAQASASFSDLTIV 405

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPRSEDP KI  EI  G      +I + +R  AI  AIE  N  D+++VAGKGHET 
Sbjct: 406 TSDNPRSEDPLKIIQEIAEGFSLQDNYIVQPDRFSAIAFAIEKANPGDIILVAGKGHETT 465

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            I  +   +   D  I +EI
Sbjct: 466 QIFAHHTIE-FDDRKIAQEI 484


>gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 148/505 (29%), Positives = 238/505 (47%), Gaps = 24/505 (4%)

Query: 1   MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L+ L    +      L++Q     +   + ++  +  DSR +  G IFVA+ G   DG
Sbjct: 1   MNLKPLNNYIVALTEEHLLSQAYTGDVSIAQCQVTSIEQDSRRVSEGCIFVALRGVHVDG 60

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             +IP+A+A G   IV            +       L V +T K +++ AS  Y +    
Sbjct: 61  ADYIPKALAAGCRIIVTE-----LPRPESASDEVVWLTVTDTAKAIAVLASVYYDRPERQ 115

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
             I+ VTGT+GK++ A+   Q+    G+ +         I         TTP  + L + 
Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWSWLGMRAALFSTVCIRIGDKEYPATHTTPDALELHRV 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +   G  ++ +E SSH L Q R+ G+      FTNL RDH+DYH T QAY  AK  L
Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+  L  ++ A++ ADD     +++             +      L            T+
Sbjct: 236 FDH-LTPDAYALVNADDRNGSVMVQNCAAHLHTYAMRSHADYMAQL----LGQYVDGSTL 290

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++ ++ +             A+      +   +D +L+L  +  L  V GRF+ +  + 
Sbjct: 291 LLDNEEVEIKLVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLA-SP 349

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  + VDYAHT ++LE +LK +  + + ++ VV G GGDRD GKRP MG+IA ++ D  
Sbjct: 350 RGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCDHL 409

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +T DNPRSEDP+ I  +++ GIP           +R +AI  A     + D++V+AGKG
Sbjct: 410 YLTSDNPRSEDPQTIIDQMLEGIPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET   +  G +    D +++REI 
Sbjct: 470 HETYQEIE-GVRHHFDDKEVVREIF 493


>gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
 gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
          Length = 491

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 141/503 (28%), Positives = 231/503 (45%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR +  G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             Q V    +E SSH L   R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEQNVNSAVMEVSSHALSLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++ +DD  ++E M+             +       K +         T
Sbjct: 225 GNSYHHNREKYAVLNSDDPVTEEYMRSTAATVITYGIDTHSDIM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    ++  +  L  VPGRFE V   
Sbjct: 283 LVTPSESVNITMKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A  
Sbjct: 342 GQDYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI+T DNPRSEDP+ I  +++ G     +    +R EAI   +     +D++++AGKGHE
Sbjct: 402 AILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFHGVSEAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   E     D +I +E +
Sbjct: 462 TYQIIG-KEVHHFDDREIAKEAI 483


>gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 495

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 233/503 (46%), Gaps = 21/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+     ++            E  + E++ DSR   AG +FVA+ G++ DG  +IP
Sbjct: 5   NLRDLLALWGIDI-----------PELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  A++  +       +       P++ +D+    LS  A   Y        ++ 
Sbjct: 54  QAIAQGVAAVIAEAKGKAGHGTIQKVHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G            +  TT S + +   L  L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQGFGETSAVMGTVGNGLLGMVVPSENTTGSAVDIQLDLQQLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +Q  T  ++E SSHGL Q R+  +   A  FTNL RDH+DYH     Y NAK  LF    
Sbjct: 174 NQKATFAAMEVSSHGLIQGRVAALPFQAVVFTNLSRDHLDYHGDMDHYENAKWMLFSNHD 233

Query: 239 PKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            K+            +   + +         L   +QG+++   +V        +  +  
Sbjct: 234 VKQKIINADDAVGQKWLSRLPEAVAVTMENCLPENWQGRWLLANEVHYHDKGASIAFTSC 293

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PL G F V N L+A    +++      +L     L  V GR E      R  
Sbjct: 294 WGSGTLNSPLMGAFNVSNLLLALATLLSLEYPLEKLLATASCLEPVCGRMEVFAAEGRP- 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE  L   R    G++  VFGCGGDRD+GKRP+MG +A   AD  IVT
Sbjct: 353 TVVVDYAHTPDALEKALSAARLHCKGQLWCVFGCGGDRDKGKRPLMGGVAELGADRVIVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DDNPRSE+P  I A+I+ G       +    R+EA+ +A+    + DV++VAGKGHE   
Sbjct: 413 DDNPRSEEPHSIVADILKGFVDPGRAMTIHGRVEAVTSAVMQATEDDVILVAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           +V N       D   +  +LG+I
Sbjct: 473 LVGNRRLDY-SDRLTVARLLGVI 494


>gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
 gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia rickettsii]
 gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 479

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 160/487 (32%), Positives = 255/487 (52%), Gaps = 23/487 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
                  +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  
Sbjct: 2   SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKK 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++            ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q  
Sbjct: 62  NIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113

Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              G  +  IG         ++       LTT   +   K    L+  G+ ++  EASSH
Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D   
Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V    HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ 
Sbjct: 234 IEFVKDYLHNHNVKFITVGTKGDLE-ITRLNCSLKGQNINFTFNNREYNFNTPIIGSFQA 292

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A      IG     V++ L ++  V GR E +        I+VDYAHT ++LE  
Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348

Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRA
Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408

Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           EII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D ++
Sbjct: 409 EIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467

Query: 489 IREILGL 495
           +R+ + +
Sbjct: 468 VRKCIKV 474


>gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia sp. Ejp617]
          Length = 495

 Score =  314 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 162/505 (32%), Positives = 242/505 (47%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +  +FVAI G+  DG  FIP
Sbjct: 5   NLRDLLAPWVP-----------GAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A++  +    +D         P++ +    + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +   +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A +FTNL RDH+DYH     Y  AK  LF E  
Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAEHQ 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AII ADD   +  +++  +A    +      G  G+++   KV       +V  S
Sbjct: 234 VGQ--AIINADDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + D    L G F V N LVA    +++      +     +L  V GR E   +   
Sbjct: 292 SSWGEGDIDSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSEDP  I  +I+ G+           R +A+   +    + D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ +       D D +  +LG++
Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLGVL 494


>gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
 gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
          Length = 491

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 147/503 (29%), Positives = 240/503 (47%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHNF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  ++  A++ +DD  ++E M+                  I  K +         T
Sbjct: 225 GNSYNHNRKKYAVLNSDDPVTEEYMRSTAATVVTYGI--DVSSDIMAKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  D    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVDVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +   +G +  + GCGGDRD+ KRP+M  +A++ A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFANGDVYCIVGCGGDRDRTKRPVMASVAVEYATQ 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  ++I       +    +R EAIR AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPVAILDDMIKDAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   E     D ++ +E +
Sbjct: 462 TYQIIG-KEVHHFDDREVAKEAI 483


>gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
 gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
          Length = 487

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 157/505 (31%), Positives = 242/505 (47%), Gaps = 31/505 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+ K  P       +         IN V+ DSR ++ G +FVA+ G + DGH FI
Sbjct: 2   MKLSDLLQKISP-------LETRGSLTIDINGVNMDSRLVEKGNLFVAVKGTQTDGHAFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI +GA AI+VS         A   ++   + V +T   +   A+  YG   +   ++
Sbjct: 55  AGAIEKGASAILVSEPI-----PAETPTDVTFVRVADTEDAIGKVATTFYGDPTQRLKLV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  +    G          + I + A     TTP P+ L K L  +
Sbjct: 110 GVTGTNGKTTIATVLYHLFTELGFKCGLCSTVCNYIGTHAVPTEHTTPDPVTLNKLLGEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +  +E SSH + Q R+ G+      FTNL RDH+DYH+T + Y +AK   F + 
Sbjct: 170 ADEGCEYAFMECSSHAIHQKRIGGLDFAGALFTNLTRDHLDYHKTFENYRDAKK-AFFDG 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K++ AI  ADD     +++          +         + +        ++      
Sbjct: 229 LSKQAFAITNADDKNGPIMVQNTKARIKTYSTRAAADYKGKILEESLEGMLLEINGREVS 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F   F +       N L   G  I +G+     L  L  LH V GRFE    + +G  
Sbjct: 289 VRFVGRFNVS------NLLAVYGAAIELGVSPDETLRVLSSLHPVNGRFE-AIRSPKGVS 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +DYAHT ++L  +L +I  I  G+  +I V G GG+RD+GKRP+M + A + +D  I+
Sbjct: 342 AIIDYAHTPDALANVLSSIDEIVHGKAQVITVCGAGGNRDKGKRPLMAQEAANRSDRVII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G+        I   +R EAIR A  M    DV+++AGKGHE
Sbjct: 402 TSDNPRFEEPQAIVDDMLAGLDETQRAKTIAIVDRREAIRAAAAMAQAGDVILIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
               +  G K    D + +R+  GL
Sbjct: 462 PYQEIK-GVKHHFDDHEEVRKAFGL 485


>gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7424]
 gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424]
          Length = 496

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 158/503 (31%), Positives = 245/503 (48%), Gaps = 17/503 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL++L+ K     +  L I      ++++  +S++S   Q G +F+ + G + DG  F  
Sbjct: 3   KLRELLTK-----VPSLVIPEHPALDKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFWT 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AI       + +              +  ++   +     +  ++  YG   +   ++ 
Sbjct: 58  SAIE---AGAIAAIITPQAGSKYPPTEDVCVIQAADMVSICAEISAAFYGYPAQQMKMIG 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++    +S  ++  +G   T    + Q    TTP    L + L+   
Sbjct: 115 VTGTNGKTTTTHLIEYFLTQSQFNTALLGTLYTRWQGYQQTALHTTPFATELQEQLAQAV 174

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  +  +E SSH L Q R+ G       FTNL +DH+D+H+  + YFNAK  LF    
Sbjct: 175 KAGSEYAVMEVSSHALAQRRVAGCPFEVAVFTNLTQDHLDFHKDMEDYFNAKALLFSPD- 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AII  DD Y + ++           SV       + K +    N     +     
Sbjct: 234 YLTGRAIINLDDPYGQRLINSLSGEKVWSYSVNNPDANFYTKDLTYEANGVSGILHTPIG 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGR 357
           + +F  PL G++ + N L A G  + +G+D   ++E L     VPGR E V  +  +   
Sbjct: 294 EVNFYSPLVGQYNIANLLAAVGAVVHLGVDLKSIVESLPLFSAVPGRMERVKISDKQDIS 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G++I VFGCGGDRD+ KRP MGKIA +LAD+A+VT 
Sbjct: 354 VIVDYAHTPDSLENLLKAARPFIEGKMICVFGCGGDRDRTKRPKMGKIAAELADLAVVTS 413

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E+PE+I  +I+ GIP     +   +R EAIRTAI      D +++AGKGHE   I
Sbjct: 414 DNPRTENPEQILEDILAGIPQSVKPVVISDRAEAIRTAIMDAKPGDGVLIAGKGHEDYQI 473

Query: 475 VTNGEKKMSVDCDIIREILGLIL 497
           +   EK    D +  RE L + L
Sbjct: 474 LGT-EKIHFDDREQAREALTIRL 495


>gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
 gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
          Length = 512

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 249/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++ 
Sbjct: 28  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLA 87

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 88  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503

Query: 489 IREILGL 495
            +++L L
Sbjct: 504 AQQLLEL 510


>gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
 gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
          Length = 495

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 162/503 (32%), Positives = 242/503 (48%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P               R + +++ DSR   +G +FVA+ G++ DG  FIP
Sbjct: 5   NLRDLLGPWVP-----------GAPARPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A+V  +     D         P++ +    + LS  A R Y +  E    + 
Sbjct: 54  QAIAQGVAAVVAEAEGEATDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQTLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q     G +S  +G               TT S + +   L  L+
Sbjct: 114 VTGTNGKTTTTQLLAQWATLLGETSAVMGTVGNGLVGHLVAAENTTGSAVDVQHMLHELA 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH    +Y +AK  LF E  
Sbjct: 174 EKGATLTAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMPSYESAKWLLFSEHQ 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AI+ ADD   +  + R  +A    +      G  G+++    V    N   +  S
Sbjct: 234 VGQ--AILNADDEVGRRWLARLPDAVAVTMEDNLQSGCHGRWLKADAVEYHDNGAHIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +   PL G F V N L+A    +++    A ++    +L  V GR E      +
Sbjct: 292 SSWGNGEIDSPLMGAFNVSNLLLALATLLSLNYPLATLISVAPRLQPVNGRMEVFSAAGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCKGKLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSEDP+ I  +I+ G+           R +A+  AI      D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEDPQAIVKDILTGLLDPGRARVVSGRAQAVTNAIMQAQPDDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ N       D   +  +LG
Sbjct: 471 YQIIGNRRLDY-SDRATVAALLG 492


>gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 487

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 158/486 (32%), Positives = 234/486 (48%), Gaps = 14/486 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   +F    R+  I E++ DSR+++ G +F+A+ G   DG   I  A+ +GA A+    
Sbjct: 4   NLSKLFAHTDRDALIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFV 133
           AY ++       ++ P++ V      LS  A R YG    +++   VTGT+GK+SV   V
Sbjct: 60  AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLILVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF  L  K     +  DD +
Sbjct: 180 GLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWLDLKCRVINL--DDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G            R +AI   I   N  DV+V+AGKGHE    + NG+++   D    
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475

Query: 490 REILGL 495
              L +
Sbjct: 476 ASALAV 481


>gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
 gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
          Length = 505

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 149/496 (30%), Positives = 244/496 (49%), Gaps = 27/496 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
              ++ +I  +  DSR I+  ++FVA+ G+  DGH FI  A+  GA+ I+      ++ +
Sbjct: 14  KDGKKFEIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMIICEKEVDVKQY 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           + T       ++V++ RK L + AS  Y  +P+N + + G +G +   +    +      
Sbjct: 74  TNTTE--ITFVLVEDIRKKLGIIASNYYD-YPQNKIKIVGITGTNGKTTSSFILENILEK 130

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++      + I         TTP  + L K +     +G  +  +E SSH L+  R+D +
Sbjct: 131 TARIGTTGNRILDEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEVSSHALEIGRVDML 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--------------PAIIYA 248
           +  +  FTNL +DH+D+H+T + YFNAK ++F  L    S                    
Sbjct: 191 QFDSAIFTNLTQDHLDFHKTMENYFNAKKKMFSMLRNNNSQGVGVINIDDEYGAKIYSEK 250

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D     +  R  NA      + Y    + +   +     K +  +     ++ F   L 
Sbjct: 251 KDNNYISISVRNENADIWGDILNYTNNGMKIKINLENYLEKNKHNLKNSDGEYKFEINLI 310

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE+ +YN L      +++GI+ ++++E L+++ VVPGRFE +       RI VD+AHT +
Sbjct: 311 GEYNLYNVLGCVASALSLGIEMSVIVEKLKEMPVVPGRFETIKNELE-ARIVVDFAHTDD 369

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L  I K ++ IT  R+I +FG GGDRD  KRP M K A   +D  I+T DNPR+E+P  
Sbjct: 370 GLLNIGKTLKQITDKRVITIFGAGGDRDHEKRPKMAKAAAKFSDYIILTSDNPRTENPVN 429

Query: 428 IRAEIIHG-------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           I A+I  G          ++   +R  AI+  I+ML K D L++AGKGHET  I+   EK
Sbjct: 430 ILADIEKGLIDEKYPFDKYLIISDRERAIKYGIKMLEKDDSLLIAGKGHETYQIIGT-EK 488

Query: 481 KMSVDCDIIREILGLI 496
               D +I+R+IL  +
Sbjct: 489 THFDDREIVRKILEEM 504


>gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
 gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
          Length = 512

 Score =  314 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 249/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++ 
Sbjct: 28  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLA 87

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 88  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLI 147

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503

Query: 489 IREILGL 495
            +++L L
Sbjct: 504 AQQLLEL 510


>gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
 gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
          Length = 484

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 229/502 (45%), Gaps = 35/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLF 59
           MKL +LI            +      + +I+ ++SD+R  ++AG +FV I G   DGH  
Sbjct: 7   MKLYELIK----------GVAETSLPDMEISGITSDTRAEVKAGGMFVCIKGKTFDGHDA 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
             Q + +G   +V      L+            +VV +TR    +  +  +G     +  
Sbjct: 57  AQQMLDKGCAVVVCERDLGLER----------QIVVSDTRAAFPMLCAAWFGHPERELEL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++ + ++++    G     IG   + I         TTP P  L +    
Sbjct: 107 IGVTGTNGKTTITTVIKKVLSGFGCKVGLIGTCQNEIGEEIIPTARTTPEPYDLFELFRR 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  G  +  +E SS GL+Q R+ G     G FTNL +DH+D H T + Y+ AK  LF+ 
Sbjct: 167 MADAGCKYTVMEVSSQGLEQKRVQGCHFKVGVFTNLTQDHLDVHGTMENYYQAKKMLFDI 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  AII  DD Y +   K            G        + V       +      
Sbjct: 227 ----SDSAIINIDDEYGRRYAKEIPCPYKSYSVNGSADFM--AQDVMLGTAGVKYVFDDG 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +  F +PG F V N+L        +G      +   EK+  V GR E V T     
Sbjct: 281 RVKKNVSFNMPGLFNVSNSLAVIACMEVLGYTPCQTIREFEKIQGVRGRAEIVPTGR-DF 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DYAHT ++L  +L  I+    G++  +FGCGG+RD+ KR  M   A + AD  IVT
Sbjct: 340 TVICDYAHTPDALINVLSAIKEGAKGKVKCLFGCGGNRDRTKRAPMAAAAAEHADFLIVT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDP++I  +++ G+ G    ++   +R EAI  A++   K D++V+AGKGHE  
Sbjct: 400 SDNPRNEDPDEIINDVMEGLKGKDTPYVRITDRREAIHWAVKNAEKDDIIVLAGKGHEDY 459

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+  G K    + +++ E L 
Sbjct: 460 QILAGGVKIHFDEREVVAEALR 481


>gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
          Length = 487

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 149/501 (29%), Positives = 239/501 (47%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++YK     +       +      +  +  +SR +    +FVAI G+  DGH +I  
Sbjct: 4   LIDILYKVTINAV-------VGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIEN 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI QGA A+V            T++     +VV+++   L++ AS  YG       ++ V
Sbjct: 57  AIKQGAIAVVCE------YLPKTLKEGISYIVVEDSSIALAIMASNYYGNPSSNLKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS + Q+ +++G     +        +       TTP  + + + LS +++
Sbjct: 111 TGTNGKTTIASLLFQLFKKAGYKVGLLSTVVIKVDNKDYKATHTTPDSLTINRYLSEMNN 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GV    +E SSHG+ Q R  G+    G FTNL  DH+DYH+T   Y + K   F + L 
Sbjct: 171 EGVEFCFMEVSSHGIHQKRTQGLDFAGGIFTNLSHDHLDYHETFAEYRDVKK-SFFDNLS 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + A+  ADD     +++       +     Y      + +              +  D
Sbjct: 230 SSAFALTNADDKNGAIMLQNTKAKQYKYGLKNYANYKAQILENSFSGMLL------KIND 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D    L G F   N L        +G++   +L  + +L  V GRF+    +       
Sbjct: 284 SDVWTRLIGGFNASNVLAIYATAELLGLEKTEILRLISELESVSGRFQ-YLISEENITAI 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I +I +     I V GCGGDRD  KRP MG IA  L+  AI T 
Sbjct: 343 VDYAHTPDALKNVLETINSIRTKNEELITVIGCGGDRDATKRPKMGHIASALSTKAIFTS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+E PE I  +I  G+        +   +R +AI+TA ++ N  D++++AGKGHET 
Sbjct: 403 DNPRTEVPELIIEDIEKGVEPQNFKKTLSIVDRKQAIKTACQLANAGDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NGE+    D  I++ +L
Sbjct: 463 QEI-NGERTDFDDFKIVKNLL 482


>gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
 gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
          Length = 471

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 162/474 (34%), Positives = 233/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+V  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +     +++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGAALSLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +       ADDA  +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQAEHKIIN--ADDAVGRRWLSQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G+QG ++  ++V    N   +       +      L G F V N LVA    +A+
Sbjct: 239 GNIPTGWQGPWLSTREVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L     L  V GR E          + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLTQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKR +MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRSLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGRAQAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+++AGKGHE   +V N       D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVM 470


>gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 495

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 160/495 (32%), Positives = 233/495 (47%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+   +   E  + E++ DSR   AG +FVAI G++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRSLLAPLGIDAPECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSV 129
           +  +       +  +    P++ V +    LS  A + Y        ++ VTGT+GK++ 
Sbjct: 64  IAEAQGEADSGTVQVIHGVPVVYVSDLNNKLSQLAGQFYHHPGGQLRLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q     G  S  +G            +  TT S + +   L  L  +G T  ++E
Sbjct: 124 TQLLAQWAHGLGEISAVMGTVGNGLLGHVAPSENTTGSAVDIQLDLQQLVQKGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +      FTNL RDH+DYH   + Y  AK  LF     K+      A
Sbjct: 184 VSSHGLVQGRVAALPFEVAVFTNLSRDHLDYHGDMEHYEAAKWLLFSSHNVKQQIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   ++ + R   A    +       +QG+++   ++        VT            
Sbjct: 242 DDDVGQKWLSRLPQAVAVTMENRLPENWQGRWLSASEIKYHDKGVSVTFESSWGGGTIDS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L+A    +A+G     +LE    L  V GR E          + VDYAH
Sbjct: 302 PLMGAFNVSNLLLALSTLLALGYPLKKLLETASCLEPVCGRMEVF-NAPDKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    GR+  VFGCGGDRD+GKR +MG +A   AD  I TDDNPRSE+
Sbjct: 361 TPDALEKALLAARLHCKGRLWCVFGCGGDRDKGKRSLMGSVAEQWADYVITTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ G       I    R+EA+ +AI    + DV++VAGKGHE   +V +    
Sbjct: 421 PQAIVDDILTGFIDPGRAIVIHGRVEAVTSAIMQAKQDDVVLVAGKGHEDYQLVGHRRLD 480

Query: 482 MSVDCDIIREILGLI 496
              D   +  +LG+I
Sbjct: 481 Y-SDRLTVARLLGVI 494


>gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 531

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 154/502 (30%), Positives = 251/502 (50%), Gaps = 36/502 (7%)

Query: 9   KDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  +L++ L    +    +  +  ++  S  + +G +FVA+ G + DGHL+I +AI +G
Sbjct: 10  KNLAQLLSGLKYLRIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERG 69

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A  +V+  A                + V +TR  L+  A+  Y     N  ++ +TGT+G
Sbjct: 70  AAVVVLEDAVE-------PTPGVVCVQVPDTRLALAHMAAAFYDHPSCNLTVVGITGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  ++ I Q SG     IG  +    S  + + +TTP  + L   L+ + +  V  
Sbjct: 123 KTTTSYLLEAIWQASGAQVGVIGTVNCRFGSQVRSSPVTTPESLDLQDLLAEMRAAAVDC 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--- 241
             +E SSH LD  R+  ++  AG FTNL +DH+DYH   ++YF  K RLF ELL      
Sbjct: 183 AIMEVSSHALDLKRVQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDG 242

Query: 242 -SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A+I  DD + ++++ +              G  I  + +   H   Q  +       
Sbjct: 243 PQLAVINRDDPWGQKLLPQTSPPVLTYGF--AAGADIRPEDITLTHQGIQARLHTPYGRL 300

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + PL G + +YN L A+G  + +GI    V+  L  +  V GR E V    +   + V
Sbjct: 301 DIVSPLMGRYNLYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAPGQPL-VLV 359

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE +L  ++ +   RII VFGCGGDRD+ KRP+MG++    +D+ I+T DNP
Sbjct: 360 DYAHTPDALEKVLAALKALDFDRIITVFGCGGDRDRRKRPLMGQVVARGSDVVIITSDNP 419

Query: 421 RSEDPEKIRAEIIHGI-----------------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           R+E+P  I  +I+ G+                  G++   +R +AIR AI + N  +V++
Sbjct: 420 RTEEPLAIIEDILAGLREMNCPRLDVSEAREGHRGYLVIADRRQAIRQAIAIGNPGEVIL 479

Query: 464 VAGKGHETVHIVTNGEKKMSVD 485
           +AGKGHET  I+    +    D
Sbjct: 480 LAGKGHETYQILGT-RRIHFDD 500


>gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 512

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 168/482 (34%), Positives = 258/482 (53%), Gaps = 22/482 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDG---HLFIPQAIAQGAEAIVVSSA--YSLQDFSAT 85
           + +S DSR +  G +F+     + DG     F+ +AIA+GA  +V S     S+ +    
Sbjct: 33  SGISDDSRKVSPGDLFL----LRMDGPLQEKFLDEAIAKGAALLVASRRHLPSVLERRQV 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
                P+ VV+N ++   + AS  YG+      ++ VTGT+GK++ +  V+ +  RSGL 
Sbjct: 89  SGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTNGKTTSSFLVRSMLDRSGLR 148

Query: 144 SFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG           +   TTP  ++L ++     + G+  +S+E SSH L Q R+ G 
Sbjct: 149 AGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLVAMSMEVSSHALSQDRVAGT 208

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMR--LFEELLPKESPAIIYADDAYSKEVMKRA 260
              A  FTNL RDH+DYH+T + YFNAK R   +        PA+I ADD Y + + ++ 
Sbjct: 209 FFSAVHFTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGSLPPAVINADDPYGRILAEQI 268

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT--ISVEGKDFDFLFPLPGEFQVYNALVA 318
              G R L      + + +  + ++ +   +   +SVEG+       LPG+F + N + A
Sbjct: 269 ARRGDRRLLTYGHSERLSIHPLESVISLDGIKGALSVEGRRISVDSTLPGDFNLQNIMGA 328

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G  +A+GI    V   ++ L  VPGRFE          + VDYAHT ++L+ IL  +R 
Sbjct: 329 VGCALALGISPEAVEAGIQSLPGVPGRFERA-NPGGKFAVIVDYAHTDDALKNILSALRP 387

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
           +T GR+I VFGCGGDRD+GKRP MGK+A +L+DI +VT DNPR+EDPE I  EI  G+  
Sbjct: 388 LTPGRVITVFGCGGDRDRGKRPRMGKVAGELSDIVVVTSDNPRTEDPEFIIDEIEPGLNM 447

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               ++ + +R  AI  A+ +    D +++AGKGHE   I+ +  K    D +  REIL 
Sbjct: 448 TGRSYLREVDRRTAIARALSLAQPGDAVLIAGKGHEPYQIIGH-AKSHFDDRETAREILR 506

Query: 495 LI 496
            +
Sbjct: 507 SM 508


>gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
 gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
          Length = 479

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 160/484 (33%), Positives = 253/484 (52%), Gaps = 23/484 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
                  +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  
Sbjct: 2   SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVLVITDNKK 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++            ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q  
Sbjct: 62  NIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113

Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              G  +  IG         ++       LTT   +   K    L+  G+ ++  EASSH
Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D   
Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V    HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ 
Sbjct: 234 IEFVKDYLHNHNIKFITVGTKGDLE-ITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQA 292

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A      IG     V++ L ++  V GR E +        I+VDYAHT ++LE  
Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348

Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRA
Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408

Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           EII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D ++
Sbjct: 409 EIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467

Query: 489 IREI 492
           +R+ 
Sbjct: 468 VRKC 471


>gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate
           ligase [Pseudomonas fluorescens SBW25]
          Length = 487

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 161/485 (33%), Positives = 239/485 (49%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   IF    R+  I E++ DSR+++AG +F+A+ G K DG   I  A+ +GA A+   
Sbjct: 3   LSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAV--- 59

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
            AY ++  +    ++ P++ V    K LS  A R YG      N++ VTGT+GK+SV   
Sbjct: 60  -AYEVEGATVLPITDVPLIPVKGLAKQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQL 118

Query: 133 VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G          Q    TTP+PI +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGQHCGIVGTLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +       TNL RDH+DYH T +AY  AK +LF     K     +  DDA
Sbjct: 179 HGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMEAYAAAKAKLFAWNDLKCRVVNL--DDA 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +++      A     S+     ++  ++        + T+     +      L G F 
Sbjct: 237 FGRQLAAEDSEARLISYSLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +      +L  L KL    GR + +G   +   + VDYAHT ++LE 
Sbjct: 297 LSNVLAAIGALLGLDYALDEILRVLPKLEGPAGRMQRLGGGKQPL-VVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R    G+++ +FGCGGDRD+GKRP+M +I   LAD  +VTDDNPRSEDP +I  +
Sbjct: 356 VLEALRPHAKGKLLCLFGCGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQIFDD 415

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G   +        R  AI   I   +  DV+V+AGKGHE    + NGE+    D   
Sbjct: 416 IRAGFNDVSKAAFVAGRGAAIAQLIASASADDVVVLAGKGHEDYQEI-NGERHAFSDLVE 474

Query: 489 IREIL 493
               L
Sbjct: 475 ADHAL 479


>gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
 gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
          Length = 491

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 232/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  + +  L G+F VYN L A    +  G+    ++  +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVMMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|15829343|ref|NP_308116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751405|ref|ZP_02776427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755693|ref|ZP_02780700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764036|ref|ZP_02789043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771309|ref|ZP_02796316.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776929|ref|ZP_02801936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781970|ref|ZP_02806977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789612|ref|ZP_02814619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801512|ref|ZP_02826519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939301|ref|ZP_03084683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208809395|ref|ZP_03251732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814085|ref|ZP_03255414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821065|ref|ZP_03261385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398185|ref|YP_002268693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217326553|ref|ZP_03442637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791222|ref|YP_003076059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226842|ref|ZP_05941123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255246|ref|ZP_05947779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK966]
 gi|21362683|sp|Q8X9Z2|MURE_ECO57 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13359545|dbj|BAB33512.1| meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767763|gb|EDU31607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014523|gb|EDU52645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000402|gb|EDU69388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357056|gb|EDU75475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359898|gb|EDU78317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365881|gb|EDU84297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370798|gb|EDU89214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376347|gb|EDU94763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208729196|gb|EDZ78797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735362|gb|EDZ84049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741188|gb|EDZ88870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209159585|gb|ACI37018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746594|gb|ACI71604.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746596|gb|ACI71605.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746598|gb|ACI71606.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746602|gb|ACI71608.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|217322774|gb|EEC31198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590622|gb|ACT69983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. TW14359]
 gi|320190392|gb|EFW65042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320642124|gb|EFX11475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647487|gb|EFX16282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652821|gb|EFX21059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320668831|gb|EFX35626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345195|gb|EGD68938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1125]
 gi|326346951|gb|EGD70685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1044]
          Length = 495

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q  T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+          +R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
 gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
          Length = 479

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 161/484 (33%), Positives = 253/484 (52%), Gaps = 23/484 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
                  +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  
Sbjct: 2   SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKK 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S+            ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q  
Sbjct: 62  SIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113

Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              G  +  IG         ++       LTT   +   K    L+  G+ ++  EASSH
Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D   
Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              V    HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ 
Sbjct: 234 IDFVKDYLHNHNIKFITVGTKGDLE-ITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQA 292

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A      IG     V++ L ++  V GR E +        I+VDYAHT ++LE +
Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKV 348

Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRA
Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408

Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           EII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D ++
Sbjct: 409 EIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467

Query: 489 IREI 492
           +R+ 
Sbjct: 468 VRKC 471


>gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
 gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 254/501 (50%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+     +    ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIAQGA  ++  +     +     R+  P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDNAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+     G  +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVAKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +   
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM 358

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 359 -VVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N       D +  +++L L
Sbjct: 478 LANETIHY-SDRETAQQLLEL 497


>gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
 gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
          Length = 499

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 256/501 (51%), Gaps = 10/501 (1%)

Query: 1   MKLQDLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+     +    ELI   L +   +     I  +  DSR I++G  FVAI G+  DG  F
Sbjct: 1   MRRNMNTHSAISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIAQGA  ++  +     +     R+  P++ +    + LS  A RLYG H   ++ 
Sbjct: 61  IDKAIAQGANVVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIG 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E  
Sbjct: 181 EHGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 239 PKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            +   AII  DDA   + +K+     G  +++     + I  ++V    +   +      
Sbjct: 241 CQN--AIINVDDAVGAQWVKQLPQAIGVSLVAKPNTAQAIWAREVAYAESGITLNFESSW 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +  +
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQRE-QKAK 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TD
Sbjct: 358 IVVDYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTD 417

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   +
Sbjct: 418 DNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQV 477

Query: 475 VTNGEKKMSVDCDIIREILGL 495
           + N       D +  +++L L
Sbjct: 478 LANETIHY-SDRETAQQLLEL 497


>gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
          Length = 479

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 196/477 (41%), Positives = 273/477 (57%), Gaps = 8/477 (1%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++   +   +  +  +++DSR ++ GW+F A+ G+K DG  +I  A+ +GA A++     
Sbjct: 1   MNPAVIGGADPDVAGMTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLT---- 56

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
              D  A I    P+++  + R+ L+  A+R Y   PE ++AVTGT+GK+SVA F +QI 
Sbjct: 57  -TPDSEARIGGRVPLVMDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIW 115

Query: 138 QRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +G  S  +G    +     +   LTTP PI L   L  L+ +GVTH ++EASSHGL Q
Sbjct: 116 ALTGQRSASLGTLGLMVDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQ 175

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RLDG+++ A +FTNL RDH+DYH +  AY  AK+ LFE ++     A++  D A  +  
Sbjct: 176 SRLDGVRIKAAAFTNLTRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSF 235

Query: 257 MKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              A   G R+LS G   G  + L    A  + Q + + V G+      PL G+FQ +NA
Sbjct: 236 ASAAGRRGHRILSYGRRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNA 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A GL IA G         L +L  V GR E V   + G  IYVDYAHT ++LE +L  
Sbjct: 296 LAALGLAIATGTPDDQATAALSRLAGVRGRMERVAVLANGAAIYVDYAHTPDALETVLNA 355

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           IR  T+G++  VFGCGGDRD GKRP+MG +   LAD  IVTDDNPRSEDP  IRA  +  
Sbjct: 356 IRPHTTGKLWCVFGCGGDRDPGKRPMMGCMVGKLADKPIVTDDNPRSEDPATIRAAALAA 415

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            PG  E G+R EAIR+A+  L   DVL++AGKGHE    +  GE +   D  + RE 
Sbjct: 416 CPGGEEIGDRAEAIRSAVSRLGPGDVLMIAGKGHEQGQEIK-GEIRPFDDATVAREA 471


>gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 491

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 190/497 (38%), Positives = 265/497 (53%), Gaps = 15/497 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL   +++                 + +++ +++DSR ++   IF AI GN+ DG  FI
Sbjct: 1   MKLTTALHR-------AGLPTDGCGHDPEVSGITADSRQVRPRMIFAAIAGNRADGRAFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ QGA AI+ +         A    +   +  D+ R  LS+ A+ L    P +++AV
Sbjct: 54  TQALQQGACAIISTPDACAAVRQAG--HDIACIATDDPRHALSVMAAALMPAMPGHVVAV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYL 177
           TGT+GK+S   FV+QI Q  G ++  IG    IS          LTTP  + +A  L  L
Sbjct: 112 TGTNGKTSTVEFVRQIWQHQGHAAASIGTLGIISPTVPALSGPSLTTPDGVTMALTLGTL 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  +++EASSHGL Q RLDG+ L A  F+NL RDH+DYH    +Y  AK+RLF+ L
Sbjct: 172 HEHGVDDIAIEASSHGLAQRRLDGVPLAAAGFSNLTRDHLDYHGDMDSYRAAKLRLFDTL 231

Query: 238 LPKESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           LP    A+  AD      + +   A   G  +  VG  G  I L +V    + Q + +  
Sbjct: 232 LPPGGLAVANADMEGATLEALRAIAVKRGLDLRLVGESGDAIRLLRVTPRPDGQVLDVEC 291

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G   +    LPG +QV N L+AAGL  +     +  +  L  L  V GR E   T   G
Sbjct: 292 NGTRHEVATRLPGRYQVDNMLLAAGLAASSRDMMSAAINCLPALVGVRGRMEHAVTLPNG 351

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +YVDYAHT ++LE +L ++R   SGR++ VFG GGDRD+GKRP+MG +A  LAD+AIV
Sbjct: 352 AAVYVDYAHTPDALERLLLSLRPHASGRLVAVFGAGGDRDRGKRPLMGAVAGRLADMAIV 411

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPR+ED   IR E++ G P   + G R +AI   +  L   DV+VVAGKGHE    V
Sbjct: 412 TDDNPRTEDAAAIRREVMAGAPDASDIGGRRQAIAEGLSRLKAGDVMVVAGKGHEQGQTV 471

Query: 476 TNGEKKMSVDCDIIREI 492
                    D  +IRE+
Sbjct: 472 GT-TVLPFDDVSVIREL 487


>gi|15799769|ref|NP_285781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 EDL933]
 gi|12512788|gb|AAG54389.1|AE005185_6 meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
          Length = 495

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N   + 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLXXVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q  T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+          +R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
 gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
          Length = 471

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 159/474 (33%), Positives = 229/474 (48%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A+V  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + +  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRDLNQHLSNLAGQFYQQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVEQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH    +Y  AK  LF     +       ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDDVGRRWLGQLPQAVAVSME 238

Query: 270 V----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G+ G ++   +V    N   +              L G F V N LVA    +++
Sbjct: 239 ENVPAGWNGPWLSATQVQYHDNGASIVFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E          + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAELLASAPNLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLDAGHAQAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI      DV+++AGKGHE   +V N       D   +  +LG++
Sbjct: 418 HGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 470


>gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 491

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  +++HG+    +    +R EAI  AI      D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 539

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 197/495 (39%), Positives = 268/495 (54%), Gaps = 14/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+       +  L+          I+ +++DSR +  GW+F A+ G K DG  FI
Sbjct: 50  MMLSNLLADTSAAPVTSLT----GMAGVHISGITADSRQVMPGWVFAALPGQKTDGRRFI 105

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA AI+  +  +            P++     R+ L+L A+RL G  P  I A+
Sbjct: 106 ADAVERGAAAILAPAGTAWPPGVPPR----PMIQDAEPRRLLALMAARLAGAQPHTIAAI 161

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+S A F++QI    G S+  +G    I+        LTTP P+ LA+ L+ L+ 
Sbjct: 162 TGTNGKTSTADFLRQIWTLLGRSAASLGTLGLIAEGFHPQDSLTTPDPVTLAQTLAMLAR 221

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+ H ++EASSHGLDQ RLDG++L A +FTNL RDH+DYH T+ AY  AK+RLF +LLP
Sbjct: 222 AGIQHTALEASSHGLDQFRLDGVRLSAAAFTNLTRDHLDYHGTEAAYRTAKLRLFADLLP 281

Query: 240 KESPAIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +PAI            +   A   G R++  G     + L  +      Q +TI  EG
Sbjct: 282 AGAPAIASPTLDQITLEALRGIARRRGLRLIIAGSPDSPLPLLAIEPHAGGQYLTIREEG 341

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PLPG FQ  N + AA +  ++G     ++  L +L  V GR E   T   G  
Sbjct: 342 TTHRINVPLPGRFQADNIITAATIAASLGKRG--IVPLLSRLTGVRGRMEQAATLPNGAA 399

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           IYVDYAHT ++LE +L  +R  TSG++ VVFG GGDRD GKRP+MG+ A   AD  IVTD
Sbjct: 400 IYVDYAHTPDALERLLDALRPHTSGKLHVVFGAGGDRDPGKRPLMGEAARTHADRLIVTD 459

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSE+P KIRA I+   P   E G+R EAI  AI  L   DVL +AGKGHE    +  
Sbjct: 460 DNPRSENPAKIRAAILAACPDAEEIGDRAEAIAHAIRSLQPGDVLAIAGKGHEQGQTIG- 518

Query: 478 GEKKMSVDCDIIREI 492
                  D  + R I
Sbjct: 519 KTVHPFDDVSVARAI 533


>gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
 gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
          Length = 486

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 150/502 (29%), Positives = 233/502 (46%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+ L+      L+   +       + +I+ +S D+R I+ G +FVA+ G K DGH F+
Sbjct: 1   MRLKVLLSGVA--LLGGFA-----DEDVEISGISYDTRTIRPGELFVALTGYKTDGHRFL 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +GA A++   A              P L+  +TR  L+  ++  +G+  + +  +
Sbjct: 54  REAVKKGAAAVICHKAPEEPG---------PWLIAADTRAALAAVSANWFGRPADELTVI 104

Query: 121 TGTSGKSSVASFVQQICQRSGL---SSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
             T       +         G+       +G   + I         TTP    + K L  
Sbjct: 105 GVTGTNGKTTTTYLLKAMLEGVLGAKVGLMGTNQNMIGEKVIPAHRTTPESWEVQKLLRD 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  G THV +E SSH L  HR+DGI    G FTNL RDH+D+H T + Y   K  LF +
Sbjct: 165 MADSGCTHVVMEVSSHALALHRVDGIAFQVGIFTNLTRDHLDFHGTMEEYRRVKGLLFRQ 224

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                    +   D  +               S       +  K +    ++ +      
Sbjct: 225 TGT-----AVLNLDDEAGRYYASIVTCPALTYSENKDQADVTAKNIRLFPDRVEFEALTT 279

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G       P+PG F +YNAL      +A+ +    V   L +   V GR E V       
Sbjct: 280 GAIARVRLPIPGGFTIYNALGVIACGLALKLPLPQVCASLAEAKGVKGRIEVVP-TPTDY 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAHT ++LE IL  +R  T GR+I +FGCGGDRD+ KRP+MG IA +LAD+ ++T
Sbjct: 339 AVIIDYAHTPDALENILTTVRDFTPGRVICLFGCGGDRDRSKRPVMGAIAAELADLVVLT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+EDPE I A+I  G+ G     +   +R EAIR A++     D +V+AGKGHET 
Sbjct: 399 SDNPRTEDPEAILADIQAGMEGSDTPCMVVPHRREAIRRALDEAKSGDTVVLAGKGHETY 458

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +    + +  + + +    G
Sbjct: 459 QEIGTRRRHL-DEREEVAAYFG 479


>gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
 gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
          Length = 491

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 142/502 (28%), Positives = 232/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +  +D        R+  A      +G     +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIGTTSDVM-AKDIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   +     D ++ +E +
Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483


>gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 497

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 138/502 (27%), Positives = 240/502 (47%), Gaps = 24/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI      L+    +  +  ++ ++N+V S+SR ++ G +F+ + G   D HL  
Sbjct: 1   MKLSHLIELLGNNLV---EVTNLNGKDPEVNDVVSNSRLLKPGNLFICLQGTSFDSHLLA 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P+   +GA A++             +  + PI+ V ++R   +     +     +    +
Sbjct: 58  PELQERGAAALIAEKKID-------VDLDIPIIYVKSSRLAEAHLYMEINDHPYKKLTTI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176
            VTGT+GK++V + +  I +     S  +G    +     + + + TTP P  LAK +  
Sbjct: 111 GVTGTNGKTTVTTLINHILETFQRKSALVGTVKNVIGDYVSTNPKNTTPGPATLAKYMKM 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + + +  +E SSHGL  HR+DG++      TN+ RDH+D+H + + Y+  K+R+F  
Sbjct: 171 AVEKNLEYFVMEVSSHGLAMHRVDGMRFDVAVLTNVTRDHLDFHASFEDYYRTKLRIFNL 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                 P      ++ +  +          +           ++ +         T+   
Sbjct: 231 ----LKPVGKAVVNSDNVNIGDIKLPRDKIITYGFGNESDFRMENLEISRTGMYFTVETP 286

Query: 297 GKDFDFLFPLPGEFQV-YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSR 354
                 ++         YN         ++  D+  +LE +     VPGRFEFV      
Sbjct: 287 FGSKHKVYTRLVGEHNAYNVTATIATMESLNYDTEHILEAISTFSGVPGRFEFVEEATKY 346

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  + VD+AHT ++LE +LK  + ++ GRII+VFG GGD D+GKRP+MG+IA   AD+ I
Sbjct: 347 GFDVLVDFAHTPDALEKLLKTAKKLSEGRIIIVFGAGGDADKGKRPLMGEIASRFADVVI 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T D+P+ EDPE+I  +I  GI     ++   +R EAI  A+ + N+QD +++AG+GHE 
Sbjct: 407 LTSDDPKKEDPEEILNDIEAGISKTKPYLVIPDRREAISVALTLANRQDTVLIAGRGHED 466

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
                +       D  +++EIL
Sbjct: 467 YQAFADYVVA-FNDKRVVKEIL 487


>gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 482

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 212/494 (42%), Positives = 298/494 (60%), Gaps = 18/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L                    +  I  +  DSR   AG++F A+ G++ DG  F+
Sbjct: 1   MKLSKLAEDL---------ATGQTTSDPDIAGLCVDSRETGAGFLFAALAGSRADGAGFV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA AI+             I +  P+L   + R+ ++L A+R +G  PE+++A+
Sbjct: 52  ADAEARGAAAILAGEGAE-------IATTLPVLRAADPRRAIALMAARFHGAQPEHVVAI 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGT+GK+S+A+F +QI  R GL++  +G T  +S    +   LTTP PI L + ++ L+ 
Sbjct: 105 TGTAGKTSIATFTRQIWARCGLAAASVGTTGVVSPSRDEYGSLTTPDPIALMRLMAELAG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH ++EASSHG+DQ RLDG++L A +F+NLG DH+DYH   ++YF AKMRLF  LLP
Sbjct: 165 EGVTHAAMEASSHGIDQRRLDGVRLAAAAFSNLGHDHLDYHPDIESYFAAKMRLFTTLLP 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S   +  A + G +V++VG  G F+ LK++     +Q   I  EG+ 
Sbjct: 225 KGAPAVIFADDRWSGRAIDVATSVGAKVMTVGRGGNFLTLKRLELERQRQIAEIEAEGRI 284

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + PL GEFQ+ NALVAAGL IA G+ +A  L  LE L    GR +  GT + G  ++
Sbjct: 285 HRVVLPLAGEFQMANALVAAGLAIATGVATADALAALEHLKGAAGRLDLAGTTADGAPVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +LE +L  +R  T+GR++VV GCGGDRD+ KRP+MG+IA  LADI IVTDDN
Sbjct: 345 VDYAHKPEALENVLAAVRPFTTGRVVVVIGCGGDRDRAKRPMMGEIAARLADIVIVTDDN 404

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRAEI+    G  E G+R  AIR A+      D +V+AGKGHE    V  G 
Sbjct: 405 PRSEEPAAIRAEIMTAANGAREIGDRRAAIREAVASARTGDTVVIAGKGHEVGQTVA-GI 463

Query: 480 KKMSVDCDIIREIL 493
                D + +R  L
Sbjct: 464 THHFSDHEEVRAAL 477


>gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           chlorochromatii CaD3]
 gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 516

 Score =  313 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 166/513 (32%), Positives = 244/513 (47%), Gaps = 29/513 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
            L  L    F   +  + +         E  I  VSSDSR +  G +FVA+ G   DGH 
Sbjct: 12  NLPSLTVGAFITALQAVEVTEQAGACHMEHCITAVSSDSRDMIEGALFVAVRGFCTDGHR 71

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           FI  AI +GA  IV        +   +I      L V + RK L+  A+  YG   +   
Sbjct: 72  FIESAIERGACIIVCE------ELPQSITHGCLYLRVIDARKALAHVAALFYGNPAKQLR 125

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
            + VTGT+GK++ +  + ++     + S  IG               TTP    L    +
Sbjct: 126 FIGVTGTNGKTTTSRIITEMLTAFAVPSGYIGTNLCRIGKRDIPLERTTPEAHELHALFA 185

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G   V +E SSH L   R+ G++  A  FTNL +DH+D+H T QAY  AK  LF+
Sbjct: 186 LMVEAGCKAVVMEVSSHALLLQRVYGLRFDAALFTNLTQDHLDFHHTMQAYAEAKQLLFD 245

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAI 285
           + L  +  AI+  DDAY+  +++R   +                    G+    +   A 
Sbjct: 246 Q-LQPDGVAIVNTDDAYAPLMLQRVAPSQRVCCTLQANVPSVLQCPQYGQDFQAEVRHAS 304

Query: 286 HNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               ++ +     + +     L G + V N L AA     +G+  A +   L  +H V G
Sbjct: 305 LAATEMELRFPKGETELLTVGLAGSYNVMNVLQAAATGYCLGLQPAAICRALAAVHSVDG 364

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIM 402
           R E VG  +   +I+VDYAHT ++L+  L+ ++ +     R++V+FGCGG+RD+ KRPIM
Sbjct: 365 RMERVGRPNLPYQIFVDYAHTPDALQKALETLKALKGEEARLMVLFGCGGNRDRLKRPIM 424

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQD 460
           G IA  LAD+ I+T DNPR E P+ I  EI  G+ G       +R EAIRTAI  L   D
Sbjct: 425 GSIAASLADVVILTSDNPRDESPDAILDEIEQGMQGAAHQRIADRAEAIRTAISQLQAGD 484

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VL++AGKGHE    V  G++    D + +   L
Sbjct: 485 VLLIAGKGHERYQEVA-GKRTYFSDQEEVGRCL 516


>gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 499

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 166/497 (33%), Positives = 243/497 (48%), Gaps = 24/497 (4%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              EL+  L I      +   +  +  DSR IQ+G++FVAI G K DGHL+I  A+ +GA
Sbjct: 2   TLAELVAPLKIIARGGNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A+V++          T+      + VD+TR  L   A+R Y      +  + VTGT+GK
Sbjct: 62  VAVVLAQE-------RTLPPGVAWVRVDDTRLALGQLAARFYDYPSRKLRLIGVTGTNGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    +Q I +  G  +  +G               TTP  + L   L  + S     V
Sbjct: 115 TTTTHLIQAILEAGGRPAGLVGTIGNRLGDRVLPAEHTTPESLDLQHLLYQMVSLQARAV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----E 241
            +E SSH L  HR+ G +     FTNL +DH+D+H   + YFN K RLF+ L        
Sbjct: 175 VMEVSSHALALHRVAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGP 234

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A+I  DD Y   +                 G  +  + +          ++  G +  
Sbjct: 235 KYAVINGDDPYGSRLAALTPVPVVTYGC--TPGCQVRARDIHLETGGSTSLVTWPGGEAA 292

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G + +YNAL A  + +  GID  + +  L +   VPGR E V        + VD
Sbjct: 293 MELRLTGRYNIYNALAALAVALQEGIDPQVAIRALGRFKGVPGRLERVDQGQ-PFTVVVD 351

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + LE +L+  R +T GR++VVFGCGGDRD+GKRP+MG+ A  L+D +I+T DNPR
Sbjct: 352 YAHTPDGLENVLRAARQVTRGRLLVVFGCGGDRDRGKRPLMGRAAARLSDYSIITSDNPR 411

Query: 422 SEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           SEDPE I A+I+ G+       +    +R  AI  A+ +    D++V+AGKGHET  IV 
Sbjct: 412 SEDPEAIIADILPGVREVPGASYQVLVDRRRAIAAALALARPGDMVVIAGKGHETYQIVK 471

Query: 477 NGEKKMSVDCDIIREIL 493
           + +     D  + RE L
Sbjct: 472 D-KTLPFDDRQVAREEL 487


>gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio cholerae]
          Length = 495

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 156/487 (32%), Positives = 251/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+ EDG  FI +AIAQGA  ++ 
Sbjct: 11  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLA 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 71  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 130

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 131 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 190

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 191 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 248

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 249 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 308

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 309 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 367

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 368 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 427

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 428 MVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 486

Query: 489 IREILGL 495
            +++L L
Sbjct: 487 AQQLLEL 493


>gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani
           ATCC 19707]
 gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
 gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
          Length = 519

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 152/502 (30%), Positives = 241/502 (48%), Gaps = 21/502 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+ +          +     +ER+I+ +S DSR +  G +F A  G +  GH  I  
Sbjct: 22  LSDLLAEW---------VSIGAVQERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGA 72

Query: 63  AIAQGAEAIVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           A+ QGA AIV       S    +     N P++ + +    + + A R Y +      +L
Sbjct: 73  AVDQGAAAIVYDPVIPVSPAIQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVL 132

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV+ F+ Q   R G+    +G          Q + LTTP  + + + L+ +
Sbjct: 133 GVTGTNGKTSVSHFLAQALHRQGIPCGLVGTLGKGLVGTLQPSPLTTPDAVTVQEQLAAM 192

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++  + +  +E SSH L+Q R++G+      FTNL R+H+DYH     Y  AK RLF + 
Sbjct: 193 AAARIRYTVLEVSSHALEQGRVNGVVFNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQP 252

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             + +   I    A    +             +      +   ++        +T+    
Sbjct: 253 ELRHAVINIDDV-AGRAFLANLPSEVAAISYGITNPQANLWASELHCDRYGIAMTVQSAW 311

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +      L G F  YN L A G  + +G+     L+ L ++  V GR E  G       
Sbjct: 312 GEGQLTCSLLGRFNAYNLLAALGGLLVVGMPFTEALQRLSQVRAVAGRMEAFGEKEGEPL 371

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VDYAHT ++LE +L +++      GR+  VFGCGGDRD+GKRP+MG  A  LAD  I+
Sbjct: 372 LVVDYAHTPDALEQVLCSLQMHLGPGGRLWCVFGCGGDRDRGKRPLMGAAAERLADFVIL 431

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPR EDP +I  +I+ GI       +  +R EAI  A ++   +D++++AGKGHE  
Sbjct: 432 TDDNPRDEDPIQIIIDILSGIHNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKGHEEY 491

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +   E++   D + ++E L 
Sbjct: 492 QQIGA-EQRPFSDREQVQEALR 512


>gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
 gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
          Length = 484

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 159/489 (32%), Positives = 252/489 (51%), Gaps = 23/489 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
            +IN        +++  +  +S +S+ ++   +F  I G   DG+ FI  A+++GA  ++
Sbjct: 2   NIINMSHNLKQLFQQHNVKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDALSKGAVLVI 61

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +  ++            ++ V + +  L       Y K P+N++AVTGT+GKSSV S+
Sbjct: 62  TDNKKNIVIDK--------VIYVKDVQAALYEAIEIFYPKTPKNLIAVTGTNGKSSVVSY 113

Query: 133 VQQICQRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + Q     G  +  IG          +       LTT   +   K    L+  G+ ++  
Sbjct: 114 IAQTYSLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVF 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ 
Sbjct: 174 EASSHGLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +D    + V    HN   + ++VG +G    + ++      Q +  +   ++++F  P+ 
Sbjct: 234 SDIEEIEFVKDYLHNHNIKFITVGKKGDLE-ITRINGSLKGQNINFTFNNREYNFNTPII 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G FQ  N L+A       G     V++ L ++  V GR E +        I+VDYAHT +
Sbjct: 293 GSFQASNLLIAVLSIHYTGFAFDDVIDSLVEVKAVKGRMERI----DNTHIFVDYAHTPD 348

Query: 368 SLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +L   L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR+EDP
Sbjct: 349 ALAKALTELKNIKLRGSKLSVVFGCGGNRDKAKRSLMGQIAAKHADTIIITDDNPRNEDP 408

Query: 426 EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           + IRAEII GI    + E  NR EAI+  I  L + D L+VAGKGHE   I+ + +K   
Sbjct: 409 KLIRAEIISGIEKADYTEIANREEAIKYGINNLKQDDTLLVAGKGHENYQIIGD-KKLPF 467

Query: 484 VDCDIIREI 492
            D +++R+ 
Sbjct: 468 DDAEVVRKC 476


>gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
 gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
          Length = 499

 Score =  313 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 159/498 (31%), Positives = 252/498 (50%), Gaps = 16/498 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +LI          L +   +     I  +  DSR I++G  FVAI G+  DG  FI +
Sbjct: 11  LSELIAPW-------LELTDPKLASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQFIDK 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIAQGA A++  +           R   P++ +    + LS  A RLYG H   ++ VTG
Sbjct: 64  AIAQGANAVLAEADAHHAHGQVEYREAVPVMYLSELDQHLSEMAGRLYGGHHNQLIGVTG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q  +  G  +  +G T        +    TT + + +   L  L+ +G
Sbjct: 124 TNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERG 183

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SSHGL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   + 
Sbjct: 184 AQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN 243

Query: 242 SPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             AII  DDA   + +K+     G  +++     + I  ++V    +   +       + 
Sbjct: 244 --AIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEG 301

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL GEF   N L+A    +++G + + +L    KL  V GR E      +     V
Sbjct: 302 ELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VV 360

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE  L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNP
Sbjct: 361 DYAHTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNP 420

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE P+ I A+++ G+        + +R +A   A++    QD++++AGKGHE   ++ N
Sbjct: 421 RSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALKHAGAQDIILLAGKGHEDYQVLAN 480

Query: 478 GEKKMSVDCDIIREILGL 495
                  D +  +++L L
Sbjct: 481 ETIHY-SDRETAQQLLEL 497


>gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 491

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 144/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  +++HG+    +    +R EAI  A+      D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAVTKAKADDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
 gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
          Length = 491

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 231/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 487

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 158/479 (32%), Positives = 234/479 (48%), Gaps = 14/479 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G + DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S  +   +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLHSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             G            R +AI   I   N  DV+V+AGKGHE    + +G++    D   
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQE 474


>gi|237729383|ref|ZP_04559864.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
 gi|226909112|gb|EEH95030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
          Length = 495

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 166/505 (32%), Positives = 249/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +G +FVA++G++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------GAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEKMRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L+
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLA 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 AQGATVGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +  +
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVDVKYHDSGATIRFT 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   +   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTATQLQPVCGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 351 KTTVVVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV +       D      +LG+I
Sbjct: 471 YQIVGSQRLDY-SDRVTAARLLGVI 494


>gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
 gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
          Length = 921

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 161/503 (32%), Positives = 237/503 (47%), Gaps = 10/503 (1%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           K +  I    P L + L    +Q     + +++ DSR   +G +F+AI G++ DG  +IP
Sbjct: 420 KKKKRIQVADPNLSDLLGALGIQAPSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIP 479

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A++  +               PI+ +DN    LS  A   Y +  E +  + 
Sbjct: 480 QAIAQGVSAVLAEAQDVATHGEIRESHGIPIIYIDNLNAKLSKLAGHFYHQPAEKLKLIG 539

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S  +G               TT S + +   L  L 
Sbjct: 540 VTGTNGKTTTTQLLAQWAQGLGEISAVMGTVGNGLLDHVVPAMNTTGSAVDIQLELQQLL 599

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL Q R+  +  +A  FTNL RDH+DYH     Y  AK  LF    
Sbjct: 600 NQGATLTAMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEEAKWLLFSTHH 659

Query: 239 PKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             E            +   +           L   +QG+F+   ++        +  S  
Sbjct: 660 SGEKIINADDAVGQKWLSRLPDAVAVTMENTLPQNWQGRFVKTTRINYHDAGATIHFSSS 719

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PL G F V N L A    +A+G     V+     L  V GR E    N+R  
Sbjct: 720 WGEGIIESPLMGAFNVSNLLCALATLLALGYPLNAVINASSSLTPVCGRMEVFSANNRPT 779

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG +A +LAD  ++T
Sbjct: 780 -VIVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAVAEELADKVVIT 838

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DDNPRSE+P+ I  +I+ G+      I    R EA+   I   +  D+++VAGKGHE   
Sbjct: 839 DDNPRSEEPQAIIQDILSGLMDPGRAIAIEGRAEAVTNVIMQADTNDMILVAGKGHEDYQ 898

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           +V +       D   +  +LG+I
Sbjct: 899 LVGSRRLDY-SDRLTVARLLGVI 920


>gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 486

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 159/479 (33%), Positives = 233/479 (48%), Gaps = 14/479 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DDA+
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             G            R +AI   I   N  DV+V+AGKGHE    + +G++    D   
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAQLIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQE 474


>gi|50122742|ref|YP_051909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|81643886|sp|Q6D0H8|MURE_ERWCT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49613268|emb|CAG76719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 495

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+     +                + E+  DSR   AG +FVAIVG+K DG  +IP
Sbjct: 5   NLRDLLAPWVQD-----------APACALREMILDSRVAAAGDLFVAIVGHKADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AIV  +     D +       P++ + +  + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAIVAEADGEAADGTVREMHGVPVVYLSSLNQRLSALAGRFYQQPAEKLQLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S  +G         A     TT S + + + LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQALGEMSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL Q+R+  +   A  FTNL RDH+DYH   ++Y  AK  LF E  
Sbjct: 174 EQGATFAAMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWLLFAEHR 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTIS 294
             +      ADD      + +  +A    +      G +G+++   ++    N   +   
Sbjct: 234 VGQMIIN--ADDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +    L G F V N L+A    +++G     ++    +L  V GR E      +
Sbjct: 292 SSWGQGEIESRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +
Sbjct: 352 PT-VVVDYAHTPDALEKALEAARLHCQGKLWCVFGCGGDRDKGKRPLMGGIAEQLADRVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPRSE+P+ I A+I+ G+           R EA+ +AI    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             +V N       D   +  +LG+I
Sbjct: 471 YQLVGNQRLDY-SDRITVARLLGVI 494


>gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 491

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 232/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI  +   D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGNNYEVIIDRKEAIHHAITKVKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plautia stali symbiont]
          Length = 495

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 243/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P  +            R + +++ DSR   AG +F+A+ G+  DG  FIP
Sbjct: 5   NLRDLLAPWVPGALA-----------RPLRDMTLDSRAAAAGDLFIAVAGHHADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119
           QAIAQG  A++  +     D         P++ +    + LS  A R Y +      ++ 
Sbjct: 54  QAIAQGVAAVIAEAEGEASDGDIREMHGVPVIYLAQLPQRLSALAGRFYQQPADKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q     G +   +G            +  TT S + +   L  L 
Sbjct: 114 VTGTNGKTTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVPSENTTGSAVDVQHILHDLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   Q Y +AK  LF E  
Sbjct: 174 GQGATVAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQGYESAKWLLFSEHQ 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             E  AII ADD   +  +++  +A        L  G +G+++    +        V  S
Sbjct: 234 VGE--AIINADDEVGRRWLEKLPDAVAVTLSNNLQPGCRGRWLQATVIDYHDGGAHVQFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +F   L G F V N L+A    + +      ++    +L  V GR E   T   
Sbjct: 292 SSWGNGEFDSRLMGAFNVSNLLLALATLLTLDYPLDTLVASASQLQPVCGRMEVF-TAVH 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA   ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCKGQLWCVFGCGGDRDKGKRPLMGAIAEQFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSE+P  I  +I+ G+           R +A+  A+   +  D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEEPTAIINDILTGLLDPGRACVIAGRAQAVTHAVMQASADDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+ N       D D +  +LG++
Sbjct: 471 YQIIGNRRLDY-SDRDTVARLLGVM 494


>gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 495

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 161/503 (32%), Positives = 240/503 (47%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +  +FVAI G+  DG  FIP
Sbjct: 5   NLRDLLAPWVP-----------GAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A++  +    +D         P++ +    + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +   +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G +  ++E SSHGL QHR+  +   A +FTNL RDH+DYH     Y  AK  LF E  
Sbjct: 174 DKGASLAAMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAEHQ 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AII ADD   +  +++  +A    +      G  G+++   KV       +V  S
Sbjct: 234 VGQ--AIINADDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N LVA    +++      +     +L  V GR E   +   
Sbjct: 292 SSWGEGNIDSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSEDP  I  +I+ G+           R +A+   +    + D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ +       D D +  +LG
Sbjct: 471 YQIIGHQRFDY-SDRDTVARLLG 492


>gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
 gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
          Length = 491

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 230/502 (45%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
 gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
          Length = 491

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 144/503 (28%), Positives = 233/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +    +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHDREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    V++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSE+P  I  +++ G     +    +R EAI  AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
 gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
          Length = 512

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 156/487 (32%), Positives = 249/487 (51%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI +AIAQGA  ++ 
Sbjct: 28  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLA 87

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 88  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  ++V    +   +       + +   PL GEF 
Sbjct: 266 GAQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFN 325

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE    V   E     D + 
Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQ-VQANETIHYSDRET 503

Query: 489 IREILGL 495
            +++L L
Sbjct: 504 AQQLLEL 510


>gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 512

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 164/507 (32%), Positives = 250/507 (49%), Gaps = 26/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DLI +     I  L           ++ +SSDSR +  G +F+A+ G   DGH FI
Sbjct: 1   MSLADLIRQ-----IPVLEAAGGSTTSLPVSMISSDSRDVLPGALFIAVRGYSADGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+ +GA A++       +       ++ P L V++ R+ L+L A + YG   +  +++
Sbjct: 56  KSAVERGAAAVLCE-----EIPPVLPDASLPYLRVEDARQALALAARQFYGFASDALHVI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A  +  +    G+ +  IG               TTP    L      +
Sbjct: 111 GVTGTNGKTTTARLITAMLNACGIRTGYIGTNLCTFGEQQIPLDRTTPEAHILHALFRRM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G +   +E SSH L   R+ GI   A  FTNL  +H+D+H+T Q Y  AK +LFE+ 
Sbjct: 171 LDSGCSVAVMEVSSHALVLQRVYGITFHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQ- 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-------VGYQGKFIHLKKVCAIHNKQQ 290
           L  +  A+I +DD  ++E++ + +       +        G   +    + +        
Sbjct: 230 LSPQGFAVINSDDPRAEEMVSKINPEKRFCCTLDQTGRVAGDASRRFSAELIDQSIASAT 289

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +            LPG++ V N L AA +   +G+ S +V   L+ L  V GR E + 
Sbjct: 290 IRLCFPDAQQTISTVLPGQYNVMNLLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIM 349

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              R   ++VDYAHT ++L   L  +  +   + R+IVVFGCGG+RD+ KRP MG+IA++
Sbjct: 350 DRRRKEFVFVDYAHTPDALFKALSTLNALKSPASRLIVVFGCGGNRDRLKRPEMGRIAVE 409

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            AD+ I+T DNPR EDPE I  EI  GI         +R +AIRTA+ +L   DVL+VAG
Sbjct: 410 NADLVILTSDNPRDEDPEMIIDEIEKGIRVKNHKRITDRAQAIRTAVALLQPGDVLLVAG 469

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE       GEK    D + +R  L
Sbjct: 470 KGHEQYQETA-GEKSFFSDQETLRNAL 495


>gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 493

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 132/499 (26%), Positives = 222/499 (44%), Gaps = 24/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L+      L   + + P Q     + ++  DSR +Q   +FV I G   DGH + 
Sbjct: 6   MYAEELLSALP--LKKIIGMLPDQ-----VTDIVVDSRSVQPNSMFVCIKGYTVDGHDYA 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+  GA  +V      L +           ++V +T + + L A++ +    +   ++
Sbjct: 59  QKAVDGGATIVVTERELPLGET-------IAQVIVKDTDRAVGLLAAKFFDYPSKDITMI 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   +Q I    G  S   G      +    ++  TT   +   + +   
Sbjct: 112 GVTGTNGKTSVTGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRA 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFE 235
             +G   +++E SSHGL   RL G+      FTNL  DH+D+H T + Y +AK  +    
Sbjct: 172 KMEGCRLMTMEVSSHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQL 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++  ++   D    E              +  +                   + +
Sbjct: 232 GQDLEKNKFVVLNADDAWSERYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEM 291

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               +     L GEF +YN L A       G     ++E +E+L  V GR E V  +   
Sbjct: 292 SEGIYRVKMNLLGEFNIYNVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKV-CSDLP 350

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +++VDYAHT +++E  ++  +    G++I + G GG+RD+ KRP M + A   A+  I+
Sbjct: 351 VQMFVDYAHTPDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKASA-AEYVIL 409

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T D+PR ED   I  ++  G+    F   G+R EA+R AIE+    D+++ AGKGHE   
Sbjct: 410 TTDDPRYEDYNSITGDLAKGMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQ 469

Query: 474 IVTNGEKKMSVDCDIIREI 492
           I+ N  K    D +I  E 
Sbjct: 470 IIEN-TKFPHSDAEIAIEA 487


>gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
 gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
          Length = 501

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 152/483 (31%), Positives = 228/483 (47%), Gaps = 17/483 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT-- 85
             + +++ DSR +  G +F+A+ G++ DG  FI  AI QGA  I+  +     +      
Sbjct: 19  IPLKQMTLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGAAIILAEAESDQDEIELDSQ 78

Query: 86  ------IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  R    ++ V    + LS  A   Y      +  + +TGT+GK++ A  + Q  
Sbjct: 79  FARYNLDRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQLLAQWH 138

Query: 138 QRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G          Q+   TT S I + + L+    QG    ++E SSHGL Q
Sbjct: 139 NLLGGHSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVSSHGLAQ 198

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R++ ++     FTNL RDH+DYH +  AY  AK RLF  L  K          A +   
Sbjct: 199 YRVEALQYDLAIFTNLSRDHLDYHHSIAAYEAAKFRLFNALQTKAQVLNADDQVAQNWLS 258

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M           +   + +F+   KV        +       +  F   L G F V N L
Sbjct: 259 MLPNAVLVSCDPNFTSEHQFVKATKVNFSLQGAYIEFESSWGNGQFHSQLSGAFNVTNIL 318

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILK 374
           +A    + +G D A ++    +L  V GR + V   +   R  V  DYAHT ++L+  L+
Sbjct: 319 LALAGLLTLGYDLAKLVATASQLRSVTGRMQKVSAITDKNRPLVLVDYAHTPDALQKALQ 378

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             R  T G++  VFGCGGDRD GKRP+M  IA +LAD  IVT+DNPR+ED  KI AEI+ 
Sbjct: 379 AARLHTKGKLFCVFGCGGDRDCGKRPLMATIAEELADGVIVTNDNPRTEDQHKIVAEIMQ 438

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G       +   +R +AI+ AI+  +  D++++AGKGHE   I+    K    D +I  +
Sbjct: 439 GFAKPDNILVIYDREQAIQHAIKHASSADLILIAGKGHENYQIIGT-IKHHFSDQEIASK 497

Query: 492 ILG 494
            L 
Sbjct: 498 YLS 500


>gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 488

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 149/471 (31%), Positives = 217/471 (46%), Gaps = 19/471 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR I+ G +F A+ G   DG  FI +A   GA  +V                + P++ 
Sbjct: 23  LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKG-------DIGPCSVPVIE 75

Query: 95  VDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +DN  + L   A+  YG     ++  AVTGT+GK++ A+++  +  R G     IG    
Sbjct: 76  IDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGC 135

Query: 153 --ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                      +TTP P+ L    + L S+G    ++EASS GL+Q RLDG ++    FT
Sbjct: 136 TLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFT 195

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269
           NL RDH+DYH T + Y  AK  LF       +      + A                V +
Sbjct: 196 NLTRDHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSA 255

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G Q  ++  + +       +  +  +G  F       G F V N L   G  I++G + 
Sbjct: 256 KGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEI 315

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIV 386
             VL+ + KL    GR + V  +  G    VDY+HT +++   +K +        GRI +
Sbjct: 316 ETVLKEVAKLMPPAGRMQIVRDDH-GPIFAVDYSHTPDAVTQAIKALEGLAEARGGRIWI 374

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445
           V G GGDRD GKRP+MG+ A   AD  ++T DNPRSED ++I  +I  G         +R
Sbjct: 375 VVGAGGDRDHGKRPLMGQAACA-ADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIEDR 433

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +AI  A E     DV++VAGKGHE    V  G K    D +  RE L  +
Sbjct: 434 RKAIEYAAEHAAADDVILVAGKGHEDYQEVK-GVKHHFSDVEETREALRKL 483


>gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 491

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 231/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAVILDDMVHGARGNNYEVIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
 gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
          Length = 481

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 152/499 (30%), Positives = 253/499 (50%), Gaps = 32/499 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++      E+IN       + ++  I ++  DSR I+   +F A++G   DGH +I +A+
Sbjct: 3   EIFENVEYEVIN-------KGKDFVIGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAV 55

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
             GA+ ++                +   + VDN RK L + AS  +G   +   I+ +TG
Sbjct: 56  NSGAKMVIAEKK-----DITVADKDVTYIFVDNLRKHLGVIASNFFGWPQKKLKIIGITG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++ +  +  + +    ++ +IG           +   TTP  + L K L     +G
Sbjct: 111 TNGKTTSSYILDSMLE----NTSRIGTIGYKILDEEIEAPNTTPESLDLVKMLDKSLKKG 166

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V +  +E SSH L+  R+D ++  +  FTNL +DH+DYH+  + YFNAK +LF   L  +
Sbjct: 167 VEYFIMEVSSHALEIGRVDMLEFDSVMFTNLTQDHLDYHENMENYFNAKFKLFSM-LRNK 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  DD+Y + +     +     +    +   +  K     +   + ++  +G ++ 
Sbjct: 226 DAAAVNIDDSYGERIYNSNKSYKSYSI---IKDSDLKGKIEEYHNGGMKASVIFQGAEYF 282

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   L G++ +YN L   G+ + +G D   ++E ++++  VPGRFE V    +  R+ VD
Sbjct: 283 FDTKLVGDYNLYNLLGCIGVLLNLGFDIRDIIERVKRVGYVPGRFELV-NEGQDFRVIVD 341

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT N LE IL+ +R IT  R+I +FG GGDRD  KRP M + A   +D  I+T DNPR
Sbjct: 342 YAHTDNGLENILETVRKITEKRVITIFGAGGDRDNTKRPKMARAAAKYSDFVIITSDNPR 401

Query: 422 SEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +EDP +I  ++  G+         +    +R +AIR  IEM +  D L++AGKGHE   I
Sbjct: 402 TEDPAEITRQVEKGLTDIDFPKDKYTVIVDREQAIRYGIEMSDANDSLLIAGKGHEDYQI 461

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +   EK    D +  R+ L
Sbjct: 462 LGR-EKIHFDDREQARKYL 479


>gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
 gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
          Length = 490

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 233/503 (46%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+ +   E++           + ++ E+++DSR +  G  FV I G   DGH ++
Sbjct: 1   MRLTDLLERLEYEVVQGS-------EKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +   +GA+A++V       D          ++ VD+TR  L+L ++  +G   E   ++
Sbjct: 54  KEVAEKGAKAVIVEKQVEAPD-------GVTVIHVDDTRYALALMSAAYFGYPAEQLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I +  G     IG   T I   A     TTP    + K    +
Sbjct: 107 GITGTKGKTTTTYMVKSILEGVGHKVGLIGTIETLIGGKAIPASNTTPESFTIHKYFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  GI+   G FTNLG DHI      +       +  + +
Sbjct: 167 VDAGCDCVVMEVSSQGLMLHRTAGIEFEIGIFTNLGEDHIGP---NEHKDFEDYKRCKGI 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
           L  +    I   D    E + R             +   +   ++ +             
Sbjct: 224 LFTQCRLGIANVDDRWFEDVFRNATCRTETFGFSEKADLRATDVEHISRPGYLGVKYHVS 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PGEF VYN+L A  +C    + +  + + L+   V  GR E V  +   
Sbjct: 284 GLMDFDVEIDIPGEFSVYNSLTAIAVCRHFDVPAEEIKKALKVAKVK-GRIEMVKVSD-D 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  +R    GR++ VFGCGG+R + +R  MG+++  LAD  ++
Sbjct: 342 FTLMIDYAHNAMSLESLLATLRDYDPGRLVTVFGCGGNRSRTRRFEMGEVSGKLADFTVI 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P+ I  +II GI      +    +R EAIR AIE     DV+++AGKGHET
Sbjct: 402 TSDNPRFEEPQAIIDDIITGIERTDGKYTAICDRKEAIRYAIENGRPGDVIILAGKGHET 461

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G K    D  +I E+L 
Sbjct: 462 YQEIK-GVKYDMDDRVLIAEVLE 483


>gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
 gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
          Length = 512

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 155/487 (31%), Positives = 248/487 (50%), Gaps = 9/487 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L +   +     I  +  DSR I++G  FVAI G+  DG  FI  AIAQGA  ++ 
Sbjct: 28  IAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLA 87

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +     +     R+  P++ +    + LS  A RLYG H   ++ VTGT+GK+++   +
Sbjct: 88  EADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLI 147

Query: 134 QQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  +  G  +  +G T        +    TT + + +   L  L+ +G  + ++E SSH
Sbjct: 148 AQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSH 207

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +  +AG F+NL RDH+DYH T +AY  AK  LF E   +   AII  DDA 
Sbjct: 208 GLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAV 265

Query: 253 SKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + +K+     G  +++     + I  + V    +   +       + +   PL GEF 
Sbjct: 266 GAQWVKQLPQAIGVSLVAKPNTAQAIWARHVAYAESGITLNFESSWGEGELHAPLIGEFN 325

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N L+A    +++G + + +L    KL  V GR E      +     VDYAHT ++LE 
Sbjct: 326 ACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM-VVDYAHTPDALEK 384

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +R   +G++  + GCGGDRD+GKRP+M  IA   AD  I+TDDNPRSE P+ I A+
Sbjct: 385 ALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVAD 444

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           ++ G+        + +R +A   A++    QD++++AGKGHE   ++ N       D + 
Sbjct: 445 MVAGLTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHY-SDRET 503

Query: 489 IREILGL 495
            +++L L
Sbjct: 504 AQQLLEL 510


>gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 491

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 229/501 (45%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                         ++  +  V      A   V         +  K +         T+ 
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    +
Sbjct: 285 TPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI
Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET 
Sbjct: 404 YTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   +     D ++ +E +
Sbjct: 464 QIIG-KDVHHFDDREVAKEAI 483


>gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 484

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 140/504 (27%), Positives = 230/504 (45%), Gaps = 34/504 (6%)

Query: 2   KLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           KL+D+++     E++ QL        + ++  +  DSR    G +FVA+ G   DGHLF+
Sbjct: 3   KLKDILHAIPVQEVVGQL--------DVEVTSLCFDSRKANEGSLFVAVRGVHTDGHLFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI QG   I+V       +       +   ++V +T   L + A   YG       ++
Sbjct: 55  EKAIEQGCTLIMVE------EMPEKKHEDVTYMMVADTAYALGIAAGNFYGNPSRELKLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  +    G     +    + I         TTP P+ L   L  +
Sbjct: 109 GVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  +  +E SSH + Q R+ G++   G F+N+  DH+D+H+T   Y  AK + F++ 
Sbjct: 169 VDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDD- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + + A+   D+     +++            G       + +         +      
Sbjct: 228 LDRFAFALTNGDEKNGSVMLQNTFAHKKTYGLKGVADFKAKIIESHFDGMLLNIEGHEVW 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F        YN L   G  I +  ++  VL  L ++    GRFE   T+  G  
Sbjct: 288 VKLVGEFNA------YNILAVYGAAILLEQETVKVLTALSQITGAEGRFE-AITSKNGVI 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT +++  +L  I  +     +II V GCGGDRD+ KRP M ++A  ++D  I+
Sbjct: 341 GIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMSDKVII 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+EDP +I  ++  GIP           +R EAIR A  +    D+++VAGKGHE
Sbjct: 401 TSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               + NG K    D + + +   
Sbjct: 461 KYQDI-NGVKHHFDDREELEKTFN 483


>gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 488

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 149/471 (31%), Positives = 216/471 (45%), Gaps = 19/471 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR I+ G +F A+ G   DG  FI +A   GA  +V                + P++ 
Sbjct: 23  LDSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEKG-------DIGPCSVPVIE 75

Query: 95  VDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +DN  + L   A+  YG     ++  AVTGT+GK++ A+++  +  R G     IG    
Sbjct: 76  IDNLYRALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGC 135

Query: 153 --ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                      +TTP P+ L    + L S+G    ++EASS GL+Q RLDG ++    FT
Sbjct: 136 TLNGIVLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFT 195

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-RVLS 269
           NL RDH+DYH T + Y  AK  LF       +      + A                V +
Sbjct: 196 NLTRDHLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSA 255

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G Q  ++  + +       +  +  +G  F       G F V N L   G  I++G + 
Sbjct: 256 KGDQPAYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEI 315

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIV 386
             VL+   KL    GR + V  +  G    VDY+HT +++   +K +        GRI +
Sbjct: 316 ETVLKEAAKLMPPAGRMQIVRDDH-GPIFAVDYSHTPDAVTQAIKALEGLAEARGGRIWI 374

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445
           V G GGDRD GKRP+MG+ A   AD  ++T DNPRSED ++I  +I  G         +R
Sbjct: 375 VVGAGGDRDHGKRPLMGQAACA-ADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIEDR 433

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +AI  A E     DV++VAGKGHE    V  G K    D +  RE L  +
Sbjct: 434 RKAIEYAAEHAAADDVILVAGKGHEDYQEVK-GVKHHFSDVEETREALRKL 483


>gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
 gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 491

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 229/501 (45%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                         ++  +  V      A   V         +  K +         T+ 
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    +
Sbjct: 285 TPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI
Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET 
Sbjct: 404 YTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   +     D ++ +E +
Sbjct: 464 QIIG-KDVHHFDDREVAKEAI 483


>gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 491

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 230/502 (45%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V    
Sbjct: 284 VTPNESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
 gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
          Length = 487

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 147/501 (29%), Positives = 249/501 (49%), Gaps = 32/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   +         +      I  ++ DSR +    +FVAI G + DGH +I +
Sbjct: 4   LKDILYKVTLD-------KVLGNTAVAIRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+ QGA AI+  +        + I +    + V+++++ L++ A   YG       ++ V
Sbjct: 57  AVDQGAIAIICET------IPSEIINGITYIQVEDSQEALAIMADNYYGNPSAQIKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++A+ +  +   +G  +  +     +          TTP  + + + L  +  
Sbjct: 111 TGTNGKTTIATLLYNLFMAAGYETGLLSTVKIMVGKQQYKATHTTPDSLTINRYLREMVD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV++  +E SSHG+ Q R +G+    G FTNL  DH+DYH+  + Y + K + F++ L 
Sbjct: 171 AGVSYCFMEVSSHGIHQKRTEGLTFAGGIFTNLSHDHLDYHKDFKEYRDVKKKFFDQ-LS 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K + A++ ADD     +++                    + +           + ++   
Sbjct: 230 KTAFALVNADDKNGMVMLQNTSAKKVTYALKSMADHKAQILENQLQG------LLLKLDG 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L        +G+++   L+ +  L  V GRF+    ++      
Sbjct: 284 QELWVKLIGNFNAYNVLAIYATAELLGLETIETLQLISTLESVDGRFQ-YFISNTKVTAV 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I TI +G    I V GCGGDRD  KRPIMGKIA  L+  AI T 
Sbjct: 343 VDYAHTPDALKNVLETINTIRTGNEQLITVVGCGGDRDVTKRPIMGKIAAQLSTKAIFTS 402

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+E PE I  +I  G+        +   +R +AI+TA ++ N+ D++++AGKGHET 
Sbjct: 403 DNPRTEQPEAIIEQIEAGVEPIDFKKTLSITDRKQAIKTACQLANENDIILIAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  GE+    D  I++++L
Sbjct: 463 QEVQ-GERTDFDDYKIVKQLL 482


>gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
 gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
          Length = 493

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 132/499 (26%), Positives = 222/499 (44%), Gaps = 24/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L+      L   + + P Q     + ++  DSR +Q   +FV I G   DGH + 
Sbjct: 6   MYAEELLSALP--LKKIIGMLPDQ-----VTDIVVDSRSVQPNSMFVCIKGYTVDGHDYA 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+  GA  +V      L +           ++V +T + + L A++ +    +   ++
Sbjct: 59  QKAVDGGATIVVTERELPLGEM-------IAQVIVKDTDRAVGLLAAKFFDYPSKDITMI 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   +Q I    G  S   G      +    ++  TT   +   + +   
Sbjct: 112 GVTGTNGKTSVTGIIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRA 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFE 235
             +G   +++E SSHGL   RL G+      FTNL  DH+D+H T + Y +AK  +    
Sbjct: 172 KMEGCRLMTMEVSSHGLALGRLAGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQL 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +++  ++   D    E              +  +                   + +
Sbjct: 232 GQDLEKNKFVVLNADDAWSERYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEM 291

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               +     L GEF +YN L A       G     ++E +E+L  V GR E V  +   
Sbjct: 292 SEGIYRVKMNLLGEFNIYNVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKV-CSELP 350

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +++VDYAHT +++E  ++  +    G++I + G GG+RD+ KRP M + A   A+  I+
Sbjct: 351 VQMFVDYAHTPDAIEKAIEAAQPYKKGKLIFLVGTGGNRDKSKRPAMAEKASA-AEYVIL 409

Query: 416 TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T D+PR ED   I  ++  G+    F   G+R EA+R AIE+    D+++ AGKGHE   
Sbjct: 410 TTDDPRYEDYNSITGDLAKGMLHDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKGHEDYQ 469

Query: 474 IVTNGEKKMSVDCDIIREI 492
           I+ N  K    D +I  E 
Sbjct: 470 IIEN-TKFPHSDAEIAIEA 487


>gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
 gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
          Length = 495

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 211/486 (43%), Positives = 281/486 (57%), Gaps = 8/486 (1%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              EL+ + + + +      + E + DSR  +AG +F A+ G+K DG  F   A+A+G  
Sbjct: 16  TLRELVGEDADYALADPGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARGVL 75

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V  +             +   + V N R+ ++L A+R + K PE I AVTGTSGK+SV
Sbjct: 76  AVVAEAE-----RPPWFDPSVSYVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSV 130

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A+F +QI  R G +S  +G    ++        LTTP PI L + L  L+ +GVTH+ +E
Sbjct: 131 AAFARQIWARLGHASASLGTLGVVTPSGAVYGSLTTPDPIELQRTLHMLAKEGVTHLCLE 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGLDQ+RLDG++L AG FTNL RDH+DYH + +AY +AKMRLF ELLP+   A ++ 
Sbjct: 191 ASSHGLDQYRLDGVRLSAGGFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWV 250

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D      V + A +    VL +G  G  I L         Q + +  +G+ F    PL G
Sbjct: 251 DSTEGSHVAQVAADHELNVLGIGVAGAGISLLARHDEGLGQLLEVEADGRRFTLRLPLVG 310

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            FQ  NALVAAGL +  G  +   L  LE L  VPGR E VGT   G  ++VDYAH  ++
Sbjct: 311 AFQACNALVAAGLVLLTGAGAREALLALETLEGVPGRLELVGTKD-GAGVFVDYAHKPDA 369

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L   L  +R   +GR+IVVFGCGGDRD+GKRPIMG IA + AD+ IVTDDNPRSEDP  I
Sbjct: 370 LANALDALRPYATGRLIVVFGCGGDRDRGKRPIMGAIAAEKADVVIVTDDNPRSEDPAFI 429

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           RA I+   P   E G+R EAI  AI M    DV+++AGKGHET  IV +       D D 
Sbjct: 430 RAAILEAAPEAQEIGDRAEAIAAAIGMAKSGDVVLIAGKGHETGQIVGD-RTLPFSDRDT 488

Query: 489 IREILG 494
              +L 
Sbjct: 489 AVAVLE 494


>gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
          Length = 504

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 154/494 (31%), Positives = 237/494 (47%), Gaps = 14/494 (2%)

Query: 13  ELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           E I+ + +      R   +  V  DSR + AG +FVA+ G   DG+ FI  A+ QGA AI
Sbjct: 5   EAISGVRVLEAAGSRAIDVRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGAAAI 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  SA +             + +V++ R+ L+  ++ ++G+  +   + AVTGT+GK++ 
Sbjct: 65  ITDSAETFAALRERQPE-LAVALVEHGRRALAEVSAAVFGRPEQTLKLSAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           A  ++Q+ +  G  S  +G   T      +++  TTP    +    +     G T V +E
Sbjct: 124 AFLLEQMLRSVGRKSVLMGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVVME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L+Q R+ G+ +    FTNL +DH+DYH T +AYF AK R+F  +        +  
Sbjct: 184 MSSHALEQERVWGLPVDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGVGALPPRVAVIN 243

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D+   + M         +     +      + V       +              PL G
Sbjct: 244 LDSEYGDEMCHEFRGATLMTYGMGEFGNYRAENVSLALGDTRFDFVTPEGRIAMHSPLSG 303

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSN 367
              V N L A+   +A G+    V    E LH VPGRF+ V G+ + G  + VDYAHT +
Sbjct: 304 RVNVENLLAASCAALARGLTLEQVAHAAEMLHQVPGRFQVVPGSKAAGFFVVVDYAHTDD 363

Query: 368 SLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +L  ++   R       GR I +FGCGGDRD+ KRP MG+ A + +D+ +VT DNPRSE+
Sbjct: 364 ALRNLIALARESVVGHGGRAITLFGCGGDRDKTKRPKMGRAAGEDSDLVVVTSDNPRSEE 423

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P  I  E + G+      FI + +R  AI  AI      D++++AGKGHE V I  +G  
Sbjct: 424 PMTIINEALLGVRETQTTFIVEEDRRAAIEVAIRSAKPGDIVLLAGKGHEKVQIFADGTV 483

Query: 481 KMSVDCDIIREILG 494
               D      +L 
Sbjct: 484 -PFDDVAEAERVLR 496


>gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
          Length = 479

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 159/484 (32%), Positives = 252/484 (52%), Gaps = 23/484 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
                  +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  
Sbjct: 2   SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKK 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++            ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q  
Sbjct: 62  NIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113

Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              G  +  IG         ++       LTT   +   K    L+  G+ ++  EASSH
Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D   
Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V    HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ 
Sbjct: 234 IEFVKDYLHNHNIKFITVGTKGDLE-ITRLNGSLKGQNINFTFNNREYNFNTPIIGSFQA 292

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A      IG     V++ L ++  V GR E +        I+VDYAHT ++LE  
Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348

Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRA
Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408

Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            II GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D ++
Sbjct: 409 AIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467

Query: 489 IREI 492
           +R+ 
Sbjct: 468 VRKC 471


>gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 484

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 141/504 (27%), Positives = 230/504 (45%), Gaps = 34/504 (6%)

Query: 2   KLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           KL+D+++     E++ QL        + ++  +  DSR    G +FVA+ G   DGHLF+
Sbjct: 3   KLKDILHAIPVQEVVGQL--------DVEVTSLCFDSRQANEGSLFVAVRGVHTDGHLFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI QG   I+V       +  A        ++V +T   L + A   YG       ++
Sbjct: 55  EKAIQQGCTLIMVE------EMPAEKSEGVTYMMVADTAYALGIAAGNFYGNPSRELKLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +  +    G     +    + I         TTP P+ L   L  +
Sbjct: 109 GVTGTNGKTTIATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  +  +E SSH + Q R+ G++   G F+N+  DH+D+H+T   Y  AK + F++ 
Sbjct: 169 VDEGCDYCFMEVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDD- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + + A+   D+     +++            G       + +         +      
Sbjct: 228 LDRFAFALTNGDEKNGSVMLQNTFAHKKTYGLKGVADFKAKIIESHFDGMLLNIEGHEVW 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F        YN L   G  I +  ++  VL  L ++    GRFE   T+  G  
Sbjct: 288 VKLVGEFNA------YNILAVYGAAILLEQETVKVLTALSQITGAEGRFE-AITSKNGVI 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT +++  +L  I  +     +II V GCGGDRD+ KRP M ++A  ++D  I+
Sbjct: 341 GIVDYAHTPDAVANVLSTINNLRKKEQQIITVLGCGGDRDKTKRPEMAEVAAKMSDKVII 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+EDP +I  ++  GIP           +R EAIR A  +    D+++VAGKGHE
Sbjct: 401 TSDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               + NG K    D + + +   
Sbjct: 461 KYQDI-NGVKHHFDDREELEKTFN 483


>gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
 gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
          Length = 507

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 138/513 (26%), Positives = 232/513 (45%), Gaps = 29/513 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++L+        +      +  ++  I  ++ DSR    G++F+A+ G   DG  ++
Sbjct: 1   MQLKNLLAALEQPPTHIYGANTLPEQDT-ILGLAYDSRKAAPGYLFIAVPGVHTDGRRYV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A   GA   +           + I    P + V++ R  L+  A   YG        +
Sbjct: 60  ADAAQHGAVVAL------GAPLPSAIDLPIPYIEVEDVRTALADLACAFYGFPARELCTI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALS 175
            VTGT GK++ ++ +  +   +G  +  +   +       +A   R +T   + + + L 
Sbjct: 114 GVTGTDGKTTTSNIISTLFDAAGRRTGMMTTANFKLNGQEWANATRQSTLEALEIQEFLR 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +     TH  +E++SHGL+  R+ G     G  TN+  +H+D+H+T  AY  AK RLFE
Sbjct: 174 KMVEMQATHAVIESTSHGLELQRVRGCAFDVGVVTNITHEHLDFHKTLDAYRRAKARLFE 233

Query: 236 E------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                           I   D  S EV+K  +     +         +    +    ++ 
Sbjct: 234 MLDPEQDKGQGYRKVAILNKDDSSYEVLK-PYCRVPILDYGIETDAAVRAVDLHLQASRT 292

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              + +   +     PL G F V N L A     + GI   ++ + L  +  VPGR E  
Sbjct: 293 AFRLILPDAECQIETPLIGRFNVSNCLAAIATAYSQGIPLDVITQTLATIKGVPGRME-H 351

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               +   + VDYAHT++SL+ +L  +R +T+G+++VVFG  G+RD+ KRP+MG +A  +
Sbjct: 352 IDEKQNFSVIVDYAHTADSLQKVLAILRPVTTGKLMVVFGSAGERDRQKRPVMGSVAAQM 411

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDV 461
           +D  ++TD++PR ED E I  EI  G           F+   +R EAI TA       D 
Sbjct: 412 SDFFVITDEDPRDEDRESILREIAVGAEQAGKQEGSDFLCIADRREAIATAFSRAQPGDT 471

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +++AGKGHE   I+   +K    D  + RE L 
Sbjct: 472 VLLAGKGHEQSIIIGR-DKLPWDDRQVAREELR 503


>gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
          Length = 491

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 234/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
 gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
          Length = 479

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 160/484 (33%), Positives = 253/484 (52%), Gaps = 23/484 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
                  +++  +  +S +S+ ++   IF AI G   DG+ FI  A+++GA  ++  +  
Sbjct: 2   SHNLKQLFQQHNVKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKK 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++            ++ V + +  L       Y K P++++AVTGT+GKSSV S++ Q  
Sbjct: 62  NIVIDK--------VIYVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTY 113

Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              G  +  IG         ++       LTT   +   K    L+  G+ ++  EASSH
Sbjct: 114 SLLGKKAASIGTIGVEIFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D   
Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V    HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ 
Sbjct: 234 IEFVKDYLHNHNIKFITVGTKGDLE-IIRLNGSLKGQNINFTFNNREYNFNTPIIGSFQA 292

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A      IG     V++ L ++  V GR E +        I+VDYAHT ++LE  
Sbjct: 293 SNLLIAVLSIHYIGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348

Query: 373 LKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L  ++ I     ++ VVFGCGG+RD+ KR +MG+IA   AD  I+TDDNPR EDP+ IRA
Sbjct: 349 LTELKNIKLRDSKLSVVFGCGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRA 408

Query: 431 EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           EII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D ++
Sbjct: 409 EIISGIGKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467

Query: 489 IREI 492
           +R+ 
Sbjct: 468 VRKC 471


>gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
 gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
          Length = 491

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 233/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+     ++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
 gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
          Length = 491

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 229/501 (45%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                         ++  +  V      A   V         +  K +         T+ 
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    +
Sbjct: 285 TPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI
Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET 
Sbjct: 404 YTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   +     D ++ +E +
Sbjct: 464 QIIG-KDVHHFDDREVAKEAI 483


>gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
 gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
          Length = 483

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 156/502 (31%), Positives = 237/502 (47%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+                   +  ++++ +DSR ++ G +FVA  G   DG L+I
Sbjct: 1   MKLTQLLEPWIK----------RDIIDGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
                +   +  V+  Y   +    I   +  P + +    + L   A R +    + + 
Sbjct: 51  ----EKAVASGAVAVVYEPNNLPQGITLPTGIPCIAIPQLAEKLGEIAKRFFNNPSQFLG 106

Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALS 175
              VTGT+GK+++A  + Q     G  S  IG          +    TTP  + L + + 
Sbjct: 107 LTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLMH 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G+  V +E SSH L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLFE
Sbjct: 167 QYKEGGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFE 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   AII  DD +   +         +V    +Q   +   +        ++ +  
Sbjct: 227 RAELQW--AIINQDDDFQDLMSNVLKTHVKKVTYGMHQNCDVKALQWNMDITGTEIEVKS 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                       G+F +YN+L      +A G +   V++ + +L   PGR E V  +   
Sbjct: 285 PWGHHLLKIKALGKFNIYNSLAVYSSLLASGYNPEKVVQVMAELKAAPGRMEIVAQSPY- 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  ++
Sbjct: 344 --VLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVI 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPRSEDPE I  EI  GIP      +  NR EAI  A+      D++++AGKGHE+ 
Sbjct: 402 TSDNPRSEDPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESY 461

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             + N  K +  D +++R ++ 
Sbjct: 462 QQIGN-TKHVFSDQEVVRRLMN 482


>gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
 gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
          Length = 499

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 188/499 (37%), Positives = 270/499 (54%), Gaps = 13/499 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L                    +  I  +++DSR ++ G++F A+ G K DG  FI
Sbjct: 1   MRLSQLRPSRAEADPGAADQARPAGADPDIAGLTADSRAVRPGFVFAALPGVKADGRAFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILA 119
             A+A+GA A++      L   S  +    P       R   +  A+  +G + PE ++A
Sbjct: 61  ADALAKGAVAVLAPEGTELPAGSTALLLTDPQ-----PRLAFARMAAAFHGGRQPETVVA 115

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLS 178
           VTGT+GK+S   F  QI  R GL +  +G    +         +TTP P+ L + L+   
Sbjct: 116 VTGTNGKTSTVQFAAQIWARMGLPAGSLGTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAK 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ H+++EASSHGL+Q RLDG+ + A  FTNL  DH+DYH T +AY +AK  LF+ +L
Sbjct: 176 DAGIDHLAMEASSHGLEQFRLDGVAIKAAGFTNLTLDHLDYHGTMEAYRDAKALLFQRVL 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P    A++ AD              G RVLS G  G  + +  V  + + Q+++++V G+
Sbjct: 236 PAGCIAVLNADSDDFHFFATICDERGQRVLSYGLAGAELRVTGVEPLAHGQRLSLTVLGR 295

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     PL G FQ +N L A GL I  G D+   L  L  L  VPGR + V T+  G  +
Sbjct: 296 DVTVDLPLAGRFQAWNVLCALGLVIGSGGDATRALATLPALEGVPGRLQHVATHPNGATV 355

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVD+AHT ++LE +L  +R+  +  ++ VFGCGGDRD+ KRP+MG +A  LAD AIVTDD
Sbjct: 356 YVDFAHTPDALETVLLALRSHAARDLVTVFGCGGDRDRTKRPVMGALAARLADRAIVTDD 415

Query: 419 NPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           NPR+EDP  +R+E++ G          E G+R EAIRTA+  L   DVLV+AGKGHE   
Sbjct: 416 NPRTEDPAFVRSEVLAGATGELAGRLEEIGDRAEAIRTAVRRLQPGDVLVIAGKGHEQGQ 475

Query: 474 IVTNGEKKMSVDCDIIREI 492
            +   E +   D D  R+ 
Sbjct: 476 TIGT-EVRPFDDADEARKA 493


>gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
 gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
          Length = 495

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 155/493 (31%), Positives = 231/493 (46%), Gaps = 10/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ + +   E  + E++ DSR   AG +FVA+ G++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWGVDTPELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +     + +       P++ +D+    LS  A   Y        ++ VTGT+GK++ 
Sbjct: 64  IAEAKGKTDNGTIQAMHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G  S  +G            +  TT S + +   L  L +Q  T  ++E
Sbjct: 124 TQLLAQWSQGLGEISAVMGTVGNGLLGMIVPSENTTGSAVDIQLDLQQLVNQKATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-- 246
            SSHGL Q R+  +   A  FTNL RDH+DYH   + Y  AK  LF     K+       
Sbjct: 184 VSSHGLVQGRVAALPFQAAVFTNLSRDHLDYHGDMENYEEAKWLLFSSHDVKQKIINADD 243

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                +   + +         L   + G+++    +        +T +          PL
Sbjct: 244 DVGQKWLTRLPETVAVTMENRLPKNWSGRWLSTSDIHYHDKGASITFTSSWGQGTLNSPL 303

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L+A    +++      +LE    L  V GR E      R   + VDYAHT 
Sbjct: 304 MGAFNVSNLLLALATLLSLEYPLQKLLEAASCLEPVCGRMEVFAARDRP-TVVVDYAHTP 362

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L   R    G++  VFGCGGDRD+GKR +MG IA   AD  IVTDDNPRSE+P 
Sbjct: 363 DALEKALSAARLHCKGQLWCVFGCGGDRDKGKRSLMGGIAEQGADRVIVTDDNPRSEEPH 422

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ G       +    R+EA+ +AI    ++DV++VAGKGHE   +V N      
Sbjct: 423 SIVEDILTGFIDPGRAMAIHGRVEAVTSAIMQAAEEDVVLVAGKGHEDYQLVGNRRLDY- 481

Query: 484 VDCDIIREILGLI 496
            D   +  +LG+I
Sbjct: 482 SDRLTVARLLGVI 494


>gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 491

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 143/502 (28%), Positives = 229/502 (45%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL          L++ L  FP+      +I  + +DSR ++ G +FV + G   D H F
Sbjct: 1   MKLH--------TLVSCLHDFPVVSKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
                         +   +       I  + P+++V NT + L++ A   YG+    +  
Sbjct: 53  ---------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + 
Sbjct: 104 IGITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAK 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233
           +   GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK      
Sbjct: 164 MVEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQ 223

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                          ++  +  V      A   V         +  K +         T+
Sbjct: 224 LGNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   +     D ++ +E +
Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483


>gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
 gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
          Length = 480

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 197/495 (39%), Positives = 272/495 (54%), Gaps = 16/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  LI     +     S+      +  ++  + D+R +  G +F A  G + +G  FI
Sbjct: 1   MRLGSLIEGLDAKPDAGASL------DVPVSGFAIDNRKVAPGTVFGAFQGARVNGEDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+  GA A+V                    +  DN R+  +  A+R +   PE  +AV
Sbjct: 55  PAAVQAGATAVVA--------RPEARVEGAIHIASDNPRRLFAQLAARYFAPFPEVTVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ +  G  S  IG    T S       LTTP  +     +S L  
Sbjct: 107 TGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKR 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH    +YF AKMRLF+E++ 
Sbjct: 167 EGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDEVVA 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+++ADD +S +V++RA   G RVLSVG QG+ + L         Q + I VEGK+
Sbjct: 227 PQGAAVVWADDEWSDKVIQRATKRGLRVLSVGVQGQALRLANRTPTQLGQTLDIEVEGKN 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G +Q  NAL AAGL IA G D+  VLE L ++  V GR E       G  +Y
Sbjct: 287 YKVNLPLIGAYQAANALTAAGLAIAGGEDAGKVLELLGRVQPVRGRLERAVITKAGAPVY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L   ++ +R  T GR+I +FG GGDRD GKRP MGK+A DLAD  IVTDDN
Sbjct: 347 VDYAHTPDGLRAAIEALRPHTRGRLIALFGAGGDRDAGKRPQMGKVAADLADHVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRA ++ G PG  E G R  AI  AI      D++++AGKGHE   I+ +  
Sbjct: 407 PRSEEPSAIRAAVMAGAPGAEEIGGRRAAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-R 465

Query: 480 KKMSVDCDIIREILG 494
                D  + RE  G
Sbjct: 466 VLPFDDVTVARECAG 480


>gi|152968670|ref|YP_001333779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150953519|gb|ABR75549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 495

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +G +F+A+ G++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------NAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AI+  +    +D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  +  G +S  +G               TT S + +   LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 GQGATFGAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +   
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +    L G F V N L+A    +A+G   A +L+   +L  V GR E   +   
Sbjct: 292 SSWGKGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKSAARLQPVCGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPAVVVDYAHTPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG +
Sbjct: 471 YQIVGNRRLDY-SDRVTVARLLGAV 494


>gi|238893065|ref|YP_002917799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238545381|dbj|BAH61732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 495

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +G +F+A+ G++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------NAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AI+  +    +D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  +  G +S  +G               TT S + +   LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 GQGATFGAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +   
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +    L G F V N L+A    +A+G   A +L+   +L  V GR E   +   
Sbjct: 292 SSWGKGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPAVVVDYAHTPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG +
Sbjct: 471 YQIVGNRRLDY-SDRVTVARLLGAV 494


>gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
 gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
          Length = 491

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 144/502 (28%), Positives = 230/502 (45%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             QGV    +E SSH L+  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEQGVDSTVMEVSSHALNLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D    E   R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    ++  ++ L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E     D ++ +E +
Sbjct: 463 YQIIG-KEVHHFDDREVAKEAI 483


>gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
 gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
          Length = 486

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 246/504 (48%), Gaps = 33/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK LQD++Y    E I   +  P       +  V  DSR+++  +++VA  G + DGH F
Sbjct: 1   MKTLQDILYGVSIEAIVGATTIP-------VKGVVFDSRNVKIDFVYVAQKGVQVDGHDF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  AI+ GA+ IV           A   +    + V+N+ K L + AS  Y      +  
Sbjct: 54  ISHAISNGAKVIVCE------FIPAECVAGVAYVKVENSSKTLGVLASNFYDNPSRKLTL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++AS +  +    G +   +        +   +N  TTP  I + K L  
Sbjct: 108 VGVTGTNGKTTIASLLYALFSSEGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHA 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GVTH  +E SSHG+ Q+R++G+    G F+NL  DH+DYH   + Y +   + F +
Sbjct: 168 MVESGVTHCFMEVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRD-IKKQFFD 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD     +++             +      + +              +
Sbjct: 227 SLPKTAFALTNVDDKNGTYMLQNTVAKKYTYAIKQHADFKAQILECQFSGMLL------K 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +  +    L G F   N L    +   + + S  +L+ + +L  V GRF+ +       
Sbjct: 281 IQSQEVWTSLIGAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGRFQTL-QTPNKV 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            + VDYAHT ++LE +L+ I TI +     I V GCGG+RDQ KRP+M K A++ +D  I
Sbjct: 340 TVVVDYAHTPDALENVLQTIATIRTRNETLITVIGCGGNRDQEKRPLMAKAAVNFSDKVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+EDP  I ++++ G+P       ++   R EAI  A ++  + D++++AGKGH
Sbjct: 400 FTSDNPRNEDPAVIISDMMKGVPAEHYKKTLKVTLREEAIAMAGQLAKEGDIVLIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NGE+    D DI +EI 
Sbjct: 460 ETYQEI-NGERFPFSDMDIAKEIF 482


>gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
 gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
          Length = 491

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 146/503 (29%), Positives = 234/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    V++ ++KL  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATKYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSE+P  I  +++ G     +    +R EAI  AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEEPGTILDDMVQGANGNNYEVIIDRKEAIYHAISNAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
 gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
          Length = 490

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 156/500 (31%), Positives = 225/500 (45%), Gaps = 23/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ L+              P       ++ +  DSR +  G  F+A+ G   DG  F+
Sbjct: 2   MTLQQLLPNT---------TLPATAAGVVLSGLQLDSRKVMPGDAFLAVQGVASDGRQFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAIA GA A++  +      FS       P +      + +   A+R YG+     N++
Sbjct: 53  SQAIAAGAVAVLAEAET----FSVQQEQAVPRVNFPGLSRSVGELAARWYGEPGSAMNVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+  F++      G     +G          Q    TTP PI L   L+ +
Sbjct: 109 GVTGTNGKTSITWFLRDALNALGHRCALVGTLGLGLKDNEQITGHTTPDPITLQAGLARV 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V++E SSH LDQHRL    +    F+NL RDH+DYH   +AY  AK  LF   
Sbjct: 169 LEAGADTVAMEVSSHALDQHRLGPTPVSVAVFSNLSRDHLDYHGDMEAYLAAKSVLFTR- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+I  DD  +  ++    +    V      G  +    V          ++V G
Sbjct: 228 -DGVKLAVINCDDPVAYSLVGCLADGVRCVTFGDQTGATVRCASVAFTAEGTNAELNVGG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + F    PL G F + N +  AG+    G+ +  +   L  +  VPGR E V        
Sbjct: 287 ESFSVTLPLFGRFNLSNLMAVAGILHGQGVSTDSLAGALAAITPVPGRMEPVQQAGCPT- 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE  L+  R   +GR+  + GCGGDRD GKRP M  +A   AD  + T 
Sbjct: 346 VIVDYAHTPDGLEKALQACRAHFAGRLFCIIGCGGDRDTGKRPQMAAVAERGADHVVFTS 405

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSEDP+KI  E+  G+           R  A+   ++  +  DV+++AGKGHE    
Sbjct: 406 DNPRSEDPQKIIDEMCAGLTDTGSVQIIVERDRAVMDTVQAASDGDVILLAGKGHEDYQE 465

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V NG +  S D D+  +   
Sbjct: 466 V-NGVRYPSDDRDLAHKAFN 484


>gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
 gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
          Length = 477

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 146/504 (28%), Positives = 230/504 (45%), Gaps = 35/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLF 59
           MKL +LI            +      + +I  ++SD+R  +  G IFV I G   DGH  
Sbjct: 1   MKLYELIK----------DVAETSLPDMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDA 50

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
             Q + +G  A+V      L+            ++V +TR    +  S  +G     +  
Sbjct: 51  AQQMLDKGCAAVVCERDLGLER----------QIIVTDTRAAFPMLCSAWFGHPERELEL 100

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+++ + ++++    G     IG   + I         TTP P  L +    
Sbjct: 101 IGVTGTNGKTTITTVIKKVLSGFGFKVGLIGTCQNEIGDKIIPTARTTPEPYDLFELFRK 160

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SS GL+Q R+ G    AG FTNL +DH+D H T + Y+ AK  LF+ 
Sbjct: 161 MADEGCKYTVMEVSSQGLEQKRVQGCHFKAGIFTNLTQDHLDVHGTMENYYQAKKMLFDI 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  AII  DD Y +  +             G        + V       +      
Sbjct: 221 ----CDTAIINTDDEYGRRYVTEIPCPYKTYSVNGKADF--RAEDVMLGTTGVKYVFCDG 274

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +  F +PG F V N+L        +G      ++  EK+  V GR E + T     
Sbjct: 275 KVKKNVSFNMPGLFNVSNSLAVIACMEVLGFTPCNTIKEFEKIQGVRGRAEIIPTGR-DF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DYAHT ++L  +L  I+  + G++  +FGCGG+RD+ KR  M   A + AD  IVT
Sbjct: 334 TVICDYAHTPDALINVLSAIKEGSKGKVKCLFGCGGNRDRTKRAPMAAAAAEHADFLIVT 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR EDP+ I  +++ G+ G    ++   +R EAI  AI+   K D++V+AGKGHE  
Sbjct: 394 SDNPRDEDPDDIINDVLKGLEGKDTPYVRMTDRREAIHWAIKNAEKDDIIVLAGKGHEDY 453

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+  G K    + +++ + L  I
Sbjct: 454 QILAGGVKIHFDEREVVADALKEI 477


>gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS185]
 gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS185]
          Length = 499

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 230/506 (45%), Gaps = 27/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+         Q             N+++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWLHYAGAQS-----------FNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYG--KHPE 115
            +A+  GA A++V +  + Q        N      + V    + +S  A++ Y       
Sbjct: 51  EKALDLGAAAVLVHTDDADQHGKVLHSDNVEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110

Query: 116 NI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170
                 + +TGT+GK+S +  + Q+    G  +  +G           D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTTDAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             LF           +  A  A     +K            G+Q    + K         
Sbjct: 231 QSLFRFSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGV 290

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             T+     +     PL G F + N L A       G D   + E ++ L  V GR E  
Sbjct: 291 SATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MGK A   
Sbjct: 351 TTAN-NITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQY 409

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++AG
Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTLSQQALTQVDRIAAIKEVVALAKPGDVILLAG 469

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KGHET      G +    +  + R++
Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494


>gi|331645195|ref|ZP_08346306.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
 gi|281177305|dbj|BAI53635.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE15]
 gi|330909932|gb|EGH38442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli AA86]
 gi|331045952|gb|EGI18071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
          Length = 495

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 170/505 (33%), Positives = 250/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATICFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum SS9]
 gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Photobacterium profundum SS9]
          Length = 506

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 151/489 (30%), Positives = 232/489 (47%), Gaps = 15/489 (3%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S +  +WRE  +  ++ DSR I+A  +FVA+ G+  DG  FIP AI  GA A++  +   
Sbjct: 21  SDWQEKWREHSVVNMTIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNI 80

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            +      +    I+      ++LS  A+R Y +      +LAVTGT+GK++++  + Q 
Sbjct: 81  AKHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW 140

Query: 137 CQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G ++  +G T      +      TT + I +   L  L  QG    ++E SSHGL 
Sbjct: 141 ANLIGYNAGVMGTTGNGLLNSLTPAVNTTGNAIEIPHVLHDLVDQGADFAAMEISSHGLV 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++ +A  FTNL RDH+DYH     Y +AK  LF E           ADD     
Sbjct: 201 QGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTEHQAGIPVIN--ADDDIGFT 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +    +A   V      G+        L  V        ++         F  PL G F
Sbjct: 259 WLADLPHAVAVVTDKARLGEHYQGQALWLTDVMYSTQGVNISFDSSWGAGQFTAPLVGSF 318

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L+A    +A+G     ++     L  V GR E    +     + VDYAHT ++LE
Sbjct: 319 NVSNLLLALATLLALGHSIDKLIATAPHLTAVIGRMEVF-QSPDKPMVVVDYAHTPDALE 377

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+ +R    G++  +FGCGGDRD GKRP+M +I+  LAD  I+TDDNPR+E P  I +
Sbjct: 378 KALQALRVHCQGKLWCIFGCGGDRDTGKRPMMAEISERLADRIIITDDNPRTEAPAAIVS 437

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +++ G+          +R  A   AIE     D++++AGKGHE   ++ +       D +
Sbjct: 438 DMLQGLALPQQAQVIHDRKLACTYAIEHAQVNDIILLAGKGHEDYQVLADRTIHY-SDRE 496

Query: 488 IIREILGLI 496
            ++ + G I
Sbjct: 497 TVQALFGEI 505


>gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia montanensis]
          Length = 479

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 159/484 (32%), Positives = 253/484 (52%), Gaps = 23/484 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
                  +++ K+  +S +S+ ++   +F AI G   DG+ FI  A+++GA  ++  +  
Sbjct: 2   SHNLKQLFQQHKVKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVLVITDNKK 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++            ++ V + +  L       Y K P+N++AVTGT+GKSSV S++ Q  
Sbjct: 62  NIVIDK--------VIYVKDVQAALHEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTH 113

Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              G  +  IG          +       LTT   +   K    L+  G+ ++  EASSH
Sbjct: 114 SLLGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFEASSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L     AI+ +D   
Sbjct: 174 GLDQARLREIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEE 233

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V    HN   + ++VG +G    + ++      Q +  +   ++++F  P+ G FQ 
Sbjct: 234 IEFVKDYLHNHNIKFITVGKKGDLE-ITRINCSLKGQNINFTFNNREYNFNTPIIGSFQA 292

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L+A       G     V++ L ++  V GR E +        I+VDYAHT ++LE  
Sbjct: 293 SNLLIAVLSMHYTGFAFDDVIDSLVEVKAVKGRMERI----DNTNIFVDYAHTPDALEKA 348

Query: 373 LKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           L  ++ I     ++ VVFGCGG+RD+ KR +MG++A   AD  I+TDDNPR+EDP+ IRA
Sbjct: 349 LTELKNIKLHDSKLSVVFGCGGNRDKAKRSLMGQMAAKRADTIIITDDNPRNEDPKLIRA 408

Query: 431 EIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           EII GI    + E  NR EAI+  I  L + D+L+VAGKGHE   I+ + +K    D ++
Sbjct: 409 EIISGIEKADYTEIANREEAIKYGINNLKQDDILLVAGKGHENYQIIGD-KKLPFDDAEV 467

Query: 489 IREI 492
           +R+ 
Sbjct: 468 VRKC 471


>gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
 gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
          Length = 491

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 234/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
 gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
          Length = 496

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 259/503 (51%), Gaps = 26/503 (5%)

Query: 9   KDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K+  E++  L I  +Q   + +I  ++ DSR+++  ++FV I G  +DGH +I +AI  G
Sbjct: 2   KNLNEVVTDLKIGVLQGDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDSG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++V            + S   ++  D+TR  L+  ++  Y        ++ VTGT+G
Sbjct: 62  ATALLVEKEVE-------VDSEVTVIKTDDTRLGLAEVSAAFYDYPSRELKVVGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +++G     IG   + +S    D++ TTP  + + K L+ +  +GVTH
Sbjct: 115 KTTNTYLIESILKKAGYKLGLIGTIKNKVSDQTFDSQRTTPEALDINKLLAQMIDKGVTH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP- 243
           V +E SSH LD +R+  I      FTN+ +DH+D+H +   Y  AK +LF  L       
Sbjct: 175 VVMEVSSHALDLNRVAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEKT 234

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AII  DD +S E ++ A++                 K +       +  +     + +  
Sbjct: 235 AIINIDDPHSDEFLEAANSKVLTYGIEKDANL--KAKDITISPTGVEFGLESTIGEMELD 292

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G F VYN L A G  +++G+D   +   LE++  + GRFE +   ++   + VDYA
Sbjct: 293 LNITGLFNVYNTLSAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEII-EEAQDFGVIVDYA 351

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT +SL  IL+       GRIIVVFGCGGDRD+ KRPIMG++A++L D A+VT DNPRSE
Sbjct: 352 HTPDSLRNILETAHDFVEGRIIVVFGCGGDRDKDKRPIMGQVAVELGDFAVVTSDNPRSE 411

Query: 424 DPEKIRAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +P +I A+I  GI            +I   +R EAI   IE     D++ + GKGHET  
Sbjct: 412 EPAEIIADIEVGIKEKDKIKGEDCDYIIIEDRAEAINYGIESAQPDDLVFIVGKGHETYQ 471

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
              + +     D ++ R  L  I
Sbjct: 472 TFKD-KTIPFDDREVARRSLAKI 493


>gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
 gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
          Length = 486

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 143/497 (28%), Positives = 233/497 (46%), Gaps = 28/497 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L+     + +              I  ++ DSR I+A   F+ I G   DGH F 
Sbjct: 1   MNSKELLASIPYKQVKGPLPEH-------IEHLTIDSRDIKANSAFICIKGYTVDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA  QGA  I+     ++         N  ++ V++T + L L A++ Y    +  +++
Sbjct: 54  QQAANQGATLIITEKPMTI--------DNATVVEVESTSRTLGLLAAKFYDYPSKLLHMI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SVA  +  +    G  S   G      +     +  TT   +   + ++  
Sbjct: 106 GVTGTNGKTSVAGILHSMLMELGEKSALTGTIGFNLNGQLHPSANTTNDVLTTQQMIARA 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
             +  +H+++E SSHGL   RL G++     FTNL  DH+D+H T + Y +AK       
Sbjct: 166 RDEDCSHMTMEVSSHGLVLGRLAGVEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQL 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + L  +  AI+ ADD +SKE+ K   +                 K +  +H     T++
Sbjct: 226 GQDLANQKQAILNADDPWSKELAKMTPHPVYTYGIQN--DAQFQAKNIQLMHTGTSFTLT 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +F     L GEF V NAL +     A G     +L+ L K+  V GR + V   + 
Sbjct: 284 CVEGEFPVTMKLLGEFNVSNALASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEA- 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I++DYAHT +++E  +  ++     RII + G GG+RD+ KRPIM   A  +AD  +
Sbjct: 343 PISIFIDYAHTPDAIEKAIDAVQDFKKSRIIFLVGTGGNRDKTKRPIMAAKAS-IADYVV 401

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +T D+PR E  + I  ++  G+    F   G+R +A+  A+E     D++++AGKGHE  
Sbjct: 402 LTTDDPRDEAYDSILGDLEVGMTHSNFACIGDRAKAVEHAVEQAEAGDIIILAGKGHEDY 461

Query: 473 HIVTNGEKKMSVDCDII 489
            I+ N  K    D +I 
Sbjct: 462 QIIGN-TKYPHSDKEIA 477


>gi|82542689|ref|YP_406636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii Sb227]
 gi|81244100|gb|ABB64808.1| meso-diaminopimelate-adding enzyme [Shigella boydii Sb227]
 gi|320183628|gb|EFW58471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella flexneri CDC 796-83]
          Length = 495

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++ +  V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E      +
Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTVPGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 352 PT-VVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|82775492|ref|YP_401839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae Sd197]
 gi|309787239|ref|ZP_07681851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81239640|gb|ABB60350.1| meso-diaminopimelate-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924817|gb|EFP70312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 495

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALTTLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
          Length = 484

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 163/502 (32%), Positives = 249/502 (49%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+          +S       E +I  +++DSR    G +FV I G + DGH F 
Sbjct: 1   MKLQNLLRD--------VSYTGGALPEFEITGITADSRKAGPGVVFVCIPGERADGHDFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A A G+ A++                  P ++V +TR   +L  +  +G+  E   ++
Sbjct: 53  ASAAAAGSPAVLALRDTGAP---------VPHILVKDTRLAYALCCANFFGRPAERLRMV 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++  + +++I + +G  S  IG   +        + LTTP P    + L  +
Sbjct: 104 GVTGTNGKTTTTTLLKEILEYNGHKSGLIGTIVNMAGGKTLPSHLTTPEPYEFQQLLKTI 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G     +E SSH L Q R+ G    A  FTNL +DH+D+H+T + Y  AK +     
Sbjct: 164 ADEGCEFAVMEVSSHALAQERVAGCHFEAAVFTNLTQDHLDFHKTMENYLEAKEK----- 218

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L       I   D      + R         S  Y       + +   ++  +  +    
Sbjct: 219 LFSMCDLGIVNVDDDYAPEIIRTAKCKTVTYSARYMNADYTARNIKLKNDGVEYEMVGNA 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+PG F VYN L AA   +++GI    VLE L ++  V GR E V T      
Sbjct: 279 LIGRVSVPIPGAFSVYNTLAAAAAAVSLGIPFKQVLEALHQVKGVKGRIEVVPTGR-NFT 337

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT ++LE ILK+IR    GR++ +FGCGGDRD+ KRPIMG +A   AD  IVT 
Sbjct: 338 VIIDYAHTPDALEKILKSIRGFAKGRVVALFGCGGDRDKTKRPIMGMVAGRGADFCIVTS 397

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP+ I  +I+ G+ G   ++   NR EAI  A++   K D++++AGKGHE   I
Sbjct: 398 DNPRTEDPQAIIDDILPGMDGPAPYVVVPNRREAIAYALKNAQKDDIVLLAGKGHEDYQI 457

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           +   EK    + +++ EIL  +
Sbjct: 458 IGR-EKHHFDEREVVAEILRCL 478


>gi|288937143|ref|YP_003441202.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|290512566|ref|ZP_06551932.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
 gi|288891852|gb|ADC60170.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|289774907|gb|EFD82909.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
          Length = 495

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 247/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +G +F+A+ G++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------NAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AI+  +    +D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  +  G +S  +G               TT S + +   LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 GQGATFGAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +   
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G   A +L+   +L  V GR E   +   
Sbjct: 292 SSWGNGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPAVVVDYAHTPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG +
Sbjct: 471 YQIVGNRRLDY-SDRVTVARLLGAV 494


>gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
 gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
          Length = 495

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 150/493 (30%), Positives = 231/493 (46%), Gaps = 10/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P L + L    +Q     + +++ DSR   +G +FVAI G++ DG  +IPQAIAQG  A+
Sbjct: 4   PNLSDLLGALGIQAPSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGVCAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +  +               P++ ++N    LS  A   Y +      ++ VTGT+GK++ 
Sbjct: 64  LAEAEGIATHGEIRESHGIPVIYIENLNCQLSKLAGIFYHQPANKLKLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G  S  +G               TT S + +   L  L +QG T  ++E
Sbjct: 124 TQLLAQWAQGLGEVSAVMGTVGNGLLDHIVPAMNTTGSAVDIQLELQQLVNQGATFTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY- 247
            SSHGL Q R+  +  +A  FTNL RDH+DYH     Y  AK  LF      E       
Sbjct: 184 VSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEQAKWLLFSTHHSGEKIINADD 243

Query: 248 -ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                +   +           L   +QG+++   ++        +  +    + +   PL
Sbjct: 244 AVGHKWLTHLPDAVAVTMADKLPANWQGRYVQATQINYHDAGATIHFNSSWGEGEIESPL 303

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L A    +A+      V++    L  V GR E    ++R   + VDYAHT 
Sbjct: 304 MGAFNVSNLLCALATLLALEYPLDAVIKASSALTPVCGRMEVFSADNRP-TVIVDYAHTP 362

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+  R   +G++  +FGCGGDRD+GKRP+MG +A   AD  ++TDDNPRSE+P+
Sbjct: 363 DALEKALQAARLHCTGKLWCIFGCGGDRDKGKRPLMGAVAEQFADKVVITDDNPRSEEPQ 422

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ G+      +    R EA+   +   +  D+++VAGKGHE   IV        
Sbjct: 423 AIIQDILSGLMDPGRALAIEGRAEAVTNVVMQASPADMILVAGKGHEDYQIVGTRRLDY- 481

Query: 484 VDCDIIREILGLI 496
            D   +  +LG+I
Sbjct: 482 SDRLTVARLLGVI 494


>gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
 gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
          Length = 493

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 147/502 (29%), Positives = 234/502 (46%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   +             +R+I+ +  DSR ++   IFV I G   DGH F+
Sbjct: 1   MKLTKLLERLTYQ-------CKEGTVDREISTLCYDSRKVEKDSIFVCITGVVSDGHSFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            + IA+G+  IV     S+ D          +L+V NTR+ L+  ++  +    E    +
Sbjct: 54  NEVIAKGSTVIVAEKEVSVPD-------GVTLLLVSNTREALAYLSAAYFDYPAEKLKTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V  I   +G+ +  IG   T+          TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYMVHSILSEAGIKTGLIGTIETMIGDTVIPANNTTPESYLVQQYFAKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G T V +E SS GL  HR+ G     G FTN+  DHI      +     +    + L
Sbjct: 167 VEDGCTCVVMEVSSQGLMLHRVSGFTFDIGVFTNMEPDHIGP---GEHGSFEEYMACKGL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K+    I   D    E +   H        +  +        +        + +  + 
Sbjct: 224 LFKQCKVGIANVDDKHMEQVLSGHTCTLETYGLSEKADL-RAVDIDLHSKLGNLMVLYKV 282

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           K   DF     +PG+F VYN+L A  +C    I +  + E L K+ V  GR E V   S+
Sbjct: 283 KGLCDFPVQVNIPGKFTVYNSLTAIAICRHFNISTERIKEVLTKVKV-KGRVEPV-EVSK 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAH + SL+ +L  +R     R++ +FGCGG+R + +R  MG+I+ +LAD  I
Sbjct: 341 KFTMMIDYAHNAMSLQSVLSTLREYEPKRLVCLFGCGGNRSKDRRFEMGEISSNLADYTI 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNPR E+P+ I  +I+ G+      +I   +R EAIR +I    + D++++AGKGHE
Sbjct: 401 VTSDNPRFEEPQDILNDIVVGVKRGKGDYIAILDRKEAIRHSILTAKEGDIILIAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               +  G K    D ++I+EI
Sbjct: 461 NYQEI-RGVKHHMDDRELIQEI 481


>gi|193065884|ref|ZP_03046945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|193070831|ref|ZP_03051764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194429350|ref|ZP_03061875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|256020077|ref|ZP_05433942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sp. D9]
 gi|260842321|ref|YP_003220099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|260866238|ref|YP_003232640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|307311464|ref|ZP_07591106.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|332281227|ref|ZP_08393640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
 gi|192926471|gb|EDV81104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|192955861|gb|EDV86331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194412570|gb|EDX28867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|257757468|dbj|BAI28965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|257762594|dbj|BAI34089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|306908443|gb|EFN38941.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|315059308|gb|ADT73635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|320200396|gb|EFW74982.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli EC4100B]
 gi|323176393|gb|EFZ61985.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323380134|gb|ADX52402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli KO11]
 gi|332103579|gb|EGJ06925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
          Length = 495

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 491

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 141/502 (28%), Positives = 232/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     D + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +  +D        R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVM-AKDIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSE+P  I  +++HG     +    +R EAI  AI     +D++++AGKGHET
Sbjct: 403 IYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   +     D ++ +E +
Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483


>gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 491

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 229/501 (45%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                         ++  +  V      A   V         +  K +         T+ 
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    +
Sbjct: 285 TPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  AI
Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHET 
Sbjct: 404 YTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   +     D ++ +E +
Sbjct: 464 QIIG-KDXHHFDDREVAKEAI 483


>gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
 gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 158/474 (33%), Positives = 230/474 (48%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +     D S       P+
Sbjct: 1   MTLDSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAEGVAPDASMVEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + + N  + LS  A + Y +  +   ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLRNLNQHLSTLAGQFYHQPGDALRLVGVTGTNGKTTTTQLLAQWSQALGDTSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L  L  QG T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH    +Y  AK  LF     +       ADD   +  + +   A    + 
Sbjct: 181 TNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--ADDEVGRRWLSQLPQAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G++G ++    V    N   +              L G F V N LVA    +++
Sbjct: 239 GNVPTGWKGPWLFASDVQYHDNGASIAFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L     L  V GR E          + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARLHCKGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADILSGLLDAGHAQAI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    + DV+++AGKGHE   +V N       D   +  +L ++
Sbjct: 418 HGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLEVV 470


>gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
 gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
          Length = 491

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 143/501 (28%), Positives = 235/501 (46%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLLS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                          S + +   +        V         I  + +         T+ 
Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    +
Sbjct: 285 TPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A  AI
Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGNVYCIVGCGGDRDRTKRPIMASVAAEYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP+ I  ++++G     +    +R EAI  AI      D++++AGKGHET 
Sbjct: 404 YTSDNPRSEDPKAILDDMVNGANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   +     D ++ +E +
Sbjct: 464 QIIG-KKVHHFDDREVAKEAI 483


>gi|191167747|ref|ZP_03029554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
 gi|190902173|gb|EDV61915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
          Length = 495

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 491

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 232/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +  +D        R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVM-AKDIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSE+P  I  +++HG     +    +R EAI  AI     +D++++AGKGHET
Sbjct: 403 IYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   +     D ++ +E +
Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483


>gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 487

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 241/499 (48%), Gaps = 26/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ+L+     E I       +   +  I ++  DSR +    +F+ I G K  G L+I
Sbjct: 1   MYLQELLKGIQVEKI-------IGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI +GA AI+     +++         T  + V+N+RK L+  ASR Y        ++
Sbjct: 54  NEAIQRGAVAILSEKEIAIE--------GTTTIKVENSRKALAAVASRFYKFPTNTLKLV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+   V+ I     ++   IG  S    +   +   TTP  + L K L+ +
Sbjct: 106 GVTGTNGKTSITYMVKSILGYYNINVGLIGTISNWIGNKEIEAVRTTPESLELQKILNEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q V    +E SSH L+  R+D  K   G FTNL  +H+D+H+    Y NAK +LF + 
Sbjct: 166 VEQKVDTCVMEVSSHALELGRVDHTKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLFYKT 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +         E +K                 +    K+       Q+ +  + 
Sbjct: 226 TLCNIINVDDIHGKMIAEELKEEQIPLITFGMNQQADVYATDLKINLKGVSFQLHMGQDS 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+F    P    F VYNA+ +  +C  +G+    +   LE +  VPGRFE V    R   
Sbjct: 286 KEFHVKIPGL--FTVYNAMPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRNS- 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT ++LE IL + R     RII VFGCGGDRD+ KR IMG+I+   +D +I+T 
Sbjct: 343 VIIDYAHTPDALENILISTRKFAPKRIITVFGCGGDRDKTKRRIMGEISGKYSDYSIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+E+P KI   I  GI           +R  AI  A+++  ++D++++AGKGHE   
Sbjct: 403 DNPRTEEPLKIIEMIEDGIKQVTDQYKIMIDRRCAIEYAMKIAEEKDIIILAGKGHEKTQ 462

Query: 474 IVTNGEKKMSVDCDIIREI 492
           ++ N E     D ++  EI
Sbjct: 463 VIGN-EVFYFDDREVALEI 480


>gi|187732212|ref|YP_001878895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
 gi|187429204|gb|ACD08478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
          Length = 495

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++ +  V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
 gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
          Length = 476

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 148/476 (31%), Positives = 233/476 (48%), Gaps = 24/476 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I  +  DSR ++   +FVAI G+  +GH FI +AI QGA  I+             I 
Sbjct: 10  VAIKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGALVIICEK------LPNDIV 63

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +    + V N+++ L+  A+  Y    + +  + VTGT+GK+++A+ +  +  ++G    
Sbjct: 64  NGVTYVQVANSKEALAYMAANFYENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAGFKVG 123

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +     +      D   TTP  + +   L+ ++ +GV +  +E SSHG+DQHR  G+  
Sbjct: 124 LLSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHRTTGLVF 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FTNL  DH+DYH +   Y + K R F+E LP  + A+   DD   + +++      
Sbjct: 184 AGGIFTNLSHDHLDYHSSFAEYRDVKKRFFDE-LPASAFALTNVDDKNGEVMLQNTKAKQ 242

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  Y      + +           + ++  D +    L G F  YN L        
Sbjct: 243 YTYGLKNYADYKAQILENQFTG------LLLKINDQEVWSRLIGSFNAYNILAIYAAAEL 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+++   L+ + +LH V GRF++  +        VDYAHT ++L+ +L  I  I +   
Sbjct: 297 LGLETLENLKFISELHSVNGRFQYFISPEEKITAIVDYAHTPDALKNVLDTINAIRTKNE 356

Query: 385 --IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----- 437
             I V GCGGDRD+ KRP MG IA  L+   I T DNPR+ED + I  EI  G+      
Sbjct: 357 ELITVVGCGGDRDRTKRPKMGHIASALSSKVIFTSDNPRTEDADAIIEEIEKGVEPQNFN 416

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +   NR +AI+TA +M    D++++AGKGHET   V NG+K    D  I+ E L
Sbjct: 417 KTVSISNRKQAIKTACQMAQANDIILIAGKGHETYQEV-NGQKHDFDDYKIVSEFL 471


>gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
          Length = 487

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 143/500 (28%), Positives = 234/500 (46%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++L+     + IN          E +++ ++ DSR  + G +FV + G   DGH +I
Sbjct: 1   MQLKELVKDLNIKEINGS-------LEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI  G +A +V     + +           +  D+TR  L+  +   +G     +  +
Sbjct: 54  NDAIENGTKAFLVQKHVDVPE-------GITTIETDDTRFGLAAVSDAFFGHPSSKLNLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I + +G +   IG   + I +       TTP    L    + +
Sbjct: 107 GITGTKGKTTTTYMVKAILEAAGHNMGLIGTVANLIGNQVLYTSRTTPESYDLQSLFNDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V    +E SS GL+ HR+       G FTN  RDHI   +   A          +L
Sbjct: 167 IDNKVDSAVMEVSSQGLELHRVAKCDFDIGVFTNFSRDHIGPKE--HATLEEYFNAKAKL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               + A+I  D  + +++ + A               +     V          ++   
Sbjct: 225 FKMCNKAVINIDSEHGRKMAELAEGKVLTYGLSSRSDIW--ASDVIKKTGHTFFKLNSPW 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    L GEF +YNAL A G C  I   +   ++       VPGR E V T+     
Sbjct: 283 GSIDIETDLQGEFNIYNALAAIGSCCLIPGITLEHVKKGLTKVTVPGRMESVKTDG-NYS 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAHT +SLE +LK ++    GR++ +FGCGGDRD+GKRP MG+I+ ++AD  I+T 
Sbjct: 342 VLIDYAHTPDSLEQVLKTVKEFAHGRVVSLFGCGGDRDKGKRPAMGEISGNIADFTIITS 401

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+E+PE+I  +I  GI      +I+  +R +AI+ A+E     D++++AGKGHET  
Sbjct: 402 DNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAQDGDIIILAGKGHETYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
                +     + +++ E+L
Sbjct: 462 QFAE-KTIHFDEREVVNELL 480


>gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
 gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
          Length = 491

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 234/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSEDP  I  +++HG     +    +R EAI  AI      D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D ++ +E +
Sbjct: 462 TYQIIG-KDVHHFDDREVAKEAI 483


>gi|157147491|ref|YP_001454810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084696|gb|ABV14374.1| hypothetical protein CKO_03290 [Citrobacter koseri ATCC BAA-895]
          Length = 495

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 167/505 (33%), Positives = 248/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +G +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------GAPERALREMTLDSRVAASGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  E++  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEHMRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 EQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWTLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + R  +A        ++    G+++   +V    +   +   
Sbjct: 232 HHYGEAIVNADDEVGRRWLVRLPDAVAVSMEDHINPNCHGRWLKAVEVKYHDSGATIRFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G   A +L+   +L  V GR E   +   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAPRLQPVCGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +
Sbjct: 351 KTTVVVDYAHTPDALEKALQAARLHCTGQLWCVFGCGGDRDKGKRPLMGAIAEEFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAIMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|320197464|gb|EFW72078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli WV_060327]
          Length = 495

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFTASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
 gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
          Length = 471

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 240/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +    +D + T     P+
Sbjct: 1   MTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  E +  + VTGT+GK++    + Q  Q  G +   +G  
Sbjct: 61  IYLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETGAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  +G T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVCPTENTTGSAVDVQHVLNELVDRGATFAAMEVSSHGLVQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH     Y  AK  LF      +  AII ADD   +  + +  +A    + 
Sbjct: 181 TNLSRDHLDYHGDMANYEAAKWSLFAGHEVGQ--AIINADDEVGQRWLSKLPDAVAVTMQ 238

Query: 270 V----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G  G+++    V    N   V  S    D +    L G F V N L+A    +++
Sbjct: 239 DNLQLGCHGRWLKTTAVSYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     ++E   +L  V GR E          + VDYAHT ++LE  L+  R    G++ 
Sbjct: 299 GYPLDKLVETGNQLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALEAARLHCQGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPR+E+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLDAGRALVI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +AI    +QDV++VAGKGHE   +V N       D   +  +LG+I
Sbjct: 418 HGRAEAVTSAIMQAKEQDVVLVAGKGHEDYQLVGNRRLDY-SDRTTVARLLGVI 470


>gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 471

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 153/481 (31%), Positives = 236/481 (49%), Gaps = 25/481 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           + +E  ++ V SDSR I+AG++FVAIVG + DGH  I ++I  GA+ I+  +        
Sbjct: 6   EGKELSLSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIICQT------LP 59

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
            T+R +   + V ++ K L    S   G+  + +  + VTGT+GK++V + + ++ ++ G
Sbjct: 60  VTLRPDVTYICVKDSAKALGQIVSLWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRKLG 119

Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                I    + I+        TTP  I L   L  + S+G  +V +E SSH +DQ R+ 
Sbjct: 120 YKVGLISTICNCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAIDQKRIA 179

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++   G FTNL RDH+DYH+T   Y + K   F+  LP  + A+   DD     +++  
Sbjct: 180 GLQFKGGIFTNLTRDHLDYHKTFDIYRDVKKTFFDL-LPTGAFALANKDDKNGAFMLQNT 238

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                             + +         +            F        YN L   G
Sbjct: 239 KAHKKFYSLQSLADFKSRILESHFNGTLMTINDKELSTLLVGKFNA------YNLLAIYG 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
             I +G +S  +L  L  L  V GRFE +   SRG  + VDYAHT ++L  +L  I  I 
Sbjct: 293 TAILLGQNSDEILVLLSVLRPVIGRFETL-NASRGFTVIVDYAHTPDALINVLNTINEIL 351

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G+II V GCGG+RD+GKR IM + A+ L+   I+T DNPR E+P  I  +++ G+  
Sbjct: 352 ARKGKIITVIGCGGNRDKGKRSIMAREAVRLSQKVILTSDNPRFEEPGDIIEDMLAGLDD 411

Query: 439 F-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 I   +R EAIRTA  +    D++++AGKGHE    +  G K    D  ++ EI+
Sbjct: 412 IQQKETICIVDRKEAIRTACLLAQPNDIVLIAGKGHEDYQEIK-GVKNHFNDKKVVMEII 470

Query: 494 G 494
            
Sbjct: 471 N 471


>gi|331671604|ref|ZP_08372402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
 gi|331071449|gb|EGI42806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
          Length = 495

 Score =  311 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 170/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
 gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
          Length = 491

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 233/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +      +I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERSIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +A      +L
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +  +D        R+  A      +      +  K +         T+
Sbjct: 225 GNSYNHNREKYAVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVM-AKDIVMTSGGTTFTL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    
Sbjct: 284 VTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DGG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  A
Sbjct: 343 QNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATQYATHA 402

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           I T DNPRSE+P  I  +++HG     +    +R EAI  AI     +D++++AGKGHET
Sbjct: 403 IYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKGHET 462

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   +     D ++ +E +
Sbjct: 463 YQIIG-KDVHHFDDREVAKEAI 483


>gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
 gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
          Length = 491

 Score =  311 bits (795), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 147/502 (29%), Positives = 230/502 (45%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+   FP              E+   +++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 1   MLLRELLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117
            +A+AQGA A++V +    +     +      +      K +S  A+  Y     H   I
Sbjct: 50  DKALAQGATAVLVHTDNPQEQGKVIVAEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGI 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+S +    Q+       +  +G           D+  TT   I L + L  
Sbjct: 110 VGITGTNGKTSTSQLCAQLVTLLSGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +++GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  A  +    
Sbjct: 170 FANKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENY--AAAKQMLF 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293
                   ++  DD      +    N   ++     +       + K V       Q T+
Sbjct: 228 RFDSLRHGLLNLDDPIGGAWLAELKNVPAKIWGFSIEAHKAAAFYTKNVRFNDQGVQATL 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D   PL G F + N L A       G+D   +   +  L  V GR E   T  
Sbjct: 288 VWPEGEIDISSPLLGAFNLSNLLAALSALYLQGMDMRALAAKVPYLVPVAGRMERFTTAD 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  
Sbjct: 348 -NITLVVDYAHTPDAIEQALNALRRHCAGVLWCVFGCGGDRDKGKRPLMGQAAEQFADRI 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV+++AGKGHE
Sbjct: 407 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G +    +  + R++
Sbjct: 467 TYQE-AAGVRHDYDERALARQL 487


>gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 491

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSE+P  I  +++HG     +    +R EAI  AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEEPGAILDDMVHGANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D +I +E +
Sbjct: 462 TYQIIG-KDVHHFDDREIAKEAI 483


>gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
 gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
          Length = 551

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 147/478 (30%), Positives = 232/478 (48%), Gaps = 19/478 (3%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +   N+V+ DSR  +   +FVA  G    G  F+ +AI++GA  +V S         
Sbjct: 24  GAGDIYFNDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGAVGVVTSQ-------- 75

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                  P  VV N R   +  +  LYG       ++ VTGT+GK++V+   + +  +SG
Sbjct: 76  VLPNCPLPQCVVANPRAAYAYLSQSLYGHPASRLRMMGVTGTNGKTTVSWMTRALMAKSG 135

Query: 142 LSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  +G         A+ + LTTP    +A     + S+G TH+++E SSH LDQ R  
Sbjct: 136 YRTGLLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLAMELSSHSLDQSRAA 195

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + L     TN+  DH+DYH    +Y  AK R+ + + P  + A+ + +D  +  +    
Sbjct: 196 ALPLDCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIAL-HINDPGAASLASLV 254

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 +         +  + +    +     +  +G+       + G   + NAL A  
Sbjct: 255 PAECRLIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENALAALA 314

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A  +    + E LE+   VPGR E          I+VDYAHT ++L   L ++R +T
Sbjct: 315 AGLAWKVPFLSMAEALEEFRPVPGRMERCTWGE-PFDIFVDYAHTPDALSRALCSLRGLT 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
            GR+I VFG GGDRD  KRP++G+ A   AD+AIVT DNPRSE+PEKI  +I  G+P   
Sbjct: 374 RGRLICVFGAGGDRDATKRPLLGRAASQ-ADVAIVTSDNPRSENPEKIIQQICDGVPAQQ 432

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              + + +R  AI+ AIE     D++++AGKGHE+  I+         D  ++RE+L 
Sbjct: 433 VEVVIEVDRKLAIQHAIEQALPGDMILIAGKGHESEQIIGASH-LPFDDRRVVRELLE 489


>gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
 gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
          Length = 480

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 188/500 (37%), Positives = 274/500 (54%), Gaps = 29/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DLI  D                + +I  +++DSR ++ G++F A+ G   DG  +I
Sbjct: 1   MRLSDLIPLD-------------GHLDAEITGLTADSRQVKPGFLFAALPGETTDGRRYI 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA         +++  +         +  P+L  DN R+ L++ A+R +   P+ I+ V
Sbjct: 48  DQA---------IAAGAAAILAPTGTTATVPVLADDNPRQALAMLAARFHAGQPKCIVGV 98

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVA FV Q+    G S+  +G     +  +    R TTP P+ L + +S +++
Sbjct: 99  TGTNGKTSVARFVAQLWSAFGHSAGTVGTLGASAPGYDYALRHTTPDPVELHQVISTMAA 158

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+++E SSHGL QHR DG++     FTN+ +DH+DYH + +AYF AKMRL   LLP
Sbjct: 159 MGTTHLAMEVSSHGLAQHRADGVRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALLP 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   A+I  D A ++  ++ A  AG RVL+VG +G+ + L           +T+SVE   
Sbjct: 219 ETGQAVITTDGAGAEGAIEAAQGAGRRVLTVGRRGETLKLLSCVPHQGGLALTVSVEEGP 278

Query: 300 FDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              +   L G+FQ  NALVAAGL IA G +   V+E + KL   PGR +  G  S  G +
Sbjct: 279 AQSVALSLIGDFQADNALVAAGLVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGGM 338

Query: 359 ---YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +VDYAHT +++   L+ I+    G R++VV G GGDRD+ KRP+MG+ A   AD+ I
Sbjct: 339 ASAFVDYAHTPDAIATALRAIKPHVPGGRVVVVIGAGGDRDRTKRPLMGRAAAAGADLVI 398

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           VTDDNPRSEDP  IR+++  G PG    G R  AIR   E L   DVL+V GKGHE    
Sbjct: 399 VTDDNPRSEDPAAIRSQVAEGAPGAQIIGGREAAIRAGAEALKAGDVLLVTGKGHEQTQT 458

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + +       D       +G
Sbjct: 459 IGH-VTYPFDDVSTTLAAMG 477


>gi|260853298|ref|YP_003227189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
 gi|257751947|dbj|BAI23449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVTAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
 gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 148/493 (30%), Positives = 229/493 (46%), Gaps = 10/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   L+ F +      + E++ DSR   AG +F+A+ G++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +  +    ++    +    P++ + +    LS  A   Y +    +  + VTGT+GK++ 
Sbjct: 64  IAEAQGEAEEGEIRVVHGVPVIYLHDLNNRLSALAGEFYHQPSSKMKLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G            +  TT S + +   L+ L ++  T  ++E
Sbjct: 124 TQLIAQWAKGLGETSAVMGTVGNGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY- 247
            SSHGL Q R+  +   A  FTNL RDH+DYH   + Y  AK  LF     K        
Sbjct: 184 VSSHGLIQGRVAALNFDAAVFTNLSRDHLDYHGDMENYEAAKWLLFSTHQTKTQIINADD 243

Query: 248 -ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                +   + +         +   +QG ++    V        +  +    +  F  PL
Sbjct: 244 DVGLKWLHRLPQACAVTMENRIPKNWQGSWLKATNVDYHDKGATIHFASSWGEGSFESPL 303

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L+A    + +      +L   + L  V GR E   T  +   + VDYAHT 
Sbjct: 304 MGAFNVSNLLLAMATLLMMDYPLDKLLAATDFLMPVCGRMEVFSTEGKPT-VVVDYAHTP 362

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L   R    G++  VFGCGGDRD+GKRP+MG  A   AD  ++TDDNPRSE+P 
Sbjct: 363 DALEKALLAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNPRSEEPL 422

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ GI      +    R EA+ + I      DV++VAGKGHE   I+ +      
Sbjct: 423 DIINDIMAGILDSSRVLAIPGRPEAVTSTILQAQPDDVILVAGKGHEDYQIIGSRRLDY- 481

Query: 484 VDCDIIREILGLI 496
            D   +  +LG++
Sbjct: 482 SDRLTVARLLGVV 494


>gi|291280910|ref|YP_003497728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|209746600|gb|ACI71607.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|290760783|gb|ADD54744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320658210|gb|EFX25939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663519|gb|EFX30803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q  T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQDATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|323975751|gb|EGB70847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           TW10509]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|320172824|gb|EFW48056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella dysenteriae CDC 74-1112]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 254/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        +++   G+++ +  V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKVIDVNYHDSGVTIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|26246018|ref|NP_752057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227885010|ref|ZP_04002815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
 gi|30316044|sp|Q8FL67|MURE_ECOL6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|26106415|gb|AAN78601.1|AE016755_101 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227837839|gb|EEJ48305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 250/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|331661459|ref|ZP_08362383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
 gi|331061374|gb|EGI33337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 170/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 493

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 161/505 (31%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+       +NQ+          +I+ ++ DSR +  G +FVAI G+  DG  FI
Sbjct: 2   MQLSELLLPWCE--LNQV---------VEISSMTLDSRKVTTGCLFVAIKGHAVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
           P AI QGA A++  S    +  + +    TPI+ +D     LS  A R Y   +    ++
Sbjct: 51  PVAIKQGASAVLAQSDEVNKTGTISFLDQTPIIYLDALSIKLSAVAGRFYHAEQRKMQLV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  + Q     G  +  +G T     +  +    TT SPI + + L+ L
Sbjct: 111 GITGTNGKTTISQIIAQWATLLGKPAGVMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDL 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G    ++E SSHGL Q R++ +   A  FTNL RDH+DYH     Y  AK  LF   
Sbjct: 171 ENIGAKLTALEISSHGLVQGRVNALNFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSH 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTI 293
            PK S     ADD      +K   NA    L+ G         +    V    +  Q+++
Sbjct: 231 SPKYSIIN--ADDTVGASWLKELPNAVGVSLNEGNLSFHSGKKVFATSVIYSTDGIQISL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + +    D   PL G F   N LVA    +++G D   + +   KL  V GR E   ++ 
Sbjct: 289 NSDWGTADLSVPLIGAFNANNILVAFATLLSLGYDITELADAAPKLTAVIGRMELF-SSE 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              ++ VDYAHT ++L+  L+ +R    G++  +FGCGGDRD GKRP+M  IA   AD+ 
Sbjct: 348 GNAKVVVDYAHTPDALDKALQALRVHCEGKLWCIFGCGGDRDTGKRPMMASIAEQQADVI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I++DDNPRSEDP  I  +++ G+           R +A + A+   +K D++++AGKGHE
Sbjct: 408 ILSDDNPRSEDPSLITKDMLAGLNQPDIAHVIHQRFDACQFALSQASKHDIILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              ++         D +  +++LGL
Sbjct: 468 EYQVLATETIHY-SDRETAQKLLGL 491


>gi|91209149|ref|YP_539135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|117622371|ref|YP_851284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218557025|ref|YP_002389938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli S88]
 gi|237704234|ref|ZP_04534715.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|91070723|gb|ABE05604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|115511495|gb|ABI99569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218363794|emb|CAR01454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|226902146|gb|EEH88405.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|294490144|gb|ADE88900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IHE3034]
 gi|323955283|gb|EGB51056.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H263]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
 gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
          Length = 490

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 158/489 (32%), Positives = 238/489 (48%), Gaps = 14/489 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +     ER + E++ DSR   +  +FVAI G+  DG  FIPQAIAQG  A++  +
Sbjct: 3   DLLAPWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
               +D         P++ +    + LS  A R Y +  E +  + VTGT+GK++    +
Sbjct: 63  EGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +   +G               TT S + +   L+ L  +G +  ++E SSH
Sbjct: 123 AQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL QHR+  +   A +FTNL RDH+DYH     Y  AK  LF E    +  AII ADD  
Sbjct: 183 GLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYEAAKWLLFAEHQVGQ--AIINADDEV 240

Query: 253 SKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  +++  +A    +      G  G+++   KV       +V  S    + +    L G
Sbjct: 241 GRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N LVA    +++      +     +L  V GR E   +      + VDYAHT ++
Sbjct: 301 AFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVF-SAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R    GR+  +FGCGGDRD+GKRP+MG IA   AD+ ++TDDNPRSEDP  I
Sbjct: 360 LEKALAAARLHCKGRLWCLFGCGGDRDKGKRPLMGAIAEQFADVVVITDDNPRSEDPAAI 419

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+           R +A+   +    + D+++VAGKGHE   I+ +       D
Sbjct: 420 VRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKGHEDYQIIGHQRFDY-SD 478

Query: 486 CDIIREILG 494
            D +  +LG
Sbjct: 479 RDTVARLLG 487


>gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
 gi|167661927|gb|EDS06057.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
          Length = 504

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 140/503 (27%), Positives = 221/503 (43%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E+            E ++ ++ +DSR +  G +FV I G   DGH +I
Sbjct: 17  MKLTQLLERLEYEVRQGSD-------EVEVTQLINDSRKVTEGSVFVCISGAVSDGHKYI 69

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A+GA A++V                  ++ VD+TR  L+L ++  +G   E +  +
Sbjct: 70  DDVAAKGAAAVIVERPVDA-------PKGLTVIRVDDTRYALALMSAAYFGYPAEKLKVI 122

Query: 121 TGTSGKSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +         G       IG   + I   A     TTP    + +  + +
Sbjct: 123 GITGTKGKTTTTYMVKSILEGVGHKVGLIGTIEAIIGDKAIPANNTTPESYTIHQYFAQM 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G   V +E SS GL  HR  GI+   G FTNLG DHI      +       +  + +
Sbjct: 183 AEAGCDSVVMEVSSQGLMLHRTAGIQFEIGIFTNLGEDHIGP---NEHKDFEDYKRCKGI 239

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
           L  +    I   D    E + +             +   +   ++ +             
Sbjct: 240 LFTQCNLGIANVDDRWYEDVFKNATCKVETFGFSEKADLRATDVQHISRPGYLGVKYQVS 299

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +FD    +PG+F VYN+L A  +C    +    +   L+ +  V GR E V  +   
Sbjct: 300 GLMNFDVEIDIPGDFSVYNSLTAIAVCRHFDVPVENIKTALK-VAKVKGRIEMVKVSD-D 357

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  +R     RI+ VFGCGG+R + +R  MG++A  L+D  ++
Sbjct: 358 FTLMIDYAHNAMSLESLLLTLRDYHPQRIVTVFGCGGNRSKTRRYEMGEVAGRLSDFTVI 417

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P+ I  +II G+      +I   +R EAI+  IE     DV+++AGKGHET
Sbjct: 418 TSDNPRFEEPQAIIDDIIVGMKKTDGKYISICDRKEAIKYVIENGQPGDVIILAGKGHET 477

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G K    +  +IREIL 
Sbjct: 478 YQEIK-GVKHDMDERVLIREILE 499


>gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 487

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 160/486 (32%), Positives = 233/486 (47%), Gaps = 14/486 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY +   +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVAGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRVINL--DDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M  +   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G            R +AI   I   N  DV+V+AGKGHE    + NG+++   D    
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEA 475

Query: 490 REILGL 495
              L +
Sbjct: 476 ASALAV 481


>gi|218547542|ref|YP_002381333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355083|emb|CAQ87690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|56412395|ref|YP_149470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361331|ref|YP_002140966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|81359648|sp|Q5PDH1|MURE_SALPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56126652|gb|AAV76158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197092806|emb|CAR58232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 495

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+V +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIVEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
 gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
          Length = 471

 Score =  310 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 148/472 (31%), Positives = 224/472 (47%), Gaps = 10/472 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +F+AI G++ DG  +IPQAIAQG  A++  +     +         P+
Sbjct: 1   MTLDSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +++    LS  A   Y +    +  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLNDLNNRLSALAGEFYHQPSAKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                     +  TT S + +   L+ L +Q  T  ++E SSHGL Q R+  ++  A  F
Sbjct: 121 GNGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNAGCRV 267
           TNL RDH+DYH   ++Y  AK  LF     K             + + + +         
Sbjct: 181 TNLSRDHLDYHGDMESYEAAKWLLFSTHNTKSQIINADDAIGLKWLQRLPQACAVTMENK 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +   +QG ++   +V        +       + DF  PL G F V N LVA    + +  
Sbjct: 241 IPQDWQGPWLKAMEVEYHDKGATIHFDSSWGNGDFESPLMGAFNVSNLLVAMATLLMMDY 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +L     L  V GR E   +      + VDYAHT ++LE  L   R    G++  V
Sbjct: 301 PLNKLLAATSSLSPVCGRMEVF-SAPNKPTVVVDYAHTPDALEKALAAARLHCKGQLWCV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444
           FGCGGDRD+GKRP+MG  A + AD  ++TDDNPRSEDP  I  +I+ G+      +    
Sbjct: 360 FGCGGDRDKGKRPLMGAAAEEYADKIVITDDNPRSEDPIDIINDIMAGLLDSSRALAIPG 419

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+   I   +  DV+V+AGKGHE   I+   +     D   +  +LG+I
Sbjct: 420 RPEAVTNTILQASPDDVIVIAGKGHEDYQIIGQRKLDY-SDRLTVARLLGVI 470


>gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 947

 Score =  310 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 174/492 (35%), Positives = 261/492 (53%), Gaps = 18/492 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ K F  +          ++    + +S D+++I+   IF AI GNK DG+ FIP AI 
Sbjct: 2   LLGKYFHNI-------NKDYKNFYFSGISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAIN 54

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ IV            ++++    +  +N RK L+  A ++Y K P+N++AVTGT+G
Sbjct: 55  KGSKIIVTEKKVK------SVQNGILYIHTNNVRKLLAETAFKIYNKKPKNLIAVTGTNG 108

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH 184
           KSS+A+F  QI + +      IG     S     +   TT  PI LAK LS L S  + +
Sbjct: 109 KSSIANFYFQILKLNNKKVASIGTLGVKSKNINLNLSNTTIDPIKLAKILSKLKSHKIEN 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +EASSHGL Q+RLDG+K  +G FTNL +DH+DYH+  + Y NAK+ LFE L+ K+   
Sbjct: 169 VIMEASSHGLKQNRLDGLKFNSGIFTNLSQDHLDYHKNLKNYLNAKLYLFENLIKKKGNL 228

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I        K++ K   N   ++ ++  +   + +         Q   I +     +   
Sbjct: 229 ITDQLIPEFKKIKKITINKRLKLYALNDKKNNLQVISHSFKGEAQSFKIKLNNSIQNINL 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+ Q+ N L+A        I    +L  + KL  V GRFE +G      ++ +DYAH
Sbjct: 289 NLIGKIQLKNVLMAIIAAKNSNIGLNKILNKIYKLKPVEGRFEKIGKIKNHSKVILDYAH 348

Query: 365 TSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           T ++L+  L N+R    + +IIV+FGCGG+RDQ KR  MGKIA   +D  I+T+DNPR E
Sbjct: 349 TPDALKTCLLNLREQFPAKKIIVLFGCGGNRDQNKRSKMGKIASYFSDKIILTNDNPRLE 408

Query: 424 DPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +P+KIR +          IE  +R  AI  AI  LN  D+L+VAGKGHE    + + +K 
Sbjct: 409 NPQKIRRDIKKGIKKKKIIEISDRAMAITRAIHDLNSGDILLVAGKGHEKTQDIGS-KKI 467

Query: 482 MSVDCDIIREIL 493
              D  +I   +
Sbjct: 468 FFSDKKVILSAI 479



 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 160/471 (33%), Gaps = 38/471 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L       ++ +            + +   +S+ +    IF AI G K DG+ F+ Q+ 
Sbjct: 485 NLSNNLKINVVKESGKIKRLSPLISLKKARINSQEVTKNDIFFAIKGKKNDGNKFVAQSF 544

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            + A   VV+   +  +       ++  + V NT KFL+  +         NI+A+TG+ 
Sbjct: 545 KRKASLAVVNKIQNKLN-------HSRQIKVKNTLKFLTNVSKIFRKSIDTNIIAITGSC 597

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+++   +     +    S        IS  + +N+   P  +      +         
Sbjct: 598 GKTTLKELLGNTLNKISKVS--------ISPKSYNNKFGVPLSL-----FNINQKDEFGI 644

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + V     G   +    I+   G  TN+   H    +  +    A      + +      
Sbjct: 645 LEVGMDKKGEIDYLSKIIEPDVGVITNINYAHAKNFKNIKQIALA-KSEIIDNIRLYGFI 703

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDF 302
           ++ ADD++ K     A     +V+S G +     I L  +     K ++ IS+  K   F
Sbjct: 704 VLNADDSFFKLHYNIAKKKNIKVISFGIKNHKADIKLINIKPFRKKFRINISLNNKRKYF 763

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-- 360
           L     +  +YN L A  +         L         +  GR +         +I +  
Sbjct: 764 LLSNDFQNNIYNILSALAVISIYKNIFKLDKNIFYDFKIPGGRGDHSVIKFNNKKINLID 823

Query: 361 -DYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIA----LDLADIA 413
             Y     SL+  +KN   I   +    ++ G   +     R +   +A        D  
Sbjct: 824 QSYNSNPLSLKSAIKNYDKINLKKSNKYMLIGDMLELGSHSRRLHRSVAPIINKSNIDKV 883

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            V     + +    I  +I           N+ + I    + LN  D L++
Sbjct: 884 YV-----KGKMASIIFKDISK-AKKGRILLNKSQIIELIRKDLNNNDYLMI 928


>gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
 gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
          Length = 529

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 162/519 (31%), Positives = 248/519 (47%), Gaps = 36/519 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+    PE +   +       + +I  +   S  ++ G +FVAI G+  DGH FI
Sbjct: 1   MRLSELLLPVCPESVRSTAAARGVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
            QA+A+GA A+V       +D           + V + R  L+L ++  YG     ++  
Sbjct: 61  DQALARGAVAVVAEKEVDARDAVT--------VRVADARNALALLSAVFYGAPSARLVLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A+ V+ I  ++G     IG  +         N LTTP    L   L  +
Sbjct: 113 GVTGTNGKTTTAALVEHILVKAGKQVGVIGTGNFRYVGRRFKNPLTTPESADLQHILRDM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ GVTHV +E SSH L Q R+ G       FTNL +DH+D+H   + Y+  K RLF   
Sbjct: 173 ATAGVTHVVMEVSSHALAQQRVAGCAFDVAIFTNLTQDHLDFHGDMETYWECKKRLFTGT 232

Query: 238 ----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + ++    +   +      +        R+ +   +   I+ K V +  +    TI
Sbjct: 233 RSVGVREKHMVSVINCNDARGRGLFDTLPVPGRMGAGFAEACDIYPKGVTSSPDGLAGTI 292

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F  PL G + + N L AAG  + +G++ A + E +E    VPGR E V    
Sbjct: 293 VTPAGPIPFCSPLAGTYNLENILCAAGAGVVLGVEGAAIQEGIETFAGVPGRLEKVADRM 352

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  ++VDYAHT ++L+ +L  +R I++GR+  VFGCGGDRD+ KRP MG IA  +AD  
Sbjct: 353 -GRFVFVDYAHTPDALQNVLSALRKISAGRLFCVFGCGGDRDRAKRPKMGGIAATIADRV 411

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------------------GFIEKGNRIEAIRTAIE 454
           +VT DNPRSEDPE I A+I+ G+                     ++ + +R  AIR A+ 
Sbjct: 412 VVTSDNPRSEDPEAIIADIVKGMTGLAERVADVAGLAGKSSNGRYLVEPDRRLAIRAAVS 471

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                D +++AGKG E   I  +       D       L
Sbjct: 472 AAAPGDTILIAGKGEENYQIFRDRTID-FDDRQEAAAAL 509


>gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
 gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
          Length = 484

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 193/495 (38%), Positives = 276/495 (55%), Gaps = 12/495 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  LI +   E+   +S       +  +   + D+R +  G +F A  G + +G  +I
Sbjct: 1   MRLGSLIEELDAEVAKAVSA--AGGLDTSVTGFAIDNRKVAPGTVFGAFQGLRVNGEDYI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA AIV                    +   N R+  +  A+R +   P+  +AV
Sbjct: 59  TEAVRAGAIAIVA--------RPEAQVDGAIHIAAANPRQLFAQLAARFFAPFPDVTVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +QI +  G ++  IG    T S       LTTP  +     ++ L  
Sbjct: 111 TGTNGKTSTVELARQIWRMLGHNAASIGTLGVTTSVDQVSTGLTTPDIVTFLANMAGLRR 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH + EASSHGLDQ+R +G+ ++AG+FTNL RDH+DYH    +YF+AKMRLF+E++ 
Sbjct: 171 EGVTHAAFEASSHGLDQYRTEGLPVVAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVA 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+I+ADD++S++ + RA   G RVLSVG QG+ + L         Q + I  EG  
Sbjct: 231 PDGSAVIWADDSWSEKAIARATKRGLRVLSVGVQGRALQLANRTPTQLGQTLEIEAEGTR 290

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G +Q  NAL AAGL IA G D+A V+E L ++  V GR E    +  G  +Y
Sbjct: 291 YKVNLPLIGAYQAANALTAAGLVIATGGDAARVMELLGRVQPVRGRLERAVISQTGAPVY 350

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L   ++ +R  T GR+I +FG GGDRD GKRP MGK+A DL+D  IVTDDN
Sbjct: 351 VDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGDRDAGKRPQMGKVAADLSDHVIVTDDN 410

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRA ++ G P   E G R +AI  AI      D++++AGKGHE   I+ +  
Sbjct: 411 PRSEEPSAIRAAVLAGAPDAQEIGGRRDAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-R 469

Query: 480 KKMSVDCDIIREILG 494
                D  + RE  G
Sbjct: 470 VLPFDDVTVARECAG 484


>gi|194439405|ref|ZP_03071482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|253774885|ref|YP_003037716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160207|ref|YP_003043315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|194421664|gb|EDX37674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|242375921|emb|CAQ30602.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|253325929|gb|ACT30531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972108|gb|ACT37779.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|253976317|gb|ACT41987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|323960031|gb|EGB55677.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H489]
 gi|323970757|gb|EGB66011.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TA007]
          Length = 495

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKANDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arsenophonus nasoniae]
          Length = 475

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 226/474 (47%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR + AG +F+A+ G+++DG  +I QAIAQG  AI+  +    +  +       P+
Sbjct: 5   MTLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHGVPV 64

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +++    LSL A   Y      +  + VTGT+GK++    + Q  +  G  S  +G  
Sbjct: 65  IYINDLNNQLSLLAGEFYQHPAAKLRLIGVTGTNGKTTTTQLIAQWAKGLGEVSAVMGTV 124

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                     +  TT S + +   L  L  +  T V++E SSHGL Q R+  I   A  F
Sbjct: 125 GNGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAAIPFTAAVF 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH   Q Y  AK  LF      +       DD    + +++   A    + 
Sbjct: 185 TNLSRDHLDYHGDMQNYAAAKWLLFSTHKSDKQIIN--VDDETGLQWLEKLPQACAVSME 242

Query: 270 VGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                 +        +V        +  +          PL G F V N ++A    + +
Sbjct: 243 NRIPTDWQGAWMLVEQVDYHDRGATIHFNSTWGKGSLKSPLMGAFNVNNVMLAMATLLMM 302

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     V++    +  V GR E   +  R   + VDYAHT ++LE  L  +R    GR+ 
Sbjct: 303 GYPFEAVIKSSHAIQPVCGRMEVFTSPGRPT-VVVDYAHTPDALEKALSALRLHCRGRLW 361

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKR +MG +A   ADI +VTDDNPRSE+P+ I  +I+ G       +  
Sbjct: 362 CVFGCGGDRDKGKRALMGSVAEQYADIVVVTDDNPRSEEPKAIINDILSGFLDAGRAMPI 421

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R+EA+ +AI   N  DV+++AGKGHE   I+ +       D   +  +LG++
Sbjct: 422 VGRVEAVTSAIMQANADDVILIAGKGHEDYQIIGDRRLDY-SDRLTVARLLGVM 474


>gi|331650982|ref|ZP_08352010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
 gi|284919865|emb|CBG32920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli 042]
 gi|331051436|gb|EGI23485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
          Length = 495

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|110640298|ref|YP_668026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|191174585|ref|ZP_03036079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|306815317|ref|ZP_07449466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|331661131|ref|ZP_08362063.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
 gi|110341890|gb|ABG68127.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|190905132|gb|EDV64777.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|222031916|emb|CAP74654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Escherichia coli LF82]
 gi|305850979|gb|EFM51434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|312944691|gb|ADR25518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|331052173|gb|EGI24212.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
          Length = 495

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|260596510|ref|YP_003209081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter turicensis z3032]
 gi|260215687|emb|CBA28019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 501

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 11  NLRDLLAPWVA-----------GLPARALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AIV  +     D         P++ +    + LS  A R Y +  + +  + 
Sbjct: 60  QAIAQGVAAIVAEAKGEATDGEVREIHGVPVIYLSQLNERLSALAGRFYDEPSDRLRLIG 119

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q CQR G +S  +G               TT S + +   LS L+
Sbjct: 120 VTGTNGKTTTTQLIAQWCQRLGETSAVMGTVGNGLLGKVSPTENTTGSAVDVQHVLSGLA 179

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  LF    
Sbjct: 180 AQGATVAAMEVSSHGLVQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFS--A 237

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTIS 294
                A+I ADD   +  + +  +A    +         G+++    V        +  S
Sbjct: 238 HHYGQAVINADDEVGRRWLAKLPDAVAVSMENNINPDCHGRWLRADAVEYHDRGATLRFS 297

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A G  +A+    A +LE   +L  V GR E   +   
Sbjct: 298 SSWGDGEIESRLMGAFNVSNLLLALGTLLALDYPLAALLESAPRLQPVNGRMEVF-SAPG 356

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 357 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADVVV 416

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+EDP  I A+I+ G+           R EA+  AI    + DV+++AGKGHE 
Sbjct: 417 VTDDNPRTEDPRAIIADILTGMLDAGRARVVEGRAEAVTNAIMQAAENDVVLLAGKGHED 476

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG +
Sbjct: 477 YQIVGTRRLDY-SDRVTAARLLGAV 500


>gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 487

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 150/506 (29%), Positives = 242/506 (47%), Gaps = 35/506 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+L+ K   + I       +      I  +  DSR  +   +F+A+ G++ DGH +I  
Sbjct: 4   LQELLNKVSVQQI-------IGDTNLPIKSICLDSREAEKDSLFIALPGSQVDGHQYIAD 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AIA G++AI+         +   + ++   + V N  + L   AS  Y        ++AV
Sbjct: 57  AIALGSKAIICEK------YPEHLATHVTYIQVSNVTQALGTIASNFYKNPSTKLKLVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+S    + ++ ++ G S   +    + I+  A  + LTTP+ I + KAL+ + +
Sbjct: 111 TGTSGKTSTVHLLYRLFRQLGYSVGMLSTIHNQINDQAFPSTLTTPNAIDINKALAQMVT 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G     +EASSH + Q+RL G++L    F N+  DH+DYH T  AY  AK +LF+E L 
Sbjct: 171 AGCQFCFMEASSHAIVQNRLAGLELAGALFLNISHDHLDYHLTFDAYIQAKKKLFDE-LT 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +  +   DD   K +++        +           +             + +    
Sbjct: 230 ANAFVLYNIDDKRGKIMIQNTRATTYSMAIQRPADFTAQVLANTWQG------LELRIGG 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +  F L G F   N L A      +G  S  +L  L  +  + GRF+      +   + 
Sbjct: 284 QNVWFQLLGTFNASNLLAAYATACLLGQPSQDILVALSSIKPITGRFQ-HIHTPKKPDVI 342

Query: 360 VDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           +DYAH   +LE IL +I+ I       G+II + GCGG+RD  KRP+M +IA  L+D  I
Sbjct: 343 IDYAHKPEALEKILLSIQQIRESAKQQGKIITIIGCGGNRDTQKRPMMARIAYKLSDQLI 402

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPR EDP+ I  E+  G+        I   +R EAI+ A +M    D++++AGKGH
Sbjct: 403 LTSDNPRYEDPKAIIEEMKQGLRSAEQLKTITIIDRAEAIQAAYQMAQPADIILIAGKGH 462

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E    +  G K    D +I+ +++ +
Sbjct: 463 ENYQEIA-GIKYPLSDEEIVSKLMAV 487


>gi|218703345|ref|YP_002410864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UMN026]
 gi|293403157|ref|ZP_06647254.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298378687|ref|ZP_06988571.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
 gi|218430442|emb|CAR11308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291430072|gb|EFF03086.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298281021|gb|EFI22522.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
          Length = 495

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLSDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   + +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLSDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|323964819|gb|EGB60286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli M863]
          Length = 495

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|71082737|ref|YP_265456.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 948

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 165/483 (34%), Positives = 244/483 (50%), Gaps = 10/483 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           + N L     +++  +   +S +S   +  +IF AI G K DG  FI  AI +GA  I+ 
Sbjct: 3   IGNFLKNIKKEFKNHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIIS 62

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
              +        I++    L   N RK LS  + +     P+N++AVTGT+GKSS+A F 
Sbjct: 63  EQKFE------GIKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFY 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q+          IG     +  + +    TT  PI L+K L+ L  Q + +V +EASSH
Sbjct: 117 FQLLNLGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNDLKKQKIDNVIMEASSH 176

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q+RLDG+K     FTNL  DH+DYH+T   Y  +K+ LFE+LL      I  +    
Sbjct: 177 GLKQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPE 236

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K + + + N    + ++      I +       +KQ V I    K +     L G+ Q+
Sbjct: 237 YKNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLKINLIGKIQL 296

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N  +A        +    +++   ++  V GRFE +GT     ++ +DYAHT ++L+  
Sbjct: 297 KNLFMAMLAAKKSNLKFDQIVKLASRVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTC 356

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           L N++    + RI +VFGCGG+RD+ KRPIMGKIA    D   +TDDNPR E+P+KIR  
Sbjct: 357 LTNLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLA 416

Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I   I      E  +R +AI  AI  L   D+LV+AGKGHE      N   K S   +I+
Sbjct: 417 IKKTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEIL 476

Query: 490 REI 492
           + I
Sbjct: 477 KNI 479



 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 139/384 (36%), Gaps = 29/384 (7%)

Query: 2   KLQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           KL++  L       ++ ++S  P      KI   S +S+ I+   IF AI GN +DG+L+
Sbjct: 480 KLKNKILSTNIKINILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLY 539

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A   GA  ++ ++    +            +VVD+T + L+  +S+L       I++
Sbjct: 540 VNEAFQNGASLVIANNQKKSKKK----------IVVDDTLQLLTEASSKLRENLSSKIIS 589

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK+S+   + +   +    +         S  + +N+   P  +      +   +
Sbjct: 590 ITGSCGKTSLKELLGKTLSKISNVT--------YSPKSFNNKFGVPLSL-----FNLKKN 636

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +     G   +    IK   G  TN+   HI   +       AK  +   +  
Sbjct: 637 DEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEIINNIKT 696

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                +   D  Y+                    +   I+L+K+    +K ++ ++V  K
Sbjct: 697 NGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKERSKYKIFVNVNKK 756

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F   L  E  + N L    +         L         +  GR + +    +   I
Sbjct: 757 QIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYEMTKGRGDIIKVKLKKKSI 816

Query: 359 YV---DYAHTSNSLEMILKNIRTI 379
           Y+    Y     SL+  +KN   +
Sbjct: 817 YIVDESYNSNPLSLKSAIKNFDEL 840


>gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           frigidimarina NCIMB 400]
 gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 496

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 151/502 (30%), Positives = 235/502 (46%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+   F     +            +N ++ DSR ++ G +FVA+ G+K DG  FI
Sbjct: 1   MLLNDLLAPWFHYSGRES-----------VNGLTLDSRDVERGGLFVALPGHKVDGRAFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSAT-IRSNTPILVVDNTRKFLSLFASRLY--GKHPENI 117
           PQAI  GA AI++ +    +      ++   P++      + LS  A++ Y       ++
Sbjct: 50  PQAINAGATAILIHTDNPDEHGIVDRLQYTVPLVFFCQLGRQLSAVAAQFYLSNSQSLSL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+SV+  + QI    G  +  +G           D+  TT   I + + LS 
Sbjct: 110 IGITGTNGKTSVSQIIAQIVYLLGHQAAVMGTLGNGLWGQLVDSGNTTADAITVMRQLSE 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +++G    ++E SSHGL Q R++        FTNL RDH+DYH    +Y  AK RLF+ 
Sbjct: 170 FAAEGAELCAMEVSSHGLVQGRVEAAPFEIAVFTNLSRDHLDYHGDMDSYAAAKKRLFKF 229

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV- 295
              K     I      +K + + A +        G      +   +         T+   
Sbjct: 230 PSIKHGVINIDDA-VGAKWLTELASDQNKSFSIKGNSAADFYCDAIEYHDAGVTATLHFV 288

Query: 296 -----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                +        PL G F + N + A  +    G   A +L  L  L  V GR E   
Sbjct: 289 EIDSEKSVSVQLNSPLLGAFNLSNLVAAIAVLYLQGKPMASILAVLPLLIPVAGRMERF- 347

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           ++     + VDYAHT +++E  LK +R    G +  VFGCGGDRD+GKRP+M + A   A
Sbjct: 348 SSVNNATLVVDYAHTPDAIEQALKALRLHCKGTLWCVFGCGGDRDKGKRPLMAQAAERYA 407

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D  ++T DN RSEDP+ I  +I+ GI      + + +RIEAI   + +    D++++AGK
Sbjct: 408 DKVMITSDNARSEDPQTIINDILQGISQPQKVLTRVDRIEAITHVVSLAQVNDIVLLAGK 467

Query: 468 GHETVHIVTNGEKKMSVDCDII 489
           GHET   V  GE+    +  + 
Sbjct: 468 GHETYQEVA-GERIDYDERALA 488


>gi|170025738|ref|YP_001722243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|169752272|gb|ACA69790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis YPIII]
          Length = 495

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 166/493 (33%), Positives = 237/493 (48%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G               TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       A
Sbjct: 184 VSSHGLIQDRVAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A    +      G+ G ++   KV    N   +       + +   
Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +  G   A +L     L  V GR E          + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILG 494
              D   +  +LG
Sbjct: 481 Y-SDRVTVARLLG 492


>gi|170768391|ref|ZP_02902844.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
 gi|170122495|gb|EDS91426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
          Length = 495

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 169/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P               R + E++ DSR   +G +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------GAPSRALREMTLDSRVAASGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINSNCHGRWLKAIEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|157159417|ref|YP_001461255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209917278|ref|YP_002291362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218552668|ref|YP_002385581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI1]
 gi|218693554|ref|YP_002401221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 55989]
 gi|293476745|ref|ZP_06665153.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|331666322|ref|ZP_08367203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331680658|ref|ZP_08381317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
 gi|157081447|gb|ABV21155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209910537|dbj|BAG75611.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218350286|emb|CAU95969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218359436|emb|CAQ96974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|291321198|gb|EFE60640.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|323945714|gb|EGB41762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H120]
 gi|324118435|gb|EGC12329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1167]
 gi|331066533|gb|EGI38410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331072121|gb|EGI43457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
          Length = 495

 Score =  310 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 EQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|267991801|gb|ACY86686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
          Length = 495

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QGVT  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGVTFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
 gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
          Length = 484

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 229/495 (46%), Positives = 314/495 (63%), Gaps = 16/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL           L +      + ++  +SSDSR ++ G +F A+ G K DG  + 
Sbjct: 1   MKLRDL--------AGVLPVEGTASADLEVTGISSDSRQVKPGVVFFALAGTKADGAAYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA A+V   + S+           P+L VD+ R  L+L A+R +GK P  ++AV
Sbjct: 53  ADAARRGALAVVAGKSNSVAGLP------VPVLTVDDPRLALALSAARYFGKQPRTMVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +++G ++  IG T  ++    +   LTTP P+ L + L  L+ 
Sbjct: 107 TGTSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLRELAD 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVT+ S+EASSHGLDQ RLDG+KL AG FTNLGRDH+DYH T + Y  AK+RLF+ LLP
Sbjct: 167 AGVTYASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLP 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +PA+I+ADD +S   ++ A  AG  VL+VG  G F+ LK+V    ++Q+  +  EG  
Sbjct: 227 KGAPAVIFADDPWSAPTIQAAQAAGLNVLTVGRHGDFLTLKRVEHERHRQRAEVEAEGVL 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           ++   PL G+FQ+ NALV+AGL I+ G   A  L  LEKL   PGR + VGT   G  +Y
Sbjct: 287 YEIDLPLAGDFQISNALVSAGLAISTGTPVAKALAALEKLKGAPGRLDLVGTTVSGAPVY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+IA  LAD+ IVTDDN
Sbjct: 347 VDYAHKPDALENVLASVRPFTTGRVMVVFGCGGDRDRGKRPIMGEIATRLADVVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE PE IRA I+   PG IE G+R +AI  A+ ML+  D L+VAGKGHE    + + E
Sbjct: 407 PRSEVPETIRAAILAAAPGAIEIGDRRKAIHEAVGMLHAGDTLIVAGKGHEEGQTIGS-E 465

Query: 480 KKMSVDCDIIREILG 494
                D + +R  L 
Sbjct: 466 TLHFSDHEEVRAALR 480


>gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
 gi|123556803|sp|Q31N55|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
          Length = 497

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 160/499 (32%), Positives = 236/499 (47%), Gaps = 14/499 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     +++           +  I  + +DSR  Q G +F+ + G + DG  F 
Sbjct: 1   MNLRSLLASTPTQVLQP----QHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AIA      V+ +  +L     +      +++ D         A+  Y +  +   ++
Sbjct: 57  PEAIAA-GAVAVIVTPTALAQRPLSANPEACLILSDQMPVTAGAIAAAFYNQPAQTLKLI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    V+     +   +  +G   +    +++  + TTP    L   L+  
Sbjct: 116 GVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQAQLATA 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH LDQ R++G       FTNL +DH+DYH T +AYF AK RLF   
Sbjct: 176 VDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGTMEAYFAAKARLFAPP 235

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+I ADDAY + ++       C   SV     F     +       + TI    
Sbjct: 236 -YLRGKAVINADDAYGQRLITMTPPGQCLTYSVVGTADFC-TTDLQYGPTGVEGTIKTPD 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F F  PL G+F + N L A      +G+    +L  +     VPGR E V        
Sbjct: 294 GAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGRMERVVGQDSDPT 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G +I VFGCGGDRD+ KRP+MG+IA  LAD  I+T 
Sbjct: 354 VIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRPLMGEIAARLADRVIITS 413

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP +I A+I+ GIP     + + +R  AIR AI      D +++AGKGHE   I
Sbjct: 414 DNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQI 473

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +    K    D +  R  L
Sbjct: 474 LGT-TKIHFDDREQARLAL 491


>gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
 gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
          Length = 482

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 222/477 (46%), Gaps = 21/477 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
              +I  + +DSR ++ G +FV + G   D H F              +   +       
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I  + P+++V NT + L++ A   YG+    +  + +TGT+GK++ +  + +I +  G  
Sbjct: 61  IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD  R+ G 
Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRLFEELLPKESPAIIYADDAYSKEVMK 258
                 FTNL +DH+DYH+T + Y +A      +L            +   D    E   
Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R+  A      +  +   +  K +         T+    +  +    L G+F VYN L A
Sbjct: 241 RSTAATVVTYGIDTRSDIM-AKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAA 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  G+    ++  +++L  VPGRFE V    +   + VDYAHT +SLE +LK  + 
Sbjct: 300 TAAGLVSGVKLETIIAVIKELAGVPGRFEVV-DGGQNYTVIVDYAHTPDSLENVLKTAKQ 358

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G   
Sbjct: 359 FAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASG 418

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +    +R EAI  AI  +   D++++AGKGHET  I+   E     D ++ +E +
Sbjct: 419 NNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIG-KEVHHFDDREVAKEAI 474


>gi|157159556|ref|YP_001456874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|254037500|ref|ZP_04871577.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|256025399|ref|ZP_05439264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia sp. 4_1_40B]
 gi|301028568|ref|ZP_07191798.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|307136686|ref|ZP_07496042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli H736]
 gi|331640538|ref|ZP_08341686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331681470|ref|ZP_08382107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|157065236|gb|ABV04491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|226840606|gb|EEH72608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|299878379|gb|EFI86590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|309700296|emb|CBI99584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli ETEC H10407]
 gi|323935137|gb|EGB31504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1520]
 gi|323939875|gb|EGB36075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E482]
 gi|324112502|gb|EGC06479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia fergusonii
           B253]
 gi|331040284|gb|EGI12491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331081691|gb|EGI52852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|332341417|gb|AEE54751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Escherichia coli UMNK88]
          Length = 495

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 483

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 156/502 (31%), Positives = 238/502 (47%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+                   +  ++++ +DSR ++ G +FVA  G   DG L+I
Sbjct: 1   MKLTQLLEPWIK----------RDIIDGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
                +   +  V+  Y   +    I   +  P + +    + L   A R +    + + 
Sbjct: 51  ----EKAVASGAVAVVYEPNNLPQGITLPTAIPCIAIPQLAEKLGEIAKRFFNNPSQFLG 106

Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALS 175
              VTGT+GK+++A  + Q     G  S  IG          +    TTP  + L + + 
Sbjct: 107 LTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLMH 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G+  V +E SSH L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLFE
Sbjct: 167 QYKEEGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFE 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   AII  DD +   +         +V    +Q   +   +        ++ +  
Sbjct: 227 RAELQW--AIINQDDDFQDLMSNVLKTHVKKVTYGMHQNCDVKALQWNMDITGTEIEVKS 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                       G+F +YN+L      +A G +   V++ + +L   PGR E V  +   
Sbjct: 285 PWGHQLLKIKALGKFNIYNSLAVYSSLLASGHNPEKVVQVMAELKAAPGRMEIVAQSPY- 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  ++
Sbjct: 344 --VLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVI 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPRSEDPE I  EI  GIP      +  NR EAI  A+      D++++AGKGHE+ 
Sbjct: 402 TSDNPRSEDPEIILNEIACGIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESY 461

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             + N  K +  D +++R ++ 
Sbjct: 462 QQIGN-TKHVFSDQEVVRRLMN 482


>gi|170021559|ref|YP_001726513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ATCC 8739]
 gi|188493001|ref|ZP_03000271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
 gi|169756487|gb|ACA79186.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli ATCC
           8739]
 gi|188488200|gb|EDU63303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
          Length = 495

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
          Length = 502

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 160/499 (32%), Positives = 236/499 (47%), Gaps = 14/499 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     +++           +  I  + +DSR  Q G +F+ + G + DG  F 
Sbjct: 6   MNLRSLLASTPTQVLQP----QHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFW 61

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P+AIA      V+ +  +L     +      +++ D         A+  Y +  +   ++
Sbjct: 62  PEAIAA-GAVAVIVTPTALAQRPLSANPEACLILSDQMPVTAGAIAAAFYNQPAQTLKLI 120

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    V+     +   +  +G   +    +++  + TTP    L   L+  
Sbjct: 121 GVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQAQLATA 180

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH LDQ R++G       FTNL +DH+DYH T +AYF AK RLF   
Sbjct: 181 VDAGCQAAVMEVSSHALDQGRVNGCGFDVAVFTNLTQDHLDYHGTMEAYFAAKARLFAPP 240

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+I ADDAY + ++       C   SV     F     +       + TI    
Sbjct: 241 -YLRGKAVINADDAYGQRLITMTPPGQCLTYSVVGTADFC-TTDLQYGPTGVEGTIKTPD 298

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F F  PL G+F + N L A      +G+    +L  +     VPGR E V        
Sbjct: 299 GAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGRMERVVGQDSDPT 358

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G +I VFGCGGDRD+ KRP+MG+IA  LAD  I+T 
Sbjct: 359 VIVDYAHTPDSLENLLKAARPFIQGELICVFGCGGDRDRTKRPLMGEIAARLADRVIITS 418

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP +I A+I+ GIP     + + +R  AIR AI      D +++AGKGHE   I
Sbjct: 419 DNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILSAQPGDGVLLAGKGHEDYQI 478

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +    K    D +  R  L
Sbjct: 479 LGT-TKIHFDDREQARLAL 496


>gi|312966213|ref|ZP_07780439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|312289456|gb|EFR17350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
          Length = 495

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
 gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
          Length = 514

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 152/496 (30%), Positives = 238/496 (47%), Gaps = 20/496 (4%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +    L++ ++       +R I  V +DSR + AG +F+A+ G + +G  F  QAI QG
Sbjct: 9   AQTLKALLHGIAEVSA-AADRPIRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQG 67

Query: 68  AEAIVVSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTS 124
           A A++   +        +  ++   +L + +  + +S  ++R  G    N+    VTGT 
Sbjct: 68  AVAVLSEQSIEEPSLLESASAHQVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTD 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+SVA F+ Q           +G   + +       + TTP  + L +  S    QG+ 
Sbjct: 128 GKTSVAHFLAQALTALNPPVALVGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIR 187

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           HV++E SSHGLDQ R++G+       TNLGRDH+DYH++   Y +AK +LF         
Sbjct: 188 HVAMEVSSHGLDQGRVNGVAFDLAVLTNLGRDHLDYHRSMADYADAKRQLF---YKSGLK 244

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-------IHLKKVCAIHNKQQVTISVE 296
           A +   D     ++         V   G+ G         +    +    +  +  +S  
Sbjct: 245 ASVLNCDDDFGCMLALELEERLPVYGYGFDGDMSPQMTARVRGHNLQLTVDGLRFDVSSG 304

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+ +     L G F   N L      +A+G+     +E + +L  VPGR E       G 
Sbjct: 305 GQRYTVDVALMGRFNASNVLAVITSLLALGVPLPEAVEVVSRLQPVPGRME-CLKLPNGA 363

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              VDYAHT  +LE  L ++R  + GR+  VFGCGGDRD+GKRP+MG+ A   +D   +T
Sbjct: 364 VAVVDYAHTPQALEQTLSSLREHSGGRLFTVFGCGGDRDKGKRPLMGRAAERFSDALWLT 423

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DDNPRSE PE I  +I  G+          +R  AI+ A+E     DV+++AGKGHE+  
Sbjct: 424 DDNPRSEKPEAIIDDICEGLDAPQLAHRIHSREAAIQAALESAAPGDVVLIAGKGHESEQ 483

Query: 474 IVTNGEKKMSVDCDII 489
           +V   E     D +++
Sbjct: 484 VVG-QEVIAFNDSEVV 498


>gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+   LI       +    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  +
Sbjct: 1   MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAI +GA+ IV S    +         N P++ V+NT + +++ A   YG   + +  +
Sbjct: 56  DQAIEKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++QI +    ++  IG     I         TTP  I   + L+ +
Sbjct: 107 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L
Sbjct: 167 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 226

Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             K         A++  DD   +E     + A   +         I+ + V    +  + 
Sbjct: 227 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 284

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +SV G        L G+F VYN L A     A GI    +++ LEK+  V GRF+ V  
Sbjct: 285 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 343

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +  G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ + 
Sbjct: 344 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 403

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGH
Sbjct: 404 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 463

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E   I+    K    D +   + L L
Sbjct: 464 EDYQIIGR-TKHHFDDSEEAAKALAL 488


>gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter heparinus DSM 2366]
 gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM
           2366]
          Length = 485

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 150/506 (29%), Positives = 244/506 (48%), Gaps = 32/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQD++Y     + +Q+ +       RK++ +  DSR +     F AI G   DGH +I
Sbjct: 1   MQLQDILYGV--TITDQIGVT-----NRKVSALVFDSRQVIKDAAFFAIKGTLADGHTYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
              ++ GA  ++           A I  +   + V N+   L   A+  YG   E +   
Sbjct: 54  AATVSAGAGVVICE------VLPAEIAPDVTYIQVANSAVALGRMAANFYGNPSEKLQLT 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++A+ + ++ +  G     I    + I+        TTP P+ L   L  +
Sbjct: 108 GITGTNGKTTIATLLFKLFRALGYKVGLISTVENHINDEVIPATHTTPDPLALNALLQDM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH + QHR++G+    G F+N+  DH+D+H+T   Y  AK   F + 
Sbjct: 168 VDAGCDYCFMEVSSHAVVQHRIEGLSFAGGVFSNITHDHLDFHKTFDQYIKAKK-AFFDA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP  + A+   DD     +++    A               + +           + ++ 
Sbjct: 227 LPASAFALTNLDDKNGMVMLQNTRAAKKTYALKQLADFKAKVIENSFKG------LHLDI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D D  F L G F  YN L   G  + +G +   VL  L  L    GRF+   T+S+   
Sbjct: 281 DDADVFFKLVGSFNAYNLLAVYGTAVLLGQEKLDVLTLLSNLTGAEGRFD-YITSSQHII 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++++ +L  I+ I  G  ++I + GCGGDRD+ KRPIM ++A D +D  I+
Sbjct: 340 GIVDYAHTPDAVQNVLSTIQDIRKGTEQVITIIGCGGDRDKTKRPIMAQVACDWSDKVIL 399

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR+E+P+ I  E+  G+        +   +R EAI+TA  +    D++++AGKGHE
Sbjct: 400 TSDNPRTENPQTIVEEMEKGVSPTNKRKTLSIVDRKEAIKTACHLARPGDIILLAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
               + NG +    D +I+ E L LI
Sbjct: 460 KYQEI-NGVRYHFDDKEILTEQLNLI 484


>gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
 gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
          Length = 491

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSE+P  I  +++HG     +    +R EAI  AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D +I +E +
Sbjct: 462 TYQIIG-KDVHHFDDREIAKEAI 483


>gi|218698508|ref|YP_002406137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI39]
 gi|218368494|emb|CAR16229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI39]
          Length = 495

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dyadobacter fermentans DSM 18053]
 gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans
           DSM 18053]
          Length = 491

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 142/498 (28%), Positives = 231/498 (46%), Gaps = 28/498 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     E+   +      + +  +  +  DSR +  G +FVA+ G + DGH FI  A  
Sbjct: 6   ILSSLLGEVKGAI---IHGYADVTVKNIILDSRKVLPGSLFVALRGTQVDGHQFITTAAD 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
            GA AI+        +    +R +   + V+++   +   A+  YG   + +  + VTGT
Sbjct: 63  LGAVAILCE------ELPEHVREDITYIQVEDSAAAMGHIAAAFYGHPSKKVKLVGVTGT 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+SVA+F+ Q+ +  G  S  +    + I      +  TTP  + L   L+ ++++  
Sbjct: 117 NGKTSVATFLFQLFRALGYRSGLLSTVQNQIEDEVIPSTHTTPDAVALNALLAQMAARNC 176

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           +HV +E SSH + QHR+ G+    G FTN+  DH+D+H+T   Y  AK   F + LPK +
Sbjct: 177 SHVFMEVSSHSVAQHRITGLHFAGGIFTNITHDHLDFHKTFDNYIKAKK-GFFDALPKSA 235

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD     +++                    +             + ++    + 
Sbjct: 236 FALVNIDDRRGTVMVQNTKARVETYSLQTLATFKGKIISDTLAG------MHMDINSQEV 289

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            F + G F  YN L   G  + +G     VL  L  L   PGRFE   +        VDY
Sbjct: 290 WFRVIGRFNAYNLLAVYGAAVLLGEKEEAVLTELSNLKSPPGRFEQFHSADL-IVGIVDY 348

Query: 363 AHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AHT ++LE +L+ I  + +G    + V GCGG+RD  KRP M +IA   ++  I+T DNP
Sbjct: 349 AHTPDALENVLETITHLRNGNEQVVTVVGCGGNRDAEKRPKMAEIACRYSNRVILTSDNP 408

Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           R EDP  I  ++  G+P           +R EAI  A       D++++AGKGHE    V
Sbjct: 409 RFEDPMDILDQMRKGVPPLDYKKTTVIEDRHEAILKAGLEAQPGDIILIAGKGHENYQDV 468

Query: 476 TNGEKKMSVDCDIIREIL 493
             G K    D +++ E+ 
Sbjct: 469 K-GVKHHFDDKEVLMEVF 485


>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa]
 gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 151/521 (28%), Positives = 256/521 (49%), Gaps = 39/521 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+ +        + +  +   E +I  +  DSR + AG +FV  VG K DGHL++
Sbjct: 244 MSLAELLDES-----KVVPVSVLGDLEVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYL 298

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A  +GA A+V S    +++          +++V++T   L   A+  Y    +N+  +
Sbjct: 299 SEADKRGAVAVVASKEVDIEETLGCKA----LVIVEDTNAVLPALAAAFYKFPSKNMAVI 354

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176
            +TGT+GK++ A+ V+ + +  GL +  +   +         +   T P  I +   ++ 
Sbjct: 355 GITGTNGKTTTANLVKGMYEAMGLRTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAK 414

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   V +EA+S GL   R D +      FTNL RDH+D+H T++ Y NAK +LF  
Sbjct: 415 MLHNGTEAVVMEATSQGLALGRCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFAR 474

Query: 237 LLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++  E    +   D  +    + +          ++  +   +H  K      + QV ++
Sbjct: 475 MVDPERHRKVVNVDDPNAPFFIAQGNQEVPVVTFAMENKNADVHPLKYELSLFETQVLVN 534

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 +    L G+  +YN L A  + IA+G     ++  +E++  VPGR E +    +
Sbjct: 535 TPHGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELI-DEEQ 593

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++L  +L ++R +   RII V GCGG+RD+GKRPIM KIA D +D+ I
Sbjct: 594 AFGVIVDYAHTPDALSRLLDSVRELRPKRIITVIGCGGERDRGKRPIMTKIATDKSDMTI 653

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------------GN-RIEAIRTA 452
           +T DNPR EDP  I  +++ G+   +++                      + R  A+R A
Sbjct: 654 LTSDNPRGEDPLDILDDMLAGVGWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAVRCA 713

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + M  + D++VVAGKGHET  I  + +K+   D +  RE L
Sbjct: 714 VAMGEEGDMVVVAGKGHETYQIEGD-KKEFFDDREECREAL 753


>gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
 gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
          Length = 489

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 199/484 (41%), Positives = 276/484 (57%), Gaps = 3/484 (0%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +      P     RKI  +++DSR +Q G++F A  G   DG  F P A A      +
Sbjct: 4   EYLAAGLTLPEAAGARKITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAA-GAIAI 62

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           + +  +  +  A +     ++     R+  +  A+R YG  P+ I+AVTGT+GK+SVA F
Sbjct: 63  LCAEDAAAEVRALVPETVAVVSAVEPRQVFAKMAARFYGAQPDTIVAVTGTAGKTSVAHF 122

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +QI Q +G  +  +G    I    +    LTTP P+ L K L+ L  +GV H ++EASS
Sbjct: 123 ARQIFQAAGHPAASLGTLGLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNHAALEASS 182

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ+RLDG++L A +FTNLGRDH+DYH T + Y NAK+RLF ELLP     ++   + 
Sbjct: 183 HGLDQYRLDGVRLTAAAFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTVVLDPGEK 242

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           Y+  VM  A   G  V +VG  G+ + L  +  +   Q++TI     ++    PL G FQ
Sbjct: 243 YADRVMAVAQERGLPVFTVGETGRNLTLTGLRPVGAGQELTIQSVRGEYKVTLPLIGRFQ 302

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL+AAGL I+ GID+   L  LE L   PGR E  G    GG I+VDYAH  ++L+ 
Sbjct: 303 VSNALIAAGLAISAGIDTGTALRALENLKGAPGRLELAGRTPAGGLIFVDYAHKPDALDN 362

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  ++    G++ VV G GGDRD GKR +MG++A   AD+ IVTDDNPRSEDP  IR  
Sbjct: 363 ALVALKPFARGKLSVVIGAGGDRDPGKRELMGEVAARRADLVIVTDDNPRSEDPAAIRKA 422

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           ++ G PG IE G+R EAI   +  L   D+L VAGKGHET  IV +       D + ++ 
Sbjct: 423 VMSGAPGAIEIGDRYEAIAEGVRRLKDGDILCVAGKGHETGQIVGD-TVIPFSDHEAVKR 481

Query: 492 ILGL 495
            + L
Sbjct: 482 AISL 485


>gi|16763513|ref|NP_459128.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989996|ref|ZP_02571096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168234887|ref|ZP_02659945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737109|ref|YP_002113141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262729|ref|ZP_03162803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|204926802|ref|ZP_03218004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|21362703|sp|Q8ZRU7|MURE_SALTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16418622|gb|AAL19087.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194712611|gb|ACF91832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197240984|gb|EDY23604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197291875|gb|EDY31225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323467|gb|EDZ08662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205331379|gb|EDZ18143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245356|emb|CBG23145.1| Meso-diaminopimelate-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301156751|emb|CBW16226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911092|dbj|BAJ35066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222302|gb|EFX47374.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323128443|gb|ADX15873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|332987076|gb|AEF06059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 495

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
 gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
          Length = 493

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 149/502 (29%), Positives = 227/502 (45%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   E++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPY-----------AGEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117
            +A+AQGA A++V +    +            +      + +S  A+  Y         I
Sbjct: 51  DKALAQGATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+S +    Q+       +  +G           D+  TT   I L + L  
Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK  LF  
Sbjct: 171 FADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRF 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293
                    +  DD      +    N   ++     +       + K         Q T+
Sbjct: 231 DSLLHGLVNL--DDPVGAAWLSELANVPAKMWGFSIEAHTEVAFYTKNAQFNDQGVQATL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D   PL G F + N L A       G+D   +   +  L  V GR E   T  
Sbjct: 289 VWPEGEVDIRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTAD 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  
Sbjct: 349 -NITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV+++AGKGHE
Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDVILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G +    +  + R++
Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488


>gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
 gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
          Length = 487

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 147/502 (29%), Positives = 235/502 (46%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++           + ++ E+ +DSR +  G +FV I G   DGH ++
Sbjct: 1   MKLTQLLERLEYEVVQGDD-------QIEVTELINDSRKVTEGSVFVCISGAVSDGHAYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            Q   +GA A++V       +          ++ V+NTR  L+L ++  +G   E   ++
Sbjct: 54  QQVAEKGAAAVIVEKDVEAPE-------GLTVIKVENTRYALALTSAAYFGYPAEKLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I +  G+    IG   + I   +     TTP    + K  S +
Sbjct: 107 GITGTKGKTTTTYMVKSILEEVGIKVGLIGTIEAIIGDKSIPANNTTPESYTIQKYFSEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SS GL   R  GI    G FTNLG DHI     +   FN        L
Sbjct: 167 VEEGCECVVMEVSSQGLKLDRTAGIPFEIGIFTNLGEDHIG--PNEHKDFNEYKYCKSLL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296
             +    I   DD + +++ K A                   +K +              
Sbjct: 225 FKQCKIGIGNVDDKWFEDIFKDATCKVETFGFSEKADIRATDVKHISRPGYLGVQYHVAG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             DFD    +PG+F VYN+L A  +C   G+    + + L+ +  V GR E +  +    
Sbjct: 285 LMDFDVEIDIPGDFSVYNSLTAIAVCRHFGVPVEDIKKALK-VARVKGRIEMIKVSD-DF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + +LE +L  +R     RI+ VFGCGG+R + +R  MG+++  L+D  I+T
Sbjct: 343 TLMIDYAHNAMALESLLDTLRDYHPERIVTVFGCGGNRSKTRRYEMGEVSGKLSDFTIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR E+P+ I  +I+ G+      +I   +R EAI+ AIE     DV+++AGKGHET 
Sbjct: 403 SDNPRFEEPQAIIDDIVVGMKKTDGKYITICDRKEAIKYAIEHGQPGDVIILAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +  G K    +  +I+E+L 
Sbjct: 463 QEIK-GVKHDMDERVLIKEVLE 483


>gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           MurE [Pantoea ananatis AJ13355]
          Length = 471

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 158/472 (33%), Positives = 231/472 (48%), Gaps = 14/472 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVAI G++ DG  FIPQAIAQG  A++  +     D         P+
Sbjct: 1   MTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +    + ++ VTGT+GK++    + Q     G +S  +G  
Sbjct: 61  IYLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGKTTTTQLLAQWASLLGETSAVMGTV 120

Query: 151 STI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L  L  +G +  ++E SSHGL QHR+  +   A  F
Sbjct: 121 GNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRVAALPFSAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH   Q Y +AK  LF E   +   AII ADD   +  +    +A    + 
Sbjct: 181 TNLSRDHLDYHGDMQQYESAKWLLFSE--HQVGVAIINADDEVGRRWLANLPDAVAVTME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G  G+++    V    N   +       + +    L G F V N L+A    +A+
Sbjct: 239 NNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L    +L  V GR E   + +    + VDYAHT ++LE  L+  R    G++ 
Sbjct: 299 GYALDDLLRAAARLQPVNGRMEVF-SATGKPTVVVDYAHTPDALEKALEAARLHCKGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            +FGCGGDRD+GKRP+MG IA   ADI +VTDDNPRSEDP+ I  +I+ G+         
Sbjct: 358 CLFGCGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSGLLDPGRARVV 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             R +A+ + I      D+++VAGKGHE   I+ N       D   +  +LG
Sbjct: 418 AGRAQAVTSTIMQAQPDDIVLVAGKGHEDYQIIGNQRLDY-SDRATVATLLG 468


>gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
 gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
          Length = 491

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 145/503 (28%), Positives = 235/503 (46%), Gaps = 30/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  + +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
              GV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEHGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +E  A++  DDA + E M+                     K +         T
Sbjct: 225 GNSYNHNREKYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVM--AKDIVMTSGGTTFT 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V   
Sbjct: 283 LVTPYESVNVTMKLIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGRFEVV-DG 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A   A  
Sbjct: 342 GQNYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATRYATH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           AI T DNPRSE+P  I  +++HG     +    +R EAI  AI     +D++++AGKGHE
Sbjct: 402 AIYTSDNPRSEEPGAILDDMVHGAIGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T  I+   +     D +I +E +
Sbjct: 462 TYQIIG-KDVHHFDDREIAKEAI 483


>gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
 gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 497

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 238/500 (47%), Gaps = 21/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+             F      +++  +  +S   + G +F+ + G + +G  F 
Sbjct: 1   MNLRELLT-----AAAITPGFEHPALNQEVKSLRMNSWECEPGSLFIGMPGTRVEGGNFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P A+A GA A VVS     ++  A       ++VV +  +     A+  Y    +++  L
Sbjct: 56  PSALAAGAIAAVVSPQAKPREGEA------CVIVVPDIERACGRLAAAFYNYPSQHLSLL 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            VTGT+GK++    V+ +  R G  +  +G   +      +    TTP  + L + L+  
Sbjct: 110 GVTGTNGKTTTTHLVEHLLNRVGYPTALLGTLYSRWPGHCEVASHTTPFAVTLQEQLAAA 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SSH L Q R+ G +    +FTNL +DH+DYH+  + YF AK +LF   
Sbjct: 170 VDAGCRFGVMEVSSHALAQDRVWGCQFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTAD 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AI+  DD + + + ++          +     F   + +    N     +    
Sbjct: 230 -YLKGRAILNGDDPFGQRLAQQLPRDRYWTYGLSKDADF-RAENLNYRSNGVTGAVHTPL 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGG 356
                  PL G+F V N L A  +  A+G+    +L  L     VPGR E V     +  
Sbjct: 288 GSGTLDSPLVGQFNVANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQDI 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +L+  R    G++I VFGCGGDRD+ KRP MG IA  LAD  +VT
Sbjct: 348 TVVVDYAHTPDSLENLLRAARPFIPGKLICVFGCGGDRDRSKRPQMGAIAARLADQVVVT 407

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E+P++I  +I+ GIP     I +G+R +AI  AI      D +++AGKGHE   
Sbjct: 408 SDNPRTENPQRILDDILAGIPPETAMIVEGDRRQAILQAILTAAPGDGVIIAGKGHEDYQ 467

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 468 ILGT-EKVHFDDREEARNAL 486


>gi|156935395|ref|YP_001439311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533649|gb|ABU78475.1| hypothetical protein ESA_03253 [Cronobacter sakazakii ATCC BAA-894]
          Length = 471

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 170/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREIHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  E +  + VTGT+GK++    + Q CQR G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYDEPSERLRLIGVTGTNGKTTTTQLIAQWCQRLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   LS L++QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVMPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKFAATVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH   + Y  AK  LF         A+I ADD   +  + +  +A    + 
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLFS--AHHYGQAVINADDEVGRRWLAKLPDAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G  G+++    V        +  S    D +    L G F V N L+A G  +A+
Sbjct: 239 NNINPGCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALGTLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +LE   +L  V GR E   +      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLAALLESAPRLQPVNGRMEVF-SAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+EDP+ I A+I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPKAIIADILTGMLDAGRARVV 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI    + DV+++AGKGHE   IV         D      +LG +
Sbjct: 418 EGRAEAVTNAIMQAAENDVVLLAGKGHEDYQIVGTRRLDY-SDRVTAARLLGAV 470


>gi|170682313|ref|YP_001742207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
 gi|170520031|gb|ACB18209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
          Length = 495

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 255/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHR 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AII ADD   +  + +  +A        +++   G+++   +V    +   +  S
Sbjct: 234 CGQ--AIINADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|197251914|ref|YP_002145109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215617|gb|ACH53014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 495

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|296101248|ref|YP_003611394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055707|gb|ADF60445.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 495

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 166/505 (32%), Positives = 247/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E+  DSR   +G +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------NAPERALREMVLDSRVAASGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYNEPSDQLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +   +G               TT S + +   ++ L+
Sbjct: 114 VTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVSPTENTTGSAVDVQHVIAGLA 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  LF    
Sbjct: 174 GQGATFAAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLFS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  +
Sbjct: 232 HHYGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVEVNYHDSGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G   A +L   E+L  V GR E   +   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPMAELLNTAERLQPVCGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA   ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI    + DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D      +LG++
Sbjct: 471 YQIVGNRRLDY-SDRVTAARLLGVV 494


>gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 948

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 166/483 (34%), Positives = 244/483 (50%), Gaps = 10/483 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           + N L     +++  +   +S +S   +  +IF AI G K DG  FI  AI +GA  I+ 
Sbjct: 3   IGNFLKNIKKEFKNHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIIS 62

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
              +        I++    L   N RK LS  + +     P+N++AVTGT+GKSS+A F 
Sbjct: 63  EQKFE------GIKNKVLFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFY 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q+          IG     +  + +    TT  PI L+K L+ L  Q + +V +EASSH
Sbjct: 117 FQLLNLGNKKVASIGTLGVKTKNSLKKVSNTTLDPIKLSKILNNLKKQKIDNVIMEASSH 176

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q+RLDG+K     FTNL  DH+DYH+T   Y  +K+ LFE+LL      I  +    
Sbjct: 177 GLKQNRLDGLKFNTTIFTNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPE 236

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K + + + N    + ++      I +       +KQ V I    K +     L G+ Q+
Sbjct: 237 YKNLKRISLNNKLDLQALSKSNNGIDIYSHQFRDDKQIVEIKYNQKHYKLQINLIGKIQL 296

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N  +A        +    +++   K+  V GRFE +GT     ++ +DYAHT ++L+  
Sbjct: 297 KNLFMAMLAAKKSNLKFDQIVKLASKVKSVIGRFEKIGTLKNNSKVILDYAHTPDALKTC 356

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           L N++    + RI +VFGCGG+RD+ KRPIMGKIA    D   +TDDNPR E+P+KIR  
Sbjct: 357 LTNLKEQFENKRIFIVFGCGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLA 416

Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           I   I      E  +R +AI  AI  L   D+LV+AGKGHE      N   K S   +I+
Sbjct: 417 IKKTIDKSKVFEISSRSKAIHKAILDLKTGDILVIAGKGHEQTQDYGNFVNKFSDRLEIL 476

Query: 490 REI 492
           + I
Sbjct: 477 KNI 479



 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 138/384 (35%), Gaps = 29/384 (7%)

Query: 2   KLQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           KL++  L       ++ ++S  P      KI   S +S+ I+   IF AI GN +DG+L+
Sbjct: 480 KLKNKILSTNIKINILKEISNSPQINSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLY 539

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A   GA  ++ ++    +            +VVD+T + L+  +S+L       I++
Sbjct: 540 VNEAFQNGASLVIANNQKKSKKK----------IVVDDTLQLLTEASSKLRENLSSKIIS 589

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK+S+   + +   +    +         S  + +N+   P  +      +   +
Sbjct: 590 ITGSCGKTSLKELLGKTLSKISNVT--------YSPKSFNNKFGVPLSL-----FNLKKN 636

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +     G   +    IK   G  TN+   HI   +       AK  +   +  
Sbjct: 637 DEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFKNIHQVALAKSEIINNIKT 696

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                +   D  Y+                    +   I+L+K+    +K ++ ++V  K
Sbjct: 697 NGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLEKIVKEKSKYKIFVNVNKK 756

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F   L  E  + N L    +         L         +  GR + +        I
Sbjct: 757 QIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYEIAKGRGDIIKVKLNKKSI 816

Query: 359 YV---DYAHTSNSLEMILKNIRTI 379
           Y+    Y     SL+  +KN   +
Sbjct: 817 YIVDESYNSNPLSLKSAIKNFDEL 840


>gi|332095376|gb|EGJ00399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 495

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIDSHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VF CGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFSCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
 gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
          Length = 485

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 249/500 (49%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  ++     E+++          +  I ++S DSR ++   +F+ I GN  DGH +I
Sbjct: 1   MELLKILKDV--EILSVNGQV-----DIDIEDISYDSRKVKQNSMFLCIRGNTVDGHNYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA AI++    S +            + V+N ++ +++     +    + I  +
Sbjct: 54  DDAIQKGAIAILIDKKISYK-------KGITYIRVNNVKESMAIIGKNFFQNPCQKINLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTGT+GK+S  SF++QI                       +  TTP  + + K L+ + 
Sbjct: 107 GVTGTNGKTSTVSFIKQILGYDCKVGSIGTIEIYDGKKTITSINTTPESLDIQKNLNEMI 166

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                +  +E SSH L  +R+D I   A  FTNL +DH+D+H+T + Y NAK +LF +  
Sbjct: 167 KNNCKYCVMEVSSHALVLNRIDNIDYEAAVFTNLTQDHLDFHKTLENYKNAKEKLFYKTK 226

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEG 297
                     DD   +E   ++ N   +  + G  +        +    ++ +  + ++ 
Sbjct: 227 SINIF---NIDDKVGEEFFNKSLNRDIKTYTYGVEKEADFKAANIKLYDDRTEYDLIIDK 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + +    P+ G F VYN L A   CI +G+    V++ ++ L  V GR + V  N +   
Sbjct: 284 QKYKVSTPILGNFNVYNTLAAITTCILLGLSREDVIKRVQNLKSVSGRLDKV-ENDKNVN 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VDYAHT ++L  ILK+ R  T  RII+VFGCGG+RD+ KRPIMGKIA   ADI+I+T 
Sbjct: 343 IIVDYAHTPDALLNILKSARLFTKNRIILVFGCGGNRDKAKRPIMGKIAQQNADISIITS 402

Query: 418 DNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR E    I  +I+ GI      +    +R ++I+ AIE+    D++++AGKGHE   
Sbjct: 403 DNPRFEKEMDIIEDILCGIDKTLDNYFVVQDREDSIKKAIELYEVGDLIIIAGKGHENYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            +   +K    D  I ++IL
Sbjct: 463 -IKGDKKYFFDDKLIAKKIL 481


>gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Serratia proteamaculans 568]
 gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans
           568]
          Length = 495

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 250/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P               R + E++ DSR   AG +FVA+VG++ DG  FIP
Sbjct: 5   NLRDLLAPWVPT-----------APGRALREMTLDSRIAAAGDLFVAVVGHQADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A++  +    +D + T     P++ +    + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAVIAEAEGQAEDGAITEMHGVPVIYLSQLNQRLSALAGRFYHEPAERLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWGQLLGETSAVMGTVGNGLLGQVCPTENTTGSAVDIQHVLNELV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH     Y  AK  LF    
Sbjct: 174 DQGATLAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMANYEAAKWSLFAGHE 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQVTIS 294
             +  AII ADD   +  + +  +A    +      G  G+++    V    N   +  S
Sbjct: 234 VGQ--AIINADDEVGQRWLSQLPDAVAVTMQDNLQPGCHGRWLKTTAVNYHDNGATIHFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +++G   A ++    +L  V GR E       
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLSLGYPLAKLVATGNQLQPVCGRMEVF-NAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  VFGCGGDRD+GKRP+MG IA   AD  +
Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCLGQLWCVFGCGGDRDKGKRPLMGGIAEQFADRVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P+ I A+I+ G+      +    R EA+ +AI    +QDV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPQAIIADILTGLLDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             +V N       D   +  +LG++
Sbjct: 471 YQLVGNRRLDY-SDRTTVARLLGVV 494


>gi|16759118|ref|NP_454735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140668|ref|NP_804010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052854|ref|ZP_03345732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426160|ref|ZP_03358910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213621300|ref|ZP_03374083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213647636|ref|ZP_03377689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213852463|ref|ZP_03381995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|289823739|ref|ZP_06543351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|21362697|sp|Q8Z9H3|MURE_SALTI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331979|pir||AH0517 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501408|emb|CAD01280.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29136292|gb|AAO67859.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 495

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|194434409|ref|ZP_03066671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|194417325|gb|EDX33432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|320179647|gb|EFW54596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella boydii ATCC 9905]
          Length = 495

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIDSHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio
           fibrisolvens 16/4]
          Length = 490

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 136/502 (27%), Positives = 231/502 (46%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   EL            +++I+ +  DSR ++   +FV I G   D H FI
Sbjct: 1   MKLTTLLEELDYEL-------YAGELDKEISTLVYDSRKVEKDSVFVCISGTVRDAHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P  I +GA AI++       D           + V N+R+ L++ ++  +G   +    +
Sbjct: 54  PDVIEKGATAIIIEKDVEPVD-------GITYIKVANSRQALAILSAAYFGHPAKELKTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I +++G+ +  IG   +I          TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILEKAGIKTGLIGTIESIVGEERIPAVNTTPESYRVQELFRQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+  V +E SS  L  HR+ G     G FTNL  DHI      +          + L
Sbjct: 167 VDAGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGE---NEHKDFEDYMHCKSL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISV 295
           L ++    I+  D+   E + + H         G        +++ +             
Sbjct: 224 LFQQCKVGIFNGDSEHIEGILKGHTCDVIKYGYGKDNDLIAENVELLNENGALGVRYHIT 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +D      +PG F VYN+L A  +C    +    +   L  +HV  GR E V  +S  
Sbjct: 284 GKEDMTVEVNVPGTFSVYNSLTAVAICKQFNVAEDKIKSALMNVHV-KGRIELVPVSS-K 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +R  MG+++  LAD+ +V
Sbjct: 342 FTVMIDYAHNAMALESLLTTLKAYEPGRLVCLFGCGGNRAKSRRYEMGEVSSKLADLTVV 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR+E+P  I  +I+ G+      ++   +R EAIR  +    + D++V+AGKGHE 
Sbjct: 402 TSDNPRNEEPMDIINDILIGVKKADGEYVTVPDRKEAIRYCLTNAKEGDIIVLAGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    + ++I EI+
Sbjct: 462 YQEIK-GVKHHMDERELIAEII 482


>gi|167550682|ref|ZP_02344439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168262192|ref|ZP_02684165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324307|gb|EDZ12146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205348805|gb|EDZ35436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 495

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS223]
 gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS223]
          Length = 499

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 229/506 (45%), Gaps = 27/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+         Q             N+++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWLHYAGAQS-----------FNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPEN 116
            +A+  GA A++V +  + Q      R N      I V   +R+  ++ A R    H   
Sbjct: 51  EKALDLGAAAVLVHTDDADQHGKVLHRDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110

Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170
                 + +TGT+GK+S +  + Q+    G  +  +G           D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             LF           +           +K            G+Q    + K         
Sbjct: 231 QSLFRFSTLGHGLLNLDDTVGESWLTELKSVPAQMWGFSIEGHQAAAFYTKDAKFDDQGV 290

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             T+     + +   PL G F + N L A       G D   + E ++ L  V GR E  
Sbjct: 291 SATLVWPEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T      + VDYAHT +++E  L  +R    G +  VFGCGGDRD+GKRP+MG+ A   
Sbjct: 351 TTAK-NITLVVDYAHTPDAIEQALNALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAEQY 409

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++AG
Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAG 469

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KGHET      G +    +  + R++
Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494


>gi|153949506|ref|YP_001402349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186894039|ref|YP_001871151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|152961001|gb|ABS48462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186697065|gb|ACC87694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 495

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 166/493 (33%), Positives = 237/493 (48%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G               TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       A
Sbjct: 184 VSSHGLIQDRVAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A    +      G+ G ++   KV    N   +       + +   
Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +  G   A +L     L  V GR E          + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILG 494
              D   +  +LG
Sbjct: 481 Y-SDRVTVARLLG 492


>gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259104|gb|EDS73070.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
          Length = 481

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 151/500 (30%), Positives = 241/500 (48%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D++      L               IN +  DSR  + G +FV IVG + DGH +I
Sbjct: 1   MKLKDILEGYPHSL-----NGNKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  G + I  S            + +   +  +NTR  L+ FA+R Y    +   ++
Sbjct: 56  DSALKLGVKVICHSEELE------GYKDDITYIKCENTRNALAYFANRFYSFPSKNLKLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            V+GT+GK+S       + +  G  +  IG     ++  +   + TTP    L K  S +
Sbjct: 110 GVSGTNGKTSFCDIAHTLFENLGFKTDYIGTLGRKNTKLEGQIIRTTPEITELTKDFSDM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V +  +E SSHGL   R+  +    G F+NL  DH+D+H+T + Y+ AK +L+   
Sbjct: 170 VKNDVDYCFLEVSSHGLVLDRVSFLNFYIGVFSNLSMDHLDFHKTMEEYYQAKKKLY--- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVE 296
              +  ++I  DD Y   +          V+S G + +  +   +     +K   T++  
Sbjct: 227 YMVDRFSVINIDDDYGHRLYNELKEDKKDVISFGEKEQSDYKITIKELSLSKSSFTLTKG 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              +DF+    G+F +YN   A  + +  GI    + E + + H   GR E V  +    
Sbjct: 287 NNKYDFVINSIGKFNIYNVTPAIIIALEEGIGYEKIKEAILRYHGTNGRIERVAED---- 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I++DYAHT +++E ILK IR ++S +I +VFGCGG+RD GKRPIMG ++   AD  I+T
Sbjct: 343 -IFIDYAHTPDAMEKILKLIREVSSKKITLVFGCGGNRDHGKRPIMGSVSEKYADNIILT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR E  E I  +I++GI          +R EAI  A+      ++++V GKGHET  
Sbjct: 402 MDNPRKEKNEDIIKDILNGIKNKDKTEIIYDRKEAINKAVRNKKDDEIVLVLGKGHETYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            + + +K    D + I   L
Sbjct: 462 ELGD-KKIYFSDREEILNSL 480


>gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens
           200]
          Length = 500

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 146/507 (28%), Positives = 230/507 (45%), Gaps = 28/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F               ++  NE++ DSR I+ G +F+A+ G++ DG  FI
Sbjct: 2   MLLRDLLAPWFIY-----------SGDQSFNELTLDSRAIRRGDVFLALPGHRVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYG------ 111
            +A+  GA  ++V +  + Q     +  N      +      + +S  A++ Y       
Sbjct: 51  DKALDLGAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFA 110

Query: 112 -KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIY 169
                 I+ +TGT+GK+S +  + Q+    G  +  +G           D+  TT   I 
Sbjct: 111 VTPSLGIIGITGTNGKTSTSQLIAQLVTSLGRKAAVMGTLGNGLWGELVDSGNTTADAIT 170

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  A
Sbjct: 171 LMRQLHEFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYTAA 230

Query: 230 KMRLFEELLPKESPAIIYAD-DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           K  LF           +           +K            G+Q    + K        
Sbjct: 231 KQSLFRFSTLGHGLLNLDDPVGETWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDDQG 290

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              T+     +     PL G F + N L A       G D   + E ++ L  V GR E 
Sbjct: 291 VSATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMER 350

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             T      + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A  
Sbjct: 351 FTTAD-NITLVVDYAHTPDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAAEQ 409

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            AD  +VT DN RSEDP +I ++II G+      + + +RI AI+  + +    D++++A
Sbjct: 410 YADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLILLA 469

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKGHET      G +    +  + R++
Sbjct: 470 GKGHETYQE-AAGVRHNYDERALARQL 495


>gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 486

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 150/501 (29%), Positives = 231/501 (46%), Gaps = 33/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++Y+             +      I  V  DSR +    +FVA  G   DGH +I  
Sbjct: 4   LKDILYRVSIN-------KVIGNTNVAITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKN 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+ QGA AIV        +      +    + V N ++ L+  AS  Y    EN+  + V
Sbjct: 57  AVNQGAIAIVCE------ELPKDTVNGVTYVKVQNAQQALAFMASNFYENPSENLQLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++AS + Q+  ++G     +     +  +       TTP  + + K LS ++ 
Sbjct: 111 TGTNGKTTIASLLYQLYTKAGFKVGLLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTD 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G  +  +E SSHG+ QHR  G+K   G FTNL  DH+DYH T   Y + K + F+E LP
Sbjct: 171 IGCEYCFMEVSSHGIAQHRTTGLKFTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDE-LP 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + A+  ADD     +++                    + +        ++  +     
Sbjct: 230 SSAFALTNADDKNGMVMLQNTKAKKQTYALKSIADYKAQILENQFSGLLLKLNNNELWSK 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
               F        YN L        +G+ +   L  + +L  V GRF+++  N       
Sbjct: 290 LIGNFNA------YNLLAIFATTELLGMQTMESLRLISELESVNGRFQYLIKN--KITAI 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I  I +     I V GCGGDRD  KRP MG IA  L+   I T 
Sbjct: 342 VDYAHTPDALKNVLETINAIRTKNEELITVVGCGGDRDATKRPKMGHIASVLSTKVIFTS 401

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+EDP KI   I  G+        +   +R +AI+TA     + D++++AGKGHET 
Sbjct: 402 DNPRTEDPNKIIEAIESGVEPQHFKKTLSIADRKQAIKTACSFAKENDIILIAGKGHETY 461

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + NGE+    D  I++ +L
Sbjct: 462 QEI-NGERTDFDDFKIVKTLL 481


>gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [NC10
           bacterium 'Dutch sediment']
          Length = 504

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 160/507 (31%), Positives = 246/507 (48%), Gaps = 28/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DLI     +++           + +++E+  DSR ++ G +FV I G + DGH FI
Sbjct: 1   MQLFDLINGTEHQVLRGSV-------DLEVHEIRYDSRQVKPGDLFVCIGGFRRDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A A GA A +V       D +        ++ V NTR+ L+  A R YG    +  ++
Sbjct: 54  QAAWAAGAVAALVER----TDLTEAALQGGTVVKVANTRQSLAAVACRFYGHPSRSLSMV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    V+ + + +G     IG      +    +   TTP    L   L  +
Sbjct: 110 GVTGTNGKTTTTYLVESVLRCAGHQVGLIGTIGYRCNELELEAARTTPESCDLQALLERM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
           +      V +E SSH L  HR+DG +     FTNL +DH+D+H T +AY +AK+ +FE  
Sbjct: 170 ARLRADSVVMEVSSHALALHRVDGCEFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGL 229

Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                     A +   D  + ++         R          + +  V    +  +  +
Sbjct: 230 GVGSTKTTEKAAVVNLDDPAADLF-LGATRVRRYSYSVEGPADLSVADVKMGPDGIRCRL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                      PL G + + N L AA   + +G D + V + +  LH VPGR E V T  
Sbjct: 289 QTPWGTTAIRSPLLGRYNLSNILAAAATGLHLGADLSAVADGIAALHHVPGRCERVETGQ 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT ++L  +L+  R    GR+IV+FGCGG+RD+GKRP+MG+ AL+LAD  
Sbjct: 349 A-FSVMVDYAHTPDALRRVLRMARQCCPGRLIVLFGCGGERDRGKRPLMGEAALELADFT 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++T DNPR EDP +I  EI  G          ++   +R  AIR A+ +  + D++V+AG
Sbjct: 408 VITSDNPRGEDPHQIIEEIETGAKKVWGQGKGYVTILDRGMAIREALSLAGRGDMVVIAG 467

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHET  I+ +       D  + RE L
Sbjct: 468 KGHETYQILRD-RTIPFDDRLVAREAL 493


>gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
 gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
          Length = 495

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 242/505 (47%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P               R + +++ DSR   AG +F+A+ G+  DG  FIP
Sbjct: 5   NLRDLLAPWVP-----------GAPARPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  A++  +     D         P++ +    + LS  A R Y +  E +  + 
Sbjct: 54  QAIAQGVAAVIAEAEGEAIDGDIREIHGVPVIYLAQLPQRLSALAGRFYQQPAEKLKLIG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q     G +   +G               TT S + +   L  L 
Sbjct: 114 VTGTNGKTTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVATENTTGSAVDVQHVLHDLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH   Q+Y  AK  LF E  
Sbjct: 174 GQGATLAAMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQSYEAAKWLLFSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   AII ADD   +  + +  +A    +      G  G+++    V        +  S
Sbjct: 232 HQVGAAIINADDEVGRRWLAKLPDAVAVTMADNLQPGCHGRWLKATAVNYHDGGAHICFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +F   L G F V N L+A    +++      ++    +L  V GR E   +   
Sbjct: 292 SSWGDGEFDSRLMGAFNVSNLLLALATLLSLDYPLDALVSSATQLLPVTGRMEVF-SAPD 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R    G++  +FGCGGDRD+GKRP+MG IA   AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALEAARLHCKGQLWCLFGCGGDRDKGKRPLMGAIAEQFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPRSEDP+ I  +I+ G+           R +A+  AI     +D+++VAGKGHE 
Sbjct: 411 ITDDNPRSEDPQAIVNDILTGLLDPGRARVVAGRAQAVTNAIMQAKAEDIVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D D +  +LG++
Sbjct: 471 YQIVGNRRLDY-SDRDTVARLLGVM 494


>gi|168243462|ref|ZP_02668394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168820883|ref|ZP_02832883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194449143|ref|YP_002044093.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|238911180|ref|ZP_04655017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|194407447|gb|ACF67666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205337520|gb|EDZ24284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205342491|gb|EDZ29255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084366|emb|CBY94159.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 495

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
 gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
          Length = 491

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 144/501 (28%), Positives = 239/501 (47%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                          S + +   +        V         I  + +         T+ 
Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    +
Sbjct: 285 TPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A  AI
Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP+ I  ++++ +    +    +R EAIR+AI  +  +D++++AGKGHET 
Sbjct: 404 YTSDNPRSEDPKAILDDMVNDVNRDNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   E     D ++ +E +
Sbjct: 464 QIIG-KEVHHFDDREVAKEAI 483


>gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
 gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
          Length = 482

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 221/477 (46%), Gaps = 21/477 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
              +I  + +DSR ++ G +FV + G   D H F              +   +       
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I  + P+++V NT + L++ A   YG+    +  + +TGT+GK++ +  + +I +  G  
Sbjct: 61  IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD  R+ G 
Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRLFEELLPKESPAIIYADDAYSKEVMK 258
                 FTNL +DH+DYH+T + Y +A      +L            +   D    E   
Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R+  A      +      +  K +         T+    +  +    L G+F VYN L A
Sbjct: 241 RSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAA 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  G+    ++  +++L  VPGRFE V    +   + VDYAHT +SLE +LK  + 
Sbjct: 300 TAAGLVSGVKLQTIIAVIKELAGVPGRFEVV-DGGQNYTVIVDYAHTPDSLENVLKTAKQ 358

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G   
Sbjct: 359 FAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASG 418

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +    +R EAI  AI  +   D++++AGKGHET  I+   E     D ++ +E +
Sbjct: 419 NNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIG-KEVHHFDDREVAKEAI 474


>gi|333011473|gb|EGK30887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-272]
 gi|333021716|gb|EGK40965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 495

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 253/505 (50%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E      +
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAAGK 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 352 PT-VVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|22127505|ref|NP_670928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis KIM 10]
 gi|45443366|ref|NP_994905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809542|ref|YP_653458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|108810581|ref|YP_646348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|145600347|ref|YP_001164423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162419817|ref|YP_001607300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165928210|ref|ZP_02224042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937753|ref|ZP_02226314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008992|ref|ZP_02229890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212163|ref|ZP_02238198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401238|ref|ZP_02306738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421898|ref|ZP_02313651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426477|ref|ZP_02318230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229837059|ref|ZP_04457224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229840438|ref|ZP_04460597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843020|ref|ZP_04463170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900773|ref|ZP_04515897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270487857|ref|ZP_06204931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294502638|ref|YP_003566700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|21960603|gb|AAM87179.1|AE013965_6 meso-diaminopimelate-adding enzyme [Yersinia pestis KIM 10]
 gi|45438235|gb|AAS63782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108774229|gb|ABG16748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|108781455|gb|ABG15513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|145212043|gb|ABP41450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162352632|gb|ABX86580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165914165|gb|EDR32781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919821|gb|EDR37122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992331|gb|EDR44632.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206909|gb|EDR51389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960035|gb|EDR56056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049263|gb|EDR60671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054575|gb|EDR64383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682112|gb|EEO78204.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229689896|gb|EEO81955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696804|gb|EEO86851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706002|gb|EEO92011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262360668|gb|ACY57389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D106004]
 gi|270336361|gb|EFA47138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294353097|gb|ADE63438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|320016916|gb|ADW00488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 495

 Score =  309 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 166/493 (33%), Positives = 237/493 (48%), Gaps = 14/493 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G +S  +G               TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       A
Sbjct: 184 VSSHGLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +   A    +      G+ G ++   KV    N   +       + +   
Sbjct: 242 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F V N LVA    +  G   A +L     L  V GR E          + VDYAH
Sbjct: 302 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N    
Sbjct: 421 PQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILG 494
              D   +  +LG
Sbjct: 481 Y-SDRVTVARLLG 492


>gi|323950919|gb|EGB46796.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H252]
          Length = 495

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L  L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELVGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 482

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 221/477 (46%), Gaps = 21/477 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
              +I  + +DSR ++ G +FV + G   D H F              +   +       
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDF---------AKQAAAQGAAAIVAERP 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
           I  + P+++V NT + L++ A   YG+    +  + +TGT+GK++ +  + +I +  G  
Sbjct: 61  IDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHK 120

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG  +  I     + + TTP  + L +  S +  QGV    +E SSH LD  R+ G 
Sbjct: 121 TGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGC 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRLFEELLPKESPAIIYADDAYSKEVMK 258
                 FTNL +DH+DYH+T + Y +A      +L            +   D    E   
Sbjct: 181 DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYM 240

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R+  A      +      +  K +         T+    +  +    L G+F VYN L A
Sbjct: 241 RSTAATVVTYGIDTTSDIM-AKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAA 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  G+    ++  +++L  VPGRFE V    +   + VDYAHT +SLE +LK  + 
Sbjct: 300 TAAGLVSGVKLQTIIAVIKELAGVPGRFEVV-DGGQNYTVIVDYAHTPDSLENVLKTAKQ 358

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              G +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G   
Sbjct: 359 FAKGDVYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASG 418

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +    +R EAI  AI  +   D++++AGKGHET  I+   E     D ++ +E +
Sbjct: 419 NNYEVIIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIG-KEVHHFDDREVAKEAI 474


>gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
 gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
          Length = 492

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 153/507 (30%), Positives = 236/507 (46%), Gaps = 25/507 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+         +             N +S DSR I AG +F+A+ G+  DG  FI
Sbjct: 1   MRLSDLLAPWLHYSGPES-----------FNNISLDSRAITAGDLFIAVPGHLVDGRKFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFAS--RLYGKHPENI 117
             A  QGA A +V S    +     +  + +P ++     + LS   +     G H   +
Sbjct: 50  GVAFEQGAVAALVHSDDPAEHGRLKLEQTGSPQVLFFQLSQHLSAIGAQAYPLGAHRLKL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S+   + Q+    G  +  +G           D+  TT  PI ++  L  
Sbjct: 110 IGVTGTNGKTSITQLMAQLVALLGKQASLMGTLGNGLWGDLVDSGNTTADPITISAQLQA 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +  G    ++E SSHGL Q R++ +      FTNL RDH+DYH T QAY +AK RLF+ 
Sbjct: 170 FNLAGADLCAMEVSSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKF 229

Query: 237 LLPKESPAIIYADDAYSKEVMKRAH---NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +     +  DD   ++ +       + G  + S       I+             T+
Sbjct: 230 TSLQSGLINL--DDEVGRQWLSEEQSAKHIGFSICSAYADAASIYTLDNHQHDQGVTATL 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                      PL G F + N + A G    IG D   +   + +L  V GR E   T  
Sbjct: 288 VWPEGQAKLASPLLGYFNLSNLVAALGALYLIGYDMRAMAASVPQLKSVAGRMERF-TTD 346

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  + VDYAHT +++E  LK +R    G++  +FGCGGDRD+GKRP+M + A   AD  
Sbjct: 347 NGVTLVVDYAHTPDAIEQALKALRGHCEGQLWCLFGCGGDRDKGKRPLMAQAAEAYADKV 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSE PE I  EI+ G+      + + +R +AIR  + +    D++++AGKGHE
Sbjct: 407 MVTSDNARSESPEVIIEEILAGLDAPERVLTQVSREKAIRQVVALAKPGDLILLAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
           T   +  GE+    +  + + + G  +
Sbjct: 467 TYQEIA-GERLDYDERALAKSLAGERI 492


>gi|218687962|ref|YP_002396174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ED1a]
 gi|218425526|emb|CAR06309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli ED1a]
          Length = 495

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNEPLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--A 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii ATCC 27126]
          Length = 521

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 148/511 (28%), Positives = 228/511 (44%), Gaps = 31/511 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              +   L+ F +   + +I  ++ DSR +     F+AI G++ DG  FIPQAI+ GA  
Sbjct: 7   IQSIKALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARV 66

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           I+  +  S       +R ++ I+ +    + LS  A+  Y    + +  +AVTGT+GK+S
Sbjct: 67  ILAQTEDSSAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTS 126

Query: 129 VASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
               + Q+    G  S  IG                     TTP  I +   L+      
Sbjct: 127 TVQLLTQLKDALGTRSASIGTLGSSVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSE 186

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V H + EASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L ++   K 
Sbjct: 187 VRHTAFEASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQPGLKA 246

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCR-----------------VLSVGYQGKFIHLKKVCA 284
               +  D++   +                                  Q +         
Sbjct: 247 VVLNVNDDESKKWDGAADKSITRIWTGIDESGLDGSGESECLREHNNPQSRHCFATNASY 306

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   +           PL G+F + N L A G  +A G     V+  +  +  VPG
Sbjct: 307 HAGGCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITPVPG 366

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E          + VDYAHT ++LE +L + +  T+G++  VFGCGGDRD+GKRP+MG+
Sbjct: 367 RMEVFPVTGA-ANLVVDYAHTPDALEKVLLSAKFHTTGKVWCVFGCGGDRDKGKRPLMGQ 425

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDV 461
            A   AD  ++T DN RSE PE I  +II G+      +   +R +AIR  +E  ++ D+
Sbjct: 426 AAEVGADAIVITTDNSRSESPESIAEDIIAGLKNRELAVSIPDREQAIRHCLEHAHESDI 485

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++VAGKGHE   I+ + +K    +  ++  +
Sbjct: 486 IIVAGKGHEDYQIIGD-KKTNYNERAVVARL 515


>gi|200389058|ref|ZP_03215670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199606156|gb|EDZ04701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 495

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEAADGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 544

 Score =  309 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 154/495 (31%), Positives = 221/495 (44%), Gaps = 41/495 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ ++ DSR +Q G++F  + G K DGH F   A+ +GA A+VV            + 
Sbjct: 56  QKISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALVVER---------YVD 106

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSF 145
            +   + V +TRK ++  A   YG     +L V  T           V+ I    G    
Sbjct: 107 VDALQIRVPSTRKSMAQAARVFYGSPSSRMLMVGVTGTNGKTTTTHLVEAILVAQGRRVG 166

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG         A   + TTP  + L   L+ ++ +G   V +E SSH LDQ R+ G+  
Sbjct: 167 LIGTNGNRLGDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHALDQLRVLGVDF 226

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---------------------- 242
               FTNL +DH+DYH+T + Y +AK  LF  L  +                        
Sbjct: 227 DLALFTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPGSAPEATTLQGVPK 286

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AII ADD  +   +  +                     V          +   G +   
Sbjct: 287 RAIINADDPNAGFFIAASAAPVITYGIEADAMIKGRDWAVTPHGL--TCDVLYPGGEVRL 344

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F + NAL A     A+GID   +   L  +  V GRFE +        + VDY
Sbjct: 345 NLQLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAGRFERIDLGQ-PFSVIVDY 403

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT + LE +L   R +  GR+I VFGCGGDRD+ KRP MG +   L+D+AIVT DNPR+
Sbjct: 404 AHTPDGLENVLVTARALARGRVITVFGCGGDRDRTKRPKMGAVVARLSDVAIVTSDNPRT 463

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP +I  +I+ G+        + +R  AI  A+ +    D++++AGKGHE+  IV    
Sbjct: 464 EDPRRIIEDILPGLADAGDVHVEPDRSSAIALALSLAQPGDLVMIAGKGHESYQIVGA-R 522

Query: 480 KKMSVDCDIIREILG 494
                D  I RE L 
Sbjct: 523 VLPFDDRQIARERLR 537


>gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
          Length = 483

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 231/488 (47%), Gaps = 19/488 (3%)

Query: 8   YKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            K   +++  L    +Q  E  I   +  DSR I  G IF+A+ G+  DGH FI  AI +
Sbjct: 2   SKFMDKILEGLEYKVLQEPETNIFTGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  + VS   S Q            +++ N RK L + AS  Y    + +  +  T   
Sbjct: 62  GARLVFVSKEVSCQ-------QGIGYILIKNLRKHLGVLASNFYDWPQKKMKILGVTGTN 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
               +              + G     I     +   TTP  + L K +     QG+ ++
Sbjct: 115 GKTTTTYLLEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLIKMIKKAHDQGLEYI 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L+  R++ ++     FTNL  DH+DYH+T + YF AK +LF + L  +   I
Sbjct: 175 VMEVSSHALELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLK-LRGKGIKI 233

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD+Y K + +  H         G     +  K +     ++++ +S+ G   +    
Sbjct: 234 FNIDDSYGKRLWEEFHGVS-----YGMNKADVQGKILAFEGGREEIELSLFGNKKECKIQ 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G F +YN L +  L   +G+    +   L  L   PGRFE +        + +DYAHT
Sbjct: 289 ILGGFNLYNLLGSLALVKELGMSDEDIFSKLGNLKGAPGRFETLDCGQ-DYMVIIDYAHT 347

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE IL+ ++ I SG+II +FGCGGDRD  KRPIM +IA   +D  ++T DNPR+E+P
Sbjct: 348 GDALENILQAVQEIKSGKIITIFGCGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRTENP 407

Query: 426 EKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           E I  E+  G      I    R EAI   I   NK D++++AGKGHET  I+   +K   
Sbjct: 408 ESILEEVKSGFTKENHICILERAEAIAEGIRRANKGDMVLIAGKGHETYQILGR-KKYHF 466

Query: 484 VDCDIIRE 491
            D +  R 
Sbjct: 467 DDREFARR 474


>gi|161612467|ref|YP_001586432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168464325|ref|ZP_02698228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|198245705|ref|YP_002214075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351462|ref|YP_002225263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207855637|ref|YP_002242288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|161361831|gb|ABX65599.1| hypothetical protein SPAB_00157 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195633022|gb|EDX51476.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197940221|gb|ACH77554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271243|emb|CAR36031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206707440|emb|CAR31713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626489|gb|EGE32832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 495

 Score =  309 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 168/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|16128078|ref|NP_414627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89106968|ref|AP_000748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K-12 substr. W3110]
 gi|170079724|ref|YP_001729044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899486|ref|YP_002925282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|127538|sp|P22188|MURE_ECOLI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|581032|emb|CAA38862.1| UDP-MurNac-tripeptide synthetase (MurE) [Escherichia coli]
 gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|21321966|dbj|BAB96653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K12 substr. W3110]
 gi|169887559|gb|ACB01266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863753|gb|ACR65751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450708|gb|ACX41130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli DH1]
 gi|315134779|dbj|BAJ41938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli DH1]
          Length = 495

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
          Length = 477

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 149/481 (30%), Positives = 237/481 (49%), Gaps = 25/481 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               +  I+++  DSR I+   +FVAI G   +GH +I +A++ GA AI+        + 
Sbjct: 7   HGTTDIAISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGAIAIICE------EL 60

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
            + I +    + V +T + L+  ++  +        ++ VTGT+GK+++AS + Q+ +++
Sbjct: 61  PSNIVNGVTYIKVKDTNEALAFLSANYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKA 120

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G     +     +  +       TTP  + L   L  +   G     +E SSHG+ Q R 
Sbjct: 121 GYKVGLLSTVKIMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKRT 180

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + ++ + G FTNL  DH+DYH T   Y + K   F + L K++ AI   DD     +++ 
Sbjct: 181 EALQFVGGVFTNLSHDHLDYHNTFAEYRDVKK-SFFDGLSKDAFAITNIDDKNGAIMLQN 239

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                       Y      + +           + ++  D +    L G F  YN L   
Sbjct: 240 TKAKKLSYALKSYADYKAQILENQLSG------LLLKINDNEVWVKLIGSFNAYNLLAIY 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+ + +GID    L  L +L  V GRF+F+  +       VDYAHT ++LE +LK I  I
Sbjct: 294 GVAVELGIDKMEALRLLSELESVSGRFQFI-VSDLKITAIVDYAHTPDALENVLKTIEDI 352

Query: 380 TSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
            +     I V GCGGDRD+ KRPIM  IA  L+D AI T DNPR+E+PE I  E+  G+ 
Sbjct: 353 RTKNEQLITVVGCGGDRDKTKRPIMANIASSLSDKAIFTSDNPRTENPETIIEEMEKGVE 412

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                  +   +R +AI+TA ++ N  D++++AGKGHET   + NG +    D  II E+
Sbjct: 413 PQNFKKTVSILDRKQAIKTACQLANPNDIILIAGKGHETYQEI-NGLRHDFDDLKIITEL 471

Query: 493 L 493
           L
Sbjct: 472 L 472


>gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36]
 gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36]
          Length = 503

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 142/473 (30%), Positives = 220/473 (46%), Gaps = 8/473 (1%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +N +  DSR +QAG  FVAI G+  DG  FI +A+  GA A++  +    +      
Sbjct: 29  ELVVNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGATAVLKDADNEAEHGHIDY 88

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               PI+      + LS  A   Y    +   ++ VTGT+GKS++   +          +
Sbjct: 89  IDQRPIISFFGLNQALSALADNFYQSPSQQLKLIGVTGTNGKSTITQIIANWVTLLAGKA 148

Query: 145 FQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G               TT S + +   ++    QG    ++E SSHGL Q R++ + 
Sbjct: 149 GVMGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGAELCAMEVSSHGLIQGRVNALD 208

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH    AY +AK  LF+  +  +   +  A      +    A   
Sbjct: 209 FDVALFTNLTRDHLDYHGDMDAYADAKKILFQGAVKHKILNVDDAYGKMWAQQWSDAIQF 268

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R     + G F++  ++          +     D      L GEF   N + A    +
Sbjct: 269 SVRQDLSAHHGAFLYCNELSFDTGGFSCELKTSWGDGTLQCSLIGEFNASNVVAACASLL 328

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G D   +L    KL  V GR E      +     VDYAHT ++LE  L+ +R    G+
Sbjct: 329 ALGYDLDDLLRVAPKLTAVCGRMELFKQAGQAAC-VVDYAHTPDALEKALQALRVHCEGK 387

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FI 440
           +  ++GCGGDRD GKRP+M ++A   AD+A++TDDNPR+E    I  ++++G+       
Sbjct: 388 LWCIYGCGGDRDTGKRPLMAQVAEQFADMAVITDDNPRTESAAAIVTDMLNGLAKPDAAH 447

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R  AI+ A+E  +  D+++VAGKGHE   I+   EK    D + I E+L
Sbjct: 448 VIHDRRRAIQWAMEQSSADDIILVAGKGHEDYQIIG-VEKHHYSDRETITEML 499


>gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
 gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
          Length = 491

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 144/501 (28%), Positives = 239/501 (47%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y +AK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                          S + +   +        V         I  + +         T+ 
Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    +
Sbjct: 285 TPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A  AI
Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP+ I  ++++ +    +    +R EAIR+AI  +  +D++++AGKGHET 
Sbjct: 404 YTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   E     D ++ +E +
Sbjct: 464 QIIG-KEVHHFDDREVAKEAI 483


>gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus weihenstephanensis KBAB4]
 gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           weihenstephanensis KBAB4]
          Length = 491

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 145/501 (28%), Positives = 239/501 (47%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR ++ G +F+ + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPTE--NPEITSIEADSRKVKEGSLFICMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V NT + L++ A   YG+    +  +
Sbjct: 53  --------AKQAAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I     + + TTP  + L +  S +
Sbjct: 105 GITGTNGKTTTSHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSH LD  R+ G       FTNL +DH+DYH+T + Y NAK  LF +L
Sbjct: 165 VEQGVDSTVMEVSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC---RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                          S + +   +        V         I  + +         T+ 
Sbjct: 225 GNSYHHNREKYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +    L G+F VYN L A    +  G+    +++ +++L  VPGRFE V    +
Sbjct: 285 TPYETVNVTMKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +LK  +    G +  + GCGGDRD+ KRPIM  +A + A  AI
Sbjct: 344 NYTVIVDYAHTPDSLENVLKTAKQFAKGDVYCIVGCGGDRDRTKRPIMASVATEYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNPRSEDP+ I  ++++ +    +    +R EAIR+AI  +  +D++++AGKGHET 
Sbjct: 404 YTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   E     D ++ +E +
Sbjct: 464 QIIG-KEVHHFDDREVAKEAI 483


>gi|167469519|ref|ZP_02334223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis FV-1]
          Length = 478

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 165/479 (34%), Positives = 232/479 (48%), Gaps = 14/479 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +     D S  
Sbjct: 1   PERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVA 60

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
                P++ + N  + LS  A + Y +      ++ VTGT+GK++    + Q  Q  G +
Sbjct: 61  EIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGET 120

Query: 144 SFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G               TT S + +   L  L  QG T  ++E SSHGL Q R+  +
Sbjct: 121 SAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVAAL 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A  FTNL RDH+DYH    +Y  AK  LF     +       ADD   +  + +   
Sbjct: 181 SFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--ADDDVGRRWLSQLPQ 238

Query: 263 AGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A    +      G+ G ++   KV    N   +       + +    L G F V N LVA
Sbjct: 239 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 298

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  G   A +L     L  V GR E          + VDYAHT ++LE  L   R 
Sbjct: 299 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDALEKALAAARL 357

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
             +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I A+I+ G+  
Sbjct: 358 HCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVADILSGLLD 417

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                    R EA+ +AI    + DV+++AGKGHE   +V N       D   +  +LG
Sbjct: 418 AGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SDRVTVARLLG 475


>gi|51595033|ref|YP_069224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|51588315|emb|CAH19923.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
          Length = 490

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 165/489 (33%), Positives = 236/489 (48%), Gaps = 14/489 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +
Sbjct: 3   DLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
                D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++    +
Sbjct: 63  DGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +S  +G               TT S + +   L  L  QG T  ++E SSH
Sbjct: 123 AQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       ADD  
Sbjct: 183 GLIQDRVAALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--ADDDV 240

Query: 253 SKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  + +   A    +      G+ G ++   KV    N   +       + +    L G
Sbjct: 241 GRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N LVA    +  G   A +L     L  V GR E          + VDYAHT ++
Sbjct: 301 AFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I
Sbjct: 360 LEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 419

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N       D
Sbjct: 420 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SD 478

Query: 486 CDIIREILG 494
              +  +LG
Sbjct: 479 RVTVARLLG 487


>gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 524

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 155/489 (31%), Positives = 227/489 (46%), Gaps = 34/489 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ DSR ++ G  F+A  G K DG  FIP AI +GA A+V        D         P
Sbjct: 34  HLAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVVWERDGFAWDPEWKT----P 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V + +      A  LY    + +  + VTGT+GK+S + ++ Q        +  IG 
Sbjct: 90  NLPVPDLKSEAGFIADYLYDHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAAVIGT 149

Query: 150 TSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                    +    TTP  + L   ++    +G   V++E SSHG+ Q R++G       
Sbjct: 150 LGAGFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGATFAVAM 209

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TNL RDH+DYH T + Y  AK RLF         A++  DD +  +++      G  ++
Sbjct: 210 LTNLSRDHLDYHGTMEVYAAAKARLFHW--RGLKYAVLNLDDVFGMQLLHDLEGTGTGMI 267

Query: 269 SVGYQGK-----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             G+               +  + + A     +  I  EG+   F   + G F   N L 
Sbjct: 268 GYGFTDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFNASNLLG 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                +A GI     +  L+K+  V GR + +G       I VDYAHT ++LE +L  +R
Sbjct: 328 VLATLLASGIAFPEAVRALQKVQPVAGRMQQIGGEGDEPLIVVDYAHTPDALEKVLTTLR 387

Query: 378 TITS------------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
                           GR++ VFGCGG+RDQGKRP+MG++A  LAD AI+T DNPRSEDP
Sbjct: 388 EAVDAGFPGGKPETGSGRLVCVFGCGGERDQGKRPLMGEVATRLADEAIITSDNPRSEDP 447

Query: 426 EKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           + I   I  G         +R  AI  AI   +K DV+++AGKGHET      G+K    
Sbjct: 448 DSIIRGIAVGAAANHRIEKDRAAAIHRAIRGTHKGDVVLIAGKGHETWQE-AGGKKFPFS 506

Query: 485 DCDIIREIL 493
           D ++ R+ L
Sbjct: 507 DAEVARKAL 515


>gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
 gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
          Length = 508

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 148/483 (30%), Positives = 224/483 (46%), Gaps = 23/483 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  + +DSR I+ G  F+A  G+  DG+ FIPQAIA GA A++       ++F     
Sbjct: 21  VEIKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVLYDP----RNFVWKSE 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L VD+ +    L AS +Y    +   ++ +TGT+GK+S + +  Q     G  + 
Sbjct: 77  WRIPALAVDDLKMKAGLIASYVYDHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTA 136

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G   +      Q    TTP    L ++      +G  +V +E SSHGL Q R  G   
Sbjct: 137 VLGTLGSGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-------ADDAYSKEVM 257
                TNL RDH+DYHQ   AY  AK  LF     K +   +        +    +K + 
Sbjct: 197 SVALLTNLSRDHLDYHQDMDAYAAAKSSLFFWPGLKYAVVNMDDVLGVELSRQLVTKPIK 256

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +           Q K +H   +    +  +  I  E         L G+F   N L 
Sbjct: 257 MMGYGFRYPENRDSKQFKMVHGSNLKFDIHGMEFDIEFEDSHEHLRIGLLGKFNASNLLA 316

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                +A GI     +  L+ +  +PGR E          I VDYAHT ++LE +L  +R
Sbjct: 317 VVAALLASGIRLPDAVGSLQSVQSIPGRMEKY-YGINQSTIIVDYAHTPDALEKVLCTLR 375

Query: 378 TI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +      + R+  V GCGGDRD+GKR ++G++A  LAD  I T DNPRSEDP +I  +I
Sbjct: 376 ELLRIEGRNARLFCVVGCGGDRDRGKRAMVGEVATRLADEVIFTSDNPRSEDPLRIIEDI 435

Query: 433 IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
             G     +  + +R  AI  AI      D++++AGKGHE    +  G+K    D ++++
Sbjct: 436 AAGAVEGNYQVEVDRALAIYQAIANARSNDIVLIAGKGHEKFQEIK-GQKISFSDAEVVQ 494

Query: 491 EIL 493
           ++L
Sbjct: 495 QVL 497


>gi|110804149|ref|YP_687669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613697|gb|ABF02364.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 5 str. 8401]
          Length = 495

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 171/503 (33%), Positives = 251/503 (49%), Gaps = 25/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             IV N       D   +  +LG
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLG 492


>gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
 gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
          Length = 507

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 155/502 (30%), Positives = 239/502 (47%), Gaps = 23/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+ +        + +      +  I+ +  DSR + +G +FV  +G   DGH F+
Sbjct: 1   MTLTELLDE-----AKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           PQA  QGA  IV +    + +          +++V +T   LS  A   YG+  E+  ++
Sbjct: 56  PQAAEQGAVVIVATKEVEIGESVKA------VVIVSDTNSILSALAGAFYGRPSESLAVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176
            +TGT+GK++ +  ++ I +  GL +  IG  S        QD   TTP  +YL K ++ 
Sbjct: 110 GITGTNGKTTTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMAT 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +         +E SSH L Q R   I      FTNL RDH+DYH+ + +Y  AK +LF  
Sbjct: 170 MVHNRTEVCVMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFAS 229

Query: 237 LLPK-ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           ++       ++  DD  +   +   +     V     +   +H   +     +  V +  
Sbjct: 230 MVDPARHRKVVNIDDPNAGYFVSLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              + +    L G   VYN L A  + IA+      ++  +E++  VPGR E V    + 
Sbjct: 290 PRGNIEISSGLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELV-DEEQP 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++L  +L  +R     RII V GCGGDRD+GKRP+M KIA   +++ I 
Sbjct: 349 FAVIVDYAHTPDALSRLLDTVRECGPRRIITVVGCGGDRDRGKRPVMAKIAAAKSEVCIF 408

Query: 416 TDDNPRSEDPEKIRAE----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPRSEDP K        I +G         R  A+R A+ M  + D +V+AGKGHE 
Sbjct: 409 TSDNPRSEDPRKFERSYYPPIWNG-NRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKGHEK 467

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+   E+K   D +  RE L
Sbjct: 468 YQIIG-KERKYHDDREECREAL 488


>gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 487

 Score =  308 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 231/476 (48%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF           +  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPNLNCRVINL--DDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGLKQESRLITYSQLDSAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G            R +AI   I      DV+V+AGKGHE    + +G+++   D
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHEDYQEI-DGKRQPFSD 471


>gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 502

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 150/498 (30%), Positives = 241/498 (48%), Gaps = 17/498 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F + +  +        + ++  V  DSR +  G +FVA+ G   DG+ +I  AI +GA A
Sbjct: 3   FSQALAGVDTTARSGPDPELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKGAGA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+  SA ++   + ++R++  I  V + R+ ++L A+  +G HPE  LAV+G +G +   
Sbjct: 63  ILTDSAEAMA--TWSLRTDVAIAQVPHGRQAMALVAANFFG-HPERQLAVSGVTGTNGKT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +      +  +     TI          +  TTP    L          GVT   
Sbjct: 120 TTTFLLESLLQHAQRKTALVGTIEYHLAGQVLPSPHTTPESRDLLALFRQGVDAGVTEAV 179

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R+ GI      FTNL RDH+D+H + Q YF AK  LF+  L +     +
Sbjct: 180 MEVSSHALAQGRVYGIPYDVAIFTNLTRDHLDFHGSMQQYFAAKRMLFDASLGQPPRVSV 239

Query: 247 YA-DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              +D +  E+   A   G  + S G+       + V       +               
Sbjct: 240 LNLEDPHGAELALTAREHGSEIYSYGFNTGEFRAEDVQLSGGGMRFHWHTPFGHAPVTTR 299

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   VYN L A+   +A G+    V+E +  LH VPGRF+      +   + VDYAHT
Sbjct: 300 LIGRVNVYNLLAASAGALARGLAFDQVVESVAHLHSVPGRFQ-TIDEGQPFTVVVDYAHT 358

Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++L  ++   R +     GR+I +FGCGGDRD+ KRP+MG+ A + +D+ ++T DNPRS
Sbjct: 359 DDALRNLIALARDLVHKHKGRVITLFGCGGDRDRTKRPLMGQAAAEGSDVVVLTSDNPRS 418

Query: 423 EDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           EDPE I A+++ G+      ++ + +R   IR A+E+    D++++AGKGHE    + +G
Sbjct: 419 EDPEAILADVLPGLTVPRTWYMLEPDRARGIRMALEIAQPGDIVLLAGKGHEKTQTLRHG 478

Query: 479 EKKMSVDCDIIREILGLI 496
                 D  +   +L  +
Sbjct: 479 T-IPFDDVAVAAAVLREM 495


>gi|307551929|gb|ADN44704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli ABU 83972]
          Length = 490

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 168/491 (34%), Positives = 247/491 (50%), Gaps = 14/491 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +
Sbjct: 3   DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
                D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++    +
Sbjct: 63  KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G  S  +G               TT S + +   L+ L  QG T  ++E SSH
Sbjct: 123 AQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+         AII ADD  
Sbjct: 183 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEV 240

Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  + +  +A        ++    G+++    V    +   +  S    D +    L G
Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+A    +A+G   A +L+   +L  V GR E   T      + VDYAHT ++
Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I
Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419

Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N       D
Sbjct: 420 INDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SD 478

Query: 486 CDIIREILGLI 496
              +  +LG+I
Sbjct: 479 RVTVARLLGVI 489


>gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 491

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 129/501 (25%), Positives = 227/501 (45%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ K     +           ++++  V  DSR ++ G +F+ I G   DGH F+
Sbjct: 7   MKLISLLEKLEYTCLQGS-------TDQEVKNVVYDSRKVEEGSLFICIRGAVVDGHKFV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  +A+GA+ ++V  A    +       +  +++V +TR  ++  ++  +G   E +  +
Sbjct: 60  PDVVAKGAKVLIVEEAVEAPE-------DVTVILVKDTRYAMAFISAAYFGYPAEKLKTI 112

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +           G     IG   + I       + TTP    + +    +
Sbjct: 113 GITGTKGKTTTTYMVKSILENAGYKVGLIGTIEAIIGDKVIPAKNTTPESYVIQEYFHEM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G   V +E SS GL  HR  G     G FTN+  DHI  ++ +       +R    L
Sbjct: 173 AEAGCDCVVMEVSSQGLMLHRTQGFVFDFGIFTNIEPDHIGPNEHKDFDDY--LRCKSLL 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L +    I+  DD + +++++    +                 K+        ++  ++G
Sbjct: 231 LKQCKVGIVNRDDEHFEKIIEGHTCSLETYGFSPEADLRAEDAKLVGGKGYLGISYHLKG 290

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             DF     +PG+F +YN+L A  +C    +     +    K+  V GR E V  +    
Sbjct: 291 LLDFHVEIDIPGKFSIYNSLTAIAICRHFKVS-EENILKALKVAKVKGRIEMVKVSD-DF 348

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + +LE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T
Sbjct: 349 TLMIDYAHNAMALESLLTTLKEYHPHRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTIIT 408

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR E+P+ I  +I  G+      ++E  +R EAI  AI      D++V+AGKGHE  
Sbjct: 409 SDNPRDEEPQAIIDDIKIGMAKTDGKYVEIPDRKEAIAYAIHHGEPGDIIVLAGKGHEDY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  G+K    +  +I +IL
Sbjct: 469 QEIK-GKKYPMDERVLIADIL 488


>gi|194443335|ref|YP_002039355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194401998|gb|ACF62220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 495

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 168/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|24111530|ref|NP_706040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 301]
 gi|30061652|ref|NP_835823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 2457T]
 gi|46577006|sp|Q83MG0|MURE_SHIFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24050288|gb|AAN41747.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039894|gb|AAP15628.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str.
           2457T]
 gi|281599447|gb|ADA72431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Shigella flexneri 2002017]
 gi|332762354|gb|EGJ92621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333010581|gb|EGK30014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri VA-6]
 gi|333022338|gb|EGK41576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-304]
          Length = 495

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGGI 494


>gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 487

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 231/476 (48%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF           +  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPNLNCRVINL--DDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGLKQESRLITYSQLDGAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G            R +AI   I      DV+V+AGKGHE    + +G+++   D
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKGHEDYQEI-DGKRQPFSD 471


>gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
 gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
          Length = 519

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 158/495 (31%), Positives = 240/495 (48%), Gaps = 21/495 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+ +  P             RER+I+ +S DSR +  G +F A  G ++ GH +I  
Sbjct: 22  LSDLLAEWVP---------IGAVRERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGA 72

Query: 63  AIAQGAEAIVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           A+ QGA AIV       S    +     N P++ + +    L + A+R Y +       L
Sbjct: 73  AVNQGAAAIVYDPVIPVSPVIQTQLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVL 132

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV+ F+ Q   R  +    IG          Q + LTTP  I + + L+ +
Sbjct: 133 GVTGTNGKTSVSHFLAQALHRQEVPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAM 192

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +    +  +E SSH L Q R+ G+      FTNL R+H+DYH     Y  AK RLF + 
Sbjct: 193 VASKARYAVLEVSSHALGQGRVSGVAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQP 252

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             + +        A    +             +      +H  K+    +   +TI    
Sbjct: 253 GLRHAVINGDDA-AGRAFLANLPPEVKAISYGLMNPQASLHTGKLRCDRHGIAMTIQSAW 311

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     PL G F  YN L A G  +A+G+     L+ L ++  V GR E +G       
Sbjct: 312 GEGQLTCPLLGRFNAYNLLAALGGLLAVGMPFTEALQRLSQVRAVVGRMESLGGEEGEPL 371

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VDYAHT ++LE +L+++R      GR+  VFGCGG+RD+GKRP+MG  A  LAD  ++
Sbjct: 372 LVVDYAHTPDALEQVLRSLRAHLGPGGRLWCVFGCGGNRDRGKRPLMGAAAERLADFVML 431

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPR+EDP +I  +I+ GI       +  NR EAI  A ++   +D++++AGKGHE  
Sbjct: 432 TDDNPRNEDPIQIIVDILSGIDDPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKGHEEY 491

Query: 473 HIVTNGEKKMSVDCD 487
             +   E++   D +
Sbjct: 492 QQIGA-EQRPFSDRE 505


>gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
 gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
          Length = 506

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 235/487 (48%), Gaps = 15/487 (3%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S +  +WRE  +  ++ DSR I+   +FVA+ G+  DG  FIP AI  GA A++  +   
Sbjct: 21  SDWQEKWREHSVANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATAVLAEADSI 80

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
                   +    I+      ++LS  A+R Y +      +LAVTGT+GK++++  + Q 
Sbjct: 81  ANHGDIVEQDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW 140

Query: 137 CQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G ++  +G T      +      TT + I +   L  L  QG    ++E SSHGL 
Sbjct: 141 ANLIGYNAGVMGTTGNGLLNSLIPAVNTTGNAIEIPHVLHDLVEQGADFAAMEISSHGLV 200

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++ +A  FTNL RDH+DYH     Y +AK  LF E           ADD     
Sbjct: 201 QGRVKALQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTEHQAGIPVIN--ADDDIGLS 258

Query: 256 VMKRAHNAGCRVLSV-----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +    NA   V        GYQG+ + L  V        ++         F  PL G F
Sbjct: 259 WLADLPNAVAVVTDKARLGEGYQGQALWLTDVAYSTQGVNISFDSSWGAGQFTAPLVGSF 318

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L+A    +A+G     ++    +L  V GR E    + +   + VDYAHT ++LE
Sbjct: 319 NVSNLLLALATLLALGHSIDKLIAAAPRLTAVIGRMEVFQRSDKPM-VVVDYAHTPDALE 377

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+ +R    G++  +FGCGGDRD GKRP+M +I+  LAD  I+TDDNPR+E P  I +
Sbjct: 378 KALQALRVHCQGKLWCIFGCGGDRDIGKRPMMAEISERLADQIIITDDNPRTEAPAGIVS 437

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +++ G+          +R  A   AIE     D++++AGKGHE   ++ +       D +
Sbjct: 438 DMLQGLTLPQQAQVIHDRKLACTYAIEHARANDIILLAGKGHEDYQVLADRTIHY-SDRE 496

Query: 488 IIREILG 494
            ++ + G
Sbjct: 497 TVQALFG 503


>gi|150260415|ref|ZP_01917143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
 gi|218927746|ref|YP_002345621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis CO92]
 gi|21362700|sp|Q8ZIF4|MURE_YERPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115346357|emb|CAL19229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diam i nopimelate
           ligase [Yersinia pestis CO92]
 gi|149289823|gb|EDM39900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
          Length = 490

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 165/489 (33%), Positives = 236/489 (48%), Gaps = 14/489 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AIV  +
Sbjct: 3   DLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
                D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++    +
Sbjct: 63  DGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +S  +G               TT S + +   L  L  QG T  ++E SSH
Sbjct: 123 AQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       ADD  
Sbjct: 183 GLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--ADDDV 240

Query: 253 SKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  + +   A    +      G+ G ++   KV    N   +       + +    L G
Sbjct: 241 GRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N LVA    +  G   A +L     L  V GR E          + VDYAHT ++
Sbjct: 301 AFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I
Sbjct: 360 LEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 419

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N       D
Sbjct: 420 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY-SD 478

Query: 486 CDIIREILG 494
              +  +LG
Sbjct: 479 RVTVARLLG 487


>gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 494

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 243/504 (48%), Gaps = 27/504 (5%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ++I+ L +  +Q      I ++++DSR ++   +F+A+ G   DGH +I       
Sbjct: 2   KTLKDIISTLDVQQVQGNQNVSIQDITADSRAVKPNSLFIALDGATVDGHNYID------ 55

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
            +A+   +   +     T+ ++  ++ V +TR+ +       +      +  + VTGT+G
Sbjct: 56  -KAVAAGAVAVIVSKPVTVPNDVCVITVSDTRQAMMACVPYFFDYPANRMRMVGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ I +  G     IG    +    +     TTP  + L   L  +  + V +
Sbjct: 115 KTTTTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVQENVEY 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLP 239
             +E SSH L   R+ G++     FTNL +DH+D+H+T + Y  AK +LFE+        
Sbjct: 175 CVMEVSSHALALGRVSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I  DD+Y   VM++         ++G     ++   V       Q T++ +G+ 
Sbjct: 235 DNKGAVINIDDSYGHRVMEKTTAPTITYSTLG--KGTLNASDVHMSTKNSQYTVNYKGES 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +       G F VYN L A G C+  GI    +   L+    VPGRFE +    +   + 
Sbjct: 293 YPVSMNTTGLFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELI-EEGQDFAVV 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L+ IL+  + I   RII+VFGCGGDRD  KRPIMG+IA +  D   VT DN
Sbjct: 352 VDYAHTPDGLQNILETAKAIKENRIIIVFGCGGDRDATKRPIMGRIAAEYGDKIYVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PR+EDP +I  ++  G+         +    +R EAI  AI      D++++AGKGHE  
Sbjct: 412 PRTEDPVQIVKDVEVGVKEALRDGTSYEVIVDRREAINHAIHDAKAGDIVIIAGKGHENY 471

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I+ N E     D +  R+ L  I
Sbjct: 472 QILKN-ETIHFDDREEARKALKEI 494


>gi|168230402|ref|ZP_02655460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194469969|ref|ZP_03075953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456333|gb|EDX45172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335121|gb|EDZ21885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 495

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 167/505 (33%), Positives = 245/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINSNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGGIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
 gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
          Length = 486

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 243/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +++LI     E    +        + +I     DSR ++   +F A+ G + DGH +I
Sbjct: 1   MVIENLIKG--IETKKIIGPVQNDIIDIQI-----DSRGVKKQSLFAALRGTQVDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAI QGA AI+        D       +   + V ++   L + AS  Y      +  +
Sbjct: 54  NQAIKQGAVAILCE------DLPEQKNKDITYIQVPHSEAALGILASTFYDNPSSKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ + +  ++ G  +  +    + I   A +   TTP  + + K L  +
Sbjct: 108 GVTGTNGKTTVATILYKTFKKLGYKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  +  +E SSH +DQ R+ G+K   G FTNL RDH+DYH+T   Y  AK   F + 
Sbjct: 168 VLRGCDYAFMEVSSHAIDQKRISGLKFAGGIFTNLTRDHLDYHKTIANYIKAKK-EFFDN 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + +++  DD     +++   +A               + +              E 
Sbjct: 227 LPKNAFSLVNLDDKNGMVMVQNTKSAIHTYSLRSLCDFKARVIESHFNGMIL------EI 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + D +    G+F VYN L   G    +G  +  VL  +  L  V GRFE +    +G  
Sbjct: 281 NNTDVVVQFTGKFNVYNLLAVYGTACLLGQKADEVLIAISTLKSVSGRFETL-QAPKGYT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VDYAHT ++L  +L  I  I    G++I V G GG+RD+GKRP+M K ++  +D  I+
Sbjct: 340 VIVDYAHTPDALTNVLTTIHDILDGKGKVITVVGAGGNRDKGKRPLMAKESIKNSDTVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR EDP++I  +++ G+        +   NR +AI+TA  +    DV+++AGKGHE
Sbjct: 400 TSDNPRFEDPQEIIKDMLDGLNTEEKQNVLTIENRRDAIKTACMLAKTNDVILIAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G K    D + +R I 
Sbjct: 460 TYQNIQ-GVKHHFDDKEEVRNIF 481


>gi|291086123|ref|ZP_06354888.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069447|gb|EFE07556.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
          Length = 471

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 159/474 (33%), Positives = 240/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   +G +FVA++G++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  E +  + VTGT+GK++    + Q CQ  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTTTQLLAQWCQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLAGLVAQGATVGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  +    + +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   +      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-SAPGKTTVVVDYAHTPDALEKALQAARLHCTGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA   AD+ +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDILAGMLDAGRAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI    + DV++VAGKGHE   IV +       D   +  +LG+I
Sbjct: 418 EGRAEAVTNAIMQAQENDVVLVAGKGHEDYQIVGSQRLDY-SDRVTVARLLGVI 470


>gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
 gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
          Length = 497

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 162/500 (32%), Positives = 237/500 (47%), Gaps = 16/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ+L+      +     I      E +I  +S++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLQELLT----TIPLVSPISSPIALETEITGISTNSHACQPGDLFIGLPGTRVDGGEFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  GA     +              +  ++VV +     +  A++ Y    +   ++
Sbjct: 57  RSALETGAV---AAIISPAAAAKFPPPEDASVMVVADLVTAAAAIAAKFYHYPAQTLKLI 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++G+ +   G   T     Q+    TTP    L  +L+  
Sbjct: 114 GVTGTNGKTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKA 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G     +E SSH L Q R+ G       FTNL RDH+DYH   + YF AK +LF   
Sbjct: 174 VSAGNEIAVMEVSSHALAQGRVQGCTFPVTVFTNLTRDHLDYHLDMEDYFAAKAKLFSPD 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII  DDAY + +            SV       + K +       Q  +    
Sbjct: 234 -YLQGKAIINLDDAYGQRLAASLSPQQVLTYSVCDARADFYTKDLHYQPTGVQGVMVTPQ 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356
            +  F  PL G++ + N L A    +  G+D   V+  + +   VPGR E       +  
Sbjct: 293 GEIAFASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFSGVPGRMERVSIAPDQDI 352

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R   SGR+I VFGCGGDRD+ KRP+MGKIA +LAD+AIVT
Sbjct: 353 SVIVDYAHTPDSLENVLKASRPFISGRMICVFGCGGDRDRTKRPLMGKIAAELADLAIVT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+E PE+I  +I+ GIP         +R  AI TAI+     D +++AGKGHE   
Sbjct: 413 SDNPRTESPERILQDIVAGIPSEITVQVISDRALAIDTAIQAAQPGDGVIIAGKGHEDYQ 472

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 473 ILGT-EKIHFDDREQARAAL 491


>gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 495

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 142/505 (28%), Positives = 235/505 (46%), Gaps = 22/505 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+     ++            E  I  +S +S   Q G +F+AI G+K+DG  +I
Sbjct: 1   MTLRELLAPWIKQI----------PFECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P AIA+G  AI+  +    +        + PI+  +   K LS  A   Y +      ++
Sbjct: 51  PSAIAKGVAAILAEAKGQTKHGEIHKLHDVPIIYFNQLNKMLSAIAGHFYQQPSRFLRLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            +TGT+GK++++  +       G +S  +G          +    TT S I + + L  +
Sbjct: 111 GITGTNGKTTISYLLANWLSLLGETSAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQV 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGV    +E SSHGL Q R+  +   A  F+NL +DH+DYH     Y  AK +LF EL
Sbjct: 171 CDQGVKFSIIEVSSHGLVQDRVSNLNFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSEL 230

Query: 238 LPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              +    +       +   + +         +   + G ++  +K+    +   +  + 
Sbjct: 231 NVSKRIINVDDTVGKNWLVHLPQAVAVTANNSIPHNWPGYWLCARKIIHHTSGVNINFNS 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +    L GEF V N L++    + +G     +++   KL  + GR E    +   
Sbjct: 291 YWGSGEIYSNLIGEFNVSNILLSLATLLVLGYSLKNLVKTSRKLQAICGRMEVFSAHGWP 350

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++L   L  ++    G+I  +FGCGG+RD+ KRPIMG IA + AD  I+
Sbjct: 351 V-VIVDYAHTPDALAKALLAVKMRCQGKIWCIFGCGGNRDKSKRPIMGAIAEEYADYIII 409

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T+DNPR E+P+ I  +I  G              R  AI+ AI   + QD++++AGKGHE
Sbjct: 410 TNDNPRWEEPQDIIEDIKCGFINGNHTNKTVILCRSLAIQHAIIHASPQDIILIAGKGHE 469

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              I+  G++    D  ++  +L L
Sbjct: 470 NYQIIK-GKQFYYSDRIVVSNMLKL 493


>gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
 gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
          Length = 499

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 147/505 (29%), Positives = 236/505 (46%), Gaps = 24/505 (4%)

Query: 1   MKLQDL----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L+ L    +      L++Q     +     ++  +  DSR    G IFVA+ G   DG
Sbjct: 1   MNLKPLNNYIVALTEEHLLSQAHTGAVSTELCQVTSIEQDSRRASEGCIFVALRGVHVDG 60

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             +IP+A+A G   IV            ++      L V +T K +++ AS  Y +    
Sbjct: 61  ADYIPKALAAGCRIIVTEHP-----RPESLSDEVAWLTVTDTAKAIAVLASVYYDRPERQ 115

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
             I+ VTGT+GK++ A+   Q+    G+ +         I         TTP  + L + 
Sbjct: 116 LTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVCIRIGDEEYPATHTTPDALELHRV 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +  +   G  ++ +E SSH L Q R+ G+      FTNL RDH+DYH T QAY  AK  L
Sbjct: 176 MRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLL 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+  L  ++ A++ ADD     +++             +      L            T+
Sbjct: 236 FDN-LSPDAYALVNADDRNGSVMVQNCAAHLHTYAMRSHADYMSQL----LGQYVDGSTL 290

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            ++ ++ +             A+      +   +D +L+L  +  L  V GRF+ +  + 
Sbjct: 291 LLDNEEVEIKLVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLA-SP 349

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  + VDYAHT ++LE +LK +  + + ++ VV G GGDRD GKRP MG+IA ++ +  
Sbjct: 350 RGYHVVVDYAHTPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCNCL 409

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI-----EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +T DNPRSEDP+ I  +++ GIP           +R +AI  A     + D++V+AGKG
Sbjct: 410 YLTSDNPRSEDPQTIIDQMLEGIPQVERDQVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET   +  G K    D ++ +EI 
Sbjct: 470 HETYQEIK-GIKHHFDDKEVAQEIF 493


>gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 496

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 158/499 (31%), Positives = 230/499 (46%), Gaps = 21/499 (4%)

Query: 9   KDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL   L     +   + +I  +  DSR  + G +F  IVG   D H FIP     G
Sbjct: 3   KRLEELAALLPGARIVGDAQTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++   A      S  + +   +L V N  K L       Y        ++ +TGT+G
Sbjct: 63  ARAVLTERA------SVDVPAGVAVLYVLNLEKALDTIVPFFYDYPARVMRVVGITGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  V+ I + +G     IG   + I         TTP  I L + L+ + ++G+  
Sbjct: 117 KTTTSYLVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDT 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKE 241
           V +E SSH L   R+ GI+     FTNL +DH+D+H+T + Y  AK  LFE       KE
Sbjct: 177 VVMEVSSHALALGRVAGIEFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKE 236

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               +   D  + E M+           V +           A    +   +    + F 
Sbjct: 237 GKTAVLNADDAASETMRAYTRCPIITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFH 296

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G F V+N L A G  +A  + +  +   L     VPGRFE V        + VD
Sbjct: 297 LHTGITGLFNVHNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELVREGQ-DFAVIVD 355

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + +E +L+  R +T G II VFGCGGDRD+ KRPIMG+I  ++ADIAI+T DNPR
Sbjct: 356 YAHTPDGMENVLRTARAVTKGHIIAVFGCGGDRDRTKRPIMGRIGAEMADIAILTSDNPR 415

Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDP  I  E+  G+        + +  +R  AI  AI      D +V+ GKGHET  I+
Sbjct: 416 TEDPTAIVDEVERGVLPVIGDKPYEKIVDRRTAIFHAIGRAQAGDTVVILGKGHETYQIL 475

Query: 476 TNGEKKMSVDCDIIREILG 494
            +G      D +  RE + 
Sbjct: 476 KDGTI-HFDDREQAREAIR 493


>gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
 gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
          Length = 493

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 228/503 (45%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F    ++             N+++ DSR +  G +F+AI G++ DG  +I
Sbjct: 1   MLLRDLLAPWFHYAGSES-----------FNKLTLDSRAVGPGDLFIAIPGHQADGRKYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
             A+ QGA A +V +                IL     R+  +L A           ++ 
Sbjct: 50  RSAVQQGAVASLVHTDDPESHGKCVDDEGKQILFFQLNRQLSALAAQAYPLSAERLKLVG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+   + Q+    G  S  +G           D+  TT   I +   L    
Sbjct: 110 VTGTNGKTSITQLMAQLVTLLGKQSAVMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFD 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG    ++E SSHGL Q R++ +      FTNL RDH+DYH T QAY +AK RLF    
Sbjct: 170 AQGAELCAMEVSSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFNFPS 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQVT 292
                  +  DD   K+ +           S+          K I+ +     H      
Sbjct: 230 LSSGLINL--DDEIGKQWLAEHDTGKYTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAK 287

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +   G   D   PL G F + N + A G    +G D   ++  + KL  V GR E   T 
Sbjct: 288 LVWPGGHADLCSPLLGSFNLSNLIAALGALYLLGFDMHSLVAVVPKLQAVAGRMERF-TT 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I VDYAHT +++E  LK +R    G +  +FGCGGDRD+GKRP+M + A   AD 
Sbjct: 347 PDDVTIVVDYAHTPDAIEQALKALRGHCDGELWCLFGCGGDRDKGKRPLMAQAAEKYADR 406

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +VT DN RSE P+ I  +I+ G+      + + +R  AIR  +      D++++AGKGH
Sbjct: 407 VVVTSDNARSEQPDVIINDILEGLTAPDKALTQVDREVAIRQVVANAKAGDLVLLAGKGH 466

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET   +    ++   +  + RE+
Sbjct: 467 ETYQEIAGVRRQY-DERALAREL 488


>gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
 gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
          Length = 493

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 148/502 (29%), Positives = 227/502 (45%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   +++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117
            +A+AQGA A++V +    +            +      K +S  A+  Y         I
Sbjct: 51  DKALAQGAIAVLVHTDSIEEQGKVIATEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+S +    Q+       +  +G           D+  TT   I L + L  
Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLYE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK  LF  
Sbjct: 171 FADKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRF 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293
              +     +  DD      +    N   ++     +       + K         Q  +
Sbjct: 231 DALRHGLVNL--DDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQAKL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D   PL G F + N L A       G+D   +   +  L  V GR E   T  
Sbjct: 289 VWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTAD 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  
Sbjct: 349 -NITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV+++AGKGHE
Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G +    +  + R++
Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488


>gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 489

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 245/504 (48%), Gaps = 25/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+     E+I+          +     VS DSR ++ G +F+ I G   DGH +I
Sbjct: 1   MKLYNLLKDLDYEIISGSV-------DIDARSVSYDSRKVKGGSVFICIKGANADGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI  GA AIV+     + +       N  ++ V NT+  L+  A+  Y +  +  N++
Sbjct: 54  DEAIKSGALAIVIQEEIKIDN------ENITVIKVRNTKLALASIANVFYNEPSKEINLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSPIYLAKAL 174
            VTGT+GK++V  +++ I +     +  IG      +      Q    TTP  + L    
Sbjct: 108 GVTGTNGKTTVIHYIKDILESYKKRTAIIGTLGYEFNKEKASIQKVNPTTPESLELQGLF 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               ++G  ++ +E +S  L + R++      G FTNL +DH++ H T + Y N K++LF
Sbjct: 168 REFINKGAENIVMEVTSSALAKQRVEYCDFKVGVFTNLSQDHLEEHGTMENYKNEKIKLF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++             +   ++   +    G    +     +  +         K +    
Sbjct: 228 KKCELGVINLDDGIAEEIIQKASCKILTYGINKEADIRATEIRYRNDCIIFKIKFRDIKW 287

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D    +PG+  VYN L A G CI +G+D   ++  L  L  VPGR E +  N  
Sbjct: 288 RWWCITDVKVNIPGKITVYNVLAAIGACIGLGMDMGDIISCLSNLRHVPGRLEMIKNNL- 346

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VDYAHT ++LE +L   R  T G++I VFGCGGDRD+ KR +MG  A  L+D  I
Sbjct: 347 NKNIIVDYAHTPDALERLLMMARETTKGKLITVFGCGGDRDKSKRKVMGMAAGILSDYCI 406

Query: 415 VTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T DNPR+EDP KI  +I  G+      + +  +R +AI   +++L   D+L++AGKGHE
Sbjct: 407 ITSDNPRTEDPIKIIEDIEEGMEVINSTYEKIVDRKKAIEKGLKLLKDDDLLIIAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
              I+   +K    D +I+R+ LG
Sbjct: 467 DYQIIG-KDKIYFDDREIVRKALG 489


>gi|293417961|ref|ZP_06660583.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
 gi|291430679|gb|EFF03677.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
          Length = 495

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGGI 494


>gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 502

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 230/473 (48%), Gaps = 18/473 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSATIRSNT 90
            V+ DSR ++ G +F+A  G+  DG  +I +AIA GA A+    A +   DF+       
Sbjct: 29  GVTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGTPDFAWNRTWQV 88

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L V   R+     A+ +YG+  E +  +AVTGT+GK+SV+ ++     R       IG
Sbjct: 89  ANLAVAGLRELCGPLANAIYGRPSERLSLIAVTGTNGKTSVSQWIAATHPR---RCAVIG 145

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +     +   TTP+   L + L+  +       ++EASS G+ + RLDG ++   
Sbjct: 146 TLGAGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASSIGIAEGRLDGARVDVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T  AY  AK RLF    P+   A+   DD + +E+   +       
Sbjct: 206 VFTNLTRDHLDYHATMAAYAQAKARLFAW--PRLRLAVSNLDDPFGRELAALSTATKVIG 263

Query: 268 LSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +       +   I  + +    +  +  +            L G + V N L  A + I
Sbjct: 264 YTQQAGADDRQGTIRAENIEETIDGLRFRLCAPNGRALVESGLLGRYNVSNLLAVAAVLI 323

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+    V E   +L   PGR E +G       + VDYAHT ++LE  L  +R + + R
Sbjct: 324 DAGLTPKAVAERFAQLSSPPGRLEKIG-GHNEPLVIVDYAHTPDALESALMALRPVANAR 382

Query: 384 ---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
              ++V+FGCGGDRD+GKRP+M  +A   AD  ++T DNPRSE+   I A+I+ G P  +
Sbjct: 383 GAGLVVIFGCGGDRDRGKRPLMAAVAARHADRVVLTSDNPRSENEHAILADILAGAPTAL 442

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R EAIR  +   +  DV+++AGKGHE    +  G ++   D    R  L
Sbjct: 443 VIADRGEAIRRTLLAAHPADVVLIAGKGHEPYQEIA-GVRRPFSDGAQARAAL 494


>gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 956

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 143/467 (30%), Positives = 228/467 (48%), Gaps = 17/467 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I+ G IFV I G   DGH FI  A+ +GA  IV              + + P 
Sbjct: 38  VQTDNRKIKPGDIFVCIQGANFDGHNFINSALEKGAAIIVC---------REINKRDIPY 88

Query: 93  LVVDNTRKFLSLFAS--RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + V +TRK  ++ A    L  K P  ++ +TGT+GK++ +  + +  +  G     IG  
Sbjct: 89  IKVKDTRKAAAVIARTVMLPQKIPYTLIGITGTNGKTTTSLLLYEALRNLGFRCGWIGTL 148

Query: 151 STISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                  A  +  TTP  I L +    +    V +V +E SSH L   R+ G+K     F
Sbjct: 149 GYYIEGKAFPSERTTPDIIELNEIFGQMIEAKVDYVVMEVSSHSLSLDRIYGVKFDYCLF 208

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +NLGRDH+D+HQT + Y  AKM  FE+     S ++I   DA+  ++         +V S
Sbjct: 209 SNLGRDHLDFHQTLENYGKAKMSFFEQGAKDGSISVINTADAFGVQIKDMLKEKQAKVYS 268

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +G          +    N     +  E  +      L G F + N  +      A+G   
Sbjct: 269 LGGNDAEFQYSDIKTDINTSSFKLIAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFSP 328

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   L+ +  V GR E V  N+    I++DYAHT  +++ +LK +  +   RI+ + G
Sbjct: 329 EAIHNSLKDIPPVQGRLERV-ENNFNIGIFIDYAHTPEAIDNVLKAVEDLPHKRILCLIG 387

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRI 446
            GGDRD+GKRP+M K AL+ +D+ I++DDNPRSE+PE+I  +I+     F+      NR 
Sbjct: 388 AGGDRDKGKRPLMLKSALNHSDVVIISDDNPRSENPERIIKDIVSSSDIFLPWWIIRNRQ 447

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AI + I +  ++D++++ GKG E    +  G +    D +   + L
Sbjct: 448 QAISSIIRLAQEEDIVLICGKGSEDYQEIE-GVRHHFNDREETLKAL 493



 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 146/448 (32%), Gaps = 55/448 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N +S DSR I+ G +F+AI G K DGH ++   +       +    Y L  FS       
Sbjct: 537 NYLSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLNQFSEENS--- 593

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
               V+N  + + L   +     P   +A+TG++GK++    + Q+ Q S      +   
Sbjct: 594 -YYQVENCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSAPVLKTLANE 652

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + I    +      P      +  +           + A +               G   
Sbjct: 653 NNIIGLCKTIIRIKPE-----QQYAIFELGTNHFGEIAALADV--------ANPDIGIIL 699

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H++Y   ++  F  K+ LF+  L      +   DD     +     + G    S 
Sbjct: 700 NIGPSHLEYFGDEEGVFREKITLFKRPLALR---LYPGDDFRFDYLANEGISIGYNENSD 756

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +    K   + +            +  +  P        N+  A  L + +GID  
Sbjct: 757 YRITRHKCNKDNQSFY----------LNEDLWFLPYGAPHYAINSAFAIVLGLKLGIDKE 806

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFG 389
            +   L K   +  R +       G  I   Y     S++  L+  + +   +    + G
Sbjct: 807 KMQTALNKPIQLELRNQVEKRG-TGLLILDCYNANPYSMQKALEYWQELNPEQPHYAILG 865

Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDN------PRSEDPEKIRAEIIHGIPGFI 440
                G+       ++  +  ++    + T  N      P  E P      I H      
Sbjct: 866 DMLELGESSILYHQMISAMLAEMRYEKLYTVGNYSRIYHPEKESP------IFHYNTVEE 919

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +R       +  L +  +++V  KG
Sbjct: 920 LIADRK------LNSLPENAIILV--KG 939


>gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum WCFS1]
 gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus plantarum WCFS1]
          Length = 550

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+   LI       +    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  +
Sbjct: 58  MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 112

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAI +GA+ IV S    +         N P++ V+NT + +++ A   YG   + +  +
Sbjct: 113 DQAIEKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 163

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++QI +    ++  IG     I         TTP  I   + L+ +
Sbjct: 164 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 223

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L
Sbjct: 224 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 283

Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             K         A++  DD   +E     + A   +         I+ + V    +  + 
Sbjct: 284 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 341

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +SV G        L G+F VYN L A     A GI    +++ LEK+  V GRF+ V  
Sbjct: 342 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 400

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +  G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ + 
Sbjct: 401 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 460

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGH
Sbjct: 461 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 520

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E   I+    K    D +   + L L
Sbjct: 521 EDYQIIGR-TKHHFDDSEEAAKALAL 545


>gi|323181782|gb|EFZ67195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1357]
          Length = 490

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 169/491 (34%), Positives = 249/491 (50%), Gaps = 14/491 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +
Sbjct: 3   DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
                D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++    +
Sbjct: 63  KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +S  +G               TT S + +   L+ L  QG T  ++E SSH
Sbjct: 123 AQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E       AII ADD  
Sbjct: 183 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEV 240

Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  + +  +A        ++    G+++    V    +   +  S    D +    L G
Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+A    +A+G   A +L+   +L  V GR E   T      + VDYAHT ++
Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I
Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N       D
Sbjct: 420 INDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SD 478

Query: 486 CDIIREILGLI 496
              +  +LG+I
Sbjct: 479 RVTVARLLGVI 489


>gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
 gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
          Length = 493

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+   LI       +    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  +
Sbjct: 1   MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAI +GA+ IV S    +         N P++ V+NT + +++ A   YG   + +  +
Sbjct: 56  DQAIGKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++QI +    ++  IG     I         TTP  I   + L+ +
Sbjct: 107 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L
Sbjct: 167 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 226

Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             K         A++  DD   +E     + A   +         I+ + V    +  + 
Sbjct: 227 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 284

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +SV G        L G+F VYN L A     A GI    +++ LEK+  V GRF+ V  
Sbjct: 285 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 343

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +  G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ + 
Sbjct: 344 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 403

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGH
Sbjct: 404 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 463

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E   I+    K    D +   + L L
Sbjct: 464 EDYQIIGR-TKHHFDDSEEAAKALAL 488


>gi|212712752|ref|ZP_03320880.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
 gi|212684668|gb|EEB44196.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
          Length = 495

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 150/495 (30%), Positives = 228/495 (46%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   L+ F +      + E++ DSR   AG +F+A+ G++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLCELLAPFGVSTTNISLREMTLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVSAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +  +    ++         P++ +++    LS  A   Y +    +  + VTGT+GK++ 
Sbjct: 64  IAEAHGEAEEGEIRFVHGVPVIYLNDLNNRLSALAGEFYHQPSSQMKLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G            +  TT S + +   L+ L ++  T  ++E
Sbjct: 124 TQLIAQWAKGLGETSAVMGTVGNGILGHVSPSENTTGSAVDIQLELTQLLNKKATLTAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+  ++  A  FTNL RDH+DYH     Y  AK  LF     K       A
Sbjct: 184 VSSHGLVQGRVAALQFDAAVFTNLSRDHLDYHGDMANYEAAKWLLFSTHHTKTQIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----KVCAIHNKQQVTISVEGKDFDFLF 304
           DD    + ++R   A    +       +         V        +  +    +  F  
Sbjct: 242 DDEVGLKWLQRLPQACAVTMEDSIPANWQGPWLKTTDVDYHDKGATIHFASTWGNGSFES 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G F V N L+A    + +      +L     L  V GR E      +   + VDYAH
Sbjct: 302 PLMGAFNVSNLLLAMATLLMMDYPLEKLLATTNALMPVCGRMEVFSVTGKPT-VVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  VFGCGGDRD+GKRP+MG  A   AD  ++TDDNPRSED
Sbjct: 361 TPDALEKALAAARLHCKGKLWCVFGCGGDRDKGKRPLMGASAEQYADKVVITDDNPRSED 420

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ GI      +    R EA+   I   +  DV++VAGKGHE   I+ +    
Sbjct: 421 PLDIINDIMAGILDSSRVLAIPGRPEAVTNTILQAHPDDVILVAGKGHEDYQIIGSRRLD 480

Query: 482 MSVDCDIIREILGLI 496
              D   +  +LG++
Sbjct: 481 Y-SDRLTVARLLGVM 494


>gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
 gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
          Length = 471

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  A++  +     D         P+
Sbjct: 1   MTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  E +  + VTGT+GK++    + Q  Q  G ++  +G  
Sbjct: 61  IYLSQLNQRLSALAGRFYLQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETAAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                     +  TT S + +   L+ L+  G T  ++E SSHGL Q+R+  +   A  F
Sbjct: 121 GNGLLGQVCPSENTTGSAVDVQHVLNDLAEHGATFAAMEVSSHGLVQNRVAALPFAAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH    +Y  AK  LF      +  AII ADD   +  + +  +A    + 
Sbjct: 181 TNLSRDHLDYHGDMASYEAAKWSLFAGHEVGQ--AIINADDDVGQRWLAQLPDAVAVTMQ 238

Query: 270 ----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G +G+++    V    N   V  S    D +    L G F V N L+A    +++
Sbjct: 239 GNLQPGCRGRWLKATDVNYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L   R    G++ 
Sbjct: 299 GYPLAALLKSGSQLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALAAARLHCQGQLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA   AD  +VTDDNPR+E+P+ I A+I+ G+      +  
Sbjct: 358 CVFGCGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLDPGRALVI 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+ +A+    +QDV++VAGKGHE   +V N       D   +  +LG+I
Sbjct: 418 HGRAEAVTSAVMQAKQQDVVLVAGKGHEDYQLVGNRRLDY-SDRTTVARLLGVI 470


>gi|215485251|ref|YP_002327682.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263323|emb|CAS07638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Escherichia coli O127:H6 str. E2348/69]
          Length = 495

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGGI 494


>gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
 gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
          Length = 493

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 148/502 (29%), Positives = 227/502 (45%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   FP              E+   +++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWFPY-----------AGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY---GKHPENI 117
            +A+AQG  A++V +    +            +      K +S  A+  Y         I
Sbjct: 51  DKALAQGVTAVLVHTDSIEEQGKVITTEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK+S +    Q+       +  +G           D+  TT   I L + L  
Sbjct: 111 VGITGTNGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHE 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +GV   ++E SSHGL Q R+D +      FTNL RDH+DYH   + Y  AK  LF  
Sbjct: 171 FAGKGVNTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRF 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTI 293
              +     +  DD      +    N   ++     +       + K         Q T+
Sbjct: 231 DALRHGLVNL--DDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQATL 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + D   PL G F + N L A       G+D   +   +  L  V GR E   T  
Sbjct: 289 VWPEGEIDIRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTAD 348

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A   AD  
Sbjct: 349 -NITLVVDYAHTPDAIEQALNALRRHCAGELWCVFGCGGDRDKGKRPLMGQAAEQCADRI 407

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DN RSEDP +I  +II G+      + + +R+ AI+  +      DV+++AGKGHE
Sbjct: 408 MVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKGHE 467

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G +    +  + R++
Sbjct: 468 TYQE-AAGVRHDYDERALARQL 488


>gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4]
 gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella loihica PV-4]
          Length = 488

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 149/499 (29%), Positives = 238/499 (47%), Gaps = 23/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+   F     +            ++ ++ DSR I  G +FVA+ G++ DG  ++
Sbjct: 1   MHLCDLLAPWFHYAGGES-----------LSHLTLDSREIGQGSVFVAVPGHRVDGRDYV 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS--RLYGKHPENIL 118
             A++QGA A ++ +    +    +  +    +     ++ LS  AS   + G+    ++
Sbjct: 50  DTALSQGAVAALIHTDDPAEHGKVSQDNGLR-IYFFQLQRQLSALASQLYVLGRDRIKLI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   + Q+    G  +  +G           D+  TT  PI + + L   
Sbjct: 109 GVTGTNGKTSVTQLIAQLSDGLGKPAAVMGTLGNGLWGQLVDSGNTTADPITVMRQLEDF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R+D +      FTNL RDH+DYH +  AY  AK RLF   
Sbjct: 169 DRQGTAVCAMEVSSHGLVQGRVDAVPFDVAVFTNLSRDHLDYHGSMDAYGAAKQRLFRFS 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   +  DD   ++ ++     G       G +G  I+ K+V         T+   
Sbjct: 229 SLSHGLINL--DDPVGRQWIQDKRCKGLVGFSIQGQEGAAIYTKEVKQHSQGVSATLVWP 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PL G F + N + A G     G   A +L  +  L  V GR E   T   G 
Sbjct: 287 EGEAKIDSPLLGIFNLSNLVAALGALYLSGYAMAQLLTQVSSLKPVAGRMERF-TTQEGV 345

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +++E  L+ +R    G++  VFGCGGDRD+GKRP+M + A + AD  +VT
Sbjct: 346 TLVVDYAHTPDAIEQALRALRGHCRGKLWCVFGCGGDRDKGKRPLMARAAEENADCVMVT 405

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DN RSEDP  I  +++ G+      + + +R +AIR  + + +  D++++AGKGHET  
Sbjct: 406 SDNARSEDPMAIIQDVLAGLNKPQIALTQVDRQQAIREVVTLASNGDLILLAGKGHETYQ 465

Query: 474 IVTNGEKKMSVDCDIIREI 492
            +  G++    +  +   I
Sbjct: 466 EIA-GKRLDYDERALAAAI 483


>gi|54293892|ref|YP_126307.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
 gi|53753724|emb|CAH15182.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
          Length = 483

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 153/502 (30%), Positives = 235/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+                   +  ++++ +DSR ++ G +F A  G   DG L+I
Sbjct: 1   MKLTQLLEPWIK----------RDIIDGTVSDIKNDSRLVKEGDLFAAYPGAASDGRLYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
                +   +   +  Y   +    I   +  P + +    + L   A R +    + + 
Sbjct: 51  ----EKAVASGAAAVVYEPNNLPQGITLPTAIPCIAIPQLAEKLGEIAKRFFNNPSQFLG 106

Query: 119 --AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALS 175
              VTGT+GK+++A  + Q     G  S  IG          +    TTP  + L + + 
Sbjct: 107 LTGVTGTNGKTTIAYQLAQAHDLLGQHSAYIGTIGQGKVDALKPLENTTPDALCLQRLMH 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G+  V +E SSH L QHR+D ++     FTNL  DH+DYHQT QAY  AK RLFE
Sbjct: 167 QYKEEGIKQVCMEVSSHALSQHRVDSLEFSQAIFTNLTLDHLDYHQTMQAYGAAKSRLFE 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   AII  DD     +         +V    +Q   +   +        ++ +  
Sbjct: 227 RSELQW--AIINQDDDCQDLMSNVLKTHVKKVTYGMHQNCDVKAIQWNMDITGTEIEVKS 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                       G+F +YN+L      +A G +   V++ + +L   PGR E V  +   
Sbjct: 285 PWGHHLLKIKALGKFNIYNSLAVYSSLLASGYNPEKVVQIMAELKAAPGRMEIVAQSPY- 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT ++LE +L  ++ I  GR+ VVFGCGGDRD+ KRPIMGK A   AD  ++
Sbjct: 344 --VLVDYAHTPDALENVLITLKQIKKGRLWVVFGCGGDRDKTKRPIMGKAASMYADNIVI 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPRSEDPE I  EI  G+P      +  NR EAI  A+      D++++AGKGHE+ 
Sbjct: 402 TSDNPRSEDPEIILNEIACGMPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKGHESY 461

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             + N  K +  D +++R ++ 
Sbjct: 462 QQIGN-TKHVFSDQEVVRRLMN 482


>gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
 gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 148/509 (29%), Positives = 224/509 (44%), Gaps = 33/509 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +  PEL    +   +         +  DSR ++ G IF+A+VG + DG  FI  A+ Q
Sbjct: 8   LGQWLPELALGKAASLVPG------SLCLDSRQVKQGDIFIALVGTRADGRQFIANAVEQ 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+ V +    Q          P++ ++     LS  A R Y      +  V  T   
Sbjct: 62  GAAAVFVEADKEWQGVHWIGE--VPVIALEQLTARLSELAGRYYAHPSRELRLVGITGTN 119

Query: 127 SSVASFVQQICQRSGL----SSFQIGPTSTISSFAQ-------------DNRLTTPSPIY 169
                 +      +G+     S  IG                          LTTP P+ 
Sbjct: 120 GKTTCSLLLAQLLAGVSGQGCSAVIGTLGYGLVDKHSLTPIAQQISLLTTTGLTTPDPVA 179

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L + L  L + G +  ++E SSH L Q R+ G+      FTNL +DH+DYH    +Y  A
Sbjct: 180 LQRILRQLRTGGASSAAIEVSSHSLQQKRVAGLAFDTAIFTNLTQDHLDYHGDLASYGKA 239

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  L      K   A+   DDA+ K +  +       +     +   ++L+ +    +  
Sbjct: 240 KAELLFMPGLKH--ALFNMDDAWVKALAAKTPAGVSAIGFSLQEPADVYLRDIHLHASGA 297

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-- 347
              +     + +F  PL G F + N +         G     VL  +  L   PGR +  
Sbjct: 298 SAWLVSPWGEAEFHSPLLGLFNLSNLVAVVSAACIQGAPLEQVLALVPHLVAAPGRMQPV 357

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V  + +  ++ VDYAHT ++LE  LK IR   + RI  VFGCGGDRD+ KRP+MG+IA 
Sbjct: 358 VVDADVQEIQVLVDYAHTPDALENTLKAIREHQADRIWTVFGCGGDRDKTKRPLMGRIAE 417

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L+D  IVT+DNPRSEDP +I A+I+ G+      +   +R +AI  A++     D++++
Sbjct: 418 KLSDYVIVTNDNPRSEDPARIAADIVRGLNNPNGCLVLADRAQAIDFAVQQAKPGDLVLI 477

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKGHE   I  +       D    R  L
Sbjct: 478 AGKGHEDYQIFADQT-LPFSDSQQARLAL 505


>gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH
           391-98]
          Length = 491

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 139/501 (27%), Positives = 227/501 (45%), Gaps = 26/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++   + P +    +I  + +DSR +  G +FV + G   D H F 
Sbjct: 1   MKLHTLVS-----CLHDFPVVPKE--NPEITSIEADSRKVTNGSLFVCMKGYTVDSHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        +   +       I  + P+++V +T + L++ A   Y +    +  +
Sbjct: 53  --------AEQAAAQGAAAIVAERPIDVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  + +I +  G  +  IG  +  I       + TTP  + L +A   +
Sbjct: 105 GITGTNGKTTTSHIIDEIMRAHGHKTGLIGTINMKIGDETFAVKNTTPDALTLQQAFHRM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
             + V    +E SSH LD+ R+ G       FTNL +DH+DYH+T + Y +AK       
Sbjct: 165 VEENVNSAVMEVSSHALDRGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQL 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                         ++  +         A   V         +  K +         T+ 
Sbjct: 225 GNSYHHNREKYAVLNNDDAATEAYIRSTAATVVTYGIDTHSDVMAKDIVMTSGGTTFTLV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +       L G+F VYNAL A    +  G+    +++ LE L  V GRFE V    +
Sbjct: 285 TPHESKKITMKLIGKFNVYNALAATAAGLVSGVSLQTIIDVLEHLTGVAGRFEVV-DGGQ 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE +L   +    G +  + GCGGDRD+ KRPIM  +A + A  AI
Sbjct: 344 DYTVIVDYAHTPDSLENVLTTAKQFAKGNVYCIVGCGGDRDRTKRPIMAGVATEYATHAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +T DNPRSEDP+ I  +++ G+    +    +R +AI  AI     +DV+++AGKGHET 
Sbjct: 404 LTSDNPRSEDPQAILDDMLTGVKGNNYEVIVDRKKAIFHAISEAQAEDVIIIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I+   E     D ++ +E +
Sbjct: 464 QIIG-KEVHHFDDREVAKEAI 483


>gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
 gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
          Length = 486

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 139/503 (27%), Positives = 221/503 (43%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E+I           E +I    +DSR ++ G  FV I G   DGH F+
Sbjct: 1   MKLNQLLERLEYEVIQGSD-------EAEITTFINDSRKVEKGSAFVCISGAVVDGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +   +GA A++V       +       +  ++ V ++R  L+L ++  +G   + +  +
Sbjct: 54  EEVAQKGAAAVIVEREVEAPE-------DMTVIRVADSRYALALMSAAYFGYPADKMKII 106

Query: 121 TGTSGKSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +         G       IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYMIKSILEGVGHKVGLIGTIEAIIGDEKIPAANTTPESYTIHQYFARM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  GI    G FTNLGRDHI      +       +  + L
Sbjct: 167 VEAGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGP---NEHKDFEDYKRCKGL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCAIHNKQQVTISV 295
           L ++    I   D    E +               +     +    V             
Sbjct: 224 LFQQCRLGIANVDDEYFEDVFSRATCRVETFGFSEKADLRAVDTHLVSRPGYLGVAYHVS 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PG+F VYN+L A  +C    +    + + L+ +  V GR E +  +   
Sbjct: 284 GLMDFDVEIDIPGKFSVYNSLTAIAVCRHFQVPVEQIKKALK-VANVKGRIEMIPVSDE- 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD++I+
Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYEPARLVCLFGCGGNRSRERRYEMGEVSGRLADLSII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P+ I  +I  GI      ++E  +R EAI+ AIE   + DV+V+AGKGHE 
Sbjct: 402 TSDNPRFEEPQAIIDDIKTGIHKTDGKYVEICDRKEAIKYAIEHGQRGDVIVLAGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G K    +  +IREIL 
Sbjct: 462 YQEIK-GVKYPMDERVLIREILE 483


>gi|322640591|gb|EFY37242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647732|gb|EFY44217.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648081|gb|EFY44548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656887|gb|EFY53173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657403|gb|EFY53675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663722|gb|EFY59922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666555|gb|EFY62733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672286|gb|EFY68398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322679505|gb|EFY75550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686166|gb|EFY82150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195010|gb|EFZ80196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200081|gb|EFZ85168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201098|gb|EFZ86167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209495|gb|EFZ94428.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212253|gb|EFZ97077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
          Length = 495

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 166/505 (32%), Positives = 244/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+   I      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|318040403|ref|ZP_07972359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0101]
          Length = 506

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 151/491 (30%), Positives = 230/491 (46%), Gaps = 21/491 (4%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       +  VS DSR +  G +FV + G + DG +F PQAI  GA   V+  A +  
Sbjct: 16  VPPGLANADVTSVSCDSRRVGPGTVFVGLPGAQVDGGVFWPQAIEAGAVLAVIGRAAAEA 75

Query: 81  DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
              A      P+LVV +   ++  + A+  + +  + +  + VTGT+GK++    ++ + 
Sbjct: 76  CPPADQD---PVLVVTDPVARWAGMLAAEFWQQPSQRLHLIGVTGTNGKTTTTHLIEHLA 132

Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S   G   +     +   + TT     L   L+  +  G    ++E SSH LDQ
Sbjct: 133 ASCGTPSALFGTLVNRWPGHSVTAQHTTAFADVLQGQLAQAAEAGAQVGAMEVSSHALDQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES----PAIIYADDAY 252
            R+ G +     FTNL +DH+DYH + QAYF AK  LF     +       A++  DD +
Sbjct: 193 QRVSGCRFAGAVFTNLTQDHLDYHPSMQAYFEAKASLFSAAFLEMHEGQATAVVNVDDPW 252

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +++ +R      R          + ++++       +  +        F  PL G F +
Sbjct: 253 GQQLAERLGGHAWRCSLEESSEAELRMEQLQFSSEGVKGVLVSPHGSGPFQSPLLGRFNL 312

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI------YVDYAHTS 366
            N L A G  +  G+  A +L+ L     VPGR E VG               VDYAHT 
Sbjct: 313 MNQLQAVGALLQQGLPLANLLQGLASFRGVPGRMERVGVGRAECCEGSLPAVLVDYAHTP 372

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           + LE  LK  R    G++I VFGCGGDRD+ KRP+MG IA  LAD  +VT DNPR+EDP+
Sbjct: 373 DGLESALKACRPFAQGQLICVFGCGGDRDRTKRPLMGSIAARLADQVVVTSDNPRTEDPQ 432

Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +I  +++ GIP       + +R  AI   +      D++++AGKGHE   I+    K   
Sbjct: 433 QILQDVMQGIPEGTAVQVEADRGRAIAAVVAAAQPADLVLIAGKGHEDYQILGT-TKIHF 491

Query: 484 VDCDIIREILG 494
            D +   + L 
Sbjct: 492 DDREEAEKALR 502


>gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
          Length = 489

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 131/502 (26%), Positives = 226/502 (45%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+     E+I          ++  I  +  DSR ++ G +FV +VG   + H FI
Sbjct: 1   MKLEKLLNGFEYEIIGN--------KDVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            Q I +GA AIV+S   SL++           + V +TR  L+L +   +    +   ++
Sbjct: 53  DQVIEKGAHAIVISQDVSLKE-------GMTYIRVKDTRIALALLSCAYFNYPSKELKVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK+S +  ++ I + +G     IG   T      +    TTP    L + +  +
Sbjct: 106 GITGTKGKTSSSLMIKSILEHAGKKVGIIGTNGTFIGDIHEPTANTTPESYELQRIMRKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +  +E SS  L  +R+ GI+   G FTN+  DHI      +    A+    ++ 
Sbjct: 166 VEHDCEYCVMEVSSQALKMNRVAGIEFDYGVFTNISPDHIGP---NEHKDFAEYMACKKH 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L       ++  D    E   +         S+        L  +   +   ++ I+ + 
Sbjct: 223 LFDFCQVGLFNKDDEHFEEFTKDVPCKVLTYSIEKDSDLKALH-IELYNENGELGITFDT 281

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           K   +  F   +PG+F  YNALVA  +C  I + +  +   L ++HV+ GR + +  +  
Sbjct: 282 KGLINASFKASMPGKFNAYNALVAIMICYLIDVPTKDIQNTLPQVHVL-GRGQVMHVSP- 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAH   S E I+  +      ++IVV+G GG R + +R   G++       +I
Sbjct: 340 DYSVLIDYAHNGVSFESIISTVEQYNPNKLIVVYGSGGKRSKTRRYESGEVVAKHGGYSI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T DNPR E    I  +I+ GI  +        +R EAI  A++M  K DV+++ GKGHE
Sbjct: 400 LTADNPRGEKIVDICKDIVVGIDKYHGEYTIIPDRKEAIYHALDMACKGDVVLLLGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T  I  +   +   + +++ E 
Sbjct: 460 TYMIGEDEVTRHFSETEVLEEY 481


>gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
 gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
          Length = 495

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 128/502 (25%), Positives = 221/502 (44%), Gaps = 22/502 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++  +  +LI  L           I+ ++ DSR ++   +F  I G   DGH F   A  
Sbjct: 1   MLATELAQLI-YLKKIEGNLSGVTIDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGT 123
           +GA A V S +   Q        +TP++ V +  + ++L A+  YG       ++ VTGT
Sbjct: 60  KGAVAFVASKSIKNQVG------DTPVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V   +  + ++    +  IG     I         TTP  + L +    L   G 
Sbjct: 114 NGKTTVTHMIDALLEKPNKPTALIGTIYRKIGPKIIQTHNTTPEILTLHETFQELKEIGG 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-- 240
               +E SSH L   R+ G+      FTNL  +H+D H+T + Y +AK  LF +L     
Sbjct: 174 ETCLMEVSSHALQLGRVWGLDYDCVVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVG 233

Query: 241 ---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +    +   D    ++ + +         +  +  F          +     +    
Sbjct: 234 ENSKPKVAVLNADDEQFQMFEYSTPVQVISYGINEEADFKAENIRTENGHTIFELVIQND 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + +    PL G F VYN L A  +    GI    +L+ ++    V GR + V    +  +
Sbjct: 294 ERYLVDMPLLGIFNVYNMLSAIAVAYVYGISIEEILKKVKAFQGVAGRMQSV-DKGQDFQ 352

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVT 416
           + VD+AHT + LE +L ++  I  G+II V G   G+RD   RP +G+IAL  +D  + T
Sbjct: 353 VIVDFAHTPDGLENVLDSLAQIPHGKIITVVGHSGGNRDSSMRPELGRIALTKSDHVVFT 412

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR+E    I   ++  +      +     R EAI  A+++ +  D++++AGKG E  
Sbjct: 413 ADNPRTEPLVNIYEGLLSAVNKKSVSYECIDKREEAIEKALQLASAGDIVLLAGKGVEAY 472

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+    +    + +++  +LG
Sbjct: 473 QIIGE-VEYPYNEIEVVESLLG 493


>gi|62178690|ref|YP_215107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75484869|sp|Q57TD5|MURE_SALCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62126323|gb|AAX64026.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713143|gb|EFZ04714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 495

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 168/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ ++   + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVVYLNQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESRLMGAFNVSNLLLALATLLALGYPLTNLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRTEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
 gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
          Length = 480

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 141/499 (28%), Positives = 218/499 (43%), Gaps = 30/499 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L                       I  +S DSR ++ G I+  + G   DGH FI
Sbjct: 1   MRLSKLFKN---------------APTVNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFI 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI  GA  IV S           + S    + V++    ++  A   Y K  +   + 
Sbjct: 46  DSAIKNGAVCIVHSKEL------LNMASGAVYIRVEDVNDAMNKVARIFYAKPSDKLKMY 99

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTGT+GKS++ + ++ +        +                LTTP  ++L   L+ + 
Sbjct: 100 GVTGTNGKSTITNIIRDMINDKTPCGYIGTIAIKYGDIELQPNLTTPDALFLQSKLADMV 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+   ++E SSHGL QHR+DGI      FTNL  DH+D+H T + YF AK  LF+ L+
Sbjct: 160 RVGMKACALEVSSHGLAQHRVDGISFDCAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLV 219

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   +I+  DD   + +  +  +    V     +        +       Q  +   G 
Sbjct: 220 KENGVSILNRDDEKYEAL--KDCSKARVVSYGINKEADYRAINIKMSSQGTQFDLVYSGH 277

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +     L G F VYN L A       G D   ++E    +  V GR E +    +   +
Sbjct: 278 MYPIKTNLVGNFNVYNLLAAVSALNETGYDLDKIIEKCSHIAQVEGRMERIDCG-QPYNV 336

Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VD+AHT + +E +++  R+IT    R+I VFG  G RD  KR + G++A    D  IVT
Sbjct: 337 IVDFAHTPDGMEKMMQFGRSITMPGHRLIAVFGSAGKRDVHKRKVFGELADKYCDYIIVT 396

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +D+PR EDP++I  +I  GI   +     +R EAI  AI    + D +++ GKG E+   
Sbjct: 397 EDDPRDEDPKEIADQIKSGIQNTLHVFVQDRYEAIHQAISSAQEGDTVLLLGKGDESFIY 456

Query: 475 VTNGEKKMSVDCDIIREIL 493
             NG      D    +E +
Sbjct: 457 RENGRAPWVGDNVAAKECI 475


>gi|2177098|gb|AAB60789.1| UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase [Escherichia
           coli]
          Length = 495

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 172/505 (34%), Positives = 252/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR   V T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRM-KVFTAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGVI 494


>gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
 gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
          Length = 500

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 145/509 (28%), Positives = 232/509 (45%), Gaps = 32/509 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F               ++  NE++ DSR I+ G +F+A+ G + DG  FI
Sbjct: 2   MLLRDLLAPWFIY-----------SGDQSFNELTLDSRAIRRGDVFLALPGYRVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYG------ 111
            +A+  GA  ++V +  + Q     +  N      +      + +S  A++ Y       
Sbjct: 51  DKALDLGAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFA 110

Query: 112 -KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIY 169
                 I+ +TGT+GK+S +  + Q+       +  +G           D+  TT   I 
Sbjct: 111 VTPSLGIIGITGTNGKTSTSQLIAQLVTSLRRKAAVMGTLGNGLWGELVDSGNTTADAIT 170

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  A
Sbjct: 171 LMRQLHEFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYATA 230

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIH 286
           K  LF          ++  DD      +    +   ++     +G      + K      
Sbjct: 231 KQSLFRFSTLGHG--LLNLDDPVGASWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDD 288

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                T+     +     PL G F + N L A       G D   + E ++ L  V GR 
Sbjct: 289 QGVSTTLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRM 348

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E   T      + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MG+ A
Sbjct: 349 ERFTTAD-NITLVVDYAHTPDAIEQALTALRRHCAGDLWCVFGCGGDRDKGKRPLMGRAA 407

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              AD  +VT DN RSEDP +I ++II G+      + + +RI AI+  + +    D+++
Sbjct: 408 EQYADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDLIL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +AGKGHET      G +    +  + R++
Sbjct: 468 LAGKGHETYQE-AAGVRHNYDERALARQL 495


>gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
 gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
          Length = 487

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 147/504 (29%), Positives = 246/504 (48%), Gaps = 33/504 (6%)

Query: 1   MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +D++Y      +N          +  +N +  DSR +    +FVA+ G   DGH +
Sbjct: 1   MKLLKDILYGVGIVAVNGT-------TDTMVNAICFDSRKVGLDDVFVAVKGTLVDGHSY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I  A+  GA AI+  +          + +    + V N    L++ AS  YG   +   +
Sbjct: 54  IDTALNAGANAIICET------MPVNLVNGITYVQVKNGNAALAIMASNFYGTPSKNLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++++S + Q+ +++G     +     +          TTP  I + K+L+ 
Sbjct: 108 VGVTGTNGKTTISSLLYQLFKKAGYKVGLLSTIKIMIDDKEIKATHTTPDAITINKSLAE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +++ GV    +E SSHG+ Q R++G+      FTNL  DH+DYH+T   Y + K  LF+ 
Sbjct: 168 MNNAGVEFCFMEVSSHGIHQKRIEGLVFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDG 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD     +++             Y      + +        ++     
Sbjct: 228 -LPKTAWALTNIDDKNGAVMLQNTKAKKQTYALKTYADFRAQILENQFSGQLLKID---- 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +    L G+F  YN L        +G++   +L  L +L  V GRF++  +     
Sbjct: 283 --DNELWSKLIGDFNAYNMLAIYATAQLLGLEKMEILRLLSELENVDGRFQYYISGK-NI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L  I  + +G    I V GCGGDRD+ KRP+MG IA +++   +
Sbjct: 340 TAIVDYAHTPDALKNVLNTINALRTGNEDVITVVGCGGDRDKSKRPVMGHIASEMSTKVV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+E P +I  E+  G+        +   NR +AI+TA ++   +D++++AGKGH
Sbjct: 400 FTSDNPRTESPSEILKEVEAGVEAQNTRKVLTIENREQAIKTACQLAQPKDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET    TNG +    D  I++++L
Sbjct: 460 ETYQE-TNGVRIDFDDYKIVKQLL 482


>gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
 gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
          Length = 488

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 246/501 (49%), Gaps = 31/501 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++YK   + +   +          IN +  DSR +Q   +F+AI G+  DGH +I  
Sbjct: 4   LKDILYKVNMKAVTGDTG-------VTINNIHFDSRKVQLNDVFIAIRGSISDGHDYIKN 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A  QGA AIV             + +    + V++T++ L+  ++  Y    E +  + V
Sbjct: 57  AENQGALAIVCEK------IPDEVINGVTYIEVEDTKRALAYISANYYDNPSEKLKLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+++A+ +  +  ++G     +     +  +       TTP  I +   L  ++ 
Sbjct: 111 TGTNGKTTIATLLYDLFTKAGFKCGLLSTVKVMVGNDEHTAIRTTPDSITINSYLKDMND 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GV    +E SSHG+DQHR   +K   G FTNL  DH+DYH+    Y + K R F+E LP
Sbjct: 171 VGVEFCFMEVSSHGIDQHRTTALKFEGGIFTNLSHDHLDYHKDFAEYRDVKKRFFDE-LP 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + A+   DD   + +++             +      + +           + ++  D
Sbjct: 230 ASAFALTNVDDKNGEIMLQNTKAKKHTYALKSFADYKAQILENNFTG------LLLKVDD 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G F  YN L    +   +G+ +  +L  + +L+ V GRF++V +        
Sbjct: 284 QELWTKLIGNFNAYNVLAIYAMADLLGLKTLEILRIISELNSVSGRFQYVISEKEKITAI 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           VDYAHT ++L+ +L+ I +I +     I V GCGGDRD  KRP MG IA  L+   + T 
Sbjct: 344 VDYAHTPDALKNVLETINSIRTRNEELITVVGCGGDRDTTKRPKMGHIASALSTKVVFTS 403

Query: 418 DNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           DNPR+EDP+KI  E+  G+        +   NR +AI+TA +M  + D++++AGKGHET 
Sbjct: 404 DNPRTEDPDKIIEEVEGGVEPQNFKKTMSVTNRKQAIKTACQMAGQNDIILIAGKGHETY 463

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V NGE+    D  I+ E L
Sbjct: 464 QEV-NGERVDFDDLKIVNEFL 483


>gi|330012012|ref|ZP_08307229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328534001|gb|EGF60653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 471

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 156/474 (32%), Positives = 236/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D         P+
Sbjct: 1   MTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  +  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   LS L  QG T  ++E SSHGL QHR+  ++  A  F
Sbjct: 121 GNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +         +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   +      + VDYAHT ++LE  L+  R   SG++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-SAPGKPAVVVDYAHTPDALEKALQAARLHCSGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG +
Sbjct: 418 EGRAEAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLDY-SDRVTVARLLGAV 470


>gi|332098940|gb|EGJ03891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 471

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++ +  V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVFTVPGKPT-VVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|323160117|gb|EFZ46078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli E128010]
          Length = 471

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
 gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
          Length = 483

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 192/500 (38%), Positives = 271/500 (54%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +                 +  I  V++DSR ++ G+ F A+ G+  DG  + 
Sbjct: 1   MKLSQLLGE----------AATAGLGDLDIAGVTADSREVRTGYAFFAVPGHAGDGLGYA 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A+GA  +V   A  +         + P++VV + R  L+  A+R Y + P  + AV
Sbjct: 51  ADARARGASVVVAPRAAEV---------SLPLVVVPDVRASLAHAAARFYPRQPRIVAAV 101

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGTSGKSSV  F++QI    G  +  +G    I         LTTP P+ L + L  L +
Sbjct: 102 TGTSGKSSVVDFLRQIWIALGREAASLGTIGLIDKSGAHYGALTTPGPVALHQTLDELCA 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH+++EASS G+DQ RLDG++L  G+FTN  RDH+D+H+  + YF AKMRLF+ LL 
Sbjct: 162 GGVTHLAMEASSLGIDQRRLDGVRLCVGAFTNFSRDHLDHHRDLEEYFAAKMRLFDTLLQ 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I AD A ++ V       G  +  VG +G+ I L  V       ++T+   G+ 
Sbjct: 222 TGQTAVIDADSAVAERVAAVCAARGLALFDVGAKGRAIELLSVAPSALATRLTLRHAGET 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +D   PL G FQ+ NALV+AG+ IA G     V   L  L   PGR E +G    G  ++
Sbjct: 282 YDVDLPLAGGFQISNALVSAGMAIASGEAPGRVFAALASLRGAPGRLELIGQRD-GAPVF 340

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH  ++L+ +L   R +  GR++VVFG GGDRD+GKRP+MG+IA   ADI +VTDDN
Sbjct: 341 VDYAHKPDALDKVLATARELAKGRLVVVFGAGGDRDKGKRPLMGEIAARAADIVVVTDDN 400

Query: 420 PRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           PRSE+P       + A    G     E G+R  AI TAI  L   D L+VAGKGHE+  I
Sbjct: 401 PRSEEPAMIRAAIVAAARAAGSAQIHEIGDRRAAIETAISWLRDGDALIVAGKGHESGQI 460

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + + +     D  ++   L 
Sbjct: 461 IGD-QVLPFSDRAVVEAALR 479


>gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 491

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 143/501 (28%), Positives = 228/501 (45%), Gaps = 28/501 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L+ L+ K     +    +      ++ I ++  DSR +  G +F  I G   DGH F  
Sbjct: 3   QLRSLLNK-----LPSYEMVGDNNIDQSITDLHMDSREVTQGSLFFCISGYTVDGHDFAT 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QAI +G  AIV     ++           P++ V ++++ +++ +S  Y       L + 
Sbjct: 58  QAIEKGTVAIVAEKDLNVA---------VPVIKVTSSKRAMAIISSAFYDYPSSK-LHLI 107

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYL 177
           G +G +   +    I +    +    G   T+    +D       TTP  + L K  S +
Sbjct: 108 GVTGTNGKTTTTHLIEKILRDAEKNTGIIGTMYMKYKDKEVAVNNTTPESLVLQKGFSTM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
             +GV  V++E SSH L+  R+ G       FTNL +DH+D+H+T + Y  A      +L
Sbjct: 168 VQEGVNVVTMEVSSHALELGRVHGTHFNVAVFTNLSQDHLDFHETMENYARAKGLLFAQL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   K  P  +   D  + ++++    A      +      +   K+          +
Sbjct: 228 GNQFSDKSQPVAVLNRDDDTFDLLETMTAAPIISYGI-KGNADLKASKIQLHEEGTSFNM 286

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S+  +       + G F VYNAL AA      GI    + E L  +  V GRFE V    
Sbjct: 287 SISNESCSVSMKMAGTFSVYNALAAAAAAYVSGIPLQAIGESLSNMDGVAGRFERV-ELE 345

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT +SL+ +L+ I+    G++ VV GCGGDRD+ KRP M  IA +L+D  
Sbjct: 346 EDFHVIVDYAHTPDSLKNVLETIKEFAKGKVSVVVGCGGDRDKTKRPKMAAIAEELSDFV 405

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +T DNPRSEDP  I  ++  G+ G  +     R +AI  AI    K +V+++AGKGHET
Sbjct: 406 YLTSDNPRSEDPVSILKDMESGMKGSSYKVIVERRDAIYEAIRQAKKDEVILIAGKGHET 465

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
              +   E     D  + +E 
Sbjct: 466 YQTIG-KENHFFDDRLVAKEA 485


>gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida GB-1]
 gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1]
          Length = 496

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 158/490 (32%), Positives = 235/490 (47%), Gaps = 22/490 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
             +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    AY
Sbjct: 7   SKLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAV----AY 62

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
             Q  +    +  P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q
Sbjct: 63  EEQGATVLPLTEVPLIPVKGLIAQLSDVAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQ 122

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                G     IG   T      Q  RLTTP PI +   L  L  QG   V++E SSH L
Sbjct: 123 ALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSHAL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q R+  ++      TNL RDH+DYH + +AY  AK +LF     +     +  DDA+ +
Sbjct: 183 EQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNL--DDAFGR 240

Query: 255 EVMKRAHNAGCRVLSVG--------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            +                            +  ++     +  + TI     +      L
Sbjct: 241 RLAADFARRPSVDHIDTRLLSYSLENPDASLFCREAAFSDDGVRATIVTAQGERILRSQL 300

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F + N L A    +A+      +L+   +LH   GR + +G   +   + VDYAHT 
Sbjct: 301 LGRFNLSNMLAAVATLLALDYALDEILKVTPQLHGPVGRMQRLGGGDKPL-VVVDYAHTP 359

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP+
Sbjct: 360 DALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPQ 419

Query: 427 KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +I  +I  G            R EAI   I      DV+V+AGKGHE    + NGE+   
Sbjct: 420 RIFDDIRPGFARPVSVEFVAGRGEAIAQLIASAAANDVIVLAGKGHEDYQEI-NGERHDF 478

Query: 484 VDCDIIREIL 493
            D     + L
Sbjct: 479 SDLTEAEKAL 488


>gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 550

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+   LI       +    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  +
Sbjct: 58  MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 112

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAI +GA+ IV S    +         N P++ V+NT + +++ A   YG   + +  +
Sbjct: 113 DQAIGKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 163

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++QI +    ++  IG     I         TTP  I   + L+ +
Sbjct: 164 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 223

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L
Sbjct: 224 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 283

Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             K         A++  DD   +E     + A   +         I+ + V    +  + 
Sbjct: 284 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 341

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +SV G        L G+F VYN L A     A GI    +++ LEK+  V GRF+ V  
Sbjct: 342 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 400

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +  G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ + 
Sbjct: 401 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 460

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGH
Sbjct: 461 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 520

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E   I+    K    D +   + L L
Sbjct: 521 EDYQIIGR-TKHHFDDSEEAAKALAL 545


>gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 510

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 231/479 (48%), Gaps = 18/479 (3%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  + ++  DSR  Q G +F+A+ G++  G     +A+A+GA A++   A       A
Sbjct: 26  GLDVPLRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEALARGAVAVLWEPA---PGVEA 82

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGL 142
            +    P + V    + L   A R +G       ++ VTGT GK+SV+ F+ Q   +   
Sbjct: 83  PVDLGVPCVAVPGLGQRLGEIADRFFGHPSGAMKLIGVTGTDGKTSVSQFLAQTLYQESG 142

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
               IG           +   TTP  + L + L+ L  +GV +  +E SSH L Q R++G
Sbjct: 143 RCGVIGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVRYTVMEVSSHALVQGRING 202

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             L     TNL RDH+DYH + +AY  AK RLF    P    AI+  DDA+ +++     
Sbjct: 203 AALDIAVLTNLSRDHLDYHDSMEAYAEAKARLFRW--PGLETAILNLDDAFGRKLAAELA 260

Query: 262 NAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
               ++L  G        + +  + V    +    ++            L G F V+N L
Sbjct: 261 EREVQILGYGLAAASGEIEQVRGESVEYRPDGLAFSVVTPWGSGRLETGLLGAFNVHNLL 320

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                 + +G+     LE L  +  VPGR E   +  +G  + VDYAHT  +L  +L+ +
Sbjct: 321 AVLAALLQLGLSLTDALERLTHVRTVPGRMERF-SGGKGATLVVDYAHTPAALAQVLQAL 379

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR+  VFGCGG+RD GKRP+M + +   AD  ++T DNPR EDP+ I  E++ G 
Sbjct: 380 RMHCEGRLWCVFGCGGNRDPGKRPLMARASEQFADRVVLTSDNPRHEDPQDIAREVMTGF 439

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                  ++ +R  A+  A       D+++VAGKGHETV IV + E++   D D+ R +
Sbjct: 440 ERPAEVHQELDRQAAVEWAWSHAAAGDLVLVAGKGHETVQIVGD-EQRPFSDRDLARRL 497


>gi|255505595|ref|ZP_05347097.3| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
 gi|255266835|gb|EET60040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
          Length = 524

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 139/502 (27%), Positives = 227/502 (45%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E +           + ++ ++ +DSR ++ G +F  I G   DGH + 
Sbjct: 38  MKLTKLLERVEYECV-------QGNTDIEVTDIVNDSRKVREGCLFFCIKGAVADGHKYA 90

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +   +GA          +      +  +  ++ V ++R  ++L A+  YG   E   ++
Sbjct: 91  AEVAQKGA-------GVLVVQDDVQVPGDVTVIKVADSRYAMALIAAAWYGHPAEKLKVI 143

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I + +G     IG   + I         TTP    + K  + +
Sbjct: 144 GITGTKGKTTTTYMIKSILEAAGHKVGLIGTIEAIIGDKVIPASNTTPESTTIQKYFAEM 203

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G   V +E SS GL  HR  G     G FTNL  DHI      +          + +
Sbjct: 204 AEAGCDCVVMEVSSQGLMLHRTVGFTFEIGIFTNLEPDHIGP---AEHENFEDYLRCKAM 260

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISV 295
           L K+    I+  D    E +   H         G +  F     + V             
Sbjct: 261 LFKQCRHGIFNADDAHLEAILEGHTCDVETYGFGEKADFRASEAQLVSKPGYLGIAYHVT 320

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             ++F     +PG+F +YN+L A  +C   G++   ++  L+K  V  GR E +  +   
Sbjct: 321 GKRNFFVEIDIPGKFSIYNSLAAIAVCDYFGVEEEKMIAALKKAKV-KGRIEMIKVSDE- 378

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++    GR++ VFGCGG+R + +R  MG+++   AD  I+
Sbjct: 379 FTLMIDYAHNAMSLESLLTTLKEYNPGRLVCVFGCGGNRSRARRFEMGEVSGKYADFTII 438

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+PE I A+I  GI      +I+  +R EAI  AI      DV+V+AGKGHE 
Sbjct: 439 TSDNPRYEEPEAIIADIETGIAKTDGKYIKITDRKEAIAYAIHHGQPGDVIVLAGKGHED 498

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    +  +I+EIL
Sbjct: 499 YQEIC-GVKHPMDERVLIKEIL 519


>gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
 gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
          Length = 496

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 142/499 (28%), Positives = 245/499 (49%), Gaps = 21/499 (4%)

Query: 8   YKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            +   ++I+ +         + + I +++ DSR    G +F+ +VG   DGH +I +A +
Sbjct: 2   ERTLQDVISHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAAS 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
            GAEA++V                  ++ V +T++ ++  A   Y    + +  + +TGT
Sbjct: 62  LGAEAVLVEKDVP-------PVPGLVMIRVKSTQETMTELAPWFYDYPAQKMRMIGITGT 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++  + ++ +   +G     IG  + +     + +  TTP  + L + L  ++  G 
Sbjct: 115 NGKTTTTNILRTLLTNTGHKVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGC 174

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +V +E SSH L  +R+ GI+    + TN+ +DH+D+H+T + Y  AK  LF  L     
Sbjct: 175 DYVVMEVSSHALALNRVAGIEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRK 234

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                  +          +    +V++ G  +   ++  +        ++++     + D
Sbjct: 235 KGKTAIFNMDDASSPLIMNRVKTKVMTYGKARTNDVYPIRFHVGAKHMELSLHTPEGNMD 294

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GEF VYN + A    +A G+    ++  L+    VPGRF+ +        + VD
Sbjct: 295 LRLHITGEFNVYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGRFQLIDAGQ-PFTVIVD 353

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + L+ +L+  R IT GR+  VFGCGGDRD  KRPIMGK+AL+LADI +VT DNPR
Sbjct: 354 YAHTPDGLDNVLRTARQITKGRLWAVFGCGGDRDAKKRPIMGKLALELADILVVTSDNPR 413

Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           SEDP+ I  +I  G              +R EAI+ AI     +DV+++AGKGHE   I+
Sbjct: 414 SEDPDTIIRDIETGFSDNPQHKEIYTISDRREAIQFAISHARPEDVIMIAGKGHENYQIL 473

Query: 476 TNGEKKMSVDCDIIREILG 494
            +       D +++R+   
Sbjct: 474 KD-RTIHFDDGEVVRDFFR 491


>gi|309796075|ref|ZP_07690487.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
 gi|308120317|gb|EFO57579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
          Length = 471

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
 gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
          Length = 495

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 230/480 (47%), Gaps = 19/480 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V  DSR I+ G +FV I G   D H FIP     GA A++          +  + 
Sbjct: 23  VEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLTQRE------NVDVP 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +   +L V +    L +     Y        ++ +TGT+GK++ +  V+ I + +G    
Sbjct: 77  AGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTTTSYLVRAILRAAGRRVG 136

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TTP  + + + L+ + ++G+  V +E SSH LDQ R+ GI+ 
Sbjct: 137 LVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAGIEF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHN 262
               FTNL +DH+DYH+T + Y  AK RLFE +      A   A      +   + RAH 
Sbjct: 197 DTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDAAGAVMRAHT 256

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               +     Q   +  + V    +   + +    ++      + GEF VYN L AAG  
Sbjct: 257 TCPVLSYGVTQQAALTARDVRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVLAAAGAA 316

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A GI   ++   LE    VPGRFE V        + VDYAHT + +E +L+  R +T G
Sbjct: 317 RAEGIGYDVIRAALEGFTGVPGRFELVRAGQ-DFSVIVDYAHTPDGMENVLRTARAVTRG 375

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------ 436
           RIIVVFGCGGDRD+ KRPIMG+I  ++AD+  +T DNPR+EDP  I  E+  G       
Sbjct: 376 RIIVVFGCGGDRDRTKRPIMGRIGAEMADVVYITSDNPRTEDPAAILDEVEAGALPVLGG 435

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             + +  +R  AI  A+      D +V+ GKGHET  I+  G      D +   E +  +
Sbjct: 436 KPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEGTI-HFDDRETAAEAIRSV 494


>gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
 gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
          Length = 479

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 142/503 (28%), Positives = 240/503 (47%), Gaps = 37/503 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D    D                E ++ E++ +S+ +  G IF AI G K DG+ FI
Sbjct: 1   MKLKDFFNTD---------------SEVEVGEITQNSKLVVPGDIFFAIKGAKVDGNDFI 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+++GA A+V +     +          P   VD+    ++  A + Y    +++  +
Sbjct: 46  DDAVSKGAVAVVSTEPAKKKYP-------VPYFQVDDIDLAMAKAAVKFYKNPSDDMFFI 98

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176
            +TGT GK+S++  ++ I   +G+    IG  +             TTP+ +YL   +  
Sbjct: 99  GITGTKGKTSISYLLESIFNEAGIPCSVIGTINYRINGEVFAKAPNTTPAALYLYYMIDK 158

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + S G   V +E SSH L+  R+ G+      FTNL RDH+D+H+  + YF AK +LF+ 
Sbjct: 159 MRSAGTKVVIMEVSSHALELKRVFGLNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDS 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L+    PA     +   +  ++ A     +   +          K           ++  
Sbjct: 219 LIENSKPAKTAIVNIDDQYGLRLADKIKAKTTLIPVSLVEAENVKESLNG------VTFS 272

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K       L G+  +YNA+ A    +A G+D    L+ + KL  +PGR + V    +  
Sbjct: 273 YKGESASINLLGKHNLYNAVFAVKAAMAYGVDLQTALKGIAKLQGIPGRMQRV-NKGQPF 331

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VD+A+T+ SL    + +    +G II VFGCGGDRD+ KRP+MG  A   +   ++T
Sbjct: 332 YVFVDFAYTTESLMKAYETLEPYKNGNIITVFGCGGDRDRTKRPLMGLAACQNSSHVLLT 391

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +DNPR+ED ++I  +I++G+     +    +R  AI+T I +  + D+L++AGKGHE   
Sbjct: 392 NDNPRTEDQQQIFNDILNGMKGYTNYEIVQDRALAIKTGISLCKENDILLIAGKGHEDYQ 451

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+  G+     D +     L  +
Sbjct: 452 ILA-GKTIHFSDRETAETELEKL 473


>gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
 gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
          Length = 483

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 145/478 (30%), Positives = 235/478 (49%), Gaps = 15/478 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  I     +E +   +  DSR I+ G IFVA+ G   DGH +I QA+  GA+ I+VS  
Sbjct: 9   EYEILKDVVKEEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKK 68

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                           + + + R+ L + AS  Y    + +  +  T       +     
Sbjct: 69  IEAVFP-------VKYIWIKDLRRKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIE 121

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                  + +IG     I     +   TTP  + + K       +G+ ++ +E SSH L 
Sbjct: 122 SILGSDKTARIGTVEYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEVSSHALA 181

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+D ++     FTNL  DH+D+H+T + YF AK +LF  +        +   D     
Sbjct: 182 LGRVDMLEFDVSMFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYG- 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             KR  +    +    +    +  K +    + Q+V I+++         + G + VYN 
Sbjct: 241 --KRLSSEFGGISYGMHNEGRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVYNV 298

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  + + +GI+  ++L+ +++L   PGR+E V        + VDY+HT ++LE ILK+
Sbjct: 299 LGALSIALLLGIERDIILDKIKELKGAPGRYELVNCGQ-DFTVIVDYSHTGDALENILKS 357

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I  +  G+II VFGCGGDRD  KR +MG+IA  L+DIAIVT DNPR+EDP KI  +++ G
Sbjct: 358 INELKKGKIITVFGCGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEG 417

Query: 436 IP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +     I + +R  AI  A+++   +D++++AGKGHET  I+   +K    D +I R 
Sbjct: 418 MKGKNHIVEEDRDIAISKAVKLAEAKDIILIAGKGHETYQILGR-KKIHFDDREIARR 474


>gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
 gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
          Length = 499

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 230/506 (45%), Gaps = 27/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+         Q             N+++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWLHYAGAQS-----------FNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSA----TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            +A+  GA A++V +  + Q               I     +R+  ++ A R    H   
Sbjct: 51  EKALDLGAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSA 110

Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170
                 + +TGT+GK+S +  + Q+    G  +  +G           D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             LF           +  A  A     +K            G+Q    + K         
Sbjct: 231 QSLFRFNTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGV 290

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             T+     + +   PL G F + N L A       G D   + E ++ L  V GR E  
Sbjct: 291 SATLVWPEDETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MGK A   
Sbjct: 351 TTAN-NITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQY 409

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++AG
Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAG 469

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KGHET      G +    +  + R++
Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494


>gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
 gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
          Length = 487

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 231/476 (48%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF           +  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPNLNCRVINL--DDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G            R +AI   I      DV+V+AGKGHE    + +G+++   D
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHEDYQEI-DGKRQPFSD 471


>gi|33239864|ref|NP_874806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|46576944|sp|Q7VDG4|MURE_PROMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33237390|gb|AAP99458.1| UDP-N-acetylmuramyl tripeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 503

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 150/500 (30%), Positives = 243/500 (48%), Gaps = 16/500 (3%)

Query: 11  FPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL   + I   +  ++  I+ +S DSRHI  G +F  + G K DG +F  +A+A GA 
Sbjct: 5   LHELFKAVGIHRQIVGKDLIIDSISCDSRHISKGGLFFGLPGEKVDGGIFWRKALASGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
           A V+    + +D  +    +   +V D    ++   AS  + +    I  + VTGT+GK+
Sbjct: 65  AAVIGEEAAQKDPPS--NEDMVFVVSDPVAHWMGEMASVFWKRPSSQIDLIGVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ +C++SG++S   G   +     ++    TT     L   L+   + G     
Sbjct: 123 TTTYLIEHLCKQSGITSALFGTLYNRWPKHSEVAIHTTAFGDVLQSQLAQAVAAGARLGV 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R+ G       FTNL +DH+DYH++ +AYF +K  LF+  L ++  +  
Sbjct: 183 MEISSHALDQRRVAGCSFSGAVFTNLTQDHLDYHESMEAYFQSKALLFQAPLLRDKESCS 242

Query: 247 YADDAYSK------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             +           ++ K    A      +      + L  +   +   +  +       
Sbjct: 243 VVNIDDPWGLRLSKQLNKSCWRASLEKRVIDSIQPELFLTDLNITNKGIEGVLHSPFGQG 302

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F+  L G F + N L A G+ I  G+    +L  ++    VPGR E +        + V
Sbjct: 303 PFVSSLIGRFNLMNMLEAVGILIQHGVSLQELLPSIKSFSGVPGRMEQIKVEGDLPVVLV 362

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + L+  L  +R+  SGR+  VFGCGGDRD+ KRP+MG IA   AD   +T DNP
Sbjct: 363 DYAHTPDGLKNALIALRSFGSGRLFCVFGCGGDRDRSKRPLMGAIASKFADHVTLTSDNP 422

Query: 421 RSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R+EDP++I  +++ GI      I + +R  AI+ AI      D++++AGKGHE   I+  
Sbjct: 423 RTEDPQQILNDVLPGIATETELIIEIDRANAIQMAIMKALPGDIVLIAGKGHENYQILGL 482

Query: 478 GEKKMSVDCDIIREILGLIL 497
              +   D +I ++IL L L
Sbjct: 483 ETIE-FDDREIAKKILHLKL 501


>gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 515

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 149/499 (29%), Positives = 227/499 (45%), Gaps = 26/499 (5%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F +   + +I  ++ DSR +     F+AI G++ DG  FIPQAI+ GA  I+  +  
Sbjct: 14  LAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQTDD 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
           S       +R ++ I+ +    + LS  A+  Y    + +  +AVTGT+GK+S    + Q
Sbjct: 74  SEAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQLLTQ 133

Query: 136 ICQRSGLSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +    G  S  IG   +                 TTP  I +   L+      V H + E
Sbjct: 134 LKDALGTRSASIGTLGSSVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHAAFE 193

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L  +   K        
Sbjct: 194 ASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLCQPGLKAVVLNAND 253

Query: 249 DDAYSKEVMKRAHNAGCR------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           D++   + +                           Q +                 +   
Sbjct: 254 DESNKWDNVADNAITRIWTGIDESADGALFRAHNNPQSRHCFATNASYHSGGCSFELVSS 313

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PL G+F + N L A G  +A G     V++ +  +  VPGR E         
Sbjct: 314 WGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDAVVKAVNAITPVPGRMEVFPVPGA-A 372

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE +L + +  T+G++  VFGCGGDRD GKRP+MG+ A   AD  ++T
Sbjct: 373 NLVVDYAHTPDALEKVLLSAKFHTAGKVWCVFGCGGDRDTGKRPLMGQAAEAGADAIVIT 432

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DN RSEDPE I  +II G+      +   +R +AIR  +   +K D+++VAGKGHE   
Sbjct: 433 TDNSRSEDPESIAQDIITGLKDSSLAVSIPDREQAIRHCLAHADKSDIIIVAGKGHEDYQ 492

Query: 474 IVTNGEKKMSVDCDIIREI 492
           I+ + +K    +  ++  +
Sbjct: 493 IIGD-KKTNYNERAVVARL 510


>gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Bradyrhizobium sp. ORS278]
          Length = 486

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 209/498 (41%), Positives = 279/498 (56%), Gaps = 22/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+        +Q  + P      +++ +++DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLHDLLG-------DQAGLDPRVAA-VEVSGLAADSRAVRPGDLFFALSGTKTDGTRFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A+   +       +       P + + N R+ L+L ASR++ + P  I AV
Sbjct: 53  A-------AAVAAGAIAVAGHEAPAGDLPVPFVSLPNPRRALALAASRVFPRQPATIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI Q  G ++  IG    IS        LTTP PI L + +  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQSLGHNAASIGTVGLISDKRTVYGSLTTPDPIALHRQIDEITQ 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +L+P
Sbjct: 166 DGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFRDLVP 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
              PA+I AD   S EV+  A   G R+++VG  G      I L         QQ+ +  
Sbjct: 226 PGGPAVISADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQLELQH 285

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+      PL G FQ+ NALVAAGL I  G D   V E LEKL    GR E VG    G
Sbjct: 286 CGRITFLRLPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGRLELVG-EHNG 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I++DYAH  ++L   L  +R     +++VVFG GGDRD GKRP+MG+IA   AD  IV
Sbjct: 345 APIFIDYAHKPDALAKALHALRPYAQRKLVVVFGAGGDRDSGKRPLMGEIAAAGADRVIV 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSE+P  IRA I+   PG  E G+R EAIR AI  L   D LV+AGKGHET  I+
Sbjct: 405 TDDNPRSENPAAIRAAILAAAPGAREIGDRAEAIRVAISELQPGDALVIAGKGHETGQII 464

Query: 476 TNGEKKMSVDCDIIREIL 493
            +       D + + + L
Sbjct: 465 GD-TVLHFSDHEAVADAL 481


>gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
 gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
          Length = 495

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 158/485 (32%), Positives = 239/485 (49%), Gaps = 15/485 (3%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+   +          I  +  DSR++Q G +FVA+ G   DG  ++ QA A GA A +V
Sbjct: 16  LMGTGADLAAGLPNIDIAGLCLDSRNVQPGELFVALRGGSHDGRAYLSQAAAAGAVAALV 75

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVAS 131
                 ++         P +V+   R  L   A R Y      +   AVTGT+GK++V+ 
Sbjct: 76  EDELPGEEPP------LPCVVIPGLRHKLCEIAGRYYRDPSRQMHVAAVTGTNGKTTVSQ 129

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
              Q+ + +G     IG      +   QD+  TTP  I + + L+  + Q V  VS+E S
Sbjct: 130 LFAQLLRSAGYDCGVIGTLGASLTAGVQDSVHTTPDSIAMQEILASWAGQAVPFVSMEVS 189

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH LDQ R++G+ + +  FTNL RDH+DYH   ++Y  AK RLF         AI+ +DD
Sbjct: 190 SHALDQGRVNGLDIDSAIFTNLTRDHLDYHGDMESYGAAKARLFAF--ESLRTAILNSDD 247

Query: 251 AYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            +S  +  R       +          + L  +       Q+ +     +     PL G+
Sbjct: 248 PFSDVLAGRMSLGVAVLRYGLNDASADVRLSNLRLHSAGMQMRLESPWGNGTLNCPLLGK 307

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N L A    +  G+    V+   E L  VPGR E +  ++ G  + VDYAHT ++L
Sbjct: 308 FNAVNLLAALTAALQAGVPFDAVMTAAESLQPVPGRMEPIH-SAAGPLVVVDYAHTPDAL 366

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L  +R    GR+I VFGCGGDRD+GKRP+M +    +AD A++T DNPRSEDP  I 
Sbjct: 367 RHVLIALREQCKGRLIAVFGCGGDRDKGKRPLMAEAVAAIADRAVITSDNPRSEDPLAII 426

Query: 430 AEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           A+I   + G +    +R +AI  AIE    +D +++AGKGHE   I+ +       D  +
Sbjct: 427 ADIEAAMAGEYHVCADRGDAIAMAIESAAPEDCVLIAGKGHEDYQIIGDQRFT-FSDSAV 485

Query: 489 IREIL 493
            +++L
Sbjct: 486 AQQVL 490


>gi|300984507|ref|ZP_07176999.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
 gi|300306676|gb|EFJ61196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
          Length = 471

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 241/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSSVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|161504755|ref|YP_001571867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866102|gb|ABX22725.1| hypothetical protein SARI_02878 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 495

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 166/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEARDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   + + 
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-SAAG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KATVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG+I
Sbjct: 471 YQIVGTQRLDY-SDRVTAARLLGVI 494


>gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 487

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 152/499 (30%), Positives = 237/499 (47%), Gaps = 23/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+          +        +  ++ +  DSR +  G +FVAI G + DG  +I
Sbjct: 1   MKLAELL---------TMLPTSFSVPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI    +A   +        +   R    ++     R+ LS  A   +G   E +  +
Sbjct: 52  DAAI----DAGAAAIIAEAPGMAVEQRRGVVVIGFSGVREHLSRIAGNFFGHPSEKMNLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   + Q+ +  G+ +  IG T +         R TTP  + + + L+ L
Sbjct: 108 GVTGTNGKTSVTHIMAQLAKALGMEAAVIGTTGSGLIGRLLPERHTTPDAVTVQQRLATL 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G   V++E SSH L Q R++ +   A + TN+ RDH+DYH T + Y  AK RLF + 
Sbjct: 168 LAEGAELVAMEVSSHALIQRRVEALHFAAAAITNISRDHLDYHGTMENYVAAKQRLFADF 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +       ADD       +         L+       +    V         +++ +G
Sbjct: 228 GVQNRVVN--ADDDTLSHWQQDDLADLWVSLNASPNEPCLQATGVQFHEQGSVFSLNWQG 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PL G F VYN L A  + + +    A + +   +L  VPGR E    N     
Sbjct: 286 ESCVVETPLLGRFNVYNLLCAVAVLLKLNKPLADIGKACGRLQPVPGRMEAFHNNQSPL- 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L  +L  +R    GR+  VFGCGGDRD+GKRP MGK+A D AD+ +VTD
Sbjct: 345 VVVDYAHTPDALHQVLSALRLHCKGRLWCVFGCGGDRDRGKRPQMGKVAADYADVVVVTD 404

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+E  E+I  +I+ GI    +      R EA+  A++   K DV+++AGKGHE   +
Sbjct: 405 DNPRTEPAEQIIEDILTGIADKTQVKVWPGRREAVIRAMQEAGKDDVVLLAGKGHEDYQV 464

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +         +  ++ E L
Sbjct: 465 IGTQRIDY-NERAVVSEWL 482


>gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
          Length = 503

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 175/513 (34%), Positives = 247/513 (48%), Gaps = 37/513 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DLI    PE             +R I  ++ DSR ++ G++FVAI G + DGH FI 
Sbjct: 3   NLKDLIA-VLPE------KTVTGPVDRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIQ 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV- 120
           +A+           A ++    A      P + V ++R  L L AS  YG     ++ V 
Sbjct: 56  EAV--------ARGAAAVVGERAPAVEGVPYVQVPSSRTALGLLASAFYGHPSARLVLVG 107

Query: 121 -TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT+GK++    V+ + + +G  +  IG   + I   +     TTP    L K L+ + 
Sbjct: 108 VTGTNGKTTTTHLVRWVLEAAGHPTGLIGTVHNIIGGRSLPVERTTPEAADLQKLLAAMR 167

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+THV +E SSH L   R+ G     G FTNL +DH+D+H + + Y  AK RLF  L 
Sbjct: 168 DAGLTHVVMEVSSHALTLQRVAGCAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLG 227

Query: 239 PKESP---------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             E P         A+I ADD +   +  R+            Q   +  + V       
Sbjct: 228 RNEIPGTVKPGPKAAVINADDPWGTFMADRSSAPVITYGI--RQAADVTARDVVVEPGGV 285

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  +     +      L G F VYNAL AAG  +A+GID A V   LE L  VPGR E +
Sbjct: 286 RFVLGTRDGEVPVRLRLTGRFNVYNALAAAGAGLALGIDPATVARGLESLPAVPGRLERI 345

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
               +   + VDYAHT + LE +L  +R +   GR++ VFGCGGDRD+GKRP MG IA  
Sbjct: 346 DRG-QPFTVLVDYAHTPDGLENVLSTVREMAGQGRVLCVFGCGGDRDRGKRPQMGAIAAR 404

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  ++T DNPRSEDPE I  +I  G+       +     R  AIR  +E+    DV+V
Sbjct: 405 LADYTVLTSDNPRSEDPEAIIDDIEAGVRQVPGAAYERVTERAAAIRRVLELARPGDVVV 464

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +AGKGHE   I  +       D ++    L  +
Sbjct: 465 IAGKGHEDYQIFAD-RTIHFDDREVAATALEAM 496


>gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 487

 Score =  306 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 157/476 (32%), Positives = 232/476 (48%), Gaps = 14/476 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +  AL+ L   G   V++E SSH
Sbjct: 120 AQALDALGQRCGIVGTLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF           +  DD +
Sbjct: 180 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPNLNCRVINL--DDDF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGLKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 298 SNVLAAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 356

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 357 LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             G            R +AI   I      DV+V+AGKGHE    + +G+++   D
Sbjct: 417 RPGFVTADKVRFIEGRGQAIAELIASATVDDVVVLAGKGHEDYQEI-DGKRQPFSD 471


>gi|300981122|ref|ZP_07175368.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|301048477|ref|ZP_07195502.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300299663|gb|EFJ56048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300409024|gb|EFJ92562.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|315294720|gb|EFU54063.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 153-1]
          Length = 471

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 240/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G  S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEPSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|323157848|gb|EFZ43951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli EPECa14]
          Length = 471

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
 gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
          Length = 490

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 142/501 (28%), Positives = 235/501 (46%), Gaps = 28/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +  ++       +  L +      + +I  VS+ S  ++ G +F+   G K D H  I
Sbjct: 1   MNISTIVSN-----LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRKGEKFDSHEII 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ I +GA A+VV     L         + P + V ++R F +  AS  + +  +++L  
Sbjct: 56  PEVIEKGAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFDEPWKDVLTF 106

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
             T       + V      +  G     +      I   +  + +TTP  I +  A+   
Sbjct: 107 GVTGTNGKTTTTVMIYHMLTSLGEKGSVLTTAVKRILENSYYDDITTPDAITILSAMKEN 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G    ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ L
Sbjct: 167 KEGGGKFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLL 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +  +       +    +    ++     +     L  +       +  +    
Sbjct: 227 KDDGIAILNES-------LADTFNRKSRKITFGTSKNADYRLGNIEVNWEGTRFVLETPD 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356
                     G+F  YNA  A      +G D   +   LE    V GRFE   G    G 
Sbjct: 280 GLLRVFTKAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGL 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VD+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T
Sbjct: 340 NVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            D+PR EDPE+I  ++I GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   
Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQ 459

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+   +K    D +++ EI+ 
Sbjct: 460 IIDEEKKVPFQDREVVEEIIR 480


>gi|311280935|ref|YP_003943166.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
 gi|308750130|gb|ADO49882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
          Length = 495

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 165/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +G +FVA++G++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------NAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +    +  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSGRLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   LS L+
Sbjct: 114 VTGTNGKTTTTQLLAQWAQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLSGLA 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 GQGATLAAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  +
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G   A +L    +L  V GR E       
Sbjct: 292 SSWGNGEIDSRLMGAFNVSNLLLALATLLALGYPLAGLLSTAARLQPVCGRMEVFA-APG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+ +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIITDILAGMLDAGHAKVMEGRAEAVTNAIMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D      +LG++
Sbjct: 471 YQIVGNRRLDY-SDRVTAARLLGVV 494


>gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
 gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
          Length = 509

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 143/495 (28%), Positives = 229/495 (46%), Gaps = 28/495 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            + +   I  +  DSR I+  ++FVA+ G+  DGH FI +AI  GA+ I+          
Sbjct: 14  KEGKSFVIKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMIISEKNIDT--G 71

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                S+   + V+  RK L + AS  YG +P++ + + G +G +   +    +      
Sbjct: 72  QYQSASDVTFIQVEGIRKKLGIIASNYYG-YPQDKIKIIGITGTNGKTTSSFFLENILEK 130

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++      + I     +   TTP  + L K +      G  +  +E SSH L+  R+D +
Sbjct: 131 TARIGTTGNRILDKEFETVNTTPESLELIKLIDKSVKSGADYFIMEVSSHALEIGRVDML 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K  +  FTNL +DH+D+H+T + YFNAK ++F  L   ++       +   +   K    
Sbjct: 191 KFDSAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDDEYGAKIYLE 250

Query: 263 AGCRVLS----------------VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +                               +     K    +      + F   L
Sbjct: 251 NNAKNFISISVKNEDADIWGDILNYTNNGMKVKINLKNYLEKYGKNLKNTENVYRFEIDL 310

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE+ +YN L      +++GI+   +++ LE +  VPGRFE +  N    RI VD+AHT 
Sbjct: 311 VGEYNLYNILGCIASALSLGIEMDFIVKKLETMPAVPGRFETIK-NDLDVRIVVDFAHTD 369

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           + L  + K ++ IT  R+I +FG GGDRD  KRP M + A+  +D  I+T DNPR+E+P 
Sbjct: 370 DGLLNVGKTLKQITDNRVITIFGAGGDRDHEKRPKMAQAAIKFSDFIILTSDNPRTENPT 429

Query: 427 KIRAEIIHG-------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           KI A+I  G          ++   +R  AI+    ML K D L++AGKGHET  I+   E
Sbjct: 430 KILADIEKGLIGEKFPFNRYLIIADRERAIKYGTRMLEKGDSLLIAGKGHETYQIIGT-E 488

Query: 480 KKMSVDCDIIREILG 494
           K    D +I++E L 
Sbjct: 489 KIHFDDREIVKEALE 503


>gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 534

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 148/511 (28%), Positives = 248/511 (48%), Gaps = 27/511 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL DL+          L +      + +I+ +S DSR  + G +F  I G K+DGH ++ 
Sbjct: 33  KLADLVKPL-------LKVKVFGKLDGEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLE 85

Query: 62  QAIAQGAEAIVVSSAY-SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             +++G  A+V      S +      + + P+++V ++RK  ++ AS+ Y    +++   
Sbjct: 86  DVLSKGVSAVVAQYDCLSSEQKKLLTQIDIPVILVTDSRKAFAILASKYYNYPGDSLRVT 145

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSY 176
             T  K    +        S     + G   TI++   D       TTP P+ L + L  
Sbjct: 146 GVTGTKGKTTTVNLIDKLLSEGKEVKTGMIGTINARIDDQEEKQPTTTPGPLELNELLGR 205

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + + G +HV++E SSH + Q R+ G+ L    +TNL  +H+DYH     Y   K R+F  
Sbjct: 206 IENSGASHVTLEVSSHAISQLRIAGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSF 265

Query: 237 LLPKESP------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              K         A+I  DD Y+  ++++                   +  +       +
Sbjct: 266 QGLKPEKNDKPKLAVINLDDKYASYMLEQPAVQVLTHGFDENAHVKGKI--INTAETFTE 323

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + I+    +F    PL G+F  YN L A  + +  GI ++ +   LE+   +PGRFE + 
Sbjct: 324 LKITSPWGNFTVKTPLIGKFNCYNLLAAITVALFEGIPASKIQTILEQPINIPGRFERID 383

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  + VD+AHT++SL+ +L+++R + SG+I VVFGCGG+RD+ KRP MG+ A DL 
Sbjct: 384 LGQE-FTVVVDFAHTTDSLQEVLQSLRQMVSGKIGVVFGCGGERDKSKRPKMGRAASDLG 442

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D   +T DNPR+EDP+KI  +I+ G           + +R +AI  ++    + D +++A
Sbjct: 443 DKIFITSDNPRAEDPQKIVQDILSGCDVNNNEKIQIELDRAQAIEKSLNWAREGDAVLIA 502

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GKGHE    + NG+     D +I RE L  +
Sbjct: 503 GKGHEATQEI-NGKVINFDDREIAREKLKKM 532


>gi|313646532|gb|EFS10993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
          Length = 490

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 169/491 (34%), Positives = 249/491 (50%), Gaps = 14/491 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +
Sbjct: 3   DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFV 133
                D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++    +
Sbjct: 63  KDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLL 122

Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q  Q  G +S  +G               TT S + +   L+ L  QG T  ++E SSH
Sbjct: 123 AQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 182

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E       AII ADD  
Sbjct: 183 GLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEV 240

Query: 253 SKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  + +  +A        ++    G+++   +V    +   +  S    D +    L G
Sbjct: 241 GRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMG 300

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            F V N L+A    +A+G   A +L+   +L  V GR E   T      + VDYAHT ++
Sbjct: 301 AFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDA 359

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I
Sbjct: 360 LEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAI 419

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N       D
Sbjct: 420 INDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SD 478

Query: 486 CDIIREILGLI 496
              +  +LG I
Sbjct: 479 RVTVARLLGGI 489


>gi|311742803|ref|ZP_07716612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314431|gb|EFQ84339.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 503

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 146/493 (29%), Positives = 220/493 (44%), Gaps = 12/493 (2%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +   E+  QL + P    +  +  ++  +     G +F A+ G +  G  +  QA  +G
Sbjct: 14  SRGLVEVARQLGVRPPPV-DPSVTGLTLGTSDCCPGDLFAAVPGGRAHGAAYADQAAERG 72

Query: 68  AEAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A A++   A +   D +       P +VVD+ R+ L    + L+  HP +     G +G 
Sbjct: 73  AVAVLTDPAGAAVLDATEGAARRLPRVVVDDPREVLGRLGAWLHD-HPTSAFTTLGVTGT 131

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
               +         G +   IG   T        + LTTP    L    + +  + V   
Sbjct: 132 QGKTTTTYLAESAVGGTVGVIGTIGTRIGGRPVASSLTTPEAPALQALFAVMREEAVDVC 191

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH L + R+DG       F NLGRDH+D+H     YF+AK  LF         A+
Sbjct: 192 AMEVSSHALVKGRVDGFAFDVAVFLNLGRDHLDFHDDLADYFDAKAMLFTP--DHARRAV 249

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD + + ++ R         + G    +                +   G + D   P
Sbjct: 250 VNVDDDHGRRLLDRTDLPVTTFSTDGRAADWRAANVRPHRLGTDLEVLGPAGLEIDLSVP 309

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG F V NAL         G D A +   +     VPGR E V          VDYAH 
Sbjct: 310 LPGRFNVSNALAVVAALAPEGHDPADLAAGIAASPGVPGRMERVDRGQ-PFTAVVDYAHK 368

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++  +L  +R +T GR+++V G GGDRD GKRP+MG+ A   AD+ +VTDDNPRSE P
Sbjct: 369 PDAVTAVLTALRPVTPGRLVMVIGAGGDRDHGKRPLMGEAAARHADLVVVTDDNPRSERP 428

Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
             IRA+++ G        +E G+R EAI  A+      D +VVAGKGHE    + +G   
Sbjct: 429 AAIRADLLAGARGGPAEVVEIGDRREAIAHAVAGARLGDTVVVAGKGHEQGQEI-DGVVH 487

Query: 482 MSVDCDIIREILG 494
              D  ++ E+LG
Sbjct: 488 PFSDRAVLEELLG 500


>gi|307629659|gb|ADN73963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UM146]
 gi|315285169|gb|EFU44614.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 110-3]
          Length = 471

 Score =  306 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 495

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 167/495 (33%), Positives = 239/495 (48%), Gaps = 14/495 (2%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   L+ +  Q  ER + E++ DSR   AG +FVA+VG+  DG  FIPQAIAQG  AI
Sbjct: 4   RNLRALLAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSV 129
           +  +    +D     +   P++ +    + LS  A R YG+      ++ VTGT+GK++ 
Sbjct: 64  IAEADGVAEDGCVREQHGVPVVYLSRLNERLSALAGRFYGQPGDDVQLIGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  Q  G     +G            +  TT S + +   L  L+ +G T V++E
Sbjct: 124 TQLLAQWAQLLGERGAVMGTVGNGLLGQVYPSENTTGSAVDVQHMLRNLADEGATLVAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +  +A  FTNL RDH+DYH     Y  AK RLF      E      A
Sbjct: 184 VSSHGLVQNRVLALPFVASVFTNLSRDHLDYHGDMAQYEQAKWRLFSTHHSGEKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD   +  + +  +A    L       + G+++  ++V        + I           
Sbjct: 242 DDEVGQRWLAKLPDAVAVTLADALPQAWPGRWLAARRVDYHDGGATIDIDSSWGCATLHS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L GEF V N LVA    +A+G     +     +L  V GR E      +   + VDYAH
Sbjct: 302 RLMGEFNVSNLLVALATLLALGYPLEALSAVSGQLQPVCGRMEVFQAAGKPT-VVVDYAH 360

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE  L   R    G++  +FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+
Sbjct: 361 TPDALEKALLAARLHCQGQLWCLFGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEE 420

Query: 425 PEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +I+ G+           R EA+  AI     QDV++VAGKGHE   +V N    
Sbjct: 421 PRTIINDILSGMLDPGMVQAIPGRAEAVTAAIMQAAPQDVILVAGKGHEDYQLVGNRRLD 480

Query: 482 MSVDCDIIREILGLI 496
              D   +  +LG++
Sbjct: 481 Y-SDRVTVARLLGVV 494


>gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
 gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
          Length = 471

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 146/472 (30%), Positives = 223/472 (47%), Gaps = 10/472 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +F+AI G++ DG  +I QAIAQG  A+V  +     +         P+
Sbjct: 1   MTLDSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +++    LS  A   Y        ++ VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLNDLNSRLSALAGAFYQHPVEKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                     +  TT S + +   L+ L  Q  T  ++E SSHGL Q R+  +   A  F
Sbjct: 121 GNGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAAVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRV 267
           TNL RDH+DYH   ++Y  AK  LF     K             + + + +    +  + 
Sbjct: 181 TNLSRDHLDYHGDMESYEAAKWLLFSTHQTKAQIINADDDVGLKWLQRLPQACAVSMEQR 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +   +QG ++    V        +  +    +     PL G F V N L+A    + +  
Sbjct: 241 IPEQWQGPWLQATAVEYHDRGATIQFTSSWGNGTLESPLMGAFNVSNLLLAMATLLTMDY 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +LE    L  V GR E   +      + VDYAHT ++LE  L   R    G++  V
Sbjct: 301 SLEQLLEASSSLSPVCGRMEVF-SAPNKPTVVVDYAHTPDALEKALAAARLHCKGQLWCV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444
           FGCGGDRD+GKRP+MG  A + AD  ++TDDNPRSE+P  I  +I+ GI      +    
Sbjct: 360 FGCGGDRDKGKRPLMGAAAEEWADKVVITDDNPRSEEPLDIINDIMAGILDSSRVLAIPG 419

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+ ++I   N  DV+V+AGKGHE   I+ +       D   +  +LG++
Sbjct: 420 RAEAVTSSIMQANADDVIVIAGKGHEDYQIIGHRRLDY-SDRLTVARLLGVL 470


>gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 489

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 131/473 (27%), Positives = 212/473 (44%), Gaps = 22/473 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I +++ DSR +Q   +F+ I G   DGH +  +A+  GA  IV             +   
Sbjct: 23  ITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGATVIVTER-------LLQLDGE 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V NT + L + A++ +    +   ++ VTGT+GK+SV+  +  I    G  S   
Sbjct: 76  IAQVIVKNTTRTLGILAAKFFDYPSKDIMMIGVTGTNGKTSVSGIIHNILIGLGEKSALS 135

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G      +    ++  TT   +   + +    S+G   + +E SSHGL   RL G+    
Sbjct: 136 GTIGFNLNGVLYESANTTSDSLNTQQMIFRAKSEGCRAMVMEVSSHGLALGRLAGVDYDV 195

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             FTNL  DH+D+H T + Y N K        + L K    ++ ADD +S+         
Sbjct: 196 AVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLNADDPWSERYAGMTPYP 255

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                                 +   Q  +      F     L GEF +YN L A  +  
Sbjct: 256 IWTYGLHN--NAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGEFNIYNVLAATAVFY 313

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TS 381
           A G    +++E +E L  V GR E +  +    +I++DYAHT +++E  +          
Sbjct: 314 ARGFPIEVIIEQIEMLPPVKGRMEKI-DSDLPIQIFIDYAHTPDAIEKAINAAMPYKKPE 372

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGF 439
            ++I + G GG RD+ KRP M + A  +AD  I+T D+PR E+ + I  ++  G+    +
Sbjct: 373 NKLIFLVGTGGGRDKTKRPTMAEKAS-VADYVILTTDDPRYEEFDSITGDLAKGMKHKNY 431

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              G+R EA+R A+ + N  D+++ AGKGHE   I+ N  K    D  I  E 
Sbjct: 432 ACIGDRAEAVRHAVSVANPGDIIIFAGKGHEDYQIIEN-TKYPHSDAKIAIEA 483


>gi|300905494|ref|ZP_07123258.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300923133|ref|ZP_07139193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|301303815|ref|ZP_07209935.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|301330134|ref|ZP_07222803.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|300402644|gb|EFJ86182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300420588|gb|EFK03899.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|300840942|gb|EFK68702.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|300843881|gb|EFK71641.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|315253159|gb|EFU33127.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 85-1]
          Length = 471

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|315300014|gb|EFU59252.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 16-3]
 gi|323190233|gb|EFZ75509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|324012248|gb|EGB81467.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 60-1]
          Length = 471

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 241/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
 gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
          Length = 492

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 150/492 (30%), Positives = 236/492 (47%), Gaps = 20/492 (4%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L   L    +      +NE+  DSR ++ G +FVAI G++ DG  FI +AI  GA AI
Sbjct: 2   RDLHTILKHLEIDAARLMVNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIENGASAI 61

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +       +          P+ +V    K L + AS+ Y +  +++  + VTGT+GKS+ 
Sbjct: 62  IADRLCEFESDFE------PLYLVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKSTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            + +  + Q     +  IG             + TTPS + L + LS L ++    V++E
Sbjct: 116 TAMIAHLAQFCHTQAAIIGTLGYGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLVAME 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL QHR+D     A  FTNL RDH+DYH   Q+Y +AK+ LF +        I+  
Sbjct: 176 VSSHGLVQHRVDQCYFKAAVFTNLSRDHLDYHGDMQSYGDAKLMLFRD--FDADHVILNQ 233

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD  +++ +++                   +F++   V          ++    D     
Sbjct: 234 DDGQAEQWIEKYSFNSLICYGRKNLAPKNAQFVYFSDVQYSATGISAQLTTSWGDVAIKS 293

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL GEF +YN   A    +A+G     ++   E L  V GR +     S      VDYAH
Sbjct: 294 PLFGEFNLYNLTAALATLLALGYPLTQLVAGCEYLQPVAGRMQAFTAPSMPTC-VVDYAH 352

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++L + L+ ++    G +  VFGCGGDRD+GKR +M + A   AD  I+T DNPRSED
Sbjct: 353 TPDALALALQALQQHVPGGVSCVFGCGGDRDKGKRVLMAQAAEQFADKVIITSDNPRSED 412

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  ++  G+        + +R  AI+ AI+     +V+++AGKGHE   I+ +  + 
Sbjct: 413 PNDIINDVAAGLEHPENAHLEADRGAAIQFAIDNAKAGEVILIAGKGHEDYQIIGD-TRI 471

Query: 482 MSVDCDIIREIL 493
              D   +++ L
Sbjct: 472 DFCDRQFVQQQL 483


>gi|300919640|ref|ZP_07136131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300931788|ref|ZP_07147088.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
 gi|300413280|gb|EFJ96590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300460448|gb|EFK23941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
          Length = 471

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis
           HAW-EB4]
          Length = 488

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 232/499 (46%), Gaps = 23/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++DL+   F     +           + +E++ DSR +Q+G +FVAI G + DG  FI
Sbjct: 1   MLIRDLLAPWFHYSGAE-----------EFSELTLDSRAVQSGSLFVAIPGYQVDGRKFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILA 119
             A  +GA A++V +    +       +   IL     R+  +L A      +    I+ 
Sbjct: 50  TAAFERGASAVLVHTDSPEEHGKLVHEAGLQILFFQLNRQISALAAQAYPLSQVRPQIIG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+SV   + Q+    G  +  +G           D+  TT  PI L K L    
Sbjct: 110 VTGTNGKTSVTQLIAQLQLLQGKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQNFE 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G    ++E SSHGL Q R++ +      FTNL RDH+DYH T  AY  AK RLF+   
Sbjct: 170 QRGADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMDAYGAAKKRLFQFAT 229

Query: 239 PKESPAIIYADDAY--SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                A +   D     + +   A +        G     I+ K           T+   
Sbjct: 230 L---RAGLINCDDALGREWLTDLASDKVIGFSIKGDSKAAIYCKDCHFHDGGVSCTLVWP 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PL G+F + N L A G    +G D   ++   EKL  V GR E   T     
Sbjct: 287 TGEAKLNSPLLGDFNLSNLLAALGALYLLGEDMHALVALAEKLEPVAGRMERFTTKDE-V 345

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +++E  LK +R    G++  VFGCGGDRD+GKRP+M   A   AD  +VT
Sbjct: 346 TLVVDYAHTPDAIEQALKALRVHCKGKLWCVFGCGGDRDRGKRPMMAASAEQFADRVMVT 405

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DN RSEDP  I A+I+ G+      + + +R  AI+  +      D++++AGKGHET  
Sbjct: 406 SDNSRSEDPNAIIADILAGLQHPKNALTQVDRQTAIKDVVAQAVAGDMVLLAGKGHETYQ 465

Query: 474 IVTNGEKKMSVDCDIIREI 492
            + NGE+    +    + I
Sbjct: 466 EI-NGERLNYDERAFAKAI 483


>gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
          Length = 499

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 155/506 (30%), Positives = 243/506 (48%), Gaps = 26/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DLI      L++ L     +   ++++ +++DSR    G  + A+ G   DGH FI
Sbjct: 2   MTLEDLIG-----LLDPLEYLAGRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
             A+++G   +V        +   ++      + V + R  L+  A+  +G       ++
Sbjct: 57  SDALSKGVGVVVCE------EIPVSVDERCCYIRVADCRTALAAAAAEWFGHPASSLRVI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A  ++ +  RSG+ +  IG   + I   +     TTP  + L      +
Sbjct: 111 GVTGTNGKTTTARLIRTMLDRSGVKTGYIGTGQALIGDESIVLERTTPEAMDLHALFRKM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G   V +E SSH L  HR +GI      FTNL  +H+D+H T   Y +AK  LF + 
Sbjct: 171 VNCGCEAVVMEVSSHALVLHRTEGISFYGAVFTNLTPEHLDFHATMDEYGSAKQILFRQ- 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQV 291
           +  +   I+ ADDA+   +      +     +VG Q            + + A  +   V
Sbjct: 230 VAPDGFGIVNADDAWGSMMAGAFSGSRLFCCTVGSQVFGCTNGSVVRARDIEARMDGSSV 289

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+ + G+     F LPG F V N L      +A+G+        +  +  V GR E V  
Sbjct: 290 TVQMNGRACRASFLLPGLFNVMNMLEILSAGVAMGLSLETAAASVADVVSVEGRMEPVSD 349

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDL 409
           +       VDYAHT ++LE ++  +  +       IVVFGCGGDRD+ KRP+MG IA   
Sbjct: 350 DGGLFSAIVDYAHTPDALEKVIGALNEVRPADSSLIVVFGCGGDRDRSKRPLMGGIAAAG 409

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  I+T DNPRSEDPE+I   I  GI    F+   +R +AI   ++ML   D+L++AGK
Sbjct: 410 ADHVILTSDNPRSEDPEEILDAIASGITEGSFMRIADRADAIVCGVQMLRPGDLLLIAGK 469

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE     + G K    D +++   L
Sbjct: 470 GHECYQE-SGGRKSYFSDREVVARAL 494


>gi|327255063|gb|EGE66666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 471

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 243/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV+++AGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLIAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|300900884|ref|ZP_07119021.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
 gi|300355648|gb|EFJ71518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
          Length = 471

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLSDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   + +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLSDLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|300821910|ref|ZP_07102054.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|300525510|gb|EFK46579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|324017754|gb|EGB86973.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 117-3]
          Length = 471

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 550

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 159/506 (31%), Positives = 243/506 (48%), Gaps = 29/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+   LI       +    + P    +  +  ++ D+R +Q G +F+A+VG   DGH  +
Sbjct: 58  MQASQLINS-----LKFKQVQPALTTDFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLV 112

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAI +GA+ IV S    +         N P++ V+NT + +++ A   YG   + +  +
Sbjct: 113 DQAIGKGAKIIVASKPLDV---------NVPVIYVENTERAMAILADVFYGAPSQKMRMI 163

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++QI +    ++  IG     I         TTP  I   + L+ +
Sbjct: 164 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGTMYRKIKDEKLPTANTTPDAITTQRTLAAM 223

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V++E SS  L   R+ GI      FTNL +DH+D+H+T   Y  AK  LF +L
Sbjct: 224 RDAGVETVAMEVSSIALVLGRVWGIDYDIAVFTNLTQDHLDFHKTMAKYTEAKAMLFAQL 283

Query: 238 LPKE------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             K         A++  DD   +E     + A   +         I+ + V    +  + 
Sbjct: 284 GNKYSADGTNKVAVLNTDDPVGREF--EQYTAAHVLTFGLKPDAMINAQNVEIKSHGTEF 341

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +SV G        L G+F VYN L A     A GI    +++ LEK+  V GRF+ V  
Sbjct: 342 DLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAYASGIPEDQIIKSLEKVTGVKGRFQSVP- 400

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +  G  + VDY+HT + L   L+ I+   +  I  V GCGGDRD+ KRP M KIA++ + 
Sbjct: 401 SHTGVSVIVDYSHTPDGLLNALETIQDFATKDIYCVVGCGGDRDKTKRPKMAKIAVEHST 460

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPR+EDP  I  +++ G+P        +R  AI  AIE     DV+++AGKGH
Sbjct: 461 KPIFTSDNPRTEDPTMILNDMVAGVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKGH 520

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           E   I+    K    D +   + L L
Sbjct: 521 EDYQIIGR-TKHHFDDSEEAAKALAL 545


>gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
 gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea]
 gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
          Length = 492

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 238/504 (47%), Gaps = 25/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+        ++             N +S DSR I  G +F+A+ G+  DG  FI
Sbjct: 1   MQLNDLLAPWLHYSGSES-----------FNGMSLDSRAITVGDLFIAVPGHLVDGRKFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT-PILVVDNTRKFLSLFASRLYGKHPE--NI 117
             A  QGA A +V +    +       ++    ++     + LS   ++ Y   P+   +
Sbjct: 50  QAAFEQGAVAALVHTDEPTEHGQVLSEASASLQILFFQLNQELSAIGAQAYPLAPQRLKL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK+S+   + Q+    G  +  +G           ++  TT  PI +A  L  
Sbjct: 110 IGVTGTNGKTSITQLMAQLVALQGKQASLMGTLGNGLWGDLVESGNTTADPITIAAQLQD 169

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G    ++E SSHGL Q+R+  +      FTNL RDH+DYH T QAY +AK RLF+ 
Sbjct: 170 FDLAGADLCAMEVSSHGLIQNRVAAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKF 229

Query: 237 LLPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              + S   +  DD   ++ +   + A + G  + S       I+ +     H      +
Sbjct: 230 SSLQSSLINL--DDEVGRQWLSEEQEAKHLGFSICSAHADAASIYTQDNHLHHQGVMAML 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                      PL G F + N + A G    IG D   ++  +  L  V GR E   T +
Sbjct: 288 VWPEGRAKLASPLLGSFNLSNLVAALGALYLIGYDMQALVASVPLLTPVAGRMERFTTAN 347

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  I VDYAH+ +++E  LK +R    G++  +FGCGGDRD+GKRP+M + A   AD  
Sbjct: 348 -GVTIVVDYAHSPDAIEQALKALRGHCEGQLWCLFGCGGDRDKGKRPLMAQAAETYADKV 406

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++T DN RSE PE I  +I+ G+      + + NR +AIR  + +    D++++AGKGHE
Sbjct: 407 MITSDNVRSESPEAIIEDILVGLEAPERVLTQVNREQAIRQVVALAKPGDLVLLAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   V  G +    +  + + + G
Sbjct: 467 TYQEVA-GVRFEYDERALAKSLAG 489


>gi|301026107|ref|ZP_07189582.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
 gi|300395678|gb|EFJ79216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
          Length = 471

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 164/474 (34%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|300949897|ref|ZP_07163860.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|300955951|ref|ZP_07168284.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|301646397|ref|ZP_07246279.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|312970179|ref|ZP_07784361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|300317171|gb|EFJ66955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|300450729|gb|EFK14349.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|301075367|gb|EFK90173.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|310337677|gb|EFQ02788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|315616136|gb|EFU96755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 3431]
 gi|323171248|gb|EFZ56896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|325496021|gb|EGC93880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia fergusonii ECD227]
          Length = 471

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 243/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|300938480|ref|ZP_07153220.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
 gi|300456549|gb|EFK20042.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
          Length = 471

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 241/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKASDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATQLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLAELLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|83648527|ref|YP_436962.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636570|gb|ABC32537.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 508

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 247/501 (49%), Gaps = 18/501 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  +   EL+  ++  P    +  ++++  DSR + +G +FVA  G   +G  ++  A+A
Sbjct: 4   IAQQRLAELLKGIAEVPAAL-DCWLSDIQQDSRKVTSGALFVAAEGVSSNGAQYVEDALA 62

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGT 123
           +GA A++              + +   + + N R  + + A R +G+  H   ++ VTGT
Sbjct: 63  RGARAVL----LPGTRQHVYEKGDVVFIELANVRPVVGIIAHRFFGQATHRMKVVGVTGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGV 182
           +GKSSV  +V Q+ +  G+S+  +G        +      TTP  + L + L+ L  +G+
Sbjct: 119 NGKSSVTHYVAQMAEGLGMSAAVVGTLGYGRPDSLKATTHTTPDAVSLHRVLAELRDEGI 178

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++E SSH LDQ R  G+       TN+ RDH+DYH T +AY  AK RLF     +  
Sbjct: 179 ELVAMEVSSHALDQDRAAGVNFDVAVLTNITRDHLDYHGTLEAYAEAKKRLFLSDSVRWK 238

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKD 299
                 DD Y     +          S+G Q +    +  + +    +     + +    
Sbjct: 239 V--FNQDDPYGARWAQELQGPKTLTFSIGKQDQTAADVCAEDIHFDADGMSFALDLGATR 296

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L GEF + NAL A     A+ ++   V + L +L  V GR + +  +     + 
Sbjct: 297 EPARLALVGEFNLSNALAACAAMSALKVEPQAVRQQLARLTPVAGRMQRLHEDKAPT-VL 355

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++LE+ LK  R    GR+  VFGCGGDRD GKRP+MG +A   AD  ++TDDN
Sbjct: 356 VDYAHTPDALEVALKAARRHCPGRLWCVFGCGGDRDPGKRPLMGAVAAQYADEVVLTDDN 415

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR EDPE I A+I+ G      F     R +AIR A+E   ++DV+++AGKGHE    + 
Sbjct: 416 PRGEDPESIVAQIVKGAEQGAHFQVVRPRNDAIRFAVEHAAQEDVILLAGKGHEDYQEIQ 475

Query: 477 NGEKKMSVDCDIIREILGLIL 497
            G +    D  I R+ L  ++
Sbjct: 476 -GRRLPFSDIAIARDCLASVV 495


>gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 495

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 154/481 (32%), Positives = 229/481 (47%), Gaps = 21/481 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V  DSR I+ G +FV I G   D H FIP     GA A++          +  + 
Sbjct: 23  VEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARAGARAVLTQRE------NVDVP 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +   +L V +    L +     Y        ++ +TGT+GK++ +  V+ I + +G    
Sbjct: 77  AGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTTTSYLVRAILRAAGRRVG 136

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +         TTP  + + + L+ + ++G+  V +E SSH LDQ R+ GI+ 
Sbjct: 137 LVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRARGMDTVVMEVSSHALDQGRVAGIEF 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRAH 261
               FTNL +DH+DYH+T + Y  AK RLFE +      A   A    D  +  VM+   
Sbjct: 197 DTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAGKTAVINADDAAGPVMRAHT 256

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                   V  Q      + +    +   + +    ++      + GEF VYN L AAG 
Sbjct: 257 TCPVLSYGVTQQAALT-ARDIRLAQDGMTMRLVHGDEECALTLHITGEFNVYNVLAAAGA 315

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A GI   ++   LE    VPGRFE V        + VDYAHT + +E +L+  R +T 
Sbjct: 316 ARAEGIGYDVIRAALEGFTGVPGRFELVRAGQ-DFSVIVDYAHTPDGMENVLRTARAVTR 374

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GRIIVVFGCGGDRD+ KRPIMG+I  ++AD+  +T DNPR+EDP  I  E+  G      
Sbjct: 375 GRIIVVFGCGGDRDRTKRPIMGRIGAEMADLVYITSDNPRTEDPAAILDEVESGALPVLG 434

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
              + +  +R  AI  A+      D +V+ GKGHET  I+  G      D +   E +  
Sbjct: 435 GKPYEKLVDRRTAIFDAVRAARPGDSVVILGKGHETYQILKEGTI-HFDDRETAAEAIRS 493

Query: 496 I 496
           +
Sbjct: 494 V 494


>gi|238918673|ref|YP_002932187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868241|gb|ACR67952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Edwardsiella ictaluri 93-146]
          Length = 469

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 161/472 (34%), Positives = 229/472 (48%), Gaps = 14/472 (2%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR   AG +FVA+VG+  DG  FIPQAIAQG  A++  +    +D S       P++ 
Sbjct: 1   MDSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVY 60

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++   + LS  A R YG+      ++ VTGT+GK++    + Q  Q  G +   +G    
Sbjct: 61  LNRLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGN 120

Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                   +  TT S + +   L  L+  G T V++E SSHGL Q+R+  +   A +FTN
Sbjct: 121 GLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAASAFTN 180

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--- 268
           L RDH+DYH   + Y  AK RLF      E      ADD      + +  +A    +   
Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFSTHHSGEKIVN--ADDEMGLLWLDKLPDAVAVTVTGV 238

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G+ G+++    V        +       +      L GEF V N LVA    +A+G 
Sbjct: 239 LPEGWAGRWLAACSVAYHDGGATIAFDSSWGEGTLNSRLMGEFNVSNLLVALATLLALGY 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +     +L  V GR E          + VDYAHT ++LE  L   R    G++  +
Sbjct: 299 PLAALCAASVQLQPVCGRMEVF-QAPAKPTVVVDYAHTPDALEKALLAARLHCQGQLWCL 357

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+P  I  EI+ G+      +    
Sbjct: 358 FGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLAMAIPG 417

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+  A+     QDV++VAGKGHE   +V N       D   +  +LG++
Sbjct: 418 RAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 468


>gi|262044871|ref|ZP_06017914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037840|gb|EEW39068.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 471

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 155/474 (32%), Positives = 236/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   +G +F+A+ G++ DG  +IPQAIAQG  AI+  +    +D         P+
Sbjct: 1   MTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  +  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   LS L  QG T  ++E SSHGL QHR+  ++  A  F
Sbjct: 121 GNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHCGQAIVNADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +         +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   +      + VDYAHT ++LE  L+  R   SG++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-SAPGKPAVVVDYAHTPDALEKALQAARLHCSGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R +A+  A+    + DV++VAGKGHE   IV N       D   +  +LG +
Sbjct: 418 EGRAKAVTNAVMQAKENDVVLVAGKGHEDYQIVGNRRLDY-SDRVTVARLLGAV 470


>gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS195]
 gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS195]
 gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS678]
          Length = 499

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 149/506 (29%), Positives = 228/506 (45%), Gaps = 27/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+         Q             ++++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWLHYAGAQS-----------FSDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSA----TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            +A+   A A++V +  + Q               I V   +R+  ++ A R    H   
Sbjct: 51  EKALDLSAAAVLVHTDDADQHGKVLHSDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSA 110

Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170
                 + +TGT+GK+S +  + Q+    G  +  +G           D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             LF           +  A  A     +K            G+Q    + K         
Sbjct: 231 QSLFRFSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGV 290

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             T+     +     PL G F + N L A       G D   + E ++ L  V GR E  
Sbjct: 291 SATLVWPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T +    + VDYAHT +++E  L  +R    G +  VFGCGGDRD+GKRP+MG+ A   
Sbjct: 351 TTAN-NITLVVDYAHTPDAIEQALNALRRHCVGDLWCVFGCGGDRDKGKRPLMGQAAEQY 409

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++AG
Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAG 469

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KGHET      G +    +  + R++
Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494


>gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           reducens MI-1]
 gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfotomaculum reducens MI-1]
          Length = 486

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 168/502 (33%), Positives = 247/502 (49%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+            I  +   E  I  +  DSR    G IFVA+ G + DGH +I
Sbjct: 1   MLLKELLQAIPV-------ITIIGNPEIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+A             + +    + +    + V ++RK L+L A + YG   +   ++
Sbjct: 54  ENAVA-------AGVTAVVYETEIVLPTGVTGVQVSDSRKALALMADQFYGHPSKKLSMV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    +  I +++ +    IG     I   A     TTP  + L K L+ +
Sbjct: 107 GVTGTNGKTTTTHLIAAIWRKARVKPGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV  V++E SSH L  +R+ G+      FTN+ +DH+D+H T + Y  AK +LF   
Sbjct: 167 LDEGVKGVAMEVSSHALALNRVAGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFTTD 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +     AII ADD  ++E+ K +   G        Q   I  K +           S   
Sbjct: 227 IQ---YAIINADDPAAEELKKISR--GKVYTYGIDQAADIRAKDIQVTARGVSFMASGPW 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +      L G F VYNAL A    +A+G  S  V+  LE +  V GRFE +    +   
Sbjct: 282 GNHQLNLKLTGRFNVYNALAAYTTGMALGFGSDTVVSALEDVPGVAGRFELL-DKGQNFA 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE IL   R IT GR+I VFGCGGDRD+ KRPIMG+IA   +D+ +VT 
Sbjct: 341 VVVDYAHTPDGLENILTTARQITKGRLITVFGCGGDRDRTKRPIMGEIAARYSDVPVVTS 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR+E+P+KI  +++ G+   I         +R EAI  AIE+  + DV+V+AGKGHE 
Sbjct: 401 DNPRTEEPQKIIQDVVEGVNRVIAPEDYLVLVDRREAINKAIELAQEGDVVVIAGKGHED 460

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+    K    D     + L
Sbjct: 461 YQIIGT-TKYSFDDRKEAAKAL 481


>gi|300816123|ref|ZP_07096346.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
 gi|300531330|gb|EFK52392.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
          Length = 471

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E      +   + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVFTALGKPT-VVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
 gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
          Length = 499

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 150/506 (29%), Positives = 229/506 (45%), Gaps = 27/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+         Q             N+++ DSR I+ G +F+A+ G+K DG  FI
Sbjct: 2   MLLRDLLAPWLHYAGAQS-----------FNDLTLDSRAIRRGDVFLALPGHKVDGRQFI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSA----TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            + +  GA A++V +  + Q               I     +R+  ++ A R    H   
Sbjct: 51  EKVLDLGAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSA 110

Query: 117 I-----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYL 170
                 + +TGT+GK+S +  + Q+    G  +  +G           D+  TT   I L
Sbjct: 111 TTSLGVIGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITL 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L    +QG +  ++E SSHGL Q R+D +      FTNL RDH+DYH   ++Y  AK
Sbjct: 171 MRQLHDFEAQGASVCAMEVSSHGLVQGRVDAVSFDVAVFTNLTRDHLDYHGDMESYAAAK 230

Query: 231 MRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             LF           +  A  A     +K            G+Q    + K         
Sbjct: 231 QSLFRFSTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGV 290

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             T+     + +   PL G F + N L A       G D   + E ++ L  V GR E  
Sbjct: 291 SATLVWPEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERF 350

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T +    + VDYAHT +++E  L  +R   +G +  VFGCGGDRD+GKRP+MGK A   
Sbjct: 351 TTAN-NITLVVDYAHTPDAIEQALNALRRHCAGDLWCVFGCGGDRDKGKRPLMGKAAEQY 409

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  +VT DN RSEDP +I  +II G+      + + +RI AI+  + +    DV+++AG
Sbjct: 410 ADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVILLAG 469

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KGHET      G +    +  + R++
Sbjct: 470 KGHETYQE-AAGVRHDYDERALARQL 494


>gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
 gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
          Length = 488

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 151/505 (29%), Positives = 231/505 (45%), Gaps = 33/505 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+D++YK     I              +  +  DSR       F+A+ G   DGHLF
Sbjct: 1   MKNLKDILYKVSANKI-------FGETNIVVKNLVFDSRKAACNTAFIALKGVAIDGHLF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I +AI  GA  +V        DF    +     + V +T+  L++ AS  Y      I  
Sbjct: 54  IDKAINLGAIVVVCE------DFPKEQKEGVTYIQVSDTKIALAIMASNFYDNPSSKIPL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++VAS + Q+ +++G     +     +          TTP  + +   L  
Sbjct: 108 IGVTGTNGKTTVASLLYQLFKKAGYKVGLLSTVKVLVDETEFKATHTTPDSVTINSYLDK 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   GV    +E SSHG+ Q R +G+    G FTNL  DH+DYH T  AY N K   F+ 
Sbjct: 168 MIDAGVDFCFMEVSSHGIHQKRTEGLTFAGGVFTNLSHDHLDYHDTFAAYRNVKKHFFDT 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK +  +   DD   + +++ +                + + +         +  +  
Sbjct: 228 -LPKSAFVLANIDDKNGRFMLQNSKAIKKTYALKTAADYKVKILEKQLSGTLIALDGTE- 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L G F +YN          +G++   +L  L  L  V GRFE+V  +  G 
Sbjct: 286 -----VWIKLIGVFNIYNVTAVIATAELLGLEKLEILTILSALESVSGRFEYV-ISQDGV 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L+ I  I  G  ++I V GCGGDRD+ KRP M  IA  L++  I
Sbjct: 340 TAIVDYAHTPDALKNVLETINDIKIGAEKVITVLGCGGDRDKTKRPKMAHIASQLSNQVI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+E+P+ I  ++  GI        +   +R +AIRTA +     D+L++AGKGH
Sbjct: 400 FTSDNPRTENPQTILEDMEAGIALQNYKKTLTILDRKQAIRTACKFSEPGDILLIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E     TNG +    D + ++    
Sbjct: 460 ENYQE-TNGVRIHFDDLEEVKNCFN 483


>gi|332098132|gb|EGJ03105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 471

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
 gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
          Length = 492

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 136/497 (27%), Positives = 239/497 (48%), Gaps = 25/497 (5%)

Query: 6   LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++ ++  E I++++        +  I  +++ S  ++ G++F+   G++ D H    + I
Sbjct: 1   MLVRNLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEII 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
            +GA  +VV    S+         + P +VV ++R   S+ ++  Y         + +TG
Sbjct: 61  KKGASFLVVEHPISV---------DFPHVVVSDSRLAESILSALYYDDPFNKLLTIGITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           T+GK++ A     + +  G +   +G             +  TTP  I + KA+     +
Sbjct: 112 TNGKTTAAHLFHHVLKTLGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDR 171

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              H  +E SSH L   R++ +K    + TN+ RDH+D+HQT   Y   K+ +F+ L   
Sbjct: 172 SGKHFVMEVSSHSLAMKRVESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIFDLLKEF 231

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +    D +   V KR      +V+    +     +             +     + 
Sbjct: 232 GIAVV---SDEFEHIVNKRV----KKVIYGMSENSDYRILSAEIDKFGTNFVLKSRFGEH 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIY 359
                +PG    YNA +       +G D   ++E ++    V GRF+F+   +  G  I 
Sbjct: 285 KCSINIPGIHNAYNATLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIV 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD+AH+ ++LE  L   R I SGRII VFG GG  D+GKRP+M ++    +D++I+T D+
Sbjct: 345 VDFAHSPDALEKTLITARKIASGRIITVFGAGGQADKGKRPMMAEVVCRYSDVSIITTDD 404

Query: 420 PRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR EDPE+I  E+  G+P    ++   +R EAI TA+ + N+ D+++VAG+GHE   I +
Sbjct: 405 PRGEDPEEILFEVEKGVPSGSPYLVIPDRKEAIETALTLANRGDMVIVAGRGHEEYQIFS 464

Query: 477 NGEKKMSVDCDIIREIL 493
           +  K    D ++IR+IL
Sbjct: 465 DERKIPFKDAEVIRKIL 481


>gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 496

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 141/484 (29%), Positives = 226/484 (46%), Gaps = 22/484 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  +  +  +++DSR ++ G +FV I G   D H FIP A+ +GA A+V          
Sbjct: 11  LEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVVTQR------- 63

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
              + +     VV + R  LS  A R YG       ++ VTGT+GK++ A  V+ I + +
Sbjct: 64  PWAVPTGIGAAVVPDARLALSALADRFYGHPSRALRMVGVTGTNGKTTTAFLVEAIARTA 123

Query: 141 GLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G +   IG    +         +  TTP P  + + L+ +  +G     +E SSH L+Q 
Sbjct: 124 GKAMGVIGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVMEVSSHALEQR 183

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R D  +     FTNL  +H+DYH   + Y+ AK RLF   L   + A++  DD Y + + 
Sbjct: 184 RTDHCRFDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRG-LQPGAAAVVNIDDPYGRRLA 242

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL-PGEFQVYNAL 316
           +        +     +G  I  + V       +  +     + D   P   G + V NA+
Sbjct: 243 EEIPAGVRTLTYGFSEGADIRAEDVHLTGPGARYRLITPVGEADVEAPHLFGTYNVSNAM 302

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  +A+G      +  L      PGRFE +    +   + VDYAHT +  E +L ++
Sbjct: 303 AAVGAGLALGFSLQDAVAALGTAKGAPGRFERI-DEGQDFTVVVDYAHTPDGFEKLLSDV 361

Query: 377 RTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             I     R+I+VFG  G RD  KRP MG+IA +  D+ ++T+++PR+ED  +I  +I  
Sbjct: 362 ARIKEPGSRVIMVFGSAGQRDPSKRPDMGRIAGEYCDVLVLTEEDPRTEDAMEIARQIAS 421

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           G+           +R+EAIR AI M    D++++ GKG ET   V +       D     
Sbjct: 422 GVARDEVEIHLIEDRVEAIREAIRMARTGDIVLITGKGQETELEVQHPTT-WRGDVVEAV 480

Query: 491 EILG 494
           + L 
Sbjct: 481 DALR 484


>gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 485

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 139/496 (28%), Positives = 241/496 (48%), Gaps = 26/496 (5%)

Query: 9   KDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L   + I   +   E  I  ++ +S+ I  G +F AI G   DGH FI +AI + 
Sbjct: 2   KTIKQLCKGVKILQIVGNEEVNIENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEKK 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A  IV             +      L V ++   ++  A+  +    +   ++ VTGT+G
Sbjct: 62  ARVIVCQQ------LPEILPKEVTFLKVADSTIAMAQIAANYFDHPSQKLKLVGVTGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+++A+ +  + + +      I   +   +    D + TTP  I L + +  +  +GVTH
Sbjct: 116 KTTIATLLYHLFRNTKHKVGLISTIAIYINEQKIDTKNTTPDVITLNRRMHQMVEEGVTH 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSHG+  HR++G+    G FTNL +DH+D+H+T   Y N K + F+  L K++ A
Sbjct: 176 CFMEVSSHGIAMHRIEGLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDT-LKKDAFA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD     +++             Y     ++ +           + +     +   
Sbjct: 235 LTNIDDKNGNFMLQNTQAHKYNYALRTYADFKANILENAFSG------LVLRIGQQEIWT 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+F  YN L      + +G+D   V + + +L  V GRF+    ++    + VDYAH
Sbjct: 289 HLIGQFNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSGRFQ-YFISAGNITVIVDYAH 347

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++L+ +L+ I++I   S  ++ + GCGG+RD+GKRPIM  IA  ++D  I T DNPR 
Sbjct: 348 TPDALQNVLETIKSIKAPSQHLLTLVGCGGNRDKGKRPIMANIATTMSDKVIFTSDNPRE 407

Query: 423 EDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           EDP+ I  E+  G+       ++   +R +AI+ A  + +  D++++AGKGHET   V  
Sbjct: 408 EDPQTILKEMEIGVNPDHQSKYMTITDRRQAIKVACNLAHAGDIILLAGKGHETYQEVK- 466

Query: 478 GEKKMSVDCDIIREIL 493
           G +    D +  + I+
Sbjct: 467 GHRSHFDDLEEAKLIM 482


>gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale
           M104/1]
          Length = 490

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 136/503 (27%), Positives = 223/503 (44%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +   +++           + +I+ +  DSR ++   +FV I G   D H FI
Sbjct: 1   MKLEKLLERMDYKVLAGS-------TDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  + +GA A+VV           T       + VD+TR  L+  ++  +    E I  +
Sbjct: 54  PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDDTRLALACMSAAYFDYPAEKIKTI 106

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +           G+ +  IG   S        +  TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G+  V +E SS  L  HR+ G     G FTNL  DHI  H   +    A     + L
Sbjct: 167 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEH---EHKDFADYMHCKSL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L ++    I+  D    E + + H               +  + V        + +    
Sbjct: 224 LFRQCRLGIFNGDDEHLEGIMKGHTCQVETYGYKSTNNLV-AENVELKKEHGALGVKYHV 282

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               DFD    +PG+F VYN+L A  +C    +D   + E L  + V  GR E V    R
Sbjct: 283 SGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSV-KGRIEIVPVTKR 341

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +R  MG+++  LAD+ +
Sbjct: 342 -YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLADLTV 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E     D++V+AGKGHE
Sbjct: 401 VTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    + ++I +I+
Sbjct: 461 DYQEIK-GVKHHMDERELIADII 482


>gi|159902952|ref|YP_001550296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888128|gb|ABX08342.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 505

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 151/503 (30%), Positives = 249/503 (49%), Gaps = 23/503 (4%)

Query: 11  FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              L+  + +  P+  ++ +I  +SSDSR ++ G +F  + G K++G  F  +A   GA 
Sbjct: 5   LHSLLKAIGLDVPIDLQDPEIKNISSDSRCVKKGDLFFGLPGQKDNGGAFCNEAFLAGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENI--LAVTGTSGK 126
           A VV                  ++VV +   +++   AS  +GK    +  + VTGT+GK
Sbjct: 65  AAVV---GDSARDCIPHDKKNLVVVVPDPVSQWMGEIASVFWGKPSLEMALIGVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ + + SG ++  +G   +    +++ +  TT     L   LS + + G +  
Sbjct: 122 TTTTHLIEHLSKSSGKATALLGTLINRWPKYSEQSIHTTSFGDTLNAQLSQIVASGASLC 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK--ESP 243
           ++E SSH L Q R+ G+      FTNL +DH+DYH++ +AYF AK  LF+  L K  ++ 
Sbjct: 182 AMEVSSHALSQRRVAGLYFSGAIFTNLTQDHLDYHKSMEAYFEAKALLFQSYLIKDGQAR 241

Query: 244 AIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           A++  DD +   + KR      +      ++      + +  +       +  I     +
Sbjct: 242 AVVNIDDQWGFRLAKRLGRNCWKSSLDLKNIQSVRPELFITGIKMTAAGAEGFIHTPFGE 301

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----R 354
             F+ PL G F + N L + G+ +  G     +L        VPGR E V          
Sbjct: 302 GPFMTPLIGRFNLMNLLQSIGVLLQQGFKLDTLLHATATFSGVPGRMEQVKVPVKSDSLP 361

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT + L+  LK +R   SG++I VFGCGGDRD+ KR  MG+IA +++DI I
Sbjct: 362 MPIVLVDYAHTPDGLKNALKAVRPFVSGKLICVFGCGGDRDKSKRSYMGEIAAEISDIVI 421

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VT DNPR+EDP  I  +I+ GIP     I + +R +AI  +I      D++++AGKGHE 
Sbjct: 422 VTSDNPRTEDPMAIIEDILSGIPTTFEAIVELDRCKAIEMSILHAKSNDLIIIAGKGHED 481

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + +K    D +   E L 
Sbjct: 482 YQILGD-KKIYFNDKEAAIEALE 503


>gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 476

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 235/469 (50%), Gaps = 16/469 (3%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + + S  +  G +FVA+ G + DG  FI  A+A+GA  +V       +  +    +  
Sbjct: 17  TGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGARVVVH-----KEGVAVAPAAGV 71

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             L V N  + L + A    G       I+ VTGT+GK++ A  +  +   +GL +  IG
Sbjct: 72  STLAVPNPAQTLGVLARAACGTESRLPRIVGVTGTNGKTTTAHLIHFLLSANGLMTGLIG 131

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                         +TTP  + L   +  +   GV  + +E SSH LDQ R  G+ +  G
Sbjct: 132 TVHCSWPGAKVAATMTTPDCLSLHGIIGRMVRDGVEDLVMEVSSHALDQERTAGLPMAVG 191

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            F+NL +DH+DYH   + YF AK RLF +   + +  ++  DD Y + +  +        
Sbjct: 192 VFSNLTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLVNVDDEYGRRL--KMMRPDLLG 249

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +  +   +  + + A      + IS +G  ++    L G    YN L A G  + +G+
Sbjct: 250 FGLDSEDAELRCRILGAGTEGMTLGISHDGNAWELRTSLVGRHNAYNLLSAVGAGLLLGL 309

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +A      + L   PGR E V  N+R   I++DYAHT ++LE +   ++++   R+I V
Sbjct: 310 TAAQCACLSQALGA-PGRLERVP-NTRELNIFIDYAHTPDALEKVSVALKSMGFKRLITV 367

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD  KRP+MG      AD+A+VT DNPR+EDPE I  +I  G+ G    + + +
Sbjct: 368 FGCGGDRDASKRPLMGAAVARHADVAVVTSDNPRTEDPESILDQIEPGLAGARLVLREVD 427

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R +AI  A++ +   D L++AGKGHE   ++   EK+   D +++RE L
Sbjct: 428 RRKAIALAVQSMQPGDALLIAGKGHEDYQVIGT-EKRHFSDFEVVRECL 475


>gi|206577734|ref|YP_002240443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
 gi|206566792|gb|ACI08568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
          Length = 495

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 162/505 (32%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P              ER + E++ DSR   +  +F+A+ G++ DG  +IP
Sbjct: 5   NLRDLLAPWVP-----------NAPERILREMTLDSRVAASCDLFIAVQGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AI+  +    +D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  +  G +S  +G               TT S + +   LS L 
Sbjct: 114 VTGTNGKTTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  ++  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 GQGATFGAMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  + +  +A        ++    G+++    V    +   +   
Sbjct: 232 HHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFD 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G   A +L+   +L  V GR E   +   
Sbjct: 292 SSWGNGEIESRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-SAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   SG++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPAVVVDYAHTPDALEKALQAARLHCSGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG +
Sbjct: 471 YQIVGNRRLDY-SDRVTVARLLGAV 494


>gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM
           17629]
          Length = 490

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 137/503 (27%), Positives = 223/503 (44%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +   +++           + +I+ +  DSR ++   +FV I G   D H FI
Sbjct: 1   MKLEKLLERMDYKVLAGS-------TDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  + +GA A+VV           T       + VD+TR  L+  ++  +    E I  +
Sbjct: 54  PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDDTRLALACMSAAYFDYPAEKIKTI 106

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +           G+ +  IG   S        +  TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G+  V +E SS  L  HR+ G     G FTNL  DHI  H   +    A     + L
Sbjct: 167 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEH---EHKDFADYMHCKSL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L ++    I+  D    E + + H               +  + V        + I    
Sbjct: 224 LFRQCRLGIFNGDDEHLEGVMKGHTCQVETYGYKSTNNLV-AENVELKKEHGALGIKYHV 282

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               DFD    +PG+F VYN+L A  +C    +D   + E L  + V  GR E V    R
Sbjct: 283 SGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSV-KGRIEIVPVTKR 341

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +R  MG+++  LAD+ +
Sbjct: 342 -YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLADLTV 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E     D++V+AGKGHE
Sbjct: 401 VTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    + ++I +I+
Sbjct: 461 DYQEIK-GVKHHMDERELIADII 482


>gi|295098589|emb|CBK87679.1| UDP-N-acetylmuramyl-tripeptide synthetases [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 471

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 159/474 (33%), Positives = 241/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR   +G +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  Q  G +   +G  
Sbjct: 61  IYLSQLNERLSALAGRFYNEPSDQLKLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + + + L+ L+ QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVSPTENTTGSAVDVQRVLAGLAEQGATFAAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  +++  +A    + 
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--THHHGQAIINADDEVGRRWLEKLPDAVAVSME 238

Query: 269 ---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +   +G+++   +V    +   +  +    + +    L G F V N L+A    +A+
Sbjct: 239 DRINPNCRGRWLKAVEVNYHDSGATIRFASTWGEGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+  E+L  V GR E   +      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPMADLLKTSERLQPVCGRMEVF-SAPGKPTVVVDYAHTPDALEKALEAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRVIINDILAGMLDAGRARVV 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI    + DV+++AGKGHE   IV N       D      +LG++
Sbjct: 418 EGRAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGNRRLDY-SDRVTAARLLGVV 470


>gi|324008320|gb|EGB77539.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 57-2]
          Length = 471

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 165/474 (34%), Positives = 241/474 (50%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+         AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYS--AHHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++    V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGYAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG+I
Sbjct: 418 EGRAEAVTCAVIQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 470


>gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
 gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
          Length = 533

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 145/527 (27%), Positives = 230/527 (43%), Gaps = 42/527 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ +I     E   Q      Q    +++ +  DSR I+ G +FVA  G+  DG  +I Q
Sbjct: 11  LKKIIKPLVNE---QFWKDNPQAAMTEVSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQ 67

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPI-----------------------LVVDNTR 99
           A+  GA  ++     S       +  N  +                       + V N  
Sbjct: 68  AVDGGATVVLFEQNDSETILETLLNDNQQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLS 127

Query: 100 KFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-F 156
             +S  A+R YG     +  + VTGT+GK+S A  + Q  +     +  +      +   
Sbjct: 128 SQVSHIAARFYGNPTNKMSVVGVTGTNGKTSCAYLMAQALEFLQYPTLMLSTIGNGNPSK 187

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
            Q    TTP  I + +  +   ++   H+++E SSHGL Q R+  ++     FTNL +DH
Sbjct: 188 LQATENTTPDAIAIQRLAAEYLARKNYHMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDH 247

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK- 275
           +DYH   ++YF AK +LF     +   A+I ADD Y + ++     A  ++     Q   
Sbjct: 248 LDYHSDMESYFQAKRQLFIR--EELEAAVINADDEYGRRLLTDDAVACRKIAFSCEQKNE 305

Query: 276 ------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                 +I  K +       Q  +            L G F + N L  A     +  D 
Sbjct: 306 DLNIENWIVAKNLTFNMRGIQAELHTPWGASKLRSGLLGHFNLSNLLAVAASLGEMFGDI 365

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              +  L     VPGR +   T S    + VDYAHT ++L+  L ++R   +G +  +FG
Sbjct: 366 DKWIVALNAAKAVPGRMQ-NFTASSKATVVVDYAHTPDALDKTLTSLREHCAGELWCIFG 424

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIE 447
           CGGDRD  KRP+MG +A   A+  I+TDDNPR+E  E+I + I  G+          R E
Sbjct: 425 CGGDRDNTKRPLMGAVAEQKANRVIITDDNPRTESSEEIVSMIRSGMKDQSTQYIQKRKE 484

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AI  A++     D+++VAGKGHE    + N +     D + +  ++ 
Sbjct: 485 AIEFALKHSTPNDIILVAGKGHEDYQQIGNKKVHY-SDLETVASLME 530


>gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
 gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
          Length = 500

 Score =  304 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 186/510 (36%), Positives = 271/510 (53%), Gaps = 30/510 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI +          +      +  +   + D R +  G +F A  G   +   FI
Sbjct: 1   MKLAALIERA--------GLPEADAGDATVTGFAIDHRKVAPGTVFGAFRGANFNAEDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P AI  GA AIV  S   ++            +  +  R+  +  A+  +   PE I+AV
Sbjct: 53  PAAIEAGAVAIVARSEAKVE--------GALHIASEEPRRDFAQLAAGFFTPAPETIVAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S A   +QI +  G  +  IG     +        LTTP  +     +S L+ 
Sbjct: 105 TGTNGKTSTAEMTRQIWRMCGERAASIGTLGVTTPDGSVSTGLTTPDIVTFLSNMSGLAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV+ EASSHGL Q+R +G+++ AG+FTN  RDH+DYH+T  AYF AKMRLF+E++ 
Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGLRVKAGAFTNFSRDHLDYHETMDAYFEAKMRLFDEVVE 224

Query: 240 KESPAIIY---ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           ++  AII+    +  +++  ++ A +    VL+VG +G F+ L    A    Q + +  +
Sbjct: 225 EDGKAIIWDGGEECEWTRRAIEHALSRKLHVLTVGERGDFLRLAAREATQLGQVLDVEYD 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+      PL G +Q  NALV+AGL IA G   A V + + +L  V GR E     + G 
Sbjct: 285 GESRKVKLPLIGAYQAANALVSAGLAIATGAAPAQVFDAIGRLQPVRGRLERACLTASGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +Y+DYAHT ++LE  +  +R    G    ++IVVFG GGDRD GKR  MGK+A D AD+
Sbjct: 345 PVYIDYAHTPDALEAAIAALRPHVDGEKGGKLIVVFGAGGDRDTGKRAPMGKVAADSADL 404

Query: 413 AIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I+TDDNPR EDP +IRA ++    G       G R EAI  AI  +   D+++VAGKGH
Sbjct: 405 VIITDDNPRGEDPGEIRAAVLEGAGGADHVRAIGGRREAIAAAIGQVGAHDIILVAGKGH 464

Query: 470 ETVHIVTNGE---KKMSVDCDIIREILGLI 496
           E   I+ +GE        D ++ RE   L+
Sbjct: 465 EQGQIIGSGETMRVMPFDDVEVARECAALV 494


>gi|326621819|gb|EGE28164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 471

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 236/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  EN+  +AVTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--- 266
           TNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++  + V        +  +    D +    L G F V N L+A    +A+
Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLTDLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI      DV+++AGKGHE   IV         D      +LG+I
Sbjct: 418 EGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLDY-SDRVTAARLLGVI 470


>gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
 gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
          Length = 502

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 149/519 (28%), Positives = 232/519 (44%), Gaps = 44/519 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L +LI      L  +L +      +   I +++ DSR +  G +FVA+ G + DGH F
Sbjct: 1   MTLDELIGP----LHGRLGVLERNGDQRVTIADLTDDSRKVGPGSLFVAVQGERVDGHQF 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSN-----TPILVVDNTRKFLSLFASRLYGKHP 114
           +                 +    +  ++ +      P + V ++R  L +  SR YG   
Sbjct: 57  L-------------DRVVAAGAAAVVVQRSGDVGAIPCVRVQDSRAALGILGSRFYGDPS 103

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLA 171
               ++ VTGT+GK++    V+ + + +      IG  +  +   +     TTP  + L 
Sbjct: 104 SSLRMVGVTGTNGKTTTTYVVKTMLEAARRQVGLIGTVAYLVGKESIPASHTTPGALELQ 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           K  + +    +  V +E SSH L   R  G +     FTNL +DH+D+H   + YF AK+
Sbjct: 164 KLFARMREARLDTVVMEVSSHALALDRTAGSEFDVAVFTNLTQDHLDFHLDMERYFQAKL 223

Query: 232 RLFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           +LF E      +     AII ADD +   +                     +   V    
Sbjct: 224 KLFAELGRAGAVKPRKRAIINADDPWGARIRSACTVPVWTYGLHQQADI--YADGVRLSP 281

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                T+            L GE  V N L A G+ +  G+    V   +E +  VPGRF
Sbjct: 282 AGTSFTLRSPAGTCPIKSRLVGEHNVSNLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRF 341

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V    +   + VDYAHT ++L  +L   + + +GRII VFGCGGDRD+ KRP MG+ A
Sbjct: 342 ELV-EAGQDFSVVVDYAHTEDALVRLLTAAQALRTGRIITVFGCGGDRDRTKRPKMGRAA 400

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---------GFIEKGNRIEAIRTAIEMLN 457
           +  +D+ I+T DNPR+EDP  I  E+  G+           +    +R EAI  AI    
Sbjct: 401 VKYSDVVILTSDNPRTEDPAAILREVEVGVKEALAERGHVRYRMVADRREAIEAAIREAK 460

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             D++++AGKGHE   IV    K    D ++ R+ +G +
Sbjct: 461 PGDMVLIAGKGHEDYQIVGT-TKHHFDDREVARDTIGAL 498


>gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
 gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
          Length = 523

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 143/493 (29%), Positives = 237/493 (48%), Gaps = 21/493 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+            +     ++R+IN +S DSR +  G +F A  G ++ GH +I  
Sbjct: 26  LSDLLAGL---------VSVGTAQDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGA 76

Query: 63  AIAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           A+ +GA A+       L     +     + P++ + +    L + A R Y +  +   ++
Sbjct: 77  AVGKGAVAVAYDPIIPLSSVVHAGLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVM 136

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV+ F+ Q   +       IG          + ++LTTP  + + + L+  
Sbjct: 137 GVTGTNGKTSVSHFLAQALHQQEAPCGLIGTLGVGLMGALKPSQLTTPDAVTVQEQLAVT 196

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G  +  +E +SH L+Q R++G+      FTNL R+H+DYH     Y  AK RLF + 
Sbjct: 197 RAAGGRYAVMEVTSHALEQGRVNGVIFNTAIFTNLSREHLDYHGDMTRYGAAKFRLFGQP 256

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             + +   +    A    +             +      + + ++        + I    
Sbjct: 257 GLRHAVINVDDT-AGEAFLAHLPAEVTVISYGLTNPQASLRVNELHCDRRGIVMNIQGPW 315

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + + + PL G F  YN L A G  +  G+     L+ L ++  V GR E +G  +    
Sbjct: 316 GEGELICPLLGRFNAYNLLAALGGLLTTGMPFTEALQRLSQVQAVAGRMEPMGGAAGEPL 375

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VDYAHT ++LE  L ++R       R+  VFGCGG+RD+GKRP+MG +A   AD  ++
Sbjct: 376 LVVDYAHTPDALEQALCSLRAHLEPGARLWCVFGCGGNRDRGKRPLMGAVAERWADFVML 435

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPR EDP +I  EI+ G+       +  +R EAI  A+E+   +D++++AGKGHE  
Sbjct: 436 TDDNPRDEDPRQIIIEILSGMEAPDRVYQLRDRAEAISRAVELAGSKDIVLIAGKGHEEY 495

Query: 473 HIVTNGEKKMSVD 485
             V   E++   D
Sbjct: 496 QQVGT-EQRPFSD 507


>gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 501

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 169/510 (33%), Positives = 254/510 (49%), Gaps = 31/510 (6%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L+DLI   +  E+  +L        +  +  +  DSR +    +FVAI G   DGH +
Sbjct: 1   MRLKDLINSIELVEIAGELH------EDTPVGSICFDSRKVGPNAVFVAIRGFNTDGHQY 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I QA+   A AIV        +   +  S+   L V ++R+ L+  A R Y    +   +
Sbjct: 55  INQAVEADAMAIVCE------EIPKSWSSHQLFLKVWDSREALAKIAKRFYENASDELKV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    ++ I   + + +  IG T  I  +   +   TTP  + L +    
Sbjct: 109 IGVTGTNGKTTTTGMIKCILDANEIKTGLIGTTGYIIGNQLYELDRTTPDALELHQLFHK 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G   V +E SSH L   R  GI+     FTNL  DH+D+H +  AY +AK  LF+ 
Sbjct: 169 MLEAGCRAVVMEVSSHALALKRTAGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFDN 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-- 294
            L + + A+I ADD Y+++++K       R   +  + K +    +  +      TI+  
Sbjct: 229 -LSESAFAVINADDDYAEKMVKDCKANIVRCGVINAREKELENPIIDVMAKVFSYTINGT 287

Query: 295 -----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +       F   G+F +YN + A    +A G D   ++  L K   V GR + V
Sbjct: 288 SAIIADDKNSMMHQFRTLGKFNMYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQV 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +       VDY+HT ++LE  L+ I      +GRII +FGCGGDRD+ KRP+MGKIA 
Sbjct: 348 -WSKDHRCAIVDYSHTPDALENALQTICLVKPENGRIITLFGCGGDRDKEKRPLMGKIAE 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D +DI I+T DNPRSEDPEKI  +I  GI     F    +R  AIR AI +L + DV ++
Sbjct: 407 DNSDIIIITSDNPRSEDPEKILDDIQAGIHKQNNFYRIVDRETAIRKAITLLTRGDVALI 466

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AGKGHET   +  G+K    D +II  +  
Sbjct: 467 AGKGHETYQEIA-GKKFHFDDKEIIESVFR 495


>gi|75907370|ref|YP_321666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
 gi|123610271|sp|Q3ME15|MURE_ANAVT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|75701095|gb|ABA20771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
          Length = 496

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 171/500 (34%), Positives = 253/500 (50%), Gaps = 17/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       ++ +   P    + ++  + ++S    AG +F+ + G + DG  F 
Sbjct: 1   MKLRELLA-----TVDSVENLPPVLADTEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA GA A +VS     ++  +       ++  +N  K  +  A+  YG   + +  +
Sbjct: 56  PSAIASGAIAAIVSPQAVEKNPPS---DEAVVISSNNMTKACAAIAAAFYGYPGQKLKLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++ LS+  +G        F Q    TTP  + L + L+  
Sbjct: 113 GVTGTNGKTTTTHLIEFFLTKAQLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G     +E SSH L Q R+ G     G F+NL +DH+DYH   + YF AK  LF   
Sbjct: 173 VNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPD 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII ADD Y + ++K          SV      + +  +    N    TI    
Sbjct: 233 -YLKGRAIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPE 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
            D  F  PL G++ + N L + G  + +G+D  L+   + +   VPGR E V  N  +  
Sbjct: 292 GDVSFRSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFPGVPGRMERVQINPDQDI 351

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKIA +LAD+A VT
Sbjct: 352 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIAAELADLAFVT 411

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDPEKI  +I+ GIP  +     G+R  AIRTAI      D +++AGKGHE   
Sbjct: 412 SDNPRTEDPEKILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 471

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 472 ILGT-EKIHFDDREHARAAL 490


>gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 512

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 147/509 (28%), Positives = 227/509 (44%), Gaps = 28/509 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+ +   E +    I   Q  + ++N V  DSR +  G IF  + G + DGH F 
Sbjct: 1   MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+ +GA A+ V+   +            P LV  + R F+   A+ LYG       ++
Sbjct: 61  RDAVDRGAVALCVARPLA--------EVQVPQLVSRDPRAFMGRLAATLYGWPARDLKMI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            +TGT+GK++    +  I +  G  +  +G          ++   TTP    +   L  +
Sbjct: 113 GITGTNGKTTSTYMMGSILEAQGTRTGLLGTVFYCDGVTFEHADRTTPEGADVQWFLKRM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +EASSHGL Q R++G +   G FTNL  +H+D+H T+ AYF+AK  LF   
Sbjct: 173 RDNSCQACVMEASSHGLKQGRIEGCEFDGGLFTNLTPEHLDFHLTEDAYFDAKRLLFNRY 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTI 293
           + +       A D     ++    +       +G            +          + +
Sbjct: 233 MKEGWVGASNASDPRGAALLMEHPDRMHGYRVIGSNESPVEGCWCGRIRSYDLEGMTLEV 292

Query: 294 SVEGKDFDFLF---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   F     PL G +   NA+    L + +GI    V+  L  +  VPGR E   
Sbjct: 293 YDPRGRLAFREVSLPLIGTYNGENAMGVIALSMGMGIGGDAVVRGLASMPQVPGRLETYR 352

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +R     +DYAHT + LE +L  +R +T G++ VVFG GG+R    RP +G +A  LA
Sbjct: 353 FPNR-VVGVIDYAHTPDGLEKVLGALRGVTVGKLWVVFGHGGERTGSHRPKLGAVAASLA 411

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--------EKGNRIEAIRTAIEMLNKQDVL 462
           D A+VT DNPRSEDP  I A+I+ GI               +R EAIR A++     DV+
Sbjct: 412 DRAVVTMDNPRSEDPASIAAQIVSGISHARAREGFQHWVILDRGEAIRYALDNAEIGDVV 471

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + GKG E   + ++  +    D   +R 
Sbjct: 472 AITGKGPERFILFSD-RRVPFEDSAELRR 499


>gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 489

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 149/506 (29%), Positives = 245/506 (48%), Gaps = 32/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ LI       I          +E +I  + + S+ +  G +F+A  G   DG  +I
Sbjct: 1   MKLKRLIKDLPNAEIKGS-------KEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +A+  GA A++        +           ++  N         S  Y +  E   ++
Sbjct: 54  AEAVETGAAAVL--------NDIFDPSLKVSQIIHPNVAVVEGKLVSAFYHRPGEELLMV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V+  ++ +     +    IG     I   A     TTP      K L  +
Sbjct: 106 GVTGTNGKTTVSYLIKHLFDSLEMRPGLIGTIEYLIGDHAAPATHTTPDVATNHKLLREM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF--- 234
            +Q      +E +SH L Q R+  I    G FTNL +DH+DYH+T  AY   K +LF   
Sbjct: 166 VNQRSQAAVMEVTSHALHQGRVSEISFDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSL 225

Query: 235 ----EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
               ++       A++  DD + ++++              +       +++        
Sbjct: 226 DPEAKKRKNYPKAAVVNIDDPWFEKIIDGCRVPIITYGIANHADL--RAEEIQLGAEGIV 283

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+  +GK +    PL G F V N+L   G  I++G+    VL+ ++    VPGR E+V 
Sbjct: 284 YTLVHQGKRYPVSLPLIGRFNVLNSLATIGCGISLGVPLNKVLDAVKSFPPVPGRLEYVP 343

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N RG +++VD+AHT ++L+ +L  ++ +T G++IVVFGCGGDRD  KR  MG+IA + +
Sbjct: 344 -NKRGLKLFVDFAHTPDALKNVLNCLKELTQGKLIVVFGCGGDRDPYKRSQMGRIAEEFS 402

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D+AI+T DNPRSE+P  I  +I+ G      FI+  +R +AI  AI     +DV+++AG+
Sbjct: 403 DLAIITSDNPRSENPANIMDQIVAGFNDPSCFIKIEDRRKAIEEAIHRATPEDVVLIAGR 462

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHE   I  +   +   D +++ +IL
Sbjct: 463 GHEPYQIFAHQTIE-FKDREVVEDIL 487


>gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
 gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
          Length = 494

 Score =  304 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 157/495 (31%), Positives = 237/495 (47%), Gaps = 10/495 (2%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L       L    +I   +     +  +  DSR +  G  FVA+ G+  DG  FI  A
Sbjct: 3   KELTLAAL--LSPWQNISADKSANIAVQHLELDSRKVTNGTTFVAVKGHAVDGRRFIASA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A++  S       +       P++ +      LS  ASRLY  H   I+ VTGT
Sbjct: 61  IELGANAVIAESCEQHLAGTIEYIDTIPVIYIAQLGTHLSALASRLYPLHEHQIIGVTGT 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+++   + Q  +  G  +  +G T        Q    TT + I + + L  L  Q  
Sbjct: 121 NGKTTITQLIAQWLELIGKKAAVMGTTGNGFLDDLQPAANTTGNAIEIQQTLHQLEQQSA 180

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              ++E SSHGL Q R+  +    G F+NL RDH+DYH T + Y  AK  LF E      
Sbjct: 181 QFTALEVSSHGLVQGRVKALDFAVGVFSNLSRDHLDYHGTMEEYAEAKFSLFSE--HNCH 238

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD      ++R  NA    L      + +  K V    +   ++I       D 
Sbjct: 239 NAVINIDDQVGSRWVERLDNAIAVSLKPTAIERAVWAKSVAYSESGISLSIDGMFGAGDC 298

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           + PL GEF   N L+A    +A+GID  L+LE    L  V GR E         ++ VDY
Sbjct: 299 VVPLIGEFNASNVLLAMTTLLALGIDKQLLLETASSLKPVLGRMELFTAE-NKAKVVVDY 357

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L  +R    G++  +FGCGGDRD GKRP+M  I   LAD  I+TDDNPRS
Sbjct: 358 AHTPDALEKALNALRVHCQGQLWAIFGCGGDRDTGKRPMMAAIGERLADRVILTDDNPRS 417

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E P +I  +++ G+      + + +R +A++ A+   +  D++++AGKGHE   ++ +  
Sbjct: 418 ESPAEIVKDMLVGMNQPDTAVVEHSRFDALQFALANSHADDIILLAGKGHEDYQVMAHET 477

Query: 480 KKMSVDCDIIREILG 494
                D +   ++L 
Sbjct: 478 IHY-SDRESAIQLLE 491


>gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
 gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
          Length = 495

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 138/503 (27%), Positives = 223/503 (44%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +   +++           + +I+ +  DSR ++   +FV I G   D H FI
Sbjct: 6   MKLEKLLERMDYKVLAGS-------TDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  + +GA A+VV           T       + VDNTR  L+  ++  +    E I  +
Sbjct: 59  PDVVKKGAAAVVVEKDV-------TPIEGVTYIKVDNTRLALACMSAAYFDYPAEKIKTI 111

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +           G+ +  IG   S        +  TTP    + +    +
Sbjct: 112 GITGTKGKTTTTYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G+  V +E SS  L  HR+ G     G FTNL  DHI  H   +    A     + L
Sbjct: 172 VDEGLDAVVMEVSSQALMLHRVSGFTFDIGVFTNLEPDHIGEH---EHKDFADYMHCKSL 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L ++    I+  D    E + + H               I  + V        + +    
Sbjct: 229 LFRQCRLGIFNGDDEHLEGVMKGHTCQVETYGYKSTNNLI-AENVELKKEHGALGVKYHV 287

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               DFD    +PG+F VYN+L A  +C    +D   + E L  + V  GR E V    R
Sbjct: 288 SGLLDFDVEVNVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSV-KGRIEIVPVTKR 346

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAH + +LE +L  ++    GR++ +FGCGG+R + +R  MG+++  LAD+ +
Sbjct: 347 -YTLMIDYAHNAMALESLLTTLKEYEPGRLVCLFGCGGNRAKSRRYEMGEVSSRLADLTV 405

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNPR E+P  I  +I+ G+      ++   +R EAIR  +E     D++V+AGKGHE
Sbjct: 406 VTSDNPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKGHE 465

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    + ++I +I+
Sbjct: 466 DYQEIK-GVKHHMDERELIADII 487


>gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 487

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 146/502 (29%), Positives = 241/502 (48%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +LI     E+I        +  E  +  +++DSR ++ G +FVAI G   DGH + 
Sbjct: 1   MNLAELI-----EVIQTQKT--ERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA AQGA AIV             +    P+++V +T + ++  A + Y    E   ++
Sbjct: 54  KQAEAQGAVAIVSER---------LLDVTIPVILVRSTTRAMAELAGKFYDYPSEKMRMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++  + V+ +  + G  +  IG     I      +R TTP    L      +
Sbjct: 105 GITGTNGKTTTTTIVRDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
             +GV  V +E SSHGL+  R+ G       FTNL  DH+D+H+T + Y  AK       
Sbjct: 165 HQEGVEDVIMEVSSHGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQL 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + L  +  A++ ADD  S             +     Q   +  K +     +   T+ 
Sbjct: 225 GQRLSDKKVAVLNADDEISHLF--EMMTGARVLTYGIEQPADLQAKNITQTLQETTFTMV 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + +  +      G F VYN L+A G+ ++IG     +   + ++    GR + +  +  
Sbjct: 283 YQEQAVELTVQFIGRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQRLPID-- 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  IYVDYAHT + +E  LK +  +    II + G GG+RD  KRP+MG++A   A   +
Sbjct: 341 GYNIYVDYAHTPDGIEQCLKALVDVPKENIIFLIGTGGNRDVTKRPMMGQLASTYAGTVV 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +T D+PR E  E I + I  G+    F+E G+R EA+R A  +    +++++AGKGHE  
Sbjct: 401 ITTDDPRFESYESITSGIASGMLHDQFVEIGDREEAVRYAASLARPDNIVILAGKGHEKY 460

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+ + EK    +  +++E++ 
Sbjct: 461 QIIGD-EKTPLDEEALVKEMIR 481


>gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
 gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
          Length = 502

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 157/498 (31%), Positives = 235/498 (47%), Gaps = 13/498 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +    L   L    ++  ER I+ V+ DSR ++ G++F+A+ G    G  F  +A++Q
Sbjct: 5   LARAAHRLRGLLEPLGIEADERPIHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQ 64

Query: 67  GAEAIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           GA AI+        D + + R      P + V +    + + A+R YG    N+  + VT
Sbjct: 65  GAAAILWQPTPGFDDQALSARCAKQAVPCIAVHSLHAQVGIIAARFYGDPGANMTVIGVT 124

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           GT GK+SV+ F+     R       +G           +   LTTP PI L   L+ L +
Sbjct: 125 GTDGKTSVSQFIAHALGRKEYRCGILGTLGCGLPGHLRRVTSLTTPDPITLQCELNQLRA 184

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    V +E SSH LDQ RL G+       TNL RDH+DYH +Q AY  AK  LF+    
Sbjct: 185 RHAQAVVIEVSSHALDQQRLAGVGFDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQRPEL 244

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                 +  DD          H         G +   +   ++ A  +  ++ +   G  
Sbjct: 245 HTVVVNVD-DDFGRSLRASVRHARVIGYSLAGIETAQLRCLRLAAQSDGLRLLLDAGGCR 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   N L A G  +A+ +     L+ L  L  V GR E  G+  R   + 
Sbjct: 304 AAVRVGLLGRFNAANVLAALGALLALDVPLREALQRLSLLQPVSGRMERYGSEGRPT-VV 362

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAHT   L+  L  +R   +GRI  VFGCGGDRD+GKRP+MG +A   AD  I+T+DN
Sbjct: 363 IDYAHTPAGLQAALAAMREHFAGRIWCVFGCGGDRDRGKRPLMGALARASADRIIITNDN 422

Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR+E+P +I AEI  G           +R EA+  +I     +D ++VAGKGHE   ++ 
Sbjct: 423 PRTENPRRIIAEIQAGAGADSRVRVIEDRREAVIHSIRAAAPEDAILVAGKGHEEYQLIG 482

Query: 477 NGEKKMSVDCDIIREILG 494
              +    D + +++ LG
Sbjct: 483 T-RQLPYSDRETVKQALG 499


>gi|332768875|gb|EGJ99054.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shigella flexneri
           2930-71]
          Length = 471

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 166/474 (35%), Positives = 242/474 (51%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG I
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLGGI 470


>gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
 gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
          Length = 507

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 158/509 (31%), Positives = 249/509 (48%), Gaps = 18/509 (3%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK  ++LI          +     +  + +I  ++ +S+ ++  +IFVAI G K+DGH +
Sbjct: 1   MKYFKNLIKGYDN---LNIKEITKESLKLEIKSIAYNSKLVKKNYIFVAIKGLKDDGHKY 57

Query: 60  IPQAIAQGAEAIV--VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I  AI   A  I+  +S+  S  +       N   +   N R+ L+  +++LY +  + +
Sbjct: 58  IESAIKNKASIIIYDISADKSFINSLKEKYKNVCFVGSKNPRETLAYMSAKLYDEPTKKM 117

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174
             +A+TGT+GK++ +  ++   + +      IG   + I        LTTP  + L    
Sbjct: 118 HSIAITGTNGKTTTSYLLKAALESAKNKIALIGTIKNMIGKSEIKTNLTTPESVDLENIF 177

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---M 231
                + V+H+ +EASS  L   R D I   A  FTNL  DH+DYH   + Y  AK    
Sbjct: 178 DKAYKKNVSHIVMEASSQALAMDRCDYINYDAAIFTNLTEDHLDYHIDMKNYLKAKLKLF 237

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L ++   K+  AII     Y KE+         ++++ G   K  +  K+  +++K   
Sbjct: 238 SLLKQSSKKKKLAIINISTDYFKEIKNYIKKLDLKMVTYGLNEKADYYAKIITLNSKYSE 297

Query: 292 TISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   F     L   GEF V N+L          +D   V++ + K+ V  GRFE V
Sbjct: 298 YEFYAKGKFISKVKLSLLGEFNVVNSLSVLAYAYEYKLDIEKVIKAIRKVQVS-GRFEIV 356

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + VDY+HT +SLE IL   R +   R+IVVFGCGGDRD+ KRPIM  IA   
Sbjct: 357 SGEKCPFIVAVDYSHTPDSLENILVESRKLKPNRVIVVFGCGGDRDRKKRPIMASIAEKY 416

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           ADI+I+T DN R+E  E+I ++I +G     + +  +R EAI  AI+   + D++++AGK
Sbjct: 417 ADISILTTDNQRTESIEQIMSDIENGFTHSNYKKIIDRKEAIFEAIKEAKENDIVIIAGK 476

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GHET  I  + +     D ++ RE L  I
Sbjct: 477 GHETYQIFPD-KTIHFDDTEVAREALSNI 504


>gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase
           [Alistipes shahii WAL 8301]
          Length = 484

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 148/504 (29%), Positives = 235/504 (46%), Gaps = 32/504 (6%)

Query: 2   KLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           KL D++      E+    +          I  +  DSR ++ G  F A+ G + DGH +I
Sbjct: 3   KLTDILKNTPVREVCGDTAAA--------IGGLVYDSRAVKPGDCFFAVPGTQSDGHDYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P A+ +GA AIV           A        ++V ++   ++  A+  Y        ++
Sbjct: 55  PIAVEKGAAAIVCER------MPADAAEGVAYVLVGDSAGAMADMAAAFYDYPSRELKLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A+ +  + +  G  +  I      I     +   TTP  I L   +  +
Sbjct: 109 GITGTNGKTTTATLLYDLVRAMGYKAGLISTVVYKIDGREVEATHTTPDSIRLNAMMREM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH + Q R  G+    G F+N+  DH+DYH+T   Y  AK  LF + 
Sbjct: 169 ADAGCAYCFMECSSHAIVQERTRGLDFAGGIFSNITHDHLDYHKTFAEYIRAKK-LFFDG 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + A+  ADD   + +++    A               + ++       ++      
Sbjct: 228 LPKGAFALTNADDRNGRVMVQNTAAAVSAYSLRAMADFRCKIVEMHLDGMLLRIDGQELW 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F        YN L   G    +G++   VL  L  LH V GRFE +   + G  
Sbjct: 288 VGLLGRFNA------YNLLAVYGAAALLGLNRGEVLRVLSMLHAVSGRFEKIRAAN-GTT 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++LE +++ I  I +   ++IVV GCGGDRD+ KRP M  IA+  A  A+ 
Sbjct: 341 AIVDYAHTPDALENVIQTIEEIRTPGQQLIVVCGCGGDRDRTKRPEMAAIAVKYATTAVF 400

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR E PE I  +++ G+     ++   +R EAIRTA+ +    D+++VAGKGHET 
Sbjct: 401 TSDNPRHESPEAILDDMVAGLEPGARYLRIADRAEAIRTAVMLSRPGDIILVAGKGHETY 460

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            IV +  K    D + I++   L+
Sbjct: 461 QIVGD-VKHPFDDREEIKKRFALL 483


>gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
          Length = 495

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 157/503 (31%), Positives = 242/503 (48%), Gaps = 31/503 (6%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              E+ N +    ++     +I  +++DSR +Q G +F  + G K DGH F   A + GA
Sbjct: 2   TLNEIANWILAAKLEGDGNVQITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            A+VV     +           P L+V ++R  +++ + R Y    + +  + VTGT+GK
Sbjct: 62  AALVVERKLDVA---------IPQLIVKDSRLAMAIISDRYYDHPSQKLRLIGVTGTNGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    +++I   +G S+  IG      +        TTP  + L + L+ ++  GV   
Sbjct: 113 TTTTYLIERILSDAGQSAGVIGTIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSC 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-------RLFEELL 238
           ++E SSH LDQ R  G +   G FTNL +DH+DYH T + Y  AK          + E  
Sbjct: 173 AMEVSSHALDQGRTWGCRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAE 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            + S A++ ADD+ S      A            +   +    +          +     
Sbjct: 233 AERSYAVLNADDSASDLFANAAAVEILTYGI--DREADVRASDIRITSRGTTFRLETFRG 290

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    + G+F VYNAL A  + +  GI    + + LE L  VPGR E V        +
Sbjct: 291 GADISIRMVGKFNVYNALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDAGQ-PYAV 349

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE +L+ ++    GRII VFGCGGDRD+ KRPIMG+IA   ADI ++T D
Sbjct: 350 IVDYAHTPDGLENVLRTVKEFVEGRIICVFGCGGDRDRTKRPIMGRIAAKYADICVITSD 409

Query: 419 NPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPRSE+P  I  ++  G+         ++   +R  AI  A+EM +  DV+++AGKGHET
Sbjct: 410 NPRSENPHAILLDVEEGLKADGIPSNRYLLIEDRRHAIEKAVEMASPGDVVLIAGKGHET 469

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+   +     D  +  E + 
Sbjct: 470 YQIIGP-KTFDFDDRLVAEEAIR 491


>gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 488

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 155/477 (32%), Positives = 239/477 (50%), Gaps = 13/477 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  ++ DSR  +AG +F+AI G++ DG  +IPQA+  GA A++  +  + Q      
Sbjct: 15  DVNLIHMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADSAQQHLQIHY 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144
             N P++      + LS  A   Y    + +  + VTGT+GK++    + Q  Q  G +S
Sbjct: 75  EQNVPLIAFYQLSENLSRLADVFYQSPSKRLTLVGVTGTNGKTTTTQLLAQWTQLLGHTS 134

Query: 145 FQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G          ++   TT S + +  +L+   +QG    ++E SSHGL QHR++G+ 
Sbjct: 135 AVMGTIGNGLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVSSHGLVQHRVEGVH 194

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A  FTNL RDH+DYH + + Y  AK RLF EL  +       ADD      ++   NA
Sbjct: 195 FSAAVFTNLSRDHLDYHHSMENYAAAKKRLFTELDSRNQII--DADDPIGAAWLRELPNA 252

Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +  +   Q +++    V   H    +  +    D +    L G F V N L+   
Sbjct: 253 VAVSTNPDFSPQQTQWLKAVDVHFHHKGAVIKFASSWGDGELHSALIGAFNVSNLLLVTA 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G   + ++  + KL  V GR E + T +    + VDYAHT ++LE  L+  R   
Sbjct: 313 TLLTLGYSLSELVNSVNKLTGVCGRMEML-TATHKPTVIVDYAHTPDALEKALQAARLHC 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
            G++  +FGCGGDRD+GKRP+M  IA  L+D  I TDDNPR+ED  +I A+I+ G     
Sbjct: 372 HGKLWCIFGCGGDRDRGKRPLMAGIAEKLSDHVIATDDNPRTEDHTQIMADILKGFINPQ 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                  R EAI TAI+   + DV+++AGKGHE   I+    K    D ++ R  L 
Sbjct: 432 AVQVIHQREEAIATAIKSAVENDVILIAGKGHEDYQIIG-KTKHHFSDQEVARHYLS 487


>gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
          Length = 485

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 222/501 (44%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+                     ++ +V  DSR +Q G +F+ I G   DGH F+
Sbjct: 1   MKLTALLEDLEYTCC-------QGDENAEVTDVVYDSRKVQKGSLFLCIRGAVVDGHTFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           P  + +GA  +VV       +       +  +++V +TR  ++  ++  +G        +
Sbjct: 54  PDVVKKGAGVLVVEEKVEAPE-------HVTVILVKDTRYAMACISAAYFGHPARRLKTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK++    V+ I + +G     IG    I          TTP    + K    +
Sbjct: 107 GVTGTKGKTTTTYMVKSILENAGYRVGLIGTIEAIVGDKVIPAVNTTPESYVIQKYFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G   V +E SS  L  HR  G +   G FTN+  DHI     +   F   +     L
Sbjct: 167 ADAGCDCVVMEVSSQALMLHRTAGFEFDFGIFTNIEPDHIG--PNEHRDFQHYLECKSML 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
           L +    I+  DD + ++++K    A                 K+ +      +   V  
Sbjct: 225 LRQCKVGIVNRDDKHFEQIIKGHTCALETFGFSEKADLRAEDAKLVSGKGWLGIDYQVRG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +F     +PG+F +YN+L A  +C    +     + +  ++  V GR E +  +    
Sbjct: 285 MMNFQVEIDIPGKFSIYNSLTAIAICRHFKVS-EKDIVNALRVAKVKGRIEMIKVSDE-F 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + +LE +L  +R     R++ +FGCGG+R + +R  MG+ +  LAD+ I+T
Sbjct: 343 TLMIDYAHNAMALESLLTTLREYHPHRLVCLFGCGGNRSKLRRYEMGETSGRLADLTIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR E P+ I  +I  GI      +IE  +R EAI  AI      D++++AGKGHE  
Sbjct: 403 SDNPRYEKPQAIIDDIKVGISKTDGKYIEIADRKEAIAYAIHHGEPGDIIILAGKGHEDY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  G+K    +  +I +IL
Sbjct: 463 QEIE-GKKYPMDERVLIADIL 482


>gi|224581966|ref|YP_002635764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224466493|gb|ACN44323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 471

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 236/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  EN+  +AVTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--- 266
           TNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++  + V        +  +    D +    L G F V N L+A    +A+
Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLTNLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+  AI      DV+++AGKGHE   IV         D      +LG+I
Sbjct: 418 EGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQRLDY-SDRVTAARLLGVI 470


>gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 485

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 149/480 (31%), Positives = 235/480 (48%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  +      +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKK 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   +++D+ R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKH-------NVSYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG     I     +   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPITRIGTIEYKIGDKVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R++ +      FTNL +DH+DYH T + YF AK +LF +L    +  I   DD Y K 
Sbjct: 181 IGRVEVLDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVI-NVDDEYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G +   +         +   + +  + +     F L G+F +YN 
Sbjct: 240 LYDEFIVDNPEIISYGIENGDLEGD----YSDDGYIDVKYKNQIEKVKFSLLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +G RII +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I  ++  
Sbjct: 355 ARNIKNGSRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +  + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 487

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 243/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D++YK     +       +      +N++  DSR IQ   +FVAI G   DGH +I
Sbjct: 2   MILKDILYKVTINAV-------VGSTSVSVNKIEFDSRQIQVNDVFVAISGTVTDGHRYI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            + I  GA  IV             ++ +   + V N+ K L+  A+  Y    E   ++
Sbjct: 55  DRVIDAGATTIVCE------VLPEALKDDVTYIEVANSNKALAYMAANFYEHPSENLKLI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V+S + Q+ +++G     +     +  +       TTP  + + + L  +
Sbjct: 109 GVTGTNGKTTVSSLLYQLFKKAGYKVGLLSTVKIMVDTTTYKATHTTPDSLTINRYLKQM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +GV    +E SSHG+ Q R +G++   G FTNL  DH+DYH T   Y + K  LF + 
Sbjct: 169 NDEGVEFCFMEVSSHGIHQSRTEGLRFTGGIFTNLSHDHLDYHDTFAEYRDVKK-LFFDQ 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK++ A+   DD     +++             Y      + +           + ++ 
Sbjct: 228 LPKDAFALSNMDDKNGLAMLQNTQAKKYTYALKNYADYRAQILENEFSG------LLLKV 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +    L G F  YN L   G    +G++   +L  + +L  V GRF+    +     
Sbjct: 282 NDSELWTRLIGSFNAYNILAIYGTAELLGLEKDEILRLISELENVSGRFQ-YFISDEKIT 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L+ +L+ I  I +     I V GCGGDRD+ KRP M  IA  L+   I 
Sbjct: 341 AVVDYAHTPDALKNVLETINNIRTKNEELITVVGCGGDRDKTKRPKMAHIASTLSTKVIF 400

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPRSE PE I  ++  G+        +   +R +AI+TA +M + +D++++AGKGHE
Sbjct: 401 TSDNPRSEVPETIIEDMEKGVEPQNFKKTLSITDRKQAIKTACQMADTRDIILIAGKGHE 460

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  GE+    D   ++E+L
Sbjct: 461 TYQEIK-GERFDFDDYKTVQELL 482


>gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
 gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase; AltName: Full=D-lysine-adding enzyme; AltName:
           Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
          Length = 490

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 234/501 (46%), Gaps = 28/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +  ++       +  L +      + +I  VS+ S  ++ G +F+   G K D H  I
Sbjct: 1   MNISTIVSN-----LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEII 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ + +GA A+VV     L         + P + V ++R F +  AS  +    +++L  
Sbjct: 56  PEVMEKGAVAVVVEREIDL---------DFPYIQVFDSRYFEAKVASLFFEDPWKDVLTF 106

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
             T       + +      +  G     +      I   +  + +TTP  I +  A+   
Sbjct: 107 GVTGTNGKTTTTMMIYHMLTSLGERGSVLTTAVKRILGNSYYDDITTPDAITILSAMKEN 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G    ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ L
Sbjct: 167 REGGGKFFALEVSSHALVQQRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLL 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +  +       +    +    ++     +     L  +       Q  +    
Sbjct: 227 KDDGVAVLNES-------LADAFNRKSRKITFGTSKNADYRLGNIEVSWEGTQFVLETPD 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356
                     G+F  YNA  A      +G D   +   LE    V GRFE   G    G 
Sbjct: 280 GLLKVFTRAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGL 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VD+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T
Sbjct: 340 NVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            D+PR EDPE+I  ++I GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   
Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQ 459

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+   +K    D +++ EI+ 
Sbjct: 460 IIDEEKKVPFQDREVVEEIIR 480


>gi|332764931|gb|EGJ95159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-671]
          Length = 472

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 165/472 (34%), Positives = 241/472 (51%), Gaps = 14/472 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  +N+  + VTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  IYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL RDH+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A      
Sbjct: 181 TNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSME 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++   +V    +   +  S    D +    L G F V N L+A    +A+
Sbjct: 239 DHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             R EA+  A+    + DV++VAGKGHE   IV N       D   +  +LG
Sbjct: 418 EGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY-SDRVTVARLLG 468


>gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
 gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
          Length = 500

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 157/504 (31%), Positives = 244/504 (48%), Gaps = 26/504 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+     E ++  ++      E +I  ++SDSR      +FVA+ G   DGH FI  
Sbjct: 4   LKRLL-----ERLDVSAVVGGIQSEMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGD 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A++ G++A+V        +   T       ++V + R+ ++  A   YG   +   I+ V
Sbjct: 59  AVSLGSKAVVCE------ELPETPAERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++ A  +  +    G+ +  IG   +           TTP    L +  S ++ 
Sbjct: 113 TGTNGKTTTARLMAGMMNDCGIRTGYIGTGLALAGDEKILLERTTPEAEELHRLFSIMAE 172

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G   V +E SSH L   R  GI      +TNL +DH+D+H T ++Y +AK  LF   + 
Sbjct: 173 RGCRAVVMEVSSHALVLQRTFGIVFSGAVYTNLTQDHLDFHHTMESYASAKRLLFGA-VS 231

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK------VCAIHNKQQVTI 293
            E   ++ ADD  +  + +    +     +VG         K      + A     +V I
Sbjct: 232 PEGFVVVNADDPRAGFMAENRGKSRLYCCTVGDSHYACSEGKAFSATLLEAGLQAARVAI 291

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G+ +D LF L G F V N L      +A+G++   VL  L     V GR E V   +
Sbjct: 292 DADGRGYDVLFRLTGLFNVMNLLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAA 351

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 VDYAHT ++LE ++  +  +    G +IVVFGCGG+RD  KR +MG+IA   AD
Sbjct: 352 GDFFAVVDYAHTPDALEKVIGTLNELKPEEGELIVVFGCGGNRDHEKRSVMGRIASRGAD 411

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+T DNPR E+PE I  +I  GI  PG++   +R EAI   + +L + D+L+VAGKGH
Sbjct: 412 RLIITSDNPRDENPESILDDIAEGIVSPGYMRFCDRAEAIHCGVNLLKEGDILLVAGKGH 471

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET      G      D +   E++
Sbjct: 472 ETCQE-KAGASSFFSDRETTEEVI 494


>gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
 gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
          Length = 487

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 249/504 (49%), Gaps = 33/504 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+ L+D+++      ++  +          +N +  DSR +  G +FVAI G   DGH +
Sbjct: 1   MRALKDILFGVSITAVSGSTS-------VMVNSICFDSRIVTMGDVFVAIKGTITDGHEY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +AIA GA+ I+  +         TI  +   + VDN  K L++ AS  Y    +   +
Sbjct: 54  IEKAIALGAKTIICET------MPVTIVDDVTYVEVDNGNKALAIMASNFYDNPSKNLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++++S + Q+ +++G     I     +          TTP  + +   L  
Sbjct: 108 VGVTGTNGKTTISSLLYQLFKKAGFKVGLISTIKIMVDDTEYKTSHTTPDALTINHHLKL 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  GV    +E SSHG+ Q R +G+      FTNL  DH+DYH+T   Y + K  LF+ 
Sbjct: 168 MNDVGVEFCFMEVSSHGIHQKRTEGLAFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDN 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK++  +   DD     +++             Y      + +        ++  S  
Sbjct: 228 -LPKKAFVLTNVDDKNGLVMLQNTKARKYTYALKTYADYKAQILENQFNGQLLKIDGSE- 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    L G+F  YN L   G    +G++   +L  L +L  V GRF++  +  R  
Sbjct: 286 -----VWSKLIGDFNAYNMLAIYGTAQLLGLEKLEILRLLSELENVDGRFQYFISKER-I 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L  I  + +G    I V GCGGDRD+ KRP+MG IA +++   I
Sbjct: 340 TAIVDYAHTPDALKNVLDTINKLRTGNENVITVVGCGGDRDRSKRPVMGHIASEMSTTTI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+E+P++I  EI  G+        +   +R +AI+TA ++ N  D++++AGKGH
Sbjct: 400 FTSDNPRTENPDEILKEIEAGVEVQNVRKTLTIESREQAIKTACQLANSNDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET   + NG +    D ++++ +L
Sbjct: 460 ETYQEI-NGVRAHFDDYEMVQNLL 482


>gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 502

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 153/508 (30%), Positives = 236/508 (46%), Gaps = 29/508 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L  +   + I   +         +I  + +DSR I+ G +FV + G   DGH +I
Sbjct: 1   MNLKSLTERLILKTITGSTA-------VEITNLDTDSRAIRPGGLFVCVPGFNVDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI  GA AI+             +  N   + V +TR+ L + A+  +G   E   ++
Sbjct: 54  EHAIQNGAVAIMAEKELPE------LPGNITRITVPDTRRVLPILANSFFGNPTEQLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V ++   S   +  IG     I    +    TTP  I L +    +
Sbjct: 108 GITGTNGKTTTTHMVDKVLNDSNRKTGIIGTLYMKIGDHVEKTLNTTPDTIQLQRYFHAM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
            + G T+  +E SSHGLD  R+ G       FTNL  DH+D+HQ  ++Y N K  LF + 
Sbjct: 168 VAHGGTYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQNMESYRNTKELLFTQL 227

Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                  +   ++ ADDA S    KR                      +    +  +  +
Sbjct: 228 GNSDRDMQKKVVLNADDAASSYYGKRTSAQIVTYGIHNPADV--RALHIQNTGDGCRFIV 285

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  DF   + G   VYNAL A   C+  GI    +   L+    V GRF+ + T+ 
Sbjct: 286 ETPWGSSDFTMKVYGVHNVYNALAAITTCLLEGIPIQEIRNSLQDFAGVHGRFQEIKTDR 345

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              R+ VDYAH  + L+  L + + ITSG++I V GC G+RD+ KRPIM  IA   +D  
Sbjct: 346 S-FRVVVDYAHNPDGLKATLLSAKEITSGKMICVMGCRGERDRLKRPIMADIAASYSDYV 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + T DNP SEDPE+I AE++ G+       +    NR +AI+ A+EM   QD +++ G+G
Sbjct: 405 LFTTDNPFSEDPEQIIAEMLGGLSSHHAVNWEVVPNRKDAIQRAVEMAGDQDRIIITGRG 464

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGLI 496
           HET   V   +     D +++   L ++
Sbjct: 465 HET-RYVAGSQVDSFSDEEVVLSSLQVM 491


>gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
 gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
          Length = 496

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 154/499 (30%), Positives = 235/499 (47%), Gaps = 21/499 (4%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL + +    +   +  +I  +  DSR    G +FV I G   D H FIP A   G
Sbjct: 3   KRLEELADLVPGARIAGDKCTEITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++             +     +L V + ++ L L     Y        ++ +TGT+G
Sbjct: 63  ARAVLTERD------KVAVPPGISVLHVPDLQEALDLIVPYFYDYPARAMRVIGITGTNG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++ +  V+ + + +G     IG     +         TTP  I + + L+ + ++G+  
Sbjct: 117 KTTTSYLVRAMLRHAGRRVGLIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDA 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE---ELLPKE 241
           V +E SSH LDQ R+ GI+     FTNL +DH+DYH+T + Y  AK RLF+   E   KE
Sbjct: 177 VVMEVSSHALDQGRVAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKE 236

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               I   D  + ++M+   +       V         K        +        +   
Sbjct: 237 GKTAILNADDAAAKMMRAHTHCPLITYGVDMPAALTARKIRLGQDGMELTIAYAGAELPA 296

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G F VYN L AAG  +A  + ++ +   L     VPGRFE V        + VD
Sbjct: 297 VQTGITGLFNVYNVLAAAGAALAEQVTASDITAALAAFSGVPGRFELVRAGQ-DFSVIVD 355

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT + +E +L+  R +T+GRII VFGCGGDRD+ KRPIMG+IA +L D+ ++T DNPR
Sbjct: 356 YAHTPDGMENVLRTARAVTTGRIITVFGCGGDRDRTKRPIMGRIAAELGDVIVLTSDNPR 415

Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDP  I  E+  G+        + +  +R  AI  A++     D +V+ GKGHET  I+
Sbjct: 416 TEDPAAILDEVEAGVLPAIGGKPYEKLVDRRTAIFHAVQTARAGDTVVILGKGHETYQIL 475

Query: 476 TNGEKKMSVDCDIIREILG 494
            +G      D +   E + 
Sbjct: 476 KDGT-IHFDDRETAAEAIR 493


>gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 488

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 151/466 (32%), Positives = 231/466 (49%), Gaps = 14/466 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    AY ++  +  
Sbjct: 15  RDPLIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAV----AYEVEGSNVL 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
             ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V Q     G  
Sbjct: 71  PLTDVPLIPVKGLAAQLSDIAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQR 130

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              +G   T      Q  R TTP PI +   L+ L   G   V++E SSHGLDQ R   +
Sbjct: 131 CGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATAL 190

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TNL RDH+DYH T +AY  AK +LF           +  DD + +++      
Sbjct: 191 AFDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWPNLNCRVINL--DDDFGRQMAGLKQE 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +     S      +++ ++     +  + T+     +      L G F + N L A G  
Sbjct: 249 SRLITYSQLDSSAYLYCREAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +L+ +R    G
Sbjct: 309 LGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKG 367

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
           R++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPR+E   +I A+I  G       
Sbjct: 368 RLLCLFGCGGDRDRGKRPLMAEVVERLADGICVTDDNPRNESSSQIFADIRPGFTAADKV 427

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                R +AI   I   +  DV+V+AGKGHE    + +G+++   D
Sbjct: 428 SFIEGRAQAIAELIAGASADDVVVLAGKGHEDYQEI-SGQRQPFSD 472


>gi|332762646|gb|EGJ92911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 4343-70]
 gi|333009179|gb|EGK28635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-218]
          Length = 495

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 171/505 (33%), Positives = 251/505 (49%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DS    AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSCVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E  
Sbjct: 174 DQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-- 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFS 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 292 SSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG I
Sbjct: 471 YQIVGNQRLDY-SDRVTVARLLGGI 494


>gi|322615944|gb|EFY12861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620728|gb|EFY17588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623920|gb|EFY20757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627368|gb|EFY24159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630675|gb|EFY27439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638105|gb|EFY34806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322676402|gb|EFY72473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|323216558|gb|EGA01284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219907|gb|EGA04385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225813|gb|EGA10033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228645|gb|EGA12774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236741|gb|EGA20817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239758|gb|EGA23805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242194|gb|EGA26223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249382|gb|EGA33298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252285|gb|EGA36136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256625|gb|EGA40355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262994|gb|EGA46544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265479|gb|EGA48975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271733|gb|EGA55151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 471

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 161/474 (33%), Positives = 235/474 (49%), Gaps = 14/474 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  EN+  +AVTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--- 266
           TNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++  + V        +  +    + +    L G F V N L+A    +A+
Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++ 
Sbjct: 299 GYPLTDLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLW 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR+E+P  I  +I+ G+         
Sbjct: 358 CVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVM 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             R EA+   I      DV+++AGKGHE   IV         D      +LG+I
Sbjct: 418 EGRAEAVTNVIMQAKDNDVVLIAGKGHEDYQIVGTQRLDY-SDRVTAARLLGVI 470


>gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 489

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 148/474 (31%), Positives = 244/474 (51%), Gaps = 18/474 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR ++ G ++VAI G + DGH FI +A+++GA  +V     SL D       +
Sbjct: 17  IRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVP----PD 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS-FQ 146
            P + V + R+  S  ++R+YG    +  ++ VTGT+GK++   ++  + + +G+     
Sbjct: 73  VPYVRVTSARRAASALSNRVYGFPSRHLTVVGVTGTNGKTTSVHWLTHVLRFAGMRVGML 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +         +LTT     L +AL  +   G TH  +E SSHG+ QHR   +    
Sbjct: 133 SSVFNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDL 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL R+H+D+H + + Y  AK RLF  L  ++  AI+  DD Y+  + +   N    
Sbjct: 193 AIFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAE---NCVAP 249

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G +   +  + V     + +V+I +   +  + +   PG + +YN L        +
Sbjct: 250 IVTYGVRSGDVRGRVVETDGWRTRVSIRLPNGEKLEGVLHHPGMYNLYNLLAVVAAAYVL 309

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +  +   +  L  +PGR   +     G  + VDYAHT ++L  IL   R  TSGR+ 
Sbjct: 310 GVSADDIAGVIPTLPTIPGRMHVIRPEH-GPTVIVDYAHTPDALRQILSTARQWTSGRVW 368

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI----- 440
           +VFG  G+RD+GKRP MG IA  +AD  ++T D+  SEDPE+I  EI+ G          
Sbjct: 369 LVFGGRGERDRGKRPEMGAIAASMADHVLITTDSSYSEDPERIANEILAGAQRVHRARCD 428

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +R +AI  A+   N +DV+++ G+GHE+  +V  G +    D D++RE L 
Sbjct: 429 VVLDRAQAIERAVIEANDEDVILITGRGHESFQVVG-GLRLEQTDADMVREALS 481


>gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132]
 gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans ND132]
          Length = 507

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 146/477 (30%), Positives = 226/477 (47%), Gaps = 17/477 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR IQ G  FVA+ G    G  +IP A+  GA  IV   A          +    +
Sbjct: 33  VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEAARDLVAPVVEKKAVAV 92

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             VDN    L   A   +        ++A+TGT+GK++ +  ++ +   SGL    +G  
Sbjct: 93  -YVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGLKVGVLGTV 151

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +     F  D  LTTP    + + L  +    V    +E SSH LDQ+R+ G+   A  F
Sbjct: 152 NYRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVF 211

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH   + YF AK +LF E       A++  DD Y + ++          + 
Sbjct: 212 TNLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQGGIGYGIG 271

Query: 270 VGY-------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                         +  + +       ++  S +GK +    PL G F   N L A  + 
Sbjct: 272 DASLVRQEVGDKPLVQGRILSMTGQGMEIETSWKGKTWVVRSPLVGSFNALNLLAAQAVG 331

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +G++    +  L     VPGR E V  N +   I+VDYAHT ++L+ + + +  +   
Sbjct: 332 LQLGLNCKD-MRRLSTFPGVPGRLERV-MNDKNLDIFVDYAHTPDALDNVQRTLAALDFK 389

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGF 439
           R+I VFGCGGDRD+ KRP+M   A   AD+A++T DNPR+EDP  I  +    + G    
Sbjct: 390 RLITVFGCGGDRDRTKRPLMAASAARYADVAVLTSDNPRTEDPAAIMDDARPGLAGAKRV 449

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +E  +R EAI+ A+  +   D L++AGKGHE   I+    K+   D +   + +  +
Sbjct: 450 MENPDRTEAIKMAVAEMEPGDALLIAGKGHEDYQIIGT-TKRHFSDKEAALKAIEEV 505


>gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
 gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
          Length = 506

 Score =  302 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 150/500 (30%), Positives = 233/500 (46%), Gaps = 20/500 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F E++  ++   ++     +  V  DSR    G +FVA+ G   DG+ ++  A+  GA A
Sbjct: 3   FEEIVRGVTTLAVRLAPVDVRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++  S    +D ++  RS+  + +V+  R+ L+  ++  +G   +   + AVTGT+GK++
Sbjct: 63  VLTDSPTVFEDLTS--RSDIGVALVEYGRRALAEVSANFFGHPEQVLKLCAVTGTNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  ++ + +     S  +G   T      + +  TTP    + +  +     G T   +
Sbjct: 121 TAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAVM 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-RLFEELLPKESPAII 246
           E SSH L Q R+ G+ L    FTNL +DH+DYH T   Y  AK              A+I
Sbjct: 181 EMSSHALVQERVWGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGVGTLPPRIAVI 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            ADD  +  +++ A         VG               V       +  +     +  
Sbjct: 241 NADDPSAGMMVEAASGCEVWTYRVGAREFDENAYEFVADDVKLGAGWTEFALVTPMGERV 300

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   VYN + A    +A G+     +    +L  VPGRFE VG N  G  + VD
Sbjct: 301 VRSQLTGRVNVYNLVAAMATGMARGLSLDECVRGAAELLPVPGRFETVG-NDLGITVVVD 359

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAHT ++L  ++   R +   GR+I +FGCGGDRD+ KRP MG+ A D +D+ IVT DNP
Sbjct: 360 YAHTDDALRNLIGLARELVGEGRVITMFGCGGDRDRTKRPKMGRAAGDGSDLVIVTSDNP 419

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           RSEDP  I A+++ G+         + NR  AIR AI +    D++++AGKGHE   +  
Sbjct: 420 RSEDPAAIAADVLVGLQDTKAIVEVELNRHVAIRRAITVAKAGDIVLLAGKGHEREQVSR 479

Query: 477 NGEK---KMSVDCDIIREIL 493
            G         D    R  L
Sbjct: 480 QGSILVSVPFDDVMEARAAL 499


>gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
 gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
          Length = 479

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 138/479 (28%), Positives = 227/479 (47%), Gaps = 18/479 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS-LQDFSA 84
            +  +  +S DSR ++ G  F A+ G++E G  +  +A+ +GA  +V  S+ + ++    
Sbjct: 2   PDIPVYGLSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGALIVVYDSSGAGVRAPEP 61

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
            +    P   V +  + L   A+R +G   E   ++AVTGT+GK+S   F+ +  Q    
Sbjct: 62  GLGFAVP---VRDLGRHLGSIAARFFGHPSETLDVIAVTGTNGKTSCTHFIAEALQPDHP 118

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++        +    +    TTP  I +   L+ L +QG    ++EASSHG  Q R++G+
Sbjct: 119 TAVIGTLGWGLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGRINGV 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 +T + RDH++YH T ++Y  AK+ L      +     +  DD     +++    
Sbjct: 179 HCRGALYTRITRDHLNYHGTFESYLAAKLGLLANPALE--FVAVTLDDPSVDAILRSVPA 236

Query: 263 AGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               +              + ++ +        + +   G+  +   P+ G+F   N L 
Sbjct: 237 GVKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYGDFNAENLLG 296

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              + + +G  +      + ++  VPGR E    N  G  + VDYAHT ++L  +L ++R
Sbjct: 297 TLAVLVGLGYPAEAAASRVGRVRPVPGRMERFREN--GLTVIVDYAHTPDALRNVLTSLR 354

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
                R+ VVFGCGGDRD+GKRP MG IA  +AD  IVTDDNPRSE  + I  +I+ G  
Sbjct: 355 RHCRERLWVVFGCGGDRDRGKRPEMGAIAARIADHVIVTDDNPRSEPGDAIVQDILAGCG 414

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                   +R  AIR AI      D+++VAGKGHE    V  G      D + +R+ L 
Sbjct: 415 ETAVTVVRDRRTAIRAAIAQAGDGDIVLVAGKGHEAFQEVA-GVFYEFSDREEVRKALS 472


>gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 485

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 149/480 (31%), Positives = 235/480 (48%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  +      +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKK 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   +++D+ R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKH-------NVSYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG     I     +   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R++ +      FTNL +DH+DYH T + YF AK +LF +L    +  I   DD Y K 
Sbjct: 181 IGRVEVLDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVI-NVDDEYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G +   +         +   + +  + +     F L G+F +YN 
Sbjct: 240 LYDEFIVDNPEIISYGIENGDLEGD----YSDDGYIDVKYKNQIEKVKFLLLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +G RII +FGCGGDRD+ KRPIM K+A DL+D+ I+T DNPR+E PE+I  ++  
Sbjct: 355 ARNIKNGSRIITIFGCGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +  + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
 gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
          Length = 487

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 151/490 (30%), Positives = 241/490 (49%), Gaps = 19/490 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL   L       R+ KI  + +DSR    G +F+A+ G+   G  F+  A+A+GA  
Sbjct: 8   LSELCADLGYC---VRDAKITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGASG 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENILAVTGTSGKSS 128
           I+     +L D       +  ++VV + R    + A R +   K     LAVTGT+GK+S
Sbjct: 65  IIADEEMNLPD-------HIGLVVVSDVRAISGIVAMRFFETDKQELRTLAVTGTNGKTS 117

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               + Q+      ++  +G            +  TTP  + + + L+  ++Q V   ++
Sbjct: 118 TVQLLAQLLGELDQAAATVGTLGFQLPTGFSPSSNTTPDVVEIHRFLASAAAQNVRWAAL 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EASSHGL QHRL G+ +   + TN+ +DH+DYH T   Y  AK ++    L      ++ 
Sbjct: 178 EASSHGLVQHRLTGLNITTAAITNITQDHLDYHGTMTEYIAAKAQILA--LSGLRAVVLD 235

Query: 248 ADDAYSKEVMKRAH-NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+   + +  +   N      ++G       +       +    T+ ++G ++    PL
Sbjct: 236 LDNPEVRALRPQVPANVQVLGFTLGEVADADAVVVAQYDADGTTATVRLDGFEYRLRLPL 295

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GEF + N L A  +  A G+    ++    +L  VPGR E VG +S    +YVDYAHT 
Sbjct: 296 VGEFYLRNTLTALFMLRAEGLRFEDLVAAAGRLRGVPGRLERVGLDS-DVAVYVDYAHTP 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++  +L+ +R      + VVFGCGGDRD+ KRP+MG+ A + AD  ++T DNPR+EDP 
Sbjct: 355 DAIARVLQVLRPTVKNDLWVVFGCGGDRDKSKRPLMGRAAAEGADWVVLTSDNPRAEDPS 414

Query: 427 KIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           KI  +I  G     +   +R  AI +AI   +  D LV+AGKGHET  I+ +       D
Sbjct: 415 KILDDIQVGCAHARLVIEDRAVAIESAIMAASPGDTLVIAGKGHETEQIIGD-VAFPFSD 473

Query: 486 CDIIREILGL 495
            ++ +  L L
Sbjct: 474 REVAQAALNL 483


>gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetospirillum magneticum AMB-1]
 gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 478

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 196/472 (41%), Positives = 264/472 (55%), Gaps = 7/472 (1%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            R+  I  +++DSR ++ G++F A+ G K DG  FIP      A A    +  + +    
Sbjct: 7   ARDVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPA-----ALAAGAVAVLAPEGSRP 61

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +     ++   N R+  +L AS  +G  P  + AVTGT+GK+S A F +QI  R G ++
Sbjct: 62  DLPPEVVLVTDANPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAA 121

Query: 145 FQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     +    +   LTTP P  L   L+ L+  GVTH  +EASSHGLDQHRLDG++
Sbjct: 122 AAIGTLGITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLDGVR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L+A +FTNL RDH+DYH    AY  AK+RLF E+LP+ + A+I AD   +   ++     
Sbjct: 182 LMAAAFTNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKR 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G  VL  G   + + L +       Q++ + + G+      PL G FQ  NAL A GL +
Sbjct: 242 GITVLGFGRTARDLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLAL 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G D    LE L  L  VPGR + V + + G  IYVDYAHT ++LE +LK +R   + R
Sbjct: 302 ACGADPVAALEALGHLDGVPGRLQQVASRANGAPIYVDYAHTPDALETVLKALRPHAARR 361

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           ++ VFGCGGDRD GKRP+MG I   LAD  IVTDDNPRSEDP  IRA +    P  IE  
Sbjct: 362 LVAVFGCGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPAGIEIA 421

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +R  AIR A+  L K DVLV+AGKGHE   IV         D    R+ + L
Sbjct: 422 DRRGAIRAAVSGLQKGDVLVIAGKGHEQGQIVGASV-LPFDDAAEARDAVRL 472


>gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
          Length = 486

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 145/472 (30%), Positives = 243/472 (51%), Gaps = 19/472 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G +FVAI G   DG  F+PQA+ +GA  IV                   +
Sbjct: 24  VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEKEVETGSAE--------L 75

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +   + R+ L   A   +        ++ +TGT+GK++    ++Q+   +G+    +G  
Sbjct: 76  ISHPSPREALGELAMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGMKVGVLGTV 135

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           S     + Q+  LTTP    L + L+ +   GV    +E SSH L Q+R+ G+K  A   
Sbjct: 136 SYRWPGYEQEAPLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCGLKFDAAVI 195

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+ +DH+DYH   + YF AK  LF+         II  DD + + +++    A    + 
Sbjct: 196 TNVTQDHLDYHGDMEEYFKAKCMLFQHYPSALKRGIINFDDPFGRRLLECYSPAIGYGMD 255

Query: 270 VGYQGKFIHLKK--VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                    L    V    +  ++ ++ +G+ ++    L G+F   N L A  + + +G+
Sbjct: 256 ASCATGCKSLCGEMVSCTGDGMRLKMTCDGEQWEIETDLIGKFNGSNLLAAQAIGLHMGL 315

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                +   ++   VPGR E V  N +G  I+VDYAHT ++L+ +L+ ++ +   ++I V
Sbjct: 316 TPKQ-MNVFKEFDGVPGRLERVR-NDQGLNIFVDYAHTPDALDNVLRTLKDLDFNKVITV 373

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGN 444
           FGCGGDRD+ KRP+M + A   +D+A++T DNPR+EDP +I  +    + G    IE+ +
Sbjct: 374 FGCGGDRDRAKRPLMAEAACRYSDVAVLTSDNPRTEDPMQIIDDARPGLKGCDHVIEEVD 433

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R +AIR A+  + + DVL++AGKGHET  I+   EK+   D + + + +  I
Sbjct: 434 RADAIRKAVAEMTEDDVLLIAGKGHETYQIIGT-EKRDFSDSEEVLKAIKEI 484


>gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris]
          Length = 495

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 155/486 (31%), Positives = 221/486 (45%), Gaps = 12/486 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            ++QL       R+ +++ +  DSR ++ G  FVAI G    G  F  QA+A GA AI+ 
Sbjct: 6   ALSQLLPDVALARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAILF 65

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVAS 131
                              + V   R  L + A   +G   +   ++ VTGT+GK+S   
Sbjct: 66  EPPAPADLPVPADA-----IAVPGLRARLGVLADHFHGAPSQAMRMIGVTGTNGKTSTVQ 120

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            + Q     G  +  IG        A      TTP  +     L+ L   G   V++E S
Sbjct: 121 LLAQALTLLGTPTGTIGTLGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVS 180

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH LDQ R+D ++     FTNL RDH+DYH     Y  AK +LF     + +   +    
Sbjct: 181 SHALDQGRVDAVQFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLRAAVVNLDDAF 240

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +             V S    G  +  + +   H+  Q T+ +         PL G F
Sbjct: 241 GRTLFAALDPALHAIGVSSRAQAGATVQAQDLQLDHHGIQFTLHIGEAAHPVRSPLLGRF 300

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L  AG   A+ I  A + E L +L  + GR   +G       + VDYAHT ++LE
Sbjct: 301 NVDNLLAVAGALHALDIAPAQIAEVLGRLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALE 360

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A
Sbjct: 361 QALTSLRSHAQDRLICVFGCGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIVA 420

Query: 431 EIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I+ G       I + +R  AI  AI M    D++++AGKGHE    V  G +    D  
Sbjct: 421 DILRGFARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKGHEPYQEVA-GVRHAFDDAA 479

Query: 488 IIREIL 493
           +  + L
Sbjct: 480 VAAQAL 485


>gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
 gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
          Length = 489

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 151/492 (30%), Positives = 240/492 (48%), Gaps = 20/492 (4%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L   L+ F +      +  +  DSR I+ G  F+AI G+ +DG LF+  A+A GA   
Sbjct: 3   ADLAPILARFAISHESIDVQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAIA 62

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
           +V              ++  I+ V    K L+  +++ YGK  E +  + VTGT+GKS++
Sbjct: 63  LVDEQCE------CTFASDKIIRVAQLDKKLAQLSAQFYGKPSEELALIGVTGTNGKSTI 116

Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S +  + Q  G  S  IG               TTPS + L   L  L       V++E
Sbjct: 117 TSMIAYLAQVCGSKSAVIGTLGWGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAME 176

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q R+   +  A  F+NL RDH+DYH   Q+Y +AK+ LF E  P+ S      
Sbjct: 177 VSSHGLVQGRVACTRFKAAVFSNLSRDHLDYHGDMQSYADAKLMLFTECNPEISVINQ-- 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD  +K  + +       V   G    + G+++    V    +           + +   
Sbjct: 235 DDEVAKLWLMQPELMDAVVYGQGKTTTHTGRYVLFDDVQYSGDGLSAQFYTSWGNTEIKC 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G+F +YN   A    +A+G    L+ + + KL  V GR +     ++     VDYAH
Sbjct: 295 PLYGQFNLYNLAAAFATLLALGYSIDLLAQAVSKLSPVAGRMQPFSEANKPTC-VVDYAH 353

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++L + L+ ++    G++  VFGCGG+RD+GKR +M + A   A+  IVT DNPR+ED
Sbjct: 354 TPDALALALQALQLHVPGKVTCVFGCGGNRDKGKRALMAQAAERFANKIIVTSDNPRNED 413

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I A+I+ G       + + +R +AI+ AIE    ++V+++AGKGHE   ++   +  
Sbjct: 414 PKAIIADILAGFNDTTHVLSEEDREQAIKMAIEQAEPEEVILIAGKGHEDYQLIGT-QVL 472

Query: 482 MSVDCDIIREIL 493
              D   + + L
Sbjct: 473 PFCDRAQVVKYL 484


>gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 504

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 159/513 (30%), Positives = 236/513 (46%), Gaps = 36/513 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L          +I           + +I  V+ DSR +  G +F A+ G + DGH F 
Sbjct: 9   MRLS--------TVIAGSGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  +GA A+V             +  +    +      F    A RL       + AV
Sbjct: 61  AEAARRGAVAVVAERPVECAPARLLLAPSARRAMALAAASFCGRPAERL------RMAAV 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V   V+   + + +    +G  S       +    TTP    +   L+ +  
Sbjct: 115 TGTNGKTTVTYLVEACARAAAVPVGVLGTISFRFPGAERPASHTTPESTAIQAVLAEMVE 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G     +E SSH L Q R+ GI+  A  FTNL RDH+DYH+  +AYF AK RLF E L 
Sbjct: 175 AGARDAVMEVSSHALAQERVAGIRFQAAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLA 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I A D +   +  +           G  G  +   +V         T       
Sbjct: 235 PGGTAVINARDPWGARLADQLGPGPRVWRYGGRAGDALRALEVRTGLAGTSATFETPAGA 294

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G+  + N L AAGL + +G+    V   L   H  PGR E    + RG  ++
Sbjct: 295 IAIRSPLVGQHNLENLLCAAGLALGLGLPPEAVARGLAASHGAPGRLER--IDGRGLSVF 352

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++L  ++  +R ++  R++ VFGCGGDRD+GKRP+MG  A   AD+AIVT DN
Sbjct: 353 VDYAHTDDALARMIAALRGLSPRRLVCVFGCGGDRDRGKRPLMGAAAAA-ADLAIVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNKQDVL 462
           PR+EDP  I A+++ G+                   ++ + +R  AI  A+E   + D +
Sbjct: 412 PRTEDPLAIIADVLPGLDRAGKPAIGAARARAGEDGYVVEPDRRAAIALAVECAREGDAV 471

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +VAGKGHE    V   E++   D D  R+ LG+
Sbjct: 472 LVAGKGHEDYQQVGA-ERRPFSDRDEARKALGI 503


>gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
 gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
          Length = 486

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 205/500 (41%), Positives = 279/500 (55%), Gaps = 28/500 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL  + F               +  I  V++DSR +  GW+F A+ G K DG  F  
Sbjct: 4   RLSDLFNRPFA-------------TDPVIAGVTADSRKVTTGWLFAALPGTKVDGRDFAE 50

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+A+GA AI+                  P++  ++ R+  +L A+  +GK P   +AVT
Sbjct: 51  GAVAKGAAAILAPEGG-------LEGLGVPVVRSEDARRAYALAAAAFWGKQPAMCVAVT 103

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKAL 174
           GT+GK+SVA F +QI  + G  +  +G                    LTTP    +A+ +
Sbjct: 104 GTNGKTSVAGFCRQIFTKLGHKAASMGTLGVVVSQPGQPDQQLTPPGLTTPDAGDVAEMI 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L+  GVTH+++EASSHG+DQ R+DG+KL A  FTN  +DH+DYH + +AY  AK+RLF
Sbjct: 164 ARLADMGVTHLALEASSHGVDQRRIDGVKLSAAGFTNFTQDHLDYHGSMEAYRAAKLRLF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L P  + A++ AD     +    A  +G  V SVG +G+ + L         Q + + 
Sbjct: 224 DTLTPAGAMAVLNADSEAFPDFAAAAVTSGQSVFSVGEEGQGLRLLSRTPTPAGQDLVVE 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            EG       PL G FQ  N LVAAGLCIA G DSA VL+ LE L    GR + VG   +
Sbjct: 284 AEGVVHHLKLPLAGAFQASNVLVAAGLCIAAGEDSAKVLKALETLEGAAGRLQRVGRGPK 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GG  YVDYAHT + L+ +L+ +R  T+G++I VFG GGDRD+GKRP+MG I   LADIAI
Sbjct: 344 GGEAYVDYAHTPDGLQTVLEALRPHTAGKLIAVFGAGGDRDRGKRPLMGAIGAKLADIAI 403

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           VTDDNPRSEDP  IRA I+   PG  E G+R  AIR A+ ++++ DVLVVAGKGHE   I
Sbjct: 404 VTDDNPRSEDPASIRAAILEAAPGAREIGDRRAAIRAAVALMSEGDVLVVAGKGHEQGQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V  G      D     + L 
Sbjct: 464 VA-GVVHPFDDVAETLQALE 482


>gi|17229155|ref|NP_485703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc sp. PCC 7120]
 gi|21362694|sp|Q8YWF0|MURE_ANASP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17135483|dbj|BAB78029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Nostoc sp. PCC 7120]
          Length = 496

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 167/500 (33%), Positives = 251/500 (50%), Gaps = 17/500 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+       ++ +   P    + ++  + ++S    AG +F+ + G + DG  F 
Sbjct: 1   MKLRELLA-----TVDSVENLPPVLADAEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFW 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA GA A +VS     ++          ++  +N  K  +  A+  YG   + +  +
Sbjct: 56  PSAIASGAIAAIVSPQAVEKNPP---HDEAVVISSNNMTKACAAIAAAFYGYPGQKLKLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++    ++ LS+  +G        F Q    TTP  + L + L+  
Sbjct: 113 GVTGTNGKTTTTHLIEFFLTKAKLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G     +E SSH L Q R+ G     G F+NL +DH+DYH   + YF AK  LF   
Sbjct: 173 VNAGCEFGVMEVSSHALAQGRVLGCPFEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPE 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  AII ADD Y + ++K          SV      + +  +    N    TI    
Sbjct: 233 -YLKGRAIINADDTYGQRLIKALSPEKVWSYSVNDSSADLWMSDLSYEPNGVTGTIHTPE 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGG 356
            +  F  PL G++ + N L A G  + +G++  L+   + +   VPGR E V  N  +  
Sbjct: 292 GNVSFRSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPEFPGVPGRMERVQINPDQDI 351

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KRP MGKI  +LAD+A VT
Sbjct: 352 SVIVDYAHTPDSLENLLKAARPFIPGRMICVFGCGGDRDRTKRPKMGKIVAELADLAFVT 411

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I  +I+ GIP  +     G+R  AIRTAI      D +++AGKGHE   
Sbjct: 412 SDNPRTEDPDRILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKGHEDYQ 471

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+   EK    D +  R  L
Sbjct: 472 ILGT-EKIHFDDREHARAAL 490


>gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 492

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 145/504 (28%), Positives = 238/504 (47%), Gaps = 30/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L            S      +E  +  ++++S+ +  G +F+A  G   DG+ +I
Sbjct: 1   MKLKELFRNIE-------SCQFKGSQEVLLTGLTANSKSLSPGNLFIAKKGKMFDGNSYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AI  GA AI+                    ++  N  +  S+ A   Y    E   ++
Sbjct: 54  KEAIQSGACAILTD-------LFDPCLKKVVQIIHPNPNEIESILARDYYQNSSEELFMV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++  ++ +          IG    I  S       TTP  I   K L  +
Sbjct: 107 GITGTNGKTTISFIIKYLLDLFHGPCGLIGTIEYIVGSHRYQATRTTPDVIENHKMLYEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR----- 232
           S  G     +E +SH L Q R++ I      F+NL  DH+DYH T + Y  AK       
Sbjct: 167 SLSGTKSAVMEVTSHALIQKRVEYIDFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGL 226

Query: 233 -LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                    E  AI+  DD + ++++K       R+     +   +    +        +
Sbjct: 227 GEQPTKKRNEKWAIVNIDDPWCEQIVK--GCQAHRLTYGIDKPADLQASHIKLSSQGTSI 284

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ +G+  +  +PL G F +YN L A G+ +   I    ++E +  +  V GR E V  
Sbjct: 285 NLTYQGQTIECFWPLLGRFNIYNCLAAIGVLLTQNIPLKEIVEKMACIPNVKGRLEKV-L 343

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N+    IY+D+AHT ++L  +LK +  I  GR++ +FGCGGDRD  KRP M   +   +D
Sbjct: 344 NNLELDIYIDFAHTDDALSNVLKTLSEIKKGRLLTIFGCGGDRDPSKRPKMAIASEQYSD 403

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++IVT DNPRSE+P  I  EI+ G      FI + +R  AI+ AIE+ +  D++++AGKG
Sbjct: 404 LSIVTSDNPRSENPISICQEIVTGFVNPNSFIVEIDRRAAIQKAIEIASPGDMILIAGKG 463

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           HET  I+++ +     D  +  EI
Sbjct: 464 HETYQILSH-QIIEFDDAKVAAEI 486


>gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
 gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
          Length = 491

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 134/501 (26%), Positives = 222/501 (44%), Gaps = 25/501 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+ K   +++             +++ + +DSR +  G  FV I G   DGH FI
Sbjct: 1   MKLKDLLTKLEYKVVKGSDT-------IEVSHLQNDSRKVSDGDAFVCIKGAGFDGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +++GA          +      +  +  ++ VD+TR  L+  ++  +G   E ++ V
Sbjct: 54  RDVVSKGA-------VAVVVMEDVEVDEDVTVVKVDDTRLALACMSADYFGNPAEKLITV 106

Query: 121 TGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +        +  G+ +  IG   TI        + TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYMVRSVLESVGIKTGLIGTIETIIGDEVTPAKNTTPESYVVQETFAKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG   V +E SS GL  HR+ G     G FTN+  DHI  ++ +        +     
Sbjct: 167 VEQGCKCVVMEVSSQGLMLHRVSGFTFDYGIFTNIEPDHIGPNEHKDFDDYLHCKSMLLK 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K     + A D   + +     +     ++  Y  K   +K                 
Sbjct: 227 QCKHGIVNMDA-DFIDRVLEGHTCDIETYGVNGDYDFKAQDIKLFTKPGCLCVSYDLKGK 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            DF     +PG F VYN+L A  +C     D   +   LE + V  GR E +  + R   
Sbjct: 286 MDFPVEIHVPGMFSVYNSLCAIAICSHFTEDVEKIQTALENVKV-KGRVEIIPISKR-FT 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAH + SLE +L +++     R++ VFGCGG+R + +R  MG+++  L+D  IVT 
Sbjct: 344 LMIDYAHNAMSLESLLTSLKQYNPKRLVTVFGCGGNRSKERRFEMGEVSSRLSDFTIVTS 403

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR E+P  I  +I+ G+      ++   +R +AIR AI      DV+++AGKGHE   
Sbjct: 404 DNPRFEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILNAKDGDVIILAGKGHEDYQ 463

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            +  G K    +  +I+EI+ 
Sbjct: 464 EIK-GVKHPMDERVLIKEIME 483


>gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena
           XCL-2]
 gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 505

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 149/507 (29%), Positives = 244/507 (48%), Gaps = 20/507 (3%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L D++   F +L    S+      E  ++ ++ DSR ++ G  F+A+ G +  G   
Sbjct: 1   MKQLADILS--FFKL--PESVLVNGATEVDVSALTIDSRQVERGTAFIALQGGQSHGMAH 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
             QAI QGA  I+   A  ++        +    P++ V +  + L+ FA   Y    E 
Sbjct: 57  AEQAIKQGASCILTDRAGLVEFNHSHQQPLNKTCPVIEVGSLNQQLATFAKWFYDAPSER 116

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
            N++ VTGT+GK+S + ++ Q+          +G            +  TT   + L   
Sbjct: 117 VNVIGVTGTNGKTSSSHYIAQMLTALNQKVALLGTLGNGWFGNLHPSINTTVDVVRLNHL 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+  + +   +V +E SSH ++  R+ GI     + T + RDH+D+H+T++AY  AK +L
Sbjct: 177 LNGFAEEQADYVVMEVSSHAIELGRIKGIDFDVLAMTQVTRDHLDFHKTEEAYQAAKKKL 236

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVT 292
           F     +       ADD   + +     N    V       +   +             T
Sbjct: 237 FLTYSSRYQVIN--ADDKVGQALFHELSNKDTIVRYSQQTAQADIVCLDSHLSRTGIHGT 294

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +++G    F  PL G+F + N L A  +  A G +   + + L  +  V GR E +   
Sbjct: 295 FTLQGGSIPFDVPLMGQFNLENVLCAVSVMAACGFEWHRIQKALVFVKAVKGRMELLTQP 354

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDL 409
                + +DYAHT ++LE ILK ++   S R   + VVFGCGGDRD GKRP+MG+IA   
Sbjct: 355 GYPS-VLIDYAHTPDALEAILKAVQHHVSDRDATVWVVFGCGGDRDTGKRPLMGEIAETY 413

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A+  ++TDDNPR+E P+ I A+I  G+        +R EAI  AI+  +  D++V+AGKG
Sbjct: 414 ANEVVLTDDNPRTELPDAIVADIKKGMHRSVHVVHDRPEAIAFAIKKASSHDIVVIAGKG 473

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495
           HE    +  G++    D  I++++L +
Sbjct: 474 HEDYQEIQ-GKRWPMSDQKIVKDLLSM 499


>gi|288549342|ref|ZP_05966779.2| hypothetical protein ENTCAN_05119 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318746|gb|EFC57684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 471

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 156/472 (33%), Positives = 237/472 (50%), Gaps = 14/472 (2%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR   +G +FVA+VG++ DG  +IPQAIAQG  A++  +     D         P++ 
Sbjct: 3   LDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAVIAEAKDEATDGEIREMHGVPVIY 62

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +    + LS  A R Y +  +   ++ VTGT+GK++    + Q  Q  G +   +G    
Sbjct: 63  LSQLNERLSALAGRFYHEPSDQLRLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGN 122

Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                      TT S + +   L+ L+ QG +  ++E SSHGL QHR+  +K  A  FTN
Sbjct: 123 GLLGNVSPTENTTGSAVDVQHVLAGLAEQGASFAAMEVSSHGLVQHRVAALKFAASVFTN 182

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RV 267
           L RDH+DYH   + Y  AK  L+         AI+ ADD   +  + +  +A        
Sbjct: 183 LSRDHLDYHGDMEHYEAAKWLLYS--THHHGEAIVNADDEVGRRWLAKLPDAVAVSMEDH 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++    G+++   +V        + ++    + +    L G F V N L+A    +A+G 
Sbjct: 241 INPNCHGRWLKAVEVKYHDRGATIRVASSWGEGEIESRLMGAFNVSNLLLALATLLALGY 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +L+  E+L  V GR E   +      + VDYAHT ++LE  L+  R   +G++  V
Sbjct: 301 PMAELLKTAERLQPVCGRMEVF-SAPGKPTVVVDYAHTPDALEKALEAARLHCAGKLWCV 359

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444
           FGCGGDRD+GKRP+MG IA   ADI +VTDDNPR+E+P  I  +I+ G+           
Sbjct: 360 FGCGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDILAGMLDAGRARVVEG 419

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+  AI    + DV+++AGKGHE   IV N       D      +LG++
Sbjct: 420 RAEAVTNAIMQAQENDVVLLAGKGHEDYQIVGNRRLDY-SDRVTAARLLGVV 470


>gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
 gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
          Length = 498

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 143/503 (28%), Positives = 227/503 (45%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D +     EL+           E ++++VS DSR  + G +FV + G + D HLFI
Sbjct: 1   MVLSDWLEGLDYELLQGS-------LEVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ    G   IV+     L++    +     +L V + R+ L+L ++  +G     ++ V
Sbjct: 54  PQVEEAGVRVIVIERP--LEELLKAVSPQVTVLRVKDGRRALALLSAARFGYPARKMITV 111

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        ++ I + +G     IG   T I      N  TTP    L +A + +
Sbjct: 112 GVTGTKGKTTTTHMIKAILEAAGKKVGMIGTNGTVIGDRVTPNLNTTPESYQLHQAFADM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  ++ +E SS G+  HR DG+    G FTN+  DHI     + A F   +     L
Sbjct: 172 VEAGCEYMIMEVSSQGIKMHRTDGLFFDYGLFTNISPDHIG--PDEHADFGEYLYYKSRL 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
           +      ++   D + + ++K A             G     +     +  ++  +  E 
Sbjct: 230 MTMCKVGLVNRGDEHYEGIIKDASCRLYTYCVAEGDGASADFEARNIRYVAEENFVGTEF 289

Query: 297 ----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D    +PG F V NAL A  LC  +G+D    + H  +   + GR E V T+
Sbjct: 290 DVTGWLSMDVRLGIPGLFNVDNALAAMSLCSFMGLD-KQRMSHALEHIRINGRMEIVHTS 348

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            R   + VDYAH + S+E +L  +R     R++ VFGCGG+R + +R  MG+I   +AD+
Sbjct: 349 KR-CTVLVDYAHNAVSMESLLGTLRNYHPKRLVCVFGCGGNRSKDRRYSMGEIGGRMADL 407

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I+T DN R E PE I A+I   I      F+E  +R +AI  +IE     D++ + GKG
Sbjct: 408 CILTADNSRYEKPEDIIADIRSSIEKTGGDFVEIPDRRQAIEYSIENARPGDMIAIIGKG 467

Query: 469 HETVHIVTNGEKKMSVDCDIIRE 491
           HE    +  G +   +D ++I E
Sbjct: 468 HEDYQEIC-GVRHHFLDREVIEE 489


>gi|269137990|ref|YP_003294690.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|267983650|gb|ACY83479.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|304558037|gb|ADM40701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda FL6-60]
          Length = 469

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 161/472 (34%), Positives = 229/472 (48%), Gaps = 14/472 (2%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR   AG +FVA+VG+  DG  FIPQAIAQG  A++  +    +D S       P++ 
Sbjct: 1   MDSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVY 60

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + +  + LS  A R YG+      ++ VTGT+GK++    + Q  Q  G +   +G    
Sbjct: 61  LSHLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGN 120

Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                   +  TT S + +   L  L+  G T V++E SSHGL Q+R+  +   A +FTN
Sbjct: 121 GLLGHVYPSENTTGSAVDVQHMLRTLADDGATLVAMEVSSHGLVQNRVLALPFAASAFTN 180

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--- 268
           L RDH+DYH   + Y  AK RLF      E      ADD   +  + +  +A    +   
Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFSTHHSGEKIIN--ADDETGRRWLDKLPDAVAVTVSGA 238

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G+ G+++  + V        +              L GEF V N LVA    +A+G 
Sbjct: 239 LPAGWAGRWLAARSVAYHDGGATIAFDSCWGAGTLNSRLMGEFNVSNLLVALATLLALGY 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +     +L  V GR E          + VDYAHT ++LE  L   R    G +  +
Sbjct: 299 PLAALCAASGQLQPVCGRMEVF-QAPGKPTVVVDYAHTPDALEKALLAARLHCQGLLWCL 357

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FGCGGDRD GKRP+MG IA   AD  +VTDDNPRSE+P  I  EI+ G+      +    
Sbjct: 358 FGCGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDPGLAMAIPG 417

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           R EA+  A+     QDV++VAGKGHE   +V N       D   +  +LG++
Sbjct: 418 RAEAVTAAVMQAAPQDVILVAGKGHEDYQLVGNRRLDY-SDRVTVARLLGVV 468


>gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
 gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
          Length = 483

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 148/501 (29%), Positives = 234/501 (46%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+     ++  ++          ++   + DSR +  G IF+A  G + DG+ F 
Sbjct: 1   MNLKELLQGISAKIYGKVPTL-------EVRNFTRDSRCVGVGDIFIACRGEQHDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+ +GA AI+ S              +   +V     +  +  A++ YG+  E   + 
Sbjct: 54  ADAVERGAIAILSS--------FYNPFLSIVQIVTSCVEQLEAELAAKFYGRPSEKLEVF 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++ +   S   +  IG    I    +  +  TTPS   L K  + +
Sbjct: 106 GVTGTNGKTTVTYMIKALLDHSHKPAGLIGTIEHILGEGSIHDSFTTPSACLLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  V++E SS GL+ +R        G  TN+  DH+D+H T + Y  AK +LF + 
Sbjct: 166 VKNRRKAVAMEVSSIGLELNRTAQTSFDVGILTNVTLDHLDFHGTLENYLTAKEKLFSQ- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK   A+I AD  Y+      A +          +        +       + T+   G
Sbjct: 225 LPKNGCAVINADSPYASRFCSIASSRCVTYGI--EEAAEYRACDLQLSLLGTRYTLVHRG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K +    PL G + VYN L A          +   +L  LE   +  GR E     S   
Sbjct: 283 KSYLCKSPLIGRYNVYNTLAAIAAVHERSNQELPELLVALENAPLPKGRLE--PVFSGPC 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            IY+DYAHT ++L+ +L  ++ +    GR+I+VFGCGGDRD+ KR +M ++A      +I
Sbjct: 341 PIYIDYAHTPDALDNVLATLKELMSCQGRVIIVFGCGGDRDRSKRKLMARVAERYG-FSI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR EDPE I  EI  G     +  + +R +AI  AI M + +DV+++AGKGHET 
Sbjct: 400 VTTDNPRKEDPEVIIHEICEGFTSQKYCVEQDRKKAILRAISMASDKDVVLIAGKGHETY 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I  +       D  ++ E+L
Sbjct: 460 QIFKHQT-LYFSDKQVVNEVL 479


>gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
 gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
          Length = 486

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 142/504 (28%), Positives = 233/504 (46%), Gaps = 30/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+    P           +    +I  + +D+R +  G +FV I G   DGH F 
Sbjct: 1   MELHKLLRFLQP-------YMTFKGENPEITAIVNDNRKVTPGSLFVCIEGYTVDGHDF- 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
                    A       +       +  + P++VV NT++ +++ A   YG+  +  +++
Sbjct: 53  --------AASAAKKGAAAVIAQRELDLDIPVIVVKNTKRAMAVLADAFYGQPSKQLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  +++I   +G  +  IG     I+    + + TTP  + L      +
Sbjct: 105 GITGTNGKTTTSHLIEKILADAGRKTGLIGTMYTKIADETFEVKNTTPESLTLQSTFKKM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MR 232
           +  GV    +E SSH LD+ R+ G       FTNL +DH+DYH+T   Y  AK       
Sbjct: 165 ADAGVDSAVMEVSSHALDEGRIHGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQL 224

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  +   AI+ +DD  S E  K              Q   +    +       +  
Sbjct: 225 GSSYNHEEPKYAILNSDDPASAEYEKSTAAHVISYGI--DQEADLRAINIQMTSGGTEFD 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            + G+F +YN L + G  IA GI  + +++  E++  V GRFE V   
Sbjct: 283 LISPFGKHKVSLKMIGKFSIYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAG 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDY+HT +SL+  L+ ++     RI  + GCGGDRD+ KRP+M +IA   +  
Sbjct: 343 Q-DFSVIVDYSHTPDSLKNALETVKQFALKRIFTIVGCGGDRDRSKRPLMAEIACQYSTD 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I T DNPRSEDP +I  ++  G+ G  +    +R EAI  A++  +K DV+++AGKGHE
Sbjct: 402 PIFTSDNPRSEDPIQILRDMEEGVKGESYKTIADRKEAIHYAVKNASKGDVILIAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           T   V N +     D  + +E + 
Sbjct: 462 TYQQVGN-QVFDFDDRLVAKEAIE 484


>gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 534

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 164/516 (31%), Positives = 246/516 (47%), Gaps = 39/516 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +I                   + +I  V+ DSR +  G +F A+ G   DGH F 
Sbjct: 38  MKLSAVIQGT--------GARGEAADDHEIVLVTGDSREVVPGALFFALPGAVRDGHDFA 89

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA A+GA AIV     +    +        +L+V ++R+ +++ A+  +G+  +   + 
Sbjct: 90  AQAAARGAVAIVAERPVACAPAA--------LLLVPSSRRAMAVAAANFHGRPADALRVA 141

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   V+   + + L    +G  T       +    TTP    L   L+ +
Sbjct: 142 GVTGTNGKTTVTYLVEACARAADLPVGVLGTVTQRFPGVERPASHTTPESTTLHAVLAEM 201

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G   V +E SSH L Q R+ G++  A  FTNL RDH+DYH    AYF AK RLF E 
Sbjct: 202 RAAGTRAVVLEVSSHALAQERVGGMRFAAAGFTNLTRDHLDYHGDMDAYFAAKRRLFAEH 261

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  +  A++ A D Y   +  +                 +  + V         T +   
Sbjct: 262 LAPDGVAVVNARDPYGARLAAQLGPGRRVWRYGTRADDTLRAEAVSTGLAGIAATFATPA 321

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PL G   + N L AAGL +A+GI    V   L      PGR E    + RG  
Sbjct: 322 GPIAIRSPLVGAHNLENLLCAAGLALALGIAPDAVGRGLSASAGAPGRLER--IDGRGVS 379

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I+VDYAHT ++L   L+ +R +   R++ VFGCGGDRD+GKRP+MG++A   AD+ +VT 
Sbjct: 380 IFVDYAHTDDALGRALEALRALAPRRLLCVFGCGGDRDRGKRPLMGEVAARGADLVVVTS 439

Query: 418 DNPRSEDPEKIRAEIIHGIP-----------------GFIEKGNRIEAIRTAIEMLNKQD 460
           DNPR+E PE I A+++ G+                  GF+ + +R  AI  A+ + +  D
Sbjct: 440 DNPRTEAPEAIIADVLPGLERAGAARLSARAAADGARGFLVEADRRAAIALAVSLAHPGD 499

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            ++VAGKGHE   +V    K    D +  R+ LG +
Sbjct: 500 AVLVAGKGHEDYQLVGT-TKHPFSDREEARKALGFV 534


>gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila
           RKU-1]
 gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga petrophila RKU-1]
          Length = 490

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 140/501 (27%), Positives = 234/501 (46%), Gaps = 28/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +  ++       +  L +      + +I  VS+ S  ++ G +F+   G K D H  I
Sbjct: 1   MNISTIVSN-----LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEII 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ + +GA A+VV     L         + P + V ++R F +  AS  +    +++L  
Sbjct: 56  PEVMEKGAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFEDPWKDVLTF 106

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
             T       + +      +  G     +      I   +  + +TTP  I +  A+   
Sbjct: 107 GVTGTNGKTTTTMMIYHMLTSLGEKGSVLTTAVKRILGSSYYDDITTPDAITILSAMKEN 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G    ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ L
Sbjct: 167 KEGGGKFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLL 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +  +       +    +    ++     +     L  +       +  +    
Sbjct: 227 KDDGIAILNES-------LADTFNRKSRKITFGTSKNADYRLGNIEVNWEGTRFVLETPD 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356
                     G+F  YNA  A      +G D   +   LE    V GRFE   G    G 
Sbjct: 280 GLLRVFTKAIGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGL 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VD+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LAD+ I+T
Sbjct: 340 NVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLADVVILT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            D+PR EDPE+I  ++I GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   
Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQ 459

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+   +K    D +++ EI+ 
Sbjct: 460 IIDEEKKVPFQDREVVEEIIR 480


>gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum rubarum]
          Length = 509

 Score =  301 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 158/480 (32%), Positives = 239/480 (49%), Gaps = 18/480 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY-----SLQDFS 83
           K+  +S DSR ++ G +F+   G       F+ +A+ +GA  +V          S    S
Sbjct: 28  KVLSLSDDSRQVENGALFLIRPGEGFR-WEFVDEALDRGASYLVADRKAFPEIDSRPALS 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
           + IR +  + +V+N  + +   AS  +G       ++ VTGT+GK++ +   + +C+  G
Sbjct: 87  SRIRESAGLSLVENLPRAVGQLASSWWGFPSSFLKVIGVTGTNGKTTSSFLTRSVCRAGG 146

Query: 142 LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           L    IG     +     +   TTP  I +    +     G+  VS+E SSH LDQ RL 
Sbjct: 147 LPCGLIGTVVFDVGHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEVSSHALDQDRLA 206

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR--LFEELLPKESPAIIYADDAYSKEVMK 258
           G       FTNL RDH+DYH+T +AYF AK +  ++E        A+++  D Y   + K
Sbjct: 207 GTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARLAK 266

Query: 259 RAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                G RVL+ G      I   +V    +  + T+     +      L G + + N L 
Sbjct: 267 ELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNILG 326

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A G   A+G+    + E +  L  VPGRFE V  +  G  + VDYAHT ++L  +L  +R
Sbjct: 327 AVGCGEALGLSMEKIAEGIHSLPGVPGRFERV-DSPTGFSVIVDYAHTDDALSNLLSAVR 385

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            +T G++I VFGCGGDRD+GKRP MG +A  L+D  ++T DNPR+E+PE I  EI  G+ 
Sbjct: 386 PVTRGKVITVFGCGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENPESILDEIEPGLR 445

Query: 438 G----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                ++   +R  AI  AI      D +V+AGKGHE   I+   +K    D +I R  L
Sbjct: 446 ETGTPYVRVSDRKSAIFEAIRRARPGDAVVIAGKGHENYQILG-KQKIHFDDREIARLAL 504


>gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
 gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
          Length = 487

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 243/504 (48%), Gaps = 33/504 (6%)

Query: 1   MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +D+++      ++  +   +         +  DSR ++   +FVAI G   DGH F
Sbjct: 1   MKLLKDILFGVGLTAVSGSTNLMVGT-------LCFDSRKVKLDDVFVAIKGTLTDGHKF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I +AI  GA  IV  +          + +    + VD+  K L++ AS  Y    +   +
Sbjct: 54  IEKAIDSGAVCIVCET------MPEQLVNGVTYVEVDSGNKALAIMASNYYDNPSKNLKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++++S + Q+ +++G     I     +          TTP  + + + L  
Sbjct: 108 VGITGTNGKTTISSLLYQLFKKAGFKVGLISTIKIMVDDKEYATSHTTPDAMTINEHLDL 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +GV    +E SSHG+ Q R +G+      FTNL  DH+DYH+T   Y + K  LF++
Sbjct: 168 MNEEGVEFCFMEVSSHGIHQKRTEGLVFEGAIFTNLTHDHLDYHKTFAEYRDTKKSLFDK 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+   DD     +++             Y      + +        +V     
Sbjct: 228 -LPKNAFALTNVDDKNGLVMLQNTAARKFTYALKSYADYRAQILENQFDGQLLKVD---- 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +    L G F  YN L        +G++    L  L +L  V GRF++   +    
Sbjct: 283 --DDELWTKLIGHFNAYNVLAIYATADLLGLEKLETLRLLSELDNVDGRFQYY-ISKEKI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L+ I T+ +G    I V GCGGDRD+ KRP+MG IA  +++  I
Sbjct: 340 TAIVDYAHTPDALKNVLETIGTLRTGNENVITVVGCGGDRDKSKRPVMGNIASQMSNKTI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+E P  I  E+  G+        +   NR +AI+TA ++    D+++VAGKGH
Sbjct: 400 FTSDNPRTESPSVIIEEMEAGVEPQNVKKILSIENREQAIKTACQLATANDIILVAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET    TNG++    D  II ++L
Sbjct: 460 ETYQE-TNGKRIDFDDFKIITDVL 482


>gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
 gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
          Length = 522

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 145/473 (30%), Positives = 209/473 (44%), Gaps = 20/473 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +  G  FVAI G   DGH FI  A+  GA  +V     +L   +      
Sbjct: 62  IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCE---ALPTRARERFPG 118

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V +TR  L+  A+ L+G       ++ VTGT+GK++VA  V  + +  G ++  +
Sbjct: 119 VVFARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVAYLVHHLLEALGETAGLL 178

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                          LTTP P+ L + L  +  +G T  ++E SSH LDQ R+ G+    
Sbjct: 179 STIEVRAGGETTAPALTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRVHGLDYEV 238

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FT L  DH+DYH T   Y  AK  LF+  L  ++ A+   DD     ++         
Sbjct: 239 AIFTTLSVDHLDYHDTLDDYRAAKKTLFDA-LGPDATALYNTDDEAGPTMVADTEARVVS 297

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                       + +      + ++            F        Y    A G      
Sbjct: 298 FGLDRDADIEATVLEARLDGQRVRLDGHERDTQLAGRFNASNMAAAYGTGTALGHV---- 353

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-- 384
                V + L     VPGR E +     G  + +DYAHT ++LE +L+ +R  T  +   
Sbjct: 354 --PEAVADALADAPPVPGRVEPLRFED-GTTVIIDYAHTPDALENVLRTVRDTTPAKAAL 410

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--- 441
             VFGCGGDRD GKRP MG+IA  LAD  IVT DNPR+E P  I  +I  G+        
Sbjct: 411 WCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDIRDGVERPESMRW 470

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +R EAI+ A +     DV+V+AGKGHET   +    +    D ++ R   G
Sbjct: 471 IVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGTDTR-PFDDREVARRYFG 522


>gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
 gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
          Length = 504

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 152/473 (32%), Positives = 234/473 (49%), Gaps = 18/473 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +++ +S  S+ I+ G ++ A+ G++  G  F   A+A GA A+    A + +       
Sbjct: 34  LEVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDALAAGAVAVFTDEAGADRG-----P 88

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P LVVD  R  L   ++R+YG+      ++ VTGT GK++    ++   Q++G+ + 
Sbjct: 89  AGAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGKTTTTRLLEAGLQQAGVPAA 148

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G   T  +     + LTTP    L    + +  + V   ++E SSH L   R+DG+  
Sbjct: 149 VVGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRACAMEVSSHALVMGRVDGVVF 208

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               F NLGRDH+D+H+  + Y+ AK  LF     +   A++  DDA+ + + + A    
Sbjct: 209 DVAVFLNLGRDHLDFHRDLEDYYAAKASLFTP--ERARFALVNVDDAHGRRLAEEATVPV 266

Query: 265 CRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAG 320
                      Q        V       +  +             LPG+F V N L A  
Sbjct: 267 RTFSMGRGDDAQRADWRAVDVRLRATGSEFVVVAPDGRRIPAGCALPGDFNVANTLAAVA 326

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+D A+V   +     VPGR E V        + VDYAH  +++E  ++ +R +T
Sbjct: 327 AAAEAGLDPAVVAAGIAAAGGVPGRLERVDAGQ-DFLVVVDYAHKPDAVEAAIRTLRPLT 385

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
            GR+IVV G GGDRD GKRPIM  IA  LAD+ +VTDDNPR+EDP  IRA ++ G+    
Sbjct: 386 EGRVIVVLGAGGDRDPGKRPIMAGIAARLADLLVVTDDNPRTEDPAAIRAAMLAGVVTGQ 445

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            IE G R  AIR A+      D++++AGKGHET   V +G      D +++RE
Sbjct: 446 AIEVGGRRAAIREALRRAGPGDIVLIAGKGHETGQEV-DGVVHPFDDREVVRE 497


>gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas sp. SN2]
          Length = 530

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 147/513 (28%), Positives = 230/513 (44%), Gaps = 40/513 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+ F +   + +I  ++ DSR +     FVA+ G++ DG  FIPQAI+ GA  I+  +  
Sbjct: 14  LAKFGIDAPDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQTDD 73

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQ 135
           S       +R ++ I+ +      LS  A+  Y      ++  AVTGT+GK+S    + Q
Sbjct: 74  SQAHGQMEMRDHSVIISLYQLPSMLSALAAAFYDYPALKMMTVAVTGTNGKTSTVQLLTQ 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNR-------LTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +    G  S  +G   +     ++ +        TTP+ I L   L+      V H + E
Sbjct: 134 LKDALGTRSASVGTLGSSVYEGENTQWVTTAAANTTPNAIRLQYVLAEFVQCEVRHTAFE 193

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSH L Q RL  +K     FTNL RDH+DYH T + Y  AK  L ++   +     +  
Sbjct: 194 ASSHALVQGRLSQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLEAVVLNVND 253

Query: 249 DDAYSK--------------------------EVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            ++ +                                             Q +      V
Sbjct: 254 SESQNWADYLDANAAKDGSSEEIAISKPRVTRVWTGFEPTDDVLATHKQPQDRHCFATNV 313

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               +  +  +            L G F V N L A    +A G     V+  +  L  V
Sbjct: 314 SYHSSGIRFDLVSSWGTAPIELALFGSFNVSNTLSAISCLLAQGERFENVVRVVNGLQPV 373

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E          + VDYAHT ++LE +LK+ +T T+G++  VFGCGGDRD+GKRP+M
Sbjct: 374 PGRMEVFPVGGS-ASVIVDYAHTPDALEQVLKSAKTHTAGKVWCVFGCGGDRDKGKRPLM 432

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
           G  A   AD+ ++T DN RSE PE I ++I  G+      +E+ +R  AIR  ++  ++ 
Sbjct: 433 GAAAEQHADVIVITTDNSRSESPESIASDIKAGLQRPNDAVEEADRESAIRYCLDSADEN 492

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           D+++VAGKGHE   I+   +     +  ++  +
Sbjct: 493 DIIIVAGKGHEDYQIIGTQQTDY-NERTVVARL 524


>gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
 gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
          Length = 497

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 143/506 (28%), Positives = 227/506 (44%), Gaps = 26/506 (5%)

Query: 1   MKLQDLIYKDF-PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +++      E  +          +  +  ++SDSR +Q G+ FV I G   DGH +
Sbjct: 1   MKLSEILKICSENETADFRYSVVCGDTDVDVTGITSDSRKMQDGYAFVCIKGAVSDGHKY 60

Query: 60  IPQAIAQGAEAIVV-SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           I Q I   A  IVV    Y  +D  A       ++  DNTR  L+L ++ +YG     + 
Sbjct: 61  IDQ-IKDKASVIVVLDGEYEAKDCKAA------VVSTDNTRLALALMSAAVYGNPDRKLF 113

Query: 119 AVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
            +  T  K    +        +  G+ +  IG   TI    A     TTP  I + ++ +
Sbjct: 114 TIGITGTKGKTTTTYMVKNVLEACGIKTGLIGTIETIIGDEAIPAHNTTPESIEIHQSFA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G   V +E SS GL   R  GI    G FTNL  DHI      +          +
Sbjct: 174 KMVDAGCKAVVMEVSSQGLKLDRTAGIMFDIGVFTNLEPDHIGP---NEHESFEDYLNCK 230

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L K+    I   D    + + R          +G        + +  +H   ++ ++ 
Sbjct: 231 AKLFKQCKVGIVNADDKHTQDILRGAICKVESYGIGDNADI-KAENIELLHEPGKIGLTY 289

Query: 296 EGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     +      LPG+F VYN+L A  +     +D   + E L+ + V  GR E V  +
Sbjct: 290 DCTGLVNMKVELNLPGKFSVYNSLCAIAITRHFDVDEEALKETLKHVKV-KGRIELVKVS 348

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + +DYAH + +LE IL  ++     R++ +FGCGG+R + +R  MG+++  LAD+
Sbjct: 349 D-DFTLMIDYAHNAMALESILTTLKEYHPHRLVCLFGCGGNRSKERRYEMGEVSGKLADL 407

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I+T DNPR E+PE I  +I  GI       ++  +R EAI+ AIE     D++V+AGKG
Sbjct: 408 TIITSDNPRFEEPEAIIEDIKTGIAKTTGKHVDITDRKEAIKYAIEHGEPGDIIVLAGKG 467

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE    +  G K    +  +I+E+L 
Sbjct: 468 HEDYQEIK-GVKYPMDERVLIKEVLE 492


>gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 539

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 141/521 (27%), Positives = 238/521 (45%), Gaps = 41/521 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+ +          +      + +I  +  DSR +  G +FV + G K DG+ F 
Sbjct: 8   MTLAELLDE-----ARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYEFA 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QAI +GA AIV SS     +           +VV++T   LS  A   YG   +N  ++
Sbjct: 63  HQAIEKGAVAIVSSSEVLPAEGLEAS------VVVEDTNILLSGLAGAFYGHPSKNLAVV 116

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176
            +TGT+GK++ +  ++ I +  GL +  +G  +         +   TTP  ++L K ++ 
Sbjct: 117 GITGTNGKATTSYLIRSIYEAMGLQAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMAS 176

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G     +E SSH +   R   +      FTNL  D  D+H+++  Y  A  +LF +
Sbjct: 177 MVHHGTDACIMEVSSHAMHLGRCKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAK 236

Query: 237 LLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++  E    I   D       V +   +      ++G +   ++  +V     + ++ + 
Sbjct: 237 MVNPEKHRKIVNIDDPQSDYFVTQGNQDVPVVTYAMGNKNADVYPLEVQLSLFESELLVR 296

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G   VYN L A  + IA+      ++  +E++  VPGR E +    +
Sbjct: 297 TPRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELI-DEEQ 355

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VD+A+T + L  +L  +R     RII V G  GDRD+ KRP+M KIA D +D+ I
Sbjct: 356 AFAVIVDHANTPDGLSRLLDTVRECGPRRIITVLGSQGDRDKAKRPLMAKIATDKSDVCI 415

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GN-----------------RIEAIRTA 452
            T DNPRSEDP  +  +++ G+   +E+      +                 R  A+R  
Sbjct: 416 FTSDNPRSEDPLDVIDDMLAGVGWSMEEYCKWGEDDYYPPLPNGHRLFCYEIRTIAVRAG 475

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + M  + D +V+AGKGH T  I+ +  K+   D +  RE L
Sbjct: 476 VAMGEEGDAVVIAGKGHNTYEIIGDN-KEYFDDREECREAL 515


>gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
          Length = 474

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 163/474 (34%), Positives = 249/474 (52%), Gaps = 28/474 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  +  +S++S+ I+A   F AI     +G+ FI  A+ +GA  ++     +  +   
Sbjct: 9   FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKKNTTNK-- 62

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V++ ++ L       Y K P+ ++AVTGT+GKSSV S++ QI    G  +
Sbjct: 63  -------VIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115

Query: 145 FQIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +       LTT   +   K    L+  G+ +++ EASSHGLDQ RL
Sbjct: 116 ASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRL 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K+    FT+  +DH+DYH T++ Y  AK++LF + L K+  AI+ +D    K +   
Sbjct: 176 GDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKDY 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + L VG  G    + K  +    Q +    + K++DF  P+ G FQ  N L+A 
Sbjct: 236 LDKHKIKYLCVGANGNC-KITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAG 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                   D + V+  L K+  V GR E V   +    I++DYAHT ++LE  L  ++ I
Sbjct: 295 LSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKNI 350

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++ V+FGCGG+RD  KR +MGKIA  +AD  IVTDDNPR EDP+ IR EII GI 
Sbjct: 351 KAKGGKLSVIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGIV 410

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
              +IE  +R EAI+  I  L K D+L++AGKGHE   I+ + EK    D ++ 
Sbjct: 411 TTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQIIGD-EKIRFDDAEVA 463


>gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. AS9601]
          Length = 511

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 134/503 (26%), Positives = 242/503 (48%), Gaps = 22/503 (4%)

Query: 10  DFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +L++ + I P     +++IN +S +S+ +Q G +F+ + G   DG  F  +AI  GA
Sbjct: 5   KLHKLLDLVGIIPSSNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           EA ++  A + Q   +  R    ++  DN         +  + +    +  + VTGT+GK
Sbjct: 65  EAAIIGPA-AKQKIGSIDRKRILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++ G  +   G   +    F++    TT     L   L+          
Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPA 244
            +E SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +  F   L ++   
Sbjct: 183 ILEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGI 242

Query: 245 IIYADDAYSK-----EVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   D +       ++ KR+     ++    +    F  +       +          +
Sbjct: 243 CVLNHDDHWISKLSSDLKKRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355
                 PL GEF + N + A  +   +      + + ++     PGR E +  +      
Sbjct: 303 KIQLFVPLVGEFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSR 362

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +L+D  
Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQL 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPR+E+P+KI  +I+ GI      I + +R +AI  +I+  NK+D++++AGKGHE
Sbjct: 423 FITSDNPRTEEPQKIVNDILMGIKKREKIIIEIDRFKAINESIQFANKKDIVLIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ + +     D  I  ++L
Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504


>gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella pealeana ATCC 700345]
 gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC
           700345]
          Length = 488

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 151/497 (30%), Positives = 227/497 (45%), Gaps = 19/497 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++DL+   F     +              E++ DSR +QAG++FVAI G + DG  FI
Sbjct: 1   MLIRDLLAPWFHYSGAE-----------DFLEITLDSRAVQAGYLFVAIPGYQVDGRKFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-A 119
             A  +GA A +V +    +  +        IL     R+  +L A           +  
Sbjct: 50  AAAFERGASAALVHTDSPEKHGTVVNDGGLQILFFQLNRQISALAAQAYPLSQSRPQIVG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+SV   + Q+       +  +G           D+  TT  PI L K L  + 
Sbjct: 110 VTGTNGKTSVTQLIAQLQLLQSKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQGVE 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G    ++E SSHGL Q R++ +      FTNL RDH+D+H T + Y  AK RLF+   
Sbjct: 170 QRGADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDFHHTMEEYGIAKKRLFQFAN 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +     I       + +   A +        G     I+ K           T+     
Sbjct: 230 LRGGLINIDDV-VGREWLADLASDKLLGFSVKGDSTADIYTKDNHFHDGGVSCTLVWPTG 288

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     PL G+F + N + A G    +G D   ++    KL  V GR E   T+  G  +
Sbjct: 289 EAQLNSPLLGDFNLSNLVAALGALYLLGEDMHTLVALAPKLEPVAGRMERF-TSKDGVTL 347

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT +++E  LK +R    G++  +FGCGGDRD+GKRP+M   A   AD  +VT D
Sbjct: 348 VVDYAHTPDAIEQALKALRVHCKGQLWCLFGCGGDRDKGKRPMMAASAEQFADRVMVTSD 407

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           N RSEDP  I ++I+ G+      + +  R  AI+  +      D++++AGKGHET   V
Sbjct: 408 NCRSEDPNAIISDILAGLQHPQQALSQVERQVAIKEIVAQAASGDMVLLAGKGHETYQEV 467

Query: 476 TNGEKKMSVDCDIIREI 492
            NG+K    +    + I
Sbjct: 468 -NGKKLNYDERAFAKAI 483


>gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
 gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
          Length = 492

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 157/501 (31%), Positives = 230/501 (45%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+     N P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDGK---FTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY    ++      
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYG--AIKSRLFYW 229

Query: 239 PKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E+   +K+             +   I +    A  +  +     
Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQADICITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VLE L K+    GR +    NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMD-CIMNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I         VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQSAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P       +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPEYVEADRAAAIRYAVERAATNDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I  + L
Sbjct: 469 QDVQ-GVKHHFSDFEIAEKAL 488


>gi|300869516|ref|ZP_07114098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332489|emb|CBN59296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
          Length = 516

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 161/518 (31%), Positives = 254/518 (49%), Gaps = 30/518 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+      + N          + ++  ++++S   Q G +F+ + G + DG  F 
Sbjct: 1   MKLKELL----ATIPNISLSISHPALDSQVKGLATNSHACQPGDLFLGMPGTRVDGGDFW 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI----------------RSNTPILV-VDNTRKFLS 103
             AIA GA A +VS+  + +                          P ++ V +  +  +
Sbjct: 57  QGAIASGAIAALVSTQAAEKALEQGSGGAGERGSGGAGERGSEGEVPCIIPVVDMTQACA 116

Query: 104 LFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
             A+  YG       ++ VTGT+GK++    ++ +  ++ L +   G   T     Q+  
Sbjct: 117 HIATAFYGYPGNQLKLVGVTGTNGKTTTTHLIEFLLSKAELPTALFGTLYTRWPGFQETA 176

Query: 162 L-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           + TTP  + L K L+     G     +E SSH L Q R+ G       FTNL +DH+DYH
Sbjct: 177 IHTTPFAVELQKQLAAAVEAGSKFGIMEVSSHALAQSRVLGCPFEVAVFTNLTQDHLDYH 236

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +  + YFNAK  LF      +  AI+ ADDAY + ++   ++      S       +   
Sbjct: 237 RDMEDYFNAKALLFSSN-YLKGRAIVNADDAYGRRIIDSLNSEQVWSYSTNDSKADLWAS 295

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +    N  +  +     + DF  PL G++ + N L A G  + +G++ + ++ +L +  
Sbjct: 296 DLKYEPNGVKGILHTPKGEADFYLPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLPEFP 355

Query: 341 VVPGRFEFVGTNS-RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            VPGR E V  +  +   + VDYAHT +SLE +LK  R    GR+I VFGCGGDRD+ KR
Sbjct: 356 GVPGRVEKVQISPVQDISVIVDYAHTPDSLENLLKASRPFIPGRMICVFGCGGDRDRTKR 415

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEML 456
           P MGKI  +LAD+ +VT DNPR+EDPE+I  +++ GI      +  G+R +AIRTAI   
Sbjct: 416 PKMGKIVAELADVTVVTSDNPRTEDPERILQDVLTGIAPEVKPLVIGDRAQAIRTAILEA 475

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              D +++AGKGHE   I+   EK    D +  R  L 
Sbjct: 476 KPGDGVLIAGKGHEDYQILGT-EKIHFDDREQARLALN 512


>gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 489

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 154/507 (30%), Positives = 245/507 (48%), Gaps = 33/507 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+DL++      ++  +          I  +  DSR   A   FVAI G + DGH F
Sbjct: 1   MKQLKDLLFGVSLHAVSGSTAVG-------IESIRFDSRETGASDAFVAIRGTEADGHRF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  A+  G  A++        +    +      + V +T+  L++ AS  YG    N+  
Sbjct: 54  IDGAVKNGVRAVICE------ELPQDLADGVTYVEVADTQLALAVMASNYYGNPSANLRL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++V++ + Q+ +++G     I     +        RLTTP  + + K LS 
Sbjct: 108 VGVTGTNGKTTVSTLLYQLFKKAGYKVGLISTIKIMVDDQEFPTRLTTPDSLTINKYLSR 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++  GV    +E SSHG+ Q R +G+    G FTNL  DH+DYH+    Y + K +LF+ 
Sbjct: 168 MNEAGVEFCFMEVSSHGIAQRRTEGLVFEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDG 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LPK + A+  ADD     +++             Y      + +              +
Sbjct: 228 -LPKSAFALTNADDKNGLFMIQNTRARKLTYALRSYADFRAQILEQQLDGQLL------K 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +D +    L G+F  YN L        +G+    +L+ L  L  V GRF+    + +  
Sbjct: 281 IQDNEVWTKLIGQFNAYNLLAIYATASLLGLGQLEILQLLSGLQTVDGRFQ-YFVSKQRI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++L+ +L  I  + +G    I V GCGG+RD+ KRP+MG IA D+++ AI
Sbjct: 340 TAIVDYAHTPDALKNVLVTINALRTGNESVITVVGCGGERDKSKRPVMGHIASDMSETAI 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR E P  I AE+  G+        +   +R +AIRTA +M    D++++AGKGH
Sbjct: 400 FTSDNPRREPPRDIIAEMEAGVEPQNVRKVLVIEDREQAIRTACKMAGGGDIILIAGKGH 459

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           ET   +  G ++   D  ++ E+L  +
Sbjct: 460 ETYQEIA-GVRRDFDDYKLVSEVLERL 485


>gi|146310295|ref|YP_001175369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter sp. 638]
 gi|167017293|sp|A4W6I8|MURE_ENT38 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145317171|gb|ABP59318.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter sp. 638]
          Length = 495

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 161/505 (31%), Positives = 241/505 (47%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+      +             R + E+  DSR   +G +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVQNV-----------PARALREMVLDSRVAASGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +   ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDDATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDQLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +   +G               TT S + +   LS L+
Sbjct: 114 VTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVNPTENTTGSAVDVQHVLSGLA 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+    
Sbjct: 174 GQGATFAAMEVSSHGLVQHRVSALKFAASVFTNLSRDHLDYHGDMENYEAAKWLLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++    V    +   +  +
Sbjct: 232 HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVDYHDSGATIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+    + ++    +L  V GR E   T   
Sbjct: 292 SSWGEGEIESRLMGAFNVSNLLLALATLLALDYPLSELVNTGARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA   ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCTGKLWCVFGCGGDRDKGKRPLMGAIAEQFADIPV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI    + DV+++AGKGHE 
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMMDAGHARVVEGRAEAVTNAIMQAKENDVVLLAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV         D      +LG +
Sbjct: 471 YQIVGAHRLDY-SDRVTAARLLGAL 494


>gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
 gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
          Length = 511

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 167/521 (32%), Positives = 244/521 (46%), Gaps = 45/521 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL     P                +I  +  DSR +++G +F A+ G   DGH +I
Sbjct: 1   MRLEDLARVINPSEAGGSLAL-------EIEGLYCDSRQVRSGGLFFALRGVATDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             +  +GA A+VV          + +      L VD+ R  +S  A+  YG   +   ++
Sbjct: 54  VASRDRGAVAVVVED-------PSRVPEGMTWLKVDDARLAMSRAAAAFYGNPTDGIPVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ +  R+G+    +G  S            TTP  + L + +  L
Sbjct: 107 GITGTNGKTTTTYLVEAVMARAGIPVAVLGTISYRFGDKTIPAPHTTPESVDLQRTIRDL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
             +G   V +E SSH L+Q R+DG +   G FTNL RDH+DYH+  ++YF +K RLF   
Sbjct: 167 VDRGAQGVVMEVSSHALEQRRVDGCRFDVGVFTNLTRDHLDYHRDMESYFESKARLFTEL 226

Query: 236 ---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +       A+I  DD Y   +   A                +  + V    +    T
Sbjct: 227 LAADDTKPRRAAVINVDDPYGARLASDAVAPVVSYGL--SPSVMVRAEMVTFSVDGISGT 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +        F   L G F +YN L A    +A+G+    +   +E    VPGR E V  N
Sbjct: 285 LVTPLGTIPFHSRLLGRFNLYNILAAVAAGVALGLSPDAIRGGIEGDVRVPGRLERV-DN 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAHT ++LE +LK +  I +GRII VFGCGGDRD+GKRP+MG+IA   +D+
Sbjct: 344 DHGITVLVDYAHTGDALENVLKTVAEIATGRIITVFGCGGDRDRGKRPVMGEIAGRFSDL 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453
           +IVT DNPR+ED   I  EI+ GI                    GF    +R EAIR A 
Sbjct: 404 SIVTSDNPRTEDAGAIIGEILGGIRSLGLREYGAEELITGFDAKGFAAVESRREAIRLAA 463

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +    DVL++AGKGHE   I+    K    D + +     
Sbjct: 464 RVARPGDVLLLAGKGHEDYQIIGT-MKHHFDDREEVAAAFR 503


>gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 488

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 153/506 (30%), Positives = 236/506 (46%), Gaps = 32/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DLI K   ++++ L       R R I+ + SDSR   AG ++VA+ G   DGH FI
Sbjct: 3   MNLEDLIKKV--QILDILG-----DRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
                        ++A     F   I ++   + V+++ K L   AS  +G   E +  +
Sbjct: 56  DA------AVAQGAAAVVCNAFPENIDTDITYIKVEDSAKALGQLASGFFGNPSEKLNLI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+SV + +  + +  G  S  I       +     +  TTP  I L K L+  
Sbjct: 110 GITGTNGKTSVTTILYDLFKYLGFKSALISTVEYRIADKVLPSTHTTPDVITLNKILAEA 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSHG+ Q R + +      FTN+  DH+DYH+T   Y     + F + 
Sbjct: 170 VEAGCEYAFMEVSSHGIHQKRTERLHFKIAGFTNISHDHLDYHKTFSEYLKT-KQSFFDG 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  ++ AI   DD   K +++                      +                
Sbjct: 229 LNPDAVAITNLDDKNGKIMLQNTKATRKSYALKTMADYHGKTTETDFNGMLLNFDGKEFW 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F +      YN L+A  + +  G  S  VL+ +  L  V GRFE +  +  G  
Sbjct: 289 TTLTGRFNV------YNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFETLK-SDGGIF 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +DYAHT ++L+ IL +I  I +   R+I VFGCGG+RDQ KRP MGKI+   + + I+
Sbjct: 342 FVIDYAHTPDALDNILDSINEIRTKNERLITVFGCGGERDQTKRPEMGKISTRKSTLTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPRSE+P  I  EI  G+       +    +R +AI+ AI+    +D+++VAGKGHE
Sbjct: 402 TSDNPRSENPGDIIKEIEAGVEPQYYSKYTSIPDRRDAIKMAIKFAEPKDIVLVAGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
               + NG+K    D + I E+  L+
Sbjct: 462 NYQEI-NGQKVHFDDKETIVELTRLM 486


>gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
 gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
          Length = 520

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 156/493 (31%), Positives = 229/493 (46%), Gaps = 22/493 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++ L +   +  ER I  +++DSR +  G +FVAI G   DGH +I +A+  GA A++  
Sbjct: 23  LDVLEMAGTEDAERMIVSLAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSGAAAVICE 82

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
           +            S    + V ++R+ L+  A   Y    E I  + VTGT+GK++ A  
Sbjct: 83  A------LPEDNGSGAVYIRVADSRRALAAAARAFYRNASERIFLIGVTGTNGKTTTARL 136

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  +    G+ +  IG      +        TTP    L      +   G     +E SS
Sbjct: 137 IADMLNSCGIPAGYIGTNLCRIAGRDISLDRTTPEAHELQALFRRMLDAGCQAAVMEVSS 196

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L   R+ G++     FTNL  +H+D+HQT   Y +AK  LF++ L  E  A+   DD 
Sbjct: 197 HALVLDRVSGLRFRCAVFTNLSMEHLDFHQTMAGYADAKQILFDQ-LDPEGFAVFNIDDP 255

Query: 252 YSKEVMKRAHNAGCRVLSVG-------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           Y+ ++  R         ++          G+               V +           
Sbjct: 256 YASQMASRVAADKRFCCTLKPQRELTLRCGRSFSAAVSSRTLGSASVELHFPDAVHTVQT 315

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG + V N L AA +   +GI    V   L K   V GR E +    +    +VDYAH
Sbjct: 316 ELPGMYNVMNLLEAAAVLSGMGIAPGHVAAVLGKPFRVEGRMERIWDTEKSRCAFVDYAH 375

Query: 365 TSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++LE  L  +  + S   R++VVFGCGG+RD+ KRP MG+IA + AD   +T DNPR 
Sbjct: 376 TPDALEKALSALGELKSSDARLVVVFGCGGNRDRLKRPEMGRIASEKADFVFLTSDNPRD 435

Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           E+PE I  EI  G+    +     R EAIR A   L   D+L+VAGKGHET   +  G K
Sbjct: 436 ENPEFILDEIECGMEGSNYRRITGREEAIREAAATLLPGDILLVAGKGHETYQEIA-GIK 494

Query: 481 KMSVDCDIIREIL 493
               D +I+RE L
Sbjct: 495 HFFSDQEILRECL 507


>gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
 gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
          Length = 522

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 211/473 (44%), Gaps = 20/473 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR +  G  FVAI G   DGH FI  A+  GA  +V     +L   +      
Sbjct: 62  IGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGARLVVCE---ALPTRARERFPG 118

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V +TR  L+  A+ L+G   +   ++ VTGT+GK++VA  V  + +  G ++  +
Sbjct: 119 VVFARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVAYLVHHLLEALGETAGLL 178

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                          LTTP P+ L + L  +  +G T  ++E SSH LDQ R+ G+    
Sbjct: 179 STIKVQAGGETTALALTTPGPLVLHRTLRRMVDRGCTACAMEVSSHALDQDRVHGLDYEV 238

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FT L  DH+DYH T   Y  AK  LF+  L  ++ A+  ADD     ++         
Sbjct: 239 AIFTTLSVDHLDYHDTLDDYRAAKKTLFDA-LGPDATALYNADDEAGPTMVADTEARVVS 297

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                       + +      + ++            F        Y    A G      
Sbjct: 298 FGLDRDADIEATVLEARLDGQRVRLDGHERDTQLAGRFNASNMAAAYGTGTALGHA---- 353

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-- 384
                V + L     VPGR E +     G  + VDYAHT ++LE +L+ +R  T  +   
Sbjct: 354 --PEAVADALADAPPVPGRVEPLRFGD-GTTVIVDYAHTPDALENVLRTVRDTTPAKAAL 410

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--- 441
             VFGCGGDRD GKRP MG+IA  LAD  IVT DNPR+E P  I  +I  G+        
Sbjct: 411 WCVFGCGGDRDAGKRPTMGRIAERLADRVIVTSDNPRTEAPVAILRDICDGVERPESMRW 470

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +R EAI+ A +     DV+V+AGKGHET   +    +    D ++ R   G
Sbjct: 471 IVDREEAIQAAADETMPGDVVVIAGKGHETTQTIGTDTR-PFDDREVARRYFG 522


>gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 491

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 216/475 (45%), Gaps = 12/475 (2%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            R+ +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++       +    
Sbjct: 13  ARDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVLFEPPAPAELPVP 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
                   + V   R  L   A + +G       ++ VTGT+GK+S    + Q     G 
Sbjct: 73  ADA-----IAVPGLRARLGSMADQFHGHPSRALRMVGVTGTNGKTSTVQLLAQALTLLGT 127

Query: 143 SSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           S+  +G        A      TTP  +     L+ L  +G    ++E SSH LDQ R+D 
Sbjct: 128 STGTLGTLGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHALDQGRVDA 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL RDH+DYH     Y  AK +LF     + +   +      +        
Sbjct: 188 VHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLQAAVVNLDDAFGRTLFASLDPA 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V S G  G  +    +   HN     + ++        PL G F V N L  AG 
Sbjct: 248 LRAIGVSSRGQGGATVRADALQLDHNGISFALRIDSTVHAVHSPLLGRFNVDNLLAVAGA 307

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A+    A + + L +L  + GR   +G       + VDYAHT ++LE  L ++R+   
Sbjct: 308 LHALDHAPAQIAQVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALASLRSHAQ 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PG 438
            R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G      
Sbjct: 368 DRLICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVIVADIVRGFARPDA 427

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            I + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 428 AIVQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAAVAAQAL 481


>gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
 gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
          Length = 485

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 155/480 (32%), Positives = 235/480 (48%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  I      +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKILKDVNLDRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKE 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   +++D+ R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKY-------NVSYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120

Query: 137 CQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG           D   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPVTRIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+D I      FTNL +DH+DYH T + YF AK +LF +L  K    I   DD Y K 
Sbjct: 181 LGRVDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVI-NIDDDYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G  G  +  +      +   + I  + +     F L G+F +YN 
Sbjct: 240 LYDEFIIDNPEIISYGIDGGDLEGE----YLDDGYIDIKYKEQVEKVKFALLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  
Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +I + +R +AI+ A+ M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter litoralis HTCC2594]
 gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 495

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 179/498 (35%), Positives = 266/498 (53%), Gaps = 22/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL          L     I      +  ++  + D R +  G +F A  G+  +G  +I
Sbjct: 1   MKL--------ARLAEAAGIAIEGGEDIAVSGFAIDHRKVAPGTVFGAFQGSAVNGEDYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+A        + A ++             +  D  R+  +L A++ +   P+ I+AV
Sbjct: 53  SQAVA--------AGAVAVVAQPEATVEGAVHIAEDTPRRAFALLAAQYFTPVPKTIVAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ + +G  +  IG    T    +    LTTP  +     +S L+ 
Sbjct: 105 TGTNGKTSTVEMTRQLWRMAGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV+ EASSHGL Q+R +G+ + A +FTN  RDH+DYH T   YF AKMRLF+E++ 
Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGLPVAAAAFTNFSRDHLDYHGTMDEYFEAKMRLFDEVVD 224

Query: 240 KESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
               A+++  +  ++ + ++RA     R+ +VG QG+ I L+        Q++ I   G+
Sbjct: 225 AGGTAVVWTGNSEWTAQAIERARQRELRLFTVGEQGEDIRLRARTPTQLGQELEIEHAGE 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL GE+QV NAL AAGL IA G D A V + + +L  V GR E     + G  +
Sbjct: 285 TRKLRLPLIGEYQVANALTAAGLAIATGTDPAAVWDGVSRLQPVRGRLERAVITATGAPV 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAHT ++LE  L  +R    GR++ +FG GGDRD GKR  MG++A  +AD  IVTDD
Sbjct: 345 YVDYAHTPDALEAALAALRPHVEGRLLCIFGAGGDRDTGKRAPMGEVASRMADAVIVTDD 404

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NPR EDP  IR +++ G      E  +R EAIR  IE    +D++++AGKGHET  I+ +
Sbjct: 405 NPRGEDPAAIRGQVLEGAGDNAREMADRREAIREVIESAAAKDIVLIAGKGHETGQIIGS 464

Query: 478 GE---KKMSVDCDIIREI 492
           GE    +   D  + RE 
Sbjct: 465 GENMRVEPFDDVQVAREC 482


>gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
 gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
          Length = 490

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 234/501 (46%), Gaps = 28/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +  ++       +  L +      + +I  VS+ S  ++ G +F+   G K D H  I
Sbjct: 1   MNISTIVSN-----LKDLILEVRAPYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEII 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ + +GA A+VV     L         + P + V ++R F +  AS  +    +++L  
Sbjct: 56  PEVMEKGAVAVVVEKEIDL---------DFPHIQVFDSRYFEAKVASLFFEDPWKDVLTF 106

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
             T       + +      +  G     +      I   +  + +TTP  I +  A+   
Sbjct: 107 GVTGTNGKTTTTMMIYHMLTSLGERGSVLTTAVKRILGSSYYDDITTPDAITILSAMKEN 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G    ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ L
Sbjct: 167 KEGGGKFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLL 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +  +       +    +    ++     +     L  +       Q  +    
Sbjct: 227 KDDGVAVLNES-------LADAFNRKSRKITFGTSKNADYRLGNIEVNWEGTQFVLETPD 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356
                     G+F  YNA  A      +G D   +   LE    V GRFE   G    G 
Sbjct: 280 GLLKVFTKAIGDFNAYNAAAAIAALHQLGYDPKELASSLETFTGVEGRFEVVRGAKKIGL 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VD+AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++A  LA++ I+T
Sbjct: 340 NVVVDFAHSPDALEKLLKNVRKISQGRVIVVFGAGGNSDRGKRPMMSEVASKLANVVILT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            D+PR EDPE+I  ++I GI     ++   +R EAI TA+ + N+ D +V+AG+GHE   
Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAGRGHERYQ 459

Query: 474 IVTNGEKKMSVDCDIIREILG 494
           I+   +K    D +++ EIL 
Sbjct: 460 IIDEEKKVPFKDREVVEEILR 480


>gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
          Length = 502

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 141/507 (27%), Positives = 222/507 (43%), Gaps = 26/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ ++I K    +I+          +  +  ++SDSR + AG  FV I+G   +GH +I
Sbjct: 5   MKISNIIEKINASVISGSC-------DADVTGLTSDSRKVTAGGAFVCIMGAVSNGHTYI 57

Query: 61  PQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
              I +GA  IVVSS Y        A I  N  ++  D+TR   +L ++  +G   E + 
Sbjct: 58  QDVIGRGAGLIVVSSKYDYMQHFSDAKIPENVTVVETDDTRLAYALMSAAWFGYPAEKLF 117

Query: 119 AVTGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
            +  T  K    +        +  G  +  IG   TI     +    TTP    + ++ +
Sbjct: 118 TIGITGTKGKTTTTYMIRNVLESCGHKTGLIGTIETIIGDEHKPAHNTTPESYEIQESFA 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   G   V +E SS GL  +R  GI+   G FTN+  DHI      +          +
Sbjct: 178 KMVEAGCEAVVMEVSSQGLMLNRTAGIQFNIGVFTNIEPDHIGP---NEHSSFEDYLSCK 234

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L ++    I   D    + +                       K     + +  T   
Sbjct: 235 AKLFRQCDIGIVNADDEHVDRILANATCRVEKYGFSETADIRAADKELLYEHGKLGTKYH 294

Query: 296 EGK--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR----FEFV 349
                + D    +PG F +YN+L A  +     +D   + + L  + V           V
Sbjct: 295 VSGLVNLDIELCMPGNFSIYNSLCAIAVTRHFNVDEQRLKKALYDVRVRGRIDIVDLAEV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             + R   I VDYAH + +LE +LK ++     RI+ VFGCGG+RD+ +R  MG+++  L
Sbjct: 355 NASRRDFTIMVDYAHNAMALESLLKTLKEYNPKRIVTVFGCGGNRDRDRRFEMGEVSGRL 414

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +D  I+T DNPR+E+PE I A+I+ GI       +E  +R EAI+ A++     DV+VVA
Sbjct: 415 SDFTIITSDNPRNEEPEAIIADIVTGISRTSGRHVEIADRREAIKYAVDNAQPGDVIVVA 474

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKGHE    +  G K    D ++I E 
Sbjct: 475 GKGHEDYQEIK-GVKHHMDDRELIIEA 500


>gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
 gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
          Length = 496

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 141/498 (28%), Positives = 232/498 (46%), Gaps = 29/498 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+ +   +++           E ++  + +DSR ++ G +FV I G   DGH + 
Sbjct: 1   MRLDTLLERLEYKVVQGS-------AETEVTTLINDSRKVENGSVFVCISGAVSDGHKYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +   +GA A+VV            + ++  ++ V++TR  L+L ++  +G   E   I+
Sbjct: 54  AEVAEKGAAAVVVEKDVE-------VPADVTVIKVEDTRYALALMSAAYFGYPAEKLKIV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I + +G     IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYMIKSILEETGHKVGLIGTIEAIIGEKKIPAANTTPESYTIHQYFAEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SS GL  HR  GI    G FTNLGRDHI      +       +  + L
Sbjct: 167 VKEGCDCVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGP---NEHKDFEDYKRCKGL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
           L K+    I   D    E +               +   +  +++ V             
Sbjct: 224 LFKQCRLGIANVDDKYFEDVFSGATCKVETFGFSEKADLRAENVQLVSRPGYLGVAYHVA 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PG F VYN+L A  +C    + + L+ + L+K  V  GR E V  +   
Sbjct: 284 GVMDFDVEIDIPGTFSVYNSLTAISVCRHFEVPAELIKDALKKAKV-KGRIEMVKVSD-D 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P+ I  +I  GI      ++E  +R EAI+ AI      DV+V+AGKGHE 
Sbjct: 402 TSDNPRFEEPQAIIDDIKTGIGRTNGKYVEICDRKEAIKYAISHGEVGDVIVLAGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDII 489
              +  G K    +  +I
Sbjct: 462 YQEIK-GVKYPMDERVLI 478


>gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella piezotolerans WP3]
 gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans
           WP3]
          Length = 488

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 147/498 (29%), Positives = 222/498 (44%), Gaps = 21/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M ++DL+   F             +   ++ N+++ DSR ++AG +FVA+ G + DG  +
Sbjct: 1   MLIRDLLAPWFH------------YSGIEVFNDLTLDSRALKAGDLFVAVPGYQVDGRQY 48

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENIL 118
           I  A+  GA A++V +    +  + +      I      R+   L A           I+
Sbjct: 49  IQAALDNGAAAVLVHTDSPEEHGNISTDDGLLISFFQLNRQVSVLAAQAYPLSSKRPKII 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV   + Q+ Q     +  +G           D+  TT   I L K L   
Sbjct: 109 GVTGTNGKTSVTQLIAQLQQLQSKQTAVMGTLGNGLWGELVDSGNTTADAITLIKQLQNF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   ++E SSHGL Q R++ +      FTNL RDH+DYH T +AY  AK RLF   
Sbjct: 169 EKSHADTCAMEVSSHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMEAYGAAKQRLFTFS 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +            +  + +            G     I+ K+          T+    
Sbjct: 229 SLRAGLINCDDAI-GASWLAQATSTKTLGFSIKGNTKADIYAKQCLYHDGGVTCTLVWPE 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +     PL G+F + N + A G    +G D A ++     L  V GR E   T+     
Sbjct: 288 GEAKLQSPLLGDFNLSNLVAALGALYLVGEDMAAIVRLASALTPVAGRMERFTTSG-NVT 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +++E  L+ +R      +  +FGCGGDRD GKRP+M   A   AD  +VT 
Sbjct: 347 LVVDYAHTPDAIEQALQALRVHCKSELWCLFGCGGDRDSGKRPMMASSAEQFADHVMVTS 406

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DN RSE+PE I A++  G         + NR  AIR  + +    D++++AGKGHET   
Sbjct: 407 DNARSENPEDIIADVFSGFTEPQKAQSQVNRKTAIREVVALAKPGDMVLLAGKGHETYQE 466

Query: 475 VTNGEKKMSVDCDIIREI 492
           V NGEK    +    + I
Sbjct: 467 V-NGEKLNYDERAFTKAI 483


>gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter lovleyi SZ]
 gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ]
          Length = 506

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 171/524 (32%), Positives = 262/524 (50%), Gaps = 45/524 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+++   +  +          +  ++ ++ DSR + AG +F A+ G+K DGH FI
Sbjct: 1   MLLEQLLHEVPLQATHG-------NLDVTVSALTCDSREVTAGTLFFALHGSKVDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+          +A  + + ++      P L V N R+ ++L A+R +G    ++  +
Sbjct: 54  SQAVT-------AGAAAVVLEDASYAPEQVPWLQVTNGRQAMALMAARFFGNPTRDLPLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ I   +GL    +G  S    +   +   TTP    L      L
Sbjct: 107 GITGTNGKTTTSYLLEGILTAAGLPPAVLGTISYRFGTTCIEASHTTPESTELQGIFRQL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G     +E SSH L+Q R+DG     G FTNL RDH+DYH T QAY +AK RLF EL
Sbjct: 167 ADAGAQAFVMEVSSHSLEQRRVDGSVFDIGVFTNLTRDHLDYHGTMQAYGSAKQRLFSEL 226

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L  +       A+I ADD  ++E ++ A     R       G  + +++  +  N     
Sbjct: 227 LRPDDRTPLRHAVINADDPAAEEFIRAAACPVIRYGL--APGSEVTVRETTSSVNGISAI 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     +  F   L G F + N L AA   +A+G+    +++ +E+   VPGR E V  N
Sbjct: 285 LVTPQGEQPFHSRLLGGFNLSNILAAAAAGVALGLPLQAIIQGIEQHTTVPGRLERV-EN 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G    VDYAHT ++LE +L  ++ +   RII VFGCGGDRD GKRPIMG+IA   +D+
Sbjct: 344 RAGVTCLVDYAHTGDALENVLSTLKDLAGARIITVFGCGGDRDNGKRPIMGRIAAGYSDL 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAI 453
           A+VT DNPR+EDP +I  +I  GI                    GF+   NR EAIR A+
Sbjct: 404 AVVTSDNPRTEDPHEILRQIRAGILPLGLREYRPDELTAPPEDKGFVMLENRREAIRLAV 463

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
            +    D+L++AGKGHE   I+    K+   D +         +
Sbjct: 464 RLARPGDILLLAGKGHEDYQIIG-QTKQHFDDREEAANAFRERI 506


>gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
 gi|15988380|pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
          Length = 498

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 170/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E + DSR   AG +FVA+VG++ DG  +IP
Sbjct: 4   NLRDLLAPWVPD-----------APSRALREXTLDSRVAAAGDLFVAVVGHQADGRRYIP 52

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N+  + 
Sbjct: 53  QAIAQGVAAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 112

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G  S   G               TT S + +   L+ L 
Sbjct: 113 VTGTNGKTTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 172

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  + E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  A   L+ E  
Sbjct: 173 DQGATFCAXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSE-- 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AII ADD   +  + +  +A        ++    G+++   +V    +   +  S
Sbjct: 231 HHCGQAIINADDEVGRRWLAKLPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFS 290

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T   
Sbjct: 291 SSWGDGEIESHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRXEVF-TAPG 349

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+ G IA + AD+A+
Sbjct: 350 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLXGAIAEEFADVAV 409

Query: 415 VTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           VTDDNPR+E+P  I  +I+ G            R EA+  A+    + DV++VAGKGHE 
Sbjct: 410 VTDDNPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKGHED 469

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             IV N       D   +  +LG+I
Sbjct: 470 YQIVGNQRLDY-SDRVTVARLLGVI 493


>gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
          Length = 476

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 142/497 (28%), Positives = 239/497 (48%), Gaps = 26/497 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +Q L       ++  +        E    ++S +S+ I+ G IFVA++GN  DGH +I
Sbjct: 1   MSIQKLFKNVDYRVLTLV-------EEDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P AI  GA+ I+                +  +++V N R  L   +S  Y   P+N L +
Sbjct: 54  PSAIENGAKMIIAERD------DYPYPKDITVVLVKNLRDNLGYISSNFY-NFPQNKLKI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
              +G +   +    +      S+        I     + + TTP  + L K +     +
Sbjct: 107 IAVTGTNGKTTTTYILESIFKNSARIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDK 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V +  +E SSH L Q R+  ++  +  FTNL +DH+D+H+T + YF AK       L  
Sbjct: 167 NVEYFLMEVSSHALCQGRVKMLEFDSAIFTNLTQDHLDFHETLEKYFEAKA-SIINHLKP 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  II  DD Y   ++  + +   + ++            +       +V IS + K +
Sbjct: 226 NARLIINKDDKYCNRLLNVSDSFSLKEVATINGEV------LEYTLKGMKVRISKDDKKY 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   L GE+ + N L A      +GID   ++  ++ ++ + GRFE +  N +   + V
Sbjct: 280 IFTTKLMGEYNLQNLLGAILSAYNLGIDLDEIINSIQNINSIAGRFEII-DNDKDVMVVV 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT++ LE ILK +  +   R++ +FG GGDRD+ KR  M + A   +D+  +T DNP
Sbjct: 339 DYAHTADGLENILKTLSIMKKNRLVTLFGAGGDRDKTKRAKMAQAACKYSDLIFLTSDNP 398

Query: 421 RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R+EDPE I  ++  G+     + +  +R  AI+ +I+ L K D+L++AGKGHE   I+  
Sbjct: 399 RTEDPEMILNDVEKGMNSSIPYFKICDREMAIKNSIQTLQKNDILLIAGKGHEDYQIIGR 458

Query: 478 GEKKMSVDCDIIREILG 494
            EK    D ++ ++ LG
Sbjct: 459 -EKIHFDDREMAKKYLG 474


>gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 485

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 154/471 (32%), Positives = 239/471 (50%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 +++D  R  L   AS  Y + P+  L + G +G +   S    I +  G +   
Sbjct: 73  --KVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129

Query: 147 I-GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             G     I     +   TTP  + L K       + + +V +E SSH L+  R+D +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF + L   + ++   DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLK-LKDINNSVFNIDDKYGKRLYDEFIEDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  + K     F L G+F +YN L A  +   
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKEKVEKVKFALLGDFNLYNTLGAVAIARK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-R 383
           +GI    +LE +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G R
Sbjct: 305 MGISWEDILERVSNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++  G      ++
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKAGFTKTDDYL 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 505

 Score =  299 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 143/500 (28%), Positives = 226/500 (45%), Gaps = 29/500 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L      + +       +   + +I  + S S  +  G +F+ + G   DGH ++ 
Sbjct: 5   KLSQLTQDLLVKRM-------IGNPDTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVN 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           +AI +G  A++        + S       P +VV +TR+ +++ A   YG      N++ 
Sbjct: 58  EAIQRGCAALMAEKKVERLEGS------IPCIVVPDTRRAMAVLADAYYGHPSNAMNLIG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++ I   +G  +  IG  S    S+ +    TTP  + L   L  ++
Sbjct: 112 VTGTNGKTTTTHMIEHIFHHTGHKTGLIGTVSMKLGSYIEKTENTTPESLVLQSMLKRMA 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +   +  +E SSH L   R+ G       FTNL  DH+DYH +   Y   K  LF +L 
Sbjct: 172 DREAKYAVLEVSSHALRMGRVRGCNFKTAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLG 231

Query: 239 PKE----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                    AI+ ADD +SK++  +             Q   +   ++          + 
Sbjct: 232 NSYGSLPKVAILNADDPFSKKLAAKTSAQVIHYGI--DQPSDVRASEIRMNQESTSFWLD 289

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      + G F VYNAL A  + +  GI    + + LE    V GRF+      +
Sbjct: 290 TYLGSTWIHLNVVGIFNVYNALAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQ-AIETGQ 348

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             ++ VDYAH  + LE ++   R IT G+II + GC GDRD+ KRPIM   A  LAD AI
Sbjct: 349 DFQVIVDYAHNPDGLEKVISTARAITKGKIIALIGCEGDRDKAKRPIMAAKAAILADKAI 408

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T DNPRSE  E I  +++ G+            +R +AI  A+E+    D +++ GKGH
Sbjct: 409 LTSDNPRSERSESILEDMVRGLDNAGLSRCETITSRKDAIHRALELAKTGDCVLILGKGH 468

Query: 470 ETVHIVTNGEKKMSVDCDII 489
           ET  I  +  +    D +I 
Sbjct: 469 ETQQIFKD-HQIPFDDAEIA 487


>gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 515

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 137/510 (26%), Positives = 232/510 (45%), Gaps = 22/510 (4%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           Q +       +   L+ F ++  +  +  +  DSR +     F+A+ G+  DG  FIPQA
Sbjct: 5   QHIQLNTTQSIQPLLAKFGIETADIMVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQA 64

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121
           ++ GA+ I+       +    ++R  + I+   +    LS  A+  Y        I+ VT
Sbjct: 65  VSLGAKVIIAECDTQQEHGQTSMREQSLIISFYDLSAQLSALAATFYHFPASEMQIIGVT 124

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTST-------ISSFAQDNRLTTPSPIYLAKAL 174
           GT+GK+S      Q+       +  IG   +         +   +   TTP  I + K +
Sbjct: 125 GTNGKTSTVQLTSQLAALLNKRAASIGTLGSGVISCTGECASFGETINTTPDAITMHKLM 184

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  +   V  V++E SSH L Q R+  +K+     TNL RDH+DYH T QAY  A  R  
Sbjct: 185 AQFAQDNVKQVALEVSSHALVQKRVAALKVDVAVLTNLTRDHLDYHGTMQAYAQA-KREI 243

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-------GYQGKFIHLKKVCAIHN 287
                 +   +   +    + + +  +     V  +       G   K    K+V     
Sbjct: 244 LTQPELKFAVLNGNEIESKQWLAQLPNTVTPVVYGIDDESLLLGNAQKVCLAKEVEYSSQ 303

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             + T+     + +    L G F ++NAL A    + +G     + +  ++L  V GR E
Sbjct: 304 GCRFTLVSSWGECEIQLSLLGRFNIFNALAAIASQLCLGQALTDIADVAQQLVPVAGRME 363

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                     + VDYAHT ++L+  L  +R  + GR+ V+FGCGGDRD+GKR +MG+ A 
Sbjct: 364 RFSDEKSPT-VVVDYAHTPDALKQALLALRQHSEGRLFVIFGCGGDRDKGKRSLMGEAAE 422

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD+ ++T+DN RSEDP  I ++I+ G         + +R  AI  A+     +D+++V
Sbjct: 423 TCADVVMITNDNSRSEDPNAIASDILAGCIQPEKIQVELDRKCAIAKAVADATPKDIILV 482

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AGKGHE   I+ +       + + ++++  
Sbjct: 483 AGKGHEDYQIIGSETVAY-NEREYVKQMFE 511


>gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 492

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 152/499 (30%), Positives = 226/499 (45%), Gaps = 21/499 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDGK---FAWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWGALEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY   K RLF    
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYGAIKSRLFYWHG 231

Query: 239 PKESPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            + +   +     A     +K+             +   I +    A  +  +       
Sbjct: 232 LQHAIINVDDGYGAELAGRLKKDCLDLAVYSYGFSEHADIRITNFTASSDGMEAVFQTPW 291

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +      L G F   N      L  A G     VL  L K+    GR +    NS    
Sbjct: 292 GEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLAVLAKIRPASGRMD-CIMNSGKPL 350

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  +V
Sbjct: 351 VVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVV 410

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           T DNPR E+P+ I  +I+  +P       +R  AIR A+E     D++++AGKGHE    
Sbjct: 411 TSDNPRLENPQDIINDILPAVPNPERVEVDRAVAIRYAVEQAAANDIILIAGKGHENYQD 470

Query: 475 VTNGEKKMSVDCDIIREIL 493
           V  G K    D +   + L
Sbjct: 471 VQ-GVKHHFSDFETAEKAL 488


>gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
 gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
          Length = 503

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 143/487 (29%), Positives = 230/487 (47%), Gaps = 29/487 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +N + +DSR +++G +F+A  G K DG  FI QAI QGA A++        +F     
Sbjct: 14  VPLNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQAILQGAAAVIWD----AHNFVWDKA 69

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P + + + R      A  +YG+  +   ++ VTGT+GK+S   ++ Q    +G    
Sbjct: 70  WTVPNIGISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNGKTSTCHWIAQALGDAGKKCA 129

Query: 146 QIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG          +    TTP  I +   L+   + G    ++E SSH L Q R++G++ 
Sbjct: 130 LIGTLGNGFVNELEASANTTPDAIRVQGLLADFLNSGAQAAAMEVSSHALAQGRVNGVRF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL RDH+DYH   ++Y  A  +         + A+I  DDA+  E+  +  +  
Sbjct: 190 DVALLTNLSRDHLDYHGDMESY--AATKRRLFDWQSLNYAVINLDDAFGAELALQLVDKT 247

Query: 265 CRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V+  G              + ++   +    +  +V +            + G F V 
Sbjct: 248 VEVIGYGTTDEALRLAERHGLRMVYGVVLEMDSHGMKVEVRSSWGAAQLSTQMVGRFNVS 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A G+ +   +     +  L  +  V GR + +G N +   + VDYAHT ++LE +L
Sbjct: 308 NLLGALGVLLVSDVTLDAAVASLNAVQPVTGRMQKLGGNDQPL-VIVDYAHTPDALEKVL 366

Query: 374 KNIRTITSG-----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             +     G     ++I VFGCGGDRD+GKR +MG++A   AD  IVT DNPRSED ++I
Sbjct: 367 LALCEAAQGTKAGGQLICVFGCGGDRDRGKRAMMGRVAEKFADRCIVTSDNPRSEDAQQI 426

Query: 429 RAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
             E+I G+         +R +AI  AI M  + D++++AGKGHE    +  G K    D 
Sbjct: 427 IGEVIAGMNEGRHEVISDRADAIGHAIAMAGRADIVLIAGKGHEDYQEIK-GVKHPFSDV 485

Query: 487 DIIREIL 493
           ++  + L
Sbjct: 486 NVATQAL 492


>gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 511

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 135/503 (26%), Positives = 246/503 (48%), Gaps = 22/503 (4%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
               L++ + I P +   +++IN +S +S+ +Q G +F+ + G   DG  +  +AI  GA
Sbjct: 5   KLHRLLDLVGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           EA ++ SA + Q   +  R    ++  DN         S  + +    +  + VTGT+GK
Sbjct: 65  EAAIIGSA-AKQKIGSIDRERILVIE-DNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++ G  +   G   +    F++    TT     L K L+          
Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +LF     K+   I
Sbjct: 183 ILEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGI 242

Query: 246 IYADDAYSK------EVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
              +           ++ KR+     ++    ++   F ++       +          +
Sbjct: 243 SVLNHDDLWISKLSSDLEKRSSLVSTKITKSEFKNDGFFYVTDKQFTESGSTCIFHTPKE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355
                 PL GEF + NA+ A  +   +      + + ++     PGR E +  ++     
Sbjct: 303 KIKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNNDVSR 362

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + +DYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA + +D  
Sbjct: 363 SLPIVIIDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDRSKRPLMGSIAEEFSDHV 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPRSE+P++I  +I+ GI    +     +R +AI  +I+  NK+D++++AGKGHE
Sbjct: 423 FITSDNPRSEEPQQIVNDILMGIEKREKITFDIDRFKAINESIKFANKEDIVLIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ + +     D  I +++L
Sbjct: 483 DYQILND-KVINFDDRKIAQKLL 504


>gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 492

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLQHAVINVDDEYGAELVGRLKKDCPDLVV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P       
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPNPERVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D ++  + L
Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488


>gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 511

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 138/503 (27%), Positives = 240/503 (47%), Gaps = 22/503 (4%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +L+N + I P +   +++IN +S +S+ +Q G +F+ + G   DG  F  +AI  GA
Sbjct: 5   KLFKLLNLVGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           EA ++ SA + +   +  R    ++  DN         +  + +    +  + VTGT+GK
Sbjct: 65  EAAIIGSA-AKEKIGSFDRERILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++SG  +   G   +    F++    TT     L K L+          
Sbjct: 123 TTITFLLEYLLKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKESP 243
            +E SSH + Q R+ G +     FTNL +DH+DYH   ++YF  K        L+ K+  
Sbjct: 183 ILEVSSHSIAQKRISGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGI 242

Query: 244 AIIYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +++  DD +  ++                 S      F  +       N          +
Sbjct: 243 SVLNHDDPWISKLSSDIEKRSSLVSTKITESEFENDDFFFVTDKKFTENGSTCIFHTPKE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355
                 PL GEF + NA+ A  +   +      + + +      PGR E +  ++     
Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDVAR 362

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD GKRP+MG IA + +D  
Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAEEFSDQL 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE
Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIVLIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ + +     D  I  ++L
Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504


>gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
 gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
          Length = 496

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 161/513 (31%), Positives = 237/513 (46%), Gaps = 36/513 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L          +I           + +I  V+ DSR +  G +F A+ G + DGH F 
Sbjct: 1   MRLS--------TVIAGSGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  +GA A+V             +  +    +      F    A RL       + AV
Sbjct: 53  AEAARRGAVAVVAERPVECAPARLLLAPSARRAMALAAASFHGRPAERL------RMAAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V   V+   + + +    +G  S     A +    TTP    +   L+ + +
Sbjct: 107 TGTNGKTTVTYLVEACARAAAVPVGVLGTISFRFPGADRPASHTTPESTAIQAVLAEMVA 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G     +E SSH L Q R+ GI+  A  FTNL RDH+DYH+   AYF AK RLF E L 
Sbjct: 167 AGARDAVMEVSSHALAQERVAGIRFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLA 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I A D +   +  +              G  +   +V         T       
Sbjct: 227 PGGTAVINARDPWGARLADQLGPGPRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G+  + N L AAGL + +G+    V+  L   H  PGR E    + RG  ++
Sbjct: 287 LAIRSPLVGQHNLENLLCAAGLALGLGLPPDAVVRGLAASHGAPGRLER--IDGRGLSVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++L  ++  +R ++  R+I VFGCGGDRD+GKRP+MG  A   AD+AIVT DN
Sbjct: 345 VDYAHTDDALARMIAALRGLSPRRLICVFGCGGDRDRGKRPLMGAAAAA-ADLAIVTSDN 403

Query: 420 PRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNKQDVL 462
           PR+EDP  I A+++ G+                   ++ + +R  AI  A+E   + D +
Sbjct: 404 PRTEDPLAIIADVLPGLDRAGKPALGAARARTGEDGYLVEPDRRAAIALAVECAREGDAV 463

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +VAGKGHE    V   EK+   D D  R+ LG+
Sbjct: 464 LVAGKGHEDYQQVGA-EKRPFSDRDEARKALGI 495


>gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
 gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
          Length = 499

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 142/502 (28%), Positives = 222/502 (44%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK ++L+      +I           + +I E+ +DSR +    +F  IVG   DGH ++
Sbjct: 1   MKARELLKGLQYSVI-------CGDEDVEIKEIYNDSRKVGEQGLFFCIVGANFDGHAYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              I +GA  +VV                  I+ VD+TR  + + +S  YG     +  +
Sbjct: 54  KNVIDKGAVCLVVQKDVE-------PVPGVLIVKVDSTRYAMGIVSSNFYGNPSSKLTVI 106

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +           G  +  IG       +       TTP  + + K L  +
Sbjct: 107 GITGTKGKTTTTYMIREMLMSAGHKTGLIGTIEIIDGNNVTAANNTTPESMIVHKKLKDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+  V +E SS GL   R+ G+    G F+NL RDHI     +   F        +L
Sbjct: 167 VDNGLDSVVMEVSSQGLMLDRVAGVDFDYGIFSNLSRDHIG--PNEHKTFEEYAMWKSKL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I  ADD +   + + A          G      +   +        +   + G
Sbjct: 225 FTMCKIGIFNADDPHVDTMTEHATCKIVTYGINGDYDYKANNHNLYNKDGHLGIGYHLSG 284

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K D D L  LPG F +YN+L A  +   +G+    + E L+ + V  GR E +  +    
Sbjct: 285 KLDGDVLVNLPGNFSIYNSLAAIAVADLMGVPFDKIQEILKTIKV-KGRVELIPISD-KF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAH + SL  IL+ +R     R++ +FGCGG+R + +R  MG+++ ++AD+ I+T
Sbjct: 343 TIMIDYAHNAVSLMSILETLREYKPKRLVSLFGCGGNRSKERRYEMGEVSGNMADLTIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR E+P+ I  +I  GI      ++E  +R EAIR AI      DV+V+AGKGHE  
Sbjct: 403 SDNPRFEEPQDIINDIKTGINKTTGKYVEIIDRKEAIRYAIMNAEPGDVIVLAGKGHEDY 462

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +  G K    + D+IRE+L 
Sbjct: 463 QEIK-GVKHHMDERDLIREVLE 483


>gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
 gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
          Length = 484

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 161/492 (32%), Positives = 243/492 (49%), Gaps = 21/492 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  K   ELI+     P +     I++++ DSR +  G +FVA+ G + DG  FI  A+ 
Sbjct: 3   LAVKSLAELID----VPAELGSVAISDITLDSRAVAPGAVFVAMPGGESDGRGFIDDALR 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
                    +A  L +     + +  ++ V   R      A R +G     +  +AVTGT
Sbjct: 59  -------AGAAAVLAEADGLAQQHPKVIAVPALRSRCGDIARRGFGDVSARMALVAVTGT 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+S+A    Q+ +  G+ +  IG   +  ++ A     TTP    L + L+   ++ +
Sbjct: 112 NGKTSIADITAQLLRGLGVKTGTIGTLGSRTNTVAATAVNTTPDVFTLHRTLAAWHAEDI 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            HV +EASSH L Q RL G+ L  G FTNL RDH+DYH+ ++AY  AK+RLF +      
Sbjct: 172 DHVVLEASSHALSQERLAGLTLRTGIFTNLSRDHLDYHEDERAYLAAKLRLFSD--YPLQ 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI  ADD  + EV   A      +     +       +V        +T+         
Sbjct: 230 YAIYNADDPMASEVRTVASCPTLGISMSSAEADVFAQFEVLQSGL--NITLHAPYGTASA 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G F  +N + A      +G D   V+  L  L  VPGR + V  + +   + VDY
Sbjct: 288 ETPLSGTFNAFNVVAAVMAATTLGYDFEQVMALLPTLKTVPGRMQRVA-SPQELAVVVDY 346

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT  +L + ++ +R   +G + +VFGCGGDRD+GKR  MG+IA  LAD  +VT DNPRS
Sbjct: 347 AHTPEALAVAIEALRPGCTGELWLVFGCGGDRDRGKRAQMGRIAATLADRVVVTSDNPRS 406

Query: 423 EDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           E PE+I  +I+ GI G  +   +R  AI  A+      DV+++AGKGHE     + G ++
Sbjct: 407 EAPERIIDDILKGIDGPAVVVEDRRGAIMHALGAARPGDVVLIAGKGHEDYQE-SAGVRR 465

Query: 482 MSVDCDIIREIL 493
              D  + +E  
Sbjct: 466 PFSDSAVAQEFF 477


>gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 485

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 150/480 (31%), Positives = 236/480 (49%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  +      +RK + +  DSR I+  +IF+A  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKVLKDVNLDRKYDGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSKK 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   ++V++ R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKH-------NVSYVLVEDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG     I     +   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R++ +      FTNL +DH+DYH T + YF AK +LF + L   + ++I  DD Y K 
Sbjct: 181 IGRVEVVDFDYALFTNLTQDHLDYHITMENYFQAKRKLFLK-LKDINNSVINIDDKYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G  G  +         +   + I  + +     F L G+F +YN 
Sbjct: 240 LYDEFIIDNPEIISYGIDGGDLEGD----YLDDGYIDIKYKNQIEKVKFALLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIVLKIGISMEEILKRVSTIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +G RII +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I  ++  
Sbjct: 355 ARNIKNGNRIITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFDDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +  + +R +AI+ AI +  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINIAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
 gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
          Length = 505

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 140/476 (29%), Positives = 229/476 (48%), Gaps = 19/476 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  + SDSR  Q G +F  + G KE    ++P+AI +GA+AI+             
Sbjct: 30  ADVFVTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPL-------- 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                P  +V + RK  +L  S L G+   +     VTGT+GK++V+  ++ I Q SG  
Sbjct: 82  TGLQVPQCIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRR 141

Query: 144 SFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +   G      S  ++   LTTP    L++ L+ +  +  TH  +E SSH LDQ+RL GI
Sbjct: 142 TGLSGTVEYHDSISSRPASLTTPDANELSQLLAEMVCRKATHAVMEVSSHALDQNRLAGI 201

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            L  G  TN+ +DH DYHQ    Y   K R+ +++ P+ +  + + DD   +       +
Sbjct: 202 DLSVGVITNVTQDHFDYHQNFGNYAACKARMIQQVKPEGTLVLNW-DDPTCRSFAAEVKS 260

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +   +         +  + +       +  I   G        L G   + N L AA  C
Sbjct: 261 SQTLLTYAIDGQADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCLAAAAAC 320

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +++G+  + +   +E+L  VPGR E V        + +DYAHT ++L  ++++ + + S 
Sbjct: 321 LSLGVSLSEIALGIERLVTVPGRMERVTCGQS-FTVLIDYAHTDDALSHVIRSAKRLCSQ 379

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           R+  VFG GGDRD GKR ++G  A + AD  I+T DNPRSEDP +I   +  G       
Sbjct: 380 RVFCVFGAGGDRDTGKRSLLGMAASE-ADRVIITSDNPRSEDPAQIIRAVAEGCLNKGVS 438

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +  +R EAI  A+    + D++++AGKGHE   I+ + +     D  ++     
Sbjct: 439 PEQIIDRREAIHYALSEARRGDLVLIAGKGHENNQIIGD-QIIPFSDRLVVENYFR 493


>gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
 gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
          Length = 474

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 162/474 (34%), Positives = 249/474 (52%), Gaps = 28/474 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + +  +  +S++S+ I+A   F AI     +G+ FI  A+ +GA  ++     +  +   
Sbjct: 9   FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADALEKGAALVITDDKKNTTNK-- 62

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++ V++ ++ L       Y K P+ ++AVTGT+GKSSV S++ QI    G  +
Sbjct: 63  -------VIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKSSVVSYIAQIYSLIGQKA 115

Query: 145 FQIGPTSTISSFAQDNR-----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG          +       LTT   +   K    L+  G+ +++ EASSHGLDQ RL
Sbjct: 116 ASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGIDYLAFEASSHGLDQQRL 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K+    FT+  +DH+DYH T++ Y  AK++LF + L K+  AI+ +D    K +   
Sbjct: 176 GDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDGIAILNSDIEEIKFIKDY 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + L VG  G    + K  +    Q +    + K++DF  P+ G FQ  N L+A 
Sbjct: 236 LDKHKIKYLCVGANGNC-KITKTNSSLKGQNINFIFDNKNYDFDTPIIGSFQASNLLIAG 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                   D + V+  L K+  V GR E V   +    I++DYAHT ++LE  L  ++ I
Sbjct: 295 PSVYYTSFDFSKVINALTKVKAVKGRMERVNRTN----IFIDYAHTPDALEKALTELKNI 350

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               G++ ++FGCGG+RD  KR +MGKIA  +AD  IVTDDNPR EDP+ IR EII GI 
Sbjct: 351 KAKGGKLSIIFGCGGNRDTTKRKLMGKIAASIADNVIVTDDNPRHEDPKAIRQEIISGIV 410

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
              +IE  +R EAI+  I  L K D+L++AGKGHE   I+ + EK    D ++ 
Sbjct: 411 TTNYIEIADRKEAIKYGINNLKKDDILLIAGKGHENYQIIGD-EKIRFDDAEVA 463


>gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcus flavefaciens FD-1]
          Length = 479

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 236/503 (46%), Gaps = 33/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+  +             +    +I  ++ D+R +  G +FV + G   DGH   
Sbjct: 1   MKLYDLLENN----------AETKLGNIEITSITDDTRKVAEGCLFVCVKGGSFDGHTAA 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            + + +GA A+V      L D           ++ DN+R+   +  S  +G   +   ++
Sbjct: 51  AEMLEKGAAAVVCEHDLGLGDR---------QILTDNSRRLYGMMCSAWFGHPEKKLHMI 101

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++ + ++ I  ++G  +  +G   + I         TTP    L   L  +
Sbjct: 102 GVTGTNGKTTITNVIKHILMKNGHKTGLVGTIQNEIGDEIVHTENTTPMAYDLMALLDRM 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SS GL Q+R+         FTNL +DH+DYH+  + Y+ AK  LF+  
Sbjct: 162 VKAGCEYVVMEVSSFGLVQNRIGASWFDTAVFTNLTQDHLDYHKDMEDYYQAKKMLFDIC 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A++  DD Y K +              G         K+ +  +         G
Sbjct: 222 DC----ALVNIDDEYGKRLYGEIGCEKQSFSVKGCADYTADGIKIKSTGS--SFWFCKGG 275

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K       +PG F V N   A  +C+  G+    ++  +E+ + V GR E + T      
Sbjct: 276 KSHLVKCRMPGAFNVSNITAAMAVCLRAGLSVDDIIAAVEEYNGVKGRCEVIPTGR-DFT 334

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +  DYAHT ++LE IL+++R  T  R+I +FGCGG+RD  KRP M   A   AD  IVT 
Sbjct: 335 VICDYAHTPDALENILRSVREYTDNRLICLFGCGGNRDAAKRPKMAAAAAKFADRLIVTS 394

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDPE I  EI+ G+      +    +R EAI  A+++  K D++V+AGKGHE   
Sbjct: 395 DNPRNEDPELIIKEILTGLEDSDIPYDVVVDRREAIYHALKIAEKGDIIVLAGKGHEDYQ 454

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+   E     + +I+ E L L+
Sbjct: 455 ILAGMEHIHFDEREIVAEGLKLL 477


>gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
 gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
          Length = 485

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 149/480 (31%), Positives = 236/480 (49%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  +      +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKE 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   +++D+ R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKH-------NVSYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVE 120

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG     I     +   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R++ +      FTNL +DH+DYH T + YF AK +LF +L    +  I   DD Y K 
Sbjct: 181 IGRVEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVI-NIDDEYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G  G  +  + +   +    + I  + +     F L G+F +YN 
Sbjct: 240 LYDEFIVDNPEIISYGIDGGDLEGEYLDDGY----IDIKYKEQVEKIKFALLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +  R+I +FGCGGDRD+ KRPIM K+A DL+DI I+T DNPR+E PE+I  ++  
Sbjct: 355 ARNIKNVNRVITIFGCGGDRDRTKRPIMAKVAEDLSDIVILTSDNPRTESPEQIFDDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +  + +R +AI+ A+ M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYFFEPDREKAIKVAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
 gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
          Length = 505

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 245/523 (46%), Gaps = 48/523 (9%)

Query: 1   MKLQDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+     PEL              +I  +  DSR +  G +F A+ G K DG  F
Sbjct: 1   MKLAQLLNCLASPELSGDAG--------IEIESLCYDSRKVAPGALFFALRGVKSDGTEF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+  GA AIV     +             ++VV + R  +SL A+  YG       +
Sbjct: 53  VEAAVKGGAVAIVADRPCACP--------GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    V+ I +++G+ +  +G  S            TTP  + L   L  
Sbjct: 105 VGITGTNGKTTTTYLVEGIMEQAGVPAAVLGTISYRFGETNIPAPNTTPESVDLQAILRE 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L   G     +E SSH L+QHR+DG       F+NL RDH+DYH   ++YF +K+RLF +
Sbjct: 165 LVDHGARGAVMEVSSHALEQHRVDGCLFDVALFSNLTRDHLDYHLDMESYFKSKLRLFTD 224

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           LL          A++  DD +   + ++A          G       + +     +  + 
Sbjct: 225 LLAPTAEKPLRRAVVNLDDPFGPRIAEKAAAPVLTYSMTGKADI--SVAEAEFSVDGIRC 282

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++    +      L G F +YN L A G  +A+G     +   +E    VPGR E V  
Sbjct: 283 RLNTPVGEISLASELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERV-E 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  + VDYAHT ++LE +L  +  + + RII +FGCGGDRD+GKRP+MG+IA   +D
Sbjct: 342 TEEGITVLVDYAHTGDALENVLSTVSELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSD 401

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTA 452
           +A++T DNPR+EDP+ I  ++  GI                    GF    +R  AIR A
Sbjct: 402 LAVITSDNPRTEDPQAILEDVRAGILPLGLREYGLEELAAGFHEKGFATIESRRAAIRAA 461

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +   +  D++++AGKGHE   IV   EK    D +     L L
Sbjct: 462 LLAAHPGDIVLLAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503


>gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 492

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 141/497 (28%), Positives = 227/497 (45%), Gaps = 22/497 (4%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +DL   D  + I  ++   ++     +  V++DSR +  G +FVAI G   DGH +  QA
Sbjct: 5   KDLNLTDLVKTIQLINQPNLEG--IVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQA 62

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A+V            ++  + P L+V ++ + + L AS  Y    E +     T
Sbjct: 63  VERGAVAVVSER---------SLDLSVPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGIT 113

Query: 124 SGKSSVASFVQQICQRS--GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
                  +           G S+  IG     I+     ++ TTP    L + L+ +  +
Sbjct: 114 GTNGKTTTTTILRDVLDVLGHSTGLIGTVEVRINDKIVPSKNTTPQSSELQQLLAQMRDE 173

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELL 238
           GVT V +E SSHGL+  R+ G       FTNL  DH+D+H T + Y  AK  +      +
Sbjct: 174 GVTDVMMEVSSHGLELGRVIGTDFDIVGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQM 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                  +   D     + +    A      +  Q   +    +    ++   T++ +G 
Sbjct: 234 ASRGKVAVLNADDAQTPLYETMTGAKVITYGIDAQADLM-ATDIEQTLSQTSFTLNYQGA 292

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                    G F VYN L+A G  +A G     + + LE +H   GR + +  +  G  +
Sbjct: 293 KLPVTVQFIGRFNVYNLLLATGCLLAAGYSLERIAKALEMIHPAKGRMQRL--DVPGYNV 350

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y DYAHT + +E  LK++  +   +II + G GG+RD  KRP MG++A   A   I+T D
Sbjct: 351 YADYAHTPDGIEQCLKSLVGVPKEKIIFLIGTGGNRDVTKRPAMGEMASTYAGTVIITTD 410

Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           +PR E  E I   I  G+    F+E G+R EA+R A  +    +++V+AGKGHE   I+ 
Sbjct: 411 DPRFEAYESITKGIAAGMTHDNFVEIGDREEAVRYAARLAKPDNIIVLAGKGHEKYQIIG 470

Query: 477 NGEKKMSVDCDIIREIL 493
           N EK    +  I+R  +
Sbjct: 471 N-EKLPLDEEAIVRATI 486


>gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured
           Prochlorococcus marinus clone HF10-88F10]
          Length = 511

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 136/503 (27%), Positives = 237/503 (47%), Gaps = 22/503 (4%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  F  +AI  GA
Sbjct: 5   KLHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           EA ++ SA + +  ++  R    ++  DN         +  + +    I  + VTGT+GK
Sbjct: 65  EAAIIGSA-AKERIASIDRERILVIE-DNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++ G  +   G   +    F++    TT     L K L+          
Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPA 244
            +E SSH + Q R+ G +  A  FTN  +DH+DYH   ++YF  K +  F   L ++   
Sbjct: 183 ILEVSSHSIAQKRISGCEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGI 242

Query: 245 IIYADDAYSKEVMKRAHNAG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   D +    +                 S      F  +       +          +
Sbjct: 243 CVLNHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355
                 PL GEF + NA+ A  +   +      + + ++     PGR E +  +      
Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDNDVSR 362

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +L+D  
Sbjct: 363 SLPTIIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQL 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE
Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKRENITIEIDRFKAINESIKFANKKDIVLIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ + +     D  I  ++L
Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504


>gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
 gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
 gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2]
 gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
          Length = 499

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 152/490 (31%), Positives = 236/490 (48%), Gaps = 34/490 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              QW ++  +  S DSR ++ G IF+A+       K     F   A+A GA A++  + 
Sbjct: 13  IDAQWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA
Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDA 238

Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ++  ++K A N   +      S+       ++  +          +  +   F    PL 
Sbjct: 239 HADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLL 298

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT +
Sbjct: 299 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 356

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+
Sbjct: 357 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I A++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +   
Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 475

Query: 484 VDCDIIREIL 493
            D   +R  +
Sbjct: 476 DDVVEVRSAI 485


>gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 511

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 132/503 (26%), Positives = 236/503 (46%), Gaps = 22/503 (4%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  +  +AI  GA
Sbjct: 5   KLHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           EA ++ SA + +   +  R    ++  DN         +  + +    +  + VTGT+GK
Sbjct: 65  EAAIIGSA-AKEKIGSIDRERILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++ G  +   G   +    F++    TT     L K L+          
Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPA 244
            +E SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF  K +  F   L ++   
Sbjct: 183 ILEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGI 242

Query: 245 IIYADDAYSKEVMKRAHNAG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   D +    +                 S      F  +                  +
Sbjct: 243 CVLNHDDHWISKLSSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPRE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355
                 PL GEF + NA+ A  +   +      + + ++     PGR E +  ++     
Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDNNDVSR 362

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA + +D  
Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEEFSDQL 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+   K+D++++AGKGHE
Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFAKKKDIVLIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ + +     D  I  ++L
Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504


>gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 508

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 133/503 (26%), Positives = 221/503 (43%), Gaps = 28/503 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
               + + +  I      +  +  +S+D+R ++ G IFVA+ G   DG  FIP AI +GA
Sbjct: 8   NKLVKALPKAHIVGNYSDDTVVTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKGA 67

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN------ILAVTG 122
           +A+VV         S       P+++VDN R   S  A+  +                  
Sbjct: 68  KAVVVE-------GSYQPDLQVPVIIVDNARLAFSRLAAEFWDNPSHKLKVIGVTGTNGK 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+    ++S ++     +G  +      +      +++  TTP P  L + L  +   GV
Sbjct: 121 TTTTYMISSMLESADASTGFITTVDYKIANHQWKHEEHS-TTPQPDRLHELLYRMLQAGV 179

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----ELL 238
            +  +E+SSHGL  HRL+ +      FTN+  +H++ H T + Y   K RLF+       
Sbjct: 180 EYAVIESSSHGLKLHRLEDVAYDVAVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPD 239

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                  +   D  + ++   +        S   +   +    +          +  +G 
Sbjct: 240 KGCGKWGVINLDDPNAQLYIDSTKGKVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGN 299

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +   P+ G++ VYNAL A G+ I   I   +    LE+   VPGR + +        +
Sbjct: 300 STEINLPISGDYNVYNALAAIGVAITQNIPIDVCKSALERFTGVPGRMQVISMGQ-PFTV 358

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DYAHT +SLE +L  ++  T GR+  VFG  G+RD  KR  MGK+A   AD  I+T++
Sbjct: 359 VIDYAHTEDSLEKVLITLKQRTRGRLFAVFGSAGERDPYKRAPMGKVAAKYADFMILTNE 418

Query: 419 NPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +PR ED  +I  +I  G           +I   +R  AI  A+   +  D +++AGKGHE
Sbjct: 419 DPRGEDEMQILLDIAEGARSVGAIEGRDYICIPDRKAAIYEALSRASSGDTVLLAGKGHE 478

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T     NG      + +I ++ L
Sbjct: 479 TTIETKNGFIPW-DEAEIAKQAL 500


>gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
 gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
          Length = 492

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 229/501 (45%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+     N P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDGK---FTWNPEWNVPNQGIKDLKHRAGMLAAQVYGNVSDSLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGTLEETTHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY    ++      
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRDHLDYHGTMEAYG--AIKSRLFYW 229

Query: 239 PKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E+   +K+             +   I +    A  +  +     
Sbjct: 230 HGLQHAIINVDDEYGAELAGRLKKDCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VLE L K+    GR +    NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMD-CIMNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDCGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +        +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVSNPERVEVDRAVAIRYAVEQAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G K    D +I  + L
Sbjct: 469 QDVQ-GVKHHFSDFEIAEKAL 488


>gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 496

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 161/513 (31%), Positives = 236/513 (46%), Gaps = 36/513 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L          +I           + +I  V+ DSR +  G +F A+ G + DGH F 
Sbjct: 1   MRLS--------TVIAGSGARGDLAGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  +GA A+V             +  +    +      F    A RL       + AV
Sbjct: 53  AEAARRGAIAVVAERPVECAPARLLLAPSARRAMALAAASFHGRPAERL------RMAAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V   V+   + + +    +G  S     A +    TTP    +   L+ + +
Sbjct: 107 TGTNGKTTVTYLVEACARAAAVPVGVLGTISFRFPGADRPASHTTPESTAIQAVLAEMVA 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G     +E SSH L Q R+ GI+  A  FTNL RDH+DYH+   AYF AK RLF E L 
Sbjct: 167 AGARDAVMEVSSHALAQERVAGIRFQAAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLA 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I A D +   +  +              G  +   +V         T       
Sbjct: 227 PGGTAVINARDPWGARLADQLGPGPRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G+  + N L AAGL + +G+    V   L   H  PGR E    + RG  ++
Sbjct: 287 IAIRSPLVGQHNLENLLCAAGLALGLGLPPEAVARGLAASHGAPGRLER--IDGRGLSVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT ++L  ++  +R ++  R+I VFGCGGDRD+GKRP+MG  A   AD+AIVT DN
Sbjct: 345 VDYAHTDDALARMIAALRGLSPRRLICVFGCGGDRDRGKRPLMGAAAAA-ADLAIVTSDN 403

Query: 420 PRSEDPEKIRAEIIHGIPG-----------------FIEKGNRIEAIRTAIEMLNKQDVL 462
           PR+EDP  I A+++ G+                   ++ + +R  AI  A+E   + D +
Sbjct: 404 PRTEDPLAIIADVLPGLDRAGKPSLGAARARAGEDGYLVEPDRRAAIALAVECAREGDAV 463

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +VAGKGHE    V   EK+   D D  R+ LG+
Sbjct: 464 LVAGKGHEDYQQVGA-EKRPFSDRDEARKALGI 495


>gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
 gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
          Length = 492

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 152/494 (30%), Positives = 239/494 (48%), Gaps = 25/494 (5%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL++QL+   +Q      + V+ DSR +Q G +F+A  G+  DG  +I  A+A+GA A+
Sbjct: 5   RELLDQLAAMGIQP-----SGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALARGAVAV 59

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +   +      S    +N P   V   R      A  +YG   E  +++A+TGT+GK+++
Sbjct: 60  LWQPSADFSWDSTLATANLP---VAALRPLAGPLAHAVYGHPSEGLSLIAITGTNGKTTI 116

Query: 130 ASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  +    Q        IG           +   TTP    L + L+   ++     ++E
Sbjct: 117 SQCIA---QAYPKPCAIIGTLGAGFPDSLIETGFTTPEATTLMRYLADFRARNAAACALE 173

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASS G+++ R++G ++    FTN  RDH+DYH T +AY  A+ +      P+   AII  
Sbjct: 174 ASSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAY--AEAKEKLFHWPRLRTAIINL 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLF 304
           DD +   +M+          ++G   +        + +      Q+  + +         
Sbjct: 232 DDEFGLNLMRETTAMRVLGYAIGEARRDFPALVRAENLVDTPFGQRFNLVLPNGRVAVDT 291

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G + + N L  A +    G+ +A V   L +L   PGR E +G N     + VDYAH
Sbjct: 292 TLVGRYNISNLLAVAAVLHDAGLAAADVAIRLSELTPPPGRMERLGGNGEPL-VVVDYAH 350

Query: 365 TSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           T ++LE  L  +R +    +GR+ VVFGCGGDRD+GKRP MG +A  LAD  +VT+DNPR
Sbjct: 351 TPDALENALTALRDVATTRAGRLSVVFGCGGDRDKGKRPQMGALAERLADRVLVTNDNPR 410

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           SE P  I  EI  G+     + +R  AIR A+     QDV+++AGKGHE    + +  + 
Sbjct: 411 SEAPHVIINEITSGMTRAEVEADRATAIRRAVLEAGDQDVILLAGKGHEPYQDMGS-VRL 469

Query: 482 MSVDCDIIREILGL 495
              D +     L L
Sbjct: 470 PFSDVEQAGAALAL 483


>gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
 gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
          Length = 494

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 167/494 (33%), Positives = 253/494 (51%), Gaps = 18/494 (3%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              EL   +    +   +  ++ ++  S  + AG  F  IVG   DGH F   AI  GA 
Sbjct: 4   TCRELFEGIDCTFLGNADEPVSGIAYRSDAVTAGDAFFCIVGTNVDGHSFAQDAIDHGAR 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            IV      L D      ++   ++V +TR+ ++  A+  YG      +++ +TGT+GK+
Sbjct: 64  VIVAQRKVYLAD-----ATDVVEIIVSDTRRAMAAAAANFYGHPSTDFHLVGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    V+ I + +G ++  IG      +   +    TTP  + L    + +   G   V+
Sbjct: 119 TTTYLVEHIAEVAGRTTGVIGTVGNRIAGRLEHAERTTPESVDLQHLFARMRDAGCDTVA 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LD  R  G      +F+NL +DH+DYH+T +AYF AK  LF    P       
Sbjct: 179 MEVSSHALDLERTWGTHFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPARRVI-- 236

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD + +E+++R   AG R+LSVG+     IH   V        V + V G+++   +P
Sbjct: 237 CIDDKWGQELLRRCAAAGDRILSVGFDPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYP 296

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-GRIYVDYAH 364
           L G F V N ++A G+ + +GI   +VL  L +   VPGR + +     G   ++VDYAH
Sbjct: 297 LVGRFNVSNVMLALGIGLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVDYAH 356

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++L   +  +  +T GR+IVVFGCGGDRD  KRP+MG+ AL   D A+VT DNPRSED
Sbjct: 357 TPDALRKAISAVANLTDGRVIVVFGCGGDRDATKRPLMGQAALS-GDFAVVTSDNPRSED 415

Query: 425 PEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P+ I ++I+ G+      F    +R EAI  AI + N  D ++VAGKGHE   I+   E 
Sbjct: 416 PDAIISDILEGMESASERFEVHPDRREAIARAIALANTGDAILVAGKGHEDYQILAT-ET 474

Query: 481 KMSVDCDIIREILG 494
               D ++  E L 
Sbjct: 475 IHFSDAEVAGEELE 488


>gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
 gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
          Length = 491

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 219/473 (46%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++              
Sbjct: 15  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDGLPVPAD 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+  +   ++ VTGT+GK+S    + Q     G  +
Sbjct: 75  A-----IAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 129

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 130 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +      +          
Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFAALDPALR 249

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S  +    +  + +   HN     ++++G+      PL G F V N L  AG   
Sbjct: 250 AIGVSSRAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLGRFNVDNLLAVAGALW 309

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+    A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 310 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G       I
Sbjct: 370 LICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 429

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    +  G +    D  +  + L
Sbjct: 430 VQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEIA-GVRHAFDDALVAAQAL 481


>gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
 gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
          Length = 480

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 250/482 (51%), Gaps = 23/482 (4%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
                +++ K+  +S +S+ ++   +F  + G   D + FI  A+ Q    ++  +  S 
Sbjct: 4   NLKQLFKQYKVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQAVALVITDNKKSA 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                       I+ V++ +  L       Y K P+N++AVTGT+GKSSV S++ Q    
Sbjct: 64  TIDK--------IIYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSL 115

Query: 140 SGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            G  +  IG          +       LTT   +   K    L+   + +++ EASSHGL
Sbjct: 116 LGKKAASIGTIGVEIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGL 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q RL  IK+    FT+  +DH+DYH T++ Y  AK++LF E L +   AI+ +D    +
Sbjct: 176 NQARLGEIKVNIACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIEEIE 235

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +     N   + ++VG +G    + K+      Q ++ +   ++  F   + G FQ  N
Sbjct: 236 FIKDYLLNHNIKFITVGKKGDV-QITKINGSLKGQNISFAFNNRECSFNTSIIGSFQASN 294

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L+AA     IG D   ++E L ++  V GR E          I+VDY+HT ++LE  L 
Sbjct: 295 LLIAALSIHYIGCDFNKIVEILTQVKPVKGRMER----IDNTNIFVDYSHTPDALEKALT 350

Query: 375 NIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            ++ I     ++IVVFGCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEI
Sbjct: 351 ELKNIKLRDSKLIVVFGCGGNRDKTKRSLMGQIAAKLADTVIITDDNPRHEDPKLIRAEI 410

Query: 433 IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           I  I    ++E  NR EAI+  I  L + D+L++AGKGHE   I+ + +K    D +I+ 
Sbjct: 411 ISCIEKADYMEIANREEAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEIVG 469

Query: 491 EI 492
           ++
Sbjct: 470 KL 471


>gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
 gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
          Length = 485

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 156/471 (33%), Positives = 240/471 (50%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 +++D  R  L   AS  Y + P+  L + G +G +   S    I +  G +   
Sbjct: 73  --KVSYVLIDEIRHKLGYIASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129

Query: 147 I-GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             G     I     +   TTP  + L K       + + +V +E SSH L+  R+D +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF + L   + ++   DD Y K +        
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLK-LKDINNSVFNIDDKYGKRLYDEFIEDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  +GK     F L G+F +YN L A  + I 
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKGKVEKVKFALLGDFNLYNTLGAVAIAIK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-R 383
           +GI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G R
Sbjct: 305 MGISWEDILKRVSNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II +FGCGGDRD+ KRPIM K A DL+DI I+T DNPR+E PE+I A++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKIGFTKNDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 491

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 219/473 (46%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++              
Sbjct: 15  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDGLPVPAD 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+  +   ++ VTGT+GK+S    + Q     G  +
Sbjct: 75  A-----IAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 129

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 130 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +      +          
Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFAALDPALR 249

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S  +    +  + +   HN     ++V+G+      PL G F V N L  AG   
Sbjct: 250 AIGVSSRAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGRFNVDNLLAVAGALW 309

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+    A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 310 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G       I
Sbjct: 370 LICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 429

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    +  G +    D  +  + L
Sbjct: 430 VQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEIA-GVRHAFDDALVAAQAL 481


>gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
 gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
          Length = 497

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 156/469 (33%), Positives = 234/469 (49%), Gaps = 13/469 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V +DSR +  G +F+A  G   DG  FIP A+A GA  ++   A     F+     N 
Sbjct: 24  KRVETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPA---DGFNWNPAWNV 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P L V   R    + AS  YG+      ++ +TGT+GK+S++ ++ Q        +  IG
Sbjct: 81  PNLAVPQLRARAGIVASHAYGEPSRAMTVIGITGTNGKTSISHWLAQAFSLLAHKAALIG 140

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                      +   TTP P+ + + L+    QG   V++E SSHGLDQ R++G+     
Sbjct: 141 TVGNGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFATA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH + + Y  +K RLF     +   AII ADDA+ +E+         + 
Sbjct: 201 VFTNLTRDHLDYHGSMEEYGASKARLFHWEGLRH--AIINADDAFGRELAAGIDRQRTQT 258

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G +   +  + + A  +  Q+T++    + +   PL G F   N L         G+
Sbjct: 259 VTYGLEQGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLLGRFNAANLLACLATLCVNGV 318

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRII 385
                   L ++    GR + +G       + +DYAHT ++LE  L  +  I     R+ 
Sbjct: 319 ALKDAAAVLSRIQPARGRMQRLGGGHEPL-VVIDYAHTPDALEKALATLAEIRPAGNRLY 377

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGN 444
            VFGCGGDRD+GKRP+MG IA  +AD+A+VT DNPRSE+P+ I A+I  G+      + +
Sbjct: 378 CVFGCGGDRDKGKRPMMGAIATRIADVAVVTSDNPRSEEPQAIIADIRAGMGETGHVEAD 437

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R  AIR AI      D+++VAGKGHE    +  G K+   D  I  E L
Sbjct: 438 RAAAIRWAIAAARAGDIVLVAGKGHEEYQDI-RGVKQPFSDFRIAEEAL 485


>gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           ST-640]
 gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           020-06]
          Length = 492

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     + +   +     A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLQHAVINVDDGYGAELIGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +           +      L G F   N      L  A G  
Sbjct: 263 YGFSEQADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NR 445
           VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P       +R
Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D ++  + L
Sbjct: 442 AAAIRYAVERAAANDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488


>gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
 gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
          Length = 492

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  I          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFIFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALKETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     + +   I     A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWQGLQHAVINIDDGYGAELVCRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +           +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRIADFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--IV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I         
Sbjct: 323 LDKVLDVLGKICPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGTALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD+GKRP+MG  A++ AD  ++T DNPR E+P+ I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVEGADKVVITSDNPRLENPQDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I  + L
Sbjct: 442 AAAIRYAVERAAANDIILIAGKGHENYQDVQ-GVKHHFSDFEIAEKAL 488


>gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
          Length = 477

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 231/470 (49%), Gaps = 10/470 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            +++ +S+ ++ G IF+AIVG + DG  +I +AI   A A++  SA    ++S     N 
Sbjct: 13  KDLTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESA----NYSKNKAWNV 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   ++N  + ++  A   +    +   ++ VTGT+GK+SV  ++QQ       S+  IG
Sbjct: 69  PSFGIENLNQKIAEIAELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIG 128

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              +     +    TTP  I L + L+    +G+ + ++E SSH + Q+R+  I      
Sbjct: 129 TLGSGEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFDIKV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+ RDH+DYH+T   Y     + F      ++  +   D    + +M+   +      
Sbjct: 189 LTNVTRDHLDYHKTLANYQK-IKKQFFSDGECKNFILNIDDCIGQELLMEVDWSEKNLTT 247

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                   +  + +     K    +  + K ++    + G   VYN L   G  +     
Sbjct: 248 YAIDVQADLIAQNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQFS 307

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV-DYAHTSNSLEMILKNIRTITSGRIIVV 387
              +++ +E L  +PGR E +  +  G    V DYAHT ++L+ +L+++R I+   II++
Sbjct: 308 IDQIIKAIELLKSIPGRNEIIQVSKEGWPRVVLDYAHTPDALKNVLQSLRAISDNEIILL 367

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRI 446
           FGCGG+RD+GKR  M  +A + AD  IVT DNPR EDP +I  +I   I    +   +R 
Sbjct: 368 FGCGGNRDKGKRRKMALVANEYADKVIVTTDNPRYEDPLEIIKDITKNITTSHVVIESRE 427

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +AI+ AI M+ +  +L++AGKGHE    +  G K    D DI    LG I
Sbjct: 428 QAIKKAIGMMEENSILLIAGKGHEQHQEIK-GIKHPFSDKDIALLELGGI 476


>gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
          Length = 497

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 153/500 (30%), Positives = 240/500 (48%), Gaps = 25/500 (5%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            ++  ++I QL  ++      +R +++++ DSR    G +F+ I G   DGH ++ +A A
Sbjct: 2   ERNLQDVIRQLPGAVVTGNGADRTVSDLTIDSRTAGPGSLFICIKGVNTDGHKYVAKAAA 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
           QGA A +      + D          ++ V +T++ +   A   Y      +  + VTGT
Sbjct: 62  QGAVAALTEQETEVPD-------GMTVIRVPSTQEAVKTLAPWFYDWPARKMRMIGVTGT 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++  + ++ +  R+G     IG  + +     + +  TTP  + L K L  +     
Sbjct: 115 NGKTTTTNILRTLLTRTGHKVGLIGTINVMIGDEVRTSHNTTPDVVDLQKMLYEMVENHC 174

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLP 239
               +E SSH L   R+ GI+      TN+ +DH+D+H+T + Y  AK        E   
Sbjct: 175 DTCVMEVSSHALALDRVAGIEYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+  +DD  S  +M R                +     V A H +    +     +
Sbjct: 235 PNKTAVFNSDDPSSAIIMPRVKTKIMTYGKGKDNDVYPLTFHVAASHMELN--LQTPVGE 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D    + GEF VYN + +    IA G+    ++  L+    VPGRF+ +        + 
Sbjct: 293 MDLKLHITGEFNVYNVMGSICAAIAEGLTREDIIRGLDDFAGVPGRFQLIHAGQ-PFTVV 351

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE +LK  R IT G++ VVFG GGDRD+ KRPIMGKIALDLADIA+VT DN
Sbjct: 352 VDYAHTPDGLENVLKTARQITKGKLWVVFGAGGDRDRKKRPIMGKIALDLADIAVVTSDN 411

Query: 420 PRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PRSEDPE I  +I  G+          +  +R EAI   +      DV+++AGKGHE   
Sbjct: 412 PRSEDPEAIIRDIEEGLKDNPEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKGHENYQ 471

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+ +       D +++R+  
Sbjct: 472 ILKD-RTIHFDDGEVVRDFF 490


>gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
 gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
          Length = 485

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 234/480 (48%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  I      +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKILKDVNLDRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKE 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   ++++  R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKH-------NVSYVLIEEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120

Query: 137 CQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG           D   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPVTRIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+D I      FTNL +DH+DYH T + YF AK +LF +L  K    I   DD Y K 
Sbjct: 181 LGRVDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVI-NIDDNYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G  G  +  +      +   + I  + +     F L G+F +YN 
Sbjct: 240 LYDEFIVDNPEIISYGIDGGDLEGE----YLDDGYIDIKYKEQVEKVKFALLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  
Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +I + +R +AI+ A+ M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|85058422|ref|YP_454124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
 gi|123520084|sp|Q2NVV6|MURE_SODGM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|84778942|dbj|BAE73719.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
          Length = 495

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 164/505 (32%), Positives = 238/505 (47%), Gaps = 25/505 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L++L+    P               R + E++ DSR   AG +FVA+ G++ DG  +IP
Sbjct: 5   NLRELLAPWVP-----------NAPGRVLREMTLDSRTAAAGDLFVAVAGHQTDGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILA 119
           QAIAQG  A+V  +    ++         P++ +   ++ LS  A R Y +  H   +  
Sbjct: 54  QAIAQGVAAVVAQAEGEAEEGEIRELHGVPVIYLHRLQERLSALAGRFYQQPLHALRLTG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT SPI + + L  L 
Sbjct: 114 VTGTNGKTTTTHLLAQWAQLLGETSAVMGTVGNGVLGHIHPADNTTGSPIEVQQLLLQLQ 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGL QHR+  +   A  FTNL RDH+DYH     Y  AK RLF EL 
Sbjct: 174 RQGATFAAMEVSSHGLVQHRVSILHFAAAVFTNLSRDHLDYHGDMAQYEAAKWRLFGELD 233

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +      ADDA  +  +++   A    +        QG ++   +V        +   
Sbjct: 234 VGQRIIN--ADDATGRRWLQKLPQAIAVAVSGTLPPERQGDWLCAGEVRYHARGADIPFR 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +      L GEF V N L+A    +A+G     +L+   +L  + GR E      R
Sbjct: 292 SSWGEGIVHCQLIGEFNVSNLLLALTTLLALGYPLPALLDSASRLQSICGRMEVFHAEDR 351

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L   R    G++  VFGCGGDRD+GKRP+MG IA   AD  I
Sbjct: 352 PT-VLVDYAHTPDALEKALTAARLHCHGKLWCVFGCGGDRDKGKRPLMGAIAEQYADRVI 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +TDDNPR E  + I  +I  G+           R EA+ +AI      D+++VAGKGHE 
Sbjct: 411 ITDDNPRGEAAQDIINDIKSGLLDAGRAQVISGRAEAVTSAIMQAAPADLVLVAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
             I+         D   +  +LG++
Sbjct: 471 YQIIGKQRLDY-SDRTTVARLLGVM 494


>gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 493

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 193/497 (38%), Positives = 265/497 (53%), Gaps = 11/497 (2%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DLI                      I  +++DSR +  GW+F A+ G K DG  FI
Sbjct: 1   MYLDDLIGAVPARAALGGHPGLGGHPGLAIAGLTADSRAVAPGWLFAALPGVKADGRAFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENIL 118
           P        A+   ++  L      +  + P  +V   N R+  +  A+   G  P  ++
Sbjct: 61  P-------AALAAGASAVLAPEGTALPPDAPAALVTAANPRQAFARMAAAFAGAQPATVV 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK+S  SF +QI  R G ++  +G        + +   +TTP P+ L K L+ +
Sbjct: 114 AVTGTNGKTSSVSFTRQIWDRLGRTAASLGTLGAESGVYRRAGSMTTPDPVSLHKMLAEM 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GV  +++EASSHGLDQ+RLDG++L A +FTNL RDH+DYH T  AY  AK RLF E+
Sbjct: 174 TEAGVDALAMEASSHGLDQYRLDGVRLSAAAFTNLTRDHLDYHHTMDAYLAAKARLFGEV 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L +E  A++ ADD     +     + G  VL  G   K + L  V A  + Q + + + G
Sbjct: 234 LGREGVAVLNADDPAFPTLAALCRDRGQSVLDYGRSAKTLRLAGVSAKAHGQSLDLELFG 293

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +    L PL G+FQ  N L A GL IA G      +  L  L  VPGR E V   + G  
Sbjct: 294 RHHSVLLPLVGDFQAMNVLCALGLAIATGAPVDAAVATLASLEGVPGRLEMVARRASGAP 353

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +YVDYAHT + L   L+ +R    G+++ VFGCGGDRD+ KRP+MG+   + AD+AI+TD
Sbjct: 354 VYVDYAHTPDGLVTALRALRPHCRGKLVCVFGCGGDRDRAKRPLMGRAVAEGADVAILTD 413

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DNPRSEDP  IRAE   G P  IE   R  AIR  + +L   D+LV+AGKGHET   +  
Sbjct: 414 DNPRSEDPAAIRAEARVGCPDAIEIDGRDAAIRAGVALLGPNDLLVIAGKGHETGQTIGT 473

Query: 478 GEKKMSVDCDIIREILG 494
                 VD D  R  +G
Sbjct: 474 -VVHPFVDADHARAAVG 489


>gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
          Length = 485

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 154/480 (32%), Positives = 234/480 (48%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  I      +RK N +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKILKDVNLDRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKE 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   ++++  R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKH-------NVSYVLIEEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIE 120

Query: 137 CQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG           D   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPVTRIGTIEYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R+D I      FTNL +DH+DYH T + YF AK +LF +L  K    I   DD Y K 
Sbjct: 181 LGRVDVIDFDCALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVI-NIDDNYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G  G  +  +      +   + I  + +     F L G+F +YN 
Sbjct: 240 LYDEFIVDNPEIISYGIDGGDLEGE----YLDDGYIDIKYKEQVEKVKFALLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIALKIGISMEEILKRVSNIKAAPGRFEALDCG-QDYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  
Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +I + +R +AI+ A+ M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYIFEPDREKAIKAAVNMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 490

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 146/502 (29%), Positives = 233/502 (46%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++          +E +I E+++DSR +  G +FV I G   DGH +I
Sbjct: 1   MKLTALLERLQYEVVQGT-------KEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +   +GA A++V               +  ++ V++TR  L+L ++  +G   E   ++
Sbjct: 54  EEVGKKGAAAVIVEKDVEA-------PKHMTVIRVEDTRYALALASAAYFGYPAEQLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I +  G     IG   + I         TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILEEVGHKVGLIGTIEAIIGDEVIPAVNTTPESFTIHQYFRKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  GI    G FTNLG DHI      +       +  + L
Sbjct: 167 VDAGCDAVVMEVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGP---NEHKDFEDYKRCKGL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
           L ++    I   D    + + R             +   +  H + V             
Sbjct: 224 LFRQCKIGIANVDDPYFKDVFREATCEIETFGFSEKADLRAEHAELVTRPGYLGVAYHVA 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PG F VYN+L A  +C    + S  + + L+ +  V GR E V  +   
Sbjct: 284 GLMDFDVEIDIPGTFSVYNSLTAIAVCRHFNVPSEKIQKALK-VAKVKGRIEMVKVSDE- 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSKTRRYEMGEVSGRLADLTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P++I  +I  G+      ++E  +R EAIR AI      DV+V+AGKGHE 
Sbjct: 402 TSDNPRFEEPQEIIDDIKIGMKKTDGAYVEICDRKEAIRYAIVNGQPGDVIVLAGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    + D+I +IL
Sbjct: 462 YQEIK-GVKYAMDERDLIADIL 482


>gi|33598266|ref|NP_885909.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella parapertussis 12822]
 gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella parapertussis]
          Length = 945

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 239/480 (49%), Gaps = 26/480 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +  +         +   
Sbjct: 31  DLRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V   R  L   A   YG+  ++  ++A+TGT+GK+S   ++ Q+  R G     IG 
Sbjct: 86  ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145

Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +    Q     LTTP  + + + L+ + + G   V++EASS G++Q RLD I++   
Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    
Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQW--PDLQAAVVNADDPAGERLLASLPAALKTG 263

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+      +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    +G 
Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGW 323

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKNIRTI 379
               +   L  +  V GR + V            +G  + VDYAHT ++L   L  +R +
Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383

Query: 380 TS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+ GI
Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P       + +R  AI   +      DV+++AGKGHET   +  G K    D    R  L
Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDIG-GRKLPFDDRQWARLAL 502



 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 137/386 (35%), Gaps = 22/386 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV+   +            P 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVA--------LPQ 561

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV+ +T   L    +         ++AVTG++GK++    +  I  +      ++     
Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGN 621

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++           P+ L +  +           +  +  G  +             TN 
Sbjct: 622 FNNEI-------GVPLTLLRLRARHR---AAVFELGMNHPGEIERLAAMAAPTVALVTNA 671

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++  T +A   A           E    +Y  D     +  +   A   +     
Sbjct: 672 QREHQEFMHTVEAV--AHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQ 729

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G  ++ ++V    +  Q  +       +   P+PG   + NAL A    +A G      
Sbjct: 730 PGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTC 789

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
           +  L     V GR +    +     I   Y    +S    +  +  + + R +V+   G 
Sbjct: 790 IAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGE 849

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416
            GD        +G  A +    A++T
Sbjct: 850 VGDNGPAMHREVGDYAREHGIDALIT 875


>gi|33603177|ref|NP_890737.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella bronchiseptica RB50]
 gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella bronchiseptica RB50]
          Length = 945

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 239/480 (49%), Gaps = 26/480 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +  +         +   
Sbjct: 31  DLRLDSREIEPGDVFVACPGLASDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V   R  L   A   YG+  ++  ++A+TGT+GK+S   ++ Q+  R G     IG 
Sbjct: 86  ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145

Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +    Q     LTTP  + + + L+ + + G   V++EASS G++Q RLD I++   
Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    
Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQW--PDLQAAVVNADDPAGERLLASLPAALKTG 263

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+      +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    +G 
Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLGQHNISNLLLVAGALSKLGW 323

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKNIRTI 379
               +   L  +  V GR + V            +G  + VDYAHT ++L   L  +R +
Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383

Query: 380 TS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+ GI
Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P       + +R  AI   +      DV+++AGKGHET   +  G K    D    R  L
Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDIG-GRKLPFDDRQWARLAL 502



 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 137/386 (35%), Gaps = 22/386 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV+   +            P 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVA--------LPQ 561

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV+ +T   L    +         ++AVTG++GK++    +  I  +      ++     
Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGN 621

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++           P+ L +  +           +  +  G  +             TN 
Sbjct: 622 FNNEI-------GVPLTLLRLRARHR---AAVFELGMNHPGEIERLAAMAAPTVALVTNA 671

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++  T +A   A           E    +Y  D     +  +   A   +     
Sbjct: 672 QREHQEFMHTVEAV--AHENGAVISALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQ 729

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G  ++ ++V    +  Q  +       +   P+PG   + NAL A    +A G      
Sbjct: 730 PGLDVYAERVVTQAHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTC 789

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
           +  L     V GR +    +     I   Y    +S    +  +  + + R +V+   G 
Sbjct: 790 IAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGE 849

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416
            GD        +G  A +    A++T
Sbjct: 850 VGDNGPAMHREVGDYAREHGIDALIT 875


>gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
 gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
          Length = 536

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 164/527 (31%), Positives = 243/527 (46%), Gaps = 53/527 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+       ++            +I  ++ DSR I    +F A+ G   DGH FI
Sbjct: 24  MKLTQLLAALDSHDLHGDGA-------VEIKALTCDSRGIVPDSLFFALRGAAMDGHDFI 76

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P        A+   +   + +  +   +  P + V + R  ++  A+  +G     +  +
Sbjct: 77  P-------AAVQAGAVAVVLEDESRAPAAIPWVRVRDGRSAMAWMAAEFHGNPTSRLPLI 129

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I + +G+ +  +G  S            TTP    L  A + L
Sbjct: 130 GITGTNGKTTTTYLIEAILRAAGIPAAVLGTISYRFGDTVITASHTTPESTELQAAFTQL 189

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++ G     +E SSH L+Q R+DG     G F+NL RDH+DYH T ++Y  AK+RLF EL
Sbjct: 190 AAAGAKAFVMEVSSHALEQKRVDGCHFDVGIFSNLTRDHLDYHVTMESYREAKLRLFSEL 249

Query: 238 LPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L          A I  DD     V  RA    C V+  G     +  +++    +  +  
Sbjct: 250 LKPTADKPLRRAAINMDDEQGATVAARA---ACPVIGYGICRGDVRAEELSLSVDGIRAR 306

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       D    L G F + N L A    IA+ +    +   +E    VPGR E V  N
Sbjct: 307 LVTPKGSIDVSSRLLGRFNLSNILAAVSAGIALDLPLEAIRAGIEGHATVPGRMERV-DN 365

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAHT ++LE +L  ++ +  GRII VFGCGGDRD GKRPIMG+IA  ++D+
Sbjct: 366 RCGITLLVDYAHTGDALENVLTTLKELAQGRIITVFGCGGDRDPGKRPIMGRIAASMSDL 425

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------------------------PGFIEKGNRI 446
           AIVT DNPR+EDP  I  +I  GI                           GF+   NR 
Sbjct: 426 AIVTSDNPRTEDPFSILEQIRGGITPLGIREYGVDELADRSGKGLAEGADKGFVSLENRR 485

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI  A+ +    D++++AGKGHE   I+    K    D +  R  L
Sbjct: 486 EAISLAVRLARPGDIVLLAGKGHEDYQIIGR-TKHHFDDREEARLAL 531


>gi|33593958|ref|NP_881602.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella pertussis Tohama I]
 gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella pertussis Tohama I]
 gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS]
          Length = 945

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 157/480 (32%), Positives = 239/480 (49%), Gaps = 26/480 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  DSR I+ G +FVA  G   DG  F+ QA+A+GA AI+  +  +         +   
Sbjct: 31  DLRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYETEGA-----PVAPAGAQ 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V   R  L   A   YG+  ++  ++A+TGT+GK+S   ++ Q+  R G     IG 
Sbjct: 86  ALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGT 145

Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +    Q     LTTP  + + + L+ + + G   V++EASS G++Q RLD I++   
Sbjct: 146 LGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVA 205

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T Q Y  AK  LF+   P    A++ ADD   + ++     A    
Sbjct: 206 GFTNLTRDHLDYHGTMQRYEQAKAALFQW--PDLQAAVVNADDPAGERLLASLPAALKTG 263

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+      +H + + A  + Q  T+++   +   +  L G+  + N L+ AG    +G 
Sbjct: 264 YSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSKLGW 323

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKNIRTI 379
               +   L  +  V GR + V            +G  + VDYAHT ++L   L  +R +
Sbjct: 324 PLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPV 383

Query: 380 TS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ VFGCGG+RD GKRP MG+IA++ AD  +VT DNPRSE P+ I  +I+ GI
Sbjct: 384 AQARGGRLVCVFGCGGERDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGI 443

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P       + +R  AI   +      DV+++AGKGHET   +  G K    D    R  L
Sbjct: 444 PAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHETYQDIG-GRKLPFDDRQWARLAL 502



 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 136/386 (35%), Gaps = 22/386 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G +FVA+ G   DGH ++PQA + GA A VV+   +            P 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVA--------LPQ 561

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV+ +T   L    +         ++AVTG++GK++    +  I  +      ++     
Sbjct: 562 LVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGN 621

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++           P+ L +  +           +  +  G  +             TN 
Sbjct: 622 FNNEI-------GVPLTLLRLRARHR---AAVFELGMNHPGEIERLAAMAAPTVALVTNA 671

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++  T +A   A           E    +Y  D     +  +   A   +     
Sbjct: 672 QREHQEFMHTVEAV--AHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGARRVLRFGLQ 729

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G  ++ ++V    +  Q  +           P+PG   + NAL A    +A G      
Sbjct: 730 PGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTC 789

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
           +  L     V GR +    +     I   Y    +S    +  +  + + R +V+   G 
Sbjct: 790 IAALAGFQAVAGRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGE 849

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416
            GD        +G  A +    A++T
Sbjct: 850 VGDNGPAMHREVGDYAREHGIDALIT 875


>gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris
           DP4]
 gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris DP4]
          Length = 486

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 160/470 (34%), Positives = 234/470 (49%), Gaps = 15/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +  G +FVA+ G   DG  FI QA+AQGA  +V  +        A       +
Sbjct: 22  IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVCRADGLQHLPEAAFA----V 77

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            V D+ R  L       YG    P  ++ VTGT+GK+++   ++ +   +G     +G  
Sbjct: 78  AVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGTV 137

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           S       +   LTTP  + L + L  ++  GV    +E SSH LDQ R+ GI+      
Sbjct: 138 SYRWPGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAVL 197

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH   + YFNAK RLF EL        + ADD + + ++     A    L+
Sbjct: 198 TNLTQDHLDYHGDMETYFNAKARLFRELPEVSKHCAVNADDPWGRRLLADLPGAVGFALT 257

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGI 327
                   HL       +   V + +  +   +    PL G     N L    + + +G+
Sbjct: 258 GAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLGL 317

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A  +  LE    VPGR E + TN RG  ++VDYAHT ++L  +L+ +R +   RI+ V
Sbjct: 318 SPADFVH-LENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRIVTV 375

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGN 444
           FGCGG+RD+ KRP+MG      AD+A++T DNPR EDP  I  ++   + G    + + +
Sbjct: 376 FGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVAEAD 435

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           R +AI  A+EML   D L+VAGKGHE    V +  K    D   IREILG
Sbjct: 436 RRKAIALALEMLRPGDALLVAGKGHEDYQQVGD-RKLPFSDQQTIREILG 484


>gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella kingae ATCC 23330]
          Length = 491

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 150/470 (31%), Positives = 223/470 (47%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR IQ   +F+A  G   DG  +I  AI +GA  +   +             N PI
Sbjct: 26  LHSDSRKIQPNDVFIACQGEYADGRNYIQSAIEKGAAFVYWDADGDFVWNENWQIPNQPI 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ--RSGLSSFQIG 148
                 R+   + A+ +YG      NI+ VTGT+GK+S+  ++ Q      +  +   IG
Sbjct: 86  ---AELRQRAGILANSVYGNVSGSLNIIGVTGTNGKTSITQWLAQAIDILENKSACAIIG 142

Query: 149 PTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     Q+   TTP P+ +   L      G +H+++E SSHGL Q R++G+     
Sbjct: 143 TVGNGYWGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFRVNGVPFQTA 202

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH + + Y  AK RLF     +   AII +DD +  +++     +   V
Sbjct: 203 IFTNLTRDHLDYHNSMEEYGEAKARLFHWQGLQN--AIINSDDEFGAKLVAELKQSSLHV 260

Query: 268 LSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S G+     I + +  A     ++ +     +      L G F   N   A G   A G
Sbjct: 261 YSYGFNEHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNFAAALGALCAEG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRI 384
                 L+ L ++    GR +          + VDYAHT ++LE  L  +R I     ++
Sbjct: 321 YAFQAALKALAQIRAATGRMD-CIIRENKPLVVVDYAHTPDALEKALSTLREIQQPESQL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKG 443
             VFGCGG+RD+GKRP+MG +A   AD  +VT DNPR EDP  I A+I+  +P   + + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAVAAQGADKVVVTSDNPRMEDPNAIIADILPTVPNAALVQV 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AI   I     QD++++AGKGHET   V  G K    D +I +  L
Sbjct: 440 DRQTAIEQTIAQAAPQDIVLIAGKGHETYQDVQ-GVKHHFSDFEIAQLAL 488


>gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           AB900]
          Length = 499

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 147/488 (30%), Positives = 230/488 (47%), Gaps = 30/488 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              QW  +  +  S DSR ++ G IF+A+       K     F   A+A GA A++  + 
Sbjct: 13  IDAQWPRQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVCPDVRQRMGEWQKRYLQQADGVKPLRIIAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+    K +   +    A
Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAQA 240

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  + + A  ++L+          ++  +          +  +   F    PL G 
Sbjct: 241 DLMINSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGH 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT ++L
Sbjct: 301 FNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I 
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIF 418

Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           A++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +    D
Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477

Query: 486 CDIIREIL 493
              +R  +
Sbjct: 478 VVEVRSAI 485


>gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
 gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
          Length = 485

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 233/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    +      I P      ++  ++ DSR+I  G IF+A  G + DG+ F 
Sbjct: 1   MNLKELLHNIDIDAKVYGKISP-----IEVRNLTKDSRNIGFGDIFIANKGKRCDGNDFA 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+  GA A+V S              +   ++  N     +  A++ Y        ++
Sbjct: 56  SLAVENGAIAVVSS--------IYNPFLSVVQIISPNLSLLEAQLAAKYYNYPSRKLCVV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  ++ +       S  IG    I  +    +  TTP    L K L+ +
Sbjct: 108 GITGTNGKTTVSHLIKFLFDACDKPSGLIGTIEHILGNNRIQDGFTTPESCLLQKYLAEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +T   +E SS GL   RL  ++   G  TN+  DH+D+H + + Y  AK++LF + 
Sbjct: 168 VKSNLTAAVIETSSIGLVLDRLANVEFDVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQ- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L     A++  D   +K+ ++                       +          +  +G
Sbjct: 227 LSDSGLAVVNNDLPQAKQFLEATRAVPVTYGIEQLADY--RASNLRFSPFGADFDLIHKG 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + F    PL G++ VYN L A  +       D   ++  +  +    GR E     S   
Sbjct: 285 EIFPCHSPLIGQYNVYNVLAAIAVTHQRLNCDLQQLVSLVASVKSPRGRLE--PIQSGPC 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            IY+DYAHT ++L+ + + +RT+    G++IVVFGCGGDRD+ KR IM ++       A+
Sbjct: 343 PIYIDYAHTPDALDNVCQTLRTLLPSGGKLIVVFGCGGDRDRSKRKIMAQVVEKYG-FAV 401

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR EDPE I  EI  G     F  + +R +AI  A+ + + +D+++VAGKGHET 
Sbjct: 402 VTSDNPRGEDPETIVNEICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETY 461

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I  +       D +++ E+L 
Sbjct: 462 QIFKHQTIA-FDDREVVHEVLS 482


>gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
 gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
          Length = 485

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 150/480 (31%), Positives = 235/480 (48%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  +      +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKE 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   +++D+ R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKH-------NVSYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVE 120

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG     I     +   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R++ +      FTNL +DH+DYH T + YF AK +LF +L    +  I   DD Y K 
Sbjct: 181 IGRVEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVI-NIDDEYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G  G  +    +   +    + I  + +     F L G+F +YN 
Sbjct: 240 LYDEFIVDNSEIISYGIDGGDLEGDYLDDGY----IDIKYKKQVEKVKFALLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDCG-QNYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  
Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +  + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
          Length = 485

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 149/480 (31%), Positives = 234/480 (48%), Gaps = 19/480 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +  +      +RK + +  DSR I+  +IFVA  G   DGH +I  A+  GA  I+VS  
Sbjct: 8   EYKVLKDVNLDRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKE 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++        N   +++D+ R  L   AS  Y      +  +  T      +S     
Sbjct: 68  VEMKH-------NVSYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVE 120

Query: 137 CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                +   +IG     I     +   TTP  + L K       + + +V +E SSH L+
Sbjct: 121 KLMGDIPITRIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLE 180

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R++ +      FTNL +DH+DYH T + YF AK +LF +L    +  I   DD Y K 
Sbjct: 181 IGRVEVVDFDYALFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVI-NIDDEYGKR 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          ++S G     +    +   +    + I  + +     F L G+F +YN 
Sbjct: 240 LYDEFIVDNSEIISYGIDSGDLEGDYLDDGY----IDIKYKKQVEKVKFALLGDFNLYNT 295

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ + IGI    +L+ +  +   PGRFE +    +  ++ VDYAHT ++L  ++  
Sbjct: 296 LGAIGIALKIGISMEEILKRVSTIKAAPGRFEALDCG-QNYKVIVDYAHTPDALVNVIVA 354

Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            R I +  RII +FGCGGDRD+ KRPIM K+  DL+DI I+T DNPR+E+PE+I  ++  
Sbjct: 355 ARNIKNVNRIITIFGCGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKK 414

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G      +  + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 415 GFIKSDDYFFEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Bacillus sp. m3-13]
          Length = 496

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 223/469 (47%), Gaps = 14/469 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ + SDSR +    +FV I G   DGH +I  AI +GA  IVV      QD    +   
Sbjct: 23  VSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVV------QDMPEQLVEG 76

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              + V +T + L   A+  +        I+ VTGT+GK++V+S +  + ++ G  +   
Sbjct: 77  ICYVHVRDTERALGQLANAFFDFPSTKLRIVGVTGTNGKTTVSSVINNVMRKEGYKTGLS 136

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G           +++ TT   + + + L  +   GVT V +E SSHGL   RL G++   
Sbjct: 137 GTIEIDIDGEKFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGRLAGVEFQN 196

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL +DH+D+H T + Y NAK  LF +L            +             G R
Sbjct: 197 GVFTNLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKDYVQMTGAR 256

Query: 267 VLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++ G + +     +++    NK    +     +F+   P  GEF VYN L    +    
Sbjct: 257 IITYGIKNEADFKAREIQFFENKTSFVLETNFGEFELEIPFVGEFNVYNILSVICVLWDK 316

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    +L HL +     GR + + T      + +DYAHT +++   L +IR  +  +II
Sbjct: 317 GMPFERILNHLRETTPPSGRMQTLETGD-KRNVIIDYAHTEDAIGKALDSIRMFSKHKII 375

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKG 443
            + G GG RD+ KRP MG+IA + ++  I T DNP  E  E+I   +  G     F    
Sbjct: 376 SIIGTGGGRDKDKRPKMGRIATEKSEYVIFTTDNPLDEPGEEIVQGMAEGAVHENFECIP 435

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +R +AI  A+E+  + DV+++AGKGHE   ++ N E     + +I  + 
Sbjct: 436 DREQAIIRAVEIAGEGDVILIAGKGHENYQLIGN-ESVPFDEKEITLKA 483


>gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
 gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
          Length = 483

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 144/502 (28%), Positives = 233/502 (46%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+     ++  ++S         ++  ++ DSR++  G IF+A  G + DG+ F 
Sbjct: 1   MNLKELLNNIEAKIYGKVSP-------IEVRNLTKDSRNVGFGDIFIANKGKQFDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P AI  GA AI  S              +   +V  N  +  +  +++ Y    +   I+
Sbjct: 54  PLAIENGAIAIASS--------IYNPFLSVVQIVSSNLPQLEAELSAKYYNYPSKKLCIV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V+  ++ +       S  IG    +  +    +  TTP    L K L+ +
Sbjct: 106 GVTGTNGKTTVSHLIKTLFDGCNKPSGLIGTIEHVLGNNRIQDGYTTPESCLLQKYLAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +T   +E SS GL   RL  +    G  TN+  DH+D+H + + Y NAK++LF + 
Sbjct: 166 VKNRLTSAVMEVSSVGLVLERLAEVDFDVGVLTNITLDHLDFHGSFEEYINAKLKLFSK- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP    A++  D +Y+   ++                       + +        +   G
Sbjct: 225 LPATGLAVVNGDLSYASRFLEMTQAQPITYGI--ECPADYRAMHLRSSPFGTDFDLVYRG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +      PL G+  VYN L A  +       D   ++     +    GR E     S   
Sbjct: 283 ESLPCRLPLIGKHNVYNILAAIAVAHQHCNGDLQQLISLAANVESPRGRLE--PVFSGPC 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            IY+DYAHT ++LE + K +  +    G++IVVFGCGGDRDQ KR IM ++       A+
Sbjct: 341 PIYIDYAHTPDALENVCKTLHALLPEQGKLIVVFGCGGDRDQSKRQIMAEVVERYG-FAV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR EDPE+I   I  G     F  + +R +AI  A+ + + +D+++VAGKGHET 
Sbjct: 400 VTSDNPRGEDPEEIIKAICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETY 459

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I  +       D +I+RE+L 
Sbjct: 460 QIFKHQTIA-FDDKEIVREVLS 480


>gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           RCH1]
          Length = 486

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 160/470 (34%), Positives = 234/470 (49%), Gaps = 15/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +  G +FVA+ G   DG  FI QA+AQGA  +V  +        A       +
Sbjct: 22  IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVCRADGLQHLPEAAFA----V 77

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            V D+ R  L       YG    P  ++ VTGT+GK+++   ++ +   +G     +G  
Sbjct: 78  AVHDDPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGTV 137

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           S       +   LTTP  + L + L  ++  GV    +E SSH LDQ R+ GI+      
Sbjct: 138 SYRWPGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAVL 197

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH   + YFNAK RLF EL        + ADD + + ++     A    L+
Sbjct: 198 TNLTQDHLDYHGDMETYFNAKARLFRELPEVGKHCAVNADDPWGRRLLADLPGAVGFALT 257

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGI 327
                   HL       +   V + +  +   +    PL G     N L    + + +G+
Sbjct: 258 GAPVSGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLGL 317

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A  +  LE    VPGR E + TN RG  ++VDYAHT ++L  +L+ +R +   RI+ V
Sbjct: 318 SPADFVH-LENFTGVPGRLERI-TNDRGLDVFVDYAHTPDALVNVLRALRDVGFTRIVTV 375

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGN 444
           FGCGG+RD+ KRP+MG      AD+A++T DNPR EDP  I  ++   + G    + + +
Sbjct: 376 FGCGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGAREVVAEAD 435

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           R +AI  A+EML   D L+VAGKGHE    V +  K    D   IREILG
Sbjct: 436 RRKAIALALEMLRPGDALLVAGKGHEDYQQVGD-RKLPFSDQQTIREILG 484


>gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
 gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
          Length = 556

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 150/519 (28%), Positives = 232/519 (44%), Gaps = 60/519 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +N +S DSR I  G +FVA+ G    G +FIP AI +GA AI+   A +  D     R
Sbjct: 33  IPVNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKKGAVAILS--ATTASDVFVEYR 90

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P++ + +  ++LS  A   Y    + +  + +TGT+GK+S A    Q+   +G +  
Sbjct: 91  DEIPVIFIPHLEQYLSEIAGNFYHHPTKKVPVIGITGTNGKTSCAQIYAQLSAFNGSAVG 150

Query: 146 QIGPTSTISSFAQDNR-----------------------------------------LTT 164
            IG     +     +                                          +TT
Sbjct: 151 VIGTMGYGACRPHVSHKNSQDKDFQDKGFQDKSSQNSHASQSRAGQPGYSLSLVSTGMTT 210

Query: 165 PSPIYLAKALSYLSSQGVTHVS-------VEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           P  I        L        +       +E SSHGL+Q R+  + + +  FTNL  DH+
Sbjct: 211 PDAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGRVSALDINSAIFTNLTHDHL 270

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKF 276
           DYH    AY NAK +LFE        AI+  DD +S E+  K A        S+      
Sbjct: 271 DYHGDMVAYGNAKAKLFEMPTIN--LAIVNLDDEFSHELTTKIASTVRVISYSIDNANAD 328

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           ++L  +   H++    +    + +    PL G F + N L+A     +   + + V+   
Sbjct: 329 LYLDNIRYGHSQLLADLYCNNEIYALSTPLIGRFNLSN-LLAVLSVFSQQQNFSQVVASA 387

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           + L  + GR E V  N  G ++ VD+AHT ++L+ +L+ +     G +  VFGCGGDRDQ
Sbjct: 388 QYLQPISGRMESV-ENQEGIQVVVDFAHTPDALDNVLQAVSEYVDGEVYCVFGCGGDRDQ 446

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIE 454
            KRP+M  +A   AD  +VT+DNPRSE+P  I  +++ G           R EAIR AI 
Sbjct: 447 SKRPLMAAVAERYADHVVVTNDNPRSENPTDIAQQVVQGFSSNNHCVIEEREEAIRFAIH 506

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                D++V+AGKGHE+  ++ + +K    D  +    L
Sbjct: 507 HAKIGDMVVIAGKGHESYQLIGD-QKIPFSDRQVALSAL 544


>gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
 gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
          Length = 538

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 149/523 (28%), Positives = 238/523 (45%), Gaps = 48/523 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L+DL+      L            +  +  +  DSR +  G +FVA+ G K+ G   + 
Sbjct: 14  RLKDLLTGLATFL---------DQDDIPVAGLVLDSRELVCGDVFVALAGAKQHGLAHVE 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPENI 117
           QA+  GA A++   A + +  +   R +     P++ V+N    L   A+R Y    + +
Sbjct: 65  QAVNNGACAVIFDPAGNGRQLAEAFRCDSSTPVPMIAVENLGLKLGELAARFYCDPSQFM 124

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174
             + +TGT+GK+S + F+ Q+    G     IG               TTP  + + K L
Sbjct: 125 TVIGITGTNGKTSCSQFLSQMLDDCG----IIGTLGWGEWDKLNKTLNTTPDALAIQKIL 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L       V++E SSHGL+Q R++G+      FTN+ RDH+DYH T  AY  AK+ L 
Sbjct: 181 AELLKDKKRTVAMEVSSHGLEQGRVNGVTFKGAVFTNISRDHLDYHGTMDAYVQAKLALL 240

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQ 289
           +   P  + A +  DD YS+ V+     +               G+ +  + +    +  
Sbjct: 241 K--QPGLAFAAVNLDDGYSERVIAAVPESVQLWQFSVKGKTADSGECVSAENILHKTDGI 298

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  +    +      PL G+F V N L    + +A+ +     ++ L  +  V GR E  
Sbjct: 299 EFDVRFRDELQRVQVPLFGDFNVENVLAVLTVMLAMEVSLQEAVKKLAGIKPVNGRMERF 358

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +    I+VDYAHT ++L+ +L ++R      + VVFGCGG+RD GKRP MGKIA   
Sbjct: 359 GAET-DPMIFVDYAHTPDALDKVLSSLRKHCKQALWVVFGCGGNRDTGKRPQMGKIAEQW 417

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------------------GFIEKGNRIEAIR 450
           AD  ++TDDNPR E+   I  +I+ G                           NR +AI+
Sbjct: 418 ADHVVITDDNPRYENGLDIVNDILAGCSSTAKDGGSVATDMEPVRPAKVEVIQNREQAIQ 477

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +    K D +V+AGKGHE     +NG      D  ++ + L
Sbjct: 478 KVVASAAKNDCIVIAGKGHEQYQE-SNGVCVPFSDRQVVIDAL 519


>gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 492

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 154/501 (30%), Positives = 231/501 (46%), Gaps = 25/501 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  L   +FP L+ + +   +         + SDSR I+ G IFVA  G   DG  +IP
Sbjct: 4   KLTPLAETNFPPLLCENAAGRL---------LHSDSRQIKQGDIFVACQGEYTDGRSYIP 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            AIA GA  +          F+       P   + + +    + A+++YG   +   +  
Sbjct: 55  AAIANGATFVFWDDDGK---FTWNPEWKVPNQGIKDLKHRAGMLAAQVYGNVSDGLKVWG 111

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S+  ++ Q     G  +  IG          ++   TTP+P+ +   L    
Sbjct: 112 VTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWGALEEATHTTPAPVDVQTLLYRFR 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            QG T  ++E SSHGLDQ R++G+   +  FTNL RDH+DYH T +AY    ++      
Sbjct: 172 QQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRDHLDYHGTMEAYG--AIKSRLFYW 229

Query: 239 PKESPAIIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                AII  DD Y  E+   +K+             +   I +    A  +  +     
Sbjct: 230 HGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQADIRITDFTASSDGMEAVFQT 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      L G F   N      L  A G     VLE L K+    GR +    NS  
Sbjct: 290 PWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLEVLAKIRPASGRMD-CIMNSGK 348

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             + VDYAHT ++LE  L  ++ I      +  VFGCGG+RD+GKRP+MG  A+  AD  
Sbjct: 349 PLVVVDYAHTPDALEKALSTLQEIKPQGAALWCVFGCGGNRDRGKRPLMGAAAVQGADKV 408

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +VT DNPR E+P+ I  +I+  +P     + +R  AIR A+E     D++++AGKGHE  
Sbjct: 409 VVTSDNPRLENPQDIINDILPAVPAPECVEADRAAAIRYAVERAAANDIILIAGKGHENY 468

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  G K    D ++  + L
Sbjct: 469 QDMQ-GVKHHFSDFEVAEKAL 488


>gi|86608711|ref|YP_477473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557253|gb|ABD02210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 510

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 159/499 (31%), Positives = 248/499 (49%), Gaps = 12/499 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + K   +   Q  +        ++  + +DSR +Q G +F+ + G++ DG  F+ QA+A 
Sbjct: 8   LSKLLHQAGIQPQLAQGSLEGVQVWGLCADSRQVQPGDLFLGMPGSRVDGGSFVAQALAA 67

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENI--LAVTG 122
           GA A ++S              + P+LV+   +  + ++  A+  YG     +  + VTG
Sbjct: 68  GAVAALISQEAWESVSGEAGWGSQPVLVLPRASLNRAVAQVAAAFYGFPARQLTLVGVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++    ++ + Q +G S+  +G   +    +++    TT  P  L ++L      G
Sbjct: 128 TNGKTTTTHLIEHLVQAAGRSAALLGTLYNRWPGYSEVASHTTLFPPELQRSLREAQRAG 187

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +E SSH L Q R+ G    A  +TNL +DH+D+H + + Y+ AK  LF +    +
Sbjct: 188 AEVAVMEVSSHALAQDRVWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKATLFRQE-YLQ 246

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGK 298
             A+I ADDA  + +++                + I       V    +  Q T+     
Sbjct: 247 GRAVINADDAGGRRLLQAIRPDLQPWAYSLQPLQGIPGLWPSNVQLHPSGLQATLHTPSG 306

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            F    PL G F + N L A G+ + +GI   ++   L     VPGR E V    +   +
Sbjct: 307 AFAVAAPLVGSFNLANLLAAVGVALHLGIPVEIIQSALPHFPGVPGRMERVTLPGQDIAV 366

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT + LE +LK +R+   G++I VFGCGGDRD+GKRP MG+IA   AD  IVT D
Sbjct: 367 IVDYAHTPDGLENLLKALRSQVQGQLICVFGCGGDRDRGKRPQMGRIAATWADQVIVTSD 426

Query: 419 NPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           NPR+EDP++I  +I+ GIPG     + +R +AIR AI      D +V+AGKGHE   I+ 
Sbjct: 427 NPRTEDPQQILRDILAGIPGSPRAVEVDRRQAIRLAILAAQPGDTVVIAGKGHEDYQILG 486

Query: 477 NGEKKMSVDCDIIREILGL 495
             EK    D +  R  L L
Sbjct: 487 T-EKIHFDDREEARAALAL 504


>gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 490

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 154/477 (32%), Positives = 238/477 (49%), Gaps = 26/477 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S  S+ ++   IF A  G K DGH FI +AI +GA  +V             +  N
Sbjct: 25  IKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKK------PVLLHKN 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              ++V N+   L   +S  Y    + I  + +TGT+GK+SVA+ +  +  + G  S  I
Sbjct: 79  ITYVIVKNSMDALGTISSNFYDHPTKKIKLVGITGTNGKTSVATILHHLFYKMGEKSILI 138

Query: 148 GPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                   S     + TTPS + + K L+    +G  +  +E SSHG+ Q R+ G+    
Sbjct: 139 STMGIKILSQEFPTKHTTPSIVDINKYLNLSIQKGCKYAFMEVSSHGIHQKRIAGLLFTG 198

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN+  DH+DYH++ + Y + K   FE  LPK + A+I +DD  S E++K       +
Sbjct: 199 GVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSHEIIKNVL---AK 255

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +   G + K  +  K+   +      +    K F F   L GEF V N L      I +G
Sbjct: 256 IYFYGLKKKTDYRIKIMKKNIHGNQLLIDGHKFFTF---LIGEFNVSNLLACYATAILLG 312

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                +L+ +  +  + GRFE    +  G RI VDYAH  + ++ +LK I+ I     R+
Sbjct: 313 KKKEEILQKINTIPPIKGRFEQF-ISYSGIRIIVDYAHNPDGIKNLLKAIQEIKKQEERL 371

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-------HGIP 437
           I + GCGG+RD+ KR +MGKI  +  D++I T DNPR EDPEKI  ++            
Sbjct: 372 ICIIGCGGNRDKEKRSLMGKIVYETCDLSIFTSDNPREEDPEKILIDMKNFRSYLNKDKE 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +   NR EAIRTAI+M  ++D++V+AGKGHE    +  G++    D +I + +  
Sbjct: 432 DILTIVNRKEAIRTAIQMAREKDIIVIAGKGHENYQEIQ-GKRYPFDDMEIAKTLFS 487


>gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 485

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 154/471 (32%), Positives = 240/471 (50%), Gaps = 21/471 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            RK + +  DSR ++  +IFVA+ G   DGH +I  A+  GA  I+VS    ++      
Sbjct: 18  NRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKH----- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 +++D  R  L   AS  Y + P+  L + G +G +   S    I +  G +   
Sbjct: 73  --KVSYVLIDEIRHKLGYLASNFY-EWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPIT 129

Query: 147 I-GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             G     I     +   TTP  + L K       + + +V +E SSH L+  R+D +  
Sbjct: 130 RIGTIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVDVLDF 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH T + YF AK +LF + L   + ++   DD Y K++        
Sbjct: 190 DYALFTNLTQDHLDYHVTMENYFQAKRKLFLK-LKDTNNSVFNIDDKYGKKLYDEFIEDN 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++S G  G  +  + +   +    + I  + K     F L G+F +YN L A  + + 
Sbjct: 249 PEIISYGIDGGDLEGEYLDDGY----IDIKFKEKVEKVKFALLGDFNLYNTLGAVAIAVK 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-R 383
           +GI    +LE +  +   PGRFE +    +  ++ VDYAHT ++L  ++   R I +G R
Sbjct: 305 MGIKWEDILERISNIKAAPGRFEALNCG-QDYKVIVDYAHTPDALVNVIVAARNIRNGNR 363

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           II +FGCGGDRD+ KRPIM K A +L+DI I+T DNPR+E PE+I A++  G      + 
Sbjct: 364 IITIFGCGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKTGFAKNDDYF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + +R +AI+ AI M  K D++++ GKGHET HI+   +K    D +I R 
Sbjct: 424 FEPDREKAIKLAINMAEKNDIILITGKGHETYHIIGT-KKWHFDDKEIARR 473


>gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
          Length = 492

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIRDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFCSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHDLQHAVINVDDEYGAELVGRLKKDCPDLVV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YSYGFSEQADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P       
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPNPERVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D ++  + L
Sbjct: 440 DRAAAIRYAVERAAASDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488


>gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 769

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 146/514 (28%), Positives = 253/514 (49%), Gaps = 37/514 (7%)

Query: 11  FPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             EL+++  + P+      E +I  +  DSR + +G +FV  VG K DGHL++ +A  +G
Sbjct: 243 LAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADKRG 302

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A A+V S    +++          +++V++T   L   A+  YG   +N+  + + GT+G
Sbjct: 303 AVAVVASKEIDIEETLGCKA----LVIVEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNG 358

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           K++ A  ++ + +  GL +  +   +         +   TTP  + + K ++ +   G  
Sbjct: 359 KTTTAYLIRAMYEAMGLRTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTE 418

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +EASSHGL   R + +      FTNL RDH+D+H++++ Y NAK +LF  ++  +  
Sbjct: 419 AVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDRH 478

Query: 244 AIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             I   D  +    + +   +      ++  +   +H  K      + QV +       +
Sbjct: 479 RKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILE 538

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   +YN L A  + IA+G     ++  +E++  VPGR E +    +   + VD
Sbjct: 539 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELI-DEEQAFGVIVD 597

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++L  +L ++R + + RII VFGC G+ D+GKRPIM KIA D +D+ I+T DNP+
Sbjct: 598 YAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSDNPK 657

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEMLNKQ 459
           +EDP  I  +++ G+   +    +  A                         A+ M  + 
Sbjct: 658 NEDPLDILDDMLAGVGWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEG 717

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D++VVAGKGHET  I  + +K+   D +  RE L
Sbjct: 718 DIVVVAGKGHETYQIEGD-KKEFFDDREECREAL 750


>gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 487

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 156/500 (31%), Positives = 254/500 (50%), Gaps = 25/500 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I K   +L+  +    +Q + E ++  ++ D+R +  G +F+ +     D H F  +AI
Sbjct: 1   MIGKKLVDLLAGVDYKVLQGKIEHEVKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
            QGA  +++            +     I+ VD++RK +S+ A   Y K  E   ++ VTG
Sbjct: 61  KQGATILMIEHEID------QVPEKVTIIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLS 178
           T+GK+S+  F+ Q+    G  +  IG             +    TTP  I L  +L  + 
Sbjct: 115 TNGKTSITHFIAQVLSTLGEKTGVIGTIRNTLEGEKLKTKKINPTTPDAIELQASLKEML 174

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G T+  +E +S  L Q+R+ G+    G FTNL +DH++ H T +AY  AK++     L
Sbjct: 175 DKGATYGVMEVTSSALAQNRVYGMAYQVGVFTNLTQDHLEEHGTMEAYGAAKLK-----L 229

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K     I   D    E +K+  +       +  +  F   +++          +   GK
Sbjct: 230 FKNCRIGIVNQDDLMAEKIKQEGHCKVITYGIDKKADF-KAEQIHQGLTGVDFKLIYLGK 288

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +   FP+PG F VYNAL      +++G +   +LE L  ++ VPGRF+ +  N++G  +
Sbjct: 289 QYSINFPVPGRFSVYNALATIATLVSLGYELTNILEALHWINEVPGRFQIIP-NTKGVLV 347

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH+ +SL+ +L+  + + SG++ VVFGCGGDRD  KR  MG +A   +D+ I+T D
Sbjct: 348 VVDYAHSPDSLKQLLQTTKDLISGKLTVVFGCGGDRDTSKRAEMGTMAGAYSDLTIITSD 407

Query: 419 NPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR+E PE+I A+I  GI      +    NR  AI  A+    + D +V+AGKGHET  +
Sbjct: 408 NPRNEKPEQIMADIEKGILEVKGRYEMIKNRKLAIVAALAEAEEGDAVVIAGKGHETYQL 467

Query: 475 VTNGEKKMSVDCDIIREILG 494
           + N +K    DC+I+   L 
Sbjct: 468 IGN-QKWHLDDCEIVSNYLN 486


>gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName:
           Full=UDP-MurNAc-tripeptide synthetase 2
 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 492

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 145/502 (28%), Positives = 229/502 (45%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +LI     ++  Q+   P       I+ +S +SR +    +F+ I G   DGH F+
Sbjct: 1   MNTYELISSL--KIKQQIGKLPN-----TISSISHNSRQVDDNSLFICISGFTVDGHNFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +A+  GA  IV     +L        +   +++V +T K ++  A+  Y     N  I 
Sbjct: 54  AEAVENGATCIVAEREVNLD------TNKATLIIVPDTNKAIATLAATFYKHPSHNLTIY 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAKALSY 176
            VTGT+GK++V + +  +   + LS+  IG      +    +    TT   +     L  
Sbjct: 108 GVTGTNGKTTVTTIINHLLTDNELSTALIGTNGFQINKDIYSSSNNTTSDVLTNQHMLYE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233
             +QGVTHV++E SSHGL+Q RL GI     +FTNL  +H+DYH + + Y   K      
Sbjct: 168 AKNQGVTHVAMEVSSHGLEQGRLWGIDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSS 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 K+  A++  DD + +   KR                      +    ++    +
Sbjct: 228 LAIQPNKQKIAVLNRDDNWYEYFQKRTPVQIVSYGIYEQAD--FRATAIKYYKDRTSFEL 285

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTN 352
                 F     L GEF VYN L A         I    +++ +E     PGR E +  +
Sbjct: 286 LTPEGSFQVQTKLMGEFNVYNVLAAIASVYVKESIPLTDLVKSIEGTPTPPGRMEKL-ES 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           S    IY+DYAHT ++L   + ++      ++IVV G GGDRD+  RP++ K A  +AD 
Sbjct: 345 SGNRHIYIDYAHTPDALTKAINSLLPFKQNKLIVVVGTGGDRDKSIRPLLAKAAS-VADY 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I+T ++PR EDP  I  ++ +G+    +    NR EAIR AI   +  D++++AGKG E
Sbjct: 404 VILTINDPRHEDPNNILQDLENGMLHHQYTCLENRKEAIREAINYSSPNDIILIAGKGKE 463

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
              I+ N +K    D  I  E 
Sbjct: 464 PYQIIKN-KKVAHNDATIALEC 484


>gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans
           C54]
          Length = 954

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 160/484 (33%), Positives = 240/484 (49%), Gaps = 25/484 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  +    +A    +TP
Sbjct: 30  HLKLDSREIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPATAAIEAAAAAGDTP 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   R  L       YG+      ++AVTGT+GK+S   ++     R+      IG 
Sbjct: 90  MLPVTGLRALLGELGDTWYGRPSSTLAVVAVTGTNGKTSSVQWIAHALGRNDKPCGTIGT 149

Query: 150 TSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +    Q     LTTP  + + + L+ +   G   V++EASS G++Q R+DG+++   
Sbjct: 150 LGAVLPDGQTLGGHLTTPDVLTVHRLLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALA 209

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNA 263
           ++TNL RDH+DYH T + Y  AK  LF    P  S A++ ADD   + ++          
Sbjct: 210 AYTNLTRDHLDYHGTMERYEAAKASLFRW--PGLSAAVVNADDEAGRRLIASLPADLSVM 267

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G  + +       +  + + A    Q  T+     +   +  L G   V N L+ AG+  
Sbjct: 268 GYSLSADPAIPAAMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVLY 327

Query: 324 AIGIDSALVLEHLEKLHVVPGRFE--------FVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            +G+  A +   L     V GR +              RG  + VDY+HT +SL   L  
Sbjct: 328 KLGLPFAQIARELAATDPVDGRLQTVEPVAASTQAHAGRGALVVVDYSHTPDSLARALMA 387

Query: 376 IRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +R +     GR++ VFGCGGDRD GKRP MG+IA +LAD  +V+ DNPRSE P+ I A+I
Sbjct: 388 LRPVAQARAGRLVCVFGCGGDRDAGKRPEMGRIAAELADHVVVSSDNPRSESPDAIVAQI 447

Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + GIP       + +R  AI  AI     +DV+++AGKGHET   +  GEK    D +  
Sbjct: 448 LAGIPASVAVEVQVDRARAIMQAIWASAPEDVVLLAGKGHETYQEIA-GEKLPFDDREWA 506

Query: 490 REIL 493
           R  L
Sbjct: 507 RLAL 510



 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 152/429 (35%), Gaps = 33/429 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55
           L+     E   +++   + + +R+          +  VS+D+R I AG +FVA+VG   D
Sbjct: 481 LLAGKGHETYQEIAGEKLPFDDREWARLALLLPLVKGVSTDTRRIGAGELFVALVGENFD 540

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H ++ QA  +G        A +     A   S+ P LV+ +TR  L    +    +   
Sbjct: 541 AHNYLDQAAERG--------ACAAVVAHAVPESSLPQLVLGDTRVALMRIGAAWRARFKL 592

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++    +  +       + ++     +++            + L     
Sbjct: 593 PVVAVTGSNGKTTTKEMISAMLAGWRGEAGRLATAGNLNNDIGVPLT----VLRLRPEHR 648

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +   +   E +           +       TN  R+H ++  T +A   A      
Sbjct: 649 AAVFELGMNHPGEIAQLAAIAAPSVAL------VTNAQREHQEFMHTVEAV--ALENGAA 700

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                     +Y  D     +  R       +      G  ++ +++ A  +  +  +  
Sbjct: 701 IAALPADGVAVYPGDEPYAAIWDRLAAPRRALRFGLQPGLDVYAEQILADVDSTRCRVVT 760

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D   P+PG   + NAL A    IA G    + +  L     V GR ++   +   
Sbjct: 761 PVGSADLTLPVPGVHNLRNALAAIASAIAAGAPLDVAVRALAGFSPVAGRMQYKKLSDGT 820

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DI 412
             I   Y    +S+   +  +  I   R++V+   G  GD        +G  A +L  D 
Sbjct: 821 LLIDDTYNANPDSVRAAIDVLARIAGTRVLVLGDMGEVGDNGPAMHEEVGNYARELGLDA 880

Query: 413 AIVTDDNPR 421
            I   D  R
Sbjct: 881 LITLGDASR 889


>gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 495

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 218/473 (46%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++              
Sbjct: 19  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDGLPVPAD 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+  +   ++ VTGT+GK+S    + Q     G  +
Sbjct: 79  A-----IAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L   G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +     ++          
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAAVVNLDDAFGHTLFAALDPALR 253

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S  +    +  + +   HN     +++ G+      PL G F V N L  AG   
Sbjct: 254 AIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAVAGALW 313

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+    A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 314 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G       I
Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 433

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 434 VQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEVA-GVRHAFDDALVAAQAL 485


>gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 491

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 218/473 (46%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR ++ G  FVAI G    G  F+ QA A GA A++              
Sbjct: 15  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFEPPAPDGLPVPAD 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+  +   ++ VTGT+GK+S    + Q     G  +
Sbjct: 75  A-----IAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 129

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L   G   V++E SSH LDQ R+D + 
Sbjct: 130 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVAMEVSSHALDQGRVDAVH 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +     ++          
Sbjct: 190 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAAVVNLDDAFGHTLFAALDPALR 249

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S  +    +  + +   HN     +++ G+      PL G F V N L  AG   
Sbjct: 250 AIGVSSRAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAVAGALW 309

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+    A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 310 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 369

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G       I
Sbjct: 370 LICVFGCGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 429

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 430 VQRDRAAAIHQAIGMASPSDIVLIAGKGHEPYQEVA-GVRHAFDDALVAAQAL 481


>gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 502

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 155/505 (30%), Positives = 231/505 (45%), Gaps = 29/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L  +   + I              I  + +DSR I+ G +FV + G   DGH + 
Sbjct: 1   MILKSLTERLILKTITGS-------LSVDITNLDTDSREIRPGGMFVCVPGYHVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAI  GA AIV     S       +  N  ++ V +TR+ L + A+  YG   +   ++
Sbjct: 54  EQAIRNGAVAIVAERELS------GLSENVTLITVPDTRRILPILANAFYGDPTQRLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V +I   +   +  IG     I + A+    TTP  I L +    +
Sbjct: 108 GITGTNGKTTTTHMVDKILNDARRKTGIIGTLYMKIGNHAEKTLNTTPDTIQLMRYFHTM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
            S G  +  +E SSHGLD  R+ G       FTNL  DH+D+H+T ++Y N       +L
Sbjct: 168 ISHGGEYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHKTMESYRNTKELLFAQL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                     A++ ADD  S    KR                      +           
Sbjct: 228 GNSNRDMLKKAVLNADDDASSYYAKRTSAQIITYGIQNQADV--RATHIHHTREGCAFHA 285

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  +    + G   +YNAL A   C+  GI    + E L +   V GRF+ + T  
Sbjct: 286 ETPWGSSEVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQTGR 345

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           R   + VDYAH  + L+  L++ + ITSG++I V GC G+RD+ KRPIM  IA   AD  
Sbjct: 346 R-FGVVVDYAHNPDGLKATLQSAKAITSGKMICVMGCRGERDRSKRPIMADIASSYADYV 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + T DNP SEDPE+I AE++ G+       +    +R EAI+ A+EM   +D +++ G+G
Sbjct: 405 LFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGRG 464

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET   VT    +   D DI+   L
Sbjct: 465 HET-RYVTGSRIESFSDEDIVMSSL 488


>gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa]
          Length = 487

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 151/485 (31%), Positives = 237/485 (48%), Gaps = 14/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   +FP   R+  I E++ DS  ++   +F+ + G  +DG   I  A+ +GA A+   
Sbjct: 3   MSLSQLFPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
           +  + +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  
Sbjct: 63  AEGAGELPP----SDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQL 118

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T    A ++ R TTP P+ +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF     +     +  DD 
Sbjct: 179 HGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRVINL--DDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + + +     ++     S+     F++ ++     +      S+  K      PL G F 
Sbjct: 237 FGRRLAGEEQDSELITYSLTDSSAFLYCREASPTASPTARRSSIAAKQGLLRSPLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L A G  + +G     +L  L +L    GR + +G   +   + VDYAHT ++LE 
Sbjct: 297 LSNLLAAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGGKPL-VVVDYAHTPDALEK 355

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ +R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    I A+
Sbjct: 356 VLEALRPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIAD 415

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  G           +R EAI   I      DV+++AGKGHE    + +G +    D + 
Sbjct: 416 IRKGFAAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQ 474

Query: 489 IREIL 493
               L
Sbjct: 475 AERAL 479


>gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 499

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 146/488 (29%), Positives = 233/488 (47%), Gaps = 30/488 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
             +QW ++  +  S DSR +++G IF+A+       K    +F   A+A GA AI+  + 
Sbjct: 13  IDVQWSKQPFHGFSLDSRKVESGQIFIALTSYSQPEKT--RIFAESALANGALAIISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132
             L++            V  N R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 71  LGLENE----------WVCPNVRQRMGEWQQRYLQQIDPVAPARIVAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 IAELISSQQQQCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYTKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF     K +   +  + A
Sbjct: 181 HGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAVINLDDEYA 240

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  + + A  ++L+          ++  +          +  +   F    PL G 
Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSQQGSFAVQSPLLGH 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N + A       G D   ++  + +L   PGR + +    R     VDYAHT ++L
Sbjct: 301 FNVENLIAALIAAEQAGFDLEALVAFVPQLIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I 
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIF 418

Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           A++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D
Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477

Query: 486 CDIIREIL 493
              ++  +
Sbjct: 478 VVEVQSAI 485


>gi|145223570|ref|YP_001134248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315443917|ref|YP_004076796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
 gi|145216056|gb|ABP45460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315262220|gb|ADT98961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
          Length = 512

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 161/504 (31%), Positives = 238/504 (47%), Gaps = 14/504 (2%)

Query: 1   MKLQD-----LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           M L+      +      +L+           + ++  V+   +H QAG +F A+ G+K  
Sbjct: 1   MNLRPSHPVGMPLGALADLVCAEPADAGPVPDLQVTGVTLRGQHAQAGDLFAALPGSKAH 60

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  +   A+ +GA A++  +    +  +A      PILV    R  L   A+ ++G+  E
Sbjct: 61  GARYAADAVERGAVAVLTDADGVSE-IAAHGGPAVPILVHPAPRSVLGEVAAAVFGRPSE 119

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAK 172
              ++ VTGTSGK++    V+   + +G  +  IG         AQ   LTTP    L  
Sbjct: 120 HLRVIGVTGTSGKTTTTYLVEAGLRSAGRVAGLIGTVGVRIDGRAQPGGLTTPEAPDLQA 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+ +  QGV  V +E SSH L   R+DG+    G FTNL RDH+D+H T Q YF AK R
Sbjct: 180 LLAAMLEQGVDTVVMEVSSHALTLGRVDGVSFAVGGFTNLSRDHLDFHPTMQDYFEAKAR 239

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L +   P  +   +   D      M    +A   V   G    ++   +      +  + 
Sbjct: 240 LVDPTSPTHAARSVICVDDEWGRAMAARADAPVTVSVTGDADWWVQEVRALDGGVQDFLA 299

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +   G        LPG + V N L+A  L  A+ +        L    V PGR E V   
Sbjct: 300 VDPAGVHHALEIGLPGGYNVANCLLAVALLDAVDVSPEQAAPGLRDATV-PGRLEAVDRG 358

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                  VDYAH   +L  +L+ +R   +GR+ VVFG GGDRDQGKR  MG++A +LAD+
Sbjct: 359 Q-PFLALVDYAHKPGALAAVLQTLREQCAGRLAVVFGAGGDRDQGKREPMGRVAAELADL 417

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +VTDDNPR EDP  IRA I+ G  G   +E G+R  AI  A++   + D++++AGKGHE
Sbjct: 418 VVVTDDNPRGEDPAVIRAAILRGASGAQTVEIGDRRAAIVHAVQWAREGDIVLIAGKGHE 477

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
                + G  +   D D +   L 
Sbjct: 478 AGQT-SQGRTRPFDDRDELAAALE 500


>gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 506

 Score =  296 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 225/475 (47%), Gaps = 17/475 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR I  G  FVA+ G    G  +IP A+ +GA+ +V   A +    +  +      
Sbjct: 33  VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVA-PASARDLVAPAVEKRALA 91

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +  DN    L L A   +        ++ +TGT+GK++ +  ++ +   +G+    +G  
Sbjct: 92  VYHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGIKVGVLGTV 151

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +     F  D  LTTP    + + L  +    V    +E SSH LDQ+R+ G+   A   
Sbjct: 152 NYRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVL 211

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-------RAHN 262
           TN+ +DH+DYH   + YF AK RLF   L      +I  +D Y + ++            
Sbjct: 212 TNVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGIGYGIG 271

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V         +  + +       Q+  S +GK +    PL G F   N L A  + 
Sbjct: 272 DSSLVTHEVGDKPMVQGRILSLTGQGMQIETSYKGKSWVVESPLIGAFNAMNLLAAQAVG 331

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +G++    +  L+    VPGR E V  N +G  I+VDYAHT ++LE +   ++++   
Sbjct: 332 LQLGLNCKD-MCVLKDFPGVPGRLERV-INDQGLDIFVDYAHTPDALENVQHTLKSLDFK 389

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
           R+I VFGCGGDRD+ KRP+M K     AD+A++T DNPRSE PE I  +   G+      
Sbjct: 390 RLITVFGCGGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMDDARPGLARAAVV 449

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +E  +R  AI  A+  +   DVL++AGKGHE    +  G      D +     +G
Sbjct: 450 LEHPDRQTAITMAVAGMQPGDVLLIAGKGHEDYQQIA-GTTIHFSDKEAALRAIG 503


>gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
 gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
          Length = 499

 Score =  296 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 152/490 (31%), Positives = 234/490 (47%), Gaps = 34/490 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              QW  +     S DSR ++ G IF+A+       K     F   A+A GA A++  + 
Sbjct: 13  IDAQWPRQPFYGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA
Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDA 238

Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ++  ++K A N   +      S+       ++  +          +  +   F    PL 
Sbjct: 239 HADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFHLVSQQGSFAVESPLL 298

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT +
Sbjct: 299 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 356

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+
Sbjct: 357 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I A++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +   
Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 475

Query: 484 VDCDIIREIL 493
            D   +R  +
Sbjct: 476 DDVVEVRSAI 485


>gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 485

 Score =  296 bits (756), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 158/469 (33%), Positives = 247/469 (52%), Gaps = 19/469 (4%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           S  + AG +FVA+ G + DG  FIP A+A+GA  IV +    L + +        ++  D
Sbjct: 25  SGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVAAPGVRLPEGATAR-----LVTHD 79

Query: 97  NTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153
           + R+ L   A   +G   H   ++ VTGT+GK++++  ++Q+   SG     +G  S   
Sbjct: 80  DPRQALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQLFGGSGRKVGVLGTVSYRW 139

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
             F+ D  LTTP  + L + L+ +   GV    +E SSH LDQ R+ G+   A   TNL 
Sbjct: 140 PGFSMDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSSHALDQQRVAGLAYDAAVLTNLT 199

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+DYH+  + YF AK RLF EL  +    ++  +D Y   +++   +AG  VL  G +
Sbjct: 200 QDHLDYHKDMETYFQAKARLFRELPKEGKAWVVNYEDPYGLRLLREGLSAGRSVLGYGLE 259

Query: 274 GKFIHLKKVCAIHNKQQVT-----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              + +  + A             +  EG+ F+ + PL G     N L A G+   +G+ 
Sbjct: 260 TPPVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSPLVGRHNAMNLLTAMGVGFKLGLR 319

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               ++ L     V GR E V TN  G  ++VDYAHT ++L  +L  ++ +   R++ VF
Sbjct: 320 -ESDMQALAGFTGVSGRLERV-TNPHGLNVFVDYAHTPDALVNVLSAVKALGVRRLVCVF 377

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNR 445
           GCGG+RD+ KRP+MG+     AD+A++T DNPR EDP  I  ++   + G    + + +R
Sbjct: 378 GCGGNRDRAKRPLMGQAVCRHADVAVLTSDNPRHEDPLAIIEDVKPGLSGCARVVIEPDR 437

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +AI  A+E L  +D LVVAGKGHE    + +  K    D  ++RE+LG
Sbjct: 438 RKAIALALEGLTAEDALVVAGKGHEPYQQIGD-VKHPFSDQQVVRELLG 485


>gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 514

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 135/503 (26%), Positives = 237/503 (47%), Gaps = 22/503 (4%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +L++ + I P +   + +IN +S +S+ +Q G +F+ + G   DG  F  +AI  GA
Sbjct: 5   KLHKLLDLVGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           EA ++ SA + +   +  R    ++  DN         +  + +    +  + VTGT+GK
Sbjct: 65  EAAIIGSA-AKERIGSIDRERILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++ G  +   G   +    F++    TT     L K L+          
Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR-LFEELLPKESPA 244
            +E SSH + Q R+ G +  A  FTNL +DH+DYH   ++YF  K +  F   L ++   
Sbjct: 183 ILEVSSHSIAQKRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGI 242

Query: 245 IIYADDAYSKEVMKRAHNAG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   D +    +                 S      F  +       +          +
Sbjct: 243 SVLNHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPRE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355
                 PL GEF + NA+ A  +   +      + + ++     PGR E +  +      
Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDSDVSR 362

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD+ KRP+MG IA +L+D  
Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCEGKLITVFGCGGDRDRSKRPLMGSIAEELSDQL 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE
Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIILIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ + +     D  I  ++L
Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504


>gi|313905225|ref|ZP_07838593.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
 gi|313469978|gb|EFR65312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
          Length = 496

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 136/503 (27%), Positives = 229/503 (45%), Gaps = 30/503 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+ L+     E++            R+I  V  DSR    G +FV I G   DGH F P
Sbjct: 4   NLKTLLQGLEYEIL-------QGDENREIESVIYDSRKAAEGCLFVCIPGAVVDGHSFAP 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           +  ++GA A++V +A         + +   ++ V+N+R+ L+L ++  +    +    + 
Sbjct: 57  EVASKGAAALIVETAVD-------VPAGVTVVKVENSRRALALISAEWFDHPAKKLKTIG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT GK++ +  VQ I   +G     IG   TI       +  TTP    + +  + + 
Sbjct: 110 ITGTKGKTTTSYMVQSILNAAGHKCGLIGTIETITGKRVIPSPNTTPISYLVNEYFAEMV 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+  V +E SS  L   R+ GI    G FTNLG+DHI      +          ++ L
Sbjct: 170 EAGLDSVVMEVSSQALKYDRVTGIHFDFGIFTNLGQDHIGP---NEHEDFEDYLASKKKL 226

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +    I   D    + +               +   +       +     + I  + +
Sbjct: 227 FDQCTIGIVNRDDKLFDRIVEGAACSKLETYGFAEEASLRATDAMMLCKPGYLGIRYQTE 286

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +      +PG+F VYN+L A  +C   G+    +++ L +  V  GR E V  +   
Sbjct: 287 GLVNIPVEVDIPGKFTVYNSLAAIAVCHHFGVTEEEIMKALPQARV-KGRVEMVKVSD-K 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + +LE +L  +R     R++ +FGCGG+RD+ +R  MG+++  +AD  I+
Sbjct: 345 FTLMIDYAHNAMALESLLSTLREYHPARLVCLFGCGGNRDRERRFSMGEVSGKMADFTII 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P+ I  +I+ GI      +    +R EAI  AI      D++V+AGKGHE 
Sbjct: 405 TSDNPRFEEPQAIIDDIVTGIKKTDGHYTTIVDRKEAIAWAIHNGEPGDIIVLAGKGHED 464

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             I+ + +K    +  +I EIL 
Sbjct: 465 YQIIKD-KKYPMDERVLIAEILE 486


>gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 511

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 138/503 (27%), Positives = 242/503 (48%), Gaps = 22/503 (4%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +L++ + I P +   + KIN +S +S+ +Q G +F+ + G   DG  +  +AI  GA
Sbjct: 5   KLHKLLDLVGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           EA ++ SA + Q   +  R    ++  DN         +  + +    +  + VTGT+GK
Sbjct: 65  EAAIIGSA-AKQKIGSIDRKRILVIE-DNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++ G  +   G   +    F++    TT     L K L+          
Sbjct: 123 TTITFLLEYLLKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLFEELLPKESP 243
            +E SSH + Q+R+ G +  A  FTNL +DH+DYH   ++YF    K+     L  K+  
Sbjct: 183 ILEVSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGI 242

Query: 244 AIIYADDAYSKEV-----MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +++  DD +  ++        +  +     S   +  F  +       +          +
Sbjct: 243 SVLNIDDPWISKLSFDLEKGSSLVSTKITDSEFEKDDFFFVTDKKFTESGSTCIFHTPRE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--- 355
                 PL GEF + NA+ A  +   +      + + ++     PGR E +  ++     
Sbjct: 303 KIKLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNDDVSS 362

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + L+ +LK+I+ +  G++I VFGCGGDRD  KRP+MG IA + +D  
Sbjct: 363 LLPTLIVDYAHTPDGLKKVLKSIKKLCEGKLITVFGCGGDRDCSKRPLMGSIAAEFSDHL 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPRSEDP+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE
Sbjct: 423 FITSDNPRSEDPQKIVNDILMGIEKRDQITIEIDRFKAINESIKFANKEDIVLIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ +       D  I  ++L
Sbjct: 483 DYQILNDKVID-FDDRKIAYKLL 504


>gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
 gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
          Length = 530

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 156/533 (29%), Positives = 246/533 (46%), Gaps = 69/533 (12%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
                +++  +  +S +S+ ++   IF AI G   DG+ FI + + Q    ++  +  + 
Sbjct: 4   NLKQLFQKHNVKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQAVALVITDNKKNT 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                    +  ++ V++ +  L       Y K P+N++AVTGT+GKSSV S++ Q    
Sbjct: 64  I-------IDDKVIYVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSL 116

Query: 140 SGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            G  +  IG          +       LTT   +   K    L+   + +++ EASSHGL
Sbjct: 117 LGKKAASIGTIGVEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENNIEYLAFEASSHGL 176

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS- 253
           +Q RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L K +    +  D    
Sbjct: 177 NQARLGEIKVNTACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLFKPAYREEFKGDTEHS 236

Query: 254 -----------------------------------------------KEVMKRAHNAGCR 266
                                                           E +K        
Sbjct: 237 TTAYILVREDASTGSTSKLLLEAKFGKMSTEYLLQGGLAILNSDIAEIEFVKDYLRNHNI 296

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   + + K+      Q +      ++  F   + G FQ  N L+AA     IG
Sbjct: 297 KFITVGKKGDVQITKINGSLKAQNINFIFNNRECSFNTSIIGSFQASNLLIAALSIHYIG 356

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
            D   ++E L ++  V GR E +G       I+VDY+HT ++LE  L  ++ +     R+
Sbjct: 357 FDFNKIIEILTQVKPVKGRMERIG----NTNIFVDYSHTPDALEKALTELKNVKLRDSRL 412

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442
            VVFGCGG+RD+ KR +MG+IA  LAD  I+TDDNPR EDP+ IRAEII GI    + E 
Sbjct: 413 NVVFGCGGNRDKTKRSLMGQIAARLADNVIITDDNPRHEDPKLIRAEIISGIEKADYTEI 472

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            NR EAI+  I  L + D+L++AGKGHE   I+ + +K    D +I+R+++ L
Sbjct: 473 ANREEAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEIVRKLMSL 524


>gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
 gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
          Length = 487

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 159/466 (34%), Positives = 245/466 (52%), Gaps = 16/466 (3%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           S  + +G +FVA  G  EDG  FIP A+A+GA  IV     +L + +        ++ VD
Sbjct: 28  SAKVVSGGVFVAASGTAEDGARFIPDALARGATVIVAGPGIALPEGAKAA-----LVTVD 82

Query: 97  NTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
             RK L L A+   G  +    ++ VTGT+GK++V+  ++++   +G     +G  +   
Sbjct: 83  EPRKALGLLAAARCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGKKVGVLGTVAYRW 142

Query: 155 SFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +D  LTTP  + + ++L+ +++ G     +EASSH LDQ RL G+   AG FTNL 
Sbjct: 143 PGVTRDASLTTPDCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAGLSFAAGVFTNLT 202

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+DYH+  + YF AK +LF E LP  + A++  DD +   ++K    A    L+    
Sbjct: 203 QDHLDYHKDMETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVGYGLTKAPA 262

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           G    L      H++    +     D  F+   P+PG     N L A G  + +G+    
Sbjct: 263 GFARLLVGGIRSHDRDGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALTLGLPYET 322

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
                +  H  PGR E +  N+ G  ++VDYAHT ++LE +L   R  T+GR+  VFGCG
Sbjct: 323 FDALADC-HGAPGRLERIP-NASGLTVFVDYAHTPDALENVLGAAREFTAGRLFAVFGCG 380

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEA 448
           GDRD+ KRP M +    LAD+A++T DNPR E P  I  +   G+      I + +R  A
Sbjct: 381 GDRDRTKRPRMAEAVSRLADVAVLTSDNPRHEAPLAIIEDAKPGLAKARKVIIEPDRRRA 440

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           I  A++ +  +DVLV+AGKGHE+   + +  K    D  ++RE+ G
Sbjct: 441 IALALDAMRPEDVLVIAGKGHESYQQIGD-VKHPFSDAAVVRELTG 485


>gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
          Length = 522

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 153/488 (31%), Positives = 224/488 (45%), Gaps = 33/488 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ DSR +Q G +F A+ G    G  ++  A+  GA A++   A +     + I   
Sbjct: 39  ICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGAVAVLTDPAGA-----SLINRE 93

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+L+  + RK L   A+ +YG        L VTGT+GK++   F+    + +G  +  +
Sbjct: 94  VPLLICADPRKTLGPVAAAIYGHPARALVTLGVTGTNGKTTTVFFLDAGLRAAGHRTGLL 153

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T        +  TTP    +   L+ +   G+T  ++E SSH L  HR+DG     
Sbjct: 154 GTVMTRLGERTVPSARTTPEAPDIQALLARMRDDGITAAAMEVSSHALALHRVDGTGFAC 213

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL  DH+D+H   + YF AK RLF         A+I  DD Y + +          
Sbjct: 214 VGFTNLSHDHLDFHGDMENYFAAKARLFRP--DFAPKAVIVVDDEYGRRLADTAPIAVRT 271

Query: 260 -----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                 H    R                      Q  T++    + +    LPG F + N
Sbjct: 272 VSGRPEHLPPDRRPDWRVVAVRAAAAVSPTRPAGQVATVAGPIGEVELSLQLPGRFNLTN 331

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL+A  + + +GI        +  L  VPGR E V        + VDYAHT  ++  + +
Sbjct: 332 ALLALAILVEVGIPVEAARAGIGDLAGVPGRLELVDAGQ-PFAVLVDYAHTPEAVATVAR 390

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R    GR+I+V GCGGDRD  KRP MG  A +LAD+AI T DNPRSEDPE+I A ++ 
Sbjct: 391 EVRP-DRGRLIIVIGCGGDRDPSKRPAMGAAAAELADLAIFTSDNPRSEDPEEIVAAMLT 449

Query: 435 GIPGFI--------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           G+P            + +R EAI+ AI+     DV+++AGKGHE    +  G      D 
Sbjct: 450 GVPAVTADRRAEIRVELDRHEAIKDAIQAARPGDVVLIAGKGHEQGQEIG-GVVHPFDDR 508

Query: 487 DIIREILG 494
              R+ L 
Sbjct: 509 LAARDALR 516


>gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
 gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB056]
 gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB058]
 gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB059]
 gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
          Length = 499

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 152/490 (31%), Positives = 236/490 (48%), Gaps = 34/490 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              QW ++  +  S DSR ++ G IF+A+       K     F   A+A GA A++  + 
Sbjct: 13  IDAQWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVCSDVRQRMGDWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA
Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDA 238

Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ++  ++K A N   +      S+       ++  +          +  +   F    PL 
Sbjct: 239 HADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLL 298

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT +
Sbjct: 299 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 356

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+
Sbjct: 357 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I A++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +   
Sbjct: 417 IFADMKQGINFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 475

Query: 484 VDCDIIREIL 493
            D   +R  +
Sbjct: 476 DDVVEVRSAI 485


>gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 810

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 145/478 (30%), Positives = 218/478 (45%), Gaps = 18/478 (3%)

Query: 30  INE---VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           I+    + +DSR IQ   IF+A  G   DG L+I  AI  GA  +      + Q      
Sbjct: 20  ISGSQTLHADSRKIQPNDIFIACQGEYADGRLYIQSAIENGASFVFWEDDGTFQWQPEWA 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQ--RSGL 142
            SN PI    + ++   + A+ +Y       NI  VTGT+GK+S+  ++ Q      +  
Sbjct: 80  VSNQPI---SDLKQCAGILANAVYQNSTDSLNIFGVTGTNGKTSITQWIAQAIDILENKK 136

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           S   IG          Q+   TTP P+ +   L      G  H+++E SSHGL Q+R++G
Sbjct: 137 SCAIIGTVGNGFFGELQETTHTTPDPVSVQTLLRQFKQLGANHIAMEVSSHGLHQYRVNG 196

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKR 259
           +      FTNL RDH+DYH +   Y   K RLF     + +      +       ++ ++
Sbjct: 197 VPFKTAIFTNLTRDHLDYHNSMAEYGATKARLFHWQGLENAIINSDDEFGSKLILQLKQQ 256

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             +          +   I + +  A     ++ +     +      L G F   N   A 
Sbjct: 257 YADNLNIYSYGFNENADIRITEFIANTQGMKIGLQTPWGNGTTQTRLLGRFNAQNFAAAI 316

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G   A G +    L  L ++    GR +    N     + VDYAHT ++LE  L  +R I
Sbjct: 317 GALCASGFEFQAALNALSQIRPATGRMD-CIINENKPLVVVDYAHTPDALEKALTTLREI 375

Query: 380 T--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                ++  VFGCGG+RD GKRP+MG +A   +D  IVT DNPR EDP+ I A+I+  +P
Sbjct: 376 QSPESKLWCVFGCGGNRDSGKRPLMGAVAAQHSDRPIVTSDNPRMEDPQAIIADILPAVP 435

Query: 438 G-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              + + +R  AI   I     QD++++AGKGHET   V  G K    D ++    LG
Sbjct: 436 NAALVQVDRQTAIEQTIAQAAPQDIVLIAGKGHETYQDVQ-GVKHHFSDFEVAENALG 492


>gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 492

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 218/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYD--AIKSRLFYWQDLQHAVINIDDEYGAELVCRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YGYGFSERADIRITDFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P       
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+      D++++AGKGHE    V  G K    D ++  + L
Sbjct: 440 DRAAAIRYAVGRAAVNDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488


>gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
 gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
          Length = 1084

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 158/510 (30%), Positives = 237/510 (46%), Gaps = 41/510 (8%)

Query: 1    MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
            MKL  L+            +  +   +R I  ++ DSR ++ G +F A+ G K DG    
Sbjct: 594  MKLDALLSHSAI-------VKVVGPTDRDITHLTYDSRRVKPGTLFFALKGEKVDG---- 642

Query: 61   PQAIAQGAEAIVVSSAYSLQDF--------SATIRSNTPILVVDNTRKFLSLFASRLYGK 112
                         +   +            +AT R+    +VV N R  ++ FA+  Y  
Sbjct: 643  ------------TAFIDAAIAAGAEAIVTENATFRTRATNIVVANARNTMADFAAAFYQN 690

Query: 113  HPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIY 169
                  I  VTGT+GK++ A  ++ IC+ + L    +G     I         TTP  + 
Sbjct: 691  PARALKIAGVTGTNGKTTTAFLIKHICEAAQLRCGLLGTVRYEIGDRVLPASRTTPESLD 750

Query: 170  LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            + + L  + S G    ++E SSH L Q R+  ++  A  FTNL +DH+DYH+T +AYF A
Sbjct: 751  VHEMLWQMRSAGCKACAMEVSSHALVQARVRDVEFDAAIFTNLTQDHLDYHKTMEAYFEA 810

Query: 230  KMRLFEE---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            K R+F E      K+  AII  DD Y  +++ R   A                  V    
Sbjct: 811  KARMFSELAAQKKKQGKAIINLDDRYGAQLVTRFGKAIPITTYGLGVHADFRASNVRIDF 870

Query: 287  NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +     +   G+ +    PL G+F VYN+L A     A+GI+    +  L     VPGR 
Sbjct: 871  HGTSYQLDAGGRSYLVRLPLIGQFNVYNSLAAVAAANAMGIEVRNCVLALANATAVPGRL 930

Query: 347  EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            E V    +  R++VDYAHT ++L  ++K  R +   R+IVVFGCGG+RD+ KRP MG + 
Sbjct: 931  EAVPAQRQ-FRVFVDYAHTDDALLNVIKTCRELNPARLIVVFGCGGNRDKTKRPRMGAVV 989

Query: 407  LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD AIVT DNPR E+P  I  +I  G+    +    +R EAI  A+ M   +D++++
Sbjct: 990  DQHADHAIVTSDNPRKEEPLAIIEDIKPGMRRGNYEVIVDRREAIFKAVAMAQPRDIILI 1049

Query: 465  AGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            AGKGHE      +       D  + R+ L 
Sbjct: 1050 AGKGHENYQEFAD-RTMPFDDVAVARQALE 1078


>gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium sp. P08]
          Length = 529

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 148/494 (29%), Positives = 230/494 (46%), Gaps = 23/494 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  L           I  ++ DSR ++ G ++V + G    G  F   A   GA A++
Sbjct: 29  DLMASLDGCRADGNGPAITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVL 88

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVA 130
                +       + +  P+++VD+ R  +++ A+R++G       +  +TGT+GK++ A
Sbjct: 89  TDEHGA----KLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTA 144

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVS 186
             V+   + +G     IG         +       +TTP    L    + +  +G + V 
Sbjct: 145 FLVEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVV 204

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+DG      +FTNLGRDH+D+H+T   YF AK RLF   L +      
Sbjct: 205 MEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGVIN- 263

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD   +++++R    G R ++          +    A        ++    +      
Sbjct: 264 -VDDPRGRQLIERMQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELS 322

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPGEF V NA +A  +    G+    V + L    V PGR E V   +      VD+AHT
Sbjct: 323 LPGEFNVRNAAMALAMLETAGLAFDDVADGLCSAQV-PGRMERVDLGADAPTALVDFAHT 381

Query: 366 SNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++   L   R++  SGR+I V G GGDRD  KR  MG++A + ADI ++TDDNPR+ED
Sbjct: 382 PQAIASALDAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTED 441

Query: 425 PEKIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           P  IRA ++ G        I   +   R EAI  A+ M    DV+ V GKGHET   + +
Sbjct: 442 PAVIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHETGQHIGS 501

Query: 478 GEKKMSVDCDIIRE 491
            E     D ++IR 
Sbjct: 502 -EVLPFDDREVIRN 514


>gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 463

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 143/466 (30%), Positives = 224/466 (48%), Gaps = 23/466 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ +S+ +    +F AI G  +DGH FI +AI +GA  +V    +              
Sbjct: 12  NITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPFKDFKN--------- 62

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           I+VV++++K         +    E   ++ VTGT+GK+S    +  I  +          
Sbjct: 63  IIVVEDSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAILSQKYKGGIIGTM 122

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              + +   +   TTP        LS    +G+  V+ E SSH LDQ R+   K  A  F
Sbjct: 123 YYKLGNEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSHALDQLRVYPTKFFATVF 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH+T + YFNAK RLF++   +    ++  DD Y   + +   +       
Sbjct: 183 TNLTQDHLDYHKTMENYFNAKRRLFKD--YEYEVCVLNIDDDYGSMLYEEFKDKAITYGY 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  I                  + K ++    L G+FQ YN   +  L   +G D 
Sbjct: 241 SENAHLKIDYFDQENKVFG----FYYKNKHYEIKTNLKGDFQAYNMGASILLGFYMGFDI 296

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   +  L  +PGRFE       G ++ +DYAHT ++LE +LK  + IT  R+I VFG
Sbjct: 297 EEIQRGILSLSSIPGRFE--TIELNGVKVVIDYAHTPDALEKLLKTAKAITKNRLICVFG 354

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
            GG+RD+ KRP MGKIA +L+DI+I+T DNPR E+   I  +I+ GI    G + + +R 
Sbjct: 355 AGGNRDKTKRPKMGKIASELSDISIITSDNPRFEESMDIIKDILEGIDPSKGPMVEEDRK 414

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +AI  A+++    DV+V+AGKGHE    +  G K    D + + + 
Sbjct: 415 KAIALALDIALDGDVVVIAGKGHEDYQEIK-GVKYHFSDKEEVLKY 459


>gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
 gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
          Length = 508

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 149/506 (29%), Positives = 243/506 (48%), Gaps = 18/506 (3%)

Query: 1   MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +++I       +++      +    +I  ++ +S+ I+  +IFVAI G K+DGH +
Sbjct: 1   MKLFKEIIKGYK---VSKEKQLTKECLNIEIRGIAYNSKLIKNKYIFVAIKGLKDDGHKY 57

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPEN- 116
           I  AI   A  I+  ++            +     + V N R+ L+  +++ + +  +  
Sbjct: 58  IESAINNKAAIIIYDNSADKNFIKELEDKHTYVYFIAVKNPRECLAYISAKFFDEPTKKI 117

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174
             +A+TGT+GK++    ++ + + +   +  IG   + I        LTTP  I L    
Sbjct: 118 NTIAITGTNGKTTTTYLLKSVLEANKNKTALIGTIKNMIGKTEIKTNLTTPESIDLENIF 177

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---M 231
                + V+H+ +EASS  L   R D +      FTN+  DH+DYH   Q Y  AK    
Sbjct: 178 DKALKKEVSHIVMEASSQALAMDRCDYLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLF 237

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L +E    +  AI+  D    K++       G ++++ G   K  +  K+ ++++K   
Sbjct: 238 SLLKESSKNKKLAIVNIDTDNFKQISNYIKKLGIKMVTYGLNEKADYYGKIISLNSKNTE 297

Query: 292 TISVEGKDFDFLFP--LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   F       + G F + N+L          +D    ++ + K+ V  GRFE V
Sbjct: 298 YEFYSKGKFISKVKLSMLGRFNILNSLSVLAYVSEYKLDIEKSIKAMRKVQV-AGRFEIV 356

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                     VDY+HT +SLE ILK  R +   R+IVVFGCGGDRD+ KRPIM  IA   
Sbjct: 357 TKEKHPFIAAVDYSHTPDSLENILKEARKLNPKRVIVVFGCGGDRDRKKRPIMASIAEKY 416

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +DI+I+T DN R+ED  +I  +I  G     + +  +R EAI  AI+   + D++++AGK
Sbjct: 417 SDISILTADNQRTEDINQIMNDIEKGFKNKDYKKIIDRKEAIFEAIKEAKENDIVIIAGK 476

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET  I  + +     D +I RE L
Sbjct: 477 GHETYQIFPD-KTIHFDDREIAREAL 501


>gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
 gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
          Length = 495

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 168/502 (33%), Positives = 250/502 (49%), Gaps = 25/502 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL+   +  +            +  I  ++ D+R I  G +FVA+ G+  D   FIP 
Sbjct: 6   LKDLLAPWYDAI-----------PDTLITGLTLDNRQITPGDVFVAVQGHSLDARRFIPA 54

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI  GA A++         F  T++   P++   + +  LS  A R Y    +   ++ V
Sbjct: 55  AIEAGAAAVIADDGDIHGQFDVTMQGGVPVVAFPHLKSTLSDIAGRFYQSPSQGMTVIGV 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V+  V Q     G  +  +G T             TT S + + + L+  + 
Sbjct: 115 TGTNGKTTVSQLVAQWIDLLGGKAAVMGTTGNGFLDALAPALNTTGSALDIQQQLAAFNQ 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           QG THV++E SSHGL Q R+  +   A  FTNL RDH+DYH T +AY  AK+RLF     
Sbjct: 175 QGATHVAMEVSSHGLVQDRVKAVAFDAAIFTNLSRDHLDYHGTMEAYAEAKLRLFTHYGS 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISV 295
             S     ADD      +     A    +       +QG+ + L  V    +   +T   
Sbjct: 235 PVSVIN--ADDPVGMRWLGSMPEAVAVSMSEKAVHQHQGRKLWLTAVDYATSGVSITFDS 292

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              + +F  PL GEF V N LV+    +A+G + A +L    +L  V GR E      + 
Sbjct: 293 SWGEGEFTTPLVGEFNVMNLLVSLATLLALGYEKAALLASATQLQAVVGRMEVFHRPDKP 352

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               VDYAHT ++LE  L  +R    G++  +FGCGGDRD GKRP+M  IA  LADI I+
Sbjct: 353 MC-VVDYAHTPDALEKALHALRRHCDGKLWCIFGCGGDRDIGKRPMMADIAEKLADIVIL 411

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPRSE P+ I A+++ G+      I   +R +A   A+E  ++QDV+++AGKGHE  
Sbjct: 412 TDDNPRSESPQAIVADMLRGMTDPDKAIILHDRAQACSYALENASEQDVILIAGKGHEDY 471

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            ++ +G      D D +R +L 
Sbjct: 472 QVLASGTVHY-SDRDTVRRLLE 492


>gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
 gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
          Length = 500

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 146/491 (29%), Positives = 230/491 (46%), Gaps = 35/491 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAI-------VGNKEDGHLFIPQAIAQGAEAIVV 73
              QW ++  +  S DSR ++ G IF+A+                F   A+A GA A++ 
Sbjct: 13  IDAQWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTF----FAEAALANGALAVIS 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSV 129
            +   + +            V  + R+ +  +  R   +     P  I+AVTGT+GK+++
Sbjct: 69  ETELGVANE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTI 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  + ++          +G T          +  TT   + L  AL   + QG T  S+E
Sbjct: 119 SRLIAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLE 178

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+    K +   +  
Sbjct: 179 ASSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDD 238

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             A       + + A  ++L+          ++  +          +  +   F    PL
Sbjct: 239 AHADLMIESAQNNPAQPKILTYSLTQNTADYYITDLNYSLAGATFNLVSQQGSFAVESPL 298

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT 
Sbjct: 299 LGHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE
Sbjct: 357 DALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPE 416

Query: 427 KIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           +I A++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +  
Sbjct: 417 QIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHW 475

Query: 483 SVDCDIIREIL 493
             D   +R  +
Sbjct: 476 FDDVVEVRSAI 486


>gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
 gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
          Length = 491

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 148/500 (29%), Positives = 223/500 (44%), Gaps = 31/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L                    + +I  +  DSR +    IF  I G   DGH ++
Sbjct: 1   MKLSALF---------------DNAPDIEIENLMVDSRDVLPNSIFFCIKGMIHDGHRYV 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI  GA  +V S      +      +N   + V +    L+  A+  YG   + ++  
Sbjct: 46  NAAIKNGAVCVVHSEDIKRNN------ANVVYIKVRDVTAALNQVAACFYGYPSKKMVVY 99

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTGT+GKSS+A  ++ +        +    +           LTTP  + L + L  ++
Sbjct: 100 GVTGTNGKSSIACMIRNLLNPVYACGYIGTISIEYGDTKLPPLLTTPDIVPLQQILHDMA 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+   ++E SS GL+QHR D + +    FTNL  DH+DYH T + YF AK RLF++ L
Sbjct: 160 QAGMKACALEISSIGLEQHRTDSVDVDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQ-L 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  AI   DD +   ++            +         K +    +K   T+  +G 
Sbjct: 219 KPDGTAITNKDDPHGMAIVADCPARVVTYGVLEKADYE--AKDIQLNADKTIFTLVHDGS 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           ++     L   F +YN L         G+    +LE L  +  + GR E +    +   I
Sbjct: 277 EYPVQTNLVAMFNLYNLLAVIAALHEGGLPIEQILEQLNTIPQIEGRMERI-EEGQPFNI 335

Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VD+AHT + LE I K    IT    RII VFG  G RD  KRP+ G++A    D+ I+T
Sbjct: 336 IVDFAHTPDGLEQIFKFASAITPKEKRIISVFGSAGKRDTKKRPVFGQLADKYCDLIILT 395

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +D+PR EDP +I  EI  GI     I   +R +AIR A+E+ N  D +++ GKG ET   
Sbjct: 396 EDDPRDEDPIQIAEEIAAGIQKTNRIIIESRYDAIRQAVEVANVGDTILILGKGDETFIY 455

Query: 475 VTNGEKKMSVDCDIIREILG 494
              G +    D   +R+ L 
Sbjct: 456 REFGREPWMSDPAAVRDALR 475


>gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
 gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
          Length = 499

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 147/488 (30%), Positives = 228/488 (46%), Gaps = 30/488 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              QW ++  +  S DSR +Q+G IF+A+       K     F   A+A GA AI+  + 
Sbjct: 13  INAQWSQQPFHGFSLDSRKVQSGQIFIALTSYSQPEKT--RAFAESALANGALAIISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R         P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVCPDVRQRMGEWQERYLQHIDPVTPARIVAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 VAELISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF     K +   +  + A
Sbjct: 181 HGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFNSLKVAVINLDDEHA 240

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  + + A  ++L+          ++  +          +      F    PL G 
Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSSQGSFAVQSPLLGH 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N + A       G D   ++  + KL   PGR + +    R     VDYAHT ++L
Sbjct: 301 FNVENLIAALIAAEQAGFDLDALVAFVPKLIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I 
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIF 418

Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           A++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D
Sbjct: 419 ADMKQGINFSGHRMQEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477

Query: 486 CDIIREIL 493
              ++  +
Sbjct: 478 VVEVQSAI 485


>gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
          Length = 492

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 219/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +I  AIA GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYISAAIANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           AII  DD Y  E++   K+  +    
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCSDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YSYGFSGNADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAGCIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPFDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQNIINDILPAVPTPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D ++  + L
Sbjct: 440 DRAAAIRYAVERATANDIILIAGKGHENYQDVQ-GVKHHFSDFEVAEKAL 488


>gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 511

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 138/503 (27%), Positives = 236/503 (46%), Gaps = 22/503 (4%)

Query: 10  DFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +L++   I P     ++ IN +S +S+ +Q G +F+ + G   DG  F  +AI  GA
Sbjct: 5   KLHKLLDLAGIIPSSNLIDQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           EA ++  A   +  S  I     +++ DN         +  + +    +  + VTGT+GK
Sbjct: 65  EAAIIGPAAKQKIGS--IDRKRILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +++   ++ + ++ G  +   G   +    F++    TT     L K L+          
Sbjct: 123 TTITFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--P 243
            +E SSH + Q R+ G +  A  FTNL +DH+DYH   ++YF  K +LF      E    
Sbjct: 183 ILEVSSHSIAQKRISGCEFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNEKDGI 242

Query: 244 AIIYADDAYSKEVMKRAHNAG-----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +++  DD +  ++                 S      F  +       N          +
Sbjct: 243 SVLNHDDPWISKLSSDLEKRSSLVSTKITESEFKNHDFFFVTDKKFTENGSTCIFHTPKE 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-- 356
                 PL GEF + NA+ A  +   +      + + +      PGR E +  ++     
Sbjct: 303 KIQLFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDFSR 362

Query: 357 ---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + L+ +L++I+ +  G++I VFGCGGDRD GKRP+MG IA + +D  
Sbjct: 363 SLPTVIVDYAHTPDGLKKVLQSIKKLCKGKLITVFGCGGDRDLGKRPLMGSIAEEFSDQL 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            +T DNPRSE+P+KI  +I+ GI        + +R +AI  +I+  NK+D++++AGKGHE
Sbjct: 423 FITSDNPRSEEPQKIVNDILMGIKKRKKITIEIDRFKAINESIKFANKEDIVLIAGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I+ + +     D  I  ++L
Sbjct: 483 DYQILND-KVINFDDRKIAYKLL 504


>gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila psittaci RD1]
 gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila psittaci 6BC]
          Length = 483

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 231/502 (46%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++S         ++  ++ DSR++  G IF+A  G   DG+ F 
Sbjct: 1   MNLKELLHNTKAKIYGKISS-------VEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             AI  GA A+  S           I S+ P L         +  A++ YG   +   ++
Sbjct: 54  HLAIENGAIAVASSIYNPFLPVVQIISSDLPQLE--------ADLAAKYYGHPSQKLCVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  ++ +       +  IG    I  +    +  TTP    L K L+ +
Sbjct: 106 GITGTNGKTTVSHLIKFLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               ++   +E SS GL  +RL  +    G  TN+  DH+D+H + + Y  AK++LF  L
Sbjct: 166 VKSNLSAAVMEVSSIGLAVNRLANVHFDVGVLTNITLDHLDFHSSFEEYKQAKLKLFSML 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +       ++ +          +     Q        +          +  +G
Sbjct: 226 PSSGLAVVNNDLHYAAQFIEA---TQAQPITYGIEQHADYRASNLRFSPFGTDFDLLYKG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + F    PL G+  +YN L A  +     G D   ++  +  +    GR E     S   
Sbjct: 283 ETFACSSPLIGQHNIYNVLAAISVAHQRLGCDLQQLISAVANVETPRGRLE--PVFSGPC 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            IY+DYAHT ++L+ + K ++ +    GR+IVVFGCGGDRDQ KR IM ++       A+
Sbjct: 341 PIYIDYAHTPDALDNVCKTLQALLPQDGRLIVVFGCGGDRDQSKRKIMAQVVEKYG-FAV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR EDPE I  EI  G     F  + +R +AI  A+ + + +D+++VAGKGHET 
Sbjct: 400 VTTDNPRGEDPEMIINEICSGFFKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETY 459

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I  +       D +I+ E+L 
Sbjct: 460 QIFKHQTIA-FDDKEIVLEVLS 480


>gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 499

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 144/488 (29%), Positives = 227/488 (46%), Gaps = 30/488 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              +W ++     S DSR + +G IF+A+       K     F   A+A GA A++  + 
Sbjct: 13  IDAKWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAVISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVCSDVRQRMGEWQERYLQRIDLVVPVRIIAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 VAELISFQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF     K +   +  + A
Sbjct: 181 HGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAIINLDDEHA 240

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  + + A  ++L+          ++  +          +      F    PL G 
Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYITDLSYSLVGATFNLVSPQGSFAVQSPLLGH 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N + A       G D   ++  + +L   PGR + +    R     VDYAHT ++L
Sbjct: 301 FNVENLVAALIATEQAGFDLKALVAFVPELIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I 
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIF 418

Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           A++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D
Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477

Query: 486 CDIIREIL 493
              +R  +
Sbjct: 478 VVEVRSAI 485


>gi|323487025|ref|ZP_08092337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
 gi|323399673|gb|EGA92059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
          Length = 487

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 147/500 (29%), Positives = 233/500 (46%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++ + +   EL+           + ++++V  DSR   AG +FV + G   D H FI
Sbjct: 1   MKLREWLKEMEYELL-------QGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P  I +GA+ +V   A        T+     +L V N R  LSL ++  +G     +  +
Sbjct: 54  PDVIQKGAKVLVTEEAV-------TVPEEITVLRVGNGRNALSLLSAARFGYPARKMTTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ I + +G  +  IG     I S       TTP    L +  + +
Sbjct: 107 GVTGTKGKTTTTYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG  ++ +E SS     HR+DGI      F N+  DHI     + A F   +   + L
Sbjct: 167 VEQGCRYMVMEVSSQSYLMHRVDGIFFDYSIFLNISNDHIG--PNEHASFEEYLYYKKLL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
           L      ++  DD + +E+++ A                    K    H+   +   +E 
Sbjct: 225 LQNSRVCLVNRDDGHYREIIEGAKAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +      +PG F VYNA+ AAG+C  +G+    V   LE + V  GR E V   S   
Sbjct: 285 DYESRLRVNVPGLFNVYNAMAAAGVCSCLGLSKERVAHALEHMQVD-GRMEIV-YKSAKC 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAH + S+E +L  +R     R++VVFGCGG+R + +R  MG+I   LAD++I+T
Sbjct: 343 TVIVDYAHNAVSMESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DN R E    I A+I  G+      FIE  +R EAI  ++    + D++ + GKGHE  
Sbjct: 403 ADNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQEGDIIAIIGKGHEDY 462

Query: 473 HIVTNGEKKMSVDCDIIREI 492
             +  G +   +D  +++E 
Sbjct: 463 QEIE-GVRHPFLDRTVVQEA 481


>gi|327404195|ref|YP_004345033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
 gi|327319703|gb|AEA44195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
          Length = 486

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 148/496 (29%), Positives = 235/496 (47%), Gaps = 27/496 (5%)

Query: 9   KDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   EL     I   +   +  ++ + SDSR   AG +F+A+ G + D H FI Q I +G
Sbjct: 2   KTVNELAKATEITQWIGPTDVVVSALVSDSRKALAGTLFIAVKGTQVDAHDFISQVIEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
              IV      + +       +  +LVV N+   L   A   Y        ++ VTGT+G
Sbjct: 62  CRVIVAERVIEVPE-------HVTVLVVPNSALALGELAHAFYDYPSRSLELVGVTGTNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  + +  +    G     +    + I      +  TTP  I L   L+ +  QG +H
Sbjct: 115 KTTTTTLLHDLYTELGYKVGLLSTVVNLIGKEVIPSTHTTPDQIALNALLADMVDQGCSH 174

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH + QHR+ G+    G+FTN+  DH+DYH T + Y  A  + F + L K++ A
Sbjct: 175 CFMEVSSHAISQHRIAGLVFKGGAFTNITHDHLDYHGTFKEY-IAAKKTFFDELKKDAFA 233

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ ADD     +++             +      + +           + +     +   
Sbjct: 234 LVNADDKNGMVMVQNTKAKVSTFGLKTHADFKAKVLENSFSG------LLLTINGIELWT 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+F  YN     G+   +G DS  VL  L KL  V GRF+F  + +      VDYAH
Sbjct: 288 RLIGDFNAYNIATVYGISQLLGSDSTEVLTVLSKLEAVDGRFQFTKSET-DITAVVDYAH 346

Query: 365 TSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++LE +LK I  I +     I V GCGGDRD  KRP M +IA +L++  I+T DNPR+
Sbjct: 347 TPDALENVLKTIENIRTRNEQVITVVGCGGDRDALKRPEMARIACELSNKVILTSDNPRT 406

Query: 423 EDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           EDP +I  ++  G+        +   +R +AI+TA+ +   +D++++AGKGHE    + N
Sbjct: 407 EDPAEILKQMEAGVGAHQSMKVLTILDRDQAIKTAVSLAQPKDIILIAGKGHEKYQDI-N 465

Query: 478 GEKKMSVDCDIIREIL 493
           G K    D D+++   
Sbjct: 466 GVKHPFDDFDVVKNYF 481


>gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 492

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 219/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP AIA GA  +        +          P 
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFE---WNPEWEVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSTIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    +  G K    D ++  + L
Sbjct: 440 DRATAIRYAVERAASSDIILIAGKGHENYQDMQ-GVKHHFSDFEVAEKAL 488


>gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
 gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
          Length = 492

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP AIA GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGVELAGRLKKDCPDLTV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YGYGFSEHADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I  + L
Sbjct: 440 DRAAAIRYAVERAASSDIILIAGKGHENYQDVQ-GVKHHFSDFEIAEKAL 488


>gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
 gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
          Length = 487

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 153/475 (32%), Positives = 235/475 (49%), Gaps = 16/475 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            +    V++DSR +  G +F+A  G   DG  +I QA+A GA A++  S    QDF    
Sbjct: 8   NQTFTAVTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDS----QDFVWNA 63

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 L V   +  ++  A+  Y        ++ VTGT+GK+SV+ ++ Q  Q  G  +
Sbjct: 64  AIKVSNLGVRELKSQVAQIAAEFYQYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKT 123

Query: 145 FQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             IG   +       +   +   TTP  I L K L+  ++QG   V +E SSHGLDQ R+
Sbjct: 124 AVIGTIGSGFADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGRV 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + I+     FTNL RDH+DYH T  AY  A  +      P    AI+ ADD + K++ + 
Sbjct: 184 NAIEFDFAVFTNLTRDHLDYHVTMDAY--ASAKQKLFDWPSLRTAIVNADDDFGKKMAES 241

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  +L+ G     +   ++    +   + +S           + G F  YN L   
Sbjct: 242 LRVNNKSLLTYGLLHGDVRADQLTLGPSGISMQVSTPQGAAVLNASVLGRFNAYNLLAVL 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +A  +     +  + ++  V GR +  G N +   + VDYAHT ++LE +L ++R  
Sbjct: 302 ATLLARQVPLNEAIAAIAQIKPVAGRMQQFGGNDKPL-VVVDYAHTPDALENVLVSLREQ 360

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           T G+++ VFGCGGDRD GKRP+MG IA   A   +VT DNPRSE+P +I   +++G+   
Sbjct: 361 TQGKLVCVFGCGGDRDAGKRPLMGAIAEKYAHHVVVTSDNPRSENPAEIIEHVVNGMTVL 420

Query: 440 -IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                +R  AI+ AI+  NK DV+++AGKGHE    V  G +    D  + +  L
Sbjct: 421 PSVAPDRAIAIQQAIKFANKDDVVLLAGKGHEDYQEVG-GVRAPFSDIAVAQAAL 474


>gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
 gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
          Length = 493

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 138/500 (27%), Positives = 229/500 (45%), Gaps = 26/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++D++ +     +N L +      E + N +SS+S+ IQ   +F+   G   D H  +
Sbjct: 1   MKIKDILRE-----LNSLILKVNCDEELEFNYISSNSKDIQENTLFICRKGTSFDSHNIV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                +GA   VV                 P + V ++R   S+ AS  Y K  E ++  
Sbjct: 56  DDLYKEGANVFVVEREIR----------KYPYIQVVDSRIAESIIASMFYSKPYEKLITF 105

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             TGT+GK++       I    G+     G   + I      +  TTPS I + + +   
Sbjct: 106 GVTGTNGKTTSVHLFHHIMHNFGIKGSISGTVVNDIMGDKFYHPNTTPSAIEIMRNMHKT 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SSH L Q+R++ I+      TN+ RDH+D+H+T + Y  AK  +   L
Sbjct: 166 LENGGKYYGMEVSSHALSQYRVESIRYDIVGITNITRDHLDFHETFENYKKAKFHILNLL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P     + +       + +K  +     V           + ++    +     +    
Sbjct: 226 KPNGIAVVNHEL----LQEVKNKNKNIKLVSFGVDSSSDYVIHEITTNWSGTFFKLDTPY 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
            +      L GE+  +N  +       IG D   V+  +     V GRFE +    + G 
Sbjct: 282 GEKKVASQLIGEYNAFNITLVVAALAEIGYDIDEVIASVATFRGVDGRFEIIPEAKKLGI 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I VD+AHT ++LE ++ ++R +T GR+I VFG GG  D GKRP+MG++    +DI+I+T
Sbjct: 342 EIVVDFAHTPDALEKVILSLRKLTKGRLITVFGAGGQSDIGKRPMMGEVVSKYSDISIIT 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            D+PR EDP KI  ++  G+      +   +R EAI TAI + N+ DV+++AG+GHE   
Sbjct: 402 TDDPRGEDPLKIIKDVEAGLVPGSLSLSIEDRKEAIDTAITLANRGDVILIAGRGHEPYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           +     K    D D+  +I+
Sbjct: 462 VFDENHKVPFKDRDVAIDII 481


>gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
          Length = 480

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 237/494 (47%), Gaps = 26/494 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++DL+         +         E ++ ++S D+R I+   IFVA  G   D H  I
Sbjct: 1   MKVKDLLKGV------EYFCKDKSLLEYEVADISFDNRDIKENSIFVAYKGVSYDTHNDI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILA 119
            + I              ++        + P +VV N R+ LS+ +   +   +  N + 
Sbjct: 55  NKLIN----------DSRIKVLVTEKEFDFPTIVVKNGRRALSIISKNFFIKNYEPNYIG 104

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ A  +  I + +G  + + G  +  I      +  TTPS     K L    
Sbjct: 105 VTGTNGKTTTAYLINHIVEFTGYKTARFGTINYKIDKELYPSTTTTPSTYEFYKMLGVAE 164

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 V +E SSH LDQ R+ GI      +TNL  DH+DYH+    YFN+K +LF E L
Sbjct: 165 KANCEFVVMEVSSHALDQDRVYGINFNYAIYTNLSGDHLDYHKDLDDYFNSKSKLFTEYL 224

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                     DD Y K+++    +      S         ++      +K  + +++ G+
Sbjct: 225 NGCGIVN--IDDEYGKKLLYLIKDNEILTYSFNNNKANCFVEHFDMNLDKTDIVLNLLGE 282

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F   L G+  +YN + A      +GID   +   ++    VPGR E +  N     I
Sbjct: 283 KIHFETSLVGKHNIYNLMAAILTAHHLGIDHDRITRAIKTFSNVPGRLEKLIYN--NIYI 340

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           ++DYAHT ++LE +L ++R     RII +FGCGGDRD+ KRP M K+A   +D+ +VT D
Sbjct: 341 FIDYAHTDDALENVLSSLRPFRKRRIITLFGCGGDRDKSKRPRMAKVAEKYSDLVMVTSD 400

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+EDPEKI   I+ G       + + +R EAI+ A++    +D++++AGKGHE   ++
Sbjct: 401 NPRNEDPEKIIDGILKGFGDKSKVVVEPDRREAIKLALKEAEPEDIVLIAGKGHEDYQLI 460

Query: 476 TNGEKKMSVDCDII 489
             G K    D + +
Sbjct: 461 K-GVKYHFDDKEEV 473


>gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 503

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 155/475 (32%), Positives = 237/475 (49%), Gaps = 14/475 (2%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRS 88
             +  DSR+I  G +FVA+ G+K DG L+I  AI +GA A+++ S    ++    +   +
Sbjct: 25  TGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDITISKKYSYHLN 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P++ V+   ++LS  A   Y       +++ VTGT+GK+++   + +  Q  G  S  
Sbjct: 85  KIPVVHVNYLPRYLSDIAGSFYNHPSRFLDLIGVTGTNGKTTITHLLARWVQLLGKKSAV 144

Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G            +  TT S I   K LS      +T V++E SSHGL+Q+R+D +   
Sbjct: 145 MGTLGNGMLNNMCLSNNTTCSSIDAQKILSQFVKDKITFVAMEVSSHGLNQYRVDALYFK 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAYSKEVMKRAHNA 263
           A  FTNL  DH+DYH     Y  +K RLF+EL  ++            +   + +     
Sbjct: 205 AAIFTNLSHDHLDYHGNVMQYSMSKWRLFDELCVEKYIINADDPVGCRWLYYLPQAIAVT 264

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R L   ++GK+I   KV    +   +T             L GEF V N L+A G  +
Sbjct: 265 ITRNLPFFWKGKWICALKVNYHIHGTDITFDSSWGHGVIHSQLLGEFNVSNLLLALGTLL 324

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
            +G   +L++    +L  V GR E    +     + VDYAHT ++LE +L +IR     G
Sbjct: 325 ILGYPLSLLVHTSSQLQPVAGRMEVFR-SHGYPTVIVDYAHTPDALEKVLISIRQFYYWG 383

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---- 438
           ++  VFGCGGDRD  KR +MG I    AD  I+T+DNPR+E+P+ I  +I  GI      
Sbjct: 384 QLWCVFGCGGDRDPSKRALMGCIVSRYADYIIITNDNPRTEEPQSIINDITRGITHRKKI 443

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                NR  AI+TAI   + +DV++++GKGHE   I+ N  +    D DI+   L
Sbjct: 444 IKIIQNRCCAIQTAILKASLEDVILISGKGHEKYQIIGNN-RIYHSDKDIVENFL 497


>gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
 gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
          Length = 482

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 143/472 (30%), Positives = 227/472 (48%), Gaps = 19/472 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR    G +FVA+ G+  DG  FI  A+A+GA  +V     +     A       +
Sbjct: 18  LCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRPESAGNCGEAE------V 71

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +   + R+ L L A   YG    P  ++ VTGT+GK++    +  +   +G  +  +G  
Sbjct: 72  VDCADPRQALGLLARARYGTASLPFPVVGVTGTNGKTTTTYLLDHLFASAGKKTGVLGTV 131

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           S       +D  +TTP  + +   L+ + + GV    +E SSH LDQ+R+ G+      F
Sbjct: 132 SYRWPGHHEDAPMTTPDCLDVHTMLADMRAAGVDMAFMEVSSHALDQNRVAGVGFGGAVF 191

Query: 210 TNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +NL +DH+DYH   + YF AK    L  +  P     +    D      +          
Sbjct: 192 SNLTQDHLDYHHDMETYFKAKAKLFLDGDGKPFADRVMAIGTDNPWGARLAGMAPEAIGF 251

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                     +L+          + +    EG++++F  PL G +   N L    + +  
Sbjct: 252 GLTASGASGRYLEGKVLSSTTAGLRLHARFEGREWEFTSPLVGNYNAENLLAVQAVALGF 311

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D        E    VPGR E +  N +   ++VDYAHT ++L  +L  +R     RI+
Sbjct: 312 GLDPEAFRC-FETFCGVPGRLERI-LNPQNLDVFVDYAHTPDALINVLNALRGAGFKRIV 369

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--- 442
            VFGCGG+RD+ KRP+MG+    L+D+A++T DNPR E+PE I A+++ G+ G  E    
Sbjct: 370 TVFGCGGNRDRAKRPLMGEAVARLSDVAVLTSDNPRHEEPEAIMADVMPGLSGAAEVFAD 429

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +R  AI   +E+L+  D L++AGKGHE+   + +  K    D   +REILG
Sbjct: 430 PDRRRAIEKGLELLHPGDALLIAGKGHESTQQIGD-VKHPFSDQQTVREILG 480


>gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
 gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
          Length = 508

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 148/506 (29%), Positives = 243/506 (48%), Gaps = 18/506 (3%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK  ++LI       +++ S    +    +I   + DSR I+  ++FVAI G K+DGH +
Sbjct: 1   MKYFKELIKNYK---VSKESQLTKECLNTEIKGAAYDSRLIKKNYLFVAIKGLKDDGHKY 57

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIR--SNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
           I  AI   A  I+  +    +          +   + V N R+ L+  +++L+ +  +  
Sbjct: 58  IESAINNKASIIIYDNTADKEFIKKLQDNHKDVHFVAVKNPRECLAYISAKLFYEPTKKI 117

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174
             + +TGT+GK++    ++ + + +   +  IG   + I        LTTP  I L    
Sbjct: 118 NTIGITGTNGKTTTTYLLKSVLEANKNKTTLIGTIKNMIGKTEIKTNLTTPESIDLESIF 177

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---M 231
                +G++H+ +E+SS  L  +R D +      FTN+  DH+DYH   Q Y  AK    
Sbjct: 178 DKSLKKGISHIVMESSSQALAMNRCDYLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLF 237

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L +E   K+  AI+  D    K++       G ++++ G   K  +  KV ++++K   
Sbjct: 238 SLLKESSKKKKLAIVNIDTDNFKQISNYIKKLGIKMVTYGINEKADYYGKVISLNSKNTE 297

Query: 292 TISVEGKDFDFLFP--LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                           + G F + N+L          +D    ++ + K+ V  GRFE V
Sbjct: 298 YEFYAKGKLISKVKLSMLGRFNILNSLSILAYVCENKLDIEKSIKAMRKVQV-EGRFEIV 356

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + VDY+HT +SLE IL   + +   R+I VFGCGGDRD+ KRPIM +IA   
Sbjct: 357 TKEKHPFIVAVDYSHTPDSLENILVEAKKLNPNRVIAVFGCGGDRDRKKRPIMAEIAEKY 416

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           ADIAI+T DN R+ED  +I  +I  G     + +  +R EAI  A++   + D++++AGK
Sbjct: 417 ADIAILTTDNQRTEDINQIMNDIEKGFKNNNYKKIIDRKEAIFEAVKEAKENDIIIIAGK 476

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET  I  + +     D +  RE L
Sbjct: 477 GHETYQIFPD-KTIHFDDREEAREAL 501


>gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 498

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 144/491 (29%), Positives = 238/491 (48%), Gaps = 33/491 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVS 74
           +    +W  +       DSR +QAG IF+A+       K     F   A+ +GA A+V  
Sbjct: 11  ANLSAEWMAQPFQGFVLDSRKVQAGQIFIALTSLSQPEKT--EQFAQIALDKGALAVVSE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL----YGKHPENILAVTGTSGKSSVA 130
           +  +L +           +VV N R  +  +  +         P  ILAVTGT+GK++++
Sbjct: 69  TELALANS----------IVVPNVRHLMGGWQKQFLLATSQVQPARILAVTGTNGKTTIS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V ++    G S   +G T        + +  TT   ++L  AL   + QG    S+EA
Sbjct: 119 RLVAELLMLQGKSCAVMGTTGNGILPNLEASSHTTLDALHLQNALHSYAKQGAEFASIEA 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+Q RL G ++   +++NL RDH+DYH T + Y  A+ +      P    A+I  D
Sbjct: 179 SSHGLEQGRLAGSEIEIAAYSNLSRDHLDYHGTLEVY--AEAKSRLFQFPSLKVAVINLD 236

Query: 250 DAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           D ++  +++ A N   +         Q     +K +         ++     ++    PL
Sbjct: 237 DEHAGVMIQAAQNNPAQPKILTYSTTQPADYLVKNIQYSLTGANFSLCTAQAEYQVQNPL 296

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F + N + +  +    G D A V+    +L   PGR + +  ++R     VDYAHT 
Sbjct: 297 LGHFNIENLVASLIMVEQAGFDLADVVATTAQLKGAPGRMQVIRDDAR--LFVVDYAHTP 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L  +L  ++     ++  VFGCGGDRD+GKRP+M + AL+ AD+ ++T DNPR+E+PE
Sbjct: 355 DALVQVLSTLKRHVEQQLWAVFGCGGDRDRGKRPLMTQAALNGADVVLLTSDNPRTENPE 414

Query: 427 KIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           +I A++  GI        E  +R EAI+ A++     D++V+AGKGHE    +  G +  
Sbjct: 415 QIFADMKAGIDFSNRVVHEIHDRREAIKFAVQQAQAGDIVVIAGKGHENYQEIE-GVRHW 473

Query: 483 SVDCDIIREIL 493
             D   ++  +
Sbjct: 474 FDDVVEVQSAI 484


>gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 503

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 156/505 (30%), Positives = 231/505 (45%), Gaps = 29/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ L  +   + I   +          I  + +DSR I+ G +FV + G   DGH + 
Sbjct: 1   MILQSLTDRLILKKITGSTS-------ADITNLETDSREIRPGGVFVCVPGFHVDGHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QAI  GA AIV     S       +  N   + V +TR+ L + A+  +G       ++
Sbjct: 54  EQAIRNGAVAIVAERELS------GLPGNVTHITVPDTRRILPILANAFFGDPTRQLKLI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V QI   +   +  IG     I +  +    TTP  I L +    +
Sbjct: 108 GITGTNGKTTTTHMVDQILNDARRKTGIIGTLYMKIGNHVEKTLNTTPDTIQLMRYFHTI 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
            S G  +  +E SSHGLD  R+ G       FTNL  DH+D+HQT ++Y N       +L
Sbjct: 168 ISHGGEYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQTMESYRNTKELLFAQL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                  +  A++ ADDA S    KR                     ++           
Sbjct: 228 GNSNRDMQKKAVLNADDAASSYYAKRTSAQIITYGIQNQADV--RATQIHHSREGCVFHA 285

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  D    + G   +YNAL A   C+  GI    +   LE+   V GRF+ + T  
Sbjct: 286 ETPWGSSDVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQTGR 345

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           R   + VDYAH  + L+  L++ + ITSG++I V GC G+RD+ KRPIM  IA   +D  
Sbjct: 346 R-FGVVVDYAHNPDGLKATLQSAKAITSGKMICVMGCRGERDRSKRPIMADIAASYSDYV 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + T DNP SEDPE+I AE++ G+       +    +R EAI+ A+EM   +D +++ G+G
Sbjct: 405 LFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRIIITGRG 464

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET   V     +   D DI+   L
Sbjct: 465 HET-RYVAGSRIESFSDEDIVMSSL 488


>gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
 gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
          Length = 491

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 134/502 (26%), Positives = 215/502 (42%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK ++ +     E++           + ++ EV  DSR  + G +FV + G + D H FI
Sbjct: 1   MKFKEWLKDLTYEVLQGS-------LDVEVEEVIYDSRKARNGAVFVCMKGTRTDSHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ +  G + +VV     L D           ++V N R+ L+L ++  +G   E ++ +
Sbjct: 54  PEVVNAGVQILVVERKTELPD-------GVTAILVHNAREALALLSAARFGYPAEKMVTI 106

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        ++ + +  G     IG T   I         TTP    L +A  ++
Sbjct: 107 GVTGTKGKTTTTHMIKTVLEACGKKVGMIGTTGIVIGQEVTPTVNTTPESYELHQAFCHM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  ++ +E SS     HR+DGI    G FTN+  DHI      +     +   ++  
Sbjct: 167 AEAGCEYMVMEVSSQAFKMHRVDGISFDYGLFTNISPDHIGP---DEHADFEEYLYYKSR 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +       I   D      + +         S+  +      + +  I     V +  + 
Sbjct: 224 IFSCCKVGIMNGDDEHWAEVVKDATCRLYSFSMEKKSTDFKAEAIRYIAQPDFVGLEFDI 283

Query: 298 K---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           K          +PG F V NAL A  +   +G+    +   LE L+V  GR E V  +S 
Sbjct: 284 KGISQLSVRVNIPGRFNVANALAAVSVLSFLGLPKENICHGLEHLNV-NGRMEIV-YSSE 341

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAH + S+E +L  +R     R++ VFGCGG+R + +R  MG  A  LAD  I
Sbjct: 342 TCTVIVDYAHNAVSMESLLSTLRDYRPKRLVCVFGCGGNRSKDRRITMGDSAGRLADFTI 401

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T DN R E  E I A+I   +      FIE  +R EAIR +I      D++ + GKGHE
Sbjct: 402 ITADNSRYEKTEDIIADIRKSLEKTGGKFIEIPDRREAIRYSITHAQPGDMIAIIGKGHE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               + NG +    D + I + 
Sbjct: 462 NYQEM-NGVRYHFSDQEEILKA 482


>gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
 gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
          Length = 491

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 165/501 (32%), Positives = 246/501 (49%), Gaps = 25/501 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D++          +        + +I  ++ D+R +Q G +F  + G   DGH F 
Sbjct: 1   MKLLDVMGS-----AETVPTLATPAGDVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFA 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P A+A+GA A+VV     L           P L V + R  ++  A+   G        +
Sbjct: 56  PDAVARGAVALVVERPLGL---------GVPELRVASVRAAMARAAANFNGDPTARLQTV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A  V+ + + +G  +  +G   + +   A++ + TT   I L   L  +
Sbjct: 107 GVTGTNGKTTTAFLVRGLLEAAGRQTGLLGTVKAVVGGEAREVQRTTAEAIELQADLRAM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G    ++E SSH L+ HR D ++  A  FTNL +DH+D+H T + YF AK RLFE  
Sbjct: 167 LDGGDVAAAIEVSSHALELHRADAVRFAAAIFTNLTQDHLDFHPTMEDYFLAKRRLFET- 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE 296
                 A++  DD Y + + +     G  ++++           ++         T    
Sbjct: 226 --GPGVAVVNVDDPYGRRLAEELRADGAALVTIALDHDADYRATELTTGLTGSAFTAQTP 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   PLPG F V N L A     A+G+    +   L +   VPGRFE V    +G 
Sbjct: 284 QGPIALRTPLPGRFNVQNVLGAVAAVRALGVPLEQIAAALPQAGRVPGRFEPV-DEGQGF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT +SL+ +L+  R +T  +++ VFGCGGDRD+ KRP+MG IA  LAD A VT
Sbjct: 343 AVLVDYAHTPDSLDNVLQAARGLTERQVLTVFGCGGDRDRTKRPLMGGIAARLADEAYVT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPRSEDPE+I  +++ G    P    + +R +AI  A+   +  DVLV+AGKGHE   
Sbjct: 403 SDNPRSEDPEQILRDVVEGTGTGPHVHVEVDRRKAIFAAVAAAHDGDVLVIAGKGHEQGQ 462

Query: 474 IVTNGEKKMSVDCDIIREILG 494
               GEK    D  + RE L 
Sbjct: 463 EFAGGEKLPFDDVTVAREALR 483


>gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
          Length = 952

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 160/484 (33%), Positives = 240/484 (49%), Gaps = 27/484 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  S  D       +TP
Sbjct: 30  HLKLDSRDIEPGDVFVACPGLSSDGRLYIDKALALGASAVLFEAPGS--DALQAAAGSTP 87

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   R  L   A   YG+      ++AVTGT+GK+S   ++     R+      IG 
Sbjct: 88  MLPVTGLRALLGELADTWYGRPSAALAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGT 147

Query: 150 TSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +    +     LTTP  + + + L+ +   G   V++EASS G++Q RLDG+++   
Sbjct: 148 LGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAQAVAMEASSIGIEQGRLDGVRVALA 207

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR----AHNA 263
           +FTNL RDH+DYH T + Y  AK RLF    P  + A++ ADD   + ++          
Sbjct: 208 AFTNLTRDHLDYHGTMERYEAAKARLFNW--PGLTAAVVNADDEAGRRLLATLPTGMAAM 265

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G  +         +  + + A    Q  T+     +   +  L G   V N L+ AG+  
Sbjct: 266 GYSLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVLY 325

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNSLEMILKN 375
            +G+  A +   L     V GR + V   +        RG  + VDYAHT ++L   L  
Sbjct: 326 KLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSSAGRGALVVVDYAHTPDALSRALTA 385

Query: 376 IRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +R +    SGR+I +FGCGG+RD GKRP MG+IA  LAD  +V+ DNPR+E P+ I  +I
Sbjct: 386 LRAVAVARSGRLICLFGCGGERDPGKRPEMGRIAAQLADHVVVSSDNPRTESPQDIIDQI 445

Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + GIP       + +R  AI   I   +  DV+++AGKGHET   +  G+K    D +  
Sbjct: 446 LAGIPPAANVDVQVDRARAIMQTIWSASPDDVVLLAGKGHETYQDIG-GDKLPFDDREWA 504

Query: 490 REIL 493
           R  L
Sbjct: 505 RLAL 508



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 150/423 (35%), Gaps = 32/423 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55
           L+     E    +    + + +R+          ++ VS+D+R I  G +FVA+VG   D
Sbjct: 479 LLAGKGHETYQDIGGDKLPFDDREWARLALLLPQVSGVSTDTRRIGPGELFVALVGENFD 538

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H ++ QA  +G        A +     A   S  P LV+ +TR  L    +    +   
Sbjct: 539 AHNYLDQAEGRG--------ACAAVVAHAVSDSKLPQLVLGDTRIALMRIGAAWRAQFTL 590

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++    +  +       S ++     +++           P+ L +  +
Sbjct: 591 PVVAVTGSNGKTTTKEMISAMLAEWQGESGRLATAGNLNNDI-------GVPLTLLRLRA 643

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +  +  G                TN  R+H ++  T +A   A      
Sbjct: 644 EHR---AAVFELGMNHPGEIAQLAAMAAPTVTLVTNAQREHQEFMHTVEAV--AHENGAA 698

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +    +Y  D     +          +      G  ++ +++ A  +  +  +  
Sbjct: 699 IAALPDDGVAVYPGDEPYCAIWDALAEPRRVLRFGLQPGLDVYAEQILADVDSTRCRVVT 758

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D   P+PG   + NAL A    IA G+     +  L +   V GR +    +   
Sbjct: 759 PVGVADLALPVPGLHNLRNALAAIASAIASGVPLDCAVRALSRFAPVAGRMQHKKMSDGT 818

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413
             I   Y    +S+ + +  +  I   R++V+   G  GD        +G  A +    A
Sbjct: 819 LLIDDTYNANPDSVRVAIDVLARIAGTRVLVLGDMGEIGDNGPALHAEVGNYAREQGLDA 878

Query: 414 IVT 416
           ++T
Sbjct: 879 LIT 881


>gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 500

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 168/503 (33%), Positives = 245/503 (48%), Gaps = 37/503 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            LQDLI     + +   +  P       I  ++ DSR ++ G++FVAI G + DGH FI 
Sbjct: 3   NLQDLIAVLPDKTVTGPAGRP-------IQGITYDSRRVEPGFLFVAIRGLRYDGHSFI- 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
                     V   A ++           P + V ++R  L L AS  YG    +  ++ 
Sbjct: 55  -------AEAVARGAAAVVGERPLALEGVPYVQVPSSRLALGLLASAFYGHPSASLVMVG 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++ + +  G  +  IG   + I+  +     TTP    L K L+ + 
Sbjct: 108 VTGTNGKTTTTHLIRWVLEAGGHPTGLIGTVHNIIAGRSLPVERTTPEAADLQKLLAAMR 167

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G+TH  +E SSH L   R+ G     G FTNL +DH+D+H + + Y  AK RLF  L 
Sbjct: 168 DEGMTHAVMEVSSHALALQRVAGCAFDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLG 227

Query: 239 PKESP---------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             E P         A+I ADD + + +  R++                  ++V       
Sbjct: 228 RNEIPGTTKPGPKAAVINADDPWGEFMAARSNAPVVTYGLNRPADIT--ARQVEVEPGGI 285

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  +     +      L G F VYNAL AAG  +A+G+D A V   LE L  VPGR E +
Sbjct: 286 RFILVSPKGEAPVRLRLTGRFNVYNALAAAGAGLALGLDPATVARGLESLQAVPGRLERI 345

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   + VDYAHT + L+ +L+++R +   GR+I VFGCGGDRD+GKRP MG I+  
Sbjct: 346 DRGQ-PFAVIVDYAHTPDGLDNVLRSVRELAGQGRVICVFGCGGDRDRGKRPQMGAISAR 404

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  ++T DNPRSEDPE I  +I  G+       +    +R  AIR A+E+    DV+V
Sbjct: 405 LADYTVLTSDNPRSEDPEAILDDIEAGVRRVPGAAYERVTDRAAAIRRALELARPGDVVV 464

Query: 464 VAGKGHETVHIVTNGEKKMSVDC 486
           +AGKGHE   I  +       D 
Sbjct: 465 IAGKGHEDYQIFAD-RTIHFDDR 486


>gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella woodyi ATCC 51908]
 gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC
           51908]
          Length = 502

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 152/504 (30%), Positives = 240/504 (47%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F    ++            +N++S DSR +  G +FVA+ G++ DG  +I
Sbjct: 1   MLLKDLLAPWFHYSGSES-----------VNKLSLDSREVDQGDLFVAVPGHQVDGRDYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A   GA+  +V +          + SN+  +      + LS  A++ Y    E   ++
Sbjct: 50  DVAAKNGAQVSLVHTDNPEMHGKV-LTSNSTQIFFFQLSRQLSALAAQAYPLPVERLKLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+   + Q+    G     +G           D+  TT  PI +   L+  
Sbjct: 109 GVTGTNGKTSITQLMAQLLVCLGKQPAVMGTLGNGLWGGLVDSGNTTADPITIMAQLNAF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G    ++E SSHGL Q R+D +      FTNL RDH+DYH T QAY  AK RLF+  
Sbjct: 169 NELGADLCAMEVSSHGLIQARVDAVPFDLAIFTNLSRDHLDYHGTMQAYGEAKFRLFKFP 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------YQGKFIHLKKVCAIHNKQQV 291
             K     +  DD   K+ + ++ +A     S+        Q   I+ K     +   + 
Sbjct: 229 SLKSGVINL--DDDLGKQWLAQSDSAKLIGYSIAGDSDTVSQDAAIYTKGNHFHNQGVRA 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +       +   PL G F + N L A      +G D   +L  + KL+ V GR E   T
Sbjct: 287 KLVWPEGCGNIDSPLLGAFNLSNLLAALAGLYQLGFDMNALLNAVPKLNAVAGRMEQFTT 346

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            + G  + VDYAHT +++E  LK +R    G +  +FGCGGDRD+GKRP+M + A   AD
Sbjct: 347 EN-GITLVVDYAHTPDAIEQALKALRGHCEGELWCLFGCGGDRDKGKRPLMAQSAEAYAD 405

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +VT DN RSE P++I  +++ G+      + + +R  AIR  +      D++++AGKG
Sbjct: 406 RIMVTSDNARSESPDEIINDVLAGLNRPERAVTQVDRELAIREVLAAAKPGDLILLAGKG 465

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
           HET      G ++   +  + R +
Sbjct: 466 HETYQE-AGGVRRDYDERALARSL 488


>gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
 gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
          Length = 495

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 132/502 (26%), Positives = 206/502 (41%), Gaps = 20/502 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+ +    +    S   +   + +I +V +D+R I  G +F+ I G   DGH   
Sbjct: 1   MILSKLLEELKCTVTAGNSAEILDADKVEIKDVVNDNRKISEGSLFICIKGANFDGHSCA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  + A AIVV     L            ++ V+NTR  ++  ++  +      +  +
Sbjct: 61  MEAANKKAAAIVVEHDVELPG-----DCKIAVIRVENTRYAMAFISAAYFDHPARKLKTI 115

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +           G     IG     I         TTP    L + ++ +
Sbjct: 116 GITGTKGKTTTTYLIRNMLENAGHKVGLIGTIEVIIGEEHIHAENTTPESFALQEYMARM 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  G     G FTN+  DHI      +          + L
Sbjct: 176 VEAGCDSVVMEVSSQGLMLHRTQGFIFDIGIFTNIEPDHIGP---NEHKDFEDYMHCKGL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K+    I   D    + +   H         G       +         +        
Sbjct: 233 LFKQCRIGICNGDDIHTDDILEGHTCKAYTYGFGEGLDLRAINLAYIRKPGELGVFFDTE 292

Query: 298 K--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +       PG+F VYNAL A  +   +G     +   L+   V  GR E V  +   
Sbjct: 293 GLINMHAEIRTPGKFSVYNALCAIAVAQELGCTPEEIAPALKDAKV-KGRIEMVKVSDE- 350

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + +L+ +L  +R     R+I VFGCGG+R + +R  MG+++   +D  I+
Sbjct: 351 FTLMIDYAHNAMALKSLLTTLRDYHPNRLISVFGCGGNRSKLRRFEMGEVSGKYSDFTII 410

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+PE I  +I  G+      +I+  +R EAIR AI+   + D++V+AGKGHE 
Sbjct: 411 TSDNPRYEEPEDIMNDIETGMKKTDGKYIKITDRKEAIRYAIDHGEQGDIIVLAGKGHED 470

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    +  II+EIL
Sbjct: 471 YQEIK-GVKYPMDERVIIQEIL 491


>gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
 gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
          Length = 500

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 153/496 (30%), Positives = 244/496 (49%), Gaps = 25/496 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L  K+  +    +S   +   +   N+    S   +   +F  I G K DGH F   
Sbjct: 8   LKALKEKNLLKEARNISNPSLVLWDV-FNK----SHQCEENSLFCCIPGEKHDGHSFASD 62

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+ +GA  ++   A  LQ          P ++V+N+R  +   A+ +YG   + +    +
Sbjct: 63  AVQRGAAVLLCQHALPLQ---------VPQIIVENSRWAMGFAAAAVYGFPSKQVSLYGI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++ +  ++ I + +G     +G          Q+   TTP    + + ++ +  
Sbjct: 114 TGTNGKTTSSYMIRSILEEAGEKCGLMGTIVYADGEKEQEADRTTPESCDVQRLIARMKR 173

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G T V +EASSHG +Q RL+G       FTNL  +H+DYH+  + YF AK +LFEE + 
Sbjct: 174 NGCTSVIMEASSHGANQGRLNGCLFQGMVFTNLTPEHLDYHKDMEHYFEAKKKLFEEYVS 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +     + +DD Y + +++              +   + L+      ++  + +     D
Sbjct: 234 ENWCGAVNSDDEYGRRLLRIYGKKCLSFGLDSTRHHDVQLQNFYMTLSELSMKVQFFNSD 293

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D   PL G F +YNAL A  +C  +G+   ++ + LE +  VPGR E     +     
Sbjct: 294 PIDITLPLTGRFNIYNALGAMAICYKMGVAPLVIKKGLESMPQVPGRLEKYFFENE-VCG 352

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE +L  +R +  G+II VFG GG+R Q  RP++G++A  LADI IVT D
Sbjct: 353 VVDYAHTPDALENVLSALREVCHGKIISVFGHGGERYQANRPLLGQVAARLADIIIVTMD 412

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           N RSEDP KI   I  GI   +E        +R EA+RTA+ M    DV+VV GKG E  
Sbjct: 413 NSRSEDPAKIAEAIEQGIASVVEAPPHYRILDRNEAVRTALSMAKPGDVVVVTGKGPERF 472

Query: 473 HIVTNGEKKMSVDCDI 488
            ++ N + + +    I
Sbjct: 473 IVMDNNKIEYNDSHAI 488


>gi|163854998|ref|YP_001629296.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella petrii DSM 12804]
 gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bordetella petrii]
          Length = 943

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 160/480 (33%), Positives = 241/480 (50%), Gaps = 26/480 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR + AG +FVA  G   DG  FI QA+A+GA A++  +          + ++  
Sbjct: 27  HLRLDSRDVAAGDVFVACSGGSADGRAFIGQALARGAAAVLCQAPA-----PGDVATDAR 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +  V + R+ L   A   YG+     +++AVTGT+GK+S   +V Q    +G     IG 
Sbjct: 82  VRAVPDLRELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIGT 141

Query: 150 TSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +    +     LTTP  + + + L+ + + G   V++EASS G++Q RLDG+++   
Sbjct: 142 LGAMLPDGRTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVA 201

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH + + Y  AK RLF+   P  + A+I ADDA  + +++         
Sbjct: 202 GFTNLTRDHLDYHGSMERYEQAKARLFQW--PGLAAAVINADDAAGERLLRTLPRGLALG 259

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +          +++ A  + Q  T++    +   +  L G   V N L+ AG+   +G 
Sbjct: 260 YTQQDVPTAFQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYKLGW 319

Query: 328 DSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             A +   L     V GR + V        G   RG  + VDY+HT +SL   L  +R +
Sbjct: 320 PLAQLARALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVDYSHTPDSLARALAALRPV 379

Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ +FGCGG+RD GKRP MG+IA DLAD   V+ DNPR EDP  I A+I+ GI
Sbjct: 380 ADARGGRLVCLFGCGGERDTGKRPEMGRIAADLADKITVSSDNPRGEDPAAIIAQIVAGI 439

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           P       + +R  AI   I   +  DV+++AGKGHET      G K    D +  R  L
Sbjct: 440 PRGARLQVEADRARAIMQTIWAADPDDVVLLAGKGHETYQD-AGGVKLPFDDREWARLAL 498



 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 157/438 (35%), Gaps = 33/438 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I A  +F+A+ G + DGH ++ QA + GA A +V+             ++ P 
Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIVAHPVD--------GASLPQ 557

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV+ +TR+ L    +    ++   ++ V G++GK++    +  I       + ++     
Sbjct: 558 LVLGDTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAILADWQGEAGRLATAGN 617

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++           P+ L +  +         + +  +  G                TN 
Sbjct: 618 FNNDI-------GVPLTLLRLRAQHR---AAVIELGMNHPGEIAVLAALAAPSVALVTNA 667

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++  + +A   A+          E    ++  D     + +    A   +     
Sbjct: 668 QREHQEFMHSVEAV--AQENGASIEALPEDGVAVFPGDDPHCGIWEAQAGARRVLRFGLQ 725

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G  ++ +++ A  +  +  +       D + P+ G   + NAL A    +A G   A  
Sbjct: 726 PGLDVYAEQIDATPHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAPLAGA 785

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
           +  L     V GR +    +     I   Y    +S+   +  +  + + R +V+   G 
Sbjct: 786 VRALSAFSAVAGRMQRQTLDDGTILIDDTYNANPDSVRAAVDVLARLPAPRALVLGDMGE 845

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
            GD        +G+ A       + T         E  R       PG +   +  E I 
Sbjct: 846 VGDNGPAMHREVGEYARQHGIDTLYTLG-------EASRDSAAAFGPGALACASVDE-IV 897

Query: 451 TAIEMLNKQDVLVVAGKG 468
            A+       +LV   KG
Sbjct: 898 AALRGARPASLLV---KG 912


>gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
          Length = 490

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 187/499 (37%), Positives = 265/499 (53%), Gaps = 16/499 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+ +   ++       P   R   I+ +++DSR    G IF A+ G   DG  +I
Sbjct: 1   MLLPELLRRAGLDIA-----LPATARACDIHGITADSRQAGPGMIFAALRGTHRDGRAYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA AQGA A+++ +     D   T   +   LV  + R  L+  A  L  + P +I A+
Sbjct: 56  PQAHAQGAAAVLLEA-----DPGFTPPPDATYLVAADARAALARIARALTPRVPAHIAAI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT+GK+S A F++QI     L +  IG                LTTP  + L   L  +
Sbjct: 111 TGTNGKTSTAEFLRQIWTVQALPAGTIGTLGAVAPCPLPDCGPVLTTPDSVGLMALLGAM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GV HV++EASSHGL+Q RLDG+   A  F+NL RDH+DYH T + Y  AK+RLF+ +
Sbjct: 171 AQAGVEHVAIEASSHGLEQRRLDGLAPYAAGFSNLTRDHLDYHGTTEHYRAAKLRLFDTV 230

Query: 238 LPKESPAIIYAD--DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           LP+   A   AD  DA    +   A   G  + + G +G  + L         Q + +  
Sbjct: 231 LPEGGIAAFNADMDDATCAALRAIAARRGLVLRTTGLRGGTLRLLDARPTPAGQVLHVMT 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +   PL G FQV N L+A  +       +   +  L +LH V GR E       G
Sbjct: 291 PAGAREMEVPLVGRFQVDNMLLACAMAGRDEGAADHAVSLLPRLHGVRGRMERAAVLDSG 350

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              YVDYAHT +++E +L ++R  T GR+++V G GGDRD+GKRP+MG+IA  LAD  IV
Sbjct: 351 AAAYVDYAHTPDAIERLLCSLRPHTPGRLVIVMGAGGDRDRGKRPVMGEIATRLADRVIV 410

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPR+E P  IRA I+   PG IE G+R +AI   + +L   DV+VVAGKGHE    +
Sbjct: 411 TDDNPRTEQPAAIRAAIMAAAPGAIEIGDRRQAIAAGLGLLGPGDVMVVAGKGHEQGQTI 470

Query: 476 TNGEKKMSVDCDIIREILG 494
            + +     D  +IR++LG
Sbjct: 471 GH-DVLPFDDATVIRDLLG 488


>gi|331088263|ref|ZP_08337182.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408507|gb|EGG87973.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 488

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 142/505 (28%), Positives = 233/505 (46%), Gaps = 29/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++           E ++  +++DSR +++G +FV I G   DGH ++
Sbjct: 1   MKLSKLLERLEYEVVQGSV-------ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
                         +A  + +          ++  +NTR  L+L ++  +G   E   ++
Sbjct: 54  SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I +  G     IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SS GL  HR  GI    G FTNLG+DHI      +       +  + +
Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGP---NEHKDFEDYKRCKAM 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
           L ++    I   D    E + R             +   +  ++  V             
Sbjct: 224 LFQQCKLGIANIDDPYYEDIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVA 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PG+F VYN+L A  +C   G+ S  + E L+  HV  GR E +  +   
Sbjct: 284 GKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKVSD-D 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ VFGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P++I  +I  GI      ++E  +R EAI+ AIE     DV+V+AGKGHE 
Sbjct: 402 TSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
              +  G K    +  +I E+L  I
Sbjct: 462 YQEIK-GVKYPMDERTLIAEVLEEI 485


>gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 495

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 220/473 (46%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++             +
Sbjct: 19  DVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+      ++ VTGT+GK+S    + Q     G  +
Sbjct: 74  PVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +      +    +     
Sbjct: 194 FDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGFGRTLFASRDPVLR 253

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S  +    +  + +   HN     ++++G+      PL G F V N L  AG   
Sbjct: 254 AIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALW 313

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 314 ALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G       I
Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 433

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 434 VQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes 266]
          Length = 529

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 153/493 (31%), Positives = 231/493 (46%), Gaps = 23/493 (4%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+              I  ++ DSR ++ G ++V + G    G  F   A+  GA A++
Sbjct: 29  DLVASFDSCRANDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVL 88

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVA 130
                +    +    +  PI+VVD+ R  +++ A++++G+      +  +TGT+GK++ A
Sbjct: 89  TDEDGA----TLAAEAGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTA 144

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVS 186
             V+   + +G     IG         +       +TTP    L    + ++ +G + V 
Sbjct: 145 FLVEAGLRAAGHHVGTIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVV 204

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+DG      +FTNLGRDH+D+H T   YFNAK RLF   L +      
Sbjct: 205 MEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN- 263

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD   +++++R    G + ++          +    A        +S    +      
Sbjct: 264 -VDDPRGRQLVERMQANGVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELS 322

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPGEF V NA +A  +  A G+    V + L    V PGR E V          VD+AHT
Sbjct: 323 LPGEFNVRNAAMALAMLEAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHT 381

Query: 366 SNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++   L   R+ +  GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+ED
Sbjct: 382 PQAIASALDAARSSVDGGRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTED 441

Query: 425 PEKIRAEIIHGI-----PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           P  IRA ++ G       G I      R EAI  A+ M    DV+ V GKGHET   + +
Sbjct: 442 PAVIRAAVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS 501

Query: 478 GEKKMSVDCDIIR 490
            E     D ++IR
Sbjct: 502 -EVLPFDDREVIR 513


>gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
 gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
          Length = 487

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 164/503 (32%), Positives = 255/503 (50%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+     +L+           +  +  +++DSR +++G++FVA+ G + DGH  +
Sbjct: 1   MKLAALLAGHPHDLL-------QGDADTDVTGIATDSRQVRSGFLFVAVPGRRVDGHAHL 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+ QGA A +VS+       +  + S   I  V++T    SL ASRL+G+    +  +
Sbjct: 54  EQAVEQGAVAALVST------TAHPLPSALTIARVESTPVAASLAASRLHGEPGRRMRVV 107

Query: 119 AVTGTSGKSSVASFVQQICQR-SGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKA 173
           ++TGT+GK+S A+ ++ +    S      IG                  TTP  + L   
Sbjct: 108 SITGTNGKTSTAAMLESVIAALSTAPVGVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPI 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L Y++ QG   V +EASS  L QHRLD      G FTNL  DH+D H T  AY  AK+ L
Sbjct: 168 LRYMADQGAGTVVMEASSLALWQHRLDHAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  +      A++  DD  S+E+++R   A    +    +      +         +  +
Sbjct: 228 FSGMSSD---AVVNTDDPVSQEILERMPRATTFGM---DKTADFTARAFEVSATGTRFLL 281

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +G+++    P+PG F V NAL A  +C  +G ++   L  LE L  +PGR E +    
Sbjct: 282 VHDGQEYPAHLPIPGRFNVANALAAVAVCHRLGYETKAALHALETLPQIPGRMETLRRAD 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G  I VDYAH+++SLE  L+ +R ++SGR++ VFGCGGDRD  KR  MG +A  L+D  
Sbjct: 342 -GTSIVVDYAHSADSLEKTLRTLREVSSGRLLTVFGCGGDRDASKRIPMGSLAGHLSDHV 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           ++T DNPR+EDPE I   +  G+      +    +R  AI  A+ +    D ++VAGKG 
Sbjct: 401 VITSDNPRTEDPETIINAVERGVRTTDTPYDRITDRRAAIARALSLAEPGDTVLVAGKGA 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET  ++         D  ++RE+
Sbjct: 461 ETYQLIGEAA-LPFEDMAVVREL 482


>gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii SDF]
 gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii]
          Length = 499

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 151/486 (31%), Positives = 234/486 (48%), Gaps = 34/486 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              QW ++  +  S DSR ++ G IF+A+       K     F   A+A GA A++  + 
Sbjct: 13  IDAQWPQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+        A+I  DDA
Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDA 238

Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ++  ++K A N   +      S+       ++  +          +  +   F    PL 
Sbjct: 239 HADLMIKSAQNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLL 298

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT +
Sbjct: 299 GHFNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPD 356

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+
Sbjct: 357 ALIQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I A++  GI        E  +R EAI+   E     D++V+AGKGHE    + NG +   
Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWF 475

Query: 484 VDCDII 489
            D   +
Sbjct: 476 DDVVEV 481


>gi|153815690|ref|ZP_01968358.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
 gi|145846931|gb|EDK23849.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
          Length = 488

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 141/505 (27%), Positives = 232/505 (45%), Gaps = 29/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++           E ++  +++DSR +++G +FV I G   DGH ++
Sbjct: 1   MKLSKLLERLEYEVVQGSV-------ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
                         +A  + +          ++  +NTR  L+L ++  +G   E   ++
Sbjct: 54  SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I +  G     IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SS GL  HR  GI    G FTNLG+DHI      +       +  + +
Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGP---NEHKDFEDYKRCKAM 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
           L ++    I   D      + R             +   +  ++  V             
Sbjct: 224 LFQQCKLGIANIDDPYYADIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVA 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PG+F VYN+L A  +C   G+ S  + E L+  HV  GR E +  +   
Sbjct: 284 GKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKVSD-D 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ VFGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P++I  +I  GI      ++E  +R EAI+ AIE     DV+V+AGKGHE 
Sbjct: 402 TSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
              +  G K    +  +I E+L  I
Sbjct: 462 YQEIK-GVKYPMDERTLIAEVLEEI 485


>gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
          Length = 563

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 157/543 (28%), Positives = 237/543 (43%), Gaps = 65/543 (11%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            + +LS       + ++   S DSR +  G ++ A+ G    G  F   A+  GA A++ 
Sbjct: 17  ALAELSGAAGPVPDLRVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGAVAVLT 76

Query: 74  SSAYSLQDFSATIRSN-----------------------TPILVVDNTRKFLSLFASRLY 110
            +A +         ++                        P+LVVD+ R  L   A+ +Y
Sbjct: 77  DAAGAAVIRGQAGSADSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQLAAAIY 136

Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSP 167
           G       ++ +TGT+GK++ A  ++   +  G S+  IG   T       D+  TTP  
Sbjct: 137 GDPGADLTMVGITGTNGKTTTAYLLESALRALGCSTGLIGTIETRVGKERLDSSHTTPEA 196

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +   L+ +  +G     +E SSH LDQHR+DG+      FTNL +DH+DYH + + YF
Sbjct: 197 TDVHALLAVMRERGADTCVMEVSSHALDQHRVDGVVYDVALFTNLSQDHLDYHGSMEDYF 256

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK RLF              DD + + ++ RA      + ++             A  +
Sbjct: 257 AAKARLFTPERSLSGVV--CVDDEWGRRLIDRATVPVTTLTTLPTPTSEPTPTSTGAEVD 314

Query: 288 K-----------------QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                               +      +       LPG+F V N  +AA   +++G + A
Sbjct: 315 WSVVPRRGAAVDGASGQPFHLVHRSGDRSLSLASHLPGDFNVANTAIAAVALLSLGHEPA 374

Query: 331 LVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            V   L     VPGR E V    +   R  VD+AHT +++++ L  +R  T GR+I V G
Sbjct: 375 RVEAALAVPPSVPGRMEVVAPGGTTDPRCIVDFAHTPDAIDVALAALRPSTRGRLIAVLG 434

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--------E 441
            GGDRD+GKR  MG+ A   ADI +VTDDNPRSEDP +IR  ++ G    +        E
Sbjct: 435 AGGDRDRGKREAMGRAAARHADIVVVTDDNPRSEDPAEIRRTVLAGARSAVTDGSAVARE 494

Query: 442 KGN---RIEAIRTAIEMLNKQ-------DVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             +   R  AI +AI M  +        D +VV GKGHE    V NG K    D + +R 
Sbjct: 495 IIDGGARSRAISSAIAMALRGSSGSDGADTVVVLGKGHEKGQEV-NGVKHPFDDREAVRT 553

Query: 492 ILG 494
            L 
Sbjct: 554 ALR 556


>gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
 gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
          Length = 503

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 153/486 (31%), Positives = 237/486 (48%), Gaps = 17/486 (3%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    +  I  ++ DSR +  G +F+ + G + DG  F P+A+  GA A+++ SA +  
Sbjct: 16  VPQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGASAVLIGSAAAAT 75

Query: 81  DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                  +   +LVV +   ++    A+  +    E I  + VTGT+GK++    ++ + 
Sbjct: 76  LPPEQSDA---VLVVPDPVARWAGELAAAFWNHPSERIGLIGVTGTNGKTTTTHLIEHLS 132

Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S   G   +     +     TT     L   L+   + G    ++E SSH LDQ
Sbjct: 133 SACGRPSALFGTLLNRWPGHSVTATHTTAVADRLQAQLAEAYAAGAQLTAMEVSSHALDQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSK 254
           HR+ G +     FTNL +DH+DYH+T  +YF AK RLF   L  +  A  ++  DD + K
Sbjct: 193 HRVAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGAQFVVNIDDPWGK 252

Query: 255 EVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +R  +   R   S G     + +  +    +  +  +     +  F  PL G F V 
Sbjct: 253 HLAERLGDRCWRSSLSEGSAHAELTMSDLVMGSSGVEGRLLSPLGEGSFQSPLLGRFNVM 312

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLE 370
           N L A G+ +  G+    +LE +     VPGR E V  + +G     + VDYAHT + L 
Sbjct: 313 NLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTVLVDYAHTPDGLS 372

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L   R    G++I VFGCGGDRD+GKR  M  IA +LAD  +VT DNPR+EDP++I  
Sbjct: 373 SALNACRPFADGKLICVFGCGGDRDRGKRSQMAAIAAELADAVVVTSDNPRTEDPQQILN 432

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +++ GIP         +R EAI  AI+     D++++AGKGHE   I+   +K    D +
Sbjct: 433 DVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKGHEDYQILGT-QKVHFDDRE 491

Query: 488 IIREIL 493
              + L
Sbjct: 492 QALKAL 497


>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 780

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 139/522 (26%), Positives = 252/522 (48%), Gaps = 40/522 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+ +        + +      E +I  +  DSR + AG +FV  VG + DGHL++
Sbjct: 243 MSLAELLDES-----KVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYL 297

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A  +GA A+V S    +++          +++V++T   L   ++  Y    +N+  +
Sbjct: 298 SEADKRGAVAVVASKEIDIEETLGCKA----LVIVEDTNAVLPALSAAFYKYPSKNMAVI 353

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176
            ++GT+GK++ A  ++ + +  GL +      +         ++  TTP  + +   ++ 
Sbjct: 354 GISGTNGKTTTAYLIKGMYEAMGLRTGMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAK 413

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQTQQAYFNAKMRLFE 235
           +   G   V +EASSHGL   R D +      FTNL  DH   +H T++ Y +AK +LF 
Sbjct: 414 MLHNGTEAVVMEASSHGLASGRCDEVDFDIAVFTNLTGDHLDSFHGTEEEYRDAKAKLFA 473

Query: 236 ELLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            ++  E    I   D  +    + +   +      ++  +   +H  K      + QV +
Sbjct: 474 RMVDPERHRKIVNIDDSNASFFIAQGNPDVPVVTFAIENKSADVHPLKFELSLFETQVLV 533

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +      +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +    
Sbjct: 534 NTPHGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELI-DEE 592

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT + L ++L ++R +   RII V GC G+ D+GKRP+M K+A D +++ 
Sbjct: 593 QAFGVIVDYAHTPDGLSILLDSVRELKPKRIITVIGCAGEGDRGKRPMMTKVATDKSEVT 652

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIRT 451
           ++T DNP++EDP  I  +++ G+   ++      + +                R  A+R 
Sbjct: 653 MLTSDNPKNEDPLDILDDMLAGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRC 712

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           A+ M  + D++V+AGKGHET  I  + +K+   D +  RE L
Sbjct: 713 AVAMGEEGDMVVIAGKGHETYQIEGD-KKEFFDDREECREAL 753


>gi|148241723|ref|YP_001226880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
 gi|147850033|emb|CAK27527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
          Length = 494

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 146/484 (30%), Positives = 226/484 (46%), Gaps = 7/484 (1%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           + +     P Q  +  + + S DSR I+ G +FV + G + DG  F   A+ QGA A V+
Sbjct: 12  IRDAGLSVPQQLPDPVVTDFSCDSRRIRPGTLFVGLPGGRVDGGSFWRAALQQGATAAVI 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               + Q+  A       +             A   +     +++ VTGT+GK++    +
Sbjct: 72  GPDAAQQEPPAPGDPVLVVADPVAAAAGRLAAAFWNHPSDQLSLIGVTGTNGKTTTTHLI 131

Query: 134 QQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + +    G  +  +G   +     +++   TTP    L   L+   + G +  ++E SSH
Sbjct: 132 EHLALACGSPTALMGTLANRWPGHSRNAVHTTPFADQLQADLAAAKAAGCSMAAMEVSSH 191

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            LDQ R+ G +     FTNL +DH+DYH T + YF AK +LF     K    +    D  
Sbjct: 192 ALDQSRVAGCRFSGAVFTNLSQDHLDYHPTLEDYFEAKAQLFAAPYLKGQAVV--NSDDL 249

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               + +     C   S+      + +  +       +  +     D  F  PL G F +
Sbjct: 250 HGRQLAQRLGDQCWRSSLEDSSAELFMDGLQFSATGVKGVLHGPSGDVPFQSPLVGRFNL 309

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G+ +  G+    +L+ LE  + VPGR E V   S    + VDYAHT + L+  
Sbjct: 310 MNLLQAVGVLLQHGLPCDGLLQALESFNGVPGRMERVPHRSDQPAVLVDYAHTPDGLDNA 369

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R    G++I VFGCGGDRD+ KRP MG IA  LAD  +VT DNPR+EDP++I  ++
Sbjct: 370 LQAARPFAEGKLICVFGCGGDRDRSKRPQMGAIAAQLADELVVTSDNPRTEDPQQILDDV 429

Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + GIP     +   +R  AI  AI      D++++AGKGHE   I+    K    D +  
Sbjct: 430 VAGIPAESACVVVADRAAAIAQAIGQAKAGDLVLIAGKGHEDYQILGT-TKVHFDDREEA 488

Query: 490 REIL 493
            + L
Sbjct: 489 AKAL 492


>gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii
           L2-63]
          Length = 488

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 133/502 (26%), Positives = 227/502 (45%), Gaps = 25/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+      +   L          +I+++  DSR ++ G  FV + G   DGH + 
Sbjct: 1   MKLKDLLINVEYTVQGNL--------NTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+ +GA A+V+S +   +     + S+  ++ V++TR  LSL +   +G   +    +
Sbjct: 53  KSAVEKGASALVISDSLDFE-----VPSDVAVVKVEDTRYALSLMSIEFFGHPEDELYTV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           A+TGT GK++  + V +I + +G+ +  IG               TTP    + K++  +
Sbjct: 108 AITGTKGKTTTTAMVAEIFEHAGIKTGTIGTLGVVYGGETHKTDNTTPESYIIQKSMRDM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G   + +EASS GL   RL G+    G FTN   DHI   + +       +     L
Sbjct: 168 INAGCKAMVIEASSIGLKHSRLAGMTFDVGIFTNFSDDHIGGVEHKDLA--EYLYCKSLL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
             +   A    DD   K++ K    +            K  +   +           +  
Sbjct: 226 FRQCKFAAANIDDPAWKDITKDFKGSVLTYGFADNADLKGKNAHLLSENGFVGVHFETEG 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K+      +PG+F  YNAL A             ++    K+  V GR E V       
Sbjct: 286 IKNLSVDVDIPGKFNAYNALAAISAVSFFDEIEDQMIIDALKVAKVKGRVERVPVPY-NY 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + S+E +L+ +R     R+I +FG GG+R + +R  MG+ +  L+D+++VT
Sbjct: 345 TLIIDYAHNALSMENVLETLRQYNPHRLITMFGAGGNRPKVRRYEMGETSGRLSDLSVVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +DN R ED   I  +I  G+      ++   NR +AI+  ++     D++V+AGKGHE  
Sbjct: 405 EDNSRFEDVMDIIEDIKTGLAKTDGKYVVVPNRRDAIKYCMDNAEDGDIIVLAGKGHEDY 464

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +  G K    + +II +IL 
Sbjct: 465 QEIK-GVKYHMDEREIIADILN 485


>gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M04-240196]
          Length = 492

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
 gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
          Length = 481

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 140/481 (29%), Positives = 233/481 (48%), Gaps = 25/481 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                ++N++  DSR +  G +F+A  G   DGHL++ +AI  GA+AI+         FS
Sbjct: 11  GNTNIEVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIICE------GFS 64

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSG 141
              +     + V +  + L++ AS  Y         + VTGT+GK+++AS + Q+  ++G
Sbjct: 65  FDRKEGITYIRVADANEALAIMASNFYENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAG 124

Query: 142 LSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                +      + +       TTP  + + + L  +   GV +  +E SSHG+ Q R +
Sbjct: 125 YKVGLLSTVKILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKRTE 184

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G++   G FTNL  DH+DYH+    Y N K + F++ LPK + A+   DD     +++  
Sbjct: 185 GLQFSGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDD-LPKSAFALTNIDDKNGNYMLQNT 243

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                             + +         +       + +    L G F +YN      
Sbjct: 244 KAKKYSYALKTLADFKAKILEKQLSGTLISID------NTEVWTKLIGVFNIYNLTAIIA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G++   +L  + +L  V GRFE+V  +  G    VDYAHT ++L+ +L+ I  I 
Sbjct: 298 TAELLGLEKLDILTIVSQLESVNGRFEYV-VSEDGVTAIVDYAHTPDALKNVLETINDIR 356

Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
           +   ++I V GCGGDRD+ KRP M  IA  L++ AI T DNPR+EDP+ I  E+  GI  
Sbjct: 357 TNNEKVITVVGCGGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQIILDEMEAGISP 416

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 +   NR +AI+TA ++ +  D++++AGKGHE+   + NG +    D + +    
Sbjct: 417 EHYNKTLTVVNRRQAIKTACKLSDAGDIILIAGKGHESYQEI-NGVRSHFNDLEEVTNCF 475

Query: 494 G 494
            
Sbjct: 476 N 476


>gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
 gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
          Length = 487

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 191/496 (38%), Positives = 276/496 (55%), Gaps = 15/496 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL+           +       + +I   + D R +  G +F A  G++ +G  FI
Sbjct: 1   MRLTDLLA-------GFPATTGADAGDARITGFAIDHRKVAPGTVFGAFRGSRFNGEDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+A GA AIV +   ++     +       +V D  R+  +  A+R +   P+  +AV
Sbjct: 54  AQAVADGAAAIVSAPGVAV----GSAIGGAVHIVDDEPRRLFARLAARFFAPFPDTTVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ + +G  +  IG    T +       LTTP  +     ++ L  
Sbjct: 110 TGTNGKTSTVELTRQLWRMAGFHAASIGTLGVTTADEQVSTGLTTPDIVTFLSNMAGLRK 169

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH T +AYF AK+RLF E++ 
Sbjct: 170 EGVTHAAFEASSHGLSQYRTEGLPVRAAAFTNLSRDHLDYHGTMEAYFAAKLRLFTEVVD 229

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++  A+++ADD  S EV+      G R+LSVG  G+ I L +       Q + + +EGK 
Sbjct: 230 QDGAAVVWADDPRSVEVIAAVRARGVRLLSVGAAGETIRLVERTPTALGQTLKLEIEGKA 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   PL G +Q  NALVAAGL +A G +  L L +L+++  V GR E    +  G  IY
Sbjct: 290 REVKLPLIGAYQAANALVAAGLVVATGGEIGLTLANLQRVAPVRGRLERAAISRTGAPIY 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE  ++ +R  T  R+I VFG GGDRD GKRP+MG+++  L+D  IVTDDN
Sbjct: 350 VDYAHTPDGLEAAIEALRPHTEARLITVFGAGGDRDTGKRPLMGEVSARLSDRTIVTDDN 409

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG- 478
           PRSEDP  IR +++ G  G IE G R EAI  AI      D++++AGKGHE   IV  G 
Sbjct: 410 PRSEDPAAIRRDVMAGATGAIEIGGRREAIAAAIAEAQAGDIVLIAGKGHEQGQIVGAGD 469

Query: 479 --EKKMSVDCDIIREI 492
                   D  + RE 
Sbjct: 470 QMRVLPFDDVTVAREC 485


>gi|323692067|ref|ZP_08106314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
 gi|323503867|gb|EGB19682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
          Length = 487

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 147/500 (29%), Positives = 232/500 (46%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++ + +   EL+           + ++++V  DSR   AG +FV + G   D H FI
Sbjct: 1   MKLREWLKEMEYELL-------QGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P  I +GA+ +V   A        T+     +L V N R  LSL ++  +G     +  +
Sbjct: 54  PDVIQKGAKVLVTEEAV-------TVPEEITVLRVGNGRNALSLLSAARFGYPARKMTTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ I + +G  +  IG     I S       TTP    L +  + +
Sbjct: 107 GVTGTKGKTTTTYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG  ++ +E SS     HR+DGI      F N+  DHI     + A F   +   + L
Sbjct: 167 VEQGCRYMVMEVSSQSYLMHRVDGIFFDYSIFLNISNDHIG--PNEHASFEEYLYYKKLL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
           L      ++  DD + +E+++ A                    K    H+   +   +E 
Sbjct: 225 LQNSRVCLVNRDDGHFREIIEGAKAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +      +PG F VYNA+ AAG+C  +G+    V   LE + V  GR E V   S   
Sbjct: 285 DYESRLRVNVPGLFNVYNAMAAAGVCSCLGLSKERVAHALEHMQVD-GRMEIV-YKSAKC 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAH + S+E +L  +R     R++VVFGCGG+R + +R  MG+I   LAD++I+T
Sbjct: 343 TVIVDYAHNAVSMESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DN R E    I A+I  G+      FIE  +R EAI  ++      D++ + GKGHE  
Sbjct: 403 ADNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQDGDIIAIIGKGHEDY 462

Query: 473 HIVTNGEKKMSVDCDIIREI 492
             +  G +   +D  +++E 
Sbjct: 463 QEIE-GVRHPFLDRTVVQEA 481


>gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
          Length = 492

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP AIA GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           AII  DD Y  E++   K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--TIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YGYGFSEHADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGATAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR ++E     D++++AGKGHE    +  G K    D ++  + L
Sbjct: 440 DRAAAIRYSVERAAANDIILIAGKGHENYQDMQ-GVKHHFSDFEVAEKAL 488


>gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 505

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 146/505 (28%), Positives = 227/505 (44%), Gaps = 24/505 (4%)

Query: 1   MK--LQDLIYKDFPE-LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK  +++L    F    + ++        E +I E+S DSR +  G +F  + G K  G 
Sbjct: 1   MKVSIKELADFLFRRRCLKKIIEAGTNCLENEILEISIDSRQVGEGALFCCLEGTKRKGV 60

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            F   A  +GA A++ S                P L+V +  +   L ++ LYG      
Sbjct: 61  EFAQDAQRRGAVAVLTSERVDDLA--------IPQLIVKDAGEACGLASAYLYGLPTSKL 112

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKAL 174
            ++ VTGT+GKS+    ++ I     +    IG          +D   TTP    +   L
Sbjct: 113 LMIGVTGTNGKSTTTYLIKSILDTGDMKCGLIGTIVYNDGKSHEDADRTTPQAPLIQSLL 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +         +EASSHG++Q R+ G       FTNL  +H+DYH   + YF AK  LF
Sbjct: 173 NKMVDNRCHACVMEASSHGIEQKRIFGCLYDRAVFTNLTPEHLDYHGDMENYFCAKRDLF 232

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +  +  A I  DD Y +++                     +     +      + IS
Sbjct: 233 IKYMRGDWKASINTDDPYGEKIANEFAPHVLGFSLRQKADNAFYGSIRRSSIRGIIMDIS 292

Query: 295 VEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +   PL GE+ V NAL A+ +  ++  D+ ++ + LE    VPGR E     
Sbjct: 293 FPDGSTLENVTLPLLGEYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFVE 352

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G    +DYAHT ++LE +L  ++ + SGR+ +VFG GG+R +  RPI+G IA   AD 
Sbjct: 353 D-GPVCIIDYAHTPDALEKVLSTVKPLCSGRVWLVFGHGGERFKENRPILGSIAARFADC 411

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +VT DNPRSEDP  I  +I  GI        +    +R EA+  A++   K DV++V G
Sbjct: 412 IVVTMDNPRSEDPRDIALQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTG 471

Query: 467 KGHETVHIVTNGEKKMSVDCDIIRE 491
           KG E   I+         D + ++E
Sbjct: 472 KGPER-QIIFKDRTIPYNDFEALKE 495


>gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M0579]
 gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240149]
 gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 492

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 221/470 (47%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCHTRLLGRFNAQNLAACVALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M6190]
 gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis ES14902]
          Length = 492

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 218/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 541

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 156/545 (28%), Positives = 243/545 (44%), Gaps = 57/545 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++ LI       ++   +      E ++  V++DSR    G +FVA+ G++ DGH F+
Sbjct: 1   MKVRQLIKAA---AVDYTVLAEGASAELEVTTVTADSRRAGPGSLFVALPGSRVDGHDFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+ QG   ++                    L   +TR       + L G   + +  +
Sbjct: 58  AAAVKQGCRVVLCQPGC---RLPTEKAPEVLHLATADTRAAFGRLCAALRGFPAQEMVMI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ + +R+G     IG  +            TTP P  L   L  +
Sbjct: 115 GITGTNGKTTASYLLEDLIRRAGGEPGVIGTVNYRYRNRVLPATHTTPDPESLQPLLREM 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  GV+HV +E SSH L+Q R+ GI   A  FTNL  +H+DYH   ++YF  K  LF   
Sbjct: 175 AEAGVSHVIMEVSSHALEQQRVAGIAFDAALFTNLSHEHLDYHGDMESYFAGKKLLFNRY 234

Query: 238 LPKESPAII-----YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---- 288
           L   + A++       DDA      +R  +     +      +     +V          
Sbjct: 235 LKPGAAAVVLSGRAEQDDASLDCWNQRLIDELSPRVLPPGCRRRPKAGEVRLWRCGAAGN 294

Query: 289 -------------QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                         +  +      +     L G+F + N L  AG+ +A+G+  A +   
Sbjct: 295 ELRLLRRRLSLAGIEAELQSSEGAWRLSSTLVGDFNLDNLLGVAGVGLALGMTPATIAAA 354

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L      PGR E    + RG  + VDYAHT ++L  +LK +R + +GR++VVFGCGGDRD
Sbjct: 355 LADAAPPPGRLERFR-SRRGVEVLVDYAHTPDALGHVLKALRRLATGRLVVVFGCGGDRD 413

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-------------------- 435
           + KRP+MG++A  LADI ++T DNPRSE P  I A+I  G                    
Sbjct: 414 RAKRPLMGEVAAALADIVVLTSDNPRSEAPAAIMADIQRGLATVDARRGRLESLLAAPLN 473

Query: 436 ----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                 G+    +R +AIR  I      DV++V GKGHET  I+         D   +RE
Sbjct: 474 RRTTCQGYDLVVSRRQAIRDTIYHARSGDVVLVCGKGHETSQIIAGSCLD-FDDRREVRE 532

Query: 492 ILGLI 496
            L ++
Sbjct: 533 QLAVL 537


>gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM
           273]
 gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 162/502 (32%), Positives = 243/502 (48%), Gaps = 27/502 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++++       +    +   Q     +  +++DSR ++ G +FVA+ G   DG  FI  
Sbjct: 15  LREILRG-----MGAYEVAAGQTDGVMVRMLTNDSRVVEPGSLFVAVRGFAADGRGFIKD 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AIA+GA A+V               +  P + V + R+ LSL A+  YG   +   I+ V
Sbjct: 70  AIARGASAVVSE-----DFPMELALNGPPCIRVPDARRALSLAAAAYYGHPADRLRIVGV 124

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++ A  +  I   +G+S   IG   + I         TTP    L +    +  
Sbjct: 125 TGTNGKTTTARLISSILSMNGISCGYIGTGKAIIGDREIPLERTTPEAHGLHRLFRMMVD 184

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G   VS+E SSH L+  R+ GI   A  FTNL  DH+D+H + ++Y  AK +LF++ L 
Sbjct: 185 GGCRAVSMEVSSHALELGRVHGIAFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQ-LA 243

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI------ 293
                I   +D  +  +  R         S+   G       +      ++  +      
Sbjct: 244 PGGIGIFNTEDPMATFMAARVAEEQRACCSLDAAGFGGMRCGLNYGAMVRREGVGSSVVA 303

Query: 294 --SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               EG   +  F L G F V N L AA     +G+ +  V   L  L  V GR E V  
Sbjct: 304 LSFPEGVQPEEEFRLLGRFNVMNMLEAAAAAHQLGVPARDVAASLPGLQGVEGRMEQVEG 363

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
               G   VDYAHT ++L   L  +R +    GR++VVFGCGG+RD+ KRP MG+IA+++
Sbjct: 364 PGFEGTAIVDYAHTPDALHQSLGTLRELLPPDGRLLVVFGCGGNRDRQKRPEMGRIAIEM 423

Query: 410 ADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD +++T DNPR EDPE I    E   G    +   +R EAIRTA+ ML   D+L+VAGK
Sbjct: 424 ADFSVITSDNPRDEDPEAILDEIEGGMGGGEHLRIPDRAEAIRTAVGMLRSGDILLVAGK 483

Query: 468 GHETVHIVTNGEKKMSVDCDII 489
           GHE     T+G ++   D +++
Sbjct: 484 GHECYQE-THGRREHFSDREVL 504


>gi|119478641|ref|ZP_01618544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
 gi|119448418|gb|EAW29669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
          Length = 508

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 157/505 (31%), Positives = 237/505 (46%), Gaps = 18/505 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + +   K+   L +  +I   ++   +++ + SDSR I AG +F+A+ G+  DG  +I
Sbjct: 2   MAINE--QKNSVILGDLTAIEDQRYAAIELSGIQSDSRKIAAGNLFLAVAGHAVDGRDYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+A GA A++V  A    D       N PI+ V+N    LS  A R Y        I+
Sbjct: 60  AQAVANGAAAVLVERAGHSAD--KLNYPNVPIIAVENLNLKLSEIAGRFYNNPSHELSIV 117

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S      QI    G S   IG     I     +   TTP  I + K L+  
Sbjct: 118 GVTGTNGKTSCTQLYMQIANLLGRSCGVIGTLGAGIDGQLNEGLNTTPDAISIQKILAEW 177

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +   ++E SSHGL+Q R+  ++     FTNL RDH+DYH +  AY   K RLF + 
Sbjct: 178 RDHELAVAAMEVSSHGLEQGRVADVQFELALFTNLSRDHLDYHGSMLAYGETKARLFRQP 237

Query: 238 LPKESPAIIYADDAYSKEVMKRAH------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             K   A+I  DD +   ++            G    +       + +  V    +    
Sbjct: 238 GLKC--AVINIDDHFGCALVDEMPATTDVIRYGVEPDARTNHSADVWVDNVRFHPSGVNA 295

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  +    +   PL GEF + N +         G   + +   + KL  VPGR E +  
Sbjct: 296 RLHSDWGSVEINSPLLGEFNLSNLVAVICCFGLQGFALSSIANVIPKLMTVPGRMERI-V 354

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +S    + VDYAHT + LE  L  +R  T G++  VFGCGG+RD GKRP+MG +    AD
Sbjct: 355 SSADITVVVDYAHTPDGLEKALLAMRQHTDGKLWCVFGCGGNRDHGKRPLMGALVQRHAD 414

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             +VT DNPR+E   +I  EI+ G+    + + +R  AI+ AI      D +++AGKGHE
Sbjct: 415 HVVVTSDNPRNESAAEIIDEILGGVDRPSMVEEDRGLAIQFAIANALPGDCVLIAGKGHE 474

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
              ++ +  +    D    R  L +
Sbjct: 475 DHQLIGD-FRVPFSDITQARLALAV 498


>gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 509

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 149/472 (31%), Positives = 230/472 (48%), Gaps = 18/472 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR    G +FVA+ G   DG  F+ QA+  G EA++  +       ++       +
Sbjct: 37  VTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEAVLCEAEA---LPTSVPEQEARV 93

Query: 93  LVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           L V   R  L      ++       ++ VTGT+GKSSV  ++  + +  G  +  IG   
Sbjct: 94  LAVPGLRGQLGELGRHVFAVPASLELIGVTGTNGKSSVTHYLAALSEALGTPAAVIGTLG 153

Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  +  RLTTP P+ L  AL  LS++GV  V++E SSH L+Q R+ G +  A  +T
Sbjct: 154 VGRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSHALEQGRVTGCRFHAAVYT 213

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL RDH+DYH +  AY  AK RLF+    + + A++  DD  S  ++         + + 
Sbjct: 214 NLSRDHLDYHGSMAAYAAAKARLFQH--RELALAVVNGDDRLSPLMLAGLAKGVRVLATG 271

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   + +         Q+  I+    + +    L G F + N L+A      +G +  
Sbjct: 272 TQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFNLDNVLLAIATLYGMGAELN 331

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG----RIIV 386
            +     +L  VPGR + +   +    + VDYAHT ++L   L+ +R         ++  
Sbjct: 332 ALFSAAARLAPVPGRMQRLVAENAPT-VVVDYAHTPDALRNALEALRAHLPSSDGAKLWC 390

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIE 441
           VFGCGGDRD+GKRP+M + A  LAD  +++DDNPR E    IR EI  G+          
Sbjct: 391 VFGCGGDRDRGKRPLMAQAAEALADRLVISDDNPRGEPAAAIRDEIAAGLSTDGRARAEC 450

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            G R EAI   ++   + D++++AGKGHET   +  GE+    D DI RE L
Sbjct: 451 MGGRREAIEWTLDAAGEHDIVLIAGKGHETYQEIA-GERHPFSDIDIAREAL 501


>gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas
           atlantica T6c]
 gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 530

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 142/512 (27%), Positives = 225/512 (43%), Gaps = 22/512 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L+    K    +   L  F +Q  +  I  +  DSR +     F+A+ G+  DG  FIP
Sbjct: 18  QLKRAHSKTAQSIKPLLLEFGIQAGDITIESLVLDSRDVAIHSAFIALKGHVRDGRDFIP 77

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILA 119
           QAI+ GA+ I+       +    ++R  + I+   +    LS  A+  YG       ++ 
Sbjct: 78  QAISLGAKVIIAECETQAEHGHTSMREQSLIISFYDLSAQLSALAAAFYGYPAKSIQVIG 137

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-------SSFAQDNRLTTPSPIYLAK 172
           VTGT+GK+S      Q+       +  IG   +         +   +   TTP  I + K
Sbjct: 138 VTGTNGKTSTVQLTSQLAALLNKRAASIGTLGSGVIDQSGACASHNETANTTPDAISMHK 197

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++  +   V  V++E SSH L Q R+  +K      TNL RDH+DYH T QAY  AK  
Sbjct: 198 LMAQFAQDQVKQVALEVSSHALVQQRVAALKTDVAVLTNLTRDHLDYHGTMQAYAQAKRE 257

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL-------SVGYQGKFIHLKKVCAI 285
           L ++        +   +      + +        +         +         K V   
Sbjct: 258 LLKQP-ELRFAVLNGNEIESKHWLAQLPSAVTPVIYGIADESLMLTDAEHQCLAKDVVYS 316

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +   +  +     + D    L G F ++NAL A    + +G     + +H   L  V GR
Sbjct: 317 NQGCRFKLVSSWGECDIQLSLLGRFNIFNALAAIASQLCLGESLNDIAKHAHLLVPVTGR 376

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E  G       + VDYAHT ++L+  L  +R  + GR+ V+FGCGGDRD GKR +MG++
Sbjct: 377 MERFG-GDNSPTVVVDYAHTPDALKQALVALRQHSQGRLSVIFGCGGDRDTGKRSLMGEV 435

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           A   AD   +T+DN RSEDP  I  +I+ G           +R  AI  A+      D++
Sbjct: 436 AETYADDMTITNDNSRSEDPTAIATDILSGCVHPEKVQVVLDRKAAIEQAVLNATANDII 495

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +VAGKGHE   I+ N       + + ++++  
Sbjct: 496 LVAGKGHEDYQIIGNQTVAY-DEREYVQQMFE 526


>gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
 gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
          Length = 499

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 145/488 (29%), Positives = 226/488 (46%), Gaps = 30/488 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              QW ++     S DSR + +G IF+A+       K     F   A+A GA AI+  + 
Sbjct: 13  IDAQWSKQPFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAIISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R         P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVRSDVRQRMGEWQERYLQHIDPVVPVRIIAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V ++          +G T          +  TT   + L  AL   + QG T  S+EASS
Sbjct: 121 VAELISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK  LF     K +   +  + A
Sbjct: 181 HGLEQGRLNGCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAVINLDDEHA 240

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  + + A  ++L+          ++  +          +      F    PL G 
Sbjct: 241 ALMINAAKQNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSPQGSFAVQSPLLGH 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N + A       G +   ++  + +L   PGR + +    R     VDYAHT ++L
Sbjct: 301 FNVENLVAALIATEQAGFNLKALVAFVPELIGAPGRMQVIRDGER--LFVVDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I 
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIF 418

Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           A++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D
Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477

Query: 486 CDIIREIL 493
              +R  +
Sbjct: 478 VVEVRSAI 485


>gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
 gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
          Length = 516

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 153/487 (31%), Positives = 236/487 (48%), Gaps = 26/487 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I  +S DSR +  G +F+A+ G + +G  +I QA+ QGA A+++ +     D     +
Sbjct: 28  TPITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALKQGAAAVLIEAGEETAD---HGQ 84

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P++ V    +F+S  A   Y      +   A+TGT+GK++ A  +  + +  G  + 
Sbjct: 85  LSVPVIAVPKLSEFVSDIAGSFYAHPSRQMAVTAITGTNGKTTCAQLLANLFELLGEPAG 144

Query: 146 QIGPTST-----------------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +G                      +  A  + LTTP  + + + L+ L   G   V++E
Sbjct: 145 CVGTVGYGTVANSAADNQVAELLPDTEIAASDILTTPDAVAMQRILAELRDAGARRVAIE 204

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ASSHGL Q R+ G+++    FTNL RDH+DYH    +Y  AK RLF     K +   +  
Sbjct: 205 ASSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGDLNSYAAAKSRLFAMSGLKHAVINLD- 263

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D+     +            S       IH  ++    +     +           PL G
Sbjct: 264 DNVGRLILANLDPAVDGITYSFENHTADIHCDRIELGASTLSAELVTPWGRGRLTSPLLG 323

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F + N L   G     G     +L    KL  VPGR E V  ++R   + VDYAHT ++
Sbjct: 324 KFNLANLLAVIGAAGMQGFKLDDILHAAAKLKAVPGRMEIVDPSARPL-VVVDYAHTPDA 382

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L+  L+ +R   SG+++VVFGCGGDRD+GKR  MG++A  LAD+ +VT DNPRSE PEKI
Sbjct: 383 LDKALRALRLQCSGKLVVVFGCGGDRDRGKRAEMGRVADQLADLVVVTSDNPRSESPEKI 442

Query: 429 RAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             +++ GI    +   +R +AIR AI      D++++AGKGHE   IV + ++    D  
Sbjct: 443 IDQVLLGISRKVLAVADRRDAIRAAINAAAVDDIVLIAGKGHEAYQIV-DAKRLPFSDLA 501

Query: 488 IIREILG 494
             R  L 
Sbjct: 502 EARLALR 508


>gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 556

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 157/550 (28%), Positives = 252/550 (45%), Gaps = 60/550 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       L  ++S        R+++ V++DSR      +FVA+ G + DGH +I
Sbjct: 1   MQLAELFRAAELPLPAKIS---RAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYI 57

Query: 61  PQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
             A+A+G   I+         Q  +         L   +TR+ L    + L G    ++ 
Sbjct: 58  ADAVARGCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLL 117

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
            + +TGT+GK++ A  ++ +    G     IG  +            TTP P  L   L+
Sbjct: 118 LIGITGTNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLA 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   GVTHV +E SSH L Q R+ G++     FTNL R+H+DYH   ++YF AK RLFE
Sbjct: 178 EMRQAGVTHVVMEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFE 237

Query: 236 ELLPKESPAIIYAD-----------------------DAYSKEVMKRAHNAG-------C 265
           + L   + A++ A                          ++  + ++    G        
Sbjct: 238 QHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAP 297

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R+   G+    + L    +  N  +  ++    +++   PL G+F + N L  A   +A+
Sbjct: 298 RLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 357

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    +   L      PGR E    + RG +++VDYAHT  +LE +L+ +R  +  R+I
Sbjct: 358 EMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLRTLRPHS-RRLI 415

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------- 437
           V+FGCGGDRD+GKR  MG+IA  LADI ++T DNPR+E+P  I A I  G+         
Sbjct: 416 VIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCR 475

Query: 438 -----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                      G+    +R  AI   I   +  DV+V+ GKGHET   + +  +    D 
Sbjct: 476 LEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQIGSQCR-YFDDR 534

Query: 487 DIIREILGLI 496
             + E L ++
Sbjct: 535 REVAEGLAVV 544


>gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis Z2491]
 gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           Z2491]
 gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240013]
          Length = 492

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 218/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 552

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 157/550 (28%), Positives = 252/550 (45%), Gaps = 60/550 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       L  ++S        R+++ V++DSR      +FVA+ G + DGH +I
Sbjct: 1   MQLAELFRAAELPLPAKIS---RAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYI 57

Query: 61  PQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
             A+A+G   I+         Q  +         L   +TR+ L    + L G    ++ 
Sbjct: 58  ADAVARGCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLL 117

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALS 175
            + +TGT+GK++ A  ++ +    G     IG  +            TTP P  L   L+
Sbjct: 118 LIGITGTNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLA 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +   GVTHV +E SSH L Q R+ G++     FTNL R+H+DYH   ++YF AK RLFE
Sbjct: 178 EMRQAGVTHVVMEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFE 237

Query: 236 ELLPKESPAIIYAD-----------------------DAYSKEVMKRAHNAG-------C 265
           + L   + A++ A                          ++  + ++    G        
Sbjct: 238 QHLKPGAAAVVCAAELAVAADSQKRAASEAGCKPAAGIDWNWRLAEQLRLCGQTAAGRAP 297

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R+   G+    + L    +  N  +  ++    +++   PL G+F + N L  A   +A+
Sbjct: 298 RLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 357

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    +   L      PGR E    + RG +++VDYAHT  +LE +L+ +R  +  R+I
Sbjct: 358 EMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLRTLRPHS-RRLI 415

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------- 437
           V+FGCGGDRD+GKR  MG+IA  LADI ++T DNPR+E+P  I A I  G+         
Sbjct: 416 VIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILAAIEAGVKGTGLQRCR 475

Query: 438 -----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                      G+    +R  AI   I   +  DV+V+ GKGHET   + +  +    D 
Sbjct: 476 LEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQIGSQCR-YFDDR 534

Query: 487 DIIREILGLI 496
             + E L ++
Sbjct: 535 REVAEGLAVV 544


>gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
 gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
          Length = 482

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 242/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIAKGAIAILCE------DMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   +     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +              + 
Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
 gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
          Length = 482

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIAKGAIAILCE------DMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +              + 
Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
 gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
          Length = 501

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 147/488 (30%), Positives = 223/488 (45%), Gaps = 25/488 (5%)

Query: 27  ERKINE---VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +  ++    + +DSR IQ G +F+A  G   DG  +I  AI +GA  +      + Q   
Sbjct: 17  QHTVSGCQLLHADSRKIQPGDVFIACQGEYADGRNYIADAITRGASFVYWDDDGAFQ--- 73

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ--R 139
                  P   + +  +   + A++ YG       I+ VTGT+GK+S+  ++ Q      
Sbjct: 74  WQPEWRVPNQGISDLSQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQWLAQAIDNLE 133

Query: 140 SGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              S   IG          Q    TTP P+ +   +     QG   +++E SSHGL Q+R
Sbjct: 134 QAPSCAIIGTVGNGFFGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEVSSHGLAQYR 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP---------AIIYAD 249
           ++G+      FTNL RDH+DYH +   Y  AK RLF     + +          A+    
Sbjct: 194 VNGVPFHTAVFTNLTRDHLDYHGSMAEYGAAKERLFYWQGLQNAIINSDDAFGAALAAEL 253

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             +S  +     N          +   I +    A      ++++    +      L G 
Sbjct: 254 KQHSGSLKTEGCNEVKTYTYGFNEQADICITCFAANREGMSISLATPWGEGSAQTRLLGR 313

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A G   A G D    L  L ++    GR +          + VDYAHT ++L
Sbjct: 314 FNAQNFAAALGALCAAGYDFQAALTALSRIRPATGRMD-CIIQPDKPLVVVDYAHTPDAL 372

Query: 370 EMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           E  L  +R I     R+  VFGCGGDRD+GKRP+MG++A  LAD A+VT DNPR+EDP+ 
Sbjct: 373 EKALTTLREIQQPESRLWCVFGCGGDRDRGKRPLMGEVAARLADKAVVTSDNPRTEDPQA 432

Query: 428 IRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           I A+I+  +P   + + +R  AI   I     QD++++AGKGHET   V  G K    D 
Sbjct: 433 IIADILPAVPHPALVEADRKAAIEQTIAQAQAQDIVLIAGKGHETYQDVQ-GVKHHFSDF 491

Query: 487 DIIREILG 494
           ++ ++ LG
Sbjct: 492 EVAQDALG 499


>gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA2]
 gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL044PA1]
 gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA3]
          Length = 499

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 147/492 (29%), Positives = 228/492 (46%), Gaps = 23/492 (4%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L           I  ++ DSR ++ G ++V + G    G  F   A   GA A++  
Sbjct: 1   MASLDGCRADGNGPAITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTD 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASF 132
              +       + +  P+++VD+ R  +++ A+R++G       +  +TGT+GK++ A  
Sbjct: 61  EHGA----KLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTAFL 116

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V+   + +G     IG         +       +TTP    L    + +  +G + V +E
Sbjct: 117 VEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVME 176

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG      +FTNLGRDH+D+H+T   YF AK RLF   L +        
Sbjct: 177 VSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFTPDLARVGVIN--V 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD   +++++R    G R ++          +    A        ++    +      LP
Sbjct: 235 DDPRGRQLIERMQANGVRAVTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELSLP 294

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GEF V NA +A  +    G+    V + L    V PGR E V   +      VD+AHT  
Sbjct: 295 GEFNVRNAAMALAMLETAGLAFDDVADGLCSAQV-PGRMERVDLGADAPTALVDFAHTPQ 353

Query: 368 SLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++   L   R++  SGR+I V G GGDRD  KR  MG++A + ADI ++TDDNPR+EDP 
Sbjct: 354 AIASALDAARSLADSGRLIAVLGAGGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPA 413

Query: 427 KIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
            IRA ++ G        I   +   R EAI  A+ M    DV+ V GKGHET   + + E
Sbjct: 414 VIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKGHETGQHIGS-E 472

Query: 480 KKMSVDCDIIRE 491
                D ++IR 
Sbjct: 473 VLPFDDREVIRN 484


>gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
 gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
          Length = 482

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 242/503 (48%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIAKGAIAILCE------DMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLKLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I   +     TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +              + 
Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNTRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA6140]
          Length = 492

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
          Length = 499

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 145/499 (29%), Positives = 231/499 (46%), Gaps = 26/499 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +N  +   ++     +  + SDSR +     FVA  G++ DG  FI QAI +GA +++  
Sbjct: 1   MNAFNPDGLKLLGVNVRHLVSDSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVIWE 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASF 132
                  F      + P L V + R    L A  +YG+  +   ++ +TGT+GK+S++ +
Sbjct: 61  E----HGFKWNPTWSVPNLAVSDLRHQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHW 116

Query: 133 VQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + +     G  S  IG          +    TTP  + +   L+    QG     +E SS
Sbjct: 117 LAKSFGALGRKSALIGTLGNGFPEALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H L Q R++G+       TNL RDH+D+H   Q+Y  AK RLF+        A++  DD 
Sbjct: 177 HALTQGRVNGVHFDVALLTNLTRDHLDFHGDMQSYAAAKKRLFDW--ASLKYAVLNLDDM 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  E+ ++  +A   V+  G              + ++            + +       
Sbjct: 235 FGAELAEQLQDASVEVIGYGLNDDSLKMAERLGIRMVYGSLTQMDAQGLTLQLHTSWGAA 294

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G F   N L A  + +A  +        L     V GR + +G       + V
Sbjct: 295 ALCSRLIGSFNASNLLGALAVLLASEVRIDDAARELGLQKAVAGRMQTLGGKGLPT-VVV 353

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           DYAHT ++L+ +L  +R +T    G++I VFGCGGDRD+GKRP+MG +A  LAD+ I+T 
Sbjct: 354 DYAHTPDALDKVLTTVREVTESAGGKVICVFGCGGDRDRGKRPMMGTVASKLADVRIITS 413

Query: 418 DNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DNPRSE+  +I +EI  G+ G +    +R +AI  AI      D +++AGKGHE    + 
Sbjct: 414 DNPRSEEAAEIVSEIAAGMQGEYQVIEDRAKAITLAIANARHIDTVLLAGKGHENYQEIK 473

Query: 477 NGEKKMSVDCDIIREILGL 495
            G +    D +I    L +
Sbjct: 474 -GVRYPFSDSEIAHRALSM 491


>gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
 gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 492

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 495

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 183/497 (36%), Positives = 263/497 (52%), Gaps = 22/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E             +  +   + D R +  G +F A  G K +G  FI
Sbjct: 1   MKLNRLLEQAGRE--------DRGAEDAIVTGFAIDHRKVAPGTVFGAFAGAKVNGEDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A        + A ++             +  +  RK  +  A++ +   P+ I+AV
Sbjct: 53  DAAVA--------AGAIAVVVRPGAKVEGALQIADEAPRKAFAEIAAQYFTPAPDTIVAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ +  G  +  IG    T    +    LTTP  +     LS L+ 
Sbjct: 105 TGTNGKTSTVEMTRQLWRMLGERAASIGTLGVTTPDESVSTGLTTPDIVTFHANLSGLAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH++ EASSHGLDQ+R  G +++AG+FTN  RDH+DYH++ QAYF AKMRLF+E++ 
Sbjct: 165 EGVTHIAYEASSHGLDQYRNYGARVVAGAFTNFSRDHLDYHESMQAYFEAKMRLFDEVIA 224

Query: 240 KESPAIIYADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
               A+I+AD   ++ +   RA   G R+ +VG QG  I L         Q V I+  G 
Sbjct: 225 DGGTAVIWADGGEWADKARTRAEKRGLRIFTVGPQGDDICLIGQEPSQLGQSVEIARNGD 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G++Q  NAL AA L +A G D A + + + +L  V GR E       G  +
Sbjct: 285 RRTIRLPLIGQYQAANALTAAALALASGADEARLWDAVGRLQPVRGRLERAVITQSGAPV 344

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAHT ++LE  +  +R   +GR+IVVFG GGDRD GKR  MG++A  LAD+ IVTDD
Sbjct: 345 YVDYAHTPDALEAAIAALRPHVNGRLIVVFGAGGDRDTGKRGPMGEVASRLADVVIVTDD 404

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           NPR EDP  IR  ++ G      E   R EAI  AIE++ + D++++AGKGHE   I+ +
Sbjct: 405 NPRGEDPADIRRAVMQGAGENTREVAGRREAIAQAIEIIGRDDIVLIAGKGHEEGQIIGS 464

Query: 478 G---EKKMSVDCDIIRE 491
           G         D  + RE
Sbjct: 465 GDTMRVLPFNDVQVARE 481


>gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M13399]
          Length = 492

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +   +     A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
 gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
          Length = 499

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 143/488 (29%), Positives = 225/488 (46%), Gaps = 30/488 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSA 76
              QW ++  +  + DSR ++AG IF+A+       K     F   A+  GA A++  + 
Sbjct: 13  IDAQWPQQPFHGFNLDSRKVEAGQIFIALTSYSQPEKT--RTFAEAALTNGALAVISETE 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132
             + +            V  + R+ +  +  R   +     P  I+AVTGT+GK++++  
Sbjct: 71  LGVANE----------WVCSDVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T          +  TT   + L   L   +  G T  S+EASS
Sbjct: 121 IAELISSQQQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNELHAYAKHGATFASLEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--AD 249
           HGL+Q RL+G  +    ++NL RDH+DYH T +AY  AK RLF+    K +   +     
Sbjct: 181 HGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFNSLKVAVINLDDAHA 240

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   K              S+       ++  +          +  +   F    PL G 
Sbjct: 241 DLMIKSAKNNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGH 300

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N + A       G D   ++  + KL   PGR + +  + R     VDYAHT ++L
Sbjct: 301 FNVENLIAALIAAEQAGFDLQALVNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +LK ++   S ++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I 
Sbjct: 359 IQVLKTLKRHVSNQLWAVFGCGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIF 418

Query: 430 AEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           A++  GI        E  +R EAI+   +     D++V+AGKGHE    + NG +    D
Sbjct: 419 ADMKQGIDFSGHRMHEIHDRREAIKFVTQQAQAGDIVVIAGKGHENYQEI-NGVRHWFDD 477

Query: 486 CDIIREIL 493
              +R  +
Sbjct: 478 VVEVRSAI 485


>gi|206602137|gb|EDZ38619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Leptospirillum sp. Group II '5-way CG']
          Length = 509

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 159/497 (31%), Positives = 245/497 (49%), Gaps = 19/497 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +N       ++ +R +  ++ DSR ++ G +F+   G       F+ +A+ +GA  +V  
Sbjct: 15  LNLPPPVCGRFPDR-VLNLTDDSRQVEEGALFLIRPGEGFR-WEFVNEALDRGAFYLVAD 72

Query: 75  SAY-----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
                   S    S+ IR +  + +V+N  + +   AS  +G       ++ VTGT+GK+
Sbjct: 73  RNAFPEIDSRPALSSRIRESAGLSLVENLPRSVGQLASSWWGFPSSSLKVIGVTGTNGKT 132

Query: 128 SVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +   + +C+  GL    IG     +     +   TTP  I +    +     G+  VS
Sbjct: 133 TSSFLTRSVCRAGGLPCGLIGTVVFDVGDGETEAPQTTPGAIQIQSLFAESLQNGLKSVS 192

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR--LFEELLPKESPA 244
           +E SSH LDQ RL G       FTNL RDH+DYH+T +AYF AK +  ++E        A
Sbjct: 193 MEVSSHALDQDRLAGTIFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGTHPVA 252

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +++  D Y   + K     G RVL+ G      I    V    +  + T+     +    
Sbjct: 253 VVHTGDEYGARLAKELERDGRRVLTYGEGADAMIRPIHVDVGLSGIRGTLRTSRGEMSID 312

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G + + N L A G   A+G+ +  + E +  L  VPGRFE V  +  G  + VDYA
Sbjct: 313 SSLSGHYNLQNILGAVGCGEALGLSTEKIAEGIHSLSGVPGRFERV-DSPAGFSVIVDYA 371

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++L  +L  +R +T G++I VFGCGGDRD+GKRP MG +A  L+D  ++T DNPR+E
Sbjct: 372 HTDDALSNLLSAVRPVTRGKVITVFGCGGDRDRGKRPRMGNVAGRLSDFVVLTSDNPRTE 431

Query: 424 DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           +PE I  EI  G+      ++   +R  AI  AI      D +V+AGKGHE   I+   E
Sbjct: 432 NPESILDEIEPGLRETGTPYVRVSDRKSAIFDAIRRARSGDAVVIAGKGHENYQILG-KE 490

Query: 480 KKMSVDCDIIREILGLI 496
           K    D ++ R  L  I
Sbjct: 491 KIHFDDREMARLALAEI 507


>gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 482

 Score =  292 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 141/492 (28%), Positives = 220/492 (44%), Gaps = 35/492 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +++        +  V+ DSR +Q G+++VA+ G + DGH FIP A+ +GA AIV      
Sbjct: 12  ALYRAPGPPHPVKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDAVQRGAVAIVGEEP-- 69

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQI 136
                  +    P L V + R+ LS  A+  YG       ++ VTGT GK++ +  V  +
Sbjct: 70  -------LEPGVPYLRVPDARRALSRLAAAFYGFPSTRLFVIGVTGTDGKTTTSCLVHHL 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             R+G  +  I              +   TTP    +  AL+ +  +G+TH  +E SSH 
Sbjct: 123 LTRTGRGAGLISTVGLRYGEETRLLEGHFTTPEAPEVQAALAEMVRRGLTHAVLETSSHA 182

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L QHR+  +      +TNL  +H+D+H + +AYF AK  L          A         
Sbjct: 183 LAQHRVADVAYDLAVWTNLSPEHLDFHGSLEAYFQAKAALVNRAGFSILNAGCPY----- 237

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                          + G Q       +V    +  + T+   G   +   P+ G + V 
Sbjct: 238 -----AMRLTHRPHTTYGVQAGAYRAVRVRESTDGLRFTLEAPGFTGEAFLPMIGRYNVE 292

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A       G+     L  L +   VPGR + +   +   R  VD+AHT  +L   L
Sbjct: 293 NALAALAAAHRAGVPLEEALPALARFSGVPGRMQIL--QAHPIRAVVDFAHTPKALAKAL 350

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R  T GR+IVV G  G+RD  KR  +G+ A+ LAD A+ T+++ RSED   I  E+ 
Sbjct: 351 TALRPTTPGRLIVVIGAAGERDPAKRAPLGRTAVTLADFAVFTEEDARSEDVHAILQEME 410

Query: 434 HGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G           +  K +R +AIR A+ +    D +V AGKGHE      + E     +
Sbjct: 411 RGAREAGGVRGTHYALKPDRRDAIRYALSLARPGDTVVFAGKGHERTLERAD-ETLPWDE 469

Query: 486 CDIIREILGLIL 497
            + +R+ LG+ +
Sbjct: 470 AEEVRKALGIAI 481


>gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M01-240355]
          Length = 492

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 218/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis N1568]
          Length = 492

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 218/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +   +  +  A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVCRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +           +      L G F   N      L  A G  
Sbjct: 263 YGFSEQADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|317501923|ref|ZP_07960107.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896603|gb|EFV18690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 488

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 137/505 (27%), Positives = 223/505 (44%), Gaps = 29/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   E++           E ++  +++DSR +++G +FV I G   DGH ++
Sbjct: 1   MKLSKLLERLEYEVVQGSV-------ETEVTTLANDSRKVESGSVFVCISGAVFDGHQYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +A  + +          ++  +NTR  L+L ++  +G   E +  +
Sbjct: 54  SDVAK-------KGAAAIIAERDIEAPKGVTVIKAENTRYALALMSAAYFGYPAEKLKVI 106

Query: 121 TGTSGKSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +         G       IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G   V +E SS GL  HR   I    G FTNLG+DHI      +       +  + +
Sbjct: 167 VEEGCDSVVMEVSSQGLMLHRTAEIPFEIGIFTNLGKDHIGP---NEHKDFEDYKRCKAM 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
           L ++    I   D    E + R             +   +  ++  V             
Sbjct: 224 LFQQCKLGIANIDDPYYEDIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVA 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PG+F VYN+L A  +C   G+ S  + E L+  HV  GR E +  +   
Sbjct: 284 GKADFDVEIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHV-KGRIEMIKVSD-D 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ VFGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYEPKRLVCVFGCGGNRSKDRRYEMGEVSGRLADLTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P++I  +I  GI      ++E  +R EAI+ AIE     DV+V+AGKGHE 
Sbjct: 402 TSDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
              +  G K    +  +I E+L  I
Sbjct: 462 YQEIK-GVKYPMDERTLIAEVLEEI 485


>gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. D2]
 gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
 gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
          Length = 482

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 154/503 (30%), Positives = 241/503 (47%), Gaps = 32/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+    P       +        +I  V+ DSR ++AG +F+A+ G + DGH +I
Sbjct: 1   MLLNELLKAIQP-------VEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P AIA+GA AI+        D      +    + V ++   +   A+  YG     +  +
Sbjct: 54  PAAIAKGAIAILCE------DMPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+++A+ +    +  G     I    + I         TTP PI L   L  +
Sbjct: 108 GVTGTNGKTTIATLLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G  +V +E SSH + Q R+ G+K   G FTNL RDH+DYH+T + Y  AK + F++ 
Sbjct: 168 ADEGCKYVFMEVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDD- 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK + ++   DD     + +   +                + +              + 
Sbjct: 227 LPKNAFSLTNLDDKNGLVMTQNIRSKVYTYSLRSLSDFKGRVLESHFEGMLL------DF 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +      G+F   N L   G  + +G     VL  L  LH V GRF+ V  + +G  
Sbjct: 281 NNHELAVQFIGKFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVR-SPQGIT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             VDYAHT ++L  +L  I  +    G++I V G GG+RD+GKRPIM K A   +D  I+
Sbjct: 340 AIVDYAHTPDALINVLNAIHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVII 399

Query: 416 TDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T DNPR E+P+ I  +++ G     +   +   +R EAIRTA  +  K DV++VAGKGHE
Sbjct: 400 TSDNPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHE 459

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G K    D ++++EI 
Sbjct: 460 NYQEIK-GVKHHFDDKEVLKEIF 481


>gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis 8013]
          Length = 492

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 220/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP AIA GA  +          F+     N P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDDGK---FTWNPEWNVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 495

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 141/472 (29%), Positives = 218/472 (46%), Gaps = 18/472 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  VS  S  ++ G ++VA+ G +  G  F+ +A+ +GA A++  S        A + 
Sbjct: 33  VEVTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAVAVLSDS----WGVEAAVE 88

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L   + R    + +S +YG+  +   ++ +TGTSGK+S A  V+   + +G  + 
Sbjct: 89  HGLPALHHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAYLVEAGLKAAGRVTG 148

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG   T   +    +  TTP    L    +Y   QGVT + +E SSH L  HR +GI  
Sbjct: 149 LIGTVETRIGAETIVSERTTPEATELQALFAYALEQGVTDIVMEVSSHALTLHRAEGISF 208

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G FT  G DH+D+H T   YF AK +LF+          +   D       KR     
Sbjct: 209 AVGGFTMFGLDHLDFHPTVDEYFAAKAKLFDG----RCRVEVVNADDA---WAKRLVTPD 261

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+        +  +      Q   ++           LPG   + NAL+A G   A
Sbjct: 262 TVTYSLVDANATWSVDSITGSGFDQSFEVTSPHGRHHGSVRLPGRHNIANALLAYGCLTA 321

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+     +  +     VPGR E V +        VDYAH  +++  +L+ +R ITSG +
Sbjct: 322 VGVPVETAIAGVADCAGVPGRMELV-SEDNPVHGVVDYAHKPDAITAVLEALRPITSGSL 380

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEK 442
           I V G GGDRD  KR +MG  A   AD+ IVTDDNPR+EDP  +RA ++ G+     +E 
Sbjct: 381 IAVIGAGGDRDPSKRTLMGDAAARAADLVIVTDDNPRTEDPAAVRAGVLAGVGDRPHLEV 440

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +R  AI  A+      D + + GKGHE+   + +       D  ++ + L 
Sbjct: 441 ADRATAIDEAVARAKPGDTIALLGKGHESGQELAD-RVLPFDDRRVLADALS 491


>gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
 gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
          Length = 490

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 152/499 (30%), Positives = 227/499 (45%), Gaps = 23/499 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ L+              P       ++ +  DSR++  G +F+A+ G   DG  FI
Sbjct: 2   MTLQQLLPDV---------TLPASAAGVVLSGLQLDSRNVAPGDLFLAVPGVASDGRQFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA+     A  V+     + F        P + +    + +   A+R YG+     N++
Sbjct: 53  SQAV----AAGAVAVLADAETFEIQQDQAVPCVALPELGRRVGTLAARWYGEPGAAMNVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+  F++      G     +G          Q    TTP PI L   L+ +
Sbjct: 109 GVTGTNGKTSITWFLRDALNALGHRCALVGTLGLGLKGDEQTTGHTTPDPITLQAGLARV 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V++E SSH LDQHRL    +    F+NL RDH+DYH   +AY  AK  LF   
Sbjct: 169 RDAGADCVAMEVSSHALDQHRLGSTPVPVAVFSNLSRDHLDYHGDMEAYLAAKSVLFTR- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+I  DD  +  ++    +    V      G  +    V    +  +  ++V G
Sbjct: 228 -DGVKLAVINCDDPAAYSLIGCLADGVRCVTFGDQPGATVRCAAVTFTADGMRAELTVGG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PL G F + N +  AG+    GI +A +   L  +  VPGR E V        
Sbjct: 287 DPLTVTLPLFGRFNLSNVMAVAGILHGQGISTASLGGALAAVTAVPGRMEPVQQPGCPT- 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + LE  L+  R    GR+  + GCGGDRD GKRP M  +A   AD  ++T 
Sbjct: 346 VIVDYAHTPDGLEKALQACRAHFHGRLFCIVGCGGDRDTGKRPQMAAVAERGADRVVLTS 405

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPRSEDP++I  ++  G+           R +A+   ++  +  DV+++AGKGHE    
Sbjct: 406 DNPRSEDPQQIIDDMRAGLADAASVQAIVERAQAVMDTVQAASDGDVILLAGKGHEDYQE 465

Query: 475 VTNGEKKMSVDCDIIREIL 493
           V +G +  S D D+ R+  
Sbjct: 466 V-DGVRYPSDDRDLARKAF 483


>gi|74310704|ref|YP_309123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sonnei Ss046]
 gi|73854181|gb|AAZ86888.1| meso-diaminopimelate-adding enzyme [Shigella sonnei Ss046]
          Length = 497

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 172/507 (33%), Positives = 253/507 (49%), Gaps = 27/507 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           QAIAQG  AI+  +    +  D         P++ +    + LS  A R Y +  +N+  
Sbjct: 54  QAIAQGVAAIIAEAKAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSY 176
           + VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ 
Sbjct: 114 VGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAG 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L  QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E
Sbjct: 174 LVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE 233

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  AII ADD   +  + +  +A        ++    G+++    V    +   + 
Sbjct: 234 --HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIR 291

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            S    D +    L G F V N L+A    +A+G   A +L+   +L  V GR E   T 
Sbjct: 292 FSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TA 350

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+
Sbjct: 351 PGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADV 410

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           A+VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VAGKGH
Sbjct: 411 AVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGH 470

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           E   IV N       D   +  +LG+I
Sbjct: 471 EDYQIVGNQRLDY-SDRVTVARLLGVI 496


>gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           denitrificans OS217]
 gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella denitrificans OS217]
          Length = 502

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 135/508 (26%), Positives = 217/508 (42%), Gaps = 34/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L D++   F     + +           + +S DSR +  G +F+A+ G++ DG  +I
Sbjct: 2   MRLSDILAPWFHYAGVESA-----------SSMSLDSRKVTQGCLFIALPGHQVDGRAYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSAT-IRSNTPILVVDN---TRKFLSLFASRLYGKHPEN 116
            QA AQGA A +V +           + S      V N       LS  A++ Y   P+ 
Sbjct: 51  EQAKAQGAVAALVHTDDPDSHGKVENLGSGITPWPVVNFFQLSSQLSAVAAQFYPLTPQK 110

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK+SV+  + Q+    G  +  +G           D+  TT   + +   
Sbjct: 111 MALIGITGTNGKTSVSQLIAQLTSLLGGKAAVMGTLGNGLWGQLVDSGNTTADAVTVMAQ 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L     +G    ++E SSHGL Q R+  +      FTNL RDH+DYH    +Y  A  + 
Sbjct: 171 LHDFDVKGADICAMEVSSHGLVQGRVTAVPFDIAVFTNLTRDHLDYHGDMASY--ASAKK 228

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                P    A++  DD    +  +       +  SV    K  +        +      
Sbjct: 229 RLFQFPSLKYALLNLDDDTGAQWFEELAATKRKGFSVSPNAKACYYTDKLHFDDAGVQGD 288

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAA---------GLCIAIGIDSALVLEHLEKLHVVPG 344
                  +          V   L A                G+  A +L    KL  V G
Sbjct: 289 FYYHDFGENAVSQHKARLVSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAG 348

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E   +  +G  + VDYAHT +++E  LK +R    G++  VFGCGGDRD+GKRP+M +
Sbjct: 349 RMERF-SLPQGASLVVDYAHTPDAIEQALKALRIHCHGQLWCVFGCGGDRDKGKRPLMAQ 407

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
            A   AD  +VT DN RSEDP  I  +++ G+      + + +R+ A++    +    D+
Sbjct: 408 AAERFADKLMVTSDNARSEDPSAIIGDVLKGLTQPENALMEVDRVSAVKRVATLAKAGDI 467

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +++AGKGHET   +         +  + 
Sbjct: 468 VLLAGKGHETYQEIAGQRLDY-DERALA 494


>gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
 gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
          Length = 498

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 143/479 (29%), Positives = 225/479 (46%), Gaps = 24/479 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +++++DSR    G +F A  G + DG  F+  A+  GA A++        D         
Sbjct: 18  DDITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDG----DGFCAPALAV 73

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P   V   R+     A  L+G+  +   +  VTGT+GK++V+  + +     G     +G
Sbjct: 74  PGFGVRGLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVG 133

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     ++   TTP  + L +  +   +QG    ++E SS GLDQ R++G +    
Sbjct: 134 TLGCGFPDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH T +AY  AK RLFE             DD +   + +R    G  V
Sbjct: 194 IFTNLSRDHLDYHGTMEAYAAAKARLFERPELSACVIN--IDDPWGLALARRLVVEGRAV 251

Query: 268 LSVGYQGKFI---------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           ++                    ++ A     + T+  EG++ +    +   F V N +  
Sbjct: 252 IACTLYAANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAV 311

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           AG  +A GI    +   L +L    GR + VG       + +DYAH+ ++L  +L+ +R 
Sbjct: 312 AGALLARGIAFDELPPVLGRLAPPQGRMQLVG-GVCEPLVVIDYAHSPDALAKVLEALRG 370

Query: 379 ITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                 GR++ VFGCGGDRD GKRP+MG+IA  +AD  ++T DNPRSEDP++I   I  G
Sbjct: 371 TVHSRRGRLVCVFGCGGDRDPGKRPMMGEIASAIADRVVITSDNPRSEDPQRIVEAIAAG 430

Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                E   +R +AI  A+      DV+++AGKGHE    +  G++    D +  +  L
Sbjct: 431 AGAAAECVVDRAQAITRAVGEARADDVVLIAGKGHEPYQEIL-GQRLPFSDLEQAKRAL 488


>gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 951

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 159/483 (32%), Positives = 241/483 (49%), Gaps = 26/483 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR I+ G +FVA  G   DG L+I +A+A GA A++  +  +    +   ++  P
Sbjct: 30  HLKLDSRDIEPGDVFVACPGLSSDGRLYIEKALALGASAVLFEAPANDAVAAVADQA--P 87

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   R  L   A   YG+      ++AVTGT+GK+S   ++     R+      IG 
Sbjct: 88  MLPVTGLRALLGELADTWYGRPSAELAVVAVTGTNGKTSSVQWIAHALSRNDKPCGTIGT 147

Query: 150 TSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +    +     LTTP  + + + L+ +   G   V++EASS G++Q R+DG+++   
Sbjct: 148 LGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGAKAVAMEASSIGIEQGRMDGVRVALA 207

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHNAG 264
           +FTNL RDH+DYH T + Y  AK RLF    P  + A+I ADD   + ++         G
Sbjct: 208 AFTNLTRDHLDYHGTMERYEAAKARLFRW--PGLTAAVINADDEAGRRLIAGLPAGMAMG 265

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             + +       +  + + A    Q  T+     +   +  L G   V N L+ AG+   
Sbjct: 266 YSLSADPEIPAGMRARDLQATAQGQIFTLVSPHGEAQIVTRLLGAHNVSNLLLVAGVLYQ 325

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSR--------GGRIYVDYAHTSNSLEMILKNI 376
           +G+  A +   L     V GR + V   +         G  + VDYAHT ++L   L  +
Sbjct: 326 LGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATGRGALVVVDYAHTPDALARALSAL 385

Query: 377 RTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +    SGR+I +FGCGG+RD GKRP MG+IA DLAD  +V+ DNPR+E PE I  +I+
Sbjct: 386 RAVATARSGRLICLFGCGGERDPGKRPEMGRIAADLADHVVVSSDNPRTESPEAIVEQIL 445

Query: 434 HGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            GIP  +    + +R  AI   I      DV+++AGKGHET   +  GEK    D +  R
Sbjct: 446 AGIPDSVRPDVQVDRARAIMQTIWAAAPDDVVLLAGKGHETYQDIG-GEKLPFDDREWAR 504

Query: 491 EIL 493
             L
Sbjct: 505 LAL 507



 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 146/423 (34%), Gaps = 32/423 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55
           L+     E    +    + + +R+          I  VS+D+R I  G +FVA+VG   D
Sbjct: 478 LLAGKGHETYQDIGGEKLPFDDREWARLALLVPQIKGVSTDTRRIGQGELFVALVGENFD 537

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H ++ QA A+G        A +     A   +  P LV+ +TR  L    +    +   
Sbjct: 538 AHNYLDQAEARG--------ACAAVVAHAVPDAKLPQLVLGDTRIALMRIGAAWRAQFAL 589

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++    +  +       + ++     +++            + L     
Sbjct: 590 PVVAVTGSNGKTTTKEMISAMLAEWQGEAGRLATAGNLNNDIGVPLT----LLRLRPEHR 645

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +   +   E +           +       TN  R+H ++  + +A   A      
Sbjct: 646 AAVFELGMNHPGEIAQLAAIAAPTVAL------VTNAQREHQEFMHSVEAV--AHENGAA 697

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                E    +Y  D     +          +      G  ++ +++ A  +  +  +  
Sbjct: 698 IAALPEDGVAVYPGDEPYSAIWDALAEPRRVLRFGLQPGLDVYAEQILADVHATRCRVVT 757

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D   P+PG   + NAL A    IA G      +  L     V GR +    +   
Sbjct: 758 PMGVADLTLPVPGLHNLRNALAAIASAIAAGAPLEGAVRALSGFSPVAGRMQHKHMSDGT 817

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413
             I   Y    +S+ + +  +  +   R++V+   G  GD        +G  A +    A
Sbjct: 818 LLIDDTYNANPDSVRVAVDVLARMAGKRVLVLGDMGEVGDNGPAMHVEVGNYAREQGLDA 877

Query: 414 IVT 416
            +T
Sbjct: 878 FIT 880


>gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 528

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 160/534 (29%), Positives = 255/534 (47%), Gaps = 72/534 (13%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L      +++  +  +S +S+ ++   +F AI G   DG+ FI  A+ Q A  ++  +  
Sbjct: 2   LPNLKQLFQQHNVKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALVITDNKK 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++            ++ V++ +  L       Y K P+N+ AVTGT+GKSSV S++ Q  
Sbjct: 62  NIVIDK--------VIYVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQTY 113

Query: 138 QRSGLSSFQIGPTS-----TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              G  +  IG          +       LTT   +   K    L+  G+ +++ EASSH
Sbjct: 114 SLLGKKTASIGTIGGEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEASSH 173

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------- 239
           GLDQ RL  IK+    FT+  +DH+DYH T++ Y  AK++LF   L              
Sbjct: 174 GLDQARLGEIKVNIACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGDTE 233

Query: 240 ------------------------------------KESPAIIYADDAYSKEVMKRAHNA 263
                                                   AI+ +D    + V    HN 
Sbjct: 234 RRTAAYTSDRADSSTGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLHNH 293

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             + ++VG +G    + ++ +    Q +  +   ++++F  P+ G FQ  N L+AA    
Sbjct: 294 NIKFITVGKKGDLE-ITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAALSVH 352

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382
             G D   ++E L ++  V GR E          I+VDY+HT ++LE  L  ++ I    
Sbjct: 353 YTGFDFNKIIEILTQVKPVKGRMER----IDNTNIFVDYSHTPDALEKALTELKNIKLRD 408

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--F 439
            ++ VVFGCGG+RD+ KR IMG+IA  LAD  I+TDDNPR+E+P+ IR EII GI    +
Sbjct: 409 SKLSVVFGCGGNRDKTKRSIMGQIAAKLADTIIITDDNPRNENPKLIRTEIISGIDKADY 468

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            E  NR EAI+  I  L + D+L++AGKGHE   I+ + +K    D +++R+ +
Sbjct: 469 TEIANREEAIKYGINNLKQDDILLIAGKGHENYQIIGD-KKLPFDDAEVVRKCI 521


>gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
 gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
          Length = 492

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +   +     A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +           +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
 gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
          Length = 492

 Score =  291 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
 gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
          Length = 498

 Score =  291 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 137/488 (28%), Positives = 230/488 (47%), Gaps = 35/488 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAI-----VGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
             W ++       DSR ++ G IF+A+              F  +A+ QGA A++  +  
Sbjct: 15  ADWMKQSFQGFELDSRKVKPGQIFIALTSLSQPEKTV---QFAQKALEQGALAVISETEP 71

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP----ENILAVTGTSGKSSVASFV 133
            +           P LVV + R  +  +  +            ILAVTGT+GK++++  V
Sbjct: 72  DVS----------PNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTGTNGKTTISRLV 121

Query: 134 QQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            +     G +   +G T        + +  TT   + L  AL   +  G    S+EASSH
Sbjct: 122 AEFIMLQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQAGAEFASIEASSH 181

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL+Q RL+G  +    ++NL RDH+DYH T QAY  A+ +           A+I  DD +
Sbjct: 182 GLEQGRLNGCDIEIAGYSNLSRDHLDYHGTLQAY--AEAKSGLFRFESLKVAVINIDDEH 239

Query: 253 SKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           ++ ++   K        +     Q     ++ +    +     +     ++    PL G 
Sbjct: 240 AQIMLDAAKNNPAQPKILTYSTTQKADYQVQDIQYSISGATFKLKTASAEYIVNSPLLGH 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F + N + +  +    G +   ++  + +L   PGR + +    R     VDYAHT ++L
Sbjct: 300 FNIENLVASLIMAEQAGFELESLIATVPQLKGAPGRMQVLRDGER--LFVVDYAHTPDAL 357

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L  ++   S  +  VFGCGGDRD+GKRP+M + ALD +DIA++T DNPR+EDP +I 
Sbjct: 358 TQVLVTLKRHVSQNLWAVFGCGGDRDRGKRPLMTQAALDGSDIAVLTSDNPRTEDPAQIF 417

Query: 430 AEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           A++ +GI      + E  +R EAI+ A++     D++V+AGKGHE    + +G +    D
Sbjct: 418 ADMKNGIDFSGKTYHEIHDRREAIKFAVKHAQAGDIVVIAGKGHENYQEI-DGVRHWFDD 476

Query: 486 CDIIREIL 493
              ++  +
Sbjct: 477 VIEVQAAI 484


>gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Azoarcus sp. BH72]
 gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 501

 Score =  291 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 153/481 (31%), Positives = 229/481 (47%), Gaps = 25/481 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +++DSR +  G +F A  G+  DG  +I  AI +GA A++                  P
Sbjct: 21  GITADSRRVGPGAVFAAWPGHVTDGRRYIASAIERGAAAVLWEEGDGFHPGELP----VP 76

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              V   R+     A  +Y +    +    VTGT+GK++V  ++ +     G     +G 
Sbjct: 77  GFAVPRLRELAGALAHEIYDRPSARLWMAGVTGTNGKTTVTQWLARALGELGSRCGIVGT 136

Query: 150 TSTISSFAQDNRL-TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +         L TTP  + L   L+ L  +G    ++E SS GLDQ R++G++     
Sbjct: 137 LGSGFPDQLSASLNTTPDALELHATLARLLGEGAAAAAMEVSSIGLDQGRVNGVEFDVAV 196

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL RDH+DYH+T  AY  AK RLF   LP  S A+I  DDA+     +R   AG   +
Sbjct: 197 FTNLTRDHLDYHRTMDAYAEAKARLFA--LPGISRAVINLDDAFGLTQARRLVAAGQVDV 254

Query: 269 SVGYQ----------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                           + +   ++ A  +  Q ++   G+  D    +   F V N L  
Sbjct: 255 IGYTCVASNADAVPGARVLVADRLQASPSGLQFSLHWAGRQSDLQVRMVAPFNVSNLLAV 314

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR- 377
            G  +  G+     L  + +L+   GR + VG       I +DYAHT ++L  +L+ +R 
Sbjct: 315 IGALVMRGVAVEEALAVVGRLNPPEGRMQLVGGIGEPL-IVIDYAHTPDALAKVLEAVRG 373

Query: 378 --TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                 GR++ VFGCGGDRD GKRP+MG++A  LAD  +VT DNPRSEDP KI   I  G
Sbjct: 374 TVRSRGGRLVCVFGCGGDRDPGKRPLMGEVARQLADRVVVTSDNPRSEDPRKIIDAIAAG 433

Query: 436 IPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                +   +R EAIR A+      DV+V+AGKGHE    + +G++    D +  +  L 
Sbjct: 434 AGASADCIVDRAEAIRIAVGEAGPDDVVVLAGKGHEPYQEI-HGQRLPFSDVEQAKAALA 492

Query: 495 L 495
           +
Sbjct: 493 V 493


>gi|325954321|ref|YP_004237981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
 gi|323436939|gb|ADX67403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
          Length = 488

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 149/503 (29%), Positives = 239/503 (47%), Gaps = 32/503 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L  ++      +I  +           + E+  DSR  + G +FVAI G + DGH +
Sbjct: 1   MKQLTTILTNLS--IIKTIG----DAEGVLVGELIFDSRKAKKGDVFVAIKGTQTDGHSY 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I Q    G   IV              + N   ++V++    L + AS  Y    +N+  
Sbjct: 55  IEQVTEIGVSVIVCE------VLPEIQKENIVYVLVEDASIALGVMASNYYDNPTKNLQL 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++  S + ++  + G +S  +     +        + TTP  + L +    
Sbjct: 109 VGITGTNGKTTTTSLLYELFTKLGYASVLVSTIQIVVDGDIIPTQNTTPDIVTLNRIFRQ 168

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +G  +  +E SSHG+ Q+R+ G+     +FTN+  DH+DYH T Q Y  AK + F+E
Sbjct: 169 AVDKGCEYAFMEVSSHGIVQNRIAGLYFRVAAFTNITHDHLDYHITFQNYIQAKKKFFDE 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP  + A++  DD   + +++    +       G       + +               
Sbjct: 229 -LPASTKALVNLDDRNGRVMLQNTVASKHFFTLKGDAEFKGKILESRFDGMLL------N 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +F   L G+F  YN L+  G+   +G +   VL  L  L  V GRF+         
Sbjct: 282 FNQQEFWTNLIGQFNAYNLLLVYGIAHLLGQEDTEVLTILSVLGSVEGRFQ-TFHTQGDR 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            I VDYAHT ++LE +L  I  I +     I V GCGGDRD+ KRP M  IA   +D+AI
Sbjct: 341 VIIVDYAHTPDALENVLDTIGGIRTKNEQLITVVGCGGDRDKTKRPEMADIAARKSDLAI 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            T DNPR+E+PE I A++  G+        ++  +R EAI+TA++M  K D++++AGKGH
Sbjct: 401 FTSDNPRTENPEAILADMEAGVEPQFYDKTLKITDRKEAIKTALKMSQKHDIILIAGKGH 460

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           ET   + NG +    D ++ +E+
Sbjct: 461 ETYQEI-NGVRNHFSDVEVAKEL 482


>gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
 gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
          Length = 488

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 233/466 (50%), Gaps = 14/466 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +    +F A+ G   +G  ++   I  G +  VV +   LQ      R +  +
Sbjct: 29  LETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGCKVAVVPAELKLQ------RDDIEL 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  K L       +GK P  ++AVTGT+GKSS+  ++ Q+ +  G SS  +G    
Sbjct: 83  VSVADPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFYIAQLAKYIGFSSGLVGTFGV 142

Query: 153 IS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                  + + TTP  + + +AL  ++ +GV  V+ EASSH LDQ R++G+      F+N
Sbjct: 143 GPLDRLSEAKQTTPDLLSMHRALMKMAEEGVDFVAFEASSHALDQGRIEGVPFQTAVFSN 202

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH    +Y  A  +         S +I   DD Y+  + + A  + C   S  
Sbjct: 203 LSRDHLDYHGDMNSY--ALAKRRLFSFECVSHSIFCLDDGYAGFMAEGAARSSCHYYSEQ 260

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                 ++K++    +  +  +   G D     PL G F V NAL A         D A 
Sbjct: 261 DSRADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCFNVQNALAAFASLWYGVDDKAT 320

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           ++  L  L   PGR + V   +    + VD+AHT+++LE+ L+ ++  T+GR+I VFGCG
Sbjct: 321 LIRGLSTLTGAPGRMDKVQLPNAPL-VVVDFAHTADALEVALQAVKEHTNGRLICVFGCG 379

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEA 448
           GDRD+GKRP+M   A+  AD   +T DNPR+E  E+I ++++        F  + +R  A
Sbjct: 380 GDRDRGKRPLMMAAAMKNADYVWLTSDNPRTESIEQIFSDVLAQTNKDAAFSFELDRRMA 439

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           I  AI     +DV+++AGKGHET   +  G K    D +   + L 
Sbjct: 440 IHQAILSAGPEDVILIAGKGHETYQDIQ-GVKYHFNDKEEALKALE 484


>gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 495

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 220/473 (46%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++             +
Sbjct: 19  DVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+      ++ VTGT+GK+S    + Q     G  +
Sbjct: 74  PVPVDAIAVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +      +    +     
Sbjct: 194 FDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVVNLDDGFGRTLFASRDPVLR 253

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S  +    +  + +   HN     ++++G+      PL G F V N L  AG   
Sbjct: 254 AIGVSSRAHADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALW 313

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 314 ALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G       I
Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 433

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 434 VQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 492

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
          Length = 488

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 158/471 (33%), Positives = 251/471 (53%), Gaps = 16/471 (3%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V++DSR   +G +FVA+ G+++DG  ++  A+ +G   +V +  + L   +        
Sbjct: 24  DVAADSRRATSGGVFVAMAGSRDDGARYVADALEKGVAFVVAAPGHDLPAGTTAR----- 78

Query: 92  ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++ VD+ +  L   A+  +G       ++AVTGT+GK++V+  ++++ Q +G +   +G 
Sbjct: 79  LVAVDDPQAALGALAAARFGTETMAMPVVAVTGTNGKTTVSYLIERLAQAAGHTVGVLGT 138

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +        D  LTTP  + + + L+ ++  G T   +EASSH LDQ RL G+   A +
Sbjct: 139 VAYRWPGVVHDATLTTPDCLAIHENLAAMARSGCTLAVMEASSHALDQDRLAGLSFAAAA 198

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+    YF AK +LF   L +   A+   DDA+  +++     A    L
Sbjct: 199 FTNLTQDHLDYHKDMAVYFEAKAKLFRRYLARAETAVFNFDDAWGLKLLHEFPQAIGYGL 258

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +V   G    L      H ++   I     D  +    PLPG     N L A G+ +A+G
Sbjct: 259 TVPPTGFGRLLSGHVQHHGREGQDILAAYGDDSYAVATPLPGRHNAQNVLAACGVALALG 318

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +       +  H  PGR E +  N  G  ++VDYAHT ++LE +L   R  T+GR+ V
Sbjct: 319 WPAETFAALADC-HGAPGRLERIP-NPSGRAVFVDYAHTPDALENVLSAAREFTAGRLFV 376

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443
           VFGCGG+RD+ KRP+MG     LAD+A++T DNPR EDP  I  ++  G+      I + 
Sbjct: 377 VFGCGGNRDRAKRPLMGAAVARLADVAVLTSDNPRHEDPLAIIEDVKPGLKKARRAILEP 436

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +R  AI  A+  +  +DVLV+AGKGHET   + +  K    D  ++RE+ G
Sbjct: 437 DRRRAIELALSEMRPEDVLVIAGKGHETYQQIGD-VKYPFSDAVVVRELTG 486


>gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis OX99.30304]
          Length = 492

 Score =  291 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 219/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTLWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 513

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 151/494 (30%), Positives = 251/494 (50%), Gaps = 20/494 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNKEDGHLFIPQAIAQGAEA 70
           L+  +    ++ +E  + ++S DSR + AG +F+A+      ++     + QA+ +GA A
Sbjct: 14  LLQDVVAEGVELQEYMLTDISMDSRRVTAGGLFLALAKDEAERQ---KHLHQALDKGAFA 70

Query: 71  IVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           +++ +   L      + +   +    V N  +     A+R Y +  +++  +AVTGT+GK
Sbjct: 71  VLIDADKPLTQTETAMLNEAVVSAYPVKNLSQQAGSIAARFYQQPSQHMTVIAVTGTNGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +SV+ F+ Q+ +  G     IG       S  +   +TTP P+ + + L+    +G  +V
Sbjct: 131 TSVSQFIAQVLEADGKPCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFELEGCEYV 190

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +EASSH L+Q RL+ + +     TNL RDH+DYH T   Y  AK +     +   S A+
Sbjct: 191 VLEASSHALEQGRLNSVDINVAVLTNLSRDHLDYHHTMADY--AKAKQRLFEMGSVSRAV 248

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I A D++ + +M    +    +         +    +    +  Q  +++ G+      P
Sbjct: 249 INACDSFGRTLMNALRSDIQLLTYSSSDQADVSASAIQCHRDGMQFDLAIHGQQQKTTLP 308

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G F V NAL   G+ ++IG   +   + L +   V GR E  G + +   + +DYAHT
Sbjct: 309 VLGRFNVDNALATLGVLLSIGYQPSQARQALSQCRAVAGRMEAYGVDGQPM-LVIDYAHT 367

Query: 366 SNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            ++LE  L+ +R      G++  VFGCGGDRD+GKRP+MGKIA   AD  I+TDDNPR+E
Sbjct: 368 PDALEQALRTLRGHLNQQGKLWCVFGCGGDRDKGKRPLMGKIAEIEADEIIITDDNPRTE 427

Query: 424 DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           D + I  +I+ G         + +R  AI  AI      D+++VAGKGHE    + +  K
Sbjct: 428 DHQAIAEDILAGCQQPHAIRVELDRKVAISYAISHAAPNDIVLVAGKGHEAYQEI-DHIK 486

Query: 481 KMSVDCDIIREILG 494
               D  II+E+LG
Sbjct: 487 FPFSDTVIIKEMLG 500


>gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 506

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 235/504 (46%), Gaps = 34/504 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I +  P ++ +L + P +        + +DSR    G +FVA  G+  DG  FIPQA+AQ
Sbjct: 18  IRESVPHILERLGLAPGE--------LVNDSRRAAPGKVFVAYPGDARDGRDFIPQAVAQ 69

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA+ ++  +      +        P   V   +  +   A+ +YG+     +++ VTGT+
Sbjct: 70  GADGVLWEAD----HYQWDPALAIPNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-------TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           GK+SVA ++ Q     G  +  IG        T    +       TTP  I L + L+  
Sbjct: 126 GKTSVAHWIAQALSALGRKTAIIGTVGNGFPSTGDTPAALTPALNTTPDAIELQQRLARY 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G    ++E SSHGL Q R++G +      TNL RDH+DYH    +Y  AK RLF   
Sbjct: 186 RGEGAVACAMEVSSHGLAQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKARLFNWP 245

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +   A++  DDA+ + +         RV   G+Q   +  + +        + +  + 
Sbjct: 246 DLEW--AVLNVDDAFGQRL--EGETRPARVAGYGFQRGAVVARGLQLSQAGMHLALQTDW 301

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D +   PL G F   N L A    +   +        L ++    GR + +G  +    
Sbjct: 302 GDAEIDAPLLGRFNAANLLAALTALLVSDVKLDDACRALAQVTPPAGRMQTLGGEAHPL- 360

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDY+HT ++LE +L  +R I  G R+I VFGCGG+RD+GKRP+MG  A   AD   VT
Sbjct: 361 VVVDYSHTPDALEKVLATLREIAGGGRLICVFGCGGNRDKGKRPLMGAAAGRGADEIWVT 420

Query: 417 DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            DNPR EDP  I  +I  G+           +  R  AI  A+   +  DV+++AGKGHE
Sbjct: 421 SDNPRHEDPRAIIDDIRAGLAEAEAEGRVRVEAERARAIFEAVGGAHHGDVVLIAGKGHE 480

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               V  GE+    D  + R+ L 
Sbjct: 481 DYQEVA-GERLPFSDIAMARKALE 503


>gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
 gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
          Length = 493

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 155/468 (33%), Positives = 224/468 (47%), Gaps = 16/468 (3%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR +Q G +FVA  G   DG  +IP AIA GA  +   S      F+         L 
Sbjct: 29  MDSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSG---DGFAWRPEWQIANLG 85

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V + ++   L A++LYG      +   VTGT+GK+S++ ++ Q           IG    
Sbjct: 86  VPHLKQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVGN 145

Query: 153 ISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 ++   TTP+P+ +   L     QG   V++E SSHGLDQ+R+ G    +  FTN
Sbjct: 146 GFWGRLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIFTN 205

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L RDH+DYH +  AY  +K +LF     +   AII  DD + +E+          +   G
Sbjct: 206 LTRDHLDYHGSMAAYGASKAKLFYWQSLQH--AIINTDDEFGRELAAGLRADRPNLNVYG 263

Query: 272 YQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           Y         + +  A     QV         +    L G F   N     GL  A G  
Sbjct: 264 YGFNEQADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEGYS 323

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL  L ++    GR +   + +    + VDYAHT ++LE  L  +R I      +  
Sbjct: 324 LPDVLRVLAQIRPATGRMD-CISRAGRPLVVVDYAHTPDALEKALATLREIKPQGASLWC 382

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNR 445
           VFGCGG+RD+GKRP+MG  A+  AD  ++T DNPR E+P+ I A+I+  +P   + + +R
Sbjct: 383 VFGCGGNRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAVPQPALVEADR 442

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AI+TAI     QD++++AGKGHET   V  GEK    D +I    L
Sbjct: 443 RVAIQTAIRRAAPQDIVLIAGKGHETYQDVQ-GEKHHFSDFEIAEAAL 489


>gi|192292419|ref|YP_001993024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286168|gb|ACF02549.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris TIE-1]
          Length = 485

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 205/491 (41%), Positives = 274/491 (55%), Gaps = 21/491 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   +        ++               DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDLFSAEADIAAPAAALAIGGLA--------VDSRAVKPGDLFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A+   +     +         P + + N R  L+  A+R Y + PE I AV
Sbjct: 53  A-------AAVATGAVAVAGEHRPEGDLAVPFVQLSNARLALAQAAARFYPRQPEVIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G +S  IG       + +    LTTP PI L ++L  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAR 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T   Y NAK+RLF  L+ 
Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQ 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296
               A+I AD   S +V++ A   G R++++G  G     I L         QQ+T+   
Sbjct: 226 DGGAAVISADHDCSAQVIEAAGARGLRLITIGRNGDPGAGIKLIDATVEGFAQQLTVEHA 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK      PL GEFQ+ NALVAAGL I  G D+A     LE L   PGR + VG    G 
Sbjct: 286 GKRHRIKLPLVGEFQIENALVAAGLVIGTGGDAAASFAALEHLEGAPGRLDLVG-ARNGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD+ I+T
Sbjct: 345 PVFVDYAHKPDALAKTLQALRPYAKRKLVVVFGAGGDRDSGKRPLMGAIAAENADVVIIT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IR+ I+   PG  E G+R EAIRTAI  L   D LV+AGKGHET  IV 
Sbjct: 405 DDNPRSEDPATIRSAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464

Query: 477 NGEKKMSVDCD 487
           +       D D
Sbjct: 465 D-RVLHFSDHD 474


>gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
          Length = 492

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
 gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
          Length = 488

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 211/498 (42%), Positives = 281/498 (56%), Gaps = 18/498 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +   +   FPE     +  P       +  +++DSR ++ G++FVA+ G   DG  F 
Sbjct: 1   MSMATTLGALFPEAAGPEAGIP-------VTGLTADSRRVRPGFVFVAVPGTTMDGRSFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A+V             + +    L V + R+ L+L A+RL+ + PE I+AV
Sbjct: 54  TAAAAAGAVAMVTEGP-----RPEALPAEVAYLAVPDARRALALAAARLFARQPETIVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGKSSVA FV+Q+  R G  S  +G         A    LTTP P+ L + L  L+ 
Sbjct: 109 TGTSGKSSVADFVRQVLARLGRRSASLGTLGVVTGEGAAYGSLTTPDPVTLHETLDRLAG 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+T +++EASSHG++Q RLDG++L A +FTNLG DH+DYH T +AY  AK+RLFE LLP
Sbjct: 169 DGITDLAMEASSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLP 228

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             + AI+ AD   +  V       G  +++ G  G+ + L  V      Q +TI  EG+ 
Sbjct: 229 DAATAIVNADGPMADRVAASVRARGLPLVTTGLSGETLRLSAVETRGFAQALTIKAEGRA 288

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +    PL G FQV NALVAAGL +A          V+  L  L  VPGR E V     G 
Sbjct: 289 YQVDLPLVGGFQVENALVAAGLVLATPAGRGRLPEVVAALGHLAGVPGRLERVA-THNGA 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              VDYAH   +L  +L+ +R  T+GR++ V GCGGDRD+ KRP+MG+IA+  AD  IVT
Sbjct: 348 LCVVDYAHKPEALAGVLQALRPFTTGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVT 407

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRAEI+   PG  E G+R EAIRTA+  L   DVLVVAGKGHET  I+ 
Sbjct: 408 DDNPRSEDPAAIRAEILAAAPGAEEIGDRAEAIRTAVRGLGPGDVLVVAGKGHETGQIIG 467

Query: 477 NGEKKMSVDCDIIREILG 494
           N       D D +   + 
Sbjct: 468 N-RTLPFSDRDAVLSAIE 484


>gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 509

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 155/496 (31%), Positives = 235/496 (47%), Gaps = 21/496 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           DF +LI+   I         I+ V  DSR ++ G+ F+A+ G+  DG+ +I +AI  GA 
Sbjct: 2   DFFQLIDGAEILSCSG-NAGIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAV 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           AIV  SA  +       R      +  + R+ LS  ++  Y    E   I  VTGT+GK+
Sbjct: 61  AIVTDSATEIP------RPGVAWAICAHGRRALSRLSANFYKHPAEKLAITGVTGTNGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    +  + + +G  +  IG      +        TTP P+ L +      ++G T   
Sbjct: 115 TTTYILDSLLRHAGRKTAMIGTVEYHIADRVIPAPHTTPEPLELNQIFREALNEGATEAV 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R+ GI      FTNL RDH+D+H T ++YF +K  LF+    +     I
Sbjct: 175 MEVSSHALAQERVFGIPYDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGCGTEPPRVGI 234

Query: 247 YADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D    ++ MK A+    +V + G+     H +         +  +           P
Sbjct: 235 INRDDEWAEKFMKVANKHCDKVYTYGFAAGDFHAENAEMTSTGTRFDLVTPEGRVPIFSP 294

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+  V N L AA   +  GI    + E +  +   PGRFE V        + VDYAHT
Sbjct: 295 LIGKVNVLNLLAAAAAAMERGIHLDSLAESITHIVRPPGRFERVSAGQ-PFTVIVDYAHT 353

Query: 366 SNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            ++L  + K  R        GR+I +FGCGGDRD+ KRP+MGK A + +D+ ++T DNPR
Sbjct: 354 DDALRNVTKLARDFVQQAGGGRVITLFGCGGDRDKTKRPLMGKAAGEGSDLVVLTSDNPR 413

Query: 422 SEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           SEDP+ I  +++ G+      FI + +R +AI  A+      DV+++AGKGHE       
Sbjct: 414 SEDPQAIINDVLPGLAQTPIKFIVEPDRRKAIGIAVANARLGDVVILAGKGHEKTQTTRE 473

Query: 478 GEKKMSVDCDIIREIL 493
           G      D  +  E L
Sbjct: 474 GV-FPFDDAQVALETL 488


>gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID18]
 gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
          Length = 492

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida W619]
 gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619]
          Length = 496

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 152/491 (30%), Positives = 225/491 (45%), Gaps = 24/491 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
             +F    R+  I E++ DSR ++AG +F+A+ G K DG   I  A+         + AY
Sbjct: 7   SKLFAHASRDPLIRELTLDSRAVRAGDLFLAVPGAKVDGRDHISDAL----ARGAAAVAY 62

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
             Q       ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q
Sbjct: 63  EQQGTHVLPITDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQ 122

Query: 136 ICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                G     IG   T      Q  RLTTP PI +   L  L   G   V++E SSH L
Sbjct: 123 ALDALGQRCGLIGTLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSHAL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q R+  ++      TNL RDH+DYH + +AY  AK +LF     +         D    
Sbjct: 183 EQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPGLRCQVV---NLDDGFG 239

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---------GKDFDFLFP 305
             +         V  +  +     L+   A    ++     +           +      
Sbjct: 240 RRLAADFARRPSVDHIETRLLSYSLENSDASLYCREAKFDDDGVRAIIVTAQGERTLRSQ 299

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F + N L A    +A+      +L+   +L    GR + +G   +   + VDYAHT
Sbjct: 300 LLGRFNLSNMLAAVATLMALDYSLDEILKVTPQLQGPVGRMQRLGGGEKPL-VVVDYAHT 358

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP
Sbjct: 359 PDALEKVLQALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDP 418

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I  +I  G            R EAI   I      DV+V+AGKGHE    + NG++  
Sbjct: 419 QAIFNDIRPGFARPADVEFIAGRGEAIAHLIASAAASDVIVLAGKGHEDYQEI-NGQRHD 477

Query: 483 SVDCDIIREIL 493
             D     + L
Sbjct: 478 FSDLVEAEKAL 488


>gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Neisseria meningitidis H44/76]
 gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis CU385]
 gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis H44/76]
          Length = 492

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 144/470 (30%), Positives = 218/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  V GT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  A+R A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAVRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 519

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 163/505 (32%), Positives = 245/505 (48%), Gaps = 28/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  +DL+ ++  E++   +    +     I +V+ DSR +  G +FVAI G   DGH F+
Sbjct: 26  MNYRDLLTEE--EILEVRNGDRTEA----ITDVAYDSRRVGPGAMFVAIFGFATDGHRFV 79

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
             AI QGA  IV  +  +          +   L V + R+ L   ASR +G   E I   
Sbjct: 80  EAAIEQGAAVIVHQADLARYH------DDVVYLKVTDCRRLLGHIASRFFGHPSEKITVT 133

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSY 176
            +TGT+GK+S   F+  I + +G    ++G            +   TT         ++ 
Sbjct: 134 GITGTNGKTSSTYFLTGILRAAGKKCARMGTIDNQIGDAVLDNKGRTTSESRDTQAFIAE 193

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G + + +EASS  LD  RL  +      FTNL +DH+DYH+T +AYF AK RLF++
Sbjct: 194 AVAAGCSDLVMEASSQALDLDRLTDVHFDYALFTNLTQDHLDYHKTFEAYFEAKARLFDQ 253

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTI 293
               E  AII  DD + ++++ R      ++  + Y        ++ A+         T+
Sbjct: 254 ---TEKAAIINRDDPWGRKLINRIRERHPKLKIITYGEDPAADYRLSAVDCTTGGSTFTL 310

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +       + G F VYNA+         GID A +   L    VV GR E + TN 
Sbjct: 311 QAGDEKETIFLDVLGRFMVYNAVGTIIAAREQGIDWAAIKAALADAPVVEGRMERIKTNL 370

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I VDYAHT ++LE +LK ++ +  GR+I VFGCGGDRD GKRP+MG IA   AD +
Sbjct: 371 -DFDIVVDYAHTPDALENLLKTVKELARGRVIAVFGCGGDRDHGKRPLMGAIAAKEADFS 429

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           ++T DN RSEDPE I  +I   +      +    +R EA   A+    K DV++ AGKGH
Sbjct: 430 VLTSDNSRSEDPEAILDDIEAAVRPITDQYTRIADRREATVYALTHARKDDVVIFAGKGH 489

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E      NG +    +  +I +++ 
Sbjct: 490 EKTETSRNGVRPYY-EKAVILDVIE 513


>gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA2]
          Length = 499

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+      +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +        DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++          +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L    V PGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G I      R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483


>gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL074PA1]
 gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA2]
 gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA1]
 gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA2]
 gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA1]
 gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA2]
 gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA1]
 gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA2]
 gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL007PA1]
 gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL056PA1]
 gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA3]
 gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA2]
 gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA1]
 gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA1]
 gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL045PA1]
 gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA2]
 gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA1]
 gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA2]
 gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA3]
 gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL078PA1]
 gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA2]
 gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA3]
 gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA1]
 gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL038PA1]
 gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA2]
 gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL097PA1]
 gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA3]
 gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA2]
 gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA2]
 gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA1]
 gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL020PA1]
 gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL099PA1]
          Length = 499

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+      +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +        DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++          +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L    V PGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G I      R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483


>gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
          Length = 492

 Score =  290 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
 gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
          Length = 498

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 150/502 (29%), Positives = 238/502 (47%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++    PE++   +  P    E  I  ++ +S+ +    +FVAI G K DGH +I
Sbjct: 6   MKLNCILED--PEIVEVRNNNP----EIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI++GA  ++              + +   + V N R  L   +SR YG   E  +I 
Sbjct: 60  GDAISRGAILVIYEHDLDE------YQDDIMYVKVKNARHMLGTMSSRFYGHPSEALSIT 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176
            VTGT+GK+++   ++ I Q+ G     IG  +         +   TTP  + + + +S 
Sbjct: 114 GVTGTNGKTTITHMLKSIFQKDGRKCGLIGTINNQIGDEIIDNAGRTTPDSLEVQEIISE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G  ++ +E SSH LD  R++G+    G F+NL +DH+DYH+T + YF AK +LF  
Sbjct: 174 MVEAGCQNLVMEVSSHALDLDRVNGVAFDYGIFSNLTQDHLDYHKTFENYFEAKAKLFTY 233

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                       DD + K++  R                    + + +       + T+ 
Sbjct: 234 TSKANII---NCDDVWGKKLYDRCAQKKGVAVYSYGLNPECDFYARDMKYSIEGTRYTLV 290

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +  + +    +PGE  VYN++ A    +  GI   ++ E L  +  V GR E +     
Sbjct: 291 TKDGEEEIFISIPGEVMVYNSMAAIINALLEGISIEVIKEALASMSGVEGRMERL-DLDT 349

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I +DYAH+ +SLE +LK+++T+  G++ +VFGC GDRD+ KRPIMG+IA + AD  I
Sbjct: 350 EFDIIIDYAHSPDSLERLLKSVKTMYDGKVYLVFGCNGDRDKEKRPIMGRIAGEFADHVI 409

Query: 415 VTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           VT DNP SEDP+ I   +   +            R +AI  A  +    DVLV+AGKGHE
Sbjct: 410 VTSDNPASEDPQSIIDTVAAAVAEKTDACETVLRRWDAIYYAATLPKAGDVLVLAGKGHE 469

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
                   E     + +   E 
Sbjct: 470 K-QETMKDENLYYNEWETAEEA 490


>gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 486

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 145/459 (31%), Positives = 219/459 (47%), Gaps = 19/459 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V SDSR +  G IFVA+ G K  G+ FIP+A+ +GA  +V S                 +
Sbjct: 17  VRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGAAFVVASEPAGQDR----------V 66

Query: 93  LVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L  +N    L   A   +G  +    ++ VTGT+GK++ +  ++ I    G  +  +G  
Sbjct: 67  LHHENPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIFTSIGYKTGVLGTV 126

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +            TTP  + L + L+ + + GV  V +EASSH LDQ RL GI +    F
Sbjct: 127 NYRWPGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHALDQKRLAGIDIHVAVF 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T L RDH+DYH   + YF AK +LF    P+     +   D      +            
Sbjct: 187 TGLSRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPHGRDLAGEAPRVMGYGL 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  +    V +  +   +  S +G+ +     LPG     N L A G  I +G++ 
Sbjct: 247 QKNFSPELQGHLVQSTASGLVMECSHQGRSWTISCSLPGIHNAQNLLAAQGAGICLGLEP 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
               + L+ L  +PGR E V     G  IYVDYAHT ++LE +   ++ ++  R+ V+FG
Sbjct: 307 E-HFDCLKDLGPIPGRLEKVP-APEGINIYVDYAHTPDALENVCLALKELSFSRLAVLFG 364

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRI 446
           CGGDRD+GKRP M +     AD   +T DNPR E+P +I  +I   + G P    + +R 
Sbjct: 365 CGGDRDRGKRPEMARAVAAHADAVFLTSDNPRFEEPGEIIKDILPGLAGHPCVEVEPDRR 424

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +AI+ A+ +L   + L+VAGKGHE    +  G +    D
Sbjct: 425 QAIQKAVSLLAPGEALLVAGKGHEDYQEI-RGVRHDFSD 462


>gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alistipes sp. HGB5]
          Length = 485

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 143/502 (28%), Positives = 228/502 (45%), Gaps = 31/502 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L++L+       ++             +  +  DSR +  G  F A+ G + DGH F
Sbjct: 1   MKTLKELLRNTPVTALHGDDSAA-------VAGLVYDSRAVGPGDCFFAVRGTQNDGHDF 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           IP            ++A   +       ++   + V +    L+  A+  Y        +
Sbjct: 54  IPA------AVAKGAAAVVCERLPEQTAADVVYVAVPDAAGALADMAAAFYDHPSRALKL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++  + +  + +  G  +  I      +         TTP P+ L   +  
Sbjct: 108 VGITGTNGKTTTVTLLYDLVRALGHKAGLISTVVYKVGERTVGATHTTPDPVRLNAMMRE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           ++ +G  +  +E SSH + Q R  G+    G F+N+  DH+DYH+T   Y  AK  LF +
Sbjct: 168 MADEGCEYCFMECSSHAIVQERTRGLHFAGGIFSNITHDHLDYHKTFAEYIRAKK-LFFD 226

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L KE+ A+  ADD   + +++    A               + ++       ++     
Sbjct: 227 SLSKEAFALTNADDKNGRVMVQNTAAAIHTYSLRSMADFRCKIVEMHPDGMLLRIDGQEV 286

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                  F        YN L   G  + +G D    L     LH V GRFE V  ++ G 
Sbjct: 287 WVGLVGRFN------AYNLLAVYGAAVLLGFDRGETLRAASMLHPVSGRFELVR-SANGV 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              VDYAHT ++LE +++ I  I +   ++IVV GCGGDRD+ KRP M +IA+  AD A+
Sbjct: 340 TAVVDYAHTPDALENVIRTIEEIRTPAQKLIVVCGCGGDRDRTKRPEMAQIAVRYADTAV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            T DNPR E PE I  ++  G+     F+   +R EAIRTA+ +    D+L+VAGKGHET
Sbjct: 400 FTSDNPRHESPEAILDQMAAGLEPGARFLRIADRAEAIRTAVMLSQPGDILLVAGKGHET 459

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             IV +  K    D + +R+  
Sbjct: 460 YQIVGD-VKHPFDDREEVRKAF 480


>gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
 gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
          Length = 509

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 161/520 (30%), Positives = 240/520 (46%), Gaps = 43/520 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL     P       I       R+IN +  DSR +++G +F A+ G   DGH FI
Sbjct: 1   MRLEDLARVVDP-------IAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A  +GA A+V+                   + V + R  +S  A+  YG+  +   ++
Sbjct: 54  ASARERGAVAVVLEDE-------TRAPCGMEWIRVGDARLAMSRMAALFYGQPTDGVPVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I  R+G+ +  +G  S    S       TTP  + L   +  L
Sbjct: 107 GITGTNGKTTTTYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
             +G   V +E SSH L+Q R+D  +     FTNL RDH+DYH+  ++YF +K RLF   
Sbjct: 167 VDEGAKAVVMEVSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTEL 226

Query: 236 --ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 K   A     D      +     A      +         + V    +    T+
Sbjct: 227 VAPDGVKPRRAAAINRDDSYGARLVETAVAPVISYGLAADAAV-RAENVVFSVDGIAGTL 285

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F   L G F +YN L A    + +G+   ++L  +E    VPGR E V  N 
Sbjct: 286 VTPFGTAPFHSHLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVH-NE 344

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  + VDYAHT ++LE +LK +  + +GRII VFGCGGDRD+GKRP+M +I+   + + 
Sbjct: 345 RGVTVLVDYAHTGDALENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLT 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAIE 454
           IVT DNPR+E+P  I  E++ GI                    GF    +R +AIR A  
Sbjct: 405 IVTSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAAT 464

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +    D++++AGKGHE   I+   EK    D +       
Sbjct: 465 VAVAGDIVLLAGKGHEDYQIIGT-EKFHFDDREEAIAAFR 503


>gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
 gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
          Length = 488

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 232/476 (48%), Gaps = 17/476 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
            +    +++DSR +QAG +F+A  G   DG  +I QA+  GA A+V        +    +
Sbjct: 8   NKSFTSITADSRKVQAGSLFLAYPGLHNDGRQYIGQAVQAGAAAVVWEQEGFTWNADWQV 67

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +    L V + ++ +   A+  Y        ++ VTGT+GK+SV+ ++ Q     G  +
Sbjct: 68  SN----LAVQDLKQQVGGIAAEFYQNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKT 123

Query: 145 FQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        AQ +   TTP  I L   L+    Q    V++E SSHGLDQ R++G+ 
Sbjct: 124 AVLGTIGNGFLGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRVNGVA 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TNL RDH+DYH+T +AY  AK +LF         AI+  DDA+ K ++   +  
Sbjct: 184 FDVAVLTNLSRDHLDYHETMEAYAAAKQKLFAW--EGLITAIVNTDDAFGKSLVSALNAQ 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L+ G     +    +        + I+          P+ G F  YN L      +
Sbjct: 242 DKPCLTYGLTSADVQGSDLKLHDTGLTMQINTPQGHALLSAPVLGRFNAYNVLAVLATLL 301

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
           A+ +     LE + K+  V GR +  G       + +DYAHT ++LE +L  ++      
Sbjct: 302 ALKVSLPDSLEAIAKIKPVLGRMQQFGGGDLPL-VVIDYAHTPDALEKVLSTLKEQIDLA 360

Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
               ++I VFGCGGDRD GKRP+MG IA  LAD   VT DNPRSE+P  I A ++  +  
Sbjct: 361 ASSVKLICVFGCGGDRDAGKRPLMGNIASKLADQVFVTSDNPRSENPAAIIAAVVSEMKA 420

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           G++   +R  AIR AI+  N  D+++VAGKGHE    + +G K    D  I +  L
Sbjct: 421 GYVVDADRANAIRAAIQGANSGDIVLVAGKGHENYQEI-SGVKYPFDDALIAQAAL 475


>gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 506

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 134/514 (26%), Positives = 220/514 (42%), Gaps = 35/514 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +  K   E +           + ++ ++  DSR I    +FV +VG   DGH +I
Sbjct: 1   MKLSKICEKIKYECLQGS-------MDAEVRDIIYDSRKIAKETMFVCMVGAVTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+ +GA  IVV       + +A I     +L V++ R  L+L ++ L+    E ++ +
Sbjct: 54  PDAVEKGASVIVVERD----EEAAQIPGTITVLKVESARYALALMSAALFDYPAEKLITI 109

Query: 121 T--GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
              GT GK++    ++ + + +G     IG    +       ++ TTP    L +  + +
Sbjct: 110 GLTGTKGKTTTTYMIKNVLEAAGKKVGLIGTIGAMIGDEKIPSKNTTPESYELHRMFASM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SS GL   R  GI    G FTNL  DHI      +     +    + +
Sbjct: 170 VEAGCEYAVMEVSSQGLKMDRTAGIMFDYGVFTNLSPDHIGP---NEHASFEEYLECKSM 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-----------VCAIH 286
           L ++    I   D    E +   H        V    +   L K           +    
Sbjct: 227 LFRQCKIGILNADDEHSEAVAANHTCEIHSFGVEDNNEKTFLGKPLDLVAADLGFIKENG 286

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                       D +    +PG F VYN+LV   +C   GI    +L+ L K+ V  GR 
Sbjct: 287 KLGMYFHVKGCMDCEARVHIPGRFSVYNSLVTMLVCHLAGISDQAILDGLNKVQV-KGRV 345

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +  +     + +DYAH   S   +L  +      R+I V+G GG+R + +R  MG++ 
Sbjct: 346 EMLPVSK-DYYLIIDYAHNEVSTRSVLTTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVT 404

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
            ++AD+ ++T DNPR E+   I  +I  G+      +IE  +R EAI   +      D++
Sbjct: 405 GEMADLCVLTCDNPRDEEIRDINNDIKVGLAKSNGKYIEIDDRKEAIAYCMVNAQPGDMI 464

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           V+ GKGHE    +  G K    + + + EIL  I
Sbjct: 465 VLLGKGHEDYQEI-RGVKYHFDEREAVAEILEEI 497


>gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 492

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 217/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +   +     A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID332]
 gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
 gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 492

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 149/468 (31%), Positives = 218/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N     GL  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIGLLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|238898850|ref|YP_002924532.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466610|gb|ACQ68384.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 502

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 154/500 (30%), Positives = 236/500 (47%), Gaps = 17/500 (3%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
            L DL        ++   L + P       I  ++  S  +  G +FVAIVG++ DG  +
Sbjct: 5   NLCDLFASTPWEQQIKEALRLVP-----ITIKGITLKSDEVTTGDLFVAIVGHETDGRHY 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQD-FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           IPQA++QGA AI+  +   + D  S       PI+ + N  ++LS  A   Y       N
Sbjct: 60  IPQALSQGAGAILAEAEGVVNDDVSVDQIQGVPIVYLFNLNQYLSQLAGEFYHHPASQLN 119

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK++    + Q     G  S  +G            N+ TT S I + + LS
Sbjct: 120 LVGITGTNGKTTNTQLLAQWTMALGEVSAVLGTLGNGLLRQLSSNQNTTASAIEVQQILS 179

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DYH     Y  AK  LF 
Sbjct: 180 NMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHGDMANYEIAKKSLFL 239

Query: 236 ELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +   K     +       +  E+      +    +  G QG ++  +K+    N   +  
Sbjct: 240 DHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWLSAQKIQYHENGALIFF 299

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  +   PL G F V N L+     +A+      +L+   KL  +PGR E      
Sbjct: 300 DSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKLQPIPGRMEVFKKVG 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKRP+MGKIA  LAD  
Sbjct: 360 RPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKRPLMGKIAETLADQM 418

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           ++TDDNPR+E P+ I A+I+ G+          +R EAI   +     +DV+++AGKGHE
Sbjct: 419 VITDDNPRTESPKMITADILKGVLKTDRASVIQDRTEAITHILNQAMPEDVILIAGKGHE 478

Query: 471 TVHIVTNGEKKMSVDCDIIR 490
               + + +   S    + R
Sbjct: 479 VYQFIEHQKLDYSDRATVAR 498


>gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 487

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 238/503 (47%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+  + +  P       I  +   E+++++++SDSR    G +FVA+ G   DGH +I
Sbjct: 1   MKLEQYLSELRP-------IAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           PQA  QG  A VV       D           + V +T + L+  AS  YG    ++  +
Sbjct: 54  PQAYTQGCRAFVVE------DLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ + ++ ++ G  +  +    + +   ++    TTP P+ L      +
Sbjct: 108 GVTGTNGKTTVATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH   Q R+  +    G FTNL RDH+DYH +   Y  AK   F + 
Sbjct: 168 ADAGCEYAFMEVSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKK-SFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  ++ A++ ADD     +++      C             + +         +      
Sbjct: 227 LGAQAFALVNADDKNGLVMVQNTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVF 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F        YN L   G    +G D   VL  L +L  V GRF+   T+  G  
Sbjct: 287 VRLVGDFNA------YNLLCVYGASCELGQDREEVLRILSELTSVDGRFQ-TFTSKDGYV 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAHT ++L  +L  IR +  S ++I V G GG+RD+GKRPIM K A   ++  I+T
Sbjct: 340 AIVDYAHTPDALVNVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILT 399

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR E+P++I  E+  G+        +   +R EAIRTA  +  K D +++AGKGHET
Sbjct: 400 SDNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G K    D +++ + + 
Sbjct: 460 YQEI-RGVKHHFDDREVVCDAMS 481


>gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha153]
          Length = 492

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 217/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           XB6B4]
          Length = 516

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 139/523 (26%), Positives = 228/523 (43%), Gaps = 44/523 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+     E +           +  I ++   S  ++ G +FV I G   DGH +I
Sbjct: 1   MRLDQLLKHFSYESVQGSH-------DLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSA---------------YSLQDFSATIRSNTPILVVDNTRKFLSLF 105
             A+  GA A+VV  +                 ++           ++ V +TR+ L+  
Sbjct: 54  MDAVKAGAFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQI 113

Query: 106 ASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRL 162
           ++  Y    +   I+ +TGT GK++ A     I + +G  +  +G   T +    +    
Sbjct: 114 SAAFYDYPAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGH 173

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TTP    L + L+ + S G     +E SS G+   R++GI    G F N+  DHI     
Sbjct: 174 TTPESSDLQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP--- 230

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------VGYQ 273
            +    A+    +  L ++  A I   D  + E +   H       S          G +
Sbjct: 231 GEHASFAEYLYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQK 290

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +  +   ++   +  +        +FL  +PG F V NAL A  +     I   +V 
Sbjct: 291 ADIVAERITFSMKEGRLYSHFFTDGKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVK 350

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L++   VPGR E V  +       VDYAH   SL  +L  +R    GR++V+FGCGG+
Sbjct: 351 DALQR-QTVPGRCENVRISD-KFVFLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGN 408

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           R + +R  MG+ A  LAD  I+T DNPR EDPE I  +I  GI G    +I   +R  A+
Sbjct: 409 RSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAV 468

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             A +   + D++V+AGKGHE    +  G +    D +++++ 
Sbjct: 469 AYAFDHAREGDIIVLAGKGHEDYQEIG-GVRYPMEDKELVKKA 510


>gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
 gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
          Length = 487

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 238/503 (47%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+  + +  P       I  +   E+++++++SDSR    G +FVA+ G   DGH +I
Sbjct: 1   MKLEQYLSELRP-------IAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           PQA  QG  A VV       D           + V +T + L+  AS  YG    ++  +
Sbjct: 54  PQAYTQGCRAFVVE------DLPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++VA+ + ++ ++ G  +  +    + +   ++    TTP P+ L      +
Sbjct: 108 GVTGTNGKTTVATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +  +E SSH   Q R+  +    G FTNL RDH+DYH +   Y  AK   F + 
Sbjct: 168 ADAGCEYAFMEVSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKK-SFFDG 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  ++ A++ ADD     +++      C             + +         +      
Sbjct: 227 LGAQAFALVNADDKNGLVMVQNTRARVCTYALKSMANYRAKIVERHIDGMDMYMDDREVF 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F        YN L   G    +G D   VL  L +L  V GRF+   T+  G  
Sbjct: 287 VRLVGDFNA------YNLLCVYGASCELGQDREEVLRILSELTSVDGRFQ-TFTSKDGYV 339

Query: 358 IYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAHT ++L  +L  IR +  S ++I V G GG+RD+GKRPIM K A   ++  I+T
Sbjct: 340 AIVDYAHTPDALINVLDTIRPLAKSHKVITVVGAGGNRDKGKRPIMAKEAARRSERLILT 399

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR E+P++I  E+  G+        +   +R EAIRTA  +  K D +++AGKGHET
Sbjct: 400 SDNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKGHET 459

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G K    D +++ + + 
Sbjct: 460 YQEI-RGVKHHFDDREVVCDAMS 481


>gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
 gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
          Length = 497

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 135/503 (26%), Positives = 224/503 (44%), Gaps = 31/503 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL DL+ K   + +           +++I  ++ DSR  + G +F  I G   DGH +  
Sbjct: 10  KLADLLEKLEYQCLQGT-------MDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAK 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
               +GA  ++V     + +          ++ V+N+R  ++  ++  +G   E +  + 
Sbjct: 63  DVAEKGAAVLIVQDKVEVPE-------EVTVIQVENSRYAMACISAAWFGHPAEKLKTIG 115

Query: 122 GTSGKSSVASFVQQICQRS--GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
            T  K    +           G  +  IG   TI       +  TTP    + K  + + 
Sbjct: 116 ITGTKGKTTTTYLVKSILENAGHKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   V +E SS GL  HR  G +   G FTN+  DHI      +    A     + LL
Sbjct: 176 EAGCDSVVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGP---NEHKDFADYLHCKALL 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    I+  DA   + +   H           +      +    +  K  + I+ + K
Sbjct: 233 FKQCKVGIFNADADHLDEILEGHTCQVETFGFSEKADL-RAENTKLVTGKGTLGIAYDVK 291

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +F     LPG F VYN+L A  +C   G+    + + L++  V  GR E V  +   
Sbjct: 292 GLMNFPVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKV-KGRIEMVKVSDE- 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 350 FTLMIDYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTII 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P++I  +I  GI      ++E  +R EAI  AI      D++V+AGKGHE 
Sbjct: 410 TSDNPRDEEPQEIIDDIKIGIGKTNGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKGHED 469

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G+K    +  +I+EIL 
Sbjct: 470 YQEIK-GKKYPMDERVLIQEILE 491


>gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 495

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 218/473 (46%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +  DSR +  G  FVAI G    G  F+ QA A GA A++             +
Sbjct: 19  DVQVSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQARANGATAVLFEPPA-----PDGL 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+      ++ VTGT+GK+S    + Q     G  +
Sbjct: 74  PVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +      +          
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFASLDPVLR 253

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S  +    +  + +   HN     +++ G+      PL G F V N L  AG   
Sbjct: 254 AIGVSSRAHADASVSAQALQLDHNGINFALNIRGEVHPVHSPLLGRFNVDNLLAVAGALW 313

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 314 ALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+I+ G       I
Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDAIVADILRGFARPDAAI 433

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 434 VQRDRAAAIHQAIAMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens KN400]
          Length = 509

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 161/520 (30%), Positives = 240/520 (46%), Gaps = 43/520 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL     P       I       R+IN +  DSR +++G +F A+ G   DGH FI
Sbjct: 1   MRLEDLARVVDP-------IAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A  +GA A+V+                   + V + R  +S  A+  YG+  +   ++
Sbjct: 54  ASARERGAVAVVLEDE-------TRAPCGMEWIRVGDARLAMSRMAALFYGQPTDGVPVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    V+ I  R+G+ +  +G  S    S       TTP  + L   +  L
Sbjct: 107 GITGTNGKTTTTYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDL 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE-- 235
             +G   V +E SSH L+Q R+D  +     FTNL RDH+DYH+  ++YF +K RLF   
Sbjct: 167 VDEGAKAVVMEVSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTEL 226

Query: 236 --ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 K   A     D      +     A      +         + V    +    T+
Sbjct: 227 VAPDGVKPRRAAAINRDDSYGARLVETAVAPVISYGLAADAAV-RAENVVFSVDGIAGTL 285

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F   L G F +YN L A    + +G+   ++L  +E    VPGR E V  N 
Sbjct: 286 VTPFGTALFHSHLLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGRLERVH-NE 344

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           RG  + VDYAHT ++LE +LK +  + +GRII VFGCGGDRD+GKRP+M +I+   + + 
Sbjct: 345 RGVTVLVDYAHTGDALENVLKTVSELATGRIITVFGCGGDRDRGKRPVMAEISGRYSHLT 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTAIE 454
           IVT DNPR+E+P  I  E++ GI                    GF    +R +AIR A  
Sbjct: 405 IVTSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAAT 464

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +    D++++AGKGHE   I+   EK    D +       
Sbjct: 465 VAVAGDIVLLAGKGHEDYQIIGT-EKFHFDDREEAIAAFR 503


>gi|300690336|ref|YP_003751331.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
 gi|299077396|emb|CBJ50021.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
          Length = 514

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 161/507 (31%), Positives = 231/507 (45%), Gaps = 31/507 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE----DGHLFIPQ 62
           I      +++ L        +     ++SD+R ++AG +FVA V        DG   IPQ
Sbjct: 12  IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKAGDVFVAYVLGNVRQHGDGRPHIPQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119
           AI  GA A++  +   +    A +R    IL VD+  +     A++ Y         ++ 
Sbjct: 67  AIEAGASAVLAEAHGYVVPADAPLR----ILPVDDLAELAGPLAAQWYAVPGPDALRVIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S + ++ Q   R G     +G   T           TTP  I L  +L+ L 
Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLAELH 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL- 237
             G   V++E SSHGL+Q R DG +     FTNL +DH+DYH T   Y  AK RLF    
Sbjct: 183 RAGARAVAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPG 242

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                + ++  A +         +    +       +    G ++    V          
Sbjct: 243 LRAAVINRDDAAGVRLLTGLRAGIEAIEYGIDGEAAAQRGAGHWLRATNVRVHRTGTTFD 302

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I           P+ G F V N L   G+ +  G+     +  LEKL  V GR E  G  
Sbjct: 303 IDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFG-G 361

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             G  + VDYAHT ++LE  L+ +  IT    GR+  VFGCGGDRD GKRP MG IA  L
Sbjct: 362 EDGPLVVVDYAHTPDALEQTLRALAPITEARAGRLWAVFGCGGDRDPGKRPQMGAIAERL 421

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   ++T DNPRSEDP++I   I  G+       +  +R  AI  A+   +  DV+VVAG
Sbjct: 422 AQHVVLTSDNPRSEDPQQILDMIADGMEDPYAATQIEDRAAAILHAVRHADAHDVIVVAG 481

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE+   +  G K+   D + +R  L
Sbjct: 482 KGHESTQEIG-GRKRPFSDQEHVRLAL 507


>gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas europaea ATCC 19718]
 gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas
           europaea ATCC 19718]
          Length = 521

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 143/493 (29%), Positives = 226/493 (45%), Gaps = 32/493 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + K+  + +DSR ++ G  F+A  G + D    IPQAIA+G  AI+       Q FS   
Sbjct: 23  DVKVRHLVADSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAIIWEK----QGFSWKP 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               P L V   R      AS  YG       ++ +TGT+GK++ + +  Q     G  +
Sbjct: 79  EWKIPNLGVAGLRHEAGKIASEAYGHPSRHLWLVGITGTNGKTTCSQWYAQAMAALGKKT 138

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG            +  TTP  +YL + ++    QG + + +EASSHGL Q RL G +
Sbjct: 139 AVIGTLGHGFPGALYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEASSHGLSQDRLIGSE 198

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI---------IYADDAYSK 254
                 TNL RDH+DYH +  AY  AK +LF     + +                     
Sbjct: 199 FAVAVLTNLTRDHLDYHDSMDAYAAAKAKLFFWEGLQYAVLNLDEVLGVELSQQLAGKDL 258

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            ++        +        K ++   +     +    +    +       + G +  YN
Sbjct: 259 SIIGYGFKQPRQTAQTAGNQKILYGSNLQFTTQQIGFDVEFCNRYASLQCNVTGRYNAYN 318

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L      +A  ID    +  L ++  +PGR E +G  ++   + VDYAHT ++L  +L 
Sbjct: 319 LLAVLAALLASNIDLDDAITALRQVQPIPGRMEKLGGGNQPV-VIVDYAHTPDALNEVLT 377

Query: 375 NIRTITSG------------RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            +R   +G            ++I V GCGGDRD+GKRP++G+IA  LAD  I+T DNPR+
Sbjct: 378 GLRETLAGTRIKKRIRKNQAKLICVIGCGGDRDRGKRPLIGEIASRLADEVIITSDNPRN 437

Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           E+P  I +E++ G        + +R  AI  AI    K D++++AGKG ET   +  G+K
Sbjct: 438 ENPADIISEVMLGASGKHCTSEVDRTAAIYRAIHGARKGDIVLIAGKGAETSQEIQ-GKK 496

Query: 481 KMSVDCDIIREIL 493
               D +++R++L
Sbjct: 497 YPYDDREVVRQVL 509


>gi|325923948|ref|ZP_08185538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545574|gb|EGD16838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 491

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 152/485 (31%), Positives = 225/485 (46%), Gaps = 12/485 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL        + +++ +  DSR ++AG  FVAI G    G  F+ QA A GA A++  
Sbjct: 3   LSQLLPDVPLLHDVQVSGLVMDSRAVRAGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                +  +         + V   R  L   A + +G+  +   ++ VTGT+GK+S    
Sbjct: 63  PPAPAELPAPADA-----IAVPGLRARLGAMADQFHGQPSQALRMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G+ +  +G        +      TTP  +     L+ L  +G   V++E SS
Sbjct: 118 LAQALTLLGMPTGTLGTLGVGLYGSAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+D +      FTNL RDH+DYH     Y  AK +LF     K +   +  D  
Sbjct: 178 HALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDDFG 237

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            +             V S       +  + +   HN     +++ G+      PL G F 
Sbjct: 238 RTLFAALDPALRAIGVSSRAQAQAIVRAQALQLDHNGINFALNIHGEVHPVHSPLLGRFN 297

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L  AG   A+ I  A + E L +L  + GR   +G       + VDYAHT ++LE 
Sbjct: 298 VDNLLAVAGALYALDIAPAQIAEVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQ 357

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L ++R+    R+I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPR ED + I A+
Sbjct: 358 ALASLRSHAQDRLICVFGCGGERDTGKRPQMAAIAEVNADVAIVTDDNPRGEDGDAIVAD 417

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ G       I + +R  AI  AI M +  D++++AGKGHE    V         D  +
Sbjct: 418 ILRGFARPDAAIVQRDRAAAIHQAISMASASDIVLIAGKGHEPYQEVAGVW-HAFNDAIV 476

Query: 489 IREIL 493
             + L
Sbjct: 477 AAQAL 481


>gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
 gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
          Length = 493

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 141/500 (28%), Positives = 221/500 (44%), Gaps = 27/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK ++ + +   ++I+          + ++ +V  DSR  +   +FV   G K D H FI
Sbjct: 5   MKFREWLEELEYDVISG-------NLDIEVEDVIYDSRKARENVVFVCTKGTKIDSHEFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  +  G +A+VV     + D           + V ++R+ L+L ++  +G+  E ++ +
Sbjct: 58  PDVVKAGVKALVVERQAEIPD-------GVTAIRVHSSREALALLSAARFGRPQEKMITI 110

Query: 121 TGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K        ++ I +  G     IG T   I S       TTP    L ++   +
Sbjct: 111 GVTGTKGKTTTTHMIKAILESCGKKVGMIGTTGIVIGSEVTPTMNTTPESYQLFESFERM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  ++ +E SS     HR+DGI+   G FTN+  DHI     + A F   +    +L
Sbjct: 171 VQAGCEYMVMEVSSQAFKMHRVDGIRFDYGLFTNISPDHIG--PDEHADFAEYLYYKSQL 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVE 296
           L +    I+  DD + +E++K                     +  V              
Sbjct: 229 LSRCRIGIVNRDDEHYREIIKDTACELASYSLEQEADFMAGQIHYVSEPEFVGLEFDVTG 288

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    +PG+F VYNAL A  +C  + +    V   LE L V  GR E V  +S+  
Sbjct: 289 RYKLEARVNIPGKFNVYNALAAISVCSFLDLPKEKVRHALEHLSV-NGRMEIV-YSSKKC 346

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAH + S+E +LK +R     R++ VFGCGG+R + +R  MG  A  LAD  I+T
Sbjct: 347 TVIVDYAHNAVSMESLLKTLREYHPKRLVCVFGCGGNRSKDRRYSMGDSAGRLADFTILT 406

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DN R E    I A+I   I      FIE  +R EAI  ++      D++ V GKGHE  
Sbjct: 407 ADNSRFEKTGDIIADIRSSIEKTGGEFIEIPDRREAIAYSMIHARPGDMIAVIGKGHEDY 466

Query: 473 HIVTNGEKKMSVDCDIIREI 492
             V NG +    D +++ EI
Sbjct: 467 QEV-NGVRHHFSDREVVLEI 485


>gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis FAM18]
 gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           FAM18]
          Length = 492

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 144/468 (30%), Positives = 215/468 (45%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +   +     A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A    
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANDYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 494

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 139/496 (28%), Positives = 231/496 (46%), Gaps = 25/496 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+      ++   S       E  I +V+ DSR ++   +FV I G+  DG L++
Sbjct: 1   MKLTNLLRPIKYSILQGES-------EPDIEKVTHDSREVERDTLFVCIKGSATDGALYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A+ +GA AI+             +      ++V+N R+ L+  AS  YG+  + +  +
Sbjct: 54  GEAVEKGAVAILADRRIE-------VPREVTFILVENVRETLAKIASVFYGEPSKEMTVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++ A  +  I ++SG     IG     I       + T+P  + + + L  +
Sbjct: 107 GITGTKGKTTTAYMIYHILEQSGYKVGLIGTIEIRIGEKRIPAKNTSPESVNIQRFLKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q      +E SS GL  HR D I+   G FTNLG+DHI   + +        +     
Sbjct: 167 VLQKCDIAVMEVSSQGLKLHRTDEIQFDIGVFTNLGKDHIGKFEHKDFEEYKNCKAKLFS 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A + +       +                      +    +     +  ++ + 
Sbjct: 227 QSDFGIANMDSPYWREMFLRANCDVETVGFSKEADYYASDEVVTRKSGRLGIRYRLNGKD 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D +  + G F +YN+L A  +C  +G+    + + L K   V GR E + TN  G  
Sbjct: 287 R-GDIVLSMAGRFNIYNSLCAIAVCRRLGVSFENIRQSLCK-TQVKGRVEQISTNK-GTI 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +DYAH + SL+ IL+ + +    RII +FGCGG+R + +R  MGK++  LAD  I+T 
Sbjct: 344 ILIDYAHNAMSLQSILEMVHSYRPHRIICIFGCGGNRAKERRYEMGKVSGALADFTIITS 403

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR E+P +I +EI  G+      ++E  NR EAIR  I+     D++V+AGKGHE   
Sbjct: 404 DNPRYENPLQIMSEIREGVEDGNGNYLEICNREEAIRYGIKYAGAADIIVIAGKGHEEYQ 463

Query: 474 IVTNGEKKMSVDCDII 489
            +  G +    D +++
Sbjct: 464 EIE-GIRYHMTDREVV 478


>gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL001PA1]
 gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA2]
 gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA3]
 gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA4]
 gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL060PA1]
 gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA2]
 gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL103PA1]
          Length = 499

 Score =  289 bits (739), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 153/476 (32%), Positives = 226/476 (47%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     ++    A     
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAEA----G 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G       +  +TGT+GK++ A  V+     +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKVFGHPSDAMTMFGITGTNGKTTTAFLVEAGLCAAGHHVGTI 131

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +        DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++          +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWHAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L    V PGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G I      R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQSIGS-EVLPFDDREVIR 483


>gi|86749112|ref|YP_485608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572140|gb|ABD06697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 485

 Score =  289 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 210/491 (42%), Positives = 279/491 (56%), Gaps = 21/491 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   D            +Q     +  ++ DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDLFSDDTA--------ITVQAAALDVGGLAVDSRAVKPGDVFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    AI   +     D         P + + N R+ L+L A+R++ + P+ I AV
Sbjct: 53  A-------AAIEAGAVAVAGDHPPAGDLAVPFVRLTNPRRALALAAARMFPQQPQTIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G +S  IG       + +    LTTP PI L ++L  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDAIAR 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +L+ 
Sbjct: 166 EGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVV 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296
               A+I AD   S EV+  A   G R++SVG  G     I L         Q++T+   
Sbjct: 226 DGGAAVISADHDCSAEVIDAARARGLRLISVGRNGDAGAGIRLIAAAVDGFAQRLTLDHA 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+++    PL GEFQ+ NALVAAGL I  G D A V   L+ L   PGR E VG    G 
Sbjct: 286 GRNYQVHLPLVGEFQIENALVAAGLVIGTGGDPAAVFAALDHLEGAPGRLELVG-ERNGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD  IVT
Sbjct: 345 PVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAESADAVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPR EDP  IRA I+   PG  E G+R EAIRTAI  L   D LV+AGKGHET  IV 
Sbjct: 405 DDNPRREDPATIRAAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464

Query: 477 NGEKKMSVDCD 487
           +       D +
Sbjct: 465 D-TVLPFSDHE 474


>gi|323165968|gb|EFZ51748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 492

 Score =  289 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 169/493 (34%), Positives = 250/493 (50%), Gaps = 16/493 (3%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L+ +      R + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +
Sbjct: 3   DLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEA 62

Query: 76  AYSLQ--DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVAS 131
               +  D         P++ +    + LS  A R Y +  +N+  + VTGT+GK++   
Sbjct: 63  KAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQ 122

Query: 132 FVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            + Q  Q  G +S  +G               TT S + +   L+ L  QG T  ++E S
Sbjct: 123 LLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVS 182

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL QHR+  +K  A  FTNL RDH+DYH   + Y  AK  L+ E       AII ADD
Sbjct: 183 SHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADD 240

Query: 251 AYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +  + +  +A        ++    G+++    V    +   +  S    D +    L
Sbjct: 241 EVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHL 300

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N L+A    +A+G   A +L+   +L  V GR E   T      + VDYAHT 
Sbjct: 301 MGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTP 359

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P 
Sbjct: 360 DALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPR 419

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ G+           R EA+  A+    + DV++VAGKGHE   IV N      
Sbjct: 420 AIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLDY- 478

Query: 484 VDCDIIREILGLI 496
            D   +  +LG+I
Sbjct: 479 SDRVTVARLLGVI 491


>gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 497

 Score =  289 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 135/503 (26%), Positives = 226/503 (44%), Gaps = 31/503 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL DL+ K   + +           +++I +++ DSR  + G +F  I G   DGH +  
Sbjct: 10  KLVDLLEKLEYQCLQGT-------MDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAK 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +   +GA  ++V     + +          ++ V+N+R  ++  ++  +G   E +  + 
Sbjct: 63  EVAEKGAAVLIVQDKVEVPE-------EVTVIQVENSRYAMACISAAWFGHPAEKLKTIG 115

Query: 122 GTSGKSSVASFVQQICQRS--GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
            T  K    +           G  +  IG   TI       +  TTP    + K  + + 
Sbjct: 116 ITGTKGKTTTTYLVKSILENAGYKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMV 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   V +E SS GL  HR  G +   G FTN+  DHI      +    A     + LL
Sbjct: 176 EAGCDSVVMEVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGP---NEHKDFADYLRCKALL 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+    I+  DA   + +   H           +      +    +  K  + I+ + K
Sbjct: 233 FKQCKVGIFNADAEHLDEILEGHTCEVETFGFSEKADL-RAENTKLVTGKGTLGIAYDVK 291

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +F     LPG F VYN+L A  +C   G+    + + L++  V  GR E V  +   
Sbjct: 292 GLMNFPVEIDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKV-KGRIEMVKVSDE- 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 350 FTLMIDYAHNAMSLESLLTTLKEYKPNRLVCLFGCGGNRSKLRRYEMGEVSGKLADLTII 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P++I  +I  GI      ++E  +R EAI  AI      D++V+AGKGHE 
Sbjct: 410 TSDNPRDEEPQEIIDDIKIGIGKTSGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKGHED 469

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G+K    +  +I+EIL 
Sbjct: 470 YQEIK-GKKYPMDERVLIQEILE 491


>gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis 053442]
 gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           053442]
          Length = 492

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 217/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG- 443
             VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P       
Sbjct: 380 WCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPERVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
          Length = 511

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 131/508 (25%), Positives = 222/508 (43%), Gaps = 26/508 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+  + +   EL+           + ++ EV  DSR    G +FV + G + D H F+
Sbjct: 1   MILRTWLNELDYELVRGS-------LDVEVTEVVYDSRKAVPGAVFVCMAGTRVDSHRFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPEN 116
           P  +  G   +V       +  ++ +  +      IL     R+ L+L ++  +G     
Sbjct: 54  PDVLRAGVRVLVTERDIEEELAASGLAEHEMGRVTILKTAEARRSLALLSAARFGYPASK 113

Query: 117 ILAVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKA 173
           ++ +  T  K        ++ I + +G     IG T T I+        TTP    L ++
Sbjct: 114 MITIGVTGTKGKTTTTHMIKAILEAAGKKVGMIGTTGTVINGQVTPTMNTTPESYELHQS 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + ++  G  ++ +E SS G+  HR+DG+    G FTN+  DHI     + A F   +  
Sbjct: 174 FAKMAEAGCQYMIMEVSSQGIKMHRVDGLAFDYGIFTNISPDHIG--PDEHADFAEYLCC 231

Query: 234 FEELLPKESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
              LL      ++  +D + KE++K    R +    +              +  +  +  
Sbjct: 232 KSRLLSMCRIGLVNLNDGHFKEIVKDASCRLYTYCVKEDGETKADFEASNVRYVSRPDFV 291

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                V G     +          +  +AA    +        + H  +   V GR E V
Sbjct: 292 GTEFDVTGNLDMDVRLGIPGLFNVDNALAALCVCSFLGLPKDRIVHALEHIRVNGRMEIV 351

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T+SR   + VDYAH + S+E +L  +R     R++VVFGCGG+R + +R  MG+I   L
Sbjct: 352 YTSSR-CTVLVDYAHNAVSMESLLTTLRQYHPRRLVVVFGCGGNRSKDRRYSMGEIGGRL 410

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD++I+T DN R E  E I A+I   I      F+E  +R +AIR++I      D++ V 
Sbjct: 411 ADLSIITADNSRYEKVEDIMADIRGSIEKTGGDFVEIPDRRDAIRSSILHAQPGDMIAVI 470

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHE    + NG +   +D ++I E +
Sbjct: 471 GKGHEDYQEI-NGVRHHFLDREVIEETI 497


>gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
 gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
          Length = 483

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 152/503 (30%), Positives = 243/503 (48%), Gaps = 34/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+                  R+ +I  V+SDSR ++ G +FV I G + DGH + 
Sbjct: 1   MRLYELLDGLDA---------ARPDRDCEITGVTSDSRQVEPGTLFVCIRGTRADGHDYA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA AI+   A  L++           +V  +T     +     YG     +  +
Sbjct: 52  VKAAEAGAAAILCERAIGLENE----------IVCHDTHYAYGIVCGNWYGNPARRLRLV 101

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V+  V+ I + +G  +  IG   + I       + TTP P+ L   L+ +
Sbjct: 102 GVTGTNGKTTVSYMVKHILESAGHQTGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARM 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +E SSH LDQ RL G++  +  FTNL +DH+DYH   ++Y++AK +LF   
Sbjct: 162 ADAGCEYVVMECSSHALDQQRLAGLRFASVGFTNLTQDHLDYHGDMESYYHAKKKLFSM- 220

Query: 238 LPKESPAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                 A +  DDAY + +     H       S          K +    +  +  I  +
Sbjct: 221 ---CDAAAVNMDDAYGERLAAEVRHICPVTTFSTVSDAADFTAKDIRPAPDSSRFMIVGK 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G       P+PG+F V NA+ AA +C+A+G+      + L     V GR E + T +   
Sbjct: 278 GAIARVRLPIPGDFSVANAMTAAVMCMALGLTLEQAAQGLNTCQGVVGRIEVLPTGT-DY 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DYAH+ + LE I+  ++    GR++ +FGC G+RD+ KR  M +I   L+D  I+T
Sbjct: 337 VVIRDYAHSPDGLEKIITTMKKFARGRVVTLFGCAGNRDRTKRKKMAEIVARLSDFVILT 396

Query: 417 DDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            DNPR ED  +I  +   G+       +    +R  AI  A+    K DVL++AGKGHE 
Sbjct: 397 SDNPRDEDEMQIIEDAKPGLLEHPDTPYEIIPDRYAAIEWALGHAKKDDVLILAGKGHED 456

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             ++ +GE     +  I+ E+L 
Sbjct: 457 YQVL-HGETICFDERQIVLELLE 478


>gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 496

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 154/474 (32%), Positives = 221/474 (46%), Gaps = 20/474 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+AG IF+A  G   DG  +IP AIA GA  +      + Q        N P 
Sbjct: 26  LHSDSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGAFQ---WNPEWNVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGK------HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + + +    + A+RLYG        P  I  VTGT+GK+S+  ++ Q     G  +  
Sbjct: 83  QGIKDLKHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAI 142

Query: 147 IGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG          +D   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   
Sbjct: 143 IGTVGNGFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQARVNGVPFQ 202

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHN 262
              FTNL RDH+DYH T +AY    ++           A+I +DD Y  E++   K    
Sbjct: 203 TAVFTNLTRDHLDYHGTMEAYG--AIKSRLFYWRGLKHAVINSDDPYGAELIGRLKADRP 260

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                     +   I +    A  +  +V +            L G F   N     G+ 
Sbjct: 261 DLAVYSYGFGEQADIRITGFAAASDGMEVALDTPWGKGSVKTRLLGRFNAQNLAACVGVL 320

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A G     VL  LEK+    GR +     S    + VDYAHT ++LE  L  ++ I   
Sbjct: 321 CADGHPLDKVLAALEKIRPATGRMD-CIIESGKPLVVVDYAHTPDALEKALATLQEIKPQ 379

Query: 383 --RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
              +  VFGCGG+RD+GKRP+MG  A+  AD  +VT DNPR E+P  I A+I+  +P   
Sbjct: 380 GAALWCVFGCGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPADIIADILPAVPAPE 439

Query: 441 -EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + +R  AI  A++     D++++AGKGHET   V  G K    D +  +  L
Sbjct: 440 CVEADRKAAIGFAVKNAASDDIILIAGKGHETYQDVA-GVKHHFSDFETAQAAL 492


>gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           M50/1]
          Length = 516

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 139/523 (26%), Positives = 228/523 (43%), Gaps = 44/523 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+     E +           +  I ++   S  ++ G +FV I G   DGH +I
Sbjct: 1   MRLDQLLKHFSYESVQGSH-------DLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSA---------------YSLQDFSATIRSNTPILVVDNTRKFLSLF 105
             A+  GA A+VV  +                 ++           ++ V +TR+ L+  
Sbjct: 54  MDAVKAGAFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQI 113

Query: 106 ASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRL 162
           ++  Y    +   I+ +TGT GK++ A     I + +G  +  +G   T +    +    
Sbjct: 114 SAAFYDYPAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGH 173

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TTP    L + L+ + S G     +E SS G+   R++GI    G F N+  DHI     
Sbjct: 174 TTPESSDLQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP--- 230

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------VGYQ 273
            +    A+    +  L ++  A I   D  + E +   H       S          G +
Sbjct: 231 GEHASFAEYLYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQK 290

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +  +   ++   +  +        +FL  +PG F V NAL A  +     I   +V 
Sbjct: 291 ADIVAERITFSMKEGRLYSHFFTDGKEEFLLQIPGIFNVSNALAAILVARHFKIAQDVVK 350

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L++   VPGR E V  +       VDYAH   SL  +L  +R    GR++V+FGCGG+
Sbjct: 351 DALQR-QTVPGRCENVRISD-KFVFLVDYAHNEMSLRNLLGTLRGFDPGRLVVIFGCGGN 408

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAI 449
           R + +R  MG+ A  LAD  I+T DNPR EDPE I  +I  GI G    +I   +R  A+
Sbjct: 409 RSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAV 468

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             A +   + D++V+AGKGHE    +  G +    D +++++ 
Sbjct: 469 AYAFDHAREGDIIVLAGKGHEDYQEIG-GVRYPMEDKELVKKA 510


>gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis 961-5945]
 gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis G2136]
          Length = 492

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 145/470 (30%), Positives = 218/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           A+I  DD Y  E+   +K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +           +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
          Length = 488

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 145/467 (31%), Positives = 224/467 (47%), Gaps = 16/467 (3%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR ++ G +FVA+ G+   G  F PQA+ +G      ++  +         S    +V
Sbjct: 26  IDSRQVEPGDVFVALPGSTVHGSDFAPQALKRG-----AAAVVAAPGTLPATLSQQNCVV 80

Query: 95  VDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-S 151
            D+ R+ L   A   +G  +    ++ VTGT+GK++V   ++   QR G     IG   +
Sbjct: 81  HDDPREALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGRRVGVIGTIAN 140

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 +   LTTP    L   LS +++ GV  V +E SSH L Q R  G++  A   TN
Sbjct: 141 RWPGHEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRRTAGLRFSAAVLTN 200

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + +DH+DYH+  ++YF AK  LF      E+   +   D      ++             
Sbjct: 201 VSQDHLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWGYSLHS 260

Query: 272 YQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            + +   L +       ++    +   +G+ +    PL G     N + A    +A+G  
Sbjct: 261 EKAQDPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGRHNGANLMAAQATLLALGFG 320

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A      +    VPGR E V  N+ G  I+VDYAHT ++LE +L+ +  +   R++VVF
Sbjct: 321 PADAAVLSD-APPVPGRLERV-ENAAGLDIFVDYAHTPDALENVLQAMTALDGNRLLVVF 378

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNR 445
           GCGGDRD+ KR  MG+     AD+AI+T DNPR EDPE I A++  G    P  +E+ +R
Sbjct: 379 GCGGDRDRTKRVPMGQAVARYADVAILTSDNPRHEDPEAIMADVRPGLADCPRVVEESDR 438

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             AI  A++ +   D+LVV GKGHET   +     + S    I  +I
Sbjct: 439 KAAIALALQEMVPGDILVVTGKGHETYQDIGGVRVEFSDIRAICEQI 485


>gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 492

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 218/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +   +     A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ LEK+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLEKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha275]
          Length = 492

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 145/468 (30%), Positives = 215/468 (45%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +      VTGT+GK+S+  ++ Q     G  +  +G  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +   +     A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELVGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +           +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDNVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALATLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD+GKR +MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
 gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
          Length = 1035

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 154/494 (31%), Positives = 234/494 (47%), Gaps = 19/494 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI     +L    ++  +    R I  V  DSR +  G +FVA+ G + DGH ++
Sbjct: 1   MKLATLIQ----DLAELAAVRVVGDDARDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYL 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           P  I  GA A+VV  A      +A        ++V    + L + A+R+ G+  E +  +
Sbjct: 57  PAVIDAGAAAVVVERAIEDPALAAR----VTQVIVPEGARALGVLAARMAGRPGERMRLV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  ++ I +    +   IG  S    +       TTP+ + L +AL  +
Sbjct: 113 GITGTNGKTTCSYLIESILRAHDATCGVIGTVSYRYGAREVPAPYTTPTALILQEALGEM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +   TH  +E SS  L   RL G  +   +FTN  +DH+D H +  AY  AK RLF + 
Sbjct: 173 VAASCTHAVLEVSSAALAMERLSGTTVEVAAFTNFTQDHLDVHGSMDAYRAAKERLFRDH 232

Query: 238 LPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           L +   A+I  DD  +  ++    +R                 + +              
Sbjct: 233 LAENGVAVIDVDDKAAPHMIAAAGERRVVRVSARPGATAADAEVRVLAAETTIAGITAEF 292

Query: 294 SVEGKDFDFLFPLP-GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     F    P   G + V N  VA  +C A+ +  A +   +E +  VPGR E V  N
Sbjct: 293 ATPRGSFTLRAPALLGHYNVANLAVAVAVCDALDVPHATIARGIEAMSGVPGRVERVA-N 351

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  I VDYAHT ++L  +L  +R +T  R++ VFGCGGDRD  KRP MG  A   AD+
Sbjct: 352 DAGLDILVDYAHTPDALASVLAALRPLTQRRLLCVFGCGGDRDADKRPKMGAAAAAGADL 411

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            +VT DNPRSE P  I  +I+ G+P  F    +R   I  A+      D++++AGKGHET
Sbjct: 412 VVVTSDNPRSEAPRAIIDQILPGVPAPFFVHSDRRVGIAAAVFEAVPGDIVLIAGKGHET 471

Query: 472 VHIVTNGEKKMSVD 485
             I+ + +     D
Sbjct: 472 YQILGD-DTVHFDD 484



 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V  D R +  G ++VAI G + DGH F  QA   GA A++V    + +D +A      
Sbjct: 522 SRVVIDGRQVAPGDLYVAIRGEQHDGHAFCEQAANAGACALMVERGRAPRD-AAGNALKL 580

Query: 91  PILVVDNTRKFLSLFASRLYGK 112
            ++ VD+TR  L   A     +
Sbjct: 581 AVIEVDDTRLALGSVARWHRAR 602


>gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
 gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
          Length = 487

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 14/480 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+         + AY  
Sbjct: 8   LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  V Q  
Sbjct: 64  EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 123

Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G   T    A ++ R TTP P+ +   L+ L   G   V++E SSHGLDQ
Sbjct: 124 DLLGERCCIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +      FTNL RDH+DYH + +AY  AK +LF     +     +  DD + + +
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVINL--DDDFGRRL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                ++     S+     F++ ++        +  +     +     PL G F + N L
Sbjct: 242 AGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  + +G     +L  L +L    GR + +G   +   + VDYAHT ++LE +L+ +
Sbjct: 302 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    I A+I  G 
Sbjct: 361 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     +R EAI   I      DV+++AGKGHE    + +G +    D +     L
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 479


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 225/470 (47%), Gaps = 25/470 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            ++ +++DSR ++   +F+A  G   DG  +I  AIA+GA  ++  S    Q F      
Sbjct: 385 PVHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDS----QGFDWKPEW 440

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + + + +  +   AS+ Y    E    + VTGT+GK++V  ++ Q  +     S  
Sbjct: 441 QVHNIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAV 500

Query: 147 IGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     +    Q  + TTP P+ L K L+      V  V++E SSHGLDQ R++G+   
Sbjct: 501 IGTLGNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGRVNGVAFD 560

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+ RDH+DYH T +AY  AK +LF+        A++ ADD +   +++     G 
Sbjct: 561 VAVLTNITRDHLDYHLTMEAYQAAKRKLFDWQTLSA--AVVNADDPFGLALIEDLRKQGK 618

Query: 266 RVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           +VLS G   +  +    V       ++ +       D      G+F VYNAL      + 
Sbjct: 619 KVLSYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCLLV 678

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             +     L+ +  L  V GR +  G       + VDYAHT ++LE  L  +R+   G++
Sbjct: 679 NEVALPAALQAVSGLVPVAGRMQMFGGGDLPL-VVVDYAHTPDALEKALHTLRSQARGKL 737

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKG 443
             VFGCGGDRD GKR  MG+IA +LAD  I+T+DNPRSE+P  I A I  G+      + 
Sbjct: 738 ACVFGCGGDRDSGKRSEMGRIADELADSVIITNDNPRSENPYAIIAAIAEGMAREATVET 797

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R +AI  A+             KGHE    +  G +    D D ++  L
Sbjct: 798 DRAKAIALAVS------------KGHEDYQEIQ-GIRYPFSDADWVQNAL 834


>gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae NCCP11945]
 gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
          Length = 492

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 215/468 (45%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+  GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + N +    + A+++Y    +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 534

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 149/507 (29%), Positives = 231/507 (45%), Gaps = 34/507 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L D++ +     I   ++ P    +  +  V  DSR +  G IFVA  G +  G  FIP
Sbjct: 19  RLGDVLRE-----IPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFIP 73

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           +A+A+GA A++V+        SA        + V +    L+  A+ +YG       ++ 
Sbjct: 74  EAVARGARAVIVAR------GSAADTLGAARVEVPDVPLALAQAAAVVYGHPTFTLEVVG 127

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT+GK++ A  VQ    R G  +  +G               T+P    LA+  + + 
Sbjct: 128 ITGTNGKTTTAHLVQACIDRCGGQAGIVGTLGYRFGDLDVHASHTSPEADELARVAAAMV 187

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           ++G TH+ +E SS  L   R+D ++     FTNL +DH+DYH T +AY  AK RLF +  
Sbjct: 188 ARGATHLVMEVSSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARLFVD-- 245

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------------GYQGKFIHLKKVCAIH 286
                A+I  DD + +++++     G    +             G     I   ++    
Sbjct: 246 LGPGAAVINVDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVELAHSA 305

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   +       +      L G     N L A  +   +G D       L     V GR 
Sbjct: 306 SGTFIRARTPAGEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALSSPIQVAGRL 365

Query: 347 EFVG-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E      +    + VDYAHT ++L  +L ++R +  GR++ VFGCGGDRD  KRP MG+ 
Sbjct: 366 ERCDAPGADDVIVLVDYAHTPDALARVLASVRALGGGRVLCVFGCGGDRDPLKRPQMGEA 425

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +AD+AIVT+DNPRSEDP  I   I+     G    + + +R  AI  A+      DV
Sbjct: 426 VGRVADVAIVTNDNPRSEDPRAIADAILPGLAAGRARVVVELDRARAIERAVLDAEPGDV 485

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDI 488
           +++AGKGHE   I+  G      D D 
Sbjct: 486 VLIAGKGHEPYQIIG-GVTLPFDDRDE 511


>gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
 gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
          Length = 532

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 156/476 (32%), Positives = 226/476 (47%), Gaps = 18/476 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E  +  VS DSR I+ G ++ A+ G    G  F+  A A GA A++   A   +  +A  
Sbjct: 64  EVLVTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAVAVLTDPAGVERALTA-- 121

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
               P+LVV + R  L   A+ +YG+  +   +L +TGT+GK++ +  +  + +R G ++
Sbjct: 122 --GLPLLVVPDPRAVLGDVAATVYGEPTKDLQLLGITGTNGKTTTSFLLDAVLRRLGPAA 179

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                 + I      + +TTP    L    + +  QGV   ++E SSH L + R+DG + 
Sbjct: 180 LVGTIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSSHALAKGRVDGARY 239

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+D+H+T + YF AK  LF       +       D      +       
Sbjct: 240 SVAGFTNLSQDHLDFHKTFEQYFAAKASLFTPERCDLAVV---NIDDKYGRRLAAQTVVP 296

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +S      +       + H    + I   G+       LPG+F V NAL+A  +   
Sbjct: 297 LVTVSTTRDADWTVAGTHQSEHGGTVIDIRGPGEALTVEIVLPGDFNVANALLAVAMLRQ 356

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           + + +  +   L    V PGR E       G  + VD+AHT +++E+ L+  R  T GR+
Sbjct: 357 VDVPADEIAAGLRTARV-PGRME-TFLRPDGLAVIVDFAHTPDAVELALRAARGATKGRL 414

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------G 438
             V GCGGDRD GKRP MG  A   AD  IVTDDNPR EDP  IRA  + G         
Sbjct: 415 YAVVGCGGDRDPGKRPAMGAAAARAADTVIVTDDNPRGEDPATIRAAAVEGARAAVPDVE 474

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             E G+R  AIRTAIE+    D +VV GKGHET   V  G      D   +RE+L 
Sbjct: 475 LREVGDRRAAIRTAIELAGPGDTVVVLGKGHETGQDVG-GVIHPFDDRQTVRELLE 529


>gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
 gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
          Length = 506

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 137/502 (27%), Positives = 229/502 (45%), Gaps = 19/502 (3%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +++  +    I  +        +  I  +S DSR+I+ G  F+ I G++ DGHLF+  A 
Sbjct: 14  NMLAGELLSYIK-VKKICGDIEKIDIKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAK 72

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
             GA   + S   + +        + P++ V +T K ++L ++ LYGK  E   ++ +TG
Sbjct: 73  KNGAGLFIASKDIADKAG------DIPVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITG 126

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++ +  +  I +   L +  IG     I       + TTP    L   L  ++++ 
Sbjct: 127 TNGKTTTSYLINHIFETMNLKTGLIGTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEK 186

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK- 240
                +E SSH L   R+ G       FTNL  +H+D H+T   Y + K  LF +L    
Sbjct: 187 CDACVMEVSSHALALDRVIGCDFDCAVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNL 246

Query: 241 ---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +    +   D    E  K    A      +  +    +  K+     K +  +   G
Sbjct: 247 KNGKLKTAVLNIDDKYSEEYKAHTPAEVITYGIDDKTADFYADKIFFDDWKMRFDLHFLG 306

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             +     L G F VYN L A     A GI     +E L+    V GR E V T+ +  +
Sbjct: 307 DVYKVETNLVGLFNVYNVLAAICTAFAKGIAVRDAIEALKSFSGVSGRMETVHTD-KNYK 365

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVT 416
           I +D+AHT + L  +L+ +  +   RII + G   G+RD   RP +G+IAL+ +D  + T
Sbjct: 366 IIIDFAHTPDGLMKVLETLNKVPHNRIITLIGHSGGNRDSSMRPDLGRIALENSDEVVFT 425

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            DNPR+E  E I   ++       +    +R EAI  A  +  + D++++AGKG E   +
Sbjct: 426 ADNPRNESVEHIVEGLVSDCAKTNYTVIEDRKEAIEYAFGIAGENDIVLLAGKGAEPYQV 485

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           + + E     + + ++EILG I
Sbjct: 486 IGD-EYLPYSEIETVKEILGRI 506


>gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sp. M21]
 gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21]
          Length = 505

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 161/523 (30%), Positives = 247/523 (47%), Gaps = 48/523 (9%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL  L+   + PE+              +I  +  DSR +  G +F A+ G K DG  F
Sbjct: 1   MKLAQLLNCLEAPEVAGDAG--------IEIESLCYDSRKVAPGALFFALRGVKSDGTEF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+  GA AIV     +             ++VV + R  +SL A+  YG       +
Sbjct: 53  VEAAVKGGAVAIVADRPCACP--------GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPV 104

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    V+ I +++G+ S  +G  S   ++       TTP  + L + L  
Sbjct: 105 VGITGTNGKTTTTYLVEGIMEQAGVPSAVLGTISYRFAATEIPAPNTTPESVDLQRILRE 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           L   G     +E SSH L+Q R+DG       FTNL RDH+DYH   ++YF +K+RLF +
Sbjct: 165 LVDLGARGAVMEVSSHSLEQRRVDGCLFDVALFTNLTRDHLDYHLDMESYFKSKLRLFTD 224

Query: 237 LLPKE-----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           LL          A++  DD +   + ++A          G       + +     +  + 
Sbjct: 225 LLAPTAEKPLRRAVVNLDDPFGPRIAEKASAPVLTYSMTGKADI--SVAEAEFTVDGIRC 282

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +   +  L G F +YN L A G  +A+G     +   +E    VPGR E V  
Sbjct: 283 RLDTPVGEISLVSELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERV-E 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +  G  + VDYAHT ++LE +L  +  + + RII +FGCGGDRD+GKRP+MG+IA   +D
Sbjct: 342 SEEGITVLVDYAHTGDALENVLSTVSELKTDRIITIFGCGGDRDKGKRPVMGEIAARYSD 401

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------------------PGFIEKGNRIEAIRTA 452
           +A++T DNPR+E+P  I  ++  GI                    GF    +R  AIR A
Sbjct: 402 LAVITSDNPRTEEPSAILDDVRAGILPLGLREYGLEELAAGFHEKGFATIESRRAAIRAA 461

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +      D++++AGKGHE   IV   EK    D +     L L
Sbjct: 462 LLAARPGDIVILAGKGHEDYQIVGT-EKFHFDDREEAAAALKL 503


>gi|39936597|ref|NP_948873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650453|emb|CAE28976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 485

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 205/491 (41%), Positives = 278/491 (56%), Gaps = 21/491 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D+         +  +       +  I  ++ DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDIF--------SAEADIAAPAADLTIGGLAVDSRAVKPGDLFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    A+   +     +       + P + + N R  L+  A+R Y + PE I AV
Sbjct: 53  A-------AAVAAGAVAVAGEHRPEGDLSVPFVQLSNARLALAQAAARFYPRQPEVIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G ++  IG       + +    LTTP PI L ++L  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHAAASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAR 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T   Y NAK+RLF  L+ 
Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRNLVQ 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296
               A+I AD   S +V++ A   G R++++G  G     I L         QQ+T+   
Sbjct: 226 DGGAAVISADHDCSAQVIEAAGARGLRLITIGRNGDPGAGIKLIDAAVEGFAQQLTVEHA 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK      PL GEFQ+ NALVAAGL I  G D+A     LE L   PGR + VG    G 
Sbjct: 286 GKRHRIKLPLVGEFQIENALVAAGLVIGTGGDAAASFAALEHLEGAPGRLDLVG-ARNGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD+ I+T
Sbjct: 345 PVFVDYAHKPDALAKTLQALRPYAKRKLVVVFGAGGDRDSGKRPLMGAIAAENADVVIIT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRA I+   PG  E G+R EAIRTAI  L   D LV+AGKGHET  IV 
Sbjct: 405 DDNPRSEDPATIRAAILAAAPGAREIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464

Query: 477 NGEKKMSVDCD 487
           +       D D
Sbjct: 465 D-RVLHFSDHD 474


>gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
 gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
          Length = 485

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 210/491 (42%), Positives = 277/491 (56%), Gaps = 21/491 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   +                +R I  ++ DSR ++ G +F A+ G K DG  F+
Sbjct: 1   MKLRDLFSAETE--------IAASAADRPIGGLAVDSRAVRPGDLFFALAGAKTDGARFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    AI   +     +         P + + N R  L+  A+R Y + PE I AV
Sbjct: 53  A-------AAIAAGAVAVAGEHPPAGDLAVPFVQLSNPRLALAQAAARFYPRQPEVIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G +S  IG       + +    LTTP PI L ++L  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAG 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH T   Y NAK+RLF  L+ 
Sbjct: 166 EGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRHLVQ 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296
               A+I AD   S EV++ A   G R++++G  G     I L         Q +T++  
Sbjct: 226 DGGAAVIAADHDCSAEVIEAAGARGLRLITIGRNGDPGEGIALIDAAIDGFAQILTVAHA 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+ +    PL GEFQ+ NALVAAGL I  G DSA     LE L   PGR + VG   RG 
Sbjct: 286 GRRYSIKLPLVGEFQIENALVAAGLVIGTGGDSAASFAALEHLEGAPGRLDLVG-AHRGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA + AD  IVT
Sbjct: 345 PVFVDYAHKPDALAKSLQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAEHADTVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRA I+   PG    G+R EAIRTAI  L   D LV+AGKGHET  IV 
Sbjct: 405 DDNPRSEDPAAIRAAILAAAPGARAIGDRAEAIRTAIGELQPGDALVIAGKGHETGQIVG 464

Query: 477 NGEKKMSVDCD 487
           +       D D
Sbjct: 465 D-RVLPFSDHD 474


>gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
 gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 487

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 14/480 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+         + AY  
Sbjct: 8   LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  V Q  
Sbjct: 64  EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 123

Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G   T    A ++ R TTP P+ +   L+ L   G   V++E SSHGLDQ
Sbjct: 124 DLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +      FTNL RDH+DYH + +AY  AK +LF     +     +  DD + + +
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVINL--DDDFGRRL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                ++     S+     F++ ++        +  +     +     PL G F + N L
Sbjct: 242 AGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  + +G     +L  L +L    GR + +G   +   + VDYAHT ++LE +L+ +
Sbjct: 302 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    I A+I  G 
Sbjct: 361 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIADIRKGF 420

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     +R EAI   I      DV+++AGKGHE    + +G +    D +     L
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 479


>gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
 gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
          Length = 487

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 233/480 (48%), Gaps = 14/480 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+         + AY  
Sbjct: 8   LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  V Q  
Sbjct: 64  EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 123

Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G   T    A ++ R TTP P+ +   L+ L   G   V++E SSHGLDQ
Sbjct: 124 DLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +      FTNL RDH+DYH + +AY  AK +LF     +     +  DD + + +
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVVNL--DDDFGRRL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+     F++ ++        +  +     +     PL G F + N L
Sbjct: 242 AGEEQYSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  + +G     +L  L +L    GR + +G   +   + VDYAHT ++LE +L+ +
Sbjct: 302 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    I A+I  G 
Sbjct: 361 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     +R EAI   I      DV+++AGKGHE    + +G +    D +     L
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 479


>gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA1]
 gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA1]
 gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA4]
 gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA1]
 gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA3]
 gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL067PA1]
 gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA1]
 gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA2]
 gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA1]
 gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA3]
 gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA2]
 gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA1]
 gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA2]
          Length = 499

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+      +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +        DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++          +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L    V PGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G I      R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483


>gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium intracellulare ATCC 13950]
          Length = 514

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 150/497 (30%), Positives = 225/497 (45%), Gaps = 19/497 (3%)

Query: 11  FPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            P L   +   P          +  V+  ++ ++ G +F A+ G+   G  +   AI +G
Sbjct: 17  LPALAADIGAAPAGDRAVPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERG 76

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A A++  +    +  +  +  + P+LV  + R  L   A+ +YG   E +  + VTGTSG
Sbjct: 77  AVAVLTDAGGVAEMGA--LGQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSG 134

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++   + +G ++  IG        A   + LTTP    L   L+ ++ QGV  
Sbjct: 135 KTTTTYLIESALRAAGHTAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAAMAEQGVDT 194

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH L   R+DG +   G FTNL RDH+D+H T   YF AK  LF+   P  +  
Sbjct: 195 VVMEVSSHALTLGRVDGTRFAVGGFTNLSRDHLDFHPTMADYFEAKAMLFDPSSPLRARR 254

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++   D  +   M         V + G    +            Q+ T            
Sbjct: 255 VVVCVDDDAGRAMAARAGDAITVSAEGRPAHWRATDVAPMGAAGQRFTAIDPAGARHQLG 314

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG + V N LVA  +  A+G+        L +  V PGR E +          VDYA
Sbjct: 315 VRLPGHYNVANCLVALAILDAVGVSPEQASTGLLQARV-PGRMEEIDAGQ-DFLALVDYA 372

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +L  +L  +      R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDDNPR E
Sbjct: 373 HKPGALRAVLTTLAR-PDRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGE 431

Query: 424 DPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET      
Sbjct: 432 DPASIRREILAGATESGCAADIVEIADRRDAIRHAVAWAGPGDVVLIAGKGHETGQS-AG 490

Query: 478 GEKKMSVDCDIIREILG 494
           G  +   D   + + L 
Sbjct: 491 GHTRPFDDRVELAQALR 507


>gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA1]
 gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA2]
 gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA1]
 gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL086PA1]
 gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA1]
 gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA2]
 gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA1]
 gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL092PA1]
          Length = 499

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+      +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLEGLFAAMAERGASDVVMEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +        DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++          +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L    V PGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G I      R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLPFDDREVIR 483


>gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter sp. K31]
 gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31]
          Length = 485

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 201/477 (42%), Positives = 277/477 (58%), Gaps = 16/477 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V++DSR ++ G++F A+ G+K DG  FI  AIA        S A ++       
Sbjct: 16  DPVITGVTADSRKVREGFLFAALPGSKADGRSFIDGAIA--------SGAAAILAPDDVE 67

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P++   + R+  +L A++ + + P   +AVTGT+GK+SVA F +QI  R G  +  
Sbjct: 68  GLSVPVVHAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVAGFARQIYARLGHKAAS 127

Query: 147 IGPTS-------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G                    LTTP    +A+ ++ L+  GVTH++VEASSHG+DQ RL
Sbjct: 128 MGTLGVVVSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVTHLAVEASSHGIDQRRL 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG++L A  FTN  +DH+DYH T   Y  AK+RLFE LLP+   A++ AD          
Sbjct: 188 DGVRLAAAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKTAVLNADSDAFPAFASA 247

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A  +G  +LSVG++G+ + L     +   Q++ I+ + + FD L PL G+FQ  N LVAA
Sbjct: 248 AVTSGQTILSVGHEGQGLKLVSHTPVPQGQRLKIAAQDRVFDVLLPLAGDFQASNVLVAA 307

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           GL +A G D    +  LE L    GR + VGT +RGG  YVDYAHT + LE +L  +R  
Sbjct: 308 GLVLATGEDLDATIAALEHLEGAAGRLQRVGTGARGGEAYVDYAHTPDGLETVLAALRPH 367

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           T G++IVVFG GGDRD+GKRP+MG+IA  LAD+AIVTDDNPRSE+P  IRA I+   PG 
Sbjct: 368 TRGKLIVVFGAGGDRDRGKRPLMGEIAARLADVAIVTDDNPRSEEPASIRAAILAAAPGA 427

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            E G+R EAIR    +L   DVLVVAGKGHE   +V  G      D     + L  +
Sbjct: 428 QEYGDRREAIRAGAALLADGDVLVVAGKGHEQGQLVA-GVNHPFDDVTETAQALEAV 483


>gi|239626579|ref|ZP_04669610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516725|gb|EEQ56591.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 515

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 135/522 (25%), Positives = 220/522 (42%), Gaps = 37/522 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+D +     E I           + +++EV  DSR    G +FV + G + D H F+
Sbjct: 1   MVLRDWLKGLEYECIRGS-------LDTEVSEVVYDSRKAAPGAVFVCMAGTRVDSHRFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSN--------TPILVVDNTRKFLSLFASRLYGK 112
           P  +  G   +V       +   A               +L   + R  L+L ++  +G 
Sbjct: 54  PDVLKAGVRVLVTERGIEEELKKAKEEGGLTEEDLSEVTVLQTGDGRHALALLSAARFGY 113

Query: 113 HPENILAVTGTSGKSSVA--SFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIY 169
               ++ +  T  K        ++ I + +G     IG T T I         TTP    
Sbjct: 114 PATKMVTIGVTGTKGKTTTTHMIKTILEAAGKKVGMIGTTGTVIGDKVTPTMNTTPESWQ 173

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L +A + ++  G  ++ +E SS G+  HR+DGI    G FTN+  DHI     + A F  
Sbjct: 174 LHQAFAQMADSGCQYMIMEVSSQGIKMHRVDGITFDYGIFTNISPDHIG--PDEHADFAE 231

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV---------LSVGYQGKFIHLK 280
            +     LL      ++  +D++ ++++K A                   G  G      
Sbjct: 232 YLYCKSRLLNMCRIGLVNRNDSHFEDIIKDADCELYTYSVTEERGGLHGSGESGADFTAS 291

Query: 281 KVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            V      +       V+G+    +          +  +AA    +        +    +
Sbjct: 292 DVRYVSQPDFVGTEFDVKGRYEMDVRLGIPGLFNVDNALAAVSVCSFLGLKKESVSRALE 351

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V GR E V T++R   + VDYAH + S+E +L  +R     R++VVFGCGG+R + +
Sbjct: 352 HIRVNGRMEIVHTSAR-CTVLVDYAHNAVSMESLLTTLRQYHPKRLVVVFGCGGNRSKDR 410

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIE 454
           R  MG+I   LAD++IVT DN R E  E I A+I   I      F+E  +R EAI  +I 
Sbjct: 411 RYTMGEIGGRLADLSIVTADNSRYEKVEDIIADIRGSIEKTGGAFLEIPDRREAIEYSIS 470

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
                D++ V GKGHE    + NG +   +D ++I E++G +
Sbjct: 471 HAMPGDMIAVIGKGHEDYQEI-NGVRHHFLDREVIEEVVGKL 511


>gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
 gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
          Length = 484

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 226/482 (46%), Gaps = 27/482 (5%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
               +   +  V+ ++  ++ G IFV + G + DGH    + +++GA  IV         
Sbjct: 15  KAGTQNAVVTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTDHDIKCGK 74

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQR 139
                      LV DNTR  L+   +  YGK  E +  LAVTGT+GK++ A FV+ I   
Sbjct: 75  ----------QLVTDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTT 124

Query: 140 SGLSSFQIGPTSTISS-----FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            G     +G     +       +Q    T P    L   L  + S G  +  +EASS  L
Sbjct: 125 LGKKCGCVGTAGNDTCSGELKPSQHGTPTVPRATVLYSWLGEMVSNGADYCVMEASSQAL 184

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           DQ+R+   ++    FTNL RDH+DYH T + YF AK R+F         A+I  DD Y K
Sbjct: 185 DQYRIGDERIAVAGFTNLTRDHLDYHGTMENYFQAKRRVFTM----CKTAVINIDDEYGK 240

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + +   +      + G         ++ A      +    E         + G + V N
Sbjct: 241 RLAQEFSDIAVTYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVDMNMTGLYNVQN 300

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A  +  A+G D     + L  L  V GR   V        +  DYAHT ++L  +L 
Sbjct: 301 SLCAIAMVTALGFDMTECAKALSDLDGVDGRMNVVYRG--DFTVITDYAHTDDALIKVLS 358

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++ +T GR+I VFG  GDRD+ KRP+M K A D ADI ++T DNP  E+P++I  E++ 
Sbjct: 359 TLKPLTKGRLICVFGAAGDRDKEKRPMMAKAAEDNADILVITSDNPAHENPDEIIREVMT 418

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           GI          +R EAI  A++   K DV+ + GKGHET  I+ + E     + +I+++
Sbjct: 419 GISGKKPCRCITDRREAIAYALDTARKDDVIALCGKGHETYQIIGD-EYLPFSEKEIVKD 477

Query: 492 IL 493
           I+
Sbjct: 478 IM 479


>gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
 gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
          Length = 484

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 227/502 (45%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+ +   +++            ++++++  DSR +Q   +FV I G   DGH FI
Sbjct: 1   MKLKQLLNEMNYQVL-------QGDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            Q I +GA  IVV      Q+           + V   R  L+L +   +      +  +
Sbjct: 54  DQVINRGARVIVVEHDVPFQE-------GITYIRVKEARLALALLSCAFFEHPSRQMTVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++ +  ++ I +++      IG   +I +   Q  + TTP    L + +  +
Sbjct: 107 GITGTKGKTTTSYMMESILEKANKKVGIIGTIGSIVNGEFQKTKNTTPESFELQRLMRQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +  +E SS GL  +R+ GI    G FTNL  DHI  H   + +        +++
Sbjct: 167 VECGCEYCVMEVSSQGLMLNRVAGIDFDYGVFTNLSPDHIGEH---EHHSFEHYMACKKM 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L +     I+  D    E M +      +  S+  Q      +   +             
Sbjct: 224 LFQMCKVGIFNRDDEHYEDMIKGAKCDIKTYSLHQQSDLKASQIHLSQGTGTLGVSFQTS 283

Query: 298 K--DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D +F   +PG F VYN+LVA  LC  +GI++  + E L+K+  V GR E V    + 
Sbjct: 284 GLIDANFETDIPGHFSVYNSLVAIILCHLLGIETNYIKEALKKV-RVRGRVEIVPVG-QK 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + S E IL+ I      RI+ V+G GG RD  +R  +G+I       +I+
Sbjct: 342 YTVMIDYAHNALSFESILQTIMDYQPHRILCVYGAGGHRDVKRRYDVGEIVAKYKAFSIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+  +I  +I+ GI      ++   +R EAI  A+E     DV++  GKGHE 
Sbjct: 402 TADNPRGENVSQICEDIVTGIHRVGGDYVIIEDRKEAIHYALEHAEANDVILCLGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             I+ N E     +  II +  
Sbjct: 462 YQILQN-EPLPFSEKQIIEDYF 482


>gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 491

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 149/502 (29%), Positives = 240/502 (47%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L+Y    ++++         ++  I      D+  +  G ++VA+ G++  G   
Sbjct: 1   MKLSELLYGHDHQVLHG-------DQDTPITSGPCLDADRVTPGSLYVALPGHRAGGPEA 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENI 117
           + +A+A+GA A++V          A   +   ++ V + R   +L ++R +G+     ++
Sbjct: 54  LGEALARGAAAVLVEGPDPAGHRPA--DTGACVVRVPDARIATALVSARYHGEPGRAMDV 111

Query: 118 LAVTGTSGKSSVASFVQQICQR-SGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172
           +AVTGT+GK+SV+S  + +     G     IG               + L+TP    L  
Sbjct: 112 VAVTGTNGKTSVSSMYESLLTLSEGARVGVIGTSGARVGGAPIPMPRSVLSTPESPDLQY 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+ +  +G   V +EA+S GL  HR+DG  +  G FTNL +DH+D H T ++Y  AK  
Sbjct: 172 LLACMRDRGGDSVVLEATSMGLLNHRVDGSFVDVGVFTNLTQDHLDDHGTMESYTRAK-- 229

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                      A++ ADD     +       G                 +    +  +  
Sbjct: 230 -MLLFQGMCRRAVVNADDPVGAAIPALMP--GAVTTYAVDADADYRATDLVVDSSGTRFV 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+ +    P+PG F V NAL A   C  +G D   +++ L+++  +PGRFE  G  
Sbjct: 287 LHHDGRKYPAAIPVPGRFSVSNALAAVAACHVLGHDLDALVDALDRMPQIPGRFEHFG-T 345

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAH+ +SL+ +L  IR     R++ VFGCGGDRD  KR  MG+IA   +D+
Sbjct: 346 PEGVSVIVDYAHSPDSLDKVLCTIRGFAPRRVLTVFGCGGDRDTTKRARMGEIAATYSDL 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++T DNPR EDPE I  ++  GI          G+R  AI  A+      DV++VAGKG
Sbjct: 406 CVLTSDNPRYEDPEAIMDQVAPGIEAVGTPFARVGDRRGAIALALSSAEPGDVVLVAGKG 465

Query: 469 HETVHIVTNGEKKMSVDCDIIR 490
            ET   V  G+     D  ++R
Sbjct: 466 SETHQSVG-GDLVPFDDMTVVR 486


>gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2]
          Length = 485

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 14/480 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+         + AY  
Sbjct: 6   LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 61

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  V Q  
Sbjct: 62  EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 121

Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G   T    A ++ R TTP P+ +   L+ L   G   V++E SSHGLDQ
Sbjct: 122 DLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 181

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +      FTNL RDH+DYH + +AY  AK +LF     +     +  DD + + +
Sbjct: 182 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVINL--DDDFGRRL 239

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                ++     S+     F++ ++        +  +     +     PL G F + N L
Sbjct: 240 AGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  + +G     +L  L +L    GR + +G   +   + VDYAHT ++LE +L+ +
Sbjct: 300 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 358

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    I A+I  G 
Sbjct: 359 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 418

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     +R EAI   I      DV+++AGKGHE    + +G +    D +     L
Sbjct: 419 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 477


>gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAb1]
 gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 487

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 151/480 (31%), Positives = 234/480 (48%), Gaps = 14/480 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +FP   R+  I E++ DSR ++ G +F+A+ G ++DG   I  A+         + AY  
Sbjct: 8   LFPQAERDLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADAL----AKGAAAVAYEA 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  V Q  
Sbjct: 64  EGAGELPPSDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQAL 123

Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G   T    A ++ R TTP P+ +   L+ L   G   V++E SSHGLDQ
Sbjct: 124 DLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  +      FTNL RDH+DYH + +AY  AK +LF     +     +  DD + + +
Sbjct: 184 GRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPGLRCRVINL--DDDFGRRL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                ++     S+     F++ ++        +  +     +     PL G F + N L
Sbjct: 242 AGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  + +G     +L  L +L    GR + +G   +   + VDYAHT ++LE +L+ +
Sbjct: 302 AAVGALLGLGYPLGDILRTLPQLQGPVGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAL 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R   + R++ +FGCGGDRD GKRP+M  IA  LAD  +VTDDNPR+E    I A+I  G 
Sbjct: 361 RPHAAARLLCLFGCGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     +R EAI   I      DV+++AGKGHE    + +G +    D +     L
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKGHEDYQEI-DGVRHPFSDIEQAERAL 479


>gi|134102304|ref|YP_001107965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914927|emb|CAM05040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 522

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 157/511 (30%), Positives = 230/511 (45%), Gaps = 30/511 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +LI          L         R +   +  ++H++ G +F A+ G +  G  F  
Sbjct: 5   QLAELIGARI------LRAPGQGPSGRPVTGATLRAQHVRPGDLFAALPGTRVHGADFAA 58

Query: 62  QAIAQGAEAIVVSSAY----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-- 115
            A+  GA A++   A      L D          +LV D+ R  L   A+++YG+  +  
Sbjct: 59  TALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHDDPRAALGPAAAKIYGEPSKQL 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKAL 174
            IL VTGTSGK++    ++     +G ++  +G   T  +    D+  TTP    L   L
Sbjct: 119 RILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETRIAGERLDSAFTTPEAPDLQALL 178

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +   GVTHV +E SSH L   R+ G +   G FTNL +DH+D+H+    YF AK  LF
Sbjct: 179 AVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLF 238

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     E           +    K        V + G         +      ++     
Sbjct: 239 DGRSEHEVVCT------DTDWGRKLVKPGTITVSTTGDASWTATDVEAFPTGEQEFTAHG 292

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             G        LPG F + NAL+A G+  A  + +  +   L ++ V PGR E V     
Sbjct: 293 PGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWAIERGLAEVDV-PGRMERVALGQ- 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VDY+H   ++  +L   R    GR+IVV GCGGDRD  KRP+MG+ A   + + I
Sbjct: 351 DFTAVVDYSHKPGAVSAVLDAARAQAEGRVIVVLGCGGDRDVAKRPLMGEAAARRSGLLI 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           VTDDNPRSEDP  IRA ++ G            IE+G+R EAI  A+   +  D++VVAG
Sbjct: 411 VTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERGDRREAIAEAVARASSGDIVVVAG 470

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           KGHET   V  G      D + +   L   L
Sbjct: 471 KGHETGQEVA-GVVHPFSDREELAAALRRRL 500


>gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 495

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 217/473 (45%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  +  DSR +  G  FVAI G    G  F+ QA A GA A++              
Sbjct: 19  DVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEPPAPNGMPVPAD 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+      ++ VTGT+GK+S    + Q     G  +
Sbjct: 79  A-----IAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQAMTLLGTPT 133

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +      +          
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDAFGRTLFASLDPALR 253

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S       +  + +   HN     ++++G+      PL G F V N L  AG   
Sbjct: 254 AIGVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALW 313

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 314 ALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPRSED + I A+I+ G       I
Sbjct: 374 LICVFGCGGERDTGKRPQMAVIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPDAAI 433

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 434 VQRDRAAAIHQAIGMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS)
 gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 497

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 236/504 (46%), Gaps = 27/504 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+      +  +            I+ +  DSR +  G +F+A+ G K+DG  FI Q
Sbjct: 6   LKYLLLPWIKNIPKKY-----------ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQ 54

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI + A AI+  +    +        N  ++      + +SL A+R Y +  +   I+ +
Sbjct: 55  AINKKAAAILCETKKKDKHGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V   + Q     G  +  +G        + Q    TT SPI++   LS +  
Sbjct: 115 TGTNGKTTVTQLINQWSTILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLE 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    V++E SSHGL QHR+  +      FTNL +DH+DYH+  + Y +AK  LF     
Sbjct: 175 KQAELVTMEVSSHGLIQHRVKEVPFYIAIFTNLTQDHLDYHENLEKYESAKWLLFS--TH 232

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGC------RVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           K    I+ ADD Y K  +K+  N               Y  K+I+   +   +N   +T 
Sbjct: 233 KVKKIILNADDQYGKIWLKKLLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNSIYITF 292

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G F V N L++    + +G   + ++   EK+  V GR E      
Sbjct: 293 ESSWGTGRISSCLIGRFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVK 352

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +     +DYAHT ++L+  L  I +     I  +FGCGG+RDQ KRPIMG IA  ++D  
Sbjct: 353 KPTF-IIDYAHTPDALKKTLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDKV 411

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+T+DNPR+E  +KI  +I++G       +   +R +AI  A        ++++AGKGHE
Sbjct: 412 IITNDNPRNEKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGHE 471

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
              I+ N       D  I+  +LG
Sbjct: 472 EKQIIQNRSINY-SDKKIVLNLLG 494


>gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 497

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 132/502 (26%), Positives = 227/502 (45%), Gaps = 20/502 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  K+  +L+  +           +++++ DSR +    +F  I G   DGHLF  +A  
Sbjct: 1   MFAKELADLL-VIKRVEGSLENIVVDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
            GA   V S     Q        ++P++ V +  + ++LFA+  YG   E  N++ VTGT
Sbjct: 60  LGANVFVASKPIKEQVG------DSPVIYVKDVTRVMTLFANHFYGYPSENLNMIGVTGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++V   V  + +  G  +  IG     I     + R TTP  + + + L  +   G 
Sbjct: 114 NGKTTVTHMVDYLLEELGKPTALIGTMYRKIGEERIETRNTTPEILTVHETLQKVKEIGG 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLP 239
               +E SSH L   R+ GI      FTNL  +H+D H+T + Y +AK            
Sbjct: 174 DTCIMEVSSHALQLGRVWGIDYNVAVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSK 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            E P +   +             +   +     +   I   ++ +        ++V G+ 
Sbjct: 234 NEKPRVAILNRDQEYFGQFAYSTSAEIISYGFSEEADIRATEIESNGAMTTFVVTVNGEK 293

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              + P+ G F VYN L A G+ +  GI     +E + K   V GR + +    +  ++ 
Sbjct: 294 IPVMVPMIGLFNVYNVLAAFGVAMVNGIPLRKAIEKIAKFPGVGGRMQLIQKG-QPFQVI 352

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDD 418
           +D+AHT + LE +L  +  +   R+I + G   G+RD   RP +G+IA + +D  I+T D
Sbjct: 353 IDFAHTPDGLENVLSTLEEVKINRVITIMGHSGGNRDSSMRPELGEIAFEKSDYVILTAD 412

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           NPR E  EKI +EI+ G       +    +R +AI  A+E+  + D+L+ AGKG E   +
Sbjct: 413 NPRQESLEKIYSEIVSGRKNENTPYECVDDRKQAIERALELAQEGDILLFAGKGVEPYQV 472

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           +   E     + + + + L  +
Sbjct: 473 IGE-EYIPYNEVETVVQALEKL 493


>gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 499

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 136/481 (28%), Positives = 222/481 (46%), Gaps = 30/481 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +     S DSR ++ G IF+A+       K     F   A+  GA A++  +   + +  
Sbjct: 20  QPFQGFSLDSRKVEKGQIFIALSSYSQPEKT--RQFAQNALDAGALAVISEATLGVTNE- 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQR 139
                     V  + R  +  +  +         P   +AVTGT+GK++++  + ++   
Sbjct: 77  ---------WVCPDVRYQMGEWQKQYLQAVDPVQPICGVAVTGTNGKTTISRLIAELISS 127

Query: 140 SGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G     +G T          +  TT   + L  AL   +  G   V++EASSHGL+Q R
Sbjct: 128 QGKGCAVMGTTGNGILPNLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLEQGR 187

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L+G  L    ++NL RDH+DYH T +AY  AK RLF+    K     +    A       
Sbjct: 188 LNGCDLEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFTTLKAVVINLDDAYAQLMLDAA 247

Query: 259 RAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +A+ +  ++L+          H+  +    +    T+      +    PL G F V N L
Sbjct: 248 KANPSQPKILTYSLTQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPLLGHFNVENLL 307

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            +       G D A ++E + +L   PGR + +          VDYAHT ++L  +L  +
Sbjct: 308 ASLIAAECAGFDLADLVEFVPQLQGAPGRMQVIQDA--NRLFVVDYAHTPDALIQVLTTL 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +   +G++  VFGCGGDRD+GKRP+M + ALD A+  I+T DNPR+ED  +I A++  G+
Sbjct: 366 KRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDHANPVILTSDNPRTEDQAQIFADMKQGM 425

Query: 437 P----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                   E  +R EAI+  +      D++V+AGKGHE    + +G +    D   ++  
Sbjct: 426 NFTEHLMHEIHDRREAIKFVVAQAQAGDIVVIAGKGHENYQEI-DGVRHWFDDVVEVQSA 484

Query: 493 L 493
           +
Sbjct: 485 I 485


>gi|88809251|ref|ZP_01124760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
 gi|88787193|gb|EAR18351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
          Length = 499

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 142/489 (29%), Positives = 222/489 (45%), Gaps = 20/489 (4%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       +  ++ DSR +  G +F+ + G + DG  F PQA+A GA A+++    +  
Sbjct: 13  VPSGLANATVTSLTCDSRCVGKGSLFIGLPGERVDGGSFWPQALAAGAAAVLIGEQAAAS 72

Query: 81  DFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
              A       +LV+ +     +   AS  + +    +  + VTGT+GK++    ++ + 
Sbjct: 73  HPPAF---GDAVLVLPDPVSVWAGELASAFWQQPSTRLGLIGVTGTNGKTTTTHLIEHLS 129

Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           Q  G  +   G   +     +     TT     L   L+     G    ++E SSH LDQ
Sbjct: 130 QACGQPAALFGTLVNRWPGHSLTATHTTSVADRLQAQLAEALEAGTQMAAMEVSSHALDQ 189

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSK 254
           HR+ G +     FTNL +DH+DYH + +AYF A  ++     L+ +   A++  DD + +
Sbjct: 190 HRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKSRLFASPYLVGEGPRAVVNTDDPWGR 249

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++  R            +    +    +          +     +  F  PL G F + N
Sbjct: 250 QLADRLGERCWSSSLETHADLTM--GDLRMTSAGVDGLLVTPLGEGRFHSPLVGRFNLMN 307

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-----VGTNSRGGRIYVDYAHTSNSL 369
            + A G  +  G+   L+L  +     VPGR E               + VDYAHT + L
Sbjct: 308 LMQAVGALLQQGLPLGLLLASIPSFRGVPGRMERVVVKGSAMIDEHPSVIVDYAHTPDGL 367

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L   R  T GR++ +FGCGGDRD+GKRP M  IA  LAD  ++T DNPR+E+P +I 
Sbjct: 368 RNALLASRPFTKGRLVCLFGCGGDRDRGKRPQMASIAASLADRVVITSDNPRTENPNQIL 427

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            +I+ G+P    F    NR  AI  AI      D+L++AGKGHE   I+  G K    D 
Sbjct: 428 EDIVVGLPTGTEFSVDVNRSTAIANAIREARPDDLLLIAGKGHEDYQILDIG-KIHFDDR 486

Query: 487 DIIREILGL 495
           +   + L L
Sbjct: 487 EEAEKALRL 495


>gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 497

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 137/500 (27%), Positives = 238/500 (47%), Gaps = 22/500 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  LI      ++   S  P +  ++ I  +S++S +++   +F+   G+K D H   
Sbjct: 1   MKLGKLIETIEKFVVK--SNIPPELIDKDIEHISNNSNNLKENTLFICRKGSKFDSHTIA 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +   +G    +V            I +  P + V ++R   +  A+  Y    ++++  
Sbjct: 59  ERLYNEGMVIALV--------TEEEINTKLPHVQVYDSRLAEAYLAAEFYSHPYQHLITF 110

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
             TGT+GK++ A     I Q+ GL+    G   + I         TTP  I +   +S  
Sbjct: 111 GVTGTNGKTTCAHLFHHIMQQFGLNGSLSGTVLNDILGDKFYVHNTTPDAITIMDNMSKT 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G ++ S+E SSH LDQ R++ I+      TN+ RDH+DYH T + Y N+K+ LF+ L
Sbjct: 171 HKNGGSYYSMEVSSHSLDQGRVETIRFDIAGLTNITRDHLDYHPTFEHYVNSKLHLFDLL 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I    +    +++            V    ++  +  +    N     +    
Sbjct: 231 KKDGIAVI----NEEYVQLLNGKKVPNLVTFGVNENAQY-KISDITTGWNGTNFILRTPY 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
                   + GE+  +N  +     + IG +   V+ ++     V GRFE +    R G 
Sbjct: 286 GTKKVYTQMIGEYNAFNVTLVLAGLVEIGYEIDEVISYISSFRGVDGRFEPIPEARRLGI 345

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +D+AH+ ++LE ++ + R +  GR+IVV+G GG  D+GKRP+M ++   LADIAI+T
Sbjct: 346 EVVIDFAHSPDALEKVISSARKLAKGRVIVVYGAGGQADKGKRPMMAEVVTRLADIAILT 405

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            D+PR E+PE+I  E+  G+      +   +R EAI TAI + N+ DV+++ G+GHE   
Sbjct: 406 TDDPRGENPEEIINEVEKGVRPNSLSLTVLDRKEAIDTAITLANRGDVVLITGRGHEPYQ 465

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I ++  K    D D+  +I+
Sbjct: 466 IFSDTLKIPFKDRDVALDII 485


>gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 498

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 140/496 (28%), Positives = 232/496 (46%), Gaps = 17/496 (3%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L   LS +     ++ IN +  DSR ++   IF+A+ G K+DGH FI +A+++   A+
Sbjct: 4   NNLKYFLSPWIKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           +   +   Q       +N PI+      K LS  + R Y +      ++ +TGT+GK++V
Sbjct: 64  LSEVSERKQHGKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTV 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G     +G        +      TT S I +   L  + ++  +  ++E
Sbjct: 124 TQLINQWSELLGDKIATMGTLGNGFYKSLIPTENTTASAIDIQSFLYSVLNKVKSV-TIE 182

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  I   A  FTNL +DH+DYH+  + Y  AK  LF +     +  I+ A
Sbjct: 183 VSSHGLVQNRVKNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTDHT--VNKIILNA 240

Query: 249 DDAYSKEVMKRAHNAGCR------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +D Y++  +K+  N               Y  K+++   +     K  V           
Sbjct: 241 NDKYAQNWLKKFSNKYTIAVTIQDCTQKKYSTKWLNATYIKVYGEKTNVKFESSWGHGIL 300

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G F + N L+A    + +    + +++   ++  + GR +   +        +DY
Sbjct: 301 STYLIGTFNIKNLLLALACMLEMNYKLSDLVKKSIQIKPIYGRMQTFNSIKTKPICIIDY 360

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AHT ++LE  L  I+      +I  +FGCGG+RD+ KRP+MG+IA  +A+  ++T+DNPR
Sbjct: 361 AHTPDALEKSLNAIKIQYCKKKIWCIFGCGGERDKKKRPLMGEIAEKIANKVVITNDNPR 420

Query: 422 SEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            ED  KI  EII G       I   NR +AI       N  D++ +AGKGHE   I+ + 
Sbjct: 421 HEDQNKIIQEIITGCKEKEKIIIIPNRKKAITYVFFQSNIDDIIFIAGKGHENYQIIGDQ 480

Query: 479 EKKMSVDCDIIREILG 494
                 D +I+  +L 
Sbjct: 481 YTS-HSDQEIVLNLLE 495


>gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 499

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 228/473 (48%), Gaps = 41/473 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  ++ D R I+AG +F A+ G   DG  F  +A+ +GA A++ +           +   
Sbjct: 51  VTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGAVAVLTA--------GQPVAVG 102

Query: 90  TPILVVD--NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            P LVV   + R  +   A R++G      +++ VTGT+GK++  S V Q+ +R G    
Sbjct: 103 VPQLVVPRASLRTAVGRVAHRIFGDPSSAVSVIGVTGTNGKTTTVSVVSQLLERLGEGVG 162

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G           +RLTTP    LA+ L+     G   V++E SS  +   R++G+ + 
Sbjct: 163 VLGTL--------WSRLTTPEAPELARRLAEFRDSGRRWVAMEVSSIAIAMERIEGLHVR 214

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G FTNL +DH+D+H + + YF AK RLFE             DD +   +         
Sbjct: 215 VGVFTNLSQDHLDFHGSMEDYFAAKARLFEPERTAIGVIN--VDDPWGARLAASVRVPVV 272

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V         I    +    N +            +   L GE  + N L+A  +   +
Sbjct: 273 PVSISAVTDIEIDAAGIRFRRNGR-----------WYRSRLVGEHNLRNILLAVSVLEQV 321

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGR 383
           G D  L+   L ++    GR + +        + VDYAH+ ++L  +L+  R +    GR
Sbjct: 322 GFDPDLLRGVLGEVESPRGRMQRILGPRG--LVVVDYAHSPDALAAVLRAARLLVGPRGR 379

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFI 440
           ++VVFG GG+RDQ KRP+MG +A  LAD+AIVT DNPRSEDP  I A+I+ G     G  
Sbjct: 380 LLVVFGAGGERDQAKRPLMGAVAEQLADVAIVTSDNPRSEDPAAIAAQIVAGWRDRRGVR 439

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +R  AI  A+ M+   DVLVVAGKGHE V ++ +G      D D++   L
Sbjct: 440 VVLDRRAAIEEAVAMMAPGDVLVVAGKGHERVQVI-DGVATPFDDIDVVHAAL 491


>gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 492

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 156/504 (30%), Positives = 256/504 (50%), Gaps = 25/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+  DF                + I+ ++ +S+ ++   +F A+ G K DGH FI
Sbjct: 1   MILKELLRSDFN---------VKGDINKNIDYITYNSKDVKEASLFFAVSGQKADGHFFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI +GA+A+V  +      F  +  ++   + V+++R  LS  +S+ YG   E   I+
Sbjct: 52  EEAIKKGAKAVVYETG----HFMPSEYADVTWIGVNDSRDALSWISSKFYGNPSERLKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            +TGT+GK++ +  +++I +R    +  IG    +    +     TTP      + L  +
Sbjct: 108 GITGTNGKTTTSYLIREILKRYDKKTGVIGTIKYLIDNEEKVAVHTTPEAPEFQELLHEM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV +V  E SSH L   R+D  K     FTNL RDH+D+H+  + YFNAK RLF EL
Sbjct: 168 LVKGVEYVITEVSSHALALKRVDYTKFDIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTEL 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  E  A+I  DD Y + + ++ +           Q               +      + 
Sbjct: 228 LKNEGVAVINFDDVYGRRLAEQLNTKKITYSIENPQADIYVKNYRLNFKETEINLHIKKE 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+      L G   +YN + A  + +A+ I   ++   +   H   GRFE V    +   
Sbjct: 288 KELVVKTHLLGIPNIYNVISAVSVAVALNIPFDIIESAISDAHSPDGRFERV-DEGQDFL 346

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           ++VDYAH+ ++LE +L ++R +      +G+I+ VFGCGG+RD+GKRP MGKIA +L+D 
Sbjct: 347 VFVDYAHSPDALERLLISVRKLKEEISKNGKIVTVFGCGGNRDRGKRPQMGKIATELSDY 406

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I+T DNPR E+P +I  EI  GI    +I   +R  ++    ++  K D+L+VAGKGHE
Sbjct: 407 VILTSDNPRWEEPREIIKEIEEGILKDNYIVVPDRTMSLYIGTKICKKGDILIVAGKGHE 466

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               +  G++    D +I+ + L 
Sbjct: 467 DYQEIK-GKRYPFSDREILVKALR 489


>gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 515

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 159/478 (33%), Positives = 240/478 (50%), Gaps = 23/478 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +SSDSR I+ G +FVA+ G + DGH F+  A+++GA A++       +     +      
Sbjct: 32  ISSDSRDIEQGGLFVAVRGFQADGHDFVADAVSRGAAAVICE-----EFPGGDVPPGVCF 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +   + R  L+  A  LYG   E   ++ V+GT+GK++ A  +  +   +G+    IG  
Sbjct: 87  IKAPDARLALAEAAFALYGGASEQLDVIGVSGTNGKTTTAMLIAAMLNHNGIRCGYIGTG 146

Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + I         TTP    L + L  +  +G   V++E SSH L   R+ G++     F
Sbjct: 147 RAVIGDEEIPLERTTPEAHGLHRLLRRMVDEGCRAVAMEVSSHALMLQRVHGVRFRVAVF 206

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC---- 265
           TNL  DH+D+H + +AY +AK RLF + L  E  A+   DD  +  + +    A C    
Sbjct: 207 TNLTVDHLDFHGSMEAYASAKQRLFRQ-LLPEGRAVFNMDDPRAPFMAEGLPPASCSGCS 265

Query: 266 -----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R       G++   +          + +S     FD    LPG F V NAL+AA 
Sbjct: 266 LSGVERRADRSVCGEWFLAEVTGEDAQSSHLRLSFPDGMFDGELLLPGRFNVMNALLAAA 325

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C A+G+           L  V GR E V       R  VDYAHT ++L+ +L+ +  + 
Sbjct: 326 TCHAMGVSGGAAAASFPFLPPVQGRMERVDGGPGRVRAIVDYAHTPDALQRVLQTLARLK 385

Query: 381 S--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              GR+ VVFGCGGDRD  KRP+MG+IA ++AD+ I+T DNPRSEDPE+I  +I  G+  
Sbjct: 386 PAGGRLAVVFGCGGDRDPSKRPVMGRIAEEIADMVILTSDNPRSEDPERILDDIEQGMSC 445

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            G     +R  AI TA+  L + D+L+VAGKG E+    + G++    D + +   LG
Sbjct: 446 IGHRRIADRGTAISTAVAELGELDILLVAGKGRESYQE-SMGKRVFFSDREFLLNSLG 502


>gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium kansasii ATCC 12478]
          Length = 528

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 153/497 (30%), Positives = 232/497 (46%), Gaps = 16/497 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +      + +  + +P  +R+ +I  V+  ++ +Q G +F A+ G+   G     +AI +
Sbjct: 22  LAAQTGAVPDGAADYPETFRDVQITGVTLRAQDVQPGDLFAALAGSATHGARHAGEAIER 81

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++  +       +    ++ P+LV    R  L   A+ +YG+  E   ++ +TGTS
Sbjct: 82  GAVAVLTDADGVAAMGA--HAASVPVLVHPAPRSVLGGLAATVYGRPSERLTVVGITGTS 139

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   +  G  +  IG        A   + LTTP    L   L+ +S +GV 
Sbjct: 140 GKTTTTYLVEAGLRAGGRVAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAEMSERGVD 199

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G FTNL RDH+D+H T + YF AK  LF+      + 
Sbjct: 200 TVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRAG 259

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDF 302
            ++   D  +   M         V +      +  +  V      Q+ T           
Sbjct: 260 TVVVCVDDDAGRAMAERAGDAITVSARDRAAHWRAVDVVPMGAAGQEFTAIDPAGVQHRV 319

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N L+A  +  +IG+        L +  V PGR E V          VDY
Sbjct: 320 RIGLPGGYNVANCLLALAILDSIGVSPEQAAPGLRQARV-PGRLEQVDRGQ-DFLALVDY 377

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L  + +    R+ VVFG GG+RD GKR  MG +A +LAD+ +VTDDNPR 
Sbjct: 378 AHKPGALRAVLTTLTS-PDRRLAVVFGAGGERDPGKRAPMGAVAAELADLVVVTDDNPRG 436

Query: 423 EDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  IR EI+       G    +E  +R +AIR A+      DV++VAGKGHET     
Sbjct: 437 EDPAAIRREILAGAAAAGGTAEVVEVADRRDAIRHAVAWAGPGDVVLVAGKGHETGQ-RG 495

Query: 477 NGEKKMSVDCDIIREIL 493
            GE +   D   + E L
Sbjct: 496 AGEVRPFDDRVELAEAL 512


>gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 516

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 143/482 (29%), Positives = 238/482 (49%), Gaps = 18/482 (3%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
                  +  +++DSR + +G +FVAI G + DG  F+P+A+  GA+ IV     S ++ 
Sbjct: 36  EAGTSPSVEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEK 95

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
           +   + +   + V +  + L+  A  L+    +   ++ VTGT+GK+S A+ + ++ +R 
Sbjct: 96  ALFEQVDASYIAVSSAHEALAALAQALWHYPSKHLRLVGVTGTNGKTSTATMLHRLFERL 155

Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  S  IG   + I +       TTP PI LA+ L  +   G +HV +E SSH   Q R+
Sbjct: 156 GYKSGLIGTVENRIGNEIIPATHTTPDPIALAQLLYRMQQAGCSHVFMEVSSHAAHQRRI 215

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ + G FTNL RDH+DYH T Q Y  AK   F++ L   + A++ ADD     +++ 
Sbjct: 216 GSLEFVGGLFTNLTRDHLDYHGTMQEYIRAKKMFFDQ-LSPNAFALVNADDRNGSVMLQN 274

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                       +      + +     + +   + +  +                 + AA
Sbjct: 275 TSAKKYTYGLKSFADFKAKVVE----GDFRGTELLLNDRSVWIPLVGAFNAYNITLVYAA 330

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +   ++  ++L+ L  +    GRFE    +  G    VDYAHT ++L  +L+ IR +
Sbjct: 331 ARLLLPDLEQDVLLQALSTIETAEGRFEV--ISEGGRIGIVDYAHTPDALIKVLETIRPL 388

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               GR+I V G GG+RD+GKRPIM + A   +D+ I+T DNPR EDP+ I  E++ G+ 
Sbjct: 389 VPQGGRVITVVGAGGNRDRGKRPIMAQEAFRRSDLLILTSDNPRDEDPQAIINEMMAGLT 448

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                  +   +R  AI TA  +   +DV++VAGKGHET   + +G +    D + +R  
Sbjct: 449 PEEQAQCLTNVDRRSAIATACRLATPRDVILVAGKGHETYQEI-HGVRHHFDDREELRLA 507

Query: 493 LG 494
           L 
Sbjct: 508 LR 509


>gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 495

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 150/473 (31%), Positives = 217/473 (45%), Gaps = 12/473 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  +  DSR +  G  FVAI G    G  F+ QA A GA A++              
Sbjct: 19  DVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQAHANGAGAVLFEPPAPNGMPVPAD 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 + V   R  L + A + +G+      ++ VTGT+GK+S    + Q     G  +
Sbjct: 79  A-----IAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNGKTSTVQLLAQALTLLGTPT 133

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A      TTP  +     L+ L  +G   V++E SSH LDQ R+D + 
Sbjct: 134 GTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVH 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+DYH     Y  AK +LF     K +   +      +          
Sbjct: 194 FDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDAFGRTLFASLDPALR 253

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V S       +  + +   HN     ++++G+      PL G F V N L  AG   
Sbjct: 254 AIGVSSRAQADASVSAQALQLDHNGINFALNIQGEVHPVHSPLLGRFNVDNLLAVAGALW 313

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+ I  A +   L +L  + GR   +G       + VDYAHT ++LE  L ++R+    R
Sbjct: 314 ALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDALEQALSSLRSHAQDR 373

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFI 440
           +I VFGCGG+RD GKRP M  IA   AD+AIVTDDNPRSED + I A+I+ G       I
Sbjct: 374 LICVFGCGGERDTGKRPQMAAIAELNADVAIVTDDNPRSEDGDAIVADILRGFARPDAAI 433

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + +R  AI  AI M +  D++++AGKGHE    V  G +    D  +  + L
Sbjct: 434 VQRDRAAAIHQAIGMASASDIVLIAGKGHEPYQEVA-GVRHAFDDAIVAAQAL 485


>gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila abortus S26/3]
 gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila abortus S26/3]
          Length = 483

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 135/502 (26%), Positives = 229/502 (45%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++S         ++  ++ DSR++  G IF+A  G   DG+ F 
Sbjct: 1   MNLKELLHNTKAKIYGKISS-------VEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+  GA A+  S                  ++  +  +  +  A++ YG   +   ++
Sbjct: 54  HLAVENGAIAVASS--------IYNPFLPVVQIISSDLPRLEADLAAKYYGHPSQKLCVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  ++ +       +  IG    I  +    +  TTP    L K L+ +
Sbjct: 106 GITGTNGKTTVSHLIKLLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAKM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               ++   +E SS GL  +RL  +    G  TNL  DH+D+H + + Y  AK++LF  L
Sbjct: 166 VKSHLSAAVMEVSSIGLAVNRLANVDFDVGVLTNLTLDHLDFHSSFEEYKQAKLKLFSML 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +       ++ +          +     Q        V          +  +G
Sbjct: 226 PSSGLAVVNNDLCDAAQFIEA---TQAQPITYGIEQHADYQASHVRFSPFGTDFDLLYKG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + F    PL G+  +YN L A  +       D   ++  +  +    GR E     S   
Sbjct: 283 ETFACYSPLIGQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGRLE--PIFSGPC 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            IY+DYAHT ++L+ + + ++ +    GR+IVVFGCGGDRDQ KR IM ++       A+
Sbjct: 341 PIYIDYAHTPDALDNVCQTLQALLPQDGRLIVVFGCGGDRDQSKRKIMAQVVEKYG-FAV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR EDPEKI  EI  G     F  + +R +AI  A+ + + +D+++VAGKGHET 
Sbjct: 400 VTTDNPRGEDPEKIINEICSGFLKRNFSIEIDRKQAITYALSIASDRDIVLVAGKGHETY 459

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I  +       D +I+  +L 
Sbjct: 460 QIFKHQTIA-FDDKEIVLGVLS 480


>gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
 gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
          Length = 485

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 205/498 (41%), Positives = 280/498 (56%), Gaps = 23/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L   D        +    +  E  +  ++ DSR ++ G +F A+ G K DG  F 
Sbjct: 1   MKLRELFGDD--------AAMDARTGELAVTGLAVDSREVKPGDLFFALAGTKTDGARF- 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                   +A + + A ++    A   +  P +   N R+ L+L A++ Y + P  I AV
Sbjct: 52  -------IDAAIAAGAVAVVGDHAPAGACVPSVATSNPRRALALAAAKFYPRQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR G  S  IG    +  S A    +TTP PI L + L  L  
Sbjct: 105 TGTSGKTSVAAFTRQIWQRLGHPSASIGTIGVVAPSRAVYGSVTTPDPISLHRELDQLVG 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ+RLDG+++ A  FTNL RDH+DYH T   Y + K+RLF +L+ 
Sbjct: 165 EGVTHLALEASSHGLDQYRLDGVRVRAAGFTNLSRDHMDYHPTVAHYLDTKLRLFRDLVE 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISV 295
            +  A+I AD   S  V++ A     R++ VG +G   H    L         Q+VT+  
Sbjct: 225 PDGVAVISADHDCSGTVIEAASARNVRIMRVGRRGDGTHSGIRLADAVIEGFAQRVTLEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G++     PL GEFQ+ NALV+AGL I  G D+  V   LE L    GR E VG    G
Sbjct: 285 AGRERIIRLPLVGEFQIENALVSAGLVIGTGGDADQVFAALEHLEGAKGRLELVG-ERNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             ++VDYAH  ++L   L+ +R   S +++VVFG GGDRD GKRP+MG++A   AD+ IV
Sbjct: 344 APVFVDYAHKPDALAKALQALRPYASRKLVVVFGAGGDRDAGKRPLMGEVAAANADVVIV 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSE+P  IRA I+    G  E G+R EAIRTAI  L   D L++AGKGHET  IV
Sbjct: 404 TDDNPRSENPAAIRAAILAAATGAREIGDRAEAIRTAIVGLQPGDALLIAGKGHETGQIV 463

Query: 476 TNGEKKMSVDCDIIREIL 493
            +       D D     L
Sbjct: 464 GD-RVLPFSDHDAAIAAL 480


>gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
          Length = 491

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 211/474 (44%), Gaps = 20/474 (4%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   + +DSR +Q G  F+A  G   DG  F+ QA+  GA   +V     L    A    
Sbjct: 20  VTGTLRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVE----LDGVEAFGFE 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +  +  + + +      A   +    +   ++A TGT+GK+S A +  Q   R G     
Sbjct: 76  DARVATLPDLKAVTGDIAHAYFEHPSQRLKLVATTGTNGKTSTAWWTAQALTRLGQRCGV 135

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G          +   LTTP P+ L  A      QG    ++EASS G+ +HRLD  ++ 
Sbjct: 136 MGTLGVGEPGAVRATGLTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAEID 195

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTN  RDH+DYH T  AY+ AK RLF         A +   D      +     A  
Sbjct: 196 VALFTNFTRDHLDYHGTMAAYWEAKRRLFAW---PGLKAAVINVDDEQGARLAAEPLALD 252

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                      +  + V  +      T+       +    L GE+ V+N L   G   A+
Sbjct: 253 VWTYAVNGAARLVARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLRAL 312

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSG 382
           G+  A     +  L  VPGR + V        + VDYAHT ++LE +L+ +R +     G
Sbjct: 313 GVALADAAAVVPALTPVPGRMQRVPGEHV--EVVVDYAHTPDALEKVLQALRPLAAARGG 370

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
           R+  VFGCGG+RD  KRP+MG IA  LAD  + T DNPR E P  I ++I+ G+      
Sbjct: 371 RLWCVFGCGGNRDATKRPLMGAIAARLADRVVATSDNPRDEAPCFILSQILAGVAGHDEV 430

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +R EAI  A+      DV+++AGKGHE    +  G ++   D    R  L
Sbjct: 431 DVIEDRHEAIAYAVANAAPGDVVLLAGKGHEDYQEIK-GVRRPFSDETEARAAL 483


>gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 490

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 134/496 (27%), Positives = 225/496 (45%), Gaps = 23/496 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +       ++    +      + +I+ +S+ +  ++ G +F+   G K D H  IP+ I 
Sbjct: 1   MTISTIASILKDQILKVNAPMDLEISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G                  +  + P ++V ++R F +  AS  +    ++ L    T  
Sbjct: 61  KG---------AVAVVVEREVNFDAPSILVFDSRYFEAKLASLFFEDPWKDTLTFGITGT 111

Query: 126 KSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                + +      + +             +        +TTP  I +  A+      G 
Sbjct: 112 NGKTTTTLMIYHMLTSMGVKGSALTTVLKNVLGKTYYEDITTPDAITVLSAMKENKDGGG 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              ++E SSH L Q R++G++   G FTN+ RDH+D+H T + Y  AK+ LF+ L     
Sbjct: 172 RFFALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGF 231

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +  +       +    H    +V     +     L  +          +         
Sbjct: 232 AVLNES-------LSDALHRRVRKVTFGTSRNANYRLGNIEVSWEGTSFVLETPDGFLKV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVD 361
                G+F  YNA  A      +G D   + E LE    V GRFE V      G  + VD
Sbjct: 285 FTRAIGDFNAYNAAAAIAALHQLGFDPKELAESLESFTGVEGRFEVVKAAKKSGFNVIVD 344

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +AH+ ++LE +LKN+R I+ GR+IVVFG GG+ D+GKRP+M ++  +LAD+ I+T D+PR
Sbjct: 345 FAHSPDALEKLLKNVRKISKGRVIVVFGAGGNSDRGKRPMMSRVVSELADVMILTTDDPR 404

Query: 422 SEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            EDPE+I  ++I G+     ++   +R EAI TA+ + N+ D +VVAG+GHE   I+ + 
Sbjct: 405 GEDPEQIMEDLIKGVDKNKPYLVLFDRKEAIETALTIANRGDTVVVAGRGHERYQIIDDE 464

Query: 479 EKKMSVDCDIIREILG 494
           +K    D ++I EIL 
Sbjct: 465 KKIPFHDREVIEEILR 480


>gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
          Length = 485

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 219/498 (43%), Positives = 287/498 (57%), Gaps = 23/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DLI  D        +         ++  V+ DSR ++ G +F A+ G+K DG  FI
Sbjct: 1   MKLRDLIGND--------AAIEPAVAALEVTGVALDSRVVRPGDLFFALAGSKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A        + A ++    A      P + V N R+ L+L A+R +   P  I AV
Sbjct: 53  DAAVA--------AGAVAIVGDHAPDGCKVPFIAVANPRRALALAAARFFPAQPATIAAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI +R G +S  IG    +S        LTTP PI L + +  ++ 
Sbjct: 105 TGTSGKTSVAAFTRQIWERLGHASASIGTIGLVSPKRTVYGSLTTPDPIALHRQMDEIAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T   Y  AK+RLF EL+P
Sbjct: 165 EGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRELVP 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
               A+I AD   S E +  A   G RV++VG  G      I L +V      Q++T+  
Sbjct: 225 PGGAAVISADHDCSAEAIDAAKARGLRVMAVGRNGDGAGEGIRLTEVGVDGFSQKLTVEH 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            GK +  L PL GEFQV NALV+AGL I  G D+A V   LE L    GR E VG    G
Sbjct: 285 RGKRYVVLLPLAGEFQVENALVSAGLAIGTGSDAANVFASLEHLEGAKGRLERVG-ERNG 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I+VDYAH  ++L   L+ +R     R++VVFG GGDRD GKRPIMG+IA + AD  I+
Sbjct: 344 APIFVDYAHKPDALAKALQALRPYAKRRLVVVFGAGGDRDAGKRPIMGEIAAENADGVII 403

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSE PE IRA I+    G  E G+R  AIR AIE L + D L++AGKGHET  IV
Sbjct: 404 TDDNPRSEQPEAIRAAILATAKGAREIGDRAAAIRAAIEELEQGDALLIAGKGHETGQIV 463

Query: 476 TNGEKKMSVDCDIIREIL 493
            + E     D + +   L
Sbjct: 464 GS-EVLPFSDHEAVAAAL 480


>gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 514

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 155/482 (32%), Positives = 225/482 (46%), Gaps = 26/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKE----DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V        DG   IPQAI  GA A++         ++    
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAE----AHGYTMPAD 87

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +   IL VD   +     A++ YG        ++ VTGT+GK+S + ++ Q   + G   
Sbjct: 88  APVRILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L+ L   G   +++E SSHGL+Q R+DG  
Sbjct: 148 AVVGTLGTGFVDALAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTC 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257
                FTNL +DH+DYH T   Y  AK RLF         + ++  A +        ++ 
Sbjct: 208 FDIAVFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLQNARADIE 267

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +       +     +++    V A        +           P  G F V N L 
Sbjct: 268 TIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLA 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G  +  G+     + HLEKL  V GR E  G    G  + VDYAHT ++LE  L+ + 
Sbjct: 328 VLGALLTAGVPWPDAIAHLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386

Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I  EI  
Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILDEIAD 446

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+       +  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + +R 
Sbjct: 447 GMHNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505

Query: 492 IL 493
            L
Sbjct: 506 AL 507


>gi|120404500|ref|YP_954329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957318|gb|ABM14323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 497

 Score =  286 bits (731), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 148/476 (31%), Positives = 224/476 (47%), Gaps = 11/476 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + ++  V+   +  Q G +F A+ G++  G  +  +A+ +GA A++  +A   +  ++ 
Sbjct: 17  PDVQVTGVTLRGQDAQPGDLFAALPGSRAHGGRYAAEAVGRGAVAVLTDAAGEAE-IASR 75

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
              + P+LV  + R  L   AS +YG+  +   ++ VTGTSGK++    V+   + +G  
Sbjct: 76  GAPDVPVLVHPDPRAVLGELASAVYGRPSQHLRVIGVTGTSGKTTTTYLVEAGLRAAGRV 135

Query: 144 SFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG          Q   LTTP    L   L+ +  QGV  V +E SSH L   R+DG+
Sbjct: 136 AGLIGTVGVRIDGRQQPGGLTTPEAPELQALLATMLEQGVDTVVMEVSSHALTLGRVDGV 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G FTNL RDH+D+H T + YF+AK RLF+      +   +   D      M     
Sbjct: 196 SFAVGGFTNLSRDHLDFHPTMEDYFDAKARLFDPACATHAARSVICVDDEWGRAMAARAR 255

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V + G         +      +  V +   G        LPG + V N L+A  L 
Sbjct: 256 RPVTVSTTGPADWRAEQVRSAGGGAQDFVAVDPAGVHHGLEIGLPGGYNVANCLLAIALL 315

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+G+        +    V PGR E V          VDYAH   +L  +L+ +R   +G
Sbjct: 316 DAVGVSPEQAAPGVRDATV-PGRLESVDRGQ-PFLALVDYAHKPGALRAVLQTLREQCTG 373

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE----KIRAEIIHGIPG 438
           R+ VVFG GG+RDQGKR  MG++A +LAD+ +VTDDNPR EDP      I A        
Sbjct: 374 RLAVVFGAGGNRDQGKREPMGRVAAELADLVVVTDDNPRDEDPAVIRAAILAGAAGARAE 433

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +E G+R  AI  A       D++++AGKGHE     + G+ +   D D +   L 
Sbjct: 434 VVEIGDRRAAIGHAAGWARAGDIVLIAGKGHEAGQT-SGGQTRPFDDRDELAAALE 488


>gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI18]
 gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID1]
 gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID24-1]
 gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
          Length = 492

 Score =  286 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 147/470 (31%), Positives = 217/470 (46%), Gaps = 16/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+  GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + N +    + A+++Y    +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM---KRAHNAGCR 266
           TNL RDH+DYH T +AY    ++           AII  DD Y  E++   K+       
Sbjct: 203 TNLTRDHLDYHGTMEAYG--AIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCPDLAV 260

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +   I +    A  +  +        +      L G F   N      L  A G
Sbjct: 261 YSYGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANG 320

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RI 384
                VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +
Sbjct: 321 YPLDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAAL 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKG 443
             VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + 
Sbjct: 380 WCVFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|289745330|ref|ZP_06504708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
 gi|289685858|gb|EFD53346.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 535

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 39  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 99  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      + 
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D  +   M         V +      +            QQ T          +
Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    VDY
Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 393

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR 
Sbjct: 394 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 452

Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET     
Sbjct: 453 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 511

Query: 477 NGEKKMSVDC 486
            G  +   D 
Sbjct: 512 GGRVRPFDDR 521


>gi|297634747|ref|ZP_06952527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|306776408|ref|ZP_07414745.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|306789299|ref|ZP_07427621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|307080227|ref|ZP_07489397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
 gi|308370928|ref|ZP_07667049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308373338|ref|ZP_07667556.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308374507|ref|ZP_07436318.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308215196|gb|EFO74595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|308330355|gb|EFP19206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308334189|gb|EFP23040.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|308338021|gb|EFP26872.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308341706|gb|EFP30557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308361978|gb|EFP50829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
          Length = 517

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 21  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 80

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 81  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      + 
Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D  +   M         V +      +            QQ T          +
Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    VDY
Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 375

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR 
Sbjct: 376 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 434

Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET     
Sbjct: 435 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 493

Query: 477 NGEKKMSVDC 486
            G  +   D 
Sbjct: 494 GGRVRPFDDR 503


>gi|215403433|ref|ZP_03415614.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 517

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 21  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 80

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 81  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      + 
Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D  +   M         V +      +            QQ T          +
Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    VDY
Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 375

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR 
Sbjct: 376 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 434

Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET     
Sbjct: 435 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 493

Query: 477 NGEKKMSVDC 486
            G  +   D 
Sbjct: 494 GGRVRPFDDR 503


>gi|15609295|ref|NP_216674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Rv]
 gi|31793338|ref|NP_855831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis AF2122/97]
 gi|121638040|ref|YP_978264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661974|ref|YP_001283497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Ra]
 gi|148823367|ref|YP_001288121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis F11]
 gi|161350069|ref|NP_336687.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|224990534|ref|YP_002645221.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798777|ref|YP_003031778.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289554055|ref|ZP_06443265.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|306968293|ref|ZP_07480954.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308375793|ref|ZP_07445136.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308376926|ref|ZP_07668382.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308379133|ref|ZP_07485181.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|54037860|sp|P65478|MURE_MYCBO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041509|sp|P65477|MURE_MYCTU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2104320|emb|CAB08669.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat
           e ligase MurE [Mycobacterium tuberculosis H37Rv]
 gi|31618930|emb|CAD97035.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis AF2122/97]
 gi|121493688|emb|CAL72163.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148506126|gb|ABQ73935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate MurE
           [Mycobacterium tuberculosis H37Ra]
 gi|148721894|gb|ABR06519.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis F11]
 gi|224773647|dbj|BAH26453.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320280|gb|ACT24883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289438687|gb|EFD21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|308345197|gb|EFP34048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308349468|gb|EFP38319.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308354099|gb|EFP42950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308358073|gb|EFP46924.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|326903775|gb|EGE50708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis W-148]
 gi|328458540|gb|AEB03963.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 4207]
          Length = 535

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 39  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 99  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      + 
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D  +   M         V +      +            QQ T          +
Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    VDY
Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 393

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR 
Sbjct: 394 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 452

Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET     
Sbjct: 453 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 511

Query: 477 NGEKKMSVDC 486
            G  +   D 
Sbjct: 512 GGRVRPFDDR 521


>gi|254232316|ref|ZP_04925643.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|294993544|ref|ZP_06799235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 210]
 gi|297731736|ref|ZP_06960854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659071|ref|ZP_07815951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|124601375|gb|EAY60385.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|323719274|gb|EGB28417.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis CDC1551A]
          Length = 521

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 25  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 84

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 85  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 201

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      + 
Sbjct: 202 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 261

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D  +   M         V +      +            QQ T          +
Sbjct: 262 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 321

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    VDY
Sbjct: 322 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 379

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR 
Sbjct: 380 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 438

Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET     
Sbjct: 439 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 497

Query: 477 NGEKKMSVDC 486
            G  +   D 
Sbjct: 498 GGRVRPFDDR 507


>gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167710342|gb|EDS20921.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SSC/2]
 gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 485

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 137/501 (27%), Positives = 233/501 (46%), Gaps = 25/501 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L+ +    L+           + +I+ +  DSR I+ G +FV I G   DGH F+
Sbjct: 1   MILKELLERSEYTLVQGS-------EDVEISTLVYDSRKIEKGSVFVCISGAAFDGHKFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            QA   GA A+VV     + +       N  ++  DNTR  L+  ++  +G   E    +
Sbjct: 54  AQAAELGAAAVVVEKDVEVPE-------NLTVIKFDNTRLALAEMSAAYFGYPAEELTTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ + + +G  +  IG   TI       +  TTP    + ++   +
Sbjct: 107 GITGTKGKTTTTYMIRAVLEHAGQKTGLIGTIETIIGDERIPSVNTTPESYIVQESFRKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G+ +V +E SS  L  HR  G +   G FTNL  DHI  ++ +        +     
Sbjct: 167 ADAGLKNVVMEVSSQALMLHRTSGFEFDYGIFTNLAEDHIGENEHKDMDDYIHCKSLLFK 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K+       DD   + +           +         ++ ++               
Sbjct: 227 QCKQGIVNGD-DDYVERIIKDHTCAIETYGMKDTNDVYAENITRIQEPGYLGVAYDLKGK 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++++    +PG+F VYN+L A  LC  +GI    VL  L  + V  GR E +        
Sbjct: 286 QEYNVHVDIPGDFTVYNSLAAISLCRHMGIVKEDVLSALNTIQV-KGRLEIIK-TPGDYT 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAH + SLE +L  IR     +I  +FGCGG+R + +R  MG+++  LAD+ +VT 
Sbjct: 344 LMIDYAHNAMSLESLLTTIRKYNPKKIYCLFGCGGNRAKARRYEMGEVSSKLADLTVVTS 403

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+E+P  I  +I+ G+      ++   +R EAI+  +E     D++++AGKGHE   
Sbjct: 404 DNPRNEEPMDIINDILIGVHKADGEYVTIPDRKEAIKYCMEHAGAGDIVILAGKGHEDYQ 463

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            +  G K    + D+I+EI+ 
Sbjct: 464 EIK-GVKHHMDERDLIQEIIE 483


>gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-92-679]
 gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 492

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 216/468 (46%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA      DG  +IP A+A GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACQVEYTDGRSYIPAAVANGAAFVFWDDDG---RFAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + +    + A+++YG   +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKDLKHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P+ I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|13881902|gb|AAK46501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 581

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 148/490 (30%), Positives = 220/490 (44%), Gaps = 17/490 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 85  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 144

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 145 GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 201

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 202 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 261

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      + 
Sbjct: 262 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 321

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D  +   M         V +      +            QQ T          +
Sbjct: 322 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 381

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    VDY
Sbjct: 382 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 439

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR 
Sbjct: 440 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 498

Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET     
Sbjct: 499 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 557

Query: 477 NGEKKMSVDC 486
            G  +   D 
Sbjct: 558 GGRVRPFDDR 567


>gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306937|pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306938|pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306939|pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis
 gi|303324784|pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324785|pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324786|pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324787|pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
          Length = 535

 Score =  286 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 147/490 (30%), Positives = 219/490 (44%), Gaps = 17/490 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 39  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 99  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF A   LF+      + 
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRAR 275

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D  +   M         V +      +            QQ T          +
Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    VDY
Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDY 393

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR 
Sbjct: 394 AHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRD 452

Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET     
Sbjct: 453 EDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RG 511

Query: 477 NGEKKMSVDC 486
            G  +   D 
Sbjct: 512 GGRVRPFDDR 521


>gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
          Length = 497

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 134/498 (26%), Positives = 223/498 (44%), Gaps = 21/498 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL+     ++    +I   Q  + +I+++  DSR      IFVAI G   DGH +I
Sbjct: 1   MKLKDLLK----DIEYISNIKESQLEDIEISDIVYDSRKAVKDSIFVAIKGETVDGHDYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A  +G+   +++    ++D +         ++V ++R+ LS  ++  + +  +   ++
Sbjct: 57  KGAYDKGSRVFIINHDLEIEDDAIK-------IIVPDSRRVLSRMSAIFFSEPTKKLKVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            +TGT GK++++++++ +  +SG+++  IG      +   +  L TTP    L K +  +
Sbjct: 110 GITGTKGKTTISNYIKTVLTKSGMNTGVIGTNGVFYNDVAEKTLNTTPESYELQKTIKEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V++E SS GL   R+D I    G +TNL  DHI   +        + +     
Sbjct: 170 LDAGVECVAMEVSSSGLMMGRVDDIDFDIGVYTNLSPDHIGPKEHPTFEHYRECKSRLFG 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L K     +  ++A       +    G         +   I L +  A           +
Sbjct: 230 LCKYGIINVDDENAQYMVDHAKCPTCGFSIDKESNIKAGNIELTRSSASLGVDFDYKLKD 289

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                     PGEF +YNAL   G+C   GID   +LE L    V  GR E +       
Sbjct: 290 QDTVRTHICSPGEFSIYNALAVIGVCDHFGIDRDKMLEALSDAKVD-GRVEVIPVL-DNA 347

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH   SLE +L  +      R+I V+G  G R   +R  +G +A  L D++I+T
Sbjct: 348 TVILDYAHNGLSLENVLDTLLKYDHNRMICVYGSIGGRAAIRRKELGDVAARLCDVSIIT 407

Query: 417 DDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNP  EDP KI  EI            +  +R EAI  A+EM    D+++V GKGHE  
Sbjct: 408 TDNPDDEDPMKIIDEIAESYVGSDSEVHKVVDRAEAIYKALEMAEDGDMVLVTGKGHEKY 467

Query: 473 HIVTNGEKKMSVDCDIIR 490
             +           ++I+
Sbjct: 468 QYIHGQRVFYDEKAEVIK 485


>gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
 gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
          Length = 495

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 153/490 (31%), Positives = 223/490 (45%), Gaps = 16/490 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+  
Sbjct: 7   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                             + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 67  PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G+ S   G               TTP  + L + L+ L  +G   V++E SS
Sbjct: 122 LAQAWHCLGVRSATCGTLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF         A+I  DD 
Sbjct: 182 HALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAH--QDVQAAVINVDDP 239

Query: 252 YSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++           V   G+    +  + +          + +         PL G 
Sbjct: 240 FGLRLLHGLAKGMRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGR 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L
Sbjct: 300 FNVDNLLAVAGVLYALNYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDAL 359

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+  VTDDNPR ED + I 
Sbjct: 360 GQVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIV 419

Query: 430 AEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G         + +R  AI  AI + + +DV+++AGKGHE    V  G +    D 
Sbjct: 420 ADILAGFARPNVVKVQRDRSAAIAAAIGIASAEDVVLIAGKGHERYQEVA-GVRHPFDDT 478

Query: 487 DIIREILGLI 496
           ++ R +L  +
Sbjct: 479 EVARRVLAAM 488


>gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
 gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
          Length = 491

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 135/502 (26%), Positives = 219/502 (43%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+ +   E++           + +I  + +DSR ++ G +FV I G   DGH ++
Sbjct: 1   MILKQLLERLEYEVVQGSD-------KIEITTLINDSRKVEEGSVFVCISGAVSDGHQYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                +GA+A++V              +   ++ V++TR  L+L ++  +G   E +  +
Sbjct: 54  ADVAKKGAKAVIVQQDVEA-------PAGMTVIRVEDTRYALALASAAYFGYPAEKLHII 106

Query: 121 TGTSGKSSVASFVQQICQRSG--LSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +         G       IG   + I         TTP    + +  + +
Sbjct: 107 GITGTKGKTTTTYMIKSILEGVGHKVGLIGTIEAIIGEEVIPAANTTPESYTIHQYFAKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  GI    G FTNLG+DHI      +       +  + L
Sbjct: 167 VEAGCDSVVMEVSSQGLMLHRTAGIPFEIGIFTNLGKDHIGP---NEHKDFEDYKRCKGL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISV 295
           L ++    I   D    + + +             +   +   +  V             
Sbjct: 224 LFQQCRVGIANADDRYFKDVFKNATCKVETFGFCKEADLRAEDVNLVSRPGYLGVAYHVA 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PG F VYN+L A  +C    +    +   L+K  V  GR E V  +   
Sbjct: 284 GVMDFDVEIDVPGTFSVYNSLTAIAVCRHFDVPKEHIQAALKKAKV-KGRIEMVKVSDE- 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 342 FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRSRDRRFEMGEVSGRLADLTII 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P+ I  +I  GI      ++E  +R EAIR AI      +V+V+AGKGHE 
Sbjct: 402 TSDNPRFEEPQAIIDDIKVGIEKTDGAYVEIIDRKEAIRYAITHGQTGEVIVLAGKGHED 461

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    +  +I EIL
Sbjct: 462 YQEIE-GVKHPMDERVLIAEIL 482


>gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
 gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
          Length = 518

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 144/512 (28%), Positives = 234/512 (45%), Gaps = 34/512 (6%)

Query: 7   IYKDFPELINQL----SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           I     +L+  +    +         K++ VS D+R + AG +F+A+ G+K DG  FI +
Sbjct: 4   IEITIAQLLQGVWLAEAPLDASVANIKVSGVSLDNRTLSAGSVFIAVPGDKVDGRAFIEK 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
             +  A AI+  +     D +       P++ +   ++ +S  A+  YG       I+ +
Sbjct: 64  CDSATA-AILAEADTFGVDLTGA----VPVVHIPQLKQKISRVAANFYGHPSRSLTIIGI 118

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------DNRLTTPSPIYLAKA 173
           TGT+GK++ A  + Q+  +   S   +G                 D  LTTPS +   K 
Sbjct: 119 TGTNGKTTCAYLLAQLLSKLQFSCGMVGTLGFAKFDECGAPVNLTDTGLTTPSALDCQKI 178

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+    Q V  V++E SSHGL Q R+  +      FTNL RDH+DYH + + Y  A  + 
Sbjct: 179 LAE-LQQQVGAVAMEVSSHGLAQGRVADVDFNGAIFTNLSRDHLDYHASLEEY--AATKA 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG---------YQGKFIHLKKVCA 284
                 + S  +I ADDA    ++           S                I    +  
Sbjct: 236 ALFAREELSFVVINADDAVGVNILTNGVAPQAITYSYSLGGEQALVAQSENTIVAHSIEW 295

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             ++    +       +    L G + + N L       A+G     V+  ++ L   PG
Sbjct: 296 GSSQTVAQLHTPWGAAELATGLVGRYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPG 355

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + V ++ +   ++VDYAHT ++LE +L  +   T G++ VV GCGG+RD GKRP+M +
Sbjct: 356 RLQRVNSSEQPLAVFVDYAHTPDALEKVLSEVAAYTQGKLWVVIGCGGNRDVGKRPLMAE 415

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDV 461
           +A  LA+  ++T DNPR E+PE I  +++ G+      +   +R  AI  A+    + D 
Sbjct: 416 VAERLANCVVLTSDNPRDENPELILKDMLAGLKNKDAAMVIADRKNAIEYAVANAAENDA 475

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +V+AGKGHE   +V  GEK    D  I +E L
Sbjct: 476 IVIAGKGHENYQLVK-GEKLPFDDALIAKEFL 506


>gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
 gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
          Length = 506

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 142/495 (28%), Positives = 225/495 (45%), Gaps = 22/495 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL           +  ++ DSR ++ G ++ A+ G +  G  F+ QA + GA A
Sbjct: 17  LAELADQLGAAQPDRT-ADVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAASLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++     + +       +  P+L V++ R  +   A+ LYG+   +   + +TGTSGK++
Sbjct: 76  VLTDPGGAER----AAATGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   + +  +       + I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLVEGGLKTAKATGLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG       FTNL  +H+++H   + YF AK +LF     +       A
Sbjct: 192 VSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPARSRLGIVN--A 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
           DD Y + + + A        + G+       + V         T++           PLP
Sbjct: 250 DDEYGRRLAEEATVPVVTYSAEGHPDADWRAEDVQVGPMDSTFTVTGPEGVRVSARSPLP 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D+    + +  +  VPGR E V          VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDAQTAADGIAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T GR+ VV GCGGDRD+ KR  MG     LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTKGRVHVVLGCGGDRDRTKREPMGAAVARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           I A ++ G         R E +           A+      D ++VAGKGHE    +  G
Sbjct: 429 ILAAMLQGAASV-PAHERGEVLLFEERAAAIAAAVARARPGDTVLVAGKGHEQGQDIA-G 486

Query: 479 EKKMSVDCDIIREIL 493
             +   D  ++RE +
Sbjct: 487 VVRPFDDRQVLREAI 501


>gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 486

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 205/492 (41%), Positives = 269/492 (54%), Gaps = 22/492 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+           +    +     ++ ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLHDLL--------GDAAGRDPEIAAVDVSGLAVDSRAVRPGDLFFALSGAKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    AI   +             + P + + N R  L++ A+R Y + P  I AV
Sbjct: 53  A-------AAIAAGAIAVAGGSPPGTALSVPYVELPNPRLALAMAAARFYPRQPATIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI Q+ G SS  IG    +S        LTTP PI L + +  ++ 
Sbjct: 106 TGTSGKTSVAAFTRQIWQKLGHSSASIGTVGLVSDKRTVYGSLTTPDPIALHRQIDEITQ 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            GVTH++ EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +L+P
Sbjct: 166 DGVTHLAFEASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVP 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISV 295
               A+I AD   S +VM  A     R+++VG  G      I L         QQ+ +  
Sbjct: 226 PGGAAVISADHECSADVMAAAQARDLRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQH 285

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+ +    PL G FQV NALVAAGL I  G D   V E LE L    GR E VG    G
Sbjct: 286 CGRMYTIRLPLVGAFQVENALVAAGLAIGTGSDPQAVFEALETLEGAKGRLELVG-EHNG 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I++DYAH  ++L   L+ +R   + +++VVFG GGDRD GKRP+MG IA   AD  IV
Sbjct: 345 APIFIDYAHKPDALAKALQALRPYAARQLVVVFGAGGDRDTGKRPLMGAIAAAEADRVIV 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           TDDNPRSEDP  IRA I+   PG  E G+R EAI+ AI  L   D LV+AGKGHE   I+
Sbjct: 405 TDDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIKVAIGELQPGDALVIAGKGHEVGQII 464

Query: 476 TNGEKKMSVDCD 487
             G      D +
Sbjct: 465 G-GTTLHFSDHE 475


>gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
 gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
          Length = 499

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 139/484 (28%), Positives = 227/484 (46%), Gaps = 30/484 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           W  +  N    DSR + +G IF+A+       K     F  +A+  GA A++  SA  L+
Sbjct: 17  WVSQPFNGFCLDSRKVASGQIFIALNSYSQPEKT--IEFAQKALDSGALAVISESALGLK 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQI 136
           +            V    R  +  +  +             +AVTGT+GK++++  V ++
Sbjct: 75  NE----------WVCPQVRYLMGEWQKQYLQASEPVQALRGVAVTGTNGKTTISRLVAEL 124

Query: 137 CQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               GL    +G T          +  TT   + L  AL   + QG   V++EASSHGL+
Sbjct: 125 ISSQGLGCAVMGTTGNGILPNLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLE 184

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q RL+G  +    ++NL RDH+DYH T  AY  AK  LF+    K     +    A    
Sbjct: 185 QGRLNGCDIEIAVYSNLSRDHLDYHGTLDAYAEAKALLFKFATLKAVVINLDDQYASIML 244

Query: 256 VMKRAHNAGCRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              + + +  ++L+          H+  +    +    T+      +    PL G+F V 
Sbjct: 245 KAAKNNPSQPKILTYSLTQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLGQFNVE 304

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L +       G D A +++ + +L   PGR +            VDYAHT ++L  +L
Sbjct: 305 NLLASLIAAEYAGFDLADLVKFVPELKGAPGRMQV--IQDHERLFVVDYAHTPDALIQVL 362

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             ++   +G++  VFGCGGDRD+GKRP+M + ALD A+  ++T DNPR+E+PE+I A++ 
Sbjct: 363 TTLKRHVTGQLWAVFGCGGDRDRGKRPLMTQAALDYANPVVLTSDNPRTENPEQIFADMK 422

Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           HG+        E  +R EAI+  ++     D++V+AGKGHE    + +G +    D   +
Sbjct: 423 HGVDFDGHQIDEIHDRREAIKFVVKQAQAGDIVVIAGKGHENYQEI-DGVRHWFDDVVEV 481

Query: 490 REIL 493
           +  +
Sbjct: 482 QSAI 485


>gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
 gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
          Length = 499

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 142/492 (28%), Positives = 238/492 (48%), Gaps = 30/492 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG--NKEDGHLFIPQAIAQGAEAIVVSSA 76
               ++W  +  +    DSR +QAG IF+A+    +     +F   A++QGA  I+  S 
Sbjct: 11  GNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSHSNKTRIFAENALSQGALGIISESD 70

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASF 132
             +          T   V    R+++  +  +        +   ILAVTGT+GK++++  
Sbjct: 71  LGV----------TTAWVCPQVRQWMGGWQKQYLQATQPVNSARILAVTGTNGKTTISRL 120

Query: 133 VQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + ++          +G T          +  TT   + L  AL   SSQG   V++EASS
Sbjct: 121 IAELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFVALEASS 180

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGL+Q RLDG ++    ++NL RDH+DYH T  AY +AK  LF+    +   A+I  DD 
Sbjct: 181 HGLEQGRLDGCEIEIAIYSNLSRDHLDYHGTLAAYADAKALLFKFATLRS--AVINLDDD 238

Query: 252 YSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           Y+  +++ A     R      S+ +      +  +       +  +     ++    PL 
Sbjct: 239 YAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLEGAKFKLIAPTGEYVVQSPLL 298

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F + N + +       G   + +L  + +L   PGR + +    R     VDYAHT +
Sbjct: 299 GQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDVER--LFVVDYAHTPD 356

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L  +L  ++     ++  +FGCGGDRD+GKRP+M + AL+ AD  I+T DNPR+E PE+
Sbjct: 357 ALTQVLVTLKRHVQNQLWAIFGCGGDRDRGKRPLMTQAALNDADPVILTSDNPRTESPEQ 416

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I A++ +G+        E  +R EAI+ A++     D++V+AGKGHE    + +G +   
Sbjct: 417 IFADMKNGVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKGHENYQEI-DGVRHWF 475

Query: 484 VDCDIIREILGL 495
            D   ++  L +
Sbjct: 476 DDVVEVQSALEV 487


>gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
 gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
          Length = 488

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 153/484 (31%), Positives = 235/484 (48%), Gaps = 13/484 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            F +   E+ +N +  DSR +QAG +F+ ++G++ DG  F  QA+A GA  +++ S    
Sbjct: 7   YFAISLLEQPLNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQ 66

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                    N P + V      LS  A   Y    + +  + VTGT+GK++VA+ + Q  
Sbjct: 67  DQARIEWHDNIPFIYVYRLAHQLSSLAGAFYHHPSQKVTLVGVTGTNGKTTVANLLTQWT 126

Query: 138 QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G  S  +G          +    TT S + + + L+   +     V++E SSHGL Q
Sbjct: 127 HLLGKKSAVMGTIGNGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGLVQ 186

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+D ++  A  FTNL RDH+DYH T QAY +AK  LF             ADD   K+ 
Sbjct: 187 HRVDALQFAAAVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNRIIN--ADDEVGKQW 244

Query: 257 MKRAHN---AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +++  +      +        +++    +        +T+        F   L GEF V 
Sbjct: 245 LQQMDDAIEVSLQSDFQPQHKRWLKATNLVYHQQGVTITVDSSWGKAVFHSQLIGEFNVC 304

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L+A    +++G   + + + + +L  V GR E   T        VDYAHT ++L+  L
Sbjct: 305 NLLLATATLLSLGYSLSCLSDSVNQLQGVCGRME-CFTAEGRPTAIVDYAHTPDALDKAL 363

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  R    G++  VFGCGGDRD+GKRP M KIA  LAD  ++TDDNPR+ED   I  +I+
Sbjct: 364 RAARLHCDGQLWCVFGCGGDRDKGKRPQMAKIAEQLADHIVITDDNPRTEDAAAIINDIV 423

Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G+           R +A+  A    N  DV++VAGKGHE   I+ +  K    D +I+ 
Sbjct: 424 QGLDFPNNATIIHQRKQALVYAFACANANDVILVAGKGHEDYQIIGH-TKHHFSDREIVS 482

Query: 491 EILG 494
           ++L 
Sbjct: 483 QLLN 486


>gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 537

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 143/502 (28%), Positives = 230/502 (45%), Gaps = 25/502 (4%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL +QL +   +  E   +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA 
Sbjct: 17  LAELADQLGVDAPEASEGAAVTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAV 76

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A++   A + +       +  P+L VDN R  +   A+ +YG+   +   + +TGTSGK+
Sbjct: 77  AVLTDPAGAER----AAATGLPVLAVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKT 132

Query: 128 SVASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGV 182
           + A  ++   + +        G   T+ +   D R+    TTP    L    + +  + V
Sbjct: 133 TTAYLIEGGLKAAAKHDGGLTGLIGTVETRIGDERIKSERTTPEATDLQALFAVMRERDV 192

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF +   +  
Sbjct: 193 HSVVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAG 252

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFD 301
                 DD Y + +++++        + G+         V         T +   G+   
Sbjct: 253 VINY--DDEYGRRLIEQSEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAVGPNGESVR 310

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PLPG F V NAL A       GID     + +  +  VPGR E V          VD
Sbjct: 311 AAAPLPGPFNVANALAAVVALAVAGIDPQTAADGIAAVPGVPGRLERVDVGQ-PYLAVVD 369

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH ++++E +L+ +R +T G++  V GCGGDRD+ KR  MG      +D A++T DNPR
Sbjct: 370 YAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGAAVARYSDTAVLTSDNPR 429

Query: 422 SEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           SEDP  I A ++ G            + + +R  AI  A+      D ++VAGKGHE   
Sbjct: 430 SEDPLAILAAMLAGAAEVPAHERGDVLVEEDRANAIAAAVARAEPGDTVIVAGKGHELGQ 489

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
            +  G  +   D  ++RE + L
Sbjct: 490 DIA-GVIRAFDDRQVLREAIEL 510


>gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae MS11]
 gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
          Length = 492

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 214/468 (45%), Gaps = 12/468 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + SDSR I+ G IFVA  G   DG  +IP A+  GA  +          F+       P 
Sbjct: 26  LHSDSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGK---FAWNPEWKVPN 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + N +    + A+++Y    +   +  VTGT+GK+S+  ++ Q     G  +  IG  
Sbjct: 83  QGIKNLKHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTV 142

Query: 151 STISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++   TTP+P+ +   L     QG T  ++E SSHGLDQ R++G+   +  F
Sbjct: 143 GNGFWGALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIF 202

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGCRVL 268
           TNL RDH+DYH T +AY   K RLF     K +         A     +K+         
Sbjct: 203 TNLTRDHLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELIGRLKKDCPDLAVYS 262

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I +    A  +  +        +      L G F   N      L  A G  
Sbjct: 263 YGFSEHADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYP 322

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIV 386
              VL+ L K+    GR +    NS    + VDYAHT ++LE  L  ++ I      +  
Sbjct: 323 LDKVLDVLAKIRPASGRMD-CIMNSGKPLVVVDYAHTPDALEKALSTLQEIKPQGAALWC 381

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-EKGNR 445
           VFGCGG+RD GKRP+MG  A+  AD  +VT DNPR E+P  I  +I+  +P     + +R
Sbjct: 382 VFGCGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEADR 441

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             AIR A+E     D++++AGKGHE    V  G K    D +I+ + L
Sbjct: 442 AAAIRYAVEQAAANDIILIAGKGHENYQDVQ-GVKHRFSDLEIVGQAL 488


>gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA1]
          Length = 499

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 228/476 (47%), Gaps = 23/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR ++ G ++V + G    G  F   A+  GA A++     +    +    + 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGA----TLAAEAG 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+VVD+ R  +++ A++++G+      +  +TGT+GK++ A  V+   + +G     I
Sbjct: 72  VPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVGTI 131

Query: 148 GPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G         +       +TTP    L    + ++ +G + V +E SSH L   R+DG  
Sbjct: 132 GTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDGTC 191

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNLGRDH+D+H T   YFNAK RLF   L +        DD   +++++R    
Sbjct: 192 FDVVAFTNLGRDHLDFHNTLDNYFNAKARLFTPDLARVGVIN--VDDPRGRQLVERMQAN 249

Query: 264 GCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G + ++          +    A        +S    +      LPGEF V NA +A  + 
Sbjct: 250 GVKAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALAML 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
            A G+    V + L    V PGR E V          VD+AHT  ++   L   R+ +  
Sbjct: 310 EAAGLAFDDVADGLCSAQV-PGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVDG 368

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GR+I V G GGDRD  KR  MG+IA + ADI IVTDDNPR+EDP  IRA ++ G      
Sbjct: 369 GRLIAVLGAGGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRAAVLEGAHEAAG 428

Query: 437 PGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G I      R EAI  A+ M    DV+ V GKGHET   + + E     D ++IR
Sbjct: 429 DGVIVIDGGRRREAINEALRMAEAGDVICVLGKGHETGQNIGS-EVLSFDDREVIR 483


>gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 502

 Score =  285 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 142/496 (28%), Positives = 222/496 (44%), Gaps = 29/496 (5%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L        + +I+ ++  S  ++ G +F  + G +  G  +         E  V + A 
Sbjct: 12  LHKKISGSPDLEISGIAYHSGKVRPGDLFFCLPGTRSHGRRY--------VEEAVAAGAV 63

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           ++    A + ++  ++ V + R  L+L ++  Y  +P   LA+ G +G +   +    I 
Sbjct: 64  AVVSDMAELETSATVVTVPDVRMALALVSACFYD-YPSRELAMIGVTGTNGKTTTTYLID 122

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                S    G   T+    +        TTP    L   L  +  +GVT+ ++E SSH 
Sbjct: 123 ALLQNSGAATGLLGTVRYHIRGEEFPSLATTPEASELQAILRRMKDEGVTYTTMEVSSHA 182

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE------SPAIIY 247
           L  HR  G        TN+  DH+D+HQT   Y  +K +LF               A+I 
Sbjct: 183 LAWHRTIGCDFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGGRPRRAVIN 242

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + +    +    G  +L        +    V    +     +       +    + 
Sbjct: 243 GDDKHWQHFADQTP--GEVMLYGLSNHCHVRANDVKVERDAVNFRLETPVGGTEITLKMT 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F VYN+L A  + +  GID A +   +E +  VPGRFE V        + VDYAHT +
Sbjct: 301 GLFSVYNSLAAISVGLLEGIDLARIKAVMESVAGVPGRFELVDAGQ-NFTVIVDYAHTPD 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            LE +L+  R     R++ VFGCGGDRD+ KRP+MG+ A   +D  IVT DNPRSEDPEK
Sbjct: 360 GLENVLQAAREFAPARVLTVFGCGGDRDRTKRPLMGEAAGKYSDYCIVTSDNPRSEDPEK 419

Query: 428 IRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           I  EI+ G+        +  + +R  AIR A+E+  K DV+++ GKGHET  +  +    
Sbjct: 420 IIDEILPGLENQIDKSAYEIEPDRKAAIRRAMELAQKDDVVIITGKGHETTQVFRDHTIT 479

Query: 482 MSVDCDIIREILGLIL 497
              D  I  E++   L
Sbjct: 480 -FDDRQIAGELIRRRL 494


>gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 490

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 130/503 (25%), Positives = 220/503 (43%), Gaps = 26/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ K   E++N          +  I  +  DSR   A  +FV + G   DGH +I
Sbjct: 1   MKLSKLLEKLEYEVLNG-------NVDIDIENLVYDSRKAGALDVFVCVTGAVSDGHTYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                +G  AIVV     + +       +  ++   +TR  L+L ++  +    + +  +
Sbjct: 54  SDVAGKGVLAIVVQKDIEVTEEL----KDITLIKTADTRYALALMSAAFFDYPAKKLKTI 109

Query: 121 TGTSGKSSVASFVQQIC--QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +        ++  + +  IG   TI       ++ TTP    + K  S +
Sbjct: 110 GITGTKGKTTTTFMIRDILEKCNIKAGLIGTNETIIGDEHIPSKNTTPESFLIQKYFSQM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G + V +E SS  L  +R  GI    G FTN+  DHI      +     +    +  
Sbjct: 170 VEAGCSCVVMEVSSQALMLNRTAGILFDIGVFTNIEPDHIGP---NEHASFEEYMECKSR 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISV 295
           L K+    I   D+   + +   H        +  +      +++ +    N      + 
Sbjct: 227 LFKQCVHGIGNADSEYFDKIMEGHTCTLETYGIKNKADLKAENIRYIHEGGNITTSYNTT 286

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             ++ +    LPGEF VYN+L A  +     +D   +L        V GR E V  +   
Sbjct: 287 GTRELNIKLTLPGEFSVYNSLCAIAVSEHFNVD-DKLLLDALYNTRVAGRVEPVKVSD-D 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  +R     RI+ +FGCGG+R + +R  MG+++  +AD+ I+
Sbjct: 345 FIVMIDYAHNAMSLESLLSTLREYNPNRIVCLFGCGGNRSKLRRFEMGEVSGRMADLTII 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR EDP  I  +I  GI      ++   +R EA++ AIE   K D++V+AGKGHE 
Sbjct: 405 TSDNPRDEDPVLIMQDIETGIKKTSGSYVMMEDRGEAVKYAIEHGEKGDIIVLAGKGHED 464

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              +  G +    D +++++ + 
Sbjct: 465 YQEIK-GVRYHQTDKELVQKAME 486


>gi|194477172|ref|YP_002049351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
 gi|171192179|gb|ACB43141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
          Length = 508

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 140/507 (27%), Positives = 232/507 (45%), Gaps = 22/507 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+     +       F ++  +RKI  + ++S+ I  G +F+ + G    G  F   
Sbjct: 5   LSSLLKATNLK-------FGVELIDRKIYAICTNSKKITPGSLFIGLPGTNVSGDSFCYS 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AV 120
           A+  GA   +      + D      + T          + SL A+  + +    ++   V
Sbjct: 58  ALDSGAITALGRKIAVISDLPLVANTLTN--ADKQIAHWTSLLATNFWQQPSRWMILLGV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V   ++ +   SG  S   G   +    ++   + TTP    L   L+    
Sbjct: 116 TGTNGKTTVTHLIEHLSTASGRPSALFGTLANRWPGYSATTKNTTPFADQLQAQLALAVE 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL- 238
            G    ++E SSH L+Q+R+ G +     FTNL +DH+DYH + +AYF +K  LFE  L 
Sbjct: 176 AGSQIGAMEVSSHALNQYRVMGCQFAGAVFTNLSQDHLDYHPSLEAYFESKASLFEHPLL 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
               P  +   D      + +   + C   S+      + ++ +    N     I     
Sbjct: 236 ANHGPLAVINSDDLWGARLAQRLGSNCWRSSLRDFSAELTMRNLTFSVNGVSGIIVTPLG 295

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355
           +  F  P+ G F + N L A G+ I       + +L+ ++    +PGR E +        
Sbjct: 296 EGYFSSPMVGYFNLMNLLQAIGVLIQQKGFSLSSLLKAVKTFRGIPGRMERLIPYPNKLD 355

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + +DYAHT + LE  L   R+   G +I VFGCGG+RD+ KRPIMG+ A  LAD  
Sbjct: 356 LSPSVIIDYAHTPDGLEKALIAARSFVKGSLICVFGCGGNRDKRKRPIMGETAARLADEI 415

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           IVT DNPR+E+PE+I  +I+ GIP     + + +R  AI +++   +  D++++ GKGHE
Sbjct: 416 IVTSDNPRTENPEEIIKDILAGIPLGRKVLVEVDRSIAIMSSVSAASPNDLILIVGKGHE 475

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
              I  + +     D +   + L   L
Sbjct: 476 DYQIFRD-DSVYFEDREEAEKSLRARL 501


>gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 210/491 (42%), Positives = 278/491 (56%), Gaps = 16/491 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL   D P         P    +  +  ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MKLRDLFSDDAP---IDAQGSPRGAADLDVGGLAVDSRAVKPGDLFFALAGAKTDGARFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                    AI   +     D +       P + + N R+ L+L A+R Y + P  I AV
Sbjct: 58  A-------AAIAAGAVAVAGDHAPDGELAVPFVPLGNPRRALALAAARFYSRQPRTIAAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F + I QR G ++  IG       + +    LTTP PI L ++L  ++ 
Sbjct: 111 TGTSGKTSVAAFTRHIWQRLGHAAASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAG 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH+++EASSHGLDQ RLDG+++ AG FTNL RDH+DYH     Y NAK+RLF +L+ 
Sbjct: 171 EGVTHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVI 230

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVE 296
               A+I AD   S +V+  A   G R+++VG  G     I L +       Q++TI   
Sbjct: 231 DGGAAVISADHDCSAQVIDAARARGLRLITVGRNGDAGEGIRLIEASIDGFAQKLTIEHA 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+      PL GEFQ+ NALVAAGL I  G D A     L+ L   PGR +FVG   RG 
Sbjct: 291 GRRTAVHLPLVGEFQIENALVAAGLVIGAGGDPAAAFAALDHLEGAPGRLDFVG-ERRGA 349

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            ++VDYAH  ++L   L+ +R     +++VVFG GGDRD GKRP+MG IA   AD  IVT
Sbjct: 350 PVFVDYAHKPDALAKALQALRPYAKRKLVVVFGAGGDRDAGKRPLMGAIAAGNADSIIVT 409

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSEDP  IRA I+   PG  E G+R EAIRTAI  L   D L++AGKGHET  IV 
Sbjct: 410 DDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIRTAIAALAPGDALLIAGKGHETGQIVR 469

Query: 477 NGEKKMSVDCD 487
           +       D +
Sbjct: 470 D-TVLPFSDHE 479


>gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
 gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
          Length = 493

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 139/500 (27%), Positives = 213/500 (42%), Gaps = 31/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++                 Q  E +I  +  DSR  +   I+  + G   DGH F+
Sbjct: 8   MKLSEMF---------------EQAPEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
              IA+G +AIV +                  + V+N  + L+  AS  Y        + 
Sbjct: 53  EDVIAKGVKAIVHAKPIEHMH------KGVAYIQVENVNRTLNRIASLFYQHPSRYMKVF 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTGT+GKS++ S +Q +        +                LTTP PI + K+++ + 
Sbjct: 107 GVTGTNGKSTITSIIQDVYSHFHPCGYIGTIAIRYGDVELPPSLTTPDPILIHKSMADMR 166

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+   ++E SSHGL+  R+  +      F+NL  DH+D+H T + Y  AK +LF   L
Sbjct: 167 AAGMEACALEVSSHGLELGRVMSVDFDIAIFSNLTYDHLDFHGTIENYLEAKKKLFTN-L 225

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A++  DDAY +         G  V              +    +  Q T+    K
Sbjct: 226 KSDGVAVLNRDDAYYQAFAD--CTNGRLVTYGIKHDSDYRAMDIQIQTDGSQFTLLHHEK 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +     L   + +YN L A       GI    +L +L  +  + GR E +        +
Sbjct: 284 SYTIKTNLVAMYNIYNLLGAIAGMCEAGIAIEDMLPYLASIKQIEGRMERIDEGQL-FNV 342

Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VD+AHT + LE + +  + IT     II VFG  G RD  KR + G+IA    D  I+T
Sbjct: 343 IVDFAHTPDGLEKVFEYAKDITKEGHSIIAVFGSAGKRDTKKRKVFGEIASKYCDSIILT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +D+PR ED  +I  EI  GI     I   +R  AIR AIE     D +++ GKG E    
Sbjct: 403 EDDPRDEDAREIANEIKEGIKDTKNIFIEDRYNAIRQAIESAGAYDTVLILGKGDEVFMY 462

Query: 475 VTNGEKKMSVDCDIIREILG 494
              G +    D ++ RE + 
Sbjct: 463 REFGREPWLGDHNVARECIR 482


>gi|83748761|ref|ZP_00945776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|207744406|ref|YP_002260798.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724582|gb|EAP71745.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|206595811|emb|CAQ62738.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 514

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 156/482 (32%), Positives = 226/482 (46%), Gaps = 26/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V GN   + DG   IPQAI  GA A++         +     
Sbjct: 32  DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAE----AHGYVVPAD 87

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +   IL VD   +     A++ Y          + VTGT+GK+S + ++ Q   R G   
Sbjct: 88  APVRILPVDGLAELAGPLAAQWYAVPGPDALRAIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L+ L   G   V++E SSHGL+Q R DG +
Sbjct: 148 AVVGTLGTGFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGTR 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257
                FTNL +DH+DYH T   Y  AK RLF         + ++  A +        ++ 
Sbjct: 208 FDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLTGLRADIE 267

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +       +      ++    V A        +           P+ G F V N L 
Sbjct: 268 AVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSNQLG 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L+ + 
Sbjct: 328 VLGVLLMAGVPWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386

Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I   I  
Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDMIAD 446

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+      ++  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + +R 
Sbjct: 447 GMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505

Query: 492 IL 493
            L
Sbjct: 506 AL 507


>gi|207721509|ref|YP_002251949.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
 gi|206586669|emb|CAQ17255.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
          Length = 514

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 156/482 (32%), Positives = 227/482 (47%), Gaps = 26/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V GN   + DG   IPQAI  GA A++         +     
Sbjct: 32  DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAE----AHGYVVPAD 87

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +   IL VD   +     A++ Y         ++ VTGT+GK+S + ++ Q   R G   
Sbjct: 88  APVRILPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L+ L   G   V++E SSHGL+Q R DG +
Sbjct: 148 AVVGTLGTGFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVAMEVSSHGLEQGRADGTR 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257
                FTNL +DH+DYH T   Y  AK RLF         + ++  A +        ++ 
Sbjct: 208 FDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLTGLRADIE 267

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +       +      ++    V A        +           P+ G F V N L 
Sbjct: 268 AVEYGIDGEAAAQRGARHWLRATSVRAHRTGTTFDVDGSFGRATVHSPMVGLFNVSNQLG 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L+ + 
Sbjct: 328 VLGVLLMAGVPWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386

Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I   I  
Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDMIAD 446

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+      ++  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + +R 
Sbjct: 447 GMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505

Query: 492 IL 493
            L
Sbjct: 506 AL 507


>gi|116072268|ref|ZP_01469535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
 gi|116064790|gb|EAU70549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
          Length = 502

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 151/500 (30%), Positives = 229/500 (45%), Gaps = 17/500 (3%)

Query: 11  FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL+  + + P +     +I  V+SDSR    G +FV + G++ DG LF  QA+     
Sbjct: 5   LDELLRDVGLTPTVGGSNPQIESVTSDSRLAGPGSLFVGLPGDRVDGGLFWRQALN---A 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENI--LAVTGTSGK 126
               +              +  ++VV +     L   A+  + +  E +  L VTGT+GK
Sbjct: 62  GAAAAVIGPAAAAVDPPGDSDQVVVVADPLASTLGELAASFWSRPSERMALLGVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ +    G S+   G   +  S  +     TT     L   L+  +S G    
Sbjct: 122 TTTTYLIEHLALACGRSTALFGTLVNRWSGHSITATHTTAFADRLQAQLAEAASAGSLLA 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH L QHR+ G +     FTNL +DH+DYH + + YF AK  LF E L +  PA 
Sbjct: 182 AMEISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMEDYFEAKALLFSEALLQAGPAR 241

Query: 246 -IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            +   D      +     A C   S+      + ++ +C   +     +     +  F  
Sbjct: 242 AVVNGDDPWGAKLAERLGAQCWRSSLTDPTAELRMEDLCMTSHGVSGRLISPLGEGAFQS 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF----VGTNSRGGRIYV 360
           PL G F + N L A G+ +   +    +L  +     VPGR E         +    + V
Sbjct: 302 PLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAITTTLPTVLV 361

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE  L   R    G++I VFGCGGDRD+GKRP M  IA  LAD  +VT DNP
Sbjct: 362 DYAHTPDGLENALAAARPFAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNP 421

Query: 421 RSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R+EDP +I  +++ GIP     +   +R  AI   I   +  D+++VAGKGHE   I+  
Sbjct: 422 RTEDPLRILEDVVKGIPDGVDRVVDPDRGAAIAQTIAEADAADLVLVAGKGHEDYQILG- 480

Query: 478 GEKKMSVDCDIIREILGLIL 497
            EK    D +  ++ L   L
Sbjct: 481 IEKVHFDDREEAQKALRRRL 500


>gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 483

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 132/501 (26%), Positives = 218/501 (43%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++          ++  ++ DSR +  G IF+A  G + DG+ F 
Sbjct: 1   MDLKELLHGVQAKIYGKVRPL-------EVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+A GA AI  S              +   ++  N  +  +  +++ Y         +
Sbjct: 54  ADALANGAIAIASS--------LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++ +       S  +G    I       +  TTP+P  L K L+ +
Sbjct: 106 GVTGTNGKTTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q    V +E SS GL   R+          TN+  DH+D+H T +AY  AK +LF  +
Sbjct: 166 VRQNRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFEAYVAAKAKLFSLV 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P     I       S+ +          +              +    +  + T+    
Sbjct: 226 PPSGMVVINTDSPYASQCIESA---KAPVITYGIESAADYRATDIQLSSSGTKYTLVYGD 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +         G++ VYN L A     A    D   +LE +      PGR           
Sbjct: 283 QKIACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRL--DPVLMGPC 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +Y+DYAHT ++L+ +L  +  +    GR+IVVFGCGGDRD+ KR +M ++       A+
Sbjct: 341 PVYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQVVERYG-FAV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPRSE PE I  EI  G     +  + +R +AI  A+ + + +D++++AGKGHE  
Sbjct: 400 VTSDNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKGHEAY 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I  +       D   + E+L
Sbjct: 460 QIFKHQTVA-FDDKQTVCEVL 479


>gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 498

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 147/505 (29%), Positives = 231/505 (45%), Gaps = 28/505 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+      +  +            I+ +  DSR +  G +F+A+ G K+DG  FI Q
Sbjct: 6   LKYLLLPWIKNIPKKY-----------ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQ 54

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI + A AI+  +    +        N  ++      + +SL A+R Y +  +   I+ +
Sbjct: 55  AINKKAVAILCETKKKDKHGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V   + Q     G  +  +G        + Q    TT SPI++   LS +  
Sbjct: 115 TGTNGKTTVTQLINQWSTILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLE 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    V++E SSHGL QHR+  +      FTNL +DH+DYH+  + Y +AK  LF     
Sbjct: 175 KQAELVTMEVSSHGLIQHRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS--TH 232

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGC-------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           K    I+ ADD Y K  +K+  N          R                   +N   +T
Sbjct: 233 KVKKIILNADDQYGKIWLKKLLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYIT 292

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        L G F V N L++    + +G   + ++   EK+  V GR E     
Sbjct: 293 FESSWGTGRISSCLIGRFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYV 352

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +     +DYAHT ++L+  L  I +     I  +FGCGG+RDQ KRPIMG IA  ++D 
Sbjct: 353 KKPTF-IIDYAHTPDALKKTLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDK 411

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I+T+DNPR+E  +KI  +I++G       +   +R +AI  A        ++++AGKGH
Sbjct: 412 VIITNDNPRNEKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGH 471

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   I+ N       D  I+  +LG
Sbjct: 472 EEKQIIQNRSINY-SDKKIVLNLLG 495


>gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
 gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
          Length = 499

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 138/486 (28%), Positives = 223/486 (45%), Gaps = 29/486 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           ++WR++       DSR+IQ   +F+A+       K    +F   A+AQGA  I+      
Sbjct: 16  IEWRDQPFQGFCLDSRYIQKDQLFIALTSYSQPEKT--RIFAETALAQGALGIISEQPLG 73

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVASFVQ 134
           L+             V  + R  +  +      K    +   I+AVTGT+GK++++  V 
Sbjct: 74  LERE----------WVCADVRHRMGQWQKNYLQKTEPVNAARIIAVTGTNGKTTISRLVA 123

Query: 135 QICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           ++          +G T          +  TT   + L  AL     +G    S+EASSHG
Sbjct: 124 ELLTLQQQRCAVMGTTGNGILPHLNPSTHTTLDALQLQSALHQYVKEGARFASLEASSHG 183

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAY 252
           L+Q RL+G  +    ++NL RDH+DYH T  AY  AK RLF     K +      A    
Sbjct: 184 LEQGRLNGCDIEIAVYSNLSRDHLDYHGTLAAYAEAKSRLFAFKSLKVAVINQDDAYAEL 243

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            K V  +       +     Q     +K++    +  +  +     ++    PL G F V
Sbjct: 244 MKAVAAQNPAQPQILTYSLTQSADYSVKELQYSLSGARFILVGPKGEYLVESPLLGHFNV 303

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N + A       G     +++ + +L   PGR + +    +     VDYAHT ++L  +
Sbjct: 304 ENLIAALIAAEQAGFALEELVKTVPQLIGAPGRMQVIRD--QDRLFVVDYAHTPDALNQV 361

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           LK +R     ++  VFGCGGDRD+GKRP+M + AL+ A+  I+T DNPR+E+P++I A++
Sbjct: 362 LKTLRRHVQQQLWAVFGCGGDRDRGKRPLMTQAALNGANPVILTSDNPRTENPKQIFADM 421

Query: 433 IHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             GI        E  +R EAI+  ++     D++V+AGKGHE    +  G +    D   
Sbjct: 422 KTGIDFSHHQIYEIHDRREAIKYVVQHAQAGDIVVIAGKGHENYQEIQ-GVRHWFDDVTE 480

Query: 489 IREILG 494
           ++  + 
Sbjct: 481 VQSAIN 486


>gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 516

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 227/501 (45%), Gaps = 20/501 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +     ++   L+       +  +  V+  ++ ++ G +F A+ G+   G  +  +AI +
Sbjct: 15  LPALAAQVGAVLADRAAAVPDVAVTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIER 74

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++  +A   +  ++      P LV    R  L   A+ +YG   E    + +TGTS
Sbjct: 75  GAVAVLTDAAGVAEMGASASA--VPTLVHPAPRGVLGALAATVYGNPSERTTVIGITGTS 132

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G ++  IG        A   + LTTP    L    + ++ +GV 
Sbjct: 133 GKTTTTYLVEAGLRAAGRTAGLIGTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVD 192

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG     G+FTNL RDH+D+H T   YF AK +LF+   P  + 
Sbjct: 193 TVVMEVSSHALALGRVDGTGFAVGAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRAR 252

Query: 244 AIIYADDA---YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTISVEGK 298
            ++   D     +  +      A    +S   Q        V       +Q   I   G 
Sbjct: 253 RVVVCVDDEAGRAMAMRAMQGGAAAITVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGV 312

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  LPG + V N LVA  +  A+G+        L     VPGR E +         
Sbjct: 313 RHRVGIRLPGHYNVANCLVALAILDAVGVSPEQAAPGLLD-TRVPGRMEEIDCGQ-DFLA 370

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   +L  +L ++      R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDD
Sbjct: 371 LVDYAHKPGALRAVLTSLAR-PGRRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDD 429

Query: 419 NPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           NPR EDP  IR EI+       G    +E G+R  AI  A+      DV++VAGKGHET 
Sbjct: 430 NPRGEDPAAIRREILAGAAAGGGAAEVVEIGDRRAAIEHAVAWARPGDVVLVAGKGHETG 489

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
                GE +   D   + + L
Sbjct: 490 Q-RAAGEVRPFDDRLELADAL 509


>gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
 gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
          Length = 505

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 155/509 (30%), Positives = 231/509 (45%), Gaps = 32/509 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+   F EL    +I         +  V  DSR    G +FVA+ G   DGH ++  
Sbjct: 4   LHDLLSDLFAELRGDDAIM--------VTRVVYDSRQATPGSLFVALRGTHTDGHCYLAD 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A ++GA A VV      +  S  +     I  V +TR  L+  A+R YG    ++  + V
Sbjct: 56  AASRGAVAAVVE-----EWPSQDVPGLRTIARVSDTRVALAAIAARFYGHPASDLGLIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++    +  I + +G  +  IG  +        A D R TTP  + +   L+ +
Sbjct: 111 TGTDGKTTTTFLIDAILRTAGYRTGLIGTVALRIGDEFVAHDLRQTTPESLDVQAFLARM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + GV    VEA+SHGL+ HRLD         TN+ ++H+D+H T + Y  AK RL E +
Sbjct: 171 RATGVAWAVVEATSHGLELHRLDHCPFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLEFV 230

Query: 238 LPKESPAIIY----ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   A         D      + R   +   +         +  +            +
Sbjct: 231 RDRPERAYPRGIVLNADDEGARSLARFAGSVPILWYSATGKAVLVAENARMTDKGTSFRL 290

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  D    L G + V NAL AAG  I +GI    V+  L++L  VPGRF  +    
Sbjct: 291 RYGDQAADVHLRLFGLWNVENALAAAGTGILLGIPLDQVVTGLQQLAAVPGRFTPIDCGQ 350

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              R+ VDYAHT  S E +L   R++  GR+IVVFG  G+RD+ KR + G IA  LA+ A
Sbjct: 351 -PFRVIVDYAHTPKSFERVLPLARSLARGRVIVVFGSAGERDRIKRRLQGAIAARLAEFA 409

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + T ++PR EDP+ I AEI  G           F+   +R  AIR A       D++++ 
Sbjct: 410 VFTSEDPRHEDPDAIIAEIAEGAREAGAQEGQQFVCVEDRALAIREAFRRARPGDIVLLL 469

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKGHE   +  +  +    +    R+ L 
Sbjct: 470 GKGHEQCILYGDERRPW-NEEAEARQALR 497


>gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
 gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
          Length = 500

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 140/497 (28%), Positives = 242/497 (48%), Gaps = 16/497 (3%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K    L   +    ++     I ++  +S +++   IF+A  G++ DGH FI  A  +G
Sbjct: 6   NKLLQFLNGNIKKKVIKNEILNIADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A  I+      +         +   ++V++ +K  +  + +L+   P+   IL VTGT+G
Sbjct: 66  ASLIIAQDEEKIP-----TNDSLQYIIVEDIKKAAADLSHKLFDISPDDFKILGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           KS+  S V  I Q+S   S  I            ++   TTPS + L+K L       + 
Sbjct: 121 KSTTVSLVHHILQKSDKDSTLISTVEIKIKDEVVKEPYNTTPSILELSKILKNSKENNIE 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +++E SSH + Q R++G+K    SFTN+ RDH+DYH+  + Y + K+ L   L  +   
Sbjct: 181 FINMEVSSHAIHQRRIEGVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMNYLKDEGKI 240

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I          V                     + + +  +    +     E K ++  
Sbjct: 241 VINLDRLNKDDFVKSGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTK---EHKSYEIR 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDY 362
             L G+F VYN   A  +    G++   ++  +     V GRF+ V G+ S G    +D+
Sbjct: 298 SHLIGKFNVYNITNAFVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFFAVIDF 357

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++L  +LK   +IT GRII VFG GG+ D+GKR +MG++  + +D+ ++T+D+P+ 
Sbjct: 358 AHTPDALNEVLKTASSITEGRIITVFGAGGNADKGKRKLMGQVVSEHSDVIVLTNDDPKD 417

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP++I  ++  GI     FI   +R  AI TA+   NK D++++AG+GHE   +  NG+
Sbjct: 418 EDPDQIIEDVSKGIDQDKHFIVIPDRETAIDTALRFANKGDIVIIAGRGHEKYQLFANGK 477

Query: 480 KKMSVDCDIIREILGLI 496
           K    D ++ ++++  I
Sbjct: 478 KVKFNDYEVTKKLIDKI 494


>gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
 gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
          Length = 487

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 152/492 (30%), Positives = 225/492 (45%), Gaps = 34/492 (6%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI----------AQG 67
             +F    R+  I E++ DSR ++ G +F+A+ G K DG   I  A+           QG
Sbjct: 6   SKLFAHASRDPLIRELTLDSRAVRPGDLFLAVPGAKVDGRAHIADALARGAAAVAYEEQG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
           A                   +  P++ V      LS  A R YG+    +  + VTGT+G
Sbjct: 66  ASV--------------LPITEVPLIPVKGLIGQLSQIAGRFYGEPSRQLELVGVTGTNG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SV   + Q     G     IG   T      Q  RLTTP PI +   L+ L   G   
Sbjct: 112 KTSVTQLLAQALDALGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKA 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH L+Q R+  +       TNL RDH+DYH +  AY  AK +LF     +    
Sbjct: 172 VAMEVSSHALEQGRVAALDFDIAVMTNLSRDHLDYHGSMGAYEAAKAKLFAWSSLRARVV 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            +  DD + + + +    +     S+      +  K+     +  +  I     +     
Sbjct: 232 NL--DDDFGRRLAEAHGQSRLISYSLQDPAATLFCKQAAFNDDGVRAVIVTPQGEHALRS 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G F + N L A    +A+      +L+   +LH   GR + +G   +   + VDYAH
Sbjct: 290 RLLGRFNLSNMLAAVATLLALDYPLDEILKVTPQLHGPIGRMQRLGGGDKPL-VVVDYAH 348

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE +L+ +R    G+++ +FGCGGDRD GKRP+M  +A  LAD  +VTDDNPR+ED
Sbjct: 349 TPDALEKVLEALRPHAHGKLLCLFGCGGDRDSGKRPLMAAVAERLADRVLVTDDNPRTED 408

Query: 425 PEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P +I  +I  G     +      R EAI   I      DV+V+AGKGHE    + NGE+ 
Sbjct: 409 PLRIFDDIRPGFAKPADIEFVAGRGEAIAHLIATAAADDVIVLAGKGHEDYQEI-NGERH 467

Query: 482 MSVDCDIIREIL 493
              D     + L
Sbjct: 468 DFSDLVEAEKAL 479


>gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 498

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 147/505 (29%), Positives = 231/505 (45%), Gaps = 28/505 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+      +  +            I+ +  DSR +  G +F+A+ G K+DG  FI Q
Sbjct: 6   LKYLLLPWIKNIPKKY-----------ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQ 54

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI + A AI+  +    +        N  ++      + +SL A+R Y +  +   I+ +
Sbjct: 55  AINKKAAAILCETKKKDKHGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V   + Q     G  +  +G        + Q    TT SPI++   LS +  
Sbjct: 115 TGTNGKTTVTQLINQWSTILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLE 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    V++E SSHGL QHR+  +      FTNL +DH+DYH+  + Y +AK  LF     
Sbjct: 175 KQAELVTMEVSSHGLIQHRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS--TH 232

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGC-------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           K    I+ ADD Y K  +K+  N          R                   +N   +T
Sbjct: 233 KVKKIILNADDQYGKIWLKKLLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYIT 292

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        L G F V N L++    + +G   + ++   EK+  V GR E     
Sbjct: 293 FESSWGTGRISSCLIGHFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYV 352

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +     +DYAHT ++L+  L  I +     I  +FGCGG+RDQ KRPIMG IA  ++D 
Sbjct: 353 KKPTF-IIDYAHTPDALKKTLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDK 411

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I+T+DNPR+E  +KI  +I++G       +   +R +AI  A        ++++AGKGH
Sbjct: 412 VIITNDNPRNEKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGH 471

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   I+ N       D  I+  +LG
Sbjct: 472 EEKQIIQNRSINY-SDKKIVLNLLG 495


>gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
 gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
          Length = 458

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 142/464 (30%), Positives = 227/464 (48%), Gaps = 23/464 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR ++ G  F+AI     DGH +I QAIA GA  I+        +           ++
Sbjct: 7   TDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGATKIIAEHGSYKVET----------II 56

Query: 95  VDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           V++TR++L   L+ +         ++ +TGT+GK++      QI +    +   +G    
Sbjct: 57  VESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGF 116

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 +    TTP    L   L      GV +  +E SSH LD+ R+ G++    +FTN
Sbjct: 117 YYGDVKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFDEVAFTN 176

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH+T + Y NAK  LF +    +  AII  DD + +  +  ++N        G
Sbjct: 177 LTQDHLDYHKTLENYANAKRILFTK-TRNDKIAIINGDDEHYQHFVLESNNNIII----G 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                + + ++   H            ++     + G + +YN L+A  L   +G+    
Sbjct: 232 QHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIED 291

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L   +KL    GR E +   +    I+VDYAHT +++  +LK+     +GRII + GCG
Sbjct: 292 ILALNDKLKAPAGRMELLKYGTNS--IFVDYAHTPDAVINVLKSAEEFKNGRIITIIGCG 349

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAI 449
           GDRD  KRPIMGK AL+ +D  I T DNPRSEDP+ I  +I +G+    F  + +R +AI
Sbjct: 350 GDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEIEVDRQKAI 409

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              ++ L   D+L++ GKGHE   I   G K    D + + + +
Sbjct: 410 IKGMQQLKHNDILMILGKGHEDYQITKTG-KHHFSDQEEVMKYI 452


>gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 498

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 147/505 (29%), Positives = 231/505 (45%), Gaps = 28/505 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+      +  +            I+ +  DSR +  G +F+A+ G K+DG  FI Q
Sbjct: 6   LKYLLLPWIKNIPKKY-----------ISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQ 54

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI + A AI+  +    +        N  ++      + +SL A+R Y +  +   I+ +
Sbjct: 55  AINKKAAAILCETKKKDKHGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++V   + Q     G  +  +G        + Q    TT SPI++   LS +  
Sbjct: 115 TGTNGKTTVTQLINQWSTILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLE 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    V++E SSHGL QHR+  +      FTNL +DH+DYH+  + Y +AK  LF     
Sbjct: 175 KQAELVTMEVSSHGLIQHRVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFS--TH 232

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGC-------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           K    I+ ADD Y K  +K+  N          R                   +N   +T
Sbjct: 233 KVKKIILNADDQYGKIWLKKLLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYIT 292

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        L G F V N L++    + +G   + ++   EK+  V GR E     
Sbjct: 293 FESSWGTGRISSCLIGRFNVTNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYV 352

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +     +DYAHT ++L+  L  I +     I  +FGCGG+RDQ KRPIMG IA  ++D 
Sbjct: 353 KKPTF-IIDYAHTPDALKKTLNAIHSHYQRYIWCIFGCGGERDQKKRPIMGAIAEKMSDK 411

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I+T+DNPR+E  +KI  +I++G       +   +R +AI  A        ++++AGKGH
Sbjct: 412 VIITNDNPRNEKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKGH 471

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E   I+ N       D  I+  +LG
Sbjct: 472 EEKQIIQNRSINY-SDKKIVLNLLG 495


>gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
 gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
          Length = 486

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 145/496 (29%), Positives = 238/496 (47%), Gaps = 24/496 (4%)

Query: 9   KDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   ELI    +  ++   + +++ ++ DSR I  G  F A+ G + DGH +I       
Sbjct: 2   KQIQELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDA----- 56

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
                 ++A   Q     +  +   +VV +T   ++  A+  YG       ++ +TGT+G
Sbjct: 57  -AVTAGAAAVVCQRLPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  + +  + +  G     I      I +   ++  TTP  I L + ++ +   G  +
Sbjct: 116 KTTTVTLLYDLFRGLGYKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAGCEY 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH + Q R+ G+    G F+N+  DH+DYH+T   Y  AK  LF + LPKE+ A
Sbjct: 176 CFMEVSSHAIVQERIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAKK-LFFDNLPKEAFA 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I  DD   + +++        +           +       +   + + ++G++     
Sbjct: 235 LINIDDRNGRVMVQNTRATVKTLSLQSMADFRCKI----LETHPDGMELRIDGREVWVH- 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G F  YN L      + +G D   VL+ +  LH V GRFEFV     G    VDYAH
Sbjct: 290 -FLGRFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRAAD-GTTAIVDYAH 347

Query: 365 TSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           T ++LE +L+ +  I     ++ V+ GCGGDRD+ KRP M +IA+  A  AI+T DNPR 
Sbjct: 348 TPDALEKVLQTVEEIRRPGQQLFVLCGCGGDRDKTKRPEMAQIAVKYATTAILTSDNPRH 407

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           EDP+ I  +++ G+     ++   +R EAIRTA  +    D+L++AGKGHET  IV +  
Sbjct: 408 EDPDAILDDMVAGLAPGDRYLRIADRAEAIRTAAMLAKPGDILLLAGKGHETYQIVGD-V 466

Query: 480 KKMSVDCDIIREILGL 495
           K    D +       L
Sbjct: 467 KNHFDDKEEALRAFAL 482


>gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 514

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 130/478 (27%), Positives = 218/478 (45%), Gaps = 22/478 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V+  S  +Q G ++V + G +  G  F   A A GA A++          +    S  
Sbjct: 40  TGVTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDPDG----LAEARDSGL 95

Query: 91  PILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++  + R  L   A+ ++   ++P  +  VTGT+GK+SV   +  + ++ G+ +    
Sbjct: 96  PVILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTS 155

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                    +  +RLTTP    L   L+ +    V  V++E S+  L +HR+DG+     
Sbjct: 156 TAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDVA 215

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +F NL  DH+D +   + YF AK   F+    +     +     + + +++++      +
Sbjct: 216 AFINLSHDHLDDYADFEEYFEAKAAFFDPDRARRGVVSLDTV--WGQRIVEQSRIPMTTI 273

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
            +         +  +    +     +            P+PG F   NA +A  + +  G
Sbjct: 274 SAQPGIEADWRVTVLEQTPDSTGFRLEGPDNRVLVSSVPVPGWFMAANAGLAIVMLVESG 333

Query: 327 IDSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            D   V   L++       +PGR E V +   G   +VDY HT ++ E  L+ +R  T G
Sbjct: 334 YDLDAVAHVLDRDGGIQAYIPGRAERV-SGDTGPLFFVDYGHTPDAFEQTLQALRPFTPG 392

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-- 440
           ++++VFG  GDRD  KR  MG IA  LAD+ ++TD +PR EDP  IRA +I G    +  
Sbjct: 393 KLVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRASLIAGARAAVPD 452

Query: 441 ----EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               E  +   AIRTA+ ++ + D ++VAG GHE  H V  G+K      D  R  L 
Sbjct: 453 REIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVA-GKKIPFSARDDARAALR 509


>gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
 gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
          Length = 491

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 195/482 (40%), Positives = 268/482 (55%), Gaps = 9/482 (1%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++       ++ L++     R+  I  +++DSR I  G +F A+ G + DG  FI 
Sbjct: 3   KLSDIMASRTEIAVSALALE----RDPPITALTADSRKIVPGTLFAALPGTRHDGRDFIA 58

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA+     A   +              +  ++   N R+ L+L A+  YG  P+ I AVT
Sbjct: 59  QAV----AAGASAVLAPKGTVLPPGCEHVALIEDLNPRRRLALLAAAFYGAQPQRIAAVT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQ 180
           GT+GK+S A F +QI    G  S  +G    ++    +   LTTP P+ L + L+ L+  
Sbjct: 115 GTNGKTSTAQFTRQIWSGLGHRSGAMGTLGLVADGFPNIETLTTPDPVELHRLLAELARG 174

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GVTH+++EASSHGLDQ RLDG+ +    FTNL RDH+DYH+T +AYF AK  LFE ++P+
Sbjct: 175 GVTHLAMEASSHGLDQFRLDGVLVTCAGFTNLTRDHLDYHRTMEAYFQAKATLFERVMPQ 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            + A++ AD    + +     +    V+  G +G+ + L     + + QQV I V G   
Sbjct: 235 GAVAVLNADTPQFEALAALCRSRKQTVIGYGERGRELALHSARPLPHGQQVEIEVFGTRH 294

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G FQ++NAL A GL I  G D A     L +L  V GR + V     G  +YV
Sbjct: 295 SLELPLVGNFQLWNALCALGLVIGSGEDPAAATAQLARLEGVRGRLDLVARLKNGAAVYV 354

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE +LK +R  T GR++ VFG GGDRD GKRP+MG++   LAD AIVTDDNP
Sbjct: 355 DYAHTPDGLETVLKALRPHTVGRLVAVFGAGGDRDPGKRPLMGEVVARLADRAIVTDDNP 414

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           RSE P  IRA I+   P   E G+R EAI  AI  L + DVLVV GKGHE   IV    +
Sbjct: 415 RSEVPAVIRAAILAACPDATEIGDRAEAIEAAIAGLEQGDVLVVCGKGHEQGQIVGTEVR 474

Query: 481 KM 482
             
Sbjct: 475 PF 476


>gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 483

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 137/501 (27%), Positives = 240/501 (47%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR +  G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLRNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+A GA A++ S              +   ++ ++     +  A+R Y    ++  ++
Sbjct: 54  SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSKHLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+++ +RSG+ +  IG    I       +  TTP  I L K  + +
Sbjct: 106 GITGTNGKTTVSCLVRELMERSGIRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   +E SS G+   R+   + +AG  TN+  DH+D+H + + Y  AK + F   
Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP++  A++  D  Y+   +  +                    ++    +     I  +G
Sbjct: 225 LPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADY--RADRLKLYSSGSSYDIWYQG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K F     L GE  VYN L +  +     G D A ++  +  L    GR           
Sbjct: 283 KVFPCETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRL--DPILLGPF 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +Y+DYAHT ++L+ + + +  +    GR+I+VFGCGGDRD+ KRP+M K++      + 
Sbjct: 341 PVYIDYAHTPDALDNVCRILLQLLPKYGRLIIVFGCGGDRDRVKRPLMAKVSEHYG-FSF 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE  
Sbjct: 400 VTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGY 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I  +       D +++ E L
Sbjct: 460 QIFKHQTIV-FDDREVVCEAL 479


>gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
 gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
          Length = 530

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 132/483 (27%), Positives = 215/483 (44%), Gaps = 24/483 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN-- 89
           ++ +DSR I  G IF AI+G+ +DG  +I QAI QGA+ +V       +    T  S+  
Sbjct: 32  DLHNDSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHGDVTFASSDN 91

Query: 90  -TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I+      + L       Y    +N+  + +TGT+GK++ +  + Q+      +   
Sbjct: 92  TVAIVKFYQLNQHLFTLTKNYYQAPQDNMTLVGITGTNGKTTTSQLLAQMLSAYQKTCAV 151

Query: 147 IGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG     S         TTP    L +     S +  ++V++E SSH L Q+R+      
Sbjct: 152 IGTNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQADLFD 211

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK---EVMKRAHN 262
              FTNL RDH+DYH +  +Y  +K ++F     + +        A         ++   
Sbjct: 212 IAIFTNLSRDHLDYHGSMASYGESKKQIFSADSNQVAVVNFDDQQAKKWLENWPKQQTLW 271

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              R         F+  K +    +    T+     D D   PL G+F + N L A  + 
Sbjct: 272 LYSRETDNSNYKNFVTAKGINHHRHGVSFTLMSHLGDIDITSPLLGDFNIDNLLAAISVL 331

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +  GI  + +   + ++  + GR E     +      VDYAHT ++LE  L+  R   +G
Sbjct: 332 LIQGIPLSEIPHLVTQVSAIAGRMEATSAKNL-ATAVVDYAHTPDALEKALQACRQHCAG 390

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----P 437
            + VVFGCGGDRD+GKRP+M + A   AD  +VT+DNPRSED + I  +I+ G       
Sbjct: 391 ELYVVFGCGGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQLIANDIVAGFTCPDAE 450

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI---------VTNGEKKMSVDCDI 488
                  R +A+   +      D++++AGKGHE   I         +   +K    +  +
Sbjct: 451 QISIILEREQAVLKTLNKAKPGDIVLLAGKGHEDYVIVAKHDEKGGIVGTQKLAYNERLV 510

Query: 489 IRE 491
           ++ 
Sbjct: 511 VKN 513


>gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 573

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 144/496 (29%), Positives = 230/496 (46%), Gaps = 22/496 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  +L   P +  +  +  ++ DSR ++ G ++ A+ G +  G  F  QA + GA A
Sbjct: 66  LGELAARLGAAPQESGD--VTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAVA 123

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   A + +       +  P+LV ++ R  +   A+ +YG+   +   + +TGTSGK++
Sbjct: 124 VLTDPAGAER----AAATGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTT 179

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G S+  IG            +  TTP    L    + +  +GV  V++
Sbjct: 180 TAYLVEGGLRGAGRSTGLIGTVEMRIGDDRIKSERTTPEATDLQALFAVMRERGVEAVAM 239

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +       
Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPRRSRLGVVNF- 298

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306
            DD Y + ++  A        + G+         V       + T+     +      PL
Sbjct: 299 -DDEYGRRLIDEASVPVVTFSAEGHPDADWRAADVEVGPQDSRFTVLGPKGERITARAPL 357

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       G+D     + +  +  VPGR E V          VDYAH +
Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKT 416

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDVTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476

Query: 427 KIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I A ++ G       E+G+         AI  A+      D ++VAGKGHE    + +G
Sbjct: 477 AILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDI-HG 535

Query: 479 EKKMSVDCDIIREILG 494
             +   D  ++RE + 
Sbjct: 536 VVRPFDDRQVLREAIE 551


>gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
 gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
          Length = 480

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 192/495 (38%), Positives = 269/495 (54%), Gaps = 16/495 (3%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  LI +   +L    S+      +  ++  + D+R +  G +F A  G + +G  FI
Sbjct: 1   MRLGSLIEEQDAKLGAGASL------DVPVSGFAIDNRKVAPGTVFGAFQGARMNGEDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+         + A ++             +  DN R+  +  A+R +   PE  +AV
Sbjct: 55  PAAVQ--------AGAVAVVARPEARVEGAIHIAHDNPRRLFAQLAARYFAPFPEMTVAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ +  G  S  IG    T S       LTTP  +     +S L  
Sbjct: 107 TGTNGKTSTVELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLSNMSGLKR 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G+TH + EASSHGL Q+R +G+ + A +FTNL RDH+DYH    +YF AKMRLF+ ++ 
Sbjct: 167 EGITHAAFEASSHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDGVVA 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+++ADD +S +V++RA   G RVLSVG QG+ + L         Q + + VEGK 
Sbjct: 227 PDGAAVVWADDEWSDKVIRRATKRGLRVLSVGVQGQALRLANRTPTQLGQTLEVEVEGKP 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    PL G +Q  NAL AA L IA G D   VLE L ++  V GR E       G  +Y
Sbjct: 287 YKVSLPLIGAYQAANALTAAALVIAGGEDVGKVLELLGRVQPVRGRLERAVITRAGAPVY 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + L   ++ +R  T GR+I +FG GGDRD GKRP MGK+A DLAD  IVTDDN
Sbjct: 347 VDYAHTPDGLRAAIEALRPHTKGRLITLFGAGGDRDAGKRPQMGKVAADLADHVIVTDDN 406

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PRSE+P  IRA ++ G PG  E G R  AI  AI      D++++AGKGHE   I+ +  
Sbjct: 407 PRSEEPSSIRAAVMAGAPGAEEIGGRRAAIAAAIAQAGADDIVLLAGKGHEQGQIIGD-R 465

Query: 480 KKMSVDCDIIREILG 494
                D  + RE  G
Sbjct: 466 VLPFDDVTVARECAG 480


>gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
 gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
          Length = 522

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 236/513 (46%), Gaps = 34/513 (6%)

Query: 8   YKDFPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
            +  PELI  L I   +     +  +  ++ + R  Q G+IFVA  G + DGH FIP AI
Sbjct: 6   RRTLPELIRHLPIQVFWEGTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTFIPHAI 65

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
            +G  A+V                + P L V N+R+ L+  ++  Y      +  + VTG
Sbjct: 66  ERGIVAVV--------GMQEISGLSIPYLRVSNSREALAYLSAAFYNFPAHEMTVIGVTG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSS 179
           T GK++ ++ + QI   +G S+  +   + +           +TTP    + + LS + +
Sbjct: 118 TDGKTTTSNLIYQILLAAGHSAGIVSTVNAVIGDEVVDTGFHVTTPEAPEVQRYLSRMRA 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--- 236
            G+THV +EA+SHGL+QHR+ G +   G  TN+  +H+DYH + +AY  AK RLF     
Sbjct: 178 AGLTHVVLEATSHGLEQHRVTGCEFDVGVVTNITHEHLDYHGSYEAYRAAKGRLFTMLSE 237

Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +   D  S E ++           +   G  +  + +    ++ +  I
Sbjct: 238 TPEKPHGNPRLAVLNRDDQSYEYLQSLVRVPAVSYGLAE-GADLRAENIRYEADRLRFDI 296

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                       L GE+ V N L A A   + +GIDS    + +  +  VPGR E +   
Sbjct: 297 VGRDFRQPVETCLVGEYNVSNCLAAFAATVLGLGIDSQHAAQGIANMSGVPGRMERIHMG 356

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                  VD+AHT N+L+  L   R IT GR+I VFG  G RD+ KR +M +++  LADI
Sbjct: 357 QS-FHAIVDFAHTPNALKQALLTARQITRGRVIAVFGSAGLRDREKRRLMAEVSAQLADI 415

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +I T ++PR+E  E I  E+  G           F    +R +AIR A++M    D+++ 
Sbjct: 416 SIFTAEDPRTESLEGILEEMARGAESQGAVRGKQFYLVPDRGDAIRMAVQMAKPDDLVIA 475

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
            GKGHE         +    D   +R  L  +L
Sbjct: 476 CGKGHEQSMCFGE-TEYPWDDRVAMRAALAELL 507


>gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
 gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
          Length = 506

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 159/494 (32%), Positives = 238/494 (48%), Gaps = 15/494 (3%)

Query: 11  FPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL +      +   ER ++  V+  ++ ++ G +FVA+ G +  G  FI  A  +GA 
Sbjct: 15  ISELADVAGAVVLAGDERGRVRGVAQAAQSVEPGDLFVALPGARTHGANFISVAQERGAA 74

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           A++   A +         +   +LV    R  L    + +YG       ++ VTGT+GK+
Sbjct: 75  AVLTDEAGAACLGGTDAMA---VLVAAAPRASLGALCALVYGDPSARLTVVGVTGTAGKT 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    ++ + + +G ++  IG   T   S +  +  TTP        L+ ++  GV  V 
Sbjct: 132 TTTYLLESLFRAAGRATGVIGTVETRIGSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVL 191

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LD  R+DG +  AG FTNL  DH+D+H   ++YF AK +LF+      +   +
Sbjct: 192 MEVSSHALDFGRVDGTRFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQPGSSVAARRAV 251

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFP 305
              D    + M R       V +      +  L++       QQV +    +  F F   
Sbjct: 252 ICVDDSWGQRMSRVARGSVTVATGDEAADWAVLERREDELGAQQVLVRGPRERQFAFRLG 311

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     NA++A GL  A G+     L        VPGR E V          VDYAH 
Sbjct: 312 LLGRHNAANAVLAVGLAEATGVRVTEELVRGWADIAVPGRLERVQAGQ-DFLAVVDYAHK 370

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             SL  +L+ +R  T+GRI VV G GGDRDQGKRP+MG+++   A++ +VTDDNPRSEDP
Sbjct: 371 PESLAKVLQALREHTAGRIAVVVGAGGDRDQGKRPMMGEVSASGAELVVVTDDNPRSEDP 430

Query: 426 EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
             IRA+++ G  G       E  +R EAI  A+      D ++VAGKGHET   V NG K
Sbjct: 431 AAIRAQVLAGAQGSSRAEVWEVASRAEAIARAVRWARAGDTVLVAGKGHETYQEV-NGVK 489

Query: 481 KMSVDCDIIREILG 494
               D +I+   + 
Sbjct: 490 SHFDDREILARAIR 503


>gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
 gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
          Length = 520

 Score =  282 bits (722), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 140/492 (28%), Positives = 223/492 (45%), Gaps = 32/492 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  +++DSR ++ G  F+A  G + D    IPQAIA G  A++       Q FS    
Sbjct: 23  VKIQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVIWEK----QGFSWKPE 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P L +   R      AS++Y        ++ +TGT+GK++ + +  Q     G  + 
Sbjct: 79  WKIPNLGISGLRHEAGKIASQVYDHPSRHLRLVGITGTNGKTTCSHWYAQTMMTLGEKTA 138

Query: 146 QIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG        A ++   TTP  +YL + ++     G   + +EASSHGL Q RL G + 
Sbjct: 139 IIGTLGHGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEASSHGLSQDRLAGSEF 198

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI---------IYADDAYSKE 255
                TNL RDH+DYH +  AY  AK +LF     + +                      
Sbjct: 199 SIAVLTNLTRDHLDYHGSMDAYAAAKAKLFFWEGLQHAVLNLDEVLGVELSQQLAWKDVS 258

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++                 K ++   +          +    +       + G +  YN 
Sbjct: 259 IIGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNRRASLQCNVTGRYNAYNL 318

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L      +A  +D    +  L+++  +PGR E +G   +   + VDYAHT ++L  +L  
Sbjct: 319 LAVLATLLASNVDLDDAITALQQVQPIPGRMEKLGGGDQPI-VIVDYAHTPDALNEVLTG 377

Query: 376 IRTITSG------------RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           +R   +G            +++ V GCGGDRD+GKRP++G+IA  LAD  I+T DNPR+E
Sbjct: 378 LRETLAGTRMKKRIRKNQAKLVCVIGCGGDRDRGKRPLIGEIASHLADEVIITSDNPRNE 437

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +P  I  EI+ G        + +R  AI  AI    K D++++AGKG ET   +  G+K 
Sbjct: 438 NPADIINEIMLGASGKHCTAEADRTAAIYRAIHGARKGDIVLIAGKGAETHQEIQ-GKKY 496

Query: 482 MSVDCDIIREIL 493
              D +++R++L
Sbjct: 497 PFDDREVVRQVL 508


>gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
 gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
          Length = 491

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 131/500 (26%), Positives = 227/500 (45%), Gaps = 28/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+++++     + +N + +        + + +SS+S+ I+   +F+   G   D H  +
Sbjct: 1   MKIKEIL-----KALNSVILKVNCDENMEFDYISSNSKDIKENTLFICRKGFNFDSHKIV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 GA                    + P ++V ++R   S+ A   + K  E ++  
Sbjct: 56  DDVARNGA----------EIFIVEEEIEDYPYILVVDSRIAESIIADVFFQKPYEKLITF 105

Query: 121 --TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
             TGT+GK++       I  + G+     G   + I      +  TTPS I + K +   
Sbjct: 106 GVTGTNGKTTSVHLFHHIMHQFGIKGSISGTVLNDIMGDKFYHHNTTPSAIEITKNMFKT 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   + ++E SSH L Q+R++ I+      TN+ RDH+D+HQT + Y  AK+ +   L
Sbjct: 166 VIEDGKYYAMEVSSHALSQYRVESIRYDIVGITNITRDHLDFHQTFENYKRAKLHILNLL 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P     + +        +          V           + ++ +  +     +    
Sbjct: 226 KPNGIAIVNHEL------IHDIPKKNIRVVTFGTDNNSDYVIHEIISNWSGIFFKLKTPF 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GG 356
            +   +  L G+F  +N  +     + IG D   V+  +     V GR E +    + G 
Sbjct: 280 GEKKVVSQLLGDFNAFNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLGI 339

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +D+AHT ++LE  + +IR +T GRII VFG GG  D GKRP+MG+IA   +DI I+T
Sbjct: 340 EIVIDFAHTPDALEKAILSIRKLTKGRIITVFGAGGQSDVGKRPMMGEIASKYSDICIIT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            D+PR EDP KI  +I  G+      +   +R EAI TAI + N+ D++++AG+GHE   
Sbjct: 400 TDDPRGEDPVKIIKDIEEGVVSGSLSLSIIDRREAIDTAITLANRGDIILIAGRGHEPYQ 459

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           +     K    D D+  +I+
Sbjct: 460 VFDENYKVPFKDRDVAIDII 479


>gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
 gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
          Length = 515

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 158/499 (31%), Positives = 240/499 (48%), Gaps = 21/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL++  +  P    +  +  ++ DSR +  G ++VA+ G +  G  F  QA A GA A
Sbjct: 15  LVELLSAQADGP-GLAKVAVTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAAAAGAVA 73

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           I    A   +       +  P+LV D+ R  L   AS +YG    ++  + VTGTSGK++
Sbjct: 74  IWTDPAGRHR----AAATGLPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGKTT 129

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               ++   + +G+ +  IG            + LTTP    L    + +   GV   ++
Sbjct: 130 TVYLLEAGLRAAGVDTAVIGTVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAAAM 189

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L Q R+ G       FTNL +DH+DYH T   YF AK +LF     +       
Sbjct: 190 EVSSHALAQGRVGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVGVVN-- 247

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306
            DD Y +E+ + A        + G        + V    +     +   G  + D    L
Sbjct: 248 VDDGYGRELTRIAQVPLTTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEADVSIQL 307

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V NAL A    +  G+   +    +  L  VPGR E +    +     VDY+H  
Sbjct: 308 PGPFNVANALAAIVALVEAGLPLQVAAAGVGTLTGVPGRLEPI-DEGQDFTALVDYSHKP 366

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            ++E +L ++R +T+GR+IVV GCGGDRD+GKRP+MG+ A  LAD+A++TDDNPRSEDP 
Sbjct: 367 GAVEAVLTSLREVTAGRLIVVLGCGGDRDRGKRPLMGETAARLADVAVLTDDNPRSEDPL 426

Query: 427 KIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I A ++ G+           + + +R  AI  A+    + DV+V+AGKGHE    V  G
Sbjct: 427 AILAAMVEGVLKVPQAERAHLVVEPDRAAAIALALGRARRGDVVVIAGKGHEQGQYVA-G 485

Query: 479 EKKMSVDCDIIREILGLIL 497
                 D +++R  L  ++
Sbjct: 486 RVLPFDDREVVRAELRRLV 504


>gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 495

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 134/514 (26%), Positives = 223/514 (43%), Gaps = 39/514 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +       E+I+       + ++ + +E+  ++++I    +FV I G K D H  I
Sbjct: 1   MKLIENAEGLDIEIISG------ELQD-EFSELVFNTKNIVKDCLFVCIKGAKFDAHDAI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            + + QGA+A+VV             R +  ++ V +TR  L+  ++  +  HP   + +
Sbjct: 54  DEIVKQGAKAVVVQKDIK--------RDDICVIKVSDTRVALARLSAAYFS-HPAKKMKI 104

Query: 121 TGTSGKSSVASFVQQICQRSGL--SSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            G +G     +    + +  G       IG    TI    +    TTP    L K     
Sbjct: 105 IGITGTKGKTTSSYMLQKLLGQNAKVGLIGTNGITIGDTHRSTLNTTPESYELHKTFKEC 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +V +E SS  +   R++GI    G FTN+  DHI     +   F+  +      
Sbjct: 165 LDANCEYVVMEVSSQAVMLKRIEGICFDIGIFTNISHDHIG--PDEHKDFDEYLMYKSLF 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-----------AIH 286
             +    I+  +D ++  V+K + +        G      +++ +               
Sbjct: 223 FKQCKNTIVNIEDEHANYVLKTSDSKQKYTFGKGGDFDIKNIEYISNKDFLGTRIDIKCR 282

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +     SV  +  D    +PGEF VYNAL A    I  G+  A +   L+    V GR 
Sbjct: 283 EEIAEKYSVNNEISDIYVGIPGEFNVYNALSALSAAIICGVKEADLKNALKD-SRVNGRM 341

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E     S    + +DYAH + S E ++  +R     R+++VFG GG+R + +R  MG+I 
Sbjct: 342 EVA-YTSHDFNVVIDYAHNAISTESLIHTLRNYKPKRLVIVFGSGGNRSKDRRYSMGEIC 400

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
             +AD +IVT DN R E  E I A+II  +      +I   +R EAI  +IE   K D++
Sbjct: 401 GKMADFSIVTADNSRFEKTEDIIADIIEKLKPTGGEYITIPDRKEAIFYSIENAKKGDLI 460

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            + GKGHE    + NG +   +D +++ E L  I
Sbjct: 461 AIIGKGHEDYQEI-NGVRHHFLDREVVDECLEKI 493


>gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
 gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
          Length = 499

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 149/498 (29%), Positives = 226/498 (45%), Gaps = 26/498 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL  K+   L +    +     +  +     DSR +  G IF  +VG   DGH FI Q
Sbjct: 9   LEDL--KNAGLLTDIGGDWNKIPADCTLKS---DSRTVGPGDIFACVVGLHADGHRFIEQ 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
            +  G   +++    S            P + V + R  +   A+ L  +  E +   AV
Sbjct: 64  VLKAGVSYLLIQRPVSGLP--------IPWIQVTDVRAAMGYVAAALNEEPSEKMKMFAV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GKS+ +  V+ I Q  G+    +G       S +     TTP    + + L  +  
Sbjct: 116 TGTQGKSTTSYMVRSILQNCGVKCGLLGTIVYDDGSKSVLADRTTPEGSEIQQFLKNMVD 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G    S+E SSHG+ Q RL G       FTNL  +H+D+H T + Y+ AK  LF + L 
Sbjct: 176 NGCQACSMECSSHGIAQGRLSGCLYDGAVFTNLTPEHLDFHGTMENYYEAKAALFRKYLK 235

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +     A   + + +            ++    +         I   +   I    K 
Sbjct: 236 PGAAVAPNAASEHGRRLAAEFPQ--AMTWALEAPARLQGANVKLDIDGSEFDLIFDGRKM 293

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G   V NAL AA +C+A G D   V+  L  +  VPGR E +     G R+ 
Sbjct: 294 GRVHIPLSGRHNVENALGAAAVCLAEGCDEKKVVAGLALMPQVPGRMERL-NLDNGVRVV 352

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAHT++SL+ +L+ +R +T GR++ +FG GGDR  G R ++G+ A   AD   VT DN
Sbjct: 353 IDYAHTADSLKALLETLRPLTEGRLVSLFGHGGDRFAGHRSLLGRAAAQKADRIFVTMDN 412

Query: 420 PRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR+EDP KI  +I+ GI           +  R  AI  A++   + D+LV++GKG E   
Sbjct: 413 PRTEDPLKIAEQIVAGIEEVRADGCWSIELPRDAAICKALDWCRRGDLLVLSGKGPEPYL 472

Query: 474 IVTNGEKKMSVDCDIIRE 491
            + NG K    D  ++ +
Sbjct: 473 EI-NGVKYPYSDRAVVEK 489


>gi|148259079|ref|YP_001233206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|326402230|ref|YP_004282311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
 gi|146400760|gb|ABQ29287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|325049091|dbj|BAJ79429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
          Length = 481

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 192/473 (40%), Positives = 265/473 (56%), Gaps = 16/473 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E   + +++DSR ++ G IF A+ G + DG  FI        +A+   +A  L      
Sbjct: 17  PETVFSGITADSRAVRKGMIFAALPGARADGRDFIA-------QAVAQGAAAVLAPSGTR 69

Query: 86  IRSNTP---ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                P   ++     R+ L+  A+ L G  PE IL VTGT+GK+S   F++Q+   SG 
Sbjct: 70  WPPGVPPRPLIEDPEPRRRLAEIAATLAGPLPETILGVTGTNGKTSTVDFIRQMAVASGR 129

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G    I+  FA    LTTP P+ L+  L+ L + G+  V++EASSHGLDQ RL G
Sbjct: 130 PAASLGTLGLIAPGFAPGASLTTPDPVTLSDILAALRAAGIGTVALEASSHGLDQFRLHG 189

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--EVMKR 259
           ++L AG F+NL RDH+DYH    +Y  AK+RLF++LL   +PA+  AD        +   
Sbjct: 190 LRLAAGGFSNLTRDHLDYHGDMASYRRAKLRLFQDLLLPGAPAVAMADLEPDTLAALRDI 249

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A      + +VG  G    L+ + A  + Q +TI+  G   +   PLPG FQV NAL+AA
Sbjct: 250 AQARRLDLATVGAGGDLFDLRGIIATPSSQVLTIACGGVSREIELPLPGRFQVDNALLAA 309

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           GL  A G+     L+ L  L  V GR E       G   YVDYAHT ++LE +L  +R  
Sbjct: 310 GLARAAGVS--DPLDRLPGLAPVRGRLERAAVLPNGAAAYVDYAHTPDALERLLMALRPH 367

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            +GR+++VFG GGDRD+GKR +MG +A  LAD+AIVTDDNPRSEDP  IRA I+   PG 
Sbjct: 368 AAGRLVLVFGAGGDRDRGKRKLMGDVAARLADVAIVTDDNPRSEDPASIRAAILAACPGA 427

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            E G+R  AI   ++ L   DVL VAGKGHE+  IV +       D  +IRE+
Sbjct: 428 REIGDRRAAIAAGLDALRAGDVLAVAGKGHESGQIVGDAV-LPFDDAAVIREL 479


>gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 491

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 157/506 (31%), Positives = 235/506 (46%), Gaps = 28/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DLI       +              +   V+ D+  +  G +F A+ G+   G   
Sbjct: 1   MKLSDLIAGQDHHALRGTPDR------TNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHA 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  A+A+GA A++V               +  +L V + RK  ++ ASR +G+    +  
Sbjct: 55  VAPAVARGAVAVLVDEQAPT---LPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172
           +A+TGT+GK+SV+   + + +         IG               + L+TP    L  
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQY 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK+R
Sbjct: 172 LLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF         A++ ADD     + K    A       G          +    +  + T
Sbjct: 232 LF---QGLCRRAVVNADDPVGAGIRKLMPGAVTTYALDGDADY--RASDLAVDASGSRFT 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+ +    P PG F V NAL     C  +G   A +++ LE++  +PGRFE +   
Sbjct: 287 LHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERL-QI 345

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   +D+
Sbjct: 346 PGGTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTHSDL 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      DV+++AGKG
Sbjct: 406 CVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALGEAGPDDVVLIAGKG 465

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            E    V  GE     D   +RE++G
Sbjct: 466 SEPHQSV-RGELLPFSDMATVRELIG 490


>gi|271502047|ref|YP_003335073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
 gi|270345602|gb|ACZ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
          Length = 494

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 169/497 (34%), Positives = 245/497 (49%), Gaps = 13/497 (2%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
               L + L+ +     ER + E++ DSR   AG +FVA+VG+K DG  +IPQAIAQG  
Sbjct: 2   TDRNLRDVLAPWVNDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVA 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           A+V  +  +  D + T     P++ + +  + LS  A R Y +      ++ VTGT+GK+
Sbjct: 62  AVVAQADDATPDGTLTEMHGVPVIYLAHLNQRLSALAGRFYRQPSTALQLIGVTGTNGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +    + Q  Q  G +S  +G            +  TT S + + + LS L  QG    +
Sbjct: 122 TTTQLLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAA 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSHGL QHR++ +   A  FTNL RDH+DYH     Y  AK RLF E    +     
Sbjct: 182 MEVSSHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQVGQKVIN- 240

Query: 247 YADDAYSKEVMKRAHNAGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ADD   +  + R  +A    +       + +++    +    +   V            
Sbjct: 241 -ADDEVGRRWLSRLPDAVAVSVAGSVDSSRARWLKATHIDYHDSGFTVQFDSSWGAGAIN 299

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L GEF V N L+A    +++G     ++E    L  V GR E    + R   + VDYA
Sbjct: 300 SRLMGEFNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLASGRPT-VVVDYA 358

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L   R    G +  VFGCGGDRD+GKRP+MG IA  LAD  IVTDDNPRSE
Sbjct: 359 HTPDALEKALAAARLHCRGTLWCVFGCGGDRDRGKRPLMGAIAEQLADRVIVTDDNPRSE 418

Query: 424 DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP+ I  +I+ G+           R EA+ +A+      DV++VAGKGHE   +V N   
Sbjct: 419 DPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKGHEDYQLVGNERL 478

Query: 481 KMSVDCDIIREILGLIL 497
               D   +  +LG+I+
Sbjct: 479 DY-SDRITVARLLGVIV 494


>gi|78185154|ref|YP_377589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
 gi|78169448|gb|ABB26545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
          Length = 502

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 227/501 (45%), Gaps = 15/501 (2%)

Query: 9   KDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +   EL+  + + P       +I  V+SDSR    G +FV + G + DG LF  QA+   
Sbjct: 3   QLLDELLRDVGLTPPAGGTNPQIEAVTSDSRLAGPGSLFVGLPGERVDGGLFWRQALNA- 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSG 125
             A       +          +  ++V +     L   AS  + +  E +  L VTGT+G
Sbjct: 62  -GAAAAVIGPAAAASDPPGDHDQVLVVSEPVASTLGELASSFWNRPSERMALLGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++    ++ +    G S+   G   +     +     TT     L   LS  +S G   
Sbjct: 121 KTTTTYLIEHLALACGRSTALFGTLVNRWPGHSVTATHTTAFADRLQAQLSEAASAGSQL 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++E SSH L QHR+ G +     FTNL +DH+DYH + Q YF AK  LF E L +  PA
Sbjct: 181 AAMEISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMQDYFEAKALLFSEALLQAGPA 240

Query: 245 I-IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D      +     + C   S       + ++ +          +     +  F 
Sbjct: 241 RAVVNGDDPWGAKLAERLGSQCWRSSFTDSTAELRMEDLSMTSRGVSGRLISPLGEGAFQ 300

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF----VGTNSRGGRIY 359
            PL G F + N L A G+ +   +    +L  +     VPGR E         +    + 
Sbjct: 301 SPLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAMTNSLPTVL 360

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT + LE  L   R    G++I VFGCGGDRD+GKRP M  IA  LAD  +VT DN
Sbjct: 361 VDYAHTPDGLENALAAARPFAEGKLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDN 420

Query: 420 PRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           PR+EDP++I  +++ GIP     + + +R  AI   I   +  D+++VAGKGHE   I+ 
Sbjct: 421 PRTEDPQRILEDVLQGIPDGVDRVVESDRGVAIAQTIAEADAADLVLVAGKGHEDYQILG 480

Query: 477 NGEKKMSVDCDIIREILGLIL 497
             EK    D +  ++ L L L
Sbjct: 481 T-EKVHFDDREEAQKALRLRL 500


>gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 491

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 135/476 (28%), Positives = 230/476 (48%), Gaps = 17/476 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS-AT 85
           + +I ++  DS+      +F A++G   DGH +I  A + GA   V+S    LQ+     
Sbjct: 20  DLEIEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVE 79

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS 143
           I  N+  ++V++TR  L+  ++  +G   +   I+ +TGT GK++V+ +++ +   S +S
Sbjct: 80  IIQNSTFILVEDTRVALATMSAEFFGHPSKELTIVGITGTKGKTTVSGYIKSVLDNSDIS 139

Query: 144 SFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG      +        TTP    + K +  +   GV  +++E SS G+  +R+ GI
Sbjct: 140 CGVIGTNGIYFANQYFKTVNTTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHGI 199

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +     FTNL  DHI   +     F         L      +II  DD  SK +++++ +
Sbjct: 200 EFDYAIFTNLSHDHIGEKE--HPTFEHYRECKSMLFAMSKYSIINIDDENSKVMIEKSKD 257

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +           K +    N   +    E  +  ++    G+F VYNAL    LC
Sbjct: 258 YKTYSI---DSSSDFQAKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTIMLC 314

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+    +   LEK HV  GR + +       ++ +DYAH   SLE +L+ ++ +   
Sbjct: 315 EQLGLSYQSIYTGLEKAHV-KGRLQVI-DGFTDIKVIIDYAHNEVSLENVLQTVKELKPK 372

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PG 438
           R+IV+FG  G R Q +R  +  +A    D+ IVT DNP +E+P+KI  EI+  I      
Sbjct: 373 RLIVLFGSVGTRSQNRREELATVASKYCDVIIVTSDNPDTENPQKIIDEIVSHISQDKKK 432

Query: 439 FIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +     +R  AI+ AIEM  K DV+V+AGKGHE   ++ NG ++   D + +++ +
Sbjct: 433 YTYCYADRAVAIQKAIEMSQKGDVIVLAGKGHEEYQLI-NGVREHFSDEEEVKKYI 487


>gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70]
 gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70s]
 gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis Sweden2]
 gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/150]
 gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/11023]
          Length = 483

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 137/501 (27%), Positives = 238/501 (47%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR +  G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLRNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+A GA A++ S              +   ++ ++     +  A+R Y     +  ++
Sbjct: 54  SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+++ +RSG  +  IG    I       +  TTP  I L K  + +
Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   +E SS G+   R+   + +AG  TN+  DH+D+H + + Y  AK + F   
Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP++  A++  D  Y+   +  +                    ++    +     I  +G
Sbjct: 225 LPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADY--RADRLKLYSSGSSYDIWYQG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K F     L GE  VYN L +  +     G D A ++  +  L    GR           
Sbjct: 283 KVFLCETSLIGEHNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRL--DPILLGPF 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +Y+DYAHT ++L+ + + +  +    GR+I+VFGCGGDRD+ KRP+M K++      + 
Sbjct: 341 PVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVSEHYG-FSF 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE  
Sbjct: 400 VTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGY 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I  +       D +++ E L
Sbjct: 460 QIFKHQTIV-FDDREVVCEAL 479


>gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate
           ligase protein [Xanthomonas albilineans]
          Length = 494

 Score =  282 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 154/489 (31%), Positives = 225/489 (46%), Gaps = 12/489 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++QL       RE +++ ++ DSR ++ G  FVAI G    G  F+ QA A GA AI+  
Sbjct: 7   LSQLLPDVALPREVQVSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                   ++        + V   R  +   A +L+G   +   ++ VTGT+GK+S+   
Sbjct: 67  PPAPADLPASADA-----IAVPGLRARMGAMADQLHGHPSQAMTMVGVTGTNGKTSIVQL 121

Query: 133 VQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q     G  S  IG               TTP  + L   L+ L   G   V++E SS
Sbjct: 122 LTQAWHVLGTCSGSIGTLGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+D +      FTNL RDH+DYH+   AY  AK RLF     + +   +     
Sbjct: 182 HALDQGRVDAVHFDVAVFTNLTRDHLDYHRDMAAYGAAKARLFAMPGLRAAVVNLDDTFG 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                          V S G  G  +  + +          + V  +      PL G F 
Sbjct: 242 RQLLHALDPALRRIGVSSRGRDGATVRAEALHLDARGIGFDLVVGTQRHALQSPLLGRFN 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L  AG   A+ +    +   L +L  + GR   +G       + VDYAHT ++LE 
Sbjct: 302 VDNLLAVAGALYALDVPPVRIAATLAQLQPIRGRMNRLGGRDAQPLVVVDYAHTPDALEQ 361

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+++R    GR++ VFGCGG+RD GKRP M  IA  L+D   VTDDNPR ED E+I A+
Sbjct: 362 ALQSLRDHAKGRLLCVFGCGGERDAGKRPQMAAIAQRLSDYVFVTDDNPRGEDGERIVAD 421

Query: 432 IIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ G  G         R +AI  AI M   +D++++AGKGHE    +  G K    D ++
Sbjct: 422 ILAGFDGMTTVQVQRERAQAIAAAIAMAGAEDIVLIAGKGHEPYQEIA-GIKHPFDDTEV 480

Query: 489 IREILGLIL 497
             + L + +
Sbjct: 481 AAQTLRVRV 489


>gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL S4-171]
          Length = 440

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 132/450 (29%), Positives = 204/450 (45%), Gaps = 24/450 (5%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           F  +A   GA A+V      +           P++ V +T++ +++ A+  YG   +   
Sbjct: 1   FAKKAEELGAVAVVAEKPVDVT---------IPVIYVRDTKRAMAMLANYFYGSPTQALK 51

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT+GK++V+  V+QI + SG  +  IG     I     + + TTP  + L +   
Sbjct: 52  LVGITGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFR 111

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK----- 230
            +  +GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y  AK     
Sbjct: 112 EMLLRGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFA 171

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                        A++ ADD  S  +                         +    +   
Sbjct: 172 QLGNSYHASNPKIAVLNADDEESVRMQTATAAHVITFGIKENADF--RATNIEITSHGST 229

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++     F     + G F VYN L A     A+ I     +  +E +  V GRFE V 
Sbjct: 230 FNLTTPAGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELV- 288

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + VDY+HT + L  +L+ I    + R+ VV GCGGDRD+GKRP M KIA+  A
Sbjct: 289 NAGQDFPVIVDYSHTPDGLLNVLQTIDEFANNRVFVVVGCGGDRDKGKRPQMAKIAVQYA 348

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              + T DNPRSE+P  I  ++I G+P    ++   NR +AI+ AI      DV+++AGK
Sbjct: 349 TNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGK 408

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           GHE   I+ + E     D    R  +   L
Sbjct: 409 GHEDYQIIGD-EVINFDDRLEARLAIEKRL 437


>gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276]
 gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276s]
 gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9768]
 gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11222]
 gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11074]
 gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9301]
 gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-EC]
 gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-LC]
          Length = 483

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 136/501 (27%), Positives = 238/501 (47%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR +  G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLQNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+A GA A++ S              +   ++ ++     +  A+R Y     +  ++
Sbjct: 54  SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+++ +RSG  +  IG    I       +  TTP  I L K  + +
Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   +E SS G+   R+   + +AG  TN+  DH+D+H + + Y  AK + F   
Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFAS- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP++  A++  D  Y+   +  +                    ++    +     I  +G
Sbjct: 225 LPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADY--RADRLKLYSSGSSYDIWYQG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + F     L GE  VYN L +  +     G D A ++  +  L    GR           
Sbjct: 283 QVFPCETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRL--DPILLGPF 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +Y+DYAHT ++L+ + + +  +    GR+I+VFGCGGDRD+ KRP+M K++      + 
Sbjct: 341 PVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVSEHYG-FSF 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE  
Sbjct: 400 VTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGY 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I  +       D +++ E L
Sbjct: 460 QIFKHQTIV-FDDREVVCEAL 479


>gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
 gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
          Length = 909

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 149/481 (30%), Positives = 233/481 (48%), Gaps = 25/481 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR IQ G +FVA  G+K DG  F+  AI  GA AI++     +      +   TP
Sbjct: 17  HLRLDSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILIEDNLDI------VVLQTP 70

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +LVV N R+ L   A   YG     I  +A+TGT+GK+S A ++ +      +    IG 
Sbjct: 71  VLVVKNLRQKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKALNSINIPCATIGT 130

Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             TI    ++    LTTP  + + + L+ L ++G+  V++EASS G++Q RLD +++   
Sbjct: 131 LGTILPSGENLGGSLTTPDVLSVHRILATLVARGIEIVTIEASSIGIEQGRLDSVQIKIA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL  DH+DYH++ Q Y  AK  LF     + +   +  D A  +   K   +     
Sbjct: 191 GFTNLTLDHLDYHKSMQEYEEAKTSLFLRDGLECAIFNLD-DMAGVRMYEKSKASRNLGY 249

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +      I   ++          I +       +  L G   +YN L+ AG+   + +
Sbjct: 250 SILSNSKAVITASELEFHDYGLSFNIQLPEGKSQVITRLAGRHNIYNLLLVAGVLSHLNV 309

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG-------GRIYVDYAHTSNSLEMILKN---IR 377
               ++E +  +  VPGR + V               +YVDY+HT ++L   +K    ++
Sbjct: 310 SVEKIVEIIATIRPVPGRLKLVDIQPFSSSRLINLPHVYVDYSHTPDALANAIKALEVVK 369

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            I  G++  VFGCGGDRD+ KRP+M K+A + AD   +T DNPR+E+   I  +I+ G  
Sbjct: 370 NIRGGKMACVFGCGGDRDKTKRPVMAKVASECADDIYITSDNPRTENASDILNDILKGAK 429

Query: 438 GF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +     +R   I  AI   +K D +++AGKGHE    + NG K    D       +GL+
Sbjct: 430 KYSFSHIDRAYTILHAILNASKNDTILIAGKGHEDYQEI-NGVKHHFDDSHWA--GIGLM 486

Query: 497 L 497
           L
Sbjct: 487 L 487



 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 140/386 (36%), Gaps = 27/386 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR +++  IF+AI G   DGH F+   I       +VS            ++    
Sbjct: 493 INTDSRTLKSDEIFLAIKGENFDGHDFLET-ID--CIGAIVSKPNP--------KAKVRQ 541

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +VD+T   +   A     +    ++AV G++GK++    +  I +              
Sbjct: 542 FIVDDTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMIASILKSYAGDGAYFATRGN 601

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +++     +  +   +     ++           +E  S GL        K      TN 
Sbjct: 602 LNNHIGVPK--SLLSLTDNHRIAVFELGMNHPGEIEYLS-GLA-------KPTIAVVTNA 651

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++ ++ +A       +F+  L  +  AI      YS    +++ +          
Sbjct: 652 QREHQEFMKSVEAVARENGSVFQS-LDADGVAIYPRSSPYSYIWDEQSRHCKSITFG--- 707

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +   ++   +         T+ VE +  +    + G+  + NAL A    ++ GID   +
Sbjct: 708 EAGSVNATNISYDSEGSSFTVDVESEKLNIHLSILGDHNIQNALAAIATTLSAGIDKKYI 767

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
              L +   V GR +          +   Y    +S+   +  ++T+ + R +V+   G 
Sbjct: 768 ESGLAEFKAVKGRLQKHILKDGTVILDDTYNANPDSVIAAIDILKTLATPRTLVLGDMGE 827

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT 416
            G         +G  A +     ++T
Sbjct: 828 VGVDGVQMHEEIGTYARENGIDNLLT 853


>gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 157/470 (33%), Positives = 244/470 (51%), Gaps = 12/470 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--SATIRSNT 90
           V SDSR +  G IFVA+ G  EDG  FIP A+  GA  +V            ++      
Sbjct: 19  VRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPGGPEDAALQASVRAEGC 78

Query: 91  PILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            ++  ++ R+ L   A      G     IL VTGT+GK++    ++++   +G     +G
Sbjct: 79  RVVYHEDPREALWRLAEARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAGHKVGVLG 138

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             S      ++   LTTP P+ +   L+ + + GV    +E SSH +DQ R+ G+     
Sbjct: 139 TVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEVSSHAIDQQRVCGVPFAGA 198

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL +DH+D+H+  ++YF  K RLF EL   E    + ADD + + +++    A    
Sbjct: 199 AFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLELCPRALSFG 258

Query: 268 LSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           L  G   +     ++  A     ++ + +EG+ ++   PL G F   N L    L +  G
Sbjct: 259 LQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASNLLTVQALALETG 318

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D       LE    V GR E V  NS+G  ++VDYAHT ++L  +LK +R     RII 
Sbjct: 319 LDPGQFK-ALESFTGVCGRLERV-ENSQGLNVFVDYAHTPDALVNVLKALRGAGFKRIIT 376

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKG 443
           VFGCGG+RD+ KRP+MG+     AD+A++T DNPR E+PE I  +++ G+      + + 
Sbjct: 377 VFGCGGNRDRTKRPLMGEAVARYADVAVLTSDNPRFEEPEAILRDVLPGLKEAREVLVEV 436

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  A   A++ML K D L++AGKGHE   I+  G K    D +++RE+L
Sbjct: 437 DRHAATARALDMLGKDDALLIAGKGHEDYQIIQ-GVKHHYSDQEVVRELL 485


>gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae CWL029]
 gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae J138]
 gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae TW-183]
 gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           J138]
 gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 483

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 131/501 (26%), Positives = 217/501 (43%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L++    ++  ++          ++  ++ DSR +  G IF+A  G + DG+ F 
Sbjct: 1   MDLKELLHGVQAKIYGKVRPL-------EVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+A GA AI  S              +   ++  N  +  +  +++ Y         +
Sbjct: 54  VDALANGAIAIASS--------LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   ++ +       S  +G    I       +  TTP+P  L K L+ +
Sbjct: 106 GVTGTNGKTTVTCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q    V +E SS GL   R+          TN+  DH+D+H T + Y  AK +LF  +
Sbjct: 166 VRQNRDAVVMEVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFETYVAAKAKLFSLV 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P     I       S+ +          +              +    +  + T+    
Sbjct: 226 PPSGMVVINTDSPYASQCIESAK---APVITYGIESAADYRATDIQLSSSGTKYTLVYGD 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +         G++ VYN L A     A    D   +LE +      PGR           
Sbjct: 283 QKIACSSSFIGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRL--DPVLMGPC 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +Y+DYAHT ++L+ +L  +  +    GR+IVVFGCGGDRD+ KR +M ++       A+
Sbjct: 341 PVYIDYAHTPDALDNVLTGLHELLPEGGRLIVVFGCGGDRDRSKRKLMAQVVERYG-FAV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPRSE PE I  EI  G     +  + +R +AI  A+ + + +D++++AGKGHE  
Sbjct: 400 VTSDNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKGHEAY 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I  +       D   + E+L
Sbjct: 460 QIFKHQTVA-FDDKQTVCEVL 479


>gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
 gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
          Length = 496

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 151/490 (30%), Positives = 228/490 (46%), Gaps = 22/490 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
             +F    R+  I E++ DSR ++ G +F+A+ G K DG   I  A+         + AY
Sbjct: 7   SKLFAHASRDPLIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADAL----ARGAAAVAY 62

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
             Q  +    ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q
Sbjct: 63  EEQGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQ 122

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                G     IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH L
Sbjct: 123 ALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSHAL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q R+  ++      TNL RDH+DYH + +AY  AK +LF     +     +  DD + +
Sbjct: 183 EQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNL--DDDFGR 240

Query: 255 EVMKRAHNAGCRVLSVGY--------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            +                            +  ++     +  + T+     +      L
Sbjct: 241 RLAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERILRSQL 300

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F + N L A    +A+      +L+   +L    GR + +G   +   + VDYAHT 
Sbjct: 301 LGRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPL-VVVDYAHTP 359

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP 
Sbjct: 360 DALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPS 419

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +I  +I  G            R EAI   I      DV+V+AGKGHE    + NGE+   
Sbjct: 420 RIFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI-NGERHDF 478

Query: 484 VDCDIIREIL 493
            D     + L
Sbjct: 479 SDLTEAEKAL 488


>gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
 gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
          Length = 496

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 151/500 (30%), Positives = 227/500 (45%), Gaps = 42/500 (8%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI----------AQG 67
             +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+           QG
Sbjct: 7   SKLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQG 66

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A                   ++ P++ V      LS  A R YG+     N++ VTGT+G
Sbjct: 67  ASV--------------LPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SV   V Q     G     IG   T      Q  RLTTP PI +   L+ L   G   
Sbjct: 113 KTSVTQLVAQALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKA 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH L+Q R+  ++      TNL RDH+DYH + +AY  AK +LF     +    
Sbjct: 173 VAMEVSSHALEQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVV 232

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVG--------YQGKFIHLKKVCAIHNKQQVTISVE 296
            +  DD + + +                            +  ++     +  + T+   
Sbjct: 233 NL--DDDFGRRLAADFARRPSVDHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTA 290

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +      L G F + N L A    +A+      +L+   +L    GR + +G   +  
Sbjct: 291 QGERILRSQLLGRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPL 350

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VT
Sbjct: 351 -VVVDYAHTPDALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVT 409

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DDNPR+EDP +I  +I  G            R EAI   I      DV+V+AGKGHE   
Sbjct: 410 DDNPRTEDPSRIFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQ 469

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            + NGE+    D     + L
Sbjct: 470 EI-NGERHDFSDLTEAEKAL 488


>gi|153809827|ref|ZP_01962495.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
 gi|149834005|gb|EDM89085.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
          Length = 491

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 126/501 (25%), Positives = 216/501 (43%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+  L+            I      E++++ V  DSR ++   +F+ I G   DGH F+
Sbjct: 1   MKVSTLLEGLKY-------ICCQGSTEQEVSTVVYDSRKVEENSLFICIRGAVVDGHKFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I +GA+         + +       +  ++ V +TR  ++  ++  +G   E +  +
Sbjct: 54  PDVIRKGAK-------TLVVEEEVEAPEDVTVIKVADTRYAMAFISAAYFGHPAEKLKTI 106

Query: 121 TGTSGKSSVASFVQQICQRS--GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
             T  K    +           G     IG   + I   +     TTP    + +    +
Sbjct: 107 GITGTKGKTTTTYMVKSILENAGYKVGLIGTIEAIIGEESIPACNTTPESYLVQEYFRKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  G     G FTN+  DHI  ++ +       +R    L
Sbjct: 167 VDAGCDCVVMEVSSQGLMLHRTQGFVFDYGIFTNIEPDHIGPNEHKDFDDY--LRCKSML 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVE 296
           L +    I+  DD + + +++                 +      V              
Sbjct: 225 LQQCRVGIVNRDDEHFERIIEGHTCQLETYGFSPEADLRAEDAHMVGGKGYLGISYQLKG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +F     +PG+F +YN+L A  +C    +    +++ L+ +  V GR E +  +    
Sbjct: 285 LMEFPVEIDIPGKFSIYNSLTAIAICRHFNVSQENIIKALK-VARVKGRIEVIKVSDE-F 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + +LE +L  +R     R++ +FGCGG+R + +R  MG+++  LAD+ I+T
Sbjct: 343 TLMIDYAHNAMALESLLTTLREYHPHRLVCLFGCGGNRAKSRRYEMGEVSGRLADLTIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR E+P+ I  +I  GI      ++E  +R EAI  AI      D++V+AGKGHE  
Sbjct: 403 SDNPRFEEPQDIIDDIKIGISKTDGKYVEICDRKEAIAYAIHHGEPGDIIVLAGKGHEDY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  G+K    +  +I EIL
Sbjct: 463 QEIK-GKKYPMDERVLIAEIL 482


>gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 458

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 227/464 (48%), Gaps = 23/464 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           ++SR ++ G  F+AI     DGH +I +AIA GA  I+        +           ++
Sbjct: 7   TNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGATKIIAEHGSYKVET----------II 56

Query: 95  VDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           V++TR++L   L+ +         ++ +TGT+GK++      QI +    +   +G    
Sbjct: 57  VESTREYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGF 116

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 +    TTP    L   L      GV +  +E SSH LD+ R+ G++    +FTN
Sbjct: 117 YYGDAKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEVSSHALDKDRIHGLEFDEVAFTN 176

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH+T + Y NAK  LF +    +  AII  DD + +  +  ++N        G
Sbjct: 177 LTQDHLDYHKTLENYANAKRILFTK-TRNDKIAIINGDDEHYQHFVLESNNNIII----G 231

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                + + ++   H            ++     + G + +YN L+A  L   +G+    
Sbjct: 232 QHDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIED 291

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L   +KL    GR E +   +    I+VDYAHT +++  +LK+     +GRII + GCG
Sbjct: 292 ILALNDKLKAPAGRMELLKYGTNS--IFVDYAHTPDAVINVLKSAEEFKNGRIITIIGCG 349

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAI 449
           GDRD  KRPIMGK AL+ +D  I T DNPRSEDP+ I  +I +G+    F  + +R +AI
Sbjct: 350 GDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFEIEVDRQKAI 409

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              ++ L   D+L++ GKGHE   I   G K    D + + + +
Sbjct: 410 IKGMQQLKHNDILMILGKGHEDYQITKTG-KHHFSDQEEVMKYI 452


>gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
 gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
          Length = 487

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 228/482 (47%), Gaps = 14/482 (2%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            + P    +  I E++ DSR ++ G +F+A+ G + DG   +  AI         + AY 
Sbjct: 7   HLLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAI----ARGAAAVAYE 62

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI 136
            +     +     ++ V +    LS  A R YG+   N+  + VTGT+GK+SV+  + Q 
Sbjct: 63  SEGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQA 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             R G     IG   T      +  R TTP  I +   L+ L  +G   V++E SSHGLD
Sbjct: 123 LDRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLD 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++     FTNL RDH+DYH T +AY  AK RLF           +  DD + + 
Sbjct: 183 QGRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFGVPGLSCRVINL--DDGFGRA 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +      +     S+     +++  +     +     +     +     PL G F V N 
Sbjct: 241 LAGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNV 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G  + +      +L  L +L    GR + +G   R   + VDYAHT ++LE +L  
Sbjct: 301 LAAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRPL-VVVDYAHTPDALEKVLTA 359

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    GR++ +FGCGGDRD GKRP+M ++A  LAD  +VTDDNPR+E PE+I  ++  G
Sbjct: 360 LRPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILEDVRSG 419

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                       R +AI   I   N  DV+V+AGKGHE    +  GE+    D +     
Sbjct: 420 FVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKGHEDYQEI-RGERLPFSDIEEACTA 478

Query: 493 LG 494
           L 
Sbjct: 479 LS 480


>gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 495

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 133/503 (26%), Positives = 218/503 (43%), Gaps = 21/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+      L    +    Q +E +I+ +  DSR  +   IFVAI G   DGH ++
Sbjct: 1   MKLSELLTG----LEYISNRDMDQLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A  +G  A VV+           +  +  +++VD++R  LS  ++  +G   +   ++
Sbjct: 57  DSAYQKGCRAFVVNDNMD-------LAEDAIMIIVDDSRNCLSHISANFFGNPSKELKVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK+++ ++++ +  +SGL++  IG      + +      TTP    L K +  +
Sbjct: 110 GVTGTKGKTTITNYLKSVLTKSGLNTGVIGTNGVFYNDYEGKTINTTPESYELHKTIREM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV  V++E SS GL   R++ +    G +TNL  DHI   +          +     
Sbjct: 170 VDAGVKCVAMEVSSGGLMMERVNHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRLFS 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L +     I  D A               +                            +G
Sbjct: 230 LCRHGIINIDDDHASYMIDKATCDIETFSIKKPSDYRAEDISLTRTKTSLGVDFKYIRDG 289

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +        PGEF VYNAL        +GID   +L  L    V  GR E +  +     
Sbjct: 290 QASQTHIASPGEFSVYNALAVIATANYLGIDKDKMLSALATAQVD-GRVEVIP-SIPDIT 347

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +DYAH   SLE +L+ +      R+I VFG  G R   +R  +G +A  L DI+I+T 
Sbjct: 348 VVLDYAHNGVSLENVLETLLKYKPRRLICVFGSIGGRSVLRRKELGDVAAKLCDISILTT 407

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNP  EDP  I  +I           ++  +R +AI   IE+    D+++VAGKGHE   
Sbjct: 408 DNPDDEDPMNIINDIEESFVDSKCQVLKIVDRSQAILKGIEIAQPGDMVIVAGKGHEKYQ 467

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           I+ +GE+    +   + + + ++
Sbjct: 468 II-HGERVFYDEKAEVLKAIEIV 489


>gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 483

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 136/501 (27%), Positives = 238/501 (47%), Gaps = 30/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR +  G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLQNIPAKIYGKVESIP-------VRNLTRDSRCVGVGDIFIARQGQFCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+A GA A++ S              +   ++ ++     +  A+R Y     +  ++
Sbjct: 54  SQAVANGAIAVLSS--------LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++V+  V+++ +RSG  +  IG    I       +  TTP  I L K  + +
Sbjct: 106 GITGTNGKTTVSCLVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   +E SS G+   R+   + +AG  TN+  DH+D+H + + Y  AK + F   
Sbjct: 166 VKQNLSAAVMEVSSIGMALGRVRETEFLAGVLTNIISDHLDFHGSLEEYIAAKKQFFAS- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP++  A++  D  Y+   +  +                    ++    +     I  +G
Sbjct: 225 LPEKGIAVVNLDCEYAPSFLNGSQARAVSYAIHQEADY--RADRLKLYSSGSSYDIWYQG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           + F     L GE  VYN L +  +     G D A ++  +  L    GR           
Sbjct: 283 QVFPCETSLIGEHNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRL--DPILLGPF 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            +Y+DYAHT ++L+ + + +  +    GR+I+VFGCGGDRD+ KRP+M K++      + 
Sbjct: 341 PVYIDYAHTPDALDNVCRILLQLLPKDGRLIIVFGCGGDRDRVKRPLMAKVSEHYG-FSF 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M + +D+++VAGKGHE  
Sbjct: 400 VTSDNPRTEDPDQIIADICKGFSTDHYVVESDRKLAIEKAISMASDKDIVLVAGKGHEGY 459

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            I  +       D +++ E L
Sbjct: 460 QIFKHQTIV-FDDREVVCEAL 479


>gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
 gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
          Length = 487

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 148/472 (31%), Positives = 235/472 (49%), Gaps = 14/472 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P       I E++ DSR ++ G +F+A+ G ++DG + I  A+         + A+  
Sbjct: 8   LLPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAV----ARGAAAVAFEA 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQIC 137
           +  +     +  ++ V      LS  A R YG+     +++ VTGT+GK+SV+  + Q  
Sbjct: 64  EGAAPMHAESAVLVPVKGLAGQLSAIAGRFYGEPSRALHLIGVTGTNGKTSVSQLLAQAL 123

Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     +G   T    A +  + TTP P+ +   L+ L   G   V++E SSHGLDQ
Sbjct: 124 DLLGERCGIVGTLGTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  ++     FTNL RDH+DYH + +AY  AK +LF     +     +  DDA+ +E+
Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFAWPNLRCRVINL--DDAFGREL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            ++AH++     S+     F++  +     +  +  +     +      L G F + N L
Sbjct: 242 AQQAHDSRLIGYSLSDASAFLYCSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  + +      +L+ L +L    GR + +G   +   + VDYAHT ++LE +L+ +
Sbjct: 302 AVVGALLGMDYGLDEILKVLPQLQGPAGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEAM 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR++ +FGCGGDRD+GKRP+M  +A  LAD+  VTDDNPRSEDP +I A+I  G 
Sbjct: 361 RPHVQGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSEDPAQIVADIRAGF 420

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
                      R +AI   I      DVLV+AGKGHE    +  G +    D
Sbjct: 421 CAPEQVQFIHGRGDAIARLIAQAEAADVLVLAGKGHEDYQEI-TGVRHPFSD 471


>gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 494

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 132/477 (27%), Positives = 215/477 (45%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N++++DSR  +AG IFVA  G   D H F    + QG + +VV+ A  LQ      
Sbjct: 20  DIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  S     LYG   +    + VTGT+GK+S+A+ +  I ++ G  S
Sbjct: 75  --DVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKGS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        + L ++   II ADD +S  +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPFSTYLKSVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                       Q        +                 +    P  G F + N + A  
Sbjct: 253 PYESLTYGI--EQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYIGRFNIANLMAAML 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G     V + +  L  V GR E +  +     + +DYAHT++ +  ++  +    
Sbjct: 311 GVWVKGAPLETVTKVVADLEPVEGRLEVLDPS-LPIDLIIDYAHTADGMAKLIDAVEPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVASR-ADYVIFTPDNPANDDPKMLTAELAKGATHDR 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           ++E  +R E IR AIE+    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri DSM 4166]
          Length = 487

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 228/481 (47%), Gaps = 14/481 (2%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    +  I E++ DSR ++ G +F+A+ G + DG   +  AI         + AY  
Sbjct: 8   LLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAI----ARGAAAVAYES 63

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
           +     +     ++ V +    LS  A R YG+   N+  + VTGT+GK+SV+  + Q  
Sbjct: 64  EGLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQAL 123

Query: 138 QRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            R G     IG   T      +  R TTP  I +   L+ L  +G   V++E SSHGLDQ
Sbjct: 124 DRLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVAMEVSSHGLDQ 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+  ++     FTNL RDH+DYH T +AY  AK RLF           +  DD + + +
Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARLFGVPGLSCRVINL--DDGFGRAL 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 +     S+     +++  +     +     +     +     PL G F V N L
Sbjct: 242 AGEERESRLISYSLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  + +      +L  L +L    GR + +G   R   + VDYAHT ++LE +L  +
Sbjct: 302 AAVGALLGMDYPLDEILAVLPELEGPAGRMQRLGGGDRPL-VVVDYAHTPDALEKVLTAL 360

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R    GR++ +FGCGGDRD GKRP+M ++A  LAD  +VTDDNPR+E PE+I  ++  G 
Sbjct: 361 RPHARGRLLCLFGCGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERILDDVRSGF 420

Query: 437 PG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                      R +AI   I   N  DV+V+AGKGHE    +  GE+    D +     L
Sbjct: 421 VNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKGHEDYQEI-RGERLPFSDIEEACTAL 479

Query: 494 G 494
            
Sbjct: 480 S 480


>gi|291003734|ref|ZP_06561707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 486

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 151/472 (31%), Positives = 217/472 (45%), Gaps = 24/472 (5%)

Query: 41  QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSATIRSNTPILVVD 96
           + G +F A+ G +  G  F   A+  GA A++   A      L D          +LV D
Sbjct: 2   RPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHD 61

Query: 97  NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI- 153
           + R  L   A+++YG+  +   IL VTGTSGK++    ++     +G ++  +G   T  
Sbjct: 62  DPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETRI 121

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +    D+  TTP    L   L+ +   GVTHV +E SSH L   R+ G +   G FTNL 
Sbjct: 122 AGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLS 181

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+D+H+    YF AK  LF+     E           +    K        V + G  
Sbjct: 182 QDHLDFHRDLDDYFQAKALLFDGRSEHEVVCT------DTDWGRKLVKPGTITVSTTGDA 235

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                  +      ++       G        LPG F + NAL+A G+  A  + +  + 
Sbjct: 236 SWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWAIE 295

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             L ++ V PGR E V          VDY+H   ++  +L   R    GR+IVV GCGGD
Sbjct: 296 RGLAEVDV-PGRMERVALGQ-DFTAVVDYSHKPGAVSAVLDAARAQAEGRVIVVLGCGGD 353

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNR 445
           RD  KRP+MG+ A   + + IVTDDNPRSEDP  IRA ++ G            IE+G+R
Sbjct: 354 RDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERGDR 413

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
            EAI  A+   +  D++VVAGKGHET   V  G      D + +   L   L
Sbjct: 414 REAIAEAVARASSGDIVVVAGKGHETGQEVA-GVVHPFSDREELAAALRRRL 464


>gi|187479354|ref|YP_787379.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella avium 197N]
 gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bordetella avium 197N]
          Length = 939

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 154/474 (32%), Positives = 237/474 (50%), Gaps = 19/474 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR +  G +F+A  G + DG  +I  A+  GA  ++  S       + ++ +++ 
Sbjct: 29  HLRLDSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVLYDSDA----LTQSVVADSR 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V   R  L   A   YG+      +LAVTGT+GK+S   ++ +   R G     IG 
Sbjct: 85  VLPVAGLRGMLGELADGWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIGT 144

Query: 150 TSTISSFAQD--NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +          LTTP  I L + ++ +   G   V++EASS GL+Q R+D ++LIA 
Sbjct: 145 LGGLLPDGVSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAA 204

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            +TNL RDH+DYH T + Y  AK  LF    P    A+I ADDA  + ++ +        
Sbjct: 205 GYTNLTRDHLDYHGTMEQYEAAKALLFNW--PGLQAAVINADDAAGRRLLAKLPVGLASA 262

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            ++ +    +    + A  + Q  T++        +  L G   V N L+ AGL + +G 
Sbjct: 263 YAIDHAEADVRAFDLQATAHGQVFTLATSEGQAQVVTGLLGHHNVSNLLLVAGLLLRLGW 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI- 384
             A V   +     V GR + V    +++G  + VDYAHT ++LE  L  +R +   R  
Sbjct: 323 PLAAVAREVAAAAPVDGRLQAVAPVGSAQGPLVVVDYAHTPDALERALLALRPVAQARNG 382

Query: 385 --IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GF 439
             + +FGCGGDRD GKRP MG+IA +LAD  IV+ DNPRSE P+ I  +++ G+      
Sbjct: 383 ALVCLFGCGGDRDPGKRPEMGRIAGELADRIIVSSDNPRSEAPQAIIDQVLAGVGPDLAL 442

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + +R  AI  AI     +DV+++AGKGHET   +  G +    D +  R  L
Sbjct: 443 RAESDRALAILHAIWDSWPEDVVLLAGKGHETYQEIA-GRRLAFDDREWARAAL 495



 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 152/423 (35%), Gaps = 32/423 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK----------INEVSSDSRHIQAGWIFVAIVGNKED 55
           L+     E   +++   + + +R+          +  VS+D+R + A  IFVAI G   D
Sbjct: 466 LLAGKGHETYQEIAGRRLAFDDREWARAALLLPHVAGVSTDTRSVAADEIFVAISGENFD 525

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH ++             + A +         S+ P LV+  TR  L   A+    +   
Sbjct: 526 GHRYL--------AQAQAAGACAAVVAHRVSDSSLPQLVLGETRHALGRLATAWRARFSL 577

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++    +  I       + ++  +   ++           P+ L     
Sbjct: 578 PVIAVTGSNGKTTTKEMISAILAAWQGEAHRLATSGNFNNDI-------GLPLTLL---R 627

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    V +  +  G   +     +       N  R+H ++    +A   A+     
Sbjct: 628 LREGYRAAVVELGMNHPGEIAYLAPMAQASVALVNNAQREHQEFLHGVEAV--ARENGAV 685

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                E    +Y  D     +      A   +      G  ++ +K+    +     +  
Sbjct: 686 LSALPEDGVAVYPGDDVYTPIWDELAGARRVLRFGLQPGLDVYAQKIRPDASGTLCQVVT 745

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D + P+PGE  + NAL A    +A G   A  +  LE    V GR +   T++  
Sbjct: 746 PMGVADIVLPVPGEHNLRNALAAIACALAAGAPLASAVRALEGFSAVKGRMQRKETSNGT 805

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413
             I   Y    +S+ + ++ +  +   R++V+   G  GD        +G  A D    A
Sbjct: 806 ILIDDTYNANPDSVRVAIEVLAQLPGPRVLVLGDMGEVGDEGPAMHREVGGYARDQGIDA 865

Query: 414 IVT 416
           +VT
Sbjct: 866 MVT 868


>gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 497

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 144/506 (28%), Positives = 244/506 (48%), Gaps = 24/506 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L Y  FP + N          ++K + +S DSR + +  +F+AI G K+DG+ FI
Sbjct: 1   MKKNNLKYILFPWIKNT--------PQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ +   AI+  +    +       +N PIL      + +S  A+R+Y +  +   I+
Sbjct: 53  FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKII 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   + Q  +  G     +G          +  + TT S I +   L   
Sbjct: 113 GVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + + +  V++E SSHGL Q+R+  I    G FTNL +DH+DYH+  + Y +AK   F   
Sbjct: 173 AKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFS-- 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGC------RVLSVGYQGKFIHLKKVCAIHNKQQV 291
             K    I+ A+D Y+K+ +++  +               Y  K+I+   +    N   V
Sbjct: 231 QHKIKKIILNANDKYAKKWLRKLSDKYTIAVTIQNEKQKKYSTKWINATGIKYNVNSTDV 290

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         L G F + N L++    + +    + ++    +L  + GR +    
Sbjct: 291 EFESSWGQGILSTCLIGYFNIQNLLLSFASMLEMNYKLSDLINTSIQLQPILGRMQKF-D 349

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                ++ +DYAHT ++L+  L  I++    +I  +FGCGG+RDQ KRP+MG I+  +AD
Sbjct: 350 VFGKPKVIIDYAHTPDALKKALNAIKSYYKKKIWCIFGCGGERDQTKRPLMGSISEKIAD 409

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I+T+DNPR+E+  KI  EI+ G       I   NR +AI +     N  D++ ++GKG
Sbjct: 410 RVIITNDNPRNENQNKIIKEIVQGCIKKEKIIIIPNREKAISSTFFKANIDDIIFISGKG 469

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE   I+ N +     D  ++ ++L 
Sbjct: 470 HENQQIIKN-KIINYSDQKVVIKLLE 494


>gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
 gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
          Length = 555

 Score =  281 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 139/494 (28%), Positives = 219/494 (44%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L  QL          ++  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 66  LADLAGQLGAEQPGSA-AEVTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGAVA 124

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   + + +  +A      P LVVD+ R  +   A+ +YG+   +   + +TGTSGK++
Sbjct: 125 VLTDPSGAERAAAA----GLPALVVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTT 180

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   +    +         +      +  TTP    L    + +  +GV  V +E
Sbjct: 181 TAYLVEGGLRTVRSTGLIGTVEMRVGDERIKSERTTPEATDLQALFAVMRERGVDSVVME 240

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +     +  
Sbjct: 241 VSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSRLGVVNL-- 298

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           DD Y + ++  A        + G+       + V         T+     +      PLP
Sbjct: 299 DDEYGRRLVDEATVPVVTFSAEGHPDADWRAEDVRVGPLDSTFTVVGPKGERISARSPLP 358

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A       GID     + +  +  VPGR E V          VDYAH ++
Sbjct: 359 GSFNVANTLAAVAALAVAGIDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 417

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +LK +R +T GR+ +V GCGGDRD  KR  MG     L+D A++T DNPRSEDP  
Sbjct: 418 AVESVLKALRKVTEGRLHIVLGCGGDRDTTKRAPMGAAMARLSDTAVLTSDNPRSEDPLA 477

Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G            +   +R  AI   +      D ++VAGKGHE    +  G 
Sbjct: 478 ILATMLEGAASVPAHERGEVLLFEDRAAAIAATVARARPGDTVLVAGKGHEQGQDIA-GV 536

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 537 VRPFDDRQVLREAI 550


>gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
 gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
          Length = 533

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 146/474 (30%), Positives = 220/474 (46%), Gaps = 18/474 (3%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++  ++ ++   +F A+ G++  G  +  QA+ +GA A++   A + +  + T   + 
Sbjct: 23  TGITLRAQDVRPHDLFAALPGSRAHGAGYAGQALERGAAAVLTDRAGA-ELLAGTDLGSV 81

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            +LVV+  R+ L   A +LYG       ++ VTGTSGK++    ++      G  S  IG
Sbjct: 82  ALLVVERPREHLGAIARQLYGDPSRRLAVVGVTGTSGKTTTCYLLEAALAADGSRSAVIG 141

Query: 149 PTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T        + LTTP    L   L+ +  +GV  V++E SSH L   R+ G +   G
Sbjct: 142 TVQTRIDGQITPSALTTPEAPDLQALLAVMVERGVGAVAMEVSSHALSLGRVSGTRFAVG 201

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL +DH+D+H   + YF AK  LF+             D  Y   +      A    
Sbjct: 202 AFTNLSQDHLDFHHDMEDYFRAKAMLFDGRAGAHVI---DVDTEYGARLAAEHPEALTVS 258

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G     + +  + A   +  V      +       +PG F V NA VA     A+G 
Sbjct: 259 DRPGAADWSVEMVTLAANGVQHVVLSGPGKRQVTLDLAIPGAFNVGNAAVALACVDALGR 318

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D     + L  + V PGR E V          VDYAH   ++  +L  I    +G +IVV
Sbjct: 319 DVQQAADALATVVV-PGRMERVDAGQ-DFLAVVDYAHKPGAVAAVLDAIGQGLAGPLIVV 376

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------GF 439
            G GGDRD GKRP+MG  +   AD+ IVTDDNPRSE P  IRA+++ G            
Sbjct: 377 LGAGGDRDTGKRPMMGAESAARADVLIVTDDNPRSERPADIRAQVLAGAAPVADRRPCQV 436

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +E G+R  AIR A+++      +V+AGKGHE    + +G      D D +R  L
Sbjct: 437 LEIGDRRAAIRRAVQLAGTGGAVVIAGKGHEQGQEI-DGVVHPFSDRDELRAAL 489


>gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1]
          Length = 496

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 152/490 (31%), Positives = 229/490 (46%), Gaps = 22/490 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
             +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+         + AY
Sbjct: 7   SKLFAHASRDPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADAL----ARGAAAVAY 62

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
             Q  +    ++ P++ V      LS  A R YG+     N++ VTGT+GK+SV   V Q
Sbjct: 63  EEQGANVLPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQ 122

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                G     IG   T      Q  RLTTP PI +   L+ L   G   V++E SSH L
Sbjct: 123 ALDLLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHAL 182

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q R+  ++      TNL RDH+DYH + +AY  AK +LF     +     +  DD + +
Sbjct: 183 EQGRVAALEFDIAVMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNL--DDDFGR 240

Query: 255 EVMKRAHNAGCRVLSVGY--------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            +                            +  ++     +  + TI     +      L
Sbjct: 241 RLAADFARRPSVDHIETRLLSYSLESPEASLFCREAVFSDDGVRATIVTAQGERILRSQL 300

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F + N L A    +A+      +L+   +L    GR + +G   +   + VDYAHT 
Sbjct: 301 LGRFNLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPL-VVVDYAHTP 359

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPR+EDP 
Sbjct: 360 DALEKVLEALRPHAHGKLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPL 419

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +I  +I  G            R EAI   I      DV+V+AGKGHE    + NGE+   
Sbjct: 420 RIFDDIRPGFTRPDDVEYVAGRGEAIAHLIATAAANDVIVLAGKGHEDYQEI-NGERHDF 478

Query: 484 VDCDIIREIL 493
            D     + L
Sbjct: 479 SDLTEAEKAL 488


>gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12D]
 gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D]
          Length = 514

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 158/482 (32%), Positives = 228/482 (47%), Gaps = 26/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V GN   + DG   IPQAI  GA A++         ++    
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAE----AHGYTMPAD 87

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +   IL VD   +     A++ YG        ++ VTGT+GK+S + ++ Q   + G   
Sbjct: 88  APVRILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147

Query: 145 FQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L+ L   G   +++E SSHGL+Q R+DG  
Sbjct: 148 AVVGTLGTGFVDGLAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTC 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257
                FTNL +DH+DYH T   Y  AK RLF         + ++  A +        ++ 
Sbjct: 208 FDIAVFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLQNARADIE 267

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +       +     +++    V A        +           P  G F V N L 
Sbjct: 268 TIEYGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLA 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G  +A G+     + HLEKL  V GR E  G    G  + VDYAHT ++LE  L+ + 
Sbjct: 328 VLGALLAAGVPWPDAIAHLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386

Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            IT    G +  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I  EI  
Sbjct: 387 PITEARGGNLWAVFGCGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILDEIAD 446

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+       +  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + +R 
Sbjct: 447 GMENPRAATQIEDRAAAILHAVRHADALDVIVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505

Query: 492 IL 493
            L
Sbjct: 506 AL 507


>gi|300702957|ref|YP_003744559.1| UDP-N-acetylmuramoylalanyl-d-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070620|emb|CBJ41915.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 514

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 156/482 (32%), Positives = 224/482 (46%), Gaps = 26/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V GN   + DG   IPQAI  GA A++         +     
Sbjct: 32  DLTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAE----AHGYVVPAD 87

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +   +L VD   +     A++ Y         ++ VTGT+GK+S + ++ Q   R G   
Sbjct: 88  APVRVLPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSCSQWIAQALSRQGERC 147

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L  L   G   V++E SSHGL+Q R DG +
Sbjct: 148 AVVGTLGTGFVDTLVATGFTTPDAIQLQRSLVDLHRAGARAVAMEVSSHGLEQGRADGTR 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257
                FTNL +DH+DYH T   Y  AK RLF         + ++  A +        ++ 
Sbjct: 208 FDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLTGLRADIE 267

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +       +      ++    V A        I           P+ G F V N L 
Sbjct: 268 AVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDIDGSFGRATVHSPMVGLFNVSNQLG 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G+ +  G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L  + 
Sbjct: 328 VLGVLLMAGVSWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLCALA 386

Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP++I   I  
Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERLAQHVVLTSDNPRSEDPQQILDMIAD 446

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+      ++  +R  AI  A+   +  DV+VVAGKGHE+      G K+   D + +R 
Sbjct: 447 GMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGKGHESTQETA-GRKRPFSDQEHVRL 505

Query: 492 IL 493
            L
Sbjct: 506 AL 507


>gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
 gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
          Length = 491

 Score =  281 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 155/476 (32%), Positives = 231/476 (48%), Gaps = 15/476 (3%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L     +     I  +  DSR ++ G +F+A+ G+ +DG  F+ QA A GA A +V    
Sbjct: 16  LEGLAAEVPALDIAALRLDSRQVEKGDLFIALRGHAQDGREFLAQAAASGAAAALVEDEL 75

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQ 135
            L+          P++V+ N R  L   A R + +    +   AVTGT+GK++V+    +
Sbjct: 76  PLRLSP------LPMVVIPNLRHRLCEIAGRFFREPSREMHIAAVTGTNGKTTVSQLFAR 129

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +  G     IG           +   TTP  I L + L+  + Q V  VS+E SSH L
Sbjct: 130 LVRSVGYDCGVIGTLGASLDGGVHSSVHTTPDSIALQEILAGWAGQAVPFVSMEVSSHAL 189

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q R++ + +    FTNL RDH+DYH   Q+Y  AK RLF         AI+ ADD +S+
Sbjct: 190 HQGRVNTLDIDTAIFTNLTRDHLDYHGDMQSYGEAKARLFAF--ESLRTAILNADDPFSR 247

Query: 255 EVMKRAHN-AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            + +R           +      + L  +       +        +     PL G+F   
Sbjct: 248 HLAQRVPTGVSVLRYGIEDSTAEVRLSHLKLSRAGLRFRFESPWGEATLTCPLLGKFNAV 307

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A    +  G+    V+E +E L  VPGR E +     G  + +DYAHT ++L  +L
Sbjct: 308 NLLAALTAALQAGLPFKAVMEAVESLASVPGRMEPLRVAG-GPLVVIDYAHTPDALRQVL 366

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R    G +I VFGCGGDRD+GKRP+M +     AD A++T DNPRSE+P  I A+I 
Sbjct: 367 LTLREQCQGSLIAVFGCGGDRDRGKRPLMAEAVSATADRAVITSDNPRSEEPLAIIADIQ 426

Query: 434 HGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             +   ++   +R EAIR AIE    +D +++AGKGHE   IV   E+    D  +
Sbjct: 427 ASMKGDYLVCADRAEAIRLAIESAGAKDCVLIAGKGHEDYQIVG-QERLPFSDTAV 481


>gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
 gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
          Length = 544

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 151/501 (30%), Positives = 239/501 (47%), Gaps = 26/501 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRH--IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +  + +   Q  E  +  V  D R   I    +F A+ G +  G  F   A+ +GA AI+
Sbjct: 37  LEWVGLPGSQSSEVVVKGV--DLRAQGIVTDDLFAALPGARTHGAQFAVDALGRGATAIL 94

Query: 73  VSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
              A      +A    +   P+LV  N R  L   ++ +YG+  E +  + +TGTSGK++
Sbjct: 95  TDEAGLELIEAADKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTT 154

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  ++     +G     +G   T        + LTTP    L    + ++ QG+  V +
Sbjct: 155 TSYLLEAAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVM 214

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
           E SSH L   R+DGI+   G+FTNL +DH+D+H+  + YF AK RLF+     +   A++
Sbjct: 215 EVSSHALALGRVDGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVV 274

Query: 247 YADDAYSKEVMK-----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             DD + + + +      +        S       +   +V    ++    +  +G+ + 
Sbjct: 275 CVDDVWGRRMAELAATDESDAVTTVSTSTAEAEWTVGAVEVAEDGSQTFELVGPDGQSWP 334

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG + V NA +A  +  A G+D    +  L  + V PGR + +          VD
Sbjct: 335 VSLRLPGRYNVANAALALTVSFAAGLDPDAAVRALGTVDV-PGRVQRIDRGQS-FLAVVD 392

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH   +LE ++  +R    GR+ VV G GGDRD GKR +MG+     AD+ IVTDDNPR
Sbjct: 393 YAHKPAALEAVIATLRNQVPGRVAVVVGAGGDRDAGKRALMGEAGARGADLLIVTDDNPR 452

Query: 422 SEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +EDP KIRA ++ G             E G+R  AI  A+      DV++VAGKGHE   
Sbjct: 453 TEDPAKIRASVMQGAMDVPESERGEVREVGDRAAAIEQAVRWAQPGDVVLVAGKGHEVGQ 512

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            + +G K    D +++ E++G
Sbjct: 513 EI-DGVKHPFDDREVLGEMIG 532


>gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M12]
 gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Xylella fastidiosa M12]
          Length = 491

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 148/488 (30%), Positives = 217/488 (44%), Gaps = 12/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+  
Sbjct: 3   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                             + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 63  PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q   R G+ S   G               TTP  + L + L  L   G   V++E SS
Sbjct: 118 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF     + +   +     
Sbjct: 178 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDLFG 237

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                          V   G+    +  + +          + +         PL G F 
Sbjct: 238 LRLLHGLAKGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFN 297

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L  
Sbjct: 298 VDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDALGQ 357

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED + I A+
Sbjct: 358 VLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVAD 417

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ G         + +R  AI  A+ + + +DV+++AGKGHE    V  G +    D ++
Sbjct: 418 ILAGFVRPNLVKVQRDRSAAIAAAVGIASAEDVVLIAGKGHERYQEVA-GVRHPFDDTEV 476

Query: 489 IREILGLI 496
              +L  +
Sbjct: 477 AMRVLAAM 484


>gi|227872144|ref|ZP_03990514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
 gi|227842002|gb|EEJ52262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
          Length = 495

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 133/484 (27%), Positives = 213/484 (44%), Gaps = 10/484 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +++  +        + + +S DSR  +AG +F+ + G+  D H  IP+ + +G    VV 
Sbjct: 8   LSEAKVLRGDGEREEFSSLSYDSRRAKAGDLFLCMKGSTMDSHDKIPELLEKGVRVFVVE 67

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV--ASF 132
                       R +  I+ V+N RK L+  ++  +    + +L +  T  K     AS 
Sbjct: 68  KNLPDLPKEMQDREDLCIVQVENGRKALAELSAFYFSYPSKEMLMIGITGTKGKTTTASM 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V+ I   +G +   IG T    +   +  R TTP    L +    +  +G   V +EASS
Sbjct: 128 VRAILTEAGYNCGLIGTTGIDYAGIHEESRNTTPESYTLQETFRKMKEKGCNAVVMEASS 187

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G   HR DGI    G FTN+  DHI  ++ +        +       K     + AD +
Sbjct: 188 QGFKMHRTDGILFDYGIFTNIEEDHIGENEHKDFAEYKYYKSRIFTQSKTGLVNLDADFS 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                          +                      +       +D++    LPG + 
Sbjct: 248 EEFMENAECPCFSFALKKQADFMATEIEDLHRHDFLGCRFHFRHGEEDWEIWNHLPGRYN 307

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYNAL A  L   +GI   +V   L K+ V  GR E V     G  + VDYAH +  ++ 
Sbjct: 308 VYNALAAISLASLLGIKKEVVQSALRKIQV-NGRMEVVLQRG-GYTVLVDYAHNAMGMKN 365

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+ ++     R+IVVFGCGG+R + +R  MG++A ++AD  I+T DN R E    I ++
Sbjct: 366 LLETLKAYKPKRLIVVFGCGGNRAKERRYGMGEVAGEMADFTILTADNSRYEKTMDIISD 425

Query: 432 II----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           I          +++  +R EAIR A+E   + D++ V GKGHE  + V NG     VD +
Sbjct: 426 IESTLSKKTKNYVKIEDRREAIRYALEQAEEGDLIAVIGKGHEEYNEV-NGTFTRFVDRE 484

Query: 488 IIRE 491
           +I E
Sbjct: 485 VILE 488


>gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Azotobacter vinelandii DJ]
 gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii
           DJ]
          Length = 487

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 150/470 (31%), Positives = 230/470 (48%), Gaps = 14/470 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I E++ DSR ++ G +F+A+ G ++DG   IP A+         + AY      +     
Sbjct: 18  IRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDAL----ARGAAAVAYEAAGAPSFADGG 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++ +      LS  A R YG+      ++ VTGT+GK+SV+  + Q     G     I
Sbjct: 74  VPLVPIKGLAGQLSAIAGRFYGEPSRALCLVGVTGTNGKTSVSQLLAQALDLLGERCGII 133

Query: 148 GPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G          Q  R TTP PI +  AL+ L   G   VS+E SSH L Q R+  +    
Sbjct: 134 GTLGNGFHGALQSGRHTTPDPISVQAALAGLKQAGARAVSMEVSSHALAQGRVSALDFDV 193

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH +  AY  AK RLF     +     +  DD + + +   A+ +   
Sbjct: 194 AIFTNLSRDHLDYHGSMDAYGAAKARLFAWPGLRCRVLNL--DDPFGRLLAGEANASRLI 251

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S+  +   +H ++        +  ++    +     PL G F + N L   G  + + 
Sbjct: 252 GYSLESRSAQVHCRRAHFDEQGVRAEVATPQGEGLLHSPLLGRFNLSNLLAVVGALLGLD 311

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                +L  + +L    GR + +G  ++   + VDYAHT ++LE +L+ +R    GR++ 
Sbjct: 312 YALDEILRVVPQLQAPAGRMQRLGGGAKPL-VVVDYAHTPDALEKVLEALRPHVRGRLLC 370

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443
           +FGCGGDRD+GKRP+M  +A  LAD  ++TDDNPRSE PE+I A+I  GI          
Sbjct: 371 LFGCGGDRDRGKRPLMAAVAERLADALLITDDNPRSESPEQIFADIRSGIGVPEKVTCLH 430

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            R +AI   I   +  DVL++AGKGHE    + NG ++   D +   + L
Sbjct: 431 GRGQAIARLIAGADASDVLLLAGKGHEDYQEI-NGVRQPFSDIEEAAKAL 479


>gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M23]
 gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23]
 gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 491

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 216/488 (44%), Gaps = 12/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+  
Sbjct: 3   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                             + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 63  PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 117

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q   R G+ S   G               TTP  + L + L  L   G   V++E SS
Sbjct: 118 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF     + +   +     
Sbjct: 178 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAVINVDDLFG 237

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                          V   G+    +  + +          + +         PL G F 
Sbjct: 238 LRLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFN 297

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L  
Sbjct: 298 VDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDALGQ 357

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED + I A+
Sbjct: 358 VLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVAD 417

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ G         + +R  AI  AI + +  DV+++AGKGHE    V  G +    D ++
Sbjct: 418 ILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDDTEV 476

Query: 489 IREILGLI 496
              +L  +
Sbjct: 477 AMRVLAAM 484


>gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12J]
 gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J]
          Length = 514

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 157/482 (32%), Positives = 228/482 (47%), Gaps = 26/482 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++SD+R ++ G +FVA V GN   + DG   IPQAI  GA A++         ++    
Sbjct: 32  DLTSDTRKLKTGDVFVAYVLGNARQRGDGRPHIPQAIEAGASAVLAE----AHGYAMPAD 87

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +   IL VD   +     A++ YG        ++ VTGT+GK+S + ++ Q   + G   
Sbjct: 88  APVRILPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERC 147

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T           TTP  I L ++L+ L   G   +++E SSHGL+Q R+DG +
Sbjct: 148 AVVGTLGTGFVDALATTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTR 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------LPKESPAIIYADDAYSKEVM 257
                FTNL +DH+DYH T   Y  AK RLF         + ++  A +        +V 
Sbjct: 208 FDIAVFTNLTQDHLDYHGTMAEYELAKARLFGWQGLRAAVINRDDAAGVRLLQNARADVE 267

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +       +     +++    V A        +              G F V N L 
Sbjct: 268 TIEYGIDGDAAAQHGARQWLRATNVRAHRTGTTFDVDGSFGRATVHVSTVGLFNVSNLLA 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             G  +A G+     +  LEKL  V GR E  G    G  + VDYAHT ++LE  L+ + 
Sbjct: 328 VLGALLAAGVSWQDAIARLEKLQPVSGRMERFG-GEDGPLVVVDYAHTPDALEQTLRALA 386

Query: 378 TITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            IT    G++  VFGCGGDRD GKRP MG IA  LA   ++T DNPRSEDP+ I  EI  
Sbjct: 387 PITEARGGKLWAVFGCGGDRDPGKRPQMGSIAERLAPHVVLTSDNPRSEDPQHILDEIAD 446

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+       +  +R  AI  A+   +  DV+VVAGKGHE+   +  G K+   D + +R 
Sbjct: 447 GMDNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKGHESTQEIA-GRKRPFSDQEHVRL 505

Query: 492 IL 493
            L
Sbjct: 506 AL 507


>gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
 gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
          Length = 495

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 216/488 (44%), Gaps = 12/488 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+ G    G  FI  A A+GA AI+  
Sbjct: 7   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                             + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 67  PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           + Q   R G+ S   G               TTP  + L + L  L   G   V++E SS
Sbjct: 122 LAQAWHRLGVRSATCGTLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVSS 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF     + +   +     
Sbjct: 182 HALDQGRVDGVHYDVAVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAVINVDDLFG 241

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                          V   G+    +  + +          + +         PL G F 
Sbjct: 242 LRLLHGLANGVRRVGVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFN 301

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L  
Sbjct: 302 VDNLLTVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPVVVVDYAHTPDALGQ 361

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED + I A+
Sbjct: 362 VLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVAD 421

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I+ G         + +R  AI  AI + +  DV+++AGKGHE    V  G +    D ++
Sbjct: 422 ILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDDTEV 480

Query: 489 IREILGLI 496
              +L  +
Sbjct: 481 AMRVLAAM 488


>gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 143/473 (30%), Positives = 216/473 (45%), Gaps = 25/473 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +  DSR + +   FVA+ G   DGHLFI +A+  GA AIV  S  ++      +   
Sbjct: 27  FDRLVIDSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAVAGPDIAL--- 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                V ++R+ L+  AS +         + AVTGT+GK++VA+ V  +   +   S  I
Sbjct: 84  -----VKDSRRALAELASLMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKSGFI 138

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G T     +   +   TTPS + + + L  + + G +H S+E SSH +DQ R+    +  
Sbjct: 139 GTTGYRDGTHFYEAVRTTPSTVRVYELLGQMLASGCSHCSMELSSHAIDQDRIRMRDVDV 198

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH T + YF AK +LF+E LP  + A++  DD   K +      +   
Sbjct: 199 ALFTNLTRDHLDYHSTFELYFAAKKKLFDE-LPDGAVAVVNVDDPRGKGIAADTTGSVIT 257

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S  +      ++          +TI    + F                 +  L ++  
Sbjct: 258 FGSDDHSDVSFSIEGNELSGL--DLTIDGHRRRFQLAGTYNASNLAAAYAASRALGLSAL 315

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRI 384
                +         V GRFE +     G  + VDYAHT ++L+ +L+           +
Sbjct: 316 ESIDALSSS----PPVEGRFERMQFEG-GTMVIVDYAHTPDALKNVLEATLESMRPGSTL 370

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIE 441
             +FGCGGDRD GKR  MG IA  LA   IVT DNPR+EDP+ I  +I  G+        
Sbjct: 371 WCIFGCGGDRDPGKRAQMGAIAERLAHKVIVTSDNPRTEDPKLILDDIRQGLLKPEDAFW 430

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + +R +AI  A   +   D LV+AGKGHET  ++         D +  R    
Sbjct: 431 EIDRRDAISRAAASMVSGDTLVLAGKGHETYQVIGT-TNIHFDDREEARLAFS 482


>gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 492

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 138/482 (28%), Positives = 226/482 (46%), Gaps = 18/482 (3%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++  P ++ +  I   ++D+R ++ G +F AI G    G  +   A+A GA A++  +  
Sbjct: 16  IASCPAEYADVAITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAVAVITDTDG 75

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQ 135
           +       + ++ P++++ +  + +   A+ +YG   +     AVTGT+GK++ A  +  
Sbjct: 76  AD-----FVTADVPVIILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAFMIDH 130

Query: 136 ICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I    G ++  IG  +  I+      +LTTP P  L   L+ L  +G T + +E SSH +
Sbjct: 131 ILNTLGETTGLIGTVAVKIAGQEIPAQLTTPQPADLQAMLAALVERGGTSLVMEVSSHAI 190

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q R++ I      FTNL +DH+DYH T   YF AK  LF E   +   AI      + +
Sbjct: 191 AQGRIESINYSVAGFTNLTQDHLDYHNTLTEYFEAKALLFTEKFSRVGVAITDT--PWGE 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++KR +     + S   Q                +            L           
Sbjct: 249 ELVKRGNERVAALASQPDQPAGWRFTGQADGTLTLRGENWGTITTSTNLPGDFNIANAAL 308

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           A+             +  L     ++   PGR E V    R   I VD+AH  ++L   +
Sbjct: 309 AIAMVAKAGYSAEAISAALLASNGVNPQVPGRMEVVAEAPR---IVVDFAHNEDALTKAI 365

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +R  T G +IV+ G  GDRD  KRP+M K   + AD+ ++TDD+P SEDP  IRA++I
Sbjct: 366 EALRPSTQGNLIVITGSAGDRDVTKRPLMAKTVAERADVLVITDDDPHSEDPAHIRADLI 425

Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            GIP    +IE  +R EAI   +     +D +++AG+GHET+  + NG      D ++ R
Sbjct: 426 AGIPTDTNWIEIADRREAITAMVTDACAEDTILIAGRGHETIQDM-NGTLVNLDDREVAR 484

Query: 491 EI 492
           E 
Sbjct: 485 EA 486


>gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 494

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 132/477 (27%), Positives = 215/477 (45%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++N++++DSR  +AG IFVA  G   D H F    + QG + +VV+ A  LQ      
Sbjct: 20  DIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQGCQIVVVNRALELQG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  S     LYG   +    + VTGT+GK+S+A+ +  I ++ G  S
Sbjct: 75  --DVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSIATMIHHIYRKLGKGS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLEVSSHGLSLGRLSGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        + L ++   II ADD +S  +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVIINADDPFSTYLKSVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                       Q        +                 +    P  G F + N + A  
Sbjct: 253 PYESLTYGI--EQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYIGRFNIANLMAAML 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G     V + +  L  V GR E +  +     + +DYAHT++ +  ++  +    
Sbjct: 311 GVWVKGAPLETVTKVVADLEPVEGRLEVLDPS-LPIDLIIDYAHTADGMAKLIDAVEPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVASR-ADYVIFTPDNPANDDPKMLTAELAKGATHDR 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           ++E  +R E IR AIE+    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YVEFTDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIGL 480


>gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
 gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
          Length = 499

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 139/499 (27%), Positives = 230/499 (46%), Gaps = 16/499 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+ L+  +    + +         + +I  ++++S  +Q G++F+ + G + DG  F  
Sbjct: 5   KLRTLLA-ELSTHLWETPPTDHPALDAEITGLTTNSWAVQPGYLFIGMPGTRVDGGSFWK 63

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            AI  GA A +VS      D          +L + +  +  +  A+  Y +  + +  + 
Sbjct: 64  SAIEAGAAAALVSDQVDRADVGTH-----CVLALKDMPRACAEVAATFYDQPSQKLKLVG 118

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT+GK++    ++ +   +   +   G   +           TTP  + L + LS   
Sbjct: 119 MTGTNGKTTTTHLIEYLLTTAQAPTALFGTLYARWPGHQVTAAHTTPFAVDLQQQLSDAV 178

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +       +E SSH L Q R+ G +     F+NL +DH+DYHQ  + YF AK  LF    
Sbjct: 179 AAQCQFGVMEVSSHALAQKRVLGCQFTVAVFSNLTQDHLDYHQDMEDYFAAKALLFSPDY 238

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +    I    D    + +                   ++   +       +  +     
Sbjct: 239 LQGRAII--NIDDVYGQRLVDQIGPNQCWTYSIEGPADLYTSGLSYETAGVKGQLHTPKG 296

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGR 357
             +F   L G+F V N L A G  + +G+    +   L +   VPGR + +  +  +   
Sbjct: 297 TVEFFSSLVGQFNVSNLLAAVGAVLELGLTLEQITPALAQFPGVPGRMQQITYSADQDIS 356

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +SLE +LK  R    G++  VFGCGGDRD+ KRP+MG+IA  L+D AIVT 
Sbjct: 357 VIVDYAHTPDSLENLLKAARPFVKGQMACVFGCGGDRDRTKRPLMGEIAARLSDQAIVTS 416

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP++I  +++ GIP     I + +R  AI+ AI      D +++AGKGHE   I
Sbjct: 417 DNPRTEDPQQILQDVLAGIPMEVKPIVEVDRRVAIQAAIAQAKPGDTILIAGKGHEDYQI 476

Query: 475 VTNGEKKMSVDCDIIREIL 493
           +   EK    D +  +  L
Sbjct: 477 LGT-EKIHFDDREEAQAAL 494


>gi|261368781|ref|ZP_05981664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282569127|gb|EFB74662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 486

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 142/500 (28%), Positives = 204/500 (40%), Gaps = 28/500 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+            I      + +I  ++ DSR    G +FV +VG   DGH F 
Sbjct: 1   MKLNELVR----------HIDHTGASDAEITAITYDSRKAGPGALFVCLVGAWMDGHTFA 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A  QG  A +V            + ++   +V  +TR  L++  +  YG   E  +I+
Sbjct: 51  RSAYDQGCRAFLVEHTLD-------LPADVAQIVTQDTRAALAVIGADFYGNPAEQLHII 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYL 177
            +TGT GK++ A     I   +GLS   IG      +   +    TTP  + L +    +
Sbjct: 104 GITGTKGKTTTALLTSAILTEAGLSCAYIGSNGVNIAGTHEATANTTPESLELHRLFRKM 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V HV +E SS  L  HR+DGI     +FTNL  DHI   +          +     
Sbjct: 164 LDANVHHVVLEVSSQALRHHRVDGIPFEVVAFTNLSEDHIGPGEHPDFEDYKAAKRRLFA 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--LKKVCAIHNKQQVTISV 295
                  +  ADDA S  +                         +           T   
Sbjct: 224 EYNARVMVYNADDAVSDYMRAGFAGQQVSFGIGHDADYRAVDLAQYRSETALGIDFTCEH 283

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G+        PG F   +AL A  LC A G+      + L     V GRFE V     G
Sbjct: 284 GGEATPVRVMSPGAFSASDALCAIALCGAFGVTPDQAAKTLAH-TPVEGRFEVV-EGLPG 341

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               VDY+H   +L   LK +R     R+I VFG  G R Q +R  + + A   AD +I+
Sbjct: 342 RTFIVDYSHNGLALTSALKTLRAYQPRRLICVFGSVGGRTQVRRRELAEAASAWADYSIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNP  EDP  I  +I   +     +    +R EAIR A+ M    D+++ AGKGHE  
Sbjct: 402 TSDNPDFEDPMNILRDIDACMAPDALYALIPDRAEAIRQAVAMAEPGDIVLFAGKGHEDY 461

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            ++  G+K   V+ D+IRE 
Sbjct: 462 QLIQ-GKKVPFVERDLIREA 480


>gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 514

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 145/514 (28%), Positives = 224/514 (43%), Gaps = 38/514 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K F EL+  ++          I+ V+ DSR +  G +FVAI G   DGH +I  A+ QGA
Sbjct: 2   KSFAELLLHVTHQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A+V        D      +  P  +V + +  LS  A+  Y  +P   L V G +G   
Sbjct: 62  VAVVYD------DPHQAPPATIPSALVADAKVALSPIAAAFYD-YPAQQLEVVGITGSKG 114

Query: 129 VASFVQQICQRSGLSSFQIGPTST------ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
             +           S   +G  ST         +A   R +TP  + +   L  +   G 
Sbjct: 115 KTTTTFLTAAALEASGELVGFMSTVDFKIGQRQWANKTRQSTPEALEIQAMLREMVEAGC 174

Query: 183 THVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE----- 235
            +  VE++SHGL    +RL          TN+  +H+DYH T + Y   K +LF+     
Sbjct: 175 RYAVVESTSHGLSPRWNRLGDCAYDVALITNVTHEHLDYHGTVEQYRADKAQLFQLLATS 234

Query: 236 --------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                   +  P E  AI+ ADD ++ +    A      +    +    +   ++ +   
Sbjct: 235 PSQKSILGQPTPVEKVAIVNADDPHAAQFRAAAGEQVRHLSYAIHAEADLRATEIVSTSK 294

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             + T      +F     L G F VYN L A  +C+A G+D A  ++ LE +  + GR E
Sbjct: 295 GLRFTAITPQGNFALNLQLVGTFYVYNVLAALSVCLARGVDLAAAIQRLEAIPGINGRME 354

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V    +   + VDYAH  +S E ++  +R +T GR+I VFG  G+RD  KRPI G+IA 
Sbjct: 355 QV-ELGQPFSVLVDYAHNPDSFEQVMSMLRPLTQGRLIAVFGSAGERDLAKRPIQGQIAA 413

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQ 459
              D+  +TD++PR+ED  +I  EI  G                +R  AI  A+      
Sbjct: 414 KWCDLLYLTDEDPRAEDSLQILQEIAAGAKAEGKIIDQNCWLIPDRRTAIEQALATAQAG 473

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           DV+++ GKGHE   I  +G+ +   +       L
Sbjct: 474 DVVLLLGKGHEGNIIYASGDIEW-NEHAEAERAL 506


>gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Weiss]
 gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum MopnTet14]
 gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 483

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 147/504 (29%), Positives = 239/504 (47%), Gaps = 30/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR    G IF+A  G   +G+ + 
Sbjct: 1   MHLDQLLRDIPAKIYGKVESIP-------VRNLTRDSRCTGVGDIFIARQGQMCNGNDYS 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+  GA AI+ S              +   +V ++     +  A+R Y    +   ++
Sbjct: 54  GQAVENGAIAILSS--------LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V++  +++ +  G  +  +G    I       +  TTP  I L K  + +
Sbjct: 106 GVTGTNGKTTVSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   VE SS GL   R+   + +AG  TN+  DH+D+H + + Y  AK +LF   
Sbjct: 166 VKQNLSSAVVEVSSIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVS- 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP+   A++ +D  Y++  ++ +   G                 +          I  +G
Sbjct: 225 LPEHGVAVVNSDCEYAQSFLEISPARGVSYAVHQEADY--RAVNLKFSSLGSTFDILYQG 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             F     L GE  VYN L A  +   I G D A ++ ++  L    GR E     S   
Sbjct: 283 NVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLE--PVLSGPC 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            IY+DYAHT ++L+ + K +  +    GR+I+VFGCGGDRD  KRPIM K+A      ++
Sbjct: 341 PIYIDYAHTPDALDNVCKILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVAETYG-FSV 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M   +D+++VAGKGHE  
Sbjct: 400 VTSDNPRTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEVY 459

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I  +       D +++ E L  I
Sbjct: 460 QIFKHQTIV-FDDREVVCEALASI 482


>gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
          Length = 486

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 147/504 (29%), Positives = 239/504 (47%), Gaps = 30/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+     ++  ++   P       +  ++ DSR    G IF+A  G   +G+ + 
Sbjct: 4   MHLDQLLRDIPAKIYGKVESIP-------VRNLTRDSRCTGVGDIFIARQGQMCNGNDYS 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+  GA AI+ S              +   +V ++     +  A+R Y    +   ++
Sbjct: 57  GQAVENGAIAILSS--------LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V++  +++ +  G  +  +G    I       +  TTP  I L K  + +
Sbjct: 109 GVTGTNGKTTVSALARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEM 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q ++   VE SS GL   R+   + +AG  TN+  DH+D+H + + Y  AK +LF   
Sbjct: 169 VKQNLSSAVVEVSSIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVS- 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP+   A++ +D  Y++  ++ +   G                 +          I  +G
Sbjct: 228 LPEHGVAVVNSDCEYAQSFLEISPARGVSYAVHQEADY--RAVNLKFSSLGSTFDILYQG 285

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             F     L GE  VYN L A  +   I G D A ++ ++  L    GR E     S   
Sbjct: 286 NVFSCETSLVGEHNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLE--PVLSGPC 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            IY+DYAHT ++L+ + K +  +    GR+I+VFGCGGDRD  KRPIM K+A      ++
Sbjct: 344 PIYIDYAHTPDALDNVCKILSQLLPADGRLIIVFGCGGDRDHSKRPIMAKVAETYG-FSV 402

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           VT DNPR+EDP++I A+I  G     ++ + +R  AI  AI M   +D+++VAGKGHE  
Sbjct: 403 VTSDNPRTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKGHEVY 462

Query: 473 HIVTNGEKKMSVDCDIIREILGLI 496
            I  +       D +++ E L  I
Sbjct: 463 QIFKHQTIV-FDDREVVCEALASI 485


>gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces bingchenggensis BCW-1]
          Length = 544

 Score =  280 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 151/511 (29%), Positives = 234/511 (45%), Gaps = 32/511 (6%)

Query: 11  FPELINQLSIFPMQWRERK-------INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
             EL +QL I   +  +         +  ++ DSR ++ G ++ A+ G +  G  F  QA
Sbjct: 35  LRELADQLGIDAPKAPDAPKAPEEAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQA 94

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVT 121
              GA A++     + +       +  P+LVV+N R  +   A+ +YG+   +   + +T
Sbjct: 95  ADLGAVAVLTDPGGADR----AAATGLPVLVVENPRGRMGALAATIYGEPGRDLLQIGIT 150

Query: 122 GTSGKSSVASFVQQICQR-----SGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALS 175
           GTSGK++ A  V+   +       G  +  IG   S I      +  TTP    L    +
Sbjct: 151 GTSGKTTTAYLVEGGLKAAAAKGDGSLTGLIGTVESRIGDERIKSERTTPEATDLQALFA 210

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  +GV  +++E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF 
Sbjct: 211 VMRERGVGSLAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSDMEDYFQAKAQLFT 270

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +   +   A+I  DD Y K ++  +        + G+         V       + TI  
Sbjct: 271 K--ARSRAAVINLDDEYGKRLVDLSEVPVTTFSAEGHPDAHWRAADVTVGPLGSEFTILG 328

Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +      PLPG F V N L A       GID     + +  +  VPGR E V     
Sbjct: 329 PNGESVTAAAPLPGAFNVANTLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDAGQ- 387

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VDYAH ++++E +L+ +R +T GR+  V GCGGDRDQ KR  MG      AD A+
Sbjct: 388 PYLAVVDYAHKTDAVESVLRALRKVTEGRLHAVLGCGGDRDQQKRGPMGAAVARYADTAV 447

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR------IEAIRTAIEMLNKQDVLVVAG 466
           +T DNPRSEDP  I A ++ G       E+G+        +AI  A+      D ++VAG
Sbjct: 448 LTSDNPRSEDPLAILATMLAGAAEVPAHERGDVLVDADRAQAIAAAVARAEPGDTVLVAG 507

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           KGHE    +  G  +   D  ++RE + L +
Sbjct: 508 KGHELGQDIA-GVVRPFDDRQVLREAIELAI 537


>gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
 gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
          Length = 494

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 155/471 (32%), Positives = 232/471 (49%), Gaps = 14/471 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ + +DSR ++ G  FVA+ G       +I  AI  GA  I++ S    Q    + RS 
Sbjct: 24  IHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGASVILLESE---QAGECSERSG 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             I+ V   +  L   A R +    + +  + VTGT+GK+SV  ++ Q+ Q +G     +
Sbjct: 81  ALIVPVPELKVRLGKLADRFFEYPSQRLQLVGVTGTNGKTSVTQYIAQLLQAAGTPCGVL 140

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +    Q    TTP  +   + L+ + + G    ++E SSH LDQ R+D + L A
Sbjct: 141 GTLGYGMPETLQPATHTTPDVVQANRVLAGILASGGRAAAMEVSSHALDQGRIDRLTLTA 200

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+DYH +  AY  AK +LF     +    +I  DD + +++  +      R
Sbjct: 201 AVFTNLTRDHLDYHGSMAAYGEAKAKLFSR--EELRFVVINVDDPFGRKLYHQLEGKCDR 258

Query: 267 VLSV-GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +          + LK+ CA+ N  +  +     +F    PL G F   N L A    +A+
Sbjct: 259 LRFSLHEPQAELWLKEFCALDNGFRAVLDGRWGEFTIEAPLMGRFNASNVLAAVATVMAL 318

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D   V   + +L    GR +       G R  VDYAHT ++L   L  +R   SGR+I
Sbjct: 319 GVDVTQVQHGVRRLVPPAGRLQVFTAGD-GARAVVDYAHTPDALNNALAALRPHVSGRLI 377

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFGCGGDRD GKRP M + A + AD+ IVTDDNPR+E P  I A+I+ G          
Sbjct: 378 CVFGCGGDRDSGKRPEMAQQAENGADLVIVTDDNPRTETPSAITADIMAGFIAPEKIQLI 437

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R +AI  A+ +    D+++VAGKGHE    +  G K    D + + + L
Sbjct: 438 HSRAQAIAAALALAGPDDLVLVAGKGHEDYQDIA-GCKYPFSDSEQVTQAL 487


>gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
 gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
          Length = 493

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 143/501 (28%), Positives = 231/501 (46%), Gaps = 29/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +   +++           + +I E+++DSR + AG +FV I G   DGH F+
Sbjct: 2   MKLTKLLERLEYKVVQGND-------DIEITELTNDSRRVCAGSVFVCISGAVVDGHEFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            + + +GA+A++V       +       +  ++ V++TR  L+L ++  +G   E   ++
Sbjct: 55  KEVLEKGAKAVIVEKEVKAPE-------HVTVIKVEDTRYALALASAAYFGYPAEQLKVI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    V+ I +  G     IG   + I       + TTP    + +    +
Sbjct: 108 GITGTKGKTTTTYMVKSILEGVGHKVGLIGTIEAIIGDEVIPAKNTTPESFTIHQYFRKM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  GI    G FTNLG DHI      +       +  + L
Sbjct: 168 VDAGCDAVVMEVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGP---NEHKDFEDYKRCKGL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISV 295
           L K+    I   D    E + R             +          V             
Sbjct: 225 LFKQCRIGIANVDDPYFEDVFRGATCQIETFGFAQKADLRAADTKLVSRPGYLGVSYHVS 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              DFD    +PG F VYN+L A  +C    +    +++   K+  V GR E V  +   
Sbjct: 285 GLMDFDVEIDIPGTFSVYNSLTAIAVCRHFDVPVE-MIKKALKVAKVKGRIEMVKVSE-D 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+
Sbjct: 343 FTLMIDYAHNAMSLESLLTTLKEYHPKRLVCLFGCGGNRAKARRYEMGEVSGKLADLTII 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+P+ I  +I  GI      ++E  +R EAIR A++     DV+V+AGKGHE 
Sbjct: 403 TSDNPRFEEPQDIIDDIKIGIGKTDGKYVEICDRKEAIRYAVDHAEVGDVIVLAGKGHED 462

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
              +  G K    +  +I E+
Sbjct: 463 YQEIK-GVKYDMDERVLIAEV 482


>gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 147/485 (30%), Positives = 228/485 (47%), Gaps = 34/485 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++SDSR +  G +F A VG+  DG  +I  A+ +GA A+V  +A     F+   + + P 
Sbjct: 24  LTSDSRRVAPGDVFFAYVGD-ADGRSYIADAVERGAAAVVYEAAG----FTWPAQIDVPH 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQ--RSGLSSFQIG 148
           L V + +      A+  YG+  + +L  AVTGT+GK+S A ++           ++  IG
Sbjct: 79  LAVTDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSCAYWLGIALSRLAGASTAGVIG 138

Query: 149 PTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                S              TTP  + L ++L  L+   V  +++EASS GL Q R++G+
Sbjct: 139 TLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGRVGALAIEASSIGLAQGRMNGM 198

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +     TN  RDH+D+H   Q Y +AK +LF+    K   A++  DD   + ++     
Sbjct: 199 HVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKH--AVVNLDDDMGQRLLPLLAE 256

Query: 263 AGCRVLSVGYQGKFI---------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               V+      +              ++ + H      +            L G F V 
Sbjct: 257 RKVPVIGYAIADEQGGDPHGVPTLRASQLRSSHTGTVFHVDSPFGSGQVKTQLVGRFNVS 316

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L   G+ +  G+    V+     L   PGR +  G       I +DYAHT ++L+  L
Sbjct: 317 NVLGIMGVLLTQGVAWDAVVAAAAALSPAPGRMQQFGGPDVPL-IVIDYAHTPDALDKTL 375

Query: 374 KNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +R + + R   +  VFGCGGDRD GKRP MG+IA   AD  ++T DNPRSEDP+ I  
Sbjct: 376 STLRQLATQRGGQLWCVFGCGGDRDPGKRPQMGQIAEQ-ADQVVLTSDNPRSEDPQAIID 434

Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           +I  G+     +   +R  AI  AI    K DV+++AGKGHE+   +  G+K   +D D 
Sbjct: 435 QIRAGMSRVEPVVLPDRAGAILWAIRHATKADVVLLAGKGHESYQEIA-GKKLPFLDADH 493

Query: 489 IREIL 493
           +   L
Sbjct: 494 VALAL 498


>gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
          Length = 507

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 151/502 (30%), Positives = 230/502 (45%), Gaps = 23/502 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+ +   E  +   +   +     I+ V   S ++  G +F  + G K DGH F 
Sbjct: 1   MYLNDLLAR-LHEDPSSPKLLSPRGDNPWIDRVVHHSGNVAPGSLFACVSGGKADGHRFA 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A+ +GA A+ V  A  L      +            R+F+   A+ LYG+  +    +
Sbjct: 60  ASALDRGAVALCVERALDLPVPQVVVPDV---------RRFMGRLAAVLYGEPAQRLTHV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GKS+    ++ + Q +G+ +  +G           +   TTP    +   L+ +
Sbjct: 111 GITGTNGKSTTTYMLRSVLQSAGVKTGLLGTIVYHDGDKELEADRTTPENTDIQSFLARM 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S G     +E SSHGL+Q R++G +   G FTNL  +H+DYH T++AYF AK  LFEE 
Sbjct: 171 VSNGCGACVMETSSHGLEQGRIEGCRFDRGGFTNLSPEHLDYHGTEEAYFQAKKLLFEEY 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +          DDAY + +++       G              LK          +T+  
Sbjct: 231 MKPSWKGASNRDDAYGRRLLEAYPENLVGYTREEPRPGDLGATLKSFDLTGMCLDLTLPD 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +   PL G + V NAL  A L   + ID   +   L  +  VPGR E   +   G
Sbjct: 291 GRVLPEVHLPLIGTYNVENALACAALARTLDIDGETIRRGLASMPQVPGRLERY-SLPGG 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +DYAHT + LE +L  +R +  G++  VFG GG+R    R  +G+ A  LAD  +V
Sbjct: 350 VTCVIDYAHTPDGLEKVLSTLRHVCRGQLWSVFGHGGERTTSHRKALGEHAGRLADRVVV 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           T DNPRSEDP  I  +I+ GI G         + +R EAIR A++     DV++V+GKG 
Sbjct: 410 TMDNPRSEDPGAIAEQIVGGIQGSGAATPWEVRLDRGEAIRFALDGAQPGDVVLVSGKGP 469

Query: 470 ETVHIVTNGEKKMSVDCDIIRE 491
           E   I  +       D  ++ E
Sbjct: 470 ERNIIFAD-RLVPFEDRAVVLE 490


>gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
 gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
          Length = 454

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 227/464 (48%), Gaps = 26/464 (5%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR ++ G  F+AI     DGH +I QAIA GA  I+        +           ++
Sbjct: 7   TDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGATKIIAEHGNYSVET----------VI 56

Query: 95  VDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           V+NTRK+L+ +   +         ++ VTGT+GK++    + Q+          +G    
Sbjct: 57  VENTRKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGTVGF 116

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
              +  ++   TTP    L   L    + GV +  +E SSH L + R+ G++    +FTN
Sbjct: 117 YYGNIKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEVSSHALAKQRIYGLEFDEVAFTN 176

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH+T + Y NAK +LFE+    +   I   D  +   +++  +N         
Sbjct: 177 LTQDHLDYHKTLENYANAKRKLFEKTRNNKIAIINGDDIHHQHFMLEGNNNIVI------ 230

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              + + ++ V   H   +         +     + G + +YN L A  L   +G     
Sbjct: 231 --DRDVKIENVDFSHLGTEFDFRYLDNSYHVRLNMVGRYNIYNYLTALLLVNKLGFKIED 288

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L   EKL    GR E +  N+    I+VDYAHT +++E +LK+ +    G+II + GCG
Sbjct: 289 ILLLNEKLKAPAGRMELIKYNTNS--IFVDYAHTPDAVENVLKSAQEFKKGKIITIIGCG 346

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAI 449
           G+RD  KRPIMGKIA+D +D  I T DNPR E+PE I  +I   +    F     R +AI
Sbjct: 347 GNRDATKRPIMGKIAVDNSDYVIFTSDNPRKEEPEAILNDITANLISDNFEIIVERQDAI 406

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              ++ML++ D+L++ GKGHE      +G++    D + + + +
Sbjct: 407 YKGVKMLDENDILMILGKGHENYQETKDGKR-HFSDQEEVLKCI 449


>gi|17547568|ref|NP_520970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum GMI1000]
 gi|21362686|sp|Q8XVI2|MURE_RALSO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17429872|emb|CAD16556.1| probable udp-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide
           synthetase) (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 514

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 161/507 (31%), Positives = 229/507 (45%), Gaps = 31/507 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQ 62
           I      +++ L        +     ++SD+R ++ G +FVA V GN   + DG   IPQ
Sbjct: 12  IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119
           AI  G  A++  +   +    A  R    IL VD   +     A++ Y         ++ 
Sbjct: 67  AIEAGVSAVLAEAHGYVVPADAPAR----ILPVDGLSELAGPLAAQWYAVPGPDALRVIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S + ++ Q   R G     +G   T           TTP  I L  +L+ L 
Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLADLH 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL- 237
             G   V++E SSHGL+Q R DG +     FTNL +DH+DYH T   Y  AK RLF    
Sbjct: 183 RAGARAVAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPG 242

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                + ++  A           +    +       +    G ++    V A        
Sbjct: 243 LRAAVINRDDAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFD 302

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +           P+ G F V N L   G+ +  G+     L  LEKL  V GR E  G  
Sbjct: 303 VDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFG-G 361

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             G  + VDYAHT ++LE  L+ +  I     G++  VFGCGGDRD GKRP MG IA  L
Sbjct: 362 EDGPLVVVDYAHTPDALEQTLRALAPITGARGGKLWAVFGCGGDRDPGKRPQMGAIAERL 421

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   ++T DNPRSEDP+ I   I  G+      I+  +R  AI  A+   +  DV+VVAG
Sbjct: 422 AQHVVLTSDNPRSEDPQLILDMIADGMEDPRLAIQIEDRAAAILHAVRHADVHDVIVVAG 481

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE+   +  G K+   D + +R  L
Sbjct: 482 KGHESTQEIA-GRKRPFSDQEHVRLAL 507


>gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
 gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
          Length = 498

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 146/493 (29%), Positives = 211/493 (42%), Gaps = 23/493 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+               +   +  +  +  DSR ++ G  FVAI G    G  F+
Sbjct: 1   MLLSQLLPD-----------VALVGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFV 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA A GA AI+       +  +         + V   R  +   A + +G     +  +
Sbjct: 50  EQARAAGASAILFEPPAPAELPAPADA-----IAVPGLRARMGAMADQFHGAPSRAMAMV 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    + Q     G  S  IG          +    TTP  + +   L+ L
Sbjct: 105 GVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQL 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V++E SSH LDQ R+D +      FTNL RDH+DYH    +Y  AK RLF   
Sbjct: 165 RDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRP 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K +   +             A      + S G     +  + +          + ++G
Sbjct: 225 GLKAAVVNLDDAFGRQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDG 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PL G F V N L  AG   A G     + E L  L  + GR   +G       
Sbjct: 285 QRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPT 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L+  L ++     G +  VFGCGG+RD GKRP M  IA  LA+  IVTD
Sbjct: 345 VVVDYAHTPDALKQALDSLHGHLHGALFCVFGCGGERDTGKRPQMAAIAERLANQVIVTD 404

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR ED + I A+I+ G         + +R  AI  A++     D++++AGKGHE    
Sbjct: 405 DNPRGEDGDVIVADILAGFQNADAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHEPYQE 464

Query: 475 VTNGEKKMSVDCD 487
           V NG +    D +
Sbjct: 465 V-NGVRHDFDDTE 476


>gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
 gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
          Length = 521

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 231/504 (45%), Gaps = 25/504 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL      E        P       +  ++ DSR ++ G I+ A+ G +  G  F  Q
Sbjct: 17  LDDLAEALGVEPRGGRGPAPAD-----VTGITHDSRAVRPGDIYAALPGARFHGADFAAQ 71

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A + GA A +   A +       + +  P+LVV + R  +   A+R+YG   ++   + +
Sbjct: 72  AASLGAVAALTDPAGA----ERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGI 127

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ A  ++   + +G S+  IG     I      +  TTP    L    + +  
Sbjct: 128 TGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRE 187

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GV  V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     
Sbjct: 188 RGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARS 247

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
           +        DD Y + ++  A        + G+       + V         T+      
Sbjct: 248 RRGVVNH--DDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVEIGPTDSTFTVVGPDGS 305

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +    PLPG F V N L A       G D  +  E +  +  VPGR E V    +    
Sbjct: 306 RYPARAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV-DEGQPYLA 364

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T D
Sbjct: 365 VVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSD 424

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSEDP  I A ++ G       E+G+         AI   +      D +++AGKGHE
Sbjct: 425 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 484

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               V NG  +   D ++++E + 
Sbjct: 485 QGQDV-NGVVRPFDDREVLKEAIR 507


>gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 498

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 154/512 (30%), Positives = 236/512 (46%), Gaps = 38/512 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF- 59
           M+L+ L+                   +R +  ++ DSR I+ G++FVA+ G++  G  + 
Sbjct: 2   MRLRTLLQPWL---------DLTDADDRPVGGLAVDSRDIEPGFVFVALRGSRHHGLGYL 52

Query: 60  ------------IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
                          A            A    + +A  R+  P++ V +  + L   A+
Sbjct: 53  GDALAAGAGAVLWEPA---------GDVAPEPDERTAAERAGVPLIAVPDLGRRLGPIAA 103

Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTT 164
           RLYG     +  + VTGT GK+SV  ++ Q+  R       +G   +      Q    TT
Sbjct: 104 RLYGDPSARMRVVGVTGTDGKTSVTQYLAQLLDREAHRCGLVGTLGSGFPDSLQPGTHTT 163

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P    + + L+ L  QG   V++E SSH LDQHR+ G++      TNLGRDH+DYH    
Sbjct: 164 PDAASVQRTLARLHRQGAAQVAMEVSSHALDQHRVAGVRFHTAVLTNLGRDHLDYHGDLA 223

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y  AK RLF     + +   +                        G+    +  + +  
Sbjct: 224 GYAEAKSRLFGVPGLQWAVLNLDDAFGRQVHGALAGGTRALGYSLAGHPQAGVRGEGLVL 283

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                ++ +S E  +     PL G F   N L  A   +++G+   +++E L  L  VPG
Sbjct: 284 EPQGLRLRLSTEWGEAPVQAPLLGAFNAANVLAVAAAALSLGVALPVIVERLAGLRPVPG 343

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E      R   + VDYAHT  +L   L  +R    G + +VFGCGGDRD+GKRP+MG+
Sbjct: 344 RMEPFTRPGRPS-VIVDYAHTPAALRGALAAVRAHYRGAVWLVFGCGGDRDRGKRPLMGE 402

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVL 462
            A +LAD  ++TDDNPR EDP++I  +I  G P   +    +R  AIR A+E    +DV+
Sbjct: 403 AAAELADRVVLTDDNPRREDPDRIIDDIRQGAPGRDWPVLRDRAGAIRHAVERAGPEDVV 462

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +VAGKGHETV  + +       D + + + LG
Sbjct: 463 LVAGKGHETVQQIGD-RCLPFSDREAVVQALG 493


>gi|299065603|emb|CBJ36775.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CMR15]
          Length = 514

 Score =  279 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 160/507 (31%), Positives = 231/507 (45%), Gaps = 31/507 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQ 62
           I      +++ L        +     ++SD+R ++ G +FVA V GN   + DG   IPQ
Sbjct: 12  IAARLAPVLDWLRAHVPAGAD-----LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---NILA 119
           AI  G  A++  +   +   +A  R    IL VD   +     A++ Y         ++ 
Sbjct: 67  AIEAGVSAVLAEAHGYVVPANAPAR----ILPVDGLSELAGPLAAQWYAVPGPDALRVIG 122

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S + ++ Q   R G     +G   T           TTP  I L  +L+ L 
Sbjct: 123 VTGTNGKTSCSQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLADLH 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL- 237
             G   +++E SSHGL+Q R DG +     FTNL +DH+DYH T   Y  AK RLF    
Sbjct: 183 RAGARAIAMEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPG 242

Query: 238 -----LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                + ++  A           +    +       +    G ++    V A        
Sbjct: 243 LRAAVINRDDAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFD 302

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +           P+ G F V N L   G+ +  G+     L  LEKL  V GR E  G  
Sbjct: 303 VDGSFGRATVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFG-G 361

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             G  + VDYAHT ++LE  L+ +  IT    G++  VFGCGGDRD GKRP MG IA  L
Sbjct: 362 EDGPLVVVDYAHTPDALEQTLRALAPITEARGGKLWAVFGCGGDRDPGKRPQMGAIAERL 421

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   ++T DNPRSEDP+ I   I  G+      ++  +R  AI  A+   +  DV+VVAG
Sbjct: 422 AQHVVLTSDNPRSEDPQLILDMIADGMEDPYAAVQIEDRAAAILHAVRHADVHDVIVVAG 481

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE+   +  G K+   D + +R  L
Sbjct: 482 KGHESTQEIA-GRKRPFSDQEHVRLAL 507


>gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
 gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
          Length = 499

 Score =  279 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 142/493 (28%), Positives = 236/493 (47%), Gaps = 34/493 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAI----VGNKEDGHLFIPQAIAQGAEAIVVS 74
               ++W  +  +    DSR +QAG IF+A+      +K    +F   A++QGA  I+  
Sbjct: 11  GNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSQSDKT--RIFAENALSQGALGIISE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENILAVTGTSGKSSVA 130
           S   +          T   V    R+++  +  +        +   ILAVTGT+GK++++
Sbjct: 69  SDLGV----------TTAWVCPQVRQWMGGWQKQYLQATRPVNSARILAVTGTNGKTTIS 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             + ++          +G T          +  TT   + L  AL   SSQG   V++EA
Sbjct: 119 RLIAELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFVALEA 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL+Q RL+G ++    ++NL RDH+DYH T  AY +AK  LF+    +   A+I  D
Sbjct: 179 SSHGLEQGRLNGCEIEIAIYSNLSRDHLDYHGTLTAYADAKALLFKFATLRS--AVINLD 236

Query: 250 DAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           D Y+  +++ A     R      S+ +      +  +       +  +     ++    P
Sbjct: 237 DDYAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLKGAKFKLIAPTGEYVVQSP 296

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N + +       G   + +L  + +L   PGR + +    R     VDYAHT
Sbjct: 297 LLGQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDAER--LFVVDYAHT 354

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L  ++     ++  +FGCGGDRD+GKRP+M + AL+ AD  I+T DNPR+E P
Sbjct: 355 PDALTQVLVTLKRHVQHQLWAIFGCGGDRDRGKRPLMTQAALNDADPVILTSDNPRTESP 414

Query: 426 EKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           E+I  ++ H    G     E  +R EAI+ A++     D++V+AGKGHE    + +G + 
Sbjct: 415 EQIFTDMKHEVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKGHENYQEI-DGVRH 473

Query: 482 MSVDCDIIREILG 494
              D   ++  L 
Sbjct: 474 WFDDVVEVQSALE 486


>gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia
           minopimelate ligase [Stenotrophomonas maltophilia K279a]
          Length = 502

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 146/494 (29%), Positives = 212/494 (42%), Gaps = 23/494 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+               +   +  +  +  DSR ++ G  FVAI G    G  F+
Sbjct: 5   MLLSQLLPD-----------VALAGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA A GA  I+       +  +         + V   R  +   A + +G    ++  +
Sbjct: 54  EQARAAGASVILFEPPAPAELPAPADA-----IAVPGLRARMGAMADQFHGAPSRSMAMV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    + Q     G  S  IG          +    TTP  + +   L+ L
Sbjct: 109 GVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQL 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V++E SSH LDQ R+D +      FTNL RDH+DYH    +Y  AK RLF   
Sbjct: 169 RDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRP 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K +   +             A      + S G     +  + +          + ++G
Sbjct: 229 GLKAAVINLDDAFGGQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PL G F V N L  AG   A G     + E L  L  + GR   +G       
Sbjct: 289 QRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPT 348

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L ++     G +  VFGCGG+RD GKRP M  IA  LA+  IVTD
Sbjct: 349 VVVDYAHTPDALEQALDSLHGHLQGTLFCVFGCGGERDTGKRPQMATIAERLANKVIVTD 408

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR ED + I A+I+ G         + +R  AI  A++     D++++AGKGHE    
Sbjct: 409 DNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRAGAGDIILIAGKGHEPYQE 468

Query: 475 VTNGEKKMSVDCDI 488
           V NG +    D ++
Sbjct: 469 V-NGVRHDFDDTEV 481


>gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
 gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
          Length = 496

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 224/469 (47%), Gaps = 14/469 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR + +  +FVA+ G   +G  ++     +G    VV   Y  +   A+  ++  I
Sbjct: 27  VKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVV-PTYVAKGLIASNSTDLNI 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +  D+    LS    +  G  P +++ VTGT+GKSSV+ ++ Q+    GLS   IG    
Sbjct: 86  IGSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFGV 145

Query: 153 ISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 ++ + TTP  + + K L+  +  GV  V+ EASSH LDQ R+ GI++    FTN
Sbjct: 146 GKLNNLESAKQTTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAGIEIDTAVFTN 205

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L +DH+DYH T ++Y  A  +     L     A+  +   Y   + + +   G +     
Sbjct: 206 LTQDHLDYHGTMESY--ATAKRKLFRLDTLKHAVFCSKSDYCNFMAEDSK--GDKSYYGE 261

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                  ++ V          +  +   +    PL GEF V NA+ A      +  D   
Sbjct: 262 RPSDDFVIRDVTYHSLGCSFLLLTKSGHYSVELPLMGEFNVDNAVAALASLWPLFDDKVA 321

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           ++  L  L   PGR E V  +       V  DYAHT ++L + LK +   + G I  VFG
Sbjct: 322 LISSLTSLKGAPGRMERVTLSEGANVPVVLVDYAHTPDALSVALKALAVHSKGPITCVFG 381

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGN 444
           CGGDRD+GKRP M + ALDLAD  ++T DNPRSE P +I  + + G+        I   +
Sbjct: 382 CGGDRDKGKRPEMMRAALDLADKVVLTTDNPRSEIPSEIMQDALSGVAECERQRVILDED 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R  AI  AI   +  ++++VAGKGHET   +  G K    D +     L
Sbjct: 442 RRSAIEFAIATASINEIVLVAGKGHETYQEIG-GVKSHFDDREEALNAL 489


>gi|38234178|ref|NP_939945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200440|emb|CAE50128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           diphtheriae]
          Length = 513

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 159/497 (31%), Positives = 238/497 (47%), Gaps = 19/497 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL     +        +I+ +  DS  + A  IF A+ G K  G  +  Q  A  A A
Sbjct: 14  LTELAGGRLVGETTAGATEISAIGLDSSQLPADAIFAALPGTKTHGAHYASQGKAAAALA 73

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           ++     +     +      PI+ VD+ R+ L + ++ +YG     +  + VTGTSGK++
Sbjct: 74  VLSDHEGTQILVDSG--EKRPIIEVDDVRRVLGILSAEIYGHPSHEMTIIGVTGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  +++    +GL    IG T T  +      +LTTP    L +  S + ++GV+HV +
Sbjct: 132 TSYILERGLMAAGLHVGLIGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGVSHVVM 191

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAII 246
           E SSH L   R+ G +  A  FTNL +DH+D+H T Q YF AK   F+   P     +++
Sbjct: 192 EVSSHALALGRVTGTRFSAAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPIHAEKSVV 251

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK----QQVTISVEGKDFDF 302
             +D + K + +RA      V +            V  I       Q   +    +  D 
Sbjct: 252 CVNDLWGKNMAERAGADAITVCTEQEAAAHQADYWVSNIDVNPVGAQSFIVHHGAQSTDV 311

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG F + N +VA  L  ++G+D+   +  +  + V PGR E +          VDY
Sbjct: 312 HLPLPGGFNIANTVVALALAESVGVDTDAFIRGIADVAV-PGRMERIDRGQE-FLAVVDY 369

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   ++ +++  +R    GRI VV G GGDRD GKRPIMG  A   AD+ IVTDDNPRS
Sbjct: 370 AHKPAAVAVVIDTVRDQVPGRIAVVVGAGGDRDSGKRPIMGAEAARRADLVIVTDDNPRS 429

Query: 423 EDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP KIR  ++ G           E G+R EAIR A++     D ++VAGKGHE   ++ 
Sbjct: 430 EDPAKIREAVLEGAHGVAGSADIREIGDRREAIRIAVQWAQPGDAVIVAGKGHEVGQLI- 488

Query: 477 NGEKKMSVDCDIIREIL 493
           NG      D + +   L
Sbjct: 489 NGVDHHFDDREEVAAAL 505


>gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
 gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
          Length = 492

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 183/503 (36%), Positives = 263/503 (52%), Gaps = 23/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L             I      E  +   + D+R +  G +F A  G + +G  FI
Sbjct: 1   MKLSKL--------CVGAGIDCPSGAEINVTGFAIDNRKVAPGTVFGAFQGAQVNGEDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P        A + + A ++   +A        +  D  RK  +  A+  +   PE+I+AV
Sbjct: 53  P--------AAIEAGAVAVVARAAAKVEGALHIASDIPRKCFAELAAGFFTPAPEHIVAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +QI + SG  +  IG    T    +    LTTP  +     +S L+ 
Sbjct: 105 TGTNGKTSCVEMTRQIWRMSGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAR 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV+ EASSHGL Q+R +G+ + A  FTN  RDH+DYH   + YF AKMRLF+E++ 
Sbjct: 165 EGVTHVAYEASSHGLSQYRNEGVAVEAAGFTNFSRDHLDYHADMEDYFAAKMRLFDEVVS 224

Query: 240 KESPAIIYA---DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             + A+I+    +  ++  V+  A   G  V++VG QG+ I L         Q +T+   
Sbjct: 225 DGATAVIWMGAGESGWNARVVDHAKQRGLTVMTVGEQGEDIRLTHREPTQLGQSLTVEHA 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G +     PL G +QV NALV+ GL +A GID++ V + + +L  V GR E       G 
Sbjct: 285 GTERTINLPLIGAYQVSNALVSGGLALATGIDASRVWDAVARLQPVRGRLERAVIAPSGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +Y+DYAHT ++LE  +  +R   +GR+I VFG GGDRD GKR  MG+ A   +D+ IVT
Sbjct: 345 PVYIDYAHTPDALEAAIAALRPHVTGRLITVFGAGGDRDHGKRAPMGEAAAKASDLVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPR EDP  IR  ++ G     E   R EAI  AI    K D++++AGKGHET  I+ 
Sbjct: 405 DDNPRGEDPADIRRAVLEGAGEAREVAGRREAIHAAIAEAGKDDIVLIAGKGHETGQIIG 464

Query: 477 NGE---KKMSVDCDIIREILGLI 496
           +GE        D ++ RE   LI
Sbjct: 465 SGENMRVHPFDDVEVARECAALI 487


>gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 495

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 148/491 (30%), Positives = 232/491 (47%), Gaps = 31/491 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +Y +   +   L+       + +IN +  ++ + Q G +F+A+ G    G   I +AI +
Sbjct: 29  LYNERMNITQLLADITPTKIDLEINGLCLNTHNAQTGDLFIALQGETTHGINHIERAIEK 88

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSG 125
           G  A++V S          +    P++ ++N +++L   AS  Y +  +  ++ VTGT+G
Sbjct: 89  GCVAVLVDSH--------DLECAIPVIRIENLKQYLPALASAYYSQATKVEVIGVTGTNG 140

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV  F+ Q+    G+ +  IG     +S       TTP    L KAL       +   
Sbjct: 141 KTSVGYFISQMLSELGIKNGFIGTLGISNSDVASA-NTTPDIFTLYKALHQYHLDNINTA 199

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSHGLDQ+R+ G+      FTNL +DH+DYHQT   Y   K++LF          I
Sbjct: 200 VLEVSSHGLDQNRVAGLNFKQAIFTNLTQDHLDYHQTLDEYRQVKLKLFSF--DSIQSVI 257

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DDAY ++ +  +        S+    K              +     +  +F F  P
Sbjct: 258 INQDDAYHQDFLDASKGKKQTTYSIKDFEKIT----------INEQGFLCQLDNFVFEIP 307

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + N L A      +G     ++  L +L    GR + +         +VDYAHT
Sbjct: 308 LLGKFNLSNVLAAFNSVEQLGFSREGIIPLLSRLFPPLGRMQKIKKAL----AWVDYAHT 363

Query: 366 SNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            ++L   +  ++       I +VFGCGG+RD+ KR  MGKIA  LAD  ++T+DNPR ED
Sbjct: 364 PDALANAITTLKEHHPEHKIRIVFGCGGNRDKSKRAKMGKIASKLADTIVLTNDNPRKED 423

Query: 425 PEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P+ I  +I+ GI    E     +R  AI TAI  LN+ + L++AGKGHE+     N    
Sbjct: 424 PQAIINDILSGIDDSFELDITLDRQLAIETAITTLNEGECLLIAGKGHESTQEFKNKTTA 483

Query: 482 MSVDCDIIREI 492
              D +I +  
Sbjct: 484 -FNDVEIAQNA 493


>gi|312140147|ref|YP_004007483.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-dia minopimelate
           ligase mure [Rhodococcus equi 103S]
 gi|311889486|emb|CBH48803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Rhodococcus equi 103S]
          Length = 547

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 236/513 (46%), Gaps = 25/513 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      +  +L        +  ++  V   ++ ++ G +F A+ G    G  F+  AIA
Sbjct: 28  LTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEFVGVAIA 87

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
            GA A++   A        +    ++ P+LV  + R+ L   ++ +YG   E++  + +T
Sbjct: 88  AGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHMQIIGIT 147

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GTSGK++ +  V+     +G +   +G   T  +     + LTTP    L    + +  +
Sbjct: 148 GTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRER 207

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+  V +E SSH L   R+DG++   G+FTNL +DH+D+H+    YFNAK RLF      
Sbjct: 208 GIDTVVMEVSSHALALGRVDGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAV 267

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVL--------SVGYQGKFIHLKKVCAIHNKQQVT 292
            +   +   D      M                   +                 N+    
Sbjct: 268 CAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSDTGNQVFTL 327

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +G        LPG + V NA +AA +C + G D    L  +  + V PGR E V   
Sbjct: 328 TGPDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAALAGIANVDV-PGRVERV-ER 385

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +     VDYAH   +LE ++  +R  T GRI VV G GGDRD+GKRP+MG+     AD+
Sbjct: 386 GQDFLAVVDYAHKPAALEAVIATLRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADL 445

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +VTDDNPR+EDP  IRA+++ G             E G+R EAI  A+      DV++V
Sbjct: 446 LVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGAVREIGDRAEAIAAAVRWARTGDVVLV 505

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           AGKGHE+   V +G K    D +++   +  I+
Sbjct: 506 AGKGHESGQEV-HGVKHPFDDREVLAAAIARIV 537


>gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 485

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 194/481 (40%), Positives = 267/481 (55%), Gaps = 11/481 (2%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L +          +  ++++++DSR +  G +FVA+ G K DG  F  Q     A     
Sbjct: 5   LADLFPEAAGPAADLTVSDLTADSRQVATGTVFVAVPGTKADGRRFAAQ-----AAQRGA 59

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++        A +      + V + R+ L+L A+RL G  PE ++AVTGT+GKSSVA FV
Sbjct: 60  AAVAGEGTRPADLPDAVAWIPVADARRALALAAARLAGPQPETVVAVTGTAGKSSVADFV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +QI  R G  +  +G         AQ   LTTP P+ L + L+ L+++GVT +++EASSH
Sbjct: 120 RQILARLGRDAASLGTVGIVTGRGAQYGSLTTPDPVTLHRTLARLAAEGVTDLAMEASSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G++Q RLDG++L A  FTNLGRDH+DYH + + Y  AK+RLF +LLP   PAI+ AD AY
Sbjct: 180 GIEQRRLDGVRLDAAGFTNLGRDHLDYHASIEEYLAAKLRLFTDLLPPGRPAIVNADGAY 239

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGE 309
           ++ V+  A  AG  V +VG  G+ + ++ V      Q   +   G+  D   P       
Sbjct: 240 AERVIAAAEAAGRPVRTVGRGGRDLRVEAVRTEGFAQAARVLFAGRARDLRLPLVGEFQV 299

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
                A   A    A   D   V   L+ L  VPGR E +G    G    VDYAH   +L
Sbjct: 300 ENALVAAGLALATPAGAADPDGVFAALDHLTGVPGRMERIGEARGGLC-LVDYAHKPEAL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E +L  +R   +GR++ VFGCGGDRD+GKRP+MG IA  LAD+ IVTDDNPR+ED   IR
Sbjct: 359 ESVLTALRPFATGRLVAVFGCGGDRDRGKRPLMGAIAQRLADVVIVTDDNPRTEDAAAIR 418

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             I+   PG  E G+R EAI +A+  L   DVLVVAGKGHET  IV +       D  ++
Sbjct: 419 RAILDAAPGAEEIGDRSEAIHSAVSRLGPGDVLVVAGKGHETGQIVGD-RTLPFSDHAVL 477

Query: 490 R 490
           R
Sbjct: 478 R 478


>gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actG]
          Length = 521

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 231/504 (45%), Gaps = 25/504 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL      E        P       +  ++ DSR ++ G I+ A+ G +  G  F  Q
Sbjct: 17  LDDLAEALGVEPRGGRGPAPAD-----VTGITHDSRAVRPGDIYAALPGARFHGADFAAQ 71

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A + GA A +   A +       + +  P+LVV + R  +   A+R+YG   ++   + +
Sbjct: 72  AASLGAVAALTDPAGA----ERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGI 127

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ A  ++   + +G S+  IG     I      +  TTP    L    + +  
Sbjct: 128 TGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRE 187

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GV  V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     
Sbjct: 188 RGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARS 247

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
           +        DD Y + ++  A        + G+       + V         T+      
Sbjct: 248 RRGVVNY--DDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGS 305

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +    PLPG F V N L A       G D  +  E +  +  VPGR E V    +    
Sbjct: 306 RYPARAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV-DEGQPYLA 364

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T D
Sbjct: 365 VVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSD 424

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSEDP  I A ++ G       E+G+         AI   +      D +++AGKGHE
Sbjct: 425 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 484

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               V NG  +   D ++++E + 
Sbjct: 485 QGQDV-NGVVRPFDDREVLKEAIR 507


>gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 513

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 147/506 (29%), Positives = 228/506 (45%), Gaps = 30/506 (5%)

Query: 6   LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +    F +LI  L +          + +V  DSR  + G +FVA+ G   DGH F+  A 
Sbjct: 1   MTQSRFSDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADAR 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
           A+GA A +V S      +   + +      V NTR  L L A+  +G+  E   I+ +TG
Sbjct: 61  ARGAVAALVES------WEPDLANYPAYAAVPNTRAALPLVAATFFGRPAEALGIIGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSS 179
           T GK++ +  V  + + +G  +  IG  +          D R TTP  + + + L+ +  
Sbjct: 115 TDGKTTTSYLVDAMLRSAGYRTGLIGTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMRE 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE--- 236
             V    +EA+SHGL  HRLD      G  TN+  +H+++H T + Y  AK RL E    
Sbjct: 175 ARVDWAVLEATSHGLALHRLDECAFDVGVVTNITHEHLEFHGTIEEYRRAKARLLERVAG 234

Query: 237 --LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               P     ++  DD  ++ + + A  A     S       +    V    +     ++
Sbjct: 235 RGPRPYPGGVVLNRDDEGARAIAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTSFRLT 294

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G + V NAL AAG+   +G+    +   LE L  VPGR   V     
Sbjct: 295 TPRGSVPVRLNLIGAYNVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGRMRRVDLGQ- 353

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT +SLE  L+ +R++  GR+I VFG  G+RD+ KRP+ G ++  LAD ++
Sbjct: 354 PYTVIVDYAHTPDSLEKSLRLLRSLVPGRVIAVFGSAGERDRAKRPLQGAVSARLADFSV 413

Query: 415 VTDDNPRSEDPE--------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            T ++PR EDP+          R         ++   +R  AIR A++     D +++AG
Sbjct: 414 FTSEDPRFEDPDAIIAEIAAGARDAGAVEGRDYVCIEDRRAAIRAALDWARPGDGVLLAG 473

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KGHE   I     +      D  RE 
Sbjct: 474 KGHERCIIYGAERRPW----DEAREA 495


>gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actF]
          Length = 526

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 231/504 (45%), Gaps = 25/504 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL      E        P       +  ++ DSR ++ G I+ A+ G +  G  F  Q
Sbjct: 22  LDDLAEALGVEPRGGRGPAPAD-----VTGITHDSRAVRPGDIYAALPGARFHGADFAAQ 76

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A + GA A +   A +       + +  P+LVV + R  +   A+R+YG   ++   + +
Sbjct: 77  AASLGAVAALTDPAGA----ERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGI 132

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ A  ++   + +G S+  IG     I      +  TTP    L    + +  
Sbjct: 133 TGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRE 192

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GV  V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +LF     
Sbjct: 193 RGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARS 252

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
           +        DD Y + ++  A        + G+       + V         T+      
Sbjct: 253 RRGVVNY--DDEYGRRLITEAEVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGS 310

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            +    PLPG F V N L A       G D  +  E +  +  VPGR E V    +    
Sbjct: 311 RYPARAPLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERV-DEGQPYLA 369

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T D
Sbjct: 370 VVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLADTAVLTSD 429

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSEDP  I A ++ G       E+G+         AI   +      D +++AGKGHE
Sbjct: 430 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHE 489

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               V NG  +   D ++++E + 
Sbjct: 490 QGQDV-NGVVRPFDDREVLKEAIR 512


>gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
 gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
          Length = 503

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 148/470 (31%), Positives = 233/470 (49%), Gaps = 18/470 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR +  G +F+A+ G   DG  FI QA+  G  A++  +         +  ++  +
Sbjct: 34  LHLDSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVLAHAE-----PGGSASADARV 88

Query: 93  LVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           + ++     L      L+       ++ VTGT+GKSSV  ++  + +  G  +  +G   
Sbjct: 89  IHLEGLAGQLGELGRSLFEVPASLELIGVTGTNGKSSVTHYIAALSRLLGRDAGMVGTLG 148

Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  ++ RLTTP P+ L  AL  L+++GV  V++EASSH L+Q RL G +L    FT
Sbjct: 149 HGRPGALREGRLTTPGPLALQSALGELAAEGVERVALEASSHALEQERLAGCRLTTAVFT 208

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL RDH+DYH +  AY  AK RLF    P+   A++  DD  ++ ++         +   
Sbjct: 209 NLSRDHLDYHGSMAAYAAAKARLFRR--PELRLAVVNGDDPLARLMLAGLPAGVRVLAVG 266

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +   + +  V  +   Q+  I+    +      L G F + N L+A      +G D  
Sbjct: 267 DDEAVTLRVVGVEPLPQGQRAVIATPEGERVLEIALMGGFNLTNVLLAIATLHGLGEDLE 326

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVF 388
            +     +L  VPGR + +G    G  + +DYAHT ++LE  L+ +R      GR+  +F
Sbjct: 327 ALFAAAAELAPVPGRMQVLGDAR-GPTVVIDYAHTPDALENALQALRAHLPDQGRLWCLF 385

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKG 443
           GCGGDRD GKRP+M   A   +D+ ++TDDNPRSE    IR +I+ G+           G
Sbjct: 386 GCGGDRDAGKRPLMAAAAERYSDVPVITDDNPRSEAAAAIREQILAGLSESARRSARVLG 445

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            R  AIR  I  ++ +DV+++AGKGHET   +  G +    D D  +  L
Sbjct: 446 GRAAAIRETIAEVDAEDVILIAGKGHETYQEIE-GVRHPFSDLDEAQAAL 494


>gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 515

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 159/508 (31%), Positives = 240/508 (47%), Gaps = 26/508 (5%)

Query: 2   KLQDL-IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           KL++L I   F ELI+             I  +  DSR++  G +F+AI G+K DG L+I
Sbjct: 15  KLRELVIPWVFNELISSA---------LVITALQLDSRNVTVGNLFIAIKGHKTDGRLYI 65

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNT----PILVVDNTRKFLSLFASRLYGKHPEN 116
             AI  GA A+++ S  +    +  I +N     PI+      + +S  A R YG    N
Sbjct: 66  KHAIKNGAVAVLLESTNNDNFLAQNIVNNVSSCVPIINFYKLNQAVSSIAGRFYGHPSRN 125

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKA 173
           +  + VTGT+GK++++  +    +  G  S  +G        +      TT S I   + 
Sbjct: 126 LNLIGVTGTNGKTTISHLLANWVELLGEKSAVMGTIGYGMIGSMCVSNCTTFSAIDTQRI 185

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+     G+  V++E SSHGLDQ+R+D +      F+NL  DH+DYH     Y  AK RL
Sbjct: 186 LNQFIQSGIKFVAMEVSSHGLDQYRVDALYFDVAIFSNLTSDHLDYHGDINKYIMAKWRL 245

Query: 234 FEELLPKESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           F EL        +  Y    +   +           L   ++G++I L K         V
Sbjct: 246 FSELCVTNYVINVDDYIGYEWLSYLPNSVAVTIQDNLPKFWKGEWIKLVKANYFVYGTDV 305

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  +      L GE  V N L+A G  + +G    ++L   ++L  + GR E    
Sbjct: 306 FFHSSWGNGIIRSQLLGECNVSNLLLALGALLVLGYPLMVLLSIADQLKPICGRLEKFK- 364

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +     I VDYAHT ++LE IL+ +  +    G++  VFGCGG+RD+ KR  MG +A   
Sbjct: 365 SFNKPTIIVDYAHTPDALEKILRFLGAQLCKKGKLWCVFGCGGNRDKLKRSRMGIVAERY 424

Query: 410 ADIAIVTDDNPRSEDPEK---IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +D  ++TDDNPR+E+ +         I          NR++AI TAI   +  D +++AG
Sbjct: 425 SDYVVITDDNPRTENSQSIIDDIILKIKHSEKITIIKNRVQAIETAICQADSNDFILIAG 484

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHE+  IV N   K   D DI+R IL 
Sbjct: 485 KGHESYQIVGNDYLKY-SDQDIVRNILE 511


>gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 494

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 162/477 (33%), Positives = 241/477 (50%), Gaps = 19/477 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNK------EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +DSR +  G +FVA+ G         DG  FI +A A GA A+V      ++   A  
Sbjct: 20  IRTDSRKVGRGDVFVAVPGVAANGGAGVDGADFIVKAWAAGAGAVVC-LPARVEAALADA 78

Query: 87  RSNTPILVVDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                +   D+ R  + L   A       P  ++AVTGT+GK+++   +  +    G  +
Sbjct: 79  PEGAVVAAHDDPRVAIGLLGQARYGTDALPFPVVAVTGTNGKTTITYLLDHVFSALGRRA 138

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G  S     FA D  LTTP  I     L  +   GV    +E SSH LDQ R+ GI+
Sbjct: 139 GVLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALMEVSSHALDQRRVAGIR 198

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TNL +DH+DYH   + Y+ AK RLF EL   +    + ADDA+ + ++    +A
Sbjct: 199 FAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAVNADDAWGRRLLGEVPHA 258

Query: 264 GCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               L  G      +F+H + V    +   + ++ EG+ ++    L G     N L    
Sbjct: 259 IGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELSSHLVGAHNASNLLAVQA 318

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +C+ +G+        L     VPGR E +  N RG  I+VDYAHT ++LE +L+ +R + 
Sbjct: 319 VCLGMGLAPQDFA-SLAGFTGVPGRLERI-VNPRGLDIFVDYAHTPDALENVLRALRAVG 376

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIP 437
             RI+ VFGCGG+RD+ KRP+MG+     AD+A++T DNPR EDPE I A++   + G  
Sbjct: 377 FSRIVTVFGCGGNRDRTKRPLMGQAVARHADVAVLTSDNPRHEDPEAIMADVLPGLAGAR 436

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +   +R  AI  A+ +L   DVL+VAGKGHE+   + +  K    D  +IREILG
Sbjct: 437 KVVSDADRARAIGKALALLQPGDVLLVAGKGHESYQQIGD-RKVPYSDQQVIREILG 492


>gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
 gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
          Length = 501

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 205/470 (43%), Gaps = 21/470 (4%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   + +DSR +  G  F+A  G   DG  ++  A+A GA A +V     LQ F     
Sbjct: 18  RVTGSLRTDSRMVGGGDGFIAWPGAATDGRKYLGDALASGARACLVE----LQGFEPRGP 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +  +      +      A+  + +   +  + AVTGT+GK+S   ++ Q   R G    
Sbjct: 74  DDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGKTSTTWWLAQALGRLGRKCG 133

Query: 146 QIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +        LTTP P+ L + +     +G    ++EASS GL + RLD   +
Sbjct: 134 VVGTLGIGAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATCALEASSIGLVERRLDATTI 193

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTN  +DH+DYH + Q Y+ AK  LF         A +   D      +  +    
Sbjct: 194 QVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSW---PGLKAAVINVDDGKGLELSASLAGS 250

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              +          +      H        +    +       L G++ VYN L      
Sbjct: 251 DLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSSKLVGQYNVYNLLGVIAAL 310

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+GI     +     L  VPGR + +        + +DYAHT ++LE +L  ++ +   
Sbjct: 311 RAMGIPLVDAVAACADLLPVPGRMDTLAEEGLPL-VVIDYAHTPDALEKVLTALQPVARS 369

Query: 383 R---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436
           R   +  VFGCGGDRD GKRP+M  +A   AD  +VT DNPRSE+P  I  +++ G+   
Sbjct: 370 RGGQLWCVFGCGGDRDAGKRPLMAAVAEKNADRVVVTSDNPRSENPLAIIDQVLRGLNHR 429

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                + +R  AI  A+ +    DV+++AGKGHE+   V  G K    D 
Sbjct: 430 DAVHVQADRAMAITHALSLAQAHDVVLLAGKGHESYQEVQ-GVKLPFSDR 478


>gi|224476113|ref|YP_002633719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420720|emb|CAL27534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 494

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 139/503 (27%), Positives = 230/503 (45%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  K   + +       +   +R+I ++++DSR  + G +FVA  G   D H F 
Sbjct: 1   MKANELFEKIKSKQV-------LGSLDREITDITTDSRTAEEGSVFVATKGYTVDSHKFC 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
              + QG + IVV S   ++        +   ++V  TR+  SL   +LY    E     
Sbjct: 54  QDVVNQGCKLIVVESEQEVEG-------DVTQVIVPKTRRVASLIVHKLYNYPSEQLTTY 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+A+ + QI ++ G  S  +G      +        TTP  + L K +   
Sbjct: 107 GVTGTNGKTSIATMIHQIHRKLGKGSAYLGTNGFQINETVTKGENTTPETVTLTKKIHEA 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
              G   +++E SSHGL   RL G++     F+NL +DH+D+H T +AY +AK       
Sbjct: 167 VEAGAESMTLEVSSHGLALGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQL 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E L KE  A++ ADD +S+ +                +      +++            
Sbjct: 227 GEDLRKEKFAVVNADDDFSEYLTSVTPYEVFTYGIH--RPAQFKAERIQESLTGASFDFV 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                F    P  G+F + N + A       G     +++ + +L  V GR E +  +  
Sbjct: 285 TPDGTFHVDSPYVGKFNISNIMAAMTAVWGTGTPMQEIVDVVSQLEPVEGRLEVLDPS-L 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAHT++ +E ++  ++     ++I + G  G+RD  K P MGK A   AD  I
Sbjct: 344 PIDLIIDYAHTTDGIEKLIDAVKPFVKQKLIFLIGMAGERDLTKTPEMGKQASR-ADYVI 402

Query: 415 VTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNP ++DP+ + AE+  G     ++E  +R E IR AI++    D +V+A KG E  
Sbjct: 403 FTPDNPANDDPKMLTAELAKGATHDNYVEYTDRAEGIRHAIDVAEPGDTVVLASKGREPY 462

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
            I+    K    D     +++GL
Sbjct: 463 QIMPGHVKVPHRD-----DLIGL 480


>gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 460

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 150/479 (31%), Positives = 226/479 (47%), Gaps = 36/479 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +     F  L+    I   +    +++ V  DSR I+ G +F+ I G   DGH F 
Sbjct: 1   MQLNE-----FASLLKTSQIVGDET--VEVSGVQIDSRKIKRGDLFICISGLVSDGHDFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            +A+  GA A+VV     +         N P ++V  TR  ++LFA+  YG   H   I+
Sbjct: 54  GKAVDNGAVALVVERRLDV---------NVPQILVKETRHAMALFAAHFYGYPAHDMKII 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++QI +  G  +  +G     I S       TT   + + K L+ +
Sbjct: 105 GVTGTNGKTTTTYLIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +   +  +E SSH LD  R+ GI   +G FTNL +DH+DYH+T   Y  AK +LF  +
Sbjct: 165 REKDTDYCVMEVSSHALDFGRVKGIPFRSGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRM 224

Query: 238 LPKES-------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                        AI+  DD  S+   +                       +       +
Sbjct: 225 GNDFVQDEKQRSYAILNVDDEASETFQRLTSAEVITYGIEKECDV--RASNIRITAEGTE 282

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T++      +    L G+F VYNAL A    +A GI    + + L ++  VPGR E V 
Sbjct: 283 FTLTTFEGTENIRMKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAEVDSVPGRMEVV- 341

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +  +   + VDYAHT + LE  L  ++    G +  VFGCGGDRD+ KRP+MGK+    +
Sbjct: 342 SEGQDYLVLVDYAHTPDGLENTLSTVKEFAEGHVYCVFGCGGDRDRTKRPLMGKVTAKYS 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           D   VT DNPR+EDP  I  +I+ GI         F    +R  AI+ AIE+ + +DV+
Sbjct: 402 DHLFVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFEIIVDRRLAIQKAIEVASPKDVV 460


>gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
 gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
          Length = 459

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 220/464 (47%), Gaps = 25/464 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++  DSR +  G++F AI G K D + F+P  +A+    +VVS              +  
Sbjct: 14  DMVYDSREVSEGFVFFAIKGTKVDANRFVPNILAKFKRVLVVSENGF---------DDER 64

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + VD+ RK + L A   +  HP   L V G +G +   +    +      S        
Sbjct: 65  CIKVDDVRKCMGLAADHFF-NHPSKKLKVVGITGTNGKTTTTYLLRSIFDNSEIIGTTGW 123

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T+         TTP  + L + L+ ++     +   E SSH L  +R++G+      FTN
Sbjct: 124 TLKDERFKLNNTTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRIEGVDFALKVFTN 183

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + +DH+D++   + Y   K+  FE L PK   A     D     ++  A           
Sbjct: 184 ISQDHLDFYDNLENYAKTKLSFFERLKPKVVNA-----DDSYGRMLIDAATISYGFSDFA 238

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +    ++        +  +  ++V  +      PL G++ +YN + A G+ +  G+D A 
Sbjct: 239 FIKPIVY----EYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDFAR 294

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + E + K    PGR EF   +  G    VDYAHT +++  +L+ +  I  GRII VFG G
Sbjct: 295 IEEGIAKSKGAPGRLEFFQKD--GAYAVVDYAHTDDAMRNVLEALNKIKKGRIITVFGAG 352

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEA 448
           GDRD+ KRP MG IA  L+D+ +VT DNPRSE+P  I  +I+ GI      I + +R EA
Sbjct: 353 GDRDRTKRPKMGSIAESLSDVVVVTSDNPRSEEPLAIIDDILEGISDRDRVIVEPDRFEA 412

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           I+ A+ M  K D++ + GKGHE   I+ + +     D +++R +
Sbjct: 413 IKKALGMAEKGDLVTILGKGHEDYQILKD-KTIHFDDREVVRRL 455


>gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
 gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
          Length = 544

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 152/501 (30%), Positives = 239/501 (47%), Gaps = 26/501 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRH--IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +  +     Q  E  +  V  D R   I A  +F A+ G +  G  F   A+ +GA AI+
Sbjct: 37  LEWVGQPGSQSSEVVVKGV--DLRAQGIVADDLFAALPGARTHGAQFAVDALGRGATAIL 94

Query: 73  VSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
              A      +A    +   P+LV  N R  L   ++ +YG+  E +  + +TGTSGK++
Sbjct: 95  TDEAGLELIEAAGKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTT 154

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  ++     +G     +G   T        + LTTP    L    + ++ QG+  V +
Sbjct: 155 TSYLLEAAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVM 214

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL-LPKESPAII 246
           E SSH L   R+DGI+   G+FTNL +DH+D+H+  + YF AK RLF+     +   A++
Sbjct: 215 EVSSHALALGRVDGIRFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVV 274

Query: 247 YADDAYSKEVMK-----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             DD + + + +      +        S       +   +V    ++    +  +G+ + 
Sbjct: 275 CVDDVWGRRMAELAATDESDAVTTVSTSTAEAEWKVGAVEVAEDGSQTFELVGPDGQSWP 334

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG + V NA +A  +  A G+D    +  L  + V PGR + +          VD
Sbjct: 335 VSLRLPGRYNVANAALALTVSFAAGLDPDAAVRALGTVDV-PGRVQRIDRGQS-FLAVVD 392

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH   +LE ++  +R    GR+ VV G GGDRD GKR +MG+     AD+ IVTDDNPR
Sbjct: 393 YAHKPAALEAVIATLRNQVPGRVAVVVGAGGDRDAGKRTLMGEAGARGADLLIVTDDNPR 452

Query: 422 SEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +EDP KIRA ++ G             E G+R  AI  A+      DV++VAGKGHE   
Sbjct: 453 TEDPAKIRASVMQGAIDVPESERGEIREVGDRALAIEQAVRWAQPGDVVLVAGKGHEVGQ 512

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            + +G K    D +++ E++G
Sbjct: 513 EI-DGVKHPFDDREVLGEMIG 532


>gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Herminiimonas arsenicoxydans]
 gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Herminiimonas
           arsenicoxydans]
          Length = 508

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 160/482 (33%), Positives = 230/482 (47%), Gaps = 32/482 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR I  G +F+A  G++ DG  +I  AI +GA+AI+  +A    D       N P L +
Sbjct: 28  DSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDEEW----NVPHLAI 83

Query: 96  DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           DN R      A+  YG     +  +AVTGT+GK+S + ++     R G  +  IG     
Sbjct: 84  DNLRACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIGTLGVG 143

Query: 154 SSFAQDNR------LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                ++        TTP  + L + L  +   G T +++EASS GL Q RL G+     
Sbjct: 144 IFKHGEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHFDMA 203

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN  RDH+DYH    AY  AK  LF+    +   A++  DDA    +++R       +
Sbjct: 204 LFTNFTRDHLDYHGDMAAYEAAKTMLFDWPGLRH--AVVNLDDALGVRLVERLKRRQSGI 261

Query: 268 LSVGYQGKFI--------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              GY                 + + H      ++ +         L GEF V N L   
Sbjct: 262 GITGYTLTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVSNVLGII 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+ +A GI  + V+  +E L  VPGR + +G       + +DYAHT ++LE  L  +R +
Sbjct: 322 GILLAKGIALSNVVAAIEALTSVPGRMQQLGGAEAPL-VVIDYAHTPDALEKTLATLREV 380

Query: 380 TSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            + R   +  VFGCGGDRD GKRP MGK A+  AD  IVT DNPR E+P  I A+I+ G+
Sbjct: 381 ANERGGALWCVFGCGGDRDAGKRPQMGKAAMA-ADHIIVTSDNPRHEEPASIIAQIVAGM 439

Query: 437 PGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                      +R +AI  A     KQDV+++AGKGHE    +  G K+  +D D     
Sbjct: 440 DVAKNAPHIMEDRAKAILYAGRHAAKQDVILLAGKGHEAYQEIK-GRKQPFLDADHAALA 498

Query: 493 LG 494
           L 
Sbjct: 499 LS 500


>gi|15827429|ref|NP_301692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae TN]
 gi|221229906|ref|YP_002503322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae Br4923]
 gi|6093448|sp|O69557|MURE_MYCLE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3080478|emb|CAA18673.1| udp-n-acetylmuramoylalanyl-d-glutamate --2,6-diaminopimelate ligase
           [Mycobacterium leprae]
 gi|13092979|emb|CAC31290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae]
 gi|219933013|emb|CAR71004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 530

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 141/504 (27%), Positives = 218/504 (43%), Gaps = 17/504 (3%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +L+ +    L +          +  +  V+  ++ + +G +F A+ G    G  +  
Sbjct: 20  RLPELVAQVGAVLADGPGQ-AATVPDIPVTGVTLRAQEVLSGDLFAALAGASTHGARYAG 78

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            A+ +GA A++   A   +       S+ PIL+    R  L   A+  YG     +  + 
Sbjct: 79  VALERGAVAVLTDVAGVAE--LTAQASSVPILIHPEPRSVLGGLAAAAYGHPSNRMTVVG 136

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLS 178
           +TGTSGK++    V+   +  G     +G        A     LTTP    L   L+ + 
Sbjct: 137 ITGTSGKTTTTYMVEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMV 196

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GV  V +E SSH L   R++G +     FTNL RDH+D+H   + YF AK  LF+   
Sbjct: 197 ERGVETVVMEVSSHALSLGRVEGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHS 256

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  ++   D  +             V ++G    +            Q+ T      
Sbjct: 257 LLRARTVVVCIDDDAGRATAARAGDAITVSALGQPASWRATDIRSPGVGAQEFTAVDPAG 316

Query: 299 DFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               +   LPG + V N LVA  +   +G+           + + PGR E +        
Sbjct: 317 VQHRVGIRLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIRI-PGRLERIDCGQ-DFL 374

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   +L  +L  +      R+ VVFG GG+RD GKR  MG+IA +LAD+ +VTD
Sbjct: 375 ALVDYAHKPGALHSVLTALLQ-PDHRLAVVFGAGGERDPGKRAPMGEIAAELADLVVVTD 433

Query: 418 DNPRSEDPEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR EDP  IR +I+       G    +E G+R  AI+ A+      DV++VAGKGHET
Sbjct: 434 DNPRGEDPAAIRRDILTGTVAAGGAAQVVEIGDRRAAIQYAVAWAGPDDVVLVAGKGHET 493

Query: 472 VHIVTNGEKKMSVDCDIIREILGL 495
                  E     D   +   L +
Sbjct: 494 GQ-RGAAETCPFDDRVELARALQV 516


>gi|291549494|emb|CBL25756.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus torques
           L2-14]
          Length = 488

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 141/502 (28%), Positives = 233/502 (46%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+ +    ++             ++  + +DSR ++ G +FV I G   DGH + 
Sbjct: 1   MKLDKLLERLDYTVVQGSDST-------EVTTLINDSRKVEEGSVFVCISGAVSDGHKYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
                   +     +A  + +    +  N  ++ V++TR  L+L ++  +G       ++
Sbjct: 54  A-------DVAAKGAAAVVVEKDVEVPENVTVIKVEDTRYALALMSAAYFGYPADKMKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++ I + +G     IG   + I      +  TTP    + K  + +
Sbjct: 107 GITGTKGKTTTTYMIKSILEETGHKVGLIGTIEAIIGDKKIPSCNTTPESYTIHKYFAEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V +E SS GL  HR  GI    G FTNLGRDHI  ++ +      + +     
Sbjct: 167 VEAGCDCVVMEVSSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFDDYKRCKGLLFK 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-E 296
             K   A    DD Y K+V K +                    ++ +      V   V  
Sbjct: 227 QCKLGIAN--VDDKYFKDVFKGSTCKIETFGFSPEADLRAENVELVSRPGYLGVAYHVAG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             DFD    +PG+F VYN+L A  +C    +   ++ + L+K  V  GR E +  +    
Sbjct: 285 VMDFDVEIDVPGKFSVYNSLTAISVCRHFQVPVEMIKDALKKAKV-KGRIEMIKVSD-DF 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + SLE +L  ++     R++ +FGCGG+R + +R  MG+++  LAD+ I+T
Sbjct: 343 TLMIDYAHNAMSLESLLTTLKEYNPKRLVCLFGCGGNRSKDRRFEMGEVSGRLADLTIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR E+P+ I  +I  GI      ++E  +R EAI+ AIE     DV+V+AGKGHE  
Sbjct: 403 SDNPRFEEPQDIINDIKTGIAKTDGKYVEICDRKEAIKYAIEHGEPGDVIVLAGKGHEDY 462

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
             +  G K    +  +I+E+L 
Sbjct: 463 QEIC-GVKHPMDERVLIKEVLE 483


>gi|325676972|ref|ZP_08156644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552272|gb|EGD21962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 547

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 149/513 (29%), Positives = 236/513 (46%), Gaps = 25/513 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      +  +L        +  ++  V   ++ ++ G +F A+ G    G  F+  AIA
Sbjct: 28  LTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEFVSVAIA 87

Query: 66  QGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
            GA A++   A        +    ++ P+LV  + R+ L   ++ +YG   E++  + +T
Sbjct: 88  AGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHMQIIGIT 147

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GTSGK++ +  V+     +G +   +G   T  +     + LTTP    L    + +  +
Sbjct: 148 GTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALFAAMRER 207

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+  V +E SSH L   R+DG++   G+FTNL +DH+D+H+    YFNAK RLF      
Sbjct: 208 GIDTVVMEVSSHALALGRVDGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSRLFAADSAV 267

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVL--------SVGYQGKFIHLKKVCAIHNKQQVT 292
            +   +   D      M                   +                 N+    
Sbjct: 268 CAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSDTGNQVFTL 327

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +G        LPG + V NA +AA +C + G D    L  +  + V PGR E V   
Sbjct: 328 TGPDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAALAGIANVDV-PGRVERV-ER 385

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +     VDYAH   +LE ++  +R  T GRI VV G GGDRD+GKRP+MG+     AD+
Sbjct: 386 GQDFLAVVDYAHKPAALEAVIATLRGQTKGRIAVVVGAGGDRDRGKRPLMGEAGARGADL 445

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +VTDDNPR+EDP  IRA+++ G             E G+R +AI  A+      DV++V
Sbjct: 446 LVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGEVREIGDRADAIAAAVRWARTGDVVLV 505

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           AGKGHE+   V +G K    D +++   +  I+
Sbjct: 506 AGKGHESGQEV-HGVKHPFDDREVLAAAIARIV 537


>gi|326333497|ref|ZP_08199738.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325948697|gb|EGD40796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 512

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 148/514 (28%), Positives = 217/514 (42%), Gaps = 57/514 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---------------- 53
              EL  +  +      E ++  VS  S+ +  G ++ A+ G++                
Sbjct: 23  TLAELAGEFGLDVRG--EARVTGVSLSSQRVLPGDLYAALPGSRAHGAGYAAGAVEAGAV 80

Query: 54  ---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
               D         A GA               +      P+L+V+  RK L   ++R+Y
Sbjct: 81  AVLTD---------AAGAAL-----------LESQGLGEVPVLLVEQPRKVLGALSARVY 120

Query: 111 GKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSP 167
           G     +  + VTGT GK++     +     SG  +  IG   T          LTTP  
Sbjct: 121 GNPSGRLRLIGVTGTQGKTTTTRLAESALLDSGHRAGVIGTVGTRIGGRDVKTPLTTPEA 180

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             L    + +  +G    ++E SSH L   R+DG+      F NLGRDH+D+H+T + Y+
Sbjct: 181 PDLHGLFARMVEEGTEACAMEVSSHALVMGRVDGVVFDVAVFLNLGRDHLDFHETVEDYY 240

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  LF     +         D      +           ++           +    +
Sbjct: 241 AAKADLFTPERAELGIV---NIDDEHGRRLAAEATIPILTYALHDDTADWRATDIELRPD 297

Query: 288 KQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV---VP 343
               T+       F    PL G++ V N L A         D  +V +    L     VP
Sbjct: 298 GSSFTVHGPDGLSFPAASPLAGDYNVSNTLAALASIHHAYGDETVVRDVATALAKGSGVP 357

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E +    +   + VDYAH  +++E  L  +R +T  R+IVV G GGDRD GKRPIMG
Sbjct: 358 GRLERI-DEGQPFTVVVDYAHKPDAVEAALGTLRPLTESRLIVVIGAGGDRDTGKRPIMG 416

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ 459
           +I+  LAD  IVTDDNPR+EDP  IR +++ G  G      E G+R  AI  AI +    
Sbjct: 417 EISARLADHVIVTDDNPRTEDPASIRRQVLAGTTGGSASVEEIGDRRAAIERAIGLAQPG 476

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D++VVAGKGHET   + NG      D  ++RE L
Sbjct: 477 DIVVVAGKGHETGQEI-NGVTHPFDDRQVVREAL 509


>gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
 gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
          Length = 505

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 137/509 (26%), Positives = 229/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++ K   +LI  +        + +I+ V+  S+ +  G++F A+ G + DGH FI 
Sbjct: 4   KLNDVLLKLDQDLIKYVK----GSLDLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI  G+  IV S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  MAIQNGSNVIVHSRDMDF------YSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +   GV +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSNMVKNGVQYAILESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS E       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSEFKNAVKKSFTYSLKSSQADFFVSFINEKIDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I   D   +++ L  +  + GR +   
Sbjct: 292 EFYYKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+I+   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +         +R +AI  AI +    D++VV
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVV 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREVFW-NEQEVVKNAI 498


>gi|164686386|ref|ZP_02210416.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
 gi|164601988|gb|EDQ95453.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
          Length = 502

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 125/498 (25%), Positives = 225/498 (45%), Gaps = 17/498 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + K   +++   +     + + +I +++  S   Q G++FVA+ G   DGH ++  A ++
Sbjct: 4   LTKVLEDVVFTSNTDSKSFDDIEIVDIAYSSLKCQEGYMFVALKGETVDGHKYVFDAYSR 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA   V+     + D +         ++V+++R  LS  ++  +G   +   I+ VTGT 
Sbjct: 64  GARVFVLQDDIEMADDAIK-------IIVEDSRIALSKISANYFGNPSKSLKIIGVTGTK 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVT 183
           GK+++ +++ ++  R+G+++  +G   T  +   +    TTP    L +    +   GV 
Sbjct: 117 GKTTITNYISEVLNRAGINTGVVGTNGTFYNNISETTVNTTPESYELHRIFRKMLDSGVE 176

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VS+E SS GL +HR++ +      FTNL  DHI   +        + +     L K   
Sbjct: 177 CVSMEVSSGGLQRHRVEHVDFDVAIFTNLSPDHIGPKEHPTFQNYLECKAKLFTLAKHGI 236

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             I  + A     +         +                      +     +    ++ 
Sbjct: 237 INIDDEHAQEIIDIATCDIETFGIKKQADIRATNIEYSKNLDSLGVKFVCETKNTAGNYY 296

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
              PG F +YNAL    +C  +G+   +  E L +  V  GR E +        I +DYA
Sbjct: 297 ICSPGMFSIYNALAVIAVCKYLGVKKEITREALTEAKVC-GRVEVLSVLPY-ATIIIDYA 354

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   SLE ILK +      R+I +FG  G R + +R  +G +A    D++I+T DNP  E
Sbjct: 355 HNGVSLENILKTLEHYDHKRLICLFGSVGGRTKIRRKELGDVASRECDLSILTSDNPDFE 414

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP +I  +I          +I + +R +A++ A+ M  + D++V+AGKGHET  ++  G 
Sbjct: 415 DPLEIIDDIAKSFDKAKSKYIVEPDRKKAVQLAVRMAREGDMIVLAGKGHETYQLIK-GV 473

Query: 480 KKMSVDCDIIREILGLIL 497
           K    + +I++E    IL
Sbjct: 474 KVPFSEREIVKEEARKIL 491


>gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
 gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
          Length = 505

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 137/509 (26%), Positives = 229/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++ K   +LI  +        + +I+ V+  S+ +  G++F A+ G + DGH FI 
Sbjct: 4   KLNDVLLKLDQDLIKYVK----GSLDLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI  G+  IV S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  MAIQNGSNVIVHSRDMDF------YSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +   GV +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSNMVKNGVQYAILESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS E       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSEFKNAVKKSFTYSLKSSQADFFVSFIDEKIDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I   D   +++ L  +  + GR +   
Sbjct: 292 EFYYKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLVCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+I+   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVAKRFLQGQISDIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +         +R +AI  AI +    D++VV
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVV 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREVFW-NEQEVVKNAI 498


>gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas
           maltophilia R551-3]
          Length = 502

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 150/493 (30%), Positives = 215/493 (43%), Gaps = 23/493 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L+               +   +  +  +  DSR ++ G  FVAI G    G  F+
Sbjct: 5   MLLSQLLPD-----------VALAGHDPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA A GA AI+           A + +    + V   R  +   A + +G     +  +
Sbjct: 54  EQARAAGAGAIL-----FEPPAPAELPAPVDAIAVPGLRARMGAMADQFHGAPSRAMAMV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S    + Q     G  S  IG          +    TTP  + +   L+ L
Sbjct: 109 GVTGTNGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQL 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V++E SSH LDQ R+D +      FTNL RDH+DYH    +Y  AK RLF   
Sbjct: 169 RDAGARAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRP 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K +   +             A      + S G     +  + +          ++++G
Sbjct: 229 GLKAAVINLDDAFGRQLFAGLPAGVQPIGLSSRGATDAIVRAEALQLDGRGIAFELAIDG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PL G F V N L  AG   A G   A + E L  L  + GR   +G       
Sbjct: 289 QRAAVQSPLLGRFNVDNLLAVAGTLHAQGQPLARIAEVLSALQPIRGRMNRLGGEDGLPT 348

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE  L ++     G +  VFGCGG+RD GKRP M  IA  LA+  IVTD
Sbjct: 349 VVVDYAHTPDALEQALDSLHGHLQGTLFCVFGCGGERDTGKRPQMAAIAERLANQVIVTD 408

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR ED + I A+I+ G         + +R  AI  A++  N  D++++AGKGHE    
Sbjct: 409 DNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRANAGDIILIAGKGHEPYQE 468

Query: 475 VTNGEKKMSVDCD 487
           V NG +    D +
Sbjct: 469 V-NGVRHDFDDTE 480


>gi|41408000|ref|NP_960836.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81414074|sp|Q73YQ3|MURE_MYCPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|41396354|gb|AAS04219.1| MurE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 520

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 152/479 (31%), Positives = 220/479 (45%), Gaps = 17/479 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  V+  ++ +  G +F A+ G    G     +AI +GA A++  +A   Q    T
Sbjct: 39  PDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERGAVAVLTDAAGVAQ---LT 95

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
               TP L+    R  L   A+ +Y    E   ++ +TGTSGK++    V+   + +G +
Sbjct: 96  GGRTTPTLLHPRPRSVLGQLAAAVYAHPSERLTVIGITGTSGKTTTTYLVESGLRAAGRT 155

Query: 144 SFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG        A   + LTTP    L   L+ ++ Q V  V +E SSH L   R+DG 
Sbjct: 156 AGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVMEVSSHALALGRVDGT 215

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G FTNL RDH+D+H T   YF AK  LF+   P  +   +   D  +   M     
Sbjct: 216 RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRAVVCIDDEAGREMAARAG 275

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGL 321
               V + G    +  ++        QQ T+             LPG + V N LVA  L
Sbjct: 276 DAVTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHRAGIRLPGHYNVANCLVALAL 335

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A+G+        L +   VPGR E +          VDYAH   +L  +L +++    
Sbjct: 336 LDAVGVSPEQAAPGLLQ-TRVPGRMEEIDAGQ-DFLALVDYAHKPGALRAVLSSLKR-PD 392

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
            R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDDNPR EDP  IR EI+ G+     
Sbjct: 393 RRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIRREILAGVTESGC 452

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +E G+R  AIR A+      DV++VAGKGHET        +    D   + E L 
Sbjct: 453 AAEVVEIGDRRAAIRHAVAWAGPGDVVLVAGKGHETGQRTGEHTR-PFDDRVELAEALR 510


>gi|118462627|ref|YP_881535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
 gi|254775003|ref|ZP_05216519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|167017295|sp|A0QF47|MURE_MYCA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|118163914|gb|ABK64811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
          Length = 520

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 153/479 (31%), Positives = 219/479 (45%), Gaps = 17/479 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  V+  ++ +  G +F A+ G    G     +AI +GA A++  +A   Q    T
Sbjct: 39  PDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERGAVAVLTDAAGVAQ---LT 95

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
               TP L+    R  L   A+ +Y    E   ++ +TGTSGK++    V+   + +G +
Sbjct: 96  GGRTTPTLLHPRPRSVLGELAAAVYAHPSERLTVIGITGTSGKTTTTYLVESGLRAAGRT 155

Query: 144 SFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  IG        A   + LTTP    L   L+ ++ Q V  V +E SSH L   R+DG 
Sbjct: 156 AGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVMEVSSHALALGRVDGT 215

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G FTNL RDH+D+H T   YF AK  LF+   P  +   +   D  +   M     
Sbjct: 216 RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRAVVCIDDEAGREMAARAG 275

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGL 321
               V + G    +  ++        QQ T+             LPG + V N LVA  L
Sbjct: 276 DAVTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHRAGIRLPGHYNVANCLVALAL 335

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A+G+        L +   VPGR E +          VDYAH   +L  +L +++    
Sbjct: 336 LDAVGVSPEQAAPGLLQ-TRVPGRMEEIDAGQ-DFLALVDYAHKPGALRAVLSSLKR-PD 392

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------ 435
            R+ VVFG GG+RD GKR  MG  A +LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 393 RRLAVVFGAGGERDPGKRAPMGATAAELADLVVVTDDNPRGEDPAAIRREILAGATESGC 452

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               IE G+R  AIR A+      DV++VAGKGHET        +    D   + E L 
Sbjct: 453 AAEVIEIGDRRAAIRHAVAWAGPGDVVLVAGKGHETGQRTGEHTR-PFDDRVELAEALR 510


>gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 486

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 137/500 (27%), Positives = 217/500 (43%), Gaps = 31/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +                    E +I  +  DSR  +A  ++  + G   DGH FI
Sbjct: 1   MKLSQMFEN---------------APEIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFI 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
              I +G + IV S           ++     + V+N  + L+  AS  YG     +   
Sbjct: 46  DDVIEKGVKCIVHSKPVD------DMKKGVAYIQVENVNRTLNRVASMFYGHPSRKMKVF 99

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTGT+GKS++ S ++ +        +    + +         LTTP  + + K +  + 
Sbjct: 100 GVTGTNGKSTITSIIRDVYSHFAPCGYIGTISISYGEVTLPPSLTTPDAVLIHKTMKDMV 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+  V++E SSHGL+  R+  +      F+NL  DH+D+H T + YF AK +LF   L
Sbjct: 160 EHGMQAVALEVSSHGLELGRVQSVDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTN-L 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            KE  A++ ADDAY  ++      +                + +       + T+    +
Sbjct: 219 KKEGVAVLNADDAYVDQLADATEASVVTYGIDN--HATYQAENIRIEKTGSRFTLVHGTE 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            ++    L   + +YN L A       GI     L +L  +  + GR E +        +
Sbjct: 277 RYEVSTNLVALYNIYNLLGAVAAMAESGIPIEQQLPYLHDIRQIEGRMERIDEGQL-FNV 335

Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VD+AHT + +E + +  + IT     II VFG  G RD  KR + G+IA    D  I+T
Sbjct: 336 IVDFAHTPDGMEKVFEYAKDITEDGHSIIAVFGSAGKRDTKKRRVFGEIASRYCDSIILT 395

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +D+PR EDP +I  EI  GI     I   +R  AIR AIE  N +D +++ GKG E    
Sbjct: 396 EDDPRDEDPREIANEIKSGISDTNNIFIADRYAAIRQAIESANVKDTVLILGKGDEVFMY 455

Query: 475 VTNGEKKMSVDCDIIREILG 494
              G +    D ++ R  + 
Sbjct: 456 REFGREPWMGDHNVARHCIR 475


>gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 498

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 128/506 (25%), Positives = 237/506 (46%), Gaps = 29/506 (5%)

Query: 1   MKLQ---DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           M+L    +L+     +++N  ++      + + + + SDSR ++   +F+ I G   D H
Sbjct: 1   MRLSQVIELLGNSVLQVVNPGNV------DPEFDHIESDSRGLKERNLFICIKGTNFDSH 54

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPE 115
           L   +   +GA A+V       ++         PI+ V ++R  + L       +     
Sbjct: 55  LIARELQRKGAVALVAEMPIEDEEVV------VPIVYVKSSRLVEALLTMEEYCHPYRKL 108

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKA 173
             + VTGT+GK+++ + +  +       +  IG    +   +   + + TTP P+ LAK 
Sbjct: 109 TTIGVTGTNGKTTITTLIYHVLSSFERKASLIGTVRNVVGENIYTNPKNTTPGPVELAKL 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L   +     +  +E SSH L  +R++G++   G  +N+ RDH+D+H T   Y+ +KM+L
Sbjct: 169 LQLSTKLKSEYFIMEVSSHSLSMNRVEGMRFDVGIISNVTRDHLDFHPTFDDYYRSKMKL 228

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L       +          +     +                ++ +         TI
Sbjct: 229 FSLLKTNGIAVVNGDKI----NIADIHISRNRITTYGFGDESDYRIENLDISRTGMDFTI 284

Query: 294 SVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT- 351
                    ++    GE   YN   A     ++  D   + + +     VPGRFEFV   
Sbjct: 285 QTPYGSSHRIYSRLIGEHNAYNIAAAVAALNSLNYDLDHIAKAISSFGGVPGRFEFVEEA 344

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              G  + VD+AHT ++LE +LK  R +T GR+I+VFG GG  D+GKRP+M +++   +D
Sbjct: 345 TKYGFDVVVDFAHTPDALEKLLKTARRLTPGRLILVFGAGGSADKGKRPLMSEVSSKYSD 404

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + I+T D+P+ +DP +I  ++  G+     ++   +R EAI  A+ + N+QD++++AG+G
Sbjct: 405 VVILTSDDPKLDDPAEILQDLESGVDKFKPYLVIPDRREAISVALTLANRQDMVLIAGRG 464

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE   I+   ++    D  ++++IL 
Sbjct: 465 HEDFQILGE-KRIPFNDKQVVKDILE 489


>gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 493

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 144/503 (28%), Positives = 224/503 (44%), Gaps = 29/503 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +LI      +   +          +I  V  D+  I  G  F+A  GN   G  +I
Sbjct: 1   MQIGELIKDWPCTMKGSIR--------VEIKRVEDDANLILPGDAFIARKGNNSSGISYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+ +GA AIVV       +         PI+ V N   F++  ++++Y    E   ++
Sbjct: 53  DSALEKGAAAIVVDDENYFNEADLP----VPIIWVPNCLSFIAYASAKIYNFPAEALTVI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKAL 174
           AVTGT+GK++V  F+ QI  +    +  IG           + +   LTT     +    
Sbjct: 109 AVTGTNGKTTVTHFIGQILNQLDKRAMVIGTNGVFIDREKCYPEMEALTTLQAKNIQFLF 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                  V +V +EASS GL++HRLD   +  G F N+  DHI+ H + + Y  +K    
Sbjct: 169 KEAIRLDVPYVVLEASSIGLEKHRLDHCDIDIGIFLNVTEDHIEDHGSFERYKLSKQI-- 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L   +   I   D      +  A          G        + +          I 
Sbjct: 227 ---LSTLAKKNIINSDDSVCRSIGLATKGKRIFFGKGSH-VDYFFQTLVDGPASTTCCIQ 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + +      PL G++Q  N L A      +    + +   +  L +  GRFE    N  
Sbjct: 283 HKKEKHIVNIPLVGDYQCSNVLAAISCIAQLDFPLSDICNTIGNLVLPEGRFE-HVENQL 341

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  I VDYAHT ++++MIL+ ++  T  R+IV+F CGG+RD+ KRP MG IA   AD  I
Sbjct: 342 GLSIVVDYAHTPDAMKMILQTLKKHTKRRLIVMFSCGGNRDKAKRPKMGMIASIYADYII 401

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DN R+E+P++I  +I  G      +IE  NR EAI  A+    K D +V+ GKGHE 
Sbjct: 402 LTTDNARNENPQQINKQIREGFSSTQEYIECLNRKEAIEHALNYAEKGDTIVLLGKGHEK 461

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              + + +K    D   +RE++ 
Sbjct: 462 TQQIGDKQK-YFSDLVFVREMIR 483


>gi|296129438|ref|YP_003636688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
 gi|296021253|gb|ADG74489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
          Length = 520

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 146/479 (30%), Positives = 215/479 (44%), Gaps = 26/479 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                V+  S  ++ G +FVA+ G K  G  F   A+A+GA A++        D  A + 
Sbjct: 37  LTFTGVTMSSTDVEPGDLFVAVPGLKVHGARFAADAVARGAVAVLTD-----DDGVAAVP 91

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA--SFVQQICQRSGLSSF 145
            + P+LV  + R      AS   G     ++ V  T          FV    +     + 
Sbjct: 92  PDVPVLVAHDPRSLAGPVASWALGNPASRLVTVGVTGTNGKTTTTYFVDAALRAHHARTA 151

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     I   A ++  TT     L   L+    +G   ++ E SSH L   R+ G + 
Sbjct: 152 VLGTVELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGALTTEVSSHALALGRVLGTRF 211

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL RDH+D+H   + YF  K RLF     +    +   DDA+ + + + A    
Sbjct: 212 DVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPEQARRGVVV--VDDAWGRRLAEEAAIPV 269

Query: 265 CRVLSV------GYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317
             V +             +    V       +  +            PLPG   V NA +
Sbjct: 270 ETVSTHVGAPEAAGATWAVVEADVGLDGVGSRFVLRGPDGARHVAHSPLPGLVNVSNAAL 329

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-VDYAHTSNSLEMILKNI 376
           A  L  A G+  A  +E +   H +PGR E V     G  +  VDYAHT ++L + L+ +
Sbjct: 330 AIVLAHAAGVPLATAIEAVGGAHAIPGRMERVVERGDGWPLCLVDYAHTPDALVLALEAV 389

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R IT GR+++VFG  GDRD+GKRPIMG+IA  LAD+ +VTD+NPRSEDP  +RA I+ G+
Sbjct: 390 RPITPGRLVIVFGSDGDRDRGKRPIMGEIAARLADVLVVTDENPRSEDPASVRAAILAGV 449

Query: 437 -------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
                      E  +R +AIR A+ +    D ++V GKGHE    +  G      D D+
Sbjct: 450 RDVRPDLADVHEATSRAQAIRDALRLAGPDDTVIVTGKGHEPTQEIA-GVFHRYNDRDV 507


>gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
 gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
          Length = 521

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 129/522 (24%), Positives = 226/522 (43%), Gaps = 44/522 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL+       +   +I P    +  I  ++ DSR ++ GW+FVAI G   DGH ++  
Sbjct: 5   LRDLL-------VGLETIGPPTDLDIPILGLAYDSRQVRPGWLFVAIRGFHVDGHQYVDH 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+     A  V+    ++ ++       P++ V ++R  L+  A+  Y     ++  +  
Sbjct: 58  ALK----AGAVAVVVDVRHWNGPTTLGVPLITVADSRVALAPLAANFYAHPAAHLRTIGI 113

Query: 123 TSGK------SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           T  K        V+  ++    R+G+ S                R +TP    +   L  
Sbjct: 114 TGTKGKSTTTDLVSQVLEGGGLRTGMISTVDFKIGARRWPNT-TRQSTPEAPEIQGLLHE 172

Query: 177 LSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY-------- 226
           +   G ++  +E++SH L    +RL  +      F N+  +H+DYH + + Y        
Sbjct: 173 MLDAGCSYAVLESTSHALSPYWNRLGNVYFDVAVFLNVTHEHLDYHGSFEQYRADKARLF 232

Query: 227 ------FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                  +       + + +   AI  ADD   +  +  A +   R+         +   
Sbjct: 233 AMLGEGQSEASCHQGDRVERPVWAIANADDPNCQFFLDAAPSYARRLTFGVRAAADVRAH 292

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V +  +   + ++    +      +PG F V NAL A  + ++ G+     +  LE + 
Sbjct: 293 AVASGPSGSHLRVTTPWGEAALHLQIPGSFNVSNALAALSVALSQGVPLERAITALEAVP 352

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            + GR + +        + VDYAH  +S E +L  +R +T GR+I VFG  G+RD+ KR 
Sbjct: 353 GIRGRMQPIHLGQ-PFDVIVDYAHNPDSFEQVLSMLRPLTKGRMIAVFGSAGERDRAKRS 411

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTA 452
           + G+IA   AD+ ++TD++PR EDP  I AEI+ G          G+    NR EAI  A
Sbjct: 412 VQGEIAGRYADLLVLTDEDPRGEDPAAIIAEIVEGAERAGKRVGDGYRCIPNRSEAIHVA 471

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           I      D++++ GKGHE   I  +G      + D+  + L 
Sbjct: 472 IAAAQPGDLVLLLGKGHEGSIIYASGAIPW-DEADVACQALR 512


>gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
 gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
          Length = 515

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 157/504 (31%), Positives = 239/504 (47%), Gaps = 23/504 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL  +   E             E  +  V+  S+ ++ G ++ A+ G +  G  F+P
Sbjct: 14  RLGDLADRLAAEPDAGTVNLRPGPSEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVP 73

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A   GA A++   A +    SAT ++  P+LVV + R  L   AS +YG       ++ 
Sbjct: 74  AAARAGAVAVLTDPAGA----SATAQAGLPMLVVPDPRAVLGDLASAVYGDPTAGLAVIG 129

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S A  V+   + +G  +  IG   T     A D+  TTP    L   L+   
Sbjct: 130 VTGTAGKTSTAYLVESGLRAAGHVTGLIGTVETRLGDLAMDSVRTTPEATDLHAMLAAAR 189

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GVT V +E SSH L   R+ G++   G +TN G DH+D+H     YF AK +LF+   
Sbjct: 190 ERGVTAVVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHVDSADYFAAKAKLFDG-- 247

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +    ++  DD   + + ++A        + G +        V      Q+ T+     
Sbjct: 248 -RCEVEVLNHDDPALRPLYRQAT---VTYSAAGDRSATWWADAVGGEGYAQRFTLHGPDG 303

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG   V NAL+A  + +A G+D+      +     VPGR E V       R
Sbjct: 304 LALPAGVALPGRHNVANALLAIAVLVAAGVDAKTAAAGVAACGGVPGRLELVR-APGPVR 362

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VDYAH ++++   L  +R   +GR  I + G GGDRD+GKRP+MG  A + AD+ +VT
Sbjct: 363 GVVDYAHKTDAIVAALAALREFGAGRRLICLLGAGGDRDRGKRPLMGIAAAEGADVVVVT 422

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DDNPR+E+P +IRAE++ G          +E   R  AI  A+ +    DV+ + GKGHE
Sbjct: 423 DDNPRTEEPAEIRAEVLAGAYRAGTDARVLEVPGRRAAIAEAVRLAEPGDVVALLGKGHE 482

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
               V +GE +   D   +   L 
Sbjct: 483 QGQEV-DGEVQPFDDRTELAAALR 505


>gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus opacus B4]
          Length = 524

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 155/524 (29%), Positives = 236/524 (45%), Gaps = 37/524 (7%)

Query: 1   MKLQDLIY---------KDFPELINQLSIFPMQWRERKI-NEVSSDSRH--IQAGWIFVA 48
           MK+ D +               L       P    E  I   V  D R   I  G +F A
Sbjct: 1   MKVTDGLRPAQPVRTTVSALAALAGARVEAPSGTAEHVIVTGV--DLRAQGIVEGDLFAA 58

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           + G +  G  F   A+ +GA AI+   A       + + ++ P+LV D+ R  L   ++ 
Sbjct: 59  LPGARAHGAEFAADALDRGATAILTDEAG--LALVSALGTDAPVLVHDDPRGVLGELSAT 116

Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTP 165
           +YG+  E +  + +TGTSGK++ +  V+     +G ++  +G     +S     + LTTP
Sbjct: 117 IYGRPSEKMQVIGITGTSGKTTTSYLVEGALNAAGRTTGLVGTIETRMSGRRVPSALTTP 176

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               L    + +  QG+  V +E SSH L   R+DG++   G+FTNL +DH+D+H+  + 
Sbjct: 177 EAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAFTNLSQDHLDFHRDFED 236

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AHNAGCRVLSVGYQGKFIH 278
           YF AK RLF       +   +   D      M                    G       
Sbjct: 237 YFAAKARLFAAESSVHAQHAVICVDDVWGRRMAEVARGAHSIVTTVATTPETGGAVWTAG 296

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              V A  +++    + EG   D    LPG++ V NA +A  LC  +G+D    +  +  
Sbjct: 297 PATVSASGSQKFALTTAEGTTLDVELRLPGQYNVANASLAVALCAVLGVDPRDAVAGIAG 356

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           + V PGR + +          VDYAH   ++E ++  +R    GR+ VV G GGDRD GK
Sbjct: 357 VDV-PGRVQRIDRGQ-DFLAVVDYAHKPAAVEAVIATLREQARGRVAVVVGAGGDRDAGK 414

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIR 450
           RP+MG  A   AD+ I+TDDNPR+EDP  IRA I  G             E  +R +AI 
Sbjct: 415 RPLMGAAAARGADLLIITDDNPRTEDPATIRAAIREGALGVPESERGQVWEVADRAKAIA 474

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            A+      DV++VAGKGHE    + +G K    D  ++ + + 
Sbjct: 475 DAVGWAQAGDVVLVAGKGHEIGQEI-HGVKYPFDDRAVLGDAIE 517


>gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 464

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 147/496 (29%), Positives = 231/496 (46%), Gaps = 42/496 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +  L+       I           + +I  +  +++  Q G +F+A+ G    G  +I
Sbjct: 1   MNISQLLANIVQTKI-----------DIEIKGLCLNAQSTQPGDLFIALQGKLTHGADYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILA 119
            QAI +G  AI+V S          I    P + +DN  ++L   A+  Y      NI++
Sbjct: 50  NQAIDKGCVAILVDSK--------EIECVIPSIRIDNLSQYLQTLANTFYKNAIKVNIIS 101

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK+SVA F+ Q+  + G+ +  IG         Q +  TTP  + L + L     
Sbjct: 102 ITGTNGKTSVAYFISQLLTKLGIKNGLIGTLGIT-HSQQLSLNTTPDILTLYQVLDNYYQ 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             + H  +E SSH L Q R+ G+ +    FTNL +DH+DYH T   Y   K +LF   L 
Sbjct: 161 NNIHHAILEVSSHALTQDRIAGLNIKQAIFTNLTQDHLDYHHTLDKYQATKEKLFV--LD 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  DD++ K  +    +      S+G       +          +    V+   
Sbjct: 219 TVESVILNQDDSHYKHFLNITKDKKRISYSLGDFDSIKTI----------EQGFLVQLDH 268

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + F  P  GEF + N L A     A+G     ++    +L   PGR +           +
Sbjct: 269 YVFEIPFLGEFNLLNILAALNSVEALGFKRDDIIPLFYQLLPPPGRMQR----IEPHLAW 324

Query: 360 VDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +DYAHT +++   +  ++      +I +VFGCGG+RD+ KR  MGKIA +LAD  I+T+D
Sbjct: 325 IDYAHTPDAIGNAITTLKKHYPNFKIRIVFGCGGNRDKDKRAEMGKIASNLADTIILTND 384

Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSE+P+ I   I+ GI          NR  AI TAI  L + + L++AGKGHET+   
Sbjct: 385 NPRSENPKTIIENILSGIDDSYKLDIIENRQLAIETAITTLKENECLLIAGKGHETIQQF 444

Query: 476 TNGEKKMSVDCDIIRE 491
           ++ +     D +I + 
Sbjct: 445 SD-KTIYLNDLEIAQN 459


>gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
 gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
          Length = 487

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 146/479 (30%), Positives = 237/479 (49%), Gaps = 16/479 (3%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P       I E++ DSR ++ G +F+A+ G ++DG + I       A A   ++    
Sbjct: 8   LLPAAESGVLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIAD-----AIARGAAAVAFE 62

Query: 80  QDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            + +A++ +++ +LV V      LS  A R YG+      ++ VTGT+GK+SV+  + Q 
Sbjct: 63  AEGAASMHADSAVLVPVKGLAGQLSAIAGRFYGEPSRALYLVGVTGTNGKTSVSQLLAQA 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
               G     +G        A +  + TTP P+ +   L+ L   G   V++E SSHGLD
Sbjct: 123 LDLLGQPCGIVGTLGNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLD 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  ++     FTNL RDH+DYH + +AY  AK +LF     +     +  DDA+ +E
Sbjct: 183 QGRVAALEFDVAVFTNLSRDHLDYHGSMEAYGAAKAKLFAWPNLRCRVINL--DDAFGRE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  + H +     S+     F++  +     +  +  +     +      L G F + N 
Sbjct: 241 LAAQTHESRLIGYSLNDADAFLYCSEAHFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNL 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L   G  + +      +L+ L +L    GR + +G   +   + VDYAHT ++LE +L+ 
Sbjct: 301 LAVVGALLGLDYALDEILKVLPQLQGPAGRMQRLGGGDKPL-VVVDYAHTPDALEKVLEA 359

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R    GR++ +FGCGGDRD+GKRP+M  +A  LAD+  VTDDNPR+E+P +I A+I  G
Sbjct: 360 MRPHVEGRLVCLFGCGGDRDRGKRPLMAAVAERLADVVWVTDDNPRTEEPAQIVADIRAG 419

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                       R +AI   +      DVLV+AGKGHE    +  G ++   D     +
Sbjct: 420 FAAPERVQFIHGRGDAIARLVAQAEAADVLVLAGKGHEDYQEIM-GVRQPFSDLIEANK 477


>gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 492

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 134/502 (26%), Positives = 217/502 (43%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L            + +I+++  DSR    G +FV IVG + D H F 
Sbjct: 1   MKLEQLLEGVPFTLAQGS-------LDTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
               A+G  A+V+     L            ++ V+++R  ++L ++ L+G     +  +
Sbjct: 54  ADCAAKGVSALVIQHDIDLSALP-----GVTVVKVESSRYAMALMSANLFGNPSRKMTMI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ + + +G     IG           +   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKETANTTPESYELQKTFREF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SS GL   R+ G+    G FTNL  DHI   + +        +     
Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGVHYNVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                      DD  ++ +++                      ++   H+   V   V G
Sbjct: 229 RCDVGVVN--IDDENTEALLEGHTCKLITYGRAEQADYRETGFELLRTHDFLGVKFHVTG 286

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K + D    +PGEF VYNAL A  +   +G+     +       VV GR E V  +    
Sbjct: 287 KDEMDVKVNMPGEFSVYNALAALAVGKVLGL-PDQAIHDGLGKCVVKGRVELVPISK-KF 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +AD +I+T
Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMADFSILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V GKGHE
Sbjct: 405 EDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G K   ++ +++ E 
Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485


>gi|225028091|ref|ZP_03717283.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
 gi|224954561|gb|EEG35770.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
          Length = 486

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 136/501 (27%), Positives = 222/501 (44%), Gaps = 27/501 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   L+       +           + K+  V +DSR I+ G +F+ I G   DGH F 
Sbjct: 1   MKCSQLLEHLEYTCLQGS-------TDVKVTAVVNDSRKIEEGCLFLCIKGAAFDGHKFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
                   EA    +A  + +    +  +  ++ VDNTR  ++L ++  +G   E    +
Sbjct: 54  A-------EAAEKGAAVLVVEDEVEVPDSVTVIKVDNTRYAMALISAAWFGYPAEELTTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT GK++    V+ + + +G     IG     I         TTP    +      +
Sbjct: 107 AVTGTKGKTTTTYMVKSLLEEAGHKVGVIGTIEVVIGQEHIPVNNTTPESYDIHSYFRKM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +    V +EASS G    R  GI    G FTNL  DHI     +   F   +    +L
Sbjct: 167 AEEDCDVVVMEASSQGFKLDRTAGIMFDYGLFTNLSPDHIG--PNEHKDFAEYLSCKAKL 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE- 296
             +        DD +  E+ K A                 +  ++    +   V   ++ 
Sbjct: 225 FNQCRYGYANIDDEHFAEITKNATCPIETFGLNENADLVAYDVELTRDRDFLGVDFGLKG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +      +PG F V+NAL A  +   +G+    + + L    V  GR + V T     
Sbjct: 285 TCEGKISCGVPGTFNVHNALGAISIAGHMGVTVEQMNKALRHFSV-KGRVQIVPTGY-DY 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + +LE IL  +R     R+I +FGCGG+R + +R  MG+++  LAD  I+T
Sbjct: 343 TLIIDYAHNAVALESILNTLRAYDPPRLISLFGCGGNRSKLRRYEMGEVSGKLADFTIIT 402

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            DNPR E+P+ I  +I+ G+      +I   +R EAI  A+      D++V+AGKGHET 
Sbjct: 403 SDNPRFEEPQAIIDDILIGMKKTDGEYISIIDRHEAISYAMHHAQPGDIVVLAGKGHETY 462

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  G+K    + +I++++L
Sbjct: 463 QEIE-GKKYHMSEEEIVQDVL 482


>gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 497

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 144/468 (30%), Positives = 218/468 (46%), Gaps = 19/468 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + SDSR ++ G +F  + G   DGH FI + +  G    ++       D         
Sbjct: 32  SRLCSDSRLVKPGDVFACVCGRHFDGHSFIMEGLRLGVAGFMIERPTDGLDN-------- 83

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             + V + R  +   A+RL G   +   ++AVTGT+GKS+ +  ++ +    G+ +  IG
Sbjct: 84  -WIQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKSTSSYMIRSVLSACGIKTGLIG 142

Query: 149 PT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                          TTP    L +    + + G     +E SSHGL Q R+ G      
Sbjct: 143 TVVYHDGDKETVADRTTPESTALQRLYESMIANGCGACVMECSSHGLVQGRISGSTYDGA 202

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL  +H+DYH T + YF AK  LF E L   +   +   D + +++  R  ++    
Sbjct: 203 LFTNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVISVNGCDPWGQKLAARFPSSLTWG 262

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L  G   +    +                        P+ G F V NAL AA LCI +G 
Sbjct: 263 LGDGADVRVKADRLTMKAGGSDFDLQVDGQFLGRVALPMTGRFNVENALGAASLCIGLGC 322

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               V++ LE +  VPGR E +   S G  + VD+AHT  +L  +L  +R +   R+I V
Sbjct: 323 SPEAVVKGLETMPQVPGRMERI-NLSNGVTVIVDFAHTEIALTNLLATLRPLA-KRLISV 380

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKG 443
           FG GG+R  G RP +GKIA   AD  IVT DNPR+EDP +I   I+ G+ G    F    
Sbjct: 381 FGHGGERFAGARPELGKIAGQTADRVIVTMDNPRNEDPAEIARAIVAGLEGGKASFSTVL 440

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +R +A+  A++   + DV+V++GKG E    +  G K    D D++ E
Sbjct: 441 SRRDAVFAALDEAERGDVVVISGKGAEPYLEIK-GVKYPYSDRDVVGE 487


>gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 495

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 151/474 (31%), Positives = 212/474 (44%), Gaps = 12/474 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  ++ +  DSR ++ G  FVAI G    G  F  QA   GA AI+       +  +  
Sbjct: 18  RDIAVSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPA 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  + V   R  L   A   +G       ++ VTGT+GK+S    + Q     GL 
Sbjct: 78  DA-----IAVPGLRSRLGAMADLFHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLR 132

Query: 144 SFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG          +    TTP  + +   L  L   G   V++E SSH LDQ R+DG+
Sbjct: 133 GGSIGTLGAGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGV 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                 FTNL RDH+DYH    +Y  AK RLF     + +   +  +             
Sbjct: 193 HYDVAVFTNLTRDHLDYHGDMASYGEAKARLFLREGLRSAVLNLDDEFGRVLAGRLAEGV 252

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V S G +G  +  + +          +S   +      PL G F V N L   G+ 
Sbjct: 253 RLVGVSSRGQEGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVGGVL 312

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+G   A V   L +L  V GR   +G +     + VDYAHT ++LE  L ++R     
Sbjct: 313 HALGDSVACVAAILSRLQPVAGRMNRLGGDGERPLVVVDYAHTPDALEQALASLRAHAGA 372

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
           R+  VFGCGG+RD+GKRP+M +IA   AD  +VTDDNPR ED + I A I+ G       
Sbjct: 373 RLTCVFGCGGERDRGKRPMMARIAEQHADRVVVTDDNPRGEDGDAIVAGIMAGFAAPEAV 432

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             + +R  AI  AI     QDV++VAGKGHE    +  G +    D ++ R  L
Sbjct: 433 QVERDRALAIARAIARSGAQDVVLVAGKGHEPYQEIA-GVRHPFDDTEVARAAL 485


>gi|94501901|ref|ZP_01308411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
 gi|94425954|gb|EAT10952.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
          Length = 490

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 143/490 (29%), Positives = 233/490 (47%), Gaps = 17/490 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I     + + +     +  + + +N +  DSR ++ G   + +     D   +I QA+ +
Sbjct: 4   IGTSIVKWLGKQCPAELLGQAQTLNRIVFDSRDVEDGDALIVLPSVAGDEAAYIEQALEK 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
            A  ++    YS  +             V +   F +   +   G   +++  + VTGT+
Sbjct: 64  RAVLVIGEIEYSAHN----------YCRVSDVMTFAASVLNHELGSPSQHMDVIGVTGTN 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKSS+  +V Q+      S   +G               T  P+           +    
Sbjct: 114 GKSSIVFYVAQLLTELRHSCAVMGTLGYGFWNDLKPTGMTTLPLPRLHQALADVKKDCKA 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +++E SSHGL Q RL G+      FTNL RDH+DYH T  AYF+AK  LF+E   +   A
Sbjct: 174 IAMEVSSHGLHQKRLSGVAFNGAIFTNLSRDHLDYHGTMDAYFDAKRLLFKEPGLQW--A 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I  DD Y K+++    +          +    H          QQ+ +   G++ +   
Sbjct: 232 VINQDDDYGKKLLSEPVSYSSYSYGTDEKSDL-HFCITRTTDTGQQLALRFHGQEQEVFL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL GEF  YNA  +    IA+G D +   + +  L  V GR E + +N     + VDYAH
Sbjct: 291 PLLGEFNAYNAAASVLSVIAMGFDFSSACKAVTALRPVSGRMELIDSNDSQPNVLVDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T +++E +LK+ R    G ++ + GCGGDRD+GKRP+M + A++ AD  ++T DNPRSE 
Sbjct: 351 TPDAVEQVLKSARKHCKGNLVCLVGCGGDRDRGKRPLMAQAAINFADSVLLTSDNPRSES 410

Query: 425 PEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           PE+I A+++ G+      + +R +AI++AI      D++V+ GKGHE    + +G K   
Sbjct: 411 PEQILADMVQGLKKEVPSELDRKQAIQSAILNAKSDDLIVIVGKGHEDYQEI-HGVKYPF 469

Query: 484 VDCDIIREIL 493
            D +  RE L
Sbjct: 470 SDQETAREAL 479


>gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 485

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 176/481 (36%), Positives = 256/481 (53%), Gaps = 13/481 (2%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
              P++     +   + D R +  G +F A  G + +G  FIP        A + + A +
Sbjct: 13  DPVPVECDGIDVTGFAIDHRKVAPGTVFGAFPGARVNGEDFIP--------AAIAAGAVA 64

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           +      +      +     R+  +  A+  +   PE ++AVTGT+GK+S     +QI +
Sbjct: 65  VVARPEAVVEGAVHIPDAEPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWR 124

Query: 139 RSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +G  S  IG    T +  +    +TTP  +     +S L+ +G+TH++ EASSHGLDQ+
Sbjct: 125 MAGHRSASIGTLGVTTADESISTGMTTPDIVTFLANVSGLAREGITHLAYEASSHGLDQY 184

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R +G  + AG+FTNL RDH+DYH + +AYF AKMRLF+E++ +   A+++ADD +S   +
Sbjct: 185 RSEGPVVAAGAFTNLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAI 244

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             A     RVL+VG +G+ I L         QQ+ +  EG+      PL G +Q  NALV
Sbjct: 245 DHARRRALRVLTVGERGETIRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALV 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +AGL +A G D     + L +L  V GR E       G  +YVDYAHT +++      +R
Sbjct: 305 SAGLVLATGGDPTQTFDALGRLQPVRGRLERAAITRTGAPVYVDYAHTPDAITAACAALR 364

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               GR+IVVFG GGDRD GKR  MG  A   AD+ IVTDDNPR EDP  IRA ++ G  
Sbjct: 365 PHVEGRLIVVFGAGGDRDPGKRGPMGAAACAGADLVIVTDDNPRGEDPAAIRAAVLAGCT 424

Query: 438 GFIEK-GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG---EKKMSVDCDIIREIL 493
           G   + G+R  AI  AI    K D+++VAGKGHE   ++  G         D  ++RE  
Sbjct: 425 GVARETGDRRAAIAEAIAQAGKGDIVLVAGKGHEQGQVIGRGDAARTLPFDDVAVVRECT 484

Query: 494 G 494
           G
Sbjct: 485 G 485


>gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
          Length = 496

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 148/489 (30%), Positives = 216/489 (44%), Gaps = 13/489 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL     Q R+  I+ +  DSR +Q G  FVA+      G  FI  A A+GA AI+  
Sbjct: 7   LAQLLPDIPQARDVVISGLVMDSREVQPGDAFVALARFGAHGLCFIEDACARGAVAILFE 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                             + V   R  L   A R +G   +   ++ VTGT+GK+S    
Sbjct: 67  PPAPQGVSVPDGA-----IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQL 121

Query: 133 VQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + Q   R G+ S   G                TTP  + L + L  L   G   V++E S
Sbjct: 122 LAQAWHRLGVRSATCGTLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVAMEVS 181

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH LDQ R+DG+      FTNL RDH+DYH   + Y  AK RLF     + +   +    
Sbjct: 182 SHALDQGRVDGVHYDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQGVQAAVINVDDLF 241

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                           V + G+    +  + +          + +         PL G F
Sbjct: 242 GLRLLHGLAKGVRRVGVSACGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRF 301

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L  AG+  A+    + +   L  L  + GR   +G       + VDYAHT ++L 
Sbjct: 302 NVDNLLAVAGVLYALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQPMVVVDYAHTPDALG 361

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L ++ +   GR+I VFGCGG+RD+GKR  M  IA   AD+ +VTDDNPR ED + I A
Sbjct: 362 QVLSSLSSHVCGRLICVFGCGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVA 421

Query: 431 EIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I+ G         + +R  AI  AI + +  DV+++AGKGHE    V  G +    D +
Sbjct: 422 DILAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKGHERYQEVA-GVRHPFDDTE 480

Query: 488 IIREILGLI 496
           +   +L  +
Sbjct: 481 VAMRVLAAM 489


>gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 501

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 158/507 (31%), Positives = 247/507 (48%), Gaps = 35/507 (6%)

Query: 1   MK--LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK  L+D++ K     ++ L I      +  I  +S  S+ IQ   IFVA  G   DGH 
Sbjct: 1   MKKRLKDILKK-----VDVLKIVGKNTSKL-IERISMYSKIIQKNMIFVAKKGKTTDGHE 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           FI  AI  GA  IV           ++I      ++V ++   L + +S  Y    + I 
Sbjct: 55  FITNAIQNGAHTIVCEK------IPSSIHKKITYVLVPDSMNALGIISSNFYDHPTKKIK 108

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
            + +TGT+GK+SVA+ + Q+  + G  +  I        S       TTP+ I + K L+
Sbjct: 109 LIGITGTNGKTSVATILHQLFSKMGEKNILISTMGIQILSKKYPTTHTTPNIIEINKYLN 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +G  +  +E SSHG+ Q R+ G+    G FTN+  DH+DYH++   Y + K   FE
Sbjct: 169 LSIRKGCKYAFMEVSSHGIHQKRIAGLLFQGGVFTNITHDHLDYHESFDHYLSTKKFFFE 228

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L K++ A+I +DD  S +++K       +    G +       ++          +  
Sbjct: 229 N-LSKKAFALINSDDENSYKIIKDIL---SKTYFYGLKKNANFKIQILKESIHGSQLLID 284

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F     L G F VYN L      I +G     +L+ ++ +  + GRFE   +NS G
Sbjct: 285 GHKIF---TKLIGTFNVYNLLAGYATAILLGKKKDNILKKIKNIKPIRGRFEQFISNS-G 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            R+ VDYAH  + L+ +L  ++ I +  G++I V GCGG+RD  KR +MGKI  +  D++
Sbjct: 341 IRVIVDYAHNPDGLKTVLNTLKKIKNDDGKLICVIGCGGNRDIKKRSLMGKIVYETCDVS 400

Query: 414 IVTDDNPRSEDPEKIRAEII-------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I T DNPR ED EKI  ++              +   NR +AI TAI++  K+D++++AG
Sbjct: 401 IFTSDNPREEDREKILVDMKNFKSSIYKDKESILTFVNRKKAIETAIQIAKKKDIILIAG 460

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHET   +  G +    D  I + +L
Sbjct: 461 KGHETYQEIK-GIRFPFNDMKIAQYLL 486


>gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 488

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 146/497 (29%), Positives = 232/497 (46%), Gaps = 30/497 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L+     E +              I  ++++S+ ++ G +F+AI G   DGH FI
Sbjct: 1   MLLRHLLDILEYEELYGSDA-------VDITGITNNSKTVKPGDLFIAIAGYSIDGHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENIL 118
            QAIA GA+A++       Q        + P + V ++RK L+L A R Y    +   ++
Sbjct: 54  DQAIAAGAKAVIGEKEIGKQ--------SVPYIKVTDSRKALALAAKRFYKNEQNKAIMI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176
            +TGT+GK++ +  ++ I +  G +    G                TT   + L K L+ 
Sbjct: 106 GITGTNGKTTTSYMLKHILETCGHTCSLFGSVQNIVNGQVLPATTNTTMDALELQKQLAA 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   V +E +SH L QHR+ GI+   G FTNL +DH+DYH + +AYF AK+RLFE+
Sbjct: 166 ---SNDQVVIMEVTSHALMQHRVYGIEFDYGLFTNLSQDHLDYHGSMEAYFGAKLRLFEQ 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L P     I    +     +          + ++G     + L  V       Q T++ +
Sbjct: 223 LAPAGKAVIQAQGEWGEAFLASLKQRDVPYIYTLGGAEATLQLSNVRI-ERPMQATLAED 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K +D   PL GE  VYNA +A      +G+++  +L  LEK   VPGRFE +    +G 
Sbjct: 282 HKAYDLKVPLLGEHNVYNAAIAFLTARLLGLNARKILAALEKFPGVPGRFELIHH-PKGA 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAHT ++    LK    +++ RII VFG  G+RD  KR  M  ++   +D  I+T
Sbjct: 341 NIVIDYAHTEDAFYHCLKTAEELSARRIIHVFGFRGNRDTSKRQAMVNVSKRFSDFIILT 400

Query: 417 DDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV-H 473
            D+   E  E++R ++ +       +   +R  AI  A E+    D + + GKGHE    
Sbjct: 401 MDDLNGESFERMRKKLENYQLGENGVVIPDRTSAIAHAWELAENGDWVFITGKGHEAYRQ 460

Query: 474 IVTNGEKKMSVDCDIIR 490
                      D D ++
Sbjct: 461 SY---HLPTQSDKDTVQ 474


>gi|162148956|ref|YP_001603417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545291|ref|YP_002277520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787533|emb|CAP57129.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532968|gb|ACI52905.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 487

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 194/490 (39%), Positives = 263/490 (53%), Gaps = 14/490 (2%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +++    +      +  I  V++DSR +  G +FVAI G + DG        +    A
Sbjct: 5   LSQVLAAAGLSAPPGADPAITGVTADSRRVTPGMLFVAIPGTRADG--------SAFIPA 56

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            + + A ++     T     P++ VD  R+ L+L A+ L G  P++++AVTGT+GK+S  
Sbjct: 57  AIAAGAAAIVAPRGTPAPGVPVIGVDEPRRALALLAAFLAGAQPDHVVAVTGTNGKTSTV 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFA---QDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            F++QI       +  IG    I+          LTTP  + LA  L+ ++  GVT V++
Sbjct: 117 DFLRQIWGHQHRRAASIGTLGVIADIDLPDCGPVLTTPDSVGLATLLAAMARGGVTDVAI 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE--SPAI 245
           EASSHGLDQHRLDG++L A  FTNL RDH+DYH T  AY  AK+RLF+ LLP +    A 
Sbjct: 177 EASSHGLDQHRLDGLRLSAAGFTNLTRDHLDYHGTLDAYRAAKLRLFDTLLPPDGLMAAN 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D A    +   A   G  +  VG  G  I L     +   Q + I+  G   D +  
Sbjct: 237 ADMDTATLDALRDIAARRGLDLRLVGEAGDAIRLLGSTPLPEGQHLRIASGGVARDIVLA 296

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG FQ  NAL+AA L        A  ++ L  L  V GR E       G   YVDYAHT
Sbjct: 297 LPGRFQADNALLAAALAAPGADGLARAIDLLPALRGVRGRMERAALLPNGAAAYVDYAHT 356

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++L  +L  +R   SGR+I VFG GGDRD+GKRP+MG+ A   ADIAIVTDDNPR+EDP
Sbjct: 357 PDALARLLDALRPHASGRLIAVFGAGGDRDRGKRPLMGQEATRRADIAIVTDDNPRTEDP 416

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             IR E++ G PG IE G+R  AI   + ML   DVLVVAGKGHE    +         D
Sbjct: 417 AFIRGEVLAGAPGAIEIGDRARAIAEGLSMLRAGDVLVVAGKGHEQGQTIGTAT-LPFDD 475

Query: 486 CDIIREILGL 495
             +IR++ G+
Sbjct: 476 ASVIRDLAGV 485


>gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
 gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
          Length = 476

 Score =  276 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 181/494 (36%), Positives = 253/494 (51%), Gaps = 22/494 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L      E             +  +   + D R +  G IF A  G + +G  FI
Sbjct: 1   MKLNQLDQSITGE-----------GGDALVTGFAIDHRKVAPGTIFGAFQGARVNGEDFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A+V                    +  D  R   +  A+  +   P   +AV
Sbjct: 50  ADAVRSGAIAVVT--------RPGVTVEGAVHIASDEPRAAFAQLAAAFFAPFPATAVAV 101

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ + +G  +  IG    T +       LTTP  +     ++ L+ 
Sbjct: 102 TGTNGKTSTVEMTRQLWRMAGHHAASIGTLGVTTADERTYTGLTTPDVVTFLSNVAGLAR 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH++ EASSHGL Q+R +G+++ A +FTNL RDH+DYH    AY  AKMRLF E+L 
Sbjct: 162 EGVTHLAFEASSHGLTQYRTEGLEVSAAAFTNLSRDHLDYHGDMGAYLAAKMRLFSEVLS 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+++ADD  S  V+  A   G R+++VG +G  + L +       Q + I  E   
Sbjct: 222 PTGTAVVWADDVQSGRVIDLARARGNRLMTVGTRGSTLKLVERHPTLLGQGLVIEDEHGT 281

Query: 300 FDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G +Q  NALV+AGL +A G D    L +L +L  V GR E       G  +
Sbjct: 282 IHKVQLPLIGAYQAANALVSAGLVLATGGDVTTTLANLSRLQPVRGRLERAAIARSGAPV 341

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           YVDYAHT ++LE  +  ++    GR+IVVFG GGDRD GKR  MG++A   AD  IVTDD
Sbjct: 342 YVDYAHTPDALEAAIAALKPHAGGRLIVVFGAGGDRDPGKREAMGQVASMQADRVIVTDD 401

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           NPR+EDP  IR +++ G  G IE G+R EAI  AI     QD++++AGKGHE   IV + 
Sbjct: 402 NPRTEDPAAIRTQVMRGATGAIEIGDRREAIAAAIAEAGGQDIVLIAGKGHEQGQIVGDL 461

Query: 479 EKKMSVDCDIIREI 492
                 D  + RE 
Sbjct: 462 V-LPFDDVAVAREC 474


>gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 487

 Score =  276 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 130/484 (26%), Positives = 211/484 (43%), Gaps = 16/484 (3%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS+      + +I  + +DSR IQ   ++  + G   DGH F+ + + +GA  IV +  
Sbjct: 2   KLSLLFENAPDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAKD 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134
                           + V+N  + L++ AS+ YG       +  VTGT+GKS++ S ++
Sbjct: 62  IETMH------KGVAYIKVENVNRTLNMVASKFYGHPSHQLTVFGVTGTNGKSTITSIIK 115

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +        +    + +         LTTP PI +  ++  +   G+  V++E SSHGL
Sbjct: 116 DVYSHFKPCGYIGTISISYGDVTMPPSLTTPDPILIHHSMKDMVDYGMQAVALEVSSHGL 175

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  R+  +      FTNL  DH+D+H T + YF A        L  +  A+I  DD ++K
Sbjct: 176 EMGRVQSVDFDVAVFTNLTYDHLDFHGTLENYFEA-KHKLFLQLKSDGVAVINVDDPFAK 234

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            ++                        +    N     +   G+ +     L   + +YN
Sbjct: 235 RMVAGCKAHIVSYGVTADAD--YRGDNIHIGTNGSTFDLIHHGETYTITTNLVAMYNIYN 292

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A       G+    ++ +L +L  V GR E +        + VD+AHT + +E + +
Sbjct: 293 LLGAIAAMCESGVALKEIVPYLSELTQVDGRMERIDEGQA-FNVIVDFAHTPDGMEKVFE 351

Query: 375 NIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              +IT     II VFG  G RD  KR + G+IA    D  I+T+D+PR E+P  I  EI
Sbjct: 352 FANSITPDGNAIIAVFGSAGKRDTKKRKVFGEIADRYCDSIILTEDDPRDENPRDIANEI 411

Query: 433 IHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
             GI     I   +R  AIR AIE  N  D +++ GKG E       G +    D    R
Sbjct: 412 KGGIKDTNNIFIEDRYSAIRQAIESANVNDTVLILGKGDEVFMYREFGREPWIGDHIAAR 471

Query: 491 EILG 494
            ++ 
Sbjct: 472 HVIR 475


>gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 486

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 141/500 (28%), Positives = 224/500 (44%), Gaps = 31/500 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +                    + +I  +  DSR  +A  ++  + G   DGH FI
Sbjct: 1   MKLSQIFEN---------------APDIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFI 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
              IA+GA+ IV S           ++     + V+N  + L+  AS  YG    N+   
Sbjct: 46  EDVIAKGAKCIVHSKPVE------HMKKGIAYIQVENVNRTLNRVASLFYGHPSRNMKVF 99

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTGT+GKS++ S ++ +        +    + +         LTTP  I + K +  + 
Sbjct: 100 GVTGTNGKSTITSIIKDVYSHFAPCGYIGTISISYGEVTLPPSLTTPDAILIHKTMKDMV 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+  V++E SSHGL+  R+  +      F+NL  DH+D+H T + YF AK +LF   L
Sbjct: 160 DAGMQAVALEVSSHGLELGRVQSVDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTN-L 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+  A++ ADDAY  ++                       + +       + T+  +G+
Sbjct: 219 KKDGVAVLNADDAYVDQLADATDARVVTYGI--DHHASYQAENIRIEKTGSRFTLVHDGE 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            ++ +  L   + +YN L A       GI  A  L +L ++  + GR E +        +
Sbjct: 277 HYEVVTNLVALYNIYNLLGAVAAMAESGIPIAKQLPYLNEIRQIEGRMERIDEGQL-FNV 335

Query: 359 YVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VD+AHT + +E + +  + IT     II VFG  G RD  KR + G+IA    D  I+T
Sbjct: 336 IVDFAHTPDGMEKVFEYAKDITEEGHSIIAVFGSAGKRDTKKRKVFGEIASRYCDSIILT 395

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +D+PR EDP +I  EI  GI     I   +R  AIR AIE  N +D +++ GKG E    
Sbjct: 396 EDDPRDEDPREIANEIKSGISDTNNIFIEDRYAAIRQAIESANMKDTVLILGKGDEVFMY 455

Query: 475 VTNGEKKMSVDCDIIREILG 494
              G +    D ++ R  + 
Sbjct: 456 REFGREPWMGDHNVARHCIR 475


>gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
 gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
          Length = 494

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 213/477 (44%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++++++DSR  + G IFVA  G   D H F    I QG   +VV+    L+      
Sbjct: 20  DKNVDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQGCSIVVVNRELELEG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 ++V +T +  SL A  L+           VTGT+GK+S+A+ +  I ++   +S
Sbjct: 75  --EVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDANAEAMTMEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S  +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDEFSHYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              K +       +  +S    D+    P  G F + N + A  
Sbjct: 253 PYEVFTYGIDNEAQFM--AKNINESLQGVEFDLSTPFGDYRVKSPYVGRFNISNIMAAII 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + G     ++  +  L  V GR E +  +     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGASMEEIINAVTSLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVKPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHDN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           ++E  +R E IR AIE+    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YVEFDDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 482

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 182/511 (35%), Positives = 264/511 (51%), Gaps = 50/511 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  ++           + +P+   +  +   + D R +  G +F A  G + +G  FI
Sbjct: 1   MKLGAIL---------DAAGYPVAAADANVTGFAIDHRKVAPGTVFGAFPGTRFNGEDFI 51

Query: 61  --------------PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
                         P+A+ +GA  +   +       +   +   P+              
Sbjct: 52  ADAVKAGAVAVVARPEAVVEGAVHV-ADAEPRRAFAALAAQFFQPV-------------- 96

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTP 165
                  PE ++AVTGT+GK+S     +QI + +G S+  IG    T +  +    LTTP
Sbjct: 97  -------PETVVAVTGTNGKTSTVEMTRQIWRMAGRSAASIGTLGVTTADESVSTGLTTP 149

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             +     ++ L+ +GVTHV+ EASSHGL Q R +G+++IAG+FTNL RDH+DYH T + 
Sbjct: 150 DIVTFLSNMTGLAREGVTHVAYEASSHGLSQFRNEGLRVIAGAFTNLSRDHLDYHPTMED 209

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           YF AKMRLF+ ++     A+++ DD +S   ++     G R+LSVG QG+ I L      
Sbjct: 210 YFAAKMRLFDHVVDDGGVAVVWMDDEWSGRAVEHVRRRGLRLLSVGEQGETIRLLARTPT 269

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              Q + ++ +G       PL G +Q  NALV+AGL IA GID+  V + L +L  V GR
Sbjct: 270 QLGQVLEVAFDGARRKISLPLIGAYQAANALVSAGLAIASGIDAGQVFDALARLQPVRGR 329

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E    N  G  +YVDYAHT +++E  +  +R    GR+I VFG GGDRD+GKRP MG+ 
Sbjct: 330 LERAAINRAGAPVYVDYAHTPDAIEAAIAALRPHVKGRLITVFGAGGDRDEGKRPEMGRA 389

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A   +D+ IVTDDNPR EDP  IRA I+ G      E G+R  AI  AI    + D+++V
Sbjct: 390 ACAGSDLVIVTDDNPRGEDPAAIRAAIMAGCADNAREIGDRRSAIAAAIAEAGRDDIVLV 449

Query: 465 AGKGHETVHIVTNG---EKKMSVDCDIIREI 492
           AGKGHE   I+  G         D  + RE 
Sbjct: 450 AGKGHEQGQIIGRGDAMRVLPFDDVQVAREC 480


>gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 494

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 129/477 (27%), Positives = 215/477 (45%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++++++DSR  + G IFVA  G   D H F    I QG   +VV+    L+      
Sbjct: 20  DINVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCRIVVVNRELELEG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  SL A  L+           VTGT+GK+S+A+ +  I ++   SS
Sbjct: 75  --DVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKSS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +     +G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S  +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSGYLANVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              K +       +  +S    D+    P  G F + N + A  
Sbjct: 253 PYEVFTYGIDNEAQFM--AKNINESLQGVEFDLSTPFGDYHVKSPYVGRFNISNIMAAII 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + G     ++  +  L  V GR E +  +     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGATMEEIINAVTSLEPVEGRLEVLDPS-LPIDLIIDYAHTADGMNKLIDAVQPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHDN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           ++E  +R E IR AI++    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YVEFDDRAEGIRHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 506

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 137/502 (27%), Positives = 212/502 (42%), Gaps = 22/502 (4%)

Query: 12  PELINQLSIFPMQWRERKINEVSS---DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           P  + +++ F  + +      +S+   DSR +    +F A  G+  DG  F+ +A  QGA
Sbjct: 7   PRTLQEVAAFLEEDKNVGTCSLSTLEEDSREVLKNSLFYAHKGHTVDGFDFMLKAQEQGA 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
            AI+                  P+L +         FAS  Y      +  + +TGT+GK
Sbjct: 67  AAIICDYDKD-PSAEQLKDVTIPLLHLKKGMSV-GEFASWFYFSPSSKLRLIGITGTNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           S+V   + Q            G          + +  TT S I L KAL+    +G  + 
Sbjct: 125 STVTQLIAQYLALFNRKCAVFGTLGYGFLPNLKQSSNTTLSAIALQKALAEAVKEGADYA 184

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SS G+ + R+DG     G+FTNL RDH+DYH+T + Y  AK      + P      
Sbjct: 185 ALEVSSIGVCEGRIDGCIFSGGAFTNLTRDHLDYHKTMENYAKAKREFLNRVNPDHLCLN 244

Query: 246 IYADD-------AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +                +                +   +++  +   H+  ++ I     
Sbjct: 245 VDDAMGKTVATLKPEAILFSPKGALAVNSPDKSVKHALLNVTGIEYKHDGLKLRIDSSFG 304

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    L G F   N L A  + ++       +L+   +L  + GR E         R+
Sbjct: 305 KGDASLSLLGSFNAENFLCALSVLLSFHFPLKDLLDKASQLKPICGRME-CFYKEGKPRM 363

Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            VDYAHT + +E  LK  R+ T G ++  V GCGGDRD+GKRP+M   A   AD  I T 
Sbjct: 364 IVDYAHTPDGVESALKAARSHTPGGKVWCVLGCGGDRDKGKRPMMAIKACVYADKVIFTS 423

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           DNPR+EDP +I  ++  G+      +     R +AI  A +     D +VVAGKGHE   
Sbjct: 424 DNPRTEDPVRILEDMESGVKGSADNYECIVKREDAITKAFKEAQSADCVVVAGKGHEDYQ 483

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
           I+    K    D + +  +L L
Sbjct: 484 IIG-KVKHHYSDREFVMSLLDL 504


>gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
 gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
          Length = 494

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 126/467 (26%), Positives = 209/467 (44%), Gaps = 19/467 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L+      
Sbjct: 20  DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLKG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T +  SL A  LY           VTGT+GK+S+A+ +  I ++   +S
Sbjct: 75  --NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLTLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S  +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              K +       +         F    P  G F + N + A  
Sbjct: 253 PYEVFTYGI--THEAQFMAKNIKESLQGVEFEFCTPFGSFPVRSPYVGRFNISNIMAAMI 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + G +   ++  + +L  V GR E +  +     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGTNLNEIINAVTELEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVKPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHEN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           +IE  +R E IR AI++    D +V+A KG E   I+    K    D
Sbjct: 429 YIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD 475


>gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 518

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 144/497 (28%), Positives = 236/497 (47%), Gaps = 18/497 (3%)

Query: 7   IYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           I   F E ++ L   +      + ++ EV  DSR    G +FV + G+  D H F+ + I
Sbjct: 21  IMAKFSEWLDGLDYELLHGDPEKVEVGEVIYDSRKAGRGSVFVCMRGSTTDSHSFLQKVI 80

Query: 65  AQGAEAIVVSSAYS-LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121
           A+G EAIVV    S L      I     ++ V ++R+ L+  ++  +G       ++AVT
Sbjct: 81  AEGTEAIVVEEESSMLPVDLREIYEGIAVVRVPSSREALAKLSAARFGFPSREMRVIAVT 140

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQ 180
           GT GK++ A  ++ I + +G S   IG T    +   +  + TTP    L      ++ +
Sbjct: 141 GTKGKTTTAHMIRSILESAGESCGLIGTTGVDYAGIHEETKNTTPESYELQDLFRRMADR 200

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  +V +EASS G   +R D I    G FTN+  DHI      +     + + ++  + +
Sbjct: 201 GCGYVVMEASSQGFKLYRTDAIDFDYGIFTNIEPDHIGP---NEHKDFEEYKYYKSRIFR 257

Query: 241 ESPAIIYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           +S   +   D+   E  +        C  +          ++ V +          +   
Sbjct: 258 QSRVGLINRDSPYAEELIAGAKCRMYCFGIDKSADFMAEGIQAVNSPDFVGSEFQVIGMA 317

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    LPG++ VYNA+ A  +C  IGI ++ +L+ L  L  V GR E    N     +
Sbjct: 318 KLDVRLNLPGKYNVYNAMAAISVCSLIGIRNSAILKALR-LIRVNGRMELAFKNDT-MSV 375

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH +  +E +L+ +R     R++VVFGCGG+R + +R  MG+ A  LAD +++T D
Sbjct: 376 IVDYAHNAMGMENLLETLREYHPKRLVVVFGCGGNRSKERRYGMGETAARLADFSVLTAD 435

Query: 419 NPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           N R E  E I ++I   +      + E  +R EAI  A++   K D++ V GKGHE  + 
Sbjct: 436 NSRFERTEDIISDIKSRLVPLGGRYAEIPDRREAIEYAMKNAEKGDIIAVIGKGHEDYNE 495

Query: 475 VTNGEKKMSVDCDIIRE 491
           V NG +   +D ++I E
Sbjct: 496 V-NGARTHFLDREVIEE 511


>gi|283850519|ref|ZP_06367807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
 gi|283574090|gb|EFC22062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
          Length = 487

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 149/466 (31%), Positives = 236/466 (50%), Gaps = 16/466 (3%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           S  +  G +FVA+ G   DG  FIP A+A+GA  +V      L   +        ++V +
Sbjct: 28  SAKVLPGGVFVAVAGPVADGERFIPDALARGAAHVVAGPGTVLPAGATAR-----LVVAE 82

Query: 97  NTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-I 153
           N +  L   A+  YG  +    + A+TGT+GK+++   ++++   +G     +G  +   
Sbjct: 83  NPKAALGRLAAARYGTDRMAMPVAAITGTNGKTTITYLIERLATAAGRKVGVLGTVAYRW 142

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
              +++  LTTP  + + + L+ + + G     +EASSH + Q RL G+   AG FTNL 
Sbjct: 143 PGVSRNASLTTPDCLTIHENLAAMHAAGCDLAVMEASSHAIAQDRLAGLAFAAGIFTNLT 202

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           +DH+DYH+  ++YF AK  LF   L     A++  DD + + +++    A    L+    
Sbjct: 203 QDHLDYHKDMESYFEAKAGLFRRYLADPRNAVLNFDDPFGRRLLEEFPQALGYGLTAPPA 262

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           G    L      H ++   + V   D       P+PG     N L A G  + +G+ +A 
Sbjct: 263 GFPRILAGTVLGHGREGQRLDVRHGDAAHAVASPMPGRHNAQNVLAAMGAALVLGLPAAA 322

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
                +  H  PGR E +  N R   ++VDYAHT ++LE +L   R  T G++  VFGCG
Sbjct: 323 FAALADC-HGAPGRLERIA-NPRDLTVFVDYAHTPDALENVLGAAREFTKGKLFAVFGCG 380

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIEKGNRIEA 448
           GDRD+ KRP+M       AD+A++T DNPR EDP  I A+    + G    + + +R  A
Sbjct: 381 GDRDRTKRPLMAAAVARFADVAVLTSDNPRHEDPLAIMADARPGLAGARRAVAEPDRRRA 440

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           I  A+  +  +DVLV+AGKGHET   + +  K    D  ++RE+ G
Sbjct: 441 IGLALSEMGPEDVLVIAGKGHETYQQIGD-VKHPFSDAAVVRELTG 485


>gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
 gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
          Length = 499

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 224/504 (44%), Gaps = 23/504 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +LI      +  ++              +  DSR+I  G +F+AI G   DG L I 
Sbjct: 6   QLHELIVPWISGINVKIPYL---------TGLELDSRNINFGNLFIAIQGYNTDGRLHID 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNT---PILVVDNTRKFLSLFASRLYGKHPE--N 116
            AI  GA AI+  S      F   I +N    PI+  +   K +S  A R Y        
Sbjct: 57  DAINNGAVAILSESYNKSTFFIKKIVNNVEVIPIIYFNQLNKCISNIAGRFYDHPSLCLK 116

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK+++   +       G  S  +G       S    +  TT S I   K L 
Sbjct: 117 LIGVTGTNGKTTITHLLTNWTSLLGERSAVMGTLGNGVLSDINPSCCTTCSAIETQKILK 176

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                GVT V++E SSHGLDQ+R+D +      F+N+  DH+DYH     Y  AK RLF 
Sbjct: 177 QFVQSGVTFVAMEISSHGLDQYRVDSLYFDVAIFSNISNDHLDYHNNINQYRMAKWRLFN 236

Query: 236 ELLPKESPAII--YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           EL  K     +       +   +           L   + G++I L K        ++  
Sbjct: 237 ELRVKNYVINVDDCVGYRWLLSLSNAVAVTIKNNLPRSWSGRWIALVKADYYLYGTKIVF 296

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +      L GE  V N L+A G  + +G     +L    KL+ V GR E +   +
Sbjct: 297 KSSWGNGFIHSQLLGEVNVSNILLALGALLIMGYSLKSLLYTGSKLYPVCGRLEVLSCLN 356

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               + VDYAHT ++L+ IL   + + + GR+  +FGCGG+RD+ KR +MG IA   +D 
Sbjct: 357 HPT-VIVDYAHTPDALKKILIFAKHLCNKGRLWCIFGCGGNRDRSKRSLMGVIANRYSDY 415

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I+T+DNPR EDP+ I  +II  I          +R+ AI   +      D +++ GKGH
Sbjct: 416 VIITNDNPRVEDPKLIIDDIICKIRNSEKLKIIEDRVYAINMVVSKACSDDFVLILGKGH 475

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +         D DI++ I 
Sbjct: 476 EKYQNIGLNYIS-HSDQDIVKSIF 498


>gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus metallidurans CH34]
 gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 515

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 156/484 (32%), Positives = 221/484 (45%), Gaps = 28/484 (5%)

Query: 33  VSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ D+R +Q G +F A V GN     DG   I +AIA GA AIV  +     +F+     
Sbjct: 32  LTGDTRRLQPGDVFFAYVLGNERLATDGRPHIDKAIAAGASAIVYEAD----NFAWPHDD 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L V +  +     A+  YG    N  I  VTGT+GK+S + ++ ++ Q +G     
Sbjct: 88  RVPHLAVSHLHELAGPIAAGWYGIAACNLTIAGVTGTNGKTSCSQWLARLLQMAGTRCAT 147

Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   +    A      TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G    
Sbjct: 148 IGTLGSGFPDALKLTGFTTPDAVQLQASLAELHDAGARAVAMEVSSHGLEQGRVAGTGFA 207

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TNL +DH+DYH T   Y  AK RLF     K +                    +  
Sbjct: 208 VAVLTNLTQDHLDYHGTMAEYEAAKARLFAWDGLKAAVINRDDGMGQRLLASNAVAVSAP 267

Query: 266 RVLSVGY---------QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +V+  G          +G+++    V A        +       D   P+ G F V N L
Sbjct: 268 QVIEYGIDGKAGASVARGQWLRATGVRATGAGTAFHVDGSFGTADVTTPMIGAFNVSNLL 327

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G  +A G+     ++ L +L  V GR E  G         VDYAHT ++L   L  +
Sbjct: 328 AVLGAALAQGVTWDAAIDALRRLTPVDGRMELFG-GHDAPLAVVDYAHTPDALVQTLTAL 386

Query: 377 RTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +     G++  VFGCGGDRD  KRP+MG +A  LAD  ++T DNPRSEDP +I   I 
Sbjct: 387 RPVAQARQGKLWCVFGCGGDRDATKRPLMGGVAERLADEVVLTSDNPRSEDPREILEAIA 446

Query: 434 HGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            G+          +R  AI  AI+     DV++VAGKGHE    +  G K+   D + +R
Sbjct: 447 DGMSDRARAALIEDRAAAILYAIKHAAPADVVLVAGKGHEATQEIQ-GRKRPFSDREHVR 505

Query: 491 EILG 494
             LG
Sbjct: 506 LTLG 509


>gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 490

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 149/506 (29%), Positives = 229/506 (45%), Gaps = 30/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+      +              +I  V   ++ +Q G IF+   G K  G  F+
Sbjct: 1   MQLAELLKDWPCSVTGGSIRT-------EITGVEDYAQAVQPGDIFIVRKGKKTSGSRFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+A+GA AIV   + SL      I    P + V NT  FLS  +++L     E   ++
Sbjct: 54  KEALARGAAAIVSEESISLP----IIDKEIPFVWVPNTALFLSYASAKLAAFPAEALTVI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKAL 174
           A+TGT+GK++V+ FV Q+       +  IG      +  +      +LTT     L   L
Sbjct: 110 AITGTNGKTTVSHFVSQLLNALHKHAAVIGTVGFFINGEKQQTAYEQLTTLQAKELHPIL 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +GVTHV +EASS GL QHRLD   +  G F NL  DH++ H   +AY  AK R  
Sbjct: 170 KQCVQKGVTHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKR-- 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L   S  ++   D      +                    H++ V     K  + + 
Sbjct: 228 ---LADLSKKLVLNGDDNFCRSVGIYDKKKSCSFGFDNHNDL-HIQIVSESVGKTVLCLQ 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +     P  G++ V NA+ +      +G+    ++ H+  L +  GR E +  N  
Sbjct: 284 TSASEHIVEIPFVGKYHVQNAVASLMAVWRLGVPMEDIVGHMWSLRLPEGRLEKI-ENPL 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +YVDYAHT+ +L+ +L+      S  I +VF CGG+RD+ KR  MG +A   AD+  
Sbjct: 343 GIDVYVDYAHTAEALQAVLQTFD--HSKTIYLVFSCGGNRDKAKRFAMGAVASKYADVIY 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPR EDP  I   II G      +    +R  AI  A+    K D+++VAGKGHE 
Sbjct: 401 LTTDNPRDEDPIVINESIIAGFTEQQYYEIYLDRKLAIHQALAKAEKGDIVLVAGKGHEQ 460

Query: 472 VHIVTNGEKKMSVDCDIIREILGLIL 497
              + N +K    D   +++    ++
Sbjct: 461 TQQIKN-QKFPFSDQQCVKDYFASLI 485


>gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
 gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
          Length = 534

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 147/486 (30%), Positives = 227/486 (46%), Gaps = 24/486 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  V+ DSR ++ G ++VA+ G +  G  F  QA   GA A++   A     +     
Sbjct: 54  VVVTGVTHDSRAVRPGDLYVAVQGQRVHGAKFAAQAARAGAAAVLTDPAG----YDRAAA 109

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P++ V + R  L   A+ +YG     +  +  TGTSGK++V+  V+   + +G+ + 
Sbjct: 110 TRLPVITVPDPRSRLGDVAAWIYGHPARELLLIGTTGTSGKTTVSYLVESGLREAGMRTG 169

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G           D+ LTTP    L    + +  + V   ++E SSH L   R+ G++ 
Sbjct: 170 LVGTVEIRVDDERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALALGRVAGVRY 229

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+D+H     YF  K RLF         A++  DD++ + ++ R    G
Sbjct: 230 DVAVFTNLSQDHLDFHADLHDYFETKARLFTP--EFAKVAVVNRDDSFGRTLIDRITEQG 287

Query: 265 CRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAA 319
              ++     G      +   V       +  +   G         LPG F V NA+ A 
Sbjct: 288 AIPVTTFSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGPFNVANAMAAI 347

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              I  G+     +  +     VPGR E V    +     VDY+H   ++E +L ++R I
Sbjct: 348 VALIEAGVPLPTAVAGVAAARGVPGRMERV-DEGQDFTAIVDYSHKPGAIEAVLTSLRPI 406

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           T GR+ +V GCGGDRD+GKRP+MG+ A  LAD  I+TDDNPRSEDP  I   ++ G+   
Sbjct: 407 TEGRLTIVVGCGGDRDRGKRPLMGEAAARLADAVILTDDNPRSEDPVTIITSMLEGVAKV 466

Query: 440 --------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                     + +R  AI  A+      DV+VVAGKGHE    V +       D D++RE
Sbjct: 467 PVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKGHERGQHVGD-RILPFDDRDVLRE 525

Query: 492 ILGLIL 497
            +   L
Sbjct: 526 AIRARL 531


>gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Staphylococcus epidermidis FRI909]
          Length = 494

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L+      
Sbjct: 20  DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCSIVVVNRELKLKG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T +  SL A  LY           VTGT+GK+S+A+ +  I ++   +S
Sbjct: 75  --NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S  +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              K +       +         F    P  G F + N + A  
Sbjct: 253 PYEVFTYGI--THEAQFMAKNIKESLQGVEFEFFTPFGSFPVRSPYVGRFNISNIMAAMI 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + G +   ++  + +L  V GR E +  +     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGTNLNEIINAVTELEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVQPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHEN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +IE  +R E IR AI++    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 464

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 146/498 (29%), Positives = 232/498 (46%), Gaps = 42/498 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +  L+       +           + +I  +  +++  Q G +F+A+ G   +G  +I
Sbjct: 1   MNISQLLINIIQTEV-----------DIEIKGLCLNTQSAQPGDLFIALQGESTNGTDYI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
            QAI +G  AI+V S          I    P + V+N   +L   A+  Y    + +++ 
Sbjct: 50  NQAIDKGCVAILVDSK--------EIECAIPSIRVNNLPIYLQTLANTFYNNATKIDVIG 101

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK+SV   + Q+ ++ G+ +  IG         Q    TTP  + L + L +   
Sbjct: 102 VTGTNGKTSVTYLISQLLEKLGVKNGLIGTLGIT-HNKQLYFNTTPDILTLYRVLHHYYQ 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q + +  +E SSH L Q+R+ G+ +    FTNL +DH+DYH T   Y   K RLF   L 
Sbjct: 161 QDIHYAVIEISSHALAQNRIAGLNIKQAVFTNLTQDHLDYHHTLDEYKTTKQRLFT--LN 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+  DD + K  +K +        S+        +          Q    V+   
Sbjct: 219 CVKSVILNQDDHHYKHFLKVSKGKKQTSYSLNDFNSIKII----------QQGFLVQLDH 268

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + F  P  GEF + N L       A+G     ++  + +L   PGR +           +
Sbjct: 269 YVFEIPFLGEFNLLNILATLNSVEALGFKRNDIIPLIYQLSTPPGRMQQ----INHYHAW 324

Query: 360 VDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +DYAHT N+LE  +  ++      +I +VFGCGG+RD+ KR  MG+IA  LAD  I+T+D
Sbjct: 325 IDYAHTPNALENAITTLQKHYPNFKIRIVFGCGGNRDRNKRSKMGRIASKLADSIILTND 384

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSE+P+ I  +I++GI    E     +R  AI TA+  L K + L++ GKGHET   +
Sbjct: 385 NPRSENPQTIINDILNGIDDSFELDIIKDRQLAIETAMITLKKNECLIITGKGHETTQQL 444

Query: 476 TNGEKKMSVDCDIIREIL 493
            N +     D  I +  +
Sbjct: 445 FN-KIIYLNDLQIAQNSI 461


>gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 526

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 143/518 (27%), Positives = 221/518 (42%), Gaps = 48/518 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I+   +      +  + ++  +++ +  G +F  + G    G  F        A A++  
Sbjct: 10  ISGGRLIRTDDPDLVVTDIGLNAQALPEGGLFAGVPGLHVHGAQFADS---SSAAAVLTD 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
                       R + PI+VVD+ R  L   +S +Y        ++ +TGT+GK++ +  
Sbjct: 67  HDG----VEKVTREDLPIIVVDDVRAVLGEVSSAVYDHPSRDLTVIGITGTAGKTTTSYM 122

Query: 133 VQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V+      G+S+  IG T T  +     + LTTP    L    + +  +GVTHV +E SS
Sbjct: 123 VEAALLHHGISTGLIGTTGTRINGEKVPSTLTTPEAPNLQALFAMMKKRGVTHVVMEVSS 182

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H +   R+ G       FTNL +DH+D+H T + YF  K RLF+E  P  +   +   D 
Sbjct: 183 HAIALGRVLGTHFSVAGFTNLSQDHLDFHPTMEDYFQTKARLFKEDSPLHAETSVVCIDD 242

Query: 252 YSKEVMKRAHNAGC--------RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
              + +                   +      +     V     +          +    
Sbjct: 243 AWGQRLATMLPHPFTVSTEAASEHDASLQPDVWAGPSSVMDNGVQTAELYGFGANEMTLH 302

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG F V NA++A GL +  G+ +   +E L  + V PGR E +          VDYA
Sbjct: 303 IPMPGRFNVANAMLAMGLLVKTGMKAEDAIEGLSTVTV-PGRLERIDCGQ-DFMAVVDYA 360

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   ++  +L  +R    GRI +V G GGDRD  KRPIMG+ A   +D+ IVTDDNPRSE
Sbjct: 361 HKPGAIAAVLDTLRAHVRGRIAIVVGAGGDRDHSKRPIMGREAALRSDLVIVTDDNPRSE 420

Query: 424 DPEKIRAEIIHGIPGF---------------------------IEKGNRIEAIRTAIEML 456
           DP  IR +++ G                                E G+R EAIR AI+  
Sbjct: 421 DPASIRQQVVAGAKEVADHVDVDRADEPRNKVKTEGSEHRPTIREIGDRREAIRAAIQWT 480

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              D ++VAGKGHET  ++ +       D    R  + 
Sbjct: 481 QPGDAVIVAGKGHETGQLIGD-TTHPFDDRVETRRSIE 517


>gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 555

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 149/524 (28%), Positives = 237/524 (45%), Gaps = 39/524 (7%)

Query: 3   LQDLIYKDFPELINQLSIF-PMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           L  L+  D   L   L    P +  +R++    ++ DSR +  G ++ A+ G +  G  F
Sbjct: 14  LAALLGPDASLLRPDLGADRPPEVPDREVHVRGITHDSRQVGPGDLYAALPGTRAHGADF 73

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
             QA   GA A++     + +       +  P++VV + R  L   AS ++    +++  
Sbjct: 74  AGQAAEAGAAAVLTDGDGAER----AAATGLPVIVVPDVRAVLGTAASWVFKDPAQDLLL 129

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           +  TGTSGK++V   V+   + +G+ +  +G            + LTTP    L    + 
Sbjct: 130 IGTTGTSGKTTVTYLVESGLRHAGMRTGLVGTVEMRVGDERVVSSLTTPEATDLHGLFAL 189

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +GV+  ++E SSH L   R+ G +     FTNL +DH+D+H   + YF+AK RLF  
Sbjct: 190 MRERGVSAAAMEVSSHALALSRVGGTRYDVAVFTNLSQDHLDFHSDLRDYFDAKARLFTP 249

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVGYQGKFIHLKKVCA 284
                  A++ ADD + + ++      G                             V  
Sbjct: 250 --EYCDIAVVNADDRFGRALVDMVQADGRVPVTTFAVDGYTDADPATAMEADWRAVDVRL 307

Query: 285 IHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   I   G  + +    LPG F V NA+ A    +  G+     +  +     VP
Sbjct: 308 GAMGSAFRIVGPGGMEANASVALPGPFNVSNAMAAIVGLVEAGLPLETAIAGVAAAPGVP 367

Query: 344 GRFEFV-----GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           GR E V         +     VDY+H   ++E +L  +R  T G + +V GCGGDRD+ K
Sbjct: 368 GRMEPVVANAVPHAFQDFTALVDYSHKPGAIEAVLTALRATTEGGLTMVVGCGGDRDRAK 427

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--------NRIEAIR 450
           RP+MG+ A  L+D  ++T+DNPR+EDP  I A ++ G+    E+         +R EAIR
Sbjct: 428 RPLMGEAAARLSDQLVITNDNPRTEDPVSIAASMLEGVAKVPEEHRARVTVEFDRAEAIR 487

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            A+E     DV+VVAGKGHET   V  GE     D +++R  + 
Sbjct: 488 LAVERARPGDVVVVAGKGHETGQYVK-GEVLPFDDREVLRAAIE 530


>gi|222053876|ref|YP_002536238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
 gi|221563165|gb|ACM19137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
          Length = 508

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 160/518 (30%), Positives = 251/518 (48%), Gaps = 45/518 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+            +  +   +  I  +  DSR +Q G +F A+ G   DG+ FI
Sbjct: 1   MRLSQLVKSVAV-------LDMVGDVDPDITGLFYDSRKVQPGGLFFALKGVASDGYAFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+         + A ++        ++   + V + R  +SL A+  Y        ++
Sbjct: 54  EVAVK--------AGAVAVVIEDDRTPADIAWVRVADGRLAMSLMAAAFYANPAAGLPVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++    ++ I ++ GL +  +G  +      +     TTP  + L + L  L
Sbjct: 106 GITGTNGKTTTTFLLESIFEKGGLPAAVLGTVNYRFGDLSIPAPNTTPESVDLQQTLRKL 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +E SSH L Q R+DG     G FTNL RDH+DYH   ++Y  +K RLF EL
Sbjct: 166 VDAGAKGIVMEVSSHALQQRRIDGCSFNVGVFTNLTRDHLDYHLDMESYLQSKTRLFSEL 225

Query: 238 L-----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L       E  A+I  DD Y + + + A            +   I+ + V    +    T
Sbjct: 226 LVPDEKKPERHAVINTDDEYGRRIAQAAACPVVTYGI--EKSADINAENVEFSVSGISCT 283

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++      +    L G F +YN + AAG  +A+G+    + E LE    VPGR E V  N
Sbjct: 284 LATPKGRIELRSMLVGRFNLYNIMAAAGAGVALGLPLESIKEGLEHHGQVPGRLERV-EN 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G  + VDYAHT ++LE +L  +  +  GRII +FGCGGDRD+GKRPIMG+IA   +D+
Sbjct: 343 ALGVTVLVDYAHTGDALENVLLTMTELKKGRIITLFGCGGDRDKGKRPIMGEIAGRYSDL 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI------------------PGFIEKGNRIEAIRTAIE 454
           +I+T DNPR+E+P +I A++  GI                   GF+    R +AIR A++
Sbjct: 403 SIITSDNPRTENPAEIMAQVREGIVRLGICEYSSYEAAIFQEKGFVSIEQRQDAIRLAVK 462

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                D++++AGKGHE   I+   EK    D ++  + 
Sbjct: 463 AARPGDIVLLAGKGHEDYQIIG-KEKFHFDDREVAAQA 499


>gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
          Length = 848

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 143/471 (30%), Positives = 218/471 (46%), Gaps = 15/471 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR I+AG  FVA  G   DG  +I  A+  GA  +   +    +        + P 
Sbjct: 60  LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGGFEWRP---EWDVPN 116

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + + R+   + A+  YG      +I+ VTGT+GK+SV  ++ Q               
Sbjct: 117 QAIPDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIV 176

Query: 151 STISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T+ +    +      TTP P+ L   L      G   V++E SSHGLDQ+R++G     
Sbjct: 177 GTVGNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRT 236

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-ADDAYSKEVMKRAHNAGC 265
             FTNL RDH+DYH++ + Y   K RLF     + +      A        +KR+ ++  
Sbjct: 237 AVFTNLTRDHLDYHRSMEEYGAVKARLFHWQGLQNAVINTDDAFGQQLCAELKRSESSLH 296

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   I + +  A      + ++           L G F   N   A G   A 
Sbjct: 297 VYSYGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGALCAG 356

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GR 383
           G D    L  L  +    GR +          + VDYAHT ++LE  L  +R I    G 
Sbjct: 357 GYDFQAALNALSHIRPATGRMD-CIIGEGKPLVVVDYAHTPDALEKALATLREIKQPAGC 415

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEK 442
           +  VFGCGGDRD+GKRP+MG++A  LAD  +VT DNPR+EDP+ I A+I+  +P   + +
Sbjct: 416 LWCVFGCGGDRDRGKRPLMGEVAARLADKVVVTSDNPRTEDPQAIIADILPAVPHPALVE 475

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R  AI  AI      D++++AGKGHET   + +G +    D ++  + L
Sbjct: 476 ADRKAAIEQAIAQAAPNDIILIAGKGHETYQEI-HGVRTHFSDFEVAEQAL 525


>gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
 gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
          Length = 514

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 154/476 (32%), Positives = 236/476 (49%), Gaps = 20/476 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ ++ DSR +Q G ++VA+ G    G  F  QA+A GA AI+          +A + + 
Sbjct: 32  VSGITIDSRQVQRGDLYVALPGATSHGAGFSAQALAAGASAILTDEEG----RAAAVATG 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LVV + R+ L   ++ +YG+      ++ VTGTSGKS+    ++   + +G  +  I
Sbjct: 88  LPVLVVPDPRRVLGQVSAWVYGRPAADVMVIGVTGTSGKSTTTFLLEAGLRAAGHKAGLI 147

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G             +LTTP    L    + +   GVT  ++E SSH L   R+D +    
Sbjct: 148 GGVEIHAGELRFTPKLTTPEASDLQGLFALMREHGVTAAAMEVSSHALALGRVDAVFYDV 207

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+D+H+    YF  K RLF   + +        DDA+ +E++  +      
Sbjct: 208 ALFTNLSQDHLDFHKDLDDYFATKARLFTPEMSRAGVVN--IDDAHGRELLGLSKIPMTT 265

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325
             + G          V    +     +   G  + D    LPG F V NAL A    +  
Sbjct: 266 FSAEGALEADWRAADVRLGADGSSFRVVGPGGVEEDATVALPGPFNVANALGAIVSLVEA 325

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+     +  +  L  VPGR E V       +  VDY+H   ++E +L+++R +T+GR+ 
Sbjct: 326 GVPLRAAVAGVGTLAGVPGRMERVPGGE-DFQAIVDYSHKPGAVESVLRSLREVTTGRLT 384

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------P 437
           VV GCGGDRD+GKRP+MG+ A  LAD+AI+T DNPRSEDP +I AE+++G          
Sbjct: 385 VVLGCGGDRDRGKRPMMGEAAARLADVAILTSDNPRSEDPLRILAEMMNGALGVSHDERA 444

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             I + +R  AI  AI      DV+VVAGKGHE    V + E     D  ++ + +
Sbjct: 445 HVIIEPDRAAAIDLAISRAGFGDVVVVAGKGHEQGQYVGD-EVLPFDDRQVVADAI 499


>gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
 gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
          Length = 488

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 199/492 (40%), Positives = 277/492 (56%), Gaps = 18/492 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +   FPE     S  P       +  +++DSR +  G +FVA+ G + DG LF  Q    
Sbjct: 7   LGALFPEAAGAASALP-------VAALTADSRRVGPGAVFVAVPGTRADGRLFAAQ---- 55

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            A A    +  +     A +      L V + R+ L+L A+RL+   P  ++AVTGTSGK
Sbjct: 56  -AAAAGAVAMVAEGPRPADLPQAVAYLSVPDARRALALAAARLHPGQPATVVAVTGTSGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHV 185
           SSVA FV+QI  R G  S  +G    ++        LTTP P+ L + L  L+  G+T +
Sbjct: 115 SSVADFVRQILARLGRRSASLGTLGVVTGEGAAYGALTTPDPVTLHETLDRLARDGITDL 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASSHG++Q RLDG++L A +FTNLG DH+DYH+T +AY  AK+RLFE+LLP+ + AI
Sbjct: 175 AMEASSHGIEQRRLDGVRLTAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAI 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD   +   +         +++ G  G+ + L  V      Q++T++ +G+      P
Sbjct: 235 VNADGPMADRAVAAIRARSLPLVTTGRAGETLRLDAVETRGFAQRLTLAAQGRALTVDLP 294

Query: 306 LPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           L G +QV NALVAA L +   A       V+  L  L  VPGR E V    RG    VDY
Sbjct: 295 LVGSYQVENALVAAALVLATPAGRGRLEAVIGALGHLAGVPGRLERVA-THRGALCVVDY 353

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   +L  +L+ +R   +GR++ V GCGGDRD+ KRP+MG+IA+  AD  IVTDDNPRS
Sbjct: 354 AHKPEALAGVLQALRPFATGRLVCVMGCGGDRDRAKRPMMGRIAVAGADRVIVTDDNPRS 413

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E+P  IRAEI+   PG  E G+R EAIR A+  L   DVLVVAGKGHET  I+ +     
Sbjct: 414 EEPAAIRAEILAAAPGAEEIGDRAEAIRAAVRDLAPGDVLVVAGKGHETGQIIGD-RTLP 472

Query: 483 SVDCDIIREILG 494
             D D +   + 
Sbjct: 473 FSDRDAVLSAIE 484


>gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 513

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 148/501 (29%), Positives = 223/501 (44%), Gaps = 30/501 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +L+      +              +I  V   ++ ++ G IF+   G K  G  F+ 
Sbjct: 26  QLAELLKDWPCSVTGGSIRT-------EITGVEDYAQAVRPGDIFIVRKGKKTSGSRFVK 78

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
           +A+A+GA AIV   + SL      I    P + V NT  FLS  +++L     E  +++A
Sbjct: 79  EALARGAAAIVSEESISLP----IIDKEIPFVWVPNTALFLSYASAKLAAFPAEALSVIA 134

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALS 175
           +TGT+GK++V+ FV Q+       +  IG                 LTT     L   L 
Sbjct: 135 ITGTNGKTTVSHFVSQLLNALHKKAAVIGTIGFYLDGEKQQTSYEELTTLQAKELHPILK 194

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +GV+HV +EASS GL QHRLD   +  G F NL  DH++ H   +AY  AK R   
Sbjct: 195 QCVRKGVSHVVLEASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKR--- 251

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L   S  ++   D      +                    H++ V     K  + +  
Sbjct: 252 --LADLSKKLVLNGDDNFCRSVGIYDKKKSCSFGFDNHNDL-HIQIVSETVGKTVLCLQT 308

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              +     P  G++ V N + A      +G     ++EH+  L +  GR E +  N  G
Sbjct: 309 SASEHIIEIPFVGKYHVQNTVAALMAVWRLGTPMDDIVEHMWSLRLPEGRLEKI-DNPVG 367

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +YVDYAHT+ +L+ +L+      S  I +VF CGG+RD+ KR  MG +A   AD+  +
Sbjct: 368 IDVYVDYAHTAEALQAVLQTFDR--SKTIYLVFSCGGNRDKAKRFAMGAVASKYADVIYL 425

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T DNPR EDP  I   II G      +    +R  AI  A+    K D+++VAGKGHE  
Sbjct: 426 TTDNPRDEDPIIINESIIAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKGHEQT 485

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             + N +K    D   I++  
Sbjct: 486 QQIKN-QKFPFSDQQCIKDYF 505


>gi|225630606|ref|YP_002727397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
 gi|225592587|gb|ACN95606.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
          Length = 475

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 174/498 (34%), Positives = 268/498 (53%), Gaps = 35/498 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L++                  + +I  V+ + + I+ G++FV +  ++ D  ++I
Sbjct: 1   MKLRELLHNII-----------DVNFDIEIKGVTCNPKKIKEGYLFVCV--SERD-RIYI 46

Query: 61  PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117
            Q ++ GA+AI+ S     +L       R     +   N ++  S   SR Y  K P+ +
Sbjct: 47  DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKAL 174
            AVTGT+GK+SV  F +QI Q SG ++  IG   T          N LTTP    L    
Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDL---Y 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L    V H+ +E+SSHG+DQ+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF
Sbjct: 164 ATLRGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E+LP+   AI+ AD      ++K A     +V++ G +G  I L +  +  N Q +T+ 
Sbjct: 224 YEVLPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVK 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++ + ++  FP+ G+FQ YN L A G+      +       +EKL   PGR E V     
Sbjct: 284 IDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVKP--- 335

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ KR  MGKIA   AD  I
Sbjct: 336 --FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVI 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           +TDDN R EDP KIR +I+   P  +E G R EAI   +++  N+  +L+VAGKG+E   
Sbjct: 394 ITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLVAGKGNEKFQ 453

Query: 474 IVTNGEKKMSVDCDIIRE 491
           I+ N       D ++I+ 
Sbjct: 454 IIGNQT-FEFSDVEVIKN 470


>gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
 gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 496

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 150/481 (31%), Positives = 227/481 (47%), Gaps = 18/481 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER I  +S+DSR    G  F+A  G   DG  ++  A+A GA A +V  A +     A  
Sbjct: 15  ERVIGTLSADSRKAGQGDGFIAWPGAATDGRNYVNAALAAGASACLVEHAGA----QAYG 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++  +      +      A+  +G   E   + A+TGT+GK+S A ++ Q   R G   
Sbjct: 71  FNDDRVATYAGLKAATGPMAAAYFGAPSEQLQVTAITGTNGKTSTAWWLAQALGRLGRKC 130

Query: 145 FQIGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G        A   N LTTP P+ L + L   + +G    ++EASS GL++ RLDG +
Sbjct: 131 GIVGTLGIGEPGAMVANGLTTPDPVLLQQQLRRFADEGFAACALEASSIGLEEGRLDGTR 190

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +    FTN  +DH+DYH +   Y+ AK  LF    P    AII  DD+   E+       
Sbjct: 191 IQIAVFTNFTQDHLDYHASMPDYWRAKQMLFNW--PGLRAAIINVDDSRGLELSAALAGT 248

Query: 264 GCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              V ++   G      + +C   +     +   G+      P+ G + V N L      
Sbjct: 249 SLDVWTLSCAGPARLQAQAICQGAHDLSFDVVEGGERHRISTPMVGLYNVSNLLGVMASL 308

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+ +  A  +     L  VPGR E +        + +DYAHT ++LE +L  +  +  G
Sbjct: 309 RAMDVPLADAVAACADLLPVPGRTETLAVPGLPL-VVIDYAHTPDALEKVLTALNPVAQG 367

Query: 383 R---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
           R   +  VFGCGGDRD GKRP+M   A   AD  ++T DNPRSEDP  I  +++ G+   
Sbjct: 368 RGGRLWCVFGCGGDRDAGKRPLMAAAAEKNADQLVITSDNPRSEDPVTIIGQMLKGLSRP 427

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
                + +R  AI  A+++   QDV+++AGKGHE    +  G K    D D  + IL  +
Sbjct: 428 QVAHVQEDRRAAIAHALQLAQPQDVVLLAGKGHENYQEIK-GVKFAFSDRDQAQAILDAL 486

Query: 497 L 497
           +
Sbjct: 487 V 487


>gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
 gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
          Length = 515

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 152/502 (30%), Positives = 232/502 (46%), Gaps = 24/502 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +D   L++  +       +  +  V+ DSR ++ G ++ A+ G++  G  F  Q    GA
Sbjct: 15  RDLALLVSAPADVIDDLDDVAVTGVTLDSRAVRPGDLYAALPGSRAHGADFAAQVADAGA 74

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGK 126
            A++  +    +  +A +  + P++VV+  R  L   A+R+YG       ++ +TGT+GK
Sbjct: 75  AAVLTDADGVERLRAAGV--DLPVIVVEAPRSVLGTIAARIYGTTDLSLTMVGITGTNGK 132

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A  V       G  +  IG   T        +  TTP    L   L+ +  +     
Sbjct: 133 TTTAYLVASALDALGQRTGLIGTVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTC 192

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L QHR+DG+      FTNL +DH+D+H   + YF+AK +LF           
Sbjct: 193 VMEVSSHALSQHRVDGVLYDLSLFTNLSQDHLDFHADMEDYFSAKAQLFTPERSTRGLIC 252

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D      +          L+         +  V A     +  +   G + D    
Sbjct: 253 ---VDDIWGRRLAEECGIPVTTLTTIEGQTADWVVTVDATEPA-RFALRGTGIELDLRSA 308

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYV 360
           LPG+F V N  +AA   + +G D+  V   +     VPGR E V          G    V
Sbjct: 309 LPGDFNVANTAMAAVALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSGLLAVV 368

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT +++E  L  +R  T+GR++VV G GGDRD+GKR  MG+ A  LAD+ +VTDDNP
Sbjct: 369 DYAHTPDAVEAALAALRPTTTGRLVVVLGAGGDRDRGKRHGMGRAAAGLADVVVVTDDNP 428

Query: 421 RSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNK---QDVLVVAGKGHET 471
           RSEDP +IR  ++ G          +E G+R +AIR  + +  +     VL V GKGHET
Sbjct: 429 RSEDPAQIRTAVVEGARSIDTTALLVEVGDRRKAIREGVRLAREGGSGSVLAVVGKGHET 488

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              + N       D D +R  L
Sbjct: 489 GQEI-NEVVHPFDDRDELRAAL 509


>gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 512

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 144/510 (28%), Positives = 233/510 (45%), Gaps = 33/510 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR   A   F+A+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAKGT 61

Query: 69  EAIVVSS--AYSLQDFSATIRSNTP-ILVVDNTRKFLSLFASRLYG-KHPENILAVTGTS 124
           + I+       S    S+      P I  V+N ++ LS  A   Y  K P+NI+ +TGT+
Sbjct: 62  KLILSDKLPRQSSIATSSVAEGELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTN 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S++S++ Q+ +  G  S  +G     I    Q++  TT   + L + +SY  +    
Sbjct: 122 GKTSISSYIAQLQKLIGQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISYYKNYQN- 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +E SSH LDQ R +G+      F+NL  DH+DYH+T   YF AK +LF+        
Sbjct: 181 -LVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQF--RSLKK 237

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-------------------QGKFIHLKKVCA 284
           A+I  DD Y +++ +  + +  R                         +   I+++    
Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSRRADIYIESKSI 297

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            + +    + +  K                 L  +   +        +LE++ KL  V G
Sbjct: 298 ENMQTSFDLYISQKYMGTYQTSLVGEFNLMNLGLSLAALDDSSTREQLLENISKLKPVKG 357

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +     G +I +DYAHT ++LE  L+ +       +  +FGCGG+RD  KRPIM +
Sbjct: 358 RMEVIA-LVNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTKRPIMAQ 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           IA + A   ++T+DN R E  E I  +I  G           +R EAI+  IE     DV
Sbjct: 417 IAEEYASKIVITEDNNRFESIESIFDDIKKGFSHPDKHTFIDSREEAIKYTIENSKANDV 476

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +++AGKGHE      NG K+   + D+I  
Sbjct: 477 ILLAGKGHECYLD-KNGIKEYFDERDVINR 505


>gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf.
           saccharolyticum K10]
          Length = 487

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 129/496 (26%), Positives = 206/496 (41%), Gaps = 28/496 (5%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D + +   EL+      P +       +V  DSR      +FV + G   D H FIP  +
Sbjct: 4   DWLKELKYELVQGELDVPAE-------DVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVL 56

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G + +VV    S       I  +  ++ V+N R  L+L ++  +G     ++ +  T 
Sbjct: 57  KAGTKILVVEREVSE------IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTG 110

Query: 125 GKSSVASFVQQIC--QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            K    +        +  G     IG     I       + TTP    L +    +   G
Sbjct: 111 TKGKTTTTYMIKSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAG 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++ +E SS     HR+DG+    G F N+  DHI      +     +   +++ L K 
Sbjct: 171 CEYMVMEVSSQSYLMHRVDGLTFDYGLFLNISNDHIGP---GEHADFEEYLHYKKQLLKN 227

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               I  +D    E + R   A     S+     F          +     +     +++
Sbjct: 228 CKTAIVNEDDEHFEEIIRGAQAKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYE 287

Query: 302 F--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG F   NAL +  LC  + +  A V   LE L +  GR E V   S    + 
Sbjct: 288 MEVKVNVPGRFNAANALASVALCSFLDLPKAKVAHGLEHLKID-GRMEIV-YKSSKMTVI 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH + S+E +LK +R     R++ VFGCGG+R + +R  MG+I  +LAD  I+T+DN
Sbjct: 346 VDYAHNAVSMESLLKTLRDYKPKRLVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDN 405

Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            R ED   I  +I  G+      +IE  +R  AI  AI   +  D++ + GKGHE    +
Sbjct: 406 SRYEDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMIAIIGKGHEDYQEI 465

Query: 476 TNGEKKMSVDCDIIRE 491
             G +   +D  ++ E
Sbjct: 466 -RGVRYPFLDRQVVLE 480


>gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 494

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 124/477 (25%), Positives = 216/477 (45%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++++ ++++DSR  + G IFVA  G   D H F    + QG   IVV+           +
Sbjct: 20  DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQD-------L 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  SL A  L+      ++    TGT+GK+S+A+ +  I ++   +S
Sbjct: 73  NGDVTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +     +G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSEYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                                V       +         +    P  G+F + N + A  
Sbjct: 253 PYEVFTYGIDN--DAQFRAINVEESLQGVKFEFDTPFGSYQVESPYVGKFNISNIMAAMI 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + G     ++E ++ L  V GR E +  +     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGATFEEIIEAVKSLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVKPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHSN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           ++E  +R E I+ AI++    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YVEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis RP62A]
 gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis RP62A]
 gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU028]
 gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 494

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L+      
Sbjct: 20  DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELKG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T +  SL A  LY           VTGT+GK+S+A+ +  I ++   +S
Sbjct: 75  --NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S  +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              K +       +         F    P  G F + N + A  
Sbjct: 253 PYEVFTYGI--THEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAMI 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + G +   ++  + +L  V GR E +  +     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGTNLNEIINAVTELEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVQPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--G 438
             ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHNN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +IE  +R E IR AI++    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
 gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
          Length = 487

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 144/496 (29%), Positives = 215/496 (43%), Gaps = 23/496 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+DL+   F     +    P             DSR + AG +F+A+ G K DG  ++
Sbjct: 2   MLLKDLLAPWFHYAGTESVHAP-----------VIDSRQLTAGGLFIAVPGYKTDGRAYL 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
             A A+GA A +V +    +    +       +      + +S  A + Y   +    ++
Sbjct: 51  DAAFAKGAAAALVHTDDPDEHGKVSYEPGL-CIAFFQLNRQVSAVARQYYALTRGKLRVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SV+  + Q+ +  G  +  +G          QD   TT   + +   L   
Sbjct: 110 GVTGTNGKTSVSQLIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLYDF 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QG    ++E SSHGL Q R++ +      FTNL RDH+DYH     Y  AK RLF   
Sbjct: 170 EHQGAKVCAMEVSSHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLFAF- 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   D    E              +G+       +     H      +   G
Sbjct: 229 --GSLSARVINLDDKVGEQWFDGMGCATGFSCLGHAKADWRFENAHFHHAGFSANLVWPG 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G F + N L A      +G     ++    KL  VPGR E       G  
Sbjct: 287 GQKPLECRLLGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPGRME-CFPRKDGVS 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT +++E  LK  R    G + +VFGCGGDRD+GKRP+M + A   AD  ++T 
Sbjct: 346 LVVDYAHTPDAIEQALKAARHHCEGALWIVFGCGGDRDKGKRPLMAEAAEAFADCLVLTS 405

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DN RSEDP  I  ++  G+      +   +R+ AIR A+ M    D++++AGKGHET   
Sbjct: 406 DNARSEDPAVILEDMKAGLDAPERALCMVDRVAAIRHAVSMAKPGDLILLAGKGHETYQE 465

Query: 475 VTNGEKKMSVDCDIIR 490
           +  G K    +  + R
Sbjct: 466 IA-GVKHEYDERALAR 480


>gi|254994779|ref|ZP_05276969.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. Mississippi]
          Length = 472

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 238/472 (50%), Gaps = 23/472 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++DSR ++ G+IFV +      G  F+P A+  GA+ IV  +A  L         ++
Sbjct: 15  SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66

Query: 91  PILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I++           AS   +G  PE +  VTGT+GK+SVA F +QI   +G +   +G 
Sbjct: 67  QIIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 150 TSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              I            TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K   
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL  DH+DYH + + Y+  K +LF E+L  E  A++ AD     E+ + A      
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELAAGRNII 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              V      +   +     +   V +      +D  FP+ G+FQ+ N L A  +  A G
Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKM-CGEVIYDGAFPVLGKFQISNLLCALAVVAASG 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385
                V   +++L    GR E       G RI +DYAHTS++L+  L +++      + +
Sbjct: 306 SGHRDV--PIDRLAPPRGRMEL-----IGDRIIIDYAHTSDALKHALTSLKWHGFPQKTV 358

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +R
Sbjct: 359 LVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDR 418

Query: 446 IEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +AI  A+    + + VL++AGKGHET   +  G+     D   +R  L  +
Sbjct: 419 GDAIHYAVNFAIRNNYVLLIAGKGHETTQQIA-GKSVEFNDGTAVRRCLSEM 469


>gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
          Length = 515

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 150/503 (29%), Positives = 225/503 (44%), Gaps = 29/503 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL   P   R  ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELADQLG-LPAPERNAEVTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   + + +       +  P LVVD+ R  +   A  +YG    +   + +TGTSGK++
Sbjct: 76  VLTDPSGAER----VAATGLPALVVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRS--------GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
            A  V+   + +        G     IG            +  TTP    L    + +  
Sbjct: 132 TAYLVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRE 191

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G   V++E SSH L   R+DG       FTNL  +H+++H   + YF AK +LF     
Sbjct: 192 RGTDAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLFTPERS 251

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGK 298
           +        DD Y + + K A        + G+       + V         T I  E +
Sbjct: 252 RLGVVN--VDDEYGRRLAKEAGVPVVTYSAEGHPDADWRTEDVRVGPLDSSFTVIGPEDQ 309

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PLPG F V N L A     A G+D     + +  +  VPGR E V         
Sbjct: 310 RVAARSPLPGPFNVANTLAAIVALAAAGLDPQAAADGVAAVPGVPGRLERVDAGQ-PYLA 368

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH ++++E +L+ +R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T D
Sbjct: 369 VVDYAHKTDAVESVLRTLRRVTEGRVHVVLGCGGDRDITKRAPMGAAAARLADTAVLTSD 428

Query: 419 NPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSEDP  I A ++ G                +R  AI  A+      D ++VAGKGHE
Sbjct: 429 NPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHE 488

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               +  G  +   D  ++RE +
Sbjct: 489 QGQDIA-GVVRPFDDRQVLREAI 510


>gi|283797828|ref|ZP_06346981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
 gi|291074516|gb|EFE11880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
          Length = 487

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 128/496 (25%), Positives = 205/496 (41%), Gaps = 28/496 (5%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D + +   EL+      P +       +V  DSR      +FV + G   D H FIP  +
Sbjct: 4   DWLKELKYELVQGELDVPAE-------DVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVL 56

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G + +VV    S       I  +  ++ V+N R  L+L ++  +G     ++ +  T 
Sbjct: 57  KAGTKILVVEREVSE------IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTG 110

Query: 125 GKSSVASFVQQIC--QRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
            K    +        +  G     IG     I       + TTP    L +    +   G
Sbjct: 111 TKGKTTTTYMIKSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAG 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++ +E SS     HR+DG+    G F N+  DHI      +     +   +++ L K 
Sbjct: 171 CEYMVMEVSSQSYLMHRVDGLTFDYGLFLNISNDHIGP---GEHADFEEYLHYKKQLLKN 227

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               I  +D    E + R   A     S+     F          +     +     +++
Sbjct: 228 CKTAIVNEDDEHFEEIIRGAQAKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYE 287

Query: 302 F--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG F   NAL +  LC  + +    V   LE L +  GR E V   S    + 
Sbjct: 288 MEVKVNVPGRFNAANALASVALCSFLDLPKPKVAHGLEHLKID-GRMEIV-YKSSKMTVI 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH + S+E +LK +R     R++ VFGCGG+R + +R  MG+I  +LAD  I+T+DN
Sbjct: 346 VDYAHNAVSMESLLKTLRDYKPKRLVCVFGCGGNRAKERRYSMGEIGGNLADFCIITEDN 405

Query: 420 PRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            R ED   I  +I  G+      +IE  +R  AI  AI   +  D++ + GKGHE    +
Sbjct: 406 SRYEDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMIAIIGKGHEDYQEI 465

Query: 476 TNGEKKMSVDCDIIRE 491
             G +   +D  ++ E
Sbjct: 466 -RGVRYPFLDRQVVLE 480


>gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 513

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 140/511 (27%), Positives = 233/511 (45%), Gaps = 33/511 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR   A   F+A+ G+  DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIQTLSQNNFQIESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAKGT 61

Query: 69  EAIVVSS---AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTS 124
           + I+        S+   S      + I  V+N ++ LS  A   Y  K P+NI+ +TGT+
Sbjct: 62  KLILSDKLPRQSSIATPSVAEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITGTN 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK+S++S++ Q+ +     S  +G     I    Q++  TT   + L + +S   +    
Sbjct: 122 GKTSISSYIAQLQKLLDQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISDYENYQN- 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +E SSH LDQ R +G+      F+NL  DH+DYH+T   YF AK +LF+        
Sbjct: 181 -LVMEVSSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KNLKK 237

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-------------------QGKFIHLKKVCA 284
           A+I  DD Y +++ +  + +  R                         +   I+++    
Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSI 297

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            + +    + +  K                 L  +   +        +LE++ KL  V G
Sbjct: 298 ENMQTSFDLYISQKHIGTYQTSLVGEFNLMNLGLSLAALDDSSTRDQLLENISKLKPVKG 357

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +     G +I +DYAHT ++LE  L+ +       +  +FGCGG+RD  KRPIM +
Sbjct: 358 RMEVIA-LVNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFGCGGNRDTTKRPIMAQ 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           IA   A+  +VT+DN R E  E I  +I  G           +R +AI+  IE     DV
Sbjct: 417 IAEKYANKIVVTEDNNRFESIESIFEDIKKGFSHPDKRNFIDSREKAIKYTIENSKANDV 476

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +++AGKGHE      NG K+   + ++I + 
Sbjct: 477 ILLAGKGHECYLD-KNGIKEYFDEREVIAKY 506


>gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 494

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 214/477 (44%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++++++DSR  + G +FVA  G   D H F    + QG   +VV+    L+      
Sbjct: 20  DIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQGCGIVVVNRELELKG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             N   +VV +T +  SL A  LY           VTGT+GK+S+A+ +  I ++   +S
Sbjct: 75  --NVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +          +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S  +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSDYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              K +       +         F    P  G F + N + A  
Sbjct: 253 PYEVFTYGI--THEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYVGRFNISNIMAAMI 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + G +   ++  + +L  V GR E +  +     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGTNLNEIINAVTELEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVQPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--G 438
             ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGATHNN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +IE  +R E IR AI++    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
 gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
          Length = 532

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 151/481 (31%), Positives = 231/481 (48%), Gaps = 24/481 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  +S DS+ I+ G +++A  G    G  F P A+A GA A+V  +A +        
Sbjct: 38  DTTVTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAA----MLD 93

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
               P+LV ++ R      ++ +YG+      +  VTGT+GK++ +  +    +R+GL +
Sbjct: 94  GLAVPVLVAEDVRGLAGRLSAFVYGEPATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKT 153

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I      +  TTP    L   L+    + V  +++E SSH L   R  GI+
Sbjct: 154 GVIGTVQILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGRTAGIR 213

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A +F NL +DH+D+H   + YF AK +LF         A++  DD + + V++R    
Sbjct: 214 FKAAAFLNLTQDHLDFHADFEDYFEAKAKLFTP--GYTERAVVDVDDEHGRRVVERCRAN 271

Query: 264 GCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAG 320
           G +V +   +G       + +    +    T++            LPG+F V NAL A  
Sbjct: 272 GVQVHTFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASAGLPGDFNVANALAAIV 331

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
           L    GID    +  +  +H VPGR E +    +     VDYAHT +++   L  +R + 
Sbjct: 332 LLAVTGIDLETAIAGVADVHGVPGRMERIQVPGQQFLAVVDYAHTPDAVLTALSALRPVA 391

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               GR+ VV GCGGDRD+ KRP+MG  A+ LAD A+ TDDNPR+E    I A +  G  
Sbjct: 392 ERGRGRLRVVVGCGGDRDKTKRPLMGAAAVRLADEAVFTDDNPRTESSADILAAVTAGAD 451

Query: 437 -------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
                    +    +R EAIR A+      DVL+VAGKGHE    +  G KK   D  ++
Sbjct: 452 AELAGAEKNYRVVADRAEAIRRAVAASGPGDVLIVAGKGHEQGQEIA-GVKKPFDDRVVL 510

Query: 490 R 490
           R
Sbjct: 511 R 511


>gi|291288108|ref|YP_003504924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885268|gb|ADD68968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 484

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 147/502 (29%), Positives = 232/502 (46%), Gaps = 28/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+  L+     +  +    F    ++  I     DSR+I+    F A  G   D H F 
Sbjct: 1   MKVSQLLDGLSIKGFDLDVDFETDVKDINI-----DSRNIKRKAPFFAFQGAAVDSHKFA 55

Query: 61  PQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
            +  A G    +V                  P +VV++ RK L+      +GK  E +  
Sbjct: 56  AEVYASGKVPFVVAEHKIE----------GVPTVVVEDGRKALARACRNFFGKPDEEMDS 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           +AVTGT+GK++    + +I + +G  S  +G T             TTP      K L  
Sbjct: 106 IAVTGTNGKTTTTYIINEILKTAGRKSVLVGTTGVKYDDKFIYMDSTTPPTYEFFKVLRD 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               G   + +E SSH L QHR++G+      FTNL  DH+DYH+T   YF AK  LF  
Sbjct: 166 AKDAGCDTLVMEVSSHALHQHRINGVVFDVAIFTNLSGDHLDYHKTMDEYFEAKKILFTP 225

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +       +   + + ++K A                   +++    +  +      
Sbjct: 226 EYSRVGVIGKDS--EFGERLLKEAEVDRVSYGITNKSEIT--AEEIWFGLSGLRAKFVYP 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    L G   + N + A   CI +GID+  +   +E+L  VPGR E     S G 
Sbjct: 282 AGSIEMESSLVGLHNLENLMAAGSGCIMLGIDAKHIKSGIERLKNVPGRLEKF-EKSNGA 340

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I+VD+AHT ++L+ +L+ + +    R+I VFGCGGDRD+ KRP M K A   +D+ IVT
Sbjct: 341 YIFVDFAHTDDALKNVLEALGSFKENRVITVFGCGGDRDRSKRPRMAKTAELDSDVVIVT 400

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP+++  +I+ G       I   +R +AI+ A+EM   +D++++AGKGHE   
Sbjct: 401 SDNPRTEDPQQVIEDILVGFENADSVIICPDRSKAIQKAVEMAEPKDIVLIAGKGHEDYM 460

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
           I+   EK    D + +++ L +
Sbjct: 461 ILGT-EKIHFDDREEVKKHLEV 481


>gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase
           [Aromatoleum aromaticum EbN1]
 gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase
           [Aromatoleum aromaticum EbN1]
          Length = 502

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 144/476 (30%), Positives = 226/476 (47%), Gaps = 24/476 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++DSR +Q G +F A  G   DG  ++  AI +GA A++   +    D       + 
Sbjct: 21  HGITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAAAVLWDDS----DGMRLEALSV 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P L V   R      A  ++G     +    VTGT+GK++V+ ++       GL    IG
Sbjct: 77  PALPVSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQWLAAALAGLGLRCGVIG 136

Query: 149 PTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                      D+  TTP  + + + L+   ++     ++E SS GLDQ R++G++    
Sbjct: 137 TLGCGFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAMEVSSIGLDQERVNGVEFDVA 196

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYH + ++Y  AK RLF+  LP    A+I  DD +     +R   +G  V
Sbjct: 197 VFTNLTRDHLDYHSSMESYAVAKARLFD--LPGIGAAVINFDDDFGLAQARRLAASGMPV 254

Query: 268 LSVGYQ---------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +               + +       + +  +  +  +G        +   F V N +  
Sbjct: 255 IGYTRFVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHHTVQVRMVAPFNVSNLMAV 314

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G  +   +    ++  + +L    GR + VG       + +DYAH+ ++L  +L+ +R+
Sbjct: 315 IGSLLVRDVPMDDIVRSVSRLTPPAGRMQLVG-GVGEPLVVIDYAHSPDALAQVLEAVRS 373

Query: 379 ITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
              GR   ++ VFGCGGDRD GKRP+MG +A  LAD  IVT DNPRSEDP KI   I+ G
Sbjct: 374 TAQGRGGRLVCVFGCGGDRDAGKRPMMGDVARALADRVIVTSDNPRSEDPLKIIDAIVRG 433

Query: 436 I-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
             P      +R +AIR A+      DV+V+AGKGHE    V  G +    D +  R
Sbjct: 434 AGPNAERIVDRAQAIRIAVGEAGANDVIVLAGKGHEPYQEVL-GVRLPFSDVEQAR 488


>gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
 gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
          Length = 503

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 161/490 (32%), Positives = 233/490 (47%), Gaps = 29/490 (5%)

Query: 30  INEVS------SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           I  +       SDSR I+     +F A  G+  DG  +I +AI  GA+A+V  S+    D
Sbjct: 14  IKGICPNGQLFSDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVVYESS----D 69

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQR 139
           F          L V   +      A   YG      +I+AVTGT+GK+S   ++ Q   R
Sbjct: 70  FEWNPDWKVDHLGVVGLKANAGPIADAFYGSPARSMSIIAVTGTNGKTSTTQWIAQALSR 129

Query: 140 SGLSSFQIGPTSTISSFA------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            G  +  IG               ++   TTP  + L + L+ L S+ V  V++EASS G
Sbjct: 130 LGRKTAVIGTLGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIG 189

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY--ADDA 251
           +DQ RL+G+ +    FTN  RDH+DYH    +Y  AK RLF     K +   +       
Sbjct: 190 IDQGRLNGLTIDIALFTNFTRDHLDYHHDMASYKAAKRRLFGWKGLKHAVVNLDDAMGIE 249

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            + E+  +    G  +         ++   +    +  +  I     D      L G F 
Sbjct: 250 LASELKSKMALTGYSINGARADIPVLNAVDIRNRTHGDEFRIESPYGDSKIRTQLIGRFN 309

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L   G+ +A GID    ++ L  L   PGR + +G       + +D+AHT ++LE 
Sbjct: 310 VSNVLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQQMGGKEAPL-VVIDFAHTPDALEK 368

Query: 372 ILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L  +R +    +G++  +FGCGGDRD GKRP MG+ A   AD+ IVT DNPRSEDP+KI
Sbjct: 369 GLSTLRHVADDRNGKLWCIFGCGGDRDHGKRPEMGEKAES-ADVIIVTSDNPRSEDPKKI 427

Query: 429 RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
             EI+ G+    I+  +R  AI TA++  +K DV+ VAGKGHE    V  G K+   D D
Sbjct: 428 MEEIVSGMTKDPIQVEDRATAILTAVKQASKNDVIFVAGKGHEAYQEVK-GVKRPFADAD 486

Query: 488 IIREILGLIL 497
            +   L   L
Sbjct: 487 HVALALASRL 496


>gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454]
          Length = 510

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 149/504 (29%), Positives = 223/504 (44%), Gaps = 33/504 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I +   E++  L        + ++     DSR + AG  FVA   +  D   +I  A+ +
Sbjct: 11  IERVRAEVLAWLRARLAPHAQLRV-----DSRAVCAGDAFVAYAVDSADSRAYIADALQR 65

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTS 124
           GA A++V +               P+L V    +     AS  YG+   ++L   +TGT+
Sbjct: 66  GAAAVLVQAGGEFPG-------GGPVLQVPELDQLAGHIASAWYGEPSRDMLMVGITGTN 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ + +V      SG     IG   T           TTP    +  +L+ L + G +
Sbjct: 119 GKTTTSHWVAGALSGSGTRCAIIGTLGTGLPGQLSPTGFTTPDAPQVHHSLAALRAHGAS 178

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            VS+E SSH L Q R++G+      FTNL +DH+DYH+   +Y  AK RLF+        
Sbjct: 179 AVSMEVSSHALHQGRVNGVAFDIAVFTNLTQDHLDYHKDLASYEAAKARLFDW---PGLR 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEG 297
           A +   D  +   +        R +S G            H   + A       T+  + 
Sbjct: 236 AAVINRDDEAGRRLIGHLATRVRTISYGIASTRPRGDASLHAMAIRATATGTAFTVVSDW 295

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +      G F V N L   G+ +A  +     L  + +L  V GR + +G   +   
Sbjct: 296 GHAELEVGTLGLFNVANLLAVLGVLLAADVPFDAALSQITRLEPVNGRMQQLGGRPQVDE 355

Query: 358 I--YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               VDYAHT ++LE  L  +R I     G+++ VFGCGG+RD  KRP+MG IA  LAD 
Sbjct: 356 PLVVVDYAHTPDALEKTLDALRPIATQRGGKLVCVFGCGGERDATKRPLMGAIAERLADS 415

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            IVT DNPRSE P  I  +I+  +          +R  AI  A+   +  DV+++AGKGH
Sbjct: 416 VIVTSDNPRSEPPLAIIGQIVSAMREPARVRTIEDRAGAILQAVRGASAADVVLIAGKGH 475

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    V  G+K+   D D     L
Sbjct: 476 EATQEVM-GKKRPFSDQDHAHLAL 498


>gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 508

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 154/485 (31%), Positives = 231/485 (47%), Gaps = 32/485 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++SDSR I  G +FVA  G++ DG  +I  AI +GA+A++  +A    D       +   
Sbjct: 25  LASDSRRIAQGDVFVAYPGDEADGRSYIANAIERGAQAVIYEAAGCTWDAEW----DVAH 80

Query: 93  LVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L +D+ ++     A+  Y         +A+TGT+GK+S A ++     R G  +  IG  
Sbjct: 81  LAIDDLKEHAGEIAAAYYAHPDRSMFTVAITGTNGKTSCAQWLGSALSRLGQPTAVIGTL 140

Query: 151 STISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                    +        TTP  + L ++L  +S+ G T +++EASS GL Q RL G+  
Sbjct: 141 GVGIFTNGGHGSFDVTGYTTPDAVLLQRSLVNVSNLGATALAIEASSIGLHQGRLSGMHF 200

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTN  RDH+DYH    AY  AK  LF+    +   A+I  DDA    +++R  +  
Sbjct: 201 DMALFTNFTRDHLDYHGDMAAYEEAKAMLFDWPGLQH--AVINLDDAMGVRLVQRLQSRQ 258

Query: 265 CRVLSVGYQGKFI--------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             V   GY                 + +  +     +     +      L G+F V N L
Sbjct: 259 ADVGITGYTLSDKKIDGIAVLRATDIRSNQSGTVFQLESSAGNTQVKTQLVGQFNVSNVL 318

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G+ +A GI     +  +E L  VPGR + +G       + +DYAHT ++LE  L  +
Sbjct: 319 GIIGILLAKGIALQDAVNAVEALTAVPGRMQQLGGGEAP-LVVIDYAHTPDALEKTLATL 377

Query: 377 RTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R++ + R   +  VFGCGGDRD GKRP MGK+++  AD  +VT DNPR+E+P  I  +I+
Sbjct: 378 RSVANDRGGELWCVFGCGGDRDPGKRPQMGKVSMA-ADHIVVTTDNPRNEEPANIIGDIV 436

Query: 434 HGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
            GI           +R  AI  A     +QDV+++AGKGHE    V  G K   +D D  
Sbjct: 437 AGITAPKNAPQIIEDRASAILWAGRHAARQDVILLAGKGHEAYQEVK-GRKLPFLDADHA 495

Query: 490 REILG 494
              L 
Sbjct: 496 ALALS 500


>gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 506

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 147/494 (29%), Positives = 228/494 (46%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL   P Q    ++  ++ DSR ++ G ++ A+ G +  G  F+ QA+  GA A
Sbjct: 17  LAELADQLGAEPPQKA-AQVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++     + +       +  P+LVV++ R  +   A+ +YG    +   + +TGTSGK++
Sbjct: 76  VLTDPTGAER----AAATGLPVLVVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   +    +         I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLVEGGLKGVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF     +     +  
Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPERSRLGVVNL-- 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPLP 307
           DD Y + ++K A        + G+         V         T I  + +      PLP
Sbjct: 250 DDEYGRRLVKEATVPVVTFSAEGHPDADWRAADVEVGPMDSTFTVIGPKDERISARSPLP 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V          VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +LK +R +T G++ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLKALRKVTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRQVLREAI 501


>gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
 gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
          Length = 484

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 137/488 (28%), Positives = 223/488 (45%), Gaps = 21/488 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +S DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++  S                +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 67  SLVLTDSH--------QFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY        + 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQN--LV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 235 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 295 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 351

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   I+T+DN R E  E
Sbjct: 352 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIIITEDNNRFESIE 411

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE      NG K+  
Sbjct: 412 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 470

Query: 484 VDCDIIRE 491
            + +II+ 
Sbjct: 471 DEREIIKN 478


>gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi JD1]
          Length = 508

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 134/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I  ID   +++ L  +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+  +I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 485

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 210/497 (42%), Positives = 282/497 (56%), Gaps = 21/497 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+DL   D        ++   +    +I  ++ DSR ++ G +F A+ G K DG  FI
Sbjct: 1   MRLRDLFSDD--------TVMTTEAAATQITGLAVDSRAVKPGELFFALAGAKTDGARFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                   +AI   +     D   T      ++ VDN R+ L+L AS+ Y + P  I AV
Sbjct: 53  A-------QAIAAGAVAVAGDHLPTDEQGVALVRVDNPRRALALAASKFYPRQPATIAAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK+SVA+F +QI QR GL+S  IG    I    +    LTTP PI L + +  ++S
Sbjct: 106 TGTSGKTSVAAFTRQIWQRQGLASASIGTIGLIAPQRSVYGSLTTPDPIALHRMVDEIAS 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + VTH+++EASSHGLDQ+RLDG+++ AG FTNL RDH+DYH T   Y  AK+RLF +L+ 
Sbjct: 166 EDVTHLALEASSHGLDQYRLDGVRIAAGGFTNLSRDHMDYHPTVAHYLAAKLRLFRDLVA 225

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVE 296
               A+I AD   S EV+  A     R+++VG  G     I L+        Q++ +  +
Sbjct: 226 PSGAAVISADHDCSAEVVAAARARKLRLITVGRNGDPGAGIKLRSASIDGFAQRLILEHQ 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G+  + L PL GEFQ+ NALVAAGL I  G D+  V E L +L    GR E VG    G 
Sbjct: 286 GRMQNLLLPLVGEFQIENALVAAGLAIGTGSDADSVFEALTQLEGAKGRLELVG-ERNGA 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I+VDYAH  ++L   L+ +R     ++IVVFG GGDRD GKRP+MG IA   AD  IVT
Sbjct: 345 PIFVDYAHKPDALAKALQALRPYAKRQLIVVFGAGGDRDAGKRPLMGAIAAQQADRVIVT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           DDNPRSE+   IRA I+    G  E G+R EAIR AI  L   D L++AGKGHET  IV 
Sbjct: 405 DDNPRSENAAAIRAAILAAAMGADEIGDRAEAIRAAIAALQPGDALLIAGKGHETGQIVG 464

Query: 477 NGEKKMSVDCDIIREIL 493
           + +     D   +   L
Sbjct: 465 D-QVLPFSDHQAVVAAL 480


>gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella cf. novicida Fx1]
          Length = 487

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 225/491 (45%), Gaps = 21/491 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++          S        +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 62  SLVLTD--------SQEFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY  +     + 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKNYRN--LV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 230 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E
Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDISKRPIMAQIAEEYASKIVITEDNNRFESIE 406

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE      NG K+  
Sbjct: 407 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 465

Query: 484 VDCDIIREILG 494
            + +II++  G
Sbjct: 466 DEREIIKKYAG 476


>gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi 80a]
          Length = 508

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 134/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I  ID   +++ L  +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+  +I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRRQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|148238930|ref|YP_001224317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
 gi|166224792|sp|A5GJA5|MURE_SYNPW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|147847469|emb|CAK23020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
          Length = 499

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 145/500 (29%), Positives = 228/500 (45%), Gaps = 20/500 (4%)

Query: 9   KDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           +    L+  + +  P       +  ++ DSR +  G +F+ + G + DG  F P A+A G
Sbjct: 3   QTLHALLKAVGLPVPAGVANATVTALTCDSRCVGQGSLFIGLPGERVDGGSFWPAALASG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHPENI--LAVTGTS 124
           A A+++         +        +LVV +   F +   AS  + +    +  + VTGT+
Sbjct: 63  AAAVLI---GEQAAAAHPPAPGDSVLVVPDPVAFWAGELASAFWQRPSMRMELIGVTGTN 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    ++ + Q  G  +   G   +     +     TT +   L   L+     G  
Sbjct: 120 GKTTTTHLIEHLSQACGRPAALFGTLVNRWPGHSLTATHTTAAADRLQAQLAEALEGGTQ 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKE 241
             ++E SSH LDQ R+ G +     FTNL +DH+DYH + +AYF AK        L+ + 
Sbjct: 180 VAAMEVSSHALDQQRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKALLFASPYLVGEG 239

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD + +++  R      R          +    +    N     +     +  
Sbjct: 240 PRAVVNVDDPWGRQLADRLGERAWRCSLAHEADLTMA--DLRMTSNGVDGALRTPLGEGR 297

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGR 357
           F  PL G F + N L A G  +  G+   L+L  L     VPGR E +            
Sbjct: 298 FHSPLVGRFNLMNVLQAVGALLQQGLPLPLLLNALPSFRGVPGRMERIVLTGSAAEDHPA 357

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT + L   L+  R    G++I VFGCGGDRD+GKRP M  IA  LAD  +VT 
Sbjct: 358 VLVDYAHTPDGLRNALEACRPFVRGQLICVFGCGGDRDRGKRPQMAAIAAALADQVVVTS 417

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DNPR+EDP +I  +++ G+P   E   + +R +AI  AI      D++++AGKGHE   I
Sbjct: 418 DNPRTEDPGQILDDVVAGLPADAERQVEVDRAKAIALAIAQARCGDLVLIAGKGHEDYQI 477

Query: 475 VTNGEKKMSVDCDIIREILG 494
           +   EK    D +   + L 
Sbjct: 478 LGT-EKVHFDDREQAEQALR 496


>gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
 gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
          Length = 508

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 133/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I   D   +++ L+ +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N  +    + ++++  +
Sbjct: 471 LGKGHESSIIYKN-REIFWNEQEVVKNAI 498


>gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
 gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
          Length = 472

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 155/500 (31%), Positives = 234/500 (46%), Gaps = 39/500 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +    DF E++ +L+          I   SSDSR I+ G+ F  + G ++DG  +I
Sbjct: 1   MKSSN----DFLEMLEELNPRLSGVLPELIYGFSSDSRKIKEGFAFSVLKGTQQDGKAYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+A+GA  ++      +           P + +D+ RK  +L A   +    E   I+
Sbjct: 57  TEALAKGARLLLCEEFLDVA---------IPQICIDDIRKANALLADLFHAHVSENLKII 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYL 177
           AVTGT+GKSS A  +Q +    G S+  IG              LTTP    L    + +
Sbjct: 108 AVTGTNGKSSTAYIIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEV 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  +V +EASSHGLDQ RL G+   A  FTNL  DH+ YH + + YF+AK  LF++ 
Sbjct: 168 AKGGAEYVVLEASSHGLDQQRLYGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDDY 227

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K         D    + ++ +                 +  K+               
Sbjct: 228 DSKIKIV---NSDDAYGKRLRDSQTKVFSQDPDSDCQVLQNSVKLE-------------- 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGID--SALVLEHLEKLHVVPGRFEFVGTNSRG 355
                L  L GE+ +YNA  A  L   I        +   +EK   +PGR E    N+ G
Sbjct: 271 GTECLLPQLLGEYNIYNAAGAMLLVKEILGPSYVGKIKLAMEKFSGIPGRMELFKKNN-G 329

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            ++ VD+AH   +LE ++  +R     ++ +VFGCGGDRD  +R  MG+ A DLAD  I+
Sbjct: 330 AQVIVDFAHAQEALEKVICELRKNCREKLSIVFGCGGDRDPARRYGMGE-ASDLADEVIL 388

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           T+DNPRSEDP++I  +I+           +R +AIR A E L   D L++AGKGHE   I
Sbjct: 389 TNDNPRSEDPQQIINDILSSKKKEARVIFDREQAIRLAWEELEPNDCLLIAGKGHEEKQI 448

Query: 475 VTNGEKKMSVDCDIIREILG 494
             +   +   D  + R+++ 
Sbjct: 449 FKD-HIESFSDRSLCRKLIE 467


>gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
 gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
          Length = 508

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 134/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I   D   +++ L+ +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
          Length = 508

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 133/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I   D   +++ L+ +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N  +    + ++++  +
Sbjct: 471 LGKGHESSIIYKN-REIFWNEQEVVKNAI 498


>gi|87125588|ref|ZP_01081433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
 gi|86166888|gb|EAQ68150.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
          Length = 503

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 146/504 (28%), Positives = 236/504 (46%), Gaps = 18/504 (3%)

Query: 8   YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            +    L+  + + +P Q     I  ++ DSR +  G +F+ + G + DG  F P     
Sbjct: 2   SQTLHSLLRAVGLPWPDQLANVPIESITCDSRCVSRGSLFLGLPGVRVDGGSFWP---RA 58

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGT 123
            A+    +                P+LVV     +++   A+  + +    +  + VTGT
Sbjct: 59  LADGAAAAVIGPAAAAVQPPGPEDPVLVVPEPVAQWIGELAAAFWQRPSSRMTLIGVTGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++    ++ +  ++G  +   G   +     +     TT     L   L+   + G 
Sbjct: 119 NGKTTTTHLIEHLAAQAGRPAALFGTLVNRWPGHSITATHTTAFADRLQAQLAEAVAGGT 178

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--PK 240
              ++E SSH L+Q R+ G +     FTNL +DH+DYH + QAYF AK  LF E L    
Sbjct: 179 QVAAMEVSSHALEQQRVAGCRFAGAVFTNLSQDHLDYHPSMQAYFEAKALLFAEPLLASD 238

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  DD + +++ +R  +   R      Q   + +  +    +  +  +     + 
Sbjct: 239 GVRAVVTMDDPWGRQLAERLGDRCWRCSLEPDQEAELTMTDLVMRSSGVEGRLITPKGEG 298

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR--- 357
            F  PL G F + N + A  +    G+   L+L+ L     VPGR E V   S       
Sbjct: 299 RFASPLVGRFNLMNLMQAVAVLQQQGLPLPLLLKGLGSFRGVPGRMERVVVASAAAAQLP 358

Query: 358 -IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + L+  L+  R    GR+I VFGCGGDRD+GKRP M  IA  LAD  +VT
Sbjct: 359 AVLVDYAHTPDGLKNALEACRPFVEGRLICVFGCGGDRDRGKRPQMASIAAKLADRVVVT 418

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP++I A+++ G+P     + +G+R  AI  A+      D++++AGKGHE   
Sbjct: 419 SDNPRTEDPQQILADVVEGLPSSTDCVVEGDRAAAIAAAVAEAKPGDLVLIAGKGHEDYQ 478

Query: 474 IVTNGEKKMSVDCDIIREILGLIL 497
           I+   EK    D +   + L   L
Sbjct: 479 ILGT-EKVHFDDREEAGKALRSRL 501


>gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces avermitilis MA-4680]
 gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Streptomyces avermitilis
           MA-4680]
          Length = 506

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 140/494 (28%), Positives = 224/494 (45%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  Q+     + R+ ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELAGQMGAATPE-RDAEVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++     + +       +  P+LVVD+ R  +   A+ +YG    +   + +TGTSGK++
Sbjct: 76  VLTDPTGADR----AAATGLPVLVVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  ++   +    +         I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLIEGGLRTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG       F NL  +H+++H   + YF AK +LF     K        
Sbjct: 192 VSSHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFRAKAQLFTPQRSKLGVVNF-- 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           DD Y + +++ A        + G+       + V         T+    ++      PL 
Sbjct: 250 DDEYGRRLVEEAGVPIVTFSAEGHPDADWRAQDVEVGPMDSTFTVIGPKEERITARSPLA 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V          VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDVGQ-PYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T G++ +V GCGGDRD+ KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTEGKLHIVLGCGGDRDRTKRMPMGAAAARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                NR  AI   +      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLAGAAEVPSHERGEVQVFENRAAAIAAVVARARPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRLVLREAI 501


>gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 494

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 133/503 (26%), Positives = 220/503 (43%), Gaps = 31/503 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L  K   + +       +   +  + ++++DSR    G IFVA  G   D H F 
Sbjct: 1   MNANELFEKIRVKQV-------IGTLDINVTDITTDSRTASEGSIFVASKGYTVDSHKFC 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
              + QGA+ IVV+           I  +   ++V +T +  SL A  LY         +
Sbjct: 54  QNVVDQGAKVIVVNH-------QQDINGDVTQVIVPDTLRVASLLAHTLYDFPSHQLTTI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+S+A+ +  I +  G  S  +G      +        TTP  + L K +   
Sbjct: 107 GVTGTNGKTSIATMIHLIYRGLGKGSAYLGTNGFQINEHKTRGANTTPETVSLTKKIKQA 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
             +    +++E SSHGL   RL G++     F+NL +DH+D+H T +AY +AK       
Sbjct: 167 VDENAEAMTMEVSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQL 226

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E L KE  A++  DD +SK +                       K +            
Sbjct: 227 GEDLSKEKYAVLNNDDDFSKYLASVTPYE--IFTYGIDHDAQFMAKNIQESLQGVHFDFD 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                +    P  G+F + N + A     + G     ++  +E L  V GR E +  +  
Sbjct: 285 TPIGTYSVKTPYVGKFNISNIMAAMIAVWSKGTSMEDIVRVVENLEPVEGRLEVLDPS-L 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAHT++ +  ++  ++     ++I + G  G+RD  K P MG +A   AD  I
Sbjct: 344 PIDLIIDYAHTADGMNKLIDAVKPFVKQKLIFLIGMAGERDLTKTPEMGAVACR-ADYVI 402

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNP ++DP+ + AE+  G     ++E  +R E I+ AI++    D +V+A KG E  
Sbjct: 403 FTPDNPANDDPKMLTAELAKGATHNHYVEFDDRAEGIKHAIDIAEPGDTVVLASKGREPY 462

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
            I+    K    D     +++GL
Sbjct: 463 QIMPGHIKVPHRD-----DLIGL 480


>gi|222474927|ref|YP_002563342.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
 gi|255002901|ref|ZP_05277865.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Puerto Rico]
 gi|222419063|gb|ACM49086.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
          Length = 472

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 159/472 (33%), Positives = 240/472 (50%), Gaps = 23/472 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++DSR ++ G+IFV +      G  F+P A+  GA+ IV  +A  L         ++
Sbjct: 15  SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66

Query: 91  PILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I++           AS   +G  PE +  VTGT+GK+SVA F +QI   +G +   +G 
Sbjct: 67  QIIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 150 TSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              I            TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K   
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL  DH+DYH + + Y+  K +LF E+L +E  A++ AD    +E+ + A      
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSREGCAVLNADSEQYEELRELAAGRNII 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              V      +   +     +   V +      +D  FP+ G+FQ+ N L A  +  A G
Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKM-CGEVIYDGAFPVLGKFQISNLLCALAIVAASG 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385
                V   +++L    GR E       G RI +DYAHTS++L+  L +++      + +
Sbjct: 306 SGHRDV--PIDRLASPRGRMEL-----IGDRIIIDYAHTSDALKHALTSLKWHGFPQKTV 358

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +R
Sbjct: 359 LVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDR 418

Query: 446 IEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +AI  A+    + + VL++AGKGHET   +  G+     D   +R  L  +
Sbjct: 419 GDAIHYAVNFAIRNNYVLLIAGKGHETTQQIA-GKSVEFNDGTAVRRCLSEM 469


>gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
 gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
          Length = 508

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 134/509 (26%), Positives = 227/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTNST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I  ID   +++ L  +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 508

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 130/509 (25%), Positives = 230/509 (45%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++ K   +LI  +        + +I+ ++  S+ +  G++F A+ G   DGH FI 
Sbjct: 4   KLNDVLLKLDQDLIKYVK----GSLDLEISGITYSSKLVLPGFVFFALSGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI  G+  IV S              N   + +D+   +KF+S F++  Y +  +   +
Sbjct: 60  IAIQNGSNVIVCSRDLDF------YNPNVTYIKIDDFNIKKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I          +      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLRKKGVKVGFISTVFFDDGNGNLIKNPYRQSTPESTEIHLF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +    V +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSNMVKNKVQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+    +    +  + 
Sbjct: 234 GLFRAVSDDAGFGVINLDDFYSYDFKNAIKKSFTYSLKNSQADFFVSF--INEKTDSTEF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   +  D   ++++L  +  + GR +   
Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSKILNSDIQDIVDNLSCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+I+   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKKFTTNRLISVFGSAGERDFAKRFLQGQISDSYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +         +R +AI  AI +    D++V 
Sbjct: 411 DLIVLCDEDPRGENSMCIIKDIAKGIVNKVANQDLFFIPDRKQAIEKAISLARAGDLIVT 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  NGE     + ++++  +
Sbjct: 471 LGKGHESSIIYKNGEIFW-NEQEVVKNAI 498


>gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium abscessus ATCC 19977]
 gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium
           abscessus]
          Length = 515

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 151/496 (30%), Positives = 231/496 (46%), Gaps = 17/496 (3%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L + +S          +  V+  ++  + G +F A+ G    G  F  +A++ GA A++
Sbjct: 20  DLASLVSAELHGPSATTVGGVTLRAQDARTGDLFAALPGTSTHGAQFASEAVSAGAAAVL 79

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
             +A +  +  A    +  +LV    R  L   A+ +YG+   +  ++ VTGTSGK++  
Sbjct: 80  TDAAGA--ELVAGQGLDIAVLVHPVPRSVLGELAATVYGEPSRHLQVVGVTGTSGKTTTT 137

Query: 131 SFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+   + +G     IG            + LTTP    L + L+ +  +GV  V +E 
Sbjct: 138 YLVEAGLRAAGKRVGLIGTVGVRIDGEDVPSALTTPEAPALQELLAEMVQRGVDTVVMEV 197

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH L  +R+DG +   G+FTNL RDH+D+H   Q YF  K RLF    P+ +   +   
Sbjct: 198 SSHALALNRVDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRSVVCI 257

Query: 250 DAYSKEVMKRAHNAGCRVLS-----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           D  +   M          ++      G    +            Q+   +   +D +   
Sbjct: 258 DDDAGRAMAELAREAGPDVTTVSSLDGGVADWRCSNVAVGHDGGQRFVANGPDRDTELTI 317

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG + V N LVA  +   +G+  A           VPGR E V          VDYAH
Sbjct: 318 ALPGHYNVANCLVAIAILDVLGVS-AATAAPGIATAGVPGRMEAVAAGQ-PFLAVVDYAH 375

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +L  +L+++R+   GR+ VVFG GG+RD+GKR  MGK+A +LAD+ +VTDDNPR+E+
Sbjct: 376 KPGALRAVLESLRSHRDGRLAVVFGAGGNRDRGKRADMGKVAAELADLVVVTDDNPRNEE 435

Query: 425 PEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P  IR EII G  G     IE G+R  AI  A       D ++VAGKGHE+     +   
Sbjct: 436 PAAIRTEIISGTTGSEAQIIEIGDRRAAIDFATLWARPGDTVLVAGKGHESGQKTGD-VT 494

Query: 481 KMSVDCDIIREILGLI 496
               D   +R  L  +
Sbjct: 495 VPFDDRVELRAALEAL 510


>gi|183983188|ref|YP_001851479.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
 gi|183176514|gb|ACC41624.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
          Length = 521

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 153/505 (30%), Positives = 224/505 (44%), Gaps = 16/505 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L  +    L +          +  I  ++  ++ +Q G +F A+ G+   G      
Sbjct: 18  LAELAVQVGAVLADG-PHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHAAD 76

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           AI +GA A++   A      +        P+LV    R  L   A+ +YG   +   ++ 
Sbjct: 77  AIERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVG 136

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS 178
           +TGTSGK++    V+   + +G  +  IG        A   + LTTP    L   L+ + 
Sbjct: 137 ITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPALQAMLAAMV 196

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GV  V +E SSH L   R+DGI+   G FTNL RDH+D+H T   YF AK  LF+   
Sbjct: 197 ERGVDTVVMEVSSHALTLGRVDGIRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPAS 256

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                +++   D  +   M     A   V + G    +            Q+ T      
Sbjct: 257 ALRGHSVVVCIDDEAGRAMADRAGAAITVSATGQPAHWRATDVAPVGAGGQEFTALDPAG 316

Query: 299 DFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG + V N L+A  +  A+G+        L +   VPGR E V        
Sbjct: 317 VGHRVRIGLPGHYNVANCLLALAILDAVGVSPEQAAPGLRE-TRVPGRLEQVDRGQ-DFL 374

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   +L  +L  +R     R+ VVFG GGDRD GKR  MG+IA +LAD+ +VTD
Sbjct: 375 ALVDYAHKPGALREVLSTLRN-PQRRLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTD 433

Query: 418 DNPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR EDP  IR  I+       G    +E  +R EAI  A++     DV+++AGKGHET
Sbjct: 434 DNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHET 493

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
                  E +   D   +   L  +
Sbjct: 494 GQ-RGGAEVRPFDDRVELARALEAL 517


>gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
          Length = 508

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 135/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I  ID   +++ L  +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           DI I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DIIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N  +    + ++++  +
Sbjct: 471 LGKGHESSIIYKN-REIFWNEQEVVKNAI 498


>gi|313673688|ref|YP_004051799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940444|gb|ADR19636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 484

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 127/502 (25%), Positives = 227/502 (45%), Gaps = 30/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++DL+     + ++   ++     +  ++ +S +++ I+    F+ + G   D +  I
Sbjct: 1   MLVRDLLKGIPVKWVSDDKLY-----DIDVDNISFNTKDIKPNSAFLLVKGISFDPYEMI 55

Query: 61  PQAIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY--GKHPENI 117
            +    +  +  +       +          P ++V+N R+   +     +         
Sbjct: 56  DEIFDSKKVKLFITEKPLPEK----------PHILVENARRTFGMICRNFFNIDFSKIKS 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++    +  I + SG  + +IG T   I     +   TTP    + + ++ 
Sbjct: 106 IGITGTNGKTTTNYLIDSILRVSGYKTIRIGTTEYVIVDEKIEANNTTPGIYDIFEMVAK 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +G + V +E SSH LDQ R+ G+      FTNL  DH+DYH+T + Y+ +K +    
Sbjct: 166 GVKKGASAVCMEVSSHALDQDRVYGLNFDVAVFTNLTGDHLDYHKTMEHYYQSKKK---- 221

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L  +  +   A +       +  +       S       + +  V    +     +++ 
Sbjct: 222 -LFTKEYSKNAAINIDYDYGKRLYNEVEIAKYSFSKGKGDVGVVDVSYSLDGINCRVNIG 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +       L G   + N L A      +GI    ++  +E+   VPGR E       G 
Sbjct: 281 DEVISLNSHLVGRHNLENILGAVTATYILGISKDDIIRGVEQFKNVPGRLE--KFEKNGA 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             +VDYAHT ++L+ +L+ ++    GR+I VFGCGGDRD+ KRP M K+A   +DI IVT
Sbjct: 339 YFFVDYAHTDDALKNVLEALKGFKKGRLITVFGCGGDRDRTKRPRMAKVAEVYSDIVIVT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP  I  EI+ G       +   +R  AI+ A +     D++++AGKGHE   
Sbjct: 399 SDNPRTEDPNAIIDEILTGFENRSKVLVDPDRRIAIKKACDEAKAGDIVLIAGKGHEDYQ 458

Query: 474 IVTNGEKKMSVDCDIIREILGL 495
           I+    K    D + + + LG+
Sbjct: 459 IIG-KTKYHFDDREEVAKNLGV 479


>gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 487

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 142/481 (29%), Positives = 229/481 (47%), Gaps = 26/481 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +      I +++ DSR +  G +F A  G++ DGH F+  AIA+GA A++V    +L   
Sbjct: 17  VGDPSVAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIARGAVALLVQHEVAL--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
                 + P LVV + R  +    +  +G+  E   ++ +TGT+GK++ + F+  I   +
Sbjct: 74  ------DIPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTTTSYFIDSILSLA 127

Query: 141 GLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +  IG   +      + +  TTP    L + L  +   GV  V +E SSHG+DQHR+
Sbjct: 128 GRRTGLIGTIEARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVMEVSSHGIDQHRI 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG     G FTNL  +H+DYH T + Y+ AK +LF   LP+ +   +   D      +  
Sbjct: 188 DGTSFRIGVFTNLSPEHLDYHGTIEQYYAAKAQLF---LPERTKQAVIGTDTEWGVRLAT 244

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                           +         +      +    + +    P+ G    YNA  A 
Sbjct: 245 QVRIPAVTYGPAPFSDYRVEDVRYDEYGTIFTVVVGGRRRWRLRVPIYGIHNAYNAAAAV 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +  A+GI+   +   L + H V GRF+ +    +   + VDYAHT +SL  ++   R +
Sbjct: 305 AVAEALGIEGDTIERGLAECHQVAGRFQRIDAG-QPFTVVVDYAHTPDSLRALIATARAL 363

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              GR+I+V G  G RD+ KRP +G+ A   AD+AI+T DNP  EDP +I A+++ G   
Sbjct: 364 SPKGRVILVAGARGRRDRLKRPELGRAAAT-ADVAILTADNPGDEDPGEIVAQLLAGTLD 422

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS-VDCDIIREI 492
                 I + +R  AI  AIE+  + DV+++ G+GHE       G+      D +  RE 
Sbjct: 423 VDHKQIIVELDRRGAIGHAIEIAEESDVVLIVGRGHE--QTFRVGQTVYRLDDREAAREA 480

Query: 493 L 493
           +
Sbjct: 481 I 481


>gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
 gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
          Length = 508

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 134/509 (26%), Positives = 227/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  +V S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVVVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I  ID   +++ L  +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
 gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
          Length = 489

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 170/475 (35%), Positives = 251/475 (52%), Gaps = 24/475 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ +++DSR+++ G++FV +    +    F+  A+  GA  IV  SA +L         
Sbjct: 26  QVSGITADSRNVKPGFVFVCLSEVAK---KFVSDAVKAGARFIVAGSAEALPRV-----D 77

Query: 89  NTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           N  I++      F    AS  Y G+ PE + AVTGT+GK+SVA F +QI   +G +   I
Sbjct: 78  NAQIIIFPKQHDFYYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASI 137

Query: 148 GPTST----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G   T    I +      LTTP  + L K LS L +  V ++ +EASSHG+ Q RL G+K
Sbjct: 138 GTLGTAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLCIEASSHGMAQKRLYGVK 197

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +   +FTNL RDH DYH   + Y+ AK +LF E+L  E  A++ AD     E+ +   + 
Sbjct: 198 VSVAAFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSGRYAELRRLVGSR 257

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                 +      +   K   + +   V I      +D  FP+ G+FQ+ N L A  +  
Sbjct: 258 NTITYGINVGDVRLTRLKSSTLGHNVAVEI-CGKVVYDGAFPVLGKFQIPNLLCALAIVT 316

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSG 382
           A G   + +   ++KL    GR E       GGR+ VDYAHT  +LE  L +++      
Sbjct: 317 ASGARCSDI--PIDKLVSPRGRMEL-----IGGRVIVDYAHTPAALEHALTSLKWHGFPQ 369

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           +I++VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPR+E+PE IR EI+      IE 
Sbjct: 370 KIVLVFGCGGDRDREKRGAMGMVAGKYADVIIVTDDNPRNENPEAIRKEILSHCERAIEI 429

Query: 443 GNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            NR +AI  A+    + D +L++AGKGHET   +  GE     D D++R  L  +
Sbjct: 430 PNRSDAIHYAVNFAVRNDHMLLIAGKGHETTQQIA-GESIEFNDGDVVRSCLRAM 483


>gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
 gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
          Length = 494

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 216/477 (45%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++++ ++++DSR  + G IFVA  G   D H F    + QG   IVV+    L+      
Sbjct: 20  DKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQGCSIIVVNREQDLKG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
                 ++V +T +  SL A  L+      ++    TGT+GK+S+A+ +  I ++   SS
Sbjct: 75  --EVTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSIATMIHLIYRKLNKSS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +     +G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTMEVSSHGLSLGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSEYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                                V       +         +    P  G+F + N + A  
Sbjct: 253 PYEVFTYGI--DHDAQFKAINVEESLQGVKFEFDTPFGSYQVESPYVGKFNISNIMAAMI 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + G     ++E ++ L  V GR E +  N     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGATFEDIIEAVKSLEPVEGRLEVLDPNL-PIDLIIDYAHTADGMNKLIDAVKPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G     
Sbjct: 370 KQKLIFLVGMAGERDMTKTPEMGSVAC-HADYVIFTPDNPANDDPKMLTAELAKGATHSN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YIEFEDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|118618800|ref|YP_907132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium ulcerans Agy99]
 gi|118570910|gb|ABL05661.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium ulcerans Agy99]
          Length = 559

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 151/505 (29%), Positives = 222/505 (43%), Gaps = 16/505 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L  +    L +          +  I  ++  ++ +Q G +F A+ G+   G      
Sbjct: 56  LAELAVQVGAVLADG-PHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHTAD 114

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           AI +GA A++   A      +        P+LV    R  L   A+ +YG   +   ++ 
Sbjct: 115 AIERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVG 174

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLS 178
           +TGTSGK++    V+   + +G  +  IG        A   + LTTP    L   L+ + 
Sbjct: 175 ITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPTLQAMLAAMV 234

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GV  V +E SSH L   R+DGI+   G FTNL RDH+D+H T   YF AK  LF+   
Sbjct: 235 ERGVDTVVMEVSSHALTLGRVDGIRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPAS 294

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                +++   D  +   M         V + G    +            Q+ T      
Sbjct: 295 ALRGHSVVVCIDDEAGRAMADRAGVAITVSATGQPAHWRATDVAPVGAGGQEFTALDPAG 354

Query: 299 DFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                    PG + V N L+A  +  A+G+        L +   VPGR E V        
Sbjct: 355 VGHRVRIGSPGHYNVSNCLLALAILDAVGVSPEQAAPGLRE-TRVPGRLEQVDRGQ-DFL 412

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH   +L  +L  +R     R+ VVFG GGDRD GKR  MG+IA +LAD+ +VTD
Sbjct: 413 ALVDYAHKPGALREVLSTLRN-PQRRLAVVFGAGGDRDPGKRGPMGRIAAELADLVVVTD 471

Query: 418 DNPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR EDP  IR  I+       G    +E  +R EAI  A++     DV+++AGKGHET
Sbjct: 472 DNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGDVVLIAGKGHET 531

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
                  E +   D   +   L  +
Sbjct: 532 GQ-RGGAEVRPFDDRVELARALEAL 555


>gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
 gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
          Length = 508

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 135/509 (26%), Positives = 228/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  IV S             SN   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVIVCSRDVDF------YSSNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV   +  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYHIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSNMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDFYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTD--FTRF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I   D   +++ L+ +  + GR +   
Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSQILNSDIQDIVDKLDCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +  T+ R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFTTNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIVLCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREVFW-NEQEVVKNAI 498


>gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
 gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
          Length = 493

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 131/505 (25%), Positives = 224/505 (44%), Gaps = 26/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +  +    L+           E ++ ++  DSR I    +FV +VG   DGH +I
Sbjct: 1   MKLSKICEEIEYTLLQGS-------LETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P A+ + A  IV+      ++ +A I  N  +L V++ R  L+L ++ L+         +
Sbjct: 54  PDAVEKEASVIVLEK----EEEAAQIPENITVLKVESARLALALMSAALFDHPARKLVTI 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            +TGT GK++    ++++ + +G     IG    +       ++ TTP    L +  + +
Sbjct: 110 GLTGTKGKTTTTYMIKKVLEMAGKKVGLIGTIGAMIGEEHLPSKNTTPESYELHRMFAAM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G  +V +E SS GL   R  GI    G FTNL  DHI      +     +    + L
Sbjct: 170 VEAGCEYVVMEVSSQGLKLDRTAGILFDYGIFTNLSPDHIGP---AEHASFEEYMECKSL 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--HLKKVCAIHNKQQVTISV 295
           L ++    I   D    + + + H    +  S   +   +   +  +             
Sbjct: 227 LFRQCRIGIVNADDEHVDGILKGHTCEVKTFSAEREADLMASDIGFINEDGKLGMHFNVT 286

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D      +PG F VYN++V   +C   GI    +LE L K+ V  GR E +  +   
Sbjct: 287 GCMDCQAKVHIPGRFSVYNSMVTMLVCHLAGISDEAILEGLSKVQV-KGRVEMLPVSK-D 344

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + +DYAH   S   +L  +      R+I V+G GG+R + +R  MG++  ++AD+ ++
Sbjct: 345 YTLIIDYAHNEVSTRSVLTTLMEYHPKRLICVYGGGGNRSKLRRYDMGEVTGEMADLCVL 404

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T DNPR E+   I  +I  G+      +IE  +R EAI   ++     D++V+ GKGHE 
Sbjct: 405 TCDNPRDEEIRDINNDIKVGLARSNGKYIEIDDRKEAIAYCMKNAKPGDMIVLLGKGHED 464

Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496
              +  G K    + + + EIL  +
Sbjct: 465 YQEIK-GVKYHFDEREAVAEILDEM 488


>gi|261414980|ref|YP_003248663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371436|gb|ACX74181.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326475|gb|ADL25676.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 473

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 224/473 (47%), Gaps = 17/473 (3%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++  +  +  DSR ++ G +F +I            +A A+   AI   +   + +  A 
Sbjct: 8   QKLSVTGLCDDSRRVKPGNLFFSIPAEGY-------EAFAR--SAIAAGAVAVVGETMAP 58

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLS 143
               +  + V + +      A   Y      ++  A+TGT+GK++ A  +  + +  G  
Sbjct: 59  EGLTSKWIQVPDVKAARLEAAKIFYKDPFSKLICHAITGTNGKTTSAFLMNAMLEAEGRK 118

Query: 144 SFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +  +G   + I   +    LTTP  + L +  S   ++G T + +EASSH L Q R+ GI
Sbjct: 119 TALLGTIKNKIGDKSVPASLTTPGLLDLYEFASRAVAEGCTDLVMEASSHSLHQGRVAGI 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  +G F+NL +DH+DYH+T  AYF AK  LF + L +   A+I  DDA+ +++      
Sbjct: 179 RFRSGLFSNLTQDHLDYHKTMDAYFEAKKLLFTKYLAENGVAVINIDDAHGEKLFNALDC 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               V  +G     +                        F  PL G+F V N L+     
Sbjct: 239 RKVAVSRLGKAKADVKPFGEIKSTEDGLEFTLPMIATDKFETPLCGDFNVDNLLLVLAWA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+ +     +        VPGRFE V  +  G  + VDYAHT ++LE +L   R++  G
Sbjct: 299 HALCV-PEDAMRKAITTVRVPGRFEKV-WSKDGKHVIVDYAHTPDALERVLNVARSLCRG 356

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFI 440
           ++  VFGCGGDRD+ KRPIMG IA  +AD A +T DNPR+E P  I A++  G+    F 
Sbjct: 357 KLSTVFGCGGDRDKTKRPIMGGIAERIADKAWLTSDNPRTEKPADIIADVRAGMTTDKFE 416

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              NR EAI  A   L   D LV+AGKGHE   I+    K    D +I  + +
Sbjct: 417 VVENREEAINRACAELKSGDWLVIAGKGHEDYQIIG-KTKHHFDDREIAVKAM 468


>gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii L2-6]
          Length = 492

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 143/502 (28%), Positives = 220/502 (43%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L+           E  I ++  DSR    G +FV IVG + D H + 
Sbjct: 1   MKLEQLLEGVSYTLVQGS-------LELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            Q +A G  A+VV     L            +L V+++R  L+L +  L+G     +  +
Sbjct: 54  AQCVADGVTALVVQHDIDLSTVP-----GAAVLKVESSRYALALMSGNLFGNPSRRMTMI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ + + +G     IG          Q+   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYFLGHHQETANTTPESYELQKTFREF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SS GL   R+ GI    G FTNL  DHI   + +        +     
Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGIHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                      DD  ++ +++                      ++   H+   V   V G
Sbjct: 229 RCTTGVVN--IDDENTEALLEGHTCKLVTYGCSEKADYRAGTYQLLRTHDFLGVRFHVSG 286

Query: 298 KD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           KD  D    +PGEF VYNAL A  +   +G+    + E L +  VV GR E V  +    
Sbjct: 287 KDDMDVKVNMPGEFSVYNALAALTVGKVLGLPDEAIHEGLGR-CVVKGRVELVPISR-KF 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +AD +I+T
Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYEPHRLVVVFGCGGNRSKLRRYGMGEICARMADFSILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V GKGHE
Sbjct: 405 EDNNRFEKVEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G K   ++ +++ E 
Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485


>gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 508

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 135/509 (26%), Positives = 227/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I+ V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  IV S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQKGSNVIVCSRDVDF------YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I  ID   +++ L  +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 138/503 (27%), Positives = 213/503 (42%), Gaps = 26/503 (5%)

Query: 8   YKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            K    +   ++I     + +  I+ +S DSR    G ++ A+ G   DGH F+ QAIA 
Sbjct: 2   EKSLSAITGDINIEARNGKTDALISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAA 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA A++     SL             L V N+R  +S  A+  Y        ++ VTGT 
Sbjct: 62  GARAVIHQVPLSLYHPE------IAYLQVTNSRISMSPVAAAFYDHPSRVLKVIGVTGTD 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GKSS  SF+ Q+    GL    +          S     R +TP    + K L  +   G
Sbjct: 116 GKSSTVSFLHQLLTGMGLKCGFLSTVQFNTGGESVKNHFRQSTPEATEIHKTLRAMVEAG 175

Query: 182 VTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +H  +E++SHGL    +RL  I   A   TN+  +H+++H T + Y + K  LF     
Sbjct: 176 CSHAVIESTSHGLSPKNNRLGDICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQ 235

Query: 240 KESPAIIYADDAYSKEVM--KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               A+I  DD              +     + G Q      + +         T+    
Sbjct: 236 NRGIAVINIDDKNHNLFAGTASGCRSISFYSATGAQKADYRARGIEETPASIAFTLDSPK 295

Query: 298 KDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +      + G F V N L A A +C   G++   +      L  V GR   V       
Sbjct: 296 GEARVDLNVAGRFNVDNILAASAAVCELEGVEPKTLEPLFPGLKAVKGRMVPVDEGQA-F 354

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++ VDYAHT  +   +   IR +  GR+  +F   G+RD  KRP++G IA +  D+ ++ 
Sbjct: 355 QVIVDYAHTPGAFRRLFPAIRPLVRGRLFALFSSAGERDLEKRPVLGSIADEYCDVIVLA 414

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           D++PR E+P  +  E+  G     +        NR EA+R A  M+ K D +++ GKGHE
Sbjct: 415 DEDPRGENPMALLEEVASGCRNKTKGKSLFLIENRKEAMRHAFSMMKKDDCILLLGKGHE 474

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              I  NG      D + +  IL
Sbjct: 475 GSIIYANGPVPW--DEEEMARIL 495


>gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 512

 Score =  271 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 157/477 (32%), Positives = 231/477 (48%), Gaps = 30/477 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V+ DSR ++ G+ FVA+ G K DG  F+P+A+ +GA  +V                
Sbjct: 43  RVCGVTHDSREVEPGFAFVAVPGFKRDGVEFVPEALRRGAALVVAEREVPEA-------- 94

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ-RSGLSSF 145
             P+ VV + R  L+  A   +G     +    VTGT+GK++    +  +     G    
Sbjct: 95  --PVAVVPDARAALAALACAFHGHPSRRMEVYGVTGTNGKTTTCYALHAVLAGAFGEERC 152

Query: 146 QIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            +  T+ +      +    TTP    +  AL+ +  +GV  V++E SSHG+   R++GI+
Sbjct: 153 GLMTTAEVVAGGERRPAVRTTPEATEVQAALAGMRERGVERVAMEVSSHGIALRRVEGIR 212

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTNL RDH+D H T + Y+  K RLF   L    P +  ADDA+ + +       
Sbjct: 213 FAGAVFTNLSRDHLDLHGTMEEYYRTKRRLF---LWARGPKLSNADDAWGRRLAGEVEG- 268

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                     G    ++ V       +  +    +      PL G++ V NA  AA L +
Sbjct: 269 --VRTFGSAVGADYRIEGVRPSGAGTRFVLRRGEEALRIEVPLFGDYNVQNAAGAAALAL 326

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---- 379
            +G+    V   L  +  VPGRFE VG    G  + VDYAHT   LE +L+  R +    
Sbjct: 327 ELGVPGETVARALRGMPQVPGRFERVGGP--GFEVIVDYAHTDVGLEAVLRVAREVARRG 384

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
             GR+I VFG  G+RD  KRP+MG++A  LAD  I+T D+  SEDPEKI  E+  G+   
Sbjct: 385 RPGRVICVFGAAGERDGAKRPLMGRVASRLADRGIITTDDAYSEDPEKIAREVAAGVEDG 444

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                 +R EAIR A+    + DV+VVAGKGHE V  +  G+     D  +IREIL 
Sbjct: 445 RLEIVLDRREAIRRALSEAGEGDVVVVAGKGHERVQHLPWGDVPFH-DATVIREILE 500


>gi|73663076|ref|YP_301857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495591|dbj|BAE18912.1| UDP-N-acetylmuramyl tripeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 495

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 219/477 (45%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           E+ I ++++DSR  Q G +FVA  G   D H F    + QG + I+VS           I
Sbjct: 21  EKNITDITTDSRTAQHGSVFVASKGYTVDSHKFCQDVVNQGCQVIIVSH-------QQEI 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V +T +  SL A+ LY    + ++    TGT+GK+S+A+ +  I ++ G  S
Sbjct: 74  TGDVTQVIVPDTLRVASLLANTLYNYPSKQLITYGVTGTNGKTSIATMIHHIYRKLGKGS 133

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K ++    +    +++E SSHGL   RL G+ 
Sbjct: 134 AYLGTNGFQINEDKSKGANTTPETVSLTKKINEAVEKNAEAMTLEVSSHGLSLGRLRGVD 193

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L +E   ++  DDA+S+ +    
Sbjct: 194 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSQEKFVVLNKDDAFSEYLASVT 253

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                            H           Q T      +F    P  G F V N + A  
Sbjct: 254 PFEVFTYGVTNDAQFTAHHINESLQGV--QFTFKTPEGEFQVKSPYVGLFNVSNIMAAMI 311

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + GI    +++ +E L  V GR E +  +     + +DYAHT++ ++ ++  ++   
Sbjct: 312 AVWSKGIALNDIVDAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMDKLIDAVKPFA 370

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG++A   AD  I T DNP ++ P+ +  E+  G     
Sbjct: 371 KQKLIFLCGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDAPKTLTQELAKGATHDN 429

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +IE  +R E IR AI +    D +V+A KG E   I+    K    D     +++GL
Sbjct: 430 YIEFEDRAEGIRHAINIAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 481


>gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
 gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
          Length = 496

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 126/479 (26%), Positives = 212/479 (44%), Gaps = 26/479 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++++++DSR  + G IFVA  G   D H F    I QG   +VV+           +
Sbjct: 20  DKNVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQGCSIVVVNRELE-------L 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 +VV +T +  SL A  L+           VTGT+GK+S+A+ +  I ++   +S
Sbjct: 73  DGEVTQVVVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLNKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS--YLSSQGVTHVSVEASSHGLDQHRLDG 201
             +G      +        TTP  + L K +     +      +++E SSHGL   RL G
Sbjct: 133 AYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDADAEAEAMTMEVSSHGLSLGRLRG 192

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD +S  +  
Sbjct: 193 VEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVVLNNDDDFSHYLAS 252

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                                K +       +   S    D+    P  G F + N + A
Sbjct: 253 VTPYEVFTYGIDNEAQFM--AKNIDESLQGVEFDFSTPFGDYRVKSPYVGRFNISNIMAA 310

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                + G     ++  +  L  V GR E +  +     + +DYAHT++ +  ++  ++ 
Sbjct: 311 IIAVWSKGASMEEIINAVTSLEPVEGRLEVLDPS-LPIDLIIDYAHTADGMNKLIDAVKP 369

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
               ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + AE+  G   
Sbjct: 370 FVKQKLIFLVGMAGERDMTKTPEMGSVACR-ADYVIFTPDNPANDDPKMLTAELAKGATH 428

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             ++E  +R E I+ AI++    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 DNYVEFDDRAEGIKHAIDVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 482


>gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 492

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 153/504 (30%), Positives = 240/504 (47%), Gaps = 27/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L+      ++              I    + D   +  G +F+A+ G+ E G   
Sbjct: 1   MKLSELLAGHDHHILQGDPETTW------ITAGTTFDVGRVTPGSLFIAVPGHGEGGPGS 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  A+A+GA A++V         SA   +    + V +TR   ++ ASR +G     +  
Sbjct: 55  VGPALARGAAAVLVDGGAPDLPMSA---AGVCAVSVPDTRTAAAVVASRYFGAPGRQMDM 111

Query: 118 LAVTGTSGKSSVASFVQQICQR-SGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172
           +A+TGT+GK+SV+  V+ + +   G +   IG               + LTTP    L  
Sbjct: 112 VAITGTNGKTSVSYMVESVLRLSEGATVGVIGTAGSRIGDEPILMPRSVLTTPESPDLQY 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +  +G   V +EA+S  L  HR+D   +  G FTNL +DH+D H T + Y +AK+R
Sbjct: 172 LLGCMRDRGAGSVVLEATSMALLTHRVDCAFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF         A++ ADD     + +           +  +       ++    +  +  
Sbjct: 232 LF---QGLCRRAVVNADDPVGAGI-QAMMPGAVTTYGLDTEAADYRATELTVDASGTRFV 287

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+ +    P+PG + V NAL     C A+G D   ++  L+++  VPGRFE     
Sbjct: 288 LHHDGRKYPAAIPVPGRYSVANALATVAACHALGHDLGGLVAALDRMPPVPGRFERFR-T 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            RG  + VDYAH+ +SL+ +L  IR    GR+I VFGCGGDRD  KR  MG+IA   +D+
Sbjct: 347 PRGTSVIVDYAHSPDSLDKVLTTIRGFAPGRVITVFGCGGDRDTTKRAEMGEIAGTHSDL 406

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I+T DNPR+EDPE I  +I  G+      F    +R  AI  A+      D++++AGKG
Sbjct: 407 CILTSDNPRNEDPEAILDQITPGLTATGTPFERFTDRRRAIAFALSAAGPDDIVLIAGKG 466

Query: 469 HETVHIVTNGEKKMSVDCDIIREI 492
            E   IV   +     D   +RE+
Sbjct: 467 SEPHQIVGE-KLLPFSDMATVREL 489


>gi|56416559|ref|YP_153633.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
 gi|81359238|sp|Q5PBF1|MURE_ANAMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56387791|gb|AAV86378.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
          Length = 472

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 160/472 (33%), Positives = 238/472 (50%), Gaps = 23/472 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++DSR ++ G+IFV +      G  F+P A+  GA+ IV  +A  L         ++
Sbjct: 15  SGITADSRSVKPGFIFVCLS-EAAKG--FVPDAVKAGAKFIVAGNAGGLPHV-----DHS 66

Query: 91  PILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I++           AS  Y    PE +  VTGT+GK+SVA F +QI   +G +   +G 
Sbjct: 67  QIIICPMQHDLYYKLASEFYHASQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 150 TSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              I            TTP  + L K LS L    V ++ +EASSHG+ Q RL G+K  A
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASA 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL  DH+DYH + + Y+  K +LF E+L  E  A++ AD     E+ + A      
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAVLNADSEQYGELRELAAGRNII 246

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              V      +   +     +   V +      +D  FP+ G+FQ+ N L A  +  A G
Sbjct: 247 TYGVDTGDVKLARLERNTQGHNITVKV-CGEVIYDGAFPVLGKFQISNLLCALAIVAASG 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385
                V   +++L    GR E       G RI +DYAHTS++L+  L +++      + +
Sbjct: 306 SGHRDV--PIDRLASPRGRMEL-----IGDRIIIDYAHTSDALKHALTSLKWHGFPQKTV 358

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +VFGCGGDRD+ KR  MG +A   AD+ IVTDDNPRSE+PE IR EI+      IE  +R
Sbjct: 359 LVFGCGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLHCENAIEIPDR 418

Query: 446 IEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +AI  A+    + + VL++AGKGHET   +  G+     D   +R  L  +
Sbjct: 419 GDAIHYAVNFAIRNNYVLLIAGKGHETTQQIA-GKSVEFNDGTAVRRCLSEM 469


>gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
 gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
          Length = 501

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 136/486 (27%), Positives = 219/486 (45%), Gaps = 26/486 (5%)

Query: 18  LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            S   +QW   ++   + +DSR +  G  F+A  G   DG   +  A+ +GA A +V   
Sbjct: 7   SSHDAVQWLRERVTGTLQTDSRLVAPGDGFIAWPGAATDGRAHVADAMVRGATACLVEQT 66

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134
                  A   +   +  +   +      A++ +G   ++  +LAVTGT+GK+S A ++ 
Sbjct: 67  G----VEAFGFTGEHMAALPGLKAATGPMAAQWFGHPAQHLAVLAVTGTNGKTSTAWWLA 122

Query: 135 QICQ-------RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                       +      +G     +    +   +TTP P+ L +A    + QG+   +
Sbjct: 123 GALNSLSKQELHAPTRCALVGTLGMGVPPALESTGMTTPDPVRLQRAFRQYADQGLGACA 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASS GL + RLDG  +    FTN  +DH+DYH +   Y+ AK  LF+   P    A+I
Sbjct: 183 IEASSIGLAESRLDGTPIRVAIFTNFTQDHLDYHGSMADYWLAKRALFDW--PGLQAAVI 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD    ++          + S+   G      + +       + T+    +       
Sbjct: 241 NVDDPAGAQLHAELTGGALDLWSISAHGAARLAAQDIALGPQGLRFTVVEGAQRVPLQTR 300

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G + V N L       + G+  A  +     L  VPGR + +        + VDYAHT
Sbjct: 301 VIGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRL-VAPGQPLVAVDYAHT 359

Query: 366 SNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++L+  L+ +R +     G++  VFGCGGDRD GKRP+MG +A   AD  +VT DNPRS
Sbjct: 360 PDALDKALQALRPLAVERGGQLWCVFGCGGDRDAGKRPLMGAVAQQHADWVVVTSDNPRS 419

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           E+P  I  +I+ G         + +R  AI  AI   +  DV+++AGKGHE       G 
Sbjct: 420 EEPAAILHQILQGTIAGETVRAEPDRAAAIALAIGEADAADVVLIAGKGHEDYQETA-GV 478

Query: 480 KKMSVD 485
           ++   D
Sbjct: 479 RRPFDD 484


>gi|58584749|ref|YP_198322.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419065|gb|AAW71080.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 496

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 165/513 (32%), Positives = 262/513 (51%), Gaps = 44/513 (8%)

Query: 1   MKLQDLIYKD------------FPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWI 45
           M L++L++                +L     I           +I  V+ + + ++  ++
Sbjct: 1   MILRELLHDIGHFSVIPVLGTGIQQLALHTGITLGNCTVDFNIEIKGVTCNPKKVKEDYL 60

Query: 46  FVAIV--GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
           FV +   G +  G       I   A AI+ S +      +         +   N R+   
Sbjct: 61  FVCVSEEGERCVGG------IK--ASAIIASFSAIPAQGAEI------YIFYPNPREIYG 106

Query: 104 LFASRLYGKHPENILA-VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA---QD 159
              SR Y       +A VTGT+GK+SV  F +QI Q +G ++  +G   T  +      +
Sbjct: 107 KIVSRFYQFKQLKCVAAVTGTNGKTSVVEFCRQIWQNAGCNAASVGTLGTCVNNERKDNN 166

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           + LTTP    L   L  ++S+ + H+++EASSHG+DQ+R+ G++L A +FTN  +DH+DY
Sbjct: 167 SNLTTPDADDLYFTLRDVNSKNIEHLALEASSHGIDQYRIHGLELNAAAFTNFSQDHLDY 226

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H+    YF AK RLF E+LP+    ++ +D      ++K A     +V++ G  G  I L
Sbjct: 227 HKDVNEYFEAKKRLFYEVLPEGKTVVLNSDIDEYYALLKIAEKRSNKVITYGKTGSDITL 286

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +     + Q +TI +  + +   +P+ G+FQ YN L A G+ IA           ++K 
Sbjct: 287 LRQIPTPDGQHLTIKIGDEVYGMFYPVLGQFQAYNLLCAIGIVIASK--LDYQRICIDKF 344

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +PGR E V         +VDYAHT ++L+  L +++   S ++++VFGCGG+RDQ KR
Sbjct: 345 VSLPGRMEKVKP-----FAFVDYAHTPSALKQALLSLKWHFSKKVVLVFGCGGNRDQAKR 399

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NK 458
             MGK+A   AD  IVTDDNPR EDP KIR +I+   P  +E G+R EAI+  I +  ++
Sbjct: 400 AKMGKMAKMYADKVIVTDDNPRDEDPAKIRYDILLCCPNALEVGDRREAIKKGINIAYDE 459

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             VL+VAGKGHE   I+ N +     D ++I+ 
Sbjct: 460 NMVLLVAGKGHEKFQIIGN-KTFEFSDVEVIKN 491


>gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 476

 Score =  270 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 148/475 (31%), Positives = 219/475 (46%), Gaps = 23/475 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V   ++ +Q G IF+   G K  G  F+ +A+A+GA AIV   + SL      I 
Sbjct: 8   TEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLP----IID 63

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P + V NT  FLS  +++L     E  +++A+TGT+GK++V+ FV Q+       + 
Sbjct: 64  KEIPFVWVPNTALFLSYASAKLAAFPAEALSVIAITGTNGKTTVSHFVSQLLNALHKKAA 123

Query: 146 QIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            IG                +LTT     L   L     +GV+HV +EASS GL QHRLD 
Sbjct: 124 VIGTIGFYLDGEKQQTSYEQLTTLQAKELHPILKQCVRKGVSHVVLEASSMGLQQHRLDH 183

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             +  G F NL  DH++ H   +AY  AK R     L   S  ++   D      +    
Sbjct: 184 CDIDCGVFLNLSEDHLEDHGGLEAYKRAKKR-----LADLSKKLVLNGDDNFCRSVGIYD 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                           H++ V     K  + +     +     P  G++ V N + A   
Sbjct: 239 KKKSCSFGFDNHNDL-HIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNTVAALMA 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +GI    ++EH+  L +  GR E +  N  G  +YVDYAHT+ +L+ +L+      S
Sbjct: 298 VWRLGIPIDDIIEHMWSLKLPEGRLEKI-DNPVGIDVYVDYAHTAEALQAVLQTFDR--S 354

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
             I +VF CGG+RD+ KR  MG +A   AD+  +T DNPR EDP  I   II G      
Sbjct: 355 KTIYLVFSCGGNRDKAKRFAMGAVASKYADVIYLTTDNPRDEDPIIINESIIAGFTEQQY 414

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +    +R  AI  A+    K D+++VAGKGHE    + N +K    D   I++  
Sbjct: 415 YEIYLDRKVAIHQALAKAKKGDIVLVAGKGHEQTQQIKN-QKFPFSDQQCIKDYF 468


>gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 478

 Score =  270 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 143/500 (28%), Positives = 226/500 (45%), Gaps = 35/500 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++ K          I   +  + +I  V++DSR I+ G +FVAI G + DGH FI
Sbjct: 1   MNLTDILDKINY-------IDYTKNNDSEITNVTNDSRKIKKGGVFVAISGMEFDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AIA GA  IVV+   +  D       +   + V ++R  L+  ++ +     +   ++
Sbjct: 54  DKAIANGANTIVVTEDVTEID-------DINYIKVKDSRVALAQISNVVCDFPSKKLRVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ AS +  I +        IG   T  +    +   TTP    + K L   
Sbjct: 107 GVTGTNGKTTTASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  VE SSHGL  HRLDGI      F NL  +H+D+H+  + YF+AK      +
Sbjct: 167 VEKKIDNAVVECSSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAK-----MI 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + +   I   D       K                      ++          +  E 
Sbjct: 222 LFENAKKKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELI------DGKMHFEI 275

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+  F+      F VYN++ A      +G +   + + LE    V  RFEFV  N  G  
Sbjct: 276 KNVKFVLNRFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NEMGIN 334

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +D+AHT  + E I K++      R I V+G  GDR    R  +GKI+ +    ++VT 
Sbjct: 335 IVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVTT 392

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P+ +  E I  +II GI      ++   +R  AI+ AIEM N+ D +++ GKG E   
Sbjct: 393 DDPKFDTYENIADDIISGIEEENGEYVRIKDRKSAIKHAIEMANEGDFVLLLGKGQENFI 452

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            +   EK    + + + E+L
Sbjct: 453 KLKGNEKTPYSEKETVNEVL 472


>gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
 gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
          Length = 487

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 138/502 (27%), Positives = 231/502 (46%), Gaps = 31/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  +I     + +       +   + +I  +  DSR ++ G +FVAI G + DGH FI
Sbjct: 1   MKLSQVI-----KCLKDSGEMDVFTNDPEIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA A+V   A  L         N P + V ++R  L   AS  Y +       +
Sbjct: 56  GQAVENGAAAVVGEEALEL---------NVPYIKVTDSRTSLGKLASCFYDRPSRKHKII 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A  ++ I + +G +   +G   + I++       TTP  + + K LS  
Sbjct: 107 GITGTNGKTTTAYILKHILETAGRTCSLLGTVSNIINNREYKTSNTTPDALQIQKMLSKS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  V +E SSH L+Q R +G++L  G FTNL  DH+DYH+    YF    +    L
Sbjct: 167 L---DEFVVMEISSHALEQSRTEGLELDYGLFTNLAHDHLDYHENMDQYFL-DKKKIFTL 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      +I   +++ +++ +        ++ +G         K  AI+ +    + ++G
Sbjct: 223 LKDGGKGVINLYNSWGEKMAEDLQKEKIPLILLGDDQCCS--IKDVAINGRTVFILEMKG 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           + F+  FPLPG   VYNA +A    + +GID+A +++ L     +PGRFE +     G +
Sbjct: 281 QSFEIEFPLPGHHNVYNAAMAFLTGVDLGIDTADIIKALAGFPGIPGRFETIIH-PSGAK 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAHT ++ E  L+  R   + RI  ++G  G RDQ KR  M K +        +T 
Sbjct: 340 FVVDYAHTVDAFEYCLEAARQQGAERIFQIYGFRGGRDQSKRMDMIKASAKYCHKFYLTA 399

Query: 418 DNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           D+   E  +++ +++       G        +R  AI+ A     + D + + GKG E  
Sbjct: 400 DDLNDESEDEMISQLHRLNKEFGCGKGEVIPDRTLAIQKAWREAGESDWIFITGKGPEAY 459

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
                       D + ++ +L 
Sbjct: 460 Q--KPFALPAESDLETLKLLLE 479


>gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii SL3/3]
          Length = 492

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 139/502 (27%), Positives = 220/502 (43%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L+           + +I ++  DSR    G +FV IVG + D H F 
Sbjct: 1   MKLEQLMEGVPFTLVQGS-------LDTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
               A+G  A+V+     L            ++ V+++R  ++L ++ L+G     +  +
Sbjct: 54  ADCAAKGVSALVIQHDIDLSALP-----GVTVVKVESSRYAMALMSANLFGNPARQMTMI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ + + +G     IG           D   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SS GL   R+ G+    G FTNL  DHI   + +        +     
Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                      DD  +  +++                      K+   H+   V   V G
Sbjct: 229 RCDVGVVN--IDDENTAALLEGHTCKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTG 286

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K + D    +PGEF VYNAL A  +   +G+  A + + L K  VV GR E V  +    
Sbjct: 287 KDEMDVKVNMPGEFSVYNALAALAVGKVLGLPDAAIHDGLGK-CVVKGRVELVPISK-KF 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +AD +I+T
Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMADFSILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V GKGHE
Sbjct: 405 EDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G K   ++ +++ E 
Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485


>gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
 gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
          Length = 474

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 134/492 (27%), Positives = 212/492 (43%), Gaps = 40/492 (8%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVG---NKE---DGHLFIPQAIAQGAEAIVV 73
           +F   +    +  ++ DSR +Q G+IFVAI G         +GH FIP+AIA+GA  IV 
Sbjct: 7   LFGPSYPTTPVTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIVG 66

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +    L           P L V + R  L+  A+  +G HP  +L + G +G     +  
Sbjct: 67  TQDLELP---------VPYLKVADPRSALADLAAAFWG-HPAKMLQLVGITGTKGKTTVT 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDN------RLTTPSPIYLAKALSYLSSQGVTHVSV 187
                    ++   G  ST+     +         TTP    + + L+     G     +
Sbjct: 117 VLAHHLLQFAAPPAGRISTVGVRVGEEEYFLSGHFTTPEAPQVQEMLARFVKAGCKQAVL 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+ G++   G +TNL  DH+D+H + + YF AK  L    L +    ++ 
Sbjct: 177 EVSSHALALERVRGLEYEVGVWTNLSEDHLDFHGSMENYFAAKQTL----LRRSRFGVLN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D Y  ++                 G     + +          +      F    P+ 
Sbjct: 233 REDPYYPQL-------PGLTHWSYGMGGDWQAENLLETAGGLHFRVRSPLGAFKVSLPMI 285

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F   NAL A      +G+    +   LE    VPGR + V       R+ VD+AHT +
Sbjct: 286 GKFNALNALAAMAAAARLGVKIPELQAGLEFFPGVPGRMQIVQAT--PFRVIVDFAHTES 343

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S+   L+ +R  T GR+++V G  G+R   +R  +G+ A +LAD+A+ T+++ RSE+ E 
Sbjct: 344 SVRAALETLRPTTRGRLVIVVGAAGERGAERRTGIGRAAGELADLAVFTEEDHRSENLEA 403

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I   +          +    +R EAIR AI      D L++AGKGHE        E    
Sbjct: 404 ILQTMAESAKAVGGQYALIPDRREAIRWAIAHAQPGDTLLLAGKGHERTLE-RGSEVLPW 462

Query: 484 VDCDIIREILGL 495
            + +  R+ LGL
Sbjct: 463 NEVEEARKALGL 474


>gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
 gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
          Length = 479

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 222/488 (45%), Gaps = 21/488 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +++  L I  +     +I  +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KNINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++  S                +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 62  SLVLTDSH--------QFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY        + 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQN--LV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 230 NIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E
Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I  G       I   +R +AIR +IE  N+ D++++AGKGHE      NG K+  
Sbjct: 407 NIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 465

Query: 484 VDCDIIRE 491
            + +II+ 
Sbjct: 466 DEREIIKN 473


>gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica
           CNB-440]
 gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinispora tropica CNB-440]
          Length = 514

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 148/503 (29%), Positives = 230/503 (45%), Gaps = 22/503 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +L  +   E             E  +  V+  S+ ++ G ++ A+ G +  G  F+ 
Sbjct: 14  RLGNLAARLAAESGADAVDLRPGPTEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVS 73

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILA 119
            A   GA A++     +     AT   + P+LVV + R  L   AS +YG       ++ 
Sbjct: 74  AAARAGAVAVLTDPDGAA----ATAEVDLPMLVVPDPRAVLGDLASVVYGDPTAGLTVIG 129

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK+S A  V+   + +G ++  IG   T       D+  TTP    L   L+   
Sbjct: 130 VTGTAGKTSTAYLVESGLRAAGHTTGLIGTVETRLGDLVVDSVRTTPEATDLHAMLAAAR 189

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GVT V +E SSH L   R+ G++   G +TN G DH+D+H     YF AK +LF+   
Sbjct: 190 ERGVTAVVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHADSVDYFAAKAKLFDG-- 247

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                  +   +     ++     A     + G         +       Q+ T+     
Sbjct: 248 ----RCEVEVLNHDDPALLPLHRPATVTYSAAGDGAATWWADEAGGEGYAQRFTLHGPDG 303

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG   V NAL+A  + +A G+     +  +     VPGR E V  +    R
Sbjct: 304 LTLPAGVALPGRHNVANALLAVAVLVAAGVAPRTAVAGVADCGGVPGRLELVP-SPGPVR 362

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH ++++   L  +R  ++GR+I + G GGDRD+GKRP+MG  A + AD+ +VTD
Sbjct: 363 GVVDYAHKTDAIVAALAALREFSTGRLICLLGAGGDRDRGKRPLMGVAAAEGADVVLVTD 422

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPR+EDP  IRAE++ G+         +E   R  AI  A+++    DV+ + GKGHE 
Sbjct: 423 DNPRTEDPADIRAEVLAGVRRADTEAQVLEVPGRRAAIAEAVQLAAPGDVVALLGKGHEQ 482

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
              V  G+     D   +   L 
Sbjct: 483 GQEVG-GQVHPFDDRTELAAALR 504


>gi|51246753|ref|YP_066637.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Desulfotalea psychrophila LSv54]
 gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein
           [Desulfotalea psychrophila LSv54]
          Length = 1014

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 145/530 (27%), Positives = 244/530 (46%), Gaps = 44/530 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+     E +   S   +  +   + +V++DSR + +G +F+A  G  +DGH ++  
Sbjct: 15  LEKLLEGL--EWLQLPSRSELDPQTHLVADVTADSRQVASGSLFIARRGGIQDGHAYVED 72

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+ +G   ++V +    Q+  A   +   ++ V +++       +  +    E +  + +
Sbjct: 73  ALLRGCPVVIVEAGSVSQNAYAHCPA--LVIEVADSQAAYGKILANYFANPAEKLSLVGI 130

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF------AQDNRLTTPSPIYLAKAL 174
           TGT+GK++++  ++ +  R G     IG  +                LTTP    + + L
Sbjct: 131 TGTNGKTTISYLLEDMLTRLGHQVGVIGTVNNRFYRADGSQEIIATSLTTPDAKIVQQLL 190

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++  GV  V +E SSH + Q R+  ++     FTNL RDH+DYH   + YF+AK+ LF
Sbjct: 191 RRMADAGVDTVIMEVSSHAISQARIGALRFDLAIFTNLSRDHLDYHLQMEDYFSAKLGLF 250

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK------ 288
              L ++  A+I +D    +    +  +      +            V   H +      
Sbjct: 251 SRYLKEDGIAVIPSDSRQLQTEFLQRLHRQLAGRNRFLSWGEEVGSDVQLHHYRVGLTET 310

Query: 289 -QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              V ++   +  +F   L G F + N L     C A+ I    + E++ +L   PGR E
Sbjct: 311 DCAVRLADCQQMLEFQSGLVGRFNIDNLLAVIAACRALAISGQDIAENIGRLQGAPGRVE 370

Query: 348 FVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            V            ++VDYAHT ++L+ +L  +  +  G +I VFGCGGDRD+GKRP+MG
Sbjct: 371 RVFATETPANAQPVVFVDYAHTPDALDKLLSTLGDVPHGDLIAVFGCGGDRDKGKRPLMG 430

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------------------GFIEKG 443
            +A  LAD+ IV DDNPR+E  E I AEI+ G+                     G +  G
Sbjct: 431 AVAARLADVVIVADDNPRTEASEPILAEIVVGVAEQAMPLRNPDWLFERKANERGCVVVG 490

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R  AI  A+ M   +D++ +AGKGHE   +   G+K    D       L
Sbjct: 491 DRRRAIDLAVHMACSKDIIAIAGKGHEPYQLGATGKK-FFDDRLQAGRAL 539



 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 166/452 (36%), Gaps = 35/452 (7%)

Query: 33   VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
            V++DSR +  G IFVA+ G   DGH ++ Q +A GA  +VV  A              P 
Sbjct: 568  VTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAAGAACLVVEKA--------RPDLTCPQ 619

Query: 93   LVVDNTRKFLSLFAS----RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            ++V +TR+ L   A+       G     ++ +TG+SGK+++      I   S   +    
Sbjct: 620  VLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGKTTIKEMTASIL-ASLWPAGAEY 678

Query: 149  PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
            P + +     +       P+ L       +      + +  +S G +  RL  I +    
Sbjct: 679  PENVVLKTEGNFNNLIGLPLSLLP---LDNMHRAAVLEMGMNSPG-EIARLAEIAQPDIC 734

Query: 208  SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               N+   H+    + +    AK  LF    P +S  ++  DD +  E+ K         
Sbjct: 735  CVANVHAAHLSGLGSIEGVARAKEELFAH-APVDSILVVNLDDPHVVEMAKGYEQKKICY 793

Query: 268  LSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     I    + +         + +  +         GE  V NAL AAG+ +A G
Sbjct: 794  SLSAAGSADIWASDLSSGEAGSIDFNLHLGAESTSVQLDTLGEHNVSNALAAAGIALAAG 853

Query: 327  IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                 +   L        R E + T+     I   Y     S+   L+ + T+   + I 
Sbjct: 854  ASPQQIALGLGSYKTPSKRLERIRTSCNWTIISDCYNANPASMSAGLRTLATVAGEKKIA 913

Query: 387  VFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G+  +     +G +A +L+ D  ++  +         + + +  G    +  
Sbjct: 914  IVGDMLELGEFAEEAHRQIGSLAGELSLDYLLIVGEFASFLQQAALNSGM--GKEQVLVF 971

Query: 443  GNRIEAI------RTAIEMLNKQDVLVVAGKG 468
             +  EAI        A   L ++D++ +  KG
Sbjct: 972  PS-KEAIIDWLQAYQADGGLGEKDIVFI--KG 1000


>gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 487

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 225/491 (45%), Gaps = 21/491 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++  S                +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 62  SLVLTDSH--------EFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY  +     + 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQN--LV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E
Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE      NG K+  
Sbjct: 407 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECYLD-KNGAKEYF 465

Query: 484 VDCDIIREILG 494
            + +II++  G
Sbjct: 466 DEREIIKKYAG 476


>gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
 gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
          Length = 504

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 147/474 (31%), Positives = 221/474 (46%), Gaps = 23/474 (4%)

Query: 36  DSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           DSR I A    +F A  G+  DG  +I +AI  GA+A+V         F      N P L
Sbjct: 27  DSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEKEG----FDWNPEWNVPHL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            V   +   +  A+  Y    + +  +AVTGT+GK+S   ++ Q     G  +  IG   
Sbjct: 83  GVMGLKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAVIGTLG 142

Query: 152 T------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                       ++   TTP  + L + L+ L  + V  V++EASS G+DQ RL+GI + 
Sbjct: 143 VTVFVNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRLNGIPID 202

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNA 263
            G FTN  RDH+DYH    +Y  AK +LF+    K +   +        +  +  R    
Sbjct: 203 VGLFTNFTRDHLDYHHDMASYKAAKRKLFDWPGLKHAVLNLDDPMGRELATALKTRISLT 262

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G  + +       +    +    +  + +I            L G F   N L   G+ +
Sbjct: 263 GYTLENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRTRLIGRFNASNVLGVLGVLL 322

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---T 380
           A GI     +  L  L    GR + +G  +    + +D+AHT +++E  L  +R +    
Sbjct: 323 AAGIHWDDAVRTLGDLLPPAGRMQQMGGKNAPL-VVIDFAHTPDAMEKGLATLRHVANER 381

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-F 439
           +G++  VFGCGGDRDQGKRP MG +  + AD  IVT DNPRSEDP++I  +II G+    
Sbjct: 382 NGKLWCVFGCGGDRDQGKRPQMGSV-SETADFVIVTSDNPRSEDPKEIMKQIISGMEKEP 440

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +R  AI  A+   ++ DV+ +AGKGHET   +  G K    D D +   L
Sbjct: 441 QVYEDRAMAILQAVRQASQNDVIFLAGKGHETYQEIK-GVKLPFADADHVALAL 493


>gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
 gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
          Length = 500

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 168/494 (34%), Positives = 254/494 (51%), Gaps = 18/494 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL   +    +   + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA
Sbjct: 3   KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + +VV     L D      ++   +VV +TRK ++  A+  Y    +++  + +TGT+GK
Sbjct: 63  KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    V+ I + +G  +  IG     I   A+ +  TTP    L +  + +       V
Sbjct: 118 TTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVV 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH LD  R         +F+NL +DH+DYH T +AYF AK RLF +  P +    
Sbjct: 178 AMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVI- 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              DD + KE+++R   A   V++ G+     IH   V        VT+ V G    F +
Sbjct: 237 -CIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDY 295

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYA 363
           PL G+F V N + A G+ + +G  +  ++E LE+   +PGR E     N+ G  ++VDYA
Sbjct: 296 PLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYA 355

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L +I  +T GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+E
Sbjct: 356 HTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRTE 414

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  +I+ G+      F  + +R  AI  AI      D +++AGKGHE   +V +  
Sbjct: 415 DPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQV 474

Query: 480 KKMSVDCDIIREIL 493
                D  +  E L
Sbjct: 475 LS-FDDRIVAAEEL 487


>gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phymatum STM815]
 gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum
           STM815]
          Length = 512

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 152/476 (31%), Positives = 220/476 (46%), Gaps = 31/476 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            + +DSR I  G +F+A      DG     FI  AI +GA A++V +     D    +  
Sbjct: 30  HLHADSRKIAPGDVFLAY---AVDGADNRPFIASAIERGAAAVLVQADGFAGDIDPALM- 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               + V    +     AS  YG       ++ VTGT+GK+S  +++       G     
Sbjct: 86  ----VAVPRLNELTGTIASAWYGDPSDAMRVIGVTGTNGKTSCTNWISAALTALGQPCAI 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   + +         TTP    L ++L  L + G   V++E SSH L Q R++G    
Sbjct: 142 IGTLGSGMPGQLVHTGFTTPDAPQLQRSLEQLRAAGAKAVAMEVSSHALHQGRVNGTAFS 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------R 259
            G FTNL +DH+DYH T  AY  AK RLF    P+   A+I ADD   + ++       +
Sbjct: 202 VGVFTNLTQDHLDYHGTFAAYEAAKARLFSW--PELKAAVINADDEAGRRMIASTNGHAK 259

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 +  +       I    V A        I+ +  + D      G F V N L   
Sbjct: 260 TIAYSLQPRADVQADASIVASNVRATTTGTAFHIASDWGNSDIEVNTLGAFNVSNLLGVL 319

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     +  + KL  V GR E +G   +       +DYAHT ++LE  L  +R
Sbjct: 320 GALLASDVPFDAAVAQIAKLESVNGRMERLGGRVQNDEPLVVIDYAHTPDALEQTLTALR 379

Query: 378 TI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I     G++I +FGCGGDRD  KRP+MG+IA   AD  +VT DNPRSEDP KI  +I  
Sbjct: 380 PIADARGGKLICMFGCGGDRDATKRPLMGEIAERCADGVVVTSDNPRSEDPHKIIDQIAA 439

Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           G+          +R  AI  A+    ++DV+V+AGKGHE+   +  G+K+   D D
Sbjct: 440 GMKDASKARRIEDRASAILQAVRCAAREDVVVLAGKGHESTQEIM-GKKRAFSDQD 494


>gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
 gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
          Length = 505

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 131/509 (25%), Positives = 228/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL D++ K   +LI  +          +I+ V+  S+ +   ++F A+ G + DGH FI 
Sbjct: 4   KLNDVLLKLDQDLIKYVK----GSLNLEISGVTYSSKLVLPRFVFFALPGIRFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  IV S              N   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  MAIQKGSNVIVCSRDLDF------YSPNVTYIKVDDFSIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    +        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKRGIKVGFVSTVFFDDGSGSLIKNPYRQSTPESTEIHAF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +   GV +  +E++SHGLD    RL  +   A  FTN+G DH+++H T + Y N K+
Sbjct: 174 LSNMVKNGVQYAVLESTSHGLDFETARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF+ +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFQSVSDDAGFGVINLDDVYSSDFKNAIKKSFTYSLKNSQADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A   +   + ID   +++ L  +  + GR +   
Sbjct: 292 EFYYKGIKYFANVNLLGSFNVENVMAALILVSKLLNIDIQDIVDELVCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +     R+I VFG  G+RD  KR + G+I+   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFAINRLISVFGSAGERDVAKRFLQGQISDIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++ D++PR E+   I  +I  GI   +         +R +AI  AI +    D++V 
Sbjct: 411 DLILLCDEDPRGENSMCIIKDIAKGIVNKVVNRDLFFIPDRRQAIEKAISLARAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N  +    + ++++  +
Sbjct: 471 LGKGHESSIIYKN-REMFWNEQEVVKNAI 498


>gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
 gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
          Length = 500

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 169/494 (34%), Positives = 255/494 (51%), Gaps = 18/494 (3%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL   +    +   + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA
Sbjct: 3   KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
           + +VV     L D      ++   +VV +TRK ++  A+  Y    +++  + +TGT+GK
Sbjct: 63  KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    V+ I + +G  +  IG     I   A+ +  TTP    L + L+ +       V
Sbjct: 118 TTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLLARMRDARCDVV 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH LD  R         +F+NL +DH+DYH T +AYF AK RLF +  P +    
Sbjct: 178 AMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVI- 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              DD + KE+++R   A   V++ G+     IH   V        VT+ V G    F +
Sbjct: 237 -CIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDY 295

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYA 363
           PL G+F V N + A G+ + +G  +  ++E LE+   +PGR E     N+ G  ++VDYA
Sbjct: 296 PLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYA 355

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT ++LE  L +I  +T GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+E
Sbjct: 356 HTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRTE 414

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  +I+ G+      F  + +R  AI  AI      D +++AGKGHE   +V +  
Sbjct: 415 DPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQV 474

Query: 480 KKMSVDCDIIREIL 493
                D  +  E L
Sbjct: 475 LS-FDDRIVAAEEL 487


>gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 689

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 149/488 (30%), Positives = 229/488 (46%), Gaps = 17/488 (3%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
             +   +R ++  +  ++   AG++F A+ G++  G  +  QA A GA  ++   A    
Sbjct: 33  LELHGDDRDVSGATLRAQDAGAGYLFAALPGDRTHGANYAAQARAAGAAGVLTDPAGLAL 92

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
                  ++  +LV    R+ L   ++R+YG     +  + +TGTSGK++ A   +   +
Sbjct: 93  IREDPEAADVTVLVHARPREVLGAVSARIYGDPSSRLTLIGITGTSGKTTTAYLAEAALR 152

Query: 139 RSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +G     +G            + LTTP    L +  + ++ +GV  V +E SSH L   
Sbjct: 153 AAGRVVGLVGTVEIRVDGTVVPSSLTTPEAPDLQRMFAVMAERGVDTVVMEVSSHALALG 212

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS---- 253
           R+DG     G FTNL +DH+DYH+T   YF AK RLFE   P  +       D       
Sbjct: 213 RVDGCHFAVGGFTNLSQDHLDYHRTMDEYFAAKARLFEAGSPTRARQAAVCVDDVWGRRA 272

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            +V  +       V + G     +         ++  +    +G + +   PLPG + V 
Sbjct: 273 ADVAAQGAATPITVSTTGPADWSVVRTVRTDAGSQTVLIAGPDGAETEMTVPLPGAYNVA 332

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL+A  + +A G D    +  L  + V PGR E V          VDYAH   ++E +L
Sbjct: 333 NALLAVAMTVAAGTDVDTAVAGLAHVAV-PGRLEKVERGQE-FLAVVDYAHKPAAVEAVL 390

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +   T GR+ VV G GGDRD  KRP+MG  A   AD+ IVTDDNPRSE P  IRA ++
Sbjct: 391 ATLGAQTRGRLAVVLGAGGDRDTEKRPLMGAAAARGADLVIVTDDNPRSEPPADIRAAVL 450

Query: 434 HGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            G            E G+R +AI  A++     DV+++AGKGHE    + +G K    D 
Sbjct: 451 AGARSVDAARGEIREIGDRRDAIAAAVDWARPGDVVLIAGKGHEKGQEI-DGVKHPFDDR 509

Query: 487 DIIREILG 494
            ++ E+L 
Sbjct: 510 QVLGELLS 517


>gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida
           GA99-3549]
          Length = 479

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 223/488 (45%), Gaps = 21/488 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I+ +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++  S                +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 62  SLVLTDSH--------QFEDQKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY        + 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYYKKYQN--LV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 230 NIDDEYGQRLCNMTQAPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E
Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I  G       I   +R +AIR +IE  N+ D++++AGKGHE      NG K+  
Sbjct: 407 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 465

Query: 484 VDCDIIRE 491
            + +II+ 
Sbjct: 466 DEREIIKN 473


>gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
 gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
          Length = 500

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 164/495 (33%), Positives = 247/495 (49%), Gaps = 20/495 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   EL   +    +   + ++N ++  S  +Q G  F  +VG   DGH F   AI +GA
Sbjct: 3   KTCTELFAGIDCTILGNADDEVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           + +VV     L D      ++   +VV +TRK ++  A+  Y  HP   +A+ G +G + 
Sbjct: 63  KVLVVERKVYLAD-----ATDVTEIVVKDTRKAMAAAAANFYD-HPSKDIALVGITGTNG 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTH 184
             +    +   + ++  + G   T+     D       TTP    L +  + +       
Sbjct: 117 KTTTTYLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDV 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH LD  R         +F+NL +DH+DYH T +AYF AK RLF +  P +   
Sbjct: 177 VAMEVSSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVI 236

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
               DD + KE+++R   A   V++ G+     IH   V        VT+ V G    F 
Sbjct: 237 --CIDDKWGKELLRRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFD 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDY 362
           +PL G+F V N + A G+ + +G  +  ++E LE+   +PGR E     N+ G  ++VDY
Sbjct: 295 YPLVGKFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDY 354

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT ++LE  L +I  +T GR + VFGCGGDRD  KRPIMGK AL  AD A+VT DNPR+
Sbjct: 355 AHTPDALEKALASIMALTPGRTVCVFGCGGDRDASKRPIMGKAALA-ADHAVVTSDNPRT 413

Query: 423 EDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           EDP+ I  +I+ G+      F  + +R  AI  AI      D +++AGKGHE   +V + 
Sbjct: 414 EDPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKGHEDYQLVGDQ 473

Query: 479 EKKMSVDCDIIREIL 493
                 D  +  E L
Sbjct: 474 VLS-FDDRIVAAEEL 487


>gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
          Length = 492

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 225/491 (45%), Gaps = 21/491 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++  S                +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 67  SLVLTDSH--------EFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY  +     + 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQN--LV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 235 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 295 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 351

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E
Sbjct: 352 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 411

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE      NG K+  
Sbjct: 412 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECYLD-KNGAKEYF 470

Query: 484 VDCDIIREILG 494
            + +II++  G
Sbjct: 471 DEREIIKKYAG 481


>gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
 gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
          Length = 485

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 150/502 (29%), Positives = 228/502 (45%), Gaps = 33/502 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ LI      L            + ++N +   SR+++ G IFVAI G K DGH FI
Sbjct: 1   MKLKTLISDITNSL--------EYASDIEVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +AI+ GA A+V  + Y             P + V + R+ L   A  LY    +  N++
Sbjct: 53  NEAISNGAVAVVGEAEYDCLP--------VPYIKVQDARQALGNLAKTLYCDPSKMHNMI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL-TTPSPIYLAKALSYL 177
            +TGT+GK++ A  V+ I Q +  S       S   +  +     TTP  + L K L   
Sbjct: 105 GITGTNGKTTTAYMVKHIFQTASESCSLFSTVSNFVNGTELMSTATTPDILELNKMLR-- 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +V +E SSHGL Q R++GI+   G FTNL  DH+DYHQ  + YFN K  LF+  
Sbjct: 163 -MSMDKNVVMEVSSHGLHQKRVEGIEFNYGIFTNLTHDHLDYHQNMEEYFNTKAGLFKL- 220

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L K   AII +   + ++++ +  N    VLS G   +   L+ +       ++ I    
Sbjct: 221 LKKNGEAIINSGCPWGRKLINQLKNKRQSVLSFGT-SENDDLQLLSTKDGVSKIRIQGSN 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +   P+PG   + NAL A       G++   +   +E    VPGRFE   + S    
Sbjct: 280 VKLEIKMPMPGNHNLQNALAAILCAYRAGVNVNDIKRAVESFPGVPGRFEEYYSQSVNF- 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             +DYAHT + LE +L+ ++ +   RI+ VFG  G++D  KR  M  I+    D  I+T 
Sbjct: 339 -ILDYAHTPDGLENLLETVKKLNGNRIVHVFGFRGNKDMTKRLAMLDISAKYCDKIILTL 397

Query: 418 DNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           D+      EK+  ++       G        +R  AI  A +   K D +V+ GKG E  
Sbjct: 398 DDLNGVALEKMILDLKKSVNYIGTNNIHLIIDRTRAIEYAWKNSIKGDRIVITGKGPELY 457

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
                 E     D + I+ +  
Sbjct: 458 E--REFELPADSDAETIKYLFS 477


>gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
 gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
          Length = 528

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 148/495 (29%), Positives = 226/495 (45%), Gaps = 21/495 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L    +       +  I  VS DS     G +FV + G    G  F   A+A GA A++ 
Sbjct: 31  LAPASAEDAAALNDLSILGVSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVAVLT 90

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVAS 131
            +  +           TP+LV  + R  +   ++ +Y      ++  AVTGT+GK++ A 
Sbjct: 91  DADGAQ--IVHQTAPGTPVLVHSDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAY 148

Query: 132 FVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           F+  I           G     +   + ++  TT     L + ++      V   S+EAS
Sbjct: 149 FLDAILSAHVGGCMVAGTVELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEAS 208

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH +  HRLDGI +    FTNL RDH+D+H+T + Y  AK +LF     +        DD
Sbjct: 209 SHAIVLHRLDGIVVDVAGFTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARRGVV--CVDD 266

Query: 251 AYSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306
            +   +   A     R            ++    V    +    T+     +  +   PL
Sbjct: 267 QWGAALAAEAPIEIDRVRAYPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPL 326

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHT 365
           PG   V NA +A  + I  G+ +A     L   H +PGR + +           VD+AHT
Sbjct: 327 PGLVNVQNAALALVMAIRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVDFAHT 386

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++E+ LK +R IT GR+IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP
Sbjct: 387 PDAMELALKAVRPITPGRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDP 446

Query: 426 EKIRAEIIHGI-------PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + IR  I+ G+           E    R +A+R  +E+    D ++V GKGHE    +  
Sbjct: 447 QLIRNAILEGVRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMA- 505

Query: 478 GEKKMSVDCDIIREI 492
           GE     D  ++ E 
Sbjct: 506 GEFIRYNDAPVMAEA 520


>gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
          Length = 522

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 141/499 (28%), Positives = 227/499 (45%), Gaps = 22/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL ++L +      +  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 17  LGELADRLGVETAGSGD--VTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAVA 74

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++     + +       +  P+LV +N R  +   A+ +YG+       + +TGTSGK++
Sbjct: 75  VLTDPTGAER----AAATGLPVLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTT 130

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G  +  IG            +  TTP    L    + +  +GV  V++
Sbjct: 131 TAYLVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF             
Sbjct: 191 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGVVNF- 249

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD Y + ++  +        + G+     H + V         T +  +G+      PL
Sbjct: 250 -DDEYGRRLITESGVPVTTFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 308

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       G+   +  + +  +  VPGR E V          VDYAH +
Sbjct: 309 PGPFNVANTLAAIVTLAVAGVAPQIAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKT 367

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+++R +T G++ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 368 DAVESVLRSLRKVTEGKVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 427

Query: 427 KIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I A ++ G       E+G+         AI  A+      D ++VAGKGHE    V +G
Sbjct: 428 AILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDV-HG 486

Query: 479 EKKMSVDCDIIREILGLIL 497
             +   D  ++   +   L
Sbjct: 487 VVRAFDDRKVLHAAIERSL 505


>gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 494

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 131/477 (27%), Positives = 219/477 (45%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R + ++++DSR  ++G IFVA  G   D H F    I QG + IVV S   ++      
Sbjct: 20  DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVEG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V  T +  SL A  L+           VTGT+GK+S+A+ +  I ++   +S
Sbjct: 75  --DVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DDA+S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSEYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                                +          +     +++   P  G+F + N + A  
Sbjct: 253 PYEIFTYGIDN--DAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMI 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + GI    ++E ++ L  V GR E +  N     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNL-PIDLIIDYAHTADGMNKLIDAVKPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + +E+  G     
Sbjct: 370 KRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLTSELAKGATHDN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           ++E  +R E IR AIE+    D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YVEFEDRAEGIRHAIEVAEPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|124023806|ref|YP_001018113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964092|gb|ABM78848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 538

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 139/477 (29%), Positives = 218/477 (45%), Gaps = 19/477 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR +  G +F+ + G + DG  F  QA+A    A       +          +  +
Sbjct: 59  VSCDSRAVARGCLFLGLPGEQVDGGSFWRQALAA--GAEAAVIGPAAAALRPPGPKDAVV 116

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +V +    ++   A+  + +    +  + VTGT+GK++    ++ +    G S+   G  
Sbjct: 117 VVSEPVAAWVGQLAAAFWQQPSSRLALIGVTGTNGKTTTTHLIEHLSVAVGRSTALFGTL 176

Query: 151 -STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +   +++     TT     L   L+     G    ++E SSH L+Q R+ G +     F
Sbjct: 177 VNRWPNYSVPATHTTAFADRLQAQLAQAVEAGAELGAMEVSSHALEQQRVAGCRFAGAVF 236

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELL--PKESPAIIYADDAYSKEVMKR----AHNA 263
           TNL +DH+DYH + +AYF AK +LF   L     + A++  D  +   + +R       +
Sbjct: 237 TNLTQDHLDYHSSMEAYFEAKAQLFAPPLLESGSAKAVVNIDGPWGARLAQRLGDTCWRS 296

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                 +      + + ++       Q  +     +  F  PL G F + N L A G+ +
Sbjct: 297 SLAEGVLQRADAELTMTELTMSSAGVQGRLISPCGEGWFDSPLLGRFNLMNLLQAVGVLL 356

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTI 379
             G+   L+L+ +     VPGR E V   +        + VDYAHT + LE  L   R  
Sbjct: 357 QQGLPLPLLLKAIADFRGVPGRMERVLIPAADASQVPTVLVDYAHTPDGLENALTASRPF 416

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
           TS  +  VFGCGGDRD+GKR  M  IA  LAD  +VT DNPR+EDP++I  +++ GIP  
Sbjct: 417 TSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSDNPRTEDPQQILVDVVAGIPQG 476

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                + +R  AI  AI      DV++VAGKGHE   I+    K    D +     L
Sbjct: 477 TALTVEVDRAVAIALAIAEAGPGDVVLVAGKGHEDYQILGTS-KVHFDDREEAERAL 532


>gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi N40]
          Length = 508

 Score =  267 bits (683), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 135/509 (26%), Positives = 227/509 (44%), Gaps = 31/509 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I  V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  IV S             S+   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQRGSNVIVCSRDLDF------YSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           LS +      +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LSTMVKNEAQYAILESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRSVSDDAGFGVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I  ID   +++ L  +  + GR +   
Sbjct: 292 EFYHKGVKYLANVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            GKGHE+  I  N E     + ++++  +
Sbjct: 471 LGKGHESSIIYKNREV-FWNEQEVVKNAI 498


>gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
 gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
          Length = 496

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 124/512 (24%), Positives = 228/512 (44%), Gaps = 36/512 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +       ++I+          +   +++  +++++    +FV I G   D H  I
Sbjct: 1   MKLIENTDGLDIDIISG-------KFDDDFSDLVFNTKNVVKDCLFVCIKGRNFDTHDVI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            + +  GA+A+VV             R +  ++ VD+TR  L+  ++  +G   + +  +
Sbjct: 54  DEIVKLGAKAVVVERNIK--------RDDICVIKVDSTRAALARLSAAYFGHPAKKMKII 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TGT GK++ +  ++++ +++           T+    +    TTP    L K      
Sbjct: 106 GITGTKGKTTSSYMLKKLLEQNAKVGLIGTNGITVGDIHRSTLNTTPESYELQKTFKECL 165

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  +V +E SS  +   R++GIK   G FTN+  DHI     +   F   +       
Sbjct: 166 DAGCEYVVMEVSSQAVMLKRIEGIKFYIGIFTNISPDHIG--PDEHKDFTEYLMYKSLFF 223

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +    ++ ADD +S  +++++ +               ++  +               K
Sbjct: 224 KQCEKTVVNADDEHSAYILEQSTSDEKYEFGKCGDFVINNINYISKKDFLGTSFCISCSK 283

Query: 299 DFDFLFP----------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +    +           +PGEF VYNAL A    I   +  A++   L+ + V  GR E 
Sbjct: 284 NVKDKYRVSEVGDILVGIPGEFNVYNALSALSAAIICRVKPAVLQTALKDIKV-NGRMEV 342

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              +S   +I +DYAH + S E ++K +R     R++VVFG GG+R + +R  MG+I   
Sbjct: 343 A-YSSHDIKIIIDYAHNAISTESLIKTLRRYEPKRLVVVFGSGGNRSKDRRYSMGEICGK 401

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +AD ++VT DN R E  E I A+I+  +      +I   +R EAI  A+E     D++ +
Sbjct: 402 MADFSVVTADNSRYEKTEDIIADIVEKLSETGGKYITVPDRKEAIFYAMENSKPGDIIAI 461

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            GKGHE    + +G +   +D +++ E L  +
Sbjct: 462 IGKGHEDYQEI-DGVRHHFLDREVVEECLEKM 492


>gi|302528474|ref|ZP_07280816.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
 gi|302437369|gb|EFL09185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
          Length = 519

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 146/506 (28%), Positives = 223/506 (44%), Gaps = 24/506 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+ +    LI        +  +  +   +  ++H+  G +F  + G +  G  F  Q
Sbjct: 23  LATLLARAGARLIAD----RPEAADLTVTGTTLRAQHVLPGDLFAGLPGARAHGADFSDQ 78

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A+A GA A++   + +  D  A   +  P+LV  + R  L   A+ +YG+   +  +L V
Sbjct: 79  ALAAGAAAVLTDPSGA--DRPALRDAPVPVLVHPDPRAALGEIAAWIYGEPSLHLSVLGV 136

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++ +  V    + +G ++  IG   T  +     +  TTP    L   L+ +  
Sbjct: 137 TGTSGKTTTSYLVDSGLRAAGRTTGLIGTVETRIAGERLASGFTTPEAPDLQALLAVMLE 196

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV +E SSH L   R++G +   G+FTNL +DH+D+H+  + YF AK  LF+    
Sbjct: 197 RGVTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMEEYFAAKSLLFDGRST 256

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            E   +       +              +  G    +           +Q  T+      
Sbjct: 257 TEVVVV-----DSAWGQALLTPQTVTVSIEAGADALWRAADIEATPAGEQTFTLLGPDGL 311

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                            V A   +A     A  +        VPGR E V    +     
Sbjct: 312 SRAAKIPLPGTFNVANAVLAAAILASAGIDADDIVAGLAAVEVPGRMERV-YLGQEFTAV 370

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   ++   L  +R  T GRII V GCGGDRD  KRP+MG+ A+  +D+ IVTDDN
Sbjct: 371 VDYAHKPAAVAQGLDALRARTEGRIITVLGCGGDRDTAKRPMMGEAAVRRSDLLIVTDDN 430

Query: 420 PRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           PRSEDP  IRA ++ G            +E  +R EAI  A+ +    D++++AGKGHET
Sbjct: 431 PRSEDPAAIRAAMLAGARAVGPAAGGEVLEIADRREAIAHAVSLAGPGDIVLIAGKGHET 490

Query: 472 VHIVTNGEKKMSVDCDIIREILGLIL 497
                 G      D D +   +   L
Sbjct: 491 GQE-AQGVVHPFSDRDELEAAIRKRL 515


>gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 494

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPCEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
 gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
          Length = 505

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 162/486 (33%), Positives = 238/486 (48%), Gaps = 30/486 (6%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
                P +   +++ +++ DSR +  G +FVA+ G +  G      A  QGA AI+   A
Sbjct: 20  GAPALPSEVAGQRVTDLAQDSRRVTPGAVFVALRGTQGHGLAHARAAAEQGAVAILWDEA 79

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQ 134
            +    S       P+L +   R  L      L+G  P +   +AVTGT GK+SV+    
Sbjct: 80  EAAPALS------IPVLHLPGLRVALPAICDALWGAWPADYPVVAVTGTDGKTSVSQLFA 133

Query: 135 QICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              ++ G+ +  +G   T      +D   TTP  I L + L++L++ G   +S+EASSHG
Sbjct: 134 GALEQLGVPTGVVGTLGTGRFGALEDCGHTTPGVIDLHRHLAHLTADGCRALSIEASSHG 193

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L+Q R+ G+ +     T LG DH+D+H +QQAY +AK RLF    P    A++ ADDA  
Sbjct: 194 LEQGRMAGLPVRVAVLTRLGSDHLDFHGSQQAYADAKARLFAW--PGLETAVLNADDALG 251

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           + +++          S       +  ++V A  +  + T+ V G+ +     L G FQV 
Sbjct: 252 QRLIRETTAEHILTYSAVGASADLVAREVEAGSDGIRFTLEVAGEAWPVQAALFGLFQVG 311

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L       A+G      ++ + +L  VPGR E       G  + VDYAHT  +L   L
Sbjct: 312 NLLATLAALRALGHSWPAAVDAVSRLRGVPGRMERF-ELPSGALLVVDYAHTEQALAAAL 370

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +R  T+GR+I VFGCGGDRD  KRP MG+ A   AD  IVTDDNPRSEDP  IRA ++
Sbjct: 371 DALRPHTAGRLIAVFGCGGDRDVTKRPAMGRAASARADQVIVTDDNPRSEDPAAIRAAVL 430

Query: 434 HGIPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            G        +R EA R            +      DV+++AGKGHET   V   +    
Sbjct: 431 AGC-------DRPEACRELGDREAAVRAAVAEAGPGDVILLAGKGHETTQQVGT-QFYPF 482

Query: 484 VDCDII 489
            D ++ 
Sbjct: 483 SDRELA 488


>gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 479

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 223/488 (45%), Gaps = 21/488 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++  S                +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 62  SLVLTDSH--------EFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY  +     + 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQN--LV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E
Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE      NG K+  
Sbjct: 407 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECYLD-KNGAKEYF 465

Query: 484 VDCDIIRE 491
            + +II+ 
Sbjct: 466 DEREIIKN 473


>gi|227504688|ref|ZP_03934737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198698|gb|EEI78746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 521

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 167/503 (33%), Positives = 248/503 (49%), Gaps = 28/503 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L        +      ++  S DS+ I AG +F A+ G +  G  F        A 
Sbjct: 4   DLQTLATIGGGRVIGDDSVTVSACSLDSKAIAAGGLFAALPGTRVHGAQFAGDTE---AA 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           AI+   A       A  R   PI+VV++ R  L L A+ +Y    E+  +L VTGTSGK+
Sbjct: 61  AILTDEAGLQHLQEAGERR--PIIVVEDIRAVLGLIAAEIYEHPTEHLTVLGVTGTSGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  ++     +G     IG T T  +      +LTTP    L +  + +  +GVTHV 
Sbjct: 119 TTSYLLEAGLLHAGHKVGLIGTTGTRINREPVPTKLTTPEAPTLQELFARMRHEGVTHVV 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L+  R+ G +   G FTNL +DH+D+H T + YF AK  LF+      S A+I
Sbjct: 179 MEVSSHALELGRVRGTQFDVGGFTNLSQDHLDFHPTMEDYFAAKAALFDG-AQAASAAVI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-------KQQVTISVEGKD 299
             DD + K + ++       ++S   +    + K+V +           Q V +S  G+ 
Sbjct: 238 CVDDDWGKRMAQQVAGKPLTLVSTTDEETAENTKQVISARQLGTEPTGAQHVELSFSGET 297

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + F  P+PG+F + NA +AAG+  A+G+D+   L  +E++ V PGR E   +  +     
Sbjct: 298 YSFELPMPGKFNIANAALAAGMAAAVGVDTETFLNGVERVAV-PGRME-SISRGQDFVAV 355

Query: 360 VDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           VDYAH   ++  +L  +R     T GR+ VV G GGDRD  KRP+MG  A + AD+ +VT
Sbjct: 356 VDYAHKPAAIAAVLDTLRGQLSETGGRLGVVVGAGGDRDSSKRPLMGAAAAERADLVVVT 415

Query: 417 DDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DDNPRSEDP  IRA ++ G           E G+R  AI   +E     D ++V GKGHE
Sbjct: 416 DDNPRSEDPAAIRAAVMAGAQKASQTADIREIGSRAAAIDAVVEWAQPGDAIIVVGKGHE 475

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
              IV + E     D + +   L
Sbjct: 476 VGQIVGD-ETLHFDDREEVARAL 497


>gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 614

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 226/507 (44%), Gaps = 22/507 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++L   +F ++         +  + +++ ++ DSR +  G +FV + G   DGH F   
Sbjct: 90  LRELF--EFGDVAVNEWTHLGEDEDVEVSGIADDSRVVLPGDVFVCVPGATFDGHDFALD 147

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
                      + A   +     +    P +VV +  K L   A+  YG   +    + V
Sbjct: 148 ------AVAAGAVAVVCEGEIEGLTDEIPQVVVSSCAKALGKIAAAFYGSPSQQLTTVGV 201

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++    +Q I   + +S   +G     I     +   TTP  +   + L+ +  
Sbjct: 202 TGTNGKTTTTHLIQAILAANDVSCGVVGTVGYEIGDGKYEVPNTTPDALQTQQILAGMID 261

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G    ++E SSH L+  R+D        FTNL RDH+D+H + + Y  AK +LF +L  
Sbjct: 262 AGAGACAMEVSSHALELGRVDECDFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTD 321

Query: 240 K-ESPAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                A        +   ++      R                 + +  V     +  +T
Sbjct: 322 PARQRAKDRDTFDNAAYFIEAAGGGDRVPIITYATQPSKEGQADVFVSDVKLALFETTLT 381

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I     +F+ +  + G+  V N   A  + +A+ I   ++   +E++  VPGR E +   
Sbjct: 382 IQTPVGEFEAVCGVVGKINVTNIAAAVAVGVALEIPLDVIAAGVEEMTPVPGRMELI-DE 440

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VDYAHT ++L+  + ++R      +I VFGCGGDRD  KR  MG+IA   +DI
Sbjct: 441 GQPFSVIVDYAHTPDALKRAITSLRAANVRNVITVFGCGGDRDASKRKEMGEIADTYSDI 500

Query: 413 AIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             VT+DNPR+EDP KI  + +    +       +R  AIR AI M  + D +++ GKGHE
Sbjct: 501 VFVTNDNPRTEDPYKILDDTMQLQNMCRRYVIVDRWYAIRGAIAMAGEDDAVLICGKGHE 560

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
              IV  G K    D    R+ L  ++
Sbjct: 561 DY-IVVGGNKHWFDDRVEARDALRKVV 586


>gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1]
 gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseiflexus sp. RS-1]
          Length = 509

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 142/506 (28%), Positives = 228/506 (45%), Gaps = 38/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +++      L     + P+     +I  V  DSR +  G +FVA  G   DGH +I
Sbjct: 1   MRLHEILK----HLCEPAHMPPV---NPEIAGVVYDSRAVTPGALFVAYRGFHTDGHAYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
           PQA+ +GA A+V        D +   R   P L V N R  L+  A+  YG     +  +
Sbjct: 54  PQALERGAAAVVYE------DPAWDGRVPVPALRVPNARVALAPLAAAFYGHPGRRMRIV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALS 175
            VTGT GK++         +  G  +  +G          +  D+R +TP    +   L 
Sbjct: 108 GVTGTDGKTTTTFLTSVALEAGGAITGLMGTVDFKIGERMWTNDSRQSTPEAPEVQALLR 167

Query: 176 YLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN----- 228
            ++  G ++  +EA+SH L    +RL G       FTN+ ++H+D+H T + Y       
Sbjct: 168 DMAEAGCSYAVIEATSHALSARWNRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARL 227

Query: 229 ----AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
               A+         +   A++ ADD + +  +  A  +  R+    +    +  + V +
Sbjct: 228 FEMLAEFNDAAAPFKQRKIAVVNADDPHHRMFLDAAPVSAERLTYAVHAHADVRAEDVRS 287

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +  +  ++      D    L G+F V+NAL A  +  A G+     L  LE++  V G
Sbjct: 288 TRDGLRFRVTTPWGAADARLRLTGDFNVWNALAALTVACAEGVPLERCLAALERVPGVRG 347

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +    +   + VDYAHT  + E + + +R +T G++I VFG  G+RD+ KRP+ G+
Sbjct: 348 RMERI-EAGQPFTVLVDYAHTPGAFEKLFRIVRPLTEGQVIAVFGSAGERDRAKRPLQGE 406

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--------IEKGNRIEAIRTAIEML 456
           IA    D+ IVTD++PR ED   I AEI  G            +   +R  AIRTA    
Sbjct: 407 IAGRFCDLVIVTDEDPRLEDRAAIIAEIAAGAEAVGKRIGETCLCIPDRALAIRTAFAYA 466

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKM 482
              D++++ GKGHE   I        
Sbjct: 467 RPGDIVLLLGKGHEGSIIYGTTPVPW 492


>gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444078|gb|EDP21082.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
          Length = 492

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 136/502 (27%), Positives = 215/502 (42%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L+             +I ++  DSR    G +FV IVG + D H F 
Sbjct: 1   MKLEQLMEGVPFTLVQGSLGT-------EIADIIYDSRKAAPGLLFVCIVGTQRDSHTFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
               A+G  A+V+     L            ++ V+++R  ++L ++ L+G     +  +
Sbjct: 54  ADCAAKGVSALVIQHDIDLSTLP-----GVTVVKVESSRYAMALMSANLFGNPARQMTMI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ + + +G     IG           D   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SS GL   R+ G+    G FTNL  DHI   + +        +     
Sbjct: 169 LDAGCDTALMEVSSQGLMMDRVAGVHYDVGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFK 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                      DD  +  +++                      K+   H+   V   V G
Sbjct: 229 RCDVGVVN--IDDENTAALLEGHTCKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTG 286

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K + D    +PGEF VYNAL A  +   +G+     +       VV GR E V  +    
Sbjct: 287 KDEMDVKVNMPGEFSVYNALAALAVGKVLGL-PDAAIHDGLGKCVVKGRVELVPISK-KF 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+I   +AD +I+T
Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYKPHRLVVVFGCGGNRSKLRRYGMGEICAKMADFSILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V GKGHE
Sbjct: 405 EDNNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G K   ++ +++ E 
Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485


>gi|294828010|ref|NP_712228.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
 gi|302393763|sp|Q8F4J4|MURE_LEPIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|293385856|gb|AAN49246.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 504

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 159/511 (31%), Positives = 250/511 (48%), Gaps = 24/511 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIF-VA--IVGNKEDGH 57
           MKL  L+ K FPE+  +           +I  + SDSR      IF VA  I G+K+   
Sbjct: 1   MKLTSLLLK-FPEIKLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIFCVADSI-GSKKK-- 56

Query: 58  LFIPQAIAQGAEAIVVSSAYSL-QDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115
            FI  A    A  I++ +  ++  D    + S+   L  + +  +     AS L G   +
Sbjct: 57  EFISNA---KASLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSK 113

Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
           +  I+AVTGT+GK+S+ + +  + +  G++   IG           D   TTP    L  
Sbjct: 114 DLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNL 173

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +  +G+T V +EASSHGL   R++GI + AG FTNL +DH+D+H   + YF +K R
Sbjct: 174 ILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFR 233

Query: 233 LFEE-LLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           LFE     K + A++        ++  +         + ++    +   +  +       
Sbjct: 234 LFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGT 293

Query: 290 QVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              + +   ++      L G F V N  +A    I IG+D   +   LEK+  +PGRF+ 
Sbjct: 294 SYVLGLPGNQERKISTNLLGSFNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQI 353

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +  R     VDYAHT ++LE I++++R      +I +FGCGGDRD+ KRP M +IA +
Sbjct: 354 IYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLITLFGCGGDRDRTKRPKMARIAEE 413

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+D  I+T DNPR+E PE I  EI  G        + + +R +AI   I  L +   L+V
Sbjct: 414 LSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLV 473

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           AGKGHE   I+   EK+   D + +++  GL
Sbjct: 474 AGKGHEEYQIIG-KEKRHFSDVEEVQKAFGL 503


>gi|45657730|ref|YP_001816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|59798331|sp|Q72R81|MURE_LEPIC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|45600970|gb|AAS70453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 506

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 159/511 (31%), Positives = 250/511 (48%), Gaps = 24/511 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIF-VA--IVGNKEDGH 57
           MKL  L+ K FPE+  +           +I  + SDSR      IF VA  I G+K+   
Sbjct: 3   MKLTSLLLK-FPEIKLKSFPSGKNPDSIEIEYIQSDSRKTNKNDIFCVADSI-GSKKK-- 58

Query: 58  LFIPQAIAQGAEAIVVSSAYSL-QDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPE 115
            FI  A    A  I++ +  ++  D    + S+   L  + +  +     AS L G   +
Sbjct: 59  EFISNA---KASLILLRTDSNVLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSK 115

Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
           +  I+AVTGT+GK+S+ + +  + +  G++   IG           D   TTP    L  
Sbjct: 116 DLDIVAVTGTNGKTSLTNILFSLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNL 175

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +  +G+T V +EASSHGL   R++GI + AG FTNL +DH+D+H   + YF +K R
Sbjct: 176 ILKEMKEEGITTVFMEASSHGLKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFR 235

Query: 233 LFEE-LLPKESPAIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           LFE     K + A++        ++  +         + ++    +   +  +       
Sbjct: 236 LFEILDFSKSTFAVLDYSAPNGSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGT 295

Query: 290 QVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              + +   ++      L G F V N  +A    I IG+D   +   LEK+  +PGRF+ 
Sbjct: 296 SYVLGLPGNQERKISTNLLGSFNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQI 355

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +  R     VDYAHT ++LE I++++R      +I +FGCGGDRD+ KRP M +IA +
Sbjct: 356 IYSKDRSRMAVVDYAHTPDALENIIRSVRDSQPKCLITLFGCGGDRDRTKRPKMARIAEE 415

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L+D  I+T DNPR+E PE I  EI  G        + + +R +AI   I  L +   L+V
Sbjct: 416 LSDQVILTSDNPRTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLV 475

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           AGKGHE   I+   EK+   D + +++  GL
Sbjct: 476 AGKGHEEYQIIG-KEKRHFSDVEEVQKAFGL 505


>gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 494

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 129/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. novicida U112]
 gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
 gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella novicida U112]
 gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
          Length = 479

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 221/488 (45%), Gaps = 21/488 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I+ +  DSR       FVA+ G   DG+ +I   +A+G 
Sbjct: 2   KRINQILKFLDIKTLSQNNFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAKGV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++  S                +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 62  SLVLTDSH--------QFEDQKCVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY        + 
Sbjct: 114 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYKTISYYKKYQN--LV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AI+
Sbjct: 172 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAIV 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 230 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E
Sbjct: 347 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 406

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I  G       I   +R +AIR +IE  N+ D++++AGKGHE      NG K+  
Sbjct: 407 NIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGAKEYF 465

Query: 484 VDCDIIRE 491
            +  II+ 
Sbjct: 466 DERKIIKN 473


>gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 484

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 223/488 (45%), Gaps = 21/488 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +++  L I  +     +I  +  DSR      +FVA+ G   DG+ +I   +A+G 
Sbjct: 7   KRINQILKFLDIKTLSQNNFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKS 127
             ++  S                +  + N ++ LS  A   Y    P+NI+ +TGT+GK+
Sbjct: 67  SLVLTDSH--------EFEDQKRVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L K +SY  +     + 
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQN--LV 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R++G+      F+NL  DH+DYH+T   YF AK +LF+    +   AII
Sbjct: 177 MEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKLFQF--KRLKKAII 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 235 NIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 295 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPVKGRMEVI-ELDNDIKIVIDYAHTP 351

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ + +     +  +FGCGG+RD  KRPIM +IA + A   ++T+DN R E  E
Sbjct: 352 DALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIMAQIAEEYASKIVITEDNNRFESIE 411

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I  G       I   +R +AIR +IE  N+ D++++A KGHE      NG K+  
Sbjct: 412 NIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLASKGHECYLD-KNGAKEYF 470

Query: 484 VDCDIIRE 491
            + +II+ 
Sbjct: 471 DEREIIKN 478


>gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus RF122]
 gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus RF122]
          Length = 494

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 128/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      + +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 491

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 141/503 (28%), Positives = 223/503 (44%), Gaps = 26/503 (5%)

Query: 1   MKLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL DL+        LI           E  I  +S DSR IQ   +F  + G   DGH 
Sbjct: 1   MKLVDLLDVKNQIYHLIQGT------IEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQ 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           F   A  +GA  +V S    ++          P++ V++  K ++  A R Y     ++ 
Sbjct: 55  FAKMAEEKGAVCLVASKHVDVK---------IPVVYVEDVIKTMAFLAMRFYHDPSGSMS 105

Query: 118 -LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALS 175
            + VTGT+GK++    ++ + +++  S   IG               TTP  + L K+L+
Sbjct: 106 LIGVTGTNGKTTTTHIIRHLFEKNKKSCGMIGTNGIWYHQEHIYTPNTTPDSLTLQKSLA 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +  +GV   + E SSH L   R+  +      FTNL  +H++ H T   Y  AK  LF 
Sbjct: 166 KMKEEGVFICTSEVSSHALVMGRVQNVDFNVAVFTNLTHEHLETHHTMAEYGMAKSLLFA 225

Query: 236 E-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +          I   D    +V+    NA     S        + K +  + +K + T+ 
Sbjct: 226 QLGSGNNGKIAILNKDDTYAKVIASRCNATIWYYSTKDPSAEFYAKDMVYLASKTEFTLV 285

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G ++  + PL GEF V NAL A     A+       +E L     V GR +    N  
Sbjct: 286 FQGLEYPVISPLIGEFNVQNALAALAAYYALERHLEKGIEALSSFSGVEGRMQ-TIENDL 344

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIA 413
           G    VD+AHT + LE  +  ++ +   RII + G   G+RD   R  +G+IAL+ +D  
Sbjct: 345 GIHAIVDFAHTPDGLEKAMAALKKLNHKRIITMIGHDGGNRDNSIRQDLGRIALEYSDYV 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           + T +NPR EDP KI  E+++G+    +    +R +AI   + +  K D+L   GKGHE 
Sbjct: 405 VFTSENPREEDPMKIMKEMVNGLEVHHYEFVKDRHKAIDRVVALGQKGDILFFTGKGHEP 464

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
             ++   EK    +   ++E L 
Sbjct: 465 YQLIGC-EKIPFHEAQFVKEALE 486


>gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 494

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|317508858|ref|ZP_07966497.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252819|gb|EFV12250.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
          Length = 522

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 159/482 (32%), Positives = 239/482 (49%), Gaps = 22/482 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ V+  ++  Q G +FVA+ G K  G  + P A A+GA A++  +A +          
Sbjct: 36  RVSGVTQSAQTAQPGDLFVALPGAKTHGAKYAPLAKARGAVAVLTDAAGAALLEDVG--- 92

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +L     R  L   ++ +YG       ++ VTGT+GK++    ++ + Q +G  +  
Sbjct: 93  EIAVLTAATPRSSLGALSALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFQAAGRMTGV 152

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T   S +  +  TTP        L+ ++  GV  V +E SSH LD  R+DG +  
Sbjct: 153 IGTVETRIGSTSLASSFTTPEAPATQALLAVMAEAGVGAVLMEVSSHALDFGRVDGTRFA 212

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMK------ 258
           A  FTNL +DH+D+H   ++YF AK +LFE   P  +  A++  DDA+ + + +      
Sbjct: 213 AAGFTNLSQDHLDHHGDMESYFQAKAKLFEPGSPVAAGRAVVCVDDAWGERMSQVAREGA 272

Query: 259 -RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNAL 316
            R   A   V + G +  +  L +    H  Q+V +         F   L G     NAL
Sbjct: 273 GRGAQAPVTVATSGARADWTVLDRQEDDHGAQEVVVRDPRGQKLRFRLNLLGRHNAANAL 332

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A GL  A G++    L        VPGR E V          VDYAH   +L  +L  +
Sbjct: 333 LALGLAEAAGLEVGPELLRGWASISVPGRLERVDAGQ-DFLAVVDYAHKPEALVKVLHAL 391

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R  T GRI VV G GGDRDQGKRPIMG+     A++ +VTDDNPR+EDP  IRA+++ G 
Sbjct: 392 REHTEGRIAVVVGAGGDRDQGKRPIMGEACALGAELVVVTDDNPRTEDPAVIRAQVLAGA 451

Query: 437 -----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                    E G+R EAI  A+      D ++VAGKGHET   + NG K+   D +++ +
Sbjct: 452 QESGRAEVWEVGDRAEAIARAVGWARAGDTVLVAGKGHETYQEI-NGVKQPFDDREVLVQ 510

Query: 492 IL 493
            +
Sbjct: 511 AI 512


>gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 494

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 129/481 (26%), Positives = 223/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
              + +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QPLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|300858819|ref|YP_003783802.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686273|gb|ADK29195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206524|gb|ADL10866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis C231]
 gi|302331079|gb|ADL21273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276766|gb|ADO26665.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis I19]
          Length = 503

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 154/498 (30%), Positives = 234/498 (46%), Gaps = 19/498 (3%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
               L           ++  I E+S DS+ +  G +F A+ G +  G  +   A    A 
Sbjct: 10  TLGFLAALTGGELHGDKDIVIEEISLDSQELPQGGLFAALPGTRSHGAKY---AQETQAA 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
           AI+  +A +     +      P LVV+N R  L   ++ +YG+  +   I+ +TGTSGK+
Sbjct: 67  AILTDAAGAEILRESG--DTRPRLVVENVRGILGTVSAEIYGRPSDSLQIIGITGTSGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  ++     +G S   IG T T  +      +LTTP    L K  + + +QGVTHV 
Sbjct: 125 TTSYMLEAGLINAGKSVGLIGTTGTRINGVKIPTKLTTPEAPTLQKLFAQMLTQGVTHVV 184

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+      A  FTNL +DH+D+H T + YF AK  LF+      +   +
Sbjct: 185 MEVSSHALSLGRVSATHFAAAGFTNLSQDHLDFHPTMEEYFEAKALLFDPASSVHTKKTV 244

Query: 247 YADD-AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLF 304
              D  +  ++++R+      V           +  +       Q+  ++ E  +     
Sbjct: 245 ICIDEPWGLQMLERSGAEALSVSMASDTQADFVVSNLTVDAAGGQRFVVTHEDDEIAVDL 304

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG F V NA +A GL  ++GID             VPGR E V    +     VDYAH
Sbjct: 305 PIPGAFNVANAALAIGLASSVGIDLD-RFVAGLTAVSVPGRMERV-NRGQDFLAIVDYAH 362

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              ++  +L+ +R   +GR+ +V G GGDRD+ KR IMGK +   AD+ IVTDDNPRSED
Sbjct: 363 KPAAVAAVLEAVRRQAAGRVAIVVGAGGDRDRSKRAIMGKESALRADLVIVTDDNPRSED 422

Query: 425 PEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           P  IR  I+ G           E G+R EAI+ A+      D +++AGKGHE   ++  G
Sbjct: 423 PALIREAILTGAQKAATTAEIREVGDRREAIKQAVAWAQPTDAVIIAGKGHEVGQLIQ-G 481

Query: 479 EKKMSVDCDIIREILGLI 496
                 D + +   L  I
Sbjct: 482 INHHFDDKEELAIALEEI 499


>gi|227548908|ref|ZP_03978957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079036|gb|EEI16999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 545

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 160/501 (31%), Positives = 229/501 (45%), Gaps = 21/501 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L      ++ +        W    I+ V  ++R +  G +F A+ G +  G  F   
Sbjct: 19  LHELARIAGADVASSADN---GWAGVAISSVGLNAREVAPGGLFAALPGTRVHGAQF--- 72

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A    A AI+        D         P+LVVD+ R  L   ++ +YG     +  + V
Sbjct: 73  AAESPARAILTDREG--LDIVEAAGDRRPVLVVDDVRAVLGEVSAHVYGHPSRRMTLIGV 130

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSS 179
           TGTSGK++    +++    +G     IG T T          LTTP    L    + +++
Sbjct: 131 TGTSGKTTTTYLLERGLIAAGAQVGLIGTTGTRIRGRDVPTSLTTPEAPTLQALFARMAA 190

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTHV +E SSH L   R+DG    A  FTNL +DH+D+H T   YF AK   F+   P
Sbjct: 191 EGVTHVVMEVSSHALSLGRVDGTSFDAAGFTNLSQDHLDFHPTMDDYFQAKAAFFDPSSP 250

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGK 298
             + A +   D    E M    +   RV + G +G     +      N  Q + + ++G+
Sbjct: 251 VAASASVVCVDDEWGERMAELASHPLRVGTHGQEGLDCSARLTAVRDNGAQDIELRIDGQ 310

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +F  PLPG F V NA +A  L   +G D    +  LE   V PGR E +         
Sbjct: 311 THEFTLPLPGAFNVANAALATALARVVGADMPQFVRGLENAAV-PGRMERIDAGQ-DFVA 368

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   ++  +L+ +R    GRI +  G GGDRD  KR +MG+ A   AD+ IVTDD
Sbjct: 369 VVDYAHKPAAIAAVLETLREQVDGRIGIAVGAGGDRDTTKRAVMGQQAATRADLVIVTDD 428

Query: 419 NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           NPR+EDP  IRA ++ G           E G R EAI   +      D +VV GKGHE  
Sbjct: 429 NPRTEDPAAIRAAVLRGAREAGSGAEIRECGPRAEAIDQLVAWALPGDAIVVVGKGHEVG 488

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
            IV +       D + +R  L
Sbjct: 489 QIVGD-TTHHFDDREEMRRAL 508


>gi|290969167|ref|ZP_06560692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780673|gb|EFD93276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 499

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 156/500 (31%), Positives = 240/500 (48%), Gaps = 25/500 (5%)

Query: 9   KDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           K   EL  Q+S       +   ++  +++DSR +Q G +FV + G   DG  F  QA A+
Sbjct: 2   KTIEELCGQVSATHEVRGDARVQVRGITADSRDVQPGDLFVCVAGAHVDGKTFAAQAAAK 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++ +    L D        T  ++V +    +       Y    + +  + VTGT+
Sbjct: 62  GAVAVLTTEPLPLPD-------GTVQIIVPDIHAAVEEMVPFFYDYPGKKMRMIGVTGTN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    +  I + +G     +G     +         TTP  + L + L+ + ++G+T
Sbjct: 115 GKTTTTHIIAHILRTAGYHVGVLGTIHALMDDLELPIHNTTPDVVELQRFLAQMYARGIT 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           HV +E SSH L   R+ GI+     FTNL +DH+D+H+T + Y  AK +LF  L      
Sbjct: 175 HVVMEVSSHALALQRVAGIEYDTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPV 234

Query: 244 ----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                 +   D     +M++A      +     +   +    +          ++    D
Sbjct: 235 KKGKTAVLNRDDPWSVLMRKACGTAEVLTYGTEREASLRGTHLQVALKHSAFDVTGPFGD 294

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G F VYN L A G   A G+D   + + ++  H VPGRFE V    +   I 
Sbjct: 295 MHLQMNITGLFNVYNTLAAIGAAYAEGVDPETIGKAMQTFHAVPGRFELV-EAGQDFAIV 353

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDY+HT +SLE  L   R +   +IIVVFGCGGDRD+ KRPIMG+IA   ADI +VT DN
Sbjct: 354 VDYSHTPDSLEKALTTARAMNPHKIIVVFGCGGDRDRTKRPIMGRIAATHADIPVVTSDN 413

Query: 420 PRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           PRSE+PE I AE+  G+         +    +R  AIR A+ + N  D++++AGKGHET 
Sbjct: 414 PRSENPEAIVAEVAAGVKEALQPGQQYEVLTDRRRAIRRAVALANTGDMVLIAGKGHETY 473

Query: 473 HIVTNGEKKMSVDCDIIREI 492
            I+ + +     D +  R  
Sbjct: 474 QILKD-KTIHFDDREEARNA 492


>gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
 gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
          Length = 508

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 138/512 (26%), Positives = 229/512 (44%), Gaps = 32/512 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +++ K   +LI  +        + +I  V+  S+ +   ++F A+ G   DGH FI 
Sbjct: 4   KLNEVLLKLDQDLIKCVK----GSLDLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIE 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--I 117
            AI +G+  IV S             S+   + VD+   RKF+S F++  Y +  +   +
Sbjct: 60  IAIQRGSNVIVCSRDLDF------YSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKA 173
           + VTGT GKSSV  ++  + ++ G+    I        + S      R +TP    +   
Sbjct: 114 IGVTGTDGKSSVCYYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSF 173

Query: 174 LSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           L  +    V +  +E++SHGLD    RL  +   A  FTN+G +H+++H T Q Y N K+
Sbjct: 174 LCNMVKNEVQYAILESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKL 233

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            LF  +       +I  DD YS +       +    L       F+            + 
Sbjct: 234 GLFRAVSDDAGFGVINLDDFYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDST--RF 291

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVG 350
               +G  +     L G F V N + A  L   I  ID   +++ L  +  + GR +   
Sbjct: 292 EFYHKGVKYFANVNLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMD-SI 350

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   + +DYAHT  +   +    +   + R+I VFG  G+RD  KR + G+IA   +
Sbjct: 351 NLGQNFSVIIDYAHTPGAFSKLFPIFKRFATNRLISVFGSAGERDVEKRFLQGQIADIYS 410

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVV 464
           D+ I+ D++PR E+   I  +I  GI   +E        +R +AI  AI +    D++V 
Sbjct: 411 DLIILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLVVA 470

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIRE-ILGL 495
            GKGHE+  I  N E     + ++++  IL L
Sbjct: 471 LGKGHESSIIYKNREVFW-NEQEVVKNTILSL 501


>gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 493

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus 04-02981]
 gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 494

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 494

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 130/481 (27%), Positives = 223/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ V  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMVHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T + Y +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 509

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 143/476 (30%), Positives = 215/476 (45%), Gaps = 34/476 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +SSDSR I AG +F A  G+  DG  FI  AI +GA A+V  +   +   +A    + P+
Sbjct: 21  LSSDSRSIVAGDVFFAYPGDAADGRRFIDDAIERGAVAVVCEADGLVWHGAA----DFPL 76

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V   +      A+  YG+       +A+TGT+GK+S + ++     R       IG  
Sbjct: 77  LAVTGLKAHAGRVAALWYGQADAGLFTVAITGTNGKTSCSQWLAAALSRLTGPCAVIGTL 136

Query: 151 ST------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            T            +   TTP  I L + L  L   G + +++EASS GLDQ RL+G+ +
Sbjct: 137 GTGLFRRGSVDRLAETGYTTPDAILLQRRLRDLRRAGASALAIEASSIGLDQGRLNGLPV 196

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTN  RDH+DYH     Y  AK  LF++   +   A++  DDA    ++       
Sbjct: 197 QVALFTNFTRDHLDYHGDMATYEAAKTALFDQPGLQH--AVLNLDDAMGLRLLAHLQRTA 254

Query: 265 CRVLSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            ++   GY            +    + + H      +            L G F V N L
Sbjct: 255 PQLALTGYTLTDLQPAGITVLRAGDIRSSHAGTSFQLMTAAGTMLVRTRLVGSFNVSNVL 314

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G+ +A       +++ +E L  VPGR +  G       + +DYAHT ++L+  L  +
Sbjct: 315 GIIGVLLAQDCPLRAIVDAIETLTAVPGRMQQFG-GQDAPLVVIDYAHTPDALDKTLAAL 373

Query: 377 RTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           + +     G++  VFGCGGDRD GKRP MG +A   AD  I+T DNPRSE    I A+ +
Sbjct: 374 QQVAAQRHGKLWCVFGCGGDRDPGKRPQMG-LAALAADEIIITSDNPRSEVAAAIIAQTL 432

Query: 434 HGIPG-------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            G           +   +R  AI  A+      DV+++AGKGHE    +   +   
Sbjct: 433 QGTDERADSHAVPLVIEDRAAAILWAVRHAANADVILLAGKGHENYQEIRGKKLPF 488


>gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
 gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
          Length = 508

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 131/488 (26%), Positives = 216/488 (44%), Gaps = 27/488 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               + +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S        
Sbjct: 21  KGSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRDMDF--- 77

Query: 83  SATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
                 N   + VDN   RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + +
Sbjct: 78  ---YSPNVTYIKVDNFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLK 134

Query: 139 RSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + G+    I          +      R +TP    +   LS +    V +  +E++SHGL
Sbjct: 135 KKGIKVGFISTVFLDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGL 194

Query: 195 DQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           D    RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y
Sbjct: 195 DLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPY 254

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +       +    L       F+            +     +G  +     L G F V
Sbjct: 255 YADFKNAVKKSFTYSLKSNKADFFVSFIDEKIDST--RFEFYHKGVKYSANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I   D   +++ L  +  + GR + V    +   + +DYAHT  +   
Sbjct: 313 ENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSV-NLGQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA   +D+ I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIILCDEDPRGENGMCIIKD 431

Query: 432 IIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  GI   +         +R  AI  AI +    D++VV GKGHE+  I  N  +    +
Sbjct: 432 IAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGKGHESSIIYKN-RELFWNE 490

Query: 486 CDIIREIL 493
            +I++  +
Sbjct: 491 QEIVKNAI 498


>gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 494

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 128/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      + +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|311895543|dbj|BAJ27951.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Kitasatospora setae
           KM-6054]
          Length = 514

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 149/499 (29%), Positives = 225/499 (45%), Gaps = 22/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E    L +  ++    ++  V+ DSR ++ G ++VA  G    G  F   A A GA A
Sbjct: 22  LAEAARLLGLAGVEGP--EVTGVTHDSRAVRPGDVYVAFPGANHHGAAFAAGAAAAGAVA 79

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSS 128
           ++               +  P+LVVD+ R+ +   A+ +YG   E +  + +TGT+GK++
Sbjct: 80  VLTD----AAGAELAAAAGVPLLVVDSPREAMGPLAAAVYGAPSERMLMIGLTGTNGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  V+   + +G     IG            +  TTP    L   L+ +   G   V +
Sbjct: 136 TSYLVEGGLRGAGRLPGVIGTVEMRVGEERIKSERTTPEATELHAVLAVMREAGADAVVM 195

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R DG+      F NL  +H+D+H   + Y+ AK RLF++   +   A   
Sbjct: 196 EVSSHALVYGRTDGVVYDVALFNNLTPEHLDFHPDMEDYYRAKARLFQQGKSRRGVANR- 254

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPL 306
            DD+Y + +   A        + G          V    +     +     +      PL
Sbjct: 255 -DDSYGRRLAGEARIPMTTFSAAGDPAADWRAVDVRPGPSGSTFRVLGPNGEQADAAVPL 313

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V NAL A    +  G++ A  +  +  +  VPGR E V          VDYAH  
Sbjct: 314 PGLFNVSNALGAITALVVAGVELADAVAGVAAVPGVPGRLEEVDAGQ-DYVAVVDYAHKP 372

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L  +L ++R +T GR+ VV GCGGDRD  KR  MG IA  LAD A++T DNPRSED  
Sbjct: 373 DALSSVLASLREVTKGRLHVVVGCGGDRDPYKRGPMGAIAARLADTAVLTSDNPRSEDAL 432

Query: 427 KIRAEIIHGIPGFIE--------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I A ++ G     E          +R EAI  A+   +  D ++VAGKGHE    V  G
Sbjct: 433 AILATMLSGAAEVPEQERGEVLAVPDRGEAIALAVSRAHSGDTVLVAGKGHELGQYVK-G 491

Query: 479 EKKMSVDCDIIREILGLIL 497
           E +   D  ++R  +  I+
Sbjct: 492 EVRPFDDRQVLRTAIEQIM 510


>gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
 gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
          Length = 508

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 129/488 (26%), Positives = 217/488 (44%), Gaps = 27/488 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               + +I+ V+  S+ +   ++F A+ G   DGH FI  AI +G+  IV S        
Sbjct: 21  KGSLDLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNVIVCSRDMDF--- 77

Query: 83  SATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
                 N   + VD+   RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + +
Sbjct: 78  ---YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLK 134

Query: 139 RSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + G+    I          +      R +TP    +   LS +    V +  +E++SHGL
Sbjct: 135 KKGIKVGFISTVFLDDGDGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAILESTSHGL 194

Query: 195 DQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           D    RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y
Sbjct: 195 DLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPY 254

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +       +    L       F+            +     +G  +     L G F V
Sbjct: 255 YSDFKNAVKKSFTYSLKSNKADFFVSFIDEKIDST--RFEFYHKGVKYSANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I   D   +++ L  +  + GR + V    +   + +DYAHT  +   
Sbjct: 313 ENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSV-NLGQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA + +D+ I+ D++PR E+   I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADNYSDLIILCDEDPRGENGMCIIKD 431

Query: 432 IIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  GI   +         +R  AI  AI +    D++VV GKGHE+  I  N  +    +
Sbjct: 432 IAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGKGHESSIIYKN-RELFWNE 490

Query: 486 CDIIREIL 493
            ++++  +
Sbjct: 491 QEMVKNAI 498


>gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
 gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
          Length = 494

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 131/477 (27%), Positives = 220/477 (46%), Gaps = 24/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R + ++++DSR  ++G IFVA  G   D H F    I QG + IVV S   ++      
Sbjct: 20  DRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQGCQIIVVKSKQEVEG----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V  T +  SL A  L+           VTGT+GK+S+A+ +  I ++   +S
Sbjct: 75  --DVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSIATMIHLIYRKLHKNS 132

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G      +        TTP  + L K +      G   +++E SSHGL   RL G++
Sbjct: 133 AYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTMEVSSHGLALGRLRGVE 192

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                F+NL +DH+D+H T +AY +AK        E L KE   ++  DDA+S+ +    
Sbjct: 193 FDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDAFSEYLASVT 252

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                                +          +     +++   P  G+F + N + A  
Sbjct: 253 PYEIFTYGIDN--DAQFKAIHINESLQGVTFELDTPFGNYNVQSPYVGKFNISNLMAAMI 310

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + GI    ++E ++ L  V GR E +  N     + +DYAHT++ +  ++  ++   
Sbjct: 311 AVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNL-PIDLIIDYAHTADGMNKLIDAVKPFV 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PG 438
             ++I + G  G+RD  K P MG +A   AD  I T DNP ++DP+ + +E+  G     
Sbjct: 370 KRKLIFLVGMAGERDLTKTPEMGTVACR-ADYVIFTPDNPANDDPKMLTSELAKGATHDN 428

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           ++E  +R E IR AIE+   +D +V+A KG E   I+    K    D     +++GL
Sbjct: 429 YVEFEDRAEGIRHAIEVAEPEDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 494

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 130/481 (27%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
 gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
          Length = 535

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 141/527 (26%), Positives = 221/527 (41%), Gaps = 40/527 (7%)

Query: 2   KLQDLI--YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L +L+        L+      P    + +I  +  DSR    G I+ A  G  EDG  F
Sbjct: 6   RLSELLEFSSLAHTLVFLKDGRPFPLPDIEITSIRHDSRVCDQGSIYCAFRGLHEDGIDF 65

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           +  A+ +GA A+V           +      P +VV+  R+  +L     +G       +
Sbjct: 66  MDNALEKGAAAVVTDR------LPSRPHEGVPYIVVEAPRQAYALLCGSFFGNPASALKV 119

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKAL 174
           + VTGT GKS+   ++ Q+ +  G+ +  +   S        +   R +TP    L   L
Sbjct: 120 IGVTGTDGKSTTIEYLWQLLRGQGVRAGLLSTVSWDDGSGLVSSPYRQSTPEAWELHSFL 179

Query: 175 SYLSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           S     G++ V +E +SH L  +  RL GI      +T +  +H+++H + + Y +AK+ 
Sbjct: 180 SSCRDHGLSIVILETTSHALSMEYDRLAGIAFSGAIYTTMTSEHLEFHGSLERYVDAKLN 239

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQV 291
           L   LLP     I + +      +            +  G        +           
Sbjct: 240 LARRLLPGSPLVIPHDNARKDDIMKAAPQAKPFITAVHHGKSSGCSRKEDGILNGTCISA 299

Query: 292 T--------------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHL 336
           T              I+ +     + FP P  F + NAL AA +    I I    ++   
Sbjct: 300 TVLGMEPEQLAFTFAINDKELTTLWRFPSPFPFLLSNALEAAAMAHSLIDIPLEAIIAQF 359

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRD 395
           EKL  V GR      NS G  + +D+AHT+++   +++ I R      I VVFG  G+RD
Sbjct: 360 EKLSPVRGRA-IPVPNSLGVTVLIDFAHTADAFAHVMEEISRVHPKADITVVFGAAGERD 418

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------FIEKGNRIEA 448
             KR  MG  A       I+TD++PR+E  E IR +I  GIP         +   +R  A
Sbjct: 419 TTKRAPMGAQAARWCSRIIITDEDPRNEGYEAIRKDIEAGIPDALKRRRTILRIADRKRA 478

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           IR A+  LN+ DVL++ GKGHET     NG K    +    RE L +
Sbjct: 479 IREAVANLNRGDVLLLLGKGHETTIEYENGRKIPWDEMREAREALAV 525


>gi|259507672|ref|ZP_05750572.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|259164719|gb|EEW49273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 509

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 154/502 (30%), Positives = 229/502 (45%), Gaps = 22/502 (4%)

Query: 10  DFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQ 66
              EL   +   +F    ++ +I+ +  DS  +     IF A+ G+++ G  F     A 
Sbjct: 4   TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++     +            P L+VD+ R+ L + +S +YG    ++  + VTGTS
Sbjct: 64  GALAVLTDRDGAT--ILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTS 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  +++    +G     IG T T         +LTTP    L K    +   GVT
Sbjct: 122 GKTTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVT 181

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KES 242
           HV +E SSH L   R+ G      +FTNL +DH+D+H T + YF+AK   F    P    
Sbjct: 182 HVVMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAAD 241

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  DD +   + + A NA     +         L  V     +       +  +   
Sbjct: 242 HQVVCIDDEWGTRMAEVAGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPV 301

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG F V NA +A    +  G+D       + ++ V PGR E +    +     VDY
Sbjct: 302 TLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQVAV-PGRMERI-DEGQDFLAVVDY 359

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   ++  +L  +RT   GR+ VV G GGDRD  KR  MG+++   AD+ IVTDDNPRS
Sbjct: 360 AHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATKRAPMGELSARRADLVIVTDDNPRS 419

Query: 423 EDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           E P  IRA ++ G               E G+R EAIR  IE     D +VVAGKGHE  
Sbjct: 420 EVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVVAGKGHEVG 479

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            ++  G      D + +RE L 
Sbjct: 480 QLIA-GVTHHFDDREQVREALR 500


>gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O11]
 gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O46]
          Length = 494

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 128/481 (26%), Positives = 222/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                                  K +                 +    P  G+F + N +
Sbjct: 249 TTVTPYEVFSYGIDEEAQFM--AKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
 gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
          Length = 520

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 142/483 (29%), Positives = 228/483 (47%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81
           + ++   DSR I     FV +  +++D        + ++       A  ++        D
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLD 98

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137
                    PI+ V N R +L    +     H       I+AVTGT+GK++V+  + Q+C
Sbjct: 99  LDGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155

Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           Q SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ
Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L       +   D      
Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                +      S        + K V    +  ++ +     +   + PL G F V N L
Sbjct: 276 DYETADFQIIGYSQQKPNADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLL 335

Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            + A         +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L +
Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  G
Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  ++ 
Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512

Query: 491 EIL 493
           E L
Sbjct: 513 EFL 515


>gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 496

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 132/481 (27%), Positives = 226/481 (46%), Gaps = 10/481 (2%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 + K+N +  +S+ I    IF+A+ GN   G  FI +AI  G+  I++ +   L+
Sbjct: 15  ISTDISKIKLNSIKLNSKKIIKNDIFIALYGNCNHGKNFIFEAIKNGSSIILIETKNILK 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138
                   N PI+   N    LS  + + Y       N++ +TGT+GK++++ F+ +   
Sbjct: 75  HGIIYFIKNIPIIYFYNLNYSLSELSGKFYLHPSRYMNVIGITGTNGKTTISHFIAKWLF 134

Query: 139 RSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G     IG             + TT S I   K L++   + +  V +E SSHGL Q+
Sbjct: 135 LLGEKIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNFFLKKNINTVVMEVSSHGLHQN 194

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKE 255
           R++ I   +  F+NL +DHIDYH+    Y  +K +LF +L   +            + K+
Sbjct: 195 RVNNINFFSAIFSNLSQDHIDYHKNMMQYEQSKWKLFSKLNVYKYIINYDDVIGKNWIKK 254

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +      +  +     ++   +++K +   +   +++IS           + GEF + N 
Sbjct: 255 IPNSIIVSTKKNSIKKFKNLKMYVKDIFFHYFGTKLSISSSWGSCVINTKIFGEFNINNL 314

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L++    + +G +   +    E L +  GR +          + VDYAHT ++LE +L  
Sbjct: 315 LLSFVALLTLGYNFKSLANVAENLTMPNGRMKIFYVKKIPR-VIVDYAHTPDALEKVLSA 373

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I+      I  +FGCGGDRD+ KR +MGKI    +   I+T+DNPRSE   KI  +I  G
Sbjct: 374 IKLHFKKNIWSIFGCGGDRDKSKRRVMGKICDLYSINIILTNDNPRSESETKIFNDIKIG 433

Query: 436 IPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           I          +R  AI+ AI+  N++D++++ GKGHE   +    +K    D  ++ +I
Sbjct: 434 IKNLNKVNIIPSREHAIKFAIDNSNEKDIVLILGKGHEEHQVFK-YKKVFFSDQILVNKI 492

Query: 493 L 493
           L
Sbjct: 493 L 493


>gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 7169]
 gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 12P80B1]
          Length = 520

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 142/483 (29%), Positives = 228/483 (47%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81
           + ++   DSR I     FV +  +++D        + ++       A  ++        D
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLD 98

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137
                    PI+ V N R +L    +     H       I+AVTGT+GK++V+  + Q+C
Sbjct: 99  LDGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155

Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           Q SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ
Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L       +   D      
Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                +      S        + K V    +  ++ +     +   + PL G F V N L
Sbjct: 276 DYETADFQIIGYSQQKPNADFYAKAVRLSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLL 335

Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            + A         +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L +
Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  G
Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  ++ 
Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512

Query: 491 EIL 493
           E L
Sbjct: 513 EFL 515


>gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 528

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 150/495 (30%), Positives = 228/495 (46%), Gaps = 21/495 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L    +       +  I  VS DS     G +FV + G    G  F  +A+A GA A++ 
Sbjct: 31  LAPASAEDAAALNDLSILGVSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLT 90

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVAS 131
            S  +     +     TP+LV  + R  +   ++  Y      ++  AVTGT+GK++ A 
Sbjct: 91  DSDGAQIVHES--APGTPVLVHGDPRAIVGPLSAEAYHHPARGLITTAVTGTNGKTTTAY 148

Query: 132 FVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           F+  I           G     +   + ++  TT     L + ++      V   S+EAS
Sbjct: 149 FLDAILSAHVGGCMVAGTVELRVGEHSVESPRTTVEAPVLQRMMALAVEDRVGAASLEAS 208

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SH +  HRLDGI +    FTNL RDH+D+H+T + Y  AK RLF     +        DD
Sbjct: 209 SHAIVLHRLDGIVVDVAGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARRGVV--CVDD 266

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306
            +   +   A     RV +         ++    V    +    T+     +  +   PL
Sbjct: 267 QWGAALAADAPIEIDRVRAYPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPL 326

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHT 365
           PG   V NA +A  + I  G+ +A     L   H +PGR + +           VD+AHT
Sbjct: 327 PGLVNVQNAALALVMAIRAGVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHT 386

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             ++E+ LK +R IT GR+IVVFG  GDRDQGKRP++G++   LAD+ ++TD+NPRSEDP
Sbjct: 387 PEAMELALKAVRPITPGRLIVVFGSDGDRDQGKRPMLGQVCARLADVLVITDENPRSEDP 446

Query: 426 EKIRAEIIHGI-------PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           + IR  I+ G+           E    R +A+R  +E+    D ++V GKGHE    +  
Sbjct: 447 QLIRDAILDGVRGVRPDLKDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMA- 505

Query: 478 GEKKMSVDCDIIREI 492
           GE     D  ++ E 
Sbjct: 506 GEFIRYNDAPVMAEA 520


>gi|254430365|ref|ZP_05044068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
 gi|197624818|gb|EDY37377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
          Length = 500

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 156/487 (32%), Positives = 235/487 (48%), Gaps = 15/487 (3%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    E  ++ +S DSR +  G +FV + G + DG  +   A+  GA A VV +A +  
Sbjct: 16  VPEALGEATVHTISCDSRRVGPGTLFVGLPGTQVDGGAYWRSALKSGACAAVVGTAAAAA 75

Query: 81  DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
           D  +T     P++VV+    ++  L A+  +G+  + +  + VTGT+GK++    ++ + 
Sbjct: 76  DPPSTTD---PVVVVEGPVARWAGLLAAAFWGEPSQRLALIGVTGTNGKTTTTHLIEHLA 132

Query: 138 QRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +G  +   G   +    +A   + TT     L   L+  +  G    ++E SSH LDQ
Sbjct: 133 ATAGTPAALFGTLENRWPGYAVTAQHTTAFADLLQAQLAQAADAGARIGAMEVSSHALDQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--PKESPAIIYADDAYSK 254
            R+ G +     FTNL +DH+DYH + +AYF AK  LF   L     +P  +   D    
Sbjct: 193 QRVAGCRFAGAVFTNLTQDHLDYHPSMEAYFAAKASLFAAPLLLESATPNAVVNGDDPWG 252

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             + R     C   S+      + +  +    +  +  +        F  PL G F + N
Sbjct: 253 AQLARQLGERCWTSSLEDPSAHLRIDSLEMDSSGVRGRLVTPLGAGHFRSPLLGRFNLMN 312

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--GTNSRGGRIYVDYAHTSNSLEMI 372
            L A G     G+   ++LE L     VPGR E V  G       + VDYAHT + LE  
Sbjct: 313 LLQAVGALAQQGLPLPMLLEGLASFRGVPGRMERVLAGGREDQPAVLVDYAHTPDGLENA 372

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+  R  T GR+I VFGCGGDRD+GKRP MG IA  LAD  +VT DNPR+EDP++I  ++
Sbjct: 373 LRASRPFTRGRLICVFGCGGDRDRGKRPQMGAIAARLADRVVVTSDNPRTEDPQRILDDV 432

Query: 433 IHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           + GIP       + +R  AI  AI      D++++AGKGHE   I+    K    D +  
Sbjct: 433 VAGIPAGTELEVEVDRARAIAAAIAGAGPTDLVLIAGKGHEDYQILGT-TKIHFDDREEA 491

Query: 490 REILGLI 496
            + L  I
Sbjct: 492 EKALRGI 498


>gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 492

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 130/502 (25%), Positives = 212/502 (42%), Gaps = 27/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ L+      L+           + ++ ++  DSR    G  FV IVG + D H F 
Sbjct: 1   MKLEQLLEGVPFTLVQGS-------LDTEVQDIIYDSRKAAPGLAFVCIVGTQRDSHEFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
               A+G   +V+     L            ++ V+++R  ++L +  L+G     +  +
Sbjct: 54  ADCAAKGVSVLVIQHDIDLSAMP-----GVTVVKVESSRYAMALMSGNLFGNPSRQMTMI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            VTGT GK++    ++ + + +G     IG           +   TTP    L K     
Sbjct: 109 GVTGTKGKTTTTHMIKSVLEAAGKKVGMIGTNGIYFMGCHQETANTTPESYELQKTFRQF 168

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SS GL   R+ G+    G FTNL  DHI   + +        +     
Sbjct: 169 LDAGCDVALMEVSSQGLMMDRVAGVHYDIGVFTNLSPDHIGPGEHKTFEEYRSWKGQLFR 228

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                      DD  ++ +++                      ++   H+   V   V G
Sbjct: 229 RCDVGVVN--IDDENTEALLEGHTCKLVTYGRSEKADYRAEGCELLRTHDFLGVAFHVSG 286

Query: 298 KDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +D       +PGEF VYNAL A  +   +G+     +       VV GR E V  +    
Sbjct: 287 RDNMDVRVNMPGEFSVYNALAALAVGKVLGL-PDAAIHEGLGKCVVKGRVELVPISK-KF 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +DYAH   S E +L  +R     R++VVFGCGG+R + +R  MG+    +AD +I+T
Sbjct: 345 TILLDYAHNEVSTESLLTTLRAYHPHRLVVVFGCGGNRSKLRRYGMGETCAKMADFSILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +DN R E  E I A+I  G+        F+E  +R++A+  A++   + D++ V GKGHE
Sbjct: 405 EDNNRFEKIEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLIAVIGKGHE 464

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
           T      G K   ++ +++ E 
Sbjct: 465 TYRD-REGVKTPFLERELLEEY 485


>gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
          Length = 494

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 128/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      + +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNELIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 156/506 (30%), Positives = 235/506 (46%), Gaps = 28/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DLI       +              +   V+ D+  +  G +F A+ G+   G   
Sbjct: 1   MKLSDLIAGQDHHALRGTPDR------TDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHA 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  A+A+GA A++V               +  +L V + RK  ++ ASR +G+    +  
Sbjct: 55  VAPAVARGAVAVLVDQQAPT---LPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172
           +A+TGT+GK+SV+   + + +         IG               + L+TP    L  
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQY 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK+R
Sbjct: 172 LLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF         A++ ADD     + K    A       G          +    +  + T
Sbjct: 232 LF---QGLCRCAVVNADDPVGAGIRKLMPGAVTTYALDGDADY--RASDLTVDASGSRFT 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+ +    P PG F V NAL     C  +G   A ++  LE++  +PGRFE +  +
Sbjct: 287 LHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQIS 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   +D+
Sbjct: 347 G-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTHSDL 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      D++++AGKG
Sbjct: 406 CVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAGKG 465

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            E    V  GE     D   +RE++G
Sbjct: 466 SEPHQSV-RGELLPFSDMATVRELIG 490


>gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
 gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
          Length = 504

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 128/504 (25%), Positives = 220/504 (43%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + D+I     ++       P      K+N +S DSR I  G +FVAI G   DGH +I
Sbjct: 7   MNILDIIEN--IKIKTIYGSLP-----TKVNNISQDSRKITKGDVFVAIKGYTVDGHNYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENIL 118
            + IAQGA  ++ S       +      +  ++VV      K  S+ A ++   +  + +
Sbjct: 60  EKVIAQGAALVIASR------YEDYNVQDCAVVVVKEHEIEKIASMLAKKINSGNKVHTV 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--TTPSPIYLAKALSY 176
           AVTGT+GK+S+++ V  + +  G SS  IG      +  +   L  TTP  + L   +  
Sbjct: 114 AVTGTNGKTSISTLVHNMLRELGESSSYIGTNGFGKNDDEPIYLGNTTPDVVTLHNKIGE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLF 234
           L  + + +++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y    + +   
Sbjct: 174 LHREDIKNLAFEASSHAMVLGRIYNVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFST 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI----HNKQQ 290
                 E+   +   D     +M +         SV  +    +   +         K  
Sbjct: 234 LGNNFSEAKYGVLNKDDEYYSIMSKCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTT 293

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+     +++      G+F V N L A       G     ++  L  L  + GR E +G
Sbjct: 294 FTLKSPEGEYECQTNYIGDFMVSNVLAALIAVWLKGYSVEKLVNILPNLGALYGRMEILG 353

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409
                  I  D+AHT +  + +L+  R I   +  ++    GG RD  K P++G+I  + 
Sbjct: 354 -EDLPIDIISDFAHTPDGYKKLLEATREIRKNKRTLLLTGMGGGRDISKGPLIGEIISE- 411

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  ++T D+PR ED E +   I  G+    + +   R +A++  I++    DV+++A K
Sbjct: 412 ADYVVITTDSPRDEDVEVLMGTIEKGMTHKNYEKVWFRTDAVKRIIQLAEPGDVVILASK 471

Query: 468 GHETVHIVTNGEKKMSVDCDIIRE 491
           G E   I+  G+K    D  +  E
Sbjct: 472 GREDYEILRGGKKVWHSDPVVAIE 495


>gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
 gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
          Length = 508

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/488 (26%), Positives = 214/488 (43%), Gaps = 27/488 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               + +I+ V+  S+ +   ++F A+ G + DGH FI  AI +G+  IV S        
Sbjct: 21  KGSLDLEISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNVIVCSRDMDF--- 77

Query: 83  SATIRSNTPILVVDN--TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
                 N   + VD+   RKF+S F++  Y +  +   ++ VTGT GKSSV  ++  + +
Sbjct: 78  ---YSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVCYYIYLLLK 134

Query: 139 RSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + G+    I          S      R +TP    +   LS +    V +  +E++SHGL
Sbjct: 135 KKGVKVGFISTVFFDDGNGSLIKNPYRQSTPESTEIHLFLSNMVKNNVQYAILESTSHGL 194

Query: 195 DQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           D    RL  +   A  FTN+G +H+++H T Q Y NAK+ LF  +       +I  DD Y
Sbjct: 195 DLKTARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVSDDAGFGVINFDDPY 254

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             +       +    L       F+            +     +G  +     L G F V
Sbjct: 255 YSDFKNAVKKSFTYSLKSSKADFFVSFIDEKIDST--RFEFYHKGVKYFANVSLLGSFNV 312

Query: 313 YNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            N + A  L   I   D   +++ L  +  + GR + V    +   + +DYAHT  +   
Sbjct: 313 ENIMAALILVSQILNSDIQDIVDKLICIKSLDGRMDSV-NLGQNFSVIIDYAHTPGAFSK 371

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +    +   + R+I VFG  G+RD  KR + G+IA   +D+ ++ D++PR E+   I  +
Sbjct: 372 LFPIFKRFATNRLISVFGSAGERDVAKRFLQGQIADIYSDLIVLCDEDPRGENSMYIIKD 431

Query: 432 IIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  GI   +         +R  AI  AI +    D++V  GKGHE   I  N E     +
Sbjct: 432 IAKGIVNKVVNQDLFFIPDRRLAIEKAISLARAGDLVVALGKGHENSIIYKNKE-LFWNE 490

Query: 486 CDIIREIL 493
            + ++  +
Sbjct: 491 QEAVKNAI 498


>gi|257453538|ref|ZP_05618828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
 gi|257448996|gb|EEV23949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
          Length = 520

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 146/499 (29%), Positives = 234/499 (46%), Gaps = 39/499 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHL------FIPQAIAQGAEAIVVSSAYSL 79
            +   +   DSR +  G +FV +      D         ++ Q   + A  ++     S 
Sbjct: 26  NQPFGQFVVDSRQVGQGDVFVLLKSQNATDSLDLEKVAGYLAQVSDK-AAFVLSEIDVSA 84

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASR-LYGKHPEN---ILAVTGTSGKSSVASFVQQ 135
                 +    PI+ +   R FL       L  +HP     ++AVTGT+GK++V+  V Q
Sbjct: 85  IQSQFML----PIIYLPTIRDFLGSLIQTSLQQQHPTQLPAVIAVTGTNGKTTVSQLVAQ 140

Query: 136 ICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +  +SG+ +  +G            +  TT     L  A+   + QGV  +++EASSHGL
Sbjct: 141 LISQSGIKTAVMGTAGNGVLPNLTPSTHTTLEVFNLQHAIDDFAKQGVQALAIEASSHGL 200

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYS 253
            Q RL G+ +    FTNL RDH+DYH     Y  AK RLF++   P  + AII  DD +S
Sbjct: 201 HQQRLQGVPINVAMFTNLSRDHLDYHTDMDDYAQAKARLFDKAHFPTLTHAIINLDDEFS 260

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-------EGKDFDFLFPL 306
           + +++ A+ +   V +               + + Q   +++          +     PL
Sbjct: 261 ELMIEAANASHLTVWTYSLTNDQADFFAKTILPSLQGGDLTIALSKAVTPQGELTVNSPL 320

Query: 307 PGEFQVYNALVAAGLCIA------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            G F V N L +     A      +G+  A +   +  L    GR + V + S      V
Sbjct: 321 LGRFNVANLLASIAGAFALSQSAAMGLSVAQIQAAVPTLRGATGRMDRVPSTSS--CFIV 378

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT ++LE +L ++++  +G +  VFGCGGDRD+GKRP+M +  L LAD  I+T DNP
Sbjct: 379 DYAHTPDALEQVLTSLKSHCTGELWAVFGCGGDRDKGKRPLMAQAGLRLADKVILTADNP 438

Query: 421 RSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           RSEDP  I  ++  G+        I + +R +AI  A++     D++V+AGKGHET   +
Sbjct: 439 RSEDPNAILNDMQAGMTCQQHYQAIIEPDRQKAIEYAVQHAKPSDIVVIAGKGHETYQEI 498

Query: 476 TNGEKKMSVDCDIIREILG 494
             G +    D  +++  + 
Sbjct: 499 K-GVRHDFDDKVVVKNAIE 516


>gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
 gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
          Length = 503

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 206/477 (43%), Gaps = 23/477 (4%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR +Q G  F+A  G+  DG  F+  A+A GA   +V +           R       
Sbjct: 25  TDSRLVQRGDAFIAWPGHATDGRRFVKAALAAGAATCLVEAEGVDAHGFDDARIGA---- 80

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +   +      A   +G+  +   ++A TGT+GK+S A +  Q     G     +G    
Sbjct: 81  LPGLKAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLLGRRCGVVGTLGI 140

Query: 153 -------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                    +      LTTP P+ L   L  ++  G    ++EASS G+ +HRL  +++ 
Sbjct: 141 GEPPLPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIGIVEHRLAALRIE 200

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTN  RDH+DYH +  AY+ AK  LF     K +   +              H    
Sbjct: 201 VALFTNFTRDHLDYHGSMDAYWAAKRVLFGWPGLKAAAVNLDDAQGAELARSLAGHVPEL 260

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S+      +  + +  +      T+   G        L G++   N L   G   A+
Sbjct: 261 WTYSLERDDVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYNAANLLAVIGGLRAL 320

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVDYAHTSNSLEMILKNIRTI--- 379
           G+  A  +  + +L  VPGR + V  ++       + VDYAHT ++LE  L  +R +   
Sbjct: 321 GVPLADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDALEKALGALRPLAAA 380

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGI 436
             GR++ VFGCGG+RD  KRP+M  +A  LAD  I T DNPR E P  I  ++       
Sbjct: 381 RGGRLLCVFGCGGNRDASKRPLMAAVAERLADRVIATSDNPRDEAPAAILVDVAAGFAAP 440

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  +R  AI  AI     +DVL++AGKGHE    +  G K+   D    R+ L
Sbjct: 441 AAVEMIEDRRAAIARAIGSAEARDVLLIAGKGHEDYQEIA-GVKQPFSDVAEARQAL 496


>gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
 gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
          Length = 494

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 128/481 (26%), Positives = 224/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 306

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                  + G    ++++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 307 AVMIAVWSKGTSLEMIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 365

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 366 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 424

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 425 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 479

Query: 495 L 495
           L
Sbjct: 480 L 480


>gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus COL]
          Length = 492

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/481 (26%), Positives = 223/481 (46%), Gaps = 24/481 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 15  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVVNKE------ 68

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  LY      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 69  -QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 127

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 128 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 187

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
             ++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 188 RSVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 247

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R             +      K +                 +    P  G+F + N +
Sbjct: 248 --RTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNISNIM 305

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A     + G     +++ +E L  V GR E +  +     + +DYAHT++ +  ++  +
Sbjct: 306 AAMIAVWSKGTSLETIIKAVENLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAV 364

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           +     ++I + G  G+RD  K P MG++A   AD  I T DNP ++DP+ + AE+  G 
Sbjct: 365 QPFVKQKLIFLVGMAGERDLTKTPEMGRVACR-ADYVIFTPDNPANDDPKMLTAELAKGA 423

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +IE  +R E I+ AI++    D +V+A KG E   I+    K    D     +++G
Sbjct: 424 THQNYIEFDDRAEGIKHAIDIAEPGDTVVLASKGREPYQIMPGHIKVPHRD-----DLIG 478

Query: 495 L 495
           L
Sbjct: 479 L 479


>gi|25028614|ref|NP_738668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|30316046|sp|Q8FNT5|MURE_COREF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23493900|dbj|BAC18868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 526

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 154/502 (30%), Positives = 229/502 (45%), Gaps = 22/502 (4%)

Query: 10  DFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQ 66
              EL   +   +F    ++ +I+ +  DS  +     IF A+ G+++ G  F     A 
Sbjct: 21  TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 80

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A++     +            P L+VD+ R+ L + +S +YG    ++  + VTGTS
Sbjct: 81  GALAVLTDRDGAT--ILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTS 138

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  +++    +G     IG T T         +LTTP    L K    +   GVT
Sbjct: 139 GKTTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVT 198

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KES 242
           HV +E SSH L   R+ G      +FTNL +DH+D+H T + YF+AK   F    P    
Sbjct: 199 HVVMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAAD 258

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  DD +   + + A NA     +         L  V     +       +  +   
Sbjct: 259 HQVVCIDDEWGTRMAEVAGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPV 318

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG F V NA +A    +  G+D       + ++ V PGR E +    +     VDY
Sbjct: 319 TLALPGAFNVANATLALAAAVRAGVDPVAFARGMAQVAV-PGRMERI-DEGQDFLAVVDY 376

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AH   ++  +L  +RT   GR+ VV G GGDRD  KR  MG+++   AD+ IVTDDNPRS
Sbjct: 377 AHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATKRAPMGELSARRADLVIVTDDNPRS 436

Query: 423 EDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           E P  IRA ++ G               E G+R EAIR  IE     D +VVAGKGHE  
Sbjct: 437 EVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVVAGKGHEVG 496

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            ++  G      D + +RE L 
Sbjct: 497 QLIA-GVTHHFDDREQVREALR 517


>gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
 gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
          Length = 483

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 133/488 (27%), Positives = 226/488 (46%), Gaps = 16/488 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L+       + KI  + SDSR+++   IF  I G   DGH +I  AI QGA+ IV S
Sbjct: 1   MKRLNELYDIDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAKVIVHS 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
                       ++    ++V+NT + L+  ++  Y      +  + VTG+SGK+ VAS 
Sbjct: 61  KEL------LEKKNGIIYILVENTLEELNRVSNIFYDYPSNKMKIIGVTGSSGKTVVASM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++    R   + +    +   + F +D   TTP  +YL + L  ++  GV  V++EASSH
Sbjct: 115 IKDAMSRYCNTGYIGTISLEYNGFKEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSH 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL   R+D +       TN+G +H+D+H T++ Y  AK +LFE + P     +       
Sbjct: 175 GLALGRVDSVNFSVAVMTNIGAEHLDFHGTREQYILAKQKLFEMIKPSGWVVLNS---DD 231

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              +  +    G  +         +  K      +  +  +S +G  +    P+  +F +
Sbjct: 232 ENFLRIKNSTKGKILTYGINNQSDVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNI 291

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L      IA+G D  +VL+ ++++  V GR E +    +   + +DY    N+ E I
Sbjct: 292 YNVLALVCTLIAMGCDEKMVLQAVKEVKPVEGRMELIKAK-QNFSVIIDYCQHINNYEQI 350

Query: 373 LKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            + + ++    GR+I V G  G R+   R  +GK+A    D  I+T  + R E+   I  
Sbjct: 351 FEFVDSVRQNKGRLIAVLGAPGKRNYKMRREIGKVANKYLDHVILTQLDDRGENVYDICK 410

Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            I   I     +   +R  AI  AIE+  K D++++ GKGHE    +  G      D  I
Sbjct: 411 TIQAEIVDISSVIIPSRQVAIEQAIEIACKDDIILILGKGHEKFISLEVGHVDYPGDSTI 470

Query: 489 IREILGLI 496
           ++E +  I
Sbjct: 471 VKEAIERI 478


>gi|300788102|ref|YP_003768393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
 gi|299797616|gb|ADJ47991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
          Length = 514

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 229/504 (45%), Gaps = 26/504 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+ +    LI           E  +   +  ++H+  G +F A+ G +  G  F  Q
Sbjct: 18  LATLLARADARLIAGS----PDAAELTVTGTTLRAQHVLPGDLFAALPGARAHGADFSDQ 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA A++  +A +  +  A   +  PILV  + R  L   A+ +YG+     L+V G
Sbjct: 74  AVAAGAVAVLTDAAGA--ERPALRDAGVPILVHPDPRAALGEIAAWIYGEPSL-ELSVLG 130

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAKALSYLS 178
            +G S   +    +      +    G   T+ +    +RL    TTP    L   L+ + 
Sbjct: 131 VTGTSGKTTTSYLVDAGLQAAGLTTGLIGTVETRIAGDRLVSGFTTPEAPDLQALLAVML 190

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GVTHV +E SSH L   R++G +   G+FTNL +DH+D+H+  Q YF AK  LF+   
Sbjct: 191 ERGVTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDGRS 250

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             E   +    D+   + +                       +      +       +G 
Sbjct: 251 THEVVVV----DSAWGQALLTPQTITVTTDPGTEAAWKATDLEATPQGEQTFTLHGPDGA 306

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PLPGEF V NA++AA +    G+    ++  L ++ V PGR E V         
Sbjct: 307 RAAARIPLPGEFNVANAVLAAAILSTAGVSLEHIVAGLAQVQV-PGRMERVHVGQE-FTA 364

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   ++   L  +R  T GRII V GCGGDRD  KRPIMG+ A   +D+ IVTDD
Sbjct: 365 VVDYAHKPAAVAQGLDALRARTEGRIITVLGCGGDRDTAKRPIMGEAAARRSDVLIVTDD 424

Query: 419 NPRSEDPEKIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           NPRSEDP  IRA ++ G            +E G+R EAI  A+ +    D++ +AGKGHE
Sbjct: 425 NPRSEDPAAIRAAMLAGARSVGPAEGGEILEIGDRREAIAHAVSLAGPGDIVFLAGKGHE 484

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
           +      G      D D +   + 
Sbjct: 485 SGQE-AGGVVHPFSDRDELAAAIR 507


>gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 537

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 148/473 (31%), Positives = 226/473 (47%), Gaps = 23/473 (4%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR 99
           I  G +F A+ G +  G  F   A+A+GA AI+   A       + + S+ P+LV D+ R
Sbjct: 63  IVEGDLFAALPGARAHGAEFAADALARGATAILTDEAGFA--LVSALGSDMPVLVHDDPR 120

Query: 100 KFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSF 156
             L   ++ +YG+  E +  + +TGTSGK++ +  V+     +G ++  +G     +   
Sbjct: 121 GVLGELSATIYGRPSEKMQVIGITGTSGKTTTSYLVEAALTAAGRTTGLVGTIETRMRGR 180

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
              + LTTP    L    + +  QG+  V +E SSH L   R+DG++   G+FTNL +DH
Sbjct: 181 RVPSALTTPEAPQLHALFAVMLEQGIDTVVMEVSSHALSLGRVDGVRFDVGAFTNLSQDH 240

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AHNAGCRVLS 269
           +D+H+  + YF AK RLF       +   +   D    + M                   
Sbjct: 241 LDFHRDFEDYFAAKARLFAADSSVHAQHAVICIDDVWGQRMADVARGAHSIVTTVATTPD 300

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                       V    ++     + EG   D    LPG++ V NA +A  LC A+G+D 
Sbjct: 301 SEGAVWTAGPATVSPSGSQTFALTTAEGTTLDVELRLPGQYNVANASLAVALCAALGVDP 360

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              +E +  + V PGR + +          VDYAH   ++E ++  +R    GR+ VV G
Sbjct: 361 RDAVEGIAGVDV-PGRVQRIDRGQ-DFLAVVDYAHKPAAVEAVIATLREQVRGRVAVVVG 418

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIE 441
            GGDRD GKRP+MG  A   AD+ I+TDDNPRSEDP KIRA +  G             E
Sbjct: 419 AGGDRDAGKRPLMGAAAARGADLLIITDDNPRSEDPAKIRAAVREGALGVPESERGQVWE 478

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +R +AI  A+      DV++VAGKGHE    + +G K    D D++ + + 
Sbjct: 479 VADRAKAIADAVGWAQAGDVVLVAGKGHEIGQEI-HGVKYPFDDRDVLGDAIE 530


>gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC8]
          Length = 520

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 143/483 (29%), Positives = 229/483 (47%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81
           + ++   DSR I     FV +  +++D        + ++       A  ++        D
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLD 98

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137
                    PI+ V N R +L    +     H       I+AVTGT+GK++V+  + Q+C
Sbjct: 99  LDGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155

Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           Q SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ
Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L       +   D      
Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A +      S        + K V    +  ++ +     +   + PL G F V N L
Sbjct: 276 DYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLL 335

Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            + A         +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L +
Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  G
Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  ++ 
Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512

Query: 491 EIL 493
           E L
Sbjct: 513 EFL 515


>gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 103P14B1]
 gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 46P47B1]
 gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC1]
 gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC7]
 gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis O35E]
 gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 101P30B1]
          Length = 520

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 143/483 (29%), Positives = 229/483 (47%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81
           + ++   DSR I     FV +  +++D        + ++       A  ++        D
Sbjct: 40  QFDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLD 98

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137
                    PI+ V N R +L    +     H       I+AVTGT+GK++V+  + Q+C
Sbjct: 99  LDGI---QIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155

Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           Q SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ
Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L       +   D      
Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A +      S        + K V    +  ++ +     +   + PL G F V N L
Sbjct: 276 DYEAADFQIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLL 335

Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            + A         +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L +
Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  G
Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  ++ 
Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512

Query: 491 EIL 493
           E L
Sbjct: 513 EFL 515


>gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 497

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 143/503 (28%), Positives = 237/503 (47%), Gaps = 23/503 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK ++LI     E +    +F     ++ + ++ +DSR ++AG  F+AI G   DGH  I
Sbjct: 3   MKQKELI-----EALYNKKLFDQIDLDQTVTKLVNDSRQVEAGACFIAIKGENFDGHQAI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            + +AQGA+ I+V     L     TI +N   ++VD++ +  ++ A++ Y +      ++
Sbjct: 58  AEVVAQGAKLIIVEQ---LPANYQTIPAN--FVLVDSSFRAQAILANKFYQEPSRKLKVV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++ +S +  +       + +IG      +        TTP+ ++L    + +
Sbjct: 113 AVTGTNGKTTTSSMISDLLTSLDHKTGKIGTLHYKVADTYYPAVNTTPNALHLQALFAEM 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
             +G     +EASSH L   RL    +    FTNL R+H+D+H+T   Y  AK  LF + 
Sbjct: 173 LERGCQDAVIEASSHALSLGRLWYTDVDCAIFTNLTREHLDFHKTMDNYAYAKSLLFSQL 232

Query: 237 ---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       I   D    EVM +A  A     S+  +    +  ++          +
Sbjct: 233 GQAFHQGRPRLAIINKDDPYWEVMAQATAADLVTYSLVDEEATAYASQIQNKETGLAFKL 292

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTN 352
               + F+   P+ G + V N L A         ID A +L   +    V GR E +  N
Sbjct: 293 HFNDQVFELELPMRGHYNVSNYLAAFLCLACYYEIDVANILRATKDFKGVSGRMEVLALN 352

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLAD 411
            +   + VD+AHTS++LE +++ + +   GR++ + G   G+RD G RP +G +  + AD
Sbjct: 353 -KDFDVVVDFAHTSDALERVMQELVSHKQGRLLALMGHSGGNRDSGARPGIGDVLFNYAD 411

Query: 412 IAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             + T DNPR ED  KI  E+I  H    +    +R  A+ T +EM    DVL+ AGKG 
Sbjct: 412 YIVFTADNPRFEDVTKICHEMIGQHDEKPYTIVEDRKAAVITMLEMAQSGDVLLFAGKGG 471

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           E   I+ + +K    D + I   
Sbjct: 472 EGYQIIGD-QKIPYDDAEEIMAY 493


>gi|317052206|ref|YP_004113322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
 gi|316947290|gb|ADU66766.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
          Length = 464

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 147/473 (31%), Positives = 217/473 (45%), Gaps = 32/473 (6%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA-IVVSSAYSLQ 80
           P    + + + +S D+R I    +F+AI G++ D HL +P+ ++ G  A  +        
Sbjct: 13  PHPQVDVEFSRLSRDTRDISPDCLFIAIAGSQFDPHLHLPELLSSGKIAGALCQHPVDGP 72

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQ 138
           +           LV+ +  +  +  A   YG       ++ VTGT+GKSS  S+++Q+ Q
Sbjct: 73  NT----------LVLPDLAEREATIAVAAYGNPSAALKVVGVTGTNGKSSTISYLRQVYQ 122

Query: 139 RSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             G  +  IG          + +   TTP    L   L       V +V +E SSH +  
Sbjct: 123 ALGHRTATIGTLGYAIDGGPSAELANTTPCATTLQHILHLCLQHHVEYVFMEVSSHAIAL 182

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+ GI+     FTNL  DH+D+H T   Y   K       L   +PA  YA     +  
Sbjct: 183 GRVQGIRFHGAIFTNLTPDHLDFHGTMDDYLQTK-------LRLFTPAPPYAIIHTRRIP 235

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K     G      G        ++  +        I    +   +  PL G   + N  
Sbjct: 236 RKLPPLPGVLSFGPGEDADIPTTEQQVSPEG-----IRFCLQGQIYRSPLRGRGNLENVQ 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             A  C   G +   V   +  L  + GRF  +  +  G    +DYAHT ++LE +LK+ 
Sbjct: 291 AVAAFCHHEGQERQQVARAIAALRPIEGRF--MPISHNGRHGIIDYAHTPDALEQLLKST 348

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R I  GR+IVVFGCGGDRD+ KRP+MG IA +LADI IVTDDNPR+EDP+ I ++II  +
Sbjct: 349 REICHGRLIVVFGCGGDRDKTKRPLMGAIASELADICIVTDDNPRTEDPQHIISQIIAAM 408

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     R+ AI  A E+ N  D++V+AGKGHE   I    +K    D +
Sbjct: 409 DMGRTTVIHERLRAITCARELANGDDLVVIAGKGHEKYQIYGR-QKHRFCDAE 460


>gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
 gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
          Length = 477

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 139/500 (27%), Positives = 222/500 (44%), Gaps = 35/500 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++ K          I   +  + +I  V++DSR I+   +FVAI G + DGH FI
Sbjct: 1   MNLTDILDKIDY-------IDYTKNNDDEITNVTNDSRKIEKDGVFVAISGMEFDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AIA GA  IVV+   +  D       +   + V + R  L+  ++ +     +   ++
Sbjct: 54  DKAIANGANTIVVTEDVTEID-------DINYIKVKDARIALAQISNVVCDFPSKKLRVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ +S +  I +        IG   T       +   TTP    + K L   
Sbjct: 107 GVTGTNGKTTTSSMISHILEHLDSPCTNIGTNGTFIGGKKYETPNTTPEICEINKILKLS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  VE SSHGL  HRLDGI        NL  +H+D+H+  + YF+AK      +
Sbjct: 167 VEEKIDNAVVECSSHGLYLHRLDGIDFDVAVLNNLSMEHMDFHKNMENYFDAK-----MI 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + +   I   D       K                      ++          +  E 
Sbjct: 222 LFENAKKKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELI------DGKMHFEI 275

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+  F+      F VYN++ A      +G +   + + LE    V  RFEFV  N  G  
Sbjct: 276 KNVKFVLNRFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NDMGIN 334

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +D+AHT  + E I K++      R I V+G  GDR    R  +GKI+ +    ++VT 
Sbjct: 335 IVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTSEIRHEVGKISAENNVFSVVTT 392

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P+ +  E I  +I+ GI      ++   +R  AI+ AIE+ NK D +++ GKG E   
Sbjct: 393 DDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEIANKGDFVLLLGKGQENFI 452

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            +   EK    + + + E+L
Sbjct: 453 KLKGNEKTPYSEKETVNEVL 472


>gi|291521921|emb|CBK80214.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 507

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 145/517 (28%), Positives = 230/517 (44%), Gaps = 38/517 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L  +    L            +  I  ++  S+ +    +F+ I G ++DGH +I
Sbjct: 1   MILKALFERIPAVLCQGSW-------DTDIASIAMCSKEVTNNSLFICIKGMEQDGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQD-----------------FSATIRSNTPILVVDNTRKFLS 103
            +A  +GA A +V  A+  +                      +     I+ V NTR+  +
Sbjct: 54  QEAAERGAAACLVEEAFWKKSASVHGNLKQAEKKTSAYGELKLPEQMTIVSVQNTREAAA 113

Query: 104 LFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDN 160
             A+  Y    +   ++ +TGT GK+S    ++ I + +G  +  +G     I    +  
Sbjct: 114 WAAAAFYRYPSKELKVIGITGTKGKTSTTFMIRDILEAAGYKTGLLGTIDYEIGEEKKRA 173

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TTP  I + + L  ++  G     +E SS GL  HR D I    G FTNLGRDHI   
Sbjct: 174 ERTTPEAIDIQRYLRKMADSGCRFAVMEVSSQGLKLHRSDSILFDVGVFTNLGRDHIGPK 233

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           + +     A  +       K    I   DD Y +E+ K A    C               
Sbjct: 234 EHKDMAEYAHYKSLLF--QKCCFGIGNIDDPYYREIFKDASCQVCTYSCRQKADVQASDI 291

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +   + +      V G+++    P  GEF VYNA+ A  +C   GID  ++ + L+ + 
Sbjct: 292 MLVNRNGQLGTFFKVNGEEYAVSAP--GEFSVYNAVAAITVCRHYGIDQEIIRKALKTIR 349

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           V PGR E +  N RG  + +DYAH + SL+ IL+ +R     ++ V+FGCGG R   +R 
Sbjct: 350 V-PGRVEVI-DNDRGYLLLIDYAHNAMSLKNILETMRRYHPRQLWVLFGCGGGRSAARRR 407

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEML 456
            MG +A   AD  ++T DNPR E+PE+I   I  G+      +    +R EA+R  +   
Sbjct: 408 EMGCVAGKYADFTVITSDNPRYEEPERIMQTIEEGMKETKGQYQMMVDRKEAMRFMLAQG 467

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D+L++AGKGHE    +  G+     +  I +EIL
Sbjct: 468 RPGDILILAGKGHEQYQEIK-GDYLPFNERKIAQEIL 503


>gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis CO72]
          Length = 520

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 144/483 (29%), Positives = 230/483 (47%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDG-------HLFIPQAIAQGAEAIVVSSAYSLQD 81
           + ++   DSR I A   FV +  + +D        + ++       A  ++     +  D
Sbjct: 40  QFDQFCLDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDS-AAFVISELDLAGLD 98

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQIC 137
                    PI+ V N R +L    +     H       I+AVTGT+GK++V+  + Q+C
Sbjct: 99  LDDI---QIPIISVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLC 155

Query: 138 QRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           Q SG+SS  +G            +  TT   +     +  ++ +GV  +++EASSHGLDQ
Sbjct: 156 QASGISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQ 215

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +RL G+ +I   +TNL RDH+DYH    +Y +AK +LF++ L       +   D      
Sbjct: 216 YRLQGVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALF 275

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A +      S        + K V    +  ++ +     +   + PL G F V N L
Sbjct: 276 DYEAADFRIIGYSQQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNVDNLL 335

Query: 317 VA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            + A         +A +   + +L    GR +    +S+ G   +DYAHT ++L+ +L +
Sbjct: 336 ASMAAFTALNPARAADLPNLITQLQGARGRMQRA--SSQTGAFIIDYAHTPDALKQVLSS 393

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R   +GR+I VFGCGGDRD+GKRP M +  L  AD  I+T DNPRSE P  I A++  G
Sbjct: 394 LRRHCTGRLIAVFGCGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAILADMQKG 453

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +        I + +R  AI  A++   K D++V+AGKGHET   +  G +    D  ++ 
Sbjct: 454 LSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKGHETYQEIQ-GVRYDFDDLAVLG 512

Query: 491 EIL 493
           E L
Sbjct: 513 EFL 515


>gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 155/506 (30%), Positives = 235/506 (46%), Gaps = 28/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+       +              +   V+ D+  +  G +F A+ G+   G   
Sbjct: 1   MKLSDLMAGQDHHALRGTPDR------TDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHA 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  A+A+GA A++V               +  +L V + RK  ++ ASR +G+    +  
Sbjct: 55  VAPAVARGAVAVLVDQQAPT---LPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172
           +A+TGT+GK+SV+   + + +         IG               + L+TP    L  
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQY 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK+R
Sbjct: 172 LLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF         A++ ADD     + K    A       G          +    +  + T
Sbjct: 232 LF---QGLCRRAVVNADDPVGAGIRKLMPGAVTTYALDGDADY--RASDLTVDASGSRFT 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+ +    P PG F V NAL     C  +G   A ++  LE++  +PGRFE +  +
Sbjct: 287 LHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQIS 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   +D+
Sbjct: 347 G-GTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRADMGAIAGTHSDV 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      D++++AGKG
Sbjct: 406 CVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAGKG 465

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            E    V  GE     D   +RE++G
Sbjct: 466 SEPHQSV-RGELLPFSDMATVRELIG 490


>gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
 gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
          Length = 482

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 130/498 (26%), Positives = 214/498 (42%), Gaps = 37/498 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIA 65
           P L    ++F  +  E  +  ++ DSR ++ G++FVA+ G         DGH F+P+A+A
Sbjct: 2   PTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEALA 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGT 123
           +GA A+V     +L           P L V + R+ L+L A R +G+    +L   VTG+
Sbjct: 62  RGAVAVVGEKPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTGS 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GKS+ AS +  + +R+   S  +          +       TTP    +   L   + +
Sbjct: 113 KGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAADR 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+    +E SSH L   R++G+    G F N   D    H        A  R    L+ +
Sbjct: 173 GLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDD---HLDFHGTAEAYFRAKALLVER 229

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++     +   + ++ H +          G  ++ + +          +       
Sbjct: 230 SDLAVLARSLPHFPRLAQKPHLSFGE-------GGEVYAEGLRETPEGLAFRLHTPWGSG 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G + + NAL A+   +A+G+    VLE L     VPGR E V       R+ +
Sbjct: 283 EAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVV--LKAPFRVVI 340

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT  SLE  LK +R  T GR+++V G  G+RD  +R  +G++A  LAD    T+++ 
Sbjct: 341 DFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFFTEEDH 400

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R ED   I   +          +    +R EAI  AI      D +++AGKGHE      
Sbjct: 401 RGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVLLAGKGHEATLE-R 459

Query: 477 NGEKKMSVDCDIIREILG 494
                   + +   + L 
Sbjct: 460 GQVALPWNEREAALKALR 477


>gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
 gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
          Length = 482

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 131/498 (26%), Positives = 214/498 (42%), Gaps = 37/498 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIA 65
           P L    ++F  +  E  +  ++ DSR ++ G++FVA+ G         DGH F+P+A+A
Sbjct: 2   PTLKELFALFGKEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFVPEALA 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGT 123
           +GA A+V     +L           P L V + R+ L+L A R +G+    +L   VTG+
Sbjct: 62  RGAVAVVGERPLALP---------VPYLQVADGRQALALLARRFHGEPDRKLLLVGVTGS 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GKS+ AS +  + +R+   S  +          +       TTP    +   L   + +
Sbjct: 113 KGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAADR 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+    +E SSH L   R++G+    G F N   D    H        A  R    L+ +
Sbjct: 173 GLKSAVLEVSSHALALKRVEGLTFRVGVFVNFYPDD---HLDFHGTAEAYFRAKALLVER 229

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++     +   + +R H +          G  ++ + +          +       
Sbjct: 230 SDLAVLARSLPHFPRLAQRPHLSFGE-------GGEVYAEGLRETPEGLAFRLHTPWGSG 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G + + NAL A+   +A+G+    VLE L     VPGR E V       R+ +
Sbjct: 283 EAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGRMEVV--LKAPFRVVI 340

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT  SLE  LK +R  T GR+++V G  G+RD  +R  +G++A  LAD    T+++ 
Sbjct: 341 DFAHTGKSLEAALKTLRPTTPGRLLLVVGAAGERDPQRRVDIGRVAARLADKTFFTEEDH 400

Query: 421 RSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           R ED   I   +          +    +R EAI  AI      D +++AGKGHE      
Sbjct: 401 RGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVLLAGKGHEATLE-R 459

Query: 477 NGEKKMSVDCDIIREILG 494
                   + +   + L 
Sbjct: 460 GQVALPWNEREAALKALR 477


>gi|291563560|emb|CBL42376.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SS3/4]
          Length = 484

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 115/480 (23%), Positives = 197/480 (41%), Gaps = 23/480 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ ++EV  DSR  +   +FV I G+  D H FIP  +  G           + +    +
Sbjct: 11  DQNVDEVIYDSRKARPDSVFVCIQGSTRDSHEFIPDVLRAGC-------KVLVVEKEVEV 63

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
            ++  ++ V++ R  L+  ++  +G   E    + +TGT GK++ +  ++ + + +G  +
Sbjct: 64  PADVTVIRVESGRLALAELSAARFGYPAEKLITIGITGTKGKTTTSYMIKAVLEAAGKKT 123

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG     I         TTP    +      +   G     +E SS  L  HR+ GI 
Sbjct: 124 GLIGTNGAVIGDVKFPTSNTTPESYVVQDYFHKMVEAGCECCVMEVSSQALMLHRVGGIM 183

Query: 204 LIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
              G FTN+  DH     H++ + Y   K RL           +    D   K+   R  
Sbjct: 184 FDYGLFTNISPDHIGPKEHKSFEEYLFYKSRLLTVCKTGIVNRLTDHYDEVVKDATCRLL 243

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  +        +      +  +  +   ++G+    +           AL    L
Sbjct: 244 TYALNGNADFMGDDIHYASNHDFVGIEFSIHGMLDGRVRVGMPGKFNADNALAALAVCTL 303

Query: 322 CIAIGIDSALVLEHLEKL-----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            ++ G            L       V GR E    +     + VDYAH + S+E +L  +
Sbjct: 304 ALSGGSGVLDDHTKQAILGSLVKVRVDGRMEIAHVSK-KCSVIVDYAHNAVSMESLLTTL 362

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R     R++ VFGCGG+R + +R  MG+I   +AD+ I+T DNPR E  E I  +I  G+
Sbjct: 363 RDYHPKRLVCVFGCGGNRARDRRYSMGEIGGKMADLCIITADNPRFEKNEDIIKDIEVGL 422

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 ++   +R EAI  AI    + D++ + GKGHE    +  G K   +D +++ E 
Sbjct: 423 AKTDGTYLVIPDRQEAIFYAIRNAEEGDMIAIIGKGHEDYQEIE-GVKHHFLDREVVEEA 481


>gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 517

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 142/478 (29%), Positives = 221/478 (46%), Gaps = 18/478 (3%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +++  + SDSR I  G  F+A  G   DG   +  AIA+GA A +V  A           
Sbjct: 31  RVSGSLHSDSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQAGVAAFAFPAAP 90

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ--RSGLS 143
             + +  +   +      A++ + +      +LAVTGT+GK+S A ++            
Sbjct: 91  GAS-LASLPGLKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWLADALNGRAKSPV 149

Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
               G          +   +TTP P+ L +AL     +G++  ++EASS GL+Q RL G 
Sbjct: 150 CALAGTLGLGVPPVLETAGMTTPDPLRLQRALRQFVDRGLSACAIEASSIGLEQGRLAGT 209

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           ++ A  FTN  +DH+DYH +  AY+ AK  LF+   P    A+I  DD    ++      
Sbjct: 210 QIRAAIFTNCTQDHLDYHGSMAAYWRAKRALFDW--PGLQAAVINIDDPAGAQLHAELAG 267

Query: 263 AGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               + S+  QG      + +       + T+            + G + + N L     
Sbjct: 268 RVPDLWSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGHYNLQNLLAVLAT 327

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379
             ++G   A  L+    L  VPGR + +    +   + VDYAHT ++L   L+ +R +  
Sbjct: 328 LRSLGWPLAEALQAGAGLQPVPGRMQQLALAGQPL-VVVDYAHTPDALAKALQALRPLAA 386

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             +GR+  VFGCGGDRD GKRP+MG  A   AD  ++T DNPRSEDP+ I  +I+ GI  
Sbjct: 387 RRAGRLWCVFGCGGDRDAGKRPLMGAAAEQQADRLLLTSDNPRSEDPDAILRQILQGISR 446

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 + +R  AI  A+      DVL++AGKGHE    V  G ++   D    +  +
Sbjct: 447 RRAVRTEPDRAAAIAQAVAEAAPADVLLIAGKGHEDSQEVA-GVRRPFSDWAHAQRAM 503


>gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20]
          Length = 528

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 148/477 (31%), Positives = 224/477 (46%), Gaps = 21/477 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DS    AG +FV + G    G  F  QA+A GA A++  +  +           TP
Sbjct: 49  GVSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVAVLTDADGAQIVHET--APGTP 106

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +LV D+ R  +   ++ +Y      ++  AVTGT+GK++ A F+  I           G 
Sbjct: 107 VLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGT 166

Query: 150 TS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               +   + ++  TT     L + ++      V   S+EASSH +  HRLDG+ +    
Sbjct: 167 VELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGLVVDVAG 226

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-- 266
           FTNL RDH+D+H+T + Y  AK +LF     +        DD +   +   A     R  
Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKAQLFTPEHARRGVV--CVDDQWGAALAAEAPIEIDRVR 284

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324
                     ++    V    +    T+     +  +   PLPG   V NA +A  + I 
Sbjct: 285 AYPGDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIR 344

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGR 383
            G+ +A     L   H +PGR + +           VD+AHT  ++E+ LK +R IT GR
Sbjct: 345 AGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELALKAVRPITPGR 404

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           +IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP+ IR  I+ G+       
Sbjct: 405 LIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEGVRGVRPDL 464

Query: 437 PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               E    R +A+R  +E+    D ++V GKGHE    +  GE     D  ++ E 
Sbjct: 465 TDVEEITTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMA-GEFIRYNDAPVMAEA 520


>gi|172040890|ref|YP_001800604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852194|emb|CAQ05170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 533

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 141/501 (28%), Positives = 235/501 (46%), Gaps = 35/501 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                  ++  ++  +  S  +Q G +F A+ G++  G  F       GA A++  +  +
Sbjct: 28  GTVAATHQDVTVDSAAIGSADVQPGGLFCAVPGSRVHGATFAAD---SGAAAVLTDAEGA 84

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQIC 137
                    ++ P+LVVD+ R+++   A+ +YG    +  +     +   +  +++ +  
Sbjct: 85  ----EILADADLPLLVVDDVRRWMGPVAAAVYGHPSRDLRIIGITGTSGKTTTTYLIERA 140

Query: 138 QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +  S   IG T T  +      +LTTP    +   L+ +  +GVTHV +E SSH L  
Sbjct: 141 LMAKHSVGIIGTTGTRINGEQIPTKLTTPEAPTMQALLAQMRDRGVTHVVMEVSSHALAL 200

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE---SPAIIYADDAYS 253
            R+ GI      FTNL +DH+D+H T + YF  K +LF +   +      A++  DD + 
Sbjct: 201 GRVTGIDFDVAGFTNLSQDHLDFHPTMEDYFETKAQLFLQAQAEGAELPAAVVCVDDDWG 260

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN----KQQVTISVEGKDFDFLFPLPGE 309
           + +     ++G + L+VG   +     +V  +H     +Q++T++ EG++F +   L G 
Sbjct: 261 QRLAGMIADSGLQALTVGTTKQSGADWQVTDVHVTPAGRQEITVATEGEEFSYDIGLVGS 320

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N+L+A      +G D       +  + V PGR + V          VDYAH   ++
Sbjct: 321 FNVANSLLAISCVTQLGEDPQAAAAAIADVQV-PGRMQAVDAGQ-PFLAVVDYAHKPGAV 378

Query: 370 EMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +++ +       +GRI +V G GG+RD  KRP+MG+ A  +AD   VTDDNPR E+P 
Sbjct: 379 AAVVRTLSDYLPSPTGRIGIVLGAGGNRDHDKRPMMGEEAAKVADAVFVTDDNPRDEEPA 438

Query: 427 KIRAEIIHGIPGFIE-------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            IR+ I+ G+    E                R +AIR A+      D +VVAGKGHET  
Sbjct: 439 PIRSMILDGVRKAAEAREANGEKVFYDDVPGRADAIRAAVAWARPGDAIVVAGKGHETGQ 498

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            V  GE     D + +   L 
Sbjct: 499 EV-RGEIHPFADLEELAAALE 518


>gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 488

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 140/504 (27%), Positives = 216/504 (42%), Gaps = 33/504 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+  +                +  I+ +  DSR      +F  + G   DGH F 
Sbjct: 1   MKLNKLVNTEL---------------DCDIDHLVLDSRDRVKNGMFFCLKGLTVDGHQFA 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QA+  GA A+V S    + +           + VD+    L       Y     N+   
Sbjct: 46  KQAVENGAVAVVHSDDIDVIE-------GIVYIRVDDVMTELHRVTDVFYNSPSTNMYVY 98

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GKS+    V+ I +R G+++  IG  S   +       LTTP  + L   L  +
Sbjct: 99  GITGTNGKSTTMLTVRNILRRFGVNAGYIGTISVEYNEHKFAPSLTTPDIVELQSYLQDM 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GV  V +E SS GL   R++ I     SFTNL  DH+DYH+T + YF AK  LF+ L
Sbjct: 159 RLEGVEEVCLEVSSQGLALRRVESIDFDNASFTNLTHDHLDYHKTMENYFEAKKMLFDNL 218

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P     +    D    E+++    +      V         K +    +  + T+  EG
Sbjct: 219 KPSGFMVL--NIDNEYGEILQNQDYSNVVTYGVDNPKAHYRAKDIVLHEDFTEFTLIHEG 276

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K +  +      F VYN L    +    G     ++  L+ +  V GR + +    +  R
Sbjct: 277 KTYPVVTNFVAIFNVYNMLNVIAILHQRGYALEKIIPELKDIEHVDGR-QTMVNKGQPFR 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           + VD+ H  +S++ + + +R+      R+I VFG  G RD  KRPIMG++A    D  I+
Sbjct: 336 VIVDFGHAPDSMKNVYEFVRSTQDEGARLITVFGAAGGRDTAKRPIMGRVASMYCDHVII 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           T+ + R E    I  +II GI    +    NR +AI  A++M    D +V+ GKG E   
Sbjct: 396 TEHDNRDERVVDITQDIITGIESNNYEFVPNRTDAIEKALKMALPGDTVVLIGKGEEKFI 455

Query: 474 IVTNGEKK-MSVDCDIIREILGLI 496
               G K+    D      IL  +
Sbjct: 456 YREQGSKETWMGDEVCASLILDKL 479


>gi|116075053|ref|ZP_01472313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
 gi|116067250|gb|EAU73004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
          Length = 511

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 152/507 (29%), Positives = 226/507 (44%), Gaps = 18/507 (3%)

Query: 8   YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            +    L+  + +  P       I  ++ DSR    G +F+ + G + DG  F  Q +A 
Sbjct: 2   AQTLHSLLQAVGLPVPEGCPNPAITALTCDSRCASNGSLFLGLPGERVDGGSFWRQTLAD 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A V+ SA +L D  +       +             A   Y      ++ VTGT+GK
Sbjct: 62  GAAAAVIGSAAALADPPSPADPVVVVADPVADWAGALAAAFWQYPSRRMTLIGVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ IC + G S+   G   +     +  +  TT     L   L+   + G    
Sbjct: 122 TTTTHLIEHICDQIGRSAALFGTLVNRWPGHSITSTHTTAFADRLQAQLAEAVAGGTQVA 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--- 242
           ++E SSH LDQ R+ G +  A  FTNL +DH+DYH + QAYF AK RLF E L       
Sbjct: 182 AMEVSSHALDQGRVAGCQFSAAVFTNLTQDHLDYHPSMQAYFEAKARLFAEPLLMAEGEG 241

Query: 243 -PAIIYADDAYSKEVMKRAHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             A++  DD + +++  +      R          G  + +  +          I     
Sbjct: 242 ARAVVNVDDPWGQKLADQLGERCWRCSLEPERHPGGVELTMTDLTMTSAGVSGEIVTPAG 301

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  PL G F + N L A G+ +  G+  ALVL+       VPGR E V   S     
Sbjct: 302 RGAFQSPLVGAFNLMNLLEAVGVLVQQGMPLALVLQAAACFKGVPGRMERVMLGSDQAMA 361

Query: 359 Y-----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                 VDYAHT + L   L   R    G ++ VFGCGGDRD+GKRP M  +A +L+D  
Sbjct: 362 DLPSVLVDYAHTPDGLRNALLASRPFVKGDLVCVFGCGGDRDRGKRPQMAAVAAELSDRV 421

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DNPR+EDP++I  +++ GIP     +   +R  AI   I      D++++AGKGHE
Sbjct: 422 VVTSDNPRTEDPQQILDDVVAGIPAEASLVVDVDRASAIADVIAEAGADDLVLIAGKGHE 481

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLIL 497
              I+    K    D +     L   +
Sbjct: 482 DYQILGT-TKIHFDDREQAEIALRKRV 507


>gi|260434604|ref|ZP_05788574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
 gi|260412478|gb|EEX05774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
          Length = 497

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 142/496 (28%), Positives = 231/496 (46%), Gaps = 16/496 (3%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L +     P       +  +++DSR +  G +F+ + G + DG  F  QA+         
Sbjct: 5   LRDAGIAVPPGLVNPGLEAITTDSRRVGPGTLFLGLPGERVDGGSFWAQALE---AGAAA 61

Query: 74  SSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
           +   +    +    ++ P++V+ ++  + +   ++  +      +  + VTGT+GK++  
Sbjct: 62  AVIGAAAAAAKPPAADDPVVVIQESVARRIGELSAAYWDHPCRRMVLIGVTGTNGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ +   +G S    G   +     +     TT     L   L+  +S G    ++E 
Sbjct: 122 HLIEHLAASTGQSVGLFGTLVNRWPGHSITATHTTAFADRLQGQLAEAASAGCCLAAMEV 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYA 248
           SSH L Q R+ G +     FTNL +DH+DYH + + YF AK  LF + L   +    +  
Sbjct: 182 SSHALAQQRVAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGVRSVVN 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D      +     A C   S+      +H+  +       +  +     +  F  PL G
Sbjct: 242 SDDPWGARLAERLGAACWRSSLEDPSAELHMSDLQMTAAGVEGRLISPAGEGRFRSPLLG 301

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAH 364
            F + N L A G+ +   +   ++LE + +   VPGR E V  N         + VDYAH
Sbjct: 302 RFNLMNLLQAVGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAVNLPPVLVDYAH 361

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T + L+  L   R   +GR+I VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+ED
Sbjct: 362 TPDGLDNALSAARPFCTGRLICVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTED 421

Query: 425 PEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P++I  +++ GIP     + +G+R +AI +AI      D+++VAGKGHE   I+   EK 
Sbjct: 422 PQRILDDVVAGIPAGSDLLVEGDRAKAIASAIAEAEPDDLVLVAGKGHEDYQILGT-EKV 480

Query: 482 MSVDCDIIREILGLIL 497
              D +     L L L
Sbjct: 481 HFDDREEAERALRLRL 496


>gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
 gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
          Length = 511

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 148/485 (30%), Positives = 230/485 (47%), Gaps = 34/485 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  V  DSR    G +FVA+VG+  DGH            A   ++  +       + +
Sbjct: 23  ELTGVCCDSRQAGPGMVFVAVVGHSADGHA---------YVAAAAAAGATAAVVQRPVEA 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   +VV ++R  LS  A    G+  +   ++ VTGT+GK+++    + I  +   +   
Sbjct: 74  DIAQIVVPDSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTICHLARAIMAQRWPTGMI 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +  +   +   +TTP  + L K L+ + + GV   ++E SSH LDQHR D  +   
Sbjct: 134 GTVETCFAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSSHALDQHRADHCRFDV 193

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK------ESPAIIYADDAYSKEVMKRA 260
           G FTNL RDH+DYH     YF AK  LF ELLP          ++I  DD + + +  +A
Sbjct: 194 GLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSVICLDDDHGRVLADQA 253

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              G  +L+ G         +V A       V I   G   +F   L G + + N + AA
Sbjct: 254 RGTGLALLTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSLEFHSRLVGRYNLQNIVGAA 313

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +A+G+    +   LE +  VPGR + V    R   ++VDYAH+  ++   L  +R +
Sbjct: 314 AVGLALGLSPEEIKAGLEGVAGVPGRLQRVPGPDRSPAVFVDYAHSPEAIAAALAVLRPL 373

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            +GR+I VFG GGDRD+GKRP+MG+ A   AD  ++T DNPR+EDP  I   +  G+   
Sbjct: 374 CAGRLICVFGAGGDRDKGKRPLMGRAAGQAADFCVLTSDNPRTEDPMAIIDMVEAGLVES 433

Query: 438 GFIEKGN-----RIEAIR--------TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
                 N     R  A+          AI+     DV+++AGKGHE   I+    K+   
Sbjct: 434 EARRCDNPAAGQRAYAVEADRAAAIAMAIQAAGPADVVLIAGKGHEDYQIIGR-VKRHFD 492

Query: 485 DCDII 489
           D +  
Sbjct: 493 DREQA 497


>gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 538

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 143/503 (28%), Positives = 223/503 (44%), Gaps = 26/503 (5%)

Query: 11  FPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             EL +QL +       E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA 
Sbjct: 17  LAELADQLGVDASGVPAEAAVTGITHDSRAVRPGDVYAALSGARLHGADFAAQAADLGAA 76

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A++     + +       +  P+LVVDN R  +   A+ +Y +  H    + +TGTSGK+
Sbjct: 77  AVLTDPDGAER----AAATGLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGKT 132

Query: 128 SVASFVQ-----QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           + A  V         + +G  +  IG            +  TTP    L    + +  + 
Sbjct: 133 TTAYLVDGGLRAAAEKAAGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERD 192

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V +E SSH L   R+DG       F NL  +H+++H   + YF AK +LF +   + 
Sbjct: 193 VHSVVMEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRA 252

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDF 300
                  DD Y + +++ +        + G+         V         T I   G+  
Sbjct: 253 GVINY--DDEYGRRLIEESEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAIGPNGETV 310

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G F V NAL A       GID     + +  +  VPGR E V          V
Sbjct: 311 RAAAPIAGPFNVANALAALVALAVAGIDPQTAADGIGAVPGVPGRLERVDVGQ-PYLAVV 369

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAH ++++E +L+ +R +T G++  V GCGGDRD+ KR  MG      AD A++T DNP
Sbjct: 370 DYAHKTDAVESVLRALRKVTDGKLHAVLGCGGDRDRLKRGPMGSAVARYADTAVLTSDNP 429

Query: 421 RSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           RSEDP  I A ++ G            + + +R  AI  A+      D ++VAGKGHE  
Sbjct: 430 RSEDPLAILAAMLAGAAEVPSHERGDVLVEEDRENAIAAAVARAEPGDTVIVAGKGHEQG 489

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
             +  G  +   D  ++RE + L
Sbjct: 490 QDIA-GVIRAFDDRQVLREAIEL 511


>gi|254564002|ref|YP_003071097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
 gi|254271280|emb|CAX27292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
          Length = 492

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 203/474 (42%), Positives = 270/474 (56%), Gaps = 19/474 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF          A   ++         T  
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           ++ P     + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI  R G  
Sbjct: 76  ADLPEATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRD 135

Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G    +++       LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+
Sbjct: 136 SASLGTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGV 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +L A +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  
Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADA 255

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAA 319
           AG  + + G  G FI L +       Q +T+S   KD+    P            A   A
Sbjct: 256 AGHAIRTTGRGGDFIRLIEAGTEGFAQSLTLSHASKDYHVRLPLVGGFQVENALVAAGLA 315

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A   D A V   LE L  VPGR E +G  + G    VDYAH   +LE +L  +R  
Sbjct: 316 LATQAGQADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYAHKPEALEHVLSALRPF 374

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            SGR++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG 
Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            E G+R EAIR  +  L   DVLVVAGKGHET  IV         D D +R  +
Sbjct: 435 EEIGDRAEAIRAGVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAI 487


>gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
 gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
          Length = 478

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 142/500 (28%), Positives = 223/500 (44%), Gaps = 35/500 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++ K          I   +  + +I  V++DSR I+ G +FVAI G + DGH FI
Sbjct: 1   MNLTDILDKIDY-------IDYTKNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AIA G   IVV+   S  +           + V + R  L+  ++ +     +   ++
Sbjct: 54  DKAIANGTNTIVVTEDVSQNE-------GINYIKVKDARIALAQISNVVCDFPSKKLRVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ AS +  I +        IG   T  +    +   TTP    + K L   
Sbjct: 107 GVTGTNGKTTTASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLS 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  VE SSHGL  HRLDGI      F NL  +H+D+H+  + YF+AK      +
Sbjct: 167 VEKKIDNAVVECSSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAK-----MI 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L + +   I   D       K                      ++          +  E 
Sbjct: 222 LFENAKKKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELI------DGKMHFEI 275

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+  F+      F VYNA+ A      +G +   + + LE    V  RFEFV  N  G  
Sbjct: 276 KNVKFVLNRFALFDVYNAVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVK-NDMGIN 334

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I +D+AHT  + E I K++      R I V+G  GDR +  R  +GKI+ +    ++VT 
Sbjct: 335 IVIDFAHTPKAFENIYKSVPN--DKRKIAVYGMSGDRTREIRHEVGKISAENNVFSVVTT 392

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P+ +  E I  +I+ GI      ++   +R  AI+ AIEM N  D +++ GKG E   
Sbjct: 393 DDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEMANDGDFVLLLGKGQENFI 452

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            +   EK    + + + E+L
Sbjct: 453 KLKGNEKTPYSEKETVNEVL 472


>gi|183221146|ref|YP_001839142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911237|ref|YP_001962792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775913|gb|ABZ94214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779568|gb|ABZ97866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 508

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 150/515 (29%), Positives = 238/515 (46%), Gaps = 36/515 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL-- 58
           MKL ++I K  PEL            +  +  + +DSR ++   +FV +    ED     
Sbjct: 1   MKLTEIIKK-IPELK-----LIKGDGDLDVGYIWADSRKLKPNDVFV-LP---EDKAETI 50

Query: 59  --FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPE 115
             ++  A  +G + ++VS                 IL  ++         AS+L G   +
Sbjct: 51  ESYLQMAYDKGVKVVLVSKRNLKLKNLDLFP---TILESEDALGDVHGKMASQLLGNPSK 107

Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAK 172
              I+ +TGT+GK+S+   +  I ++       IG           ++  TTP    L  
Sbjct: 108 KLKIIGITGTNGKTSLTFILFHIAKKLKKKVALIGTVQIQILDRILESGYTTPDASSLNL 167

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +  +GV +V +E SSHGL   R+ GI++    FTNL +DH+D+H++ + YF +K +
Sbjct: 168 LLREMLDEGVEYVFMEISSHGLKLGRVAGIEITCAGFTNLTQDHLDFHESMEDYFESKFK 227

Query: 233 LFE---ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
           +F+   +   K    ++  D ++   +++R   +  +       +    H          
Sbjct: 228 IFQLLEQSSVKNKFGLVAGDVSFGDRMIQRIRESKLKTPIYILGKSGEFHYSNTKLSLLG 287

Query: 289 QQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +     + K+  F         L G F V+N   A  +   +G     V+  +E++  V
Sbjct: 288 SEYRFHKKEKNLPFIEVRSIRTNLLGNFNVFNTAFAMSIAYELGFPWDEVVTAIEEIPTV 347

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGRF+ +    +     VDYAHT ++LE ILK+   I   ++I +FGCGGDRD+ KRP M
Sbjct: 348 PGRFQVIPYPDKTRIAVVDYAHTPDALENILKSCVEIRPKQLICLFGCGGDRDRTKRPQM 407

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNK 458
            KIA  LAD   +T DNPR+EDPE I  EI  G       + +  +R  AI+ A+ +L K
Sbjct: 408 AKIAETLADFVFLTSDNPRTEDPESILDEIESGFSRGFKRYEKITDRRVAIQRAVSLLEK 467

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +LVVAGKGHET  I+   EK   VD   I    
Sbjct: 468 DGILVVAGKGHETYQIIG-KEKTNFVDFLEIENAF 501


>gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
 gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
          Length = 498

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 130/512 (25%), Positives = 219/512 (42%), Gaps = 32/512 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + ++I     ++       P       +N +S DSR I  G +FVAI G   DGH +I
Sbjct: 1   MNILEVINN--IKIKTIYGKLPKS-----VNNISQDSRKIGEGDVFVAIKGYTVDGHNYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENIL 118
            + I QGA  ++ S       +      N  ++VV      K  S+ A  +      + +
Sbjct: 54  GKVIEQGAALVIASR------YEDYNIENCAVIVVKEHEIEKIASMIAKAINHGPAVHTV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSY 176
           AVTGT+GK+S+++ V  + +    SS  IG      +  +      TTP  + L   +  
Sbjct: 108 AVTGTNGKTSISTLVHNMLRNLDESSAFIGTNGFGKNDNEPVYFGNTTPDVVTLHNKIGE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLF 234
           L  + + +++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y    + +   
Sbjct: 168 LRRENIKNLAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFST 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQ 290
                 E+   +   D     +M +         SV  +    +   +         K Q
Sbjct: 228 LGNNFSEAKYGVLNKDDDYYGIMSKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQ 287

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T++     F+      G+F V N L A       G     ++  L  L  + GR E +G
Sbjct: 288 FTLNSPEGTFECTTNYIGDFMVSNVLAAMIAVWVKGYSVEKLVSILPSLGALYGRMEILG 347

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409
                  I  D+AHT +  + +L+  R I  G+  ++    GG RD  K P++G+I  + 
Sbjct: 348 DG-LPIDIISDFAHTPDGYKKLLEATREIRKGKRTLLLTGMGGGRDISKGPLIGEIISE- 405

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  I+T D+PR ED E +   I  G+    + +   R +A++  IE+    DV+++A K
Sbjct: 406 ADYVIITTDSPRDEDVEVLMGAIEKGMTHKNYEKVWFRTDAVKRVIELAEPGDVVILASK 465

Query: 468 GHETVHIVTNGEKKMSVD----CDIIREILGL 495
           G E   I+  G+K    D     D  ++  G+
Sbjct: 466 GREDYEILKGGKKVWHSDPIIAVDEAKKKFGI 497


>gi|78212334|ref|YP_381113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9605]
 gi|78196793|gb|ABB34558.1| UDP-N-acetylmuramyl-tripeptide synthetases [Synechococcus sp.
           CC9605]
          Length = 501

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 145/504 (28%), Positives = 230/504 (45%), Gaps = 16/504 (3%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +       L +     P       +  +++DSR +  G +F+ + G + DG  F  QA+ 
Sbjct: 1   MTQALHALLSDAGIAVPPGLVNPGLGAITTDSRRVGPGTLFLGLPGERVDGGTFWAQALE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTG 122
                   +   +    +    ++ P++V+     + +   A+  +      +  + VTG
Sbjct: 61  ---AGAAAAVIGAEAAAAQPPGADAPVVVIQEPVARRIGEIAAAFWDHPCRCMALIGVTG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK++    ++ +   +G S    G   +     +     TT     L   L+  +S G
Sbjct: 118 TNGKTTTTHLIEHLAASAGQSVGLFGTLVNRWPGQSITATHTTAFADLLQGQLAEAASAG 177

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               ++E SSH L Q R+ G +     FTNL +DH+DYH + + YF AK  LF + L   
Sbjct: 178 CGLAAMEVSSHALAQQRVAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLA 237

Query: 242 SPAIIY-ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             A      D    E +     A C   S+      +H+  +       +  +     + 
Sbjct: 238 DGARSVVNSDDPWGERLAERLGAACWRSSLEDPSAELHMSDLQMTAAGVEGRLISPVGEG 297

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----G 356
            F  PL G F + N L A G+ +   +   ++LE + +   VPGR E V  N        
Sbjct: 298 RFRSPLLGRFNLMNLLQAIGVLLQQQLPLPVLLEAIGRFGGVPGRMERVILNGVDAANLP 357

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT + L+  L   R   +GR+I VFGCGGDRD+GKRP M +IA  LAD  +VT
Sbjct: 358 PVLVDYAHTPDGLDNALSAARPFCAGRLICVFGCGGDRDRGKRPQMAEIAARLADRVVVT 417

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            DNPR+EDP +I  +++ GIP     + +G+R +AI +AI      D+++VAGKGHE   
Sbjct: 418 SDNPRTEDPRQILDDVVAGIPPGSDLLVEGDRAQAIASAIAEAEPNDLVLVAGKGHEDYQ 477

Query: 474 IVTNGEKKMSVDCDIIREILGLIL 497
           I+   EK    D +     L L L
Sbjct: 478 ILGT-EKVHFDDREEAERALRLRL 500


>gi|116329173|ref|YP_798893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330219|ref|YP_799937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282018|sp|Q04V91|MURE_LEPBJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122283045|sp|Q04Y85|MURE_LEPBL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116121917|gb|ABJ79960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123908|gb|ABJ75179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 500

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 162/509 (31%), Positives = 239/509 (46%), Gaps = 26/509 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNKEDGH 57
           MKL +L++ +FPEL               I  + SDSR      IF  +    G K+   
Sbjct: 3   MKLTNLLH-EFPELKLGSLPSGKNPDSVPIEYIQSDSRKTNPEDIF-CVPESIGTKK--G 58

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            FI       A  I++  + ++   S+ I         ++  +     AS L G   +  
Sbjct: 59  EFIS---NTKASVILLHRSSNISIDSSKIVLECE----EDPEQLQGRIASFLLGHPSKTL 111

Query: 117 -ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174
            I+AVTGT+GK+S+ + +  + +  G     IG         + D   TTP    L   L
Sbjct: 112 EIVAVTGTNGKTSLTNILFALAKDQGKICGLIGTIGVKFGDRSIDTGYTTPDASSLNLIL 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +  +GVT V +EASSHGL   R+ GI L AG FTNL +DH+D+H   + YF +K RLF
Sbjct: 172 KQMKDEGVTTVFMEASSHGLKLGRIGGISLKAGVFTNLTQDHLDFHSDMEDYFESKFRLF 231

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E L   +SP  +    +     + R        L +          KV       Q T  
Sbjct: 232 EILDVSKSPFAVLDYSSPGGNELHRKIRNNLPDLPIKALDGIGGEYKVSNPFLTLQGTSY 291

Query: 295 ----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                  +       L G F V N  +A    + +G+D   +   L+++  +PGRF+ V 
Sbjct: 292 VLSLPGNRSQTISTNLLGSFNVRNTALAFLTGLGLGLDPKGMFSSLKEIPQIPGRFQIVY 351

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +  R     VDYAHT ++LE I++++R     R+I +FGCGGDRD+ KRP M +IA +L+
Sbjct: 352 SKDRSRMAVVDYAHTPDALENIIRSVRNSRPKRLITLFGCGGDRDKTKRPKMARIAEELS 411

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D  I+T DNPRSE PE I  EI  G        + + +R  AI   + +L +   L+VAG
Sbjct: 412 DQVILTSDNPRSEKPEAILDEIQSGFSPGFTPLLREVDRARAISEGVGILPEGGCLLVAG 471

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGL 495
           KGHE   I+   EK+   D + +R+  GL
Sbjct: 472 KGHEEYQIIG-KEKRHFSDVEEVRKAFGL 499


>gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 15998]
 gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 11379]
 gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
 gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
          Length = 491

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 154/506 (30%), Positives = 234/506 (46%), Gaps = 28/506 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL DL+       +              I   V+ D+  +  G +F A+ G+   G   
Sbjct: 1   MKLSDLMAGQDHHALRGTPDR------TDITAGVTFDADRVTPGSVFAAVPGHAAGGPHA 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  A+A+GA A++V               +   + V + RK  ++ ASR +G+    +  
Sbjct: 55  VAPAVARGAVAVLVDEQAP---PLPRALGDVCAVRVPDVRKAAAVMASRYFGEPGRAMDL 111

Query: 118 LAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172
           +A+TGT+GK+SV+   + + +         IG               + L+TP    L  
Sbjct: 112 IAITGTNGKTSVSYMTESVLRLAEQARVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQY 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L ++  +    V +EA+S GL  HRLD   +  G FTNL +DH+D H T + Y +AK+R
Sbjct: 172 LLGHMRDRACGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLR 231

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF         A++ ADD     + K    A       G          +    +  + T
Sbjct: 232 LF---QGLCRRAVVNADDPLGAGIRKLMAGAVTTYALDGDADY--RASDLTVDASGSRFT 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +G+ +    P PG F V NAL     C  +G   A +++ LE++  +PGRFE +   
Sbjct: 287 LHHDGRKYPAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERL-QI 345

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  + VDYAH+ +SL  +L  IR    GR+I VFGCGGDRD  KR  MG IA   +D+
Sbjct: 346 PGGTSVIVDYAHSPDSLNKVLTTIRGFARGRVITVFGCGGDRDTTKRAEMGAIAGTHSDL 405

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++T DNPR EDPE I  +I  GI      F    +R  AI  A+      D++++AGKG
Sbjct: 406 CVLTSDNPRYEDPEAILDQIAEGIASTGTPFERLTDRRPAIAAALAEAGPDDIVLIAGKG 465

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            E    +  GE     D   +RE++G
Sbjct: 466 SEPHQSI-RGELLPFSDMATVRELIG 490


>gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 529

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 143/509 (28%), Positives = 224/509 (44%), Gaps = 22/509 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L  ++                 W +   +I  V+  S   +  W+FVAI G  + G  F 
Sbjct: 19  LTSVLPGSAVRAAYGPDGAETAWADLGTRIAGVTVSSDDCEPQWLFVAIPGLSQHGIRFA 78

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
             A   GA A++  +A + +  S  +    P++VVD+ R  ++  A+ +YG    +   L
Sbjct: 79  RAAKEAGAVAVLTDAAGASRAVSEGL--GLPVVVVDDPRSHVAALAAAVYGHPARDLVTL 136

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++ +  ++         +   G   T     + +   TT     + + L+  
Sbjct: 137 AVTGTNGKTTTSYLMRAALAAVHPRAALCGTVETRVGPVSFEAERTTAESPVVQRFLALA 196

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E S+H L  HR+DG+     +FTNL  DH+DY+   + YFNAK  LF   
Sbjct: 197 RECGEGAAVIETSAHALSLHRVDGVVFDVAAFTNLQHDHLDYYGDMEGYFNAKALLFTP- 255

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---S 294
                 A++  DD + + +   A      V ++        ++      +  +       
Sbjct: 256 -EHAKRAVVCVDDEWGRRLAASAPIPVTTVSALTDAPAHWRVRAAHPDPSIGRTVFTLVD 314

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G   +   P+ GE  V N  VA    +A G+     L  LE    +PGR E V     
Sbjct: 315 PDGTGHEVRMPILGEVNVQNTAVALVSAVAAGVPLDGALRALEAAPQIPGRMEKVNPVPG 374

Query: 355 GGR-IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT  +LE  L++ R +T+GR+ +VFG  GDRD  KR  +  IA   AD+ 
Sbjct: 375 NQPLVVVDYAHTPEALEWTLRSTRELTAGRLHIVFGTDGDRDASKREHLAGIAAAGADVL 434

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            VTD+NPR+EDP+ IR  ++ GI                R +A+R AI      D +++ 
Sbjct: 435 WVTDENPRTEDPQSIRDYLLRGIASQRPSMADVTEVVTCRRDAVRRAILAAQPGDTVIIT 494

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKG E    V  G K    D  + RE+L 
Sbjct: 495 GKGAEWYQEVE-GIKHRYNDVPVAREVLE 522


>gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Rhodococcus opacus B4]
          Length = 496

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 145/493 (29%), Positives = 221/493 (44%), Gaps = 25/493 (5%)

Query: 11  FPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            PE++ +L          +  +  ++ DSR ++AG ++ A+ G    G  F  +A ++GA
Sbjct: 14  LPEVLRRLGRSATLCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASRGA 73

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            A++      +           P +VV + R+ L   AS +YG   E  ++  VTGT+GK
Sbjct: 74  VAMLSDRTSDV----------LPTIVVGDPRRILGPLASWMYGDPSEAFDVYGVTGTNGK 123

Query: 127 SSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +S    +    + +G  +    G T      ++    TTP    L + L+  + Q +  V
Sbjct: 124 TSTVYLLDAGLRAAGAVAGMMTGITVRGPGGSRSATRTTPEACELQQTLAAFAEQRIGAV 183

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSHGL  HR+DG     G FTNL RDH+D+H    AYF AK RLF+    +   A 
Sbjct: 184 AMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKARLFDP---RHCAAA 240

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D      +           S       IH   V A       T+   G        
Sbjct: 241 AIGIDDEFGRRLAATVTVPRLTFSSRTTAADIHASGVHADEGGTSFTLHGAGDRISVRLR 300

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G  QV NAL A    +  G+D    +  +E L  VPGR E V         +VDY H 
Sbjct: 301 LLGVHQVDNALAAIAALVVRGVDPGAAIAGIEDLDTVPGRLEAVDAGQ-PFFAFVDYMHN 359

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +     +   +R++T+GR+I V G  G+RD GKR  +G  A   AD  +VTD++P SED 
Sbjct: 360 TAGQRRLFPYLRSLTAGRVIAVVGATGERDPGKRAPLGATAARFADAVVVTDESPYSEDA 419

Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           +++R ++  G         +   +R EAI  A+ +    DV+VVAG+GH+ V       +
Sbjct: 420 QRLREDVARGARSGGNADVLVVPDRTEAIAAAVTLAGPGDVVVVAGRGHDRVQAYGPRRR 479

Query: 481 KMSVDCDIIREIL 493
               D   + E L
Sbjct: 480 V-FDDRIALHEAL 491


>gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces lividans TK24]
 gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
 gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
          Length = 497

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 142/504 (28%), Positives = 224/504 (44%), Gaps = 23/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++         EL +QL +        +I  ++ DSR ++ G ++ A+ G +  G  F+
Sbjct: 1   MRIS---ATPLAELADQLGVAAPDGS-AEITGITHDSRAVRPGDLYAALPGARLHGADFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA   GA A++   A + +  +A +    P LVVD+ R  +   A+ +YG    +   +
Sbjct: 57  TQAAGLGAAAVLTDPAGAERAAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TGTSGK++ A  V+   + +  +         I      +  TTP    L    + + 
Sbjct: 113 GITGTSGKTTTAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMR 172

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   V++E SSH L   R+D        FTNL  +H+++H   + YF AK +LF    
Sbjct: 173 ERGTEAVAMEVSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKR 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +        DD Y + + K A        + G+        +V         T+     
Sbjct: 233 SRLGVVN--VDDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKG 290

Query: 299 D-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PL G F V N L A     A G+D     + +  +  VPGR E V    +   
Sbjct: 291 ERIAAKSPLAGPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV-DEGQPFF 349

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAH ++++E +L+ +R +T G++  V GCGGDRD  KR  MG      AD A++T 
Sbjct: 350 AVVDYAHKTDAVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTS 409

Query: 418 DNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DNPRSEDP  I A ++ G                +R  AI  A+      D ++VAGKGH
Sbjct: 410 DNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGH 469

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E    +  G  +   D  ++RE +
Sbjct: 470 EQGQDIA-GVVRPFDDRQVLREAI 492


>gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
 gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
          Length = 496

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 140/477 (29%), Positives = 230/477 (48%), Gaps = 20/477 (4%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +  +   +++S+      +FVA+VG  +DGH F+ +AIA GA AI+   A      
Sbjct: 8   LGAEDIVVRSCAANSKLCLPDDLFVAMVGAHQDGHDFVEEAIANGASAILSERA------ 61

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRS 140
              + +  P+ +V+NT+   +     L G   + +  + VTGT+GK++V   +Q I + +
Sbjct: 62  ---LPTTRPVCIVENTQSAYAQICQALAGDPSKRMRVIGVTGTNGKTTVCRLIQSIMETA 118

Query: 141 GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G +               Q    TTP+   LA  LS +   G TH  VEASS  L + RL
Sbjct: 119 GATVGMSSSLGYDNGYDRQPWDCTTPNAAVLADLLSRMEYNGCTHAVVEASSEALSRDRL 178

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DGI+L A + TNL +DH+D H +   Y  AK       L +   A++ ADD+   +++ +
Sbjct: 179 DGIELDAVAITNLRQDHLDVHGSVTNYHRAKK-KILGRLRETGFAVVNADDSACNKLLSQ 237

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  V   G     I    V    ++Q   +S   +       + G+  VYN LVAA
Sbjct: 238 IETPALSVALHG--AAEITASVVERHKSEQTFLLSAGDETVPVCTRMIGDHHVYNCLVAA 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +  G+D   V+  LE++  +PGR + +        ++VD AHT ++L M LK +R +
Sbjct: 296 AVGLVYGVDLKTVVRGLERVDSIPGRMQRIECGQ-PFGVFVDLAHTHDALAMALKALRRV 354

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
           T GR+I V+G  G  D  KRP++G++A   AD++++T  NP  E P ++  +I+ G    
Sbjct: 355 THGRVICVYGADGLGDPSKRPLLGRVAERGADLSLITSANPGDESPLEVIHDILDGYERP 414

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  NR  AI  A+      D +++AG+G   +  +   E+    D  I +  L
Sbjct: 415 ARAHVMPNRAAAIEWALSEAQTGDTVLIAGRGTPNLQTLRE-EELPLDDVQIAQSWL 470


>gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6578]
          Length = 496

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 135/480 (28%), Positives = 216/480 (45%), Gaps = 22/480 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  ++ DSR +++G +F A+ G   DGH F+  A+ +GA A+V            + 
Sbjct: 15  DPPVRLLAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVVHERELP------SY 68

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
           R     L V N R+ LS  ++  YG   ++  ++ VTGT GKSS   F+ Q+ + SG+  
Sbjct: 69  REGVVYLRVKNARRALSAASAVFYGHPSQDLEVIGVTGTDGKSSTTYFIYQLLRASGVKV 128

Query: 145 FQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RL 199
             I                R +TP   ++  AL+ +   G TH  VEA+SHGL     RL
Sbjct: 129 GCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATSHGLSPRTARL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + ++   G  TN+  +H+++H + + Y           LP+E  A++  DD  S  + +R
Sbjct: 189 EDVRFTVGVLTNITHEHMEFHGSFEQYR-EDKGRLFRGLPEEGKAVLNLDDPSSGFLAER 247

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                        +G  +  +         +  +        ++                
Sbjct: 248 TRAGVWGYGLGAREGARLWAEVREESLAGSRCLVHGRETLEVWVPFPGRFNVENVLAAVL 307

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G   A G +    L H+  L  VPGR E V    +   + VDYAHT  + E +L  +R  
Sbjct: 308 GAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQPFLVLVDYAHTPGAFEKLLPFVRRF 366

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             GR+IVVFG  G+RD+ KRP+ G++A   A++ ++TD++PR ED   I  EI  G  G 
Sbjct: 367 VEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVLTDEDPRGEDRMAILREIAAGCEGL 426

Query: 440 IE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +E        +R EAI  A+ M  + D ++  GKGHE   +   G      +   +RE L
Sbjct: 427 MEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGHERSIVTAEGPVAW-DEVGAVREAL 485


>gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
 gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
          Length = 525

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 158/500 (31%), Positives = 231/500 (46%), Gaps = 24/500 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
               EL   L     +  +  +  VS DSR ++ G ++ A+ G    G  F  QA  +GA
Sbjct: 20  ATAAELARALGAAAPE-EDLALRGVSLDSRSVEPGDLWCALPGATAHGAEFAAQAAGRGA 78

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
              +   A           +  P LVVD+ R   +L A+ ++G+  E    + VTGT+GK
Sbjct: 79  AMALTDPAG----RERCEAAGLPALVVDDPRSATALAAALVHGRPAERLATIGVTGTNGK 134

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS------FAQDNRLTTPSPIYLAKALSYLSSQ 180
           +SV + + +     G+ +  IG + T          A     TTP    L   L+ ++  
Sbjct: 135 TSVTTAITRALLELGVPAGAIGTSGTSYRAADGSDHAIATVRTTPEAPELHGLLARMAED 194

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           GV  VS+E SSH L  HR D +      FTNL +DH+D+H T +AY+ AK  LF     +
Sbjct: 195 GVEVVSMEVSSHALVLHRADEVVYDVVCFTNLTQDHLDFHGTMEAYYEAKRTLFTPAHAR 254

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                   DD + + + + A        +          ++  A      V +       
Sbjct: 255 RGVV--CVDDDWGRRLAREAQIPVTTYATRPGIDADHRAREHRADGYGSIVEVDGPDGTR 312

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                LPG   V N L A  L  AIG     V++ L +   VPGR E         R  V
Sbjct: 313 TLHAALPGRHYVANTLAADLLLAAIGRTGEDVVQALGEAGTVPGRME--PVAHTPIRGVV 370

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY+HT ++LE  L  +R +  +GR++VV G GGDRD+ KRP+MG++A   AD+ +VTDDN
Sbjct: 371 DYSHTPDALEQALLTLRAVPGTGRLLVVMGAGGDRDRAKRPLMGEVAARYADVVLVTDDN 430

Query: 420 PRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           PR+EDP  IRAE++ GIP        +   R EAI  A  + +  D ++VAGKG ET   
Sbjct: 431 PRTEDPAAIRAEVLSGIPEGTKAQVHDVDGRGEAIALAAYLADVSDTILVAGKGAETGQQ 490

Query: 475 VTNGEKKMSVDCDIIREILG 494
           +  G      D   +R+ L 
Sbjct: 491 IG-GIVHPFDDRLRLRDALR 509


>gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 483

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 128/502 (25%), Positives = 225/502 (44%), Gaps = 29/502 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK   +I   F ++I+ +S     +  +  I  +++DSR       FVAI G+  DGH +
Sbjct: 1   MK-GKIILISFEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTY 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           I  AI +GA  I+ +   + ++           + V++ RK L+  ++ +Y    + +  
Sbjct: 60  IASAIKKGASLIIHTEDVTCEE-------GISYIRVNDPRKALAQISNLIYDFPSKKMEL 112

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSY 176
           +AVTG++GK++ +  +  +       S  IG  +            TTP    + + L+ 
Sbjct: 113 VAVTGSNGKTTTSRLIAFLMGEIFGDSASIGTNNAHVGDDIIPTSNTTPDITEVNRILAK 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              + + H+++EASSHGLDQ RL G+ +  G FTNL  +H+DYH+T   YF AK      
Sbjct: 173 CLEKNIHHLALEASSHGLDQKRLYGLDIAYGIFTNLSEEHLDYHKTMDNYFKAK-----M 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +L + +   +   D    +  K                 +     V          IS +
Sbjct: 228 ILFENAKNTLANIDDPYGKRAKELFPKTITFAIDEESADYRAEDIVKKDG-----KISFK 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +  +F+      +++YN L A      +G     + E  +K   +  RFE    N  G 
Sbjct: 283 IRGVEFVLNKIANYEIYNTLAAVACLNQMGASMEDIGEAFKKFKGIKSRFE-YIENDLGI 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I +D+AHT  + E + +++       II VFG  GDR+   R ++G         +++T
Sbjct: 342 NIILDFAHTPRAYEALFESVPK--GSNIIAVFGINGDRNSEFRRLIGNACGKYKVFSVLT 399

Query: 417 DDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P+ ++ + I  EII G+      ++ +  R +A+R AI+M    D + + GKG E  
Sbjct: 400 TDDPKFDNVDHINEEIIVGLDEYKADYVIRKERKDAMRYAIKMAKPGDYVFLLGKGEENF 459

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
                 EK    + + +RE+L 
Sbjct: 460 IKFHGNEKTPYSERETLREVLE 481


>gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
 gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
          Length = 505

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 141/471 (29%), Positives = 223/471 (47%), Gaps = 18/471 (3%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR +    +FVAI  +      +I  A+AQGA A++V +  +       +  +  +
Sbjct: 38  LVQDSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAA-----EGVELDKQV 92

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + N  + +   A    G    ++  + +TGT+GK+S A  + Q  Q+ G++S  IG  
Sbjct: 93  FAIANLHEVIGRMADAFVGHPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIGTL 152

Query: 151 S--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +  +TTP    + + L      GV +V++E SSH L+Q R+DG+     +
Sbjct: 153 GAGITGERRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDGVAFNIVA 212

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-- 266
           FTN  RDH+DYH T + Y  A  +     LP  + A++  DDA ++         G R  
Sbjct: 213 FTNFTRDHLDYHGTMEEY--AAQKAKIFTLPGVTTALLNLDDAAAENHFHNTLPEGMRGI 270

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            + S G+    +    V       +  + +EG+    +  L G F V N L  A +  A 
Sbjct: 271 GMTSRGHSEASVRADHVQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTCATVLWAQ 330

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI+   + E L  L  V GR   +  N +   + VD  HT +++   +  +R     RI+
Sbjct: 331 GIEPQAIAEALAPLEPVLGRMTRIRENDKLPLVVVDAGHTPDAVRQAVTALRESGHTRIV 390

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
            VFG  GDRD GKRP M +I  + +D+ +VTDD+  +ED ++I A I  G       IE 
Sbjct: 391 TVFGATGDRDPGKRPEMARIVEEGSDLIVVTDDDVHNEDGDQIVAHIRAGFEHPERVIEI 450

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R  AI  AI+  N  DV+++ GKGHE   I+ N E+    D D    +L
Sbjct: 451 RDRASAIAYAIDAANPDDVVLLQGKGHEPYQIIGN-ERVPFSDLDTAIRLL 500


>gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces coelicolor A3(2)]
 gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces coelicolor A3(2)]
          Length = 506

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 141/494 (28%), Positives = 221/494 (44%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL +        +I  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELADQLGVAAPDGS-AEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   A + +  +A +    P LVVD+ R  +   A+ +YG    +   + +TGTSGK++
Sbjct: 76  VLTDPAGAERAAAAGL----PALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   + +  +         I      +  TTP    L    + +  +G   V++E
Sbjct: 132 TAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+D        FTNL  +H+++H   + YF AK +LF     +        
Sbjct: 192 VSSHALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRSRLGVVN--V 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           DD Y + + K A        + G+        +V         T+     +      PL 
Sbjct: 250 DDEYGRRLAKEATVPVVTYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLA 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V    +     VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERV-DEGQPFFAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T G++  V GCGGDRD  KR  MG      AD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTEGKLHAVLGCGGDRDTTKREPMGAAVARFADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRQVLREAI 501


>gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
          Length = 526

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 132/478 (27%), Positives = 215/478 (44%), Gaps = 20/478 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++  S   ++ W+FVAI G K+ G  F   AI  GA  ++       Q F   +    
Sbjct: 46  RGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGL--GV 103

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P++ V + R  +    + +Y         +AVTGT+GK++ +  ++        ++   G
Sbjct: 104 PVIQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCG 163

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T     + +   TT     +A+ L+           +E S+H L  HR+DGI     
Sbjct: 164 TVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHALSLHRVDGIVFDVA 223

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL  DH+DY+   + YF AK  LF     +        DD + + + ++A      V
Sbjct: 224 AFTNLQHDHLDYYGDMENYFQAKALLFTPEHSRHGVV--CVDDEWGRRLAQQATVPVTTV 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIA 324
            ++  +     ++ V       +   ++            P+ GE  + N  VA    ++
Sbjct: 282 SALTEEAADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTAVAIVSAVS 341

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGR 383
           +GID A V+  +E    +PGR E V     G   + VDYAHT  +LE  L++ R +TSGR
Sbjct: 342 LGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPEALEWTLRSTRELTSGR 401

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---- 439
           +++VFG  GDRD  KR  + +IA   AD+  VTD+NPR+E P++IR  ++ GI       
Sbjct: 402 VVIVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQEIRNYLLRGIASVRPGM 461

Query: 440 ----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                    R +A+R AI      D +++ GKG E    +  G      D  +  E+L
Sbjct: 462 EDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAEWYQEIQ-GIHHRYNDVPVAAEVL 518


>gi|87122632|ref|ZP_01078509.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
 gi|86162090|gb|EAQ63378.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
          Length = 499

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 145/499 (29%), Positives = 237/499 (47%), Gaps = 21/499 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I     E    L    +   + +   +++DSR++    +F A+ G   +G  ++    AQ
Sbjct: 8   IKSHLVEAFFGLKTGQLSSFD-EFEYLATDSRNLSKSTLFFALPGVSSNGWDYLASIAAQ 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G            +        +  ++ V +T   ++ F ++    +P +I AVTGT+GK
Sbjct: 67  GCR-----VVVVPEVVKLDETLDLAVIRVPDTLMSMTAFITKFALPYPSSICAVTGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           SS++ +  QI +   LSS  +G          + +  TTP  + +       +SQGV H+
Sbjct: 122 SSISYYSAQIAKAINLSSAIVGTFGVGLLDDLKPSEQTTPDLLSMHTLAITFASQGVEHM 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + EASSH LDQ R++G+ +    ++NL RDH+DYH +  AY  AK +LF     K +   
Sbjct: 182 TFEASSHALDQGRIEGLPIETAIYSNLSRDHLDYHGSMAAYAEAKAKLFRFPQLKRAVIC 241

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I   D    ++M  A        S+ ++        +  + ++ +  + V GK +    P
Sbjct: 242 I---DDEYSDIMLDAAACPVYSYSLQHENADFFASNLNYLTDRVEFDLKVLGKSYSVSLP 298

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GEF V NA+ A         D A ++  L  L   PGR + V        + +DYAHT
Sbjct: 299 LLGEFNVANAIAALAAHWDQVEDKAQLISALSLLSGAPGRMQMV-NLQSAPLVVIDYAHT 357

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++E+ LK +R    GR+  ++GCGGDRD+GKRP+M + AL  +DIA +T DNPR+E  
Sbjct: 358 PSAIEVALKALRLHNKGRLTCIYGCGGDRDRGKRPLMTEAALAYSDIACLTSDNPRTESV 417

Query: 426 EKIRAE---IIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            +I  +   ++      +E        +R  AI   I      DV+++AGKGHE    + 
Sbjct: 418 AQILDDALIMLENKDALVEQGSLHILPDRRAAIFDVIAKAQSDDVILIAGKGHENYQDI- 476

Query: 477 NGEKKMSVDCDIIREILGL 495
           +G K    D ++  E L L
Sbjct: 477 DGVKHHFDDAEVALEALTL 495


>gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
 gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
          Length = 503

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 138/504 (27%), Positives = 221/504 (43%), Gaps = 29/504 (5%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+    PE +           + ++  ++ DSR +++G +F A+ G   DGH F+  
Sbjct: 5   LSSLLDAIKPEEVRGGG-------DPRVRLLAYDSRDVESGALFFALPGLHTDGHRFVED 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A+ +GA A+V            + R     L V N R+ LS  ++  YG   ++  +  V
Sbjct: 58  ALGRGAVAVVHERELP------SYREGVVYLRVKNARRALSAASAVFYGHPSQDLEVTGV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GKSS   F+ Q+ + SG+    I                R +TP   ++  AL+ +
Sbjct: 112 TGTDGKSSTTYFIYQLLRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARM 171

Query: 178 SSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              G TH  VEA+SHGL     RL+ ++   G  TN+  +H+++H + + Y         
Sbjct: 172 REAGCTHAVVEATSHGLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYR-EDKGRLF 230

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP+   A++  DD  S  + +R             +G  +  +         +  +  
Sbjct: 231 RGLPEGGKAVLNLDDPSSGFLAERTRAGVWGYGLGTREGARLWAEVREESLAGSRCLVHG 290

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 ++                G   A G +    L H+  L  VPGR E V    + 
Sbjct: 291 RETLEVWVPFPGRFNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERV-EAGQP 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VDYAHT  + E +L  +R    GR+IVVFG  G+RD+ KRP+ G++A   A++ ++
Sbjct: 350 FLVLVDYAHTPGAFEKLLPFVRRFVEGRLIVVFGSAGERDRTKRPMQGRVASRWAEVVVL 409

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           TD++PR ED   I  EI  G  G +E        +R EAI  A+ M  + D ++  GKGH
Sbjct: 410 TDEDPRGEDRMAILREIAAGCEGLVEGESLFMVPDRREAIGLAVGMAREGDAVLCLGKGH 469

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   +   G      +   +RE L
Sbjct: 470 ERSIVTAEGPVAW-DEVGAVREAL 492


>gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 476

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 132/502 (26%), Positives = 214/502 (42%), Gaps = 35/502 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL DL+ K          +      + K+  V+++S  +  G+IFVA+ G+  DGH +I 
Sbjct: 3   KLSDLVRKIEY-------LDVKHGADFKVRAVTNNSLKVGEGFIFVAVKGSIFDGHKYID 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           +AI +GA+A+V +            R +   + V + R+ L+  ++ +     E   ++ 
Sbjct: 56  EAIKKGAKAVVHTEDVE-------YREDITYIRVFDPRQTLAEISNLITDFPSEKLSVIG 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ +  +  + ++       IG           +   TTP    + + L    
Sbjct: 109 VTGTNGKTTTSKLIAYLIEKVFGPCANIGTDGANVGGEIIETSNTTPDITEINRILEKCV 168

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G+ +V++EASSHGL Q RL G++   G F NL  +H+DYH+T      A  +    L 
Sbjct: 169 EKGIKYVTLEASSHGLVQKRLAGVRFKVGIFNNLSTEHLDYHKTMD----AYFKAKMILF 224

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   DD +     K        +     +   I    +          I     
Sbjct: 225 ENSEITIANIDDPWG---KKAVELFPTTLSFGKDEKANIRATDISKTDKGISFKIDG--- 278

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             DF      +F++ N L A     ++G     + E +     V  RFE    N +G  I
Sbjct: 279 -VDFFIRTIADFELNNYLAAISTLKSLGASLTELSEVITDFPGVGSRFE-YIENDKGLNI 336

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+AHT  + E I K++      + I VFG  GDR+   R ++GK   D    AIVT D
Sbjct: 337 IVDFAHTPRAFEEIFKSLPR--DKKKIAVFGIQGDRNPEFRNLIGKTVSDYGIYAIVTTD 394

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P+ +  E I  +I+ G+      +    +R EAI   + M    D ++  GKG E    
Sbjct: 395 DPKFDTYENISKDIVAGMAENYGAYTLIKDRKEAIEAGLRMAKPGDYVLFMGKGEENFIK 454

Query: 475 VTNGEKKMSVDCDIIREILGLI 496
           +   EK    +   IRE L  I
Sbjct: 455 LHGNEKTPWNEKATIRETLEKI 476


>gi|160933543|ref|ZP_02080931.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
 gi|156867420|gb|EDO60792.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
          Length = 492

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 125/501 (24%), Positives = 218/501 (43%), Gaps = 29/501 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+DL+     + +           +  +N+V  DSR ++ G +FV ++G+  D H +  
Sbjct: 5   KLKDLLEGVGYKCLQGDD-------QVLVNDVVYDSRRVRPGCVFVCLIGSAVDSHQYA- 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
                     V + A ++        +   +++V++TRK ++  ++ L+G        + 
Sbjct: 57  -------AQAVEAGAAAVVASRQLELAKGTLVLVEDTRKAMAYMSAALFGHPAAKLKTVG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLS 178
           +TGT GK++ A  ++ I ++ G+ +  IG     I         TTP    + K L+ + 
Sbjct: 110 ITGTKGKTTTACMIKTILEKGGIKTGVIGTLGVIIGDTTYPTNNTTPESYDVQKYLNQMV 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G     +EASS GL  HR DG+    G FTN   DHI   + + +           L 
Sbjct: 170 EEGCQCAVMEASSLGLKWHRTDGLVFDYGVFTNFSPDHIG--ENEHSCLEEYAACKGLLF 227

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISVE 296
                 ++  DD   + ++K              Q +     +  +              
Sbjct: 228 QSCKLGLVNIDDPACETILKDHTCELETFGFSNPQAQLKGSNEGLIYRPGYLGAHFDVSG 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG+F  YNA+ A  +C    +     +        V GR E V       
Sbjct: 288 AMKLSVDVDIPGKFSAYNAIAAIAVCRHFPVS-EQNILDGLNEVKVKGRVEPVKVPG-NY 345

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + +DYAH + S+E IL  +R     R++ +FG GG+R + +R  MG+++  LAD+ ++T
Sbjct: 346 TLLIDYAHNAVSMENILTTLREYQPHRLVCMFGAGGNRAKSRRYEMGEVSGRLADLTVIT 405

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +DN R E+   I  +I  G+       I   NR +AIR  IE   + D++V+AGKGHE  
Sbjct: 406 EDNSRFENVMDIIQDIQTGMAKTQGKSIVIPNRRDAIRYCIENAQEHDIVVLAGKGHEDY 465

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  G K+   + +I+ +IL
Sbjct: 466 QEIK-GVKRHFDEREIVADIL 485


>gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
 gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
          Length = 526

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 134/478 (28%), Positives = 215/478 (44%), Gaps = 20/478 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++  S   ++ W+FVAI G K+ G  F   AI  GA  ++       Q F   +    
Sbjct: 46  RGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTDEDGRAQAFERGL--GV 103

Query: 91  PILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P++ V + R  +    + +Y         +AVTGT+GK++ +  ++        ++   G
Sbjct: 104 PVIQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMRAAIASRFPNASLCG 163

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T     + +   TT     +A+ L+           +E S+H L  HR+DGI     
Sbjct: 164 TVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHALSLHRVDGIVFDVA 223

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL  DH+DY+   + YF AK  LF     +        DD + + + ++A      V
Sbjct: 224 AFTNLQHDHLDYYGDMENYFQAKALLFTPEHSRHGVV--CVDDEWGRRLAQQATVPVTTV 281

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIA 324
            ++  +     ++ V       +   ++            P+ GE  + N  VA    ++
Sbjct: 282 SALTEETADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGEVNIQNTAVAIVSAVS 341

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITSGR 383
           +GID A V+  +E    +PGR E V     G   + VDYAHT  +LE  L++ R +TSGR
Sbjct: 342 LGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPEALEWTLRSTRELTSGR 401

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---- 439
           ++VVFG  GDRD  KR  + +IA   AD+  VTD+NPR+E P++IR  ++ GI       
Sbjct: 402 VVVVFGTDGDRDATKREHLAQIAAREADVLWVTDENPRTEVPQEIRDYLLRGIASVRPGM 461

Query: 440 ----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                    R +A+R AI      D +++ GKG E    V  G      D  +  E+L
Sbjct: 462 EDVTEVTTCRRDAVRRAILAAEPGDTVIITGKGAEWYQEVQ-GIHHRYNDVPVAAEVL 518


>gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
 gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
          Length = 498

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 133/504 (26%), Positives = 220/504 (43%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + D+I         ++     +  +  +N +S DSR I  G +FVAI G   DGH FI
Sbjct: 1   MNILDIIDNI------KIKTIYGKLPD-SVNSISQDSRKIGKGDVFVAIKGYTVDGHNFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENIL 118
            + I QGA  ++ S       +      N  +LVV      K  S+ A ++      + +
Sbjct: 54  EKVIEQGAALVIASR------YENYNVENCAVLVVREHEIEKIASMIAKKINEGADIHTV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSY 176
           AVTGT+GK+S+++ V  + +  G SS  IG                TTP  + L   +  
Sbjct: 108 AVTGTNGKTSISTLVHNMLRNLGESSAYIGTNGFGKNDDEPIYFGNTTPDVVTLHNQIGE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLF 234
           L  + + +++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y    + +   
Sbjct: 168 LRHENIKNLAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFST 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQ 290
                 E+   +   D    +++ +         S+  +    +   +         K  
Sbjct: 228 LGNNLSEAKFGVLNKDDSYYKIISKCLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTS 287

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+      F+      G+F V N L A       G     ++  L KL  + GR E +G
Sbjct: 288 FTLKSPEGTFECTTNYIGDFMVSNVLAALSAVWVKGYSVEQLVNILPKLGALYGRMEILG 347

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     I  D+AHT +  E +L+  R I  G R ++V G GG RD  K P++G+I  + 
Sbjct: 348 -DDLPIDIISDFAHTPDGYEKLLEATREIRKGKRTLLVTGMGGGRDISKGPLIGEIISE- 405

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  ++T D+PR ED E +   I  G+    + +   R +A++  IE+    DV+++A K
Sbjct: 406 ADYVVITTDSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSKPGDVVILASK 465

Query: 468 GHETVHIVTNGEKKMSVDCDIIRE 491
           G E   I+  G+K    D  +  E
Sbjct: 466 GREDYEILQGGKKVWHSDPIVAVE 489


>gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
 gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
          Length = 477

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 227/494 (45%), Gaps = 28/494 (5%)

Query: 11  FPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F ++I+ +S     +  ++ I +V++DSR +  G IFVAI G+  DGH +I  AI +G+ 
Sbjct: 4   FEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEKGSS 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
            I+ ++    ++           + V + RK L+  ++ +Y    + +  +AVTG++GK+
Sbjct: 64  LIIHTADIKREE-------GISYIKVTDPRKTLAQISNLIYDFPSKKMDLVAVTGSNGKT 116

Query: 128 SVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  +  +  +  G S+      + +         TTP    + + L+    + + H++
Sbjct: 117 TTSRLISFLMGEIFGESASIGTNNAVVGDEIIPTSNTTPDITEVNRILAKCLDKNIHHLA 176

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASSHGLDQ RL G+ +  G FTNL  +H+DYH+T   YF AK      ++  E+    
Sbjct: 177 LEASSHGLDQKRLYGLDISYGIFTNLSEEHLDYHKTMDNYFKAK------MILFENAKTT 230

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+         +   +     ++  +      + +      +   IS + K  +F+   
Sbjct: 231 IANIDDPYGKKAKELFSNTVTFAIDEKNADYRAEDIRK----EDGKISFKIKGCEFVIRK 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
              +++YN L A      +G     +    +K   V  RFE    N  G  I +D+AHT 
Sbjct: 287 IANYEIYNTLAACACLNQMGASMEEIAAAYKKFKGVKSRFE-YIENDLGINIILDFAHTP 345

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + E + +++      + I VFG  GDR+   R ++G         A++T D+P+ +D +
Sbjct: 346 RAYEALFESVPE--GAKKIAVFGINGDRNAHFRRLIGNACGKFDTFAVLTTDDPKFDDID 403

Query: 427 KIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I  EII G+      ++ K +R +A+  A       D + + GKG E        EK  
Sbjct: 404 HINEEIIVGLDDYKQAYVIKKDRTDAMEYAFRKARPGDYVFLLGKGEENFMKYHGNEKTP 463

Query: 483 SVDCDIIREILGLI 496
             + + I++ L  I
Sbjct: 464 YSERETIKKALARI 477


>gi|260578093|ref|ZP_05846014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603732|gb|EEW16988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
          Length = 536

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 147/525 (28%), Positives = 226/525 (43%), Gaps = 49/525 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   E+       P  W   ++   +  S+ ++ G +F A+ G K  G  F        A
Sbjct: 5   KQLAEICGGTLTGP--WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATFAAD---SKA 59

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            A++  +A       A      P +VVDN RK++   A+ +YG        + +TGTSGK
Sbjct: 60  AAVLTDAAGQRIIDDAPTP--LPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ +  V++    SGL    IG T T  +       LTTP    L   L+ + ++GVTH+
Sbjct: 118 TTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHL 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKESP 243
            +E SSH L   R+ G+     +FTNL +DH+D+H T + YF AK       E       
Sbjct: 178 VMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGT 237

Query: 244 AIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           A++  +D + + +   A         +  G    +      +       A + +Q + +S
Sbjct: 238 AVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRLS 297

Query: 295 V----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKLHVVPGRFE 347
           +    E ++ D+   + G F   N+LVA     A+  +                VPGR +
Sbjct: 298 IAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRMQ 357

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGK 404
            V    +     VDYAH   +++ +L ++         RI +V G GG+RD  KR IMG+
Sbjct: 358 LV-EEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIMGR 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----------------FIEKGNRIEA 448
           IA +LAD   VTDDNPR E+P  IR  I  G                        +R EA
Sbjct: 417 IAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRAEA 476

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I  A+      D +VVAGKGHE   +V  G+     D + +   L
Sbjct: 477 IAAAVTWARPGDAVVVAGKGHEKGQLVA-GKMHPFDDVEELATAL 520


>gi|68535820|ref|YP_250525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
 gi|68263419|emb|CAI36907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
          Length = 536

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 148/525 (28%), Positives = 227/525 (43%), Gaps = 49/525 (9%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   E+       P  W   ++   +  S+ ++ G +F A+ G K  G  F        A
Sbjct: 5   KQLAEICGGTLTGP--WEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATFAAD---SKA 59

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
            A++  +A       AT     P +VVDN RK++   A+ +YG        + +TGTSGK
Sbjct: 60  AAVLTDAAGQRIIDDATTP--LPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ +  V++    SGL    IG T T  +       LTTP    L   L+ + ++GVTH+
Sbjct: 118 TTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHL 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM--RLFEELLPKESP 243
            +E SSH L   R+ G+     +FTNL +DH+D+H T + YF AK       E       
Sbjct: 178 VMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVPGT 237

Query: 244 AIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           A++  +D + + +   A         +  G    +      +       A + +Q + +S
Sbjct: 238 AVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRLS 297

Query: 295 V----EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKLHVVPGRFE 347
           +    E ++ D+   + G F   N+LVA     A+  +                VPGR +
Sbjct: 298 IAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRMQ 357

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPIMGK 404
            V    +     VDYAH   +++ +L ++         RI +V G GG+RD  KR IMG+
Sbjct: 358 LV-EEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGAGGNRDHDKRAIMGR 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----------------FIEKGNRIEA 448
           IA +LAD   VTDDNPR E+P  IR  I  G                        +R EA
Sbjct: 417 IAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPDRAEA 476

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I  A+      D +VVAGKGHE   +V  G+     D + +   L
Sbjct: 477 IAAAVTWARPGDAVVVAGKGHEKGQLVA-GKMHPFDDVEELATAL 520


>gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
 gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
          Length = 492

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 205/474 (43%), Positives = 271/474 (57%), Gaps = 19/474 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF          A   ++         T  
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            + P     + V + R+ L+L A+RL G+ PE ++AVTGTSGKSSVA FV+QI  R G  
Sbjct: 76  EDLPEATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRD 135

Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G    +++       LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+
Sbjct: 136 SASLGTVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGV 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +L A +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  
Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADA 255

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAA 319
           AG  + + G  G FI L +       Q +T+S  GKD+    P            A   A
Sbjct: 256 AGHAIRTTGRGGDFIRLVEAGTEGFAQSLTLSHAGKDYRVRLPLVGGFQVENALVAAGLA 315

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A   D A V   LE L  VPGR E +G  + G    VDYAH   +LE +L  +R  
Sbjct: 316 LATPAGQADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYAHKPEALEHVLSALRPF 374

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            SGR++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG 
Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            E G+R EAIRT +  L   DVLVVAGKGHET  IV         D D +R  +
Sbjct: 435 EEIGDRAEAIRTGVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAI 487


>gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella cf. novicida 3523]
          Length = 475

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 138/490 (28%), Positives = 225/490 (45%), Gaps = 21/490 (4%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +++  L I  +     +I  +S DSR     W FVA+ G   DG+ +I   +A+  
Sbjct: 2   KNINQILKFLDIQTLSQNNFQIESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAKDI 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKS 127
             ++  S                I  + N ++ LS  A   Y  K P+NI+ +TGT+GK+
Sbjct: 62  SLVLTDSH--------EFEDQKRIFYIQNLKEKLSALAKWFYDYKKPQNIIGITGTNGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S++S++ Q    S   +  +G     I    +++  TT   + L + +SY  +     + 
Sbjct: 114 SISSYIAQFLDLSSQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYHKNYQN--LV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH LDQ R +G+      F+NL  DH+DYH++   YF AK +LF+        AII
Sbjct: 172 MEVSSHSLDQKRTEGLDFDVAVFSNLSHDHLDYHKSMDNYFEAKAKLFQF--KSLKKAII 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + +          V             K       +           ++   L
Sbjct: 230 NIDDEYGQRLCNITKVPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTKL 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+F + N  ++      +       +  L  +  V GR E +       +I +DYAHT 
Sbjct: 290 IGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKSVKGRMEVI-ELDNDIKIVIDYAHTP 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L+ +       +  +FGCGG+RD  KRPIM +IA + A   +VT+DN R E+ E
Sbjct: 347 DALEKALQTLANYNPNNLWCIFGCGGNRDTTKRPIMAQIAEEYASKIVVTEDNNRFENIE 406

Query: 427 KIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I ++I  G           +R +AIR +IE  N+ D++++AGKGHE      NG K+  
Sbjct: 407 NIFSDIKKGFKYPQKHTFITSREQAIRFSIENANQGDIILLAGKGHECYLD-KNGIKEYF 465

Query: 484 VDCDIIREIL 493
            + +II+ +L
Sbjct: 466 DEREIIKNML 475


>gi|87302991|ref|ZP_01085795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
 gi|87282487|gb|EAQ74446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
          Length = 508

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 146/497 (29%), Positives = 221/497 (44%), Gaps = 25/497 (5%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P Q  +  +  +S DSR + AG +F+ + G++ DG  F P A+         +      
Sbjct: 16  IPAQLPDAVVTGLSCDSRRVAAGTLFIGLPGSQVDGGSFWPAALE---RGAAAALIGPAA 72

Query: 81  DFSATIRSNTPILVVDNT-RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                     P+LV+++   ++    A+  +      +  + VTGT+GK++    ++ + 
Sbjct: 73  AAQCPPGPADPVLVLEDPVAEWAGRLAASFWHDPSRRLALIGVTGTNGKTTTTHLIEHLS 132

Query: 138 QRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G S+   G   +     +     TT     L   L+     G    ++E SSH LDQ
Sbjct: 133 AGCGKSTALFGTLINRWPGHSVTASHTTAFADVLQGQLARAVEAGAQLAAMEVSSHALDQ 192

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+ G       FTNL +DH+DYH + +AY  AK RLF   L   S A++  DD +   +
Sbjct: 193 RRVAGCHFAGAVFTNLTQDHLDYHPSMEAYLEAKARLFSSELLDGS-AVVNIDDPWGARL 251

Query: 257 MKRAHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +R        L                   + L  +    +    T+        F  P
Sbjct: 252 AERLSGQLGERLWRSSLAVAAAEVGPEDLPELRLDDLVFAADGVSGTLITPLGCGAFRSP 311

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--GRIYVDYA 363
           L G F + N L A G+    G+  A +LE +     VPGR E V          + VDYA
Sbjct: 312 LVGRFNLMNLLQAVGVLQQQGLPLAQLLEAIPSFRGVPGRMERVMLPEAAELPAVLVDYA 371

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE  L   R    G+++ VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+E
Sbjct: 372 HTPDGLENALAACRPFARGQLVCVFGCGGDRDRGKRPQMAAIAARLADRVVVTSDNPRTE 431

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP++I  +++ GIP       + +R  AI  A+ M    D++++AGKGHE   I+    K
Sbjct: 432 DPQRILDDVVAGIPSGTDLTVEVDRAAAIAAAVAMAGPSDLVLIAGKGHEDYQILGT-TK 490

Query: 481 KMSVDCDIIREILGLIL 497
               D +   + L   L
Sbjct: 491 VHFDDREEAEKALRARL 507


>gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
 gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
          Length = 487

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 214/490 (43%), Positives = 287/490 (58%), Gaps = 19/490 (3%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           P L +           R +  +++DSR +  G +FVA+ G   DG LF          A 
Sbjct: 4   PTLADLFPEADAAIAARPVAGLTADSRRVVPGGVFVAVPGTAADGRLF---------AAA 54

Query: 72  VVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              +         T  ++ P     + V   R+ L+L A+RL G+ PE ++AVTGTSGKS
Sbjct: 55  AARAGAVAVAGEGTRPTDLPEATAWIEVAEARRALALAAARLSGRQPETVVAVTGTSGKS 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVS 186
           SVA FV+QI  R G  S  +G    +++   +   LTTP P+ L + L+ L+ +G+T ++
Sbjct: 115 SVADFVRQILSRLGRESASLGTVGIVTNRGAEYGSLTTPDPVTLHQTLARLAGEGITDLA 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EASSHG++Q RLDG+ L A +FTNLGRDH+DYH T + Y  AK+RLF  LLPK  PAI+
Sbjct: 175 MEASSHGIEQRRLDGVALTAAAFTNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIV 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD AY++ V+  A  AG  VL+ G  G FI L +   +   Q +T++ +G+++    PL
Sbjct: 235 NADGAYAERVIGVADAAGHTVLTTGRSGDFIRLIESGTVGFSQSLTLAHDGREYRVRLPL 294

Query: 307 PGEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            G FQV NALVAAGL ++      D A V   LE L  VPGR E +G  + G    VDYA
Sbjct: 295 VGGFQVENALVAAGLALSTQAGAADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYA 353

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE +L  +R   SG+++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E
Sbjct: 354 HKPEALEHVLTALRPFASGQLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNE 413

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           +P  IRA I+   PG  E G+R EAIR  +  L   DVLVVAGKGHET  IV +      
Sbjct: 414 EPAAIRAAILAAAPGAEEIGDRAEAIRAGVRGLRAGDVLVVAGKGHETGQIVGS-RVLPF 472

Query: 484 VDCDIIREIL 493
            D D +R  +
Sbjct: 473 SDHDTLRAAI 482


>gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 514

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 162/490 (33%), Positives = 241/490 (49%), Gaps = 36/490 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I ++  DSR + +G  F+A+ G  +DGH ++P+A   GA   +V    + +       
Sbjct: 25  VSIVDLVDDSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGATLAIVEDEAAARVI----- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P +VV + R+  +L A+  +          AVTGT+GK++    ++ +   +G  + 
Sbjct: 80  -DMPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVGLLRHLLDVAGQRAA 138

Query: 146 QIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            IG                  LTTP P+ L + L  L+ +GVT V++E SSH L QHR+D
Sbjct: 139 SIGTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVAMETSSHALHQHRVD 198

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+   A  FTNL RDH+DYH T +AY +AK+ L    L  +  A    DD   +  +   
Sbjct: 199 GVHFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSL-LAPDGVACFNIDDVTWQHTVAEM 257

Query: 261 HNAGCRVLSVGYQGK----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +G +  +                   +        + +V  +          PL G+F
Sbjct: 258 DVSGSQASAPRRTTFSALQDADVTAHDVVYDATGSRFELRVRTAQGTTQHQVTLPLIGDF 317

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL AA   +A+GI    V + L +   VPGR E + T      +  DYAHT ++LE
Sbjct: 318 NVANALGAAAGALAMGITPQDVADGLSQSPQVPGRLERLRTEPT---VLRDYAHTPDALE 374

Query: 371 MILKNIRTITSG------RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             L  +R  T        R+IVVFGCGGDRD+GKRP+MG IA  LAD+ IVT DNPR+ED
Sbjct: 375 RALLAVRPFTMRPDGAPSRLIVVFGCGGDRDRGKRPVMGSIAERLADVTIVTSDNPRTED 434

Query: 425 PEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           PE+I  +I  G+         +R +AI  A+ M +  DV+V+AGKGHET   +       
Sbjct: 435 PERILDDIEAGMTRRDHQRIVDRRDAIAAALRMASAHDVVVLAGKGHETYQ-IRGTTSYP 493

Query: 483 SVDCDIIREI 492
             +  I++E+
Sbjct: 494 FDERIIVQEL 503


>gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
 gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
          Length = 481

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 138/496 (27%), Positives = 219/496 (44%), Gaps = 36/496 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKEDGHLFIPQAIA 65
           P L     +F       ++  V+ DSR +Q G++FVAI G         DGH +IPQAI 
Sbjct: 2   PTLQELFGLFGQTAPALEVRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYIPQAIQ 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
            GA A+V             +  + P L V + R  L+  ++  +G   + +  L VTG+
Sbjct: 62  NGAVAVV---------GMRELHLSVPYLRVADARAALADLSAAFWGYPAQRLELLGVTGS 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYLAKALSYLSSQ 180
            GK++VA  +  + QR+     ++          +       TTP    + + L      
Sbjct: 113 KGKTTVAVLLHHLLQRARPPVGRLSTVGIKIGEEELFLPGHFTTPEAPQVQEMLHRFVQA 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G     +E SSH L   R+ G++   G FTNL +DH+D H + + YF  K +L    L +
Sbjct: 173 GCRQAVLEVSSHALALERVRGLEYRVGVFTNLYQDHLDLHGSMENYFAEKKKL----LER 228

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ +D+ +++ +  R             Q        +       +  +      F
Sbjct: 229 SRFAVVNSDNPWTQTLRGRPQTWSY------GQQGDWQAHNLVESSTGLEFEVVSPMGRF 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G F   NAL A      +G+    + E L     VPGR + V       R+ V
Sbjct: 283 AVRLPMVGRFNAENALAAMAAAAQVGLSVEQIQEGLAGFPGVPGRMQLVQAA--PFRVVV 340

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT  SLE  L+ +R  T GR++VV G  G++D  +R  +G++A  LAD+AI T+++ 
Sbjct: 341 DFAHTGASLEAALQTLRPTTQGRLLVVIGAAGNQDPSRRVGIGQVAARLADLAIFTEEDH 400

Query: 421 RSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R+E  E I   +         ++   +R EAIR AI+     D L+ +GKGHE       
Sbjct: 401 RTEPLEAILEAMAQAHGDPRRYVLIPDRREAIRYAIQEAQPGDTLLFSGKGHERTLE-RG 459

Query: 478 GEKKMSVDCDIIREIL 493
            E     + D +R  L
Sbjct: 460 TEAIPWNEVDEVRRAL 475


>gi|90655385|gb|ABD96226.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured marine type-A
           Synechococcus GOM 3M9]
          Length = 511

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 147/497 (29%), Positives = 222/497 (44%), Gaps = 32/497 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ---------AIAQGAEAI 71
            P    +  + +++ DSR +Q G +F+ + G + DG  F  Q          I  G  A 
Sbjct: 16  IPEGLPDPLLQQITCDSRAVQDGTLFLGLPGERVDGGRFWRQALEAGAAAAVI--GPSAA 73

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
            V    + +                     L   A+  + +    +  + VTGT+GK++ 
Sbjct: 74  AVLPPAAHEPVVVVGEPVARQ---------LGELAAAFWEQPSSRLALIGVTGTNGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              ++ +    G  +   G   +     +     TT     L   L+  +S G    ++E
Sbjct: 125 THLIEHLATAIGTPTALFGTLVNRWPGHSITATHTTGFADRLQGQLAAAASAGAQLGAME 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI-IY 247
            SSH L Q R+ G +  A  FTNL +DH+DYH + QAYF AK  LF + L +  PA  + 
Sbjct: 185 VSSHALAQQRVAGCRFAAAVFTNLTQDHLDYHASMQAYFEAKAALFADPLLQSGPARAVV 244

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D      +       C   S+   G  + +  +       +  +     +  F+ PL 
Sbjct: 245 NSDDPWGLQLAERLGDRCWRSSLSEPGAELRMSDLEMTARGVRGRLITPLGEGPFVSPLL 304

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYA 363
           G F + N L A G+ +   +    +LE +E    VPGR E V            + VDYA
Sbjct: 305 GRFNLMNLLQAVGVLVQCQLPLMPLLEAIEGFRGVPGRMERVLLPGADAHALPTVLVDYA 364

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT + LE  L   R  + GR+I VFGCGGDRD+GKRP M  IA  LAD  +VT DNPR+E
Sbjct: 365 HTPDGLENALAASRPFSRGRLICVFGCGGDRDRGKRPQMASIAARLADRVVVTSDNPRTE 424

Query: 424 DPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           DP++I  +++ GIP     + +G+R  AI  AI     +D+++VAGKGHE   I+   +K
Sbjct: 425 DPQRILEDVVAGIPDGTDSLVEGDRAAAIAAAIAAAAPEDLVLVAGKGHEDYQILGT-DK 483

Query: 481 KMSVDCDIIREILGLIL 497
               D +     L   L
Sbjct: 484 VHFDDREEAENALRARL 500


>gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
 gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
          Length = 492

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 203/474 (42%), Positives = 271/474 (57%), Gaps = 19/474 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF          A   ++         T  
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           ++ P     + V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI  R G  
Sbjct: 76  ADLPEATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRE 135

Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G    +++   +   LTTP P+ L + L+ L  +G+T +++EASSHG++Q RLDG+
Sbjct: 136 SASLGTVGIVTNRGAEYGSLTTPDPVTLHETLARLVDEGITDLAMEASSHGIEQRRLDGV 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +L A +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  
Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADA 255

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAA 319
           AG  + + G  G FI L +       Q +T++  GKD+    P            A   A
Sbjct: 256 AGHAIRTTGRGGDFIRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLA 315

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A   D A V   LE L  VPGR E +G  + G    VDYAH   +LE +L  +R  
Sbjct: 316 LATPAGQADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYAHKPEALEHVLSALRPF 374

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            SGR++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG 
Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            E G+R EAIR A+  L   DVLVVAGKGHET  IV         D D +R  +
Sbjct: 435 EEIGDRAEAIRAAVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAI 487


>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
 gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
          Length = 767

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 131/523 (25%), Positives = 236/523 (45%), Gaps = 45/523 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+ +        + I      + +I  +  DSR + AG +FV  VG++     F+
Sbjct: 241 MSLAELLDES-----KVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCVGSES----FL 291

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A  +GA A+V S    ++D          +++V++T   L+  AS  Y    +N+  +
Sbjct: 292 SEADKRGAVAVVASKEIDIEDTLGCKA----LVIVEDTNAVLAALASSFYRHPSKNMSVI 347

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKAL 174
            VTGT GK++    ++ + +  G+ +      S            N  T P  + +   +
Sbjct: 348 GVTGTDGKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATTNPDAVLVQSLM 407

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +   G   + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF
Sbjct: 408 AKMLHNGTEALVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLF 467

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVT 292
             ++       +   D  +     +  N        ++      +H         + QV 
Sbjct: 468 ARMVDPGRHRKVVNIDDPNATFFVQQGNPNVPVVTFAMENTKADVHPLMFELSLFETQVL 527

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++      +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +   
Sbjct: 528 VNTPQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI-DE 586

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   + VD+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+
Sbjct: 587 EQAFGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDV 646

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIR 450
            ++T DNPR+EDP  I  +++ GI   ++      + +                R  A+R
Sbjct: 647 TMLTSDNPRNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVR 706

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            A+ M  + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 707 CAVAMGEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748


>gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
 gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
          Length = 501

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 147/476 (30%), Positives = 227/476 (47%), Gaps = 22/476 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +DSR ++AG  FVA  G   DG  ++ +A+ QGA A++V +        A   S   
Sbjct: 25  DLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAAVLVEADG----LQAFDLSGDS 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS----SF 145
           I  +   +    L A + +       ++LAVTGT+GK++ A ++     +  L+      
Sbjct: 81  IAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTGCA 140

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +    +   +TTP P+ L +A    + QG+   ++EASS G+ +HRLDG K+
Sbjct: 141 LVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLDGSKI 200

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTN  +DH+DYH +  AY+ AK +LF+   P    A++  DDA+   +  R     
Sbjct: 201 RVALFTNFTQDHLDYHGSMDAYWQAKAQLFDW--PGLPAAVVNIDDAHGARLWARLQGRA 258

Query: 265 CRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             V SV  QG      K +         T+   G        L G++ V N L       
Sbjct: 259 MDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLGVLATLR 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---IT 380
            +G+     ++    L  VPGR + +        + VDYAHT ++LE  L+ ++      
Sbjct: 319 CLGLTLEQAVQACADLEPVPGRMQQI-VKPGQPLVAVDYAHTPDALEKALRALQPAARQR 377

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
            G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPRSE PE I  +I+ G+    
Sbjct: 378 QGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPRSEVPESIIDQILAGMQAGQ 437

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               + +R  AI  AI     +DV+++AGKGHE       G +    D    ++ L
Sbjct: 438 ALHVQADRAAAIAQAIARAEARDVVLIAGKGHEDYQETK-GVRHPFSDMAEAQKAL 492


>gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 479

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 185/495 (37%), Positives = 257/495 (51%), Gaps = 23/495 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+                      +  ++ D R +  G +F A VG + +G  FI
Sbjct: 1   MRLAALL-----------DDADWAGPNPVVTGLAIDHRKVAPGTLFGAFVGERFNGEDFI 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+         + A ++             +   N R+  +  A+R + + P   +AV
Sbjct: 50  PDAV--------AAGAVAVVARPDAKVDGAVHVADANPRRAFAHIAARFFHRFPATCVAV 101

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S     +Q+ + +G ++  IG    T S  +    LTTP  +     +S L+ 
Sbjct: 102 TGTNGKTSTVEMTRQLWRMAGFNAASIGTLGITTSVDSASTGLTTPDIVTFLSNMSGLAV 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH + EASSHGLDQ+R +G+ + A +FTNL  DH+DYH T +AY  AKMRLF E++ 
Sbjct: 162 EGVTHAAFEASSHGLDQYRTEGLPVKAAAFTNLSHDHLDYHGTMEAYLAAKMRLFREVVQ 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               AI++ADDA+S  V++ A     RVL+VG  G+ + L         Q + I+     
Sbjct: 222 PGGAAIVWADDAHSAAVIEAARARDVRVLTVGQAGEALRLVSRTPTQLGQLLVIAAGDVT 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G +Q  NALVAAGL IA G D AL L +L +L  V GR E       G  IY
Sbjct: 282 HKVTLPLIGAYQAANALVAAGLVIATGGDVALTLANLARLQPVRGRLERAAIARSGAPIY 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAHT +++E  L  +R   +GR+I+VFG GGDRDQ KRP MG++A   AD+ I+TDDN
Sbjct: 342 VDYAHTPDAIEAALDALRPHATGRLILVFGAGGDRDQAKRPEMGRVAAAKADLLIITDDN 401

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG- 478
           PR EDP  IR  I    PG    G+R  AI  AI      D++ +AGKGHE   IV  G 
Sbjct: 402 PRGEDPAVIRDAIAAAAPGAQVIGDRRAAIAAAIAAARADDIICIAGKGHEQGQIVGRGD 461

Query: 479 --EKKMSVDCDIIRE 491
                   D  + RE
Sbjct: 462 DMRVIPFDDVSVARE 476


>gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
          Length = 515

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 142/504 (28%), Positives = 223/504 (44%), Gaps = 38/504 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+               +      I  +  DSR +  G +FVA  G   DGHL+IPQ
Sbjct: 5   LHDLLRTLC-------DPAHLPRANPAITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI +GA A+V        D +   R   P L   N R  L+  A+  YG     +  + +
Sbjct: 58  AIERGAAAVVYE------DPAWDGRIPVPALRTPNARAALAPLAAAFYGYPGRQMRVVGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++         +  G  +  +G      +   +A D+R +TP    +   L  +
Sbjct: 112 TGTDGKTTTTFLTSVALEAGGAVTGLMGTVDFKIAGRLWANDSRQSTPEAPEVQALLRDM 171

Query: 178 SSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN------- 228
              G  +  VEA+SH L    +RL G        TN+ ++H+D+H T + Y         
Sbjct: 172 VHAGCAYAVVEATSHALSARWNRLAGCAFDIAVLTNVTQEHLDFHGTVEQYRRDKARLFE 231

Query: 229 --AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A+         +   AI+ ADD   +  +  A     R+    +    +  + V +  
Sbjct: 232 MLAEFHDDATPFKQRKIAIVNADDPNHRMFLDAAPPYAERLTYAIHANADVCARNVRSTR 291

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +     ++      D    L G+F V+NAL A  +  A G+  ++ L  LE++  V GR 
Sbjct: 292 DGLMFRVTTPWGAADAHLRLTGDFNVWNALAALTVACAEGVPLSVCLAALERVPGVRGRM 351

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +        + VDYAHT  + E +++ +R +T G++IVVFG  G+RD+ KRP+ G+IA
Sbjct: 352 ERIEMGQ-PFTVLVDYAHTPGAFEKLMRIVRPLTDGQLIVVFGSAGERDRAKRPLQGEIA 410

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNK 458
               D+ ++TD++PR ED E I AEI  G+           +   +R  AIRTA      
Sbjct: 411 GRFCDLVVLTDEDPRLEDREAIIAEIAVGVEAAGKRIGETCLCIPDRAHAIRTAFARARP 470

Query: 459 QDVLVVAGKGHETVHIVTNGEKKM 482
            D++++ GKGHE   I        
Sbjct: 471 GDIVLLLGKGHEGSIIYGTTPMPW 494


>gi|42520747|ref|NP_966662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|42410487|gb|AAS14596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 524

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 167/538 (31%), Positives = 263/538 (48%), Gaps = 67/538 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE------ 54
           MKL++L++                  + +I  V+ +   ++ G++FV +           
Sbjct: 1   MKLRELLHNII-----------DVNFDIEIKGVTCNPNRVKEGYLFVCVSAVSFQRVTLE 49

Query: 55  ----------------DGHLFIPQAI---AQGAEAIV--VSSAYSLQDFSATIRSNTPIL 93
                             H  +   I    +    ++  +     + +       N   +
Sbjct: 50  SRKPACIQIFPTESQYHAHDCVDVVIQGTKKDVIPVLDYLDPENLIANEHTKQLHNKNWI 109

Query: 94  VV----------------DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQI 136
            V                 N ++      SR Y  K P+ + AVTGT+GK+SV  F +QI
Sbjct: 110 PVSATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQI 169

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            Q SG ++  IG   T  +  +++    LTTP    L   L  ++S+ V  +++EASSHG
Sbjct: 170 WQNSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSHG 229

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +DQ+R+ G++  A +FTN  +DH+DYH++   YF AK RLF E+LP+    I+ AD    
Sbjct: 230 IDQYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYFEAKKRLFYEVLPEGETVILNADINEY 289

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             ++K A     +V++ G  G  I L +     N Q +TI +  + ++  FP+ G+FQ Y
Sbjct: 290 HALLKIAEKRSNKVITYGKTGSDITLLEQTPTPNGQYLTIKIGDEIYNMFFPVLGQFQAY 349

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L A G+  + G         + KL   PGR E V         +VDYAHT ++L+  L
Sbjct: 350 NLLCAIGIVTSSG--LNYREISIGKLVSPPGRMEKVQP-----FAFVDYAHTPSALKQAL 402

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +++   + +I++VFGCGG+RD+ KR  MGKIA   AD  I+TDDNPR EDP KIR +I+
Sbjct: 403 LSLKWHFNKKIVLVFGCGGNRDRKKRSEMGKIAQMYADKVIITDDNPRDEDPAKIRHDIL 462

Query: 434 HGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
              P  +E G+R EAI   I++  N+  +L+VAGKGHE   I+ N       D ++I+
Sbjct: 463 LYCPSALEIGDRKEAIEKGIDIAYNEGMILLVAGKGHEKFQIIGNQT-FEFSDVEVIK 519


>gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 501

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 146/511 (28%), Positives = 228/511 (44%), Gaps = 33/511 (6%)

Query: 1   MKLQDLIY----KDFPELINQLSIFPMQWRE------RKINEVSSDSRHIQAGWIFVAIV 50
           M L+DL      +   E++++L        +      R I  V  DSR ++ G ++ A+ 
Sbjct: 1   MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALP 60

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G +  G  F  +A A+GA A++      +           P +VVD+ R  L   A+  Y
Sbjct: 61  GRRHHGADFASEATARGAVAMLSDRPSDI----------VPTVVVDDPRVALGPLAAWAY 110

Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSP 167
           G      ++  VTGT+GK+S    ++     +GL +    G T       +    TTP  
Sbjct: 111 GNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTVRPATRTTPEA 170

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             L ++      +GV  V++E SSHGL +HR+DG +   G FTNL RDH+DYH   +AY+
Sbjct: 171 CELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYY 230

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK RLFE  L + +   I   D      +           S    G  ++   V A   
Sbjct: 231 AAKARLFERDLCERAAVCI---DDDYGRRLAAEVAVPHLTFSARDPGADVYATTVRAQRW 287

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+   G+       + G  QV NA+ A       GID    +  +E L  +PGR E
Sbjct: 288 GSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE 347

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V    +     VDY H +     +   +R++T GRI+VV G  G+RD GKR  +G  A 
Sbjct: 348 RVDVG-QPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLGFTAA 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             A++ +VTD++  S+D   +R          G    +   +R EAI  A+++    D +
Sbjct: 407 RYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTV 466

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AG+GH+   +V +G      D   +R  L
Sbjct: 467 LLAGRGHDPA-LVDDGVATAFDDRAALRNAL 496


>gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 492

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 128/482 (26%), Positives = 224/482 (46%), Gaps = 16/482 (3%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+    Q  E +I  ++ DSR  +   +F  + G + DGH F+  AI  GA A+V S   
Sbjct: 3   LNQLFKQAPEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVHSEEL 62

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQ 135
                            V++    L++ A   Y +  +   +  VTGT+GK S+A  +Q+
Sbjct: 63  ------VHYEEGILYFRVNDVVDTLNVIADLFYAEASYHLQMFGVTGTNGKESIAKIIQE 116

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +      +      + T  +      LTTP+ I L   L  +   G+   ++E SS G++
Sbjct: 117 VLNPDKATGNIGSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSVGVE 176

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  +      FTNL  +H+D+H T Q YF AK + F++ L +++ AI   DD Y  +
Sbjct: 177 QKRVQSVHFDYAIFTNLDHNHLDFHGTMQNYFEAKKKFFDD-LDEKACAITNIDDPYGLK 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +++ +            +     +++     +     + V  +++D    L   F + N 
Sbjct: 236 MVEDSEARVVTYGM--SEEAMYSIRQYRLKKDGTSFCLKVYDQEYDIETNLVSRFNLMNL 293

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A       G+   L+ E ++ L  + G  + +    +   + VD AHT + L  +L+ 
Sbjct: 294 TAAIVALHESGVKMELIQERVKFLTQMEGHMQ-MIQEGQNFNVLVDIAHTVDGLSRVLEY 352

Query: 376 IRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +IT    RIIVV G  G RD+ KR  +G +     D+ I+T+++PR+E P +I  EI 
Sbjct: 353 ATSITPKNCRIIVVNGSVGKRDKIKRQKVGNLMDQYCDMIILTEEDPRNESPREIAEEIA 412

Query: 434 HGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            GI    ++   +R +AIR A+E+ + +D ++V GKG++       G      D  I++E
Sbjct: 413 KGIDKTPYLIISDRYDAIRQALELADPEDTVLVLGKGNQKFMERDIGRCSYQGDVIIVKE 472

Query: 492 IL 493
           +L
Sbjct: 473 VL 474


>gi|300780827|ref|ZP_07090681.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532534|gb|EFK53595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 498

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 158/496 (31%), Positives = 235/496 (47%), Gaps = 25/496 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           ++  E+     +         ++ +S DS  +++G +F A+ G +  G  F   A A  A
Sbjct: 7   ENLAEIAGA-RVENAPESSLSVSAISLDSNAVKSGAMFAALPGTRVHGATF---AHASDA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            A++   A              P+LVV+  R  L   A+ +YG   E+  ++ VTGTSGK
Sbjct: 63  SAVLTDDAGWDILRETGFER--PVLVVERVRDILGDVAAEIYGHPTEHLTVIGVTGTSGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++     +G +   IG T T          LTTP    L +  + + S+GVTHV
Sbjct: 121 TTTTYLLESGLTAAGCAVGLIGTTGTRIKGEDVPTSLTTPEAPKLQELFADMVSRGVTHV 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L   R+DG K  A  FTNL +DH+D+H T + YF AK  LF+        A+
Sbjct: 181 VMEVSSHALVLGRVDGTKFAAAGFTNLSQDHLDFHPTMEDYFEAKAILFDR----AEKAV 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD + +++ +RAH+     +          L  V     +  +T+ + G+D     P
Sbjct: 237 VCIDDEWGQKMTQRAHSPVTVGVHNTSADCTARLDSVTESGAQ-DITVRIGGQDISTRIP 295

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG F + N  +A  L  ++GID  + L+ L+   V PGR E V          VDYAH 
Sbjct: 296 LPGAFNIANTALATALADSVGIDPKVFLQGLDAARV-PGRMERVSVGQ-PFVAVVDYAHK 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             ++   L ++R    GRI VV G GGDRD  KRP+MG  A   AD+ I+TDDNPR+EDP
Sbjct: 354 PAAVAAALDSLREQVDGRIGVVVGAGGDRDHSKRPLMGAEAATRADLVIITDDNPRTEDP 413

Query: 426 EKIRAEIIHGIPGFI--------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             IRA +  G    I        E  +R +AI   +      D ++V GKGHE   I+  
Sbjct: 414 AAIRAAVKQGAESVIDGAATDIREVASRAQAIADLVAWAEPGDAIIVVGKGHEVGQIIGE 473

Query: 478 GEKKMSVDCDIIREIL 493
                  D + +   L
Sbjct: 474 -TTHHFDDREEVAFAL 488


>gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
 gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
          Length = 519

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 146/506 (28%), Positives = 232/506 (45%), Gaps = 36/506 (7%)

Query: 11  FPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E+++ L++         +   ++ DSR +  G +F A  G + +   FI QA+A GA 
Sbjct: 11  IGEILSALNLLVADNVGSVVARVITDDSREVVPGAVFFARSGIQPNIKPFISQALAAGAV 70

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V  + Y+          ++ +L      + +    +  +      I+ +TGT+GK+SV
Sbjct: 71  LVVTEADYADPRVIRVEAVHSLVL------QMVGHVCAVNFDDL--TIIGITGTNGKTSV 122

Query: 130 ASFVQQICQRSGLSSF----QIGPTSTISS-----FAQDNRLTTPSPIYLAKALSYLSSQ 180
           A F+     RSG         IG              Q    TTP  +   +       Q
Sbjct: 123 AQFIAGALSRSGAPHTASIGMIGTLGAGMWSSGLENLQPTANTTPGLLETLRYAVDFIRQ 182

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  +V +E SSH L+Q+RL G+ +    FTNL RDH+DYH T   YF AK +LF      
Sbjct: 183 GARYVVMEVSSHALEQNRLQGLPIRLAVFTNLSRDHLDYHGTMAEYFAAKTKLFAW---P 239

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--------VCAIHNKQQVT 292
              A I   D    +V+  A  A     + G       +          + A+ N   + 
Sbjct: 240 GLRAGIINFDEAQADVLFEALGATADCWAYGLGDPDWRVADCQHVRVTSITALPNGIDIQ 299

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     +      L G F   N + A    +A+G+     ++ L++    PGR + + T 
Sbjct: 300 VRTPLGEARLQPSLVGLFNGANIMAALAAVLALGMPLETAIKALDQSTPPPGRMQ-MITL 358

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             G R  VDYAHT ++L+ +L+ +R      G+II VFGCGGDRD+GKRP+M   A  LA
Sbjct: 359 PSGARALVDYAHTPDALDQVLRALRDHRDAAGKIICVFGCGGDRDRGKRPLMAATAERLA 418

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           D  ++T DNPRSE P+ I A++  G+        + +R  AI +A+      D +++AGK
Sbjct: 419 DQIVMTADNPRSEAPQAIIADMRGGLASPDTASVELDRRAAIESALMQAKAGDWVLIAGK 478

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           GHET   +  G++    D  ++R+ +
Sbjct: 479 GHETTQEIQ-GQRLPFDDAAVVRDWI 503


>gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 519

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 138/508 (27%), Positives = 217/508 (42%), Gaps = 55/508 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    PE +  L              + +DSR ++ G IF+A  G   DG + + +A+A+
Sbjct: 15  LLGSVPEALEWLRAHAPHGA------LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A +V                   L   + +    L A+  +G   +   ++AVTGT+
Sbjct: 69  GAAACLVEREGVEAFR--FGAEGVAALR--DLKAATGLLAADWFGMPTQRLDVVAVTGTN 124

Query: 125 GKSSVASFVQQICQ-------RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           GK+S   ++             +      IG     +    +   LTTP P+ L +A + 
Sbjct: 125 GKTSTTWWLADALNQLAGSGLAAHGGCGLIGTLGVGVPPELECTGLTTPDPVRLQQAFAG 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+   ++EASS GL +HRL G++L    FTN  +DH+DYH    AY+ AK  LF+ 
Sbjct: 185 FVANGLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDW 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
             P    A++  DD    E+          + +    G      + +       + T++ 
Sbjct: 245 --PGLQAAVVNIDDPRGGELADTLAQRPIDLWTTSITGPARLQARDITWGEGGLRFTVAE 302

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +       + G + ++N L       A+GI     L    +L  VPGR E +    + 
Sbjct: 303 GVQAHVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPDQP 362

Query: 356 GRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             + VDYAHT ++LE  L+ +R       GR+  VFGCGG+RD+ KRP+MG+IA   AD 
Sbjct: 363 L-VAVDYAHTPDALEQALQALRPVAEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADA 421

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ------------- 459
            IVT DNPR+E P  I  EI+ G                       +             
Sbjct: 422 VIVTSDNPRNEAPGAILHEILLGTVAGTTV------------QAEPERDAAIARAIAEAD 469

Query: 460 --DVLVVAGKGHETVHIVTNGEKKMSVD 485
             DV+++AGKGHE     + G ++   D
Sbjct: 470 GRDVVLIAGKGHEDYQE-SAGVRRPFSD 496


>gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
 gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
          Length = 515

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 150/501 (29%), Positives = 220/501 (43%), Gaps = 35/501 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           ++   E +N L     +        + +D+R + AG  F A   +  D   FI  A+ +G
Sbjct: 11  HRQIAEALNWLQAHLQRGA-----HLHADTRSLTAGDAFFAYAVDGADNRAFIDGALERG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSG 125
           A A++V          A+       L V    +     AS  YG   +++L V  TGT+G
Sbjct: 66  AAAVLVQPEGFSGAIDAS-----TTLAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+S + ++       G     IG   T           TTP    L ++L+ L   G   
Sbjct: 121 KTSCSQWISAALTALGKRCAIIGTLGTGLPGQLVHTGFTTPDAPQLQRSLAQLRDAGAKA 180

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++E SSH L Q R++G       FTNL +DH+DYH T +AY  AK RLF      E  A
Sbjct: 181 VAMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFAW---PELRA 237

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA----------IHNKQQVTIS 294
            +   D  +   +  +     R ++ G         +  A                   +
Sbjct: 238 AVINRDDAAGRRLLASTQGHARTIAYGLDSAQQSAPQADASLLASNVRATPTGTAFHLST 297

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +  + +      G F V N L   G  +A  I     L  L KL  V GR + +G   +
Sbjct: 298 SDWGNAEVEVQTLGAFNVSNLLGVLGALLAAEIPFDAALAELAKLESVNGRMQRLGGRLQ 357

Query: 355 GGRI--YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  +DYAHT ++LE  L+ +R +     G +I +FGCGGDRD  KRP+MG IA  +
Sbjct: 358 NDEPLVVIDYAHTPDALEKTLEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKM 417

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD  +VT DNPRSEDP+ I  +I  G+          +R  AI  AI    ++DV+V+AG
Sbjct: 418 ADGVVVTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRGAAREDVIVLAG 477

Query: 467 KGHETVHIVTNGEKKMSVDCD 487
           KGHE    +  G+K+   D D
Sbjct: 478 KGHEATQEIM-GKKRAFSDQD 497


>gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
 gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
          Length = 488

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 226/488 (46%), Gaps = 16/488 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L+       + KI  + SDSR+++   IF  I G   DGH ++  A+ QGA+ IV S
Sbjct: 1   MKRLNELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHS 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
              +                V+NT   L+  ++  Y      +  + VTG+SGK+ VAS 
Sbjct: 61  KDLNYYH------DKIIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++    +   S +    +   +   ++   TTP  +YL + L  ++  GV  V++EASSH
Sbjct: 115 IKDAMAKYCSSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSH 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL   R+DGI       TN+G +H+D+H T++ Y  AK +LFE + P     +       
Sbjct: 175 GLALGRVDGINFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNS---DD 231

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              +  + +  G  +         I  K +    +  +  IS +G  F    P+   F +
Sbjct: 232 LNFMTLKNNTQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNI 291

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L   G+ IA+G D  +V++ +E +  + GR E + T  +   + +DY    ++ E I
Sbjct: 292 YNVLALTGVLIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQ-FAVIIDYCQHISNYEAI 350

Query: 373 LKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            + +  +    GRII V G  G R+   R  +G++A    D  I+T  + R ED  +I  
Sbjct: 351 FEYVDGVRQGHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICK 410

Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            I   I     +   +R  AI  AIE+  K D++++ GKGHE    +  G+     D  I
Sbjct: 411 TIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQI 470

Query: 489 IREILGLI 496
           ++E L  I
Sbjct: 471 VKEALERI 478


>gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te
           ligase mure [Rhodococcus equi 103S]
 gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
           6-diaminopimelate ligase MurE [Rhodococcus equi 103S]
          Length = 501

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 146/511 (28%), Positives = 228/511 (44%), Gaps = 33/511 (6%)

Query: 1   MKLQDLIY----KDFPELINQLSIFPMQWRE------RKINEVSSDSRHIQAGWIFVAIV 50
           M L+DL      +   E++++L        +      R I  V  DSR ++ G ++ A+ 
Sbjct: 1   MDLEDLWTPVSPRTLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALP 60

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G +  G  F  +A A+GA A++      +           P +VVD+ R  L   A+  Y
Sbjct: 61  GRRHHGADFASEASARGAVAMLSDRPSDI----------VPTVVVDDPRVALGPLAAWAY 110

Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSP 167
           G      ++  VTGT+GK+S    ++     +GL +    G T      A+    TTP  
Sbjct: 111 GNPSTAFDLYGVTGTNGKTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTARPATRTTPEA 170

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             L ++      +GV  V++E SSHGL +HR+DG +   G FTNL RDH+DYH   +AY+
Sbjct: 171 CELQQSFVEFVEEGVDAVAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYY 230

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK RLF   L + +   I   D      +           S    G  ++   V A   
Sbjct: 231 TAKARLFGRDLCERAAVCI---DDDYGRRLAGEVAVPHLTFSARDPGADVYATTVRAQRW 287

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+   G+       + G  QV NA+ A       GID    +  +E L  +PGR E
Sbjct: 288 GSTFTLHHRGERVPVRLRVLGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLE 347

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V    +     VDY H +     +   +R++T GRI+VV G  G+RD GKR  +G  A 
Sbjct: 348 RVDVG-QPFLALVDYVHNTAGQHRLFPYLRSVTPGRIVVVLGATGERDPGKRAPLGFTAA 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             A++ +VTD++  S+D   +R          G    +   +R EAI  A+++    D +
Sbjct: 407 RYAEVVVVTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTV 466

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AG+GH+   +V +G      D   +R  L
Sbjct: 467 LLAGRGHDPA-LVDDGVATAFDDRAALRNAL 496


>gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 498

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 131/504 (25%), Positives = 220/504 (43%), Gaps = 28/504 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + D+I     ++       P       +N +S DSR +  G +FVAI G   DGH +I
Sbjct: 1   MNILDIIDN--IKVKTIYGNLPES-----VNNISQDSRKVGEGDVFVAIKGYTVDGHNYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENIL 118
            + I QGA  ++ S       +      N  ++V+      K  S+ A ++      + +
Sbjct: 54  EKVIEQGAALVIASR------YENYNVENCAVIVIKEHEIEKVASMIAKKINEGSNVHTV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD--NRLTTPSPIYLAKALSY 176
           AVTGT+GK+S+++ V  + +  G SS  IG      + A+      TTP  + L   +  
Sbjct: 108 AVTGTNGKTSISTLVHNMLRTLGESSAYIGTNGFGKNDAEPVYFGNTTPDVVTLHNQIGE 167

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLF 234
           L    + +++ EASSH +   R+  + +    FTNL  +H+D+H   Q Y    + +   
Sbjct: 168 LRRDNIKNLAFEASSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFST 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH----NKQQ 290
                 E+   +   D    +V+ +         S+       +   +         K  
Sbjct: 228 LGNNLSEAKYGVLNKDDSYYKVISKCLYQQEINYSIVDNTADFYAYNIKQYKEDKVYKTS 287

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T++     F+      G+F V N L A       G     ++  L KL  + GR E +G
Sbjct: 288 FTLNSPEGTFECTTNYIGDFMVSNVLAALIAVWVKGYSVEQLVAILPKLGALYGRMEIIG 347

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +     I  D+AHT +  E +L+  R +  G R ++V G GG RD  K P++G I  + 
Sbjct: 348 -DDLPIDIISDFAHTPDGYEKLLEATREMRKGKRTLLVTGMGGGRDISKGPLIGDIISE- 405

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           AD  ++T D+PR ED E +   I  G+    + +   R +A++  IE+    DV+++A K
Sbjct: 406 ADYVVITTDSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSEPGDVVILASK 465

Query: 468 GHETVHIVTNGEKKMSVDCDIIRE 491
           G E   I+  G+K    D  +  E
Sbjct: 466 GREDYEILQGGKKVWHSDPIVAVE 489


>gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 488

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 226/488 (46%), Gaps = 16/488 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L+       + KI  + SDSR+++   IF  I G   DGH ++  A+ QGA+ IV S
Sbjct: 1   MKRLNELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHS 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
              +                V+NT   L+  ++  Y      +  + VTG+SGK+ VAS 
Sbjct: 61  KNLNYYH------DKIIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++    +   S +    +   +   ++   TTP  +YL + L  ++  GV  V++EASSH
Sbjct: 115 IKDAMAKYCSSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSH 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL   R+DGI       TN+G +H+D+H T++ Y  AK +LFE + P     +       
Sbjct: 175 GLALGRVDGINFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNS---DD 231

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              +  + +  G  +         I  K +    +  +  IS +G  F    P+   F +
Sbjct: 232 LNFMTLKNNTQGRILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNI 291

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L   G+ IA+G D  +V++ +E +  + GR E + T  +   + +DY    ++ E I
Sbjct: 292 YNVLALTGVLIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQ-FAVIIDYCQHISNYEAI 350

Query: 373 LKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            + +  +    GRII V G  G R+   R  +G++A    D  I+T  + R ED  +I  
Sbjct: 351 FEYVDGVRQGHGRIIAVLGAPGKRNYKLRKELGQLANRYLDHVILTQLDDRGEDVYEICK 410

Query: 431 EIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            I   I     +   +R  AI  AIE+  K D++++ GKGHE    +  G+     D  I
Sbjct: 411 TIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILGKGHEKFISLDVGQVDYPGDSQI 470

Query: 489 IREILGLI 496
           ++E L  I
Sbjct: 471 VKEALERI 478


>gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
          Length = 519

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 141/508 (27%), Positives = 217/508 (42%), Gaps = 55/508 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    PE +  L     Q        + +DSR ++ G IF+A  G   DG + + +A+A+
Sbjct: 15  LLGSVPEALEWLRAHAPQGA------LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A +V                   L   + +    L A+  +G   +   ++AVTGT+
Sbjct: 69  GAAACLVEREGVEAFR--FGAEGVAALR--DLKAATGLLAADWFGMPTQRLDVVAVTGTN 124

Query: 125 GKSSVASFVQQICQ-------RSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           GK+S   ++             +      IG     +    Q   LTTP P+ L +A + 
Sbjct: 125 GKTSTTWWIADALNLLAGSGLATHGGCGLIGTLGVGVPPSLQGTGLTTPDPVRLQQAFAG 184

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+   ++EASS GL +HRL G++L    FTN  +DH+DYH    AY+ AK  LF+ 
Sbjct: 185 FVANGLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDW 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISV 295
             P    A++  DD    E+          + +    G      + V       + T++ 
Sbjct: 245 --PGLQAAVVNIDDPRGGELSDTLAQRPIDLWTTSITGPARLQARDVTWGEGGLRFTVAE 302

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +       + G + ++N L       A+GI     L    +L  VPGR E +    + 
Sbjct: 303 GVQAHVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPGQP 362

Query: 356 GRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             + VDYAHT ++LE  L+ +R       GR+  VFGCGG+RD+ KRP+MG+IA   AD 
Sbjct: 363 L-VAVDYAHTPDALEQALQALRPVAEQRGGRLWCVFGCGGNRDRAKRPLMGRIAQQRADA 421

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ------------- 459
            IVT DNPR+E P  I  EI+ G                       +             
Sbjct: 422 VIVTSDNPRNEAPGAILHEILLGTVAGTTV------------QAEPERDAAIARAIADAD 469

Query: 460 --DVLVVAGKGHETVHIVTNGEKKMSVD 485
             DV+++AGKGHE       G ++   D
Sbjct: 470 GRDVVLIAGKGHEDYQETA-GVRRPFSD 496


>gi|33866222|ref|NP_897781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 8102]
 gi|46576934|sp|Q7U5L3|MURE_SYNPX RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639197|emb|CAE08205.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. WH
           8102]
          Length = 500

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 154/504 (30%), Positives = 241/504 (47%), Gaps = 23/504 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+     EL       P    + ++  ++SDSR +  G +F+ + G + DG  F  Q
Sbjct: 5   LHALLRDVGLEL-------PAGLADPQLTSITSDSRLVGEGSLFLGLPGERFDGGRFWRQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPENI--LA 119
           A+  GA A V+  + + +   A   ++ P+LV+ +   + +   A+  +G     +  + 
Sbjct: 58  ALEAGAAAAVIGPSAAQELPPA---ADQPVLVLREPVARSIGELAASYWGHPCRRMALIG 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    ++ +  R G  +   G   +    ++     TT     L   L+  +
Sbjct: 115 VTGTNGKTTTTHLIEHLAVRVGQPTALFGTLVNRWPGYSITATHTTSVADRLQAQLAEAA 174

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S G    ++E SSH L Q R+ G +     FTNL +DH+DYH T ++Y+ AK RLF   L
Sbjct: 175 SAGSQLAAMEVSSHALVQERVAGCRFAGAVFTNLTQDHLDYHGTMESYYEAKARLFTAPL 234

Query: 239 -PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              + P+ +   D      +       C   S+G     + +  +       +  +    
Sbjct: 235 LDGDGPSAVVNGDDPWGSRLAEQLGGRCWRSSLGDPQAELQMVDLEMTGQGVRGRLLSPA 294

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355
               F  PL G F + N L A G+ +  G+  A +LE +     VPGR E V  N     
Sbjct: 295 GSGAFCSPLLGRFNLMNLLQAVGVLLQRGLPLAPLLEAVGSFRGVPGRMERVVVNGAESA 354

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VDYAHT + LE  L   R  T GR++ VFGCGGDRD+GKRP M  IA  LAD  
Sbjct: 355 ALPTVLVDYAHTPDGLENALAASRPFTDGRLVCVFGCGGDRDRGKRPQMAAIAARLADRV 414

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +VT DNPR+EDP++I A+++ G+P       + +R  AI  AI   +  D++++AGKGHE
Sbjct: 415 VVTSDNPRTEDPDQIIADVVAGMPSGTDLSVERDRATAIAEAIADASAADLVLIAGKGHE 474

Query: 471 TVHIVTNGEKKMSVDCDIIREILG 494
              I+   EK    D +   + L 
Sbjct: 475 DYQILGT-EKVHFDDREEAEQALR 497


>gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
 gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
          Length = 506

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 133/512 (25%), Positives = 223/512 (43%), Gaps = 28/512 (5%)

Query: 1   MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M + + ++     +L            E +I  ++ DSR + + ++F A+ G   DG  F
Sbjct: 1   MNMNKKMLNNVLSKLDKNFVKEIKGSCEVEILGLTYDSRCVLSHFVFFALPGLHFDGQEF 60

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPE-- 115
           I  AI QG+  IV ++  +  D       N   + +D  N +KF+S FA   Y +  +  
Sbjct: 61  INSAIEQGSNVIVHTNDINFYD------PNVTYIKIDSCNIKKFMSNFAHIFYNEPSKNL 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLA 171
            I+ VTGT GKSSV  ++  + +  G+    I        + +      R +TP    + 
Sbjct: 115 KIIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIH 174

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             LS +    V +  VE++SHGLD    RL  I       TN+  +H+++H T Q Y NA
Sbjct: 175 LVLSKMVENNVEYAIVESTSHGLDIRTSRLIDIAYFVAVLTNVSHEHLEFHGTMQHYLNA 234

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K+ LF          II  DD      +           S+  +     + K+       
Sbjct: 235 KLNLFSSADANGGFGIINMDDKNFSTFLN--TINRAYTYSLENKNADFFVSKINEQMGFT 292

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEF 348
           +     +   +D    L G F V N + A  +    + +D + +++ L  +  + GR + 
Sbjct: 293 EFEFYHKNVKYDARVNLTGSFNVENVMAALIVVSQVMNVDVSELIDKLVNIEGLFGRMQG 352

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V        + +DYAHT  +   I    + ++  R+I VFG  G+RD  KR + G+IA  
Sbjct: 353 VDFGQ-DFSLIIDYAHTPGAFLKIFPIFKRLSKNRLISVFGSAGERDVLKRKLQGEIADR 411

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVL 462
            +DI I+ D++PR ED  +I  +I  GI             +R  AI  AI + +  D++
Sbjct: 412 YSDIIILCDEDPRGEDSMQIIRDIAEGISGKTLNRDLFFIPDRKSAIEKAINIAHTDDLV 471

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           V  GKGHE   I  +       +  ++++I+ 
Sbjct: 472 VTLGKGHENSIIYKD-RSIFWDEQAVVKDIIS 502


>gi|240254313|ref|NP_176555.4| MURE; ATP binding / acid-amino acid ligase/ ligase [Arabidopsis
           thaliana]
 gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
           [Arabidopsis thaliana]
          Length = 772

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 130/520 (25%), Positives = 236/520 (45%), Gaps = 43/520 (8%)

Query: 7   IYKDFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
                 EL+++  + P+      + +I  +  DSR + AG +FV  +G+      F+ +A
Sbjct: 239 FKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGS----ENFLSEA 294

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
             +GA A+V S    ++D          +++V++T   L+  AS  Y    +N+  + VT
Sbjct: 295 DKRGAVAVVASKEIDIEDTLGCRA----LVIVEDTNAVLAALASSFYRHPSKNMSVIGVT 350

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYL 177
           GT GK++    ++ + +  G+ +      S            N    P  + +   ++ +
Sbjct: 351 GTDGKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKM 410

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF  +
Sbjct: 411 LHNGTESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRM 470

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +  E    +   D  +     +  N        ++      +H  K      + QV ++ 
Sbjct: 471 VDPERHRKVVNIDDPNAAFFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNT 530

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +    + 
Sbjct: 531 PQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI-DEEQA 589

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VD+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+ ++
Sbjct: 590 FGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTML 649

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIRTAI 453
           T DNPR+EDP  I  +++ GI   ++      + +                R  A+R A+
Sbjct: 650 TSDNPRNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAV 709

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            M  + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 710 AMGEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748


>gi|19553363|ref|NP_601365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62391002|ref|YP_226404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|145296125|ref|YP_001138946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum R]
 gi|41326341|emb|CAF20503.1| PROBABLE UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846045|dbj|BAF55044.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 521

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 146/505 (28%), Positives = 210/505 (41%), Gaps = 20/505 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61
           L  LI          +    +   E+ I  +  DS  +  +  IF A+ G +  G  F  
Sbjct: 8   LTKLIDGILKGSAQGVPAHAVG--EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAG 65

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
              A  A AI+  +A    +         P++VVD+ R  L   +S +YG   ++   + 
Sbjct: 66  TDNAAKAVAILTDAAG--LEVLNEAGETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIG 123

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGTSGK++ +  +++    +G     IG T T         +LTTP    L    + + 
Sbjct: 124 VTGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMR 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GVTHV +E SSH L   R+ G      +FTNL +DH+D+H T   YF+AK   F    
Sbjct: 184 DHGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADS 243

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P  +   +   D    + M         V ++G +  F       +    Q   I+    
Sbjct: 244 PLVADKQVVCVDDSWGQRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSN 303

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               +               A    A                 VPGR E +    +    
Sbjct: 304 QSYQVELALPGAFNVANATLAFAAAARVGVDGEAFARGMSKVAVPGRMERI-DEGQDFLA 362

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   ++  +L  +RT   GR+ VV G GGDRD  KR  MG+++   AD+ IVTDD
Sbjct: 363 VVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDD 422

Query: 419 NPRSEDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           NPRSE P  IRA +  G              +E G+R EAIR  +E     D +VVAGKG
Sbjct: 423 NPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKG 482

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   +V  G      D + +R  L
Sbjct: 483 HEVGQLVA-GVTHHFDDREEVRAAL 506


>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51679 [Arabidopsis
           thaliana]
          Length = 767

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 130/520 (25%), Positives = 236/520 (45%), Gaps = 43/520 (8%)

Query: 7   IYKDFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
                 EL+++  + P+      + +I  +  DSR + AG +FV  +G+      F+ +A
Sbjct: 239 FKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGS----ENFLSEA 294

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
             +GA A+V S    ++D          +++V++T   L+  AS  Y    +N+  + VT
Sbjct: 295 DKRGAVAVVASKEIDIEDTLGCRA----LVIVEDTNAVLAALASSFYRHPSKNMSVIGVT 350

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYL 177
           GT GK++    ++ + +  G+ +      S            N    P  + +   ++ +
Sbjct: 351 GTDGKTTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKM 410

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +EAS   L   + D +      FTNL R++ D+  T + Y +A+ +LF  +
Sbjct: 411 LHNGTESLVMEASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRM 470

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +  E    +   D  +     +  N        ++      +H  K      + QV ++ 
Sbjct: 471 VDPERHRKVVNIDDPNAAFFVQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNT 530

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +    + 
Sbjct: 531 PQGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI-DEEQA 589

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VD+A+T + L  +L +IR +   RII V GC G+ ++GKRP+M KIA + +D+ ++
Sbjct: 590 FGVIVDHANTPDGLSRLLDSIRELKPRRIITVIGCEGENERGKRPLMTKIATEKSDVTML 649

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIRTAI 453
           T DNPR+EDP  I  +++ GI   ++      + +                R  A+R A+
Sbjct: 650 TSDNPRNEDPLDILDDMLSGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAV 709

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            M  + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 710 AMGEEGDMVVVAGKGHEAYQ-LEGEKKEFYDDREECREAL 748


>gi|30316061|sp|Q8NNN0|MURE_CORGL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21324933|dbj|BAB99556.1| UDP-N-acetylmuramyl tripeptide synthase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 517

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 146/505 (28%), Positives = 210/505 (41%), Gaps = 20/505 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61
           L  LI          +    +   E+ I  +  DS  +  +  IF A+ G +  G  F  
Sbjct: 4   LTKLIDGILKGSAQGVPAHAVG--EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAG 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
              A  A AI+  +A    +         P++VVD+ R  L   +S +YG   ++   + 
Sbjct: 62  TDNAAKAVAILTDAAG--LEVLNEAGETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIG 119

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
           VTGTSGK++ +  +++    +G     IG T T         +LTTP    L    + + 
Sbjct: 120 VTGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMR 179

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GVTHV +E SSH L   R+ G      +FTNL +DH+D+H T   YF+AK   F    
Sbjct: 180 DHGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADS 239

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P  +   +   D    + M         V ++G +  F       +    Q   I+    
Sbjct: 240 PLVADKQVVCVDDSWGQRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSN 299

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               +               A    A                 VPGR E +    +    
Sbjct: 300 QSYQVELALPGAFNVANATLAFAAAARVGVDGEAFARGMSKVAVPGRMERI-DEGQDFLA 358

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAH   ++  +L  +RT   GR+ VV G GGDRD  KR  MG+++   AD+ IVTDD
Sbjct: 359 VVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDSTKRGPMGQLSAQRADLVIVTDD 418

Query: 419 NPRSEDPEKIRAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           NPRSE P  IRA +  G              +E G+R EAIR  +E     D +VVAGKG
Sbjct: 419 NPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKG 478

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   +V  G      D + +R  L
Sbjct: 479 HEVGQLVA-GVTHHFDDREEVRAAL 502


>gi|108800227|ref|YP_640424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119869355|ref|YP_939307.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
 gi|108770646|gb|ABG09368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119695444|gb|ABL92517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
          Length = 508

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 158/509 (31%), Positives = 229/509 (44%), Gaps = 21/509 (4%)

Query: 1   MKLQDL-----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MKL+             E +  +        + ++  V+   +    G +F A+ G+   
Sbjct: 3   MKLRPSHPVGHALGALAEQVQAVPAPGFPVPDIRVTGVTLRGQDALPGDLFAALPGSSAH 62

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F+  A+A GA A++  +A ++   +  +    P+LV  + R  L   AS +YG   +
Sbjct: 63  GARFVADAVAAGAVAVLTDAAGAVMLGADPV---VPVLVHPDPRAVLGAVASTVYGHPSQ 119

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAK 172
              ++ VTGTSGK++    V+   + +G  +  IG          Q + LTTP    L  
Sbjct: 120 HLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQA 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+ +  QGV  V +E SSH L   R+DG+   AG FTNL RDH+D+H T + YF+AK  
Sbjct: 180 LLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAG 239

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF+      +   +   D  +   M         V + G    +            Q+  
Sbjct: 240 LFDPQSRTRAELAVVCVDDDAGRAMAIRAGRAVTVSASGRPADWRAEDVRAVEAGAQEFV 299

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                         LPG + V N ++AA L  A+ +        L    V PGR E V  
Sbjct: 300 AVDPAGVHHGLRIALPGHYNVANCVLAAALLDAVDVSPEQAAPGLRTATV-PGRLEAVDR 358

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                   VDYAH   +L  +L+ +R    GRI VVFG GG+RD GKR  MG++A +LAD
Sbjct: 359 GQ-DFLALVDYAHKPGALRAVLETLRGQGKGRIAVVFGAGGNRDAGKREPMGRVAAELAD 417

Query: 412 IAIVTDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + +VTDDNPR EDP  IR      A    G    +E G+R EAI  A+      DV++VA
Sbjct: 418 LVVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEIGDRREAIAHAVRWARPGDVVLVA 477

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILG 494
           GKGHET      G      D   + E+L 
Sbjct: 478 GKGHETGQT-AAGRTHPFDDRVELAELLE 505


>gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
 gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
          Length = 518

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 147/480 (30%), Positives = 215/480 (44%), Gaps = 33/480 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG +F A   +  D H FI  AI +GA A++V           +      
Sbjct: 30  HLHADTRSLAAGDVFFAYAVDGADNHPFIEGAIERGAAAVLVQPEGFSGAIDPSNT---- 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  Y    +++L   +TGT+GK+S + ++       G     IG 
Sbjct: 86  -LAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T           TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYHQT +AY  AK RLF      E  A +   D  +   +  +     R +
Sbjct: 205 FTNLTQDHLDYHQTFEAYEAAKARLFAW---PELRAAVINRDDAAGRRLLASTQGHARTI 261

Query: 269 SVGYQGKFIHLKK-------------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + G   +   L+                          + E  D +      G F V N 
Sbjct: 262 AYGLDSEQGALQDAPRADALLLASNVRATATGTAFHLSTSEWGDAEVEVQTLGAFNVSNL 321

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMIL 373
           L   G  +A  +     L  L KL  V GR + +G   +       +DYAHT ++LE  L
Sbjct: 322 LGVLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTL 381

Query: 374 KNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +R +     G +I +FGCGGDRD  KRP+MG IA  +AD  ++T DNPRSEDP+ I  
Sbjct: 382 EALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVLTSDNPRSEDPQSIIE 441

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 442 QIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 500


>gi|257056722|ref|YP_003134554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586594|gb|ACU97727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 524

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 239/499 (47%), Gaps = 20/499 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +         +L   P      ++   +  ++H+  G +F A+ G +  G  F   A+A 
Sbjct: 28  LTTLVARADARLVADPAVAESVRVTGATLRAQHVLPGDLFAALPGARAHGADFTADAVAG 87

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++     + +   A   S  P+L+  + R  L   A+ +YG+      +L +TGTS
Sbjct: 88  GAVAVLTDEEGASR--PAVRESGLPVLIHPDPRGVLGSVAAWIYGEPSLTLSVLGITGTS 145

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ + FV+   + +G  +  IG   T   S    +  TTP    L    + +  +GVT
Sbjct: 146 GKTTTSYFVESGLRAAGYHTGLIGTVETRIGSERLASAFTTPEAPDLQALFADMVERGVT 205

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           HV++E SSH L   R++G +   G+FTNL +DH+D+H+  + YF+AK  LF+     E  
Sbjct: 206 HVAMEVSSHALALGRVNGTRFTVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDGRSTHEIV 265

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +    D+   + +                G       +     +     + +G+    +
Sbjct: 266 VV----DSAWGQALVTPRTVTVSTEPDSDAGWRATDITLTPGGEQSFTLHAPDGRKAQAV 321

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPGEF V NA++AA +   +G+D   VLE L  + V PGR E V    +     VDYA
Sbjct: 322 LPLPGEFNVANAVLAAAILDTVGVDLDAVLEGLATVEV-PGRMERV-YLGQPFTAVVDYA 379

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   ++   L+ +R  T GR+I V G GGDRD  KRP+MG+ A   +D+ IVTDDNPRSE
Sbjct: 380 HKPAAVTQALRALRARTEGRLITVIGSGGDRDTAKRPMMGEAAARGSDLVIVTDDNPRSE 439

Query: 424 DPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           DP  IR  I+ G            +E G+R EAI  A+E     DV+ VAGKGHE+   V
Sbjct: 440 DPAAIREAILAGARAVGPAEGCEVLEIGDRREAIAAAVERAEAGDVVFVAGKGHESGQEV 499

Query: 476 TNGEKKMSVDCDIIREILG 494
             G      D D +   + 
Sbjct: 500 A-GVVHPFSDRDELEAAIR 517


>gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 528

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 148/479 (30%), Positives = 227/479 (47%), Gaps = 21/479 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS DS     G +FV + G    G  F  +A+  GA A++  +  +L      +   
Sbjct: 47  ILGVSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGALIAHE--VAPG 104

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           TP+LV D+ R  +   ++ +Y      ++  AVTGT+GK++ + F+  I           
Sbjct: 105 TPVLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTSYFLDAILSAHVGGCMVA 164

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G     +   + ++  TT     L + ++      V   S+EASSH +  HRLDG+ +  
Sbjct: 165 GTVELRVGERSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGVVVDV 224

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL RDH+D+H+T + Y  AK RLF     +        DD +   +  +A     R
Sbjct: 225 AGFTNLQRDHLDFHKTMEGYLEAKARLFTPEHARRGVI--CVDDQWGAALAAQAPIEVDR 282

Query: 267 VLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLC 322
           V +         ++    V    +    T+     +  +   PLPG   V NA +A  + 
Sbjct: 283 VRAYPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMA 342

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-IYVDYAHTSNSLEMILKNIRTITS 381
           I  G+ +A     L   H +PGR + +           VD+AHT  ++++ LK +R IT 
Sbjct: 343 IRAGVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMDLALKAVRPITP 402

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
           GR+IVVFG  GDRDQGKRP++G++   LAD+ +VTD+NPRSEDP  IR  I+ GI     
Sbjct: 403 GRLIVVFGSDGDRDQGKRPMLGEVCARLADVLVVTDENPRSEDPRLIRNAILDGIRTVRP 462

Query: 437 --PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 E    R +A+R  +E+    D ++V GKGHE    +  GE     D  ++ E 
Sbjct: 463 GLEDVEEVTTWRGDAVRRGVELCGPDDTVIVTGKGHEPFLEMA-GEFIRYNDAPVMAEA 520


>gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
 gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
          Length = 501

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 147/476 (30%), Positives = 228/476 (47%), Gaps = 22/476 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           ++ +DSR ++AG  FVA  G   DG  ++ +A+ QGA A++V +        A   S   
Sbjct: 25  DLQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQGAAALLVEADG----LQAFDLSGDS 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS----SF 145
           I  +   +    L A + +       ++LAVTGT+GK++ A ++     +  L+      
Sbjct: 81  IAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTGCA 140

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G     +    +   +TTP P+ L +A    + QG+   ++EASS G+ +HRLDG K+
Sbjct: 141 LVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLDGSKI 200

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTN  +DH+DYH +  AY+ AK +LF+   P    A++  DDA+   +  R     
Sbjct: 201 RVALFTNFTQDHLDYHGSMDAYWQAKAQLFDW--PGLPAAVVNIDDAHGARLWARLQGRA 258

Query: 265 CRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             V SV  QG      K +         T+   G        L G++ V N L       
Sbjct: 259 MDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLGVLATLR 318

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---IT 380
            +G+     ++    L  VPGR + +        + VDYAHT ++LE  L+ ++      
Sbjct: 319 CLGLTLEQAVQACADLEPVPGRMQQI-VKPGQPLVAVDYAHTPDALEKALRALQPAARQR 377

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---P 437
            G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPRSE PE I  +I+ G+    
Sbjct: 378 QGKLWCVFGCGGDRDNSKRPLMGQAAQAHADGVFVTSDNPRSEVPESIIDQILAGMQAGQ 437

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               + +R  AI  AI   + +DV+++AGKGHE       G +    D    ++ L
Sbjct: 438 ALHVQADRAAAIAQAIARADARDVVLIAGKGHEDYQETK-GVRHPFSDMAEAQKAL 492


>gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 539

 Score =  255 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 136/479 (28%), Positives = 214/479 (44%), Gaps = 20/479 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+  S   + GWIFVAI G  + G  F   AI  GA  I+       + F    R  
Sbjct: 58  VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLILTDEVGRREAFE--RRLG 115

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P++ V N R  + L    +Y         +AVTGT+GK++ +  ++         +   
Sbjct: 116 VPVVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLC 175

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T +   + +   TT     +A+ L+           +E S+H L  +R+DGI    
Sbjct: 176 GTVETSVGPVSFEAVRTTAEAPVVARFLAATDQYHCGAAVIELSAHALSLNRVDGIVFDV 235

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +FTNL  DH+DY+   + YF AK  LF     +        DD + + +   A      
Sbjct: 236 AAFTNLQHDHLDYYGDMETYFAAKALLFTPEHSRRGVV--CVDDEWGRRLADHATVPVTT 293

Query: 267 VLSVGYQGKFIHLKKV---CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           V ++ ++     ++ V    +I       +S +G       P+ G+  V N  VA    +
Sbjct: 294 VSALTHEAADWQVRNVTPDKSIGRTVFTLVSPDGSPHRVAMPILGDVNVQNTAVAIVSAV 353

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           ++G+     +  +E    +PGR E    T      + VDYAHT  +LE  L++ R +T+G
Sbjct: 354 SLGVSLEDAISSVENAPQIPGRMEKVNPTPGAQPLVIVDYAHTPEALEWTLRSTRELTAG 413

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----- 437
           R+++VFG  GDRD  KR  +  IA   AD+  VTD+NPRSEDP+ IR  ++ GI      
Sbjct: 414 RVVIVFGTDGDRDASKREELAAIAAREADVLWVTDENPRSEDPQSIRDYLLRGIASARPD 473

Query: 438 --GFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                E    R +A+R AI      D +++ GKG E    +  G      D  +  E+L
Sbjct: 474 MHDVHEVTTCRRDAVRQAILDARAADTVIITGKGAEWYQEIQ-GIHHRYNDVPVAAEVL 531


>gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
 gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 489

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 160/490 (32%), Positives = 250/490 (51%), Gaps = 24/490 (4%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           + +      ++  I  ++  ++  +   IF A+ G    G+ FI  A+A GA  I+   A
Sbjct: 2   ESNNIIEIIKKLNIRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGASLIITDQA 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                    I S + ++VV N    +    + LY K P+ ++AVTGT GK+SV ++ QQ+
Sbjct: 62  --------PITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQL 113

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL-----------TTPSPIYLAKALSYLSSQGVTHV 185
           C  +G  +  IG    I++    N+L           TT S I     L  L++ G+  V
Sbjct: 114 CMLAGEQAASIGTLGVITTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLATNGINFV 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASSHGLDQ+RL  IK  A +FT+  RDH+DYH+T   Y +AK++LF+E +     AI
Sbjct: 174 ALEASSHGLDQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAI 233

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +      +  +  +     L    Q   I +  V +  N Q+V    +  D+ F  P
Sbjct: 234 VNNNINELSIIQSKITDEFGLKLLSVEQQGDIQIIDVQSSLNGQKVHFRYKNSDYKFEVP 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   + N L+A  L I IG+DSA ++  L  L  + GR E +         +VDYA T
Sbjct: 294 VIGRVHITNILIALLLAINIGLDSAKLIPLLSNLKPIKGRMEKIQFG--NCYAFVDYALT 351

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTDDNPRSE 423
            N+L  +L  +R + + GR+I +FG   +RD   +R  MG +A  L+D+ IVTD +  +E
Sbjct: 352 PNALATMLTELRALNNKGRLITIFGGSENRDAIARRVQMGIVASKLSDLVIVTDQDSGNE 411

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           DP  IR EI+      IE  NR EAI+ AI ++   D+L++AGKGHET  ++  G     
Sbjct: 412 DPAAIRKEILQVARSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVLK-GRIINY 470

Query: 484 VDCDIIREIL 493
            D + ++  L
Sbjct: 471 NDMEQVKLYL 480


>gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 476

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 132/501 (26%), Positives = 216/501 (43%), Gaps = 34/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++ ++ K+   +   +        +++I  VSS+S+ I+  +IFVAI G + DGH +I
Sbjct: 1   MKIEKIL-KEISYISKNIQN------DKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+  GA  IV        +     ++    + V++ R  L+  ++ L     +   ++
Sbjct: 54  ENALENGASTIV------YTNDDVEFKNEINYIKVEDARLALAKISNFLSDFPSKSLRMI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A+ V  +  + G +   IG      +        TTP    +   L+  
Sbjct: 108 GVTGTNGKTTTANIVSFLLNKLGETCANIGTDGAFFNGKTLPTEHTTPEITDINYILNEA 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+ +V +E SSHGL   R  GI    G FTNL  +H+DYH+T   YF AK      +
Sbjct: 168 KKDGIKNVVMETSSHGLCLKRNYGIAYEYGVFTNLSPEHMDYHKTMDNYFKAK-----MI 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L   S   +   D    +  K        +             K   +       +    
Sbjct: 223 LLNHSKKQVVNLDDDYGKKAKEIFKDALTISINEDSNYKAENIKRVDMG------LEFFV 276

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F     G + +YN+L A  +   +G     + + LE    V  RFEF+  N  G  
Sbjct: 277 NGVKFHLKRFGMYDIYNSLCAIAIANDLGFKLEEISKALEGFKGVKSRFEFI-ENDLGIN 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VD+AHT+ S E + K++      +   V+G  GDR    R  +G+I+      +++T 
Sbjct: 336 IVVDFAHTTTSFESLYKDLPK--DRKKFAVYGISGDRTPDIRRGLGRISAKYDIFSVITT 393

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P+ +  E I  +I  G+       I   NR EAI+ AI    K D + + GKG E   
Sbjct: 394 DDPKFDTFENISNQIKEGVEENNGECIIIRNRKEAIKYAISHAKKGDFVFMLGKGEEDFL 453

Query: 474 IVTNGEKKMSVDCDIIREILG 494
            +    K    + + IRE+L 
Sbjct: 454 KLKANIKTYYNEKETIREVLE 474


>gi|307731077|ref|YP_003908301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
 gi|307585612|gb|ADN59010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
          Length = 519

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 147/481 (30%), Positives = 212/481 (44%), Gaps = 34/481 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A      D   FI  A+ +GA A++V          A+      
Sbjct: 30  HLHADTRSLGAGDAFFAYAVEGADNRPFIDAALERGAAAVLVQPEGFSGALDASSM---- 85

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   +++L V  TGT+GK+S + ++       G     IG 
Sbjct: 86  -LAVPRLNELAGSIASAWYGDPSDHMLTVGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T           TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH+T +AY  AK RLF      E  A +   D      +  +     R +
Sbjct: 205 FTNLTQDHLDYHRTFEAYEAAKARLFAW---PELRAAVINRDDAVGRRLLASTRGHARTI 261

Query: 269 SVGYQGKFIHLKKVCAIHNKQ--------------QVTISVEGKDFDFLFPLPGEFQVYN 314
           + G         +     +                    + +  + D      G F V N
Sbjct: 262 AYGLDAGQADPSQAAQQADAFLLAANVRATATGTAFHLSTSDWGEADVEVQTLGAFNVSN 321

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMI 372
            L   G  +A  +     L  L KL  V GR + +G   +       +DYAHT ++LE  
Sbjct: 322 LLGVLGALLAANVPFDAALAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKT 381

Query: 373 LKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L+ +R +     G +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I 
Sbjct: 382 LEALRPMAAARGGELICMFGCGGDRDATKRPLMGAIAEKLADGVVVTSDNPRSEDPQSII 441

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D 
Sbjct: 442 GQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQ 500

Query: 487 D 487
           D
Sbjct: 501 D 501


>gi|311741524|ref|ZP_07715348.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303694|gb|EFQ79773.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 511

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 162/499 (32%), Positives = 242/499 (48%), Gaps = 24/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L        +     +++    DS  +  G +F A+ G +  G  F   A    A A
Sbjct: 5   LDTLAQLSGGRVIGDATVEVSACGLDSSRLPEGALFAALPGTRVHGAQF---ARDTKAGA 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++  +A    D     +   PILVV++ R  L   ++ +YG       ++ VTGTSGK++
Sbjct: 62  VLTDAAG--LDLLTEAQETRPILVVEDIRAVLGPISAEIYGHPTRELTVIGVTGTSGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  ++     +G S   IG T T  +       LTTP    L +  + + ++GVTHV +
Sbjct: 120 TSYLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVM 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L+  R+ G +   G FTNL +DH+D+H T + YF AK +LF      E  A++ 
Sbjct: 180 EVSSHALELGRVRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAE-RAVLC 238

Query: 248 ADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD + + +    K A +    V + G        +        Q+V +  +G +F F  
Sbjct: 239 IDDEWGERMRGVAKSAGHEVTTVDTQGAAATISARQTATEATGAQEVALDYDGANFTFRL 298

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPGEF + NA +A G+  A+G D A  L  +EK+ V PGR E +          VDYAH
Sbjct: 299 PLPGEFNIANACLALGMATAVGEDPAEFLSGVEKVAV-PGRMERIDRGQ-DFVAVVDYAH 356

Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              ++  +L  +R     T+GR+ +V G GGDRD  KRPIMG  A   AD+ +VTDDNPR
Sbjct: 357 KPAAIAAVLDTLRGQLEGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPR 416

Query: 422 SEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           SEDP  IRA ++ G           E G+R  AI   ++     D ++V GKGHE   +V
Sbjct: 417 SEDPATIRAAVVEGARDAAPQGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV 476

Query: 476 TNGEKKMSVDCDIIREILG 494
            NG+     D + +   +G
Sbjct: 477 -NGKTLHFDDREEMARAIG 494


>gi|227543129|ref|ZP_03973178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181117|gb|EEI62089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 507

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 208/502 (41%), Gaps = 23/502 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I +   E   +L        + +++ ++ +    +   +F A+ G +  G  F   A + 
Sbjct: 5   IERIATECAGEL-HLRQGSPDLEVSHIAINGADARPDGLFAAVAGTRSHGAKF---AGSS 60

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
            A AIV        +   T     P++V D+ R  L   ++ + G     +  + +TGTS
Sbjct: 61  QAAAIVTDKPGY--EILKTAGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTS 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  ++     +G +   IG T T  +       LTTP    L +    +   GVT
Sbjct: 119 GKTTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVT 178

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           HV +E SSH +   R+ G+      FTNL +DH+D+H T + YF+ K +LF    P  + 
Sbjct: 179 HVVMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAK 238

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             I   D      + R        +S            +    +               +
Sbjct: 239 KSIICVDDKWGVDLTRLAGPAATTVSTKGAPANFMATDIETEPDGTSQFTVAYKGKKQRV 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                          A    A                 VPGR E +  N +G    VDYA
Sbjct: 299 TLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANIQVPGRMEKI-DNDKGVLAVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE  +K +R    GR+I VFG GGDRD GKRPIMG  A+  AD+ I+TDDNPRSE
Sbjct: 358 HKPAALEAAIKAVRDEVEGRVIAVFGAGGDRDHGKRPIMGSAAVAGADVVIITDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPGFIE------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DP  IR  I  G   F+              G+R +AI  A+      D ++VAGKGHE 
Sbjct: 418 DPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQAIALAVNKSQAGDAIIVAGKGHEQ 477

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             +V  GE +   D   +R  L
Sbjct: 478 GQLVG-GEMRDFDDRIELRRAL 498


>gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
 gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
          Length = 487

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 215/472 (45%), Gaps = 14/472 (2%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +  ++  DSR ++ G  FVA+ G++ DG  FI  AIA GA A     A +  D     R
Sbjct: 18  VEFQQLVLDSRRVRPGDCFVAVAGHQVDGRDFIDSAIALGAVA---VLADADADGRQADR 74

Query: 88  SNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           +   ++ V N  + LS  A           ++ VTGT+GK++V     Q+    G  +  
Sbjct: 75  NGVIVVGVHNLSQRLSALALRAYPAATRPTLIGVTGTNGKTTVTQLCAQLLTALGHQAGV 134

Query: 147 IGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G            +  TT   I +A+ L   +  G   V++E SSHGL Q R+  + + 
Sbjct: 135 MGTVGNGLWGDLIPSVNTTSDAITVARELDRQAKSGAEAVALEISSHGLSQSRVAALPVQ 194

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA-- 263
            G +TNL RDH+DYH    AY  A  +     LP     +   DD       +    +  
Sbjct: 195 VGVYTNLSRDHLDYHGDMAAY--ADAKRQLFALPGLRHGVFNLDDETGSRWHRELSGSLL 252

Query: 264 --GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G  +      G ++ ++ V       +  +           PL G F + N L A G 
Sbjct: 253 ALGYSIQGARCDGAYLTVEGVEYHDQGVRARVVSSFGQGTLNSPLLGAFNLANLLAALGA 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++G   + +L  + +LH   GR E  GT+S    + VDYAHT ++L   L  +R    
Sbjct: 313 LLSLGYSLSDLLSVVPQLHSAAGRMECFGTDSTPT-LVVDYAHTPDALSQALAALRPHCR 371

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FI 440
           G +  VFGCGG+RD GKRP+M + A   AD  I+T DNPRSE    I A++  G+ G   
Sbjct: 372 GALWCVFGCGGERDSGKRPLMAQAAEQGADHLIITADNPRSEAFADIAAQMEAGLTGQAE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              +R  A+R A       D++++AGKGHE   I+         +  + +++
Sbjct: 432 VIEDRAAAVRRAFAQAQPGDMVLLAGKGHEDYQIIGGNRLDY-NERALAQQL 482


>gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 934

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 150/477 (31%), Positives = 232/477 (48%), Gaps = 21/477 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  D+R + AG +F A VG   DG  +I QA+  GA AIV+ +        A    + P+
Sbjct: 23  LCLDTRQLSAGDVFFACVGLTGDGRDYIAQAVEAGAAAIVMQADDRASATPAI---DVPV 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V +    L       Y +  E++  +AVTGT+GK+S   ++       G     IG  
Sbjct: 80  LAVPDLPGQLGSIGHLWYDRPSEDMSVVAVTGTNGKTSCVQWLAAALNAEGTPCGTIGTL 139

Query: 151 STISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                   +    LTTP  + + ++L+ + + G   V++EASS GLDQ RLD ++++  +
Sbjct: 140 GVTLPNGNNLGGVLTTPDVLSMHRSLATMRAAGAQVVALEASSIGLDQGRLDQVRIVIAA 199

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRV 267
           FTNL  DH+DYH T   Y  AK  LF     +   A++  DD   K+++      +    
Sbjct: 200 FTNLTHDHLDYHGTLDNYQRAKFSLFAWPGLRG--AVVNVDDPAGKQLVSTLPPASTLAY 257

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G+    I  + + A        +         L  L GE  V N L+  G+   +G 
Sbjct: 258 SISGHAEATIQAQDIHAGRYGLVFNVVTRDGAVQLLTRLVGEHNVANLLLVTGVLQQLGW 317

Query: 328 DSALVLEHLEKLHVVPGRFEFV------GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           D + +   L  L  V GR + V      G       + VDYAHT ++L+  L  +R +  
Sbjct: 318 DLSRIARVLSTLRSVEGRLQVVDALGAVGAAHGQAMVVVDYAHTPDALKRALLALRDVAR 377

Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              G++I VFGCGG RD+ KRP+MG+IA++LAD  ++T+DNPR E+P  I A+I  G+  
Sbjct: 378 VRGGKLICVFGCGGSRDRSKRPMMGRIAVELADEVVLTNDNPRLEEPLDIIAQIKSGMST 437

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               + +R  AI ++I   +  DV+++AGKGHET      G++    D +  R  L 
Sbjct: 438 AARVELDRALAILSSIWAADAHDVVLLAGKGHETYQEFQ-GQRVPFDDREWARFALS 493



 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 130/376 (34%), Gaps = 21/376 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R I  G +FVA+ G   DGH ++  A+  GA A VV    +            P
Sbjct: 499 SISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEHKDTAVA--------LP 550

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
             V+ +TR+ L   ++    +H   ++AVTG++GK++    +  I ++S      +    
Sbjct: 551 QFVLGDTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQSPGEEASLATRG 610

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +++            + L +       +   +   E S           +        N
Sbjct: 611 NLNNDIGVPLT----VLRLNRQHRAAVFELGMNHPGEISLLAGIAQPTVAL------VNN 660

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             R+H ++  T +A       + + L            D    ++          +    
Sbjct: 661 AQREHQEFMLTVEAVARENGTVIDMLPVDGIAVFP--GDDAYSDLWAELAGTRTVLRFGF 718

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                ++  ++ A        I             PG   + NAL AA    A G+    
Sbjct: 719 SPDFDVYADQIHAEPTHTVCCIHTPIGSATLALASPGVHNLRNALAAAACAFATGVPLES 778

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +++ LE  + V GR +          I   Y    +S+   +  +  +  G+ ++V G  
Sbjct: 779 IVQGLEAFNPVSGRMQPHALAGGYQLIDDTYNANPDSVRAAIDVLAEL-DGKRVLVLGDM 837

Query: 392 GDRDQGKRPIMGKIAL 407
           G+       +  ++  
Sbjct: 838 GEVGANGDAMHAEVGA 853


>gi|163854034|ref|YP_001642077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
 gi|163665639|gb|ABY33006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
          Length = 492

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 202/474 (42%), Positives = 270/474 (56%), Gaps = 19/474 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +++DSR +  G +FVA+ G   DG LF          A   ++         T  
Sbjct: 25  RPVAGLTADSRKVVPGGVFVAVPGTAADGRLF---------AAAAAAAGAVAVAGEGTRP 75

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            + P     + V + R+ L+L A+ L G+ PE ++AVTGTSGKSSVA FV+QI  R G  
Sbjct: 76  DDLPEATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRE 135

Query: 144 SFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           S  +G    +++   +   LTTP P+ L + L+ L+ +G+T +++EASSHG++Q RLDG+
Sbjct: 136 SASLGTVGIVTNRGAEYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGV 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +L A +FTNLGRDH+DYH T + Y +AK+RLF  LLPK  PAI+ AD AY++ V+  A  
Sbjct: 196 ELTAAAFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADA 255

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---LPGEFQVYNALVAA 319
           AG  + + G  G FI L +       Q +T++  GKD+    P            A   A
Sbjct: 256 AGHAIRTTGRGGDFIRLVEAGTEGFAQSLTLTHAGKDYRVRLPLVGGFQVENALVAAGLA 315

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A   D A V   LE L  VPGR E +G  + G    VDYAH   +LE +L  +R  
Sbjct: 316 LATPAGQADPAGVFAALEGLTGVPGRMERIGEANGGLC-LVDYAHKPEALEHVLSALRPF 374

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            SGR++VVFGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG 
Sbjct: 375 ASGRLVVVFGCGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAAPGA 434

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            E G+R EAIR  +  L   DVLVVAGKGHET  IV         D D +R  +
Sbjct: 435 EEIGDRAEAIRAGVRDLRAGDVLVVAGKGHETGQIVGP-RVLPFSDHDTLRAAI 487


>gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 476

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 129/501 (25%), Positives = 214/501 (42%), Gaps = 34/501 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++ ++ K+   +   +        +++I  +SSDSR I+  +IF+A  G + DGH +I
Sbjct: 1   MKIEKIL-KEISYISKNIQN------DKEIIGISSDSRQIKENYIFLANKGYEFDGHKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             AI  GA  I+        +      S    + V + R  L+  ++ L     +   ++
Sbjct: 54  DSAIKNGANTII------YTNDDINFESGINYIKVKDQRLALAKISNLLSNYPSKSMRMI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++ A+ +  +  + G     IG       +       TTP    L + L   
Sbjct: 108 GVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILIKA 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + +  +E SSHGL   R  GI    G FTNL  +H+D+H+T   YF AK      +
Sbjct: 168 KKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAK-----MI 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L   S   +   D    +  K        +            K +  +    + T++   
Sbjct: 223 LLNNSKKQVVNLDDDYGKRAKEIFKDALTISINEDSK--YRAKNIKRVDLGLEFTVNG-- 278

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F     G++ +YN+L A  +   +G     + + LE    V  RFEF+  N  G  
Sbjct: 279 --VKFHLNRFGQYDIYNSLCAIAIANDLGYKLEEISKALEDFTGVKSRFEFI-ENKLGIN 335

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I VD+AHT  + E + K++      +I  V+G  GDR    R  +GKI+      +++T 
Sbjct: 336 IVVDFAHTPEAFENLFKDLPK--DKKIYAVYGINGDRTYDIRKAVGKISAKYGVFSVITT 393

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P+ +  E I  +I  G+       I   +R EAI+  I    K D + + GKG E   
Sbjct: 394 DDPKFDTFENISQQIKEGVDENKGECIIIKDRKEAIKYGISHAKKGDFVFMLGKGEEKFL 453

Query: 474 IVTNGEKKMSVDCDIIREILG 494
                 K    + + IRE+L 
Sbjct: 454 KFNGNIKTYYSERETIREVLE 474


>gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
 gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
          Length = 518

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 146/483 (30%), Positives = 214/483 (44%), Gaps = 39/483 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            + +D+R + AG  F A      DG     FI  AI +GA A++V         + +   
Sbjct: 30  HLHADTRSLAAGDAFFAY---AVDGADNRPFIEGAIERGAAAVLVQPEGFSGAINPSNM- 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQ 146
               L V    +     AS  Y    +++L   +TGT+GK+S + ++       G     
Sbjct: 86  ----LAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTSCSQWISAALTALGTRCAI 141

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T           TTP    L ++L+ L   G   V++E SSH L Q R++G    
Sbjct: 142 IGTLGTGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYHQT +AY  AK RLF      E  A +   D  +   +  +     
Sbjct: 202 IAVFTNLTQDHLDYHQTFEAYEAAKARLFAW---PELRAAVINRDDAAGRRLLASTQGHA 258

Query: 266 RVLSVGYQGKFIHLKKVCAIHN-------------KQQVTISVEGKDFDFLFPLPGEFQV 312
           R ++ G       L+                          + +  D +      G F V
Sbjct: 259 RTIAYGLDSGQGALQDAPQADALLLASNVRATATGTAFHLSTSDWGDAEVEVQTLGAFNV 318

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLE 370
            N L   G  +A  +     L  L +L  V GR + +G   +       +DYAHT ++LE
Sbjct: 319 SNLLGVLGALLAADVPFEAALAELAQLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALE 378

Query: 371 MILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L+ +R + + R   +I +FGCGGDRD  KRP+MG IA  +AD  +VT DNPRSEDP+ 
Sbjct: 379 KTLEALRPMVTARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQS 438

Query: 428 IRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   
Sbjct: 439 IIEQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFS 497

Query: 485 DCD 487
           D D
Sbjct: 498 DQD 500


>gi|260220010|emb|CBA27120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 499

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 221/480 (46%), Gaps = 22/480 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++DSR   +   F+A  G   D   F+  A+A+GA A +   + +        R+ 
Sbjct: 19  VQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALACLAEQSGAEAFELDPDRTG 78

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG----LS 143
                    +      A+  YG    +  +++VTGT+GK+S A ++ Q   + G    + 
Sbjct: 79  ----FYSGLKAGSGPIAAAFYGMPSRDLAVMSVTGTNGKTSTAWWLAQALGQVGGKEAMP 134

Query: 144 SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
              IG          +    TTP P+ L K L   + QG+   ++EASS G+++ R+ G 
Sbjct: 135 CGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRSFTEQGLKACAMEASSIGIEELRMAGT 194

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +    FTN  +DH+DYH +  AY+ +K  LF         A++  DD    E+     +
Sbjct: 195 VIHTAIFTNFTQDHLDYHGSMAAYWASKRALFSW--DGLKAAVVNVDDDKGAELAAELAS 252

Query: 263 AGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               V +VG  +   +  + V          +    +       + G + V N L     
Sbjct: 253 TSLDVWTVGVQRDARLVARGVTHSAQGLAFDVVEGRESVRLQSHVIGSYNVSNLLGVIAA 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +GI     ++    L  VPGR E VG +S    + VDYAHT ++L   L+ ++ +  
Sbjct: 313 MRTVGIPLQSAVQSCATLLPVPGRMECVGGDSAPL-VAVDYAHTPDALAQALRALQPVAQ 371

Query: 382 ---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--- 435
              G++  VFGCGGDRD  KRP+MG +A   ++ A+VT DNPRSE PE I A+I+ G   
Sbjct: 372 ARGGKLWCVFGCGGDRDASKRPLMGAVAAAQSEHAVVTSDNPRSEKPEAIVAQILLGMVE 431

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            P    + +R  AI  AI   + +DV+++AGKGHE    +  G K    D    R  L L
Sbjct: 432 CPHVDVQVDRAVAIADAIRSADARDVILLAGKGHEETQEIA-GVKNPFSDMTHARSALAL 490


>gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 435

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/437 (32%), Positives = 206/437 (47%), Gaps = 14/437 (3%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
            +GA A+    AY ++       ++ P++ V      LS  A R YG      N++ VTG
Sbjct: 1   KRGAAAV----AYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLNLVGVTG 56

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+SV   V Q     G     +G   T      Q  R TTP PI +   L+ L   G
Sbjct: 57  TNGKTSVTQLVAQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAG 116

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V++E SSHGLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K 
Sbjct: 117 ARAVAMEVSSHGLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWPDLKC 176

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               +  DD + +E+      +     S      +++ +      +  + T+     +  
Sbjct: 177 RVINL--DDDFGRELAAVKQESRLITYSQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHF 234

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G F + N L A G  + +      +L+ L KL    GR + +G  +    + VD
Sbjct: 235 LRSSLLGRFNLSNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLG-GADKPLVVVD 293

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPR
Sbjct: 294 YAHTPDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPR 353

Query: 422 SEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           SE P  I  +I  G            R +AI   I   N  DV+V+AGKGHE    + NG
Sbjct: 354 SESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-NG 412

Query: 479 EKKMSVDCDIIREILGL 495
           +++   D       L +
Sbjct: 413 QRQPFSDLQEAASALAV 429


>gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardia farcinica IFM 10152]
 gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Nocardia farcinica IFM
           10152]
          Length = 536

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 152/494 (30%), Positives = 230/494 (46%), Gaps = 27/494 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL    +  P+   +  +  +   S  +Q G +F A+ G    G  F   A+A+GA A+ 
Sbjct: 37  ELTGAHAAAPVP-ADVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDAVARGAVAVF 95

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
             +  +            P+LV +  R+ L   ++ +YG+  + +  + +TGTSGK++ +
Sbjct: 96  TDAEGAR----VLDGLTVPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSGKTTTS 151

Query: 131 SFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             V+     +GLS+  IG   T        + LTTP    L    + +  QGV  V +E 
Sbjct: 152 YLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQAVVMEV 211

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH L   R+DG++   G+FTNL +DH+D+H   + YF AK RLFE   P  +   +   
Sbjct: 212 SSHALALGRVDGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAARTAVVCV 271

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D      +     A   V + G    +     V  +  +Q+ T +    +      LPG 
Sbjct: 272 DDAWGRRLAEGLAAPITVSTTGE-ADWRVAGGVATVGAEQEFTAAGPAGELGVRLRLPGR 330

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           + V NAL+A  +C A   D A+    L  + V PGR + V    +     VDYAH   +L
Sbjct: 331 YNVANALLAVAVCAAARADPAVAAPALATVDV-PGRMQRV-ERGQDFLAVVDYAHKPAAL 388

Query: 370 EMILKNIRTI-------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           E ++  +R           GR+ VV G GGDRD GKR +MG      AD+ ++TDDNPR+
Sbjct: 389 ESVIATLREHLAAADPEHPGRLAVVVGAGGDRDAGKRALMGAAGARGADLLVITDDNPRT 448

Query: 423 EDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           EDP  IRA +  G             E G+R  AI  A+    + D ++VAGKGHET   
Sbjct: 449 EDPATIRAALRAGALEVPAEVRGEVREIGDRAAAIEAAVAWARRGDAVLVAGKGHETGQE 508

Query: 475 VTNGEKKMSVDCDI 488
           +  G K    D ++
Sbjct: 509 IA-GVKHPFDDREV 521


>gi|323527435|ref|YP_004229588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
 gi|323384437|gb|ADX56528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
          Length = 519

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 146/481 (30%), Positives = 212/481 (44%), Gaps = 34/481 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A      D   FI  A+ +GA A++V          A+      
Sbjct: 30  HLHADTRSLAAGDAFFAYAVEGADNRPFIDGALERGAAAVLVQPEGFGGAIDAS-----T 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           +L V    +     AS  YG   +++L V  TGT+GK+S + ++       G     IG 
Sbjct: 85  MLAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQWISAALTALGTRCAIIGT 144

Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T           TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLPGQLVHTGFTTPDAPQLQRSLAQLRHAGAKAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T +AY  AK RLF      E  A +   D  +   +  +     R +
Sbjct: 205 FTNLTQDHLDYHHTFEAYEAAKARLFAW---PELRAAVINRDDAAGRRLLASTRGHARTI 261

Query: 269 SVGYQGKFIHLKKVCAIHN--------------KQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + G               +                    + +  D D      G F V N
Sbjct: 262 AYGLDSASKGTPDSTPQADALLLASNVRATATGTAFHLSTSDWGDADVEVQTLGAFNVSN 321

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMI 372
            L   G  +A  +     L  L +L  V GR + +G   +       +DYAHT ++LE  
Sbjct: 322 LLGVLGALLAADVPFDAALAELARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKT 381

Query: 373 LKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L+ +R +     G ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I 
Sbjct: 382 LEALRPMAAARGGELVCMFGCGGDRDATKRPLMGAIAEKLADGVVVTSDNPRSEDPQSII 441

Query: 430 AEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D 
Sbjct: 442 EQIAAGMKDASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQ 500

Query: 487 D 487
           D
Sbjct: 501 D 501


>gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
 gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
          Length = 501

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/481 (29%), Positives = 221/481 (45%), Gaps = 26/481 (5%)

Query: 23  MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           + W  +++   + +DSR IQ G  F+A  G   DG   +  A+A+GA A +V        
Sbjct: 14  VDWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVECEG---- 69

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139
                 +   I  +   +    + AS  +G   +   +LAVTGT+GK+S A ++     +
Sbjct: 70  VEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTNGKTSTAWWLADALNQ 129

Query: 140 SGLS-------SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                         +G     +    Q   +TTP P+ L +A +  +  G    ++EASS
Sbjct: 130 LSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQFAEAGHRACAIEASS 189

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GL +HRLDG ++    FTN  +DH+DYH    AY+ AK  LF+   P    A++  DD 
Sbjct: 190 IGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFDW--PGLRAAVVNVDDP 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +      +   + S+  QG      K +        +T++           + G +
Sbjct: 248 QGAALHAELQGSDLDLWSISLQGPARLQAKHIVHTGAGLALTVAEGAHTEVLQTQVIGLY 307

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L       A+G+  A  L+   +L  VPGR E +    +   + VDYAHT ++L 
Sbjct: 308 NVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQPL-VAVDYAHTPDALH 366

Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L  ++ +     GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNPR E+P+ 
Sbjct: 367 QALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRGEEPQS 426

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I+ G         + +R  AI  A+      DV+++AGKGHE       G++    
Sbjct: 427 IIHQILLGTIAGTSVRAEVDRAAAIAQALAEAGANDVVLIAGKGHEDYQE-AAGQRVPFS 485

Query: 485 D 485
           D
Sbjct: 486 D 486


>gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Acidovorax ebreus TPSY]
 gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY]
          Length = 501

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/481 (29%), Positives = 218/481 (45%), Gaps = 26/481 (5%)

Query: 23  MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           + W  +++   + +DSR IQ G  F+A  G   DG   +  A+A+GA A +V        
Sbjct: 14  VDWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGDAVARGAAACLVECEG---- 69

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQR 139
                 +   I  +   +    + AS  +G   +   +LAVTGT+GK+S A ++     +
Sbjct: 70  VEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTNGKTSTAWWLADALNQ 129

Query: 140 SGLS-------SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                         +G     +    Q   +TTP P+ L +A +  +  G    ++EASS
Sbjct: 130 LSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQFAEAGHRACAIEASS 189

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GL +HRLDG ++    FTN  +DH+DYH    AY+ AK  LF+    + S      DD 
Sbjct: 190 IGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFDWPGLRASVVN--VDDP 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +      +   + SV  QG      K +         T++           + G +
Sbjct: 248 QGAALHAELQGSDLDLWSVSLQGPARLQAKHIVHTGAGLAFTVAEGAHTEVLQTQVIGLY 307

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N L       A+G+  A  L+   +L  VPGR E +    +   + VDYAHT ++L 
Sbjct: 308 NVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQPL-VAVDYAHTPDALH 366

Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L  ++ +     GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNPR E+P+ 
Sbjct: 367 QALAALKPVAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADEVIVTSDNPRGEEPQS 426

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I  +I+ G         + +R  AI  A+      DV+++AGKGHE       G++    
Sbjct: 427 IIHQILLGTIAGTSVRAEVDRAAAIAQALADAGANDVVLIAGKGHEDYQETA-GQRVPFS 485

Query: 485 D 485
           D
Sbjct: 486 D 486


>gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
 gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
          Length = 501

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 149/517 (28%), Positives = 232/517 (44%), Gaps = 52/517 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ ++    PE ++             I+ V+ DSR  + G  FVAI G   DG  F+PQ
Sbjct: 8   LEKILGASVPESVDG------------IDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQ 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+A GA  +V                  P +VV + R  L+  A+   G       +  +
Sbjct: 56  ALANGASLVVAERDVE----------GAPTVVVPDARVALAALATATAGHPSHDVTVYGI 105

Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177
           TGT+GK++ +  +  I     G     +  T+ I      +    TT     +   L+ +
Sbjct: 106 TGTNGKTTSSYVLHGILSAAYGEEKTGLLTTAEIVVGREREPAVRTTGEAPQVQGNLARM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV HV +E SSHG+  HR+ G +  A  FTNL RDH+D H T + YF  K RLFE  
Sbjct: 166 RDAGVEHVVLETSSHGIHLHRVAGTRYAAALFTNLTRDHLDLHGTMEDYFLTKRRLFE-- 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQV 291
              + P +   DDAY   ++          +S     +   +              ++ +
Sbjct: 224 -WTDGPKLTNVDDAYGARIVAEVPGTLGFGVSENADYRITKVHPSDGGTAFTLTTPERFL 282

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    +   PL G++ V+N   A+ + + +G+    ++  +  +  VPGRFE V  
Sbjct: 283 DGRDAPGVIELQMPLLGDYNVHNVAGASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPA 342

Query: 352 NS-RGGRIYVDYAHTSNSLEMILKNIRTI------------TSGRIIVVFGCGGDRDQGK 398
            + +G  + VDYAHT   LE++L   R +              GR+I V+G  G RD  K
Sbjct: 343 ATAKGFEVVVDYAHTEVGLELVLDVARAVVGRDHADGGVRSEGGRVICVYGAAGRRDPAK 402

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEML 456
           RP MG+ A  LAD+ I+T+D+   EDP+ I  E++ G          +R +AIR A+   
Sbjct: 403 RPKMGEAASRLADVNIITNDDTYDEDPQAIADEVMAGADPSNTTIVLDRRDAIRQALTQA 462

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D++VVAGKGHE V  +  G+     D  ++ E+L
Sbjct: 463 RPGDIVVVAGKGHEHVQHLPGGDVDFH-DTTVVTELL 498


>gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
 gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
          Length = 477

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 144/477 (30%), Positives = 222/477 (46%), Gaps = 28/477 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           +  + +I  V++DSR I+ G +FVAI G + DGH FI +AI  GA  IV++   +  D  
Sbjct: 17  KNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQID-- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                    + VD+ R  L+  ++ +     +   ++ VTGT+GK++ +S +  I +   
Sbjct: 75  -----GINYIKVDDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLN 129

Query: 142 LSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                IG   T  +    +   TTP    + K L     + + +  VE SSHGL  HRLD
Sbjct: 130 SPCTNIGTNGTFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVECSSHGLYLHRLD 189

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           GI      F NL  +H+D+H+  + YF+AKM LFE        A     +   +   K  
Sbjct: 190 GIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFEN-------AKKKIANVDDEYGRKAK 242

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              + V  I  K    I    K+  F+      F VYNA+ A  
Sbjct: 243 ARFEDTYTFSLENESDFRAENVELIDGKMHFEI----KNVKFVLNRFALFDVYNAVAAIA 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G +   + + LE    V  RFEFV  N RG  I +D+AHT  + E I K++    
Sbjct: 299 AVNLLGYELEDIAKALESFTGVEARFEFV-NNDRGINIVIDFAHTPKAFENIYKSVPN-- 355

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
             R I V+G  GDR +  R  +GKI+ +    ++VT D+P+ +  E I  +I+ GI    
Sbjct: 356 DKRKIAVYGMSGDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIVSGIEEAN 415

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             F+   +R  AI+ AIEM +K D +++ GKG ET   +   EK    + + + E+L
Sbjct: 416 GEFVRIKDRKSAIKHAIEMADKGDFVLLLGKGQETFIKLKGNEKTPYSEKETVNEVL 472


>gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 515

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 147/515 (28%), Positives = 235/515 (45%), Gaps = 51/515 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L+      +            +  I    + D+  +  G +F+A+ G+       
Sbjct: 1   MKLSELLAGQNHHIRQG------DPEKALITAGTAFDADRVVPGSLFIAVPGH------- 47

Query: 60  IPQAIAQGAEAI-----------VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
               +  G  A+           VV     +     T   +  ++ V + R+  ++ ASR
Sbjct: 48  ----LEGGPGAVAPALARGAAAVVVEDGCVVP----TAAGDVCVVQVPDARRTAAVAASR 99

Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGP----TSTISSFAQDNR 161
            +G+    +  +A+TGT+GK+SV+  V+       G  +  IG               + 
Sbjct: 100 YFGEPGRRMDMVAITGTNGKTSVSYMVESALRISEGARAGVIGTAGSRIGDELIPMPRSV 159

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L+TP    L   L Y+  +GV  V +EA+S GL  HR+D   +  G FTNL +DH+D H 
Sbjct: 160 LSTPESPDLQYLLGYMRDRGVGTVVLEATSMGLLTHRIDRTFIDVGVFTNLSQDHLDDHG 219

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T + Y +AK+RLF         A++ ADD     +       G                 
Sbjct: 220 TMENYRDAKLRLF---QGLCEHAVVNADDPVGARIGA--MMPGAVTTYALDAEADFRATD 274

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + A  +  + T+  +G+ +    P PG F V NAL A   C  +G D A ++  L ++  
Sbjct: 275 LTADASGTRFTLHHQGRKYPAAIPTPGRFSVSNALAAMAACHTLGHDLAGLVSALGRMPQ 334

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGRFE + T   G  + VDYAH+ +SLE +L  +R      ++ VFGCGGDRD  KR  
Sbjct: 335 IPGRFERL-TTVGGTSVIVDYAHSPDSLEKVLGAVRGFARSAVVTVFGCGGDRDTTKRTD 393

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           MG+IA   +D+ ++T DNPR+EDPE I  +++ GI      +    +R  AI  A+    
Sbjct: 394 MGRIAGTHSDLVVLTSDNPRTEDPEVIMDQVVPGIEATGTPYERFTDRRTAIEFALSAAG 453

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
             D++++AGKG E   IV +       D   +R++
Sbjct: 454 PDDIVLIAGKGSEPYQIVGD-VLLPFSDVATVRDL 487


>gi|255325349|ref|ZP_05366455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297914|gb|EET77225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
          Length = 511

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 161/499 (32%), Positives = 242/499 (48%), Gaps = 24/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L        +     +++    DS  +  G +F A+ G +  G  F   A    A A
Sbjct: 5   LDTLAQLSGGRVIGDASVEVSACGLDSSRLPEGALFAALPGTRVHGAQF---ARDTKAGA 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++  +A    D     +   PI+VV++ R  L   ++ +YG       ++ VTGTSGK++
Sbjct: 62  VLTDAAG--LDLLTKDQETRPIVVVEDIRAVLGPISAEIYGHPTRDLTVIGVTGTSGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  ++     +G S   IG T T  +       LTTP    L +  + + ++GVTHV +
Sbjct: 120 TSYLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVVM 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L+  R+ G +   G FTNL +DH+D+H T + YF AK +LF      E  A++ 
Sbjct: 180 EVSSHALELGRVRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAE-RAVLC 238

Query: 248 ADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DD + + +    K A +    V + G        +        Q+V ++ +G DF F  
Sbjct: 239 IDDEWGERMRGVAKSAGHPVTTVATQGAAATISARQTATEATGAQEVALNYDGADFTFRL 298

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPGEF + NA +A G+  A+G D A  L  +EK+ V PGR E +          VDYAH
Sbjct: 299 PLPGEFNIANACLALGMATAVGEDPAEFLSGVEKVAV-PGRMERIDRGQ-DFVAVVDYAH 356

Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              ++  +L  +R     T+GR+ +V G GGDRD  KRPIMG  A   AD+ +VTDDNPR
Sbjct: 357 KPAAIAAVLDTLRGQLEGTTGRVGIVVGAGGDRDSSKRPIMGAAAASRADLTVVTDDNPR 416

Query: 422 SEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           SEDP  IRA ++ G           E G+R  AI   ++     D ++V GKGHE   +V
Sbjct: 417 SEDPATIRAAVVEGARDAAPEGDIREVGSRARAIDEVVDWAEPGDAVIVVGKGHEVGQLV 476

Query: 476 TNGEKKMSVDCDIIREILG 494
            NG+     D + +   + 
Sbjct: 477 -NGKTLHFDDREEMARAIE 494


>gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 485

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 131/498 (26%), Positives = 217/498 (43%), Gaps = 33/498 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  ++  +  ++            +  +  V +DSR + +G +F+ I G   DGH F  
Sbjct: 5   RLSAILQNEMDDIF-----------DPWVTGVETDSRKVSSGNVFICIRGYTVDGHKFAE 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            A+A GA A++             +  + P +VV +T++     AS  Y      +    
Sbjct: 54  DAVANGASAVISE---------YPLDLDVPNVVVADTKQTAGEVASVFYDHPSHRMRIYG 104

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++ A+    + + SG  +  +            +   TTP  + L + L+ + 
Sbjct: 105 VTGTNGKTTTATLTYDLLRLSGRRAGIVSTIGARFHNQTIETANTTPEAVVLHRILAEMV 164

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             GVT   +E SSH L + R+ GI   A +FTNL  DH+DYH++   Y  AK RLFE++ 
Sbjct: 165 DAGVTDCVLEVSSHALMEGRVAGIHFHAAAFTNLTHDHLDYHRSMDEYARAKARLFEQVE 224

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AI+   +  +  VM         ++             V  I   + V + ++  
Sbjct: 225 VTNGEAIVLNAEDSASHVMAEFAPTRRAIMYSTTVDVE---ADVQVIWRDETVLVRMKEF 281

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +      G F   N   A GL     +    ++ ++  L +  GR E + T      I
Sbjct: 282 KLEVPVRFMGAFNAANLAAAIGLVSTSDMALRTIVSNVPGLTLPKGRLERLATE--DAEI 339

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y+DYAHT + LE  L  ++      ++VV    GDRD  KR  MG+IA   ++  IVT  
Sbjct: 340 YIDYAHTPDGLEKCLSTLQQ-DDRALVVVLSAAGDRDPTKRQDMGRIASRYSNEVIVTVH 398

Query: 419 NPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           + R EDP++I  +++ GI     ++    R EA+R A     +   +VV GKGH      
Sbjct: 399 DVRMEDPKQIIRDLVKGIQPDVKYVTFEAREEALRHAATQALEGKRVVVVGKGH-DHIER 457

Query: 476 TNGEKKMSVDCDIIREIL 493
              +     + +I+ E L
Sbjct: 458 IGRQSIPFNESNILLEEL 475


>gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
 gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
          Length = 489

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 134/499 (26%), Positives = 223/499 (44%), Gaps = 31/499 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL D                     + +I  +  DSR  +   IF  + G   DGH  I
Sbjct: 1   MKLTDFFENV---------------PDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHI 45

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +AIA GA  IV S           I  +   + V +     +  A   Y     +  + 
Sbjct: 46  DEAIANGAIVIVHSEPIEK------INPDITYIKVKDVVHVFNQVADSFYDYPSHHMTMY 99

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTGT+GKSSVA  ++ I  +   +++    +   ++      + +P+   +   L  + 
Sbjct: 100 GVTGTNGKSSVAWIIRNILNQIEPTAYVGTISIEYNNVKLPPLVASPNIDEVHGILRDMV 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ + + EASS  +DQ RLD I      FTNL  DH+DYH T   YFNAK +LF++ L
Sbjct: 160 DAGIKNCAYEASSIAIDQGRLDAIDFDVAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQ-L 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +E+ AI+  DD    ++++                    +     + +  + T+ +   
Sbjct: 219 KEEAIAIVNVDDPSGMKIVQ--DTQAKVFTYGIDYEADYRVTDYHLLKDSTRFTLHINDH 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D+     L   F +YN + A       G+    +  +++ L+ V GR E +    +   +
Sbjct: 277 DYRLETNLIARFNIYNLVAAIAAIHQKGVSMDDIASYIQHLNQVEGRMERIQDG-QPFNL 335

Query: 359 YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            VD+AHT++ +E + +   +IT    RII + G  G RD  KRPI G+I     D+ I+T
Sbjct: 336 IVDFAHTADGIEKVCQYASSITPKDCRIIAITGSAGKRDTAKRPIFGEILDHYCDMIILT 395

Query: 417 DDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +D+ R E   +I  +I  GI    ++   +R +AIR ++E+ ++ D ++V GKG+E    
Sbjct: 396 EDDSRGESVREIAEDIAKGIHHKNYVIIEDRYDAIRQSVELCSEGDTILVLGKGNEKFIA 455

Query: 475 VTNGEKKMSVDCDIIREIL 493
              G +    D  I  E+L
Sbjct: 456 REFGRESYEGDDVICHEVL 474


>gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
 gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
          Length = 564

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 135/511 (26%), Positives = 218/511 (42%), Gaps = 44/511 (8%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +  ++  + +++ +  DSR +QAG +F A  G   DG  +I  AI  GA AIV  +    
Sbjct: 54  VIDVRGTDTEVSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIADAIHTGAIAIVHQNELP- 112

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137
                +  +    + V   R  +S F +  Y    ++  ++ VTGT GKSS  SF+ Q+ 
Sbjct: 113 -----SYAAGVCYVRVREVRAVMSAFVAYFYDFPSKDLVVIGVTGTEGKSSTVSFIAQLL 167

Query: 138 QRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +   +      S              TTP  + + + L+ +   G     VE+SSHGL
Sbjct: 168 RLAHKRAGFFSTVSYSLGDEVIPNPEHQTTPESVTVQQRLAAMRDNGCEFAVVESSSHGL 227

Query: 195 D--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES---------P 243
                RL+ +   AG F N+ ++H+++H T + Y   K  LF +L               
Sbjct: 228 SPLTARLNDVCFDAGIFMNVTQEHLEFHGTFEQYRFDKANLFRKLDEHAHIKAGRSVPSF 287

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVL----------SVGYQGKFIHLKKVCAIHNKQQVTI 293
            ++ ADD  ++                            QG      K  +   +  +  
Sbjct: 288 GVVNADDPSAEYFYAATKQPCYSFSVNTAKKTAFLKNELQGVIAVNIKEDSNGIQFDIFE 347

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-GIDSALVLEHLEKLHVVPGRFEFVGTN 352
           S + +      PL G F V N   +     +I     A ++  L+KL  + GR   +   
Sbjct: 348 SGKSESIHARAPLAGLFNVQNLCASLLTVSSILQKPLAELIPLLQKLEPITGRMCKI-QE 406

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +   + +DYAHT +S +M++  I+       G++IVVFG GG+RD  KRP  G+IA   
Sbjct: 407 GQPFEVLIDYAHTPSSFQMLMPPIKDRIAKQGGKLIVVFGSGGERDTKKRPEQGRIAAAY 466

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D+ I+ D++PR EDP  +   I  G P            +R  AIR A  + N  D ++
Sbjct: 467 CDVIILADEDPRGEDPVALLEMIAAGAPHKKLDSELFIIPDRKAAIRKAFSLANPHDAVL 526

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + GKGHE   I  NG      + +I R +L 
Sbjct: 527 LLGKGHENTIIYKNGAIPY-SEEEIARTLLR 556


>gi|167580468|ref|ZP_02373342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis TXDOH]
          Length = 514

 Score =  254 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 219/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R +QAG +FVA      DG     FI  A+A+GA A++    Y  + F A     
Sbjct: 31  LHADTRSLQAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDP 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHC--AVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDAPAQAADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  +E+L  V GR + +G   +       VDYAHT ++LE  L+ +R
Sbjct: 322 GTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P+KI  +I+ 
Sbjct: 382 PIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
 gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
          Length = 568

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 128/549 (23%), Positives = 214/549 (38%), Gaps = 65/549 (11%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +   +++ +  I   +  +  +  ++ DSR ++  ++F A+ G    G+ FI QA++ G
Sbjct: 15  EETDYKIVAEDGISSPKNTDACVEGLAFDSRDVKENYLFFALPGTHTTGNKFIAQAVSCG 74

Query: 68  AEAIVVSSAYSLQDFS------ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL--A 119
           A A+V     + ++ S      A+       + V ++R  +S  +S  Y      ++   
Sbjct: 75  AGAVVFQDEITQEEHSQIKEALASSSKKVVFVKVPSSRFAMSPVSSCFYDNPSSKLVVYG 134

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSY 176
           VTGT GKSS  SF+ Q+ + +G+ +  I          +       TTP    + + L  
Sbjct: 135 VTGTEGKSSTVSFIWQLLRLNGIKAGFISTVQYSLGGDAIDNPQHQTTPEAPVVQRELYE 194

Query: 177 LSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   G TH  VE+SSHGL    +RL  +      F N+  +H+++H T + Y + K  LF
Sbjct: 195 MVCNGCTHAVVESSSHGLSKKLNRLGNVLFDCAVFMNVTLEHLEFHGTYEQYKSDKANLF 254

Query: 235 EELLPKES-------------PAIIYADDAYSKEVMKRAHNA------------------ 263
             L                    ++  +D  +        +                   
Sbjct: 255 RALDLHNHEKTIAGVATKIPAFGVVNLEDPAASYFASCTKHKTIGFTTEGKAGKQAALGL 314

Query: 264 ----------GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                          S                  +   +++ E         +PG F  Y
Sbjct: 315 SSPPLPEIPKDMPYFSCRNIASARFGLAFSIHRFETHDSLNNENSVVHVKASVPGAFNAY 374

Query: 314 NALVAAGLCIAIG-IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           N   A         I    +    +KL  V GR   V    +   + VDYAHT +S E I
Sbjct: 375 NITAAILAVHGTTGISIEKLALCAQKLTSVKGRM-TVIDEGQPFEVIVDYAHTPSSFETI 433

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              ++    G++I VFG GG+RD  KRP+ G+IA    DI I+TD++PR ED   I  +I
Sbjct: 434 FPPLKNRAMGKMICVFGSGGERDTTKRPLQGEIAARFCDIVILTDEDPRKEDRMTIIEQI 493

Query: 433 IHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             G                +R +AIR A  M  + D++++ GK HE   I  +   K   
Sbjct: 494 ALGARKEGKKDNVDLFLVPDRPQAIRKAFSMAKENDIVLLLGKSHENSIIYADNAIKY-D 552

Query: 485 DCDIIREIL 493
           +    +  L
Sbjct: 553 EISEAKNAL 561


>gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
 gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
          Length = 496

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 126/504 (25%), Positives = 223/504 (44%), Gaps = 24/504 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+++DL+                   + +I ++ +D+R++  G  FVAI G + DGH  +
Sbjct: 1   MQVEDLLRAV------PSGQLYGPEIKGEITQLVNDTRNLVPGCAFVAIKGLQFDGHTAV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            Q  A GA+ +VV                    +V +T +  +L A++ +G+  E  N++
Sbjct: 55  DQVAAAGAKLMVVE-----VLPENWQDYPLSFFLVPSTFRAQALLANQFFGRPTEQLNVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++S +  +  R G  +  IG            +  TTP+ + L +  + +
Sbjct: 110 AVTGTNGKTTISSLISDLLMRLGHKTGLIGTLHYKVDQTYYPSINTTPNALALQQLFAEM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA----KMRL 233
            S G     +EASSH L   RL    +    FTNL R+H+D+H+T + Y  A      +L
Sbjct: 170 VSVGCQDALIEASSHALALGRLWATDIDCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQL 229

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            ++   +     I   D     +M +A +A     S+       +  ++      Q   +
Sbjct: 230 GQKFAGEGPRLAIINADDPYASIMMQATSADVLTYSLEDPKASAYADQLAVQDGNQTFRL 289

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               + +  + P+ G + V N + A         +    V++ +     V GR + +   
Sbjct: 290 HYRNQTYQVVSPMLGAYNVANFMAAFLCLVDYYHVQPQTVVDLMLSFGGVEGRMQRLDLG 349

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLAD 411
               ++ VD+AHT +++E +L+ ++  +  R++ + G  G +RD G RP +G    + +D
Sbjct: 350 QE-FQVVVDFAHTPDAIERVLQELKAQSPKRLVTIIGHSGGNRDSGARPEIGDKVFEYSD 408

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I T DNPR E   KI AE+I       +    +R  AI   I      D+LV AGKG 
Sbjct: 409 WIIFTADNPRHEPVAKICAELIGNHDEVPYQVIEDRKAAIDYVISQAQAGDLLVFAGKGS 468

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           E   I+ + +K    +   I    
Sbjct: 469 EPYQIIGD-DKLPYDEVTEIEAAF 491


>gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
 gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
          Length = 507

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 150/483 (31%), Positives = 224/483 (46%), Gaps = 22/483 (4%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +  +  +  V+  S+ ++ G ++ A+ G +  G  F   A   GA A++   A     
Sbjct: 27  PEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAVALLTDPAG---- 82

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139
            +    +  P+LVV + R  L   A+ +YG       ++ VTGT+GK+S +  V+   + 
Sbjct: 83  VALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRA 142

Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G  +  IG   T       D+  TTP    L   L+     GV  V +E SSH L   R
Sbjct: 143 AGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGR 202

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G++   G +TN G DH+D+H  +  YF AK +LF+    +    ++  DD   + + K
Sbjct: 203 VGGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG---RCRVEVLNHDDPALRPLHK 259

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317
                     + G          +      Q+ T+             LPG   V NAL+
Sbjct: 260 ---PGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  L +A+G+D       +     VPGR E V +     R  VDYAH +N++E +L  +R
Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELV-SGDAPVRGVVDYAHKANAIEAVLIALR 375

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---- 433
            +T GR+I V G GGDRD+GKRP+MG +A   AD+ +VTDDNPR+EDP  IRAE++    
Sbjct: 376 DLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAGAY 435

Query: 434 --HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   IE   R  AI  A+ M    DV+ V GKG E    +  GE     D   +  
Sbjct: 436 AAATPARVIEVPGRRAAIEEAVRMAEPGDVVAVLGKGQERGQEIG-GEVLPFDDRVELAA 494

Query: 492 ILG 494
            L 
Sbjct: 495 ALR 497


>gi|167904396|ref|ZP_02491601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 514

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 220/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGRI---IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R    I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARSGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phytofirmans PsJN]
 gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia
           phytofirmans PsJN]
          Length = 515

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 144/480 (30%), Positives = 212/480 (44%), Gaps = 36/480 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            + +D+R + AG  F A      DG     FI  AI +GA A++V           +   
Sbjct: 30  HLHADTRSLAAGDAFFAY---AVDGADNRPFIEGAIERGAAAVLVQPEGFSGAIDPSNT- 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQ 146
               L V    +     AS  Y    +++L   VTGT+GK+S + ++       G     
Sbjct: 86  ----LAVPALNELAGSIASGWYNDPSDSMLTLGVTGTNGKTSCSQWISAALTALGTRCAI 141

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   +           TTP    L ++L+ L   G   V++E SSH L Q R++G    
Sbjct: 142 IGTLGSGLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFD 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+DYH T +AY  AK RLF      +  A +   D  +   +  +     
Sbjct: 202 IAVFTNLTQDHLDYHHTFEAYEAAKARLFAW---PDLRAAVINRDDAAGRRLLASTQGHA 258

Query: 266 RVLSVGYQGKFIHLKKVCA----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           R ++ G         K  A                   + +  + +      G F V N 
Sbjct: 259 RTIAYGLDDTLQDAPKADALLLASNVRATATGTAFHLSTSDWGNAEVEVQTLGAFNVSNL 318

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMIL 373
           L   G  +A  +     +  L KL  V GR + +G   +       +DYAHT ++LE  L
Sbjct: 319 LGVLGALLAADVPFNAAVAELAKLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTL 378

Query: 374 KNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + +R + + R   +I +FGCGGDRD  KRP+MG IA  +AD  +VT DNPRSEDP+ I  
Sbjct: 379 EALRPMATARGGELICMFGCGGDRDATKRPLMGAIAEKIADGVVVTSDNPRSEDPQAIIE 438

Query: 431 EIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 439 QIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 497


>gi|237813924|ref|YP_002898375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
 gi|237503508|gb|ACQ95826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
          Length = 514

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   AI+  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AIVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|134280166|ref|ZP_01766877.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
 gi|134248173|gb|EBA48256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
          Length = 514

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|254199058|ref|ZP_04905473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
 gi|169656888|gb|EDS88285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
          Length = 514

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|83720483|ref|YP_441661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|257137830|ref|ZP_05586092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|83654308|gb|ABC38371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
          Length = 514

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 219/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R +QAG +FVA      DG     FI  A+A+GA A++    Y  + F A     
Sbjct: 31  LHADTRSLQAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDP 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHC--AVVNRDDPAGRRLLANLVGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  +E+L  V GR + +G   +       VDYAHT ++LE  L+ +R
Sbjct: 322 GTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P+KI  +I+ 
Sbjct: 382 PIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 516

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 162/519 (31%), Positives = 239/519 (46%), Gaps = 41/519 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV---GNK-EDGHLFIPQ 62
           +  D   LI+ L        +     V +DSR IQ+G IF A     GN   DG  FI  
Sbjct: 5   LKIDTNRLIDHLHTLANSSAK-----VCADSRQIQSGDIFFAYPVGHGNALRDGRQFINA 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+  GA A+V    + L+D  + +  +     V N         S+ YG   +  NI+ V
Sbjct: 60  ALENGAAAVV----FDLKDMDSQLTDHPQCFAVKNLAAQAGQLCSQWYGHPSKELNIIGV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+S+  ++ Q    S   +  +G   T           TTP    L   L+ L +
Sbjct: 116 TGTNGKTSITQWLAQALDASNHRTAVLGTLGTGFPGALVQTGYTTPDAPKLQTQLAELRN 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G   V++E SSH L Q R+ G  +   +FTNL +DH+DYH +   Y  AK +LF++   
Sbjct: 176 AGAKQVAMEVSSHALHQERIAGTDIQCAAFTNLTQDHLDYHGSMGDYAEAKAKLFQQAGL 235

Query: 240 KESPAIIY-------ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN----- 287
           K +   +        A +  +K+ MK    A       G++     L+++ A        
Sbjct: 236 KHAVINLDDAFGRELAMNLLAKDGMKVWAYALSPSAFEGFEKFGDRLQRIYAKETTLSGA 295

Query: 288 -KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               + +  +        PL GEF V NAL      ++ G+   +  + + +L+ V GR 
Sbjct: 296 GYDSIFVYGKVGSAQLHIPLLGEFNVSNALAVWATLLSQGMRCEVAAQKVSQLNPVLGRM 355

Query: 347 EFVGTNSRGGR----IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKR 399
           E +              VDYAHT ++LE  L+ +R +     G+I  VFGCGGDRD GKR
Sbjct: 356 ELIRFGKPQKAGSLLAVVDYAHTPDALEKTLQALRPVADQRGGKIWCVFGCGGDRDAGKR 415

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEM 455
            +MG +A   AD  ++T DNPRSEDP+ I   I  GI           +R  AI  AI  
Sbjct: 416 ALMGAVAERNADHILITSDNPRSEDPQAIMQMIRGGIQAESQNIQMIADRAAAIMAAIRH 475

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            + +D+++VAGKGHET   + NG+K    D + IR   G
Sbjct: 476 ADARDIVLVAGKGHETTQEI-NGKKFDFSDQEHIRLAAG 513


>gi|167825935|ref|ZP_02457406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 9]
 gi|226199593|ref|ZP_03795149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225928339|gb|EEH24370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 514

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLTGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|227488524|ref|ZP_03918840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091418|gb|EEI26730.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 507

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 140/502 (27%), Positives = 208/502 (41%), Gaps = 23/502 (4%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I +   E   +L        + +++ ++ +    +   +F A+ G +  G  F   A + 
Sbjct: 5   IERIATECAGEL-HLRQGSPDLEVSHIAINGADARPDGLFAAVAGTRSHGAKF---AGSS 60

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
            A AIV        +   T     P++V D+ R  L   ++ + G     +  + +TGTS
Sbjct: 61  QAAAIVTDKPGY--EILKTAGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTS 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ +  ++     +G +   IG T T  +       LTTP    L +    +   GVT
Sbjct: 119 GKTTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVT 178

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           HV +E SSH +   R+ G+      FTNL +DH+D+H T + YF+ K +LF    P  + 
Sbjct: 179 HVVMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAK 238

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             I   D      + R        +S            +    +               +
Sbjct: 239 KSIICVDDKWGVDLTRLAGPAATTVSTKGAPANFMATDIETEPDGTSQFTVAYKGKKQRV 298

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                          A    A                 VPGR E +  N +G    VDYA
Sbjct: 299 TLHIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANIQVPGRMEKI-DNDKGVLAVVDYA 357

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +LE  +K +R    GR+I VFG GGDRD GKRPIMG  A+  AD+ I+TDDNPRSE
Sbjct: 358 HKPAALEAAIKAVRDEVEGRVIAVFGAGGDRDHGKRPIMGSAAVAGADVVIITDDNPRSE 417

Query: 424 DPEKIRAEIIHGIPGFIE------------KGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DP  IR  I  G   F+              G+R +AI  A+      D ++VAGKGHE 
Sbjct: 418 DPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQAIALAVNKSQAGDAIIVAGKGHEQ 477

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             +V  GE +   D   +R  L
Sbjct: 478 GQLVG-GEMRDFDDRIKLRRAL 498


>gi|167721348|ref|ZP_02404584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei DM98]
 gi|167912657|ref|ZP_02499748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 112]
          Length = 514

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   AI+  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AIVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|167618576|ref|ZP_02387207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis Bt4]
          Length = 514

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 219/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R +QAG +FVA      DG     FI  A+A+GA A++    Y  + F A     
Sbjct: 31  LHADTRSLQAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAAGLDP 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T  AY  AK +LF         A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHC--AVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEADVEVGTLGTFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  +E+L  V GR + +G   +       VDYAHT ++LE  L+ +R
Sbjct: 322 GTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLEALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P+KI  +I+ 
Sbjct: 382 PIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEEPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|254180541|ref|ZP_04887139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
 gi|184211080|gb|EDU08123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
          Length = 514

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG        + VTGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   AI+  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AIVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|53726027|ref|YP_104099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|67643634|ref|ZP_00442379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|76812034|ref|YP_334920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121598737|ref|YP_991826.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|124384687|ref|YP_001027319.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10229]
 gi|126448584|ref|YP_001082744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998642|ref|ZP_02264500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|167740317|ref|ZP_02413091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 14]
 gi|217425702|ref|ZP_03457192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|254178840|ref|ZP_04885494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|254191017|ref|ZP_04897523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254202820|ref|ZP_04909183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|254208162|ref|ZP_04914512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|254258612|ref|ZP_04949666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
 gi|254299371|ref|ZP_04966821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|254357634|ref|ZP_04973908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|52429450|gb|AAU50043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|76581487|gb|ABA50962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121227547|gb|ABM50065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|126241454|gb|ABO04547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747067|gb|EDK54144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|147752056|gb|EDK59123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|148026698|gb|EDK84783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|157809125|gb|EDO86295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|157938691|gb|EDO94361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160694754|gb|EDP84762.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|217391290|gb|EEC31322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|238525013|gb|EEP88443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065321|gb|EES47507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|254217301|gb|EET06685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
          Length = 514

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG        + VTGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|53720640|ref|YP_109626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
 gi|167817535|ref|ZP_02449215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 91]
 gi|167896010|ref|ZP_02483412.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 7894]
 gi|167920624|ref|ZP_02507715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei BCC215]
 gi|52211054|emb|CAH37042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
          Length = 514

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG        + VTGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
 gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
          Length = 485

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 116/476 (24%), Positives = 206/476 (43%), Gaps = 14/476 (2%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E K+  + SDSR++    IF  + G   DGH +I  A+ QGA+ IV S   + +     
Sbjct: 6   EEFKVVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYKHR--- 62

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS 143
                  + V+N    L+  A   Y      +  + VTG+SGK+ VA  ++++       
Sbjct: 63  ---GVLYIKVNNVLDELNRVADVFYDHPSYKMTMIGVTGSSGKTVVALMIKEVLSHYLKM 119

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            +        +   +    TTP  I++ + L+ +  + V  V++E SSHGL   R+DG+ 
Sbjct: 120 GYIGTNNIEYAGVIEQCPYTTPETIFMQRHLNDMVKRDVKGVTLEVSSHGLALKRVDGVH 179

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                FTN+  +H+D+H T +    +K +LF  +  K    +    D      + +    
Sbjct: 180 FDIAIFTNVYEEHLDFHGTMEHLMASKAKLFTLIDEKGYAIL--NTDEVRFYNLVKDSIR 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +         +  + +    +  +  + +         P+ G F + N L      +
Sbjct: 238 CHLLTYGIEHKAHVMARNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNISNVLAVITSML 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           A+ +    VLE +  +  V GR E +        + VDY   + S E + +  +++  +G
Sbjct: 298 ALEMPMDQVLESVGYIRGVDGRMELLEHPY-PFTVIVDYCQHAKSFEKVFQFAKSVQTNG 356

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
           RII VFG  G ++  KR  +GK+A    +  I+T ++ R ED   I  +I   +     +
Sbjct: 357 RIIAVFGAPGKKNYNKREKIGKLANQYCNQVILTAEDNRDEDIHDICLDIQEYLEKPVSV 416

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
              +R  AI  AIE+ N  D++++ GKGHE     + G +    D  +  E +  I
Sbjct: 417 IIEDRRIAIEQAIEIANHGDIILILGKGHEQFMASSIGNEPYPGDKYVALEAIDKI 472


>gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein
           [UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase ( MurF);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (MurE) ] [Thiomonas sp. 3As]
          Length = 975

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 146/469 (31%), Positives = 212/469 (45%), Gaps = 15/469 (3%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S+DSR +Q G +FVA  G   D   F+ QA+     A   ++    +       ++  IL
Sbjct: 27  SADSRSLQPGEVFVAWPGAARDPRQFVTQAL----AAGAAAALVEAEGVQHFGFTDPRIL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            VD  +      A+  YG   E   +LAVTGT+GK+S A +  Q    +G     IG   
Sbjct: 83  AVDGLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLG 142

Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  Q    TTP P+ L   L+ L  QG    ++EASS GLD+HRL G  + A +FT
Sbjct: 143 AGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAFT 202

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH    AY  AK  LF     + +   I    A S  +            + 
Sbjct: 203 NLTQDHLDYHGDMAAYARAKRALFVWPGLQHAVLDIDDPYAASVLLADCRSRGLQVQTTA 262

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                    + V      Q++T+           P+ G F + N LV A L    G+D A
Sbjct: 263 LIAKTDWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLHTTGLDDA 322

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVV 387
            +   L  +  VPGR + +G         +DYAHT ++L+  L+ +R +     G++  V
Sbjct: 323 AIAAALRTVRAVPGRMQMLGGIGAPL-AVIDYAHTPDALDKALQALRPVTAKRKGKLWCV 381

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444
           FG GGDRD  KRP+M +     AD  ++T DNPRSE P  I  +++ G+      +   +
Sbjct: 382 FGAGGDRDARKRPLMAQAVEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPAQALLIED 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R  AI   +      DV+++AGKGHE    +  G K+   D    R  L
Sbjct: 442 RAAAIAQTLSHAAVHDVVLIAGKGHENTQEIA-GHKQAFSDAFHARMAL 489



 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 129/394 (32%), Gaps = 31/394 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  ++ + +DSR +  G +FVA+ G + D H F+PQA A          A +L      
Sbjct: 516 AEVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAA--------GARALLAEQGV 567

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P +   +T + L L A     +    ++AVTG++GK++V   +  I         
Sbjct: 568 GACGLPGIEAPDTLRALGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWQGQDR 627

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++      ++                 A+  L       ++  AS            +  
Sbjct: 628 RLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLA----------EPT 677

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N  R+H ++  + +A  +         LP+   A+  A DA +   + +A     
Sbjct: 678 VALVNNAQREHQEFMHSVEAVAHENG-AVLAALPQTGVAVFPAADAQAAIWVAQAAGRRV 736

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              ++  + +     +V      +     V +       +    L G     NAL A   
Sbjct: 737 LRFALREEAEADVEAEVSGHAFYRQGQLHVQLHTPAGHAEVGLQLLGRHNARNALAATAA 796

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----YVDYAHTSNSLEMILKNIR 377
            +A G     +   LE    V GR                    Y    +S+   +  + 
Sbjct: 797 ALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADEHTLLLIDDSYNANPDSVRAAIDVLT 856

Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
            +  GR +++ G     GD        +G  A  
Sbjct: 857 EL-PGRSLLLLGDMGEVGDNGPAFHAEVGTYAAQ 889


>gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 575

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 144/497 (28%), Positives = 225/497 (45%), Gaps = 24/497 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  +L   P      ++  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 66  LGELAARLGAGPQDAG--EVTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGAAA 123

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSS 128
           I+   A + +       +  P+LV D+ R  +   A+ +YG+       + +TGTSGK++
Sbjct: 124 ILTDPAGAER----AAATGLPVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTT 179

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G S+  IG            +  TTP    L    + +  +GV  V++
Sbjct: 180 TAYLVEGGLRGAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 239

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     K       
Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSKLGVVNF- 298

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306
            DD Y + ++  A        + G+       + V         T+     +      PL
Sbjct: 299 -DDEYGRRLVDEASVPVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKAPL 357

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       GID  +  + +  +  VPGR E +          VDYAH +
Sbjct: 358 PGPFNVANTLAAIVTLAVAGIDPQIAADGVAGVPGVPGRLERIDAGQ-PYLAVVDYAHKT 416

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I A ++ G         R + +           A+      D ++VAGKGHE    + +
Sbjct: 477 GILAAMLSGAAEVPVHE-RGDVLVDADRAAAIAAAVARAEPGDTVLVAGKGHEQGQDI-H 534

Query: 478 GEKKMSVDCDIIREILG 494
           G  +   D  ++RE + 
Sbjct: 535 GVVRPFDDRKVLREAIE 551


>gi|126452893|ref|YP_001067791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|167847421|ref|ZP_02472929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei B7210]
 gi|242316322|ref|ZP_04815338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
 gi|126226535|gb|ABN90075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|242139561|gb|EES25963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
          Length = 514

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 150/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAEGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG        + VTGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AVVNRDDPAGRRLLANLTGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|126441714|ref|YP_001060540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
 gi|126221207|gb|ABN84713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
          Length = 514

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 152/482 (31%), Positives = 221/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A    +
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPADGLDS 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF     +   AI+  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRC--AIVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDSPTPAADADRELVATNVRATATGTAFRVTSAWGEADVEVGTLGAFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + KL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   +I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELICMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+    G     +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
          Length = 492

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 121/488 (24%), Positives = 193/488 (39%), Gaps = 19/488 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L+       + KI  + SDSR+++   IF  I G   DGH ++  AI QGA+ IV S
Sbjct: 1   MKRLNELFKVESDLKIESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHS 60

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASF 132
                             + V +    L+  A   Y      +  + VTGTSGK+ VA  
Sbjct: 61  KPL------RRYYQGIVYVQVPDVLDELNRVADLFYDHPSYKMTGIGVTGTSGKTVVARV 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V ++  R     +         +       TTP PI L +    +  + V   ++E SSH
Sbjct: 115 VARLLGRYLKMGYVGNNGIEYGATMMQMTGTTPDPICLHRNFYNMVKENVKGFTLEVSSH 174

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYAD 249
           GL   R+D +      FTN   +H+D+H T      +     RL +E       A     
Sbjct: 175 GLALKRVDSVNFSIVVFTNAYEEHMDFHGTIDNLMVSYEKLFRLLQEGGYAILNADEVRF 234

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +     K        +    +    I  + +    +     I ++ + F    P+   
Sbjct: 235 NHFLSMNYKDLSEHAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAP 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY---AHTS 366
           F + N L       A+ +    ++  ++ +  V GR E V        I VDY   AH  
Sbjct: 295 FNISNTLAILTTLYALEMTPEEIVNAIKYIQPVEGRMEVVPVKQ-PFHIIVDYCQHAHNF 353

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +   +  ++   +G +I VFG  G +D  KR  +G +A    D  I+T+ + R +D E
Sbjct: 354 EEVFKFVYGVKG--NGHLIAVFGAPGRKDIHKRSKIGALANKYCDYVILTEQDERDDDIE 411

Query: 427 KIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
            I  +I   I   I     NR  AI+ AI+     DV+++ GKGHE       G      
Sbjct: 412 GICEQIQEQIVDPISVIITNRRFAIQQAIDAACAGDVILILGKGHEQFMTSLVGNTPYPG 471

Query: 485 DCDIIREI 492
           D  I +E 
Sbjct: 472 DKFIAQEY 479


>gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
 gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
          Length = 501

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 222/475 (46%), Gaps = 26/475 (5%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   + +DSR +  G  F+A  G   DG   +  A+A+GA A +V      +D      
Sbjct: 20  RVTGTLQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMARGAVACLVEQ----EDVEPFGL 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS-- 143
           +   I  +   +    L A++ +G+  E   +LAVTGT+GK+S A ++            
Sbjct: 76  AGEHIAALPGLKAATGLIAAQWFGRPSERLQVLAVTGTNGKTSTAWWLADALNGLSKKEL 135

Query: 144 -----SFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                   +G     +        +TTP P+ L +A +  + +G+   ++EASS GL + 
Sbjct: 136 PALAGCALVGTLGIGVPPGLSSTGMTTPDPVRLQRAFAQFAQEGLGACAIEASSIGLAEQ 195

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL G ++    FTNL +DH+DYH    AY+ AK  LF+   P    A++  DDA+   + 
Sbjct: 196 RLAGTQISVALFTNLTQDHLDYHSDMAAYWQAKRVLFDW--PGLRAAVVNIDDAHGARLH 253

Query: 258 KRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                 G  + SV  QG      + +         T++   +       L G + V N L
Sbjct: 254 AELQGGGLDLWSVSIQGPARLQARDIVHRGAGLAFTVAESAQALPLQTRLIGLYNVSNLL 313

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                  A+G+  A  L+   +L  VPGR E +    +   + VDYAHT ++L   L  +
Sbjct: 314 GVIAGMRALGVPLAQALDACARLAPVPGRMEQLAFAGQPL-VAVDYAHTPDALHQALAAL 372

Query: 377 RTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R +     GR+  VFGCGG+RD GKRP+MG +A   AD  IVT DNPR EDP  I  +I+
Sbjct: 373 RPMAAQRGGRLWCVFGCGGNRDAGKRPLMGAVAQREADRVIVTSDNPRGEDPRAIIHQIL 432

Query: 434 HGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
            G         + +R  AI  A+      DV+++AGKGHE       G+++   D
Sbjct: 433 LGTIAGTSVRAEEDRAAAICLAVAEAEAADVVLIAGKGHEDYQETA-GQRQPFSD 486


>gi|167838009|ref|ZP_02464868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis MSMB43]
          Length = 514

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 219/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +FVA      DG     FI  A+A+GA A++    Y  + F A     
Sbjct: 31  LHADTRSLRAGDVFVAY---AVDGADNRPFIADALARGAAAVL----YQPEGFPAGGLDP 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 84  ATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVI 143

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   +           TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGLPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T  AY  AK +LF     +   AI+  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLRC--AIVNRDDPVGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        ++    + D      G F V N L   
Sbjct: 262 IAYGIDARRQAADADRELVATNVRATATGTAFRLTSPWGEADVEVGTLGTFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  +EKL  V GR + +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIEKLESVNGRMQRLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I+ 
Sbjct: 382 PIAQARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVA 441

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+          +R  AI  A+    ++DV+++AGKGHE+   +  G+K+   D D  R 
Sbjct: 442 GMQDAANARRVEDRASAILQAVRGAAREDVVLLAGKGHESTQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 506

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 144/494 (29%), Positives = 223/494 (45%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL +QL     +    ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELADQLGSSAPESA-AEVTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAAA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++     + +       S  P+LVVD+ R  +   A+ +YG    +   + +TGTSGK++
Sbjct: 76  VLTDPTGAER----AAASGLPVLVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   +    +         I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLVEGGLKTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF     K        
Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRGKLGVVN--V 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           DD Y + ++  A        + G+       + V         T+     +      PLP
Sbjct: 250 DDEYGRRLVNEATVPVVTYSAEGHPDADWRAEDVEVGQLDSTFTVVGPKGERISAKSPLP 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A       G+D     + +  +  VPGR E V          VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T G++ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTEGKLHIVLGCGGDRDTTKREPMGAAAARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLQGAASVPAYERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRQVLREAI 501


>gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Delftia acidovorans SPH-1]
 gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans
           SPH-1]
          Length = 509

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 139/479 (29%), Positives = 221/479 (46%), Gaps = 26/479 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++ G  F+A  G   DG   +  A+ +GA A +V +    Q   A   S   I
Sbjct: 30  LQTDSRKVRPGDAFIAWPGGATDGRAHVASALERGAMACLVEA----QGVEAFGFSGEHI 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLS----SFQ 146
             +   +    L A + +      I  LAVTGT+GK++ A ++     +  L        
Sbjct: 86  AALPGLKAATGLIADQWFQHPSAQIDVLAVTGTNGKTTTAWWLAHALAQVKLQERSGCAL 145

Query: 147 IGPTSTISSFAQD-NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G        A +   +TTP P+ L +A    +  G+   ++EASS G+ +HRLDG ++ 
Sbjct: 146 VGTLGVGIPPAMESTGMTTPDPVRLQRAFREYADAGLAACAIEASSIGIVEHRLDGTRIR 205

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTN  +DH+DYH + QAY++AK  LF+   P    A++  DDA+   +     +   
Sbjct: 206 VALFTNFTQDHLDYHGSMQAYWDAKAALFDW--PGLQAAVVNVDDAHGARLWATLQSRKQ 263

Query: 266 R-----VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                           +  K +         T+   G        + G++ V N L    
Sbjct: 264 PAALDVWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSLRMHTRMVGQYNVSNLLGVLA 323

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--- 377
               +G+     +     L  VPGR + +    +   + VDYAHT ++L+  L+ +R   
Sbjct: 324 ALRCLGLTLDQAVAACVHLEPVPGRMQQIVQPGQPL-VAVDYAHTPDALDKALRALRPAA 382

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               GR+  VFGCGGDRD  KRP+MG+ A   AD  +VT DNPRSE P++I  +I+ G+ 
Sbjct: 383 EQRRGRLWCVFGCGGDRDATKRPLMGQAAQKNADCVLVTSDNPRSEVPDRIIDQILAGMQ 442

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  + +R  AI  AI   +++DV+++AGKGHE       G++    D     + L
Sbjct: 443 PGENLQSQADRAAAIAQAIAHASERDVVLIAGKGHEDYQETA-GQRHPFSDMAEAHKAL 500


>gi|293402023|ref|ZP_06646162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304415|gb|EFE45665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 489

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 133/488 (27%), Positives = 227/488 (46%), Gaps = 22/488 (4%)

Query: 14  LINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L   L +  +   + +I   VS DSR ++  W+FV   G   DG  +I  A+ +GA  ++
Sbjct: 4   LNELLGMLHIACDDTRILQGVSDDSRKVKKDWLFVCRKGITHDGAAYIDDALRKGAV-VL 62

Query: 73  VSSA-----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
                       +  + + +    +   ++            +G   +   ++ V+GTSG
Sbjct: 63  CDKKRQWRKNGQKVEATSHQEKEQVYACEDVEAIAQALIELYFGDLCKHLCVIGVSGTSG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SVA  +  I ++    +F+IG      +   Q    TTP    LA  L     QG TH
Sbjct: 123 KTSVACIITHILRKQQKKTFRIGTHEVDDNQHIQAIPNTTPDSFTLANLLKEAIQQGFTH 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E SSH +DQ+R+  +   A  +TN+ +DH+DYH T+  Y   K +L   L       
Sbjct: 183 IVMEVSSHAIDQNRICFMSYDAIVYTNITQDHLDYHFTRTHYMYTKFKLRRYLKKDGFII 242

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I    +     +MK  H +  +++++G+      ++ +         TI+     + F+ 
Sbjct: 243 I----NKDFPYLMKLQHLSDAKLITIGFDAAHFTIEDMHLSEQGAIFTING----YSFVI 294

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G+  VYN   A  LC  + I    ++   + L  V GR E +        + +DYAH
Sbjct: 295 PLLGKMNVYNTTEAIALCHMLNITYEQLIASCQDLPYVSGRMELMKGK--KHTVLLDYAH 352

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T +++E +++  R+I  G++ +V GCGG+RD+ KR +M   A   +D+AI T DNPR E 
Sbjct: 353 TPDAVEKLMEFARSICQGKLYIVVGCGGERDRSKRKLMADAACKYSDMAIFTSDNPRHES 412

Query: 425 PEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              I  ++       +    NR  AI+  I++  + D++V+AGKG+E    V  G     
Sbjct: 413 LSTILLDMCKTTYQNYEVVENRYFAIKYTIKIAKESDIIVIAGKGNEKTQDVE-GRMYPF 471

Query: 484 VDCDIIRE 491
            D D +R+
Sbjct: 472 DDADCVRK 479


>gi|167564204|ref|ZP_02357120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis EO147]
          Length = 514

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 217/482 (45%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R +QAG  F+A      DG     FI  A+A+GA A++     S  D      S 
Sbjct: 31  LHADTRSLQAGDAFIAY---AVDGADNRPFIADALARGAAAVLYQPEGSAADGLEPATS- 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 87  ---LAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIAAALTALHQPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTLEAYEAAKTKLFAW--RGLRLAVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +   KV A        ++    D D      G F V N L   
Sbjct: 262 IAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  +EKL  V GR E +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAAIEKLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I  
Sbjct: 382 PIARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIAA 441

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|319941796|ref|ZP_08016118.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804729|gb|EFW01596.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
          Length = 510

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 162/489 (33%), Positives = 236/489 (48%), Gaps = 34/489 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR ++ G IF A+ G K DG  FI  A A+GA  ++  +  S +     + +   
Sbjct: 21  HLRLDSREVKPGDIFCAVPGEKVDGRTFIRVAAARGAAGVIYEAETSQRPEHYPLPAKP- 79

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              V++ R+ L   A+R Y +   ++  +AVTGT+GK++   +   +    G  S  IG 
Sbjct: 80  ---VEHLRERLGEIAARFYDEPSAHMTGVAVTGTNGKTTTTFWTASLLTALGSPSGIIGT 136

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                         LTTP    L   L  L   G     +EASS GLDQ R+ G     G
Sbjct: 137 VGVFFAGRQIPAPHLTTPDAASLQGILKDLEETGAKSFVMEASSVGLDQGRMKGTHFKVG 196

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL RDH+DYHQT +AY  AK  LF    P    A++ A DA+S++    A   G  +
Sbjct: 197 VFTNLSRDHLDYHQTMEAYGEAKGLLFAW--PGLKAAVLNASDAWSRKYADAAQKNGSEI 254

Query: 268 LSVGYQG------------KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              G +G              +  K++   H   + T+  + ++F       G F V NA
Sbjct: 255 WVTGLEGEAASFGQAFGAAHVLEAKQIEPSHRGMRFTLVCDKREFPVELHALGTFNVDNA 314

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L AA    A G     V+  LE L   PGR +   ++       VD+ HT ++LE  ++ 
Sbjct: 315 LEAAAAAAACGHPIEKVVRALEALTPPPGRMQIFESDGMPL-GVVDFGHTPDALEKAIEC 373

Query: 376 IRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +        GR+  VFGCGGDRD GKRPIMG+IA  L+D  IVT DNPR+E+P+ I   I
Sbjct: 374 LIPNARARGGRLWTVFGCGGDRDAGKRPIMGEIAARLSDQVIVTSDNPRTENPQAIVDAI 433

Query: 433 IHGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           + G+          +   +R EAI  A+   + +D+++VAGKGHE   I+ +G     VD
Sbjct: 434 MQGVQAVPGADQRTMAVVDRREAIHRAVFAADAKDIILVAGKGHECEQILNDGP-HHFVD 492

Query: 486 CDIIREILG 494
            +++RE   
Sbjct: 493 GEVLREAFN 501


>gi|213024666|ref|ZP_03339113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 461

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 153/464 (32%), Positives = 226/464 (48%), Gaps = 24/464 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFA 291

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +    L G F V N L+A    +A+G     +L+   +L  V GR E   T   
Sbjct: 292 SSWGEGEIESCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVF-TAPG 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +
Sbjct: 351 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEM 455
           VTDDNPR+E+P  I  +I+ G+           R EA+  AI  
Sbjct: 411 VTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAISR 454


>gi|167571354|ref|ZP_02364228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis C6786]
          Length = 514

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 151/482 (31%), Positives = 215/482 (44%), Gaps = 31/482 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R +QAG  F+A      DG     FI  A+A+GA A++        D      S 
Sbjct: 31  LHADTRSLQAGDAFIAY---AVDGADNRPFIADALARGAAAVLYQPEGFAADGLEPATS- 86

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + + AV  TGT+GK+S   ++             I
Sbjct: 87  ---LAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGKTSCTQWIAAALTALHQPCAVI 143

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 144 GTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDV 203

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH+T +AY  AK +LF         A++  DD   + ++         
Sbjct: 204 AVFTNLTQDHLDYHRTLEAYEAAKTKLFAW--RGLRLAVVNRDDPAGRRLLANLAGRVRT 261

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +   KV A        ++    D D      G F V N L   
Sbjct: 262 IAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWGDADVEVGTLGTFNVSNLLAVL 321

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  +E L  V GR E +G   +       VDYAHT ++LE  L  +R
Sbjct: 322 GTLLAADVPFDAALAEIENLESVNGRMERLGGRLQNDEPLVVVDYAHTPDALEKTLDALR 381

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+KI  +I  
Sbjct: 382 PIARARGGELVCMFGCGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIAA 441

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G+          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D  R 
Sbjct: 442 GMQDAAQARRVEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRAFSDQDHARL 500

Query: 492 IL 493
            L
Sbjct: 501 AL 502


>gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
 gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
          Length = 486

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 134/507 (26%), Positives = 213/507 (42%), Gaps = 47/507 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKE-- 54
           M L++L      E                +  ++ DSR ++ G++FVA+ G    ++   
Sbjct: 1   MTLKELFAPLGQE-----------APPLPVRGLTQDSRRVEPGFVFVAVPGVPLPHRRPL 49

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DGH FIP+A+ +GA A+V     +L           P   V ++R+ L+L A R YG+  
Sbjct: 50  DGHAFIPEALRRGAIAVVGEQDLTLP---------VPYARVADSRQALALLARRFYGEPD 100

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +  VTG+ GKS+ A  +  + + + L S   G      +       TTP    +  
Sbjct: 101 RALRLFGVTGSKGKSTTAFLLHHLLEEAALLSTV-GLRLGGEARPPIGHFTTPEAPEVYA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L   + +G+    +E SSH L   R++G+    G F N   D             A   
Sbjct: 160 FLREAADRGLREAVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTPE---AYFN 216

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               L+ +   A++     + + + +R H        V  +G               + T
Sbjct: 217 AKTLLVERSDLAVLNTSLTHLERLRQRPHLLFGPGGEVWAEGVRE--------EEGLRFT 268

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +   PL G   V NAL A+   +A G+    VLE L     VPGR E V   
Sbjct: 269 LHTPWGKGEVHLPLIGAHNVENALAASAAALAAGVPLEKVLERLSGFPGVPGRMEVVQEK 328

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
               R+ +D+AHT  SLE  L+ +R  T GR+++V G  G+RD  +R  +G++A  LAD 
Sbjct: 329 --PFRVVIDFAHTGKSLEAALRTLRPTTQGRLLLVVGAAGERDPRRREDIGRVAARLADK 386

Query: 413 AIVTDDNPRSEDPEKIR----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A  T+++ R+ED   I              F    +R EAI  AI    + D +++AGKG
Sbjct: 387 AFFTEEDHRTEDLGAILEAMARAAAAEGGRFELVPDREEAILKAILEAQEGDTVLLAGKG 446

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495
           HE        E     + ++  + L L
Sbjct: 447 HEATLE-RGQEALPWNEREVALKALRL 472


>gi|262184484|ref|ZP_06043905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 517

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 152/506 (30%), Positives = 230/506 (45%), Gaps = 28/506 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
               L        +      ++    +S  +  G +F A+ G +  G  F        A 
Sbjct: 6   TLKRLAEISGGTVIGDASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADTE---AA 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           AI+  +        A      P+LVV++ R  L   ++ +Y    +   IL VTGTSGK+
Sbjct: 63  AILTDAEGKRILNDAG--EKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +  ++     +G S   IG T T  +       LTTP    L +  + + S+GVTHV 
Sbjct: 121 TTSYLLEAGLLHAGYSVGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVV 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G +   G FTNL +DH+D+H T + YF AK  LF+     +   I 
Sbjct: 181 MEVSSHALSLGRVQGTRFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADRSVI- 239

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-------EGKD 299
             DD + + + +RA       +S   QG    +                           
Sbjct: 240 CVDDEWGRRMAQRAAARPVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGT 299

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+F  P+PG F + NA +A G+  +IGI+  + LE +EK+ V PGR E V          
Sbjct: 300 FEFRLPMPGTFNIANAALATGMAASIGIEPQVFLEGVEKVAV-PGRMERVDRGQ-DFVAV 357

Query: 360 VDYAHTSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           VDYAH   ++  +L+ +R     ++GRI +V G GGDRD  KRP+MG  A   AD+ +VT
Sbjct: 358 VDYAHKPAAIAAVLETLRTQLEGSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVT 417

Query: 417 DDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           DDNPR+EDP  IRA ++ G           E G+R +AI   +      D ++V GKGHE
Sbjct: 418 DDNPRTEDPASIRAAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHE 477

Query: 471 TVHIVTNGEKKMSVDCDIIREILGLI 496
              ++ +       D + +   L  +
Sbjct: 478 VGQLIGD-TVHHFDDREEMARALEAV 502


>gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptothrix cholodnii SP-6]
 gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii
           SP-6]
          Length = 513

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 142/487 (29%), Positives = 213/487 (43%), Gaps = 35/487 (7%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR ++AG  F+A  G+  DG  ++  A+A GA A ++ +  +     A    +  I  
Sbjct: 28  TDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAA----AFGFDDERIAA 83

Query: 95  VDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           +   +      A R YG+    +  +A +GT+GK+S A +  Q    +G     IG    
Sbjct: 84  LPGLKAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWTAQALSLAGQRCGVIGTLGV 143

Query: 152 -------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                     +      LTTP P+ L ++L   +  G    ++EASS G+ +HRLD   +
Sbjct: 144 GEPPSRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAACAIEASSIGIVEHRLDAAPI 203

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               +TN   DH+DYH    AY+ AK  LF+   P    A I  DDA    +       G
Sbjct: 204 RVALYTNFTPDHLDYHGDMVAYWLAKRALFDW--PGLQAAAINVDDAQGAVLADELAARG 261

Query: 265 CRVLSVG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              L     ++   +    +  +      T+     D      L G +   N L   G  
Sbjct: 262 DLDLWTYALHRDARLRATGLHYVDGGLAFTLHEGETDVAVHTHLIGAYNASNVLAVIGGL 321

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGT----------NSRGGRIYVDYAHTSNSLEMI 372
            A+G+  A       +   VPGR   V                 ++ VDYAHT ++L+  
Sbjct: 322 RALGLPLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVVALPQVVVDYAHTPDALDKA 381

Query: 373 LKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L  +R +     GR++ VFGCGG+RD  KRP MG IA  LAD   VT DNPR E+P+ I 
Sbjct: 382 LSALRPVAHAQGGRLVCVFGCGGNRDATKRPQMGAIAAQLADAVCVTSDNPRLEEPQAIV 441

Query: 430 AEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            +I+ G  G        +R  AI   +     +DV+++AGKGHE    +  G K+   D 
Sbjct: 442 DQILAGCAGAAHVRAEVDRTRAIEQVLAQAAPEDVVLIAGKGHEDYQDIG-GVKRPFSDI 500

Query: 487 DIIREIL 493
           D+    L
Sbjct: 501 DVATAAL 507


>gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
 gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
          Length = 514

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 132/510 (25%), Positives = 223/510 (43%), Gaps = 28/510 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  + ++     +L   +        E +I  ++ DSR + + ++F A+ G   DG  FI
Sbjct: 9   MN-RKMLNNILSKLDKNMIKEVRGSCEVEILGLTYDSRCVLSRFVFFALPGLHFDGQKFI 67

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPEN-- 116
             AI QG+  IV ++     D       N   + +D  N ++F+S F+   Y +  +   
Sbjct: 68  ESAIQQGSNVIVHTNDIDSYD------PNVTYIKIDACNIKRFMSNFSHIFYDEPSKKLK 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAK 172
           I+ VTGT GKSSV  ++  + +  G+    I        + +      R +TP    +  
Sbjct: 122 IIGVTGTDGKSSVCFYIYTLLKSMGVKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIHL 181

Query: 173 ALSYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            LS +    V +  VE++SHGLD    RL  I       TN+  +H+++H T Q Y NAK
Sbjct: 182 VLSKMVENNVEYAIVESTSHGLDARTSRLIDISYSVAVLTNISHEHLEFHGTMQHYLNAK 241

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + LF          I+  DD      +   +       S+  +     + K+       +
Sbjct: 242 LNLFSSADANGGFGIVNMDDNNFSVFLNAINR--VYTYSLENKNADFFVSKINEQMGFIE 299

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFV 349
                +   +D    L G F V N + A  +    + I  + ++E L  +  + GR + V
Sbjct: 300 FEFYHKDVKYDARVNLTGSFNVENVMAALIVVSQVMNIHISELIEKLVNVEGLCGRMQGV 359

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + +DYAHT  +   I    + +   R+I VFG  G+RD  KR + G+IA   
Sbjct: 360 DFGQ-DFSLIIDYAHTPGAFLKIFPMFKRLAKNRLISVFGSAGERDTFKRKLQGEIADRY 418

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +DI I+ D++PRSED  +I  +I  GI             +R  AI  A+++    D++V
Sbjct: 419 SDIIILCDEDPRSEDSMQIIRDIAEGISGKTLNKDLFFIPDRRSAIEKAVDIAYAGDLVV 478

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             GKGHE+  I  +       +  +I++I+
Sbjct: 479 TLGKGHESSIIYED-RSIFWDEQAVIKDII 507


>gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 513

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 132/499 (26%), Positives = 230/499 (46%), Gaps = 35/499 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+++++       +  L       +  ++  ++ +S  I+ G++F+AI G K+DGH++I
Sbjct: 27  MKIKEMLT------MGHLEYSDTLDQSLEVKGITDNSNEIKPGYVFIAIKGYKKDGHIYI 80

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QAI  GA  I+  +          +    P L V + RK L   A   Y    ++  ++
Sbjct: 81  QQAIINGAILIIGENEL--------MNLEVPYLKVKSARKALGQVAKLFYKDPSKDKIMI 132

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++++ F++ + ++ G S   IG   + I+        TTP+   + +    L
Sbjct: 133 GITGTNGKTTISFFIKHLLEKQGYSVSSIGTIHNEINGKKIKTINTTPNAKTINQ---LL 189

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +     V +E SS GL+Q RL+GI+     F NL  DH+DYH T + YF  K  LF++ 
Sbjct: 190 VASTDQVVVMEVSSQGLEQDRLEGIQFDYALFNNLQHDHLDYHNTMEEYFECKALLFQK- 248

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L     AII +DD++  ++++     G ++L+VG Q                 V++  + 
Sbjct: 249 LKPNGTAIINSDDSWGLKLIEHLTAEGKKILTVGEQSFSNV---QILSKELNDVSVMHKN 305

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            ++    PLPG   +YN  +++     +G+    V  ++     + GRFE          
Sbjct: 306 MEYSLRTPLPGMHNLYNLSMSSCAVHELGVPYEKVKPYMSDFTGISGRFELFHLE-NNVT 364

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++LE+ +       +  II VFG  G+RD  KR  M +I   L+D +I+T 
Sbjct: 365 VVVDYAHTPDALEIAINTAINNGANHIITVFGFAGNRDTSKRKAMLEIVTRLSDSSILTV 424

Query: 418 DNPRSEDPEKIRAE---IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                   +K+  +   I              +R  AI+ AI+     D +++ GKGHE 
Sbjct: 425 TELFGSTIDKLYTDYVMIQKECQVEDSTSIIMDRTLAIQKAIKDAQPGDWVLLLGKGHEL 484

Query: 472 VHI-VTNGEKKMSVDCDII 489
                    K    D + +
Sbjct: 485 YKENYNLNTK---SDQETV 500


>gi|148651952|ref|YP_001279045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Psychrobacter sp.
           PRwf-1]
 gi|148571036|gb|ABQ93095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. PRwf-1]
          Length = 569

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 151/524 (28%), Positives = 238/524 (45%), Gaps = 60/524 (11%)

Query: 27  ERKINEVSSDSRHIQAGWI------FVAIVGNKE---DGHLFIPQAIAQGAEAIVVSSA- 76
           +   ++   DSR +           FV +    +       ++  A+ Q A  I+     
Sbjct: 38  DVPFSKFVLDSRQLAKRDASSAPAAFVLLKSQTQPLQKSQQYVQTALPQ-AAFIISEIDP 96

Query: 77  ----YSLQDFSATIRSNTPILVVDNTRKFLSLF----------------ASRLYGKHPEN 116
                   D  +    + PIL V + R  L                   A  L    P  
Sbjct: 97  QQLGLEGLDKPSDSSPDCPILFVPDIRDVLGTLIQLSLLSDDALSQIGDAQSLAQTLP-Q 155

Query: 117 ILAVTGTSGKSSVASFVQQICQ----RSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLA 171
           ++AVTGT+GK++++  + Q+CQ        +S  +G               TT   + + 
Sbjct: 156 VIAVTGTNGKTTISQLMAQLCQFSEVAQLQNSAVMGTAGNGRLDSLVQASHTTGDALAVQ 215

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L  +  +GV  +++EASSHGLDQ RL G+ +    +TNL RDH+DYH   Q Y  AK 
Sbjct: 216 GFLRKMGDEGVDLLALEASSHGLDQQRLQGVPVTVALYTNLSRDHLDYHPDMQDYAQAKA 275

Query: 232 RLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           RLF++    + + A+I ADD ++  +++ A N+G  V     QG FI    +        
Sbjct: 276 RLFDKAYFPQLTHAVINADDEFAPLMIETAQNSGVSVWLYSLQGDFIEKSDLQRNAYFIA 335

Query: 291 VTISVE-----------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            TI                      PL G F V N L A    IA+GI+   +   +++L
Sbjct: 336 KTIEPSLDGVKIEAATSFGPLTLHSPLLGRFNVANLLAAVAGAIALGIEPESIPALVKQL 395

Query: 340 HVVPGRFEFVGTNSRGGR-----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           H   GR + V  + +G +       VDYAHT ++L  +L ++++  SG +  +FGCGGDR
Sbjct: 396 HGASGRMQRVSLDEQGSQPEQGVFIVDYAHTPDALTQVLTSLKSHCSGNLWAIFGCGGDR 455

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAI 449
           D+GKRP+M +  L  AD  ++T DNPRSEDP+ I  ++  G+            +R +AI
Sbjct: 456 DKGKRPLMAQAGLATADKVVLTSDNPRSEDPQMILQDMQQGMSDEQHAKTTVIADRKQAI 515

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             A+E     D++V+AGKGHET   +  G +    D  ++++ L
Sbjct: 516 EYAVEHAAADDIVVIAGKGHETYQEIK-GVRYDFDDRLVLQQAL 558


>gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
 gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
          Length = 520

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 147/479 (30%), Positives = 208/479 (43%), Gaps = 29/479 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A   +  D   FI  AI +GA A++V          A++    P
Sbjct: 30  HLHADTRSLAAGDAFFAYAVDGADNRAFIDAAIERGAAAVLVQPEGFTGKLDASVTHAVP 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L      +     AS  Y    + +LA  +TGT+GK+S + +V       G     +G 
Sbjct: 90  AL-----NELAGTIASAWYRDPSDAMLAVGITGTNGKTSCSQWVAAALSARGTRCAIVGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T           TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGFVGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T +AY  AK RLF     + +                R H       
Sbjct: 205 FTNLTQDHLDYHGTFEAYETAKARLFAWPELRAAVINRDDAAGRRLLASTRGHARTIAYG 264

Query: 269 SVGYQGKFIHLKKVCAIHN------------KQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             G  G         A                     + +  + D      G F V N L
Sbjct: 265 IEGEHGDADAKGAHQADAWLAASNVRATATGTAFHLSTSDWGNADVEVQTLGLFNVSNLL 324

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILK 374
              G+ +A  +     L  L KL  V GR + +G   +       +DYAHT ++LE  L+
Sbjct: 325 AVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLE 384

Query: 375 NIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +R I + R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP  I  +
Sbjct: 385 ALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSEDPLSIIEQ 444

Query: 432 IIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           I  G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 445 IAAGMQDASKARRVEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSDQD 502


>gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
          Length = 507

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 149/483 (30%), Positives = 224/483 (46%), Gaps = 22/483 (4%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +  +  +  V+  S+ ++ G ++ A+ G +  G  F   A   GA A++   A     
Sbjct: 27  PEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAVALLTDPAG---- 82

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQR 139
            +    +  P+LVV + R  L   A+ +YG       ++ VTGT+GK+S +  V+   + 
Sbjct: 83  VALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSYLVESGLRA 142

Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           +G  +  IG   T       D+  TTP    L   L+     GV  V +E SSH L   R
Sbjct: 143 AGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEVSSHALAMGR 202

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G++   G +TN G DH+D+H  +  YF AK +LF+    +    ++  DD   + + K
Sbjct: 203 VGGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG---RCRVEVLNHDDPALRPLHK 259

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALV 317
                     + G          +      Q+ T+             LPG   V NAL+
Sbjct: 260 ---PGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALPGRHNVANALL 316

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  L +A+G+D       +     VPGR E V +     R  VDYAH +N++E +L  +R
Sbjct: 317 AVALLVAVGVDPETAARGVAACGGVPGRLELV-SGDAPVRGVVDYAHKANAIEAVLIALR 375

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII---- 433
            +T GR+I V G GGDRD+GKRP+MG +A   AD+ +VTDDNPR+EDP  IRAE++    
Sbjct: 376 DLTEGRLICVLGAGGDRDRGKRPVMGGVAARGADVVLVTDDNPRTEDPAAIRAEVLAGAY 435

Query: 434 --HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   IE   R  AI  A+ +    DV+ V GKG E    +  GE     D   +  
Sbjct: 436 AAATPARVIEVPGRRAAIEEAVRVAEPGDVVAVLGKGQERGQEIG-GEVLPFDDRVELAA 494

Query: 492 ILG 494
            L 
Sbjct: 495 ALR 497


>gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
 gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
          Length = 508

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 131/508 (25%), Positives = 225/508 (44%), Gaps = 31/508 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++++    LI ++    +   E +I  ++ DSR +   ++F A+ G   +G  FI  
Sbjct: 8   LNDVLFRLNQNLIQKI----IGSCEVEILGLAYDSRCVSFNFVFFALPGLHFNGQKFIES 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPEN--IL 118
           AI +G+  IV ++     D      SN   + VD  N ++F+S FA   Y +  +   I+
Sbjct: 64  AIQRGSNVIVHTNDIDFYD------SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKII 117

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKAL 174
            VTGT GKSSV  ++  + +  G     I        + +      R +TP    +   L
Sbjct: 118 GVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVFLEDGSGTLVKNPYRQSTPESTEIHLVL 177

Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           S + +  V +  +E++SHGLD    RL  I+      TN+  +H+++H T Q Y  AK+ 
Sbjct: 178 SKMVANNVEYAIIESTSHGLDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLN 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF          II  DD +    M           S+  +     + K+       +  
Sbjct: 238 LFYSANFHGGFGIINMDDNHFSVFMN--SINRTYTYSLKNEKADFFISKINEQMGFTEFE 295

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  +     L G F V N + A  +    + +D + ++  L  +  + GR +    
Sbjct: 296 FYHNKIKYAARVNLTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQ-DIN 354

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT  +   +    + +   R+I VFG  G+RD  KR + G+IA + +D
Sbjct: 355 FGQDFSLIVDYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEYSD 414

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + I+ D++PR ED  +I  +I  GI             +R  AI  AI +    D++V  
Sbjct: 415 VIILCDEDPRGEDSMQIIRDIAEGIVTKTLNKDLFFIPDRKCAIEKAINIACSDDLVVTL 474

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHE+  I  + +     +  +I++I+
Sbjct: 475 GKGHESSIIYKD-KSIFWDEQAVIKDII 501


>gi|330469294|ref|YP_004407037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
 gi|328812265|gb|AEB46437.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
          Length = 497

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 155/499 (31%), Positives = 229/499 (45%), Gaps = 22/499 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      +L  +L++ P    +  +  V+  S  +  G ++ A+ G +  G  F+  A A
Sbjct: 1   MTGIRLGDLAARLAVAPPTTVDATVTGVTHASGEVHPGDLYAALPGARRHGAEFVADAAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGT 123
            GA A++  +A +            P LVV + R  L   AS +YG   E   ++ VTGT
Sbjct: 61  AGAVAVLTDAAGA----ELAAGYGLPTLVVADPRAVLGTLASAVYGDPTEKLTVIGVTGT 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+S A  V+   + +G ++  IG   T       D+  TTP    L   L+    +GV
Sbjct: 117 AGKTSTAYLVESGLRAAGHTTGLIGTVETRLGDLVLDSVRTTPEATDLHAMLAAALERGV 176

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T V +E SSH L   R+ G++   G +TN G DH+D+H     YF AK RLF+       
Sbjct: 177 TAVVMEVSSHALAMGRVGGVRFDVGGWTNFGSDHLDFHADADDYFAAKARLFDG------ 230

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  +     +      A     + G        + V      Q+ T+         
Sbjct: 231 RCAHEVLNHDDPALKALFKPATISYSAAGDPSATWWAEDVNGEGYAQRFTLHGPDGLVLD 290

Query: 303 L-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG   V NAL+A  + +A G+D+A     +     VPGR E     + G R  VD
Sbjct: 291 AGVALPGRHNVANALLAVAVLVAAGVDAATAARGVAACGGVPGRLE-SVGVAGGVRGVVD 349

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH ++++  +L  +R ++SGR+I V G GGDRD+GKRP MG  A   AD+ +VTDDNPR
Sbjct: 350 YAHKTDAVVAVLAALRELSSGRLICVIGAGGDRDRGKRPAMGAAAAKGADVVLVTDDNPR 409

Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDP  IRAE++ G          +E   R  AI  A+      DV+ V GKGHE    +
Sbjct: 410 TEDPATIRAEVLAGAYDAGTRTRIVEVAGRRAAIDEAVRQAEPGDVVAVLGKGHERGQEI 469

Query: 476 TNGEKKMSVDCDIIREILG 494
             GE     D   + + L 
Sbjct: 470 A-GEVFPFDDVTELADALR 487


>gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
 gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
          Length = 520

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 149/482 (30%), Positives = 215/482 (44%), Gaps = 35/482 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R + AG  F A      D   FI  AI +GA A++V          A++    P
Sbjct: 30  HLHADTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAAAVLVQPEGFGGTLDASVAHAVP 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILA--VTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L      +     AS  Y    + +L   +TGT+GK+S + +V       G     +G 
Sbjct: 90  AL-----NELAGTIASAWYRDPSDAMLTVGITGTNGKTSCSQWVAAALSALGTRCAIVGT 144

Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T           TTP    L ++L+ L   G   V++E SSH L Q R++G       
Sbjct: 145 LGTGLVGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+DYH T  AY  AK RLF      E  A +   D  +   +  + +   R +
Sbjct: 205 FTNLTQDHLDYHGTFAAYETAKTRLFAW---PELRAAVINRDDAAGRRLLASTHGHARTI 261

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISV---------------EGKDFDFLFPLPGEFQVY 313
           + G +G         A      +T S                +    +      G F V 
Sbjct: 262 AYGIEGGQGDAHAKGAPQADAWLTASNVRATATGTAFHLNTSDWGHAEVEVQTLGLFNVS 321

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEM 371
           N L   G+ +A  +     L  L KL  V GR E +G   +       +DYAHT ++LE 
Sbjct: 322 NLLAVLGVLLAADVPFDAALAELAKLESVNGRMERLGGRLQNDEPLVVIDYAHTPDALEK 381

Query: 372 ILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L+ +R I + R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE+P  I
Sbjct: 382 TLEALRPIATARGGELVCMFGCGGDRDATKRPLMGAIAERLADNVVVTSDNPRSENPLAI 441

Query: 429 RAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
             +I+ G+          +R  AI  AI    ++DV+V+AGKGHE    +  G+K+   D
Sbjct: 442 IEQIVAGMQDASKARRIEDRASAILQAIRGAAREDVIVLAGKGHEATQEIM-GKKRAFSD 500

Query: 486 CD 487
            D
Sbjct: 501 QD 502


>gi|194290818|ref|YP_002006725.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224653|emb|CAQ70664.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 522

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 151/489 (30%), Positives = 216/489 (44%), Gaps = 33/489 (6%)

Query: 33  VSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +S D+R +  G +F A V GN     DG  +I QAIA GA A+V  +      F      
Sbjct: 32  LSGDTRRLSRGDVFFAYVLGNDRLATDGRPYIAQAIAAGAGAVVYEADG----FDWPFGD 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L V    +     A+  +G       +  +TGT+GK+S + ++ ++ Q +G     
Sbjct: 88  AVPHLAVSRLHQLAGPIAAGWHGNPARGLAVTGITGTNGKTSCSQWLARVLQATGTPCAT 147

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G    
Sbjct: 148 IGTLGTGFPDALQATGFTTPDAVQLQASLATLHDAGARAVAMEVSSHGLEQERVAGTHFS 207

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------AYSK 254
               TNL +DH+DYH +   Y  AK RLF     + +                     + 
Sbjct: 208 VAVLTNLTQDHLDYHGSMAEYEAAKARLFRWDGLRTAVINRDDAMGQRLLAADAAAVVAP 267

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V++   +        G +G ++    V A        I       +   P+ G F V N
Sbjct: 268 HVIEYGIDGPAAATVRGPRGAWLRATSVRATATGTAFHIDGSFGHAEMATPMIGAFNVSN 327

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSNSLE 370
            L   G  +A G+     +  L  L  V GR E  G             VDYAHT ++LE
Sbjct: 328 LLAVLGAALANGVAWDAAIAALRALAPVEGRMELFGAAGHDAAQAPLAVVDYAHTPDALE 387

Query: 371 MILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L  +R +    +GR+  VFGCGGDRD  KRP+MG +A  LAD  ++T DNPRSEDP+ 
Sbjct: 388 QTLAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAERLADEVVLTSDNPRSEDPQD 447

Query: 428 IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I   I  G+       +  +R  AI  A+      DV++VAGKGHE    +  G K+   
Sbjct: 448 ILDAIADGMTERARGRQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEIQ-GRKRPFS 506

Query: 485 DCDIIREIL 493
           D + +R  L
Sbjct: 507 DREHVRLAL 515


>gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 572

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 143/499 (28%), Positives = 229/499 (45%), Gaps = 22/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL ++L +        ++  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 66  LGELADRLGVEAAGTG--EVTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAAA 123

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   A + +       +  P+LV ++ R  +   A+ +YG+       L +TGTSGK++
Sbjct: 124 VLTDPAGAER----AAATGLPVLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTT 179

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G  +  IG            +  TTP    L    + +  +GV  V++
Sbjct: 180 TAYLVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 239

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF             
Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGVVNF- 298

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFPL 306
            DD Y + ++  +        + G+     H + V         T +  +G+      PL
Sbjct: 299 -DDEYGRRLLTESGVPVTSFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 357

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       G+D  +  + +  +  VPGR E V          VDYAH +
Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQIAADGIAAVPGVPGRLERVDAGQ-PYLAVVDYAHKT 416

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+++R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 417 DAVESVLRSLRKVTEGRVHIVLGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDPL 476

Query: 427 KIRAEIIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            I A ++ G       E+G+         AI  A+      D ++VAGKGHE    + +G
Sbjct: 477 AILAAMLSGAAEVPVHERGDVLVDADRASAIAAAVARAEPGDTVLVAGKGHEQGQDI-HG 535

Query: 479 EKKMSVDCDIIREILGLIL 497
             +   D  ++   +   L
Sbjct: 536 VVRAFDDRKVLHAAIERSL 554


>gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
          Length = 489

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 136/493 (27%), Positives = 213/493 (43%), Gaps = 27/493 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L+ K   +       FP       IN+V  DSR   +  +FVA  G   D H FI
Sbjct: 1   MKTSELLSK--IKAKKLYGTFPEH-----INKVVVDSRAADSESVFVASHGYTVDSHKFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
           P  + QG   IVV               +   +VV +T +   +F   +           
Sbjct: 54  PNVVRQGCRMIVVDHYIE--------GLDIGQVVVRDTLQAARIFTQHVMDFPSHKLTTY 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK+SVA+ +  + +   ++S  +G      +        +TP  I L + +++ 
Sbjct: 106 GVTGTNGKTSVATMIHHLHRALNINSAYLGTNGFQYNEEVAKGANSTPETITLNQHIAHA 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLF 234
             QG   +++E SSHGL   R DG+ +    FTNL +DH+D+H T + Y   K       
Sbjct: 166 VEQGAQSMAMEMSSHGLALGRTDGVDIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQL 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                ++  A++  DD YSKE++  +            Q   I    +    +    T+ 
Sbjct: 226 GNDFKQQKYAVVNGDDDYSKELIIASPREVITYGI--EQNTDIKATNIKESIHGIAFTLE 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               + +   P  G F +YN L A       G   + + E  + L  V GR E +  N  
Sbjct: 284 TPDGNVEITCPYIGRFNIYNMLAALTALWTQGHALSALAEAAQSLPPVEGRLEVLDRNL- 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DYAHT + +  ++  +     G++I + G  G+RD  K P MG +A   AD  I
Sbjct: 343 PIDLVIDYAHTPDGMNKLIDALEPFKRGKMIFLIGMAGERDLSKTPEMGAVACR-ADYVI 401

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            T DNP ++DP K+   +  G     ++   +R E IR AI M    D++V+A KG E  
Sbjct: 402 FTPDNPANDDPRKLTDALESGATHTNYVSFLDRAEGIRHAIAMSEPGDMVVLASKGREPY 461

Query: 473 HIVTNGEKKMSVD 485
            I+ N  K    D
Sbjct: 462 QIMENYIKVPHRD 474


>gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
 gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
          Length = 486

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 129/513 (25%), Positives = 216/513 (42%), Gaps = 51/513 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG------NKE 54
           M L++L              F ++    ++  ++ DSR ++ G++FVA++G         
Sbjct: 1   MTLEELFA-----------PFGLKAPPLRVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPL 49

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DGH FIP+A+A+GA A+V     SL           P L V + R+ L+  A   +G+  
Sbjct: 50  DGHDFIPEALAKGAIAVVGERELSLP---------VPYLRVGDAREALAHLARHFFGEPD 100

Query: 115 ENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIY 169
             +  L +TG+ GKS+ AS +  + Q     +  +          +       TTP    
Sbjct: 101 RKLALLGITGSKGKSTTASLLHHLLQAGEKPAALLSTVGLRLGEEARPNIGHFTTPEAPQ 160

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +   L     +G+    +E SSH L   R++G+    G F +   D    H        A
Sbjct: 161 VYGFLREAVERGLEAAVLEVSSHALALKRVEGLSYRIGVFVSFYPDD---HLDLHGTAEA 217

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                  L+ +   A++     + K ++ R H            G  +  + +       
Sbjct: 218 YFAAKALLVERSHLAVLNTRLPHLKRLLPRPHLLFGP-------GGEVWGEGLREGEEGL 270

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T+       +   P+ G + + NAL A+   +A G+    VL+ L     VPGR E V
Sbjct: 271 RFTLHTPWGSGEAFLPMLGRYNLDNALAASAAALAYGLSLERVLQGLATFRGVPGRMEVV 330

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  R+ +D+AHT  SLE  LK +R  T GR+++V G  G+RD  +R  +G++A  L
Sbjct: 331 QRK--PFRVVIDFAHTGKSLEEALKTLRATTRGRLLLVVGAAGERDPRRREDIGRVAARL 388

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD    T+++ R+ED + I   +          +    +R EAI  A+    + D +++A
Sbjct: 389 ADKTFFTEEDHRTEDLQAILEALAKAAREEGGLYELIPDRKEAIFCALSEAREGDTVLLA 448

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE---ILGL 495
           GKGHE              +  +  E    LGL
Sbjct: 449 GKGHEHTLERGTLALPW-DEKAVALEGLKALGL 480


>gi|163815239|ref|ZP_02206616.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
 gi|158449434|gb|EDP26429.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
          Length = 540

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 134/541 (24%), Positives = 221/541 (40%), Gaps = 60/541 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+ + L      ELI           +  I ++  DSR +    +FV   G   +G  +I
Sbjct: 1   MRAECLFSGIRYELIKGS-------LDADICDIVDDSRQVSPNAVFVCRRGAVTNGRKYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI----------RSNTPILVVDNTRKFLSLFASRLY 110
             AI++GA  I+++      +                 +  ++V+ + R  +    +  +
Sbjct: 54  GDAISRGAAGIIITDEVWDSEDVYDADSMSGSLGYYPDDFFVVVMHDKRYSIGRLCNNFW 113

Query: 111 GKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSP 167
           G       ++ VTGT GK++V   ++++ +  G  +  IG        +Q     TTP  
Sbjct: 114 GYPSRELTVIGVTGTKGKTTVTYMMKKVLETCGCKTGLIGTIEVDDCSSQVQSVNTTPGV 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L + L  + S G     +E SS G+   R+ G+    G FTN+  DHI      +   
Sbjct: 174 VQLHRILHNMVSNGARCCVMEVSSQGIMLGRVSGVDFDIGIFTNISPDHIGK---NEHKT 230

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             +   ++  +       +   D      +             G  G  +++        
Sbjct: 231 FEEYIRWKSTMFSMCRYAVINMDDVYAPCICNGIQVNGAKKCSGVIGYGMNIWSKELYDK 290

Query: 288 KQQV------------------------------TISVEGKDFDFLFPLPGEFQVYNALV 317
             +                                +  +G        +PG F VYNAL 
Sbjct: 291 ISEHMPVYDIHFSLYIGDQLAMAYNGITPGTECECVMPDGDRVPIHIDMPGLFNVYNALA 350

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                  +G   + V + LE + V  GR E      RG  +Y+DYAH   SLE +LK +R
Sbjct: 351 VIAAGDVLGFPRSTVSKALEDICV-RGRME-CAAVYRGAYVYIDYAHNPVSLENVLKTLR 408

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
           +   G+I  VFGCGG+R + +R  MG ++  +AD+ IVT+DNPR EDPE I  +I  G+ 
Sbjct: 409 SYFGGKIFCVFGCGGNRAKSRRIGMGMVSGKMADLTIVTNDNPRFEDPEAIMDDIEDGLN 468

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                +I   +R +AIR  I      DV+++AGKGHET   V  G +    + ++I +IL
Sbjct: 469 AAGAEYIRIPDRKKAIRYGIVHAVAGDVVLLAGKGHETYQDVM-GHRTHMDERELIGQIL 527

Query: 494 G 494
            
Sbjct: 528 E 528


>gi|238026127|ref|YP_002910358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
 gi|237875321|gb|ACR27654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
          Length = 515

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 141/476 (29%), Positives = 212/476 (44%), Gaps = 30/476 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +F+A      DG      +  A+++GA A++V         +      
Sbjct: 31  LHADTRSLRAGDVFLAY---AVDGADNRPHLANALSRGAAAVLVQPEGYAGIDALDPAVA 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V          AS  YG   + +  + VTGT+GK+S   ++             I
Sbjct: 88  ---LAVPGLDALAGEIASGWYGDPSDAMFVIGVTGTNGKTSCTQWIATALTALRRPCAVI 144

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 145 GTLGSGMPGRLVATGFTTPDAPQLQRSLAQLRDDGAQAVAMEVSSHALHQGRVNGTAFDV 204

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+DYH+T +AY  AK +LF     +   AII  DDA    ++         
Sbjct: 205 AVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRH--AIINRDDAAGGRLLATLAGRVRT 262

Query: 267 VLSV-------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           V              + +   +V A        ++    D D      G F V N L   
Sbjct: 263 VAYGIGARADAPEADRTLIASEVRATATGTAFRLTSSWGDADLEVGTLGLFNVSNLLAVL 322

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
              +   +     L  + +L  V GR + +G           VDYAHT ++LE  L+ +R
Sbjct: 323 ATLLVADLPFDAALAEMRRLESVNGRMQRLGGRIDHDEPLVVVDYAHTPDALEKTLEALR 382

Query: 378 TITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I   R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE P  I  +I  
Sbjct: 383 PIAEARGGALVCMFGCGGDRDTTKRPLMGAIAERLADRVVVTSDNPRSEAPLAIIEQIAS 442

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           G+    G +   +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D
Sbjct: 443 GMHAPDGALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRQFSDQD 497


>gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
 gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
          Length = 975

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 146/469 (31%), Positives = 212/469 (45%), Gaps = 15/469 (3%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           ++DSR +Q G +FVA  G   D   F+ QA+     A   ++    +       ++  IL
Sbjct: 27  TADSRSLQPGEVFVAWPGAARDPRQFVAQAL----AAGAAAALVEAEGAQYFGFTDPRIL 82

Query: 94  VVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            VD  +      A+  YG   E   +LAVTGT+GK+S A +  Q    +G     IG   
Sbjct: 83  AVDGLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLG 142

Query: 152 T-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  Q    TTP P+ L   L+ L  QG    ++EASS GLD+HRL G  + A +FT
Sbjct: 143 AGWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAFT 202

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH    AY  AK  LF     + +   I    A S  +            + 
Sbjct: 203 NLTQDHLDYHGDMAAYARAKRALFVWPGLQHAVLDIDDPYAASVLLADCRSRGQQVQTTA 262

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                    + V      Q++T+           P+ G F + N LV A L    G+D A
Sbjct: 263 LIAKADWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNLLVVAALLHTTGLDDA 322

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVV 387
            +   L  +  VPGR + +G         +DYAHT ++L   L+ +R +     G++  V
Sbjct: 323 AIAAALRTVRAVPGRMQMLGGIGAPL-AVIDYAHTPDALYKALQALRPVTAKRKGKLWCV 381

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGN 444
           FG GGDRD  KRP+M + A   AD  ++T DNPRSE P  I  +++ G+      +   +
Sbjct: 382 FGAGGDRDARKRPLMAQAAEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPAQALLIED 441

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R  AI   +      DV+++AGKGHE    +  G K+   D    R  L
Sbjct: 442 RAAAIAQTLSHAAVHDVVLIAGKGHENTQEIA-GHKQAFSDAFHARMAL 489



 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 129/394 (32%), Gaps = 31/394 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  ++ + +DSR +  G +FVA+ G + D H F+PQA A          A +L      
Sbjct: 516 ADVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAAAA--------GARALLAEQGV 567

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P +   +T +   L A     +    ++AVTG++GK++V   +  I         
Sbjct: 568 AACGLPGIEAPDTLRAFGLLARGWRRQQTLPLIAVTGSNGKTTVTQMLASILAAWQGQDR 627

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++      ++                 A+  L       ++  AS            +  
Sbjct: 628 RLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGMNHPGEIAWLASLA----------EPT 677

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N  R+H ++  + +A  +         LP+   A+  ADDA +   + +A     
Sbjct: 678 VALVNNAQREHQEFMHSVEAVAHENG-SVLAALPQTGVAVFPADDAQTAIWVAQAAGRRV 736

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
              ++    +     +V      +Q      +       +    L G     NAL A   
Sbjct: 737 LRFALREGAEAGVEAEVSGHAFYRQGQLRLQLHTPTGHAEVGLQLLGRHNARNALAATAA 796

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----YVDYAHTSNSLEMILKNIR 377
            +A G     +   LE    V GR           R        Y    +S+   +  + 
Sbjct: 797 ALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADDRTLLLIDDSYNANPDSVRAAIDVLA 856

Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
            +  GR +++ G     GD        +G  A  
Sbjct: 857 EL-PGRSLLLLGDMGEVGDNGPAFHAEVGTYAAQ 889


>gi|229828741|ref|ZP_04454810.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
 gi|229793335|gb|EEP29449.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
          Length = 511

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 130/513 (25%), Positives = 214/513 (41%), Gaps = 32/513 (6%)

Query: 1   MK--LQDLI-----YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK 53
           MK  L D +     +    + +  L     +  +R+I  VS DSR +  G +F+   G  
Sbjct: 1   MKHLLADYLQMLAGHGLLSQTVETLGERLGESLQREITLVSCDSRKVIPGTLFIC-KGAG 59

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
                F+  A  +GA   +    Y           + P + V + R  ++  AS  Y + 
Sbjct: 60  FR-EDFLRMAKERGAAFYLSEKPYE--------GVDLPWIGVSDIRAAMAHSASFCYDRP 110

Query: 114 PE--NILAVTGTSGKSSVASFVQQIC-----QRSGLSSFQIGPTS-TISSFAQDNRLTTP 165
            E   ++ +TGT GKS+ A F++ I       R G  S  I          ++ +R+TTP
Sbjct: 111 WEAFRLVGITGTKGKSTTAFFLKAIFDVYEKSRGGRPSGLISTILTEDGKESRPSRMTTP 170

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
            PI L +  +     G+ +V++E SS  L   R+  ++    +F N+G DHI   +    
Sbjct: 171 EPIELEEHFANAREAGLDYVTMEVSSQALKYDRVLDVQFDVAAFLNIGYDHISPIEHP-T 229

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           + +             +  +    D   + +            S   +   ++   +   
Sbjct: 230 WEDYFASKLRIFSQCRTAVVHLGVDHSEEMLAAAQKARKVITFSETDERADVYGYGMKKQ 289

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +      V G++ +++  +PG F V NAL A  +    GI     ++   K   VPGR
Sbjct: 290 GRETHFKARVLGQEREYILGIPGFFNVSNALAAIAVAEHYGIPYD-CVKEGLKRARVPGR 348

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGK 404
            E   +        +DYAH   S E +    +    GR IV +FG  G +   +R  +G+
Sbjct: 349 MEEYTSADGKIVTIIDYAHNRLSFEKLFAAAKEEFPGRRIVALFGASGGKAINRRRDLGE 408

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
           +A   AD   +T+D+P  EDP +I  EI   I      +    +R EAIRTAI    +  
Sbjct: 409 VAAANADYIYLTEDDPGREDPTRIAEEIASYIKPFGTPYEIIPDRKEAIRTAIHAAKEPT 468

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +L++AGKGHE +    NG +K   D D  R+ L
Sbjct: 469 LLLLAGKGHEVMVRRANGYEKGPSDADCARKYL 501


>gi|332976674|gb|EGK13514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 150/548 (27%), Positives = 243/548 (44%), Gaps = 66/548 (12%)

Query: 9   KDFPELINQLS-IFPMQWRERKINEVSSDSRH----------IQAGWIFVAIVGNKE--- 54
           K  PE    L  I      +   ++   DSR           + A   FV +  + +   
Sbjct: 27  KVLPEQAQTLQQILSQPGIDIAFSKFVLDSRQLDNEVNTAPSVAAPAAFVLLKSHTQPIE 86

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLF-------- 105
               +   A  + A  I+          S        PI+ V N R  L           
Sbjct: 87  KSQQYAQVAAEK-AAFILTEIDPQHLASSTQTAEYACPIIFVANLRDILGSLIQISLLPP 145

Query: 106 --------ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG----LSSFQIGPTSTI 153
                   +S L  + P  ++AVTGT+GK++++  + Q+CQ S      +S  +G     
Sbjct: 146 ASLSSLTHSSDLQQQLP-QVIAVTGTNGKTTISQLIAQLCQFSNVAQLQNSAVMGTAGNG 204

Query: 154 S-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                     TT   + + + L  +  +GV+ +++EASSHGLDQ RL  + +    +TNL
Sbjct: 205 RLDSLVQASHTTGDALAVQRFLRQMHDEGVSILALEASSHGLDQQRLQAVLVTVAVYTNL 264

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            RDH+DYH   + Y  AK RLF+     + + A+I ADD ++  + + A  +G +V    
Sbjct: 265 SRDHLDYHPDMEDYARAKARLFDTAYFPQLTHAVINADDEFASLMAETARRSGAKVWLYS 324

Query: 272 YQGK-----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            + +           +    K+       ++ +           PL G F V N L A  
Sbjct: 325 LRSEQGTINEIANDAYFVANKIEPSLEGVKIEVETSFGPLILHSPLLGRFNVANLLAAVA 384

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEF----------VGTNSRGGRIYVDYAHTSNSLE 370
             +A+GI+   +   + KL    GR +            GT    G   VDYAHT ++L 
Sbjct: 385 GVMALGIELEDLPALVTKLQGASGRMQRVNVNNDAIDDQGTVLNQGVFIVDYAHTPDALT 444

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            +L ++++  SG +  +FGCGGDRD+GKRP+M +  L +AD  ++T DNPRSEDP +I  
Sbjct: 445 QVLTSLKSHCSGNLWAIFGCGGDRDKGKRPLMAQAGLAVADKVVLTSDNPRSEDPAQILE 504

Query: 431 EIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           ++  G+            +R +AI+ A+E    QD++V+AGKGHET   +  G +    D
Sbjct: 505 DMQQGMSDEQHQKTKVIADRKQAIQYAVEHAGPQDIVVIAGKGHETYQEIK-GVRYDFDD 563

Query: 486 CDIIREIL 493
            ++++  L
Sbjct: 564 REVLQHAL 571


>gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
 gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 157/487 (32%), Positives = 246/487 (50%), Gaps = 24/487 (4%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           + +      ++  I  ++  ++  +   IF A+ G    G+ FI  A+A GA  I+   A
Sbjct: 2   ESNNIIEIIKKLNIRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGASLIITDQA 61

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                    I S + ++VV N    +    + LY K P+ ++AVTGT GK+SV ++ QQ+
Sbjct: 62  --------HITSYSNVIVVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQL 113

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRL-----------TTPSPIYLAKALSYLSSQGVTHV 185
           C  +G  +  IG    I++    N+            TT S I     L  L++ G+  V
Sbjct: 114 CMLAGEQAASIGTLGVITTNDHLNKRLNQNKTKPECATTMSYIQTRYLLHQLATNGINFV 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++EASSHGLDQ+RL  IK  A +FT+  RDH+DYH+T   Y +AK++LF+E +     AI
Sbjct: 174 ALEASSHGLDQNRLMDIKFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAI 233

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +      +  +  +     L    Q   I +  V +  N Q+V    +  D+ F   
Sbjct: 234 VNNNINELSIIQSKITDEFGLKLLSVEQQGDIQIINVQSSLNGQKVHFRYKNSDYKFEVL 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   + N L+A  L +  G DSA ++  L  L  + GR E +         +VDYA T
Sbjct: 294 VIGRVHITNILIALLLAVNAGFDSAKLIPLLSNLKPIKGRMEKIQFG--NCYAFVDYALT 351

Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAIVTDDNPRSE 423
            N+L  +L  +RT+   GR+I +FG   +RD   +R  MG +A  L+D+ IVTD +  +E
Sbjct: 352 PNALATMLTELRTLNSKGRLITIFGGSENRDAIARRMQMGIVASKLSDLVIVTDQDSGNE 411

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           DP  IR EI+   P  IE  NR EAI+ AI ++   D+L++AGKGHET  ++  G     
Sbjct: 412 DPAAIRKEILQVAPSAIEIPNRGEAIKYAISIMVDNDILLIAGKGHETRQVLK-GRIINY 470

Query: 484 VDCDIIR 490
            D + ++
Sbjct: 471 NDMEQVK 477


>gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 477

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 129/495 (26%), Positives = 228/495 (46%), Gaps = 28/495 (5%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            F E++  ++     +  E+ I  V+++S+ ++ G+ FVAI GN EDGH +I  AI  GA
Sbjct: 3   KFEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIENGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
             I+ +   + ++           + V++ R  L+  +++L     + +  ++VTG++GK
Sbjct: 63  SLIIHTEDIAYKE-------GISYIKVEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ +  V  +       +  IG   + I         TTP    + K ++    + + ++
Sbjct: 116 TTTSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYL 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S+E+SSHGLDQ R+ G+ +  G FTNL ++H+DYH+T   YF AK      +L  ++   
Sbjct: 176 SLESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAK-----MILFDQAKHT 230

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +   D    +  K  +              +     V          +S E K  +F+  
Sbjct: 231 VANIDDPYGKKAKELYPNTITYGINNENADYRAENVVKKDG-----KVSYEVKGVEFILN 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +++VYN L A  +   +G     V + ++K + V  RFE    N+ G  I +D+AHT
Sbjct: 286 TIADYEVYNTLAATAVVCDMGASLEEVKDAMKKFNGVASRFE-YMENNLGLNIIIDFAHT 344

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
                            +I  V+G  GDR++  R   GK   D    ++VT D+P+ +  
Sbjct: 345 --PFAYECLFKSVPQGHKIYAVYGINGDRNKEFRVSTGKACADNDVFSVVTTDDPKFDTV 402

Query: 426 EKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           E I  +II GI      ++   +R +AI+ AI   NK D + + GKG E    +   EK 
Sbjct: 403 ENISKDIIEGIKSKGGEYVNILDREDAIKYAITHANKGDFIFLLGKGEENFLKLKGNEKT 462

Query: 482 MSVDCDIIREILGLI 496
              + + ++E+L  I
Sbjct: 463 PYSERETLKEVLESI 477


>gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 548

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 142/485 (29%), Positives = 221/485 (45%), Gaps = 22/485 (4%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
                     +  +  V+ DSRH+  G ++ A+ G +  G  F  Q            ++
Sbjct: 46  GAGPADPSGADPAVRGVTLDSRHVLPGDLYAALPGARHHGAQFAGQ----------ARAS 95

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134
            +    S       P LVV + R  L   A+ L+     +  +  VTGT+GK+S    + 
Sbjct: 96  GAAAALSDRPLPGLPTLVVPDPRAVLGPLAAHLHDHPSHHLEVYGVTGTNGKTSTTHLLD 155

Query: 135 QICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
              + +G  +    G       +++  + TTP    L + L+ L  QG T  +VE SSHG
Sbjct: 156 AGLRSAGHRTGMISGIRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSAAVEVSSHG 215

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L  HR+DG +  A  FTNLGRDH+D H  Q++YF AK  LF     + + A++  DDA+ 
Sbjct: 216 LALHRVDGTRFRAAVFTNLGRDHLDLHGDQESYFAAKASLFAP--HRCALAVVNVDDAHG 273

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           + +  +         + G +       +V A  ++    +   G D      L G  QV 
Sbjct: 274 RRLAAQVRVPVTTFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRLHLLGTHQVD 333

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A     A G++   VL  +E L  V GR + +    +     VDYAH   +   +L
Sbjct: 334 NALGAVAALHAGGLNVEDVLRGMEDLTAVSGRLQRI-DEGQPFLALVDYAHNVAAQRRLL 392

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--- 430
             +RT+T GR++VV G  G+RD GKR  +G+ A  L D+ IVTD++P  +DP  +R    
Sbjct: 393 PFLRTLTGGRLVVVLGATGERDPGKRGPLGRTAAQLGDVVIVTDESPHDDDPAALREAVA 452

Query: 431 --EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
                        + +R  AIR A+ + +  DV+VV+G+GH    +V  G  +   D   
Sbjct: 453 GGARGAASAQVHVEADRDRAIRLAVSLADPGDVVVVSGRGH-DGQLVAGGRTRAFDDGAR 511

Query: 489 IREIL 493
           +R  L
Sbjct: 512 LRAAL 516


>gi|324998161|ref|ZP_08119273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudonocardia sp. P1]
          Length = 534

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 152/488 (31%), Positives = 222/488 (45%), Gaps = 26/488 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +   +  +  ++ G +F A+ G +  G  F  QAIA GA A++  +  +  D      
Sbjct: 49  HVVTGATLRAGSVRPGDLFAALPGARAHGADFAAQAIAGGAAAVLTDADGA--DRPEIRH 106

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           S  P+LV    R+ L   ++ +YG+      +L VTGTSGK++V   ++     +G S+ 
Sbjct: 107 SRLPVLVHPAPREVLGPVSAAIYGEPTARLRVLGVTGTSGKTTVGHLLEAGLTAAGRSTG 166

Query: 146 QIGPTSTI------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            +G   T          A  +  TTP    L    + +   GVT V++E SSH L   R+
Sbjct: 167 LLGTVRTRVQVPGEEPRALPSAFTTPEAPDLQALFAVMVEAGVTDVAMEVSSHALALGRV 226

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEV 256
            G +   G+FTNL +DH+D+H T   YF AK RLF         A       DD + +++
Sbjct: 227 GGSRFAVGAFTNLSQDHLDFHPTMTDYFEAKARLFGGGGAGVEAARHGVVCIDDEWGRQL 286

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFPLPGEFQVYN 314
             R  +A               ++ + A  +  Q   +V            LPG + V N
Sbjct: 287 ASRRPDAVTVGSDPAGPHATWTVRDLAAHPDGTQTFTAVGPGGLAQAVTLALPGRYNVAN 346

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           ALVA     A GI   +  +   +L V PGR + V          VDYAH   ++  +L 
Sbjct: 347 ALVALACLDADGIPPEVAAQGFARLSV-PGRMQRVDAGQ-PWLAVVDYAHKPAAVAALLD 404

Query: 375 NIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +R       R+I V GCGGDRD GKRP+MG  A   +D  +VTDDNPR E+P  IR  +
Sbjct: 405 ALRAQIHPHARVITVLGCGGDRDTGKRPLMGAAAAIRSDTLVVTDDNPRGEEPATIRRAM 464

Query: 433 IHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           + G          IE G+R  AI  A+      D +V+AGKGHET   V +G K    D 
Sbjct: 465 LEGAMHEPARGDVIEIGDRRSAIVYAVRSARPGDAVVIAGKGHETGQEV-HGVKYPFDDA 523

Query: 487 DIIREILG 494
           D +   + 
Sbjct: 524 DELVNAIR 531


>gi|227833496|ref|YP_002835203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454512|gb|ACP33265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 500

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 151/493 (30%), Positives = 229/493 (46%), Gaps = 28/493 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +      ++    +S  +  G +F A+ G +  G  F        A AI+  +       
Sbjct: 2   IGDASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADTE---AAAILTDAEGKRILN 58

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
            A      P+LVV++ R  L   ++ +Y    +   IL VTGTSGK++ +  ++     +
Sbjct: 59  DAG--EKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKTTTSYLLEAGLLHA 116

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G S   IG T T  +       LTTP    L +  + + S+GVTHV +E SSH L   R+
Sbjct: 117 GYSVGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRV 176

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            G +   G FTNL +DH+D+H T + YF AK  LF+     +   I   DD + + + +R
Sbjct: 177 QGTRFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADRSVI-CVDDEWGRRMAQR 235

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-------EGKDFDFLFPLPGEFQV 312
           A       +S   QG    +                           F+F  P+PG F +
Sbjct: 236 AAARPVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNI 295

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA +A G+  +IGI+  + LE +EK+ V PGR E V          VDYAH   ++  +
Sbjct: 296 ANAALATGMAASIGIEPQVFLEGVEKVAV-PGRMERVDRGQ-DFVAVVDYAHKPAAIAAV 353

Query: 373 LKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L+ +R     ++GRI +V G GGDRD  KRP+MG  A   AD+ +VTDDNPR+EDP  IR
Sbjct: 354 LETLRTQLEGSAGRIGIVVGAGGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIR 413

Query: 430 AEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           A ++ G           E G+R +AI   +      D ++V GKGHE   ++ +      
Sbjct: 414 AAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKGHEVGQLIGD-TVHHF 472

Query: 484 VDCDIIREILGLI 496
            D + +   L  +
Sbjct: 473 DDREEMARALEAV 485


>gi|113869231|ref|YP_727720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
 gi|113528007|emb|CAJ94352.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
          Length = 520

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 149/487 (30%), Positives = 215/487 (44%), Gaps = 31/487 (6%)

Query: 33  VSSDSRHIQAGWIFVAIV-GNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ D+R +  G +F A V GN     DG L+I QAIA GA AIV  +      F      
Sbjct: 32  LTGDTRRLARGDVFFAYVLGNARLATDGRLYIAQAIAAGAGAIVYEADG----FDWPFSD 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L V +  +     A+  +G       +  +TGT+GK+S + ++ ++ Q +G     
Sbjct: 88  VVPHLAVSHLHQLAGPIAAGWHGNPVRGLAVTGITGTNGKTSCSQWLARVLQAAGTPCAT 147

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G    
Sbjct: 148 IGTLGTGFPGALQATGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVAGTHFS 207

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------AYSK 254
               TNL +DH+DYH +   Y  AK  LF     + +                     + 
Sbjct: 208 VAVLTNLTQDHLDYHGSMAEYEAAKESLFRWDGLRTAVVNRDDAMGQRLLAADAAAIGAP 267

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V++   +          +G+++    V A        I       +   P+ G F V N
Sbjct: 268 HVIEYGIDGPGAATVRRPRGEWLRATNVRATPTGTAFHIDGSFGSAEMATPMIGAFNVSN 327

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMI 372
            L   G  +A G+     +  L  L  V GR E  G           VDYAHT ++L   
Sbjct: 328 LLAVLGAALANGVAWDAAIAALRALTPVEGRMELFGAAGGPDAPLAVVDYAHTPDALAQT 387

Query: 373 LKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L  +R +    +GR+  VFGCGGDRD  KRP+MG +A   AD  I+T DNPRSEDP+ I 
Sbjct: 388 LAALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGAVAEREADEVILTSDNPRSEDPQDIL 447

Query: 430 AEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
             I  G+       +  +R  AI  A+      DV++VAGKGHE    +  G K+   D 
Sbjct: 448 DAIADGMAVRARARQIEDRAAAILYAVRHAAPADVVLVAGKGHEATQEIQ-GRKRPFSDR 506

Query: 487 DIIREIL 493
           + +R  L
Sbjct: 507 EHVRLAL 513


>gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
 gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
          Length = 508

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 131/508 (25%), Positives = 225/508 (44%), Gaps = 31/508 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++++    LI ++    +   E +I  ++ DSR +   ++F A+ G   +G  FI  
Sbjct: 8   LNDVLFRLNQNLIQKI----IGSCEVEILGLAYDSRCVSFNFVFFALPGLYFNGQKFIES 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPEN--IL 118
           AI +G+  IV ++     D      SN   + VD  N ++F+S FA   Y +  +   I+
Sbjct: 64  AIQRGSNVIVHTNDIDFYD------SNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKII 117

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKAL 174
            VTGT GKSSV  ++  + +  G     I        + +      R +TP    +   L
Sbjct: 118 GVTGTDGKSSVCFYIYTLLKSMGAKVGFISTVFLEDGSGALVKNPYRQSTPESTEIHLVL 177

Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           S + +  V +  +E++SHGLD    RL  I+      TN+  +H+++H T Q Y  AK+ 
Sbjct: 178 SKMVANNVEYAIIESTSHGLDDRTSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLN 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF          II  DD +    M           S+  +     + K+       +  
Sbjct: 238 LFYSANSHGGFGIINMDDNHFSVFMN--SINRTYTYSLKNEKADFFISKINEQMGFTEFE 295

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  +     L G F V N + A  +    + +D + ++  L  +  + GR +    
Sbjct: 296 FYHNKTKYAARVNLTGSFNVENVMAALIVVSQIMNVDISKLICKLINIESLYGRMQ-DIN 354

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +   + VDYAHT  +   +    + +   R+I VFG  G+RD  KR + G+IA + +D
Sbjct: 355 FGQDFSLIVDYAHTPGAFLKMFPIFKRLAKKRLISVFGSAGERDILKRRLQGEIADEYSD 414

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + I+ D++PR ED  +I  +I  GI             +R  AI  AI +    D++V  
Sbjct: 415 VIILCDEDPRGEDSMQIIRDIAEGIVTKTLNRDLFFIPDRKCAIEKAINIACSDDLVVTL 474

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
           GKGHE+  I  + +     +  +I++I+
Sbjct: 475 GKGHESSIIYKD-KSIFWDEQAVIKDII 501


>gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate
           ligase [Streptomyces venezuelae ATCC 10712]
          Length = 565

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 147/497 (29%), Positives = 231/497 (46%), Gaps = 23/497 (4%)

Query: 11  FPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L  QL +  P   R  +I+ ++ DSR ++ G ++ A+ G +  G  F+ QA   GA 
Sbjct: 56  LGDLAAQLGVDVPDAPRPTEISGITHDSRAVRPGDVYAALPGARAHGADFVAQAAGLGAA 115

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKS 127
           AI+     + +       +  P+LVV+N R  +   A+ +YG+   +   + +TGTSGK+
Sbjct: 116 AILTDPTGAER----AAATGLPVLVVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKT 171

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A  V+   + +G  +  +G            +  TTP    L    + +  +GV  V+
Sbjct: 172 TTAYLVEGGLRGTGHHTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVA 231

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+DG       F NL  +H+++H   + YF AK  LF     +     +
Sbjct: 232 MEVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSDMEDYFQAKAGLFTPERSRLGVVNL 291

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGKDFDFLFP 305
             DDAY + ++  A        + G        + +    +    T +   G+      P
Sbjct: 292 --DDAYGRRLVGEATVPVLTFSAEGRADADWRAEDLVLGSHDSTFTAVGPGGERISATAP 349

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG F V N L A     A G+D     E +  +  VPGR E V    +     VDYAH 
Sbjct: 350 LPGPFNVANTLAAIATLAAAGLDPKAAAEGVAAVPGVPGRLERV-EAGQPYLAVVDYAHK 408

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP
Sbjct: 409 TDAVESVLRSLREVTEGRLHVVIGCGGDRDTTKRGPMGAAAARLADTAVLTSDNPRSEDP 468

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVT 476
             I   ++ G      +  R E +           A+      D ++VAGKGHE    + 
Sbjct: 469 LTILTAMLAGAAEVPAEE-RGEVLVLADRAAAIAAAVARARPGDTVLVAGKGHEQGQEIA 527

Query: 477 NGEKKMSVDCDIIREIL 493
            G  +   D  ++RE +
Sbjct: 528 -GVVRPFDDRQVLREAI 543


>gi|146329007|ref|YP_001209875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
 gi|146232477|gb|ABQ13455.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
          Length = 482

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 144/502 (28%), Positives = 224/502 (44%), Gaps = 38/502 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF----IPQAI 64
           K   EL+  L +      ++ I+ +S DSR +    +++A  G +     F    I    
Sbjct: 2   KTTHELLTALGLSTAAVDDKPISALSLDSRVLNEQMLWLATRGTQYHALDFYTPEIN--- 58

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
                AI     Y      A        + V+   + +S  A   Y  HP   L +TG +
Sbjct: 59  ---CAAIFYEPPYQNPPPHA--------ITVERLSEKVSAIADLFYD-HPAQKLWITGVT 106

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVT 183
           G    +S V  I Q +G  +  +G     +    Q    TTP  I   + L++  +QG  
Sbjct: 107 GTDGKSSLVHFIAQATG--AAMLGTIGYGNLNALQPASHTTPDAITTQQQLAHFVAQGNQ 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V++E SSH L QHR+  + +    FTNL RDH+DYH   + YF AK +LF   +     
Sbjct: 165 AVAMEISSHALAQHRVAAVAVDVAVFTNLSRDHLDYHADMEDYFLAKAQLFAFPIKH--- 221

Query: 244 AIIYADDAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           A+I  DD + + ++                +          +     C   N    T+++
Sbjct: 222 AVINIDDPHGRRLISEHRINSSACIWAVSAKGAHNAAAHHNVCAHDYCLHQNGVTFTLAI 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + +       L   F + N L  A    A G   A + E L +LH V GR E +  +++ 
Sbjct: 282 DDETIAVETHLLARFNLDNVLNVAACLAAQGFSLAAIAEKLNQLHGVIGRVEPISLSNQ- 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               VDYAHT+ ++E +L  IR   SG++ ++FGCGG+RD+GKR +M + A   AD  IV
Sbjct: 341 ALAIVDYAHTAGAIESVLTGIRPHISGKLWLIFGCGGNRDRGKRALMAQAAERFADAVIV 400

Query: 416 TDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           TDDNPR+EDP  I A+++ G            R +AI  A+  L+  D +++ GKGHE  
Sbjct: 401 TDDNPRTEDPAAIIADVMQGFEYPEKIHVIQPREQAIHYALAQLHAGDAVLITGKGHEDY 460

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+    K    D  +I+  + 
Sbjct: 461 QIIGT-TKYPFSDQAVIKAWIN 481


>gi|296269381|ref|YP_003652013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
 gi|296092168|gb|ADG88120.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
          Length = 524

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 157/473 (33%), Positives = 224/473 (47%), Gaps = 22/473 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +Q G ++VA+ G+   G  F  +A A GA AI+  +A         + + 
Sbjct: 36  ITGISIDSRRVQRGDLYVALPGSTAHGADFAAEASAAGAVAILTDAAG----RERAVATG 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LVV + R  L   A+ +YG       I+ VTGTSGKS+     +   + +G  +  I
Sbjct: 92  LPVLVVPDPRAVLGRVAAWVYGNPTADLTIIGVTGTSGKSTTTFLTEAGLRAAGHRTGLI 151

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G             RLTTP    L    + +  QGVT  ++E SSH L   R+  I    
Sbjct: 152 GGVEIRVGDLRFPARLTTPEASELQALFALMREQGVTAAAMEVSSHALALGRVAEIIYDV 211

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
             FTNL +DH+D+H+    YF AK RLF     +        DD Y +E+ +RA      
Sbjct: 212 AIFTNLSQDHLDFHRDLDDYFAAKARLFTPDHSRLGVVN--IDDRYGRELAERAKIPITT 269

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAI 325
               G       +  V    +     +   G  + D    LPG F V NAL A    +  
Sbjct: 270 FSPSGDADADWRVADVRLGADGSVFRVVGPGGVETDVSVALPGAFNVANALAALVALVEA 329

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GR 383
           G+     +  +     VPGR E V       +++VDYAH   ++E +L+++R +     R
Sbjct: 330 GVPVPAAVAGIGMTTCVPGRMERVP-GPGDIQVFVDYAHKPAAVESVLRSLRAVMGSGRR 388

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           +++V GCGGDRD+GKRP+MG+ A  LAD AI T+DNPRSEDP  I A ++ G        
Sbjct: 389 LVIVVGCGGDRDRGKRPLMGEAAARLADAAIFTNDNPRSEDPLAILAAMLSGALRVPAAE 448

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
               I + +R  AI  AI      DV++VAGKGHE    V  G      D ++
Sbjct: 449 RAHVIVEPDRAAAIDLAISTARSGDVVLVAGKGHEQGQYVG-GRVIPFDDREV 500


>gi|297626715|ref|YP_003688478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922480|emb|CBL57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 529

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 144/486 (29%), Positives = 230/486 (47%), Gaps = 26/486 (5%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P      +I +V  DSR +  G ++V + G +  G        AQ A    V+     +
Sbjct: 35  LPAGADHLQIVDVYLDSRSVLPGSLYVGLPGTRTHG----ANFAAQAAALGAVALLTDAE 90

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
                  +  PI+V +  R  ++  A+R++G    +  ++ +TGT+GK++ A  ++    
Sbjct: 91  GAELAADAGLPIVVAEQPRVAMAHMAARVFGDPTRDLLMIGITGTNGKTTCAFLIEGALI 150

Query: 139 RSGLSSFQIGPTSTISSFAQDNR----LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +G     IG                 +TTP    L    + +   G   + +E SSH L
Sbjct: 151 AAGHRVGTIGTIGFRLEGEPLPSSRSTITTPESCDLQALFAVMREGGADAIVMEVSSHAL 210

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              R++G+     +FTNLGRDH+D+H+TQ+AYF AK +LF       S A+I  DD + +
Sbjct: 211 ALDRVEGVHFDVAAFTNLGRDHLDFHKTQEAYFEAKAKLFRP--TMTSRAVINGDDPWGR 268

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQ 311
            +++RA  AG   +           + + +    +    + ++  G+   F   LPG++ 
Sbjct: 269 ILVERADAAGAPHVVTTGFDPERDYRVLDSTPTIEGGEHIELATPGEAMAFDIALPGQYN 328

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA     +    G++    +  LEK  V PGR + V       R+YVD+AHT  ++E 
Sbjct: 329 VANAATTIAVLAQAGVNLDRAVPGLEKALV-PGRMQRVDLGPDSPRVYVDFAHTPQAVES 387

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L  +     GR +VV G GGDRD+ KR  MG  A   AD+ +VTDDNPR+EDP  IRAE
Sbjct: 388 ALSAL----PGRTLVVLGAGGDRDEAKRGPMGVAAARHADVVVVTDDNPRTEDPATIRAE 443

Query: 432 IIHG---IPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++ G   +P        +R  AI  A+ M +  D + + GKGHET   + NG      D 
Sbjct: 444 VLAGARQVPDTEVIDGLDRRHAIGLALGMAHAGDAVAILGKGHETTQEI-NGVLHPFNDV 502

Query: 487 DIIREI 492
            ++++ 
Sbjct: 503 TVVQQA 508


>gi|126435850|ref|YP_001071541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. JLS]
 gi|126235650|gb|ABN99050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mycobacterium sp. JLS]
          Length = 508

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 151/508 (29%), Positives = 221/508 (43%), Gaps = 19/508 (3%)

Query: 1   MKLQDL-----IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MKL+             E +  +        + ++  V+   +    G +F A+ G+   
Sbjct: 3   MKLRPSHPVGHALGALAEQVQAVPAPGFPVPDIRVTGVTLRGQDALPGDLFAALPGSSAH 62

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F+  A+A GA A++  +A ++   +  +    P+LV  + R  L   AS +YG   +
Sbjct: 63  GARFVADAVAAGAVAVLTDAAGAVMLGADPV---VPVLVHPDPRAVLGAVASTVYGHPSQ 119

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAK 172
              ++ VTGTSGK++    V+   + +G  +  IG          Q + LTTP    L  
Sbjct: 120 HLRVVGVTGTSGKTTTTYLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQA 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L+ +  QGV  V +E SSH L   R+DG+   AG FTNL RDH+D+H T + YF+AK  
Sbjct: 180 LLAVMVEQGVDTVVMEVSSHALTLGRVDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAG 239

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF+      +   +   D  +   M         V + G    +            Q+  
Sbjct: 240 LFDPQSRTRAELAVVCVDDDAGRAMAIRAGRAVTVSASGRPADWRAEDVRAVEAGAQEFV 299

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                     L             + A   +     S        +   VPGR E V   
Sbjct: 300 AVDPAGVHHGLRIALPGHYNVANCLLAAALLDAVDVSPEQAAPGLRTATVPGRLEAVDRG 359

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                  VDYAH   +L  +L+ +R   +GRI VVFG GG+RD GKR  MG++A +LAD+
Sbjct: 360 Q-DFLALVDYAHKPGALRAVLETLRGQGTGRIAVVFGAGGNRDAGKREPMGRVAAELADL 418

Query: 413 AIVTDDNPRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +VTDDNPR EDP  IR      A    G    +E G+R EAI  A+      DV++VAG
Sbjct: 419 VVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEVGDRREAIAHAVRWARSGDVVLVAG 478

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILG 494
           KGHET      G      D   + E+L 
Sbjct: 479 KGHETGQT-AAGRTHPFDDRVELAELLE 505


>gi|225021921|ref|ZP_03711113.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945308|gb|EEG26517.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 497

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 211/480 (43%), Gaps = 15/480 (3%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +  +  I EV  +S  + AG +F A+ G +  G      A    A AI+   A      
Sbjct: 21  AEQAQVPITEVGLNSAELPAGALFAAVPGTRVHGA---RFAADTAAAAILTDEAG--WGL 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
            +      P+LVVD+ R  L + A+ +YG       ++ +TGTSGK++ +  ++     +
Sbjct: 76  LSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSGKTTTSYMLEAGLLAA 135

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G     IG T T  +       LTTP    L      + ++GVTHV +E SSH L   R+
Sbjct: 136 GYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHVVMEVSSHALMLGRV 195

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMK 258
            G+K     FTNL +DH+D+H T   YF+AK   F    P  +  A++  DD + +++  
Sbjct: 196 LGVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARAVVCVDDEWGEKMAS 255

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +    + + G  G +            Q+  ++                        
Sbjct: 256 VFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFQLAAPSGSVVAATVPLPGRFNVANAAL 315

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A             L        VPGR E V          VDYAH   +++ +L  +R 
Sbjct: 316 ALALADTVGVDMTALLPGLAGVGVPGRMEVVDCGQ-DFLAVVDYAHKPAAIKAVLATVRG 374

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
             +GRI +V G GGDRD  KRPIMG  A   AD  +VTDDNPR+EDP  IRA+++ G   
Sbjct: 375 QITGRIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNEDPAAIRAQVLAGTAA 434

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                +E G+R  AIR  +      D +++AGKGHE   ++ +G      D + +R  L 
Sbjct: 435 GSAEVVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI-DGVTHHFDDREELRAALE 493


>gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
          Length = 561

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 139/497 (27%), Positives = 227/497 (45%), Gaps = 22/497 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  +L +      E  +  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 62  LGELAARLGVSDPAADEVTVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGAAA 121

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   A + +       +  P+LV +N R  +   A+ +YG   E    + +TGTSGK++
Sbjct: 122 VLTDPAGADR----AAATGLPVLVTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTT 177

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               ++   + +G ++  +G   T        +  TTP    L    + +  +GV  V++
Sbjct: 178 TVYLMEGGLRAAGRATGLVGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAM 237

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +     + 
Sbjct: 238 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPARSRRGVVNL- 296

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306
            DDAY + +   A        + G+       + V        +T+   G        PL
Sbjct: 297 -DDAYGRRLAAEATVPVTTFSAEGHPDADWRAEDVEVGPLGSTLTLVGPGGVRVSARAPL 355

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N + A       G+D     + +  +  VPGR E V    +     VDYAH +
Sbjct: 356 PGPFNVANTVAAVVALATAGVDPQTAADGVAAVPGVPGRLERV-DEGQPYLAVVDYAHKT 414

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++++ +L+++R +T GR+ +V GCGGDRD+ KR  MG  A  LAD A++T DNPRSEDP 
Sbjct: 415 DAVDSVLRSLRKVTEGRLHIVLGCGGDRDETKRGPMGAAAARLADTAVLTSDNPRSEDPL 474

Query: 427 KIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAGKGHETVHIVTN 477
            I A ++ G         R + +           A+      D +++AGKGHE    +  
Sbjct: 475 AILAAMLAGAAEV-PAHERGQVLVDADRAAAVAAAVARAEPGDTVLIAGKGHEQGQDIA- 532

Query: 478 GEKKMSVDCDIIREILG 494
           G  +   D  ++RE + 
Sbjct: 533 GVVRPFDDRQVLREAIR 549


>gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus
           sativus]
          Length = 871

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 127/516 (24%), Positives = 235/516 (45%), Gaps = 44/516 (8%)

Query: 11  FPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF--IPQAIA 65
             EL+++  + P+      + +I  +  DSR + AG +FV       DG     + +A  
Sbjct: 343 LAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCC-----DGGDDSVLSEADK 397

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGT 123
           +GA A+V S    ++D          +++V++T   L+  AS  Y    +++  + VTGT
Sbjct: 398 RGAVAVVASKEIDIEDTLGCRA----LVIVEDTEAVLAALASSFYRHPSKDMAVIGVTGT 453

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           +GK++    ++ + +  G+ +      S         D+  T+P  + +   ++ +   G
Sbjct: 454 NGKTTTTYLIKSLYEAMGVRTGMFSSVSCYVHGDNKMDSTTTSPDAVLVQSMMAKMLHNG 513

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +EAS   L   + D +      FTNL R+   +  T + Y +A+ +LF  ++  E
Sbjct: 514 TEALVMEASPQELASGKCDEVDFDIAVFTNLAREDSGFRGTDEEYRDAEAKLFARMVDPE 573

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               +   D  +     +  N        ++      +H  K      + QV ++     
Sbjct: 574 RHRKVVNIDDPNAAFFVQQGNPDVPVVTFAMENTKADVHPLKFELSLFETQVLLNTPQGI 633

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    L G   +YN L A  + IA+G     ++  +E++  VPGR E +    +   + 
Sbjct: 634 LEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELI-DEEQAFGVI 692

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VD+A+T + L  +L ++R +   RII V GC G+ ++GKRP+M KIA + +D+ ++T DN
Sbjct: 693 VDHANTPDGLSRLLDSVRELKPRRIITVIGCAGETERGKRPVMTKIATEKSDVTMLTSDN 752

Query: 420 PRSEDPEKIRAEIIHGIPGFIE------KGN----------------RIEAIRTAIEMLN 457
           P +EDP  I  +++ GI   ++      + +                R  A+R A+ M  
Sbjct: 753 PGNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRLFLHDIRRVAVRCAVAMGE 812

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 813 EGDMVVVAGKGHEAYQ-LEGDKKEFYDDREECREAL 847


>gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 506

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 124/485 (25%), Positives = 226/485 (46%), Gaps = 29/485 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ V+ DSR +Q    FV I G K DGH F+  AI  GA A++   +  + + +   
Sbjct: 21  KRVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDAIRNGA-AVLAGESAEVLEKAGRK 79

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +   ++V++ R FL+  +   Y +  EN   + VTGT+GK++V ++V+ +    G  +
Sbjct: 80  YPDRTFILVEDARAFLAQLSILFYKRAHENLTTIGVTGTNGKTTVTAYVKSLLTLLGTPT 139

Query: 145 FQIGPTSTIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             IG T  IS       + +  TTP    L         +G     +E SS    Q R++
Sbjct: 140 GSIGTTGIISSTGTINLKKSTPTTPEASDLHYIFDQFKERGDEAAVMEVSSVSTVQKRVE 199

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-KEVMKR 259
           GI+      TNL  +H+++H+T + Y  AK++LF++       A++  DD+   K+++K 
Sbjct: 200 GIEFDIAIHTNLSPEHLEFHKTFENYKEAKLKLFKQ----AKKAVVNIDDSGMAKDILKI 255

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                            +    +  I ++    +  + + +    P+ G++ V N L A 
Sbjct: 256 HSGDVLTYSLDKRSDADVKASNLRTIGHETFFELKFQKESYIVRAPVIGDYNVANILAAV 315

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +  G     +L  L  +    GRFE + T     +I +DYAHT  +L+ +L+ ++ +
Sbjct: 316 CTALHSGYSIHQILLALTSIEGPEGRFELL-TEYGNRKIMLDYAHTPAALDNLLREVKKL 374

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436
              R+IV+    G RD+ K P+M +     AD  +V+ D+P   DP++I + ++ G    
Sbjct: 375 EYNRLIVLITGIGLRDKSKMPLMAETVEGRADEIVVSVDHPDFNDPDEIISNVLAGFSNP 434

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVA-----GKGHETVHIVTNGEKKMSVDCDII 489
                  +  R EA+ +A+ + N+ D++++      G       IV  G++    D D+I
Sbjct: 435 SADNIYTERTRAEAVLSALALSNENDLVLLTSGCING-----AQIVE-GKEIPHSDKDLI 488

Query: 490 REILG 494
           +    
Sbjct: 489 KSYFN 493


>gi|305680919|ref|ZP_07403726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659124|gb|EFM48624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 497

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 211/480 (43%), Gaps = 15/480 (3%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +  +  I EV  +S  + AG +F A+ G +  G      A    A AI+   A      
Sbjct: 21  AEQAQVPITEVGLNSAELPAGALFAAVPGTRVHGA---RFAADTAAAAILTDEAG--WGL 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
            +      P+LVVD+ R  L + A+ +YG       ++ +TGTSGK++ +  ++     +
Sbjct: 76  LSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSGKTTTSYMLEAGLLAA 135

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G     IG T T  +       LTTP    L      + ++GVTHV +E SSH L   R+
Sbjct: 136 GYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTHVVMEVSSHALMLGRV 195

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMK 258
            G+K     FTNL +DH+D+H T   YF+AK   F    P  +  A++  DD + +++  
Sbjct: 196 LGVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFRPGSPTRAARAVVCVDDEWGEKMAS 255

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +    + + G  G +            Q+  ++                        
Sbjct: 256 VFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFRLAAPSGAVVAATVPLPGRFNVANAAL 315

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A             L        VPGR E V          VDYAH   +++ +L  +R 
Sbjct: 316 ALALADTVGVDMTALLPGLAGVGVPGRMEVVDCGQ-DFLAVVDYAHKPAAIKAVLATVRG 374

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
             +GRI +V G GGDRD  KRPIMG  A   AD  +VTDDNPR+EDP  IRA+++ G   
Sbjct: 375 QITGRIGLVVGAGGDRDHSKRPIMGAEAAAGADYVVVTDDNPRNEDPAAIRAQVLAGTAA 434

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                +E G+R  AIR  +      D +++AGKGHE   ++ +G      D + +R  L 
Sbjct: 435 GSAEVVEIGDRRAAIRQVVAWAKPGDAVIIAGKGHEVGQLI-DGVMHHFDDREELRAALE 493


>gi|332976289|gb|EGK13149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desmospora sp. 8437]
          Length = 399

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 126/394 (31%), Positives = 192/394 (48%), Gaps = 17/394 (4%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLA 171
           H  N++AVTGT+GK++V   ++ I +  G  +  IG  +          + TTP  + L 
Sbjct: 6   HDLNLIAVTGTNGKTTVTHLIRNILRECGHETGLIGTINMQIGDETYPVKNTTPDAVELQ 65

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +    +  +G TH  +EASSH L   R  G +     FTNL +DH+DYH T   Y  AK 
Sbjct: 66  RGFRKMVDRGCTHAVIEASSHALHLGRTRGCRFKTAVFTNLTQDHLDYHGTMDHYRAAKG 125

Query: 232 -------RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                   ++ +    +  A++  DD   +  M+                  +  + +  
Sbjct: 126 ILFGQLGNVYTDKAEDQPLAVLNIDDEAGEIYMETTSAQVITYGV--EHPADVRGENIRF 183

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                + T++      D    L G+F VYNAL AA + +  GI    + E L ++  VPG
Sbjct: 184 YSGGTRFTLNTYRGSVDIDMKLMGKFSVYNALAAAAVALGEGISLEKIGEVLSRVKGVPG 243

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V        + VDYAHT +SLE +L  +R  T G II V GCGGDRD+GKRP M +
Sbjct: 244 RLEAVDAGQ-PFPVLVDYAHTPDSLENVLTTVRGFTKGNIICVVGCGGDRDRGKRPQMAR 302

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQ 459
           IA + ++  ++T DNPR+EDP +I  +++ G+            +R EAI  A+      
Sbjct: 303 IAAENSNRVVITSDNPRTEDPRRIIDDMLAGVKDFPEDRIQVIPDRAEAIGYAVRHAQAD 362

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           DV+++AGKGHET   + NG +    D ++ R  +
Sbjct: 363 DVVLIAGKGHETYQEI-NGVRHDFDDREVARTAI 395


>gi|258546147|ref|ZP_05706381.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518572|gb|EEV87431.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 483

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 141/488 (28%), Positives = 211/488 (43%), Gaps = 24/488 (4%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +L + L        +R I  +++DSR +    +++A  G       F          AI
Sbjct: 5   KKLNDLLKGLTAATADRDIAAIATDSRALTPQTLWLAARGISHHALDFYNP--ELHPAAI 62

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
                Y+     A        +  +     L   A+R Y  HP   L + G +G    +S
Sbjct: 63  AYEPPYANPPADA--------IACEQLGAHLGEIAARFYD-HPARALKLIGVTGTDGKSS 113

Query: 132 FVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            V  + Q +G +   +G          +    TTP P+ + + L+     G+  V++E S
Sbjct: 114 LVHFLAQATGGA--MLGTIGYGKLDALEPASHTTPDPLRVQQYLARFRDAGIETVAMEVS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP-----AI 245
           SH L Q R+  ++   G FTNL RDH+DYH+  + YF AK  LF   LP           
Sbjct: 172 SHALAQGRVAAVEYHIGVFTNLSRDHLDYHRDMEDYFLAKASLFARPLPVAVINIDDAHG 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D        R      +  +       +  + +    +    T+  E +       
Sbjct: 232 RRLLDENRVHPKTRVIAVSSQNHAHPRAALTLRARDIVLSPDGIAYTLETEAEQVAIQSG 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L   F V N L  A   +A+G   A +   L  LH VPGR E +G  + G    +DYAHT
Sbjct: 292 LLARFNVDNLLNTAACLLALGTPFAAIPAKLAALHGVPGRAERIGLGN-GAAAIIDYAHT 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +L  IL+ +R    G++  VFGCGGDRD+GKRP+M + A   AD  ++TDDNPR+E+P
Sbjct: 351 PAALANILQGVRAHVPGKLWCVFGCGGDRDRGKRPLMAQAAEQYADAVVITDDNPRTENP 410

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             I A+ + G+        K  R EAIR  +  L   D +V+AGKGHE   I+    K  
Sbjct: 411 ADIIADSLRGMGHREKAWIKRPREEAIRFVLPQLEAGDAVVIAGKGHEDYQILGT-TKHH 469

Query: 483 SVDCDIIR 490
             D + +R
Sbjct: 470 YSDQETVR 477


>gi|262276876|ref|ZP_06054669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
 gi|262223979|gb|EEY74438.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
          Length = 460

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 140/494 (28%), Positives = 246/494 (49%), Gaps = 37/494 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++++I ++F                       +DSR ++   +F   + N +  + F+
Sbjct: 1   MKIKEIINRNF----------------------CTDSRLLKRNDVFFDFLSNSKKINPFL 38

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              I +    I  S   + ++           ++  N R        + Y K P+NI AV
Sbjct: 39  KSIIKKKPSLIFSSIKVNYRNS----------VISKNIRNLYLSLIKKKYKKIPKNIFAV 88

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK+SVA+F  Q+   +      IG      +   + N LTTPS + +   L++++ 
Sbjct: 89  TGTNGKTSVANFFYQLHILNKKPCANIGTLGYFYNKKRKKNNLTTPSNLDIYNFLNFINK 148

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + +  V +EASSHGLDQ RL+G+K     FTN  +DH+DYH++ +AY N+K++LF + L 
Sbjct: 149 KKIRTVILEASSHGLDQDRLNGLKFKGVVFTNFSQDHLDYHKSMKAYLNSKLKLFRQNLK 208

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K+   +   D+     +  +      + +        + +  V   ++K  + ++ +   
Sbjct: 209 KKGNIV-CNDNIKKILIKNKISKISFKYVLDNKIKYPVKIINVKKNNSKTLIKLNFKNNI 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           + F   L G+FQ+ N   +  L ++ G+    + + LEK+  + GR   +        I 
Sbjct: 268 YTFNINLIGQFQIENLYQSIILALSSGLKIKEIFKVLEKVKPIEGRLNIIKNK--KKTIC 325

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAHT + L+ +L+ ++   + ++ +VFGCGG+RD  KR  MG+IA  L +  I+T+DN
Sbjct: 326 IDYAHTPDGLKKVLETLKNHYNKKVNIVFGCGGNRDTDKRKKMGQIANKLCNKVILTNDN 385

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           PR EDP+ I  +I   +       NR  AI+ AI++  +++VL++AGKGHE   I  N  
Sbjct: 386 PREEDPKNITKQIFKSVKKAEVIHNRKLAIKKAIKITKEKEVLLIAGKGHENYQIFKN-R 444

Query: 480 KKMSVDCDIIREIL 493
                D D+ ++ L
Sbjct: 445 IIYFSDFDVAKKNL 458


>gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
 gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
          Length = 481

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 127/497 (25%), Positives = 212/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR ++AG +F A  G       ++  
Sbjct: 9   DILKKDSLFREIIDQ-GHYYYNYSDVDFDSISYDSRKVKAGTLFFA-KGATFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P++VV++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLGWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVH 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G +H+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVVINSDMDHFSVLKEQVENQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N++ D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIADEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  I    L
Sbjct: 465 GKKEDYPGDAAIAERYL 481


>gi|331696615|ref|YP_004332854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326951304|gb|AEA25001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 501

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 150/476 (31%), Positives = 226/476 (47%), Gaps = 15/476 (3%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   +  +  ++ G +F A+ G++  G  F   A+A GA AI+   A + ++  A   
Sbjct: 25  RPVTGATLRASDVRPGDLFAALPGSRAHGADFTAAALAAGAVAILTDPAGAAREAVAQAA 84

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              P+LV +  R+ L   A+R+YG       ++ VTGTSGK++V   ++      G ++ 
Sbjct: 85  --VPVLVHEAPRRVLGDLAARIYGDPTARLDVVGVTGTSGKTTVGHMLEAGLAAGGRATG 142

Query: 146 QIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G  T+ I      +  TTP    L    + ++ +GVT V++E SSH L   R+ G + 
Sbjct: 143 LLGTVTTRIRGAEAPSLFTTPESPDLQALFAVMAERGVTDVAMEVSSHALALDRVAGTRF 202

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +FTNL +DH+D+H+    YF AK  LF+      +   +   D      +   H   
Sbjct: 203 SVAAFTNLSQDHLDFHRDMDDYFEAKALLFDPSRQGAARRRVVCVDDEWGRRLADRHPDA 262

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V + G    +            Q    +  G        LPG + V NALVA     A
Sbjct: 263 VTVATTG-PADWTAESVHQDDDGTQSFVAARPGGTVPVRLRLPGRYNVANALVALACLDA 321

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+ + +    L +L V PGR + V        + VDYAH   ++  +L  +R    GRI
Sbjct: 322 AGVPAEVAAPRLAELAV-PGRMQRVDAGQ-DFLVVVDYAHKPAAVGALLAALRGQVGGRI 379

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------G 438
           + V GCGGDRD+GKRP+MG IA   +D+ +VTDDNPR+EDP  IR  +  G         
Sbjct: 380 VTVLGCGGDRDRGKRPLMGAIAAAGSDLLVVTDDNPRTEDPAAIRRAVREGAEAEPRRGE 439

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +E G+R  AI  A+      D +VVAGKGHE    + +G K    D D +R  L 
Sbjct: 440 IVEIGDRRAAIAAAVAAARPGDAVVVAGKGHEKGQEI-DGVKHPFDDVDEVRAALR 494


>gi|213965229|ref|ZP_03393426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
 gi|213952081|gb|EEB63466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
          Length = 524

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 143/485 (29%), Positives = 216/485 (44%), Gaps = 37/485 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            +  G +F A+ G +  G  +  Q+    A A++           A      P+LVVD+ 
Sbjct: 38  DVPEGGMFAAVPGTRTHGARYAQQSA---ATAVLTDEEGLKILREAGETR--PVLVVDDV 92

Query: 99  RKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SS 155
           R  +   A+ +Y    +   I+ VTGTSGK++    ++     +G S+  IG T T  + 
Sbjct: 93  RAVMGHVAAEIYDHPSDSLTIIGVTGTSGKTTTTYMLEGALLAAGCSTGIIGTTGTRING 152

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
            A  + LTTP    L +    + S+GVTHV +E SSH L   R+DG+    G F NL +D
Sbjct: 153 RAVPSSLTTPEAPALQRLFHQMLSEGVTHVVMEVSSHALSLGRVDGVSFDVGCFLNLSQD 212

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKE-SPAIIYADDAYSKEVMKR--------------A 260
           H+D+H+T + YF AK +LF+   P     A++  DD +   +                  
Sbjct: 213 HLDFHKTLEEYFQAKAKLFDPAGPTHAPKAVVCIDDDWGVRMADIAAGDPDVQVTTVHTQ 272

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           H    +  +     ++       A +  Q V ++    D   +               A 
Sbjct: 273 HRVTDKSPAAEVFAEWHAAAATVATNGVQHVELTRNNTDTVEVEVPLPGAFNVANAAVAW 332

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +     +    +       VPGR E +          VDYAH   ++  +L  +R  T
Sbjct: 333 AVLDAVGHAKDAAKSGLAQVRVPGRMERIDRGQ-DFLAVVDYAHKPAAVAEVLATLRAQT 391

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR++VV G GGDRD  KRPIMG  A   AD+ I+TDDNPRSE P +IRA ++ G    +
Sbjct: 392 EGRVLVVVGAGGDRDSAKRPIMGAEAACGADVVIITDDNPRSEVPSEIRAAVVAGAKEAV 451

Query: 441 ------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
                       E G+R +AIR  +E+ +  D +VVAGKGHET   +  G      D + 
Sbjct: 452 ASGKASSDTVVEEIGDRGQAIRRVVELAHSGDSIVVAGKGHETGQDIG-GVIHPFDDREQ 510

Query: 489 IREIL 493
           + E L
Sbjct: 511 LAEAL 515


>gi|300741260|ref|ZP_07071281.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
 gi|300380445|gb|EFJ77007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
          Length = 572

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 132/518 (25%), Positives = 223/518 (43%), Gaps = 43/518 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +    +   Q  E  +  +S DSR ++   ++VA+ G K  G  F  +A+   A AI+
Sbjct: 42  EALGAHPVLEHQGSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101

Query: 73  VSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
             +A +     A +      +LV D+ R  +   A+ +YG      L     +G +   +
Sbjct: 102 TDTAGARMIREANLSLDGCSLLVCDSLRPVIGSLAALIYGSQDHKNLNRYAVTGTNGKTT 161

Query: 132 FVQQ----ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                           +  IG     +   +  + LTTP  +++   L+ +  +GV+H +
Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIMGERGVSHAA 221

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH +D HR+DG+      FTNL +DH+D H T Q YF++K +LF     +   A+I
Sbjct: 222 MEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTPERTEC--AVI 279

Query: 247 YADDAYSKEVMKR---------------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            ADD + +++++                 +  G   +   +      +  V       + 
Sbjct: 280 TADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVERDGLGHRF 339

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-------HVVPG 344
           T++    D              +    A L + IG      +     L        +VPG
Sbjct: 340 TLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADGTALTPIVPG 399

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + +          VD+AH  + L   L+ +     GR+I+VFG  G+RD  KRP+MG+
Sbjct: 400 RMQLISLAPH---TIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDHLKRPLMGE 456

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----------AIRTAIE 454
           IA   ADI IVTDD+P  EDP  IR  ++ G      +G R            AI  AIE
Sbjct: 457 IAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPREVAIARAIE 516

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + + +D +++AG+GHET   V   + ++    +  + +
Sbjct: 517 LADARDAILIAGRGHETAQDVAGTDVQLDDRVETAKAL 554


>gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 494

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 128/467 (27%), Positives = 207/467 (44%), Gaps = 24/467 (5%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR      IFVA  G   D H F    I QG + IVV+    ++            ++V 
Sbjct: 30  SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNRKQEVKG-------EVTQVIVP 82

Query: 97  NTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI- 153
           +T +  S+ A  L+    +      VTGT+GK+S+A+ +  I +    +S  +G      
Sbjct: 83  DTLRVASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQI 142

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +        TTP  + L K +          +++E SSHGL   RL G++     F+NL 
Sbjct: 143 NEEKTKGANTTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRGVEFDVAVFSNLT 202

Query: 214 RDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +DH+D+H T +AY +AK        E L KE   ++  DD +SK +              
Sbjct: 203 QDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSKYLETVTPYEILTYGID 262

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                    + +       Q   +     +    P  G+F + N + A     + GID  
Sbjct: 263 NEAQFM--AQNIKESLQGAQFDFATPFGTYHVSSPYVGKFNISNLMAAMIAVWSKGIDFK 320

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++E ++ L  V GR E +  +     + +DYAHT++ +  ++  ++     ++I + G 
Sbjct: 321 DIVEVVKSLEPVEGRLEVLDPSL-PIDLIIDYAHTADGMNKLIDAVQPFVKQKLIFLVGM 379

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEA 448
            G+RD  K P MG +A   AD  I T DNP  +DP+ + AE+  G     +IE  +R E 
Sbjct: 380 AGERDLTKTPEMGAVACR-ADYVIFTPDNPADDDPKMLTAELAKGATHNNYIEFEDRAEG 438

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           I+ AIE+ N  D +V+A KG E   I+    K    D     +++GL
Sbjct: 439 IKHAIEVANPGDTVVLASKGREPYQIMPGHVKVPHRD-----DLIGL 480


>gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 481

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 126/497 (25%), Positives = 213/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR ++ G +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSDVFFDNISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI+QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+        +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K S A++   D     V+K                    ++   A        ++ +   
Sbjct: 234 KNSRAVVINSDMDHFSVLKEQVEDQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N++ D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  I    L
Sbjct: 465 GKKEDYPGDAAIAERYL 481


>gi|190570599|ref|YP_001974957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019149|ref|ZP_03334956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190356871|emb|CAQ54245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995258|gb|EEB55899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 520

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 179/525 (34%), Positives = 278/525 (52%), Gaps = 59/525 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE------- 54
           +L++L++                  + +I  V+ + + ++ G++FV +   +        
Sbjct: 4   RLKELLHN-----------IVNADFDIEIKGVTCNPKRVKEGYLFVCVS-ERSKEHVTCL 51

Query: 55  -DG--HLFIPQAIAQGAEAIVV----------------------SSAYSLQDFSATIRSN 89
            +G  H  +   I QGA+  V+                       +   +     T   +
Sbjct: 52  PNGCVHNCVDVVI-QGAKKDVIPVLRHWDPENLIVNKHTRQLYNENWIPVSATRMTSTPS 110

Query: 90  TPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             +L   + +   S   SR Y  K P+ + AVTGT+GK+SV  F +QI Q    +   IG
Sbjct: 111 FAVLYHSDPQGIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ---DNVASIG 167

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T  ++  +DN LTTPS   L   L  ++++ V H+++EASSHG+DQ+R+ G++L A 
Sbjct: 168 TLGTCVNNNRKDNSLTTPSADDLYSTLRDINNKNVEHLALEASSHGIDQYRIHGLRLNAA 227

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTN  +DH+DYH++   YF AK RLF+E+LPKE  AI+ AD     E++  A   G +V
Sbjct: 228 AFTNFSQDHLDYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKV 287

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G +   I L K     N Q +TI +  + ++  FP+ G+FQ YN L A G+ I+ G+
Sbjct: 288 ITYGKKNSDITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGM 347

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D       ++KL    GR E V         +VDYAHT ++L+  L +++   + +I++V
Sbjct: 348 DYQ--RMCIDKLASPSGRMEKV-----NTFAFVDYAHTPSALKQALLSLKWHFNKKIVLV 400

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGG+RDQ KR  MGKIA  LA   IVTDDNPR EDP KIR +I+   P  +E G+R +
Sbjct: 401 FGCGGNRDQTKRAEMGKIAQMLAGKVIVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKK 460

Query: 448 AIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           AI   I +  ++  +L+VAGKGHE   I+  G+     D ++IRE
Sbjct: 461 AIEKGINIAHDENMILLVAGKGHERFQIIE-GQSLEFSDVEVIRE 504


>gi|148273045|ref|YP_001222606.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830975|emb|CAN01920.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 514

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 131/477 (27%), Positives = 213/477 (44%), Gaps = 20/477 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V+  S  +Q G ++V + G +  G  F   A A GA A++          +    S  
Sbjct: 40  TGVTLSSGDVQPGDLYVGLRGVRVHGARFAADAAASGAVAVLTDPDG----LADAQGSGL 95

Query: 91  PILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++  + R  L   A+ ++   ++P  +  VTGT+GK+SV   +  + ++ G+ +    
Sbjct: 96  PVILTPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTS 155

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                    +  +RLTTP    L   L+ +    V  V++E S+  L +HR+DG+     
Sbjct: 156 TAERRIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDIA 215

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +F NL  DH+D +   + YF+AK   F+    +     +  +         R        
Sbjct: 216 AFINLSHDHLDDYADFEEYFDAKAAFFDPDRARRGVVSLDTEWGQRIVDGSRIPMTTIAS 275

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                    + + +        ++    + +      P+PG F   NA +A  + +  G 
Sbjct: 276 KPGVDADWTVTVLEQTPDSTGFRLE-GPDNRVLVSRVPVPGWFMAANAGLAIVMLVESGY 334

Query: 328 DSALVLEHLEK----LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           D   V   L++       +PGR E V +   G   +VDY HT ++ E  L+ +R  T G+
Sbjct: 335 DLDAVAHVLDRDGGIQAYIPGRAERV-SGETGPLFFVDYGHTPDAFEQTLQALRPFTPGK 393

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------P 437
           +++VFG  GDRD  KR  MG IA  LAD+ ++TD +PR EDP  IRA +I G        
Sbjct: 394 LVMVFGADGDRDTTKRAEMGAIAARLADVVVITDYHPRYEDPASIRASLIAGAMAAVPDR 453

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              E  +   AIRTA+ ++ + D ++VAG GHE  H V  G K      D  R  L 
Sbjct: 454 EIHEVPDPATAIRTAVSLVGEGDTILVAGPGHEDYHEVA-GRKIPFSARDDARAALR 509


>gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 481

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 129/497 (25%), Positives = 214/497 (43%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A  G       ++  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYNEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI+QG    V    Y +           P++VV++ +K +SL A   YG   E   ILA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+        +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K S A++   D     V+K                  I   K  +     ++    + + 
Sbjct: 234 KNSRAVVINSDMDHFSVLKEQVEHQEHDFYGSQSSNQIDNSKAFSFSATGKLAGDYDIQ- 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 293 ------LIGHFNQENAVAAGLACLRLGASLENIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N++ D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  I    L
Sbjct: 465 GKKEDYPGDAAIAERYL 481


>gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 525

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 144/478 (30%), Positives = 222/478 (46%), Gaps = 17/478 (3%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           + R   +  V+SDSR  + G +F A  G K  G  F   A+  GA A++  +        
Sbjct: 33  EARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFAASAVEAGANAVLTDAQGRDILRR 92

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
                + P+LVVD+ R  +   A+ + G+     +  AVTGT+GK++ A  V+ I    G
Sbjct: 93  DLGGRSVPVLVVDDPRAAVGKAAALILGEPAADLDSYAVTGTNGKTTTAYMVESILGALG 152

Query: 142 LSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                IG      +  +    LTTP P  L   L++    G T V +E SSH L Q R D
Sbjct: 153 RKPGLIGTVEIRLAGMSVPAHLTTPMPDELQSYLAFHRRGGGTDVVMETSSHALVQGRSD 212

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKE 255
            ++     FTNL +DH+D+H T + Y+ AK  LF     + +   +  +      A    
Sbjct: 213 PVRFTVAGFTNLTQDHLDFHGTMERYYQAKASLFTPERARNAVVSVDGEYGRRLLAECAP 272

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            ++    A      +      +   K  A+     V  S +G+       LPG+F V NA
Sbjct: 273 RLEGEVAALAVDSGLPDLPDGVVGWKALAMEGSSFVLESTDGRRLATSTSLPGDFNVANA 332

Query: 316 LVAAGLCIAIGIDSALVLEHLE--KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            +AA + +  G     +   L       VPGR E +       R+ VD+AH + +L   +
Sbjct: 333 ALAAVMVMTAGYSPDELARALPAGINPAVPGRMEVLNAR---PRVIVDFAHNTEALVNAM 389

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           K +R  T GR++V+ G  GDRD+GKRP MG       D   +TDD+P +EDP  IRA +I
Sbjct: 390 KALRPSTEGRLVVLTGSAGDRDKGKRPAMGAAVARYGDFVYITDDDPHNEDPAVIRAAVI 449

Query: 434 HGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
            G  G     +E  +R +AI  AI   +++D +++AG+GHET+  V     ++    +
Sbjct: 450 EGTRGFDTPVVEIADRSQAIDAAIAEASERDTILLAGRGHETIQEVAGVPIELDDRVE 507


>gi|311113335|ref|YP_003984557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
 gi|310944829|gb|ADP41123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
          Length = 572

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 132/518 (25%), Positives = 222/518 (42%), Gaps = 43/518 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +    +   Q  E  +  +S DSR ++   ++VA+ G K  G  F  +A+   A AI+
Sbjct: 42  EALGAHPVLEHQSSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKALEAQAHAIL 101

Query: 73  VSSAYSLQDFSATIRSN-TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
             +A       A +  +   +LV D+ R  +   A+ +YG      L     +G +   +
Sbjct: 102 TDTAGVRMIREANLSLDRCSLLVCDSLRPVIGSLAALIYGSQDYKGLNRYAVTGTNGKTT 161

Query: 132 FVQQ----ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
                           +  IG     +   +  + LTTP  +++   L+ +   GV+H +
Sbjct: 162 TTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIMGECGVSHAA 221

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH +D HR+DG+      FTNL +DH+D H T Q YF++K +LF     +   A+I
Sbjct: 222 MEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTP--ERTERAVI 279

Query: 247 YADDAYSKEVMKR---------------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            ADD + +++++                 +  G   +   +      +  V       + 
Sbjct: 280 TADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVERDGLGHRF 339

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-------HVVPG 344
           T++    D              +    A L + IG      +     L        +VPG
Sbjct: 340 TLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADGTALTPIVPG 399

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + +          VD+AH  + L   L+ +     GR+I+VFG  G+RD  KRP+MG+
Sbjct: 400 RMQLISLAPH---TIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGERDHLKRPLMGE 456

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----------AIRTAIE 454
           IA   ADI IVTDD+P  EDP  IR  ++ G      +G R            AI  AIE
Sbjct: 457 IAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPREVAIARAIE 516

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + + +D +++AG+GHET   V   + ++    +  + +
Sbjct: 517 LADARDAILIAGRGHETAQDVAGTDVQLDDRVETAKAL 554


>gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299]
 gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 211/472 (44%), Gaps = 17/472 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +++DSR +  G +FV IVG K DGH F   A+A GA AIV             +
Sbjct: 1   DVEVSGIANDSRVVLGGDVFVCIVGEKMDGHDFALDAVAAGAVAIVCERPID------GL 54

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
             + P +VV + R  L   A+  YG        + VTG SGK++V   V+ I   + +  
Sbjct: 55  GVDVPQVVVPSARAALPRLAAAFYGNPSASLTTVGVTGASGKTTVTHMVRAILDANDVRC 114

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG T   S    D   ++P  +   + ++ +   G    ++E SS  L Q R+D    
Sbjct: 115 GVIGTTG-YSLDDYDVPTSSPDALQCQQLMAGMLDNGARATAMEVSSRDLAQGRVDCCDF 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL  DH +          A++        ++   I       S           
Sbjct: 174 DVAVFTNLRGDHHEGDAASCRNATAELFRRLTDPERQRAVINL---DVSTAEDGEKPFDD 230

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S       + +++      +  VTI      FD +  L GE  V N   A    IA
Sbjct: 231 AAYFSEAASAADVFVERADLSLFETAVTIRTPVGTFDAITGLVGEVNVSNVAAAVAAGIA 290

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           + I   ++ E +E +   PGR E V    +   + VDYA T  +L+  ++++R   +  +
Sbjct: 291 LEIPLDVIAEGVEAMEPAPGRMELV-DEGQPFSVVVDYAQTPEALKRAIESVRKTGANNV 349

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI---IHGIPGFIE 441
           I VFGCGGDRD  KR  MG++A + +DI  VT+DNPR+EDP KI  +I   +  +     
Sbjct: 350 ITVFGCGGDRDASKRAEMGRVADEYSDIVFVTNDNPRTEDPYKILDDITMKLQNMCRRYV 409

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +R  AIR AI M  + D +++ GKGHE   IV   +K    D    R+ L
Sbjct: 410 IVDRFYAIRAAIAMAGEDDAVLICGKGHEDY-IVVGTKKHWFDDRVEARDAL 460


>gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
 gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
          Length = 481

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/497 (24%), Positives = 213/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI+QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AISQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+        +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVVINSDMDHFSVLKEQVEHQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R +AI+ A+ + N++ D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIAEEISSYISHPVEKIVDREQAIKAAMAITNQELDAVIIAGKGADCYQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GVKESYPGDAAVAERYL 481


>gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
 gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
          Length = 498

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 142/479 (29%), Positives = 215/479 (44%), Gaps = 27/479 (5%)

Query: 31  NEVSSDSRHIQ-AGWIFVAIVGNKEDGHLFIPQAI-AQGAEAIVVSSAYSLQDFSATIRS 88
           + + +D R +     +F+A+ G K D        +  Q    ++V         SA+   
Sbjct: 26  SGLVTDHRRLTGPRDVFLAVPGEKFDPRNLADDLLTEQRCGLVLVDYDDQRAYQSAS--- 82

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              +L V + +  L+  A   Y        I+AVTGT+GK++V  ++ Q   + G  +  
Sbjct: 83  ---VLPVLHLKTMLADLAFGYYETPSDAMTIIAVTGTNGKTTVTRWLAQSLNQLGKKAAV 139

Query: 147 IGPTST--ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           IG               LTTP  + +   L  L   G   V +EASS GL+Q RL  + +
Sbjct: 140 IGTLGYGEPDQLKAHTGLTTPDVVGVHHLLHELRQAGFDTVCIEASSIGLEQRRLACVSI 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+DYH    AY  +KM L      +   A++ ADD++  E +    +  
Sbjct: 200 DVALFTNLSQDHLDYHGDMAAYGRSKMILASWPTLR--LAVVNADDSFGVEFLAHVQHRN 257

Query: 265 CRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +VG+       +  V      Q++ + + G       P+ GEF   N  +     +
Sbjct: 258 IDCSAVGHVSTADCQIVSVAHQEKGQRIELKINGAITQIDTPIIGEFNADNMALVFATLV 317

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---T 380
            +G D++ V   L  +   PGR +          + VDYAHT ++LE  L  +R      
Sbjct: 318 RLGYDASEVKRALAGVTPAPGRMQ---HIEGEPAVVVDYAHTPDALEKTLLALRPFANKR 374

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
            G++ VVFGCGGDRD+ KRP+MG  A+  AD  ++T DNPRSE PE I  EII GI    
Sbjct: 375 MGKLWVVFGCGGDRDRSKRPLMGAAAVAKADFVVLTSDNPRSEKPETILQEIIAGIDAPL 434

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                 + +R  AI  A+   N QDV+++AGKGHE+   +         D       L 
Sbjct: 435 QNNIHVEVDRPVAIEFAVRKANAQDVVLLAGKGHESTQTIGTQVIA-HSDAQCALTALS 492


>gi|295394734|ref|ZP_06804949.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972330|gb|EFG48190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 491

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 157/506 (31%), Positives = 229/506 (45%), Gaps = 35/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ DL  +             M   +R I  V +DSR  + G ++ A  G    G  F+
Sbjct: 1   MKIADLTLE---------HTTVMGDPDRDITSVDNDSRTTKPGGLYAAFPGANVHGASFV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIR-SNTPILVVDNTRKFLSLFASRLYGK-HPENIL 118
            Q + +G  A +   A       A +  ++  ILV +  R      A+++YG      + 
Sbjct: 52  TQLVDKGVRAFLTDPAGVEIMREAQVDLTDLTILVHEFPRAIAGHIAAQVYGTGESPAMF 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    +    Q  G ++  IG  +T I+    D+  TTP    L + L+ +
Sbjct: 112 GVTGTNGKTTTTFILDAFLQALGHTTGLIGTVATVIAGDRVDSVRTTPEASALHQLLARM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV   S+E SSH L QHR+DG+     SFTNL +DH+DYH T   YF+AK  LF   
Sbjct: 172 RDAGVDTCSMEVSSHALSQHRVDGVHFDVVSFTNLSQDHLDYHGTMDEYFSAKAALFTPE 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  ++   D ++++++  +      V                 +       +    
Sbjct: 232 FASRGVVVL--ADDWARKLVSVSQIPVVTVSMNSEDKPDY------LVVQGDSWELHTPQ 283

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGG 356
               F   LPG F V N  +A  + +  G+    V        VV PGR E V  N+   
Sbjct: 284 GRIPFTPVLPGLFNVTNTALALAMLLEFGVQFDAVASIANGTEVVVPGRMEVV--NAEHP 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R  +DY+HT +++E +L     ++   ++VV G GGDRD  KR  MG  A   AD+ IVT
Sbjct: 342 RAIIDYSHTPDAIEKVLD---RLSGDPVVVVVGAGGDRDSTKRAAMGVAAARGADVVIVT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DDNPRSEDP  IRA+++ G             E  NR  AIR A+E+      +VVAGKG
Sbjct: 399 DDNPRSEDPAAIRAQVLAGAREAAGARAHTVEECENRGTAIRRAVELAGANGTIVVAGKG 458

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HET   +  GE     D D  RE + 
Sbjct: 459 HETGQEIA-GEVLPFSDRDKTREAIE 483


>gi|330815438|ref|YP_004359143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
 gi|327367831|gb|AEA59187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
          Length = 514

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 142/474 (29%), Positives = 215/474 (45%), Gaps = 25/474 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + SDSR +QAG +F+A   +  D    I  A+A+GA A++V       D   +  ++  
Sbjct: 30  NLYSDSRAVQAGDVFLAYAVDGVDNRSHIAGALARGAAAVLVQPDGFAIDALDSAVTHA- 88

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              V +        AS  YG   + + AV  TGT+GK+S   ++             IG 
Sbjct: 89  ---VPDLGALAGEIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIATALSALRTPCAVIGT 145

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + +         TTP    L ++L+ L  +G   V++E SSH L Q R++G       
Sbjct: 146 LGSGMPGRLVATGFTTPDAPQLQRSLAQLRDEGAKAVAMEVSSHALQQGRVNGTAFDVAV 205

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AH 261
           FTNL +DH+DYH+T +AY  AK +LF     +   A++  DDA    ++           
Sbjct: 206 FTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRH--AVVNRDDAAGARLLATLAGRVRTVA 263

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  +     + +   +V A        +       +      G F V N L   G 
Sbjct: 264 YGIDERANAPEADRQLIAHEVRATATGTAFRLESSWGSAEVEVGTLGLFNVSNLLAVLGT 323

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI 379
            +   +     L  L +L  V GR + +G           VDYAHT ++LE  L+ +R I
Sbjct: 324 LLVADVPFEAALAELRRLESVNGRMQRLGGRVANDEPLVVVDYAHTPDALEKTLEALRPI 383

Query: 380 TSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
              R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSE P  I  +I+ G+
Sbjct: 384 AEARGGALVCMFGCGGDRDATKRPLMGGIAERLADRVVVTSDNPRSEPPLAILEQIVAGM 443

Query: 437 P---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                 +   +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D
Sbjct: 444 KTPGAALRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKREFSDQD 496


>gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
 gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
          Length = 513

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 155/497 (31%), Positives = 237/497 (47%), Gaps = 22/497 (4%)

Query: 11  FPELINQLSIFP-----MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            P+++  +++ P            +  V+ DSR +  G ++ A+ G    G  F   A+A
Sbjct: 19  LPDVLRSITVAPGPSGGAALAGVVLTGVTHDSRAVLPGDLYAALPGAHVHGADFAAGAVA 78

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGT 123
            GA A++     +    + + R   P+LV D+ R+ L+  A+ +YG       +L VTGT
Sbjct: 79  AGAVAVLTDPVGAA---ALSGRLAVPVLVTDDPRRDLAPAAAWIYGDPSSALTLLGVTGT 135

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK++ A  +    + +G ++  +G   T  +     +  TTP    L   L+ +  +GV
Sbjct: 136 NGKTTTAFLLDAGLRAAGYTTGLLGTVQTRVAGTVVPSVRTTPESGDLQALLATMVERGV 195

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              S+E SSH L QHR+D ++    +FTNL +DH+D+H T + YF AK  LFE      S
Sbjct: 196 GAASMEVSSHALAQHRVDALRFAGAAFTNLSQDHLDFHPTMEDYFAAKAALFEP---ARS 252

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A +   D      +             G    +     V          +  +G   D 
Sbjct: 253 AAAVVCVDDDWGRRLAALRPDARTYSVTGRPADWWPEDVVAGPGGSVFRALGPDGAKADL 312

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG F V NAL A  L  A+G+      E +  L  VPGR E +          VDY
Sbjct: 313 SLALPGRFNVANALGALALLAAVGVPLEAAAEGISSLPGVPGRMERIDAGQ-PFLALVDY 371

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           AHT  ++E +L  +R I +GR++VV GCGGDRD+ KRP+MG  A  LAD+A+ T DNPRS
Sbjct: 372 AHTPGAVETLLATVRPIVTGRVVVVLGCGGDRDRAKRPLMGAAAARLADLAVFTSDNPRS 431

Query: 423 EDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           EDP +I  +++       G    + + +R  AI  A+      D ++VAGKGHE+   V 
Sbjct: 432 EDPARILEQMLAGARGAPGAGEIVVEPDRASAIALAVGAAGPTDAVIVAGKGHESGQDVA 491

Query: 477 NGEKKMSVDCDIIREIL 493
            G      D +++R  L
Sbjct: 492 -GVVTPFDDREVLRSAL 507


>gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
          Length = 552

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 145/506 (28%), Positives = 227/506 (44%), Gaps = 34/506 (6%)

Query: 10  DFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              EL +QL +            ++ ++ DSR ++ G ++ A+ G +  G  F  QA + 
Sbjct: 16  TLEELADQLGVDARGAETPAAVVLSGITHDSRAVRPGDVYAALPGARVHGADFSAQAASL 75

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA AI+   A +       + +  P+LVV + R  +   A+ LYG    +   + +TGTS
Sbjct: 76  GAAAILTDPAGAGP----ALATGLPVLVVGDPRGRMGEVAATLYGHPGRDLLQIGITGTS 131

Query: 125 GKSSVAS--------FVQQICQRSGLSSFQIGPTSTISSFAQDNRL----TTPSPIYLAK 172
           GK++ A           +   + +G      G   T+     D R+    TTP    L  
Sbjct: 132 GKTTTAYLIEGGLRAAQEARAKETGEEIPPTGLIGTVEMRIGDERIKSERTTPEATDLQA 191

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +  +GV  +++E SSH L   R+D        F NL  +H+++H   + YF AK +
Sbjct: 192 LFAVMRERGVRALAMEVSSHALVLGRVDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQ 251

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF +   K        DD Y + ++  +        + G+       + V         T
Sbjct: 252 LFTKARSKLGVVNH--DDEYGRRLLTESEVPVISFSAEGHPDADWRAEDVIVGSLDSTFT 309

Query: 293 -ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  EG+      PL G F V N L A     A G+D     + +  +  VPGR E V  
Sbjct: 310 AVGPEGQRISARSPLAGPFNVANTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERVDA 369

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                   VDYAH ++++E +L+ +R +T GR+ +V GCGGDRD  KR  MG  A  LAD
Sbjct: 370 GQ-PYLAVVDYAHKTDAVESVLRALRKVTEGRLYIVLGCGGDRDTTKRGPMGAAAARLAD 428

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +A++T DNPRSEDP  I + ++ G            I   +R  AI  A+      D ++
Sbjct: 429 LAVLTSDNPRSEDPLAILSTMLAGAAEVPIHERGDVIIDADRAGAIAEAVVRAEAGDTVL 488

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDII 489
           VAGKGHE    + NG  +   D  ++
Sbjct: 489 VAGKGHEQGQDI-NGVVRPFDDRLVL 513


>gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 511

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 120/514 (23%), Positives = 203/514 (39%), Gaps = 26/514 (5%)

Query: 1   MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           M L ++I        F ELI         P +   R + ++S DSR ++ G +F    G 
Sbjct: 3   MTLSEIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K D   ++  A  QGA   +  + YS Q    +   + P ++V + +K ++  +   +G 
Sbjct: 62  KFDP-KYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGF 119

Query: 113 HPEN--ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167
              N  ++  TGT GK++   F + +  +  G    Q+                LTTP  
Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L + +       + ++ +E SS    + R+ G+ L  G F N+  DHI   +     F
Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVE--HPSF 237

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              +    E++      ++  + +    + ++AH+ G +V+S G        +     H 
Sbjct: 238 EDYLACKSEIIDNCRILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHG 297

Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              VT +     K       +          +AA    A     +           VPGR
Sbjct: 298 YFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR 357

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            EF+     G    VDYAH   SL      ++     GR+IVV G  G + + +R  +G+
Sbjct: 358 MEFIKDKQ-GVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGR 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
                AD+AI+T ++   EDP +I A+I   I       I   +R  AI  A  M    D
Sbjct: 417 ALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGD 476

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            L +A KG ET       +     D  I ++++ 
Sbjct: 477 ALFMAAKGRETFMHEKGKDVPYQGDYQITKQLME 510


>gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus deserti VCD115]
 gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Deinococcus deserti VCD115]
          Length = 493

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 142/507 (28%), Positives = 221/507 (43%), Gaps = 33/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL           L++      +  +  V+ ++  +Q G+ FVAI G K DGH F+
Sbjct: 1   MRLHDL--------AAALNVPTTSLPDLPVVGVTHNAAWVQPGFAFVAIRGAKFDGHSFL 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            Q    GA A++             + S  P L V + R  L+  A+ L G       ++
Sbjct: 53  QQVREAGAVAVLGE------GMPDGMNSPLPYLTVPSARAALADAAAALAGHPSRALKVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174
            VTGT GK++ +   + + + +GL +  +                   TTP    + + L
Sbjct: 107 GVTGTDGKTTTSWLTRHLLREAGLQTGLLSTVGFELPDGELRHFPAHFTTPEAPQVQQTL 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + + G + V +EASSH L   R+ G+      +T+L  +H+D+H T + Y        
Sbjct: 167 QDMVAAGASAVVLEASSHALALDRVRGVDWDVAVWTHLTSEHLDFHGTVENY----FADK 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+ +   A++ ADD ++ ++  R         S+   G       +          ++
Sbjct: 223 RRLVERAPFAVLNADDPWTGQL--RGVAPAETTYSLDGAGADWQATDIQERLTGLHFQVN 280

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                FD   P+ G F V NAL A      +G D+A +   L     VPGR E V    +
Sbjct: 281 SPLGAFDAALPMIGRFNVANALAAMAAAAHLGADAAQLAAGLASFRGVPGRMELVPAGGQ 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413
             R+ VD+AHT  SLE  L  +R  T+GR+ V+ G  G  RD GKR  +G++A  LAD A
Sbjct: 341 EVRVIVDFAHTPPSLEKALSTLRATTTGRLWVLIGSAGGPRDPGKRAPLGEVATRLADHA 400

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + T+++ R    E I  E+  G        FI  G+R EAIR  I+     D +++AGKG
Sbjct: 401 VFTEEDSRDTPLEDILREMERGARQGGRTNFISIGDRREAIRHVIQAAGSGDTVLLAGKG 460

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495
            E       G      +    RE L L
Sbjct: 461 PEDTLERLTGTLPW-NEVQEAREALAL 486


>gi|225677128|ref|ZP_03788128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225590832|gb|EEH12059.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 514

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 173/537 (32%), Positives = 265/537 (49%), Gaps = 73/537 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED----- 55
           MKL++L++                  + +I  V+ + + ++ G++FV +   +       
Sbjct: 1   MKLRELLHNII-----------DVNFDIEIKGVTCNPKRVKEGYLFVCVS-ERSKEYATC 48

Query: 56  --G------------HLFIPQAIAQGAE--------------AIVVSSAYSLQDFSATI- 86
             G            H  +   I QGA+               IV      L + +    
Sbjct: 49  DTGIHILPTESQCYVHNCVDVVI-QGAKKDVIPVLDYLDPENLIVNEHTKQLYNKNWIPV 107

Query: 87  -------RSNTPILVVDNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQ 138
                       +L   N ++  S   SR Y  K P+ + AVTGT+GK+SV  F +QI Q
Sbjct: 108 SATCMTNTPGFAVLEHLNPQEIYSEIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQIWQ 167

Query: 139 RSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
            SG ++  IG   T          N LTTP    L    + L    V H+ +E+SSHG+D
Sbjct: 168 NSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDL---YATLRGISVEHLVLESSSHGID 224

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF E+LP+   AI+ AD      
Sbjct: 225 QYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGKTAILNADIDEYGA 284

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++K A     +V++ G +G  I L +  + HN Q +T+ ++ + ++  FP+ G+FQ YN 
Sbjct: 285 LLKIAEKRSNKVVTYGKKGSDITLLEQTSTHNGQHLTVKIDNQIYNTFFPVLGKFQAYNL 344

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+      +       +EKL   PGR E V         +VDYAHT ++L+  L +
Sbjct: 345 LCAIGISGLNYREI-----CVEKLVSPPGRMEKVKP-----FAFVDYAHTPSALKQALLS 394

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++   + +II+VFGCGG+RDQ KR  MGKIA   AD  I+TDDN R EDP KIR +I+  
Sbjct: 395 LKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLH 454

Query: 436 IPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            P  +E G R +AI   +++  N+  +L+VAGKG+E   I+ N       D ++I+ 
Sbjct: 455 CPDALEIGGRRKAIEKGVDIAYNEGMILLVAGKGNEKFQIIGNQT-FEFSDVEVIKN 510


>gi|121998875|ref|YP_001003662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
 gi|121590280|gb|ABM62860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
          Length = 503

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 162/473 (34%), Positives = 234/473 (49%), Gaps = 12/473 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA---TI 86
           I  ++ D+R ++ G +F+A+ G+++ G  ++P A+  GA A+V      +   +A   T 
Sbjct: 28  IQGLTPDTRRLEPGAVFLALPGSRDHGLAYVPAALQAGAAAVVWDPQDEVDPGAARTATE 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +S  P++ V   R+ L   A RLYG       ++AVTGT GK+SV+ F+ Q+        
Sbjct: 88  QSGVPMVGVPGLRRHLGAIAGRLYGDPSRGMEVIAVTGTDGKTSVSHFIAQLLSGPEAPW 147

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G          +   LTTP    L KAL+   + G T V++EASSH L+Q RL G  
Sbjct: 148 GVVGTLGHGLVDDLRPGVLTTPDAAALQKALAECRAAGATGVAMEASSHALEQGRLAGTA 207

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +     T+LGRDH+DYH + +AY +AK RLFE        A +   D      +      
Sbjct: 208 VDLAVLTHLGRDHLDYHGSVEAYADAKSRLFEF---PSLRAQVLNLDDALGRRLHDRAAG 264

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                S       +  + V    +  Q+T+ V G       PL G F V N L A    +
Sbjct: 265 AAFTYSAAGAAADLAAEAVIPGADGVQLTLCVGGTRHSVRLPLFGHFNVANVLAAVAAAL 324

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G     VL  L  L  VPGR E    +     + VDYAHT  +LE  L  +R  T+GR
Sbjct: 325 ALGRPMDGVLARLPTLRPVPGRMEQFHADGSPL-VVVDYAHTPGALEQALTALRAHTTGR 383

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED-PEKIRAEIIHGIPGFIEK 442
           + VVFGCGG+RD GKRP+MG++A  LAD  ++TDDNPR ED      A       G    
Sbjct: 384 LCVVFGCGGERDTGKRPLMGEVAARLADRVLITDDNPRGEDAAVIRAAVAAGAGEGAEVV 443

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             R  AI  AI      DV+++AGKGHET   + +G++    D + +  +L +
Sbjct: 444 AGRGVAIGGAIAWGAPGDVVLIAGKGHETEQEI-DGQRFPFSDREEVARLLSV 495


>gi|93007201|ref|YP_581638.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychrobacter
           cryohalolentis K5]
 gi|92394879|gb|ABE76154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter cryohalolentis K5]
          Length = 570

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 146/510 (28%), Positives = 234/510 (45%), Gaps = 47/510 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVS--------- 74
                +   DSR + +  +FV +  +    +     + QA A  A  I+           
Sbjct: 59  NIPFQQFCLDSRQLASNDVFVLLKSHTPNCQKSRDHLYQA-ANNAAFILSEIDPRALLNT 117

Query: 75  ------------SAYSLQDFSATIRSNTPILVVDNTRKFLS-LFASRLYGKHP---ENIL 118
                       +  + +     +    P+L V N R FL  L  +RL  + P     ++
Sbjct: 118 TSVSNHADITLPNDSTAKAQQQLVALPCPVLHVPNIRDFLGTLIQARLQYQQPVTLPTVI 177

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
           AVTGT+GK++++  V Q+ Q +G+SS  +G               TT   + + + L  +
Sbjct: 178 AVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRFGALVQASHTTGDVLAVQQFLYQM 237

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
             +G   +++EASSHGLDQ RL G+ +    +TNL RDH+DYH     Y  AK +LF++ 
Sbjct: 238 GKEGAELLALEASSHGLDQQRLQGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFDKA 297

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTI 293
             P  + AII  DD +++ ++  AH +   V +               +       ++++
Sbjct: 298 HFPDLTHAIINIDDEHAQIMLDTAHASNLTVWTYSLDSLKTATFVAANITPSLRGVEISL 357

Query: 294 SVEGKDFDFLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +  D          PL G F V N L A    +A+GI    +   + +L    GR + 
Sbjct: 358 RTDFDDGTMNHLDIVSPLLGRFNVANLLAAMAAAVALGISLEHIAAVVPQLQGAVGRMQR 417

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +N   G   VDYAHT ++L  +L +++T   G++  VFGCGGDRD GKRP+M +  L 
Sbjct: 418 VPSN--DGCFIVDYAHTPDALSQVLASLKTHCKGQLWAVFGCGGDRDAGKRPLMAQAGLA 475

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AD  ++T DNPR+EDP  I  ++  G+          +  R  AI  A+      D++V
Sbjct: 476 GADKVVLTADNPRTEDPNAILQDMQVGMSTEQYQRTHIEPARQAAIEYAVNQAAADDIVV 535

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AGKGHET   + N  +    D  I++  L
Sbjct: 536 IAGKGHETYQEI-NHVRYDFDDSVILQNAL 564


>gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 143/494 (28%), Positives = 222/494 (44%), Gaps = 20/494 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  QL +   +  E  +  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELAGQLGVAAPE-TEAGVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAAA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   + + +       +  P+LV +N R  +   A+ +YG+       + +TGTSGK++
Sbjct: 76  VLTDPSGAER----AAATGLPVLVAENPRAGMGELAATIYGRPGRELLGIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   + +  +         I      +  TTP    L    + +  +GV  V++E
Sbjct: 132 TAYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG       FTNL  +H+++H   + YF AK +LF     +        
Sbjct: 192 VSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFTPARSRLGVVNT-- 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
           DD Y + +  +A        + G+       + V         T+            PL 
Sbjct: 250 DDEYGRRLAAQATVPVVTYSAEGHPDADWRAEDVEVGPLDSTFTVLGPDGVRVTARSPLA 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A     A G+D     + +  +  VPGR E V          VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDAGQ-PYFAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +LK +R +T GR+ +V GCGGDRD  KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLKALRKVTKGRLHIVLGCGGDRDTTKRMPMGAAAARLADTAVLTSDNPRSEDPLA 428

Query: 428 IRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           I A ++ G                +R  AI  A+      D ++VAGKGHE    +  G 
Sbjct: 429 ILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKGHEQGQDIA-GV 487

Query: 480 KKMSVDCDIIREIL 493
            +   D  ++RE +
Sbjct: 488 VRPFDDRQVLREAI 501


>gi|308177864|ref|YP_003917270.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
 gi|307745327|emb|CBT76299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
          Length = 530

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 136/485 (28%), Positives = 217/485 (44%), Gaps = 24/485 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  VS + + +Q G +F+ I G K  G  F+  A+A GA A++  +A           
Sbjct: 46  PQILGVSLNPQIVQPGDVFLGISGAKRHGAEFVETAVANGAVAMITDTAGLEFLGDGL-- 103

Query: 88  SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            + P+ VV + RK  +  A  +YG  +    +  VTGT+GK++    ++ I    G  + 
Sbjct: 104 -SIPVAVVADVRKSAAAIAQNVYGTDQRSPKLFGVTGTNGKTTTTYMIRAILDALGEETG 162

Query: 146 QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     +      + LTTP    L   L+ ++ Q V+ V++E SSH L   R+D ++ 
Sbjct: 163 LIGTIEMSARGQIIPSVLTTPESTQLHGVLARMAQQDVSSVAMEVSSHSLSYGRVDSLRF 222

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               +TNL +DH+D H T   YF  K +LF     + +  ++                  
Sbjct: 223 AVSGYTNLTQDHLDLHGTMDEYFETKAQLFTAERSERAVVMVDDQYGQRLAERALVPTET 282

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +        +   +   +           +G++      LPG F V N  +AA + +A
Sbjct: 283 LSLDEAHPSAYWRVTELAHSGLGHSFTLRHRDGRELRARTLLPGMFNVANGALAAVMVLA 342

Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            G++   +   L         VPGR + VG +       VD+AH S++L   L +IR   
Sbjct: 343 SGVELDTLQRALNAGDPLSVAVPGRMQVVGESPV---AVVDFAHNSDALAKALDSIRPGE 399

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
            GR IVVFG  G+RD+ KRP MG +A   ADI IVTDD+P  EDP  IR ++  G     
Sbjct: 400 QGRRIVVFGATGERDKTKRPDMGAVAARHADIVIVTDDDPHGEDPAPIREQVASGAQQVL 459

Query: 438 -------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                         R +A+  A+ + +  D ++VAG+GHE    V   + ++  D   + 
Sbjct: 460 DTERPGVQVHNIAPRAKAVEFAVSLAHANDAILVAGRGHEVSQDVAGIDVEL-DDRVELA 518

Query: 491 EILGL 495
           + L L
Sbjct: 519 KALNL 523


>gi|330813728|ref|YP_004357967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486823|gb|AEA81228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 464

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 234/463 (50%), Gaps = 16/463 (3%)

Query: 34  SSDSRHIQAGWIFVAIVGNKE--DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           S+D+R ++   IF  + G+K   DG  +  +A+ +    I+  +            S   
Sbjct: 14  SADTRTLRKSEIFFDL-GSKSNKDG-DYFFKALKKKPLFIITQN-------QKRNLSGKN 64

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V N   F     S  + K P+  +AVTGT+GK+SVA F  +I    G+    IG   
Sbjct: 65  FIIVKNIYSFYVKSISLKFKKKPKYKIAVTGTNGKTSVAFFYYKILNLLGIKVGSIGTLG 124

Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              ++      LTTP      K L++   + + H  +EASSHGL Q+RL+ I    G FT
Sbjct: 125 VFENTKKSKGNLTTPDFFSNHKNLNHFYKKRINHSIIEASSHGLKQNRLEKINFDCGIFT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL  DH+DYH+T + Y N+K+ LF++L+ K    +  ++      + K + N    +LS 
Sbjct: 185 NLTHDHLDYHRTMKDYLNSKLILFKKLIKKNGFLVTGSEVLEFSLLNKISKNKKLNLLSY 244

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +G  I +          ++ I++ GK       L G FQ+ N L A   C + GI   
Sbjct: 245 GRKGNIIKIISSKPNGQFTKLKINILGKVHTLKLKLIGNFQIENFLAATLACYSSGISFE 304

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +     ++   PGR +      +   + +DYAHT ++LE  +  I+   + +I +VFGC
Sbjct: 305 KIFRICSRIDNPPGRLQLFKK--QNKTVIIDYAHTPDALEKTIIEIQKFFNKKINIVFGC 362

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGDRD  KR  MGKIA  L +   +TDDNPR E+  KIR +I  G P  I   +R +AI+
Sbjct: 363 GGDRDHQKRKAMGKIAYKLCNKIYITDDNPRYENARKIRMQIKAGCPNAIVVPSRKQAIK 422

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++I MLN+ ++L++AGKGHE   ++ N +K    D   +   L
Sbjct: 423 SSISMLNE-EILLIAGKGHEEFQLIKN-KKIAFSDHHCVTRYL 463


>gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
 gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
          Length = 481

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 126/497 (25%), Positives = 211/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++ G +F A  G       ++  
Sbjct: 9   DILKKDSLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P++VV++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIVVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+        +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K S A++   D     V+K                    ++   A        ++ +   
Sbjct: 234 KNSRAVVINSDMDHFSVLKEQVEDQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +    +T D
Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIHVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R +AI+ A+ + N++ D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMVIAEEISSYISHPVEKIADREQAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  I    L
Sbjct: 465 GKKEDYPGDAAIAERYL 481


>gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 476

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 134/485 (27%), Positives = 224/485 (46%), Gaps = 27/485 (5%)

Query: 14  LINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L    ++  +   + +I   +S D+R ++  W+FV   G+  DG  F+ +A+ +GA  ++
Sbjct: 6   LNELFTLLHIPCEDTRILQGISDDTRDLKKDWLFVCRRGSAYDGATFLQEALDKGAV-VL 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVA 130
                  +    T         V+  R+ L       YG       ++ VTGT+GK+SVA
Sbjct: 65  CDEPLKQEHVYYTP-------YVERIRQALLEL---YYGDLCARLHVIGVTGTNGKTSVA 114

Query: 131 SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S + Q+      +  QIG  S        +   TTP    LA         G+THV +E 
Sbjct: 115 SIISQLLAMEDCAVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAVQTGITHVVMEV 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSH +DQ+R+  ++     +TN+ +DH+DYH ++  Y   K +L   L P+ +       
Sbjct: 175 SSHAIDQNRISFLQFDDIVYTNITQDHLDYHLSRVHYRYTKFKLRRYLKPQGTIIY---- 230

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           ++    + +  + A    +S+G Q     L +V    +     +S   + + F   L G 
Sbjct: 231 NSDLSYMQELVNLAQHTCISIGMQAAHFPLSEVQLSAH----DLSFHLQGYAFHARLLGM 286

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYN   A  +    G     +++  E+L  V GR E       G  I++DYAHT++++
Sbjct: 287 VNVYNLAEAIVVVHRTGCSYERLVQDCEQLKPVSGRMEV--MEVGGFTIWIDYAHTASAV 344

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           + +L    ++  GRI+ + GCGG+RD+ KRP M  IA   +DIA+ T DNPR E    I 
Sbjct: 345 KELLLFANSVKKGRILTILGCGGERDRTKRPQMAAIAAAYSDIAVFTSDNPRGESVADIL 404

Query: 430 AEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            ++        +   NR  AI+  I++    D++++AGKG E   I   G +    D   
Sbjct: 405 QDMKCESFSNAVVFENRYFAIKHTIKVAQNSDIIIIAGKGSEET-ITAFGREYPFSDRSC 463

Query: 489 IREIL 493
           ++E L
Sbjct: 464 VKERL 468


>gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 508

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 220/472 (46%), Gaps = 19/472 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDG-HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIR 87
           I+ + SDSR ++ G++F  +     +  +  +  AI  GA+ I+  +    ++ +   I 
Sbjct: 26  ISGIQSDSRLVKPGYLFCVLKKKNINETNKHMIHAIKNGAKIILYDTKQKFKNGTLKKII 85

Query: 88  SNTPILVVDNTRKFL-SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           ++ PI+      K L  +     + ++   ++ +TGT+GKS+    V Q      +    
Sbjct: 86  NHVPIIYFFKLSKNLPQILKKYYHFENNFTLIGITGTNGKSTTTHIVSQWANLLNVKIGI 145

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     I++  +    TT S   + + L ++  Q +   ++E SSHG+ QHR++ +   
Sbjct: 146 MGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKTFAIEISSHGIVQHRIEQLPFK 205

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  +H+DYH+T   Y NAK   F +           ADD  +K  +K+ ++   
Sbjct: 206 IAILTNITPEHLDYHRTMDNYINAKKAFFFKYNINTLIIN--ADDLIAKTWIKKLNHKNV 263

Query: 266 RVLSVGYQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
             ++   Q         +IH  K+    N   +  +           L G F V N L+A
Sbjct: 264 ITITTKDQNFNSISPKKWIHANKIIQKQNCTNIHFNSSWGHGILNSTLIGHFNVINILLA 323

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               + +      +++  + +  + GR E         ++ +DYAH +N L+ +L  ++ 
Sbjct: 324 LATLLELNYPITDLVKVCKYIKTISGRME-HIHIVNKPKVIIDYAHNTNGLKNLLSTLKE 382

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                +I  +FGCGGDRD+ KRP MG IA  ++D  I+T+DNPR+E P KI   I+ G  
Sbjct: 383 IFNKKKIWCIFGCGGDRDKTKRPYMGSIAEKMSDQVILTNDNPRNEHPLKIIKNILSGCK 442

Query: 438 ---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                    NR  AI+ A+   +K+D++VVAGKGHE   I+ N +     D 
Sbjct: 443 FKNKIRIIPNREHAIKFAVNNADKEDIIVVAGKGHEKYQIINN-KYYHFSDH 493


>gi|126643214|ref|YP_001086198.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 414

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 133/405 (32%), Positives = 202/405 (49%), Gaps = 18/405 (4%)

Query: 102 LSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SF 156
           +  +  R   +     P  I+AVTGT+GK++++  + ++          +G T       
Sbjct: 1   MGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLIAELISSQQQRCAVMGTTGNGILPN 60

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
              +  TT   + L  AL   + QG T  S+EASSHGL+Q RL+G  +    ++NL RDH
Sbjct: 61  LTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDH 120

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGY 272
           +DYH T +AY  AK RLF+        A+I  DDA++  ++K A N   +      S+  
Sbjct: 121 LDYHGTLEAYAEAKARLFQF--NSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSLTQ 178

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                ++  +          +  +   F    PL G F V N + A       G D   +
Sbjct: 179 NTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFDLQAL 238

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           +  + KL   PGR + +  + R     VDYAHT ++L  +LK ++   S ++  VFGCGG
Sbjct: 239 VNFVPKLIGAPGRMQVIRDDER--LFVVDYAHTPDALIQVLKTLKRHVSNQLWAVFGCGG 296

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEA 448
           DRD+GKRP+M + ALD A+  I+T DNPR+EDPE+I A++  GI        E  +R EA
Sbjct: 297 DRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFSGHRMHEIHDRREA 356

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I+   E     D++V+AGKGHE    + NG +    D   +R  +
Sbjct: 357 IKFVAEQAQAGDIVVIAGKGHENYQEI-NGVRHWFDDVVEVRSAI 400


>gi|227891687|ref|ZP_04009492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866490|gb|EEJ73911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 510

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 122/511 (23%), Positives = 204/511 (39%), Gaps = 47/511 (9%)

Query: 14  LINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGA 68
           L+++  +      E+K     V+ DSR +    +F         G+    ++  A+ +GA
Sbjct: 11  LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC------KGNFKPSYLTSALEKGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            A V    Y+          +   ++V N +K ++L  +  YG       I+A TGT GK
Sbjct: 65  TAYVSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGK 117

Query: 127 SSVASFVQQ-----ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           ++ A F +        ++  L S               + LTTP  + L   +    + G
Sbjct: 118 TTSAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNG 177

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +TH+ +E SS    ++R+ G+    G F N+  DHI  ++          +    +  K 
Sbjct: 178 MTHLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKC 237

Query: 242 SPAI---------------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                                  +       K A  +    + + YQ  F  L K     
Sbjct: 238 CVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEV 297

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                       D  +   +PG++   NA  A    +  G       + L+++H+ PGR 
Sbjct: 298 KGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRM 356

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T + G  IYVDYAH   SL+ +   ++  T  GR+I V G  GD+   +RP  GK 
Sbjct: 357 EIIKTKNNGT-IYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKA 415

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
             +  D  I+T D+P  EDP KI  EI   I         + +R  AI  AI+M    D+
Sbjct: 416 VSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDI 475

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +V+AGKG +    +   +     D ++ ++I
Sbjct: 476 VVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506


>gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus
           geothermalis DSM 11300]
 gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis
           DSM 11300]
          Length = 488

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 130/484 (26%), Positives = 206/484 (42%), Gaps = 24/484 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P+L   LS       + ++  V+  +  ++ G++FVAI G + DGH F+P+  A+GA A
Sbjct: 3   LPDLAAALSTPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARGAVA 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++           A + S  P L V N R  L+  A+ L G       ++ VTGT GK++
Sbjct: 63  VLGE------GLPADVASPLPYLSVPNARAALADAAAALAGHPSRALKVVGVTGTDGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
            +   + + + +GL +  +                   TTP    +   L  L   G   
Sbjct: 117 TSWLTRHLLRAAGLRTGLLSTVGYELPDGVLRHFPAHFTTPEAPQVQTTLRALLEAGGEA 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +EASSH L   R+ G+      +T+L  +H+D+H T + Y         +L+ +   A
Sbjct: 177 AVLEASSHALALDRVRGVDWDVAVWTHLSSEHLDFHGTLENY----FADKRKLIERAPFA 232

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD ++ ++  R         S   Q      + +          ++    +F    
Sbjct: 233 VLNVDDPWTAQL--RGVAPQETTYSAENQHADWQARHIEERATGLHFQVASPLGEFAAHL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G F V NAL        +G     ++E L     VPGR E V   +   R+ VD+AH
Sbjct: 291 PMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPGRMELVPGGASDPRVIVDFAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           T  SLE  L  +R  T GR+ V+ G  G  RD GKR  +G++A  LAD A+ T+++ R  
Sbjct: 351 TPPSLEKALTTLRATTGGRLWVLLGSAGGPRDPGKRAPLGEVATRLADHAVFTEEDCRDT 410

Query: 424 DPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
               I  E+  G        F    +R EAIR  I      D +++AGKG E        
Sbjct: 411 PLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARPGDTVLLAGKGPEDTLERNGE 470

Query: 479 EKKM 482
               
Sbjct: 471 VIAW 474


>gi|320335408|ref|YP_004172119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
 gi|319756697|gb|ADV68454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
          Length = 486

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 134/507 (26%), Positives = 211/507 (41%), Gaps = 35/507 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL          +L++ P       +  V+  +  ++ G+ FVA+ G + DGH F+
Sbjct: 1   MKLHDL--------AAELNLTPP-AENPDVTGVTHHAGWVRPGFAFVAVRGARVDGHAFM 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A A GA  +              + S  P + V   R  L+  A+ L G       ++
Sbjct: 52  AEAAANGAVCVFGE------GLPDGVPSPLPYVRVPGARAALADAAAALAGHPSRALRVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174
            +TGT GK++ +   + + + +G+ +  +                   TTP    +   L
Sbjct: 106 GITGTDGKTTTSWITRHLLRAAGVRTGLLSTVGYELPDGALRHFPAHFTTPEAPEVQSTL 165

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S + + G   V +EASSH L   R+  +      +T+L  +H+D+H T + YF  K RL 
Sbjct: 166 SEIGASGGEAVVLEASSHALALDRVRAVDWDVAVWTHLTSEHLDFHGTVEQYFADKARLV 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E        A     +A      +    A   V              +          + 
Sbjct: 226 E-------RARFSVLNADDPWTAQLRPRAAAYVTYGVEDVADWRAGDIEERSTGLHFHVL 278

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +FD   P+ G F V+NAL A      +G     ++  L     VPGR E V     
Sbjct: 279 SPLGEFDAHLPMVGRFNVHNALAAMAAAAHLGSGVDALVAGLASFRGVPGRMELVPGGDA 338

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413
           G R+ VD+AHT  SLE  L+ +R+ T GR+IV+ G  G  RD GKR  +G++A  LAD A
Sbjct: 339 GVRVVVDFAHTPPSLEKALEALRSTTRGRLIVLLGSAGGPRDPGKRAPLGEVATRLADTA 398

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I T+++ R    + I  E+  G        F    +R +AIR A+ +    D +++AGKG
Sbjct: 399 IFTEEDHRDTPLDDILQEMARGAREAGRGNFELVPDRRDAIRRAVALARPGDTVLLAGKG 458

Query: 469 HETVHIVTNGEKKMSVDCDIIREILGL 495
            E        E     +    R  L +
Sbjct: 459 PEDTLE-RGAETLPWDEVAEARAALAV 484


>gi|33862503|ref|NP_894063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9313]
 gi|46576942|sp|Q7V8U6|MURE_PROMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33640616|emb|CAE20405.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 507

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 142/489 (29%), Positives = 222/489 (45%), Gaps = 19/489 (3%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P       +  VS DSR +  G +F+ + G + DG  F  QA+A    A       +  
Sbjct: 16  VPEGLANPSLAMVSCDSRSVAQGCLFLGLPGEQVDGGSFWRQALAA--GAEAAVIGPAAA 73

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQ 138
                  ++  ++V +    ++   A+  + +       + VTGT+GK++    ++ +  
Sbjct: 74  ALQPPGPTDAVVVVPEPVAAWVGQLAAAFWQQPSSRFALIGVTGTNGKTTTTHLIEHLSV 133

Query: 139 RSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             G S+   G   +   +++     TT     L   L+     G     +E SSH L+Q 
Sbjct: 134 AVGRSTALFGTLVNRWPNYSVPATHTTAFADRLQAQLAQAVEAGAELGVMEVSSHALEQQ 193

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL--PKESPAIIYADDAYSKE 255
           R+ G +     FTNL +DH+DYH + +AYF AK +LF   L     + A++  D  +   
Sbjct: 194 RVAGCRFAGAVFTNLTQDHLDYHCSMEAYFEAKAQLFAPPLLESGSAKAVVNIDSPWGAR 253

Query: 256 VMKR----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +R       +      +      + + ++    +  Q  +     +  F  PL G F 
Sbjct: 254 LAQRLGDTCWRSSLAEGVLQQADAELKMTELTMSSDGVQGRLISPCGEGWFDSPLMGRFN 313

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSN 367
           + N L A G+ +  G+   L+L+ +     VPGR E V   +        + VDYAHT +
Sbjct: 314 LMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGRMERVLIPAADATQVPTVLVDYAHTPD 373

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            LE  LK  R  TS  +  VFGCGGDRD+GKR  M  IA  LAD  +VT DNPR+EDP++
Sbjct: 374 GLENALKASRPFTSKNLCCVFGCGGDRDRGKRSQMAAIAARLADRVVVTSDNPRTEDPQQ 433

Query: 428 IRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           I A+++ GIP       + +R  AI  AI      DV++VAGKGHE   I+    K    
Sbjct: 434 ILADVVAGIPEGTTCTVEVDRAVAIALAIAEAAPGDVVLVAGKGHEDYQILGTS-KVHFD 492

Query: 485 DCDIIREIL 493
           D +     L
Sbjct: 493 DREEAERAL 501


>gi|62261015|gb|AAX77953.1| unknown protein [synthetic construct]
          Length = 477

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 210/452 (46%), Gaps = 21/452 (4%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +FVA+ G   DG+ +I   +A+G   ++  S                +  + N ++ LS 
Sbjct: 27  VFVALKGLSTDGNKYIDSVLAKGVSLVLTDSH--------EFEDQKRVFYIQNLKEKLST 78

Query: 105 FASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRL 162
            A   Y    P+NI+ +TGT+GK+S++S++ Q    S   +  +G     I    +++  
Sbjct: 79  LAKWFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTH 138

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TT   + L K +SY  +     + +E SSH LDQ R++G+      F+NL  DH+DYH+T
Sbjct: 139 TTLDILSLYKTISYYKNYQN--LVMEVSSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKT 196

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              YF AK +LF+    +   AII  DD Y + +          V             K 
Sbjct: 197 MDNYFEAKAKLFQF--KRLKKAIINIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKS 254

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 +           ++   L G+F + N  ++      +       +  L  +  V
Sbjct: 255 IEGIKTKFEMFFNGRFVGEYTTKLIGDFNLMNLGLSFASLDGVL--DWDCILDLGNIKPV 312

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E +       +I +DYAHT ++LE  L+ + +     +  +FGCGG+RD  KRPIM
Sbjct: 313 KGRMEVI-ELDNDIKIVIDYAHTPDALEKALQTLNSYNPNNLWCIFGCGGNRDTSKRPIM 371

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQ 459
            +IA + A   ++T+DN R E  E I ++I  G       I   +R +AIR +IE  N+ 
Sbjct: 372 AQIAEEYASKIVITEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQG 431

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           D++++A KGHE      NG K+   + +II+ 
Sbjct: 432 DIILLASKGHECYLD-KNGAKEYFDEREIIKN 462


>gi|300213951|gb|ADJ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus salivarius CECT 5713]
          Length = 510

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 122/511 (23%), Positives = 204/511 (39%), Gaps = 47/511 (9%)

Query: 14  LINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGA 68
           L+++  +      E+K     V+ DSR +    +F         G+    ++  A+ +GA
Sbjct: 11  LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC------KGNFKPSYLTSALEKGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            A V    Y+          +   ++V N +K ++L  +  YG       I+A TGT GK
Sbjct: 65  TAYVSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGK 117

Query: 127 SSVASFVQQ-----ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           ++ A F +        ++  L S               + LTTP  + L   +    + G
Sbjct: 118 TTSAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNG 177

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +TH+ +E SS    ++R+ G+    G F N+  DHI  ++          +    +  K 
Sbjct: 178 MTHLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKR 237

Query: 242 SPAI---------------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                                  +       K A  +    + + YQ  F  L K     
Sbjct: 238 CVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEV 297

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                       D  +   +PG++   NA  A    +  G       + L+++H+ PGR 
Sbjct: 298 KGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRM 356

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T + G  IYVDYAH   SL+ +   ++  T  GR+I V G  GD+   +RP  GK 
Sbjct: 357 EIIKTKNNGT-IYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKA 415

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
             +  D  I+T D+P  EDP KI  EI   I         + +R  AI  AI+M    D+
Sbjct: 416 VSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDI 475

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +V+AGKG +    +   +     D ++ ++I
Sbjct: 476 VVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506


>gi|161526010|ref|YP_001581022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349273|ref|YP_001944901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|160343439|gb|ABX16525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia multivorans
           ATCC 17616]
 gi|189333295|dbj|BAG42365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
          Length = 513

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 145/473 (30%), Positives = 217/473 (45%), Gaps = 26/473 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++AG +FVA   +  D   FI  A+A+GA A++          +A +      
Sbjct: 31  LHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA----- 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V    +     AS  YG   +    + VTGT+GK+S   ++             IG  
Sbjct: 86  LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIAAALTALHQPCAIIGTL 145

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       F
Sbjct: 146 GSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAVF 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AHN 262
           TNL +DH+DYH+T +AY  AK +LF         A++  DDA  + ++++          
Sbjct: 206 TNLTQDHLDYHRTFEAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRTIAY 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                       + +    V A        +     D D      G F V N L   G  
Sbjct: 264 GIGDAQQAPDADRELVAIDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGAL 323

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI- 379
           +A  +     L  + +L  V GR + +G   +       +DYAHT ++LE  L  +R I 
Sbjct: 324 LAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 383

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               GR+I +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ G+ 
Sbjct: 384 VARGGRLICMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAGMT 443

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                    +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 444 APDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495


>gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 511

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 120/514 (23%), Positives = 202/514 (39%), Gaps = 26/514 (5%)

Query: 1   MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           M L  +I        F ELI         P +   R + ++S DSR ++ G +F    G 
Sbjct: 3   MTLSXIITVLKDXGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K D   ++  A  QGA   +  + YS Q    +   + P ++V + +K ++  +   +G 
Sbjct: 62  KFDP-KYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGF 119

Query: 113 HPEN--ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167
              N  ++  TGT GK++   F + +  +  G    Q+                LTTP  
Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L + +       + ++ +E SS    + R+ G+ L  G F N+  DHI   +     F
Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVE--HPSF 237

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              +    E++      ++  + +    + ++AH+ G +V+S G        +     H 
Sbjct: 238 EDYLACKSEIIDNCRILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHG 297

Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              VT +     K       +          +AA    A     +           VPGR
Sbjct: 298 YFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR 357

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            EF+     G    VDYAH   SL      ++     GR+IVV G  G + + +R  +G+
Sbjct: 358 MEFIKDKQ-GVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGR 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
                AD+AI+T ++   EDP +I A+I   I       I   +R  AI  A  M    D
Sbjct: 417 ALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGD 476

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            L +A KG ET       +     D  I ++++ 
Sbjct: 477 ALFMAAKGRETFMHEKGKDVPYQGDYQITKQLME 510


>gi|261366336|ref|ZP_05979219.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282571939|gb|EFB77474.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 493

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 138/508 (27%), Positives = 215/508 (42%), Gaps = 35/508 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+      L+   +   +Q        +  DSR +  G +FV + G   DGH + 
Sbjct: 1   MNLCELLQATDGVLLQGDARADVQT-------LCYDSRAVTPGALFVCLPGLHTDGHAYA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +A A GA  IV             +    P++ V ++R+ L+  A RLYG+      ++
Sbjct: 54  VRAAAAGAVGIVCERPIP------GLPEALPVIQVTHSRRALAQLAIRLYGEPARQLTMI 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT GK++ A  V  +   +G     IG        +      TTP    L + L  +
Sbjct: 108 GITGTKGKTTTAHLVAAVLTAAGRKVGLIGTNGVRWPGYRHPLDHTTPESSDLQQLLRRM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G     +E SS GL   R+ GI+   G FTNL  DHI      +    A+ R ++ +
Sbjct: 168 VDAGCDTCVMEVSSLGLKMDRVTGIEYDIGIFTNLSPDHIGP---GEHASFAEYRAWKSV 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-- 295
           L +     I   D    E +   H        +     +        +H    + ++   
Sbjct: 225 LFRRCRVGIVNADDPQTEAILTQHTCRVVTYGMDRPADWRAGTDFTLLHRPGLLGVTFTA 284

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              EG   ++   +PG F +YNAL A      + +     ++   +  VV GR E V   
Sbjct: 285 AGPEGGSREYQLAMPGRFSIYNALAAIAAAGILQL-PDTAVQTGLRTAVVEGRVEPVP-I 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + +DYAH   + E +L  +R     R+IVVFGCGG R + +R  MG+    LAD 
Sbjct: 343 HAPFTVVLDYAHNEAAAENLLTTLRAYRPTRLIVVFGCGGGRSRVRRFGMGEACARLADF 402

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            IVT+DN R E    I A+I  G+        F+E  +R +A+  A++M    D++ V G
Sbjct: 403 CIVTEDNSRGEPLADILADIRTGLRRGNPDTPFVEISDRRQALYDALDMARPGDIVAVIG 462

Query: 467 KGHETV-HIVTNGEKKMSVDCDIIREIL 493
           KGHET        E     + +IIR  +
Sbjct: 463 KGHETTLQ--RGSETIPFCEREIIRNYM 488


>gi|206561804|ref|YP_002232569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia J2315]
 gi|198037846|emb|CAR53790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Burkholderia cenocepacia J2315]
          Length = 512

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 148/472 (31%), Positives = 220/472 (46%), Gaps = 25/472 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R +QAG +FVA   +  D   F+  A+A+GA A++          +  +      
Sbjct: 31  LHADTRSLQAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPDGLTDAPAVPVA----- 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V    +     AS  YG   +++LAV  TGT+GK+S   ++             IG  
Sbjct: 86  LAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGTL 145

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            T +         TTP    L ++L+ L + G   V++E SSH L Q R++G       F
Sbjct: 146 GTGMPGQLVPTGFTTPDAPQLQRSLAQLRAAGAQAVAMEVSSHALHQGRVNGTAFDIAVF 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263
           TNL +DH+DYH T  AY  AK +LF         A++  DDA  + +++      R    
Sbjct: 206 TNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVLNRDDAAGRRLLEKLAGRVRTIAY 263

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G          + +    V A        +     D D      G F V N L   G  +
Sbjct: 264 GIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGSLL 323

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379
           A  +     L  +E+L  V GR + +G   +       +DYAHT ++L+  L  +R I  
Sbjct: 324 AADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALDKTLDALRPIAA 383

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  ++I G+  
Sbjct: 384 ARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVIAGMTA 443

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                   +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 444 PERARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 494


>gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. m3-13]
          Length = 418

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 129/432 (29%), Positives = 195/432 (45%), Gaps = 25/432 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ LI       ++            +I+ +  DSR +  G +F  I G   DGH F 
Sbjct: 1   MKLQQLIQYLHRYEVS-------SKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQFA 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            +A+ +GA AI+      +           P++VV +T + +++ A   + +      ++
Sbjct: 54  QEAVNKGAVAIISEKPLDVA---------VPVIVVPDTMRAMAILADVFFQQPTHKLHLI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++    ++ I Q     +  IG     I +     + TTP  + L  +   +
Sbjct: 105 GVTGTNGKTTTTHIIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQM 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V  V +E SSH L   R+ G       FTNL +DH+DYH+T + Y  AK  LF  L
Sbjct: 165 VENKVDTVVMEVSSHALHMGRVYGCDFDVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSSL 224

Query: 238 LPKESPAIIY----ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + A         D  + ++ KRA  A      +      I  K V          +
Sbjct: 225 GNSYNLAKPKYAVLNADDPASDIYKRATAAQVITYGINETS-DIRAKNVKTSAKGTTFDL 283

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + K       L G+F VYN L A        I    ++  +E +  VPGRFE      
Sbjct: 284 VYDNKVVPINLKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGVPGRFE-AIEAG 342

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           +   + VDYAHT +SLE +LK  + ++   I  + GCGGDRD+ KRP+M  +A++ A  A
Sbjct: 343 QDFTVIVDYAHTPDSLENVLKTTKQLSQNNIYCIVGCGGDRDRSKRPLMAAVAVNYASKA 402

Query: 414 IVTDDNPRSEDP 425
           I T DNPRSE+P
Sbjct: 403 IFTSDNPRSENP 414


>gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 491

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 132/485 (27%), Positives = 209/485 (43%), Gaps = 26/485 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  E  +  V+ ++   + G +FVA+ G + DGH FI QA  +GA A++           
Sbjct: 17  QTPEADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLGE------GLP 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSG 141
             +++  P L V + R  L+  A+ L+G       ++ VTGT GK++ +   + + + +G
Sbjct: 71  TGVQTTLPYLQVPDARAALADLAAELHGHPSRDLKVVGVTGTDGKTTTSWLTRHLLRAAG 130

Query: 142 LSSFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           L +  +                   TTP    L   L  L   G     +EASSH L  H
Sbjct: 131 LPTGLLSTAGYELPDGKLRQFPAHFTTPEAPQLQSILRELLQAGAQAAVLEASSHALALH 190

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ G+   A  +T+L R+H+D+H + + Y          L+     A++ ADD +++++ 
Sbjct: 191 RVRGVAWDAAIWTHLTREHLDFHGSVEGY----FADKRRLIEAAPFAVLNADDPWTEQLR 246

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             A          G         KV          +     +F    P+ G F V NAL 
Sbjct: 247 GVAPQEVTYSAEGG--AADWQADKVQQSGRGLSFRVHSPLGEFAAELPMIGAFNVANALA 304

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           A      +G  +  +   L     VPGR +   G      R+ VD+AHT  SLE  L+ +
Sbjct: 305 AMAAAAHLGATAEQLQAGLASFGGVPGRMQLVRGPAGPQPRVIVDFAHTPPSLEKALQTL 364

Query: 377 RTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           R+ T G++ VV G   G+RD  KR  +G++A   AD AI T+++ R    + I A +  G
Sbjct: 365 RSTTGGQLWVVIGSAGGNRDPLKRAPLGEVAGRCADQAIFTEEDHRETPLQDILAAMERG 424

Query: 436 I-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
                   F    +R EAIR A+      D +++AGKG E      + E     +     
Sbjct: 425 AREGGHSNFRSIPDRQEAIRYAVTQAQPGDTVLLAGKGPEDTLE-RDTETVPWNETREAE 483

Query: 491 EILGL 495
           E L L
Sbjct: 484 EALAL 488


>gi|171316202|ref|ZP_02905425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
 gi|171098616|gb|EDT43413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
          Length = 512

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 215/475 (45%), Gaps = 31/475 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R +QAG +F+   G   DG     FI  A+A GA A++          +  +   
Sbjct: 31  LHADTRSLQAGDVFL---GYAVDGADNRAFIADAVAGGAAAVLYQPEGLAAAPAMPVA-- 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              L V    +     AS  YG   ++   + VTGT+GK+S   ++             I
Sbjct: 86  ---LAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAVI 142

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   +           TTP    L ++L+ L+  G   V++E SSH L Q R++G     
Sbjct: 143 GTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLNEAGAKAVAMEVSSHALHQGRVNGTAFDI 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260
             FTNL +DH+DYH+T  AY  AK +LF         A++  DDA    +++      R 
Sbjct: 203 AVFTNLTQDHLDYHRTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGCRLLEKLAGRVRT 260

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G          + +    V A        +     D        G F V N L   G
Sbjct: 261 IAYGIGDAQGPDADRELVALDVRATATGTAFRLRSSWGDAHVEVGTLGAFNVSNLLAVLG 320

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378
             +A  +     +  + +L  V GR + +G   +       +DYAHT ++LE  L  +R 
Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 380

Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I G
Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVIAG 440

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 441 MTAPDHARRIEDRASAILQAVRGAVREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|221213282|ref|ZP_03586257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
 gi|221166734|gb|EED99205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
          Length = 513

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 144/473 (30%), Positives = 217/473 (45%), Gaps = 26/473 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++AG +FVA   +  D   FI  A+A+GA A++          +A +      
Sbjct: 31  LHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA----- 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V    +     AS  YG   +    + VTGT+GK+S   ++             IG  
Sbjct: 86  LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCTQWIAAALTALHQPCAIIGTL 145

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       F
Sbjct: 146 GSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAVF 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR-------AHN 262
           TNL +DH+DYH+T +AY  AK +LF         A++  DDA  + ++++          
Sbjct: 206 TNLTQDHLDYHRTFEAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRTIAY 263

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                       + +    V A        +     D D      G F V N L   G  
Sbjct: 264 GIGDAQQAPDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGAL 323

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI- 379
           +A  +     L  + +L  V GR + +G   +       +DYAHT ++LE  L  +R I 
Sbjct: 324 LAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 383

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ G+ 
Sbjct: 384 VARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAGMT 443

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                    +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 444 APDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495


>gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 507

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 137/483 (28%), Positives = 230/483 (47%), Gaps = 35/483 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ D++       +  L+      + R +  ++ +S  ++ G+IF+AI G+KEDG+++ 
Sbjct: 1   MKITDILK------MGHLNYSEPLNQSRNVKGITDNSNEVRPGYIFIAIKGHKEDGNIYT 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QAI  GA  I+    +             P L V N RK L   A + Y    +N  ++
Sbjct: 55  QQAILNGAILIIGEDDF--------TNLTVPYLKVKNARKTLGQVAKKFYKDPSKNKIMI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK+++  F++Q+ ++ G S   IG   + I+     +  TTP+   + +    L
Sbjct: 107 GITGTNGKTTIGFFIKQLLEKQGYSVSSIGTIYNEINGKRIQSVNTTPNAKTINQ---LL 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++     V +E SS GL Q+RL+GI+     F NL  DH+DYH T + YF  K  LFE+ 
Sbjct: 164 TASTDQVVVMEVSSQGLAQNRLEGIQFDYALFNNLQHDHLDYHGTMEEYFECKALLFEK- 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L  +  AII  +D + K++ +R    G +V++VG +                 V++  + 
Sbjct: 223 LKLDGTAIINYNDRWGKKLTERLTAQGKKVITVGEEPTNQV---QILAKELNNVSVRYKN 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K+++   PLPG   + N  +++ +   + +    V  ++ +   + GRFE          
Sbjct: 280 KEYNLRTPLPGVHNLENLTMSSCVAHELEVPYEQVTTYMSQFSGIAGRFEIFHLA-NKVT 338

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAHT ++L   +    +  + RII VFG  G+RD+ KR  M +    L+  AI+T 
Sbjct: 339 VVVDYAHTPDALATSINTAISNGAKRIITVFGFAGNRDESKRKAMLENVCRLSTYAILTV 398

Query: 418 --------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                   DN  S D   I+ E            +R  AI+ AI      D +++ GKGH
Sbjct: 399 TELFGSTIDNLYS-DYISIQKE-CQVEEKTSIIMDRTLAIQKAIWEAQSGDWVLLLGKGH 456

Query: 470 ETV 472
           E  
Sbjct: 457 EQY 459


>gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
 gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
          Length = 607

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 138/528 (26%), Positives = 233/528 (44%), Gaps = 47/528 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           L++ +     ++  Q +            ++  +S DSR ++   ++VA+ G K  G  F
Sbjct: 59  LREYLQGLGAQVSAQPASGVQGSESGESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQF 118

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPEN 116
              A+  GA AI+  +A +     A      P+LV +N R+++   A+ +YG       +
Sbjct: 119 AEAALKLGASAILTDAAGAQLLGEAP----VPVLVTENLREYVGPLAALIYGSASFPATH 174

Query: 117 ILAVTGTSGKSSVASFVQQICQRS-GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKAL 174
             AVTGT+GK++    ++ + +   G+ +  IG     I   +  +++TTP   ++   L
Sbjct: 175 RYAVTGTNGKTTSTYMLESVFRTGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLL 234

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + +    V   ++E SSH +D HR+DG+K     FTNL +DH+D H T + YF++K +LF
Sbjct: 235 TIMGQHQVRCAAMEVSSHAIDYHRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLF 294

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV---------------GYQGKFIHL 279
                +   A+I ADD + +++   A                          +  +   +
Sbjct: 295 TP--ERAELAVITADDEWGEKMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAV 352

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            KV       +  +     +    +         +    A L   +  DSA     L +L
Sbjct: 353 VKVQREGLGHRFHVDNGAGESVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPEL 412

Query: 340 -------HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
                   VVPGR + +          VD+AH  + L   L+ +     G++++VFG  G
Sbjct: 413 ASGSALTPVVPGRMQLISLAPH---AIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATG 469

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGN 444
           +RDQ KRPIMG IA   ADI +VTDD+P  E PE IRA +  G            +    
Sbjct: 470 ERDQLKRPIMGAIAAQYADIVVVTDDDPHGEAPEPIRAAVEEGAQKAENRRATQILNISP 529

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           R  AI  AI +  + D +++AG+GHET   V   +  +    +  R +
Sbjct: 530 RAAAIDAAIALAGEHDAILIAGRGHETEQDVDGVDIALDDRVETARAL 577


>gi|221202509|ref|ZP_03575539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
 gi|221208169|ref|ZP_03581174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221172072|gb|EEE04514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221177604|gb|EEE10021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
          Length = 513

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 145/474 (30%), Positives = 216/474 (45%), Gaps = 28/474 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++AG +FVA   +  D   FI  A+A+GA A++          +A +      
Sbjct: 31  LHADTRSLRAGDVFVAYAVDGADNRAFIADALARGAAAVLYQPEGLAATPNAPVA----- 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           L V    +     AS  YG   +    + VTGT+GK+S + ++             IG  
Sbjct: 86  LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSCSQWIAAALTALHQPCAIIGTL 145

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       F
Sbjct: 146 GSGMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVAMEVSSHALHQGRVNGTAFDIAVF 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH+T +AY  AK +LF     +   A +   D  +   +        R ++
Sbjct: 206 TNLTQDHLDYHRTFEAYEAAKAKLFAW---RGLRAAVVNRDDAAGRRLLEKLAGRVRTIA 262

Query: 270 VGYQGKFIHLK--------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            G       L          V A        +     D D      G F V N L   G 
Sbjct: 263 YGIGDTQQALDADRELVALDVRATATGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGA 322

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI 379
            +A  +     L  + +L  V GR + +G   +       +DYAHT ++LE  L  +R I
Sbjct: 323 LLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPI 382

Query: 380 ---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ G+
Sbjct: 383 AVARGGRLVCMFGCGGDRDATKRPLMGAIAERLADDVVVTSDNPRSEDPQAIIDQIVAGM 442

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                     +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 443 TAPDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 495


>gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
 gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 161/348 (46%), Positives = 212/348 (60%), Gaps = 1/348 (0%)

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G     +       LT+P     A+ L+ L+ + VTH+++EASSHG+DQ RLDG+ + 
Sbjct: 6   VVGQKGDKTYALTGPGLTSPDAAEAARLLAELARKEVTHLALEASSHGIDQRRLDGVAIK 65

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A  FTNL +DH+DYH T   Y  AKMRLFE LLP+   A++ AD          +  AG 
Sbjct: 66  AAGFTNLTQDHLDYHGTMDEYRAAKMRLFEALLPRGRTAVLNADSDAYSAFASASIMAGL 125

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V+ VG +G+ + L    A    Q++T+ V G+  D L PL G FQ  NALVAAGLCIA 
Sbjct: 126 GVMGVGERGRDLTLLARRATPEGQRLTLDVRGRLHDVLLPLAGAFQASNALVAAGLCIAG 185

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G D   V+  LE +    GR + +   +RGG +YVDYAHT + LE +L  +R   +GR+I
Sbjct: 186 GEDPDRVIPALELIQGAQGRLQRIPGGARGGEVYVDYAHTPDGLETVLNALRPHATGRLI 245

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VVFG GGDRD+ KRP+MG+IA  LAD AIVTDDNPRSEDP  IRA++  G P  +E G+R
Sbjct: 246 VVFGAGGDRDRAKRPLMGEIAGRLADTAIVTDDNPRSEDPAAIRAQVRAGCPDSLEIGDR 305

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            EAIR A+ ++ + DV+V+AGKGHE   IV  G      D     E L
Sbjct: 306 REAIRHAVSLMREGDVVVIAGKGHEQGQIVG-GVVHPFDDAAEATEAL 352


>gi|90961006|ref|YP_534922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius UCC118]
 gi|122449508|sp|Q1WVQ8|MURE_LACS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|90820200|gb|ABD98839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus salivarius UCC118]
          Length = 510

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 122/511 (23%), Positives = 204/511 (39%), Gaps = 47/511 (9%)

Query: 14  LINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGA 68
           L+++  +      E+K     V+ DSR +    +F         G+    ++  A+ +GA
Sbjct: 11  LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC------KGNFKPSYLTSALEKGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            A V    Y+          +   ++V N +K ++L  +  YG       I+A TGT GK
Sbjct: 65  TAYVSEQKYAE-------GMDATGIIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGK 117

Query: 127 SSVASFVQQ-----ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           ++ A F +        ++  L S               + LTTP  + L   +    + G
Sbjct: 118 TTSAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNG 177

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +TH+ +E SS    ++R+ G+    G F N+  DHI  ++          +    +  K 
Sbjct: 178 MTHLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKR 237

Query: 242 SPAI---------------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                                  +       K A  +    + + YQ  F  L K     
Sbjct: 238 CVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEV 297

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                       D  +   +PG++   NA  A    +  G       + L+++H+ PGR 
Sbjct: 298 KGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRM 356

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T + G  IYVDYAH   SL+ +   ++  T  GR+I V G  GD+   +RP  GK 
Sbjct: 357 EIIKTKNNGT-IYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKA 415

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
             +  D  I+T D+P  EDP KI  EI   I         + +R  AI  AI+M    D+
Sbjct: 416 VSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREIAIEKAIKMSTNNDI 475

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +V+AGKG +    +   +     D ++ ++I
Sbjct: 476 VVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506


>gi|313680446|ref|YP_004058185.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
 gi|313153161|gb|ADR37012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
          Length = 477

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 136/510 (26%), Positives = 219/510 (42%), Gaps = 49/510 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L              F +   + ++  V+ DSR ++ G+++VA+ G + DGH F 
Sbjct: 1   MTLRELFA-----------PFGLAAPDVEVRGVTHDSRRVEPGFVYVALPGRRFDGHAF- 48

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLSLFASRLYGKHPENIL 118
                    A  V+        +  +    P L +  T  R  L+  A+  +G+  E + 
Sbjct: 49  --------VADAVARGAVAVAGARALSPGVPYLRLPETELRPALARLAAEFHGRPSEKLW 100

Query: 119 AVTGTSGKSSVASFV--QQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKA 173
               T       +      +   SG  +  IG             +   TTP    +   
Sbjct: 101 VAGVTGTDGKTTTTFLLHHLLASSGRRTGMIGTVGYDAGAGLAFPEGHFTTPEAPEVQGL 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ +   G+TH  +EASSH L QHRLD +      +T+L  +H+D+H   + YF AK  L
Sbjct: 161 LARMVEGGLTHAVLEASSHALAQHRLDAVDFDLAVWTHLSPEHLDFHGDMEGYFRAKALL 220

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + +   A++     Y+  ++ R H +          G    L +V           
Sbjct: 221 ----VERARLAVLNTACPYAMRLVHRPHLSYGP-------GGEFELLEVHEEAAGLAFAF 269

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +     F+   P+ G +   NAL A       G+        L +   VPGR + V T  
Sbjct: 270 ASPEGRFETRLPMLGRYNAENALAALAAAYTAGVSPERAAAELPRFAGVPGRMQIVRTE- 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              R+ VD+AHT   L   L  +R  T GR++VV G  G+RD GKR  +G+ A++LAD+A
Sbjct: 329 -PFRVVVDFAHTPKGLAATLSALRPTTEGRLVVVVGSAGERDPGKRAPLGRTAVELADLA 387

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + T+++ RSE  E+I AE+  G           ++ + +R  AI  A E+    D +V+A
Sbjct: 388 VFTEEDSRSEPVEEILAELARGAEEASGREGKDYLLEPDRGRAIALAFELARPDDTVVLA 447

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           GKGHE      N E     +  + R++LGL
Sbjct: 448 GKGHERTLEREN-ETLPWNEAALARKLLGL 476


>gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
 gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
          Length = 581

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 136/506 (26%), Positives = 225/506 (44%), Gaps = 44/506 (8%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
                  ++  +S DSR ++   ++VA+ G K  G  F   A+  GA AI+  +A +   
Sbjct: 55  SESGESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILTDAAGAQLL 114

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGK---HPENILAVTGTSGKSSVASFVQQICQ 138
             A      P+LV +N R+++   A+ +YG       +  AVTGT+GK++    ++ + +
Sbjct: 115 GEAP----VPVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLESVFR 170

Query: 139 RS-GLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G+ +  IG     I   +  +++TTP   ++   L+ +    V   ++E SSH +D 
Sbjct: 171 TGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSHAIDY 230

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+DG+K     FTNL +DH+D H T + YF +K +LF     +   A+I ADD + +++
Sbjct: 231 HRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFESKAQLFTP--ERAELAVITADDEWGEKM 288

Query: 257 MKRAHNAGCRVLSV---------------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              A                          +  +   + KV       +  ++    +  
Sbjct: 289 FSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVANGVGESV 348

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-------HVVPGRFEFVGTNSR 354
             +         +    A L   +  DSA     L +L        VVPGR + +     
Sbjct: 349 ECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLISLAPH 408

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VD+AH  + L   L+ +     G++++VFG  G+RDQ KRPIMG IA   ADI +
Sbjct: 409 ---AIVDFAHNPDGLTRALEAMDRPGDGKVMIVFGATGERDQLKRPIMGAIAAQYADIVV 465

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           VTDD+P  E PE IRA +  G            +    R  AI  AI +  + D +++AG
Sbjct: 466 VTDDDPHGEAPEPIRAAVEEGAQKAENRRATQILNISPRAAAIDAAIALAGEHDAILIAG 525

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           +GHET   V   +  +    +  R +
Sbjct: 526 RGHETEQDVDGVDIALDDRVETARAL 551


>gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 489

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 125/496 (25%), Positives = 219/496 (44%), Gaps = 25/496 (5%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+ K   ELI    +         I  +++DSR +  G +++ + G   DGH +  +A+
Sbjct: 2   NLLDKHLSELIAPFHLTCE--VNPSITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAV 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA AI+        +         P++++ +T+      A   Y      +     T 
Sbjct: 60  ANGAVAILAEEPIDGVE--------VPVVLLQDTKHAAGKVADLFYDHPSHKLKVYGITG 111

Query: 125 GKSSVASFVQQI--CQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQG 181
                 +        + +G  +  I     +      D   TTP  I L + L  +  QG
Sbjct: 112 TNGKTTTTKLTYDLFRAAGQKAGMISTIGAMIDGEMIDTPNTTPEAIILHRLLYQMVEQG 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           VT   +E SSH L + R++G+K  A +FTNL  DH+DYH + + Y  AK  +F+++    
Sbjct: 172 VTDCVLEVSSHALMEGRVEGVKFHAAAFTNLTHDHLDYHASMEEYAQAKALVFKQVATSG 231

Query: 242 SPAII-YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
             A+I    D  S+ + K A        +     +      +     ++ V++ ++G   
Sbjct: 232 GQAVILNEADPKSRVMEKAAEGVPVIWYATKALSEAP----ITVEWKEETVSVRIDGTVT 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G+F   N   A GL  A  ++   ++ H+ +L +  GR E +     G  +Y+
Sbjct: 288 EVPVFLLGDFNAANLAAAIGLMQAGNVNMYQLIRHIPELRLPKGRLEQIPFE--GCEVYI 345

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DYAHT + LE  LK + ++    + +V    G+RD+ KR +MG+IA    +  IVT  +P
Sbjct: 346 DYAHTPDGLEKCLKAL-SVPGEPLYMVLSAAGERDRSKRAVMGRIAGQYCEGIIVTVHDP 404

Query: 421 RSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           R E P++I  E++  IP         +R EA++ A ++      +V+ GKGHE    +  
Sbjct: 405 RREQPQQIIKELLVEIPPRKIITCHESRKEALQIAAKVALTGKRMVIVGKGHERFEQIGT 464

Query: 478 GEKKMSVDCDIIREIL 493
                  +  I+ + L
Sbjct: 465 EHV-PFDEVKILTDEL 479


>gi|301299515|ref|ZP_07205788.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852905|gb|EFK80516.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 510

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 122/511 (23%), Positives = 204/511 (39%), Gaps = 47/511 (9%)

Query: 14  LINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGA 68
           L+++  +      E+K     V+ DSR +    +F         G+    ++  A+ +GA
Sbjct: 11  LLDEHHLLKEVVNEQKLTFENVTYDSRKVSDNTLFFC------KGNFKPSYLTSALEKGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGK 126
            A V    Y+          +   ++V N +K ++L  +  YG       I+A TGT GK
Sbjct: 65  TAYVSEQKYAE-------GMDATGIIVTNVQKAMALLGAVFYGFPQNELFIIAYTGTKGK 117

Query: 127 SSVASFVQQ-----ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           ++ A F +        ++  L S               + LTTP  + L   +    + G
Sbjct: 118 TTSAYFAEHILAKATDKKVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNG 177

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +TH+ +E SS    ++R+ G+    G F N+  DHI  ++          +    +  K 
Sbjct: 178 MTHLVMEVSSQAYKKNRVYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKR 237

Query: 242 SPAI---------------IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                                  +       K A  +    + + YQ  F  L K     
Sbjct: 238 CVINGETAYLRDVYYTAKATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEV 297

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                       D  +   +PG++   NA  A    +  G       + L+++H+ PGR 
Sbjct: 298 KGLSDKAQTLHVDGKYELSVPGDYNEGNATSAIIATLLAGAKGEDARKTLDRVHI-PGRM 356

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI 405
           E + T + G  IYVDYAH   SL+ +   ++  T  GR+I V G  GD+   +RP  GK 
Sbjct: 357 EIIKTKNNGT-IYVDYAHNYASLKALFAFLKQQTHAGRVIAVLGSPGDKGISRRPGFGKA 415

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
             +  D  I+T D+P  EDP KI  EI   I         + +R  AI  AI+M    D+
Sbjct: 416 VSEEVDHVILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDI 475

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +V+AGKG +    +   +     D ++ ++I
Sbjct: 476 VVLAGKGEDPYQKIKGVDVPYPSDVNVAKKI 506


>gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
 gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
          Length = 481

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 119/497 (23%), Positives = 205/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ KD  F E+I+  +     +     + +S DSR  +   +F A  G       ++  
Sbjct: 9   NILKKDGLFREIIDHENYL-YNYTNVTFDSISYDSRKAKENCLFFA-KGAAFK-EEYLVS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI+QG    V    Y +           P++VV+N +K +SL A   YG   +   ILA 
Sbjct: 66  AISQGLGWYVAEKDYQV---------GIPVIVVNNIKKAMSLIAMVFYGNPQKKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+        +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYQTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NNRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++   D     ++K                    +K   A        ++ +   
Sbjct: 234 ENSRAVVVNSDMDHFNLLKEEVEQKEHDFYGSQSDN--QIKNSKAFRFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     + + + +   VPGR E +   + G ++ 
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIQKGIAE-TRVPGRMEVLTQKN-GAKVI 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL  ++  +    +G I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLTKLISVVEEHHTGNIALVLGSTGNKGESRRKDFGLLLNKHPEIQVFLTTD 404

Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+TA+ +     D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPRAIADEISSYIEHPVKTIIDREEAIKTAMSITSQPLDAVILAGKGADCYQIIN 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +++   D  I +  L
Sbjct: 465 GVKEEYPGDAAIAKRYL 481


>gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
 gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
          Length = 527

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 147/481 (30%), Positives = 224/481 (46%), Gaps = 27/481 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+  ++H+  G +F A+ G +  G  F  +A+ +GA A++     + +        +
Sbjct: 58  VTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGAVAVLTDEDGASR----PELRD 113

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LV  + R  L   ++R+YG+ P   +A+ G +G S   +    I           G 
Sbjct: 114 VPVLVHRDPRAALGALSARVYGE-PAQRVALWGVTGTSGKTTTSYMIESCLRAEGRVTGL 172

Query: 150 TSTISSFAQDNRL----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             T+ +     RL    TTP    L   L+ +  +GV    +E SSH L   R+ G    
Sbjct: 173 VGTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEVSSHALRLGRVGGAGFA 232

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G+FTNL +DH+D+H   + YF AK  LF+    +E       D  + + ++K       
Sbjct: 233 VGAFTNLSQDHLDFHPDMEDYFQAKAELFDGRARREVV---CVDGEWGRRLVKPGTVTVS 289

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
               VG         +V A   +       +G +      LPG+F V NAL+A G   A 
Sbjct: 290 ATAPVGGATWTASGVRVSATGEQTFTAHGPDGLELAVALRLPGDFNVANALLAIGCLHAS 349

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +  ++  L ++ V PGR + V          VDY+H   ++ + L  +R   +GR+I
Sbjct: 350 GVGAEAIVRGLAEVQV-PGRMQRVDVGQ-DFTAVVDYSHKPAAVVLALDAVRARATGRVI 407

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------P 437
            V GCGGDRD  KRP+MG  A   +++ +VTDDNPRSEDP  IRA ++ G          
Sbjct: 408 TVLGCGGDRDTAKRPLMGAEAARRSEVLVVTDDNPRSEDPAAIRAAVLAGALEVPEAERG 467

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD----IIREIL 493
             +E G+R  AI  A+ +    DV+VVAGKGHET   V  G      D D     I+E L
Sbjct: 468 EVVEIGDRGAAIAHAVSLAVAGDVVVVAGKGHETGQEVA-GVVHPFSDVDALTGAIQEAL 526

Query: 494 G 494
            
Sbjct: 527 R 527


>gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 511

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 120/514 (23%), Positives = 202/514 (39%), Gaps = 26/514 (5%)

Query: 1   MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           M L  +I        F ELI         P +   R + ++S DSR ++ G +F    G 
Sbjct: 3   MTLSGIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K D   ++  A  QGA   +  + YS Q    +   + P ++V + +K ++  +   +G 
Sbjct: 62  KFDP-KYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGY 119

Query: 113 HPEN--ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167
              N  ++  TGT GK++   F + +  +  G    Q+                LTTP  
Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L + +       + ++ +E SS    + R+ G+ L  G F N+  DHI   +     F
Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVE--HPSF 237

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              +    E++      ++  + +    + ++AH+ G +V+S G        +     H 
Sbjct: 238 EDYLACKSEIIDNCRILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHG 297

Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              VT +     K       +          +AA    A     +           VPGR
Sbjct: 298 YFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVTAQVAPVSEDFRAGLAETTVPGR 357

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            EF+     G    VDYAH   SL      ++     GR+IVV G  G + + +R  +G+
Sbjct: 358 MEFIKDKQ-GVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGR 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
                AD+AI+T ++   EDP +I A+I   I       I   +R  AI  A  M    D
Sbjct: 417 ALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGD 476

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            L +A KG ET       +     D  I ++++ 
Sbjct: 477 ALFMAAKGRETFMHEKGKDVPYQGDYQITKQLME 510


>gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 511

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 120/514 (23%), Positives = 202/514 (39%), Gaps = 26/514 (5%)

Query: 1   MKLQDLI-----YKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           M L  +I        F ELI         P +   R + ++S DSR ++ G +F    G 
Sbjct: 3   MTLSGIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGL 61

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           K D   ++  A  QGA   +  + YS Q    +   + P ++V + +K ++  +   +G 
Sbjct: 62  KFDP-KYLTMAANQGASVAMAPADYSAQ-LKTSEHPDLPQVIVTDIQKAMATVSRAFFGY 119

Query: 113 HPEN--ILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167
              N  ++  TGT GK++   F + +  +  G    Q+                LTTP  
Sbjct: 120 PDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPES 179

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L + +       + ++ +E SS    + R+ G+ L  G F N+  DHI   +     F
Sbjct: 180 LDLFRMMKEAVDNQMKYLVMEVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVE--HPSF 237

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              +    E++      ++  + +    + ++AH+ G +V+S G        +     H 
Sbjct: 238 EDYLACKSEIIDNCRILVVNRECSQYDYLAEKAHDLGKQVISFGSDQSAADYQYRLGEHG 297

Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              VT +     K       +          +AA    A     +           VPGR
Sbjct: 298 YFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR 357

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            EF+     G    VDYAH   SL      ++     GR+IVV G  G + + +R  +G+
Sbjct: 358 MEFIKDKQ-GVVACVDYAHNYLSLTASFNFMKHEFKDGRLIVVIGAAGGKAESRRKDIGR 416

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD 460
                AD+AI+T ++   EDP +I A+I   I       I   +R  AI  A  M    D
Sbjct: 417 ALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGD 476

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            L +A KG ET       +     D  I ++++ 
Sbjct: 477 ALFMAAKGRETFMHEKGKDVPYQGDYQITKQLME 510


>gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 516

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 132/504 (26%), Positives = 219/504 (43%), Gaps = 33/504 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             + +      P      ++     D+R ++ G +F+A+ G    G  F P AI++GA+A
Sbjct: 25  IADAVGGTRHGPAG----QVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKA 80

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++  +A              P++ V +        A+  +G       +  VTGT+GK++
Sbjct: 81  VLTDAAG----LDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGVTGTNGKTT 136

Query: 129 VASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               ++ +  R G  +  +G     I   +  + +TTP    +    +   +  +  + +
Sbjct: 137 TTYLLRHLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVL 196

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+D ++     F NL  DH+D+H + + YF  K  LF E        I  
Sbjct: 197 EVSSHALGLGRVDPLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFTERRSDRQVII-- 254

Query: 248 ADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            DD + + + ++    G        + G+   +                 + +GK     
Sbjct: 255 VDDDWGRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQ 314

Query: 304 FPLPGEFQVYNALVAAGLC--------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +PG F   N  +A  +           +  D    L        VPGR E +    R 
Sbjct: 315 VLMPGRFNAVNTALAIVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPR- 373

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             + VD+AH   +L+ +L+ +R  T+GR+ +VFG  G RD  KRPI+G+IA +LAD   +
Sbjct: 374 --VIVDFAHNPGALKSLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIAGELADFTYL 431

Query: 416 TDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           TDD+P  EDP KIRAE+  G+      ++E   R  AI+ AI+    QD +V+AG+GHET
Sbjct: 432 TDDDPHEEDPGKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQDAKPQDTVVIAGRGHET 491

Query: 472 VHIVTNGEKKMSVDCDIIREILGL 495
           +     G   +  D    R  L L
Sbjct: 492 LQETPVGAIDL-DDRVEARAALQL 514


>gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
 gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
          Length = 459

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 221/474 (46%), Gaps = 31/474 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  +S  ++ I    +FVA+ G++ DG  +     ++G   ++               
Sbjct: 10  TELTALSDRAQEIGRDGLFVALRGDRADGRQWADAVRSRG-GYVLSDQPGERT------- 61

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                +V  + R    L     Y        ++ VTGT+GKS+V   +  +   +G    
Sbjct: 62  -----IVHPDPRAVYPLLLQAYYDYPALKLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCC 116

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     I    + +  TTP P+ L + L     +G+  V +E SS  L  HR+DG+  
Sbjct: 117 LIGTGRIVIGDEVRFSPNTTPDPLTLTRLLDEAVRRGIDTVIMEVSSQALAMHRVDGLLF 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL +DH+DYH+T +AY  AK  LFE+ L ++  AI+  DD  ++  + + H   
Sbjct: 177 DLAVLTNLKQDHLDYHKTLKAYQRAKFMLFEK-LKEKGTAILNQDDPVTQRWLSQLHR-- 233

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V + G       +  V    +     ++    +     PL G F + N   A     A
Sbjct: 234 -PVFTYGRDSVNFRIHPVAETLDSITFDLNGHRVE----APLAGAFNMRNLTAALACGFA 288

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           + I  A +LE      +  GR E V    +     VDYAHT+++LE +LK+ R +   R 
Sbjct: 289 LDIPWAAMLEFAHHAALPEGRMEIVCR--QPVLAVVDYAHTASALEAMLKHWRKVADQRH 346

Query: 385 I---VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI- 440
               VVFGCGGDR+  KRP+MG+IA   AD  ++ DDNPR+EDP++I A+I  G  G   
Sbjct: 347 TRLSVVFGCGGDREADKRPLMGRIACAYADQVVLCDDNPRTEDPDRILAQIAAGCDGSQK 406

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              +R EAI+  ++     D++VVAGKG ET  ++ +  K    D  +I    G
Sbjct: 407 IIRDRAEAIKFVLDGAQTDDIIVVAGKGGETS-LIQDTAKTCPNDRLLIERYFG 459


>gi|134294642|ref|YP_001118377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
 gi|134137799|gb|ABO53542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
          Length = 512

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 141/475 (29%), Positives = 217/475 (45%), Gaps = 31/475 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R +QAG +F+   G   DG     FI  A+A+GA A++          +  +   
Sbjct: 31  LHADTRSLQAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVAFA 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P        +     AS  YG   +    + VTGT+GK+S   ++             I
Sbjct: 88  VP-----GLDQLAGEIASGWYGDPSDALLAIGVTGTNGKTSCTQWIAAALTALHQPCALI 142

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 143 GTLGSGMPGQLVPTGFTTPDAPQLQRSLARLRDAGAKAVAMEVSSHALHQGRVNGTAFDI 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260
             FTNL +DH+DYH+T  AY  AK +LF         A++  DDA  + +++      R 
Sbjct: 203 AVFTNLTQDHLDYHRTFDAYEAAKAKLFTW--RGLRAAVVNRDDAAGRRLLEKLAGRVRT 260

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G          + +    V A        +     + D      G F V N L   G
Sbjct: 261 IAYGIGDAPSAGADRELVATDVRATAAGTAFRLRSSWGEADVEVGTLGTFNVSNLLAVLG 320

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378
             +A  +     +  + +L  V GR + +G   +       +DYAHT ++L+  L+ +R 
Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRPQNDEPLVVIDYAHTPDALDKTLEALRP 380

Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  +I+ G
Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQIVAG 440

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+++AGKGHE    +  G+K+   D D
Sbjct: 441 MTAPDRARRIEDRASAILQAVRGAAREDVVLLAGKGHEATQEIM-GKKRTFSDQD 494


>gi|149183982|ref|ZP_01862354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848308|gb|EDL62586.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 413

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 109/407 (26%), Positives = 191/407 (46%), Gaps = 13/407 (3%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            ++VV +T K ++   ++ Y      +  + VTGT+GK++V + +  I +  G  S   G
Sbjct: 2   ALVVVKDTFKAMAQLVNKYYDYPSLKMNVIGVTGTNGKTTVTNLIHSILRNDGQRSALSG 61

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                       +  TT   +   + +     + + ++ +E SSHGL   RL G+     
Sbjct: 62  TIGFDLDGELFPSENTTCDVMTNQEMIQKALDRDIENMVLEVSSHGLSLGRLWGVDFDVV 121

Query: 208 SFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +FTNL  DH+DYHQT + Y  AK        + L     A++ +DD + +       +  
Sbjct: 122 TFTNLSHDHLDYHQTMEHYGYAKGLLFSQLGQNLANPKYAVLNSDDEWYERYSTMTAHEV 181

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                  Y       + +   ++    T+      F+    L G+F VYN L A     A
Sbjct: 182 ISYGLETYADF--KAENIQYYNDLTTFTLQSPEGVFEVESKLLGKFNVYNILAAMATLFA 239

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    ++  ++ L  V GR E V  +     +Y+DYAHT +++E  ++++      +I
Sbjct: 240 KGMSVEKLVTIIKDLPPVSGRMEKVH-SDAPLSMYIDYAHTPDAIENAIQSVLPFKENKI 298

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEK 442
           I + G GG+RD+ KRP M + A  +AD  ++T D+PR E  + I  ++  G+    +   
Sbjct: 299 IFLVGTGGNRDKSKRPSMAEKAS-IADYVVLTTDDPRYESYDSIVNDLGKGMRHGNYALI 357

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           G+R EA++ A+++    D+++ AGKGHE   I+ N  K    D +I 
Sbjct: 358 GDREEAVKHAVDVSEPGDIIIFAGKGHEDYQIIEN-TKYPHSDKEIA 403


>gi|332687175|ref|YP_004456949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371184|dbj|BAK22140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 510

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 207/505 (40%), Gaps = 28/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F          P  + ++ ++ +S +S+ I    +F    G       ++  A
Sbjct: 14  KEQLLKEFVTKDAWTFRLPNAFNKQFVDHLSYNSQDITKNTLFFC-KGLNFK-KDYLVDA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVT 121
           +  G    +    Y +             ++V + +K +++ +   Y        ++  T
Sbjct: 72  VQNGLSIYISEQPYDVPADLG--------IIVSDVKKAMAILSMAFYNYPQNKLKVIGFT 123

Query: 122 GTSGKSSVASFVQQ--ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F +        G ++      ST        ++LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFAKSILTNATKGKTAMLSTMCSTLDGKTFFKSKLTTPESLDLYRMMNEAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +TH  +E SS      R+  +    G F N+  DHI   +     F+       +++
Sbjct: 184 QNNMTHFVMEVSSQAYKIDRVYQLFYDVGIFLNITPDHISPIE--HPTFDDYFYCKRQII 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-----GKFIHLKKVCAIHNKQQVTI 293
                 I+  +  Y + + + A       +  G Q       +   K   ++        
Sbjct: 242 AHSKQIILNRETDYFQLLKETADYFNVPTIVYGNQPTTEVDYWYQKKSQDSLAFTIVAEK 301

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  D+   L G+F   NAL A      +G +       + +  +VPGR E +  N 
Sbjct: 302 DFLFISGDYQLHLAGDFNKSNALSAVIASSLLGANKKDCQTGINE-TIVPGRMELLK-NK 359

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
              ++Y+DYAH  +SL  +L  ++    +GR+IVV G  G++   +R   G +    ADI
Sbjct: 360 NNAQVYIDYAHNYDSLYHLLSFVKQDHKNGRVIVVIGSTGNKGISRRKDFGAVLSKFADI 419

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           AI+T D+P  EDP+ I  EI + I   +      +R +AI+ A+EM    D +V+AGKG 
Sbjct: 420 AILTMDDPADEDPKAICQEIANSITTNVTSFITVDRKKAIQQALEMSQPADAVVLAGKGA 479

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    +   +     D +I +E++ 
Sbjct: 480 DLYQKIKGEDIPYEGDSNIAKELIN 504


>gi|73542668|ref|YP_297188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
 gi|72120081|gb|AAZ62344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
          Length = 520

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 157/487 (32%), Positives = 223/487 (45%), Gaps = 31/487 (6%)

Query: 33  VSSDSRHIQAGWIFVAIV-GN---KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++ D+R +  G +F+A V GN     DG   I QAIA GA AI+  +      F  T   
Sbjct: 32  LTGDTRRLARGDVFLAYVLGNERLSTDGRPHIAQAIAAGAGAILYEADG----FDWTFGD 87

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P L +++  +     A+  YG       +  +TGT+GK+S + ++ ++ Q +G     
Sbjct: 88  TVPHLALNSLHQLAGPIAAGWYGNPARGVAVTGMTGTNGKTSCSQWLARLLQATGTPCAT 147

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T      Q    TTP  + L  +L+ L   G   V++E SSHGL+Q R+ G    
Sbjct: 148 IGTLGTGFPDALQPTGFTTPDAVQLQASLASLHDAGARAVAMEVSSHGLEQERVAGTHFS 207

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS-----------K 254
               TNL +DH+DYH T   Y  AK RLF     + +                       
Sbjct: 208 VAVLTNLTQDHLDYHGTMAEYEAAKARLFRWDGLRTAVINRDDGMGRRLLASNGAAIAAP 267

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V++   +   R    G +G+++    V A        I       D   P+ G F V N
Sbjct: 268 HVIEYGIDGPARASISGARGQWLRASGVRATATGTAFHIDGSFGSADVATPMIGAFNVSN 327

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN--SRGGRIYVDYAHTSNSLEMI 372
            L   G  +A G+     L  L  L  V GR E  G +    G    VDYAHT ++LE  
Sbjct: 328 LLAVLGAALANGVAWDAALAALRALSPVDGRMELFGAHAGQDGPLAVVDYAHTPDALEKT 387

Query: 373 LKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L+ +R +    +GR+  VFGCGGDRD  KRP+MG +A  LAD  ++T DNPRSEDP+ I 
Sbjct: 388 LEALRPVAQARNGRLWCVFGCGGDRDPIKRPLMGGVAERLADEIVLTSDNPRSEDPQDIL 447

Query: 430 AEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
             I  G+          +R  AI  AI+     DV++VAGKGHE      +G K+   D 
Sbjct: 448 DAIADGMADRARGRQIEDRAAAILYAIKHAAGADVVLVAGKGHEATQE-AHGRKRPFSDR 506

Query: 487 DIIREIL 493
           + +R  L
Sbjct: 507 EHVRLAL 513


>gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
 gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
          Length = 509

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 133/507 (26%), Positives = 214/507 (42%), Gaps = 27/507 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +  K    L+N +++  +       +  ++ DSR ++ G +FVAI G   DGH FI QAI
Sbjct: 1   MTAKTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA A+VV   Y  +   A            ++R  L+  A+  Y  +P   L   G +
Sbjct: 61  ARGAVAVVVDQRYWDERPVAVPVVVVA-----DSRVALAPLAAAFYD-YPGRELTTIGIT 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST------ISSFAQDNRLTTPSPIYLAKALSYLS 178
           G    ++      Q    +   +G  ST         +  D R +TP    +   L  + 
Sbjct: 115 GTKGKSTTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMV 174

Query: 179 SQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF--NAKMRLF 234
           + G     +EA+SH L     RL G         N+G +H+DYH T + Y    A++   
Sbjct: 175 TAGCDTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFAL 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                    AI+ ADD      +  A     R+    ++   +  + + +      V ++
Sbjct: 235 LGERSGSRWAIVNADDPNHAYFLDAAPADAVRLRYGLHEPADVQGQILHSGPMSSVVRVT 294

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D   PLPG F   NAL A  + ++ G+        L  +    GR        +
Sbjct: 295 SPWGTTDLTVPLPGRFNASNALAALTVALSQGVALEAAAAALAGVRAPRGRM-VPIDAGQ 353

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VDYAH  +S E I   +R    GR+I VFG  G+RD  KR I G+IA  + D+ +
Sbjct: 354 PFAVIVDYAHNPDSFEQIFAMLRPQVQGRMIAVFGSAGERDVAKRAIQGEIAGRMCDLLV 413

Query: 415 VTDDNPRSEDPEKIR--------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +TD++PR ED E I                 G++   +R +AIR A+      D++++ G
Sbjct: 414 LTDEDPRGEDREAIIAQIAAGAERAGKRPGSGYLCIPDRAQAIRAAMAAAQPGDLVLLLG 473

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KGHE   I  +     + + +  R+ L
Sbjct: 474 KGHEGSIIYADFSLPWNEERE-ARQAL 499


>gi|145641282|ref|ZP_01796862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274119|gb|EDK13985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 393

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 123/395 (31%), Positives = 194/395 (49%), Gaps = 13/395 (3%)

Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTT 164
             Y    +N+  + VTGT+GK++++  + Q  +  G  +  +G           + + TT
Sbjct: 2   FFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGNGLFGQIVEAKNTT 61

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            S + +  +LS     G    S+E SSHGL QHR++ +   A  FTNL RDH+DYHQ+ +
Sbjct: 62  GSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSME 121

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKK 281
            Y  AK RLF EL  +       ADD    + +    +A    ++  ++    +++    
Sbjct: 122 NYAAAKKRLFTELDTQIKVIN--ADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAIN 179

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +        +T      +     PL G F V N L+     ++ G     +L   + L  
Sbjct: 180 IHYHFKGADITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKG 239

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V GR E +   ++   + VDYAHT ++LE  L   R    G +  +FGCGGDRD+GKRP+
Sbjct: 240 VCGRMEMIRYPNKPT-VIVDYAHTPDALEKALIAAREHCQGELWCIFGCGGDRDRGKRPL 298

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIEMLNK 458
           M ++A   A+  IVT DNPR+E   +I A+I+ G           +R +AI+ AIE   +
Sbjct: 299 MAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVE 358

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            DV+++AGKGHE   I+ + E     D +I  + L
Sbjct: 359 NDVILIAGKGHEHYQIIGS-EVVHFSDQEIALDFL 392


>gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 481

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 109/497 (21%), Positives = 211/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ K  +F E+I     +   +++   +++S DSR   +  +F  + G       F+ +
Sbjct: 9   DILKKDQNFREIIADGDYY-FNYQDLTFDKISYDSRKADSRTLFF-VKGEHFK-REFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+A G    +  +   +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVAAGLGFYLSETDLEV---------GIPVLLVNDIKQAMSLIAMEFYGHPEQKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        + LTTP  + L + ++   +
Sbjct: 117 TGTKGKTTAAYFAYNILKQSHKPALLSTMNTTLDGETFFKSTLTTPESLDLFEMMAQAVA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+    G F N+  DHI   +     F         L+ 
Sbjct: 177 NARTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLMD 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++ +   + + + ++  N G            +  +        +          
Sbjct: 235 NSRAVVVNSGMDHFQVLAEQVANYGHDFYGPDSANSILQSQAFSFEAQGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +   + +   VPGR E +  ++ G +++
Sbjct: 287 GSYDIQLIGRFNQENAIAAGLACLRLGASLEDIQAGIAQ-TRVPGRMEVLTQSN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDD 418
           VDYAH  +SL  +L  ++    G+ ++V G  G++ + +R   G +     +   I+T D
Sbjct: 345 VDYAHNGDSLAKLLSVVQEHQKGQTVLVLGATGNKGESRRKDFGLLLNQHPEIKVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+ AI +   + D +++AGKG +   I+ 
Sbjct: 405 DPNREDPIAIAKEIASYISFEVDMIADREEAIKKAISLTSAEGDAVILAGKGADAYQIIN 464

Query: 477 NGEKKMSVDCDIIREIL 493
           + +     D  +  + +
Sbjct: 465 DQKVPYPGDYALAEKYI 481


>gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
 gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
          Length = 532

 Score =  239 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 128/527 (24%), Positives = 203/527 (38%), Gaps = 49/527 (9%)

Query: 9   KDFPELINQLSIFPMQWRERK-INEVSSDSRHI-----------QAGWIFVAIVGNKEDG 56
           K   E I  + +      ++  IN V  DSR +           + G  F A+ G   DG
Sbjct: 5   KSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDG 64

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             FI  AI  GA  I      +              + V++ RK +S  ++ LY +    
Sbjct: 65  KKFINSAIENGAVCIFYEGDLNNHSC-----DEICFVQVNDVRKTMSKVSALLYDEPSRT 119

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLA 171
             ++ VTGT GKSS  SF+ Q+    G  +            +        TTP    + 
Sbjct: 120 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNVVQ 179

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             L+ +   G ++  VEASSHGL     RL+ +   AG F N+ ++H+++H T + Y   
Sbjct: 180 LRLAQMRDSGCSYAVVEASSHGLSPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 239

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  LF  L                ++          +     +  +   LKK+       
Sbjct: 240 KANLFRALDKNPGKGFPIFGIVNYEDPSAPYFMEATQKNVYPFSTELKDLKKIEEYKGLF 299

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNA--------------LVAAGLCIAIGIDSALVLEH 335
              I        F        + Y                     +    G+D A ++E 
Sbjct: 300 AKDIEESSSGIKFTLCDFSSRKEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEK 359

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGG 392
           L  +  V GR   +    +   + +DYAHT +S   I  +I+       G++I +FG GG
Sbjct: 360 LPLVKPVKGRMMLI-DEGQDFEVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGG 418

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRI 446
           +RD  KRP  G+IA   +DI I+ D++PR ED  ++   I  G P            +R 
Sbjct: 419 ERDVKKRPEQGRIAALYSDIVILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIPDRP 478

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            AI+ A  +  K D +++ GKGHE   I  +       +    R++L
Sbjct: 479 SAIKKAFSLAGKNDAVLLLGKGHENSIIFKD-RTMPYDEETTARKLL 524


>gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
          Length = 481

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 211/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K+  F E+INQ S +   + +   + +S DSR ++   +F  + G       F+  
Sbjct: 9   NILKKNGLFREIINQGSYY-YNYSDVDFDSISYDSRKVKERSLFF-VKGASFK-KEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI+QG +  +    Y +           P ++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AISQGLDWYIAEQDYEV---------GIPAIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVH 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGP---IEHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVVINSDMDHFSVLKEQVEDQEHDFYGNQSS--NQIENSKAFGFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +     G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIQ-KGIAATRVPGRMEVLTQK-NGAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R +AI+ A+ + +++ D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIAEEISSYISHPVEKIADREQAIQAAMAITDQELDAVIIAGKGADRYQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GVKESYPGDAAVAERYL 481


>gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
 gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
          Length = 428

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 135/422 (31%), Positives = 210/422 (49%), Gaps = 6/422 (1%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+     E+   +S   +   +  ++ +  DSR IQ G  FVAI+G+  DG LFI +
Sbjct: 7   LAKLLKPWISEMAGSVSYLSLD--DIVVSNLELDSRAIQQGDSFVAIIGHTVDGRLFIER 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA +++  +    +    T     PI+ +      LS+ A+RLY ++ + ++ VTG
Sbjct: 65  AVQAGATSVLAQADSEHKHGEVTYIGEVPIIHLYQLDTLLSVIAARLY-QYQQQVIGVTG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+++   + Q     G  +  +G T        ++ + TT S I + + L+ L  QG
Sbjct: 124 TNGKTTITQLIAQWIGLLGDKAAIMGTTGNGFLDQLEEAKNTTGSAIDVQRILAKLDQQG 183

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + ++E SSHGL Q R+  +    G FTNL RDH+DYH T + Y  AK  LF      E
Sbjct: 184 AHYTAMEVSSHGLVQGRVAAVPFKLGIFTNLSRDHLDYHGTMEGYEAAKKLLFTGH-HCE 242

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   D    + + +R+      V       + +    V    +   +         +
Sbjct: 243 HAVLNIDDVVGRRWLSERSDAIAVSVEGRQEGERGLWATTVKYSDSGISLEFDGYFGQGN 302

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL G+F   N ++A    +A+G D   + +   KL  V GR E   T S+  +I VD
Sbjct: 303 LQAPLIGQFNASNLMLAFASLLALGFDIEHLQQTAPKLQPVLGRMELFQTTSKP-KIVVD 361

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE  L  +R    G++ V+ GCGGDRD+GKRP+M  IA  LAD  I++DDNPR
Sbjct: 362 YAHTPDALEKALLALRVHCEGKLWVIVGCGGDRDKGKRPMMAAIAERLADHVILSDDNPR 421

Query: 422 SE 423
           SE
Sbjct: 422 SE 423


>gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 410

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 127/430 (29%), Positives = 198/430 (46%), Gaps = 29/430 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----M 231
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK      
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQ 223

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                       A++ ADDA S  + K              Q        +    +    
Sbjct: 224 LGNSYHTSNPKIAVLNADDAESVRMQKATAAHIITFGI--KQEADFQASNIKITSHGSTF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +     +F     + G F VYN L A     A+ I     ++ +E +  V GRFE V  
Sbjct: 282 DLGTPVGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHA 341

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + VDYAHT + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D A 
Sbjct: 342 GQE-FPVIVDYAHTPDGLLNVLETIDEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYAT 400

Query: 412 IAIVTDDNPR 421
             I T +NPR
Sbjct: 401 NPIFTSNNPR 410


>gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
 gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
          Length = 528

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 138/485 (28%), Positives = 206/485 (42%), Gaps = 24/485 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA--------YSLQD 81
           I  V+ DSR ++ G  FVA+ G K DG  F   A+A GA  +V               Q 
Sbjct: 48  IAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPTAADREADPQI 107

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ--IC 137
                    P++VV N R+ L L A+ + G       +  +TGT+GK++ +  +      
Sbjct: 108 GEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTTSYVLYNLLAG 167

Query: 138 QRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                          I     +    TTP    + + L  +   G +   +E SSHGL+ 
Sbjct: 168 ILGKDKVGLSTTVEVIIDGVGRPAMRTTPEAPLVQENLRRMVGAGASDAVLETSSHGLEL 227

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+ G++  +  FTNL RDH+D H   + YF  K +LFE          +   D      
Sbjct: 228 HRVTGVEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFERTEGP----RLANVDDDYGRR 283

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + R                 I       +   Q    +    +     PL G++   N  
Sbjct: 284 LAREFPGSLTFGYSPEADYQIVDPTDLTLEGMQFTLRTPGHGELRLEPPLVGDYNALNVA 343

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSLEMILKN 375
            A  + +  G D   V++ ++ L  VPGRF+ +      G    VDYAHT   LEM+L  
Sbjct: 344 GAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAEAADHGFMAVVDYAHTEVGLEMVLTV 403

Query: 376 IRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            R I     GR+I V+G  G+RD  KRP+MG++   +AD+ I+T D+P  EDP  I  E+
Sbjct: 404 ARKIADMAGGRLICVYGAAGERDAAKRPLMGEVVSRIADVGIITTDDPYGEDPVTIADEV 463

Query: 433 IHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           + G          +R EA+  A+ M  + D+L+  GKG E    +  G+     D   IR
Sbjct: 464 MAGADPADTHIVVDRREALLEAVAMARENDLLIACGKGDEPFQHLPEGDVDHH-DPTSIR 522

Query: 491 EILGL 495
           E L L
Sbjct: 523 EGLSL 527


>gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 562

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 155/554 (27%), Positives = 248/554 (44%), Gaps = 78/554 (14%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L      E+I   +          ++ ++ DSR +++  +F A+ G +  G  F  Q
Sbjct: 5   LKKLAEIARGEIIGDGT--------VTVDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQ 56

Query: 63  AIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
                A+A++  +A    L         + PI+VVD+ R  L   ++ +YG   +N  +L
Sbjct: 57  ---TSAKAVLTDAAGVDILNGSDTAESFDRPIIVVDDIRAVLGDISAEIYGHPTQNLTVL 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYL 177
            VTGTSGK++    ++     +G S+  IG T T  +    D +LTTP    L +  + +
Sbjct: 114 GVTGTSGKTTTTYLLESGLLAAGYSTGLIGTTGTRINRTPVDTQLTTPEAPTLQELFARM 173

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GVTHV +E SSH LD  R+ G+    G FTNL +DH+D+H T + YF+AK +LF   
Sbjct: 174 VDEGVTHVVMEVSSHALDLGRVQGVDFAVGGFTNLSQDHLDFHPTMEEYFSAKAKLFVGN 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV------ 291
                 A++  +D + + +  +       +  V   G  +H     ++    ++      
Sbjct: 234 -NAARHAVVCINDDWGERLADQVDAEDIPLTVVSTTGAIVHTGDEGSVAEADEMLRERTR 292

Query: 292 -----------------------------------TISVEGKDFDFLFPLPGEFQVYNAL 316
                                                +   + FDF  PLPG+F + NA 
Sbjct: 293 ELLVPGTVVAWQQSVETTGEQQVALEINPPRESEVIQAEMARSFDFRLPLPGDFNIANAG 352

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A G+  A GID    +  L K+ V PGR + +    +     VDYAH   ++E +L+ +
Sbjct: 353 LAVGMASAAGIDLDTFITALTKVAV-PGRMQRI-DEGQDFVAVVDYAHKPAAIEAVLETL 410

Query: 377 RTI-------TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           R+          GR+ VV G GGDRD  KR +MG  A   AD  +VTDDNPR+EDP  IR
Sbjct: 411 RSQLESAGNTAQGRLGVVVGAGGDRDSSKRGLMGAAAAKAADFVVVTDDNPRTEDPAPIR 470

Query: 430 AEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
             ++ G              +E  +R +AI   +   +  D ++V GKGHE   ++  G 
Sbjct: 471 EAVMAGAREAAEESNRPVEIVEIASRADAIDAVVNWAHDGDAVIVVGKGHEVGQLIG-GT 529

Query: 480 KKMSVDCDIIREIL 493
                D + +   L
Sbjct: 530 MHHFDDREELSRAL 543


>gi|313899192|ref|ZP_07832712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312956015|gb|EFR37663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 468

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 134/478 (28%), Positives = 225/478 (47%), Gaps = 23/478 (4%)

Query: 19  SIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           ++  +   + +I   +S D+R ++  W+FV   G+  DG  F+ +A+ +GA  ++     
Sbjct: 3   ALLHIDCEDARILQGISDDTRDVKKDWLFVCRKGSLYDGAAFLQEALDKGAV-VLCDQML 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            +Q        +   +       +     +RL+      ++ +TGT+GK+SVAS + Q+ 
Sbjct: 62  PMQH--VYYTPHVERITQALLELYYGDLCTRLH------VIGITGTNGKTSVASIISQLL 113

Query: 138 QRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +  G    QIG  S        +   TTP    LA        + +THV +E SSH +DQ
Sbjct: 114 KMEGCRVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAHDEKITHVVMEVSSHAIDQ 173

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R+  +      +TN+ +DH+DYH T+  Y   K +L   L P+ +       ++    +
Sbjct: 174 NRISFLHFDDIVYTNITQDHLDYHLTRVHYRYTKFKLRRYLKPQGTIVY----NSDLSYM 229

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +  + A    +S+G Q     L  V          +S   + +DF   L G   VYN  
Sbjct: 230 QELVNLAQHACISIGMQAAHFPLHHVELS----DHDLSFRLQGYDFHARLLGMVNVYNLA 285

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G     + +  EKL  V GR E       G  I++DYAHT+ ++E +L   
Sbjct: 286 EAIVVVHRLGFSYERLRKDCEKLLPVSGRMEV--MEVGGFTIWIDYAHTAAAVEELLVFA 343

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HG 435
            ++  GRI+ + GCGG+RD+ KRP M  IA   +D+A+ T DNPR E  ++I A++    
Sbjct: 344 NSVKKGRILTILGCGGERDRTKRPAMAAIAAKYSDLAVFTSDNPRGESVDRILADMKCES 403

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            P      NR  AI+  I++    D++++AGKG E   I   G++    D   ++E L
Sbjct: 404 FPNAAVFENRYFAIKHTIKVAQNSDIIIIAGKGSEET-ITAFGQEYPFSDRSCVKERL 460


>gi|78065116|ref|YP_367885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
 gi|77965861|gb|ABB07241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
          Length = 512

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 146/472 (30%), Positives = 216/472 (45%), Gaps = 25/472 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++AG +FVA   +  D   FI  A+A+GA A++          +  +    P 
Sbjct: 31  LHADTRSLKAGDVFVAYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALAVPA 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
                  +     AS  YG   ++   + VTGT+GK+S   ++             IG  
Sbjct: 91  -----LDQLAGEIASSWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAVIGTL 145

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       F
Sbjct: 146 GTGMPGQLVPTGFTTPDASQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAVF 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263
           TNL +DH+DYH T  AY  AK +LF         A+I  DDA  + +++      R    
Sbjct: 206 TNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVINRDDAAGQRLLEKLAGRVRTIAY 263

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G    S     + +    V A        +     D D      G F V N L   G  +
Sbjct: 264 GIGDASAPDADRELVALDVRATTTGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGSLL 323

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379
           A  +     L  + +L  V GR + +G   +       +DYAHT ++LE  L  +R I  
Sbjct: 324 AADVPFDAALAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAT 383

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              GR++ +FGCGGDRD  KRP+MG IA   AD  +VT DNPRSEDP++I  +I+ G+  
Sbjct: 384 ARGGRLVCMFGCGGDRDATKRPLMGAIAERFADETVVTSDNPRSEDPQRIIDQIVAGMTA 443

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                   +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 444 PDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 494


>gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
 gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
          Length = 564

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 144/496 (29%), Positives = 225/496 (45%), Gaps = 22/496 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL   L +        +I  ++ DSR ++ G ++ A+ G +  G  F  QA A GA A
Sbjct: 66  LGELATLLGLPESGAA--QITGITHDSRAVRPGDLYAALPGARLHGADFAAQAAALGAAA 123

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++     + +       +  P+L V + R  +   A+ +YG+  E    L +TGTSGK++
Sbjct: 124 VLTDPEGAER----AAATGLPVLAVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTT 179

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G ++  +G            +  TTP    L    + +  +GV  V++
Sbjct: 180 TAYLVEGGLRAAGRTTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAM 239

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF E   +     + 
Sbjct: 240 EVSSHALVLGRVDGCVFDVAVFNNLSPEHMEFHTGMEDYFQAKAQLFTERRARLGVVNL- 298

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306
            DD Y + + K A        + G        + V + H    +T+            PL
Sbjct: 299 -DDEYGRRLAKEASIPVVTFSAAGDPAADWRAEDVVSGHMDSTLTLVGPEGQRVRAKAPL 357

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N + A     A G+D     + +  +  VPGR E V          VDYAH +
Sbjct: 358 PGPFNVANTVAAIVTLAAAGLDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKT 416

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++E +L+ +R +T+G++ +V GCGGDRD  KR  MG  A   AD A++T DNPRSEDP 
Sbjct: 417 DAVESVLRALREVTTGKLHIVLGCGGDRDTTKRAPMGAAAARYADTAVLTSDNPRSEDPL 476

Query: 427 KIRAEIIHGIPGFIEKG--------NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           KI A +  G      +         +R  AI  A+      D ++VAGKGHE       G
Sbjct: 477 KILAAMFEGAVSVPAEERGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHEQGQDTA-G 535

Query: 479 EKKMSVDCDIIREILG 494
             +   D  ++R  + 
Sbjct: 536 VVRPFDDRAVLRAAIE 551


>gi|167586014|ref|ZP_02378402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ubonensis Bu]
          Length = 512

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 144/472 (30%), Positives = 216/472 (45%), Gaps = 25/472 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++AG +F+A   +  D   FI  A+A+GA A++          +A +    P 
Sbjct: 31  LHADTRSLEAGDVFLAYAVDGADNRAFIADAVARGAAAVLYQPDGLAAAPAAPVALAVPA 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
                  +     AS  YG   +++ AV  TGT+GK+S   ++             IG  
Sbjct: 91  -----LNELAGDIASGWYGDPSDSLFAVGVTGTNGKTSCTQWIAAALTALDRPCALIGTL 145

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + +         TTP    L ++L+ L   G   V++E SSH L Q R++G       F
Sbjct: 146 GSGMPGHLVPTGFTTPDAPQLQRSLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAVF 205

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263
           TNL +DH+DYH+T  AY  AK +LF         A++  DDA    ++       R    
Sbjct: 206 TNLTQDHLDYHRTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGSRLLASLSGQVRTIAY 263

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G          + +    V A        +     D D      G F V N L   G  +
Sbjct: 264 GIGDAPAAGADRELSAHDVRATATGTAFRLRSSWGDTDVEVGTLGTFNVSNLLAVLGTLL 323

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTITS 381
           A  +     L  + +L  V GR + +G   +       +DYAHT ++LE  L  +R I  
Sbjct: 324 AADVPFDAALAEVARLEPVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAV 383

Query: 382 GR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
            R   ++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  +I+ G+  
Sbjct: 384 ARGGALVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQIVAGMTA 443

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                   +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 444 PDNARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|332670122|ref|YP_004453130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
 gi|332339160|gb|AEE45743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
          Length = 526

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 143/498 (28%), Positives = 222/498 (44%), Gaps = 27/498 (5%)

Query: 11  FPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             +++   ++ P +  +  +    V+  S  +  G +FVA+ G +  G  +  QA+  GA
Sbjct: 17  LADVVETFALSPDRPLDAALVTTGVTVASTDVAPGDLFVAVPGMRVHGATYAAQAVDAGA 76

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A+V  +A +            P+LV  + R      A+ +  +    ++ V  T     
Sbjct: 77  VAVVTDAAGA----ELAGDLGVPVLVAPDPRDLAGPLAAHVLDEPARGLVTVGVTGTNGK 132

Query: 129 VA--SFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                FV    + +  ++  +G     +   A ++  TT     L   L+    +G   V
Sbjct: 133 TTTTYFVDAALRAAHRTTAVLGTVELRVGDEAVESPRTTVEAPALQGILALARERGAGAV 192

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH L   R+ G+      FTNL RDH+D+H   + YF  K RLF     +    +
Sbjct: 193 AMEVSSHALALGRVRGLTFDVVGFTNLQRDHLDFHGDMEGYFRDKARLFAPEQARRGVVV 252

Query: 246 IYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
              DD + + +                          +    +         T+      
Sbjct: 253 --VDDEWGRRLAATSPVPVETVATHVGDPHGADADWAVVAADIGLDGVGSTFTLRGPDGT 310

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     PLPG   V NA +A  L    G+D A  ++ +   H +PGR E V     G  +
Sbjct: 311 EHAAASPLPGLVNVSNAALAIVLAHTAGVDLATAVDAVAHAHEIPGRMERVVERGDGLPL 370

Query: 359 Y-VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             VDYAHT ++L + L+ +R IT GR+I+VFG  GDRDQGKRPIMG+IA  LAD+ +VTD
Sbjct: 371 CLVDYAHTPDALVLALEAVRPITPGRLILVFGSDGDRDQGKRPIMGQIAARLADVLVVTD 430

Query: 418 DNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +NPRSEDP  IRA I+ G+           E  +R +AIR A+ +   QD ++V GKGHE
Sbjct: 431 ENPRSEDPAVIRAAILEGVRAERPSGTDVHEATSRAQAIRDALALATDQDTVIVTGKGHE 490

Query: 471 TVHIVTNGEKKMSVDCDI 488
               +  G      D D+
Sbjct: 491 PTQEIA-GVFHRYNDRDV 507


>gi|331701599|ref|YP_004398558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329128942|gb|AEB73495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 511

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 110/492 (22%), Positives = 191/492 (38%), Gaps = 40/492 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
              +++S +S+ +    +F    G       ++  A   GA A +               
Sbjct: 29  HPFDQISYNSKSVTDNCLFFC-KG-NFKSA-YLDDARQNGATAYMSEK--------TYQN 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV-----QQICQRS 140
           +  P ++V N +K +SL ++  +G   +    +A TGT GK++ A F      Q   ++ 
Sbjct: 78  AGIPGIIVKNIQKAMSLVSAAFFGFPQDQLPTIAYTGTKGKTTSAYFTKAILDQTYQRKV 137

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
            LSS               + LTTP  + L   +   +  G++H+ +E SS    ++R+ 
Sbjct: 138 ALSSTINTVVGLKPEDVVKSNLTTPESLDLFTMMRKAADNGMSHLVMEVSSQAYKKNRVY 197

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+    G F N+  DHI  ++          +    +                     +A
Sbjct: 198 GLHYDVGVFLNISPDHIGRNEHPTFADYLHCKEQLLVNSDVCVLNADGTHLTDIFYAAKA 257

Query: 261 HNAGCRVLSVGYQGKFIH---------------LKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 +   G  G+                  L +       +         D  +   
Sbjct: 258 TTQPENIFIYGRAGQNQETEFPVDVEYRSLKDSLTENQIQVTARTAKAKQLNIDGVYRIG 317

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG++   NA+ AA     +G     +   L     VPGR E   T+  G  +YVDYAH 
Sbjct: 318 IPGDYNEGNAVAAAITSALMGAKPTEIAYGLAN-TTVPGRMEIYQTHDHGT-VYVDYAHN 375

Query: 366 SNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             SL  +L  ++    +G++ V+ G  GD+   +R  +GK   + AD A +T D+P +ED
Sbjct: 376 YGSLHSVLDFLKKQAPNGKVTVITGSTGDKGIDRREGLGKAINEAADQAYLTTDDPATED 435

Query: 425 PEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           P++I  EI   I           +R +AI  A+    K D++VVAGKGH+    +     
Sbjct: 436 PQQIAKEIAAHIDTSKVATTYIPDRKQAITKAVSESQKGDLVVVAGKGHDQYQKINGKNV 495

Query: 481 KMSVDCDIIREI 492
               D  I++ +
Sbjct: 496 PYEGDAAIVKNL 507


>gi|170700177|ref|ZP_02891195.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
 gi|170134909|gb|EDT03219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
          Length = 512

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 144/475 (30%), Positives = 216/475 (45%), Gaps = 31/475 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +F+   G   DG     FI  A+A+GA A++          +  +   
Sbjct: 31  LHADTRSLRAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALA 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P        +     AS  YG   ++   + VTGT+GK+S   ++             I
Sbjct: 88  VPA-----LDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIAAALTALHQPCAVI 142

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   +           TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 143 GTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDI 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260
             FTNL +DH+DYH T  AY  AK +LF         A++  DDA  + +++      R 
Sbjct: 203 AVFTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRT 260

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G          + +    V A        +S    D D      G F V N L   G
Sbjct: 261 IAYGIGDAQTPDADRELVALDVRATATGTAFRLSSSWGDADVEVGTLGAFNVSNLLAVLG 320

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378
             +A  +     +  + +L  V GR + +G   +       +DYAHT ++LE  L  +R 
Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 380

Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I G
Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVIAG 440

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 441 MTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|145588350|ref|YP_001154947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046756|gb|ABP33383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 516

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 142/492 (28%), Positives = 215/492 (43%), Gaps = 40/492 (8%)

Query: 36  DSRHIQAGWIFVAIV---GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           DSR IQ+G IF A     G    DG  FI  A+A GA A+V   A          + +  
Sbjct: 29  DSRQIQSGDIFFAYPVGHGAALRDGRQFIEAALANGAAAVVFDPAG----IDPQFQDHPQ 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              V++  + +  F ++ Y    +   ++ VTGT+GK+S+  ++ Q        +  +G 
Sbjct: 85  CFAVESLAEKVGEFCAQWYDYPSKQLKVIGVTGTNGKTSITQWLAQALDEPNHRTAVLGT 144

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T   +       TTP    L   L  L   G   V++E SSH L Q R+ G       
Sbjct: 145 LGTGFPTALVMTGYTTPDAPKLQTQLRELLDGGAQQVAMEVSSHALHQERIAGTWFNCAV 204

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---------MKR 259
           FTNL +DH+DYH +      A+ +           A+I  DD + +E+         ++ 
Sbjct: 205 FTNLTQDHLDYHGSM--GDYAEAKAKLFQQAGLEHAVINLDDPFGRELAINLLAKDSIQV 262

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHN------KQQVTISVEGKDFDFLFPLPGEFQVY 313
                      G++     L+++            Q   +  +   +    PL GEF + 
Sbjct: 263 WAYGLAPTAFKGFEKFASRLQRIYTQDTVLSGATYQTTFVYGDKGTYPLHIPLLGEFNLS 322

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSL 369
           NAL    + +  G+      + +  L  V GR E +       S G    VDYAHT ++L
Sbjct: 323 NALAVWTVLLTQGLSPEEATKRVSHLSPVSGRMELIPLGKNQKSEGLLAVVDYAHTPDAL 382

Query: 370 EMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +  L+ +R +     G++  VFGCGGDRD  KRP MG +A   AD  I+T DN RSEDP+
Sbjct: 383 QKTLQALRPLAEQRGGKLWCVFGCGGDRDITKRPQMGLVAEKFADHIIITSDNSRSEDPQ 442

Query: 427 KIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
            I   I  G+           +R  AI  A+   + +D+++VAGKGHET   + NG+   
Sbjct: 443 AIIQMIADGLNPSTTNVQMIADRAAAIMAAVRHADARDIVLVAGKGHETSQEI-NGKTFD 501

Query: 483 SVDCDIIREILG 494
             D + IR   G
Sbjct: 502 FSDQEHIRLAAG 513


>gi|251781849|ref|YP_002996151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242390478|dbj|BAH80937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 481

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 212/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F E+++    +   ++      +S DSR +    +F A  G       ++ +
Sbjct: 9   NILKKDHNFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADYLKE 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AIA+G    V    Y L         + P+++V + +K +SL A   Y    +   +L  
Sbjct: 66  AIAKGLPLYVSEVDYKL---------DIPVVLVTDIKKAMSLIAMAFYDNPQDQLKLLGF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I + S   +      T+        ++LTTP  + L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFKSQLTTPESLDLFAMMAECVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++          +          ++      +  L       ++     +     
Sbjct: 234 ENSRAVVINSGMDHFPFLA-------NQVANQEHAFYGALSDNQITTSQAFSFEANGQLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   +++
Sbjct: 287 GHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-AKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SLE +L  +    +G ++++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADFGAVINQHPNLTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476
           +P  EDPE I  EI   I   I+   +R +AI+ A+ +    +D +++AGKG +   IV 
Sbjct: 405 DPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPEDAVIIAGKGADAYQIVK 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +   + D  + +  L
Sbjct: 465 GEKAPYAGDLAVAQRYL 481


>gi|254246423|ref|ZP_04939744.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871199|gb|EAY62915.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 515

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 149/473 (31%), Positives = 219/473 (46%), Gaps = 24/473 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++AG +FVA   +  D   F+  A+A+GA A++           A      P+
Sbjct: 31  LHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPDAPA---VPV 87

Query: 93  -LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            L V    +     AS  YG   +++LAV  TGT+GK+S   ++             IG 
Sbjct: 88  ALAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGT 147

Query: 150 TST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             T +         TTP    L ++L+ L   G   V++E SSH L Q R +G       
Sbjct: 148 LGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRANGTAFDVAV 207

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHN 262
           FTNL +DH+DYH T  AY  AK +LF         A+I  DDA  + +++      R   
Sbjct: 208 FTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVINRDDAAGRRLLEKLAGRVRTIA 265

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G          + +    V A        +     D +      G F V N L   G  
Sbjct: 266 YGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVSNLLAVLGAL 325

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI- 379
           +A  +     L  +E+L  V GR + +G   +       +DYAHT ++LE  L  +R I 
Sbjct: 326 LAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIA 385

Query: 380 --TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
               GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +++ G+ 
Sbjct: 386 AARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAGMT 445

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                    +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 446 APDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 497


>gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
 gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
          Length = 481

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 126/497 (25%), Positives = 211/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + E   + +S DSR ++   +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSEVVFDSISYDSRKVKERTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+        +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K S A++   D     V+K                    ++   A        ++ +   
Sbjct: 234 KNSRAVVINSDMDHFSVLKEQVEDQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGILLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N++ D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIAEEISSYINHPVEKIADREEAIKAAMAITNQELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  I    L
Sbjct: 465 GKKEDYPGDAAIAECYL 481


>gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 481

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLVWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|319440251|ref|ZP_07989407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium variabile DSM 44702]
          Length = 549

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 145/518 (27%), Positives = 220/518 (42%), Gaps = 41/518 (7%)

Query: 2   KLQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +L +L      ++      +   +  ++ +   + D+R + A  +F+A+ G +  G  F 
Sbjct: 19  QLAELTGGRLVDVAGTAAGVASAEQGQQTVATAAIDARDVPADGLFMAVPGTRAHGARFA 78

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            Q  + G   ++                    LVVD+ R++L   A+ ++G    ++  +
Sbjct: 79  GQ--SAGHS-VLTDEEG--LGVLVDGSWQGTALVVDDCRQWLGPVAAEIHGHPSRDMTVI 133

Query: 121 TGTSGKSSVASFVQQICQRSGLSSF-QIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLS 178
             T       +         G      IG T T          LTTP    L    + + 
Sbjct: 134 GVTGTSGKTTTTYMMERALLGHRHVGLIGTTGTRIDGRKIPTSLTTPEAPTLQALFARMR 193

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GVTHV +E SSH L   R+ G+      FTNL +DH+D+H T + YF+AK  LF E  
Sbjct: 194 DEGVTHVVMEVSSHALVLGRVRGVDFDVAGFTNLSQDHLDFHPTMEDYFDAKSMLFTEPQ 253

Query: 239 PKE---SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    ++  DD + + +  R  +A   V + G    +            Q VT+  
Sbjct: 254 DPAGELPVPVVCVDDEWGRRLAGRTGDATVTVSTDGEAATWQVSDVAVHPDGTQHVTVDR 313

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GT 351
                ++   +PG F V NA +A    +A G D+++  E  E    VPGR E +      
Sbjct: 314 ADGQVEYDLSIPGAFNVANATLALATLVAAGEDASIADELAEV--SVPGRMEKISGSSPQ 371

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI-----------TSGRIIVVFGCGGDRDQGKRP 400
            +      VDYAH   ++  +L  +              T GR+ VV G GG+RD  KRP
Sbjct: 372 TAVDFLALVDYAHKPGAVTAVLDTLNGQLDRAAAGGNGATRGRLGVVLGAGGNRDHEKRP 431

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------------PGFIEKGNRIEA 448
            MG  A  +AD+ IVTDDNPR EDP  IRA ++ G             P   E G+R EA
Sbjct: 432 KMGAAAAAVADLVIVTDDNPRDEDPATIRAAVLAGAGDAAAQRTDGVSPEIREIGDRAEA 491

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           IR A+      DV+VVAGKGHE+  I+ +       D 
Sbjct: 492 IRDAVGWARSGDVVVVAGKGHESGQIIGDTVVD-FDDR 528


>gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 516

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 130/483 (26%), Positives = 216/483 (44%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++     D+R ++ G +FVA+ G    G  F   A ++GA A++   A      +     
Sbjct: 39  RVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPAG----MAFLTDL 94

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P ++V +        A+  + +  +      VTGT+GK++    ++ +  R G  S  
Sbjct: 95  DIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSL 154

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   + +        +TTP    L    +    + V H+ VE SSH L   R+D +   
Sbjct: 155 VGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFA 214

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264
              FTNL +DH+DYH T + YF  K  LF +        I+         E ++R+    
Sbjct: 215 CVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGVWGQRLAEQLERSGQHD 274

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLC- 322
              LS+  +      K +       ++ +   +GK+      +PG F   NA +A  +  
Sbjct: 275 FVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMPGTFNAINAALAIVMVV 334

Query: 323 -------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                    +  D    L        VPGR E +       R+ VD+AH  +S +++L  
Sbjct: 335 TGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELL---CEEPRVIVDFAHNPDSTKVLLDT 391

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD +   E+P  IR +++ G
Sbjct: 392 MRISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMAG 451

Query: 436 IPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           + G+    +E   R  AI  AI     +D +V+ G+GHE++     G+  +  D  + RE
Sbjct: 452 MKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDL-DDRVVARE 510

Query: 492 ILG 494
            L 
Sbjct: 511 ALS 513


>gi|118472293|ref|YP_888509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118173580|gb|ABK74476.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 520

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 146/474 (30%), Positives = 210/474 (44%), Gaps = 14/474 (2%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+   +  Q G +F A+ G    G  F   A+A GA A++   + +          +
Sbjct: 42  VTGVTLRGQDAQPGDLFAALPGASAHGARFAADAVAAGAVAVLTDPSGAD---LLAGTLD 98

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+LV    R  L   A+ +YG+  E   ++ VTGTSGK++     +   + +G  +  I
Sbjct: 99  VPVLVHPAPRSVLGEAAAIVYGRPAERLRVVGVTGTSGKTTTTYLAEAGLRAAGRVAGLI 158

Query: 148 GPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G            + LTTP    L   L+ +  +GV  V +E SSH L Q R+DGI    
Sbjct: 159 GTVGVRIDGTDLPSALTTPEAPALQALLALMVERGVDTVVMEVSSHALAQGRVDGIGFAV 218

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G FTNL RDH+D+H T   YF AK RLF+   P  + A +   D      M         
Sbjct: 219 GGFTNLSRDHLDFHPTMADYFEAKARLFDPQSPNHAAAAVICVDDQYGVQMAARAETPLT 278

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V + G    +   K   A    Q+  +   G     L               A   +   
Sbjct: 279 VSTSGAAADWRVEKITTAGPGAQEFVLVDPGGMHHQLGVGLPGRYNVANAALAVALLDAV 338

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             S        +   VPGR E      +     VDYAH   +L+ +L+ +R     RI V
Sbjct: 339 GVSPEQAAPGLRTATVPGRLE-SIDLGQDFLALVDYAHKPGALQAVLETLRAAEPRRIAV 397

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF------I 440
           VFG GGDRD GKR  MG++  +LAD+ +VTDDNPRSEDP  IR+ I+ G          +
Sbjct: 398 VFGAGGDRDPGKREPMGRVTAELADLVVVTDDNPRSEDPATIRSAILAGARAVASDAEIV 457

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           E G+R  AI  A+      D++++AGKGHE+   V +  +    D D +   L 
Sbjct: 458 EIGDRRAAIDHAVAWAQPGDIVLIAGKGHESGQTVGDHTR-PFDDRDELAAALE 510


>gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae OXC141]
          Length = 481

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLCLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|227503275|ref|ZP_03933324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075778|gb|EEI13741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 511

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 157/499 (31%), Positives = 240/499 (48%), Gaps = 24/499 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L        +     +++    DS  +  G +F A+ G +  G  F+       A A
Sbjct: 5   LEKLAQLSHGRVIGDGTVEVSACGLDSASLPEGALFAALPGTRVHGAQFVGD---TKAGA 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           ++  +     D         PI+VVD+ R  L   A+ +YG       +L +TGTSGK++
Sbjct: 62  VLTDAPG--LDHLRQANETRPIIVVDDIRAVLGPIAAEIYGHPTRDLTVLGITGTSGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +  ++    ++G S   IG T T  +       LTTP    L +  + +  +GVTHV +
Sbjct: 120 TSYLLEAGLLQAGHSVGLIGTTGTRINRTPVPTSLTTPEAPRLQELFARMKEEGVTHVVM 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L+  R+ G       F+NL +DH+D+H T + YF+AK RLF      +  A+I 
Sbjct: 180 EVSSHALELGRVRGTNFAVAGFSNLSQDHLDFHPTMEEYFSAKSRLFLGEQAAQ-RAVIC 238

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---QQVTISVEGKDFDFLF 304
            DD + + +     +AG  V +V  +     +            Q+V ++++G D+ F  
Sbjct: 239 VDDEWGERLRGMVKDAGAPVTTVATRTGDATISARQTATEATGAQEVDLNLDGTDYSFRL 298

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPGEF + NA +A G+  A+G D  + L  +E + V PGR E +          VDYAH
Sbjct: 299 PLPGEFNIANAALALGMATAVGEDPQVFLTGVENVAV-PGRMERIDRGQ-DFVAVVDYAH 356

Query: 365 TSNSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              ++  +L  +R     TSGR+ VV G GGDRD  KRPIMG+ A   AD+ +VTDDNPR
Sbjct: 357 KPAAIAAVLDTLRLQLEGTSGRVGVVVGAGGDRDSTKRPIMGEAAATRADLTVVTDDNPR 416

Query: 422 SEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           +EDP  IRA +I G           E+G+R  AI   ++     D ++V GKGHE   +V
Sbjct: 417 TEDPAAIRAAVIEGARRAAPDADIREQGSRARAIDEVVDWAQPGDAIIVVGKGHEVGQLV 476

Query: 476 TNGEKKMSVDCDIIREILG 494
                    D + +   + 
Sbjct: 477 GE-RTLHFDDREEMARAIE 494


>gi|77408653|ref|ZP_00785387.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
 gi|77172771|gb|EAO75906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
          Length = 483

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 208/500 (41%), Gaps = 31/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++    +F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  G    V    Y           + P+++V++ +K +SL +   Y      +  
Sbjct: 64  LDSAITAGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      T+        + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++         ++K                   + + V          +  +
Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGD------YSENVITESQAFSFHVKGK 285

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            ++  +   L G+F   NAL A   C+ +G+    +   + +   VPGR E +   + G 
Sbjct: 286 LEN-TYNINLIGKFNQENALAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++  I+
Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI  A  + N + D +++AGKG +   
Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+       S D ++ ++ L
Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482


>gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV200]
 gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 481

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|163815921|ref|ZP_02207291.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
 gi|158448731|gb|EDP25726.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
          Length = 507

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 110/517 (21%), Positives = 203/517 (39%), Gaps = 40/517 (7%)

Query: 1   MKLQDLIYKDFPELINQLSI---FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK ++L      ++++Q  +   +    ++     ++ +S+ +  G  FV   G      
Sbjct: 1   MK-ENLQLTTLLDILDQQKLVTDYSEDCKDISPTHITINSKDVVPGTFFVC-KGASFK-E 57

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  AI+QGA   +    Y           + P ++V + RK ++L A   +G   +N+
Sbjct: 58  EYLKSAISQGAIVYLSQQKYD--------GVDIPYIIVSDIRKAMALAARWFFGNPGDNL 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKA 173
             V  T  K                +  +    ST      +   +  LTTP PI L   
Sbjct: 110 TKVGITGTKGKTTVTFVMKDILDKYTDNRCAAFSTHEIDVGTKVFETTLTTPEPIELQTY 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                ++G TH  +E SS  +  +R+ G     G FTN+  DHI    T+ A     +  
Sbjct: 170 FDMAVNEGCTHCIMEVSSQAMKMNRIYGEHYKVGVFTNIDYDHIS--PTEHASMEDYLGC 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---------------SVGYQGKFIH 278
               L +    ++Y+D  Y + +     +    V                      +F  
Sbjct: 228 KVSFLKQCDNVVLYSDTRYFETIYNEVRDKHVVVYGSKESVEKLMSRDDDFFEKDTEFAS 287

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +       +     +   G++  +   L G++ V N + A    + IGI +  +   +  
Sbjct: 288 IHNEDLTDHNSYFELIYGGENRAYNTNLIGDYNVENIVAAIISSLLIGIPNEQIRSSIRD 347

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQG 397
           ++V PGR +            +DYAH   S+  + + ++     + I VVFGCGG+R + 
Sbjct: 348 IYV-PGRLQVYHWK--DRTFMIDYAHNYISMYRLYEMVKKTMKPKSITVVFGCGGERYKK 404

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEML 456
           +R  MG++A   AD  ++T ++P  E  E I  EI   I        +R EA+  A++  
Sbjct: 405 RREDMGRLAEQYADKVVLTMEDPGFESCEDICKEIKQYITKPCYIIVDREEALTRALDEA 464

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              ++++  GKG E+   +     +   D  +I   L
Sbjct: 465 QPGELVITTGKGIESTQRINGTFVQCHSDAQVIEHWL 501


>gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae JJA]
 gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae JJA]
          Length = 481

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQSYLVRRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVKDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
 gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
          Length = 584

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 138/516 (26%), Positives = 221/516 (42%), Gaps = 52/516 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNK---EDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                +   DSR +     F  +  +    +    ++ QA A  A  I+          +
Sbjct: 68  NIPFQQFCLDSRQLIRNEAFALLKSHTPNCQKSRDYLYQA-ANNAAFILSEIDPLALIAT 126

Query: 84  ATIRSN----------------------TPILVVDNTRKFLSLFASRLYGKHPE----NI 117
             I  +                       P+L V N R FL                  +
Sbjct: 127 GNIPPHANLELTPDNAKYIAQQQLDALPCPVLYVPNIRDFLGSLIQARLQYQQRVTLPTV 186

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSY 176
           +AVTGT+GK++++  V Q+ Q +G+SS  +G               TT   + + + L  
Sbjct: 187 VAVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRLGALVQASHTTGDTLAVQQFLHQ 246

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  +G   +++EASSHGLDQ RL G+ +    +TNL RDH+DYH     Y  AK +LF++
Sbjct: 247 MGKEGAELLALEASSHGLDQQRLQGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFDK 306

Query: 237 -LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVT 292
              P  + AII  DD Y++ ++  AH +  +V +               +    +  +++
Sbjct: 307 AHFPDLTHAIINIDDEYAQIMLDTAHASHLKVWTYSLDPSKTATFVAADITPSLHGVEIS 366

Query: 293 ISVEGKDFDFLF---------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +  +  D                     +     A  L    GID   ++  + +L    
Sbjct: 367 LCTDFGDGKVNHLDIVSPLLGRFNVANLLAAIAAAVALGHKTGIDIERIIAVIPQLQGAV 426

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR + V +N   G   VDYAHT ++L  +L +++T   G++  VFGCGGDRD GKRP+M 
Sbjct: 427 GRMQRVPSN--DGCFIVDYAHTPDALSQVLASLKTHCKGQLWAVFGCGGDRDTGKRPLMA 484

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNK 458
           +  L  AD  I+T DNPR+EDP  I  ++  G+          +  R  AI  A+     
Sbjct: 485 QAGLAGADKVILTADNPRTEDPNVILQDMQAGMSTEQYQRTHIESARQTAIEYAVSQAAA 544

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            D++V+AGKGHET   + N  +    D  I++  L 
Sbjct: 545 DDIVVIAGKGHETYQEINN-IRYDFDDSVILQNALE 579


>gi|172059544|ref|YP_001807196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992061|gb|ACB62980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 146/475 (30%), Positives = 216/475 (45%), Gaps = 31/475 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R +QAG +F+   G   DG     FI  A+A+GA A++          +  +   
Sbjct: 31  LHADTRSLQAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALA 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P        +     AS  YG   +++  + VTGT+GK+S   ++             I
Sbjct: 88  VPA-----LDQLAGDIASGWYGDPSDSMLAIGVTGTNGKTSCTQWIAAALTALHQPCAVI 142

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   +           TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 143 GTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDI 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260
             FTNL +DH+DYH T  AY  AK +LF         AI+  DDA    +++      R 
Sbjct: 203 AVFTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAIVNRDDAAGCRLLEKLAGRVRT 260

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G          + +    VCA        +     D D      G F V N L   G
Sbjct: 261 IAYGIGDAQTPDADRELVALDVCATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAVLG 320

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378
             +A  +     +  + +L  V GR + +G   +       +DYAHT ++LE  L  +R 
Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 380

Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I G
Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQRIIDQVIAG 440

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 441 MTVPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae
           TIGR4]
 gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 481

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 EKSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae 70585]
 gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae 70585]
          Length = 481

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+ +DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISQDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQNHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   N++ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENSVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|319946493|ref|ZP_08020729.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
 gi|319747324|gb|EFV99581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
          Length = 481

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 120/504 (23%), Positives = 217/504 (43%), Gaps = 35/504 (6%)

Query: 1   MKLQ---DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MK++   +++ +  +F E++     +         N++S DSR + A  +F  + G    
Sbjct: 2   MKIETVLNILKEDHNFREILQD-GEYHYSASGVSFNQISYDSRKVNAETLFF-VKGANFK 59

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              F+ QAI QG +  V    + +         + P ++V + ++ +SL A   YG    
Sbjct: 60  -KEFLEQAIEQGLQWYVAEQDFEV---------SIPAIIVTDIKQAMSLIAMEFYGHPER 109

Query: 116 --NILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAK 172
              +LA TGT GK++ A +  +I ++    +      T+        + LTTP  I L +
Sbjct: 110 QLKLLAFTGTKGKTTSAYYAYKILEQGHRPAMLSTMNTTLDGKTFFKSTLTTPESIDLFE 169

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++   +   TH+ +E SS      R+ G+    G F N+  DHI      +        
Sbjct: 170 MMAQAVANDRTHLIMEVSSQAYLVKRVYGLIFDVGVFLNISPDHIGPI---EHPTFEDYF 226

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             + LL + S A++   D    +++                G  +   K  +     ++ 
Sbjct: 227 YHKRLLMENSRAVVVNSDMDHFDILAEEVAEQDHDFYGSQSGNQVQNSKAFSFSVTGKLA 286

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   D+   L G F   NA+ A   C+ +G     + + + K   VPGR E +   
Sbjct: 287 -------GDYQTQLIGRFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRMEVLTQK 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G ++++DYAH  +SL+ +L  + T  +G I +V G  G++ + +R   G +  D  +I
Sbjct: 339 N-GAKVFIDYAHNGDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEI 397

Query: 413 -AIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
              +T D+P  EDP  I  EI   I   +E   +R +AI+ A+      +D +++AGKG 
Sbjct: 398 QVFLTADDPNYEDPLAIAEEISSFITRPVEKIADREQAIQQAMATTSKPEDTVIIAGKGA 457

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +   IV   +++   D  I    L
Sbjct: 458 DCYQIVNGVKEEYPGDAAIAERYL 481


>gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
 gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
          Length = 516

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 130/483 (26%), Positives = 216/483 (44%), Gaps = 25/483 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++     D+R ++ G +FVA+ G    G  F   A ++GA A++   A      +     
Sbjct: 39  RVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPAG----MAFLTDL 94

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           + P ++V +        A+  + +  +      VTGT+GK++    ++ +  R G  S  
Sbjct: 95  DIPAIIVPDVASVAGQAAAIAFNQPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSL 154

Query: 147 IGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G   + +        +TTP    L    +    + V H+ VE SSH L   R+D +   
Sbjct: 155 VGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFA 214

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264
              FTNL +DH+DYH T + YF  K  LF +        I+         E ++R+    
Sbjct: 215 CVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGVWGQRLAEQLERSGQHD 274

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLC- 322
              LS+  +      K +       ++ +   +GK+      +PG F   NA +A  +  
Sbjct: 275 FVTLSLTGRPADWQGKIIELDGGYTELRLRAFDGKEASVQVRMPGTFNAINAALAIVMVV 334

Query: 323 -------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                    +  D    L        VPGR E +       R+ VD+AH  +S +++L  
Sbjct: 335 TGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELL---CEEPRVIVDFAHNPDSTKVLLDT 391

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD +   E+P  IR +++ G
Sbjct: 392 MRISTKGRLLLVMGADGQRDSGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMAG 451

Query: 436 IPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           + G+    +E   R  AI  AI     +D +V+ G+GHE++     G+  +  D  + RE
Sbjct: 452 MKGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDL-DDRVVARE 510

Query: 492 ILG 494
            L 
Sbjct: 511 ALS 513


>gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 481

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 210/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+   +    +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G +H+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
 gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
          Length = 481

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 125/497 (25%), Positives = 211/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR ++   +F A  G       F+  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVKEDTLFFA-KGAAFK-KEFLIS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI+QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AISQGLGWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+        +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVENQDHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMTIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKEAYPGDAAVAENYL 481


>gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
 gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
          Length = 481

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNFNDVTFDSICYDSRKAKDNSLFF-VKGAAFK-KEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI  G    V    Y +         + P++VV++ +K +SL A   YG   E +  LA 
Sbjct: 66  AIEHGLSWYVAEQDYEV---------DIPVIVVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILNQKHYPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQAVD 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K S A++   D     V+K                  I   K  +     ++    + + 
Sbjct: 234 KNSRAVVINSDMDYFSVLKEQVENQEHDFYGSQSDNQIENSKAFSFSATGKLVGDYDIQ- 292

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     + + +     VPGR E +   + G +++
Sbjct: 293 ------LIGHFNQENAVAAGLACLRLGASLEDIKKGIAT-TRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLDQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIE-MLNKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R +AI+ A+     + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSFIHHPVEKIADREQAIKAAMSVTSQELDAVIIAGKGADCYQIIN 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GIKEDYPGDAAVAERYL 481


>gi|50913697|ref|YP_059669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|139474340|ref|YP_001129056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|68052497|sp|Q5XDM7|MURE_STRP6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224788|sp|A2RG75|MURE_STRPG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|50902771|gb|AAT86486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|134272587|emb|CAM30854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 481

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +         +           L       ++     +  
Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQEHMFYGP-------LSDNQITTSQAFSFEAKG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I        +R +AI+ A+ +    +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I +  L
Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481


>gi|296140347|ref|YP_003647590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028481|gb|ADG79251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
          Length = 522

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 146/480 (30%), Positives = 220/480 (45%), Gaps = 23/480 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +  +  ++  + G +F  + G    G  F  +A+A GA A++  SA +     A +  + 
Sbjct: 42  SGATIRAQDARPGDLFCGVPGTSTHGARFAAEAVAAGAVAVLTDSAGAAVLAEAGV--DV 99

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+ D+ R  L   A+ +YG      + + G +G S   +    +    G +    G  
Sbjct: 100 PVLLHDDPRSVLGPAAAVIYGAPSTK-MTLVGITGTSGKTTTSFLVEAALGATQATTGLI 158

Query: 151 STISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            T+ +          LTTP    L    + +  QGVT   +E SSH L Q+R+ G +   
Sbjct: 159 GTVGTRIAGVDVPTSLTTPEGTALQGLFASMVEQGVTSAVMEVSSHALAQNRVGGTRFAV 218

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKM----RLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           G+FTNL +DH+DYH T + YF AK            P    A+I  DD +   +     +
Sbjct: 219 GAFTNLSQDHLDYHPTMEDYFAAKALLFVPDESGDGPVCEQAVICVDDEWGNRMADLRRD 278

Query: 263 AGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           AG     V + G            A   ++       G+ F     LPG + V NA +A 
Sbjct: 279 AGLPLVTVATTGPADWTAGAVSAHADGTQRFTLTGPGGQSFSATVGLPGAYNVANAALAL 338

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +    G+  A  +        VPGR + +          VDYAH   +L+ ++  +R  
Sbjct: 339 VVAHEAGVPLADAV-RGIGAVAVPGRVQRIDRGQ-DFLAVVDYAHKPAALDAVIATLRGQ 396

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
           T+GRI VV G GGDRD+GKRP+MG++A   A++ IVTDDNPR+EDP  IRA +  G    
Sbjct: 397 TAGRIAVVVGAGGDRDRGKRPLMGEVAARAAELVIVTDDNPRTEDPAAIRAAVRAGAEAV 456

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  E G+R  AI  A++     DV+++AGKGHE    + NG K    D D +   L
Sbjct: 457 PGGGEVREIGDRRAAITEAVDWARTGDVVLIAGKGHEAGQEI-NGVKHPFDDRDELAAAL 515


>gi|116332750|ref|YP_794277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis ATCC 367]
 gi|116098097|gb|ABJ63246.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus brevis ATCC
           367]
          Length = 504

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 118/513 (23%), Positives = 185/513 (36%), Gaps = 36/513 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   LI     +  + L    +Q  +     ++ DSR +QA  +FV   G       ++
Sbjct: 1   MKANQLIA--LLQEHDLLRNTTLQVDDTDFVGLTYDSRQVQANTLFVC-KGFNF-SVDYL 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +    Y +         + P+++V N RK LS  A++LY   P+N L V
Sbjct: 57  HSAIENGATAYLAEEDYGV---------SVPVILVKNVRKALS-LAAQLYFDFPQNDLFV 106

Query: 121 TGTSGKS--------SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            G +G          +         Q+  + S                 LTT     L K
Sbjct: 107 IGYTGTKGKTTSTYLTTNILSHAFPQQVAMFSTINHIVGPKPQDQYRAHLTTAESFDLFK 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAK 230
            +      G   + +E +S      R+ G+    G F N+  DHI  + H     Y   K
Sbjct: 167 EMRQAVDNGQKVLVMEVASQAYLLDRVYGLTFDVGIFLNISPDHIGVNEHPNFANYLFCK 226

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           M+L          A     D                          + +    A      
Sbjct: 227 MQLLLNSRNCIINAETDHFDEIYAAAKVSTDPEHIFTYGFNQAQASLSITSRQATLTDSH 286

Query: 291 VTISVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             ++V  +        +   +PG+F   N+  A       G   A +   L     +PGR
Sbjct: 287 FDLTVHDERLAALATTYDVSVPGDFNQSNSAAAILASHLAGAQVADMQYGLAH-TRIPGR 345

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E + T   G  +Y+DYAH   S+  +L  +       R+I V G  GD+ + +R    K
Sbjct: 346 MESITTKHHGT-VYIDYAHDWGSMNALLSFLHTQFPDHRVIAVLGSTGDKGEDRREGFAK 404

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQD 460
              D AD A +T D+P  EDP  I  EI   I            R  AI  AI      D
Sbjct: 405 ALNDYADAAYLTTDDPGHEDPMAIAREIDSHIDHTKVKTTIIAQRETAIAQAITTATNTD 464

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++V+AGKG +    +   +   + D  + ++++
Sbjct: 465 LVVLAGKGEDAYQKINGVDTPYASDPVVAQDVI 497


>gi|24380055|ref|NP_722010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus mutans UA159]
 gi|46577050|sp|Q8DST2|MURE_STRMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24378047|gb|AAN59316.1|AE014997_6 putative UDP-N-acetylmuramoylananine-D-glutamate-2,6-
           diaminopimelate ligase; UDP-MurNac-tripeptide synthetase
           [Streptococcus mutans UA159]
          Length = 483

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 115/493 (23%), Positives = 201/493 (40%), Gaps = 30/493 (6%)

Query: 8   YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +F E+I+     +     E   + +S DSR I+A  +F  + G       F+ +AI  
Sbjct: 14  NANFREIIDGKHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLEKAIES 71

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           G    V    Y +           P+++V+N +  + L A   Y    +    LA TGT 
Sbjct: 72  GLTFYVAEKDYQV---------GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTK 122

Query: 125 GKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ A F   I ++    +      T+        ++LTTP  + L K ++   + G+T
Sbjct: 123 GKTTAAYFAYHILKQGYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAVANGMT 182

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+ +E SS      R+ G+    G F N+  DHI      +          + LL K S 
Sbjct: 183 HLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLLKHSR 239

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +I         ++K             Y    I   K  +     ++    + +     
Sbjct: 240 YVIVNSQMNHFALIKEQVADQPHDFYGKYSDNQIINSKAFSFDLTGKLAGHYDIQ----- 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                        VAA L       S   ++       VPGR E +   + G +++VDYA
Sbjct: 295 ---LTGSFNQENAVAAALACLQLGASQTDIQKGIVQTTVPGRMEVLIQKN-GAKVFVDYA 350

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRS 422
           H  +SLE +L  +     G +I++ G  G++ + +R   G +     ++  I+T D+P +
Sbjct: 351 HNGDSLEKLLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTADDPNN 410

Query: 423 EDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEK 480
           EDP+ I  EI H I        +R +AI+ A+ +   + D +++AGKG +   I+     
Sbjct: 411 EDPQLISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIIKGKRT 470

Query: 481 KMSVDCDIIREIL 493
             + D ++ R+ L
Sbjct: 471 AYAGDIEVARKYL 483


>gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 117/508 (23%), Positives = 208/508 (40%), Gaps = 24/508 (4%)

Query: 3   LQDLIYKD--FPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           + DL+ ++  + E+I   +     P +    ++ ++S DSR +  G +F    G K +  
Sbjct: 7   ITDLLKENGLYKEIIIDGDWYYTVPEKAARAEVTDLSYDSRKVSDGTLFFC-KGLKFNP- 64

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  AI +GA A +        D       +TP ++V + +K +++ A   YG   E +
Sbjct: 65  EYLASAIKEGATAAISE--LVYTDKLDQEAQSTPQIIVTDVQKAMAVIARHFYGCPDEKL 122

Query: 118 --LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAK 172
             +  TGT GK++   F + I     G    Q              +  LTTP  + L +
Sbjct: 123 ELIGFTGTKGKTTSVYFTRHILAHEFGPVVGQFSSIDECVDGKNFIEAHLTTPESLDLFR 182

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +      G+ ++++E SS    + R+ G+    G F N+  DHI   +     F+  + 
Sbjct: 183 MMKEAVDNGMKYLAMEVSSQAYKKSRVYGLHFNIGVFLNISPDHISLVE--HPTFDDYLW 240

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +++      I+     Y + + ++AH  G ++++ G        +     H    V+
Sbjct: 241 CKSQIIVNSDTVILNRYMDYYELLAQKAHELGKKLITFGSDESDADYRYHGKDHGYFDVS 300

Query: 293 ISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              +   +       +      Y+  +AA    A   D         K   VPGR EF+ 
Sbjct: 301 THNDNLPEVTGEFRVMIPGHFNYSNALAAITVSAQLKDDTSDFAQGLKETKVPGRMEFLK 360

Query: 351 TNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            N+ G    VDYAH   SL E           GR+IVV G  G + + +R  +G+   + 
Sbjct: 361 NNA-GMVACVDYAHNYLSLSESFKFMKHEYPDGRLIVVIGAAGGKAESRRKDVGRALSEY 419

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD+AI+T ++   EDP  I   I   I       I   +R+ AI+ A EM    D + +A
Sbjct: 420 ADVAILTSEDNFFEDPHHIDETIKEHITNPNVKVIINVDRVAAIKQAFEMAKPGDAMFMA 479

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREIL 493
            KG E        +     D  + ++++
Sbjct: 480 AKGREQFMHEKGRDIPYVGDYQLSQKLM 507


>gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17570]
 gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 481

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMVIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|22537538|ref|NP_688389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae 2603V/R]
 gi|46577055|sp|Q8DYT2|MURE_STRA5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22534419|gb|AAN00262.1|AE014255_20 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 2603V/R]
          Length = 484

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 121/500 (24%), Positives = 212/500 (42%), Gaps = 31/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++    +F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  G    V  + Y           + P+++V++ +K +SL +   Y      +  
Sbjct: 64  LDSAITAGLSFYVSETDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      T+        + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 175 AVENQMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++         ++K             Y    I   K  + H K ++  + +
Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESKAFSFHVKGKLENTYD 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K       L G+F   NA+ A   C+ +G+    +   + +   VPGR E +   + G 
Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++  I+
Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI  A  + N K D +++AGKG +   
Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+       S D ++ ++ L
Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482


>gi|19745543|ref|NP_606679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS8232]
 gi|94987955|ref|YP_596056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94989829|ref|YP_597929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|25453128|sp|Q8P2B4|MURE_STRP8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224785|sp|Q1JN87|MURE_STRPC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224786|sp|Q1JID8|MURE_STRPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19747663|gb|AAL97178.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes MGAS8232]
 gi|94541463|gb|ABF31512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94543337|gb|ABF33385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 481

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +                  +  L       ++     +  
Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I        +R +AI+ A+ +    +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I +  L
Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481


>gi|290579966|ref|YP_003484358.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
 gi|254996865|dbj|BAH87466.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
          Length = 483

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 204/498 (40%), Gaps = 32/498 (6%)

Query: 3   LQDLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L++    +F E+I+     +     E   + +S DSR I+A  +F  + G       F+ 
Sbjct: 11  LKN--NANFREIIDGEHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLE 66

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           +AI  G    V    Y +           P+++V+N +  + L A   Y    +    LA
Sbjct: 67  KAIESGLTFYVAEKDYQV---------GIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLA 117

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            TGT GK++ A F   I ++    +      T+        ++LTTP  + L K ++  +
Sbjct: 118 FTGTKGKTTAAYFAYHILKQGYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAA 177

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + LL
Sbjct: 178 ANGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLL 234

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K S  +I         ++K             Y    I   K  +     ++    + +
Sbjct: 235 LKHSRYVIVNSQMNHFALVKEQVADQPHDFYGKYSDNQIVNSKAFSFDLTGKLAGHYDIQ 294

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                             VAA L       S   ++       VPGR E +     G ++
Sbjct: 295 --------LTGSFNQENAVAAALACLQLGASQTDIQKGIVQTTVPGRMEVL-VQKNGAKV 345

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTD 417
           +VDYAH  +SLE +L  +     G +I++ G  G++ + +R   G +     ++  I+T 
Sbjct: 346 FVDYAHNRDSLEKLLSVVEEHQKGTLILILGAPGNKGESRRADFGYVINAHPELQVILTA 405

Query: 418 DNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIV 475
           D+P +EDP+ I  EI H I        +R +AI+ A+ +   + D +++AGKG +   IV
Sbjct: 406 DDPNNEDPQLISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKGADAFQIV 465

Query: 476 TNGEKKMSVDCDIIREIL 493
                  + D ++ R+ L
Sbjct: 466 KGKRTAYAGDIEVARKYL 483


>gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 481

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 209/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 EKSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI + I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|260905300|ref|ZP_05913622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacterium linens BL2]
          Length = 520

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 134/518 (25%), Positives = 219/518 (42%), Gaps = 37/518 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++  L+                   ER++  VS DSR +  G ++ A+ G    G  F 
Sbjct: 1   MRISQLLPAA--------PGTVHGDPEREVGGVSHDSRTVSPGQLYAALPGANVHGAKFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKH-PEN 116
           P  + +G  AI+  +A      +A      +    L+V++ R  L   ++ +YG      
Sbjct: 53  PDLMERGITAILTDAAGWDMISAAVDPQTLAEVTGLIVEHPRSVLGFVSAAVYGTSVSPQ 112

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALS 175
           ++ VTGT+GK++    V  + +  G  +  IG  +T+ +  ++    TTP    L    +
Sbjct: 113 LIGVTGTNGKTTTTYLVDGMLEALGHRTGVIGTVATLIAGVREPSVRTTPEAPELHALFA 172

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            + +  V   ++E SSH L QHR+DG       FTNL +DH+D+H +   YF+ K +LF 
Sbjct: 173 KMRAADVDTCAMEVSSHALSQHRVDGAHFAVSGFTNLSQDHLDFHNSMDEYFDVKAQLFT 232

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH------NAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                 +  ++            +        +    +      G    +  +    ++ 
Sbjct: 233 RTFSDAAVIVVEDRWGEKMVEAAQVPVRTLGRDDRSELRIEHTPGVSDFILHLGGSADET 292

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG-RFEF 348
               S    DF+          +  A +A     AIG   +  +    ++  V G R E 
Sbjct: 293 IALRSPLPGDFNVTNTALAAAMLLEAGIAVSDLNAIGRTFSASVPGRMEIIDVSGPRAEG 352

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                R  R  VDY+HT +++E  L ++    S  +++VFG GGDRD+GKR  MG+ A  
Sbjct: 353 QTHPERLPRAIVDYSHTPDAIEKALASLHA-DSEELVIVFGAGGDRDRGKRYGMGQAAAR 411

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--------- 459
            AD+ ++TDDNPR+EDP  IRA I  GI    E  N    ++  IE+  +          
Sbjct: 412 GADVIVLTDDNPRTEDPNLIRAAIREGIDA--EISNGRARVKKVIEVAERGSAIDEAIAA 469

Query: 460 ----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 +++AGKGHET      G      D    R  L
Sbjct: 470 AEASTTVLIAGKGHETGQS-AGGVVTDFDDRSRTRSAL 506


>gi|323487947|ref|ZP_08093203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
 gi|323398371|gb|EGA91161.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
          Length = 499

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 117/478 (24%), Positives = 210/478 (43%), Gaps = 21/478 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +  +S  +     F  + G   DGHL+I +AIA GA  I+ S+   L +++     +
Sbjct: 24  FSSIEYNSTLVVQDCAFFCVPGENTDGHLYIGEAIANGATTIIGSNQLLLAEYAKQHP-D 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENIL--AVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               VV N R+ L+  +   Y    + ++   VTGT+GK++ A++V  +    G+    I
Sbjct: 83  LSFAVVPNVREALAYLSDFFYRSPQKELIKVGVTGTNGKTTTATYVYNLFNLLGIGCGFI 142

Query: 148 GPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           G T  +          +  TTP    L K  +    +G   V++E SS  LDQ R++GI+
Sbjct: 143 GTTGILRMDGKIPFYKSTPTTPISSDLHKIFARFVEEGDRAVAMEVSSIALDQMRVEGIR 202

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--EVMKRAH 261
                 TN+  +H++YH+  + Y  +K+      L K+S A +   D      E+++   
Sbjct: 203 FDVAIHTNISEEHLEYHKIFEHYLQSKLM-----LFKQSKAAVVNVDDKGMAKEILEVIS 257

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  +    G  +      +     +  +  +G+ +    PL GE+   N   A G 
Sbjct: 258 YPHLTYSNRVDSGADLIWTACESSDTGLKFDLYYKGERWPIHVPLFGEYNAANLTAAIGS 317

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  G +   ++  L K+  V GRF+ +       ++ +DYAHT  +L  +L  ++ ++ 
Sbjct: 318 ALLSGQNIEAIVTVLPKMSQVEGRFQVI-QGPDNRKVILDYAHTPVALSAVLNEVKKLSH 376

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---- 437
            R+I +    G RD  K P M K A   AD+ +VT D+P   +P  +   ++ G      
Sbjct: 377 NRLIALIAGIGIRDFSKMPKMAKAAEGKADVLVVTVDHPGDNEPSVVIDAVLKGFTVPYK 436

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              I   +R EA+  A++    +D+++++  G      +  GE     D  II E   
Sbjct: 437 QQVITANSRREAVLAALKESGPEDIILLSS-GSINGAQIVKGEYIPHSDEAIIEEFFS 493


>gi|227497585|ref|ZP_03927808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
 gi|226832954|gb|EEH65337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
          Length = 549

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 150/517 (29%), Positives = 237/517 (45%), Gaps = 36/517 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL +    E     +       +  I+ VS DS  +  G +FVA+ G +  G  F  Q
Sbjct: 22  LADLAHTLSLEAAGDPA---ADLGQVLIHGVSVDSGDVAPGELFVALPGFRRHGAEFAAQ 78

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA A++  +  + +  ++  +   P+L   + R  +   A+ +Y  HP   L  T 
Sbjct: 79  AVAGGAVAVLTDADGATRLGASLGQ--VPVLTHPDPRAVVGPLAAEVY-HHPATHLTTTA 135

Query: 123 TSGKSSVASFVQQICQ---RSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLS 178
            +G +   +    +              G    ++ + + ++  TT     L + ++   
Sbjct: 136 VTGTNGKTTTTYFLQSILAAHLGQCMIAGTVELSVGTQSVESPRTTVEAPVLQRMMALAV 195

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +GV   S+EASSH +  HRL G  +    FTNL RDH+D+H T + Y  AK RLF    
Sbjct: 196 EEGVKAASLEASSHAIVLHRLGGTVVDVAGFTNLQRDHLDFHHTMEEYLEAKARLFTP-- 253

Query: 239 PKESPAIIYADDAYSKEVMKR--------------AHNAGCRVLSVGYQGKFIHLKKVCA 284
                A+I  DD +   + +R                       + G Q     +K    
Sbjct: 254 EHARRAVICVDDRWGAALAERVADRGAVPVDRVRAYPAQDSEDPAQGAQWWVSQVKASMT 313

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                      +G+  + L PLPG   V NA +A  + +  G+     ++ L   H +PG
Sbjct: 314 QAATTFTLHGPDGEQIEALCPLPGLVNVQNAALALVMALRAGVAQDTAVQALAHAHNIPG 373

Query: 345 RFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           R + +           VD+AHT  ++++ LK +R IT GR+IVVFG  GDRDQGKRP++G
Sbjct: 374 RMQRISQRDGRRGTCIVDFAHTPEAMDLALKAVREITPGRLIVVFGSDGDRDQGKRPLLG 433

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGN-RIEAIRTAIEM 455
           ++A  LAD+ +VTD+NPRSEDP+ IR  ++ G+           E    R +A+R  +E+
Sbjct: 434 QVAARLADVLVVTDENPRSEDPQLIRDAVLAGVRSVRPGLEDVEEITTWRGDAVRRGVEL 493

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              QD ++V GKGHE    +  GE     D  ++RE 
Sbjct: 494 CGPQDTVIVTGKGHEPFLEMA-GEFIRYNDAPVMREA 529


>gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
 gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
          Length = 554

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 141/519 (27%), Positives = 214/519 (41%), Gaps = 66/519 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIP------------QA--IAQGAEAIVVSSAYS 78
           +S+DSR + AG  F+A  G   DG  F+P             A  +A  A+A  + ++  
Sbjct: 29  LSTDSRRVGAGDGFIAWPGAARDGRAFVPAALAQGAAACLVDAPGLAAFADAYGLDASAR 88

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI 136
            +  +A           +  +      A+  YG+  +   +LA+TGT+GK+S A ++ Q 
Sbjct: 89  AERIAAYAGP-------EGLKAASGPIAANYYGQPSQALEVLAITGTNGKTSTAWWLAQA 141

Query: 137 CQRSGL--SSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                       IG          +       LTTP P+ L ++L  L+ QG +  ++EA
Sbjct: 142 LSALRPTAPCAMIGTLGVGRVTATAEEIVGTGLTTPDPVLLQQSLRRLADQGFSACALEA 201

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS G+ + RLDG  +    FTN  +DH+DYH +  AY+ AK  LFE      +   +   
Sbjct: 202 SSIGIVERRLDGTHIRVALFTNFTQDHLDYHGSMAAYWQAKAALFEWPQLPAAVVNVDDP 261

Query: 250 D--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                ++ +  RA                +    +    +  +  I    +         
Sbjct: 262 QGAELARTLAARAGLDLWTCSLRADSAARLRANDIRMTAHGLRFEICEGAQTTSLQARTL 321

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-------------- 353
           G + V N L        +G   A  +    +LH VPGR EF                   
Sbjct: 322 GAYNVSNLLGVIATLRCLGFALADAVAACGELHPVPGRMEFFSGGMSAAPGRPKQANIPS 381

Query: 354 -------------RGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQG 397
                              VDYAHT ++L  IL+ +R +     GR+  VFGCGGDRD  
Sbjct: 382 GGSEDTAVPSVGGNTPLAVVDYAHTPDALAQILQALRPLAAQRGGRLWCVFGCGGDRDPV 441

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIE 454
           KRP+MG+ A   AD  ++T DNPRSE P+ I  +I  G+P       + +R  AI  A+ 
Sbjct: 442 KRPLMGEAAARHADRVVLTSDNPRSEPPQAIIEQIQRGLPPGCDAWVEPDRAVAIARALA 501

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                DV++VAGKGHE       G ++   D   +   L
Sbjct: 502 AAQAPDVVLVAGKGHEDYQETA-GVRRPFSDRQQVSAAL 539


>gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 516

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 129/482 (26%), Positives = 213/482 (44%), Gaps = 25/482 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +     D+R +  G +FVA+ G    G  F   A ++GA A++          +     +
Sbjct: 40  VRGAVIDNRAVLGGELFVAMPGFHVHGAKFAADAASRGAGAVLSDPEG----MAFLTDLD 95

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P ++V +        A+  + +  +      VTGT+GK++    ++ +  R G  S  +
Sbjct: 96  IPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTYLLRHLLHRVGHLSSLV 155

Query: 148 GPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +        +TTP    L    +    + V H+ VE SSH L   R+D +    
Sbjct: 156 GTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVSSHALAMGRVDPLHFAC 215

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGC 265
             FTNL +DH+DYH T + YF  K  LF +        I+         E ++R+     
Sbjct: 216 VGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGVWGQRLAEQLERSGQHDF 275

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
             LS+  +      K +       ++ +   +GK+      +PG F   NA +A  +   
Sbjct: 276 VTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMPGTFNAINAALAIVMVVT 335

Query: 323 ------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                   +  D    L        VPGR E +       R+ VD+AH  +S +++L  +
Sbjct: 336 GLSPSPRQLDGDILRHLTVNPIRLDVPGRMELL---CEEPRVIVDFAHNPDSTKVLLDTM 392

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R  T GR+++V G  G RD GKRPI+G+IA +LAD   VTD +   E+P  IR +++ G+
Sbjct: 393 RISTKGRLLLVMGADGQRDPGKRPILGQIAAELADFTYVTDGDIHEEEPSGIRRDVMAGM 452

Query: 437 PGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            G+    +E   R  AI  AI     +D +V+ G+GHE++     G+  +  D  + RE 
Sbjct: 453 KGYEEKFVEVAPREVAIERAILDARPEDTVVITGRGHESIMFTPEGQYDL-DDRVVAREA 511

Query: 493 LG 494
           L 
Sbjct: 512 LS 513


>gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 481

 Score =  234 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFRFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
 gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
          Length = 481

 Score =  234 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 210/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           AI QG    V    Y +           P+++V++ +K +SL A   YG   E   ILA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +   ++      T+   +    +  +TP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQAVK 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G +H+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRSHLVMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|306827935|ref|ZP_07461202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304429854|gb|EFM32896.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 481

 Score =  234 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDADG-YHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +                  +  L       ++     +  
Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEANG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I        +R +AI+ A+ +    +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I +  L
Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481


>gi|295093595|emb|CBK82686.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 507

 Score =  234 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 108/512 (21%), Positives = 201/512 (39%), Gaps = 41/512 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++ +      + ++ +    ++   + ++ +S+ +  G  FV   G       ++  
Sbjct: 10  LLDILSRQ-----DLITEYSEDCKDITPSHITINSKDVVPGTFFVC-KGASFK-EDYLKS 62

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AIAQGA   +    Y           + P ++V++ RK ++L A   +G   +N+  V  
Sbjct: 63  AIAQGAIVYLSQQKYD--------DVDIPYIIVNDIRKAMALAARWFFGNPGDNMTKVGI 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI----SSFAQDNRLTTPSPIYLAKALSYLS 178
           T  K                +  +    ST      +   +  LTTP PI L        
Sbjct: 115 TGTKGKTTVTFVMKDILDKYTDNRCSAFSTHEIDVGTKVFETTLTTPEPIELQTYFDMAV 174

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G TH  +E SS  +  +R+ G     G FTN+  DHI    T+ A     +      L
Sbjct: 175 DEGCTHCIMEVSSQAMKMNRIYGEHYKVGVFTNIDYDHIS--PTEHASMEDYLGCKVSFL 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVL---------------SVGYQGKFIHLKKVC 283
            +    ++Y+D  Y + +     +    V                       F  +    
Sbjct: 233 KQCDNVVLYSDTRYFETIYNEVRDKHVVVYGSKESIEKLMSRDDDFFEKDTDFASIHNED 292

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              +     +   G++  +   L G++ V N + A    + IGI +  +   +  ++V P
Sbjct: 293 LTDHNSYFELIYGGENRAYNTNLIGDYNVENIVAAIISSLLIGIPNDQIRSSIRDVYV-P 351

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
           GR +            +DYAH   S+  + + ++     + I VVFGCGG+R + +R  M
Sbjct: 352 GRLQVYHWK--DRTFMIDYAHNYISMYRLYEMVKKTMKPKSITVVFGCGGERYKKRREDM 409

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDV 461
           G++A   AD  ++T ++P  E  E+I  EI   I        +R +A+  A++     ++
Sbjct: 410 GRLAEQYADKVVLTMEDPGFESCEEICKEIKQYITKPCYIIVDREQALTRALDEAQPGEL 469

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++  GKG E+   +     +   D  +I   L
Sbjct: 470 VITTGKGIESTQRINGTFVQCHSDAQVIEHWL 501


>gi|89902199|ref|YP_524670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
 gi|89346936|gb|ABD71139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
          Length = 538

 Score =  234 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 152/513 (29%), Positives = 226/513 (44%), Gaps = 55/513 (10%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   + +DSR +Q G  F+A  G   D   F+  A+A GA A +V    +     A   
Sbjct: 17  RVTGTLQTDSRKLQPGDGFIAWPGAAADARQFVASALASGAGACLVERLGA----EAYAF 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG---- 141
           S+  +    N +    L A+  + +  +   +LAVTGT+GK+S A ++ Q          
Sbjct: 73  SSDKVAAYANLKAASGLIAAAYFDQPSQQLDVLAVTGTNGKTSTAWWLAQALSNLKLVTP 132

Query: 142 LSSFQIGPTSTISSFAQDN----------------------RLTTPSPIYLAKALSYLSS 179
           +    +G     +     +                       LTTP P+ L +AL     
Sbjct: 133 IPCGLVGTLGIGTPPPPASGQPPVGLVAAHGADPLAGMVATGLTTPDPVLLQQALRRFVD 192

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +G    ++EASS GL + RL+G  +    FTN  +DH+DYH    AY+  K  LF+   P
Sbjct: 193 RGFQACALEASSIGLQEQRLNGTHIRTAIFTNFTQDHLDYHGAMAAYWQVKASLFQW--P 250

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEG- 297
               A+I  DD    E+ +        V +V    +       +       + T+   G 
Sbjct: 251 GLQSAVINIDDPQGAELAETLRGKLLDVWTVSCVAEARLQACDIVHDAPGLRFTVLEHGP 310

Query: 298 ----------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                     +       L G + V N L        +G+  A V+     L  VPGR E
Sbjct: 311 DGANGPGGAGQRHVLQTRLIGSYNVANLLGVMAAMRCLGVPLAAVVASCADLTAVPGRME 370

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGK 404
             G   +     VDYAHT ++L   L+ +R +     GR+  VFGCGGDRD  KRP+MG 
Sbjct: 371 CWGAPGQPL-AAVDYAHTPDALGKALQALRPLADQRGGRLWCVFGCGGDRDTAKRPLMGA 429

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDV 461
           IA   AD  +VT DNPRSE P+ I ++I+ G+ G+     + +R  AI  AI     QDV
Sbjct: 430 IAASHADCVVVTSDNPRSERPDAIISQILLGLTGYPALTVEPDRARAIAQAIAQAAPQDV 489

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           L++AGKGHE    V  G++    D + +R  LG
Sbjct: 490 LLIAGKGHEDYQEVA-GQRLPFSDAEQVRRALG 521


>gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 481

 Score =  234 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 213/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++    +F E+I++   F   +R     ++S DSR + A  +F  + G+      F+ +
Sbjct: 9   NILKNDYNFREIIDKGQYF-YHYRNLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G +  V  + + +           P+++V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVESGLQFYVSETDFEVT---------IPVILVNDVKQAMSLLAMEFYGNPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I Q+S   +      T+        + LTTP  + L K ++    
Sbjct: 117 TGTKGKTTSAYFAYHILQQSHKPALLSTMNTTLDGEHFFKSTLTTPESLDLFKMMATAVE 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++   +    EV+     +            +         H++     +     
Sbjct: 234 ENSRAVVVNSEMDHFEVLAEQVAS-------MEHDFYGQHSDNQIHHSQAFSFETSGILT 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   L G F   NAL A+  C+ +G   + +         VPGR E +     G +++
Sbjct: 287 EKFDIQLIGRFNQENALAASLACLRLGATISDIK-KGIAATRVPGRMEVLTQ-QNGAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  ++    GRI++V G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLANLLSVVQEHQKGRIVLVLGATGNKGESRRKDFGLLINQHPELMVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+ A+ +   K D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPIAIAKEIASYISFDVDMIADREEAIKKALGLTSKKGDAVILAGKGADCYQIIN 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  I  + L
Sbjct: 465 GKKANYPGDYAIAEKYL 481


>gi|15674533|ref|NP_268707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71910139|ref|YP_281689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS5005]
 gi|21362717|sp|Q9A196|MURE_STRP1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13621637|gb|AAK33428.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes M1 GAS]
 gi|71852921|gb|AAZ50944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS5005]
          Length = 481

 Score =  234 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDADG-YHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +                  +  L       ++     +  
Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I        +R +AI+ A+ +    +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I +  L
Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481


>gi|77405779|ref|ZP_00782864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
 gi|77175636|gb|EAO78420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
          Length = 484

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 119/500 (23%), Positives = 212/500 (42%), Gaps = 31/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++    +F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  G    V    Y +         + P+++V++ +K +SL +   Y      +  
Sbjct: 64  LDSAITAGLSFYVSEIDYGV---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      T+        + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++         ++K             Y    I   +  + H K ++  + +
Sbjct: 232 LLMENSKAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESQAFSFHVKGKLENTYD 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K       L G+F   NA+ A   C+ +G+    +   + +   VPGR E +   + G 
Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++  I+
Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI  A  + N + D +++AGKG +   
Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+       S D ++ ++ L
Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482


>gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 481

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFRFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQAGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|325109906|ref|YP_004270974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
 gi|324970174|gb|ADY60952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
          Length = 504

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 217/488 (44%), Gaps = 24/488 (4%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              ELI Q S            ++++ SR      +FVA+ G+  +   ++ QA AQGA 
Sbjct: 13  VLRELIPQASYV--GNANIVFRDIATHSRSCNRQTLFVALSGSHREEGAYLRQAAAQGAA 70

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKS 127
            I+     S            P  +V N R+   L    L G+  E      VTGT+GK+
Sbjct: 71  GILTDFPLSDLAT--------PQCIVPNVRRTYGLLCQSLAGRPAEQLRTFGVTGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           +V   ++ I + +  +   +G           +   LTTP     A+ +  +   G T  
Sbjct: 123 TVTWMLRSIVKAANENCGLLGTIEYSDGCHTPEPATLTTPDAAVTAQWMRRMVQAGATAA 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SSH +DQ RL G+ L  G  TN+  DH+DYH +   Y          LL  ++P +
Sbjct: 183 AIEVSSHAIDQDRLSGVSLAGGIITNITHDHLDYHGSLSKYA-EVKARIANLLQDDAPLV 241

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   + ++         V         I +++           +S   +      P
Sbjct: 242 VNGDDCNIRNLLPHLPPETITVGFDKRNSYRIEIQEQTLQGT--AFRLSPGTEGAVLRCP 299

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   VYNA  AA L  A G     +   L  L   PGR + V    +    +VDYAHT
Sbjct: 300 VPGRHNVYNAAFAAVLAQAAGYSLESISAGLASLVPPPGRLQPV-ETCQPFSCFVDYAHT 358

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +++   L+++R++T GR+I +FG GG+RD+ KRP M + A   ADI ++T DN R E  
Sbjct: 359 PDAIAQTLQSLRSVTKGRLICLFGAGGERDREKRPRMARAAEQ-ADIVVLTADNSRREPT 417

Query: 426 EKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            +I  EI  G     P      +R +AI+ A+++    D +++ GKGHE    +  G+++
Sbjct: 418 AQILEEIQAGFSDAAPEVFVNADRSQAIQLAVKLAEPGDCVLILGKGHEKTQEIA-GQRR 476

Query: 482 MSVDCDII 489
              D   +
Sbjct: 477 DFDDVAEV 484


>gi|115350512|ref|YP_772351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
 gi|115280500|gb|ABI86017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
          Length = 512

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 143/475 (30%), Positives = 216/475 (45%), Gaps = 31/475 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R ++AG +F+   G   DG     FI  A+A+GA A++          +  +   
Sbjct: 31  LHADTRSLRAGDVFL---GYAVDGADNRAFIADAVARGAAAVLYQPEGLAAAPAVPVALA 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P        +     AS  YG   +++  + VTGT+GK+S   ++             I
Sbjct: 88  VPA-----LDQLAGEIASGWYGDPSDSMLAIGVTGTNGKTSCTQWIAAALTALHQPCAVI 142

Query: 148 GPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   +           TTP    L ++L+ L   G   V++E SSH L Q R++G     
Sbjct: 143 GTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAMEVSSHALHQGRVNGTAFDI 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RA 260
             FTNL +DH+DYH T  AY  AK +LF         A++  DDA  + +++      R 
Sbjct: 203 AVFTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRT 260

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G          + +    V A        +     D D      G F V N L   G
Sbjct: 261 IAYGIGDAQAPDADRELVALDVRATATGTAFHLRSSWGDADVEVGTLGAFNVSNLLAVLG 320

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRT 378
             +A  +     +  + +L  V GR + +G   +       +DYAHT ++LE  L  +R 
Sbjct: 321 SLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRP 380

Query: 379 I---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP++I  ++I G
Sbjct: 381 IAAARGGRLVCMFGCGGDRDATKRPLMGVIAERLADEVVVTSDNPRSEDPQRIIDQVIAG 440

Query: 436 I---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           +          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 441 MTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 494


>gi|76797685|ref|ZP_00779954.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
 gi|76586979|gb|EAO63468.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
          Length = 484

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 120/500 (24%), Positives = 211/500 (42%), Gaps = 31/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++    +F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  G    V    Y           + P+++V++ +K +SL +   Y      +  
Sbjct: 64  LDSAITAGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      T+        + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 175 AVENQMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++         ++K             Y    I   K  + H K ++  + +
Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESKAFSFHVKGKLENTYD 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K       L G+F   NA+ A   C+ +G+    +   + +   VPGR E +   + G 
Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++  I+
Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI  A  + N + D +++AGKG +   
Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+       S D ++ ++ L
Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482


>gi|226325275|ref|ZP_03800793.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
 gi|225206623|gb|EEG88977.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
          Length = 505

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 103/500 (20%), Positives = 185/500 (37%), Gaps = 26/500 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
                 L      +     E+ +  ++ DSR +  G +F+   G       ++  AI +G
Sbjct: 10  ANLLQNLRMMKEFYSNGEEEKNVGYLTYDSREVTEGTLFIC-KGAAFK-AEYLDAAIEKG 67

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A V    Y  ++       + P  +VD+ RK +   A +     P   L +TG  G  
Sbjct: 68  AIAYVSEVKYETKE-------DVPYFLVDDIRKAMPPLAEKF-NNAPWKKLTITGIGGTK 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTS---------TISSFAQDNRLTTPSPIYLAKALSYLS 178
             ++    +           G                  +++ +TTP  + L + L +  
Sbjct: 120 GKSTSAYYMKAIVDDYMEATGGKESAVLSSIDIYDGVIKKESHITTPESVELQEHLRHAV 179

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+T   +E SS  L  +R+D ++   G F N+  DHI   +          +L     
Sbjct: 180 ESGITFAEMEVSSQALKYNRVDNMQFDVGIFLNISEDHISPIEHPDFEDYFSSKLKIFGK 239

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +     + A D   + + +          S       ++  ++    ++    +  E  
Sbjct: 240 SRYGVVNMDA-DFADRILKESKVCEKVLTFSTKNPEADVYGYEIQKDGHETVFMVKTELF 298

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D +F   +PG F V NAL      I + I     +          GR E  G+  +    
Sbjct: 299 DEEFRLTMPGLFNVENALAVIAASILLEIPKE-YMHSGLLRARSSGRMELYGSADKNLIA 357

Query: 359 YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            VDYAH   S E +  +I+       I+ +FGC G +   +R  +G +A   A    +T 
Sbjct: 358 VVDYAHNKLSFEKLFSSIKDEYPDYNIVSIFGCPGKKAFIRRRDLGTVAGQYAKKVYLTA 417

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           ++P  E  E+I  EI   +      +    +R EAI+ A++    + + ++ GKG+ET  
Sbjct: 418 EDPGYEPVEQISKEIAQYVEAQNCPYAMIEDRGEAIKAAMDEAEGKTIFLITGKGNETRQ 477

Query: 474 IVTNGEKKMSVDCDIIREIL 493
                      D   ++E L
Sbjct: 478 KYGCEYLDCKSDTQYVKEYL 497


>gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 525

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 121/490 (24%), Positives = 224/490 (45%), Gaps = 29/490 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
               +KIN +S DSR+     +FV + G   DGH F+ +AIA+GA A++     ++ +  
Sbjct: 37  GSPSQKINSISYDSRNAGPQSVFVCMGGENHDGHTFLEEAIAKGA-AVLAGENAAILEEF 95

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
           +        L  ++ R FL+  +   +G+  E    + +TGT+GK++VA+FV+ +    G
Sbjct: 96  SRKFPELTFLQTEDARAFLAQLSIIFHGRIHEKIHTVGITGTNGKTTVAAFVKSLMTALG 155

Query: 142 LSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + S  IG    +SS        +  TTP    L    +  + +G    ++E SS  ++Q 
Sbjct: 156 IPSGSIGTNGVLSSMGPVSFVQSTPTTPEASDLHAIFADFAKRGDQLAAMEVSSVAIEQQ 215

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EV 256
           R  GI       TNL  +H+++H+T + Y  AK++LF     +   A++  DD     ++
Sbjct: 216 RTAGINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLFR----QAKRAVVNLDDEGMGADI 271

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K    +             +    +   ++     + +    +    P+ G + V N L
Sbjct: 272 IKDFQGSLLTYSLKKDSAADVKASNIRVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLL 331

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    + +G     ++E L ++    GRFE +       +I +DYAHT  +L+ +LK  
Sbjct: 332 SAICTAMHLGFTIGQIIEALPRVENPSGRFEVLK-EFGRRKIIIDYAHTPVALKSLLKEA 390

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           + +   R+IV+    G RD+ K P M +   + AD  IV+ D+P   DP ++   ++ G 
Sbjct: 391 KKLPHKRLIVMITGIGIRDKEKMPQMAQAVENQADQVIVSVDHPGFLDPWEVVGHVMKGF 450

Query: 437 P-----GFIEKGNRIEAIRTAIEMLNKQDVLVVA-----GKGHETVHIVTNGEKKMSVDC 486
                   +++  R + +  A+ + ++ D++++      G       IV  GEK    D 
Sbjct: 451 SNPRAGNILQEPTRRDGVLAALSVSDEDDLILLTSGCING-----AQIVK-GEKIPHSDK 504

Query: 487 DIIREILGLI 496
           +II+E    +
Sbjct: 505 EIIQEFFRNL 514


>gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 481

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    +    Y +           P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYIAEKDYEV---------GIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISLDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFRFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|25011503|ref|NP_735898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae NEM316]
 gi|77413369|ref|ZP_00789563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
 gi|46577059|sp|Q8E4E0|MURE_STRA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24413041|emb|CAD47120.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160611|gb|EAO71728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
          Length = 484

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 120/500 (24%), Positives = 211/500 (42%), Gaps = 31/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++    +F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  G    V    Y           + P+++V++ +K +SL +   Y      +  
Sbjct: 64  LDSAITAGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      T+        + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++         ++K             Y    I   +  + H K ++  + +
Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESQAFSFHVKGKLENTYD 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K       L G+F   NA+ A   C+ +G+    +   + +   VPGR E +   + G 
Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++  I+
Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI  A  + N K D +++AGKG +   
Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+       S D ++ ++ L
Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482


>gi|94993717|ref|YP_601815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|166224787|sp|Q1J890|MURE_STRPF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94547225|gb|ABF37271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 481

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLD-SDGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +                  +  L       ++     +  
Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I        +R +AI+ A+ +  + +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEDISQEIASHIARPVEIISDREQAIQKAMSLCQEAKDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I    L
Sbjct: 462 IVKGQQVAYAGDLAIATHYL 481


>gi|21909820|ref|NP_664088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS315]
 gi|28896487|ref|NP_802837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes SSI-1]
 gi|25453113|sp|Q8K8H6|MURE_STRP3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21904006|gb|AAM78891.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptococcus pyogenes
           MGAS315]
 gi|28811741|dbj|BAC64670.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,
           6-diaminopimelate ligase [Streptococcus pyogenes SSI-1]
          Length = 481

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDA-DEYHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +                  +  L       ++     +  
Sbjct: 231 LLMENSRAVVINSVMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I        +R +AI+ A+ +    +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I +  L
Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481


>gi|71902980|ref|YP_279783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS6180]
 gi|123640434|sp|Q48V28|MURE_STRPM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71802075|gb|AAX71428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS6180]
          Length = 481

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 117/500 (23%), Positives = 213/500 (42%), Gaps = 32/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDADG-YHYHYQGFSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMVFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +                  +  L       ++     +  
Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I        +R +AI+ A+ +    +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I R  L
Sbjct: 462 IVKGQQVAYAGDLAIARHYL 481


>gi|322390040|ref|ZP_08063576.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321143247|gb|EFX38689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 481

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 119/491 (24%), Positives = 209/491 (42%), Gaps = 30/491 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           ++F E++     +         + +S DSR + A  +F  + G       ++ QAI+ G 
Sbjct: 15  QNFREVLVNGEYY-YHLEGTSFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
              V    Y +           P ++V++ ++ +SL A   YG   +   +LA TGT GK
Sbjct: 72  GFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A F   I ++S   +      T+        + LTTP  + L   ++   +   TH+
Sbjct: 123 TTAAYFAYHILEQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFSMMAEAVANDRTHL 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS      R+ G+    G F N+  DHI      +          + LL K S A+
Sbjct: 183 IMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMKNSQAV 239

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +   D    +V+                   I   K  +     ++  + + +       
Sbjct: 240 VINSDMDHFQVLADQVANQDHDFYGSQSENQIETSKAFSFSATGKLAGNYDIQ------- 292

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F   NA+ A   C+ +G     + + + K   VPGR E +   + G ++++DYAH 
Sbjct: 293 LIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRMEVLTQKN-GAKVFIDYAHN 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424
            +SL+ +L  + T  +G I +V G  G++ + +R   G +  D  +I   +T D+P  ED
Sbjct: 351 GDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYED 410

Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKM 482
           P  I  EI   I   +E   +R +AI+ A+ M    +D +++AGKG +   IV   +++ 
Sbjct: 411 PLAIAEEISSYITRPVEKIADREQAIQVAMAMTSKPEDAVIIAGKGADCYQIVNGVKEEY 470

Query: 483 SVDCDIIREIL 493
             D  I    L
Sbjct: 471 PGDAAIAERYL 481


>gi|209558880|ref|YP_002285352.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540081|gb|ACI60657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus pyogenes NZ131]
          Length = 481

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 212/500 (42%), Gaps = 32/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E ++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREGLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E +  
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +                  +  L       ++     +  
Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   +   
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH-A 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +++VDYAH  +SLE +L  +    +G+++++ G  G++ + +R   G++     ++  I+
Sbjct: 342 KVFVDYAHNGDSLEKLLSVVEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVIL 401

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVH 473
           T D+P  EDPE I  EI   I        +R +AI+ A+ +    +D +++AGKG +   
Sbjct: 402 TADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQ 461

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           IV   +   + D  I +  L
Sbjct: 462 IVKGQQVAYAGDLAIAKHYL 481


>gi|329117147|ref|ZP_08245864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326907552|gb|EGE54466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 483

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 119/498 (23%), Positives = 206/498 (41%), Gaps = 32/498 (6%)

Query: 5   DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +L+   K+F E++++ + +   +     + ++ DSR +    +F A  G       ++  
Sbjct: 9   ELLKEDKNFREVLDKENYY-FNYSALTFSNLTYDSRKVDMSTLFFA-KGAAFK-AEYLES 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI  G  A V    Y +           P ++V + +K +++ A   YG   + +  LA 
Sbjct: 66  AIKLGLTAYVSEVDYQV---------GIPAIIVTDIKKAMAIIAKDFYGNPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I Q S   +      T+        ++LTTP  + L + +S +  
Sbjct: 117 TGTKGKTTAAYFAYNILQESHKPAMLSTMNTTLDGKTFFKSQLTTPESLDLFQMMSTIVD 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGMTHLIMEVSSQAYLVERVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D    +++               +  F   +    I N Q  T S  GK 
Sbjct: 234 ENSRAVIINSDMDHFDILAEQVA--------NQEHDFYGSQSENQILNSQAFTFSANGKM 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                             AAGL           ++       VPGR E +   S G +++
Sbjct: 286 AGDYDIQLIGKFNQENATAAGLACLRLGADLTDIKQGIARTSVPGRMEVISHPS-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDD 418
           VDYAH  +SLE ++  +     G I ++ G  G++ + +R   G++  +       +T D
Sbjct: 345 VDYAHNGDSLEKLVTVVEEHQKGNISLIIGATGNKGESRRADFGQVINNHPTLKVYLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNK-QDVLVVAGKGHETVHIVT 476
           +P  EDP+ I  EI + +        +R +AI TAI+   K  D L++AGKG +   IV 
Sbjct: 405 DPNFEDPQDICQEIANHVNRSVSIIADRTKAISTAIKDCQKEGDALIIAGKGADAYQIVN 464

Query: 477 NGEKKMSVDCDIIREILG 494
             +     D  + + ++ 
Sbjct: 465 GQKTDYPGDLAVAQSLIN 482


>gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 481

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 211/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ K  +F E+I     F         +++S DSR++    +F  + G       F+  
Sbjct: 9   DILKKDHNFREIIKDGHYFFHDSG-LTFDKISYDSRNVTNTTLFF-VKGENFK-KEFLEG 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A+  G +  +  S + +           P+LVV++ ++ +SL A   YG   +   ILA 
Sbjct: 66  AVESGLKFYISESDFEV---------GIPVLVVNDIKQAMSLIAMEFYGNPQDKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFKMMAQAVA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+   A  F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDASVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++        +++K   ++               +    A + +    ++ +   
Sbjct: 234 ENSRAVVVNSGMDHFQIVKEQVSSIEHDFYGENSSNT--IIDSQAFNFEVSGKLAGKYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NAL A   C+ +G     +      L  VPGR E +   + G +++
Sbjct: 292 -----QLIGRFNQENALAAGLACLRLGASLTDIQ-KGITLTRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SL  +L  ++    G+ ++V G  G++ + +R   G +     +I  I+T D
Sbjct: 345 VDYAHNGDSLTKLLNVVQEHQKGQTVLVLGATGNKGESRRKDFGILLNKHPEIQVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQIVH 464

Query: 477 NGEKKMSVDCDIIREIL 493
           + +     D  I    L
Sbjct: 465 DQKVAYPGDYQIAENYL 481


>gi|76787595|ref|YP_330032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae A909]
 gi|77411511|ref|ZP_00787855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
 gi|123601572|sp|Q3K0C1|MURE_STRA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|76562652|gb|ABA45236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae A909]
 gi|77162437|gb|EAO73404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
          Length = 484

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 119/500 (23%), Positives = 211/500 (42%), Gaps = 31/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++    +F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  G    V    Y           + P+++V++ +K +SL +   Y      +  
Sbjct: 64  LDSAITAGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      T+        + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++         ++K             Y    I   +  + H K ++  + +
Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESQAFSFHVKGKLENTYD 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K       L G+F   NA+ A   C+ +G+    +   + +   VPGR E +   + G 
Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++  I+
Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI  A  + N + D +++AGKG +   
Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+       S D ++ ++ L
Sbjct: 463 IIKGNHDNYSGDLEVAKKYL 482


>gi|256832301|ref|YP_003161028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
 gi|256685832|gb|ACV08725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
          Length = 534

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 136/518 (26%), Positives = 214/518 (41%), Gaps = 37/518 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
              L++ + +      + +++ ++  +  ++ G +FVA+ G +  G  +I QAI  GA  
Sbjct: 11  LQSLVHTVPVQVHAMADAQVSGLAIQTARVRPGDLFVAVAGQRSHGAQYIEQAIHAGARG 70

Query: 71  IVVSSAYS--LQDFSATIRSNTPILVVDN---TRKFLSLFASRLYGKHPENILAVTGTSG 125
           ++   A     ++  A++    P+LVVD+    R+     A+ +YG+    +     T  
Sbjct: 71  VLTDEAGYRIARELDASVGHELPVLVVDDGHDVREIAGQVAATIYGQPAARLTTAGITGT 130

Query: 126 KSSVASFVQ--QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                +      I + +G  +  +G   T        +  TT     L   L+    + V
Sbjct: 131 NGKTTTTFFLDAILRTAGHHTGLMGTVETRLGDHTVSSTRTTVEAPELQGFLARCLEEEV 190

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           T VS+E SSH L  HR+ G +     FTNL RDH+D+H +   YF AK +LF     +  
Sbjct: 191 TAVSMEVSSHALALHRITGTQFDVVGFTNLQRDHLDFHGSMAEYFAAKAQLFHSDYARAG 250

Query: 243 PAIIYADDAYSKEVMKRAHNAGC-----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  D                     R   V      + +      +  Q V     G
Sbjct: 251 VINVDDDWGVQLHHQATIDTWSVATTPERAAHVHADWTVVEVGDYQPNYGTQFVLQGPHG 310

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +       LPG   V NA +AA +    G+    + E L  LH +PGR E V   ++   
Sbjct: 311 QRLRCHSALPGTVNVANAALAALMARLAGVSDNNITEGLRSLHSIPGRMEVVSKPAQPL- 369

Query: 358 IYVDYAHTSNSLEMILKNIRTI---------TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             VDYAHT+ +L+  L ++R           T G + VV G  GDRD  KRP MG +A  
Sbjct: 370 TIVDYAHTAEALDFALSSLRQDLAARAHESGTHGVLRVVCGAAGDRDPSKRPEMGAVAAR 429

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-------------GFIEKGNRIEAIRTAIEM 455
           LAD+  + DD+P  ED   IR +++ G                  E   R  AI   I  
Sbjct: 430 LADVVYIADDDPHGEDRATIRQDLLKGAQSEAQRQAAHGRIIDVKEYDQRESAIDDVIAA 489

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +  D++++AG+GHETV  +  G      D    R  L
Sbjct: 490 ASDGDIILIAGRGHETVQDMA-GVPHELDDRRHARRAL 526


>gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 481

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 210/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ K  +F E+I     F         +++S DSR++    +F  + G       F+  
Sbjct: 9   DILKKDHNFREIIKDGHYFFHDGG-LTFDKISYDSRNVTNTTLFF-VKGENFK-KEFLEG 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A+  G +  +  S + +           P+LVV++ ++ +SL A   YG   +   ILA 
Sbjct: 66  AVESGLKFYISESDFEV---------GIPVLVVNDIKQAMSLIAMEFYGNPQDKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L + ++   +
Sbjct: 117 TGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFEMMAQAVA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+   A  F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDASVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I        +++K   ++               +    A   +    ++ +   
Sbjct: 234 ENSRAVIVNSGMDHFQIVKEQVSSIEHDFYGENSSNT--IIDSQAFSFEASGKLAGKYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NAL A   C+ +G     +      L  VPGR E +   + G +++
Sbjct: 292 -----QLIGRFNQENALAAGLACLRLGASLTDIQ-KGIALTRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SL  +L  ++    G+ I+V G  G++ + +R   G +     +I  I+T D
Sbjct: 345 VDYAHNGDSLTKLLSVVQEHQKGQTILVLGATGNKGESRRKDFGILLNKHPEIQVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDAVILAGKGADAYQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  I    L
Sbjct: 465 GIKEAYPGDYQIAENYL 481


>gi|312868464|ref|ZP_07728664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
 gi|311096209|gb|EFQ54453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
          Length = 481

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 120/491 (24%), Positives = 206/491 (41%), Gaps = 30/491 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           ++F E++     +         + +S DSR I A  +F  + G       ++ QAI+ G 
Sbjct: 15  QNFREVLVNGEYY-YHLEGTSFDAISYDSRKISASTLFF-VKGANFK-KEYLEQAISNGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
              V    Y +           P ++V++ ++ +SL A   YG   +   +LA TGT GK
Sbjct: 72  GFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A F   I ++S   +      T+        + LTTP  + L   ++   +   TH+
Sbjct: 123 TTAAYFAYHILKQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAEAVANDRTHL 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS      R+ G+    G F N+  DHI      +          + LL K S A+
Sbjct: 183 IMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMKNSQAV 239

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +   D     V+K                    ++   A        ++ +         
Sbjct: 240 VINSDMDHFSVLKEQVEDQEHDFYGSQSEN--QIENSKAFSFSATGKLAGDYDI-----Q 292

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F   NA+ A   C+ +G     + + + K   VPGR E +   + G ++++DYAH 
Sbjct: 293 LIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRMEVLTQKN-GAKVFIDYAHN 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424
            +SL+ +L  + T  +G I +V G  G++ + +R   G +  D  +I   +T D+P  ED
Sbjct: 351 GDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYED 410

Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKM 482
           P  I  EI   I   +E   +R EAI+ A+      +D +++AGKG +   IV   +++ 
Sbjct: 411 PLAIAEEISSFITRPVEKIADREEAIQRAMATTSKPEDAVIIAGKGADCYQIVNGIKEEY 470

Query: 483 SVDCDIIREIL 493
             D  I    L
Sbjct: 471 PGDAAIAERYL 481


>gi|313891284|ref|ZP_07824902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120351|gb|EFR43472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 479

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 116/494 (23%), Positives = 213/494 (43%), Gaps = 32/494 (6%)

Query: 5   DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           DL+   K+F E+I   S +   +      ++S DSR +    +F  + G       ++  
Sbjct: 9   DLLKADKNFREVIADDSYY-YHYTGLNFAKLSYDSRDVDDQTLFF-VKGANFK-AEYLQS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A+ QG  A +    Y +         + P ++V++ +  +S+ A   Y    +   +LA 
Sbjct: 66  ALEQGLPAYISEVDYEV---------DIPAIIVNDIKHAMSIIAMAFYDNPQDNLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S  ++      T+        ++LTTP  + L K ++   S
Sbjct: 117 TGTKGKTTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFKSQLTTPESLDLFKMMAECVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D    +++K       +      Q    H+    A   K    ++   K 
Sbjct: 234 ENSRAVIINSDMDYFKILKEQV--KNQEHDFYGQASDNHILDSQAFTFKVTGKLAGSYKT 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                         +  +AAGL       S+  +        VPGR E +     G +++
Sbjct: 292 L------LIGRFNQDNALAAGLACLRLGASSDDIRKGIAETTVPGRMEVLSHPC-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SLE ++  +     G+II++ G  G++ + +R    K+  +  ++  I+T D
Sbjct: 345 VDYAHNGDSLEKLVSVVEEHQKGQIILIIGSTGNKGESRRADFAKVINNHPNLSVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476
           +P  EDP+ I  EI   +   +    +R +AI+  +++   + D L++AGKG +   I+ 
Sbjct: 405 DPNFEDPQTISEEIASYVSRQLTIEVDREQAIKLGLQLCQKEGDALIIAGKGADAYQIIN 464

Query: 477 NGEKKMSVDCDIIR 490
             ++  + D  I +
Sbjct: 465 GKKRDYAGDYTIAK 478


>gi|331091598|ref|ZP_08340434.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403625|gb|EGG83181.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 508

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 186/499 (37%), Gaps = 24/499 (4%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +   E  N L        +  I +++ DS+ +    +F+   G       ++ +A+  G
Sbjct: 13  SELVKEQDNLLEEELYGKEQTTIEQLTFDSKKVTENTLFIC-KGMAFK-EEYLKEAVKNG 70

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A   +    Y        +  + P ++V + RK + + A++ + +  +  N++ + GT G
Sbjct: 71  AVCYISEQKYE-------LDEDVPYILVKDIRKAMPVLANKFFNEAWKELNVIGIGGTKG 123

Query: 126 KSSVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           KS+   ++               S+              ++ +TTP  + L        +
Sbjct: 124 KSTSVYYMKSILDDYLAANGKKESAVISSIDIYDGVEKIESHITTPEAVELHGYFRNAVN 183

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+  V +E SS  L   R++ +      F N+  DHI   +  + + +           
Sbjct: 184 CGMEFVEMEVSSQALKYGRVNEMMFDVAVFLNICEDHISPIE-HKDFEDYFSSKLLIFQK 242

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            ++  +    D   + +           +S   +    +   +    +     +     D
Sbjct: 243 TKTAVVNLDADFSDRILEAAQCAPKVVTISTKNENADFYAYNIHKEGDGTIFNVRCAEFD 302

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +F   +PG F V NAL    +     I     +    K     GR E   ++       
Sbjct: 303 KEFELTMPGFFNVENALATIAVANQFNIPVE-FMYSGLKKARSSGRMELSTSDDNKIIAV 361

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VDYAH   S E +  +I+     R I+ +FGC G +   +R  +G IA   A    +  +
Sbjct: 362 VDYAHNKLSFEKLFSSIKEEYPDREIISIFGCPGKKAFTRRRDLGTIAGKYAKKVYLAAE 421

Query: 419 NPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P  E  E+I  +I   +      +    +R EAI+ AIE +    +L++ GKG+ET   
Sbjct: 422 DPGYEPVEEISRDIAEYVEAQGCPYEMIEDRGEAIKKAIESVENPSILLITGKGNETRQK 481

Query: 475 VTNGEKKMSVDCDIIREIL 493
                     D D +++ L
Sbjct: 482 YGCEYVDCPSDTDYVKKYL 500


>gi|332654846|ref|ZP_08420588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332516189|gb|EGJ45797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 665

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 128/504 (25%), Positives = 197/504 (39%), Gaps = 24/504 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D +     + +    I     R +++  ++ DSR +  G +F+   G       F+  
Sbjct: 8   LGDYLDLLSEQNLLAAPIPDGLDRNQRVTGLTCDSRQVAPGTLFI-RKGAHF-QTKFLEM 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A  QGA A V     ++           P + + +TRK L+  A R Y        ++ +
Sbjct: 66  ARDQGAMACVSQEEDTVP--------GLPRIAITDTRKALAPLADRFYDHPSGKLKVIGI 117

Query: 121 TGTSGKSSVASFVQQICQRS------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           TGT GKSS A +++ I  R       G +       +       ++ LTTP P+ L +  
Sbjct: 118 TGTKGKSSTAYYMKSILDRYQESQGRGETGVVSSIDTYDGVERFESHLTTPEPLDLQRHF 177

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  +  G+ +V++E SS  L  HR    +  A  F N+G DHI   +          +L 
Sbjct: 178 ANAAQTGLEYVTMEVSSQALKYHRSLCTEFAAACFLNIGYDHISPIEHPDFEDYFASKLK 237

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S   +  D A       +A  A     S  Y    ++   V     +   T+ 
Sbjct: 238 IFAQAHISCVNLDCDHAQRVLEAAQAAGAPIITFSQKYPAAQVYASDVHKEDGQILFTLR 297

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG F V NAL AA LC A+ I    V + L +  V PGR E       
Sbjct: 298 TPRYTRQMRLTMPGLFNVENALGAAALCEALDIPEWAVYDGLVRARV-PGRMEVYANADG 356

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                VDYAH   S E +  ++R       + +VFGC G +   +R  +G+ A    D  
Sbjct: 357 RVLSIVDYAHNRLSFETLFSSVRAEYPERELAIVFGCPGKKAYDRRHDLGEAAGAWCDRV 416

Query: 414 IVTDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +T+++   ED   I  EI      G        NR EAIR A+    K  VL++ GKG 
Sbjct: 417 YLTEEDSGEEDTLDICQEIRPNVEKGKARCRIIPNRGEAIRQAVLESEKPTVLLLTGKGR 476

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           ET             D + ++  L
Sbjct: 477 ETRQKRGTEYIDTPTDVEYVQAFL 500


>gi|107021633|ref|YP_619960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688578|ref|YP_834201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891822|gb|ABF74987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646667|gb|ABK07308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
          Length = 515

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 146/472 (30%), Positives = 219/472 (46%), Gaps = 22/472 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++AG +FVA   +  D   F+  A+A+GA A++          +A        
Sbjct: 31  LHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVALA 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +   +  +     AS  YG   +++LAV  TGT+GK+S   ++             IG  
Sbjct: 91  VPALD--QLAGEIASGWYGDPSDSLLAVGVTGTNGKTSCTQWIATALTALHQPCAVIGTL 148

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            T +         TTP    L ++L+ L   G   V++E SSH L Q R++G       F
Sbjct: 149 GTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRVNGTAFDIAVF 208

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263
           TNL +DH+DYH T  AY  AK +LF         A+I  DDA  + +++      R    
Sbjct: 209 TNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVINRDDAAGRRLLEKLAGRVRTIAY 266

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G          + +    V A        +     D +      G F V N L   G  +
Sbjct: 267 GIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDANVEVGTLGTFNVSNLLAVLGALL 326

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379
           A  +     L  +E+L  V GR + +G   +       +DYAHT ++LE  L  +R I  
Sbjct: 327 AADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAA 386

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +++ G+  
Sbjct: 387 ARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAGMTA 446

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                   +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 447 PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 497


>gi|146318305|ref|YP_001198017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 05ZYH33]
 gi|146320499|ref|YP_001200210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 98HAH33]
 gi|253751469|ref|YP_003024610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|253753370|ref|YP_003026511.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|253755801|ref|YP_003028941.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|166224789|sp|A4W0C1|MURE_STRS2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224791|sp|A4VU28|MURE_STRSY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145689111|gb|ABP89617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           05ZYH33]
 gi|145691305|gb|ABP91810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           98HAH33]
 gi|251815758|emb|CAZ51359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|251818265|emb|CAZ56074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|251819616|emb|CAR45345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|319757886|gb|ADV69828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis JS14]
          Length = 481

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 114/496 (22%), Positives = 205/496 (41%), Gaps = 30/496 (6%)

Query: 5   DLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +++  D     I Q       W + + + +S DSR +    +F A  G       F+ +A
Sbjct: 9   EILKADANFRHIKQNDQTDSTWTDVQFDALSYDSRTVSPMTLFFA-KGLAFK-KEFLEKA 66

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121
           I  G    V    Y +           P ++V + ++ +SL A   +G   +   +LA T
Sbjct: 67  IEAGLAFYVSEINYEV---------GIPAIIVHDIKQAMSLIAMEFHGHPQKQLKLLAFT 117

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++ A F   I ++S   +      T+        + LTTP  + L   ++     
Sbjct: 118 GTKGKTTAAYFAFNILKQSKKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKN 177

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+TH+ +E SS      R+ G+    G F N+  DHI      +          + LL  
Sbjct: 178 GMTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMD 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S A+I        EV+K   ++            +    +     +      +      
Sbjct: 235 NSRAVIVNAGMDHFEVVKEQVSSK-------DHDFYGPTSENQISQSAGFDFTATGKLAG 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   L G F   NA+ A   C+ +G     +   + +   VPGR E +     G +++V
Sbjct: 288 HYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRMEVLTQ-QNGAKVFV 345

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDN 419
           DYAH  +S++ ++  +    +G++ ++ G  G++ + +R   G +  D   I  I+T D+
Sbjct: 346 DYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADD 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTN 477
           P  EDP  I  +I   +        +R EAIRTA+    + +D +++AGKG +   IV  
Sbjct: 406 PNREDPAAIAEQIRAHMTRTSNFILDREEAIRTAMSQTSSPKDAVIIAGKGADAYQIVNG 465

Query: 478 GEKKMSVDCDIIREIL 493
            +     D ++ ++ L
Sbjct: 466 EKAAYDGDLEVAKQYL 481


>gi|319745329|gb|EFV97644.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 484

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 119/500 (23%), Positives = 211/500 (42%), Gaps = 31/500 (6%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           K+ +++    +F E++     +    +    N +S DSR I +  +F A  G       +
Sbjct: 6   KILEILKNDHNFREILFHEHYYYNWTQNVTFNALSYDSRQISSDTLFFA-KGATFK-KEY 63

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           +  AI  G    V    Y           + P+++V++ +K +SL +   Y      +  
Sbjct: 64  LDSAITTGLSFYVSEIDYGA---------DIPVILVNDIKKAMSLISMSFYNNPQNKLKL 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + +   +      T+        + LTTP  + L + ++ 
Sbjct: 115 LAFTGTKGKTTAAYFAYHMLKVNHRPAMLSTMNTTLDGKSFFKSHLTTPESLDLFRMMAT 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 175 AVENQMTHLVMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFFHKR 231

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++         ++K             Y    I   +  + H K ++  + +
Sbjct: 232 LLMENSNAVVVNSQMDHFNIVKEQVEYIPHDFYGDYSENVITESQAFSFHVKGKLENTYD 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K       L G+F   NA+ A   C+ +G+    +   + +   VPGR E +   + G 
Sbjct: 292 IK-------LIGKFNQENAIAAGLACLRLGVSIEDIKNGIAQ-TTVPGRMEVLTQTN-GA 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIV 415
           +I+VDYAH  +SL+ +L  +     G II+V G  G++ Q +R   G +     ++  I+
Sbjct: 343 KIFVDYAHNGDSLKKLLAVVEEHQKGDIILVLGAPGNKGQSRRKDFGDVINQHPNLQVIL 402

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVH 473
           T D+P  EDP  I  EI   I        +R EAI  A  + N + D +++AGKG +   
Sbjct: 403 TADDPNFEDPLVISQEIASHINRPVTIIIDREEAIANASTLTNCKLDAIIIAGKGADAYQ 462

Query: 474 IVTNGEKKMSVDCDIIREIL 493
           I+       S D ++ ++ L
Sbjct: 463 IIKGNRDNYSGDLEVAKKYL 482


>gi|114777867|ref|ZP_01452798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
 gi|114551858|gb|EAU54398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
          Length = 488

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 210/477 (44%), Gaps = 27/477 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  +  DSR+++ G+  + +  ++     ++  A  QGA AI+            ++
Sbjct: 16  DVLIMGICDDSRYVKPGYAMICLPRSRAHVADYVEAAGKQGATAIIA--------VGVSV 67

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS- 143
            S+ P+L + + ++   L   RL+           +TGT GK+SVA  +++   R     
Sbjct: 68  TSDLPVLHLASMQQA-GLLLRRLFRTEEARTHFYGITGTDGKTSVAWMLREALTRYQPKP 126

Query: 144 SFQIGPTS--TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  G            D   TTPS + +   LS  +  GV  V+ E SSHG+ Q R+ G
Sbjct: 127 VWSCGTLGWLRAPDDILDIGNTTPSMLTMHAMLSSANLGGVHSVACEISSHGIAQERIAG 186

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I      +TN+G DH+  H   + Y   K    +         +  AD A  +E      
Sbjct: 187 IDFHTAIWTNMGHDHLQDHGGYETYLKTKAGFVQATAAHGGNVVANADHADIREHAPEHA 246

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 L                         S EG+      PL        A VA  L
Sbjct: 247 CWYGHGLYRDDVDLAW-----EQELPGLLRLKSAEGEVVIEDIPLGDFHAENVACVALTL 301

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++ I  A + + L ++   PGR + V       ++Y+DYAHT  +L+  L+  R +T 
Sbjct: 302 MVSMAIPLADLPKLLGRISAPPGRMQEVTAGYG--QVYIDYAHTPEALDRCLQAARKLTR 359

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R++VVFGCGG+RD+ KRP MG IA++ AD+  +T DNPR E P  I +EI  G+     
Sbjct: 360 ARLMVVFGCGGERDREKRPQMGAIAVEQADLVWITSDNPRGEMPAVIASEIEQGMSQPYA 419

Query: 442 KG-----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                  +R +AI  AI  L + D+L++AGKGHE    V  G++    D  +  + L
Sbjct: 420 AEVRLQLDRDKAIGEAIATLAEGDLLIIAGKGHEAYMDVC-GQRLPWSDEQVAEKYL 475


>gi|119960821|ref|YP_947465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
 gi|119947680|gb|ABM06591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
          Length = 536

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 144/510 (28%), Positives = 237/510 (46%), Gaps = 34/510 (6%)

Query: 11  FPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              + + L +  P   ++R +  ++ +SR ++ G +++A+ G    G  F+PQA+  GA 
Sbjct: 19  LATIADALGVAAPDASQDRGVTGITLNSRAVETGDLYMALPGASRHGADFVPQAVEAGAV 78

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT-----GTS 124
           A+V   A + Q   A  +   P+L+V   R  +   A+ +Y   P +    T     GT+
Sbjct: 79  AVVTDDAGARQLALAGEQP-VPVLIVPEPRTAVGRLAALIYRSQPADGGFPTLYGVTGTN 137

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++   F+  + +        IG    +       + LTTP    +   L+ +  +G+ 
Sbjct: 138 GKTTTTYFINSLLRALEKKPGLIGTIEIVAGGEPIPSLLTTPESTDVHALLALMRERGLD 197

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             S+E SSH +  HR+DG+      FTNL +DH+D H +   YF  K  LF     +   
Sbjct: 198 AASMEVSSHAISYHRVDGVMFDVAGFTNLTQDHLDLHGSMDEYFRTKAELFT--AGRARH 255

Query: 244 AIIYADDAYSKEVMKRAHNA----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGK 298
           A++  DD + +++ + A         + +          +  + A     +  +   +G+
Sbjct: 256 AVVTVDDDWGRQLAETADIPVTTLSTKPVDGSSSSTDWKVASITARGLGSEFELKHADGR 315

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSR 354
                  LPG+F V NA +A  + +A G+D     A +  H      VPGR + + T   
Sbjct: 316 TLRVHTGLPGDFNVANAALATVMVLASGVDEHTLQAALDAHDPFTVSVPGRMQLISTE-- 373

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                VD+AH  ++L   L+ +R+   G R+IVVFG  G RD+GKRP MG IA  LAD+ 
Sbjct: 374 -PASVVDFAHNPDALSRALEAVRSPREGSRVIVVFGATGQRDKGKRPTMGAIAARLADVV 432

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI----------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I++DD+P  ED   IRAE++ G              IE   R  AI+ A++M   +D ++
Sbjct: 433 IISDDDPHDEDAAAIRAEVLQGAHAARDSENLNSEIIESYPRDAAIKLAVDMATGKDTIL 492

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +AG+GHE    V  G      D   +R  L
Sbjct: 493 IAGRGHEVWQEVK-GVNLALDDRVELRAAL 521


>gi|325962944|ref|YP_004240850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469031|gb|ADX72716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 550

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 138/496 (27%), Positives = 218/496 (43%), Gaps = 29/496 (5%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    +  +  +S +SR ++ G ++VA+ G    G  F  QAI  GA AI+   A + 
Sbjct: 47  VVPGASADVAVTGISLNSRTVERGDLYVALPGAVRHGADFAAQAIEAGAAAILTDDAGAR 106

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PENILAVTGTSGKSSVASFVQ 134
              + +  +  P+LVV   R  +   ++ +Y  +     P  +  VTGT+GK++   F+ 
Sbjct: 107 L-LALSSDTAVPVLVVGAPRNVVGPLSAMIYRSNSTEGTPLQMFGVTGTNGKTTTTYFIT 165

Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + +  G  +  IG            + LTTP    +   L+ +   G+T  ++E SSH 
Sbjct: 166 SLLRSLGKKTGLIGTIEILAGGSPVPSLLTTPESPDVHGLLALMRENGLTAAAMEVSSHA 225

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +   R+DG+      FTNL +DH+D H T + YF  K  LF     +   A++  DD + 
Sbjct: 226 ISYQRVDGVTFDVAGFTNLTQDHLDLHHTMEDYFATKAELFTP--ARARKAVVTVDDEWG 283

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           + +   A      + +         + +  A     + T+   G     +          
Sbjct: 284 RRLAGAAAVPVITLSTSAQHPGDWTVTETAARGLGTEFTLRGPGGTRLRVHTGLPGTFNV 343

Query: 314 NALVAAGLCIAIGIDSALVLE-----HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                A + +  G   A  L+            VPGR + V          VD+AH +++
Sbjct: 344 ANAALAAVMVLAGGVDAATLQAALDAEDPFTVAVPGRMQLVSEQ---PAAVVDFAHNTDA 400

Query: 369 LEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           L   L+ +R+   G R+IVVFG  G RDQGKRP MG IA  LAD  IVTDD+P  ED   
Sbjct: 401 LARALEAVRSPEPGSRLIVVFGATGQRDQGKRPAMGAIAARLADTVIVTDDDPHDEDAAA 460

Query: 428 IRAEIIHGIPGF----------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           IRA+++ G               E   R +AI+ A+E+   +D ++VAG+GHE    V  
Sbjct: 461 IRADVLAGAREAKARDSLPCILEEVFPRDKAIQRAVELARPEDTILVAGRGHEVWQEVK- 519

Query: 478 GEKKMSVDCDIIREIL 493
           G      D   +R  L
Sbjct: 520 GVNLALDDRVELRSAL 535


>gi|328464396|gb|EGF35805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 523

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 189/490 (38%), Gaps = 39/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR IQ   +F    G       ++  A   GA   V    Y               
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149
           L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++  + Q +G  +  I  
Sbjct: 85  LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144

Query: 150 ----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      +  + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVIGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252
            G F N+  DHI  ++                      +        +   A     +  
Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFNEVYAAATTTTNPD 264

Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           S  +  R           +   +  + + +K+                 + D+   + G+
Sbjct: 265 SIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTLKMLGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G++     + +  + + PGR +   T + G  + VDYAH   S+
Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKNHGM-VVVDYAHNKASM 382

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             ++  ++    + +IIVV G  GD+   +RP   +     AD A +T D+P  EDP+ I
Sbjct: 383 MALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFEDPKSI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AI  AI M    DV+++ GKG +    +         
Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVNTPYPS 502

Query: 485 DCDIIREILG 494
           D  + +E++ 
Sbjct: 503 DIVVAQEVIN 512


>gi|256851857|ref|ZP_05557245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661882|ref|ZP_05862792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931965|ref|ZP_06337429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297205481|ref|ZP_06922877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615815|gb|EEU21004.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547351|gb|EEX23331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303907|gb|EFA96045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297150059|gb|EFH30356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 516

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 107/489 (21%), Positives = 183/489 (37%), Gaps = 39/489 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR IQ   +F    G       ++  A   GA   V    +               
Sbjct: 34  ISYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGATCYVAEQPFPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL-----SSF 145
           LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ I  +         S 
Sbjct: 85  LVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFSS 144

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                         + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252
            G F N+  DHI  ++                      +    +  P+   A     +  
Sbjct: 205 LGFFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETDHFPEVYAAATTTTNPD 264

Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           S  +  R           +   ++ +   L +                 + ++   + G+
Sbjct: 265 SIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTLDMIGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G +     E +  + +  GR E   T + G  + VDYAH   S+
Sbjct: 325 FNEINGTAAIIGAGLGGANHEHASEGIRHVTIS-GRMETEKTKNHGL-VVVDYAHNKASM 382

Query: 370 EMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             ++    +  ++ +IIVV G  GD+   +RP   +     AD A +T D+P  EDP  I
Sbjct: 383 MALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFADKAFLTTDDPGFEDPMDI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AIR AI M  K DV+++ GKG +    +         
Sbjct: 443 AEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICGKGADPFQKIRGVNTPYPS 502

Query: 485 DCDIIREIL 493
           D  + R  +
Sbjct: 503 DIVVARNAI 511


>gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 452

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 131/432 (30%), Positives = 200/432 (46%), Gaps = 11/432 (2%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  QL +   +    ++  ++ DSR ++ G ++ A+ G +  G  F+ QA   GA A
Sbjct: 17  LAELSGQLGVAAPEQT-AEVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVA 75

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   A + +       +  P LVVD+ R  +   A+ +YG    +   + +TGTSGK++
Sbjct: 76  VLTDPAGAER----VAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            A  V+   +    +         I      +  TTP    L    + +  +G   V++E
Sbjct: 132 TAYLVEGGLRTVHSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDAVAME 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSH L   R+DG     G FTNL  +H+++H   + YF AK +LF     +       A
Sbjct: 192 VSSHALVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFRAKAQLFTPERGRLGVVN--A 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLP 307
           DD Y + + K A        + G+       + V         T+     +      PLP
Sbjct: 250 DDEYGRRLAKEAGVPVVTYSAEGHPDADWRAEDVEVGTMDSTFTVVGPKGERIAARSPLP 309

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G F V N L A       G+D     + +  +  VPGR E V          VDYAH ++
Sbjct: 310 GPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTD 368

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++E +L+ +R +T GR+ VV GCGGDRD+ KR  MG  A  LAD A++T DNPRSEDP  
Sbjct: 369 AVESVLRALRKVTEGRVHVVLGCGGDRDKTKRAPMGAAAARLADTAVLTSDNPRSEDPLS 428

Query: 428 IRAEIIHGIPGF 439
           I A ++HG    
Sbjct: 429 ILATMLHGAATV 440


>gi|300933359|ref|ZP_07148615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium resistens DSM 45100]
          Length = 552

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 142/520 (27%), Positives = 212/520 (40%), Gaps = 64/520 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++   +  S  ++AG +F A+ G K  G  F   A    A A++   A   +D      
Sbjct: 22  VEVTSAAIGSTDVRAGGLFCAVPGLKTHGAQF---AGTSQATAVLTDPAG--EDILEAQG 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR--SGLSSF 145
              P L+VD+ R+++   A+ +YG HP   L+V G +G S   +    + +      S  
Sbjct: 77  VELPRLIVDDVREWMGPVAAEIYG-HPSRRLSVIGITGTSGKTTTSYLVEKALLPNHSVG 135

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG T T  +      +LTTP    +   L+ +  +GVTHV +E SSH L+  R+ GI  
Sbjct: 136 IIGTTGTRINGRPVPTKLTTPEAPTMQSLLAEMVDEGVTHVVMEVSSHALELGRVHGIDF 195

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-----PAIIYADDAYSKEVMKR 259
              +FTNL +DH+D+H T + YF AK +LF E   ++       A+I  DD + + + + 
Sbjct: 196 DVAAFTNLSQDHLDFHPTMEDYFQAKAKLFREQAGEKHDVKLPAAVICVDDEWGQRMAQL 255

Query: 260 AHNAGCR---------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           A                                  + +     +         ++  F  
Sbjct: 256 ASQRQGDAGGAVAPVLAVRTAGTHDSTDAAVAGAYENIPTWVLESVQVTPSGRQEIRFHT 315

Query: 305 PLPGEFQVYNAL----------------VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                      L                VA      +G D     +HL  + V PGR + 
Sbjct: 316 GATHAPDAREPLEYSIGLAGSFNVANSAVALACVAQLGEDVEAAAQHLRDVQV-PGRMQA 374

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKI 405
           V    +     VDYAH   ++  +++ +        GRI +V G GG+RDQ KRP MG  
Sbjct: 375 V-DEGQDFLAMVDYAHKPGAVAAVVRTLADYLPTKEGRIGIVIGAGGNRDQDKRPKMGYE 433

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-------------FIEKGNRIEAIRTA 452
           A  +AD   VTDDNPR EDP  IR  I  G                     +R EAI  A
Sbjct: 434 AALVADAVFVTDDNPRDEDPAPIREAIYSGAEAGFAERGVEKKTVTLANIADRAEAITAA 493

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++     D +VVAGKGHET  +V  G      D + +R  
Sbjct: 494 VQWAQPGDAIVVAGKGHETGQLVA-GVMHEFDDVEQLRAA 532


>gi|116670126|ref|YP_831059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
 gi|116610235|gb|ABK02959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
          Length = 550

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 154/501 (30%), Positives = 231/501 (46%), Gaps = 34/501 (6%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P       +  +S +SR +Q G ++VA+ G    G  F+ QA+A GA A+V     + 
Sbjct: 42  VVPGASSSVPVTGISLNSRTVQPGDLYVALPGAARHGADFVSQAVAAGAVAVVTDDDGAR 101

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQ 134
              + +  +  P+LVVD  R  +   A+ +Y   PE     ++  VTGT+GK++   F+ 
Sbjct: 102 L-LALSADTPVPVLVVDEPRSAVGGLAALIYQSRPEGGTSPSLFGVTGTNGKTTTTYFIN 160

Query: 135 QICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + Q  G  +  IG            + LTTP    L   L+ +  +G+   S+E SSH 
Sbjct: 161 ALLQALGRRTGLIGTIEILAGGAPIPSLLTTPESTDLHALLALMRERGLDAASMEVSSHA 220

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +  HR+DG++     FTNL +DH+D H T   YF  K RLF         A+I  DD + 
Sbjct: 221 VSFHRVDGVQFDVAGFTNLTQDHLDLHGTMDEYFQTKARLFTP--RHAKSAVITVDDEWG 278

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ------VTISVEGKDFDFLFPLP 307
           + +   A      + +                    +           +G +      LP
Sbjct: 279 RRLASAAGIPVTTLATAQGNDPAAPAADWTVTAAAPRGLGTEFRLRHRDGSELRVHTGLP 338

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYA 363
           G F V NA +A  + +A G++ A +   L++        PGR + V T        VD+A
Sbjct: 339 GSFNVSNAALATVMVLASGVEPATLQAALDEADPFTVAVPGRMQLVSTA---PAAVVDFA 395

Query: 364 HTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H  ++L+  L+ +R+   G R+IVVFG  G RDQGKRP MG IA  LAD+ I++DD+P  
Sbjct: 396 HNPDALQRALEAVRSTEPGSRVIVVFGATGQRDQGKRPAMGAIAARLADVVIISDDDPHD 455

Query: 423 EDPEKIRAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           ED   IRA+++ G     E G           R  AIR A+ M   QD ++VAG+GHE  
Sbjct: 456 EDAAAIRADVLAGAREAKESGGLGCTILESYPRDVAIREAVNMAQPQDTILVAGRGHEVW 515

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             V  G      D   +RE L
Sbjct: 516 QEVK-GVNLALDDRVELREAL 535


>gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 540

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 119/514 (23%), Positives = 190/514 (36%), Gaps = 56/514 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            ++ ++ DSR ++ G +F A+ G    G  +I  AI  GA AIV            T   
Sbjct: 25  DVSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLD------TYVV 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 V + R  LS  A+  Y        ++ VTGT GKSS  SF+ Q+ +  G     
Sbjct: 79  GVYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGF 138

Query: 147 IGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDG 201
           I                  TTP  + + + L+ +         +EASSHGL     RL  
Sbjct: 139 ISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQD 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------------------ 243
           +        N+  +H+++H + + Y   K  +F  L   +                    
Sbjct: 199 VAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDAS 258

Query: 244 -AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------- 295
                          KR   A  R  +   +     L         Q + +         
Sbjct: 259 AVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTVQE 318

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG---IDSALVLEHLEKLHVVPGRFEFV 349
                +D      +P E       +AA   +  G      A   +H++ +  + GR + V
Sbjct: 319 PAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQRV 378

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                   + +DYAHT +S E IL            R++V+FG  G+RD  KR + G IA
Sbjct: 379 DMGQ-DFEVLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAMQGAIA 437

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQD 460
              A + ++TD++PR EDP  I   I  G              +R+ A+R    +   QD
Sbjct: 438 SRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLARAQD 497

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++++ GKGHE   I  +  +    +    RE+L 
Sbjct: 498 LVLLLGKGHEHSIIYAHTVQPY-DEERTARELLR 530


>gi|295426127|ref|ZP_06818794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064163|gb|EFG55104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 551

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 109/495 (22%), Positives = 191/495 (38%), Gaps = 39/495 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  VS DSR IQ   +F    G       ++  A   GA   V    Y          
Sbjct: 57  TKIEYVSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------G 107

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL--- 142
                L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++ +  +      
Sbjct: 108 KGMHALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQMNGGRT 167

Query: 143 --SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
              S            +  + LTTP  + L + +      G+TH+ +E SS    ++R+ 
Sbjct: 168 ALISSVNDIVGRRPEDSFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVF 227

Query: 201 GIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-------- 250
           G+    G F N+  DH   + H     Y + K++L          A     D        
Sbjct: 228 GLTYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAESDHFDEIYAAATT 287

Query: 251 ---AYSKEVMKRAHNAGCR---VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                S  +    +    +    +   Y  +   +++                 + ++  
Sbjct: 288 TTNPDSIYLFASENFENPKLNVPIDFRYASQETDMRETRFKLFCVSDKAKQLPINGEYTL 347

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+F   NA  A       G+      + +  + + PGR +   T   G  + VDYAH
Sbjct: 348 QMIGDFNESNATAAIIGAGLAGMSHDACAKGIRHVTI-PGRMQTEMTKDHGM-VIVDYAH 405

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              S+  ++  + R   + +IIVV G  GD+   +RP   +     AD A +T D+P  E
Sbjct: 406 NKASMMALMSFVKREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFE 465

Query: 424 DPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           DP+ I  EI  GI         + +R +AI  AI M  K DV+++ GKG +    +   +
Sbjct: 466 DPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGKDDVVLICGKGADAFQKIRGVD 525

Query: 480 KKMSVDCDIIREILG 494
                D  + + ++ 
Sbjct: 526 TPYPSDIVVAQNVIN 540


>gi|161508038|ref|YP_001578005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260103045|ref|ZP_05753282.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|160349027|gb|ABX27701.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083135|gb|EEW67255.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|323467273|gb|ADX70960.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
 gi|323467316|gb|ADX71003.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
          Length = 523

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 189/490 (38%), Gaps = 39/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR IQ   +F    G       ++  A   GA   V    Y               
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149
           L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++  + Q +G  +  I  
Sbjct: 85  LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144

Query: 150 ----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      +  + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVIGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252
            G F N+  DHI  ++                      +        +   A     +  
Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFNEVYAAATTTTNPD 264

Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           S  +  R           +   +  + + +K+                 + D+   + G+
Sbjct: 265 SIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTLKMLGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G++     + +  + + PGR +   T + G  + VDYAH   S+
Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKNHGM-VVVDYAHNKASM 382

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             ++  ++    + +IIVV G  GD+   +RP   +     AD A +T D+P  EDP+ I
Sbjct: 383 MALMNFMQSEFNNPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFEDPKSI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AI  AI M    DV+++ GKG +    +         
Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVNTPYPS 502

Query: 485 DCDIIREILG 494
           D  + +E++ 
Sbjct: 503 DIVVAQEVIN 512


>gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
 gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
          Length = 481

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 116/497 (23%), Positives = 212/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F ++I+Q + +   W E   + +S DSR +    +F A  G       F+  
Sbjct: 9   EVLKKDHNFRDIIDQDNYY-YSWTEVTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLEN 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    V    Y +           P ++V + ++ +SL A   Y    + +  LA 
Sbjct: 66  AVKAGLSFYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I +++   +      T+        + LTTP  + L + ++   +
Sbjct: 117 TGTKGKTTAAYFAFNILKQNHKPAMLSTMNTTLDGKNFFKSILTTPESLDLFRMMAEAVA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI   +     F         LL 
Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLE 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+ +   +   + +   +               H        + +          
Sbjct: 235 NSRVVIVNSGMDHFDFIAEEVADKEHDFYGKNSDNAVKHGSGFSFKASGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   L G+F   NA+ A   C+ +G +   + E + +   VPGR E +   + G + +
Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLACLRLGANLQDIKEGIAQ-TSVPGRMEVLTQTN-GAKTF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SL+ +L+ + +   G I ++ G  G++ + +R   G +     D+  I+T D
Sbjct: 345 VDYAHNGDSLDKLLQVVTSHQDGHISLILGAPGNKGESRRKDFGHVLNTYPDVDIILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R +AI+TA+   ++ +D +V+AGKG +   IV 
Sbjct: 405 DPNKEDPLAICQEIASHISREVRIIVDREKAIKTAMSETIDSKDAVVIAGKGADAFQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
                 + D ++ ++ L
Sbjct: 465 GKRDNYAGDIEVAKKYL 481


>gi|225871120|ref|YP_002747067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225700524|emb|CAW94989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 481

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 119/499 (23%), Positives = 212/499 (42%), Gaps = 32/499 (6%)

Query: 3   LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L  ++ K  +F E+++Q   +   +   + + +S DSR      +F A  G+      F+
Sbjct: 7   LLTILKKDHNFREVLDQDG-YHFNYSGLQFDSLSYDSRQADEQTLFFA-KGSAFK-ADFL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            QAIA+G    V    Y +           P+++V+N +  +SL A   Y      +  L
Sbjct: 64  RQAIAKGLRLYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQNKLKLL 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           A TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++  
Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGQHFFKSQLTTPESLDLFAMMAQC 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ G+    G F N+  DHI   +     F         L
Sbjct: 175 VANGMTHLVMEVSSQAYLVGRIYGLTFDVGVFLNISPDHIGPIE--HPSFEDYFYHKRLL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      ++ +   +   + ++  +        G   + +  +                 
Sbjct: 233 MENSRAVVVNSGMEHFNILAEQVADKPHDFYGKGACNRLLQRQAFSFQAA--------GK 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D+   L G F   NA+ A   C+ +G     + + + K   VPGR E +   ++  +
Sbjct: 285 VAGDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRQGIAK-TNVPGRMEVLTMTNQ-AK 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416
           ++VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     +   I+T
Sbjct: 343 VFVDYAHNGDSLEKLLSVVEEYQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRIILT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474
            D+P  EDP+ I  EI   I        +R EAI+T +E    +QD L++AGKG +   I
Sbjct: 403 ADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKTGMERCQNEQDALIIAGKGADAYQI 462

Query: 475 VTNGEKKMSVDCDIIREIL 493
           V   +   + D  I +  L
Sbjct: 463 VKGQKTAYAGDLAIAKSYL 481


>gi|262202914|ref|YP_003274122.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
 gi|262086261|gb|ACY22229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
          Length = 556

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 152/505 (30%), Positives = 235/505 (46%), Gaps = 32/505 (6%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L +        ++  V+  ++ +++G +F A+ G+   G  F   A+A GA AI+   A 
Sbjct: 43  LDLIGGAESATEVTGVTLRAQEVRSGDLFAALPGSTTHGARFAADAVAAGATAILTDPAG 102

Query: 78  SLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQ 134
             +        ++   LV    R  L   ++R+YG   +   ++ +TGTSGK++ +  V+
Sbjct: 103 RAELSRVLPPEASVVALVHPEPRTVLGGVSARIYGNPSQRLKLIGITGTSGKTTTSYMVE 162

Query: 135 QICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                +G S   IG   T      Q + LTTP    L   L+ +  +GV  V +E SSH 
Sbjct: 163 AALLAAGSSVGLIGTVETRIDGVAQPSSLTTPEAPTLQALLAVMLERGVDAVVMEVSSHA 222

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L   R+DG     G+FTNL +DH+D+H T  AYF AK +LF    P  +   +   D   
Sbjct: 223 LALGRVDGSHFALGAFTNLSQDHLDFHPTMAAYFEAKAQLFVPSSPVHAVRSVICVDDEW 282

Query: 254 KEVMKRAHNAGCRVLSV--------GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              M        R  +         G   ++   + V       +  I+    D + + P
Sbjct: 283 GARMAELARPAARQSARQPVTVSTGGVPAQWHAAESVVDADGTSRTPITGTDGDAELVVP 342

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG + V NAL+A  +    G+D+A  +  +  + V PGR + V          VDYAH 
Sbjct: 343 LPGRYNVANALLAVAVADCAGVDAATAIGAIATVSV-PGRLQRVDRGQ-PFLALVDYAHK 400

Query: 366 SNSLEMI-----LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +++ +      +      +GR+ +V G GGDRD  KRP+MG+ A   A+  +VTDDNP
Sbjct: 401 PGAVQAVLATLRAQAAARAEAGRVAIVIGAGGDRDTAKRPLMGEAAARGAEFVVVTDDNP 460

Query: 421 RSEDPEKIRAEIIHGI------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           R+EDP  IRAE++ G                 E G R EAI TA+      D +++AGKG
Sbjct: 461 RTEDPAAIRAEVLAGARAVGRADRPAGAEEVREVGGRAEAIATALHWARPGDTVLIAGKG 520

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HET   + NG K    D D++ ++L
Sbjct: 521 HETGQEI-NGVKHPFDDRDVVAQVL 544


>gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 490

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 145/512 (28%), Positives = 228/512 (44%), Gaps = 41/512 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +L+      ++                  + D+  +  G +F+A+ G+        
Sbjct: 1   MKLSELLAGHDHHVLQGDPERAWISA-----GTAFDADRVTPGSLFIAVPGH-------- 47

Query: 61  PQAIAQGAEAIVVSSA-------YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
              +  G  A+  + A                   +  ++ V +TR   +L  +R +G+ 
Sbjct: 48  ---VEGGPGAVAPALARGAAAVMVDADCVLPAAARDACVVRVADTRTAAALVTARYFGEP 104

Query: 114 PENI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGP----TSTISSFAQDNRLTTPS 166
              +  +A+TGT+GK+SV+  V+ +     G  +  IG               + LTTP 
Sbjct: 105 GRQMDVVAITGTNGKTSVSYMVESVLRISEGTRAGVIGTAGSRIGDEPIPMPPSVLTTPE 164

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L   L  +  +GV  V +EA+S GL  HR+D   +  G FTNL +DH+D H T + Y
Sbjct: 165 TPDLQYLLGCMRDRGVRSVVLEATSMGLLTHRVDRTFVDVGVFTNLSQDHLDDHGTMENY 224

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            +AK+RLF         A++  DD     +  +A   G                 +    
Sbjct: 225 RDAKLRLF---QGLCRHAVVNVDDPVGAGI--QAMMPGAVTTYALDAEADYRATDLVVDA 279

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              + T+  EG+ +    P PG F V NAL     C  +G D   ++  LE++  +PGRF
Sbjct: 280 AGSRFTLHHEGRKYPAAIPSPGRFSVANALATVAACHVLGHDLTGLVAALERMPQIPGRF 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E + T + G  + VDYAH+ +SL  +L  +R    GR++ VFGCGGDRD  KR  MG IA
Sbjct: 340 ERLTTAA-GTSVIVDYAHSPDSLNKVLGTVRGFARGRVVTVFGCGGDRDTTKRAEMGTIA 398

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
              +D+ ++T DNPR EDPE I  ++  GI      +    +R  AI  A+      D++
Sbjct: 399 GTHSDLCVLTSDNPRHEDPEDIMDQVAPGIAVTGTPYERIADRHAAIAFALSAAGPDDII 458

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++AGKG E    V +       D   +RE+ G
Sbjct: 459 LIAGKGSEPHQTVGD-TLIPFSDMATVRELTG 489


>gi|170731878|ref|YP_001763825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815120|gb|ACA89703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia cenocepacia
           MC0-3]
          Length = 515

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 145/472 (30%), Positives = 217/472 (45%), Gaps = 22/472 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R ++AG +FVA   +  D   F+  A+A+GA A++          +A        
Sbjct: 31  LHADTRSLEAGDVFVAYAVDGADNRAFMADAVARGAAAVLYQPEGLAHAPAAPAVPVALA 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +   +  +     AS  YG   ++   + VTGT+GK+S   ++             IG  
Sbjct: 91  VPALD--QLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVIGTL 148

Query: 151 ST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            T +      +  TTP    L ++L+ L   G   V++E SSH L Q R +G       F
Sbjct: 149 GTGMPGQLVPSGFTTPDAPQLQRSLAQLRDAGAQAVAMEVSSHALHQGRANGTAFDVAVF 208

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------RAHNA 263
           TNL +DH+DYH T  AY  AK +LF         A+I  DDA  + +++      R    
Sbjct: 209 TNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVINRDDAAGRRLLEKLAGRVRTIAY 266

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G          + +    V A        +     D D      G F V N L   G  +
Sbjct: 267 GIGDAPAPDADRELVALDVRATVTGTAFRLRSSWGDADVEVGTLGTFNVSNLLAVLGALL 326

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIRTI-- 379
           A  +     L  +E+L  V GR + +G   +       +DYAHT ++LE  L  +R I  
Sbjct: 327 AADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVVIDYAHTPDALEKTLDALRPIAA 386

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +++ G+  
Sbjct: 387 ARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQHIIDQVVAGMTA 446

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
                   +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 447 PDRARRIEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRAFSDQD 497


>gi|296876033|ref|ZP_06900089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432944|gb|EFH18735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 481

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 118/491 (24%), Positives = 208/491 (42%), Gaps = 30/491 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           ++F E++     +       + + +S DSR + A  +F  + G       ++ QAI+ G 
Sbjct: 15  QNFREVLVNGEYY-YHLEGTRFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGK 126
              V    Y +           P ++V++ ++ +SL A   YG   +   +LA TGT GK
Sbjct: 72  GFYVSEKDYEV---------GIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A F   I ++S   +      T+        + LTTP  + L   ++   +   TH+
Sbjct: 123 TTAAYFAYHILEQSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAQAVANDRTHL 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS      R+ G+    G F N+  DHI      +          + LL K S A+
Sbjct: 183 IMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMKNSQAV 239

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +   D    +V+                   I   K  +     ++    + +       
Sbjct: 240 VINSDMDHFQVLADQVANQDHDFYGSQSENQIETSKAFSFSATGKLAGDYDIQ------- 292

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F   NA+ A   C+ +G     + + + K   VPGR E +   + G ++++DYAH 
Sbjct: 293 LIGHFNQENAVAAGLACLRLGASLEDIQKGIAK-TRVPGRMEVLTQKN-GAKVFIDYAHN 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424
            +SL+ +L  + T  +G I +V G  G++ + +R   G +  D  +I   +T D+P  ED
Sbjct: 351 GDSLKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNYED 410

Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTNGEKKM 482
           P  I  EI   I   +E   +R +AI+ A+      +D +++AGKG +   IV   +++ 
Sbjct: 411 PLAIAEEISSFITRPVEKISDREQAIQLAMATTSKPEDAVIIAGKGADCYQIVNGVKEEY 470

Query: 483 SVDCDIIREIL 493
             D  I    L
Sbjct: 471 PGDATIAERYL 481


>gi|81427895|ref|YP_394894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564766|sp|Q38YZ5|MURE_LACSS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|78609536|emb|CAI54582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 513

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 112/496 (22%), Positives = 196/496 (39%), Gaps = 39/496 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                 +  ++ DSR + A  +F    GN     +F+  A   GA   V        +  
Sbjct: 25  GDSNLNMTGIAYDSRKVTADTLFFC-KGNFR--PVFLTNAKEAGAVTYVAEQPIVEGN-- 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ-RS 140
                    L+V N +K +++ ++  Y    ++  I+A TGT GK++ + F Q I Q  +
Sbjct: 80  -----GMNALIVTNVQKAMAVLSAAFYDYPQDDLFIVAYTGTKGKTTASYFTQSILQDAT 134

Query: 141 GLSSFQIGPT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +                   + LTTP  + L   +      G+TH+ +E SS    +
Sbjct: 135 NKKTALFSTIDRVLGPKPEDRFKSDLTTPESLDLFHDMRQAVENGMTHLVMEVSSQAYKK 194

Query: 197 HRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----- 249
           +R+ G+    G F N+  DH   + H   + Y + K++L          A          
Sbjct: 195 NRVYGLTFDVGFFLNISPDHVGPNEHPNFEDYLHCKLQLLVNSRHCVINAQTQNFGDVYA 254

Query: 250 ------DAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                 +  +  +         +   +   ++ + + L +               G   D
Sbjct: 255 AATTTTEPENIYLFADTSYQPAQPVNIDFRFENQAMTLAESRFKVTAVSKKAIQLGVSGD 314

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G+F   NA  A       G D     + + +L + PGR E +     G  +YVD
Sbjct: 315 YQLRLIGDFNESNATAAIIGAALGGADLIAAQQGIRRLQI-PGRMETLAVEGHGQ-VYVD 372

Query: 362 YAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH   S++ +L  + +     +++VV G  GD+   +R    ++  + AD AI+T D+P
Sbjct: 373 YAHNYASMKALLSFLQKEYNQPKLLVVVGSPGDKGVSRRAGFAQVLNEYADRAILTTDDP 432

Query: 421 RSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             EDP  I AEI+ GI         + +R  AI+ AIE     D++V+A KG +    V 
Sbjct: 433 GYEDPATIAAEILAGIDQDKVDTTVEIDRATAIKQAIEESQPGDIVVLAAKGADAYQKVR 492

Query: 477 NGEKKMSVDCDIIREI 492
             +     D  I +++
Sbjct: 493 GVDTPYPTDMVIAKQV 508


>gi|330832625|ref|YP_004401450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
 gi|329306848|gb|AEB81264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
          Length = 481

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 113/496 (22%), Positives = 206/496 (41%), Gaps = 30/496 (6%)

Query: 5   DLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +++  D     I Q       W + + + +S DSR +    +F A  G       F+ +A
Sbjct: 9   EILKADANFRHIKQNDQTDSTWTDVQFDALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKA 66

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121
           I  G    V    Y +         + P ++V + ++ +SL A   +G   +   +LA T
Sbjct: 67  IEAGLAFYVSEIDYEV---------DIPAIIVHDIKQAMSLIAMEFHGHPQKQLKLLAFT 117

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++ A F   I ++S   +      T+        + LTTP  + L   ++     
Sbjct: 118 GTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKN 177

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G++H+ +E SS      R+ G+    G F N+  DHI      +          + LL  
Sbjct: 178 GMSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMD 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S A+I        EV+K   ++            +    +     +      +      
Sbjct: 235 NSRAVIVNAGMDHFEVVKEQVSSK-------DHDFYGPTSENQISQSAGFDFTATGKLAG 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   L G F   NA+ A   C+ +G     +   + +   VPGR E +     G +++V
Sbjct: 288 HYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRMEVLTQ-QNGAKVFV 345

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDN 419
           DYAH  +S++ ++  +    +G++ ++ G  G++ + +R   G +  D   I  I+T D+
Sbjct: 346 DYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDFGLLLNDYPQIEVILTADD 405

Query: 420 PRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHETVHIVTN 477
           P  EDP  I  +I   +        +R EAIRTA+    + +D +++AGKG +   IV  
Sbjct: 406 PNREDPAAIAEQIRAHMTRPSNFILDREEAIRTAMSQTSSTKDAVIIAGKGADAYQIVNG 465

Query: 478 GEKKMSVDCDIIREIL 493
            +     D ++ ++ L
Sbjct: 466 EKAAYDGDLEVAKQYL 481


>gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 483

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 120/500 (24%), Positives = 211/500 (42%), Gaps = 35/500 (7%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F E+I               +++S DSR + +  +F A  G       ++ Q
Sbjct: 9   EILKKDHNFREIIFHNQYSLTWKENPSFSKISFDSRDVDSSTLFFA-KGATFK-KEYLEQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120
           AI +G    V    Y L         + P ++V + +K +SL A   YG       I+A 
Sbjct: 67  AIQKGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAF 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        ++LTTP  + L K ++    
Sbjct: 118 TGTKGKTTAAYFAYNILKQSHKPAMFSTMNTTLDGKTFSKSKLTTPESLDLFKMMATAVD 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G+F N+  DH     H T + YF  K  L    
Sbjct: 178 NGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANS 237

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +      +++V    H+   +      +        V               
Sbjct: 238 KAVVVNAGMDHFKVVAEQVADLPHDFYGKDSDNTIENGRTFDFDVTGKLA---------- 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               +   L G F   NAL A   C+ +G     + + + +   VPGR E +   + G +
Sbjct: 288 --GHYDIQLIGSFNQENALAAGLACLRLGTSPEDIKKGIAE-TSVPGRMEVITQAN-GAK 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416
           ++VDYAH  +SLE +L  +    +G + ++ G  G++ + +R    ++     ++  I+T
Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQTGNLHLILGATGNKGESRRADFARVINAHPNLQVILT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474
            D+P  EDP+ I  EI   +   +E   +R +AI  A+ +     D +++AGKG +   I
Sbjct: 404 ADDPNYEDPKAIAEEIASQVNRPLEIEVDREKAIAKAMSLTQTADDAVIIAGKGADAYQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V       + D +I ++ L 
Sbjct: 464 VNGERTAYAGDMNIAKKYLN 483


>gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
 gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
          Length = 483

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 213/498 (42%), Gaps = 32/498 (6%)

Query: 5   DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++   K+F ++  Q   +   W     + +S DSRH+    +F A  G       F+  
Sbjct: 9   DILKQDKNFRDIAYQ-GDYAYNWSGVTFDHLSYDSRHVTPSSLFFA-KGAVFK-KEFLQG 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
           A+ +G    +    Y +           P ++V++ ++ +SL A   Y    +   ILA 
Sbjct: 66  AVEKGLAFYIAEKDYEV---------GIPAILVNDIKQAMSLIAMAFYDNPQDKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        ++LTTP  + L + ++    
Sbjct: 117 TGTKGKTTAAYFAYNIFKQSQKPAMLSTMNTTLDGETFFKSQLTTPESLDLFEMMAQAVE 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G +H+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRSHLIMEVSSQAFLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++         +++    +            +  L      +++           
Sbjct: 234 ENSRAVVVNSGMDHFAILRDQVASIP-------HDFYGELSDNQIKNSRAFDFDLTGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G+F   NAL A   C+ +G   A +   + +   VPGR E +   + G +++
Sbjct: 287 GHYDIQLIGDFNQENALAAGLACLRLGASPADIQRGIAE-TTVPGRMEVLTQTN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SL+ +L  +    SG+ I++ G  G++ + +R   G +     D+  I++ D
Sbjct: 345 VDYAHNGDSLKKLLSVVAQHQSGKNILILGAPGNKGESRRADFGAVINHHPDLEVILSAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476
           +P  EDP+ I  EI   I        +R +AI+TA+++    QD +++AGKG +   IV 
Sbjct: 405 DPNKEDPQVICQEIASHIKRPVEIIVDREKAIKTALQLTQTAQDAVIIAGKGADAFQIVD 464

Query: 477 NGEKKMSVDCDIIREILG 494
                 + D  I ++ L 
Sbjct: 465 GKRASYAGDLAIAKKYLN 482


>gi|309803501|ref|ZP_07697594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164385|gb|EFO66639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 519

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 204/529 (38%), Gaps = 45/529 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAI-VGNKED 55
           M    +       ++ +  +      +  ++     +S DSR I+   +F     G +  
Sbjct: 1   MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRP- 59

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              ++  A   GA   V    Y               L+V N  K +SL ++  Y    +
Sbjct: 60  --TYLSYAKENGAICYVAEQPYPE-------GKGMHALIVSNVTKAMSLLSAAFYRFPQD 110

Query: 116 NI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPT----STISSFAQDNRLTTPSPI 168
           ++  +A TGT GK++ A F++ I  + +G  +                   + LTTP  +
Sbjct: 111 DLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESL 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
            L + +      G+TH+ +E SS    ++R+ G+    G F N+  DHI  + H   + Y
Sbjct: 171 DLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDY 230

Query: 227 FNAKMRLFEELLPKESPAIIYADD-----------AYSKEVMKRAHNAG---CRVLSVGY 272
            + K++L          A+    D             S  +  R         R +   +
Sbjct: 231 LHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRF 290

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 + +       +         + ++   + G+F   NA  A       G++    
Sbjct: 291 ASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDC 350

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391
            + ++ + + PGR E + T   G  + VDYAH   S+  ++  + +   S +IIVV G  
Sbjct: 351 YDGIKNVTI-PGRMETLTTAHHGT-VIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAP 408

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447
           GD+   +R    +     A+   +T D+P  ED + I  EI  GI       + + +R +
Sbjct: 409 GDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQK 468

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           AI  AI+     DV+++ GKG +    +   +     D  + +E++  +
Sbjct: 469 AIAEAIKEAKDDDVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKL 517


>gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
 gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
          Length = 505

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 116/497 (23%), Positives = 198/497 (39%), Gaps = 14/497 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +      +  Q     +   +R +  +S DSR +    +F A  G       ++  A+  
Sbjct: 11  LSSLADAIAAQGVKIRLVGPDRPVRGMSIDSRAVGPEALF-ACKGAAFKPA-YLEDALNA 68

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A +     S +   +        LV D+ R  ++  A   YG+  + I  + +TGT 
Sbjct: 69  GAAAYLCDE--SSEPDLSAHAEGVSHLVTDDIRPAMAYAARAAYGRPDKRIDIMGITGTK 126

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GKS+ +  ++ I   +G+    IG         A ++  TTP  + L + +   +  G  
Sbjct: 127 GKSTTSFLLKSIFAAAGMRPSIIGSIETDDGIDAFESHNTTPEAVDLWRHVFNTAESGRK 186

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+ +E SSH L   R  G+ L    F N+GRDHI   +   ++ +             + 
Sbjct: 187 HLVMEVSSHALKYDRTLGLMLDVACFLNIGRDHISPSEHP-SFEDYFASKLRIFDQCRTA 245

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +    D   + +             V         + V    +     ++ EG      
Sbjct: 246 VVNLDSDLVDEVLEHARRAERLLTFGVDRPEADYSARDVRPCRDGIAFDLACEGGARPMT 305

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G F   NAL A  +    GI    +   L  + V PGR E V + +      VDYA
Sbjct: 306 LGMAGLFNAENALAAIAMARIAGIGFEDIASGLAHVRV-PGRMEVVRSAAGSTIALVDYA 364

Query: 364 HTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H   S +    ++R    + +++ VFG  GD+   +R ++ ++A   AD  I T+++P  
Sbjct: 365 HNELSYKTFFTSVRKEHLAAKVVAVFGAPGDKAFERREVLPRVAAQFADYLIYTEEDPAH 424

Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNG 478
           EDP  I  E+    P         +R +AI  A E+  + D V+ +  KG ET     + 
Sbjct: 425 EDPRAIAEELAANTPADTPCEIIVDREQAIIRAFEVAGENDAVVCLLAKGDETRQHRGDS 484

Query: 479 EKKMSVDCDIIREILGL 495
             ++  D  I RE LG+
Sbjct: 485 FPEVKSDLHIARECLGV 501


>gi|309810142|ref|ZP_07703988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312870943|ref|ZP_07731048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872249|ref|ZP_07732322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|325911604|ref|ZP_08174012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325912949|ref|ZP_08175323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
 gi|308169641|gb|EFO71688.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311092333|gb|EFQ50704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093633|gb|EFQ51972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|325476590|gb|EGC79748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325477763|gb|EGC80901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
          Length = 519

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 205/529 (38%), Gaps = 45/529 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAI-VGNKED 55
           M    +       ++ +  +      +  ++     +S DSR I+   +F     G +  
Sbjct: 1   MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRP- 59

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              ++  A   GA   V    Y               L+V N  K +SL ++  Y    +
Sbjct: 60  --TYLSYAKENGAICYVAEQPYPE-------GKGMHALIVSNVTKAMSLLSAAFYRFPQD 110

Query: 116 NI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPT----STISSFAQDNRLTTPSPI 168
           ++  +A TGT GK++ A F++ I  + +G  +                   + LTTP  +
Sbjct: 111 DLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESL 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
            L + +      G+TH+ +E SS    ++R+ G+    G F N+  DHI  + H   + Y
Sbjct: 171 DLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDY 230

Query: 227 FNAKMRLFEELLPKESPAIIYADD-----------AYSKEVMKRAHNAG---CRVLSVGY 272
            + K++L          A+    D             S  +  R         R +   +
Sbjct: 231 LHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRF 290

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 + +       +         + ++   + G+F   NA  A       G++    
Sbjct: 291 ASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDC 350

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391
            + ++ + + PGR E + T + G  + VDYAH   S+  ++  + +   S +IIVV G  
Sbjct: 351 YDGIKNVTI-PGRMETLTTANHGT-VIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAP 408

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447
           GD+   +R    +     A+   +T D+P  ED + I  EI  GI       + + +R +
Sbjct: 409 GDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQK 468

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           AI  AI+     DV+++ GKG +    +   +     D  + +E++  +
Sbjct: 469 AIAEAIKEAKDDDVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKL 517


>gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
 gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
          Length = 567

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 142/479 (29%), Positives = 217/479 (45%), Gaps = 20/479 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  ++ DSR ++ G ++ A+ G K  G  F  QA A GA A++   A + +       
Sbjct: 84  PPVTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGADR----AAA 139

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  P+L V + R  +   A+ +YG+  E    L +TGTSGK++ A  V+   + +G S+ 
Sbjct: 140 TGLPVLAVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTG 199

Query: 146 QIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            +G            +  TTP    L    + +  +GV  V++E SSH L   R+DG   
Sbjct: 200 LVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCVF 259

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               F NL  +H+++H   + YF AK RLF E   +        DD Y + + K A    
Sbjct: 260 DVAVFNNLSPEHMEFHSDMEDYFQAKARLFTERRARLGVVNF--DDEYGRRLAKEASIPV 317

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCI 323
               + G        + V   H    +T+            PLPG F V N + A     
Sbjct: 318 VTFSAAGDPAADWRAEDVVFGHMDSTLTLVGPEGQRVRATAPLPGPFNVANTVAAIVTLA 377

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+D     + +  +  VPGR E V          VDYAH ++++E +L+ +R +T+G+
Sbjct: 378 AAGLDPQTAADGVAAVPGVPGRLERVDAGQ-PYLAVVDYAHKTDAVESVLRALREVTTGK 436

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----- 438
           + +V GCGGDRD  KR  MG  A   AD A++T DNPRSEDP  I   +  G        
Sbjct: 437 LHIVLGCGGDRDTTKRAPMGAAAARFADTAVLTSDNPRSEDPLTILGAMFEGAVSVPPAE 496

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               +   +R  AI  A+      D ++VAGKGHE       G  +   D  ++R  + 
Sbjct: 497 RGTVLVDADRAAAIAAAVARAEAGDTVLVAGKGHEQGQDTA-GVVRPFDDRAVLRAAIE 554


>gi|238854409|ref|ZP_04644751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|260665100|ref|ZP_05865950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931813|ref|ZP_06337298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|313473004|ref|ZP_07813491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|238833031|gb|EEQ25326.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|239528789|gb|EEQ67790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|260561154|gb|EEX27128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304120|gb|EFA96237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
          Length = 516

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 108/489 (22%), Positives = 184/489 (37%), Gaps = 39/489 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S DSR IQ   +F    G       ++  A   GA   V    +               
Sbjct: 34  ISYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGATCYVAEQPFPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGL-----SSF 145
           LVV +  K ++L ++  Y    +++  +A TGT GK++ A F++ I  +         S 
Sbjct: 85  LVVRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFSS 144

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                         + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252
            G F N+  DHI  ++                      +    +   +   A     +  
Sbjct: 205 LGFFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETDHFSEVYAAATTTTNPD 264

Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           S  +  R           +   ++ +   L +                 + ++   + G+
Sbjct: 265 SIYLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTLDMIGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G +     E +  + + PGR E   T + G  + VDYAH   S+
Sbjct: 325 FNEINGTAAIIGAGLGGANHDHAAEGIRHVTI-PGRMETEKTKNHGL-VVVDYAHNKASM 382

Query: 370 EMIL-KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             ++    +  ++ +IIVV G  GD+   +RP   +     AD A +T D+P  EDP  I
Sbjct: 383 MALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFADKAFLTTDDPGFEDPMDI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AIR AI M  K DV+++ GKG +    V         
Sbjct: 443 AEEINAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICGKGADPFQKVRGINTPYPS 502

Query: 485 DCDIIREIL 493
           D  + R ++
Sbjct: 503 DIVVARNVI 511


>gi|325519768|gb|EGC99073.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. TJI49]
          Length = 513

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 145/476 (30%), Positives = 217/476 (45%), Gaps = 32/476 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHL---FIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + +D+R + AG +FVA      DG     FI +A+A+GA A++          +A +   
Sbjct: 31  LHADTRSLGAGDVFVAY---AVDGADNRGFIAEAVARGAAAVLYQPEGLAAASAAPVALA 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P        +     AS  YG   ++   + VTGT+GK+S   ++             I
Sbjct: 88  VPA-----LDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSCTQWIATALTALHQPCAVI 142

Query: 148 GPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   + +         TTP    L ++L+ LS+ G   V++E SSH L Q R++G     
Sbjct: 143 GTLGSGMPGQLVPTGFTTPDAPQLQRSLAQLSAAGAKAVAMEVSSHALHQGRVNGTAFDI 202

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR------- 259
             FTNL +DH+DYH T  AY  AK +LF         A++  DDA  + ++++       
Sbjct: 203 AVFTNLTQDHLDYHGTFDAYEAAKAKLFAW--RGLRAAVVNRDDAAGRRLLEKLAGRVRT 260

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                          + +    V A        +     D D      G F V N L   
Sbjct: 261 IAYGIGDAQQAPDADRELVALDVRATATGTAFRLHSSWGDADVEVGTLGTFNVSNLLAVL 320

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
           G  +A  +     L  + +L  V GR + +G   +       +DYAHT ++LE  L  +R
Sbjct: 321 GALLAADVPFDAALAEVARLESVNGRMQRLGGRLQSDEPLVVIDYAHTPDALEKTLDALR 380

Query: 378 TI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I     GR++ +FGCGGDRD  KRP+MG IA  LAD  +VT DNPRSEDP+ I  +I+ 
Sbjct: 381 PIAAARGGRLVCMFGCGGDRDATKRPLMGAIAERLADEVVVTSDNPRSEDPQAIIDQIVA 440

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
           G+          +R  AI  A+    ++DV+V+AGKGHE    +  G+K+   D D
Sbjct: 441 GMTAPDRARRTEDRASAILQAVRGAAREDVVVLAGKGHEATQEIM-GKKRTFSDQD 495


>gi|307706003|ref|ZP_07642826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
 gi|307620422|gb|EFN99535.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
          Length = 481

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 205/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDSLFREIIDQ-GHYHYNYSDVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P ++V + +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQEHDFYGSQSSN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  E+P  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   IV 
Sbjct: 405 DPNYENPMAIADEISSYIDHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKEAYPGDAAVAENYL 481


>gi|306779455|ref|ZP_07417792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
 gi|308327593|gb|EFP16444.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
          Length = 425

 Score =  229 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 134/414 (32%), Positives = 189/414 (45%), Gaps = 14/414 (3%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRS 140
               R+  P+LV    R  L   A+ +YG   E   ++ +TGTSGK++    V+   + +
Sbjct: 2   EIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAA 61

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G  +  IG            + LTTP    L   L+ +  +GV  V +E SSH L   R+
Sbjct: 62  GRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRV 121

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   M  
Sbjct: 122 DGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAA 181

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVA 318
                  V +      +            QQ T          +   LPG + V N LVA
Sbjct: 182 RAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVA 241

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   +G+     +  L ++ V PGR E +     G    VDYAH   +L  +L  +  
Sbjct: 242 LAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTTL-A 298

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
               R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G   
Sbjct: 299 HPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAE 358

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                  +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 359 VGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 411


>gi|195978717|ref|YP_002123961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975422|gb|ACG62948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           MurE [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 481

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 120/499 (24%), Positives = 212/499 (42%), Gaps = 32/499 (6%)

Query: 3   LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L  ++ K  +F E+++Q   +   +   + + +S DSR      +F A  G       F+
Sbjct: 7   LLTILKKDHNFREVLDQDG-YHFNYSGLQFDSLSYDSRQADEQTLFFA-KGATFK-ADFL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
            QAIA+G +  V    Y +           P+++V+N +  +SL A   Y   +H   +L
Sbjct: 64  KQAIAKGLKIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLL 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           A TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++  
Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFKSQLTTPESLDLFAMMAQC 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ G+    G F N+  DHI   +     F         L
Sbjct: 175 VANGMTHLVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIE--HPSFEDYFYHKRLL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      ++ +   +   + ++  +        G   + +  +        +        
Sbjct: 233 MENSRAVVVNSGMEHFNILAEQVADKPHDFYGKGACNRLLQRQAFSFQAAGKLA------ 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D+   L G F   NA+ A   C+ +G     +   + K   VPGR E +   ++  +
Sbjct: 287 --GDYAIQLIGSFNQENAMAAGLACLRLGASLEDIRLGIAK-TRVPGRMEVLTMTNQ-AK 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416
           I VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     +   I+T
Sbjct: 343 IVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVRIILT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474
            D+P  EDP+ I  EI   I        +R EAI+  +E    +QD L++AGKG +   I
Sbjct: 403 ADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKAGMERCQNEQDALIIAGKGADAYQI 462

Query: 475 VTNGEKKMSVDCDIIREIL 493
           V   +   + D  I +  L
Sbjct: 463 VKGQKTAYAGDLAIAKSYL 481


>gi|315221934|ref|ZP_07863845.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
 gi|315188900|gb|EFU22604.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
          Length = 481

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 213/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++    +F E+I++   F   +R+    ++S DSR + A  +F  + G+      F+ +
Sbjct: 9   NILKNDHNFREIIDKGQYF-YHYRDLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G +  +    + +           P L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLQLYISEMDFEV---------GIPALIVNDVKQAMSLLAMEFYGNPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I Q+S   +      T+        + LTTP  + L K ++    
Sbjct: 117 TGTKGKTTSAYFAYHILQQSHKPALLSTMNTTLDGEHFFKSALTTPESLDLFKMMATAVE 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++   +    EV+     +            +         H++     +     
Sbjct: 234 ENSLAVVVNSEMDHFEVLAEQVAS-------MEHDFYGQHSDNQIRHSQAFSFETSGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   L G F   NAL A   C+ +G   A + + +     VPGR E +     G +++
Sbjct: 287 EKFDIQLIGRFNQENALAAVLACLRLGASVADIKKGIAS-TRVPGRMEVLTQ-QNGAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  ++    G+II+V G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLANLLSVVQEHQKGKIILVLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+ A+ +   + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPIAIAKEIASYISFDVDIIADRKEAIKIALSLTNREGDAVILAGKGADCYQIIN 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  I  + L
Sbjct: 465 GEKADYLGDYAIAEKYL 481


>gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
 gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
          Length = 470

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 212/451 (47%), Gaps = 20/451 (4%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G  F  QA + GA A +   A + +     + +  P+LVV + R  +   A+R+YG   +
Sbjct: 14  GADFAAQAASLGAVAALTDPAGAER----VLAAGRPVLVVGDPRGRMGALAARIYGNPGD 69

Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAK 172
               + +TGTSGK++ A  ++   + +G S+  IG   T        +  TTP    L  
Sbjct: 70  GLLQIGITGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQA 129

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +  +GV  V++E SSH L   R+DG+      F NL  +H+++H   + YF AK +
Sbjct: 130 LFAVMRERGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQ 189

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF     +        DDAY + ++  A        + G+       + V         T
Sbjct: 190 LFTRARSRRGVVNR--DDAYGRRLVAEAEVPIVTFSAEGHPDADWRAEDVEIRATDSVFT 247

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +       +    PLPG F V N L A       GID     E +  +  VPGR E V  
Sbjct: 248 VVGPDGSRYPARAPLPGAFNVANTLAAVAALAEAGIDPGRAAEGIGAVPGVPGRLERV-D 306

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +     VDYAH ++++E +L+++R +T GR+ VV GCGGDRD  KR  MG  A  LAD
Sbjct: 307 EGQPYLAVVDYAHKTDAVESVLRSLRRVTEGRVHVVLGCGGDRDTTKRGPMGAAAARLAD 366

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            A++T DNPRSEDP  I A ++ G            + + +R  AI   +      D ++
Sbjct: 367 TAVLTSDNPRSEDPLAILAAMLAGAAEVPVHERGDVLVEADRAAAIAAVVARAEPGDTVL 426

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +AGKGHE    V NG  +   D ++++E + 
Sbjct: 427 IAGKGHEQGQDV-NGVVRPFDDREVLKEAIR 456


>gi|227879194|ref|ZP_03997066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844018|ref|ZP_05549505.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256849418|ref|ZP_05554850.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|262046085|ref|ZP_06019048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|293380702|ref|ZP_06626751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|312976906|ref|ZP_07788655.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
 gi|227861197|gb|EEJ68844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613923|gb|EEU19125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256713534|gb|EEU28523.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|260573415|gb|EEX29972.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|290922742|gb|EFD99695.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|310896234|gb|EFQ45299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
          Length = 523

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 190/490 (38%), Gaps = 39/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR IQ   +F    G       ++  A   GA   V    Y               
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149
           L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++  + Q +G  +  I  
Sbjct: 85  LIVRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144

Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      +  + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252
            G F N+  DHI  ++                      +        +   A     +  
Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDEVYAAATTTTNPD 264

Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           S  +  R +       + +   +  + + +K+                 + D+   + G+
Sbjct: 265 SIYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPINGDYTLKMLGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G++     + +  + + PGR +   T   G  + VDYAH   S+
Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKKHGM-VVVDYAHNKASM 382

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             +++ +R      +IIVV G  GD+   +RP   +     AD A +T D+P  EDP+ I
Sbjct: 383 MALMRFMRNEFNDPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPKSI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AI  AI M    DV+++ GKG +    +         
Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVVLICGKGADAFQKIRGVNTPYPS 502

Query: 485 DCDIIREILG 494
           D  + ++++ 
Sbjct: 503 DIVVAQQVIN 512


>gi|255020008|ref|ZP_05292081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970537|gb|EET28026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 478

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 145/499 (29%), Positives = 222/499 (44%), Gaps = 29/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   + +    PEL    +         ++  + SDSR ++ G +FV +     DG  F+
Sbjct: 1   MYATEGLDSLLPELEGAGA--------VRVCGIESDSRRVRPGQLFVGLHSRHGDGARFL 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA+     A   ++     +         P+ V     + L     R Y        ++
Sbjct: 53  AQAL----AAGAAAALLQGPELRRDTVDGQPVWVHPEAPRLLGEALRRWYHWQGRAPGLI 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
            VTGT+GKSSV   + Q+       +  IG       +  Q    TTP+ + L   L   
Sbjct: 109 GVTGTNGKSSVTWLIAQLA-----GAEVIGTLGAGPLTALQPLANTTPAAVELWSLLGAA 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +    +++E SSH L   R+ G+   A  FTNL RDH+D+H +  AY  AK +LF   
Sbjct: 164 RQRRAQWLAMEVSSHALALERVAGVPFTAAVFTNLSRDHLDFHGSMAAYGAAKAKLFTNP 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             + +       D      ++   +   R++  G+      +++         + I    
Sbjct: 224 ALQLAVL---NADDPFSAELRTHLHPDVRIVGYGFGAGDYRVREYHPGARATLLVIDTPA 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGG 356
                  PL G     N L A      +G+D     + L  L + PGR++       +  
Sbjct: 281 GTRPLRIPLMGMANARNFLAALAAVEGLGMDVD--PQVLAALRLPPGRYQRLSPRTPQQP 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDYAHT ++L  +L+++RT+  GRI VVFGCGGDRD+GKRP MG +A  LAD  ++T
Sbjct: 339 DVLVDYAHTPDALRQVLEDLRTVAKGRITVVFGCGGDRDRGKRPEMGAVAAALADRVLLT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           DDNPRSEDP  I AEI+ G+P        +R  AI  AI      D +++AGKGHE    
Sbjct: 399 DDNPRSEDPAAIVAEILAGMPAGRAEVCHDRAAAIARAIGEAEHGDWVLIAGKGHEQTQE 458

Query: 475 VTNGEKKMSVDCDIIREIL 493
            + G K+   D ++    L
Sbjct: 459 -SAGAKRPCDDVELATRAL 476


>gi|326803791|ref|YP_004321609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651729|gb|AEA01912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 504

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 107/512 (20%), Positives = 194/512 (37%), Gaps = 35/512 (6%)

Query: 8   YKDFPELINQLS-----IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
            K   E+   L        P+   +  +  +S +S+ +  G +F    G       ++ Q
Sbjct: 2   KKTLREICRLLDERGQLKSPLLTSQASVQNLSYNSKAVSEGTLFFC-KGAHFKPA-YLEQ 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A A GA A V    Y L         +  ++ V++ R  + + A   Y    +       
Sbjct: 60  AQALGAIAYVSEQDYGL---------DLYLIQVEDIRLAMPIIADFFYQAPYQAFHLTGI 110

Query: 123 TSGKSSVASFVQQICQRS--------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           T  K    +                   +++    +        ++ LTTP  + L    
Sbjct: 111 TGTKGKTTTTFYLTKILDLYQESLGKEPTAYLSSSSYYDGVDQGESHLTTPESLELFYRF 170

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMR 232
           +++    +  +++E SS  L  HR+  +    G+F N+  DH     H   + YF +K++
Sbjct: 171 NHVRESAIDFMTMEVSSQALKYHRVAEVPFEVGAFLNISTDHISPSEHPNFEDYFMSKLK 230

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           LF++             D   +             +S   +      K + +  ++Q   
Sbjct: 231 LFDQSQLAVINLDADHIDRIYQRASDSKTVKKIVTVSTKDEKADYLAKNIVSGSDQQHFV 290

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     + +    + G F V NALVA  +     +    +++   +     GR E   + 
Sbjct: 291 LHAPDFEGEIRMKMLGRFNVENALVAIAIARYYQVPYE-IIKKALQAAQTEGRMEVYHST 349

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +     VD+AH   SLE + +  R +      IVVFG  GD+   +R  +G++A   AD
Sbjct: 350 DKRIHAIVDFAHNKLSLEKLFEASRQMYPKAHSIVVFGSAGDKAISRRKDLGEVAAQYAD 409

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQD---VLVV 464
             I+T D+P +E  EKI  EI   I           NR +AI  A +  +  D   V+++
Sbjct: 410 EIILTMDDPGTESVEKICQEINQPIQAAQRQAKIIPNRPQAIDYAFQQASAYDGEVVVLI 469

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           AGKG E    +   ++    D   +++ L  I
Sbjct: 470 AGKGDEDTMKINGVDQAYPTDRYYVKQALEEI 501


>gi|315034403|gb|EFT46335.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0027]
          Length = 514

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 201/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A +     +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 489 DLYQKVNGVDEPYAGDFALAKMII 512


>gi|256957467|ref|ZP_05561638.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
 gi|256947963|gb|EEU64595.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
          Length = 506

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 201/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A +     +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 481 DLYQKVNGVDEPYAGDFALAKMII 504


>gi|309806638|ref|ZP_07700634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166943|gb|EFO69126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 519

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 204/529 (38%), Gaps = 45/529 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAI-VGNKED 55
           M    +       ++ +  +      +  ++     +S DSR I+   +F     G +  
Sbjct: 1   MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRP- 59

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              ++  A   GA   V    Y               L+V N  K +SL ++  Y    +
Sbjct: 60  --TYLSYAKENGAICYVAEQPYPE-------GKGMHALIVSNVTKAMSLLSAAFYRFPQD 110

Query: 116 NI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPT----STISSFAQDNRLTTPSPI 168
           ++  +A TGT GK++ A F++ I  + +G  +                   + LTTP  +
Sbjct: 111 DLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESL 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
            L + +      G+TH+ +E SS    ++R+ G+    G F N+  DHI  + H   + Y
Sbjct: 171 DLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDY 230

Query: 227 FNAKMRLFEELLPKESPAIIYADD-----------AYSKEVMKRAHNAG---CRVLSVGY 272
            + K++L          A+    D             S  +  R         R +   +
Sbjct: 231 LHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRF 290

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 + +       +         + ++   + G+F   NA  A       G++    
Sbjct: 291 ASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDC 350

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391
            + ++ + + PGR E + T   G  + VDYAH   S+  ++  + +   S +IIVV G  
Sbjct: 351 YDGIKNVTI-PGRMETLTTAHHGT-VIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAP 408

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447
           GD+   +R    +     A+   +T D+P  ED + I  EI  GI       + + +R +
Sbjct: 409 GDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQK 468

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           AI  AI+     DV+++ GKG +    +   +     D  + +E++  +
Sbjct: 469 AIAEAIKGAKDDDVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKL 517


>gi|296537028|ref|ZP_06899021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296262644|gb|EFH09276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 425

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 161/411 (39%), Positives = 231/411 (56%), Gaps = 7/411 (1%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L   + R+ L+  A+  +G+ P   +AVTGT+GK+S   F++QI   +G  +  +G  
Sbjct: 14  PLLTDPDPRRALARMAAAFHGQQPAIAVAVTGTNGKTSTVDFLRQIWTLAGDRAASLGTL 73

Query: 151 STISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +  F +   LTTP P+ L + L+ L+  GV  V++EASSHGL+Q RLDG++L A  F
Sbjct: 74  GLRAPGFPETPSLTTPDPVLLHETLAGLARAGVQKVALEASSHGLEQRRLDGLRLTAAGF 133

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--PAIIYADDAYSKEVMKRAHNAGCRV 267
           +NL RDH+DYH    AY  AK+RLF+ LL +     A         + +   A     R+
Sbjct: 134 SNLTRDHLDYHGGMAAYAAAKLRLFDTLLDQGDGAVANADMAPEMLEALRAVARRRHLRL 193

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +VG  G+ I L +     + Q + +++ G+  + L  LPG FQ  N ++AAGL ++ G+
Sbjct: 194 ATVGEAGEAIRLLRHTPRPDGQALELTLYGRRAELLLALPGRFQADNVMLAAGLAVSAGM 253

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  V   L +L  V GR E       G  +YVDYAHT ++LE +L  +R    GR+ VV
Sbjct: 254 PADKVAGLLPRLTGVRGRMELAARLPNGAAVYVDYAHTPDALERLLTALRPHAEGRLHVV 313

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
           FG GGDRD GKRP+MG++   LAD AI+TDDNPR EDP  IRA +  G+ G     E G+
Sbjct: 314 FGAGGDRDGGKRPLMGEVCARLADHAILTDDNPRGEDPAAIRAAVRAGMAGGAAITEIGD 373

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           R  AI   +  L   DVL VAGKGHE    +  G      D + +R + G+
Sbjct: 374 RAAAIEAGLAALGPGDVLAVAGKGHEPGQTIQ-GVTHPFDDAETVRRLAGV 423


>gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
 gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
          Length = 501

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 110/482 (22%), Positives = 190/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + ++     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVKNGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLKETA 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S +                        
Sbjct: 260 DLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQENAA 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 320 SAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI  EI   I
Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEINEAI 438

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 439 TNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498

Query: 493 LG 494
           + 
Sbjct: 499 IE 500


>gi|225867965|ref|YP_002743913.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225701241|emb|CAW98198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 481

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 120/499 (24%), Positives = 214/499 (42%), Gaps = 32/499 (6%)

Query: 3   LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L  ++ K  +F E+++Q   +   +   + + +S DSR      +F A  G       F+
Sbjct: 7   LLTILKKDHNFREVLDQDG-YHFNYSGLQFDSLSYDSRQADEQTLFFA-KGATFK-ADFL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENIL 118
            QAIA+G +  V    Y +           P+++V+N +  +SL A   Y   +H   +L
Sbjct: 64  KQAIAKGLKIYVSEIDYQV---------GIPVILVNNIKHAMSLAAMAFYDYPQHKLKLL 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           A TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++  
Sbjct: 115 AFTGTKGKTTAAYFAYHMLKESHKPALLSTMNTTLDGKSFFKSQLTTPESLDLFAMMAQC 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ G+    G F N+  DHI   +     F         L
Sbjct: 175 VANGMTHLVMEVSSQAYLVGRVYGLIFDVGVFLNISPDHIGPIE--HPSFEDYFYHKRLL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      ++ +   +   + ++  +        G   + +  +        +        
Sbjct: 233 MENSRAVVVNSGMEHFNILAEQVADKPHDFYGKGACNRLLQRQAFSFQAAGKLA------ 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D+   L G F   NA+ A   C+ +G     + + + K   VPGR E +   ++  +
Sbjct: 287 --GDYAIQLIGSFNQENAMAAGLACLRLGASLKDIRQGIAK-TRVPGRMEVLTMTNQ-AK 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416
           + VDYAH  +SLE +L  +     G+I ++ G  G++ + +R   G++     +   I+T
Sbjct: 343 VVVDYAHNGDSLEKLLSVVEEHQKGQIYLILGAPGNKGESRRADFGQVINQHPNVHIILT 402

Query: 417 DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474
            D+P  EDP+ I  EI   I        +R EAI+T +E    K+D L++AGKG +   I
Sbjct: 403 ADDPNFEDPQLISEEIASYIHREVDIIIDRKEAIKTGMERCQSKEDALIIAGKGADAYQI 462

Query: 475 VTNGEKKMSVDCDIIREIL 493
           V   +   + D  I +  L
Sbjct: 463 VKGQKAAYAGDLAIAKSYL 481


>gi|302190928|ref|ZP_07267182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus iners AB-1]
 gi|309805417|ref|ZP_07699464.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808241|ref|ZP_07702150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|312873648|ref|ZP_07733695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|312875730|ref|ZP_07735725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|329921022|ref|ZP_08277550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
 gi|308165235|gb|EFO67471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168529|gb|EFO70638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|311088722|gb|EFQ47171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090901|gb|EFQ49298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|328935298|gb|EGG31778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
          Length = 519

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 108/529 (20%), Positives = 205/529 (38%), Gaps = 45/529 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAI-VGNKED 55
           M    +       ++ +  +      +  ++     +S DSR I+   +F     G +  
Sbjct: 1   MSESSISLNTCILILKEHHLLKSCATQDVVSTKMDYISYDSRDIKTNTLFFCKGKGFRP- 59

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              ++  A   GA   V    Y               L+V N  K +SL ++  Y    +
Sbjct: 60  --TYLSYAKENGAICYVAEQPYPE-------GKGMHALIVSNVTKAMSLLSAAFYRFPQD 110

Query: 116 NI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPT----STISSFAQDNRLTTPSPI 168
           ++  +A TGT GK++ A F++ I  + +G  +                   + LTTP  +
Sbjct: 111 DLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVDDVVGPKPEDRFKSSLTTPESL 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAY 226
            L + +      G+TH+ +E SS    ++R+ G+    G F N+  DHI  + H   + Y
Sbjct: 171 DLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDY 230

Query: 227 FNAKMRLFEELLPKESPAIIYADD-----------AYSKEVMKRAHNAG---CRVLSVGY 272
            + K++L          A+    D             S  +  R         R +   +
Sbjct: 231 LHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSIYLFARNDYDNPDLKRPIDFRF 290

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 + +       +         + ++   + G+F   NA  A       G++    
Sbjct: 291 ASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFNEINATAAIIGAGLAGVNYQDC 350

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391
            + ++ + + PGR E + T + G  + VDYAH   S+  ++  + +   S +IIVV G  
Sbjct: 351 YDGIKNVTI-PGRMETLTTANHGT-VIVDYAHNKASMIALMSFMQKEFDSPKIIVVVGAP 408

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447
           GD+   +R    +     A+   +T D+P  ED + I  EI  GI       + + +R +
Sbjct: 409 GDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQVIADEIAAGIDHDRCQVMIELDRQK 468

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           AI  AI+     DV+++ GKG +    +   +     D  + +E++  +
Sbjct: 469 AIAEAIKGAKDDDVVLICGKGADPYQKIRGVDTPYPTDIKVAQEVINKL 517


>gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
 gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
          Length = 501

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 110/482 (22%), Positives = 189/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + ++     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLKETA 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S +                        
Sbjct: 260 DLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQENAA 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +   + G  +YVDYAH   SL+ +     
Sbjct: 320 SAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQTN-GAHVYVDYAHNYLSLKTLLEFAK 378

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI  EI   I
Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEINEAI 438

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 439 TNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498

Query: 493 LG 494
           + 
Sbjct: 499 IE 500


>gi|58338066|ref|YP_194651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus NCFM]
 gi|75357189|sp|Q5FI54|MURE_LACAC RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|58255383|gb|AAV43620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus acidophilus NCFM]
          Length = 523

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 187/490 (38%), Gaps = 39/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR IQ   +F    G       ++  A + GA   V    Y               
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKSNGANCYVAEQPYPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149
           L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++  + Q +G  +  I  
Sbjct: 85  LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALISS 144

Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      +  + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G F N+  DHI  ++          +L   +  ++        +               
Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETANFNEVYAAATTTTNPD 264

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLFPLPGE 309
            +     +        V          + ++   F                D+   + G+
Sbjct: 265 SIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTLKMLGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G++     + +  + + PGR +   T   G  + VDYAH   S+
Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRNVTI-PGRMQTERTKEHGM-VVVDYAHNKASM 382

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             +++ ++      +IIVV G  GD+   +RP   +     AD A +T D+P  EDP+ I
Sbjct: 383 MALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFEDPKSI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AI  AI      DV+++ GKG +    +   +     
Sbjct: 443 AEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICGKGADAFQKIRGVDTPYPS 502

Query: 485 DCDIIREILG 494
           D  + ++++ 
Sbjct: 503 DIVVAQQVIN 512


>gi|315025677|gb|EFT37609.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2137]
 gi|315153888|gb|EFT97904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0031]
 gi|315156686|gb|EFU00703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0043]
          Length = 516

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|257086023|ref|ZP_05580384.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257420926|ref|ZP_05597916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
 gi|256994053|gb|EEU81355.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257162750|gb|EEU92710.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
          Length = 508

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|229548608|ref|ZP_04437333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|312953043|ref|ZP_07771896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|229306239|gb|EEN72235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|310629072|gb|EFQ12355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|327534252|gb|AEA93086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis OG1RF]
          Length = 513

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|227902756|ref|ZP_04020561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|227869419|gb|EEJ76840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 532

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 187/490 (38%), Gaps = 39/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR IQ   +F    G       ++  A + GA   V    Y               
Sbjct: 43  VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKSNGANCYVAEQPYPE-------GKGMHA 93

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149
           L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++  + Q +G  +  I  
Sbjct: 94  LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALISS 153

Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      +  + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 154 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 213

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G F N+  DHI  ++          +L   +  ++        +               
Sbjct: 214 LGFFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETANFNEVYAAATTTTNPD 273

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLFPLPGE 309
            +     +        V          + ++   F                D+   + G+
Sbjct: 274 SIYLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTLKMLGD 333

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G++     + +  + + PGR +   T   G  + VDYAH   S+
Sbjct: 334 FNESNGTAAIIGAGLAGLNHDQCAKGIRNVTI-PGRMQTERTKEHGM-VVVDYAHNKASM 391

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             +++ ++      +IIVV G  GD+   +RP   +     AD A +T D+P  EDP+ I
Sbjct: 392 MALMRFMQNEFNDPKIIVVVGAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFEDPKSI 451

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AI  AI      DV+++ GKG +    +   +     
Sbjct: 452 AEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICGKGADAFQKIRGVDTPYPS 511

Query: 485 DCDIIREILG 494
           D  + ++++ 
Sbjct: 512 DIVVAQQVIN 521


>gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
 gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
          Length = 501

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 149/475 (31%), Positives = 226/475 (47%), Gaps = 22/475 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR ++AG  FVA  G   DG  ++ QA+AQGA A++V +        A   S   I
Sbjct: 26  LQTDSRKVKAGDAFVAWPGAATDGRAYVGQALAQGAAAVLVEADG----LQAFDLSGDRI 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLS----SFQ 146
             +   +    L A + +       ++LAVTGT+GK++ A ++     +  L+       
Sbjct: 82  ASLKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTTTAWWLAHALSKVTLNTRTGCAL 141

Query: 147 IGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     +    +   +TTP P+ L +A    + QG+   ++EASS G+ +HRLDG K+ 
Sbjct: 142 VGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLAACAIEASSIGIVEHRLDGSKIR 201

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTN  +DH+DYH +  AY+ AK +LF+   P    A++  DDA+   +  R      
Sbjct: 202 VALFTNFTQDHLDYHGSMDAYWQAKAQLFDW--PGLPTAVVNIDDAHGARLWARLQGRAM 259

Query: 266 RVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            V SV  QG      K +         T+   G        L G++ V N L        
Sbjct: 260 DVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRMNTRLVGQYNVSNLLGVLAALRC 319

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT---ITS 381
           +G+     +     L  VPGR + +        + VDYAHT ++LE  L+ ++       
Sbjct: 320 LGLTLEEAVAACAHLEPVPGRMQQI-VKPGQPLVAVDYAHTPDALEKALRALQPAARQRQ 378

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--- 438
           G++  VFGCGGDRD  KRP+MG+ A   AD   VT DNPRSE PE I  +I+ G+     
Sbjct: 379 GKLWCVFGCGGDRDNSKRPLMGQAAQANADGVFVTSDNPRSEVPESIIDQILAGMQAGET 438

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              + +R  AI  AI   + +DV+++AGKGHE       G +    D     + L
Sbjct: 439 LHVQADRAAAIAQAIARADARDVVLIAGKGHEDYQETK-GVRHPFSDMAEAHKAL 492


>gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 499

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 117/502 (23%), Positives = 212/502 (42%), Gaps = 35/502 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F  L+N           + IN ++  S+ +  G +F +I G  EDGH +I +AI +GA A
Sbjct: 5   FDTLMNLSIKHIFGPASQTINHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGAVA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           +   ++       +T  S+   L VD+ RK ++ F+   +    E    + VTGT+GK++
Sbjct: 65  VF-GTSIEELRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTT 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQ----DNRLTTPSPIYLAKALSYLSSQGVTH 184
           VA++V+ +     L +  IG T   SS  +     +  TTP  + L K    L ++G   
Sbjct: 124 VAAYVRSLLTLLKLPTGSIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEA 183

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS  +DQ R++ I       TNL  +H++YH+T +   + K    +     +   
Sbjct: 184 AVMEVSSIAIDQQRVEDIYFDVAIHTNLSEEHLEYHKTFE---HYKKCKMKLFQQAKHAV 240

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I   D    K++ +           +      +  K +          +  +G+ +    
Sbjct: 241 INIDDQDMGKDLSRLFEGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAV 300

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G++ + N L A G  +        ++  L +L    GRF+ V       ++ +DYAH
Sbjct: 301 PVYGDYNIANVLAAIGTALHFEYHIEDIISVLPQLESPEGRFQVV-EGPNNQKVILDYAH 359

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T  +L  +++ ++ +   ++IV+    G RD  K P M ++    AD  IVT D+P   D
Sbjct: 360 TPVALTRLVEEVKKMEYNQLIVMIAGIGIRDFNKMPKMARVIEGKADEIIVTVDHPGHHD 419

Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG---------KGHE 470
           P  I  +++ G              R E +  ++ +    D++++           KG+E
Sbjct: 420 PNVIVDQVMTGFSNPSASNIHRAPTRTEGVLKSLSLGKPNDIILLTSGCINGAQLVKGNE 479

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
                         D +II   
Sbjct: 480 ----------IPHSDEEIIASY 491


>gi|315146886|gb|EFT90902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4244]
          Length = 516

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 199/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q             +     I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|257418283|ref|ZP_05595277.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
 gi|257160111|gb|EEU90071.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
          Length = 508

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 112/505 (22%), Positives = 199/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR I A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDITAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q             +     I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  S D  +    + 
Sbjct: 481 DLYQKVNGVDEPYSGDFALAEAFIN 505


>gi|307270255|ref|ZP_07551567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
 gi|306513398|gb|EFM82018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
          Length = 511

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 200/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 486 DLYQKVNGVDEPYAGDFALAKMII 509


>gi|229816609|ref|ZP_04446907.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
 gi|229807815|gb|EEP43619.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
          Length = 518

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 130/492 (26%), Positives = 200/492 (40%), Gaps = 22/492 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L     + R  +I   + DSR +    +FV   G       ++ QA+A GA A V    Y
Sbjct: 25  LEDVRDEARGIEIAYATDDSRRVVPRTLFVC-KGAAFR-REYLLQALAAGAVAYVSEVDY 82

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ 135
            +      +    P ++V++ R  L L A   Y        + A TGT GK++ A +++ 
Sbjct: 83  EVDG---EVGHEVPRVLVNDIRTALGLLADAAYDHPSGRVKVCAFTGTKGKTTSAYYLRS 139

Query: 136 ICQRSGL------SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           I             +   G          D+ LTTP    L +  +  +S G  HV +EA
Sbjct: 140 ILSEHAREMGRPVPALLTGVEYDDGVERGDSLLTTPESFELERRFANAASVGCEHVVMEA 199

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIY 247
           SS  +   R  G+    G+FTN G DHI    H T + Y  +K+ LFE          + 
Sbjct: 200 SSQAIKFRRTLGVDFAVGAFTNFGEDHISPIEHPTLEDYLESKLLLFERCRVAVVNLDMD 259

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +                  S+      + +          + T+       + + P P
Sbjct: 260 VAERALAAAHASRTVERVLTYSLEDAAADVFVPSYVRTERGIRATVRTPRIARELMIPSP 319

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             F + NAL A     A+GI +  +   L + +  PGR E   + S      VDYAH   
Sbjct: 320 AVFNLSNALGAIACAEALGISADAIETGLSRAYA-PGRMELYPSESGRIMGVVDYAHNGM 378

Query: 368 SLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           SLE +L+++R     R   VVFG  G +   +R  MG+ A  LAD  ++T+D+P  EDP 
Sbjct: 379 SLETLLRDLRASYPDREFAVVFGATGGKGVDRRETMGEAAGKLADRIVITEDDPGPEDPA 438

Query: 427 KIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
            I   I       G   +    +R EAIRTA+   +   V++V GKG++   +     + 
Sbjct: 439 LICDAIARAVSAQGNENWQVVLDRSEAIRTAVSETHAPAVVIVTGKGNDPFMLRNGVREP 498

Query: 482 MSVDCDIIREIL 493
              D D +R  L
Sbjct: 499 YEPDGDQLRRAL 510


>gi|315031426|gb|EFT43358.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0017]
          Length = 516

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
 gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
          Length = 509

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 110/482 (22%), Positives = 189/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + ++     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLKETA 267

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S +                        
Sbjct: 268 DLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQENAA 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +   + G  +YVDYAH   SL+ +     
Sbjct: 328 SAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQTN-GAHVYVDYAHNYLSLKTLLEFAK 386

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI  EI   I
Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEINEAI 446

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 447 TNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506

Query: 493 LG 494
           + 
Sbjct: 507 IE 508


>gi|257083598|ref|ZP_05577959.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
 gi|256991628|gb|EEU78930.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
          Length = 508

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEIPVYTILDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|315039137|ref|YP_004032705.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325957608|ref|YP_004293020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|312277270|gb|ADQ59910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325334173|gb|ADZ08081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|327184253|gb|AEA32700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 523

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 109/490 (22%), Positives = 192/490 (39%), Gaps = 39/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR IQ   +F    G       ++  A   GA   V    Y               
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149
           L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++  + Q +G  +  I  
Sbjct: 85  LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144

Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      +  + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------AY 252
            G F N+  DH   + H     Y + K++L          A     D             
Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETAHFDEIYAAATTTTNPD 264

Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           S  +  R +         +   +  + + +K+                 + D+   + G+
Sbjct: 265 SIYLFARENFENPDLKVPIDFRFASQELDMKETRFKLYCASDKAKKLPINGDYTLKMLGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G++     + +  + + PGR +   T S G  + VDYAH   S+
Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKSHGM-VVVDYAHNKASM 382

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             ++  ++    + +IIVV G  GD+   +RP   +     AD A +T D+P  EDP+ I
Sbjct: 383 MALMSFMQNEFDNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPKSI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AI  AI M    DV+++ GKG +    +         
Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICGKGADAFQKIRGVNTPYPS 502

Query: 485 DCDIIREILG 494
           D  + + ++ 
Sbjct: 503 DIVVAQNVIN 512


>gi|315144496|gb|EFT88512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2141]
          Length = 511

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 201/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q             +     I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVASPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 486 DLYQKVNGVDEPYAGDFALAKMII 509


>gi|300862275|ref|ZP_07108355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|300848800|gb|EFK76557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 506

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 201/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q             +     I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVASPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 481 DLYQKVNGVDEPYAGDFALAKMII 504


>gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
 gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
          Length = 487

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 126/491 (25%), Positives = 205/491 (41%), Gaps = 26/491 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  L        +  I +   +S  +Q   +F+   G   D H ++ QAI  GA A++ +
Sbjct: 3   IQALKRSAAVLEQLPIRQFVINSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIAN 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFV 133
                     T+  + P++V ++  + L++  A   +     N + VTGT+GK++VA  +
Sbjct: 63  R---------TLHLDIPVIVTESHYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCL 113

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            Q+  +S  S++        +        TTP  + L      +   GV H  +E SSH 
Sbjct: 114 NQMLNQSSTSAYIGTLGVQYADVIMALSNTTPDGVTLLNIFRDMVECGVKHNVMELSSHA 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L Q R   + L  G  TN+GRDH+DYH+T+ AY  AK+++ +  +     A+I  DD ++
Sbjct: 174 LAQDRAGFLDLEVGIITNIGRDHLDYHRTKDAYVQAKLQIIDR-IKPGGYAVINMDDPHA 232

Query: 254 KEVMKRAH------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +  R H      +          Q      K++ +       ++   GK       +P
Sbjct: 233 PAMFARCHGRVKTVSFSIHYKDTHNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQMP 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
             F V N L  A    A G     +   L  +    GR +F   N  G    VDYAH  +
Sbjct: 293 FLFNVENMLAMACALHAQGWTLDQIASGLTTIIPPDGRAQFQTLN-NGATGLVDYAHNLD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L  +  +I   T    + V G  GDR Q     +G++    +D+ + T DNP   D   
Sbjct: 352 GLARLFSDIPNQTFRHTLTVVGVTGDRIQDA-AAIGELCARYSDLVVFTMDNPLGIDQAD 410

Query: 428 IRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV---TNGEK 480
           I   +   I           +R EAI  A +M  K D++VV GKG ET  ++     G +
Sbjct: 411 IFRALTSRIESVSTPVFTIADRSEAISLAKQMSQKGDLIVVCGKGSETSQLISVNKQGLQ 470

Query: 481 KMSVDCDIIRE 491
               D  ++ +
Sbjct: 471 DYIGDMPVLMQ 481


>gi|315653102|ref|ZP_07906027.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
 gi|315489467|gb|EFU79104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
          Length = 519

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 107/493 (21%), Positives = 196/493 (39%), Gaps = 41/493 (8%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIG 148
            L+V N  K +SL ++  Y    +++  +A TGT GK++ A F++ I  + +G  +    
Sbjct: 87  ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 146

Query: 149 PT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                          + LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------A 251
             G F N+  DHI  + H   + Y + K++L          A+    D            
Sbjct: 207 DLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNP 266

Query: 252 YSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            S  +  R         R +   +      + +       +         + ++   + G
Sbjct: 267 DSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIG 326

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   NA  A       G++     + ++ + + PGR E + T + G  + VDYAH   S
Sbjct: 327 DFNEINATAAIIGAGLAGVNYQDCYDGIKNVTI-PGRMETLTTANHGT-VIVDYAHNKAS 384

Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  ++  + +   S +IIVV G  GD+   +R    +     A+   +T D+P  ED + 
Sbjct: 385 MIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQV 444

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI  GI       + + +R +AI  AI+     DV+++ GKG +    +   +    
Sbjct: 445 IADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICGKGADPYQKIRGVDTPYP 504

Query: 484 VDCDIIREILGLI 496
            D  + +E++  +
Sbjct: 505 TDIKVAQEVINKL 517


>gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
 gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
          Length = 501

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S E +                      
Sbjct: 260 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI   I
Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498

Query: 493 LG 494
           + 
Sbjct: 499 IE 500


>gi|225857155|ref|YP_002738666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae P1031]
 gi|225724415|gb|ACO20267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae P1031]
          Length = 481

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++   F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHSSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|42519760|ref|NP_965690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41584050|gb|AAS09656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus johnsonii NCC 533]
 gi|329668011|gb|AEB93959.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 523

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 103/491 (20%), Positives = 183/491 (37%), Gaps = 41/491 (8%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL-----SS 144
            LVV +  K ++L ++  Y    ++  ++A TGT GK++ A F++ +  +         S
Sbjct: 87  ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 146

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                            LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DH   + H     Y + K++L          A+    D          + 
Sbjct: 207 DLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNP 266

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--------------LFPLPG 308
               + +          + +       +  +                          + G
Sbjct: 267 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 326

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   N   A       G +     + +  + + PGR E + + + G  + VDYAH   S
Sbjct: 327 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTI-PGRMEALPSKNHGT-VIVDYAHNKAS 384

Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  ++  + R   + +IIVV G  GD+   +RP   +     AD A +T D+P  EDP  
Sbjct: 385 MMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPMD 444

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI  GI         + +R +AI  AI M +K D++++ GKG +    +   +    
Sbjct: 445 IAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVDTPYP 504

Query: 484 VDCDIIREILG 494
            D  +   ++ 
Sbjct: 505 TDIKVAESVIN 515


>gi|205372805|ref|ZP_03225615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus coahuilensis m4-4]
          Length = 443

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 206/446 (46%), Gaps = 24/446 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK---EDGH 57
           MKL  L+       +             +I+++  DSR ++   +++ + G +    D H
Sbjct: 1   MKLSHLLKDLTQYTLTGNPT-------IEISQIEMDSRRVKNQCMYICVPGIEGFLADRH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPE 115
            +I QAI  GA AI+V            + S+  ++ V++ R   S  A+  + +     
Sbjct: 54  DYIDQAIENGAHAILVEKEVD-------VPSHITVVRVEDVRLAFSKIATVFHNEAYKQL 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKAL 174
            I+ +TGT+GK++    V+++   +GL +  +G     I+       L T  P  L +  
Sbjct: 107 KIIGLTGTNGKTTTTFLVEKLLNDAGLKTGLMGNLGTKINGIMYPTELNTQEPHTLHRNF 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---M 231
           + +  + + +  +E SS G+D  R+ G+    G  TNL  DH+DYH T   Y ++K    
Sbjct: 167 AKMVEEDMEYCVMEVSSQGIDMGRMKGVPFYRGILTNLTHDHLDYHGTVDHYMHSKSQLF 226

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
              EE   ++  AI+  DD         +                             +V
Sbjct: 227 THLEEFEGEKPLAILNKDDDSYAYFKNASRGETISYGIDQDSIVQASELHFNKNGIHFKV 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T     ++ +   PL G+F VYNAL A  +   +G+        LE L  +PGR E   T
Sbjct: 287 TNKRSLEEQEIHLPLVGKFNVYNALAAITVAYTVGVTLEESKRSLENLSQIPGRME-SFT 345

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            + G  + VDYAHT ++LE +L+++++   G++I V GCGG+RD+ KRPIMGKIA + +D
Sbjct: 346 TANGVTVIVDYAHTPDALENVLQSLKSSLDGKLITVVGCGGNRDENKRPIMGKIAAECSD 405

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP 437
               T DNPR E PE+I   ++ G  
Sbjct: 406 YVYFTSDNPRFEQPEQILEGMVAGAK 431


>gi|293557173|ref|ZP_06675725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
 gi|291600674|gb|EFF30974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
          Length = 501

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S E +                      
Sbjct: 260 DLFQIPTITYGRLEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI   I
Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498

Query: 493 LG 494
           + 
Sbjct: 499 IE 500


>gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
 gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
          Length = 501

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S E +                      
Sbjct: 260 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI   I
Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498

Query: 493 LG 494
           + 
Sbjct: 499 IE 500


>gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
 gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
          Length = 509

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 267

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S E +                      
Sbjct: 268 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 328 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 386

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI   I
Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 446

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 447 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506

Query: 493 LG 494
           + 
Sbjct: 507 IE 508


>gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium DO]
 gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
 gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
          Length = 501

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S E +                      
Sbjct: 260 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLKFAK 378

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI   I
Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 498

Query: 493 LG 494
           + 
Sbjct: 499 IE 500


>gi|315166876|gb|EFU10893.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1341]
          Length = 516

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|227517630|ref|ZP_03947679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|312900256|ref|ZP_07759568.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|227074936|gb|EEI12899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|311292617|gb|EFQ71173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|315575296|gb|EFU87487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309B]
 gi|315581462|gb|EFU93653.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309A]
          Length = 513

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|29375267|ref|NP_814420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis V583]
 gi|257077542|ref|ZP_05571903.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294780452|ref|ZP_06745817.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
 gi|46576998|sp|Q838A4|MURE_ENTFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29342726|gb|AAO80491.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Enterococcus faecalis V583]
 gi|256985572|gb|EEU72874.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294452451|gb|EFG20888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
          Length = 508

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|268320124|ref|YP_003293780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
 gi|262398499|emb|CAX67513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
          Length = 523

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 103/491 (20%), Positives = 183/491 (37%), Gaps = 41/491 (8%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 37  ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPE-------GKGMH 86

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL-----SS 144
            LVV +  K ++L ++  Y    ++  ++A TGT GK++ A F++ +  +         S
Sbjct: 87  ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 146

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                            LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 147 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 206

Query: 205 IAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DH   + H     Y + K++L          A+    D          + 
Sbjct: 207 DLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNP 266

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--------------LFPLPG 308
               + +          + +       +  +                          + G
Sbjct: 267 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 326

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   N   A       G +     + +  + + PGR E + + + G  + VDYAH   S
Sbjct: 327 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTI-PGRMEALPSKNHGT-VIVDYAHNKAS 384

Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  ++  + R   + +IIVV G  GD+   +RP   +     AD A +T D+P  EDP  
Sbjct: 385 MMALMSFMQREFNNPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPMD 444

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI  GI         + +R +AI  AI M +K D++++ GKG +    +   +    
Sbjct: 445 IAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVDTPYP 504

Query: 484 VDCDIIREILG 494
            D  +   ++ 
Sbjct: 505 TDIKVAESVIN 515


>gi|239917866|ref|YP_002957424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413640|ref|ZP_06245382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839073|gb|ACS30870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
          Length = 585

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 136/513 (26%), Positives = 209/513 (40%), Gaps = 54/513 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR ++ G ++VA+ G +  G  F   A+  GA  ++  +A      +    ++
Sbjct: 55  VTGVSLDSRVVRPGDLYVAVPGARAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 113

Query: 90  TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L VD  R      A+R+YG        ++ VTGT+GK++ +     + +  G  S  
Sbjct: 114 VPVLEVDAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGKTTTSFLSAALLEALGRRSGI 173

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G            + LTTP    L   ++ +  + V    +E SSH +   R+ G++  
Sbjct: 174 VGTILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTAVMEVSSHAVAYQRIAGLRYA 233

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264
              FTNL +DH+D H + Q YF AK  LF+      +   +   +       M RA  A 
Sbjct: 234 VAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPARTDHAVITLDGGEGPRWGVAMARAAGAP 293

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL-------- 316
              L++G                +    ++    D                L        
Sbjct: 294 VTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRASVGLPG 353

Query: 317 ------VAAGLCIAIGIDSALVLE-----------HLEKLHVVPGRFEFVGTNSRGGRIY 359
                  A  + + +       L+                  VPGR E VG         
Sbjct: 354 RFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEVVGREPD---AV 410

Query: 360 VDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           VD+AH  + +   L+++          GR ++VFG  GDRD+ KRP+MG IA   AD+ I
Sbjct: 411 VDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAGDRDRDKRPVMGAIAARAADVVI 470

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--------------FIEKGNRIEAIRTAIEMLNKQD 460
           VTDD P SEDP  IRA I+ G                   E  +R  AIR A+E+   QD
Sbjct: 471 VTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRTVVIEEVADRFAAIRRAVELAGPQD 530

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +++AG+GHET     +GE     D   +RE L
Sbjct: 531 GILLAGRGHETTMDY-DGELVPLDDRVALREAL 562


>gi|104774695|ref|YP_619675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514822|ref|YP_813728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274446|sp|Q047T2|MURE_LACDB RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|123378345|sp|Q1G8B5|MURE_LACDA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|103423776|emb|CAI98782.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116094137|gb|ABJ59290.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126516|gb|ADY85846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 516

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 113/521 (21%), Positives = 203/521 (38%), Gaps = 43/521 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++       ++ +  +      +  +      VS DSR +Q   +F    G       ++
Sbjct: 2   NISLNTCILILKEHHLLKSSAVQDTVQTIMEAVSYDSRDVQNNSLFFC-KGAGFRP-TYL 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A   GA A V    Y          +    L+V N  K ++L ++  Y    +++  +
Sbjct: 60  TMAKENGAIAYVAEQPYPE-------GTGMHALIVRNVSKAMALLSAAFYSFPQDDLFLV 112

Query: 119 AVTGTSGKSSVASFVQQI-CQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKA 173
             TGT GK++ A F++ +  Q +G  +  +                + LTTP  + L + 
Sbjct: 113 GFTGTKGKTTSAYFLKGMLDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFRD 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKM 231
           +      G+TH+ +E SS    + R+ G+    G F N+  DHI  + H   + Y + K+
Sbjct: 173 MRRAVDNGMTHMVMEVSSQAYKKSRVFGLTYDLGFFLNISPDHIGVNEHPNFEDYLHCKL 232

Query: 232 RLFEELLPKE-----------SPAIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKFI 277
           +L                     A     +  S  +  R         + +   Y+    
Sbjct: 233 QLLVNSRKCIINAETDRFADVYAAATTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVET 292

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            L +                   ++   + G+F   NA  A       G+      + + 
Sbjct: 293 DLAETKFTLTTASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGIR 352

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ 396
            + + PGR E V T   G  I VDYAH   S+  +++ +R   T+ R+IVV G  GD+  
Sbjct: 353 HVTI-PGRMETVTTQKHGL-IVVDYAHNKASMLALMRFMRREFTTPRVIVVVGAPGDKGI 410

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTA 452
            +RP   +     AD A +T D+P  E+ + I  EI  GI       + + +R +AI+ A
Sbjct: 411 SRRPGFSESLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKEA 470

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I      DV+++ GKG +    +   +   + D  I R+++
Sbjct: 471 ISEAGPDDVVLLCGKGADAFQKIRGVDTPYAGDIVIARQVI 511


>gi|256617550|ref|ZP_05474396.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
 gi|256597077|gb|EEU16253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
          Length = 508

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 199/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q             +     I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 541

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 135/496 (27%), Positives = 224/496 (45%), Gaps = 35/496 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + ++  +S DSR I  G +++A+ G++  G  F   A+A GA AI+   A +    SA 
Sbjct: 38  SKLQVTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAVAILTDRAGAQIA-SAE 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  + P+L V   R      A+++Y +   ++  +TGT+GK++ +  ++ I      SS 
Sbjct: 97  VPQHVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTSYLIRSILAALERSSG 156

Query: 146 QIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG            + LTTP    +   ++ ++ + +  V +E SSH L   R+DG+  
Sbjct: 157 LIGTIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEVSSHALAYGRVDGLVF 216

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
               FTNL +DH+D H T   Y  A  +       +   A++  DD + +++  RA    
Sbjct: 217 DVAGFTNLTQDHLDLHGTMAEY--AATKAELFSSRRSKRAVVTVDDQWGRQIAARADVPV 274

Query: 265 CRVLSVGYQGKFIHLKKVC----------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            R+     +                                  + F F   LPGEF + N
Sbjct: 275 LRLQIQPTETPLEDPSDWRVLKSEPLGLGWRIELHGFEADGAERSFKFTTSLPGEFNIAN 334

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           + +A  +  A G+D+  +   L++       VPGR + +          VD+AH  ++L+
Sbjct: 335 SALAVLMVYASGVDTGALQRALDEHDPLSINVPGRMQLISQE---PVAVVDFAHNPDALQ 391

Query: 371 MILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +  +R   +   GR+I VFG  G RDQ KRPIMG +A   +D+ I+TDD+P  EDPE+
Sbjct: 392 RAMDAVRPNNNETRGRLITVFGATGQRDQTKRPIMGALAARGSDVVIITDDDPHDEDPEQ 451

Query: 428 IRAEIIHGIPGFIE----------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           IR ++  G    ++             R  AI  A+ +  K D +++AG+GHE    V  
Sbjct: 452 IRDQVFDGAAKAVKAGQLDTVLELVAPRAAAIDRAVALAGKDDAILIAGRGHENWQEVQ- 510

Query: 478 GEKKMSVDCDIIREIL 493
           G      D D +R  L
Sbjct: 511 GVNIALDDRDELRRAL 526


>gi|322373943|ref|ZP_08048478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
 gi|321277315|gb|EFX54385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
          Length = 481

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 117/491 (23%), Positives = 203/491 (41%), Gaps = 30/491 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           ++F ++I+Q   +   W       +S DSR +    +F A  G       F+  A+  G 
Sbjct: 15  RNFRDIIDQ-DHYYYSWTGVTFEHLSYDSRDVTPSSLFFA-KGAGFK-REFLENAVKTGL 71

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGK 126
              V    Y +           P ++V + ++ +SL A   Y    + +  LA TGT GK
Sbjct: 72  SFYVSEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGK 122

Query: 127 SSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A F   I ++S   +      T+        + LTTP  + L + +S     G+TH+
Sbjct: 123 TTAAYFAYNILKQSHKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFRMMSEAVDNGMTHL 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS      R+ G+    G F N+  DHI   +     F         LL      I
Sbjct: 183 IMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLENSQAVI 240

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + +   +   V +   +          +    H          +           D+   
Sbjct: 241 VNSGMDHFDFVAEEVADKDHDFYGKDSENTVQHSSGFSFKAKGKLA--------GDYDIQ 292

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F   NA+ A   C+ +G     + + + +   VPGR E +   + G +++VDYAH 
Sbjct: 293 LIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEILTQAN-GAKVFVDYAHN 350

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424
            +SL+ +L+ +     GRI ++ G  G++ + +R   G +     ++  I++ D+P  ED
Sbjct: 351 GDSLDKLLQVVTDHQKGRIALILGAPGNKGESRRKDFGHVLNTYPEVDVILSADDPNKED 410

Query: 425 PEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKM 482
           P  I  EI   I        +R EAI+TA+      +D LV+AGKG +   IV       
Sbjct: 411 PLTICQEIASHINREVRIIVDREEAIKTAMSETTGSKDALVIAGKGADAFQIVNGKHTDY 470

Query: 483 SVDCDIIREIL 493
           + D ++ ++ L
Sbjct: 471 AGDIEVAKKYL 481


>gi|259501351|ref|ZP_05744253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
 gi|259167204|gb|EEW51699.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
          Length = 505

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 107/493 (21%), Positives = 196/493 (39%), Gaps = 41/493 (8%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 23  ISYDSRDIKTNTLFFCKGKGFRP---TYLSYAKENGAICYVAEQPYPE-------GKGMH 72

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI-CQRSGLSSFQIG 148
            L+V N  K +SL ++  Y    +++  +A TGT GK++ A F++ I  + +G  +    
Sbjct: 73  ALIVSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFS 132

Query: 149 PT----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                          + LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 133 SVDDVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTY 192

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----------A 251
             G F N+  DHI  + H   + Y + K++L          A+    D            
Sbjct: 193 DLGFFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNP 252

Query: 252 YSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            S  +  R         R +   +      + +       +         + ++   + G
Sbjct: 253 DSIYLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIG 312

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   NA  A       G++     + ++ + + PGR E + T + G  + VDYAH   S
Sbjct: 313 DFNEINATAAIIGAGLAGVNYQDCYDGIKNVTI-PGRMETLTTANHGT-VIVDYAHNKAS 370

Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  ++  + +   S +IIVV G  GD+   +R    +     A+   +T D+P  ED + 
Sbjct: 371 MIALMSFMQKEFDSPKIIVVVGAPGDKGISRRAGFSESLSLYANQVFLTTDDPGFEDAQV 430

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI  GI       + + +R +AI  AI+     DV+++ GKG +    +   +    
Sbjct: 431 IADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICGKGADPYQKIRGVDTPYP 490

Query: 484 VDCDIIREILGLI 496
            D  + +E++  +
Sbjct: 491 TDIKVAQEVINKL 503


>gi|220912334|ref|YP_002487643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
 gi|219859212|gb|ACL39554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
          Length = 545

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 144/495 (29%), Positives = 223/495 (45%), Gaps = 29/495 (5%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            P    +  +  ++ +SR ++AG ++VA+ G    G  F+ QA+  GA A++   A +  
Sbjct: 43  VPGHAADVTVTGITLNSRSVEAGDLYVALPGASRHGADFVAQAVGAGAVAVLTDDAGARL 102

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-----NILAVTGTSGKSSVASFVQQ 135
             +    +  P+LVVD  R  +   ++ +YG          +  VTGT+GK++   F+  
Sbjct: 103 -LALGNDTPVPVLVVDKPRNVVGPLSAAIYGSTDGAEDDFTLFGVTGTNGKTTTTYFINS 161

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           + +  G  S  IG       +    + LTTP    +   L+ +  +G+   ++E SSH +
Sbjct: 162 LLRALGTRSGLIGTIEILAGTEPIPSLLTTPESTEVHGLLALMRERGLGAAAMEVSSHAI 221

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              R+DG+      FTNL +DH+D H T   YF  K  LF     +   A++  DD + +
Sbjct: 222 SYQRVDGVLFDVAGFTNLTQDHLDLHGTMDDYFATKAELFTP--ARARRAVVTVDDEWGR 279

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVY 313
            +   A      + + G       +            T+      +      LPG F V 
Sbjct: 280 RLAGTAGIPVTTLSTDGQAAADWAVATTEPRGLGTAFTLKGPDGAELRLHTGLPGSFNVA 339

Query: 314 NALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           NA +AA + +A G+D       V         VPGR + V          VD+AH +++L
Sbjct: 340 NAALAAVMVLAGGVDHAVLQEAVDTADPFTVAVPGRMQLVAEQ---PAAVVDFAHNTDAL 396

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              L+ +R      R+IVVFG  G RDQGKRP MG +A  LAD  I+TDD+P  ED   I
Sbjct: 397 ARALEAVRPPAPDSRLIVVFGATGQRDQGKRPAMGAVAARLADTVIITDDDPHDEDAAAI 456

Query: 429 RAEIIHGIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           RA+++ G              +E   R EAIR A+E+    D ++VAG+GHE    V  G
Sbjct: 457 RADVLAGAEHARSSESLPCEILEVFPRDEAIRRAVELAGPSDSILVAGRGHEVWQEVK-G 515

Query: 479 EKKMSVDCDIIREIL 493
                 D   +R  L
Sbjct: 516 VNLALDDRVELRSAL 530


>gi|307278242|ref|ZP_07559321.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
 gi|306504993|gb|EFM74184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
          Length = 516

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|257080909|ref|ZP_05575270.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
 gi|256988939|gb|EEU76241.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
          Length = 508

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 478

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 221/473 (46%), Gaps = 21/473 (4%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            +   +N+  ++S  I+   +FV   G   DGH +  QA+ +GA A++ +    +     
Sbjct: 13  LKSLPVNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAVIANRPLDI----- 67

Query: 85  TIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
               + P+++ D+  + L+L  A   +       + VTGT+GK++V+  + QI  ++  S
Sbjct: 68  ----DIPVIMTDSYYQSLALVKAYYGHPHQKIKHIGVTGTNGKTTVSHCLNQILNQTTTS 123

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           ++     + ++        TTP  + L      ++ +      +E SSH L Q R   + 
Sbjct: 124 AYIGTLGAKLAGSDYPLENTTPDGVTLLNLFHQMAQRETEFNLMELSSHALAQDRAGFVS 183

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L  G  TN+GRDH+DYH+T+ AY  AK++L + + P  +  I   D   +  + + +   
Sbjct: 184 LQIGIITNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGTAVINLDDPHAAAAIERASGRV 243

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                 +      +    V          + ++G+ FD    +P  F V NAL  A   +
Sbjct: 244 NVVTFGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNSQMPFTFNVENALAIAASLL 303

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++G  S+ +   L+ +    GR +F+  N  G    VDYAH ++ L  +L+++R  T GR
Sbjct: 304 SLGWQSSRIAAALQTIVAPDGRAQFLSLN-NGATGLVDYAHNADGLSKLLEDVRPYTKGR 362

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IE 441
           +IVV G  GDR Q     +G +   LAD A+ T DNP   D E I   +   +      E
Sbjct: 363 LIVVTGVTGDRIQDA-SGIGVLCSQLADTAVFTSDNPMGVDQEDIFRALTSQVSKVPHFE 421

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             +R EAI  A ++    D++VV GKG ET   ++NG+     D    ++ +G
Sbjct: 422 ISDRAEAIEFAKQLSVAGDLIVVCGKGSETHQYISNGK----GDR---QQYIG 467


>gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
 gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
          Length = 509

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 267

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S E +                      
Sbjct: 268 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 328 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 386

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI   I
Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 446

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 447 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506

Query: 493 LG 494
           + 
Sbjct: 507 IE 508


>gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
 gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
          Length = 509

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 113/482 (23%), Positives = 191/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 267

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S E +                      
Sbjct: 268 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 328 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLKFAK 386

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI   I
Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 446

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 447 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506

Query: 493 LG 494
           + 
Sbjct: 507 IE 508


>gi|227889301|ref|ZP_04007106.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850103|gb|EEJ60189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 509

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 103/491 (20%), Positives = 183/491 (37%), Gaps = 41/491 (8%)

Query: 33  VSSDSRHIQAGWIFVAI-VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +S DSR I+   +F     G +     ++  A   GA   V    Y              
Sbjct: 23  ISYDSRDIKTNTLFFCKGKGFRP---TYLSMAKDSGATCYVAEQPYPE-------GKGMH 72

Query: 92  ILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL-----SS 144
            LVV +  K ++L ++  Y    ++  ++A TGT GK++ A F++ +  +         S
Sbjct: 73  ALVVRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFS 132

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                            LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 133 SVDDIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTY 192

Query: 205 IAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             G F N+  DH   + H     Y + K++L          A+    D          + 
Sbjct: 193 DLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNP 252

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--------------LFPLPG 308
               + +          + +       +  +                          + G
Sbjct: 253 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 312

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   N   A       G +     + +  + + PGR E + + + G  + VDYAH   S
Sbjct: 313 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTI-PGRMEALPSKNHGT-VIVDYAHNKAS 370

Query: 369 LEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  ++  + R   + +IIVV G  GD+   +RP   +     AD A +T D+P  EDP  
Sbjct: 371 MMALMSFMQREFNTPKIIVVVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPMD 430

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI  GI         + +R +AI  AI M +K D++++ GKG +    +   +    
Sbjct: 431 IAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICGKGADPYQKIRGVDTPYP 490

Query: 484 VDCDIIREILG 494
            D  +   ++ 
Sbjct: 491 TDIKVAESVIN 501


>gi|323479850|gb|ADX79289.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Enterococcus faecalis 62]
          Length = 506

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 481 DLYQKVNGVDEPYAGDFALAKMII 504


>gi|307277046|ref|ZP_07558152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|312904314|ref|ZP_07763476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|306506290|gb|EFM75454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|310632410|gb|EFQ15693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|315030594|gb|EFT42526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4000]
 gi|315159715|gb|EFU03732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0312]
 gi|315162688|gb|EFU06705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0645]
 gi|315578755|gb|EFU90946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0630]
          Length = 514

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 489 DLYQKVNGVDEPYAGDFALAKMII 512


>gi|256854472|ref|ZP_05559836.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|257089097|ref|ZP_05583458.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
 gi|256710032|gb|EEU25076.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|256997909|gb|EEU84429.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
          Length = 506

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 481 DLYQKVNGVDEPYAGDFALAKMII 504


>gi|229546496|ref|ZP_04435221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|307289939|ref|ZP_07569868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
 gi|229308396|gb|EEN74383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|306499005|gb|EFM68494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
          Length = 511

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 486 DLYQKVNGVDEPYAGDFALAKMII 509


>gi|227554782|ref|ZP_03984829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
 gi|227176081|gb|EEI57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
          Length = 513

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEMPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|15903427|ref|NP_358977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae R6]
 gi|116516282|ref|YP_816820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|149021803|ref|ZP_01835810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|46577039|sp|Q8CWQ5|MURE_STRR6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122278334|sp|Q04JL8|MURE_STRP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15459034|gb|AAL00188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine Ligase
           [Streptococcus pneumoniae R6]
 gi|116076858|gb|ABJ54578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|147930039|gb|EDK81026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|301794540|emb|CBW36983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV104]
 gi|332074284|gb|EGI84761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 481

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 208/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++   F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
 gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
          Length = 527

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 152/471 (32%), Positives = 231/471 (49%), Gaps = 17/471 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + ++  V+ DSR +  G ++ A+ G    G  F   A+A GA A++   + + +      
Sbjct: 56  DVRVTGVTHDSRAVIPGDLYAALPGANVHGADFAVGAVAAGAVAVLTDPSGAAR---LAG 112

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSS 144
           R   P+LV D+ R+ L+  A+ +YG   +   +L VTGT+GK++ A  +    + +G ++
Sbjct: 113 RVAVPVLVTDDPRRDLAPVAAWVYGHPSQALTLLGVTGTNGKTTTAFLLDAGLRAAGHTT 172

Query: 145 FQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             +G   T        +  TTP    L    + +  +GVT   +E SSH L QHR+D ++
Sbjct: 173 GLLGTVQTRIGGTVVPSVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHRVDALR 232

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTNL +DH+D+H T + YF AK  LFE    K++       D      + R    
Sbjct: 233 FTGAAFTNLSQDHLDFHPTMEDYFAAKATLFEAGRSKDAVIC---VDDDWGRRLARQRPD 289

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                  G    +     V          +  +G   D    LPG F + NAL A  L  
Sbjct: 290 ARTYSVTGADADWWPEDVVAGPAGTVCRVLGPDGAKADLSVTLPGRFNLANALGALALLA 349

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+   +  E +  L  VPGR E V    +     VD+AHT +++  +L+ +R + +GR
Sbjct: 350 ATGVPLEVAAEGISSLTGVPGRMERV-DGGQPFLAVVDFAHTPDAVVTLLEAVRPLVTGR 408

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---- 439
           +IVV GCGGDRD+GKRP+MG  A  LAD+A+ T+DNPRSEDP  I  +I+ G        
Sbjct: 409 VIVVLGCGGDRDRGKRPLMGAAAARLADLAVFTNDNPRSEDPAVILDQIVAGAREVAGAG 468

Query: 440 --IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             + + +R  AI  A+      D +VVAGKGHET   V  G      D ++
Sbjct: 469 RFVVEPDRAAAIALAVAAAGPADAVVVAGKGHETGQNVA-GVITPFDDREV 518


>gi|313124624|ref|YP_004034883.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312281187|gb|ADQ61906.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 516

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 190/489 (38%), Gaps = 41/489 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR +Q   +F    G       ++  A   GA A V    Y          +    
Sbjct: 34  VSYDSRDVQNNSLFFC-KGAGFRP-TYLTMAKENGAIAYVAEQPYPE-------GTGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ----QICQRSGLSSFQIG 148
           L+V N  K ++L ++  Y + P++ L + G +G     +        + Q +G  +  + 
Sbjct: 85  LIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLS 143

Query: 149 P----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                          + LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE-----------SPAIIYADDA 251
             G F N+  DHI  + H   + Y + K++L                     A     + 
Sbjct: 204 DLGFFLNISPDHIGVNEHPNFEDYLHCKLQLLVNSRKCIINAETDRFADVYAAATTTTNP 263

Query: 252 YSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            S  +  R         + +   Y+     L +                   ++   + G
Sbjct: 264 DSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQMIG 323

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   NA  A       G+      + +  + + PGR E V T   G  I VDYAH   S
Sbjct: 324 DFNETNATGAIIGAGLAGMSYEDCAKGIRHVTI-PGRMETVTTQKHGL-IVVDYAHNKAS 381

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  +++ +R   T+ R+IVV G  GD+   +RP   +     AD A +T D+P  E+ + 
Sbjct: 382 MLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSESLTAEADKAYLTTDDPGFENAQD 441

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI  GI       + + +R +AI+ AI      DV+++ GKG +    +   +   +
Sbjct: 442 ICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGADAFQKIRGVDTPYA 501

Query: 484 VDCDIIREI 492
            D  I R++
Sbjct: 502 GDIVIARQV 510


>gi|295693699|ref|YP_003602309.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate--l-lysi ne ligase
           [Lactobacillus crispatus ST1]
 gi|295031805|emb|CBL51284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus ST1]
          Length = 523

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 190/490 (38%), Gaps = 39/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR IQ   +F    G       ++  A   GA   V    Y               
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149
           L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++  + Q +G  +  I  
Sbjct: 85  LIVRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144

Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      +  + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFN-------------AKMRLFEELLPKESPAIIYADDAY 252
            G F N+  DHI  ++                      +        +   A     +  
Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDEVYAAATTTTNPD 264

Query: 253 SKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           S  +  R +       + +   +  + + +K+                 + D+   + G+
Sbjct: 265 SIYLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPINGDYTLKMLGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G++     + +  + + PGR +   T   G  + VDYAH   S+
Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKKHGM-VVVDYAHNKASM 382

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             +++ +R      +IIV+ G  GD+   +RP   +     AD A +T D+P  EDP+ I
Sbjct: 383 MALMRFMRNEFNDPKIIVIVGAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGFEDPKSI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AI  AI M    DV+++ GKG +    +         
Sbjct: 443 AEEIDSGIDHSKCDVTIELDRNKAIHDAIAMATPDDVVLICGKGADAFQKIRGVNTPYPS 502

Query: 485 DCDIIREILG 494
           D  + ++++ 
Sbjct: 503 DIVVAQQVIN 512


>gi|332522134|ref|ZP_08398386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313398|gb|EGJ26383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 485

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 115/497 (23%), Positives = 215/497 (43%), Gaps = 32/497 (6%)

Query: 5   DLIY--KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           DL+   K+F E+I + S +   +     +++S DSR      +F  + G    G  ++  
Sbjct: 9   DLLKGDKNFREVIAEDSYY-YHYTGLNFSKLSYDSRDADNQTLFF-VKGANFKG-EYLQS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+ QG +A +    Y +           P ++V++ +  +S+ A   Y    + +  LA 
Sbjct: 66  ALNQGLQAYISEVDYEV---------GIPAIIVNDIKHAMSIIAMAFYDNPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S  ++      T+        ++LTTP  + L K ++   S
Sbjct: 117 TGTKGKTTSAYFAYHILKQSHKTAMLSTMNTTLDGQTFFKSQLTTPESLDLFKMMAECVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI---EHPNFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     ++K                 +          ++     +     
Sbjct: 234 ENSRAVIINSDMDHFHILKEQVAKQ-------DHDFYGQASDNSITDSQAFTFKATGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            ++   L G F   NA+ A   C+ +G     + + + +   VPGR E +     G +++
Sbjct: 287 GNYRTLLIGRFNQENAIAAGLACLRLGASHEDIQKGIAQ-TTVPGRMEVLNHPC-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SLE ++  +     G+I ++ G  G++ + +R    K+  +  ++  I+T D
Sbjct: 345 VDYAHNGDSLEKLVSVVEEHQKGQITLIIGSTGNKGESRRADFAKVINNHPNLSVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476
           +P  EDP+ I  EI   +   +     R +AI+  ++    ++D L++AGKG +   IV 
Sbjct: 405 DPNFEDPQTISEEIASYVSRQLTIEVEREQAIKLGLQSCQEEEDALIIAGKGADAYQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +   + D  I +  +
Sbjct: 465 GQKTDYAGDYTIAKAFI 481


>gi|300812318|ref|ZP_07092754.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496738|gb|EFK31824.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 516

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/521 (21%), Positives = 198/521 (38%), Gaps = 45/521 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           ++       ++ +  +      +  +      VS DSR +Q   +F    G       ++
Sbjct: 2   NISLNTCILILKEHHLLKSSAVQDTVQTRMEAVSYDSRDVQNNSLFFC-KGAGFRP-TYL 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A V    Y          +    L+V N  K ++L ++  Y + P++ L +
Sbjct: 60  TMAKENGAIAYVAEQPYPE-------GTGMHALIVRNVSKAMALLSAAFY-RFPQDDLFL 111

Query: 121 TGTSGKSSVASFVQ----QICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAK 172
            G +G     +        + Q +G  +  +                + LTTP  + L +
Sbjct: 112 VGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSSVDNILGPAPEDTFKSSLTTPESLDLFR 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAK 230
            +      G+TH+ +E SS    ++R+ G+    G F N+  DHI  + H   + Y + K
Sbjct: 172 DMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGVNEHPNFEDYLHCK 231

Query: 231 MRLFEELLPKE-----------SPAIIYADDAYSKEVMKRAHNAG---CRVLSVGYQGKF 276
           ++L                     A     +  S  +  R         + +   Y+   
Sbjct: 232 LQLLVNSRKCIINAETDRFADVYAAATTTTNPDSIYLFARDGFENPDLKKPIDFRYKSVE 291

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             L +                   ++   + G+F   NA  A       G+      + +
Sbjct: 292 TDLAETKFTLTTASSKAHKLPISGEYTLQMIGDFNETNATGAIIGAGLAGMSYEDCAKGI 351

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD 395
             + + PGR E V T   G  I VDYAH   S+  +++ +R   T+ R+IVV G  GD+ 
Sbjct: 352 RHVTI-PGRMETVTTQKHGL-IVVDYAHNKASMLALMRFMRREFTNPRVIVVVGAPGDKG 409

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRT 451
             +RP   +     AD A +T D+P  E+ + I  EI  GI       + + +R +AI+ 
Sbjct: 410 ISRRPGFSESLTAEADKAYLTTDDPGFENAQDICEEIDAGIDHSKCETVIELDREKAIKE 469

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           AI      DV+++ GKG +    +   +   + D  I R++
Sbjct: 470 AISEAGPNDVVLLCGKGADAFQKIRGVDTPYAGDIVIARQV 510


>gi|184201133|ref|YP_001855340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
 gi|183581363|dbj|BAG29834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
          Length = 546

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 150/497 (30%), Positives = 234/497 (47%), Gaps = 40/497 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V  +SR +Q G ++ A+ G +  G  F   A A GA A++   A       A +  +
Sbjct: 46  VTGVVLNSREVQPGDLYAALPGAQVHGARFAADAAAAGAVAVLTDPAGERLLDEAGV--S 103

Query: 90  TPILVVDNTRKFLSLFASRLYGKHP-----ENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            P+LV +  R ++   A+ +Y  HP     + + AVTGT+GK++   F   I +  G ++
Sbjct: 104 LPVLVSEQPRSWVGPVAAAVYDSHPGEEAGQELFAVTGTNGKTTTTYFTTAILRALGHTT 163

Query: 145 FQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
             IG            +RLTTP   ++   L+ +  +G+T  ++E SSH L+ HR+DG+ 
Sbjct: 164 GLIGTIEILAGDTPIPSRLTTPEAPHVHSLLALMRERGITATAMEVSSHALEFHRVDGVH 223

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN- 262
                FTNL +DH+D H + + YF AK +LF       +  ++  +D +S  + +RA   
Sbjct: 224 YGVAGFTNLTQDHLDLHGSMEEYFEAKAQLFTRQRTSRAVVVLSDEDPWSGAMARRAREE 283

Query: 263 -----------AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEF 310
                       G      G       L+ +          +      +      LPG+F
Sbjct: 284 LGDANVTTVALRGSEDAERGQDAAQWTLRSLTRRGIGSAFVLRHRDGRELRVHTGLPGDF 343

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTS 366
            V NA +A  + +  G++   +   L++       VPGR E VGT        VD+AH  
Sbjct: 344 NVANAALAVLMVLDSGVELETLQRALDEHDPLTASVPGRMELVGTRPT---SLVDFAHNP 400

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++L   L+++     GR+IVVFG  G RD GKRP+MG++A + AD+ IVTDD+P +EDP 
Sbjct: 401 DALVRALRSVDP-EDGRVIVVFGATGQRDTGKRPVMGRVAAEEADVVIVTDDDPHAEDPA 459

Query: 427 KIRAE----------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            IR +                  +    R  AIRTA+ M   +D ++VAG+GHETV  V 
Sbjct: 460 PIREQVAAGAREAVAAGARATDVLVIAPRATAIRTAVRMARAEDSVIVAGRGHETVQDVA 519

Query: 477 NGEKKMSVDCDIIREIL 493
            G      D   +RE L
Sbjct: 520 -GVDVPLDDRVELREAL 535


>gi|329576940|gb|EGG58423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TX1467]
          Length = 511

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 111/504 (22%), Positives = 199/504 (39%), Gaps = 27/504 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSIAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I   +            ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQITALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREIL 493
           +    V   ++  + D  + + I+
Sbjct: 486 DLYQKVNGVDEPYAGDFALAKMII 509


>gi|257415238|ref|ZP_05592232.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           AR01/DG]
 gi|257157066|gb|EEU87026.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           ARO1/DG]
          Length = 508

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 481 DLYQKVNGIDEPYAGDFALAEAFIN 505


>gi|139438500|ref|ZP_01772016.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
 gi|133776039|gb|EBA39859.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
          Length = 505

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 128/506 (25%), Positives = 207/506 (40%), Gaps = 27/506 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL  + Y +  E  + +   P    +++I   + DSR ++ G +FV   G       ++ 
Sbjct: 8   KLTLMRYIELLEEDDLVVSRPSASCDQRIEFATDDSRQVRPGTLFVC-KGRAFK-REYLL 65

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            AIA GA A V    Y +         + P ++V + R+ L++ A   YG     +   A
Sbjct: 66  SAIADGAVAYVSEVDYDV---------DLPAVIVSDIRRTLAVVADAFYGHPSGKVKVCA 116

Query: 120 VTGTSGKSSVASFVQQICQR------SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            TGT GKS+ + +++ I             +   G        A  ++LTTP    L   
Sbjct: 117 FTGTKGKSTCSFYLRGILANEAKLTGCHRPALNTGIEFDDGIEAGPSKLTTPESFLLQSR 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +++ +  G   + +EASS GL   R   I    G+FTN+G DHI   +      +     
Sbjct: 177 IAHAAEAGAPWLVMEASSQGLKYERTGKIAFEVGAFTNIGEDHISPIEHP-TLEDYFASK 235

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +         +    D   + +   +        S+  +   +    +         T+
Sbjct: 236 LKIFSQSRFAVVNLDMDKVDRVLEAASRCERTVTFSLTDERADVFALAIRNGDCGVVATV 295

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  D + P P +F V NAL A      +GI     + H  +   VPGR E   + S
Sbjct: 296 RTPRFTRDIVIPTPVKFNVSNALAAIACAEVLGIS-EEGIVHGFEGVFVPGRMELYPSVS 354

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADI 412
                 VD+AH   SLE +L+++R     R + VVFG  G +   +R  MG  A   AD 
Sbjct: 355 GKILGIVDFAHNGMSLETLLRDLRENYPERELAVVFGATGGKGVDRRTTMGIAAGKYADR 414

Query: 413 AIVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
            ++T+D+P  ED E I AEI       G   +    +R+ AI  A+    +  V++V GK
Sbjct: 415 IVITEDDPGPEDVEDICAEIARNVQAQGNDNWQIVTDRVAAIEAAVRETVRPAVVIVTGK 474

Query: 468 GHETVHIVTNGEKKMSVDCDIIREIL 493
           G E   +  NG +    D  I++  L
Sbjct: 475 GEEERMLRKNGPEPCERDGSILKRTL 500


>gi|307272480|ref|ZP_07553733.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
 gi|306510765|gb|EFM79782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
          Length = 513

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 199/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKVGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q             +     I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIIYGSQPASEVDYSFAVSSDDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|256964548|ref|ZP_05568719.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
 gi|256955044|gb|EEU71676.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
          Length = 508

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 199/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKVGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q             +     I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIIYGSQPASEVDYSFAVSSDDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|15805328|ref|NP_294020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
 gi|8134579|sp|Q9RXL3|MURE_DEIRA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|6457968|gb|AAF09877.1|AE001890_9 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
          Length = 490

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 133/505 (26%), Positives = 212/505 (41%), Gaps = 30/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL        +   +       + ++  V+ ++  +Q G  FVAI G K DGH F+
Sbjct: 1   MRLSDLAA-----ALQLPAPETDPQTDTEVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFM 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            Q           + A   +  +    S  P L V N R  L+  A+ L G       ++
Sbjct: 56  EQ------AQAAGAVAVLGEGLADGQTSPLPYLTVPNARAALADAAAALAGHPSRELKVV 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKAL 174
            VTGT GK++ +   + + + +GL++  +                   TTP    +   L
Sbjct: 110 GVTGTDGKTTTSWLTRHLLRSAGLATGLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTL 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             + + G     +EASSH L   R+ G+      +T+L  +H+D+H T   Y        
Sbjct: 170 REMVAAGAQATVLEASSHALSLDRVRGVDWDVAVWTHLSSEHLDFHGTLDNY----FADK 225

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +L+ +   A++  DD ++ ++  R    G    S   Q      + +   H+     + 
Sbjct: 226 RKLVERARFAVLNVDDPWTAQL--RGIAPGETTYSAENQHADWRAQDIEERHSGLHFRVV 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               DF    P+ G F V NAL        +G  +  +   L     VPGR E V   + 
Sbjct: 284 SPAGDFQAELPMIGRFNVANALAGMAAAHHLGATALQLQAGLASFRGVPGRMELVPGGAT 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413
             R+ VD+AHT  SLE  L  +R  T+G + VV G  G  RD  KR  +G++A  LAD A
Sbjct: 344 SPRVIVDFAHTPPSLEKALGTLRATTAGHLWVVIGSAGGPRDPYKRAPLGEVATRLADHA 403

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I+T+++ R    + I  E+  G        F+  G+R EAIR A+      D +++AGKG
Sbjct: 404 ILTEEDCRDTPLQDILNEMERGAREEGRSNFVSIGDRREAIRYAVTHAQPGDTVLLAGKG 463

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
            E        E     +    R +L
Sbjct: 464 PEDTLERAT-ETLPWNEVAEARAVL 487


>gi|307706212|ref|ZP_07643029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
 gi|307618402|gb|EFN97552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
          Length = 481

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 204/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   +     + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDGLFREIIDQ-GYYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P ++V + +K +SL A   YG   + +  LA 
Sbjct: 66  AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQEHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVADQDHDFYGSQSNN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKEVYPGDAAVAENYL 481


>gi|307289639|ref|ZP_07569583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|306499453|gb|EFM68826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|315166172|gb|EFU10189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1302]
          Length = 516

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 197/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGITATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 552

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/506 (25%), Positives = 228/506 (45%), Gaps = 25/506 (4%)

Query: 8   YKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            +D  EL  +  +  +   E   +  ++  +  ++AG  FVAI G    G  F   A  +
Sbjct: 20  QRDLAELARRFGVRSVGEVEGTTLTGITLATADLRAGEAFVAIRGVNRHGAEFAATAAER 79

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL----AVTG 122
           GA A++  +  +         +  PI++V++ R  L   ++ +YG  P++ +    A TG
Sbjct: 80  GAVAVITDAEGA----EIAASTGLPIVIVEDPRALLGDLSAWVYGTGPDDDIPQLLATTG 135

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+SV+  ++ I  + G+ +          +     +RLTTP        L+ +  +G
Sbjct: 136 TNGKTSVSHLLEGILGQLGVVTGLSSTAERHIAGEVIVSRLTTPEASEFHALLALMRERG 195

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           V  V+VE S+  L +HR+DG+      FTNL  DH+D +   + YF AK+ LF     + 
Sbjct: 196 VEAVAVEVSAQALTRHRVDGLVFDVAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARR 255

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT----ISVEG 297
               + +                    ++           V  +  +Q+ T     + +G
Sbjct: 256 GVVCLDSASGAEIVARAEIPVVTIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDG 315

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA---LVLEHLEKLHVVPGRFEFVGTNSR 354
           +    + P+ G     NA +A  + +  G         L+       +PGR + V +   
Sbjct: 316 RALTTVVPVIGRHMAANAGLAIVMLLETGYAWERLVDALDGGRIDASLPGRTQLV-SGPE 374

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           G  +YVD+ H+ ++ E  L  +R +T G+++++FG  GDRD  KR  MG+ A+  +DI +
Sbjct: 375 GPAVYVDFGHSPDAFEKTLAAVRRVTPGKVVMLFGADGDRDATKRHDMGRTAVLGSDILV 434

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           VTD +PR EDP+ IRA ++ G          +E      AI  A++++ + D ++ AG G
Sbjct: 435 VTDHHPRHEDPDAIRAVLVEGARRARPDAEILEFTPPERAILEAVKLVGEGDAILWAGPG 494

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           H+    +  G +      ++ R  L 
Sbjct: 495 HQDYRDI-RGVRTPYSARELSRRALR 519


>gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi]
          Length = 523

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 113/506 (22%), Positives = 185/506 (36%), Gaps = 55/506 (10%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            ++ ++ DSR ++ G +F A+ G    G  +I  AI  GA AIV            T   
Sbjct: 25  DVSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIVHDCPLD------TYVV 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 V + R  LS  A+  Y        ++ VTGT GKSS  SF+ Q+ +  G     
Sbjct: 79  GVYYARVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGF 138

Query: 147 IGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH--RLDG 201
           I                  TTP  + + + L+ +         +EASSHGL     RL  
Sbjct: 139 ISTVEYSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQD 198

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        N+  +H+++H + + Y   K  +F  L   +         ++     + A 
Sbjct: 199 VAFDVAVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDAS 258

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-------------------------- 295
               R  +      F                +                            
Sbjct: 259 AVYFREATHKPCFFFKRGTGAEQRTAACLERMPCTLLLVQTLPQISQALRLRFVLSTVQE 318

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAI---GIDSALVLEHLEKLHVVPGRFEFV 349
                +D      +P E       +AA   +     G   A   +H++ +  + GR + V
Sbjct: 319 PAQPAQDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQRV 378

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
               +   + +DYAHT +S E IL            R++V+FG  G+RD  KR + G IA
Sbjct: 379 DMG-QDFEVLIDYAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGERDTQKRAMQGAIA 437

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQD 460
              A + ++TD++PR EDP  I   I  G              +R+ A+R    +   QD
Sbjct: 438 SRYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLARAQD 497

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDC 486
           ++++ GKGHE   I  +  +    + 
Sbjct: 498 LVLLLGKGHEHSIIYAHTVQPYDEER 523


>gi|304384559|ref|ZP_07366905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328753|gb|EFL95973.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 507

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 116/518 (22%), Positives = 200/518 (38%), Gaps = 42/518 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+  +      L     +  ++     + + ++ DSR ++ G +F    G+ E    +
Sbjct: 1   MKLE--LGTVRTVLAEHHLLKKIESSTTTVNSGITYDSRKVRPGDMFFC-KGSFE--PAY 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           +  A   GA   V    Y          +    ++V N  + +++ ++  Y     +  I
Sbjct: 56  LKAAREAGATTYVAEREYPE-------GTGMTAIIVTNVTRAMAVLSATYYEFPQNDLFI 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           + +TGT GK+S A F   I  +         S               + LTTP  + L  
Sbjct: 109 IGITGTKGKTSSAYFAHAILNQQYPQQVALFSTIDRIVGPRPEDQFKSDLTTPESMDLFH 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +      G+ ++ +E SS    + R+ G+K   G F N+  DHI  ++ +        +
Sbjct: 169 DMRQAVDNGMKYLVMEVSSQAYLRDRVYGLKYDCGIFLNITPDHIGRNEHKDFEDYLHCK 228

Query: 233 LFEELLPKESP-------------AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           L   +  K                A     D     +       G   +    +     L
Sbjct: 229 LQLMVNSKRCIIDADTNRFEDVYGAARATTDPKQIYLFSADPANG--GVDYTIKNAEDDL 286

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                       T        ++   + G++   NA  A       G D    L+ L ++
Sbjct: 287 INNRFTIAATSSTKPALAITGEYDLNVAGDYNQSNATAAIIAAALAGADRDAALKPLSEI 346

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGK 398
            + PGR E++     G  ++VDYAH   SL  +LK ++     G+ IVV G  GD+   +
Sbjct: 347 VI-PGRMEYLAIPGHGV-VFVDYAHNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGISR 404

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIE 454
           R   GK   + AD+A +T D+P  EDP+ I A+I+  I        +  +R EAIR AI 
Sbjct: 405 RAGFGKALSEQADVAYLTTDDPGFEDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAIV 464

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                D++V+AGKG +    V   +     D  + +E+
Sbjct: 465 ESGPHDIVVLAGKGEDPYQKVRGVDTPWPTDMGVAQEV 502


>gi|270291605|ref|ZP_06197825.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
 gi|270279924|gb|EFA25762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
          Length = 507

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 114/519 (21%), Positives = 200/519 (38%), Gaps = 44/519 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGH-- 57
           MKL+  +      L     +  ++     + + ++ DSR ++ G +F         G+  
Sbjct: 1   MKLE--LGTVRTVLAEHHLLKKIESSTTTVNSGITYDSRKVRPGDMFFC------KGNFE 52

Query: 58  -LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             ++  A   GA   V    Y          +    ++V N  + +++ ++  Y     +
Sbjct: 53  PAYLKAAREAGATTYVAEREYPE-------GTGMTAIIVTNVTRAMAVLSATYYEFPQND 105

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-----STISSFAQDNRLTTPSPIY 169
             I+ +TGT GK+S A F   I  +       +  T              + LTTP  + 
Sbjct: 106 LFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFSTIDRIVGPRPEDQFKSDLTTPESMD 165

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYF 227
           L   +      G+ ++ +E SS    + R+ G+K   G F N+  DH   + H+  + Y 
Sbjct: 166 LFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYGLKYDCGIFLNITPDHIGRNEHKDFEDYL 225

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---------SVGYQGKFIH 278
           + K++L          A     +                +              +     
Sbjct: 226 HCKLQLMVNSKRCIIDADTNRFEDVYGAAKATTDPKQIYLFSADPANGGVDYTIKNAEDD 285

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L            T        ++   + G++   NA  A       G D    L+ L +
Sbjct: 286 LINNRFTIAAISSTKPALAITGEYDLNVAGDYNQSNATAAIIAAALAGADRDAALKPLNE 345

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQG 397
           + + PGR E++     G  ++VDYAH   SL  +LK ++     G+ IVV G  GD+   
Sbjct: 346 IVI-PGRMEYLAIPGHGV-VFVDYAHNYASLRALLKFVKHQYHDGKAIVVVGSPGDKGIS 403

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI 453
           +R   GK   + AD+A +T D+P  EDP+ I A+I+  I        +  +R EAIR AI
Sbjct: 404 RRAGFGKALSEQADVAYLTTDDPGFEDPQDIIAQIMAHIEPGTVEVHQVLDRREAIRQAI 463

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                 D++V+AGKG +    V   +     D  + +E+
Sbjct: 464 VESGPHDIVVLAGKGEDPYQKVRGVDTPWPTDMGVAQEV 502


>gi|227894010|ref|ZP_04011815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864211|gb|EEJ71632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 523

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 187/490 (38%), Gaps = 39/490 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR IQ   +F    G       ++  A   GA   V    Y               
Sbjct: 34  VSYDSRDIQTNTLFFC-KGAGFRP-TYLSMAKDNGAICYVAEQPYPE-------GKGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGP 149
           L+V +  K ++L ++  +    ++  ++A TGT GK++ A F++  + Q +G  +  I  
Sbjct: 85  LIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISS 144

Query: 150 T----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      +  + LTTP  + L + +      G+TH+ +E SS    ++R+ G+   
Sbjct: 145 VNDVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYD 204

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G F N+  DHI  ++          +L   +  ++                        
Sbjct: 205 LGFFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETAHFNEIYAAATTTTNPD 264

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------------DFLFPLPGE 309
            +     +       KV          + ++   F                D+   + G+
Sbjct: 265 SIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLYCASDKARKLDINGDYTLKMLGD 324

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F   N   A       G++     + +  + + PGR +   T S G  + VDYAH   S+
Sbjct: 325 FNESNGTAAIIGAGLAGLNHDQCAKGIRDVTI-PGRMQTERTKSHGM-VVVDYAHNKASM 382

Query: 370 EMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             ++  ++      +IIVV G  GD+   +RP   +     AD A +T D+P  EDP+ I
Sbjct: 383 MALMSFMQNEFNDPKIIVVVGAPGDKGISRRPGFSESLTAYADKAFLTTDDPGFEDPKSI 442

Query: 429 RAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             EI  GI         + +R +AI  AI M   +DV+++ GKG +    V         
Sbjct: 443 AEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPKDVVLICGKGADAFQKVRGVNTPYPS 502

Query: 485 DCDIIREILG 494
           D  + ++++ 
Sbjct: 503 DIVVAQKVIN 512


>gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
 gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
          Length = 509

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/482 (23%), Positives = 190/482 (39%), Gaps = 27/482 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 41  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 96

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 97  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 149

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + ++     G+TH+ +E SS      R+ 
Sbjct: 150 KTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEVSSQAYKTQRVY 209

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 210 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLKETA 267

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   K  +               S +                        
Sbjct: 268 DLFQIPTITYGRSEKSNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLAGGFNQENAA 327

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 328 SAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 386

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + AD+A +T D+P  EDP+KI  EI   I
Sbjct: 387 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADVAFLTADDPAFEDPQKIAEEINEAI 446

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                    + +R EAIR A+     QD +V+AGKG +    +   ++    D  I++ +
Sbjct: 447 TNPELIVHYEMDRPEAIRRALAESTSQDSVVIAGKGVDPYQKINGVDEPYEGDYAIVKRL 506

Query: 493 LG 494
           + 
Sbjct: 507 IE 508


>gi|315173998|gb|EFU18015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1346]
          Length = 516

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|284991689|ref|YP_003410243.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064934|gb|ADB75872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 523

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 156/483 (32%), Positives = 227/483 (46%), Gaps = 29/483 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+  S  +  G ++ A+ G +  G  +   A A+GA A++       +       + 
Sbjct: 39  VTGVTLASGEVGPGDLYAALPGARTHGARYAADAAARGAAAVLTDPTGREE----AAATG 94

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P+ VVD+ R  L   A+R+YG+      ++ +TGT+GK++ +  V+     +G  +  +
Sbjct: 95  LPVCVVDDPRGLLGAVAARVYGEPARRLQVIGITGTNGKTTTSYLVEAGLAAAGRGTGLV 154

Query: 148 GPT----------STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           G             T +     +  TTP    L   L+ ++  GV  V +E SSH L   
Sbjct: 155 GTVETRTRGRAADGTPTVTTLPSVRTTPEAPALHALLARMADSGVQTVVMEVSSHALVLG 214

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R+ GI   A  FTNLGRDH+D+H   + YF AK RLF+     E       DD Y + + 
Sbjct: 215 RVGGIPFAAAGFTNLGRDHLDFHTDIEDYFLAKARLFDGRAAVEVV---DVDDPYGRRLA 271

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNA 315
               +     +S            +  A       T+S  G         LPG F V NA
Sbjct: 272 GMLGDRRAVTVSTQGADADWTATGLGPAPGGGTAFTLSGPGGRSWPARVRLPGAFNVANA 331

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           ++A  L  A+G+     L  L +  VVPGR E V          VDYAHT +++   L  
Sbjct: 332 VLAVALLDAVGVPVETALTGLAE-TVVPGRMEPVDAGQ-PFVAVVDYAHTPDAVATALAA 389

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +R  T GR++ V GCGGDRD GKR  MG+ A   +D+ +VTDDNPRSEDP  IRA ++ G
Sbjct: 390 LRAATPGRVLTVLGCGGDRDPGKRAAMGEAAARGSDLLVVTDDNPRSEDPAAIRAAMLAG 449

Query: 436 IP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
           +P       +E G+R  AI  A+      D ++VAGKGHET   V  G      D  ++R
Sbjct: 450 VPADRRGDVVEVGDRRAAIAEAVARARPGDAVLVAGKGHETGQDVA-GTLHPFDDRAVLR 508

Query: 491 EIL 493
           E L
Sbjct: 509 EAL 511


>gi|198282530|ref|YP_002218851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667953|ref|YP_002424720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247051|gb|ACH82644.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520166|gb|ACK80752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 483

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 197/468 (42%), Gaps = 13/468 (2%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R ++ G ++V +     DG  F+ QA A GA A ++ S+            + P
Sbjct: 25  GIETDTRRLRPGMLYVGLNTRHGDGQQFLQQAWAAGAAAALLESSDEDVHGGQ----DHP 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +      R  L +   R Y         + G +G +  +S  + I + +   +  IG   
Sbjct: 81  VWQSPKARTLLGMALRRWYRWDEGLAPVIVGVTGTNGKSSVTRLIAELAPQPAMIIGTLG 140

Query: 152 TISSF-AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                       TTP P+ L + ++ L  QG   +++E SSH L   R+  +   A  FT
Sbjct: 141 HGRVDALISQANTTPDPVPLWQTMATLRDQGAKVIAMEVSSHALALERVAAVPFAAAVFT 200

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL RDH+D+H     Y                   +   D      +  A     R L  
Sbjct: 201 NLSRDHLDFHGDMARYG---ASKTRLFQTPGLRLAVLNGDDAFTGQIAAAMAPEVRQLRF 257

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +    +   + +           PL G   V N L A      +G   +
Sbjct: 258 GVGSGDYQAVALHPGASGTLLDLRTPAGSRRIRSPLIGNSNVQNLLAALATAEGMGWPVS 317

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                   L    GR++ +       ++ +DYAHT ++L  +L ++R +  G + VVFGC
Sbjct: 318 DAAIAGLDLP--EGRYQRLAPVPGKAQVMIDYAHTPDALRRVLTDLREVAKGAVTVVFGC 375

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIE 447
           GGDRD+GKRP MG+IA  LAD  I+TDDNPRSE PE I  +I+ G+          +R  
Sbjct: 376 GGDRDRGKRPEMGRIAERLADHVILTDDNPRSEAPEAIADDILGGMEQPGQATVIHDRAA 435

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           AIR AI      D +++AGKGHE    +    + +  D D+  E L +
Sbjct: 436 AIRAAIAASRAGDWVLIAGKGHERTQEIMGQRQPVPQDRDVATEALRV 483


>gi|312862991|ref|ZP_07723230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
 gi|311101486|gb|EFQ59690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
          Length = 481

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 208/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F ++I+Q + +   W     + +S DSR +    +F A  G       F+  
Sbjct: 9   EVLKKDHNFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLEN 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    V    Y +           P ++V + ++ +SL A   Y    + +  LA 
Sbjct: 66  AVQAGLSFYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        + LTTP  + L + ++    
Sbjct: 117 TGTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFKSNLTTPESLDLFRMMAEAVD 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI   +     F         LL 
Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLIFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLE 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+ +   +   V +   +          +    H          +          
Sbjct: 235 NSRAVIVNSGMNHFGFVAEEVADKDHDFYGKDSENTVKHSSGFSFKAKGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   L G+F   NA+ A   C+ +G     + + + +   VPGR E +   + G +++
Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQ-TSVPGRMEILTQAN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     ++   ++ D
Sbjct: 345 VDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDVTLSAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+TA+    + +D +V+AGKG +   IV 
Sbjct: 405 DPNKEDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADAFQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
                 + D ++ ++ L
Sbjct: 465 GKRTDYAGDIEVAKKYL 481


>gi|322517405|ref|ZP_08070279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124003|gb|EFX95559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 481

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 209/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F ++I+Q + +   W     + +S DSR +    +F A  G       F+  
Sbjct: 9   EVLKKDHNFRDIIDQDNYY-YSWTGVTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLEN 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    V    Y +           P ++V + ++ +SL A   Y    + +  LA 
Sbjct: 66  AVQAGLSFYVAEKDYQV---------GIPAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        + LTTP  + L + ++   +
Sbjct: 117 TGTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLDGKNFFKSTLTTPESLDLFRMMAEAVA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI   +     F         LL 
Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLE 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+ +   +   V +   +          +    H          +          
Sbjct: 235 NSRAVIVNSGMNHFGFVAEEVADKDHDFYGKDSENTVKHSSGFSFKAKGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   L G+F   NA+ A   C+ +G     + + + +   VPGR E +   + G +++
Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLSCLRLGASLEDIKQGIAQ-TSVPGRMEILTQAN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     ++   ++ D
Sbjct: 345 VDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRKDFGHVLNTYPEVDVTLSAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+TA+    + +D +V+AGKG +   IV 
Sbjct: 405 DPNKEDPLAICQEIASHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKGADAFQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
                 + D ++ ++ L
Sbjct: 465 GKRTDYAGDIEVAKKYL 481


>gi|315149406|gb|EFT93422.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0012]
          Length = 513

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 109/505 (21%), Positives = 197/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G +  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGTVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP +I  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAEICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|315170766|gb|EFU14783.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1342]
          Length = 516

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 198/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R++  +S DSR + A  +F    G      +++  A
Sbjct: 22  KEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 79

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 80  VKDGLEIYVSEVPYEVPAQLG--------IIVTDIKKVMAVLSMAFYDYPQNKLKLIGFT 131

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 132 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 191

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 192 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 249

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 250 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPA 309

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 310 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 368

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     GR+IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 369 GATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVA 428

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 429 VLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 488

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 489 DLYQKVNGVDEPYAGDFALAEAFIN 513


>gi|149003251|ref|ZP_01828147.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|169832669|ref|YP_001694935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|237650212|ref|ZP_04524464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237820905|ref|ZP_04596750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758711|gb|EDK65708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|168995171|gb|ACA35783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 481

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++   F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|320547339|ref|ZP_08041630.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448037|gb|EFW88789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
          Length = 483

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 122/500 (24%), Positives = 211/500 (42%), Gaps = 35/500 (7%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ K  +F E+I               +++S DSR + +  +F A  G       ++ Q
Sbjct: 9   DILKKDHNFREIIFHNHYSLDWEENPSFSKISFDSRDVDSSTLFFA-KGATFK-KEYLEQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAV 120
           A+  G    V    Y L         + P ++V + +K +SL A   YG       I+A 
Sbjct: 67  AVQLGLPFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAF 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        ++LTTP  + L K ++    
Sbjct: 118 TGTKGKTTAAYFTYNILKQSHKPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVD 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G+F N+  DH     H T + YF  K  L    
Sbjct: 178 NGMTHLIMEVSSQAYLVDRVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMTNS 237

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +      +++V  + H+          +        V               
Sbjct: 238 KAVVVNAGMDYFKVVTQQVADKPHDFYGSGSENTIENGRAFDFDVTGKLA---------- 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               +   L G F   NAL A   C+ +G     + + + +   VPGR E V   + G +
Sbjct: 288 --GHYDIQLIGSFNQENALAAGLACLRLGTSLKDIKKGISE-TSVPGRMEVVTQAN-GAK 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416
           ++VDYAH  +SLE +L  +     G++ ++ G  G++ + +R    +I     ++  I+T
Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQKGQLYLILGATGNKGESRRADFARIINAHQNLNVILT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474
            D+P  EDP+ I  EI   I   ++   +R +AI  A+ +   + D +++AGKG +   I
Sbjct: 404 ADDPNYEDPQAIAEEIASQITRSLDIQVDREKAIAKAMLLTKNENDAVIIAGKGADAYQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V       + D +I ++ L 
Sbjct: 464 VNGERTAYAGDLNIAKKYLN 483


>gi|306831982|ref|ZP_07465137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425908|gb|EFM29025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 483

 Score =  224 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 120/500 (24%), Positives = 207/500 (41%), Gaps = 35/500 (7%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++    +F E+I               +++S DSR      +F A  G       ++ Q
Sbjct: 9   DILKNDHNFREIIFHNHYSLDWKENPSFSKISFDSREADKSTLFFA-KGATFK-KEYLEQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI  G    V    Y L         + P ++V + +K +SL A   YG       I+A 
Sbjct: 67  AIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAF 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        ++LTTP  + L K ++    
Sbjct: 118 TGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQ 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G+F N+  DH     H T + YF  K  L    
Sbjct: 178 NGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANS 237

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   +  +++V    H+   +      +        V               
Sbjct: 238 KAVVVNAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLA---------- 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               +   L G F   NA+ A   C+ +G   A + + + +   VPGR E +   + G +
Sbjct: 288 --GHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRMEVITQTN-GAK 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416
           ++VDYAH  +SLE +L  +     G + ++ G  G++ + +R    ++     +   I+T
Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHI 474
            D+P  EDP+ I  EI   +   ++   +R +AI  A+   N + D +++AGKG +   I
Sbjct: 404 ADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V       + D +I +  L 
Sbjct: 464 VNGERTVYAGDLNIAKNYLN 483


>gi|224419204|ref|ZP_03657210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253828133|ref|ZP_04871018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313142708|ref|ZP_07804901.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511539|gb|EES90198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313131739|gb|EFR49356.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 434

 Score =  224 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 127/484 (26%), Positives = 200/484 (41%), Gaps = 61/484 (12%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           + I     ++ K   +S DSR +     F     +K     ++ +A  +G +  V     
Sbjct: 1   MKIVLEDSKDFKF--LSDDSREVSKDCAFFVTQSSK----KYLKEAQEKGCKFFVTPK-- 52

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                                       +S L  K     + +TGT+GK++ A+ +  I 
Sbjct: 53  --------------------------ELSSYL--KLNLQCIGITGTNGKTTTAAMIYSIL 84

Query: 138 QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              G     +G           +   LTTPS + +  A++    +G     +E SSH + 
Sbjct: 85  LDMGYKVGLLGTRGFFINGIQKRPKGLTTPSTLEIYTAINEAKQEGCEFFVMEVSSHAIT 144

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R++G++      TN+  DH+DYH+T + Y   K           S      D     +
Sbjct: 145 QNRIEGLEFALKILTNITSDHLDYHKTLENYIATK----------NSFFSNPNDKKLINK 194

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K A       L+ G +       K  ++       I+   +      PL G+  +YNA
Sbjct: 195 DEKNAQYPLQNTLTYGIESTSTFSIKAYSLKGGITAQITYGSQVATLDSPLLGKHNLYNA 254

Query: 316 LVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           L A G   +        +   LE    V GR +     ++   I VD+AHT + +E I +
Sbjct: 255 LAAIGAVQMLTQKPLQEIANQLENFGGVMGRMQI---INQKPLIVVDFAHTEDGMEQIFQ 311

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +       +I V+FG GGDRD+ KRP MG  A   A    +T DNPR+EDP+ I  EI+ 
Sbjct: 312 S---FLHQKIAVLFGAGGDRDKTKRPKMGFCASKYAQKIYITSDNPRNEDPKTIMQEILS 368

Query: 435 GIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           GIP       I + NR  AI+ AI  L + +VL+V GKG ET  I+ +       D + I
Sbjct: 369 GIPQSKRSRVILEENRALAIQKAIAELKEDEVLLVLGKGDETYQIIGD-RTLHFDDSEEI 427

Query: 490 REIL 493
           ++ L
Sbjct: 428 KKAL 431


>gi|332199575|gb|EGJ13650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 481

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 209/497 (42%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++   F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V++                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLREQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI + I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|194396806|ref|YP_002038162.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae G54]
 gi|194356473|gb|ACF54921.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus pneumoniae
           G54]
          Length = 481

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++   F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|262364615|gb|ACY61172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D182038]
          Length = 370

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 125/371 (33%), Positives = 172/371 (46%), Gaps = 12/371 (3%)

Query: 132 FVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            + Q  Q  G +S  +G               TT S + +   L  L  QG T  ++E S
Sbjct: 1   MLAQWSQALGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVS 60

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           SHGL Q R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       ADD
Sbjct: 61  SHGLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIIN--ADD 118

Query: 251 AYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +  + +   A    +      G+ G ++   KV    N   +       + +    L
Sbjct: 119 DVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRL 178

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F V N LVA    +  G   A +L     L  V GR E          + VDYAHT 
Sbjct: 179 MGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTP 237

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++LE  L   R   +G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+
Sbjct: 238 DALEKALAAARLHCTGKLWCVFGCGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQ 297

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I A+I+ G+           R EA+ +AI    + DV+++AGKGHE   +V N      
Sbjct: 298 AIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKGHEDYQLVGNRRLDY- 356

Query: 484 VDCDIIREILG 494
            D   +  +LG
Sbjct: 357 SDRVTVARLLG 367


>gi|168491578|ref|ZP_02715721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574296|gb|EDT94824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
          Length = 481

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++   F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQSYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGNFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGVDCYQIIQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKESYPGDTAVAENYL 481


>gi|255971128|ref|ZP_05421714.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
 gi|255962146|gb|EET94622.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
          Length = 480

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 108/482 (22%), Positives = 193/482 (40%), Gaps = 27/482 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F    G      +++  A+  G E  V    Y +       
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI---CQRSG 141
                 ++V + +K +++ +   Y      +  +  TGT GK++ A F + I     +  
Sbjct: 65  ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +      ++        + LTTP  + L + ++   + G+TH  +E SS     +R+  
Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G F N+  DHI   +     F+       +L+      ++  +  Y   + + A 
Sbjct: 179 LFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQ 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALV 317
                 +  G Q                   I                  G        +
Sbjct: 237 QQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +A +   +   S    +       VPGR E + TN+ G  +YVDYAH  +SL+ +L  +R
Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLTFVR 355

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
              + GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI  EI   I
Sbjct: 356 EEHSDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHI 415

Query: 437 PG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                     +R EAI  A+ +     D +V+AGKG +    V   ++  + D  +    
Sbjct: 416 TKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAEAF 475

Query: 493 LG 494
           + 
Sbjct: 476 IN 477


>gi|238853708|ref|ZP_04644075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300362910|ref|ZP_07059080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
 gi|238833644|gb|EEQ25914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300352960|gb|EFJ68838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
          Length = 523

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 106/527 (20%), Positives = 193/527 (36%), Gaps = 45/527 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI----NEVSSDSRHIQAGWIFVAI-VGNKED 55
           M    +       ++ +  +      +  +    N +S DSR I+   +F     G +  
Sbjct: 1   MSDSSISLNTCILILKEHHLLKSSAVQDAVPTKMNYISYDSRDIKTNTLFFCKGKGFRP- 59

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              ++  A   GA   V    Y               LVV +  K ++L ++  Y    +
Sbjct: 60  --TYLSMAKDSGATCYVAEQPYPE-------GKGMHALVVRDVTKAMALLSAAFYRFPQD 110

Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGL-----SSFQIGPTSTISSFAQDNRLTTPSPI 168
           +  ++A TGT GK++ A F++ +  +         S               + LTTP  +
Sbjct: 111 DLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDDIVGPKPEDKFKSSLTTPESL 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAY 226
            L + +      G+TH+ +E SS    ++R+ G+    G F N+  DH   + H     Y
Sbjct: 171 DLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADY 230

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K++L          A+    D          +     + +          + +    
Sbjct: 231 LHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNPDSIYLFARNDFENPNLKQPIDFRF 290

Query: 287 NKQQVTISVEGKDFDF--------------LFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              +  +                          + G+F   N   A       G   A  
Sbjct: 291 QSVETDMKETEFKLFCASEKAKKLPIAGDYTLQMIGDFNEMNGTAAIIGAGLAGESYAEC 350

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391
            + +  + + PGR E + + + G  + VDYAH   S+  ++  + R   + +IIVV G  
Sbjct: 351 AKGIRHVTI-PGRMETLPSKNHGT-VIVDYAHNKASMIALMSFMQREFNNPKIIVVVGAP 408

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447
           GD+   +RP   +     A+ A +T D+P  EDP  I  EI  GI         + +R +
Sbjct: 409 GDKGVSRRPGFSESLTAYANKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREK 468

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AI  AI M NK D++++ GKG +    +   +     D  +   ++ 
Sbjct: 469 AIHDAIAMSNKDDIVLICGKGADPFQKIRGVDTPYPTDIKVAESVIN 515


>gi|325684938|gb|EGD27082.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 516

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 189/489 (38%), Gaps = 41/489 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR +Q   +F    G       ++  A   GA A V    Y          +    
Sbjct: 34  VSYDSRDVQNNSLFFC-KGAGFRP-TYLTMAKENGAIAYVAEQPYPE-------GTGMHA 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ----QICQRSGLSSFQIG 148
           L+V N  K ++L ++  Y + P++ L + G +G     +        + Q +G  +  + 
Sbjct: 85  LIVRNVSKAMALLSAAFY-RFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLS 143

Query: 149 P----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                          + LTTP  + L + +      G+TH+ +E SS    ++R+ G+  
Sbjct: 144 SVDNILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTY 203

Query: 205 IAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFEELLPKE-----------SPAIIYADDA 251
             G F N+  DHI  + H   + Y + K++L                     A     + 
Sbjct: 204 DLGFFLNISPDHIGVNEHPNFEDYLHCKLQLLVNSRKCIINAETDRFADVYAAATTTTNP 263

Query: 252 YSKEVMKRAHNAG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            S  +  R         + +   Y+     L +                   ++   + G
Sbjct: 264 DSIYLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQMIG 323

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +F   NA  A       G+      + +  + + PGR E V T   G  I VDYAH   S
Sbjct: 324 DFNETNATGAIIGAGLAGMSYEDCAKGIRHVTI-PGRMETVTTQKHGL-IVVDYAHNKAS 381

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  +++ +R   T+ RIIVV G  GD+   +R    +     AD A +T D+P  E+ + 
Sbjct: 382 MLALMRFMRREFTNPRIIVVVGAPGDKGISRRQGFSESLTAEADKAYLTTDDPGFENAQD 441

Query: 428 IRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           I  EI  GI       + + +R +AI+ AI      DV+++ GKG +    +   +   +
Sbjct: 442 ICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCGKGADAFQKIRGVDTPYA 501

Query: 484 VDCDIIREI 492
            D  I R++
Sbjct: 502 GDIVIARQV 510


>gi|116630287|ref|YP_815507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|282852925|ref|ZP_06262266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
 gi|116095869|gb|ABJ61021.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus gasseri ATCC
           33323]
 gi|282556033|gb|EFB61654.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
          Length = 523

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 106/527 (20%), Positives = 193/527 (36%), Gaps = 45/527 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI----NEVSSDSRHIQAGWIFVAI-VGNKED 55
           M    +       ++ +  +      +  +    N +S DSR I+   +F     G +  
Sbjct: 1   MSDSSISLNTCILILKEHHLLKSSAVQDAVPTKMNYISYDSRDIKTNTLFFCKGKGFRP- 59

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
              ++  A   GA   V    Y               LVV +  K ++L ++  Y    +
Sbjct: 60  --TYLSMAKDSGATCYVAEQPYPE-------GKGMHALVVRDVTKAMALLSAAFYRFPQD 110

Query: 116 N--ILAVTGTSGKSSVASFVQQICQRSGL-----SSFQIGPTSTISSFAQDNRLTTPSPI 168
           +  ++A TGT GK++ A F++ +  +         S               + LTTP  +
Sbjct: 111 DLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVDDIVGPKPEDKFKSSLTTPESL 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAY 226
            L + +      G+TH+ +E SS    ++R+ G+    G F N+  DH   + H     Y
Sbjct: 171 DLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLGFFLNITPDHIGPNEHPNFADY 230

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K++L          A+    D          +     + +          + +    
Sbjct: 231 LHCKLQLMVNSRKCIINAMSDHFDEIYAAATTTTNPDSIYLFARNDFENPNLKQPIDFRF 290

Query: 287 NKQQVTISVEGKDFDF--------------LFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              +  +                          + G+F   N   A       G   A  
Sbjct: 291 QSVETDMKETEFKLFCASEKAKKLPIAGDYTLQMIGDFNEMNGTAAIIGAGLAGESYAEC 350

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391
            + +  + + PGR E + + + G  + VDYAH   S+  ++  + R   + +IIVV G  
Sbjct: 351 AKGIRHVTI-PGRMETLPSKNHGT-VIVDYAHNKASMIALMSFMQREFNNPKIIVVVGAP 408

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIE 447
           GD+   +RP   +     A+ A +T D+P  EDP  I  EI  GI         + +R +
Sbjct: 409 GDKGVSRRPGFSESLTAYANKAFLTTDDPGFEDPMDIAQEIDAGIDHEKVDVTIELDREK 468

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AI  AI M NK D++++ GKG +    +   +     D  +   ++ 
Sbjct: 469 AIHDAIAMSNKDDIVLICGKGADPFQKIRGVDTPYPTDIKVAESVIN 515


>gi|163785113|ref|ZP_02179819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879617|gb|EDP73415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 314

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 119/311 (38%), Positives = 172/311 (55%), Gaps = 7/311 (2%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-I 245
           +E SSH   Q R+ G+    G FTNL +DH+DYH+  ++YF AK   F+ +L K   A  
Sbjct: 1   MEVSSHAAHQMRIYGLNFEGGIFTNLTQDHLDYHKDMESYFKAKKMFFDYILEKNKKAVF 60

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D +  E + R       V+S G + +   +  +         T+S +GK F+    
Sbjct: 61  SINVDDFYGERLYRQLKNIANVISYGRKSEEFKIIDMQTQPEGCFFTVSFQGKRFNLYSK 120

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F +YN   A       GID   + E   KL  + GRFE V +      +  DYAHT
Sbjct: 121 LRGDFNIYNISAAFSFLARYGIDIEFLKEATAKLKPIRGRFEIVYSK--DFLVVNDYAHT 178

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE ILK+I+ +  GR+IVVFG GGDRD+ KRP MGKIA +LAD+ ++T DNPRSEDP
Sbjct: 179 PDALENILKSIQKLKRGRLIVVFGAGGDRDKTKRPKMGKIAEELADVIVLTSDNPRSEDP 238

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + I   I  G+      +E  +R +AI+ AI+M  + DV+++AGKGHET  I+ +     
Sbjct: 239 KDIIENIKAGMENKKPLLEIIDREQAIKEAIKMAKENDVVLIAGKGHETYQIIGDN-IYH 297

Query: 483 SVDCDIIREIL 493
             D D+ ++ L
Sbjct: 298 FDDSDVAKKYL 308


>gi|288905963|ref|YP_003431185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Streptococcus gallolyticus UCN34]
 gi|288732689|emb|CBI14261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gallolyticus UCN34]
          Length = 483

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 115/498 (23%), Positives = 203/498 (40%), Gaps = 31/498 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++    +F E+I               +++S DSR      +F A  G       ++ Q
Sbjct: 9   DILKNDHNFREIIFHNHYSLDWKENPSFSKISFDSREADKSTLFFA-KGATFK-KEYLEQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI  G    V    Y L         + P ++V + +K +SL A   YG       I+A 
Sbjct: 67  AIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAF 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        ++LTTP  + L K ++    
Sbjct: 118 TGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQ 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G+F N+  DHI      +          + LL 
Sbjct: 178 NGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPI---EHPTFEDYFYHKRLLM 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A++         ++ +                +         + +           
Sbjct: 235 ANSKAVVVNAGMDYFNIVAQQVANTP-------HDFYGKGSDNTIENGRAFDFDVTGKLA 287

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G   A + + + +   VPGR E +   + G +++
Sbjct: 288 GHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRMEVITQTN-GAKVF 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTDD 418
           VDYAH  +SLE +L  +     G + ++ G  G++ + +R    ++     +   I+T D
Sbjct: 346 VDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILTAD 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP+ I  EI   +   ++   +R +AI  A+   N + D +++AGKG +   IV 
Sbjct: 406 DPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQIVN 465

Query: 477 NGEKKMSVDCDIIREILG 494
                 + D +I +  L 
Sbjct: 466 GERTAYAGDLNIAKNYLN 483


>gi|227514106|ref|ZP_03944155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087477|gb|EEI22789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 518

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 114/503 (22%), Positives = 195/503 (38%), Gaps = 37/503 (7%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L +    +R+     V  +S+ +Q+  +F    G       ++ +AI +GA A V   
Sbjct: 23  HGLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQ 80

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
           +Y         ++    L+V N ++ ++L ++  YG    +   + +TGT GK+S A F 
Sbjct: 81  SY---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFA 131

Query: 134 QQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                        +     TS        ++LTTP  + L + L      G+TH+ +E S
Sbjct: 132 ATALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVS 191

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S      R+  +    G F N+  DH+  ++          +    L           D 
Sbjct: 192 SQSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDH 251

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                   +   A  ++   G  G    L     I +      + +              
Sbjct: 252 FEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLD 311

Query: 311 QVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             Y + VA          A +C AIG      ++       + GR E + T   G  +YV
Sbjct: 312 GEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGT-VYV 370

Query: 361 DYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415
           DYAH   S++ +L  ++         +I VV G  G++   +RP +GK  A +  +  I+
Sbjct: 371 DYAHDYASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVIL 430

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T D+P  EDP+ I AEI   I            +R EAI TAI+     D++V+AGKG +
Sbjct: 431 TTDDPAFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKGTD 490

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V   +     D  + R+++
Sbjct: 491 QYQKVAGVDTPYPGDIAVARQVI 513


>gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
 gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
          Length = 544

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 153/482 (31%), Positives = 236/482 (48%), Gaps = 19/482 (3%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS--LQDFSA 84
           +  ++ V+ DS  ++ G +  A+ G    G  F   A+A GA A++  +  +  +     
Sbjct: 67  DVIVHGVTHDSHAVRPGDLHAALPGAHTHGAAFAAAAVAGGAVAVLTDAEGARRIAAMPP 126

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGL 142
                 P+LV D+ R+ L+  A+R+YG       +L VTGT+GK++ A  +    + +G 
Sbjct: 127 GPPGEVPVLVSDDPRRDLAPVAARIYGDPSAALRLLGVTGTNGKTTTAFLLDAGLRAAGH 186

Query: 143 SSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           ++  IG   T  +  +     TTP    L   L+ +  +GV   ++E SSH L  HR D 
Sbjct: 187 TTGLIGTIETRIADERLASARTTPEASDLQALLATMVERGVGAATMEVSSHALALHRADA 246

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      FTNL +DH+D+H + + YF AK  LF+    + + A+I   D + + + +R  
Sbjct: 247 LHFAGAVFTNLSQDHLDFHSSMEDYFAAKASLFDP--ARTAVAVIGVADRWGRRLAERHP 304

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAG 320
            A    +           + V        +          D   PLPG F V N L A  
Sbjct: 305 GAITFAV---EGPADWTARDVSYGPTGTLLRAEGPDGLRVDLSVPLPGAFNVANTLGALA 361

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +AIG+  A     +  L  VPGR E V          VD+AHT +++  +L+ +R + 
Sbjct: 362 LLVAIGVPPATAAAGIGSLPGVPGRMERVDAGQ-PFLALVDFAHTPDAVTTLLETVRPLV 420

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-- 438
            GR+IVV GCGGDRD+GKRP+MG  A  LAD+AI+T+DNPRSEDP +I A+++ G+    
Sbjct: 421 KGRVIVVLGCGGDRDRGKRPLMGAAAATLADVAILTNDNPRSEDPAEILAQMLAGVTALS 480

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                + + +R  AI  A+     QD +VVAGKGHE+      G      D   +R  L 
Sbjct: 481 ASATVLVEPDRAAAIAAAVAEAGPQDAVVVAGKGHESGQE-QAGVVTPFDDRVALRAALS 539

Query: 495 LI 496
            +
Sbjct: 540 SV 541


>gi|111221625|ref|YP_712419.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
 gi|111149157|emb|CAJ60840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
          Length = 476

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 154/470 (32%), Positives = 233/470 (49%), Gaps = 17/470 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL-QDFSATIRS 88
           +  V+ DSR +  G ++ A+ G    G  F   AIA+GA A++  +  +     +    +
Sbjct: 2   VRGVTHDSRRVAPGDLYAALPGAHVHGADFAAAAIARGAVAVLTDAEGARRIAAAGGPAA 61

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+LV  + R+ L+  A+R++G       +L VTGT+GK++ A  +    + +G ++  
Sbjct: 62  ALPVLVSADPRRDLAPVAARIHGDPSAGLRLLGVTGTNGKTTTAFLLDAGLRAAGHTTGL 121

Query: 147 IGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG   T  +  +     TTP    L   L+ +  +GV   ++E SSH L QHR D +   
Sbjct: 122 IGTVETRIAGDRLASAHTTPEASDLQALLATMVERGVDAATMEVSSHALAQHRADALHFA 181

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              FTNL +DH+D+H T   YF AK  LF     + + A+I   D + + +  R      
Sbjct: 182 GALFTNLSQDHLDFHPTMADYFEAKASLFVP--GRAAAAVIGVGDEWGRRLAARRP--DA 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +V     +            + +     G+  +   PLPG F + NAL A  L +A+
Sbjct: 238 VTFAVDGPADWTARDVTAGPTGSELLAAGPGGERVELSVPLPGVFNIANALGALALLVAV 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D A     +  L  VPGR E V          VD+AHT +++  +L  +R +  GRII
Sbjct: 298 GVDPAAAAAGIGALPGVPGRMERVDAGQ-PFLALVDFAHTPDAVTTLLATVRPLVKGRII 356

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------G 438
           VV GCGGDRD+GKRP+MG  A  LAD+AI+T+DNPRSEDP  I A ++ G+P        
Sbjct: 357 VVLGCGGDRDRGKRPLMGAAAATLADLAILTNDNPRSEDPADILAAMLAGVPTAARAAGR 416

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
            + + +R  AI  A+     QD +VVAGKGHE+      G      D  +
Sbjct: 417 VLVEPDRAAAIAAAVAAAGPQDAVVVAGKGHESGQE-QAGVVTPFDDRVV 465


>gi|306834104|ref|ZP_07467224.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
 gi|304423677|gb|EFM26823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
          Length = 483

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 120/500 (24%), Positives = 207/500 (41%), Gaps = 35/500 (7%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++    +F E+I               +++S DSR      +F A  G       ++ Q
Sbjct: 9   DILKNDHNFREIIFHNHYSLDWKENPSFSQISFDSREADKSTLFFA-KGATFK-KEYLEQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI  G    V    Y L         + P ++V + +K +SL A   YG       I+A 
Sbjct: 67  AIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAF 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S   +      T+        ++LTTP  + L K ++    
Sbjct: 118 TGTKGKTTAAYFAYNILKQSHRPAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQ 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G+F N+  DH     H T + YF  K  L    
Sbjct: 178 NGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANS 237

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   +  +++V    H+   +      +        V               
Sbjct: 238 KAVVVNAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLA---------- 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               +   L G F   NA+ A   C+ +G   A + + + +   VPGR E +   + G +
Sbjct: 288 --GHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRMEVITQTN-GAK 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416
           ++VDYAH  +SLE +L  +     G + ++ G  G++ + +R    ++     +   I+T
Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHI 474
            D+P  EDP+ I  EI   +   ++   +R +AI  A+   N + D +++AGKG +   I
Sbjct: 404 ADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V       + D +I +  L 
Sbjct: 464 VNGERTAYAGDLNIAKSYLN 483


>gi|222152603|ref|YP_002561778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus uberis 0140J]
 gi|222113414|emb|CAR41085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus uberis 0140J]
          Length = 482

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 125/498 (25%), Positives = 215/498 (43%), Gaps = 32/498 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +L+ K  +F E+I+Q   +   +      ++S DSR + A  +F A  G +     ++ +
Sbjct: 9   ELLKKDHNFREVIHQEHYY-FNYSGLSFQKLSYDSREVDADTLFFA-KGAQFK-VDYLKK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG +A V    Y L         + P ++V + +K +S+ A   YG   E +  LA 
Sbjct: 66  AIDQGLQAYVSEIDYQL---------SIPAIIVSDIKKAMSIIAMTFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I +++   +      T+        ++LTTP  + L K ++   S
Sbjct: 117 TGTKGKTTAAYFAYHILKQNYKPAMFSTMNTTLDGQTFFKSQLTTPESLDLFKMMASCVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGMTHIIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A++         ++         V                A+   Q    SV G+ 
Sbjct: 234 ENSRAVVINSGMDHFNILAEQVADKDHVFYGDQSE--------NALTESQAFAFSVNGQI 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                            +AAGL       S L +        VPGR E V   + G +++
Sbjct: 286 AGHYDIQLIGRFNQENAIAAGLACQKLGASHLDIHEGIAQTTVPGRMEVVSHPN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SLE ++  + T   G I ++ G  G++ + +R   G++  +  ++  I+T D
Sbjct: 345 VDYAHNGDSLEKLVSVVETHQKGLISLIIGSTGNKGESRRADFGRVINNHPNLNVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVT 476
           +P  EDPE I  EI   +   +    +R +AI   ++  +   D L++AGKG +   IV 
Sbjct: 405 DPNFEDPETICQEIASHVNRHVSIIVDRQDAIIEGLKYCHTSGDALIIAGKGADAYQIVN 464

Query: 477 NGEKKMSVDCDIIREILG 494
             +++ + D  I ++ L 
Sbjct: 465 GKKEEYAGDLAIAKKALS 482


>gi|307708388|ref|ZP_07644854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
 gi|307615487|gb|EFN94694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
          Length = 481

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 204/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   +     + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYSHVIFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P ++V + +K +SL A   YG   + +  LA 
Sbjct: 66  AISQGLGWYVAEKDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S A+I   D     V+K                    ++   A        ++ +   
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQSDN--QIENSKAFSFSATGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIADEIRSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKEAYPGDAAVAENYL 481


>gi|256761439|ref|ZP_05502019.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
 gi|256682690|gb|EEU22385.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
          Length = 480

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/482 (22%), Positives = 193/482 (40%), Gaps = 27/482 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F    G      +++  A+  G E  V    Y +       
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI---CQRSG 141
                 ++V + +K +++ +   Y      +  +  TGT GK++ A F + I     +  
Sbjct: 65  ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +      ++        + LTTP  + L + ++   + G+TH  +E SS     +R+  
Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G F N+  DHI   +     F+       +L+      ++  +  Y   + + A 
Sbjct: 179 LFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQ 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALV 317
                 +  G Q             +     I                  G        +
Sbjct: 237 QQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +A +   +   S    +       VPGR E + TN+ G  +YVDYAH  +SL+ +L  +R
Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLTFVR 355

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI  EI   I
Sbjct: 356 EEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHI 415

Query: 437 PG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                     +R EAI  A+ +     D +V+AGKG +    V   ++  + D  +    
Sbjct: 416 TKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAEAF 475

Query: 493 LG 494
           + 
Sbjct: 476 IN 477


>gi|293384988|ref|ZP_06630822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|293389258|ref|ZP_06633720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|312905977|ref|ZP_07764990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|312909323|ref|ZP_07768179.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
 gi|291077666|gb|EFE15030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|291081422|gb|EFE18385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|310627972|gb|EFQ11255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|311290347|gb|EFQ68903.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
          Length = 513

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 197/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R+I  +S DSR + A  +F    G      +++  A
Sbjct: 19  KEDLLKEFISPEGWHLTLSDTLGQREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 76

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 77  VKDGLEIYVSEVPYEVSAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 128

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 129 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 188

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 189 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 247 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 306

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 307 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 365

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     G +IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 366 GATVYVDYAHNYDSLKNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVA 425

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 426 VLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 485

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 486 DLYQKVNGVDEPYAGDFALAEAFIN 510


>gi|256959800|ref|ZP_05563971.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
 gi|256950296|gb|EEU66928.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
          Length = 508

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 197/505 (39%), Gaps = 27/505 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ + K+F               +R+I  +S DSR + A  +F    G      +++  A
Sbjct: 14  KEDLLKEFISPEGWHLTLSDTLGQREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENA 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           +  G E  V    Y +             ++V + +K +++ +   Y      +  +  T
Sbjct: 72  VKDGLEIYVSEVPYEVSAQLG--------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFT 123

Query: 122 GTSGKSSVASFVQQI---CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GT GK++ A F + I     +   +      ++        + LTTP  + L + ++   
Sbjct: 124 GTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAV 183

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+TH  +E SS     +R+  +    G F N+  DHI   +     F+       +L+
Sbjct: 184 ANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLI 241

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG- 297
                 ++  +  Y   + + A       +  G Q                   I     
Sbjct: 242 THSKVIVLNHEADYFPLLKETAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPA 301

Query: 298 ---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                        G        ++A +   +   S    +       VPGR E + TN+ 
Sbjct: 302 DALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTN 360

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G  +YVDYAH  +SL+ +L  +R     G +IV+ G  GD+   +R   G++  +LAD+A
Sbjct: 361 GATVYVDYAHNYDSLKNLLTFVREEHPDGCLIVLVGSTGDKAISRRKDFGRVLSELADVA 420

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
           ++T D+P SEDP KI  EI   I          +R EAI  A+ +     D +V+AGKG 
Sbjct: 421 VLTTDDPASEDPAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGA 480

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           +    V   ++  + D  +    + 
Sbjct: 481 DLYQKVNGVDEPYAGDFALAEAFIN 505


>gi|255973740|ref|ZP_05424326.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
 gi|255966612|gb|EET97234.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
          Length = 480

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/482 (22%), Positives = 192/482 (39%), Gaps = 27/482 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R++  +S DSR + A  +F    G      +++  A+  G E  V    Y +       
Sbjct: 9   QREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEVPAQLG-- 64

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQI---CQRSG 141
                 ++V + +K +++ +   Y      +  +  TGT GK++ A F + I     +  
Sbjct: 65  ------IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQK 118

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +      ++        + LTTP  + L + ++   + G+TH  +E SS     +R+  
Sbjct: 119 TALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYK 178

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G F N+  DHI   +     F+       +L+      ++  +  Y   + + A 
Sbjct: 179 LFFDVGIFLNITPDHISPIE--HPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQ 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KDFDFLFPLPGEFQVYNALV 317
                 +  G Q                   I                  G        +
Sbjct: 237 QQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNAL 296

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +A +   +   S    +       VPGR E + TN+ G  +YVDYAH  +SL+ +L  +R
Sbjct: 297 SAAIASVLVGASKEECQQGIAATTVPGRMESL-TNTNGATVYVDYAHNYDSLKNLLTFVR 355

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IV+ G  GD+   +R   G++  +LAD+A++T D+P SEDP KI  EI   I
Sbjct: 356 EEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHI 415

Query: 437 PG---FIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                     +R EAI  A+ +     D +V+AGKG +    V   ++  + D  +    
Sbjct: 416 TKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAEAF 475

Query: 493 LG 494
           + 
Sbjct: 476 IN 477


>gi|296110395|ref|YP_003620776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295831926|gb|ADG39807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 491

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 121/511 (23%), Positives = 215/511 (42%), Gaps = 41/511 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL     +   +L+N   +   +    +  + +  D+R ++A  +FV + G       F
Sbjct: 1   MKLS---SETIQQLLNDEHLLVSKPEVTQTFDFLHYDTRQVKANTLFV-VKGA------F 50

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPE 115
            P+ + Q  G   +V             +  + P   V + +K LS+ +   +G  +H  
Sbjct: 51  RPEYLTQTDGVSGLVTE---------TRLDVSLPQWQVTDVQKALSILSMAFFGYPQHDL 101

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSS-----FQIGPTSTISSFAQDNRLTTPSPIYL 170
            I A TGT GK++ A     I + +              T   S   + + LTTP    L
Sbjct: 102 WIGAFTGTKGKTTAAYMAYNILKNTTDKHVALFSTVDRITGNNSEDKKKSDLTTPESYEL 161

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFN 228
            K +      G+TH+ +E SS    + R+ G++   G+F N+  DH   + H T + Y  
Sbjct: 162 FKDMRRSVDNGMTHLVMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIGPNEHPTFEDYLA 221

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K+ LF+        A             K+ H+        G  G + +  +  AIH  
Sbjct: 222 HKLMLFDHSDQVIINAESDHLSEIMTH-AKQTHDLVYTYSLAGKGGAYTYTSQESAIHES 280

Query: 289 QQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   +  + K     +   LPG+F   NA+ A  +    G     ++  L+++ + PGR 
Sbjct: 281 RLTVLPSDLKALAGHYRLNLPGDFNESNAMAALIMSALAGASHDNMIRGLDEVFI-PGRM 339

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
             +  +  G   +VDYAH   S+  +          GR++VV G  G++   +R   G++
Sbjct: 340 LSLPISGHGV-TFVDYAHNYASMHALLRFAQNQYPEGRVLVVVGSPGNKGVSRRADFGRV 398

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDV 461
             +LAD+  +T D+P+ E P  I  EI   I         + NRI+AI  AI    ++D+
Sbjct: 399 VSELADVVYLTADDPQFESPMVIAKEIASHITSETLEVHFEMNRIQAINQAISQATEKDI 458

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++VAGKG +    +   ++    D  ++++ 
Sbjct: 459 VIVAGKGEDPYQKINGVDEPYIGDYAVVKQY 489


>gi|312114849|ref|YP_004012445.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219978|gb|ADP71346.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 455

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 198/444 (44%), Positives = 270/444 (60%), Gaps = 8/444 (1%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           +F A+ G K DG           A     + A    + +     + PIL     R+ L+L
Sbjct: 2   LFAALSGTKADG------MAYAKAAEAAGAVAVLAGETANAEGLSLPILRAAEPRRALAL 55

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLT 163
            A+R Y   P+ I AVTGT+GK+SVA+F++QI   +G  +  +G    I ++  +    T
Sbjct: 56  LAARFYRAQPDIIAAVTGTNGKTSVAAFLRQIWATAGHDAASLGTIGIITNAGERPLSHT 115

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           TP P+ L KAL+ L+++GVTH+++EASSHGLDQHRLDG++  AG+FTN+ RDH+DYH T 
Sbjct: 116 TPDPVALHKALADLANEGVTHLALEASSHGLDQHRLDGVRFSAGAFTNITRDHLDYHPTF 175

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + YFNAKMRLF +LLP  +PAII AD  ++ +V+  A      V++VG +G  + LK V 
Sbjct: 176 EDYFNAKMRLFRDLLPSGAPAIIDADGDHADDVVGTARAKKLDVMTVGERGAALCLKGVE 235

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               +Q+++I   G+ F  L PL G FQV NALV+AGL + +G  +  V E LE L    
Sbjct: 236 RDGFRQRLSIIYRGRLFTVLLPLAGAFQVSNALVSAGLALGLGSSAGGVFEALETLRGAK 295

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR ++VG  S G  I+VDYAHT ++L   L+ +R   +GR+ VV GCGGDRD+GKRP MG
Sbjct: 296 GRLDYVGETSAGAPIFVDYAHTPDALVKALEALRPYVTGRLHVVLGCGGDRDRGKRPEMG 355

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + A   ADI  VTDDNPRSE+P  IRA I+   PG  E   R +AI  AI  L + D+L+
Sbjct: 356 RAATANADIVYVTDDNPRSEEPAAIRAAIMAAAPGATEIDGRADAIAIAIGNLERGDLLL 415

Query: 464 VAGKGHETVHIVTNGEKKMSVDCD 487
           VAGKGHET  IV         D +
Sbjct: 416 VAGKGHETGQIVGTKVIPY-SDHE 438


>gi|227495120|ref|ZP_03925436.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831572|gb|EEH63955.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 486

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 104/505 (20%), Positives = 188/505 (37%), Gaps = 29/505 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L   +            +       +   +VS +S+ +  G +FV   G K +   ++
Sbjct: 1   MDLS--LNVTQVRAALATELIADTLTNQVFTQVSYNSKKVIPGALFVC-KGAKFN-VAYL 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI  GA A +   AY +             + V + R  +   A+  Y          
Sbjct: 57  EEAIENGALAYISEVAYPVAA---------AWIQVKDIRVAIPKLANAFYTTPFAAFQLT 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKA 173
             T  K    + +          +     +              +++ LTTP P+ L + 
Sbjct: 108 GITGTKGKSTTTIFLQRILDTYLANTGKTSGIISSINTYDGIVNEESSLTTPEPLELFEH 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   +  V++E SS GL  HR+ G+    G F N+ +DHI   +        + +L
Sbjct: 168 FHNARQSALPFVTMEVSSQGLKYHRVGGVLFDVGVFLNIDKDHISAIEHPDFEDYFQSKL 227

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 K     + +     + +     +     +S            +       +  +
Sbjct: 228 MLFKQVKHLVINLDSA-EIDRVLAAIPAHVTVTTISASNPAADFCATNISTDGYSIKFQV 286

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S E  D      + G F V NAL A  +    GI    + E L ++ V PGR E     +
Sbjct: 287 SGEEIDL----GISGLFNVENALAAIAVARHYGIPFTAIKEALSEIRV-PGRMELFIGEN 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                 VDYAH   S E + ++      G + I++FGC G +   +R  + +++ + AD 
Sbjct: 342 PNLVTIVDYAHNRLSYERLFQSCEESFPGFKKIIIFGCPGHKALNRRVDLAEVSDEYADH 401

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
            I+T ++P +E   +I A+I   +         +R+E+   A+ ++  + V++  GKG E
Sbjct: 402 IILTMEDPNAEPVSEISADIAKNVKHTPVSIVDDRVESFAYALSLVEGKTVILFVGKGDE 461

Query: 471 TVHIVTNGEKKMSVDCDIIREILGL 495
           T H +         D +I+R  L L
Sbjct: 462 TTHKIHGKAVPYPSDVEIVRGALNL 486


>gi|299783726|gb|ADJ41724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 518

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 114/503 (22%), Positives = 195/503 (38%), Gaps = 37/503 (7%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L +    +R+     V  +S+ +Q+  +F    G       ++ +AI +GA A V   
Sbjct: 23  HGLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQ 80

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
           +Y  +  +         L+V N ++ ++L ++  YG    +   + +TGT GK+S A F 
Sbjct: 81  SYQNEATA---------LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFA 131

Query: 134 QQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                        +     TS        ++LTTP  + L + L      G+TH+ +E S
Sbjct: 132 ATALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVS 191

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S      R+  +    G F N+  DH+  ++          +    L           D 
Sbjct: 192 SQSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDH 251

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                   +   A  ++   G  G    L     I +      + +              
Sbjct: 252 FEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLD 311

Query: 311 QVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             Y + VA          A +C AIG      ++       + GR E + T   G  +YV
Sbjct: 312 GEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGT-VYV 370

Query: 361 DYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415
           DYAH   S++ +L  ++         +I VV G  G++   +RP +GK  A +  +  I+
Sbjct: 371 DYAHDYASVKRLLAFLKGQQYQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVIL 430

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T D+P  EDP+ I AEI   I            +R EAI TAI+     D++V+AGKG +
Sbjct: 431 TTDDPAFEDPQAIAAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKGTD 490

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
               V   +     D  + R+++
Sbjct: 491 QYQKVAGVDTPYPGDIAVARQVI 513


>gi|322377016|ref|ZP_08051509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
 gi|321282823|gb|EFX59830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
          Length = 481

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 123/497 (24%), Positives = 205/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   +     + +  DSR  +   +F  + G       F+  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFK-KEFLIS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI+QG    V    Y +           P ++V + +K +SL A   YG   E +  LA 
Sbjct: 66  AISQGLGWYVAEEDYEV---------GIPAIIVSDIKKAMSLVAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS      R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K S A+I   D     V+K                    ++   A     +  ++ +   
Sbjct: 234 KNSRAVIINSDMDHFSVLKEQVADQDHDFYGSQSDN--QIENSKAFSFSARGKLAGDYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           +DYAH  +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D
Sbjct: 345 IDYAHNGDSLKKLINVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I   +E   +R EAI+ A+ + N + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIVQ 464

Query: 477 NGEKKMSVDCDIIREIL 493
             ++    D  +    L
Sbjct: 465 GKKEAYPGDAAVAENYL 481


>gi|116627264|ref|YP_819883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMD-9]
 gi|122268133|sp|Q03M85|MURE_STRTD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116100541|gb|ABJ65687.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus thermophilus
           LMD-9]
 gi|312277751|gb|ADQ62408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus thermophilus ND03]
          Length = 481

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 119/497 (23%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F ++INQ   +   W     + +S DSR I    +F A  G       F+  
Sbjct: 9   EVLKKDHNFRDIINQ-EYYYYSWTGVTFDHLSYDSRDITPSTLFFA-KGAGFK-LEFLES 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    V    Y +           P ++V + ++ +SL A   Y    + +  LA 
Sbjct: 66  AVQAGLGFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFYQHPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ + F   I ++S   +      T+        + LTTP  + L + ++   S
Sbjct: 117 TGTKGKTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSNLTTPESLDLFRMMAEAVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI   +     F         LL 
Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+ +   +   V +   +          +    H          +          
Sbjct: 235 NSQAVIVNSGMNHFDFVAEEVADKDHDFYGKDSENTVKHSSGFSFKAKGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   L G+F   NA+ A   C+ +G     + + + +   VPGR E +   + G +++
Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEILTQAN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     +I  I++ D
Sbjct: 345 VDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYPEINVILSTD 404

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+TA+       D LV+AGKG +   IV 
Sbjct: 405 DPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGKGADAFQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
                 + D ++ ++ L
Sbjct: 465 GKRTDYAGDIEVAKKYL 481


>gi|184156310|ref|YP_001844650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227654|dbj|BAG28170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- lysine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 518

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 114/502 (22%), Positives = 194/502 (38%), Gaps = 37/502 (7%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L +    +R+     V  +S+ +Q+  +F    G       ++ +AI +GA A V   
Sbjct: 23  HGLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQ 80

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
           +Y         ++    L+V N ++ ++L ++  YG    +   + +TGT GK+S A F 
Sbjct: 81  SY---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFA 131

Query: 134 QQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                        +     TS        ++LTTP  + L + L      G+TH+ +E S
Sbjct: 132 ATALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVS 191

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S      R+  +    G F N+  DH+  ++          +    L           D 
Sbjct: 192 SQSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDH 251

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                   +   A  ++   G  G    L     I +      + +              
Sbjct: 252 FEEVYQAAKVSTAPDKIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLD 311

Query: 311 QVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             Y + VA          A +C AIG      ++       + GR E + T   G  +YV
Sbjct: 312 GEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGT-VYV 370

Query: 361 DYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415
           DYAH   S++ +L  ++         +I VV G  G++   +RP +GK  A +  +  I+
Sbjct: 371 DYAHDYASVKRLLAFLKDQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVIL 430

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T D+P  EDP+ I AEI   I            +R EAI TAI+     D++V+AGKG +
Sbjct: 431 TTDDPAFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKGTD 490

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V   +     D  + R++
Sbjct: 491 QYQKVAGVDTPYPGDIAVARQV 512


>gi|55820442|ref|YP_138884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMG 18311]
 gi|55822326|ref|YP_140767.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus CNRZ1066]
 gi|81559795|sp|Q5M1B4|MURE_STRT1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81560965|sp|Q5M5V0|MURE_STRT2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|55736427|gb|AAV60069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus LMG 18311]
 gi|55738311|gb|AAV61952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus CNRZ1066]
          Length = 481

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 119/497 (23%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F ++INQ   +   W     + +S DSR I    +F A  G       F+  
Sbjct: 9   EVLKKDHNFRDIINQ-EHYHYSWTGVTFDHLSYDSRDITPSTLFFA-KGAGFK-LEFLES 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    V    Y +           P ++V + ++ +SL A   Y    + +  LA 
Sbjct: 66  AVQAGLGFYVAEKDYQV---------GIPAILVSDIKQAMSLVAQAFYQHPQDKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ + F   I ++S   +      T+        + LTTP  + L + ++   S
Sbjct: 117 TGTKGKTTASYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSNLTTPESLDLFRMMAEAVS 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ G+    G F N+  DHI   +     F         LL 
Sbjct: 177 NGMTHLIMEVSSQAYLTKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYHKRLLLK 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+ +   +   V +   +          +    H          +          
Sbjct: 235 NSQAVIVNSGMNHFDFVAEEVADKDHDFYGKDSENTVKHSSGFSFKAKGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D+   L G+F   NA+ A   C+ +G     + + + +   VPGR E +   + G +++
Sbjct: 287 GDYDIQLIGDFNQDNAMAAGLACLRLGASLEDIKKGIAQ-TSVPGRMEILTQAN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH  +SL+ +L+ +     G+I ++ G  G++ + +R   G +     +I  I++ D
Sbjct: 345 VDYAHNGDSLDKLLQVVTDHQKGKISLILGAPGNKGESRRQDFGHVLNTYPEINVILSTD 404

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I        +R EAI+TA+       D LV+AGKG +   IV 
Sbjct: 405 DPNKEDPLTICQEIASHINRKVRIIIDREEAIKTAMSETTGSSDALVIAGKGADAFQIVN 464

Query: 477 NGEKKMSVDCDIIREIL 493
                 + D ++ ++ L
Sbjct: 465 GKRTDYAGDIEVAKKYL 481


>gi|170017365|ref|YP_001728284.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
 gi|169804222|gb|ACA82840.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
          Length = 516

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 109/506 (21%), Positives = 195/506 (38%), Gaps = 33/506 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL     K   +L++  ++   Q     + + +  D+R ++   +FV + G       +
Sbjct: 17  MKLT---SKTIEQLLSSHNLLVSQPVTYHEFSFLHYDTRQVEPETLFV-VKGAFR--PKY 70

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118
           +  A  QG   IV  S          +  + P   V N +K LSL +   +    +N+  
Sbjct: 71  LENA--QGITGIVSES---------QLPVDLPQWQVTNVQKALSLLSMAFFDYPQKNLWI 119

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAK 172
            A TGT GK++ A     I + +  +           T   +S  + + LTTP    L K
Sbjct: 120 GAFTGTKGKTTAAYMTYNILKAATDNHTALFSTVDRITGPKASDRKKSDLTTPESYELFK 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAK 230
            +  +   G+TH+ +E SS    + R+ G++   G+F N+  DH   + H   + Y   K
Sbjct: 180 DMRRVVDNGMTHLIMEVSSQAYLKQRVYGLRYQVGAFLNISPDHIGPNEHPNFEDYLAHK 239

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + LF+        A             K          +          +      ++  
Sbjct: 240 LMLFDHSDKVIVNAESDHLSEIMTHAKKGHDKIYTYSNAEKGGEYTFTSQSSAIHESQLT 299

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V  S   +               +  +AA +  A+       +        +PGR   + 
Sbjct: 300 VQASDLSEMAGAYRLNLPGDFNESNALAALIMAALAGAKHEAMVKGLDTVFIPGRMLSLP 359

Query: 351 TNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             + G   +VDYAH   S+  +          G++IVV G  G++   +R   G++  +L
Sbjct: 360 IPNHGV-AFVDYAHNYASMHALLKFAQSQYPDGKVIVVVGSPGNKGVSRRADFGRVVSEL 418

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD+  +T D+P+ E P+ I  EI   I         + +RI AI  A+      D+++VA
Sbjct: 419 ADVVYLTADDPQFESPKTIADEIAAHINNPKLDVHFEMDRIAAINQALLAARDNDIVIVA 478

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE 491
           GKG +    V   ++    D  +++ 
Sbjct: 479 GKGEDPYQKVNGVDEPYIGDYAVVKN 504


>gi|145630233|ref|ZP_01786015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984514|gb|EDJ91937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 358

 Score =  221 bits (562), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/361 (31%), Positives = 175/361 (48%), Gaps = 11/361 (3%)

Query: 140 SGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  +G           + + TT S + +  +LS     G    S+E SSHGL QHR
Sbjct: 1   MGHRAAVMGTIGNGLLGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHR 60

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD    + + 
Sbjct: 61  VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDEIGYQWLT 118

Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              +A    ++  ++    +++    +        +T      +     PL G F V N 
Sbjct: 119 ELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNL 178

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++LE  L  
Sbjct: 179 LLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPI-VIVDYAHTPDALEKALIA 237

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I A+I+ G
Sbjct: 238 AREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAG 297

Query: 436 IPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                      +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D +I  + 
Sbjct: 298 FKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSDQEIALDF 356

Query: 493 L 493
           L
Sbjct: 357 L 357


>gi|260662527|ref|ZP_05863422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
 gi|260553218|gb|EEX26161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
          Length = 516

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 113/502 (22%), Positives = 193/502 (38%), Gaps = 37/502 (7%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           + L +    +R+     V  +S+ +Q+  +F    G       ++ +AI +GA A V   
Sbjct: 21  HGLLVRTENYRQHFFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQ 78

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFV 133
           +Y         ++    L+V N ++ ++L ++  YG    +   + +TGT GK+S A F 
Sbjct: 79  SY---------QNGATALIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFA 129

Query: 134 QQICQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                        +     TS        ++LTTP  + L + L      G+TH+ +E S
Sbjct: 130 ATALNLGTDDRTALISTLNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEVS 189

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S      R+  +    G F N+  DH+  ++          +    L           D 
Sbjct: 190 SQSYLLDRVYSLHFGIGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDH 249

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                   +   A  ++   G       L     I +      + +              
Sbjct: 250 FEEVYQAAKVSTAPDKIYLFGEASSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLD 309

Query: 311 QVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             Y + VA          A +C AIG      ++       + GR E + T   G  +YV
Sbjct: 310 GEYQSSVAGDYNVGNATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGT-VYV 368

Query: 361 DYAHTSNSLEMILKNIRTITSG----RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIV 415
           DYAH   S++ +L  ++         +I VV G  G++   +RP +GK  A +  +  I+
Sbjct: 369 DYAHDYASVKRLLAFLKGQQHQGEPSQITVVLGAPGNKGVSRRPDLGKALAEERVNRVIL 428

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           T D+P  EDP+ I AEI   I            +R EAI TAI+     D++V+AGKG +
Sbjct: 429 TTDDPAFEDPQAIAAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKGTD 488

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V   +     D  + R++
Sbjct: 489 QYQKVAGVDTPYPGDIAVARQV 510


>gi|145635584|ref|ZP_01791282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267146|gb|EDK07152.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 358

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/361 (31%), Positives = 175/361 (48%), Gaps = 11/361 (3%)

Query: 140 SGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            G  +  +G           + + TT S + +  +LS     G    S+E SSHGL QHR
Sbjct: 1   MGHRAAVMGTIGNGLFGQIVEAKNTTGSAVEIQSSLSTFKHAGADFTSIEVSSHGLAQHR 60

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           ++ +   A  FTNL RDH+DYHQ+ + Y  AK RLF EL  +       ADD    + + 
Sbjct: 61  VEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVIN--ADDEIGYQWLT 118

Query: 259 RAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
              +A    ++  ++    +++    +        +T      +     PL G F V N 
Sbjct: 119 ELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSPLIGAFNVSNL 178

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+     ++ G     +L   + L  V GR E +   ++   + VDYAHT ++LE  L  
Sbjct: 179 LLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNKPT-VIVDYAHTPDALEKALIA 237

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            R    G +  +FGCGGDRD+GKRP+M ++A   A+  IVT DNPR+E   +I A+I+ G
Sbjct: 238 AREHCQGELWCIFGCGGDRDRGKRPLMAQVAEQFAETIIVTKDNPRTEPQSQIEADIVAG 297

Query: 436 IPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
                      +R +AI+ AIE   + DV+++AGKGHE   I+ + E     D +I  + 
Sbjct: 298 FKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKGHEHYQIIGS-EVVHFSDQEIALDF 356

Query: 493 L 493
           L
Sbjct: 357 L 357


>gi|52142904|ref|YP_083926.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976373|gb|AAU17923.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 357

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 107/358 (29%), Positives = 163/358 (45%), Gaps = 15/358 (4%)

Query: 147 IGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G     + S      + T  P  L + L  + ++   +  +E +S GL   R+ G    
Sbjct: 1   MGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYCVMEVTSQGLHMERVKGCNFK 60

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRA 260
              FTNL +DH+DYH T   Y + K  LF          ++  A++ ADD   +   K  
Sbjct: 61  IAVFTNLTQDHLDYHGTFLEYKHVKGLLFARLGNDLSTTEKKIAVLNADDPSVEYFKKIT 120

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              K +       +  +S    + +    L G F +YNAL A  
Sbjct: 121 SAEVITYGIHNRADV--QAKNINLSPKGIRFLVSSFNGEIEVSLNLVGRFNIYNALAAIT 178

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + I  GI    + + L  L  + GR E +   ++   + VDYAHT ++LE +L  I   +
Sbjct: 179 VAIVEGIPLTNICDSLSNLKSIEGRMEII-DENQDFFVIVDYAHTPDALENVLSTISEFS 237

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
            G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP+ I  +I  G     
Sbjct: 238 KGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNN 297

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              +  + +R  AI  AI M +  D++++AGKGHET  I+ +       D +  R+ +
Sbjct: 298 NLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKDST-IHFDDKEKARQAI 354


>gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
 gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
          Length = 495

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 137/499 (27%), Positives = 228/499 (45%), Gaps = 28/499 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +L+ +     +   +  P    + +I  +S  S  +  G +FVAI G   DG  +I
Sbjct: 3   MKVYELLEQSG---VTARNPLPADVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             AI +GA  IV  S         T R N P + VDN R+ LSL  S  Y    ++   +
Sbjct: 60  GNAIERGASLIVTESDL-------TARENVPFIQVDNARERLSLLVSAFYHNPSQDKLVI 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYL 177
            +TGT+GK++ A F+Q + +++G      G   + I+    +++LTTPS   +    + L
Sbjct: 113 GITGTNGKTTTALFLQHLLKKAGFEVAYFGTVYNEITCQRYESKLTTPSATEIQ---ASL 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +      V +E SS GL Q+R+ G++     FTNL  DH+DY++T +AY+ AK  LF  +
Sbjct: 170 AWSNDDVVVIETSSQGLHQYRMAGMQFDYALFTNLQHDHLDYYKTMEAYYQAKKSLFSLM 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  A+I +   +   + K     G +VL+V  +                       G
Sbjct: 230 -KADGKAVINSYTMWGNRLAKELAANGKQVLTVDTKKGATSYVLDKTTDTAVVAFNGQGG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +   PL G +   N ++A  + + +G+D+    E +     + GR E+      G  
Sbjct: 289 QIEEIEAPLSGVYNQENLILATTVMVDLGLDAGNTNEAIADFAGIAGRLEYYPLA-DGNE 347

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDYAHT +++E +L  +     +  II +FG  G RD  K P M   +   AD+ I+T
Sbjct: 348 MVVDYAHTPDAIEALLTTLNAQYPNHEIIHIFGFRGQRDTKKFPQMVSASQTGADLTILT 407

Query: 417 DDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            D+      + +  + +      G+       +R+EA+  A+EM      LV+ GKGHE 
Sbjct: 408 TDDLNGVPKQVMAEKYLEYVTQYGLDSMAMALDRVEAVELALEMSPNPVFLVLTGKGHEA 467

Query: 472 VHIVTN-GEKKMSVDCDII 489
              V   G +    D  + 
Sbjct: 468 YSEVNKYGVQ---SDQQVA 483


>gi|227510559|ref|ZP_03940608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190211|gb|EEI70278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 514

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 111/520 (21%), Positives = 194/520 (37%), Gaps = 41/520 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQW---RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           KL  +   +   L+ +  +         ++    V+ +S+ +    +F    GN      
Sbjct: 3   KLAQITVDEVLMLLKEHDLLVKSQFSRLDQSFQSVAYNSKVVSDNCLFFC-KGNFR--EA 59

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-- 116
           ++  A  +GA   V    Y             P ++V N +K +SL ++  +G    N  
Sbjct: 60  YLADAQQRGASGYVSEKQY--------HNVTIPGIIVKNIQKSMSLLSAAFFGFPQNNLP 111

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            +A TGT GK++ A F + I  +         S         S     + LTTP  + L 
Sbjct: 112 TIAYTGTKGKTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLF 171

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             ++      +TH+ +E SS    + R+  +    G F N+  DHI  ++          
Sbjct: 172 TNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLHYNVGVFLNISPDHIGRNEHPTFADYLHC 231

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +    +  K+      +D         +A +    +     +G  ++ +       +   
Sbjct: 232 KEQLLVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLA 291

Query: 292 TISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               E K                                V+A +  A+       +E+  
Sbjct: 292 DSLSENKIQLISVSDKAKRLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGL 351

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
               VPGR E   T   G  IYVDYAH   SL  +L  ++     G +IV+ G  GD+  
Sbjct: 352 SHTTVPGRMEIYSTKQHGT-IYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGI 410

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTA 452
            +R  +GK   + A++A +T D+P +EDP+ I  EI   I           +R  AI+ A
Sbjct: 411 DRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKA 470

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    + D++VVAGKGH+    +       + D  I+  +
Sbjct: 471 VLESKQGDLVVVAGKGHDAFQKINGKNVPYAGDATIVANL 510


>gi|58697149|ref|ZP_00372575.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536545|gb|EAL59906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
          Length = 423

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 158/449 (35%), Positives = 241/449 (53%), Gaps = 33/449 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L++                  + +I  V+ + + I+ G++FV +  ++ D  ++I
Sbjct: 1   MKLRELLHNII-----------DVNFDIEIKGVTCNPKKIKEGYLFVCV--SERD-RIYI 46

Query: 61  PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117
            Q ++ GA+AI+ S     +L       R     +   N ++  S   SR Y  K P+ +
Sbjct: 47  DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKAL 174
            AVTGT+GK+SV  F +QI Q SG ++  IG   T          N LTTP    L    
Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDL---Y 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L    V H+ +E+SSHG+DQ+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF
Sbjct: 164 ATLRGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E+LP+   AI+ AD      ++K A     +V++ G +G  I L +  +  N Q +T+ 
Sbjct: 224 YEVLPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVK 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++ + ++  FP+ G+FQ YN L A G+      +       +EKL   PGR E V     
Sbjct: 284 IDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVKP--- 335

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ KR  MGKIA   AD  I
Sbjct: 336 --FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVI 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +TDDN R EDP KIR +I+   P  +E G
Sbjct: 394 ITDDNSRDEDPAKIRHDILLHCPDALEIG 422


>gi|148545136|ref|YP_001272506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184154468|ref|YP_001842809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227364299|ref|ZP_03848392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|325683498|ref|ZP_08163014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
 gi|167017294|sp|A5VMU5|MURE_LACRD RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148532170|gb|ABQ84169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           DSM 20016]
 gi|183225812|dbj|BAG26329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227070612|gb|EEI08942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|324977848|gb|EGC14799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 516

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 111/506 (21%), Positives = 192/506 (37%), Gaps = 49/506 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSL 79
               +     VS DSR +++G +F         G+    ++  A  +GA A V    Y  
Sbjct: 22  SNLTDFTATSVSYDSRKVKSGTLFFC------KGNFLPKYLASAKEKGAIAYVAEKEYPE 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                      P ++V++ +K +SL  +  YG    ++  +  T  K    +        
Sbjct: 76  -------GEGLPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFADHIL 128

Query: 140 SGLSSF-------QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  ++                      + LTTP  + L   +      G+TH+ +E SS 
Sbjct: 129 AQSTADHIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRVAVDNGMTHLVMEVSSQ 188

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              ++R+ G+K   G F N+  DHI  ++          +    +   +       +   
Sbjct: 189 AYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFT 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------- 298
                 +A      +     +G  I L     I  + +  +    +              
Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  +   +PG++   NA+ A       G  +   +E L  +H+  GR E + +N+ G
Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVHI-RGRMEMINSNTHG 367

Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIA 413
             IYVDYAH   SL+ +L  + R   +G++ VV G  GD+   +RP  GK    +  D  
Sbjct: 368 T-IYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKALTEEQPDEV 426

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I+T D+P  EDP  I  EI   I          + +R  AI+ AI+     D++V+AGKG
Sbjct: 427 ILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSENDDIVVLAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            +    V   +     D  I R+ + 
Sbjct: 487 EDPYQKVNGEDVPYPTDVKIARDYIN 512


>gi|194467395|ref|ZP_03073382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
 gi|194454431|gb|EDX43328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
          Length = 516

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 110/506 (21%), Positives = 192/506 (37%), Gaps = 49/506 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSL 79
               +     VS DSR +++G +F         G+    ++  A  +GA A V    Y  
Sbjct: 22  SNLTDFTATSVSYDSRKVKSGTLFFC------KGNFLPKYLASAKEKGAIAYVAEKEYPE 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                      P ++V++ +K +SL  +  YG    ++  +  T  K    +        
Sbjct: 76  -------GEGLPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFADHIL 128

Query: 140 SGLS-------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +       S               + LTTP  + L   +    + G+TH+ +E SS 
Sbjct: 129 AQSTDNHIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQ 188

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              ++R+ G+K   G F N+  DHI  ++          +    +   +       +   
Sbjct: 189 AYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFI 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------- 298
                 +A      +     +G  I L     I  + +  +    +              
Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIKLPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  +   +PG++   NA+ A       G  +   +E L  +H+  GR E + +N+ G
Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLSHVHI-RGRMEMINSNTHG 367

Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIA 413
             IYVDYAH   SL+ +L  + R   + ++ VV G  GD+   +RP  GK    +  D  
Sbjct: 368 T-IYVDYAHNYASLKRLLAFLKRQTNADKVTVVLGATGDKGISRRPGFGKALTEEQPDEV 426

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I+T D+P  EDP  I  EI   I          + +R  AI+ AI+     D++V+AGKG
Sbjct: 427 ILTTDDPGFEDPMTIAREIDSYIDHDKVKNIQFEMDRETAIKKAIDGSGNDDIVVLAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            +    +   +     D  I R+ + 
Sbjct: 487 EDPYQKINGEDVPYPTDVKIARDYIN 512


>gi|289640757|ref|ZP_06472928.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
           Datisca glomerata]
 gi|289509333|gb|EFD30261.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
           Datisca glomerata]
          Length = 571

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 142/415 (34%), Positives = 203/415 (48%), Gaps = 19/415 (4%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+LV  + R  L   A+R+YG       +L VTGT+GK++VA  ++   + +G ++  IG
Sbjct: 152 PVLVAADPRALLGPVAARVYGDPSAALTLLGVTGTNGKTTVAYLLEAGLRAAGHTTGLIG 211

Query: 149 PTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              T  +     +  TTP    L   L+ ++ +GVT  ++E SSH +  HR+ GI+    
Sbjct: 212 TVQTRLAGTVLPSVRTTPEATDLQALLAVMAERGVTAAAMEVSSHAVALHRVGGIRFAGA 271

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +FTNL +DH+D+H + + YF AK  LF       S       D  +    + A      +
Sbjct: 272 AFTNLSQDHLDFHPSMEDYFAAKAALFTPERTGVSVI-----DTDTPWGRQLAAAVPGAI 326

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                         V A               D      LPG F V NALVA  L +A G
Sbjct: 327 TCGTAADAHWRAVDVTAGPTGTTFRALGPHGVDVRVGIALPGAFNVGNALVALALLVATG 386

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + + +    L  L  VPGR E V          VDYAHT ++++ +L+ +R + SGR+IV
Sbjct: 387 VPAPVAAAGLASLPGVPGRMERVDAGQ-PFLGLVDYAHTPDAVQTLLRTVRPLVSGRVIV 445

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--------PG 438
           V GCGGDRD+ KRP+MG  A   AD+AI T DNPRSEDPE I A++  G+          
Sbjct: 446 VLGCGGDRDRRKRPLMGAAAAAGADLAIFTSDNPRSEDPELIIAQMCTGVGTLPPSARGR 505

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + + +R  AIR A+      D +V+AGKGHET      G      D D++R  L
Sbjct: 506 VMVEPDRAAAIRRAVGFARPGDAVVLAGKGHETGQE-QAGVVTPFDDRDVLRAEL 559



 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 16 NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
          + L++         +  ++ DSR ++ G ++ A+ G +  G  F+ Q
Sbjct: 20 DGLAVTGGAVAGVVVRGITHDSRAVRPGDLYAALPGARAHGAAFVRQ 66


>gi|257870823|ref|ZP_05650476.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
 gi|257804987|gb|EEV33809.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
          Length = 504

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/502 (20%), Positives = 184/502 (36%), Gaps = 29/502 (5%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+ +   +        P +  +     +S DSR   A  +F    G       ++  A+
Sbjct: 19  NLLKEFIGQ--EWHYTVPQEMNDLIFTSLSYDSRQTDANTLFFC-KGAAFK-ESYLESAV 74

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           AQG +  V    Y               ++V + R  ++  A   Y    + +  +  T 
Sbjct: 75  AQGLQCYVSEHPYENCSAYG--------IIVTDIRAAMACIAQAFYNNPQDQLFKIGITG 126

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSS 179
            K   +         +  ++ ++   S+          Q+  LTTP  + L   ++   +
Sbjct: 127 TKGKTSCAYFVREILAKTTNQKVAFFSSEENTVDGKNYQEAVLTTPETLDLYAMMAEAVA 186

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G+TH+ +E SS      R+ GI    G F N+  DHI   +             +  L 
Sbjct: 187 NGMTHLVMEVSSQAYKTKRVSGITYEIGIFLNISPDHIGPVEHPDFDDY---LFCKRELI 243

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  +I    +   E++K    A    L    Q    +        + +   I  E   
Sbjct: 244 HNSKQMIINRQSDYFELLKETCAAHQVPLITYGQCDGDYQVLPAESGDPKSFRIHSEKDI 303

Query: 300 FDFLFPL---PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                           ++   AA +   +   +    + +     +PGR   V     G 
Sbjct: 304 LLVNGDYQLALLGEFNHDNATAAIVAACLAGATQEEAQSVLPNVTIPGRM-IVLEKQNGA 362

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            I VDYAH   S + + +   T+   GR+I V G  G + + +RP MG+   + AD   +
Sbjct: 363 LIIVDYAHNYLSFKSLSELAHTLRPKGRLIFVTGSAGGKAESRRPDMGRALSEYADKVYL 422

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T D+P  EDP  I AEI   I           +R  A+++A+     QD++++AGKG E 
Sbjct: 423 TSDDPNFEDPRAIAAEIAAAITAPTVIIEEQMDRSLAVQSAVAEAASQDIVILAGKGAEQ 482

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              V   ++    D  I + +L
Sbjct: 483 YLKVNGQKEPYEGDLQIAQRLL 504


>gi|312196217|ref|YP_004016278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
 gi|311227553|gb|ADP80408.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
          Length = 522

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 158/502 (31%), Positives = 236/502 (47%), Gaps = 20/502 (3%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+       + + +   +   E  ++ V+ DSR +Q G ++ A+ G+   G  F   
Sbjct: 19  LRALLADLGS--VQRAAAADVAAPEVVLHGVTHDSRAVQPGDLYAALPGSHAHGADFAAA 76

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A A GA A++   A +    +     + P++   + R  ++  A  LYG+      +L V
Sbjct: 77  AAASGAAAVLTDPAGAA---ALAGSVDLPVVTTADPRSDVAQVADWLYGQPSRSLTLLGV 133

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT+GK++ A  V    + +G  +  +G   T  +    D+  TTP    L    + +  
Sbjct: 134 TGTNGKTTSAFLVDAGLRAAGHRTGLLGTVETRIADERVDSVRTTPESSDLQALFAVMVE 193

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVT  ++E SSH L QHR+DG++     FTNL +DH+DYH T + YF AK RLFE    
Sbjct: 194 RGVTAATMEVSSHALAQHRVDGLRFAGALFTNLSQDHLDYHPTMRDYFEAKARLFEPERT 253

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
             S   I          ++ A      V              +         T       
Sbjct: 254 AASVIGIEPG--AGTWGLELAARVPGSVTYAPDPPADWWADDLTVGARGSSFTARGPRGL 311

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  LPG F V NAL A  L +A GI+       +  L  VPGR E +    +    
Sbjct: 312 AVPMEVRLPGRFNVANALGALALLVAAGIEPRAAAAGIGTLAGVPGRMEPI-EAGQPYLA 370

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+AHT +++E +L ++R +  GR+IVV GCGGDRD+ KRP+MG  A  LAD+A +T+D
Sbjct: 371 LVDFAHTPDAVETVLTSVRGLVDGRVIVVLGCGGDRDRAKRPLMGAAAARLADLAFLTND 430

Query: 419 NPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           NPRSEDP +I A++  GI              +R EAI  A+      DV+VVAGKGHE 
Sbjct: 431 NPRSEDPAEILAQMTAGIDRVATSAAKVTVIPDRAEAIAAAVAEAGPGDVVVVAGKGHER 490

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
                NG      D  ++ + +
Sbjct: 491 GQE-QNGVVTPFDDRAVLAQAI 511


>gi|257785019|ref|YP_003180236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
 gi|257473526|gb|ACV51645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
          Length = 517

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/498 (19%), Positives = 175/498 (35%), Gaps = 19/498 (3%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L +L+       +    + F    +  ++ +V+SDSR +  G +FV   G       +
Sbjct: 1   MTLHELLALFTSKNIEYTTAHFDAVDQNAQLTDVASDSREVIPGSLFVC-KGASF-SPAY 58

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  A+  GA A +   + + +     +  N   + VD+ R  ++  A+ + G   + +  
Sbjct: 59  LTSAVKAGAVAYLCQRSLAEE--LQAVAPNVAAIHVDDVRFAMAYVAAGVAGHPDKKLTT 116

Query: 120 VTGTSGKSSVASFVQQICQRSGL-SSFQIGPTS----TISSFAQDNRLTTPSPIYLAKAL 174
           +  T  K              G     + G             Q    TTP    L + L
Sbjct: 117 IGITGTKGKSTCSYMLRAILDGDEPYSKCGVIGGIEVFDGKDTQPAHNTTPEAPELWRHL 176

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            + +  G+ +V +E SS GL   R   + L    F N+G DHI   +        + +L 
Sbjct: 177 KHAAEAGLPYVDMEISSQGLKYDRTVDLNLSVAVFLNIGTDHISPVEHPTFEDYFESKLK 236

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L + +         + + + +          S       +   ++         T+ 
Sbjct: 237 IFDLARVAVVNKNTMM-FDQVMERAQRCEKVLTFSTTDSDATVWADEITPHQGMVTFTVH 295

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     P+ G F V NAL A  +   +GI     +  L  + V PGR E + +   
Sbjct: 296 TPTWTSSAALPMSGLFNVENALAAITVADYLGIREKDAVLPLMNVKV-PGRMELLSSPDN 354

Query: 355 GGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                VDYAH   S +       +        VV G  G +   +R  + + A   AD+ 
Sbjct: 355 KVTGLVDYAHNKLSYQKLFSSTAKEFPGYGRYVVMGAVGGKAYNRRQELPEEAAKWADLM 414

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQ---DVLVVAGK 467
           I T ++   EDP  I A++    P         +R +AI  A+          ++ +  K
Sbjct: 415 IYTTEDCNMEDPAVICAQMAEATPEGAAHKIILDRYDAIYEAVSAAYDDPRPSLVYLLAK 474

Query: 468 GHETVHIVTNGEKKMSVD 485
           G E  +I+         D
Sbjct: 475 GDEPFNIIGGKHVPWMTD 492


>gi|229550849|ref|ZP_04439574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|258538439|ref|YP_003172938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|229315799|gb|EEN81772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150115|emb|CAR89087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 517

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/499 (22%), Positives = 199/499 (39%), Gaps = 47/499 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQDFS 83
            +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   +  
Sbjct: 27  EDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEGN-- 80

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                    L+V N  K +++ ++  +    ++  ++A TGT GK++ A F + I   + 
Sbjct: 81  -----GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEAR 135

Query: 142 LSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                +  T              + LTTP  + L + +      G+TH+ +E SS    +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLR 195

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R+ G+    G F N+  DHI     +   F   +    +LL      +I A+  +  +V
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQV 253

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----------------- 299
              A           +       K+     + +  +   +  +                 
Sbjct: 254 YAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNI 313

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              +   L G+F   NA  A       G+D++  +  + K+ + PGR E       G  +
Sbjct: 314 GGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHFQVPGHGT-V 371

Query: 359 YVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           YVDYAH   S++ +L  + R+    R++VV G  GD+   +RP   K+  +LA  A +T 
Sbjct: 372 YVDYAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFLTT 431

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P  EDP  I  EI   I        +  +R EAI  AI+    +DV+VVAGKG +   
Sbjct: 432 DDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADPYQ 491

Query: 474 IVTNGEKKMSVDCDIIREI 492
            +         D  +++E+
Sbjct: 492 KIRGVNTPWPTDMAVVKEV 510


>gi|199597925|ref|ZP_03211350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|258507252|ref|YP_003170003.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
 gi|199591182|gb|EDY99263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|257147179|emb|CAR86152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus GG]
 gi|259648618|dbj|BAI40780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
          Length = 517

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 113/499 (22%), Positives = 199/499 (39%), Gaps = 47/499 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQDFS 83
            +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   +  
Sbjct: 27  EDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEGN-- 80

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
                    L+V N  K +++ ++  +    ++  ++A TGT GK++ A F + I   + 
Sbjct: 81  -----GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEAR 135

Query: 142 LSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                +  T              + LTTP  + L + +      G+TH+ +E SS    +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQAYLR 195

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +R+ G+    G F N+  DHI     +   F   +    +LL      +I A+  +  +V
Sbjct: 196 NRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQV 253

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----------------- 299
              A           +       K+     + +  +   +  +                 
Sbjct: 254 YAAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNI 313

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              +   L G+F   NA  A       G+D++  +  + K+ + PGR E       G  +
Sbjct: 314 GGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHFQVPGHGT-V 371

Query: 359 YVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           YVDYAH   S++ +L  + R+    R++VV G  GD+   +RP   K+  +LA  A +T 
Sbjct: 372 YVDYAHNYASMKALLSFLKRSYKDPRLLVVVGSPGDKGVSRRPGFAKVLTELATEAFLTT 431

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           D+P  EDP  I  EI   I        +  +R EAI  AI+    +DV+VVAGKG +   
Sbjct: 432 DDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKGADPYQ 491

Query: 474 IVTNGEKKMSVDCDIIREI 492
            +         D  +++E+
Sbjct: 492 KIRGVNTPWPTDMAVVKEV 510


>gi|116493794|ref|YP_805528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei ATCC 334]
 gi|122264751|sp|Q03CI6|MURE_LACC3 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116103944|gb|ABJ69086.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei ATCC
           334]
          Length = 517

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 108/502 (21%), Positives = 195/502 (38%), Gaps = 47/502 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    ++  ++A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +      +  T              + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++R+ G+    G F N+  DHI     +   F   +    +LL      +I A+  + 
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299
            +V   A           +       K+     + +  +   +  +              
Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310

Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 +   L G+F   NA  A       G+D++  +  + K+ + PGR E       G
Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A 
Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T D+P  EDP  I  EI   I        +  +R +AI  AI      D++VVAGKG +
Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRKKAIAEAISDSGPNDIVVVAGKGAD 488

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V         D  +++++
Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510


>gi|325690643|gb|EGD32644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK115]
          Length = 481

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 115/497 (23%), Positives = 208/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I   D    +++K    +            +          ++     +     
Sbjct: 234 DHSRAVIVNSDMDHFQIVKEQVAS-------MEHDFYGAGSSNTITDSQAFSFEAAGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 287 GHYDIQLIGRFNQENAIAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPIAIAEEIASYISYPVEKIADREEAIKKALSLTDQEGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVAYPGDYALAEKYL 481


>gi|227543711|ref|ZP_03973760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300908776|ref|ZP_07126239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
 gi|227186279|gb|EEI66350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894183|gb|EFK87541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
          Length = 516

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/506 (21%), Positives = 192/506 (37%), Gaps = 49/506 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSL 79
               +     VS DSR +++G +F         G+    ++  A  +GA A V    Y  
Sbjct: 22  SNLTDFTATSVSYDSRKVKSGTLFFC------KGNFLPKYLASAKEKGAIAYVAEKEYPE 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                      P ++V++ +K +SL  +  Y     ++  +  T  K    +        
Sbjct: 76  -------GEGLPAIIVNDEQKAMSLLGAAFYDYPQNDLFIIAITGTKGKTTTAYFADHIL 128

Query: 140 SGLSSF-------QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  ++                      + LTTP  + L   +    + G+TH+ +E SS 
Sbjct: 129 AQSTANHIALFSTLDRILGNKPEDEFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQ 188

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              ++R+ G+K   G F N+  DHI  ++          +    +   +       +   
Sbjct: 189 AYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFT 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------------- 298
                 +A      +     +G  I L     I  + +  +    +              
Sbjct: 249 DVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQ 308

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D  +   +PG++   NA+ A       G  +   +E L  +H+  GR E + +N+ G
Sbjct: 309 LNLDGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVHI-RGRMEMINSNTHG 367

Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIA 413
             IYVDYAH   SL+ +L  + R   +G++ VV G  GD+   +RP  GK    +  D  
Sbjct: 368 T-IYVDYAHNYASLKRLLAFLKRQTNAGKVTVVLGATGDKGISRRPGFGKALTEEQPDEV 426

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I+T D+P  EDP  I  EI   I          + +R  AI+ AI+     D++V+AGKG
Sbjct: 427 ILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSGNDDIVVLAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            +    +   +     D  I R+ + 
Sbjct: 487 EDPYQKINGEDVPYLTDVKIARDYIN 512


>gi|239631049|ref|ZP_04674080.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527332|gb|EEQ66333.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 517

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 108/502 (21%), Positives = 195/502 (38%), Gaps = 47/502 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    ++  ++A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +      +  T              + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++R+ G+    G F N+  DHI     +   F   +    +LL      +I A+  + 
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299
            +V   A           +       K+     + +  +   +  +              
Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310

Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 +   L G+F   NA  A       G+D++  +  + K+ + PGR E       G
Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A 
Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T D+P  EDP  I  EI   I        +  +R +AI  AI      D++VVAGKG +
Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKGAD 488

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V         D  +++++
Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510


>gi|191637036|ref|YP_001986202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei BL23]
 gi|190711338|emb|CAQ65344.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus casei BL23]
 gi|327381063|gb|AEA52539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei LC2W]
 gi|327384238|gb|AEA55712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei BD-II]
          Length = 517

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 109/502 (21%), Positives = 196/502 (39%), Gaps = 47/502 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    ++  ++A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +      +  T        S     + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPESDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++R+ G+    G F N+  DHI     +   F   +    +LL      +I A+  + 
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299
            +V   A           +       K+     + +  +   +  +              
Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310

Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 +   L G+F   NA  A       G+D++  +  + K+ + PGR E       G
Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A 
Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T D+P  EDP  I  EI   I        +  +R +AI  AI      D++VVAGKG +
Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKGAD 488

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V         D  +++++
Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510


>gi|154496371|ref|ZP_02035067.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
 gi|150274454|gb|EDN01531.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 117/501 (23%), Positives = 195/501 (38%), Gaps = 28/501 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ K+   L++  +        R++  VS DS+ +  G +F+   G       ++  A  
Sbjct: 17  LLLKNG--LLSDSAPLHADLT-REVRLVSCDSQTVVPGTLFIC-KGAAFKP-QYLLDAAE 71

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA   V    +             P ++V + R+ ++L A R +      +     T  
Sbjct: 72  KGAFVYVSERRWPECAL--------PCILVSDIRRSMALLADRAWNHPSGRLHITGITGT 123

Query: 126 KSSVASFVQQICQRSGLS--------SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           K    +                    +      +      +  +LTTP P+ L + L   
Sbjct: 124 KGKTTTAYFLKSMLDEWRRSQGKRESAILSTMITDDGVERRPAKLTTPEPLDLQRHLWNA 183

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  G  ++++E SS  L  HR  G++   G F N+G DHI   +    + +         
Sbjct: 184 AECGAEYLTMEVSSQALKYHRTGGVEFSVGVFLNIGEDHISPVEHPD-FEDYFASKLMIF 242

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               +  +    D   + +      +     S  +    I+  ++    +  +  +    
Sbjct: 243 RQSAAACVNLDSDFAERILTAAESCSKIYTFSTKFSTADIYASEIRRDGDATRFLVRTPR 302

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +    LPG F V NAL A     A+G+  + V   L +  V PGR E   T      
Sbjct: 303 YTRELSMGLPGSFNVENALAAVAAAEALGVPESAVAAGLAEATV-PGRMETFNTPDGKLT 361

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDYAH   SLE +L ++R    GR + V FGC G +   +R  MG+ A   AD  I+T
Sbjct: 362 VIVDYAHNGMSLEALLSSVRREFPGRQLTVLFGCTGGKGLDRREGMGQAAGRWADRIILT 421

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           +D+P  E+   I A+I   I  F        +R EA+  AI   +   V+V+AGKG E  
Sbjct: 422 EDDPGPEEVPDICADIGGYIAPFGKTWTVIPDREEAVERAILEAHTPAVVVLAGKGAEQQ 481

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
               NG +    D  + R  L
Sbjct: 482 QKRKNGPEPCVPDSLLARRAL 502


>gi|149917684|ref|ZP_01906180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149821466|gb|EDM80866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 483

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 144/446 (32%), Positives = 206/446 (46%), Gaps = 23/446 (5%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+AQGA A++               S+  I+ V      +S  A+  YG       ++
Sbjct: 45  EDALAQGAAAVLTDD-------RELAASDPRIVFVPALADEVSGLAASFYGHPGRALKVV 97

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
           AVTGT GK+S   F  Q+  R GL +  +G          +D+  TTP    L + L+  
Sbjct: 98  AVTGTCGKTSTTFFTAQLADRVGLGAAVMGTLGMGRLGDLRDSGHTTPQHAMLQRELARY 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G+  V++EASS GL+  RL G+ + AG FT LGRDH+D H+T +AY  AK RLF+  
Sbjct: 158 VDEGLGLVAIEASSAGLEMDRLGGVPIDAGVFTMLGRDHLDRHRTMEAYAAAKWRLFD-- 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-----T 292
                 A++ ADD   +   +R        +        + L +V     +QQ       
Sbjct: 216 AYAPEFAVLGADDPTGEAWARRLRERCAVTVFGAEPRPELDLPRVHIEGLEQQRAGLGVR 275

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++    +        G FQ +N   A      +G+    ++   E L   PGR E     
Sbjct: 276 LASTWGEAAVSIRALGAFQAHNLAAALATLARLGVPWPELVVACEGLSGPPGRMEPYAAP 335

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                  +DYAHT  SL   L + R +  G R+  VFGCGG RD GKR  MG  A   AD
Sbjct: 336 GTPLC-LIDYAHTPESLTFALDSARALAPGGRVWCVFGCGGGRDSGKRGEMGAAAEGSAD 394

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + +VT DNPR EDPE I A ++ G+         G R +AI  A++    +DV+VVAGKG
Sbjct: 395 VVVVTTDNPRHEDPEAIAAAVVAGMETPSRARVIGERGQAITRALDEAAPEDVVVVAGKG 454

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HE V I  +   +   D D +   +G
Sbjct: 455 HERVQIFADRRVEW-SDRDFVAAYMG 479


>gi|227524711|ref|ZP_03954760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088195|gb|EEI23507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 514

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 112/520 (21%), Positives = 193/520 (37%), Gaps = 51/520 (9%)

Query: 1   MKLQ--DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L+  DL+ K                 ++    V+ +S+ +    +F    GN      
Sbjct: 14  MLLKEHDLLVK-----------SQFSRLDQSFQSVAYNSKVVSDNCLFFC-KGNFR--EA 59

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
           ++  A  +GA   V    Y             P ++V N +K +SL ++  +G       
Sbjct: 60  YLADAQQRGASGYVSEKQY--------HNVTIPGIIVKNIQKSMSLLSAAFFGFPQNSLP 111

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            +A TGT GK++ A F + I  +         S         S     + LTTP  + L 
Sbjct: 112 TIAYTGTKGKTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLF 171

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             ++      +TH+ +E SS    + R+  ++   G F N+  DHI  ++          
Sbjct: 172 TNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLRYDVGVFLNISPDHIGRNEHPTFADYLHC 231

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +    +  K+      +D         +A +    +     +G  ++ +       +   
Sbjct: 232 KEQLLVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLA 291

Query: 292 TISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               E K                                V+A +  A+       +E+  
Sbjct: 292 DSLSENKIQLISVSDKAKQLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGL 351

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
               VPGR E   T   G  IYVDYAH   SL  +L  ++     G +IV+ G  GD+  
Sbjct: 352 SHTTVPGRMEIYSTKQHGT-IYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGI 410

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTA 452
            +R  +GK   + A++A +T D+P +EDP+ I  EI   I           +R  AI+ A
Sbjct: 411 DRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAYIDPARVKTSYIADRTSAIQKA 470

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    + D++VVAGKGH+    +       + D  I+  +
Sbjct: 471 VLESKQGDLVVVAGKGHDAFQKINGKNVPYAGDATIVANL 510


>gi|323126663|gb|ADX23960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 436

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 107/454 (23%), Positives = 192/454 (42%), Gaps = 29/454 (6%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           F A  G       ++ +AIA+G    V    Y L         + P+++V + +K +SL 
Sbjct: 6   FFA-KGATFK-AEYLKEAIAKGLPLYVSEVDYKL---------DIPVVLVTDIKKAMSLI 54

Query: 106 ASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRL 162
           A   Y    +   +L  TGT GK++ A F   I + S   +      T+        ++L
Sbjct: 55  AMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFKSQL 114

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TTP  + L   ++     G+TH+ +E SS      R+ G+    G F N+  DHI     
Sbjct: 115 TTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLNISPDHIGPI-- 172

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +          + LL + S A++          +          ++      +  L   
Sbjct: 173 -EHPTFEDYFYHKRLLMENSRAVVINSGMDHFPFLA-------NQVANQEHAFYGALSDN 224

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               ++     +       +   L G F   NA+ A   C+ +G   A + + + K   V
Sbjct: 225 QITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRV 283

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E +   +   +++VDYAH  +SLE +L  +    +G ++++ G  G++ + +R   
Sbjct: 284 PGRMEVLTMTNH-AKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRADF 342

Query: 403 GKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLN-KQ 459
           G +     ++  I+T D+P  EDPE I  EI   I   I+   +R +AI+ A+ +    +
Sbjct: 343 GAVINQHPNLTVILTADDPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPE 402

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           D +++AGKG +   IV   +   + D  + +  L
Sbjct: 403 DAVIIAGKGADAYQIVKGEKAPYAGDLAVAQRYL 436


>gi|227513568|ref|ZP_03943617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227083441|gb|EEI18753.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 511

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 112/520 (21%), Positives = 193/520 (37%), Gaps = 51/520 (9%)

Query: 1   MKLQ--DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L+  DL+ K                 ++    V+ +S+ +    +F    GN      
Sbjct: 11  MLLKEHDLLVK-----------SQFSRLDQSFQSVAYNSKVVSDNCLFFC-KGNFR--EA 56

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
           ++  A  +GA   V    Y             P ++V N +K +SL ++  +G       
Sbjct: 57  YLADAQQRGASGYVSEKQY--------HNVTIPGIIVKNIQKSMSLLSAAFFGFPQNSLP 108

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            +A TGT GK++ A F + I  +         S         S     + LTTP  + L 
Sbjct: 109 TIAYTGTKGKTTSAYFTKSILDKVYDRKVALFSTINTVVGNKSEDVIKSSLTTPESLDLF 168

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             ++      +TH+ +E SS    + R+  ++   G F N+  DHI  ++          
Sbjct: 169 TNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLRYDVGVFLNISPDHIGRNEHPTFADYLHC 228

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +    +  K+      +D         +A +    +     +G  ++ +       +   
Sbjct: 229 KEQLLVNSKKCVINADSDHMVDVYYTAKATSQPEDIFVYHRKGSTMNEQLPKDFEYQSLA 288

Query: 292 TISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               E K                                V+A +  A+       +E+  
Sbjct: 289 DSLSENKIRLISVSDKAKQLGIDGTYEISIAGDYNEGNAVSAAITSAMMGAHPTEIEYGL 348

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
               VPGR E   T   G  IYVDYAH   SL  +L  ++     G +IV+ G  GD+  
Sbjct: 349 SHTTVPGRMEIYSTKQHGT-IYVDYAHNYGSLHSVLDFLKKQSPDGNVIVITGSTGDKGI 407

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTA 452
            +R  +GK   + A++A +T D+P +EDP+ I  EI   I           +R  AI+ A
Sbjct: 408 DRREGLGKAINESANVAYLTTDDPATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKA 467

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +    + D++VVAGKGH+    +       + D  I+  +
Sbjct: 468 VLESKQGDLVVVAGKGHDAFQKINGKNVPYAGDATIVANL 507


>gi|227534585|ref|ZP_03964634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187834|gb|EEI67901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 517

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 108/502 (21%), Positives = 195/502 (38%), Gaps = 47/502 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    ++  ++A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +      +  T              + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++R+ G+    G F N+  DHI     +   F   +    +LL      +I A+  + 
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299
            +V   A           +       K+     + +  +   +  +              
Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310

Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 +   L G+F   NA  A       G+D++  +  + K+ + PGR E       G
Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A 
Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T D+P  EDP  I  EI   I        +  +R +AI  AI      D++VVAGKG +
Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSGPNDIVVVAGKGAD 488

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V         D  +++++
Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510


>gi|324993698|gb|EGC25617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK405]
 gi|324994989|gb|EGC26902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK678]
 gi|327462968|gb|EGF09289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1]
 gi|327474571|gb|EGF19976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK408]
          Length = 481

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 113/497 (22%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  Q   +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQTLSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NNRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I   D    +++K    +            +        I ++           
Sbjct: 234 DNSRAVIVNSDMDHFQIVKEQVAS-------MEHDFYGAGSSNTIIDSQAFSFEVAGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 287 GRYDIQLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIIE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +   S D  +  + L
Sbjct: 465 GEKVAYSGDYALAEKYL 481


>gi|327490129|gb|EGF21917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1058]
 gi|332367212|gb|EGJ44947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1059]
          Length = 481

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 112/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  Q   +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQTLSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NNRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I   D    +++K    +            +        I ++           
Sbjct: 234 DNSRAVIVNSDMDHFQIVKEQVAS-------MEHDFYGAGSSNTIIDSQAFSFEVAGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 287 GRYDIQLIGHFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   I+ 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIIE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVTYPGDNALAEKYL 481


>gi|301065370|ref|YP_003787393.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|300437777|gb|ADK17543.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
          Length = 517

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 108/502 (21%), Positives = 194/502 (38%), Gaps = 47/502 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL--FIPQAIAQGAEAIVVSSAYSLQ 80
               +  +  ++ DSR +    +F    G+K       ++  A   GA   V    Y   
Sbjct: 24  QNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVEG 79

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQ 138
           +           L+V N  K +++ ++  +    ++  ++A TGT GK++ + F + I  
Sbjct: 80  N-------GLNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILN 132

Query: 139 RSGLSSFQIGPT-----STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            +      +  T              + LTTP  + L + +      G+TH+ +E SS  
Sbjct: 133 EARPRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAVENGMTHLVMEVSSQA 192

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++R+ G+    G F N+  DHI     +   F   +    +LL      +I A+  + 
Sbjct: 193 YLRNRVFGLTYDVGFFLNITPDHIG--PNEHPTFANYLHNKLQLLVNARKVVINAETEHF 250

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------------- 299
            +V   A           +       K+     + +  +   +  +              
Sbjct: 251 DQVYAAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAA 310

Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 +   L G+F   NA  A       G+D++  +  + K+ + PGR E       G
Sbjct: 311 LNIGGHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKI-PGRMEHTKVAGHG 369

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             +YVDYAH   S++ +L  ++      R++VV G  GD+   +RP   K+  + A  A 
Sbjct: 370 A-VYVDYAHNYASMKALLSFLKHAYKDPRLLVVVGSPGDKGVSRRPGFAKVLTEFATEAF 428

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           +T D+P  EDP  I  EI   I        +  +R  AI  AI      D++VVAGKG +
Sbjct: 429 LTTDDPGYEDPANIIEEIDSKIDHSKVKVHKVLDRQRAIAEAISDSRPNDIVVVAGKGAD 488

Query: 471 TVHIVTNGEKKMSVDCDIIREI 492
               V         D  +++++
Sbjct: 489 PYQKVRGVNTPWPTDMAVVKQV 510


>gi|215431088|ref|ZP_03429007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis EAS054]
          Length = 379

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 119/369 (32%), Positives = 166/369 (44%), Gaps = 12/369 (3%)

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
            S+    V+   + +G  +  IG            + LTTP    L   L+ +  +GV  
Sbjct: 1   NSTTTYLVEGGLRAAGRVAGLIGTIGNRVGGADLPSALTTPEAPTLQAMLAAMVERGVDT 60

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      +  
Sbjct: 61  VVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRART 120

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL- 303
            +   D  +   M         V +      +            QQ T          + 
Sbjct: 121 AVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIG 180

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    VDYA
Sbjct: 181 IRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYA 238

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           H   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR E
Sbjct: 239 HKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDE 297

Query: 424 DPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           DP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET      
Sbjct: 298 DPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGG 356

Query: 478 GEKKMSVDC 486
           G  +   D 
Sbjct: 357 GRVRPFDDR 365


>gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
 gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
          Length = 510

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 132/505 (26%), Positives = 212/505 (41%), Gaps = 28/505 (5%)

Query: 9   KDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K   +L++ +S++ +       I+ +  DSR +  G +FVAI G   DGH FIPQAI   
Sbjct: 3   KTLADLLSGVSVYHLIGDPATPISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAI--- 59

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK- 126
             A   +     + +   + +  P++VV ++R  L+  A+  Y    + +  +  T  K 
Sbjct: 60  -AAGAAAVVVDQRYWHGAVSAEVPVVVVADSRVALAPLAAAFYEYPGQQLTTIGITGTKG 118

Query: 127 -----SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
                   A  +    +  G+ S       T      D R +TP    +   L  +   G
Sbjct: 119 KSTTTDLTAQLLAAAGRTVGMISTVDFQIGTRRW-PNDTRQSTPEAPEVQALLREMVVAG 177

Query: 182 VTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF--NAKMRLFEEL 237
                +EA+SH L     RL G         N+G +H+D+H T + Y    A++      
Sbjct: 178 CDTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAE 237

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               + AI+ ADD +    +    +   R+    +    +  + V +      + I    
Sbjct: 238 RHGPTWAIVNADDPHHGTFLAAVPSQTMRLRYALHAPADVQGQIVHSGPASSHMRIHSPW 297

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            + +   PLPG F   N L A  + +  G+        +  +    GR        +   
Sbjct: 298 GEIEVNVPLPGRFNASNVLAALTVALTQGVPLERAAAAVAHVRAPRGRM-VSINVGQPFT 356

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VDYAH  +S E I   +R   +GRII VFG  G+RD  KR I G+IA  + D+ ++TD
Sbjct: 357 VIVDYAHNPDSFEQIFTMLRPQVTGRIIAVFGSAGERDVSKRAIQGEIAGRMCDLLVLTD 416

Query: 418 DNPRSEDPEKI---------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++PR ED E I         RA    G  G++   NR +AIRTAI      D++++ GKG
Sbjct: 417 EDPRGEDREAIIAQIAAGAERAGKRPG-SGYLCIPNRAQAIRTAIAAARPGDMVLLLGKG 475

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
           HE   I  +       +    R  L
Sbjct: 476 HEGSIIYADYTLPW-DEEGEARRAL 499


>gi|325971615|ref|YP_004247806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
 gi|324026853|gb|ADY13612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
          Length = 493

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 124/508 (24%), Positives = 200/508 (39%), Gaps = 34/508 (6%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L+ L+     +          Q     I  +S  S+   A  +F A  G + DG L+
Sbjct: 1   MKTLRTLLEAIGID-------STPQNASILIETISQHSKQCTANSVFFAFHGLRTDGILY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           I +AI  GA  I+     S  +  A ++ +     V       +L  S L     +   I
Sbjct: 54  IQEAIEHGAVCIISDQNLSNLNLPAKVQWH----QVHKPHTAFALMCSALNDNSQDKLGI 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKAL 174
           + V+GT GKS+   ++ QI + +G+ +  +   S            R +TP P  L   L
Sbjct: 110 IGVSGTDGKSTTCDYLYQILEANGVKTGLLTTVSMDDGSGKVDSPFRQSTPEPDQLHVFL 169

Query: 175 SYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  V  V +E +SH L     RL GI   A   T +  +H+++H + + Y  AK+ 
Sbjct: 170 RRCVENKVQKVILECTSHALSDTFDRLAGIHFEAAIVTKVTSEHLEFHHSLEEYTQAKVN 229

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L           +        +        +L             +       Q  
Sbjct: 230 LVRSLKDGGLFVTSTDNAKLEAFTAELRSTTKALILGKDVM--------LRIEFMGYQGV 281

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +            L         L        +GID   +L  ++ L  V GR + +  N
Sbjct: 282 VVDILDQRIQTSLLLPSLATNALLATFCASHLLGIDVTALLVLIKSLKPVKGRMQQI-EN 340

Query: 353 SRGGRIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + G R  +D+AHT+++ + +     RT   G II VFGC G+RD  KR  MGKIA     
Sbjct: 341 TLGVRTIIDFAHTADAYDGIFFFAKRTCEGGDIIAVFGCAGERDTSKRSPMGKIANKYCS 400

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             I+T+++PR E  ++I +++   +        E  +R EAIR A+ +    D L+  GK
Sbjct: 401 TIILTEEDPRREGNQQIFSDLRFHMNNPACRVWEIESRREAIRKAVSIAQCGDTLLFLGK 460

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGL 495
           GHE      +G+     + + +   L L
Sbjct: 461 GHEKTIERMDGKISW-DEVEEVEMALRL 487


>gi|325696310|gb|EGD38201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK160]
          Length = 481

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ K  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKKDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+    G F N+  DHI   +     F         L+ 
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYNKRLLMD 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+ +   + + V ++  +        G        +        +          
Sbjct: 235 HSRAVIVNSGMDHFQIVKEQVASMEHDFYGAGSSNTITDSQAFSFEAAGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     + + +     VPGR E +   + G +I+
Sbjct: 287 GHYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAT-TRVPGRMEVLTQKN-GAKIF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVTYPGDYTLAEKYL 481


>gi|325694972|gb|EGD36876.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK150]
          Length = 481

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 112/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSRQADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+    G F N+  DHI   +     F         L+ 
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYNKRLLMD 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+ +   + + V ++  +        G        +        +          
Sbjct: 235 NSRAVIVNSGMDHFQIVKEQVASMEHDFYGAGSSNTITDSRAFSFEATGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 287 GHYDIQLIGHFNQENAVAAGLACLRLGASLKDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G++     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVDKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVAYPGDYALAEKYL 481


>gi|327470473|gb|EGF15929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK330]
          Length = 481

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 113/497 (22%), Positives = 205/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L   ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHHPALLSTMNTTLDGETFFKSTLTTPESLDLITMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I        +++K                 +          ++     +     
Sbjct: 234 DNSRAVIVNSGMDHFQIVKEQVACL-------EHDFYGAGSSNTITDSQAFSFEATGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +I+
Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLKDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G++     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVAYLGDYALAEKYL 481


>gi|255994449|ref|ZP_05427584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
 gi|255993162|gb|EEU03251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
          Length = 505

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 108/509 (21%), Positives = 187/509 (36%), Gaps = 36/509 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I     +L  +  +         ++ ++ DS+ +  G +FV   G       ++ +AI +
Sbjct: 3   IRSYIDDLKEENLLVNFDDVSFDVSNIAYDSKKVSNGTLFVC-KGAAFK-KQYLEEAIEK 60

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA   V    Y +         N P + V + RK +++ A R Y      +  +  T  K
Sbjct: 61  GACCYVSEDCYDV---------NIPQIRVGDIRKAMAVIAGRFYDHPDRKLTLIGITGTK 111

Query: 127 SSVASFVQQICQRS--------GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
               +                   +    G  +      +++ LTTP    L + LS  +
Sbjct: 112 GKTTTAYYIKAILDTFLLNSGKKPAGILSGIFNYYGKDYEESSLTTPETFELFEKLSNAA 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G+ ++ +E SS  L  HR  G+      + NL  DHI   +    + + K        
Sbjct: 172 ENGLEYLVMEVSSQALKYHRTYGLMFDFAGYLNLDEDHISPGEHSD-FEDYKASKLLLFK 230

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   +    + Y   + +          S            + A +   +  I     
Sbjct: 231 ACDVAVLNKDSEHYEDFLNECVDAKKVISFSSKGLDADYRACDINAKNGVLEFNIVYHDA 290

Query: 299 DFDFLFPL---------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             D   P+          GEF + NAL+A  +   + +    + E L  + V PGR E V
Sbjct: 291 SRDTDEPVRKSNFTILSSGEFNIDNALLATSIGSELNVPYEDMKEALYNVKV-PGRMEVV 349

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +  G    VD+AH   S   + + ++      +I +VFG  G +   +R +MG IA  
Sbjct: 350 K-SRGGRIAIVDFAHNKLSFIKLFEAVKKEYPDKKIAIVFGTPGGKAYDRRALMGMIAAK 408

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +T+D+P  E  E I  EI           +   NR +AI+ A E  + + ++++
Sbjct: 409 NADKVYITEDDPYREKAEDICEEIRAEAVKYSDDIVVVLNRQDAIKRAAEETDAEWIILI 468

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AGKG E       G   M  D   I  + 
Sbjct: 469 AGKGIENSIKRKEGWVPMEPDNKCIERVF 497


>gi|144897243|emb|CAM74107.1| UDP-N-acetylmuramyl-tripeptide synthetase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 343

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 155/339 (45%), Positives = 199/339 (58%), Gaps = 4/339 (1%)

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
           +     LTTP P  L +AL+ L+   +TH ++EASSHGLDQ RLDG+KL A  FTNL RD
Sbjct: 6   WPSRPSLTTPDPADLHEALAELAENSITHAAMEASSHGLDQFRLDGVKLQAAGFTNLTRD 65

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+DYH   QAY  AK+RLF +LLP++  A+I AD   +            RVL  G  G 
Sbjct: 66  HLDYHGDMQAYLAAKLRLFTDLLPEDGVAVINADCPVAA--QVAQAAGSRRVLRFGRAGA 123

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            + LK +    + Q + + V G       PL G FQ  NAL A GL I  G ++   +  
Sbjct: 124 ELALKDIRPDSHGQVLDLDVLGHSATIRLPLAGTFQAANALAALGLVIGCGGNALAAINA 183

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           LE L  +PGR + V        I+VDYAHT ++LE +L  +    +GR++VVFGCGGDRD
Sbjct: 184 LESLTEIPGRLQKVADKDS-APIFVDYAHTPDALETVLTALLPHATGRLLVVFGCGGDRD 242

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
            GKRP MG+IA  LADI +VTDDNPRSEDP  IRA I+    G +E  +R  AIR A+ +
Sbjct: 243 PGKRPQMGEIAARLADIVLVTDDNPRSEDPALIRAAIMTAAKGAMEIADRRTAIRHAVSL 302

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           L + DVLVVAGKGHE+  IV         D +  R+  G
Sbjct: 303 LRQGDVLVVAGKGHESGQIVGA-HTLPFDDAEECRQAAG 340


>gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella
           cibaria KACC 11862]
          Length = 508

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 115/514 (22%), Positives = 210/514 (40%), Gaps = 41/514 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L  +   E++    +       + ++  ++ +S  +    +   I G +     ++  AI
Sbjct: 3   LTAQQITEILADQDLLISTPEFKGELKHLAYNSNDVAPETLLF-IKG-RFK-AEYLTDAI 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTG 122
           A+G +AIV          S T  ++ P  VVD+    +S+ +   Y      +  + +TG
Sbjct: 60  AKGVKAIVA-------PTSFTHDTDLPTWVVDDVPAAMSVLSMAFYDYPQNKLALIGITG 112

Query: 123 TSGKSSVASFVQQICQ-----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           T GK+S      ++ +     +  LSS     T     F     LTTP  + L + ++  
Sbjct: 113 TKGKTSATYMAYEMLRVATDDKVALSSTLQVITGADPKFHYRAHLTTPESLDLFRWMAEA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ G++   G F N+  DH+   + +   F   +     L
Sbjct: 173 VANGMTHMVMEVSSQAYKMERVYGLRFNVGVFLNISPDHVG--ENEHPTFEDYLEHKMML 230

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I+ AD  +  E+++ A  A  R     Y  +     K    ++  +  +    
Sbjct: 231 FDHSEQIILNADSDHFSELIEHAELAVPRDGIWLYGREDEDSPKADVYYDTVEADLQGST 290

Query: 298 KDFD--------------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                             +   +PG+F   NA+ A      +G D+   +    ++  +P
Sbjct: 291 FAVREAGQQAARLGIAGDYHLDMPGDFNQGNAVAAMIATRLVGADTDA-MHEGLEVVKIP 349

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIM 402
           GR + + T + G  IYVDYAH   S+  +L  +R   T  ++ +V G  G++   +RP +
Sbjct: 350 GRMQVLTTQNHGT-IYVDYAHNYASIAALLNFVRTNETVEKLTIVVGAPGNKGVSRRPGI 408

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNK 458
           G+   + AD+  +T D+P+ EDP  I  EI   I       NR      AI  AI+    
Sbjct: 409 GQAVSEGADVVYLTSDDPQFEDPNAIADEIQAAITNDHVVINREMDRTIAITEAIKAAGP 468

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            DV+V+A KG +    +   +     D  + + +
Sbjct: 469 NDVVVLAAKGLDEYQKIGGVDTPYENDWAVAQRV 502


>gi|259502140|ref|ZP_05745042.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
 gi|259169953|gb|EEW54448.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
          Length = 516

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 110/507 (21%), Positives = 186/507 (36%), Gaps = 49/507 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSLQ 80
           +  +     V+ DSR + AG +F         G+    ++  A  QGA A V    Y   
Sbjct: 23  KLTDFTATSVAYDSRKVTAGTLFFC------KGNFLPKYLTMAREQGAVAYVAEQEYPE- 75

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                   + P ++V + ++ ++L  +  YG  P++ L +   +G     +         
Sbjct: 76  ------GGDLPAIIVKDEQEAMALLGAAFYG-FPQDELTIIAITGTKGKTTTAYMADHIL 128

Query: 141 GLSSFQI--------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           G ++ Q                +    + LTTP  + L   +      G+TH+ +E SS 
Sbjct: 129 GRATDQHVALFSTLDRVLGNRPADRFKSDLTTPESLDLFHDMRAAVDNGMTHLVMEVSSQ 188

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
              +HR  G+    G F N+  DHI  ++          +    +               
Sbjct: 189 AYKKHRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSGICLINAETAHLT 248

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                 +A      +      G  + L    AI  + +  +    +    L     + Q 
Sbjct: 249 DVYYTAKATTQPENIYLFARHGAAVQLPDGAAIDFEYRNDLEDLHESEFELAACSPKAQQ 308

Query: 313 --------------YNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGG 356
                         YN   A    I+  +  A   + +  L  V   GR E   T   G 
Sbjct: 309 LGIQGRYKTSVPGDYNEGNAVAAVISTALAGATAADAVATLDHVHIKGRMEMQKTRQHGT 368

Query: 357 RIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAI 414
            IY+DYAH   SL+ +L  + R   +G++ VV G  GD+   +R   GK  + +  D  I
Sbjct: 369 -IYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFGKALSEEHPDQII 427

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +T D+P  EDP KI  EI   I            +R  AI+ AI+  +  D++V+AGKG 
Sbjct: 428 LTTDDPGFEDPMKIAREINSHIDHDQVGAVQYIMDRPTAIKAAIDSSSNGDIVVLAGKGE 487

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGLI 496
           +    +   +   + D  I  + +  I
Sbjct: 488 DPYQKINGVDTPYATDSKIAADYIDEI 514


>gi|325978929|ref|YP_004288645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178857|emb|CBZ48901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 483

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 119/500 (23%), Positives = 207/500 (41%), Gaps = 35/500 (7%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++    +F E+I               +++S DSR      +F    G       ++ Q
Sbjct: 9   DILKNDHNFREIIFHNHYSLDWKENPSFSKISFDSREADNSTLFF-TKGATFK-KEYLEQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AI  G    V    Y L         + P ++V + +K +SL A   YG       I+A 
Sbjct: 67  AIENGLTFYVSQVDYEL---------DIPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAF 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F   I ++S  ++      T+        ++LTTP  + L K ++    
Sbjct: 118 TGTKGKTTAAYFAYNILKQSHKTAMFSTMNTTLDGKTFFKSKLTTPESLDLFKMMAIAVQ 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEEL 237
            G+TH+ +E SS      R+ G+    G+F N+  DH     H T + YF  K  L    
Sbjct: 178 NGMTHLIMEVSSQAYLVERVYGLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANS 237

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A +   +  +++V    H+   +      +        V               
Sbjct: 238 KAVVVNAGMDYFNVVAQQVANTPHDFYGKDSDNTIENGRAFDFDVTGKLA---------- 287

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               +   L G F   NA+ A   C+ +G   A + + + +   VPGR E +   + G +
Sbjct: 288 --GHYDIQLIGSFNQENAVAAGLACLRLGTSLADIQKGIAQ-TSVPGRMEVITQTN-GAK 343

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVT 416
           ++VDYAH  +SLE +L  +     G + ++ G  G++ + +R    ++     +   I+T
Sbjct: 344 VFVDYAHNGDSLEKLLSVVEEHQKGDLHLILGATGNKGESRRADFARVINAHPNLHVILT 403

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHI 474
            D+P  EDP+ I  EI   +   ++   +R +AI  A+   N + D +++AGKG +   I
Sbjct: 404 ADDPNYEDPQAIAEEIASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKGADAYQI 463

Query: 475 VTNGEKKMSVDCDIIREILG 494
           V       + D +I +  L 
Sbjct: 464 VNGERTAYAGDLNIAKNYLN 483


>gi|257877011|ref|ZP_05656664.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
 gi|257811177|gb|EEV39997.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
          Length = 506

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/499 (20%), Positives = 190/499 (38%), Gaps = 23/499 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F    G       ++  
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI QG +  +  + Y               ++V + R+ +++ A   YG   E ++ +  
Sbjct: 74  AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGHPQEQLVTIGI 125

Query: 123 TSGKSSVASFVQQICQR---SGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           T  K   +            +G           S       +  LTTP  + L K ++  
Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ GI    G+F N+  DHI   +     ++  +    EL
Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVE--HPTYDDYLYCKREL 243

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      I+     +   + +         ++ G       +++   +        S   
Sbjct: 244 IRNSKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGTDLKGFALSAASDVL 303

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +              +    AA L   +   S    + +    ++PGR   V     G  
Sbjct: 304 QVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPGRM-IVLEKENGAV 362

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDYAH   S + + +  R +   GR++ V G  G + Q +R  MG+   + AD   +T
Sbjct: 363 MIVDYAHNYLSFQSLSELARQLRPEGRLLFVTGSAGGKAQSRRADMGRALGEYADKVYLT 422

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P  E+ + I  EI   I       I + +R +A+++AI   + +D++++AGKG E  
Sbjct: 423 SDDPDFEEADAIAKEIAAAITNPEVAIIHEMDRAQAVKSAIAEADSKDIVIIAGKGAEQY 482

Query: 473 HIVTNGEKKMSVDCDIIRE 491
             V   +     D  + ++
Sbjct: 483 LKVAGKKVPYIGDLTLAQQ 501


>gi|297170221|gb|ADI21259.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 464

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 219/468 (46%), Gaps = 25/468 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V ++S++++   +F+++ G    G  ++    A  A+ I++ S+ ++            
Sbjct: 13  NVVTNSKYLKKNDVFLSLKG----GAKYLTSDQANLAKHILLDSSETIDLPK-------- 60

Query: 92  ILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++ + +       +    +       + L +TGT+GK+S  SF+ QI + + +     G 
Sbjct: 61  VIKIKDLNSTYLEWIDEYFDIDHSYFDNLFITGTNGKTSTLSFLSQIFKSNDIKHASSGT 120

Query: 150 TSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T  +     +N LTT  P+++   +S      + ++  EASS G+D++RL G+K+   
Sbjct: 121 LGTFINDKKIFNNELTTEEPVFIRNLMSKCFRLSIKNIIFEASSIGVDKNRLRGLKIDHA 180

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN+ RDH+DYH + + Y +AK +L       ++ A+ + D+  S+ + K        +
Sbjct: 181 IFTNISRDHLDYHGSLKKYIDAKFKLISNS-KAKTVAVNFDDEIISRHLRKMYSKETFTI 239

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S   +                +         F     +  +F +YN  ++      +  
Sbjct: 240 SSKNIESDIFFRVLKFYEDGNIEFLAETPWGKFQAASKIESKFNLYNLFLSLPYFQYVNN 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D       +E L +  GR       +    IY+DYAH+  +LE + K +      ++I+V
Sbjct: 300 DCEDFFAQVENLSLPYGRL----NKTEKENIYIDYAHSPKALESVCKYLYKKKKNKLIIV 355

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444
           FG GG+RD+GKR  MG+IA    +   VT DNPR+EDP +I   II GI        + +
Sbjct: 356 FGAGGERDEGKRYQMGEIADKYCEKIYVTSDNPRNEDPRQIADMIIDGIKGTDKICIELD 415

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           R  AI+ AI  L ++D+L++AGKGHE   IV + E     D + +++ 
Sbjct: 416 RSCAIKNAINELGEEDILLIAGKGHEKKQIVGD-EYLDFSDFEEVKKC 462


>gi|116492429|ref|YP_804164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102579|gb|ABJ67722.1| UDP-N-acetylmuramyl tripeptide synthase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 507

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/515 (21%), Positives = 193/515 (37%), Gaps = 41/515 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGH---LF 59
           DL       ++ +  +       + +    +S DSR ++ G++F         G+    +
Sbjct: 2   DLEIATVKAILTEHDLLKEIKSTKTVANTGISYDSRTVKPGYMFFC------KGNFKPEY 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--I 117
           +  A   GA   V  + Y          +    ++V N  + +++ ++  Y     +  I
Sbjct: 56  LSVARQNGATTYVSENEYPE-------GTGMTAIIVTNVTRAMAVLSATYYNFPQNDLFI 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           + +TGT GK+S A F   I  +   +     S               + LTTP  + L  
Sbjct: 109 IGITGTKGKTSSAYFAHSILNQKYPNQVALFSTIDRIVGPKPEDQFKSDLTTPESMNLFH 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAK 230
            +      G+ ++ +E SS    + R+ G+K   G F N+  DH   + H+  + Y + K
Sbjct: 169 DMRVAVDNGMKYLVMEVSSQAYLRDRVYGLKFDCGIFLNITPDHIGRNEHKDFEDYLHCK 228

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           ++L          A     D                + S   +   +         +   
Sbjct: 229 LQLMVNSKRCIIDADTDRFDDVFGAAKATTDPEQIYLFSADVENGGVDFLIQDEEDDLTS 288

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--------VV 342
              ++                  N         A     A  L  +            V+
Sbjct: 289 NRFTLVESSSKAEAFHVAGDYDLNVAGDYNQSNATAAIIAAALADVTYQDAVLPLKSIVI 348

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E +     G  ++VDYAH   SL  +LK ++     G++IVV G  GD+   +R  
Sbjct: 349 PGRMEHLNVPGHGV-VFVDYAHNYASLHALLKFLKHQYHDGKVIVVVGSPGDKGISRRAG 407

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLN 457
            G+   + ADIA +T D+P  EDPE+I  +I+  I        +  +R +AI  AI   +
Sbjct: 408 FGQALSEQADIAYLTTDDPAFEDPEQIIQQIMDNIKPGTVEVRQVLDRHDAIEQAIMNSS 467

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           ++DV+V+AGKG +    V   +     D  +  E+
Sbjct: 468 EKDVVVLAGKGEDPYQKVGGVDTPWPTDMGVAEEV 502


>gi|227432271|ref|ZP_03914266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351970|gb|EEJ42201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 490

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 108/506 (21%), Positives = 197/506 (38%), Gaps = 39/506 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L     +    L+   ++       +   + +  D+R +Q   +FV I G  +    +
Sbjct: 1   MRLT---TETIQNLLVYHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK--RAY 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL- 118
           +      G   ++      +         + P   V N +K LSL +   +    E +  
Sbjct: 55  LDNV--HGITGLITEKKIDV---------DLPQWQVTNVQKALSLLSMAFFDYPQEQLWI 103

Query: 119 -AVTGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAK 172
            A TGT GK++ A F   + + +  +           T   +S  + + LTTP    L K
Sbjct: 104 GAFTGTKGKTTAAYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFK 163

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAK 230
            +  +   G+TH+ +E SS    ++R+ G++   G+F N+  DH   + H T + Y   K
Sbjct: 164 DMRQVVDNGMTHLVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHK 223

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + L +        A     D       K             Y  +    ++     ++  
Sbjct: 224 LMLLDHSDEVIVNAETDHFDTIYTYAKK------THHKVYTYSRQMFTSEESAIHESRFT 277

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V  S   +               +  +AA + ++        +        +PGR   + 
Sbjct: 278 VVKSEFNEMLGSYRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKGLDEVFIPGRMLSLP 337

Query: 351 TNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            N  G   +VDYAH   S++ +         +GR++VV G  G++   +R   G +  DL
Sbjct: 338 INGHGV-AFVDYAHNFVSMQALLSFAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDL 396

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           AD+  +T D+P+ E+P  I  EI   I         + NRI AI  AI   N+ D+++VA
Sbjct: 397 ADVVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVA 456

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIRE 491
           GKG +    +   +     D  ++++
Sbjct: 457 GKGEDPYQKIDGVDVPYIGDYAVVKQ 482


>gi|315641870|ref|ZP_07896862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
 gi|315482438|gb|EFU72978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
          Length = 514

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 196/516 (37%), Gaps = 38/516 (7%)

Query: 2   KLQDL---------IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN 52
           KL+D+         + +   +    +++      +   + +S DSR      +F    G 
Sbjct: 14  KLKDIYAVLLREKMLKEVIIQQQWHITLPDHPIVDHVFHSLSYDSREADEATLFFC-KGQ 72

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           +    +F+ QA+  G +  V    Y   D           L+V + R+ +++ A   Y  
Sbjct: 73  QFK-EVFLEQAVTGGVKVYVSEQPYDSIDAVG--------LIVTDIREAMAMIAQFFYDH 123

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSP 167
               +  +  T  K   +            ++ +    S+            + LTTP  
Sbjct: 124 PENKLTKIGITGTKGKTSCAYFLKDSLEQATNHKTALFSSEETTLDGVHYTRSHLTTPEA 183

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L K ++     G+TH+ +E SS      R+ G+    G F N+  DHI   +      
Sbjct: 184 LDLYKQMAKAVENGLTHLVMEVSSQAYKTKRVFGLTFELGIFLNISPDHISPIEHPTFDD 243

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                  +  L + S  +I   D+   E++               +   + ++   A   
Sbjct: 244 Y---LYCKRQLIQHSKQMILNADSDYFELLAETCTLYHVPYVTFGRSLTVDVEIQDATDT 300

Query: 288 KQQ----VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +       T+S    +  +   + G F   NA  A  +   +G     +        V+P
Sbjct: 301 RSFDLIAHTLSFSDLEGGYRLAILGTFNHDNATAALLVSHLLGFS-EKISRQAIANTVIP 359

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIM 402
           GR   +   ++   I +D+AH   S++ + +    +  +G++I++ G  G +   +R  +
Sbjct: 360 GRMHVIDEPNQPL-ILIDFAHNYLSIKAVGELGHHLRPNGKVIILTGSTGGKALSRRADI 418

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNK 458
            K   ++AD AI+T D+P  EDP  I  EII  I         +  R +AI  A+     
Sbjct: 419 AKALSEIADEAILTSDDPNFEDPAAIAKEIISHIDNDALSITVETQREKAIAIALSHATT 478

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           +D++ + GKG E    +    +    D ++++++L 
Sbjct: 479 EDIVAICGKGTEKEMKINGLGEPYPGDYEVVQQLLN 514


>gi|291521934|emb|CBK80227.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 514

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 106/511 (20%), Positives = 198/511 (38%), Gaps = 30/511 (5%)

Query: 1   MK---LQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           MK   L++  Y D    ++ L+   M  R+   I  ++ DSR +  G +F+   G     
Sbjct: 1   MKNYTLKE--YADLLSSVDMLAEAEMMGRDETVITYLTYDSRAVTPGTLFIC-KGAAFK- 56

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
             ++  AI  GA A V    Y  +       +  P L+V + RK +   A   + K  + 
Sbjct: 57  EQYLENAIRAGAVAYVSEVQYETE-------TKVPCLIVKDIRKAMPPLAEMYFNKAWQE 109

Query: 116 -NILAVTGTSGKSSVASFV------QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
             ++   GT GKS+ A ++               S+             Q++ +TTP  +
Sbjct: 110 LTVIGFGGTKGKSTSAYYMKAIVDDYMAATGGKESAVLSSIDIYDGVIRQESHITTPESV 169

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L + + +    G+T++ +E SS  L   R++ ++     + N+  DHI   + +     
Sbjct: 170 ELHEHMRHAVDSGITYLEMEVSSQALKYDRVNNMQFDVAVYLNISEDHISPIEHKDFEDY 229

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              ++    L K++   + A D   + +         +  S+       +   +     +
Sbjct: 230 ISSKMKMFALAKQAVVNLDA-DFVERALKAAEDAGSFKTFSLKDPSADFYGYNIHKEDGE 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              ++  +  D  F   +PG F V NA+        + I    +   L +     GR E 
Sbjct: 289 IIFSVKCDKFDETFSLTMPGLFNVENAVAVVAAATLLNIPLEYIKSGLHRARSS-GRMEL 347

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +  +     VDYAH   S E +  + R       I+ +FGC G +   +R  +G IA 
Sbjct: 348 YTSADKRVTAVVDYAHNKLSFEKLFGSTREEYPDHDIVAIFGCPGYKAYIRRKDLGLIAG 407

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLV 463
           + +    +  ++P  E  ++I  +I   +      +    +R  AI  AI    +  VL+
Sbjct: 408 EYSKKVYLVAEDPGKEPVQQISEDIAQYVAQKNCPYEIIEDRGVAIHKAIMECKRPTVLL 467

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + GKG+ET             D + ++E L 
Sbjct: 468 ITGKGNETRQKYGTIYADCRTDVEYVKEYLE 498


>gi|116617847|ref|YP_818218.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096694|gb|ABJ61845.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 490

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 109/505 (21%), Positives = 198/505 (39%), Gaps = 37/505 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L          L++   +      +   + +  D+R +Q   +FV I G  +    ++
Sbjct: 1   MRLT--TETIQNLLVDHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK--RAYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-- 118
                 G   ++  +   +         + P   V N +K LSL +   +    E +   
Sbjct: 56  DNV--HGITGLITETKIDV---------DLPQWQVTNVQKALSLLSMAFFDYPQEQLWIG 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           A TGT GK++ A F   + + +  +           T   +S  + + LTTP    L K 
Sbjct: 105 AFTGTKGKTTAAYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFKD 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKM 231
           +  +   G+TH+ +E SS    ++R+ G++   G+F N+  DH   + H T + Y   K+
Sbjct: 165 MRQVVDNGMTHLVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKL 224

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L +        A     D       K  H          Y  +    ++     ++  V
Sbjct: 225 MLLDHSDEVIVNAETDHFDTIYTYAKKAHHKV------YTYSRQMFTSEESAIHESRFTV 278

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             S   +               +  +AA + ++        +        +PGR   +  
Sbjct: 279 VKSEFNEMLGSYRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKGLDEVFIPGRMLSLPI 338

Query: 352 NSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           N  G   +VDYAH   S++ +         +GR++VV G  G++   +R   G +  DLA
Sbjct: 339 NGHGV-AFVDYAHNFVSMQALLSFAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDLA 397

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+  +T D+P+ E+P  I  EI   I         + NRI AI  AI   N+ D+++VAG
Sbjct: 398 DVVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAG 457

Query: 467 KGHETVHIVTNGEKKMSVDCDIIRE 491
           KG +    +   +     D  ++++
Sbjct: 458 KGEDPYQKIDGVDVPYIGDYAVVKQ 482


>gi|312869241|ref|ZP_07729413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095262|gb|EFQ53534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 516

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 108/505 (21%), Positives = 182/505 (36%), Gaps = 49/505 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFIPQAIAQGAEAIVVSSAYSL 79
               +     V+ DSR + AG +F         G+    ++  A  QGA A V    YS 
Sbjct: 22  KNLTDFTATSVAYDSRKVTAGTLFFC------KGNFLPKYLTMAKGQGAVAYVAEQEYSE 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                    + P ++V + +K ++L  +  YG  P++ L +   +G     +        
Sbjct: 76  -------GGDLPAIIVKDEQKAMALLGAAFYG-FPQDELTIIAITGTKGKTTTAYMADHV 127

Query: 140 SGLSSFQI--------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            G ++                       + LTTP  + L   +      G+TH+ +E SS
Sbjct: 128 LGRATDHHVALFSTLDRVLGNGPDDRFKSDLTTPESLDLFHDMRAAVDNGMTHLVMEVSS 187

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
               +HR  G+    G F N+  DHI  ++          +    +  +         D 
Sbjct: 188 QAYKKHRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSRVCLINAETADL 247

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE-- 309
                  +A      +      G  + L +  AI  + +  +    +    L     +  
Sbjct: 248 ADVYYTAKATTQPEDIYLFARHGAQVQLPEGAAIDFEYRNDLEDLHESEFELAACTPKAE 307

Query: 310 --------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                                VAA +  A+   +A           + GR E   T   G
Sbjct: 308 RLGLQRRYKTSVPGDYNEGNAVAAIISTALAGATAEDAAATLDHVHIKGRMEMQKTRQHG 367

Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIA 413
             IY+DYAH   SL+ +L  + R   +G++ VV G  GD+   +R   GK  + +  D  
Sbjct: 368 T-IYIDYAHNYASLKRLLAFLKRQTAAGKVTVVLGATGDKGISRRQGFGKALSEEHPDQI 426

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I+T D+P  EDP KI  EI   I            +R  AI+ AI+     D++V+AGKG
Sbjct: 427 ILTTDDPGFEDPMKIAREINSHIDHDQVGEIQYIMDRPTAIKAAIDSSGNGDIVVLAGKG 486

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
            +    +   +   + D  I  + +
Sbjct: 487 EDPYQKINGVDTPYATDSKIAADYI 511


>gi|257866935|ref|ZP_05646588.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257873268|ref|ZP_05652921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
 gi|257800991|gb|EEV29921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257807432|gb|EEV36254.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
          Length = 506

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 100/499 (20%), Positives = 189/499 (37%), Gaps = 23/499 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F    G       ++  
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI QG +  +  + Y               ++V + R+ +++ A   YG   E ++ +  
Sbjct: 74  AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGHPQEQLVTIGI 125

Query: 123 TSGKSSVASFVQQICQR---SGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           T  K   +            +G           S       +  LTTP  + L K ++  
Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ GI    G+F N+  DHI   +     ++  +    EL
Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVE--HPTYDDYLYCKREL 243

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      I+     +   + +         ++ G       +++   +        S   
Sbjct: 244 IRNSKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGADLKGFALSAASDVL 303

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +              +    AA L   +   S    + +    ++PGR   V     G  
Sbjct: 304 QVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPGRM-IVLEKENGAV 362

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDYAH   S + + +  R +   GR++ V G  G + Q +R  MG+   + AD   +T
Sbjct: 363 MIVDYAHNYLSFQSLSELARQLRPEGRLLFVTGSAGGKAQSRRADMGRALGEYADKVYLT 422

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P  E+   I  EI   I       I + +R +A+++AI   + +D++++AGKG E  
Sbjct: 423 SDDPDFEEASAIAKEIAAAITNPEVAIIHEMDRAQAVKSAIADADSKDIVIIAGKGAEQY 482

Query: 473 HIVTNGEKKMSVDCDIIRE 491
             V   +     D  + ++
Sbjct: 483 LKVAGKKVPYIGDLTLAQQ 501


>gi|32267364|ref|NP_861396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter hepaticus ATCC 51449]
 gi|46576947|sp|Q7VF14|MURE_HELHP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|32263417|gb|AAP78462.1| UDP-N-acetylmuramyl tripeptide synthase [Helicobacter hepaticus
           ATCC 51449]
          Length = 463

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 110/398 (27%), Positives = 169/398 (42%), Gaps = 18/398 (4%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQD 159
           L+      +  +  NI+ +TGT+GK++ A+ +  I    G +   +G           + 
Sbjct: 74  LNDILMANFSHNSPNIVGITGTNGKTTTAAIIYSILLDLGFNVALLGTRGFFINEHRIKP 133

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             LTTPS + L + L     Q      +E SSH ++Q R+ G+       TN+  DH+DY
Sbjct: 134 KGLTTPSMLELYENLCIAMEQKCNFFIMEVSSHAIEQERIAGLDFALKILTNITSDHLDY 193

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H++ + Y   K   FE    K   A     D        +A                  L
Sbjct: 194 HKSVEEYRRIKNSFFEGEGRKLLNA-----DEPYIYCTDKAAYFYGIEKKGNLSVDVYAL 248

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEK 338
           +     +   +       +       L G+  +YN L A   + I        + E LE 
Sbjct: 249 ENGIDGYISWRERDYKTNEQSAIQAHLYGKHNLYNTLAAIGAVKILTQEPLERIAEALEH 308

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V GR E V        + VD+AHT + +  I ++ R     +I VVFG GGDRD+ K
Sbjct: 309 FGGVSGRMEVVHN---MPLVIVDFAHTYDGMYQIFESFR---HCKIAVVFGAGGDRDKSK 362

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM 455
           RP MG  A   A    +T DNPR+E P+ I  +I+ G+        + +R +AI  A+E 
Sbjct: 363 RPKMGACAQQFAHKIYITSDNPRTESPKSIIEDILSGMQDGEYVFVEADRKKAIYMALES 422

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           L   +VL++ GKG E   I+ N EK    D +++R   
Sbjct: 423 LESDEVLLILGKGDEDYQIIGN-EKIYFDDREVVRNYF 459


>gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
 gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
          Length = 505

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 110/457 (24%), Positives = 193/457 (42%), Gaps = 20/457 (4%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
             + G +F+    +  D       AI +GA AI+             +    P  +V + 
Sbjct: 42  DCEPGDLFIPEAEDHTDLLSRCQAAIERGAAAILTEQ---------LLPLAIPQAIVPDA 92

Query: 99  RKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISS 155
           R+ L + +  + G     +  + +TG+ GK++ A  V  + + +  +   I       S 
Sbjct: 93  REALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAASQACGVISSLGYSDSI 152

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                +  TP    LA  +S +         +E SS GL Q R  G  L     TNL   
Sbjct: 153 EQVSTKCATPRSPKLAWWMSRMVKNKAAAAVIEMSSQGLSQRRTAGTSLDIAVLTNLRNV 212

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H   H +   Y  AK R+F   L     AII ADD  S+++++        V        
Sbjct: 213 HTSEHGSAANYLAAKKRIFSH-LKPGGLAIINADDHRSRQLLESLACPTLTVGLHAEADI 271

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              +          + TI+   +       + G+  V N L A  + +++GI+ + ++  
Sbjct: 272 SARVIDRSIAEQ--RFTITAGDETIQVRSRIIGDAHVANCLSAVAVGLSLGIELSTIVRG 329

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           +E +  +PGR + +        + VD A T ++L + LK  R +T GR+++VF   G+++
Sbjct: 330 IENVTYLPGRMQRLEVGQE-FGVIVDAASTPDTLAIALKTARRVTKGRVLLVFSASGEKN 388

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTA 452
           +  RP++ ++A   AD+A++T  NPR E P +I  +++ G            R EAIR A
Sbjct: 389 RDARPMLARVAEQGADLAVITSGNPRRESPREITHQLLDGFHRPAKAHFIPTRAEAIRWA 448

Query: 453 IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           +      D +++ G G  T H+V    K    D ++ 
Sbjct: 449 LGHAQPGDCVLICGHGDRTSHLVGT-HKVRHDDREVA 484


>gi|332362287|gb|EGJ40087.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1056]
          Length = 481

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  ++   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQNHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS    + R+ G+    G F N+  DHI   +     F         L+ 
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYNKRLLMD 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+     + + V ++  +        G     I  +        +          
Sbjct: 235 NSRAVIVNNGMDHFQIVKEQVASMEHDFYGAGSSNTIIDSQAFSFEAAGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +I+
Sbjct: 287 GRYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVTYPGDYTLAEKYL 481


>gi|221194981|ref|ZP_03568037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
 gi|221184884|gb|EEE17275.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
          Length = 519

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 180/480 (37%), Gaps = 22/480 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +  DSR I+ G +FV   G       F+  A+  GA A + + +++ +  +        
Sbjct: 34  GIDHDSRIIEPGHVFVC-KGAAFKP-EFLKSALEAGAVAYLCAESHAAELEAIAPTVPAL 91

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI--CQRSGLSSFQI 147
           I   +N R+ ++  ++ + G       ++ +TGT GKS+ A  ++ I         +  +
Sbjct: 92  IATDENLRRAMAESSAYVTGHPDHGLTMIGITGTKGKSTTACMLRAILDGDEPYEKTAIM 151

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G               TTP    L + L+     G+T++++E SS  L   R  G+ L  
Sbjct: 152 GSIEVFDGIEHGKPDNTTPEAPELWRHLANAQKCGLTYMAMEVSSQALKYDRTYGLHLDI 211

Query: 207 GSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA---- 260
             F N+GRDHI    H T + YF +KM++F+              +     V        
Sbjct: 212 AVFLNIGRDHISPVEHSTFEDYFVSKMKIFDMAKTAVINRNTEHYEDVMAHVRAVHERNP 271

Query: 261 -HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    S       I    + + +                  P+PG F V NAL A 
Sbjct: 272 ECCQHVYTFSATNPKADIWADDISSEYGLVSFRAHTPTWTGHLSIPMPGLFNVDNALAAI 331

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRT 378
            +   +G     +   L     V GR E + T  R     VDYAH   + +     + + 
Sbjct: 332 TVANLLGFSGEKLQYPLLN-THVSGRMELIPTKDRKVTALVDYAHNRLAYQKLFSSSSQE 390

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             +    VV G  G + Q +R  + +     AD  I T ++P  +DP +I AE+    P 
Sbjct: 391 FPNYGRYVVLGAVGGKAQERRRDLPEEGSKWADHLIYTTEDPAFDDPAEICAEMAAATPE 450

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              +    +R EAIR A+ +        ++ +  KG E    +         D  + +  
Sbjct: 451 DASYEIILDREEAIRQAVRLAYTDARPSIVYLLAKGDEDFQSICGKRVPWKTDAAVFKAA 510


>gi|332298508|ref|YP_004440430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
 gi|332181611|gb|AEE17299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
          Length = 557

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 145/538 (26%), Positives = 213/538 (39%), Gaps = 65/538 (12%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L+     E     S       +  I ++  DSR ++AG +F A+ G    G+ FI 
Sbjct: 4   RLSQLLTGFQHETAGGSS-------DPIITDICFDSRAVRAGSLFFALPGTHVHGNAFIA 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSN----TPILV-VDNTRKFLSLFASRLYGKHPEN 116
           +AIA+GA AIV           A    N     P+LV V + R  +S  A   Y    E 
Sbjct: 57  KAIARGAAAIVYQDDLPEDALRAAEERNNEAEAPVLVRVRDARFAMSPAADAFYDSPSEK 116

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLA 171
             ++ VTGT GKSS  SF+ Q+    G  +  I          + A     TTP    + 
Sbjct: 117 LAVIGVTGTEGKSSTVSFIWQLLGLCGKKAGFISTVQYSLGDDAIANPEHQTTPEAPIVQ 176

Query: 172 KALSYLSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           + L  +   G  +  VE+SSHGL    +RL  ++  AG F N+  +H+++H T + Y + 
Sbjct: 177 RQLYEMVQNGCEYAVVESSSHGLSRKTNRLGDVRFDAGVFMNVTHEHLEFHGTHEQYKSD 236

Query: 230 KMRLFEELLPKES-------------PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           K  LF  L   +                ++  +D  +               + G  GK 
Sbjct: 237 KANLFRALDAHDHLKTIGGTRRRVPAFGVVNLEDPAAAYFNDATEKTVYGFTTGGAAGKN 296

Query: 277 IHLKKVCAIHNKQQVTISV-----------------------EGKDFDFLFPLPGEFQVY 313
             +          + +                                   PLPG F VY
Sbjct: 297 ADIPLPEIPAEIPRFSADRVAAKSDGIAFTANVPPSDTIRATAPDPVAVTAPLPGAFNVY 356

Query: 314 NALVAAGLCI-AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           N L +        GI  A V E   +L  V GR   V    +   + VDYAHT +S E I
Sbjct: 357 NVLASLITVSTITGIPFARVAEKCPQLQPVKGRM-TVIDKGQPFEVIVDYAHTPSSFETI 415

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              +R     RIIV+FG GG+RD  KRP  G+IA    D+ I+ D++PR+EDP  +   I
Sbjct: 416 FPPLRKRARNRIIVLFGSGGERDTKKRPEQGRIAARWCDVVILADEDPRAEDPAALLEMI 475

Query: 433 IHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             G                 R +AIR A  +  + D++++ GK HE   I  +     
Sbjct: 476 AAGCRSAGKTEGNGLYVVPPRPQAIRKAFALAAEGDIVLLLGKAHENSIIYKDYTMPY 533


>gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 484

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 125/498 (25%), Positives = 212/498 (42%), Gaps = 26/498 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++ +     + QL           I   S++S H+Q   +FV   G   D H +I  AI 
Sbjct: 1   MLSETLKSFLKQLGALS-------IRRFSTNSEHVQCQDVFVCREGTSHDSHRYIESAIT 53

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTS 124
            GA AI+ +   S          + P+ V  +  + L L  A   Y       + +TGT+
Sbjct: 54  NGAVAIIATKPISA---------SVPVFVTGSYYQSLLLIKAFYQYPHKKIRHIGITGTN 104

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++VA  + Q+ +    S++        +   Q+   TTP  + L      ++   VT 
Sbjct: 105 GKTTVAHGLNQVLKTKRQSAYIGTLGVEYAGNKQELSNTTPDSVTLLNLFKDMADAQVTD 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SSH L Q R   + L  G  TN+GRDH+DYH+T   Y  AK+++ + + P  +  
Sbjct: 165 NVMELSSHALVQDRAGFVPLSVGVITNIGRDHLDYHKTLDGYVQAKLQILDRIQPNGTAV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I   D   +  + +          S+      ++++ +          ++ +G       
Sbjct: 225 INLDDHHANVAIERACSRVNVLTFSMNNSEADLYVEDLNVEPFGATFVLNNQGNKERVFS 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LP  F V N L  A   +A+    A +   L  +    GR     +   G    VDYAH
Sbjct: 285 QLPFLFNVENTLAMAATLLALNWSLADIANALNSVVAPDGRS-KYLSLDNGALALVDYAH 343

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             + L  + + I++ ++ R+I V G  GDR +     +GK+    +D+ I T DNP  E 
Sbjct: 344 NFDGLTALYQGIQSQSAKRVITVVGVTGDRIRDA-ADIGKLCATHSDVVIFTSDNPLGEM 402

Query: 425 PEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN---GE 479
            E I   +   +   +  E  +R EAI+ A ++    D+++V GKG ET   +T    G 
Sbjct: 403 QEDIFRALTSQVSPTLCYEISDRYEAIQLAKQLSRGGDLILVCGKGSETHQYITTNQVGR 462

Query: 480 KKMSVDCD--IIREILGL 495
           ++   D     + E+L +
Sbjct: 463 QRYIGDVAALTLEEVLRV 480


>gi|325687075|gb|EGD29098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK72]
          Length = 481

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 115/497 (23%), Positives = 206/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLELIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I        +++K    +               +K   A   +    ++     
Sbjct: 234 DNSRAVIVNSGMDHFQIVKEQVASLEHDFYGADSSNT--IKDSQAFSFEATGKLAGNYDI 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 292 -----QLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLRNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVAYPGDYALAEKYL 481


>gi|152993861|ref|YP_001359582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
 gi|151425722|dbj|BAF73225.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
          Length = 432

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 106/392 (27%), Positives = 172/392 (43%), Gaps = 23/392 (5%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTP 165
             +G     ++ VTGT+GK++V + +              G           ++  +TTP
Sbjct: 53  AFWGLDAMKVVGVTGTNGKTTVTAAIYSFLLDLDKKPALQGTRGLFAEEKRIEEKSMTTP 112

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S +     +      G  +  +E SSH +DQ R++GI       TN+  DH+DYH T + 
Sbjct: 113 SILETLHNMKQTMDMGCNYFIMEVSSHAIDQKRIEGITFALKVHTNVTSDHLDYHGTVEE 172

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y   K   F +   K            +K+ +           S G      +  +  ++
Sbjct: 173 YRRVKSLFFADDTMKLL----------NKDDINNITYNPKNAYSYGVDEPATYKVQAFSL 222

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPG 344
            +     I    ++  F  P+ G F ++N + A G            + + +E    V G
Sbjct: 223 LHGITAGIKYMQEEATFHSPMMGLFNLFNLMAAIGSVHLLTKRPIQEICDVVENFAGVAG 282

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V   SR   + VD+AHT + +  +L++++      I VVFG GG+RD+ KRP+MG 
Sbjct: 283 RMEVV---SRDPLVIVDFAHTHDGIHAVLESMKD---RDISVVFGAGGNRDKEKRPLMGA 336

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
            A   A+   VT DNPR E PE I  +I+ G+          +R  AI+ A+E L   +V
Sbjct: 337 AAGRYANKIYVTSDNPRDEVPEMILEDILVGLHGKENVTATPDRRLAIKMALEALEPNEV 396

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           L++ GKG E    +  G K    D +++RE+L
Sbjct: 397 LLILGKGDEDYQEIK-GVKHHFDDREVVRELL 427


>gi|224437747|ref|ZP_03658694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 455

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 189/441 (42%), Gaps = 23/441 (5%)

Query: 63  AIAQGAE---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           A+  G     A++V S  ++    +       ++   +  K L      + G++P  I+ 
Sbjct: 24  ALENGVVKEEALLVRSKQNMAFIPSDFPQE-NLIESCDLGKVLLD---SIPGENP-RIVG 78

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYL 177
           +TGT+GK++ A+ +  +    G     +G      +    +   LTTPS + L + LS+ 
Sbjct: 79  ITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFA 138

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G  +  +E SSH + Q R+ G+       TN+  DH+DYH++ + Y   K   FEE 
Sbjct: 139 KAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFEER 198

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   A         +         G         G +     + A    +      + 
Sbjct: 199 GLKLINADEKYAQCQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDAHIAWRDNKECSQE 258

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 +              A + I        + + +E    V GR E V        
Sbjct: 259 SCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVVHHKPL--- 315

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VD+AHT + ++ I ++ R     +I VVFG GGDRD+ KRP MG  A + AD   +T 
Sbjct: 316 VIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGDRDKSKRPKMGACAFEYADKLYITS 372

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPRSEDP +I  +I  G+P        + + +R +AI  A+  L + +VL++ GKG E 
Sbjct: 373 DNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQALNELQENEVLLILGKGDED 432

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
             I+ N  K    D +++RE 
Sbjct: 433 CQIIGNN-KIYFDDREVVREY 452


>gi|324991345|gb|EGC23278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK353]
          Length = 481

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 115/497 (23%), Positives = 206/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I        +++     +            +        I ++     +     
Sbjct: 234 DNSRAVIVNSGMNHFQIVNEQVAS-------MEHDFYGTGSNNTIIDSQAFSFEAAGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +I+
Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVTYPGDYALAEKYL 481


>gi|34558000|ref|NP_907815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolinella succinogenes DSM 1740]
 gi|46576897|sp|Q7M8F9|MURE_WOLSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34483718|emb|CAE10715.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATELIGASE
           [Wolinella succinogenes]
          Length = 434

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 120/474 (25%), Positives = 204/474 (43%), Gaps = 58/474 (12%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  +S DSR       F+    ++     +   A  +G +  +       +D    +++
Sbjct: 9   EVEFISDDSRECTPKSAFLLTQSSRV----YEAAAREKGCKLFL-----EPKDLHRFLKT 59

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P++ V                         TGT+GK++ ++ +  I    G     +G
Sbjct: 60  DIPLIGV-------------------------TGTNGKTTTSAAIYSILLDLGYKVALLG 94

Query: 149 PTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +    +   LTTP  + L + +      G     +E SSH +DQ R++G+    
Sbjct: 95  TRGFFMNDELIEPKGLTTPPLLELYERIDRAKRAGCDFFVMEVSSHAIDQKRIEGLNFAL 154

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+DYH++ + Y   K   F++  P               +   +A      
Sbjct: 155 KILTNITSDHLDYHKSLEHYIQTKNSFFDDSTP-----------KLINKDESKAKFNLQN 203

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAI 325
            LS G +    +  K  ++H   +  I+   K+      L G+  +YN L A   +   I
Sbjct: 204 ALSYGIEHPSSYHVKAYSLHGGIEARIAFLEKEASLSSSLFGKHNLYNLLAAVSAVHRLI 263

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G +   + +  E+   V GR E V        + VD+AHT + +  I ++        I+
Sbjct: 264 GGELQEICDMAERFGGVEGRMERVSEEPL---VVVDFAHTEDGMRQIFES---FPHQEIV 317

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEK 442
           V+FG GGDRD+ KRP MG +A   A    +T DNPRSEDP  I  EI  GI      +++
Sbjct: 318 VLFGAGGDRDRSKRPKMGAVADRYAKRIYLTSDNPRSEDPLLIIEEIEKGIHHCQKCVKE 377

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            +R++AIR A++ L  Q+VL++ GKG E   I+ + +K    D + +   LG I
Sbjct: 378 PDRVQAIRRAVKELEAQEVLLILGKGDEAEQIIGS-QKIPMKDRETVLSALGEI 430


>gi|328946898|gb|EGG41035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1087]
          Length = 481

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 207/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDCISYDSREADASTLFF-VKGEAFK-REFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I        +++K    +            +          ++     +     
Sbjct: 234 DNSRAVIVNSGMDYFQIVKEQVASL-------EHDFYGAGSNNTIKDSQAFSFEAAGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +++
Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  ++    G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVQEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVTYPGDYTLAEKYL 481


>gi|118475066|ref|YP_891273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414292|gb|ABK82712.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 429

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 202/470 (42%), Gaps = 57/470 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ +S+  ++G  F  +  N      F   AI  GA  I             T +    I
Sbjct: 11  ITDNSKTCESGCFF--LKSNSN--AKFENDAIKSGAIII-------------TPKRAKTI 53

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L +D+                   ++ +TGT+GK++ A  +    +  G      G    
Sbjct: 54  LNLDD----------------GIRLIGITGTNGKTTTAFAIAFGLRSLGYKVGISGTRGA 97

Query: 153 ISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                Q  D  LTT   +     +      G  +  +E SSH + Q+R++G+      FT
Sbjct: 98  FICDKQIADKGLTTSQILETLSYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNFALKVFT 157

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH++    F+   R+       +SP +I  DD   K   K       +    
Sbjct: 158 NLSQDHLDYHKS----FSEYARVKSSFFDDDSPKLINGDDESIKFNHKNTMIYWLKNSDA 213

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI-AIGIDS 329
            +  +    K         +  I  + +  +    L G+F +YN L A G       +  
Sbjct: 214 SFFVENYDFKG------GIKANIKSKNETANLQSHLQGKFNLYNLLAAIGSIKFLSRVSL 267

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
               + + K   V GR E V   S+   + VD+AHT + +E +L     ++   ++VVFG
Sbjct: 268 QEAADSVRKFESVAGRVEIV---SKNPLVIVDFAHTPDGIEKVLDA---LSHDELVVVFG 321

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRI 446
            GGDRD+ KRPIMGKI    A I+IVT DNPR+EDP  I  +I+ G+          NR 
Sbjct: 322 AGGDRDKTKRPIMGKIVQKYASISIVTSDNPRTEDPNSIIDDILAGMQINNSVFSIENRK 381

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           +AI+ AIE+      +VV GKG E    + +G+K    D  +++EIL  I
Sbjct: 382 DAIKKAIELA-AGKTVVVLGKGDEPYQEI-SGKKYPFSDKLVVQEILSAI 429


>gi|323351057|ref|ZP_08086714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
 gi|322122781|gb|EFX94490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
          Length = 481

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   DILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A+  G    +  + + +           P+L+V++ ++ +SL     YG   + +  LA 
Sbjct: 66  AVTAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLVMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  +S   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G TH+ +E SS    + R+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NGRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S A+I        +++K    +            +          ++     +     
Sbjct: 234 DNSRAVIVNSGMDYFQIVKEQVASL-------EHDFYGAGSNNTIKDSQAFSFEAAGKLA 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +I+
Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G++     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGRLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVAYPGDYALAEKYL 481


>gi|313144193|ref|ZP_07806386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
 gi|313129224|gb|EFR46841.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 464

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 114/441 (25%), Positives = 189/441 (42%), Gaps = 23/441 (5%)

Query: 63  AIAQGAE---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           A+  G     A++V S  ++    +       ++   +  K L      + G++P  I+ 
Sbjct: 33  ALENGVVKEEALLVRSKQNMAFIPSDFPQE-NLIESCDLGKVLLD---SIPGENP-RIVG 87

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYL 177
           +TGT+GK++ A+ +  +    G     +G      +    +   LTTPS + L + LS+ 
Sbjct: 88  ITGTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFA 147

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G  +  +E SSH + Q R+ G+       TN+  DH+DYH++ + Y   K   FEE 
Sbjct: 148 KAKGCDYFIMEVSSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFEER 207

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   A         +         G         G +     + A    +      + 
Sbjct: 208 GLKLINADEKYAQCQDQYGDIGVFYYGVEKKGHLSVGAYALESGIDAHIAWRDNKECSQE 267

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 +              A + I        + + +E    V GR E V        
Sbjct: 268 SCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVVHHKPL--- 324

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + VD+AHT + ++ I ++ R     +I VVFG GGDRD+ KRP MG  A + AD   +T 
Sbjct: 325 VIVDFAHTHDGMKQIFESFR---HQKIAVVFGAGGDRDKSKRPKMGACAFEYADKLYITS 381

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           DNPRSEDP +I  +I  G+P        + + +R +AI  A+  L + +VL++ GKG E 
Sbjct: 382 DNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQALNELQENEVLLILGKGDED 441

Query: 472 VHIVTNGEKKMSVDCDIIREI 492
             I+ N  K    D +++RE 
Sbjct: 442 CQIIGNN-KIYFDDREVVREY 461


>gi|320528691|ref|ZP_08029843.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
 gi|320130901|gb|EFW23479.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
          Length = 506

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 107/509 (21%), Positives = 183/509 (35%), Gaps = 33/509 (6%)

Query: 1   MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK   L+D I     + +              +  VS DS+ +    +F+   G      
Sbjct: 1   MKKYLLKDYISFLQEKNVLGDVNLSDTCMNTVVALVSCDSQQVVRNTLFLC-KGVHFK-A 58

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  A+ +GA A +    Y           N P + + N R  ++  A+  Y   P   
Sbjct: 59  QYLQDAVNKGAFAYLSEVEYP--------EVNIPWIPLTNVRYAMANLATMYYND-PWKE 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---------TISSFAQDNRLTTPSPI 168
           L V G +G    ++    +         ++G                   ++ LTTP P+
Sbjct: 110 LNVIGLTGTKGKSTTTYYVKAILDTYLERVGKNESAVISSIGTYDGVERFESHLTTPEPL 169

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L +  S      +  V++E SS  L   R+ G+     +F N+G DHI   +    + +
Sbjct: 170 DLERHFSNAVESKIDFVTMEVSSQALKYDRVLGVNFSVAAFLNIGYDHISSVEHP-TWED 228

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                           +    D   + +            S        +   V  + N 
Sbjct: 229 YFASKLRIFEQCTYGLVNLDSDHCDEILDAAKAAKKVITFSEANDTADFYGYDVHKVGND 288

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +     D +F   +PG F V NAL A  +     I    +   L    V PGR E 
Sbjct: 289 IVFKVRGSDFDEEFKLSMPGLFNVSNALCAIAIARLYDIPVRDIQAGLYHAKV-PGRMEI 347

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             +N +     VDYAH   S + + +++R      R  ++FGC G + + +R  +G+IA 
Sbjct: 348 YTSNDKKITAIVDYAHNQLSFQKLFESVRSEYPGYRATIIFGCPGKKAKDRRHDLGEIAG 407

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEML---NKQD 460
             AD   +T+++   EDP  I  EI   +      +    +R +AI  A+E         
Sbjct: 408 KNADYIYLTEEDAGEEDPLAIAHEIARAVEKEKAPYEIIIDREKAIARAVEDAANVQGNT 467

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           V+++ GKG ET          +  D   +
Sbjct: 468 VILITGKGAETRQKRGTEYIPVMSDVACV 496


>gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
 gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
          Length = 516

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 131/506 (25%), Positives = 219/506 (43%), Gaps = 37/506 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             + +      P+     ++     D+R ++ G +F+A+ G    G  F P AI++GA+A
Sbjct: 25  IADAVGGTRHGPVG----QVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKA 80

Query: 71  IVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           ++  +A     +  +       + P              A+ L       +  VTGT+GK
Sbjct: 81  VLTDAAGLDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHL------RLWGVTGTNGK 134

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++    ++ +  R G  +  +G     I   +  + +TTP    +    +   +  +  +
Sbjct: 135 TTTTYLLRHLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDL 194

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L   R+D ++     F NL  DH+D+H + + YF  K  LF E        I
Sbjct: 195 VLEVSSHALGLGRVDPLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFTERRSDRQVII 254

Query: 246 IYADDAYSKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              DD + + + ++    G        + G+   +                 + +GK   
Sbjct: 255 --VDDDWGRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTAS 312

Query: 302 FLFPLPGEFQVYNALVAAGLC--------IAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +PG F   N  +A  +           +  D    L        VPGR E +    
Sbjct: 313 VQVLMPGRFNAVNTALAIVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQ- 371

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              R+ VD+AH   +L+ +L+ +R  T+GR+ +VFG  G RD  KRPI+G+IA +LAD  
Sbjct: 372 --PRVIVDFAHNPGALKSLLETLRPSTAGRLRLVFGGTGQRDLEKRPILGRIAGELADFT 429

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +TDD+P  EDP+KIRAE+  G+      ++E   R  AI+ AI+    QD +V+AG+GH
Sbjct: 430 YLTDDDPHEEDPDKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQEAKPQDTVVIAGRGH 489

Query: 470 ETVHIVTNGEKKMSVDCDIIREILGL 495
           ET+     G   +  D    R  L L
Sbjct: 490 ETLQETPVGAIDL-DDRVEARAALQL 514


>gi|332359085|gb|EGJ36906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK49]
          Length = 481

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 112/497 (22%), Positives = 206/497 (41%), Gaps = 32/497 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ +  +F +++     F   +     + +S DSR   A  +F  + G       F+ +
Sbjct: 9   NILKEDHNFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEK 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           A++ G    +  + + +           P+L+V++ ++ +SL A   YG   + +  LA 
Sbjct: 66  AVSAGLRFYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++ A F  QI  ++   +      T+        + LTTP  + L K ++   +
Sbjct: 117 TGTKGKTTTAYFAYQILSQNHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALA 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS    + R+ G+    G F N+  DHI   +     F         L+ 
Sbjct: 177 NDRTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIE--HPTFEDYFYNKRLLMD 234

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+ +   + + V ++  +        G     I  +        +          
Sbjct: 235 NSRAVIVNSGMDHFQIVKEQVVSMEHDFYGAGSSNTIIDSQAFSFEAAGKLA-------- 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +   L G F   NA+ A   C+ +G     +         VPGR E +   + G +I+
Sbjct: 287 GHYDIQLIGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKIF 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDD 418
           VDYAH   SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D
Sbjct: 345 VDYAHNGVSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTAD 404

Query: 419 NPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVT 476
           +P  EDP  I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV 
Sbjct: 405 DPNYEDPLAISEEIASYISYPVDKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVE 464

Query: 477 NGEKKMSVDCDIIREIL 493
             +     D  +  + L
Sbjct: 465 GEKVTYPGDYALAEKYL 481


>gi|218753881|ref|ZP_03532677.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis GM 1503]
          Length = 394

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 117/357 (32%), Positives = 162/357 (45%), Gaps = 12/357 (3%)

Query: 138 QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           + +G  +  IG            + LTTP    L   L+ +  +GV  V +E SSH L  
Sbjct: 28  RAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALAL 87

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   
Sbjct: 88  GRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRA 147

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA 315
           M         V +      +            QQ T          +   LPG + V N 
Sbjct: 148 MAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANC 207

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G+     +  L ++ V PGR E +     G    VDYAH   +L  +L  
Sbjct: 208 LVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTT 265

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G
Sbjct: 266 L-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAG 324

Query: 436 I------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                     +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 325 AAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 380


>gi|327462062|gb|EGF08391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1057]
          Length = 481

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 202/490 (41%), Gaps = 30/490 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F +++     F   +     + +S DSR   A  +F  + G       F+ +A+  G  
Sbjct: 16  NFRDIVKDGEYF-FSYSGLTFDSISYDSREADASTLFF-VKGETFK-KEFLEKAVTAGLR 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             +  + + +           P+L+V++ ++ +SL A   YG   + +  LA TGT GK+
Sbjct: 73  FYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A F  QI  +S   +      T+        + LTTP  + L K ++   + G TH+ 
Sbjct: 124 TTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS    + R+ G+    G F N+  DHI      +          + LL   S A+I
Sbjct: 184 MEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLMDNSRAVI 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                   +++K    +            +          ++     +       +   L
Sbjct: 241 VNSGMDYFQIVKEQVASL-------EHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDIQL 293

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F   NA+ A   C+ +G     +         VPGR E +   + G +++VDYAH  
Sbjct: 294 IGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVFVDYAHNG 351

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDP 425
            SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D+P  EDP
Sbjct: 352 VSLSNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDP 411

Query: 426 EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMS 483
             I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV   +    
Sbjct: 412 LAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKGADAYQIVEGEKVTYP 471

Query: 484 VDCDIIREIL 493
            D  +  + L
Sbjct: 472 GDYTLAEKYL 481


>gi|289754268|ref|ZP_06513646.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289694855|gb|EFD62284.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 373

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 117/357 (32%), Positives = 162/357 (45%), Gaps = 12/357 (3%)

Query: 138 QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           + +G  +  IG            + LTTP    L   L+ +  +GV  V +E SSH L  
Sbjct: 7   RAAGRVAGLIGTIGNRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALAL 66

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   
Sbjct: 67  GRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRA 126

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA 315
           M         V +      +            QQ T          +   LPG + V N 
Sbjct: 127 MAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANC 186

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G+     +  L ++ V PGR E +     G    VDYAH   +L  +L  
Sbjct: 187 LVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTT 244

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G
Sbjct: 245 L-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAG 303

Query: 436 I------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                     +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 304 AAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 359


>gi|269956079|ref|YP_003325868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304760|gb|ACZ30310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 532

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 151/506 (29%), Positives = 228/506 (45%), Gaps = 33/506 (6%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
            L +     R++ +  V+SD+R + AG +FVA+ G +  G  F   A+A+GA A++    
Sbjct: 26  DLRVAGAAGRDQAVTSVASDNRVVAAGDLFVALPGARAHGAQFAADAVARGAAAVLTDDD 85

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQ 134
            +            P+LV    R  L   A+ +YG   E+    AVTGT+GK++    + 
Sbjct: 86  GAALLGDLA----VPVLVSPEPRAILGHVAAWVYGSPAEHLTTFAVTGTNGKTTTTYQLD 141

Query: 135 QICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            + +  G +S  IG            ++LTTP    L   L+ +   GV  +++E SSH 
Sbjct: 142 HLLRALGFTSGLIGTVEMRAGDRVLPSKLTTPEAADLQALLAAMHEDGVRTLAMEVSSHA 201

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L  HR+DG++     FTNL +DH+D+H   Q+YF AK  LF     +    ++       
Sbjct: 202 LALHRVDGVRYGVAGFTNLSQDHLDFHGDMQSYFEAKALLFTPEHARRGVVVVDDAWGLR 261

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                +   A  R +  G    +                   +G+       LPG F V 
Sbjct: 262 MAEAAQVPVATLRTVPDGPAADWTVSDVEPHGTGTAFTVTHKDGRTLRTSTTLPGHFNVA 321

Query: 314 NALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEF----VGTNSRGGRIYVDYAHT 365
           NA +A  + +  G         +        VVPGR E      G  +   R+ VD+AH 
Sbjct: 322 NAALALVMVLEGGAHLTDVAEALAASGGLAGVVPGRMEVIAAGTGAQAALPRVVVDFAHN 381

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           + +LE+ L  +R  T GR++VVFG  GDRD GKRP MG  A++ AD+ +VTDD+P  EDP
Sbjct: 382 TEALELALAALRPTTPGRLVVVFGATGDRDTGKRPAMGAAAVEGADVVVVTDDDPHGEDP 441

Query: 426 EKIRAEIIHGIP-----------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +RAE++ G                      E   R  AIRTAI      D +++AG+G
Sbjct: 442 AAVRAEVLAGARAAAAAAAGTGTADARTVDVREVAPRDLAIRTAIAEAGAGDTVLIAGRG 501

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
           HET+  V   + ++  D    R  L 
Sbjct: 502 HETIQEVAGVDVQL-DDRVEARAALN 526


>gi|125718538|ref|YP_001035671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus sanguinis SK36]
 gi|166224790|sp|A3CPL6|MURE_STRSV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|125498455|gb|ABN45121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
           putative [Streptococcus sanguinis SK36]
          Length = 481

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 114/490 (23%), Positives = 203/490 (41%), Gaps = 30/490 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +F +++     F   +     + +S DSR   A  +F  + G       F+ +A++ G  
Sbjct: 16  NFRDIVKGEEYF-FSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEKAVSVGLR 72

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKS 127
             +  + + +           P+L+V++ ++ +SL A   YG   + +  LA TGT GK+
Sbjct: 73  FYISETDFQV---------GIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKT 123

Query: 128 SVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + A F  QI  +S   +      T+        + LTTP  + L K ++   +   TH+ 
Sbjct: 124 TTAYFTYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLI 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS    + R+ G+    G F N+  DHI      +          + LL   S A+I
Sbjct: 184 MEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYNKRLLMDNSRAVI 240

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                   +++K    +               +K   A   +    ++           L
Sbjct: 241 VNSGMDHFQIVKEQVASLEHDFYGADSSNT--IKDSQAFSFEATGKLAGNYDI-----QL 293

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F   NA+ A   C+ +G     +         VPGR E +   + G +++VDYAH  
Sbjct: 294 IGRFNQENAVAAGLACLRLGASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVFVDYAHNG 351

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDP 425
            SL  +L  +     G+II++ G  G++ + +R   G +     ++  I+T D+P  EDP
Sbjct: 352 VSLRNLLSVVEEHQKGKIILLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDP 411

Query: 426 EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMS 483
             I  EI   I     +  +R EAI+ A+ +   + D +++AGKG +   IV   +    
Sbjct: 412 LAIAEEIASYISYPVEKIADREEAIKKALSLTEREGDAVILAGKGADAYQIVEGEKVAYP 471

Query: 484 VDCDIIREIL 493
            D  +  + L
Sbjct: 472 GDYALAEKYL 481


>gi|291276864|ref|YP_003516636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
 gi|290964058|emb|CBG39898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
          Length = 434

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 122/442 (27%), Positives = 191/442 (43%), Gaps = 40/442 (9%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-------------HPENILAVT 121
               L D S   +S+  +L V+ +R        R  G+              P  I+ +T
Sbjct: 13  KYAFLSDDSREAQSDEAVLFVETSRNAFFAEQMRKEGRDILHYRDLKEYFTFPAQIIGIT 72

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSS 179
           GT+GK++ A+ +  +  ++G     +G           +   LTTP  + L + L+ L  
Sbjct: 73  GTNGKTTTANLIYHVLLKNGKKCAMLGTQGLFFGGKQIKPKGLTTPGILELYEDLALLHE 132

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G   + +E SSH + Q R+ G+   A   TN+  DH+DYH+T  +Y   K         
Sbjct: 133 LGCEVLVMEVSSHAISQDRIFGLDFAAKILTNITSDHLDYHKTLASYIATK--------- 183

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                  +  D   K + K   NA     +    G            +K   T+  +G++
Sbjct: 184 -----NAFLSDGGLKIINKDEENANFSPKNTKSYGVKNPCDLQAKNFDKNHATLQYQGRE 238

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +    PL G   +YN +          G++   +L  L+    V GR E V    +   +
Sbjct: 239 YMLKMPLYGLHNLYNIMACVLCVRELFGLEMEQILSSLQDFGGVSGRMEVV---CQNPMV 295

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+AHT + +E I   ++      + VVFG GGDRD+ KRP+MG +    A    VT D
Sbjct: 296 IVDFAHTHDGIEKI---LQGFLGQSLSVVFGAGGDRDRSKRPLMGGVVRKYAKKIYVTSD 352

Query: 419 NPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPRSEDP  I  +I+ GI      +   +R EAI+ A++     ++L V GKG ET  I+
Sbjct: 353 NPRSEDPMSIIRDILEGIEDREGVVVLPDRYEAIKKALDHQEPGEILFVLGKGDETHQIL 412

Query: 476 TNGEKKMSVDCDIIREILGLIL 497
            +       D  +IRE+L   L
Sbjct: 413 ADRVVD-FDDRMVIRELLSCRL 433


>gi|289762319|ref|ZP_06521697.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
 gi|289709825|gb|EFD73841.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
          Length = 390

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 117/357 (32%), Positives = 162/357 (45%), Gaps = 12/357 (3%)

Query: 138 QRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           + +G  +  IG            + LTTP    L   L+ +  +GV  V +E SSH L  
Sbjct: 24  RAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALAL 83

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      +   +   D  +   
Sbjct: 84  GRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRA 143

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNA 315
           M         V +      +            QQ T          +   LPG + V N 
Sbjct: 144 MAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANC 203

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G+     +  L ++ V PGR E +     G    VDYAH   +L  +L  
Sbjct: 204 LVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTT 261

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G
Sbjct: 262 L-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAG 320

Query: 436 I------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                     +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 321 AAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 376


>gi|78776533|ref|YP_392848.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497073|gb|ABB43613.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 433

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 118/478 (24%), Positives = 205/478 (42%), Gaps = 57/478 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            ++  +     ++ +S+   A   FV    N      ++  A   GA             
Sbjct: 2   KIEIPDEAFRYITENSQECDADTAFVLTPQN----EKYLQNAKDNGA------------- 44

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                     I+ + +         ++L+G     I+ +TGT+GK++ AS +       G
Sbjct: 45  --------HSIINIKDV--------AKLFGIEKIKIVGITGTNGKTTTASAIYSFLLDLG 88

Query: 142 LSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                 G      +    ++  LTTPS +   K +    S+      +E SSH + Q R+
Sbjct: 89  YRVAMQGTRGFFMNDRVIEEKTLTTPSLLNTYKHIYQAVSEKCDFFIMEVSSHAIVQKRV 148

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +G+       TN+ +DH+D+H+T   Y   K   F++   K     +   D        +
Sbjct: 149 EGLNFELKILTNITQDHLDFHKTLGEYIAVKNSFFQDDGRK-----LINKDET------K 197

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           +        + G +    +     +++N     I    +   F   L G F +YN + A 
Sbjct: 198 SSFNFKNTFTYGIENSATYRLIAYSLNNASSGIIQHFSEVVPFTSSLHGFFNLYNLMAAI 257

Query: 320 G-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  G     V   ++    V GR E V  +     + VD+AHT + ++ +L  ++ 
Sbjct: 258 AATHLLSGKKLEEVTAVVDNFAGVSGRMEQVSESPN---VIVDFAHTPDGIQQVLNALKE 314

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                ++VVFG GGDRD+ KRP+MG++A  LA    +T DNPR+EDP+ I  +I+ GI  
Sbjct: 315 ---KELLVVFGAGGDRDRTKRPLMGRVAASLAKKLYITSDNPRTEDPQDIVNDILEGIQD 371

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                 + NR +AI  A+    + +V+V+ GKG ET  I+ + +K    D +++REIL
Sbjct: 372 KSIVQVELNRRKAIENALSEQKENEVVVILGKGDETYQIIYD-QKFPFDDREVVREIL 428


>gi|319955885|ref|YP_004167148.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418289|gb|ADV45399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
          Length = 434

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 114/391 (29%), Positives = 180/391 (46%), Gaps = 23/391 (5%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP 167
           +G     ++ VTGT+GK++  + +  +    G S+   G           ++  +TTPS 
Sbjct: 55  WGLKDMKVIGVTGTNGKTTTTALIYSLLIDLGYSAALQGTRGLFVDDRPIEEKHMTTPSI 114

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           +     +      G  +  +E SSH +DQ R++G+       TN+ RDH+DYH T + Y 
Sbjct: 115 LETLWNMKRAKEAGAEYFVMEVSSHAIDQDRIEGLDFALKVHTNVTRDHLDYHGTLEEYR 174

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K   F +   K            +K+ +K          + G +          ++ N
Sbjct: 175 RVKSLFFSDDSLKLL----------NKDEIKSITFNPKNAYTYGVEEPATFKVLAYSLQN 224

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRF 346
                +    +   F   + G F +YN L A     +      A + + +E    V GR 
Sbjct: 225 GISAVVQFRQEQEAFFSNMMGLFNLYNLLAAIASVKLLTDRPLAEICDVVENFGGVSGRM 284

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V   S    I VD+AHT + +  +L +++      ++VVFG GGDRD+GKRP MG +A
Sbjct: 285 EVV---SAKPTIIVDFAHTDDGMYRVLDSLKD---KDLVVVFGAGGDRDRGKRPRMGAVA 338

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLV 463
              A    VT DNPRSEDPE I AEI+ G+    G     +R EAI  AI+ L + ++L+
Sbjct: 339 GRFAKKIYVTSDNPRSEDPEAIIAEILQGLKGKEGVRAIVDRREAIERAIDELQEDEILL 398

Query: 464 VAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           + GKG E+   +  G K    D +++R+IL 
Sbjct: 399 ILGKGDESTQEIA-GVKHPFDDREVVRQILE 428


>gi|154148328|ref|YP_001405805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
 gi|153804337|gb|ABS51344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
          Length = 429

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 124/471 (26%), Positives = 189/471 (40%), Gaps = 59/471 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             ++ +S   Q G  F      + D +  F   A+  GA+ I +  A  + + +  I   
Sbjct: 8   TFITDNSNECQNGAYF-----MQIDANMKFADSALKNGAKIISIDEAKKMLNINKNI--- 59

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                                      I+ +TGT+GK++ A+ +       G      G 
Sbjct: 60  --------------------------KIVGITGTNGKTTTAAAIYSTLLDLGFKCGLSGT 93

Query: 150 TSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                      +  LTT S       L   S +      +E SSH + Q+R+ G+     
Sbjct: 94  RGAFINDCRIDEKGLTTSSVFKTIGYLYEASKEDCEFFIMEVSSHAIAQNRIQGLNFALK 153

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL +DH+DYH+T + Y   K   F++  P               +            
Sbjct: 154 IFTNLTQDHLDYHKTMEEYARVKSSFFKDDTP-----------KLINKDAGGITYNETNA 202

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIG 326
            +   +    +     ++       +     +     PL GEF +YN + A     I   
Sbjct: 203 RTYALKQIATYSVLAYSVKGAIDALLRTPDGEIQIESPLVGEFNLYNLMAAFAAVKILTN 262

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D+  + E L     V GR + V   SR   + VD+AHT + +E +L  ++      +I 
Sbjct: 263 YDNKKIAEALANFGGVEGRVQIV---SRNPYVVVDFAHTPDGIEKVLNALKDHE---LIA 316

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKG 443
           VFG GGDRD+ KRP MG I    A  AI+T DNPRSEDP  I  EI  G+      I+  
Sbjct: 317 VFGAGGDRDKTKRPKMGAIVEHFAKTAIITSDNPRSEDPNVIIDEIESGMREKNKIIKIE 376

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           NR EAI+ AI +    +++V+ GKG ET   +  G K    D + + EIL 
Sbjct: 377 NRAEAIKKAISLAKNGEMVVILGKGDETYQEIK-GVKHHFNDKECVLEILN 426


>gi|116490935|ref|YP_810479.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
 gi|116091660|gb|ABJ56814.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
          Length = 499

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 122/510 (23%), Positives = 220/510 (43%), Gaps = 28/510 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHI-QAGWIFVAIVGNKEDGH 57
           M+ +D   +   E +N+  I   +  E +   +++  DSR + +   +FV + G  +   
Sbjct: 1   MR-EDFTNEIVTESLNEAGILVEKPSEIRRHFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            ++  ++      IV S              N P  +V N++  L++ ++  +G   +  
Sbjct: 57  EYLTASLLDKISGIVTSRK------EKINIPNLPHWIVSNSQIALAVLSAEFFGHPEKKL 110

Query: 117 -ILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAK 172
            IL +TGT GK+S       +  + +   +       T        +  LTTP    L  
Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFS 170

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +      G  ++ +E SS    ++R+ GI    G+F N+  DHI     +   F   + 
Sbjct: 171 NMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGI--NEHPTFADYLA 228

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-V 291
             + L       +   DDA+ +E +  A + G + +SV    K      +      +   
Sbjct: 229 HKKMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLDESIF 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L + PGR   + T
Sbjct: 289 YLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI-PGRMVKIKT 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            S G  I VDYAH   ++  +L  ++     G+II+V G  GD+ + +R   G++     
Sbjct: 348 KSHGL-IIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRSQFGEVISKFV 406

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  N  D++V+A 
Sbjct: 407 DVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKANINDLVVLAA 466

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           KG +      + +     D  +  E L  I
Sbjct: 467 KGEDAFQKTNHVDVPYLGDKKVAEEFLAEI 496


>gi|290890409|ref|ZP_06553484.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
 gi|290479805|gb|EFD88454.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
          Length = 499

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 121/507 (23%), Positives = 219/507 (43%), Gaps = 28/507 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHI-QAGWIFVAIVGNKEDGH 57
           M+ +D   +   E +N+  I   +  E +   +++  DSR + +   +FV + G  +   
Sbjct: 1   MR-EDFTNEIVTESLNEAGILVEKPSEIRRHFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            ++  ++      IV S              N P  +V N++  L++ ++  +G   +  
Sbjct: 57  EYLTASLLDKISGIVTSRK------EKINIPNLPHWIVSNSQIALAVLSAEFFGHPEKKL 110

Query: 117 -ILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAK 172
            IL +TGT GK+S       +  + +   +       T        +  LTTP    L  
Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFS 170

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +      G  ++ +E SS    ++R+ GI    G+F N+  DHI     +   F   + 
Sbjct: 171 NMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGI--NEHPTFADYLA 228

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-V 291
             + L       +   DDA+ +E +  A + G + +SV    K      +      +   
Sbjct: 229 HKKMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLDESIF 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L + PGR   + T
Sbjct: 289 YLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI-PGRMVKIKT 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            S G  I VDYAH   ++  +L  ++     G+II+V G  GD+ + +R   G++     
Sbjct: 348 KSHGL-IIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGKDRRSQFGEVISKFV 406

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  N  D++V+A 
Sbjct: 407 DVAYLTTDDPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKANINDLVVLAA 466

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREIL 493
           KG +      + +     D  +  E L
Sbjct: 467 KGEDAFQKTNHVDVPYLGDKKVAEEFL 493


>gi|330718777|ref|ZP_08313377.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc fallax KCTC
           3537]
          Length = 469

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 97/482 (20%), Positives = 177/482 (36%), Gaps = 37/482 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  D+R ++   +FV + GN      ++  A+  G   IV +    +         + P 
Sbjct: 1   MHYDTRQVKPNTLFV-VKGNFN--PKYLENAV--GITGIVTTKPLDI---------DIPQ 46

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-------SF 145
            +V NT++ LSL ++  + +  + +     T  K    +           +       S 
Sbjct: 47  WIVSNTQQALSLLSAEFFDRPQDKLWIGAITGTKGKTTTAYFAYYILKHATQNRTALFST 106

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               T   +S  + + LTTP    L K +      G+TH+ +E SS    + R+ G+   
Sbjct: 107 VDRITGPQASDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKDRVYGLHFD 166

Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            G+F N+  DH   + H T + Y   K+ L +              D       +     
Sbjct: 167 VGTFLNISPDHIGPNEHPTFEDYLAHKLMLLDHSDTIVINDETDHHDEIFSHAKQNHEAG 226

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQ--------QVTISVEGKDFDFLFPLPGEFQVYNA 315
                    +        +               Q  +    +               + 
Sbjct: 227 KSLYTYSSNRQNQGDYVFISNDSAIHESHFTVSEQHKVEQLSEIIGHYRLNIPGDFNESN 286

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LK 374
            +AA +           +        +PGR   +   S G   +VDYAH   S+  +   
Sbjct: 287 ALAALMIAGFAGAKHQDMVQGLDEVFIPGRMLSMPIPSHGV-AFVDYAHNYASMHALLSF 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                 +G++IVV G  G++   +R   GK+  +LAD+  +T D+P+ EDP  I  EI  
Sbjct: 346 AQSKYPTGKVIVVVGSPGNKGVSRRADFGKVIGELADVVFLTADDPQYEDPADIANEIAC 405

Query: 435 GIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIR 490
            I         + +RI+AI  AI    +QD+++VAGKG +    +   +     D  +++
Sbjct: 406 HINNDHVVVHFEMDRIKAIHAAIASAGEQDIVIVAGKGEDPYQKINGQDVPYIGDYAVVK 465

Query: 491 EI 492
           ++
Sbjct: 466 QL 467


>gi|254458836|ref|ZP_05072260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
 gi|207084602|gb|EDZ61890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
          Length = 431

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 117/480 (24%), Positives = 208/480 (43%), Gaps = 57/480 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            ++   ++   VS +S    A   FV +    +    ++  A   GA             
Sbjct: 2   KIELPNQEYKYVSENSSECGADTAFV-LSAQNK---KYLQDAKDNGA------------- 44

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                     I+ + +         + L+G     I+ +TGT+GK++ AS +       G
Sbjct: 45  --------HSIINIKDI--------AELFGIDKIKIVGITGTNGKTTTASAIYSFLLDLG 88

Query: 142 LSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +   G      +    +   LTTPS +   K +      G     +E SSH + Q R+
Sbjct: 89  YKTAMQGTRGFFMNDEVIEGKSLTTPSVLNTYKHIYQAVESGCEFFIMEVSSHAIAQERI 148

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +G+K      TN+ +DH+DYH+T        + +       E   +I  D+  S   +K 
Sbjct: 149 EGLKFELKILTNITQDHLDYHKT----IGEYIAVKNSFFQDEGKKLINKDEPRSAFNIK- 203

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    + G +    +     +++N     I    +   F   L G F +YN + A 
Sbjct: 204 ------NTFTYGIENPASYKLMAYSLNNASSGIIQHFKEVVPFTSSLHGFFNLYNLMAAI 257

Query: 320 -GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + + +      ++E ++    V GR E V        + VD+AHT + ++ +L  ++ 
Sbjct: 258 GAVDLLVDEKLEKIVEVVDNFAGVSGRMEQV---CELPNVIVDFAHTPDGMQQVLNALKE 314

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
                ++VVFG GGDRD+ KRP+MG++A  LA    +T DNPR+EDP+ I  +I+ GI  
Sbjct: 315 ---KELLVVFGAGGDRDKQKRPLMGRVAASLAKKVYITSDNPRNEDPQAIVDDILEGIED 371

Query: 439 ---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
                 + NR +AI  A++   + +V+V+ GKG E   I+ + ++    D +++RE+L +
Sbjct: 372 RSIVSVELNRKKAIEMALDDQGEGEVVVILGKGDEAFQIIYD-KQFPFDDREVVRELLNI 430


>gi|118586530|ref|ZP_01543973.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
 gi|118433034|gb|EAV39757.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
          Length = 499

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 122/510 (23%), Positives = 219/510 (42%), Gaps = 28/510 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHI-QAGWIFVAIVGNKEDGH 57
           M+ +D   +   E +N+  I   +  E K   +++  DSR + +   +FV + G  +   
Sbjct: 1   MR-EDFTNEIVTESLNEAGILVEKPSEIKRRFDDLQFDSRKVTKKNTLFV-VKGAFK--I 56

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN- 116
            ++  ++      IV S              N P  +V N++  L++ ++  +    +  
Sbjct: 57  EYLTASLLDKISGIVTSR------TEKIDLPNLPHWIVSNSQIALAVLSAEFFVHPEKKL 110

Query: 117 -ILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAK 172
            IL +TGT GK+S       +  + +   +       T        +  LTTP    L  
Sbjct: 111 KILGITGTKGKTSSTYMAYSLLDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFS 170

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +      G  ++ +E SS    ++R+ GI    G+F N+  DHI     +   F   + 
Sbjct: 171 NMKKALDNGNKYLVMEVSSQSYLKNRVFGIHFKVGAFLNISPDHIGI--NEHPTFADYLA 228

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-V 291
             + L       +   DDA+ +E +  A + G + +SV    K      +      +   
Sbjct: 229 HKKMLAENSDVFVSNIDDAHGQEFIDHAKSFGAKTVSVSENKKADVNFHIKKADLDESVF 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ +G   +FL  +PG F +YNA VA  +   +G       + L +L + PGR   + T
Sbjct: 289 YLTEKGNSQEFLLDIPGVFNIYNASVAIAMVREMGFKPEKAKKALAELQI-PGRMVKIKT 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            S G  I VDYAH   ++  +L  ++     G+II+V G  GD+ + +R   G++     
Sbjct: 348 KSHGL-IIVDYAHNGQAVTTLLTFLKSQHQGGKIIIVLGSPGDKGEDRRSQFGEVISKFV 406

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+A +T D+P +EDP +I  +I   I        E+ +R +AI+ AI+  N  D++V+A 
Sbjct: 407 DVAYLTTDDPGTEDPHQINNQIRKAISNPDVELHEELDRSKAIQAAIKKANTNDLVVLAA 466

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           KG +      + +     D  +  E L  I
Sbjct: 467 KGEDAFQKTNHVDVPYLGDKRVAEEFLAEI 496


>gi|86152832|ref|ZP_01071037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843717|gb|EAQ60927.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 427

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 202/467 (43%), Gaps = 59/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ ++   +    F  +   +     F  QA+ +GA+ I      +       I     I
Sbjct: 10  ITDNTLECEKECFF--LQTTQN--AKFQAQALEKGAKII----DVNECKKLLKIDEKIQI 61

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +                          +TGT+GK++ A+ +  I    G      G    
Sbjct: 62  I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96

Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +  LTT   +   + L   + +      +E SSH L Q+R++G+K +A  FT
Sbjct: 97  FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H T + Y  AK   F +               +  +             + 
Sbjct: 157 NITQDHLDFHGTFENYKEAKELFFTDESL-----------KFINKDALAIKFNVRNAFTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329
           G +   ++  K  ++       ++ + + F    PL G F +YN LVA+      +  D 
Sbjct: 206 GIENPALYQIKAYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + + +   V GR E V        + VD+AHT + +E +L  ++     ++IVVFG
Sbjct: 266 KDLEKAISEFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
            GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R 
Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRK 377

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI+ A+E+    D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|325275017|ref|ZP_08141010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
 gi|324099845|gb|EGB97698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
          Length = 419

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 131/419 (31%), Positives = 201/419 (47%), Gaps = 18/419 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
             +F    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+         + AY
Sbjct: 6   SKLFAHASRDPMIRELTLDSRNVRPGDLFLAVPGAKVDGRGHIADAL----ARGAAAVAY 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
             Q  +    ++ P++ V      LS  A R YG+    +  + VTGT+GK+SV   + Q
Sbjct: 62  EEQGANVLPLTDVPLIPVKGLIAQLSDIAGRFYGEPSRQLDLVGVTGTNGKTSVTQLLAQ 121

Query: 136 ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
             +  G     IG   T      Q  RLTTP PI +   L  L   G   V++E SSH L
Sbjct: 122 ALELLGKRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLYGLKKAGAKAVAMEVSSHAL 181

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +Q R+  +       TNL RDH+DYH + QAY  AK +LF     +     +  DD + +
Sbjct: 182 EQGRVAALAFDIAVMTNLSRDHLDYHGSMQAYEAAKAKLFAWPSLRCQVVNL--DDEFGR 239

Query: 255 EVMKRAHNAGCRVLSVG--------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            + +   +                  +   +   K     +  + T+     +      L
Sbjct: 240 RLAQAFADRAPADPIESRLLSYSLENRDADLFCTKAAFDDHGVRATLVTAQGERILRSQL 299

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G F + N L A    +A+      +L  + KL    GR + +G  ++   + VDYAHT 
Sbjct: 300 LGRFNLSNMLAAVATLLAMDFALDEILSVIPKLQGPVGRMQRLGGGAKPL-VVVDYAHTP 358

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++LE +L+ +R    G+++ +FGCGGDRD+GKRP+M ++A  LAD  +VTDDNPRSEDP
Sbjct: 359 DALEKVLEALRPHAHGQLLCLFGCGGDRDRGKRPLMAEVAERLADRVLVTDDNPRSEDP 417


>gi|295398699|ref|ZP_06808721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
 gi|294973052|gb|EFG48857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
          Length = 514

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 113/516 (21%), Positives = 202/516 (39%), Gaps = 38/516 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL   I                   E  IN ++ DSR + A  +FV   G       ++
Sbjct: 5   MKLSRAIAFFKDNGSATTITQENVADEVIINRITFDSRAVTANTLFVC-KGLNFK-ASYL 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA A +    Y+          + P ++V++ R  ++  A+  Y + P   +A+
Sbjct: 63  KDAVDRGAVAYLSEQDYAA---------DIPGIIVEDIRLAMAQLANFFY-QSPWQDVAI 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG---------PTSTISSFAQDNRLTTPSPIYLA 171
           +G +G     +    + Q   L S + G           +        + LTTP  + L 
Sbjct: 113 SGITGTKGKTTTAGFVNQILTLDSQEKGQPLPGFVSSTFNYDGLEKTPSTLTTPEAMDLY 172

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           + L+ +   GV   ++E SS  L  HR D +K+   +F N+  DHI   +          
Sbjct: 173 EMLATMRDNGVKRATMEVSSQALKYHRADDVKMEVVAFLNISPDHISPVEHPTFADY--F 230

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKR----AHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +    +      A+I  D  + +E++K      +      +S           ++     
Sbjct: 231 QSKLRIFDHGKVAVINEDTDHYEEILKAAEDAENIQRIVTVSRKNPAADYFADELAFSET 290

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           KQ   +  +G++      + G F + NALVAA +     ++ A + + L       GR E
Sbjct: 291 KQTFVVKNQGEEIPMALNVLGHFNINNALVAAAIARENDVEWATIQKALGDAKTD-GRME 349

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIA 406
              +        VD+AH   S E +  +++ +     I +VFG  G + + +R  MG++A
Sbjct: 350 IYRSTDNQLTFVVDFAHNKISFEELFSSVKEMAPDNDIRIVFGSAGGKAENRRADMGRVA 409

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEML---N 457
               +   +T D+P  ED  KI AEI   I             +R  +I  A +      
Sbjct: 410 GLNTNEIYLTSDDPNFEDSYKIMAEIEEAINEVNPDAKVRSNLDRTGSIYMAYKDAIASG 469

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           K   +VVAGKG E    +    +    D + +++++
Sbjct: 470 KPTTIVVAGKGSEDTIKINGRNEFYVPDFEYVQQLI 505


>gi|305432459|ref|ZP_07401621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
 gi|304444498|gb|EFM37149.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
          Length = 427

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 118/467 (25%), Positives = 198/467 (42%), Gaps = 59/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ ++   +    F  +   +     F   A+ +GA+ I              I  N  I
Sbjct: 10  ITDNTLECEKDCYF--LKTAQN--MNFASDALEKGAKII----DVEECKKLLKIDENIKI 61

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +                          +TGT+GK++ A+ +  I    G      G    
Sbjct: 62  I-------------------------GITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGA 96

Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +  LTT   +   + L   + +      +E SSH L Q+R++G+K  A  FT
Sbjct: 97  FINDEQIDEKSLTTSPILKTLEYLQLATQKKCDFFIMEVSSHALVQNRIEGLKFAAKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H   + Y  AK   F +               +  +             + 
Sbjct: 157 NITQDHLDFHGNFENYKAAKELFFTDESL-----------KFINKDTLMIKFNVRNAFTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329
           G +   ++  K  ++ +     ++++ + F    PL G F +YN L A+      +  + 
Sbjct: 206 GIENPSLYQVKAYSLEDGISAIVALKDQSFHIDSPLLGLFNLYNLLAASACVNELVKPNL 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +     V GR E V        + VD+AHT + +E +L  ++     ++IVVFG
Sbjct: 266 KDLEKAISGFGGVCGRVEQVANG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
            GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R 
Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKDIMNEILSGFQNPDKALMIEDRK 377

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI  A+++  K D++V+ GKG E    +  G K    D  I+ EIL
Sbjct: 378 EAINKALKLKEKDDLVVILGKGDENTQEIK-GIKHPFSDKAIVNEIL 423


>gi|325568267|ref|ZP_08144634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158036|gb|EGC70189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 506

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 100/499 (20%), Positives = 189/499 (37%), Gaps = 23/499 (4%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+ + K+     + +   P +  +     +S DSR   A  +F    G       ++  
Sbjct: 16  LQENLLKEIITPTDWVYTVPQEMTDIAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAA 73

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI QG +  +  + Y               ++V + R+ +++ A   YG   E ++ +  
Sbjct: 74  AIDQGIQCYISETPYDNFATYG--------IIVTDIRETMAVIAQAFYGNPQEQLVTIGI 125

Query: 123 TSGKSSVASFVQQICQR---SGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           T  K   +            +G           S       +  LTTP  + L K ++  
Sbjct: 126 TGTKGKTSCAYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEA 185

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ GI    G+F N+  DHI   +     ++  +    EL
Sbjct: 186 VANGMTHLVMEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVE--HPTYDDYLYCKREL 243

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +      I+     +   + +         ++ G       +++   + +      S   
Sbjct: 244 IRNSKQMILNRQSDHYHLLRETCEVHQVPYITYGRSDADYVVQEGMDLKSFALTAASDVL 303

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +              +    AA L   +   S    + +    ++PGR   V     G  
Sbjct: 304 QVSGEYQLGILGSFNHENAAAAILAACLAGASREDAQKVLPTVIIPGRM-IVLEKENGAV 362

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + VDYAH   S + + +  R +   GR++ V G  G + Q +R  MG+   + AD   +T
Sbjct: 363 MIVDYAHNYLSFQSLSELARQLRPDGRLLFVTGSAGGKAQSRRADMGRALGEYADKVYLT 422

Query: 417 DDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            D+P  E+   I  EI   I       I + +R +A++ AI   + +D++++AGKG E  
Sbjct: 423 SDDPDFEEAAAIAKEIADAITNPEVAIIHEMDRAQAVKLAIAEADGRDIVIIAGKGAEQY 482

Query: 473 HIVTNGEKKMSVDCDIIRE 491
             V   +     D  + ++
Sbjct: 483 LKVAGKKVPYIGDLTLAQQ 501


>gi|157164782|ref|YP_001467685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter concisus 13826]
 gi|112800816|gb|EAT98160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter
           concisus 13826]
          Length = 427

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 195/467 (41%), Gaps = 57/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DS   + G  FV           F+  A   GA+ I +     L      +      
Sbjct: 10  ITDDSNECEQGAYFV----QTTANAKFVEHAAKNGAKIITLEECKKLLKIDENL------ 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                                   I+ +TGT+GK++ A+ + +  +  G      G    
Sbjct: 60  -----------------------KIVGITGTNGKTTTAAAIYETLRNLGKKCGLSGTRGA 96

Query: 153 I--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   D  LTT + +     L   S QG  +  +E SSH + Q R++ +      FT
Sbjct: 97  FIEGEQIDDKALTTSAILKTLSYLKAASEQGCEYFVMEVSSHAIAQKRIESLNFALKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL +DH+DYH++ +       R+       ES  +I  DD   K   K A+    +    
Sbjct: 157 NLTQDHLDYHKSME----EYARVKSSFFDDESVKLINIDDGGVKFNPKNAYTYAIK---- 208

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDS 329
                      V  + +     I     D +    L GEF +YN + A   +C+    D+
Sbjct: 209 ---KPASFAPIVYGLKDGIDAVIKTPNGDVEIDSSLQGEFNLYNLIAALGAVCLLERPDA 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A + + + K   V GR E V   S    + VD+AHT + +E +L ++R +    +I VFG
Sbjct: 266 AALSKAISKFKGVSGRMEVV---STDPLVIVDFAHTPDGIEKVLNSLRHL---NLIAVFG 319

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRI 446
            GGDRD+ KRP MG IA   A I IVT DNPRSE+PE I  EI  G+      I   NR 
Sbjct: 320 AGGDRDRTKRPKMGAIAQKYARICIVTSDNPRSEEPESIIDEICAGMSQNENLIRNANRK 379

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI  AI  L     LV+ GKG E    +  G K    D +++ E+L
Sbjct: 380 EAIALAISKLEPGWALVILGKGDEPYQEIK-GVKHPFSDKEVVIELL 425


>gi|57168799|ref|ZP_00367930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
 gi|57019846|gb|EAL56529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
          Length = 427

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 198/467 (42%), Gaps = 59/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ ++   +    F  +   +     F   A+ +GA+ I              I  N  I
Sbjct: 10  ITDNTLECEKDCYF--LKTAQN--MNFASDALEKGAKII----DVEECKKLLKIDENIKI 61

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +                          +TGT+GK++ A+ +  I    G      G    
Sbjct: 62  I-------------------------GITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGA 96

Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +  LTT   +   + L   + +      +E SSH L Q+R++G+K  A  FT
Sbjct: 97  FINDEQIDEKSLTTSPILKTLEYLQLATQKKCDFFIMEVSSHALVQNRIEGLKFAAKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H   + Y  AK   F +               +  +             + 
Sbjct: 157 NITQDHLDFHGNFENYKAAKELFFTDESL-----------KFINKDTLMIKFNVRNAFTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329
           G +   ++  K  ++ +     ++++ + F    PL G F +YN L A+      +  + 
Sbjct: 206 GIENPSLYQVKAYSLEDGISAIVALKDQSFHIDSPLLGLFNLYNLLAASACVNELVKPNL 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +     V GR E V        I VD+AHT + +E +L  ++     ++IVVFG
Sbjct: 266 KDLEKAISGFGGVCGRVEQVANG-----IIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
            GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R 
Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKDIMNEILSGFQNPDKALMIEDRK 377

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI  A+++  K D++V+ GKG E    +  G K    D  I+ EIL
Sbjct: 378 EAINKALKLKEKDDLVVILGKGDENTQEIK-GIKHPFSDKAIVNEIL 423


>gi|237752986|ref|ZP_04583466.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375253|gb|EEO25344.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 446

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/492 (25%), Positives = 202/492 (41%), Gaps = 67/492 (13%)

Query: 20  IFPMQWRERKINEVSSDSRHI------QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
                +    I  +S DSR +           F+    NK     ++  A   G E  + 
Sbjct: 4   NLDSNFSNSHIRFISDDSREVLSNECNAKNCAFLITKSNKC----YLKNAKENGFEIFIT 59

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                                  + ++FL              I+A+TGT+GK++ A+ +
Sbjct: 60  PQ---------------------DLKQFL---------DLNLKIIAITGTNGKTTTAAMI 89

Query: 134 QQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             I    G     +G           ++  LTTPS + +  A++    +  T+  +E SS
Sbjct: 90  YSILLDLGYKVALLGTRGFFINGVKKREKGLTTPSLLEIYSAITEARKENCTYFVMEVSS 149

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H + Q R++G++      TN+  DH+DYH+T + Y           L      +I  D+ 
Sbjct: 150 HAIVQERIEGLEFTLKILTNITSDHLDYHKTLENY---IATKNSFFLSPLDLKLINKDEP 206

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            ++  +++A   G    +      +     + A        I+   ++      L G+  
Sbjct: 207 NARYALQKAITYGIESPATFQVRAYSLKDGITAQ-------IAYGKEESSLQCSLFGKHN 259

Query: 312 VYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           +YNAL A   + +        + E LE    V GR + V   S+   I VD+AHT + +E
Sbjct: 260 LYNALAAISAVKLLENEPLQEICEKLENFGGVLGRMQVV---SQNPLIIVDFAHTEDGME 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            I ++       +I VVFG GGDRD+ KRP MG  A   A    +T DNPRSE P  I  
Sbjct: 317 KIFQS---FPHRKIAVVFGAGGDRDKTKRPKMGLCAAKYAQKIYITSDNPRSEIPSAIIQ 373

Query: 431 EIIHGIPGFIE-------KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           EI +GIP  +        + NR +AI  AI  L   +VL++ GKG ET  I+ +      
Sbjct: 374 EIFNGIPQTLREKLEIYLEENRAKAINMAISALKSDEVLLILGKGDETYQIIGDST-LHF 432

Query: 484 VDCDIIREILGL 495
            D +  ++ L L
Sbjct: 433 DDTEEAQKALAL 444


>gi|28572693|ref|NP_789473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Tropheryma whipplei TW08/27]
 gi|46577004|sp|Q83HJ9|MURE_TROW8 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|28410825|emb|CAD67211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei TW08/27]
          Length = 509

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 127/506 (25%), Positives = 221/506 (43%), Gaps = 24/506 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DLI +    L +  +    Q+ +R ++ ++  ++ ++   IFVA  G    G  F+ 
Sbjct: 9   RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           Q  +    A++  +       S  + + +TPILV D+ R  L + A R+Y      I  +
Sbjct: 65  QVQS--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK+S      ++ +  G+S        + +S +    LTTP    L   +      
Sbjct: 123 TGTNGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSC-LTTPELCQLYARIFTAKQA 181

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                ++EASSH +++ RL  I L   +FTNL  +H++ H+  +AY+ AK  LF     +
Sbjct: 182 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN--KR 239

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296
            + A+I  D  Y   + K    +   +            F          +     IS  
Sbjct: 240 SNSAVINIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPS 299

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTN 352
           G   +    L G+    N  +A  +   +GID   +   L K      V+PGR E   T 
Sbjct: 300 GYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTG 359

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    + VD+ HT +++E  L   ++IT GR+I +    G RD  KR  +G++    +D 
Sbjct: 360 NSPR-VIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 418

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +TD + R E+P +IR  I+ G+        +  +  +A+  AI++    D ++ +G G
Sbjct: 419 LFITDGHSRFENPAEIRRMILDGVEGPRKQVEQIPSMTQAVLAAIDIAKSDDTVLCSGFG 478

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            +    V  G+K      D +R  L 
Sbjct: 479 DDPYLDVL-GKKIPYSLRDEVRRGLE 503


>gi|50955154|ref|YP_062442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648714|sp|Q6AE59|MURE_LEIXX RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|50951636|gb|AAT89337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 514

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 126/499 (25%), Positives = 215/499 (43%), Gaps = 23/499 (4%)

Query: 11  FPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             +L+    +      +  ++   +  S  ++ G ++V + G    G  +   A   GA 
Sbjct: 19  LAQLVALFGLDVRGDLDGVEVTGAALASSAVEPGDLYVGVPGRNAHGAAYAAAAAEAGAV 78

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKS 127
           A++               +  PI+V  + R  L   A+ ++    +   +  VTGT+GK+
Sbjct: 79  AVLT----DGDGADLAAAAGLPIVVTADPRAALGAVAAWIHRTEDNAATLFGVTGTNGKT 134

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           SV   +  I  + G+ +             A  + LTTP    L   L+ +  +GV   +
Sbjct: 135 SVVYLLYAILGQLGIVAGLTSTAERRIGEHAITSTLTTPEATELHALLARMREEGVRAAA 194

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E S+  L +HR+DGI+     FTNL  DH+D +     YF AK+ LF+    +     +
Sbjct: 195 IEVSAQALSRHRVDGIEFDVAGFTNLSHDHLDDYTAMPDYFAAKLELFQPDRARRGVVTV 254

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
            +   +   +++++      + SV        +  +     +    +   G    +   P
Sbjct: 255 DS--EWGHRLVEQSRIPVTTLSSVAGSEADWRVTVLEETLARTAFALEGPGGRLLETSVP 312

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALV----LEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           L G +   NA +A  + +  G D   +             +PGR E + +  RG  +++D
Sbjct: 313 LLGAYNASNAALAIVMLVESGYDLDAIGAALERDGGIDAYIPGRAERL-SGDRGPVVFID 371

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y HT ++    L  +R +T+GRI++VFG  GDRD  KR  MG IA   AD  ++TD +PR
Sbjct: 372 YGHTPDAFSSTLAALRRVTAGRIVMVFGADGDRDITKRAEMGAIAARGADAVVITDFHPR 431

Query: 422 SEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            EDP  IRA ++ G    +      E  +   A RTA+ +  + DV++ AG GHE     
Sbjct: 432 WEDPATIRAALLEGARNAVPERDLYEVPDPRTAFRTALSLAGEGDVVLYAGPGHEDYQE- 490

Query: 476 TNGEKKMSVDCDIIREILG 494
             GE+      D  R  L 
Sbjct: 491 AAGERIPYSARDDARLALR 509


>gi|283957027|ref|ZP_06374499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791528|gb|EFC30325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 427

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 197/467 (42%), Gaps = 59/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ ++   +    F  +   +     F  QA+ +GA+ I      +       I     I
Sbjct: 10  ITDNTLECEKECFF--LQTTQN--AKFHAQALEKGAKII----DVNECKKLLKIDEKIQI 61

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +                          +TGT+GK++ A+ +  I    G      G    
Sbjct: 62  I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96

Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +  LTT   +   + L   + +      +E SSH L Q+R++G+   A  FT
Sbjct: 97  FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H T + Y  AK                     +  +             + 
Sbjct: 157 NITQDHLDFHGTFENYKEAKELF-----------FTDESLKFINKDALAIKFNVRNAFTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329
           G +   ++  K  ++       ++ + + F    PL G F +YN LVA+      +  D 
Sbjct: 206 GIENPALYQIKAYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +     V GR E V        + VD+AHT + +E +L  ++     ++IVVFG
Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
            GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R 
Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLTIEDRK 377

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI+ A+E+    D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
 gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
          Length = 485

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 111/462 (24%), Positives = 182/462 (39%), Gaps = 27/462 (5%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + +  ++S DSR   A  +F    G       ++  AI QG +  V    Y        
Sbjct: 33  EKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQPYENSAVG-- 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLS 143
                  ++V + RK ++L A   Y        ++  TGT GK++ A F + I   +   
Sbjct: 89  -------IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILDHTTNK 141

Query: 144 SF---QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                    T+        + LTTP  + L + +S     G+TH+ +E SS      R+ 
Sbjct: 142 KTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEVSSQAYKTQRVY 201

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+ L  G F N+  DHI   +     F+       +L+      ++  +  Y   + + A
Sbjct: 202 GLTLDVGIFLNISPDHISPIE--HPTFDDYFYCKRQLILNSKTVVLNHESDYFDLLRETA 259

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL---PGEFQVYNALV 317
                  ++ G   +  +               S E +                      
Sbjct: 260 DLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLAGGFNQENAA 319

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNI 376
           +A +  A+   S+   +   K   VPGR + +  ++ G  +YVDYAH   SL+ +     
Sbjct: 320 SAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSN-GAHVYVDYAHNYLSLKTLLEFAK 378

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
                GR+IVV G  G++   +R   GK+  + ADIA +T D+P  EDP+KI  EI   I
Sbjct: 379 NEHPDGRVIVVLGSPGNKAISRRHDFGKVLSETADIAFLTADDPAFEDPKKIAEEINEAI 438

Query: 437 PG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                    + +R EAIR A+     QD +V+AGKG +    
Sbjct: 439 TNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKGVDPYQK 480


>gi|46577003|sp|Q83GN3|MURE_TROWT RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
          Length = 509

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 128/506 (25%), Positives = 222/506 (43%), Gaps = 24/506 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DLI +    L +  +    Q+ +R ++ ++  ++ ++   IFVA  G    G  F+ 
Sbjct: 9   RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           Q  +    A++  +       S  + + +TPILV D+ R  L + A R+Y      I  +
Sbjct: 65  QVQS--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK+S      ++ +  G+S        + +S +    LTTP    L   +      
Sbjct: 123 TGTNGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSC-LTTPELCQLYARIFTAKQA 181

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                ++EASSH +++ RL  I L   +FTNL  +H++ H+  +AY+ AK  LF     +
Sbjct: 182 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN--KR 239

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296
            + A+I  D  Y   + K    +   +            F          +     IS  
Sbjct: 240 SNSAVINIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPS 299

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTN 352
           G   +    L G+    N  +A  +   +GID   +   L K      V+PGR E   T 
Sbjct: 300 GYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTG 359

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    + VD+ HT +++E  L   ++IT GR+I +    G RD  KR  +G++    +D 
Sbjct: 360 NSPR-VIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 418

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +TD + R E+P +IR  I+ G+ G      +  +  +A+  AI++    D ++ +G G
Sbjct: 419 LFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSGFG 478

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            +    V  G+K      D +R  L 
Sbjct: 479 DDPYLDVL-GKKIPYSLRDEVRRGLE 503


>gi|218563230|ref|YP_002345010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|9297095|sp|O69290|MURE_CAMJE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112360937|emb|CAL35738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926835|gb|ADC29187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315929485|gb|EFV08681.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 427

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 197/467 (42%), Gaps = 59/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ ++   +    F  +   +     F  QA+ +GA+ I      +       I     I
Sbjct: 10  ITDNTLECEKECFF--LQTTQN--AKFHAQALEKGAKII----DVNECKKLLKIDEKIQI 61

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +                          +TGT+GK++ A+ +  I    G      G    
Sbjct: 62  I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96

Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +  LTT   +   + L   + +      +E SSH L Q+R++G+   A  FT
Sbjct: 97  FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H T + Y  AK                     +  +             + 
Sbjct: 157 NITQDHLDFHGTFENYKEAKELF-----------FTDESLKFINKDALAIKFNVRNAFTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329
           G +   ++  K  ++       ++ + + F    PL G F +YN LVA+      +  D 
Sbjct: 206 GIENPALYQIKAYSLEEGISTIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +     V GR E V        + VD+AHT + +E +L  ++     ++IVVFG
Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
            GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R 
Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRK 377

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI+ A+E+    D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 641

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 135/545 (24%), Positives = 217/545 (39%), Gaps = 83/545 (15%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQDFSATIR 87
           ++N VS DSR ++ G +FVA+ G K DGH +  QA+AQGA A+V+ +    L +   T  
Sbjct: 40  QVNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVLENLPPELIEADQTDL 99

Query: 88  SNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            +  +++V +T   L+     +YG      N+  +TGT GK++  + +  +  +    + 
Sbjct: 100 LSRGVIIVPSTAAVLTPLCREIYGTATITRNLHGITGTDGKTTTTAMITWLLNKVDYPAG 159

Query: 146 QIGPTSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            IG         ++     TTP    L + L+ L + G   V +E SS    QHR+D + 
Sbjct: 160 SIGTLGAKLPDGRNLPTAYTTPPAPELHRLLAQLQTNGARAVCMEVSSQAAVQHRVDALA 219

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +FTN   DH+DYH T + Y  AK  LF   L K + A++ ADD  +  + +     
Sbjct: 220 WQTMTFTNFTVDHLDYHHTVENYALAKASLFRG-LSKAATAVLNADDPLAYYLAQLTQAQ 278

Query: 264 GCRVLSVGY------------------------------------------------QGK 275
                                                                     G+
Sbjct: 279 KVFYYIQDDALGSRGDFSQYIKDRSKILGKAWEKFMLEVQEKIPPESSREILCKAAAAGR 338

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            +  + V   ++  Q  IS   +      PL G F + NAL A    + I  +  L    
Sbjct: 339 VVAARNVKPTNSGWQAEISRGEETCTLTIPLLGRFNLNNALAAIATAMVICPNIDLRTWA 398

Query: 336 LEKLHVV--PGRFEFVGTNSRGGRIY-------------------VDYAHTSNSLEMILK 374
                +   PGR E +    +                        +D+AHT  ++E +L 
Sbjct: 399 AAMATMPAVPGRLEIIDGQGQACPTCRPSNGKLNLEDTTTPYRVVIDFAHTPGAMEALLT 458

Query: 375 NIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +R       ++ V+    G+RD+GKRP++  +   LAD  ++T +    E+P +I AE+
Sbjct: 459 EVRRHCCANKKLWVLANSCGNRDRGKRPLIAAVCERLADRIVLTLEEVGQENPAEILAEL 518

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE-TVHIVTNGEKKMSVDCDI 488
             G            R EAIR  I  L   D  VV   G E T +I  N      V+ D 
Sbjct: 519 QAGFRQPENIPVVPLRQEAIRYVISRLEPGDYFVVPSLGDEHTYNI--NNVAYPYVERDF 576

Query: 489 IREIL 493
           +++ L
Sbjct: 577 VKQCL 581


>gi|222823156|ref|YP_002574729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter lari RM2100]
 gi|222538377|gb|ACM63478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter lari RM2100]
          Length = 427

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 116/469 (24%), Positives = 197/469 (42%), Gaps = 59/469 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +  +S+  +    F  +  ++     F  QA+ + A+ I    + +       I  N 
Sbjct: 8   TFICDNSKECEKDCFF--LKTSQN--EKFTHQALEKQAKII----SIAECKSLLNIDENI 59

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I+                          +TGT+GK++ A  +  I    G     +G  
Sbjct: 60  KII-------------------------GITGTNGKTTTAGAIYSILLDLGYKCALMGTR 94

Query: 151 STISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +  +        LTT   +   + LS  S Q    + +E SSH L Q+R++G++  A  
Sbjct: 95  GSFINDKNITPKGLTTAPILQTLEILSLASEQKCEFLIMEVSSHALVQNRIEGLEFKAKI 154

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTNL +DH+D+H + + Y  AK                     +  +             
Sbjct: 155 FTNLTQDHLDFHGSFENYKQAKESF-----------FTDECMKFINKDASAIAFNVKNSF 203

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGI 327
           S G +    +  K  A+ N  +  ++    +F     L G F +YN L A+      +  
Sbjct: 204 SYGIENPSYYHIKAYALKNGIEAVVNFGKNNFTIESSLVGLFNLYNLLAASACVNELVRP 263

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   + + +     + GR + V  +     + VD+AHT + +E +L  ++      +IVV
Sbjct: 264 NLKELEKAISNFGGIEGRMQVVAKD-----VIVDFAHTPDGIEKVLDALK---YKNLIVV 315

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGN 444
           FG GG+RD+ KRP+M KIA   A   I+T DNPR E+P  I  +I+ GI        + +
Sbjct: 316 FGAGGNRDKTKRPLMAKIAKYYAKKLIITSDNPRFEEPMDIINDILSGIKKDENVFVECD 375

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           R +AI+ A+E  N  + +V+ GKG ET   +  G K    D +++ EIL
Sbjct: 376 RKKAIKKALEFKNDDEFVVILGKGDETYQEIK-GVKYPFNDKEVVLEIL 423


>gi|57238652|ref|YP_179783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni RM1221]
 gi|57167456|gb|AAW36235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni RM1221]
          Length = 427

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 199/467 (42%), Gaps = 59/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ ++   +    F  +   +     F  QA+ +GA+ I      +       I     I
Sbjct: 10  ITDNTLECEKECFF--LQTTQN--AKFHAQALEKGAKII----DVNECKKLLKIDEKIQI 61

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +                          +TGT+GK++ A+ +  I    G      G    
Sbjct: 62  I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96

Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +  LTT   +   + L   + +      +E SSH L Q+R++G+   A  FT
Sbjct: 97  FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H T + Y  AK   F +               +  +             + 
Sbjct: 157 NITQDHLDFHGTFENYKEAKELFFTDESL-----------KFINKDALAIKFNVRNAFTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329
           G +   ++  K  ++       ++ + + F    PL G F +YN LVA+      +  D 
Sbjct: 206 GIENPALYQIKAYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +     V GR E V        + VD+AHT + +E +L  ++     ++IVVFG
Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
            GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R 
Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRK 377

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI+ A+E+    D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|28493192|ref|NP_787353.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
 gi|28476233|gb|AAO44322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
          Length = 531

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 128/506 (25%), Positives = 222/506 (43%), Gaps = 24/506 (4%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DLI +    L +  +    Q+ +R ++ ++  ++ ++   IFVA  G    G  F+ 
Sbjct: 31  RLSDLIKQTGVRLTDCSN----QFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLD 86

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRS-NTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           Q  +    A++  +       S  + + +TPILV D+ R  L + A R+Y      I  +
Sbjct: 87  QVQS--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGI 144

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK+S      ++ +  G+S        + +S +    LTTP    L   +      
Sbjct: 145 TGTNGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSC-LTTPELCQLYARIFTAKQA 203

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                ++EASSH +++ RL  I L   +FTNL  +H++ H+  +AY+ AK  LF     +
Sbjct: 204 RADFFALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLN--KR 261

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296
            + A+I  D  Y   + K    +   +            F          +     IS  
Sbjct: 262 SNSAVINIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPS 321

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTN 352
           G   +    L G+    N  +A  +   +GID   +   L K      V+PGR E   T 
Sbjct: 322 GYRVESSISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTG 381

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    + VD+ HT +++E  L   ++IT GR+I +    G RD  KR  +G++    +D 
Sbjct: 382 NSPR-VIVDHGHTVDAVETALVAAKSITRGRLITIINADGQRDPSKRKHLGQLCGAYSDK 440

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +TD + R E+P +IR  I+ G+ G      +  +  +A+  AI++    D ++ +G G
Sbjct: 441 LFITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSGFG 500

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            +    V  G+K      D +R  L 
Sbjct: 501 DDPYLDVL-GKKIPYSLRDEVRRGLE 525


>gi|255321741|ref|ZP_05362896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
 gi|255301221|gb|EET80483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
          Length = 430

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 115/398 (28%), Positives = 166/398 (41%), Gaps = 23/398 (5%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQD 159
           L+     L       I+ +TGT+GK++ A+ +       G      G            D
Sbjct: 46  LAECKRLLGIDENIKIIGITGTNGKTTTAALICATLLNLGYGCGLCGTRGAFINGERIDD 105

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             LTT   +     L   S +G  +  +EASSH + Q R++ +      FTNL +DH+DY
Sbjct: 106 KALTTSEILRTLSYLKAASERGCEYFVMEASSHAIAQKRIESLDFAMKIFTNLTQDHLDY 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y   K   F +       A    +      +           L+          
Sbjct: 166 HGTFEEYARVKSEFFADD------APKLINIDDRGGIK----FNPANALTYALHANADFA 215

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL-CIAIGIDSALVLEHLEK 338
               ++       +            L GEF +YN + AA             +     K
Sbjct: 216 PGEYSLEGGIHCALKTPRGQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIALAASK 275

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V GR E V        + VD+AHT + +E +L  +R     +I+ VFG GGDRD+ K
Sbjct: 276 FDGVEGRMEVVSREPL---VIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTK 329

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEM 455
           RP MG IA   A   +VT DNPRSE+PE I AEI  G+          NR EAI+ A+E 
Sbjct: 330 RPKMGAIAQKYAHRLVVTSDNPRSEEPETIIAEICGGLEMNERVKCIANRKEAIKYALES 389

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           L + ++LV+ GKG ET   +  G K    D  ++RE+L
Sbjct: 390 LAQDEILVILGKGDETYQEIK-GVKYPFSDKQVVRELL 426


>gi|283953741|ref|ZP_06371272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794782|gb|EFC33520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 427

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 123/467 (26%), Positives = 199/467 (42%), Gaps = 59/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ ++   +    F  +   +     F  QA+ +GA+ I V+    L      I      
Sbjct: 10  ITDNTLECEKECFF--LQTTQN--AKFHTQALEKGAKIIDVNECKKLLKIDEKI------ 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                                   I+ +TGT+GK++ A+ +  I    G      G    
Sbjct: 60  -----------------------KIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96

Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +  LTT   +   + L   + +      +E SSH L Q+R++G+K  A  FT
Sbjct: 97  FINDESIDEKTLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H   + Y  AK   F +               +  +         C   + 
Sbjct: 157 NITQDHLDFHGNFENYKEAKELFFTDESL-----------KFINKDALAIKFNVCNAFTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID-S 329
           G +   ++  K  ++          + + F    PL G F +YN L A+     +     
Sbjct: 206 GIENPALYQIKAYSLEEGISAIAKNKDQTFHIDSPLLGLFNLYNLLAASACVNELAKPNL 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +     V GR E V        + VD+AHT + +E +L  ++     ++IVVFG
Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLNTLKN---KKLIVVFG 317

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRI 446
            GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ G       +   +R 
Sbjct: 318 AGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILLGFKKKEKVLTIEDRK 377

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI+ A+E+  K D++V+ GKG ET   +  G K    D  +I EIL
Sbjct: 378 EAIKKALELKEKDDLVVILGKGDETTQEIK-GVKYPFSDKVVINEIL 423


>gi|152967148|ref|YP_001362932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151361665|gb|ABS04668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 537

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 154/477 (32%), Positives = 229/477 (48%), Gaps = 19/477 (3%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V+ DSR ++ G ++ A+ G    G  F  QA A GA A +   A +         + 
Sbjct: 43  VTGVTLDSRRVRPGDLYAALPGANVHGARFAAQAAASGAVAALTDPAGA----DLVAAAG 98

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            P LVVD+ R  L   A+R++G+  +    + VTGT+GK++ A  V+ + + +G ++  +
Sbjct: 99  LPALVVDDPRAVLGDLAARIHGRPGDVLTTVGVTGTNGKTTTAYLVESLLRSAGWTTGLL 158

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G   T  +    D+  TTP    L   L+ + + GV   ++E SSH L QHR+DG+ L  
Sbjct: 159 GTVETRIAGERVDSVRTTPEAPDLHALLARMVAAGVRGCALEVSSHALVQHRVDGLVLDV 218

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY---ADDAYSKEVMKRAHNA 263
             FTNL +DH+D+H + + YF AK  LF     +     +    A DA     + R  + 
Sbjct: 219 ALFTNLSQDHLDFHGSMEEYFAAKASLFTPAHARRGVVWVEEDGAPDASWGRRLARRASV 278

Query: 264 GCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +  G                      T+     + D   PLPG+F V NA +AA  
Sbjct: 279 PVVTVGAGDADWRVTDVRTGRAGSTFHLSGTLPGGPVELDLTCPLPGDFNVANAALAAVA 338

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +G   A+V   L     VPGR + V        + VDYAHT ++L+ +L+ +R IT 
Sbjct: 339 VLHLGPAPAVVAAGLAAAEGVPGRMQTV-VRDGAPLVVVDYAHTPDALDRVLRTLRGITP 397

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHGIP 437
           GR++ VFG GGDRD+GKRP+MG     LAD+A+VTDDNPRSED       + A    G  
Sbjct: 398 GRLVAVFGAGGDRDRGKRPLMGAAVAALADVAVVTDDNPRSEDAAAVRAAVLAGARSGPA 457

Query: 438 GFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +E  +R  A+  A+       D +++AGKGHET      G      D       L
Sbjct: 458 EVLEVADRAAALDAALARCRGAGDTVLLAGKGHETGQE-AAGVVTPFDDRAAAAHAL 513


>gi|86149341|ref|ZP_01067572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596407|ref|ZP_01099644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|85840123|gb|EAQ57381.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191248|gb|EAQ95220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|315927609|gb|EFV06940.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 404

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 191/443 (43%), Gaps = 55/443 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I      +       I     I+                       
Sbjct: 7   AKFHAQALEKGAKII----DVNECKKLLKIDEKIQII----------------------- 39

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKAL 174
              +TGT+GK++ A+ +  I    G      G      +     +  LTT   +   + L
Sbjct: 40  --GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYL 97

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              + +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK   F
Sbjct: 98  QIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF 157

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +               +  +             + G +   ++  K  ++       ++
Sbjct: 158 TDESL-----------KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISTIVT 206

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + + F    PL G F +YN LVA+      +  D   + + +     V GR E V    
Sbjct: 207 NKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVAKG- 265

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VD+AHT + +E +L  ++     ++IVVFG GGDRD+ KRP+MGKI    A IA
Sbjct: 266 ----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIA 318

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GKG E
Sbjct: 319 IITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDE 378

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G K    D  ++ EIL
Sbjct: 379 TTQEIK-GIKYPFSDKVVVNEIL 400


>gi|300173159|ref|YP_003772325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887538|emb|CBL91506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysineligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 491

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 113/510 (22%), Positives = 209/510 (40%), Gaps = 39/510 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL     K   +L+ +  +   +   +   + +  D+R ++A  + V + G       F
Sbjct: 1   MKLT---SKTIEQLLIEQQLLVSKPNIDLAFDFLHYDTRQVKANTLLV-VKGA------F 50

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
            P+ +         ++          +  + P   V N +K L++ +   +    +   I
Sbjct: 51  RPEYLT-------HTADIEGLITETILDVSLPQWQVTNVQKALAVLSMAFFDYPQKALWI 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAK 172
            A TGT GK++ A     I + +  +           T T     + + LTTP    L K
Sbjct: 104 GAFTGTKGKTTAAYMAFNILKDATNNHTALFSTVDRITGTGPGDKKKSDLTTPESYELFK 163

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +      G+TH+ +E SS    + R+ G++   G+F N+  DHI     +   F   + 
Sbjct: 164 DMRQAVDNGMTHLIMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIG--PNEHPTFEDYLA 221

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               L       I+ A+  + K V+  A     +V +    G+  +   V       +  
Sbjct: 222 HKMMLFDHSDQVIVNAESEHLKTVLGHATQTHDKVYTYSLAGQGGNYSYVSRESAIHESR 281

Query: 293 ISVEGKDFD-----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + VE  D +     +   LPG+F   NA+ A  +    G     ++  L+ + + PGR  
Sbjct: 282 LIVEPSDLNELAGEYRLNLPGDFNESNAMAALIMTALAGAKHENMVHGLDVVFI-PGRML 340

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            +     G   +VDYAH   S+  +          G+++VV G  G++   +R   G++ 
Sbjct: 341 SLPIVGHGV-AFVDYAHNYASMRALLNFAQNQYPEGKVLVVVGSPGNKGVSRRADFGRVV 399

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVL 462
            +LADI  +T D+P+ E P+ I  EI   I         + +RI+AI  AI+   ++D++
Sbjct: 400 SELADIVYLTADDPQFESPKAIADEIAENINNKQLEVHFEMDRIKAIFQAIKQSGERDIV 459

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +VAGKG +    +   +     D  +++  
Sbjct: 460 IVAGKGEDPYQKINGKDVPYIGDYAVVQSY 489


>gi|325284699|ref|YP_004264162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324316188|gb|ADY27302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 504

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 192/493 (38%), Gaps = 29/493 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRH--IQAGWIFVAIVGNKEDGHL 58
           M L DL        +         W   +++ V+   R   +  G +F AI G + DGH 
Sbjct: 5   MLLSDLASHLS---LRSGPSVETGWAAAEVSAVTH--RADWVTPGALFAAIRGERHDGHA 59

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
           F+ +A  +GA A +           A   S  P L V + R  L+  A+ L G       
Sbjct: 60  FLQEAAERGAVAALGE------GLPAGQHSPLPYLQVPDARAALADAAALLSGHPSRELK 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA----QDNRLTTPSPIYLAK 172
           ++ VTGT GK++ +     + +  G S+  +                   TTP    L  
Sbjct: 114 VVGVTGTDGKTTTSWLTAALLRAGGQSTGLLSSAGYQLPDGQLRAYPAHFTTPEAPQLQG 173

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  +         +E SSH L   R+ G+   A  +T+L ++H+D+H T + YF AK R
Sbjct: 174 LLREMVDARAQAAVIETSSHALTLERVRGVAWDAAIWTHLSQEHLDFHGTLEDYFAAKRR 233

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L + +P  +   D      ++          +      +           +    
Sbjct: 234 -----LIERAPLAVLNLDDPWTRHLRGVAPQELTYSAAQAGADWRASDLRGEAGGRASFA 288

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +      F    PL G FQ+ NAL A       G+ +A +   L +    PGR E V + 
Sbjct: 289 VDGPAGRFRATLPLAGAFQMGNALAAMAAAHHFGVSAAELQAGLREFGGPPGRMETVPSR 348

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-GGDRDQGKRPIMGKIALDLAD 411
               R+  D AHT  SLE  L+ +R +T G++  V G   G RD  K   M  +A   AD
Sbjct: 349 PGQPRVVSDSAHTPLSLENTLRALRPLTGGQLWAVVGSAAGGRDTSKWGPMAAVASAWAD 408

Query: 412 IAIVTDDNPRSEDPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I+T+ + R    E+I   +    G   +   G+R +AI  A+      D +++A KG 
Sbjct: 409 QVILTEADHRETPLEQILEAMSAAAGQDNWQCIGDRAQAIAYAVTHAGPDDTVLIANKGG 468

Query: 470 ETVHIVTNGEKKM 482
           E    +  G    
Sbjct: 469 EHF--LQRGRTVY 479


>gi|315059091|gb|ADT73420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 404

 Score =  206 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 191/443 (43%), Gaps = 55/443 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I      +       I     I+                       
Sbjct: 7   AKFHAQALEKGAKII----DVNECKKLLKIDEKIQII----------------------- 39

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKAL 174
              +TGT+GK++ A+ +  I    G      G      +     +  LTT   +   + L
Sbjct: 40  --GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYL 97

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              + +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK   F
Sbjct: 98  QIATQKKCDFFIMEVSSHALIQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF 157

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +               +  +             + G +   ++  K  ++       ++
Sbjct: 158 TDESL-----------KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISAIVT 206

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + + F    PL G F +YN LVA+      +  D   + + +     V GR E V    
Sbjct: 207 NKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVAKG- 265

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VD+AHT + +E +L  ++     ++IVVFG GGDRD+ KRP+MGKI    A IA
Sbjct: 266 ----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIA 318

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GKG E
Sbjct: 319 IITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDE 378

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G K    D  ++ EIL
Sbjct: 379 TTQEIK-GIKYPFSDKVVVNEIL 400


>gi|307720218|ref|YP_003891358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978311|gb|ADN08346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 431

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 195/433 (45%), Gaps = 33/433 (7%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++     +  + +    +++ I+ +++         + L+G +   I+ +TGT+GK++
Sbjct: 25  AFVLTHQNRAYLEDAKQHNAHS-IIKIEDI--------AELFGVNKIKIIGITGTNGKTT 75

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAKALSYLSSQGVTHVS 186
            AS +       G  +   G      +        LTTPS +   K +      G  +  
Sbjct: 76  TASAIYSFLLDLGYKAALQGTRGLFMNDEVCEGKTLTTPSVLNTYKHIYQAVCAGCEYFI 135

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L Q R++G+K      TN+ +DH+DYH+T + Y   K                
Sbjct: 136 MEVSSHALVQRRIEGLKFELKILTNITQDHLDYHKTIEEYIAVKNGF-----------FQ 184

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                   +   +A        + G +    +     +++      I    +   F   L
Sbjct: 185 DESKKLINKDEPKAAFNFKNAYTYGIENPATYRLMAYSLNEGSSGIIQHFQEIVPFTASL 244

Query: 307 PGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G F +YN + A      I       + + ++    V GR E V        + VD+AHT
Sbjct: 245 HGFFNLYNLMAAIAATHLITDKTLEEIADVVDNFAGVSGRMEQV---CAAPNVIVDFAHT 301

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + ++ +L  ++      +IVVFG GGDRD+ KRPIMG++A  LA   IVT DNPR EDP
Sbjct: 302 PDGMQQVLNALKE---KELIVVFGAGGDRDRLKRPIMGRVAASLAKKVIVTSDNPRHEDP 358

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           E I  +I+ GI      I + NR +AI+ A++M   ++V+V+ GKG E   ++ + EK  
Sbjct: 359 EIIIDDILEGIQDKTNIIVELNRKKAIQMALDMQEDEEVVVILGKGDEAYQVIYD-EKFA 417

Query: 483 SVDCDIIREILGL 495
             D ++++E+L L
Sbjct: 418 FDDREVVKELLNL 430


>gi|160915595|ref|ZP_02077806.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
 gi|158432715|gb|EDP11004.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
          Length = 484

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 131/487 (26%), Positives = 224/487 (45%), Gaps = 27/487 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            F +L+ ++ +       R +  +S DSR ++   +FVAI          I +A+ +GA 
Sbjct: 14  TFTDLLAKVGVSCKDS--RIVRGISDDSREVEQDMLFVAIKATAMK-KEHILEALTKGAV 70

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSS 128
            ++               ++  I    + ++ L L    LYG++     +AV+GT+GK+S
Sbjct: 71  -VLCEK---------QPFADANIYEAASLKQKLILLLDTLYGRYEACQCIAVSGTNGKTS 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           VAS++ Q+          IG           +   TTP  I LAK       + +TH+ +
Sbjct: 121 VASYIAQLLYMQKARVMVIGTGFVKGETIFFETSNTTPGLIALAKYFDIARQKQITHIVM 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH + Q R+  I+  A  FTN+  DH+DYH T+  Y   K +L          + + 
Sbjct: 181 EVSSHAIAQERIARIRFDAVVFTNITADHLDYHITKTHYRFTKFKL----ANYLKKSGVI 236

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +A  + ++   H    R +S G     I ++ V    +  + ++      +     L 
Sbjct: 237 IYNADYEYMLPLVHMQSHRCVSYGLGAAHIPIEHVVLSESDIRFSLQG----YKIRAHLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   VYN   A        ++   + E +EKL  V GR E V       ++++DYAHT+ 
Sbjct: 293 GLMNVYNVAAALTFMRINDVEYEQLQEDVEKLRAVKGRLEVVYQG--KFQVWIDYAHTAA 350

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +L+ +L   + +  GR+I + GCGG+RD  KRPIM +IA+  +D+AI T DNPR E    
Sbjct: 351 ALKEVLSFAKQVAKGRVISIVGCGGNRDVKKRPIMAEIAVKYSDVAIYTSDNPRFERVCD 410

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           I  ++            +R  AI+ A+++    D++V+ GKG E    +  G++    D 
Sbjct: 411 ILKDMHAERFLNACVFEHRYYAIKHAVKIAQNSDIIVITGKGSEAFTSIY-GKQYPCNDA 469

Query: 487 DIIREIL 493
             ++++L
Sbjct: 470 TWVKKLL 476


>gi|205355653|ref|ZP_03222423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346430|gb|EDZ33063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 450

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 191/443 (43%), Gaps = 55/443 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             F  QA+ +GA+ I      +       I     I+                       
Sbjct: 53  AKFHAQALEKGAKII----DVNECKKLLKIDEKIQII----------------------- 85

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKAL 174
              +TGT+GK++ A+ +  I    G      G      +     +  LTT   +   + L
Sbjct: 86  --GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYL 143

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              + +      +E SSH L Q+R++G+   A  FTN+ +DH+D+H T + Y  AK   F
Sbjct: 144 QIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQDHLDFHGTFENYKEAKELFF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +               +  +             + G +   ++  K  ++       ++
Sbjct: 204 TDESL-----------KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISAIVT 252

Query: 295 VEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            + + F    PL G F +YN LVA   +   +  D   + + +     V GR E V    
Sbjct: 253 NKNQTFHIDSPLLGLFNLYNLLVASVCVNELVKPDLKDLEKAISGFGGVCGRVEQVAKG- 311

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               + VD+AHT + +E +L  ++     ++IVVFG GGDRD+ KRP+MGKI    A IA
Sbjct: 312 ----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIA 364

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
           I+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GKG E
Sbjct: 365 IITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDLVVILGKGDE 424

Query: 471 TVHIVTNGEKKMSVDCDIIREIL 493
           T   +  G K    D  ++ EIL
Sbjct: 425 TTQEIK-GIKYPFSDKVVVNEIL 446


>gi|254468468|ref|ZP_05081874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           1 [beta proteobacterium KB13]
 gi|207087278|gb|EDZ64561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           1 [beta proteobacterium KB13]
          Length = 423

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/427 (30%), Positives = 200/427 (46%), Gaps = 15/427 (3%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVAS 131
             A                L V +          R+YG       +  VTGT+GK+S A 
Sbjct: 3   EEANFDASTYLKKYPKIKFLGVRDLAWKQKKVLDRVYGNLNRHIKLYGVTGTNGKTSTAF 62

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++  +  +    S  IG  S           TTP    L    +    + + +  +E SS
Sbjct: 63  WLNHLLSKLEKPSKLIGTISKDKVVI----NTTPDLFVLYSLFNKGIQKNIKNFVLEVSS 118

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HG+DQ R+  +    G FTNL RDH+DYH+T   YF +K R F E + KES   I     
Sbjct: 119 HGVDQGRIHELNFEYGIFTNLSRDHLDYHKTMNNYFLSKERFFIENVKKESVINIDNSYG 178

Query: 252 YS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 ++K          S     K I++K+    +   + ++ +  K   F   + GE
Sbjct: 179 MRLANNLIKLNKKIFTFGFSKEANVKIINIKQQFLTNKYSEFSLQIANKIHTFKTNVIGE 238

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--YVDYAHTSN 367
           F +YN + A  +C    ID   V E +++L V  GR   +       +    +DYAHT +
Sbjct: 239 FNLYNLISAICICYLKKIDIHKVTEVIKRLPVPDGRMNVINKTINNIQKKVIIDYAHTPD 298

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            L+ +L+ I+ I  G+I++VFGCGGDRD+GKR +MG +A   AD   +T+DNPR+E+P +
Sbjct: 299 GLKKLLQTIKKIYQGKILLVFGCGGDRDKGKRKLMGNVANHYADFVCITNDNPRNENPNQ 358

Query: 428 IRAEIIHGIPGF-IEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVD 485
           I  +I  G+        +R +AI  AI+  N    ++V+AGKGHE   I+ N +K    D
Sbjct: 359 IADQICEGVSCLKKIILDRKKAIEYAIKKTNYP--IVVIAGKGHEKYQIIKN-KKIDFSD 415

Query: 486 CDIIREI 492
             ++ +I
Sbjct: 416 KKVVMDI 422


>gi|86152303|ref|ZP_01070514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85840792|gb|EAQ58043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 427

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 118/422 (27%), Positives = 194/422 (45%), Gaps = 33/422 (7%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           + +  +  +     I+ V+  +K L +            I+ +TGT+GK++ A+ +  I 
Sbjct: 29  NAKFHARALEKGAKIIDVNECKKLLKI-------DEKIQIIGITGTNGKTTTAAAIYSIL 81

Query: 138 QRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              G      G      +     +  LTT   +   + L   + +      +E SSH L 
Sbjct: 82  LDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALV 141

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R++G+  +A  FTN+ +DH+D+H T + Y  AK   F +               +  +
Sbjct: 142 QNRIEGLNFVAKIFTNITQDHLDFHGTFENYKEAKELFFTDESL-----------KFINK 190

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                        + G +   ++  KV ++       ++ + + F    PL G F +YN 
Sbjct: 191 DALAIKFNVRNAFTYGIENPALYQIKVYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNL 250

Query: 316 LVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           LVA+      I  D   + + +     V GR E V        + VD+AHT + +E +L 
Sbjct: 251 LVASACVNELIKPDLKDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLD 305

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++     ++IVVFG GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ 
Sbjct: 306 TLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILS 362

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G       +   +R EAI+ A+E+    D++V+ GKG ET   +  G K    D  ++ E
Sbjct: 363 GFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNE 421

Query: 492 IL 493
           IL
Sbjct: 422 IL 423


>gi|223038509|ref|ZP_03608803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
 gi|222880366|gb|EEF15453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
          Length = 430

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 115/398 (28%), Positives = 170/398 (42%), Gaps = 23/398 (5%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQD 159
           L+     L       I+ +TGT+GK++ A+ +       G      G       +    D
Sbjct: 46  LAECKRLLDIDESIKIIGITGTNGKTTTAAAICATLLNLGYGCGLCGTRGAFVNNERIDD 105

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             LTT   +     L   S +G  +  +E SSH + Q R++ +      FTNL +DH+DY
Sbjct: 106 KALTTSEILRTLSYLKAASERGCEYFVMEVSSHAIAQKRIESLDFAMKIFTNLTQDHLDY 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y   K   F +       A    +      +           L+          
Sbjct: 166 HGTFEEYARVKSEFFADD------APKLINIDDRGGIK----FNPANALTYALHANADFA 215

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL-CIAIGIDSALVLEHLEK 338
               ++    + T+    +       L GEF +YN + AA             +     K
Sbjct: 216 PGEYSLEGGIRATLKTPRRQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIARAAAK 275

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V GR E V        + VD+AHT + +E +L  +R     +I+ VFG GGDRD+ K
Sbjct: 276 FDGVEGRMEVVSREPL---VIVDFAHTPDGIEKVLNALR---HRKIVAVFGAGGDRDRTK 329

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEM 455
           RP MG IA   A   +VT DNPRSE+PE I AEI  G+          NR EAI+ A+E 
Sbjct: 330 RPKMGAIAQKYAHRLVVTSDNPRSEEPESIIAEICGGLEMNECVKCIANRKEAIKYALES 389

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           L + ++LV+ GKG ET   +  G K    D +++RE+L
Sbjct: 390 LTQDEILVILGKGDETYQEIK-GVKYPFSDKEVVRELL 426


>gi|153952381|ref|YP_001398918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939827|gb|ABS44568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 427

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 192/442 (43%), Gaps = 55/442 (12%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F  QA+ +GA+ I      +       I     I+                        
Sbjct: 31  KFHAQALERGAKII----DVNECKKLLKIDEKIQII------------------------ 62

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALS 175
             +TGT+GK++ A+ +  I    G      G      +     +  LTT   +   + L 
Sbjct: 63  -GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQ 121

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             + +      +E SSH L Q+R++G+K  A  FTN+ +DH+D+H T + Y  AK   F 
Sbjct: 122 IATQKKCDFFIMEVSSHALIQNRIEGLKFAAKIFTNITQDHLDFHGTFENYKEAKELFFT 181

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +               +  +             + G +   ++  K  ++        + 
Sbjct: 182 DESL-----------KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISAVATN 230

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + + F    PL G F +YN LVA+      +  D   + + + +   V GR E V     
Sbjct: 231 KNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISEFGGVCGRVEQVAKG-- 288

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + VD+AHT + +E +L  ++     ++IVVFG GGDRD+ KRP+MGKI    A IAI
Sbjct: 289 ---VIVDFAHTPDGIEKVLDTLKN---KKLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAI 342

Query: 415 VTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           +T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+    D++V+ GKG ET
Sbjct: 343 ITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDET 402

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
              +  G K    D  ++ EIL
Sbjct: 403 TQEIK-GVKYPFNDKVVVNEIL 423


>gi|157415861|ref|YP_001483117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386825|gb|ABV53140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748498|gb|ADN91768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931687|gb|EFV10648.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 427

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 199/467 (42%), Gaps = 59/467 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ ++   +    F  +   +     F  QA+ +GA+ I      +       I     I
Sbjct: 10  ITDNTLECEKECFF--LQTTQN--AKFHAQALEKGAKII----DVNECKKLLKIDEKIQI 61

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +                          +TGT+GK++ A+ +  I    G      G    
Sbjct: 62  I-------------------------GITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGA 96

Query: 153 ISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +  LTT   +   + L   + +      +E SSH L Q+R++G+K +A  FT
Sbjct: 97  FINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLKFVAKIFT 156

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+D+H T + Y  AK   F +               +  +             + 
Sbjct: 157 NITQDHLDFHGTFENYKEAKELFFTDESL-----------KFINKDALAIKFNVRNAFTY 205

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDS 329
           G +   ++  K  ++        + + + F    PL G F +YN LVA+      +  D 
Sbjct: 206 GIENPALYQIKAYSLEEGISAIATNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDL 265

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +     V GR E V        + VD+AHT + +E +L  ++     ++IVVFG
Sbjct: 266 KDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLDTLKN---KKLIVVFG 317

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
            GGDRD+ KRP+MG I    A IAI+T DNPRSE+P+ I  EI+ G       +   +R 
Sbjct: 318 AGGDRDKTKRPLMGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRK 377

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           EAI+ A+E+    D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 378 EAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 423


>gi|302336448|ref|YP_003801655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
 gi|301320288|gb|ADK68775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
          Length = 532

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 125/517 (24%), Positives = 207/517 (40%), Gaps = 34/517 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
              F E     S          +  V  DSRH   G +FV   GN      ++ QA+A G
Sbjct: 22  ANVFDEAGANGSGGAEGGVSADVCGVDCDSRHAAPGHLFVC-KGNAFR-ASYLAQALAAG 79

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
               +   A + +   A      P LV  + R+ ++L ++  +G    N  +L +TGT G
Sbjct: 80  CVGYLCDEARAGE--LAAHCPQVPRLVSHDLRRAMALVSAEAWGHPDRNLGVLGITGTKG 137

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTS-------TISSFAQDNRLTTPSPIYLAKALSYLS 178
           KS+VA  ++ I       +     T              +++  TTP    L + L   +
Sbjct: 138 KSTVAYMLRSILDSDADGTRGAPHTGILGSIETFDGIEREESVNTTPEAPDLWRHLHNAA 197

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G++H+ +E SS  L   R+ G+ L    F N+G DHI   +     F         + 
Sbjct: 198 TSGLSHMVMEVSSQALKYDRVVGLGLDVACFLNIGCDHISPVE--HPSFEDYFESKLRIF 255

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLS-----------VGYQGKFIHLKKVCAIHN 287
            +   A++  D   +  +++RA   G  V              G  G  +  + + +   
Sbjct: 256 DQACVAVVNLDSDKADVILERAARCGRTVTFSATGQGAGGAPAGAGGADVWAEGISSREG 315

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + Q+ +            +PG F   NAL A  +C A GI    V+  L ++ V PGR E
Sbjct: 316 RIQMMVRTPSWSEPVTVSMPGLFNADNALAAIAICEACGIGRERVVAGLARVRV-PGRME 374

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA 406
            + T        VDYAH   S +    ++    +GR II V G  G +   +R  + + A
Sbjct: 375 LLPTADPKVTGIVDYAHNKLSYQRFFSSMAQEFAGRAIIAVLGAPGGKAYERRRELPQEA 434

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEML---NKQD 460
              AD  I T+++P  +  E+I +++    P    F    +R  AIR A+E+     +  
Sbjct: 435 SKWADYLIYTEEDPAGDPVEEICSQLAAATPAGQDFEVIVDRPAAIRRAVELAFGYPQGA 494

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           ++ +  KG ET+  V N       D  +    +G  L
Sbjct: 495 LVCLLAKGDETLQHVGNSFVPCETDGTLFERAVGERL 531


>gi|326692780|ref|ZP_08229785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 495

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 109/507 (21%), Positives = 206/507 (40%), Gaps = 34/507 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQ-WRERKINEVSSDSRHIQAGWIFVAIVGN-KEDGHLFIPQ 62
           +L  K   +L+    +   +   ++  + +  D+R ++   +FV + G  +     ++ Q
Sbjct: 2   ELTSKTIEQLLTAHHLLVAKPDSDQTFDFLHYDTRQVKDQTLFV-VKGAFRV---EYLAQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           A   G   +V             +  + P   V + +K LS+ +   +        I A 
Sbjct: 58  A--TGVTGLVTEE---------LLPVDLPQWQVTDVQKALSVLSMAFFDYPQNDLWIGAF 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           TGT GK++ A    QI Q                T    +  + + LTTP    L K + 
Sbjct: 107 TGTKGKTTAAYMAFQILQHMTNQHTALFSTVDRITGNQPADKKKSDLTTPESYELFKDMR 166

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G+TH+ +E SS    + R+ G++   G+F N+  DHI  ++          ++  
Sbjct: 167 RAVDNGMTHLVMEVSSQAYLKQRVYGLEFQVGAFLNISPDHIGPNEHPSFEDYLAHKMML 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++      +D   +     + H+      S   QG     + + +  ++ + T++ 
Sbjct: 227 LDHAEQVIVNAASDQLSAVLAHAKTHHDHVYTYSQTDQGGEYTYQSLESAIHESRFTVAE 286

Query: 296 EG---KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 +  +   LPG+F   NAL A  +    G   A ++  L+ + + PGR   +   
Sbjct: 287 SDLAEMNGTYRLNLPGDFNESNALAALIMTALAGAQHADMVAGLDTVFI-PGRMLSLPIP 345

Query: 353 SRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             G   +VDYAH   S+  +          G++ VV G  G++   +R   G++  + AD
Sbjct: 346 DHGV-AFVDYAHNYASMRALLQFAQSQYPDGKVSVVIGAPGNKGVSRRADFGRVVSEFAD 404

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              +T D+P+ E P  I  EI   I         + +RI+AI+ AI   N  D+++VAGK
Sbjct: 405 TVFLTADDPQFESPMAIAKEIAAHITNPDVTVHFEMDRIQAIQQAIAQANPHDIVIVAGK 464

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILG 494
           G +    +   ++    D  +++ +L 
Sbjct: 465 GEDPYQKINGVDEPYIGDYAVVQNVLN 491


>gi|241896418|ref|ZP_04783714.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
 gi|241870398|gb|EER74149.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
          Length = 518

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 121/517 (23%), Positives = 205/517 (39%), Gaps = 41/517 (7%)

Query: 3   LQDLIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L  L   +   L+ +Q  +      + +I  ++ +S  +  G +   I GN +    ++ 
Sbjct: 10  LMTLTADNITTLLADQDLLISAPDFDGEIQHLAYNSNDVVPGTLLF-IKGNFK--AEYLT 66

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
            AI +G  AI+          S    +  P  V D+    +S+ A   Y     N+  + 
Sbjct: 67  DAIEKGVTAIIA-------PASFKHATKLPTWVADDVPAAMSIIAMAFYQYPQNNLALIG 119

Query: 120 VTGTSGKSSVASFVQQICQRSGLS-----SFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +TGT GK+S A    +I +          S     T +   +     LTTP  + L + +
Sbjct: 120 ITGTKGKTSTAYMAYEILRAYTHDKVALSSTLQVITGSEPQYHYRAHLTTPESVDLFRWM 179

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G+TH+ +E SS      R+ G+    G F N+  DHI   + +   F   ++  
Sbjct: 180 REAVDNGMTHMVMEVSSQAFKMRRVYGLHFNVGIFLNISPDHIG--ENEHPTFEDYLQHK 237

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L       ++  D  +  E++  A     R     Y  + +   K           + 
Sbjct: 238 MMLFDHSEQIVLNVDSDHFGELIAHAELMVHRDGIWLYGQEDVDSPKADVYFEATDANLH 297

Query: 295 --------------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                               ++   +PG+F   NAL A      +G D+  + E LE + 
Sbjct: 298 GSVFKVREVGQQAEHLHIKGEYTLDMPGDFNQSNALAAMIATRLVGADAPAMAEGLETVK 357

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKR 399
           V PGR + + T   G  IYVDYAH   S+  +L+ +R      ++ +V G  G++   +R
Sbjct: 358 V-PGRMQVLNTQKHGT-IYVDYAHNYASIAALLQFVRQNESVNQLAIVVGAPGNKGVSRR 415

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM 455
           P +GK   + AD+  +T D+P+ EDP KI  EI   I         + +R +AI  AI  
Sbjct: 416 PGIGKAVSEGADVVYLTSDDPQYEDPAKIADEIQAAITNPKVTIYRELDRTKAIIAAILA 475

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
               DV+V+A KG +    +   +     D  +   I
Sbjct: 476 AGPDDVVVLAAKGLDEYQKIDGVDTPYENDWAVANRI 512


>gi|295094721|emb|CBK83812.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 404

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 114/398 (28%), Positives = 188/398 (47%), Gaps = 24/398 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKA 173
             ++ VTGT GK++VA  ++ +  R G  +  +G            +  TTP  IYL + 
Sbjct: 1   MKVIGVTGTKGKTTVACMIKSMLDRWGRRTGLVGTIEIDDCIRKIPSVNTTPGTIYLHRK 60

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L+ + + G  +  +E SS GL   R+ G++     +TNL  DHI      +    A+   
Sbjct: 61  LADMVANGAEYCVMEVSSQGLMHGRVSGVEFDICVYTNLAPDHIGR---NEHRTFAEYGR 117

Query: 234 FEELLPKESPAIIYADDAYSKEVMK--------RAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           ++  L  +    +   D      +              G R  +    G       +  +
Sbjct: 118 WKRSLFSKCKTAVINADDMYSGCIAAEAVNAGAEVVYYGVRNHTAAGDGNVCMAGAIHRL 177

Query: 286 HNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              + + I  E +            +PGEF VYN+L A   C  IGI   ++ +      
Sbjct: 178 ILHRVMGIGYECERTDGESTYMTVGIPGEFNVYNSLAAVTTCGIIGIPMEVMQDSQSD-M 236

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V GR E V       RI++DYAH + SLE +L  +R     R+I +FGCGG+R  G+R 
Sbjct: 237 KVRGRLEPV-EIPGYARIFIDYAHNAVSLENVLTTLRQYRPKRLICLFGCGGNRSAGRRK 295

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEML 456
            MG ++  LAD+ ++T DNPR E PE I  +I  G+      +++  +R++AIR A+E+ 
Sbjct: 296 GMGFVSGRLADMTVITSDNPRFESPEAIMTDIETGVLEGGGEYVKICSRLDAIRYALEIS 355

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++ D++++AGKGHET   +  G +    + ++IR+IL 
Sbjct: 356 DRDDIVLLAGKGHETYQDIE-GRRTQMDEREMIRQILE 392


>gi|57505613|ref|ZP_00371540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter upsaliensis RM3195]
 gi|57016160|gb|EAL52947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter upsaliensis RM3195]
          Length = 428

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 199/466 (42%), Gaps = 61/466 (13%)

Query: 31  NEVSSDSRHIQAGWIFV-AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             ++ +S   +    F+      K     F  +A+ +GA+                    
Sbjct: 8   TFITDNSSECEKDCFFLSCFQNAK-----FKDEAVKKGAK-------------------- 42

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I+ V+ T+K L +            I+ +TGT+GK++ A+ +  I    G      G 
Sbjct: 43  --IIDVEETKKLLGI-------DKTIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGT 93

Query: 150 TSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +     +  LTT   +   + L   + +G     +E SSH L Q+R++G++  A 
Sbjct: 94  RGAFINDEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEVSSHALVQNRIEGLEFAAK 153

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL +DH+D+H + + Y  AK   F +               +  +     +      
Sbjct: 154 IFTNLTQDHLDFHGSFENYKEAKESFFTDESL-----------KFINKDAFHINFNVKNA 202

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIG 326
            + G +    +  K  A+ N+    +  + + F     L G F +YN L A+      + 
Sbjct: 203 YTYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYNLLAASACVNELVK 262

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            + A +   +     V GR E +        + VD+AHT + +E +L +++      +IV
Sbjct: 263 PNLADLERAISGFGGVCGRVEKIVEG-----VIVDFAHTPDGIEKVLDSLKN---KNLIV 314

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443
           VFG GGDRD+ KR +MGK+    A  AI+T DNPRSED   I  EI+ G       +   
Sbjct: 315 VFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKNTPLMIE 374

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           NR  AI  A+E+  + D++++ GKG ET   +  G K    D +++
Sbjct: 375 NRELAIYKALELKKEDDLVIILGKGDETYQEIK-GVKYPFSDKEVV 419


>gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 508

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 124/457 (27%), Positives = 201/457 (43%), Gaps = 24/457 (5%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +  +  + +DSR +  G +F  + G   DGH  +P A A GA A++V          
Sbjct: 28  GADDLTVRGLVTDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMALLVDRPVE----- 82

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSG 141
               ++ P L V + R  L    + L G       ++ VTG++GK++ ++ V+ + + +G
Sbjct: 83  ----TSLPQLCVPSVRAQLGPLGALLAGDPARALGLVGVTGSNGKTTTSALVRGVLEAAG 138

Query: 142 LSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  +G      +  +++  LTTP    L + L  +   G     VEASS  LD  R+D
Sbjct: 139 TCTGVVGTLGAQVAGLSRETALTTPEAPELHELLGAMVEAGARRAVVEASSIALDMGRMD 198

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G+      FT    DH+D+H T + Y+ +K RLFE         +   DD + + +  +A
Sbjct: 199 GLAFEVAVFTGFEEDHLDHHGTVEQYWASKARLFEPGRTAAGVVVT--DDPWGRRLADQA 256

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                RV S       +   +  A     +V +  +        PL G   V N   A  
Sbjct: 257 AVRVTRVGSGADADVRVLGWRTGAAG--TEVLLGDDAGGHRVRSPLVGRVHVTNLAAAWA 314

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
               +G+    +   L  +    GR   +G + R   + VDYAHT  +L   +  +R + 
Sbjct: 315 TGRVLGVPPDRIAAGLAAVAPPRGRNTVLGGSGRP-VVVVDYAHTPRALAAAVDTVRDLT 373

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              GR+ +V G  G RD+ KR  +G+ A   AD   +T++    EDP  IRAE+  G+  
Sbjct: 374 GPGGRVHLVVGARGRRDRYKRQGLGESA-RAADCVWLTNEGSHGEDPAAIRAELRLGLLG 432

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
                    +R EAI  A+      DV++V G+GHET
Sbjct: 433 TPAAVRTVPDRREAITAAVRAAGPADVVLVVGRGHET 469


>gi|121612468|ref|YP_001001284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167006178|ref|ZP_02271936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249826|gb|EAQ72785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 427

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 117/422 (27%), Positives = 193/422 (45%), Gaps = 33/422 (7%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           + +  +  +     I+ V+  +K L +            I+ +TGT+GK++ A+ +  I 
Sbjct: 29  NAKFHARALEKGAKIIDVNECKKLLKI-------DEKIQIIGITGTNGKTTTAAAIYSIL 81

Query: 138 QRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
              G      G      +     +  LTT   +   + L   + +      +E SSH L 
Sbjct: 82  LDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALV 141

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q+R++G+  +A  FTN+ +DH+D+H T + Y  AK   F +               +  +
Sbjct: 142 QNRIEGLNFVAKIFTNITQDHLDFHGTFENYKKAKELFFTDESL-----------KFINK 190

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                        + G +   ++  K  ++       ++ + + F    PL G F +YN 
Sbjct: 191 DALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISAIVTNKNQTFHIDSPLLGLFNLYNL 250

Query: 316 LVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           LVA+      I  D   + + +     V GR E V        + VD+AHT + +E +L 
Sbjct: 251 LVASACVNELIKPDLKDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTPDGIEKVLD 305

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++     ++IVVFG GGDRD+ KRP+MGKI    A IAI+T DNPRSE+P+ I  EI+ 
Sbjct: 306 TLKN---KQLIVVFGAGGDRDKTKRPLMGKIVEHFAKIAIITSDNPRSEEPKTIMEEILS 362

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G       +   +R EAI+ A+E+    D++V+ GKG ET   +  G K    D  ++ E
Sbjct: 363 GFAKKEKVLMIEDRKEAIKKALELKENDDLVVILGKGDETTQEIK-GIKYPFSDKVVVNE 421

Query: 492 IL 493
           IL
Sbjct: 422 IL 423


>gi|296272311|ref|YP_003654942.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096485|gb|ADG92435.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 425

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 119/466 (25%), Positives = 186/466 (39%), Gaps = 57/466 (12%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           + +S+       FV    N      FI  A   G +                       +
Sbjct: 11  TDNSKEADKNSAFVYSKQN----EKFIEDAKKNGCK---------------------EFI 45

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
             ++                   ++ +TGT+GK++ A+ +  +    G      G     
Sbjct: 46  KSEDL--------KNHCDFTSIKVIGITGTNGKTTTAAAIYSLLLDLGYKVALQGTRGFF 97

Query: 154 --SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 ++  LTTP  +     +            +E SSH ++Q R++G+       TN
Sbjct: 98  INEQRVEEYSLTTPVQLGNFAHIQKAIENSCDFFVMEVSSHAIEQKRIEGLNFELKILTN 157

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + RDH+DYH+T + Y N K   F +   K     +   D        +A       L+ G
Sbjct: 158 ITRDHLDYHKTIEEYINVKNSFFNDDSKK-----LINKDEI------KAKFNPKNCLTYG 206

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSA 330
                 +  +  +  +   V +    K   F   + G F VYN   A             
Sbjct: 207 LDSPSTYKVQAYSFKDGMHVALQNFEKVESFTSMMMGLFNVYNLTAAIAAVHMTTNKSLN 266

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E +E    V GR E   T S    I VD+AHT + ++ +L++        IIVVFG 
Sbjct: 267 EICEAVENFAGVSGRME---TLSLNPYIIVDFAHTPDGMKEVLQS---FGHKDIIVVFGA 320

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447
           GGDRD+ KRPIMGK+A   A   IVT DNPR EDP+ I  +I+ GI        + NR  
Sbjct: 321 GGDRDKAKRPIMGKVADTFAKHIIVTSDNPRFEDPDLIIEDILEGINDKSKVEVEINRKI 380

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AI+ AI++ ++  V++V GKG E    + + +K    D ++I   L
Sbjct: 381 AIKKAIDLYSENSVILVLGKGDEEYQTIYD-QKLPFSDKEVINSYL 425


>gi|257062775|ref|YP_003142447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
 gi|256790428|gb|ACV21098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
          Length = 493

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 109/492 (22%), Positives = 189/492 (38%), Gaps = 19/492 (3%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ--AIAQGAEAIV 72
           +    +      E  +  ++ DSR  + G +FV        G  F PQ    A  A A  
Sbjct: 2   LADAGVQAQATGEATVQGMTIDSRKAEPGCLFVC------KGAAFKPQYLGGALDAGAAA 55

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVA 130
                + +   A      P +V D+ R+ ++L A+ ++ +    I  + +TGT GKS+ A
Sbjct: 56  YLCDAAAEATLAQAYPQAPHIVTDDVRRAMALLAAVVFDRPDLKIDVVGITGTKGKSTTA 115

Query: 131 SFVQQICQRSGLSSFQIGPT-STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ I   +G     +G   +       ++  TTP    L + L+     G + + +E 
Sbjct: 116 YMMRSILIAAGQEPSILGSIDTDDGVEHFESHNTTPEAPDLWRHLANTVEAGRSRMVMEV 175

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SSHGL   R  G++   G F N+GRDHI   +    + +      +      +  +    
Sbjct: 176 SSHGLKYDRTLGVRFAIGCFLNIGRDHISPVEHP-TFEDYFESKLKLFAQSRTALVNLNS 234

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   + +     +       VG      +   +         T+     + + +      
Sbjct: 235 DMADQVLEAAKASEQLVTFGVGRDDADWNAADLAVEPQGIAFTVCTPTGERERIVLGMAG 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
                  +AA +   +   +   +        VPGR E V +        VDYAH   S 
Sbjct: 295 LFNVENALAAVVMSRMLGVTWDDIRAGLAHVRVPGRMEVVRSADGSVVALVDYAHNELSF 354

Query: 370 EMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +    +++    GR  I VFG  G++ Q +R  + ++A   AD  I T+++P  E  E I
Sbjct: 355 KTFFSSVKEEYPGRKVIAVFGAPGNKAQERRVTLPRVAAGFADHMIFTEEDPAYERVEDI 414

Query: 429 RAEIIHGIPG---FIEKGNRIEAIRTAIEM---LNKQDVLVVAGKGHETVHIVTNGEKKM 482
            AE++   P         +R  A + A +M        V+ +  KG ET     +   ++
Sbjct: 415 CAEMMASTPAGASAEVICDREAACKRAFDMAFEAENGAVVALLAKGDETRQHRGDEFPEV 474

Query: 483 SVDCDIIREILG 494
             D  I REILG
Sbjct: 475 KSDLAIAREILG 486


>gi|315639117|ref|ZP_07894284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
 gi|315480821|gb|EFU71458.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
          Length = 428

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 199/466 (42%), Gaps = 61/466 (13%)

Query: 31  NEVSSDSRHIQAGWIFV-AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             ++ +S   +    F+      K     F  +A+ +GA+                    
Sbjct: 8   TFITDNSSECEKDCFFLSCFQNAK-----FKDEAVKKGAK-------------------- 42

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I+ V+ T+K L +            I+ +TGT+GK++ A+ +  I    G      G 
Sbjct: 43  --IIDVEETKKLLGI-------DETIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGT 93

Query: 150 TSTISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +     +  LTT   +   + L   + +G     +E SSH L Q+R++G++  A 
Sbjct: 94  RGAFINDEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEVSSHALVQNRIEGLEFAAK 153

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTNL +DH+D+H + + Y  AK   F +               +  +     +      
Sbjct: 154 IFTNLTQDHLDFHGSFENYKKAKESFFTDESL-----------KFINKDAFHINFNVKNA 202

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIG 326
            + G +    +  K  A+ N+    +  + + F     L G F +YN L A+      + 
Sbjct: 203 YTYGIENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYNLLAASACVNELVK 262

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            + A +   +     V GR E +        + VD+AHT + +E +L +++      +IV
Sbjct: 263 PNLADLERAISGFGGVCGRVEKIVEG-----VIVDFAHTPDGIEKVLDSLKN---KNLIV 314

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKG 443
           VFG GGDRD+ KR +MGK+    A  AI+T DNPRSED   I  EI+ G       +   
Sbjct: 315 VFGAGGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKNTPLMIE 374

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
           NR  AI  A+E+  + D++++ GKG ET   +  G K    D +++
Sbjct: 375 NRELAIYKALELKKEDDLVIILGKGDETYQEIK-GVKYPFSDKEVV 419


>gi|218661064|ref|ZP_03516994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli IE4771]
          Length = 278

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/275 (48%), Positives = 178/275 (64%), Gaps = 1/275 (0%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T +AY  AKMRLF+ LLPK +PA+I+ADD +S + +K A +AG  V +VG +G ++ L
Sbjct: 1   HPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAIKAAADAGHDVRTVGRKGDYLTL 60

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K+V    +KQ   I +  + F+   PL G+FQV NALVAAGL ++ G++  + +  LEKL
Sbjct: 61  KRVEHFRHKQMAEIHIGDEIFEVDIPLAGDFQVANALVAAGLAMSTGVEPKVAMTALEKL 120

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKR
Sbjct: 121 VGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDRGKR 180

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           PIMG+IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR A+ ML   
Sbjct: 181 PIMGEIACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCASEIADRAIAIREAVAMLTSG 240

Query: 460 DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           D L+VAGKGHE    + +       D   +R+ L 
Sbjct: 241 DTLIVAGKGHEEGQTIGS-VTLPFSDHAEVRKALE 274


>gi|289704960|ref|ZP_06501375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
 gi|289558296|gb|EFD51572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
          Length = 599

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 132/513 (25%), Positives = 204/513 (39%), Gaps = 54/513 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS DSR ++ G ++VA+ G    G  F   A+  GA  ++  +A      +    ++
Sbjct: 69  VTGVSLDSRVVRPGDLYVAVPGAHAHGAAFAATALEAGAVGVLTDAAGRAL-LAGQGLAD 127

Query: 90  TPILVVDNTRKFLSLFASRLYG---KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            P+L VD  R      A+R+YG        ++ VTGT+GK++ +     + +  G  S  
Sbjct: 128 APVLEVDAVRTAAGTVAARVYGGGRDAGPRLVGVTGTNGKTTTSFLAAALLEALGRRSGI 187

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G            + LTTP    L   ++ +  + V    +E SSH +   R+ G++  
Sbjct: 188 VGTILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTAVMEVSSHAVAYQRIAGLRYA 247

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAG 264
              FTNL +DH+D H + Q YF AK  LF+      +   +   +       M RA  A 
Sbjct: 248 VAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPARTDHAVITLDGGEGPRWGVAMARAAGAP 307

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL-------- 316
              L++G                +    ++    D                L        
Sbjct: 308 VTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGLGHRFTLRHAATGRELRASVGLPG 367

Query: 317 ------VAAGLCIAIGIDSALVLE-----------HLEKLHVVPGRFEFVGTNSRGGRIY 359
                  A  + + +       L+                  VPGR E VG         
Sbjct: 368 RFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLAAAVPGRMEVVGRE---PDAV 424

Query: 360 VDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           VD+AH  + +   L+++          GR ++VFG  GDRD+ KRP+MG IA   AD+ I
Sbjct: 425 VDFAHNPDGMVQALRSLADARAAAGMRGRTLIVFGSAGDRDRDKRPVMGAIAARAADVVI 484

Query: 415 VTDDNPRSEDPEKIRAEIIHG----IPGFIEKGNRIEAIRTA----------IEMLNKQD 460
           VTDD P SEDP  IRA I+ G          +  R   I             +E+   QD
Sbjct: 485 VTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRPVVIEEVADRAAAIRRAVELAGPQD 544

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +++AG+GHET     +GE     D   +RE L
Sbjct: 545 GILLAGRGHETTMDY-DGELVPLDDRVALREAL 576


>gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group]
 gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6
           -diaminopimelate ligase [Oryza sativa Japonica Group]
 gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein,
           expressed [Oryza sativa Japonica Group]
 gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group]
          Length = 757

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 114/517 (22%), Positives = 232/517 (44%), Gaps = 42/517 (8%)

Query: 10  DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              EL+++  + P+     ++  +  V  D+  + AG ++V + G +  G   + +A  +
Sbjct: 226 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKR 282

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A+V      ++   A       +++VD+    L +  + LY +  +++  + V GT 
Sbjct: 283 GAVAVVADQTVDIEGTLACRA----LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTD 338

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G ++ A  V+ + +  G+ +  +G        ++        +  PI + + ++ +   G
Sbjct: 339 GVTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                +EA++ G+    +D  I       TN+     +   T + Y N+   LF  ++  
Sbjct: 399 AEAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGK 298
           E    +   D  S             V++  ++ K   +   K      + +V +     
Sbjct: 459 ERHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 518

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +    +   +
Sbjct: 519 ILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELI-DEEQAFGV 577

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+A T  SL  +L  ++ +   RI+ V GC G+R++GKRP+M K+A + +D+ ++T D
Sbjct: 578 IVDHARTPESLSRLLDGVKELGPRRIVTVIGCCGERERGKRPVMTKVAAEKSDVVMLTSD 637

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---------------GNR-------IEAIRTAIEML 456
           NP +EDP  I  +++ G+   +E+               G+R         A+R A+ M 
Sbjct: 638 NPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHDIRRVAVRAAVAMG 697

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + DV+V+ GKG++T  I  + +K+   D +  RE L
Sbjct: 698 EQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 733


>gi|109948221|ref|YP_665449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter acinonychis str. Sheeba]
 gi|109715442|emb|CAK00450.1| murE [Helicobacter acinonychis str. Sheeba]
          Length = 447

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ VTGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIIGVTGTNGKTTTASLMYSLLLDLNKKAALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYGDLEEAMRLECEYFIMEVSSHAIVQERIAGLNFALKILTNITSDHLDFHKSIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   ++     ++  +Q
Sbjct: 184 K---NSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNVKEMALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETITPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA  
Sbjct: 301 AHSKPL---VVVDFAHTTDGMQQVFESFKA---QKITALFGAGGDRDKTKRPKMGAIASC 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGINDPSKVIVEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D +I++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEIVKNY 440


>gi|297625038|ref|YP_003706472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
 gi|297166218|gb|ADI15929.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
          Length = 504

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 148/511 (28%), Positives = 221/511 (43%), Gaps = 32/511 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW------IFVAIVGNKE 54
           MKL  LI           +   +   E ++  +  D+R +          IFVA  G   
Sbjct: 1   MKLAHLIRAALG---PDATWSHLPLPEVEVRRIVQDTRELTPSDPATEPFIFVARRGAAV 57

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DGH F  +A+AQGA A+V   A   +  S   R   P + V + R  L+  A+ LYG   
Sbjct: 58  DGHRFAARAVAQGAVAVVGE-ATPEEQASFAWRHAAPYIQVPDDRAALAQLAATLYGHPS 116

Query: 115 E--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYL 170
                + VTGT GK++ A+ +  + Q    +      G     +        TTP    +
Sbjct: 117 RALFTVGVTGTDGKTTTATLLHHLLQGDRPTGLLSTAGVRLGEAEGGLFGHFTTPEAPEV 176

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + L+   ++G+    +E+SSHG  Q RLD I    G  TNL  +H+D+H T + Y  AK
Sbjct: 177 QRTLAAFVARGLRAAVIESSSHGFAQRRLDAIDYDLGILTNLSPEHLDFHGTFENYRAAK 236

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            +L          A    DD        RA       +            +V  +    +
Sbjct: 237 AQLMARARTSILNA----DDPNYAYFAARARRIITYGVVR---AATWRATEVRELPGALE 289

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++  G+ +    P+ G + VYNAL A       G+  A  L  L     VPGR + V 
Sbjct: 290 WRLTHAGRSYPARLPMVGSYNVYNALAALAAACEAGVPLAGALARLATFPGVPGRMQVVQ 349

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T      + VD+AHT  +LE  L  +R    G++IVV G  G+RD GKR  +G  A   A
Sbjct: 350 TA--PFALVVDFAHTPPALEKALAALRPQVRGKLIVVVGAAGERDPGKRAPLGAAAARGA 407

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLNKQDVL 462
           D+A+ T+++ RSEDPE I A++  G  G        F  + +R  AIR A+ +    D++
Sbjct: 408 DLAVFTEEDARSEDPEAILAQLRAGAQGAGGRLGETFWLEPDRRAAIRRAVTLAEAGDLV 467

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++AGKGHE      + E     +    R  L
Sbjct: 468 LLAGKGHERTLERRD-ETLPWDEVAEARRAL 497


>gi|154174185|ref|YP_001409125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
 gi|153793058|gb|EAT99621.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
          Length = 432

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 199/473 (42%), Gaps = 62/473 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           V+ +S   + G  FV     +   +  F   A+ +GA+ I +     + +    I     
Sbjct: 10  VTDNSNECERGCFFV-----QTHANSKFSQDAVKKGAKLIGLEECKKILNIDENI----- 59

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                                    I+ +TGT+GK++ A+ + +  +  G      G   
Sbjct: 60  ------------------------KIVGITGTNGKTTTAAAIYETLRELGHKCALSGTRG 95

Query: 152 TI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +  LTT + +     L   S +G  +  +E SSH +DQ R++ +K     F
Sbjct: 96  AFIEGERIDEKALTTSAILQTLGYLKAASQRGCKYFIMEVSSHAIDQKRIESLKFALKIF 155

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL +DH+DYH++ Q       R+       +S  +I  DD   K   K A+    +  +
Sbjct: 156 TNLTQDHLDYHKSMQ----EYARVKSSFFEDDSLKLINIDDGGIKFNPKNAYTYSLKKPA 211

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGID 328
                 +     + A        I     D     PL GEF +YN + A   + +    +
Sbjct: 212 SFAPVAYGLKGGIDA-------VIKTPNGDVQIDSPLQGEFNLYNLIAALGAVYLLAKPE 264

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           ++ + + + K   V GR E V +      + VD+AHT + +E +L  +R +    +IV+F
Sbjct: 265 NSKLSKAISKFSGVDGRVEVVSSEPL---VIVDFAHTPDGIEKVLNALRHL---NLIVIF 318

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNR 445
           G GGDRD  KRP MG IA   A I IVT DNPRSE+PE I  EI  G+          +R
Sbjct: 319 GAGGDRDNTKRPKMGAIAQRYAQICIVTSDNPRSEEPEAIIDEICAGMRMDESVSRISDR 378

Query: 446 IEAIRTA---IEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            +AI      ++ L     LV+ GKG E    +  G K    D +++ + L L
Sbjct: 379 KKAIELGLGRLKELGAGWALVILGKGDEEYQEIK-GVKHPFSDKEVVLKALAL 430


>gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC
           35896]
          Length = 510

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 103/490 (21%), Positives = 208/490 (42%), Gaps = 42/490 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L+          +  +     + +I+ ++  S  ++   +FV I G K DGH ++
Sbjct: 1   MKLSKLLQNV------SVIEYKNVDMDLEISSLAYHSAKVEQNGLFVCIKGYKADGHKYL 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A+   A   VV +   +         + P + V+++R  L+  +S  Y    + +  +
Sbjct: 55  ASAVEHNAIVAVVETFQDI---------DIPQVKVEDSRIALATMSSNYYDNPSKKMTVI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYL 177
            +T T+GK++ A  V ++ +++   +  IG     S +    + LTTP  + L K ++ +
Sbjct: 106 GITATNGKTTTAFMVDEVLRKAKKKTGIIGTVMIRSLNEVIPSVLTTPESLDLQKYMAMM 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             QGVTH+++E SS  L+ HR+ G+      F N+ RDHID H + + YF          
Sbjct: 166 VEQGVTHLTMEVSSSALELHRVHGVDFDFVCFNNISRDHIDLHGSFEDYFQ-IKSTLIRG 224

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKVCAIHNKQ 289
           +   + A+I ADD+   ++++   N          +G            +     + N  
Sbjct: 225 MKPSAKAVINADDSLLHDLIQEKQNQVITYSVESNRGDLYCTQLDLSTGIANWKIVPNPT 284

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           + T+S+   +      +PG   VYNA+ A  LC+   ID   + + L     V  RFE +
Sbjct: 285 KSTLSLLNSEVKIALSVPGYHSVYNAMAAMELCLLCQIDIDTIQDGLHSFKGVERRFELI 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   I  D+   + ++ + L+ ++ +   ++  ++   G R         +     
Sbjct: 345 YDKEFK--IIDDHFANTGNIRVTLETLKKMKYEQLHFIYAIRGSRGVVVNRENAEEICSG 402

Query: 410 ----------ADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEML 456
                     A  ++  VT+ +  +++   +  +I++     +    +  EAI   ++ +
Sbjct: 403 IENLPLKTFVATKSVHHVTEKDKVTQEEITVFQDIMNCCERTVPIYDDLEEAIAFVLKEV 462

Query: 457 NKQDVLVVAG 466
              DV+++AG
Sbjct: 463 QPGDVILLAG 472


>gi|152990002|ref|YP_001355724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
 gi|151421863|dbj|BAF69367.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
          Length = 430

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 24/385 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKA 173
             + VTGT+GK++ A+ +       GL +   G         Q     LTTP  +     
Sbjct: 57  KTIGVTGTNGKTTTAAAIYSYLNDLGLKAALQGTRGFFIEDEQLEKKSLTTPPILQTLYH 116

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +     QG T+  +E SSH + Q+R++ ++     FTN+ +DH+DYH+T Q Y   K   
Sbjct: 117 MYTAKQQGATYFVMEVSSHAIAQNRIEDLQFALKVFTNISQDHLDYHKTMQNYIATKSSF 176

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       +        +  K          +   +    +     ++ N     +
Sbjct: 177 -----------FMDEGSKLINKDDKHIQYNPKGARTYSVEELATYQILAFSMQNGISAVL 225

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               +  DF  P+ G F +YN   A   + +   +    + E  E    V GR + +   
Sbjct: 226 RFGNEMIDFHAPMIGLFNLYNVTAAISAVHMLTNLPLQQICEVTEHFAGVKGRMQIL--- 282

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    I VD+AHT + ++ + ++       +++ +FG GGDRD+ KR +MG +A      
Sbjct: 283 NEEPLIIVDFAHTPDGMQKVFES---FPGKKLVAIFGAGGDRDRSKRALMGNVASRFCTK 339

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +T DNPRSEDP++I  +I  GI       +  +R EA+  A   L K ++L++ GKG 
Sbjct: 340 IYLTSDNPRSEDPKQIIEDIAKGIETDVFVEKIVDRKEAVEKAFHSLQKDEILLILGKGD 399

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E      NG K    D +++ +I+ 
Sbjct: 400 EEYIE-QNGTKIPYSDVEVVTDIIE 423


>gi|167614201|gb|ABZ89704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 381

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 105/382 (27%), Positives = 177/382 (46%), Gaps = 14/382 (3%)

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T+G ++V   +  +    G  +  +G             + TT S I++   LS +  + 
Sbjct: 1   TNGTTTVTQLINLLSNLLGQKTATMGTLGNGFHDNLYPTKNTTSSSIFIHSFLSQVYKKK 60

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              +++E SSHGL Q+R+  I      FTNL +DH+DYHQ  + Y  AK  LF +   + 
Sbjct: 61  AKLITMEVSSHGLIQNRVKNIPFYITIFTNLTQDHLDYHQNMEQYEAAKWLLFSK--HQV 118

Query: 242 SPAIIYADDAYSKEVMKRAHNAG------CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              I+ A+D Y K+ +K+  N           +   Y  K+++   +   +N   +    
Sbjct: 119 QKIILNANDKYGKKWLKKLFNYYTVAVTIKNSIQKKYSTKWLNATNIKYYNNYVNIHFES 178

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                +    L G+F V N L++    + +G   + ++    K+  + GR +    N++ 
Sbjct: 179 SWGSSEISSCLIGDFNVINLLLSVAALLELGHALSDIVNICNKVQPINGRMQIFTKNNKP 238

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               +DYAHT ++L+  L  IR      I  +FGCGG++D+ KR IMG IA  +++  I+
Sbjct: 239 IF-IIDYAHTPDALQKTLNAIRLHYKRYIWCIFGCGGEKDKTKRAIMGSIAEKMSNQVII 297

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
           T+DNPR+E  + I  +I+ G           NR +AI  A        ++V+AGKGHE  
Sbjct: 298 TNDNPRNEKEQNIIQDILSGCQKKNQIFVIPNRKKAISYAYFKARYNHIIVIAGKGHEEK 357

Query: 473 HIVTNGEKKMSVDCDIIREILG 494
            I+ N       D   +  +L 
Sbjct: 358 QIIRNRSIVY-SDKKTVLNLLE 378


>gi|281492399|ref|YP_003354379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376063|gb|ADA65554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 483

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 102/499 (20%), Positives = 194/499 (38%), Gaps = 34/499 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F E+ +    +    +E   +++S DSR      +F A  G       ++  
Sbjct: 9   EILKKDNNFREISSAGEYYFNWLKEVNFDQLSYDSRKSTENTLFFA-KGLNFK-KEYLTD 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
            +   A   V    Y +           P ++V + ++ ++L A+  Y         LA+
Sbjct: 67  -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAASFYDFPQNKLKTLAL 114

Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++ A F + I  + +G  +  +    T+        + LTTP  + L + ++  
Sbjct: 115 TGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ G+    G F N+  DHI   +              +L
Sbjct: 175 LTTGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVE--HPTLEDYFYCKRQL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      +  ++  +   + +            G   +   ++                 
Sbjct: 233 LKNSRYFVANSEMNHFAIIKEELKERKIPHAFYGADSENKIIESKGLHFVTDGSVSGAFD 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F          A  A G  +    D          L VVPGR E + T   G  
Sbjct: 293 IRLLGRFNQENALATALATKALGASLENIHD-------GLALAVVPGRMELL-TAKNGAH 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416
           IY+DYAH   SLE +++ +    +G++++V G  G++ + +R   G++      +  I+T
Sbjct: 345 IYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVIEKHPRLDVILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNK-QDVLVVAGKGHETVHI 474
            D+   EDP+ I  EI   +   ++   +R  AI+ A+       D +++AGKG +   +
Sbjct: 405 TDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKGTDMFQL 464

Query: 475 VTNGEKKMSVDCDIIREIL 493
                +    D    ++ L
Sbjct: 465 KDGKRQPYIGDAAAAQKYL 483


>gi|15646103|ref|NP_208285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 26695]
 gi|8134572|sp|O26027|MURE_HELPY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2314673|gb|AAD08535.1| UDP-MurNac-tripeptide synthetase (murE) [Helicobacter pylori 26695]
          Length = 447

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 101/429 (23%), Positives = 184/429 (42%), Gaps = 20/429 (4%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSV 129
           V+ +   +      +      L+ +     L  +   +         I+ +TGT+GK++ 
Sbjct: 24  VLENPKEILFVKTPLNEKYSHLIAEKNLAILDFNELKNYF--DFKIKIVGITGTNGKTTT 81

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           AS +  +       +  +G       +   ++  LTTP+ + L   L         +  +
Sbjct: 82  ASLMYSLLLDLNKKTALLGTRGFFINNERIKEKGLTTPTLLELYSDLEEAVRLKCEYFIM 141

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH + Q R+ G+       TN+  DH+D+HQ+ + Y +AK         +    I  
Sbjct: 142 EVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQSIENYRDAK---NSFFKDEGLKVINR 198

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +       +     A  +   +  Q   ++     ++  +Q +      +      PL 
Sbjct: 199 DETNALFNPVNAHTYALDKKAHLNVQAFSLNPSISASLCYQQDLRDPNFKEIALMHSPLL 258

Query: 308 GEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           G + +YN L       +   +    ++  LE  + V GR E V +      + VD+AHT 
Sbjct: 259 GRYNLYNILAGVLGVKLLTQLPLETIVPLLENFYGVKGRLEIVHSKPL---VVVDFAHTI 315

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           + ++ + ++ +     +I  +FG GGDRD+ KRP MG IA   A   I+T DNPRSE+ E
Sbjct: 316 DGMQQVFESFKN---QKITALFGAGGDRDKTKRPEMGAIASYYAHKIILTSDNPRSENEE 372

Query: 427 KIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            I  +I+ GI      I + +R +AI  A+E L   +VL++ GKG E + I  + +    
Sbjct: 373 DIIKDILKGINDSSKVIVEKDRKKAILNALENLKDDEVLLILGKGDENIQIFKD-KTIFF 431

Query: 484 VDCDIIREI 492
            D ++++  
Sbjct: 432 SDQEVVKSY 440


>gi|261838768|gb|ACX98534.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori 51]
          Length = 447

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  NFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAVRLKCEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHESIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    ++  LE  + V GR E 
Sbjct: 241 DLRNPNFKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL+V 
Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLVL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus
           EPS]
 gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           EPS]
          Length = 517

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 135/501 (26%), Positives = 213/501 (42%), Gaps = 51/501 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR + AG  F+A  G   DG   +  A+AQGA A +V         +     +  I
Sbjct: 22  LHADSRPVGAGDGFIAWPGAATDGRKHVAAALAQGAAACLVEHEGVD---AFGFGEDDRI 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQ--------------- 135
                 +      AS  Y       ++LAVTGT+GK+S A ++ +               
Sbjct: 79  ASYPGLKAATGPIASAFYDNPSALLDVLAVTGTNGKTSTAWWLAESLSTLRAAGGVRAMR 138

Query: 136 ----ICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                 + +      +G     +        LTTP P+ +   L  L  +G    ++EAS
Sbjct: 139 PDGTTERSAPSPCAVMGTLGIGVPPDLTYTGLTTPDPVMMQGELRALVERGFGACAIEAS 198

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI---IY 247
           S G+ + RLDG ++    FTN  +DH+DYH +  AY+ AK  LF     + +      ++
Sbjct: 199 SIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWEAKAELFRWPGLRAAVINIDDMH 258

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306
                +  V           +S G +   +  + +       Q +++ +G          
Sbjct: 259 GASLCANLVDAGIGALDVWTVSAGGKPARLVARDIGYDAQGLQFSVTEQGSVSVERLSTG 318

Query: 307 -PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G++ V N L   G   A+G+  +  +     L  VPGR E V          VDYAHT
Sbjct: 319 LIGQYNVANLLGVLGTLRALGLSLSRAVAACANLTSVPGRMERVSVGGNAPLAVVDYAHT 378

Query: 366 SNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++L+  L  +R +   R   +  +FGCGGDRD  KRP+M  +A   AD  IVT DNPRS
Sbjct: 379 PDALDKALAGLRPLAQQRGGALWCLFGCGGDRDPIKRPMMAAVAERQADHVIVTSDNPRS 438

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIR----------TAIEMLNKQDVLVVAGKGHETV 472
           E P+ I ++++ G        +R +A +           AI     QDV+++AGKGHE  
Sbjct: 439 EKPDAIISQVLRGF-------SRSDAAQVQPDRAAAIADAIAQAAPQDVVLIAGKGHEAW 491

Query: 473 HIVTNGEKKMSVDCDIIREIL 493
             +  G++    D     + L
Sbjct: 492 QEIA-GQRLPFSDKTHALDAL 511


>gi|322379099|ref|ZP_08053501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter suis HS1]
 gi|321148471|gb|EFX42969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter suis HS1]
          Length = 446

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 106/475 (22%), Positives = 189/475 (39%), Gaps = 57/475 (12%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +S D+R +    +                          +V +  + +     ++ +
Sbjct: 13  FTHLSDDTRELDQDTL--------------------------LVQTPTNTRFVQQYLQEH 46

Query: 90  -TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P +     +K+               I+ +TGT+GK++ AS +  +    G S   +G
Sbjct: 47  RVPCIHAKELKKYF---------NTDVRIIGITGTNGKTTTASLIYSLLLDLGYSCALLG 97

Query: 149 PTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 + +      LTTPS + +   +   +++G  +  +E SSH ++Q R+ G+   A
Sbjct: 98  TRGFFFNDSCLKQKGLTTPSLLEVYANIEQATNRGAHYFVMEVSSHAINQERILGLDFSA 157

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAK--MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              TN+  DH+DYH   + Y   K      E L            +  +       H   
Sbjct: 158 KVITNITSDHLDYHGNLEEYRRVKNAFLSDESLKIINRDDAFVRFNPKNAYGYAIEHKTH 217

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-I 323
             V +   QG   H+         Q        ++     PL G   +YN L       +
Sbjct: 218 LSVNAYSLQGLSAHICFTEKPGRYQNSEF----EEGLLYSPLVGRHNLYNLLAGILCVKL 273

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                   + + +     V GR E V        + VD+AHT++  E I  + +   + +
Sbjct: 274 LTKKSLKTLCDLIPHFLGVKGRMEVVHEQPL---VIVDFAHTADGFEQIFNSFK---TRK 327

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PG 438
           I  +FG GG+RD+ KRP+MG IA   A    +T DNPR E+P  I  +I+ GI       
Sbjct: 328 IKALFGAGGNRDKSKRPLMGAIACKYASKVYITSDNPRYEEPMAIMQDILVGIAVEKRDK 387

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            I + +R +AI  A++ L   ++L++ GKG E+V I+ + +     D ++++   
Sbjct: 388 VILEIDRYKAICLALQELKSDEILLILGKGDESVQIIGD-KTIPFDDTEVVKTYF 441


>gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis
           str. Sterne]
 gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
          Length = 401

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 111/411 (27%), Positives = 179/411 (43%), Gaps = 34/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
            +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K  
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSL 222

Query: 233 LFEE-----LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           LF           +  A++ ADD   +   K               G  +  K +     
Sbjct: 223 LFARLGNNLSTIDKKIAVLNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPK 280

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +S    + +    L G F VYNAL A  + +  GI    + + L  L  + GR E
Sbjct: 281 GIRFLVSSFNGEIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRME 340

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
            +   ++   + VDYAHT ++LE +L  IR    G+II VFGCGGDRD  K
Sbjct: 341 II-DENQDFLVIVDYAHTPDALENVLSTIREFAKGKIITVFGCGGDRDAKK 390


>gi|239813921|ref|YP_002942831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Variovorax paradoxus S110]
 gi|239800498|gb|ACS17565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           S110]
          Length = 520

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 136/505 (26%), Positives = 212/505 (41%), Gaps = 54/505 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR + AG  F+A  G   DG   +  A+AQGA A +V    +    +     +  I
Sbjct: 22  LHADSRPVGAGDGFIAWPGAATDGRRHVASALAQGAAACLVEQQGAE---AFGFDGDERI 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQI-------------- 136
                 +      AS  Y        +LAVTGT+GK+S A ++ +               
Sbjct: 79  ASYPGLKAATGPIASAFYDNPSAALEVLAVTGTNGKTSTAWWLAESLSTLAVPGGVRAPR 138

Query: 137 -----CQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                 +        +G     +        LTTP P+ + + L  L  +G    ++EAS
Sbjct: 139 LDGSAERGVPSPCAVMGTLGIGVPPELVYTGLTTPDPVMMQRELRALVERGFGACAIEAS 198

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---Y 247
           S G+ + RLD  ++    FTN  +DH+DYH +  AY+ AK  LF     + +   I   +
Sbjct: 199 SIGIAERRLDSARIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFRWPGLRAAVINIDDVH 258

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL- 306
                +  +           +S       +  + V       + +++    D        
Sbjct: 259 GASLCANLLEAGIGALDVWTVSAAGAPARLMARDVGYDAQGLRFSVAEHDNDAVERMSTG 318

Query: 307 -PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDY 362
             G++ V N L   G   A+G+  A  +    +L  VPGR E VG            VDY
Sbjct: 319 LIGQYNVANLLGVLGTLRALGLSLAQAVAACSRLTSVPGRMERVGAADANAAAPLAVVDY 378

Query: 363 AHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           AHT ++L+  L  +R +   R   +  VFGCGGDRD  KRP+M  +A   AD  +VT DN
Sbjct: 379 AHTPDALDKALAGLRPLAQQRGGALWCVFGCGGDRDPIKRPMMAAVAERQADRVVVTSDN 438

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR----------TAIEMLNKQDVLVVAGKGH 469
           PRSE+P+ I ++++ G+        R EA +           AI     QDV+++AGKGH
Sbjct: 439 PRSENPDAIISQVLLGLA-------RPEAAQVQPDRAAAIADAIAQAAPQDVVLLAGKGH 491

Query: 470 ETVHIVTNGEKKMSVDCDIIREILG 494
           E    +  G++    D     + L 
Sbjct: 492 EAWQEIA-GQRIPFSDRIHALDALS 515


>gi|317014909|gb|ADU82345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Gambia94/24]
          Length = 447

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 166/386 (43%), Gaps = 14/386 (3%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIAQKRIAGLDFALKILTNITSDHLDFHKSLENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F++             +A    +  R +    +                   + + 
Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQD 241

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +++         L             G+ +   +    +   LE  + V GR E V
Sbjct: 242 LRDPNLKETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIV 301

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA   
Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ G
Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEVLLILG 415

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KG E   I  + +     D +++++ 
Sbjct: 416 KGDENTQIFKD-KTIFFSDQEVVKDY 440


>gi|317011629|gb|ADU85376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori SouthAfrica7]
          Length = 447

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 166/386 (43%), Gaps = 14/386 (3%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIIGITGTNGKTTTASLMYSLLLDLNKKAALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLECEYFIMEVSSHAIVQERIAGLDFALKILTNITSDHLDFHKSLENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F++             +A    +  R +    +                   +   
Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHD 241

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +V+         L             G+ +   +    +   LE  + V GR E V
Sbjct: 242 LRDPNVKETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEIV 301

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + VD+AHT++ ++ + ++ ++    +I  +FG GGDRD+ KRP MG IA   
Sbjct: 302 HPKPL---VVVDFAHTTDGMQQVFESFKS---QKITALFGAGGDRDKTKRPKMGAIASYY 355

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ G
Sbjct: 356 AHKIILTSDNPRSENEEDIIKDILKGINDLSKVITEKDRKKAILNALENLKDDEVLLILG 415

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KG E + I  + +     D +++++ 
Sbjct: 416 KGDENIQIFKD-KTIFFSDQEVVKDY 440


>gi|315453540|ref|YP_004073810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
 gi|315132592|emb|CBY83220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
          Length = 442

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 110/430 (25%), Positives = 179/430 (41%), Gaps = 33/430 (7%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 +  I  +TP +     + +L              I+ +TGT+GK++ A+ +  +
Sbjct: 30  VKTPTNARFIPPHTPYIEASELKHYL---------NVNIPIIGITGTNGKTTTAALIAHL 80

Query: 137 CQRSGLSSFQIGPTSTISSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            Q  G S   +G        AQ     LTTPS + L   ++   ++G     +E SSH +
Sbjct: 81  LQALGHSCALLGTRGFFIHNAQVKPKGLTTPSLLELYSDIARARAEGAKFFVMEVSSHAI 140

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q R+ G++  A   TN+  DH+DYH   +        +  + L  E   I+  DD + +
Sbjct: 141 AQERILGLEFAAKVHTNITSDHLDYHGDIE----TYRAIKNQFLSDEGLKIVNLDDPHVR 196

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-----QVTISVEGKDFDFLFPLPGE 309
                A+   C   +      +    ++ A          +   +   +      PL G 
Sbjct: 197 FNPTNAYGYACERKTHLSVNAYSLQPEISAHVEFHADPRARRDPNSNAEMGIVHAPLMGL 256

Query: 310 FQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
             ++N L A     A        +   L     V GR E V        + VD+AHT++ 
Sbjct: 257 HNLHNLLGALLCVRALTKQPLESLCSLLGDFPGVEGRMEVVHQ---NPLVVVDFAHTADG 313

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              I  + +     +I VVFG GGDRD+ KRP+MG++A   A  + +T DNPRSE+P  I
Sbjct: 314 FVQIFNSFKA---QKIKVVFGAGGDRDKSKRPLMGQVASTHALKSYITSDNPRSEEPLAI 370

Query: 429 RAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
             +I+ GI        + + +R  AI  A+  L   +VL++ GKG E V I+        
Sbjct: 371 IEDILSGIASELRTRVVVEPDRKRAIELALSELQSDEVLLILGKGDECVQIIGQAH-LPF 429

Query: 484 VDCDIIREIL 493
            D  ++R   
Sbjct: 430 DDRALVRNFF 439


>gi|268680557|ref|YP_003304988.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618588|gb|ACZ12953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 437

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 113/379 (29%), Positives = 175/379 (46%), Gaps = 24/379 (6%)

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIYLAKALSYLSSQG 181
           +GK++ A+ +  +    G      G      +    +D  LTTP  +   K L     +G
Sbjct: 73  NGKTTTAAAIYSLLLDLGQKVGLQGTRGCFINEKRVEDKSLTTPPILQTIKNLKMAVDEG 132

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +  +E SSH + Q+R+DG+       TN+ +DH+D+H+T   Y   K R FE+   K 
Sbjct: 133 CEYFVMEVSSHAIVQNRIDGLFFALKILTNVTQDHLDFHKTIDEYIAVKSRFFEDESLK- 191

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               +   D                  + G +    +     ++       I+ + K +D
Sbjct: 192 ----LINSDERHIRF------NRINAFTYGIEHPATYKVLAYSLKEGISAAIAKKEKVYD 241

Query: 302 FLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           F   L G F +YN L A   + +        + E +     V GR + V   S+   + V
Sbjct: 242 FESSLHGFFNLYNLLAAISAVDLLHVAGMEEICEAVSHFGGVEGRMQVV---SQDPLVIV 298

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           D+AHT + +E +L++++       IVVFG GGDRD+ KRP MG +A   A   IVT DNP
Sbjct: 299 DFAHTPDGMEKVLESMKD---KNCIVVFGAGGDRDRTKRPKMGAVAERYAKWMIVTSDNP 355

Query: 421 RSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           RSE+P+ I  EI+ GI        K +R +AI  A+ M  K DV+++ GKG ET   V  
Sbjct: 356 RSENPDAIIEEIVAGIQRTESLHVKVDRYQAIEEALGMQKKSDVVLILGKGDETYQEVA- 414

Query: 478 GEKKMSVDCDIIREILGLI 496
           G K    D +++ EIL  +
Sbjct: 415 GVKYPFDDRNVVLEILARL 433


>gi|254479547|ref|ZP_05092864.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034515|gb|EEB75272.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 260

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 137/258 (53%), Gaps = 8/258 (3%)

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A +   D     +M  +         +      +  K++    +  +  + ++ K 
Sbjct: 2   MAKKASVINIDDKYSSMMIESSKGKVLTYGIKDFAYVM-AKEIKNSLSGVKFKVQIQDKK 60

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    +PG F VYNAL A  +   +GI    V E L  + V  GRFE V T      ++
Sbjct: 61  EEISLKIPGLFSVYNALAAITVADFLGIPLRSVREALSHVTV-KGRFEPVETGR-DFYVF 118

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           +DYAHT + +  I++ ++   +GR I+VFG GGDRD+ KRP+MG++A   AD  I+T DN
Sbjct: 119 IDYAHTPDGIRNIMEALKEYEAGRKILVFGAGGDRDKSKRPLMGEVAGKYADFCILTSDN 178

Query: 420 PRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           PRSE+P++I A+I  GI      ++   +R EAIR A+    K DV+++AGKGHET  I+
Sbjct: 179 PRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKGHETYQII 238

Query: 476 TNGEKKMSVDCDIIREIL 493
            + +     + +I++EIL
Sbjct: 239 GD-KVIPFDEREIVKEIL 255


>gi|332674264|gb|AEE71081.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pylori 83]
          Length = 447

 Score =  199 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYNDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG+IA  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEIASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|188528265|ref|YP_001910952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Shi470]
 gi|188144505|gb|ACD48922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Shi470]
          Length = 447

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 VHSKPL---VIVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++I+  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVIKSY 440


>gi|261840170|gb|ACX99935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 52]
          Length = 447

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPFISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|217031839|ref|ZP_03437342.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128]
 gi|298735536|ref|YP_003728057.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Helicobacter pylori B8]
 gi|216946491|gb|EEC25093.1| hypothetical protein HPB128_199g47 [Helicobacter pylori B128]
 gi|298354721|emb|CBI65593.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Helicobacter pylori B8]
          Length = 447

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 173/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHESIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRDPNLKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG +A  
Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPEMGAVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI +A+E L   +VL++ 
Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISNSSKVVVEKDRKKAILSALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|208435362|ref|YP_002267028.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27]
 gi|208433291|gb|ACI28162.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori G27]
          Length = 447

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 165/386 (42%), Gaps = 14/386 (3%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ VTGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGVTGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y +A
Sbjct: 124 LYSDLEEAVRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F++             +A    +  R +    +                   + + 
Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPSISASLCYQQD 241

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +++         L             G+ +   +    ++  LE  + V GR E V
Sbjct: 242 LRDPNLKEVALMHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGVKGRLEVV 301

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA   
Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ G
Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEKDRKKAILNALENLKDDEVLLILG 415

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KG E   I  + +     D ++++  
Sbjct: 416 KGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|297380651|gb|ADI35538.1| UDP-N-acetylmuramyl-tripeptide synthetase [Helicobacter pylori
           v225d]
          Length = 447

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG+IA  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEIASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEYIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D +++++ 
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKDY 440


>gi|254780004|ref|YP_003058111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori B38]
 gi|254001917|emb|CAX30170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Helicobacter pylori
           B38]
          Length = 447

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 167/386 (43%), Gaps = 14/386 (3%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDTQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F++             +A    +  R +    +                   + + 
Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLTPFISASLCYQQD 241

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +++         L             G+ +   +    +   LE  + V GR E V
Sbjct: 242 LRDPNLKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIV 301

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA   
Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ G
Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAILNALENLKDDEVLLILG 415

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KG E + I  + +     D +I+R+ 
Sbjct: 416 KGDENIQIFKD-KTIFFSDQEIVRDY 440


>gi|15673788|ref|NP_267963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13878593|sp|Q9CEN1|MURE_LACLA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|12724832|gb|AAK05904.1|AE006410_6 UDP-MurNac-tripeptide synthetase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407294|gb|ADZ64365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 483

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 102/499 (20%), Positives = 194/499 (38%), Gaps = 34/499 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F E+ +    +    +E   +++S DSR      +F A  G       ++  
Sbjct: 9   EILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTENTLFFA-KGLNFK-KEYLTD 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
            +   A   V    Y +           P ++V + ++ ++L A+  Y         LA+
Sbjct: 67  -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAASFYDFPQNKLKTLAL 114

Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++ A F + I  + +G  +  +    T+        + LTTP  + L + ++  
Sbjct: 115 TGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            + G+TH+ +E SS      R+ G+    G F N+  DHI   +              +L
Sbjct: 175 LTNGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVE--HPTLEDYFYCKRQL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      +  ++  +   + +            G   +   ++                 
Sbjct: 233 LKNSRYFVANSEMNHFAIIKEELKERKIPHAFYGADSENKIIESKGLHFVTDGSVSGAFD 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 F          A  A G  +    D          L VVPGR E + T   G  
Sbjct: 293 IRLLGRFNQENALATALATKALGASLENIHD-------GLALAVVPGRMELL-TAKNGAH 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416
           IY+DYAH   SLE +++ +    +G++++V G  G++ + +R   G++      +  I+T
Sbjct: 345 IYIDYAHNGLSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVIEKHPRLDVILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNK-QDVLVVAGKGHETVHI 474
            D+   EDP+ I  EI   +   ++   +R  AI+ A+       D +++AGKG +   +
Sbjct: 405 TDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKGTDMFQL 464

Query: 475 VTNGEKKMSVDCDIIREIL 493
                +    D    ++ L
Sbjct: 465 KDGKRQPYIGDTAAAQKYL 483


>gi|317182699|dbj|BAJ60483.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F57]
          Length = 447

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG+IA  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEIASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|217033874|ref|ZP_03439298.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10]
 gi|216943637|gb|EEC23082.1| hypothetical protein HP9810_870g6 [Helicobacter pylori 98-10]
          Length = 447

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +             A  +   +  Q   ++     ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPTNAHTYALDKKAHLNIQAFSLNPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILDALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|207092786|ref|ZP_03240573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPKX_438_AG0C1]
          Length = 447

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 173/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLGCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHKSIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA  
Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHQIILTSDNPRSENEEDIIKDILKGINDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D +++R+ 
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVRDY 440


>gi|315585881|gb|ADU40262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Helicobacter pylori 35A]
          Length = 447

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|15612452|ref|NP_224105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori J99]
 gi|8134585|sp|Q9ZJC6|MURE_HELPJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4156007|gb|AAD06968.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
          Length = 447

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 164/386 (42%), Gaps = 14/386 (3%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G           ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFIDDKHIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y +A
Sbjct: 124 LYSDLEEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F++             +A    +  R +    +                   +   
Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQHD 241

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +++         L             G+ +   +    +   LE  + V GR E V
Sbjct: 242 LRDPNLKETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIV 301

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA   
Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ G
Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGINNSSKVIVEKDRKKAILNALENLKDDEVLLILG 415

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KG E + I  + +     D +++++ 
Sbjct: 416 KGDENIQIFKD-KTIFFSDQEVVKDY 440


>gi|108563844|ref|YP_628160.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPAG1]
 gi|107837617|gb|ABF85486.1| UDP-MurNac-tripeptide synthetase [Helicobacter pylori HPAG1]
          Length = 447

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 173/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAVRLKCEYFIMEVSSHAIVQKRVAGLDFALKILTNITSDHLDFHKSIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +   ++   LE  + V GR E 
Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEVIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA  
Sbjct: 301 VHSKPL---VIVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHQIVLTSDNPRSENEEDIIKDILKGISDSSKVIVEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D +++++ 
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKDY 440


>gi|317178199|dbj|BAJ55988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F16]
          Length = 447

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTAFLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG+IA  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEIASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|308064254|gb|ADO06141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Sat464]
          Length = 447

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDESLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPDLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 VHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E+  I  + +     D ++++  
Sbjct: 415 GKGDESTQIFKD-KTIFFSDQEVVKSY 440


>gi|308062758|gb|ADO04646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Cuz20]
          Length = 447

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNSLFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLALEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 VHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E+  I  + +     D ++++  
Sbjct: 415 GKGDESTQIFKD-KTIFFSDQEVVKSY 440


>gi|317010132|gb|ADU80712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori India7]
          Length = 447

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/386 (23%), Positives = 164/386 (42%), Gaps = 14/386 (3%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R  G+       TN+  DH+D+HQ  + Y +A
Sbjct: 124 LYGDLEEAVRLKCEYFIMEVSSHAIVQKRTAGLDFALKILTNITSDHLDFHQNIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F++             +     +    +    +                   + + 
Sbjct: 184 KNSFFKD--EGLKVINRDETNVLFNPINAHTYALDKKAHLNVQAFSLNPFISASLCYQQD 241

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              ++++         L             G+ +   +   ++   LE  + V GR E V
Sbjct: 242 LRDLNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEVIAPLLENFYGVKGRLEIV 301

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA   
Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ G
Sbjct: 356 AHQIILTSDNPRSENEEDIIKDILKGISNSSKVIIEKDRKKAILNALENLKDDEVLLILG 415

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KG E + I  + +     D ++++  
Sbjct: 416 KGDENIQIFKD-KTIFFSDQEVVKSY 440


>gi|210135661|ref|YP_002302100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori P12]
 gi|210133629|gb|ACJ08620.1| UDP-murnac-tripeptide synthetase [Helicobacter pylori P12]
          Length = 447

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 174/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y +A
Sbjct: 124 LYSDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K              I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFRDDGLKVINRDETNALFNPINVHTYALDKKAHLNVQAFSLTPFISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    ++  LE  + V GR E 
Sbjct: 241 DLRDPNLKEIALMHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVIIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E++ I  + +     D ++++  
Sbjct: 415 GKGDESIQIFKD-KTIFFSDQEVVKSY 440


>gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 518

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 119/524 (22%), Positives = 203/524 (38%), Gaps = 52/524 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           L+ L+    PEL  + +       + +   I+ ++ +S+ +  G IFVA  G K D H +
Sbjct: 13  LKKLLQNTSPELFTEFADLGTTGTDIEGVTISGITDNSKEVTPGKIFVACQGTKVDAHDY 72

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +AIA GA  +++  A  +        S  P   V N RK L+  AS  Y      ++ 
Sbjct: 73  IEEAIANGASTVILERADYIDKVK---DSAIPYFKVRNGRKTLAKLASTFYDHPSHRLIV 129

Query: 120 VTGTSGKSSVASF--VQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
              T       +   +  I  + G+ S  IG  +  I+    D++LTTP    L   +  
Sbjct: 130 TGITGTNGKTTTTTLIDYIINQLGVKSGLIGTVNCKINGEEFDSKLTTPPATELYSLIEK 189

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +  + V +++ E SSHGL Q R+  I       TN+  DH+D+H +   YF +K + F+ 
Sbjct: 190 MVQKEVKYLTKEVSSHGLKQDRVSAINFDIAGITNISYDHMDFHDSWDDYFKSKTKFFQM 249

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L P     +    D  +   M     +      +   G  I  + V     +   T  ++
Sbjct: 250 LSPDSISVL--NADDPNAISMGDKTRSKVITYGISSPGAMITAENVDLKPFETSFTYQIK 307

Query: 297 GK------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +              +    +PG+  +YN L+A  +CI  G D   V++  E+   +  
Sbjct: 308 EELPTVTNKPVRPQSHNLKIRMPGKHNIYNTLLAISVCIMAGFDPEQVIKTAEQFPGLFR 367

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +  N     I  D AH   S+  + + I  +   R+++VF   G R         +
Sbjct: 368 RLEVIYKN--SFTIIDDCAHNPASIRSVFETISQLPFNRLVIVFAIRGSRGDQINLENSQ 425

Query: 405 IALDLADI------AIVTDDNPR--------SEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
             +   +        I T  +          SE    +      G P F    N  E I 
Sbjct: 426 RLVKWVNHLPVRELIITTSKSHAAPTNQVHSSEQTAFLSPLKTSGTP-FKFIHNLEETIE 484

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           TA+  + + D+L++ G        +  G        +I+R  L 
Sbjct: 485 TALNEVKQGDLLMILG----PY-AINEG-------QEIVRNYLS 516


>gi|308183597|ref|YP_003927724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori PeCan4]
 gi|308065782|gb|ADO07674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori PeCan4]
          Length = 447

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 172/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLALEEIASLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG IA  
Sbjct: 301 VHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E + I  + +     D +++++ 
Sbjct: 415 GKGDENIQIFKD-KTIFFSDQEVVKDY 440


>gi|317179671|dbj|BAJ57459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F30]
          Length = 447

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYSDLEEAMRLKCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHESIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   +      ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLTPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRNPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLALETIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + +      + VD+AHT + ++ + ++ +     +I  +FG GGDRD+ KRP MG++A  
Sbjct: 301 LHSKPL---VIVDFAHTIDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGEVASY 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|317013264|gb|ADU83872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori Lithuania75]
          Length = 447

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKQIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y + 
Sbjct: 124 LYSDLEEAIRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHQNIENYRD- 182

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                     +    I   +       +     A  +   +  Q   ++     ++  +Q
Sbjct: 183 --IKNSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNIQAFSLNPFISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA  
Sbjct: 301 VHSQPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   ++T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHKIVLTSDNPRSENEEDIIKDILKGINNSSKVVVEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D +++++ 
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKDY 440


>gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
 gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
          Length = 761

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 112/517 (21%), Positives = 221/517 (42%), Gaps = 42/517 (8%)

Query: 10  DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              EL+++  + P+     ++  +  V  D+  + AG +FV + G   DG   + +A  +
Sbjct: 230 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADKR 286

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A+V     +++   A       +++VD+    L +  + LY +   ++  + VTGT 
Sbjct: 287 GAVAVVADQDLNIEGTLACRA----LVIVDDILAALRVLPACLYRRPSTDMAVIGVTGTD 342

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G ++    V+ + +  G+ +  +G        S+        +  PI   K ++ +   G
Sbjct: 343 GVTTTTHLVKAMYEAMGVRTGLVGVLGAYAFGSNKLDARPDASSDPIAAQKLMATMLHNG 402

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V +E ++ G+    +   I       TN+     +   T + Y ++   LF  ++  
Sbjct: 403 TEAVVLETATDGIPPSGVGSEIDYDIAVLTNVRHTDGEDGMTYEQYMSSMASLFSRMVDP 462

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGK 298
           +    +   D                V++  ++ K   +   K      + +V +     
Sbjct: 463 DRHRKVVNIDDPCAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 522

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L G   +YN L    + IA+G     ++  +E++  +PGR E +    +   +
Sbjct: 523 ILEISSGLLGRENIYNILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELI-DEEQAFGV 581

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+A T  +L  +L  +R +   RI+ V GC G++++GKRP+M KIA D +D+ ++T D
Sbjct: 582 IVDHARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSD 641

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEML 456
           NP +EDP  I  +++ G+   +E+  +  A                         A+ M 
Sbjct: 642 NPANEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMG 701

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + DV+V+ GKG++T  I  +  +    D +  RE L
Sbjct: 702 EQGDVVVITGKGNDTYQIEGDKSE-FFDDREECREAL 737


>gi|307638150|gb|ADN80600.1| UDP-N-acetylmuramoyl alanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 908]
 gi|325996749|gb|ADZ52154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori 2018]
 gi|325998344|gb|ADZ50552.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pylori 2017]
          Length = 447

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 166/386 (43%), Gaps = 14/386 (3%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDKRIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L         +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y +A
Sbjct: 124 LYGDLEEAIRLKCEYFIMEVSSHAIVQKRIAGLDFALKVLTNITSDHLDFHQNIENYRDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F++             +A    +  R +    +                   + + 
Sbjct: 184 KNSFFKD--EGLKVINRDETNALFNPINARTYALDKKAHLNVQAFSLNPSISASLCYQQD 241

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +V+         L             G+ +   +    +   LE  + V GR E V
Sbjct: 242 LRDPNVKETALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIV 301

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            +      + VD+AHT++ ++ + +N +     +I  +FG GGDRD+ KRP MG IA   
Sbjct: 302 HSKPL---VVVDFAHTTDGMQQVFENFKN---QKITALFGAGGDRDKTKRPKMGAIASCY 355

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ G
Sbjct: 356 AYKIILTSDNPRSENEEDIIKDILKGINDSSKVIVEKDRKKAILNALENLKGDEVLLILG 415

Query: 467 KGHETVHIVTNGEKKMSVDCDIIREI 492
           KG E + I  + +     D +++++ 
Sbjct: 416 KGDENIQIFKD-KTIFFSDQEVVKDY 440


>gi|319948585|ref|ZP_08022712.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
 gi|319437751|gb|EFV92744.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
          Length = 521

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 131/491 (26%), Positives = 209/491 (42%), Gaps = 40/491 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           DL       L+           +  + +++ DSR +  G  ++A+ G+   G  F  +  
Sbjct: 11  DLSRLLGTPLVGGSRATARAVADLVVVDITDDSRSVSTGHAYLALPGSHHHGLDFEGR-- 68

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
                    + A +    S    +  P LVV + R      ++  +G       +  VTG
Sbjct: 69  --------AAEAGAAVAISDRASATLPTLVVGDPRAVSGPLSAWFHGCPSNAMRVFGVTG 120

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQG 181
           T+GK+S A  ++     +G SS  I   +   +        TTP    L + L  +   G
Sbjct: 121 TNGKTSTAHLLEAGLAAAGESSGLISGAAIRGAGLDLRPVRTTPEAPMLQRTLGRMVRGG 180

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            T  ++E SSH +DQ R+DG++    +FTNLG DH+DYH T + ++  K  LF       
Sbjct: 181 ATACAMEVSSHAIDQGRVDGVRFRTVAFTNLGHDHLDYHHTMEEHYRVKASLFTAARADT 240

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +       D +    +           SV   G  ++ + V       + T         
Sbjct: 241 AVVS---VDDHHGRRLAAESEPPTWTCSVRDVGADVYAEDVVCDGTGSRFTARTPYGAVP 297

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G  QV NALVA    +A GID     E L +L  VPGR E V    +     VD
Sbjct: 298 VRLRVLGPHQVPNALVALTCLLADGIDPLAAAEGLSRLSRVPGRCEPV-NAGQSFTALVD 356

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H       +L ++R++ +GR+I+V G  G RD+ KR  +G+ A   AD+ IVTD++P 
Sbjct: 357 YMHNEPGQRALLPHLRSMATGRLILVIGATGGRDRTKRRPLGRTAASFADLVIVTDESPE 416

Query: 422 SEDPEKIRAEII----------------------HGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            EDP  +RA+++                       G+   +E+ +R  A+  A+ +    
Sbjct: 417 DEDPAAVRADVLAGAREAAGARAGGAAGVRARETAGVE-VVEEPDRGRALALAVAVAGPG 475

Query: 460 DVLVVAGKGHE 470
           DV+VVAG+G E
Sbjct: 476 DVVVVAGRGSE 486


>gi|226507610|ref|NP_001141424.1| hypothetical protein LOC100273534 [Zea mays]
 gi|194704536|gb|ACF86352.1| unknown [Zea mays]
          Length = 540

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 114/517 (22%), Positives = 222/517 (42%), Gaps = 42/517 (8%)

Query: 10  DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              EL+++  + P+     ++  +  V  D+  + AG +FV + G   DG   + +A  +
Sbjct: 9   TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADKR 65

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A+V     +++   A       +++VD+    L +  + LY +   N+  + VTGT 
Sbjct: 66  GAVAVVADQDLNIEGTLACRA----LVIVDDILTALRVLPACLYSRPSMNMAIIGVTGTD 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G ++    V+ + +  G+ +  +G   T    S+        +  PI   K ++ +   G
Sbjct: 122 GVTTTTHLVKAMYEAMGVRTGLVGVLGTYAFSSNKLDARPDASSDPIAAQKLMATMLHNG 181

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V +E  + G+    +D  I       TN+     +   T + Y +    LF  ++  
Sbjct: 182 TEAVVLEKGTDGMPPSGVDSEIDYDIAVLTNVRHTDEENGMTYEEYMSRMASLFSRMVDP 241

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGK 298
           E    +   D  S             V++  ++ K   +  +    +  +  +       
Sbjct: 242 ERHRKVVNIDDPSAPFFAAQGGHDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 301

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L G   +Y+ L    + IA+G     ++  +E++  +PGR E +    +   +
Sbjct: 302 ILEISSGLLGRDNIYSILATVAVGIAVGAPLEDIVRGIEEVDAIPGRCELI-DEEQAFGV 360

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VD+A T  +L  +L  +R +   RI+ V GC G++++GKRP+M KIA D +D+ ++T D
Sbjct: 361 IVDHARTPEALSRLLDGVRELGPRRIVTVVGCCGEKERGKRPVMTKIAADKSDVVMLTSD 420

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------------------AIEML 456
           NP +EDP  I  +++ G+   +E+  +  A                         A+ M 
Sbjct: 421 NPANEDPLDILDDMLAGVGWTMEEYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMG 480

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            + DV+V+ GKG++T  I  + + +   D +  RE L
Sbjct: 481 EQGDVVVITGKGNDTYQIEGD-KNEFFDDREECREAL 516


>gi|317181177|dbj|BAJ58963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori F32]
          Length = 447

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 174/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKMKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+H++ + Y +A
Sbjct: 124 LYGDLEEAMRLGCEYFIMEVSSHAIVQKRIAGLDFALKILTNITSDHLDFHKSIENYKDA 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   ++     ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINAHTYALDKKAHLNVQAFSLNPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    ++  LE  + V GR E 
Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIVPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG +A  
Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAMASC 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHQIILTSDNPRSENEEDIIKDILKGISDSSKVVIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E   I  + +     D ++++  
Sbjct: 415 GKGDENTQIFKD-KTIFFSDQEVVKSY 440


>gi|313683411|ref|YP_004061149.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156271|gb|ADR34949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 431

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 171/385 (44%), Gaps = 26/385 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR--LTTPSPIYLAKA 173
            ++ +TGT+GK++ AS +  +    G  +   G      + A      LTTP+ +   + 
Sbjct: 63  RVIGITGTNGKTTTASAIYSLLLDLGHKAAMQGTRGFFMNDAPVEGKTLTTPTVLNTYRH 122

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++   + G  +  +E SSH ++Q R+ GI       TN+ +DH+DYH++ + Y       
Sbjct: 123 MAQAIASGCEYFVMEVSSHAIEQERIAGITFALKILTNITQDHLDYHESIEEY------- 175

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                  ++            +   +A        + G +    +     +++N     +
Sbjct: 176 ----TRIKNLFFQDESKKLINKDEGKAEFNFKNAFTYGVENPATYKIIAYSLNNGVSGVL 231

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   F+  L G F +YN   A              + + +E    V GR E V  +
Sbjct: 232 KYFEDHVPFVSSLHGFFNLYNITAAMAAVHLVTDESLEKIADVVENFGGVSGRMEVVSES 291

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VD+AHT + +E +L  ++      ++VVFG GGDRD+ KRP+MGK+A+  A  
Sbjct: 292 PL---VIVDFAHTPDGMEQVLNALKE---KEVLVVFGAGGDRDRKKRPLMGKVAVAYAKK 345

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
             VT DNPR EDP+ I  +I+ GI      +   NR  AI  A++     D V+++ GKG
Sbjct: 346 VYVTSDNPRFEDPDAIIEDILAGIEDKSNVVVDVNRRSAIAQALKE-RSGDEVVLILGKG 404

Query: 469 HETVHIVTNGEKKMSVDCDIIREIL 493
            ET  I+ +       D  + +E+L
Sbjct: 405 DETSQIIYDQH-LPFDDRVVAKELL 428


>gi|257459226|ref|ZP_05624345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis
           RM3268]
 gi|257443611|gb|EEV18735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Campylobacter gracilis
           RM3268]
          Length = 436

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 204/469 (43%), Gaps = 61/469 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI-VVSSAYSLQDFSATIRSNTP 91
           ++ +S   +AG  F  +  +      F P+A  +GA+ I +V +   L+           
Sbjct: 10  ITDNSAECEAGCFF--MRTSAN--AKFEPEAAQKGAQIISIVQAKELLKI---------- 55

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                ++R                 I+ +TGT+GK++ A+ +       G S    G   
Sbjct: 56  -----DSR---------------IKIVGITGTNGKTTTAAAIYSTLLDLGFSCGLSGTRG 95

Query: 152 TISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +     +  LTT S       L     QG  +  +E SSH + Q+R++G++     F
Sbjct: 96  AFINERRIDEKGLTTSSVFKTMSYLYEAGKQGCEYFVMEVSSHAIAQNRIEGLEFALKIF 155

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA--IIYADDAYSKEVMKRAHNAGCRV 267
           TNL +DH+DYH + Q Y   K   F +  PK   A       D  +       + A   V
Sbjct: 156 TNLSQDHLDYHGSMQEYAAVKSSFFADDAPKLINADDGHIKFDPANALTYGIKNAASFGV 215

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIG 326
              G +G    L +            +  G +      L GEF +YN   A     I   
Sbjct: 216 SGYGLKGGIDALVR------------TPNGDNAQLQSDLIGEFNLYNLTAAFAAVKILTK 263

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +  + + L     V GR + V   ++   + VD+AHT + +E +L  +R   SG II 
Sbjct: 264 LPNEKIAKALANFGGVEGRVQIV---NKDPLVIVDFAHTPDGIEKVLNALRA--SGEIIA 318

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKG 443
           VFG GGDRD GKRP MG IA   A I IVT DNPRSE+P++I  +I  G+      ++  
Sbjct: 319 VFGAGGDRDHGKRPKMGAIAEHFAKICIVTSDNPRSENPDEIIEQICAGMRRKDKILKIT 378

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           +R EAI  A+++    +++ + GKG ET   +  G K    D  ++ E+
Sbjct: 379 DRKEAIARALDLAKNGEMIAILGKGDETYQEIK-GVKHPFSDKQVVSEL 426


>gi|308185264|ref|YP_003929397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Helicobacter pylori SJM180]
 gi|308061184|gb|ADO03080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Helicobacter pylori SJM180]
          Length = 447

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 173/387 (44%), Gaps = 16/387 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
                I+ +TGT+GK++ AS +  +       +  +G      +    ++  LTTP+ + 
Sbjct: 64  DFKIKIVGITGTNGKTTTASLMYSLLLDLNKKTALLGTRGFFINDERIKEKGLTTPTLLE 123

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   L      G  +  +E SSH + Q R+ G+       TN+  DH+D+HQ  + Y + 
Sbjct: 124 LYGDLEEAIRLGCEYFIMEVSSHAIIQKRIAGLDFALKILTNITSDHLDFHQNIENYRDT 183

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K         +    I   +       +     A  +   +  Q   ++     ++  +Q
Sbjct: 184 K---NSFFKDEGLKVINRDETNALFNPINTHTYALDKRAHLNVQAFSLNPSISASLCYQQ 240

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEF 348
            +      +      PL G + +YN L       +   +    +   LE  + V GR E 
Sbjct: 241 DLRDPNLKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLEAIAPLLENFYGVKGRLEI 300

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V +      + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA  
Sbjct: 301 VHSKPL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASC 354

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A   I+T DNPRSE+ E I  +I+ GI      I + +R +AI  A+E L   +VL++ 
Sbjct: 355 YAHQIILTSDNPRSENEEDIIKDILKGINDSSKVIIEKDRKKAILNALENLKDDEVLLIL 414

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREI 492
           GKG E + I  + +     D +++++ 
Sbjct: 415 GKGDENIQIFKD-KTIFFSDQEVVKDY 440


>gi|269795579|ref|YP_003315034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097764|gb|ACZ22200.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 535

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 218/488 (44%), Gaps = 29/488 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY----SLQDFSAT 85
           ++ V   S  +Q G +FVA+ G +  G  F   A+A GA A++  +         D    
Sbjct: 38  VSGVVLGSADVQPGDLFVAVPGARSHGARFTAAAVAAGAVAVLTDTEGLALLESTDEGLA 97

Query: 86  IRSNTPILVVD---NTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
           +   TP++++    + ++     AS  Y           VTGT+GK++    +  +    
Sbjct: 98  LVHGTPVVLLPQGSDPQRAAGSAASWFYDHPSAALTSFGVTGTNGKTTTTYLLDHLLTAL 157

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G +   +G   T   +    +RLTTP    L   L+ +   GV  +++E SSH + Q R+
Sbjct: 158 GRTVGLVGTVETRSGARVLPSRLTTPDAATLQGVLATMREDGVDVLAMEVSSHSISQRRI 217

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG+      FTNL +DH+D+H     YF AK  LF     +    ++  +          
Sbjct: 218 DGLHFDVAGFTNLSQDHLDFHGDLDRYFAAKAELFTAERARRGVVVVDDEWGRRLAATAD 277

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318
                  V   G       ++ V A  +    ++             LPG F V NA +A
Sbjct: 278 IPTVTLSVEHSGGPQSDWTVRDVHAGASGSTFSVVHRDGRSVRARTALPGSFNVANAALA 337

Query: 319 AGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
             + +  GI+     A +         VPGR E V  +    R+ VD+AH  ++L + L 
Sbjct: 338 IVMVVESGIEVGTVTAALEAAGGLSPAVPGRMEQVSDS---PRVVVDFAHNPDALALALA 394

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +R  T+GR++VVFG  G+RD  KRP+MG+IA++ AD+ +VTDD+P  E  + IRAE++ 
Sbjct: 395 ALRPTTAGRLVVVFGATGERDTTKRPVMGRIAVEGADVVVVTDDDPHGEAADGIRAEVLA 454

Query: 435 GIP----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
           G              +E   R  AIR A+   + +D ++VAG+GHE    + +G      
Sbjct: 455 GAREAAAQPGCDVDVLEAAPRALAIRAAVLAADDEDTVLVAGRGHEVWQEI-DGVDHPLD 513

Query: 485 DCDIIREI 492
           D    R  
Sbjct: 514 DRVEARAA 521


>gi|10566744|dbj|BAB15946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           glutamicum]
          Length = 555

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 132/490 (26%), Positives = 195/490 (39%), Gaps = 23/490 (4%)

Query: 19  SIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
            +      E+ I  +  DS  +  +  IF A+ G +  G  F     A  A AI+  +A 
Sbjct: 59  GVPAHAVGEQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAILTDAAG 118

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
              +         PI+VVD+ R  L   +S +YG   ++   + VTGTSGK++ +  +++
Sbjct: 119 --LEVLNEAGETRPIIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSYLLEK 176

Query: 136 ICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
               +G     IG T T         +LTTP    L    + +   GVTHV +E SSH L
Sbjct: 177 GLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSSHAL 236

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYS 253
              R+ G      +FTNL +DH+D+H T   YF+AK   F    P      ++  DD++ 
Sbjct: 237 SLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCVDDSWG 296

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           + +   A +                   V     +     +   + +     LPG F V 
Sbjct: 297 QRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSNQSYQVELALPGAFNVA 356

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +      A                 VPGR E +    +     VDYAH   ++  +L
Sbjct: 357 NATL--AFAAAAPWVLMATFARGMSKVAVPGRMERI-DEGQDFLAVVDYAHKPAAVAAVL 413

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +RT   GR+   + C   RD  KR  MG      +  +  TD N        IRA + 
Sbjct: 414 DTLRTQIDGRLGSGYRCWWRRDSTKRGPMGS-CPHRSGSSYCTDANLVR-VAGTIRAAVT 471

Query: 434 HGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
            G              +E G+R EAIR  +E     D +VVAGKGHE   +V  G     
Sbjct: 472 AGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKGHEVGQLVA-GVTHHF 530

Query: 484 VDCDIIREIL 493
            D +  R  L
Sbjct: 531 DDREEGRAAL 540


>gi|116512675|ref|YP_811582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123125372|sp|Q02X53|MURE_LACLS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116108329|gb|ABJ73469.1| UDP-N-acetylmuramyl tripeptide synthase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 483

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 107/499 (21%), Positives = 203/499 (40%), Gaps = 34/499 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F E+ +    +    +E   +++S DSR      +F A  G       ++  
Sbjct: 9   EILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFK-KEYLTD 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
            +   A   V    Y +           P ++V + ++ ++L A+  Y         LA+
Sbjct: 67  -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAANFYKFPQNKLKTLAL 114

Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++ A F + I  + +G  +  +    T+        + LTTP  + L + ++  
Sbjct: 115 TGTKGKTTSAYFAKSILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+TH+ +E SS      R+ G+    G F N+  DHI   +              +L
Sbjct: 175 LENGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVE--HPTLEDYFYCKRQL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      +  A+  +   + +  +         G   +   ++            ++   
Sbjct: 233 LKNSRYFVANAEMNHFAIIKEELNERKIPHAFYGADSENKIIESKGLHF------VTDGS 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F   L G F   NAL  A    A+G     + + L    V PGR E + T   G  
Sbjct: 287 VSGEFDIRLLGRFNQENALATALATKALGASFENIRQGLASAIV-PGRMELL-TAKNGAH 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416
           IY+DYAH   SLE +++ +    +G++ +V G  G++ + +R   G++  +   +  I+T
Sbjct: 345 IYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRLNVILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474
            D+   E+P+ I  EI   +   ++   +R  AI+ AI       D +++AGKG +   +
Sbjct: 405 TDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGADMFQL 464

Query: 475 VTNGEKKMSVDCDIIREIL 493
                +    D    ++ L
Sbjct: 465 KDGKREPYIGDSPAAQKYL 483


>gi|255280636|ref|ZP_05345191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255268573|gb|EET61778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 500

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/512 (21%), Positives = 206/512 (40%), Gaps = 40/512 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +   D   ++ +  +     +  +   +  V+ DSR +  G +F+        G  F+P+
Sbjct: 2   ITTHDVERILREQGLLCRADKNEEAAPVTWVTCDSREVIPGTLFIC------KGAEFLPE 55

Query: 63  ----AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
               A+A G  A +                     VV + R+ +++ ++  +   PE   
Sbjct: 56  YLLEAVAYGCIAYMSEE-------RWGTPKTVRGFVVKDIRRAMAVVSAAFFEYEPEALK 108

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT------STISSFAQDNRLTTPSPIYL 170
           +  +TGT GK++ A +++ +         +          +   +   D  +TTP    L
Sbjct: 109 LTGITGTKGKTTTAWYLRAMLDEWQQEKGKKKTGLISSVENFDGNCRSDAVMTTPEAPVL 168

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + ++ + + G  ++++E SS  L  HR+DG+    G F N+  DHI   + +   F   
Sbjct: 169 YELIARVRAAGSEYMTIETSSQALKYHRVDGLHFQVGIFLNISEDHISPGEHRD--FEDY 226

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            +    LL +   A +  D  Y+++++K A  A   V    +    +  + +     KQ 
Sbjct: 227 FQSKLSLLRQCGTACVNLDSDYAQQILKEARKAQRVVTFGQHHEAQLRYRILPEKDGKQT 286

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             ++       F   + G F + NA+ A       G+     ++       VPGR E   
Sbjct: 287 FEVTCPQFTEQFSLKMRGSFNIENAVAAIAAAQVYGVPV-HCMQKALAETTVPGRMEVFE 345

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +  +     VDYAH   S + + + +        RII VFGC G +   +R  +G +A  
Sbjct: 346 SGDKKVCAIVDYAHNQLSFQKLFQTVFQEYRSFHRIITVFGCPGGKALNRRRELGVLAGM 405

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQ---DV 461
            +D   VT D+P  ED  +I  E+   +           +R  AIR+A+E         +
Sbjct: 406 FSDYVYVTSDDPGMEDESRIADEVGSYVEMAGGACDCIADRRIAIRSALEKAGSGTEKTL 465

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++V G+G E    +         D +I+RE++
Sbjct: 466 VLVLGRGSEKFQRIGRRLYAYPTDANIVRELM 497


>gi|301165430|emb|CBW25001.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteriovorax marinus SJ]
          Length = 461

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 123/419 (29%), Positives = 186/419 (44%), Gaps = 42/419 (10%)

Query: 83  SATIRSNTPILVVD--NTRKFLSLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                    I VVD  +      L A+     K    +  +TGT+GK++V+    Q+   
Sbjct: 71  KKVDVEGVNIWVVDPSDFLWAQDLIANEIYPDKLKIKLAGITGTNGKTTVSYLAMQLATL 130

Query: 140 SGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            G  S  IG      + +   +D   TTPS + L K +          + +E SSH L Q
Sbjct: 131 LGYPSISIGTIGVRDSKNILEEDILSTTPSYLELRKIIHRY-QDDYKFIFMEVSSHALAQ 189

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           +RL+ ++L + ++T+  +DH+DYH+T + YF AK+++ E    K                
Sbjct: 190 NRLNKVRLKSCAWTSFSQDHLDYHKTNEEYFKAKLKILESSDDKNLIVPSSE-------- 241

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                                         N     I     D          +   N  
Sbjct: 242 ---------------------KSLLALLADNNVSRKIVEPYFDECLEAGFKASYNQANLS 280

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           VA  LC  + I  ++  + L KL +  GRFE +  N     + VDYAHT ++LE I   I
Sbjct: 281 VAIALC-EVLIGESIDRKLLSKLSLPAGRFEAIKYNEH--IVIVDYAHTPDALENICGTI 337

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +   +S  + V+FGCGGDRD+ KRP+MGK     AD  IVT DNPR+E+P  I  +I  G
Sbjct: 338 KKDFSSFELRVIFGCGGDRDRSKRPLMGKAVSKYADNIIVTSDNPRTEEPSSIIDDITPG 397

Query: 436 IPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           I   +I   +R  AI  ++E L++  V+++AGKGHE    V  G K    D + + +I+
Sbjct: 398 ISRDYIRIEDRRLAIEKSLEDLSRPTVVLIAGKGHEEYQDVK-GIKHHFSDKEEVMKII 455


>gi|125624766|ref|YP_001033249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|166224780|sp|A2RMM5|MURE_LACLM RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|124493574|emb|CAL98559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071566|gb|ADJ60966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 483

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 107/499 (21%), Positives = 203/499 (40%), Gaps = 34/499 (6%)

Query: 5   DLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +++ K  +F E+ +    +    +E   +++S DSR      +F A  G       ++  
Sbjct: 9   EILKKDNNFREISSAGEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFK-KEYLTD 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAV 120
            +   A   V    Y +           P ++V + ++ ++L A+  Y         LA+
Sbjct: 67  -LE--AAFYVSEFDYEVA---------LPAIIVTDVKRAMALIAANFYEFPQNKLKTLAL 114

Query: 121 TGTSGKSSVASFVQQI-CQRSGLSSFQIGP--TSTISSFAQDNRLTTPSPIYLAKALSYL 177
           TGT GK++ A F + I  + +G  +  +    T+        + LTTP  + L + ++  
Sbjct: 115 TGTKGKTTSAYFAKAILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKA 174

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+TH+ +E SS      R+ G+    G F N+  DHI   +              +L
Sbjct: 175 LENGMTHLVMEVSSQAYKTERVYGLTFDVGVFLNISPDHIGPVE--HPTLEDYFYCKRQL 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      +  A+  +   + +  +         G   +   ++            ++   
Sbjct: 233 LKNSRYFVANAEMNHFAIIKEELNERKIPHAFYGADSENKIIESKGLHF------VTDGS 286

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F   L G F   NAL  A    A+G     + + L    V PGR E + T   G  
Sbjct: 287 VSGEFDIRLLGRFNQENALATALATKALGASFENIRQGLASAIV-PGRMELL-TAKNGAH 344

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVT 416
           IY+DYAH   SLE +++ +    +G++ +V G  G++ + +R   G++  +   +  I+T
Sbjct: 345 IYIDYAHNGLSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRLNVILT 404

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLN-KQDVLVVAGKGHETVHI 474
            D+   E+P+ I  EI   +   ++   +R  AI+ AI       D +++AGKG +   +
Sbjct: 405 TDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKGADMFQL 464

Query: 475 VTNGEKKMSVDCDIIREIL 493
                +    D    ++ L
Sbjct: 465 KDGKREPYIGDSPAAQKYL 483


>gi|157736775|ref|YP_001489458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698629|gb|ABV66789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 429

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 118/467 (25%), Positives = 195/467 (41%), Gaps = 57/467 (12%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           + +S       IFV      +    ++  A   G    + SS                  
Sbjct: 11  TDNSAEADKNSIFV----VSKHNEKYLQNAKENGCIEFLNSSEL---------------- 50

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                                  I+ +TGT+GK++ A+ + +I    G      G     
Sbjct: 51  -------------KNHLDMSSIKIIGITGTNGKTTTATTIYKILLSLGFKVALQGTRGFF 97

Query: 154 SSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +  Q  D  LTTP  +     +      G     +E SSH ++Q+R++G+       TN
Sbjct: 98  INETQVEDYSLTTPIQLGNFVHIQKAIQNGCQFFVMEVSSHAIEQNRIEGLTFALKIHTN 157

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + RDH+DYH+T +      +R+    L  ES  ++  DD   K     A     + LS  
Sbjct: 158 ITRDHLDYHKTIE----EYIRVKNSFLSDESVKLVNIDDNVMKYNFTNAFTYSLKNLSDY 213

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSA 330
              K+          +  +V  S + K + F   + G F +YN + +             
Sbjct: 214 KVTKYE-------FEHGMKVEFSYKEKTYTFTSMMMGIFNIYNLMASIAAVHITTQKSLE 266

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L+    V GR E V   S    + VD+AHT + ++ +   +++  +  II VFG 
Sbjct: 267 DICQTLKNFSCVSGRMEIV---SLNPLVIVDFAHTPDGMDEV---LKSFPNKDIICVFGA 320

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447
           GG+RD  KRP+MG++A   +   IVT DNPR E+P+ I  +I+ GI          +R E
Sbjct: 321 GGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGINDKSNVEVLIDRKE 380

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           A++ AI + N++ V++V GKG E   I+ + +K    D D + +IL 
Sbjct: 381 ALKKAISLANEKSVILVLGKGDEATQIIGD-KKFEFSDKDEVLKILN 426


>gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group]
          Length = 770

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 115/530 (21%), Positives = 233/530 (43%), Gaps = 55/530 (10%)

Query: 10  DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              EL+++  + P+     ++  +  V  D+  + AG ++V + G +  G   + +A  +
Sbjct: 226 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKR 282

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A+V      ++   A       +++VD+    L +  + LY +  +++  + V GT 
Sbjct: 283 GAVAVVADQTVDIEGTLACRA----LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTD 338

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G ++ A  V+ + +  G+ +  +G        ++        +  PI + + ++ +   G
Sbjct: 339 GVTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                +EA++ G+    +D  I       TN+     +   T + Y N+   LF  ++  
Sbjct: 399 AEAALLEATTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGK 298
           E    +   D  S             V++  ++ K   +   K      + +V +     
Sbjct: 459 ERHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 518

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +    +   +
Sbjct: 519 ILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELI-DEEQAFGV 577

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGKI 405
            VD+A T  SL  +L  ++ +   RI+             VV GC G+R++GKRP+M K+
Sbjct: 578 IVDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTKV 637

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK---------------GNR----- 445
           A + +D+ ++T DNP +EDP  I  +++ G+   +E+               G+R     
Sbjct: 638 AAEKSDVVMLTSDNPANEDPLDILDDMLAGVGWTMEEYLKHGTNDYYPPLPNGHRIFLHD 697

Query: 446 --IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               A+R A+ M  + DV+V+ GKG++T  I  + +K+   D +  RE L
Sbjct: 698 IRRVAVRAAVAMGEQGDVVVITGKGNDTYQIEVD-KKEFFDDREECREAL 746


>gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 503

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 108/492 (21%), Positives = 201/492 (40%), Gaps = 44/492 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L+     + ++         R+ +I  +S  S  ++ G +FV + G K DGH ++
Sbjct: 2   MKLKELLSSIEIKNMD-------DERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYL 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
            +A   GA A +V               + P  VV N+R  L+   +R YG   + +  +
Sbjct: 55  GKAAQNGAVAAIVE--------ELQEDVDIPQYVVSNSRIALAKLGARFYGDPSQKMKLI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
            +T T+GK++ +  V  I ++SG  +  IG     I   +    LTTP  + L   LS +
Sbjct: 107 GITATNGKTTTSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
             +GV+HV++E SS  L+ HR++ +     +  N+ R+HID H + + YF AK  L    
Sbjct: 167 VDKGVSHVTMEVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRNA 226

Query: 237 --------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                    L     A +                 G                 +  +   
Sbjct: 227 SENSIAVLNLDCPYSASLVDQTKAEVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPF 286

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                  E  +F+    +PG   VYN++VA  + +  G+ +A + E L+    V  RF+F
Sbjct: 287 TANGQQYEPSEFEVQLLVPGLHSVYNSMVAITVSLLCGVSTATIQETLKTFAGVERRFQF 346

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +       +I  D+   S ++++ L  ++ +   ++ +V+   G+R         +    
Sbjct: 347 IFEE--DIKIIDDHFANSGNIDVTLGTLKYMDYEKLHLVYAIRGERGPTVNRENAEAIAR 404

Query: 409 LADIAIVTD------------DNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIE 454
            A    +T+             +  +E    +  E++   GI          ++I  AI 
Sbjct: 405 WAPKLGITEIIATKSVSHVTHKDRVTEAELTVFQEVMRDAGI-KVDLFDELPDSICYAIG 463

Query: 455 MLNKQDVLVVAG 466
             N+ D++++ G
Sbjct: 464 KANEGDLILLGG 475


>gi|75764855|ref|ZP_00744223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74487658|gb|EAO51506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 297

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 139/292 (47%), Gaps = 9/292 (3%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNA----KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            FTNL +DH+DYH+T + Y +A      +L            +   D    E   R+  A
Sbjct: 1   MFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRSTAA 60

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                 +      +  K +         T+    +  +    L G+F VYN L A    +
Sbjct: 61  TVVTYGIDTTSDIM-AKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAAGL 119

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+    ++  +++L  VPGRFE V    +   + VDYAHT +SLE +LK  +    G 
Sbjct: 120 VSGVKLQTIIAVIKELAGVPGRFEVV-DGGQNYTVIVDYAHTPDSLENVLKTAKQFAKGD 178

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIE 441
           +  + GCGGDRD+ KRPIM  +A   A  AI T DNPRSEDP  I  +++ G     +  
Sbjct: 179 VYCIVGCGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQGASGNNYEV 238

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             +R EAI  AI  +   D++++AGKGHET  I+   E     D ++ +E +
Sbjct: 239 IIDRKEAIHHAIANVKADDIIIIAGKGHETYQIIG-KEVHHFDDREVAKEAI 289


>gi|218671408|ref|ZP_03521078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 222

 Score =  192 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/218 (46%), Positives = 134/218 (61%), Gaps = 1/218 (0%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            H ++V    +KQ   I +  + F+   PL G+ QV NALVAAGL ++ G++  + +  L
Sbjct: 2   PHAERVEHFRHKQMAEIHIGDEIFEVDIPLAGDLQVANALVAAGLAMSTGVEPNVAMAAL 61

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           EKL    GR E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+
Sbjct: 62  EKLVGASGRLELVGHTKDGALAYVDYAHKPDALENVLNSVRPFTTGRVVVVFGCGGDRDR 121

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           GKRPIMG+IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR A+ ML
Sbjct: 122 GKRPIMGEIACRLADVVIVTDDNPRSEEPAAIRAEIMAAAPCASEIADRATAIREAVAML 181

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              D L+VAGKGHE    +         D   +R+ L 
Sbjct: 182 TSGDTLIVAGKGHEEGQTIGA-VTLPFSDHAEVRKALE 218


>gi|315635954|ref|ZP_07891215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
 gi|315479738|gb|EFU70410.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
          Length = 429

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/467 (24%), Positives = 190/467 (40%), Gaps = 57/467 (12%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           + +S       IFV      +    +I  A   G    + S                   
Sbjct: 11  TDNSAEADKNSIFV----ISKHNEKYIQNAKENGCIEFLNSGEL---------------- 50

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                                  I+ +TGT+GK++ A+ + +I    G      G     
Sbjct: 51  -------------KNHLDMSSIKIIGITGTNGKTTTATTIYKILLSLGFKVALQGTRGFF 97

Query: 154 SSFAQ--DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +  Q  D  LTTP  +     +      G     +E SSH ++Q+R++G+       TN
Sbjct: 98  INETQVEDYSLTTPIQLGNFVHIQKAIQNGCQFFVMEVSSHAIEQNRIEGLTFALKIHTN 157

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + RDH+DYH+T +      +R+    L  +S  ++  DD                  +  
Sbjct: 158 ITRDHLDYHKTIE----EYIRVKNSFLSDDSVKLVNIDD-------NVMKYNFTNAFTYS 206

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-DSA 330
            +    +        +  +V  S + K + F   + G F +YN + +             
Sbjct: 207 LKNLSDYKVSKYEFEHGMKVEFSYKEKTYTFTSMMMGIFNIYNLIASIAAVHITTQKSLE 266

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L+    V GR E V   S    I VD+AHT + ++ +   +++  +  II VFG 
Sbjct: 267 DICQTLKNFSCVSGRMEIV---SLNPLIIVDFAHTPDGMDEV---LKSFPNKDIICVFGA 320

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447
           GG+RD  KRP+MG++A   +   IVT DNPR E+P+ I  +I+ GI          +R E
Sbjct: 321 GGNRDSAKRPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGINDKSNVEVLIDRKE 380

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           A++ AI + N++ V++V GKG E   I+ + +K    D D + +IL 
Sbjct: 381 ALKKAISLANEKSVILVLGKGDEATQIIGD-KKFEFSDKDEVLKILN 426


>gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 391

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 107/389 (27%), Positives = 172/389 (44%), Gaps = 27/389 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG-----HLFIPQAIAQGAEAIVVSSAY 77
           +     KI  +  DSR I  G +F+ + G   DG     H F+  A+  GA A++V    
Sbjct: 6   IGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAVKNGAVALIVERDV 63

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQ 135
           +++          P ++V + R  +++ AS  YG     +  + +TGT+GK++ +  +++
Sbjct: 64  NIE---------IPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEK 114

Query: 136 ICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I    G  +  +G     + S      + T  P  L + L  + +Q   +  +E +S GL
Sbjct: 115 ILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGL 174

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYAD 249
              R+ G       FTNL +DH+DYH T   Y + K  LF           +  A++ AD
Sbjct: 175 HMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNAD 234

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +   K               G  +  K +       +  +S    + +    L G 
Sbjct: 235 DPSVEYFKKITSAEVITYGIHN--GADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGR 292

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F VYNAL A  + +  GI    + + L  L  + GR E +   ++   + VDYAHT ++L
Sbjct: 293 FNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEII-DENQDFLVIVDYAHTPDAL 351

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           E +L  IR    G+II VFGCGGDRD  K
Sbjct: 352 ENVLSTIREFAKGKIITVFGCGGDRDAKK 380


>gi|322411195|gb|EFY02103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 394

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/405 (23%), Positives = 170/405 (41%), Gaps = 18/405 (4%)

Query: 95  VDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTS 151
           V + +K +SL A   Y    +   +L  TGT GK++ A F   I + S   +      T+
Sbjct: 2   VTDIKKAMSLIAMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTT 61

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                   ++LTTP  + L   ++     G+TH+ +E SS      R+ G+    G F N
Sbjct: 62  LDGKTFFKSQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVGRVYGLTFDVGVFLN 121

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DHI      +          + LL + S A++          +              
Sbjct: 122 ISPDHIGPI---EHPTFEDYFYHKRLLMENSRAVVINSGMDHFLFLADQVAEQ------- 171

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
               +  L       ++     +       +   L G F   NA+ A   C  +G   A 
Sbjct: 172 EHAFYGALSDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACFRLGASLAD 231

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + + K   VPGR E +   +   +++VDYAH  +SLE +L  +    +G ++++ G  
Sbjct: 232 IQKGIAK-TRVPGRMEVLTMTNH-AKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAP 289

Query: 392 GDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAI 449
           G++ + +R   G +     ++  I+T D+P  EDPE I  EI   I   I+   +R +AI
Sbjct: 290 GNKGESRRADFGTVINQHPNLTVILTADDPNFEDPEDISQEIASHITRPIDIVSDREQAI 349

Query: 450 RTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           + A+ +    +D +++AGKG +   IV   +   + D  + +  L
Sbjct: 350 QKAMSLCQGPEDAVIIAGKGADAYQIVKGEKAPYAGDLAVAQRYL 394


>gi|237751045|ref|ZP_04581525.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
 gi|229373490|gb|EEO23881.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
          Length = 451

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/491 (23%), Positives = 192/491 (39%), Gaps = 75/491 (15%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ D+R ++   IF+                                  F  ++  N  
Sbjct: 4   HITDDTRKLREDSIFL---------------------------KTPQNAHFIESLPQNIR 36

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           IL  D  +++               ++ +TGT+GK++ A+ +  +    G     +G   
Sbjct: 37  ILERDELKEYF---------NTNIKLIGITGTNGKTTTAAAIYSVLLDMGYKVALLGTRG 87

Query: 152 TISS--FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +    +   LTTPS + L + +   ++ G     +E SSH + Q R+ G++      
Sbjct: 88  MFINDTRKKPKGLTTPSLLELYEDIDMAANMGCDFFVMEVSSHAIKQERIYGLEFCLKIL 147

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DYH+T + Y   K    + L   E   II  DD     +    H     V S
Sbjct: 148 TNITSDHLDYHKTWEDYAKTK---MQFLQSGECIKIINLDDKSGASMRFYPHVLTYGVES 204

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-AGLCIAIGID 328
            G+     +  +                ++      L G F +YN + A   +      D
Sbjct: 205 KGHLFVNAYGLQDGIFAQMSLRLQKDSMQECVIESSLFGLFNLYNLMAATLAIHAITKQD 264

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   ++    V GR E V        + +D+AHT++ ++ + ++ +   +  I VVF
Sbjct: 265 IQSICACVKNFGGVSGRMEIVSKTPL---VIIDFAHTTDGMKQVFESFK---TKNISVVF 318

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------------ 436
           G GGDRD+ KR  MG  A   A    +T+DNPRSE+P  I  EI  G+            
Sbjct: 319 GAGGDRDKSKREKMGACARFYAKKIYITNDNPRSENPLSIAQEIAKGVFAKSLNETDIEI 378

Query: 437 --------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
                                +R EAI+ A+  L K  VL+V GKG E+V I  + E   
Sbjct: 379 KENTSYEIKSSNAAITMQIILDRKEAIKLALRELQKDWVLLVLGKGDESVQIFRDNE-IH 437

Query: 483 SVDCDIIREIL 493
             D + ++EIL
Sbjct: 438 FSDKECVQEIL 448


>gi|58698810|ref|ZP_00373688.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534668|gb|EAL58789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 410

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 148/437 (33%), Positives = 228/437 (52%), Gaps = 37/437 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++L++                  + +I  V+ + + I+ G++FV +  ++ D  ++I
Sbjct: 1   MKLRELLHNII-----------DVNFDIEIKGVTCNPKKIKEGYLFVCV--SERD-RIYI 46

Query: 61  PQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG-KHPENI 117
            Q ++ GA+AI+ S     +L       R     +   N ++  S   SR Y  K P+ +
Sbjct: 47  DQILSCGAKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKAL 174
            AVTGT+GK+SV  F +QI Q SG ++  IG   T          N LTTP    L    
Sbjct: 107 AAVTGTNGKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDL---Y 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L    V H+ +E+SSHG+DQ+R+ G+KL A +FTN  +DH+DYH++   Y   K RLF
Sbjct: 164 ATLRGISVEHLVLESSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLF 223

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E+LP+   AI+ AD      ++K A     +V++ G +G  I L +  +  N Q +T+ 
Sbjct: 224 YEVLPEGKTAILNADIDEYGALLKIAEKRSNKVVTYGKKGSDITLLEQTSTPNGQHLTVK 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++ + ++  FP+ G+FQ YN L A G+      +       +EKL   PGR E V     
Sbjct: 284 IDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEKVKP--- 335

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
               +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ KR  MGKIA   AD  I
Sbjct: 336 --FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQMYADKVI 393

Query: 415 VTDDN----PRSEDPEK 427
           +T  N    PR   P  
Sbjct: 394 ITQANSKKSPRIISPAA 410


>gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 535

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 102/494 (20%), Positives = 189/494 (38%), Gaps = 41/494 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L DL+     + I   +    +  E  IN+++  S+ ++   +FV I G++ DGH + 
Sbjct: 1   MNLTDLLKSVEIDSIRP-NQIETELNEIDINKITYHSKEVETDTLFVCIKGHQTDGHNYA 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--L 118
             A++QGA  I+V               +   L V N+R+ L++ +S  + +  +++   
Sbjct: 60  KHAVSQGATVIIVEQFIE--------DLDVLQLKVSNSREVLAILSSNFFDQPSKSMSLF 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            VT T+GK+++    ++I +   L S  IG          +  RLTTP    L +  + +
Sbjct: 112 GVTATNGKTTITYMTEEIFKAYQLKSGIIGTIVVKIDKEIEMSRLTTPESYDLQQYFAKM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             Q +THVS+E SS  L+  R+        +FTN+  +HI  H + +AYF+AK  L    
Sbjct: 172 RDQEITHVSMEVSSSALELKRVYHTDFDVVAFTNISPEHIQLHDSFEAYFDAKASLIRNA 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---- 293
               +  +    D      +     A      +  +   I +  +          +    
Sbjct: 232 SKMSTAIL--NLDEQLLIPLAEETAAQVVTFGIENKSGTITVSDIRFSSGMPSFKVTIQE 289

Query: 294 --------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                    +E   FD    +PG   +YNAL A    +   I    V   ++    V  R
Sbjct: 290 PFNTLSGERIEPTSFDLELSIPGYHSIYNALTALVTGLVNDIPLEYVQRGIKNFRGVERR 349

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F+ +        +  D     N+++  ++ I  +    + +V    G         + + 
Sbjct: 350 FQILYDKEFK--VIDDLLLNQNNIDSCMETINHLDYNELHLVHALRGSNGPAHSTEIAES 407

Query: 406 ALDLAD-----IAIVTD--------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                        I+T         D    E+       +              +A+R  
Sbjct: 408 LAKWFHELKISKIILTTASSHVAKKDAVTDEELAAFLKVMKQSNIEVTFSTELDDALRFG 467

Query: 453 IEMLNKQDVLVVAG 466
           +E LN++DVL+++G
Sbjct: 468 VERLNEEDVLLISG 481


>gi|257483452|ref|ZP_05637493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 295

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 7/291 (2%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TNL RDH+DYH T +AY  AK +LF     K     +  DDA+ +E+      +  
Sbjct: 1   MAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAFGRELAGIKQESRL 58

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              S      +++ +      +  + T+     +      L G F + N L A G  + +
Sbjct: 59  ITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALLGL 118

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
                 +L+ L KL    GR + +G  +    + VDYAHT ++LE +L+ +R    GR++
Sbjct: 119 DYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGRLL 177

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEK 442
            +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I  G   +      
Sbjct: 178 CLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDIRPGFTAVDKVRFI 237

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             R +AI   I   +  DV+V+AGKGHE    + +G++    D     + L
Sbjct: 238 EGRGQAIAELIASASADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEAAKAL 287


>gi|307262595|ref|ZP_07544225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872018|gb|EFN03732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 244

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
            KF+    V       ++       + +    L G F V N L A    + +G D   ++
Sbjct: 20  HKFVKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTALAGLLVLGHDLPKLI 79

Query: 334 EHLEKLHVVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           E    L  V GR E             + VDYAHT ++LE  L+  R  T G +  +FGC
Sbjct: 80  ETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDALEKALQAARLHTEGELYCIFGC 139

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447
           GGDRD GKRP+M  IA +LAD  I TDDNPR+ED  KI A+I++G   +       +R +
Sbjct: 140 GGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIMADILNGFVQVEKVQVIHDREQ 199

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AI+TAIE  N++DV+++AGKGHE   I+    K    D +   + L
Sbjct: 200 AIKTAIEQANEKDVILIAGKGHEDYQIIGT-TKHHFSDQETAAKYL 244


>gi|328954771|ref|YP_004372104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
 gi|328455095|gb|AEB06289.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
          Length = 518

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 116/482 (24%), Positives = 197/482 (40%), Gaps = 21/482 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-------F 82
           +  +S DSR  +   +FV   G       ++  AI +GA A +  +  +           
Sbjct: 40  VRGMSIDSRATEMDNLFVC-KGAAFKPA-YLTAAIRRGASAFLCQTQAAAPACDLSAPAE 97

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRS 140
            A    +TP L+V + R  ++L A  +YG       I+ VTGT GK++V   ++ I + +
Sbjct: 98  LAAAAPDTPGLIVSDLRASMALIAPIIYGHPDRALRIVGVTGTKGKTTVTFMLRSILRAA 157

Query: 141 GLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           G+    +G           ++  TTP    L + L      G + + +E SS  L   R+
Sbjct: 158 GMEPSMVGSIEVDDGVERHESHNTTPEAPDLWRHLRNTVDSGRSVMIMEVSSQALKYDRV 217

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
            GI L  G F N+G DHI   +    + +            E+  +    D   + + + 
Sbjct: 218 LGITLDVGCFLNIGSDHISPIEHP-NFEDYLASKLRIFDQSETAVVNLDTDHLVEVLKRA 276

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                   +S       +   ++          I    +  +    + G F V NAL AA
Sbjct: 277 QTAGKLVTISSRRTDADLRADQISVASEHIGFDIVERARRHEIALGMSGLFNVDNALAAA 336

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L   +G+D   +   L +  V PGR E   +        VDYAH   S  ++ ++I + 
Sbjct: 337 ALARELGVDYTAIATGLSRARV-PGRMERFRSPDGRIVSLVDYAHNELSFRLLFESIESE 395

Query: 380 TSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP- 437
              R  I VFG  GD+   +R  + +IA   AD+ I T+D+P  E  E I A++    P 
Sbjct: 396 YPDRYVIAVFGAPGDKAFDRRHELPRIAGKSADLLIYTEDDPGGERVEDICAQLADNTPT 455

Query: 438 --GFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
              F    NR +A+  A E     +   ++++  KG E     ++G  +++ D ++ R  
Sbjct: 456 GTAFEIVVNREQAVERAFEAARSHEGPALVLLLAKGDEHRQRRSDGYARIASDLELARRH 515

Query: 493 LG 494
           L 
Sbjct: 516 LE 517


>gi|319949411|ref|ZP_08023474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
 gi|319436923|gb|EFV91980.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
          Length = 436

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 130/438 (29%), Positives = 206/438 (47%), Gaps = 14/438 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +   + +    +      +  +   +  ++    G +F A+ G +  G  F   A+  
Sbjct: 3   TARQLADAVGARLLGDRSGADVDLIGATIRAQDCGPGILFAALPGTRVHGASFGATAVEA 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++        +  A +    P+LV    R  L   ++ + G    +  ++ +TGTS
Sbjct: 63  GASAVLTDPEG--IELMAAVAGRLPVLVHPAPRAVLGAVSAAVTGDPSADLDVVGITGTS 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   +  G  +  IG T +     A  +RLTTP        L+ + + G  
Sbjct: 121 GKTTTTYLVEAALEGCGHVAGLIGTTGSRVDGRALPSRLTTPEAPEFQALLARMRAAGAR 180

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL------ 237
            V+ E SSH L   R+DG++   G+F NL +DH+D+H +   YF AK RLF+        
Sbjct: 181 AVAAEVSSHALRLGRVDGVRFAVGAFLNLSQDHLDFHPSMDDYFRAKARLFDVEADPGSA 240

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +     A++  DD + + ++    +A            +   +      + Q+ T+    
Sbjct: 241 VWPAERAVVVIDDEWGRRLVGMRPDAVTVSAEPDADADWTAGESTPTDRDTQEFTVRGPR 300

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               D   PL G F V NALVA  +  A+G D A     L ++ V PGR E V    +  
Sbjct: 301 GLTVDVELPLMGRFNVANALVALAIVDALGGDVAAAAAGLMRVRV-PGRLEPV-VRGQDF 358

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           R+ VDYAH   ++  +L+++R  T GR+ VV G GGDRD GKRP MG  A ++AD+ +VT
Sbjct: 359 RVLVDYAHKPGAVAAVLRSVRAQTEGRVAVVLGAGGDRDPGKRPKMGAAAAEIADLVVVT 418

Query: 417 DDNPRSEDPEKIRAEIIH 434
           DDNPRSEDP  IRA +  
Sbjct: 419 DDNPRSEDPAAIRAAVRA 436


>gi|330895233|gb|EGH27571.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 297

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 95/289 (32%), Positives = 141/289 (48%), Gaps = 7/289 (2%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL RDH+DYH T +AY  AK +LF     K     +  DD + +E+      +     S
Sbjct: 7   TNLSRDHLDYHGTMEAYAAAKAKLFAWPDLKCRVINL--DDDFGRELAAVKQESRLITYS 64

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                 +++ +      +  + T+     +      L G F + N L A G  + +    
Sbjct: 65  QLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGALLGLDYAL 124

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +L+ L KL    GR + +G  +    + VDYAHT ++LE +L+ +R    GR++ +FG
Sbjct: 125 DEILKALPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFG 183

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRI 446
           CGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I  G            R 
Sbjct: 184 CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRG 243

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +AI   I   N  DV+V+AGKGHE    + NG+++   D       L +
Sbjct: 244 QAIAELIASANANDVVVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 291


>gi|330859320|emb|CBX69667.1| hypothetical protein YEW_CM10490 [Yersinia enterocolitica W22703]
          Length = 192

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 76/190 (40%), Positives = 103/190 (54%), Gaps = 5/190 (2%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           F V N LVA    +++G     +L     L  V GR E          + VDYAHT ++L
Sbjct: 4   FNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVF-NAPGKPTVVVDYAHTPDAL 62

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L   R    G++  VFGCGGDRD+GKRP+MG IA  LAD  +VTDDNPRSE+P+ I 
Sbjct: 63  EKALAAARLHCKGQLWCVFGCGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIV 122

Query: 430 AEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           A+I+ G+           R EA+ +AI      DV+++AGKGHE   +V N       D 
Sbjct: 123 ADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKGHEDYQLVGNRRLDY-SDR 181

Query: 487 DIIREILGLI 496
             +  +LG++
Sbjct: 182 VTVARLLGVV 191


>gi|149184156|ref|ZP_01862479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848134|gb|EDL62461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 299

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 143/299 (47%), Gaps = 11/299 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAK-----MRLFEELLPKESPAIIYADDAYSKEV 256
                  FTN+ +DH+DYH+T + Y +AK              K   AII  DD  +   
Sbjct: 1   CDFDIAVFTNITQDHLDYHRTMEEYRSAKSLLFSQLGNSYDEKKLKYAIINNDDPSAGFF 60

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +               Q    + + +   HN    T+    +       L G F +YN L
Sbjct: 61  IHSTAAHVVTYGV--SQDADFYAEDIELRHNGSSFTMVTPSERIKMDIQLAGRFNIYNVL 118

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA      G+    +   L+ ++ V GRFE V    +   + VDYAHT +SLE +LK I
Sbjct: 119 AAAASANISGVPLKNIKAALQSINGVSGRFEQV-EAGQDFSVIVDYAHTPDSLENVLKTI 177

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            TIT   +IVV GCGG+RD+ KRPIM +IA    D  + T DNPR+EDP  I A++  G+
Sbjct: 178 ETITDENVIVVVGCGGNRDRTKRPIMAEIACKYGDQVVFTSDNPRNEDPNAIIADMTTGL 237

Query: 437 P--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
               +I   +R EAI  A+ +  K DV+++AGKGHET  I+ +       D +  +  +
Sbjct: 238 KHTNYIVIIDRQEAINHAVSLAGKGDVVLIAGKGHETYQIIGDAVTS-FDDREAAKAAI 295


>gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 514

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/491 (21%), Positives = 191/491 (38%), Gaps = 38/491 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ LI  D  E +   +         +I+ V   S+ ++   +FVAI G + DGH FI
Sbjct: 1   MKLKTLI--DSIEYLEIKNGDEKTLESVEISSVEFHSKKVKKRTLFVAIKGYRVDGHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A+A GA A +V            +  +   + V N+R  L+  AS  +G+  +   + 
Sbjct: 59  KDAVASGAVAAIVED---------FVEEDILQIKVKNSRIALAKVASIFFGEPSKKLKVT 109

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYL 177
            +T ++GK+S A   + I  ++G ++   G   T  +     + LTTP    L      +
Sbjct: 110 GITASNGKTSTAFMTKCIYDKAGYNTGISGTVYTKYADVEIPSILTTPESKDLQYYFYDM 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            ++G+ HV +E SS   +  R         +F N+  +HI  H + + Y++ K RL    
Sbjct: 170 VNKGIDHVIMEVSSSAGELARAYATDFDIVTFNNITPEHIVNHGSFERYYHVKSRLIRHA 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +    +  +              L    +   I    +     K +  ++ + 
Sbjct: 230 KDDCVAILNSDFELINDLRNNTKAQVVTYSLKNNLEDISIDNLDLSTGFGKFKFIVNRDI 289

Query: 298 K---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           K          FD    + G   V NA+VA  + +  GID   +L  ++    V  RFE 
Sbjct: 290 KLKGITIKKQSFDVELKVAGYSSVMNAIVAITIGLVNGIDLDTILAGIQDFTGVERRFEV 349

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +     G +I  D+    N++E+ L  +  +    + +++   G R         ++   
Sbjct: 350 IFDE--GFKIVDDHFANKNNIEVTLDTLSKMDYKNLDILYAIRGSRGADLNEENAEVIAS 407

Query: 409 LADIA-----IVT--------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
             +       IVT         D    ++ E  +  +      F+ + N  EA+   I+ 
Sbjct: 408 WYERLKPREFIVTLSKDTVTWKDEVTDDELEAFKRVMSKHNIKFVLEDNLKEAVEKVIDG 467

Query: 456 LNKQDVLVVAG 466
               D+++ AG
Sbjct: 468 TKDDDLVLFAG 478


>gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
 gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
          Length = 536

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 140/500 (28%), Positives = 224/500 (44%), Gaps = 49/500 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            ++ D+R +  G IF A+ G    G  F   A A GA A++  ++ +    +A I     
Sbjct: 40  GITLDNRGLAPGEIFAALPGAHTHGARFAAAAAAAGASAVLTDASGAAAAEAAGIP---- 95

Query: 92  ILVVDNT------------RKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQIC 137
            ++V +             R+ ++  A+ +YG+  E     AVTGT+GK++ +  +  + 
Sbjct: 96  -VLVADVDGSGDGAGRAEFREIVAAVAADVYGRPAERLRTFAVTGTNGKTTTSFLLAHLL 154

Query: 138 QRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              G     IG     I       RLTTP    L   L+++   GVT + +E SSH L+ 
Sbjct: 155 GLLGRRVGLIGTVELRIGDAVVPARLTTPEAPDLHALLAHMVEAGVTDLVMEVSSHALEL 214

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
           HR+D ++    +FT+L +DH+D+H   + Y+ AK  LF     +   A++  DD + + +
Sbjct: 215 HRVDPVRFDLAAFTHLTQDHLDFHGDLEHYYAAKASLFTP--ARARRAVVSVDDEWGRRL 272

Query: 257 MKRAHNAGCRVLSVGYQGKF-----IHLKKVCAIHNKQQVTISVE-----GKDFDFLFPL 306
              A  AG  V ++  +G+        ++ V A  +    T++                 
Sbjct: 273 AGDARAAGIDVATLATRGEHAAAAAWTVRDVVAGADAMSFTLTGPGDVALTTSLTMPGAF 332

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                      A    +        +         VPGR E VG   R     VD+AH +
Sbjct: 333 NVANAALALATAIEGGVPAADVVEALAAAGGLRVAVPGRMEVVGAEPR---CVVDFAHNT 389

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +++ + L  +R  TSGR+ VV G  G+RD+GKRP MG+ A+  AD  IVTDD+P  EDP 
Sbjct: 390 DAVGIALAELRATTSGRLHVVLGATGERDRGKRPAMGEAAVLGADAVIVTDDDPHDEDPA 449

Query: 427 KIRAEIIHGI-------------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           ++RAE++ G                  E   R  AI  A+     +D ++VAG+GHET+ 
Sbjct: 450 QVRAEVLAGALRAAETARAAGRHVDVREVAPRSAAIAAAVAGAAPEDTVLVAGRGHETIQ 509

Query: 474 IVTNGEKKMSVDCDIIREIL 493
            V  GE+    D   +R  L
Sbjct: 510 EVA-GEELPLDDRVEVRAAL 528


>gi|149195164|ref|ZP_01872255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter
           mediatlanticus TB-2]
 gi|149134716|gb|EDM23201.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caminibacter
           mediatlanticus TB-2]
          Length = 408

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 163/386 (42%), Gaps = 36/386 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--FAQDNRLTTPSPIY 169
           K     + +TGT+GK++ A  +  + +  G +    G      +    ++  LTTP    
Sbjct: 52  KLKTKFIGMTGTNGKTTTAFVLSFLLKNLGFNVVTQGTEGLYFNLEKKENKTLTTPDIFT 111

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             K              +E SSH + Q+R++GI+  A   T+  +DH+DYH++   Y   
Sbjct: 112 TIKRAYKYKPD---FFVMEVSSHAIAQNRIEGIRFDAKIMTSFSQDHLDYHKSIDEYKKV 168

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K   F+              D   K +  +      +   +        +        ++
Sbjct: 169 KESFFQ--------------DESVKVINGKLKMENGKYSIIEIGNYDFKVYNKNLYVLEK 214

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +   +                    L      I      +++   L     V GR E V
Sbjct: 215 PIVNDIPMAGEFNKMNFS--------LALKTAEILTNSSFSILNSQLNNFKGVSGRMEIV 266

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              S+   I VD+AHT + +E +L +++    G  IVVFG GG RD+ KR +MG++A   
Sbjct: 267 ---SKNPLIIVDFAHTPDGIEKVLSSVK----GEKIVVFGAGGKRDKEKRELMGEVASKY 319

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A+  I+T+DNPR E+P KI  +I  G+   +    +R EAI+ AI++     +L V GKG
Sbjct: 320 AEFLIITNDNPRCEEPMKIANDIAKGVSIPYEIILDRKEAIKKAIKLAKNGKILFVLGKG 379

Query: 469 HETVHIVTNGEKKMSVDCDIIREILG 494
            E      N ++K   D ++I EILG
Sbjct: 380 DEEFIEYCNKKEK-FKDKNVILEILG 404


>gi|229139234|ref|ZP_04267809.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|270000495|ref|YP_003329007.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|217065749|gb|ACJ79999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|228644293|gb|EEL00550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 252

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 9/253 (3%)

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD   +   K               G  +  K +       +  +S    + +    
Sbjct: 1   MNADDPSVEYFKKITSAEVITYGIHN--GADVQAKNITLRPKGIRFLVSSFNGEIEVNLN 58

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G F VYNAL A  + +  GI    + + L  L  + GR E +   ++   + VDYAHT
Sbjct: 59  LVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEII-DENQDFLVIVDYAHT 117

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++LE +L  I   + G++I VFGCGGDRD  KR IMG IA   +D   +T DNPRSEDP
Sbjct: 118 PDALENVLSTISEFSKGKVITVFGCGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDP 177

Query: 426 EKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
           + I  +I  G        +  + +R  AI  AI M +  D++++AGKGHET  I+ +   
Sbjct: 178 QAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKDST- 236

Query: 481 KMSVDCDIIREIL 493
               D +  R+ +
Sbjct: 237 IHFDDKEKARQAI 249


>gi|332358296|gb|EGJ36122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK355]
          Length = 400

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 101/411 (24%), Positives = 175/411 (42%), Gaps = 18/411 (4%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             P+L+V++ ++ +SL A   Y    + +  LA TGT GK++ A F  QI  +S   +  
Sbjct: 2   GIPVLLVNDVKQAMSLLAMEFYDHPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 61

Query: 147 -IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
               T+        + LTTP  + L K ++   S   TH+ +E SS    + R+ G+   
Sbjct: 62  STMNTTLDGETFFKSTLTTPESLDLIKMMAQALSNDRTHLIMEVSSQAYLKKRVYGLTFD 121

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G F N+  DHI      +          + LL   S A+I        +++K    +  
Sbjct: 122 VGVFLNISPDHIGPI---EHPTFEDYFYNKRLLMDNSRAVIVNSGMDHFQIVKEQVASME 178

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                        +    A   +    ++       +   L G F   NA+ AA  C+ +
Sbjct: 179 HDFYGADSSNT--ITDSQAFSFEATGKLA-----GHYDIQLIGRFNQENAVAAALACLRL 231

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     +         VPGR E +   + G +++VDYAH   SL  +L  ++    G+II
Sbjct: 232 GASLEDIK-KGIAATRVPGRMEVLTQKN-GAKVFVDYAHNGVSLSNLLSVVQEHQKGKII 289

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKG 443
           ++ G  G++ + +R   G +     ++  I+T D+P  EDP  I  EI   I     +  
Sbjct: 290 LLLGATGNKGESRRKDFGLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVEKIA 349

Query: 444 NRIEAIRTAIEML-NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +R EAI+ A+ +   + + +++AGKG +   IV   +     D  +  + L
Sbjct: 350 DREEAIKKALSLTEREGEAVILAGKGADAYQIVEGEKVPYPGDYALAEKYL 400


>gi|229817371|ref|ZP_04447653.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
 gi|229785160|gb|EEP21274.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
          Length = 513

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 104/516 (20%), Positives = 193/516 (37%), Gaps = 43/516 (8%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLF 59
            +L+ +       QL    +   +     ++ D+R +    + V   G       DG   
Sbjct: 15  HNLLREIINGDSWQLDTAHIDGVDTPFTNLTYDTRTVAPNTLLVC-KGRFRPEFLDGTE- 72

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
                 +G  A V  S  S            P L+V++ RK LSL A+  Y     ++  
Sbjct: 73  -----ERGLAAYVAESDLSSHTTK-------PGLIVNDARKALSLLAAAFYDHPERDLTV 120

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKAL 174
           +  T  K    +        +  S+ +    S+           ++ LTTP  +   + +
Sbjct: 121 IGITGTKGKTTTAYFTQSILNTYSAGRCALFSSVDNCLDGHTYAESDLTTPESLDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                 G+ ++ +E SS     +R+ G+     +F N+  DHI      +          
Sbjct: 181 RQAVDNGMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISP---IEHPTFEDYFHC 237

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  +   S A++   D    ++++    A    ++    G    +      +NK+    +
Sbjct: 238 KRQIIANSRALVLGADCDHHDLLREDAKAAGIDVTEFAMGGDAQVVTRLDPNNKEGFIAT 297

Query: 295 VEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +   +           + GEF + NA  A  +    G+ ++    H  +   VPGR E +
Sbjct: 298 ISDGERSVTLEPMALDMTGEFNIVNAAAAIAIAHRAGVPASSQAMHAVQNVQVPGRMERI 357

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406
                   +YVD+AH   S++ ++  I  +    + RI +V G  G +   +R  + K A
Sbjct: 358 R-GGDNLLVYVDFAHNYISVKSLVDEIERVYGERNPRITLVSGTTGGKAIDRREGIVKGA 416

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNK-QD- 460
           L   +  I T D+P  EDP  I  ++   +            R +A+  AI    +  D 
Sbjct: 417 LGRVESFIFTLDDPNFEDPTDIARQMQSYVTDPAAQTQIVMPREDAVAKAIADAREHNDR 476

Query: 461 --VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             V++V GKG ET +I+         D  ++R +LG
Sbjct: 477 FNVVLVIGKGDETRNIINGKPVPYEGDSVVVRRVLG 512


>gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 431

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 110/403 (27%), Positives = 182/403 (45%), Gaps = 13/403 (3%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL  +L +        +I  ++ DSR ++ G ++ A+ G +  G  F  QA   GA A
Sbjct: 32  LGELAARLGVQTPGAA--EITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAAA 89

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           ++   + +         +  P+LV +N R  +   A+ +YG   ++   + +TGTSGK++
Sbjct: 90  VLTDESGA----ERAAATGLPVLVTENPRGRMGELATEIYGHPGDDLLQIGITGTSGKTT 145

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            A  V+   + +G S+  IG            +  TTP    L    + +  +G   V++
Sbjct: 146 TAYLVEGGLKAAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGADAVAM 205

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SSH L   R+DG       F NL  +H+++H   + YF AK +LF     +E+     
Sbjct: 206 EVSSHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFQAKAQLFTPRRSREAVVNF- 264

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPL 306
            DD Y + ++  A        + G+       + V    +    T      +      PL
Sbjct: 265 -DDEYGRRLVDEATVPVTTFSAEGHPDADWRAEDVEVGTHGSTFTAVGPAGERVRAQAPL 323

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F V N L A       G+D     + +  +  VPGR E V    +     VDYAH +
Sbjct: 324 PGPFNVANTLAAVVTLAVAGLDPQTAADGIAAVPGVPGRLERVDAG-QPYLAVVDYAHKT 382

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +++E +L+++R +T G++ +V GCGGDRD+ KR  MG  A   
Sbjct: 383 DAVESVLRSLRKVTKGKVHIVLGCGGDRDRTKRGPMGAAAARN 425


>gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 501

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 111/488 (22%), Positives = 196/488 (40%), Gaps = 43/488 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  V+SDSR ++ G+IFVAI G KEDG+ FI +A+ +GA  I   +   ++D      
Sbjct: 6   IEIKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIKDCIVK-- 63

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF--VQQICQRSGLSSF 145
                  V + RK L    ++ YG   + +L +  T       +   +  I + SG  + 
Sbjct: 64  ------KVPDCRKELGNLCNQFYGYPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAG 117

Query: 146 QIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
            IG     I +    ++LTTP    +   L+ +  +GVT   +E SSHGL  +R+ GI  
Sbjct: 118 LIGTLFIKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNRVHGIDF 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE------ELLPKESPAIIYADDAYSKEVMK 258
                TN+  DH+++H+    Y N+K +LF+        L               KE++ 
Sbjct: 178 DIAIHTNINWDHLNFHKNINDYVNSKKKLFDSLSEGKVALINHDDQYGIKMLEGKKEILA 237

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---ISVEGKDFDFLFPLPGEFQVYNA 315
             +    +         F           +   T   + +E  ++     L G   +YNA
Sbjct: 238 ITYGLSSKSTVTASSIDFGFTTSFTYCLQRGITTLEGVEIEAFEYPVTSNLIGNHNIYNA 297

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+A   C+ + I    +++ ++    V  R +          +  DY H  +S E +   
Sbjct: 298 LLAISTCLLLNIPIDKIVQSIKNYPAVQRRMQI--IYRDKFTVIDDYCHNPSSYEAVFNA 355

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDD-------NPRSE 423
           I+ +    + +V G  G+R         ++     D       ++TD        N   E
Sbjct: 356 IQNLQYNNLHIVNGIRGNRGVHINKKNAEVLKQWYDILNIKKLVITDSTDFIDPMNSALE 415

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
           + + I  E+       F  + N  +AI   I  L + D+L++ G        +  G++  
Sbjct: 416 EEKNICFEVFNSSAIPFQYERNLRDAIEEGIRDLRQGDILLLLG-----AQSMDKGKQLF 470

Query: 483 SVDCDIIR 490
               +II+
Sbjct: 471 F---EIIK 475


>gi|210631902|ref|ZP_03297114.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
 gi|210159827|gb|EEA90798.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
          Length = 552

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 125/523 (23%), Positives = 213/523 (40%), Gaps = 36/523 (6%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           + L   D  ++++   +    + +    ++ ++ DSR +    +FV   G       F+ 
Sbjct: 31  KPLTLFDLVDVLHASDVEARVFGDGAACVDGMAIDSREVAPRNLFVC-KGAGFRPA-FLE 88

Query: 62  QAIAQGAEAIVVS---SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
            A+A GA A +        S+        + TP LVV + R+ ++L A  +Y       +
Sbjct: 89  SAVAAGAAAYLCEGVGEGLSIPSELVAAAAVTPALVVSDVRRAMALVAPVIYRHPEDQLH 148

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALS 175
           ++ +TGT GKS+VA  ++ I   +G     +G           ++  TTP    L + L 
Sbjct: 149 VVGITGTKGKSTVAYMLRSILVAAGQEPSILGSIETDDGKVRYESHNTTPEAPDLWRHLR 208

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRL 233
                G   + +E SS GL   R+ G+    G F N+GRDHI    H   + YF +K+R+
Sbjct: 209 NTVDAGRRTMVMEVSSQGLKYDRVLGLPFEIGCFLNIGRDHISGVEHPDFEDYFASKLRI 268

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F +             D   +        A   V   G       +  V  +     VT 
Sbjct: 269 FNQCEVAVVNLATDHVDRVLQAAKSAPCVATFAVEHAGEGSHGGKVWPVEPLFIASGVTQ 328

Query: 294 SVEGK----------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              G                 +      +PG F V NAL A  +   +G+    +   L 
Sbjct: 329 LPTGGLAFTVRERAAEGEIACEEHIELGMPGLFNVDNALAAISMARLLGVGYDAIRAGLA 388

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ 396
           ++ V PGR E V +        VDYAH   S E + K+++      R++ +FG  G + Q
Sbjct: 389 QIRV-PGRMELVSSADGHVLAIVDYAHNELSFETLFKSVKAEYPDRRVVALFGAPGGKAQ 447

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAI 453
            +R  + ++A   AD  + T+++P  +  E I AE++   P         +R EA+RT +
Sbjct: 448 ERREALPRVAGAYADHLVYTEEDPAHDRVEDICAELVKNTPAGVSHEVILDREEAVRTVL 507

Query: 454 EML---NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           E      +  V+++  KG E      +   ++  D  I RE+L
Sbjct: 508 ERALACGEPSVVLLLAKGDEETMHRGDEYPEVKSDLAIAREVL 550


>gi|306822449|ref|ZP_07455827.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553994|gb|EFM41903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 515

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 96/516 (18%), Positives = 180/516 (34%), Gaps = 40/516 (7%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFI 60
             L+ +        L+   +   +     ++ D+R ++ G + V        G     F+
Sbjct: 15  HHLLDEVITPERWSLNADGIDNADVPFTHITYDTRTVREGTLLVC------KGRFRPEFL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                +G  A V    +S         +  P L+V++ RK LSL ++  YG     +  +
Sbjct: 69  DGLKERGLVAYVSERDFSDH-------TEVPGLIVNDARKALSLLSAAFYGMPQNELTVI 121

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISSFAQDNRLTTPSPIYLAKALS 175
             T  K    +        +  S+ +                  ++LTTP  +   + + 
Sbjct: 122 GITGTKGKTTTAYFTQAILNAYSNGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMR 181

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +  G+ ++ +E SS     +R+ G+    G+F N+  DHI      +          +
Sbjct: 182 EAADNGMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHIS---DIEHPTFEDYLYCK 238

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS- 294
             L   + A +   DA   ++++    A    L+                        S 
Sbjct: 239 RQLAYHARAFVLNADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSA 298

Query: 295 -----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                      +F   L G+F   NAL A  L    G+       H  +   VPGR E  
Sbjct: 299 FSIAANGHDLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSAAMHAMESVHVPGRMELF 358

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGKRPIMGKIA 406
                     VDYAH   S+  ++  +      R     +V G  G++   +R  + + A
Sbjct: 359 TGTDGDTVAIVDYAHNYTSVRALIDFVEQRYCERKPRITLVAGSAGNKAFDRRQEIVEAA 418

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD-- 460
            D     + T ++  +E    I  E++  +           +R++AI +A+E  +  D  
Sbjct: 419 QDRIARFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGL 478

Query: 461 -VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            V+++ GKGHE      N       D  ++  +L +
Sbjct: 479 DVILIIGKGHERWIKDLNSHVAYEGDDCVVERLLNV 514


>gi|171742536|ref|ZP_02918343.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283456378|ref|YP_003360942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278150|gb|EDT45811.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283103012|gb|ADB10118.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 515

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 98/516 (18%), Positives = 182/516 (35%), Gaps = 40/516 (7%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH---LFI 60
             L+ +        L+       +     ++ D+R ++ G + V        G     F+
Sbjct: 15  HHLLDEVITPERWSLNADGTDNADVPFTHITYDTRTVREGTLLVC------KGRFRPEFL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                +G  A V    +S         +  P L+V++ RK LSL ++  YG     +  +
Sbjct: 69  DGLKERGLVAYVSERDFSDH-------TEVPGLIVNDARKALSLLSAAFYGMPQNELTVI 121

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALS 175
             T  K    +        +  S+ +    S+           ++ LTTP  +   + + 
Sbjct: 122 GITGTKGKTTTAYFTQAILNAYSNGRCALFSSVDNCLDGHTYVESELTTPESLDAFRMMR 181

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +  G+ ++ +E SS     +R+ G+    G+F N+  DHI      +          +
Sbjct: 182 EAADNGMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHIS---DIEHPTFEDYLYCK 238

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS- 294
             L   + A +   DA   ++++    A    L+                        S 
Sbjct: 239 RQLAYHARAFVLNADADHADLIREDAQAAGIPLADFALRTDDAPTNATLTARPSNAEHSA 298

Query: 295 -----VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                      +F   L G+F   NAL A  L    G+       H  +   VPGR E  
Sbjct: 299 FSIAANGHDLGEFSLSLAGDFNYANALAAVALAHEAGVPFDSAAMHAMESVHVPGRMELF 358

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     VDYAH   S+  ++  +         RI +V G  G++   +R  + + A
Sbjct: 359 TGTDGDTVAIVDYAHNYTSVRALIDFVEQRYGERKPRITLVAGSAGNKAFDRRQEIVEAA 418

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD-- 460
            D     + T ++  +E    I  E++  +           +R++AI +A+E  +  D  
Sbjct: 419 QDRIARFVFTAEDTDTEPYIDICNEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGL 478

Query: 461 -VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            V+++ GKGHE      N       D  ++  +L +
Sbjct: 479 DVILIIGKGHERWIKDLNSHVAYEGDDCVVERLLNV 514


>gi|167614194|gb|ABZ89698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 362

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 102/363 (28%), Positives = 165/363 (45%), Gaps = 15/363 (4%)

Query: 143 SSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +  +G        +  D + TTP  IY+   L     +    V++E SSHGL Q+R+  
Sbjct: 3   KTATMGTLGNGFLKSLHDTKNTTPEAIYIQSFLYMAVEKKTKLVTMEVSSHGLVQNRVKE 62

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I    G  TN+ +DH+D+H   + Y +AK   F +   K    I+ A+D   +  ++R  
Sbjct: 63  IPFHIGILTNISQDHLDFHGNMENYKSAKWSFFSK--HKIKKVILNANDKCGQIWLRRLF 120

Query: 262 NAGCR------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           N               Y  K+I+   +    N   +T        +    L G+F   N 
Sbjct: 121 NVYTIAVTIKDSTQKKYATKWINATHLQYDKNGTNITFESSWGSGNIKSYLIGDFNAINL 180

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L++    + +G     ++    K+  + GR E V  N+      +DYAHT ++L+  L +
Sbjct: 181 LLSLACLLELGYKIYDLINTSYKIQPINGRMETVFHNN-KLVFIIDYAHTPDALKKALNS 239

Query: 376 IRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           IR   +      +FGCGG+RD+ KRP+MG IA  +A+  I+T+DNPR+E  E I  +I++
Sbjct: 240 IRLHYNQSYIWCIFGCGGNRDKKKRPLMGSIAEKIANKVIITNDNPRNEKEENIINDILN 299

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           G           NR +AI  A        ++ +AGKGHE   I+ N       D  ++  
Sbjct: 300 GCKNPKKIFIIPNRKQAISYAFHQSQDDHIIFLAGKGHEDKQIIQNKHINY-SDKKVVLN 358

Query: 492 ILG 494
           +L 
Sbjct: 359 LLE 361


>gi|288940178|ref|YP_003442418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum
           DSM 180]
 gi|288895550|gb|ADC61386.1| UDP-N-acetylmuramyl-tripeptide synthetase [Allochromatium vinosum
           DSM 180]
          Length = 487

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/387 (26%), Positives = 156/387 (40%), Gaps = 40/387 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKA 173
             + VTGT+GK++   +++ I    G     IG            +   T+P  I L + 
Sbjct: 115 RFIGVTGTNGKTTTVKYLESILAAHGRRVLSIGTLGVFLDGVRQVETGFTSPPLIELRRL 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L          V +EASSH LDQ R+ GI      +TN  +DH+DYH+ + +YF AK   
Sbjct: 175 LHAH-QDQADVVVMEASSHALDQGRVAGIPFQDAGWTNFTQDHLDYHRDEASYFAAKAH- 232

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                                 ++      G    +       +       +  +     
Sbjct: 233 ----------------------LLDLIRPGGRLYCTSRAVADRLAALGPTPVPVEVLEPA 270

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCI--AIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  +       L       N  +A  L       + +    +H   L  V GRF     
Sbjct: 271 RLPPEAIAAKPFLALAHNRANYALAVALAERVLDAMPTDETRQHWRHLQPVDGRF--DCR 328

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                 I +D+AHT ++L+ IL  IR      R++ +FGCGGDRD+ KRP+MG      +
Sbjct: 329 VHGNRAIVIDFAHTPDALDTILGAIREGFPDARVVTLFGCGGDRDRSKRPLMGAAVARHS 388

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEM--LNKQD---VL 462
           D  IVT DNPR E PE+I  +I+ G P    +    +R EAI    +       D   V 
Sbjct: 389 DAIIVTSDNPRHEPPERIIDDILTGFPEDQDYSVVVDRAEAIARLFDQLAARPDDEPWVA 448

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDII 489
           ++AGKGHE   I  +G K    D + +
Sbjct: 449 LIAGKGHERY-IDRDGHKTPYSDQEQV 474


>gi|238060252|ref|ZP_04604961.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC
           39149]
 gi|237882063|gb|EEP70891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. ATCC
           39149]
          Length = 331

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 103/315 (32%), Positives = 147/315 (46%), Gaps = 15/315 (4%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH L   R+ G++   G +TN G DH+D+H     YF AK +LF+          +
Sbjct: 15  MEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHADSADYFAAKAQLFDG------RCAV 68

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
              +     +      A     + G      +   V      Q+ T    G         
Sbjct: 69  EVLNHDDPALRPLFTPATVSYSAAGDPTATWYATDVDGEGYAQRFTAHGPGGLTVPAGVA 128

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   V NAL+A    +  G+D+      +     VPGR E V + +   R  VDYAH 
Sbjct: 129 LPGRHNVANALLAIAALVGAGVDAPTAAAGVAACGGVPGRLELV-SAAGPVRGVVDYAHK 187

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++++   L  +R +++GR+I V G GGDRD+GKRP MG  A   AD+ +VTDDNPR+E+P
Sbjct: 188 TDAIVAALAALRELSAGRLICVIGAGGDRDRGKRPEMGAAAARGADVVLVTDDNPRTEEP 247

Query: 426 EKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
             IRAE++ G          +E G R  AI  A+ +    DV+ V GKGHE    V  GE
Sbjct: 248 AAIRAEVLVGAYAAATPARIVEVGGRRAAIDEAVRLAAPGDVIAVLGKGHERGQEVG-GE 306

Query: 480 KKMSVDCDIIREILG 494
                D   + + L 
Sbjct: 307 VLPFDDRTELADALR 321


>gi|308811498|ref|XP_003083057.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
 gi|116054935|emb|CAL57012.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
          Length = 657

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 113/578 (19%), Positives = 220/578 (38%), Gaps = 97/578 (16%)

Query: 6   LIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L+ + F +  ++       +  + +I+ +++D   + +G +FV  VG +  G     +A+
Sbjct: 58  LLREIFADAEVDAEWYGVDEDEDVEISGIANDINALLSGDLFVCPVGGEA-GASLAREAV 116

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
           A G  AIV S             ++ P  VV N  + L+  A   YG        +A+TG
Sbjct: 117 AAGPVAIVASERVEGV-------ADVPCAVVANVDEALADIARVFYGDPSTALTAIALTG 169

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTP-------------- 165
             GK++ +  V+ + + + +    +G             D +LTT               
Sbjct: 170 AVGKTTTSYLVKSVFEAADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESDEEDTTRD 229

Query: 166 -----------------------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                                    +   +  + ++  G     +E S+  + +    G+
Sbjct: 230 RTSTAPGWLAPYRGKYEFEELGADALQFQQLTAGIADNGANAAVMEVSAEQVRRKATRGM 289

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-- 260
                + T+      +Y+     Y +    +F+ L   E+   +   D    ++ +    
Sbjct: 290 NFDIVALTSFEGARKNYNGADSEYSSFVADVFKVLENAETQRGVINIDEEDADLCREYAS 349

Query: 261 -HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                     +G     ++  +V     +  +++S    + + +  L GE  +     A 
Sbjct: 350 GVPVVTYSTQIGNTAADVYPARVDFSLFETAISLSTPAGNVEVVLGLVGEHMIGPICCAT 409

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +A  I   ++   LE   V+PGR E V        + VD A+T   +E +++++R  
Sbjct: 410 AIGLAAEISLDVIAAGLEACEVIPGRMELVDMGQ-DFSVLVDNANTPEGIERVIQSVRAA 468

Query: 380 TSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
              R+I V GC GD   ++G+R ++GK+A D++D+  +T+D+P++EDP KI  +I  G  
Sbjct: 469 NCRRVITVIGCEGDMGDERGERAVIGKVAHDMSDVLFITNDSPKTEDPYKILDDICGGFR 528

Query: 438 GFIEK---------------------------------------GNRIEAIRTAIEMLNK 458
             I +                                        +R  AIR AI M  +
Sbjct: 529 NEIYENDKIKDEALFPFLKDMYEVHENAQYECMRLQNLVRRYVMVDRFHAIRAAIGMAER 588

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            DV+++ G+G +   +V   EK    D    R+ L  I
Sbjct: 589 DDVVLILGRGSKDYFVVGR-EKHWFDDVVEARDALQKI 625


>gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
 gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
          Length = 480

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 96/461 (20%), Positives = 170/461 (36%), Gaps = 33/461 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
             +++ DSR ++ G+ FVAI G K DGH FI +AI +GA  I               RS 
Sbjct: 12  FTDITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVIFTEKEIKS-------RSG 64

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            PI+ V ++R  L   A+  Y        ++ VTGT+GK++    +  +    G +S  I
Sbjct: 65  IPIVRVKDSRSILGKLAAEFYNYPSRKLKLIGVTGTNGKTTTTHLIYHLLNYKGKNSGLI 124

Query: 148 GPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G              LTTP P+ L K L  +    + +  +E SSHG+   R+ G +   
Sbjct: 125 GTVKVDTGKRTIPGNLTTPEPVTLQKYLDEMVKHNLNYACMEVSSHGIKLKRITGSQFAI 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--AYSKEVMKRAHNAG 264
              TN+  DH D H     Y   K    E+  P     +   D   +    + K     G
Sbjct: 185 KVGTNITVDHFDLHSDFSDYVQVKKSFLEDKNPHTLVLLNNDDHYLSSFGNIAKNQIGYG 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE------FQVYNALVA 318
               +        +             +I     +      +P          +YNALVA
Sbjct: 245 ITTNTDITAENINYSGITTDFVYSLNKSIKTSQGNKIGPMKVPINLKIPGEHNIYNALVA 304

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             + +  G+    + +   +   +  RF+ +        I  D AH   S   + K +  
Sbjct: 305 ITIGLYYGLTPEKIQDFFGQFRGIWRRFQVIYNK--DFAIIDDCAHNPGSYGAVFKTVSQ 362

Query: 379 ITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLADIAIVTD---------DNPRSEDP 425
           +    +++V    G+R    ++G    +GK      +  ++T          D    E+ 
Sbjct: 363 LKYKNLLIVNAIRGNRGAQINKGNAETIGKWLKKFHNYYLLTTNCNDVVKPIDKVSPEEE 422

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +     +      +        A++  ++ +   D++++ G
Sbjct: 423 KVFLQALDKNNIKYSHLDQLKPALKNVLDKVTPDDIILLLG 463


>gi|289574841|ref|ZP_06455068.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis K85]
 gi|289539272|gb|EFD43850.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis K85]
          Length = 290

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/276 (29%), Positives = 114/276 (41%), Gaps = 13/276 (4%)

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
             +  T +   +  +R           A             +            G     
Sbjct: 8   PAWPTTSRPRRHCSIRTRHCAPAPPWCASTTTP---GARWRRGPPTRSPSAPPTGPHTGA 64

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             + +      +Q   I   G        LPG + V N LVA  +   +G+     +  L
Sbjct: 65  PRMWRPRTRGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGL 124

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            ++ V PGR E +     G    VDYAH   +L  +L  +      R+ VVFG GGDRD 
Sbjct: 125 REIRV-PGRLEQIDRGQ-GFLALVDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDP 181

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIR 450
           GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G          +E  +R +AIR
Sbjct: 182 GKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIR 241

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            A+      DV+++AGKGHET      G  +   D 
Sbjct: 242 HAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 276


>gi|330874999|gb|EGH09148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 196

 Score =  177 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 69/184 (37%), Positives = 98/184 (53%), Gaps = 5/184 (2%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N L A G  + +      +L+ L KL    GR + +G  +    + VDYAHT ++LE +
Sbjct: 7   SNVLSAVGALLGLDYALDEILKVLPKLEGPVGRMQRLG-GADKPLVVVDYAHTPDALEKV 65

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ +R    GR++ +FGCGGDRD+GKRP+M ++   LAD   VTDDNPRSE P  I  +I
Sbjct: 66  LEALRPHAKGRLLCLFGCGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 125

Query: 433 IHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDII 489
             G            R +AI   I   N  DV+V+AGKGHE    + +G++    D    
Sbjct: 126 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKGHEDYQEI-DGQRHPFSDLQEA 184

Query: 490 REIL 493
            + L
Sbjct: 185 AKAL 188


>gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii
           DSM 519]
 gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii]
          Length = 516

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 99/485 (20%), Positives = 188/485 (38%), Gaps = 38/485 (7%)

Query: 10  DFPELINQLSIFPMQWR---ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           D   L+  + I         +  I  ++  S  ++ G +F  I G K DGH ++  A  +
Sbjct: 3   DVASLLKGIEILEENRPLSHDHNIQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNK 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
           GA   VV         S     + P  +V + R  L+L A   Y    +   ++ +T T+
Sbjct: 63  GAVGAVVE--------SIQDNIDIPQYLVSDARHSLALCACNFYNHPSKFMKMIGITATN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++ A  +  I + +   +  +G            + LTTP  + L   +  +   G+T
Sbjct: 115 GKTTTAFMIDNILENNNFKTGLVGTVLIKVGDEQIASDLTTPESLDLQNYIYRMKENGLT 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           HV++E SS  ++  R+ GI      F N+ R+HID H+T + Y   K  L          
Sbjct: 175 HVTMEVSSSAIELDRIAGIDYDIVIFNNISREHIDLHETFENYVALKSSLITNAKKGSWA 234

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--------- 294
            +    +  +  V K   N     ++            + +   K  V IS         
Sbjct: 235 ILNMDCEEAASLVNKTEANVLTYGVNNDNAMILCKNLDLSSGRGKFTVEISKLFSINGYL 294

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              + F+    +PG   VYNA+ A    +   +   ++ E       V  RFEF+  N  
Sbjct: 295 YMNQSFEISLSVPGYHSVYNAMAAIAAALICKVPIDVIQESFLNFKGVERRFEFIYEN-- 352

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA- 413
             +I  D+   + ++++ ++ +  +   ++ +V+   G R         +  +  A    
Sbjct: 353 DFKIIDDHFANAGNIDVTMETLNFMKYNKLHLVYAIRGSRGPIVNNENAQAIVTWAKKLN 412

Query: 414 -----------IVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
                        T+ +  +++ E + +EII+          +  +AI  A+    + DV
Sbjct: 413 LSEIIATKSADYTTEKDIVTDEEEAVFSEIINSSKLKLELYEHLSDAIGEALNRAKEDDV 472

Query: 462 LVVAG 466
           +++AG
Sbjct: 473 ILLAG 477


>gi|218458611|ref|ZP_03498702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli Kim 5]
          Length = 167

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/150 (51%), Positives = 98/150 (65%), Gaps = 1/150 (0%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E VG    G   YVDYAH  ++LE +L ++R  T+GR++VVFGCGGDRD+GKRPIMG+
Sbjct: 15  RLELVGHTKDGALAYVDYAHKPDALENVLSSVRPFTTGRVVVVFGCGGDRDRGKRPIMGE 74

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           IA  LAD+ IVTDDNPRSE+P  IRAEI+   P   E  +R  AIR A+ ML   D L+V
Sbjct: 75  IACRLADVVIVTDDNPRSEEPASIRAEIMAAAPCAAEIADRAIAIREAVAMLTSGDTLIV 134

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           AGKGHE    + +   +   D   +R+ L 
Sbjct: 135 AGKGHEEGQTIGSVTLQ-FSDHAEVRKALE 163


>gi|224373699|ref|YP_002608071.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nautilia profundicola AmH]
 gi|223588723|gb|ACM92459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nautilia profundicola AmH]
          Length = 410

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 179/426 (42%), Gaps = 48/426 (11%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGK-------HPENILAVTGTSGKSSVASFV 133
           D +  +  +   L      K+    +  +  K            + +TGT+GK++ A  +
Sbjct: 14  DNTKELSEDKLFLKTKQNEKYSKDISKYITPKELIQNLTLKTKFIGITGTNGKTTTAFVL 73

Query: 134 QQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
             + Q++G S    G           +   LTTP        +            +E SS
Sbjct: 74  GHLLQQAGYSVGIQGTEGFYLNGEKIEAKTLTTPPIFTT---IKRAVKYEPDFYIMEVSS 130

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           H + Q R++GI+  A   T+  +DH+DYH+T + Y   K   F +   K           
Sbjct: 131 HAIVQQRIEGIEFTAKILTSFSQDHLDYHKTMEEYKRVKESFFRDETVKVF--------- 181

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            + +++ +      +     +     +L  +               K      P+ GEF 
Sbjct: 182 -NGKLLVKNEKCKVKSGGYEFNLNCKNLYVLE--------------KPIVDDIPMAGEFN 226

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N  +A      +    +L   +      VPGR E V   S+   + +D+AHT + +E 
Sbjct: 227 KMNFSLALKTASLLTNS-SLSTFNFSLFEGVPGRMEIV---SKKPLVIIDFAHTPDGMEK 282

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L  +     G+ IVVFG GGDRD+ KR +MG++A   A+  I+T+DNPR ED  +I  E
Sbjct: 283 VLSAV----EGKKIVVFGAGGDRDKDKRHLMGEVADKYAEYIIITEDNPRCEDSNEICKE 338

Query: 432 IIHGIPG--FIEKGNRIEAIRTAIEMLNKQD-VLVVAGKGHETVHIVTNGEKKMSVDCDI 488
           I  GI    +    NR +AI+ A+++  K++  L++ GKG E      + +     D + 
Sbjct: 339 IAKGIKSIPYKIISNRKDAIKEAVDIAKKKNYTLMLLGKGDENYIQYCDKKIDY-SDRET 397

Query: 489 IREILG 494
           ++++L 
Sbjct: 398 VKKLLS 403


>gi|330892872|gb|EGH25533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 172

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 4/152 (2%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + +G       + VDYAHT ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M +
Sbjct: 14  RMQRLGGCRTKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAE 73

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           +   LAD   VTDDNPRSE P  I  +I  G            R +AI   I   N  DV
Sbjct: 74  VVERLADGVWVTDDNPRSESPASIFDDIRPGFAAADKVRFIEGRGQAIAQLIASANADDV 133

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +V+AGKGHE    + +G++    D     + L
Sbjct: 134 VVLAGKGHEDYQEI-DGQRHPFSDLQEAAKAL 164


>gi|183602454|ref|ZP_02963820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683232|ref|YP_002469615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191192|ref|YP_002968586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196598|ref|YP_002970153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218373|gb|EDT89018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620882|gb|ACL29039.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249584|gb|ACS46524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251152|gb|ACS48091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177305|gb|ADC84551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794185|gb|ADG33720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 516

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/511 (18%), Positives = 177/511 (34%), Gaps = 33/511 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+++     +  ++   ++  E     ++ D+R +  G + V   GN      ++ QA 
Sbjct: 16  NLLHEIITPHMWTMNAASVENNEVPFTAITYDTRTVTPGSLLVC-KGNFN--PKYLEQAN 72

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G  A V ++ YS         ++ P L+V + +K LS+ A   Y  HPE  L + G +
Sbjct: 73  KLGMAAYVATNDYSA-------YTDAPGLIVSDDKKALSILAQAYYD-HPERQLTLIGIT 124

Query: 125 GKSSVASFVQQIC----QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
           G     +            SG ++                ++ LTTP  +   + +    
Sbjct: 125 GTKGKTTTAYYTHAIINALSGNTTALFSSVDNCVDGMHYVESDLTTPESLDAVRMMREAV 184

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           + G+ ++ +E SS     +R+        +F N+  DHI   +          +      
Sbjct: 185 NNGMKYLVMEVSSQAYKVNRVYDFHFDVAAFLNISPDHISPIEHPSFENYLWCKRQIIRN 244

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                    +D           +       ++        +  V       + T      
Sbjct: 245 ADMLVLGERSDHEQLLLEDAELNRVPVSTFALADSPAQSDIADVTCAPTNMEHTAFDYFV 304

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-----ALVLEHLEKLHVVPGRFEFVGTNS 353
           D + L  L    +       A   +AI  D                  + GR E +  + 
Sbjct: 305 DGERLGSLTLAMEGDFNYANAAAALAIAHDIGMDVSDPRALASLADVRISGRMEEMHDSR 364

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                 VDYAH   S+  +L  +          I ++ G  G++   +R  + K A D  
Sbjct: 365 SNTLAIVDYAHNFASVNALLDFVEQRYGAEHPHITLITGSAGNKAYDRREGIVKAAQDRV 424

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQD----VL 462
              I+T ++  +E  E+I +E+ + +           +R EA++ A++     D    +L
Sbjct: 425 QKLILTAEDTDTEPIEQICSEMANNVTNEDLDVQTILDRAEAVKHAVDEARAADGGLSIL 484

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           ++ GKG E      N       D  IIR + 
Sbjct: 485 LLIGKGDEQWIKDRNIHTPYEGDSQIIRRLF 515


>gi|149922806|ref|ZP_01911230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica
           SIR-1]
 gi|149816349|gb|EDM75851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Plesiocystis pacifica
           SIR-1]
          Length = 455

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 119/443 (26%), Positives = 189/443 (42%), Gaps = 27/443 (6%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSS 128
           +V  + +S    +    ++TP LV+    + L + A+  +G   E  ++  +TGT+GK++
Sbjct: 2   VVDEAHFSAAVEADPDLAHTPRLVLRGLGEHLPVLAAAWHGWPGEALSLAGITGTNGKTT 61

Query: 129 VAS--FVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
            A          R G    ++G T             TTP P+ L   L+    +G    
Sbjct: 62  TAHLLGAIASHPRGGRPHLRLGTTGNWLVDREVHAGFTTPFPVELQALLAEAHDRGARCG 121

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SSH L Q R   ++  A + T+  +DH+D+H    AY  AK  L    L  +  A+
Sbjct: 122 VMEVSSHALAQGRAKPLRYRAVALTSFSQDHLDFHPDMAAYLEAKCELARRHLHVDGLAV 181

Query: 246 IYADD----------AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              +           A +  V +R   A     +       +  +          V ++ 
Sbjct: 182 APLEQGRASEAFLAAAEAAGVERRWRTARSAAGAGAKAQLRVEAQLPLQPGEGTAVRVAT 241

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSR 354
                D   PL G F + N +V   L + +      + + L      PGR E        
Sbjct: 242 PAGALDLRSPLVGAFNLDNLMVTVALALGLDFGLDTIADALRAATGAPGRLEAVALPGVA 301

Query: 355 GGRIYVDYAHTSNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           G  +YVDYAHT +++   L+ +   R    GR +VV GCGGDRD  KRP+MG++A   A 
Sbjct: 302 GPAVYVDYAHTPDAVARSLEALEHARRARGGRTVVVLGCGGDRDPSKRPLMGEVASRGAQ 361

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               T DNPR+EDP  I  ++I G           + + +R  AI +AI     +DV+++
Sbjct: 362 RFWATSDNPRTEDPASIVDQMIAGALGPDAGGAELVREVDRARAIASAIAEAAAEDVVLI 421

Query: 465 AGKGHETVHIVTNGEKKMSVDCD 487
           AGKGHE   ++    K    D +
Sbjct: 422 AGKGHEDYQVIGE-TKIHFDDRE 443


>gi|171742535|ref|ZP_02918342.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283456379|ref|YP_003360943.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278149|gb|EDT45810.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283103013|gb|ADB10119.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 521

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/520 (20%), Positives = 191/520 (36%), Gaps = 44/520 (8%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVG----NKED 55
           L++  L+ +        L    +      +  ++ D+R ++ G  +FV   G       D
Sbjct: 17  LKEHHLLREIVHGRRWTLDASDLPGANEPVGSITYDTRKVEPGSMLFV--KGRFKPEFLD 74

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G         +G  A V  + Y+ +  +         ++V++  K +SL ++  YG    
Sbjct: 75  GID------GKGLAAYVAETEYADRTKAIG-------IIVEDVHKAMSLLSAAFYGMPQN 121

Query: 116 -----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 I    G +  + +A  +         + F              ++LTTP  +  
Sbjct: 122 ELTVIGITGTKGKTTTAYLAHAILNEYSHGRCALFSSVNLCLDGHTMLASKLTTPESLDA 181

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFN 228
            + +   +  G+ ++ +E SS     +R+ G+    G+F N+  DHI    H T + YF 
Sbjct: 182 FRMMREAADNGMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYFR 241

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHNAGCRVLSVGYQGKFIHLKKVCAI 285
            K RL          A     D   ++      +         + G       + +V   
Sbjct: 242 CKRRLIANSRSLVLGADCNHRDLLMQDAADAGVKVTEFALHDAARGLTSPAQVIARVDPE 301

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +    +              + GEF V NA  A  + I  G+  +           VPGR
Sbjct: 302 NKAGFIVSVNGSDLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDPSIAAMCRVQVPGR 361

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIV--VFGCGGDRDQGKRPIM 402
            E V     G  +Y+D+AH   S++ ++   +RT    R  +  V G  G +   +R  +
Sbjct: 362 MERVKAGD-GLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGI 420

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNK 458
            K AL   +  I T D+P  EDP  I  ++   +            R  AI  AI    +
Sbjct: 421 VKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPRELAIEKAIADARE 480

Query: 459 Q----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                ++++V GKG ET +I+         D  ++R +LG
Sbjct: 481 HADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 520


>gi|46204010|ref|ZP_00050625.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 198

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/166 (51%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D A V   LE L  VPGR E +G    G    VDYAH   +LE +L  +R   SGR++VV
Sbjct: 30  DPAGVFAALESLTGVPGRMERIGEARGGLC-LVDYAHKPEALEHVLTALRPFASGRLVVV 88

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           FGCGG+RD GKRPIMG IA  LAD  IVTDDNPR+E+P  IRA I+   PG  E G+R +
Sbjct: 89  FGCGGNRDSGKRPIMGAIAARLADRVIVTDDNPRNEEPASIRAAILAAAPGAEEIGDRAQ 148

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           AIR  +  L   DVLVVAGKGHET  IV +       D D +R  +
Sbjct: 149 AIREGVRSLKAGDVLVVAGKGHETGQIVGD-RVLPFSDHDTVRAAI 193


>gi|306822448|ref|ZP_07455826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553993|gb|EFM41902.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 521

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 106/520 (20%), Positives = 190/520 (36%), Gaps = 44/520 (8%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVG----NKED 55
           L++  L+ +        L    +      +  ++ D+R ++ G  +FV   G       D
Sbjct: 17  LKEHHLLREIVHGRRWTLDASDLPGANEPVGSITYDTRKVEPGSMLFV--KGRFKPEFLD 74

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G         +G  A V  + Y+ +  +         ++V++  K +SL ++  YG    
Sbjct: 75  GID------GKGLAAYVAETEYADRTKAIG-------IIVEDVHKAMSLLSAAFYGMPQN 121

Query: 116 -----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 I    G +  + +A  +         + F              ++LTTP  +  
Sbjct: 122 ELTVIGITGTKGKTTTAYLAHAILNEYSHGRCALFSSVNLCLDGHTMLASKLTTPESLDA 181

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFN 228
            + +   +  G+ ++ +E SS     +R+ G+    G+F N+  DHI    H T + YF 
Sbjct: 182 FRMMREAADNGMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYFR 241

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMK---RAHNAGCRVLSVGYQGKFIHLKKVCAI 285
            K RL          A     D   ++      +         + G       + +V   
Sbjct: 242 CKRRLIANSRSLVLGADCDHRDLLMQDAADAGIKVTEFALHDAARGLTSPAQVIARVDPE 301

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +    +              + GEF V NA  A  + I  G+  +           VPGR
Sbjct: 302 NKAGFIVSVNGSDLRPMELDMSGEFNVTNAAAAVAIAIEAGVPESDPSIAAMCRVQVPGR 361

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIM 402
            E V     G  +Y+D+AH   S++ ++  +         RI +V G  G +   +R  +
Sbjct: 362 MERVKAGD-GLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSGTTGGKAVDRREGI 420

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAIRTAIEMLNK 458
            K AL   +  I T D+P  EDP  I  ++   +            R  AI  AI    +
Sbjct: 421 VKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPRELAIEKAIADARE 480

Query: 459 Q----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
                ++++V GKG ET +I+         D  ++R +LG
Sbjct: 481 HADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 520


>gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
 gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
          Length = 516

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 109/492 (22%), Positives = 194/492 (39%), Gaps = 43/492 (8%)

Query: 1   MKLQDLIYK-DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL+ L+   +  E+   L I      E++I ++  +S+++    IFVAI G K DGH++
Sbjct: 6   MKLKTLLEDLEILEIKGNLDI------EKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIY 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           I  A  QG  A +V     L         +   + V N+R  LS  +   YGK  E  +I
Sbjct: 60  IKSAKKQGCYACIVEDFVDL---------DVAQIKVKNSRAALSKVSHNYYGKPSEDLDI 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSY 176
           + +T T+GK++ +  +++I + +G     IG     I  F   + LTTP  + L K LS 
Sbjct: 111 IGITATNGKTTTSFMLKKIYEEAGSKVGIIGTVYVKIDDFMIPSYLTTPESLDLQKYLSI 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +    V +E SS  L+  R   +     SF+NL ++H++ H + +AY   K +L  E
Sbjct: 171 FRERKADKVIMEVSSAALELDRAKDVDYNIVSFSNLSKEHMEQHGSYEAYKREKSKLITE 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +   + + +    +   K         L    +   +    +     K    I+ +
Sbjct: 231 AKEHQIAVLNFDNPEIKELASKTKAKVFSFSLDDSLENFSMKNLDLSTGRGKFDFIINRD 290

Query: 297 G---------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                      +F       G   V N++VA  + +  GID   +   L     V  RFE
Sbjct: 291 IETKSGILKKGEFHVELNTAGFSSVMNSMVAISISLLDGIDIVTIQRALRIFRGVERRFE 350

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG---- 403
            +       +I  D+     ++++ L+ +  +    I  ++   G+R             
Sbjct: 351 IIFEK--DFKIIDDHFANEVNIDVTLETLCKMKYNDIKFLYAIRGNRGVELNEENALKII 408

Query: 404 ---------KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                    +I   L+   +   D    E+ +     +              EA+ T I+
Sbjct: 409 EWNNKLKLSEIYATLSRDTVTWKDEVSDEERDIFLKIMKENNIKVHLFDTLKEAVETVID 468

Query: 455 MLNKQDVLVVAG 466
           +  K DV++ AG
Sbjct: 469 IAQKDDVVMFAG 480


>gi|222825170|dbj|BAH22327.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Wolbachia endosymbiont of Cadra cautella]
          Length = 284

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 113/276 (40%), Positives = 163/276 (59%), Gaps = 9/276 (3%)

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +DYH++   YF AK RLF+E+LPKE  AI+ AD     E++  A   G +V++ G +   
Sbjct: 1   MDYHKSIDEYFEAKKRLFDEVLPKEKTAILNADIGEYGELLNIAEKRGNKVITYGKKNSD 60

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I L K     N Q +TI +  + ++  FP+ G+FQ YN L A G+ I+ G+D       +
Sbjct: 61  ITLLKQIPTANGQYLTIQIGDEIYNAFFPIFGQFQAYNLLCAIGIVISSGMDYQ--RMCI 118

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           +KL    GR E V         +VDYAHT ++L+  L +++   + +I++VFGCGG+RDQ
Sbjct: 119 DKLASPSGRMEKV-----NTFAFVDYAHTPSALKQALLSLKWHFNKKIVLVFGCGGNRDQ 173

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            KR  MGKIA  LA   IVTDDNPR EDP KIR +I+   P  +E G+R +AI   I + 
Sbjct: 174 TKRAEMGKIAQMLAGKVIVTDDNPRDEDPGKIRHDILLHCPDALEIGDRKKAIEKGINIA 233

Query: 457 -NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            ++  +L+VAGKGHE   I+  G+     D ++IRE
Sbjct: 234 HDENMILLVAGKGHERFQIIE-GQSLEFSDVEVIRE 268


>gi|307084812|ref|ZP_07493925.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365619|gb|EFP54470.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 250

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 99/193 (51%), Gaps = 10/193 (5%)

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    
Sbjct: 48  HHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLAL 105

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDN
Sbjct: 106 VDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDN 164

Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET  
Sbjct: 165 PRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ 224

Query: 474 IVTNGEKKMSVDC 486
               G  +   D 
Sbjct: 225 -RGGGRVRPFDDR 236


>gi|217963816|ref|YP_002349494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333086|gb|ACK38880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 196

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/195 (38%), Positives = 104/195 (53%), Gaps = 5/195 (2%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G F VYN L A     A+ I     +  LE +  V GRFE V    +   + VDYAHT
Sbjct: 1   MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELV-NAGQAFPVIVDYAHT 59

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L  +L+ I      R+ VV GCGGDRD+GKRP M KIA+D +   I T DNPRSE+P
Sbjct: 60  PDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMAKIAVDYSSNPIFTSDNPRSENP 119

Query: 426 EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKM 482
             I  ++I G+P    ++   NR +AIR A+      DV+++AGKGHE   ++ + E   
Sbjct: 120 HAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD-EVID 178

Query: 483 SVDCDIIREILGLIL 497
             D    R  +   L
Sbjct: 179 FDDRVEARIAIEKKL 193


>gi|260201273|ref|ZP_05768764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 256

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 99/193 (51%), Gaps = 10/193 (5%)

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    
Sbjct: 54  HHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLAL 111

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDN
Sbjct: 112 VDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDN 170

Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET  
Sbjct: 171 PRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ 230

Query: 474 IVTNGEKKMSVDC 486
               G  +   D 
Sbjct: 231 -RGGGRVRPFDDR 242


>gi|213423828|ref|ZP_03356808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 141

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/141 (43%), Positives = 83/141 (58%), Gaps = 4/141 (2%)

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            VDYAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDD
Sbjct: 1   MVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDD 60

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           NPR+E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE   IV
Sbjct: 61  NPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIV 120

Query: 476 TNGEKKMSVDCDIIREILGLI 496
                    D      +LG+I
Sbjct: 121 GTQRLDY-SDRVTAARLLGVI 140


>gi|289443663|ref|ZP_06433407.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
 gi|289416582|gb|EFD13822.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 247

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 99/193 (51%), Gaps = 10/193 (5%)

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG + V N LVA  +   +G+     +  L ++ V PGR E +     G    
Sbjct: 45  HHIGIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRV-PGRLEQIDRGQ-GFLAL 102

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           VDYAH   +L  +L  +      R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDN
Sbjct: 103 VDYAHKPEALRSVLTTL-AHPDRRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDN 161

Query: 420 PRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           PR EDP  IR EI+ G          +E  +R +AIR A+      DV+++AGKGHET  
Sbjct: 162 PRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ 221

Query: 474 IVTNGEKKMSVDC 486
               G  +   D 
Sbjct: 222 -RGGGRVRPFDDR 233


>gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 535

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/544 (18%), Positives = 199/544 (36%), Gaps = 62/544 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL+     +  +  +   ++  +  I +++  S+ + A  +FV I G++ DGH + 
Sbjct: 1   MKLTDLLKSVKID-SSCHNQLKIELDKIDIKKIAYHSKEVGADTLFVCIKGHQTDGHNYA 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A +QGA  I+V                   L V ++R+ L++ +S  +    +  NI 
Sbjct: 60  KHAASQGATVIIVEDFIEDIH--------VIQLKVSDSREALAILSSNFFDHPSKSMNIF 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYL 177
            VT T+GK+++   +++I + S L S  IG          +  RLTTP    L +  + +
Sbjct: 112 GVTATNGKTTITYMIEEIFKASQLKSGLIGTILVKIDKEIEMSRLTTPESYDLQQHFARM 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + +THVS+E SS  L+  R+        +F N+  +HI  H++  AYF+AK  L    
Sbjct: 172 RDREITHVSMEVSSSALELKRVYNTDFDVVAFMNISPEHIKLHESFDAYFDAKASLIRNA 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--- 294
               +  +    D      +++   A      +  +   I +  +         T++   
Sbjct: 232 SKASTAIL--NLDEPLLIPLEKETEAQVITFGIENKSGTITVSDIRFSSGIPSFTVNIRK 289

Query: 295 ---------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                    +E   FD    + G   +YNAL A    +   +    +   ++    V  R
Sbjct: 290 PFNTLSGKTIEITSFDLEMSVLGYHSIYNALTALVTGLVNDLPIEDIQRGIKNFQGVERR 349

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           F+ +        +  D     N+++  ++ I  +    + +V    G         + + 
Sbjct: 350 FQVLYDKEFK--VIDDLLLNQNNIDSCMETISHLDYNELHLVHAIRGSNGPAHSTEIAES 407

Query: 406 ALDLAD-----IAIVTD--------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                        I+T         D    E+ +     +              + +   
Sbjct: 408 LTKWFHKMKIAKIILTTAPSHVNKIDEVTEEELDAFLKVMHQNKIEVTFFKELDDTLLFG 467

Query: 453 IEMLNKQDVLVVAG---------------KG------HETVHIVTNGEKKMSVDCDIIRE 491
           +E LN  D+L+++G               K       HE +  V   +        +  +
Sbjct: 468 VEQLNVADILLISGAHSMDQGARKTLELLKEIYPQVDHEKIDQVLKNKIIGMDPFKVAEK 527

Query: 492 ILGL 495
           +L L
Sbjct: 528 LLNL 531


>gi|291533200|emb|CBL06313.1| UDP-N-acetylmuramyl-tripeptide synthetases [Megamonas hypermegale
           ART12/1]
          Length = 340

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 114/327 (34%), Positives = 162/327 (49%), Gaps = 6/327 (1%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKA 173
             ++ VTGT+GK+S    ++ I +++G     IG    +          TTP  I L + 
Sbjct: 1   MRMIGVTGTNGKTSSTYMLRDILRKAGYKVGVIGTIKIMIEDEEMPIHNTTPDVIDLQEI 60

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           L  +  Q + +V +E SSH LD +R+ G +     FTNL +DH+DYH+T + Y  AK +L
Sbjct: 61  LDKMYKQNIDYVVMEVSSHALDMNRIAGCEYDTAMFTNLTQDHLDYHKTMENYALAKAKL 120

Query: 234 FE----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           F+      L K +   +   D          H     +         +  + V    +  
Sbjct: 121 FDSLSAPNLVKSNKNAVINLDDEFGSKTMIEHTKCNLITYGIKNDAVLKAENVEIKASGA 180

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +  +     F   + G F VYN L   G+ +A  I   ++ E LE    V GRFE V
Sbjct: 181 SFDVKYKDDCVHFDLKVTGMFNVYNILGVIGVALAEKISFDIIKETLEAFEAVAGRFELV 240

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   + VDYAHT + LE +LK  R I   R+IVVFGCGGDRD+ KRPIMG+IA  L
Sbjct: 241 RQGQ-DFSVIVDYAHTPDGLENVLKTAREIAKKRLIVVFGCGGDRDRTKRPIMGRIAAQL 299

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           AD+ I T DNPR+EDPE I +E+  G+
Sbjct: 300 ADVVIATSDNPRTEDPEFILSEVEAGV 326


>gi|213581231|ref|ZP_03363057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 138

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 60/138 (43%), Positives = 81/138 (58%), Gaps = 4/138 (2%)

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAHT ++LE  L+  R   +G++  VFGCGGDRD+GKRP+MG IA + ADI +VTDDNPR
Sbjct: 1   YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADIVVVTDDNPR 60

Query: 422 SEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           +E+P  I  +I+ G+           R EA+  AI      DV+++AGKGHE   IV   
Sbjct: 61  TEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKGHEDYQIVGTQ 120

Query: 479 EKKMSVDCDIIREILGLI 496
                 D      +LG+I
Sbjct: 121 RLDY-SDRVTAARLLGVI 137


>gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 511

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 180/491 (36%), Gaps = 41/491 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ ++     E+++  +       +  I ++  +S+ I    +FVAI G   DGH +I
Sbjct: 1   MNLRKILKN--IEILDTKNFIDF---DVDIKKICYNSKFITESSLFVAIKGYITDGHKYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--IL 118
            QA  +GA   +V      +          P L V+NTR  L+  +   Y    +   I+
Sbjct: 56  LQAYEKGAVCAIVEDFIDCE---------IPQLKVENTRIELANVSKNFYDDPSQKLNIV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYL 177
            +T T+GK++ +  + +I   +G  +  IG      S     + LTTP  + L      +
Sbjct: 107 GITATNGKTTTSFMLDKIYNDAGYRTGIIGTVYTKYSDITIPSVLTTPESLELQSFFRDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + +  V++E SS   + +R+  I     +F N  R+HID H + + Y+ AK +L +E 
Sbjct: 167 LKKKIEKVTMEVSSSSEELYRVKNIDFNIVAFNNFSREHIDQHGSFEKYYEAKSKLVKEA 226

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +    D     + +         L        I    +     K    ++   
Sbjct: 227 SKNAVAILNMDFDHIKDLLTQTKARVITYSLENNDYDFSISELDLSTGFGKYIFNVNRNI 286

Query: 298 ---------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                    + F+    + G   V N++ A  + +   ID  ++ + +     V  RFE 
Sbjct: 287 DFNDFVLKKQSFEINLSVAGYSSVMNSVAAIIISLVQNIDVDIIKKSISAFSGVERRFE- 345

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   +I  D+     ++++ L+ +  +      +++   G+R         +    
Sbjct: 346 -MIYDEKFKIIDDHYANVKNIDVTLETLSKMKYKNFRMLYAIRGNRGVNLNRETAEETAK 404

Query: 409 L-----ADIAIVT--------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                 A     T         D    E+ E     +           N   ++   ++ 
Sbjct: 405 WLKKLDAKTFYATLSKDTVSKKDEVSKEELEIFLNIMEKYNINVKVFDNLENSVYEILKT 464

Query: 456 LNKQDVLVVAG 466
            +K DV++ AG
Sbjct: 465 ADKGDVVLFAG 475


>gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-208]
          Length = 339

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 146/338 (43%), Gaps = 24/338 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 4   MKLNEL--------MQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+  +          +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 56  ASRAVELGAVAIIAEN---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 107 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRL 233
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T   Y NAK      
Sbjct: 167 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQ 226

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                   +P +   +   ++ V  +   A   +     Q        +    +     +
Sbjct: 227 LGNSYHTSNPKMAVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDL 286

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +    ++     + G F VYN L A     A+ I    
Sbjct: 287 ATPVGEYTVKIKMIGNFSVYNVLAAIATSFALHIPIEK 324


>gi|291457655|ref|ZP_06597045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380708|gb|EFE88226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
          Length = 515

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 103/511 (20%), Positives = 184/511 (36%), Gaps = 30/511 (5%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
             L+ +         +   +   +     ++ D+R +  G + +   G +     ++   
Sbjct: 15  HHLLREIIQGDCWTDNAADLAGADEPFTAITYDTRKVTPGTL-LCCKG-RFK-ADYLTDI 71

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G  A +  + YS    +       P L+V++ RK +SL ++  YG+  + +  +  T
Sbjct: 72  DQAGLAAYMAETEYSAVTRA-------PGLIVNDARKAMSLLSAEFYGRPQDELTVIGIT 124

Query: 124 SGKSSVASFVQQICQRS---GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLS 178
             K    +        +   G  +                ++ LTTP  +   + +   +
Sbjct: 125 GTKGKTTTAYFVQAVLNAYSGGRAALFSSVDNCLDGHTYAESDLTTPESMDAFRMMREAA 184

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFEE 236
           + G+ ++ +E SS      R+ G+   AG+F N+  DHI    H T + Y   K ++   
Sbjct: 185 NNGMRYLVMEVSSQAYKVERVYGLTFDAGAFLNISPDHISAIEHPTFEDYLYCKRQITHN 244

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  A     D   ++            L                  +   +     
Sbjct: 245 CRTLVLGADCDHADLIRQDAQASNVPVTTFALHAADGHGTHADFVALPDASSGYLFQEQG 304

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               DF   L GEF   NA  A  L  A+G+ +        +   +PGR E     S   
Sbjct: 305 KAIGDFSLELEGEFNAANAAAAIALSRAVGVPAGSEAFRALEHVHIPGRME--HYESGNM 362

Query: 357 RIYVDYAHTSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             YVDYAH   S +     + +     + R++VV G  GD+   +R  + K A D AD  
Sbjct: 363 VAYVDYAHNYVSTKTLAEFVTHKYADRNPRVVVVTGSVGDKAVDRREGIIKGAQDYADRI 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQ-D---VLVVA 465
           I+T ++   E    I  E+   I           +R +AI  A+E  +   D   +L+V 
Sbjct: 423 ILTAEDTVHERMIDILHEMQGYITNPRVVSDIELDRAKAIEKAVEDAHAHADRLTILLVI 482

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GKG E    V         D  +++ + GL+
Sbjct: 483 GKGEERWIKVDGKHAPYEGDDHVVKRLFGLL 513


>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
 gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
          Length = 455

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 97/459 (21%), Positives = 181/459 (39%), Gaps = 43/459 (9%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                   +  +  V +DSR ++AG +FVA+ G+K DGH FI +A  +GA   +V     
Sbjct: 15  GRLAAGDPQGTVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGAAGAIVE---- 70

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             +F A +     +++V NT + L    +         ++ +TG++GK+S       +  
Sbjct: 71  --EFPAELPPGFGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTSTKDLTASVLG 128

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            +   +   G  +                 I + +     + +     ++ A   G+   
Sbjct: 129 ENFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMAAPEVGI--- 185

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN+G  HI++  +++A    K  L  E LP     I+ A+D +S  + 
Sbjct: 186 -----------ITNIGMAHIEFLGSREAIAQEKGML-AEALPPSGTLILSAEDEFSPAIA 233

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            R       V+  G     +    +    +  + TI+ EG+       +PGE  V NA++
Sbjct: 234 AR---TKADVVLAGINKGEVFASDLRPSASGTKFTINAEGRTAAAELSVPGEHMVRNAML 290

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNI 376
           A     A G+        L KL +  GR E       G ++  D Y    +S+   L+ +
Sbjct: 291 AVAAGRAFGLSLEECAAGLSKLRLTKGRLEQKMIR--GIQVIDDTYNANPDSVAAALRTL 348

Query: 377 RTIT-SGRIIVVFGCGG----DRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRA 430
            ++   GR I V G  G    + ++G R ++G++A     D  I        E+ + I  
Sbjct: 349 ASMPAVGRRIAVLGRMGELGVEAERGHR-LVGEVAAQTHVDSVI-----GVGEEAQWITE 402

Query: 431 EI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                G+   +   +  EA +   ++    D++++  KG
Sbjct: 403 AAWRGGVEKVVRVESTEEATKVLRDLAKAGDLVLI--KG 439


>gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 256

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 121/245 (49%), Positives = 156/245 (63%), Gaps = 13/245 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+DL    FPEL  QL   P    +  I+ +SSDSRH+  G  FVA+ G K DG  FI
Sbjct: 21  MKLRDLAGDQFPELEAQLEG-PAGLLD--ISGLSSDSRHVAPGNAFVAVAGTKADGAGFI 77

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   + S              + P+L V   R+FLS+ A+R YG+ PE ++AV
Sbjct: 78  VDAAGRGAAVAIASQPVDA---------SIPVLAVKEPRRFLSIAAARFYGRQPETMVAV 128

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSS 179
           TGT+GK+SVASF +QI   +G ++  IG T  +S    +   LTTP P+ L K L+ L+ 
Sbjct: 129 TGTAGKTSVASFTRQIWAHAGHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAD 188

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +GVTH S+EASSHGLDQ RLDG+KL A +FTNLGRDH+DYH T +AY  AKMRLF+ LLP
Sbjct: 189 EGVTHASMEASSHGLDQSRLDGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDRLLP 248

Query: 240 KESPA 244
           K +PA
Sbjct: 249 KGAPA 253


>gi|308234230|ref|ZP_07664967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|328943512|ref|ZP_08240977.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|327491481|gb|EGF23255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
          Length = 580

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 109/526 (20%), Positives = 195/526 (37%), Gaps = 64/526 (12%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +       +  IN + S+S + Q   IFV   G       ++  A+ +GA A +  + ++
Sbjct: 49  NNKITAAADSLINGLDSNSLYSQKHHIFVC-KGAAFKP-EYLQDALKKGATAYMCDNTHA 106

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI-- 136
                 T   +   +VV+N R  ++  A   +G     ++ V  T  K    +       
Sbjct: 107 QA--LRTYCPHAVQIVVNNIRLAMAQAAPLAWGHPDTRLITVGITGTKGKTTTACMIKSI 164

Query: 137 -----CQRSGLSSFQIGPTSTISSF-------AQDNRLTTPSPIYLAKALSYLSSQGVTH 184
                 ++   +S    P   + S         +++  TTP      + L   +  G+TH
Sbjct: 165 LDARAQRKHICTSQGKSPIGLMGSITTYDGILNEESTNTTPEAPDFWRHLHNAAESGITH 224

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E SS  L  HR+DG+ L    F N+  DHI      +        L + ++   + A
Sbjct: 225 MVMEISSQALKHHRVDGLHLDVALFLNISPDHISK---VEHPTFEDYFLSKLMIFSMANA 281

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI------------------- 285
            +   DA   E +    +A   +L  G       L+                        
Sbjct: 282 AVMNLDADHFEAIYAHAHACSPLLVCGRVHAQRRLEAYETQFLSDKKVASTLKAALNRTL 341

Query: 286 ----------------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                                   +   +  DF  PL G F V NAL A      + +++
Sbjct: 342 PADIAAHDIRPQGCGLQFSCDEAHNANAQQRDFFVPLHGTFNVDNALCAVACADLLHVNT 401

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388
           + + + L     V GR EF+ T+++  +  VDYAH   S      ++       +II +F
Sbjct: 402 SDIQQGLAN-THVAGRMEFIPTHTQNIQGIVDYAHNKLSFRCFFSDLAHEFPHYKIIALF 460

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNR 445
           G  G +   +R  + + A   AD  ++T+++P  E  + I  E+   +P    +  + NR
Sbjct: 461 GAPGGKAFDRRRDLVEEAAKWADTIMLTEEDPGHERVQDICNEMAKHMPKGQKYYIECNR 520

Query: 446 IEAIRTAIEML---NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDI 488
             AI  A+E+      + ++ + GKG ET     +       D DI
Sbjct: 521 AAAIEKAVELANCSQAKTLICMLGKGDETTQHEQDRYVSCLPDKDI 566


>gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 513

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 104/475 (21%), Positives = 190/475 (40%), Gaps = 37/475 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            E         M     ++  V+SDSR ++ G++FVAI G + DG+ +I +AI +GA  I
Sbjct: 9   IETAKAQGDEKMNIDGVEVQGVTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGAVII 68

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSV 129
                               I +  N RK L+   +  Y    E I  + +TGT+GK++ 
Sbjct: 69  YTEHRI--------TALGVMIKICSNARKTLADLCNAFYDHPSEKIRVIGITGTNGKTTT 120

Query: 130 ASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  +    + SG+S   IG     I++      LTTPS   +   L+ +  Q V  V +E
Sbjct: 121 SHIIYHALKESGVSVGLIGTLDIKINNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVME 180

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL   R+ GIK      TN+ RDH++YH+    Y  +K +LF+  L     A++  
Sbjct: 181 VSSHGLKSERVHGIKFDIAIHTNIERDHLNYHKNMGDYIRSKKKLFDC-LSPGKVALLNL 239

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---------- 298
           DD +S E++   +        +  +           ++      +               
Sbjct: 240 DDNHSLELLTGNNGLIVVTYGLNVRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPF 299

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           ++ F   L G+  +YN+L A   C+ + +    + ++++    V  R E +     G  +
Sbjct: 300 EYPFSINLLGKHNIYNSLAAITCCLLLDLSCEEIAKNIKSFTGVTRRLEVIYKK--GYTV 357

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-----A 413
             D++H   S   + ++++ +    + V+    G R          +     ++      
Sbjct: 358 IDDFSHNPASYGAVFESMQNLEYKNLHVINAIRGSRGADINQENADVLKIWYELLGMKTL 417

Query: 414 IVTD--------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           ++T         D  + E+       +  G   F    +  +AI T I  + + D
Sbjct: 418 MITSSKDKTGKLDEVQVEEIGAFFKVLSEGSVNFEYVDHLSDAIETIIPRIEEGD 472


>gi|212696049|ref|ZP_03304177.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676958|gb|EEB36565.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 371

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 101/383 (26%), Positives = 161/383 (42%), Gaps = 19/383 (4%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALS 175
           ++ VTGT+GK++ A+ +  +  + G     IG       +       TTP    L + L 
Sbjct: 1   MIGVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILI 60

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + + +  +E SSHGL   R  GI    G FTNL  +H+D+H+T   YF AK     
Sbjct: 61  EAKKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAK----- 115

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +L   S   +   D    +  K        +            K +  +    + T++ 
Sbjct: 116 MILLNNSKKQVVNLDDDYGKRAKEIFKDALTISINEDSKY--RAKNIKRVDLGLEFTVNG 173

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F     G + +YN+L A  +   +G     + + LE    V  RFEF+  N  G
Sbjct: 174 ----VKFHLNRFGHYDIYNSLCAIAIANDLGYKLEEISKALENFIGVKSRFEFI-ENKLG 228

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I VD+AHT  + E + K++      +I  V+G  GDR    R  +GKI+      +++
Sbjct: 229 INIVVDFAHTPEAFENLFKDLPK--DKKIYAVYGINGDRTYDIRKAVGKISAKYGVFSVI 286

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           T D+P+ +  E I  +I  G+       I   +R EAI+  I    K D + + GKG E 
Sbjct: 287 TTDDPKFDTFENISQQIKEGVDENKGESIIIKDRKEAIKYGISHAKKGDFVFMLGKGEEK 346

Query: 472 VHIVTNGEKKMSVDCDIIREILG 494
                   K    + + IRE+L 
Sbjct: 347 FLKFNANIKTYYNEKETIREVLE 369


>gi|330973393|gb|EGH73459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 170

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 5/154 (3%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + +G  +    + VDYAHT ++LE +L+ +R    GR++ +FGCGGDRD+GKRP+M  
Sbjct: 13  RMQRLG-GADKPLVVVDYAHTPDALEKVLEALRPHAKGRLLCLFGCGGDRDRGKRPLMAG 71

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           +   LAD   VTDDNPRSE P  I  +I  G            R +AI   I   +  DV
Sbjct: 72  VVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIASASADDV 131

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           +V+AGKGHE    + NG+++   D       L +
Sbjct: 132 VVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 164


>gi|289524488|ref|ZP_06441342.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502272|gb|EFD23436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 201

 Score =  166 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 8/193 (4%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL GE+ V NAL A+ +  ++  D+ ++ + LE    VPGR E       G    +DYAH
Sbjct: 1   PLLGEYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFVED-GPVCIIDYAH 59

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           T ++LE +L  ++ + +GR+ +VFG GG+R +  RPI+G IA   AD  +VT DNPRSED
Sbjct: 60  TPDALEKVLSTVKPLCNGRLWLVFGHGGERFKENRPILGSIAARFADRIVVTMDNPRSED 119

Query: 425 PEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
           P  I  +I  GI        +    +R EA+  A++   K DV++V GKG E   I+   
Sbjct: 120 PRDIATQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTGKGPER-QIIFKD 178

Query: 479 EKKMSVDCDIIRE 491
                 D + ++E
Sbjct: 179 RTIPYNDFEALKE 191


>gi|119026103|ref|YP_909948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765687|dbj|BAF39866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 517

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/510 (17%), Positives = 176/510 (34%), Gaps = 30/510 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ +     +  L    ++  +   + ++ D+R ++ G  F+   G +     ++     
Sbjct: 17  LLREIIRGDVWTLDPHDIKGFDEPFSAITYDTRKVEPGT-FLCCKG-RFK-AEYLQGIDE 73

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G  A V  + +S         +  P L+VD+ RK ++L ++  YG+  + +  V  T  
Sbjct: 74  RGLAAYVSENDFSD-------ATQAPGLIVDDVRKAMALLSAEFYGRPQDQLKVVGITGT 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K    +        +G S  +    S+           ++ LTTP  +   + +      
Sbjct: 127 KGKTTTAYLTQAMLNGCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDN 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELL 238
           G+ ++ +E SS      R+ G+     +F N+  DH     H T + Y + K ++ +   
Sbjct: 187 GMEYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNCR 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A     D   ++    +       L        +             V       
Sbjct: 247 ALVLGADCARADLIRQDARHTSVPVTTFALGGDSMADVMAAPANDDHSRFSIVIDGTSIG 306

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGG 356
           +          +    A VA          SA   + L ++  V   GR E         
Sbjct: 307 ELSLTLDGDFNYANAAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNT 366

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              VDYAH   S+  +L  +          I ++ G  G++   +R  +   A D  D  
Sbjct: 367 IAIVDYAHNYASVTALLDYVDQRYGSEKPEITLITGSAGNKAYDRRAEIVHAAQDRIDHL 426

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ----DVLVVA 465
           ++T ++   E  E++ A++   +           +R EA+ T +    K      ++++ 
Sbjct: 427 VLTFEDTDDEPVEQVCADMNDSVTNPQLDVKTILDRAEAVETTVSRDRKDPEHLHIILII 486

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           GKG+E              D  I+  +  L
Sbjct: 487 GKGNERWFKDHGKHIPYEGDDRIVERVFRL 516


>gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
 gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
          Length = 463

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 174/483 (36%), Gaps = 46/483 (9%)

Query: 1   MKLQDLIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK++++I +   ++ + +       ++ +  +  VS+D+R IQ G ++V + G K +GH 
Sbjct: 1   MKVKEMITRTLRDIQSMVDGRGLANEFFDITVYGVSTDTRTIQQGNLYVPLKGAKFNGHA 60

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+  AI +GA A++        +   T   + P+++VD+T + L   A R   +    ++
Sbjct: 61  FVQDAIDKGASAVLW------AETEGTPPKDVPVIIVDDTLRALQRLAHRYRKQLSVKVI 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK++    +  +   +       G  +               P+ L        
Sbjct: 115 GITGSNGKTTTKDMIAALLATTYKVQKTEGNLNNH----------IGVPLTLL---RLEE 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +  V +  S+ G  +   +  +  A   TN+G  H+    +++    AK+ +   L 
Sbjct: 162 DTEMAVVEMGMSNFGEIELLSNIAEPDAAVITNIGESHLQELGSREGIAQAKLEILSGLK 221

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                      D                VL  G      +  K   +          +  
Sbjct: 222 KNGLFVYH--GDEPLLVNRVPDLPLPEHVLRFGQGSDNDYYPKAVHVQANGTTFTVHQAP 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G+  VYNAL A  +     +    + E   +L V   R E + T      I
Sbjct: 280 NRSFFLPILGKHHVYNALAAIAVARFFHVSWEKIQEAFSQLQVTRMRMELIETKKGWTII 339

Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIA 413
              Y     S++  L+ +  +T   + I V G     GD++      +G +   ++ D  
Sbjct: 340 NDAYNANPTSMKAALQLLHELTGYEKKIAVLGDMLELGDQEVEFHREIGAMLRPEMVDYV 399

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-------KQDVLVV-A 465
                         +   I      F     R++A      +           DV+++ A
Sbjct: 400 F---------TYGALARHIALAAQPFF-PDGRVKAYEDKQSLAKDLLAVVSSGDVILLKA 449

Query: 466 GKG 468
            +G
Sbjct: 450 SRG 452


>gi|111018278|ref|YP_701250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817808|gb|ABG93092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 502

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 104/331 (31%), Positives = 144/331 (43%), Gaps = 10/331 (3%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           + L + L+  +   +  V++E SSHGL  HR+DG     G FTNL RDH+D+H    AYF
Sbjct: 171 VELQQTLAAFAEHRIGAVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYF 230

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK RLFE        A     D      +           S        H   V A   
Sbjct: 231 AAKARLFEP---GRCAAAAVGVDDEFGRRLAATVTVPRVTFSSRTTAADFHASAVHADEG 287

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+   G        L G  QV NAL A       G+D    +  +E    VPGR E
Sbjct: 288 GTSFTLHGAGARKPVRLRLLGVHQVDNALAAIAAIAVRGVDLDSAVAGIESPDTVPGRLE 347

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V         +VDY H       +   +R++T GR+I V G  G+RD GKR  +G  A 
Sbjct: 348 AVDAGQ-PFLAFVDYMHNPAGQRRLFPYLRSLTRGRVIAVVGATGERDPGKRVPLGATAA 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVL 462
             AD  IVTD++P S+D +++R ++  G         +   +R EAI  A+ +    DV+
Sbjct: 407 RFADTVIVTDESPCSDDAQRLREDVARGARSGGDAEVLVVPDRAEAIVAAVTLAAPGDVV 466

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VVAG+GH+ V       +    D   + E L
Sbjct: 467 VVAGRGHDRVQAYGPRRRV-FDDRIALHEAL 496


>gi|225377873|ref|ZP_03755094.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM
           16841]
 gi|225210311|gb|EEG92665.1| hypothetical protein ROSEINA2194_03532 [Roseburia inulinivorans DSM
           16841]
          Length = 195

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 11/160 (6%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR +   T   G    +DYAH   SL  +L+ +R     R+IV+FGCGG+R   +R  M
Sbjct: 29  PGRCQ-NMTAGTGYVFLIDYAHNEMSLRNLLETLRKFKPARLIVIFGCGGNRSVLRRYQM 87

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---------PGFIEKGNRIEAIRTAI 453
           G+ A  LAD  I+T DNPR EDPE+I  +I  G+         P +I+  +R  A+  A+
Sbjct: 88  GETAGRLADFTIITSDNPRWEDPERIMNQIEDGLRGAVCAGEKPSYIKISDRRAAVEYAV 147

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            M  K+D++V+AGKGHE+   +  G +    D  I++E L
Sbjct: 148 SMAEKRDIIVLAGKGHESYQEIK-GIRYPLDDRKIVQEAL 186


>gi|154488876|ref|ZP_02029725.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
 gi|154083013|gb|EDN82058.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
          Length = 517

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/510 (17%), Positives = 176/510 (34%), Gaps = 30/510 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ +     +  L    ++  +   + ++ D+R ++ G  F+   G +     ++     
Sbjct: 17  LLREIIRGDVWTLDPHDIKGFDEPFSAITYDTRKVEPGT-FLCCKG-RFK-AEYLQGIDE 73

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G  A V  + +S         +  P L+VD+ RK ++L ++  YG+  + +  V  T  
Sbjct: 74  RGLAAYVSENDFSD-------ATQAPGLIVDDVRKAMALLSAEFYGRPQDQLKVVGITGT 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K    +        +G S  +    S+           ++ LTTP  +   + +      
Sbjct: 127 KGKTTTAYLTQAMLNGCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDN 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELL 238
           G+ ++ +E SS      R+ G+     +F N+  DH     H T + Y + K ++ +   
Sbjct: 187 GMEYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNCR 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A     D   ++    +       L        +             V       
Sbjct: 247 ALVLGADCARADLIRQDARHASVPVTTFALGGDSTADVMAAPANDDHSRFSIVIDGASIG 306

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGG 356
           +          +    A VA          SA   + L ++  V   GR E         
Sbjct: 307 ELSLTLDGDFNYANTAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNT 366

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              VDYAH   S+  +L  +          I ++ G  G++   +R  +   A D  D  
Sbjct: 367 IAIVDYAHNYASVTALLDYVDQRYGSEKPEITLITGSAGNKAYDRRAEIVHAAQDRIDHL 426

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQ----DVLVVA 465
           ++T ++   E  E++ A++   +           +R EA+ T +    K      ++++ 
Sbjct: 427 VLTFEDTDDEPVEQVCADMNDSVTNPQLDVKTILDRAEAVETTVSRDRKDPEHLHIILII 486

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           GKG+E              D  I+  +  L
Sbjct: 487 GKGNERWFKDHGKHIPYEGDDRIVERVFRL 516


>gi|58700141|ref|ZP_00374655.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533343|gb|EAL57828.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 213

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/204 (39%), Positives = 118/204 (57%), Gaps = 12/204 (5%)

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q +T+ ++ + ++  FP+ G+FQ YN L A G+      +       +EKL   PGR E 
Sbjct: 16  QHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVEKLVSPPGRMEK 70

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V         +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ KR  MGKIA  
Sbjct: 71  VKP-----FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQTKRSEMGKIAQM 125

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGK 467
            AD  I+TDDN R EDP KIR +I+   P  +E G R EAI   +++  N+  +L+VAGK
Sbjct: 126 YADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLVAGK 185

Query: 468 GHETVHIVTNGEKKMSVDCDIIRE 491
           G+E   I+ N       D ++I+ 
Sbjct: 186 GNEKFQIIGNQT-FEFSDVEVIKN 208


>gi|310287126|ref|YP_003938384.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
 gi|309251062|gb|ADO52810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
          Length = 543

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/512 (17%), Positives = 176/512 (34%), Gaps = 34/512 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ +        L    ++  +   + ++ D+R ++ G + +   G +     ++     
Sbjct: 41  LLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDIDE 97

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G  A V  + +S +       +  P L+V++ RK +SL ++  YG+  + +  V  T  
Sbjct: 98  RGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGT 150

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K    +        +  S  +    S+           ++ LTTP  +   + +   +  
Sbjct: 151 KGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 210

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELL 238
           G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K ++     
Sbjct: 211 GMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVRNSH 270

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--- 295
                A     D   ++            L  G          V A     + +      
Sbjct: 271 ALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYRIAA 330

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +  +F         +    A +A      I + +     H  +   + GR E     
Sbjct: 331 DGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDP 390

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  VDYAH   S+  +L  +         RI +V G  G++   +R  + + A   
Sbjct: 391 QSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHR 450

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----EMLNKQDV 461
            D  I T ++  +E    I  E+   I           +R  A+  AI       ++ ++
Sbjct: 451 IDSFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARAHADRFNI 510

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG E      N       D  I+  + 
Sbjct: 511 ILIIGKGDERWIKEHNKHVPFEGDDRIVERMF 542


>gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 463

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/469 (17%), Positives = 164/469 (34%), Gaps = 34/469 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+D+      ++++  ++      ER++ ++++DSR ++ G +F+AI G + DGH +I
Sbjct: 1   MKLRDIKEGTNGKILSGSTL----DLEREVGDITTDSRLVKKGDVFIAIKGERVDGHDYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+++GA+A+V+S        S  I  +   L VD+T   L   A+    K P   + +
Sbjct: 57  QDAVSRGAQALVLSR-----TPSIQIPESVLALEVDDTVLALGKLAAYWRNKMPAKTIGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S       I  R  ++       +                      L      
Sbjct: 112 TGSVGKTSTKEVTASILSRKFVTLRSQKSYNN-------------EIGLPLTLLGLTPEV 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  +    +   L  I         +                         LP 
Sbjct: 159 EVAVLEMGGAYRMGEIEYLCSIAKPFIGVVIVVGYAHIGRMGSLERIAENKSELVRSLPS 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E  AI+   D +  + M     A      +  +        V    N  +  + +  + +
Sbjct: 219 EGFAIL-NRDDHRVKAMADVTKAHVVWYGLDEESYIRATDVVSEGLNGIRFVLHIGDRSY 277

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G   V+  L +  +   +G++   ++  +++L     R       +    +  
Sbjct: 278 QVKAPLLGRHSVHTILASVAVAHVMGMEDQEIVHAIKELPPG-LRLIVNKGINGSTILDD 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            Y     S+   L  +  I   RI V+      G   +     +G  A ++ D       
Sbjct: 337 TYNANPTSMLAALNLLNDIEGHRIAVLGDMAELGHFTEEGHLKVGARAAEVCDKLYTV-- 394

Query: 419 NPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  + I    +  G+     +   +  EAI      L++ DV++V
Sbjct: 395 ---GELAQIIARGALQAGMNPGDVVTLKDYQEAIDVLKRDLHEGDVVLV 440


>gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 492

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 118/457 (25%), Positives = 189/457 (41%), Gaps = 32/457 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S  S  I+ GW+FVAI G   DG+ +  +A+  GA+A+V  +   L   +       P
Sbjct: 13  GISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVVTDAPDRLPPLA------IP 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + VV + R+ L+  A+  Y       N++ VTG++GK++VA  ++ I + +G     IG 
Sbjct: 67  VAVVPDARQALAALAAHFYNHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGT 126

Query: 150 TSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                   +  +RLTTP    L + L+ +   GVTH ++E S+ G++  R+D +    G 
Sbjct: 127 VRVNVGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGVEMSRVDHVTFSCGI 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D+H T   Y  AK R    L P         DD + + +   A      V 
Sbjct: 187 LTNICADHLDFHHTFADYLAAKERFLTLLGPSPLVVNR--DDDHCRRMAALAGGPVIAVS 244

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTIS-------VEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G       +    A  +K ++T S       +         PL G   V NAL+AA  
Sbjct: 245 LTGPADVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLAAAA 304

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  GI    +         V  R E       G  +  D A    S++ +   I T   
Sbjct: 305 GLLHGISPDEIAAAFSSFQGVERRLEIYRCG--GFTVIDDTALNPGSIDAVFATITTFRY 362

Query: 382 GRIIVVFGCGGDRDQGKRPI----MGKIALDLADIAIVT--------DDNPRSEDPEKIR 429
            R++VV    G R      +    M +    L    IVT         D   +E+ +   
Sbjct: 363 RRLVVVNAIRGGRGAAINALNAITMARWQAALPFELIVTASADQVGPADTVTAEERQAFL 422

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E+      F    +   AI++A++ L   D+LV+ G
Sbjct: 423 GELSRTGAAFSFYLDLQTAIQSALQRLYDGDLLVLLG 459


>gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 96/480 (20%), Positives = 180/480 (37%), Gaps = 38/480 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+  +         +     +++ I  +S+DSR ++   +F+ + G K DG  F+  AI
Sbjct: 3   ELLIDEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++ +    L++       +  ++ V+ T + L   AS    K     +AVTG+S
Sbjct: 61  DKGAIAVITAR---LENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSS 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + QI  +        G  +               P+ +        +  +  
Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 164

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           V +  S  G +  RL  I +     FTN+G  HI+   +++    AK  L E    +   
Sbjct: 165 VEMGMSGFG-EIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVI 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD     + K       +    G +   I    +       + T+  +  + +  
Sbjct: 224 VLNADDD----MLSKIPLQYSSKYYRYGIKSGEIKACDIEKGEKDIKYTLKYKNLEKEIK 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   VYN+L A  + +  GI+   + E L+       R   +          V Y 
Sbjct: 280 LSIPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKRRLNIIEIGDIKIIDDV-YN 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419
              +S++  L  +R + + R I V G     G+        +GK +A    DI I + D 
Sbjct: 339 ANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDM 398

Query: 420 PRSEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
            +      I  E    G+            E      +++ + D ++V G +G +   IV
Sbjct: 399 SKY-----IAEESKVCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453


>gi|94269093|ref|ZP_01291368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [delta proteobacterium MLMS-1]
 gi|93451353|gb|EAT02221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [delta proteobacterium MLMS-1]
          Length = 326

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 22/250 (8%)

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R+   G+    + L    +  N  +  ++    +++   PL G+F + N L  A   +A+
Sbjct: 72  RLWRCGFASGELRLLSQRSGLNGIKARLAQAHGEWELTSPLVGDFNLLNLLGVAATGLAL 131

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    +   L      PGR E    + RG +++VDYAHT  +LE +L+ +R  +  R+I
Sbjct: 132 EMSPEAIAAALAVAPPPPGRLERF-VDRRGMKVFVDYAHTPAALEQVLRTLRPHS-RRLI 189

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-------- 437
           V+FGCGGDRD+GKR  MG+IA  LADI ++T DNPR+E+P  I A I  G+         
Sbjct: 190 VIFGCGGDRDRGKRGPMGEIAGRLADIVVLTSDNPRNEEPAAILATIEAGVKGTGLQRCR 249

Query: 438 -----------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
                      G+    +R  AI   I   +  DV+V+ GKGHET   + +  +    D 
Sbjct: 250 LEALLAGTGRRGYDLLVSRRRAIAETIFFADAGDVIVLCGKGHETYQQIGSQCR-YFDDR 308

Query: 487 DIIREILGLI 496
             + E L ++
Sbjct: 309 REVAEGLAVV 318


>gi|224282666|ref|ZP_03645988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313139824|ref|ZP_07802017.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313132334|gb|EFR49951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 89/512 (17%), Positives = 176/512 (34%), Gaps = 34/512 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ +        L    ++  +   + ++ D+R ++ G + +   G +     ++     
Sbjct: 17  LLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDIDE 73

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G  A V  + +S +       +  P L+V++ RK +SL ++  YG+  + +  V  T  
Sbjct: 74  RGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGT 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K    +        +  S  +    S+           ++ LTTP  +   + +   +  
Sbjct: 127 KGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELL 238
           G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K ++     
Sbjct: 187 GMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVRNSR 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--- 295
                A     D   ++            L  G          V A     + +      
Sbjct: 247 ALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYRIAA 306

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +  +F         +    A +A      I + +     H  +   + GR E     
Sbjct: 307 DGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDP 366

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  VDYAH   S+  +L  +         RI +V G  G++   +R  + + A   
Sbjct: 367 QSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHR 426

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----EMLNKQDV 461
            D  I T ++  +E    I  E+   I           +R  A+  AI       ++ ++
Sbjct: 427 IDSFIFTAEDTDTEPFIDICTEMQRYITVPGIASTVISDRPTAVTNAIYDARAHADRFNI 486

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG E      N       D  I+  + 
Sbjct: 487 ILIIGKGDERWIKDHNKHVPFEGDDRIVERMF 518


>gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 461

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 178/478 (37%), Gaps = 34/478 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+  +         +     ++ K+  +S+DSR ++   +F+ + G K DG  F+  AI
Sbjct: 3   ELLIDEIVRATEG-KLIKGNLKD-KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++ +    L +       +  ++ V+ T + L   AS    K     +AVTG+S
Sbjct: 61  DKGASAVITAR---LDNVECLKDFSVNVIYVNETLEALHKIASYYIKKFNIPFIAVTGSS 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + QI  +        G  +               P+ +        +  +  
Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +  +  G  +   + +K     FTN+G  HI+   +++    AK  L E+   +    
Sbjct: 165 VEMGMNGFGEIRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD     + K       +    G +   I    +       + T+  +  + +   
Sbjct: 225 LNADDD----MLSKIPLQYSSKYYRYGIKSGEIKACDIEKGEKDIKYTLKYKNLEKEIKL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   VYN+L A  + +  GI+   + E L+       R   +          V Y  
Sbjct: 281 SIPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIEKGDIKIIDDV-YNA 339

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             +S++  L  +R + + R I V G     G+        +GK+  D     ++T  N  
Sbjct: 340 NPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGN-- 397

Query: 422 SEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
               + I  E    G+            E      +++ + D ++V G +G +   IV
Sbjct: 398 --MSKYIAEESKVCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453


>gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 458

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 179/474 (37%), Gaps = 38/474 (8%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  +        ++ +  ++ VS+D+R IQ G ++V + G K DGH F+  A
Sbjct: 1   MITRTLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A++ S      +   +  ++ P++VVD+T + L   A R   +    ++ +TG+
Sbjct: 61  LDKGASAVLWS------ETEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +   +       G  +               P+ L           + 
Sbjct: 115 NGKTTTKDIVAALLATTYKVQKTEGNLNNH----------IGVPLTLL---RLEEDVEMA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S+ G  +   +  +  A   TN+G  H+    +++    AK+ +   L      
Sbjct: 162 VVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D                VL+ G   K  +  +   +     +    +  +  F 
Sbjct: 222 VY--NGDEPLLASRVAHLPLPEHVLTFGQGNKNDYYPESVHLQANGMMFTIRQAANRSFF 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYNAL A  +     +    V E L +L V   R E + T      I   Y 
Sbjct: 280 LPILGKHHVYNALAALAVARFFDVSWENVQEALSRLQVTRMRMEVIETEKGWTVINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVTDD 418
               S++  L+ ++ +T   + + V G     GDR+      +G +   ++ D       
Sbjct: 340 ANPTSMKAALQLLQELTGYKKKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGK 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
             R      I        P       +  R  A +  + +++  DV+++ A +G
Sbjct: 400 LARH-----IALAAQPFFPDGRVNAYEDKRALA-KDLLAVVSPGDVILLKASRG 447


>gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 461

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 110/473 (23%), Positives = 183/473 (38%), Gaps = 30/473 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            + E+         +    ++  VS+DSR ++ G +FV +VG K DGH FI  A   GA 
Sbjct: 5   TYEEVAKATGGRVEKSFSGEVLGVSTDSRSLKHGDLFVPLVGAKFDGHDFIKNAFEAGAS 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +   A   +D    +    P++ VD+T+  L   A           +A+TG+ GK++ 
Sbjct: 65  ATLC--AEDKRDRVLNLTLEKPVIFVDDTQNALLRLAGFYRSFFSIPFVAITGSVGKTTT 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +  R        G  +                I L   L  L    V  V +  
Sbjct: 123 KEMIAAVLTRRYRVLKNEGNFNNE--------------IGLPLTLFRLEDHQVGVVEMGM 168

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S  G +  RL  I K      TN+G  HI+   +++    AK+ + E L   +   +   
Sbjct: 169 SGFG-EISRLSAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVL--- 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLP 307
            +A S E+  +      R +  G +   I    + ++        ++ +  +F    PL 
Sbjct: 225 -NADSPELYAKRGTLTPRTVYFGIEKGDIRATDIVSMGRDGVIFKVTGDIPEFSVEIPLA 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   VYNAL A  + +  G+    +   L +L     R EF  T      I   Y  + +
Sbjct: 284 GTHNVYNALAAIAVGLEFGLSIDEIRRGLMELKPTKMRLEFKKTPFGAVVIDDCYNASPD 343

Query: 368 SLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           S++  L  +R +  GR  + + G     GD        +G+ A    DI I   ++  +E
Sbjct: 344 SMKAALNVLRELGEGRRKVAILGDMLELGDYAVKAHEEIGRYAAGKTDILICIGNH--AE 401

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
           D  K   E   G           EAI    E++   D+++V A +G +   IV
Sbjct: 402 DLAKGATEAGLGPRFIHTFSTNKEAIDRLGELVEDCDIILVKASRGMKLEEIV 454


>gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/480 (20%), Positives = 180/480 (37%), Gaps = 38/480 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+  +         +     +++ I  +S+DSR ++   +F+ + G K DG  F+  AI
Sbjct: 3   ELLIDEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++ +    L++       +  ++ V+ T + L   AS    K     +AVTG+S
Sbjct: 61  DKGAIAVITAR---LENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSS 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + QI  +        G  +               P+ +        +  +  
Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 164

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           V +  S  G +  RL  I +     FTN+G  HI+   +++    AK  L E    +   
Sbjct: 165 VEMGMSGFG-EIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVI 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD     + K       +    G +   I    +       + T+  +  + +  
Sbjct: 224 VLNADDD----MLSKIPLKYSSKYYRYGIKSGEIKACDIKKGEKDIKYTLKYKDLEKEIK 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   VYN+L A  + +  GI+   + E L+       R   +          V Y 
Sbjct: 280 LSVPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIEKGDMKIIDDV-YN 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419
              +S++  L  +R + + R I V G     G+        +GK +A    DI I + D 
Sbjct: 339 ANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDM 398

Query: 420 PRSEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
            +      I  E    G+            E      +++ + D ++V G +G +   IV
Sbjct: 399 SKY-----IAEESKVCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453


>gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
 gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
          Length = 458

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 180/474 (37%), Gaps = 38/474 (8%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  +        ++ +  ++ VS+D+R IQ G ++V + G K DGH F+  A
Sbjct: 1   MITRTLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A++ S      +   +  ++ P++VVD+T + L   A R   +    ++ +TG+
Sbjct: 61  LDKGASAVLWS------ETEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +   +       G  +               P+ L           + 
Sbjct: 115 NGKTTTKDIVAALLATTYKVQKTEGNLNNH----------IGVPLTLL---RLEEDVEMA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S+ G  +   +  +  A   TN+G  H+    +++    AK+ +   L      
Sbjct: 162 VVEMGMSNFGEIELLSNIAEPDAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D                VL+ G   K  +  +   +     +    +  +  F 
Sbjct: 222 VY--NGDEPLLASRVAHLPLPEHVLTFGQGNKNDYYPESVHLQANGMMFTIRQAANRSFF 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYNAL A  +    G+    V E L +L V   R E + T      I   Y 
Sbjct: 280 LPILGKHHVYNALAALAVARFFGVSWENVQEALSRLQVTRMRMEVIETEKGWTVINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVTDD 418
               S++  L+ ++ +T   + + V G     GDR+      +G +   ++ D       
Sbjct: 340 ANPTSMKAALQLLQELTGYKKKMAVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGK 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
             R      I        P       +  R  A +  + +++  DV+++ A +G
Sbjct: 400 LARH-----IALAAQPFFPDGRVNAYEDKRALA-KDLLAVVSPGDVILLKASRG 447


>gi|303232214|ref|ZP_07318915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Atopobium vaginae PB189-T1-4]
 gi|302481692|gb|EFL44751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Atopobium vaginae PB189-T1-4]
          Length = 652

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 105/530 (19%), Positives = 167/530 (31%), Gaps = 74/530 (13%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ---------GAEAIVVSSAYS 78
             I  +  +S+      IF A  G           A            GA   +  +  +
Sbjct: 92  TPITGIDCNSQVAAPQHIF-ACKGA----------AFKAAYLAQALAQGACCYMCEANKA 140

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
            +   A        LVV + R  +++ +   +G+  + +  +  T  K    +       
Sbjct: 141 RELADAC--PGATQLVVTDIRHAMAVCSPIAWGRPDKQLCCIGVTGTKGKSTTTYMLRSI 198

Query: 139 RSGL-------------SSFQIGPTSTISSFAQDNR-LTTPSPIYLAKALSYLSSQGVTH 184
                                IG  ST   F  +    TTP    L + L   ++  + +
Sbjct: 199 LEAHCAARGITSTHGASPVGIIGSISTYDGFINEKSTNTTPEAPDLWRHLHNAAAAKLAY 258

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E SS  L   R+ G+ L A +F N+ RDHI   +          +L      K S  
Sbjct: 259 MVLEISSQALKYERVYGLHLYASAFLNISRDHISPVEHPTFEDYFASKLTIFSYAKHSVV 318

Query: 245 I----IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                  A  A +       H     V                A   +       E K  
Sbjct: 319 NLNSKHAARIANTACSCSDTHFCMVDVPKNDASADSAQADDARADSAQADEFTREELKAL 378

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDS---------------------------ALVL 333
              +P      V  A     + ++                                   +
Sbjct: 379 LNQYPCTRATDVTCARGGFAMRVSGMAQPVYIPMHGSFNAQNALVALTLARLVGVGDDAI 438

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG 392
                   VPGR EF+ T        VDYAH   S +    +IR    S RI  VFGC G
Sbjct: 439 VKGIAHTRVPGRMEFIPTTHPRIHGIVDYAHNRLSFQTFFASIRREFPSARIYAVFGCPG 498

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAI 449
           ++   +R  + +IA   AD  I+T D+P SED   I  E+   +P    +  + NR +AI
Sbjct: 499 NKAFERRRDLPEIAGAYADEIILTKDDPGSEDTRTICEEMASHLPAHARYCIEPNRAQAI 558

Query: 450 RTAIE---MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
             A+          V+ + GKGHE      +G      D  +  + +  +
Sbjct: 559 FDAVTDAHRAQVDSVICMLGKGHENTQHEAHGYSSYPSDARVYADAIAAV 608


>gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
 gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
          Length = 460

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 176/477 (36%), Gaps = 32/477 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+  +         +     ++ K+  +S+DSR ++   +F+ + G K DG  F+  AI
Sbjct: 2   ELLIDEIVRATEG-KLIKGNLKD-KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++ +    L +       +  ++ V+ T + L   AS    K     +AVTG+S
Sbjct: 60  DKGASAVITAR---LDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSS 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + QI  +        G  +               P+ +        +  +  
Sbjct: 117 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 163

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           V +  +  G +  RL  I +     FTN+G  HI+   +++    AK  L E    +   
Sbjct: 164 VEMGMNGFG-EIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVI 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD     + K       +    G +   I    +       + T+  +    +  
Sbjct: 223 VLNADDD----MLSKIPLQYSSKYYRYGIKSGEIKACDIEKEEKDIKYTLKYKNLAKEIK 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   VYN+L A  + +  GI+   + E L+       R   +          V Y 
Sbjct: 279 LSVPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDDV-YN 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419
              +S++  L  +R + + R I V G     G+        +GK +A    DI I + D 
Sbjct: 338 ANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDM 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
            +    E     +              E      +++ + D ++V G +G +   IV
Sbjct: 398 SKYIAEESKVCGMKEN--NIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIV 452


>gi|311063990|ref|YP_003970715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
 gi|310866309|gb|ADP35678.1| Mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 519

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/512 (17%), Positives = 176/512 (34%), Gaps = 34/512 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ +        L    ++  +   + ++ D+R ++ G + +   G +     ++     
Sbjct: 17  LLREIIRADRWTLDAHDIEGADTAFSAITYDTRDVREGTL-LCCKG-RFK-AEYLHDIDE 73

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G  A V  + +S +       +  P L+V++ RK +SL ++  YG+  + +  V  T  
Sbjct: 74  RGLAAYVADTDFSAE-------TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGT 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K    +        +  S  +    S+           ++ LTTP  +   + +   +  
Sbjct: 127 KGKTTTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELL 238
           G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K ++     
Sbjct: 187 GMKYLVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVCNSR 246

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV--- 295
                A     D   ++            L  G          V A     + +      
Sbjct: 247 ALVLGAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAAYVTASPANAEHSAYRIAA 306

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +  +F         +    A +A      I + +     H  +   + GR E     
Sbjct: 307 GGADLGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDP 366

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  VDYAH   S+  +L  +         RI +V G  G++   +R  + + A   
Sbjct: 367 QSNTLAIVDYAHNYASVTALLDFVDERFGSQHPRITLVTGSAGNKAYDRRKEIVEAAQHR 426

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAI----EMLNKQDV 461
            D  I T ++  +E    I  E+   I           +R  A+  AI       ++ ++
Sbjct: 427 IDSFIFTAEDTDTEPFIDICMEMQRYITVPGIASTVISDRPSAVTNAIYDARAHADRFNI 486

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++ GKG E      N       D  I+  + 
Sbjct: 487 ILIIGKGDERWIKDHNKHVPFEGDDRIVERMF 518


>gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 461

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 176/477 (36%), Gaps = 32/477 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+  +         +     ++ K+  +S+DSR ++   +F+ + G K DG  F+  AI
Sbjct: 3   ELLIDEIVRATEG-KLIKGNLKD-KVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++ +    L +       +  ++ V+ T + L   AS    K     +AVTG+S
Sbjct: 61  DKGASAVITAR---LDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSS 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + QI  +        G  +               P+ +        +  +  
Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIFNLED---THQIAV 164

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           V +  +  G +  RL  I +     FTN+G  HI+   +++    AK  L E    +   
Sbjct: 165 VEMGMNGFG-EIRRLKNIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVI 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD     + K       +    G +   I    +       + T+  +    +  
Sbjct: 224 VLNADDD----MLSKIPLQYSSKYYRYGIKSGEIKACDIEKEEKDIKYTLKYKNLAKEIK 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   VYN+L A  + +  GI+   + E L+       R   +          V Y 
Sbjct: 280 LSVPGIHNVYNSLAAICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDDV-YN 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419
              +S++  L  +R + + R I V G     G+        +GK +A    DI I + D 
Sbjct: 339 ANPDSMKAALSVLRDLPAKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDM 398

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
            +    E     +              E      +++ + D ++V G +G +   IV
Sbjct: 399 SKYIAEESKVCGMKEN--NIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIV 453


>gi|58699992|ref|ZP_00374557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533489|gb|EAL57923.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 218

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/215 (38%), Positives = 122/215 (56%), Gaps = 12/215 (5%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           +  +    HN Q +T+ ++ + ++  FP+ G+FQ YN L A G+      +       +E
Sbjct: 10  YFIRANINHNGQHLTVKIDNQIYNTFFPVLGKFQAYNLLCAIGISGLNYREI-----CVE 64

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           KL   PGR E V         +VDYAHT ++L+  L +++   + +II+VFGCGG+RDQ 
Sbjct: 65  KLVSPPGRMEKVKP-----FAFVDYAHTPSALKQALLSLKWHINKKIILVFGCGGNRDQT 119

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML- 456
           KR  MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E G R EAI   +++  
Sbjct: 120 KRSEMGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAY 179

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           N+  +L+VAGKG+E   I+ N       D ++I+ 
Sbjct: 180 NEGMILLVAGKGNEKFQIIGNQT-FEFSDVEVIKN 213


>gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
 gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
          Length = 509

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 102/504 (20%), Positives = 205/504 (40%), Gaps = 49/504 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL++++     E+I+      +   + +I+ +S +S +I+A  +FVAI G   DGH +I
Sbjct: 1   MKLREILKD--IEIIDIRGKIDL---DTEISNMSYNSINIEASGLFVAIKGKITDGHKYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
             A   GA   VV     +           P + VDNTRK L+  A   Y    +   ++
Sbjct: 56  KNAKNHGAIVAVVEDFKEVY---------IPQIKVDNTRKSLADLAKNFYKDPSKDLKVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            +T T+GK++ +  +++I   + +++  IG   T  +     + LTTP  + L K    +
Sbjct: 107 GITATNGKTTTSFMLKKILSENKINTGIIGTVYTKFADVNIPSILTTPESLELQKYFKEM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + ++HV +E SS      R++ I     SF NL R+HID H + + YF          
Sbjct: 167 LDKNISHVVMEVSSSAQQMLRVNNIDFDIVSFGNLSREHIDQHGSFENYFR-DKSKIILN 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--------IHLKKVCAIHNKQ 289
             K S A++  D+ Y   + ++   +   +        F            K     N+ 
Sbjct: 226 AKKGSFALLNMDNEYIASLKEKTKASVLTISMENLDSDFGISKLDLSTGFGKFMFHVNRD 285

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              I+++ + F+      G   V N ++A  L + + +D  ++L  LE    V  RFE +
Sbjct: 286 IKEINLKKQSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVERRFELI 345

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  ++  D+     ++++ +  +  +    + +++   G+R       + +     
Sbjct: 346 YDE--KFKVLDDHFANEKNIDVTMTTLSQMNYKNLHILYAIRGNRGVELNRAVDERLCFW 403

Query: 410 ADIA----IVTD--------DNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML 456
                   + T          +  +++ + + AE++       +      + I   ++  
Sbjct: 404 LKKLKASTLFTTFSEDTVKQKDKVTQEEKAVYAEVLKNNNIETVYFNELKDGINNILKKA 463

Query: 457 NKQDVLVVAG-----KGH---ETV 472
              D++++AG     KG    E  
Sbjct: 464 QSGDIVLLAGCQGMDKGAKFVEKY 487


>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 442

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 153/453 (33%), Gaps = 36/453 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              +  I   S DSR+++ G +FV + G+K DGH FI +AI  GA   +V+    L    
Sbjct: 2   GDPDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRH 61

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           +       ++ V++T   L   A +   K   +++AVTG+ GK++    +  +       
Sbjct: 62  SVHPP--LVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEKYSI 119

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  ++               I L   L  L+      V     ++  +  RL  + 
Sbjct: 120 LKTHGNLNSE--------------IGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELA 165

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                      +                    E L     AI+  DD + + +  +    
Sbjct: 166 RPNVGVITRIAESHIEKLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPGE 225

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                  G     +    V    +K    I    K      PL G+  + NAL A  +  
Sbjct: 226 VL---YYGLTDGDLSAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGR 282

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+D    +  LE       R +          I   Y     S       +  +   R
Sbjct: 283 VFGLDLTQSIRALEGFTGTSMRNQIKYHKDM-IIIDDTYNANVQSTLAAFDVLTNLPLNR 341

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS--EDPEKIRAEIIHGIP 437
            I V G     GD  +     +G+ A     D  I   +  ++  E  +K+      G+P
Sbjct: 342 RIAVLGDMFELGDYTEKAHKTVGEQAVNRGFDYLITVGELSKTTQEAADKL------GMP 395

Query: 438 GF--IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               I   +R +AI+  ++++   D ++V  KG
Sbjct: 396 EHQNIHVADREQAIQRILQIVKSGDGILV--KG 426


>gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
 gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
          Length = 464

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 171/476 (35%), Gaps = 43/476 (9%)

Query: 1   MKL--QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL   ++I     +LI            R IN VS+DSR ++ G +F+A++G + DGH 
Sbjct: 1   MKLTVSEVIEATGGQLIAGDKW-------RIINGVSTDSRTVKPGQLFIALIGERYDGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+  GA A+++S          T   + PI+ V++T + L   A+         ++
Sbjct: 54  FIDNAVTNGASAVMLSKD--------TADWDIPIIKVEDTLEALKRLAAYYRRMFYLTVV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG+SGK++   F+  +  +        G  +          LT               
Sbjct: 106 AITGSSGKTTTKEFIYAVLSQKYNVLKNRGNLNNQ----IGLPLTVFDI---------NP 152

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +  S+ G      D  +   G  TN+G  HI+    QQ    AK+ LF+   
Sbjct: 153 HHQYAVLEMGMSALGEIHDLADIARPHIGVITNIGLSHIEKLGNQQNILRAKLELFDFF- 211

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A++  DD     +            + G     +   ++          +  +G+
Sbjct: 212 GDNDVAVLNGDDPLLCTLHSVLPCRVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPDGQ 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    + G   VYN+L A  + +   +    +   +E L+  P R            I
Sbjct: 272 REDIYLNIAGFHNVYNSLAAVLVGMEANVPLKQIKAGIESLYDTPQRLRMFQIYPDIQLI 331

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
              Y    +S+   ++ +  + S R I V G     G   +     +G+I        +V
Sbjct: 332 DDTYNANPDSMRAAIEVLCDLDSARKIAVLGDMLELGGIAETAHTELGRIVAQKRIDVLV 391

Query: 416 TDDNPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T           I       G+         +  +AI    E +   D +++  KG
Sbjct: 392 TV----GRLAHFIADGAEASGMDAHNIYRFNSNDDAISWLDEHITHGDAILI--KG 441


>gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 457

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 183/487 (37%), Gaps = 49/487 (10%)

Query: 1   MKL--QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L  ++++     +L++             ++ +S+DSR I+ G +F+ + G + +G  
Sbjct: 1   MILTVKEILDATEGKLLSG-------DINICVSGISTDSRTIKPGDLFIPLKGERFNGEK 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A+  G  A +  S   ++        N PI+ V++T+  L   A     K     +
Sbjct: 54  FIDDALNVG-SASLTESTNCIRH------DNKPIIFVEDTKDALHRIAKYYRSKFNIPFI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG+SGK++    +  +          IG  +               P+ L        
Sbjct: 107 AVTGSSGKTTTKDMIYDVLSMKYNVLKTIGNFN----------NEIGLPLTLFTLNDD-- 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              +  V +  S  G +  RL  I       +TN+G  HI+   +++    AK  L E+ 
Sbjct: 155 -HDMAVVEMGMSGFG-EIRRLKNIASPNVAVYTNIGVAHIEKLGSRENILKAKSELIEDF 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              ++  I   DD     ++K     G + ++ G     I    +       +  + ++G
Sbjct: 213 KNGDTVVINADDD----MLIKMLEKKGPKFVTYGINNGDIKAFDIELNEESSKYKVLIDG 268

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    +PG+  +YN+L A  + I   ++   + + L K      R   +        
Sbjct: 269 YVLDVELNVPGKHNIYNSLAAICIGIQFDVNKEDIRKALAKFQPSAMRLNIIDVAGIKII 328

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIA 413
             V Y    +S++  L  +   T  R + V G   +    +D   R  +G+   +     
Sbjct: 329 NDV-YNANPSSMKAALSVLGGYTERRKVAVLGNMLELGQYKDIAHR-EVGEYVKENDIDV 386

Query: 414 IVTDDNPRSEDPEKIRA-EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGH 469
           ++T  +       KI    I  G+         N  EAI     ++ + D+ +V G +G 
Sbjct: 387 LITVGDY----ALKIADGAIEKGMNNDNVFRCANNAEAIDVIKNIMKESDIFLVKGSRGM 442

Query: 470 ETVHIVT 476
           E   IV 
Sbjct: 443 EMEEIVK 449


>gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
          Length = 457

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 174/475 (36%), Gaps = 46/475 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L      E  +          E KI ++  DSR ++   +F+AI+G   DGH FI  A+ 
Sbjct: 4   LTLAQIAEAASG--KIIKGKAEIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSAVE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTGTS 124
            GA+A++V    +         SN  ++ VD+T K L   A     K  +  + A+TG+ 
Sbjct: 62  NGAKAVIVDRQIND-------YSNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSV 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    +  +  +   +    G                  P+ L +  S         
Sbjct: 115 GKTSTKDMIAAVLAQKYKTLKTSGN----------YNNQIGLPLTLLRLCSK---DEFAV 161

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S  G  +   +  +      TN+G  HI+   + +    AK  L  + L K   A
Sbjct: 162 LEMGMSGFGEIELLAELARPQIAVITNVGPAHIEQLGSIENVAAAKKEL-LDSLDKSGTA 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  D+ Y++++ +  ++              +   K     N+++  I  +GK   F  
Sbjct: 221 ILNYDNEYTRKMAENFNSKLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGKKLKFYL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG+  +YNAL A  +     ++   + + L K+     R E     +    I   Y  
Sbjct: 281 NKPGKHNIYNALAAIAIGFLNNMNPKGIQDGLSKIDFSDLRMEIKELENGAIVINDSYNA 340

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNP 420
              S+   L  +  +   R I V       G  ++     +G+ IA    D+ I      
Sbjct: 341 NPISVRAALDVLAEMKGKRKIAVLASMLELGKMEKKAHLEIGEYIAKQNIDLLI------ 394

Query: 421 RSEDPEKIRAEIIHG-------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +I   I  G       +       ++   ++   + L K D+L++  KG
Sbjct: 395 ---TVGEIAELIAEGAERTAMPVEKIYSFADKASTLKFLKDNLKKDDLLLI--KG 444


>gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 680

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 102/563 (18%), Positives = 209/563 (37%), Gaps = 86/563 (15%)

Query: 6   LIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L+ + F +  ++   I      + +I+ +++D   + +G +FV               A 
Sbjct: 100 LLREIFEDAGVDARWIALEDDEDVEISGIANDVNALLSGDLFVC------------GSAR 147

Query: 65  AQGA------EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--N 116
             GA      EA+   +   + + +    ++ PI VV++  + L+  A   YG   +   
Sbjct: 148 EGGAMEDAAREAVAAGAVAVVSERAIEGLADVPIAVVEDVDEALADIARVFYGDPSKALT 207

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---SPIYLAKA 173
            +A+TG+ GK++ +  V+ + + + +    +G                      +   + 
Sbjct: 208 AIALTGSVGKTTTSYLVKAVFEEADIRMGLVGSNGNYVGDELKLTAQGGRGSDALQFQQL 267

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN----------LGRDHIDYHQTQ 223
            + ++  G     +E S+  + +    G+     + T+            +D+       
Sbjct: 268 TAGIADNGAQAAVMEVSAEQVRRKATRGMNFDIVALTSPLEGPDAMSDRRKDYRGLDAEY 327

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV--------GYQGK 275
            ++     +  E+   + +   + A D   K           + +             G 
Sbjct: 328 SSHVAEVFKALEDAETQRAVINVDAIDDNDKTPYHELCKEHAKGVPQLTYSVDPENPNGA 387

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            ++  +V     +  V++S    + + +  L GE  V     A  + +A  I   ++   
Sbjct: 388 DVYPARVDYSLFETAVSLSTPAGNVEVVVGLVGEHMVNAICCATAIGLAAEIPLDVIAAG 447

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-- 393
           LE    +PGR E V        + VD A+T  ++  ++ +++     R+I V GC G+  
Sbjct: 448 LEATDSIPGRMELVDAGQ-DFSVLVDSANTPEAIRSVIDSVKATNCRRVITVIGCEGEMA 506

Query: 394 -RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI------------ 440
             ++G+R ++GK   D +D+  VT+D+P++EDP KI  +I  G    I            
Sbjct: 507 ESERGQRAVIGKTVHDHSDVVFVTNDSPKAEDPYKILEDICAGFRDEIYSKPGMEDEALF 566

Query: 441 ---------------------------EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
                                         +R  AIR AI M  + DV+++ G+G +   
Sbjct: 567 PFLKDMYEVHENAQYECMRLQNLVRRYVMVDRYHAIRAAIGMAERDDVVLIIGRGAKDYF 626

Query: 474 IVTNGEKKMSVDCDIIREILGLI 496
           +V   EK    D    R+ L  I
Sbjct: 627 VVGR-EKHWFDDVVEARDALQKI 648


>gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 540

 Score =  160 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 93/494 (18%), Positives = 186/494 (37%), Gaps = 40/494 (8%)

Query: 3   LQDLIYKDFPELI---NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           L+ LI     + I              + KI+ ++  S+++    +F  + G++ DGH F
Sbjct: 7   LRALIENYPIKSIVMPGNSGNIKQALDDIKISGLNYHSQNVSQNELFFCLTGHQYDGHAF 66

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A  +GA A++V                   +VV+N+R+ LS  +++ Y    +  N+
Sbjct: 67  AEKAYNKGAVALIVEREIPHIPLL--------QVVVENSRRALSHLSAKFYQHPSKSMNM 118

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +T T+GK++    + QI   +  +         +    +++ LTTP  + L + L+ +
Sbjct: 119 IGITSTNGKTTTTYMIDQILSSNKPTGLLGTVIVKLGEETKESDLTTPESLDLQRYLASM 178

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             + + + ++E SS GL+  R+  +        N+ RDHID H + + YF AK RL EE+
Sbjct: 179 KRKNINYCTMEVSSSGLELERVSAVDYDIAIINNISRDHIDQHGSFENYFAAKQRLVEEI 238

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---- 293
              +   I    +   K +           +        I    + +      + I    
Sbjct: 239 QEDKRAVINVDCENACKMINYTKAKVITYSVKGIDATIGIDNLDLSSGSASFDLVINRGF 298

Query: 294 ------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  ++   F     + G   VYNA  AA   + +      +   L K   V  RF+
Sbjct: 299 STLSGKWIKPGRFKIKLKVLGLHNVYNATSAAISTLLLDEPITRIQSELAKFSGVERRFQ 358

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +       +I  D+     ++E+ ++ +  +    + +++   G R +       K  +
Sbjct: 359 LIFDK--KFKIIDDHFANPGNIEVTMETLGKMDFNNLKILYAIRGGRGKTVNEENTKALI 416

Query: 408 DLADI-----AIVTDDNP--------RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI- 453
                       VT  +            + +   + +               AI++ I 
Sbjct: 417 KWLKKLNLQEVYVTSSDEIVGIENKVTMTERDTTLSLLKSAGIRVRYFSQLRSAIKSVII 476

Query: 454 -EMLNKQDVLVVAG 466
              L   DVL++AG
Sbjct: 477 ERHLQTGDVLLLAG 490


>gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL F2-515]
          Length = 242

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 21/234 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   I
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKI 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T + Y NAK
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAK 217


>gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
          Length = 464

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 168/446 (37%), Gaps = 31/446 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS+D+R IQ G +FV ++G K DGH FI +AI  GA+A+ V   ++ +   A   ++
Sbjct: 26  IGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGAQAVFVQEGHNTKTIQAF--ND 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T K L   +       P   + VTG+ GK+S    +  +          +G 
Sbjct: 84  VWLIEVKDTLKALQAISVYYRKLFPIPFIGVTGSVGKTSTKDLISGVLSGKFNVHKNLGN 143

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ L    +   +  ++ + +  SS G  +  +D +    G  
Sbjct: 144 FN----------NEIGLPLTLF---NLEENHQISVLEMGMSSFGEIRDLVDMVHPEIGVI 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI++  +++    A          + +  ++  DD Y + + K   +       
Sbjct: 191 TNIGVSHIEHLGSKEGILKA-KMEIASNFKEGNYLLVNGDDEYLRCIHKDDKDYTVIFYG 249

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +     F  +            T+ + G+   F     G   VYNAL A  + +   +  
Sbjct: 250 LSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAAVWIGLKYHMTF 309

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387
             +   L+       R E +            Y  + +S++  L  +  + S R I V  
Sbjct: 310 EEIQRGLDGFQPSKMRLEVITKGRMKIINDA-YNASPDSMKAALDVLDHMKSNRKIAVLG 368

Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPG--FIEK 442
             F  G   ++G R +    A    DI +        E    I  E    GI        
Sbjct: 369 NMFEMGSFSEEGHRSVGAYFAKKNIDILVTV-----GEMANWIGLEAKKYGIEENSIRHV 423

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
            N  EAI    + + ++D ++V  KG
Sbjct: 424 FNNKEAIEMLGQFVQEEDAILV--KG 447


>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 468

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 90/500 (18%), Positives = 169/500 (33%), Gaps = 62/500 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  +I      L++          + +I  +S+D+R I  G +FVA+ G + DGH FI +
Sbjct: 6   LSKIIEATGGTLLSGT-------PDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDE 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA   +VS     ++          I+ V +T K L   A     +    ++AVTG
Sbjct: 59  AFKKGAIGAIVSREVESKNI---------IIKVRDTLKTLGDIAKIYREEFDIPVIAVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    +  I  R   +    G                  P+ L +         +
Sbjct: 110 SNGKTTTKEMLGYILTREFKTVKAKGS----------YNNFVGVPLTLLEMDR---HTQL 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +E +  G    RL  I   +        D        +     +     E LP++ 
Sbjct: 157 AVLEMETNLLG-GIKRLCEIAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD Y  ++ + +         V  +        +       + T++     +  
Sbjct: 216 VAVLNADDPYVLKMKEISRTKRIVTFGVENKS-EFSASNIRVGDTFLEFTLNNN---YRV 271

Query: 303 LFPLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                    VYN L A  +     G+    V++ L+       R E +           +
Sbjct: 272 KLNTISYCNVYNGLAAIAVSHVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNE 331

Query: 362 ---------YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
                    Y     S++  L  +  +      I + G     G++       +GKI  D
Sbjct: 332 ESVRIINDCYNANPQSMQEALVAVGKMNSYTNKIAILGEMLELGEKAPEFHYQIGKICAD 391

Query: 409 LADIAIVTDDN------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                ++T  +        +ED    R  I   +          EA    + +L   D++
Sbjct: 392 CGFDMLITVGDLAQYMAHGAEDEGMPRENIFVSVNNV-------EASDRLLRILRPGDIV 444

Query: 463 VVAG-KGHETVHIVTNGEKK 481
           ++ G +G +   IV    K+
Sbjct: 445 LIKGSRGMKMEEIVERLRKR 464


>gi|283782955|ref|YP_003373709.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Gardnerella vaginalis 409-05]
 gi|283441889|gb|ADB14355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Gardnerella vaginalis 409-05]
          Length = 599

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/549 (16%), Positives = 168/549 (30%), Gaps = 83/549 (15%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            FP    +      + D+R I++G +   I GN +    ++  A  +G  A V   +Y+ 
Sbjct: 61  YFPNIDADEYFTNATYDTRDIKSGTLLF-IKGNFK--SEYLLDADNKGLAAYVAEQSYAQ 117

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +         L+V + +K +S+ A+  +G   E +  V  T  K    +        
Sbjct: 118 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIVGITGTKGKTTTAYFTHAIL 170

Query: 140 SGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +  S  +    S+           ++ LTTP      K +       + ++ +E SS   
Sbjct: 171 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNDMKYLVMEVSSQAY 230

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQ------------------------------- 223
             +R+ G+K    +F N+  DHI   +                                 
Sbjct: 231 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLL 290

Query: 224 ----------------------QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                                 +          +      +      DD Y++ +     
Sbjct: 291 LQDAERNNVLVTTFARIKKDEIEGDACENNNFDDLDDDCINYCAPANDDDYTELLTPDYI 350

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAG 320
                             +      N  +  +      +F         ++   A +A  
Sbjct: 351 AMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIA 410

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + I  D+ L   H  +   + GR E            VDYAH   S + +L  +    
Sbjct: 411 GELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFVEERY 470

Query: 381 SG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                RI ++ G  GD+   +R  + + A +  +  I T ++  +ED   I  ++   + 
Sbjct: 471 GKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYVT 530

Query: 438 G----FIEKGNRIEAIRTAIEMLNKQD-------VLVVAGKGHETVHIVTNGEKKMSVDC 486
                     +R EAI  A       +       +L+  GKG E              D 
Sbjct: 531 NPNVSSRIIIDRAEAIECAYNDAASSEQKNGRLNILLAIGKGDERWIKNKRKHVPYEGDS 590

Query: 487 DIIREILGL 495
            +I+ + GL
Sbjct: 591 FVIKRLFGL 599


>gi|297242762|ref|ZP_06926700.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
 gi|296888973|gb|EFH27707.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
          Length = 601

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/549 (16%), Positives = 169/549 (30%), Gaps = 83/549 (15%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            FP    +      + D+R I  G +   I GN +    ++  A  +G  A V   +Y+ 
Sbjct: 63  YFPNIDADECFTNATYDTRDITPGTLLF-IKGNFQ--SEYLLNADNKGLAAYVAEQSYAQ 119

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +         L+V + +K +S+ A+  +G   E +  V  T  K    +        
Sbjct: 120 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIVGITGTKGKTTTAYFTHAIL 172

Query: 140 SGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +  S  +    S+           ++ LTTP      K +      G+ ++ +E SS   
Sbjct: 173 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVSSQAY 232

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQ------------------------------- 223
             +R+ G+K    +F N+  DHI   +                                 
Sbjct: 233 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLL 292

Query: 224 ----------------------QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                                 ++         +    + +      DD Y++ +     
Sbjct: 293 LQDAERNNVLVTTFARIKKDEIESDACENDNFDDIDDDRINYCAPANDDDYTELLTPDYI 352

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAG 320
                             +      N  +  +      +F         ++   A +A  
Sbjct: 353 AMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIA 412

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + I  D+ L   H  +   + GR E            VDYAH   S + +L  +    
Sbjct: 413 GELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFVEERY 472

Query: 381 SG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                RI ++ G  GD+   +R  + + A +  +  I T ++  +ED   I  ++   + 
Sbjct: 473 GKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYVT 532

Query: 438 G----FIEKGNRIEAIRTAIEMLNKQD-------VLVVAGKGHETVHIVTNGEKKMSVDC 486
                     +R EAI  A       +       +L+  GKG E              D 
Sbjct: 533 DPNVSSRIIIDRAEAIEYAYNDAANSEQKNGRLNILLAIGKGDERWIKNKRKHVPYEGDS 592

Query: 487 DIIREILGL 495
            +I+ + GL
Sbjct: 593 FVIKRLFGL 601


>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
 gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
          Length = 461

 Score =  158 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 184/484 (38%), Gaps = 41/484 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++      ++I           + KI ++S DSR I  G +FVAI+G + DGH FI
Sbjct: 4   MSLAEIRNAVSGKII-------QGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
           P+A+++GA A++V  +               I++V++T + L   A           ++ 
Sbjct: 57  PEAVSKGARALIVDHSIKA-------YPGVGIILVEDTTRALQDLARYHRMLIKGLTVIG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    +  + +     +   G  +               P+ L    S    
Sbjct: 110 ITGSAGKTTTKDMIASVLKEKYNVTKTRGNLNNYY----------GLPLTLL---SLDGD 156

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           + +  + +  S  G  +      K   G  TN+G  H++  +T      A+ +       
Sbjct: 157 EEIAVLEMGMSKLGEIELLASISKPDIGVITNVGPTHLENLKT--VGNVARGKRELIEGL 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEG 297
             +   I   D      MK        +         ++ + +      + ++     + 
Sbjct: 215 PTNGLAILNYDNKYVRDMKDYVEGKKVIYYGFSPEADVYAEHIKVDEKNKNISFIAHYKT 274

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +        PG+  VYNAL A  +   + +D   +   L  + +   R++     +    
Sbjct: 275 EKERITLQKPGKHNVYNALAAIAVARYLRVDWGGIKNGLYNIDLSSLRWDVRDLGNEITL 334

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIA 413
           I   Y     S++  ++    I   R+I V G     GD ++     +G+ +A    D+ 
Sbjct: 335 INDTYNANPLSMKAAIEATFDIAQERVITVLGGMLELGDMEEKAHVDLGRYVAERNVDVL 394

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETV 472
           I   +  R       R+    G+    +  N  EA R  ++++ K D ++V G +G++  
Sbjct: 395 ITVGELGR----LTARSAEKEGMKNVYQADNNQEASRVLLDLIKKGDTILVKGSRGNKME 450

Query: 473 HIVT 476
            IV 
Sbjct: 451 EIVK 454


>gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 293

 Score =  158 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 21/234 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + ++  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+             +  + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEK---------QLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           +   GV+   +E SSH L Q R+ G       F NL +DH+DYH T   Y NAK
Sbjct: 164 MLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAK 217


>gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Halanaerobium
           praevalens DSM 2228]
          Length = 465

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 172/475 (36%), Gaps = 40/475 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL++++     EL+           + K+ E+  DSR ++ G++F+AI+G  +DGH ++ 
Sbjct: 5   KLKEIVAFTKAELL-------QGNLDLKVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLK 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAV 120
           +A+  GA A++V               N  +L V++T K L   A     K  +  ++ +
Sbjct: 58  EAVKNGASAVIVDRNSPAI---QAAYPNLSVLKVEDTTKALQAIAFNYRHKFDDLKVIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +           G                  P+ L          
Sbjct: 115 TGSAGKTTTKDMIFSVLSEKYYCLKTEGN----------YNNQIGLPLTL-----LRLDG 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 +E    GL +  L         G  TN+   H++   + +    AK  L +  L
Sbjct: 160 REDFAILEMGMSGLAEIDLLAKIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDN-L 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AI+  D+ Y+K++   +                I      +     +   + + K
Sbjct: 219 TAADTAILNYDNQYTKKIGTNSKAQTIYFGFEKGADARIENYFFNSKTETLKFEFTYQAK 278

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           ++ F+F   G+  +YN L A  +     +    + + L K      R EF+   ++   I
Sbjct: 279 NYKFIFNKAGKHNLYNILPALIIAFKYKLKPEEIQKGLLKTKFSSLRMEFIQLKNKARII 338

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
              Y     S++  L  +  I + R I +       G++   K   +G  A       ++
Sbjct: 339 NDCYNANPLSVKAALDVLEQIKAKRKIAILASMLELGEKSLKKHQQIGLYAAAKKIDLLI 398

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           T         + I  +    +         N  E I   +  +  +D++++  KG
Sbjct: 399 TI----GPKAQAIATKARTKMKSEQVINLANNKECIDFLLSEIKAEDLILI--KG 447


>gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase
           [Clostridium sticklandii DSM 519]
 gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Clostridium sticklandii]
          Length = 457

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 168/477 (35%), Gaps = 54/477 (11%)

Query: 6   LIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++++        +    KI  V +DSR IQ    ++AI G   DG+ FI QAI
Sbjct: 1   MIKLTKNQILSWTSGENNFKDYNPKIANVVTDSRKIQENDCYIAIKGENFDGNDFIEQAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A  I+ +   S ++          ++ V++T   L   A     +     LAVTG+S
Sbjct: 61  NNKASVILSNRQSSNKE----------VITVEDTVIALGSIAKNYLMQFDIKKLAVTGSS 110

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +      +    G          +N +  P       AL+         
Sbjct: 111 GKTTTKDMLYYVFNEHFSTHRTDGN--------YNNEIGLP-----LTALNIDKGYEAAI 157

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +  S+ G   +    ++      TN+G  HI+  ++Q+  F A        L  +   
Sbjct: 158 FEMGMSALGEIDYLAQIVRPNIAIITNIGSCHIEILKSQENIFKA-KMEISNYLNNDDYL 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  DD Y   + +  +         G     +      A+  + +  ++  G +  F  
Sbjct: 217 IVNGDDKYLTSLSENEYKFNLIKYGFGE-ECQLRASDYKAVDGQSEFWVTGMGINRRFTL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G   V NAL A    +   I +  +   L K      R + +  N+    I   Y  
Sbjct: 276 PAIGLHNVSNALSAIAAGLIYKIPTEKIQAGLMKFQPSKLRMQILEKNNIK-YINDSYNA 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              S+E ++ +  +   GR I + G     G+        +G++A +  D+         
Sbjct: 335 NPESMEAVITSFESYARGRKIAILGDMLELGEFSVAAHERIGRLASEKFDLVFF------ 388

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIE----------AIRTAIEMLNKQDVLVVAGKG 468
                 I +++ H    F    N  +          AI     ++   D +++  KG
Sbjct: 389 ------IGSQMKHAFDNFSTDENTDKRKYHFIDNNIAIEEIKRIIKYGDTILL--KG 437


>gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 463

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 175/475 (36%), Gaps = 43/475 (9%)

Query: 1   MKLQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L      D  +++         +  +  +  VS+DSR ++AG +FV + G + DGH F
Sbjct: 1   MRL------DLTQIMTITGGDLTPERADGVVTGVSTDSRSLRAGDLFVPLRGPRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I QA+  GA A +                  P++ V +T + L   A+ +       ++A
Sbjct: 55  IAQAVQSGAVACLSE--------EVIAGLPVPVIRVTDTLRALGDLAAAVRQAFDGPVVA 106

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++    +  I    G      G          +N +  P            + 
Sbjct: 107 VTGSSGKTTTKEMLAGILALRGEGLKTEGN--------FNNLIGLP-----HTLFRLEAD 153

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  S+ G      +  +   G  TN+G  H++     Q    AK  LF   LP
Sbjct: 154 HHWAVLELGMSARGEIARLAEISRPDIGVITNVGPAHLETLHNLQGVARAKGELFAA-LP 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+I  DD    ++                    +  + +    +     + + G+ 
Sbjct: 213 AGGTAVINGDDPRVLQLPVANGVRRLIYGCGSDAE--VRAEDIAVDGHGTHFCLLLAGES 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +     +PG + V+NAL AA    A+ +  A ++E LE      GR       S    + 
Sbjct: 271 WPVHLSVPGRYNVHNALAAAAAAHALKVGGAQIVEGLEAFRSCAGRMAVAELASGATLLE 330

Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
             Y     +++  L  +  +  SGR I V G     GD         G  A    D+ I+
Sbjct: 331 DFYNANPLAVKAALSALDEMPGSGRRIAVLGDMLELGDAASEMHRQTGLDASKCVDLLIL 390

Query: 416 TDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  R+ED      +   G+P        +  EA++    +L   D ++V  KG
Sbjct: 391 LGE--RAEDTAAGARQ--GGMPPQSVWVVKSHDEAVQLLAGILRPGDRVLV--KG 439


>gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
 gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
          Length = 468

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 99/455 (21%), Positives = 186/455 (40%), Gaps = 28/455 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            I+ V+ DSR + AG  FVAI G ++DG+ +I  A+ QGAE +        ++       
Sbjct: 6   NISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVVYTEREIDHRE------- 58

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              ++ VDN RK L+  A+++Y    E   ++ VTGT+GK++    ++++    G ++  
Sbjct: 59  -VQVVKVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGL 117

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           IG          ++  LTTP    +   +  +    V   ++E SSHG+  HR++G+   
Sbjct: 118 IGTVKIKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFD 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
              +TNL +DH+D H+  + Y  A  +   +   +ES A+I  DD Y+  +M        
Sbjct: 178 IVVYTNLTKDHLDLHEDFEDYL-ATKKELFKQAGEESTALINLDDEYADRIMSGLSAEVI 236

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                      +      A  ++ ++  S    + F+    L G   +YNAL AA + + 
Sbjct: 237 TYGFSDRADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAVGLI 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    +   L++ +    R E          I  D AH   +   + + I+ +   R+
Sbjct: 297 YGLSVEEIKAQLKEFNPFFRRLEV--IYDDKFTIIDDCAHNPGNYRAVFETIKELDYDRL 354

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTD--------DNPRSEDPEKIRAE 431
            ++    G+R         +I              +T         D    E+ E   + 
Sbjct: 355 YIINAIRGNRGITVSRENAEIISKYIPDLNLSKLYITSCEKLANKYDVVSDEEREVFLST 414

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +      F         +   ++ +   D++++ G
Sbjct: 415 LCDSGLEFEYFDYLHPCLNQTLKQVKSNDLIILLG 449


>gi|213691785|ref|YP_002322371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523246|gb|ACJ51993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457878|dbj|BAJ68499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 517

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 87/520 (16%), Positives = 176/520 (33%), Gaps = 41/520 (7%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++  L+ +     +       +   +     ++ D+R +  G + +   G +     ++
Sbjct: 12  LKEHHLLREIIQGDVWTDDPARIASTDEPFAGITYDTRKVTPGTL-LCCKG-RFK-AEYL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 G  A V  + YS    +       P L+V++ RK +SL ++  YG +P+N L V
Sbjct: 69  NGIDEAGLAAYVAETEYSAATAA-------PGLIVNDARKAMSLLSAAFYG-YPQNELTV 120

Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            G +G     +             G  +                ++ LTTP  +   + +
Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +  G+ ++ +E SS      R+ G+     +F N+  DHI      +          
Sbjct: 181 REAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPI---EHPTFEDYLYC 237

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQ 290
           +  +   + +++   D+   ++++    A     +                V    +   
Sbjct: 238 KRQIIANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAH 297

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRF 346
            +  +   D             +N L AA                   H  +   + GR 
Sbjct: 298 ASFHIADGDQTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRM 357

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
           E            VDYAH   S+  +L  +       + RI +V G  G++   +R  + 
Sbjct: 358 EQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIV 417

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EM 455
           + A +     I T ++  +E    I  E+   I           +R  AI  AI      
Sbjct: 418 EAAENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAH 477

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            ++ ++L++ GKG+E      +       D  ++  + GL
Sbjct: 478 ADRFNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL 517


>gi|227497876|ref|ZP_03928059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832708|gb|EEH65091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 522

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 182/492 (36%), Gaps = 30/492 (6%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + P    E  ++ V  D+R I  G + V + G +     ++  A  QG  A V    YS 
Sbjct: 44  VDPDHLPELWLSSVVYDTRMITPGALLV-VKG-RFK-EDYLLPAQEQGMVAYVAEREYSS 100

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-- 137
                   +  P L+V +  + +SL A+ LYG HPE  L + G +G     +    +   
Sbjct: 101 L-------TTCPGLIVTDALEAMSLLAAELYG-HPERELTIVGITGTKGKTTTAHLVHAV 152

Query: 138 --QRSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             Q +G  S                   LTTP      + +      G+TH+ +E SS  
Sbjct: 153 LSQVTGGRSAMFSSNHLCLDGRTFTPAVLTTPESADSLRMMRQALDAGMTHLVMEVSSQA 212

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               R+ G+    G F N+G+DHI   +    + +      E +       +    D + 
Sbjct: 213 YKLKRVFGLTFDVGVFLNIGQDHISLVEHP-TFEDYFFCKRELIRHSRQLVLNADTDYHG 271

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               +        +      G  I  ++      +          D      L G F   
Sbjct: 272 LLTEEARLAGARTLTVSREDGDLILTQEGKGFTLRYHGQEVAGSADQPMRLRLAGAFNQD 331

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A  + +++G  +        +   V GR E +  ++ G   YVD+AH   S   +L
Sbjct: 332 NAAAAVAVALSLGSPAGSPQLRALEQVQVSGRMERL-VSADGVVGYVDFAHNHLSTSSLL 390

Query: 374 KNIRTITSG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  +      RII+V G  G +   +R  +   A    D  I T+D+   E+  +I  
Sbjct: 391 DEVERVYGRENPRIILVSGSTGGKAVNRRQGIVTAANGRVDSFIFTEDDQDRENATQIAR 450

Query: 431 EIIHGIPGFI----EKGNRIEAIRTAIEMLN--KQ--DVLVVAGKGHETVHIVTNGEKKM 482
           ++   +            R +AI  A+          +V++V GKG E  ++V   ++  
Sbjct: 451 QMRGYVTDTEASTQIVMPRAKAIEAAVGQAREYPGRRNVILVIGKGDEVYNVVNGVKQPY 510

Query: 483 SVDCDIIREILG 494
             D  ++R +LG
Sbjct: 511 EGDAVVLRRLLG 522


>gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
 gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
          Length = 482

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 166/460 (36%), Gaps = 29/460 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+P  +A+GA A++
Sbjct: 13  DAAAWMAGAHLVGPDAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVARGAAAVL 72

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS   +     A   S   +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 73  VSRPLAG----ALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 128

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +  R+     ++     +++           P+ L +  +      +  + +  +  
Sbjct: 129 ISAVFARAVGEEARLATAGNLNNDI-------GLPLTLFRLHAQHR---LAVLELGMNHP 178

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +       N  R+H ++  + +A       +   L               
Sbjct: 179 GETEVLATIAQPTVALINNAQREHQEFMVSVEAVAIEHAAVLAALPADGVAVFPRDAANG 238

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +        AG R +             V    + Q + +      F F  PL G    
Sbjct: 239 GEYAPLWRAAAGTRRVLDFGIEGGAVSATVTDTADGQHIDVHAPDLRFSFTLPLLGVHNA 298

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A    +A GI   ++ + L     V GR +       G  +   Y    +S+   
Sbjct: 299 RNALAATACSLAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRAA 358

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429
           +  + T+ + R +V+   G  G +       +G  A     D  + T      E    + 
Sbjct: 359 IDALATLPAPRWLVLGDMGEVGTQGPAFHQEIGAYARERGIDAVLAT-----GELARHMV 413

Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                G   F       EA I   +  +     ++V  KG
Sbjct: 414 DAFGSGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447


>gi|298253385|ref|ZP_06977177.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
 gi|297532780|gb|EFH71666.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
          Length = 596

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/549 (16%), Positives = 167/549 (30%), Gaps = 83/549 (15%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
            FP    +      + D+R I  G +   I GN +    ++  A  +G  A V   +Y+ 
Sbjct: 58  YFPNIDADECFTNATYDTRDITLGTLLF-IKGNFK--SEYLLDADNKGLAAYVAEQSYAQ 114

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              +         L+V + +K +S+ A+  +G   E +  +  T  K    +        
Sbjct: 115 YTKAVG-------LIVTDAKKAMSVLAAAFFGNPQEKLTIIGITGTKGKTTTAYFTHAIL 167

Query: 140 SGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           +  S  +    S+           ++ LTTP      K +      G+ ++ +E SS   
Sbjct: 168 NSHSHGKAALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVSSQAY 227

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQ------------------------------- 223
             +R+ G+K    +F N+  DHI   +                                 
Sbjct: 228 KVNRVYGLKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLL 287

Query: 224 ----------------------QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                                 +          +      +      DD Y++ +     
Sbjct: 288 LQDAERNNVLVTTFARIKKDEIEGAACENNNFDDLDDDCINYCAPANDDDYTELLTPDYI 347

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAG 320
                             +      N  +  +      +F         ++   A +A  
Sbjct: 348 AMPVENSESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIA 407

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + I  D+ L   H  +   + GR E            VDYAH   S + +L  +    
Sbjct: 408 GELGINQDTDLHALHAIENVKISGRMEVFKDTHSNMIAVVDYAHNYISTKSVLDFVEERY 467

Query: 381 SG---RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
                RI ++ G  GD+   +R  + + A +  +  I T ++  +ED   I  ++   + 
Sbjct: 468 GKFNPRITLITGSTGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYVT 527

Query: 438 GF----IEKGNRIEAIRTAIEMLNKQD-------VLVVAGKGHETVHIVTNGEKKMSVDC 486
                     +R EAI  A       +       +L+  GKG E              D 
Sbjct: 528 NTNVSSRIIIDRAEAIEYAYNDAANSEQKNGRLNILLAIGKGDERWIKNKRKHVPYEGDS 587

Query: 487 DIIREILGL 495
            +I+ + GL
Sbjct: 588 FVIKRLFGL 596


>gi|312132521|ref|YP_003999860.1| mure1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773455|gb|ADQ02943.1| MurE1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 517

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/517 (17%), Positives = 172/517 (33%), Gaps = 35/517 (6%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++  L+ +     +       +   +     ++ D+R +  G + +   G +     ++
Sbjct: 12  LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTL-LCCKG-RFK-AEYL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 G  A V  + YS         + TP L+V++ RK +SL ++  YG +P+N L V
Sbjct: 69  NGIDEAGLAAYVAETEYSA-------ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTV 120

Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            G +G     +             G  +                ++ LTTP  +   + +
Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +  G+ ++ +E SS      R+ G+     +F N+  DHI   +          +  
Sbjct: 181 REAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQ 240

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TI 293
                K       +  A        A   G    ++           V A     +  + 
Sbjct: 241 IIANAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPEHASF 300

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFV 349
            +   D             +N L AA                   H  +   + GR E  
Sbjct: 301 HIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRMEQF 360

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     VDYAH   S+  +L  +       + RI +V G  G++   +R  + + A
Sbjct: 361 RDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEAA 420

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLNK 458
            +     I T ++  +E    I  E+   I           +R  AI  AI       ++
Sbjct: 421 ENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHADR 480

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            ++L++ GKG+E      +       D  ++  + GL
Sbjct: 481 FNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL 517


>gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
 gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
          Length = 462

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/486 (18%), Positives = 174/486 (35%), Gaps = 44/486 (9%)

Query: 1   MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK   ++++I     E +             +I  VS+DSR I  G +FV + G   DGH
Sbjct: 1   MKALTIKEVIKYTSGEYLG-------NQFNIQITGVSTDSRTINKGELFVPLTGPNFDGH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            FI +A  +GA AI+       +  +  I++   I+ VDN +  L   ++          
Sbjct: 54  DFIERAFEKGAAAILCDKNKRSKVDNLPIKN---IIFVDNPQSALLSLSAYYRRLFDIPF 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK++      +I           G  +               P+ +       
Sbjct: 111 VAITGSVGKTTTKEMTAEILNMRFKVLKTSGNLN----------NEIGLPLTIF---RLE 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V  V +  S+ G        ++      TN+G  HI+   ++Q    AKM + E L
Sbjct: 158 EGYQVGVVELGMSALGEISRMASVVRPKIAVITNIGIAHIEKLGSKQNIARAKMEILEPL 217

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVE 296
              +   +          +         + +  G +   I  + + +    + +  I   
Sbjct: 218 GENDLAVLNGDCQE----LWDARKTIVPKTVFFGQERGDIKARNIKSNSTNELEFDIYGC 273

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F   LPG   V NAL A  +   +G+    + +    L +   R +F  +     
Sbjct: 274 YGEMTFKALLPGIHNVNNALAAIAVGFEMGLTKEEIQQGFLNLKLPEMRLQFKKSYFGAD 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLADI 412
            I   Y    +S++  L  ++  + G+   V        GD  +     +GK A + ADI
Sbjct: 334 IIDDAYNANPDSMKSALDFLQQYSYGKKRAVILGDMLELGDLSEKAHFEIGKYAAERADI 393

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVV-AGKG 468
            I   +       +  +   + G              EA+    +++   D++++ A +G
Sbjct: 394 FIAVGNY-----AQSFKKGALQGHLDSRYIHTFLTVKEAVGEIKKLVEDCDIILIKASRG 448

Query: 469 HETVHI 474
            +   I
Sbjct: 449 MKMEQI 454


>gi|322691437|ref|YP_004221007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456293|dbj|BAJ66915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 517

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 94/518 (18%), Positives = 180/518 (34%), Gaps = 37/518 (7%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++  L+ +     +       +   +     ++ D+R +  G + +   G +     ++
Sbjct: 12  LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTL-LCCKG-RFK-AEYL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 G  A V  + YS    +       P L+V++ RK +SL ++  YG +P+N L V
Sbjct: 69  NGIDEAGLAAYVAETEYSAATAA-------PGLIVNDARKAMSLLSAAFYG-YPQNELTV 120

Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            G +G     +             G  +                ++ LTTP  +   + +
Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMR 232
              +  G+ ++ +E SS      R+ G+     +F N+  DHI    H T + Y   K +
Sbjct: 181 REAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQ 240

Query: 233 LFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +          A     D      +   +     A     + G     +      A  + 
Sbjct: 241 IIANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASF 300

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                     D+         +    A +A      + +D A  L  +E + +  GR E 
Sbjct: 301 HIADGDQTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDADALHAIESVRI-AGRMEQ 359

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKI 405
                      VDYAH   S+  +L  +       + RI +V G  G++   +R  + + 
Sbjct: 360 FRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIVEA 419

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EMLN 457
           A +     I T ++  +E    I  E+   I           +R  AI  AI       +
Sbjct: 420 AENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAHAD 479

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           + ++L++ GKG+E      +       D  ++  + GL
Sbjct: 480 RFNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL 517


>gi|23335414|ref|ZP_00120650.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|23465917|ref|NP_696520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum NCC2705]
 gi|189439084|ref|YP_001954165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum DJO10A]
 gi|227547592|ref|ZP_03977641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317483518|ref|ZP_07942503.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689471|ref|YP_004209205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|46577072|sp|Q8G4M3|MURE_BIFLO RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|23326625|gb|AAN25156.1| MurE [Bifidobacterium longum NCC2705]
 gi|189427519|gb|ACD97667.1| UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211847|gb|EEI79743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291516694|emb|CBK70310.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium longum
           subsp. longum F8]
 gi|316915042|gb|EFV36479.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320460807|dbj|BAJ71427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 517

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/521 (17%), Positives = 184/521 (35%), Gaps = 43/521 (8%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++  L+ +     +       +   +     ++ D+R +  G + +   G  +    ++
Sbjct: 12  LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTL-LCCKGQFK--AEYL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 G  A V  + YS         + TP L+V++ RK +SL ++  YG +P+N L V
Sbjct: 69  NGIDEAGLAAYVAETEYSA-------ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTV 120

Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            G +G     +             G  +                ++ LTTP  +   + +
Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +  G+ ++ +E SS      R+ G+     +F N+  DHI      +          
Sbjct: 181 REAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPI---EHPTFEDYLYC 237

Query: 235 EELLPKESPAIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAI 285
           +  +   + +++   D+   ++++             A     + G     +      A 
Sbjct: 238 KRQIIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAH 297

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +           D+         +    A +A    + + +D A  L  +E + +  GR
Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRI-AGR 356

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIM 402
            E            VDYAH   S+  +L  +       + RI +V G  G++   +R  +
Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----E 454
            + A +     I T ++  +E    I  E+   I           +R+ AI  AI     
Sbjct: 417 VEAAENRIANFIFTAEDTDTEPIIDICMEMQGYITNKDVVSTVISDRLTAITNAIYDARA 476

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             ++ ++L++ GKG+E              D  ++  + GL
Sbjct: 477 HADRFNILLIIGKGNERWIKDHRKHVPFDGDDHVVERMFGL 517


>gi|296454397|ref|YP_003661540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183828|gb|ADH00710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 517

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 87/520 (16%), Positives = 176/520 (33%), Gaps = 41/520 (7%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++  L+ +     +       +   +     ++ D+R +  G + +   G +     ++
Sbjct: 12  LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTL-LCCKG-RFK-AEYL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 G  A V  + YS    +       P L+V++ RK +SL ++  YG +P+N L V
Sbjct: 69  NGIDEAGLAAYVAETEYSAATAA-------PGLIVNDARKAMSLLSAAFYG-YPQNELTV 120

Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            G +G     +             G  +                ++ LTTP  +   + +
Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +  G+ ++ +E SS      R+ G+     +F N+  DHI      +          
Sbjct: 181 REAADNGMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPI---EHPTFEDYLYC 237

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----VGYQGKFIHLKKVCAIHNKQQ 290
           +  +   + +++   D+   ++++    A     +                V    +   
Sbjct: 238 KRQIIANAKSLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAH 297

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRF 346
            +  +   D             +N L AA                   H  +   + GR 
Sbjct: 298 ASFHIADGDQTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRM 357

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMG 403
           E            VDYAH   S+  +L  +       + RI +V G  G++   +R  + 
Sbjct: 358 EQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEIV 417

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----EM 455
           + A +     I T ++  +E    I  E+   I           +R  AI  AI      
Sbjct: 418 EAAENRIANFIFTAEDTDTEPFIDICMEMQGYITNKDVASTVISDRPTAITNAIYDARAH 477

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
            ++ ++L++ GKG+E      +       D  ++  + GL
Sbjct: 478 ADRFNILLIIGKGNERWIKDHHKHVPFDGDDHVVERMFGL 517


>gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 454

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 150/460 (32%), Gaps = 36/460 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L+       + +   V++DSR ++ G +FVA+ G+  DGH +  +A+  GA  +VVS   
Sbjct: 8   LAATKAVCADFEFTGVTTDSRAVKPGELFVALKGDNFDGHDYCAKAVELGAAGVVVSHEV 67

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQI 136
           S       + +   + +V++T       A      K    + A+TG++GK+S    +   
Sbjct: 68  S------GLPAGVAVFMVEDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTSTKDLLAAC 121

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                      G  +      +      P                +  V +     G   
Sbjct: 122 LSCKYNVVKTQGNFNNEIGLPKTLLSIKPD-------------TDIAVVEMGMRGLGQIA 168

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +  +G  TN+G  H++   + +    A        LP++  A++  D+ Y    
Sbjct: 169 ELCRIAEPDSGLITNVGETHMELLGSMENIGKA-KSEIVLNLPEDGFAVLNGDNEYVLPA 227

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             +                                T    G+  +    L GE  VYNAL
Sbjct: 228 ADKTKAKVVYFGLGENCDFRGSDIVTSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNAL 287

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A       G+  A+  + L    +   R E V        I   Y  +  S+E  LK +
Sbjct: 288 SAIAGAFCYGVPMAVSAQALATARLTGSRQEIVYIGDI-TFINDAYNASPASMEAALKTL 346

Query: 377 RT-----ITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
                      R I V       GD  +     +G+ A++     ++T           I
Sbjct: 347 AEAKKAAHGKARTIAVLADMLELGDISEDAHRRVGRWAVENGVDFVLT----YGPQAAYI 402

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E            +R EA      M +  D++++  KG
Sbjct: 403 ADEAAELGGKSKHCADRQEAADALRLMASAGDIILL--KG 440


>gi|311115069|ref|YP_003986290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310946563|gb|ADP39267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 597

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 94/530 (17%), Positives = 169/530 (31%), Gaps = 76/530 (14%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N ++ DSR I+   +   I GN +    ++  A   G    V   +Y+         +N 
Sbjct: 78  NHITYDSRDIKKNTLLF-IKGNFK--PEYLKDADKNGLTTYVAEQSYAD-------YTNA 127

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+V + RK +SL +S  +G   E +  +  T  K    +        +  S  +    
Sbjct: 128 VGLIVTDVRKAMSLLSSEFFGNPQERLRVIGITGTKGKTTTAYFTHAILNEHSEGKAALF 187

Query: 151 ST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           S+           ++ LTTP  +   + +S     G+ ++ +E SS      R+ G+   
Sbjct: 188 SSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYKVERVYGLHFN 247

Query: 206 AGSFTNLGRDHIDY--HQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKR 259
             +F N+  DHI    H T + Y   K ++ +        A     D        E +  
Sbjct: 248 VAAFLNISPDHISPIEHPTFEDYLYCKRQIVKNTDALILNADCAHADLILQDAQNEYVDV 307

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +  R   +G            +  +  + +       +     +P         VA 
Sbjct: 308 TTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKYVAMPVSSDAQEHYVAI 367

Query: 320 G-----------------------------------------LCIAIGIDSALVLEHLEK 338
                                                       + I  ++     H  +
Sbjct: 368 LDNESKKNKKQFVPNYTTIDKFNLKIAGDFNYENATAAIAIANALGINENTDQKALHAIE 427

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRD 395
              + GR E            VDYAH   S + ++  +         RI +V G  GD+ 
Sbjct: 428 NVQISGRMEVFKDTKSNTVAIVDYAHNYISTKSVVDFVYDKYGNNDLRITLVTGSTGDKA 487

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRT 451
             +R  + + A D  +  + T ++   ED   I   +   +           NR EAI  
Sbjct: 488 VDRRKEIVQAAQDRINQFVFTQEDTNVEDEMDICKYMQSCVTNPNVESRIIINRAEAIEY 547

Query: 452 AIEMLNKQ-------DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
           ++E   K        ++++  GKG E    V N       D  II+ +  
Sbjct: 548 SVEEARKDARENNRLNIILAIGKGDERWIKVHNKHVPYEGDSFIIKRLFS 597


>gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
          Length = 450

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 151/399 (37%), Gaps = 25/399 (6%)

Query: 13  ELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+N +L          +I EV+ D+R + AG +FVA+ G + DGH F   A+  GA A+
Sbjct: 3   ELLNAELIATDKGGNHLEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAVTAGAGAL 62

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS           +    P LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV  
Sbjct: 63  LVSK---------RLLVGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKE 113

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               I ++ G   +  G  +            TP                   + + A+ 
Sbjct: 114 MTAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPE-------------YDFAVIELGANH 160

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G   +  D  +  +    NL   H++   +      AK  +F  L    +  I    + 
Sbjct: 161 VGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSND 220

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +        +    R      +    +   V         T+           PLPG   
Sbjct: 221 WPHWQETLHNKRVWRFAPQAAEDIDFYATDVQITPQATHFTLHSPFGTVAIELPLPGRHN 280

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N L AA L +++G D A V + L +L  VPGR   +   +    +   Y     S+  
Sbjct: 281 IANGLAAAALAMSVGADLAAVRQGLMQLQAVPGRLFPIQLAAGKLLLDDTYNANVGSMTA 340

Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
             + +  +   R++VV   G  GD        +G+ A  
Sbjct: 341 AAQVLAEMPGYRVMVVGDMGELGDTAIDCHRQVGEAAKQ 379


>gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 457

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 95/486 (19%), Positives = 181/486 (37%), Gaps = 47/486 (9%)

Query: 1   MKL--QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M L  +++I     +L++             I+ +S+DSR I+ G +F+ + G   +G +
Sbjct: 1   MILSVKEIIDATSGKLLSG-------DINSTISGISTDSRTIKEGELFIPLKGENFNGEM 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+  A+  G  A +  S       +   R N P++ VDNT++ L   A     K     +
Sbjct: 54  FVEDALKIG-SASLTES------VNNVGRYNKPVIFVDNTKEALHKIAKYYREKFQIPFI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +           G  +               P+ +        
Sbjct: 107 AVTGSNGKTTTKDMIYDVLSMKYNVLKTQGNFN----------NEIGLPLTIF---RLNK 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              +  V +  S  G +  RL  I       +TN+G  HI+   +++    AK  L E  
Sbjct: 154 KHDMAIVEMGMSGFG-EIRRLKNIADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENF 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               +  +   DD     ++K  +  G + ++ G     +    +       +  + ++G
Sbjct: 213 KEGYTVILNADDD----MLVKLTNKKGPQYITYGIDNGDVKAFDIEYKEESVKYKVIIDG 268

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    +PG+  VYN+L A  + I  G++   + + L +      R   +  +     
Sbjct: 269 YMMDVELNVPGKHNVYNSLAAICIGIKFGVNKEDMRKALAEFQPSAMRLNILDVSGIKVI 328

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAI 414
               Y     S++  L  ++     R + V G     G+        +GK   D     +
Sbjct: 329 NDA-YNANPGSMKAALSVLKEYKDRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENIDVL 387

Query: 415 VTDDNPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHE 470
           +T      E   KI    I  G+     +   N +EA     +++   DV ++ G +G +
Sbjct: 388 ITV----GEFASKIAEGAIKSGMDVENVMICKNNVEAYEKIKKIMRNNDVFLIKGSRGMK 443

Query: 471 TVHIVT 476
              IV 
Sbjct: 444 MEEIVK 449


>gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
 gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
          Length = 461

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 152/452 (33%), Gaps = 33/452 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
                 ++  VS++SR ++ G +FV IVG K D H FIP A+  GA A            
Sbjct: 19  KGNPNAEVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMALDTGAAACFTQQEPE---- 74

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 +  ++ V +T+K L  FA+    +    ++ VTG+ GKSS    +     +   
Sbjct: 75  EGFKYLDGAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKSSTKEMIAAALSQGKR 134

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  ++              P+ +        +  +  + +  S+ G +  RL  I
Sbjct: 135 VHKTAGNYNSQ----------IGLPLTVFGLDH---THEIAVIEMGMSNFG-EMERLSAI 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                +               Q    A+     + + ++    +  DD   +++ +    
Sbjct: 181 ASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRE--SY 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  V              +  + +  +  +         + P  G   V NAL A  + 
Sbjct: 239 TGKIVWYGMESDCDYRAVNIDTVKDCTRFELHAPFGAHKIMIPALGLHNVSNALAAIAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
              G+    +   L     +  R +    +     I   Y  + +S++  +  +  +  +
Sbjct: 299 YDQGLTLDDIRCGLLTYEGLAMRQQIHELDKI-TVIDDSYNASPDSIKSGIGVLMAVKST 357

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           G+ I V       G+R       +G  A      A++T       + EKI          
Sbjct: 358 GKKIAVLADMLELGERSAQAHLELGAYAAASGVDAVLTV----GREAEKIAEGAAEESRK 413

Query: 439 FIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    G   EA     ++LN  D ++V  KG
Sbjct: 414 ILVKACGTNDEAFAELEKILNDGDCVLV--KG 443


>gi|215427537|ref|ZP_03425456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T92]
          Length = 125

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 52/111 (46%), Positives = 65/111 (58%), Gaps = 7/111 (6%)

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
            R+ VVFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G      
Sbjct: 2   RRLAVVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGG 61

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
               +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 62  DAQVVEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 111


>gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfotomaculum reducens MI-1]
 gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfotomaculum reducens MI-1]
          Length = 457

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 100/482 (20%), Positives = 176/482 (36%), Gaps = 44/482 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E+   +    +Q     KI  + +DSR  +   +FVA+ G + DGH F  +AI
Sbjct: 1   MLTYTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            QGA A++VS           I    P+++V NT + L   AS    +    ++AVTG++
Sbjct: 61  EQGASALLVSREI------TGIAPQIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    +  +      +    G  +                              V  
Sbjct: 115 GKTSTKDMIAAVLNTRFKTLKTEGNFNNELGLPLTLLGLGEE-------------HQVAV 161

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           V +     G +   L G+ K      TN+G  H++   + +    A        + ++  
Sbjct: 162 VEMGMRGPG-EIDFLAGLAKPTGAVITNIGEAHLERLGSVENIALA-KTEVLAHIGRDGF 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI+ AD  Y  E+ +            G     +    +       +  IS  G   +  
Sbjct: 220 AILNADSPYLGELARNCQGKVWLYSLEGIGD--LQASNIRPEGTGVRFNISSPGGKEEIY 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   V N+L A G+ + +G+    + + L +L +   R + + +N R   I   Y 
Sbjct: 278 LPVPGSHNVMNSLAAIGVGLQLGLQLEEIAQGLAQLCLTHSRLQILSSNGR-VIINDTYN 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDL-ADIAIVTDDN 419
              +S +  LK ++     R I V G     GD +Q     +G+ A  +  D  I     
Sbjct: 337 ANPSSTKAALKVLKETARSRKIAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLI----- 391

Query: 420 PRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG----HETV 472
                 + I    + G        +     EA+    ++L   D ++V  KG    H   
Sbjct: 392 SVGNLAQWITQGGLKGGLSQERVFQCQENSEAVEVLGKILKPGDTILV--KGSRGMHMEY 449

Query: 473 HI 474
            +
Sbjct: 450 IV 451


>gi|55163150|emb|CAH57483.1| putative UDP-MurNac-tripeptide synthetase [Actinoplanes
           teichomyceticus]
          Length = 298

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 140/303 (46%), Gaps = 18/303 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I+  AG +TN G+DH+D+H T + YF AK RLF+         ++  DD     ++    
Sbjct: 1   IRFAAGGYTNFGQDHLDFHPTTEEYFAAKARLFDGRTE---VGVLNHDDPAVMSLLA--- 54

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAG 320
                  + G          V      Q+      G         LPG   V NAL+A  
Sbjct: 55  PGMVTYSASGNTEATWWASDVRPSDFGQRFVAHGPGGITVETGVALPGLHNVANALLALA 114

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL---EMILKNIR 377
           L +A+GID  +    + +   VPGR E V          VDYAH  N++      L+ + 
Sbjct: 115 LLVAVGIDPQVAGTGVRECRGVPGRLEQVA-APGEILGVVDYAHKPNAIVAALAALRELA 173

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           +   GR++ V G GGDRD+GKRP+MG+ A   AD+ I+TDDNPR+EDP  +RA +  G  
Sbjct: 174 SARGGRLVCVLGAGGDRDRGKRPLMGEAAARGADLVIITDDNPRTEDPAAVRAAVRRGAE 233

Query: 438 ------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
                   +E   R  AI  A+ +    DV+ V GKG+E    V NG+     D   +  
Sbjct: 234 EAHTAAKVLEVAGRRAAIDEAVRLAAAGDVIAVLGKGNEQGQEV-NGQVLPFDDRIELAA 292

Query: 492 ILG 494
            LG
Sbjct: 293 ALG 295


>gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 458

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 165/469 (35%), Gaps = 37/469 (7%)

Query: 8   YKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
                E+   +    ++   +R   +V +DSR I  G +FVA+ G + D H F+ QA+  
Sbjct: 3   KMTLGEIAGAIKARMVKGNVDRVYTQVCTDSRQIVPGSLFVALKGERFDAHDFVEQALQL 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  ++VS              +  IL+VD+T   L   A     K    ++AVTG++GK
Sbjct: 63  GAHGVIVSR-------MQHDLPDGDILLVDDTLTALQQLARYNRKKFSGPVVAVTGSNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  + +   L    +G  +               P+ L        S G   V 
Sbjct: 116 TTTKDMISALLETKYLVLKTLGNFN----------NEIGLPLTLLG---LDESHGAVVVE 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G            AG  TN+G  H++   T +    AK  L   +       + 
Sbjct: 163 MGMRGLGEIDFLARIACPTAGVITNIGETHLERLGTVENIARAKTELLPHIPVGGYAVL- 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D   +        A      + +          C +      T+  +     F  P+
Sbjct: 222 -NGDDPWQRKYAHLTRAKVIFYGMDHSNHVYADNIKCNMGAGASFTVIRDKIAKVFHLPV 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   +YNAL A  + +  G+   + +E L+ + +   R + +  N         Y    
Sbjct: 281 PGRHNIYNALAAITVGLQEGLSWEMCMEGLQNVVLSGMRLQIIDCNGLKIINDT-YNANP 339

Query: 367 NSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            S +  ++ +  +   G+ + V G     G R       +G+   +L    +VT      
Sbjct: 340 ASSKAAVRILAEMPCAGKKVAVLGDMYELGQRTVQGHREVGETVQNLKIDILVTV----G 395

Query: 423 EDPEKIRAEII-HGIPGFIEKGNR--IEAIRTAIEMLNKQDVLVVAGKG 468
           E    I       G+       +R   EA+     +L   D+++V  KG
Sbjct: 396 ELALHIAEAAKAAGMDRKNIYVSRNNNEALEILNNILKAGDLVLV--KG 442


>gi|212715570|ref|ZP_03323698.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660937|gb|EEB21512.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
          Length = 517

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/511 (16%), Positives = 175/511 (34%), Gaps = 30/511 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+ +        L    +   ++    ++ D+R + +G + +   G +     ++     
Sbjct: 17  LLREIIQGDAWTLDAQTINGFDKPFGSITYDTRQVVSGAL-LCCKG-RFK-AEYLDGIDD 73

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G  A V  + +S         +  P L+V++ RK +SL ++  YG     +  +  T  
Sbjct: 74  RGLAAYVAENDFSA-------ATKAPGLIVNDARKAMSLLSAAFYGYPQNQLKVIGITGT 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K    +        +G S  +    S+           ++ LTTP  +   + +   +  
Sbjct: 127 KGKTTTAYLTQAMLNGCSDGKCALFSSADNCLDGHTYVESDLTTPESMDAFRMMREAADN 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+ ++ +E SS      R+ G+     +F N+  DHI   +          +       +
Sbjct: 187 GMKYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQIVKNCR 246

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                     A          +      ++G            +  + +        +  
Sbjct: 247 SLVLGTACAHADLIRQDAAIADIPVTTFALGEASAADVTAWPESADHSRFAIAVEGEQIG 306

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                L G+F   NA  A  +  A+G D     A       +   + GR E         
Sbjct: 307 SLSLQLDGDFNYANAAAAIAIAHAVGFDFHETAAKEALRNMEPVRIAGRMEHFHDTKSNT 366

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              VDYAH   S+  +L  +          + +V G  G++   +R  + + A +  +  
Sbjct: 367 IAIVDYAHNYASVTALLDYVDQRYGKDDPEVTLVTGSAGNKAYDRRSEIVRAAQNRVNHL 426

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRT--AIEMLNKQ--DVLVVA 465
           I+T ++   E  E +   ++  +           +R EA+ +  AI+  N     ++++ 
Sbjct: 427 ILTFEDTDDEPVEHVCQNMLDSVTNPDLDARIILDRTEAVESTVAIDRKNPNRLHIILII 486

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GKG+E              D  I+  I GL+
Sbjct: 487 GKGNERWFKNHGKHIPFEGDDHIVERIFGLV 517


>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
           propionicus DSM 2379]
 gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter propionicus DSM 2379]
          Length = 469

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 93/464 (20%), Positives = 168/464 (36%), Gaps = 34/464 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+    +      R  +++ VS+DSR + AG +FV + G + DGH FIPQ  A+G  A
Sbjct: 4   IAEIAAATAGGFQGDRSARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAKGVAA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++   ++  +     I     ++ V +T   L   A+    +    ++ +TG++GK++  
Sbjct: 64  VLADQSFDGE-----IPPGLTVVRVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTK 118

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +++G      G          +N +  P            +S G   + +  S
Sbjct: 119 EMLATILEQTGPGLKTAGNL--------NNLIGLP-----QMLFRLDASHGWAVLEMGMS 165

Query: 191 SHGLDQHRLDGIKLIAGSFT-NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             G +  RL  +         N    H++   + +    AK  L    LP    AII AD
Sbjct: 166 EPG-EIDRLAEVAAPQTGIVLNACPAHLESMGSVEGVARAKGELLLR-LPAGGCAIINAD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG- 308
           D     +  +    G R L+ G     +   ++ ++    Q  +   G+    +      
Sbjct: 224 DP---LIAGQPSPPGVRRLTFGLGDADVRATEITSLGIGGQSFLLHLGEIVLPVVLWSYG 280

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              VYNAL AA     +GI + L+   LE+      RF+          I   Y     S
Sbjct: 281 RHAVYNALAAAAAAHGLGIAAELIQSGLERFRPYDKRFQLEDVGGL-VLIDDSYNANPAS 339

Query: 369 LEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +E  L  +  +  G    V        G  +      +G  A  +AD   +         
Sbjct: 340 MEAALTTLGELKGGGRAFVALGDMLEMGSNEAELHRALGVRAAAVADRLYLCGPLMAHAA 399

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              + A ++      +   +  E   + +      D ++V  KG
Sbjct: 400 VGALSAGMVE--EQVMRIPDHDEIAASILRQARPGDFVLV--KG 439


>gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 456

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 93/470 (19%), Positives = 168/470 (35%), Gaps = 37/470 (7%)

Query: 6   LIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E+               ++N + +DSR  + G IFVA+ G + DGH F  +AI
Sbjct: 1   MLTYTIKEIAAVTGGTIIQGNPAAEVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            QGA A++V+        + T+     ++ V +T + L   A+    +    ++AVTG++
Sbjct: 61  EQGATALLVTK-------TVTVPPQVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSN 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    +  +      +    G  +                      L+   +     
Sbjct: 114 GKTSTKDMIAAVLNTRYKTLKTQGNYNN-------------ELGLPLTLLALDQTHQAAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +     G         K      TN+G  H++   + Q    AK     + +  E  A
Sbjct: 161 VEMGMRGFGEIDLLARLAKPTGAVITNIGEAHLELLGSVQNIAAAKA-EVLDHIGAEGFA 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  D    +  + R           G     +  + V       +  +S  G   +   
Sbjct: 220 ILNGDSPELRNQVSRCQGQVWFYSINGQTD--LVARNVRVEGRGVRYDLSYPGGTGEIYL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG   V N++ A G+ + +GI    ++  L ++ +   R E +  N+      V Y  
Sbjct: 278 PIPGSHNVMNSMAAVGVGLRLGIPFTDIVRGLAQVELTGMRLEIIKANNMTVINDV-YNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIAL-DLADIAIVTDDNP 420
             +S +  LK +  +  GR I V G     G   +     +G+ A        +   D  
Sbjct: 337 NPSSTKAALKVLAEVAPGRKIAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLA 396

Query: 421 RSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           R      I      G+P        N   AI    +++   D ++V  KG
Sbjct: 397 RFTAQGAI----KGGLPGDRVHHCDNNKLAIEVLRQVMQPGDTILV--KG 440


>gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 461

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 186/478 (38%), Gaps = 34/478 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+  +         +     +++ I  +S+DSR ++   +F+ + G K DG  F+  A+
Sbjct: 3   ELLIAEIVRATEG-KLIKGSLKDKVI-GISTDSRKVKKDELFIPLKGEKYDGEDFVKDAM 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+A++ +   +++       +   ++ V++T + L   AS    K     +AVTG++
Sbjct: 61  TKGAKAVLTARLDNIEYLRDFPFN---VIYVNDTLEALHKIASYYRKKFNIPFVAVTGST 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + QI  +        G  +               P+ +    +  ++  +  
Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIF---NLENTHQIAV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +  S  G  +   + +K     FTN+G  HI+   +++    AK  L E+   +    
Sbjct: 165 VEMGMSGFGEIRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD     + K       +    G +   I    +       + T+  +  + +   
Sbjct: 225 LNADDD----MLSKIPLQYSSKYYRYGIKNGEIKACNIEKGEKGIKYTLKYKNLEKEIKL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   VYN+L A  + +  G+D   + E L+       R   +            Y  
Sbjct: 281 SIPGIHNVYNSLAAICVGLEFGVDVDDMAEVLKDFQPGKMRLNIIEKGDIKIIDDA-YNA 339

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             +S++  L  +R     R I V G     G+        +GK+  D     ++T  N  
Sbjct: 340 NPDSMKAALNVLRDFPGKRKIAVLGDMLELGEYSVEAHREIGKLVADSHIDILITSGN-- 397

Query: 422 SEDPEKIRAEIIH-GIP-GFIEKGNRIEAIRTAIE-MLNKQDVLVVAG-KGHETVHIV 475
               + I  E    G+    I   N  E ++  ++ ++ + D+++V G +G +   IV
Sbjct: 398 --TSKYIAEESKVCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIV 453


>gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 479

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 164/478 (34%), Gaps = 45/478 (9%)

Query: 6   LIYKDFPELINQLSIFPMQ--WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   P      + K+   V  DSR ++ G +F A+ G + DGH F  +
Sbjct: 1   MIALSLTEIAGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGERVDGHDFARK 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA A++ +      D         P +VV +    +   A  +  +    ++A+TG
Sbjct: 61  AIEAGATAVLAARPVGTADAP------VPAIVVPDVIAAMGALARAVVERLDATVVALTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G          +N +  P         +  + +  
Sbjct: 115 SAGKTSTKDLIAQLLQRRGPTVWTPGSL--------NNEIGLP-------LTAMSADEAT 159

Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELL 238
            H+ +E  + G    R          G   N+G  HI     ++    A  ++       
Sbjct: 160 LHLVLEMGARGKGHIRYLATLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPPA 219

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A++ ADD   + +M R                     ++ A   +   T+     
Sbjct: 220 EEGGVAVLNADDPLVRAMMSRTKARTVLFGEAEDADVRAGNVRL-ADGGRPAFTLHTPTG 278

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357
             +    L GE  V NAL AA +   +G+    +   L +       R E    +     
Sbjct: 279 CSEVTMRLYGEHHVSNALAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTV 338

Query: 358 IYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409
           +   Y     S+   L+ +  +       R   V G     G+    +   +G++A+ L 
Sbjct: 339 VNDAYNANPESMRAALRALVAMGAATPGRRTWAVLGQMAELGEESLAEHDAVGRLAVRLN 398

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  V        D          G      +   +   A+      L   DV++V
Sbjct: 399 VSKLVAVGGQEAAWLD----MGAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLV 452


>gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
 gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
          Length = 401

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 97/413 (23%), Positives = 163/413 (39%), Gaps = 39/413 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L  L+     E +           +  I ++   S  ++ G +FV I G   DGH +I
Sbjct: 1   MRLDQLLKHFSYESVQGSH-------DLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSA---------------YSLQDFSATIRSNTPILVVDNTRKFLSLF 105
             A+  GA A+VV  +                 ++           ++ V +TR+ L+  
Sbjct: 54  MDAVKAGAFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQI 113

Query: 106 ASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRL 162
           ++  Y    +   I+ +TGT GK++ A     I + +G  +  +G   T      +    
Sbjct: 114 SAAFYDYPAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGH 173

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           TTP    L + L+ + S G     +E SS G+   R++GI    G F N+  DHI     
Sbjct: 174 TTPESSDLQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP--- 230

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS---------VGYQ 273
            +    A+    +  L ++  A I   D  + E +   H       S          G +
Sbjct: 231 GEHASFAEYLYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQK 290

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +  +   ++   +  +        +FL  +PG F V NAL A  +     I   +V 
Sbjct: 291 ADIVAERITFSMKEGRLYSHFFTDGKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVK 350

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + L++   VPGR E V  +       VDYAH   SL  +L  +R    GR++V
Sbjct: 351 DALQR-QTVPGRCENVRIS-DKFVFLVDYAHNEMSLRNLLGTLRGFDPGRLVV 401


>gi|239621197|ref|ZP_04664228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515658|gb|EEQ55525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 517

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 183/521 (35%), Gaps = 43/521 (8%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++  L+ +     +       +   +     ++ D+R +    + +   G  +    ++
Sbjct: 12  LKEHHLLREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPDAL-LCCKGQFK--AEYL 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 G  A V  + YS         + TP L+V++ RK +SL ++  YG +P+N L V
Sbjct: 69  NGIDEAGLAAYVAETEYSA-------ATATPGLIVNDARKAMSLLSAAFYG-YPQNELTV 120

Query: 121 TGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            G +G     +             G  +                ++ LTTP  +   + +
Sbjct: 121 IGVTGTKGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMM 180

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +  G+ ++ +E SS      R+ G+     +F N+  DHI      +          
Sbjct: 181 REAADNGMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPI---EHPTFEDYLYC 237

Query: 235 EELLPKESPAIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAI 285
           +  +   + +++   D+   ++++             A     + G     +      A 
Sbjct: 238 KRQIIVNAKSLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAH 297

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +           D+         +    A +A    + + +D A  L  +E + +  GR
Sbjct: 298 ASFHIADGDQALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRI-AGR 356

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIM 402
            E            VDYAH   S+  +L  +       + RI +V G  G++   +R  +
Sbjct: 357 MEQFRDPQSNTLAIVDYAHNYASVTALLDFVYERWGEENPRITLVTGSAGNKAYDRRKEI 416

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAI----E 454
            + A +     I T ++  +E    I  E+   I           +R+ AI  AI     
Sbjct: 417 VEAAENRIANFIFTAEDTDTEPIIDICMEMQGYITNKDVVSTVISDRLTAITNAIYDARA 476

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             ++ ++L++ GKG+E              D  ++  + GL
Sbjct: 477 HADRFNILLIIGKGNERWIKDHRKHVPFDGDDHVVERMFGL 517


>gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 317

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 94/319 (29%), Positives = 142/319 (44%), Gaps = 9/319 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 5   NLSKIFAHTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 60

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 61  AYEVEGSTVLPITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 120

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 121 AQALDVLGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSH 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +       TNL RDH+DYH T +AY  AK +LF     K     +  DD +
Sbjct: 181 GLDQGRATALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKCRVINL--DDDF 238

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 239 GRELAAVKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 298

Query: 313 YNALVAAGLCIAIGIDSAL 331
            N L A G  + +      
Sbjct: 299 SNVLAAVGALLGLDYALDE 317


>gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
 gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
          Length = 461

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 186/478 (38%), Gaps = 34/478 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L+  +         +     +++ I  +S+DSR ++   +F+ + G K DG  F+  A+
Sbjct: 3   ELLIAEIVRATQG-KLIKGSLKDKII-GISTDSRKVKKDELFIPLKGEKYDGEDFVKDAM 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+A++ +   +++       +   I+ V++T + L   A     K     +AVTG++
Sbjct: 61  TKGAKAVLTARLDNIEYLKDFPFN---IIYVNDTLEALHKIAYYYRKKFNIPFVAVTGST 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + QI  +        G  +               P+ +    +  ++  +  
Sbjct: 118 GKTTTKDMIAQILSKKYKVLKTEGNFN----------NEIGLPLTIF---NLENTHQIAV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +  S  G  +   + +K     FTN+G  HI+   +++    AK  L E+   +    
Sbjct: 165 VEMGMSGFGEIRRLKNIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIV 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD     ++K       +    G +   I    +       + T+  +  + +   
Sbjct: 225 LNADDD----MLLKILQQYSSKYYRYGIKSGEIKACDIEKGEKGIEYTLKYKNLEKEIKL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   VYN+L A  + +  G+D   + E L+       R   +            Y  
Sbjct: 281 SIPGIHNVYNSLAAICVGLEFGVDVDDMAEALKDFQPGKMRLNIIEKGDIKIIDDA-YNA 339

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             +S++  L  +R     R I V G     G+        +GK+  D     ++T  N  
Sbjct: 340 NPDSMKAALNVLRDFPGKRKIAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGN-- 397

Query: 422 SEDPEKIRAEIIH-GIP-GFIEKGNRIEAIRTAIE-MLNKQDVLVVAG-KGHETVHIV 475
               + I  E    G+    I   N  E ++  ++ ++ + D+++V G +G +   IV
Sbjct: 398 --TSKYIAEESKVCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIV 453


>gi|88607959|ref|YP_506139.1| hypothetical protein NSE_0245 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600128|gb|ABD45596.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 469

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 193/442 (43%), Gaps = 15/442 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++SD + +   ++F A    KE  H  I +AI +GA +I+ +  Y  +     +  
Sbjct: 14  RIKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGARSILTNQKYEEE----CLAQ 66

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                V    ++      S ++ K P  + AVTGTSGK SV  F  Q+C  +G  +  + 
Sbjct: 67  GVNFFVHTQPQQIYHEVCSCMWKKQPAYMCAVTGTSGKRSVGHFFSQVCTLAGKKAVSLS 126

Query: 149 PTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            ++  +      Q+          +   L  L+ + + +  +  S   ++   +D + L 
Sbjct: 127 ASNEPTDALGLWQEKDHMILDAADMYSILDDLAGRRIEYCCLAISGAAIESRMIDSVNLK 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A +F+NL RD ++  +     F  K+RL  E+LP++   ++     Y+  +++  H    
Sbjct: 187 AAAFSNLLRDDLEQPEDIDKRFQMKVRLLSEVLPEDGIMVLPVASEYTTRIIQ--HCPNK 244

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +V + G     I L         Q +T+ V GK+      + G+F   N + A GL I+ 
Sbjct: 245 KVCTYGRATSDIQLISQLPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLAISC 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           GID + +      +  + G  EF+       +I  D A T + L  +L +I+       +
Sbjct: 305 GIDPSSIEHEQ--ISPLAGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDV 362

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            +V  C  + +      M KIA  + +  I T D+  S   EK R E++   P  IE  +
Sbjct: 363 TLVLRCSENYEGKNTLKMAKIAAKMVNRIIFTSDSNGSTLTEKSRRELMSCCPKAIEIED 422

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
           R +A+  AI      +++V+ G
Sbjct: 423 RKKAMEYAINNCKPSEIIVMQG 444


>gi|297742512|emb|CBI34661.3| unnamed protein product [Vitis vinifera]
          Length = 347

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 133/292 (45%), Gaps = 24/292 (8%)

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           Q    AK+        +    +   D      + +   +      ++  +   +H  K  
Sbjct: 34  QKNAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFE 93

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + QV +       +    L G   +YN L A  + IA+G     ++  +E++  VP
Sbjct: 94  LSLFETQVLVQTPKGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVP 153

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E +    +   + VDYAHT ++L  +L ++R + + RII VFGC G+ D+GKRPIM 
Sbjct: 154 GRCELI-DEEQAFGVIVDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMT 212

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT------------ 451
           KIA D +D+ I+T DNP++EDP  I  +++ G+   +    +  A               
Sbjct: 213 KIATDKSDVVILTSDNPKNEDPLDILDDMLAGVGWTMHDYLKYGANDYYPPLPNGHRLFL 272

Query: 452 ----------AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                     A+ M  + D++VVAGKGHET  I  + +K+   D +  RE L
Sbjct: 273 HDIRRVAVRAAVAMGEEGDIVVVAGKGHETYQIEGD-KKEFFDDREECREAL 323


>gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
          Length = 466

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 159/473 (33%), Gaps = 40/473 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++      L            +     V  DSR ++ G +FVA+ G + DGH F+  
Sbjct: 4   LRDVLDGTAGMLRG------SAAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVAD 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA   +V + ++ +          P++VVD+T   L   AS         + AVTG
Sbjct: 58  AVRRGAAGALVEARWAEE----LANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--SPIYLAKALSYLSSQ 180
           + GK+S    +  +  +           +T    A D     P    + L    +Y   +
Sbjct: 114 SVGKTSTKEAIASVLAQRFQVVRSRASFNTDVGIALDLLTIDPNTDVVVLEFGEAYRLGE 173

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                ++     G                TN+   H+    T +    A+          
Sbjct: 174 VRELCALAEPRIG--------------VVTNVSYAHLARMGTIERI--AQSIAELPESLP 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                +   D +   +M     A   +  +         +      +     +   G+  
Sbjct: 218 ADGVAVLNGDDFRVRLMAERTPARVLLYGLSPDCHVRAEEIESRGLDGISFDLVAFGERN 277

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G+  V++AL A  +   +G+    +L        V  R   V   +    +  
Sbjct: 278 RVRLPLLGQHSVHHALAAIAVGYELGLTLEEMLPGFHD-PRVQVRLLTVPGINGATLLDD 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y  +  S    L  +  I + R I VFG     G  ++    ++G+ A  + D      
Sbjct: 337 TYNASPASCMAALSLLAEIPAQRRIAVFGDMYELGWYEEEGHRMVGRRAAAVVDRLF--T 394

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             PR+    +  A I  G+         +R E +    E L   D +++  KG
Sbjct: 395 LGPRARWIAE--AAIEAGLAPERVWATDDRRELVAVLRETLRPGDFVLI--KG 443


>gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Filifactor alocis ATCC 35896]
          Length = 452

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 171/471 (36%), Gaps = 36/471 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +  L +    E    + +    + E  I  +++DSR ++ G +F+AI G   DG+ F+
Sbjct: 1   MNI--LKFSQIVEWTEGVVLGDSMFSE-SIYSITTDSRKVKQGDLFIAIKGEHFDGNHFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A++ S ++              ++ V +T K L   AS         ++++
Sbjct: 58  DMALDNGAVAVLSSISHKSPR----------VITVPDTVKALGKLASGYRDMLDIPVISI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++    +         +    G  +           +                 
Sbjct: 108 TGSSGKTTTKDMIFYALNSQCNAYRTEGNFNNEIGMPLTILNSDEE-------------H 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  SS G  ++     K   G  TN+G  H++   +Q+  F A        + +
Sbjct: 155 DVMILEMGMSSLGEIEYLCSIAKPNIGVITNIGTAHLEQLGSQEKIFEA-KMEITSFMHE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   ++  +D + + + K  +    +             K      +   +   ++G + 
Sbjct: 214 KDILLVNGEDKFLRNLDKDVYQPMIKTFGFSN-SCDYFCKNYDYREDSTDICAMIDGLEV 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           ++  P  G+  + N+L A G+   + +D     + L        R +    +     I  
Sbjct: 273 NYTIPSLGKHNILNSLAALGVASVLQMDLQKAAKSLIDFQPSKLRMQIEKKDGI-TIIND 331

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGK-RPIMGKIALDLADIAIVTD 417
            Y    +S++ +L  +    + R I + G   +  RD  K    +G+ A    DI I   
Sbjct: 332 SYNANPDSVKSVLSILAEKNNVRRIAILGDMLELGRDSDKYHRQIGECAAHSCDILIGIG 391

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +   +  G         + E++ T  +++   DV+++  KG
Sbjct: 392 MFSDYMREGALEHGMDEGF--CYSFRTQEESVTTIKDIMRVGDVVLL--KG 438


>gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
 gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
          Length = 464

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 85/470 (18%), Positives = 166/470 (35%), Gaps = 34/470 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L + +  +      I      +  I     DSR ++ G++F+ I G + DGH FI
Sbjct: 6   MK--NLTFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFI 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P    QGA  ++     +            P ++V++T   +   A+         ++ +
Sbjct: 64  PTVFEQGAAIVLSEHELTDPAG--------PYVLVESTTDAMKKLAAFYRKSLDIKVVGI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + ++        G  +               P+ +        S 
Sbjct: 116 TGSVGKTSTKEMISSVLEQKYSVHKTAGNFN----------NEIGLPLTIFGI---RESH 162

Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  S  G + HRL           TN+G  H+++   +     AK   FE ++P
Sbjct: 163 QVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMP 221

Query: 240 KESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                +   DD     + V  +      +  + G               +  +       
Sbjct: 222 DAVAVLNADDDKLATVQTVNGKPAIYYGKESASGVHKSVYTTNIENLGFDGMKAHFVTPE 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +FD    +PGE  VYNA+ AA + + +G+  A +   +EK   + GR  F+   + G  
Sbjct: 282 GEFDAHIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIK--THGMT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAI 414
           +  D  + +         + +   GR I V G  G+    ++     +G+   +     +
Sbjct: 340 VIDDCYNANPVSMKSSIEVLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTL 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E      AE    +       +R    +  +  + + D ++V
Sbjct: 400 FAAGELAKE-YAAGAAEKSSDVD-IHYFEDRETMTQELLSYVKEGDTILV 447


>gi|289750755|ref|ZP_06510133.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T92]
 gi|289758279|ref|ZP_06517657.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T85]
 gi|289691342|gb|EFD58771.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T92]
 gi|289713843|gb|EFD77855.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T85]
          Length = 120

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 63/107 (58%), Gaps = 7/107 (6%)

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGF 439
           +VFG GGDRD GKR  MG+IA  LAD+ +VTDDNPR EDP  IR EI+ G          
Sbjct: 1   MVFGAGGDRDPGKRAPMGRIAAQLADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQV 60

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
           +E  +R +AIR A+      DV+++AGKGHET      G  +   D 
Sbjct: 61  VEIADRRDAIRHAVAWARPGDVVLIAGKGHETGQ-RGGGRVRPFDDR 106


>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 459

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 163/475 (34%), Gaps = 39/475 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L D+       +I           + +I  VS +SR    G +F A+ G++ DGH F+P
Sbjct: 4   RLLDIARAIEGNIIQGR-------PDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVP 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+  GA A VVS   SL            +++V + +K L + A     +   +++ VT
Sbjct: 57  EALRNGALAAVVSRPVSLPQGLGERG----LILVRDVKKALQMLARWHRQRFKLHLVGVT 112

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++         +    +    G                  P+ L           
Sbjct: 113 GSVGKTTTKDLTATCLEARFQTLKTEGN----------YNNEIGVPLTLL---RLDHRYE 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V +   + G  +          G   N+   H++   + +    A      + + + 
Sbjct: 160 ACVVEMAMRNLGEIEELASIALPTCGIIVNVEPVHLENLGSMERIAQA-KCELFKYVDER 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               I  D+    E  ++      R          +      +   + + +++ +  +F 
Sbjct: 219 GFVAINGDNPLLVEAAEKYAVKKVRFGWGANCDDRLLDVNSSSEETRIKASLAGQAAEFC 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P PG    YN + AAG+ + +G+D A +   +        R            I   
Sbjct: 279 --LPFPGSHLAYNVIAAAGVAVRLGVDLADIQSKIRSFSPSSRRLNIKTGLGGITIIDDC 336

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
           Y     S++  L+ +  + +GR  + V G     G  +      +G  A +L    +VT 
Sbjct: 337 YNANPVSMKAGLEVLSDVAAGRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTV 396

Query: 418 DNPRSEDPEKIRAEII-HGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                E    I       G+     +   ++  AI      L  + V+++ A +G
Sbjct: 397 ----GELARHIGEAAKEAGLDKERILHFSDKELAIAYLKSDLPAEAVVLIKASRG 447


>gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
          Length = 237

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 26/238 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKD 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
            +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH+T   Y + K
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVK 220


>gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
 gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
          Length = 466

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 101/471 (21%), Positives = 177/471 (37%), Gaps = 40/471 (8%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            ++      +++             K  +VS+D+R I++G++FVA+ G+  DGH FI  A
Sbjct: 13  SNMAEFTLSQVLEATKGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAA 72

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I +GA   +V    S++            + VDNT       A     +    ++A+TG+
Sbjct: 73  IEKGATGAIVEKGRSVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGS 124

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++             + +  +G    +    ++       P  L +  +   +    
Sbjct: 125 SGKTTTKE----------MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEAC--- 171

Query: 184 HVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              VE    GL Q     +      G  TN+G  HI+   +++A   AK  L    LP+ 
Sbjct: 172 --VVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPEN 228

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           S AI+  DD Y K +       G  +     +        +    +  + T     + FD
Sbjct: 229 SVAILNEDDPYVKAM--DRLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFD 286

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+ GE  VY+AL A      +GI S  + + L +    P R E V        +   
Sbjct: 287 IFLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFSGTPMRQEIVPFEDI-VILNDA 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y    +S+   +K +  +   R I + G     GD  +     +G +  +     + T  
Sbjct: 346 YNANPSSMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFT-- 403

Query: 419 NPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +    I  E    G+  F    +   A   + ++  K DV++V  KG
Sbjct: 404 --FGDAAAFIAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILV--KG 449


>gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
 gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
          Length = 452

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 100/465 (21%), Positives = 178/465 (38%), Gaps = 40/465 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +++             K  ++S+D+R I++G++FVA+ G+  DGH FI  AI +GA 
Sbjct: 5   TLSQVVEATQGTSAHTDNIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGAT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +V    +++            + VDNT       A     +    ++A+TG+SGK++ 
Sbjct: 65  GAIVEKGRAVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTT 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                       + +  +G    +    ++       P  L +  +   +       VE 
Sbjct: 117 KE----------MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEAC-----VVEM 161

Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              GL Q     +      G  TN+G  HI+   +++A   AK  L    LP+ S AI+ 
Sbjct: 162 GMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPENSVAILN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD Y K +   +   G  +     +        +    +  + T     + FD   P+ 
Sbjct: 221 EDDPYVKAM--DSLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMI 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VY+AL A      +GI S  + + L +    P R E V        +   Y    +
Sbjct: 279 GEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFEDI-VILNDAYNANPS 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +K +  +   R I + G     GD  +     +G++  +     + T      + 
Sbjct: 338 SMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFT----FGDA 393

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I  E    G+  F  K +   A   + ++  K DV++V  KG
Sbjct: 394 AAFIAKEAKKAGLTAFRCKSHLEMANAYS-DIREKGDVILV--KG 435


>gi|261337529|ref|ZP_05965413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum
           DSM 20093]
 gi|270277931|gb|EFA23785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium gallicum
           DSM 20093]
          Length = 524

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/521 (16%), Positives = 172/521 (33%), Gaps = 47/521 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+++I +D   L          +R++ +  ++  +  +  G   V   G       ++  
Sbjct: 18  LREIITRDGWTL---NPSDVPGYRDQ-VTGLTYSTTQVVPGSALVC-KGRFR--AEYLQD 70

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              Q     V +  YS         +  P L+V+N  + LSL A+  Y    + +  +  
Sbjct: 71  IDQQRLAWYVATEDYSA-------YTAAPGLIVNNATQALSLLAAAYYDYPQDELTVIGI 123

Query: 123 TSGKSSVASFVQQICQRS---GLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSYL 177
           T  K    +        +   G                   ++ LTTP  +   + +   
Sbjct: 124 TGTKGKTTTAYFTQAMLNALSGGKCALFSSNDNCIDGVHYVESDLTTPESLDAFRMMRQA 183

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G+ ++ +E SS     +R+ G+      F N+  DH+   +     F   +    ++
Sbjct: 184 REHGMEYLVMEVSSQSYKVNRVYGLHFDVAGFLNISPDHVSPIE--HPTFEDYLYCKRQI 241

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-------------CA 284
           +   S  ++ AD  + + +++ AH     V   G +   +                    
Sbjct: 242 IANTSALVLGADCDHVRLLLQDAHLHDVPVTLFGTEDSTLPDDGQSTPLGLVTVGAADER 301

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                               P    +    A +A      +  ++ +  + L+++ +  G
Sbjct: 302 HDRFDVTVFGDPAGSIALAMPGDFNYVNAAAAIALIEAAGVPFNADVAYKALDEVRI-AG 360

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGKRPI 401
           R E    +     + VDYAH   S+  +L  +            ++ G  G +   +R  
Sbjct: 361 RMETTRDDESNTVVIVDYAHNGISVTSVLDYVDLQWGQEQPSITLITGSAGGKALDRREE 420

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLN 457
           M + A    D  I T D+P  E  + I   +   I           +R +AI +AIE   
Sbjct: 421 MVRAAEQRIDHFIFTTDDPNEEPVQDICEHMASYIQAPDVRHSIILDRAQAIASAIEEAR 480

Query: 458 KQD-----VLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
             D     V++  GKG E              D  ++  +L
Sbjct: 481 ADDSGRLHVILALGKGEERWIKAHGKHMPYEGDDHVVARLL 521


>gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
 gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
          Length = 433

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 153/404 (37%), Gaps = 23/404 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L     + +E K    S D+R+I+ G ++VA+ G + DGH F+  A  
Sbjct: 1   MIELTLSEVAPALGTT-WKGQEIKFTGCSIDTRNIKPGTLYVALRGERFDGHDFVKDAQQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA AI+V               + P L V +TRK L   A     +    ++A+TG++G
Sbjct: 60  KGASAIIVERDVVC---------DLPTLRVADTRKALGDLARFWRQRFDLPVVAITGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    ++ I  +   +               ++      P+ L    +         +
Sbjct: 111 KTTTKEMLKTIFTQKISAESNEINVLATQGNLNND---IGVPLTLFNLQANHR---YAII 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     K    + T     H++  ++ +    AK  +F   L ++  AI
Sbjct: 165 EMGANHAGEIAYLTQMAKPSVATITQCAPAHLEGFKSVEGVALAKGEIFSH-LTEDGIAI 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DDAY+    + A +      ++         K +    +     +  +  D     P
Sbjct: 224 INNDDAYTTLWHELAASHQINTFALENTADVT-AKDIQLNEDSCDFILHTQKSDIAIHLP 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           LPG+  + NAL A+   +A G    ++ + L+ +  V GR +    N  G  +  D Y  
Sbjct: 283 LPGQHNIMNALTASACALACGCSLEIIQQGLQNMQPVKGRLQLHKIN--GITLIDDTYNA 340

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
              SL   L  +        +++      G +        G+ A
Sbjct: 341 NPTSLNAALAILSNYPPPYWLILGDMKELGQKSAEFHQQAGQRA 384


>gi|158834108|gb|ABW81859.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 100/294 (34%), Positives = 145/294 (49%), Gaps = 10/294 (3%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TT S I + K L++   QG +  ++E SSHGL QHR+  +   A  FTNL RDH+DYH
Sbjct: 7   ENTTGSAIDVQKTLNHFVMQGASFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYH 66

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL----SVGYQGKF 276
                Y  AK +LF     KE      ADD   +  + +  +A    +       ++G++
Sbjct: 67  GDMARYEAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +  + +        +       +   +  L G F V N L+A    +A+      ++  +
Sbjct: 125 LEAQNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  +FGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDRPT-VIVDYAHTPDALEKALVAARLHCKGQLWCLFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G   I   +   NR E
Sbjct: 244 GKRALMGSIAEQWADHLVVTDDNPRTEDPGSIVADILSGLVEIRHAVVIHNRAE 297


>gi|254796629|ref|YP_003081465.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
 gi|254589866|gb|ACT69228.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
          Length = 470

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 103/442 (23%), Positives = 192/442 (43%), Gaps = 16/442 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  ++SD + +   ++F A    KE  H  I +AI +GA++I+ +  Y        +  
Sbjct: 16  RIKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGAKSILTNQKYE-----ECLEQ 67

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
                V    ++      S ++ K P  + A+ GTSG+ SV  F  Q+C  +G  +  + 
Sbjct: 68  GVDFFVHAQPQQIYHGICSFMWKKQPTFVCAIIGTSGRKSVGHFFSQVCTLAGKKAVTLS 127

Query: 149 PTSTISSFAQDNR---LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            ++      +  +           +   L  L+ + + +  +  S+  ++   +D + L 
Sbjct: 128 VSNEPMDTPKLWQEKDHLISDAADMYNILDDLAERRIEYCCLAISAAAIESRMIDSVNLK 187

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A +FTNL RD ++  +        K+RL  E+LP+    ++     Y+  +M+  H    
Sbjct: 188 AAAFTNLLRDDLEQPEDVDRRLQTKIRLLSEILPENGIMVLPVASEYTTRIMQ--HCPNK 245

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +V + G     I L         Q +T+ + GK+      + G+FQ  N + A GL I+ 
Sbjct: 246 KVCTYGRATSDIQLISQLPTQKGQILTMKILGKEMVVHTNILGKFQGNNLVTAMGLAISC 305

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           GID + +     ++  + G  EF+       +I  D A T + L  +L +I+       +
Sbjct: 306 GIDPSSIEHE--QISPLAGYMEFLEDYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDV 363

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            +V  C  + +      M KIA  + +  I T D+  S   EK R E++   P  IE  +
Sbjct: 364 TLVLRCSENYEARNTLKMAKIAAKMVNRIIFTSDSHGSMLTEKTRRELMSCCPKAIEIED 423

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
           R +A+  AI      +++V+ G
Sbjct: 424 RKKAMEYAINNCKPSEIIVMQG 445


>gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 459

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 159/445 (35%), Gaps = 33/445 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+ + +DSR ++AG  FVA+ G   DG  F+P A+++GA A++V                
Sbjct: 26  ISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGAAAVIVDR-----MQPGFGPLA 80

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++ V +T K L   A     +    I+A+TG+SGK+S    V  + ++   +    G 
Sbjct: 81  VPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEMVGSVLRQKYKTVCTSGN 140

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ L +      +       +  +  G        I       
Sbjct: 141 FNNQ----------IGLPLSLLQM---DKTTEYGVFELGTNHPGEIATLSRIIAPDIVIV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H+ +  + +A            +     AI+  DD +SK +     +AG  +  
Sbjct: 188 TNIGSAHVGHFGSVEAIAQE-KTDLLTFVSARGFAILGTDDFWSKRL--HVRSAGRVIWV 244

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              Q     L ++       +  I    + F+   P        N+L AA +     + S
Sbjct: 245 GDRQNSLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFLSSLSS 304

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVF 388
             +   LEK     GR         G  +   Y     S+   L+ +       + IVV 
Sbjct: 305 EEITRGLEKTSFPEGRLTVHPIK-NGFVLDDSYNANPQSMLSALRALVEYPFSSKKIVVL 363

Query: 389 GCG---GDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           G     GD+ +     +G  A    L+ + +V    P  ED  +        I       
Sbjct: 364 GSMGELGDKARASHFEVGSFAGGLPLSHVIVV---GPYGEDVYEGLRSSSFPIDCIFRTA 420

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  EA     ++LN    ++V  KG
Sbjct: 421 DTEEAFFCLHKLLNGNVTVLV--KG 443


>gi|158834104|gb|ABW81857.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 99/294 (33%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH
Sbjct: 7   ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYH 66

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y  AK +LF     KE      ADD   +  + +  +A    +       +    
Sbjct: 67  GDMARYEAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124

Query: 281 ----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +        +       +   +  L G F V N L+A    +A+      ++  +
Sbjct: 125 LETKNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDRPT-VIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIE 447
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G+      +   NR E
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGLVXXXHAVVIHNRAE 297


>gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
 gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
          Length = 466

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 180/470 (38%), Gaps = 40/470 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++      +++             K  ++S+D+R I++G++FVA+ G+  DGH FI  AI
Sbjct: 14  NMAEFTLSQVVEATQGANAHTDNIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAI 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA   +V    +++            + VDNT       A     +    ++A+TG+S
Sbjct: 74  EKGATGAIVEKGRAVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSS 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++             + +  +G    +    ++       P  L +  +   +     
Sbjct: 126 GKTTTKE----------MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEAC---- 171

Query: 185 VSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             VE    GL Q     +      G  TN+G  HI+   +++A   AK  L    LP+ S
Sbjct: 172 -VVEMGMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPENS 229

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+  DD Y K +   +   G  +     +        +    +  + T     + FD 
Sbjct: 230 VAILNEDDPYVKAM--DSLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDI 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ GE  VY+AL A      +GI S  + + L +    P R E V        +   Y
Sbjct: 288 FLPMIGEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFEDI-VILNDAY 346

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
               +S+   +K +  +   R I + G     GD  +     +G++  +     + T   
Sbjct: 347 NANPSSMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFT--- 403

Query: 420 PRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    I  E    G+  F  K +   A   + ++  K DV++V  KG
Sbjct: 404 -FGDAAAFIAKEAKKAGLTTFRCKSHLEMANAYS-DIREKGDVILV--KG 449


>gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
 gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
          Length = 452

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 101/465 (21%), Positives = 175/465 (37%), Gaps = 40/465 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +++             K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA 
Sbjct: 5   TLSQVLEATKGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKGAT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +V    S++            + VDNT       A     +    ++A+TG+SGK++ 
Sbjct: 65  GAIVEKGRSVE--------GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTT 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                       + +  +G    +    ++       P  L +  +   +       VE 
Sbjct: 117 KE----------MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEAC-----VVEM 161

Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              GL Q     +      G  TN+G  HI+   +++A   AK  L    LP+ S AI+ 
Sbjct: 162 GMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPENSVAILN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD Y K +       G  +     +        +    +  + T     + FD   P+ 
Sbjct: 221 EDDPYVKAM--DRLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMI 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VY+AL A      +GI S  + + L +    P R E V        +   Y    +
Sbjct: 279 GEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFSGTPMRQEIVPFEDI-VILNDAYNANPS 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +K +  +   R I + G     GD  +     +G +  +     + T      + 
Sbjct: 338 SMAEAIKALGQLEGKRKIAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFT----FGDA 393

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I  E    G+  F    +   A   + ++  K DV++V  KG
Sbjct: 394 AAFIAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILV--KG 435


>gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103]
 gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103]
          Length = 452

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 156/405 (38%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +++   +   +  +N+V++D+R + AG +FVAIVG + D H F   AIA+GA+A++VS
Sbjct: 9   LAEIASGTLHGDDLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGAKALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  + P +VV +TR      A+ +  +    ++A+TG+SGK+SV     
Sbjct: 69  K---------HLPVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G +    G  +            TP                   + + A+  G 
Sbjct: 120 SILRQCGETLHTAGNLNNDFGVPMTLLRLTPE-------------HQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++  A    NL   H++   + +    A        LP    AI+ AD     
Sbjct: 167 IAYTTDLVRPEAALVNNLAAAHLEGFGSLEGVAKA-KGEIFYGLPARGTAILNADSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S            +    +     +     + D + PLPG   + N
Sbjct: 226 RWQENLHGKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMRTPRGEADIILPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +++    + V   L+ L  VPGR   V  +     +   Y     S+    +
Sbjct: 286 ALAAAALALSVDAPLSAVQAGLKSLQSVPGRLFPVRLSEHQLILDDSYNANVGSMVAAAQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
            +  +   R++VV      GD  +     +G  A     D  + T
Sbjct: 346 VLSEMPGYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLST 390


>gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group]
          Length = 889

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 92/440 (20%), Positives = 192/440 (43%), Gaps = 32/440 (7%)

Query: 10  DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              EL+++  + P+     ++  +  V  D+  + AG ++V + G +  G   + +A  +
Sbjct: 226 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCV-GEE--GLAGLTEADKR 282

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A+V      ++   A       +++VD+    L +  + LY +  +++  + V GT 
Sbjct: 283 GAVAVVADQTVDIEGTLACRA----LVIVDDITAALRMLPACLYRRPSKDMAVIGVAGTD 338

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G ++ A  V+ + +  G+ +  +G        ++        +  PI + + ++ +   G
Sbjct: 339 GVTTTAHLVRAMYEAMGVRTGMVGVLGAYAFGNNKLDAQPDASGDPIAVQRLMATMLYNG 398

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                +E ++ G+    +D  I       TN+     +   T + Y N+   LF  ++  
Sbjct: 399 AEAALLEVTTDGMPSSGVDSEIDYDIAVLTNVRHAGDEAGMTYEEYMNSMASLFSRMVDP 458

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGK 298
           E    +   D  S             V++  ++ K   +   K      + +V +     
Sbjct: 459 ERHRKVVNIDDPSAPFFAAQGGQDVPVVTYSFENKKADVHTLKYQLSLFETEVLVQTPHG 518

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    L G   +YN L +  + +A+G     +++ +E++  +PGR E +    +   +
Sbjct: 519 ILEISSGLLGRDNIYNILASVAVGVAVGAPLEDIVKGIEEVDAIPGRCELI-DEEQAFGV 577

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-------------VVFGCGGDRDQGKRPIMGKI 405
            VD+A T  SL  +L  ++ +   RI+             VV GC G+R++GKRP+M K+
Sbjct: 578 IVDHARTPESLSRLLDGVKELGPRRIVTVLRIEVPAMMFDVVIGCCGERERGKRPVMTKV 637

Query: 406 ALDLADIAIVTDDNPRSEDP 425
           A + +D+ ++T DNP +EDP
Sbjct: 638 AAEKSDVVMLTSDNPANEDP 657


>gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
 gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
          Length = 337

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 30/343 (8%)

Query: 1   MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L + L+ +   E +           +RKI ++   S  ++ G +FV I G + +GH +
Sbjct: 1   MQLLRSLLKQILYESVRGDD-------DRKITDICCHSEKVKEGSLFVCINGYRNNGHEY 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATI---------------RSNTPILVVDNTRKFLSL 104
           +PQA+  GA  +VV   Y ++  S  +                 N  ++ V +TRK LS 
Sbjct: 54  VPQAVEHGAAVLVVDDRYVIESRSGPVILTEHMKVNVYELIRDRNICVVAVRDTRKALSA 113

Query: 105 FASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN-R 161
            ++  +    E   ++ +TGT+GK++ A     I Q +G     IG   +     ++  +
Sbjct: 114 LSAAFFDHPAERMKMIGITGTNGKTTTAFLTAGILQEAGYRVGMIGTIESYDGRRRETVK 173

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            TTP    + + LS +         +E SS G+   R   I    G F N+  DHI   +
Sbjct: 174 NTTPESCEIHRLLSRMVENECDCCVMEVSSQGIALQRTADIFFDIGVFLNIEPDHIG--K 231

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHL 279
            + A F+  +     L+ +    I+  DD    +++           +            
Sbjct: 232 GEHATFSEYLYCKSRLMRQCGIGIVNQDDPNVDKILAGHTCEVENFSIRHPSDVMAEDEW 291

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             + +   +   T+  E +  D +  LPG+F +YNAL A  + 
Sbjct: 292 YGMESGSLQSHFTVKREWRREDIVMQLPGQFNIYNALAAISVA 334


>gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
 gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
          Length = 452

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 92/472 (19%), Positives = 167/472 (35%), Gaps = 53/472 (11%)

Query: 1   MKLQDL---IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           M L+++   +   F ++   LS       ++ IN++S+DSR IQ   IF+A+ G+K DGH
Sbjct: 1   MILREIPTILSGTFQKISQTLS-------DKSINKISTDSRTIQENDIFIALQGDKFDGH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F+ + I +GA A++V+   S++          P +VV +T       A+         I
Sbjct: 54  RFVDEVIDKGAIALIVNHEVSVKST-----KEIPQIVVKDTLIAYQEIANWWRNHVKIPI 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG+ GK++    +          +  +G    +     +       P  L    +  
Sbjct: 109 IGITGSVGKTTTKEII----------AAVLGVYGNVHKTQANYNNEIGVPKTLLGLTTNH 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   +           L            G  TN+G  HI    ++QA   A        
Sbjct: 159 NYAVIEMAMRGKGEIALLSQIA---CPTIGIITNVGTAHIGRLGSRQAIAEA-KCELLAE 214

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P+ S AI+  DD    E              +        L +             +  
Sbjct: 215 MPENSVAILNHDDQRLVETAATVWQGKTITYGLEGGDITGELLENQI----------LRV 264

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  DF  PLPG     N L A  +   + +D    L     +++  GR +     +    
Sbjct: 265 EGMDFPLPLPGRHNALNYLAALAVTKELNLDW-TFLMEGVTVNLPQGRSQQYSLKNDVIL 323

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA-DIA 413
           +   Y     S++  L+ ++     R + V G      D        +G+ A  LA D  
Sbjct: 324 LDETYNAGLESMKAALQLLKDTPGTRHLAVLGTMKELADASAELHREVGETAEKLAIDAL 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLV 463
            +  D+P+S         I  G+            + I+   E++   D ++
Sbjct: 384 FILVDDPQS-------QAITKGVTTIETQSFPTHEQLIQRLREVIQPGDRIL 428


>gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 255

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 11/210 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI------ 86
           ++ DSR +  G +FVA+ G++ DG  FI +AI QGA  ++  +     +           
Sbjct: 24  MTLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYN 83

Query: 87  --RSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGL 142
             R+   +++V N  + LS  A   Y    E   ++ VTGT+GK++ A  + Q     G 
Sbjct: 84  LDRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQWHNLLGG 143

Query: 143 SSFQIGPTSTISS-FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            S  +G          Q+   TT S I + + L+     G    ++E SSHGL Q+R + 
Sbjct: 144 KSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAEA 203

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +      FTNL RDH+DYH+T + Y  AK 
Sbjct: 204 LSYDLAVFTNLSRDHLDYHKTMEEYAQAKF 233


>gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 452

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 154/468 (32%), Gaps = 46/468 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+I+  S         +  ++S+D+R I+AG++FVA+ G+  DGH FI  AI +GA 
Sbjct: 5   TLQEIIDATSGTCKGDVSLQFKDISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKGAT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +V    S+             + V+NT K     A+    +    ++A+TG+SGK++ 
Sbjct: 65  AAIVEKGRSV--------DGIICVEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTT 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V  +              +      +     +P                     VE 
Sbjct: 117 KEMVAAVLSTEFNVLKTEKNFNNEIGLPKTLLQLSPE---------------HEACVVEM 161

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              GL Q     +                          A+ +             I  +
Sbjct: 162 GMRGLGQIEELALIAEPTIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNE 221

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D +  + M            +      I    +    +  + T     + FD   P+ GE
Sbjct: 222 DDHFVKAMSSIAEGKTVTYGIHSNATVIGSH-LRYKKDGIKFTCKCYDEVFDVFLPMIGE 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VY+AL A      +G+ S+ + + L      P R E V        +   Y    +S+
Sbjct: 281 HNVYDALAAIAAGRVLGVKSSKIKKGLSDFTGTPMRQEIVAFEDI-VILNDAYNANPSSM 339

Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              +K +  +   R I + G     GD  +     +G++  +     + T      E   
Sbjct: 340 SESIKALGQLEGKRKIAMLGDMLELGDFTEEGHRQVGRLLAEEGYSVVFT----FGEAAN 395

Query: 427 KIRAEI-IHGIPGFIEKGNRIEA-----IRTAIEMLNKQDVLVVAGKG 468
            I  E  + G+       +   A     IR       K DV++V  KG
Sbjct: 396 FIAKEAKLAGLEVHRCNSHLEMANAYNDIR------EKGDVILV--KG 435


>gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 452

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 155/403 (38%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +    L    +Q ++  I++V++D+R + AG +FVA+ G + D H F+  A  
Sbjct: 1   MISITLSQAAAILKGT-LQGQDLTIDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSAKE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P +VV +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRKLDI---------DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            T                    +
Sbjct: 111 KTSVKEMTAAILGQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HEFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +      A    NL   H++   + +    AK  ++   LP +  AI
Sbjct: 158 ELGANHQGEIAWTVSLTCPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTG-LPADGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T++      D L P
Sbjct: 217 MNADNNDWLNWQSIIGSRKTWRFSPNAANSDFTATNIHVTSHGTEFTLNTPTGGVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGASHDAIKTGLANLKAVPGRLFPIPLAENKLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV   G  GD  +     +G+ A
Sbjct: 337 VGSMTAAVQVLSEMPGYRVMVVGDMGELGDESEACHIQVGEAA 379


>gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 453

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 145/384 (37%), Gaps = 24/384 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS          
Sbjct: 19  GENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P L+V +TR  L   A+ +  +    ++A+TG+SGK+SV      I ++ G   
Sbjct: 70  RLLVDEPQLLVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L +  +         + + A+  G   +  D ++ 
Sbjct: 130 YTAGNFN----------NDIGVPLTLLRLTAE---HQFAVIELGANHIGEIAYTTDLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F  L       +    + +    +   H   
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHWQVMLNHKTV 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R               V  +      T+     +   L PLPG   V NAL A  L ++
Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATALAMS 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G     V   L +L  VPGR   +  +     +   Y     S+    + +  +   R+
Sbjct: 297 VGATLEAVKSGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356

Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406
           +VV   G  GD        +G+ A
Sbjct: 357 MVVGDMGELGDEAPECHRQVGEAA 380


>gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 452

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 99/465 (21%), Positives = 178/465 (38%), Gaps = 40/465 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +++   +         K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA 
Sbjct: 5   TLSQVVEATAGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKGAT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +V    +++            + V+NT       A     +    ++A+TG+SGK++ 
Sbjct: 65  GAIVEKGRAVE--------GIICIEVENTLVAYQNLARYHRRRFDIPVVAITGSSGKTTT 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                       + +  +G    +    ++       P  L +  +   +       VE 
Sbjct: 117 KE----------MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEAC-----VVEM 161

Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              GL Q     +      G  TN+G  HI+   +++A   AK  L    LP+ S AI+ 
Sbjct: 162 GMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAEAKGELIRC-LPENSVAILN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD Y K +   +   G  +     +        +    +  + T     + FD   P+ 
Sbjct: 221 EDDPYVKAM--DSLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMI 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VY+AL A      +GI S  + + L +    P R E V        +   Y    +
Sbjct: 279 GEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFEDI-VILNDAYNANPS 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +K +  +   R I + G     GD  +     +G++  +     + T      + 
Sbjct: 338 SMAEAIKALGQLEGKRKIAMLGDMLELGDFSEDAHREIGQLLAEEGYSVVFT----FGDA 393

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I  E    G+  F    +   A   + ++  K DV++V  KG
Sbjct: 394 AAFIAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILV--KG 435


>gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus
           cereus Q1]
 gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus Q1]
 gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 168/467 (35%), Gaps = 40/467 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +
Sbjct: 10  EQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +          N P++ V++T   L + A     +    ++ VTG++GK+S    
Sbjct: 70  WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDI 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  +           G  +               P+ +    +   +  V  + +  SS 
Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    +++A   AK+ +   L            D  
Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N     ++ G      +      +            ++  F  P+ G+  V
Sbjct: 229 LLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +    + IVV G     GD++      +GK+        + T          K+
Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--------YGKL 400

Query: 429 RAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            A+I  G              N+ E ++    +++ +DV+++ A +G
Sbjct: 401 GAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLIKASRG 447


>gi|149923017|ref|ZP_01911435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149816138|gb|EDM75648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 437

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 107/411 (26%), Positives = 152/411 (36%), Gaps = 44/411 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS------PIY-- 169
           + VTGT GK+S   F+     R+G        T   S    D   + P       P    
Sbjct: 18  VGVTGTDGKTSTTRFLAAAMARAGGGPTARVTTVDASILRCDPDGSAPLREHGGPPPENH 77

Query: 170 ---LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L          G    ++EA+S  L            G FTNLG DH+  H + + Y
Sbjct: 78  RAFLRHLGQLRDEPGPRFAAIEATSTTLAIGFATAWPFRVGVFTNLGHDHLRAHGSYEHY 137

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A        LP    A++ ADD     V +        +   G          +    
Sbjct: 138 L-ASKAQLFLSLPPGGFAVLNADDPTHALVAEVLPEGVQALWFAGPGRAEDRPVDLRLST 196

Query: 287 NKQQVTISVEGKDFDF--------------------LFPLPGEFQVYNALVAAGLCIAIG 326
                    E +                               FQ  NA  A    +A+G
Sbjct: 197 LPSSPGEPPEPRSAWTGQRLRVDCSLPAGSALPSTLTLRALPRFQTENAAAALLAALALG 256

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRG-------GRIYVDYAHTSNSLEMILKNIRTI 379
           + +A     + +     GRFE +              R+ +DYAHT  +LE++L+  R +
Sbjct: 257 LPAAPAAAAIAECEPPVGRFELLALPELDAEARARLPRVVIDYAHTPEALELVLRCAREL 316

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
             GR  VVFG GG  D  KR  +G +A  +AD   VT DNPR EDP  I  ++  GIP  
Sbjct: 317 HPGRCFVVFGAGGSADPSKRAPLG-LAASVADRIFVTTDNPRDEDPSDIARQVCAGIPAG 375

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
              + + +R +AI  AI      D+++VAGKGHE    +   E+    D D
Sbjct: 376 HPHVVELDRGQAIALAIAEAQPGDLVIVAGKGHERDQ-IRGKERTPFSDHD 425


>gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 258

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 26/238 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     +I  +  DSR I +G +F+ + G   DG    
Sbjct: 1   MKLKELANLLMIK-------ETIGDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDINIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAK 172
            +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQGPPTLQR 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            L  + +Q   +  +E +S GL   R+         FTNL +DH+DYH T   Y + K
Sbjct: 163 NLQMMKNQNADYCVMEVTSQGLHMERVKECNFKIAVFTNLTQDHLDYHGTFDEYKHVK 220


>gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale DSM 17629]
          Length = 464

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 163/470 (34%), Gaps = 34/470 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L + +  +      I      +  I     DSR ++ G++F+ I G + DGH FI
Sbjct: 6   MK--NLTFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFI 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P    QGA  ++                  P ++V +T   +   A+         ++ +
Sbjct: 64  PNVFEQGAAIVLSEHELKDPAG--------PYVLVGSTTDAMKKLAAFYRKSLDIKVVGI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + ++        G  +               P+ +        S 
Sbjct: 116 TGSVGKTSTKEMISSVLEQKYSVHKTAGNFN----------NEIGLPLTIFGI---RESH 162

Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  S  G + HRL           TN+G  H+++   +     AK   FE ++P
Sbjct: 163 QVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMP 221

Query: 240 KESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                +   DD     + V  +      +  +                 +  +       
Sbjct: 222 DAVAVLNADDDKLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPE 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +FD    +PGE  VYNA+ AA + + +G+  A +   +EK   + GR  F+   + G  
Sbjct: 282 GEFDAQIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIK--THGMT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAI 414
           +  D  + +         + +   GR I V G  G+    ++     +G+   +     +
Sbjct: 340 VIDDCYNANPVSMKSSIEVLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTL 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E      AE    +       +R    +  +  + + D ++V
Sbjct: 400 FAAGELAKE-YAAGAAEKSSDVD-IHYFEDRETMTQELLSYVKEGDTILV 447


>gi|213585692|ref|ZP_03367518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 338

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 106/341 (31%), Positives = 159/341 (46%), Gaps = 10/341 (2%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI+  +     D         P+
Sbjct: 1   MTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPV 60

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           + +    + LS  A R Y +  EN+  +AVTGT+GK++    + Q  Q  G +S  +G  
Sbjct: 61  VYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTV 120

Query: 151 STI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                        TT S + +   L+ L +QG T  ++E SSHGL QHR+  +K  A  F
Sbjct: 121 GNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVF 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--- 266
           TNL RDH+DYH     Y  AK  L+         AI+ ADD   +  +    +A      
Sbjct: 181 TNLSRDHLDYHGDMAHYEAAKWMLYS--THHHGQAIVNADDEVGRRWLASLPDAVAVSME 238

Query: 267 -VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++    G+++  + V        +  +    + +    L G F V N L+A    +A+
Sbjct: 239 GHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLLLALATLLAL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           G     +L+   +L  V GR E   T      + VDYAHT 
Sbjct: 299 GYPLTDLLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTP 338


>gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale M104/1]
          Length = 464

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 166/470 (35%), Gaps = 34/470 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L + +  +      I      +  I     DSR ++ G++F+ I G + DGH FI
Sbjct: 6   MK--NLTFANIAKACEGTYIGDETQLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHRFI 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P    QGA  ++     +            P ++V++T   +   A+         ++ +
Sbjct: 64  PTVFEQGAAIVLSEHELTDPAG--------PYVLVESTTDAMKKLAAFYRKSLDIKVVGI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + ++        G  +               P+ +        S 
Sbjct: 116 TGSVGKTSTKEMISSVLEQKYSVHKTAGNFN----------NEIGLPLTIFGI---RESH 162

Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  S  G + HRL           TN+G  H+++ + +     AK   FE ++P
Sbjct: 163 QVAVLEMGISDFG-EMHRLSTMSCPDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHMMP 221

Query: 240 KESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                +   DD     + V  +      +  +                 +  +       
Sbjct: 222 DAVAVLNADDDKLATVQTVNGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPE 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +FD    +PGE  VYNA+ AA + + +G+  A +   +EK   + GR  F+   + G  
Sbjct: 282 GEFDAHIHIPGEHNVYNAMAAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIK--THGMT 339

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAI 414
           +  D  + +         + +   GR I V G  G+    ++     +G+   +     +
Sbjct: 340 VIDDCYNANPVSMKSSIEVLSHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTL 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E      AE    +       +R    +  +  + + D ++V
Sbjct: 400 FAAGELAKE-YAAGAAEKSSDVD-IHYFEDRETMTQELLSYVKEGDTILV 447


>gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 466

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 88/412 (21%), Positives = 147/412 (35%), Gaps = 30/412 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL+     + +     F         N VS DSR I+ G ++ A+ G + DGH FI +
Sbjct: 6   LKDLMRVVGGKFVKGNPGFSA-------NGVSIDSRTIKKGEVYFAMQGARYDGHDFIKE 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA-VT 121
           AI +GA A+V S      DF  +   +  I+  ++T   L  FA     K     +A +T
Sbjct: 59  AINKGAAAVVCSKD--KIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGIT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    +  I  R G +    G  +            T                 
Sbjct: 117 GSNGKTTTKEILVSIFNRKGRTLSNKGNFNNRIGIPLSIFNLTSDI-------------E 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +  S  G  +   D +   AG  TN+G  H++   + +  F  K  LF+ +    
Sbjct: 164 YAVFEMGTSLRGEIKILSDILNPDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETG 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                  ++     +    + +   +         +  K +    NK    I  +G    
Sbjct: 224 FIV---INNDDEFLMTAPQYVSRKIIAFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVK 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G F V NAL A    I  G     +   +E       R E + T +    I   
Sbjct: 281 IAMPAKGRFNVSNALAAVACAIGFGFSLDEIKCGIENFMPPKMRMETLVTGTDVVLINDA 340

Query: 362 YAHTSNSLEMILKNIRTITSGRII-VVFGCG---GDRDQGKRPIMGKIALDL 409
           Y    +S++  ++ +    SG+ I +V G     GD+       +GK     
Sbjct: 341 YNANPSSMKKAIQAVLQSYSGKKINLVLGDMLELGDKSADYHSELGKFINAH 392


>gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter sp. 638]
 gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterobacter sp. 638]
          Length = 452

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 89/403 (22%), Positives = 156/403 (38%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +    L+   +Q ++  ++ V++D+R I  G +FVA+ G + D H F  QA  
Sbjct: 1   MISITLRQAATVLNG-ELQGQDLTVDAVTTDTRKITPGCLFVALKGERFDAHDFADQAKE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P LVV +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRKLDI---------DLPQLVVKDTRQAFGELAAWVRQQVPTRVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            T                    +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTEE-------------HEYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +D  +  A    NL   H++   + +    AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVDLTRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYGG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+     D D L P
Sbjct: 217 MNADNNDWLNWQNIIGSRKTWRFSPNAANSDFSATNIHVTSHGTEFTLKTPTGDVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +    +   +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATHDAIKTGLLNLKAVPGRLFPIQLAEKKLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV      GD  +     +G  A
Sbjct: 337 VGSMTAAVQVLSEMPGYRVMVVGDMAELGDESEACHIQVGDAA 379


>gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
 gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
          Length = 460

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 90/412 (21%), Positives = 152/412 (36%), Gaps = 32/412 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EALSQHLSAHRVGDDITIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G  +            TP                     + A+  
Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPE-------------DKYGVFELGANHK 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +    ++       N+G  H++   +Q     A        L     AII ADDA+
Sbjct: 165 GEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGVAQA-KSEIYNHLQSGGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLP 307
           +  +  +A        S         +  +   H        +  ++  G+  +   PL 
Sbjct: 224 ADVMRVKAKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLA 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G  QV NAL AA +CIA+G+    + E L +L  V GR +          I   Y     
Sbjct: 284 GRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGRV-RLIDDSYNANPV 342

Query: 368 SLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
           S+   +  ++ I+  R +V+   G  GD        +G++A     D    T
Sbjct: 343 SVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394


>gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium wasabiae WPP163]
          Length = 453

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 94/455 (20%), Positives = 167/455 (36%), Gaps = 43/455 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS          
Sbjct: 19  GENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I ++ G   
Sbjct: 70  RLHIDVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L +  +         + + A+  G   +  D ++ 
Sbjct: 130 YTAGNFN----------NDIGVPLTLLRLTAE---HQFAVIELGANHIGEIAYTTDLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F  L       +    + +    +   H   
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHWQVTLNHKTV 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R               V  +    + T+     D   L PLPG   V NAL A  L ++
Sbjct: 237 WRFSPQAACNIDFFASDVAVLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATALAMS 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G     V   L +L  VPGR   +  +     +   Y     S+    + +  +   R+
Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLADMPGYRV 356

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALDLA--DIA--------IVTDDNPRSEDPEKIRAEI 432
           +VV   G  GD        +G+ A  +A  D          +++  N   E      A I
Sbjct: 357 MVVGDMGELGDDAPECHRQVGE-AARVAGIDCVLSVGTLSKLISQSNGNGEHFHDKAALI 415

Query: 433 --------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                    H +   + KG+R  A+   +  L + 
Sbjct: 416 SRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQEN 450


>gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
 gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
          Length = 460

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 90/412 (21%), Positives = 152/412 (36%), Gaps = 32/412 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EALSQHLSAHRVGDDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I        +  G  +            TP                     + A+  
Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPE-------------DKYGVFELGANHK 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +    ++       N+G  H++   +Q     A        L     AII ADDA+
Sbjct: 165 GEIDYTSSLVRPHVALVNNVGSAHLEGFGSQAGVAQA-KSEIYNHLQSGGTAIINADDAF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLP 307
           +  +  +A        S         +  +   H        +  ++  G+  +   PL 
Sbjct: 224 ADVMRVKAKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLA 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G  QV NAL AA +CIA+G+    + E L +L  V GR +          I   Y     
Sbjct: 284 GRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGRI-RLIDDSYNANPV 342

Query: 368 SLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
           S+   +  ++ I+  R +V+   G  GD        +G++A     D    T
Sbjct: 343 SVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394


>gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 458

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 168/467 (35%), Gaps = 40/467 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +
Sbjct: 10  EQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +          N P++ V++T   L + A     +    ++ VTG++GK+S    
Sbjct: 70  WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDI 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  +           G  +               P+ +    +   +  V  + +  SS 
Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    +++A   AK+ +   L            D  
Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N     ++ G      +      +            ++  F  P+ G+  V
Sbjct: 229 LLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +    + IVV G     GD++      +GK+        + T          K+
Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--------YGKL 400

Query: 429 RAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 401 GAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRG 447


>gi|315226730|ref|ZP_07868518.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
 gi|315120862|gb|EFT83994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
          Length = 549

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 188/534 (35%), Gaps = 54/534 (10%)

Query: 3   LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++LI        L +  S           + ++ DSR I +  + V   G +     ++
Sbjct: 27  LRELIAGEVWADSLESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFHS-SYL 83

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA A G    V    +S    +         ++V + R+ L+L ++  YG  P + L V
Sbjct: 84  DQADALGLPCYVAQEDFSSATKALG-------IIVTDVRQALALLSAAFYGD-PASQLKV 135

Query: 121 TGTSGKSSVASFVQQICQ----RSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            G +G     +            SG  +  +         +   ++ LTTP  + L + +
Sbjct: 136 VGITGTKGKTTTAYFTHAILSAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMM 195

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-------QQAYF 227
                 G+ ++ +E SS      R+ G+++  G+F N+  DHI   +             
Sbjct: 196 RQAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQ 255

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKE-----VMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            A       +    + A + A+DA +              +G          +   L  V
Sbjct: 256 IAANSDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASLPTV 315

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPG-----EFQVYNALVAAGLCIAIGIDSAL----VL 333
            A       T+     D              +F   NA  A  +  ++G+D         
Sbjct: 316 TASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAIAQA 375

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGC 390
               +   + GR E   ++ +G    VDYAH   S   +L  +         RII+V G 
Sbjct: 376 LEAMEKVTISGRME-TFSSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIILVTGS 434

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NR- 445
            G++   +R  + + A D     I T+++  +E  E+I  ++   +     +     +R 
Sbjct: 435 AGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGIVLDRT 494

Query: 446 ---IEAIRTAIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               EA+R A     +    V++  GKG+E      N       D  ++  +L 
Sbjct: 495 HALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKVLSRLLE 548


>gi|294787078|ref|ZP_06752332.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
 gi|294485911|gb|EFG33545.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
          Length = 546

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 188/534 (35%), Gaps = 54/534 (10%)

Query: 3   LQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L++LI        L +  S           + ++ DSR I +  + V   G +     ++
Sbjct: 24  LRELIAGEVWADSLESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFHS-SYL 80

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA A G    V    +S    +         ++V + R+ L+L ++  YG  P + L V
Sbjct: 81  DQADALGLPCYVAQEDFSSATKALG-------IIVTDVRQALALLSAAFYGD-PASQLKV 132

Query: 121 TGTSGKSSVASFVQQICQ----RSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKAL 174
            G +G     +            SG  +  +         +   ++ LTTP  + L + +
Sbjct: 133 VGITGTKGKTTTAYFTHAILSAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMM 192

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT-------QQAYF 227
                 G+ ++ +E SS      R+ G+++  G+F N+  DHI   +             
Sbjct: 193 RQAVDAGMEYLVMEVSSQAYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQ 252

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKE-----VMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            A       +    + A + A+DA +              +G          +   L  V
Sbjct: 253 IAANSDNLVMNATMAHASLVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASLPTV 312

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPG-----EFQVYNALVAAGLCIAIGIDSAL----VL 333
            A       T+     D              +F   NA  A  +  ++G+D         
Sbjct: 313 TASPLDPDPTLGFRISDGQGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAIAQA 372

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGC 390
               +   + GR E   ++ +G    VDYAH   S   +L  +         RII+V G 
Sbjct: 373 LEAMEKVTISGRME-TFSSPQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIILVTGS 431

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NR- 445
            G++   +R  + + A D     I T+++  +E  E+I  ++   +     +     +R 
Sbjct: 432 AGNKAYDRRQEIVQAAQDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGIVLDRT 491

Query: 446 ---IEAIRTAIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
               EA+R A     +    V++  GKG+E      N       D  ++  +L 
Sbjct: 492 HALEEAVRDAARHQEEGGMTVILAIGKGNERWIKHLNKHVAYEGDDKVLSRLLE 545


>gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 454

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 176/468 (37%), Gaps = 40/468 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            +Q++I     E+I       ++  +   N++S+D+R I+   +FVA+ G   +G+ +  
Sbjct: 4   NIQEVIEAVNGEII-------VKNNDGHFNKISTDTRKIENDNLFVALKGANFNGNTYAV 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA  ++V     ++     ++S   ++ V +T+  L   A     K    ++ +T
Sbjct: 57  SAIEKGASVVIVD---EIKFEKEDLKSKGTVIKVKDTKVALGDLARYYRKKLGIKVVGIT 113

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    +              G  +                I L   +  L+   
Sbjct: 114 GSTGKTSTKDLIAAFLSGKYKVFKTQGNFNNE--------------IGLPLMIFELNKDY 159

Query: 182 VTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V    +S+  + + L GI      + TN+G  HI+Y +T++     KM + +     
Sbjct: 160 DVAVLEMGTSNFGEINTLAGIALPDIAAITNVGVAHIEYLKTRENILKEKMSISDFFKDD 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I   +D   K V    H       +   +   ++ K +             + +  
Sbjct: 220 SCLVINCEND-MLKTVKDEDHKNINIQRTGYDKSYNLYAKNIELTSETTSFDAVYKDECH 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   + GE  V NAL+   +   +G+    + + L+       R EF+  N     I  
Sbjct: 279 RFNLNMVGEHNVLNALLGIQISKDLGLKFEEMEKGLDNFKATSMRLEFIKHNKF-TIIND 337

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y    +S++  +  +++ T  R I V G     GD        +G+ A   ADI + T 
Sbjct: 338 SYNANPDSMKAAINVLKSYTGDRKIAVLGTMGELGDYANIAHKEVGEFAKGKADILLTTG 397

Query: 418 DNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   S            G     +    + + I++   M+  +D ++V
Sbjct: 398 EYKDS---------YKEGFGTNTLVFDTKDDLIKSLNSMIKDEDTILV 436


>gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
 gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
          Length = 458

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 172/476 (36%), Gaps = 42/476 (8%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K+ A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRG 447


>gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
 gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
          Length = 452

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 100/465 (21%), Positives = 176/465 (37%), Gaps = 40/465 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +++             K  +VS+D+R I++G++FVA+ G+  DGH FI  AI +GA 
Sbjct: 5   TLSQVVEATQGTSAHTDNIKFLDVSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKGAT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +V    ++             + VDNT       A     +    ++A+TG+SGK++ 
Sbjct: 65  GAIVEKGRAV--------DGIVCIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTT 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                       + +  +G    +    ++       P  L +  +   +       VE 
Sbjct: 117 KE----------MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTADHQAC-----VVEM 161

Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              GL Q     +      G  TN+G  HI+   +++A   AK  L    LP+ S AI+ 
Sbjct: 162 GMRGLGQIEELALIAEPTMGIITNVGTSHIELLGSREAIAQAKGELIRC-LPENSVAILN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD Y K +   +   G  +     +        +    +  + T     + FD   P+ 
Sbjct: 221 EDDPYVKAM--DSLAKGKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMI 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  VY+AL A      +GI S  + + L +    P R E V        +   Y    +
Sbjct: 279 GEHNVYDALAAIVAGRVLGIKSNTIRKGLSEFTGTPMRQEIVPFEDI-VILNDAYNANPS 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S+   +K +  +   R I + G     GD  +     +G++  +     + T      + 
Sbjct: 338 SMAEAIKALGQLEGKRKIAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFT----FGDA 393

Query: 425 PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I  E    G+  F    +   A   + ++  K DV++V  KG
Sbjct: 394 AAFIAKEAKKAGLTTFRCNSHLEMANAYS-DIREKGDVILV--KG 435


>gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli]
          Length = 452

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALTAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Pantoea ananatis AJ13355]
          Length = 452

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 156/405 (38%), Gaps = 26/405 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +++   +   +  +N+V++D+R + AG +FVAIVG + D H F   AIA+G +A++VS
Sbjct: 9   LAEIASGTLHGDDLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDAIAKGVKALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  + P +VV +TR      A+ +  +    ++A+TG+SGK+SV     
Sbjct: 69  K---------HLPVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G +    G  +            TP                   + + A+  G 
Sbjct: 120 SILRQCGETLHTAGNLNNDFGVPMTLLRLTPE-------------HQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++  A    NL   H++   + +    A        LP    AI+ AD     
Sbjct: 167 IAYTTDLVRPEAALVNNLAAAHLEGFGSLEGVAKA-KGEIFYGLPARGTAILNADSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S            +    +     +     + D + PLPG   + N
Sbjct: 226 RWQENLHGKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMHTPRGEADIILPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +++    + V   L++L  VPGR   V  +     +   Y     S+    +
Sbjct: 286 ALAAAALALSVDAPLSAVQAGLKRLQSVPGRLFPVRLSEHQLILDDSYNANVGSMVAAAQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
            +  +   R++VV      GD  +     +G  A     D  + T
Sbjct: 346 VLSEMPGYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLST 390


>gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
 gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
          Length = 458

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 164/478 (34%), Gaps = 31/478 (6%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I K   EL   + +      +++  I  VS DSR I+ G +F+   G K DGH F+  A
Sbjct: 1   MINKSLGELAKMIKVENDLSAFQDVAIGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A +                  PI++V+N+ + L   A+    +    ++ +TG+
Sbjct: 61  IKSGAAASLWEKDVPNP------PEGLPIIIVENSLQALQNLATAYRHELGIKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +           G  ++              P+ +    +      V 
Sbjct: 115 NGKTTTKDMVANLLSLKYKVQKTQGNFNSH----------IGLPLTIL---ALEKGTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +   +     A   TN+G  H+    +++    A        L ++  
Sbjct: 162 VLEMGMSGFGEIEQLSNIALPDAAIITNIGESHLQDLGSREGIATA-KMEIISGLKEDGL 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y ++   KE + +           G +     L              +    +    
Sbjct: 221 FVYYGEEPLLKERIDKDWKFKVETFGKGTENTLYPLDVKTTDSGSVFKVNAEPDTEVM-- 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ GE  V NAL +  +     ++   + E  ++L +   R E +        +   Y 
Sbjct: 279 LPVLGEHNVMNALASMLVAKEFDVEYKEMPEAFQQLKLTQMRMEMMEGKRGEKILNDAYN 338

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S+   +  +  +   G+ I+V G     G  ++     +G+         + T   
Sbjct: 339 ASPTSMRAAIGLLSGLQGYGKKILVAGDMLELGPNEENYHYEVGQEVQKGKIDLVFTFGT 398

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476
              +        I  G        ++ E       +L+  ++++  A +G +   I+ 
Sbjct: 399 LARQTARGAAENI--GEKNVFSFDDKQELTEKLESILHGDEIILFKASRGMKLEEIIE 454


>gi|307111173|gb|EFN59408.1| hypothetical protein CHLNCDRAFT_137921 [Chlorella variabilis]
          Length = 873

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 106/569 (18%), Positives = 188/569 (33%), Gaps = 113/569 (19%)

Query: 23  MQWRERKINEV-SSDSRHIQAGWIFVAIVGN--KEDGHLFIPQAIAQGAEAIVVSSAYSL 79
               +  I  + + +S       ++V +     + DGH +  +A   GA A++       
Sbjct: 283 ASAPDVDIRNILTCNSISGGEDSLYVCVPSADGQCDGHDWADEASEMGAVAVIAGRPLPD 342

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQIC 137
                 +  +            L   A   Y +    +  + V G+ GK++ A   + + 
Sbjct: 343 ALLPVVVVDDV--------AAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSRGMF 394

Query: 138 QRSGLSSFQIGPTST---------------------------------------ISSFAQ 158
           + +      IG                                                 
Sbjct: 395 EETAERCGMIGTIEYALEEVRLTEEGEVWVAEEQDVTLQAGGGLRDCSSPFHITPYEGKY 454

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG---RD 215
               TTP  +++ KAL+  + +G +   VE     L   R D +      +TN       
Sbjct: 455 PQVPTTPDALHMQKALAGCADRGASVALVECDPASLGDGRADHVDFDVLVYTNSYAEKEA 514

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR--VLSVGYQ 273
             +          A++    +   +   A+I  DD    E+ + A  AG      S   +
Sbjct: 515 GAEGGSQACHDRVAELFRRVQGDVERQRAVINIDDPLGAELAQAAAAAGATVLTYSADSR 574

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              I+ +K  +   + +V ++        + PL G   V N L A    IA G+    ++
Sbjct: 575 DADIYAEKAKSSIWETEVLVNTPLGRLQIITPLLGRSNVCNVLAAVSTGIACGVPLKNIV 634

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             +E + ++PGR E +    +   + VD A T   L  +L  ++   S R+++VFGC G 
Sbjct: 635 AGIEAVDIIPGRCEII-DEGQPFSVVVDSASTPEQLSRLLDEVKEAGSKRVLLVFGCPGT 693

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---------------- 437
                      +A    D   +T+D+P +  P  + A+++ G+P                
Sbjct: 694 ---------TSMAHYKGDAIFITNDSPGASWPSDVIADMVGGLPTEVTNKYTGTAYPFLQ 744

Query: 438 --------------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                               G     +R +AIR AI M   +DV+VVAGKGH       +
Sbjct: 745 DPHRVPHWFQKYMLQYQSVVGVYVIEDRFQAIRVAIGMARARDVVVVAGKGHIDWQEYWD 804

Query: 478 GE----------KKMSVDCDIIREILGLI 496
           G           K    D    R  L  +
Sbjct: 805 GAEFDLEERTTLKSWFDDRVECRNALSKL 833


>gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
 gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
          Length = 460

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 172/463 (37%), Gaps = 32/463 (6%)

Query: 11  FPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E+    +   +  ++  +   VS DSR I+   +F+A+ G + DGH F+  A  +GA 
Sbjct: 6   FNEIKKATNAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+++S      +    I  +  + +V +T+K     A     +    ++AVTG++GK++ 
Sbjct: 66  AVIISD----SECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +              +     +      T                    V +  
Sbjct: 122 KDMISALLSSKFNVCSTEKNNNNEIGLSLTLLNITKE-------------HDACVVEMGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G  +   +  K   G  TN+G  HI    +++    AK  L +  LP+   A++  D
Sbjct: 169 RGFGQIKELCNIAKPTIGVITNVGTSHIGILGSKENIAKAKGELIQS-LPENGIAVLNGD 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D++ K++ +            G     ++ +KV   +   + T     + F     L G 
Sbjct: 228 DSFVKKMGENFKGRVIYYGLNG--NYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGI 285

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VY+AL A      +G+D   +   L       GR + +   +    I   Y     S+
Sbjct: 286 HNVYDALAATSTARILGVDVTKIQRVLSDFSPRAGR-QSLIEINGIKIIDDAYNANPLSM 344

Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           EM L++++ I++    +V       G+ ++     +G  A D+    I+T  +      +
Sbjct: 345 EMALRSLKQISAKNKYLVLADMKELGENEEKFHYEIGLKAADMGFCGIITVGDL----AK 400

Query: 427 KIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I       G+          EA    + +    DV ++  KG
Sbjct: 401 FIAKGAKEKGMKMIYSFDTCKEAAECILNIAKAGDVFLL--KG 441


>gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
 gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
          Length = 272

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 26/237 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +     +I  +  DSR I +G +F+ + G   DG     
Sbjct: 16  KLKELANLLMIK-------ETIGDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLEDR 66

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG     
Sbjct: 67  HQFVEDAVKNGAVALIVERDINIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 117

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK++ +  +++I    G     +G     + S      + T  P  L + 
Sbjct: 118 MKLIGITGTNGKTTTSYLIEKILSDYGYHMGLMGNNGVKVGSKWYSTDINTQEPPTLQRN 177

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH T   Y + K
Sbjct: 178 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHGTFDEYKHVK 234


>gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
 gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
          Length = 459

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 171/468 (36%), Gaps = 40/468 (8%)

Query: 10  DFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              E++  +S   +Q    +    V++D+R I  G +F+A+ GN  DGH F+  A   GA
Sbjct: 5   TLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPGELFIALQGNTFDGHHFLNDACINGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +++S   S +    T      +++V NT+  L   A     K    ++AVTG++GK++
Sbjct: 65  SMVIISERSSFKAVPRT----VSVILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +  +              +     +      TP                   V + 
Sbjct: 121 TKNMIAALVASKLNVCATQKNFNNEIGLSLTLLSMTPE-------------TEACVVEMG 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
               G             G  TN+G  HI    +Q+    AK  L E  LP +  AI+  
Sbjct: 168 MRGLGQIAELCRIAAPTIGVVTNVGTSHIGILGSQENIAKAKGELIES-LPDKGIAILNE 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y   +              G     +H  ++   +N  +   +   + F     + G
Sbjct: 227 DDPYVIRMGDTFSGNIIGYGVNG--NYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              VYNAL A      +GID   + + L +      R +F    +    I   Y     S
Sbjct: 285 IHNVYNALAATATARVLGIDVNRIQKALSEFLPGAQR-QFFTEINGVTVIDDSYNANPLS 343

Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +EM    +R +      +V G     G++++     +GKIA ++    ++T         
Sbjct: 344 MEMAFHAMRQVNGKHYFLVLGDMGELGEKEEQFHYELGKIAANIGFDGMIT--------V 395

Query: 426 EKIRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            K+   I       G    +E     +A +   +M+   DV++V  KG
Sbjct: 396 GKLSRHIAMGARDAGKTNIMECTTCEDAWQRLQKMIQSGDVVLV--KG 441


>gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 315

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 95/318 (29%), Positives = 143/318 (44%), Gaps = 9/318 (2%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++  SR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GLDQ R   +    G  TNL RDH+DYH T +AY  AK +LF     K     +  DDA+
Sbjct: 180 GLDQGRATALAFDVGVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINL--DDAF 237

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E+      +     S      +++ +      +  + T+     +      L G F +
Sbjct: 238 GRELAGIKQESRLITYSQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNL 297

Query: 313 YNALVAAGLCIAIGIDSA 330
            N L A G  + +     
Sbjct: 298 SNVLSAVGALLGLDYALD 315


>gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
 gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
          Length = 454

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/470 (18%), Positives = 168/470 (35%), Gaps = 42/470 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     +L            +    I+ VS+DSR I    +F+A+ G + D H F  Q 
Sbjct: 1   MISLTLAQLAQITQGQIESAPDTNVLISSVSTDSRKIAENCLFIALKGERFDAHDFAQQV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA+A++V            +  + P ++V ++R  +   A+ +  +    I+ +TG+
Sbjct: 61  VVTGAKALLVERK---------LNVDCPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGS 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           SGK+SV      I    G + +  G   + I       RLT      + +  +   ++  
Sbjct: 112 SGKTSVKEMTASILSERGKTLYTAGNLNNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIA 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              ++      L                NL   H+    + +    AK  +++ +  + +
Sbjct: 172 YTTNIVKPEAAL--------------VNNLFAAHLAGFGSPEGVATAKGEIYQGVPEEGT 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D+YS++   +                  +   +          +       D 
Sbjct: 218 AIV--NLDSYSEKWQFQPRQTVWYYSLTSQAKADFYPSDIQVKQLTTDFVLHTPVGSVDI 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG   + N L A+ L I++G     +   + K   VPGR   V  +     +   Y
Sbjct: 276 TLPLPGRHNIANVLAASALAISVGASLEDIKNGIAKTQAVPGRLYPVRLSEHKVVLDDTY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIAIVTDD 418
                S+   ++ +  +   RI+VV   G  GD  +     +G +A   A  D       
Sbjct: 336 NANDGSMIAAIQVLEKMPGYRILVVGDMGELGDYAEDCHQRVG-VAAKQAGLDKVF--SV 392

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              SE    + ++       F  K +    +   I +  ++DV+ +  KG
Sbjct: 393 GQLSE----LISQFSECGEHFTVKADL---LTRLIPLAQQKDVVSILVKG 435


>gi|158834106|gb|ABW81858.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 297

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 99/294 (33%), Positives = 138/294 (46%), Gaps = 10/294 (3%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH
Sbjct: 7   ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFAAVVFTNLSRDHLDYH 66

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y  AK +LF     KE      ADD   +  + +  +A    +       +    
Sbjct: 67  GDMARYKAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124

Query: 281 ----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +        +       +   +  L G F V N L+A    +A+      ++  +
Sbjct: 125 LETKNINYHAQGITLRFDSSWGEGRLVSRLLGAFNVSNLLIALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDRPT-VIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIE 447
           GKR +MG IA   AD  +VTDD+PR+EDP  I A+I+ G   I   +   NR E
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDSPRTEDPGVIVADILSGLVEIRHAVVIHNRAE 297


>gi|257456337|ref|ZP_05621534.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446423|gb|EEV21469.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 202

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 12/195 (6%)

Query: 312 VYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           +YN L A   +    G+    ++  L++L  V GR   V    +   + +DYAHT +S +
Sbjct: 1   MYNILAALIAVHNLTGLPLDELVPLLKRLVPVKGRMCRV-EAGQDFEVIIDYAHTPSSFQ 59

Query: 371 MILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +I+  +R       GR+I VFG GG+RD  KRP  G+IA +  D  I+TD++PR EDP +
Sbjct: 60  LIMPPVRERIKAKGGRVIAVFGSGGERDTVKRPEQGRIAAEYCDTIILTDEDPRGEDPVE 119

Query: 428 IRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           +   I  G P            +R  AIR A  +    D +++ GKGHE   I  +G   
Sbjct: 120 LLEMIAEGCPDKKRGEELFIIPDRPTAIRKAFSLAQANDAVLLLGKGHENSIIGKDGAVP 179

Query: 482 MSVDCDIIREILGLI 496
              +    +  L  +
Sbjct: 180 Y-NEYTEAQNALREM 193


>gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
          Length = 455

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/453 (15%), Positives = 136/453 (30%), Gaps = 52/453 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L        +  I+ V+ DSR +    +FV + G + DGH FI
Sbjct: 1   MKMQ------LAEIAKALDTTIEGNSDPVISSVAFDSRKLNENSLFVPLKGER-DGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A +    +  +        N P++ VD+T   +   A     K    ++ +
Sbjct: 54  NSAIANGAVATLWEKGHPNK------PGNFPLIEVDDTLAAMQELAKYYLNKVNPAVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPMTILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSSLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   ++  ++                   +  +         +      + 
Sbjct: 214 DGEFIYNGDEPLLRQRAEKITQVKSTFG----FSDQDTIHALEFKSYMHHASFVTNSSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R ++   +     +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAICVGHHFGESDDEIAASLSDFTPTANRMQWRKGDVGEDIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     + + +L +   +     GR I V G   +       +   +A  L        
Sbjct: 330 IYNSNPTAAKAVLTSFGQVEVPEGGRRIAVLGDMLELGAASAELHASLADKL-------- 381

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                 DP  I    ++G     E  N  EAI+
Sbjct: 382 ------DPLVINEVYLYG----PEMKNLEEAIK 404


>gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 244

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 26/237 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG----- 56
           KL++L      +         +     KI  +  DSR I  G +F+ + G   DG     
Sbjct: 9   KLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDR 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG     
Sbjct: 60  HQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSNK 110

Query: 117 I--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKA 173
           +  + +TGT+GK++ +  +++I    G  +  +G     + S      + T  P  L + 
Sbjct: 111 MKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRN 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           L  + +Q   +  +E +S GL   R+ G       FTNL +DH+DYH+T   Y + K
Sbjct: 171 LQMMKNQNADYCVMEVTSQGLHMERVKGCNFKIAVFTNLTQDHLDYHETFDEYKHVK 227


>gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 511

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 169/422 (40%), Gaps = 30/422 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL+ ++       ++ +       +E +I  ++  +  +  G IFVAI G   DGH FI
Sbjct: 1   MKLEKILNN-----LDIIDANFEIDKEIEIKNIAFHTDDVVEGGIFVAIKGYVTDGHKFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A   GAE  VV               N   + V+N+R  L+  A   Y    +  N++
Sbjct: 56  KKARELGAEIAVVED---------YSEENIKQIRVENSRIALADMARNFYEDPSKDMNVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYL 177
            +T T+GK++ A  V  I +    ++  IG   T  +     + LTTP  + L      +
Sbjct: 107 GITATNGKTTTAFMVNSILEEDKRNTGIIGTVLTRYADVMIPSVLTTPESLTLQSYFRDM 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +GVT V++E SS   + +R   I     +F NLGR+HID H + + YF          
Sbjct: 167 KDKGVTDVTMEVSSSAQELYRNKNIDFDIVTFNNLGREHIDQHGSFENYFR-FKSRLIRH 225

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVL-SVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             +++ AI+ ADD     +  +                  I    + +   K    I+ +
Sbjct: 226 AKEDALAILNADDEKIYSLRDKTKAQVLSFSLESNDAEFGIQDLDLSSGKGKFTFKINRD 285

Query: 297 GK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            K         +F+      G   V N+LVA  + + + ID+  +   L+    V  RFE
Sbjct: 286 IKIKDFILEKSEFNIELGSVGYSSVMNSLVAIIIGLCLKIDTETIKRALKNFKGVERRFE 345

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +        I  D+     +++  ++ ++ +    + +++   G R       + +  +
Sbjct: 346 LIFDEEFK--ILDDHFANEKNIDATMETLKEMDYKNLNILYAIRGKRGVEVNREITERLV 403

Query: 408 DL 409
             
Sbjct: 404 KW 405


>gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 458

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 172/476 (36%), Gaps = 42/476 (8%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTRLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K+ A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRG 447


>gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
 gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
          Length = 458

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 172/476 (36%), Gaps = 42/476 (8%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K+ A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDAKDVVLVKASRG 447


>gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens 200]
          Length = 460

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 165/467 (35%), Gaps = 50/467 (10%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E+++Q         +  I ++SSDSR +    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EVLSQHLGAHRVGNDVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +L         N P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAL---------NIPQLIVADCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  I        +  G   + I       RLT      + +  +                
Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKG------------ 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +     G+     +  N            QA            L  +  AII ADDA
Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306
           ++  +  +A        S         +  +   H        +  +   G+  D   PL
Sbjct: 223 FADVMSVKARPYKQLHFSQQEGAAKRRIDVIATGHKADADGCYRFMLKYLGESCDVKLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV NAL AA +CIA+G+    +   L +L  V GR +          I   Y    
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQLGRI-RLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTD------ 417
            S+   +  ++ I+  R +V+   G  GD        +G++A     D    T       
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHT 401

Query: 418 ----DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIE 454
                    E    +  ++I  I         + KG+R  A+   ++
Sbjct: 402 SQAFGAEHHESVAVLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVD 448


>gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
 gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
          Length = 460

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/462 (18%), Positives = 164/462 (35%), Gaps = 34/462 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +        +W    ++ VS+D+R IQAG ++V ++G   +GH F+ +A  +GA A++ +
Sbjct: 12  MTGGRYANPEWGNIAVSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKGAAAVLWA 71

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A        T   + P +VVD+T   L   A+R   +    ++ VTG++GK++    + 
Sbjct: 72  EA------EGTPPESVPAIVVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKDMIA 125

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +           G  +               P+ L    +      +  V +  S  G 
Sbjct: 126 ALLSSQYRVQKTEGNLNNH----------IGVPLTLL---ALEEGTDIAVVEMGMSGFGE 172

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            +      +  A   TN+G  H+    +++    AK+ +   L            D    
Sbjct: 173 IEQLTTIARPNAAVITNIGEAHLQELGSREGIAKAKLEILSGLQGDGLFVYH--GDEPLL 230

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +  +      V++ G      +      I       +  E        P+ G+  VYN
Sbjct: 231 AELVPSLPLPQHVVTFGEGEDNDYYPTTVRIEAAGTSFVINELPRQTLFIPVLGKHHVYN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  +    G+    +   L +L V   R E V T      I   Y  +  S+   L 
Sbjct: 291 ALAAIAVARFFGVSWENIAAALSRLQVTRMRTEVVKTKRGFTVINDAYNASPTSMRAALM 350

Query: 375 NIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVTDDNPRSEDPEKIR 429
            +  +    + I V G     GD++      +G++   ++ D         R      I 
Sbjct: 351 LLTELDGYRKKIAVLGDMLELGDKEVEFHQAIGEMLRPEMVDYVFTYGPLARH-----IA 405

Query: 430 AEIIHGIPGFIEKG-NRIEAIRTAI-EMLNKQDVLVV-AGKG 468
                       K  +   A+  A+  +    D++++ A +G
Sbjct: 406 TAATPFFDQGQVKAFDDKAALAEAVLSVATPDDIVLLKASRG 447


>gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
          Length = 460

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 171/463 (36%), Gaps = 32/463 (6%)

Query: 11  FPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           F E+    S   +  ++  +   VS DSR I+   +F+A+ G + DGH F+  A  +GA 
Sbjct: 6   FNEIKKATSAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+++S      +    I  +  + +V +T+K     A     +    ++AVTG++GK++ 
Sbjct: 66  AVIISD----SECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +              +     +      T                    V +  
Sbjct: 122 KDMISVLLSSKFNVCSTEKNNNNEIGLSLTLLNITKE-------------HDACVVEMGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G  +   +  K   G  TN+G  HI    +++    AK  L +  LP+   A++  D
Sbjct: 169 RGFGQIEELCNIAKPTIGVITNVGTSHIGILGSKENIAKAKGELIQS-LPENGIAVLNGD 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D++ K++ +            G     ++ +KV   +   + T     + F     L G 
Sbjct: 228 DSFVKKMGENFKGRVIYYGLNG--NYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGI 285

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VY+AL A      +G+D   +   L       GR + +   +    I   Y     S+
Sbjct: 286 HNVYDALAATSTARILGVDVTKIQRVLSDFSPRAGR-QSLIEINGIKIIDDAYNANPLSM 344

Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           EM L++++ I++    +V       G  ++     +G  A D+    I+T  +      +
Sbjct: 345 EMALRSLKQISAKNKYLVLADMKELGKNEEKFHYEIGLKAADMGFCGIITVGDL----AK 400

Query: 427 KIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I       G+          EA    + +    DV ++  KG
Sbjct: 401 FIAKGAKEKGMKMIYSFDTCKEAAECILNIAKAGDVFLL--KG 441


>gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
 gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
          Length = 478

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 167/463 (36%), Gaps = 35/463 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++
Sbjct: 12  DAAAWMAGAHLAGPDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 71

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS   +         +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 72  VSRPPAA----TLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVE 188
           +  I  ++     ++      ++           P+ L +  +         G+ H    
Sbjct: 128 ISAIFAQAVGEDARLATAGNFNNDI-------GLPLTLFRLNAQHKLAVLELGMNHPGET 180

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A    + Q  +  I        N  R+H ++  + +A       +   L           
Sbjct: 181 AVLAAIAQPTVAMI-------NNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRD 233

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                +        AG R +             V    + Q++ +   G+ F    PL G
Sbjct: 234 AANGGEYARVWKAAAGSRRVLDFGMDAGAVTGTVVDTADGQRIEVQAPGQRFVITLPLLG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NAL A    +A G+   ++ + L     V GR +       G  I   Y    +S
Sbjct: 294 LHNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGGLVIDDTYNANPDS 353

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDP 425
           +   +  + T+ + R +V+   G  G +       +G  A     D  + T      E  
Sbjct: 354 MRAAIDALVTLPAPRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLAT-----GELA 408

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    G   F    +    I   +  +     ++V  KG
Sbjct: 409 RHTVDAFGPGAQHFASAEDL---IEHGVPAIAPAATVLV--KG 446


>gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
 gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
          Length = 478

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 168/463 (36%), Gaps = 35/463 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++
Sbjct: 12  DAAAWMTGAHLAGPDAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 71

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A +         +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 72  VSRAPAA----TLDVTNVAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVE 188
           +  I  ++     ++      ++           P+ L +  +         G+ H    
Sbjct: 128 ISAIFAQAVGEDARLATAGNFNNDI-------GLPLTLFRLNAQHKLAVLELGMNHPGET 180

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A    + Q  +  I        N  R+H ++  + +A       +   L           
Sbjct: 181 AVLAAIAQPTVAMI-------NNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRD 233

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                +        AG R +             V    + Q++ +   G+ F    PL G
Sbjct: 234 AANGGEYAPVWKAAAGSRRVLDFGMDAGAVTGTVVDTADGQRIEVQAPGQRFVITLPLLG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NAL A    +A G+   ++ + L     V GR +       G  I   Y    +S
Sbjct: 294 LHNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGGLVIDDTYNANPDS 353

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDP 425
           +   +  + T+ + R +V+   G  G +       +G  A     D  + T      E  
Sbjct: 354 MRAAIDALVTLPAPRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLAT-----GELA 408

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    G   F    +    I   +  +     ++V  KG
Sbjct: 409 RHTVDAFGPGAQHFASAEDL---IEHGVPAIAPAATVLV--KG 446


>gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 458

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G +++ I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K+ A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447


>gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 458

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K+ A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447


>gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
 gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
          Length = 458

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K+ A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447


>gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 452

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 148/386 (38%), Gaps = 25/386 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +  ++  I+ V++D+R + AG +FVA+ G + D H F  QA   GA A++V+    +   
Sbjct: 17  LHGQDLTIDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKENGAGALLVNRKLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +TR      A+ +  + P  ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            T                    + + A+  G     +   
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTKE-------------HDFAVIELGANHQGEIAWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A    NL   H++   + +    AK  ++   LP    AI+ AD+           +
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTG-LPDNGIAIMNADNNDWLNWQSIIGS 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 S            +    +  + T++      + L PLPG   + NAL AA L 
Sbjct: 234 RKTWRFSPNAADSDFTATHIHVTSHGTEFTLNTPTGGIEVLLPLPGRHNIANALAAAALS 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G     +   L  L  VPGR   V        +   Y     S+   ++ +  +   
Sbjct: 294 MAVGATHDAIKTGLANLKAVPGRLFPVQLAENKLLLDDSYNANVGSMTAAVQVLSEMPGY 353

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA 406
           R++VV      GD  +     +G+ A
Sbjct: 354 RVMVVGDMAELGDESEACHIQVGEAA 379


>gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 465

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 184/481 (38%), Gaps = 52/481 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L  +D  +    + +    +++ K++ +S+DSR+I+   +F+A+ G K DGH F+
Sbjct: 1   MSL-NLTVEDILKATKGI-LIKGNFKD-KVDSISTDSRNIKKDDVFIALKGEKFDGHEFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA+ ++VS   +L+D +        I+ V +T K L   A+         ++ +
Sbjct: 58  KDAILKGAKGVIVSRDVNLEDKAF-------IIKVQDTLKALQDIANYYLKTLNAKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + V ++ +  G           +S    +N +  P  I     L      
Sbjct: 111 TGSSGKTTTKNLVGRLLKLIGKV--------YVSKENFNNEIGVPLSI-----LEAEKDV 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G         +   G  TN+G  HI    +++A   AK  +F+  + +
Sbjct: 158 DFLVLEMAMRGKGEISLLSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFDY-IKE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+  DD++S ++ +R H                 +       +        +GK  
Sbjct: 217 DGIAILNRDDSFSMKIYERLHIKKYTFGFEEGSDLRGLILD-KGKESYTLGLYFPDGKRL 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+       N L A  +  +I  +S   ++      +   R +          I  
Sbjct: 276 TLSLPVYPLNIYRNLLSALLVLWSISPESIYRVKEDFDFTLPKQRLDVKRNKDGLVIIDD 335

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPI-MGKIALDLADIAIV 415
            Y    +S++  ++ +  +   GR + + G     G+         + ++     D+ ++
Sbjct: 336 TYNANPDSMKTAIEYLELLDVPGRKVALLGDMLELGNYSIEGHKEVIEEVLKRNIDVIVL 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKG-------NRIEAIRTAIEM-LNKQDVLVVAGK 467
                          E+   +  F +         +  E I++ +   L  +D +++  K
Sbjct: 396 YG------------QEMKKALDEFEKIDWSKVHWSDNPEEIKSILRRSLQPKDTVLI--K 441

Query: 468 G 468
           G
Sbjct: 442 G 442


>gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 475

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 164/479 (34%), Gaps = 47/479 (9%)

Query: 6   LIYKDFPELINQLSIFPMQ--WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   P      + K+   V  DSR ++ G +F A+ G   DGH +   
Sbjct: 1   MIPLSLTEITGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGEHVDGHDYARG 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++ +   S  D         P LVV +    +   A  +  +    ++A+TG
Sbjct: 61  AVEAGAVAVLATRPVSTPDAP------VPALVVPDVVAAMGAIARAVVERLGTTVVALTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G          +N +  P       AL   ++   
Sbjct: 115 SAGKTSTKDLIAQLLQRHGPTVWTHGS--------FNNEIGLP-----LTALRADTTTQH 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240
             + + A   G  ++  D      G   N+G  HI     ++    A  ++         
Sbjct: 162 LVLEMGARGKGHIRYLTDLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPSAED 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ ADD   + +  R           G            A   +   T+       
Sbjct: 222 GGVAVLNADDPLVRAMASRTKARTVLFGEAGD-AHVRASNVRLADGGRPAFTLHTPTGCG 280

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +    G+    +   L +       R E    +     + 
Sbjct: 281 DVTMRLYGEHHVSNALAAAAVAHETGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTVVN 340

Query: 360 VDYAHTSNSLEMILKNIRTITS----GRIIVVFGCG---GDRDQGKRPIMGKIALDL--A 410
             Y     S+   L+ +  + +     R   V G     GD    +   +G++A+ L  +
Sbjct: 341 DAYNANPESMRAALRALAAMGAATPGRRTWAVLGPMAELGDESLAEHDAVGRLAVRLNVS 400

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  V        +   +  ++     G      +   +   A+      L   DV++V
Sbjct: 401 KLVAV-----GGREAAWL--DMGAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLV 452


>gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
 gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
          Length = 458

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 165/479 (34%), Gaps = 35/479 (7%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   +  SI   ++    I+ VS+D+R I+ G ++V + G   +GH F+ +A
Sbjct: 1   MIIRSLADIQTMIPGSIIDERYASVMIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKEA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA A + S             ++ P++ V+++   L   A     +    I+ VTG+
Sbjct: 61  FEKGAAAALWSK------HEPNAPTDVPLIFVEDSLVALQQLAHAYRKQLRACIIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +          +  +G    +     +       P+ L             
Sbjct: 115 NGKTTTKDMI----------ASLLGTVYRVQKTEGNLNNHIGVPLTLL---RLKEETEYA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S  G  +      +      TN+G  H+    +++    AK  + + L      
Sbjct: 162 VVEMGMSGFGEIELLSTLAEPDVSIITNIGESHLQELGSREGIATAKFEIVKGLKRDGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D    +      N               +   +    +     ++    +  F 
Sbjct: 222 IYH--GDEPLLQTRVENANLSHVQTFGMAPTNDYYPLDIRVQADGTTFKVNRWPNE-TFR 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G   V NAL A  +     +D   + E   +L V   R E +  +     I   Y 
Sbjct: 279 MPLLGRHHVMNALAAIAVARFAFVDIDHIKEGFLRLSVTKMRTEVIKRSDGVTIINDAYN 338

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S+   L+ +  +T   + I + G     G+++      +G++        ++T   
Sbjct: 339 ASPTSMRAALELLGQLTGYRKKIAIVGDMLELGEQEIAFHEQIGEMIDPQKIDYVLT--- 395

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
              E  + I                 ++ E       ++   DV+++ A +G +   I+
Sbjct: 396 -YGERAKAIAERASKRFSEGRVRAYDDKSELAADVRGIIEAGDVILLKASRGMKLEEII 453


>gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
 gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
          Length = 458

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K+ A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447


>gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Ames]
 gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Sterne]
 gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A1055]
 gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Vollum]
 gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Australia 94]
 gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus anthracis CI]
 gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Ames]
 gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 172/476 (36%), Gaps = 42/476 (8%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + E L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKYFGVTWEEMKEGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K+ A+I  G              N+ E ++    +++ +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDTKDVVLVKASRG 447


>gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
 gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
          Length = 482

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 163/461 (35%), Gaps = 29/461 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+   +A+GA A+
Sbjct: 12  ADAAVWMAGAHLAGPDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAV 71

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS   +         S   +L V +TR  L   A+    + P  ++AVTG++GK++V  
Sbjct: 72  LVSRPPAA----MLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKE 127

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +   +     ++      ++           P+ L +  +      +  + +  + 
Sbjct: 128 MISAVFACAVGEDARLATAGNFNNDI-------GLPLTLFRLNARHK---LAVLELGMNH 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +      +       N  R+H ++  + +A       +   L              
Sbjct: 178 PGETEVLATIAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAAN 237

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +        AG R +             V    + Q V +   G  F F  PL G   
Sbjct: 238 GGEYAPLWRAAAGTRRVLDFGIEGGAVSATVTDTADGQHVDVQAPGLRFSFTLPLLGVHN 297

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NAL A    +A GI   ++ + L     V GR +       G  +   Y    +S+  
Sbjct: 298 ARNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRA 357

Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKI 428
            +  + T+ + R +V+   G  G +       +G  A     D  + T      E    +
Sbjct: 358 AIDALATLPAPRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLAT-----GELARHV 412

Query: 429 RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                 G   F       EA I   +  +     ++V  KG
Sbjct: 413 VDAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447


>gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           sp. W3-18-1]
 gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens CN-32]
 gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. W3-18-1]
 gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella putrefaciens CN-32]
          Length = 460

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 166/467 (35%), Gaps = 50/467 (10%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E+++Q         +  I ++SSDSR +    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EVLSQHLGAHRVGNDVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +L         N P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAL---------NIPQLIVTDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  I        +  G   + I       RLT      + +  +                
Sbjct: 118 IATILSAKYQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKG------------ 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +     G+     +  N            QA            L  +  AII ADDA
Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306
           ++  +  +A        S         +  +   H        +  ++  G+  D   PL
Sbjct: 223 FADVMSVKARPYKQLHFSQQEGAAKRRIDVIATGHKADADGCYRFMLNYLGESCDVKLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV NAL AA +CIA+G+    +   L +L  V GR +          I   Y    
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQLGRI-RLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTD------ 417
            S+   +  ++ I+  R +V+   G  GD        +G++A     D    T       
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHT 401

Query: 418 ----DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIE 454
                    E    +  ++I  I         + KG+R  A+   ++
Sbjct: 402 SQAFGAEHHESVAVLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVD 448


>gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 450

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 173/467 (37%), Gaps = 39/467 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L ++I     E+I       ++  E   N++S+D+R IQ   +F+A+ G   +G+ +  
Sbjct: 4   NLAEIIKAVDGEII-------VKNNEGIFNKISTDTRKIQENNLFIALKGENFNGNDYTI 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QAI +GA  I++     ++     +++   I+ V +T++ L   A     K    ++ +T
Sbjct: 57  QAIEKGASIIIID---DVKFKIEELKNRGTIIKVKDTKEALGDLARFYRKKIGVKVVGIT 113

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V              G          +N +  P                
Sbjct: 114 GSTGKTSTKDLVAAFLSGKYKVFKTQGN--------FNNEIGLP-----LMIFELSKDYD 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  S+ G             G+ TN+G  HI+Y +T++     KM + +    K 
Sbjct: 161 IAVLEMGMSNFGEINKLASIALPDVGAITNIGVAHIEYLKTRENILKEKMSITDFFENKN 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           S  +   +D     V           +                  N     ++ + +++ 
Sbjct: 221 SLIVNCENDMLKTIV--ECDKFNLERVGYDSTYNLYSKNIKLTSENTSFDVVTDDNENYR 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   + GE  V NAL+   +    G+    + + L   +    R E +    +   I   
Sbjct: 279 FTLNMVGEHNVLNALIGIQIARNFGLTFEEMEKGLGNFNATSMRLEVI-NKDKFTIINDS 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y    +S++  L+ ++  +  R I V G     GD  +     +G+ A D ADI + T  
Sbjct: 338 YNANPDSMKAALEVLKNYSGSRKIAVLGTMGELGDYAEEAHIQVGEFAKDKADILLTTG- 396

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   + +     G     +   ++ E ++   +M+   D +++
Sbjct: 397 --------EFKEYYKKGFGERTMVFESKQELMQRLTDMIKVNDTILI 435


>gi|158834102|gb|ABW81856.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Regiella insecticola]
          Length = 284

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 96/280 (34%), Positives = 134/280 (47%), Gaps = 7/280 (2%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             TT S I + K L++   QG    ++E SSHGL QHR+  +   A  FTNL RDH+DYH
Sbjct: 7   ENTTGSAIDVQKTLNHFVMQGANFAAMEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYH 66

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y  AK +LF     KE      ADD   +  + +  +A    +       +    
Sbjct: 67  GDMARYEAAKWQLFSTHHAKEKIIN--ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRW 124

Query: 281 ----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +        +       +   +  L G F V N L+A    +A+      ++  +
Sbjct: 125 LETKNINYHAQGVTLRFDSSWGEGRLVSRLLGAFNVSNLLMALATLLALDYPLKKLVATV 184

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +L  V GR E      R   + VDYAHT ++LE  L   R    G++  VFGCGGDRD+
Sbjct: 185 SQLQAVCGRMEVFNALDRPT-VIVDYAHTPDALEKALAAARLHCKGQLWCVFGCGGDRDK 243

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           GKR +MG IA   AD  +VTDDNPR+EDP  I A+I+ G+
Sbjct: 244 GKRALMGGIAEQWADHLVVTDDNPRTEDPGAIVADILSGL 283


>gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
 gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
          Length = 454

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 175/468 (37%), Gaps = 44/468 (9%)

Query: 3   LQDLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L  +  +   +++      FP+   ++ I  +S+DSR+I+ G IFVA+ G+K DGH F  
Sbjct: 2   LSQIDLEQISKILEISPGNFPVIISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAE 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+ +GA A+++         S    +  P  +V+NT K     A     +    I+AVT
Sbjct: 62  VAVEKGATALILDKK-----LSVLSTNEIPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +  +   +G     IG          +N +  P  +     L    +  
Sbjct: 117 GSVGKTTTKELIAAVLSTAGKVHKSIGN--------YNNEIGVPKTL-----LELDHTHH 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +   + G      +  +   G  TN+G  HI    +Q+A   AK  L  ++    
Sbjct: 164 YGVIEMAMRAKGEISLLTEITRPTIGVITNVGTAHIGRLGSQEAIAEAKCELLAQMSQDS 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              + +     S  +   +     + ++ G +G  +  + +         T+ VEGK+F 
Sbjct: 224 IAILNH---DNSLLLETASTFWQGKTITYGLEGGDLSGQLINP------QTLRVEGKEFP 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P       Y A +A    + +       L     +++  GR       +    +   
Sbjct: 275 LPLPGRHNALNYLAALAVAKVLDLDWTP---LTEGLTVNLPSGRSRRHQLPNNILILDET 331

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTD 417
           Y     S+   L+ ++     R I V G     G+R       +GK   DL  D  +V  
Sbjct: 332 YNAGLESMLAALQLLKETPGKRHIAVLGTMKELGERSPQFHHQVGKAVKDLGIDHLVVLV 391

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLV 463
           ++P++E        I  G  G          E +     ++   D ++
Sbjct: 392 NDPQAE-------HIAAGADGVATSCFKTHQEVVNYLQGLIKSGDRIL 432


>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
 gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
          Length = 450

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 158/471 (33%), Gaps = 42/471 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +++     +LI            ++I   S DSR +  G +++ I+G + DGH FI
Sbjct: 1   MRVSEIVEATGGKLI-------CGNSNQEITGFSQDSRKVSPGMMYIPIIGERFDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A++        +          I+ V +T K L   A  L       ++ +
Sbjct: 54  KNAFENGASAVISGRDIDDSEHI--------IIKVKDTLKALQDMAHYLRKHRKVKVVGI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    V  + ++   +    G                  P+ + +        
Sbjct: 106 TGSVGKTSTRDMVYSVIKQQYKTLKTEGN----------YNNAIGLPLTILRLKDEQVMV 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               ++       L       I     + TN+G  HI    +++    AKM +   +   
Sbjct: 156 LEMGMNHLKEMEELSMIACPDI----SAITNVGTAHIGELGSRENILKAKMEIINGMSDN 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I   +D     +          +      G       V             +GK +
Sbjct: 212 SMLVINNDND----MLSTVEVGRLNLIRVGIDNGVDFKANNVVLSDEGSTFNFEYKGKVY 267

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG+  V NAL+A  + + + I     ++ +++  +   R + V   +    I  
Sbjct: 268 FVDVPVPGKHFVMNALIAIAIGLQLDISPEQCIKGVKEFELTRNRMDIVELKNNITLIDG 327

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y  + +S++  +  + T  + R I V       G   +     +G          +V  
Sbjct: 328 TYNASEDSMKSSIDVLATY-TRRKIAVLADMLELGKYSEQLHRNIGMYVAKNKIDILVAV 386

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E    I A    G+       +  E I    +++   DV++   KG
Sbjct: 387 ---GKESKYIIDAASKAGVKQICYCNSNEEVINYLGKIIQSNDVILF--KG 432


>gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Micromonospora sp. L5]
 gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora sp. L5]
          Length = 469

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 93/478 (19%), Positives = 167/478 (34%), Gaps = 50/478 (10%)

Query: 6   LIYKDFPELINQL-SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+   +         + ++   V  DSR +  G +FVA  G + DGH +   A
Sbjct: 1   MIPLTLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
           I+ GA A++ +                P+++V +    +   A  +  + P   ++ +TG
Sbjct: 61  ISAGAVAVLGTREV----------PGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    + Q+  R G +    G  +            TP                 
Sbjct: 111 SSGKTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPE---------------T 155

Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            ++ +E  + G+   R     +        N+G  H+    + +    AK  L E  LP 
Sbjct: 156 RYLVMEKGARGVGHVRYLCDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEA-LPD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++ ADD     +  R      R            +        +   T+       
Sbjct: 215 DGLAVLNADDPRVDAMASRTRARVVR-YGESEHADVRAVDVTLDGRGRPSYTLVTPEGSA 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G  QV N+L AA +   +G+    +   L +L +V  R   V     G  +  
Sbjct: 274 PVRLGLTGRHQVSNSLAAAAVGRELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVID 333

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414
           D Y     S  + L+ + ++   GR + V G     GD +      +G++A +L  D  +
Sbjct: 334 DSYNANPASTGVALRALASMRGEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLL 393

Query: 415 VTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           V       E    I          G    +   ++  A+      L   DV++V  KG
Sbjct: 394 VV-----GEPAAPIHEGATAVGNWGGESVL-LTDQAAAVEVLRSELRPGDVVLV--KG 443


>gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
 gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
          Length = 482

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 163/461 (35%), Gaps = 29/461 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +    ++   +   +  +  V++DSR +Q G +FVA++G + D H F+   +A+GA A+
Sbjct: 12  ADAAVWMAGAHLAGPDAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAV 71

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS   +         S   +L V +TR  L   A+    + P  ++AVTG++GK++V  
Sbjct: 72  LVSRPPAA----MLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKE 127

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +   +     ++      ++           P+ L +  +      +  + +  + 
Sbjct: 128 MISAVFACAVGEDARLATAGNFNNDI-------GLPLTLFRLNAQHK---LAVLELGMNH 177

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +      +       N  R+H ++  + +A       +   L              
Sbjct: 178 PGETEVLATIAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAAN 237

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +        AG R +             V    + Q V +   G  F F  PL G   
Sbjct: 238 GGEYAPLWRAAAGTRRVLDFGIEGGAVSATVTDTADGQHVDVQAPGLRFSFTLPLLGVHN 297

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NAL A    +A GI   ++ + L     V GR +       G  +   Y    +S+  
Sbjct: 298 ARNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVVDDTYNANPDSVRA 357

Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKI 428
            +  + T+ + R +V+   G  G +       +G  A     D  + T      E    +
Sbjct: 358 AIDALATLPAPRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLAT-----GELARHV 412

Query: 429 RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                 G   F       EA I   +  +     ++V  KG
Sbjct: 413 VDAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447


>gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 482

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 165/460 (35%), Gaps = 29/460 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+   +A+GA A++
Sbjct: 13  DAAAWMAGAHLAGPDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVARGAAAVL 72

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS   +     A   S   +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 73  VSRPPAA----ALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 128

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +   +     ++      ++           P+ L +  +      +  + +  +  
Sbjct: 129 ISAVFACAVGEDARLATAGNFNNDI-------GLPLTLFRLNARHK---LAVLELGMNHP 178

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +       N  R+H ++  + +A       +   L               
Sbjct: 179 GETEVLATIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANG 238

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +        AG R +             V    + Q V +   G  F F+ PL G    
Sbjct: 239 GEYAPLWRAAAGTRRVLDFGIEGGAVSATVTDTADGQHVDVHAPGLRFSFMLPLLGVHNA 298

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A    +A GI   ++ + L     V GR +       G  I   Y    +S+   
Sbjct: 299 RNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGVHGGLVIDDTYNANPDSVRAA 358

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429
           +  + T+ + R +V+   G  G +       +G  A     D  + T      E    + 
Sbjct: 359 IDALATLPAPRWLVLGDMGEVGAQGPAFHQEIGAYARERGIDAVLAT-----GELARHVV 413

Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                G   F       EA I   +  +     ++V  KG
Sbjct: 414 DAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447


>gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
 gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
          Length = 460

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 156/413 (37%), Gaps = 34/413 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I  +SSDSR I    +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   EALSQHLSAHRVGDDVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERQLAF---------DVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  I        +  G   + I       RLT+     + +  +    +     S+    
Sbjct: 118 IATILSAKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSL---- 173

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     ++       N+G  H++   +Q     A        L     AII ADDA
Sbjct: 174 ----------VRPHVALVNNVGSAHLEGFGSQAGVAQA-KSEIYNHLQPGGTAIINADDA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306
           ++  +  +A        S         +  +   H        +  ++  G+  +   PL
Sbjct: 223 FADVMRVKAKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV NAL AA +CIA+G+    + E L +L  V GR +          I   Y    
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGRV-RLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
            S+   +  ++ I+  R +V+   G  GD        +G++A     D    T
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394


>gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 453

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 173/467 (37%), Gaps = 41/467 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +++     EL+       ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +
Sbjct: 5   LNEVLKAIDGELL-------IKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVE 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA   ++     +      +     ++ V++++  L   A     K    ++ +TG
Sbjct: 58  AIKAGATVAIID---EVNFKLEELNGKGTVIKVNDSKTALGALAKYYREKLGIKVVGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V              G  +                I L   +  L S   
Sbjct: 115 STGKTSTKDLVAAFLSGKYSVFKTKGNFNNE--------------IGLPLMIFELDSSYD 160

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V    +++  + HRL  I +      TN+G  HI+Y +T++     K  + +      
Sbjct: 161 IAVLEMGTNNFNEIHRLANIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNN 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +  + Y +D    + +  ++      +    +             +     ++  G+   
Sbjct: 221 TLVVNYEND--MLQKVNESNEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHR 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   + GE  + NAL+   +    GI    +   L        R EF+  N+        
Sbjct: 279 FKLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNFTIINDC- 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  L  ++T +  R I V G     G+  +    ++G+ A+  ADI + T  
Sbjct: 338 YNASPDSMKSALSVLKTYSGSRKIAVLGDMGELGEHAKSSHEMVGQDAIGKADIVLTTG- 396

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVV 464
                   + R +   G        N  E ++     ++   DV++V
Sbjct: 397 --------EFREDYKSGFGKDTVTFNCKEELKNYLCNLIKDGDVILV 435


>gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 455

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 97/469 (20%), Positives = 169/469 (36%), Gaps = 36/469 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++         +     R R++ ++ +DSR  + G +F AI G   DGH FI
Sbjct: 1   MK--NLTLENIAGACGGAYVGSDADRSREVADIVTDSRRAKEGSLFAAICGEHVDGHRFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ  AQGA  ++   A +            P ++V++T K L   A     +    ++ +
Sbjct: 59  PQVYAQGALCVLCEKAPAEAQG--------PYILVESTLKALMAIAEFYRQQLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +           G  +            T                
Sbjct: 111 TGSVGKTSTKEMIASVLSEKYRVLKTPGNFNNELGLPLTVFQLTEE-------------D 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  +  G + HRL  I +      TN+G  H+++   +     AK  +F+ + P
Sbjct: 158 EVAVLEMGINHFG-EMHRLSKIARPDVCVITNIGTCHLEFLGDRDGVLRAKSEIFDFIAP 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +    D      +K       +   + +           A     +  I    + 
Sbjct: 217 DGQIVL--NGDDDKLSALKEVRGITPQFFGIEHACAIRATDIENAGLKGVKCRIHDGTES 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F    P+PG   V NAL A  +  A+G+    +   +EKL  + GRF  +   + G  + 
Sbjct: 275 FAVTIPIPGYHMVLNALAATAVGRALGMSLEEIRRGIEKLQALGGRFRIL--EAGGITVV 332

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
            D Y     S++  L  +     GR I V G     G+ +Q     +G+ A  L      
Sbjct: 333 DDCYNANPMSMKASLGVLAD-APGRKIAVLGDMGELGENEQQLHGEVGRFAAGLDIPVFF 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     E+IR   +      I   +  E +R   + + K D ++V
Sbjct: 392 CVGALCRYMAEEIRR--LSPEKQVITADSVEEVLRLLPDSVQKGDTVLV 438


>gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51]
 gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 480

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 146/457 (31%), Gaps = 23/457 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +    DSR ++AG IF A+VG + DGH +I  A  +GA  ++             +    
Sbjct: 15  SGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKERLEHRREVRVPEGK 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V++    +   A     +    ++A+TG++GK++    V  +          +   
Sbjct: 75  ALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAVLSEKYRVHKNMENQ 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +          L  P    +      +   G        +   +      G   +    +
Sbjct: 135 NNELGLPM-TILNAPENTEVLILEMGMRGLGQIAFLCAIARPDIGVITNIGTTHMELLGS 193

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                   +   +         L  E       A   +   +   +  R H    R +++
Sbjct: 194 QQAIAQAKWELIEALPETGSAVLNGEDEWSVKLAGQDSHQTFFYGLEGRFHEPDLRGMNL 253

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDF----------DFLFPLPGEFQVYNALVAAG 320
              G      +V           +V   +               PLPGE  V +AL A  
Sbjct: 254 TPFGILGTRFQVGHRQVGHGDRCAVPFAEVAAEVGQKTCPHVSLPLPGEHNVLDALAALS 313

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + I + +        L  + +   R E          I   Y     S++  L+ ++   
Sbjct: 314 VGILLDVSLEEGCRGLAAMELSRMRLELHQGPEGSTLISDVYNANPTSMKASLQVLKERG 373

Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               + + G     G+  +     +G+   +L    ++T   P +E+       +  G+ 
Sbjct: 374 GASTLAILGEMYELGEASREGHYEVGQTVAELGISELITV-GPLAEEIA--CGALEKGLS 430

Query: 438 --GFIEKGNRIEAIRTA---IEMLNKQDVLVV-AGKG 468
                   +R  AI+ A   +  LN+   +++ A +G
Sbjct: 431 PQRIHSFPDREGAIKKAQELLADLNQGTWVLIKASRG 467


>gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Marinobacter aquaeolei VT8]
 gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Marinobacter aquaeolei VT8]
          Length = 465

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 99/468 (21%), Positives = 173/468 (36%), Gaps = 42/468 (8%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +    L   L+       E   + VS+D+R +  G +FVA+ G + DGH F+ QA+ Q
Sbjct: 7   LAEAREWLQATLAGARTDAGELWFDGVSTDTRSVGDGQLFVALRGERFDGHEFLGQALKQ 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A VV +               P LVV +T + L+  AS    +    ++A+TG+SGK
Sbjct: 67  GAVAAVVDTEI--------TDVAIPQLVVSDTVQALADLASGNRSESAARLVAITGSSGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V      I    G +    G  +            TP                   + 
Sbjct: 119 TTVREMTGAILAGMGPTLVTEGNLNNHIGVPLTLFRLTPD-------------HQFGAIE 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + AS  G   H +   +      TN G+ H++   + Q    AK  + + +    +  + 
Sbjct: 166 LGASGLGEIAHTVSITRPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDGVPADGAVVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFP 305
             D A+ +   +        V  +G+     H + + A     +   +  +      +  
Sbjct: 226 RDDPAFDQWHARAGQRRVLGVSRMGHPAADYHAEAIMATDQGFEFLVLGPDSWRCHLVLG 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPGE  + NAL+A   C  +G     V   L ++  V GR + +   S    I   Y   
Sbjct: 286 LPGEHNITNALLALAACRELGATDQQVQSGLMQVEAVKGRLQVLKPASDLTLIDDSYNAN 345

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIV------- 415
             S++  L  + +  + R+ V+      GD  +     +G+ A     +  +V       
Sbjct: 346 PASMKAALDVLASYPAPRLAVLGAMAELGDEAEELHRQVGEHARARGINKLMVVGAGGNG 405

Query: 416 --------TDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                   T+  P  E     I A+  +G    + KG+R  A+    E
Sbjct: 406 YGTGFGDETEFFPSHEQAVNAIVAD-RNGAMTVLVKGSRSSAMDRVAE 452


>gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 458

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 155/393 (39%), Gaps = 27/393 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +I++V +D+R +  G +F+A+ G K D H F   A+A+GA A++VS          
Sbjct: 19  GADTQISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADAVAKGAGALLVSK--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P +VV +T   L L  + +  + P  I+A+TG+SGK+SV     +I ++ G   
Sbjct: 70  RLPIDAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKTSVKEMSAEILRQCGNVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +             P                   V + A+  G   + ++ +K 
Sbjct: 130 YTAGNFNNDIGVPLTLLRLEPE-------------HEFAVVELGANHVGEIAYTVNLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F+ L    +  I    + +     K  H   
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAKAKGEIFDGLTSNGTAIINADSNDWPHWQEKITHQRV 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R      +        V   H   +  +         + PLPG   V NAL A  L ++
Sbjct: 237 WRFSPQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAATALTMS 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G     V + L +L  VPGR   +  N++   +   Y     S+    + + ++   R+
Sbjct: 297 VGATLENVRQGLSELKAVPGRLFPIRLNAQQLILDDTYNANVGSMTAAAQVLGSMPGYRV 356

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALDLA--DIA 413
           +VV   G  G  ++     +G IA   A  D  
Sbjct: 357 MVVGDMGELGTEEEDCHRQVG-IAAREAGIDKV 388


>gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 469

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 168/478 (35%), Gaps = 50/478 (10%)

Query: 6   LIYKDFPELINQL-SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+   +         + ++   V  DSR +  G +FVA  G + DGH +   A
Sbjct: 1   MIPLTLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAGA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
           I+ GA A++ +             S  P+++V +    +   A  +  + P   ++ +TG
Sbjct: 61  ISAGAVAVLGTREV----------SGVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    + Q+  R G +    G  +            TP                 
Sbjct: 111 SSGKTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPE---------------T 155

Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            ++ +E  + G+   R     +        N+G  H+    + +    AK  L E  LP 
Sbjct: 156 RYLVMEKGARGVGHVRYLCDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEA-LPS 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++ ADD     +  R      R               +     +   T+       
Sbjct: 215 DGLAVLNADDPRVDAMASRTRARVVRYGESERADVRAVDVTLDGRG-RPSYTLVTPEGSA 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G  QV N+L AA +   +G+    +   L +L +V  R   V     G  +  
Sbjct: 274 PVRLGLTGRHQVSNSLAAAAVGRELGLPLPDLAAALNELGLVSTRRMDVFERPDGVTVID 333

Query: 361 D-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414
           D Y     S  + L+ + ++   GR + V G     GD +      +G++A +L  D  +
Sbjct: 334 DSYNANPASTGVALRALASMRGEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLL 393

Query: 415 VTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           V       E    I          G    +   ++  A+      L   DV++V  KG
Sbjct: 394 VV-----GEPAAPIHEGATAVGNWGGESVL-LTDQAAAVEVLRSELRPGDVVLV--KG 443


>gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
 gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
          Length = 458

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 166/472 (35%), Gaps = 34/472 (7%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V  +S    I   Y 
Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  +I        P        N+ E ++    ++   DV++V A +G
Sbjct: 397 -YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRG 447


>gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
 gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
          Length = 463

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/471 (15%), Positives = 145/471 (30%), Gaps = 35/471 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++D++      ++           + +I+ V +DSR I  G +FV ++G + DGH +I  
Sbjct: 6   IRDILTAVKGRILGDFDNL-----DLEISRVETDSRTIHEGSLFVPLIGEQFDGHAYITS 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A              +       + VD+T++ L   A     K    ++AVTG
Sbjct: 61  ALEGGAAACFTQRDRE------SYLPGKCYIRVDHTQRALRDLAVWYKKKFDIPVVAVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    V  +           G  +T                          S  +
Sbjct: 115 SVGKTTTKDMVAAVLGEHYKVLKTEGNLNT-------------DIGTCRTLFRLDKSYQI 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +  G  +      +      TN+G  HI++  +++    AK  +F    P   
Sbjct: 162 AVLEMGMNHPGEIEVMSAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCL 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D      ++                 +     V    +     +         
Sbjct: 222 AVL--NGDDPLLRTLEGKLPEPILWCGGAPGLDYTADHLVSDGTSNVCCEVKTPHTSCQV 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G   +Y  L+AA +    G+ +      +        R   +        +   Y
Sbjct: 280 EIPALGSHMIYPTLMAAAVAEHFGVTAEEFRRGVLHFAPTKMRMNIIQRGEDITILNDTY 339

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
                S+   ++ +    SGR I V G     G         +G          +V    
Sbjct: 340 NANPQSMRAAVEVLSKTHSGRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLVAV-- 397

Query: 420 PRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              E  + I        +P       + EA+    +++     ++V A +G
Sbjct: 398 --GELAKNIYDAAREAMVPEVHYCATKEEALPVLAQVVKPHATILVKASRG 446


>gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
 gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
          Length = 458

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 166/472 (35%), Gaps = 34/472 (7%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V  +S    I   Y 
Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  +I        P        N+ E ++    ++   DV++V A +G
Sbjct: 397 -YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRG 447


>gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
 gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
          Length = 458

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 166/472 (35%), Gaps = 34/472 (7%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVKKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V  +S    I   Y 
Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  +I        P        N+ E ++    ++   DV++V A +G
Sbjct: 397 -YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRG 447


>gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
 gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
          Length = 458

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 166/472 (35%), Gaps = 34/472 (7%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V  +S    I   Y 
Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKKDSGLTVINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFSQKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  +I        P        N+ E ++    ++   DV++V A +G
Sbjct: 397 -YGRLGAQIAEGAEINFPGERVKAYHNKEELVKDLQAVVGNNDVVLVKASRG 447


>gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
 gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
          Length = 458

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 171/477 (35%), Gaps = 44/477 (9%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +                N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  I           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      + +          +   F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQSTGTHFKMNRDETSSFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     G+++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLGGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468
                  K+ A+I  G        +R++A       I+ L      +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVGTKDVVLVKASRG 447


>gi|294791068|ref|ZP_06756226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
 gi|294458965|gb|EFG27318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
          Length = 540

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 89/523 (17%), Positives = 177/523 (33%), Gaps = 48/523 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++LI++D     +   I+P +        +S D+R +    +     G +     ++ +
Sbjct: 32  LKELIHQDS--WTDTPEIWPAETAGMTFTRISYDTRQVDDHTLLFC-KG-RFHS-SYLDK 86

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   G    V  + YS    +         ++V + +K +SL +S  Y ++P   + V G
Sbjct: 87  ADQDGLPCYVAENDYSQVTRAIG-------IIVTDIKKAMSLLSSAFY-RYPAKEITVIG 138

Query: 123 TSGKSSVASFVQQICQ----RSGLSSFQIGPTSTI--SSFAQDNRLTTPSPIYLAKALSY 176
            +G     +            +G  +  +             ++ LTTP  + L + +  
Sbjct: 139 ITGTKGKTTTAYFTHAILNAYTGGKAALLSSVDNCLDGHTFVESDLTTPESLDLFRMMRQ 198

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             SQG+ ++ +E SS      R+ G+    G+F N+  DHI      +          + 
Sbjct: 199 AVSQGMKYLIMEVSSQAYKVDRVYGLTFALGAFLNISPDHISPI---EHPSFEDYFYCKR 255

Query: 237 LLPKESPAIIYADDAYSKEVMKR-----------AHNAGCRVLSVGYQGKFIHLKKVCAI 285
            +   S A++   D     ++ +                               +     
Sbjct: 256 QIALNSSALVLNADMVHSSLVTQDAGLRGIPVTTFRLENSNADRTADLTVTSIREDKGES 315

Query: 286 HNKQQVTISVEGKDFDFLFP--LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              Q      +   F    P    G        + +   + +            +   + 
Sbjct: 316 PQFQARLKGKDLGRFSLSIPGDFNGANAAAALALISACGLDLTNPHVQQALQAMEKVTIA 375

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRP 400
           GR E   +  +     VDYAH   S  ++L  I         RII+V G  G++   +R 
Sbjct: 376 GRMEIFSSPDKSLVGIVDYAHNGVSASVLLDYIDQAYGRLNPRIILVTGSAGNKAYDRRQ 435

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAI--- 453
            + + A +     I T+++  +E    I  ++   +           +R +A++ A    
Sbjct: 436 EIVEAAQNRISRFIFTEEDTDTEPIIDICQQMDQAVSNPQVEHGIILSRSQALQEAFRDG 495

Query: 454 -EMLNKQDVLVVA--GKGHETVHIVTNGEKKMSVDCDIIREIL 493
            E   +    V+A  GKG+E      N       D  I++ +L
Sbjct: 496 KEHARQGKTTVIAAIGKGNERWIKHLNKHVVYQGDDRIMKGLL 538


>gi|169334709|ref|ZP_02861902.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257447|gb|EDS71413.1| hypothetical protein ANASTE_01112 [Anaerofustis stercorihominis DSM
           17244]
          Length = 408

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 141/386 (36%), Gaps = 12/386 (3%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRS-----GLSSFQIGPT-STISSFAQDNRLTTPSPIY 169
            ++ VTGT GKS+ + F++ I          +SS  I    +   S   ++ LTTP  + 
Sbjct: 11  KLIGVTGTKGKSTTSFFIKNILDLYLKSKGKMSSGIISTIDTYDGSELSESLLTTPESLE 70

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             K L+   +  + +   E SS      R+ G     G F N+G DHI   + +      
Sbjct: 71  FYKLLNNAVNNELEYFVCEISSIAYKYSRVYGANFNVGVFLNIGYDHISDVEHKDFDDYF 130

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             ++      +                +                        +   +   
Sbjct: 131 SSKIKLLENSEYIVINKDLLRYDEINEVLNNKEKDKIFTFSIDDKADYKAMNIKRKNRFT 190

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +   G+  ++   + G + V NA+ A  +C  + ID    +        V GR E  
Sbjct: 191 SFDLVHNGELKNYNLLMSGLYNVENAIAAIIVCEILCIDY-KYIFKGILGSAVKGRGEIY 249

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            T      + VDYAH   SL+   + ++      + I + G  G +   +R  +G +   
Sbjct: 250 KTKDGKKTLIVDYAHNELSLKRYFEFVKDEFKGKKHICIIGAPGGKALNRRKEIGTLCYK 309

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNKQDVLV-V 464
             D  I+T D+P  E  + I +EI+  IP +       NR EAI+ A+     ++ ++ +
Sbjct: 310 NCDEIILTSDDPFYESFDNICSEIMSFIPKYKKIRVIENRTEAIKEAVNSYKNEETIISI 369

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIR 490
            GKG ET        +    D    +
Sbjct: 370 LGKGSETSQNYNGISRDYISDSVNAK 395


>gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
 gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
          Length = 460

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 149/400 (37%), Gaps = 32/400 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  +  +SSDSR I    +FVA+ G++ DGH F   AI  GA A++V    +      
Sbjct: 19  GDDVTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVERELAF----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P L+V + +K +    + +  +     +A+TG++GK+SV   +  I        
Sbjct: 74  ----DIPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIATILSAKHQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +            TP                     + A+  G +     G+  
Sbjct: 130 YTAGNFNNEIGVPLTLLRLTPE-------------DKYGVFELGANHKG-EIDYTSGLVR 175

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +  N            QA            L ++  AII ADDA++  +  +A +  
Sbjct: 176 PHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKHYK 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
               S         +  +   H        +  ++  G+  + + PL G  QV NAL AA
Sbjct: 236 QLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALAAA 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +CIA+G++   + E L +L  V GR +          I   Y     S+   +  ++ I
Sbjct: 296 SVCIALGLNLTEIAEGLSQLTPVKGRMQPTQLGRV-RLIDDSYNANPVSVGAAIAWLKEI 354

Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
           +  R +V+   G  GD        +G++A     D    T
Sbjct: 355 SENRCLVLGDLGELGDNAPLLHAELGQLARQQGIDALFCT 394


>gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 459

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 148/390 (37%), Gaps = 24/390 (6%)

Query: 20  IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           +   Q     I++V++DSR +  G +F+A+ G + D H F   A+  GA A++VS     
Sbjct: 20  VTEQQAANICISDVTTDSRRVGNGSLFIALKGERFDAHDFFADAVKAGAGALLVSR---- 75

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                 +  N P +VV +TR  +   AS +  +    ++A+TG+SGK+SV      I ++
Sbjct: 76  -----VLDINFPQVVVKDTRLAMGKLASWVRQQSNARVVALTGSSGKTSVKEMTAAILRQ 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G + +  G  +               P+ L              V + AS  G   + +
Sbjct: 131 CGNTLYTAGNLN----------NDIGVPLTLF---RLTEQHEFAVVELGASHVGEIAYTV 177

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +  +       NL   H+    +  +   AK  +F  L  K +  I    + ++      
Sbjct: 178 EMARPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLSEKGTAIINMESNDWAHWQQVI 237

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 R       G   +   +          +       +   PLPG+  V NAL A+
Sbjct: 238 GDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEINLPLPGKHNVANALAAS 297

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L I++G     +   L +L  VPGR   +        +   Y     S+ + ++ +  +
Sbjct: 298 ALAISVGATLQDIRLGLSELKAVPGRLFPINLAEGKLLLDDTYNANVGSMTVAVQVLSQM 357

Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407
              R++VV   G  G++       +G+   
Sbjct: 358 PGYRVLVVGDIGALGEQSADYHRQIGETVA 387


>gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 458

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 90/468 (19%), Positives = 167/468 (35%), Gaps = 42/468 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +
Sbjct: 10  EQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +          N P++ V++T   L + A     +    ++ VTG++GK+S    
Sbjct: 70  WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKDI 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  +           G  +               P+ +    +   +  V  + +  SS 
Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    +++A   AK+ +   L            D  
Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N     ++ G      +      +            ++  F  P+ G+  V
Sbjct: 229 LLTNRVPEMNLIAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +    + IVV G     G+++      +GK+        + T          K+
Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--------YGKL 400

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-------QDVLVV-AGKG 468
            A+I  G         R++A     E+  +       +DV+++ A +G
Sbjct: 401 GAQIAEGA-KINFPTERVKAYDNKEELAKELQAVVDVKDVVLIKASRG 447


>gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
 gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
          Length = 460

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 92/413 (22%), Positives = 153/413 (37%), Gaps = 34/413 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  I        +  G   + I       RLT+     + +  +                
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTSADEFGIFELGANHKG------------ 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +     G+     +  N            QA            L  +  AII ADDA
Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306
           ++  +  +A        S        H+  +   H        +  +S  G+    + PL
Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLSYLGESCQVVLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV NAL AA +CIA+G+    + E L +L  V GR +          I   Y    
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
            S+   +  ++ I+  R +V+   G  GD        +G++A     D    T
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394


>gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
 gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
          Length = 458

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 170/477 (35%), Gaps = 44/477 (9%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +                N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  I           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            +   F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDETLSFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     G+++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468
                  K+ A+I  G        +R++A       I+ L      +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVGTKDVVLVKASRG 447


>gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
 gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
          Length = 462

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 165/466 (35%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      +  ++ ++ V+NT K L   A    GK    ++A+T
Sbjct: 58  MAIEKGAALCIVS---EINFSEGKVSKSSYVIKVENTNKALLDLAKYYRGKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A   K  +    +     
Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRC 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + I+   +   ++ L     R + V            
Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G         + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGAEGYRAHREVSEYAREKGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
 gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
          Length = 462

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+T
Sbjct: 58  MAIEKGAALCIVS---EINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A   K  +    +     
Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRC 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + I+   +   ++ L     R + V            
Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G         + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYARERGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
 gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
          Length = 458

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 172/479 (35%), Gaps = 34/479 (7%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VESGAVATLWMKGVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNREENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V TNS    I   Y 
Sbjct: 280 IPVLGKHNVYNTLASMAIAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                  +I        P        N+ E ++    +++ +DV+++ A +G +   I+
Sbjct: 397 -YGRLGAQIAEGAKINFPNERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEII 454


>gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
 gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
          Length = 458

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 2   IKRMLKQV--EQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 60  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  +           G  +               P+ +    +   +  V
Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y
Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     GD++      +GK+        + T  
Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT-- 396

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   +I        P        N+ E ++    +++ +DV+++ A +G
Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447


>gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 455

 Score =  143 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 81/466 (17%), Positives = 163/466 (34%), Gaps = 32/466 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +L   L+     + +  ++ +S D+R IQ G +FV   G + +GH F+ QA  +G
Sbjct: 2   KKTLKQLAAWLNEDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +                  P+L VD+    L   A     +H    + +TG++GK+
Sbjct: 62  AGASLWQKD------EPNPPEGIPLLFVDDPEVALQEMARAYRNEHKAKFIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +             IG  +               PI + +         V  + +
Sbjct: 116 STKDILAGTLAPFFKVQKTIGNFNNQ----------LGLPITILQ---LDEDTEVAVLEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +      +      TN+G  H+    ++     AK  + + +   +      
Sbjct: 163 GMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQ-PDGLLFYD 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+   +E++ +  +      + G +   +        +       +    + DF   + 
Sbjct: 222 GDEPLLQELVAKEMHLNAV--AFGLEPNNLLYADHIHANANGSSFTTHGMIEGDFFISVL 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+ QV N LVA  +   +G+ +  +   LE + +   R + V   +    I   Y     
Sbjct: 280 GKHQVKNTLVAMLISHQLGLKNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAPT 339

Query: 368 SLEM--ILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           S++         TI   + +V+      G D  +    +  +I     D   +    PR 
Sbjct: 340 SVKAAIQFIATSTIRPEKWLVLGDMLELGPDEQRFHEGLAEEIDEQEIDYVCL--FGPRM 397

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               ++  E   G    +   +   AI   +++ N+  ++++  KG
Sbjct: 398 THLYEVLKE-RFGAERLLYAEDDYTAIIEKLKLANESSIVLL--KG 440


>gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
 gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
          Length = 457

 Score =  143 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 34/460 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L     I     +  + + + +D+R I    +FVA+ G K DGH FI QA++ G  A++V
Sbjct: 11  LATGARILQQGRKNIRYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAVSLGTTAVIV 70

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             A  L         +  I VV NT K     A     +    ++AVTG+ GK+S  S +
Sbjct: 71  DDAGRL-----YPDGDYTIFVVKNTLKAYQDLALYHRRRFAIPVVAVTGSVGKTSTRSLI 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +  +           +      +     T                G   V +     G
Sbjct: 126 ATVLSQKYNVLQTEKNFNNEIGLPRTLLQLTGE-------------HGACVVEMGMRGLG 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +   D  +   G  TN+G+ HI+   +Q     AK  L E  L  +  A++  DD   
Sbjct: 173 QIKELADIAEPTIGVVTNVGKSHIELLGSQANIAKAKGELVEA-LGTDGTAVLNGDDKRV 231

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             + ++    G  V     +   +    +         T     +  D    + G   VY
Sbjct: 232 AAMAEK--CKGKTVSFGIKENAPVMAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNVY 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +   +G+    + + L +   VP R E +        I   Y     S+   +
Sbjct: 290 NALAAVAVGRLLGMSEHQMQKGLAEYKGVPMRQELIHLEDL-TFINDAYNANPASMAEAV 348

Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIR 429
             + ++ SGR I V G     GD  + +   +G  +A + AD  I   D     +   I 
Sbjct: 349 HTLMSVASGRKIAVLGGMLELGDWTKAEHEKIGALLAAEKADALIALGD-----EATYIA 403

Query: 430 A-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 G+    +     E      ++    D +++  KG
Sbjct: 404 DGAEQKGMKNVYKVRTHKEGAEILRKIAVAGDTILL--KG 441


>gi|292558100|gb|ADE31101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus suis GZ1]
          Length = 398

 Score =  143 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 87/402 (21%), Positives = 161/402 (40%), Gaps = 27/402 (6%)

Query: 5   DLIYKDFP-ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           D++  D     I Q +     W + + + +S DSR +    +F A  G       F+ +A
Sbjct: 9   DILKADNNFRHIKQNNQTASTWTDVQFDALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKA 66

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVT 121
           I  G +  V    Y +           P ++V + ++ +SL A   +G   +   +LA T
Sbjct: 67  IEAGLDFYVSEIDYEV---------GIPAIIVHDIKQAMSLIAMDFHGHPQKQLKLLAFT 117

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GT GK++ A F   I ++S   +      T+        + LTTP  + L   ++     
Sbjct: 118 GTKGKTTAAYFAFNILKQSKKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKN 177

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G+TH+ +E SS      R+ G+    G F N+  DHI      +          + LL  
Sbjct: 178 GMTHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPI---EHPTFEDYFYHKRLLMD 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S A+I        EV+K   ++            +    +     +      +      
Sbjct: 235 NSRAVIVNAGMDHFEVVKEQVSSK-------DHDFYGPTSENQISQSAGFDFTATGKLAG 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   L G F   NA+ A   C+ +G     +   + +   VPGR E +     G +++V
Sbjct: 288 HYDIQLIGGFNQENAIAAGLACLRLGASLEDIHTGIAQ-TNVPGRMEVLTQ-QNGAKVFV 345

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           DYAH  +S++ ++  +    +G++ ++ G  G++ + +R   
Sbjct: 346 DYAHNGDSVKKLIDVVLEHQTGKVFLILGAPGNKGESRRKDF 387


>gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
 gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
          Length = 460

 Score =  143 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 152/413 (36%), Gaps = 34/413 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  I        +  G   + I       RLT      + +  +                
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKG------------ 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +     G+     +  N            QA            L  +  AII ADDA
Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306
           ++  +  +A        S        H+  +   H        +  ++  G+    + PL
Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYSGESCQVVLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV NAL AA +CIA+G+    + E L +L  V GR +          I   Y    
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
            S+   +  ++ I+  R +V+   G  GD        +G++A     D    T
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394


>gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
 gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
          Length = 453

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/465 (17%), Positives = 173/465 (37%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +           G          +N +  P  I                
Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    GL Q R             TN+G  HI+  +T++    AKM +        +
Sbjct: 163 AILEMGMRGLGQIRELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD     +          V +   +   I  K +       + T+    K+ +F
Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFEIGAKNIALEELSSKFTVYDGEKEEEF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PGE  + N ++   +   +G+    +   L  +     R E +  +         Y
Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLNNIEATSMRLELIKKDGFSILNDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  I+ I   R I V G     G + +     +GK A +     ++   +
Sbjct: 338 NSSPVAVKSAIDVIKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             SE+   I+     G   +    N+ E I   + ++ + D+++V
Sbjct: 398 -FSEN---IKEGYGEGCTVY---KNKEELINDLLNIICEGDIILV 435


>gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
 gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
          Length = 462

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+T
Sbjct: 58  MAIEKGAALCIVS---EINFSEGKVSKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A   K  +    +     
Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILERGKTAYRC 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + I+   +   ++ L     R + V            
Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G         + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMRELGSEGYRAHREVSEYAREKGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 462

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL ++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLAEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      I  ++ ++ V+NT K L   A     K    ++A+T
Sbjct: 58  MAIEKGAALCIVS---EINFSEGKIGESSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVGAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A   +  +    +     
Sbjct: 220 DSILIINGDDDFLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKG 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A     A+ I+   +   ++ L     R + V            
Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRALDINYKDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G+        + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMRELGNEGYRAHREVSEYAREKGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E   +   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFGEAYREGFGEINK--ENYKSFLNNKEAAKYIKNIIKDGDIILI 441


>gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 462

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+T
Sbjct: 58  MAIEKGAALCIVS---EINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A   K  +    +     
Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRC 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + I+   +   ++ L     R + V            
Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G         + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTITLLGSMMELGSEGYRAHREVSEYARERGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 473

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 166/463 (35%), Gaps = 35/463 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +Q G +FVA++G + D H F+P+ +A+GA A++
Sbjct: 7   DAAAWMAGAHLAGPDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVARGAAAVL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS   +         +N  +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 67  VSRPPAA----TLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVKEM 122

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVE 188
           +  I  ++     ++      ++           P+ L +  +         G+ H    
Sbjct: 123 ISAIFAQAVGEDARLATAGNFNNDI-------GLPLTLFRLNAQHKLAVLELGMNHPGET 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A    + Q  +  I        N  R+H ++  + +A       +   L           
Sbjct: 176 AVLAAIAQPTVAMI-------NNAQREHQEFMVSVEAVAEEHAAVLAALPADGVAVYPRD 228

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                +        AG R +             V      Q++ +   G+ F    PL G
Sbjct: 229 AANGGEFAPVWQAAAGSRRVLDFGIEAGAVTGTVVDTAEGQRIDVQAPGQRFAITLPLLG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NAL A    +A G+   ++ + L     V GR +       G  I   Y    +S
Sbjct: 289 LHNARNALAATACALAAGVAPEVIAQALGNFAPVKGRLQRKQGTHGGLVIDDTYNANPDS 348

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDP 425
           +   +  + T+ + R +V+   G  G +       +G  A     D  + T      E  
Sbjct: 349 MRAAIDALATLPAPRWLVLGDMGEVGSQGPAFHEEIGAYARTRGIDAVLAT-----GELA 403

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    G   F    +    I   +  +     ++V  KG
Sbjct: 404 RHTVDAFGAGAQHFASAEDL---IEHGLGAIAPAATVLV--KG 441


>gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. 18P13]
          Length = 454

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 156/461 (33%), Gaps = 40/461 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+   +        +  + E+S+D+R I  G +F+A+ G + DGH F  QA  QGA 
Sbjct: 5   TLTEIAQAVGGTLSNCPDCAVTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++             +  + P +VVD+T K L  FA+    K     + VTG+ GK++ 
Sbjct: 65  AVISDH----------VIPDCPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTT 114

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  +      +    G  +               P  L    S         V +  
Sbjct: 115 KNMIALVLSTHCKTLKTAGNLN----------NEIGLPKTLMGLDSTYK---AAVVEMGM 161

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G             G  TN+G  HI   ++Q+    AK+ + + +       +    
Sbjct: 162 SDFGEISRLSKAAAPSIGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVV--NG 219

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D      +K   +       +   G     +++ + +      +  +G       P  GE
Sbjct: 220 DDPYLIPLKTTLSRPVYTYGIKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGE 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V N   A  + +  G++   +   L        R + +        I   Y  + +S+
Sbjct: 280 HNVMNGAAAFCIGMLAGMEPEEIAGALRTYQPDGMR-QNIQQIDDKTVILDCYNASPDSM 338

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIM----GKIALDLADIAIVTDDNPRSED 424
              L  +  +  +GR I V G   +  +  R +     G +     D+        R   
Sbjct: 339 RASLSVLGQLSVTGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYGPESRY-- 396

Query: 425 PEKIRAEIIH-GIPGFIEKGNRIEAI-RTAIEMLNKQDVLV 463
              I  E    G+P  ++     EA+       L   D ++
Sbjct: 397 ---IAEEAAKQGVP--VQHFTEKEALTEQLRRSLQPGDAVL 432


>gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 451

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 158/467 (33%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ N +S     Q+  R I  V+ DSR I+   +F+   G   DGH FI QA+
Sbjct: 1   MINVTLQQIQNWISCEIDEQYLSRSIKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        L +         PI+ V++T + L   A          ++AVTG++
Sbjct: 61  KDGAVASFSEKGTELSEDVEG-----PIIWVEDTLQALQDLAKAYLKHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT        +           H
Sbjct: 116 GKTTTKDMIESVLTTEFKVKKTQGN----YNNEIGMPLTILDLDEDTEISILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S+           +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 172 EIELLSTIA---------EPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +   +  V +        V          H+  V        +       D  ++ 
Sbjct: 223 YDGDEPLLTPHVKQIQQAKLISVGLGDANSLVCHVDDVETEGIGFTI-----NNDESYVL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+  A + E++  + +   R E   T+     I   Y  
Sbjct: 278 PILGIHNMKNAAIAIAVGHELGLPYATIKENIRHVQLTGMRMERHQTDDNVTVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  + ++  GR I++       G   Q     +G      +   + T     
Sbjct: 338 SPTSMKAAIDTLSSM-EGRKILILADVLELGTNSQQMHEEVGTYLDGKSIDILFT----Y 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + E I       +       ++ E I+    ++ + D ++V  KG
Sbjct: 393 GTEAEYIFNTGQSYVETAKHFDDKSELIKELKAIVKENDKILV--KG 437


>gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 453

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 175/465 (37%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +           G          +N +  P  I                
Sbjct: 118 GKTSTKDLVAAVLSYKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    GL Q +             TN+G  HI+  +T++    AKM +        +
Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD     +          V +   +   I  K +       + T+    K+ +F
Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PGE  + N ++   +   +G+    +   L+ +     R E +  +         Y
Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  ++ I   R I V G     G + +     +GK A +     ++   +
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             SE+   I+     G   +    N+ E I+  + ++ + D+++V
Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435


>gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
 gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
          Length = 458

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 170/477 (35%), Gaps = 44/477 (9%)

Query: 6   LIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++   +   +    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +                N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  I           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            +   F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDETSSFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     G+++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468
                  K+ A+I  G        +R++A       I+ L      +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVGTKDVVLVKASRG 447


>gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           sulfurreducens KN400]
          Length = 470

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 166/474 (35%), Gaps = 43/474 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++     E++               + VS+DSR ++ G +F+ + G + DGH ++  
Sbjct: 5   LDDILGATGGEIVAGGETIGA-------SGVSTDSRTVEPGELFIPLRGERFDGHDYLDA 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A A+G    +V   +        + ++   +VVD+T + L   A+    +    ++AVTG
Sbjct: 58  ARARGVRLTLVERQWLA---GRQLPADVTCIVVDDTLRALGDLAACHRRRFDIPVVAVTG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    +  I  R+G      G          +N +  P                 
Sbjct: 115 SNGKTTTKEMLAAILARTGEGLKTEGNL--------NNLIGVP-----RMLFRLSGVHRW 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G      + ++   G  TN    H++   + +    AK  LF   L   S
Sbjct: 162 AVLEIGMSEFGEIDRLAEIVRPDVGIITNAYPAHLETLGSVEGVARAKGELFLR-LEPGS 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC-AIHNKQQVTISVEGKDFD 301
            A+  ADD     + +     G + +S G +G  +  + V       Q+ T+ +      
Sbjct: 221 SAVYNADDP---LIARCPSPEGVKRVSFGLRGGDVTAEDVENLGKKGQRFTLRLPNGRVT 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G   V NAL AA     +G+    +   L +      RF           I   
Sbjct: 278 VTLHAFGSHNVANALAAAAAARVLGVAPEEIARGLGEFMPYARRFNLEEVGDV-VLIDDS 336

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
           Y     S+   L  +R I  SGR + V G     G   +     +G++A    D   V  
Sbjct: 337 YNANPASMAAALTTLREIKGSGRAVAVLGDMLELGIGAEEAHRQLGRLAATCVDRLYV-- 394

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     + A  + G           +  E +          ++++V  KG
Sbjct: 395 ---LGAMAGTVAAGALEGGLEERHVTIAADHGEIVADLRRTAATGEMILV--KG 443


>gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter
           uraniireducens Rf4]
 gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter uraniireducens Rf4]
          Length = 468

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 169/467 (36%), Gaps = 36/467 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+I       +      ++ VS+DSR + AG +FVA+ G + DGH ++  A+A+G  
Sbjct: 3   TIDEIIEATGGTRIGSGNDAVSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVARGVR 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +V++            ++   + V +T + L   A+    +    ++ +TG++GK++ 
Sbjct: 63  AFLVAADRLAGKQP---PNDVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I  ++G      G  + +          T                    + +  
Sbjct: 120 KEMLATILAQTGPGLKTSGNLNNLIGLPLMLLRLT-------------KRDRWAVLEMGM 166

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G      +      G  TN    H++   + +A   AK  LF   L  +  A+  AD
Sbjct: 167 SEPGEIDRLAEMANPRIGVITNAFTAHLESMGSVEAVAKAKGELF-MRLKTDGWAVYNAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPG 308
           D     + +    AG + LS G +G  +  + + ++  +  + T+ + G D        G
Sbjct: 226 DP---LISRCPAPAGVKRLSFGLRGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              VYNAL AA     +G+D  L+   LE+      RF           +   Y     S
Sbjct: 283 LHNVYNALAAAAAAHLLGVDPELIRSGLEEFTPYDKRFSLEEIRGV-VLVDDSYNANPAS 341

Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   L  +R I    R I + G     G         +G +A    +           E 
Sbjct: 342 MAAALVTLRDIREESRAIAILGDMLELGTGSVAAHREVGLLAATCVERLY-----AMGEM 396

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E + A  + G       +      E I      + K D ++V  KG
Sbjct: 397 AETVAAGAVDGGLSPENIVVARTHEEIIADLRRRVAKGDNILV--KG 441


>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 459

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 165/452 (36%), Gaps = 40/452 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +     V++DSR +    +F+ ++G K DGH +I Q    GA   + S           
Sbjct: 22  PDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVCLTSKPIPEV----- 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +    ++VD+T K L   A+    K    ++ +TG+ GK+S    V  +  +      
Sbjct: 77  --AGCSAVLVDDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSCVLSQKYSVLK 134

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
             G  +               P+ +    S         + +  S  G +  RL  I + 
Sbjct: 135 TQGNFN----------NEIGLPLTVLNIDSS---HETAVIEMGMSGFG-EISRLTAIARP 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  HI+   +Q+    AK+    E L K    ++  DD   K +  +     
Sbjct: 181 DIAIITNIGVSHIEKLGSQEGILKAKL-EILEGLHKNGLVVLNGDDPLLKPLKGKLPFRT 239

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                 G         +           I+V    ++   P+PG   VYNAL A    I 
Sbjct: 240 VLYGMHGGSDYTASNYQ-TMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAAIAAGIE 298

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG- 382
           + I   +++  +++    PG       N  G +I  D Y  +  S++  +  +  I+SG 
Sbjct: 299 MKIPMEIIINGIKQF--SPGNMRQSIINHNGIKIINDAYNASPQSMQAAINVLEEISSGS 356

Query: 383 RIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GI 436
           R I V G     G+  +     +G+   +     I+T      +D   I   +     G 
Sbjct: 357 RSIAVLGDMFEMGNMSKDLHYSVGEFIKNKKINYIITV----GQDSGMISQAVADSGNGE 412

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +  EA++  + ++   D +++  KG
Sbjct: 413 IKLRHFESNKEALKYILGIVMPGDYILI--KG 442


>gi|207108798|ref|ZP_03242960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 207

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 10/193 (5%)

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               +      PL G + +YN L       +   +    +   LE  + V GR E V + 
Sbjct: 21  RFCKEIALIHSPLLGRYNLYNILAGVLGVKLLTQLPLETIAPLLENFYGVKGRLEIVHSK 80

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                + VD+AHT++ ++ + ++ +     +I  +FG GGDRD+ KRP MG IA   A  
Sbjct: 81  PL---VVVDFAHTTDGMQQVFESFKN---QKITALFGAGGDRDKTKRPKMGAIASCYAHQ 134

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I+T DNPRSE+ E I  +I+ GI      + + +R +AI  A+E L   +VL++ GKG 
Sbjct: 135 IILTSDNPRSENEEDIIKDILKGINDSSKVVIEKDRKKAILNALENLKDDEVLLILGKGD 194

Query: 470 ETVHIVTNGEKKM 482
           E   I  +     
Sbjct: 195 ENTQIFKDKTYFF 207


>gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens str. 13]
 gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium
           perfringens str. 13]
          Length = 453

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 174/465 (37%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +           G          +N +  P  I                
Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    GL Q +             TN+G  HI+  +T++    AKM +        +
Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD     +          V +   +   I  K +       + T+    K+ +F
Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PGE  + N ++   +   +G+    +   L+ +     R E +  +         Y
Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  ++ I   R I V G     G + +     +GK A +     ++   N
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGN 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             SE+   I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435


>gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
          Length = 453

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 175/465 (37%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +           G          +N +  P  I                
Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    GL Q +             TN+G  HI+  +T++    AKM +        +
Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD     +          V +   +   I  K +       + T+    K+ +F
Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PGE  + N ++   +   +G+    +   L+ +     R E +  +         Y
Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  ++ I   R I V G     G + +     +GK A +     ++   +
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             SE+   I+     G   +    N+ E I+  + ++ + D+++V
Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435


>gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
 gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
          Length = 454

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 176/468 (37%), Gaps = 40/468 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+      +IN+ +      +E  +  VS+DSR I    +F+A+ G + D H F  Q
Sbjct: 6   LSQLLQVTHGRVINEGN------QELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQ 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A++V     +         N P ++VD+TR  +   A+ +  +   +++ +TG
Sbjct: 60  VVDAGAAALLVDHQLDI---------NCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK+SV      I  + G + +  G  +               P+ L +          
Sbjct: 111 SSGKTSVKEMTASILVQRGKTLYTAGNLN----------NDIGVPLTLFRLTHD---HQF 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+     ++  + +K  A    NL   H++   + +    AK  +++ L  + +
Sbjct: 158 AVIEMGANHPHEIEYTTNIVKPEAVLVNNLFGAHLEGFGSPEGVAKAKGEIYQGLPDEGT 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D+YS +   +      R      +    +   +         T+       D 
Sbjct: 218 AIV--NLDSYSDKWQFKPRQTVWRYSLTQQEHADFYPSNIQVKQLTTDFTLHTPVGQVDI 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG   + N L A+ L I++G     + + L     VPGR   V        I   Y
Sbjct: 276 TLPLPGMHNIANVLAASALSISVGATLEEISQGLASTKAVPGRLYPVRLGDNKVVIDDTY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                S+   +  + T+   RI+VV   G  G         +G IA   A +  V     
Sbjct: 336 NANDGSMIAAINVLATLPGYRILVVGDMGELGHYAHDCHQRVG-IAAKQAGLDKVLSVGQ 394

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            SE    I ++       F  K +    +   I +  + DV+ +  KG
Sbjct: 395 LSE----IISQSSECGEHFTVKQDL---LTRLIPLTQQNDVVSILVKG 435


>gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 458

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 172/477 (36%), Gaps = 44/477 (9%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +                N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  I           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            +   F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDETLSFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     G+++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AGKG 468
                  ++ A+I  G        +R++A       I+    +++ +DV++V A +G
Sbjct: 397 -----YGRLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVDAKDVVLVKASRG 447


>gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 453

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 171/466 (36%), Gaps = 39/466 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +++     EL+       ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +
Sbjct: 5   LNEVLKAIDGELL-------IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVE 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA   ++     +      +     ++ V++ +  L   A     K    ++ +TG
Sbjct: 58  AIKAGATVAIID---EVNFKLEELNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V              G  +                I L   +  L S   
Sbjct: 115 STGKTSTKDLVAAFLSGKYSVFKTKGNFNNE--------------IGLPLMIFELDSSYD 160

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V    +++  + HRL  I +      TN+G  HI+Y +T++     K  + +      
Sbjct: 161 IAVLEMGTNNFDEIHRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENN 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +  I Y +D    + +   H      +    +             +     ++  G+   
Sbjct: 221 TLVINYEND--MLQKVNEDHEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHR 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   + GE  + NAL+   +    GI    +   L        R EF+  N+        
Sbjct: 279 FKLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNFTIINDC- 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  L  ++T +  R I V G     GD  +    I+GK A+  AD  I+T  
Sbjct: 338 YNASPDSMKSALSVLKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKAD-IILTT- 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  +  ++    G   F  K +          ++   DV++V
Sbjct: 396 ---GEFRDNYKSGFGKGAVSFNCKEDLQ---NYLCNLIKDGDVILV 435


>gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 458

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 2   IKRMLKQV--EQMVNGTGLAEQYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 60  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  +           G  +               P+ +    +   +  V
Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y
Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     GD++      +GK+        + T  
Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFT-- 396

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   +I        P        N+ E ++    +++ +DV+++ A +G
Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447


>gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
 gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
          Length = 460

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 152/413 (36%), Gaps = 34/413 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  I        +  G   + I       RLT      + +  +                
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKG------------ 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +     G+     +  N            QA            L  +  AII ADDA
Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306
           ++  +  +A        S        H+  +   H        +  ++  G+    + PL
Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYLGESCQVVLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV NAL AA +CIA+G+    + E L +L  V GR +          I   Y    
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
            S+   +  ++ I+  R +V+   G  GD        +G++A     D    T
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394


>gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
 gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
          Length = 452

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 96/433 (22%), Positives = 153/433 (35%), Gaps = 50/433 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            +   +  I+ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS    +  
Sbjct: 16  ELHGADTDIDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGAGALLVSRKLDI-- 73

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                  + P LVV +TR      A+ +  + P  ++A+TG+SGK+SV      I    G
Sbjct: 74  -------DLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILGECG 126

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            + +  G  +            TP                   + + A+  G     +  
Sbjct: 127 NTLYTAGNLNNDIGVPMTLLRLTPE-------------HQYAVIELGANHQGEIAWTVSL 173

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +  A    NL   H++   +      AK  +F   LP    AI+ AD+           
Sbjct: 174 TRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPANGIAILNADNNDWLNWQSVIG 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +      S            +    +  + T+     D D L PLPG   V NAL A+ L
Sbjct: 233 DRKVWRFSPNLATSDFSATNIHITSHGTEFTLRTPVGDVDVLLPLPGRHNVANALAASAL 292

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +A+G     +   L KL  VPGR   V        +   Y     S+    + +  +  
Sbjct: 293 AMAVGAPLQAIKAGLAKLKAVPGRLFPVHLAENQLLLDDSYNANVGSMTAAAQVLSEMPG 352

Query: 382 GRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            R++VV      GD  +     +G+ A                            GI   
Sbjct: 353 YRVMVVGDMAELGDEAEACHQQVGEAAK-------------------------AAGIDKV 387

Query: 440 IEKGNRIEAIRTA 452
           +  G   E I  A
Sbjct: 388 LSVGTLSEGISRA 400


>gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS155]
 gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella baltica OS155]
          Length = 460

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 153/413 (37%), Gaps = 34/413 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGMFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +    + +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  I        +  G   + I       RLT      + +  +                
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKG------------ 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +     G+     +  N            QA            L  +  AII ADDA
Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306
           ++  +  +A        S        H+  +   H        +  ++  G+    + PL
Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV NAL AA +CIA+G++   + E L +L  V GR +          I   Y    
Sbjct: 283 AGRHQVSNALAAASVCIALGLNLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
            S+   +  ++ I+  R +V+   G  GD        +G++A     D    T
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394


>gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 456

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 174/466 (37%), Gaps = 36/466 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++ +A
Sbjct: 3   KMLELNLQEIVKATKGVLLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEA 62

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG+
Sbjct: 63  FNKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGS 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G          +N +  P  I               
Sbjct: 120 AGKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYD 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              +E    GL Q +             TN+G  HI+  +T++    AKM +        
Sbjct: 165 VAILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNN 224

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +  +   DD     +          V +   +   I  K +       + T+    K+ +
Sbjct: 225 TLVVCGNDD----FLGSLPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEE 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PGE  + N ++   +   +G+    +   L  +     R E +  +         
Sbjct: 281 FSLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLNNIEATSMRLELIKKDGFSILNDC- 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  +  +++  +  ++ I   R I V G     G + +     +GK A +     ++   
Sbjct: 340 YNSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFG 399

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  SE+   I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 400 D-FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 438


>gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 458

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 161/464 (34%), Gaps = 32/464 (6%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  +      + P+    R   +V +D+R +Q G +FVA+ G + DGH F+ QA+A+GA
Sbjct: 7   KEVEQATGARLLAPVTGGNRTFLQVYTDTRSLQKGGLFVALKGERFDGHDFVLQAVAKGA 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +VV                 P+  V +T +     A     +    ++AVTG+ GK+S
Sbjct: 67  AGVVV-----AAREETFAALPVPVFAVPDTLRAYQALARFHRRRFALPVIAVTGSVGKTS 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +  +           +      +     T                    V + 
Sbjct: 122 TRQMIASVLSQKLRVWQTEKNFNNEIGLPKTLLGLTAE-------------HEACVVEMG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
               G         +   G  TN+G+ HI+   +Q+    AK  L    LP    A++  
Sbjct: 169 MRGPGQIAELAAIAEPTIGVVTNVGKSHIELLGSQENIAKAKGELPAA-LPATGTAVLNQ 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD     + K     G  +      G  +   ++               + F    P+ G
Sbjct: 228 DDWRVAAMAKL--CRGKVIGYGTSVGAAVRAGEIQTDDKGLSFICRCFDQTFRATVPVLG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  VYNAL A      +G+    + + L     VP R E V        I   Y     S
Sbjct: 286 KHHVYNALAAVATARLLGLSETQMCKGLAAYAGVPMREELVHVGPY-TFINDAYNANPAS 344

Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +E  ++ +  +   + I V G     GD    +  ++GK     +  A++T   P S   
Sbjct: 345 MEEAVQTLAAVKKEQKIAVLGGMLELGDWTVREHELLGKKIAAASITALITLGTPAS--- 401

Query: 426 EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I       G+    +  +         ++L    V+++  KG
Sbjct: 402 -YIAEAAEKAGMKAVYQVSDHQAGAAVLRDLLEPGAVVLL--KG 442


>gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 463

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 97/470 (20%), Positives = 171/470 (36%), Gaps = 40/470 (8%)

Query: 10  DFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
              E++           +    +  V  DSR I+ G +FVA+VG + DGH F+ +A A+G
Sbjct: 3   TLREVLEGSRGALRGAADLGTPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFARG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +V  A              P++VV +T   L   A+     H   ++ +TG+ GKS
Sbjct: 63  AVAALVDRA----HVPRLPEGLGPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    V  +  +   +       +               P+ L +  S      +     
Sbjct: 119 STKEVVWSVASQRFRAIRSQRSFN----------NEIGLPLSLMEIGSDTEVVVLEIGGA 168

Query: 188 EASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            A     +  RL  I +   G  TN+   H+    + +A   A        LP++  A++
Sbjct: 169 YAPG---EISRLAEIARPTIGVVTNVSHSHLARMGSLEAIA-ATKAELPASLPEDGVAVL 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFP 305
             DD   + +  +      R          +  + V +   +     + V+G       P
Sbjct: 225 NGDDLRVRLMADKCRCRVIRYGL--APDCEVRAENVESHGLDGISFDLLVDGGRHHVHVP 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+  V+  L    + +A+G+     L  L     +  R   V        I   Y   
Sbjct: 283 LLGQHSVHTVLAGVSVGLALGMSVEETLPGLRD-PSIQLRLLVVPAIGGATLIDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S    L  +  + + R I  FG     G  ++    I+GK A  + D    T   PR 
Sbjct: 342 PTSSLAALNLLAELPARRRIAAFGDMLELGSYEEEGHRIVGKRAAAVVDRL-FTM-GPR- 398

Query: 423 EDPEKIRAE--IIHGI-PGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
               +I A+  +  G+ P  +   +  + +  A++  + + DV++V  KG
Sbjct: 399 ---ARIIADEAVASGLAPDAVVAVDTKQDLIDALKETMREGDVVLV--KG 443


>gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 453

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 175/465 (37%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +           G          +N +  P  I                
Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    GL Q +             TN+G  HI+  +T++    AKM +        +
Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD     +          V +   +   I  K +       + T+    K+ +F
Sbjct: 223 LVVCGNDD----FLGALPSAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PGE  + N ++   +   +G+    +   L+ +     R E +  +         Y
Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  ++ I   R I V G     G + +     +GK A +     ++   +
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             SE+   I+     G   +    N+ E I+  + ++ + D+++V
Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICEGDIILV 435


>gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 458

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 170/477 (35%), Gaps = 44/477 (9%)

Query: 6   LIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++   +   +    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +                N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAIATLWMKDVENP------PENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  I           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +            +   F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDETLSFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     G+++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468
                  K+ A+I  G        +R++A       I+ L      +DV++V A +G
Sbjct: 397 -----YGKLGAQIAEGA-KINFPKDRVKAYDSKEELIKELQAVVGTKDVVLVKASRG 447


>gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
 gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
          Length = 459

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 169/473 (35%), Gaps = 41/473 (8%)

Query: 6   LIYKDFPELINQLSIFPM-QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  +  ELI  +    +          V++DSR +    +F+ ++G K DGH +I Q  
Sbjct: 1   MISFNCSELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQCF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA   + S             +    ++VD+T K L   A+    K    ++ +TG+ 
Sbjct: 61  NAGATVCLTSK-------QIPTVTGCTAILVDDTAKALRDLAAWYRRKFDIPVVGITGSV 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +  +        G  +               P+ +              
Sbjct: 114 GKTSTKDMVSCVLSQQYKVLKTQGNFN----------NEIGLPLTVFNIDYS---HEAAV 160

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + +  S  G +  RL  I +      TN+G  HI+   +Q+    AK+ + EEL      
Sbjct: 161 IEMGMSGFG-EISRLTAIARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLV 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +    D      +K   +       +     +  L             ISV    ++  
Sbjct: 220 VL--NGDDPLLSSLKGKLSFRTVFYGMNVGSDYTALNYQPKGEQGTTFEISVNDCLYNVE 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            P+PG   VYNAL A    I + I   +++  +++    PG       N  G +I  D Y
Sbjct: 278 IPVPGIHNVYNALAAIAAGIEMKIPMEIIINGIKQF--SPGNMRQSIINHNGIKIINDAY 335

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  S++  +  ++ I +  R I V G     GD  +     +G    +     +VT  
Sbjct: 336 NASPQSMQAAINVLQEISSESRSIAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLVTV- 394

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVLVVAGKG 468
                D   I   +        E     N  EA++  +E++   D +++  KG
Sbjct: 395 ---GLDSRMISQAVADYGNSQTEIHHFENNKEALKYILEIVMPGDYILI--KG 442


>gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Clostridium botulinum H04402 065]
          Length = 462

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/466 (16%), Positives = 167/466 (35%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+T
Sbjct: 58  MAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMSEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A + +  +    +     
Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAENIEFDILEQGKTAYKC 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + I+   +   ++ L     R + V            
Sbjct: 280 FGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G+        + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGNEGYRAHREVSEYAKEKGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE  ++   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFSEAYKEGFEEINK--ENYKSFLNNQEAAKYIKNIIKDGDIILI 441


>gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 458

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 168/468 (35%), Gaps = 42/468 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +
Sbjct: 10  EQMVNGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENGAVATL 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +          N P++ V++T   L + A     +    ++ VTG++GK+S    
Sbjct: 70  WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKDI 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  +           G  +               P+ +    +   +  V  + +  SS 
Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    +++A   AK+ +   L            D  
Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N     ++ G      +     A+            ++  F  P+ G+  V
Sbjct: 229 LLTNRVPEMNLIAETVTFGDARANDYYPTTVALQATGTHFKMNRDENISFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + + L  L +   R E V T+S    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +    + IVV G     G+++      +GK+        + T          K+
Sbjct: 349 FHLMNGLDGFAKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKIAYVFT--------YGKL 400

Query: 429 RAEIIHGIPGFIEKGNRIEAI---RTAIEMLNK----QDVLVV-AGKG 468
            A+I  G         R++A       ++ L      +DV+++ A +G
Sbjct: 401 GAQIAEGAKINFPIE-RVKAYDNKEELVKELQAVVDVKDVVLIKASRG 447


>gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 452

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 95/456 (20%), Positives = 168/456 (36%), Gaps = 42/456 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +  ++  I  V++D+R + AG +FVA+ G + D H F  QA   GA A++VS    +   
Sbjct: 17  LHGQDLTIEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQAKDNGAGALLVSRKLDI--- 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +TR      A+ +  +    ++A+TG+SGK+SV      I  + G 
Sbjct: 74  ------DLPQIVVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKTSVKEMTAAILSQCGN 127

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           + +  G  +            T                    + + A+  G     +   
Sbjct: 128 TLYTAGNLNNDIGVPMTLLRLTHE-------------HEYAVIELGANHQGEIAWTVSLT 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A    NL   H++   +      AK  ++   LP +  AI+ AD+           +
Sbjct: 175 RPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPDDGIAIMNADNNDWLNWQSIIGS 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 S            +    +  + T++    D + L PLPG   + NAL AA L 
Sbjct: 234 RKTWRFSPNAANSDFSATNIHVTSHGTEFTLTTPTGDIEVLLPLPGRHNIANALAAAALS 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G   A +   L  L  VPGR   +        +   Y     S+   ++ +  +   
Sbjct: 294 MAVGASHAAIKAGLANLKAVPGRLFPIQLAENKLLLDDSYNANVGSMTAAVQVLSEMPGY 353

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI--------VTDDNPRSEDPEKIRAE 431
           R++VV      GD  +     +G+ A     D  +        ++D +   E      A 
Sbjct: 354 RVMVVGDMAELGDESEACHVQVGEAAKAAGLDRVLSAGTLSKAISDASEVGEHFADKSAL 413

Query: 432 I--------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           I           I   + KG+R  A+   +  L + 
Sbjct: 414 IERLKALITEKQIVTVLVKGSRSAAMEEVVHALQEN 449


>gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Ruminococcus obeum A2-162]
          Length = 456

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/470 (18%), Positives = 164/470 (34%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++  E+ +          +R+++ +++DSR I+   +FV IVG + D H FI
Sbjct: 1   MK--NLTLRNLTEVCSGTWHGDDALLDREVSAITTDSRKIEKDCLFVPIVGERVDAHRFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  +A+GA A +     S         ++ P + + ++ + +   A     +    ++ +
Sbjct: 59  PDVMAKGALATLSERELS--------DADYPYIQITSSLQAVKDIAEFYLQQLQLPVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + +    +    G  +               P+ +          
Sbjct: 111 TGSVGKTSTKEVIASVLKEKYRTLKTQGNFN----------NELGLPLTVF---RLREDD 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S  G         K      TN+G  H++    +     AK  +F  +LP 
Sbjct: 158 QIAVLEMGISDFGEMTRLTRIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFRSMLPS 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +    D      ++  H        +  +      + V          I +    F
Sbjct: 218 GHIVL--NGDDDKLATVEGYHGVKPVFFGLDAKRDVYADQIVSRGLKGVSCRIHMGEDAF 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D L P PG   VYNAL AA +    G+    +   +E L  + GRF      +    +  
Sbjct: 276 DVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIKRGIESLETIRGRF--KMIETENFLVVD 333

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
           D Y     S++  L  +     GR + + G     G+ +      +G+ A        + 
Sbjct: 334 DCYNANPMSMKASLDVLHD-GEGRRVAILGDMGELGENEISLHEEVGEHAAKCGIDVCIC 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 E    I        P      + +R   ++     + K D ++V
Sbjct: 393 V----GELSLHIAEAARKADPDFEVHYEKDRESLLKNLGGYVRKGDTILV 438


>gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 453

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 170/466 (36%), Gaps = 39/466 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +++     EL+       ++  E    ++S+D+R I    +F+A+ GN  +G+ ++ +
Sbjct: 5   LNEVLKAIDGELL-------IKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVE 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA   ++     +      +     ++ V + +  L   A     K    ++ +TG
Sbjct: 58  AIKAGATVAIID---EVNFKLEELNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V              G  +                I L   +  L S   
Sbjct: 115 STGKTSTKDLVAAFLSGKYSVFKTKGNFNNE--------------IGLPLMIFELDSSYD 160

Query: 183 THVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             V    +++  + HRL  I +      TN+G  HI+Y +T++     K  + +      
Sbjct: 161 IAVLEMGTNNFDEIHRLTNIARPDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENN 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +  I Y +D    + +   H      +    +             +     ++  G+   
Sbjct: 221 TLVINYEND--MLQKVNEDHEFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHR 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   + GE  + NAL+   +    GI    +   L        R EF+  N+        
Sbjct: 279 FKLNMVGEHNILNALLGIRISENFGITFEEMELGLNNFEATSMRLEFIKKNNFTIINDC- 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  L  ++T +  R I V G     GD  +    I+GK A+  AD  I+T  
Sbjct: 338 YNASPDSMKSALSVLKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAIGKAD-IILTT- 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  +  ++    G   F  K +          ++   DV++V
Sbjct: 396 ---GEFRDNYKSGFGKGAVSFNCKEDLQ---NYLCNLIKDGDVILV 435


>gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
 gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
          Length = 465

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 173/474 (36%), Gaps = 36/474 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++  E+       P    + ++ E+++DSR +  G +FVAI G K DGH FI
Sbjct: 1   MK--NLTLRNITEVCGGTYHGPEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P + A GA A +           A   ++  +++V +T + +   A     + P +++ +
Sbjct: 59  PGSFADGALAALAE--------VAPAETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            G+ GK+S    V  +  +   +    G  +               P+   +        
Sbjct: 111 IGSVGKTSTKEMVAAVLAQKYRTLKTEGNFN----------NEVGVPLTAFRMREE---D 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +  + +  +  G + HRL  I +     FTN+G  H+++  ++     AK  +F+ +  
Sbjct: 158 EIGVLEMGINHFG-EMHRLAKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVFDFMDE 216

Query: 240 KESPAIIYADDA---YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           K    +   DD     S+         G       +         V          I  E
Sbjct: 217 KGHVIVNGDDDKLSTISEVHGVAPVRFGIGEQGYSHPNDVWADGIVSHGLEGISCVIHTE 276

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ + P  G   +YNAL    + +  G+    +   +E    + GRF  +  +S   
Sbjct: 277 AGSFEVMIPSSGRHMIYNALAGTAVGLVYGLTLEQIRSGIESYMPLSGRFHIIKGDSYTV 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAI 414
                Y     S++  +  ++     R+ ++   G  G++++     +G  A +     I
Sbjct: 337 IDDC-YNANPGSMKASISILKEALGRRVAILGDMGELGEKEKAYHEEVGAYAAEQGIDLI 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFI----EKGNRIEAIRTAIEMLNKQDVLVV 464
                  SE   K   + +   P               +    E+L K D ++V
Sbjct: 396 CCV-GALSEAMAKAAVDYMETHPEAHCLVRHYPTVEALMDDCGEILEKNDTILV 448


>gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 458

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 2   IKRMLKQV--EQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 60  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  +           G  +               P+ +    +   +  V
Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y
Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     GD++      +GK+        + T  
Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT-- 396

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   +I        P        N+ E ++    +++ +DV+++ A +G
Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447


>gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
 gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
          Length = 454

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 165/463 (35%), Gaps = 32/463 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +
Sbjct: 6   EQMVNGTGLEEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +          N P++ V++T   L + A     +    ++ VTG++GK+S    
Sbjct: 66  WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  +           G  +               P+ +    +   +  V  + +  SS 
Sbjct: 120 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 166

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    +++A   AK+ +   L            D  
Sbjct: 167 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N     ++ G      +      +            ++  F  P+ G+  V
Sbjct: 225 LLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISFYLPVLGKHNV 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 285 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 344

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +    + IVV G     GD++      +GK+        + T          +I
Sbjct: 345 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 400

Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   P        N+ E ++    +++ +DV+++ A +G
Sbjct: 401 AEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 443


>gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
 gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
          Length = 468

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 12  IKRMLKQV--EQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 70  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  +           G  +               P+ +    +   +  V
Sbjct: 124 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 171 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 230

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 231 FVY--NGDEPLLTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 288

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y
Sbjct: 289 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 348

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     GD++      +GK+        + T  
Sbjct: 349 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT-- 406

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   +I        P        N+ E ++    +++ +DV+++ A +G
Sbjct: 407 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 457


>gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
 gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 2   IKRMLKQV--EQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 60  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  +           G  +               P+ +    +   +  V
Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEETTEV 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 221 FVY--NGDEPLLTNRVPEMNLATETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y
Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     GD++      +GK+        + T  
Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT-- 396

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   +I        P        N+ E ++    +++ +DV+++ A +G
Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447


>gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 457

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/465 (18%), Positives = 162/465 (34%), Gaps = 37/465 (7%)

Query: 12  PELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            E++  ++ +        + + V++DSR ++ G  F+ +VG K DGH +I  +  QG   
Sbjct: 7   KEIVKAVNGVLISGDLNTEFSNVTTDSRQVRKGDFFIPLVGEKFDGHDYIITSFEQGVSG 66

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +     +  +          ++ V++T   L + +S    K     + +TG+ GK+S  
Sbjct: 67  CLTQKDTAGYEGKV-------VIKVEDTLSALRMLSSYYRKKFDIPFVGITGSVGKTSTK 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  +  +        G  +               P+ +    S   +     V +  S
Sbjct: 120 DMVSSVLNKKFNVLKTQGNFN----------NEIGVPLTVFNLES---THEAAVVEMGMS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G        +K      TN+G  HI+   ++Q    AKM +FE L  +    +    D
Sbjct: 167 GFGEISRLTSIVKPDIAIITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVIL--NGD 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +K   N       +     +                I++  +++    P+PG  
Sbjct: 225 DNLLFGLKNLLNYRTVFYGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            ++NAL A    I + I    ++E + +      R   +  N         Y  +  S+E
Sbjct: 285 NIHNALAAIAAGIELNIPVKDIIEGIGEFSPGKMRLNIMDHNGIKIINDA-YNASPQSME 343

Query: 371 MILKNIRTI-TSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA--IVTDDNPRSEDPE 426
             +  ++ I    R I V G   +  D   +  MG      +     IV       E+ +
Sbjct: 344 AAINVLKDIAGDNRTIAVLGDMLELGDIAVKAHMGVGKFAFSKEVSYIVAV----GENGK 399

Query: 427 KIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I    +  G          +  EA +  ++     DVLVV  KG
Sbjct: 400 NIAEGALKAGAEEARVFHFKDNSEAGKFLLDFTKPGDVLVV--KG 442


>gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli CFT073]
 gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli CFT073]
 gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ABU 83972]
 gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 153-1]
          Length = 452

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGCHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
 gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
          Length = 462

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 169/466 (36%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVQ 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      I  ++ ++ V++T K L   A     K    ++A+T
Sbjct: 58  TAIEKGASLCIVS---EINFDKEKIGKSSYVIKVESTNKALLDLAKYYKSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G          +N +  P             S  
Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGN--------FNNEIGLP-----LMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +      
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEVTDFFSKDS 221

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   +D  S    +      C++ +            +     +  V    E     
Sbjct: 222 ILIVNGDNDLLSNF--ESDKYKVCKIGTEKKFDFNGENLNLEEESIEFDVLEQGETAYKG 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + ++   +   ++ L     R + +            
Sbjct: 280 FNVNVPGKHNVLNSLTAIACGKVLDMNYEDIQTGIKNLKATSMRLDIIKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ +   R I + G     G+        + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNVKGKRTIALLGSMRELGNEGYRAHREVSEYAKEKGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE  ++   EI      +    N  EA +    ++   D+++V
Sbjct: 398 GEFSEAYKEGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILV 441


>gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
 gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
          Length = 452

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 168/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRQAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
 gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
          Length = 468

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 149/442 (33%), Gaps = 24/442 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +++D+R +QAG +FVA+ G K DG  F   A+  GA A+++    S        R +
Sbjct: 28  FAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRMS 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T       A     K    ++AVTG++GK++            G        
Sbjct: 88  GAVIGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVCRTAAN 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            T                    V +     G             G  
Sbjct: 148 YNNEIGLPLTLLGMTGE-------------DTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H++   + +    AK  L    +      I+ ADDA    +  +A +    +  
Sbjct: 195 TNVGETHMELLGSIENIARAKAELVAA-IAPGGIVILNADDARVVAMRAQAADGVRILTY 253

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  I  + + +  N+ +  ++  G+  D+  PL G   VYNAL A     A+G+  
Sbjct: 254 GIRAEADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNALAALAAGFALGLSP 313

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   L +L     R+E     +    I   Y  +  S+   L+    +  GR I V G
Sbjct: 314 QEMQAGLSRLAPPKMRYEVHHVGAW-TFINDAYNASPASMRAALETTARLYPGRRIAVLG 372

Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                G         +G+ A       ++T      ++  +I                  
Sbjct: 373 DMLELGAASAEGHRSVGRTAAAEGFAVVIT----YGDEARRIYEAAAAAGCLCRHAATHE 428

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           EA      ML   D ++   KG
Sbjct: 429 EAANLLRGMLADGDTVLF--KG 448


>gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
 gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
          Length = 458

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 2   IKRMLKQV--EQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 60  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  +           G  +               P+ +    +   +  V
Sbjct: 114 SNGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 221 FVY--NGDEPLLTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + E L  L +   R E V TNS    I   Y
Sbjct: 279 YLPVLGKHNVYNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAY 338

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     GD++      +GK+        + T  
Sbjct: 339 NASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT-- 396

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   +I        P        N+ E ++    +++ +DV+++ A +G
Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 447


>gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
 gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
          Length = 454

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 165/477 (34%), Gaps = 41/477 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+I  +        + ++ ++S+D+R I  G +F+A+ G   DGH F  QA+  GA A
Sbjct: 6   LSEIIQAVRGSYGYPADVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAQAMEAGAVA 65

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V                    L+VD+T + L   AS    +    ++ +TG+ GK++  
Sbjct: 66  VVTERPVD----------GARCLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKTTTK 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +         S    G  +  +    +N +  P  +    +    +      + +  +
Sbjct: 116 EMI--------WSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAA-----VIEMGMN 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G         K      TN+G  HI+   +Q+    AKM + +         +  + D
Sbjct: 163 HKGEISRMSTSCKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLIL--SRD 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 ++   +      SV  +   ++   + A       TI    +         GE 
Sbjct: 221 DRILSKVQVYGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEH 280

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL A  +  A+G+D+A ++  L        R   +  N     +   Y    +S++
Sbjct: 281 NVKNALAAFCVGAALGMDNADIIAGLADFRPEGMRQNIIEENGVTYILDC-YNAAPDSMK 339

Query: 371 MILKNIRTI-TSGRIIVVFGCGGDRDQG---KRPIMGK-IALDLADIAIVTDDNPRSEDP 425
             L  +  +   GR I V G   +  +G       +G+ +     DI +    N      
Sbjct: 340 ASLSVLGQVSVRGRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDILLCFGKNSNY--- 396

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGH---ETVHIVT 476
             I      G          +R E       +L + D ++  G +G    E    + 
Sbjct: 397 -YIEGACDKGFDRANTAHFDSREELAEHLKGILKEGDAVLFKGSRGMKLEEVYEAIK 452


>gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 462

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+T
Sbjct: 58  MAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVAAVLSEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A   +  +    +     
Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKG 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + I+   +   ++ L     R + V            
Sbjct: 280 FSVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G         + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRAIALLGSMRELGSEGYRAHREVSEYAREKGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 459

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 137/412 (33%), Gaps = 22/412 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L    +      +  VS+DSR      +F A+ G   D H ++ +A  
Sbjct: 1   MITLSLSQIASILEAQLIGDGNVTVENVSTDSRKAVNNGLFFALKGENFDAHDYVMKAAE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A VV               N   L+V ++R  L   A  L  K    ++A+TG+SG
Sbjct: 61  QGCVAAVVEHPTEG---------NIAQLIVKDSRLALGQLAKWLREKINPKVVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q+  +          +     +       P+ L              +
Sbjct: 112 KTTVKEMTASILQQCAVDFD------DVLFTQGNFNNDIGVPLTLL---RLTEKHKFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +       N+   H++   +      A        L     AI
Sbjct: 163 ELGANHIGEIAYTTALAQPDVALVNNVMAAHLEGFGSLDGVATA-KGEIFRGLTHHGVAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I     Y ++  K       +  S        + + +          +     +     P
Sbjct: 222 INQAHNYQQKWQKEIGQHEVQYFSYDNPQADFYAEHIQFSEQGASFVLHTPQGNVQIDSP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V + LE   +V GR   +        +   Y   
Sbjct: 282 YLGEHNVSNALAATALAMNVGATLAQVKKGLETPSLVKGRLFPIHPCDNLLLLDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI 414
             S++  +  ++   + R+ VV   G  GD        +G+ A     D+ I
Sbjct: 342 VGSMKSAISVLQKYPAFRVFVVGDMGELGDNTPLCHQEVGEFAWAAKLDLVI 393


>gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
          Length = 453

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 174/465 (37%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +           G          +N +  P  I                
Sbjct: 118 GKTSTKDLVAAVLSYKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    GL Q +             TN+G  HI+  +T++    AKM +        +
Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD     +          V +   +   I  K +       + T+    K+ +F
Sbjct: 223 LVVCGNDD----FLGALPEAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PGE  + N ++   +   +G+    +   L+ +     R E +  +         Y
Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  ++ I   R I V G     G + +     +GK A +     ++   +
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             SE+   I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435


>gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
          Length = 460

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 158/455 (34%), Gaps = 29/455 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  L        + ++  V++DSR ++ G IFVA  G + DGH F  +A+ QGA  +V
Sbjct: 8   KLLAGLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+                  ++  ++   + +  +    ++   ++ VTG+ GK++    
Sbjct: 68  VNHPVPGVPEEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                   G +    G         Q+N L  P  +     +   SS     + +  S  
Sbjct: 121 TYAALSGFGETIKTEGN--------QNNELGMPRTL-----MRLESSTEYAVIEMGMSHA 167

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G         +   G  T +G  HI    +Q+    AK+ +    LP+ +P ++  DD +
Sbjct: 168 GEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDPF 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            ++    AH                 L           V    E   F    P  G   V
Sbjct: 227 LRKAALPAHVRPVWFSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A      +G D+  V+  L       GR + V  +     I   Y    +S++  
Sbjct: 287 ANALAAYCAATRLGCDAKRVIRGLSNFEQT-GRRQKVVDSEGVTVIEDCYNANPDSMKAA 345

Query: 373 LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L   +     R   + G     G+  +     +G++A +     ++T      E  ++  
Sbjct: 346 LAMFKDFPCKRRFALLGDMLELGELSREAHEELGRLAAESGLYCLIT----YGEQAKRTA 401

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   +  EA    +  +   D ++V
Sbjct: 402 VVAAAKGVETLHADSYREAADALLSRVQPGDAILV 436


>gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
 gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
          Length = 454

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 165/463 (35%), Gaps = 32/463 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +
Sbjct: 6   EQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +          N P++ V++T   L + A     +    ++ VTG++GK+S    
Sbjct: 66  WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  +           G  +               P+ +    +   +  V  + +  SS 
Sbjct: 120 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 166

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    +++A   AK+ +   L            D  
Sbjct: 167 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N     ++ G      +      +            ++  F  P+ G+  V
Sbjct: 225 LLTNRVPGMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISFYLPVLGKHNV 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + E L  L +   R E V TNS    I   Y  +  ++E  
Sbjct: 285 YNTLASMAIAKHFGVTWEEMKEGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAA 344

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +    + IVV G     GD++      +GK+        + T          +I
Sbjct: 345 FHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 400

Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   P        N+ E ++    +++ +DV+++ A +G
Sbjct: 401 AEGAKINFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRG 443


>gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum GMI1000]
 gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum GMI1000]
          Length = 482

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/460 (18%), Positives = 166/460 (36%), Gaps = 29/460 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +  G +FVA++G + D H F+P  +A+GA A++
Sbjct: 13  DAAAWMAGAHLVGPDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVL 72

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS             S   +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 73  VSRPP----VGIPDLSGVAVLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEM 128

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +   +   + ++     +++           P+ L +  +      +  + +  +  
Sbjct: 129 ISAVFACAVGEAARLATAGNLNNDI-------GLPLTLFRLTAQHR---LAVLELGMNHP 178

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +       N  R+H ++  + +A       +   L               
Sbjct: 179 GETEVLAAIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANG 238

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +        AG R +             V    + Q++ +   G  F F  PL G    
Sbjct: 239 GEYAPLWRAAAGTRRVLDFGIEGGAVSAAVTDTADGQRIDVHAPGLRFSFTLPLLGVHNA 298

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A    +A GI   ++ + L     V GR +    +  G  I   Y    +S+   
Sbjct: 299 RNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAA 358

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429
           +  + T+ + R +V+   G  G +       +G  A     D  + T      E    + 
Sbjct: 359 IDALATLPAPRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLAT-----GELARHMV 413

Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                G   F       EA I   +  +     ++V  KG
Sbjct: 414 EAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 447


>gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 460

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 158/461 (34%), Gaps = 32/461 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  L        E ++  V++DSR ++ G IFVA  G K DGH F  +A+  GA  +V
Sbjct: 8   KLLAGLVPADFIREEVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+                  ++  ++   + +  +    ++   ++ VTG+ GK++    
Sbjct: 68  VNHPVEGVPAEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                   G +    G         Q+N L  P  +     +   S+     + +  S  
Sbjct: 121 TYAALAGFGETIKTEGN--------QNNELGMPRTL-----MRLESNTEYAVIEMGMSHA 167

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G         +   G  T +G  HI    +Q+    AK+ +   L       +    D  
Sbjct: 168 GEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNGLPEGAPLVL--NYDDK 225

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQ 311
                K   +      S+  +   +    +    +     +   E   F    P  G+  
Sbjct: 226 FLRAAKLPAHVKPVWFSLADENADVCALSIRQEEDGMSFVLEDQEEGTFVVKIPAMGKHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL A      +G D   V++ L       GR + V  +     I   Y    +S++ 
Sbjct: 286 VANALAAYCAATRLGCDPRGVIKGLSNFEQT-GRRQKVVHSKGVTVIEDCYNANPDSMKA 344

Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L   +     R   + G     G+  +     +G++A +     +VT      E+ ++ 
Sbjct: 345 ALAMFKEFPCKRRFALLGDMLELGELSREAHEELGRLAAESDLYCLVT----YGENAKRT 400

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                      +   N  EA    +  +   D L+V A +G
Sbjct: 401 AVVAAAKGVKTLHANNYREAADALLNRIEPGDALLVKASRG 441


>gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
          Length = 462

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 172/464 (37%), Gaps = 35/464 (7%)

Query: 10  DFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            F E++N +     +Q    K N++S+D+R I    IF+A+ G   +G+ +I  A   GA
Sbjct: 5   TFDEIVNAVQGKVVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVASDNGA 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              ++      +D    I   T I+ V++T+K L   A     K    ++ +TG++GK+S
Sbjct: 65  SMCIIDEIKYRED---EIEKGTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGSNGKTS 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +              G          +N +  P            +S  +  + + 
Sbjct: 122 TKDLLAAALSSKYKVFKTQGN--------FNNEIGLP-----LMIFKLDNSYDIAVLEMG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            ++        +  K      TN+G  HI    +++    AK+ + +         +   
Sbjct: 169 MNNLNEIHRMAEAAKPDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGD 228

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--L 306
           +D     +     N      +    G  ++   +    N  + ++   GK F+  F   +
Sbjct: 229 ND----LLSGVKSNKFSIYTTGMENGNNLNACDIELKENFVEFSVEENGKKFEETFHVEI 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + N+L+A      +G+++  + E L+ L     R + +            Y    
Sbjct: 285 PGKHTISNSLLAIACGRILGMENKDIKEGLKNLQTTAMRMDLIKGKKFNILNDC-YNANP 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT--DDNPR 421
           +S++  +  ++ + S R I V G     G++       +G+ +       ++T  + N  
Sbjct: 344 DSMKAAIDVLKNVESSRRIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLLTFGEYNKA 403

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
            E+  K           +    +  E I+  +   L + D ++V
Sbjct: 404 FEEGFK-----SSTKAEYKAFDDYSEGIKYLVNGYLKEGDTVLV 442


>gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Clostridium botulinum F str. 230613]
          Length = 462

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/466 (16%), Positives = 164/466 (35%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS    +      +  ++ ++ V+NT K L   A     K    ++A+T
Sbjct: 58  MAIEKGAALCIVS---EINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVGAVLAEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A   +  +    +     
Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKC 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + I+   +   ++ L     R + V            
Sbjct: 280 FGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G         + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           tropica CNB-440]
 gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinispora tropica CNB-440]
          Length = 471

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 94/474 (19%), Positives = 162/474 (34%), Gaps = 43/474 (9%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+   ++           +   V  DSR +  G +FVA  G + DGH +   A
Sbjct: 1   MIPLSLAEVAAAVNGQLVAADPSVAVTGSVEFDSRKVGPGGLFVAFPGERVDGHDYAEGA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
           I  GA A++             + +  P+++VD+ +  L   A  +  + P+  ++ +TG
Sbjct: 61  IRAGAVAVL----------GTRVVAGVPMVLVDDAQVALGRLARAVVDRLPDLTVVGLTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK+S    +  +  R G +    G  +             P                 
Sbjct: 111 SSGKTSTKDVIAALTARLGPTVAPPGSFNNELGHPYTALQADPE-------------TRY 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +   A   G   +  + +        N+G  HI    +++    AK  L    LP E 
Sbjct: 158 LVLEKGARGVGHVSYLCEVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAA-LPAEG 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +  R      R            +  V     +   T+         
Sbjct: 217 LAVLNADDDLVAAMATRTRARVVRYGEAAE-ADVRAVDVVLDERGRPSFTLVTPEGRAPV 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              L G  QV N+L AA +   +G+    +   L +L +V  R   V     G  +  D 
Sbjct: 276 RLGLTGRHQVSNSLAAAAVARELGMPVTELATALGELGLVSSRRMDVFERVDGVTVIDDS 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTD 417
           Y     S+   L+ +      R I V G     G  +Q     +G++A +L  D  +V  
Sbjct: 336 YNANPASMAAALRALAGFRRRRTIAVLGYMAELGPYEQDGHVEVGRLAAELGVDRLLVV- 394

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E    I              ++  ++  A+      L   DV++V  KG
Sbjct: 395 ----GEAAAPIHEGATSVRDWEGESVQLTDQAGAVEVLRGDLRPGDVVLV--KG 442


>gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 468

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 91/486 (18%), Positives = 173/486 (35%), Gaps = 60/486 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 12  IKRMLKQV--EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 70  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  I           G  +               P+ +    +   +  V
Sbjct: 124 SNGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 171 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 230

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 231 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 288

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y
Sbjct: 289 YLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAY 348

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     G+++      +GK+             
Sbjct: 349 NASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLI------------ 396

Query: 419 NPRSEDPEKIR---------AEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
                DP KI          A+I  G              N+ E +R    +++ +DV++
Sbjct: 397 -----DPAKIAHVFTYGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVL 451

Query: 464 V-AGKG 468
           + A +G
Sbjct: 452 IKASRG 457


>gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
 gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
          Length = 458

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 91/486 (18%), Positives = 173/486 (35%), Gaps = 60/486 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 2   IKRMLKQV--EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 60  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  I           G  +               P+ +    +   +  V
Sbjct: 114 SNGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y
Sbjct: 279 YLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAY 338

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     G+++      +GK+             
Sbjct: 339 NASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLI------------ 386

Query: 419 NPRSEDPEKIR---------AEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
                DP KI          A+I  G              N+ E +R    +++ +DV++
Sbjct: 387 -----DPAKIAHVFTYGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVL 441

Query: 464 V-AGKG 468
           + A +G
Sbjct: 442 IKASRG 447


>gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS678]
          Length = 460

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 151/413 (36%), Gaps = 34/413 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E ++Q         +  I ++SSDSR I A  +FVA+ G + DGH F   AI  GA A++
Sbjct: 7   ETLSQHLGTFRVGDDVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATAIENGAAALM 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V    +          + P L+V + +K +      +  +     +A+TG++GK+SV   
Sbjct: 67  VERELAF---------DIPQLIVPDCQKAMGAIGVYVRDQINPICVALTGSNGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  I        +  G   + I       RLT      + +  +                
Sbjct: 118 IATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKG------------ 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +     G+     +  N            QA            L  +  AII ADDA
Sbjct: 166 ---EIDYTSGLVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDA 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-----KQQVTISVEGKDFDFLFPL 306
           ++  +  +A        S        H+  +   H        +  ++  G+    + PL
Sbjct: 223 FADFMSVKARPYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPL 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QV NAL AA +CIA+G+    + E L +L  V GR +          I   Y    
Sbjct: 283 AGRHQVSNALAAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQLGRV-RLIDDSYNANP 341

Query: 367 NSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
            S+   +  ++ I+  R +V+   G  GD        +G++A     D    T
Sbjct: 342 VSVGAAIAWLKEISENRCLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCT 394


>gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CMR15]
          Length = 485

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 87/460 (18%), Positives = 165/460 (35%), Gaps = 26/460 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +    ++   +   +  I  V++DSR +  G +FVA++G + D H F+P  +A+GA A++
Sbjct: 13  DAAAWMAGAHLVGPDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVARGAAAVL 72

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS   +         S   +L V +TR  L   A+    + P  ++AVTG++GK++V   
Sbjct: 73  VSRRLADM-PDLPDLSGVAVLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTVKEM 131

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +   +   + ++     +++           P+ L +  +      +  + +  +  
Sbjct: 132 ISAVFACAVGEAARLATAGNLNNDI-------GLPLTLFRLTAQHR---LAVLELGMNHP 181

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +       N  R+H ++  + +A       +   L               
Sbjct: 182 GETEVLAAIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDVANG 241

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                     AG R +             V    N Q++ +      F F  PL G    
Sbjct: 242 GDYAPLWRAAAGTRRVLDFGIEGGAVSAAVTDTANGQRIDVHAPDLRFSFTLPLLGVHNA 301

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A    +A GI   ++ + L     V GR +    +  G  I   Y    +S+   
Sbjct: 302 RNALAATACALAAGIAPEVIAQALSAFAPVKGRLQRKPGHHGGLVIDDTYNANPDSVRAA 361

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIR 429
           +  + T+ + R +V+   G  G +       +G  A     D  + T      E    + 
Sbjct: 362 IDALATLPAPRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLAT-----GELTLHMV 416

Query: 430 AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                G   F       EA I   +  +     ++V  KG
Sbjct: 417 EAFGGGARHFAS----AEALIEQGVPAIAPGATVLV--KG 450


>gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
 gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/468 (17%), Positives = 162/468 (34%), Gaps = 37/468 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  ++  +  N + +     + ++I  V  DSR I+ G++++  VG + DGH FI
Sbjct: 1   MK--NMTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ   +GA   +     +            P + V++    L   A     +    I+ +
Sbjct: 59  PQVFDKGALCTLSEKDLNNPKG--------PYIKVESVATALKDIAEFYRKQLSCKIIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + +         G                  P+ + K        
Sbjct: 111 TGSVGKTSTKEIIASVLEEKFKVLKTEGN----------YNNEIGEPLTILKIRDEHEVA 160

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +        S   + HRL  + +      TN+G  H++    +   F AK  +F+    
Sbjct: 161 VIEMGI----SDFEEMHRLAKVSRPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASK 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +    D      +K  +        +      + +K         +V I    K+
Sbjct: 217 DCFVVL--NGDDDKLSNVKEVNGHAPVFFGIDTDRDVMAIKYESLGIQGTKVKIKYFDKE 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG   +YNA+ A  +    G+    +   +  L  + GR     TN       
Sbjct: 275 LDTVIPIPGYHMIYNAMAAVCIGSYFGMTLDEIDSGIRNLKAIGGRNNIFTTNGITVIDD 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             Y     S++  +  +    +GR + + G     G+  +     +G+ A+   DI +  
Sbjct: 335 C-YNANPMSMKASINVLSQ-ANGRKVAILGDMFELGENSKKLHKEVGQAAVGKVDILVCI 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    + I    I G    +   N+ +        + + D +++
Sbjct: 393 -----GNLSKDIAEAAIEGGCNTLYFPNKADFEDNLSAYIKEGDTVLI 435


>gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
 gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
          Length = 452

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLYPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
 gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
          Length = 452

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 453

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 146/384 (38%), Gaps = 24/384 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I++VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS          
Sbjct: 19  GESIDIDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  N P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I +  G   
Sbjct: 70  HLPINVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRHCGSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L +  +         + + A+  G   +  D ++ 
Sbjct: 130 YTAGNFN----------NDIGVPLTLLRLTAE---HQFAVIELGANHIGEIAYTTDLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F  L       +    + +    +   H   
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPADGVAIVNADSNDFPHWQVMLNHKTV 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R               V  +    + T+     +   L PLPG   + NAL AA L ++
Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAASLAMS 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G     V   L +L  VPGR   +  +     +   Y     S+    + +  +   R+
Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356

Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406
           +VV   G  GD        +G+ A
Sbjct: 357 MVVGDMGELGDEAPECHRQVGEAA 380


>gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LF82]
 gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 452

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 480

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 171/478 (35%), Gaps = 41/478 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+I  +   P    +  RK+   V  DSR ++ G +F A+ G + DGH F  +
Sbjct: 1   MIALSLAEIIGIVGGQPHDIPDADRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAAR 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA A++ +         A + S    +VV + +  L   A  +  +    ++A+TG
Sbjct: 61  AVADGAVAVLAARPVPAAAADAPVPS----IVVPDVQAALGALARAVVLRLDATVVALTG 116

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R G + +  G          +N +  P       A+S   +   
Sbjct: 117 SAGKTSTKDLIAQLLRRHGPTVWTPGSL--------NNEIGLP-----LTAMSADETTRH 163

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240
             + + A   G  ++  D      G   N+G  HI     ++A   A  ++        +
Sbjct: 164 LVLEMGARGKGHIRYLTDLTPPRLGLVLNVGTAHIGEFGGREAIAEAKGELVEALPAAAE 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ ADD   + +  R                     ++ A   +   T+       
Sbjct: 224 GGVALLNADDPLVRAMATRTKARTVLFGEAADADVRAENVRL-ADGGRPSFTLHTPTGCS 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           +    L GE  V NAL AA +   +G+    +   L +       R E          + 
Sbjct: 283 EVTMRLYGEHHVSNALAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERRDGVTVVN 342

Query: 360 VDYAHTSNSLEMILKNIRTITS------GRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409
             Y     S+   L+ +  + +      GR   V G     G+    +   +G++A+ L 
Sbjct: 343 DAYNANPESMRAALRALVAMGTAGQAEGGRTWAVLGPMAELGEESLAEHDAVGRLAVRLN 402

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  V        D          G      +   +   A+      L   DV++V
Sbjct: 403 VSKLVAVGGQEAAWLD----MGAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLV 456


>gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E482]
          Length = 452

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQITDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU028]
          Length = 451

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 159/469 (33%), Gaps = 38/469 (8%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ N +      +  ++ IN VS DSR I  G +F+   G   DGH FI QA+
Sbjct: 1   MINVTLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A+         + +       PI+ V++T   L   A          ++AVTG++
Sbjct: 61  NDGAGAVFSEKENKYSEGNQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT                     
Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDE-----------DTEI 160

Query: 185 VSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    G  Q  L     +      TN+G  H+    +++    AK  +   L     
Sbjct: 161 SILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGI 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 +      V +  +     +          H+  V        +      +   +
Sbjct: 221 FIYDGDEPLLKPHVNQVKNAKLISIGLNSDNTYTCHMNDVKNEGIHFTI-----NQKEHY 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G   + NA +A  +   +G++  ++  ++  + +   R E   +++    I   Y
Sbjct: 276 HLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  S++  +  +  +  GR I++       G   Q     +G+   D     + T   
Sbjct: 336 NASPTSMKAAIDTLSGM-KGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYT--- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++   I       +       N+ + I+T I  +  +D ++V  KG
Sbjct: 392 -FGKEASYIHDSGKIFVKEAKYFDNKEQLIQTLISQVKPEDKVLV--KG 437


>gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
 gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
          Length = 454

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 168/476 (35%), Gaps = 58/476 (12%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +
Sbjct: 6   EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +          N P++ V++T   L + A     +    ++ VTG++GK+S    
Sbjct: 66  WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  I           G  +               P+ +    +   +  V  + +  SS 
Sbjct: 120 VTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 166

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    +++A   AK+ +   L            D  
Sbjct: 167 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N     ++ G      +      +            ++  F  P+ G+  V
Sbjct: 225 LLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISFYLPVLGKHNV 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + + L  L +   R E V T+S    I   Y  +  ++E  
Sbjct: 285 YNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAA 344

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +    + IVV G     G+++      +GK+                  DP KI
Sbjct: 345 FHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLI-----------------DPAKI 387

Query: 429 R---------AEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                     A+I  G              N+ E +R    +++ +DV+++ A +G
Sbjct: 388 AHVFTYGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRG 443


>gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 468

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 159/453 (35%), Gaps = 32/453 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R + AG +FVA+ G   DG  F  +A+ +GA A++V         +A   +   +
Sbjct: 31  ITTDTRKVVAGDLFVALRGEHFDGTAFAAEALERGAAAVLVDQKTPATALTALDTARGGV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV ++T +     A     K    ++A+TG++GK++       +    G         + 
Sbjct: 91  LVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLIAGSFT 210
                      TP                 T   VE    G+ Q            G  T
Sbjct: 151 EVGLPLTLLGITPE---------------DTAAVVEIGMRGMGQIAALAPITAPSIGIVT 195

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H++   + +    AK  L    +P     I+ ADD     +   A +    +   
Sbjct: 196 NVCEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVAAMRSSAADGVRVMTYG 254

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 +  + +  + +  +  ++ +G+  ++  PLPG   V NAL A      +G+   
Sbjct: 255 ISAAADVRAEALQCMADGSRFMVTWDGERHEYAIPLPGRHNVSNALAALAAGFVLGMTPQ 314

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L  L     R+E     +    I   Y  + +S+   L+    +  GR I V G 
Sbjct: 315 EMQVGLTHLTAEKMRYEVHQIGAW-TLINDAYNASPSSMRASLETTAALYPGRRIAVLGD 373

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIEKGN 444
               G   +     +G+ A +L    +VT         E  E        G P      +
Sbjct: 374 MLELGAAAEKAHRDVGRRAAELGFAMVVTYGKQAQWTHEAAEA------AGCPACYHAAS 427

Query: 445 RIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
             +A       L   D ++  G +G     I+ 
Sbjct: 428 HADAAAYLRSHLMDGDTVLFKGSRGMRMEQIIA 460


>gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 458

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 87/473 (18%), Positives = 170/473 (35%), Gaps = 34/473 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +   E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +
Sbjct: 2   IKRMLKQV--EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A +     +          N P++ V++T   L + A     +    ++ VTG
Sbjct: 60  AVENGAVATLWMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V  I           G  +               P+ +    +   +  V
Sbjct: 114 SNGKTSTKDIVTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEV 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L     
Sbjct: 161 AVLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGV 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                  D           N     ++ G      +      +            ++  F
Sbjct: 221 FVY--NGDEPLLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y
Sbjct: 279 YLPVLGKHNVYNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAY 338

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  ++E     +  +    + IVV G     G+++      +GK+        + T  
Sbjct: 339 NASPTAMEAAFHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFT-- 396

Query: 419 NPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   +I        P        N+ E +R    +++ +DV+++ A +G
Sbjct: 397 --YGRLGAQIAEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRG 447


>gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia fergusonii B253]
          Length = 452

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli M863]
 gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli STEC_7v]
          Length = 452

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TW10509]
          Length = 452

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
 gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
          Length = 452

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 100/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLDAIKAGLANLKAVPGRLFPIQLVENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
 gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
          Length = 452

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 100/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LPK   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPKNGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia sp. 4_1_40B]
 gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli H736]
 gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
 gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli]
 gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K12 substr. W3110]
 gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli DH1]
 gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Escherichia coli ETEC H10407]
 gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia coli DH1]
 gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1520]
 gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
          Length = 452

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 452

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 455

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 120/394 (30%), Gaps = 34/394 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L        +  I+ V+ DSR I    +FV + G + DGH FI
Sbjct: 1   MKMQ------LAEIAKALDTTIEGNSDPVISSVAFDSRKINENALFVPLKGER-DGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A +    +  +        N P++ VD+T   +   A     K    ++ +
Sbjct: 54  NSAIANGAVATLWEKGHPNK------PDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPMTILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSSLVKPDVCVITMIGEAHIEFFGSRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   ++  ++   A               +  +         +      + 
Sbjct: 214 DGEFIYNGDEPLLRQRAEKISQAKSTFG----FNDQDTIYALEFKSYMHHASFVTSSSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R ++   +     +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAICVGHHFGETDDEIAASLSNFTPTANRMQWRKGDVGEDIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG 391
            Y     + + +L +   +     GR I V G  
Sbjct: 330 IYNSNPTAAKAVLTSFGQVEVPEGGRRIAVLGDM 363


>gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 155-74]
          Length = 452

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 97/473 (20%), Positives = 174/473 (36%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI-------- 414
             S+   ++ +  +   R++VV      G   +     +G+ A     D  +        
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHA 396

Query: 415 VTDDNPRSEDPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           ++  +   E      A I           +   + KG+R  A+  A+  L + 
Sbjct: 397 ISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEAVRALQEN 449


>gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei Ss046]
 gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii Sb227]
 gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ATCC 8739]
 gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SE11]
 gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sp. D9]
 gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046]
 gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227]
 gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli ATCC 8739]
 gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11]
 gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)]
 gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli BL21(DE3)]
 gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Escherichia coli 042]
 gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli W]
 gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 85-1]
 gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           dysenteriae CDC 74-1112]
 gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           flexneri CDC 796-83]
 gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli EC4100B]
 gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli EPECa14]
 gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E128010]
 gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LT-68]
 gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1180]
 gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1357]
 gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli KO11]
 gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H120]
 gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H489]
 gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TA007]
 gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 117-3]
 gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1167]
 gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 5216-82]
 gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 3594-74]
 gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Escherichia coli UMNK88]
          Length = 452

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 3431]
          Length = 452

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 EDL933]
 gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. EC1212]
 gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1125]
 gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1044]
          Length = 452

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIVWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 453

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 79/465 (16%), Positives = 174/465 (37%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++  +  +I  VS+D+R I+ G +F+A+ G   +G+ ++  A 
Sbjct: 1   MLELNLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NT + L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +           G          +N +  P  I                
Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAG--SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    GL Q +             TN+G  HI+  +T++    AKM +        +
Sbjct: 163 AILEMGMRGLGQIKELAEIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD     +          V +   +   +  K +       + T+    K+ +F
Sbjct: 223 LVVCGNDD----FLGALPSAEYKIVKTGVGENFKVGAKNIALEELSSKFTVYDGEKEEEF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PGE  + N ++   +   +G+    +   L+ +     R E +  +         Y
Sbjct: 279 SLDMPGEHNISNLILGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  ++ I   R I V G     G + +     +GK A +     ++   +
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGD 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             SE+   I+     G   +    N+ E I+  + ++   D+++V
Sbjct: 398 -FSEN---IKEGYGEGCTVY---ENKEELIKDLLNIICDGDIILV 435


>gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 454

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 165/463 (35%), Gaps = 32/463 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    Q+    I  VS D+R I+ G ++V I G + DGH F+ +A+  GA A +
Sbjct: 6   EQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGAVATL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                +          N P++ V++T   L + A     +    ++ VTG++GK+S    
Sbjct: 66  WMKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  I           G  +               P+ +    +   +  V  + +  SS 
Sbjct: 120 VTSILATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVAVLEMGMSSR 166

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    +++A   AK+ +   L            D  
Sbjct: 167 GEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVY--NGDEP 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                    N     ++ G      +      +            ++  F  P+ G+  V
Sbjct: 225 LLTNRVPEMNLAAETVTFGDARANDYYPTTVTLQATGTHFKMNRDENISFYLPVLGKHNV 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + + L  L +   R E V T+S    I   Y  +  ++E  
Sbjct: 285 YNTLASMAIATHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAA 344

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +  +    + IVV G     G+++      +GK+        + T          +I
Sbjct: 345 FHLMNGLDGFTKKIVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFT----YGRLGAQI 400

Query: 429 RAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   P        N+ E +R    +++ +DV+++ A +G
Sbjct: 401 AEGAKINFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRG 443


>gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401]
 gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 4343-70]
 gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-218]
 gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-272]
 gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-227]
          Length = 452

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSMGKQSHAISTA 400


>gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580]
 gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580]
          Length = 491

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 174/474 (36%), Gaps = 39/474 (8%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   E+  +++  +    +  R I  VS+DSR +  G +F+ + G + +GH+F  QA
Sbjct: 36  MITRTVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQA 95

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G  A++ +                P+++VD+T + L   A     +    ++ VTG+
Sbjct: 96  FQEGVAAVLWNR------SEPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGS 149

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +             +G    +     +       P+ +    +      V 
Sbjct: 150 NGKTTTKDMI----------HAVLGTEYKVHKTEGNYNNHIGLPLTIL---AMPEDTEVA 196

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G         +      TN+G  H+    +++    AK+ +   L  + + 
Sbjct: 197 ILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTL 256

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +       + ++    N          +      +       ++     V G +  F 
Sbjct: 257 IYV-----GDEPLLTERLNQPPYDTKTFGEDPAFDYQLEDMTQTEEGTAFRVRGIENGFF 311

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NAL A      + +  A + E L KL V   R E V T      I   Y 
Sbjct: 312 IPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYN 371

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S++  ++ +  +   G+ I+V G     G+ ++     +G+     +   + T   
Sbjct: 372 ASPTSMKAAIELVEQMKGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFT--- 428

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEM-LNKQDVLVV-AGKG 468
              E    I    +   P            ++++  ++   N  D+++V A +G
Sbjct: 429 -YGELGAYIAKGALKHFPEHRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRG 481


>gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
 gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
          Length = 456

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 174/474 (36%), Gaps = 39/474 (8%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   E+  +++  +    +  R I  VS+DSR +  G +F+ + G + +GH+F  QA
Sbjct: 1   MITRTVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G  A++ +                P+++VD+T + L   A     +    ++ VTG+
Sbjct: 61  FQEGVAAVLWNR------SEPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +             +G    +     +       P+ +    +      V 
Sbjct: 115 NGKTTTKDMI----------HAVLGTEYKVHKTEGNYNNHIGLPLTIL---AMPEDTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G         +      TN+G  H+    +++    AK+ +   L  + + 
Sbjct: 162 ILEMGMSAKGEIDFLTRLARPDIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTL 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +       + ++    N          +      +       ++     V G +  F 
Sbjct: 222 IYV-----GDEPLLTERLNQPPYDTKTFGEDPAFDYQLEDMTQTEEGTAFRVRGIENGFF 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NAL A      + +  A + E L KL V   R E V T      I   Y 
Sbjct: 277 IPVLGKHNVKNALAAIAAGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYN 336

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S++  ++ +  +   G+ I+V G     G+ ++     +G+     +   + T   
Sbjct: 337 ASPTSMKAAIELVEQMKGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFT--- 393

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEM-LNKQDVLVV-AGKG 468
              E    I    +   P            ++++  ++   N  D+++V A +G
Sbjct: 394 -YGELGAYIAKGALKHFPEHRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRG 446


>gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
 gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
          Length = 477

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 88/488 (18%), Positives = 162/488 (33%), Gaps = 53/488 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++     + I+              +E + DSR +  G +FVA+ G + DGH F+  
Sbjct: 4   LTDVLEALTGKHIDMQKPL-------TFSEAAIDSRQVIPGSLFVALPGVRTDGHQFVGA 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTP----------------ILVVDNTRKFLSLFA 106
           A   GA   +V         +  +R+ +P                 L V+NT + L   A
Sbjct: 57  AFQNGAILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLA 116

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                +    ++ +TG+ GKS+    + ++  +   +    G  +               
Sbjct: 117 RYWRRRLNIRVIGITGSVGKSTTKELIAEVLSQRYRTLKNPGNLN----------NEIGL 166

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
           P+ L +         +           L     D  +   G  TN+G  H +   +Q+A 
Sbjct: 167 PLTLLRLGKGHERAVLEMGFYVPGEIALL---CDIAQPQVGVITNIGTVHAERAGSQEAI 223

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A+ +             I   D      M     A      +  +      +      
Sbjct: 224 --ARGKSELVQALPVGGYAILNHDDPWVRWMADKTQAQILYYGLTPEAHLWADEIETMGL 281

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  +    + F    PL G   V  AL A  + I  G+    ++  L++      R 
Sbjct: 282 EGIRFRLHYRRESFSVRVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGLQR-SPTQLRL 340

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG 403
             V ++S    +   Y  +  S    L+ +  +  GR I V G     G  +Q     +G
Sbjct: 341 VAVRSSSGALILDDTYNASPESTLASLQILHEM-KGRRIAVLGDMLELGPYEQSGHEKVG 399

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIP--GFIEKGNRIEAIRTAIEMLNKQD 460
             A ++AD+ +        E  + I       G+         +  +AI     +L + D
Sbjct: 400 VRAAEVADVLVAV-----GELSKIIARAAREAGMKPEKIFWVPDTSQAIEVLRPLLKEGD 454

Query: 461 VLVVAGKG 468
           V+++  KG
Sbjct: 455 VVLI--KG 460


>gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 451

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 160/469 (34%), Gaps = 38/469 (8%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ N +      +  ++ IN VS DSR I  G +F+   G   DGH FI QA+
Sbjct: 1   MINVTLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A+         + +       PI+ V++T   L   A          ++AVTG++
Sbjct: 61  NDGAGAVFSEKENKHSEGNQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT                     
Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDE-----------DTEI 160

Query: 185 VSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    G  Q  L     +      TN+G  H+    +++    AK  +   L     
Sbjct: 161 SILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGI 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 +      V +  +     +          H+  V        +      +   +
Sbjct: 221 FIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHMNDVKNEGIHFTI-----NQKEHY 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G   + NA +A  +   +G++  ++  ++  + +   R E   +++    I   Y
Sbjct: 276 HLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  S++  +  + ++  GR I++       G   Q     +G+   D     + T   
Sbjct: 336 NASPTSMKAAIDTL-SVMKGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYT--- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++   I       +       N+ + I+T I  +  +D ++V  KG
Sbjct: 392 -FGKEASYIYDSGKVFVKEAKYFDNKDQLIQTLISQVKPEDKVLV--KG 437


>gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412]
 gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
 gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412]
 gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
          Length = 452

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
 gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
          Length = 452

 Score =  140 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400


>gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
 gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
          Length = 451

 Score =  140 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 78/467 (16%), Positives = 157/467 (33%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+    IN V+ DSR I+   +F+   G   DGH F+ QA+
Sbjct: 1   MINVTLEQIKHWIPCEIDEQYLSHSINGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        L +         PI+ V++T K L   A          ++AVTG++
Sbjct: 61  KDGAGASFSEKGTELSEDIEG-----PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT        +           H
Sbjct: 116 GKTTTKDMIESVLTTEFKVKKTQGN----YNNEIGMPLTILDLDEDTEISILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                SS           +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 172 EIELLSSIA---------QPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      + +        V          H+  +        +          F  
Sbjct: 223 YDGDEPLLKPHLEQLNKARLISVGLGNSNTLVCHVDDIETEGIAFTI-----NDKESFTL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+    + +++  + +   R E   T +    I   Y  
Sbjct: 278 PILGTHNMKNATIAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  + ++  GR I++       G+  Q     +G    + A   + T     
Sbjct: 338 SPTSMKAAIDTLSSM-EGRKILILADVLELGENSQSMHEEVGAYLNNKAIDVLYT----Y 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++   I     + +P      ++ E I+    ++ + D ++V  KG
Sbjct: 393 GDEARFIFNIGQNEVPTAQHFDDKSELIKELKIIVKENDKILV--KG 437


>gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
 gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
          Length = 457

 Score =  140 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 160/477 (33%), Gaps = 45/477 (9%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I K   E+   + I      +    I  VS DSR I  G +FV   G   DGH F+  A
Sbjct: 1   MIKKTLQEIEQMIKIENDVSSFHNTSIQGVSIDSRKIGRGNLFVPFKGENSDGHRFVEDA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I +GA A                  + PIL+V++T   L   A     +    +  +TG+
Sbjct: 61  IEKGAAAAFWQKDVPNP------PLHLPILIVEDTLTALQELARSYRDELKIKVAGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++       +           G          +N +  P  I     L+      + 
Sbjct: 115 NGKTTTKDMTANLLSLQYKVQKTEGN--------YNNHIGLPLTI-----LALEEDTEIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G         +  A   TN+G  H+    +++    AK+      L +   
Sbjct: 162 VLEMGMSGRGEIDFLTKLARPDAVIITNIGESHLQDLGSREGIAEAKL-EIVNGLQENGL 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I Y D+    E +K  + +             ++   +    +     I+V    F   
Sbjct: 221 VIYYGDEPLLDEKLKSYNGSAALRTFGRTGKNDVYPMDIKQNDSGSTFGINVSSGKFY-- 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   V NAL A       G+    + E    L +   R E +   S    I   Y 
Sbjct: 279 LPVLGTHNVLNALAAMIAAAHFGVPYEKMNEGFASLKLTNMRMELLEGQSGEKIINDAYN 338

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S+   ++ I  +    + I+V G     G +++      GK         + T   
Sbjct: 339 ASPTSMNAAIELIANLPGYKKKILVLGDMLELGPQEEDFHYSTGKSVDPEKVDYVFT--- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVV-AGKG 468
                  K+   I  G    +    R+ A       I    + ++ + +++V A +G
Sbjct: 396 -----FGKLGEYIAKGAKEVLPHE-RVAAFTDKQPLIEELKKHVDPETIILVKASRG 446


>gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
 gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
          Length = 452

 Score =  140 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 536]
 gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia
           coli 536]
 gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 60-1]
          Length = 452

 Score =  140 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 154/403 (38%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV      G   +     +G+ A
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHAQVGEAA 379


>gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
 gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli AA86]
 gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
          Length = 452

 Score =  140 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANNDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400


>gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
 gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
          Length = 455

 Score =  140 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 85/478 (17%), Positives = 167/478 (34%), Gaps = 38/478 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K   E++      P  +    I  V++D+R ++   +F+ + G   +GH F+ QA   
Sbjct: 5   TAKKIAEMVKGTLTDPT-YENIVIQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFEN 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  A++ +              +  +++VD+T   L   +     +    ++ VTG++GK
Sbjct: 64  GVSAVLWNK------SEPNPPQDQAVILVDDTLGALQELSKAYLQELGTRVIGVTGSNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  + Q         G  +          L+ P    +A             + 
Sbjct: 118 TTTKDMLHAVLQTQFRVHKTEGNFNNH-IGLPLTVLSMPEDTEVA------------VLE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S  G            A   TN+G  H+    +++    AK+ +   L        I
Sbjct: 165 MGMSGKGEIDLLTRLANPEAAVITNIGESHMQDLGSREGIAEAKLEITNGLKKDGILIYI 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                  + ++ +   +         +G    L+ V    +    +I    K F    P+
Sbjct: 225 -----GDEPLLNKRSYSCRTKTFGADEGNDYQLEDVKQTEDGTHFSIKGIDKTFF--IPV 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V NA+ A    I  GI      + L  L V   R E + + S    I   Y  + 
Sbjct: 278 LGKHNVLNAIAAFAAGIHFGITVENAAKGLSGLKVTGMRLELLKSESGVSIINDAYNASP 337

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            S++  ++ I ++   G+ ++V G     GD +Q      G +    A   + T      
Sbjct: 338 TSMKAAIELIESMEGYGKKMLVLGDMLELGDLEQEFHTECGAVINPAAIDYVFT----YG 393

Query: 423 EDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVTN 477
           +    I A               ++ E ++   E   K D+++  A +G +   IV +
Sbjct: 394 KLGAFIAAGAHRHFDQERVSHFNDKAELLQAVAEKAEKGDLILFKASRGMKLEEIVKD 451


>gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Photorhabdus asymbiotica]
          Length = 459

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 158/406 (38%), Gaps = 26/406 (6%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L  +   ++ + +   +   Q  +  I +V++D+R ++ G +F+A+ G + D H F   A
Sbjct: 4   LTLQQLAQVTDGVLNQVTERQAIDIYIRDVTTDNRKVENGSLFIALKGERFDAHDFSADA 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A++VS           +  N P +VV++TR  +   A  +  +    ++A+TG+
Sbjct: 64  VKAGAGALLVSR---------VLAINCPQVVVEDTRLAMGKLAGWVRQQSKARVVALTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+SV      I ++ G + +  G  +               P+ L             
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLN----------NDIGVPLTLF---RLTEQHEFA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V + AS  G   + ++ ++       NL   H+    +  +   AK  +F  L  K + 
Sbjct: 162 VVELGASHVGEIAYTVEMVRPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLPEKGTA 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I    + ++            R       G   +   +          +       +  
Sbjct: 222 IINVESNDWAYWQQVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEIN 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG+  V NAL A+ L I++G     +   L +L  VPGR   +        +   Y 
Sbjct: 282 LPLPGKHNVANALAASALAISVGATLRDIRLGLSELRAVPGRLFPINLAEGKLLLDDTYN 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407
               S+ + ++ +  +   R++VV   G  G++ +     +G+ A 
Sbjct: 342 ANVGSMTVAVQVLSQMPGYRVMVVGDIGALGEQSEDYHRQIGETAA 387


>gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
 gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
          Length = 453

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 163/473 (34%), Gaps = 42/473 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I+     L + L+   +   + +I+ V++D+R I  G +FVA+ G K D H F   A+ 
Sbjct: 1   MIHVSLQTLADALNA-ELIGTDTQIDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVK 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G+ A++VS           +  + P LVV +TR  L      +  + P  ++ +TG+SG
Sbjct: 60  AGSGALLVSK---------RLPVDVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I +  G   +  G  +               P+ L +  +         +
Sbjct: 111 KTSVKEMTAAILRECGNVLYTAGNFN----------NDIGVPLTLLRLTAE---HDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +       NL   H++   +      AK  +F+ L       I
Sbjct: 158 EMGANHAGEIAYTTALARPETALVNNLSAAHLEGFGSLAGVARAKGEIFDGLPENGIAVI 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++ ++    K       R      +G       V         T+       D   P
Sbjct: 218 NADNNDWANWQHKLNGKTVWRFSPTFGEGIDFSATDVNISPLNTAFTLHSPQGSIDVSLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL AA L +++G     V   L  L  V GR   +  +     +   Y   
Sbjct: 278 VPGRHNIANALAAAALAMSVGASPENVRAGLATLQSVKGRLFPIVISEGKTLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPR- 421
             S+    + +  +   R++ V      G   +     +G+       D       + R 
Sbjct: 338 VGSMTAAAQVLAEMPGYRVMAVGDMAELGAESEHCHRQVGEAIRDAGIDKVFSIGHDSRI 397

Query: 422 ----------SEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQ 459
                      ED   + A +   +           G+R  A+   +  L + 
Sbjct: 398 ISDVSGCGEHLEDKAALTARLTSLLSEHAVITVLIKGSRSAAMEQVVRALQEN 450


>gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9]
 gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9]
          Length = 452

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 171/450 (38%), Gaps = 39/450 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q        V +DSR I+AG +FVA+ G + D H F+   +A+GA   VV   + L    
Sbjct: 16  QGDNTGFTRVVTDSRAIRAGDLFVALKGERFDAHDFVADVLARGAAGAVVRCDFDLP--- 72

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P++ V + R  L   A+    +    +  +TG++GK++V   ++ +  +    
Sbjct: 73  -----GAPLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGKTTVKEMLRGMLAQWLGD 127

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI- 202
              +      ++           P+ L        +  +        +H  +   L G+ 
Sbjct: 128 EAVLATGGNFNNDIGM-------PLTLLGLRDTHRAAVIEMGM----NHAGELTYLSGLA 176

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N  R HI +  + +A   AK  +F   L  +  A+I  DD      +     
Sbjct: 177 RPTVALVNNALRAHIGHFGSVEAIAQAKAEIFAG-LAADGVAVINRDDPNRDLFVAA--A 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           AG R++  G     +H      + +  ++T+         + P+PG+  + NAL A  + 
Sbjct: 234 AGRRIVEFGLAAGDVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANALAACAVA 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+G+    ++  L+    VPGR  F    S    I   Y    +S+   +  +    SG
Sbjct: 294 SAMGVPLPAMVAGLQAFAGVPGRLAFRRAVSGLTVIDDTYNANPDSVRAAI-AVLAARSG 352

Query: 383 RIIVVFGCGGDRDQGKRPIMGKI--ALDLA--DIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           R  +VFG  G+  +G   +  +I  A   A  D  +             +  E       
Sbjct: 353 RRWLVFGDLGELGEGAPALHAEIGQAAKAAGLDGLV---------TLGTVSREAAAAFGP 403

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                + +EA+  A+  L   D ++V  KG
Sbjct: 404 GALACDSVEAVLEALAPLGAADSVLV--KG 431


>gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri VA-6]
          Length = 452

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 147/403 (36%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+ H  +  R   +     +  N             A            LP+   AI
Sbjct: 158 ELGAN-HQGEIARTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV      G   +     +G+ A
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEDCHVQVGEAA 379


>gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 456

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 87/470 (18%), Positives = 169/470 (35%), Gaps = 38/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++   +       P    + ++  V +DSR  + G +FV IVG + D H FI
Sbjct: 1   MK--NLTLENIARVCGGTYYGPADKLQEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ +  GA A +               ++ P + V+++ + +   A     +    ++ +
Sbjct: 59  PQVMEAGALATLSER--------VLDNADFPYIAVESSLQAVKDIAEFYLKQLQIPVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +   +    G  +               P+ +          
Sbjct: 111 TGSVGKTSTKEVIASVLNQKYHTLKTQGNFN----------NELGLPLTVF---RLRDGD 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S  G         +      TN+G  H++    +     AK  +F+ L P+
Sbjct: 158 EIAVLEMGISDFGEMTRLAQIARPDTCVITNIGTCHLENLGDRNGVLKAKTEIFKFLRPE 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +    D      +K           +  + +    K V         TI +    F
Sbjct: 218 GHIVL--NGDDDKLITVKEYEKIKPVFFGMSNECQVYGDKIVSRGLKGMTCTIHLGDTAF 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG   VYNAL AA +    G+ +  +   +E L  + GRF  +    +   +  
Sbjct: 276 TVDIPMPGRHMVYNALAAAAVGNIYGLTTDQIKAGIESLEPISGRF-RMIETDKFLIVDD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416
            Y     S++  L  ++   +GR I V G     G+ +      +G+ A     D+ I T
Sbjct: 335 CYNANPMSMKASLDVLQD-GAGRKIAVLGDMGELGENEVQLHEEVGEHAGKCDIDVLICT 393

Query: 417 DDNPRS--EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               R+  E  ++   ++       I + +R   +      +   D ++V
Sbjct: 394 GKLCRNMAERAQRTNPDL-----KVIYEPDRESLLEHLEGYVQDGDTILV 438


>gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
 gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
          Length = 457

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 166/470 (35%), Gaps = 54/470 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           K + +   +    I+ +        +  I+ +++DSR+I  G IF+A+ GN  DGH F  
Sbjct: 9   KFRKIFSANLNSEIDVID-------DFLIDGITTDSRYINPGEIFLALRGNNFDGHDFAN 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+ +GA A++V         S       P + V +T       A     +    ++A+T
Sbjct: 62  IAVDKGAIALIVDH-----HISVKSTKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAIT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +  +    G+                +N +  P  +          ++ 
Sbjct: 117 GSVGKTTTKELISAVLSNYGIVHKTKEN--------YNNEIGVPKTL-------LELTRQ 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  +E    GL++  L            TN+G  HI    +++A   AK  L  E+ P
Sbjct: 162 HDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIGRLGSKEAIAQAKCELLAEMPP 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +    + +    +   K            G       L             +      
Sbjct: 222 DATAIFNHDNSLLVQTAKKVWKGETISYGLEGGDITGELLDNQTLRVEGMDFPL------ 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PLPG     N L A  +   + +D  +++     +++  GR      +     + 
Sbjct: 276 -----PLPGRHNALNYLGAIAVAKCLKLDCNVLM-QGISVNLPKGRSRRYQLSGDILLLD 329

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415
             Y     S++  L+ ++ I   R + + G     G++       +G+ A  L  D  +V
Sbjct: 330 ETYNAGLESMKAALELLKEIPGQRHLAILGTMKELGEKSAELHREVGETAKALGIDHLLV 389

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
             D     DPE I   I  G  G + +    + E I+   E++   D L+
Sbjct: 390 LVD-----DPEAIA--IADGALGMVTECLPTQEELIKRLTEIVQPGDRLL 432


>gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
 gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
          Length = 452

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 154/403 (38%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIYVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV      G   +     +G+ A
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHAQVGEAA 379


>gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia fergusonii ECD227]
          Length = 452

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 173/473 (36%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIA--------I 414
             S+   ++ +  +   R++VV      G   +     +G+ A     D          +
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHV 396

Query: 415 VTDDNPRSEDPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           ++  +   E      A I           +   + KG+R  A+   +  L + 
Sbjct: 397 ISTTSGVGEHFADKTALITHLKSLIAEQQVITILVKGSRSAAMEEVVRALQEN 449


>gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 456

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 96/472 (20%), Positives = 160/472 (33%), Gaps = 48/472 (10%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +D++     E++              I  VS+DS  I+   +FV I+G + D H FI  A
Sbjct: 7   RDIVKATKGEVL-------CGDMNIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           IA GA A++ S           +  N P + V NT   L               + VTG+
Sbjct: 60  IANGAVAVLTSEHDE-------MTGNVPYIRVSNTTMALQEIGKYYGKLMIMPKIGVTGS 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    +              G +++           +P                + 
Sbjct: 113 VGKTTTKEMIACALSAGYKVFKTSGNSNSQIGVPLTLLKMSPD-------------DQIA 159

Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            + +  S  G +  RL  + +L     TN+G  HI+  +T+      K  + + +  K+ 
Sbjct: 160 VIEMGMSMRG-EMSRLSELVELDDAVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              I  DDA   +      +             F    KV        V I  +   +D 
Sbjct: 219 IVFINGDDAILNKHKSELRHRIITFGLGNDNDYFATNIKVKNGGVDFTVNIKNK-GSYDA 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + GE  V NALVA  +    GI+    ++ L     V  R +    N     I   Y
Sbjct: 278 RLNVLGEHNVRNALVAIAVAERHGIEVTEAIKALAGYEGVSMRQQITDVNGV-TIIDDSY 336

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIM-GKIALDLADIAIVTD 417
             + +S++  +  +     +GR I V       GD+       + G +A    D  I+  
Sbjct: 337 NASPDSMKAGIDVLCDYNNNGRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELIL-- 394

Query: 418 DNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     + A I  G  G +     R E     ++ L   D ++   KG
Sbjct: 395 -------FGTMAANIGDGFNGSYKLFKKREEINEYLLKNLKSGDAILF--KG 437


>gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
          Length = 458

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 92/449 (20%), Positives = 160/449 (35%), Gaps = 35/449 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S DSR +Q G+++ A+ G + DGH F+PQA + GA   +VS   +  +  A   ++ 
Sbjct: 13  TGLSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAHA 72

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ VD+  + +S  A+         I+ VTG+ GK++  S +  +   +  +    G  
Sbjct: 73  AVVKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLASAFEADCTKGNF 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGS 208
           +           T P                   + +E    GL Q        +   G 
Sbjct: 133 NNELGMPYTLLQTEP---------------SCEVLVLEMGMDGLGQIADLARIARPKYGV 177

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-----RAHNA 263
            TN+G  H++   T+     AK  + E L   E  A + AD  Y+  +++          
Sbjct: 178 ITNVGVSHLERLGTRDNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIR 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R                     +   T++  G+       + G   V NA  AA + +
Sbjct: 238 IVRFDGTAENSDVYATDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVGL 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
             GI    V   L  +    GR     ++         Y  +  S+   L  + + + SG
Sbjct: 298 EFGIALDQVAAALSGVEPESGRQALKRSSRGFLVFDDAYNASPESMAAALNVLASFSASG 357

Query: 383 RIIVVFGCGGD---RDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHG--- 435
           R I V G  G+    +       GK A     D+ +      R      I      G   
Sbjct: 358 RRIAVLGDMGELGSAEVEGHINTGKAAAQAGIDMLVCVGAMSRY-----IADAARKGGMA 412

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   IE  +   A  T +++    DV++V
Sbjct: 413 VKSVIEVADADAAATTVLDIAQPGDVVLV 441


>gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 1313]
          Length = 457

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 166/471 (35%), Gaps = 37/471 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +++     E++  +    +          +S+DSR+I+ G +F+ ++G + DGH +I  A
Sbjct: 2   EILK--CEEVVKAVGGTLISGEVNTVFYNISTDSRNIKQGDLFIPLIGERFDGHNYIASA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA   +                   ++ V +T K L   A     K     + +TG+
Sbjct: 60  LEHGALGSLTQKETE-------PFPGKVLIKVSDTLKALRDLAVYYRQKFKIPFVGITGS 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S    V  +  +        G          +N +  P  I      +   S    
Sbjct: 113 VGKTSTKEMVAAVLSKGFKVLKNQGN--------FNNEIGVPLTI-----FNLDKSHEAA 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S  G        +K      TN+G  HI+   ++     A      E L ++  
Sbjct: 160 VVEMGMSGFGEISRLTSIVKPDIAIITNIGVSHIEKLGSKNNILKA-KMEIFEGLNEKGL 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI+  DD     +                     +  +           I + GK++   
Sbjct: 219 AILNGDDKLLYGLNNLLKFRTVFYGMEEGLDLRAYNVE-SLGEKGSTFDIEIRGKEYRVR 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   VYNAL    + I +GI    ++E +E+      R + +  N         Y 
Sbjct: 278 IPVPGIHNVYNALAGIAVGIELGIPPEKIVEGIEEFSPGKMRLDIINYNGLKIINDA-YN 336

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S+E  +  ++ I+  GR   V G     G+  +     +GK A       IV    
Sbjct: 337 ASPQSMEAAIDVLKDISGEGRTFAVLGDMLELGEFSKSAHMEVGKYAASKGIDYIVAVGE 396

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            RS     +R  +  G       E  + ++A +   E +   DVL+V  KG
Sbjct: 397 YRS---NIVRGAVEAGAKEEKVFEFKDNMDAAKFLKEFVKSGDVLLV--KG 442


>gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15]
          Length = 452

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400


>gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 460

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/455 (18%), Positives = 159/455 (34%), Gaps = 29/455 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  L        + ++  V++DSR ++ G IFVA  G + DGH F  +A+ QGAE +V
Sbjct: 8   KLLAGLVPAGKLTSDPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVV 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+                  ++  ++   + +  +    ++   ++ VTG+ GK++    
Sbjct: 68  VNHPVPGVPEEKA-------ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQM 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                   G +    G         Q+N L  P  +     +   SS     + +  S  
Sbjct: 121 TYAALSGFGETIKTEGN--------QNNELGMPRTL-----MRLESSTEYAVIEMGMSHA 167

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G         +   G  T +G  HI    +Q+    AK+ +    LP+ +P ++  DD +
Sbjct: 168 GEIDRLARAARPDVGIITCIGVSHIGNLGSQENICKAKLEICNG-LPEGAPLVLNYDDPF 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            ++    AH                 L           V    E   F    P  G   V
Sbjct: 227 LRKAALPAHVRPVWFSLSDENADVCALSIRQETDGMSFVLEDQEHGTFVVNIPAMGRHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A      +G D+  V+  L       GR + V  +     I   Y    +S++  
Sbjct: 287 ANALAAYCAATRLGCDAKRVIRGLSNFEQT-GRRQKVVDSEGVTVIEDCYNANPDSMKAA 345

Query: 373 LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           L   +     R   + G     G+  +     +G++A +     ++T      E  ++  
Sbjct: 346 LAMFKDFPCKRRFALLGDMLELGELSREAHEELGRLAAESGLYCLIT----YGEQAKRTA 401

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     +   +  EA    +  +   D ++V
Sbjct: 402 VVAAAKGVETLHADSYREAADALLSRVQPGDAILV 436


>gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 453

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/466 (16%), Positives = 159/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++   +      Q+  R I  V+ DSR I+   +F+   G   DGH F+ QA+
Sbjct: 1   MINVTLKQIKAWIDCEIDEQYLNRSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A       SL +         PI+ VD+T + L   A          ++AVTG++
Sbjct: 61  KDGAGASFYQKDVSLSENIEG-----PIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT                    H
Sbjct: 116 GKTTTKDMIESVLNTEFKVKKTQGN----YNNEIGMPLTILDLDKDTDISILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S+           +      TN+G  H+    +++    A        L      
Sbjct: 172 EIELLSTIA---------EPDIAVITNIGESHMQDLGSREGIAQA-KSEITIGLKPNGTF 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I   D+   K  +++   A C  + +      +              TI+ + +   +  
Sbjct: 222 IYDGDEPLLKPHVEQIQQANCISIGLEQGNSLVCSVNEEIDTEGIAFTINHQQQ---YEL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+    +  +++++ +   R E   T  +   I   Y  
Sbjct: 279 PILGIHNMKNAAIAIAIGQELGLSYETIQHNIKRVKLTGMRMERHETEQQVTVINDAYNA 338

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S++  +  +  +   +IIV+      GD  Q     +G    +     ++T      
Sbjct: 339 SPTSMKAAIDTLSNMNGRKIIVLGDVLELGDNSQSMHEEVGSYLQNKQIDQLIT----FG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   I       +       ++ + I    +++  +D +++  KG
Sbjct: 395 SEATFIYNTGKQYVDEAHHFNDKDKLISHITQIVQPEDKVLI--KG 438


>gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei 53G]
          Length = 452

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLNAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
 gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
          Length = 461

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 172/469 (36%), Gaps = 36/469 (7%)

Query: 6   LIYKDFPELINQ--LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L   +  ++      +I   Q  +  I  +S+DSR I    +F+A+ G + D H FI   
Sbjct: 4   LSLGNIVQITKGKLSNIAQNQADQLIIKSISTDSRKIDEDCLFIALAGERFDAHDFIADV 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G+ A++V+    +         + P L+V +T   +   A+ +       I+A+TG+
Sbjct: 64  KEKGSVAVLVNREIDV---------DCPQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+SV      I +  G + +  G  +               P+ L             
Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLN----------NDIGVPLTLF---RLAPEHRFA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKES 242
            + + A+  G   + ++ +K  +    NL   HI+   + +    AK  +F        +
Sbjct: 162 VIELGANHIGEIAYTVNMVKPDSALVNNLFSAHIEGFGSLEGIAQAKGEIFTHLKEQGTA 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              + ++D    E    A            +    +  ++         T+       + 
Sbjct: 222 IINLDSNDLPLWEHHLNARQTKWSFSLSAQRNADFYPTEIAVKQFITNFTLHTPEGCVEV 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG   + NAL A+ L ++ G     +   L  L  VPGR   V   +    +   Y
Sbjct: 282 TLPLPGRHNIANALAASALALSAGATLEDIRLGLSTLKAVPGRLYPVELTTGKMVLDDTY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGK-RPIMGKIALDLADIAIVTDDN 419
                S+   L+ +  +   +I  V G   +  +D  K    +G+ A +    +++T   
Sbjct: 342 NANDGSMIAGLQVLSQLPGYKIFFVAGDMAELGKDSEKCHRDVGRFAHNAGIDSVLTV-- 399

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              E    I  E   G   F  K +    +   I +L + DV+ V  KG
Sbjct: 400 --GEHSHFISDE-NQGGQHFAFKADL---LAQLIPLLQQHDVVSVLVKG 442


>gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 468

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 88/496 (17%), Positives = 155/496 (31%), Gaps = 67/496 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+      +   +   L+    Q   R +  V  DSR +Q G +FV + G + DGH F 
Sbjct: 1   MKM------ELSRIATVLNAVGEQTDGRTVTRVQIDSRVVQPGDLFVCLPGERVDGHSFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA A++        D         P+L+V +T K L   A    G     ++AV
Sbjct: 55  ADAVRKGAVAVLAQRPLPEVD-------GAPVLLVRDTFKALGDLAVAWRGSVQSRVVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   + Q        +      +            +               +
Sbjct: 108 TGSAGKTTVKELIAQTLAAEMSVAKNHKNLNNQIGLPLSMLAASGE-------------E 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + V  S  G  +              N+G  H++   + +    AK  L   +   
Sbjct: 155 DVWVMEVGISRQGDMEELAPIASPDLAVIHNIGPAHLEGLGSLRGVAEAKAHLLTSVRRG 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A I   D        +      R +S   +        +          + +E +  
Sbjct: 215 G--AAIVNRDYPELWEAAQRIFPSVRAMSTQNEKAPYFCTYLGPSQQGGVFLLRLEDERL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   P  G     N + AA     +G+ +  +++ L K  +   RF        G  I  
Sbjct: 273 EVDLPFLGAHFAENVVAAASAAYLLGMSAGSIVQALAKAQLPDQRF-AAHHLGFGTLIDD 331

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            Y     S+   ++    +   R +V+         G    +G  A   A+   +     
Sbjct: 332 TYNANPLSMSRAIQAATELAGNRPLVLV-------LGDMLELGSEAE--AEHVRL----- 377

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVTNGE 479
             E           G    + +G   +A+   +            G KG      V  G 
Sbjct: 378 -GE------RAAASGCAAVVYRGGFAKAVARGLAQA---------GFKG--RFQEVRAGA 419

Query: 480 KKMSVDCDIIREILGL 495
           +        + E LGL
Sbjct: 420 ELPP-----VLEDLGL 430


>gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UTI89]
 gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli APEC O1]
 gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
 gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli UTI89]
 gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli APEC O1]
 gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IHE3034]
 gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UM146]
 gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 110-3]
 gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 16-3]
 gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H252]
 gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H263]
 gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
          Length = 452

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400


>gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae Sd197]
 gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
 gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
          Length = 452

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 166/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V         
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQVGG------- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 451

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 160/469 (34%), Gaps = 38/469 (8%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ N +      +  ++ IN VS DSR I  G +F+   G   DGH FI QA+
Sbjct: 1   MINVTLEQIKNWIDCEIDEKHFKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A+         + +       PI+ V++T   L   A          ++AVTG++
Sbjct: 61  NDGAGAVFSEKENKHSEGNQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT                     
Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDE-----------DTEI 160

Query: 185 VSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    G  Q  L     +      TN+G  H+    +++    AK  +   L     
Sbjct: 161 SILEMGMSGFHQIELLSHIAQPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGI 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 +      V +  +     +          H+  V        +      +   +
Sbjct: 221 FIYDGDEPLLKPHVNQVKNAKLISIGLNSDSTYTCHMNDVKNEGIHFTI-----NQKEHY 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G   + NA +A  +   +G++  ++  ++  + +   R E   +++    I   Y
Sbjct: 276 HLPILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  S++  +  + ++  GR I++       G   Q     +G+   D     + T   
Sbjct: 336 NASPTSMKAAIDTL-SVMKGRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYT--- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++   I       +       N+ + I+T I  +  +D ++V  KG
Sbjct: 392 -FGKEASYIYDSGKVFVKEAKYFDNKDQLIQTLISQVKPEDKVLV--KG 437


>gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis]
 gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 457

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 181/481 (37%), Gaps = 49/481 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   G 
Sbjct: 7   KNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A++   +            N  +++VD+T   L   A     +    ++ VTG++GK++
Sbjct: 66  AAVLWDRSVPNP------PENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +             +G    +     +       P+ +    +   +  +  + + 
Sbjct: 120 TKDMI----------HAVLGTQYRVHKTGGNFNNHIGLPLTVL---AMPENTEIAVLEMG 166

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S+ G            A   TN+G  H+    +++    A+ +L      KE   +IY 
Sbjct: 167 MSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDGVLIYI 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     +++ A++   +    G       L+ V         TI      F    P+ G
Sbjct: 225 GDE---PLLQNAYSCQTKTYGTGTHN-DYQLQDVSQSEEGTHFTIKGIENTFF--IPILG 278

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NA+ A       GI      + L  L V   R E + T+S    I   Y  +  S
Sbjct: 279 KHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTS 338

Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA--IVTDDNPRS 422
           ++  ++   ++   G+ ++V G     GD ++      G +     D    + T      
Sbjct: 339 MKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISP--DKIDRVFT----YG 392

Query: 423 EDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476
           +    I    +          + EK + ++A++   E  +K D+++  A +G +   IV 
Sbjct: 393 KLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIVK 449

Query: 477 N 477
           +
Sbjct: 450 D 450


>gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
 gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
          Length = 489

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/496 (17%), Positives = 160/496 (32%), Gaps = 47/496 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + ++       L+   +  P       ++ VS DSR ++ G +FVAI G + DGH ++
Sbjct: 5   MTIGEVAEAVAGRLVEGANGVPEGA--VALHAVS-DSRQVENGSVFVAIQGERVDGHDYV 61

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
                QGA A +V                 P +VVDNT   L   A     +      P 
Sbjct: 62  ASVADQGAVAAIVDHEVPGAA--------VPQIVVDNTVTALGDLAKANIARRRASGEPF 113

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+ GK++     + +    G +   +G  +          LT            
Sbjct: 114 TIIGITGSVGKTTTKDLTKALLSTLGPTVAPVGSFNN-EIGLPLTALTVGE--------- 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   H              +G  H+    + +    A      
Sbjct: 164 ---HTRYFVAEMGANHVGEIAHLTTIAPPDIAVVLKVGVAHLGEFGSVERIAQA-KTEIV 219

Query: 236 ELLPKESPAIIYADDAYSKEVMK----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             L     A++  DD + + +           G    + G            +       
Sbjct: 220 RGLLPNGIAMLNTDDEHVEAMSAVAPGEVLRFGIDESNAGRDALHACDIVTDSFDRASFT 279

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVG 350
            ++ +G+       +PG   V NAL AA +   +G+    +     E+ H+ P R     
Sbjct: 280 MVAGDGEQSQVALAIPGAHNVMNALAAAMVAHRLGMPLEDIARVLGEQRHISPHRMAVST 339

Query: 351 TNSRGGRI---YVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG---GDRDQGKRPIM 402
               G R       +    +S+   L  +   + G    + V G     G  ++     +
Sbjct: 340 VERGGARFTLIDDSFNANPDSMHAGLDGLARWSEGAQYRVAVLGAMLELGGDEKQLHRSI 399

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           G  A +     +V   +P  +  + +  E+  G        +   A+  A       D++
Sbjct: 400 GAYAAEHGIDEVVAVGSPTDQALDALAGELAQGAKNA----DGAMAVEWAHSAAQADDMI 455

Query: 463 VVAGKGHETVHIVTNG 478
           V   + HE   ++  G
Sbjct: 456 VRIAREHEGTVVLLKG 471


>gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
 gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
          Length = 451

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 157/465 (33%), Gaps = 44/465 (9%)

Query: 6   LIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  + P ++   L         + IN++++D+R I    IF+A+ G K DGH FI  AI
Sbjct: 1   MILSEIPNILSKNLKYLSKPLSNQLINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA  ++V    S+             ++V +T       A+    K    I+ +TG+ 
Sbjct: 61  AKGAIGVIVDHEVSVI-----SSKRITQIIVKDTLIAYQEIANWWRNKLTIPIIGITGSV 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +    G         +      +     T   +      + +       
Sbjct: 116 GKTTTKELIAAVLGVYGKVHKTQANYNNEIGVPK-----TLLSLTTNHDYAVIEMAMRAR 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +   S           +   G  TN+G  HI    +++A   A        +PK+S A
Sbjct: 171 GEIALLSQI--------ARPTIGIITNVGTAHIGRLGSREAIAEA-KCELLAEMPKDSIA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  DD    E   R          +        L               +  +  DF  
Sbjct: 222 ILNHDDQRLMETAARIWQGKTITYGLEGGDITGELLDNQI----------LRVEGIDFPL 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG     N L A  +   + +D   +L     + +  GR +    ++    +   Y  
Sbjct: 272 PLPGRHNALNYLAALAVTKQLNLDWN-LLTQGVTVDLPKGRSQQYSLSNNIVLLDETYNA 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNP 420
              S++  L+ ++     R + V G     G+        +G +A  L  D   +  D+P
Sbjct: 331 GLESMKAALQLLKDTPGKRHLAVLGTMKELGEASAQLHQEVGAMAEKLGIDGLYILVDDP 390

Query: 421 RSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
                      I  G+     +        I    +++   D ++
Sbjct: 391 E-------AQAITQGVKTIETECFPTHEHLIERLTQVIQPGDRIL 428


>gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
 gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
          Length = 457

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 182/481 (37%), Gaps = 49/481 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   G 
Sbjct: 7   KNIAEMVEGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A++   +            N  +++VD+T   L   A     +    ++ VTG++GK++
Sbjct: 66  AAVLWDRSVPNP------PENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +             +G    +     +       P+ +    +   +  +  + + 
Sbjct: 120 TKDMI----------HAVLGTQYRVHKTGGNFNNHIGLPLTVL---AMPENTEIAVLEMG 166

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S+ G            A   TN+G  H+    +++    A+ +L      KE   +IY 
Sbjct: 167 MSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDGVLIYI 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     +++ A++   +    G       L+ V         TI    K F    P+ G
Sbjct: 225 GDE---PLLQNAYSCQTKTYGTGTHN-DYQLQDVSQSEEGTHFTIKGIEKTFF--IPILG 278

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NA+ A       GI      + L  L V   R E + T+S    I   Y  +  S
Sbjct: 279 KHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTS 338

Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA--IVTDDNPRS 422
           ++  ++   ++   G+ ++V G     GD ++      G +     D    + T      
Sbjct: 339 MKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISP--DKIDRVFT----YG 392

Query: 423 EDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476
           +    I    +          + EK + ++A++   E  +K D+++  A +G +   IV 
Sbjct: 393 KLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIVK 449

Query: 477 N 477
           +
Sbjct: 450 D 450


>gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 481

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 181/481 (37%), Gaps = 49/481 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E++      P Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA   G 
Sbjct: 31  KNIAEMVKGTLANP-QYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAGV 89

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A++   +            N  +++VD+T   L   A     +    ++ VTG++GK++
Sbjct: 90  AAVLWDRSVPNP------PENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTT 143

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +             +G    +     +       P+ +    +   +  +  + + 
Sbjct: 144 TKDMI----------HAVLGTQYRVHKTGGNFNNHIGLPLTVL---AMPENTEIAVLEMG 190

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S+ G            A   TN+G  H+    +++    A+ +L      KE   +IY 
Sbjct: 191 MSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDGVLIYI 248

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     +++ A++   +    G       L+ V         TI      F    P+ G
Sbjct: 249 GDE---PLLQNAYSCQTKTYGTGTHN-DYQLQDVSQSEEGTHFTIKGIENTFF--IPILG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NA+ A       GI      + L  L V   R E + T+S    I   Y  +  S
Sbjct: 303 KHNVMNAMAAIAAGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTS 362

Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA--IVTDDNPRS 422
           ++  ++   ++   G+ ++V G     GD ++      G +     D    + T      
Sbjct: 363 MKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISP--DKIDRVFT----YG 416

Query: 423 EDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476
           +    I    +          + EK + ++A++   E  +K D+++  A +G +   IV 
Sbjct: 417 KLGAFIAEGALKHFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIVK 473

Query: 477 N 477
           +
Sbjct: 474 D 474


>gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
          Length = 458

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 164/471 (34%), Gaps = 40/471 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++   + N +     + R  ++  ++SDSR    G +FV IVG + DGH FI
Sbjct: 1   MK--NLTLENIANVCNGIYRGDEKSRWTEVTAITSDSRQAAPGCLFVPIVGERVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  +  GA A +         F        P + V ++ + +   A     +    ++ +
Sbjct: 59  PNVMEAGALATLSQKELPEARF--------PYIQVASSLQAVKDIAKFYLEQLKIPVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + +         G  +               P+ +          
Sbjct: 111 TGSVGKTSTKEVIASVLKEKYHILKTQGNFN----------NELGLPLTVF---RLRDYH 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +  + +  S  G +  RL  I +      TN+G+ H+++   +     AK  +F  L  
Sbjct: 158 EIAVLEMGISDFG-EMSRLADIARPDTCVITNIGQCHLEFLGDRDGVLKAKTEVFRYLKE 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +    D      +++          +         +            I +   +
Sbjct: 217 GGRAIL--NGDDDKLATIRQVQGKEPIFFGMNPAFPVYADQIQSRGLKGMSCRIHLPEAE 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F    P+PG+  VYNAL AA + +  G+    +   +E L  + GRF  +        + 
Sbjct: 275 FAVEIPMPGQHMVYNALAAAAVGMVHGLTPEQIRRGIESLEPISGRF-RMIETDHFLIVD 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415
             Y     S++  L  ++    GR + + G     G++++     +G  A     D+ I 
Sbjct: 334 DCYNANPVSMKASLDVLKD-ALGRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDLLIC 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           T    R               P    I + +  +  R     L   D ++V
Sbjct: 393 TGSLSRYMS-----EAAKAANPNLEVIYEVDSKKLERNLFSYLRDGDTILV 438


>gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 57-2]
          Length = 452

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAESQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400


>gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
 gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
          Length = 452

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELKGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V+    +         + P ++V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVNRPLDI---------DLPQVIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mollicutes bacterium D7]
 gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. D7]
          Length = 450

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 171/472 (36%), Gaps = 44/472 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ +++     +LI+            +I   S DSR  + G +++ I+G + DGH FI
Sbjct: 1   MKVSEIVIATGGKLISGDETM-------EITGFSQDSRQAEVGMMYIPIIGERYDGHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA AI+                   +++VDNT K L   A  L       ++ +
Sbjct: 54  ESAFTNGASAIITDRLIE--------DDKHVVILVDNTLKALQKMAHYLRKHRKVKVVGI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    V  + ++   +    G                  P+ + +        
Sbjct: 106 TGSVGKTSTRDMVYSVVKQQYKTLKTEGN----------YNNNIGLPLTILRLKDEEVMI 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +   +   +  R+        + TN+G  HI    +++    AK+ +   +   
Sbjct: 156 LEM--GMNHLNEMEELSRIA--CPDISAITNVGTAHIGELGSRENILKAKLEIVAGMSDG 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  I   +D     +     +    V            +KV  + +  + TI+  GK +
Sbjct: 212 STLVINGDND----MLSTVRFDNFKVVKVGVDCAAVFKAEKVILMDDHSEFTINYNGKVY 267

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + P+PG   V NALVA  + I + I     ++ + +  +   R + +   +    I  
Sbjct: 268 QVVVPVPGNHFVLNALVAIAIGINLEIPMEKCIQGISQFELTKKRMDVIELKNNITLIDG 327

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVT 416
            Y  + +S++  +  + T  S R I V       G+  +     +GK +A    D+ +  
Sbjct: 328 TYNASEDSMKSSIDVLATY-SRRKIAVLADMLELGEFSEQLHRSVGKYVAEKQIDVLVAV 386

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +        +  + G+       N  E +      L   DV+++  KG
Sbjct: 387 GREAKFMS----DSAALSGMAEIYYCNNNQEVVNYLKNNLQNDDVVLL--KG 432


>gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 471

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/474 (19%), Positives = 171/474 (36%), Gaps = 39/474 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D  ++   L+       +   +  ++DSR ++ G +F+A+ G K DGH +I +A+  GA 
Sbjct: 3   DSAKIAVLLNGRLYGSEKAVFHRCTADSRQVKGGEMFIALAGEKTDGHKYIARALQSGAA 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++       ++    +   + I+ V+++ K L   A+    +    ++ VTG++GK++ 
Sbjct: 63  IVLAEEKRLRREGVPVLPEKSSIIAVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGKTTT 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V  +           G  +T         L  PS   +      +   G      E 
Sbjct: 123 KDMVAAVLGTKFRVHKNAGNLNT-EIGLPMTVLGAPSDTEVMVLEMGMRGLGQIKTLCEI 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S               A   TN+G  H++   +++    A      E LP+E  AI+  +
Sbjct: 182 S------------CPCAAVITNIGATHLELLGSRENIARA-KWEIVESLPEEGIAILNTE 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLP 307
           D  S E     H         G  G+     +          T     + ++     PLP
Sbjct: 229 DKISMEKAASYHGKTLFYGIEGKFGRPDLWAEEIIPSGDTGTTFRARYKKENVLIRLPLP 288

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V +AL A G  +  G++     + LE L +   R E +    +   I   Y     
Sbjct: 289 GKHNVLDALAALGAGLLNGVNLESGSQALEGLQISAMRLEILPGCHQSIIINDVYNANPA 348

Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S++  L  ++     + + V G     G   Q     +G  A  L  + +VT        
Sbjct: 349 SVKASLAVLKERGGAKTVAVLGEMYELGAASQSGHREVGVEAAGLGVLELVT-------- 400

Query: 425 PEKIRAEIIHGI-------PGFIEKGNRIEAI---RTAIEMLNKQDVLVVAGKG 468
             K+  EI  G               +  EA+   +  I++L     +++  KG
Sbjct: 401 VGKLAEEIAAGALQNGFLPSRIHICEDCAEAVTATKKIIDLLGAGTWVLI--KG 452


>gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
 gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
          Length = 468

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 159/453 (35%), Gaps = 32/453 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R ++AG +FVA+ G   DG  F  +A+ +GA A++V         +A   ++  +
Sbjct: 31  ITTDTRKVEAGDLFVALRGENFDGTAFAAEALERGAAAVLVDQKTPASVLAALNAAHGGV 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV ++T +     A     K    ++A+TG++GK++       +    G         + 
Sbjct: 91  LVAEDTLRAYQDIAHAWRMKFNIPVVAITGSNGKTTTKDLTAAVLSGRGKVCRTAANYNN 150

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--LIAGSFT 210
                      TP                 T   VE    G+ Q            G  T
Sbjct: 151 EVGLPLTLLSITPE---------------DTAAVVEIGMRGMGQIAALAPIAEPSIGIVT 195

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H++   + +    AK  L    +P     I+ ADD     +   A +    +   
Sbjct: 196 NVCEVHMELLGSIENIAKAKAELVTA-IPAGGTVILNADDPRVAGMRSSAADGVRVMTYG 254

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 +  + +  + +  +  ++  G+  ++   LPG   V NAL A      +G+   
Sbjct: 255 ISAAADVRAEALQCMADGSRFMVTWGGERHEYAISLPGRHNVSNALAALAAGFVLGMTPQ 314

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E L  L     R+E     +    I   Y  + +S+   L+    +  GR + V G 
Sbjct: 315 EMQEGLTHLTAEKMRYEVHQVGAW-TLINDAYNASPSSMRASLETTAALYPGRRVAVLGD 373

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIEKGN 444
               G   +     +G+   +L    +VT         E  E        G P      +
Sbjct: 374 MLELGTAAEAAHRDVGRRVAELGFAMVVTYGRQAQWTHETAEA------AGCPDCCHAAS 427

Query: 445 RIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
             +A       L   D ++  G +G     I+ 
Sbjct: 428 HADAAAYLRRHLMDGDTVLFKGSRGMRMEQIIA 460


>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
 gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
          Length = 449

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/473 (18%), Positives = 174/473 (36%), Gaps = 46/473 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+++++I     +L++          E  +N  + D+R I++G +++ +VG   DGH +I
Sbjct: 1   MQIKEIIEATNGQLLSG-------DMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA +I+ +      D +        +++V +T + +S  A  L       ++ +
Sbjct: 54  AQAFNLGASSIITAHKVHYPDKN--------VILVKDTLQAMSDMAKYLRMHRQVKVVGI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +      +   +G  +                I L   +  L ++
Sbjct: 106 TGSVGKTSTKDMIYSVVSTKYKTLKTLGNYNNH--------------IGLPLTILRLQNE 151

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  +  G  +H          + TN+G  HI    +++    AKM +   L   
Sbjct: 152 EVMILEMGMNHLGEIEHLTQIALPDVAAITNIGTAHIGELGSREKILQAKMEIVNGLKSD 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  I   +D       +  H           +   +    V          I  +G+ +
Sbjct: 212 GTLVINDDNDMLHTVNAENYHMIRV----GQNEDCDLKAIDVELRLEDSYFDIDYQGQRY 267

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ GE  VYNAL+A  + +++ ID  L +  +E   +   R + +        I  
Sbjct: 268 HVHVPVSGEHFVYNALIAIAIGLSLDIDMNLCIAGVEHFELTKNRMDMIELKDNIKVIDG 327

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVT 416
            Y    +S++  L  +      R I V       G+ +Q     +G  +     D  +  
Sbjct: 328 TYNANLDSMKSSLAVLAQY-PKRKIAVLADMLELGEYEQALHEEVGSYVVEKNIDELLCV 386

Query: 417 DDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E    I  +    G+       +    +    EML  +D +++  KG
Sbjct: 387 -----GEASCYIVEKAQSLGLKNAYHFEDNQALMTYLDEMLEPEDTILI--KG 432


>gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
          Length = 458

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 151/411 (36%), Gaps = 26/411 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + +    +   +  +  V++D+R +  G +FVA+ G   DGH F  QA+ 
Sbjct: 1   MIATTLQTLADAIGATLIG-ADGPVTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQALE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V+   +L         + P L+V +TR  L    + +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVNRRLAL---------DVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I    G   +  G  +               P+ L              +
Sbjct: 111 KTSVKEMSAAILGLCGNVLYTAGNLN----------NDIGVPLTLL---RLEPQHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +   +  +    NL   H++   +      AK  +F  L P+ +  +
Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLSGVARAKGEIFAGLPPQGTAIV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + +             R       G   +   V +       T+       + L P
Sbjct: 218 NVDSNDWESWQHALTEQRVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     V + L  L  VPGR   +    +   +   Y   
Sbjct: 278 LPGRHNIANALAAAALTMSVGASLTQVQQGLAGLQAVPGRLFPIRLGEQQLLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIA 413
             S+    + +  +   R++VV      G   +     +G+ A     D  
Sbjct: 338 VGSMSAAAEVLGNMPGYRVMVVGDMAELGTEAEACHRRVGQAARAAGIDKV 388


>gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 460

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 146/466 (31%), Gaps = 43/466 (9%)

Query: 14  LINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L+ +    PM   +  +  +V +DSR I  G +FVA+ G K DGH F+ QA+  GA A V
Sbjct: 6   LLKRALQVPMALEDGEEFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAV 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVAS 131
           VS      +    + ++   +VV +T       ASR    K    ++A+TG++GK+S   
Sbjct: 66  VS------EVPEGVAAD-RCVVVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKD 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +              +          LT      +A               VE   
Sbjct: 119 CIAAVLGERYRVIKTQANFNN-EIGLPKTLLTIREDTEMA--------------VVEMGM 163

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GL Q R         +                    AK +                 D 
Sbjct: 164 RGLGQIRAMKHIAYPDAAVITNVGDTHLELLGSLENIAKAKSEILEDFTPKNHAFLNGDD 223

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGE 309
               VM+                  +   ++ A   +   T              PL G 
Sbjct: 224 PRVSVME---TGAAVHTYGIDSDADVKAVEISADGLRTVFTYRSRITGATQKVQLPLIGR 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A  +    G+  A +   LE L +   R E +        I   Y  +  S+
Sbjct: 281 HNVMNALAAVAVGEVYGVPDAAIARGLENLKMTGMRQEILHFGPV-TVINDAYNASPASM 339

Query: 370 EMILKN----IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           E  L+     +++   GR I V       G   Q     +G           VT+     
Sbjct: 340 EAALRTLGDVVKSQGKGRAIAVLADMLELGAHSQSGHAQVGTWCSQYG----VTELVCYG 395

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   +               +R EA R    ++   DV+++  KG
Sbjct: 396 PESRFMAEAAQKAGVPVHYAQDRGEAARVLARLVRPDDVVLL--KG 439


>gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
 gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
          Length = 452

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 166/466 (35%), Gaps = 46/466 (9%)

Query: 6   LIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  + P ++ N L         + INE+++D+R+I    IF+A+ G+K DGHLF  +AI
Sbjct: 1   MILSEIPNILSNSLKEISQPLSNKLINEINTDTRNITENDIFLALKGDKFDGHLFAEKAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A++++   S+           P ++V +T       A+    K    I+ +TG+ 
Sbjct: 61  DKGAIALILNHKISVNST-----KKIPQIIVKDTLIAYQEIANWWRNKVKIPIIGITGSV 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    +  +    G          + I        +TT     + +       +   
Sbjct: 116 GKTTTKELISAVLGVYGKVHKTQANYNNEIGVPKTLLAITTSDDYAVIEMAMRARGEIAL 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +   + G+               TN+G  HI    +++A   AK  L  E+      
Sbjct: 176 LSQIACPTIGI--------------ITNVGTAHIGRLGSREAIAEAKCELLAEMPTDSIA 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + + D    +   K            G       L+                 K  DF 
Sbjct: 222 ILNHDDQRLMETAAKVWQGKTITYGLEGGDITGKVLENQIL-----------RVKGMDFP 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG     N L A  +   + +D   +++ +  +++  GR +     +    +   Y 
Sbjct: 271 LPLPGRHNALNYLAALAVTQQLNLDWHPLIQGV-TVNLPQGRSQQYSLENDIILLDETYN 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDN 419
               S++  L+ ++     R + V G     GD        +G+ A  L  D   +  D+
Sbjct: 330 AGLESMKAALQLLKDTPGKRHLAVLGTMKELGDASAQLHQEVGETAETLGIDGLYILVDD 389

Query: 420 PRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
           P           I  G+     +      + I+   E++   D ++
Sbjct: 390 PE-------AQAIAQGVKTVETECFPTHEQLIQRLTEIIKPGDRIL 428


>gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           boydii ATCC 9905]
          Length = 452

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 154/403 (38%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV      G   +     +G+ A
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAA 379


>gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.]
          Length = 493

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 101/477 (21%), Positives = 175/477 (36%), Gaps = 34/477 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK   LI     E+I       +  ++      VS DSR I  G +FVAI GN  DGH F
Sbjct: 1   MK--QLIPWTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALGELFVAIKGNNHDGHAF 58

Query: 60  IPQAIAQGAEAIVVSSAYSLQDF-SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
               + QG + IV++   + +         +   + VDNT K L   A+    +   +++
Sbjct: 59  AEAVVEQGIKGIVINKQKAGELLCDKLKNQDVFCIEVDNTTKALGDLAAYNRTRADVSVV 118

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GK+S       I  R   +    G  +               P+ L K  S   
Sbjct: 119 AITGSNGKTSTKEMANAIVSRKFDTLSTTGNLN----------NEIGLPLTLLKLCSSQK 168

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +  +  G      +  K   G  TN+GR H++  +T +   NAK  L  + +
Sbjct: 169 ---WAVLELGMNHPGEIARLAEICKPDIGIITNIGRGHLEGLKTIEGVMNAKGEL-LDGI 224

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  AI+ ADD     + ++             +   I    V    N     + +   
Sbjct: 225 KPDGTAILNADDERVMCLARKTTRNVIYFGL--SENALIKASSVEVNKNLTSFVLKLPDD 282

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   PG F V NAL AA +   + + +  +   LE    V GR       +    I
Sbjct: 283 SIRVELNAPGRFMVSNALAAASVGYLLNLSAQEIKSGLENFAPVKGRMNITTLQNGVTII 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLA-DIA 413
              Y    +S+E  +K++  +       +        G   +     +G++  +   +  
Sbjct: 343 DDSYNANPDSMEAAIKSLAGLKGKNRGALVAGDMLELGIYSETLHKKIGELCAECGIERL 402

Query: 414 IVTDDNPRSEDPEKIRA-EIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             T      +    I A  II G+    +  G++ + +    E L  +D +++  KG
Sbjct: 403 YAT-----GQFSSDIAAGAIIGGMDISSVFTGSQEDILSDMTEWLRPEDWILI--KG 452


>gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola]
          Length = 292

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 13/262 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L Y  FP + N          ++K + +S DSR + +  +F+AI G K+DG+ FI
Sbjct: 1   MKKNNLKYILFPWIKNT--------PQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+ +   AI+  +    +       +N PIL      + +S  A+R+Y +  +   I+
Sbjct: 53  FEAVKKRVVAILSETKEKKKHGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKII 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-AQDNRLTTPSPIYLAKALSYL 177
            VTGT+GK++V   + Q  +  G     +G          +  + TT S I +   L   
Sbjct: 113 GVTGTNGKTTVTQLINQWSELLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIA 172

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + + +  V++E SSHGL Q+R+  I    G FTNL +DH+DYH+  + Y +AK   F   
Sbjct: 173 AKKKINLVTMEVSSHGLVQNRVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFS-- 230

Query: 238 LPKESPAIIYADDAYSKEVMKR 259
             K    I+ A+D Y+K+ +++
Sbjct: 231 QHKIKKIILNANDKYAKKWLRK 252


>gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
 gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
          Length = 473

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 177/466 (37%), Gaps = 41/466 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  ++   M       + VS DSR +  G IF  I G+  DGH F  QA  +GA  ++V
Sbjct: 10  LVAAINGVVMGSMPETFSGVSIDSRTLAEGDIFFCIKGHHLDGHDFAAQAYERGAGVLIV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +        + + P++VV +  + L   A     +    I+A+TG+ GK++    +
Sbjct: 70  ----AEHRLRDMKKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +Q    +G     +   +               P+ LA+           +   E   + 
Sbjct: 126 KQALAMTGNVHANLASLNNCWGV----------PLTLARMPIE-----SDYGIFEIGMNH 170

Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            D+ R  +  +       T++   H+ + +  +    AK  +FE  L ++  AI+ AD  
Sbjct: 171 RDEIRPLVKLVCPHVALITHICAGHMGFFKNLEEIAKAKAEIFEG-LDEKGIAILNADSD 229

Query: 252 YSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++++A   G + +      +      + +  + ++  + + +  +D +     PG 
Sbjct: 230 FFSYLVQKAKKCGVKNILSFGESKNADYQARDIRLLTDRSSMIVRIRERDREVQIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVD--YAHT 365
             V N+L     C A+G++   VL          GR        ++ G    +D  Y   
Sbjct: 290 HIVQNSLGVIAACDAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNAN 349

Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD 418
             S+   L+          GR I + G   +     ++  R ++  I L  A+   +   
Sbjct: 350 PASMRAALELLATGPVGEEGRRIAILGDMLELGEYSEKLHRDLIKPIRLSGANPVFL--- 406

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  + + +++  G+       N  + +   +  ++  D+L+V
Sbjct: 407 --FGEAMKSLVSDLSAGV-KVHYAENIEKILSLLLAEISSGDLLMV 449


>gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T]
 gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2002017]
 gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2747-71]
 gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-671]
 gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2930-71]
 gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-304]
          Length = 452

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPALVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSMGKQSHAISTA 400


>gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
 gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
          Length = 469

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 163/457 (35%), Gaps = 28/457 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
                 +++D+R I +G +FVA+ G K DG  F  +A+ +GA A++V +  S     A  
Sbjct: 25  NTVFPHITTDTRKISSGDLFVALRGEKFDGADFAAEALERGAAAVIVGTPLSTSAEKALK 84

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           ++   +L  D+  +     A     K    ++A+TG++GK++       +    G     
Sbjct: 85  KAKGTVLKADDGLRAYQAIAHAWRMKFDIPVIAITGSNGKTTTKELTAAVLSGRGKVCRT 144

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK--L 204
                     A++       P+ L                VE    GL Q          
Sbjct: 145 ----------AENYNNEVGLPLTL-----LGIVPEDFAAVVEIGMRGLGQIAALAPVAAP 189

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+   H++   + +    AK  L E  +P     I+ ADD+    +   A +  
Sbjct: 190 TIGIVTNVCEVHMELLGSIENIAKAKAELVEA-IPSGGTVILNADDSRVAAMRSFAADGV 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +         +  + +    +  +  ++   +  ++   LPG   V N L A     A
Sbjct: 249 RILTYAIDADADVRAEALQCAADGSRFMVTYANERHEYAVSLPGRHNVSNTLAALAAGFA 308

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+    +   L  +     R+E     +    I   Y  + +S+   L+    +  GR 
Sbjct: 309 LGLTPQEMQAGLRNIEGTKMRYETESVGAW-MFINDAYNASPSSMHAALETTAALYPGRK 367

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFI 440
           I V G     G   +    ++G+ A +L   A+VT           I       G     
Sbjct: 368 IAVLGDMLELGAAAEEAHRMIGRRAAELGFAAVVT----YGPQARWIHEAAEETGCAACF 423

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                 EA +   ++L+  D ++  G +G     ++ 
Sbjct: 424 HAETHEEAAQLLRKILSDGDTVLFKGSRGMRMEQVIA 460


>gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
 gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
          Length = 458

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 166/481 (34%), Gaps = 52/481 (10%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  +        +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A
Sbjct: 1   MIKRTVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A++ +           +         D+T   L   A+R   +    ++ VTG+
Sbjct: 61  VQKGAAAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGMKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +           G  +               P+ L    S      + 
Sbjct: 115 NGKTTTKDMIAALLSTHYRVQKTEGNLNNH----------IGVPLTLL---SLDEGTEMA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S  G  +      +  A   TN+G  H+    +++    AK+ +   L      
Sbjct: 162 VVEMGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                +   ++ V K            G Q    +   V          I+       F 
Sbjct: 222 VYHGDEPLLTERVPKLPLPRHVVTFGAGEQN-DYYPTDVRIEAGGTSFVINALPGRTLF- 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYNAL A  +    GID   +   L +L V   R E V T      I   Y 
Sbjct: 280 MPVLGKHYVYNALAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYN 339

Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALD-LADIA----- 413
            +  S+   L  ++ ++  R  I V G     GD +      +G++    + D       
Sbjct: 340 ASPTSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGP 399

Query: 414 ----IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV-AGK 467
               I     P  +D                E  +   A+  A+       D++++ A +
Sbjct: 400 LSHHIAAAAAPFFDD------------GRVREFDD-KAALAEAVRSVATSDDIVLLKASR 446

Query: 468 G 468
           G
Sbjct: 447 G 447


>gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
          Length = 463

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 125/390 (32%), Gaps = 31/390 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  E +   S  P    + +I  V  DSR ++ G +F  I G   DGH F+
Sbjct: 1   MKLT---LCELEEQLMGSSDLP-SAADIEIAAVRIDSRLVKKGDVFFCIEGENFDGHNFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A+VVS      +       + P ++V +T + L   A+    K    ++AV
Sbjct: 57  QQAFDAGAVAVVVSQFMPEFE-------DKPTIMVKDTVQALGRVAAYWRMKSHARMIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  +   SG         +            T               +
Sbjct: 110 TGSAGKTTVKEMLAHVLSGSGSVHKNFMNLNNQLGLPLSMLEATGE-------------E 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S            +       N+G  H++   + +    A  +       +
Sbjct: 157 TYWVMELGISLPHDMGELGPIAQPDMAIVHNIGPAHLEGLGSLENV--ADQKSSLFKYIR 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                +   D           +      S     ++             +  I    +  
Sbjct: 215 PEGVALCCKDHELLWEAANKISKPVPFSSQDENAEYYSTLLHTLPDGSGRFLIKAGEETA 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + + P  G     NA         +G++   + E L  + +   RF     ++ G    +
Sbjct: 275 EVILPTCGSHFAENAAAVTCAAHQLGMELTEIAERLATVELPKQRF---HCHTHGKWTLI 331

Query: 361 D--YAHTSNSLEMILKNIRTITSGRIIVVF 388
           D  Y     S+   +   + I   R +V+ 
Sbjct: 332 DDSYNANPLSMNRAIDTAKRIADDRPLVLV 361


>gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
 gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
          Length = 450

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 163/446 (36%), Gaps = 32/446 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + + + V SDSR+I AG +FVA+ G   DG+ F  +A+  GA A++VS A    +   
Sbjct: 17  GADVQFSSVGSDSRNIVAGQLFVALKGANFDGNAFAQEALELGAAAVLVSDASVQAE--- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P +VV +TR  L   A     K    ++AVTG++GK++    +  I       S
Sbjct: 74  ------PRIVVADTRLALGELAKYWRQKFAMPVVAVTGSNGKTTTKEMLSAIL------S 121

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +++ +   +       P+ L K      +     V +  +  G   +     + 
Sbjct: 122 VVAGAKASVHATYGNLNNDIGVPLTLLKM---QPAHQYAVVEMGMNHLGEIDYLTHIAQP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N G  HI    +++    AK  +F  L       I    D        ++ N  
Sbjct: 179 DVALINNAGIAHIGELGSRENIAKAKGEIFAGLKSDGVAVINADSDYAYYW---KSLNPH 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            ++++ G +       +         V ++    +      + GE  + NAL A     A
Sbjct: 236 RKIVTFGLKNPADVSARYQENDGYASVVLATASDEVSVQLNVQGEHNISNALAAGATAYA 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+    +   L     V GR E     +    I   Y    +S++  +  +  + +G+ 
Sbjct: 296 LGVSLNDIGRGLASFTGVYGRLERKAGINGAVVIDDTYNANPDSMKAAINVLAKL-AGKK 354

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           I+V G  G+     + +  ++    A  A +T          +       G   F     
Sbjct: 355 ILVLGDMGELGADAKSMHAEVGA-YAKAAGLTTLYCLGNLSVETARSFGAGAEHFSSP-- 411

Query: 445 RIEAIRTAI--EMLNKQDVLVVAGKG 468
             EAI  A+   +      ++V  KG
Sbjct: 412 --EAIAQAVLPALAQ-GTTVLV--KG 432


>gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 462

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/466 (16%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL+++I     EL+       +   + + N VS+D+R I+ G IF+A+ G   +G+ F+ 
Sbjct: 5   KLEEIIKAVNGELV-------ITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVE 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA   +VS     +           I+ V+N  K L   A     K    ++A+T
Sbjct: 58  MAIEKGAALCIVSEINFSEGKVGKASY---IIKVENANKALLDLAKYYRSKLDIKVVAIT 114

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +           G  +                           S  
Sbjct: 115 GSTGKTSTKDLVGAVLAEKYKVFKTEGNFNN-------------EIGLPLMIFKLDKSYD 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  +      +  +  K      TN+G  HI+   +++    AK+ + +     +
Sbjct: 162 IAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDF--FCK 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I   D       +       ++ +            + A   +  +    +     
Sbjct: 220 DSILIINGDDDLLSNFESDKFKVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKC 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG+  V N+L A      + I+   +   ++ L     R + V            
Sbjct: 280 FGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDC- 338

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S++  +  ++ I   R I + G     G         + + A +     +    
Sbjct: 339 YNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLF-SI 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              SE   +   EI      +    N  EA +    ++   D++++
Sbjct: 398 GEFSEAYREGFEEINK--ENYKSFLNNEEAAKYIKNIIKDGDIILI 441


>gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
 gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
          Length = 473

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 176/475 (37%), Gaps = 36/475 (7%)

Query: 6   LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I+K    + +    ++   Q     I  V +DSR IQ G +FV IVG K DGH F+   
Sbjct: 1   MIHKSLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A GA A      +        + ++ P++ V++T K L   A+    +    ++ +TG+
Sbjct: 61  LAGGAGAAFWQRDH------QPVPADLPLIFVEDTLKALQSLAAAYLSESRAKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V   V  + + +       G          +N +  P  +     L+      + 
Sbjct: 115 NGKTTVKDMVSALLETTYNVHKTQGN--------YNNHIGLPLTV-----LAMKEDTDII 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S     +   +  +      TN+G  H+    +++    AK+ +   + P    
Sbjct: 162 VLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLL 221

Query: 244 AIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                +    + + +       G R  + G Q            H +  +  S       
Sbjct: 222 IYHGDEPLIRQVLAEEATVKPEGLRTFTFGNQDTNDDYPTGLMFHARGIIFTSSRHAGEG 281

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  PL G   V NAL A  +   +GI    +      L +   R E V T      +   
Sbjct: 282 FSLPLLGRHNVVNALAAMAVATHLGIGDEAIRSGFAHLKLSSMRIEAVETAFGVTVLNDA 341

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVT 416
           Y  +  +++  +  +  +    R I V G     G R++     +G+    D AD+    
Sbjct: 342 YNSSPTAVKAAVDVLGDMKGYRRRIAVLGDMLELGQREESFHAEIGEYLSPDNADLVF-- 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              P S        +     P    +   ++ + I   +E + ++D+++V A +G
Sbjct: 400 TYGPLS---LHTANKAKARFPEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRG 451


>gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae DSM 12163]
          Length = 452

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 86/394 (21%), Positives = 148/394 (37%), Gaps = 32/394 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I QL+   +   +  I +V++D+R   AG +F+A+ G + D H F+  AI  G   ++VS
Sbjct: 9   IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  +   +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  K---------RLPVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +               P+ L              + + A+  G 
Sbjct: 120 AILRECGETLYTAGNLN----------NDIGVPLTLL---RLKPQHRYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++       NL   H++   +      AK  +F   LP    AII  +     
Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINGESNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S G      +   V         T+     D D   PLPG   + N
Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFTLHSPQGDVDVTLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +++G   + V   L  L  VPGR   +  ++    +   Y     S+    +
Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +  +   R+++V         G    MG  A +
Sbjct: 346 VLAGMPGYRVMIV---------GDMAEMGAEAAE 370


>gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella longbeachae NSW150]
 gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella longbeachae NSW150]
          Length = 441

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 91/445 (20%), Positives = 163/445 (36%), Gaps = 39/445 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  +  DSR +++G +F+AI G + DGH FI +A A+GA A VVS             
Sbjct: 18  TELTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSHRVEGVH------ 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P  VV +  + L+  A+         ++A+TG++GK++    +         S    
Sbjct: 72  --IPQFVVPDPIQALAKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAA--ILPSPSHSTK 127

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +              +P+ + +  S           + A+  G   H +  +     
Sbjct: 128 GNLNNH----------IGAPLSVFQLNSQHR---YAVFELGANHPGEIAHTVAIVHPDVT 174

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H++   +      AK  + +  L     AI+  DDAY+    +   +     
Sbjct: 175 LINNIAPAHVEGFGSIDGVARAKGEIHQG-LSSAGTAIVNDDDAYAHFWDELLLDKKVLR 233

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+ +                   ++ V     D    +PG   V NAL AA  C AIG+
Sbjct: 234 FSIEHPADVYAQDVQLDSQGCGHFSLIVPNGRADIHLKVPGLHNVRNALAAAACCHAIGL 293

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  + + L     V GR   +   ++   I   Y     S+ + L+ +     G+ I V
Sbjct: 294 SAKEIQQGLNLFSGVKGRLTVLTGKNQSTVIDDTYNANLRSVLVALEVLAEH-PGKKIFV 352

Query: 388 FGCGGDRDQ---GKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           FG  G+           +G  A  L  D  +      R        A    G+ G     
Sbjct: 353 FGDMGELGVWATQHHQEVGIAARRLGIDQLLCCGSKSR-------LAAEAFGVGG-EYFT 404

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++ + ++  +  L+   V++V  KG
Sbjct: 405 SQEQLVQNLVAKLSADTVVLV--KG 427


>gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 453

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 147/384 (38%), Gaps = 24/384 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I +VS+D+R + +G +FVA+ G K D H +   A+  GA A++VS          
Sbjct: 19  GESIDIEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGAAALLVSK--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P L+V +TR  L    + +  +    ++A+TG+SGK+SV      I ++ G   
Sbjct: 70  HLPIDVPQLLVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEMTAAILRQCGSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L +  +         + + A+  G   +  D ++ 
Sbjct: 130 YTAGNFN----------NDIGVPLTLLRLTAE---HQFAVIELGANHIGEIAYTTDLVRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            +    NL   H++   +      AK  +F  L       +    + +    +   H   
Sbjct: 177 ESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIVNADSNDFPHWQVTLNHKTV 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R               V  +    + T+     +   L PLPG+  + NAL AA L ++
Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAASLAMS 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G     V   L +L  VPGR   +  +     +   Y     S+    + +  +   R+
Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLFPIALSEGKLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356

Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406
           +VV   G  GD        +G+ A
Sbjct: 357 MVVGDMGELGDDAPECHRQVGEAA 380


>gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
 gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
          Length = 453

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 172/466 (36%), Gaps = 38/466 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +  E++       ++     +I  VS+D+R I+ G +F+A+ G   +G+ ++ +A 
Sbjct: 1   MLELNLQEIVKATKGALLKEAYVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA+  +V     ++     ++ +  ++ V NTR+ L   A     K    ++ +TG++
Sbjct: 61  NKGAKIAIVD---EVKCDLNELKEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSA 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    V  +           G          +N +  P  I                
Sbjct: 118 GKTSTKDLVAAVLSDKYKVFKTKGN--------FNNEIGLPLMI-------LELDSTYDV 162

Query: 185 VSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E    GL Q +          G  TN+G  HI+  +T++    AKM +        +
Sbjct: 163 AILEMGMRGLGQIKELAEIASPDFGIITNIGISHIEILKTRENILKAKMEIATFFDKNNT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD     +    +     V +   +   I  K +       + T+    K+ +F
Sbjct: 223 LVVCGNDD----FLGALPNAEYKIVKTGVGENFKIGAKNIALEELSSKFTVYDGEKEEEF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PGE  + N ++   +   +G+    +   L+ +     R E +  +         Y
Sbjct: 279 SLDMPGEHNISNLMLGIAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDGFSILNDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  +++  +  ++ I   R I V G     G + +     +GK + +     ++    
Sbjct: 338 NSSPVAVKSAIDVMKNIEGKRRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVLC--- 394

Query: 420 PRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                       I  G   G     N+ E I+  + ++   D+++V
Sbjct: 395 -----FGDFSKNIKEGYGEGCTVYENKEELIKDLLNIICDGDIILV 435


>gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
 gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
          Length = 454

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 91/408 (22%), Positives = 148/408 (36%), Gaps = 35/408 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L++L       L         Q      + VS+D+R +  G +FVA+ G + DGH FI
Sbjct: 7   MSLRELTSAVQGRL---------QGANVAASGVSTDTRSLVPGSLFVALRGERFDGHAFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA  +GA A ++  A +            P + V + R  L   A+    +    I+AV
Sbjct: 58  AQAREKGASAALLEQAINDP---------LPQIEVADARIALGQLAACWRQRFVRPIVAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  +           G  +               P+ L +  +     
Sbjct: 109 TGSNGKTTVKEMIASVLGWREPVLATRGNLN----------NDIGVPLTLLELDTSHR-- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G  ++     +      TN G  H+D     +    AK  +F+ +   
Sbjct: 157 -FAVIEMGANRPGEIEYLSRLTRPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGM-GS 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E  AI+ ADD         A         +    +      V +  +    T+       
Sbjct: 215 EGVAILNADDPCFSYWRDLAGELPVIGFGLSKSAEVTARHVVASTGSSC-FTLITPAGKA 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG   V NAL A+   IA+G+D   +   L  L  VPGR +          +  
Sbjct: 274 KIQLPLPGRHNVLNALAASAATIALGVDRQHLSASLAALSSVPGRLQIRRGIGGMRLLDD 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            Y     S +  L+ +      R +V+  F   G+       IMGK A
Sbjct: 334 TYNANPASFQAALELLAKFPGERALVLGDFAELGEEAASLHRIMGKQA 381


>gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
 gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 173/474 (36%), Gaps = 42/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L         EL+  ++   +   +   N V  D+R I+   I+ AI G + +G+ F+
Sbjct: 1   MELS------LNELLEAMNGELIVKGKTDFNSVCIDTRKIEKNNIYFAINGERFNGNKFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A ++GA   +V       + +  ++    ++ V++T K L   A+    K    ++ V
Sbjct: 55  IEAFSKGASIAIVDEILFDLNNTDNLQ---TVIKVEDTEKALLNLANYYRKKLGLKVIGV 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +              G  +          L   S I +A         
Sbjct: 112 TGSCGKTSTKDLIAAFLSEKYKVFKTKGNFNNQ-IGLPLMILELDSSIDVA--------- 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S+ G      +  +      TN+G  HI+  +TQ+    AK  +F      
Sbjct: 162 ---VLEMGMSNLGEIDVLANCARPDIAVITNIGLSHIENLKTQENILKAKSEIFNYFDET 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  I   D    + ++K        +         ++   +    +K   T+  + ++ 
Sbjct: 219 NTLIINGED----ENLLKIKDKCFEILKIGYNHEYDVYAFNIILEEDKTTFTVKDKNEES 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  + N+++A  +   + +    + + ++ L     R + +  N        
Sbjct: 275 IFTIPMAGKHNILNSMLAVEVAKKLNVTFDEMKKGIKNLEATSMRLQVIKRNKITIINDC 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y  + +S++  +  + +  +GR I + G     G+        +G  AL   D+ I   
Sbjct: 335 -YNASPDSMKSSMDVLSSYKTGRKIAILGTMNELGEEAVKSHIEVGNYALTKVDLLIAVG 393

Query: 418 DNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           +                G      I    + E I     ++ + DV++V A +G
Sbjct: 394 EYKDY---------FKKGFTGENIITFATKEECIDKLDTIIKENDVVLVKASRG 438


>gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coprococcus catus GD/7]
          Length = 456

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 165/470 (35%), Gaps = 42/470 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+++      ++         +        V  DSR I+ G+IFVA  G + DGH FI
Sbjct: 4   MTLENIAAACGGQIYYMREDLAQETA----KGVVIDSRQIEPGYIFVATKGERVDGHRFI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P   A+GA A++                  P ++V+++   L   A+    +    ++ +
Sbjct: 60  PDVFAKGALAVICEVLPEEDLG--------PCILVEDSFMALKQAAAFYRQQLNIRVVGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S   F+  +           G                  P+ +          
Sbjct: 112 TGSVGKTSTKEFIAAVLVEKYKVHKTAGN----------YNNEVGLPLTIFGIQDD---D 158

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +  + +  ++ G + HRL  + +      TN+G+ H++    +     AK  +F+ + P
Sbjct: 159 QIAVLEMGINTFG-EMHRLSEVARPDICVMTNIGQCHLENLIDRDGILRAKSEIFDFMNP 217

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + +  +    D      +   +        +                   +  I +    
Sbjct: 218 EGTVIV--NGDDDKLATIHDVYGKAPITFGMNKDNAIWADHIENRGLLGSRADIHMGDVL 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PLPGE  +YNA+ AA + +   +    +   +  +  V GR         G ++ 
Sbjct: 276 VHANIPLPGEHMIYNAMAAAAVGVQFDMTKEEITAGISHVEAVAGR---SHLIEAGDKVV 332

Query: 360 VDYAHTSNSL-EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
           +D  + +N +      ++     GR + + G     G+ ++     +G+ A +     I+
Sbjct: 333 IDDCYNANPVSMKAAIDLLATAPGRKVAILGDMFELGENERAMHREVGQYAAEKGIDLIL 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVV 464
                 SE  E        G     E     EA+   ++ +L   D ++V
Sbjct: 393 CVGGLSSEMYEGAAE--KGGEARHFEI---REALEAVLQDLLQPGDTVLV 437


>gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
          Length = 459

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 164/468 (35%), Gaps = 35/468 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+         +    +  ++ +D+R I  G +F+A  G + +G  F+  A+ +GA 
Sbjct: 5   TLDEVREATGAQLYKMEHEEFTDIVTDTRKITPGVLFLAFKGERFNGEDFVRDAVEKGAS 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++VS++      +      T +L+ ++T       A     +    ++A+TG++GK++ 
Sbjct: 65  GVMVSTSCPKAQLAGL---KTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 +    G                         P+ L            T   VE 
Sbjct: 122 KDLTAAVLSARGPVLKTQAN----------YNNEIGLPLTLLGLRKE-----HTAAVVEI 166

Query: 190 SSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              GL Q            G  TN+G  H++   + +    A      E +P     ++ 
Sbjct: 167 GMRGLHQIEAMAPIAAPTVGIVTNVGETHMELLGSIENIAKA-KSEMVEAIPAGGTVVLN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---VCAIHNKQQVTISVEGKDFDFLF 304
           AD+ Y   +  +A      +     +   +  K+        ++ +  I  +G++  F F
Sbjct: 226 ADNPYVAAMRSQAREGVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQTFTF 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   VYNAL A     A+G+  A     L  L     RFE     +    I   Y  
Sbjct: 286 AMVGRHNVYNALAAIAAGFALGLTPAEAASGLRNLKATKMRFEVQDVKTY-HVINDAYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  ++ +  +T GR I V G     G   +     +G    +    A+VT    R
Sbjct: 345 SPMSMKAAIETLSELTKGRKIAVMGDMLELGSVSEEAHREVGHELAEHGFAAVVT----R 400

Query: 422 SEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    I       G+P      +   A     ++L   D ++   KG
Sbjct: 401 GQMGAFIADGAEEGGVPQVFRADSHEAAADYLHKILEPGDTILF--KG 446


>gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
 gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
          Length = 451

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/467 (16%), Positives = 156/467 (33%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ N +      ++ +  IN VS DSR I  G +F+   G   DGH FI QA+
Sbjct: 1   MINVTLEQIKNWIDCEIDEKYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A+         +         PI+ V++T   L   A          ++AVTG++
Sbjct: 61  NDGAGAVFSEKENRYSEEIQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT        +           H
Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDEDTEISILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S+           +      TN+G  H+    +++    AK  +   L       
Sbjct: 172 QIELLSNIA---------QPDIAIITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +        +          H+  V        +      +   +  
Sbjct: 223 YDGDEPLLKPHVTQVKDAKLISIGLNSDNTYTCHMNDVKNEGIHFTI-----NQKEHYHL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G++  ++  ++  + +   R E   +++    I   Y  
Sbjct: 278 PILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  + ++  GR I++       G   Q     +G+   D     + T     
Sbjct: 338 SPTSMKAAIDTL-SVMKGRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYT----F 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++   I       +        + + I+T I  +  +D ++V  KG
Sbjct: 393 GKEASYIHDSGKIFVKEAKHFDQKEQLIQTLISQVKPEDKVLV--KG 437


>gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895]
          Length = 452

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 145/394 (36%), Gaps = 25/394 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  +    +Q  +  I+ V++D+R +  G +FVA+ G + D H F   A   GA A++VS
Sbjct: 9   LAGILHGELQGADLTIDAVTTDTRKVTPGCLFVALKGERFDAHDFADNAKEGGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                         + P L+V +TR      A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLDC---------DLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                                 + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLNND-------------YDYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++   LP    AI+ AD+    
Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPVNGIAIMNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            +    +  + T+     D D L PLPG   + N
Sbjct: 226 NWQGIIGDRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGDIDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +A+G     +   L  L  VPGR   +  N     +   Y     S+   ++
Sbjct: 286 ALAAAALSMAVGATLDAIKTGLANLKAVPGRLFPIQLNDNQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            +  +   R++VV      G   +     +G+ A
Sbjct: 346 VLSEMPGYRVLVVGDMAELGAESEACHVQVGEAA 379


>gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
 gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
          Length = 457

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 166/470 (35%), Gaps = 54/470 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           K + +   +    I+ +        +  I+ +++DSR+I  G IF+A+ GN  DGH F  
Sbjct: 9   KFRKIFSANLNSEIDVID-------DFLIDGITTDSRYINPGEIFLALRGNTFDGHDFAN 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+ +GA A++V         S       P + V +T       A     +    ++A+T
Sbjct: 62  IAVDKGAIALIVDH-----HISVKSTKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAIT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +  +    G+                +N +  P  +          ++ 
Sbjct: 117 GSVGKTTTKELISAVLSNYGIVHKTKEN--------YNNEIGVPKTL-------LELTRQ 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +  +E    GL++  L            TN+G  HI    +++A   AK  L  E+ P
Sbjct: 162 HDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIGRLGSKEAIAQAKCELLAEMPP 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +    + +    +   K            G       L             +      
Sbjct: 222 DATAIFNHDNSLLVQTAKKVWKGETISYGLEGGDITGELLDNQTLRVEGMDFPL------ 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PLPG     N L A  +   + +D  +++     +++  GR      +     + 
Sbjct: 276 -----PLPGRHNALNYLGAIAVAKCLKLDCNVLM-QGISVNLPKGRSRRYQLSGDILLLD 329

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415
             Y     S++  L+ ++ I   R + + G     G++       +G+ A  L  D  +V
Sbjct: 330 ETYNAGLESMKAALELLKEIPGQRHLAILGTMKELGEKSAELHREVGETAKALGIDHLLV 389

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
             D     DPE I   I  G  G + +    + E I+   E++   D L+
Sbjct: 390 LVD-----DPEAIA--IADGALGMVTECLPTQEELIKRLTEIVQPGDRLL 432


>gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Erwinia sp. Ejp617]
          Length = 452

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 147/394 (37%), Gaps = 32/394 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I QL+   +   +  I +V++D+R   AG +F+A+ G + D H F+  AI  G   ++VS
Sbjct: 9   IAQLTGGTLHGSDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDAINAGCSGLLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      +  +   +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  K---------RLPVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +               P+ L              + + A+  G 
Sbjct: 120 AILRECGETLYTAGNLN----------NDIGVPLTLL---RLKPQHRYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D ++       NL   H++   +      AK  +F   LP    AII  +     
Sbjct: 167 IAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINGESHDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S G      +   V          +     D D   PLPG   + N
Sbjct: 226 HWQQALHGKTVWRFSPGQADSDFYASDVIISAQGTHFILHSPQGDVDVTLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +++G   + V   L  L  VPGR   +  ++    +   Y     S+    +
Sbjct: 286 ALAASALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +  +   R+++V         G    MG  A +
Sbjct: 346 VLAGMPGYRVMIV---------GDMAEMGAEAAE 370


>gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC BAA-2158]
          Length = 452

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 150/394 (38%), Gaps = 32/394 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +R I +V++D+R    G +F+A+ G + D H F+  AI  G  A++VS
Sbjct: 9   VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               ++          P +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +             P                   + + A+  G 
Sbjct: 120 AILRECGETLYTTGNFNNDIGVPLTLLRLKPE-------------HRYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    ++  +    NL   H++   +      AK  +F   LP    AII +D     
Sbjct: 167 IAYTSGLVRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINSDSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S        +   V         T+     D D + PLPG   + N
Sbjct: 226 HWQQALHAKTIWRFSPEQADSDFYAANVTISAQGTHFTLHSPQGDVDVILPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +++G   + V + L  L  VPGR   +  ++    +   Y     S+    +
Sbjct: 286 ALAASALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +  +   R+++V         G    MG  A +
Sbjct: 346 VLAGMPGYRVMIV---------GDMAEMGAEAAE 370


>gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
 gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
          Length = 475

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 175/463 (37%), Gaps = 26/463 (5%)

Query: 13  ELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           EL+  +    +Q   +  I  VS+D+R + AG +++ + G   DGH F+  A+ +GA  +
Sbjct: 13  ELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAVKKGAGGV 72

Query: 72  VVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V   ++    + + +++  + ++VD+T K L   A          ++A+TG+SGK++  
Sbjct: 73  LVDVHHAFILETGSKKTDGCLKILVDDTLKALGDLARFWRRAVGRPVIAITGSSGKTTTK 132

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                I +++       G  +               P+ L +         +  V +  +
Sbjct: 133 EMTAAILEQTFSVLKTEGNLN----------NLIGLPLTLLRMHR---GHDLALVELGTN 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           + G  +   +  +   G  TN+G  H++  +T +     K  L+  +            D
Sbjct: 180 ARGEIKRLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVF--NAD 237

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +   ++R+         +  +             + Q  T++   +         G  
Sbjct: 238 DEAMAPLRRSWQGKMLTYGITSRADMTASDIAKWGESGQSFTLNAGSESTVVHLSAFGMH 297

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YNAL AA L  A GI    + + L   H V  RFE     +    +   Y     S+ 
Sbjct: 298 NIYNALAAAALSRAAGIGINEISQGLRNFHPVAARFEVHFLPNGAFLVDDTYNANPASVR 357

Query: 371 MILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDP 425
             LK I+T+  + R +VV       GD+ +     +G + A    D   +     RS   
Sbjct: 358 EALKTIQTLKGNHRSVVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKGSLSRSTAA 417

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I+  +       +   +  E +   +  +   D ++V  KG
Sbjct: 418 GAIKGGMTE--ERILFFEDPEEILDDVLSFVEAGDWILV--KG 456


>gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
 gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
          Length = 452

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 172/473 (36%), Gaps = 43/473 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +   +  ++ V++D+R + AG +FVA+ G + D H F+ QA  
Sbjct: 1   MIRVTLSQLADVLQG-ELHGSDLAVDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS   +          + P +VV +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRKLAC---------SLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            T                    +
Sbjct: 111 KTSVKEMTAAILGQCGKTLYTAGNLNNDIGVPMTLLRLTRE-------------HEFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP++  AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LPQDGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S    G       +         T+       D L P
Sbjct: 217 LNADNNDWLNWQSVIGDRQVWRFSPNAAGSDFTASDIQVTSGGTAFTLRTPQGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     V   L KL  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALAMAVGAGLDAVKAGLAKLQAVPGRLFPISLAQHKLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI-------- 414
             S+    + +  +   R++VV      GD  +     +G+ A     D           
Sbjct: 337 VGSMTAAAQVLSDMPGYRVLVVGDMAELGDESEACHRQVGEAAKAAGIDRVFSVGRLSQL 396

Query: 415 VTDDNPRSE---DPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
           +   +   E   D   + A +   I        + KG+R  A+   +  L + 
Sbjct: 397 IGAASGVGEHFADKAALIARLKTAIEEQQIITILVKGSRSAAMEEVVRALQEN 449


>gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
 gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
          Length = 454

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 77/473 (16%), Positives = 175/473 (36%), Gaps = 39/473 (8%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  +   ++    + E +I+ V++D+R +  G +F+ ++G   +GH F  +A
Sbjct: 1   MIKRTVKQIAQMAGGTLSNQAFGEEQIHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A++ +                P+++VD+T   L   A     +    ++ +TG+
Sbjct: 61  VELGAAAVLWNQK------ETNPPEGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  + Q +       G  +               P+ +    S      + 
Sbjct: 115 NGKTTTKDMIHSVLQTTYQVHKTDGNFNNH----------IGLPLTIL---SMPKGTEIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G  +   +  +  A   TN+G  H+    +++A  +AK  + + L    + 
Sbjct: 162 VLEMGMSAKGEIEFLSNLAEPDAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +       + +++       + +    +     +K        +     VEG    FL
Sbjct: 222 YYL-----GDEPLIRERATQLSQQVKTFGEADDCDIKVTHINQLAEGTEFQVEGYAQGFL 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NAL A  +    G++   + + L +  +   R E   T      I   Y 
Sbjct: 277 IPVLGKHNVKNALAAIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTEKGITVINDAYN 336

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGC---GGDRDQGKRPIMGK-IALDLADIAIVTDD 418
            +  S++  +  +  +      I+V G     G  ++     +G+ I  +  D  +    
Sbjct: 337 ASPTSMKAAIDLVGDMDGFANRILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVM---- 392

Query: 419 NPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                    I        G        ++ E  +   ++    DV++V A +G
Sbjct: 393 -TYGRLGAFIAEGAKKSFGDTRVFSFMDKEELKKKLADVAGPDDVVLVKASRG 444


>gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes LO28]
          Length = 178

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 96/195 (49%), Gaps = 21/195 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL +L        +  + +F  +  E  +I+ ++ DSR ++ G +F+ I G   DGH F
Sbjct: 1   MKLNEL--------MQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKF 52

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
             +A+  GA AI+      +         + P++ V ++++ +++ A   YG   +   +
Sbjct: 53  ASRAVELGAVAIIAEKQVDV---------SIPVIYVRDSKRAMAMLADYFYGSPTQALKL 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSY 176
           + +TGT+GK++V+  V+QI + +G  +  IG     I     + + TTP  + L +    
Sbjct: 104 VGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRD 163

Query: 177 LSSQGVTHVSVEASS 191
           +   GV+   +E SS
Sbjct: 164 MLLSGVSTAVMEVSS 178


>gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 452

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 168/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPRGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   V  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTTIKAGLATLKAVPGRLFPVQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G R +AI  A
Sbjct: 378 -----AAKAAGIDRVLSTGKRSQAISHA 400


>gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 484

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 85/501 (16%), Positives = 161/501 (32%), Gaps = 41/501 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+  +  ++  + +N  +I  +      +N VS DSR++  G +F AI G+  DG  FI
Sbjct: 1   MKMDAISLEEVIQAVNGKAISNVSG--LMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA  +VVS     Q          P+++VD+ +  L   A     K    I+ +
Sbjct: 59  EQAFDAGAIGVVVSK----QGGIDISGKCLPLILVDDVKTALGDLARHYRRKLNAKIIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +              +          LT        K        
Sbjct: 115 TGSNGKTTTKEMLYHLLSHFAPVVKPQKSFNNF----IGVPLTIFEIESKHKYGILEMGT 170

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  S  GL                N+ + H++   + +           + L +
Sbjct: 171 NAPGEILRLSEIGL---------PDIAVILNISKTHLEGLGSIEGVALE-KGDILKNLKE 220

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---- 296
               +  AD+    E+  +                     K     +   + I       
Sbjct: 221 NGVFVYNADNPLCCEIADKFGGNKISFGLGQNAQIRGTDAKKKGNGSVFTIDIDYNTFRL 280

Query: 297 -------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   + F+    +PG   + N L +  +C A+G+D + +        +   R +  
Sbjct: 281 CGVKGGGRRQFEIQLQVPGHHNISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRIDSQ 340

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKI 405
              +    I   Y     S+   LK    I  +GR I + G     G         +G+ 
Sbjct: 341 QIGNV-TFINDAYNANPESVFAALKYFEEIDAAGRKIFICGDMLELGKESHALHKELGEK 399

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           A  L    + T     S D      +    +   +   +  +     +    + DV+++ 
Sbjct: 400 ASTLNLDLLWTVGKYAS-DIAGAAKDGGMDVEKVLSFRSLDDITEYDMGEFRENDVILIK 458

Query: 466 G-KG-HETVHIVTNGEKKMSV 484
           G +G H    I  +  ++   
Sbjct: 459 GSRGMHMETII--DKYREYFS 477


>gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
 gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
          Length = 453

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 150/405 (37%), Gaps = 25/405 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +      I++VS+D+R + AG +FVA+ G K D H +   A+ 
Sbjct: 1   MISVSLRQLADVLGARLVG-ENLTISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDAVN 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS           +  + P LVVD+TR  L + A  +  +    ++A+TG+SG
Sbjct: 60  NGAAALLVSK---------HLPIDVPQLVVDDTRLALGVMAGWVRQQSRARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G   +  G  +            TP                   +
Sbjct: 111 KTSVKEMAASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPE-------------HDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++  A    NL   H++   + +    AK  +F  L  +    I
Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAII 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               +  ++           R    G+ G   +   +          +     D     P
Sbjct: 218 NADSNDEARWQDVLTGKTLWRFSPQGHDGVDFYASDIRVSERGTDAVLHTPMGDIAVTLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL A  L + +G     V   LE+L  VPGR   +        +   Y   
Sbjct: 278 LPGHHNIANALAATALALTVGASLEAVKVGLEQLQAVPGRLFPIALAPGKLLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
             S+    + +  +   R++VV      G   Q     +G+ A  
Sbjct: 338 VGSMTAAAQVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAARK 382


>gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 452

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 148/468 (31%), Gaps = 35/468 (7%)

Query: 6   LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+ + KI  V+ DSR +Q   +F+   G   DGH F+ Q+I
Sbjct: 1   MIEVTLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQSI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A    +   +           P++ V +T   L   A          ++AVTG++
Sbjct: 61  QDGAAAAFYQTGQEIDSSLEEQ----PLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSN 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ + +         G          +N +  P  I                
Sbjct: 117 GKTTTKDMIESVLKTQFKVKKTQGN--------YNNEIGMPLTI-------LELDYDTDI 161

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E    G  +  L                             AK +       K++  
Sbjct: 162 SILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGI 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            IY  D     +++           +    +  +        N+             +  
Sbjct: 222 FIYDGDE---PLLQPHVAQVKHAKLISVGLEQHNTYVCTIDSNQNDGIAFNINNTEHYEL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+   ++  +++ + +   R E   T  +   I   Y  
Sbjct: 279 PILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNA 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNP 420
           +  S++  +  +  +  GR I++       GD  Q     +G+       D         
Sbjct: 339 SPTSMKASIDTLSNM-EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELY-----T 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E+ + I       +       ++   I    + L   D ++V  KG
Sbjct: 393 FGEEAQYIHRSGQPYVSHAQHFESKEAIIEQLKKELVAGDKVLV--KG 438


>gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
 gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 140/387 (36%), Gaps = 29/387 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +EVS+DSR I    +F+A+ G + D H F P  +  GA A++V     +         + 
Sbjct: 31  SEVSTDSRQIGQDCLFIALKGERFDAHDFAPSVVENGAVALLVERELDV---------DC 81

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P ++V NTR  +   A+ +  +    ++ +TG+SGK+SV      I  + G + +  G  
Sbjct: 82  PQVIVANTRLSMGQLAAWVRKQSQAKVVGLTGSSGKTSVKEMTASILSQRGKTLYTAGNL 141

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L +            + + A+      +  + +K  +    
Sbjct: 142 N----------NDIGVPLTLFRLTHE---YDYAVIEMGANHPNEIAYTTNIVKPESALVN 188

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NL   H+    + +    AK  +++ L  + +  +    D+YS     +           
Sbjct: 189 NLFAAHLAGFGSPEGVARAKGEIYQGLPDEGTAIV--NLDSYSPHWQFQPRQTVWYYSLK 246

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  +   +         T+           PLPG   + N L A+ L I++G    
Sbjct: 247 PQDKADFYPSDIEVKQLSTNFTLHTPVGQIAITLPLPGMHNIANVLAASALAISVGATLE 306

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--F 388
            +   L     VPGR   V  +     +   Y     S+   +  +  +   RI++    
Sbjct: 307 DIRNGLATTKAVPGRLYPVQLSPTKVVLDDTYNANDGSMIAAINVLAKMPGYRILIAGDM 366

Query: 389 GCGGDRDQGKRPIMGKIALDLA--DIA 413
           G  GD  Q     +G IA   A  D  
Sbjct: 367 GELGDYAQDCHQRVG-IAAKDAGLDKV 392


>gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
 gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
          Length = 458

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 158/451 (35%), Gaps = 32/451 (7%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VESGAVATLWMKDVANP------PENLPVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +               P+ +    +   +  V 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---NLEENTEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    +++A   AK+ +   L      
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D           N     ++ G      +      +          + ++  F 
Sbjct: 222 VY--NGDEPLLTNRVPEMNLMAETVTFGDARANDYYPTTVTLQATGTHFKMNKDENISFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYN L +  +    G+    + + L  L +   R E V T+S    I   Y 
Sbjct: 280 LPVLGKHNVYNTLASMAIAKHFGVTWEEMKQGLVTLQMTGMRMEIVKTDSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG-NRIEAI 449
                  +I        P    K  +  EA+
Sbjct: 397 -YGRLGAQIAEGAKINFPSERVKAYDNKEAL 426


>gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus epidermidis FRI909]
          Length = 451

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 77/467 (16%), Positives = 155/467 (33%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ N +      +  +  IN VS DSR I  G +F+   G   DGH FI QA+
Sbjct: 1   MINVTLEQIKNWIDCEIDEKHLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A+         +         PI+ V++T   L   A          ++AVTG++
Sbjct: 61  NDGAGAVFSEKENRYSEEIQG-----PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT        +           H
Sbjct: 116 GKTTTKDMIESVLSTEFKVKKTQGN----YNNEIGMPLTLLELDEDTEISILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S+           +      TN+G  H+    +++    AK  +   L       
Sbjct: 172 QIELLSNIA---------QPDIAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +        +          H+  V        +      +   +  
Sbjct: 223 YDGDEPLLKPHVTQVKDAKLISIGLNSDNTYTCHMNDVKNEGIHFTI-----NQKEHYHL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G++  ++  ++  + +   R E   +++    I   Y  
Sbjct: 278 PILGTHNMKNAAIAIAIGHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  + ++  GR I++       G   Q     +G+   D     + T     
Sbjct: 338 SPTSMKAAIDTL-SVMKGRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYT----F 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++   I       +        + + I+T I  +  +D ++V  KG
Sbjct: 393 GKEASYIHDSGKIFVKEAKHFDQKEQLIQTLISQVKPEDKVLV--KG 437


>gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
 gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
          Length = 459

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 170/479 (35%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++           +  +P QW E  +  V  DSR +  G +FV I G + DGH FI
Sbjct: 3   MQLSEIARAL------GVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A + +      D   T  ++ P + V++    L   A     K    ++A+
Sbjct: 56  EQAIQAGAVATLWAK-----DHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++             +++  +     +     +       PI +    +   + 
Sbjct: 111 TGSNGKTTTKD----------MTAAVLATEFNVVKTEANFNNEIGVPITILGMNA---NT 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G      + ++      T +G  HI++ +T+    +AKM + + L   
Sbjct: 158 EVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGLKED 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D     + +RA          G + +        A  + +    +    + 
Sbjct: 218 GCFIY----DGDEPLLAERAKAVDVEQRMFGMKNENDVFASDVAGTDTETSFKTNLDPEV 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   P+ GE+ V NAL A  +     +  A     L   ++   R E++        +  
Sbjct: 274 EVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNRTEWLKGRQGERILSD 333

Query: 361 DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     + + +L +   T  +GR  VV G   +  +    +  ++A  L         N
Sbjct: 334 VYNSNPTAAKAVLNSFAHTKKTGRRFVVLGDMLELGENADQMHAQLADSL---------N 384

Query: 420 PR-SEDPEKIRAEIIH-GIPGFIEKGNRIEAIRT------------AIEMLNKQDVLVV 464
           P   E+   +   +   G     E+    EA+                +M+   D +++
Sbjct: 385 PAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYDANELPQLTTDLQQMIKADDCVLL 443


>gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
 gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
          Length = 452

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 153/403 (37%), Gaps = 26/403 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   ++  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELKGADIALDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL  A L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAGAALAMSVGATRDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             S+   ++ +  +   R++VV      G   +     +G+ A
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAA 379


>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
 gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
          Length = 457

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 94/460 (20%), Positives = 163/460 (35%), Gaps = 47/460 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++ + + VS+D+R I  G +FVA+VG   DGH ++ QA ++GA A VVS + S+   +A 
Sbjct: 20  QDVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQAFSKGAVAAVVSRSDSVSRKAA- 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                   VVD+TR  L+  A     +    + AVTG+SGK++V   +  I  ++     
Sbjct: 79  -------WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKTTVKEMLHAILSQNAEVLA 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +               P+ L    S      +  +   AS+ G   +  D     
Sbjct: 132 TKGNLN----------NDIGVPLTLF---SLKDQHEIAVIEQGASARGEIAYTTDISCPD 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AG 264
                N    H++   + Q    +K  +F  L      AII  DD ++   +        
Sbjct: 179 VAILNNAMGAHLEGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWWLSHTEGLPR 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               + G     +    +    N      +    +  D    + G+  V NAL AA    
Sbjct: 239 LTFSARGDLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQVMGQHNVANALAAASAVS 298

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+    +   L     V GR   + +      I   Y     S+   +  + ++  G 
Sbjct: 299 AQGMSLKDIASGLGSFSAVSGRMRPLKSARGALVIDDSYNANPGSVNAAMDLLVSL-PGE 357

Query: 384 IIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPR------------------ 421
            ++V G     G     +   +G + A    D         R                  
Sbjct: 358 SVLVLGDMAELGADAAEQHEKVGCRAAQKGTDRFWAIGALSRHSVAAYDAAAGKQGQHFK 417

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             E+     A+I       + KG+R  A+   ++ L + +
Sbjct: 418 SHEELIAALADIAEQGVNILIKGSRSAAMDRVVKGLTEGE 457


>gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
 gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC 49946]
 gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
          Length = 452

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 150/394 (38%), Gaps = 32/394 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +R I +V++D+R    G +F+A+ G + D H F+  AI  G  A++VS
Sbjct: 9   VAQLTGGTLHGDDRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADAITAGCSALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               ++          P +VV +TR  L   A+ +  +    I+A+TG+SGK+SV     
Sbjct: 69  KRLPVE---------LPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +             P                   + + A+  G 
Sbjct: 120 AILRECGETLYTTGNFNNDIGVPLTLLRLKPE-------------HRYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    ++  +    NL   H++   +      AK  +F   LP    AII +D     
Sbjct: 167 IAYTSGLVRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPLNGTAIINSDSNDWP 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +  H       S        +   V         T+     D D + PLPG   + N
Sbjct: 226 HWQQALHAKTVWRFSPEQADSDFYAANVTISAQGTHFTLHSPLGDVDVILPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +++G   + V + L  L  VPGR   +  ++    +   Y     S+    +
Sbjct: 286 ALAASALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSADKLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +  +   R+++V         G    MG  A +
Sbjct: 346 VLAGMPGYRVMIV---------GDMAEMGAEAAE 370


>gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 451

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 79/467 (16%), Positives = 162/467 (34%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++   +S      + E +I  V+ DSRH++   +FV   G   DGH F+ QA+
Sbjct: 1   MIEVSLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + D         PI+ VD+T   L   A          ++ VTG++
Sbjct: 61  KSGAGASFYEKGQDISDSIQG-----PIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L       ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFRVKKTQGN--------YNNEIGLPLTI-----LQLDKDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +      +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIELLSKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    + ++K           V       +       ++K      +      +  
Sbjct: 223 Y-----DGDEPLLKPHVENVKNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYEL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+D   + +++  + +   R E   T+++   I   Y  
Sbjct: 278 PILGIHNMKNATIAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  + +  +GR I+V       G+  Q     +G    +     ++T  N  
Sbjct: 338 SPTSMKAAIDTL-SHMNGRKIIVLADSLELGENSQRMHEDVGTYLDNKGIHTLLTYGN-- 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             D + I       +       ++ E       +L   D +++  KG
Sbjct: 395 --DAKFISRTGGQFVEDVAYFSDKNELTHYLKSILQPDDKVLI--KG 437


>gi|313607760|gb|EFR83977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria monocytogenes FSL F2-208]
          Length = 115

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGN 444
            GCGGDRD+GKRP M KIA+D A   I T DNPRSE+P  I  ++I G+P    ++   N
Sbjct: 1   VGCGGDRDKGKRPQMAKIAVDYASNPIFTSDNPRSENPHAIIEDMIQGVPNSDSYVVHEN 60

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           R +AIR A+      DV+++AGKGHE   ++ + E     D    R  +   L
Sbjct: 61  RRDAIRFAVNEAEAGDVILIAGKGHEDYQLIGD-EVIDFDDRVEARIAIEKKL 112


>gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
 gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
          Length = 457

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 150/476 (31%), Gaps = 46/476 (9%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   + +      + +  I  VS +SR ++ G +FV   G   DGH F+  A
Sbjct: 1   MIQRTIAQIAGMIPVLNDHSAFSDISIKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A +                + PILVV++T K +   +     +    +  +TG+
Sbjct: 61  LRKGAAAALWQQDVPNP------PLHLPILVVEDTLKAVQQLSEAYRNELDIKVAGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V     ++           G  +                              V 
Sbjct: 115 NGKTTVKDMTARLLSLRYKVQKTEGNYNNHLGLPLTLLSLEED-------------TEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +      +      TN+G  H+    ++     AK+ + E L      
Sbjct: 162 VLEMGMSGFGEIEFLTKLARPDVVMITNIGESHLQDLGSRAGIAKAKLEIIEGLKDDGMI 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                +      +   +  A  R    G       +  V     ++         D ++ 
Sbjct: 222 IYHGDEPLLKDRLNGYSGPAKVRSFGKGQSN---SIYPVRIDQEEKGSVFQANLSDMEYH 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   V NAL A      +GI    + E    L +   R E          I   Y 
Sbjct: 279 LPVLGVHNVMNALCAMEAAHFLGIPYEQMNEGFASLKLTAMRMELSEGCKGEKVINDAYN 338

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S+   +  +  ++     ++V       GD +      +G+         ++T   
Sbjct: 339 ASPTSMRAAIDLVSELSGYSIKVLVLADMLELGDDEVRFHREIGQAIDPEKIDYVLT--- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLVVAGKG 468
                   +   I  G      +  R+ A       I     + N + +++   KG
Sbjct: 396 -----FGSLGRVIAEGAQEVFSEE-RVFAFSEKGPLIEKLQSLTNAETIVLF--KG 443


>gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 458

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 189/490 (38%), Gaps = 44/490 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++      +   + +      +R+  EVS+D+R ++   +FVA+ G K DGH F+P 
Sbjct: 1   MRKILASTIARVTGGVLL----GEDREFTEVSTDTRTLKPYALFVALHGEKLDGHEFVPD 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A+GA  +VV   +S+         N   +VV +T + L   A     K    ++ +TG
Sbjct: 57  AVAKGAAGVVVERPFSI---------NVTQIVVKDTFRALQELALYNRQKEGLKVIGITG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    V+ + ++           +               P+ L        +  V
Sbjct: 108 SNGKTTTKDLVKAVLRQKYNVCATEKNFN----------NELGVPLTLLNF---DENTEV 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +     G         +   G  TN+G  H++  ++Q+    AK  L +  LP + 
Sbjct: 155 GIVEMGMRGLGEIDALCQVARPDIGIITNIGEAHLELLKSQENIARAKSELIKN-LPGDG 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AII  +      + +   N   +    G++   +++KK     +  +  I+    + +F
Sbjct: 214 VAIINGESP---YIKEIVANIPVKKYFFGHRAGDLYIKKFSQEDDGLRF-ITAGILEEEF 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G     NAL A    + +G+   L+ + L ++ +   R E     S        Y
Sbjct: 270 FLPLFGVHNAVNALAAILTALTLGVRVPLIKKGLSEVELTGMRLEIQFIGSMKIIKDY-Y 328

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             +  S+E  LK +      GR I V G     GD +      +G++A  L    ++T  
Sbjct: 329 NASPTSMEAALKVLAGTGQKGRKIAVLGEMYELGDFETTGHRRVGEVASKLGVDFLITV- 387

Query: 419 NPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHI 474
                   +I    + G            + EA    +  L  +D +++ A +G +   +
Sbjct: 388 ---GPKAREIGNGALAGGMSPQNIFHFATKEEAGSFLLNFLKPEDTVLLKASRGMKFEEL 444

Query: 475 VTNGEKKMSV 484
               E+    
Sbjct: 445 FATIERGWFS 454


>gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 460

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 139/382 (36%), Gaps = 19/382 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     +L   L    +      +  +S+D+R   A  +F A+ G   D H ++ +A+A
Sbjct: 1   MLKLTTKQLATILQAELVGEANVVVENISTDTRQRVASSLFFALKGEHFDAHNYLDKAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV  A          + + P L+V +TR  L   A  +  +     LA+TG+SG
Sbjct: 61  QGANALVVERA--------DTQISVPQLIVKDTRIALGELAKWVKQQVNPRTLAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +      +      ++           P+ L              +
Sbjct: 113 KTTVKEMTASILQSAVGVEQVLFTQGNFNNDI-------GVPLTLL---RLTEQHQFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++       N+   H++   + +    AK  ++   L  +  AI
Sbjct: 163 ELGANHQGEIAYTTGLVQPNVALVNNVAAAHLEGFGSLEGVATAKGEIYRG-LQPDGVAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  +  Y     +       +  +        +   V          +           P
Sbjct: 222 INKEHDYRSTWAQDIGAHRVQYFAYQDNTADFYADNVIFHEAGSTFDLCTPQGKTTIHLP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A+ L + +G   A + + LE    V GR   V        +   Y   
Sbjct: 282 YLGEHNVKNALAASALAMNVGATLAQIKQGLEVRTQVKGRLYPVQPCDNLLLLDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVV 387
            +SL+  ++ ++   + RI+VV
Sbjct: 342 VDSLQSAIRVLQKYDAFRILVV 363


>gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
 gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
          Length = 454

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 157/468 (33%), Gaps = 44/468 (9%)

Query: 3   LQDLIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L  +  K    ++    +     + E+ +  +++DSR I  G IFVA+ G   DG+ F  
Sbjct: 2   LSQISLKQLSNILELPETNLLAIFSEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTE 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A+ +GA AI+V               N P  +V +T       A     +    ++AVT
Sbjct: 62  IAVEKGAIAIIVDREV-----PVIASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +  +  + G                 +N +  P  +     L    S  
Sbjct: 117 GSVGKTTTKELIAAVLSQRGKVHKTRAN--------YNNEIGVPKTL-----LELDKSHD 163

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +   + G      +  +   G  TN+G  HI    + +A   A      E +  +
Sbjct: 164 YAVIEMAMRAKGEIALLTEIARPTLGIITNVGTAHIGRLGSTEAIA-AAKCELLEQMSPD 222

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           + AI+  D+    E   +          +        L            T+ VEG +F 
Sbjct: 223 TIAILNHDNPLLIETAHKVWQGETLTYGLEGGDLVGQLIDAQ--------TLRVEGINFP 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P       Y A +A    + +       L     +++  GR       +    +   
Sbjct: 275 LPIPGRHNALNYLAALAVAKVLNLDWTP---LTEGLTVNLPSGRSRRHQLPNDVLLLDET 331

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTD 417
           Y     S+   L+ ++     R I V G     GD        +G+    L  D  +V  
Sbjct: 332 YNAGLESMIAALELLKQTPGQRHIAVLGTMKELGDHSPQFHRQVGETVKRLNIDHLLVLT 391

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEA-IRTAIEMLNKQDVLV 463
           D+P+         EI  G  G         +A ++   EM+   D ++
Sbjct: 392 DDPQ-------AQEIAVGADGVTTQCWQTHQALVQQLQEMIKPGDRIL 432


>gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 458

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 176/479 (36%), Gaps = 34/479 (7%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      ++ +     VS D+R ++ G ++V I G + DGH F+ +A
Sbjct: 1   MIKRTLKQIEKMVNGTGLAEKYFDMTAQGVSIDTRKMEKGNVYVPIQGERFDGHSFVEKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A +               +N P++ V++T + L + A     +    ++ VTG+
Sbjct: 61  IESGAVATLWKRDVQNP------PANMPVIFVEDTLEALQMLAKNYRDQLNVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    V  +           G  +                              + 
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEED-------------TEIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +      +  A   TN+G  H+    ++ A   AK+      L +   
Sbjct: 162 VLEMGMSSRGEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKL-EIVTGLQEGGV 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   D+      + +   A   +     +    +   V         T++ + ++  F 
Sbjct: 221 FVYNGDEPLLTNRVPKMDLAVETITFGDARANDYYPTSVTLQATGTHFTMNRD-ENVLFY 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYNAL +  +    G+    + + L  L +   R E V TNS    I   Y 
Sbjct: 280 LPVLGKHNVYNALASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEVVKTNSGLTIINDAYN 339

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  ++E     +  +    + IVV G     GD++      +GK+        + T   
Sbjct: 340 ASPTAMEAAFHLMNGLDGFAKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFT--- 396

Query: 420 PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
                  +I        P        N+ E ++   ++++ +DV++V A +G +   I+
Sbjct: 397 -YGRLGAQIAEGAKINFPNERVKAYDNKEELVKNLKDIVDMEDVVLVKASRGMKMEEII 454


>gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 455

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 81/466 (17%), Positives = 154/466 (33%), Gaps = 32/466 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +L   L+     + +  ++ +S D+R IQ G +FV   G   +GH F+ QA  +G
Sbjct: 2   KKTLKQLAAWLNEDMAAFGDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +                  P+L VD+    L   A     +H    + +TG++GK+
Sbjct: 62  AGASLWQKD------EPNPPEGYPLLFVDDPELALQEMARAYRNEHKAKFIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +             IG  +               PI + +         V  + +
Sbjct: 116 STKDILAGTLAPFFKVQKTIGNFNNQ----------LGLPITILQ---LDEDTDVAVLEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +      +      TN+G  H+    ++     AK  + + +          
Sbjct: 163 GMSGFGEIEFLSKLARPHMTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDG 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +    + V K  H         G +   +        +       +    + DF   + 
Sbjct: 223 DEPLLQELVAKEQHLQSVP---FGLESNNLLYADNIHANADGSHFTTHGMMEGDFFISVL 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G  QV N LVA  +   +G+ +  +   LE + +   R + +   +    I   Y     
Sbjct: 280 GRHQVKNTLVAMLISHKLGLSNEQIRTSLEHVVLTDMRMQQILGTNGALFINDAYNAAPT 339

Query: 368 SLEM--ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA-IVTDDNPRS 422
           S++         TI   + +V+      G  ++     + +   +  D    V    PR 
Sbjct: 340 SVKAAIQFMATSTIRPEKWLVLGDMLELGPNERIFHEGLAEHINE--DEIDYVCLFGPRM 397

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               KI  +        +   +   AI   +E  N+  ++++  KG
Sbjct: 398 LYLYKILEKRFE-AERLLYTEDDYTAIIEKLEQANESSIVLL--KG 440


>gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Edwardsiella tarda FL6-60]
          Length = 458

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 150/411 (36%), Gaps = 26/411 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + +    +   +  +  V++D+R +  G +FVA+ G+  DGH F  QA  
Sbjct: 1   MIATTLQTLADAIGATLIG-ADSPVTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQARE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V+   +L         + P L+V +TR  L    + +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVNRRLAL---------DVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I    G   +  G  +               P+ L              +
Sbjct: 111 KTSVKEMSAAILGLCGNVLYTAGNLN----------NDIGVPLTLL---RLEPQHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +   +  +    NL   H++   +      AK  +F  L P+ +  +
Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLSGVAQAKGEIFAGLPPQGTAIV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + +             R       G   +   V +       T+       D L P
Sbjct: 218 NADSNDWENWQHALTEQRVWRFSPQAGAGVDFYASAVRSDAAGTHFTLHTPAGQCDVLLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     V + L  L  VPGR   +        +   Y   
Sbjct: 278 LPGRHNIANALAAAALTMSVGATLTQVQQGLAGLQAVPGRLFPIRLGEHQLLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIA 413
             S+    + +  +   R++VV      G   +     +G+ A     D  
Sbjct: 338 VGSMSAAAEVLGHMPGYRVMVVGDMAELGAEAEACHRRVGQAARAAGIDKV 388


>gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
 gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
          Length = 451

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 163/467 (34%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++   +S      + E +I  V+ DSRH++   +FV   G   DGH F+ QA+
Sbjct: 1   MIEVSLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + D         PI+ VD+T   L   A          ++ VTG++
Sbjct: 61  KDGAGASFYEKGQDISDSIQG-----PIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L       ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFRVKKTQGN--------YNNEIGLPLTI-----LQLDKDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +      +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIELLSKIAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    + ++K           V       +       ++K      +      +  
Sbjct: 223 Y-----DGDEPLLKPHVENVKNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYEL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+D   + +++  + +   R E   T+++   I   Y  
Sbjct: 278 PILGIHNMKNATIAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  + +  +GR I+V       G+  Q     +G    D     ++T  N  
Sbjct: 338 SPTSMKAAIDTL-SHMNGRKIIVLADSLELGENSQRMHEDVGAYLEDKGIHTLLTYGN-- 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             D + I     H +       ++ E       +L   D +++  KG
Sbjct: 395 --DAKFISRTGGHFVEDVAYFSDKNELTHYLKSILQPDDKVLI--KG 437


>gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 453

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 151/429 (35%), Gaps = 31/429 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   +    ++  +  ++ VS+D+R I +G +F+A++G   D H FI QA+ 
Sbjct: 1   MISLTLAEIARAVGG-ELKGEDISVSSVSTDTRTITSGTLFIALIGENFDAHDFIEQAVI 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++VS    +          TP ++V++TR  L    S ++       +A+TG+ G
Sbjct: 60  KGAAALIVSQKLQIT---------TPHILVEDTRIALGKLGSIVHQLCKTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I  + G   F  G  +             P                   +
Sbjct: 111 KTTVKEMLTSILSQKGQVLFTQGNFNNDIGVPLTLLRAKPE-------------DDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +        N+   H++   +      A        L   + A+
Sbjct: 158 ELGANHIGEIDYTTRLVNPDVALVNNVAAAHLEGFGSIDGVMQA-KGEIYNGLKSGAVAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLF 304
           I  D    +       +   + +S+           +      +    ++    +     
Sbjct: 217 INLDSNGGQYWQDVLADKTVKTVSMNDSKADYFATDIQLNERGEASFIMTTPIGECVIQL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G+  V NAL A  L +  G     V   L +L  V  R E +  N +   I   Y  
Sbjct: 277 SLVGQHNVANALSATSLALEFGASLEDVKSGLNQLTKVSARAEVIELNKQIRLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +++  +  +      R +++      G+        +G+ A       ++T      
Sbjct: 337 SVPAMKAAIDLLSNYRGKRWLILGNMAELGEESLALHRQVGQHAAPFRFDYVLT----YG 392

Query: 423 EDPEKIRAE 431
            D + I  E
Sbjct: 393 ADAKVISEE 401


>gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 457

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 180/484 (37%), Gaps = 46/484 (9%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +    +   +   +   Q+ +  I+ V++D+R ++   +F+ + G   +GH F+PQA
Sbjct: 1   MIKRTVKNIAKMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G  A++                N  +++VD+T   L   A     +    ++ VTG+
Sbjct: 61  FEAGVAAVLWDR------SEPNPPENQAVILVDDTLSALQQLAKAYLQELGTRVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +             +G    +     +       P+ +    +      + 
Sbjct: 115 NGKTTTKDMI----------HAVLGTRYRVHKTGGNFNNHIGLPLTVL---AMPEDTEIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G            A   TN+G  H+    +++    A+ +L      KE  
Sbjct: 162 VLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDG 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +IY  D     ++++ ++   +    G Q     L+ V         TI    K F   
Sbjct: 220 VLIYIGDE---PLLQKTYSCQTKTYGAGAQN-DYQLQDVSQSEEGTHFTIKGMEKTFF-- 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I   Y 
Sbjct: 274 IPILGKHNVMNAMAAIAAGAYFGITPEDAAKGLSGLKVTGMRLELIKTDSGISIINDAYN 333

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S++  ++   ++   G+ ++V G     GD ++      G +        + T   
Sbjct: 334 ASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISPEKIDRVFT--- 390

Query: 420 PRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVH 473
              +    I    +          + EK + ++A++   E  +K D+++  A +G +   
Sbjct: 391 -YGKLGAFIAEGALKHFEKERVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEE 446

Query: 474 IVTN 477
           IV +
Sbjct: 447 IVKD 450


>gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii L2-6]
          Length = 457

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 140/455 (30%), Gaps = 30/455 (6%)

Query: 19  SIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
            + P  + + + I  V++DSR +  G IFVA  G + DGH F  +A+ +GA  +V++   
Sbjct: 12  GLAPEGFADSQPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNHPV 71

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                          ++  ++   + +  +   G+    ++ VTG+ GK++         
Sbjct: 72  EGVPAERA-------VISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMTYAAI 124

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G +    G  +                + L + +  +       V     SH  +  
Sbjct: 125 AGFGNTIKTEGNQNNE--------------LGLPRTMFRIGRDTEYAVVEMGMSHAGEIE 170

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL                    +   Q             L + SP ++  DD + ++  
Sbjct: 171 RLAKCARPDVGIITCIGVSHIGNLGSQENICKAKLEICAGLAEGSPLVLNGDDPFLRKAA 230

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              H                 L                    ++   P  G   V NAL 
Sbjct: 231 LPTHVRPVWFSLGDENADVCALDVRQEGDGMAFTLCDKNAGRYEVTIPAMGRHNVANALA 290

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A      +G+    V+  L        R + V   S        Y    +S++  L   +
Sbjct: 291 AYAAATRLGLAPEGVIAGLADFEQTGMRQKIVHAGSMDVIEDC-YNANPDSMKAALAMFK 349

Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                R   + G     G         +G+ A +    A+VT      E     RA    
Sbjct: 350 EYPCKRRFALLGDMLELGGMSAPAHEELGRQAAEAGLTALVTY---GPEAARTARAAKDA 406

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           G+   +   +  +A    +  +   D L+V A +G
Sbjct: 407 GLADVVHAEDYRQAADALLARMAPGDALLVKASRG 441


>gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia
           stali symbiont]
          Length = 453

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 149/396 (37%), Gaps = 24/396 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++ ++S   +   +  I +V++D+R +  G +FVA+VG + D + F   AIA GA+A++
Sbjct: 7   QILAEISGGQLHGSDLTIADVTTDTRKVTLGSLFVALVGERFDAYDFAADAIASGAQALL 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+   ++         + P +VV +TR       + +  +    ++ +TG+SGK+SV   
Sbjct: 67  VNRRLAV---------DVPQVVVADTRIAFGQLGAWVRQQAKARVVGLTGSSGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I ++ G + +  G  +            TP                   + + A+  
Sbjct: 118 TAAILRQCGETLYTAGNLNNDYGVPMTLLRLTP-------------QHAYAVIEMGANHQ 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +  + ++       NL   H++   +      AK  +F  L    +  I    +  
Sbjct: 165 GEIAYTTNLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFGGLPVHGTAIINADSNDL 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                + A     R               +    +    T+     D     PLPG   +
Sbjct: 225 PNWQSQFADKILWRFSPQPMADAEFRASDIVLRADATLFTLHTPRGDIAVELPLPGRHNI 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA L +++      +   L+ L  VPGR   +        +   Y     S+   
Sbjct: 285 ANALAAAALALSVDAPLTAIQSGLKTLQPVPGRLFPIRLAGNQLLLDDSYNANVGSMTAA 344

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            + +  +   R++VV   G  GD  +     +G+ A
Sbjct: 345 AQVLGDMPGFRVMVVGDMGELGDEAEACHRQVGEAA 380


>gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
 gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
          Length = 452

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400


>gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
 gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
          Length = 460

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 176/471 (37%), Gaps = 34/471 (7%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   +L   +  S+F        I  VS D+R IQ G +++ I G + +GH F+ +A
Sbjct: 1   MIKRTLKQLATMIPGSVFHSGNEAAVIEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A + +             ++  +++VD+T   L   A     +    ++ +TG+
Sbjct: 61  IENGAVATLWNKDEENP------PTDISVILVDDTLVALQQLAKSYRHELDIKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V+ +   +       G          +N +  P  I     L    +  + 
Sbjct: 115 NGKTTAKDMVKAVLDTTYRVLKTDGN--------FNNHIGMPLTI-----LRLDETHDIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +  +      TN+G  H+    ++     AK+ +   L P    
Sbjct: 162 VLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQL 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                       +  R  N     ++ G   +        +               + F 
Sbjct: 222 VYNG----DEPLLTSRVVNPVFETMTFGSSEQNDLYPSAISAEELGTTFTVSRETTYSFF 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V+NAL A  +    G+D+  + + L++L +   R E V        I   Y 
Sbjct: 278 IPVLGKHNVHNALSAIAVGHYFGLDNETIAKGLKELKLTNMRMELVKRTDGLTFINDAYN 337

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA-IVTDD 418
            +  S++  +  +  +    + I+V G     GD+++     +G+     A+    V   
Sbjct: 338 ASPTSVKAAITLMHDLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQ--AEKIDYVLTY 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            P S + E+            +    + E ++    +  ++DV++V A +G
Sbjct: 396 GPLSVEIEQGAKNNFAE-DKVMHFEEKDELVKKLTAITTREDVVLVKASRG 445


>gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
 gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
          Length = 452

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 152/400 (38%), Gaps = 29/400 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   E+        +   +  +N+V++D+R + AG +FVA+VG + D H F  +AI  GA
Sbjct: 7   KTLAEITGGT----LHGSDLTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEAIDSGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A++VS           +  + P +VV++TR      ++ +  +    ++A+TG+SGK+S
Sbjct: 63  QALLVSK---------HLPVSVPQVVVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKTS 113

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V      I +  G + +  G  +            T                    + + 
Sbjct: 114 VKEMTAAILRECGETLYTAGNLNNDYGVPMTLLRLTAE-------------HQYAVIELG 160

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A+  G   +  D +K  +    NL   H++   +      A      + LP    AI+  
Sbjct: 161 ANHQGEIAYTTDLVKPESALVNNLAAAHLEGFGSLAGVAKA-KGEIFQGLPANGIAILNE 219

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +            +      S          + +    +     +     + + + PLPG
Sbjct: 220 ESNDWPNWQTTLQDKTVWRFSPQAAACDFSARDIRIAQDGTHFVMKTPRGEAEIVLPLPG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL AA L +++    + V + L+ L  VPGR   V  ++    +   Y     S
Sbjct: 280 RHNIANALAAAALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSAHQLLLDDSYNANVGS 339

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
           +   ++ +  +   R++V       GD  +     +G  A
Sbjct: 340 MTAAVQVLSEMPGYRVLVAGDMAELGDETEKCHREIGDAA 379


>gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 481

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 182/482 (37%), Gaps = 42/482 (8%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           LI +    +   +   +   Q+ +  I+ V++D+R ++   +F+ + G + DGH F+ QA
Sbjct: 25  LIKRTVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQA 84

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G  A++   +            N  +++VD+T   L   A     +    ++ VTG+
Sbjct: 85  FEAGVAAVLWDRSVPNP------PENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGS 138

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +             +G    +     +       P+ +    +   +  + 
Sbjct: 139 NGKTTTKDMI----------HAVLGTQYRVHKTGGNFNNHIGLPLTVL---AMPENTEIA 185

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G            A   TN+G  H+    +++    A+ +L      KE  
Sbjct: 186 VLEMGMSAKGEIDLLSRLANPDAAVITNIGESHMQDLGSREGI--AEAKLEIINGLKEDG 243

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +IY  D     +++ A++   +    G       L+ V         TI      F   
Sbjct: 244 VLIYIGDE---PLLQNAYSCQTKTYGTGAHN-DYQLQDVSQSEEGTHFTIKGIENTFF-- 297

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NA+ A       GI      + L  L V   R E + T+S    I   Y 
Sbjct: 298 IPILGKHNVMNAMAAIAAGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIINDAYN 357

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA--IVTD 417
            +  S++  ++   ++   G+ ++V G     GD ++      G +     D    + T 
Sbjct: 358 ASPTSMKAAIQLTESLEGYGKKMLVLGDMLELGDLEETFHKECGAVISP--DKIDRVFTY 415

Query: 418 DNPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIV 475
               +   E    +     +  + EK + ++A++   E  +K D+++  A +G +   IV
Sbjct: 416 GKLGAFIAEGALKQFEKDRVSHYTEKKDLLQAVK---ENASKGDLILFKASRGMKLEEIV 472

Query: 476 TN 477
            +
Sbjct: 473 KD 474


>gi|319944703|ref|ZP_08018967.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741952|gb|EFV94375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 679

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 110/212 (51%), Gaps = 24/212 (11%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-------------- 350
            + G F + NAL AAG   ++G +   ++E L +LH VPGR E VG              
Sbjct: 455 NVLGRFNMENALAAAGAWRSLGWNFPAIVEGLHQLHPVPGRMEIVGLPAAQVSDAGEAAP 514

Query: 351 ----TNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMG 403
               +++    + VDYAHT ++L  +L  +R I     G++  VFG GG+RD+GKRP M 
Sbjct: 515 AAAISSTACPLVVVDYAHTPDALTNVLAALRDIAGQRGGQLCCVFGAGGNRDRGKRPEMA 574

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDV 461
           +    +AD  +VT DNPR EDP +I A++  G+  P +  + +R  AI  AI      DV
Sbjct: 575 RAVEAVADRVVVTSDNPRDEDPAQIIADVCQGLSKPAWRTEADRRVAIDAAIAQAAPADV 634

Query: 462 LVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +++AGKG ET   +  G      D +   + L
Sbjct: 635 VLIAGKGRETTQEIA-GVFHPFSDPEFAAQAL 665



 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 143/480 (29%), Gaps = 103/480 (21%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFI----------------------PQAIAQGAE- 69
           + SDSR +  G  F A+ G ++DG  FI                        A       
Sbjct: 31  LVSDSRRVGKGDAFFALHGRRQDGSTFIAQAVQQGAAAVVVAIPAQACQAEDAAEGDVVQ 90

Query: 70  ---AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTS 124
              A   +  Y     +       P+  V      L   A   Y    +  +++AVTGT+
Sbjct: 91  AEHAACGNFDYFKNLPTLPAGIQVPVCYVPCLGSQLGALADEYYDHPSQVLDVVAVTGTN 150

Query: 125 GKSSVASFVQQICQRSGLSS---------------------------------------- 144
           GK+S   ++ Q        +                                        
Sbjct: 151 GKTSTTHWIAQGVNDRLARTGDAQAVDANTPSRPAASASTQRPAEFAGLVIALDGDADAA 210

Query: 145 --------FQIGPTSTISSFAQDN-RLTTPSPIYLA---KALSYLSSQGVTHVSVEASSH 192
                     IG     +  A +   LTTP P+ L    +     +   V  V++EASS 
Sbjct: 211 MQPGRGRGVVIGTNGVGTPGALEYIGLTTPDPLTLQTLFQRFRADTEAPVGVVAMEASSI 270

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL Q R+ G  +    FTNL RDH+DYH + QAY  AK+ LF     +   A++   D  
Sbjct: 271 GLVQGRMQGTCIHTAVFTNLTRDHLDYHGSMQAYGAAKVGLFSWPTLQA--AVVNLGDPL 328

Query: 253 SKEVMKRAHNAGCRVLSVGYQ--------------------GKFIHLKKVCAIHNKQQVT 292
           + E+++  H        +GY                           +         +  
Sbjct: 329 ATEIIEVLHRHTAAPRIIGYWVNNAHGAPQAGQADAAFQAMDDDARARLRRFYELAMRCD 388

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +E                 + +        +G D          +H    R + +  N
Sbjct: 389 EVLELALDRDSSQHVLMMFPGSVVKTLLQLPEVGADPVASSGGAGSVHGRQQRLQAMFRN 448

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLAD 411
               R+ V       +        R++      +V G        G+  I+G  A  ++D
Sbjct: 449 VATLRLNVLGRFNMENALAAAGAWRSLGWNFPAIVEGLHQLHPVPGRMEIVGLPAAQVSD 508


>gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 461

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 132/368 (35%), Gaps = 27/368 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I  VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+ +          
Sbjct: 33  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRSIDGVH----- 87

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P  VV +    L+  A+    +    I+A+TG++GK++V   +         S   
Sbjct: 88  ---IPQFVVASPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMI--ATILPQPSHAT 142

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G          +N +  P        L+           + A+  G   H +  ++   
Sbjct: 143 KGNL--------NNHIGVPLS-----MLALNKQHRYAVFELGANHPGEIAHTVGIVQPDV 189

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H++   +      A+ +         +   I  DD                
Sbjct: 190 SLINNIAPAHVEGFGSIDGV--ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKI 247

Query: 267 VLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +         I+ + +    H +   T+ +     +    +PG   V NAL AA  C A+
Sbjct: 248 LRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAV 307

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    +   L     V GR   +   ++   I   Y     S+   L+ +     GR I
Sbjct: 308 GISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RPGRKI 366

Query: 386 VVFGCGGD 393
            VFG  G+
Sbjct: 367 FVFGDMGE 374


>gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
 gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
          Length = 458

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 168/456 (36%), Gaps = 29/456 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
             + L        E ++  V SDSR +Q G +F A+ G + DGH FI +  ++G  A+V 
Sbjct: 10  AASMLGELRAGSPETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEVASKGVAAVVA 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                             ++VVDNTR+ L   A+R        I+AV G++GK+S    +
Sbjct: 70  ERTRMTGKMPECG-----VIVVDNTRQALGRLAARYRQDFQLPIIAVGGSNGKTSTKELL 124

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             + ++           +  S  + +N +  P+ +     L    +     + +  +  G
Sbjct: 125 AGVLKKR--------LNTLWSEASFNNDIGVPATL-----LRLEKANQAAVLEIGTNHPG 171

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                +  I+   G  T++GR+H+++        + +  L  ELLP +    +  D  ++
Sbjct: 172 ELAPLVSMIQPKFGIITSIGREHLEFFGDVAGVADEEGWL-AELLPADGKLFLNGDSDWT 230

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           K++ +R      RV         +   K+       QV    +     +   L G  Q  
Sbjct: 231 KQIARRTRATVVRVGFGAGNDWRVTDAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQAL 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NA  A  +   +G+    + + L        R +    N  G  +  D Y   ++S+   
Sbjct: 291 NATFALAVGAELGLTRDHLEQGLSDCKSAKMRLQLS--NWNGICVIDDAYNANADSMLAA 348

Query: 373 LKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  ++ +   GR + V G     G   +     +G+   +L    +           +  
Sbjct: 349 LNTLQEMPCVGRRVAVLGDMAELGAHSEAAHEEVGRRVAELGLNRLFAVGKMAGAMAKSA 408

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           R     G+    E  +   A       L   DV+++
Sbjct: 409 RD---AGLAEASEFDDVPAAAAAVKNFLKAGDVVLL 441


>gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           zeae Ech1591]
 gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae
           Ech1591]
          Length = 453

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 151/405 (37%), Gaps = 25/405 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +  ++  I++VS+D+R + AG +FVA+ G K D H +   A+ 
Sbjct: 1   MIRVSLRQLADVLGARLVG-KDLIISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVN 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    ++          P LVVD+TR  L + A  +  +    ++A+TG+SG
Sbjct: 60  YGAAALLVSKHLPIE---------VPQLVVDDTRLALGVMAGWVRQQSQARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G   +  G  +            TP                   +
Sbjct: 111 KTSVKEMTASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPE-------------HDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++  A    NL   H++   + +    AK  +F  L  +    I
Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAII 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               +  ++     A     R       G   +   +          +     D     P
Sbjct: 218 NADSNDEARWQDVLAGKTLWRFSPQECDGVDFYAGDIRISERGTDFVLHSPMGDIAVTLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL A  L +A+G     V   LE+L  V GR   +        +   Y   
Sbjct: 278 LPGRHNIANALAATALALAVGASLEAVKVGLEQLQAVSGRLFPIALAPGKLLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
             S+   +  +  +   R++VV      G   Q     +G+ A  
Sbjct: 338 VGSMTAAVHVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAACK 382


>gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
 gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
          Length = 458

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 162/476 (34%), Gaps = 44/476 (9%)

Query: 6   LIYKDFPELINQLSIFP---MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I +   E+   + +     +Q  E  ++ V  DSR I+ G ++V + G   DGH ++  
Sbjct: 1   MIKRTIREMTGMIHVEDGEQLQHNETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVED 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA A +               +N P+L+V++T K L   +          ++ +TG
Sbjct: 61  AFRRGAAASLWQKDVPNP------PANVPLLIVEDTEKSLQELSKSYRNALRAKVVGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    V  +           G  +               P+ L    S      +
Sbjct: 115 SNGKTTTKDMVASVLSEKFKVQKTEGNFNNHQGV----------PLTLL---SLDEDTEI 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +  S+ G         +      TN+G  HI    +++A  +AK+ + E L     
Sbjct: 162 AVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQNLGSREAIADAKLEITEGLPENGL 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFD 301
              +         + +R  N          +G    L  V         T       D D
Sbjct: 222 LIYMG----DEPLLQERVPNITGIRTKTFGKGHGNDLYPVEWKQETSGSTFRTNASGDID 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P+ GE+ V N+L A       G+    +   L K  +   R E     +    I   
Sbjct: 278 FYLPVLGEYNVINSLAAILAGREFGMPFEEIRAGLGKTRLSAMRMEMADGINGSKIINDA 337

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
           Y  +  S+   ++ +     +GR I+V G     G+++      +G+         + T 
Sbjct: 338 YNASPTSMRAAIRLVEQFEGTGRKILVLGDMLELGEKEAAFHREVGRDLNPEKIDFVFT- 396

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                    K+   I               ++   I      +   D+++V A +G
Sbjct: 397 -------YGKLGRLIAEACDFPDNRVFAFEDKKRLIDMLKGKIGAGDLVLVKASRG 445


>gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
          Length = 460

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 145/410 (35%), Gaps = 30/410 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++              +P  W +  +  V  DSR +  G +FV I+G + DGH FI
Sbjct: 3   MQLSEIARAL------GTDEYPELWNDISVTSVQFDSRKLSPGSLFVPIMGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  GA A +       +D      ++ P ++V N  + L   A     K    ++A+
Sbjct: 56  SQAVTAGAVATLW-----AEDHQERRPADLPSILVKNPLEALQKLAKYYLDKINPKVVAI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++       + +            +               PI +    S   + 
Sbjct: 111 TGSNGKTTTKDMTAAVLEAEYNVVKTKANFN----------NELGVPITILGMSS---NT 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G      + ++      T +G  HI++ +T++   +AKM + + L   
Sbjct: 158 EVLVVEMGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRERIADAKMEITDGLKED 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                          + +RA +        G +             +   +  +   ++ 
Sbjct: 218 GCFVFNG----DEPLLEQRAKDLNVEQYRFGLKADNDVSASDIQGTDTSTMFKTNLDEET 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G++ V NAL A  +     ID     E L    +   R E++        +  
Sbjct: 274 TVTIPVLGDYNVTNALAAIAVGHKYHIDLKKEAEALVDFDLTKNRTEWLTGKKGERILSD 333

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            Y     +   +L +   + + GR +VV G   +  +    +   +A  L
Sbjct: 334 VYNSNPTAARAVLDSFANVNTEGRRLVVLGDMLELGENADQMHASLAEKL 383


>gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 459

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 170/479 (35%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++           +  +P QW E  +  V  DSR +  G +FV I G + DGH FI
Sbjct: 3   MQLSEIARAL------GVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A + +      D   T  ++ P + V++    L   A     K    ++A+
Sbjct: 56  EQAIQAGAVATLWAK-----DHEDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++             +++  +     +     +       PI +    +   + 
Sbjct: 111 TGSNGKTTTKD----------MTAAVLATEFNVVKTEANFNNEIGVPITILGMNA---NT 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G      + ++      T +G  HI++ +T+    +AKM + + L   
Sbjct: 158 EVLVVELGMDRPGQLHFLSELVQPDIAVITMIGEAHIEFFKTRDRIADAKMEITDGLKED 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D     + +RA        + G + +        A  + +         + 
Sbjct: 218 GCFIY----DGDEPLLAERAKAVDVEQRTFGMKNENDVFASDVAGTDTETSFKINLDPEV 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   P+ GE+ V NAL A  +     +  A     L   ++   R E++        +  
Sbjct: 274 EVKLPIIGEYNVKNALAAITVGDRYHVGVADSARALADFNLTKNRTEWLKGRQGERILSD 333

Query: 361 DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     + + +L +   T  +GR  VV G   +  +    +  ++A  L         N
Sbjct: 334 VYNSNPTAAKAVLNSFAHTKKTGRRFVVLGDMLELGENADQMHAQLADSL---------N 384

Query: 420 PR-SEDPEKIRAEIIH-GIPGFIEKGNRIEAIRT------------AIEMLNKQDVLVV 464
           P   E+   +   +   G     E+    EA+                +M+   D +++
Sbjct: 385 PAQFEEVFLVGQHMRALGKRLVDEEIYPAEAVHLYDANELPQLTTDLQQMIKADDCVLL 443


>gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
          Length = 452

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 159/439 (36%), Gaps = 48/439 (10%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + ++    ++  +  ++ V++D+R +  G +FVA+ G + D H F   A   GA A++VS
Sbjct: 9   LAEILRGELKGGDLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADTAKDNGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A         + ++ P LVV +TR      A+ +  + P  I+A+TG+SGK+SV     
Sbjct: 69  RA---------LDTDLPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  R G + +  G  +                                 + + A+  G 
Sbjct: 120 AILSRCGKTLYTAGNLNNDIGVPMTLLRLNND-------------YDYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  +F   L     AI+ AD+    
Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LSANGIAIMNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + ++       D L PLPG   + N
Sbjct: 226 NWQNIIGDRKVWRFSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +A+G     V   L+ L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAAAALSMAVGATPEAVKAGLKDLQAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEII 433
            +  +   R++VV    GD        M ++ A   A    V       E      A   
Sbjct: 346 VLSEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE------AAKT 381

Query: 434 HGIPGFIEKGNRIEAIRTA 452
            GI   +  G   +AI  A
Sbjct: 382 AGIDRVLSTGKLSQAISHA 400


>gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
 gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
          Length = 461

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/468 (16%), Positives = 155/468 (33%), Gaps = 29/468 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      E ++   +   Q  E  ++ V +DSR I  G +F+ +VG + DGH +I  A+ 
Sbjct: 4   ITVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALE 63

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA   + +            R +   + V NT + L   A+    +     + +TG+ G
Sbjct: 64  AGAAGCLTAR------VRTDYREDKFYIQVGNTERALRDLAAWYKDRFQIPFVGITGSVG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  +           G  +               P+ L        +  V  +
Sbjct: 118 KTTAKDMIAAVLSVKYKVLKTEGNFN----------NNIGLPLTLL---RLDHTHQVGVL 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +     G   +  D ++   G  TN+G  HI+   +++  F AK  L   +  +    +
Sbjct: 165 EMGMDKPGEIDYLSDIVRPEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVV 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD     +  +                   +     + +     I+    + D   P
Sbjct: 225 LNADDPMLTTLRGKTPVQAVFCGKAEDADYRAQVTGGDGVSHIH-CHITTPKMERDVKIP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  +Y  L+AA +    G+    + + + +      R   +        +   Y   
Sbjct: 284 ALGEHMIYPTLIAAAVGEHFGLTPDEIEDGIARFVPTRMRMNVIQREGEITILDDSYNAN 343

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S+   +  +    S   + + G     G         +G          +V      S
Sbjct: 344 PQSMRAAISVLADTHSSWKVAILGDMFELGPYAPALHAGVGDYLGKRGIDCLVAVGKL-S 402

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV-AGKG 468
           E   +   E   G+P      +  EA +  + +++     ++V A +G
Sbjct: 403 EHMAQGARE--AGVPMVYSCAD-KEAAKVVLPQVVRPDSTILVKASRG 447


>gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 459

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 180/466 (38%), Gaps = 40/466 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++++      LI       +   +   N VS D+R ++ G I++AI G   DG+ F+ +
Sbjct: 6   LEEVLKATEGNLI-------INGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVE 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI +GAE  ++      +   A + + + I++V+NT+K L   A     K    ++ VTG
Sbjct: 59  AINKGAELCIIDKIAYTE---AEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    +              G          +N +  P         +  ++  V
Sbjct: 116 STGKTSTKDLIAAALSEKLKVFKTKGN--------FNNEIGLP-----LMIFNLDNTYDV 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S     Q   D  +   G  TN+G  HI+  +T++    AKM +      +  
Sbjct: 163 AVLEMGMSDLFEIQRLSDVARPDLGVITNIGISHIENLKTRENILKAKMEITTYFGKENL 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + +  D      + +A     +      +   +  + +    +  +  ++    +  F
Sbjct: 223 LIVNH--DDQYLSTIDKAEYRLIKASISDDKNIDLKGESLVLKEDSCEFKLN----ESKF 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  + NAL+A      +G++  L+ +    +     R +              Y
Sbjct: 277 YIPMPGKHNISNALLAIACARELGVEDQLINKGFLNIEATSMRLDIEKNKGITIINDT-Y 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDD 418
             + +S++  ++ ++ +   R I V G     G+        MG  A + + DI I    
Sbjct: 336 NASPDSMKAAIEVMKNLKGKRRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIG- 394

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  K  +E  +     IE   +  AI      + ++D+++V
Sbjct: 395 -----EFAKAYSEGFNNKNSSIELAEKEGAIAYLTSEIREEDIILV 435


>gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
 gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
          Length = 472

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 169/472 (35%), Gaps = 33/472 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + D+I     EL+                 +S DSR +  G +FVAI G + DGH FI +
Sbjct: 1   MSDVIAATGGELVQGKG-------NEMFENISIDSRTLGKGDLFVAIQGQQHDGHDFIDR 53

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +AQGA  +++  A++ +  +         +VV +T   L   A          + A+TG
Sbjct: 54  VLAQGAGGVMIDQAHASRINTPRATGRGARVVVKDTVVALGDLARHRRRSVNPRVAAITG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GK+S       +    G     +  T   ++           P+ L           V
Sbjct: 114 TNGKTSTKEMAAMV---CGRRYRVLATTGNFNNEI-------GLPLTLL---RLEKGHQV 160

Query: 183 THVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + +  ++ G +  RL  I     G   N+G  H++  +       AK  L  E L  +
Sbjct: 161 AILEMGMNAPG-EIGRLAKICEPDMGVVLNVGAGHLEGVENIDGVARAKAEL-LEALTDK 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI+ ADD    ++ ++                     +         + +S   +   
Sbjct: 219 DTAIVNADDMRVMKMAQKVRGRVVTYGMRQKADITAASVRRQDGRVCFDLCLSATDEQVA 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  G F V NAL AA +   +G+ +  +   LE    VPGR     T +    +   
Sbjct: 279 VALPASGTFMVSNALAAAAIGAGLGLSAPEIKAGLENFSPVPGRMTITQTRAGFTLVDDT 338

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVT 416
           Y     S++  L  +R +  +GR I++ G     GD         G   A    D   VT
Sbjct: 339 YNANPESMKAALAGLRELKGAGRGILIMGDMFELGDHAPVMHGKTGVMAAESGVDRLYVT 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   +       A +    P  I   ++   I     +L   D ++V  KG
Sbjct: 399 GEFAEAVAGGAAAAGMT---PEKIMIESKETIIEAVCPVLEPGDWVLV--KG 445


>gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
 gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
          Length = 468

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 172/484 (35%), Gaps = 60/484 (12%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+I       +    + ++ VS+DSR + AG +FVA+ G++ DGH FI  A+A+G   
Sbjct: 4   IDEIIQATGGTLIGSGGKMVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAKGVRT 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +V++        A    N   + V  T + L   A+    K    ++ +TG++GK++  
Sbjct: 64  FLVAADSLAARAPA---ENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTTK 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I  ++G      G  + +          T                    + +  S
Sbjct: 121 EMLATILGQTGPGLKTSGNLNNLIGLPLMLLRMTG-------------RDRWAVLEMGMS 167

Query: 191 SHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             G +  RL  I +   G  TN    H+    + +A   AK  LF+  L     A+  AD
Sbjct: 168 EPG-EIDRLAEIAEPGVGIITNAFTAHLASMGSVEAVAKAKGELFQR-LKTGGVAVYNAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +   A  +       G +     +K +       + T+ +   +        G+
Sbjct: 226 DPLISRLPTAAGVSRLSFGLRGAEVSSEGIKTLGLEG--VRFTLRLPDGEIPVKMRAFGQ 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             +YNAL AA    AIG+D   +   LE+      RF           I   Y     S+
Sbjct: 284 HNIYNALAAAAAAHAIGLDHQTIRAGLEEFTPYDKRFHVEQVGDI-VLIDDSYNANPASI 342

Query: 370 EMILKNIRTI-TSGRIIVVFGCG---------GDRDQG--------KRPIMGKIALD--- 408
              L  ++ I    R I V G             R+ G        +  +MG+ A     
Sbjct: 343 AAALVTLKDIRQQNRAIAVLGDMLELGSGAPAAHREVGLLAATCVERLYVMGEYAETVAA 402

Query: 409 -------LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIE 454
                   AD   V       E  E +R ++  G    + KG+R        EAIR    
Sbjct: 403 GAVDGGMGADHIYVA--GSHGEIVEDLRRKVTKG-DNILVKGSRGMHMDKVAEAIRNGFS 459

Query: 455 MLNK 458
           + ++
Sbjct: 460 LADE 463


>gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 457

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 167/480 (34%), Gaps = 50/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK          E+   +    +Q     +++ V +D+R ++ G +F A+ G   D + F
Sbjct: 1   MK-----TMSLDEIAGVIGARQVQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + Q  A+ A A+VVS         + + S T +L V ++ K L   A          ++ 
Sbjct: 56  VEQGKAKQAAAVVVSR------VLSAVNSGTAVLQVQDSLKALQALARYNRQLFNIPVIG 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG++GK+S    +          +  +G        + +       P+ L    S    
Sbjct: 110 VTGSNGKTSTKDMI----------ASVLGVRYKTLKTSGNYNNEIGLPLTLLSMDSS--- 156

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V +     G +   L  +    G+      +        +    A      + + 
Sbjct: 157 HQTAVVEMAMRGRG-EIDFLCQLARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIG 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A++  + + ++++      AG  +         I    +    N  + T+      
Sbjct: 216 PQGFALLSGNSSLTRQLA--GLTAGKVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQ 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   P+PG   + N+L A G+ + +G+    +   L ++ +   R E +  N       
Sbjct: 274 EDIFLPIPGRHNIINSLAAVGVGLELGLSLPEIKAGLAEVVLTGMRMEIIKINGITVIND 333

Query: 360 VDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
           V Y    +S +  L  +  +  + R I V G     G R       +G+ A       +V
Sbjct: 334 V-YNANPDSSKAALTTLADLGHNRRKIAVLGSMFELGCRAVEGHREVGRAAFAAGTEYLV 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVVAGKG 468
           T          ++  +I  G        +R         A     E+  K+DV++V  KG
Sbjct: 393 T--------VGELARQIAVGAKNAGMPADRIFVYEDKQRACDCLGELCKKEDVILV--KG 442


>gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
 gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
          Length = 442

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 140/367 (38%), Gaps = 25/367 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             +I  V +DSR ++ G +F+AI G + DGH FI +A AQGA A VV          A  
Sbjct: 17  NAEITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVV--------KYAVD 68

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P  VV +    L+  A+         ++A+TG++GK++    +  I     L    
Sbjct: 69  GITIPQFVVPDPLHALAKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAI-----LPVPS 123

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +++          +P+ + +  S           + A+  G   H +  +    
Sbjct: 124 HATKGNLNNHI-------GAPLSVLQLTSQHR---YAVFELGANHPGEISHTVAIVHPDV 173

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+   HI+   +      AK  + +  L     A++  DDAY+        +    
Sbjct: 174 TLITNIAPAHIEGFGSIDGVARAKGEIHQG-LSTSGIAVVNDDDAYAHFWDDILVDKKTL 232

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             S+ +  +          +   Q ++ +     D    +PG   V NAL AA  C A+G
Sbjct: 233 RFSIEHPAEVYAQDIHLDAYGCAQFSLILPNGRIDTQLQVPGLHNVRNALAAAACCHAVG 292

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    +   L     V GR   +   ++   I   Y     S+ + L+ +     G+ I 
Sbjct: 293 VAIKDIQHGLNNFGGVKGRLMILSGKNQSTVIDDTYNANLRSVLVALEVLAE-RPGKKIF 351

Query: 387 VFGCGGD 393
           VFG  G+
Sbjct: 352 VFGDMGE 358


>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
           ferrireducens T118]
 gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodoferax ferrireducens T118]
          Length = 480

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 149/407 (36%), Gaps = 20/407 (4%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +++      +  I  V +D+R +  G +FVA+ G   D H F+ QA AQGA A V  ++ 
Sbjct: 17  VNVTGTDGADVLIERVHTDTRTLAPGDLFVALRGEHFDAHDFLAQAKAQGAVAAVCQASD 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +    +       P L+V +T+  L+  A++   +    ++AVTG++GK++V   +  I 
Sbjct: 77  AGDVEAKLRAVGLPGLLVPDTKLALAQLATQWRAQFTLPLIAVTGSNGKTTVTQMIAAIL 136

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +     ++     +  +             + L +       +   +   E ++      
Sbjct: 137 RAYKPQAYLSTQGNLNNDIGVPLT-----VLRLRRQHEIAVVELGMNHPGEIATLAAIAQ 191

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               +        N  R+H+++  T +        + +  LP    A+  ADD YS    
Sbjct: 192 PTVAL------VNNAQREHLEFMATVERVAQENGSVIDA-LPAHGVAVFPADDTYSPLWA 244

Query: 258 KR---AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +            + G     +   +        QV +S       +  P+ G   V N
Sbjct: 245 DKAGSRVVMRFGSAADGAGAAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIAGLHNVKN 304

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +L A    +A G+    +   L     V GR           +   +   Y    +S+  
Sbjct: 305 SLAAVACTLAAGVPLKHIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPDSVRA 364

Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  + ++   R++V+   G  GD+        G+ A  L   ++ T
Sbjct: 365 AIDVLASLPGPRLLVLGDMGEVGDQGPQFHAEAGQHARALGVESLFT 411


>gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 298

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/283 (28%), Positives = 127/283 (44%), Gaps = 5/283 (1%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L + L+ + +   ER + E++ DSR   AG +FVAIVG++ DG  +IPQAIAQG  A+
Sbjct: 4   RNLRDLLAPWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAV 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSV 129
           V  +     D S       P++ + N  + LS  A + Y +      ++ VTGT+GK++ 
Sbjct: 64  VAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
              + Q  +  G +S  +G               TT S + +   L  L  QG T  ++E
Sbjct: 124 TQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAME 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SSHGL Q+R+  +   A  FTNL RDH+DYH    +Y  AK  LF     +       A
Sbjct: 184 VSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN--A 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           DD   +  + +   A    +       +       +  +    
Sbjct: 242 DDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDN 284


>gi|315283078|ref|ZP_07871348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria marthii FSL S4-120]
 gi|313613276|gb|EFR87150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria marthii FSL S4-120]
          Length = 123

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 4/112 (3%)

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNR 445
           GCGGDRD+GKRP M KIA+D A   I T DNPRSE+P  I  ++I G+P    ++   NR
Sbjct: 10  GCGGDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENR 69

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
            +AIR AI      DV+++AGKGHE   ++ + E     D    R  +   L
Sbjct: 70  RDAIRFAINEAKTGDVILIAGKGHEDYQLIGD-EVIDFDDRVEARIAIEKKL 120


>gi|213418873|ref|ZP_03351939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 300

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 89/305 (29%), Positives = 138/305 (45%), Gaps = 20/305 (6%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+  +A
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLS 178
           VTGT+GK++    + Q  Q  G +S  +G               TT S + +   L+ L 
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLV 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +QG T  ++E SSHGL QHR+  +K  A  FTNL RDH+DYH     Y  AK  L+    
Sbjct: 174 AQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYS--T 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                AI+ ADD   +  +    +A        ++    G+++  + V        +  +
Sbjct: 232 HHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFA 291

Query: 295 VEGKD 299
               +
Sbjct: 292 SSWGE 296


>gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
 gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
          Length = 450

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 151/408 (37%), Gaps = 31/408 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           + +L+  +F        +   Q    +I EV+ D+R + AG +FVA+ G + DGH F   
Sbjct: 1   MSELLNAEFI-------VSDKQGDNIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAED 53

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                     V++       S  +    P LVV +TR  L  FA+ +  + P  ++A+TG
Sbjct: 54  ---------AVAAGAGALLVSKRLLVGVPQLVVKDTRLALGQFAAWIRQQVPARVVALTG 104

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK+SV      I +  G   +  G  +               P+ L +  +       
Sbjct: 105 SSGKTSVKEMTAAILRECGNVLYTAGNFN----------NDIGVPLTLLRLTAE---YDF 151

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   +  D  +  +    NL   H++   +      AK  +F  L    +
Sbjct: 152 AVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGT 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I    + +        +    R      +    +   V         T+         
Sbjct: 212 AIINADSNDWPHWQETLHNKRVWRFGLQAAEDIDFYATDVQITPQATHFTLHSPFGTVTI 271

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG   + NAL AA L +++G D + V + L +L  VPGR   +   +    +   Y
Sbjct: 272 ELPLPGRHNIANALAAAALAMSVGADLSAVRQGLMQLQAVPGRLFPIQLATGKLLLDDTY 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
                S+    + +  +   R++VV   G  G+        +G+ A  
Sbjct: 332 NANVGSMTAAAQVLAEMPGYRVMVVGDMGELGETAIDCHRQVGEAAKQ 379


>gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Pseudomonas entomophila L48]
 gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Pseudomonas
           entomophila L48]
          Length = 455

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 87/472 (18%), Positives = 140/472 (29%), Gaps = 46/472 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L        +           +     VS DSR + AG +FVA+ G + DGH ++
Sbjct: 5   MTLSQLTTALGARHVG---------ADASFTGVSIDSRSVGAGQLFVALAGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A+GA A +V    +          + P LVV ++R  L    +       + ++A+
Sbjct: 56  ADVKAKGAVAALVEREIA--------DVDLPQLVVADSRLALGQLGALNRAAFDKPVVAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  I +  G      G  +             P               
Sbjct: 108 TGSSGKTTVKEMLAAILRTRGPVHATRGNLNNDLGAPLTLLEIAPE-------------H 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G +     G+        N                        E L +
Sbjct: 155 SAAVIELGASRMG-EIRYTVGLTKPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKD 299
              AI+   D       KRA        ++       H   +          T+      
Sbjct: 214 GGTAILNLADKAFDIWRKRAGTHRILSFALDNPQADFHASDIGRDARGCPSFTLHGPDGS 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G   V NAL AA    A+G+  + +   L  +  V GR       S    I 
Sbjct: 274 VPVQLNLLGIHNVSNALAAAAAAHAVGLSLSGIAAGLNAVQPVKGRTVAQVAPSGVRVID 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVT 416
             Y     S+   +  +    SGR ++V G  G+  Q        +G  A    D     
Sbjct: 334 DSYNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALYAV 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             N        +   +            + E I            +++  KG
Sbjct: 393 GTN--------MAHAVKAFGEKGRHFATQAELIDAVRTEAASDTTILI--KG 434


>gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 466

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 146/408 (35%), Gaps = 26/408 (6%)

Query: 14  LINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +++ +    +   E+ I N V  DSR ++ G++F A  G   DGH F+  A   GA A++
Sbjct: 8   VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVI 67

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS      D          +++V++T   L   A+         ++AVTG+ GK+S    
Sbjct: 68  VSRG----DCLTKAGPGKSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDI 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +    Q    +    G                  P+ L +      +  V  + +     
Sbjct: 124 LALCLQSRFKTLKTSGN----------YNNEIGLPLTLLQ---LDKTHQVAVLEMAMRGQ 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G         +  +   +N+ + H++   + +    AK  +    L     A+I  D   
Sbjct: 171 GELLQLATIAQPSSALISNVEKVHLETLGSLENIARAKAEVMAT-LGAGDFALINGDSPL 229

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +E       A  +      +     +++    +   ++ +   G+      PLP     
Sbjct: 230 LEE--AVRPYAAKKYRFGYSKSCDFRIEETIIKNQGIEIRLICLGQSEKLFLPLPSRRWA 287

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ AA +   +G+    +   L   +    R E +     G  I   Y     S+   
Sbjct: 288 MNAVAAAAMAFLLGVPLEEIKSSLLNFNPGSKRLEIIPLPDGGKIINDTYNANPLSMINA 347

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIV 415
           L+  R +   G+++ V G     GD +Q     +G  A+    D+ I 
Sbjct: 348 LETSRELQEKGKLVAVLGDMLELGDYEQEGHREVGHHAVKNQVDLLIC 395


>gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
 gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
          Length = 452

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 148/468 (31%), Gaps = 35/468 (7%)

Query: 6   LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+ + KI  V+ DSR +Q   +F+   G   DGH F+ Q+I
Sbjct: 1   MIEVTLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQSI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A    +   +           P++ V +T   L   A          ++AVTG++
Sbjct: 61  QDGAAAAFYQTGQEIDSSLEEQ----PLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSN 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ + +         G          +N +  P  I                
Sbjct: 117 GKTTTKDMIESVLKTQFKVKKTQGN--------YNNEIGMPLTI-------LELDYDTDI 161

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E    G  +  L                             AK +       K++  
Sbjct: 162 SILEMGMSGFHEIELLSSIAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGI 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            IY  D     +++           +    +  +        N+             +  
Sbjct: 222 FIYDGDE---PLLQPHVAQVKHAKLISVGLEQNNTYVCTIDSNQNDGIAFNINNTEHYEL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+   ++  +++ + +   R E   T  +   I   Y  
Sbjct: 279 PILGVHNMRNAAIAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNA 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNP 420
           +  S++  +  +  +  GR I++       GD  Q     +G+       D         
Sbjct: 339 SPTSMKASIDTLSNM-EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELY-----T 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E+ + I       +       ++   I    + L   D ++V  KG
Sbjct: 393 FGEEAQYIHRSGQPYVSHAQHFESKEAIIEQLKKELVAGDKVLV--KG 438


>gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
 gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
          Length = 453

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/467 (17%), Positives = 158/467 (33%), Gaps = 33/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++   +      Q+  + I  V+ DSR I+   +F+   G   DGH F+ QA+
Sbjct: 1   MINVTLKQIKAWIDCEIDEQYFHQSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A       SL           PI+ VD+T + L   A          ++AVTG++
Sbjct: 61  KDGAGASFYQKDVSLPKDIEG-----PIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT    +     +S L       
Sbjct: 116 GKTTTKDMIECVLNTEFNVKKTQGN----YNNEIGMPLTILD-LDKNTDISILEMGMSGF 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E  S   +              TN+G  H+    +++    A        L      
Sbjct: 171 HEIELLSTIAE--------PDIAVITNIGESHMQDLGSREGIAQA-KSEITIGLKSNGTF 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I   D+   K  +++   A C  + +      +              TI+ + +   +  
Sbjct: 222 IYDGDEPLLKPHVEQIKEAKCISIGLEQGNSLVCSVNDQVETEGIAFTINHQQE---YEL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+    +  +++++ +   R E   T  +   I   Y  
Sbjct: 279 PILGIHNMKNAAIAIAVGQELGLSYKTIQHNIKRVKLTGMRMERHETEQQVTVINDAYNA 338

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPR 421
           +  S++  +  +  +   +IIV+      GD  Q     +G        D  I       
Sbjct: 339 SPTSMKAAIDTLSNMNGRKIIVLGDVLELGDNSQRMHEEVGTYLQNKHIDQLI-----TF 393

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   I       +       ++ + I     ++   D +++  KG
Sbjct: 394 GSEATFIHNTGKSYVDEAHHFNDKEKLISYMTHIVQPDDNVLI--KG 438


>gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
 gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
          Length = 460

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 177/471 (37%), Gaps = 34/471 (7%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   +L   +  S+F        I  VS D+R IQ G +++ I G + +GH F+ +A
Sbjct: 1   MIKRTLTQLATMIPGSVFHSGNEATVIEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A + +             ++  +++VD+T + L   A     +    ++ +TG+
Sbjct: 61  IENGALATLWNKDEENP------PTDISVILVDDTLEALQQLAKSYRHELDIKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V+ +   +       G          +N +  P  I     L    +  + 
Sbjct: 115 NGKTTAKDMVKAVLDTTYRVLKTDGN--------FNNHIGMPLTI-----LRLDETHDIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  SS G  +   +  +      TN+G  H+    ++     AK+ +   L P    
Sbjct: 162 VLEMGMSSRGEIEFLSNLAEPDVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQL 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                       +  R  N     ++ G   +        +               + F 
Sbjct: 222 VYNG----DEPLLTSRVVNPVFETVTFGSSEQNDLYPSAISAEELGTTFTVSRETTYPFF 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V+NAL A  +    G+D+  + + L++L +   R E V        I   Y 
Sbjct: 278 IPVLGKHNVHNALSAIAVGHYFGLDNETIAKGLKELKLTNMRMELVKRTDGLTFINDAYN 337

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA-IVTDD 418
            +  S++  +  +  +    + I+V G     GD+++     +G+     A+    V   
Sbjct: 338 ASPTSVKAAITLMHDLEGYKQKILVLGDMLELGDQEKEFHKEVGEFIQ--AEKIDYVLTY 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            P S + E+            +    + E ++    +  ++DV++V A +G
Sbjct: 396 GPLSVEIEQGAKNNFAE-DKVMHFEEKDELVKKLTAITTREDVVLVKASRG 445


>gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
 gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
          Length = 474

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/452 (19%), Positives = 152/452 (33%), Gaps = 47/452 (10%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   V  DSR +  G +FVA  G + DGH +   AI  GA A++ +              
Sbjct: 26  VTGSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEGAIRAGAVAVLGTRPVPA--------- 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             P+++VD+ +  L   A  +  + P   ++ +TG+SGK+S    +  +  R G +    
Sbjct: 77  -VPMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSGKTSTKDLIAALTSRLGPTVAPP 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLI 205
           G  +             P                  ++ +E  + G+   R     +   
Sbjct: 136 GSFNNELGHPYTALQAGPD---------------TRYLVLEKGARGVGHIRYLCDVVPPQ 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  HI    +++    AK  L   L       +    D      M     A  
Sbjct: 181 ISVVLNVGVAHIGEFGSRETIALAKGELVAALPADGLAVL--NADDGLVAAMATRTQARV 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +     +  V     +   T+     +      L G  QV N+L AA +   +
Sbjct: 239 IRYGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAPVRLGLTGRHQVSNSLAAAAVAREL 298

Query: 326 GIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383
           G+    L +   E   V   R +          I   Y     S+E+ L+ + +I    R
Sbjct: 299 GMPLTELAIVLGEMGLVSTRRMDVFERIDSVTVIDDSYNANPASMEVALRALASIGQRRR 358

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIP-- 437
            + V G     G  +      +G++A +L  D  +V       E    I           
Sbjct: 359 TVAVLGYMAELGSYEHDGHVEVGRLAAELGVDRLLVV-----GEAAAPIHEGATSVRDWG 413

Query: 438 -GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++  ++ +A+      L   DV++V  KG
Sbjct: 414 GESVQLTDQADAVEVLRGDLRPGDVVLV--KG 443


>gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
 gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
          Length = 453

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 150/405 (37%), Gaps = 25/405 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +   +  I+EVS+D+R +  G +FVA+ G K D H +   A+ 
Sbjct: 1   MISVSLRQLADVLGARLVG-EDLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADAVN 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS           +  + P LVVD+TR  L   A  +  +    ++A+TG+SG
Sbjct: 60  DGAAALLVSK---------HLPIDVPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G   +  G  +               P+ L      +       +
Sbjct: 111 KTSVKEMTAAILRQCGNVLYTAGNFN----------NDIGVPLTLF---RLMPEHDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++  A    NL   H++   + +    AK  +F  L  +    +
Sbjct: 158 ELGANHIGEIAYTTAMVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFSGLPAQGVAIL 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                  ++     A     R       G   +   V          +     D     P
Sbjct: 218 NADSHDEARWHDALAGKTRWRFSPQARAGVDFYASDVGISERGTDFVLHTPAGDIAVTLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     V   L +L  VPGR   +        +   Y   
Sbjct: 278 LPGRHNIANALAAAALSLAVGASLDAVKAGLAQLQAVPGRLFPIALAPGKLLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
             S+    + +  +   R++VV      G   Q     +G+ A  
Sbjct: 338 VGSMTAAAQVLAEMPGYRVMVVGDMAELGQDAQACHRQVGEAARK 382


>gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 454

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 148/459 (32%), Gaps = 30/459 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  L++  +   E  +  V++DSR +  G IFVA  G K DGH F  +A+  GA  +V+
Sbjct: 9   LLEGLAVNALAQCETPVTLVTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVL 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +          +       ++  ++   + +  +    +    ++ VTG+ GK++     
Sbjct: 69  NHPVEGVPEEKS-------VICPDSYHAMMVLGANYRSQFHPKVVGVTGSVGKTTTKQMT 121

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                  G +    G  +                + L + +  +  +    V     SH 
Sbjct: 122 YAAIAGFGSTIKTEGNQNNE--------------LGLPRTMFRIGKETQYAVVEMGMSHA 167

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            +  RL                    +   Q             LP+ +P ++  DD + 
Sbjct: 168 GEIERLSKCARPDVGIITCIGMSHIGNLGSQENICKAKLEICAGLPEGAPLVLNGDDPFL 227

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++ +   H                 L           V    E   F    P  G   V 
Sbjct: 228 RKAVLPDHVRPVWFSLGDENADVCALSIQQDEKGMSFVLEDHEEGTFLVKIPAMGRHNVA 287

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A      +G+++  V+  L        R + V            Y    +S++  L
Sbjct: 288 NALAAYCAATRLGLNARRVIAGLADFEQTGMRQKVVHARGVDVIEDC-YNANPDSMKAAL 346

Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
              R     R   + G     GD  +     +G+ A++     +VT      E  ++I  
Sbjct: 347 AMFREYPCKRRFALLGDMLELGDISRAAHEEVGRQAVENKVDYLVT----YGEQAKRIAV 402

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                    +      +A  T ++ +   D L+V A +G
Sbjct: 403 VAAAKGLPTLHADTYAQAAETLLDKMQPGDALLVKASRG 441


>gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
 gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
          Length = 485

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 176/487 (36%), Gaps = 42/487 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L      D       + + P    E  +   + DSR +Q G ++VA+ G + DG  F 
Sbjct: 1   MRLS---ASDIARFTGGMLVVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFC 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA  ++V  +          RS   I+ V++T    +  A+    +   +++A+
Sbjct: 58  INALDAGAACLLVMRSPDEALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + V+ +  R+G      G         Q+N L  P+ +     L      
Sbjct: 118 TGSSGKTTTKNLVRDVLARAGSVVATQGN--------QNNELGVPATL-----LRAEEDT 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G  +     ++      TN+G  HI+   ++     AK  +   +   
Sbjct: 165 QFVVVEMGMRGRGQIESLCRFVRPDMALVTNVGESHIELLGSRDGIARAKAEIIAGVKAN 224

Query: 241 ESPAIIYADDAYSKEVMKR----------------AHNAGCRVLSVGYQGKFIHLKKVCA 284
              A I A D ++  +                              G +        +  
Sbjct: 225 TGIAFINASDDFASMLPAYGSADERGVEILFFDGSGKEPASYAAQDGIEVPSTFASDIEL 284

Query: 285 IH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 + T+            L G   V+NA  AA +   +G+ ++++++ LEK   + 
Sbjct: 285 DEAGCARFTLHTPTGTASVHLALAGLHNVHNATAAAAVGSQVGLSASVIVDALEKATSLD 344

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKR 399
           GR   V T S    +   Y    +S++  L +   +   GR I V G     GD  +   
Sbjct: 345 GRGRVVRTASGVVVVDDAYNANPDSMKASLGSFAAMHFAGRHIAVLGDMGELGDTAEEAH 404

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLN 457
             +G +   L    I+      S      RA +  G+P    I   +   A+   + ++N
Sbjct: 405 ARIGSLVASLPIDLIICV---GSLACGIARAAVAAGMPEDAAICVTDASAALDQVVSLVN 461

Query: 458 KQDVLVV 464
             D ++V
Sbjct: 462 AGDGILV 468


>gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 452

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 95/468 (20%), Positives = 173/468 (36%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +   + V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTFDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
 gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
          Length = 458

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 141/400 (35%), Gaps = 25/400 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              ++    +  VS D+R I  G +++ I G++ DGH F+ +AI  GA A +        
Sbjct: 18  LAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                   N P++ V++T + L   A     +    ++ VTG++GK+S    V  +    
Sbjct: 78  ------PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATK 131

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  G  +               P+ +    S   +  +  + +  SS G  +    
Sbjct: 132 FKVQKTEGNFNNH----------IGLPLTIL---SLEENTEMAVLEMGMSSRGEIEFLSK 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +  A   TN+G  H+    ++ A   AK+ +   L            D         +
Sbjct: 179 LARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVY--NGDEPLLTNRVPS 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            N     ++ G      +      +          + ++  F  P+ G+  VYN L +  
Sbjct: 237 MNLAAETITFGDARANNYYPTSVTLQATGTYFKMNQDENIVFYLPVLGKHNVYNTLASMA 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +    G+    + + L  L +   R E V T +    I   Y  +  ++E     +  + 
Sbjct: 297 IAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
              + IVV G     GD++      +GK+        + T
Sbjct: 357 GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFT 396


>gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
 gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
          Length = 461

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 141/400 (35%), Gaps = 25/400 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              ++    +  VS D+R I  G +++ I G++ DGH F+ +AI  GA A +        
Sbjct: 21  LAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATLWKKNVQNP 80

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                   N P++ V++T + L   A     +    ++ VTG++GK+S    V  +    
Sbjct: 81  ------PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDIVTSLLATK 134

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  G  +               P+ +    S   +  +  + +  SS G  +    
Sbjct: 135 FKVQKTEGNFNNH----------IGLPLTIL---SLEENTEMAVLEMGMSSRGEIEFLSK 181

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +  A   TN+G  H+    ++ A   AK+ +   L            D         +
Sbjct: 182 LARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVY--NGDEPLLTNRVPS 239

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            N     ++ G      +      +          + ++  F  P+ G+  VYN L +  
Sbjct: 240 MNLAAETITFGDARANNYYPTSVTLQATGTYFKMNQDENIVFYLPVLGKHNVYNTLASMA 299

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +    G+    + + L  L +   R E V T +    I   Y  +  ++E     +  + 
Sbjct: 300 IAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 359

Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
              + IVV G     GD++      +GK+        + T
Sbjct: 360 GFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFT 399


>gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
 gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
          Length = 473

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 168/478 (35%), Gaps = 48/478 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQ+L  +   E+IN              + VS ++R +  G +FVAI G++ DGH F+  
Sbjct: 7   LQNLSRRFGGEVINNSHA-------VNFSSVSINTRTMSVGDLFVAIKGDQFDGHQFVAN 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  QGA A+VV            + S+ P  +V +T   L   A          I+A+TG
Sbjct: 60  AQNQGAIALVVEKEI--------VDSDLPQWLVGDTTLALGHIAEAQRDNFLGKIVAITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   ++ I + +          +  +       L +                  
Sbjct: 112 SSGKTTVKGMLESILRVAVSDHVFATKGNLNNHIGVPLSLLSLKS-----------QHQY 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS+ G  Q+     K       N+   H++   +               L    
Sbjct: 161 AVIEMGASAVGEIQYLTQMAKPDVAMINNVMSAHVEGFGSIDNIAK-GKGEIYNGLTNAG 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGC----------RVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            A+I   D Y+ + +++                  + +               +   +  
Sbjct: 220 VAVINIADKYAPQWLEQNSQRQTLLFSASTDVSNAMDMNSVANITATNVKQKHNGCAKFD 279

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + +  K  +    + G   V NAL A+    A+ I    + + L +   V GR   +   
Sbjct: 280 LQLLEKSTEINLSVLGMHNVANALAASTCAYALNISIEDIAQGLSEFTGVAGRLHCLEGV 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA 410
           +    I   Y    NS    +  +  +++  ++V+      GD    +   +G+ A +  
Sbjct: 340 NDSTVIDDSYNANPNSFCAAIDVLSDMSAKTVLVMGDMAELGDDSDSEHEKIGRYANEKN 399

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++T    +SE+  K+ +          +       I  A++  NK  VL++  KG
Sbjct: 400 IDLLLTLGR-QSEEASKVFSGDKQHFDSVEQL------ITVAVQQANKSTVLLI--KG 448


>gi|289758280|ref|ZP_06517658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
 gi|289713844|gb|EFD77856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
          Length = 417

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 156/374 (41%), Gaps = 9/374 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 21  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 80

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 81  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      + 
Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +   D  +   M         V +      +            QQ T          +
Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317

Query: 304 -FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG + V N LVA  +   +G+     +  L ++  VPGR E +    +G    VDY
Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREI-RVPGRLEQIDRG-QGFLALVDY 375

Query: 363 AHTSNSLEMILKNI 376
           AH   +L  +L  +
Sbjct: 376 AHKPEALRSVLTTL 389


>gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 445

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 137/462 (29%), Gaps = 44/462 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   +L+              +  + +DSR +Q G +FVA+ G + DGH FIPQA+A
Sbjct: 2   LTLRTVADLLQTPLQGDPHLLGLPVQAICTDSRQLQPGSVFVALRGERFDGHNFIPQALA 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++     +            P   V +T       A     + P +++A+TG++G
Sbjct: 62  RGAVAVISQRPVAG-----------PHFQVSDTLAAYQRIARGWREQFPPSVVAITGSAG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +     R G         +     AQ      P                   V
Sbjct: 111 KTTTKEMLAAALSRYGTVLKSEANHNNDIGVAQTLLQMRPE---------------HQFV 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E +  G  + R                      +       A  +        +  A+
Sbjct: 156 VLEMAMRGPGEIRRLAQMAQPTHALITHIGTAHIGRLGSRAAIAAAKCELLQELGQGVAL 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D                      Q     L +            +V  +      P
Sbjct: 216 LNGEDPLLLSTAA---------SLWSGQTLTYGLDQGDLRGEWDPQAQTVTVEGLTLPVP 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N +       ++G+D   + E +     + GR   +            Y  +
Sbjct: 267 LPGRHHALNWMGVLAALRSLGLDWERLREPIALPTPLEGRNRHLKLAGDVEIWDETYNAS 326

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPR 421
             ++   L  +      R   + G     G+        +G+ A  L  D  ++ D  P 
Sbjct: 327 PEAMIAALHLLAQTPGKRRWAILGPMRELGEHAPQLYAEVGRAAAPLGLDRILLLD--PE 384

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            E    +  +         E     E +   +  +   D L+
Sbjct: 385 GEMQPLLDQKPAAQTERCEEVS---ELLEILLHHVQAGDRLL 423


>gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
 gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
          Length = 456

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 156/474 (32%), Gaps = 45/474 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +++D++      L+       ++        +S DSR ++   +FV ++G+K D H FI 
Sbjct: 5   RVKDILSATGGRLLCGSEEMILE-------NISIDSRTMKGNDLFVPLIGDKVDAHRFIG 57

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA   GA A++ S   +       + S  P + V++T+K L    S    +    ++ +T
Sbjct: 58  QAFDNGAAAVLTSRHDA-------MDSARPWIQVEDTKKALQAIGSYYRDRLILPLVGIT 110

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    V              G  ++            P                
Sbjct: 111 GSVGKTTTREMVACALSARYSVYKTPGNHNSQVGVPITISEIAPE-------------DE 157

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +  + +  S  G         K+     TN+G  HI+   TQ   +  K+ + + L    
Sbjct: 158 IGVIELGMSEPGELTVIARIAKIQMAVITNIGVTHIEQLGTQDNIYREKLTIQDGLTEGG 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +    D    +  K            G          V         T +   K   
Sbjct: 218 --ILFLNGDDQFLKSTKAKEGCRTIYYGTGE-NCDYRALNVHLEEGFPAFTAAFGQKQVP 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G   V NA+V+  +    GI      + LE       R +   T   G  +  D
Sbjct: 275 VRLAVMGSHNVLNAMVSLAVAAECGIPMEKAAKCLEAFTGFRNRQQIYQTG--GITVIDD 332

Query: 362 -YAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y  +  S++  L+ + +IT   R I V       GD        +G+   +     +VT
Sbjct: 333 TYNASPVSMKAGLEVLGSITKAKRRIAVLADMKELGDNTLSYHYEIGEYIAEHPVDELVT 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAGKG 468
                 E   +I   +    P    K    +   +    E L + D ++   KG
Sbjct: 393 L----GELAGEIARAVKEHAPCIQVKEFMEQDPLVSYLKEELKEGDCVLF--KG 440


>gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 462

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 150/395 (37%), Gaps = 25/395 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q     +  ++  I  VS+DSR+I A  +F+A+ G + DGH F+  AI  GA A++V
Sbjct: 8   VLAQHLNGTLHGQDGVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTAIKNGAVALLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                         ++   +VV +T+K +    + +        +A+TG++GK+SV   +
Sbjct: 68  DHLLVDH----PFAADIAQIVVVDTQKAMGKMGAFVRQTVAPICVALTGSNGKTSVKEML 123

Query: 134 QQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             I  +     F  G   + I       RL+      + +  +    +     S+     
Sbjct: 124 ATILSQHHQVLFTAGNFNNEIGVPLTLLRLSEGDEYGVFELGANHRGEIDYTSSLVLPQV 183

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L                N+G  H++   + +    A        L  +  AII ADD +
Sbjct: 184 AL--------------VNNVGNAHLEGFGSLEGVAQA-KSEIFNHLTPDGTAIINADDKF 228

Query: 253 SKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +  +++++           +           V   +   + T++ +G+      PL G  
Sbjct: 229 ADFMLQQSQGRKHLRFSREMNVDADVTATDIVADANGCYRFTLTFDGQQEVVQLPLAGLH 288

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           QV NAL AA +CIA+ I    + +    L  V GR +          I   Y     S+ 
Sbjct: 289 QVSNALAAASMCIALDISLYDIAQGFALLKPVKGRMQPHDLGRV-LLIDDSYNANPTSVS 347

Query: 371 MILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMG 403
             +  ++     R +V+   G  GD        +G
Sbjct: 348 AAINWLQQRDGYRCLVLGDLGELGDNAAPLHASIG 382


>gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
 gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 144/408 (35%), Gaps = 25/408 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E +   +    ++    +  VS D+R I  G +++ I G++ DGH F+ +AI  GA A +
Sbjct: 10  EQMVMGAGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENGAVATL 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                           N P++ V++T + L   A     +    ++ VTG++GK+S    
Sbjct: 70  WKKNVQNP------PVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKDI 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           V  +           G  +               P+ +    S   +  +  + +  SS 
Sbjct: 124 VTSLLATKFKVQKTEGNFNNH----------IGLPLTIL---SLEENTEMAVLEMGMSSR 170

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +      +  A   TN+G  H+    ++ A   AK+ +   L            D  
Sbjct: 171 GEIEFLSKLARPNAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVY--NGDEP 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                  + N     ++ G      +      +          + ++  F  P+ G+  V
Sbjct: 229 LLTNRVPSMNLAAETITFGDARANNYYPTSVTLQATGTYFKMNQDENVVFYLPVLGKHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           YN L +  +    G+    + + L  L +   R E V T +    I   Y  +  ++E  
Sbjct: 289 YNTLASMAIAKYFGVTWEEMKQGLVTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAA 348

Query: 373 LKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
              +  +    + IVV G     GD++      +GK+        + T
Sbjct: 349 FHLMNGLDGFSKKIVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFT 396


>gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 466

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 148/443 (33%), Gaps = 24/443 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++   L+   +   E  +   S+D+R      +F A+ G   D H ++  A+A
Sbjct: 1   MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV      +        + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCVAVVVERECECE-------IDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 113

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          +
Sbjct: 114 KTTVKEMTAKILQKM---------TACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVI 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   +      AK  ++  L       +
Sbjct: 165 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIV 224

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  +  R   +   + S          + V    +  + T+     +    
Sbjct: 225 NLAFYYPQWQKEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAID 284

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G+  V NAL A  L +++G     V   LE+  +V GR   V  N     I   Y 
Sbjct: 285 LPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDSYN 344

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              +S++  +  +    + RI  V      G+        +   A + A   IV      
Sbjct: 345 ANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV----SF 400

Query: 422 SEDPEKIRAEIIHGIPGFIEKGN 444
            ++   I  +  H      +  +
Sbjct: 401 GKESAVISQQAEHHFTDKQQMVD 423


>gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
 gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
          Length = 455

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 165/474 (34%), Gaps = 49/474 (10%)

Query: 8   YKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
            K   ++   L I     + E  +  +  D+R I+AG +FV  VG   DGH F+ QA   
Sbjct: 2   KKTLKQIKEMLQIETRSPFDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKA 61

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A                 ++ P++ VD+T   L   A+    +    ++AVTG++GK
Sbjct: 62  GASAAFWQKDVPNP------PADFPLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  + + +       G  +          LT P    +A     ++ +    V 
Sbjct: 116 TTTKDILSGMLRETFRVHRTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVL 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + +   +               TN+G  HI+Y  +++   NAK  +   L         
Sbjct: 175 SQIAQPDIA------------IITNIGEAHIEYLGSREEIANAKFEIVTGLKADGLFIY- 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                  + ++        R ++ G   +            +     + +  D +F  P+
Sbjct: 222 ----PGDEPLLTEHTALPARSVTFGRTDQATIFATTIKTSEEGTTFTTNQTADREFYVPI 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE  V+N++ A      +G++   +   L  +     R E++ T      +   Y  + 
Sbjct: 278 IGEHNVFNSMAAMLAAFELGVEPETIQTALRHIDRSKSRLEWLTTPKGSRILNDAYNSSP 337

Query: 367 NSLEMILKNIRTITS--GRIIVV--------FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +L+ +L     + +   + +V+        F     ++  +    G++A         T
Sbjct: 338 TALKTVLNTFLNMPTAAKKYLVLADMLELGDFSEQLHQESARTLENGEVAGVF---LYGT 394

Query: 417 -DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKG 468
              N   E    I      G        +  EA+  A+       + ++V  KG
Sbjct: 395 AMKNFADEAASLI------GQEKVHYFTD-KEALTDAVSNALTGNEWILV--KG 439


>gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
 gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
          Length = 455

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 150/477 (31%), Gaps = 45/477 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH FI
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +    +  +        +  ++ VD+    +   A     K    ++ +
Sbjct: 54  ASAINNGASATLWKKGHPNK------PEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H L  +     +   +  +        +           + L +
Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  ++   A               +            T +V   + 
Sbjct: 214 DGEFIFNGDEPLLQERAEKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTVNDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEKGDAGESIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  +L +   +     GR I V G   +  +    +   +A  + D  I+ +
Sbjct: 330 IYNSNPTAVRAVLTSFGQVEVKDGGRRIAVLGDMLELGKKSPELHAGLADTM-DPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   +              E+ +R+  I      +   D++V+  KG
Sbjct: 389 VYLYGSEMKNLYDALQGKYEPEHLHYYTQEQTDRM--IDDLKNDIKSDDIVVL--KG 441


>gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
 gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
          Length = 458

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 165/481 (34%), Gaps = 52/481 (10%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  +        +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A
Sbjct: 1   MIKRTVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA A++ +           +         D+T   L   A+R   +    ++ VTG+
Sbjct: 61  AQKGAVAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGLKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +           G  +               P+ L    S      + 
Sbjct: 115 NGKTTTKDMIAALLSTHYRVQKTEGNLNNH----------IGVPLTLL---SLDEGTEMA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S  G  +      +  A   TN+G  H+    +++    AK+ +   L      
Sbjct: 162 VVEMGMSGFGEIERLTMIARPDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                +   ++ V K +          G Q    +   V          I+       F 
Sbjct: 222 VYHGDEPLLTERVPKLSLPRHVVTFGAGEQN-DYYPTDVRIEAGGTSFVINALPGRTLF- 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYNAL A  +    GID   +   L +L V   R E V T      I   Y 
Sbjct: 280 MPVLGKHHVYNALAAIAVARFFGIDWEGIDAALSRLQVTRMRTEVVKTKYGFTVINDAYN 339

Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT--- 416
            +  S+   L  ++ ++  R  I V G     GD +      +G++        + T   
Sbjct: 340 ASPTSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGP 399

Query: 417 -------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV-AGK 467
                     P  +D                E  +   A+  A+       D++++ A +
Sbjct: 400 LAHHIAAAAAPFFDD------------GRVREFDD-KAALAEAVRSVATSDDIVLLKASR 446

Query: 468 G 468
           G
Sbjct: 447 G 447


>gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 455

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 153/465 (32%), Gaps = 35/465 (7%)

Query: 10  DFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            F E+   L+              V  DSR +Q   +F+A+ G K DGH F+ +   +GA
Sbjct: 7   TFHEICQILNSPVFPAEIDSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFLNEVEKKGA 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A +VS+ +  Q+       + PIL VD+  + L   A     +    I+A+TG+ GK++
Sbjct: 67  AAAIVSNDFLRQN---KTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIVAITGSVGKTT 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               + Q+ Q+    +F  G         Q++++  P  I                + + 
Sbjct: 124 TKHLLFQLLQKHFSVAFSPGN--------QNSQIGLPLSILNHYHGHEDVLI----LEMG 171

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            ++ G  Q  ++         T L   H+    + +   +AK  +               
Sbjct: 172 MTAQGHIQKLIEIAPPDIAIVTALELVHVAGVHSLENIAHAKREILTHPKTM------LG 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                       H  G                 +       Q+  S          P  G
Sbjct: 226 LIPSEIPFYALLHETGTCRKQSFSTLSIQADYCLREQDQHLQIRDSQGLSPLLPRLPFLG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +   +N L A   C A+G+  + + + +  L +   R E V        I   Y     S
Sbjct: 286 KHNQHNFLAAISACRALGMTWSDIQQVIPTLTLPERRLEQVIKKGI-LFINDSYNAALTS 344

Query: 369 LEMILKNIRT--ITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++  L  +      SG+ I V G     G   +     +G ++L   D+ I   D     
Sbjct: 345 VKAALDALPPPLQFSGKRIGVIGEMVELGTFSEACHREVGILSLAKLDLMICYGDGC--- 401

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               I                  + I    + +   DV+++  KG
Sbjct: 402 --LPIEEVWKKHNKPVHLTLTFEQVIAELKQHVLPGDVVLL--KG 442


>gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
 gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
          Length = 455

 Score =  135 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 153/405 (37%), Gaps = 26/405 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L++Q     +   + +I  V SDSR I    +FVA+ G K DGH F   A+  GA A++V
Sbjct: 8   LLSQRLNGRLIGSDTEILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLALENGASALLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S   +L         + P L+V +T+K +    + L        +A+TG++GK+SV   V
Sbjct: 68  SRELAL---------DIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKTSVKEMV 118

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I  +     +  G  +               P+ L         +      + A+  G
Sbjct: 119 ASILSQHHKVLYTAGNFN----------NEIGVPLTLL---RLEGDEEYGVFELGANHLG 165

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +    +K       N+   H++   + +    A        L  +  A+I  DD ++
Sbjct: 166 EIDYTSSLVKPDVAMVNNVASAHLEGFGSLEGVAKA-KSEIFNHLSADGIAVINLDDPFA 224

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +   A        ++  Q      + V     + + T++          PL G  QV 
Sbjct: 225 DVMRGAASQFTQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVS 284

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +C+++G+    VL  L+ +  V GR        R   I   Y     S+   +
Sbjct: 285 NALAATAICLSLGLSLEEVLSGLKLVEPVKGRM-LPHELGRVRIIDDSYNANPASVGAAI 343

Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             ++ I   R +V+   G  GD        +G+ A      A+ T
Sbjct: 344 DWLQEIDGFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFT 388


>gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 452

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGTESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
 gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
          Length = 455

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 160/475 (33%), Gaps = 41/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +    +  +       ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLWKKGHEGK------PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             PS              
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM + + L   
Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + +++       +  S     +   +            T  V   + 
Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQDKSTFGFREEDTVFATTFRSYMHHATFEVNDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++   +     +  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENYEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     +++ +  +   +     GR I V G   +       +   +A  L D AI+ +
Sbjct: 330 VYNSNPTAVKAVTTSFGQVMVKDGGRRIAVLGDMLELGDESAELHASLANAL-DPAIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   ++   P     +  +      I      +   D++++  KG
Sbjct: 389 LYLYGPEMKNLYDALVDKYPAANLHYYPQDEMNHMIDDLKNDIKPDDIVML--KG 441


>gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 455

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 153/475 (32%), Gaps = 41/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNTTCESDEKTIITSVAFDSRKITDGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +       +        +  +L VD+  + +   A     K    ++ +
Sbjct: 54  AGAINNGASATLW------KKGHPNKPDDIAVLEVDDPLEAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQENFNNGIGVPMTILEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +         T +G  HI++  T+    +AKM + + L   
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTHPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLRED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + ++        +  +         +        K   T ++   + 
Sbjct: 215 GEFIYN-----GDEPLLAERAKKINQAKATFGFEDNDTVYATGFRSYKHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIAASLANFTPTANRMEWEKGDVGEDIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  +L +   I     GR I V G   +  +    +   +A  L D  ++ +
Sbjct: 330 VYNSNPTAVRAVLNSFGQIEMPNGGRRIAVLGDMLELGKKSPELHAGLANSL-DPQVINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ++ + +   +          + +  +    I      +   D++V+  KG
Sbjct: 389 VYLIGDEMKHLYEALQTKYSEESLHYYQADHMDHMIDDLKNDIKPNDIVVL--KG 441


>gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
 gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
          Length = 458

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 164/481 (34%), Gaps = 52/481 (10%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  +        +W    ++ VS+D+R IQAG ++V + G   +GH F+ +A
Sbjct: 1   MIKRTVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA A++ +           +         D+T   L   A+R   +    ++ VTG+
Sbjct: 61  AQKGAAAVLWAEREGTPPEGVPVVVV------DDTLLALQRLAARYREQLGLKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +           G  +               P+ L    S      + 
Sbjct: 115 NGKTTTKDMIAALLSTHYRVQKTEGNLNNH----------IGVPLTLL---SLDEGTEMA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  S  G  +      K  A   TN+G  H+    +++    AK+ +   L      
Sbjct: 162 VVEMGMSGFGEIERLTMIAKPDAAVITNIGESHLQELGSREGIAKAKLEILAGLHHDGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                +   ++ V K            G Q    +   V          I+       F 
Sbjct: 222 VYHGDEPLLTERVPKLPLPRHVVTFGAGEQN-DYYPTDVRIEAGGTSFVINALPGRTLF- 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  VYNAL A  +    GID   +   L +L V   R E V T      I   Y 
Sbjct: 280 MPVLGKHHVYNALAAIAVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYN 339

Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT--- 416
            +  S+   L  ++ ++  R  I V G     GD +      +G++        + T   
Sbjct: 340 ASPTSMRAALMLLQELSGYRQKIAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGP 399

Query: 417 -------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV-AGK 467
                     P  +D                E  +   A+  A+       D++++ A +
Sbjct: 400 LAHHIAAAAAPFFDD------------GRVREFDD-KAALAEAVRSVATSDDIVLLKASR 446

Query: 468 G 468
           G
Sbjct: 447 G 447


>gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 464

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 148/443 (33%), Gaps = 26/443 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++   L+   +   E  +   S+D+R      +F A+ G   D H ++  A+A
Sbjct: 1   MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCVAVVVERECEI---------DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          +
Sbjct: 112 KTTVKEMTAKILQKM---------TACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   +      AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIV 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  +  R   +   + S          + V    +  + T+     +    
Sbjct: 223 NLAFYYPQWQKEIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAID 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G+  V NAL A  L +++G     V   LE+  +V GR   V  N     I   Y 
Sbjct: 283 LPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDSYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              +S++  +  +    + RI  V      G+        +   A + A   IV      
Sbjct: 343 ANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV----SF 398

Query: 422 SEDPEKIRAEIIHGIPGFIEKGN 444
            ++   I  +  H      +  +
Sbjct: 399 GKESAVISQQAEHHFTDKQQMVD 421


>gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
 gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
          Length = 452

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 97/451 (21%), Positives = 159/451 (35%), Gaps = 58/451 (12%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L D++  +             Q  +  ++ V++D+R +  G +FVA+ G + D H F  
Sbjct: 8   QLTDILNGEL------------QGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAD 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA A GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+T
Sbjct: 56  QAKAGGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALT 106

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK+SV      I  + G + +  G  +            TP                
Sbjct: 107 GSSGKTSVKEXTAAILSQCGNTLYTAGNLNNDIGVPXTLLRLTPE-------------YD 153

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + A+  G     +   +  A    NL   H++   +      AK  +F   LP+ 
Sbjct: 154 YAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPEN 212

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI  AD+           +      S            +    +  + T+       D
Sbjct: 213 GIAIXNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVD 272

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            L PLPG   + NAL AA L  ++G     +   L  L  VPGR   +        +   
Sbjct: 273 VLLPLPGRHNIANALAAAALSXSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDS 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y     S    ++ +      R++VV         G    +G  A   A    V      
Sbjct: 333 YNANVGSXTAAVQVLAEXPGYRVLVV---------GDXAELG--AESEACHVQV------ 375

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
            E      A    GI   +  G +  AI TA
Sbjct: 376 GE------AAKAAGIDRVLSVGKQSHAISTA 400


>gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
 gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
          Length = 454

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 175/473 (36%), Gaps = 39/473 (8%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  +   ++    + E +I  V++D+R +  G +F+ ++G   +GH F  +A
Sbjct: 1   MIKRTVNQIAQMAGGTLSNQAFGEEQIYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A++ +         A      P+++VD+T   L   A     +    ++ +TG+
Sbjct: 61  VELGAAAVLWNQK------EANPPFGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  + Q +       G  +          L  P    +A            
Sbjct: 115 NGKTTTKDMIHSVLQTTYQVHKTDGNFNNH-IGLPLTILAMPEGTEIA------------ 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G  +   +  +      TN+G  H+    +++A  +AK  + + L    + 
Sbjct: 162 VLEMGMSAKGEIEFLSNLAEPETAVITNIGESHMQDLGSREAIADAKCEITKGLKKDGTF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             +       + +++    A  + +    + +   +K        +     VEG    FL
Sbjct: 222 YYL-----GDEPLIRDRATALSQQVKTFGEAEDCDIKVTHINQLAEGTEFQVEGYAQGFL 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G+  V NAL A  +    G++   + + L +  +   R E   T      I   Y 
Sbjct: 277 IPVLGKHNVKNALAAIAIGQHFGLNERQIAQGLMQTKLTGMRLELFKTEKGITVINDAYN 336

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGC---GGDRDQGKRPIMGK-IALDLADIAIVTDD 418
            +  S++  +  +  +      I+V G     G  ++     +G+ I  +  D  +    
Sbjct: 337 ASPTSMKAAIDLVGDMDGFANRILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVM---- 392

Query: 419 NPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                    I        G        ++ E  +   ++    DV++V A +G
Sbjct: 393 -TYGRLGAFIAEGAKKSFGDARVFSFMDKEELKKKLADVAGPDDVVLVKASRG 444


>gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis M50/1]
          Length = 470

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 171/480 (35%), Gaps = 43/480 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  +   E+   +       ++++I     DSR +++G++F+A+ G K DGH FI
Sbjct: 1   MK--NMTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ   +GA A++     S            P + V++T   +   A+         ++ +
Sbjct: 59  PQVFEKGALAVLSEQELSDPAG--------PYIRVESTLGAMKKLAAYYRRSLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +        G  +               P+ + K        
Sbjct: 111 TGSVGKTSTKEMIASVLSQKYNVLKTEGNFN----------NEIGLPLTIFKI---REQH 157

Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  S  G + HRL +         TN+G  H++   T+     AK   FE L P
Sbjct: 158 EVAVLEMGISEFG-EMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTP 216

Query: 240 KESPAIIYADDAYS------------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH- 286
           + +  +   DD                 + K A  A           K ++   V  +  
Sbjct: 217 EGTAVLNGDDDKLCEKKMVNGKPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPVGL 276

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +  +  I +  + F    P+ GE  VYNAL A  +   +G+    +   +E +  + GR 
Sbjct: 277 DGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS 336

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             +            Y     S++  +  +     GR I V G  G+  + ++ +   + 
Sbjct: 337 NLIHKGGMTIIDDC-YNANPVSMKASIDVLAA-APGRKIAVLGDMGELGENEQELHAMVG 394

Query: 407 LDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  I  +      SE+  +   +             + E +   +  +   D ++V
Sbjct: 395 EHFEGKGIDALFAAGALSENLAQAVGK-CSKETEVHYFKTKDELMEELLPYVKSGDTVLV 453


>gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 452

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 168/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G   +AI  A
Sbjct: 378 -----AAKAAGIDRVLSTGKLSQAISHA 400


>gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
 gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
          Length = 464

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 144/388 (37%), Gaps = 28/388 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I +   +L   L+   +   E  +  +S+D+R      +F A+ G K D H ++ +AI 
Sbjct: 1   MIKQTTQQLAQTLNAKLLGSGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV    ++         N P ++V++TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQR----SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           K++V     +I Q+         +  G  +            TP                
Sbjct: 112 KTTVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPE-------------HK 158

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLP 239
              V + A+  G   +  +  +  A    N+   H++   +      AK  ++   +   
Sbjct: 159 FAVVELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKAGG 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K    + +    + KE+      + C              + V    N  + T+     +
Sbjct: 219 KAIVNLAHYYPEWQKEIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGE 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P  GE  V NAL A  L +A+G D   V   LE+   V GR   +        I 
Sbjct: 279 IEINLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFID 338

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV 387
             Y    +S++  +  ++   + RI VV
Sbjct: 339 DSYNANVDSMKSAVSVLKQYPAFRIFVV 366


>gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 455

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 141/418 (33%), Gaps = 35/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +       +     + ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLW------KKGHEGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             PS              
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM + + L   
Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + +++       +  S     +   +            T  V G   
Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQEKSTFGFREEDTVFATTFRSYMHHATFEVNGSTQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++   +     +  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            Y     ++  +  +   +     GR I V G   +       +   +A  L D AI+
Sbjct: 330 VYNSNPTAVRAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASL-DPAII 386


>gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis XB6B4]
          Length = 470

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 171/480 (35%), Gaps = 43/480 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  +   E+   +       ++++I     DSR +++G++F+A+ G K DGH FI
Sbjct: 1   MK--NMTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ   +GA A++     S            P + V++T   +   A+         ++ +
Sbjct: 59  PQVFEKGALAVLSEQELSEPAG--------PYIRVESTLGAMKKLAAYYRRSLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +        G  +               P+ + K        
Sbjct: 111 TGSVGKTSTKEMIASVLSQKYNVLKTEGNFN----------NEIGLPLTIFKI---REQH 157

Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  S  G + HRL +         TN+G  H++   T+     AK   FE L P
Sbjct: 158 EVAVLEMGISEFG-EMHRLAEMAYPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTP 216

Query: 240 KESPAIIYADDAYS------------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH- 286
           + +  +   DD                 + K A  A           K ++   V  +  
Sbjct: 217 EGTAVLNGDDDKLCEKKMVNGKPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPVGL 276

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +  +  I +  + F    P+ GE  VYNAL A  +   +G+    +   +E +  + GR 
Sbjct: 277 DGTKAVIHIGAESFAVTIPIAGEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS 336

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             +            Y     S++  +  +     GR I V G  G+  + ++ +   + 
Sbjct: 337 NLIHKGGMTIIDDC-YNANPVSMKASIDVLAA-APGRKIAVLGDMGELGENEQELHAMVG 394

Query: 407 LDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  I  +      SE+  +   +             + E +   +  +   D ++V
Sbjct: 395 EHFEGKGIDALFAAGALSENLAQAVGK-CSKETEVHYFKTKDELMEELLPYVKSGDTVLV 453


>gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica W22703]
          Length = 454

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 144/405 (35%), Gaps = 24/405 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L   L+   +      I EV+ D+R +  G +FVA+ G + DGH F      
Sbjct: 1   MIKVSLHFLSTLLNAEYIGRDSVDITEVTIDTRKVTPGCLFVALKGERFDGHDFAED--- 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                  V++       S  +    P LVV +TR  L   A+ +  + P  ++A+TG+SG
Sbjct: 58  ------AVAAGAGALLVSKHLLVEAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   V  I ++ G   +  G  +            TP                   +
Sbjct: 112 KTSVKEMVAAILRQCGKVLYTSGNFNNDIGVPLTLLRLTPE-------------YDFAVI 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  D  +  +    NL   H++   +      AK  +F  L    +  I
Sbjct: 159 ELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAII 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + +        +    R    G +        V         T+           P
Sbjct: 219 NADSNDWPHWQETLHNKRVWRFSPHGAEDIDFFASDVRITPKTTYFTLHSPLGTVAIELP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G   A V E L +L  VPGR   +   +    +   Y   
Sbjct: 279 LPGRHNIANALAAAALAMSVGASLAAVREGLTQLQAVPGRLFPIELAAGKLLLDDSYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
             S+    + +  +   R++VV   G  G+        +G+ A  
Sbjct: 339 VGSMTAAAQVLAEMPGYRVMVVGDMGELGETAVDCHRQVGEAAKQ 383


>gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Lactobacillus crispatus ST1]
 gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus ST1]
          Length = 455

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 150/477 (31%), Gaps = 45/477 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH FI
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +    +  +        +  ++ VD+    +   A     K    ++ +
Sbjct: 54  ASAINNGASATLWKKGHPNK------PEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H L  +     +   +  +        +           + L +
Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  ++   A               +            T +V   + 
Sbjct: 214 DGEFIFNGDEPLLQERAEKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTVNDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFTPTANRMEWEKGDAGESIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  +L +   +    +GR I V G   +  +   P +     D  D  I+ +
Sbjct: 330 IYNSNPTAVRAVLTSFGQVEVKDNGRRIAVLGDMLELGKNS-PELHAGLEDTLDPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   +              E+ +R+  I      +   D++V+  KG
Sbjct: 389 VYLYGSEMKNLYDALQDKYEPEHLHYYTQEQTDRM--IDDLKNDIKSDDIVVL--KG 441


>gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 456

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 98/468 (20%), Positives = 167/468 (35%), Gaps = 38/468 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L       ++    +      + +IN +S+DSR +Q+G +FV + G   DGH ++ QA+
Sbjct: 2   NLTSDQVATIVGGRRL--AAATDPEINGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQAV 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A +                  P++ V++T + L   A  +       +LAVTGT+
Sbjct: 60  EHGAAACLSE--------EVVGGLPVPVIQVEDTLQALGELARTIRSGFDGPVLAVTGTT 111

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    +  I           G     +    +N +  P  + LA+            
Sbjct: 112 GKTSTKEMLASI--------LAQGSDGLKTEGNFNNLIGLP--LTLARLSDEHR---WMV 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S HG  +   +  +      TN+G  H+      +    AK  LF   L   + A
Sbjct: 159 LELGMSQHGEIERLTEIAQPDVALITNVGAGHLAGVGNIEGVARAKGELFSG-LKAGATA 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DDA    +       G RV+      +            +   T+ V         
Sbjct: 218 VVNRDDA---LIAALPIPDGVRVIDFSLTYQTQVRATSIDSGQQASFTLHVGESQVRVEL 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG  QVYNAL AA    A+G     +   L  + +  GR E          +   Y  
Sbjct: 275 PLPGRHQVYNALAAAAAAHAVGCSLEQIATGLGCVKMAAGRLEVRTLPHGATVLDDSYNA 334

Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420
              S++  L  +      G  I V G     GD  Q     +G++A   A+  +   D  
Sbjct: 335 NPQSMQAALSVLSDWPCQGTKIAVLGDMLELGDVSQACHEELGRLAAQRAEQVLCYGDW- 393

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +   ++          +  E +      + + D ++V  KG
Sbjct: 394 ----AAAVLKGVVEQGGQGAICTSHDEILDWLERQVREDDCILV--KG 435


>gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999]
          Length = 469

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 79/468 (16%), Positives = 161/468 (34%), Gaps = 34/468 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++  Q++   +Q  +  I  VS+D+R I A  +F+A+VG   +GH+F  +A  
Sbjct: 1   MINLSLIDIAQQVNGT-LQGNDLIITNVSTDTREISADSLFIALVGPNFNGHVFANEARQ 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++ S              + P+++V++T+  L    + +  K     + +TG+SG
Sbjct: 60  NGAVAMIASEPVEA---------HMPVIMVEDTKAALGALGAYVKQKVAPKTVGITGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I +  G      G  +               P+ L +  +      +   
Sbjct: 111 KTTVKEMTTAILKECGSVLSTQGNFN----------NDIGVPLTLLRLEAEHEYAVIEMG 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +            +        +      +            +   +   +         
Sbjct: 161 ANHIGEIAYTTGLVKPDVATIVNAAASHLEGFGSLFGVARAKSEIFKGLSKSGTAILNYD 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D +  ++      +     + G    +   +   A +      +     + +    
Sbjct: 221 SQFYDFWLGKLDNELIYSFSLNSAPGKGADYSASQVGLAFNGCAHFIMHTPIGEMNIELT 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   V NAL+AA L I +G     V + L K+  V GR E    + +   +   Y   
Sbjct: 281 LPGIHNVGNALLAAALSINVGASLENVRDGLAKIQHVKGRLEVKQLSEKVRLLDDSYNAN 340

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             S+   +K + +    R++V+      GD+ +     +G++A   +     T      E
Sbjct: 341 VASVTAAIKLLSSYEGRRVLVLGDMAELGDQARHYHEQVGELAKSESIEMFYTL----GE 396

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKG 468
             +        G   F      ++A+    + L   D    ++V  KG
Sbjct: 397 LSKSASDMFGEGGQHFSHIEPLLDAL---YKELYANDNEFTILV--KG 439


>gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
 gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
          Length = 455

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 141/418 (33%), Gaps = 35/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +       +     + ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLW------KKGHEGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             PS              
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM + + L   
Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + +++       +  S     +   +            T  V G   
Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQEKSTFGFREEDTVFATIFRSYMHHATFEVNGSTQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++   +     +  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            Y     ++  +  +   +     GR I V G   +       +   +A  L D AI+
Sbjct: 330 VYNSNPTAVRAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASL-DPAII 386


>gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
 gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
          Length = 469

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 87/467 (18%), Positives = 163/467 (34%), Gaps = 36/467 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+        +     + + VS+DSR +  G +FVA+ G + DGH FI  A+++G  
Sbjct: 5   TLNEIAEATGGRVIGEAAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSKGVT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +   +++ +     +      ++V +T + L   A+    +     + VTG++GK++ 
Sbjct: 65  IFLAEESWAAKH---ELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              + +I  ++G      G  +               P+ +         +      +  
Sbjct: 122 KEMLARILAQTGPGLKTEGNLN----------NLIGLPLTIF---RLTGRERWAVFEIGM 168

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S  G +  RL  I +   G  TN    H++   + +    AK  LF   L   S A+   
Sbjct: 169 SEFG-EIDRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLR-LKPGSVAVYNV 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD          +         G   +             +  T+ +   +        G
Sbjct: 227 DDPLVSTCPTHLNVTRLTFGLRG--AEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              +YNAL AA    A+G+   L+ + LE+      RF+          I   Y     S
Sbjct: 285 RHNIYNALAAAAAAHALGVPGDLIRQGLEEFSPYDKRFQLEEVAGV-TLIDDSYNANPAS 343

Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   L  ++ +   GR++ V G     G   +     +GK+A    D   +       E+
Sbjct: 344 MAAALTTLKELQGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGNVDRLYLLGK--LVEE 401

Query: 425 PEKIRAEIIHGIPGFIEKGNRIE---AIRTAIEMLNKQDVLVVAGKG 468
             K    +  G+P       R     A +  +  +   D ++   KG
Sbjct: 402 TAK--GALEAGLPAADLVLGRDHDQLA-QELLSFVQPGDCILF--KG 443


>gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
 gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
          Length = 456

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 164/453 (36%), Gaps = 43/453 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  I  V +D+R+I  G +F+ IVG + +GH F+ QAI +GA+A + S+        A 
Sbjct: 23  EDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRGAKAALWSTK------EAD 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              + P++ V++T + L   A          ++AVTG++GK++    +  +C+       
Sbjct: 77  APEDLPLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKDMMAAVCETLWKVQK 136

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G          +N +  P  I     L+         + +  S  G  +      +  
Sbjct: 137 TQGN--------FNNHIGMPLTI-----LALQKDTEAVILEMGMSGFGEIELLSQIAEPD 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A   TN+G  H+    +++    A      + L   +P + + D+     + +++ +   
Sbjct: 184 AAIITNIGESHLQDLGSRENIAKA-KMEIAKGLKDGAPLVFHGDEPLLTPLTEQSPH--- 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +L+ G++    +  +                +   +   + G   V NA+         
Sbjct: 240 PLLTFGHRDTNRYFPQEIVHEPNGTRFNVGGNEIGSYFITVLGAHNVLNAIAVIATARWF 299

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           GI+   +    + + +   R E +        I   Y  +  S++  L+ ++ +      
Sbjct: 300 GIEDHKINLGFQSVQMTGMRLEQLSGADGVTIINDAYNASPTSVKAALELVQDMKGHQNK 359

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----- 436
            VV G     G+ ++      G +    A   + T           +   I  G      
Sbjct: 360 YVVLGDMLELGEAEEMFHFDTGAMIDPAAITGVFT--------YGTLSEHIQKGALRRFE 411

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +   ++   I     +L   D++++  KG
Sbjct: 412 EERAMHFSDKPALISHLKSVLKSDDLVLI--KG 442


>gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
 gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
          Length = 452

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 92/465 (19%), Positives = 167/465 (35%), Gaps = 44/465 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + ++    ++  +  ++ V++D+R +  G +FVA+ G + D H F  +A   GA A++VS
Sbjct: 9   LAEILRGELKGADLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADKAQESGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      + +N P L+V +TR      A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RP---------LDTNLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +                                 + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLNND-------------YDYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  +F   L     AI+ AD+    
Sbjct: 167 IAWTVGLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LSANGIAIMNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + ++       D L PLPG   + N
Sbjct: 226 NWQSIIGDRKVWRFSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +A+G     +   L+ L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAAAALSMAVGATHEAIKAGLKDLQAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIAIVT-------DDNP--- 420
            +  +   R++VV      G   +     +G +A   A  D  + T        D     
Sbjct: 346 VLSEMPGYRVLVVGDMAELGAESEACHVQVG-VAAKAAGIDRVLSTGKLSQAISDASGVG 404

Query: 421 -RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQ 459
               D   + A +   I        + KG+R  A+   +  L + 
Sbjct: 405 EHFADKSALAAHLKALIAEHQVMTILVKGSRSAAMEEVVRALQEN 449


>gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
 gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 452

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 155/386 (40%), Gaps = 19/386 (4%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                    VS+DSR ++ G +F+A+ G + DGH FI  AI  GA   +VS+  ++    
Sbjct: 16  SGDNAVFTGVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIENGAVTAMVSADTAI---- 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              + +   + V +TR  L   A+    ++   ++AVTG++GK++V   +  I +     
Sbjct: 72  LPTQPDFGWIKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVKEMIAAIFRCEFGL 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              +  T  +++                  L   S      + +  +  G          
Sbjct: 132 ENVLATTGNLNNDIGVP----------QMLLQLDSRHVGAVIEMGMNHAGEIAWLSRLAA 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN G  HI+Y  T +A   AK  +FE  L ++  AII ADD +++   + A N 
Sbjct: 182 PTIAVITNAGTAHIEYLGTTEAIARAKGEIFEG-LEEQGVAIINADDPHARLWRQLAGNR 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                S+   G      +  A  +  +  + +     +    +PG   VYNAL AA    
Sbjct: 241 PVVDFSMN--GTAAVSARQPAHPSGDRWLLQLPDDTIEITLQVPGRHNVYNALAAAAAAT 298

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A GI ++ + E L     VPGR +     +R   I   Y    +S++  L  +  +   +
Sbjct: 299 AAGISTSSIAEGLHSFRGVPGRLQKKTGLNRSVLIDDTYNANPDSMQAALNVLAEMPGKK 358

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIAL 407
           I+++   G  G         +G+ A 
Sbjct: 359 ILIIGDMGELGADTATFHHRIGQQAA 384


>gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
          Length = 476

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 143/393 (36%), Gaps = 31/393 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F AI G + DGH F+  A+A GA  IVV    +     A   S 
Sbjct: 27  ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTAAMAAGAGLIVV----AEHRLPAFGNSK 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L+        +    I+AVTG+ GK++    ++ +    G     +  
Sbjct: 83  VPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTKEALRHVLSEVGKVHASVAS 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207
            +               P+ LA+  +        +   E   +  D+ R  +  ++    
Sbjct: 143 FNNHWGV----------PLTLARMPAD-----TDYGVFEIGMNHHDEIRPLVKMVRPHVA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   H+ +    +    AK  +FE  +     A++  DD   K++ + A  AG   
Sbjct: 188 LITLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFKQLEELAEKAGVEH 246

Query: 268 L--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +            L++V        +T+     +      +PG   V N L   G    +
Sbjct: 247 IVTFGENARSDYRLREVKLHPTCSCMTVKAGTHEAAVKVGMPGRHIVQNMLAVLGAADLV 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRT 378
           G D A V+  +  L    GR       +  G    +D  Y     S+             
Sbjct: 307 GADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHSTAPE 366

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            + GR I V G   +  +    +   +A  + D
Sbjct: 367 GSRGRRIAVLGDMLELGRQSGKLHADLARPIVD 399


>gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 452

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 96/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G   +AI  A
Sbjct: 378 -----AAKAAGIDRVLSTGKLSQAISHA 400


>gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 452

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGAIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 452

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
 gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
          Length = 447

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 148/450 (32%), Gaps = 43/450 (9%)

Query: 6   LIYKDFPELIN-QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I +    +           + E  I+ VS DSR+I  G +F+   G   DGH ++  AI
Sbjct: 3   MINRSLNWIKKHTTGTLDAMYEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAI 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A +             +  + P++VV++T   L   +     +    ++AVTG++
Sbjct: 63  DKGAYAALWQRDAGE------VPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSN 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G                  P+ L           ++ 
Sbjct: 117 GKTTTKDMIEAVLSPHFKVKKTQGN----------YNNEIGLPLTL---CQLDEDTEISI 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S  G         +    + TN+G  H+    +++    AK  + + L       
Sbjct: 164 LEMGMSGFGEISLLSHIAEPHIAAITNIGESHMRDLGSREGIAKAKYEITDGLTGPLFY- 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    + ++K           +G+     +          Q   +  +  D  ++ 
Sbjct: 223 ------DGDEALLKPLVKDNKDAHRIGFNEDNEYY---IHEMIMQDKHLQFKVNDDTYIV 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  G     NA +A  +   +G+    +   L++L +   R E +        I   Y  
Sbjct: 274 PTLGSHNARNATIAIAIGSYLGLSPEQINHSLQQLKLTGMRMEQLEGKDGALLINDAYNA 333

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  +  + S   I+VFG     G+ +      +G          + T  N  
Sbjct: 334 SPTSMKAAIDTVSQMDSEVKIIVFGDVLELGEDEVMYHEQVGAYLQGKQIDYVFTTGNA- 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKG--NRIEAI 449
                     I      F      +  EA+
Sbjct: 393 -------ARHISKAAEPFTTVQHFDTKEAL 415


>gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
          Length = 455

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 142/418 (33%), Gaps = 35/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +       +     + ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLW------KKGHEGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             PS              
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM + + L   
Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + +++       +  S     +   +            T  V G   
Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQEKSTFGFREEDTVFATTFRSYMHHATFEVNGSTQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++   +     +  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            Y     +++ +  +   +     GR I V G   +       +   +A  L D AI+
Sbjct: 330 VYNSNPIAVKAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLAASL-DPAII 386


>gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 452

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 452

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 95/448 (21%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVV----GD--------MAELGAESEACHIQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G   +AI  A
Sbjct: 378 -----AAKAAGIDRVLSTGKLSQAISHA 400


>gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
 gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea]
 gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
          Length = 455

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 148/414 (35%), Gaps = 29/414 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  +   +  +L+   +   + +   VSSDSR I    +FVA+ G+K DGH F   A+ 
Sbjct: 1   MIPLNLSGICQRLNARLVG-ADVEFCHVSSDSRAIPEQTLFVALKGDKFDGHNFANTAVE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V            +  N   ++V +T++ +    + L        +A+TG++G
Sbjct: 60  NGAIALLVDHE---------LPLNITQVIVKDTQRAMGELGAYLKELIQPRSVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SV   V  I  +     +  G   + I       RL       + +  +    +    
Sbjct: 111 KTSVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEADDEFGVFELGANHKGEIDYT 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            S+      L                N+   H++   + +   +A        L     A
Sbjct: 171 SSLVKPDVAL--------------VNNVASAHLEGFGSLEGVASA-KSEIFNHLTPTGTA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II ADD ++  ++  + +       +                   +  +S   +      
Sbjct: 216 IINADDGFASVMLAASTDYTQLTFGIDSAADIQASDLEADPMGCYRFKLSYLRETLLIAL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG  QV NAL A  +C++ G+    +      L  V GR            I   Y  
Sbjct: 276 PLPGRHQVSNALAATAICLSFGLTLDEIKLGFSLLVPVKGRMLPTQLGRV-RVIDDSYNA 334

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
              S+   +  +  I   R +V+   G  GD        +G++A      +++T
Sbjct: 335 NPASVTAAVDWLHEIEGHRCLVLGDLGELGDNAPLLHTELGELARQKGLDSLLT 388


>gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 482

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/470 (15%), Positives = 154/470 (32%), Gaps = 14/470 (2%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   + + +        + + +    DSR ++AG IF A+VG + DGH +I  A  +GA 
Sbjct: 3   DSQRIADLVRGELTGDSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGAS 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++             +     ++ V++    +   A     +    ++A+TG++GK++ 
Sbjct: 63  VVIGEKERLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTT 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V  +      +   +   +            T     +      +   G      + 
Sbjct: 123 KDMVAAVLSEKYRTHKNLENQNNELGLPMTILKAT-ENTEVLILEMGMRGLGQIAFLCDI 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +   +      G   +    +        +   +         L  E       A   + 
Sbjct: 182 ACPDIGVITNIGTTHMELLGSQEAIARAKWELIEALPETGSAVLNGEDEWSVKQAEHDSH 241

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPL 306
             +   +  R H    R  S+   G      +    H  + +    E +         PL
Sbjct: 242 RTFFYGLEGRFHEPDLRGRSLTPFGTLGTCFQAEMGHGDRSLVPLGEKQAASSVTVRLPL 301

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  V +AL A  + + + +        L  + +   R E          I   Y    
Sbjct: 302 PGEHNVLDALAALSVGVLLNVSLEEGCRGLAAMELSRMRLELQPGPGGSTLISDVYNANP 361

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSED 424
            S++  L+ ++       + + G   +  Q  R    ++   +AD+ I  +    P +E+
Sbjct: 362 TSMKASLQVLKERGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGISELITVGPLAEE 421

Query: 425 PEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEM---LNKQDVLVV-AGKG 468
               R  +  G+          R  AI+ A E+   LN+   +++ A +G
Sbjct: 422 IA--RGALEKGLSPQRIHSFPEREGAIKKARELLAGLNQGTWVLIKASRG 469


>gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
 gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
          Length = 440

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 140/394 (35%), Gaps = 25/394 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
                  I EV+ D+R + AG +FVA+ G + DGH F             V++       
Sbjct: 4   KAHDNVDITEVTIDTRQVTAGCLFVALKGERFDGHDFAED---------AVAAGAGALLV 54

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           S  +    P LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV   V  I ++ G 
Sbjct: 55  SKRLLVGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGN 114

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
             +  G  +            TP                   + + A+  G   +  D  
Sbjct: 115 VLYTAGNFNNDIGVPLTLLRLTPE-------------HDFAVIELGANHVGEIAYTTDLS 161

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  +    NL   H++   +      AK  +F  L    +  I      +        + 
Sbjct: 162 RPESALVNNLSAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSHDWPHWQETLHNK 221

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              R      +    +   V          +       D   PLPG   + NAL AA L 
Sbjct: 222 RVWRFSPHAAEDIDFYASDVRITPQTTYFILHSPFGIVDIELPLPGRHNIANALAAAALA 281

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +++G D A V + L +L  VPGR   +   +    +   Y     S+    + +  +   
Sbjct: 282 MSVGADLAAVRQGLTQLQAVPGRLFPIQLAAGKLLLDDSYNANVGSMTAAAQVLAEMPGY 341

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALD-LADIA 413
           R++VV      GD        +G+ A     D  
Sbjct: 342 RVMVVGDMAELGDTAVDCHRQVGEAAKQAGVDKV 375


>gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
 gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
          Length = 464

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 147/384 (38%), Gaps = 20/384 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I +   +L   L    +   E  +  +S+D+R      +F A+ G K D H ++ +AI 
Sbjct: 1   MIKQTTQQLAQTLKGKLLGSGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV    ++         N P ++V++TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V            +++ +     T  +   D  +    P+ L      +       V
Sbjct: 112 KTTVKEMT--AKILQKVTACEDQVLYTFGNLNNDLGV----PLTLL---RLIPEHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPKESP 243
            + A+  G   +  +  +  A    N+   H++   +      AK  ++   ++  K   
Sbjct: 163 ELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKVGGKAIV 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + +    + KE+      + C              + V    N  + T+     + +  
Sbjct: 223 NLAHYYPEWQKEIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  GE  V NAL A  L +A+G D   V   LE+   V GR   +        I   Y 
Sbjct: 283 LPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKDNVLFIDDSYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
              +S++  +  ++   + RI VV
Sbjct: 343 ANVDSMKSAVSVLKQYPAFRIFVV 366


>gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
 gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
          Length = 469

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 169/486 (34%), Gaps = 49/486 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ +      + +N +     +  +++I  ++ DSR +  G +F+AI G + DGH FI
Sbjct: 4   MTLRAMT-----QAVNGIYHGNGEDYDKEITAITIDSRKVAEGGLFIAIKGERSDGHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            Q   +GA  ++       ++ S         + V+++ + L   A          ++ +
Sbjct: 59  GQCFEKGAACVISEKELPDEEHS--------YIQVESSLQALKDLALLYRNNLDVKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +          +G  +            T                
Sbjct: 111 TGSVGKTSTKETISSVLSEKYRVLKTLGNFNNEIGLPLTVFRLTED-------------D 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  S  G +  RL  I +      TN+G  H++   T+     AK  +F  + P
Sbjct: 158 EVAVLEMGISDFG-EMDRLSKIAQPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNP 216

Query: 240 KESPAIIYADDA---YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                +   DD     S+   KR    G       Y      L           +  + +
Sbjct: 217 DGIVILNGDDDKLSTISQVHGKRPLVFGISNKDGVYADNIKSLGLDGTSFTIHGLDTADK 276

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              FD   P+PG   VYNA+ AA +   +G+ S  +   +  L  + GR   +  N    
Sbjct: 277 YSTFDMTVPVPGHHMVYNAMAAALVGSVLGLSSLEIERGVRNLKTIAGRNNIIKENGFTI 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
                Y     S++  L  +     GR + + G     G+ ++     +G          
Sbjct: 337 IDDC-YNANPVSMKASLDVL-DTAIGRKVAILGSMFELGENEKQMHYDVGMYLGTKDIDV 394

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVV- 464
           ++T  +       +I A     I            +   R + +++   +L   D +++ 
Sbjct: 395 LITAGDL----AAQIAAGTRAYIDTNYNAHGCEVHDFETRDDMLKSIGHILKTGDNILIK 450

Query: 465 AGKGHE 470
           A  G E
Sbjct: 451 ASHGME 456


>gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
 gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
          Length = 473

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 147/469 (31%), Gaps = 42/469 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL   +    +       +      +  V +DSR    G +FV I G + DGH + 
Sbjct: 1   MRL-DL--AEIVRCLGCARDVKVADGSVTVTSVVTDSREAVPGSLFVCIAGERVDGHDYA 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ QGA A++ +              + P+L+V +T + L   A+   GK    ++ +
Sbjct: 58  ARAVEQGAVAVLAARPLE--------GLSVPVLLVQDTVRALGAVAALWRGKSSARVVGI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  +  R G ++      +           T                 
Sbjct: 110 TGSAGKTTVKELLAHVLSRRGKTACNALNLNNQVGMPLCMLKTDGD-------------- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  EA           G  L       L           +             L  
Sbjct: 156 -EDFWVFEAGISHEGDMDELGAILQPDLALILNVGAAHTEGLGERGVAWHKSRLLAHLAP 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E  A++ AD        +          + G    +      C+     Q  + ++G+  
Sbjct: 215 EGQALVSADYDDLVREARAVFGDVLFFTASGRPLSYRAAYAGCSDGVHGQYRLWLDGRPC 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + P  G++   N +  A     +G+ +  +        + P RF      +       
Sbjct: 275 DVIAPFRGDYGTENCIAVAAAAHMLGLTAEEIAAGFADAQLPPQRFARSRRGNWDIVDDT 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV-------FGCGGDRDQGKRPIMGKIALDLADIA 413
            Y     S+  +L         R  VV        G   DR+  +   +G+    L  + 
Sbjct: 335 -YNANPLSMARMLDAAAESAQKRPFVVVLGEMRELGGVADREHER---LGRHLAQLRPVL 390

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDV 461
           +      R    + +R  + HG+  G     +  EA   A+      D 
Sbjct: 391 VFW----RGGHADAVRDGLEHGLYTGKFLPVDSGEAFVQALREHLPADT 435


>gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 476

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 89/453 (19%), Positives = 162/453 (35%), Gaps = 47/453 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F AI G + DGH F+  A+A GA  +VV    +     A   S 
Sbjct: 27  ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTSAMAAGAGLLVV----AEHRLPAFGNSK 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L+        +    I+AVTG+ GK++    ++ +    G     +  
Sbjct: 83  VPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGKTTTKEALRHVLSEVGKVHASVAS 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207
            +               P+ LA+  +        +   E   +  D+ R  +  ++    
Sbjct: 143 FNNHWGV----------PLTLARMPAD-----TDYGVFEIGMNHHDEIRPLVKMVRPHVA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   H+ +    +    AK  +FE  +     A++  DD   K++ + A  AG   
Sbjct: 188 LITLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFKQLEELAEKAGVEH 246

Query: 268 L--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +            L++V        +T+ +   +      +PG   V N L   G    +
Sbjct: 247 IATFGENARSDYRLREVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAVLGAADLV 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMI----LKNIRT 378
           G D A V+  +  L    GR          G    +D  Y     S+             
Sbjct: 307 GADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSLLHSTTPE 366

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-----DDNPRSED--PEKIRAE 431
            + GR I V G   +  +    +   +A  + D  + T      D    ++  P +I+ E
Sbjct: 367 GSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNTLFIGGPDMSALKNALPVEIQTE 426

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +            I+ +   DV++V
Sbjct: 427 YRQSTDELLP---------LVIKAVRPGDVIMV 450


>gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42]
 gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42]
          Length = 456

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 82/480 (17%), Positives = 172/480 (35%), Gaps = 37/480 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +    + + +   +   ++ +  I   ++D+R ++   +F+ + G   +GH F+PQA
Sbjct: 1   MIKRTVKRIADMVKGTLTNPEFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G  A++                   +++VD+T + L   A     +    ++ VTG+
Sbjct: 61  FEKGVSAVLWDR------SEPNPPEGRAVILVDDTLEALQTLAKAYLKELGTRVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +           G  +          L  P    +A            
Sbjct: 115 NGKTTTKDMLHAVLGTQYRVHKTAGNFNNH-IGLPLTVLAMPEDTEIA------------ 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G         +  A   TN+G  H+    +++    AK+      L ++  
Sbjct: 162 VLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKL-EIINGLREDGV 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
              + D+     ++++                 + LK++          I    + F   
Sbjct: 221 LFYFGDEP----LLRQKTYTCRTTTYGAGADNDLRLKEIKQAEEGTYFNIDGIDRSFF-- 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   V NA+ A    I  GI        L +L V   R E V T +    +   Y 
Sbjct: 275 IPVLGRHNVMNAMAAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYN 334

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S++  ++ I T+    + ++V G     GD ++      G          + T   
Sbjct: 335 ASPTSMKAAVELIETMKGYRKKMLVLGDMLELGDEEKAFHEECGAAVNPAEIDHVFTYGT 394

Query: 420 PRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVTN 477
             +   +  R     G +  +++K   + AI+   EM    D+L+  A +G +   IV +
Sbjct: 395 LGAFIADGARRHFEEGRVSHYLDKKELLHAIQ---EMAASGDLLLFKASRGMKLEEIVKD 451


>gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri
           ATCC 33323]
 gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
 gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
          Length = 455

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 142/418 (33%), Gaps = 35/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +    +  +       ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLWKKGHEGK------PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             PS              
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVHKTQANFNNEIGVPVTILEMKPS-------------T 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  + ++      T +G  HI++  T+    +AKM + + L   
Sbjct: 155 EILVLEMGMDRPGQLHHLSELVRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + +++       +  S     +   +            T  +   + 
Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQDKSTFGFREEDTVFATTFRSYMHHATFEINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++   +     +  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            Y     +++ +  +   +     GR I V G   +       +   +A  L D AI+
Sbjct: 330 VYNSNPTAVKAVTTSFGQVMVQDGGRRIAVLGDMLELGDESAELHASLANAL-DPAII 386


>gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
 gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
          Length = 487

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 93/480 (19%), Positives = 183/480 (38%), Gaps = 32/480 (6%)

Query: 10  DFPELINQLSIFPM-----QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
              E+   LS+ P      Q  +++I  V +DSR ++ G +F+A  G + D H F+P+A+
Sbjct: 14  TVEEICEVLSVRPPAGVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVPKAL 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTGT 123
           AQGA   +V   Y L    A  R+  P+L+ V +T +     A+    + P  ++A+TG+
Sbjct: 74  AQGAVCAIVQEDYRLP--PAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITGS 131

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V Q+  +   +    G          +NR+  P  ++        +   + 
Sbjct: 132 NGKTTTKEMVAQVVAQRWKTLKTEGNL--------NNRIGVPQTLFQLAPRHQAAVIEMG 183

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 ++   +  R        G  TN+G DH+++  + +    AK  L  + LP++  
Sbjct: 184 VDQQGQTTRLCEIAR-----PTIGVITNIGPDHLEFFGSMEGSAQAKAEL-LDHLPQDGA 237

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDF 302
            ++ ADD Y   +  RA                    +V         + +  + +  + 
Sbjct: 238 VVLNADDEYFDYLAARAQCRVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPGKSRQTEI 297

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                G+  V NAL AA +   +G+    + E L K      R +   ++         Y
Sbjct: 298 RIRAQGQHNVSNALAAAAVGYVLGLSGTAIAEGLAKFRPAAMRSQISLSHGVQVINDC-Y 356

Query: 363 AHTSNSLEMILKNIRTITSGRIIV-----VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                S++  ++ +  +  G+  +     +   G D  +  R +   +A       +   
Sbjct: 357 NANPASMKAAVQLLAELGRGKRSIAALGDMLELGTDSKRMHREVGAFLAAQGIGHLLACG 416

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHETVHIVT 476
              R  +  +   +         E  +   A      M+ + DV++V A +G     +V 
Sbjct: 417 VLGR--ELAEGARQAGMASDRITELPDAPAAAAALARMVRQGDVVLVKASRGMRMEQVVE 474


>gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
 gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
          Length = 454

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 143/424 (33%), Gaps = 32/424 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR IQ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLGLPMPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +A GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 55  EDVLAAGATAVVVSREDCAALKGA--------LKVDDTLAALQKLAKAWRENVNPFVFGI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  + +        +      ++           P+ L K        
Sbjct: 107 TGSSGKTTVKEMLAGVLRHRFGDEAVLATAGNFNNHI-------GLPLTLLKLNEKHRYA 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +           L   R+ G         N  R H+                  E L  
Sbjct: 160 VIEMGMNHFGELSL-LTRIAG--PNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLS 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  +DA              +  + G     +H + +          +    +  
Sbjct: 217 DGVALIPCEDANIATFEAATVQLNIQ--TFGIASGDVHAENIELKPLSCTFDLVRGNERV 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + P+PG   V+NA+ AA L +A G+  A V + L+    + GR            I  
Sbjct: 275 AVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFSNIKGRLNIKQGIKGATLIDD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIV 415
            Y    +S++  +  +  + + R I V G  G+  + +   M       A     + A  
Sbjct: 335 TYNANPDSMKAAIDVLAAMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYF 393

Query: 416 TDDN 419
             DN
Sbjct: 394 VGDN 397


>gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
 gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
          Length = 452

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 157/410 (38%), Gaps = 29/410 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   E+        +   +  +N+V++D+R + AG +FVA+VG + D H F  +AIA GA
Sbjct: 7   KTLAEITGGT----LHGSDFTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEAIANGA 62

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A++VS           +    P +VV++TR       + +  +    ++A+TG+SGK+S
Sbjct: 63  QALLVSK---------HLPVAVPQVVVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKTS 113

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V      I ++ G + +  G  +            T                    + + 
Sbjct: 114 VKEMTAAILRQCGETLYTAGNLNNDYGVPMTLLRLTAE-------------HQYAVIELG 160

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A+  G   +  D +K  +    NL   H++   +      A      + LP    AI+  
Sbjct: 161 ANHQGEIAYTTDLVKPESALVNNLAAAHLEGFGSLAGVAKA-KGEIFQGLPAHGIAILND 219

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +            +      S          + +    +     ++      + + PLPG
Sbjct: 220 ESNDWLNWQNTLQDKTVWRFSPQAGECDFSARDIRIAQDGTHFVMNTPRGTAEIVLPLPG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL AA L +++    + V + L+ L  VPGR   V  ++    +   Y     S
Sbjct: 280 RHNIANALAAAALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSAHQLLLDDSYNANVGS 339

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +   ++ +  +   +++V       G+  +     +G+ A +     ++T
Sbjct: 340 MTAAVQVLSEMPGYQVLVAGDMAELGEETEKCHREIGEAAREAGLDRVLT 389


>gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SS3/4]
          Length = 462

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 149/463 (32%), Gaps = 37/463 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++    +         +N++  DSR ++ G +FV I+G K D H F+ Q   +GA A++ 
Sbjct: 10  VLATGGVLLSGDDGVMLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGAGAVLT 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S     +       ++   + VD+T+K L      L  +    I+ VTG+ GK++    +
Sbjct: 70  SE--HKEKTEEMAETSCAWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTREMI 127

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                         G +++           T                 V  + +  S  G
Sbjct: 128 AAALSARFHVYKTPGNSNSQVGVPITVSEITKE-------------DEVGVLELGMSEPG 174

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                    K      TN+G  HI+   +++  +  K+ + + L       +   DD   
Sbjct: 175 ELTVIARIAKPDVAVITNIGITHIEQLGSRENIYREKLTIQDGLSDGGILILNGDDD--- 231

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                R       V     +        +  +  K + T    GK    L  + G   V 
Sbjct: 232 MLCRTRGKVGVKTVYYGTGETCDYRAVDLVLMDGKTEFTAVHAGKTQKVLLNVMGTHNVM 291

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +C   G+      E L   H    R +              Y  +  S++  L
Sbjct: 292 NALAAIAVCCERGMTMEEAAEGLLTFHGFKHRQQVYADGRFTVM-DDSYNASPASMKAAL 350

Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
              + +T  R I V       G         +G+ A +     +VT          +   
Sbjct: 351 DVFQGLTGKRHIAVLADMKELGGNYLAYHREVGEYAANSGVDLVVT--------LGEACR 402

Query: 431 EIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVVAGKG 468
            +  G+    E       +  E ++     +   D ++   KG
Sbjct: 403 SLAEGVRAVKEIPVVEFSDCGEMVKYLEAEIRDGDCVLF--KG 443


>gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
 gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
          Length = 464

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 159/468 (33%), Gaps = 30/468 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++   L+   +   E  +   S+D+R      +F A+ G   D H ++  A+A
Sbjct: 1   MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCVAVVVERECEI---------DVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          +
Sbjct: 112 KTTVKEMTAKILQKM---------TACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   +      AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIV 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  +  R   +   + S          + V    +  + T+     +    
Sbjct: 223 NLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAID 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G+  V NAL A  L +++G     V   LE+  +V GR   V  N     I   Y 
Sbjct: 283 LPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHCLFIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
              +S++  +  +    + RI  V      G+        +   A + A   IV      
Sbjct: 343 ANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIV----SF 398

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAGKG 468
            ++   I  +  H      +  + +   I   IE      ++++A KG
Sbjct: 399 GKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQP--LVLLA-KG 443


>gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Lens]
 gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Lens]
          Length = 445

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 131/368 (35%), Gaps = 27/368 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I  VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+            
Sbjct: 17  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLIDGVH----- 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P  VV +    L+  A+    +    I+A+TG++GK++V   +         S   
Sbjct: 72  ---IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMI--ATILPQPSHAT 126

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G          +N +  P        L+           + A+  G   H +  ++   
Sbjct: 127 KGNL--------NNHIGVPLS-----MLALNKQHRYAVFELGANHPGEIAHTVGIVQPDV 173

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H++   +      A+ +         +   I  DD                
Sbjct: 174 SLINNIAPAHVEGFGSIDGV--ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKI 231

Query: 267 VLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +         I+ + +    H +   T+ +     +    +PG   V NAL AA  C A+
Sbjct: 232 LRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAV 291

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    +   L     V GR   +   ++   I   Y     S+   L+ +     GR I
Sbjct: 292 GISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RPGRKI 350

Query: 386 VVFGCGGD 393
            VFG  G+
Sbjct: 351 FVFGDMGE 358


>gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 452

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 175/468 (37%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + LS    +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLSA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 452

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 95/468 (20%), Positives = 174/468 (37%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
 gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
          Length = 487

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 97/494 (19%), Positives = 168/494 (34%), Gaps = 51/494 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +L+Y   P    Q+   P  W +R+I  V  DSR +  G +FVA+ G + DGHL++P
Sbjct: 3   RLDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLYLP 62

Query: 62  QAIAQGAEAIVVSSAY---------------------SLQDFSATIRSNTPILVVDNTRK 100
             + +GA A +VS A                           +         + VD+   
Sbjct: 63  DVVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDPLC 122

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            L   A          ++ +TG+ GK+S    V  +  +   +          S  + ++
Sbjct: 123 ALQRAAVYHRRMFTPTVIGITGSVGKTSTKEVVAAVISQRLRT--------LKSQRSFNS 174

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHID 218
            +T P+ +          +       +E       + R      +   G  TN+G  H++
Sbjct: 175 DITLPATL-------LGLTADHQVAVLEMGMWAAGEIRFLAALARPHIGIVTNVGPSHLE 227

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              + +A  NAK  L E L P     +    D      M +   A               
Sbjct: 228 RLGSIEAIANAKAELPESLPPDGWCIL--NADDPRVAAMAKRTPAHVVTYGFAPHADVRA 285

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++ +       ++T+S +G+      PL G    Y  L A    + +G+D   +      
Sbjct: 286 VEVISHGLYGIELTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALVVGLDWEAI---AAG 342

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCG---GDR 394
           L     R      N + G   +D  + +  L  I    +   T GR I V G     G  
Sbjct: 343 LRDPGERLRLRVVNGQQGVTIIDDTYNAAPLSTIAALEVLAETPGRRIAVLGEMLELGSA 402

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            +     +G  A   AD+ +      +++                I   +   AI     
Sbjct: 403 TEEGHRQVGAAAARTADLLV--AVGRQAQTVAAAARAAGMAEAQVIVCADNDAAIDRLRS 460

Query: 455 MLNKQDVLVVAGKG 468
           ++   D L+V  KG
Sbjct: 461 LIQAGDCLLV--KG 472


>gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
 gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
          Length = 473

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 175/466 (37%), Gaps = 41/466 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI  +  + +       + +S DSR +  G IF  I G+  DGH F  QA  +GA  ++V
Sbjct: 10  LITAIDGYAIGEIPETFSGISIDSRTLIEGDIFFCIKGHHLDGHDFAVQAYERGAAVLIV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +    +   + + P++VV +  + L   A     +    I+AVTG+ GK++    +
Sbjct: 70  ----AENRLADMEKISAPLIVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKTTTKEVL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +Q+    G         +               P+ LA+           +   E   + 
Sbjct: 126 KQVLATVGKVHANSASLNNHWGV----------PLTLARM-----PVESNYGVFEIGMNH 170

Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            D+ R  +  +       T++   H+ + +  +   +AK  +FE  L +E  A++ ADD 
Sbjct: 171 KDEIRPLVKLVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEG-LDEEGIAVLNADDD 229

Query: 252 YSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++++A     + +      +      K +  + +   + +S+ G+D       PG 
Sbjct: 230 FFPYLVQKAKQCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMKIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--GGRIYVD--YAHT 365
             + N+L     C AIG+D   VL  L       GR      +    G    +D  Y   
Sbjct: 290 HIIQNSLAVIAACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNAN 349

Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD 418
             S+   L           GR I + G   +     ++  R ++  + L  A+   +   
Sbjct: 350 PASMRAALDLLAIGPVGVEGRRIAILGDMLELGAYSEKLHRDLVKPVYLSGANPVFL--- 406

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  + +  ++   +       N  + +   +  ++  D+L++
Sbjct: 407 --FGEAMKFLATDLAAYV-KVHYAENIEKILPLILAEISNGDLLMI 449


>gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrospira platensis str. Paraca]
          Length = 465

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 142/469 (30%), Gaps = 43/469 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +    L     +         +  +++D+R++Q G +FVA+ G++ DGH F+  AIA+
Sbjct: 7   LTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAK 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA   VVS  +++           P++ V +T +     A     + P  ++ VTG+ GK
Sbjct: 67  GALCAVVSREFAVSHPE------FPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +    G      G          +N +  P  +   ++    +      + 
Sbjct: 121 TTTKELISAVLSHHGKVHKTFGN--------YNNEIGVPKTLLELRSDHDFA-----VIE 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G         +   G   N+G  HI    ++ A   AK  L  E+       + 
Sbjct: 168 MAMRGPGEIADLTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLN 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           + +        +            G       L+     H   +V               
Sbjct: 228 HDNRRLMSTATQVWAGTTITYGLEGGI-----LQGELLGHETIRVEGIDLPLPLPGSHNA 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                    L A         +    +     L +  GR +          +   Y    
Sbjct: 283 SNFLAALAVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGL 342

Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRS 422
            S    LK +      R I V G     G+R       +G     L  D   +  D    
Sbjct: 343 ESTLAALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILAD---- 398

Query: 423 EDPEKIRAEIIHGIPGF--IEKGNRI--EA----IRTAIEMLNKQDVLV 463
                    +  G  G   I+  +    +A    I   +  L   D ++
Sbjct: 399 ---LAEAQAMAEGAVGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVL 444


>gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
          Length = 473

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 93/460 (20%), Positives = 149/460 (32%), Gaps = 40/460 (8%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +    +  +   ER +   V +DSR +  G +FVAI G + DGH F  QA++ GA A++ 
Sbjct: 12  LAGGGLADVPDPERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAEQAVSAGAVAVLA 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASF 132
                            P ++VD+T + L   A       P+  ++ +TG+SGK+S    
Sbjct: 72  DHPV-----------GVPAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSSGKTSTKDL 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
             Q+  R G +    G  +T                +L    S      + ++   A   
Sbjct: 121 GAQVLARLGPTVAPTGSLNTEVGLPLTVLRADRDTRFLVLEKSARGVGHIAYLCRIAP-- 178

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                         G   N+G  H+    +++A   AK  L E  LP +  A++ ADD  
Sbjct: 179 -----------PRIGVVLNVGSAHLGEFGSREAIAQAKGELVEA-LPADGTAVLNADDPL 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              +  R         +              A           +G        + G   V
Sbjct: 227 VLGMRHRTRARVVTFGTSADADVRATEIMTDATARPSFRLCFPDGAGLPVALQMHGVHHV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
            NAL  A +   +G+ +  +   L +       R E    +     I   Y     S+  
Sbjct: 287 SNALAVATVAWVLGLGAEEIAAALREARPLSRWRMEVTTRDDGVTVINDAYNANPESMTA 346

Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEK 427
            L  +   T+ R I V G     G         +G+ A     D  IV        D   
Sbjct: 347 ALTALAAATAARRIAVLGPMAELGPAAPAAHAEVGETAARVGVDWLIVV-----GADATP 401

Query: 428 IRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      G           +   A       L   DV+V+
Sbjct: 402 IADGARRGGLAAEAVTVVPDAAAATALLTPALRAGDVVVI 441


>gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 477

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 91/448 (20%), Positives = 154/448 (34%), Gaps = 38/448 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I  G  F AI G++ DGH +   A+A GA  +VVS A       A  R  
Sbjct: 26  ITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++    L         +    I+AVTG+ GK++    ++ +   SG     +  
Sbjct: 82  VPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+              V  +  G  +  ++ I+      
Sbjct: 142 FNNHWGV----------PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVEMIRPHVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   +  +    AK  +FE L P     +   +D ++             + S
Sbjct: 189 TTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGIEHIHS 248

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   K    L +         + +++ G+  +     PG     NAL A G+   +G D
Sbjct: 249 FGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 308

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMIL---KNIRTITSG 382
               +  L  L    GR +    +   G    +D  Y     S+   +         + G
Sbjct: 309 MEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASMRAAIALLAASEPTSRG 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALD-LADIAI--VTDDNPRSEDPEKIRAEIIHGIPGF 439
           R I V G            MG+ A     D+ +  +              A +   +P  
Sbjct: 369 RRIAVLGDML--------EMGEYAQKVHTDLVVPLLAAGIEHVWLAGAEMAALKESLPES 420

Query: 440 IEKGNRI---EAIRTAIEMLNKQDVLVV 464
           +    R    E     +  +   DVL+V
Sbjct: 421 VHVEYRENTGELTDYVLNSVAPGDVLMV 448


>gi|259047320|ref|ZP_05737721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036016|gb|EEW37271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 461

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 70/464 (15%), Positives = 165/464 (35%), Gaps = 32/464 (6%)

Query: 9   KDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
               E+   +     Q   R   I  V+ D+R +    +FV + G + DGH +I QAI  
Sbjct: 4   GTVAEITKAVGAIDYQSAHRFETIESVAFDTRKLGPNSLFVPLKG-QTDGHDYIEQAIQA 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++            T       + V++  +     A     K    ++ +TG+SGK
Sbjct: 63  GATAVLWGKK------DLTPPEGICAIWVEDPLEAFQKLAKWYLEKVSPRVVGITGSSGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++                   G  +          L  P                   + 
Sbjct: 117 TTTKDMTAAALGARYRVYKTQGNFNND-IGLPQTILDMPESTE------------ALVLE 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S+    +      +    + T +G  H++   +++    AK+ +   L  K +    
Sbjct: 164 MGMSNFHEIEFLSKLARPEVVAITLIGESHMEQLGSKEGIAKAKLEILSGLQEKGTFIYP 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +D  +  + +    A  ++++VG   K +  K +    +     +    +      P+
Sbjct: 224 AHEDLITAGIAQAEKPATFKIVTVGEGSKELSTKNIELYSDHTAFELVTPTETVAVTLPV 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G + V NAL+A  +   + +  + ++  L    +   R ++V   +    +   Y  + 
Sbjct: 284 LGAYNVSNALLAIEIARTLEVPLSDIVSALANFELTKNRTQWVKGQNGVAILNDAYNASP 343

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            +++ ++++  ++  +GR ++V G     G+  +     + ++    +++A+V       
Sbjct: 344 IAMKSVIQSFVSVEATGRRVLVLGDIRELGEHSKELHASISEVISP-SEVALV---YLYG 399

Query: 423 EDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E+ E +   +     I       ++   I      L + D +++
Sbjct: 400 EEMEALYDALKDQFEIAALHHYMDKEALIADLKAELKEGDQVLI 443


>gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
 gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
          Length = 437

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 141/442 (31%), Gaps = 43/442 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +   + +    L   L   P     + I  + +D+R +Q G IF+A+ G K DGH F+
Sbjct: 1   MTVTATLSQLAAVLSASLLNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA+GA A +V               N P++ V NT       A    G+    ++ V
Sbjct: 61  EMAIARGAVAAIVD--------YTYDYPNLPVIKVSNTLNAYQELAKWWRGQFGIPVIGV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +    G      G          +N +  P  +          S+
Sbjct: 113 TGSVGKTTTKELIASVLGTRGKVHKTYGN--------FNNEIGVPKTL-------LELSE 157

Query: 181 GVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           G     +E +  G  Q   L  I                     +             +P
Sbjct: 158 GDDFAVIEMAMRGRGQIGELTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAEMP 217

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +S A++  D+       K+  +                L               +E   
Sbjct: 218 NDSVAVLNYDNPLLMTTAKQVWSGEVISYGFSGGDIQGKLVDYQ----------KIEVGG 267

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                PL G     N L A  +   + +D   +LE    + +  GR +          + 
Sbjct: 268 MTLPLPLTGVHNGSNFLAALAVAKVLDVDW-KLLEAGINVTMPQGRSQSWKLPKDIMILD 326

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIV 415
             Y     ++   L+ +      R I V G     G+R       +G+    L  D  +V
Sbjct: 327 ETYNAAPEAMLAALELLAQTPGRRKIAVLGAMKELGERSAKLHQQVGETVRKLNLDGLLV 386

Query: 416 TDDNPRSEDPEKIRAEIIHGIP 437
             D P +E    I A    GIP
Sbjct: 387 LVDGPDAE----IIATSAQGIP 404


>gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
 gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
          Length = 472

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 89/470 (18%), Positives = 180/470 (38%), Gaps = 41/470 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  ELI  +    +       + VS DSR +  G IF  I G+  DGH F  QA A+GA 
Sbjct: 6   NKQELITAIDGVVIGNIPETFHGVSIDSRALAEGDIFFCIKGHHLDGHDFALQAYARGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V    +        + + P++VV +  + L         +    I+A+TG+ GK++ 
Sbjct: 66  VLIV----AEHRLRDMEKISAPLIVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q+   +G     +   +               P+ LA+           +   E 
Sbjct: 122 KEALKQVLATAGNVHANLASLNNCWGV----------PLTLARM-----PVESDYGIFEI 166

Query: 190 SSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +  D+ R  +  +       T++   H+ + +  +    AK  +FE  L +E  AI+ 
Sbjct: 167 GMNHKDEIRPLVKLVCPHVALITHICAGHMGFFKDLEEIAEAKAEIFEG-LDEEGIAILN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           AD A+   ++++A   G + +      +      + +  + N   + + + G+D +    
Sbjct: 226 ADSAFFSYLVQKAKQCGVKKILSFGETENADYQARDIRLLTNHSSMIVRIGGQDREVQIG 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYVD-- 361
            PG   V N+L     C A+G+D   ++  L       GR        ++ G    +D  
Sbjct: 286 APGRHIVQNSLGVIAACDAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDES 345

Query: 362 YAHTSNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAI 414
           Y     S+   L+          GR I V G   +     ++  R ++  I L  A+   
Sbjct: 346 YNANPASMRAALELLATGPVGEKGRRIAVLGDMLELGEYSEKLHRDLIKPIRLSGANPVF 405

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       E  + + +++   +       N  + +   +  ++  D+L++
Sbjct: 406 L-----FGEAMKSLVSDLSADV-KVHYAENIEKILPLLLTEISPGDLLMI 449


>gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
 gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
          Length = 460

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 153/417 (36%), Gaps = 32/417 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L             +   Q    +IN V +DSR I  G +F+A+ G K D H F  
Sbjct: 8   QLSRLTEGTL------YHVTEQQAAALQINTVKTDSRKIVCGGLFIALKGEKFDAHDFAA 61

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + QGA A++VS    +         + P +VV +TR  +   A  +  +    ++A+T
Sbjct: 62  DVVKQGAGALLVSRRLDI---------DCPQVVVKDTRLAMGKLAGWVRQQSKARVVALT 112

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK+SV      I ++ G + +  G  +               P+ L           
Sbjct: 113 GSSGKTSVKEMTAAILRQCGNTLYTAGNFN----------NDIGVPLTLF---RLTEEHQ 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK- 240
              + + A+  G   +     +  +    NL   H++   +      AK  +F  L P+ 
Sbjct: 160 FAVIELGANHIGEIAYTTAMTRPESALVNNLFSAHLEGFGSLAGVAKAKGEIFAGLAPEG 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +   + ++D  + +   R              G   +   +          +       
Sbjct: 220 TAIINLDSNDWGNWQHGIREQQRVWHFSVTPAAGADFYATDIVEQPLATHFCLHTPIGKI 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + + PLPG   V NAL A+ L I++G     +   L  L  VPGR   +  ++    +  
Sbjct: 280 ELILPLPGRHNVANALAASALAISVGASLEDICAGLSALKAVPGRLFPIHLSAGKTVLDD 339

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK-IALDLADIAI 414
            Y   + S+      +  ++  R++VV   G  G +       +GK +A    D   
Sbjct: 340 TYNANTGSMIAAANVLSQMSGYRVMVVGDMGELGKQAAECHREVGKAVATTNIDKVF 396


>gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
 gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
          Length = 457

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 78/465 (16%), Positives = 156/465 (33%), Gaps = 43/465 (9%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L+     +++   ++  P +  E+    +++D+R+++ G +F+A+ G K DGH +   A+
Sbjct: 5   LLVGKLVDILAAKTVGIPEKILEKSFTGITTDTRNLEPGQLFLALRGEKFDGHNYAALAV 64

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA  ++  +       +A+     P++ V+NT K     A     +    ++AVTG+ 
Sbjct: 65  EKGALTVIAEA------TNASQLEGLPLIQVENTLKAYQQIARWWRDQFQIPVIAVTGSV 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +    G         +      +     TP                   
Sbjct: 119 GKTTTKELIAAVLSTKGTVLKTQANYNNEIGVPKTLLELTPD-------------HDYAV 165

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G      +      G  TN+G  HI    + +A   AK  L   +       
Sbjct: 166 IEMAMRGSGQIAELTEIANPTVGVITNVGTAHIGLLGSTEAIAKAKCELLAHMSNNGVAV 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + + +        +            G   +   +                + +  +F  
Sbjct: 226 LNHDNQRLIDTAAQVWQGQTLTYGLEGGDVQGQLIAPEIL-----------KVEGMEFPI 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG     N L A  +   +G+D   +   L  + + PGR +     +    +   Y  
Sbjct: 275 PLPGRHNALNYLAALAIGKLLGVDWETLRNGL-NVELPPGRSQRYELPNDVVILDETYNA 333

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNP 420
              S+   L+ +      R I V G     G +       +G+    L  D   +  D  
Sbjct: 334 GVESMVAALEMLAQTPGKRHIAVLGAMKELGTQSGELHQQVGQKVEQLNLDGLRILVDES 393

Query: 421 RSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQDVLV 463
              DPE     I  G+     +   +    +   +E +   D L+
Sbjct: 394 ---DPE--AEAIATGVTSVPVESFCDSNPLVEHLLEFVQPGDRLL 433


>gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
 gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
          Length = 455

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 144/424 (33%), Gaps = 32/424 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P+    + ++ + +DSR IQ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLGLPVPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +A GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 55  EDVLAAGATAVVVSREDCAALKGA--------LKVDDTLAALQKLAKAWRENVNPFVFGI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  + +    +   +      ++           P+ L          
Sbjct: 107 TGSSGKTTVKEMLACVLRHRFGNEAVLATAGNFNNHI-------GLPLTLL---KLNEKH 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             + + +  +  G                 N  R H+                  E L  
Sbjct: 157 RYSVIEMGMNHFGELSLLTQIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLS 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  +DA              +  + G     +H + +       +  +    +  
Sbjct: 217 DGIALIPCEDANIATFEAATAQLNAQ--TFGVASGDVHAENIELKPLSCEFDLVRGNERV 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + P+PG   V+NA+ AA L +A G+  A V + L+    + GR            I  
Sbjct: 275 AVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGLKNFSNIKGRLNIKQGIKGATLIDD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIV 415
            Y    +S++  +  +  + + R I V G  G+  + +   M       A     + A  
Sbjct: 335 TYNANPDSMKAAIDVLAAMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYF 393

Query: 416 TDDN 419
             DN
Sbjct: 394 VGDN 397


>gi|325473282|gb|EGC76477.1| hypothetical protein HMPREF9353_02272 [Treponema denticola F0402]
          Length = 268

 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 298 KDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K++     L G F V N L     +    G+D A ++E L  +  V GR   +    +  
Sbjct: 59  KEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEKLPLVKPVKGRMMLI-DEGQDF 117

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            + +DYAHT +S   I  +I+       G++I +FG GG+RD  KRP  G+IA   +DI 
Sbjct: 118 EVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGSGGERDVKKRPEQGRIAALYSDIV 177

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           I+ D++PR ED  ++   I  G P            +R  AI+ A  +  K D +++ GK
Sbjct: 178 ILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIPDRPSAIKKAFSLAGKNDAVLLLGK 237

Query: 468 GHETVHIVTNGEKKMSVDCDIIREILGLIL 497
           GHE   I  +       +    R++L  +L
Sbjct: 238 GHENSIIFKD-RTMPYDEETTARKLLKTLL 266


>gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
 gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
          Length = 458

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 163/473 (34%), Gaps = 46/473 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + +L+         Q S F +   +  I  +++D+R IQ G +F+A+ G   DGHLFI
Sbjct: 1   MNVNELVTVLGSNFQKQKSYFNLSSFD-DIKVINTDTREIQKGDVFIALSGKNFDGHLFI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI +GA  +++                   +VV +  K     A+    K+   I+A+
Sbjct: 60  REAIEKGASIVILEQEA-----LVNSTYKVSHIVVGSALKAYQQIANWWRNKYKIPIIAI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +       G                 +N +  P  +          S+
Sbjct: 115 TGSVGKTTTKELIAASLGMYGQVHKTYDN--------YNNEIGVPRTL-------LKLSK 159

Query: 181 GVTHVSVEASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +  +E     L++ RL    I+   G  TN+G  HI    +++A   A        +
Sbjct: 160 HHDYAVIEMGMRDLEEIRLLTKIIQPTIGIITNIGTAHIGRLGSKEAIAQA-KCELLSEM 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +S AI+  DD    +   R          +        L              ++  +
Sbjct: 219 SLDSIAILNNDDELLMKTAMRIWKGKTITYGLNKGDIIGKLINDR----------TLRVE 268

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +F  PL G     N L A  +  ++ +D         K+ +  GR +          +
Sbjct: 269 GLNFPLPLSGRHNAINYLAALAVTKSLNLDWKKFT-KQIKVEMPQGRSQKNYLPGDIILL 327

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414
              Y     S++  L  ++     R I V G     G         +G+ A  L  D+  
Sbjct: 328 DETYNAGLESMKAALNMLKDTPGKRHIAVLGAMKELGVNSSQFHREVGETAQALGIDVLY 387

Query: 415 VTDDNPRSEDPEKIRAEII--HGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
           +     R E+   I   I    G+         +  +     I  +++ D ++
Sbjct: 388 ILI---RDEEARAIPNGIKNIDGVRNIKVICCLSPEKLFEQLINDISEGDRIL 437


>gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Arthrospira platensis NIES-39]
          Length = 468

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 142/469 (30%), Gaps = 43/469 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +    L     +         +  +++D+R++Q G +FVA+ G++ DGH F+  AIA+
Sbjct: 7   LTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFVAAAIAK 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA   VVS  +++           P++ V +T +     A     + P  ++ VTG+ GK
Sbjct: 67  GALCAVVSREFAVSHPE------FPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSVGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +    G      G          +N +  P  +   ++    +      + 
Sbjct: 121 TTTKELISAVLSHHGKVHKTFGN--------YNNEIGVPKTLLELRSDHDFA-----VIE 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G         +   G   N+G  HI    ++ A   AK  L  E+       + 
Sbjct: 168 MAMRGPGEIADLTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLN 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           + +        +            G       L+     H   +V               
Sbjct: 228 HDNRRLMSTATQVWAGTTITYGLEGGI-----LQGELLGHETIRVEGIDLPLPLPGSHNA 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                    L A         +    +     L +  GR +          +   Y    
Sbjct: 283 SNFLAALAVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGL 342

Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRS 422
            S    LK +      R I V G     G+R       +G     L  D   +  D    
Sbjct: 343 ESTLAALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILAD---- 398

Query: 423 EDPEKIRAEIIHGI--PGFIEKGNRI--EA----IRTAIEMLNKQDVLV 463
                    +  G     FI+  +    +A    I   +  L   D ++
Sbjct: 399 ---LAEAQAMAEGAMGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVL 444


>gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 325

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 89/329 (27%), Positives = 151/329 (45%), Gaps = 9/329 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           ++   +FP   R+  I E++ DS  ++   +F+ + G  +DG   I  A+ +GA A+   
Sbjct: 3   MSLSQLFPQAERDLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYE 62

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASF 132
           +  + +       S+ P++ V      LS  A R YG+     +++ VTGT+GK+SV+  
Sbjct: 63  AEGAGELPP----SDAPLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQL 118

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDN-RLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           V Q     G     +G   T    A ++ R TTP P+ +   L+ L   G   V++E SS
Sbjct: 119 VAQALDLLGERCGIVGTLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSS 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           HGLDQ R+  +      FTNL RDH+DYH + +AY  AK +LF     +     +  DD 
Sbjct: 179 HGLDQGRVAALGFDIAVFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRCRVINL--DDD 236

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + + +     ++     S+     F++ ++        +  +     +     PL G F 
Sbjct: 237 FGRRLAGEEQDSELITYSLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           + N L A G  + +G     +L  L +L 
Sbjct: 297 LSNLLAAVGALLGLGYPLGDILRTLPQLQ 325


>gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
 gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
          Length = 460

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 88/454 (19%), Positives = 165/454 (36%), Gaps = 33/454 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
            +I   Q  +  I  +S+DSR I    +F+A+ G++ D H FI     +GA A++V+   
Sbjct: 18  STITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKI 77

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            ++          P ++V +TR  +   A+ +       I+A+TG+SGK+SV      I 
Sbjct: 78  DVE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASIL 128

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  G + +  G  +            TP                   + + A+  G   +
Sbjct: 129 RHCGETLYTHGNLNNDIGVPLTLFRLTPE-------------HRFAVIELGANHIGEIAY 175

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256
            +D +K  +    NL   HI+   + Q    AK  +F        +     ++D    + 
Sbjct: 176 TVDMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQQ 235

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              +                 +   +         T+           PLPG   + NAL
Sbjct: 236 HFNSRQTQWSFSLSADTQADFYPTDIVVNQLTTDFTLHTPEGCVAITLPLPGRHNIANAL 295

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A+ L +++G     + + L  L  VPGR   V   +    +   Y     S+   L+ +
Sbjct: 296 AASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTGKIVLDDTYNANDGSMMAGLQVL 355

Query: 377 RTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +   +I V       G+  +     +G+ A  +    ++T  +       +  ++   
Sbjct: 356 SQLPGYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGH-----YSQFISQENE 410

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           G   F  K +    +   I +L + DV+ V  KG
Sbjct: 411 GGEHFSFKADL---LTQLIPLLQQHDVVSVLVKG 441


>gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
          Length = 457

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 101/467 (21%), Positives = 176/467 (37%), Gaps = 33/467 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+V+    S          + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGAVAVVIQQENSSI--------SIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +  SS  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAASSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++   L K   AI
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRG-LTKNGVAI 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I A+  +     K   N   +     + GK   +K V         T+     + D   P
Sbjct: 223 INAEHNHLDVWQKEISNHAIQY----FNGKDYSVKNVQGNEQGSTFTLVSSQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRS 422
            +SL   +  +++  + RI+ V      G+        +G+ +     D+          
Sbjct: 339 KDSLCAAIDVLKSYDAFRILCVADMKELGENSLAIHREVGQYVKSSNLDLVC-----SYG 393

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            +   I   ++     F +K + ++ +   IE  L +   +VV GKG
Sbjct: 394 NESAVISDAVLG--KHFTDKVDMVDFLVPLIETQLQQNKKVVVLGKG 438


>gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 454

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 145/405 (35%), Gaps = 24/405 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L   L+   +      I EV+ D+R +  G +FVA+ G + DGH F      
Sbjct: 1   MIKVSLHFLSTLLNAEYIGRDSADITEVTIDTRKVTPGCLFVALKGERFDGHDFAED--- 57

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                  V++       S  +    P LVV +TR  L   A+ +  + P  ++A+TG+SG
Sbjct: 58  ------AVAAGAGALLVSKHLLVAAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   V  I ++ G   +  G  +            TP                   +
Sbjct: 112 KTSVKEMVAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPE-------------YDFAVI 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  D  +  +    NL   H++   +      AK  +F  L    +  I
Sbjct: 159 ELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAII 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + +        +    R   +G +        V         T+           P
Sbjct: 219 NADSNDWPHWQETLHNKRVWRFAPLGAEDIDFFASDVRITPQVTHFTLHSPFGTVGIELP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G   A V E L +L  VPGR   +   +    +   Y   
Sbjct: 279 LPGRHNIANALAAAALAMSVGASLAAVREGLTQLPAVPGRLFPIELAAGKLLLDDSYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
             S+    + +  +   R++VV   G  G+        +G+ A  
Sbjct: 339 VGSMTAAAQVLAEMPGYRVMVVGDMGELGETAVDCHRQVGEAAQQ 383


>gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 452

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 95/468 (20%), Positives = 174/468 (37%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRLVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 504

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 84/489 (17%), Positives = 155/489 (31%), Gaps = 46/489 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L      E++    +      +  +   V  DSR + AG +F+A+ G + DGH +   A
Sbjct: 3   ELTLGQIVEIVGG-ELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTA 61

Query: 64  IAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNTR-------KFLSLFASRL---- 109
           I QGA A++ +    +        T   +   +   +         + LS  A  +    
Sbjct: 62  IGQGAVAVLAARPVDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVDLA 121

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G H   ++A+TG++GK+S   F+  +   +G +    G  +            T     
Sbjct: 122 VGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCT----- 176

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                   +        + A   G   H         G+  N+G  H+    ++     A
Sbjct: 177 --------THTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQA 228

Query: 230 --KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             ++            A++ ADD +   +  R         +                 +
Sbjct: 229 KGELVEALPAAADGGVAVLNADDPFVAAMAPRTTARVVTFSTANPPAPGAQYWAGDLELD 288

Query: 288 KQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVP 343
                  T+      +     + GE QV NAL AA + I  G+D   V+           
Sbjct: 289 DVARASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSHAAASA 348

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCGGDRD---- 395
            R +          I   Y    +S+   +  +    S R       V G  G+      
Sbjct: 349 HRMDVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAV 408

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           Q  R +  ++A    +  I   DNP   +   +R +            +   A+      
Sbjct: 409 QEHRALGAELAKYHVERLIAVGDNP---NCRALREQAAALGVRTDAVPDAASAVDLLRHQ 465

Query: 456 LNKQDVLVV 464
           +   DV++V
Sbjct: 466 VRDGDVVLV 474


>gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
 gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
          Length = 454

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 158/483 (32%), Gaps = 44/483 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
            L+  +  E +     +P      ++ ++S+D+R I  G +F+A+ G   DGH F  +A+
Sbjct: 3   KLMLSEIIEAVRGSYGYP---ANVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAKAM 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A+V                    L+VD+T + L   AS    K    ++ +TG+ 
Sbjct: 60  ELGAIAVVTERPVD----------GARCLIVDSTAQALLDSASYYRSKFDIPLVGITGSV 109

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +  RS  +       +      +         + L         +   +
Sbjct: 110 GKTTTKEMIYSVLSRSFKTLKTEANHNNEVGMPKTL-------LELDNTHQAAVIEMGMN 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              E S            K      TN+G  HI+   +Q+    AKM + +         
Sbjct: 163 HKGEISRMS------TSCKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLI 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +    D       +          SV  +   ++   + A       TI  + +  +   
Sbjct: 217 LC--RDDKLLAKAEIYGGRQVWYYSVSKKDCDVYASDIAADSKGISFTIHYKREKLNARI 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              GE  V NAL A     A G+++  ++  L        R   +  N     +   Y  
Sbjct: 275 NCLGEHNVKNALAAFCAGAAAGMENEDIIAGLADFRPEGMRQNIITENGMTFVLDC-YNA 333

Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQG---KRPIMGK-IALDLADIAIVTDDN 419
             +S++  L  +  I   GR   V G   +  +G       +G+ +     D+ +    N
Sbjct: 334 APDSMKASLSVLSQISVRGRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVLLCYGKN 393

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGH---ETVH 473
                   I      G          +  E +      L + D ++  G +G    E   
Sbjct: 394 STY----YIEGACDKGFDRENTKHFESHEELVEYLKANLKEGDAVLFKGSRGMKLEEVYE 449

Query: 474 IVT 476
            + 
Sbjct: 450 AIK 452


>gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
 gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
          Length = 470

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 94/466 (20%), Positives = 158/466 (33%), Gaps = 39/466 (8%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
               ++I + +  P+Q    ++  +S DSR  +   +F AI G + DGH F+ QA+ +GA
Sbjct: 7   NTISQVIQRGATNPLQEL-AEVAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGA 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A VV      +    T   +  +L VD+    L  FA     +    ++ VTG+ GK++
Sbjct: 66  AACVV------KRGEVTDPGSQLLLEVDDVNHALMQFARWYREQQSARVIGVTGSVGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +         ++     T   S    +N    P  I      + + S     V   
Sbjct: 120 TRSMI--------YTALSSCLTGIQSPANFNNEFGVPLSI------AGIESSHQFAVLEL 165

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A+SH  +   L  I L               H               E LP    AI+  
Sbjct: 166 AASHVGEIRELAAIALPQIGVITAIGHSHLEHFGTLQQIAETKGELFEQLPATGLAIVCG 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD ++  +  R      R+             +           IS       +L P+ G
Sbjct: 226 DDPFADCLASRTTARKVRIGLGENNDLQAVSIEQDQQG------ISFRVNGQQYLLPVVG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTS 366
              V  AL A  +   +GI    V E L     VPGR         G    +D  Y  + 
Sbjct: 280 RHFVNAALAAIAVARELGISEQDVAESLRNYSTVPGR---CHQMQIGDWTVIDDTYNASP 336

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +S+    + +     +G+ I+V G     G   +     +G +        +       +
Sbjct: 337 DSMRAACQVLHDHVGTGKRIMVLGDMLELGPETERYHRELGILVCQAGVDLLFACGKQAT 396

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +  R+  +      I   +         ++L   DV++V  KG
Sbjct: 397 SVAQGARSAGMSH-TKIITAADVELLAEDVTDLLEPGDVVLV--KG 439


>gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
 gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
          Length = 458

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 154/416 (37%), Gaps = 43/416 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       L+           + +   VS+D+R +Q G +FVA+ G   DGH +I
Sbjct: 1   MKLSQLKLDSAKTLVGG---------DAEFFCVSTDTRSLQPGDLFVALRGEHFDGHAYI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI +GA A+VV +               P  VV +T + L   A+    +    ++ +
Sbjct: 52  AQAIEKGACAVVVDT--------VQAEIAVPQWVVKDTVRALGFIAANKRAEFEGAVVGL 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+SV   ++ +C+++G +    G  +                I + + L  L  Q
Sbjct: 104 TGSSGKTSVKGMLEAVCRQAGPTVATAGNLNNH--------------IGVPQTLMRLEQQ 149

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V    S  G   +    I+       N+   H+    +  A   A+ +        
Sbjct: 150 AFAIVEAGTSGFGEIAYLTSLIQPEVALVNNVMPAHMAGFGSLDAI--AQEKGDIYGGSN 207

Query: 241 ESPAIIYADDAYSKEVMKRA---------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
              A+I  DD Y++E + R           +      + G                    
Sbjct: 208 LRCAVINLDDNYAQEFLARNGGITTIGFTASPIQYEKNSGVDTLIYGECLTPDGMGCYSF 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + +EG  F     +PG+  V NAL AA   +A+G+   L+ + + +   V GR + V T
Sbjct: 268 DLVLEGNRFPVNLQVPGKHSVNNALAAASCAVALGVAHELIAKGVSQFQGVAGRMQRVST 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIA 406
                 I   Y     S+      +       ++V   G  G  +  +   +G+ A
Sbjct: 328 KCCHTLINDTYNANPGSMRAAANYLAHAKHSVMVVGDMGELGSDELAQHFDLGRYA 383


>gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 528

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 84/489 (17%), Positives = 155/489 (31%), Gaps = 46/489 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L      E++    +      +  +   V  DSR + AG +F+A+ G + DGH +   A
Sbjct: 27  ELTLGQIVEIVGG-ELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYATTA 85

Query: 64  IAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNTR-------KFLSLFASRL---- 109
           I QGA A++ +    +        T   +   +   +         + LS  A  +    
Sbjct: 86  IGQGAVAVLAARPVDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSKLARHVVDLA 145

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G H   ++A+TG++GK+S   F+  +   +G +    G  +            T     
Sbjct: 146 VGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTALRCT----- 200

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                   +        + A   G   H         G+  N+G  H+    ++     A
Sbjct: 201 --------THTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQA 252

Query: 230 --KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             ++            A++ ADD +   +  R         +                 +
Sbjct: 253 KGELVEALPAAADGGVAVLNADDPFVAAMAPRTTARVVTFSTANPPAPGAQYWAGDLELD 312

Query: 288 KQ---QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVP 343
                  T+      +     + GE QV NAL AA + I  G+D   V+           
Sbjct: 313 DVARASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSHAAASA 372

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCGGDRD---- 395
            R +          I   Y    +S+   +  +    S R       V G  G+      
Sbjct: 373 HRMDVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAV 432

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           Q  R +  ++A    +  I   DNP   +   +R +            +   A+      
Sbjct: 433 QEHRALGAELAKYHVERLIAVGDNP---NCRALREQAAALGVRTDAVPDAASAVDLLRHQ 489

Query: 456 LNKQDVLVV 464
           +   DV++V
Sbjct: 490 VRDGDVVLV 498


>gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 464

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 136/394 (34%), Gaps = 20/394 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          V
Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  + +    +   + S          + V       + T+     + +  
Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   Y 
Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              +S++  +  ++   + RI  V       D+ 
Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAVGDMAELGDES 376


>gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 464

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 136/394 (34%), Gaps = 20/394 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          V
Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  + +    +   + S          + V       + T+     + +  
Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   Y 
Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              +S++  +  ++   + RI  V       D+ 
Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAVGDMAELGDES 376


>gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 464

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 132/394 (33%), Gaps = 20/394 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          V
Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPA 244
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++       ++  
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                    ++ +          +            + V       + T+     +    
Sbjct: 223 NQTFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIKIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   Y 
Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              +S++  +  ++   + RI  V       D+ 
Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAVGDMAELGDES 376


>gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis HI4320]
 gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus
           mirabilis HI4320]
          Length = 460

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 165/454 (36%), Gaps = 33/454 (7%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
            +I   Q  +  I  +S+DSR I    +F+A+ G++ D H FI     +GA A++V+   
Sbjct: 18  STITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDFIADVKQKGAVAVLVNRKI 77

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            ++          P ++V +TR  +   A+ +       I+A+TG+SGK+SV      I 
Sbjct: 78  DVE---------CPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGSSGKTSVKEMTASIL 128

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +  G + +  G  +            TP                   + + A+  G   +
Sbjct: 129 RHCGETLYTHGNLNNDIGVPLTLFRLTPE-------------HRFAVIELGANHIGEIAY 175

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEV 256
            ++ +K  +    NL   HI+   + Q    AK  +F        +     ++D    + 
Sbjct: 176 TVNMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQQ 235

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              +                 +   +         T+           PLPG   + NAL
Sbjct: 236 HFNSRQTQWSFSLSADSQADFYPTNIVVNQLTTDFTLHTPEGGVAITLPLPGRHNIANAL 295

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A+ L +++G     + + L  L  VPGR   V   +    +   Y     S+   L+ +
Sbjct: 296 AASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTGKIVLDDTYNANDGSMIAGLQVL 355

Query: 377 RTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             +   +I V       G+  +     +G+ A  +    ++T  +       +  ++   
Sbjct: 356 SQLPGYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGH-----YSQFISQENK 410

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           G   F  K +    +   I +L + DV+ V  KG
Sbjct: 411 GGEHFSFKADL---LTQLIPLLQQHDVVSVLVKG 441


>gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 464

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 136/394 (34%), Gaps = 20/394 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          V
Sbjct: 112 KTTVKEMAAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  + +    +   + S          + V       + T+     + +  
Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   Y 
Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              +S++  +  ++   + RI  V       D+ 
Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAVGDMAELGDES 376


>gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Paris]
 gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Paris]
 gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 445

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 131/368 (35%), Gaps = 27/368 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
              I  VS D+R ++ G +F AIVG + DGH FI +A A+GA A VV+            
Sbjct: 17  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNRLIDGVH----- 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P  VV +    L+  A+    +    I+A+TG++GK++V   +         S   
Sbjct: 72  ---IPQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMI--ATILPQPSHAT 126

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G          +N +  P        L+           + A+  G   H +  ++   
Sbjct: 127 KGNL--------NNHIGVPLS-----MLALNKQHRYAVFELGANHPGEIAHTVGIVQPDV 173

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H++   +      A+ +         +   I  DD                
Sbjct: 174 SLINNIAPAHVEGFGSIDGV--ARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKI 231

Query: 267 VLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +         I+ + +    H +   T+ +     +    +PG   V NAL AA  C A+
Sbjct: 232 LRFSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAV 291

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    +   L     V GR   +   ++   I   Y     S+   L+ +     GR I
Sbjct: 292 GISGNDIQRGLAHFGGVKGRMTMLSGQNQSTVIDDTYNANLRSVLTALEVLSG-RPGRKI 350

Query: 386 VVFGCGGD 393
            VFG  G+
Sbjct: 351 FVFGDMGE 358


>gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           L20]
 gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 464

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 134/384 (34%), Gaps = 20/384 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          V
Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  + +    +   + S          + V       + T+     + +  
Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   + NAL A  L +A+G D   V   LE+   V GR   V  N     I   Y 
Sbjct: 283 LPYLGAHNISNALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEVNDHCLFIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
              +S++  +  ++   + RI  V
Sbjct: 343 ANVDSMKSAVSVLKNYPAFRIFAV 366


>gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 455

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 126/410 (30%), Gaps = 37/410 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +FV I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  +    +           +L V +T K +   A     K    ++++
Sbjct: 54  GSAIEAGASATLWEAGNPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             P               
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNEIGVPMTILEMKP-------------IT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G        ++      T +G  HI++  ++    +AKM + + L   
Sbjct: 155 EILVLEMGMDRAGQLHELSQLVRPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + ++        +  S         +               + G D 
Sbjct: 215 GEFIYN-----GDEPLLAERAAKLPQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIMGK 404
            Y     +++ +  +   +     GR I V       G R       +  
Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
 gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
          Length = 501

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 159/474 (33%), Gaps = 42/474 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++  KD                +  I  +  DSR  QAG +F+ ++GNK DGH FI  
Sbjct: 47  MKNITVKDIVNATGG--FLLCGDEDTPITGLCIDSRKAQAGDLFIPLLGNKVDGHRFIEP 104

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ + A A + S      +    + S  P + VD+T K L      + G++    + VTG
Sbjct: 105 AMER-ASATLTS------EHDNVVISEKPFIRVDDTMKALQAIGKDIRGRYDIPYIGVTG 157

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +              G  ++           T                  
Sbjct: 158 SVGKTTTREMIAAAVGTGRHCFQTNGNENSQIGVPMTLSRMT-------------DGYDA 204

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  +   D ++      T +G  HI++ +TQ+   + K+      + +  
Sbjct: 205 AVIEMGISEPGQMEILSDIVRPSICVVTMIGVAHIEFMKTQENIRDEKL-SIVNHMKENG 263

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  DD   +E+                         V       +   +  G+    
Sbjct: 264 LLLLNGDDPLLREIKDDMSCQTLTFGIDEVCDFQGS--DVQCGEQGMEFDCTHNGETVHV 321

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           +  + G+  V NAL    +   +GI  A   +  E       R   +   +R   +   Y
Sbjct: 322 VMDVLGKHNVRNALAGIAVAYQLGIPMATAAKAFEHFEGQRQR--IIRMENRYTILDDTY 379

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTD 417
             + +S++  +  +  +   G+   V       GD        +G+       D  IV  
Sbjct: 380 NASPDSMKASIDVLCDLDCKGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIVV- 438

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E    I+  +      + +     +  E     + ++  +D++++  KG
Sbjct: 439 ----GEKALDIKKALDECDTKYAKTFSFMDNEEVALYLMAIMKPEDIVLL--KG 486


>gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 150/400 (37%), Gaps = 23/400 (5%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K    L+           +   + VS+DSRH+  G +FVA+ G + D H F+PQ   +  
Sbjct: 2   KATLNLLQTAIKNATATGDAAFDGVSTDSRHVAVGNLFVALRGERFDAHAFLPQVAERKV 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A+V                N P L+V +TR  L   AS    +    ++ VTG++GK++
Sbjct: 62  AAVVAEK--------IPAGLNVPALIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGKTT 113

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  I   +      +      ++           P+ L +  +         + + 
Sbjct: 114 VKEMIAAILDAAFGPDNYLATRGNFNNDI-------GVPLTLLRLNAACK---AAVIELG 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +  G         +   G   N  R+H ++ ++ +A            LP +  A+  A
Sbjct: 164 MNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVEAVAQENG-AVLASLPADGVAVFPA 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DDA++     R++ A  + L+ G+           A      ++++   + F       G
Sbjct: 223 DDAFTPLW--RSYAAQRKTLTFGFSADADVRCTYAANVFGNDMSVTAGNQKFTIALSAAG 280

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL A    +AIGI    ++  L+    V GR +     S    I   Y    +S
Sbjct: 281 VHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVSGRLQRKLAASGALVIDDTYNANPDS 340

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
           +   +  +  + S RI+V+   G  G+  +     +G  A
Sbjct: 341 VRAAIDVLAQMASPRILVLGDMGEVGNDGRQYHEEIGAYA 380


>gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 423

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 158/414 (38%), Gaps = 27/414 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +     +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTASNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST 390


>gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
 gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
          Length = 454

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 88/467 (18%), Positives = 168/467 (35%), Gaps = 35/467 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ N +        E +I EV++D+R IQ+G +F+A+VG + D H F  QA  
Sbjct: 1   MIALTLSDIANIVEGTQSGG-EVQIQEVTTDTRAIQSGALFIALVGERFDAHDFCQQAAD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++V     +         + P ++V +++  L L  + ++ +     LA+TG+ G
Sbjct: 60  KGAAALIVERQLDI---------DIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I    G   +  G  +           +TP                 + +
Sbjct: 111 KTTVKEMVASILSGLGQVLYTAGNFNNDIGVPLTLLRSTP-------------QDDFSVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   +      AK  +++ L    +  I
Sbjct: 158 ELGANHIGEIAYTTALVKPDIAMVNNVAEAHLEGFGSLDGVKTAKGEIYQGLTANGTALI 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                  S                      F       +       T+     + +    
Sbjct: 218 NLDSQGESIWSEVLQDKNLITFSKQNTNADFYGSDIAMSSEGYPLFTLHTPIGNVELQLS 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GE  V NA+ A+ L I  G     +   L+ L  V  R +          I   Y  +
Sbjct: 278 LLGEHNVANAVAASALAIQCGATLEQIKIGLQSLSKVKRRVDVEKLTEHITLIDDSYNAS 337

Query: 366 SNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             +++  +  +     G+  ++ G     G         +G+ A   A   ++T      
Sbjct: 338 VPAMKAAVDLLAQFKQGQRWLILGNMAELGHESLALHKEVGQHAAPFAFEHVLT----YG 393

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKG 468
           ED + I +++  G+  F    + +E I    I++      L+V  KG
Sbjct: 394 EDAKVI-SDLCGGM-HFQSHDSMLEYIERNLIQLNQTSHTLLV--KG 436


>gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus helveticus H10]
          Length = 455

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/475 (15%), Positives = 147/475 (30%), Gaps = 41/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKDLNTTCEGDDKTVITSVAFDSRKITTGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VDN    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PKNITVIEVDNPLTAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H L  +     +   +  +        +           + L +
Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+   A               +            T ++   + 
Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDVGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     GR I V G   +  + K P +     D  D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGK-KSPELHAGLCDTLDPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   +          +  +      I      +   D++V+  KG
Sbjct: 389 VYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDIKPDDIIVL--KG 441


>gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
 gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
          Length = 459

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 177/473 (37%), Gaps = 41/473 (8%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++ K   E++  L   I    +R+  I  V  D+R I+ G +FV  VG   DGH F+ QA
Sbjct: 2   ILKKTVGEVVGMLDSTIHTDAFRDVVITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQA 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA A                 ++ P+++V++T   L   A +   +    ++A+TG+
Sbjct: 62  REMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQEMAKKYIQEVKPKVIAITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  I + S    +  G  +          LT P    +A     ++ +   
Sbjct: 116 NGKTTTKDIMAAIVETSYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEI 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V  + +   +               TN+G  HI+Y  +++    AK+ +   L P    
Sbjct: 175 EVLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLSPSGIL 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                   Y + ++    +   R L+ G   +            +    ++    D +  
Sbjct: 223 IY-----PYEEALLLSHIDGDFRQLTFGKSQEAEIYPLAIHAEAEGTAFVTNWEPDLEIF 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ GE  V+NA+        IGI+   + + L  +     R E++ T +    +   Y 
Sbjct: 278 VPIIGEHNVFNAMATMLAAREIGIEGEKIQKALRNMERSKSRLEWLTTKNGTRILNDAYN 337

Query: 364 HTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTD 417
            +  +L+ +LK    +     R  +V       G+  +       ++  + A +   +  
Sbjct: 338 SSPTALKTVLKTFMHMDSQGKRKYLVLADMLELGELSEQLHKESAEVLEEGAVEKVFLYG 397

Query: 418 DN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEMLNKQDVLVVAGKG 468
           +     E+  KI      G        +  E++ TA +  ++  + ++V  KG
Sbjct: 398 EAMKAFEEVAKI----KIGQRKVQHF-DTKESLETALLNEMDGNEWILV--KG 443


>gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 162/472 (34%), Gaps = 47/472 (9%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L      ELI+              + +  DSR +    +FV IVG   D H F+   
Sbjct: 14  KELAAATGGELISG-------NENEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFLEAV 66

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G +  + S           ++ +  I++VD+T K L      +  K    ++ VTG+
Sbjct: 67  YNSGCKVAISSKK------DIFLKKDFNIVLVDDTTKALQSLGKYIRKKLNLPLVGVTGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    V                 +              S + +   LS +  + + 
Sbjct: 121 VGKTTTREMVA---------------LALSDLKVFKTPNNFNSQVGVPITLSRIKDEEIG 165

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S     +     +       TN+G  HI+   T++     K  + + +  + S 
Sbjct: 166 VIELGMSKFDEMEKIAKIVNCDCALVTNIGTAHIENLFTRENIRTEKFHIMDGM-KENSV 224

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             + AD+       KR         + G +    +   +   +   +    +EGK     
Sbjct: 225 VFLNADNDLLNNSPKREGIIYKFFSAKGNKDCEYYASDIVFNNAMPEFNAHIEGKTLRVH 284

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
             + GE Q+ NAL A  +     +      +HLE       R E +     G  +  D Y
Sbjct: 285 LNVFGEHQISNALAALAVADHYNLSIESAAKHLEDFRGFSHRQELIIRG--GLTVIDDTY 342

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADI-AIVTDD 418
             + +S++  +  ++   + R I +       G+ ++     +G        + A+ T  
Sbjct: 343 NASPDSMKASISILKGFNAKRKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTV- 401

Query: 419 NPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E  ++I + I   +    F +       IR   E L   DV ++  KG
Sbjct: 402 ---GELAKEIISNINENVLTKSFEDNETLENFIR---EYLKDGDVCLL--KG 445


>gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 455

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 140/418 (33%), Gaps = 35/418 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       ++ I  V  DSR      +F+ + G + DGH F+
Sbjct: 1   MKMQ------LAEIAKALNSSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GAEA +       +     + ++ P++ V++    L   A    GK    ++ +
Sbjct: 54  SNAMANGAEATLW------KKGHEGMPTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             P    +      +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPVTILEMKP-STEILVLEMGMDHP 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H   E             ++      T +G  HI++  T+    +AKM + + L   
Sbjct: 167 GQLHHLSEL------------VRPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + +++       +  S     +   +            T  V G   
Sbjct: 215 GKFIYN-----GDEPLLEERAAKIKQEKSTFGFREEDTVFATTFRSYMHHATFEVNGSTQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G +   + + L        R ++   +     +  
Sbjct: 270 QFKIPMIGKHNVSNALAAISVGRHFGENDEQIAQALANFTPTANRMQWKKGDVGEAIMDD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            Y     +++ +  +   +     GR I V G   +       +   +A  L D AI+
Sbjct: 330 VYNSNPTAVKAVTTSFGQVMVEDGGRRIAVLGDMLELGDESADLHASLATSL-DPAII 386


>gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 415

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 158/414 (38%), Gaps = 27/414 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +     +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTASNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST 390


>gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 455

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 140/454 (30%), Gaps = 39/454 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +  +  +  V+ D R +Q G  FVA VG + DGH F+ +A  +GA   VV+        
Sbjct: 20  HEAPDVTVTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGASVAVVTEDVKTALG 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   P + V N  + +   A    G+    ++ +TG++GK++             +
Sbjct: 80  --------PCIRVQNALQAVQALARWERGQFEGPVVGITGSNGKTTTKE----------M 121

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  +G        + +       P+ + +  +   +       +E    GL Q      
Sbjct: 122 VAAVLGALGPCVYTSANQNNELGLPLTILQRDASHRAM-----VLEMGMRGLGQIEELCT 176

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                        +            A  +             +   D      M+   +
Sbjct: 177 IARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRTS 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A      +G  G  I    V          +            L G+  V NAL A  + 
Sbjct: 237 ARILWYGMGE-GCDIRATSVTWSQEGMSFEVDTPHGTATLRIRLLGQHNVMNALAAIAVG 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL---EMILKNIRTI 379
             +GI    +   L ++    GR   V     G    +D A+ ++       +    R  
Sbjct: 296 QTLGISLGDIQIGLGRVEAQRGRLRLV---DAGDVTVIDDAYNASPSSVGASLEVLERIA 352

Query: 380 TSGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             G  + V G     G+        +G ++A    D  +           E  RA    G
Sbjct: 353 RPGHRVAVLGDMLELGEMAVQAHREVGRRVASAGVDRLLCV----GVLAVEMARAAEEAG 408

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           +P         E + +    L   DV++V A +G
Sbjct: 409 VPVVRHFNALEELLASVGSYLQPGDVVLVKASRG 442


>gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 455

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/475 (15%), Positives = 148/475 (31%), Gaps = 41/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKDLNTTCEGDDKTVITSVAFDSRKITTGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VDN    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PENITVIEVDNPLTAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H L  +     +   +  +        +           + L +
Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+   A               +            T ++   + 
Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGHHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     GR I V G   +  + K P +     D  D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGK-KSPELHAGLSDTLDPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   +          +  +      I      +   D++V+  KG
Sbjct: 389 VYLYGSEMKNLYDALQDKYEPENLHYYTQDQMDHMINDLKNDIKPDDIIVL--KG 441


>gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 453

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 145/402 (36%), Gaps = 25/402 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL   L    +      I E+  DSR ++ G +FVA+ G + DGH F  +A +
Sbjct: 1   MIPTFLKELAEVLQGHSIGD-NVPITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEAQS 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  ++             +    P +VV +TRK L   A+ +  +    ++A+TG+SG
Sbjct: 60  HGAVGLLSEC---------LLPIKLPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++SG   +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILRQSGHVLYTKGNFNNRIGVPLTLLRLTPE-------------HDFAVL 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS  G         +      TNL + H+    + +    AK  +   L P  +  I
Sbjct: 158 ELGASQPGDIADTAALSRPENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAII 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + K           R      +        +  +      T+           P
Sbjct: 218 HATSHDWPKWKSVFRGKRLWRFGLEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   V NAL A+ L I++G D + + + L +L  VPGR   +        +   Y   
Sbjct: 278 LPGLHNVLNALAASALAISVGADLSAISKALSELKPVPGRAFPMILGPGKLLLDDTYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKI 405
             S+    + +  +   R++VV      G++ +     +G I
Sbjct: 338 VGSMIAATEMMSNMPGYRVMVVGDMAELGEQSKNCHKKIGNI 379


>gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
 gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
          Length = 456

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 173/469 (36%), Gaps = 36/469 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++  +              ++++ V  DSR +Q G++FVAI G + + H FI
Sbjct: 1   MK--NLSIENITKACRGTFHGDESILSQEVSGVVIDSRKVQPGYLFVAIDGERVNAHKFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  +  GA  +V               ++ P ++V++T + L   A          ++ +
Sbjct: 59  PDTVKAGAMCVVSHEDLG--------ETDFPYILVESTGQALLDIAKLYRDSFDMKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +       +G  +             P    +A     ++  
Sbjct: 111 TGSVGKTSTKEMIASVLAQKYHVHKTLGNFNN-EWGLPITIFDMPEDTEVAVLEMGVNHF 169

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G        +S  +               TN+G  H+++ +T++     K ++ +++   
Sbjct: 170 GEMRRLSSVASPDI------------CVITNIGIAHLEFFKTREGILQEKSQMIQDMKNG 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S  +   DD  SK    +        +      +  +++          +T+  +G  F
Sbjct: 218 GSIILNGDDDLLSKMSPVKGVTPVFFGMGDNCAFRADNIEPQGLRGTSCTITLK-DGSSF 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D L P+PG   V NA+  A +   +G+ +  +   +E L  +PGR   + T+        
Sbjct: 277 DCLVPVPGIHMVSNAVAGAAVGYTLGLTADEIKAGIESLPSIPGRNHIIETDHMIILDDC 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVT 416
            Y     S++  +  +  +  GR + V G  G+       +  ++    A    D+    
Sbjct: 337 -YNANPISMKASIDVL-NMAIGRKVAVLGNMGELGDTAEALHAEVGTYAAEQNVDLVCGI 394

Query: 417 DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D  RS     +  E   G     +   +    I+   +++   D ++V
Sbjct: 395 GDLTRS-----LVEEASKGANTEALWFADNESFIQAIPDIIKDGDNVLV 438


>gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 92/447 (20%), Positives = 157/447 (35%), Gaps = 35/447 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N+V +DSR ++ G +FVA+ G + D H F+     QGA A+VV                 
Sbjct: 39  NDVVTDSRAVKPGNVFVALRGERFDAHDFLDAVADQGAAAVVVER--------VPPGLAL 90

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P +VV +TR  L   A     +    ++ VTG++GK++V   +  I   +      +G  
Sbjct: 91  PAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKTTVKEMIATILAAAFGEEGYLGTR 150

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              ++           P+ L +  +   +  +  + +          R+       G   
Sbjct: 151 GNFNNEI-------GVPLTLFRLRAQHQAAVIE-MGMNHPGEIAVLSRIAA--PTLGLVN 200

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N  R+H ++  T +A       +    LP +  A+  ADD ++    + A         +
Sbjct: 201 NAQREHQEFMATVEAVARENGAVIRH-LPADGVAVFPADDDFTPLWREEAGARRVLSFGL 259

Query: 271 GYQGKFIHLKKVCAIHNKQQVTIS---VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             Q       +  A  +  QV +    V    F       GE  V NAL AA   +  GI
Sbjct: 260 SAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNVRNALAAAACALGAGI 319

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               V+  LE    V GR +     S    I   Y    +S+   +  +  I   R++V+
Sbjct: 320 AIEAVVRGLESFAPVNGRLQRKEARSGALVIDDTYNANPDSVRAAIDVLAAIAGPRVLVL 379

Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEK 442
              G  GD+       +G  A                E  +           G+   +  
Sbjct: 380 GDMGEVGDQGPQFHAEIGAYARSRGIPLFFGL----GELTKHAVTAYGATPQGVAQALHF 435

Query: 443 GNRIEAIRTAIEMLNK-QDVLVVAGKG 468
            +   A+  A+E        ++V  KG
Sbjct: 436 DDIA-ALNAAVEQAAPQGATVLV--KG 459


>gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 452

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/414 (21%), Positives = 158/414 (38%), Gaps = 27/414 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +     +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTASNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRQVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G   A V   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST 390


>gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
 gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
          Length = 448

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 177/471 (37%), Gaps = 41/471 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+     +P   +  KI+ V+ DS+ ++ G +F A+ G   DGH F+ Q
Sbjct: 1   MRSILLEDWVTLMLSNVKYPRSGK--KISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VVS  Y    F         ++VV++T + L              I+ +TG
Sbjct: 59  AAQSGAVAAVVSKDYQGDSF------GLELIVVNDTTEALKEAGESQSHLLQGTIVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++  +F Q +                 S  + +++LT P  + +A           
Sbjct: 113 SIGKTTTKAFTQTLLSSVYRV--------YASPKSYNSQLTVPLSLLMADGDEDFVI--- 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S     Q  L  ++      TN+   H+     Q     A+     ++L    
Sbjct: 162 --LEMGVSEPKNMQDLLSIVEPEVAVITNITDQHVMNFPDQGVQGIAE--EKSQILCNSR 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  D  +    +K++ +A     +   +    + K +        V IS    D DF
Sbjct: 218 VQLLPKDSPWYPHFIKQSMSAEKFSFAFYDETADFYYKVIRK----DSVVISTPEGDIDF 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
               P +    N L++  L   + +    ++     L + P RFE    N     I   Y
Sbjct: 274 AVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPMRFEQSIRNGI-QIINDAY 332

Query: 363 AHTSNSLEMILKNI-RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
                ++   L  I      G++I++ G     G+  +    ++   AL  A+I      
Sbjct: 333 NACPEAMLAALDAIPHPSEGGKVILILGHMAELGNYSEEGHTVVANKALSKANIIFFI-- 390

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
               E    IR  + HG        +  + I   ++  + + D++++  KG
Sbjct: 391 ---GEKWLPIRHLVKHGACEVSFYPS-AQGIEEMLKKVVQQGDIVLL--KG 435


>gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
 gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
          Length = 457

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 151/415 (36%), Gaps = 26/415 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  +    +++   I         IN VS+D+R ++ G +FVAIVG++ D H F  QA+
Sbjct: 3   DVSLEQICSVVSGELIEAGNSNNNVINAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A A++V     L         N   +VV++T+  L   ++ ++ +     +A+TG+ 
Sbjct: 63  EANASALLVERKLDL---------NITQVVVEDTKLALGELSAWIHKQCDVPTMAITGSC 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   V  I Q+ G   F  G  +               P+ L ++ S         
Sbjct: 114 GKTTVKEMVASILQQRGKVLFTAGNFN----------NDIGVPLTLLRSESS---DDYAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +    +K       N+   H++   +      A      + L     A
Sbjct: 161 IELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQA-KGEIFQGLAAGDTA 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303
           I+  +        +   +      S G +      + +      +    +          
Sbjct: 220 IVNLESNGGDFWNEVLADKTVLTFSEGSREADYFAENIEINDQGEACFDMQTPQGATAVE 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G+  V NAL AA L I  G     +   L  L  V GR E    +     I   Y 
Sbjct: 280 LGIIGQHNVTNALAAAALSIQFGATLDEIKSGLANLISVKGRVEVQQLSQNIKLIDDSYN 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +++   K + +    R +++      GD        +G+ A   A   ++T
Sbjct: 340 ASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT 394


>gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
 gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
          Length = 452

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 165/467 (35%), Gaps = 38/467 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     +L        +      +    VS+DSR I+A  +F+A+ G + D H F  Q 
Sbjct: 1   MIPITLNQLAQVTQGRIVNATNHDLTLLNVSTDSRKIEASCLFIALKGERFDAHEFAGQV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A++V            +  N P ++V++TR  +   A  +  +    ++ +TG+
Sbjct: 61  VEAGATALLVDH---------QLDVNCPQVIVEDTRIAMGQVAGWVRQQSKARVVGLTGS 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+SV      I  + G + +  G  +               P+ L +           
Sbjct: 112 SGKTSVKEMTASILGQRGNTLYTAGNLN----------NDIGVPLTLFRLTDE---YQFA 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+     ++  + +K       NL   H+    + +    AK  +++ L  + + 
Sbjct: 159 VIEMGANHPHEIEYTTNIVKPETALVNNLFGAHLAGFGSPEGVAKAKGEIYQGLPEEGTA 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +     +   +   R             +    +   +         T+       +  
Sbjct: 219 IVNLDSYSDKWQFGSRQ----TVWYYSLTETADFYPSNIQIKQLTTDFTLHTPVGQVEIT 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PLPG   + N L A+ L I++G     + + +     VPGR   V  +     +   Y 
Sbjct: 275 LPLPGVHNIANVLAASALAISVGATLEDIKQGIATTKAVPGRLFPVRLSDTKVVLDDTYN 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
               S+   +  +  +   RI+V    G  GD        +G +A   A +  V      
Sbjct: 335 ANDGSMIAAINVLAKMPGYRILVAGDMGELGDYAHECHERVG-LAAKQAGLDKVLSVGQL 393

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           SE    I ++       F  K +    +   I +  + DV+ +  KG
Sbjct: 394 SE----IISQSSERGEHFTVKQDL---LTRLIPLAQQNDVVSILVKG 433


>gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
          Length = 457

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 88/465 (18%), Positives = 176/465 (37%), Gaps = 34/465 (7%)

Query: 5   DLIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L+   F E++N +     +     K   +S+D+R I    IF+A+ G+  + + +I  A
Sbjct: 2   ELLK--FEEIVNAVGGKVHINSGNHKYTNISTDTRKITKDSIFIALKGDNFNANDYIVDA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA   +V     +    + +  NT I++V+NTRK L   A     K    I+ +TG+
Sbjct: 60  SDKGANLCIVD---EINFNDSDLNENTSIILVENTRKALLDLAELYRSKLNIKIIGITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S                   G  +                + L   +  L +    
Sbjct: 117 TGKTSTKDLTAAALSSKYKVFKTQGNFNNE--------------VGLPLMIFSLDNSYDV 162

Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V     S+  + HRL  + K      TN+G  HI+  +T++    AKM + +       
Sbjct: 163 AVLEMGMSNFEEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSI 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   +D     +     N    +     +      + +    N  + T+  E +   F
Sbjct: 223 LIVNKEND----LLKNVKSNEYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  + N+++A     ++ I+   + + ++ L V   R + V  +     +   Y
Sbjct: 279 NIPVPGKHNILNSMLAIVAGRSLDIEYDKLKQGIKNLSVTSMRLDIVKKDGF-TIVDDSY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             + +S++  +  I TI   R I + G     GD        + + A +     ++T   
Sbjct: 338 NASPDSMKAAIDVITTIKGNRKIAILGTMKELGDDSYKFHKEVAEYAKENNIDFLITVG- 396

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  +   E  +    F E     +A       L ++D+++V
Sbjct: 397 ----EFNEAYKEGYNNNLNFKEFNTIEKAADFITSNLKEKDIILV 437


>gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 461

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 145/382 (37%), Gaps = 18/382 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++  +  +L   L+   +     ++  +S+D+R +    +F A+ G   D H ++ +A+A
Sbjct: 1   MLKLNTQKLAEILNAKLVGNGLVEVENISTDTRKMVVNSLFFALKGENFDAHHYLDKAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV               + P LVV++T+  L   A  +       ++A+TG+SG
Sbjct: 61  QGAVALVVQK--------INSHLDVPQLVVEDTKIALGELAKWVRETVNPLVVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q+S ++S  +  T    +      LT                     +
Sbjct: 113 KTTVKEMTASILQKSAVNSDTVLFTEGNFNNDIGVPLTLL---------RLTPEHQFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     K       N+   H++   + +    AK  ++   LP    AI
Sbjct: 164 ELGANHQGEIAYTTSLAKPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYRG-LPASGVAI 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  +  YS +  +       +  +        +   V    +  +  +           P
Sbjct: 223 INKEHNYSIKWAQEIGERAIQYFAYQDATADFYADNVQFNESGSEFELHTPQGQIHISLP 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G     V + LE    V GR   +        +   Y   
Sbjct: 283 YLGEHNVKNALAATALAMNVGASLTQVKKGLEMRSQVKGRLFPIQPCENLLLLDDTYNAN 342

Query: 366 SNSLEMILKNIRTITSGRIIVV 387
            +SL+  +  ++  ++ RI++V
Sbjct: 343 VDSLQSAISVLQKYSAFRILIV 364


>gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
 gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
          Length = 455

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 90/472 (19%), Positives = 148/472 (31%), Gaps = 46/472 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L       L+           +   + VS DSR + AG +FVA+ G + DGH ++
Sbjct: 5   MTLSQLTAALSARLVG---------ADASFSGVSIDSRSVGAGELFVALAGPRFDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
               A+GA A +V    +          + P LVV ++R  L    +     + + ++A+
Sbjct: 56  ADVQAKGAVAALVEREVA--------NVDLPQLVVADSRLALGQLGALNRAGYDKPVVAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  I +  G      G  +              +P+ L +        
Sbjct: 108 TGSSGKTTVKEMLACILRTRGPVHATRGNLN----------NDLGAPLTLLEI---APQH 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G +     G+        N                        E L +
Sbjct: 155 SAAVIELGASRIG-EIRYTVGLTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKD 299
              AI+  DD        RA        +        H   +          T+   G  
Sbjct: 214 GGTAILNLDDKAFAIWKARAAAHKVISFARSDARADFHATDIGRDARGCPSFTLHGAGAS 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + GE  V NAL AA    A+G+  + +   L  +  V GR       S    I 
Sbjct: 274 VAVQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLNAMQPVKGRTVAQIAPSGVRVID 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVT 416
             Y     S+   +  +    SGR ++V G  G+  Q        +G  A    D     
Sbjct: 334 DSYNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALYAV 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             N        +   +            + E I            +++  KG
Sbjct: 393 GTN--------MTHAVKAFGANGRHFATQAELIEAVRAETASNTTILI--KG 434


>gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 185

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 7/186 (3%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTST-ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
            Q     G     +G   T      Q  R TTP PI +   L+ L   G   V++E SSH
Sbjct: 120 AQALDALGQHCGIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSH 179

Query: 193 GLDQHR 198
           GLDQ R
Sbjct: 180 GLDQGR 185


>gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 455

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/465 (16%), Positives = 162/465 (34%), Gaps = 30/465 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   +L   L+     + +  ++ +S D+R IQ G +FV   G   +GH ++ QA  +G
Sbjct: 2   KKTLKQLAAWLNEDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +                  P+L VD+    L   A     +H    + +TG++GK+
Sbjct: 62  AGASLWQKD------EPNPPDGIPLLFVDDPEIALQEMARAYRLEHKAKFIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +             IG  +               PI + +         V  + +
Sbjct: 116 STKDILAGTLAPFFKVQKTIGNFNNQ----------LGLPITILQ---LDEDTEVAVLEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +      +      TN+G  H+    ++     AK  + + +   E      
Sbjct: 163 GMSGFGEIEFLTKLAQPHMTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQ-PEGLLFYD 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+   +E++ +  +      + G +   +        +       +    + DF   + 
Sbjct: 222 GDEPLLQELVAKEQHINAV--AFGLEPDNLLYADHIHANANGSSFTTHGMIEGDFFISVL 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+ QV N L+A  +   +G+++  +   LE + +   R + V   +    I   Y     
Sbjct: 280 GKHQVKNTLIAMLISNQLGLNNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAPT 339

Query: 368 SLEM--ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           S++         TI   + +V+      G  +Q     + +   +  +I  V     R  
Sbjct: 340 SVKAAIQFIATSTIRPEKWLVLGDMLELGPDEQRFHEGLAEYINEQ-EIDYVCLFGARMT 398

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++  E        +   +   AI   +E+ N+  ++++  KG
Sbjct: 399 HLYEVLKEDFE-ADRLLYTEDDYTAIIEKLELANESSIVLL--KG 440


>gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 455

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 121/410 (29%), Gaps = 37/410 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +FV I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  + +  +           +L V +T K +   A     K    ++ +
Sbjct: 54  GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE--------------IGVPMTILEMKPI 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +     +   +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFLGSRDKIADAKMEITDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     ++        +  S         +               + G D 
Sbjct: 214 DGEFIYNGDEP----LLAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGK 404
            Y     +++ +  +   +     GR I V       G R       +  
Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 456

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 164/465 (35%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +    + + +   +    + +  I   ++D+R ++   +F+ + G   +GH F+PQA
Sbjct: 1   MIKRTVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G  A++                   +++VD+T + L   A     +    ++ VTG+
Sbjct: 61  FEKGVSAVLWDR------SEPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +           G  +          L  P    +A            
Sbjct: 115 NGKTTTKDMLHAVLGTQYRVHKTAGNFNNH-IGLPLTVLAMPEDTEIA------------ 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G         +  A   TN+G  H+    +++    AK+      L ++  
Sbjct: 162 VLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKL-EIINGLREDGV 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
              + D+     +++                  + LK++         TI    + F   
Sbjct: 221 LFYFGDEP----LLREKAYTCRTTTYGEGADNDLRLKEIKQAEEGTYFTIDGIDRSFF-- 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   V NA+ A    I  GI        L +L V   R E V T +    +   Y 
Sbjct: 275 IPVLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYN 334

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S++  ++ I T+    + ++V G     GD ++      G          + T   
Sbjct: 335 ASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKAFHEECGAAINPAEIDHVFTYGT 394

Query: 420 PRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +   +  R     G +  +++K   +EAIR   E     D+L+
Sbjct: 395 LGAFIADGARKHFEEGRVSHYLDKKELLEAIR---ENAASGDLLL 436


>gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
 gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
          Length = 454

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 172/468 (36%), Gaps = 34/468 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  K+     N   + P +  ++++  + +DSR  +AG +FV I G + D H FI
Sbjct: 1   MK--NLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            Q + +   A +       + F        P ++V ++   +   A     +    ++ +
Sbjct: 59  EQVMEKAVLATLSEKDLGEKPF--------PYILVKSSLIAVKDIAEFYLKQLQIPVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +   +    G  +               P+ + +        
Sbjct: 111 TGSVGKTSTKEVIASVLAQKYNTLKTQGNFN----------NELGLPLTIFRLRDE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +  + +  S  G + HRL  I +      TN+G  H+++ +++     AK  +F+ L  
Sbjct: 158 EMAVLEMGISDFG-EMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQS 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   +    D      ++           V         +            I    + 
Sbjct: 217 DDHIIL--NGDDDKLVTVQETKGIKPVFFGVENHQGIWADEIKPEGLKGISCCIHAGEES 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F  L P+PG+  VYNAL A  + +  G+    + + +E L  V GRF  +   +      
Sbjct: 275 FSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEAPNYTVIDD 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA---DIAIVT 416
             Y     S++  L  +     GR + + G  G+    +R  M K     A   +I ++ 
Sbjct: 335 C-YNANPISMKASLDVLTD-ALGRKVAILGDMGELGADERK-MHKEVGKHAAEKEIDVLL 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                S+D      E+           ++   ++   E+L K D ++V
Sbjct: 392 CVGELSKDMADAAGEVNSK-TQVRHFADKEALMKELPELLEKGDTVLV 438


>gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 464

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/438 (16%), Positives = 151/438 (34%), Gaps = 25/438 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+D+R I+   IF+A+ G + +G+ +   A  +GA   +V   Y  +   + I   T
Sbjct: 27  RNVSTDTRKIEEKDIFIALKGERFNGNKYAAVASDKGASICIVDEVYFKK---SEINECT 83

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V +  + L   A     K    ++ +TG++GK++    +  +           G  
Sbjct: 84  SVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSAGKTTTKDLITSVLSAKFKVFKTEGNL 143

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                          +S  V  + +  ++ G         +      T
Sbjct: 144 NNQIGLP-------------HMIFRLNNSYDVAVLEMGMNNRGEIHSMAKAARPDIAVIT 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ R HI    T++    AK+ + +      +  I    D      +K       RV   
Sbjct: 191 NVLRAHIGNLGTRENILAAKLEITDFFSKDNTLVI--NSDNDMLSNLKEDRFNIRRVGLE 248

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  +  +V        +  +    +  F   +PG++ V N+L+A      + +   
Sbjct: 249 ENSDISAYDIEVKEDFISFNICENNVKMEERFKVNVPGKYNVLNSLLAVACGRILNMTYG 308

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E L+ +     R E          I   Y     S++  +  ++   S R + V G 
Sbjct: 309 EIREGLKNIETTAMRMEICKGKKFN-VINDSYNANPESMKAAIDVLKNFKSKRRVAVLGT 367

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               GD        +GK A +   I I+      +ED ++   ++ +     I      E
Sbjct: 368 MGELGDESCRMHEEVGKYAGENG-IDILIALGEYAEDFKRGF-QVTNKNGKCISFDTYAE 425

Query: 448 AIRTAIEML-NKQDVLVV 464
            +   ++    + D +++
Sbjct: 426 TLEFLLKKCIVEGDTVLI 443


>gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 454

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 172/468 (36%), Gaps = 34/468 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  K+     N   + P +  ++++  + +DSR  +AG +FV I G + D H FI
Sbjct: 1   MK--NLTLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            Q + +   A +       + F        P ++V ++   +   A     +    ++ +
Sbjct: 59  EQVMEKAVLATLSEKDLGEKPF--------PYILVKSSLIAVKDIAEFYLKQLQIPVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +   +    G  +               P+ + +        
Sbjct: 111 TGSVGKTSTKEVIASVLAQKYNTLKTQGNFN----------NELGLPLTIFRLRDE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +  + +  S  G + HRL  I +      TN+G  H+++ +++     AK  +F+ L  
Sbjct: 158 EMAVLEMGISDFG-EMHRLAKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQS 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   +    D      ++           V         K            I    + 
Sbjct: 217 DDHIIL--NGDDDKLVTVQETKGIKPVFFGVENHQGIWADKIKPEGLKGISCCIHAGEES 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F  L P+PG+  VYNAL A  + +  G+    + + +E L  V GRF  +   +      
Sbjct: 275 FSVLIPVPGKHSVYNALAATAVGLTYGLTIEEIRKGIESLQSVSGRFHIIEAPNYTVIDD 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA---DIAIVT 416
             Y     S++  L  +     GR + + G  G+    +R  M K     A   +I ++ 
Sbjct: 335 C-YNANPISMKASLDVLTD-ALGRKVAILGDMGELGADERK-MHKEVGKHAAEKEIDVLL 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                S+D      E+           ++   ++   E+L K D ++V
Sbjct: 392 CVGELSKDMADAAGEVNSK-TQVRHFADKEALMKELPELLEKGDTVLV 438


>gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 478

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 158/469 (33%), Gaps = 43/469 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I      P + +   I+ V+ DSR+++ G +FVA+ G + DGH ++ +A   GA A++V
Sbjct: 16  IIGAAVFSPSERKTVTIDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAARAGASAVLV 75

Query: 74  SSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSS 128
                        +    S   ++ V++    L   +     +      +AVTG+SGK++
Sbjct: 76  DHEKSACVEGGWAAFATHSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAVTGSSGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +    G  ++         +  P  +          +       + 
Sbjct: 136 TKELLGSVLSMKAPTVVNPGNLNS--------EIGLPLAL-----FGVGPADHFGVFELG 182

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +  G  +             TN+G  H      ++  F  K ++   +   E       
Sbjct: 183 INRIGEMELLSSLYHPQHLLITNIGTAHSGPLGGKEGVFREKTKVLAHMQ-GEGFVFYPE 241

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD     +  R  +   R            ++ +       +       +     +PL G
Sbjct: 242 DDDRIDALKSRYPSLAFRPYGPATLTGLETVEDLGTEGWLLR------YRGVSIHYPLLG 295

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N      L   +G+   L+   L     V GR   +            Y    +S
Sbjct: 296 QHNLQNGCGVIALAFELGVSPELIGAALSAAAPVAGRCRLLRGAISVLDDC--YNANLDS 353

Query: 369 LEMILKNIRTITS-GRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIV----TDDN 419
            E + + I ++   GR ++VFG   +         R     IA    D   +    T ++
Sbjct: 354 SERVFEYIASLPWDGRKVIVFGSMKELGSSSLDAHRAAGQAIASSGVDAVFLYGEETSES 413

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            R    +   ++I+H      ++ +        +  + + D++++  KG
Sbjct: 414 FREISDQGSMSQILHFSENQFDELS-----ERLLAFVREGDLVLL--KG 455


>gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 455

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 121/410 (29%), Gaps = 37/410 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +F+ I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFIPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  +    +           +L V +T K +   A     K    ++++
Sbjct: 54  GSAIEAGASATLWEAGNPNK------PEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE--------------IGVPMTILEMKPI 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +     +   +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     ++        +  S         +               + G D 
Sbjct: 214 DGEFIYNGDEP----LLAERAAKLPQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIMGK 404
            Y     +++ +  +   +     GR I V       G R       +  
Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEDGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 463

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 172/453 (37%), Gaps = 32/453 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           ++  + ++NE+S+D+R ++   +FV ++G   DGH FI QA+ +GA   +V      Q+F
Sbjct: 19  LEGTKDQVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQAMERGAIGALVQKG---QEF 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                ++  ++ V++T + L               + VTG++GK++    +  I + +  
Sbjct: 76  PLGKLNDFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGKTTTKDMIAGILETNFN 135

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +               P+ L    +      +  + +  +S G        +
Sbjct: 136 VLKNEGNLNNQ----------IGLPLTLF---NLEPCHEIGVLEMGMNSLGEILSLAKTV 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+G  HI++  +Q+    A        L ++   +I  DD + K V + +  
Sbjct: 183 QPHIAVITNVGFSHIEHLGSQENILTA-KMEITTRLREKDYLLINGDDPFLKTVKEESKT 241

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +           VC      +  + ++ K   F    PG   VYN LVA  + 
Sbjct: 242 YRIITFGIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLVALWVG 301

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   +    + +  ++L +   R E V            Y  + +S++  +  +   T  
Sbjct: 302 LHYQMTPLAIQKGFDRLELSKMRLEIVTYGDVKVINDA-YNASPDSMKAAITVLNQSTGI 360

Query: 383 RIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIP 437
           R I + G   +     ++G R I   IA    D  I        +  + I  E +  G  
Sbjct: 361 RKIAILGDILEMGSFAEEGHRRIGSFIATSPVDYLITV-----GKSAQWIAREAVEQGFS 415

Query: 438 GFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   +   AI+    +L+ +DV++V  KG
Sbjct: 416 QAHIYQTPSNDLAIKVLKTLLSPRDVVLV--KG 446


>gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
 gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
          Length = 455

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 159/466 (34%), Gaps = 37/466 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  +   +  +L+   +   + +   VSSDSR I    +FVA+ G K DGH F   A+ 
Sbjct: 1   MIPLNLSGICQRLNARLVG-ADGEFRHVSSDSRVIPEHTLFVALKGEKFDGHDFANMAVE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V            +  N   L+V +T+K +    + L        +A+TG++G
Sbjct: 60  NGATALLVDHE---------LPLNIAQLIVKDTQKAMGDLGAYLRELIQPKSVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   V  I  +     +  G  +               P+ L +  +          
Sbjct: 111 KTSVKEMVATILSQRHKVLYTAGNFN----------NEIGVPLTLLRLEADDEFGVFE-- 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               ++H  +      +     +  N             A            L     A+
Sbjct: 159 --LGANHQGEIDYTSSLVKPDVALVNNVASAHLEGFGSLAGVACAKSEIFNHLAATGTAV 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I ADD ++  ++  + +       V  +                +  +S   +      P
Sbjct: 217 INADDQFASVMLSASMSFTQLTFGVESEADIQASDLEADSVGCYRFKLSYMQESVLIALP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G  QV NAL A  +C++ G+    +   L  L  V GR            I   Y   
Sbjct: 277 LSGRHQVSNALAATAICLSFGLTLDEIKLGLSLLLPVKGRMLPTQLGRV-RVIDDSYNAN 335

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             S+   +  ++ I   R +V+   G  GD        +G++       ++ T      E
Sbjct: 336 PASVTAAIDWLQEIEGHRCLVLGDLGELGDNASLLHTELGELIKQRGLDSLFTL----GE 391

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-LVVAGKG 468
                      G+ G I     +E +   I+ L   DV ++V  KG
Sbjct: 392 LSANASRAF--GVDGHISLERLVEDLIKNIKQLQ-GDVTVLV--KG 432


>gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Coprococcus sp. ART55/1]
          Length = 455

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/473 (15%), Positives = 160/473 (33%), Gaps = 44/473 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  K+  E      +         + ++  +S+  + G +FV I+G + DGH FI  A+
Sbjct: 3   DITVKNILEATGG--VLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A A + S      +    + S+   + VD+T K L      +  ++   ++AVTG+ 
Sbjct: 61  QT-AAATLTS------EHDNVVVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSV 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +              G  +++             PI +++         V  
Sbjct: 114 GKTTTREMITAAVSAGMKCFHTEGNYNSVY----------GEPITVSRMTDE---YDVAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G      D  +      T +G  HI+Y  + +     K+ + + +    +  
Sbjct: 161 LELGIGEPGEMDILTDIAQPDICVITTIGVAHIEYMGSLENTRKEKLNIIKGMGENGT-- 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +    D      +K            G  G       +          +           
Sbjct: 219 LYINGDDPMLYAVKDEIPCKVYTYGCGE-GMDFRATNIRMEDGYSVYDMVHGDDVVTVKV 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   V N+LVA  +   +G+      +  E       R + +    +   I   Y  
Sbjct: 278 GVMGLHNVRNSLVAMAVSHQLGVPYEKSSKAFENFRG--LRQKVIKLPGKYTIIDDTYNA 335

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDN 419
           + +S++     +  +   G+  +V G     G++       +G+       D  IV    
Sbjct: 336 SPDSMKASTDVLCDMKCEGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVI--- 392

Query: 420 PRSEDPEKIRAEIIHGIPGF---IEKGNRIE-AIRTAIEMLNKQDVLVVAGKG 468
              E  +KI+  +      +   +   +  E AI   + ++  +D++++  KG
Sbjct: 393 --GEHAQKIKEALDACDTKYAKTVSFTDTEEIAI-YLMALMKPEDIVLL--KG 440


>gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
 gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 89/404 (22%), Positives = 145/404 (35%), Gaps = 27/404 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L  +  I   Q    +I EV+ D+R +  G +FVA+ G + DGH F             V
Sbjct: 5   LNAEYIISDTQRNNIEITEVTIDTRQVTGGCLFVALKGERFDGHDFAEN---------AV 55

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++       S  +    P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V
Sbjct: 56  AAGAGALLVSKRLLVGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMV 115

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I ++ G   +  G  +            TP                   + + A+  G
Sbjct: 116 AAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPE-------------HDFAVIELGANHVG 162

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +  D  +  +    NL   H++   +      AK  +F  L    +  I    + + 
Sbjct: 163 EIAYTTDLSRPESALVNNLSAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWP 222

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                  H    R  S   +       +V         T+           PLPG   + 
Sbjct: 223 HWQETLHHKRVWRFSSQAGEDIDFFASEVRITAQATHFTLHSPFGTQAIELPLPGRHNIA 282

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA L +++G D A V + L +L  VPGR   +        +   Y     S+    
Sbjct: 283 NALAAAALAMSVGADLAAVRQGLTQLQAVPGRLFPIQLAVGKLLLDDSYNANVGSMTAAA 342

Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIA 413
           + +  +   R++VV      GD        +G+ A   A  D  
Sbjct: 343 QVLAEMPGYRVMVVGDMAELGDTAIDCHRQVGE-AAKHAGVDKV 385


>gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
 gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci RD1]
 gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
          Length = 448

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 174/471 (36%), Gaps = 41/471 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+     +P   +  KI+ V+ DSR ++ G +F A+ G   DGH F+ Q
Sbjct: 1   MRSILLEDWVTLMLSNVKYPRSGK--KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQ 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A VVS  Y    F         ++VV++T + L              I+ +TG
Sbjct: 59  AAQSGAVAAVVSKDYQGDSF------GLELIVVNDTTEALKEAGESQSHLFQGTIVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++  +F +                   S  + +++LT P  + +A           
Sbjct: 113 SIGKTTTKAFAKTFLSSVYRV--------YASPKSYNSQLTVPLSLLMADGDEDFVI--- 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S     Q  L  ++      TN+   H+     Q     A+      +L    
Sbjct: 162 --LEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNFPDQGVQGIAE--EKSHILRNSR 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  D  +    MK++ +A     +   +    + K +        V IS    D DF
Sbjct: 218 VQLLPKDSPWYSYFMKQSVSAEKFSFAFYDETADFYYKAIRK----DSVVISTPEGDIDF 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
               P +    N L++  L   + +    ++     L + P RFE    N     I   Y
Sbjct: 274 AVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPMRFEQSVRNGI-QIINDAY 332

Query: 363 AHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
                ++   L  I   +  G++I++ G     G+  +    ++   AL  A I      
Sbjct: 333 NACPEAMIAALDAIPNPSEGGKVILILGHMAELGNHSEEGHTVVANKALSKASIIFFI-- 390

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
               E    IR  + H         +  + I   ++  + + D++++  KG
Sbjct: 391 ---GEKWLPIRHLLKHDTCEVSFYPS-AQGIEEILKKVVQQGDIVLL--KG 435


>gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
 gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
          Length = 453

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 146/404 (36%), Gaps = 22/404 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   + ++  V +DSR    G +FVA+ G   D H F+   +AQGA   +V 
Sbjct: 7   VAQLAGGRLAGADAEVTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQGAAGALVR 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             ++L            ++ VD+TR  L   A+    +    ++ +TG++GK++V   + 
Sbjct: 67  QDFALP--------GVALVQVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVKEMLT 118

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I          +      ++           P+ L    +         + +  +  G 
Sbjct: 119 AILAAHAGRDTVLATAGNFNNDI-------GLPLTLLGLNAGHR---YAVIEMGMNHFGE 168

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            ++     +       N  R H+    +  A          E L ++  A+I ADD ++ 
Sbjct: 169 IRYLTGLARPRVALVNNALRAHLGGGFSGTADIARAKSEIFEGLAEDGVAVINADDPHAA 228

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                A       LS G     ++ + V          +     D     P PGE  V N
Sbjct: 229 IFRAAAAGRRL--LSFGLGEADVNARDVTLSDTAAHFVLCSPQGDVAVALPAPGEHNVRN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA   +A+ +  A +   L     V GR +     +    I   Y    +S++  + 
Sbjct: 287 ALAAAAAALALEVPLAAIAAGLAGFAGVRGRLQRKHAGNGATLIDDTYNANPDSMKAGID 346

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    + R  V+   G  G+        +G  A +    A++T
Sbjct: 347 VLLQALAPRWFVMGDIGELGENAAALHAEVGAYARERGLDALLT 390


>gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 452

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 95/468 (20%), Positives = 174/468 (37%), Gaps = 40/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSCPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +               PI L +            +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNFN----------NDIGVPITLLRLNHD---YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSIIGDRLVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A+G     +   L  L  VPGR   +  +     +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G+ A     D  + T      
Sbjct: 337 VGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLST------ 390

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
               K+   I H         ++   I     +L +Q    ++V  KG
Sbjct: 391 ---GKLSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILV--KG 433


>gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
 gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
          Length = 458

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 164/448 (36%), Gaps = 40/448 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA+ G   DGH F+ +A  QGA   +VS   +           
Sbjct: 24  VSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSQTIAQ---------- 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V ++   L         +    ++ VTG+ GK+     +     R          
Sbjct: 74  -PHVLVPDSAAALEALGRTSRARMQGKVVGVTGSVGKTGTKEALFHALDRVC-------- 124

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +    +        P+ L++     +        +  +  G        ++      
Sbjct: 125 PGEVHRSVKSYNNHVGVPLSLSRMPRESA---FGVFEMGMNHAGELAALTRQVRPHVAIV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   HI++  T++    AK  +FE  L     A+I  D  +   +  +A     R+L+
Sbjct: 182 TAIAPAHIEFFGTEEKIAEAKAEIFEG-LEPGGTAVIPYDSPHVATLYAKAEKHAARILT 240

Query: 270 VGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+  Q      + V A      VT ++ G +  F    PGE  V NAL       A+G 
Sbjct: 241 FGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVSNALAVLATVEALGG 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384
           D A     L ++  +PGR +       GG   +    Y     S+   LK +    + R 
Sbjct: 301 DLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSMAATLKQLGREQADRR 360

Query: 385 IVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           I V G     GDR +     + + +     D A++       E+     A+ + G+  F 
Sbjct: 361 IAVLGGMRELGDRSRELHAGLVEPLTAGQVDYAVLV-----GEE-MDPLAQALGGVMAFD 414

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +   AI      +   D ++V  KG
Sbjct: 415 HVPDAARAIDLIRNEMRAGDAILV--KG 440


>gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
 gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
          Length = 466

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 153/427 (35%), Gaps = 30/427 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + V +DSR ++ G +FVA+ G + D H F+   +A+GA A++VS    +         +
Sbjct: 29  FSRVHTDSRTVEPGDLFVALKGERFDAHDFLADVVARGAAAVMVSRKVDV---------D 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +TR  L   A+          +AVTG++GK++V   +  I   +     ++  
Sbjct: 80  VPALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNGKTTVKEMIAAIFAAAVGEGDRLAT 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +++           P+ +       +   +  + +  +  G   +     +      
Sbjct: 140 GGNLNNDI-------GLPLTVL---RLRAHHKLAVLELGMNHPGETIYLAGIAQPTVAVV 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRV 267
           TN  R+H ++  + +A  +         LP +  A+   D                  +V
Sbjct: 190 TNAQREHQEFMVSVEAVAHEHASAIAA-LPADGVAVFPVDAESGGAYAAIWRQAAGTRKV 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS G          V   +  Q + ++   + F     + G   V NAL A    +A G+
Sbjct: 249 LSFGTDASADVRATVSLENGVQVLDVTAPDRRFTLRLHVLGVHNVRNALAATACALAAGV 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D A +   +     V GR +   T +    I   Y    +S+   +  +    + R++V+
Sbjct: 309 DVAAIQAGIAGFTAVKGRLQVKHTPAGTVVIDDTYNANPDSMRAAIDVLAGFATPRLLVL 368

Query: 388 --FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
              G  GD+       +G  A     D    T      E           G   F    +
Sbjct: 369 GDMGEVGDQGPMFHTEIGAYARERGIDALWAT-----GELAPHAVQAYGGGARYFARAED 423

Query: 445 RIEAIRT 451
             +A+  
Sbjct: 424 LAQALEA 430


>gi|308235256|ref|ZP_07665993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 570

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 86/503 (17%), Positives = 159/503 (31%), Gaps = 76/503 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N ++ DSR I+   +   I GN +    ++  A   G    V   +Y+         +N 
Sbjct: 78  NHITYDSRDIKKNTLLF-IKGNFK--PEYLKDADKNGLTTYVAEQSYAD-------YTNA 127

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+V + RK +SL +S  +G   E +  +  T  K    +        +  S  +    
Sbjct: 128 VGLIVTDVRKAMSLLSSEFFGNPQERLRVIGITGTKGKTTTAYFTHAILNEHSEGKAALF 187

Query: 151 ST-----ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           S+           ++ LTTP  +   + +S     G+ ++ +E SS      R+ G+   
Sbjct: 188 SSVDNCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEVSSQAYKVERVYGLHFN 247

Query: 206 AGSFTNLGRDH--IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKR 259
             +F N+  DH     H T + Y   K ++ +        A     D        E +  
Sbjct: 248 VAAFLNISPDHISPIEHPTFEDYLYCKRQIVKNTDALILNADCAHADLILQDAQNEYVDV 307

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +  R   +G            +  +  + +       +     +P         VA 
Sbjct: 308 TTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKYVAMPVSSDAQEHYVAI 367

Query: 320 G-----------------------------------------LCIAIGIDSALVLEHLEK 338
                                                       + I  ++     H  +
Sbjct: 368 LDNESKKNKKQFVPNYTTIDKFNLKIAGDFNYENATAAIAIANALGINENTDQKALHAIE 427

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRD 395
              + GR E            VDYAH   S + ++  +         RI +V G  GD+ 
Sbjct: 428 NVQISGRMEVFKDTKSNTVAIVDYAHNYISTKSVVDFVYDKYGNNDLRITLVTGSTGDKA 487

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRT 451
             +R  + + A D  +  + T ++   ED   I   +   +           NR EAI  
Sbjct: 488 VDRRKEIVQAAQDRINQFVFTQEDTNVEDEMDICKYMQSCVTNPNVESRIIINRAEAIEY 547

Query: 452 AIEMLNKQ-------DVLVVAGK 467
           ++E   K        ++++  GK
Sbjct: 548 SVEEARKDARENNRLNIILAIGK 570


>gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
 gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
          Length = 427

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 125/384 (32%), Gaps = 35/384 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +D+R IQ G +F  + G   DG+ F  +AI QGA A VV +     +         
Sbjct: 12  TGIETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIEGKT------ 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+T   L   A     +    I+ +TG++GK++    +  +        F  G  
Sbjct: 66  --ILVDDTLLALQNLAKHHRCQFQIPIIGITGSNGKTTSKELISVVLSTQLHVHFTSGNL 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L +     ++  +  + + A+  G  +  ++      G  T
Sbjct: 124 NNH----------IGVPLTLLQ---LNTTHEIAVIEMGANKPGDIKELVEIALPTHGIIT 170

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H++  ++ +     K  LF  L           +D      +    +      S 
Sbjct: 171 NIGRAHLEGFKSLEGVIKTKTELFNFLAQNRGHIFANKEDETITSHLPSNTHNHFYNDSK 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G+      +                  D    L GE+   N L A  +    GI + 
Sbjct: 231 ELHGEL-----ISLNPFVNMTWSEPNYTSSDIHTNLVGEYNFINFLAAIRIGRFFGISAE 285

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
              + +        R +   T      +   Y     S+   L +   I +   I + G 
Sbjct: 286 NCNKAISDYQPTNNRSQVTKTEKNTLIVDC-YNANPTSMRSALSSFAKIDNHAKIFILGD 344

Query: 391 GGDRDQGKRPIMGKIALDLADIAI 414
                      MG  A  + +  I
Sbjct: 345 M--------REMGDEAPAVHEEVI 360


>gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
 gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
          Length = 470

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 136/414 (32%), Gaps = 42/414 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++     + +  +     +     I  V  DSR +  G +FV I G + DGH F 
Sbjct: 3   MTLSDILTAT--KAVGDVG----ERGNPVIEAVRIDSRAVTPGCLFVCIPGERFDGHNFA 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +GA A++             +   TP+L+V +T   L   A     +    ++ V
Sbjct: 57  AEAVGKGAAAVLADRPL------TGLPDGTPVLLVRDTVAALGFLAKAWRTQVGARLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V             ++  +G     +   ++       P+ + +A    +  
Sbjct: 111 TGSAGKTTVKEL----------TAAILGKLGPTAKNYKNFNNHIGLPLSMLEASDKDA-- 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G  +      +       N+G  H++          A+       L  
Sbjct: 159 -YWVMELGISRPGEMEPLAAIAEPDVAVIHNVGPAHLEALGDVAGVA-AEKTKLFNFLRP 216

Query: 241 ESPAIIYADDAYSKE----VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              A+   D     E    V  R      +    G    +           + +  + + 
Sbjct: 217 GGVALASMDYPELWEAALAVFPRVRGLSTKGQGKGRSAPYRAKYLGALPEGRGRFFLKLG 276

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             + +   PL G     N L AA     +G     +   LE   +   RF       +G 
Sbjct: 277 ELEMEVETPLTGGHFAENILAAATSAHILGAGEKQIAAGLETAVMPEQRF---YCRRQGC 333

Query: 357 RIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
              +D  Y     S+   +        G+ +V+         G+   MG  A +
Sbjct: 334 YTIIDDTYNANPLSMRRAIAAAVETAQGKPLVLV-------LGEMREMGAHAEE 380


>gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 453

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 143/404 (35%), Gaps = 25/404 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++I  L           I +V++DSR I    +F+A+ G + D H F   A+ 
Sbjct: 1   MIPFMLHDIITILRAKVYGI-NPMIEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNAVL 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA AI+V+           +  N P L+V++T   L   +  +  +    ++A+TG+SG
Sbjct: 60  AGASAILVNR---------QLPLNIPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G      G  +     +      TP                   +
Sbjct: 111 KTSVKEMTASILRQCGKVLATQGNLNNDIGVSLTLLRLTP-------------QDDFAII 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G      + +        N+   H+    +      AK  +F +L       +
Sbjct: 158 ELGANHIGEISSNANLVLPEIALVNNISFSHLAGFGSLAGVAQAKGEIFTKLPGNGLVIL 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + +             R              K+ +  +    T+           P
Sbjct: 218 NENSNDWLNWQQGSKCKTVWRFSLNKTDNVQFFATKIVSNLHSMYFTLHSPQGSCQVQLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  + NAL A+ L IA+G + + V   L K+  +PGR   +  +     I   Y   
Sbjct: 278 MLGKHNITNALAASALAIAVGANLSAVSLGLSKVKPIPGRLCPIQLDVGKLLIDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407
            NS+    + +  +    ++VV      G+++      +GK   
Sbjct: 338 VNSMIAAAQVLSEMPGYLVMVVGDMAELGEKEIKYHQQVGKFIA 381


>gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
 gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
          Length = 444

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 86/422 (20%), Positives = 157/422 (37%), Gaps = 37/422 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L  +    L+   + +           +S DSR I+   +F+A+ G + DGH ++
Sbjct: 1   MKLSTLASRLKGTLLGADAHY---------KGISVDSRSIKPHELFIALRGKQYDGHHYV 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA A VV            I ++ P+++V++TRK L   A     +    I+ +
Sbjct: 52  GEAQQHGAAAAVVEE---------VIETDLPLVLVEDTRKALGELAKHHRRQFSIPIIGL 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    ++ I    G         +               P+ L    +     
Sbjct: 103 TGSCGKTTTREMIRSILAEMGPVLANFKNFN----------NAIGLPLTLLHLTAEHR-- 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     +      TN+G  H+    +      AK  +F   L +
Sbjct: 151 -YAVIEMGANHAGEIDYLTHITQPDIALITNIGPAHLQGFGSILRVAEAKAEIFSG-LAQ 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+ A D +   + K +         +     F   +       +    +   G++ 
Sbjct: 209 KGVAILNAADNHRDILEKASAQYRRVNFGLTQNCDFYARQIQLDKTGRPTFLLVSSGEEI 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G+  V NAL AA +   +G++ +++   LEK+  + GR     T +    I  
Sbjct: 269 IIRLNLSGQHHVMNALAAAAVARQVGVEFSVIQSGLEKMQPLSGRVINRTTKTGATLIDD 328

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDLA-DIAIVT 416
            Y    +S+   LK +     G  I+V G   +  +        MG++A  L  D     
Sbjct: 329 SYNANPSSVAAALK-LLAHYKGLRILVLGDMSELGKSAGAYHRQMGELAKALTIDKVYTC 387

Query: 417 DD 418
            D
Sbjct: 388 GD 389


>gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
 gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
          Length = 453

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/409 (19%), Positives = 151/409 (36%), Gaps = 36/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+ Q         +  I  V +DSR ++   +FVA+ G + DGH + 
Sbjct: 2   MYLSEIAKATGGTLVGQ---------DVLIQSVGTDSRKLEPAQLFVALKGERFDGHDYA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +++GA A+++S               TP ++V++TR  L   A+    K    + A+
Sbjct: 53  RAVLSEGATAVLLSHDVGA----------TPAVLVEDTRLALGQLAAYWRSKFSIPVAAI 102

Query: 121 TGTSGKSSVASFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG++GK+SV   +  I +  +G     +     +++           P+ L         
Sbjct: 103 TGSNGKTSVKEMLAAILRVAAGADDAVLATQGNLNNDI-------GLPLTLL---RLHER 152

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V +  +  G   +     +       N    H+    + +    AK  +FE  L 
Sbjct: 153 HRYAVVEMGMNHAGEISYLTRIGRPDVALINNATAAHLGGLGSVEGVAKAKGEIFEG-LA 211

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A+I ADD+++         AG R +                      + +S    +
Sbjct: 212 DDGVAVINADDSFAGLW---QSLAGRRRIVRFGLNAGDVTAGYALHSAGCDLQLSTPAGE 268

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   + NAL A  + +++G+    V E L     V GR +          I 
Sbjct: 269 RALHLPVPGLHNIRNALAATAVALSMGVSLDAVAEGLAGFAGVKGRLQRKPGRHGALLID 328

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             Y     S+   +  + + +  R++VV   G  G+ +      +G  A
Sbjct: 329 DTYNANPASMRAAIDVLASHSGKRLLVVGDMGELGENEAALHAELGAYA 377


>gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 466

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 150/467 (32%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        +   +++  V  DSR ++ G +F A VG + DGH +  Q
Sbjct: 1   MIALSLAEIASVVGGQTHDIPDPSAQVHGPVVIDSRQVKDGSLFAAFVGERVDGHDYADQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++                  P +VV++ +  L   A  +  +    ++A+TG
Sbjct: 61  AVRAGAVAVLAQRPV-----------GVPAIVVEDVQTALGALARHVVRRLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R   + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLRRKAPTVFTPGSLNNEIGLPLTALTATEETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G   +  D      G   N+G  HI     ++    AK  L E  LP E 
Sbjct: 158 -VLEMGARGIGHISYLTDLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEA-LPAEG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+ ADD   + +  R           G         ++        +  +  G     
Sbjct: 216 AAILNADDPLVRAMASRTKAKVILFGESGEADVRAENVRLTDSGQPAFMLHTPSGASEVT 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           +              AA         + +     E   +   R E          +   Y
Sbjct: 276 MRLYGEHHVSNALAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTIVNDAY 335

Query: 363 AHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTD 417
                S+   L+ +  +  GR    V G     GD    +   +G++A+ L     +   
Sbjct: 336 NANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVG 395

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               S        E   G        +   A+      L   DV++V
Sbjct: 396 GREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 441


>gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 456

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 164/465 (35%), Gaps = 36/465 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +    + + +   +    + +  I   ++D+R ++   +F+ + G   +GH F+PQA
Sbjct: 1   MIKRTVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G  A++                   +++VD+T + L   A     +    ++ VTG+
Sbjct: 61  FEKGVSAVLWDR------SEPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +           G  +          L  P    +A            
Sbjct: 115 NGKTTTKDMLHAVLGTQYRVHKTAGNFNNH-IGLPLTVLAMPEDTEIA------------ 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S+ G         +  A   TN+G  H+    +++    AK+      L ++  
Sbjct: 162 VLEMGMSARGEIDFLSRLAEPEAAVITNIGESHMQDLGSREGIAEAKL-EIINGLREDGV 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
              + D+     +++                  + LK++         TI    + F   
Sbjct: 221 LFYFGDEP----LLREKAYTCRTTTYGEGADNDLRLKEIKQGEEGTYFTIDSIDRSFF-- 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   V NA+ A    I  GI        L +L V   R E V T +    +   Y 
Sbjct: 275 IPVLGRHNVMNAMGAYAAGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYN 334

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            +  S++  ++ I T+    + ++V G     GD ++      G          + T   
Sbjct: 335 ASPTSMKAAIELIETMKGYRKKMLVLGDMLELGDEEKVFHEECGAAINPAEIDHVFTYGT 394

Query: 420 PRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             +   +  R     G +  +++K   +EAIR   E     D+L+
Sbjct: 395 LGAFIADGARKHFEEGRVSHYLDKKELLEAIR---ENAASGDLLL 436


>gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
 gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
          Length = 457

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 152/461 (32%), Gaps = 40/461 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +     +      +   + +  DSR      +FV +VG K D H F+      G    + 
Sbjct: 10  IAATGGVLIFGNEDAVFSNIVIDSREANKNSLFVPVVGEKNDAHKFLESVYDAGCRVAIS 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S            + +  I++V++T K L      L  K    ++ VTG+ GK++     
Sbjct: 70  SRK------DIFSKPDFNIVLVEDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTTTREMT 123

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                   +        S +      +R+T                     + +  S  G
Sbjct: 124 ALALSDLKVFKTPNNFNSQLGVPVTISRITDEEI---------------GIIELGMSLFG 168

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +     +   +   TN+G  HI+   T++   + K  + + +    S   + AD+   
Sbjct: 169 EMERIAKIVGCDSAIITNIGTAHIENLHTKENIRSEKFHIMDGM-KAGSVVFLNADNDML 227

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
               KR         + G      +   +   +   + T  +  +       + GE QV 
Sbjct: 228 SNPPKREGIIYKFFSAKGNTDCDYYATDIVFHNAMPEFTAHICDRSIKVTLNVFGEHQVS 287

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NALVA  +     +D     +HL        R E +   +    I   Y  + +S++  L
Sbjct: 288 NALVALAVAHHYNLDIESASKHLSSFRGFSHRQELIELKNL-TVIDDTYNASPDSMKASL 346

Query: 374 KNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDPEKI 428
             ++   + R I V       G  +      +G+   +    D               ++
Sbjct: 347 SILKDFRARRKIAVLADMKELGADEVKFHREVGEFISENVKPDAVF---------SVGEL 397

Query: 429 RAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
             EI++    F +  +  EA+ +  +E L   DV +   KG
Sbjct: 398 AREIVNCTDIFGKSFDSNEALEKYLLEYLEDGDVCLF--KG 436


>gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 464

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 136/398 (34%), Gaps = 28/398 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+ + LS          +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIADILSGQLSGNGGVMVETTSTDTRQAVENGLFFALKGEHFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCVAVVVERECEI---------SVPQIVVQDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSS----FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           K++V     +I Q+  +      +  G  +            TP                
Sbjct: 112 KTTVKEMTAKILQKMTVCEDEVLYTFGNLNNDLGVPMTLLRLTP-------------QHK 158

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V + A+  G   +     +  A    N+   H++   + +    AK  ++  L    
Sbjct: 159 FAVVELGANHIGEIAYTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGG 218

Query: 242 SPAIIYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              +  A      +  + +    +     S          + V    +    T+     +
Sbjct: 219 KAIVNQAFYYPQWQKEIGEHELQSFSYTGSDQDSYADFWAENVELDLSGSHFTLHSPQGE 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P  G   V NAL A  L +A+G D   +   LE+   V GR   V  N     I 
Sbjct: 279 IEINLPYLGAHNVSNALAATSLAMAVGADLNAIKVGLEQRSQVKGRLYPVEVNQHCLLID 338

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
             Y    +S++  +  ++   + RI  V       D+ 
Sbjct: 339 DTYNANVDSMKSAVAVLKNYPAFRIFAVGDMAELGDES 376


>gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 464

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 135/394 (34%), Gaps = 20/394 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          V
Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  + +    +   + S          + V       + T+     + +  
Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   + NAL A  L +A+G     V   LE+   V GR   V  N     I   Y 
Sbjct: 283 LPYLGAHNISNALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEVNQHCLLIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              +S++  +  ++   + RI  V       D+ 
Sbjct: 343 ANVDSMKSAVAVLKNYPAFRIFAVGDMAELGDES 376


>gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           schoenbuchensis R1]
          Length = 473

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 174/470 (37%), Gaps = 41/470 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   L++ ++   +       + +S DSR +  G IF  I GN  DGH F  QA A+GA 
Sbjct: 6   DKQTLLSVMNGLSVGCLPETFSGISIDSRSLIEGDIFFCIKGNSLDGHDFAAQAYAKGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV    +    +       P++VV +  K L   A     +    I+AVTG+ GK++ 
Sbjct: 66  VLVV----AQNRLAEMKMLAAPLIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q     G     +G  +               P+ LA+  +        +   E 
Sbjct: 122 KEALKQALGTVGRVYANLGSFNNCWGV----------PLTLARMPAD-----SDYGIFEI 166

Query: 190 SSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +  D+ R  +  ++      T++   HI + +  +   +AK  +FE  L  E  A++ 
Sbjct: 167 GMNHKDEIRPLVKLVRPHVALITHIAAGHIGFFKNLEEIADAKAEIFEG-LDDEGVALLN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           AD  +   ++++A   G + +      QG     K++  + +   +T+    +D      
Sbjct: 226 ADSHFFSRLVQKAEQCGVKKILSFGESQGANYQAKEIHLLTDCSCMTMHFSNQDITVKIG 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVD 361
            PG   V N L    +C  +G D   V   L    +  GR      +         I   
Sbjct: 286 APGRHIVQNILGVLAVCDVVGADLTRVSLALNCFSLPKGRGNRYRLSLPNGGEFHLIDES 345

Query: 362 YAHTSNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAI 414
           Y     S+   L         T GR I + G   +     ++  R ++  I +  A+   
Sbjct: 346 YNANPASMRAALDLLAAGPVGTRGRKIAILGDMLELGVYSEKLHRDLVKPICISGANPVF 405

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +           K  A+ +             E +   ++ +++ D++++
Sbjct: 406 LVG------KAMKFLADELSTYIKVYYSEYIEELLPLILQEISEGDLIMI 449


>gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 464

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 134/394 (34%), Gaps = 20/394 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +      +   S+D+R      +F A+ G   D H ++  A+ 
Sbjct: 1   MIKLTTNEIAGILNAQLIGDGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV     +         + P +VV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVERECEI---------SVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+          T+                      L          V
Sbjct: 112 KTTVKEMTAKILQKM---------TACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVV 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   + +    AK  ++  L       +
Sbjct: 163 ELGANHIGEIAYTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIV 222

Query: 246 IYADDAYSKE--VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A      +  + +    +   + S          + V    +    T+     + +  
Sbjct: 223 NQAFYYPQWQKEIGEHELQSFSYIGSDQDSYADFWAENVELGLSGSHFTLHSPQGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   V NAL A  L +A+G     V   LE+   V GR   V  N     I   Y 
Sbjct: 283 LPYLGAHNVSNALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEVNQHCLLIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
              +S++  +  ++   + RI  V       D+ 
Sbjct: 343 ANVDSMKSAVAVLKNYPAFRIFAVGDMAELGDES 376


>gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
 gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
          Length = 476

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 85/489 (17%), Positives = 162/489 (33%), Gaps = 55/489 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  +    +     I     + R+I     DSR ++  ++F+ + G K DGH FI
Sbjct: 1   MK--NMTLEHIAAVCGGTYIGNEADKTREIQGAVIDSRLVEKDYLFIPVRGEKVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P    +GA A++                  P ++V+NT   +   A+         ++ +
Sbjct: 59  PSVFEKGALAVLSEEKLENPAG--------PYILVENTLDAMKKIAADYRRGLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +        G  +               P+ + K        
Sbjct: 111 TGSVGKTSTKEMIASVLAQKYNVLKTEGNLN----------NEIGLPLTIFKIREE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  S  G                TN+G  H++   T+     AK   F  L P 
Sbjct: 158 QVAVLEMGISEFGEMDRLSTMANPDICVITNIGLCHLENLITRDGILKAKTESFAHLTPD 217

Query: 241 ESPAIIYADDAYS------------KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-N 287
               +   DD                 + K A  A     +     K ++   V A+   
Sbjct: 218 GIAVLNGDDDKLCDKKVVNGKPAVFYGIEKAAKVAETEEGTKTLAEKTVYATNVEAVDLT 277

Query: 288 KQQVTISVEGKD------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +  I    K+       +   P+ GE  VYNAL A  +   +G+    +   +E +  
Sbjct: 278 GTKAAIHYPSKETGGEVTMEVTIPIAGEHNVYNALAAVSVARELGLTCDEMKRGIESVQT 337

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGK 398
           + GR   +  N         Y     S++  +  +     GR I V G  G+    ++  
Sbjct: 338 IGGRSNLIHKNGITIIDDC-YNANPVSMKASIDVLSN-APGRKIAVLGDMGELGAEEKQL 395

Query: 399 RPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEM 455
             ++G+  A    D              ++I   +             ++ + I+  ++ 
Sbjct: 396 HYMVGEHFAGKGIDALYCV-----GTLSQEITKAVRANSSATEVHHYEDKADLIKDLVKE 450

Query: 456 LNKQDVLVV 464
           +   D ++V
Sbjct: 451 VKSGDTVLV 459


>gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016]
 gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 474

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 80/470 (17%), Positives = 168/470 (35%), Gaps = 36/470 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ + + D    ++   I   +++  K   +S+DSR +Q G IF+A+ G K +G+ ++  
Sbjct: 12  LEHMSFDDIVRAVSGKVILKGKYKGHK--NISTDSRKLQKGDIFIALKGEKFNGNEYVES 69

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA   +V     ++  S  I   T I+ V N    L   A     K    I+ VTG
Sbjct: 70  ASKKGASICIVD---EVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTG 126

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +  +           G  +                          +S  V
Sbjct: 127 SVGKTTTKDIIAAVLGVKFKVFKTEGNFNNQIGLP-------------HMLFKLDNSYEV 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +  G   + +   +      TN+ R HI    +++   NAK+ + +    + +
Sbjct: 174 AVLEMGMNQRGEIHNMVKAARPDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENT 233

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I    D      ++  +    RV          +   V     + +V  +    +  F
Sbjct: 234 LII--NSDNDLLSTLEEKNFTLNRVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERF 291

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           L  +PG++ + N+L+A      + +    + E ++ + +   R E +            Y
Sbjct: 292 LINMPGKYNIVNSLLAISCGRLLNMSYDEIREGVKNIKLTSMRMEIIRKKEFTIINDC-Y 350

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
                S++  +  ++   S R I V G     G+        +G  A +  DI ++    
Sbjct: 351 NANPESMKAAIDVLKEFKSNRKIAVLGTMGELGEEAYKMHQEVGMYAGEK-DIDLLIGIG 409

Query: 420 PRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +D E+            G   + +  +        ++ + + D ++V
Sbjct: 410 EYKKDFERGFKSTNKKGNFMGFDKYEDLKD------FILKYIERGDTILV 453


>gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
 gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 453

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 145/403 (35%), Gaps = 35/403 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   E+        +   +  I EV++D+R   AG +F+AI G + D H F+  A+ 
Sbjct: 4   LTLQQLAEITGGT----LYGSDGAIAEVTTDTRKATAGNLFIAIKGERFDAHDFVADAVT 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G   ++VS    ++            +VV +TR  L   A+ +  +    I+A+TG+SG
Sbjct: 60  AGCSGLLVSQRLPVE---------VSQVVVADTRIALGQLAAWVRQRSEARIVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I ++ G + +  G  +               P+ L              +
Sbjct: 111 KTSVKEMTAAILRQCGETLYTAGNLN----------NDIGVPLTLL---RLKPQHQYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +  D ++       NL   H++   +      AK  +F  L    +  I
Sbjct: 158 ELGANHQDEIAYTTDLVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAII 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + +             R           +   V         T+     + D   P
Sbjct: 218 NSDSNDWPHWQSALHGKTVWRFSPDRQADSDFYASGVTLSAQGTHFTLHSPQGEVDVTLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL A+ L +++G   + V + L  L  VPGR   +  ++    +   Y   
Sbjct: 278 LPGRHNIANALAASALALSVGAPLSAVCQGLSTLKAVPGRLFPLALSADKLLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             S+    + +  +   R+++V         G    MG  A +
Sbjct: 338 VGSMTAAAQVLAEMPGYRVMIV---------GDMAEMGAEAAE 371


>gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 460

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 173/474 (36%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   ++ I + +       G  ++              P+ + +        
Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ----------IGLPLTILEMKRDTE-- 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E       Q R                              AK +L      +
Sbjct: 165 ---FLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLR 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E+   +Y  D     ++ R +           +     L       ++  V   +     
Sbjct: 222 ENGLFLYNGDE---PLLSRNNKTSSVNCKTFSEKDTNDLFPTNVQLDEYGVHFKLNHTKI 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+        I  
Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKIGFTIIND 338

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + I+V G     G + +     +GK+  +     + T
Sbjct: 339 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFT 398

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  E +  E      I       N+ E     ++++ + DV+++  KG
Sbjct: 399 ----YGELAEFVAEEARKNYHIGKVQSFDNKAEIAEEVLKIITQNDVVLL--KG 446


>gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2866]
          Length = 457

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 161/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA+A
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA  +VV    S            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGAVTVVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 455

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 148/475 (31%), Gaps = 41/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VD+    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H L  +     +   +  +        +           + L +
Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEITDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+   A               +            T ++   + 
Sbjct: 214 DGEFIYNGDEPLLQERAKKLDQAKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     GR I V G   +  +    +   ++  L D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDGGRRIAVLGDMLELGKNSPALHAGLSDTL-DPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   +          +  K      I      +   D++V+  KG
Sbjct: 389 VYLYGSEMKNLYDALQDKYKPEHLHYYTKDQMDRMIDDLKNDIKSDDIVVL--KG 441


>gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 455

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 150/474 (31%), Gaps = 52/474 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
            +F  ++  + +   +     I  V+ D R +Q G  FVA VG + DGH F+ +A  +GA
Sbjct: 7   ANFVHVVGGIPVI-HEAPNVTITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDEAFRRGA 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV+                P + V N  + +   A     +    ++ +TG++GK++
Sbjct: 66  SVAVVTEDVKTALG--------PCIRVQNALQAVQALARWERDQFEGPVVGITGSNGKTT 117

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V  +                    + +       P+ + +  +   +       +E
Sbjct: 118 TKEMVAAVLSA----------IGPCVYTSANQNNELGLPLTILQRDASHRAM-----VLE 162

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIY 247
               GL Q                   +            A  +      LPK+  A++ 
Sbjct: 163 MGMRGLGQIEELCTIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPKDGMAVLN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD + + +  +       +     +G  I    V          +            L 
Sbjct: 223 GDDPWLRRM--QHRTTARILWYGMSEGCDIRATSVAWSQEGMSFEVDTPHGTATMRIRLL 280

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL A  +   +G+    + + L ++    GR   V     G    +D A+ ++
Sbjct: 281 GQHNVMNALAAIAVGQTLGLSLEDIEKGLGRVEAQRGRLRLV---DAGDVTVIDDAYNAS 337

Query: 368 S---LEMILKNIRTITSGRIIVVFGCG---------GDRDQGKRPIMGKIALDLADIAIV 415
                  +    R    G  + V G             RD G+R     +A    D  + 
Sbjct: 338 PSSVAASLEVLERIARPGHRVAVLGDMLELGEMAVQAHRDVGRR-----VASAGVDRLLC 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                     E  RA    G+P         E + +    L   DV++V A +G
Sbjct: 393 V----GELAAEMARAAEEAGVPEVRHFNGLEELLASVRSYLQPGDVVLVKASRG 442


>gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 459

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 130/393 (33%), Gaps = 21/393 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     +L + L    +   E  +  VS+DSR  I  G +F A+ G   D H ++ +A+
Sbjct: 1   MITLSLSQLASILDAQLLGDGELTVENVSTDSRQSISKG-LFFALKGEHFDAHHYLDKAV 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            QG  A VV    +              LVV +TR  L   A  L  K     +A+TG+S
Sbjct: 60  EQGCIAAVVERQTNSP---------IAQLVVKDTRLALGQLAKWLREKINPKTVAMTGSS 110

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+++      I Q+S +    +  T    +      LT                     
Sbjct: 111 GKTTIKEMTAAILQQSAVDFDDVLFTHGNFNNDIGVPLTLL---------RLTEQHKFAV 161

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +     +       N+   H++   +      AK  ++   L     A
Sbjct: 162 IELGANHIGEIAYTTALAQPDVALVNNVAAAHLEGFGSLDGVATAKGEIYRG-LTSNGTA 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II     Y ++      +   +  +        + + +          +           
Sbjct: 221 IINLAHNYQQKWQAEIADHSVQYFAYDNPKADYYAENIVFSEQGASFLLHTPKGSIQIHS 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              GE  V NAL A  L + +G     V   L     V GR   +        +   Y  
Sbjct: 281 SYLGEHNVSNALAATALAMNVGASLQDVQNGLAMKSQVKGRLFPIEPCENLLLLDDTYNA 340

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
             +S++  +  ++   + R+ VV       D  
Sbjct: 341 NVDSMKSAISVLQKYPAFRVFVVGDMAELGDNT 373


>gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 472

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 168/450 (37%), Gaps = 41/450 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + VS DSR + AG +F  I G+  DGH F   A AQGA  +VV+     +    T    
Sbjct: 26  FSGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHAYAQGAGVLVVAQNRLDEMKKITA--- 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV +  + L   A     +    I+A+TG+ GK++    ++Q  +  G     +  
Sbjct: 83  -PLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKTTTKEALKQALETVGKVHANLAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207
            +               P+ LA+           +   E   +  ++ R  +  +     
Sbjct: 142 LNNCWGV----------PLTLARM-----PIDSDYGIFEIGMNHKNEIRPLVKLVCPHVV 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   H+++ +  +   +AK  +FE  L K   A++ ADD +   ++K+A   G + 
Sbjct: 187 LITRIAAGHMEFFKDLEEVADAKAEIFEG-LDKNGIALLNADDHFFSYLLKKAKQCGVKE 245

Query: 268 L--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +            +K+V  + N   + +  + KD       PG+  V N L     C  +
Sbjct: 246 IRSFGRSNSADYQVKEVHLLENCSCMVVHFDQKDMMIKIGAPGQHMVQNGLSVLAACDTV 305

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEMILK---NIRT 378
             D A V   L +  +  GR                I   Y     S+   L        
Sbjct: 306 CADLAHVTLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMRTALDLLATGPI 365

Query: 379 ITSGRIIVVFGCG---GDR-DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
              GR I + G     GD  ++  R ++  I +  AD+  +       ++   + +++  
Sbjct: 366 GVGGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLV-----GKEMGVLASDLSA 420

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +       N  E +      ++  D++++
Sbjct: 421 YVT-VYHAENIEEIVPLVFSEISNGDLIMI 449


>gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
 gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
          Length = 457

 Score =  130 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 160/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S          + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK    K +         T+     + +   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G     V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  ++   + RI+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKGYDAFRILCVGDMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   +         E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVSGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 455

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 121/410 (29%), Gaps = 37/410 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +FV I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  + +  +           +L V +T K +   A     K    ++ +
Sbjct: 54  GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE--------------IGVPMTILEMKPI 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +     +   +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     ++        +  S         +               + G D 
Sbjct: 214 DGEFIYNGDEP----LLAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDEEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGK 404
            Y     +++ +  +   +     GR I V       G R       +  
Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
 gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
          Length = 452

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 167/466 (35%), Gaps = 36/466 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    ++  +  ++ V++D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSQLAGILGG-ELKGDDLTLDAVTTDTRKLTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS              + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDC---------DLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            T                    +
Sbjct: 111 KTSVKEMAAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  ++   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            V    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGDRKVWRFSANAADSDFTATNVHVTSHGTEFTLQTPVGSIDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +A G   A +   L  L  VPGR   V        +   Y   
Sbjct: 277 LPGRHNIANALAAASLSMAAGAPLAAIKAGLANLKAVPGRLFPVQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
             S+   ++ +  +   R++VV      G   +     +G  A     D  + T      
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHLQVGNAAKAAGIDRVLSTG----- 391

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               K+   I           ++   I     ++ +Q ++ +  KG
Sbjct: 392 ----KLSQAISEASGVGEHFADKTALIARLKALVEEQQMITILVKG 433


>gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
 gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
          Length = 470

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 156/451 (34%), Gaps = 42/451 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I +G  F AI G++ DGH +   A+A GA  +VVS A       A  R  
Sbjct: 17  ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VVD+    L         +    I+AVTG+ GK++    ++ +   SG     +  
Sbjct: 73  VPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+              V  +  G  +  +  I+      
Sbjct: 133 FNNHWGV----------PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVAMIRPYVAVI 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   ++ +    AK  +FE L P     +   +D ++             + S
Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   K    L +         + +++ G+  +     PG     NAL A G+   +G D
Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD--YAHTSNSLEMILKNIRTITS-- 381
               +  L  L    GR +    +     G    +D  Y     S+   +  +       
Sbjct: 300 MEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359

Query: 382 -GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            GR I V G   +     ++    + G +     +   +   +          A +   +
Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGAD---------MAALKESL 410

Query: 437 PGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
           P  +    R    E     +  +   DVL+V
Sbjct: 411 PESVHVEYREKTSELTEYVLNSVAPGDVLMV 441


>gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20]
 gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae
           Rd KW20]
          Length = 457

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 89/466 (19%), Positives = 160/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ ++++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S          + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK    K +         T+     + +   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G     V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  ++   + RI+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKGYDAFRILCVGDMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   +         E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVSGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
 gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
          Length = 468

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 140/390 (35%), Gaps = 19/390 (4%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DSR I++G IF A+ G + DGH ++  A   GA   VV+  +  +   +  +    
Sbjct: 31  SVSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCAVVNREWYSRHAESVHQEGWR 90

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            LVV +T + L   AS    K    ++ + G++GK++             +++  +G T 
Sbjct: 91  YLVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKE----------MTAAVLGTTY 140

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +     +       P+ L        +  +  V +  +  G  +      +      TN
Sbjct: 141 KVHMSKGNLNNHLGVPLTLFGLRD---THDLAVVEMGINHPGEMELLTSIARPDFALLTN 197

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G +H+++         A+  L+ + + +     +   DA       R            
Sbjct: 198 IGHEHLEFLGDLDGVAEAETVLYHDTIMRGGTVFVNTGDARLLA-AAREIQNRVDYGPER 256

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                   K V     +   T+         +    G   V NA+ AA +     +    
Sbjct: 257 DGNLIWPEKIVLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVAAAAVGSCFNVPLNA 316

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFG 389
           + E L  L    G        + G RI+ D Y    +S+ M LK +  I   GR ++VF 
Sbjct: 317 IAEGLGSLVPADGWKRLEFIEAGGIRIFNDTYNANPDSVTMALKTVCEIPCSGRRVLVFA 376

Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVT 416
                G+    +   MG +   L   A+ T
Sbjct: 377 DMLELGEVSDAEHRRMGALVAQLPFDAVYT 406


>gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
 gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score =  130 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 158/469 (33%), Gaps = 42/469 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  K+  E      +         + ++  +S+  + G +FV I+G++ DGH FI  A+
Sbjct: 43  DITVKNILEATGG--VLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESAL 100

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A A + S      +    + S+   + VD+T K L      +  ++   ++AVTG+ 
Sbjct: 101 QV-AAATLTS------EHDNVVVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSV 153

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +              G  +++             PI +++            
Sbjct: 154 GKTTTREMITAAVSAGMKCFHTEGNYNSVY----------GEPITVSRMTDE---YDAAV 200

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G      D  +      T +G  HI+Y  + +     K+ + + +    +  
Sbjct: 201 LELGIGEPGEMDILTDIAQPDICVVTTIGVAHIEYMGSLENTRKEKLSIIKGMGKNGT-- 258

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +    D      +K            G  G       +          +           
Sbjct: 259 LYINGDDPMLYAVKDEIPCKVYTYGCGE-GMDFRATNIRMEDGYSIYDMVHGDDVVTVKV 317

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   V N+LVA  +   +G+      +  E       R + +    +   I   Y  
Sbjct: 318 GVMGLHNVRNSLVAMAVSHQLGVPYEKSSKAFENFRG--LRQKVIKLPGKYTIIDDTYNA 375

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDN 419
           + +S++     +  +   GR  +V G     GDR       +G+       D  IV    
Sbjct: 376 SPDSMKASTDVLCDMKCEGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVI--- 432

Query: 420 PRSEDPEKIRAEIIHGIPGF---IEKGNRIE-AIRTAIEMLNKQDVLVV 464
              E  +KI+  +      +   +   +  E AI   + ++  +D++++
Sbjct: 433 --GEHAQKIKEALDECDTKYAKTVSFTDTEEIAI-YLMALMKPEDIVLL 478


>gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
          Length = 455

 Score =  130 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 146/475 (30%), Gaps = 41/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VD+    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H L  +     +   +  +        +           + L +
Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEITDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+                   +            T ++   + 
Sbjct: 214 DGEFIFNGDEPLLQERAKKLDQVKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     G  I V G   +  +    +   ++  L D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGKSSPALHAGLSDTL-DPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   +          +  +      I      +   D++V+  KG
Sbjct: 389 VYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRMIDDLKNDIKPDDIVVL--KG 441


>gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 287

 Score =  130 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 7/235 (2%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           F  L+N           + IN ++  S+ +  G +F +I G  EDGH +I +AIA+GA A
Sbjct: 5   FDTLMNLSIKHIFGPASQTINYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGAVA 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSS 128
           +   ++       +T  S+   L VD+ RK ++ F+   +    E    + VTGT+GK++
Sbjct: 65  VF-GTSIEKLRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTT 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFA----QDNRLTTPSPIYLAKALSYLSSQGVTH 184
           VA++V+ +     L +  IG T   SS      + +  TTP  + L K    L ++G   
Sbjct: 124 VAAYVRSLLTLLKLPTGSIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEA 183

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +E SS  +DQ R++ I       TNL  +H++YH+T + Y   KM+LF++   
Sbjct: 184 AVMEVSSIAIDQQRVENIYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQQAKH 238


>gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 461

 Score =  130 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 165/469 (35%), Gaps = 33/469 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I  +  ++   L    +      I  VS+D+R      +F A+ G K DGH ++ +A+A
Sbjct: 1   MIKLNVKKIAQILKAKLIGEETLTIESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P LVV +TR  L   A+ L  +     +A+TG+ G
Sbjct: 61  QGCTAVVVDHPCEI---------DVPQLVVKDTRLALGRLAAWLRRELEPLTVAITGSCG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I QR        G    +     +       P+ L              +
Sbjct: 112 KTTVKEMTAAILQR------TAGDDEAVLFTEGNFNNDIGVPLTLL---RLTEKHEYAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +             N+   H++   + +    AK  ++   L  +  AI
Sbjct: 163 ELGANHAGEIAYTAHLTMPDVALVNNVSAAHLEGFGSVEGVAQAKGEIYSG-LTPDGVAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D  Y+       ++      +  + G   + +K+       + T++          P
Sbjct: 222 LNLDSNYAHYWGGDINDREFESFAYDHVGADYYAEKIMLSEYGSRFTLNTPKGAIKIELP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+  V NA+ A+ L + +G     +   LE    V GR   +  ++    +   Y   
Sbjct: 282 YLGKHNVANAVAASALAMNVGASLEDIKRGLENPSHVKGRLFPIQLSTNLLLLDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             S++  +  +        I  FG     GD        +   A       +VT      
Sbjct: 342 VASVKSAISVLSDYREAFRIFAFGDMAELGDETISCHQEVADFAKAANLDLVVT-----Y 396

Query: 423 EDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                + ++   G+          +  E I    ++   +D++++A KG
Sbjct: 397 GSESAVVSKACGGVHFSNKEALIASLKEIISH--QLKENEDIVLLA-KG 442


>gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555]
 gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555]
          Length = 463

 Score =  130 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 156/442 (35%), Gaps = 34/442 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S+DSR +Q G IF+A+ G K +G+ ++  A  +GA   +V     ++  S  I   T
Sbjct: 27  KNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKGASICIVD---EVKFESEKISEFT 83

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I+ V N    L   A     K    I+ VTG+ GK++    +  +           G  
Sbjct: 84  TIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTKDIIAAVLGVKFKVFKTEGNF 143

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                          +S  V  + +  +  G   + +   +      T
Sbjct: 144 NNQIGLP-------------HMLFKLDNSYEVAVLEMGMNQRGEIHNMVKAARPDIAVIT 190

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ R HI    +++   NAK+ + +    + +  I    D      ++  +    RV   
Sbjct: 191 NVLRAHIGNLGSRKNILNAKLEITDFFSKENTLII--NSDNDLLSTLEEKNFTLNRVGLG 248

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  +   V     + +V  +    +  FL  +PG++ + N+L+A      + +   
Sbjct: 249 ENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAISCGRLLNMSYD 308

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E ++ + +   R E +            Y     S++  +  ++   S R I V G 
Sbjct: 309 EIREGVKNIKLTSMRMEIIRKKEFTIINDC-YNANPESMKAAIDVLKEFKSNRKIAVLGT 367

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442
               G+        +G  A +  DI ++       +D E+            G   + + 
Sbjct: 368 MGELGEEAYKMHQEVGMYAGEK-DIDLLIGIGEYKKDFERGFKSTNKKGNFMGFDKYEDL 426

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +        ++ + + D ++V
Sbjct: 427 KD------FILKYIERGDTILV 442


>gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, putative
           [Chlamydophila psittaci 6BC]
          Length = 436

 Score =  130 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 165/456 (36%), Gaps = 39/456 (8%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           LS        +KI+ V+ DSR ++ G +F A+ G   DGH F+ QA   GA A VVS  Y
Sbjct: 2   LSNVKYPRSGKKISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDY 61

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
               F         ++VV++T + L              I+ +TG+ GK++  +F +   
Sbjct: 62  QGDSF------GLELIVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFL 115

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                           S  + +++LT P  + +A             + +  S     Q 
Sbjct: 116 SSVYRV--------YASPKSYNSQLTVPLSLLMADGDEDFVI-----LEMGVSEPKNMQD 162

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            L  ++      TN+   H+     Q     A+      +L      ++  D  +    M
Sbjct: 163 LLSIVEPEVAVITNIADQHVMNFPDQGVQGIAE--EKSHILRNSRVQLLPKDSPWYSYFM 220

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K++ +A     +   +    + K +        V IS    D DF    P +    N L+
Sbjct: 221 KQSVSAEKFSFAFYDETADFYYKAIRK----DSVVISTPEGDIDFAVAFPYKPAYSNLLI 276

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +  L   + +    ++     L + P RFE    N     I   Y     ++   L  I 
Sbjct: 277 SLSLAWLLDVPVDRIIHSCCDLQLPPMRFEQSVRNGI-QIINDAYNACPEAMIAALDAIP 335

Query: 378 TITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             +  G++I++ G     G+  +    ++   AL  A I          E    IR  + 
Sbjct: 336 NPSEGGKVILILGHMAELGNHSEEGHTVVANKALSKASIIFFI-----GEKWLPIRHLLK 390

Query: 434 HGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           H         +  + I   ++  + + D++++  KG
Sbjct: 391 HDTCEVSFYPS-AQGIEEILKKVVQQGDIVLL--KG 423


>gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
 gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
          Length = 476

 Score =  130 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 155/478 (32%), Gaps = 48/478 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR    G +FVA VG + DGH F  +
Sbjct: 1   MIALSLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFVGERVDGHDFAAR 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A++ S                P +VV++ +  L   A  + G+    ++A+TG
Sbjct: 61  VVEAGAAAVLASRPV-----------GVPAIVVEDVQAALGALARHVVGRLGTTLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLQRHGPTVFTPGSLNNEIGLPLTALTATEETKFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240
             + + A   G  ++         G   N+G  HI     ++    A  ++        +
Sbjct: 158 -VLEMGARGIGHIRYLTGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+ ADD   + +  R                     ++     +    +       
Sbjct: 217 GGAAILNADDPLVRAMASRTKAKVILFGESDEADVRAENVRLTDSG-QPSFRLHTPSGAC 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +   +G+ +  +   L +       R E          + 
Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGMPADEIARALSEAGSLSRWRMEVTERPDGVTVVN 335

Query: 360 VDYAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409
             Y     S+   L+             GR   V G     GD    +   +G++A+ L 
Sbjct: 336 DAYNANPESMRAALRALAAMGKASQAKGGRTWAVLGKMAELGDEALAEHDAVGRLAVRLN 395

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  V       E           G      +   +   A+      L   DV++V
Sbjct: 396 VSKLVAVG----GREAAWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 449


>gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 462

 Score =  130 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 159/468 (33%), Gaps = 44/468 (9%)

Query: 11  FPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             ELIN             I   V +DSR +  G  FV + G   DGH F+ +A  +GA+
Sbjct: 5   LSELINLWGYPAEGKLSNNILGPVFTDSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAK 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A VVS      D +  I  N     VD+T +     A     +    ++AVTG+ GK++ 
Sbjct: 65  AAVVSK-----DSTVQIPENLICWRVDDTLQAYQQLALLHRQRLSIPVVAVTGSVGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +       G  +      +          +  P  I         +      + +E 
Sbjct: 120 RELITACLTTLGAITSTSDNNNND--------IGVPQTI-------LQADFSDAALILEM 164

Query: 190 SSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           +  GL + R             TN+G  HI    +++    AK  +   L P  +  I  
Sbjct: 165 AMRGLGEIRRLSCCSNPDIAVITNIGNAHIGRLGSRKNIAIAKCEITTCLNPSGTVIIPA 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--- 304
            D      + ++      RV  +    +      +          + +            
Sbjct: 225 GDPLLDSILSEKWPGRIIRVGLMPLGEEHTSASYIKKNAVDLLGVLDLNNNSLSVDKEAL 284

Query: 305 --PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             PL G     N ++A  + + +GI  + +     K              + G    +D 
Sbjct: 285 TLPLEGMHNAVNFMLAIAVALELGISLSNMNNLHVKTPCG-----RNSCFTYGNLTVLDE 339

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVT 416
            Y  +  S++  L  + T   GR   V G     GD       ++ + A+DL+ D  IV 
Sbjct: 340 SYNSSPESVKASLDLLVT-KPGRHFAVLGTMFELGDESIKFHSLIMQHAVDLSLDGVIVV 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D    E+ E + A +   +P F       EA+     +L   D L++
Sbjct: 399 SD---GEEAEAMVA-VGKQLPNFSIFSQPEEALPYLQSILKPGDNLLL 442


>gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 358

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 13/243 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   + +  +    ++  +  ++ +S DSR ++ G  F A+ G   DG  FI  A+A+G
Sbjct: 19  AKSILQCLVSIEPIAVRGADVTVHSLSYDSREVREGAAFFALPGVHTDGSKFIDAAVAKG 78

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSG 125
           A  ++              +++   + V + R  ++  A+  + +  ++   + VTGT G
Sbjct: 79  AVTVIHEKPLPA------YQAHICYVQVPDVRAAMAAAAAAFFDEPSQDLITIGVTGTEG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST---ISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           K+S   F+ Q+ + +G  +      S        A     TTP  I + + L+ +   G 
Sbjct: 133 KTSTVDFIWQLLRLAGKKAGFSSTVSFSLGDEPVANPAHQTTPESITVQERLARMRDNGC 192

Query: 183 THVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  VEASSHGL     RL  ++  AG F N+ ++H+++H T + Y   K  LF  L   
Sbjct: 193 EYAVVEASSHGLSPRTARLLHVRFDAGIFMNVTQEHLEFHGTFEQYRYDKANLFRALDTH 252

Query: 241 ESP 243
              
Sbjct: 253 AHK 255


>gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
 gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
          Length = 455

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 170/465 (36%), Gaps = 36/465 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L+   F E++  +           K N VS+D+R I    IF+A+ G+  + + +I +A
Sbjct: 2   ELLK--FEEIVEAIHGKIHINSNCHKYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA   +V      ++    ++ NT +++V NTRK L   A     K    ++ +TG+
Sbjct: 60  SKKGANLCIVDEIKFNEN---DLQKNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S                   G  +                I L   +  L +    
Sbjct: 117 TGKTSTKDLTAAALSSKFKVFKTQGNFNNE--------------IGLPLMIFNLDNTYDI 162

Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V     S   + HRL  + +      TN+G  HI+  +T++    AKM + +       
Sbjct: 163 AVLEMGMSDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSI 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   +D     +   + +    +     +G       +    N  + T+    K+  F
Sbjct: 223 LIVNNEND----LLKDISSDDYKVISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  + N+L+A      + I+   + E ++ L V   R + V            Y
Sbjct: 279 NIPVPGKHNILNSLLAIAAGRVLNIEYDKLKEGIKNLSVTSMRLDIVKGKKFTIVDDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             + +S++  +  + TIT  R I V G     G         + + A       ++T   
Sbjct: 338 NASPDSMKAAIDVMNTITGKRKIAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITV-- 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E  E  +         F    +   A       +NK D+++V
Sbjct: 396 --GEFNEAYKEGFNKNSKQFETIED---AAEFTTNNINKDDIILV 435


>gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 451

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 151/467 (32%), Gaps = 42/467 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +   + +    L   L   P     + I  + +D+R +Q G IF+A+ G K DGH F+
Sbjct: 1   MTVTATLSQLAAVLSASLVNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +GA A +V               + P++ V NT       A    G+    ++ V
Sbjct: 61  EMAITRGAVAAIVD--------YTYNYPDLPVIKVSNTLNAYQELAKWWRGQFGIPVIGV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +    G      G          +N +  P  +         +  
Sbjct: 113 TGSVGKTTTKELIAAVLGTRGKVHKTHGN--------FNNEIGVPKTLLELSQGDDFA-- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G         K   G  TN+G  HI+   + +             +P 
Sbjct: 163 ---VIEMAMRGRGQIAELTHIAKPNIGVITNVGTAHIELLGS-EQAIAEAKCELLAEMPN 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +S A++  D+       K+  +                L               VE    
Sbjct: 219 DSVAVLNYDNPLLMATAKQVWSGEVISYGFSGGDIQGKLVDYQ----------KVEVGGM 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G     N L A  +   +G+D   +LE    + +  GR +          +  
Sbjct: 269 TLPLPLAGVHNGSNFLAALAVAKVLGVDW-KLLEAGINVTMPQGRSQSWKLPRDIMILDE 327

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416
            Y     ++   L+ +      R I V G     G+R       +G+    L  D  +V 
Sbjct: 328 TYNAAPEAMLAALELLAQTPGRRKIAVLGAMKELGERSTKLHQQVGETVKKLNLDGLLVL 387

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D P   D E I      GIP      N  + +      +   D L+
Sbjct: 388 VDGP---DAETIVTS-AQGIP-CERCHNHSDLVSLLKTYVQPGDRLL 429


>gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
 gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
          Length = 459

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 156/408 (38%), Gaps = 33/408 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL  +L+   +   +  I+ VSSDSR + +  +FVA+ G+  DGH F   A+ 
Sbjct: 1   MIRVSLAELATRLNGQLIGD-DLPIDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V            +  +   +VV N+++ +    + +  +     +A+TG++G
Sbjct: 60  AGANALLVERE---------LPIDAAQIVVANSQRAMGEIGAYVREQLAPTCVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SV   +  I  +     +  G   + I       RL       + +  +  + +    
Sbjct: 111 KTSVKEMIATILSQQHRVLYTAGNFNNEIGVPLTLLRLKQGDEFGVFELGANHAGEIDYT 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +   S  +                N+   H++   + +    A        +     A
Sbjct: 171 SGLVKPSVAM--------------VNNVASAHLEGFGSLEGVAKA-KSEIFNHVTVGGTA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDF 300
           +I ADDA++  +++ + +       V  +            +   + +   ++    +  
Sbjct: 216 VINADDAFADVMLQASSHVKQLCFGVKNEASRDLDVFATDLIADSYGRYAFSLCYGAEVH 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G  QV NAL A  +C+A+G+  A + + L +L  V GR        R   I  
Sbjct: 276 RVELPLAGRHQVSNALAATSICLALGLSLAHICQGLSQLKPVKGRM-LPSVLGRVTVIDD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            Y     S+   +  ++ I   R +V+   G  GD        +G +A
Sbjct: 335 SYNANPASVGAAIDWLQEIKGNRCLVLGDLGELGDNAALLHRELGALA 382


>gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 477

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 152/448 (33%), Gaps = 38/448 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I  G  F AI G++ DGH +   A+A GA  ++VS A       A  R  
Sbjct: 26  ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMAMANGASLLIVSEA----RLPAMGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++    L         +    I+AVTG+ GK++    ++ +   SG     +  
Sbjct: 82  VPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA               V  +  G  +  +  I+      
Sbjct: 142 FNNHWGV----------PLTLA---RMPEDTDYGVFEVGMNHPGEIRPLVAMIRPDVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   +  +    AK  +FE L P     +   +D ++             + S
Sbjct: 189 TTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGIEHIHS 248

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   K    L +         + +++ G+  +     PG     NAL A G+   +G D
Sbjct: 249 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAALGVVRIVGAD 308

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMIL---KNIRTITSG 382
               +E L  L    GR +       GG   +    Y     S+   +           G
Sbjct: 309 MQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALLAASEPTGRG 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALD-LADIAI--VTDDNPRSEDPEKIRAEIIHGIPGF 439
           R I V G            MG+ A     D+A+  +              A +   +P  
Sbjct: 369 RRIAVLGDML--------EMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPES 420

Query: 440 IEKGNRI---EAIRTAIEMLNKQDVLVV 464
           +    R    E     +  +   DVL+V
Sbjct: 421 VHVEYRENTSELTDYVLNSVAPGDVLMV 448


>gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 472

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 126/381 (33%), Gaps = 29/381 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK          +++  +        +    +  V  DSR ++ G +FV + G   DGH 
Sbjct: 1   MK-----AIKLMDVVKAVHAIDYTALDRFISVTGVEFDSRKVKPGDLFVPLSGGATDGHD 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I QAI  GA A + S         A       I++VD+T   +   A+         ++
Sbjct: 56  YIQQAIKNGAVATLWSKEA-----QAAPADQIAIVLVDDTLVAMQALANYYRNSLNPKVI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK++       + +         G                  P  L +  +   
Sbjct: 111 GITGSNGKTTTKDMTANVLKAKYKVHKTEGN----------YNNEIGLPYTLLQMPAD-- 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  S  G  +      +      T +G  H+++  ++     AK+ + + L 
Sbjct: 159 -TQVVVCEMGMSDFGEIEVLSKIAQPDIAVITLIGESHLEFLGSRANIAKAKLEILKGLK 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                     +      + +     G R  S G                 +    +    
Sbjct: 218 EDGLFIYPANE----PLLQEAGQALGDRARSFGLDNTADFYAYDLKEDKNKTYFHTNIDD 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+ G + V NA++A  +   + +     +  L +  +   R E++  ++    +
Sbjct: 274 QVLCSIPVMGAYNVGNAMIALTVAQELKVPIEQAIFQLSQFKLTKNRLEWLTASNGASIL 333

Query: 359 YVDYAHTSNSLEMILKNIRTI 379
              Y  +  S++ +LK+   +
Sbjct: 334 NDAYNASPTSIKAVLKSFSQV 354


>gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
          Length = 453

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 157/462 (33%), Gaps = 45/462 (9%)

Query: 12  PELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            +L   L++ P    +R I   +++D+R+++ G +FVA+ G   DGH F+ +A+  GA A
Sbjct: 8   AQLAEILAVAPPVQSDRAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGAIA 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VV  ++  +        + P+L V++T K     A     +    ++AVTG+ GK++  
Sbjct: 68  AVVDRSWESEGL------DLPLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTK 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +          +  +     +     +       P  L +      S     + +   
Sbjct: 122 ELI----------AAVLTTKGNVLKTQLNYNNEIGVPKTLLE---LSESHHYAVIEMGMR 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           + G         +      TN+G  HI    +++A   A        +P +S AI+ +D+
Sbjct: 169 ASGEIAFLTQIARPTIAVITNVGTAHIGRLGSREAIAQA-KCELLAEMPNDSIAILNSDN 227

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A       +          +        L            TIS++  +     P     
Sbjct: 228 ALLMATAAKVWQGETLAYGLEKGNLCPELID--------DRTISIDSINLPLPLPGRHNA 279

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
             Y A +A    + +  +       ++       R+E              Y     S+ 
Sbjct: 280 VNYLAALAVAKVLGVSWEPLKGGLSVDLPSGRAKRYELANDIVILDET---YNAGLESMI 336

Query: 371 MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPE 426
             LK +      R I V G     G+R       +G+ A +L  D   +  D    E+  
Sbjct: 337 AALKLLADTPGKRHIAVLGTMKELGERSLEFHRQVGEKARELNLDALFILAD---FEEAS 393

Query: 427 KIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I      G+P        +   R    +   E +   D ++
Sbjct: 394 AIATG-AAGLPFVELGDITQVDAREMMAKRLQEFVKAGDRIL 434


>gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 454

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 81/468 (17%), Positives = 164/468 (35%), Gaps = 34/468 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  K   E I+       Q+ + +I  V+ DSRHIQ G +F+   G   DGH +  QA+
Sbjct: 3   NITLKQLAEWID--CDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A      +  +D + T  +N P++ V+NT   L   A          ++AVTG++
Sbjct: 61  NDGAGA-----TFFQRDSTLTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT        +           H
Sbjct: 116 GKTTTKDMLENVLSGKFRVQKTQGN----YNNEIGMPLTILELNEDTEVSILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S+           +      TN+G  H+    +++    AK  +   L  +    
Sbjct: 172 EIELLSNIA---------QPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    + ++K           V       +  +   + + ++        D  +  
Sbjct: 223 Y-----DGDEPLLKPHVETLTSAHQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYTI 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  + NA +A  +   +G+    + + L  L +   R +     +    I   Y  
Sbjct: 278 PILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPNGAMVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  + +   G  I+V G     G++ +     +G    +     + T     
Sbjct: 338 SPTSMKAAIDTL-SHMKGETILVLGDVLELGEQSRQLHESVGAYLENKGIHQLYT----F 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            E    I  +    +   I    + + +R    ++ +  V++V A +G
Sbjct: 393 GEGAMAIHEKGKAYVNEAIHFDQKDKLMRYLTSIVEQHSVVLVKASRG 440


>gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
 gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
          Length = 470

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 145/376 (38%), Gaps = 26/376 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                  + P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTIT 380
           +  +L+ +LK    + 
Sbjct: 350 SPTALKTVLKTFMHMN 365


>gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
 gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
          Length = 467

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 85/464 (18%), Positives = 153/464 (32%), Gaps = 38/464 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L      ++   +        +  +N V  D+R +  G +FVAI G + DGH FIP A 
Sbjct: 18  NLEALTLIQVAQAVRGELRNPADLTVNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAF 77

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A V               ++ P ++V +TR+ L   A          ++ VTG+ 
Sbjct: 78  ESGAAAAVSDREIE---------TDRPYILVKDTREALLDLARCYRRAFDGLVVGVTGSV 128

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +      +    G  +     A     T              S+     
Sbjct: 129 GKTTTKEMIAAVLSAGYKTLKTQGNLN----NAIGLPRTIFE---------LDSTYEAAV 175

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S+ G             G  TN+G  H++   T++    AK+ + E + P     
Sbjct: 176 IEMGMSALGEISLLTRTALPDIGVITNIGVSHLETLGTRENILKAKLEILEGMAPGAPLV 235

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I   +D      + R          +           +       +  I         L 
Sbjct: 236 INGDNDLLQTVQLDR----PVLTCGIDNPDADYRAVNIQPRGFDTEFDIVYGENAVHVLL 291

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  GE  V NAL    +    G++ A +   L        R +   T +    I   Y  
Sbjct: 292 PAIGEHNVLNALFGFAVGRFAGMEDAAIATALGTYTPSGMR-QNTRTVNGVMLIEDCYNA 350

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +S+   L  ++ ++  GR I V G     G   Q      G++A      A+      
Sbjct: 351 SPDSMRAALTTLQQLSCAGRKIAVLGDMLELGPVSQQAHAEAGELAQKCGVDALFCFGAL 410

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLV 463
             E  +        GIP      +  +++  ++   +   D ++
Sbjct: 411 SRETAKH-----GEGIPHVEWFDD-KQSLAQSLSGFVQPGDAVI 448


>gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
 gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
          Length = 453

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 154/412 (37%), Gaps = 28/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +   +  +++V++D+R + AG +F+A+ G + D H F+ +A+A
Sbjct: 1   MITLTLQKLAD-LTGGKLFGGDLSVDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEAMA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS   ++      +          +TR  L   A  +  +    ++A+TG+SG
Sbjct: 60  AGASALLVSKHVTVAVPQVVVA---------DTRIALGQLAGWVRQQSTARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I +  G + +  G  +               P+ L       +S     V
Sbjct: 111 KTSVKEMTAAILRECGETLYTAGNLN----------NDIGVPLTLL---RLNASHQYAVV 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  +  +       NL   H++   +      AK  +F+ L    +  +
Sbjct: 158 ELGANHQGEIAYTTEITRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPINGTAIL 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + +             R  S            V    +     +           P
Sbjct: 218 NADSNDWPHWQHSLHSKTVWRFSSAPQADSDFSATDVKVTSSGTHFVMITPAGSIAIQLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++    + + + L  L  VPGR   V        +   Y   
Sbjct: 278 LPGRHNIANALAAAALALSVDAPLSAIQKGLSHLQAVPGRLYPVALAENKLLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIA 413
             S+    + +  +   R++VV   G  GD  +     +G+ A  LA  D  
Sbjct: 338 VGSMTAAAQVLSEMPGYRVMVVGDMGELGDEAEECHREVGE-AARLAGIDKV 388


>gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 449

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 150/382 (39%), Gaps = 9/382 (2%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +     VS+DSR +  G +FVA+VG   DGH FI QA  +GA   +V       D     
Sbjct: 5   KIDFTGVSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEY-- 62

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++ V NTR  L   A+    +    ++AVTG++GK++V   +  I +R+   + +
Sbjct: 63  --GIPLIRVQNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPE 120

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
              T    +                  L          + +  +  G   +     K   
Sbjct: 121 EMRTDAPDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSV 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN G  HI    + +A   AK  +FE  L ++  A+I ADD +++   +       +
Sbjct: 181 ALITNAGDAHIQGLGSVEAVARAKGEIFEG-LDQQGIAVINADDPHNRLWREL--AGNRQ 237

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++  G + K           +  Q+T+ +     +    +PGE  V NAL AA + +A+G
Sbjct: 238 IIDFGLKSKAKVSADYKLTFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVG 297

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    +   L     V GR +          I   Y    +S+   L  +      +++V
Sbjct: 298 VSLKTIASGLSTFGGVKGRMQRKCGVRGATLIDDCYNANPDSVRAALAVLARAEGKKVLV 357

Query: 387 V--FGCGGDRDQGKRPIMGKIA 406
           +   G  GD+ +     +G  A
Sbjct: 358 LGDMGELGDKGREFHEQIGDEA 379


>gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
 gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
          Length = 448

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 141/386 (36%), Gaps = 26/386 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  +     VS+D+R +  G +FVA+ G   DGH F+ QA  +GA A ++         
Sbjct: 14  LQGEDVVAQGVSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGASAALLEQ------- 66

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
             TI  + P + V + R  L   A+    +    ++AVTG++GK++V   +  +   +G 
Sbjct: 67  --TIEDSLPQVEVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMIASVLGGAGS 124

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +               P+ L           +   + + S  G     +   
Sbjct: 125 VLATQGNLN----------NDIGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLV--- 171

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN G  H+D     +    A      + +     A++ ADD +       A  
Sbjct: 172 RPQVALITNAGPAHLDGFGDLKGVARA-KGEIFQGVNPGGVAVLNADDPHFSYWRDLAGE 230

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +  Q   +    + A     + T+            LPG   V NAL A+ + 
Sbjct: 231 LPVIGFGL-TQSAEVTAHHLAAHSEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAVA 289

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           IA+G+D   +   L  L  +PGR +          +   Y     SL+  L+ +      
Sbjct: 290 IALGLDRDQISAALAALPSIPGRLQIRRGAGGMRLLDDTYNANPASLKAALELLAEFPGE 349

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA 406
           R +V+  F   G+       +MGK A
Sbjct: 350 RFLVLGDFAELGEEAAPLHRMMGKQA 375


>gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 455

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 146/475 (30%), Gaps = 41/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKALNTTCEGDDQTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +        N  ++ VD+    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPMTILEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H L  +     +   +  +        +           + L +
Sbjct: 155 EILVLEMGMDRPG-QLHHLSELTHPDVAVITMIGEAHIEFFGTRDKIADAKMEITDFLRE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+   +E  K+                   +            T ++   + 
Sbjct: 214 DGEFIFNGDEPLLQERAKKLDQVKATFGFRDEDT----VHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   ++    +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDAGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++  ++ +   +     G  I V G   +  +    +   ++  L D  I+ +
Sbjct: 330 VYNSNPTAVRAVVTSFGQVEVKDDGCRIAVLGDMLELGKNSPALHAGLSDTL-DPQIINE 388

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   +          +  +      I      +   D++V+  KG
Sbjct: 389 VYLYGPEMKNLYDALKDKYKPEHLHYYTQDQMDRMIDDLKNDIKPDDIVVL--KG 441


>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 467

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 90/471 (19%), Positives = 172/471 (36%), Gaps = 26/471 (5%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           K+++++     +         +   E  ++ +  DSR      +F+AI+G   DGH +I 
Sbjct: 5   KIKEVLEATRGQ--KSNGRLVIGDLEASLSSIVIDSRQAGPDTMFIAIIGENTDGHKYIK 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            A   G    +VS    + D        + I+ VDNT   +   A     K    ++ +T
Sbjct: 63  SAYDLGCRTFMVSQELDILDQL----DGSSIVCVDNTELAMGQLAKYYKNKFDIPVVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    V  +      +       +               P+ +    S      
Sbjct: 119 GSVGKTTTRDMVYAVVSNKFRTLKNEKNLNNQFGV----------PLTIFNLDSS---YE 165

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  S  G   +  D ++      +N+G  HI++  +Q+  F AKM + +      
Sbjct: 166 CAVIEMGMSGFGEIDYLADIVRPDIAVISNIGTSHIEHLGSQEGIFKAKMEISDYFSEDS 225

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   D+  SK   ++   +             I LK +  + NK    + +E K+ +
Sbjct: 226 CLIVNGDDEYLSKLRAEKDAISYSLCSFGKDWKNTIVLKSIENLDNKTNFVVKLEDKEEE 285

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P  GE  VYNA+ A  + + +G++   + + L        R   + T        V 
Sbjct: 286 FSIPTVGEHNVYNAMSAILVGLRLGMNIDEIRQGLMNFVATGDRQNIINTGKYLVINDV- 344

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S+   LK +      R + + G     GD ++     +G  ++  +D+ I    
Sbjct: 345 YNASPDSMIASLKVLALNKDRRKVAILGDCLEMGDYEEEGHRRVGLQSVRRSDVIITQGK 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
             R    E    E    +        + E I     +L  QD ++V A +G
Sbjct: 405 AARFIGIE--AQEHGFDLSNIYHFDTKKELIEDLKNILEDQDAILVKASRG 453


>gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
 gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
          Length = 445

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 163/467 (34%), Gaps = 52/467 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  ++ ++      Q+S  P          VS+D+R +Q G +FVA+VG K DGH ++ 
Sbjct: 4   QLTAILGENLRRSPQQISPEPA-------TGVSTDTRDLQPGNVFVALVGEKFDGHDYVD 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA   GA A++ S           + ++ P  +V++T +      +    +    ++ +T
Sbjct: 57  QAHQAGAIALITSRP---------LETDLPQWIVNDTLRAYQDLGAWWRQQVNIPVIGIT 107

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK+S    +  I    G         +      +     TP                
Sbjct: 108 GSVGKTSTKELIAGILGTQGKVLKTEANFNNEIGVPKTLLNLTPD-------------HD 154

Query: 182 VTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              + +     G +  RL  I +   G  TN+G  HI    +++A   A      E +PK
Sbjct: 155 FAVIEMAMRGPG-EIARLAEIAQPTIGIITNVGTAHIGRLGSREAIAKA-KCELLEFMPK 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +S A++ AD+           +                                V+  D 
Sbjct: 213 DSVAMLNADNELLMATAATVWSGETLSYGFSQGDLTGEYIAPD----------QVKVADQ 262

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PL G+    N L A G+   +G      L     L +  GR + +   +    +  
Sbjct: 263 VFPVPLAGQHNALNYLAALGVMQVLGFGW-QGLTTEISLAMPKGRSQRIVLPNDIVLLDE 321

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVT 416
            Y     S+   L  ++     R I V G     G+  +     +G+ A  L  D   V 
Sbjct: 322 TYNAGLESMLAALDLLKQTPGDRHIAVLGTMKELGEFSEALHTQVGEKAQTLGLDQLYVL 381

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D+P   + + I    + G+P  +   +    I      +   D L+
Sbjct: 382 VDDP---EAQAIADGAL-GVPS-LCFPDHRSLIEHLRANMQPGDRLL 423


>gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
 gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
          Length = 476

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 160/480 (33%), Gaps = 50/480 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F+AI G++ DGH ++  A+  GA   +V      +D    +  +
Sbjct: 27  ITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAAALEAGASLALV-----AEDSLGDLPDD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VVD+  + +         +    I+AVTG+ GK+     ++     SG     +  
Sbjct: 82  GRYVVVDDPLEAMRALGVAARARTNARIVAVTGSVGKTGTKEALRLALAPSGKVHASVAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  +  G     +  ++      
Sbjct: 142 FNNHWGV----------PLTLARMPAD---TDFGVFEIGMNHAGEITPLVQMVRPHVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--EVMKRAHNAGCRV 267
           T +   HI++ ++ +    AK       L  +  AI+  D+        +          
Sbjct: 189 TTVEAVHIEFFESVEKIAQAKA-EIFNGLEPDGVAILNRDNKQYDLLRFLAATAAVRNVQ 247

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                  +  HLK   A  +   V  S+ G+D  +    PG   V N+L        +G 
Sbjct: 248 TFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSLAVLTAVADLGA 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTIT---S 381
           D       L  +    GR E    +  G     I   Y     S+      +   T   S
Sbjct: 308 DLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAFSVLAQATLGGS 367

Query: 382 GRIIVVFGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           GR I V G       D DQ    + G I     D       +          A +   +P
Sbjct: 368 GRRIAVIGDMRELGTDADQLHAELEGPIREAAIDRVFCAGPH---------MAALWDKLP 418

Query: 438 GFIEKGNRIEA---IRTAIEMLNKQDVLVVAGKGHETVH-----IVTNGEKKMSVDCDII 489
             ++  +R EA   I   ++ +   DV+++  KG               E   + D +  
Sbjct: 419 DDVKAHHREEAKDLIELLLKDVQPGDVVMI--KGSLGTRMGPLVEALKKEYPPADDIEAA 476


>gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 458

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 138/392 (35%), Gaps = 30/392 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  +   +I+              +  +S+D+R I+ G +F+A+ G K DGH F+ +A 
Sbjct: 1   MLKWNANNIIDATGGRGEGVCNSVYSSNISTDTRSIKKGDLFIALKGKKFDGHDFLHEAF 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTG 122
            +GA A VVS              N P+++V +T K L   AS           ++ +TG
Sbjct: 61  LKGAVAAVVSEDKYR---------NFPLIIVQDTLKALHNMASYYIRNILVNAKVITITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    +  +    G+S    G          +N +  P  I     L        
Sbjct: 112 SVGKTTTKDMLNTVLLHYGVSHVNEGNL--------NNNIGLPFTI-----LKAPEDCQY 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  +             TN+   H++   +      AK+ +   +    +
Sbjct: 159 LILEIGMSRAGEIKELSKISNPDIAVITNIEPAHVENFSSLLDIAQAKLEILHGMKNNGT 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D    + +    N                L+ +   +          G+  + 
Sbjct: 219 LVL--NKDNEHYDYLLSNANRNVVSFGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNC 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIY 359
             P+ GE   Y+ALV   +  ++ +D + +   LE   V  GR         G     I 
Sbjct: 277 NLPVKGEHFAYSALVVTAVLQSLELDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLIN 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
             Y     S++  ++ + T ++ R + + G  
Sbjct: 337 DSYNANPTSMKAAIRTLGTYSNLRKVALLGDM 368


>gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
 gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
          Length = 497

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 101/493 (20%), Positives = 164/493 (33%), Gaps = 49/493 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +L+Y   P +I Q    P  W   +I  V +DSR +  G +FVA+ G + DGH F+ 
Sbjct: 3   RLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLA 62

Query: 62  QAIAQGAEAIVVSSA---------------------YSLQDFSATIRSNTPILVVDNTRK 100
             + +GA A +VS                          Q  +        ++ VD+   
Sbjct: 63  DVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLF 122

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            L   A          ++ +TG+ GK+S    V  +C R   +          S  + ++
Sbjct: 123 ALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRT--------LKSQRSFNS 174

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHID 218
            +T P+ +          +       +E       + R      +   G  TN+G  H++
Sbjct: 175 EVTLPATL-------LGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLE 227

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              + +A  NAK  L E L       +    D +    M     A               
Sbjct: 228 RLGSIEAIANAKAELPESLPADGWCIL--NADDHRVAAMASRTAARVLTYGYAPNADVRL 285

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L  V       ++T+  EG+      PL G    Y AL A    + +G+D   + E L +
Sbjct: 286 LDVVSHGLYGIELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE 345

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRD 395
                 R   V        I   Y     S    L+ +   T GR I V G     G   
Sbjct: 346 -PGEQLRLRIVPGQHGTTIIDDTYNAAPLSTIAALQVLAE-TKGRRIAVLGEMLELGAAS 403

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                 +G  A  +AD+ +       +       A +       +   N   AI      
Sbjct: 404 VEGHQQVGAAAATMADVLVAVGRQAHTMAEAARSAGMPA--EQILVCDNNEAAINLLNRY 461

Query: 456 LNKQDVLVVAGKG 468
           +   D L++  KG
Sbjct: 462 IQPGDHLLI--KG 472


>gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 459

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 156/411 (37%), Gaps = 41/411 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L  +   +LI           +  I+ VSSDSR + +  +FVA+ G   DGH F   
Sbjct: 6   LSELATRLKGQLIGD---------DLFIDSVSSDSRAVNSQTLFVALKGENFDGHAFAQA 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++V            +  N   L+V+N++K +    + +  +     +A+TG
Sbjct: 57  AVDAGANALLVERE---------LPINATQLIVNNSQKAMGEIGAYVREQVAPTCVALTG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           ++GK+SV   +  I  +     +  G   + I       RL       + +  +  + + 
Sbjct: 108 SNGKTSVKEMIATILSQKHQVLYTAGNFNNEIGVPLTLLRLQQGDEFGVFELGANHAGEI 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               S+   S  +                N+   H++   + +    A        +   
Sbjct: 168 DYTSSLVKPSVAM--------------VNNVASAHLEGFGSLEGVAKA-KSEIFNHISTG 212

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEG 297
             A+I ADDA++  +++ + +       V  +            +   + +   ++  + 
Sbjct: 213 GTAVINADDAFADVMLQASSHVKQLCFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDA 272

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +      PL G  QV NAL A  +CIA+G+   L+ + L  L  V GR            
Sbjct: 273 EVHRVELPLAGRHQVSNALAATSICIALGLSLPLICQGLSLLQPVKGRMLPSQLGRV-TV 331

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
           I   Y     S+   +  ++ I   R +V+   G  GD        +G++A
Sbjct: 332 IDDSYNANPASVGAAIDWLQEIKGNRCLVLGDLGELGDNAALLHRELGELA 382


>gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes str. Scott A]
          Length = 470

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 145/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                  + P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 350 SPTALKTVLKTFMHM 364


>gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 459

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 186/474 (39%), Gaps = 38/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL DL  +D  E  N + +     RE K++ +S+D+R+I    +F+A+ G K DGH F+
Sbjct: 1   MKL-DLTVEDILEATNGV-LIKGDIRE-KVDSISTDTRNINEDEVFIALKGEKFDGHDFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI +G + I++S   +++        N  ++ V +T K L   A+    K    ++ V
Sbjct: 58  KDAILKGVKGIIISREIAVEG-------NIFVIRVQDTLKALQDIANYYRRKLKTKVIGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + + ++    G +         +S    +N +  P  I     L      
Sbjct: 111 TGSSGKTTTKNLIGKLLSIVGKT--------YVSRENFNNEIGVPLSI-----LDAEEDV 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +   + G         +   G  TN+G  HI    +++A   AK  +FE  + +
Sbjct: 158 DFLVLEMAMRNKGEISLLSKIAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEH-IKQ 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+  DD +S  + ++                   + +    +   ++    +GKD 
Sbjct: 217 DGVAILNNDDPFSMRIYEKLKIKKYTFGFDERSDLRGEIVEKNEENYLLKINF-PDGKDI 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+       N L++  +   I  +S   LE      +   R       +    I  
Sbjct: 276 KLSLPIYPLNIYRNLLLSLLVLWVISPESVYSLEKDFYFDLPKQRLNLKRKENGLVIIDD 335

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQ-GKRPIMGKIALDLADIAIV 415
            Y    +S+   ++ +  +  SGR IV+ G     GD    G R ++ ++     D+AI 
Sbjct: 336 TYNANPDSMRTAIEYLDLLKSSGRKIVLLGDMLELGDHSIDGHREVIEEVFKRNIDMAIF 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
               P           +           +  E I++ ++  L   D ++V  KG
Sbjct: 396 --YGPEMRKALDTYQNLDK--KRIYWSKDPEE-IKSILKNSLCAGDTILV--KG 442


>gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 460

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 145/415 (34%), Gaps = 33/415 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L         E+ N          +   +  + +DSR +Q G +FV + G + DGH F
Sbjct: 1   MQL------TLHEIANATGAVGDFDPQTPPVCRIQTDSRAVQPGDLFVCLSGERFDGHNF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A ++GA AI+             + +  P+L+V +T   L   A          ++A
Sbjct: 55  VDEAASKGASAIIAQQPLF------DLSAGIPVLLVQDTLHALGQLAGYWRRTFGGTVVA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG++GK+S    +  +  R G ++              +NRL  P  I     LS+   
Sbjct: 109 VTGSAGKTSTKECIAGVLGRRGQAAKSYKN--------WNNRLGVPLNI-----LSFSGE 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +    +    S  G        I       TN+   H++           K+ L + L  
Sbjct: 156 EEFWVLEAGISEPGEMAALASIIAPDVAVVTNVAPVHLEGLVDVPTVVEEKLHLCDHLTH 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +  +       S+             +       +     +       +  +S +G  
Sbjct: 216 NGTLVLSVDYPELSQRAASAVCPKTYFSVQAEKAPYWCEP--IQDPEVYGRFQLSCDGVR 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +F  P   ++   N   AA +   +G++   ++  L+   +   R + + T   G  I 
Sbjct: 274 TEFDLPWAADYMAENLAAAACVGHRLGLEVEEIVAGLQTAELPEHRGQLL-TLPGGIVID 332

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLA 410
             Y    +S++  ++        R +V+        G   +     +G++   +A
Sbjct: 333 DAYNANPHSMQRAIRAAARRAGERPLVLVLGEMAELGPDAEAAHTQLGRVVGAVA 387


>gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 451

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 153/451 (33%), Gaps = 33/451 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              Q+  + I  V+ DSR I+   +F+   G   DGH F+ QA+  GA A      + + 
Sbjct: 17  IDSQYLRQTIKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQALKDGAGASFYEKGHDID 76

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           D         PI+ VD+T   L   A          ++ VTG++GK++    ++ +    
Sbjct: 77  DNVKG-----PIIWVDDTLIALQQLAKAYLKHVNPKVIGVTGSNGKTTTKDMIESVLHTE 131

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  G      +      LT    + L   +S L         +E  S+  +     
Sbjct: 132 FKVKKTQGN----YNNEIGLPLTILE-LDLDTEISILEMGMSGFHEIELLSNIAE----- 181

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+G  H+    +++    AK  +   L  + +           + +++  
Sbjct: 182 ---PDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKKEGTFIY-----DGDEPLLEPH 233

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                    +    K  +       H++          +  +  P+ G   + NA +A  
Sbjct: 234 VKKIKHAKCLSVGLKQDNALVCEVEHSENDGIAFSINGNEHYKLPILGIHNMKNAAIAIA 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G+    +  ++  + +   R E   T+     I   Y  +  S++  +  +  + 
Sbjct: 294 IGHELGLKYETIQHNINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDTLSQM- 352

Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            GR I+V       G+  +     +G          ++T      +D + I       + 
Sbjct: 353 EGRKIIVLADSLELGENSRSMHEEVGAYLEGKNIHTLLT----YGKDAKYISDIGGQFVD 408

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 ++ +  +  I  L   D ++V  KG
Sbjct: 409 HVEYFIDKQQLTQYLINNLVANDKVLV--KG 437


>gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 460

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 146/378 (38%), Gaps = 24/378 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I+ +++D+R I    +F+A++G   D H+F+ +AI++GA A+++      ++      
Sbjct: 28  ISIHSITTDTRKITPKCLFIALIGKNFDAHMFVNEAISKGAAALLLEKQCYPKNV----- 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P ++V NT   L   AS +  +    ++A+TG+SGK+SV      I +  G +    
Sbjct: 83  --IPQIIVQNTTIALGKIASWIRDQTNATVIAITGSSGKTSVKEMTSSILKNCGNTISTF 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ L    +   S     + + A+     ++     K    
Sbjct: 141 QNLN----------NNIGVPLTLL---NLNKSHKYAILELGANYPKDIEYTTKITKPNIA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H+   ++   +  A+ +    L  +++   IY  D+      K+       +
Sbjct: 188 LINNIYHSHLAGFKS--LFGVAQAKQEIFLGLRKNGIAIYNKDSNYWSKWKKNLLTQKII 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +   I    +   +   +  I     +     PL G   + NAL AA + I+I I
Sbjct: 246 NFSIKKNSTIFASNITTSNQGSKFKIHSPNGEIYVTLPLLGYHNISNALAAATIAISINI 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              ++   L  L ++  R + +  N     I   Y   + S+ + +K +  I+  ++ V 
Sbjct: 306 PLEIIKIGLSSLPILKNRLQIIRLNKYKTIINDTYNANTASMIVAIKILENISGYKLFVA 365

Query: 388 --FGCGGDRDQGKRPIMG 403
                 G  D     I+G
Sbjct: 366 GDMLELGKNDVLYHKIIG 383


>gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
 gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
          Length = 472

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 174/473 (36%), Gaps = 33/473 (6%)

Query: 6   LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I+K    + +    ++   Q     I  V +DSR IQ G +FV IVG K DGH F    
Sbjct: 1   MIHKSLKSIADLCGGTLSRNQDANIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A GA A      +           + P+++V++T   L   A+    +    ++ +TG+
Sbjct: 61  LASGAGAAFWQRDH-------QPVPDLPLILVEDTLTALQSLAAAYLSETSAKVVGITGS 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V   V  + + +       G          +N +  P  +     L+      + 
Sbjct: 114 NGKTTVKDMVSALLETTYKVHKTQGN--------YNNHIGLPLTV-----LAMKEDTDII 160

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S     +      +      TN+G  H+    +++    AK+ +   + P    
Sbjct: 161 VLEMGMSGRHEIELLSTIARPDMTVITNIGEAHMLQLGSREEIARAKLEIISGMKPGGLL 220

Query: 244 AIIYADDAYSKEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                +    + + +       G    + G Q            H +  +  S       
Sbjct: 221 IYHGDEPLIDQVLAEESTVKPEGLNTFTFGNQETNDDYPTGLMFHARGIIFTSNRHAGEG 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  PL G   V NAL A  +   +GI    +      L +   R E V T      +   
Sbjct: 281 FSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFANLKLSSMRIEAVETPFGVTVLNDA 340

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVT 416
           Y  +  +++  +  +  +    + I V G     G R+      +G     D AD+    
Sbjct: 341 YNSSPTAVKAAVDVLGDMKGYRKRIAVLGDMLELGQREGEFHAEIGDYLSPDNADLVF-- 398

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              P S    + RA++       +   ++ + I + +E ++++D+++V A +G
Sbjct: 399 TYGPLSVHTAE-RAKLRFPDGAVLSFTDKEKLIASVLEHVSEKDIVLVKASRG 450


>gi|240147080|ref|ZP_04745681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257200757|gb|EEU99041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 100

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           MG+ A  LAD  I+T DNPR EDPE I  +I  GI G    +I   +R  A+  A +   
Sbjct: 1   MGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAVAYAFDHAR 60

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           + D++V+AGKGHE    +  G +    D +++++ 
Sbjct: 61  EGDIIVLAGKGHEDYQEIG-GVRYPMEDKELVKKA 94


>gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri DSM 4166]
          Length = 458

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 162/473 (34%), Gaps = 45/473 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       L+           +   + VS+DSR IQ G +F+A+ G + DGH ++
Sbjct: 5   MRLSELQLPLSGRLVG---------ADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V+                P LVV +TR  L    +         + A+
Sbjct: 56  AEVAAKGAVAALVAREVEGAP--------LPQLVVADTRLALGRLGALNREAFKGPVAAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+SV   +  I + +      +     +++          +P+ L +  +     
Sbjct: 108 TGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNNDL-------GAPLTLLELSAEHR-- 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G   + +  ++      TN G  H+      +    A      + L  
Sbjct: 159 -SAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKIVQA-KGEILDGLSA 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKD 299
              A++  DD       +R          +           +           ++    +
Sbjct: 217 TGTAVLNRDDKAYPIWAERVAGKRIVSFGLDNPPADFSAGSIAYDQRGCPNFVLTGPLGN 276

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G   V NAL AA    A+GI +  V+  L+ L  V GR       +    I 
Sbjct: 277 LRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPVKGRAVAQMLANGVRLID 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIV 415
             Y     S+   +  + +  +GR I+V G  G+     +QG R  +G  A    D    
Sbjct: 337 DSYNANPASICAAIDVLASF-AGRTILVLGDMGELGEWAEQGHR-DVGAYAAGKVDTLYA 394

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       +   +     G     ++   I +          +++  KG
Sbjct: 395 VGP--------LMAHAVAAFGQGARHFPDQASLIESLRAEQGSGTTILI--KG 437


>gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
 gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
          Length = 457

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  + NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNIKNALAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
          Length = 483

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 148/384 (38%), Gaps = 16/384 (4%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +    L        + +   VS+D+R I+AG +++A+ G K DG  F  QAI  GA A
Sbjct: 4   LAQAAKVLHGHIKGPTDARFMAVSTDTRKIKAGDLYIALRGEKFDGADFAAQAIESGATA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +++++  S +  S  +   + IL+V +TR  L   A+    K    ++A+TG++GK++V 
Sbjct: 64  VLMNAD-SFEARSLILNPQSSILLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKTTVK 122

Query: 131 SFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             +  +    +G     +      ++           P+ L +  +         + +  
Sbjct: 123 EMLASVLRSAAGSDDAVLATKGNFNNDIGM-------PLTLLQLNAQHR---YAVIEMGM 172

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G   +             N    H++   + +A  +AK  +F   L     AII AD
Sbjct: 173 NHPGEIDYLTRIACPNVALINNASGAHLEGMGSVEAVAHAKGEIFSG-LQPGGSAIINAD 231

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D ++     R       +L  G  G    +          ++ +     DF     +PGE
Sbjct: 232 DEFAPLW--RCLAGANSLLEFGLSGHSDVVGAWQPNGAGLRLDVKTPVGDFTVEMQVPGE 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL      IA+ +    ++  L K   V GR +          I   Y     SL
Sbjct: 290 HNARNALAVTAAAIALNLSLESIVAGLSKFSGVAGRLQRKPAREGAVLIDDTYNANPASL 349

Query: 370 EMILKNIRTITSGRIIVVFGCGGD 393
           +  +  +    SG+ ++V G  G+
Sbjct: 350 KAAI-AVLAAMSGQRVLVLGDMGE 372


>gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 452

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/467 (16%), Positives = 163/467 (34%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLTQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+K+ +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKKVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S+   +  + T+ +GR I++ G     G+  +     +G    +     + T  N  
Sbjct: 338 SPTSMRAAIDTLGTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + + I       +       ++ + I   I  L   D ++V  KG
Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLV--KG 437


>gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           denitrificans OS217]
 gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella denitrificans OS217]
          Length = 457

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/408 (21%), Positives = 151/408 (37%), Gaps = 31/408 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L  +L+   +      I  VS+DSR I A  +FVA+ G + D H F   AI 
Sbjct: 1   MIELTLDALAQKLNAKHLG-ENLTIANVSTDSRAIPAACLFVALKGERFDAHDFAATAIE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+A++V    +L         + P L+V N++K +    + +        +A+TG++G
Sbjct: 60  NGAKALLVERELAL---------DIPQLIVANSQKAMGEIGALVRDIVSPICVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SV   +  I  +     +  G   + I       RL+      + +  +    +    
Sbjct: 111 KTSVKEMLASILSQGHQVLYTAGNFNNEIGVPLTLLRLSQADEYGVFELGANHKGEIDYT 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            S+      L                N+G  H++   + +    A        L  +  A
Sbjct: 171 SSLVRPRVAL--------------VNNIGSAHLEGFGSIEGIAEA-KSEIFNHLSADGVA 215

Query: 245 IIYADDAYSKEV--MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +I ADDA+ + +    +A                               TI  +G+    
Sbjct: 216 VINADDAFCELMKTKAKAFKQLSFSREANTNADIQATGLNMNAAGCYGFTIHYQGQQLAV 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G  QV NAL A+ +C+A+GI    ++  L +L  V GR +          I   Y
Sbjct: 276 QLPLAGIHQVSNALAASAMCLALGISLTDIVSGLARLAPVKGRMQPHTLGRL-LVIDDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
               +S+   +  ++       +V+   G  GD        +G+ A +
Sbjct: 335 NANPSSVSAAIDWLKNRDGFCCLVLGDLGELGDNAAHLHAQVGQQAKE 382


>gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 466

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 148/439 (33%), Gaps = 42/439 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +++D+R+++ G IF+A+ G   DGH +   AI +GA A++ +              +
Sbjct: 30  VYGITTDTRNLEPGQIFLALRGETFDGHDYAEVAIKKGAIAVIANRD------QGYHLQD 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L VD+T +     A     +    ++AVTG++GK++    +          +  +  
Sbjct: 84  IPQLQVDDTLQAYQQLARWWRDQFDIPVIAVTGSAGKTTTKELI----------AAVLST 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              I     +       P  L +  S      +      +    L        +   G  
Sbjct: 134 QGNILKTQANYNNEIGVPKTLLELDSNHDYAVIEMAMRGSGQIALL---TQIARPTIGVI 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI    ++ A   AK  L  ++       + + +                    
Sbjct: 191 TNVGTAHIGLLGSEDAIAKAKCELLAQMPDTSMAILNHDNQRLMDTAATVWQGETLTFGL 250

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G   +   +     + +     +           PLPGE    N L A  +   + ID 
Sbjct: 251 NGGDVQGKLIDLFRLMVDGITFPL-----------PLPGEHNALNYLAALAVAKHLQIDW 299

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + L  + +  GR +     +    +   Y     ++   L  +      R I + G
Sbjct: 300 TPLRKGL-SVQMSGGRSQRYELPNDIVILDETYNAGFEAMIAALHLLAQTPGKRHIAILG 358

Query: 390 CG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
                GD  +     +G+ A  L  D   +T  +    + E I   I   +P      + 
Sbjct: 359 SMKELGDHSEQLHQQVGQKAQQLQLDAVFITLKD---REAEAITRGISA-LPSEGFAED- 413

Query: 446 IEA-IRTAIEMLNKQDVLV 463
            +A ++   E +   D L+
Sbjct: 414 -DALVQHLTEFVQPGDRLL 431


>gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           petrophila RKU-1]
 gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga petrophila RKU-1]
          Length = 426

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/448 (17%), Positives = 150/448 (33%), Gaps = 55/448 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
              +S+ ++ G +FVA+ G + DGH FI +A+  GA A++        D          I
Sbjct: 9   FVLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSDR---------I 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +V+++   L+  A    G     ++ +TG+SGK++    +  + +         G    
Sbjct: 60  FLVESSVDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLKNKRSVFKTPGN--- 116

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +     P  I     L+    + +  + + AS  G   H             N+
Sbjct: 117 -----MNTEYGLPLSI-----LNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNV 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++  T++           +   + + A+   DD      ++R      + L  G 
Sbjct: 167 GNAHLEFFGTRERI-METKMEIIKHSKENATAVTLFDDPD----LRREVPCYRKTLFFGK 221

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +G    LK                   F                +AA LC+   +   + 
Sbjct: 222 EGGDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSG-YWNGGQLLNIAASLCVMRALGETVD 280

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
           +  L  L  VPGRF           +   Y  +  + +  ++ +      R  VV     
Sbjct: 281 IFDLASLKTVPGRFNVREKKDV-LIVDDTYNASPEAFQTSIEALLRFPGRRFAVVGAMKE 339

Query: 391 GGDRDQGKRPIMGKIALDL----------------ADIAIVTDDNPRSEDPEKIRAEIIH 434
            G+R +     +G+    L                +   I+  D     DPEKI  ++  
Sbjct: 340 LGERSKEFHEELGERLNVLDGVYIFLSEPEAEWIKSKKIILKSD-----DPEKIAKDLAS 394

Query: 435 GIPG---FIEKGNRIEAIRTAIEMLNKQ 459
            +      + K +R   I   +EM  K+
Sbjct: 395 RVTEGDVVLFKASRAVRIEKVLEMFEKE 422


>gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
 gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
          Length = 462

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/470 (17%), Positives = 158/470 (33%), Gaps = 36/470 (7%)

Query: 6   LIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+   +        W +++I  V  D+R +    +FV ++GN  DGH FI +A
Sbjct: 1   MISLTIKEIAAAVGALNDTSMWSDQEIISVDFDTRKLVKESLFVPLIGNN-DGHQFILKA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A + S   SL+D    + ++ P++ V++T K L   A     K    ++ +TG+
Sbjct: 60  IENGARASLWSK--SLKDLPFEVAADFPVIQVEDTLKALQDLAKFYLTKVNPKVVGITGS 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++       +           G  +                I L   +  +      
Sbjct: 118 NGKTTTKDMTDAVLSSQYRVHKTQGNFNNH--------------IGLPITILEMPIDTEV 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +     +H  +   L  +     +   +  +        +A            L +   
Sbjct: 164 VILEMGMNHAGEIKVLSDLAEPDVAIITMIGESHIEFFGSRAGIADAKMEISSGLKENGV 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDF 302
            I   ++     + +R      + L          L  +       Q + +     D   
Sbjct: 224 LIYPGEEP---LLQERVTFLTDKQLKTFGTAAENDLYPLNIDAQMNQTSFTTNETPDMTI 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G + V NAL A    I +G+        L K  +   R E++   +    +   Y
Sbjct: 281 SLPVLGTYNVNNALAALMAGIVLGVPIQKSAPKLAKFQLTKNRTEWLVGINGSRILNDAY 340

Query: 363 AHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTD 417
                +++ +L N  T    G+ IV+ G   +  +    +   I   L        I+  
Sbjct: 341 NANPTAMKAVLDNFSTFENEGKKIVILGDMLELGEHSSELHLSIKESLNPNQIKKVIL-- 398

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E+   +   +         F   G++   I+ A E +   D +++
Sbjct: 399 ---YGEEMSVLYESLQETFANDNLFYFTGDKEPLIQLAKEQIEPGDYVLI 445


>gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 457

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 427

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 161/434 (37%), Gaps = 41/434 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
              +S+ ++ G +FVA+ G + DGH FI +A+ +GA A++   A    D          I
Sbjct: 9   FVLNSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSDR---------I 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V NT + L+  A       P+ I+ +TG++GK++    + ++ +R        G    
Sbjct: 60  VLVKNTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGN--- 116

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +     P  I     L+    + +  + + A+  G   H             N+
Sbjct: 117 -----MNTEYGLPLSI-----LNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAVLLNV 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++++    AK+ + +      +    + D      + K+       VL  G 
Sbjct: 167 GSAHLEFFKSRENIMEAKLEIVKHSKKDSAVVTFFDDGD----LRKKVPVLRENVLFFGT 222

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +G  + L+      N       + G  F    P     +     +AA LC+   +   + 
Sbjct: 223 KGGDVVLEDWWYYENSTISEYRMFGSSFTIKLPGF-WNRGQLLNLAASLCVMKVLGEKVD 281

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389
           +  L  L  VPGRF        G RI  D Y  +  + +M ++ +      +  VV    
Sbjct: 282 VLELSNLKAVPGRFNVK--EVEGVRIIDDTYNASPEAFQMAIEALLKFPGRKFAVVGAMK 339

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
             G+  +    ++GK    L D   V    P   +   I           +E  +  E  
Sbjct: 340 ELGEESKKFHEMLGKQLDAL-DGVYVFSTEP---EAGWI-----KTRKKVLETDSAEEIA 390

Query: 450 RTAIEMLNKQDVLV 463
           R     + K D ++
Sbjct: 391 RDLYTRVRKGDTVL 404


>gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
 gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
          Length = 463

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/448 (18%), Positives = 164/448 (36%), Gaps = 43/448 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV  AY             P+
Sbjct: 26  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVDEAY------VPTADCGPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A+         ++A+TG++GK++    +     + G   +     + 
Sbjct: 80  VAVKDTLQALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +          T                    + +  +S G         +      TN+
Sbjct: 140 LIGMPLYAANLTEDA-------------EFVVLEMGMNSPGEVDALSRIARPDVAVITNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   R++S G 
Sbjct: 187 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFG- 244

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    ++          +T+   G++             Y+  + A +  A  ID    
Sbjct: 245 VGAGADVQIFRREEPSNSITLRCFGEELQCNLKSGARHLAYSVAITAAVGRAFSIDLTQA 304

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTITSG---RIIV 386
              +E+   + GR +   T  +G  I      Y     S+   ++N+  +      R + 
Sbjct: 305 RGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 364

Query: 387 VFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFI 440
           + G   +   G     R ++ +I     D+               I A  +++       
Sbjct: 365 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVG--------SHILALYDVLPQHLSGG 416

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +  EA+     ++   D ++V  KG
Sbjct: 417 HFADHGEALAHLERIIKPGDGVLV--KG 442


>gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
 gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
          Length = 473

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 176/475 (37%), Gaps = 36/475 (7%)

Query: 6   LIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I+K    + +    ++   Q     I  V +DSR IQ G +FV IVG K DGH F+   
Sbjct: 1   MIHKSLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A GA A      +        + ++ P+++V++T K L   A+    +    ++ +TG+
Sbjct: 61  LASGAGAAFWQRDH------QPVPADLPLILVEDTLKALQSLAAVYLSESRAKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V   V  + + +       G          +N +  P  +     L+      + 
Sbjct: 115 NGKTTVKDMVSALLETTYNVHKTQGN--------YNNHIGLPLTV-----LAMKEDTDII 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S     +   +  +      TN+G  H+    +++    AK+ +   + P    
Sbjct: 162 VLEMGMSGRHEIELLSNIARPDLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLL 221

Query: 244 AIIYADDAYSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                +    + + +       G R  + G Q            H +  +  S       
Sbjct: 222 IYHGDEPLIRQVLAEEETVKPEGLRTYTFGNQDTNDDYPTGLMFHARGIIFTSRLHAGEG 281

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  PL G   V NAL A  +   +GI    +      L +   R E V T      +   
Sbjct: 282 FSLPLLGRHNVVNALAAMAVAAHLGIGDEAIRSGFAHLKLSSMRIEAVETAFGVTVLNDA 341

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIVT 416
           Y  +  +++  +  +  +    R I V G     G R++     +G     D AD+    
Sbjct: 342 YNSSPTAVKAAVDVLGDMKGYRRRIAVLGDMLELGQREESFHAEIGDYLSPDNADLVF-- 399

Query: 417 DDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              P S        +     P    +   ++ + I   +E + ++D+++V A +G
Sbjct: 400 TYGPLS---LHTANKAKARFPEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRG 451


>gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 455

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 134/417 (32%), Gaps = 34/417 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L        +  I  V+ DSR I  G +FV + G + DGH F+
Sbjct: 1   MKMQ------MAEIAKALDKTCEGDDKTVITSVAFDSRKITNGGLFVPLEGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI+ GA A +    +  +           ++ VD+    +   A     K    ++ +
Sbjct: 54  AGAISNGASATLWKKGHPNK------PEGIAVIEVDDPLAAMQTLARYYLRKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +           +             P             + 
Sbjct: 108 TGSNGKTTTKDMIAAVLSKRFNVHKTQANFNNEIGVPMTVLEMKP-------------NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H  +  +      T +G  HI++  ++    +AKM + + L   
Sbjct: 155 EILVLEMGMDRPGQLHHLSELTRPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLRED 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + +++       +  +         +            T ++   + 
Sbjct: 215 GEFIYN-----GDEPLLQERAKKLDQAKATFGFEDDDTVHATGFKSYMHHATFTINDSEQ 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 KFSIPMIGKHNVSNAMAAISVGRHFGESDEEIASSLSNFKPTANRMEWEKGDVGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            Y     ++  ++ +   +     GR I V G   +  +    +  +++  L    I
Sbjct: 330 IYNSNPTAVRAVITSFGQVEVKDGGRRIAVLGDMLELGENSPKLHAELSDTLDPQII 386


>gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Haemophilus influenzae F3031]
 gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3031]
          Length = 457

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 163/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S          + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida BIRD-1]
          Length = 455

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 144/470 (30%), Gaps = 41/470 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L        +    I      +     VS DSR + AG +FVA+ G + DGH ++  
Sbjct: 2   LKPLSLSQLTTALKGQHI----GGDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLAD 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             A+GA A +V    +          + P L+V + R  L    +       + ++A+TG
Sbjct: 58  VKAKGAVAALVEREVA--------GVDLPQLLVKDCRVALGQLGALNRAAFDKPVVAITG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   +  I +  GL     G  +             P                 
Sbjct: 110 SSGKTTVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPE-------------HSA 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS  G +     G+        N                        E L +  
Sbjct: 157 AVIELGASRIG-EIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFD 301
            AI+  DD        RA        + G      H   +          T+   G+   
Sbjct: 216 IAILNLDDKAFDIWKARAGAHKVVSFARGNPKADFHASDIGRDARGCPSFTLHGAGETVA 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GE  V NAL AA    A+G+  + +   L  +  V GR       +    I   
Sbjct: 276 VQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDS 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAIVTDD 418
           Y     S+   +  +    SGR ++V G  G+  Q        +G  A    D       
Sbjct: 336 YNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALYAVGS 394

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           N        +   +            + E I            +++  KG
Sbjct: 395 N--------MAHAVKAFGANGRHFATQAELIDAVSAENASDTTILI--KG 434


>gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
 gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
          Length = 470

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 350 SPTALKTVLKTFMHM 364


>gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
 gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
          Length = 445

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/462 (15%), Positives = 137/462 (29%), Gaps = 44/462 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L  +   +L+              +  + +DSR +Q G +FVA+ G + DGH FIPQA++
Sbjct: 2   LTLQTVADLLQAPLQGDPHLLGLPVQALCTDSRRLQPGSVFVALRGERFDGHDFIPQALS 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A++                  P   V +T       A     +    ++A+TG++G
Sbjct: 62  KGAVAVISQRPVEG-----------PHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +     R G         +     AQ      P                    
Sbjct: 111 KTTTKEMLAAALSRYGSVLKSEANHNNDIGVAQTLLRLQPE---------------HQFA 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E +  G  + R                      +       A  +        +  A+
Sbjct: 156 VLEMAMRGPGEIRRLAQMARPTHALITHIGTAHIGRLGSREAIAAAKCELLQELGQGIAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D           +                L +            +V  +      P
Sbjct: 216 LNGEDPLLLATAASLWSGKT---------LTYGLAQGDLRGEWDPQAQTVTVEGLTLPVP 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N +       ++G++   + E L+    + GR   +            Y  +
Sbjct: 267 LPGRHHALNWMGVLAAVRSLGLNWERLQEPLDLPLPLEGRNRHLKLAGDVEIWDETYNAS 326

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPR 421
             ++   L  +      R   + G     G+        +G+ A  L  +   + D  P 
Sbjct: 327 PEAMIAALHLLAQTAGKRRWAILGPMRELGEHAPQLYAEVGRAAASLRLERVWLLD--PD 384

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            E    +  +    +  F E    +E ++   + +   D L+
Sbjct: 385 GEMQPLVDEKPAAEVERFEEASALVEGLQ---QQVRAGDRLL 423


>gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 466

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/478 (17%), Positives = 165/478 (34%), Gaps = 44/478 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I ++  E+         +  +    +  V +DSR I  G +FV + G + DGH F    
Sbjct: 1   MIKRNLAEIAAMCGGQIREAGDAGIVVQGVVTDSRQITKGCLFVPLAGERFDGHDFASDC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A + + +              P ++VD+T   L   A     +    ++ +TG+
Sbjct: 61  LQAGAGACLWALSKGTPPG--------PAVLVDDTLIALQALAKSYLTETGAKVVGITGS 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    V  +   +       G  +          L  P    +A            
Sbjct: 113 NGKTTTKDLVYALLSTTYKVHKTKGNFNNH-IGLPLTILAMPEDTEIA------------ 159

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +      +      TN+G  H+    +++    AK+ +   + P    
Sbjct: 160 VLEMGMSGRGEIELLSKIGEPETAVVTNIGESHLLQLGSREEIARAKLEILAGMKPGGLF 219

Query: 244 AIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                +    K + +       G +  + G + +           + Q +      +   
Sbjct: 220 IYNGDEPLIPKVLAEPSTVKPEGLQTATFGLRPENDQYPTGILFTDHQTLFTPHGSEGDP 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              PL GE  V NAL A  +    G+  A + E   K+ +   R E +   S    +   
Sbjct: 280 LELPLLGEHNVSNALAAITVARHYGVGEAAIREGFSKVELTGMRIEVITGRSGITILNDA 339

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
           Y  +  S++  L  +  +    + I V G     GD +      +G++          T 
Sbjct: 340 YNASPTSMKAALGVLEHMKGYRKKIAVLGDMLELGDSEADYHREIGEMLTPG------TV 393

Query: 418 DNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           D   +  P  +   I  G              ++ E IR  + +L+ QDV++V A +G
Sbjct: 394 DQLFTCGP--LSRHIAEGAKKQLDPNFIHAYTDKSELIRKLVSLLHPQDVVLVKASRG 449


>gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
 gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
          Length = 459

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/465 (15%), Positives = 167/465 (35%), Gaps = 32/465 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++++     E++ + +    ++       +S+D+R I+   IF+A+ G + +G+ +   
Sbjct: 6   LEEIVKAVSGEILIKGNELGWEY-------ISTDTRKIEEKAIFIALKGERFNGNEYTAS 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  +GA   +V     +      I+  T ++ V +T + L   A     K    ++A+TG
Sbjct: 59  ASQKGAFICIVD---EVHFKKEEIKDYTTVIKVKDTSEALLDLAKYYKSKLEVKVVAITG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S       +           G          +N +  P             +  +
Sbjct: 116 STGKTSTKDLTASVLGAKYKVFKTEGN--------FNNEIGLP-----LMIFKLDKTYDI 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S+ G                TN+G  HI+  +++     AK+ + +       
Sbjct: 163 AVLEMGMSNFGEIHKMAKTALPDIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNI 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD       ++       +     +   I+   +          I  +G +   
Sbjct: 223 LIVNGEDDLLGNLKEEKYKLIKTGLG----KNHNIYAYDINLNEKSVSFKIFEDGDELQI 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V N+L+A        +    +   +  L     R + V        +   Y
Sbjct: 279 DIPVPGKHNVLNSLLAIACGRIFKMSFEEIKNGILDLQTTSMRLDMVEGKKFN-IVDDSY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDD 418
             + +S++  ++ +  I S R   V G     G+        +GK A + + ++ ++   
Sbjct: 338 NASPDSMKAAIEVLCNIKSKRKFAVLGTMKELGEEAYRAHREIGKYAGEKSVNLIVLGSF 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +    +     +E  +     +E  ++ E I      LN +DV++
Sbjct: 398 SKAYIEGYLEGSENKNNRGNILEAKDKEEVINYLDINLNSEDVVL 442


>gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
 gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
          Length = 452

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 154/466 (33%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRSISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A       S+ +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQKGTSIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT        +           H
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN----YNNEIGLPLTILELDDDTEISILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S+           +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 172 EIEFLSNLA---------QPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    + ++K   N       +       +                       +  
Sbjct: 223 Y-----DGDEPLLKPHVNEVENAKCISIGVATDNALVCSVDDRDTTGISFTINNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHISVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYESGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437


>gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
 gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 150/405 (37%), Gaps = 23/405 (5%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++           +   + VS+DSR + AG +FVA+ G + D H F+PQ   +   AIV 
Sbjct: 7   ILQSALNGARMTADAAFDGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNVAAIVA 66

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +               P L+V +TR  L   A     +    ++ VTG++GK++V   +
Sbjct: 67  ET--------VPDGLTVPALIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEMI 118

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +      +      ++           P+ L   +    +     + +  +  G
Sbjct: 119 AAILEAACGVDNYLATRGNFNNDI-------GVPLTL---MRLQKTCKAAVIELGMNHPG 168

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                    +   G   N  R+H ++  + +A            LP +  A+  ADD ++
Sbjct: 169 EIAVLSAIAEPTVGLVNNAQREHQEFMASVEAVAQENG-AVLAGLPADGIAVFPADDEFT 227

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                R   A  +VL+ G+           A      + IS   + F       G   V 
Sbjct: 228 PLW--RQLAAQRKVLTFGFSDDADVRCSYSANAFGSDMEISAGRQQFTVALSAAGVHNVR 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A    +AIGI +  +   L+    V GR +     +    I   Y    +S+   +
Sbjct: 286 NALAAIACALAIGIATDAIARGLQAFAPVSGRLQRKLAANGALVIDDTYNANPDSVRAAI 345

Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             +  +++ RI+V+   G  G+  +     +G  A   +   ++T
Sbjct: 346 DVLAQMSAPRILVLGEMGEVGNDGRQYHEEIGAYARAKSIEYVLT 390


>gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
 gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
          Length = 470

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 164/448 (36%), Gaps = 38/448 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  VS+DSR +Q G +FV + G + DGH ++  A  +G + ++    +  ++    +   
Sbjct: 25  VEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDRGVQVVLAEHQWLEKN---ELPPG 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              + VD+T + L   A     +    ++AVTG++GK++    +  I  ++G      G 
Sbjct: 82  VSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTTKEMLAAILGQTGPGLKTEGN 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
                    +N +  P        L   +S     + +  S+ G +  RL  I +   G 
Sbjct: 142 L--------NNLIGLP-----QMLLRLDNSHRWAVLEMGMSAFG-EIDRLAEIARPDVGI 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN    H++   + +    AK  LF   LP E  A+  ADD     + +     G R +
Sbjct: 188 ITNAYPAHLETLGSVEGVARAKGELFLR-LPAEGCAVFNADDP---LIARCPSPDGVRRV 243

Query: 269 SVGYQGKFIHLKKVCAIHNK-QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           S G     +  + V  +    Q+  + +  +         G   + NAL AA     +G+
Sbjct: 244 SFGLHNADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAAAAHVLGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IV 386
            +  +   L +      RF           I   Y     S+   L  +R I +GR  + 
Sbjct: 304 PTETIARGLGEFSPYARRFNLEEVGDV-ILIDDSYNANPASMAAALTTLREIRAGRRAVA 362

Query: 387 VFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIE 441
           V G     G+  +     +G +A    D   V            + A  + G      + 
Sbjct: 363 VLGDMLELGEGAEEAHRQLGLLAATCVDRLYV-----MGGMAGIVAAGALEGGLADDAVT 417

Query: 442 KGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
                +AI           D ++V  KG
Sbjct: 418 VATSHDAIVADLRRTTAAGDFILV--KG 443


>gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
 gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
          Length = 464

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 141/387 (36%), Gaps = 28/387 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I +   +L   L    +   E     +S+D+R      +F A+ G K D H ++ +AI 
Sbjct: 1   MIKQTTQQLAQTLKGKLLGSGEVVAENISTDTRQAVEKGLFFALKGEKFDAHDYVEKAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV    ++         N P ++V++TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQR----SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           K++V     +I Q+         +  G  +            TP                
Sbjct: 112 KTTVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPE-------------HK 158

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLP 239
              V + A+  G   +  +  +  A    N+   H++   +      AK  ++   +   
Sbjct: 159 FAVVELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGG 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K    + +    + KE+      + C              K V    N  + T+     +
Sbjct: 219 KAIVNLAHYYPEWQKEIGDHELQSFCYTGEDKDSYVDFWAKNVELHLNGSRFTLHTPQGE 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P  GE  V NAL A  L +A+G D   V   LE+   V GR   +        I 
Sbjct: 279 IEINLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFID 338

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIV 386
             Y    +S++  +  ++   + RI V
Sbjct: 339 DSYNANVDSMKSAVSVLKQYPAFRIFV 365


>gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
 gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
          Length = 458

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 161/473 (34%), Gaps = 45/473 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       L+           +   + VS+DSR IQ G +F+A+ G + DGH ++
Sbjct: 5   MRLSELQLPLSGRLVG---------ADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A+GA A +V+                P LVV +TR  L    +         + A+
Sbjct: 56  AEVAAKGAVAALVAREVEGAP--------LPQLVVADTRLALGRLGALNREAFKGPVAAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+SV   +  I + +      +     +++          +P+ L +  +     
Sbjct: 108 TGSSGKTSVKEMLASILRSAHGHDAVLATRGNLNNDL-------GAPLTLLELSAEHR-- 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + AS  G   + +  ++      TN G  H+      +    A      + L  
Sbjct: 159 -SAVIELGASRVGDIAYTVSLVRPDVSLITNAGTAHVGEFGGPEKIVQA-KGEILDGLSA 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKD 299
              A++  DD       +R          +           +           ++     
Sbjct: 217 TGTAVLNRDDKACPIWAERVAGKRIVSFGLDNPLADFSAGSIAYDQRGCPNFVLTGPLGS 276

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G   V NAL AA    A+GI +  V+  L+ L  V GR       +    I 
Sbjct: 277 LRVQLNLLGRHNVANALAAAAAAHALGITAEAVVAGLQGLQPVKGRAVAQMLANGVRLID 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIV 415
             Y     S+   +  + +  +GR I+V G  G+     +QG R  +G  A    D    
Sbjct: 337 DSYNANPASICAAIDVLASF-AGRTILVLGDMGELGEWAEQGHR-DVGAYAAGKVDTLYA 394

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       +   +     G     ++   I +          +++  KG
Sbjct: 395 VGP--------LMAHAVAAFGQGARHFPDQASLIESLRAEQGSGTTILI--KG 437


>gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
          Length = 455

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 140/385 (36%), Gaps = 28/385 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +I  V SDSR I    +FVA+ G + DGH F   A+  GA A++V+          
Sbjct: 19  GPDTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLAVENGANALLVTHE-------- 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P L+V +T+K +    + L        +A+TG++GK+SV   V  I  +     
Sbjct: 71  -LPLDLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKTSVKEMVATILSQRHKVL 129

Query: 145 FQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  G   + I       RL       + +  +                   +      + 
Sbjct: 130 YTAGNFNNEIGVPLTLLRLEEGDEFGVFELGANHRG---------------EIDYTSSLV 174

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
               +  N             A   A        L  +  A+I ADD++++ + + A   
Sbjct: 175 KPDVALVNNVASAHLEGFGSLAGVAAAKSEIFNHLSPDGTAVINADDSFARVMKEAASEH 234

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++              +  +    +S   ++     PL G  QV NAL AAG+C+
Sbjct: 235 KQLTFAIEAAADLQGSGLEPDLLGRYCFKMSYLNQEVSVTLPLSGRHQVSNALAAAGICL 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+  + ++  L  L  V GR            I   Y     S+   +  ++ I   R
Sbjct: 295 TLGLPLSEIVSGLSLLEPVKGRMLPTQLGRV-RVIDDSYNANPASVSAAIDWLQEIDGYR 353

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIA 406
            +V+   G  GD        +G++A
Sbjct: 354 CLVLGDLGELGDNASLLHTELGELA 378


>gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
 gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
          Length = 457

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 161/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA+A
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG+ A+VV    S            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGSVAVVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  + NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNIKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   +         E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVSGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
 gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
          Length = 470

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 145/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++        R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNIIGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 350 SPTALKTVLKTFMHM 364


>gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR
           15-3]
          Length = 473

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/496 (19%), Positives = 184/496 (37%), Gaps = 54/496 (10%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI+ +  F +       + +S DSR +  G +F  I G   DGH F   A AQGA  +VV
Sbjct: 10  LISAMDGFTVGCLPEVFSGISIDSRTLVEGDVFFCIKGRHLDGHDFATHAYAQGAGVLVV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +        ++  P++VV +  + L   A     +    I+A+TG+ GK++    +
Sbjct: 70  ----AQNRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +Q  + +G     +   +               P+ LA+           +   E   + 
Sbjct: 126 KQALETAGKVHANLSSLNNCWGV----------PLTLARM-----PIDSDYGIFEIGMNH 170

Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            D+ R  +  +       T +   H+++ +  +   +AK  +FE  L K   A++ ADD 
Sbjct: 171 KDEIRPLVKLVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEG-LDKNGIALLNADDH 229

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++K+A   G   +    Q  +     K+VC + N   + + +  KD       PG+
Sbjct: 230 FFSYLLKKAKQCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKIGAPGQ 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHT 365
             V N L     C A+G + A V+  L +  +  GR      +         I   Y   
Sbjct: 290 HMVQNGLSVLAACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDESYNAN 349

Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCG---GDR-DQGKRPIMGKIALDLADIAIVTDD 418
             S+   L           GR I + G     GD  ++  R ++  I +  AD+  +   
Sbjct: 350 PASMRAALDLLATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGK 409

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
             R      + +++   I       +  E        ++  D++++            + 
Sbjct: 410 EMR-----VLASDLSPHIT-VYHAQDIEEIFPLVFSEISNGDLIMI-----------KSS 452

Query: 479 EKKMSVDCDIIREILG 494
            +      +I+ EIL 
Sbjct: 453 HRIYLS--NIVNEILS 466


>gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus bromii L2-63]
          Length = 450

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 150/469 (31%), Gaps = 43/469 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  D    +  +  N   +     +  KI  V  DSR ++ G +F+AI G + DGH FI
Sbjct: 1   MK--DFTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  AQGA   +   A           +  P +VV +T   +         K    ++ +
Sbjct: 59  EKCFAQGAVCALCEKAPE--------NATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G+ GK+S    +  +  +   +    G  +               P+ L    S     
Sbjct: 111 SGSVGKTSTKEMLYAVLSQKFKTHKTQGNLN----------NELGVPLTLL---SMPEDT 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G      + ++      T +G  H++    +     AK  +F+     
Sbjct: 158 EAAVIEMGISDFGEMTRLSEMVQPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNAREN 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +    D      +K  +        +  +  F       +   K   T+  +  + 
Sbjct: 218 ADFIL--NGDDDKLSTVKTVNGKKPVFFGLDAKNDFYAKNIKNSGDGKVLATLCFDNNNI 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P  G + V NAL AA     +G+    +   +     V  R   + T         
Sbjct: 276 DVEIPAIGTYMVTNALAAAAAGKLLGLTDEEIANGVASYKTVGSRANVINTGKIKIIDDC 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S+   L  +  +  GR + + G     G  +       G  A       ++T 
Sbjct: 336 -YNANPTSVRASLDTLSNL-DGRKVAILGDMKELGSEELKLHFDTGVYAKSKGIGTVIT- 392

Query: 418 DNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    ++  E+  G  G  F    +    I   I      DV++V
Sbjct: 393 -------VGELAKELAKGADGKAFDTIEDAKPEILKTI---KSGDVVLV 431


>gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 455

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 136/392 (34%), Gaps = 33/392 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R+I+ G +F+A+ G   DGH F+ +A  +GA A VVS              N P
Sbjct: 25  NISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKGAAAAVVSEDKYR---------NLP 75

Query: 92  ILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           ++VV +T K L   AS           ++A+TG+ GK++    +  +  + G+S    G 
Sbjct: 76  VIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTTKDMLHTVLSQYGVSHVNDGN 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +          LT               +     + +  +  G  +             
Sbjct: 136 LN----NNIGLPLTILKAPE---------NCRYLILEMGMNKAGEIKELSKISNPNIAVI 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+   H++   +   +  A+ +L      K +  +I   D    + +    +       
Sbjct: 183 TNIEPVHVENFSS--LFDIAQAKLEILYGVKNNGTLILNKDNKYYDYLLSHVDRDVVSFG 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L  +               +  +    + G+  VY+ L    +   +G++ 
Sbjct: 241 RSESATVCLLNVIKNDKGLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAVVAVIQNLGLNL 300

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +   LE  ++  GR         G  I+     Y  +  S++  ++ +   ++ R + 
Sbjct: 301 SKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRTLGIYSNRRKVA 360

Query: 387 VFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414
           + G     G++       +    +    D   
Sbjct: 361 LLGDMLELGNKSITFHMKLLDSIVKYDVDKVY 392


>gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
 gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
          Length = 470

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 148/378 (39%), Gaps = 26/378 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    +   R L+ G                +    ++    + +   
Sbjct: 235 Y-----PHEETLLLGNIDGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFVTNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ TNS    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTNSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITSG 382
           +  +L+ +LK    + S 
Sbjct: 350 SPTALKTVLKTFMHMDSN 367


>gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
 gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
          Length = 460

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 88/476 (18%), Positives = 168/476 (35%), Gaps = 44/476 (9%)

Query: 6   LIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L  K   +L   +       Q    +IN V  DSR +  G +F+A+ G K D H F+   
Sbjct: 4   LTLKQLTKLTGGVLYHTSEQQAATCQINTVEIDSRKMVRGGLFIALKGEKFDAHDFVADV 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             QGA A++V+    +         + P +VV+NTR  +   A+ +  +    I+A+TG+
Sbjct: 64  AKQGAGALLVNRRLEI---------DCPQVVVENTRLAMGKLAAWVRQQSKARIVALTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+SV      I  + G + +  G  +               P+ L             
Sbjct: 115 SGKTSVKEMTAAILCQRGHTLYTAGNFN----------NDIGVPLTLF---RLTEEHQFA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+  G   +  +     +    NL   H++   +      AK  +F  L    + 
Sbjct: 162 VIELGANHIGEIAYTAEMTCPESALVNNLFAAHLEGFGSLAGVAKAKGEIFAGLSSAGTA 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            I    + ++      +        +V        +   +          +     + + 
Sbjct: 222 IINLDSNDWTHWQQGMSEPQAVWRFAVSPVPEADFYATDIQEQPLATSFCLHTPIGNIEV 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG+  + NAL A+ L I++G   + +   L +L  V GR   +        +   Y
Sbjct: 282 TLPLPGKHNIANALAASALAISVGASLSDIRAGLLELKPVSGRLFPIRLAEGKIVLDDTY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKI-ALDLADIAI----- 414
                S+      +  +    ++VV   G  GD+       +G+  A    D  +     
Sbjct: 342 NANIGSMIAAANTLSQMPGYHVMVVGDMGELGDQTVECHRQVGEALASTKIDKIMSVGEF 401

Query: 415 ---VTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQ 459
              +++ + R +        +   +P          + KG+R  A+   +  L + 
Sbjct: 402 SSHISETSGRGQHFANKAELVAALLPLLEQHEMISILIKGSRSAAMEEVVNTLKEN 457


>gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 452

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/467 (15%), Positives = 162/467 (34%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S+   +  + T+ +GR I++ G     G+  +     +G    +     + T  N  
Sbjct: 338 SPTSMRAAIDTLSTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + + I       +       ++ + I   I  L   D ++V  KG
Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLV--KG 437


>gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 452

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 132/404 (32%), Gaps = 26/404 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS      
Sbjct: 15  LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A        L VD+T   L   A          +  +TG+ GK++V   +  + +R 
Sbjct: 75  LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 126

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                        ++           P+ L              + +  +  G       
Sbjct: 127 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K  A    N  R H+                    L  +  A+I  +DA       + 
Sbjct: 177 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KT 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G     +  + +       +  +    +    + P+PG   V+NA  AA 
Sbjct: 235 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A G+    V E L+    + GR            I   Y    +S+   +  +  + 
Sbjct: 295 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMRAAIDVLARMP 354

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
           + R I V G  G+  + +   M       A     + A    DN
Sbjct: 355 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
 gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
          Length = 463

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 132/381 (34%), Gaps = 26/381 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+D+R I +G +FVA+ G   DGH ++  A   GA A VV  A             
Sbjct: 28  FQGVSTDTRRIASGDVFVALRGENFDGHDYLAVAEKAGAVAAVVDKADPSM--------G 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V +T   L+  A           +A+TG+SGK++V   V  I  + G +    G 
Sbjct: 80  LPQIRVSDTIDALAQLALANRNASTARFVAITGSSGKTTVREMVAAILSQVGNTLATEGN 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            +P                +  + + AS  G   H ++ ++      
Sbjct: 140 LNNHIGVPLTLFRLSPE-------------HQLGAIELGASGLGEIAHTVNIVRPEVVIL 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++          A      +  P+    ++ +DD       +RA       +S
Sbjct: 187 TNAGQAHLEGFGGYDNVVRA-KGEIIDGAPETGLVVLNSDDPAFDLWRQRAGQRRVAGVS 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGI 327
                   ++          ++  +     +     L  +    + NAL+A      +G 
Sbjct: 246 GRASEGADYVPNDIHSDGDVRMFCAQGPDGWSCDVRLSLQGEHNITNALLAIAAARELGA 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D+  +   L  L  V GR + +    +   I   Y     S++  L  +    + R+ V+
Sbjct: 306 DNEAIKAGLAALKPVKGRLQMMVLTPKLTVIDDSYNANPASMKAALDVLAARPASRVAVL 365

Query: 388 --FGCGGDRDQGKRPIMGKIA 406
                 G         +G+ A
Sbjct: 366 GAMAELGQDSLALHREIGEFA 386


>gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 457

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 163/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S          + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEISYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQGSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL J1-023]
          Length = 470

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 148/378 (39%), Gaps = 26/378 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V+NT   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVPNP------PTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    +   R L+ G   +            +    I+    D +   
Sbjct: 235 Y-----PHEENLLLGNVDGDFRQLTFGKSDEAEIYPLEIRAEAEGTSFITNWEPDLEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITSG 382
           +  +L+ +LK    + S 
Sbjct: 350 SPTALKTVLKTFMHMDSK 367


>gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes Finland 1988]
          Length = 466

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 10  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 69

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 70  EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 124 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPY-TILTMPEDTEVAVLEMGMNHRHEIE 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 183 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 230

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 231 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 286 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 345

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 346 SPTALKTVLKTFMHM 360


>gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 471

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/409 (20%), Positives = 150/409 (36%), Gaps = 30/409 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  +  +   ELI              I  VS+D+R I    +F+A+ G   DGH FI  
Sbjct: 6   LTWIAQQVQGELIRSEKSI---AANAIIQGVSTDTRQINPDDLFIALSGPNFDGHKFIDT 62

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A   GA A++VS     +            ++V +T++ L      +  +     +A+TG
Sbjct: 63  AAQGGAVAVIVSRKVDTE---------LAQILVSDTKEALGRLGQAIKREVAPKTVAITG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   V  I  R G      G  +               P+ L       +    
Sbjct: 114 SSGKTTVKEMVAAILSRRGKVLATKGNFN----------NDIGVPLTLL---RLEADHEF 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V + A+  G   +  + +K    +  N    H++   +      A      + L K+ 
Sbjct: 161 AVVELGANHLGEIAYTTELVKPDVATIVNAAAAHLEGFGSLLGVARA-KSEIFKGLGKDG 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI  AD  +      +  +   +  S   +  +     V  ++      +         
Sbjct: 220 LAIFNADSQFYAFWHGKYEHLRNQAFSTKDEADYYAQDVVLGLNGCADFLMVTPLGKVSI 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PLPG   V NALV+A L I +G +   V   L+ +  V GR +    + +   +   Y
Sbjct: 280 SLPLPGLHNVSNALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQVKQLSGQVKVLDDTY 339

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
                S+   +  + +  +GR ++V G     G+R +     +G+ A +
Sbjct: 340 NANVASVNAAIDLLGSF-AGRKVLVLGDMAELGERARFYHQQVGEYAKE 387


>gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
 gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
          Length = 456

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 83/472 (17%), Positives = 164/472 (34%), Gaps = 42/472 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++  ++ N +        +++I+ +++DSR I+   +FV IVG + D H FI
Sbjct: 1   MK--NLTLRNLTKVCNGIWHGDNALLDQEISAITTDSRKIEKDCLFVPIVGERVDAHRFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  + +GA A +        D++         + VD + + +   A     +    ++ +
Sbjct: 59  PDVMTKGALATLSERELPEADYA--------YIQVDASLQAVKDIAEFYLEQLQIPVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + +    +    G  +               P+ + +        
Sbjct: 111 TGSVGKTSTKEVIASVLKEKYRTLKTQGNFN----------NELGLPLTVFRLRDE---D 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S  G         K      TN+G  H++    +     AK  +F+ + P 
Sbjct: 158 QIAVLEMGISDFGEMARLTKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQSMKPN 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +    D      ++  +        +  +      +            I +    F
Sbjct: 218 GHIVL--NGDDDKLITVREYNGVKPVFFGLNSERDVYADQIESKGLKGVACRIHLGEDAF 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D L P PG   VYNAL AA +    G+    +   +E L  + GRF           + V
Sbjct: 276 DVLVPTPGIHMVYNALAAAAVGRIYGLTIEEIRRGIESLETIRGRF---KMIETDKFLVV 332

Query: 361 D--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAI 414
           D  Y     S++  L  +     GR + + G  G+  + +  +   + +  A    D  +
Sbjct: 333 DDCYNANPMSMKASLDVLHD-GEGRRVAILGDMGELGEDEAALHEGVGIHAAICGIDACV 391

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
              D         I        P      +  R   +    + + K D ++V
Sbjct: 392 CVGDL-----AVHIAEAARKANPDFPVYYEKTRESLLEHLNDYVQKGDTILV 438


>gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
 gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           35/02]
 gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI18]
 gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA6140]
 gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID24-1]
 gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI2]
 gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
          Length = 452

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS      
Sbjct: 15  LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A        L VD+T   L   A          +  +TG+ GK++V   +  + +R 
Sbjct: 75  LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 126

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                        ++           P+ L              + +  +  G       
Sbjct: 127 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K  A    N  R H+                    L  +  A+I  +DA       + 
Sbjct: 177 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KT 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G     +  + +       +  +    +    + P+PG   V+NA  AA 
Sbjct: 235 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A G+    V E L+    + GR            I   Y    +S++  +  +  + 
Sbjct: 295 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMP 354

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
           + R I V G  G+  + +   M       A     + A    DN
Sbjct: 355 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes FSL R2-561]
          Length = 470

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 350 SPTALKTVLKTFMHM 364


>gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola]
          Length = 453

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 148/402 (36%), Gaps = 25/402 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + I  ++   +  ++  I+E+  +++ I  G +F+A++G   D H+FI  AI +G  AI+
Sbjct: 7   KTIASITNGQLYGKDLLIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDAIKKGCSAII 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
                        I+S+   ++V NT   L   A+ +  +    ILA+TG+ GK++V   
Sbjct: 67  THK---------HIKSHISYIIVQNTSFALGQIANWIRNQTNAKILAITGSCGKTTVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I ++ G +   IG  +               PI L +            + + A+  
Sbjct: 118 TASILRKYGNTISTIGNLN----------NNIGVPITLLQ---LNKYHKYAVIELGANQP 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +  +  +       N+   H+   ++      AK  +F  L P     I      +
Sbjct: 165 GEISYISNMTQPEIILINNIQYSHLQGFKSLLGVSQAKSEIFSGLKPNGKVIINLDSHHF 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           SK      +N          Q        +          +       +   P  G   +
Sbjct: 225 SKWKKNIKNNHVIYFSIKKKQNSNFFSSNITIDSYGTTFVMHTPNGTINISLPFLGYQNI 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A+ L  A+ I   ++   L    ++  R + +  N     I   Y     S+   
Sbjct: 285 SNALAASALAFALKIPLNIIQIGLADTPIISRRLQSIILNPDKILIDDTYNSNVASMITA 344

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADI 412
           +K +  +   +I+V+      G+       ++G  A +L+DI
Sbjct: 345 IKVLEKMPGYKILVIGDMSELGENSFLYHRMIGN-AANLSDI 385


>gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 452

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      P++ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNTLVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTNDLKAHDCVLV--KG 437


>gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 470

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPY-TILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 350 SPTALKTVLKTFMHM 364


>gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 452

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS      
Sbjct: 15  LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A        L VD+T   L   A          +  +TG+ GK++V   +  + +R 
Sbjct: 75  LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 126

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                        ++           P+ L              + +  +  G       
Sbjct: 127 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K  A    N  R H+                    L  +  A+I  +DA       + 
Sbjct: 177 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KT 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G     +  + +       +  +    +    + P+PG   V+NA  AA 
Sbjct: 235 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A G+    V E L+    + GR            I   Y    +S++  +  +  + 
Sbjct: 295 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAIDVLARMP 354

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
           + R I V G  G+  + +   M       A     + A    DN
Sbjct: 355 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 503

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 94/456 (20%), Positives = 156/456 (34%), Gaps = 37/456 (8%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P+      I+ +S D+R ++AG  F AI G++ DGH F+  A   GA   VVS     Q 
Sbjct: 19  PLGDLPAAISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTAATKAGAALHVVSE----QK 74

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A  R  +P+L+VD+  K +S  A     +    I+AVTG+ GK++    ++      G
Sbjct: 75  LPALGRVQSPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGKTTTKEALRHGLAAEG 134

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                    +               P+ LA               +  +  G  +  +  
Sbjct: 135 KVHASAASFNNHWGV----------PLSLA---RLPRDARFAIFEIGMNHPGEIRPLVKL 181

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T +   H+ + +       AK  +FE  L  +  AI+ ADD     +   A 
Sbjct: 182 VRPHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEG-LVSDGTAILNADDPQCGPLATMAR 240

Query: 262 NAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            AG           G    L           +  ++ G+         G     N L   
Sbjct: 241 KAGVTEIRTFGESAGADFRLLSFAPTGEHSVMEANMGGETVRVELTSRGRHMAQNVLAVL 300

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILK- 374
           G       D   V   L+    V GR   + +   + G    +D  Y     S+   L  
Sbjct: 301 GAASLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESYNANPASMRAALDV 360

Query: 375 --NIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKI 428
               R    GR I V G     GD+  G    + + I     D+  +  D        K 
Sbjct: 361 LSASRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFLAGD------EMKA 414

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +++          N  E + + ++ +   DV++V
Sbjct: 415 LDDVLESRVRREWHENAGELLESLLKTMRTGDVVMV 450


>gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
 gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
          Length = 468

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 148/451 (32%), Gaps = 47/451 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +++D+R++Q G  F+A+ GN  DGH F+ +AI +GA  ++V   Y+L      + +N
Sbjct: 30  ITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNSEIQQLSNN 89

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            PIL V+NT K     A     +    +++VTG+ GK++    +          +  +  
Sbjct: 90  IPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELI----------AEVLAT 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +     +          L +  +    +    V +     G             G  
Sbjct: 140 QGKVMKTEANYNNEIGVAKTLLQLSNE---ENYAVVEMAMRGPGEIAELTHIANPTIGLI 196

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI    + +A   AK  L  E+       + Y +    +   K           
Sbjct: 197 TNVGTAHIGRLGSVEAIAEAKCELLREMSDSSIAILNYDNQRLIETAAKVWSGETFTYGL 256

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G   +   +            TI+VEG D     P       Y A +A    +      
Sbjct: 257 EGGNLQGKLI---------DSQTINVEGVDLPLPLPGSHNASNYLAALAVLKVLHGKNIP 307

Query: 330 ALVLEH----LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           A  L         + +   R       +    +   Y     S+   L  +      R I
Sbjct: 308 AKTLFQSLTNNLFVQLPGSRARKYDLKNDIVILDESYNAGLESMIAALNLLAETPGKRHI 367

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIP--GF 439
            V G     G++       +G +  +L  D   +  D    E+       +  G     F
Sbjct: 368 AVLGTMKELGNKSILFHQQVGNVVKNLNIDGLFILAD---FEE----AKAMATGAASLQF 420

Query: 440 IEKGNRIE-------AIRTAIEMLNKQDVLV 463
           I+  N          A +   E L   D ++
Sbjct: 421 IKVENITADNAHHNLA-KYLQEFLQPGDRVL 450


>gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2846]
          Length = 457

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
 gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
          Length = 463

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS      
Sbjct: 26  LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 85

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A        L VD+T   L   A          +  +TG+ GK++V   +  + +R 
Sbjct: 86  LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 137

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                        ++           P+ L              + +  +  G       
Sbjct: 138 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 187

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K  A    N  R H+                    L  +  A+I  +DA       + 
Sbjct: 188 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KT 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G     +  + +       +  +    +    + P+PG   V+NA  AA 
Sbjct: 246 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A G+    V E L+    + GR            I   Y    +S++  +  +  + 
Sbjct: 306 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMP 365

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
           + R I V G  G+  + +   M       A     + A    DN
Sbjct: 366 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 408


>gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 455

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 121/410 (29%), Gaps = 37/410 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+   L+       E  I  V+ DSR I  G +FV I G + DGH F+
Sbjct: 1   MKMQ------LAEIAQALNTSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +  + +  +           +L V +T K +   A     K    ++ +
Sbjct: 54  GSAIEAGASATLWEAGHPNK------PEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLAKRFNVYKTQANFNNE--------------IGVPMTILEMKPI 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +     +   +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHELSQLARPDVAVITMIGEAHIEFFGSRDKIADAKMEITDFLQE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     ++        +  S         +               + G D 
Sbjct: 214 DGEFIYNGDEP----LLAERAAKLSQDKSTFGFADSDSIHASDLRSTMHHSFFKINGTDR 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G   V NA+ A  +    G     +   L        R E+   +     +  
Sbjct: 270 EFSIPMIGRHNVANAMAAILVGRHFGESDGEIAAGLANFVPTANRMEWEKGDCGEDIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGK 404
            Y     +++ +  +   +     GR I V       G R       +  
Sbjct: 330 IYNSNPTAVKAVTASFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAA 379


>gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
 gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
          Length = 470

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 145/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                  + P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVPNP------PMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 350 SPTALKTVLKTFMHM 364


>gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP
           32953]
 gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 458

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 153/391 (39%), Gaps = 27/391 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I EV+ D+R + AG +FVA+ G + DGH F   AIA GA A++VS           +
Sbjct: 26  DIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSK---------RL 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVV +TR  L  FA+ +  + P  I+A+TG+SGK+SV      I ++ G   + 
Sbjct: 77  LVGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYT 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +               P+ L +  +         + + A+  G   +  D  +  +
Sbjct: 137 AGNFN----------NDIGVPLTLLRLTAE---HDFAVIELGANHVGEIAYTTDLSRPES 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               NL   H++   +      AK  +F  L    +  I    + +        +    R
Sbjct: 184 ALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHNKRVWR 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +    +   V         T+           PLPG+  + NAL AA L +++G
Sbjct: 244 FSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANALAAAALAMSVG 303

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D A V + L +L  VPGR   V        +   Y     S+    + +  +   R++V
Sbjct: 304 ADLAAVRQGLAQLQAVPGRLFPVPLAEGKLLLDDSYNANVGSMIAAAQVLAEMPGYRVMV 363

Query: 387 V--FGCGGDRDQGKRPIMGKIALDLA--DIA 413
           V      G+        +G+ A  LA  D  
Sbjct: 364 VGDMAELGETAADCHRQVGE-AAKLAGVDKV 393


>gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 463

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 139/424 (32%), Gaps = 32/424 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 12  MKPLDL------NFICQALKLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFV 65

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              ++ GA A+VVS         A        L VD+T   L   A          +  +
Sbjct: 66  GGVLSAGAAAVVVSREDCAALGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  + +R              ++           P+ L          
Sbjct: 118 TGSGGKTTVKEMLAAVLRRRFGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKH 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  +  G         K  A    N  R H+                    L  
Sbjct: 168 RYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCS 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  +DA       +         + G     +  + +       +  +    +  
Sbjct: 228 DGMALIPQEDANMAVF--KTATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERT 285

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + P+PG   V+NA  AA L +A G+    V E L+    + GR            I  
Sbjct: 286 AVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDD 345

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIV 415
            Y    +S++  +  +  + + R I V G  G+  + +   M       A     + A  
Sbjct: 346 TYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYF 404

Query: 416 TDDN 419
             DN
Sbjct: 405 VGDN 408


>gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosomonas eutropha C91]
 gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosomonas eutropha C91]
          Length = 457

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 154/397 (38%), Gaps = 19/397 (4%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            +   +             VS+DSR ++ G +F+A+ G + DG  FI  AI +GA A +V
Sbjct: 8   ALALHANSNWSGGNPIFTGVSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEKGAVAAMV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S+   +       +S+   + V++TR      A+         ++AVTG++GK++V   +
Sbjct: 68  STDTVI----VPTKSDFGWIKVNDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVKEMI 123

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I +    S   +  T  +++                  L   +      + +  +  G
Sbjct: 124 AAIFRHEFGSGNVLATTGNLNNDIGVP----------QMLLQLNTGHTCAVIEMGMNHAG 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +            TN G  HI++  T +A   AK  +F   L  +  AII ADDAY+
Sbjct: 174 EIAYLSQLAAPTIAVITNAGTAHIEHLGTTEAIARAKGEIFTG-LGAQGIAIINADDAYA 232

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +    R      ++L  G         +  +  ++    + +     +    +PG   +Y
Sbjct: 233 QLW--RQLAGSRQILDFGITNPAAIRAQQMSSSSEAAWLLQLPDDKVEITLQVPGRHNIY 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA    A GI +  + E L      PGR +      +   I   Y    +S++  L
Sbjct: 291 NALAAAAAATAAGISTTSIAEGLHNFMGTPGRLQKKVGLYQSILIDDTYNANPDSMQAAL 350

Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
             +  +   +I+++   G  G    G    +G+ A  
Sbjct: 351 NVLAEMPGKKILIMGDMGELGTDAAGFHYTIGQQAAK 387


>gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
 gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
          Length = 470

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 350 SPTALKTVLKTFMHM 364


>gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes L99]
          Length = 470

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 146/375 (38%), Gaps = 26/375 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTI 379
           +  +L+ +LK    +
Sbjct: 350 SPTALKTVLKTFMHM 364


>gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM 10]
 gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis FV-1]
 gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis CO92]
 gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10]
 gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CO92]
 gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D106004]
 gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D182038]
 gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 458

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 153/391 (39%), Gaps = 27/391 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +I EV+ D+R + AG +FVA+ G + DGH F   AIA GA A++VS           +
Sbjct: 26  DIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDAIAAGAGALLVSK---------RL 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P LVV +TR  L  FA+ +  + P  I+A+TG+SGK+SV      I ++ G   + 
Sbjct: 77  LVGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSSGKTSVKEMAAAILRQCGNVLYT 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +               P+ L +  +         + + A+  G   +  D  +  +
Sbjct: 137 AGNFN----------NDIGVPLTLLRLTAE---HDFAVIELGANHVGEIAYTTDLSRPES 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               NL   H++   +      AK  +F  L    +  I    + +        +    R
Sbjct: 184 ALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHNKRVWR 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 +    +   V         T+           PLPG+  + NAL AA L +++G
Sbjct: 244 FSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANALAAAALAMSVG 303

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D A V + L +L  VPGR   V        +   Y     S+    + +  +   R++V
Sbjct: 304 ADLAAVRQGLAQLQAVPGRLFPVPLAEGQLLLDDSYNANVGSMIAAAQVLAEMPGYRVMV 363

Query: 387 V--FGCGGDRDQGKRPIMGKIALDLA--DIA 413
           V      G+        +G+ A  LA  D  
Sbjct: 364 VGDMAELGETAADCHRQVGE-AAKLAGVDKV 393


>gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 477

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 141/416 (33%), Gaps = 28/416 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+   L I P    +  +  VS DSR ++ G +FVAI G + DGH FI  A   GA 
Sbjct: 12  TGAEIARALGIAPP-AADVVVTGVSIDSRTVERGDLFVAIKGERSDGHRFITAAFDNGAA 70

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +VS  Y+       + ++ P+  VD+    L         +    I AVTG+ GK++ 
Sbjct: 71  GALVSRDYA---PQVPLAADEPLFRVDDPFAALEELGRVARARTDARIAAVTGSVGKTTT 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ +          +G +    +  +        P+ LA+  +           +  
Sbjct: 128 KEMLRVM----------LGESGPTHASVKSYNNFMGVPLSLARMPAASR---FGVFEIGM 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G        ++      T +   HI++  ++     AK  +FE  L +   AI+ AD
Sbjct: 175 NHAGEIVPLAKLVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEG-LEQGGAAILPAD 233

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           + + + +   A     RV+  G   +    L           VT  +  +   F    PG
Sbjct: 234 NPHFESLAAFARERSARVVPFGLSSEAEARLVSFERTEEGSVVTADIFDQRVTFALAAPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHT 365
                NA+ A      +G +       L +     GR         RG  + +D  Y   
Sbjct: 294 RHLAQNAVAALAGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYNAN 353

Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
             S+   L     +      R I V G     G         +       A   + 
Sbjct: 354 PASMHAALDVLGAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAIDLVF 409


>gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
 gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
          Length = 463

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 165/446 (36%), Gaps = 39/446 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S       P+
Sbjct: 26  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A+         ++A+TG++GK++    +     + G   +     + 
Sbjct: 80  VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +          T                    + +  +S G         +      TN+
Sbjct: 140 LIGMPLYAANLTEDA-------------EFVVLEMGMNSPGEVDALSRIARPDVAVITNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   R++S G 
Sbjct: 187 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFG- 244

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    ++          VT    G++  +          Y+  + A +  A  ID    
Sbjct: 245 VGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAVGHAFSIDLTQA 304

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTITSG---RIIV 386
              +E+   + GR +   T  +G  I      Y     S+   ++N+  +      R + 
Sbjct: 305 RGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 364

Query: 387 VFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           + G   +   G     R ++ +I     D+   T  +      + +   +  G       
Sbjct: 365 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVY-TVGSHMLALYDVLPQHLRGG-----HF 418

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +  EA+     ++   D ++V  KG
Sbjct: 419 ADHGEALAHLERIIKPGDGVLV--KG 442


>gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
 gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
          Length = 463

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 147/385 (38%), Gaps = 21/385 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL +  S   +  ++  + +VS+D+R      +F A+ G   D H ++ QA+ 
Sbjct: 1   MIKLSTKELADIFSARLIGAKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P L+V +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCSAVVVERECDV---------DVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q+       +  T    +      LT            +        +
Sbjct: 112 KTTVKEMTASILQKVVQDPDAVLFTQGNFNNDIGVPLTLL---------RFEPKHQFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +D ++       N+   H++   + +    AK  +++ L  K    +
Sbjct: 163 ELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYQGLNGKGIAIM 222

Query: 246 IYADDA-YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFL 303
            Y     + K   ++  +A  R+ S   +    + +++       Q  +   E  + +  
Sbjct: 223 EYEHSVLWKKYWHEQIGDAETRLFSTQGKKSDYYAQEIRLTETGSQFKLCCTEHGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G   V NA+ AA L + +G+    +   LEK   V GR   +        +   Y 
Sbjct: 283 LPYLGLHNVSNAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPNLLLLDDTYN 342

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVV 387
              +SL+  +  +R      RI  V
Sbjct: 343 ANVSSLKSAIDVLRQYDKFFRIFAV 367


>gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 452

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 161/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I   I  L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLV--KG 437


>gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
 gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
          Length = 449

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 132/421 (31%), Gaps = 32/421 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+D+R I    +F+A+ G   DG+ F  QA+A GA   +V  A   +   A+     
Sbjct: 19  TGVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVDDAAVAERDRASGTD-- 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+V +    L   A          ++ +TG++GK++    +  +  +        G  
Sbjct: 77  RCLLVADGLTALQDLARHHRQTFTFPVIGLTGSNGKTTTKELIAGVLSKKYNLYATAGNL 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +          LT  S     +                  S  L  H L          T
Sbjct: 137 NNH----IGVPLTLLSLNEQHELAIIEMGANHQKEIAFLCSIALPTHGL---------IT 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++     +     K  L++ L        I + D     + +    +     + 
Sbjct: 184 NIGKAHLEGFGGIEGVRIGKGELYDYLAQNAKTVFINSRDKTLMAMYRERLKSIRSETTF 243

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +               +  V  K+    +    LPG +   N L A  +    G+
Sbjct: 244 AEAIFYPAANPDEETTTLISESPVVVYKNASGHEITTHLPGRYNFNNMLAALAIGDYFGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                   +   +    R + V        +   Y    +S+   ++      + R  V+
Sbjct: 304 SPEEANRAIADYNPTNNRSQQVIKG-TNTVLLDAYNANPSSMAAAIQQFAATPAKRKAVI 362

Query: 388 FGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            G     GD  + +   +GK IA    D+ I+   + R           +  +P      
Sbjct: 363 LGDMYELGDESEAEHAALGKLIAESNFDLVILAGKDMRF---------ALEYLPKAYYFP 413

Query: 444 N 444
           +
Sbjct: 414 D 414


>gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 457

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 92/472 (19%), Positives = 175/472 (37%), Gaps = 43/472 (9%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                  + P+++V++T   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    N   R L+ G                +    I+    + +   P
Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTITS--GRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIVTDDN 419
             +L+ +LK    + S      +V       GD          ++    + +   +    
Sbjct: 338 PTALKTVLKTFMHMNSSGKPKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFL---- 393

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTA-IEMLNKQDVLVVAGKG 468
               D  K   +I       G +   N  E++ TA +  +N  + ++V  KG
Sbjct: 394 --YGDAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSEMNGNEWILV--KG 441


>gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
 gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
          Length = 457

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 148/406 (36%), Gaps = 25/406 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  +     Q   +++  +++D+R +  G +F+A+ G   DGH FI +A  +GA  ++
Sbjct: 4   DWLANVLTTDYQGDNQQVLNINTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAIGVI 63

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V     +         +    +V++TR  L    + +  +     +A+TG+ GK++V   
Sbjct: 64  VDHKVDV---------DIAQFIVNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I    G      G  +               P+ L              + + A+  
Sbjct: 115 CAAILSVHGDVLATKGNFN----------NDIGVPLTLL---RLEPQHRFAVIELGANHL 161

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +     K       N+   H++   +      AK  +F+  L +   AII  D  +
Sbjct: 162 GEIAYTTAMAKPDVAVVCNVAPAHLEGFGSLMGVAKAKGEIFDG-LKENGVAIINCDSEF 220

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S+  + +      +  S   +            + +   T+  + K       LPG+  +
Sbjct: 221 SQYWLDKLEGRNIKRFSTSEKLDIWAEDISLDANARASFTLCTKQKKVPVTLALPGKHNI 280

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL+AA L   + +    +   L  +  V GR   +  +     +   Y     S++  
Sbjct: 281 SNALIAAALTSELDVTLDDIAHALATMGDVKGRVNLIEVSDMLTVVDDTYNANVKSVKAA 340

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  +  +   RI+ +   G  G+  +     +G+ AL+     + T
Sbjct: 341 IDLLSDMQGHRILALGDMGELGEDARKYHQEVGEYALEKGIDELFT 386


>gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
 gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 450

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 87/462 (18%), Positives = 148/462 (32%), Gaps = 46/462 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +   D   L   L           +  V +D+R +  G +FVA+ G + DGH +  QA+A
Sbjct: 1   MFEIDTQTLQTLLGAEAEGTLPMSVRGVGTDTRALAPGALFVALRGERFDGHDYARQAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  ++     +            P L V +T +     A     +    ++AVTG++G
Sbjct: 61  GGAALVIAERPVA-----------VPHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAG 109

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    ++ +   +G      G  +      +     T              +     V
Sbjct: 110 KTTTRELIRAVLATAGPVLAPPGNENNDVGVPKLLLQLTG-------------AHRYCVV 156

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +     G             G  TN+G  HI    +  A  +A        LP    A+
Sbjct: 157 EMGMRGPGEIARLARCAAPNVGVITNVGSAHIGRLGSHAAIADA-KCELLAELPCSGIAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D       +R          +           V    +                 P
Sbjct: 216 LNGEDERLLSTARRHWAGPVLTYGLDAGDVMGSFDGVHLHVDGIAFI-----------PP 264

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N L A  +   +G++   V E L+ L +  GR   +        I   Y   
Sbjct: 265 LPGRHNHLNFLAALAVARHLGLELLQVRERLKDLQLPTGRSRVIALEGDVQLIDETYNSA 324

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPR 421
             S    L  +  +  GR I V G     G+  +    ++G+    LA D  +V +    
Sbjct: 325 PESARAALAWLAGL-PGRRIAVLGQMRELGEFSRELHRVLGEHCRRLALDEVVVLE---A 380

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            ED E + A     +P      +R  A     + +   D L+
Sbjct: 381 GEDTEALLAG-AGDLPAVQLADHRAVA-AYLADRVRPGDRLL 420


>gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
 gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
          Length = 452

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/467 (15%), Positives = 160/467 (34%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G                  P+ + +  +      ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN----------YNNEIGLPLTVLELDND---TEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLIYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S+   +  + T+ +GR I++ G     G+  +     +G    +     + T  N  
Sbjct: 338 SPTSMRAAIDTLSTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + + I       +       ++ + I   I  L   D ++V  KG
Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLINDLKAHDRVLV--KG 437


>gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
 gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
          Length = 465

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 162/415 (39%), Gaps = 28/415 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++  +  +     P    ++++  V+ DSR ++  ++F+AI G + + H FI
Sbjct: 11  MK--NLTLRNITKACHGEYRGPENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I +GA  ++               ++ P ++V++T + L   A          ++ +
Sbjct: 69  PDTIKKGAMCVISHEDLG--------ETDFPYILVESTGQALLDTAKLYRDSFDIKVVGI 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +       +G  +               PI + +        
Sbjct: 121 TGSVGKTSTKEMIASVLSQKYCVHKTLGNFNNEW----------GLPITIFEM---NEKH 167

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  +  G +  RL  +        TN+G  H+++ +T++     K ++ +++  
Sbjct: 168 QVAVLEMGVNHFG-EMRRLSSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKT 226

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  +   DD        +  +     L    Q     ++ +    +   + +   G+ 
Sbjct: 227 GGSILLNGDDDLLRDMGPVKGVDPEFFGLGKNCQFYATDVESLGLRGSSCTIHL-PSGES 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           FD + PLPG   V NAL    +   +G+  A +   +E L  +PGR   + T+       
Sbjct: 286 FDCIVPLPGAHMVQNALAGTAVGYQLGLTPAEIKAGIEGLPSIPGRNNIIQTDKIIILDD 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             Y     S++  L  +  +  GR + V G  G+  +  + +  +      DI I
Sbjct: 346 C-YNANPISMQASLDVL-NMAIGRKVAVLGDMGELGETGKELHYETGAHAGDIGI 398


>gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
 gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
          Length = 457

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 148/415 (35%), Gaps = 26/415 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  +     ++   I   +     IN VS+D+R ++ G +FVA+VG + D H F  QA+
Sbjct: 3   DVSLEQICSAVSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A A++V     L         N   +VV++T+  L   ++ ++ +     +A+TG+ 
Sbjct: 63  EANASALLVERKLDL---------NITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSC 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   V  I Q+ G   F  G  +               P+ L       ++     
Sbjct: 114 GKTTVKEMVASILQQRGKVLFTAGNFN----------NDIGVPLTLL---RSEANDDYAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +    +K       N+   H++   +      A      + L  +  A
Sbjct: 161 IELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQA-KGEIFQGLAADDTA 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303
           I+  +            +      S          K +C     +    +          
Sbjct: 220 IVNLESNGGDFWNDVLADKSVLTFSESDSKADYFAKNICINEQGEACFDMQTPQGSIFVE 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G+  V NAL AA L I  G     V   L  L  V GR E    +     I   Y 
Sbjct: 280 LGIIGQHNVANALAAAALSIQFGASLDEVKNGLANLISVKGRVEVQQLSQNIKLIDDSYN 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +++   K + +    R +++      GD        +G+ A   A   ++T
Sbjct: 340 ASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT 394


>gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 460

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/473 (15%), Positives = 164/473 (34%), Gaps = 38/473 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L  +      E+++        +   +I  +  DS+ I+ G +FV I+  K DGH ++ 
Sbjct: 6   NLIQIQLNKLEEVVDGEG-LQESFHNIEIQGICIDSKKIKKGNLFVPIIRVK-DGHDYVK 63

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+  GA A +   +Y             PI+ VD+T   L   A     +   N++ +T
Sbjct: 64  EAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRKELNVNVIGIT 117

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++V   +  I   +       G  ++              P+ + +         
Sbjct: 118 GSNGKTTVKDIINTILSTTYRVHKTKGNFNSQ----------IGLPLTILEMKRDTE--- 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +E       Q R                              AK +L      K+
Sbjct: 165 --FLILEMGMSEKGQIRNLSKIAQPDVAIITMIGQSHLETLGSREEIAKAKLEIIDGLKD 222

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               +Y  D     ++ +  N          +             ++  +   +   +  
Sbjct: 223 EGLCLYNGDE---PLLLKNKNLSSINCKAFGEKYTNDFFPTNVQLDEYGIHFKLNDSNIQ 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  PL G+  + NA+V   +     +    + + L ++++   RF+F+   +    I   
Sbjct: 280 YDVPLHGKHNILNAIVGIAIGQYYNVPVEKIQKALRQVNITHMRFQFLTAKTGFTIINDA 339

Query: 362 YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
           +  + +S++  ++  +T+    + I+V G     G   +     +GK+    +   + T 
Sbjct: 340 WNASPSSMKAAIETFQTLNAYKKKIIVIGDMLELGKNAETYHREIGKMLNQESIQYVFT- 398

Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E  E +  E              ++ +     ++++ K+D++++  KG
Sbjct: 399 ---YGELAEIVAEEARKKYDSGKVQSFNSKAKIAEEVLKVITKKDIVLL--KG 446


>gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
 gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
          Length = 453

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 160/463 (34%), Gaps = 41/463 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  +S   +   +  + +V +D+R + AG +FVA+VG + D H F+  AIA GA+A++VS
Sbjct: 9   LATVSGGKLYGSDITVGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDAIASGAQALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +      +          +TR       + +  +    ++A+TG+SGK+SV     
Sbjct: 69  KHLPVAVPQVVVA---------DTRIAFGQLGAWVRQQAKARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G + +  G  +            T                    + + A+  G 
Sbjct: 120 AILRECGETLYTAGNLNNDFGVPMTLLRLTKD-------------HDYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D  +       NL   H++   +      AK  +F  L    +  I    +  + 
Sbjct: 167 IAYTTDLTRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFAGLPAHGTAIINADSNDLAN 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +       R               +    +    T+     D     PLPG   + N
Sbjct: 227 WQPQLVGKTLWRFSPQPQAEVEFGASDIQLRADATSFTLHTPRGDIAITLPLPGRHNIAN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA L +++    + +   L KL  VPGR   V        I   Y     S+    +
Sbjct: 287 ALAAAALALSVDAPLSAIQAGLTKLQPVPGRLFPVRLAEHQLLIDDSYNANVGSMTAAAQ 346

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVT-------DDNP-RSE 423
            +  +   R++VV      GD  +     +G+ A     D  + T        DN    E
Sbjct: 347 VLGDMPGYRVMVVGDMAELGDEAEACHRQVGEAAKAAGIDCVLSTGSLSQLISDNSGNGE 406

Query: 424 ---DPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNK 458
              +   +   +   +    E      G+R  A+   ++ L +
Sbjct: 407 HFANKAALIERLRTLLSEHQEITILIKGSRSAAMEQVVQSLQE 449


>gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 457

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQTKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S          + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  + NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNIKNALAATALAMNVGAKLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   +         E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVSGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 454

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 80/468 (17%), Positives = 163/468 (34%), Gaps = 34/468 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  K   E I+       Q+ + +I  V+ DSRHIQ G +F+   G   DGH +  QA+
Sbjct: 3   NITLKQLAEWID--CDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A      +  +D + T  +N P++ V+NT   L   A          ++AVTG++
Sbjct: 61  NDGAGA-----TFFQRDSTLTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT        +           H
Sbjct: 116 GKTTTKDMLENVLSGKFRVQKTQGN----YNNEIGMPLTILELNEDTEVSILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S+           +      TN+G  H+    +++    AK  +   L  +    
Sbjct: 172 EIELLSNIA---------QPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    + ++K           V       +  +   + + ++        D  +  
Sbjct: 223 Y-----DGDEPLLKPHVETLTSAHQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYTI 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + GE  + NA +A  +   +G+    + + L  L +   R +     +    I   Y  
Sbjct: 278 SILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPNGAMVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  + +   G  I+V G     G++ +     +G    +     + T     
Sbjct: 338 SPTSMKAAIDTL-SHMKGETILVLGDVLELGEQSRQLHESVGSYLENKGIHQLYT----F 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            E    I  +    +   I    + + +R    ++ +  V++V A +G
Sbjct: 393 GEGAMAIHEKGKAYVNEAIHFDQKDKLMRYLTSIVEQHSVVLVKASRG 440


>gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA19]
 gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 452

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS      
Sbjct: 15  LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 74

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A        L VD+T   L   A          +  +TG+ GK++V   +  + +R 
Sbjct: 75  LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 126

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                        ++           P+ L              + +  +  G       
Sbjct: 127 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K  A    N  R H+                    L  +  A+I  +DA       + 
Sbjct: 177 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVF--KT 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G     +  + +       +  +    +    + P+PG   V+NA  AA 
Sbjct: 235 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A G+    V E L+    + GR            I   Y    +S++  +  +  + 
Sbjct: 295 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMP 354

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
           + R I V G  G+  + +   M       A     + A    DN
Sbjct: 355 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 457

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 163/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S          + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSI--------SVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 454

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 80/467 (17%), Positives = 154/467 (32%), Gaps = 35/467 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  K   E I        Q+ + KI+ VS DSR+I    +FV   G   DGH F+ QA+
Sbjct: 3   DVTLKQIKEWIP--CEIDDQYLQHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A    +               PI+ VD+T   L   A          ++AVTG++
Sbjct: 61  EDGAGAAFYQNDAKPDHEIEG-----PIIWVDDTLLALQELAKAYLKHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ + + +       G      +      LT        +           H
Sbjct: 116 GKTTTKDMIESVLKPAFKVKKTQGN----YNNEIGMPLTILQLDEDTEISILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S                   TN+G  H+    +++    AK  +   L P     
Sbjct: 172 EIELLSEIA---------HPDIAVITNIGESHMQDLGSREGIARAKFEIVSGLKPGGVFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    + ++K   +      ++       +        +           +  +  
Sbjct: 223 Y-----DGDEPLLKPHVDTLKDTEAISIGLAQDNSVVCSVEQHDAMGIAFTLNTNEHYQI 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+    + E++ K+ +   R E   T+S    I   Y  
Sbjct: 278 PILGTHNMRNAAIAISIGKILGLSYEEIQENISKVKLTGMRMELHRTDSNISVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S++  +  +  +  GR I++       G+        +G    D     ++T     
Sbjct: 338 SPTSMKAAIDTLAAM-DGRKILILADVLELGENSAEMHASVGDYLQDKGINLLLT----F 392

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++   I       +       ++ E I    +    +D +++  KG
Sbjct: 393 GDEAVHIYENGKANVDEAHHFNHKNELIEFITQHAQAEDEILI--KG 437


>gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
 gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
          Length = 455

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 171/466 (36%), Gaps = 38/466 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L+   F E++  +           K N VS+D+R I    IFVA+ G+  + + +I +A
Sbjct: 2   ELLK--FEEIVEAIHGKIHINSNCHKYNSVSTDTRKINENSIFVALKGDNFNANNYIVEA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA   +V     ++     ++ NT +++V+NTRK L   A     K    I+ +TG+
Sbjct: 60  SKKGANLCIVD---EIKFNEGDLQENTSVILVENTRKALLDLAELYRSKLNIKIIGITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S                   G  +                I L   +  L +    
Sbjct: 117 TGKTSTKDLTAAALGSKFKVFKTQGNFNNE--------------IGLPLMIFNLDNTLDV 162

Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V     S   + HRL  + +      TN+G  HI+  +T++    AKM + +       
Sbjct: 163 AVLEMGMSDFSEIHRLAKVARPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSI 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   +D     +   + N    +     +G       +    N  + T+    ++  F
Sbjct: 223 LIVNNEND----LLKDISSNDYNIINIGFNEGVAYKATDILTDENHIEFTVCHNDENEKF 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  + N+L+A      + I+   + + ++ L V   R + V            Y
Sbjct: 279 NIPVPGKHNILNSLLAIAAGRVLNIEYDKLKDGIKNLSVTSMRLDIVKGEKFTIVDDC-Y 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD----IAIVTDD 418
             + +S+   +  + TI   R I V G   +          K   + AD      ++T  
Sbjct: 338 NASPDSMRAAIDVMNTIKGKRKIAVLGTMKELGVDS-YKFHKEVAEYADSKNVDLLITV- 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  E  +         F    +  E I      +NK D+++V
Sbjct: 396 ---GEFNEAYKEGFNKTSKQFETIEDAAEFIT---NNINKDDIVLV 435


>gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
 gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
          Length = 463

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 26/404 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS      
Sbjct: 26  LPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAA 85

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
              A        L VD+T   L   A          +  +TG+ GK++V   +  + +R 
Sbjct: 86  LGGA--------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRR 137

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                        ++           P+ L              + +  +  G       
Sbjct: 138 FGDDAVSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQ 187

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K  A    N  R H+                    L  +  A+I  +DA       + 
Sbjct: 188 IAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVF--KT 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G     +  + +       +  +    +    + P+PG   V+NA  AA 
Sbjct: 246 ATFNLNTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAA 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A G+    V E L+    + GR            I   Y    +S++  +  +  + 
Sbjct: 306 LALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMP 365

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
           + R I V G  G+  + +   M       A     + A    DN
Sbjct: 366 APR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 408


>gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
 gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
          Length = 468

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 135/411 (32%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                       + VS+DSR +  G +FVA+ G + D H F+    A+GA A +VS   +
Sbjct: 15  GAIVTGDGNVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADVAARGANAALVSREGA 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                    ++ P L V +TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 75  --------PASLPQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +     ++      ++           P+ L +  +      +  + +  +  G  Q  
Sbjct: 127 AAVGIDARLSTAGNFNNDI-------GLPLTLLRLSAAHR---LAVIELGMNHPGETQTL 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                       N  R+H ++  T +A   A                ++  D     + +
Sbjct: 177 AKIAAPTVALVNNAQREHQEFMATVEAV--ALEHASVIHALAPDGVAVFPADDKYAGIWR 234

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A      +              V    +   + I       +      G     NAL A
Sbjct: 235 VAATGNAILDFALNDADRSTAAAVTGTMSGGVLAIETPAGRAEVRLQALGAHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILK 374
           A   +A G+    +   LE    V GR +          G  +  D Y    +S+   + 
Sbjct: 295 AAAALASGVALEAIRTGLEAFEPVKGRLQVKRAAVGSLAGAMLIDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            +    S R++V+   G  GD        +G  A     D    T D  R 
Sbjct: 355 VLAQQASPRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALYATGDATRD 405


>gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 458

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 144/476 (30%), Gaps = 44/476 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E I+    +            S DSR I+ G +F A+ G + DGH ++
Sbjct: 1   MKLA---LWRIAEFIHGTGDYRAGAEAL---GYSIDSRTIKPGELFFAVKGERLDGHDYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ +GA A VVS       F A       +LV D+    L   A  +       ++ V
Sbjct: 55  QAALDRGAVAAVVSRE-----FPARFNGTRNLLVADDPLLALHRLAEMVRSLWHHPVVGV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +           G  +             P               
Sbjct: 110 TGSAGKTTTKECIAHVLASKLKVLKSEGNLNNHFGLPLQLLKVEPE-------------H 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S  G         +   G  TN+   H++   +      AK  L   L   
Sbjct: 157 EIAVIEMGMSHAGEIAALAKLAQPNTGVVTNVAPVHLENFDSIAGIARAKYELIAALPRG 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +    D        R  +    +  V     F             +  +    K +
Sbjct: 217 GCAVL--NADDEFVSQFGRDFHGTVLMFGVKRAADFRAENVEMLGAAGSKFDLRFREKGY 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL GE  VYNAL A  + +  GI     +  L+ L     R E V           
Sbjct: 275 PAEMPLIGEHNVYNALAAVAVGVHHGIAIESAIASLKTLKPADKRGEVVEIAGATVVNDC 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     +L  ++  +  + + R IV+ G     G   +      GK    + D  +   
Sbjct: 335 -YNSNPKALNAMVDALAKMPAQRRIVIAGEMLELGPEGEHLHRDSGKHMKGIVDHLV--- 390

Query: 418 DNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                     +   ++ G               EA       +   D +++ A +G
Sbjct: 391 ------GVRGLAQAMVEGAKSAGVEAEFVATPEEAGDWLAANIRPGDAVLLKASRG 440


>gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)]
 gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces lividans TK24]
 gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
 gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           coelicolor A3(2)]
 gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
          Length = 471

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 158/471 (33%), Gaps = 39/471 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR    G +FVA VG + DGH F  +
Sbjct: 1   MITLSLAEIAEVVGGRMHDIPDASAEVTGPVVRDSREAGPGSLFVAFVGERADGHDFAAR 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A++ S                P +VVD+ +  L   A  +  +    ++A+TG
Sbjct: 61  VVEAGAVAVLGSRPV-----------GVPAIVVDDVQAALGALARHVVRRLGTTLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R   + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLRRKAPTVFTPGSMNNEVGLPLTALTATDETKFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240
             + + A   G  ++  +      G+  N+G  HI     ++    A  ++        +
Sbjct: 158 -VLEMGARGIGHIRYLTELTPPKIGAVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+ ADD   + +  R           G         ++     +   ++       
Sbjct: 217 GGAAILNADDPLVRAMASRTKAKVILFGESGEADVRAENVRLTDTG-QPSFSLHTPSGAS 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +   +G+ +  +   L +       R E          + 
Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGMSADEIATALSEAGSLSRWRMEVTERPDGVTVVN 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL--ADIA 413
             Y     S +  L+ +  +  GR    V G     GD    +   +G++A+ L  + + 
Sbjct: 336 DAYNANPESTKAALRALVAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLV 395

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            V     R                  +   +   A+      L   DV++V
Sbjct: 396 AVGGREARWLQLGAYNE--GSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 444


>gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
 gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
          Length = 466

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 154/445 (34%), Gaps = 33/445 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I+ V  DSR I  G +FV + G   DGH +I +AI  GA A + S+            
Sbjct: 25  TEIDSVEFDSRLITPGALFVPLKGA-TDGHSYIDKAIENGAVAALWSND------PNEAP 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              PI+ V++T   +  FA    G     ++ +TG+SGK++           +       
Sbjct: 78  VGFPIIQVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGKTTTKDMTAAALSTALKVHKTN 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +          L  P    +              + +  S  G         +    
Sbjct: 138 GNYNND-IGLPKTILDMPEDTEV------------IVLEMGMSGAGEISFLSKLAEPDVV 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +G +HI++  +++    AK+ + + L  + +             V +   +     
Sbjct: 185 VITMIGENHIEFLGSRENIAKAKLEILDGLKEEGTFIYPG---DEPLIVDQMPTDLKQST 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L++G             +   Q    +    +     PL G + V NAL A G+  + G+
Sbjct: 242 LTIGLNDDHDIFAFDVMMDQFQSTFYTNLSPELKMEIPLSGGYNVQNALYALGVAYSFGL 301

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRI 384
               V  +L +  + P R  +         +   Y  + ++++ +++N   I      + 
Sbjct: 302 SMEQVRPNLAEFSITPDRGSWERGILDTQILNDTYNASPSAMKAVIRNFSAIASKGMSQK 361

Query: 385 IVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           I+V G   +     D+  R I   I L+      +    PR +       E         
Sbjct: 362 ILVLGDMLELGAFSDELHREIATVIGLNTFKHVFL--YGPRIQPLVDALIEKGMHPDLIT 419

Query: 441 EKGNRIEA-IRTAIEMLNKQDVLVV 464
              +  EA I     +L  +D ++V
Sbjct: 420 YIESDKEALIEQVKAILQPEDKVLV 444


>gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 158/418 (37%), Gaps = 24/418 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D   ++       +  +E     + +D+R    G +F+A+ G   D H F+ +A+ QGA 
Sbjct: 5   DLQTIVKVTGAKILSQKETNFAGIGTDTRAQLQGQLFIALKGEAFDAHNFLDKAVEQGAS 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V    +L +    ++    IL+V +T K L    +    +    I+ +TG++GK++ 
Sbjct: 65  GLLVHEENALIE---KLKDKATILLVPDTLKALQKLGNWARHESSARIVGITGSNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F   +   S    +  G  +             P             ++ V  + +  
Sbjct: 122 KEFTAALVGSSMDVHYNKGSFNNHWGVPFTLLQLPP-------------NKDVAIIEMGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YA 248
           +  G     +   +      T +GR H+++  T +    AK  ++E    +         
Sbjct: 169 NHAGEITELVHIAEPDVVVCTMVGRAHMEFFGTIEKVAEAKEEIYEAAGDQTVRIYNLDN 228

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPL 306
              ++  V  R      R+L+   +     +  + +  N  +++I  S+ G+       +
Sbjct: 229 TQTHNMYVKARDKFPKARILTFSSEDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQV 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + N + AA + +A+G+  A V   L       GR + V   S    I+  Y    
Sbjct: 289 FGAQNLTNLMAAASVGLAVGMTPAQVWAGLPACKTNWGRNQLVHLKSGAQMIFDAYNANP 348

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDN 419
           +S++ ++ N++ +T  GR + VFG     G         +G  +     D      D+
Sbjct: 349 DSMKALIDNMKLLTVPGRKVGVFGQMRELGSASANLHEELGTWVGQAGFDKVYFIGDD 406


>gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
 gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
          Length = 476

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 165/446 (36%), Gaps = 39/446 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S       P+
Sbjct: 39  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 92

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A+         ++A+TG++GK++    +     + G   +     + 
Sbjct: 93  VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 152

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +          T                    + +  +S G         +      TN+
Sbjct: 153 LIGMPLYAANLTEDA-------------EFVVLEMGMNSPGEVDALSRIARPDVAVITNV 199

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   R++S G 
Sbjct: 200 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFG- 257

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    ++          VT    G++  +          Y+  + A +  A  ID    
Sbjct: 258 VGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAAVGHAFSIDLTQA 317

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTITSG---RIIV 386
              +E+   + GR +   T  +G  I      Y     S+   ++N+  +      R + 
Sbjct: 318 RGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVA 377

Query: 387 VFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           + G   +   G     R ++ +I     D+   T  +      + +   +  G       
Sbjct: 378 ILGDMLELGSGSCHYHRGLLERIMHSNIDVVY-TVGSHMLALYDVLPQHLRGG-----HF 431

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +  EA+     ++   D ++V  KG
Sbjct: 432 ADHGEALAHLERIIKPGDGVLV--KG 455


>gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652]
 gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CIAT 652]
          Length = 470

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 155/451 (34%), Gaps = 42/451 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I +G  F AI G++ DGH +   A+A GA  +VVS A       A  R  
Sbjct: 17  ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++    L         +    I+AVTG+ GK++    ++ +   SG     +  
Sbjct: 73  VPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 132

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+              V  +  G  +  +  I+      
Sbjct: 133 FNNHWGV----------PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVTMIRPDVAVI 179

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   ++ +    AK  +FE L       +   +D ++             + S
Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   K    L +         + +++ G+  +     PG     NAL A G+   +G D
Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD--YAHTSNSLEMILKNIRTITS-- 381
               +  L  L    GR +    +     G    +D  Y     S+   +  +       
Sbjct: 300 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359

Query: 382 -GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            GR I V G   +     ++    + G +     +   +   +          A +   +
Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGAD---------MAALKESL 410

Query: 437 PGFIEKGNRI---EAIRTAIEMLNKQDVLVV 464
           P  +    R    E     +  +   DVL+V
Sbjct: 411 PESVHVEYREKTSELTDYVLNAVAPGDVLMV 441


>gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 470

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 148/378 (39%), Gaps = 26/378 (6%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++VDNT   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKDVPNP------PTDFPVILVDNTLLSLQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPY-TILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    ++    + +   
Sbjct: 235 Y-----PHEETLLLSNINGDFRQLTFGKSEAAEIYPLEIHAEAEGTSFVTNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  V+N + A      IGI+   +   L+K+     R E++ T S    +   Y  
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKKMERSKSRLEWITTKSGARILNDAYNS 349

Query: 365 TSNSLEMILKNIRTITSG 382
           +  +L+ +LK    + S 
Sbjct: 350 SPTALKTVLKTFMHMDSK 367


>gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 448

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 159/440 (36%), Gaps = 47/440 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   L+     + +   ++  S +S++I    +F+ + G + DGH F
Sbjct: 1   MNL------WLSEIAKALNGELKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
           + +A+  GA + +                  P + V +T   L   AS +  K     ++
Sbjct: 55  VEEALQNGAISFISHKEIE--------NVRVPYVKVKDTLAALQGLASYVRDKLKGLTVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +      +    G          +N +  P  I     L+   
Sbjct: 107 GVTGSVGKTSTKEYIFNVLSCKYKTFKNQGNL--------NNHIGLPFSI-----LNMPE 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  S+ G         K   G  TN+G  HI+  +++   F AK  + + + 
Sbjct: 154 DTQVAVFEMGMSNFGEISKLSQIAKPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMP 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   +D  +    +         +      +  ++++        Q   S E  
Sbjct: 214 ESGILIINNDNDILNLHKKELKRKVVTIGIENESNFRAQNVQR-------HQNGFSFEVG 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + +         +YN+L A  +   +GID  LV E + +   +  RFE +   S    +
Sbjct: 267 GYTYFIKSFNFHDIYNSLFAIAIGTILGIDRQLVKEAIRQKERLKRRFEVIKKGSI-TIV 325

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
              Y  +++S+   + +I     G+ I+V G     G+  + +   +G+ I     D+ I
Sbjct: 326 DDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384

Query: 415 VTDDNPRSEDPEKIRAEIIH 434
            T      +D   I  E   
Sbjct: 385 CT-----GKDAFYIFDEAKK 399


>gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 457

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 144/375 (38%), Gaps = 26/375 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                  + P+++V++T   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    N   R L+ G                +    I+    + +   P
Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTIT 380
             +L+ +LK    + 
Sbjct: 338 PTALKTVLKTFMHMN 352


>gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 443

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 144/409 (35%), Gaps = 40/409 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             ++   LS       + K+  V+ +SR ++ G +FVA+V +  DGH ++  A+ +GA A
Sbjct: 5   IKKIGAVLSAVTQGNDQIKVTGVAFNSRDVKIGDLFVALVADS-DGHRYLQDALDRGAAA 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V   ++       I    P ++V +T   L   AS    +    ++A+TG++GK++  
Sbjct: 64  VLVDDNHA-------ISEKLPAIIVKDTLTALQQLASYYRQQINPKVIAITGSNGKTTTK 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                I       +F+               L+ P    +              V +   
Sbjct: 117 DMTAAIVSTV-FKTFKTPNNFNNEIGVPMTLLSMPEDTEVL------------VVELGMD 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G        ++      T +G  HI++ +T+     AK+      +     A      
Sbjct: 164 RSGQLTMLSQLVQPDIAIITMIGEAHIEFFKTRANIAKAKLE-----ITNGLKADGVLFI 218

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            + + ++ +A      V                          +   K+  F  PL G +
Sbjct: 219 PFDEPLLTQAVIMQRVVWFGQNIDAVETASDHT----------NFIYKNTRFAIPLIGGY 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NAL A    I + ID    ++ L+   +   R E + T      I   Y     ++ 
Sbjct: 269 NIMNALAAISAGILLHIDLKKAVQALQTFDLTKNRTERLVTARGVILISDVYNSNPTAVA 328

Query: 371 MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIV 415
            +L  ++ I +    VV G     G++       +G K+     D   +
Sbjct: 329 AVLATLKAIPAQHKYVVLGDMLELGEQANELHAGLGQKVLDANVDGVYL 377


>gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC
           13032]
 gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC
           13032]
          Length = 514

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 84/490 (17%), Positives = 161/490 (32%), Gaps = 47/490 (9%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +   +      +  ++  V  DSR +  G +F+A+ G + DGH F   
Sbjct: 1   MITMTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAAT 60

Query: 63  AIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNT-------RKFLSLFASRLYGK 112
           AI +GA A++ +    +         I+ +   +   +         + LS  A  +   
Sbjct: 61  AIEKGAVAVLAAREVDVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSRLARHVVDI 120

Query: 113 ----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               H  N++A+TG++GK+S   F+  +  + G +    G  +            T    
Sbjct: 121 CVAGHQLNVVAITGSAGKTSTKDFIATVLDQDGPTVAPPGSFNNELGLPHTALRCTTD-- 178

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             + A   G  +H  +       +  N+G  H+    +++    
Sbjct: 179 -----------TKYLVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQ 227

Query: 229 AKMRLFE--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           AK  + E          A++ ADD +   +  R         +   Q K           
Sbjct: 228 AKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYWATSISL 287

Query: 287 N---KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VV 342
           +   +   T++ +   +     + GE QV NAL AA + +  G+   LV+  LE      
Sbjct: 288 DAVARASFTLNTKDGSWPVTLQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAAS 347

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR----IIVVFGCG---GDRD 395
             R +          I   Y    +S+   +  +    SGR       V G     GD  
Sbjct: 348 AHRMDVKTRADGVTIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDA 407

Query: 396 QGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +G           +   +NP   +   +               +   A+     
Sbjct: 408 SEAHAELGAELAKYNVQELVAVGENP---NCAALAESAASLGVSTHVVSDVDAALELLAG 464

Query: 455 MLNKQDVLVV 464
            + + DV++V
Sbjct: 465 HIKRDDVVLV 474


>gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
 gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
          Length = 505

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 90/444 (20%), Positives = 154/444 (34%), Gaps = 28/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR ++ G  F AI G++ DGH F+  A   GA   VVS         A  R  
Sbjct: 28  ITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRAGAALHVVSEK----RLPALGRMQ 83

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+    L   A     +    I+AVTG+ GK++    ++Q     G     +  
Sbjct: 84  APMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTKEALRQGLSACGSVHASVAS 143

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  +  G  +  +  ++  A   
Sbjct: 144 FNNHWGV----------PLSLARLPADSR---FAIFEIGMNHPGEIRPLVKLVRPHAAIV 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ + +      +AK  +FE  +     AII ADDA    +   A  AG   + 
Sbjct: 191 TLIAAAHLGHFRDLDEIADAKAEIFEG-IVPGGSAIINADDAKCMRLAAAAKAAGVTNVL 249

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              + +    +      + +   +  +   ++      +PG     N L   G     G 
Sbjct: 250 TFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAAHVAGA 309

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSNSLEMILKNI---RTIT 380
           D A V E L +   + GR E       G          Y     S+   ++ +   +   
Sbjct: 310 DIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLANAKLSE 369

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           +GR I V G   +       +  ++A  L D  I        E+ + +   +        
Sbjct: 370 NGRRIAVLGDMKELGGHSPTLHAELAEPLKDAGIARV-LLVGEEIKPLAEALGDEEIECT 428

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
                 EA       +   D ++V
Sbjct: 429 THKTPTEAEEQLFSDMRAGDAIMV 452


>gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
 gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
          Length = 453

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/469 (14%), Positives = 152/469 (32%), Gaps = 38/469 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK    + KD  +++N   +      + +I  ++ DSR ++ G +F+  +G   DGH +I
Sbjct: 1   MK---YLVKDLEKILNAKKVNIT--SDTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA A +               S+  I+ V+++ + +   A           +A+
Sbjct: 56  ESAFEKGAAASLS--------LKDDFVSSNNIIYVNDSYEAIQTLAKHYLDSLNAKTIAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +           G          +N L  P  I  A   S +   
Sbjct: 108 TGSNGKTTTKDIITSVLSTKYKVHKTQGN--------FNNELGVPLTILAAPEDSEIL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A   G        ++      TN+G  HI++ ++++    AK  +   +   
Sbjct: 158 ---VLEMGADGFGQLDFLSKLVEPNYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D    + +  + +              I L+      ++    +++  + +
Sbjct: 215 GYFVY--NGDEVLLKSLVDSSDFNTTSCGENNYNDII-LENYTITRDRIDFKLNISDEQY 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                            A    I    +  +       + +   R + +        I  
Sbjct: 272 FTKLKGKHNLFNIMFATAIASKIG-LTNEEIRKAIENTVEITGMRLQSIPYKEDSLIIND 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGK-IALDLADIAIV 415
            Y  +  S++  +  + +        +        G  +      +G+ I+    DI +V
Sbjct: 331 AYNASPTSMKAGVDVVSSFDDFDFKTLVLGSMFELGPNEVNYHAEVGEYISNKTNDINLV 390

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E  E I  +I +     +      E         +K +V+++
Sbjct: 391 IS---VGELAENITKQIKNDKIKTLHFPTTAEVSEYLKNNKHKNEVILL 436


>gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes 220]
          Length = 457

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 144/374 (38%), Gaps = 26/374 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                  + P+++V++T   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKDVPNP------PKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    N   R L+ G                +    I+    + +   P
Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTI 379
             +L+ +LK    +
Sbjct: 338 PTALKTVLKTFMHM 351


>gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
 gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
          Length = 464

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 22/386 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL +  S   +  ++  + +VS+D+R      +F A+ G   D H ++ QA+ 
Sbjct: 1   MIKLSTKELADIFSARLIGAKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV     +         + P L+V +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCSAVVVERECDV---------DVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q+       +  T        +       P+ L +  S         +
Sbjct: 112 KTTVKEMTASILQKVAQDPDAVLFT------QGNFNNDIGVPLTLLRLESKHK---FAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +D ++       N+   H++   + +    AK  +++ L       +
Sbjct: 163 ELGANHQGEIAYTVDLVQPDVALVNNVAAAHLEGFGSVEGVAQAKGEIYQGLSENGIAIM 222

Query: 246 IYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDF 302
            Y      +     ++  NA  R+ SV  +    + +++       Q T+      +   
Sbjct: 223 EYEHSVRYQKKYWYEQIGNADTRLFSVMGKVSDYYAQEIKLTETGSQFTLCCIREGEIKI 282

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G   V NA+ AA L + +G+    +   LEK   V GR   +        +   Y
Sbjct: 283 NLPYLGLHNVSNAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPNLLLLDDTY 342

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVV 387
               +SL+  +  +R      RI  V
Sbjct: 343 NANVSSLKSAIDVLRQYDKFFRIFAV 368


>gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
 gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
          Length = 452

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 153/434 (35%), Gaps = 39/434 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L      +LI Q         +  I +VS+D+R I+ G +FVA+VG + D H F 
Sbjct: 4   MMLSQLAEYLDGQLIGQ---------DVAIEQVSTDTRTIEPGSLFVALVGERFDAHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A++VS A            +TP L+VD+T+  L      ++       +A+
Sbjct: 55  SNAVEAGASALLVSKALDC---------STPQLLVDDTKLALGKIGQFVHQLCQTPTVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   V  I    G   F  G  +           +TP               
Sbjct: 106 TGSCGKTTVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPE-------------D 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +    ++       N+   H++   +      A      + L  
Sbjct: 153 DFAVIELGANHIGEIAYTTQLVQPDIAMVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLKP 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKD 299
            S AI+  D    +   +   +      SV         + +      +    +      
Sbjct: 212 GSVAIVNLDSHGGEYWQQVLADKRVVHFSVSDDSADFFARNITMSTAGEASFELVSRQGT 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F     + G+  V NAL A+ L   +G    +V   L+ L  V GR E V    +   I 
Sbjct: 272 FSVELGIIGQHNVANALAASALAFELGATIEMVQSGLKHLAKVKGRVESVSLTDKITLID 331

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             Y  +  +++     + +    R +++      GD        +G+ A       ++T 
Sbjct: 332 DSYNASVPAMKAAADLLSSFGGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLT- 390

Query: 418 DNPRSEDPEKIRAE 431
                 D + I  +
Sbjct: 391 ---FGADAKAISEQ 401


>gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
 gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
          Length = 457

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 146/415 (35%), Gaps = 26/415 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  +     ++   I   +     IN VS+D+R ++ G +FVA+VG + D H F  QA+
Sbjct: 3   DVSLEQICSAMSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A A++V     L         N   +VV++T+  L   ++ ++ +     +A+TG+ 
Sbjct: 63  EANASALLVERKLDL---------NITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSC 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   V  I Q+ G   F  G  +               P+ L       ++     
Sbjct: 114 GKTTVKEMVASILQQRGKVLFTAGNFN----------NDIGVPLTLL---RSEANDDYAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +    +K       N+   H++   +      A      + L     A
Sbjct: 161 IELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSINGVKQA-KGEIFQGLAAGDTA 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303
           I+  +            +      S          K +      +    +          
Sbjct: 220 IVNLESNGGDFWNDVLADKSVLTFSESDSKADYFAKNIRINEQGEACFDMQTPQGSIFVE 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G+  V NAL AA L I  G     V   L  L  V GR E    +     I   Y 
Sbjct: 280 LGIIGQHNVANALAAAALSIQFGASLDEVKNGLANLISVKGRVEVQQLSQNIKLIDDSYN 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +++   K + +    R +++      GD        +G+ A   A   ++T
Sbjct: 340 ASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT 394


>gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium cellulovorans 743B]
          Length = 395

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 163/416 (39%), Gaps = 34/416 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++++      LI       +   +   N VS D+R ++ G I++AI G   DG+ F+ +
Sbjct: 6   LEEVLKATEGNLI-------INGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVE 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI +GAE  ++      +   A + + + I++V+NT+K L   A     K    ++ VTG
Sbjct: 59  AINKGAELCIIDKIAYTE---AEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    +              G          +N +  P         +  ++  V
Sbjct: 116 STGKTSTKDLIAAALSEKLKVFKTKGN--------FNNEIGLP-----LMIFNLDNTYDV 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S     Q   D  +   G  TN+G  HI+  +T++    AKM +      +  
Sbjct: 163 AVLEMGMSDLFEIQRLSDVARPDLGVITNIGISHIENLKTRENILKAKMEITTYFGKENL 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + +  D      + +A     +      +   +  + +    +  +  ++    +  F
Sbjct: 223 LIVNH--DDQYLSTIDKAEYRLIKASISDDKNIDLKGESLVLKEDSCEFKLN----ESKF 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  + NAL+A      +G++  L+ +    +     R +          I   Y
Sbjct: 277 YIPMPGKHNISNALLAIACARELGVEDQLINKGFLNIEATSMRLDIEKNKGI-TIINDTY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414
             + +S++  ++ ++ +   R I V G     G+        MG  A + + DI I
Sbjct: 336 NASPDSMKAAIEVMKNLKGKRRIAVVGTMKELGENSFEYHKEMGIFAKENSVDILI 391


>gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
          Length = 480

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 144/414 (34%), Gaps = 23/414 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L+   +      +  VS+DSR +    +F A+ G K D H ++  A+ 
Sbjct: 1   MISLQTKKLAEILNGRLIGDETVTVETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV  A  +         N P +VV +TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGNTAVVVEHACEV---------NVPQIVVADTRLALGHLAQWLKSELNPLTVAITGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL----------- 174
           K++V      I Q++   S         +           + ++                
Sbjct: 112 KTTVKEMTASILQQTARKSAVKNTEVFFTGSNHGKANFADAVLFTQGNFNNDIGVPLTLL 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + + A+  G   +    ++       N+   H++   +      AK  ++
Sbjct: 172 RLQPEHRFAVIELGANHAGEIDYTTKLVRPDVALINNVAAAHLEGFGSLDGVARAKGEIY 231

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L ++  A++ +D  Y     K       +  S          + +    +    T+ 
Sbjct: 232 RG-LSEDGIAVVNSDCHYLSLWDKEIAGHRMQSFSATNPEADYWAENIRMTESGSAFTLH 290

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D   P  G   + NAL A  L + +G +   V   LE+   V GR   +   + 
Sbjct: 291 SPDGSIDISLPYLGAHNIDNALAATALAMNVGAELCDVKAGLEQRSPVKGRLFPIEPCNN 350

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
              +   Y    +SL+  +  ++   + RI+ V      G+  +     +   A
Sbjct: 351 LLLLDDTYNANVDSLKSAIGVLKNYEAFRILAVGDMAELGENSRECHRQVANYA 404


>gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
 gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
          Length = 452

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 90/433 (20%), Positives = 158/433 (36%), Gaps = 37/433 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  +      EL+           +R I  VS+D+R I AG +FVA+VG + D H F 
Sbjct: 4   MMLSQIADALDAELVGN---------DRAIESVSTDTRAIDAGALFVALVGERFDAHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  GA A++VS             S+ P L+V +T+  L    + ++       +A+
Sbjct: 55  AQAVESGAGALLVSRIVE---------SDVPQLLVKDTKLALGQLGALVHQSCQTPTVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   V  I ++ G   F  G  +           +TP               
Sbjct: 106 TGSAGKTTVKEMVASIMEQKGRVLFTAGNFNNDIGVPLTLLRSTPE-------------D 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +  + +K       N+   H++   +      AK  +++ L P 
Sbjct: 153 DYAVIEMGANHIGEIAYTTNLVKADVALVNNVAAAHLEGFGSLDGVKQAKGEIYQGLKPG 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I    +         A     R   +     F           + + T+     D 
Sbjct: 213 SVAIINLDSNGGEYWHSVLADKLVKRFSVMDSDADFFAKDISLNSSGEAEFTLVSPVGDV 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G+  V NAL A  L + +G +  +V   L +L  V GR E +  N     I  
Sbjct: 273 AIKLGIVGQHNVANALAATALALELGANLEMVQSGLAQLSKVKGRVEVIELNDTIKLIDD 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            Y  +  +++     + + T  R +++      GD        +G+ A       ++T  
Sbjct: 333 SYNASVPAMKAAADLLASFTGIRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLT-- 390

Query: 419 NPRSEDPEKIRAE 431
                D + I  E
Sbjct: 391 --YGADAKAISDE 401


>gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O46]
          Length = 452

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNGTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437


>gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. SR1/5]
          Length = 462

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 170/481 (35%), Gaps = 54/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++  ++ N +   P +  + ++  +++DSR ++ G +FV +VG + D H FI
Sbjct: 1   MK--NLTLENITKVCNGIYHGPQEKLQEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ +  GA A +        D         P + V ++ + +   A     +    ++ +
Sbjct: 59  PQVMEAGALATLSERTLEGADH--------PYIQVGSSLQAVKDIAEFYLEQLDIPVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + +    +    G  +               P+ + +        
Sbjct: 111 TGSVGKTSTKEVIASVLKEKYRTLKTQGNFN----------NELGLPLTVFRLRDE---D 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +  + +  S  G +  RL  I K      TN+G  H++    +     AK  +F+ +  
Sbjct: 158 EIAVLEMGISDFG-EMTRLAKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQYVKR 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I+   D      +K  ++        G                     I ++GK 
Sbjct: 217 N----IVLNGDDDKLSTVKEYNSMQPVFFGNGENASVTCENVESRGLKGMSCDICLKGKM 272

Query: 300 --------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                   F    P+PG   V NAL AA +    G+++  +   +E L  V GRF  + T
Sbjct: 273 AENGEFQTFHVDIPMPGRHMVSNALAAAAVGRLYGLNAEQIKNGIESLEPVSGRFNMIET 332

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALD 408
           +         Y     S++  L  ++    GR + + G  G+    +      +G  A  
Sbjct: 333 DKFMIVDDC-YNANPMSMKASLDVLQD-GLGRKVAILGDMGELGTDEAALHEGVGVHAGQ 390

Query: 409 -LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLV 463
              D  I             I  +     P       R + + + ++ L       D ++
Sbjct: 391 CRIDACICV-----GPLAAHIAEKASQTNPDLTVI--REKDLESLLKNLNTYVKPGDTIL 443

Query: 464 V 464
           V
Sbjct: 444 V 444


>gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 452

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437


>gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces albus J1074]
 gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
 gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
          Length = 474

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 167/481 (34%), Gaps = 57/481 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +   P    +    +   V  DSR    G +F A  G + DGH +   
Sbjct: 1   MIALSLAEISSIVGGQPADIPDLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAAT 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++ +                P LVVD+  + L   A  +  +    ++A+TG
Sbjct: 61  AVETGAVAVLATRPV-----------GVPALVVDDVERALGALARAVVERLGTTVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V Q+  R   + +  G          +N +  P         +  +    
Sbjct: 110 SAGKTSTKDLVAQLLTRVAPTVWTPGSL--------NNEIGLP-------LTALRAEADT 154

Query: 183 THVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            H+ +E  + G+   R          G   N+G  HI     ++    AK  L E  LP+
Sbjct: 155 RHLVLEMGARGIGHIRYLTGLTPPRIGVVLNVGSAHIGEFGGREQIAQAKGELVEA-LPE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+ ADD Y +++  R                     ++     +   T+       
Sbjct: 214 DGVAILNADDRYVRDMASRTKARVVTFGEAPEADIRAENVRLTENG-RPAFTLHTPSGCG 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +   +G+    + + L +       R E          + 
Sbjct: 273 DVTMRLYGEHHVSNALAAAAVASELGMPVDEIAQALSEAESLSRWRMEVTERPDGVTIVN 332

Query: 360 VDYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409
             Y     S+   L+ +  +        GR   V G     GD    +   +G++A+ L 
Sbjct: 333 DAYNANPESMRAALRALVAMGGARRGEGGRTWAVLGQMAELGDEALTEHDAVGRLAVRLN 392

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLV 463
            + +  V        +   +  ++     G      +   +   A+      L   DV++
Sbjct: 393 VSKLVAV-----GGREAAWL--QMGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVL 445

Query: 464 V 464
           V
Sbjct: 446 V 446


>gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
 gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
          Length = 455

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 131/416 (31%), Gaps = 31/416 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L        +    I      +     VS DSR + AG +FVA+ G + DGH ++  
Sbjct: 2   LKPLSLSQLTTALKGQHI----GGDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLAD 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             A+GA A +V    +          + P L V + R  L    +       + ++A+TG
Sbjct: 58  VKAKGAVAALVEREVA--------DVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   +  I +  GL     G  +             P                 
Sbjct: 110 SSGKTTVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPE-------------HSA 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS  G +     G+        N                        E L +  
Sbjct: 157 AVIELGASRIG-EIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFD 301
            AI+  DD        RA        +        H   +          T+   G+   
Sbjct: 216 IAILNLDDKAFDIWKARAGAHKVVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVA 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GE  V NAL AA    A+G+  + +   L  +  V GR       +    I   
Sbjct: 276 VQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDS 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAI 414
           Y     S+   +  +    SGR ++V G  G+  Q        +G  A    D   
Sbjct: 336 YNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390


>gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 451

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 75/467 (16%), Positives = 164/467 (35%), Gaps = 35/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQKGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +             IS    +  +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTG------ISFTINNEHYDL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+   ++ ++L+ + +   R E     +    I   Y  
Sbjct: 277 PILGKHNMKNATIAIAVGHELGLTYNIIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S+   +  + T+ +GR I++ G     G+  +     +G    +     + T  N  
Sbjct: 337 SPTSMRAAIDTLSTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 393

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + + I       +       ++ + I      L   D ++V  KG
Sbjct: 394 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 436


>gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
          Length = 438

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 154/450 (34%), Gaps = 31/450 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
             + +  ++IN V+ DSR I    +F+   G   DGH F+ +A+  GA A        + 
Sbjct: 3   LKINFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQRGTPID 62

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           +  +      P++ V++T   L   A          ++AVTG++GK++    ++ +    
Sbjct: 63  ENVSG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTE 117

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  G          +N +  P  I     L   +   ++ + +  S     +   +
Sbjct: 118 FKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISILEMGMSGFHEIEFLSN 164

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +      TN+G  H+    +++    AK  +   L    +      +      V +  
Sbjct: 165 LAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVE 224

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +     +           +           +          +  P+ G+  + NA +A  
Sbjct: 225 NAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDLPILGKHNMKNATIAIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G+    + ++L+ + +   R E     +    I   Y  +  S+   +  + T+T
Sbjct: 280 VGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT 339

Query: 381 SGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             RI+++      G+  +     +G    +     + T  N    + + I       +  
Sbjct: 340 GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN----EAKYIYDSGQQHVEK 395

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ++ + I      L   D ++V  KG
Sbjct: 396 AQHFNSKDDMIEVLTSDLKAHDRILV--KG 423


>gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
 gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
          Length = 455

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 152/414 (36%), Gaps = 30/414 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L    +   +  I +VSSDSR +    +FVA+ G+  DGH F+  A  
Sbjct: 1   MIKLSLTEIAEHLGGKLLGD-DFSIEQVSSDSRAVDGKTLFVALKGDNFDGHNFVGSAAE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V            +      ++VDN+++ +    + +  K     +A+TG++G
Sbjct: 60  NGARAVLVERE---------LPDAVAQIIVDNSQRAMGDIGAYVREKLAPVCVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K+SV   V  I  +     +  G   + I       RL       + +  +  + +    
Sbjct: 111 KTSVKEMVATILSQQHQVLYTAGNFNNEIGVPLTLLRLQAGDQFGVFELGANHAGEIDYT 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            S+   S  +                N+   H++   +      A        +  +  A
Sbjct: 171 SSLVKPSVAM--------------VNNVASAHLEGFGSLAGVAKA-KSEIFNHVATDGIA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I ADDA++  ++  + +      ++                 +    IS   +    + 
Sbjct: 216 VINADDAFAAVMLAASQHLTQLTFAIDAAADVKATALHADKGGRYSFDISYADQVESVVL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G  QV NAL A+ +C+A+G+  + + + L  L  V GR            I   Y  
Sbjct: 276 PLAGRHQVLNALAASSICLALGMSLSFINQGLSLLEPVKGRMLPTRLGRV-TVIDDSYNA 334

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIV 415
              S+   +  ++ I+  R +V+   G  GD        +G  A     D    
Sbjct: 335 NPASVGAAIDWLQEISGNRCLVLGDLGELGDNAALLHNELGAEAKAKGVDALFC 388


>gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
          Length = 452

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 71/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      P++ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRILV--KG 437


>gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
 gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
          Length = 457

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENFLAIHREVGQYVN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   +        +E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVSGKHFTDKVEMVDFL--VPLIETQLQQNKKVVVLGKG 438


>gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 378

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 68/402 (16%), Positives = 134/402 (33%), Gaps = 28/402 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+    IN V+ DSR+I+   +F+   G   DGH F+ QA+
Sbjct: 1   MINVTLEQIKHWIPCEIDEQYLSHSINGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        L +         PI+ V++T K L   A          ++AVTG++
Sbjct: 61  KDGAGASFSEKGTELNEDIEG-----PIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G      +      LT        +           H
Sbjct: 116 GKTTTKDMIESVLTTEFKVKKTQGN----YNNEIGMPLTILDLDEDTEISILEMGMSGFH 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                SS           +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 172 EIELLSSIA---------EPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      + +        V          H+  +        +          F  
Sbjct: 223 YDGDEPLLKSHLEQLNKARLISVGLGNSNTLVCHVDDIETEGIAFTI-----NDKESFTL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G   + NA +A  +   +G+    + +++  + +   R E   T +    I   Y  
Sbjct: 278 PILGTHNMKNATIAIAIGHELGLSYETIKDNINHVKLTGMRMERHQTTNNVTVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG 403
           +  S++  +  + ++  GR I++       G+  Q     +G
Sbjct: 338 SPTSMKAAIDTLSSM-EGRKILILADVLELGENSQSMHEEVG 378


>gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
 gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
          Length = 463

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 145/387 (37%), Gaps = 24/387 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
             I  +     + + +++  +++D+R I+AG +F+AI G   DGH F+ QA+AQGA A++
Sbjct: 7   NWIASVLAVSFEGQNQQVLNINTDTRTIKAGEVFLAIKGPNFDGHKFVEQAVAQGAVAVI 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V  +  +Q          P  +V + R  L    + +  +     +A+TG+ GK++V   
Sbjct: 67  VDHSVKVQ---------VPQFIVPDARLALGKLGAAVMAEVNPKTIAITGSVGKTTVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I  + G      G  +               P+ L              + + A+  
Sbjct: 118 CAAILSQHGEVLATKGNFN----------NDIGVPLTLL---RLEPKHQYAVIELGANHI 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +  D +K       N+   HI+   +      AK  +F   L     A+I AD  Y
Sbjct: 165 GEIAYTTDLVKPDVAVVCNVAAAHIEGFGSLDGVAQAKGEIFSG-LKAGGIAVINADSPY 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               +     +     S+  Q              +    +    +      P+ G+  +
Sbjct: 224 VDYWLTSLDKSTLCQFSMSQQLDVWPENIHLDKLGRAGFDLCTPTERIAVQLPIAGKHNI 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL+A  L + +G+  A V + L  + +V GR   +  N     I   Y     S++  
Sbjct: 284 TNALIACALTLPLGVTLAHVAQGLASMPMVQGRVNLIEVNDSLTVIDDTYNANVQSVKAG 343

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKR 399
           +  +  I  G  I  FG  G+     R
Sbjct: 344 IDLLGQI-EGHQIFAFGDMGELGADAR 369


>gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 10403S]
          Length = 457

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 145/374 (38%), Gaps = 26/374 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                 ++ P+++V++T   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKDVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    N   R L+ G                +    I+    + +   P
Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTI 379
             +L+ +LK    +
Sbjct: 338 PTALKTVLKTFMHM 351


>gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Staphylococcus aureus 04-02981]
 gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 452

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLGTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437


>gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R]
 gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 514

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 83/490 (16%), Positives = 160/490 (32%), Gaps = 47/490 (9%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +   +      +  ++  V  DSR +  G +F+A+ G + DGH F   
Sbjct: 1   MITMTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAAT 60

Query: 63  AIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNT-------RKFLSLFASRLYGK 112
           AI +GA A++ +    +         I+ +   +   +         + LS  A  +   
Sbjct: 61  AIEKGAVAVLAAREVDVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSRLARHVVDI 120

Query: 113 ----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               H  N++A+TG++GK+S   F+  +  + G +    G  +            T    
Sbjct: 121 CVAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTALRCTTD-- 178

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             + A   G  +H  +       +  N+G  H+    +++    
Sbjct: 179 -----------TKYLVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQ 227

Query: 229 AKMRLFE--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           AK  + E          A++ ADD +   +  R         +   Q             
Sbjct: 228 AKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFSTDAGQANKSDYWATSISL 287

Query: 287 N---KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VV 342
           +   +   T++ +   +     + GE QV NAL AA + +  G+   LV+  LE      
Sbjct: 288 DAVARASFTLNTKDGSWPVALQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAAS 347

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR----IIVVFGCG---GDRD 395
             R +          I   Y    +S+   +  +    SGR       V G     GD  
Sbjct: 348 AHRMDVKTRADGVTIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDA 407

Query: 396 QGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +G           +   +NP   +   +               +   A+     
Sbjct: 408 SEAHAELGAELAKYNVQELVAVGENP---NCAALAESAASLGVSTHVVSDVDAALELLAG 464

Query: 455 MLNKQDVLVV 464
            + + DV++V
Sbjct: 465 HIKRDDVVLV 474


>gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
 gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
          Length = 457

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA++
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV    S            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLVGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-003]
          Length = 457

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 145/374 (38%), Gaps = 26/374 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                 ++ P+++V++T   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    N   R L+ G                +    I+    + +   P
Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTI 379
             +L+ +LK    +
Sbjct: 338 PTALKTVLKTFMHM 351


>gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           loihica PV-4]
 gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella loihica PV-4]
          Length = 456

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 148/407 (36%), Gaps = 30/407 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     EL   L+   +   +  +++VSSDSR + A  +FVA+ G + D H F  +A+ 
Sbjct: 1   MIPLKLSELAKVLNAKHIGD-DLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVM 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V     +           P L+V N++K +    + +        +A+TG++G
Sbjct: 60  DGASALLVERELPIAA---------PQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   V  I        +  G  +               P+ L               
Sbjct: 111 KTSVKEMVATILSTQHQVLYTAGNFN----------NEVGVPLTLL---RLEPQHEYGVF 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    ++       N+   H++   + +    AK  +F  L       I
Sbjct: 158 ELGANHLGEINYTSSLVQPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVI 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D          A +      S G        +         +  I+   +      P
Sbjct: 218 NADDAFADVMRRAAASHTQLSFSSQGNPADVSADELSADALGCYRFRIAYLDEQRTVSLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YA 363
           L G  QV NAL A  +C+A+G+    +++ L +L  V GR +       G  + +D  Y 
Sbjct: 278 LSGRHQVSNALAATSICLALGLSLDEIVQGLMRLQPVKGRMQ---PTRLGRFLLIDDTYN 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
               S+   +  ++ I   R +V+   G  GD        +G+ A  
Sbjct: 335 ANPASVGAAIDWLQEIEGNRCLVLGDLGELGDNASLLHRQLGEKAKQ 381


>gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
 gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
          Length = 427

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 137/378 (36%), Gaps = 24/378 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R +  G +FVA+ G + DGH F             V++       S  +    P 
Sbjct: 1   MTIDTRKVTPGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKRLLVGGPQ 51

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G  + 
Sbjct: 52  LVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNN 111

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      TP                   + + A+  G   +  D  +  +    NL
Sbjct: 112 DIGVPLTLLRLTPE-------------YDFAVIELGANHIGEIAYTTDLSRPESALVNNL 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++   +      AK  +F  L  K +  I    + +        H    R    G 
Sbjct: 159 AAAHLEGFGSLAGVAQAKGEIFAGLPAKGTAIINADSNDWPHWQETLHHKRVWRFAPHGA 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +        V         T+           PLPG   + NAL AA L +++G   A V
Sbjct: 219 EDIDFFASDVRIASQVTYFTLHSPFGTVAIELPLPGRHNIANALAAAALAMSVGASLAAV 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
            E L +L  VPGR   +   +    +   Y     S+    + +  +   R++VV   G 
Sbjct: 279 REGLTQLQAVPGRLFPIELAAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMGE 338

Query: 391 GGDRDQGKRPIMGKIALD 408
            G+        +G+ A  
Sbjct: 339 LGETAVDCHRQVGEAAKQ 356


>gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
 gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
          Length = 436

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 131/399 (32%), Gaps = 26/399 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
             + ++ + +DSR I+ G +F A+ G + D H F+   ++ GA A+VVS         A 
Sbjct: 4   ENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGGA- 62

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  L VD+T   L   A          +  +TG+ GK++V   +  + +R      
Sbjct: 63  -------LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDA 115

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                   ++           P+ L              + +  +  G         K  
Sbjct: 116 VSATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAKPD 165

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A    N  R H+                    L  +  A+I  +DA       +      
Sbjct: 166 AALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVF--KTATFNL 223

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              + G     +  + +       +  +    +    + P+PG   V+NA  AA L +A 
Sbjct: 224 NTCTFGVDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAA 283

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    V E L+    + GR            I   Y    +S++  +  +  + + R I
Sbjct: 284 GLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAVDVLARMPAPR-I 342

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
            V G  G+  + +   M       A     + A    DN
Sbjct: 343 FVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 381


>gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 448

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 157/425 (36%), Gaps = 42/425 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   L+     + +   ++  S +S+++    +F+ + G++ DGH F
Sbjct: 1   MNL------WLSEIAKALNGEIKNFSDDILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
           + +A+  GA + +    +             P + V +T   L   AS +  K     ++
Sbjct: 55  VEEALQNGAISFISQKEFK--------NVRVPYVKVKDTLVALQDLASYVRDKLKGLTVI 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +      +    G          +N +  P  I     L+   
Sbjct: 107 GVTGSVGKTSTKEYIFNVLNYKYKTFKNQGN--------FNNHIGLPFSI-----LNMPE 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +    +  S+ G         K   G  TN+G  HI+  +++   F AK  + + + 
Sbjct: 154 DTQIAVFEMGMSNFGEISKLSQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMA 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   +D  +   + +       +            K V    N     +     
Sbjct: 214 DDGMLIINNDNDILN---LHKGELKKRIITIGIENESHFRAKNVQRHQNGFSFEVD---- 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           ++ +         +YN+L A  + I +GID  L+ E + +   +  RFE +   S    I
Sbjct: 267 NYTYFIESFNFHDIYNSLFAIAVGIILGIDRQLIKEAIRRKERLKRRFEIIQKGSI-TVI 325

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
              Y  +++S+   + +I     G+ I+V G     G+  + +   +G+ I     D+ I
Sbjct: 326 DDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384

Query: 415 VTDDN 419
            T  +
Sbjct: 385 CTGKD 389


>gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
 gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
          Length = 452

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 161/467 (34%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCKIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNRIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S+   +  + T+ +GR I++ G     G+  +     +G    +     + T  N  
Sbjct: 338 SPTSMRAAIDTLNTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437


>gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 471

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 86/470 (18%), Positives = 155/470 (32%), Gaps = 37/470 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V  DSR    G +FVA VG + DGH +   
Sbjct: 1   MIALSLAEIAEVVGGQTHDIPDPSVMVTGPVVRDSREAVPGSLFVAFVGERADGHDYARA 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A++ S                P +VVD+ ++ L   A  +  +    ++A+TG
Sbjct: 61  VVETGAVAVLGSRPV-----------GVPAIVVDDVQRALGALARHVVERLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +    + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLRTKAPTVFTPGSLNNEIGLPLTALSATAETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240
             + + A   G  ++  +      G   N+G  HI     ++    A  ++        +
Sbjct: 158 -VLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ ADD Y K +  R                      + A   +   ++       
Sbjct: 217 GGVAVLNADDPYVKAMAARTTARVLLFGESDEADVRAENVTLTAAG-QPSFSLHTPSGCS 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +   +G+ +  +   L +       R E          + 
Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGMSAKEIATALSEAGSLSRWRMEVTERPDGVTIVN 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414
             Y     S++  L+ +  +  GR    V G     GD    +   +G++A+ L     +
Sbjct: 336 DAYNANPESMKAALRALAAMGRGRRTWAVLGRMAELGDEALAEHDAVGRLAVRLNVGKLV 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  S        E   G        +   A+      L   DV++V
Sbjct: 396 AVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 444


>gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 448

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 160/452 (35%), Gaps = 49/452 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L+        E+   ++     +  +  +   S +S++I+   +F+ + G++ DGH F
Sbjct: 1   MNLR------LSEIATAINGELRNFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
           I +A+  GA + +    +             P + V++T   L   A  +  K     ++
Sbjct: 55  IKEALQNGAISFISQKDFD--------DLKVPYVKVEDTLLALQSLACYVRRKLNHLKVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +      +    G  +                           
Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPED------------ 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  S+ G         K   G  TN+G  HI+  +++   F AK  + + + 
Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMP 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   +D  +    +         +      +  ++++        Q   S E  
Sbjct: 214 ESGILIINNDNDILNLHKKELKRKVVTIGIENESNFRAQNVQR-------HQNGFSFEVG 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + +         +YN+L A  +   +G+D  L+ E + +   +  RFE +   S    +
Sbjct: 267 GYTYFIESFNFHDIYNSLFAIAVGTILGVDRELIKEAIRQKERLKRRFEVIKKGSI-TIV 325

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
              Y  +++S+   + +I     G+ I+V G     G+  + +   +G+ I     D+ I
Sbjct: 326 DDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHKKVGRYILQKPIDVVI 384

Query: 415 VTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444
            T      +D   I  E+    G   +    +
Sbjct: 385 CT-----GKDAFYIFDEVKKKDGTKAYFVTKD 411


>gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 436

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/467 (16%), Positives = 165/467 (35%), Gaps = 49/467 (10%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L  ++   +        +       +    DSR ++ G +FVA+ G + DGH F  +A 
Sbjct: 3   ELSARELASICRG----KLYGESTTFSGFCIDSREVKEGNVFVALRGGRHDGHDFAQEAF 58

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           ++GA   +V     +             ++VD+T + L   A          ++ V G++
Sbjct: 59  SRGAVGAIVQRGIKVPKGKF-------YVLVDDTLEALRRIALYRRRLFTGRVIGVAGSA 111

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +  + G                 ++++  P  I      ++        
Sbjct: 112 GKTTTKEMIAFLLSKIGKVCKTPKN--------YNSQIGLPFSI-----ANFEEDCQFWV 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V + AS  G  ++ +   K      T +G +H++              +FE++  ++   
Sbjct: 159 VEMGASQKGDVKNLVKLAKPHVRVITAIGEEHLETFGCLDDVIVGNGEIFEDMQERDVAV 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +              +H    + +    +G  +    +          I+ + +D     
Sbjct: 219 LPKYV----------SHCYELKNVITFGEGGDLQATNIKLSKEG----ITFQVEDVSLSL 264

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +P    + NAL + G+  A+G +   +  HL      P RF  +   S    I   Y  
Sbjct: 265 RVPSLAVLENALCSLGVLKALGYNWKELSHHLANFSPAPQRFHLIRKGSF-LIIDDTYNA 323

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPR 421
              S+   L ++      RI ++      G   +     +GK+  +L  D  I    + R
Sbjct: 324 NPPSVRKALLSLSLFDGYRIALLGDMLELGPMSEAYHREVGKLCAELGIDACIFYGTHMR 383

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E +R  ++          ++ EA+R    ++ +  V++V  KG
Sbjct: 384 FAYEECLRHGVLCYHS-----SSKEEALRYLSSLIREGSVILV--KG 423


>gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
 gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
          Length = 452

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QGGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLGTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437


>gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 456

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 162/469 (34%), Gaps = 37/469 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L+   +   +  +  +++D+R      +F A+ G   D H ++ +A+ 
Sbjct: 1   MIKLTTQQLAQILNANLIGDGQAVVENINTDTRKAVFNSLFFALKGEHFDAHQYLDKAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV  A            +TP LVV +TR  L   A  L  K    I+A+TG+SG
Sbjct: 61  QGATALVVQKA--------NTNISTPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q         G    +     +       P+ L              +
Sbjct: 113 KTTVKEMTASILQ------QTAGNPEAVLFTNGNFNNDIGVPLTLL---RLTEQHKFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   + +    AK  ++  L P      
Sbjct: 164 ELGANHQGEIDYTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTP-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        ++             + G     + V    N     +       +   P
Sbjct: 219 GMAIINSEHNYIELWQKEIGSHAIQYFNGGDYKAENVEHSPNGSTFMLVSPKGSIEINLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE    V GR   +  N     +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNENLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL+  +  ++   + RI++V      G+        +G+ A       ++        
Sbjct: 339 VDSLQAAIDVLKGYDAFRILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVL----SYGT 394

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGKG 468
           +   I   ++          ++ E    A+++    L +   +VV  KG
Sbjct: 395 ESAVISEAVLG-----KHFTDKAELTAYALDIIKQKLQENQKVVVLAKG 438


>gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
 gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
          Length = 466

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 135/370 (36%), Gaps = 10/370 (2%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                +   VS+DSR ++ G +FVA++G + DG  F+  A  +GA A ++          
Sbjct: 16  SGSNVRFTGVSTDSRTLKQGELFVALIGERFDGGKFVSNAKEKGAVAAMLQKDAE----P 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A +  + P++ V ++R  L   A+    +    ++ VTG++GK++    +  I + +   
Sbjct: 72  AGLSGDFPVIRVQDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTKEMIAAILRVAASD 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  I   +        N             L          + +  +  G   +     +
Sbjct: 132 NAIINDPAERVLATAGNLNN--DIGVPQMLLRLRRQHQYAVIEMGMNHLGEIAYLTRLAR 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN G  HI+   + +A   AK       L +   AI  ADD Y+    +     
Sbjct: 190 PNIAVITNAGAAHIEGLGSVEAVARAKA-EILVGLDQSGTAIFNADDRYASLWRE--CAG 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              ++  G   K               + + +     +     PG   +YNAL AA +  
Sbjct: 247 AREIIDFGLTEKARVSAVYRLGRLVNTLQLRLPDATVEVKLQAPGVHNIYNALAAAAVAW 306

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           ++GI    ++  LE+   V GR +          I   Y     S+   L  +     G+
Sbjct: 307 SLGIKKEWIVAGLERFQSVHGRLQKKCGLHHAVLIDDTYNANPESVRAALAVLAA-AEGK 365

Query: 384 IIVVFGCGGD 393
            I+V G  G+
Sbjct: 366 KILVLGDMGE 375


>gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
 gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
          Length = 457

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 26/374 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                 ++ P+++V++T   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    N   R L+ G                +    I+    + +   P
Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTI 379
             +L+ +LK    +
Sbjct: 338 PTALKTVLKTFMHM 351


>gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 462

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 147/427 (34%), Gaps = 35/427 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
                  +N V +DSR    G +F  + G + DGH F  QA  +GA AIV          
Sbjct: 19  QGLENAPVNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGALAIVAHRDLGSI-- 76

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 NTP+L VD+T K L         K    +L +TG++GK++    + ++ +    
Sbjct: 77  -----QNTPVLAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEILAEVLKTRFT 131

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                      +    +N+L  P  + + K         +   +   ++   +   +  +
Sbjct: 132 V--------GKNHKNWNNQLGLPLSLLMQKGDEDFWIMELGINN---TTDMDELGEI--L 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
              A    N+G  H++          AK R     L     A   A        +KR   
Sbjct: 179 LPDAALILNVGPCHLEGLGDVSGVARAKAR-----LLDYLRAEHRAFINLDYPDLKREAG 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A   + +  +  +        +        +++  ++  F  P+ G     N      + 
Sbjct: 234 ARPDLNTTWFSSRDPEADCRVSHSRDNLFVLNLNEEEIPFHAPVQGAHFCENLAAIWAVA 293

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381
           +  G+    +   LEK  +   R     +      I   Y     S++  L+  R++ + 
Sbjct: 294 LEYGMQPDEIQAGLEKSSLPEQRMCISRSGDW-TIIDDSYNANPMSMQAALETARSLASG 352

Query: 382 GRIIVVFGCGGD--RDQGK-RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIP 437
           G +++V G   +  RD+ +    +G+     A     T      ++ E + + +   G  
Sbjct: 353 GDLVLVLGDMAELGRDEARAHRDLGRSLCAGA----FTALFYNGDNLEHVLSGMNGEGSR 408

Query: 438 GFIEKGN 444
              +  +
Sbjct: 409 KAHKIKD 415


>gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 459

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 138/403 (34%), Gaps = 21/403 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++   L    M      +  VS+DSR      +F A+ G   D H ++ +A  
Sbjct: 1   MITLSLSQIAAILGAELMGDGTVIVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A VV               N   L+V ++R  L   A  L  K    ++A+TG+SG
Sbjct: 61  QGCVAAVVEHPTEG---------NIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I Q+S + S        +     +       P+ L              +
Sbjct: 112 KTTVKEMVASILQQSAVDSD------DVLFTQGNFNNDIGVPLTLL---RLTEQHKFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +       N+   H++   +      A        L +   AI
Sbjct: 163 ELGANHIGEIAYTTSLAQPDVALVNNVMAAHLEGFGSLDGVATA-KGEIFRGLTENGVAI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I     Y ++          +  +        + +++          +           P
Sbjct: 222 INLAHNYQQKWQADIGRHAVQYFAYDNPRADFYAEQIHFSEQGAYFLLHTPQGRVQINSP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  + NAL A  L + +G  +A V + LE   +V GR   +        +   Y   
Sbjct: 282 YLGEHNISNALAATALAMNVGATTAQVKKGLETPSLVKGRLFPIQPCENLLLLDDTYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
             S++  +  ++   + R+ VV   G  GD  Q     +G+ A
Sbjct: 342 VGSMKSAISVLQKYPAFRVFVVGDMGELGDNAQLCHQEVGEFA 384


>gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 452

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 154/453 (33%), Gaps = 42/453 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              ++ + ++    Q  +  +  V  DSR ++ G +F  IVG K DGH F  QA+  GA 
Sbjct: 4   TLTQIASAMASSIEQDHDLTVGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQAVENGAC 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V S+   L         + P+L+V +T   L   A     K    ++ V+G++GK++V
Sbjct: 64  AVVASAPLDL---------DVPVLLVRDTTSALGRLARAWREKTRARVIGVSGSAGKTTV 114

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              + Q+   +G ++      +                            +    + +  
Sbjct: 115 KEMLAQVLSAAGRTAKNFRNLNNQIGLPLSILEMDGD-------------EDFWVLELGI 161

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G        +   A    N+G  H++   +              LL           
Sbjct: 162 SRPGDMDELGYILAPDAALLVNIGACHLEGLGSLAG----VAEQKAVLLDHVRKGGFACV 217

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +A   E+M+ +     ++++    G       +   +    ++ +      +    +   
Sbjct: 218 NADYPELMQESTKRSPKLVTFSGTGARADYSCLRQENVAGAISYTFRVGHEELRCTVSAG 277

Query: 310 FQVYNALVA-AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTS 366
             V   L A   + + +G+  A +   L     V  RF        G  +++D  Y    
Sbjct: 278 IHVAENLAAVVAMAMELGMTFATIESALSAYSPVAQRF---VQTRVGTWLFIDDTYNANP 334

Query: 367 NSLEMILKNIRTITSGRIIVV-----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            S+   +   + +  G+ +V+        G D  +  R + G IA   A           
Sbjct: 335 VSMARSIGEAKRLGEGKRLVLVLGDMLELGRDSVRAHRELGGLIADTGASHCFF--QGRY 392

Query: 422 SEDPEKIRAE---IIHGIPGFIEKGNRIEAIRT 451
           +ED +    +   I   + G  E    + A+R 
Sbjct: 393 AEDVKDGLGDYNGIFMKVSGAEEVLQALNAVRR 425


>gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
          Length = 457

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 166/457 (36%), Gaps = 49/457 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            +E +++ V  DSR  +   +F A+ G + +GH F   A   GA A+VV           
Sbjct: 21  GKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGACAVVVKREIE------ 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++   + V++T K L   A     +     +A+TG++GK++       +  +   + 
Sbjct: 75  --GADCFQIKVEDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMTASVLSKKYKTM 132

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             IG  ++          TT  P+ L    +      +  V +  +  G  +   + ++ 
Sbjct: 133 KTIGNFNS----------TTGVPLTLF---NLEQGDEIAVVEMGMNHKGEIEKISELVEP 179

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  HI+   +++  F A      + L K    ++  DD       K   N  
Sbjct: 180 DLAMITNVGVTHIENLGSKENIFKA-KTEITKGLKKGGTLLVNGDDE----FFKDYTNDE 234

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V+ VG          +       +  +   GK++ F   +P ++ VYNAL A      
Sbjct: 235 FNVVKVGINHGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYTGFH 294

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSG 382
            G++   + E L+       R +       G  +  D Y     +L+  L  +  I  + 
Sbjct: 295 FGLNYEQIKEGLDDFMPTGNRMKIE--EVNGITLIDDTYNSNPEALKEALGLLNRIGGNN 352

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN-------PRSEDPEKIRAEI 432
           R + V G     G++ + +    GK A +     ++   +          E+       +
Sbjct: 353 RKVAVLGDMLELGEKSEEEHEACGKAAAENGVELLLACGDYAMHYIKGAGENGMDPGKAL 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                 ++        +    + L + D ++V A +G
Sbjct: 413 YFFEKNYL--------VEEVFDFLKEGDFVLVKASRG 441


>gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae T3T1]
          Length = 456

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 88/469 (18%), Positives = 161/469 (34%), Gaps = 37/469 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L+       +  +  +++D+R   +  +F A+ G   D H ++ +A+ 
Sbjct: 1   MIKLTTQQLAQILNADLTGDEQAVVENINTDTRRSVSNSLFFALKGEHFDAHQYLDKAVE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A+VV  A +            P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGAAALVVQQANTEIAT--------PQLVVADTRLALGQLAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q         G    +     +       P+ L              +
Sbjct: 113 KTTVKEMTASILQ------QTAGNPEAVLFTNGNFNNDIGVPLTLL---RLTEQHKFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   + +    AK  ++  L        
Sbjct: 164 ELGANHQGEIDYTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTQ-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        ++             + G+    + V    N    T+       +   P
Sbjct: 219 GVAIINSEHNYIELWQKEIGSHAIQYFNGRDYKAENVKHSPNGSTFTLVSPKGSIEINLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE    V GR   +  N     +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNENLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL+  +  ++   + RI++V      G+        +G+ A       ++        
Sbjct: 339 VDSLQAAIDVLKGYDAFRILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVL----SYGI 394

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVVAGKG 468
           +   I   ++          ++ E    A+++    L +   +VV  KG
Sbjct: 395 ESAVISEAVLG-----KHFTDKAELTAYALDIIKQKLQENQKVVVLAKG 438


>gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
 gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
          Length = 461

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 152/480 (31%), Gaps = 37/480 (7%)

Query: 10  DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              E++             + +  +  DSR  +    FVAIVG   D H +I  A   G 
Sbjct: 5   TVKEIVEASKGNLKNGEGSESVKAIVIDSRLAKEDTAFVAIVGENNDAHKYIGSAYDLGC 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              +V+    +      I+S+  I+ VD+T K L         K     + +TG+ GK++
Sbjct: 65  RVFIVNKGKDID-----IKSDMNIIEVDDTSKALGDIGHYYKKKFDILFIGITGSVGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V         +       +               P+ L    S         + + 
Sbjct: 120 TRDMVYAALSSERATLKNEKNFNNHFGV----------PLTLFNLDSS---YECAVIEMG 166

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  ++  + +       +N+G  H++   +Q+  F AKM +    +   +  +   
Sbjct: 167 MSGFGEIEYLANMVNPKVAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGD 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D   S                      +     +     + + ++    +      P  G
Sbjct: 227 DKFLSTLRDAERDYDLITFGFEKNNDIYCVAYDMTEDSIEFECSVMGNIEKIF--IPTVG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  +YNA+ A  +    GI    +   L        R + +        I   Y  + +S
Sbjct: 285 KHNIYNAMAAIAVGTVEGISMEGIKRGLSNFEATGMR-QDIRKIGEYTVINDTYNASPDS 343

Query: 369 LEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +E  L  +     GR I V G     GD  +     +GK  +D +D  I+T      E  
Sbjct: 344 MEASLSILGRY-EGRRIAVLGDMLEMGDLAEFGHRRVGKACVDNSD-VIITV----GESA 397

Query: 426 EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH--ETVHIVTNGE 479
             I  E       +       N  +A +   E++   D ++  A +G   E         
Sbjct: 398 VFINKEAEENGFDVKNSYHFDNLEDAKKLLGEIMQSGDTMLFKASRGMKFEKFVEYVKEV 457


>gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes J0161]
          Length = 457

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 145/374 (38%), Gaps = 26/374 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                 ++ P+++V++T   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    N   R L+ G                +    I+    + +   P
Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTI 379
             +L+ +LK    +
Sbjct: 338 PTALKTVLKTFMHM 351


>gi|330938043|gb|EGH41811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 106

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIE 454
           KRP+M ++   LAD   VTDDNPRSE P  I  +I  G            R +AI   I 
Sbjct: 1   KRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIA 60

Query: 455 MLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
             N  DV+V+AGKGHE    + NG+++   D       L +
Sbjct: 61  SANADDVVVLAGKGHEDYQEI-NGQRQPFSDLQEAASALAV 100


>gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 473

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 92/450 (20%), Positives = 154/450 (34%), Gaps = 41/450 (9%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT--- 90
           + DSR I  G IF A+ G   DGH F+  A   GA   VVS+ +      A   ++    
Sbjct: 32  AIDSRKISGGEIFFALKGEHTDGHAFVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTE 91

Query: 91  -PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              L V +    L   A+R   K P  I+ + G++GK++             +++  +G 
Sbjct: 92  NLFLSVQDPLVALQKLANRYRKKFPIPIVTIAGSNGKTTTKE----------MTAAVLGT 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T  + +   +       P+ L           +  V +  + HG         +   G  
Sbjct: 142 TFRVVATEGNFNNHIGVPLTLF---RLRDDTEIAVVEMGINHHGEMNELCQIAEPTHGLI 198

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G +H ++  T +    A+  L+  L        + ADD  + +     +      + 
Sbjct: 199 TNIGHEHCEFLGTPEEIAMAEGELYRYLSRTGGSGFVNADDGLASQTAGELNLQTLYGIE 258

Query: 270 VGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               G  I  K+V           I    +       + G   VYNAL AA + +  G  
Sbjct: 259 QPNLGLNIWAKEVQLNQQGCASFKICTPKQALTLNLQISGRHNVYNALAAAAIGLNFGAK 318

Query: 329 SALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRII 385
              V   LE         R E +   +    +   Y     S+   L  + + I  G+ I
Sbjct: 319 LESVKLALEHFVPKSGSKRMERI-CAAGLTILNDSYNANPESMRSALGTLASLICDGKKI 377

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS----EDPEKIRAEIIHGIPG 438
           V+ G     G   + +   +G+              N       E P K       G   
Sbjct: 378 VLLGDMLELGSVSETEHRKLGEFIEAAGIDLFFGFGNAMKWTCQEAPNK-----CKG--H 430

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           F  K   ++A++   E+    D L+   KG
Sbjct: 431 FNTKSEMVQALK---EVAAPGDALLF--KG 455


>gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
 gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
          Length = 467

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 163/471 (34%), Gaps = 44/471 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+        +     + + VS+DSR +  G +FVA+ G + DGH FI  A++QG  
Sbjct: 3   TLNEIAEATGGRMIGEGAGEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQGIT 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +   +++ +     +      ++V +T + L   A+    +     + VTG++GK++ 
Sbjct: 63  VFLAEESWAERH---ELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              + +I  ++G      G  +               P+ +         +      +  
Sbjct: 120 KEMLARILAQTGPGLKTEGNLN----------NLIGLPLTIF---RLTGRERWAVFEIGM 166

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S  G +  RL  I +   G  TN    H++   + +    AK  LF   L   S A+   
Sbjct: 167 SEFG-EIDRLAEIAEPQVGIITNAFPAHLETLGSVEGVARAKGELFLR-LKPGSVAVYNV 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD          +         G   +             +  T+ +   +        G
Sbjct: 225 DDPLVSACPTHLNVTRLTFGLRG--AEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              +YNAL AA    A+G+   ++ + LE+      RF+          I   Y     S
Sbjct: 283 RHNIYNALAAAAAAHALGVSGEVIRQGLEEFSPYDKRFQLEEVAGV-TLIDDSYNANPAS 341

Query: 369 LEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   L  ++ +   GR++ V G     G   +     +GK+A    D   +         
Sbjct: 342 MAAALTTLKELQGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGSVDRLCL--------- 392

Query: 425 PEKIRAE-----IIHGIPGFIEKGNR--IEAIRTAIEMLNKQDVLVVAGKG 468
             K+  E     +  G+P       R   +  +  +  +   D ++   KG
Sbjct: 393 LGKLIDETAKGALEAGLPETDLVLGRDHEQLAQELLTFVQPGDCILF--KG 441


>gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 453

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 145/384 (37%), Gaps = 23/384 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +++ V +DSR  Q G +FVA+ G + D H F+ + +A+GA A+V          ++
Sbjct: 17  GADGEVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVARGAAALV--RDGFELAGAS 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            I++       D+TR  L   A+      P   + VTG++GK++V   +  I +    + 
Sbjct: 75  LIQAG------DDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTVKEMLAAILRAHAGAD 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +      ++           P+ L +            + +  + HG   +     + 
Sbjct: 129 AVLATAGNFNNDI-------GLPLTLLQ---LKPQHRYAVIEMGMNHHGELSYLTGLTRP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N  R H  +  + +    AK  +FE  L     A++ ADDA        A +  
Sbjct: 179 QVALVNNAMRAHFGHFGSTEDVARAKAEIFEG-LIDAGVAVVNADDANLPLFRAAAGSH- 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R LS G     +  + +       + T+           P PGE  V NAL AA   +A
Sbjct: 237 -RQLSFGLGLADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAAAAAALA 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           + +  A + E L       GR +   +      I   Y    +S++  +  +  +   R 
Sbjct: 296 LEVPLAAIAEGLSAFAGAKGRLQIKQSPRGLTVIDDSYNANPDSMKAGIDVLAGLPGPRC 355

Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406
            V+   G  G+        +G+ A
Sbjct: 356 FVMGDIGELGEAAPALHAEVGEHA 379


>gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
          Length = 509

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 152/471 (32%), Gaps = 46/471 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              E+ +          +  +   V+ DSR +  G +FVA+VG + DGH +   A +QGA
Sbjct: 47  TAQEIASITGGELSCPSDVTVTGQVTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQGA 106

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTS 124
             ++                  P +VV +T++ L   A     +  E     ++ VTG++
Sbjct: 107 VLVLSQKNI----------KGVPCVVVADTQRALGDLARAHLARLREKGHIRVIGVTGSA 156

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + Q+    G      G  +          LT                     
Sbjct: 157 GKTTTKDLMGQMLATYGNVVVPAGSLN----NELGLPLTVLKADET---------TDFLV 203

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             + AS+ G D H L  I  +  +   +                         L  +  A
Sbjct: 204 TEMGASAVG-DLHYLTSIAPLDIAVVLIVGLAHLGGFGSAELVAQAKSELVTGLLPQGIA 262

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ ADD     + + AH       SV          +  A         +  G       
Sbjct: 263 VLNADDHRVIAMKELAHGQVRTFGSVRGADMRAINARTDAAGRAHFDVETTAGDTASVTL 322

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYA 363
            L GE  V NAL A     A+G+        L       P R + V        I   Y 
Sbjct: 323 TLVGEHHVTNALAALTAVTALGMPLDQAAVALSAARATSPHRMDVVDRPDGVTIIDDSYN 382

Query: 364 HTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVT 416
              +S+   L+ + T+     R + V G     G + +     +G++ + L  + + +V 
Sbjct: 383 ANPDSMRAALRALATVAGRQRRTVAVLGEMRELGPQSRTYHDDIGRLVVRLNISRLIVV- 441

Query: 417 DDNPRSEDPEKIRA-EIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +  + I    +  G      +E  +   A     + L   DV+++
Sbjct: 442 -----GQGAQGIADGALQEGSWGDEVVEVADLNAAHAALNDYLQPNDVVLI 487


>gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes Clip81459]
 gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 457

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 144/374 (38%), Gaps = 26/374 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                  + P+++V++T   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKDVPNP------PMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    N   R L+ G                +    I+    + +   P
Sbjct: 223 -----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTI 379
             +L+ +LK    +
Sbjct: 338 PTALKTVLKTFMHM 351


>gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 477

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 151/448 (33%), Gaps = 38/448 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR    G  F AI G++ DGH +   A+A GA  +VVS A       A  R  
Sbjct: 26  ITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++    L         +    I+AVTG+ GK++    ++ +   SG     +  
Sbjct: 82  VPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKTTTKEMLRHVLAPSGKVHASVAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA               V  +  G  +  +  I+      
Sbjct: 142 FNNHWGV----------PLTLA---RMPEDTDYGVFEVGMNHPGEVRPLVAMIRPDVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   +  +    AK  +FE L P     +   +D ++             + S
Sbjct: 189 TTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGIEHIHS 248

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   K    L +         + +++ G+  +     PG     NAL A G+   +G D
Sbjct: 249 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAALGVVRIVGAD 308

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMIL---KNIRTITSG 382
               +E L  L    GR +    +  GG   +    Y     S+   +           G
Sbjct: 309 MQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPASMRAAIALLAASEPTGRG 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALD-LADIAI--VTDDNPRSEDPEKIRAEIIHGIPGF 439
           R I V G            MG  A     D+A+  +              A +   +P  
Sbjct: 369 RRIAVLGDML--------EMGDYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPES 420

Query: 440 IEKGNRI---EAIRTAIEMLNKQDVLVV 464
           +    R    E     +  +   DVL+V
Sbjct: 421 VHVEYRENTSELTDYVLNSVAPGDVLMV 448


>gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 465

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 141/409 (34%), Gaps = 26/409 (6%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +    +I  L          E KI  V  DSR +  G +++ I G K +GH ++ QA
Sbjct: 1   MIIRSIDAIIRMLDADYIENGAIEEKIQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           IA GA+A++                   +++V++T K L   A     +    ++ +TG+
Sbjct: 61  IANGAKAVLWERK------EPNPPKEVVVILVEDTTKALQDLAKAYRHQLNMKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    +  + Q   ++   +G                  P+ L    S   +    
Sbjct: 115 NGKTSTKDILASLLQEHYITQKTLGN----------YNNEIGVPLTLL---SLSENVEAA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +   + G        ++      +N+G  H++  +T +    AK+ + E L      
Sbjct: 162 VIEMGMENLGELSFLTHMVEPDIAIISNVGTAHLENLKTMENIAKAKLEIVEGLKEHGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 +     V +       R+ + G + +  ++        ++ V+  +      + 
Sbjct: 222 IYNGDQEILQNAVTQAQIPGHIRIRTFGVKPQNDYVISH-ITQKREGVSFCLNDDVCPYH 280

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G+ Q  NA  A     A+G+    + E  + +     R E V   +    +   Y 
Sbjct: 281 VDMIGKHQAMNATAAWIAAKALGLSVEEIREGYQNIEKTGLRNELVDFGNC-LILNDSYK 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409
               S    L  +        I V G     GD        +GK     
Sbjct: 340 SNPQSALAALDTMEEFDVPYKIAVLGDMLELGDTSDMIHYTLGKDLAKY 388


>gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
 gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 152/394 (38%), Gaps = 25/394 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +            T                    + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++   LP+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLHTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            +  +   R +VV      G         +G+ A
Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEAA 379


>gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
          Length = 453

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 147/410 (35%), Gaps = 30/410 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+ VS+D+R I+   +F+A+VG + D H F  QAI  GA+A++V  A  +     
Sbjct: 19  GADSIISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAKALMVERALDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               +   +VV NT++ L      ++ +     +A+TG+ GK++V   V  I    G   
Sbjct: 74  ----DVAQIVVSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMVASILSAKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L              + + A+  G   +    +K 
Sbjct: 130 YTAGNFN----------NDIGVPLTLL---RSSQKDDFAVIELGANHIGEIAYTTQLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L     A++  D    +   +   +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKQA-KGEIYQGLAPGKTALVNLDSHGGELWSQVLVDKH 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  SV  Q       ++      +    +     +      + G+  V NAL A+ L +
Sbjct: 236 VKTFSVNQQNADFFASQIALNQAGEASFILHTPQGEQPVTLGILGQHNVSNALAASALAM 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G     V   L +L  V GR +          I   Y  +  +++  ++ + + +  R
Sbjct: 296 EMGASIEEVAVGLAQLSAVKGRVDVSQLTPMIRLIDDSYNASVPAMKAAIELLASFSGCR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +++      G         +G+ A       ++T      ED   I  +
Sbjct: 356 WLILGNMAELGTESLALHQQVGEHAAPFQFDYVLT----YGEDARVISQQ 401


>gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes LO28]
          Length = 447

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 140/363 (38%), Gaps = 24/363 (6%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
             SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      
Sbjct: 3   DSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKN 62

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                      ++ P+++V++T   L   A++   +    ++A+TG++GK++    +  I
Sbjct: 63  VPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 116

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +    +  G  +          LT P    +A     ++ +    V  + +   +  
Sbjct: 117 VETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIA- 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN+G  HI+Y  +++    AK+ +   L P            + + +
Sbjct: 175 -----------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETL 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +    N   R L+ G                +    I+    + +   P+ GE  V+N +
Sbjct: 219 LLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVPIIGEHNVFNTM 278

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A      IGI+   +   L+ +     R E++ T S    +   Y  +  +L+ +LK  
Sbjct: 279 AAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTF 338

Query: 377 RTI 379
             +
Sbjct: 339 MHM 341


>gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
 gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 138/401 (34%), Gaps = 29/401 (7%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   ++   L I     +   I  VS ++R ++ G +F+   G   +GH ++  AI  G
Sbjct: 2   KKQIEQVAKWLDI-KTNLKGIDITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELG 60

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +                + P+L V++    L   A     +    ++ +TG++GK+
Sbjct: 61  ASASLWQRD------EPGAPEDLPLLFVEDCEVALQEMARAYRDELSAMVIGITGSNGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    V  + +         G  +          L  P  I     LS      V  + +
Sbjct: 115 STKDLVASVLKPYFKVQKTPGNFNNQ--------LGLPLTI-----LSLEEDTKVAVLEM 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +   +  +      TN+G  H+    +++A   AK       L +       
Sbjct: 162 GMSGRGQIEFLSELARPDYAIITNIGEAHLQDLGSREAIAEAKF-EITAGLQQHGKLFYD 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+   +  M+              +     +K   +  +     I     D  F  P+ 
Sbjct: 221 GDEPLLQPFMEAFPQGVSFGFDDNNELTVTDIKATESGSSFMVSGII----DAAFTIPVL 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE QV N L A  + +  G+    + + L+   +   R + +  ++    I   Y    +
Sbjct: 277 GEHQVKNTLAAILVALEAGLSEEQIRKSLKDAALTDMRMQMIQADNGAIFINDAYNAAPS 336

Query: 368 SLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGK 404
           S+   L  IR  T   +  VV G     GD +Q     + K
Sbjct: 337 SMNAALNFIRETTMKDKKWVVLGDMLELGDDEQSYHEALSK 377


>gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
 gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 153/394 (38%), Gaps = 25/394 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV++D+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V++TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +            T                    + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++   LP+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLQAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            +  +   R +VV      G         +G+ A
Sbjct: 346 VLSEMPGFRTMVVGDMAELGAESAACHREVGEAA 379


>gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 153/394 (38%), Gaps = 25/394 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV++D+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V++TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +            T                    + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++   LP+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLQAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            +  +   R +VV      G         +G+ A
Sbjct: 346 VLSEMPGFRTMVVGDMAELGAESAACHREVGEAA 379


>gi|289809140|ref|ZP_06539769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 98

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 4/98 (4%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNK 458
           MG IA + ADI +VTDDNPR+E+P  I  +I+ G+           R EA+  AI     
Sbjct: 1   MGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKD 60

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
            DV+++AGKGHE   IV         D      +LG+I
Sbjct: 61  NDVVLIAGKGHEDYQIVGTQRLDY-SDRVTAARLLGVI 97


>gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
          Length = 460

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 180/474 (37%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+I+   ++   +   +I+ V  DS++++ G +FV I+    DGH ++
Sbjct: 10  MNLKKL-----EEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPII-RMNDGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++              P+ + +      + 
Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ----------IGLPLTILEMER---NT 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G  ++     +      T +G+ H++   +++    AK  + + L   
Sbjct: 164 EFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDD 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + ++ +  N                L       ++  V   +     
Sbjct: 224 GLFLYN-----GDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKI 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+   +    I  
Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIIND 338

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +    +S++  ++ ++ +    + ++V G     G + +     +GK+  + +   + T
Sbjct: 339 AWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFT 398

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  + +  E              N+ E     ++++ K+DV+++  KG
Sbjct: 399 ----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLL--KG 446


>gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
 gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 153/394 (38%), Gaps = 25/394 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +            T                    + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++   LP+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            +  +   R +VV      G         +G++A
Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEVA 379


>gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 452

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/467 (15%), Positives = 161/467 (34%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFINQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +  S+   +  + T+ +GR I++ G     G+  +     +G    +     + T  N  
Sbjct: 338 SPTSMRAAIDTLSTL-TGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN-- 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 --EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTNDLKAHDRVLV--KG 437


>gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
 gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
          Length = 455

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 128/394 (32%), Gaps = 27/394 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +     VS DSR + AG +FVA+ G + DGH ++    A+GA A +V    +      
Sbjct: 20  GADATFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADVKAKGAVAALVEREVA------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P L+V + R  L    +       + ++A+TG+SGK++V   +  I +  GL  
Sbjct: 74  --DVDLPQLLVADCRLALGQLGALNRAAFDKPVVAITGSSGKTTVKEMLASILRTRGLVH 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +             P                   + + AS  G +     G+  
Sbjct: 132 ATRGNLNNDLGAPLTLLEIAPE-------------HSAAVIELGASRIG-EIRYTVGLTQ 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N                        E L +   AI+  DD        RA +  
Sbjct: 178 PQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFAIWSARAGSHK 237

Query: 265 CRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +        H   +           +   G+  D    + GE  V NAL AA    
Sbjct: 238 VVSFARSNPKADFHATDIGRDARGCPSFKLHGAGETVDVQLNVLGEHNVSNALAAAAAAH 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G+    +   L  +  V GR       +    I   Y    +S+   +  +    SGR
Sbjct: 298 AVGLSLNGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDSYNANPSSMCAAIDILAGF-SGR 356

Query: 384 IIVVFGCGGDRDQ---GKRPIMGKIALDLADIAI 414
            ++V G  G+  Q        +G  A    D   
Sbjct: 357 TVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390


>gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
 gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
          Length = 473

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 172/466 (36%), Gaps = 41/466 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI  +  F +       + +S DSR +  G IF  I G+  DGH F  QA A+GA  ++V
Sbjct: 10  LIAAIDGFVIGCMPETFSGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQAYARGAGVLIV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +    +   + + P++VV +  + L   A     +    I+A+TG+ GK++    +
Sbjct: 70  ----AENRLTDMEKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +Q+    G     +   +               P+ LA+           +   E   + 
Sbjct: 126 KQVLATVGKVHANLASLNNCWGV----------PLTLARM-----PVESDYGIFEIGMNH 170

Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            D+ R  +  +       T++   H+ + +  +   +AK  +FE  L +E  A++ AD+ 
Sbjct: 171 ADEIRPLVKLVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEG-LDEEGVALLNADNG 229

Query: 252 YSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++++A   G + +      +      + +    +   + + + G++       PG 
Sbjct: 230 FFSYLVRKAKQCGVKKILSFGEAENSDYQARNIRLRTDFSSMIVHIGGQEKVIKIGAPGR 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHT 365
             V N+L     C  IGID A V   L +  +  GR                I   Y   
Sbjct: 290 HIVQNSLAVIAACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPNGGEFHLIDESYNAN 349

Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD 418
             S+   L           GR I + G   +     ++  R ++  I    A+   +   
Sbjct: 350 PASMRAALDLLATGPVGVGGRRIALLGDMLELGAYSEKLHRDLVKPICRSSANPVFL--- 406

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  + +  ++   +       N  + +      ++  D+L++
Sbjct: 407 --FGEAMKFLAIDLSAYV-KVYYAENIEKILPLIFAEISNGDLLMI 449


>gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pseudoalteromonas atlantica T6c]
 gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 471

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 152/406 (37%), Gaps = 30/406 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  +   E+I   +       +  I  VS+D+RHI +  +F+A+ G   DGH FI QA  
Sbjct: 9   IAQQVQGEIIRSENSI---AEDAIIQGVSTDTRHINSDDLFIALSGPNFDGHKFIEQAQT 65

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A+VVS                  ++V +T+  L L    +  +     +A+TG+SG
Sbjct: 66  SGAIAVVVSRQVETP---------LAQILVSDTKAALGLLGQAVKREVAPKTVAITGSSG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I  R G      G  +               P+ L       +      V
Sbjct: 117 KTTVKEMVAAILSRRGKVLATKGNFN----------NDIGVPLTLL---RLEAQHEFAVV 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +  + +K    +  N    H++   +      A      + L K+  AI
Sbjct: 164 ELGANHLGEIAYTTELVKPDVATIVNAAAAHLEGFGSLLGVARA-KSEIFKGLGKDGLAI 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             AD  +      +  +   +  S   +  +     V  +       +           P
Sbjct: 223 FNADSQFYAFWHGKYEHLRNQRFSTQGEADYYAQDVVLGLSGCADFLMVTPIGKVSITLP 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   V NALV+A L I +G +   V   L+ +  V GR +    + +   +   Y   
Sbjct: 283 LPGIHNVSNALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQVKQLSGQVKVLDDTYNAN 342

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
             S+   +  + +  +GR I+V G     G+R +     +G+ A +
Sbjct: 343 VASVNAAIDLLGSF-AGRKILVLGDMAELGERARFYHQQVGEYAKE 387


>gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora
           bispora DSM 43833]
 gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermobispora bispora
           DSM 43833]
          Length = 455

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 95/461 (20%), Positives = 161/461 (34%), Gaps = 43/461 (9%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I   ++  +   E  +   V  DSR ++ G +F AI G++ DGH F  +A A GA A++ 
Sbjct: 12  ITSGALNGLADPEAVVRGPVVIDSRAVEPGSLFAAIKGSRADGHDFAQEACAAGAVAVLA 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S                 ++V D       L A+ +       ++ VTG+ GK++    +
Sbjct: 72  SRPVDAPA----------VIVRDVVAALADLAAAVVAELPSVTVVGVTGSQGKTTTKDLL 121

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             + +R G +   +G  +        + LT                     + + A + G
Sbjct: 122 AGLTERIGPTVAPVGSHN----NEIGHPLTVLKADE---------RTRFLVLELSARNVG 168

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +         G   N+G  HI     ++A   AK  L E  LP++  A++ ADD Y 
Sbjct: 169 HIAYLTRIAPPRIGVVLNVGAAHIGVFGGREAIAKAKGELVEA-LPEDGVAVLNADDPYV 227

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +E+  R             + +     +      +   T+            L G   V 
Sbjct: 228 REMAGRTRAR-VTWFGRSAEARIRAENETLDERGRASFTLCTPSGSAPVRLRLHGAHMVP 286

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           +AL AA +   +G+    + E L +       R E          I   Y  + +S+   
Sbjct: 287 DALAAAAVAYELGLPVVAIAEELSRAEPRSRWRMEVTDRADGVTVINDAYNASPDSVRAA 346

Query: 373 LKNIRTITSGRI----IVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTDDNPRSEDPEK 427
              +R +  GR     +      G+         G+IA     +  IV  D+        
Sbjct: 347 FAALRAMGDGRRRFAVVAAMRELGEAGAELNEEFGRIAAGSGLEALIVVGDD-------- 398

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               I+ G PG I   +   A R     L   DV++V  KG
Sbjct: 399 -AGPILAGAPGAIHVPDTDAAARELASRLAPGDVVLV--KG 436


>gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
 gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
          Length = 486

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 153/451 (33%), Gaps = 39/451 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I+ G  F AI G++ DGH +   A+A GA  IV+S A       A  R  
Sbjct: 26  ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLAMANGAAMIVISEA----RLPAMGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VVD+    L         +    I+AVTG+ GK++    +++    SG     +  
Sbjct: 82  VPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKTTTKEMLRRTLSPSGKVHASVAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAG 207
            +               P+ LA+       +       E   +  ++ R     ++    
Sbjct: 142 FNNHWGV----------PLTLARM-----PEDTDFGVFEIGMNHPEEIRPLAKMVEPHVA 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   H+   ++      AK  +F+ + P     +   +D +              V
Sbjct: 187 IITTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGHVILNRDNDQFEFLERAALAAGVEHV 246

Query: 268 LSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            S G   K  + L +  A      + +++ G+  +     PG     NAL   G  + + 
Sbjct: 247 HSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVLGTVMLVD 306

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMIL--------KN 375
            D    ++ L  L    GR +        G    +D  Y     S+   +          
Sbjct: 307 ADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALLATSSPDA 366

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEII 433
                +GR I V G   +     + +   +A  L  A I  V    P          + +
Sbjct: 367 NVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGIEYVWLAGP----EMAALRDAL 422

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   + N  E     +  +   DVL+V
Sbjct: 423 PESVYVEYRENTEELAEFVLNSVAPGDVLMV 453


>gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria innocua
           Clip11262]
 gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           innocua Clip11262]
          Length = 457

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 146/377 (38%), Gaps = 26/377 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                 ++ P+++V+NT   L   A++   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKDVPNP------PTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  +++    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 + + ++    +   R L+ G                +    I+    D +   P
Sbjct: 223 -----PHEENLLLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWEPDLEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++ T S    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTITSG 382
             +L+ +LK    + S 
Sbjct: 338 PTALKTVLKTFMHMDSK 354


>gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 155/479 (32%), Gaps = 78/479 (16%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  +  VS D+R +Q G +FVA+   + DGH F+  A+ +GA A +VS           
Sbjct: 20  RDFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASALEKGAAAALVSR------VPEG 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + +N P+L+VD+    L         +    I+AVTG+ GK+S    ++ +   +G +  
Sbjct: 73  LPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKTSTKEMLRTVLAAAGRTHA 132

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                +               P+ LA+  +         + +  S  G        ++  
Sbjct: 133 SEASYNNHWGV----------PLTLARMPAD---TEYGVLELGMSHPGEIAPLSRMVQPH 179

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  T +   H +   + +   + K  +FE LLP+ +  +          +         
Sbjct: 180 VGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGTAVVNGDLAVSPILIAAAKDKGAR 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +           L  +         +       F       G     NAL       A+
Sbjct: 240 VITFGETPRNHHRLTDLRVRAGVTVASGRAWRTPFHMKVASAGRHFAVNALAVIAAADAL 299

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMI-------- 372
           G+D A  L  L +     GR      +            +D A+ +N   M         
Sbjct: 300 GMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDAYNANPTSMAAALDVLAL 359

Query: 373 ---LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +  +  +  GR + V G   +    +  +   +A D A                   
Sbjct: 360 SEPVDGVGRLARGRRVAVLGDMLELGPDEMALHAALAEDHA------------------- 400

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAI-------------------EMLNKQDVLVVAG-KG 468
              +      +  G R++A+  A+                    + +  DV++V G KG
Sbjct: 401 ---LTAADLIVCVGTRMKALHAALPAERAYWLATPEEILPHITRIADAGDVVLVKGSKG 456


>gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
 gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
          Length = 438

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 137/399 (34%), Gaps = 26/399 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
             + ++ + +DSR IQ G +F A+ G + D H F+   +A GA A+VVS         A 
Sbjct: 4   ENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGA- 62

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  L V +T   L   A          +  +TG+SGK++V   +  + +       
Sbjct: 63  -------LKVGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEA 115

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +      ++           P+ L K         +           L   R+ G    
Sbjct: 116 VLATAGNFNNHI-------GLPLTLLKLNEKHRYAVIEMGMNHFGELSL-LTRIAG--PN 165

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N  R H+       A          E L  +  A+I  +DA              
Sbjct: 166 VALVNNALRAHVGCGFDGVADIAKAKSEIYEGLLSDGIALIPCEDANIATFEASTAQLNA 225

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +  + G     IH + +       +  +    +    + P+PG   V+NA+ AA L +A 
Sbjct: 226 Q--TFGVASGDIHAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAA 283

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+  A V + L+    + GR            I   Y    +S+++ +  +  + + R I
Sbjct: 284 GLSLAEVSDGLKNFSNIKGRLNIKQGIKGATLIDDTYNANPDSMKVAIDVLAAMPAPR-I 342

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
            V G  G+  + +   M       A     + A    DN
Sbjct: 343 FVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDN 381


>gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
 gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
          Length = 466

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 141/386 (36%), Gaps = 30/386 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            + + V SDSR ++ G +FVA+ G + D H FI   +A+GA A++VS             
Sbjct: 27  VEFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVVARGAAAVLVSREVDA-------- 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P +V  +TR  L    +    +     +AVTG++GK++V   +  I   +     ++
Sbjct: 79  -GVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEEQRL 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVEASSHGLDQHRLDGIK 203
                +++           P+ + +  +         G+ H        G+ Q  +    
Sbjct: 138 ATGGNLNNDI-------GLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTV---- 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHN 262
                 TN  R+H ++  + +A  +        L           A+   +   + R   
Sbjct: 187 ---AVITNAQREHQEFMVSVEAVAHEHAAAIAALPANGVAVYPLDAESGGAYAPVWRNAA 243

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              R LS G   +      V  +   Q + +   G  FD    L GE  V NAL A    
Sbjct: 244 GARRALSFGTSQRADVHATVTLVDGAQVMQVRAPGHAFDVRLALLGEHNVRNALAAIACA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G+    +   L     V GR +   T      I   Y    +S+   +  +    + 
Sbjct: 304 LAAGVHVPAIQRGLAGFQAVKGRLQVKYTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAP 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA 406
           R++V+   G  GD+       +G  A
Sbjct: 364 RVLVLGDMGEVGDQGPAFHQEIGAYA 389


>gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 458

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 161/472 (34%), Gaps = 44/472 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++        +        QW   ++  V+ D+R ++ G +FV + GN+ DGH FI
Sbjct: 3   MQLSEIAR------MTGAKNETEQWATVEVTSVAFDARELRPGALFVPLAGNR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A + +SA   Q       ++ P+L+V +        A R   K    ++A+
Sbjct: 56  NQARENGAVATLWASARDDQ------PTDFPVLLVKDPLAAYQQLAKRYLLKINPKVVAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++                       +  +  +               LS  ++ 
Sbjct: 110 TGSNGKTTTKDMTAA-------------VLGSQYNIHKTQANFNNEIGVPQTILSMEANT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +     G   H L  I +   +   +  +        +           + L +
Sbjct: 157 EILVIEMGMDRPG-QLHALSEIAMPDVAAITMIGEAHIEFFKTRDKIADAKMEITDFLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+     ++        R          ++  +V A   K Q  ++    D 
Sbjct: 216 DGLLVYDGDEP----LLNERVGDLERETFGSATTNTLYPIQVRAGETKTQFKLNA-WPDV 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G + V NAL A  +     I   ++ + L    V   R E++   +    +  
Sbjct: 271 AFEIPMMGAYNVNNALAAILIGQHYHIKPEVMSKALANFEVTRNRTEWLVGTAGQRMLSD 330

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIV 415
            Y     +   +L+N     T GR I V G     G   +     +  +          +
Sbjct: 331 VYNSNPTAAIEVLRNFSHFETDGRRIAVLGDMLELGTASKKLHESLATVLDPAQIQEVYL 390

Query: 416 --TDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             T+  P  +    I  AE +H      +     E I    E +   D++V+
Sbjct: 391 FGTEIKPLFDKLATIYPAEQLHYFEKTQQP----ELITALAETIQPSDLVVL 438


>gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CNPAF512]
          Length = 479

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 136/388 (35%), Gaps = 34/388 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I +G  F AI G++ DGH +   A+A GA  +VVS A       A  R  
Sbjct: 26  ITGISIDSRSIASGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLT 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++    L         +    I+AVTG+ GK++    ++ +   SG     +  
Sbjct: 82  VPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+              V  +  G  +  +  I+      
Sbjct: 142 FNNHWGV----------PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVAMIRPDVAVI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+   ++ +    AK  +FE L       +   +D ++             + S
Sbjct: 189 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGIENIHS 248

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   K    L +         + +++ G+  +     PG     NAL A G+   +G D
Sbjct: 249 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 308

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD--YAHTSNSLEMILKNIRTITS-- 381
               +  L  L    GR +    +     G    +D  Y     S+   +  +       
Sbjct: 309 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPSG 368

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALD 408
            GR I V G            MG+ A  
Sbjct: 369 RGRRIAVLGDML--------EMGEYAEK 388


>gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
 gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
          Length = 426

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/449 (19%), Positives = 153/449 (34%), Gaps = 57/449 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
              +S+ ++ G +FVA+ G K DGH FI +A+  GA AI+        D          I
Sbjct: 9   FVLNSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAERKTVDSDR---------I 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +V+++   L+  A    G     ++ VTG+SGK++    +  + +         G    
Sbjct: 60  FLVESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGN--- 116

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +     P  I     L+    + +  + + AS  G   H             N+
Sbjct: 117 -----MNTEYGLPLSI-----LNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNV 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++  T++           +   + + A+   DD      ++R      + L  G 
Sbjct: 167 GSAHLEFFGTRERI-METKMEIIKHSKENATAVTLFDDPD----LRREVPCYRKTLFFGK 221

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +G    LK                   F                +AA LC+   +   + 
Sbjct: 222 EGGDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSG-YWNGGQLLNIAASLCVMRALGETVD 280

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389
           +  L  L  VPGRF       +G  I  D Y  +  + +  ++ +      R  VV    
Sbjct: 281 IFDLASLKTVPGRFNVR--EKKGVLIVDDTYNASPEAFQTSIEALLRFPGRRFAVVGAMK 338

Query: 390 CGGDRDQGKRPIMGKIALDL----------------ADIAIVTDDNPRSEDPEKIRAEII 433
             G+R +     +G+    L                +   I+  D     DPEKI  ++ 
Sbjct: 339 ELGERSKEFHEELGERLNVLDGVYIFLSEPEAEWIKSKKIILKSD-----DPEKIAKDLA 393

Query: 434 HGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
             +      + K +R   I   +EM  K+
Sbjct: 394 SRVTEGDVVLFKASRAVRIEKVLEMFEKE 422


>gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 473

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 156/477 (32%), Gaps = 34/477 (7%)

Query: 1   MK----LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           MK    L D   +    ++N     P +  +  +   S DSR ++ G IFVA+ G + DG
Sbjct: 1   MKGVLSLHD-FRRCGELVMNPGEPMPPEVADPVV---SIDSRKVEEGGIFVALPGERTDG 56

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+     +GA  ++VS  +     S         LVV +T   L   A+         
Sbjct: 57  HRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGTLVVQDTVSGLQQLAAIYRESFSIP 116

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ V G++GK++    +  +   +          +               P+ L      
Sbjct: 117 VVGVGGSNGKTTTKEMLGAVLSTAMRVHMSHANLNNH----------LGVPLTLLAMRRE 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +  V +  +  G  +      +   G  TN+G +H+++         A+  LF  
Sbjct: 167 ---TEIAVVEMGINHPGEMELLTSIARPSHGLLTNIGHEHLEFLVNLDGVARAERALFSF 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L        +  DD   ++            +  G                  +  +  E
Sbjct: 224 LDETGGTIFVNNDDPRLRDAATDPQRHILYGMHCGDCCSCRGGALSVLPDGSLRFMLYSE 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D +      G   V NAL AA + I  GI+   V   LE L    G       ++ G 
Sbjct: 284 RGDEEIRLNFTGRHNVLNALAAAAVGIFFGIEPREVRRGLEGLVPREGWKRLEVVSAGGV 343

Query: 357 RIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD 411
            +  D Y    +S+ + +  +  +   GR I V G     GD   G+    GK     + 
Sbjct: 344 TLLNDTYNANPDSMRLAIDALLDMPCQGRRIAVIGDMLELGDAGPGEHEATGKYLAGSSV 403

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I        E    I   +  G        +R +        L + D ++   KG
Sbjct: 404 DMIF----SFGELAGSICF-LNPGRCRGH-FTSREKLFDALSRELEEGDTVLF--KG 452


>gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 448

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 159/452 (35%), Gaps = 49/452 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   ++     +  +  +   S +S++I+   +F+ + G++ DGH F
Sbjct: 1   MNL------WLSEIAKAINGELRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
           I +A+  GA + +    +             P + V++T   L   A  +  K     ++
Sbjct: 55  IKEALQNGAISFISQKDFD--------DLKVPYVKVEDTLLALQSLACYVRRKLNHLKVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +      +    G  +                           
Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPED------------ 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  S+ G         K   G  TN+G  HI+  +++   F AK  + + + 
Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMP 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   +D  +    +         +      +  ++++        Q   S E  
Sbjct: 214 ESGILIINNDNDILNLHKKELKRKVVTIGIENESNFRAQNVQR-------HQNGFSFEVG 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + +         +YN+L A  +   +G+D  L+ E + +   +  RFE +   S    +
Sbjct: 267 GYTYFIESFNFHDIYNSLFAIAVGTILGVDRELIKEAIRQKERLKRRFEVIKKGSI-TIV 325

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
              Y  +++S+   + +I     G+ I+V G     G+  + +   +G+ I     D+ I
Sbjct: 326 DDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384

Query: 415 VTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444
            T      +D   I  E+    G   +    +
Sbjct: 385 CT-----GKDAFYIFDEVKKKDGTKAYFVTKD 411


>gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
          Length = 426

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 154/451 (34%), Gaps = 61/451 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
              +S+ ++ G +FVA+ G + DGH FI +A+  GA A++        D          I
Sbjct: 9   FVLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSDR---------I 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +V+++   L+  A    G     ++ VTG+SGK++    +  + +         G    
Sbjct: 60  FLVESSVDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGN--- 116

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +     P  I     L+    + +  + + AS  G   H             N+
Sbjct: 117 -----MNTEYGLPLSI-----LNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNV 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHNAGCRVLSV 270
           G  H+++  T++     KM + +      +    + D    +EV   ++    G      
Sbjct: 167 GNAHLEFFGTRERIMETKMEIIKYSKENATAVTFFDDSDLRREVPRYRKTLFFGKESGDS 226

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +G + +     A     +   +V+   +     L         + A G          
Sbjct: 227 VLKGWWYYEGSTIAEFEAFESLFTVKLSGYWNGGQLLNIAASLCVMRALGET-------- 278

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV-- 387
           + +  L  L  VPGRF        G  I  D Y  +  + +  ++ +      +  VV  
Sbjct: 279 VDIFDLASLKTVPGRFNVR--EKEGVLIVDDTYNASPEAFQTSIEALLRFPGKKFAVVGA 336

Query: 388 FGCGGDRDQGKRPIMGKIALDL----------------ADIAIVTDDNPRSEDPEKIRAE 431
               G+R +     +GK    L                ++  I+  D     DPE I  +
Sbjct: 337 MKELGERSKEFHEELGKRLNVLDGVYVFLSEPEAEWIKSEKIILKSD-----DPEDIAKD 391

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQ 459
           +   +      + K +R   I   +EM  K+
Sbjct: 392 LAARVTEGDVVLFKASRAVRIERVLEMFEKE 422


>gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
          Length = 300

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 15/290 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   E++I+++++DSR  + G IFVA VG   D H F      QG + +VV+        
Sbjct: 16  LGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQGCKLVVVNKE------ 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGKSSVASFVQQICQRS 140
             ++ +N   +VV +T +  S+ A  L+      ++    TGT+GK+S+A+ +  I ++ 
Sbjct: 70  -QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSIATMIHLIQRKL 128

Query: 141 GLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             +S  +G      +        TTP  + L K +      G   +++E SSHGL   RL
Sbjct: 129 QKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGLVLGRL 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEV 256
            G++     F+NL +DH+D+H T +AY +AK        E L KE   ++  DD++S+ +
Sbjct: 189 RGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDSFSEYL 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             R             +      + +                 +    P 
Sbjct: 249 --RTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPY 296


>gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
 gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
          Length = 447

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 139/363 (38%), Gaps = 24/363 (6%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
             SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA   GA A      
Sbjct: 3   DSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKD 62

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                       + P+++V++T   L   A++   +    ++A+TG++GK++    +  I
Sbjct: 63  VPNP------PMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 116

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +    +  G  +          LT P    +A     ++ +    V  + +   +  
Sbjct: 117 VETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIA- 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN+G  HI+Y  +++    AK+ +   L P            + + +
Sbjct: 175 -----------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETL 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +    N   R L+ G                +    I+    + +   P+ GE  V+N +
Sbjct: 219 LLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVPIIGEHNVFNTM 278

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A      IGI+   +   L+ +     R E++ T S    +   Y  +  +L+ +LK  
Sbjct: 279 AAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTF 338

Query: 377 RTI 379
             +
Sbjct: 339 MHM 341


>gi|225351404|ref|ZP_03742427.1| hypothetical protein BIFPSEUDO_02998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157748|gb|EEG71031.1| hypothetical protein BIFPSEUDO_02998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 422

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 142/420 (33%), Gaps = 20/420 (4%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST--- 152
           ++ RK +SL ++  YG     +  +  T  K    +        +G S  +    S+   
Sbjct: 2   NDARKAMSLLSAAFYGYPQNQLKIIGITGTKGKTTTAYLTQAMLNGCSCGKCALFSSADN 61

Query: 153 --ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   ++ LTTP  +   + +   +  G+ ++ +E SS      R+ G+     +F 
Sbjct: 62  CLDGHTYVESDLTTPESMDAFRMMREAADNGMKYLVMEVSSQAYKVDRVFGLTFDVAAFL 121

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DHI   +          +       +          A          +      ++
Sbjct: 122 NISPDHISPIEHPTFEDYFHCKRQIVKNCRSLVLGTACAHADLIRQDAAIADIPVTTFAL 181

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS- 329
           G            +  + +        +       L G+F   NA  A  +  A+G D  
Sbjct: 182 GEASAADVTAWPESADHSRFAIAVEGEQIGSLSLQLDGDFNYANAAAAIAIAHAVGFDFH 241

Query: 330 ---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--- 383
              A       +   + GR E            VDYAH   S+  +L  +          
Sbjct: 242 ETAAKEALRNMEPVRIAGRMEHFHDTKSNTIAIVDYAHNYASVTALLDYVYQRYGKDDPE 301

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----F 439
           + +V G  G++   +R  + + A +  +  I+T ++   E  E +  +++  +       
Sbjct: 302 VTLVTGSAGNKAYDRRSEIVRAAQNRVNHLILTFEDTDDEPVEHVCQDMLDSVTNPDLDA 361

Query: 440 IEKGNRIEAIRT--AIEMLNKQ--DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
               +R EA+ +  AI+  N     ++++ GKG+E              D  I+  I GL
Sbjct: 362 RIILDRTEAVESTVAIDRKNPNRLHIILIIGKGNERWFKDHGKHIPFEGDDHIVERIFGL 421


>gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 463

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 155/450 (34%), Gaps = 35/450 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
               VS+DSR  QAG IF+ + G + DGH FI +AI +G  A +V++    Q  +     
Sbjct: 26  NFVGVSTDSRTAQAGEIFIPLRGERFDGHDFIDRAIKRGVRA-LVAAEAWWQRQNHQFPK 84

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  I++V  T + L   A     +    ++A+TG+ GK++    +  +            
Sbjct: 85  DLTIVLVPETLRALGDLAHCWRQRFSGPVIAITGSCGKTTTKEMIALVLASRFRV----- 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                +    +N +  P        L+  +      V +  +  G  +      +     
Sbjct: 140 ---LKNELNLNNLIGLP-----QTLLALNTGHETAVVEMGMNHFGEIRRLAQIARPDIAV 191

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   H++   + +    AK  + + L            D                  
Sbjct: 192 VTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIY--NADDQRLRAALHHFKGQTLSF 249

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 +             Q+  I  +GK +     LPG  Q+YNAL AA + +A+G+ 
Sbjct: 250 GFDPGAQIQAGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRHQLYNALAAAAVGLALGLP 309

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVV 387
           +  + + L +   +  R +     S        Y     S+ M L+ + ++   GR +  
Sbjct: 310 AEQISQALGRFAGLKHRSQMQCHTSGIHIFNDCYNANPGSMAMALQTLASLKNQGRAVAA 369

Query: 388 FGCG---GDRDQGKRPIMGKIALDL-ADIAIVTD---DNPRSEDPEKIRAEIIHGIP--G 438
            G     G         +G +A  L  D+ +V     D+ R          +  G+P   
Sbjct: 370 LGDMLELGRETIPAHRQLGALAAQLQVDLLVVWGKFKDSVRQ-------GALAAGMPHSR 422

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +  E            D L+V  KG
Sbjct: 423 IYLVASHAEGADIIRGFCRPGDTLLV--KG 450


>gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 460

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 174/474 (36%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   ++ I + +       G  ++              P+ + +        
Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ----------IGLPLTILEMKRDTE-- 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E       Q R                              AK +L      +
Sbjct: 165 ---FLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLR 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E+   +Y  D     ++ R +           +     L       ++  V   +     
Sbjct: 222 ENGLFLYNGDE---PLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKI 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+        I  
Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFSKVPTEKIQEALQQINITQMRFQFLTAKIGFTIIND 338

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + I+V G     G + +     +GK+  +     + T
Sbjct: 339 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFT 398

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  + +  E      I       N+ E     ++++ K+DV+++  KG
Sbjct: 399 ----YGELAKFVAEEARKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLL--KG 446


>gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 452

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/466 (15%), Positives = 159/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  + IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQVINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437


>gi|49185423|ref|YP_028675.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|65319895|ref|ZP_00392854.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
 gi|227814595|ref|YP_002814604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacillus anthracis str. CDC 684]
 gi|254685159|ref|ZP_05149019.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737610|ref|ZP_05195313.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743209|ref|ZP_05200894.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751925|ref|ZP_05203962.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760445|ref|ZP_05212469.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179350|gb|AAT54726.1| Mur ligase family, catalytic domain, C-terminal [Bacillus anthracis
           str. Sterne]
 gi|227006794|gb|ACP16537.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacillus anthracis str. CDC 684]
          Length = 99

 Score =  125 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEML 456
           MG IA   +D   +T DNPRSEDP+ I  +I  G        +  + +R  AI  AI M 
Sbjct: 1   MGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMA 60

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +  D++++AGKGHET  I+ +       D +  R+ +
Sbjct: 61  SSNDIVLIAGKGHETYQILKDST-IHFDDKEKARQAI 96


>gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 462

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 161/475 (33%), Gaps = 39/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+Q        E+   +     +  W +  +  V+ DSR +QAG +F+ ++G   DGH 
Sbjct: 1   MKMQ------VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I  AI  GA A +        D +  +  + P+++V +T   L         K    ++
Sbjct: 54  YIQSAIEHGAVATLW-----ASDHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +          +  +G    ++    +       P+ L    S   
Sbjct: 109 AVTGSNGKTTTKDMI----------ASVLGTQFNVTKTHANFNNQIGVPVTLL---SMEP 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  V  V +     G        ++      T +G  HI++  T+    +AKM +   L 
Sbjct: 156 NTEVVVVEMGMDHFGELDFLSRLVQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLK 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +             + +RA        + G                 Q    +    
Sbjct: 216 EDGTFIFNG----DEPLLQERAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWP 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  +  P+ G + V NAL A  +     I  A   + +        R E++        +
Sbjct: 272 DNTYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAIL 331

Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              Y     +   +L     +   G+ I V G   +       +   +A +L D A +  
Sbjct: 332 SDVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGDQSDALHMSLASEL-DPATIAS 390

Query: 418 DNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E    +   +      G   + +   + + I      ++  D +++  KG
Sbjct: 391 VYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLL--KG 443


>gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
          Length = 466

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 141/423 (33%), Gaps = 37/423 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR--ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L         E++                I  V  DSR +  G +FV I G + DGH 
Sbjct: 1   MRL------TLSEILAATGAVGDVGERGNPDIEAVRIDSRAVSPGSLFVCIPGERLDGHN 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  +A+++GA A++           A +   TP+L+V +T   L   A     +    ++
Sbjct: 55  FAVEAVSKGAAAVLADRPL------AGLPEGTPVLLVRDTVAALGKLAKAWRERAQARLV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV+G++GK++V      I  + G ++         +    +N++  P        L    
Sbjct: 109 AVSGSAGKTTVKELTAAILAKVGPTA--------KNFKNFNNKIGLPLS-----MLEAGE 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  +  + +  S+ G         +       N+G  H++          A+       L
Sbjct: 156 TDRLWVMELGISAPGEMAPLAAIAEPDVAVIHNVGPAHLEALIDVAGVA-AEKSRLFAAL 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A+   D        K        +   G    +           + +  + ++G 
Sbjct: 215 RPGGVALASMDYPELWAAAKAVRPDVRGMSVKGGSAPYRAKYLGALSEGRGRFFLRLDGL 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + + + PL G     N L AA     +G     +   LE   +   RF        G   
Sbjct: 275 ELEVVTPLTGGHFAENILAAAASARLLGATEEQIATGLESAVMPEQRF---FCRRHGCYT 331

Query: 359 YVD--YAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADI 412
            +D  Y     S+   +        G+ +V+        G + + +   +G+ A      
Sbjct: 332 LIDDTYNANPLSMRRAIATAAEAAQGKPLVLVLGEMREMGAQAEDEHHKLGEEAAASGAK 391

Query: 413 AIV 415
           A+ 
Sbjct: 392 AVF 394


>gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
 gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
          Length = 466

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 91/486 (18%), Positives = 168/486 (34%), Gaps = 52/486 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L+  D   +  Q  +     + R  + VS DSR ++ G +FV + G K+DGH +I
Sbjct: 1   MK--NLLSFDETSIAVQGMLLKNHTKARGFSSVSIDSRTVKDGSLFVPLRGEKQDGHRYI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP------ILVVDNTRKFLSLFASRLYGKHP 114
             A+ +GA        +   D +               + V NT   L   A     K P
Sbjct: 59  RSALEKGAVLFFADEKFLSVDSNKIKTEKLCDEFSASCIQVKNTLAALQAAARFYLKKFP 118

Query: 115 E-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG+SGK++       +  +        G  ++           T  P+ + + 
Sbjct: 119 NLIKVGITGSSGKTTTKEIAGAVLSQKFSVVMNKGNLNSE----------TGLPLSVFEV 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   V    +  +  G  +     +    G  TN+G  HI    +QQA    K ++
Sbjct: 169 RDE---HEVGIFELGMNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAIAEEKKQI 225

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F            +  D    + ++                    LK +  I +K     
Sbjct: 226 FSFFDKDCM---GFVPDCPFTDFLQAVPLGKVVCYENTT------LKNIKKIESKGMYGS 276

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++  KD +  FPL G   + NA     L   +G+    +   LE +  + GR +F+  + 
Sbjct: 277 TIFYKDEEICFPLAGNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPIFGRSQFMQGDV 336

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG----GDRDQGKRPIMGKIALD 408
                   Y    +S+   L         G+   V G       +     + I  + A  
Sbjct: 337 DCLFDC--YNANPDSMSAALAVFSETKVQGKKAAVLGSMLELGKESAAAHKKICAQAAAS 394

Query: 409 LADIAIV----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLV 463
             D   +      D+ ++ +          G   F    + ++A+  A+ E L++ D ++
Sbjct: 395 DIDFIYLFGKEIGDSGKNINWN--------GKTVFYFDESEMDALGKALDENLHRGDFVL 446

Query: 464 V-AGKG 468
           + A +G
Sbjct: 447 LKASRG 452


>gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate
           [Bacillus cereus Q1]
 gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus Q1]
          Length = 451

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/474 (15%), Positives = 181/474 (38%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+I+   ++   +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 1   MNLKKL-----EEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++              P+ + +      + 
Sbjct: 108 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ----------IGLPLTILEMER---NT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G  ++     +      T +G+ H++   +++    AK  + + L   
Sbjct: 155 EFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + ++ +  N                L       ++  V   +     
Sbjct: 215 GLFLYN-----GDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKI 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+   +    I  
Sbjct: 270 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIIND 329

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +    +S++  ++ ++ +    + ++V G     G + +     +GK+  + +   + T
Sbjct: 330 AWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFT 389

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  + +  E              N+ E     ++++ K+DV+++  KG
Sbjct: 390 ----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLL--KG 437


>gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
 gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
          Length = 452

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 86/429 (20%), Positives = 154/429 (35%), Gaps = 31/429 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L ++L    +   +  IN VS+D+R I+ G +FVA+VG + D H F   A+ 
Sbjct: 1   MISLMLSQLADELDA-QLVGNDAAINAVSTDTRTIEPGALFVALVGERFDAHDFALNAVE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS A   Q         TP L+V +T+  L      ++       +A+TG+ G
Sbjct: 60  AGATALLVSRALDTQ---------TPQLLVKDTKAALGQLGKFVHQVCQTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I    G   F  G  +           +TP                   +
Sbjct: 111 KTTVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPE-------------DDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   +      A      + L   S AI
Sbjct: 158 ELGANHIGEIAYTTQLVKPDVALVNNVAAAHLEGFGSMDGVKQA-KGEIYQGLAPGSAAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLF 304
           +  D    +   +   +   +  SV          K+   ++ +    +      F+   
Sbjct: 217 VNLDSNGGEHWQEVLADKQVKTFSVLDSTADYFAHKITMNNSGEASFELLSPMGGFEVKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  V NAL A  L   +G    +V   L  L  V GR E +    +   I   Y  
Sbjct: 277 GIIGQHNVANALAATALAFELGASIEMVQSGLRHLAKVKGRVESIALTEKITLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +++     + +    R +++      GD        +G+ A       ++T      
Sbjct: 337 SVPAMKAAADLLSSFKGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLT----YG 392

Query: 423 EDPEKIRAE 431
            D   I  +
Sbjct: 393 ADARAISQQ 401


>gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
          Length = 460

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/474 (15%), Positives = 181/474 (38%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+I+   ++   +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++              P+ + +      + 
Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ----------IGLPLTILEMER---NT 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G  ++     +      T +G+ H++   +++    AK  + + L   
Sbjct: 164 EFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDD 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + ++ +  N                L       ++  V   +     
Sbjct: 224 GLFLYN-----GDEPLLSQHINTLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKI 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+   +    I  
Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIIND 338

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +    +S++  ++ ++ +    + ++V G     G + +     +GK+  + +   + T
Sbjct: 339 AWNANPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEDSIQYVFT 398

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  + +  E              N+ E     ++++ K+DV+++  KG
Sbjct: 399 ----YGELAKIVAEEARKNYHAGKVQSFDNKAEIAEEVLKVVTKKDVVLL--KG 446


>gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella kingae ATCC 23330]
          Length = 454

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 140/410 (34%), Gaps = 26/410 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I      P     + IN + +DSR  Q+G +FVA++G   D H F+
Sbjct: 1   MKTLDL------NFICTALNLPQPENNQPINRIITDSRQAQSGDLFVALIGENHDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              +A+GA A+V    +               L VD+T   L   A          +  +
Sbjct: 55  ADVLAKGALALVSRDDFVGVSG---------CLKVDDTLIALQKLAKAWRQVINPFVFGI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  + +    +   +      ++           P+ L    +   S 
Sbjct: 106 TGSSGKTTVKEMLTTVLREKFGADAVLATAGNFNNHI-------GLPLTLL---NLRESH 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  +  G         +       N  R HI                  + + +
Sbjct: 156 RYAVIEMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQGIQQ 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+  DDA          + G +  + G+    IH + V       +  +    +  
Sbjct: 216 DGLAILPIDDANLPIFQAACKDLGLQTQTFGFAQGDIHAENVKLQPLVSEFDLVQGSERV 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G+  V NA  AA L +A G+    +   L     + GR +          +  
Sbjct: 276 HITLPVAGKHNVSNACAAATLALAGGVKFTEIARGLANFANIKGRLQVKHGIKNSTILDD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            Y    +S++  L  +  + +   + V G  G+  + + P M +     A
Sbjct: 336 TYNANPDSMKAALDVLAKMPAP-HVFVMGDMGELGENEAPKMHEEIGIYA 384


>gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 457

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/474 (16%), Positives = 161/474 (33%), Gaps = 46/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  ++                  +++ V+ DSR ++  ++FVAI G + DGH FI
Sbjct: 1   MK--NMSLQEIATACGGTYFGDSTKLSLEVSGVAIDSRKVEKDFLFVAIKGARVDGHDFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ +  GA   +         +S         ++V +  + L   A          ++ +
Sbjct: 59  PQVMENGALCALSEKDLGDVPYS--------YILVKSCEQALKDLAEYYRLALDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + ++        G          +N +  P  I+  +    ++  
Sbjct: 111 TGSVGKTSTKEMIASVLEQKYSVLKTEGN--------FNNEIGLPLTIFNIREEHEVAVL 162

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +     E      + HRL  + +      TN+G  H++    +     AK  +F+ +  
Sbjct: 163 EMGINEFE------EMHRLAKVARPDICVITNIGFCHLENLIDRDGVLRAKTEMFDFMRD 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +    D      ++           +  +  +                + +    
Sbjct: 217 GAQIIL--NGDDDKLITVQNVKGIIPVFFGLTERHDYYATDVHSLGLKGTSCILHLPNGT 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +    LPG   VYNAL  A +  ++G+ +  + + +E L  V GR   + T+       
Sbjct: 275 VNANIHLPGAHMVYNALAGACVGYSLGLTNEEIQKGIESLLPVSGRNNLIETDDFLIIDD 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             Y     S++  L  +     GR + + G     G+ ++     +G  A       I  
Sbjct: 335 C-YNANPVSMKASLDVLSN-ALGRKVAILGDMGELGEDEKALHYGVGVYAAKKETDLICC 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVV 464
                      +  E ++G          +    + E +     ++ K D ++V
Sbjct: 393 --------IGTLAQEFVNGANSVTSKSETLYFATKEEFLSQMHSIVKKGDTILV 438


>gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
          Length = 477

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 91/472 (19%), Positives = 156/472 (33%), Gaps = 40/472 (8%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +      L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  
Sbjct: 3   LLWTSEALVTAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKA 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VV+         +  R   PI+VV++    L         +    I+AVTG++GK
Sbjct: 63  GAGVLVVAEG----KLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    ++ +    G         +               P+ LA+           +  
Sbjct: 119 TTTKEALRHVLSAVGKVHASAQSFNNHWGV----------PLTLARM-----PVDCDYAV 163

Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            E   +  D+ R  +  ++      T +   H+ + +       AK  +FE + P    A
Sbjct: 164 FEIGMNHPDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEPDG--A 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD 301
            I   D    +++ +  +A       G+         L K     +   +   + G D  
Sbjct: 222 AILNRDDARFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMI 281

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV 360
                PG   V N L   G    +  D   V+  L  L    GR +        G    +
Sbjct: 282 ARIGAPGRHMVQNVLAVLGAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLI 341

Query: 361 DYAHTSNSLEMIL-----KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           D ++ +N   M               GR I V G   +       +       LAD+ + 
Sbjct: 342 DESYNANPASMAAAMALLNTTPVAGEGRRIAVLGDMLELGDHSAKLHAA----LADLIVG 397

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT---AIEMLNKQDVLVV 464
           T          +    +   +P  I+   R  A       +  L   DV+++
Sbjct: 398 TGTQTVFLGGPE-MKALAEALPAEIQTEYRAGAAELKPVLLAALKPGDVVMI 448


>gi|229818496|ref|ZP_04448777.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
 gi|229784144|gb|EEP20258.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
          Length = 491

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 166/477 (34%), Gaps = 43/477 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVG----NKEDG 56
           K   L+ +        L +  +      I  ++ D+R +  G  +FV   G       DG
Sbjct: 33  KRHHLLREIITPDRWTLDVADLPGANTPIPTITYDTRKVSQGTMLFV--KGRFKPEFLDG 90

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
                    +G  A V    +S +  +         ++V++  K +SL ++  YG  P++
Sbjct: 91  ID------TKGLYAYVAEEDHSDRTHAIG-------VIVNDVHKAMSLLSASFYG-LPQH 136

Query: 117 ILAVTGTSGK------SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            L V G +G       + +A  +     +   + F              ++LTTP  +  
Sbjct: 137 ELTVVGITGTKGKTTTAFLAQAILNEYSQGRCALFSSVNLCLDGHTMLPSKLTTPESLDS 196

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFN 228
            + +      G+ ++ +E SS     +R+ G+     +F N+  DHI    H T + Y  
Sbjct: 197 FRMMRQAVDNGMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISPIEHPTLEDYLY 256

Query: 229 AKMRLFEELLP-----KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            K ++           +     +  +DA   +V          +   G   +        
Sbjct: 257 CKRQIIANSRTLVLGSECRHIGLLREDAAVHQVPVSEFGVLDAMPRDGADDQTCAWPADG 316

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                +      +  +F         ++   A +A      +  D   +     +   VP
Sbjct: 317 THRAYRMRLDGNDLGEFSLDLDGDFNYKNALAAIAIAHAAGVPADCEAL--RALEHTKVP 374

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRP 400
           GR              VDYAH  +S+  +L  + T     + RI +V G  G++   +R 
Sbjct: 375 GRMMQYRDERTSTIAIVDYAHNYDSVVKLLDYVSTRYGERNPRITLVAGSAGNKAIDRRE 434

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGNRIEAIRTAI 453
            + K A D     + T ++  +E  E I  ++   +           +R +AI +A+
Sbjct: 435 GIVKAAQDRISRFVFTAEDTDTEPYEDICRDMADHVTNSHVTSDTIIDRTQAIASAL 491


>gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 460

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/474 (16%), Positives = 171/474 (36%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E++N   +        +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVVNGEGLQESFHL-IEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++              P+ + +        
Sbjct: 117 TGSNGKTTVKDIIGSILSSTYKVHKTKGNFNSQ----------IGLPLTILEMER----- 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E       Q R                              AK +L      +
Sbjct: 162 NTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDWLR 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E+   +Y  D     ++ R +           +     L       ++  V   +     
Sbjct: 222 ENGLFLYNGDE---PLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHSKI 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     +    + E L+++++   RF+F+   +    I  
Sbjct: 279 QYDVPLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITKMRFQFLTAKTGFTIIND 338

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + ++V G     G + +     +GK+  + +   + T
Sbjct: 339 AWNASPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKAETYHREIGKMLNEESIQYVFT 398

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  + +  E              N+ E     ++++ K+DV+++  KG
Sbjct: 399 ----YGELAKIVAEEARKNYHTGKIKSFDNKAEIAEEVLKVITKKDVVLL--KG 446


>gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
 gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
          Length = 492

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/487 (17%), Positives = 160/487 (32%), Gaps = 50/487 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRE---RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     EL   +S   +   +        V++DSR + AG +FVA  G   DGH F+PQ
Sbjct: 1   MIPITAAELARAVSGRLVSVADPDGVSATSVTTDSREVTAGTLFVAKPGETTDGHAFVPQ 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENIL 118
           A A GA   +          +       P +VV +  + +   AS +  +    HP  ++
Sbjct: 61  AAAAGAVLNLTEREVLDDTGAPY-----PSVVVADVVQAMGALASHVLQRLRAAHPVTVV 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG+ GK++    +  I    G +             + +  +  P  ++ A+  +   
Sbjct: 116 AVTGSVGKTTTKDLLHGIFAAEGPTV--------APRNSYNGEVGVPLTVFTAEQDTE-- 165

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 V + A+  G  ++  + ++   G+   +G  H       +    A      E L
Sbjct: 166 ---FFVVEMGATHIGNIRYLCEMVRPDVGAVLCVGSAHAGEFGGVENIARA-KGEMVECL 221

Query: 239 PKESPAIIYADDAYSKEVMKRA------HNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQV 291
             E  A++  DDA  + + +R          G R    G++   +  + V    +     
Sbjct: 222 APEGTAVLNDDDARVRPMRERTTARVVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCPSF 281

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--VVPGRFEFV 349
           T+         +            L+AA         +   +    +        R E  
Sbjct: 282 TLHFPDGSAFPVHSRLIGVHHVTNLLAAASVAWAAGVAPERIAAGLEGTGARSRWRMERT 341

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNI-------RTITSGRIIVVFGCG---GDRDQGKR 399
             +     +   Y     S++  L+ +             R I V G     GD      
Sbjct: 342 ERSDGVTVVNDAYNANPQSMKAALQTLAQLGRGDAEHPPRRTIAVIGGMHELGDETISAH 401

Query: 400 PIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLN 457
             +G++ + L     +   D  R   P    A +        +   +   A      +L 
Sbjct: 402 ADLGQLLVRLNISHVVAVGDLAR---PVYTAATLEGSWGEEALWVPDAEAAEEHLRAVLR 458

Query: 458 KQDVLVV 464
             D++++
Sbjct: 459 PGDIVLL 465


>gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp.
           1-1C]
          Length = 472

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 163/448 (36%), Gaps = 41/448 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DSR + AG IF  I G+  DGH F   A AQGA  +VV+     +    T     P
Sbjct: 28  GVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHAYAQGAGVLVVAQNRLDEMKKITA----P 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++VV +  + L   A     +    I+A+TG+ GK++    ++Q  +  G     +   +
Sbjct: 84  LIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKTTTKEALKQALETVGKVHANLASLN 143

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGSF 209
                          P+ LA+           +   E   +  ++ R  +  +       
Sbjct: 144 NCWGV----------PLTLARM-----PIDSDYGIFEIGMNHKNEIRPLVKLVCPHVVLI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+++ +  +   +AK  +FE  L K   A++ ADD +   ++K+A   G + + 
Sbjct: 189 TRIAAGHMEFFKDLEEIADAKAEIFEG-LDKNGIALLNADDHFFSYLLKKAKQCGVKEIR 247

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      +K+V  + N   + +    KD       PG+  V N L     C  +  
Sbjct: 248 SFGRSNSADYQVKEVRLLENCSCMVVHFYQKDMMIKIGAPGQHMVQNGLSVLAACDTVCA 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEMILK---NIRTIT 380
           D A +   L +  +  GR                I   Y     S+   L          
Sbjct: 308 DLAHITLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMLTALDLLATGPIGV 367

Query: 381 SGRIIVVFGCG---GDRDQG-KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            G+ I + G     GD  +   R ++  I +  AD+  +       ++   +  ++   +
Sbjct: 368 GGKRIAILGDMLELGDHSKKLHRDLLEPIRVSGADLVFLV-----GKEMGVLARDLSAYV 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  N  E        ++  D++++
Sbjct: 423 T-VYHAENIEEIFPLVFSEISNGDLIMI 449


>gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
 gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
          Length = 452

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 152/394 (38%), Gaps = 25/394 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  ++    Q  +  I+EV+SD+R + AG +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAIAHGERQGSDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +          + P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RPLAC---------DLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +            T                    + + A+  G 
Sbjct: 120 AILSQCGNTLYTAGNLNNDIGVPMTLLRLTKE-------------HQYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  ++   LP+   AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            V    +  + T+     + D L PLPG   + N
Sbjct: 226 NWQAVIGDRKVWRFSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L +A+G D A V   L +L  VPGR   +        +   Y     S+   ++
Sbjct: 286 ALAATSLAMAVGADLAAVKAGLAQLKAVPGRLFPIRLTESQLLLDDSYNANVGSMTAAVQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            +  +   R +VV      G         +G+ A
Sbjct: 346 VLSEMPGFRAMVVGDMAELGAESAACHREVGEAA 379


>gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Mississippi]
          Length = 456

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 162/445 (36%), Gaps = 38/445 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S D+R ++ G IFVAI G   DGH F+P+A ++GA A VV       + S       P+
Sbjct: 20  ISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD------EVSVPTADCGPL 73

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T + L   A+         ++A+TG++GK++    +     + G   +     + 
Sbjct: 74  VAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALSKYGKVYYNEANYNN 133

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +          T                    + +  +S G         +      TN+
Sbjct: 134 LIGMPLYAANLTEDA-------------EFVVLEMGMNSPGEVDALSRIARPDVAVITNV 180

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++ ++ +    AK+ +F   +   + A++  D  Y  ++   A +   R++S G 
Sbjct: 181 GPAHLEFFESVEGVLAAKLEVFNH-VKDGAIAVLNFDSEYYAKMRAVAESYCARIISFG- 238

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G    ++          VT    G++  +          Y+  + A +  A  ID    
Sbjct: 239 VGAGADVQIFRREEPSNPVTFRCFGEELQYNLKSGARHLAYSVAITAAVGRAFSIDLTQA 298

Query: 333 LEHLEKLHVVP-GRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG---RIIVV 387
              +E+   +   +        R   +  D Y     S+   ++N+  +      R + +
Sbjct: 299 RGAMEEFVPLEGSKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNLNHARVLRRVAI 358

Query: 388 FGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            G   +   G     R ++ +I     D+   T  +      + +   +  G        
Sbjct: 359 LGDMLELGSGSCHYHRGLLERIMHSNIDVVY-TVGSHMLALYDVLPQHLRGG-----HFA 412

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  EA+     ++   D ++V  KG
Sbjct: 413 DHGEALAHLERIIKPGDGVLV--KG 435


>gi|309798583|ref|ZP_07692858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
 gi|308117819|gb|EFO55220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
          Length = 189

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 5/191 (2%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G F   NA+ A   C+ +G     + + +     VPGR E +   + G ++++DYAH 
Sbjct: 1   MIGHFNQENAIAAGLACLRLGASLEDIKKGIAS-TRVPGRMEVLTQKN-GAKVFIDYAHN 58

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSED 424
            +SL+ ++  + T  +G+I +V G  G++ + +R   G +     +I   +T D+P  ED
Sbjct: 59  GDSLKKLISVVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYED 118

Query: 425 PEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKM 482
           P  I  EI   I   +E   +R +AI+ A+ + +++ D +++AGKG +   I+   ++  
Sbjct: 119 PMAIADEISSYIHHPVEKIADREQAIKAAMSVTDQELDAVIIAGKGADCYQIIQGKKEDY 178

Query: 483 SVDCDIIREIL 493
             D  I    L
Sbjct: 179 PGDAAIAERYL 189


>gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
          Length = 447

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/468 (16%), Positives = 164/468 (35%), Gaps = 44/468 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++++I     +L++          + ++N  + D+R IQ G +++ +VG K DGH +I
Sbjct: 1   MFIREIIEATNGKLLSG-------HLDDQVNGFTQDTRVIQPGNLYIPLVGIK-DGHDYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA  +GA A + +        +        +++V++T K L   A  +       ++ +
Sbjct: 53  PQAFNKGAAATLTNRPIEDDSHN--------VILVEDTMKALGDLARYVRVHSHAKVIGI 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +  +   +    G  +                + + +       +
Sbjct: 105 TGSAGKTSTKDMIASVISQQYTTLKTQGNFNNNIGLPLTILRYNGEEVMVIEMGMNHLEE 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +                    + TN+G  HI    +++    AKM +   +   
Sbjct: 165 IDYLTKIALPDIA--------------AITNIGTAHIGELGSRENILQAKMEIVHGMNHG 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                   D      +                    +    +    +     + V G+D+
Sbjct: 211 TLVVNNDND-----LLSTVHPEGISLKTIGIESDADLKATDIILNEDMSSFRVKVNGQDY 265

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   ++NAL+A  + + + I     +  +E   +   R + +  +     I  
Sbjct: 266 AVRVYVPGVHFIFNALIAIQIGLLLDIPMEKCIRGIETFELTKNRNDILTLDRHIRVIDG 325

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y    +S++  +  +   T  R I V G     GD ++     +G   L      I+T 
Sbjct: 326 TYNANLDSMKSSIDVLSGYTD-RKIAVLGDMLELGDYEETLHRAVGAHLLKKNIDLILTV 384

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV 464
                     I  E+    PG     +   ++   ++  L + DV++V
Sbjct: 385 ----GPAARYISDEVNKAKPGIAYHFDDNASLSAYLQECLEENDVVLV 428


>gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum EA 2018]
          Length = 455

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 174/464 (37%), Gaps = 37/464 (7%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L + +  + +N   +     ++   N+VS D+R +  G IF+AI G   +G+ FI  A+
Sbjct: 3   NLTFNEIAKAVNG-KVILRGSKDV-FNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA   +V   +  +D   + + +  IL+V++T+K L   A          ++A+TG++
Sbjct: 61  QKGAALCIVDEIHFEKD---SFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGST 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S       + +         G          +N +  P             S  V  
Sbjct: 118 GKTSTKDITASVLRSKFRVFKTSGN--------FNNEIGLP-----LMIFKLDKSYEVAV 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  +      +     +      TN+G  HI+  ++++    AK+ + +         
Sbjct: 165 LEMGMNHFNEIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLI 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   +D     + K    +   + +   +   ++ + +C      +  +  E      + 
Sbjct: 225 VNGDND----LLKKHEFKSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQGE----KLVL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  + NA+++    + +G+    + + L+ L +   R + V        +   Y  
Sbjct: 277 NMPGKHNIENAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLDIV-NGENIVIVDDSYNA 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNP 420
           + +S+   +   + +   R I V G     G++       +G  A  +  D  +V     
Sbjct: 336 SPDSMIAAIDVTKNLKGNRRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVG--- 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  K   +       F E     E ++     + K D+ ++
Sbjct: 393 ---EFSKAYLDGYKDKENFSEFETNEELLKFVKTDIRKGDIFLI 433


>gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
 gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
          Length = 427

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 139/384 (36%), Gaps = 25/384 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R + AG +FVA+ G + DGH F             V++       S  +    P 
Sbjct: 1   MTIDTRKVTAGCLFVALKGERFDGHDFAED---------AVAAGAGALLVSKRLLVGAPQ 51

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +TR  L  FA+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G  + 
Sbjct: 52  LVVKDTRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNN 111

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      +P                   + + A+  G   +  D  +  +    NL
Sbjct: 112 DIGVPLTLLRLSPE-------------HDFAVIELGANHVGEIAYTTDLSRPESALVNNL 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++   +      AK  +F  L    +  I    + +        +         G 
Sbjct: 159 AAAHLEGFGSLAGVAKAKGEIFAGLPANGTAIINADSNDWPHWQEMLHNKRVWYFSPRGA 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +    +   V         T+           PLPG   + NAL A  L +++G D A V
Sbjct: 219 EDIDFYASDVRITPQATHFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAV 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
            + L +L  VPGR   +  ++    +   Y     S+    + +  +   R++VV     
Sbjct: 279 RQGLAQLQAVPGRLFPIQLSAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVLVVGDMAE 338

Query: 391 GGDRDQGKRPIMGKIALD-LADIA 413
            GD        +G+ A     D  
Sbjct: 339 LGDTAVDCHRQVGEAARQAGVDKV 362


>gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 485

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 160/488 (32%), Gaps = 64/488 (13%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +      L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  
Sbjct: 3   LLWTSEALVAAMDGRPLGPMPDGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKA 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VV+         +  R   PI+VV++    L         +    I+AVTG++GK
Sbjct: 63  GAGVLVVAEG----KLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    ++ + Q  G         +               P+ LA+           +  
Sbjct: 119 TTTKEALRHVLQAVGKVHASAQSFNNHWGV----------PLTLARMPDD-----CDYAV 163

Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            E   +  D+ R  +  ++      T +   H+ + +       AK  +FE L P+   A
Sbjct: 164 FEIGMNHPDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEG--A 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD 301
            +   D    +++ +  +A       G+         L K     +   +T  + G +  
Sbjct: 222 AVLNRDDARFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVT 281

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----- 356
                PG   V N L   G    +G D   V   L  L    GR +       GG     
Sbjct: 282 ARIGAPGRHMVQNVLAVLGAAHLVGADLDKVASALADLSAERGRGKRHVLRHPGGSTSSH 341

Query: 357 ----RIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQGKRPIMGKIAL 407
                  +D ++ +N   M         +     GR I V G   +       +      
Sbjct: 342 PGGLITLIDESYNANPASMAAAMALLNATPVTGEGRRIAVLGDMLELGDHSTKLHAA--- 398

Query: 408 DLADIAIVTDDNPRS----------ED-PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            LAD+ + T                E  P  I+ E   G+                +  L
Sbjct: 399 -LADLIVGTGTQTVFLGGPEMRALAEALPADIKTEYRAGVEELKPVL---------LAAL 448

Query: 457 NKQDVLVV 464
              DV+++
Sbjct: 449 KPGDVVMI 456


>gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 468

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 157/475 (33%), Gaps = 39/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+Q        E+   +     +  W +  +  V+ DSR +QAG +F+ ++G   DGH 
Sbjct: 7   MKMQ------VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQ 59

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I  AI  GA A +        D +  +  + P+++V +T   L         K    ++
Sbjct: 60  YIQSAIEHGAVATLW-----ASDHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +       +      +            T   +     +  + 
Sbjct: 115 AVTGSNGKTTTKDMIASVLSTQFNVTKTHANFNNQIGVPV-----TLLSMEPNTEVVVVE 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   ++  S          ++      T +G  HI++  T+    +AKM +   L 
Sbjct: 170 MGMDHFGELDFLSRL--------VQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLK 221

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +             + +RA        + G                 Q    +    
Sbjct: 222 EDGTFIFNG----DEPLLQERAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWP 277

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  +  P+ G + V NAL A  +     I  A   + +        R E++        +
Sbjct: 278 DNTYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAIL 337

Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              Y     +   +L     +   G+ I V G   +  +    +   +A +L D A +  
Sbjct: 338 SDVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGEQSDALHMSLASEL-DPATIAS 396

Query: 418 DNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E    +   +      G   + +   + + I      ++  D +++  KG
Sbjct: 397 VYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLL--KG 449


>gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
          Length = 452

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 147/409 (35%), Gaps = 29/409 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++L      ++        +   +  + +VS+DSR   +  +F+A+ G K +GH F+ +
Sbjct: 2   LKELKLSQIADICGGT----LFGEDACVIDVSTDSRDDLSNKLFLALRGEKFNGHSFVDK 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI QGA  ++V     +           P +VV NT       A  L       + ++TG
Sbjct: 58  AIDQGASGVLVDVDSGVSLE--------PRIVVHNTLLAYHDIARFLRDAFQGRVFSITG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+SV  ++ Q  +  G         +      +     T   I      + + +   
Sbjct: 110 SNGKTSVKDWLAQSLEDFGCVLKTQSNFNNHIGVPK-----TLIQIENNHQFAVVEAGTS 164

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +   S  +    +          TN    H++   + +A    K  L         
Sbjct: 165 FPGEISILSKTIHADVV--------IVTNASGSHLEGFGSTKAIAEEKGDLITYSSLYSK 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + + DD + +              S+      +++  +    ++    +    +    
Sbjct: 217 VILNF-DDPFFEYWKGLTGKREFFSFSLSDASADLYVSDLDLGASESSCIVHFRDQSSLV 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P PG+ QVYNAL   G  + + +     L  + K   V GR EF  T +    I   Y
Sbjct: 276 TIPAPGKHQVYNALAVIGALMHVDVHFIDALNKVSKAVQVKGRMEFGLTKNNALLIDDCY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALD 408
             +  S+E  +  +      +  +V    G  GD+++     +GK A +
Sbjct: 336 NASPTSVEAAIDVLSMQKPIKKWLVLGALGELGDQEESIHRGLGKYAAE 384


>gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
 gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
          Length = 455

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 135/413 (32%), Gaps = 27/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++       +  L        +     VS DSR + AG +FVA+ G + DGH ++    A
Sbjct: 1   MLKPMSLSQLVPLLNGQQIGADAAFTGVSIDSRSVSAGQLFVALTGPRFDGHDYLADVKA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A +V    +          + P L V + R  L    +     + + ++A+TG+SG
Sbjct: 61  KGAVAALVEREVA--------DVDLPQLRVADCRLALGQLGALNRAAYDKPVVAITGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I +  GL     G  +              +P+ L +  +         +
Sbjct: 113 KTTVKEMLASILRTRGLVHATRGNLN----------NDLGAPLTLLEIAAE---HSAAVI 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS  G +     G+        N                        E L +   AI
Sbjct: 160 ELGASRIG-EIRYTVGLTRPQVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAI 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLF 304
           +  DD        RA        +        H   +           +   G+      
Sbjct: 219 LNLDDKAFATWKARAGAHKVISFARSDARADFHASAIGRDARGCPSFQLHGAGEVAQVQL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + GE  V NAL AA    A+G+  A +   L  +  V GR       S    I   Y  
Sbjct: 279 NVLGEHNVSNALAAAAAAHAVGLSLAGIAAGLAAVQPVKGRTVAQIAPSGVRVIDDSYNA 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAI 414
              S+   +  +    SGR ++V G  G+  Q        +G  A    D   
Sbjct: 339 NPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390


>gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 460

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 172/472 (36%), Gaps = 38/472 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L      E++N        +   ++  V  DS+ I  G +FV I+  K DGH ++ +
Sbjct: 7   LIQLQLNKLEEIVNGEG-LQESFHYIEMQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKE 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA A +   +Y             PI+ VD+T   L   A          ++ +TG
Sbjct: 65  AMEKGAAASLWKKSYGDP------PKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITG 118

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+ V   +  I   +       G  ++              P+ + +          
Sbjct: 119 SNGKTMVKDIISTILSTTYRVHKTKGNLNSQ----------IGLPLTILEMKQD---TEF 165

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  ++     +      T +G+ H++   +++    AK  + + L     
Sbjct: 166 LILEMGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGL 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                      + ++ +  N                L       ++  V   +      +
Sbjct: 226 FLYN-----GDEPLLSQNINMLGIEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQY 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G+  ++N +V   +     +    + E L+++++   RF+F+   +    I   +
Sbjct: 281 DVPLHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAW 340

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
             + +S++  ++ ++ +    + I+V G     G + +     +G++  + +   + T  
Sbjct: 341 NASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFT-- 398

Query: 419 NPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E  + +  E              N+ +     ++++ K+DV+++  KG
Sbjct: 399 --YGELAKIVAEEARKNYHTGKIKSFDNKAKIAEEVLKVITKKDVVLL--KG 446


>gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/484 (16%), Positives = 161/484 (33%), Gaps = 50/484 (10%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L+      L++          ++ +  +S DSR ++   +FV IVG + D H F+ QA
Sbjct: 7   KELLEATGGNLLHG-------QEDQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNT-------------PILVVDNTRKFLSLFASRLY 110
           IA GA  +  S  +  +D  A +R                  + V +T+K L    S   
Sbjct: 60  IASGAAVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCR 119

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ +TG+ GK++    + +            G +++              PI +
Sbjct: 120 KSLSLPLVGITGSVGKTTTREMIAEALSAGFKVYKTPGNSNSQVGV----------PITI 169

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A+      S  +  + +  S  G  +      ++     TN+G  HI+   +Q+     K
Sbjct: 170 AEI---PQSAEIGVIELGMSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEK 226

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + + E + P E    +  DD     V+ +                    + +        
Sbjct: 227 LHIQEGM-PPEGILFLNGDDPLLASVVPKEGRKKVLYGLGRDCD--YRAEDLHLEEGYPV 283

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T             + G   V NA+ A  +    G+        L +     GR +   
Sbjct: 284 FTAVHGDCRVRVRLKVMGSHMVSNAMAALAVADTYGLSMEKAALALGQFKGYKGRQQIFE 343

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIAL 407
                  I   Y  +  S++  L+ + ++   R I V     +           +G    
Sbjct: 344 WGGV-TVIDDSYNASPVSMKAGLEVLDSVKGERKIAVLADMKELGPDTERFHAEIGAYIG 402

Query: 408 DLA-DIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   D+ ++       E    I +  +        IE  +  +A +   E + + D ++ 
Sbjct: 403 EHPLDMVLL-----LGELAACIGSGMDAARAATPHIEIDSLAQAEKWLDENIREGDCILF 457

Query: 465 AGKG 468
             KG
Sbjct: 458 --KG 459


>gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 479

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 160/475 (33%), Gaps = 42/475 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V +DSR +  G +F A  G + DGH F  +
Sbjct: 1   MIALSLAEIAAIVGGQSYDIPDADRLVTGPVVTDSRRVGPGSLFTAFAGERADGHDFAER 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+A GA A++ +                P +VVD+    L   A  +  +     +A+TG
Sbjct: 61  AVADGAVAVLATRPV-----------GVPAIVVDDVTAALGALARHVVERLGTTTVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R G + +  G          +N +  P       AL    S   
Sbjct: 110 SAGKTSTKDLIAQLLERKGPTVYPEGNL--------NNEIGLP-----LTALRADESTEH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLPK 240
             + + A   G  ++    +    G   N+G  H+    +++    AK  + E      +
Sbjct: 157 LVLEMGARYIGDIRYLTGLVPPRIGLVLNVGTAHLGEFGSRERIAEAKGEMVESLPSGEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ ADD   + + +R                     ++     +   T+       
Sbjct: 217 GGVAVLNADDPLVRAMAERTRARVVLFGEHSSADIRAANVRLTRQG-RPAFTLHTPTGCS 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +   +G+ +  +   L +       R E          + 
Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGLSADEIALALSEAGTLSRWRMEVTERPDGVTIVN 335

Query: 360 VDYAHTSNSLEMILKNIR------TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409
             Y     S+   L+ +           GR   V G     GD    +   +G++A+ L 
Sbjct: 336 DAYNANPESMRAALRALAAMGQGAQSRGGRTWAVLGLMAELGDEALAEHDAVGRLAVRLN 395

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +       S        E   G        +   A+      L   DV++V
Sbjct: 396 VSKLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 449


>gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
 gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
          Length = 493

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 93/494 (18%), Positives = 171/494 (34%), Gaps = 50/494 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +++Y   P    Q+   P QW+E    E   DSR ++ G +FVA+ G + +GH F+P 
Sbjct: 4   LANILYGVQPAWSRQMPYIPPQWQELVFGETVIDSREVEPGTLFVALAGERTNGHTFLPD 63

Query: 63  AIAQGAEAIVVSS---------------------AYSLQDFSATIRSNTPILVVDNTRKF 101
            IA+GA   +VS                        +     +       ++ VD+    
Sbjct: 64  VIARGALGALVSRTEIEARTTILARTPRRWALVNPVTGAGLDSATPGVCLLIAVDDPLMA 123

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L   A     +    ++ +TG+ GK+S    +  +  +   +          S  + ++ 
Sbjct: 124 LQRLAVYHRRQLTPTVVGITGSVGKTSTKEALAALLSQRFCT--------LKSKRSFNSE 175

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            T P+ +        ++   +   +        D  R        G  TN+G  H++  +
Sbjct: 176 ATVPTTLLQLAPAHEVAVLEMGMWAPGEIRFLADLAR-----PQIGLVTNVGPTHLERLK 230

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +Q+A + AK  L EEL       +    D      M+   NA      +         + 
Sbjct: 231 SQEAIWYAKAELVEELPRDGWAVL--NADDPLVWAMRDMTNARVFSYGLAPHATLWANQV 288

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   + +  + +      PL G   +Y AL A  + + +G++   ++  L     
Sbjct: 289 ESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMSVGLILGMEWPAMIAGLTD-PA 347

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGK 398
              R   V        I   Y     S    L  +   T GR + + G     G  ++  
Sbjct: 348 AQARLRVVAGQHATTLIDDTYNAAPISTLAALDLLGA-TPGRRVAILGDMLELGSAEEEG 406

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNR--IEAIRTAIEM 455
              +G+ A  +AD+ +        +    I       G+P           EAI +    
Sbjct: 407 HRQVGQRAAQVADLLVTV-----GQRAIWIAEAARQAGMPSAHILVCMTNAEAIASVRPR 461

Query: 456 LNKQD-VLVVAGKG 468
           L   D +L+ A +G
Sbjct: 462 LMPGDHILLKASRG 475


>gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           coahuilensis m4-4]
          Length = 456

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 160/472 (33%), Gaps = 38/472 (8%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   +        ++++ ++ V  D+R + AG +FV   G   DGH F+   
Sbjct: 1   MIKRTIGQIATIVGALNDVSLFKDQLVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDV 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A     +              P++VV+++   L   +     +    ++ VTG+
Sbjct: 61  LEKGAGAAFWEKSAG------PAPEGLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +           G          +N +  P  I     LS      V 
Sbjct: 115 NGKTTTKDILFALLSTKYRVHKTEGN--------YNNHIGLPLTI-----LSLPEDSEVA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +         A   TN+G  H+    +++    AK  + E L  +   
Sbjct: 162 VLEMGMSGFGEIRELTQIALPDAAIITNIGESHLQDLGSREGISKAKFEIVEGLKSEGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                       + +R    G    + G               +    T SV   D +F 
Sbjct: 222 VYNG----DEPLLQERVKGYGGSKETFGRHSSNTMYP-TKLAPSGFGTTFSVNVSDEEFH 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ GE  V N + A  +    G+    + + L  L +   R E          I   Y 
Sbjct: 277 LPILGEHNVMNTMGAMLIAKFFGVGFGDMQKGLSTLKLTGMRLEVSTGAKGETIINDAYN 336

Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
            + +S +  +  ++TI T+G+   V       G  ++     +G    D  D  +     
Sbjct: 337 ASPSSTKAAIDLLQTISTTGKRYFVVSDMLELGPNEEAFHHEVGTYVTDDIDCVL--TYG 394

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG-NRIEA-IRTAIEMLNKQDVLVV-AGKG 468
           P S     I       +P       +   A I     ++   D ++V A +G
Sbjct: 395 PLS---SFIAEGAKETLPEDRVIHFDEKSALIAYLKVVVKSDDTVLVKASRG 443


>gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
 gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
          Length = 477

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 88/467 (18%), Positives = 165/467 (35%), Gaps = 36/467 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              ++I   +  P+      I  +S DSR ++AG  F AI G++ DGH +   A+A GA 
Sbjct: 6   TVADMIAITAGRPVGNLPTGITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFAVANGAG 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV+         A  R   P++VV++    L   A     +    I+AVTG+ GK++ 
Sbjct: 66  LLVVAEG----KLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q    SG     +   +               P+ LA+  +           +  
Sbjct: 122 KEMLRQALAPSGRVHAAVASFNNHWGV----------PLTLARMPAD---TEFGVFEIGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G  +  +  ++      T +   H+   +  +   +AK  +FE  L      I+  D
Sbjct: 169 NHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEG-LEDGGFVILNRD 227

Query: 250 DAYSKEVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +A  +++ + A + G   +     +      L    +      +   + G+  +    +P
Sbjct: 228 NAQFEQLEEAAQDQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIP 287

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAH 364
           G     NA+   G     G +     E L  L  V GR +    T   G  + +D  Y  
Sbjct: 288 GRHIADNAMAVLGAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNA 347

Query: 365 TSNSLEMILKNIRT---ITSGRIIVVFGC---GGDRDQGKRPIM-GKIALDLADIAIVTD 417
              S+   +  +        GR + V G     G+        + G +     +   +  
Sbjct: 348 NPASMRAAIAVLAETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWL-- 405

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E    +R  +   +   I      E    A++ +   D L+V
Sbjct: 406 ---AGEAMAALRDALPDSVT-VIWFPTTAELADFALQWVQPGDALMV 448


>gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 423

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 146/411 (35%), Gaps = 47/411 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P++  +   ++   DSR +Q G +FVAI GN  DGH F+  A   GA A +V      ++
Sbjct: 2   PVKLSDLFGHKFVIDSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKDTGFEN 61

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                      ++V NT +FL   A  +  K    I+ +TG++GK+S    V  +     
Sbjct: 62  ----------QIIVPNTVEFLGQLAKTIVEKFKPKIIGITGSNGKTSTKEIVWSVLSSEI 111

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G  ++         +  P  I     ++    + V  + +     G  ++    
Sbjct: 112 SAFKNEGNLNS--------EIGLPLSI-----INSYRGESVLILEMAQRVVGDIEYLCKI 158

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                G   N+G  H+    + +  F  K ++ E        A++  DD   +       
Sbjct: 159 FPPDIGVLLNVGSAHVGVAGSVENIFKGKWQIVENSKE----ALVNFDDERMRC------ 208

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               +    G  G    L K     +   +T   EG++F +  P    +      ++A +
Sbjct: 209 ---TKCRYFGTTGGDYILSKREYNGSSTILTFEYEGEEFYYQLP---GYWTKPMALSALV 262

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT 380
              I     ++   L   +  P +  F       G +  D Y  +  S +  ++ I    
Sbjct: 263 AFGIADMIDVLFNPLNLANYKPLKGRFNVHRFSKGYLIDDTYNASYESFKAGIEEILENF 322

Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
                 + G     G+        + ++   L D  +V D   + E+ + I
Sbjct: 323 PKPRYAIVGAMKELGEYSTYYHKKLSELLEQL-DGVVVYD---KEEESKDI 369


>gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
          Length = 456

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 138/424 (32%), Gaps = 33/424 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I      P       +  V +DSR  Q G +FVA+ G   D H F+
Sbjct: 5   MKTLDL------NFICATLNLPQPAENHPVCRVITDSRQAQEGDLFVALAGENHDAHDFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  +A+GA AIV  S  +                V +T   L   A+         +  +
Sbjct: 59  PDVLAKGARAIVSRSDLAGVAG---------CFFVPDTLHALQQMAAAWRKAVNPFVFGI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++V   +  + +    +   +      ++        T   +      + +   
Sbjct: 110 TGSSGKTTVKEMLAAVLRAKFGADAVLATAGNFNNHIGLPL--TLLNLRGHHRYAVIEMG 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A        R+           N  R HI       A          + LP+
Sbjct: 168 MNHFGELAA------LTRIAA--PDTALVNNAMRAHIGCGFNGVADIARAKSEIYQGLPE 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ A+DA            G + L+ G +   IH + +          +    +  
Sbjct: 220 NGVALLPAEDANLPVFQAA--CNGLKTLTFGAEQGDIHAENIDLQPLSSTFDLVYGTERV 277

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P  G   V NA  AA L +  G+  A +   L     + GR +          +  
Sbjct: 278 RVSLPAAGRHNVANACAAAALAVQAGVSLAEIAIGLAAFGNIKGRLQQKRGIRNALILDD 337

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIV 415
            Y    +S++  L  +    + R + V G  G+  + + P M +     A     + A  
Sbjct: 338 TYNANPDSMKAALDVLAKQPAPR-VFVMGDMGELGEAEAPKMHEEIGVYARELGIEYAYF 396

Query: 416 TDDN 419
             DN
Sbjct: 397 VGDN 400


>gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
 gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
          Length = 464

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 141/387 (36%), Gaps = 28/387 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I +   +L   L    +   E     +S+D+R      +F  + G K D H ++ +AI 
Sbjct: 1   MIKQTTQQLAQTLKGKLLGSGEVVAENISTDTRQAVEKGLFFVLKGEKFDAHDYVEKAIE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV    ++         N P ++V++TR  L   A  L  +     +A+TG+SG
Sbjct: 61  QGCVALVVERELAV---------NVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSG 111

Query: 126 KSSVASFVQQICQR----SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           K++V     +I Q+         +  G  +            TP                
Sbjct: 112 KTTVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPE-------------HK 158

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE--ELLP 239
            T V + A+  G   +  +  +  A    N+   H++   +      AK  ++   +   
Sbjct: 159 FTVVELGANHIGEIAYTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGG 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K    + +    + KE+      + C              + V    N  + T+     +
Sbjct: 219 KAIVNLAHYYPEWQKEIGDHELQSFCYTGEDKDSYVDFWAENVELHLNGSRFTLHTPQGE 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P  GE  V NAL A  L +A+G D   V   LE+   V GR   +        I 
Sbjct: 279 IEINLPYLGEHNVSNALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKENVLFID 338

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIV 386
             Y    +S++  +  ++   + RI V
Sbjct: 339 DSYNANVDSMKSAVSVLKQYPAFRIFV 365


>gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 463

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 147/389 (37%), Gaps = 35/389 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFI 60
           L+D+      +LI             KIN +S DSR I  +   +F+AI G K +G  FI
Sbjct: 6   LKDIALILNAKLIGN---------NCKINSISIDSRKIFNKKNCLFIAIKGKKFNGECFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            ++I  GA A++ +   ++         N P L+V NT   L   +  +       I+A+
Sbjct: 57  KESIKNGAVAVINARKVNI---------NIPHLIVKNTIISLLRLSKWIRENSKAKIIAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+SV   +  I              S   +  ++       P+ L        + 
Sbjct: 108 TGSSGKTSVKEIIFNILN----------TFSNTIATKKNFNNNIGVPLTLL---RLNKNH 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-- 238
               + V  +  G  +   + IK       N+   H+   ++      AK  +F  +   
Sbjct: 155 NFAIIEVGGNKFGEIKTSSNLIKPDIALINNISESHLSGFKSINGVSKAKEEIFSGIQGK 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 + Y  + + +   K   N       +  + K+ +LK +   +   + +IS + +
Sbjct: 215 KNGIIVLNYNSNDWKEWKKKLKDNLVFWFGIIKNKKKYFYLKNIKKENFCIKFSISTQKE 274

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + +   PL G   ++NA+ A  +   +G     +   L+K +    R   +  N     I
Sbjct: 275 ECEVSLPLIGYHNLFNAMAAIAISFLVGASMESIKYGLKKSYPFKRRLFPIFLNKNKIII 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              Y     S+   +  +  +   +II++
Sbjct: 335 DDSYNANVGSMISAISVLNNMPGYKIIII 363


>gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
 gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
          Length = 454

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 156/421 (37%), Gaps = 35/421 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L  K   EL N +     ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I
Sbjct: 1   MLTRNL--KTITELTNTI--INEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV+  Y   +       + P++ VDNT++F+   A          ++A+
Sbjct: 57  EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +                +       T                 
Sbjct: 110 TGSNGKTTTKDIMSSLLKEKYKVVKTQKN----YNNEIGLSKTIFDIDD---------DT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +   + G  +   +         TN+G  H+   +T++    AK     E L +
Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKF-EILEGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I+  DD   +EV +        +           ++ + A       +I+    D 
Sbjct: 216 DGIFILNNDDPILREVKQEYKLPEKNITFGIKPDSDYRMEMIKADETGSTFSIN----DH 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +  +     +  
Sbjct: 272 VFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDKF-HILND 330

Query: 361 DYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415
            Y     SL              R I V G     GD +      +GK I  +  D  + 
Sbjct: 331 SYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLA 390

Query: 416 T 416
           T
Sbjct: 391 T 391


>gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 450

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 163/431 (37%), Gaps = 40/431 (9%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              E+   L      +R+   I   S +S+ I    +F+ + GNK DGH FI +AI++GA
Sbjct: 4   WLSEIAETLHTNIENFRDDVLIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEAISRGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKS 127
            + +     + +        + P L V++T K + + A      +    ++ +TG+ GK+
Sbjct: 64  ISFITQKDVNTE-------KSCPYLKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +   +V  +      S    G  +          L  P  + +A             + +
Sbjct: 117 TTKEYVFNVLSNKFRSYKNEGNFNNHIGLPYSI-LNIPDEVKVAT------------LEM 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S+ G         K   G  TN+G  HI+  +T+   F AK  + + +       I  
Sbjct: 164 GMSNFGEISFLSKIAKPNIGIITNIGVAHIENLKTRYNIFLAKSEIQDGMPNDGILIINN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D     +    H    +V++VG +       K     +     +    K F   F   
Sbjct: 224 DND----ILYSHRHELKRKVVTVGIENDADFRAKDIQKVDNGFFFVVSNHKYFIESFN-- 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               +YN+L A  +   +GI+   + + + K   +  RFE +  +     +   Y  +++
Sbjct: 278 -FHDIYNSLFAIAVGEILGIEKEAIEKGILKKCGLRRRFEVIKKDGL-TVVDDSYNASTH 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSE 423
           S+   +  +    SG+ I+V G     G+  + +   +GK I     D+ I T      +
Sbjct: 336 SMMSAINGVCGF-SGKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVIICT-----GK 389

Query: 424 DPEKIRAEIIH 434
           D   I  E+  
Sbjct: 390 DAFYIFDEVRK 400


>gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 459

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 138/405 (34%), Gaps = 20/405 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++       I +    P     + IN + +DSR  Q+G +FVA++G   D H F+   +A
Sbjct: 5   IMKTLTLNFICETLNLPKPQTNQTINRIITDSRQAQSGDLFVALIGENHDAHDFVADVLA 64

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A+V    +               L VD+T   L   A          +  +TG+SG
Sbjct: 65  KGALALVSRDDFVGVSG---------CLKVDDTLIALQKLAKAWRQVINPFVFGITGSSG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  + +    +   +      ++           P+ L    +   +     +
Sbjct: 116 KTTVKEMLATVLREKFGADAVLATAGNFNNHI-------GLPLTLL---NLRENHRYAVI 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +  G         +       N  R HI                  + + ++  AI
Sbjct: 166 EMGMNHFGELAVLTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQGIQQDGLAI 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DDA          N   +  + G+    IH + +       +  +    +      P
Sbjct: 226 LPIDDANLPIFQAACKNLNLQTQTFGFAQGDIHAENLVLQPLASEFDLIQGSECVHITLP 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   V NA  AA L +A G+    +   L     + GR +          +   Y   
Sbjct: 286 VAGRHNVSNACAAAALALAGGVKLTEIARGLANFANIKGRLQVKHGIKNSTILDDTYNAN 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +S++  L  +  + + R + V G  G+  + + P M +     A
Sbjct: 346 PDSMKAALDVLAKMPAPR-VFVMGDMGELGENEAPKMHEEIGIYA 389


>gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
 gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
          Length = 469

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 159/471 (33%), Gaps = 44/471 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+        +   +  +  VS+DSR +  G +FV + G + DGH FI  A  +G  
Sbjct: 5   TLQEIAEATGGRLIGEAQAVVCAVSTDSRQVAPGELFVPLKGERFDGHDFITTAAGRGVT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +++ ++        + +    + V++T + L   A+    +    ++AVTG++GK++ 
Sbjct: 65  AFLMAESWLAAHG---LPAGASAVAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              + +I  ++G      G  +               P+ L         +    V +  
Sbjct: 122 KEMLARILAQTGPGLKTEGNLN----------NLIGLPLTLF---RLTGRERWAVVEIGM 168

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           S  G +  RL  I     G  TN    H++   + +    AK  LF   L + + A+   
Sbjct: 169 SEFG-EIDRLAEIADPQVGIITNAFPAHLETLGSVEGVARAKGELFLR-LKEGAVAVYNV 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD          +         G +     +K +      +  T+ +   +        G
Sbjct: 227 DDPLVSSCPTHLNVTRLTFGLRGAEVSSASIKSLGKEG--ESFTLRLPDGEEQVTLKAYG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              +YNAL AA    A+G+   ++   LE+      RF+          I   Y     S
Sbjct: 285 RHNIYNALAAAAAAHALGVPGQVIRLGLEEFTPYDKRFQLEEVAGV-TLIDDSYNANPAS 343

Query: 369 LEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           +   L  ++ +  G R   V G     G   +     +G  A    +   +         
Sbjct: 344 MAAALATLKEVAGGARTAAVLGDMLELGLGTEEAHRELGGKAAATVERLYL--------- 394

Query: 425 PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +  E+  G           +      E  R     L   D ++   KG
Sbjct: 395 LGGLATEVEKGALEAGLSPERIVHAATHEELARELAAWLEPGDCVLF--KG 443


>gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
 gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
          Length = 453

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 157/450 (34%), Gaps = 45/450 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I+  + DSR I+   +F+ I G K DGH FI  A  +G       +       +      
Sbjct: 26  ISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGCSTSFTETE------ALDFPEG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +++V++  + +   A     ++   ++AVTG+SGK++    +  +  +   +    G 
Sbjct: 80  ISVVLVESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDLIASVLSQKYKTLKTQGN 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAG 207
            +      Q      P                     +E     LD  R  +  ++    
Sbjct: 140 FNNEYGIPQTLFNLQPE---------------HEIAVIEMGMDHLDDIRKSIGEVRPHIS 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  HI+  +TQ     AK  +FE +      A++  DD Y  ++ +         
Sbjct: 185 VITNIGTAHIEILKTQDNILAAKKEIFETM-GPGDIALLNGDDVYLNKIKEDEEPFSVVR 243

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + +  +   +  ++V +     +     E     F F  PG   VYN L A  L     +
Sbjct: 244 VGIKGEDLSLKAEQVDSSAQGIRFVADGE----HFHFAYPGIHNVYNCLTAIWLGRYYQM 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIV 386
               +   L+       R + V        I   Y    ++++  L        S R + 
Sbjct: 300 THEEIQRGLDAFKPSGNRMDIVRVREA-TVINDSYNANPDAMKAALDMLWDMGKSCRRLA 358

Query: 387 VFGC---GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK- 442
           V G     G+  +     +G  A + AD+ I          PE        G     E+ 
Sbjct: 359 VLGDMLEMGEMAESGHLEIGAYAAEKADVLIAVG-------PESKAYIKGAGASLADERC 411

Query: 443 ---GNRIEAIRTAIEMLNKQDVLVV-AGKG 468
               +   A +   +++   DV+++ A +G
Sbjct: 412 FWTADAEGAGKLLRKLMAPGDVILIKASRG 441


>gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
 gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
          Length = 468

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 133/410 (32%), Gaps = 27/410 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
               +         VS+DSR +  G +FVA+ G + D H F+ +  A+GA A +VS A  
Sbjct: 15  GATVIGDGSVAFARVSTDSRTVGEGDLFVALKGERFDAHDFLAEVAARGASAALVSRAGV 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           L           P L   +TR  L   A     +    ++AVTG++GK++V   +  +  
Sbjct: 75  LP--------GLPQLKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKTTVKEMIASVFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +     ++      ++            + LA A      +   +   E  +      R
Sbjct: 127 AAVGQDARLSTAGNFNNDIGLPLT----LLRLAPAHRLAVIELGMNHPGETGTLA----R 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +           N  R+H ++  T +A   A                ++  D     + +
Sbjct: 179 IAA--PTIALVNNAQREHQEFMATVEAV--ALEHASVIHALGPDGVAVFPADDRYAGIWR 234

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A      V              V        + I       +      G     NAL A
Sbjct: 235 VAATGNRIVDFALNDDGRATAAAVTGTTQGGVLAIDTPAGRIEVRLRALGAHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374
               +A G++   +   LE    V GR +       +  G  +  D Y    +S+   + 
Sbjct: 295 TAAALAAGVEPDAIRAGLEAFEPVKGRLQVKRASLASLAGAMLIDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPR 421
            +    + R++V+   G  GD        +G  A     D    T +  R
Sbjct: 355 VLAQCAAPRVLVIGEMGEVGDAGPAFHREIGAYARERGIDALYATGEATR 404


>gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
 gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
          Length = 470

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 153/474 (32%), Gaps = 38/474 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      ++         Q  +  ++  V  DSR    G +FVA+ G++ DGH F   A+
Sbjct: 4   LTLDRIAKITRSRLRGSAQPTDT-VDGPVVIDSREAAPGSLFVALRGSRVDGHDFAEAAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A++ S              +  +  +    + +      +      +I+ VTG+S
Sbjct: 63  RAGATAVLCSRPVDAPHLLVDGGDDAVVAALAKLARAV------VAELPDADIIGVTGSS 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    + Q  QR G +    G  +               P+ +        +     
Sbjct: 117 GKTTTKDLLAQTLQRIGPTVAPPGSFNNEIGH----------PLTVL---RADQTTRFIA 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPKES 242
           + V A   G   H         G   N+G  H+    ++     A  ++        +  
Sbjct: 164 LEVAARGVGHIAHLCQIAPPRIGVVLNVGSAHMGEFGSRDTIAQAKGELVEALPAAAQGG 223

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +  R                      +     + + T+++       
Sbjct: 224 VAVLNADDDAVIGMASRTAARVVSYGLAPDADVRAEGIALDERG-RPRFTLAIGEDTAPV 282

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVD 361
              L G  QV+NAL  A +   +G     +   L +   V   R E          +   
Sbjct: 283 SLRLVGTHQVHNALAVAAVLRELGEPVTAIAAALSEAGPVSRWRMEVTERPDGVTIVNDA 342

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTD 417
           Y     S+   L+ + T+ SGR    V G   +     R     +G++  +     ++T 
Sbjct: 343 YNANPESMSAALRTLATLASGRRAFAVLGHMAELGSAHRTEHERIGRLVTESGVDVLITV 402

Query: 418 DNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E    I              +   +  EA+    E L  +D++++  KG
Sbjct: 403 ----GEQAASIADGAASVADWKGETVTVADVTEAVAVLKERLRPKDIVML--KG 450


>gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 454

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 172/474 (36%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 4   MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHDYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD T   L   A     +    ++ +
Sbjct: 57  KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDETLFALQQLAQFYRREINVKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   ++ I   +       G  ++              P+ + +        
Sbjct: 111 TGSNGKTTVKDIIESILSSTYRVHKTKGNFNSQ----------IGLPLTILEMKR----- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E       Q R                              AK +L      +
Sbjct: 156 NTEFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLR 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E+   +Y  D     ++ R +           +     L       ++  V   +     
Sbjct: 216 ENGLFLYNGDE---PLLSRNNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKI 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+        I  
Sbjct: 273 QYDVPLHGKHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQFLTAKKGFTIIND 332

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + I+V G     G + +     +GK+  +     + T
Sbjct: 333 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEENIQYVFT 392

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  + +  E      I       N+ E     ++++ K+DV+++  KG
Sbjct: 393 ----YGELAKFVAEEARKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLL--KG 440


>gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O11]
          Length = 452

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ +++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQRGTPIDENVSG-----PIIWIEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCSVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLKAHDRVLV--KG 437


>gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
 gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
          Length = 467

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 147/384 (38%), Gaps = 20/384 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++   L+   +      +  V++D+R      +F A+ GN  D H ++ QAIA
Sbjct: 1   MIKLTTKQVAQILNGQLIGDEYLVVETVNTDTRQAVENGLFFALKGNHFDAHHYVDQAIA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG  A+VV            +  N P ++V +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  QGCIALVVEQ---------RMLINAPQIIVADTRLALGELAKWLKAKLNPKTIAITGSSG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V     +I Q+    + ++  TS   +      LT                     +
Sbjct: 112 KTTVKEMAAKILQKLTACADEVLYTSGNLNNDLGVPLTLL---------RLTEQHKFAVI 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +     +  A    N+   H++   +      AK  ++  L P+    I
Sbjct: 163 ELGANHLGEIAYTTSITQPDACVVNNVAAAHLEGFGSLAGVAQAKGEIYRGLPPEGIAII 222

Query: 246 IYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             A    A+  E+  R   +     S  ++      + V    N     +     + +  
Sbjct: 223 NQASYSSAWQTEIGSRKVQSFALYPSAEHKPVDFSAENVHLHLNGSTFMLHSPQGEIEIN 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  GE  V N L A+ L +A+G D A +   LE+   V GR   +  N     I   Y 
Sbjct: 283 LPYLGEHNVSNVLAASALVMAVGADLAAIKAGLEQPVAVKGRLCPLPINRYCLLIDDTYN 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVV 387
              +S++  ++ ++   + RI  V
Sbjct: 343 ANVDSMKSAVQVLKNYQAFRIFAV 366


>gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 444

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 86/470 (18%), Positives = 166/470 (35%), Gaps = 50/470 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+     +L+++ +            E S D+R I    +F A+ G+K+DGH F+ +
Sbjct: 4   LDDLLIATGGKLVSKGNEI--------FKEASIDTRTIGKNDLFFALKGSKKDGHEFVDE 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ + A   VVS              N  +++VD+T K L   A  L  K    I+AV G
Sbjct: 56  ALIK-ASGAVVSKN------EGMDFKNKTVVIVDDTLKSLQNLAGYLRKKFKGKIIAVVG 108

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    +     +        G          +N +  P  I         ++  +
Sbjct: 109 SNGKTTTKELIASFLSKKYKILKTEGN--------FNNNIGVPLCIS-----RIENNTEI 155

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +  G  +   D +       TN+G +HI+   + Q           E+LP   
Sbjct: 156 MVLELGTNRPGDIKELCDIVYPDYALITNIGYEHIEGFGSIQGVR----EGELEILPYVK 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 DD +  + +KR                    + +   ++  +     +   F  
Sbjct: 212 TVFANGDDKFLMDGLKRYSGQILTFGMSKECD--FRAENINFYNDHVEFDFYSDIAAFAV 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G + +YN   A  +   +GI    + +  E    V  R E +  N         Y
Sbjct: 270 KTPLVGIYNIYNLTGAIAVATFLGISKCSIQQITESFTSVKMRGEIIKINGVEIFFDA-Y 328

Query: 363 AHTSNSLE-MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
               +S++  + +  R     R + V G     G+        +GK   ++     +   
Sbjct: 329 NANPSSMKVALQELTRRKKGRRTVAVLGDMLELGEFTDLAHEEVGKWVNEMGIDIFI--- 385

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   K     +  + G++   + I+A     + L   +++++  KG
Sbjct: 386 -----GVGKFIKNALRYVNGYV-FNDPIQAAEFLKKELKGSEIVLI--KG 427


>gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
 gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
          Length = 456

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 88/499 (17%), Positives = 156/499 (31%), Gaps = 76/499 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L       F E+ + L       Q+       V  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MQL------TFYEVASVLKAKNDVHQFPNCTFRNVEFDSRLIEEGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                + P ++VD+    L   A     K   ++ 
Sbjct: 54  FIATAFENGAVATLSEKELD----------DYPSILVDDVLAALQRLAQYYLEKMKVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     +    L                       +  +  AK ++     
Sbjct: 156 -------VLEMGQDHMGDIHLLSTIAQPKVGIVTLIGEAHLEFFKSRHEIAKGKMQIANG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            KE   +I   D    + +    N           G    +        K  +T      
Sbjct: 209 MKEGGLLIVPADKIINDFLPSQQNVV-------RFGPDEDIFLTKLEERKDSLTFETNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA++AA + +  G+    + +    L +   R E+    +    +
Sbjct: 262 DNAIDLPVTGKYNATNAMIAAYVALKEGVTQDKIQKAFATLELTRNRTEWKKAKNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +         +
Sbjct: 322 SDVYNANPTAMRLILETFSTIPFNEKGRKLAVLADMKELGADSKQMHGAM---------I 372

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           T  NP      +I +EI      F+   +       A E+          GK H   + V
Sbjct: 373 TSLNP------EILSEI------FLYGEDMAALFAYAKEIFPP-------GKAH---YFV 410

Query: 476 TNGEKKMSVD-CDIIREIL 493
            N EK    D    ++E L
Sbjct: 411 KNAEKDQFSDLVKAVKEAL 429


>gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
 gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
          Length = 426

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 85/445 (19%), Positives = 153/445 (34%), Gaps = 49/445 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
              +S+ ++ G +FVA+ G + DGH FI +A+  GA AI+        D          I
Sbjct: 9   FVLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSDR---------I 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +V+++   L+  A    G     ++ VTG+SGK++    +  + +         G    
Sbjct: 60  FLVESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGN--- 116

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +     P  I     L+    + +  + + AS  G   H             N+
Sbjct: 117 -----MNTEYGLPLSI-----LNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNV 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+++  T++           +   + + A+   DD      +++        L  G 
Sbjct: 167 GSAHLEFFGTRERI-METKMEIIKHSKENAIAVTLFDDPD----LRKEVPRYRNTLFFGK 221

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +G    LK                   F                +AA LC+   +   + 
Sbjct: 222 EGGDSVLKDWWYYEGSTIAEFEAFDSLFTVKLSG-YWNGGQLLNIAASLCVMRTLGETVD 280

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389
           +  L  L  VPGRF       +G  I  D Y  +  + +  ++ +      +  VV    
Sbjct: 281 IFDLASLKTVPGRFNVR--EKKGVLIVDDTYNASPEAFQTSIEALLRFPGKKFAVVGAMK 338

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------------DPEKIRAEIIHGIP 437
             G+R +     +G+    L D   V    P +E            DPEKI  ++   + 
Sbjct: 339 ELGERSKEFHEELGERLNVL-DGVYVFLSEPEAEWIKSKKIILKSDDPEKIAKDLATRVK 397

Query: 438 G---FIEKGNRIEAIRTAIEMLNKQ 459
                + K +R   I   +EM  K+
Sbjct: 398 KGDVVLFKASRAVRIERVLEMFEKE 422


>gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum WCFS1]
 gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
 gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum WCFS1]
 gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
          Length = 462

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 156/475 (32%), Gaps = 39/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ--WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+Q        E+   +     +  W +  +  V+ DSR +QAG +F+ ++G   DGH 
Sbjct: 1   MKMQ------VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +I  AI  GA A +        D +  +  + P+++V +T   L         K    ++
Sbjct: 54  YIQSAIEHGAVATLW-----ASDHADDVPEDLPVIMVADTLTALQQLGQYYLQKINPKVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +       +      +            T   +     +  + 
Sbjct: 109 AVTGSNGKTTTKDMIASVLSTQFNVTKTHANFNNQIGVPV-----TLLSMEPNTEVVVVE 163

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   ++  S          ++      T +G  HI++  T+    +AKM +   L 
Sbjct: 164 MGMDHFGELDFLSRL--------VQPDVAVITMIGEAHIEFFGTRDRIADAKMEIVHGLK 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +             + +RA        + G                 Q    +    
Sbjct: 216 EDGTFIFNG----DEPLLQERAKEVSQHQRTFGLDDTNTLAGSDITTSRAQTQFKTSLWP 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  +  P+ G + V NAL A  +     I  A   + +        R E++        +
Sbjct: 272 DNTYTIPMMGAYNVNNALAALLVADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAIL 331

Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
              Y     +   +L     +   G+ I V G   +       +   +A +L D A +  
Sbjct: 332 SDVYNSNPTAARRVLAAFAAVPTKGQRIAVLGDMLELGDQSDALHMSLASEL-DPATIAS 390

Query: 418 DNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E    +   +      G   + +   + + I      ++  D +++  KG
Sbjct: 391 VYLNGEHMRALAEVLQEKYPAGAVHYYQTDQQPQLIADLTATVSADDQVLL--KG 443


>gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 149/471 (31%), Gaps = 42/471 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ + + +  + ++   +      +   + VS DSR+I+ G +FVA+ G + DGH ++  
Sbjct: 2   LKAMTFNELAQALSARVLS----SDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLND 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             A+GA   +V    +         S  P L+V +TR  L    +         + A+TG
Sbjct: 58  VAAKGAVGALVQREVA--------DSALPQLLVADTRLALGQLGALNRAAFTNPVAAITG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   +  + +  G      G  +             P                 
Sbjct: 110 SSGKTTVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPE-------------HTA 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS  G +      +     +  N                        E L    
Sbjct: 157 AVIELGASRIG-EIAYTVALTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFD 301
            A++  DD   +    RA        +V       H   +          T+        
Sbjct: 216 TAVLNLDDKAFETWRVRAAGRKVLTFAVLNAAADFHASNITVDARGCPSFTLHSPQGSEH 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   V NAL AA    A+G+    +   L  +  V GR       +    I   
Sbjct: 276 VQLNLLGNHNVANALAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDT 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           Y    +S+   +  ++   + +++V+      GD  +     +G  A    D       N
Sbjct: 336 YNANQSSVCAAIDLLKGFDTRKVLVLGDIAELGDWAEQSHREVGAYASGKVDALYAVGPN 395

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLVVAGKG 468
                   +   +    PG      + E I+ A+          +++  KG
Sbjct: 396 --------MAHAVNAFGPGARHFATQAELIQ-ALTAAEHDTHTTILI--KG 435


>gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 469

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 144/407 (35%), Gaps = 26/407 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I      +  +++   +    + ++  VS+D+R I++G +++A+ G   +GH FI  A 
Sbjct: 1   MITTTLSWIAGKVNGKLVNGNADTQVLAVSTDTRTIESGAVYLALKGPNFNGHDFIEAAE 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A++ S             ++ P++ V++T++ L L  + +        +A+TG+S
Sbjct: 61  NAGASAVIASENV---------TTSLPVISVEDTKEALGLLGAAVKQHIAPKTIAITGSS 111

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V      I  R G      G  +               P+ L              
Sbjct: 112 GKTTVKEMCAAILARRGNVLATNGNFN----------NDIGVPLTLL---RLEPHHEYAV 158

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +  + +K    +  N    H++   +      AK  +F+ L       
Sbjct: 159 MELGANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLEKDGVAI 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFL 303
           +            K                     + +           +     +    
Sbjct: 219 VNVDSQFAEFWQGKLKQTKTLTFSPQQKNDADFQAEDITIGLDGCASFHLVCPQGEIAIQ 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V NALVAA L + +G +   V + L  +  V GR        +   +   Y 
Sbjct: 279 LTIPGVHNVGNALVAAALTLQVGANLENVRDGLIAMQQVSGRLNVKQLTDQVRLLDDTYN 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
               S+   +  + + +  R++V+      G++ +     +G+ A  
Sbjct: 339 ANVASVNAAIDTLSSFSGIRVLVLGDMKELGEKARFYHEQVGEYAKQ 385


>gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 469

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 169/463 (36%), Gaps = 36/463 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +  DSR    G +FVAIVG   DGH+F+  A  +G    +VS+   + D       
Sbjct: 26  EITNIVIDSRLAGPGAMFVAIVGESTDGHIFLESAHQEGCRFFLVSNESYITDR----FK 81

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           ++ ++ VDNT   L L A           + +TG+ GK++    V  +      +     
Sbjct: 82  DSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGKTTTRDMVYSVLASKFNT----- 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                    ++       P+ L              + +  S  G  ++  + ++   G 
Sbjct: 137 -----IKNEKNYNNQFGVPLTLF---RLEPGHQCAVIEMGMSGFGEIEYLANIVRPKIGI 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII----YADDAYSKEVMKRAHNAG 264
            TN+G  HI++  +Q+  F AKM +        S  I     Y      +    +  +  
Sbjct: 189 ITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYLRTELERYRNSQKDSYK 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                +  Q       +     +K + T S E + ++F  P  GE  V NA+ A      
Sbjct: 249 VYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNAMAAILAGHI 308

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    + + L        R + + T+       V Y  + +S+   LK ++     R 
Sbjct: 309 TGMTMEEISKGLLDFVATENRQDIIKTDRFTLINDV-YNASPDSMIAALKVLKLYKDRRR 367

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-RAEIIHGIP--G 438
           + + G     G   +     +G  ++D AD  I+T         + I    +  G     
Sbjct: 368 VAILGDCLEMGQYAEEGHRRVGYQSIDKAD-IIITA----GHAAKFIGVEAMERGFDLSR 422

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGH--ETVHIVTNG 478
                 + E I +  +++   DV+++ A +G   E +  V  G
Sbjct: 423 VFHFETKEELIDSLPKIVEDGDVILLKASRGMKFEDIVEVLKG 465


>gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 446

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 149/443 (33%), Gaps = 41/443 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR ++ G IF A  G K DGHL+I QAI++GA   V++             +N P+
Sbjct: 26  ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVITDEN-------YYDANKPL 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +T   +        GK     + +TG+ GK+S  + +  +  +           + 
Sbjct: 79  VLVKDTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQKLKIYEAFKNFNN 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
               A          I L    +           +++ S  L            G  T +
Sbjct: 139 ELGVAIVTSN-----IDLGAQYAIFEIGTNNPGEIKSLSEFLQ--------PDVGIITGV 185

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI    + +     K+ + E +       I    D       +     G  V   G+
Sbjct: 186 GHSHIGRFGSLKEITKEKLAISEGVKKDGVLWINDGVDTSYYNFPE-----GINVKKFGF 240

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   +   +  +    ++     + F    P      NAL A  L          +
Sbjct: 241 SKDSDIYIEELNVEKEVNFIVNFNNFRYCFRINHPFSHFAVNALPAIALAFENQFHYEEI 300

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              L+K   V GR E +        I   Y     ++   ++N+  I + + I + G   
Sbjct: 301 YRGLDKFVPVEGRGEIIR-TQNKIIINDTYNAGFEAVLSAVENLSKIDAPKKIAILGEMA 359

Query: 393 DRD-------------QGKRPIM--GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           + D               KR  +    +     D   + + +   +  E I A+I+ G  
Sbjct: 360 EIDGFEEKLYSRLKNEVEKRNDIYFYLVGESFKDFQSLENVSYFKDKSELINADILKGDG 419

Query: 438 GFIEKGNRIEAIRTAIEMLNKQD 460
            ++ K +R +     +E L K +
Sbjct: 420 VYLVKASRSKRFEELVEYLKKGE 442


>gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
          Length = 456

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 158/476 (33%), Gaps = 53/476 (11%)

Query: 1   MKL--QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL  QD+I     + I +         ++ I  +++DSR      +FV + G++ DGH 
Sbjct: 1   MKLDIQDIISAVGGKCIQE------GLIKQPIEVITTDSRSQVTNGLFVPLKGDRFDGHE 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI     +G  A +      +     T       + V++TR+ L         +    ++
Sbjct: 55  FIKSVYEKGVIATLTMEDKVIDPRLWT-------IKVEDTRQALLDLGHYYRNQFTVPVV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG+ GK+S    V  +           G  +               P+ L K  +   
Sbjct: 108 GITGSVGKTSTKEMVAAVLSGKWHVHKTDGNFN----------NEIGLPLTLFKMDASHE 157

Query: 179 SQGVTHVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +  +        +H  + HRL           TN+G  HI+   +++    AK+ + + L
Sbjct: 158 AAVIEMGM----NHFDEIHRLSLAAAPEVAVITNVGTSHIENLGSREGILKAKLEILDGL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P     +   +D     +         +V          + + +          ++   
Sbjct: 214 MPGGLLVLNGDND----LLSTVGELPFNKVTYGLNTSNDYYAEAIANEGEYTTAIVTTPQ 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +      GE  VYN L A  +   +G+  A + + LE       R      +++   
Sbjct: 270 YKCNIRIKALGEHMVYNTLAAIAVAQYLGLSKAEIQKGLESYAPAKMRMHLETYDNQITV 329

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGC---GGDRDQGKRPIMGKIALDLA-DI 412
           I   Y  + +S+E  LK +R     GR I V G     G+        +G  A ++  D 
Sbjct: 330 IDDTYNASPDSMEAALKVLRDYDTKGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGIDR 389

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR----IEA-IRTAIEMLNKQDVLV 463
                          +   I  G               EA I      L  +D ++
Sbjct: 390 VY---------AVGTLAEYIFKGAKEQEGAPTFYYPTKEAFIEVMQRELQAEDTVL 436


>gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
 gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
          Length = 454

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 156/421 (37%), Gaps = 35/421 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L  K   EL N +     ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I
Sbjct: 1   MLTRNL--KTITELTNTI--INEKYHDVMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV+  Y   +       + P++ VDNT++F+   A          ++A+
Sbjct: 57  EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +                +       T                 
Sbjct: 110 TGSNGKTTTKDIMSSLLKEKYKVVKTQKN----YNNEIGLSKTIFDIDD---------DT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +   + G  +   +         TN+G  H+   +T++    AK     E L +
Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKF-EILEGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I+  DD   +EV +        +           ++ + A       +I+    D 
Sbjct: 216 DGIFILNNDDPILREVKQEYKLPEKTITLGIKPDSDYRMEMIKADETGSTFSIN----DH 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +  +     +  
Sbjct: 272 VFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDKF-HILND 330

Query: 361 DYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415
            Y     SL              R I V G     GD +      +GK I  +  D  + 
Sbjct: 331 SYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLA 390

Query: 416 T 416
           T
Sbjct: 391 T 391


>gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
 gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
          Length = 444

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 159/446 (35%), Gaps = 48/446 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I  V+ DSR ++ G +FVA+V    DGHL+I QA+A GA A++V   ++       I
Sbjct: 19  DADITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGAVAVLVDDQHA-------I 70

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P ++V +T   L              ++A+TG++GK +    +      +   +F+
Sbjct: 71  TPDIPAIIVPDTLLALQRLGQYRREMVNPKVIAITGSNGK-TTTKDMTAAILSTKFKTFK 129

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                          L+ P    +              V +     G        +    
Sbjct: 130 TPENYNNEIGVPMTLLSMPDDTEVL------------VVELGMDRPGQLTVLSHLVMPDI 177

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +G  HI++ QT+     AK+ + + L       +      + + ++ +A     R
Sbjct: 178 AIITMIGEAHIEFFQTRDNIARAKLEITQGLKSDGILLV-----PFDEPLLTQAAVKSDR 232

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                       L  V           +   +   F  P+ G + V NAL A      + 
Sbjct: 233 QYFGEKVSAIQALATVT----------TFTFEQQKFAIPVMGRYNVMNALAAISAGKLLS 282

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           ID       L+   +   R E + T+     I   Y     ++  +L  ++++ + R  V
Sbjct: 283 IDLKHAALALKNFDLTKNRTERLVTSQGVVLISDVYNANPTAVAAVLSTLKSLPARRKYV 342

Query: 387 VFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-E 441
           V G     G +       +G KI     D   +            + +++  G+      
Sbjct: 343 VLGDMLELGTQANHLHAELGPKILDTDVDGVYLVGSLFNQNTAPLLMSKM--GVERVHLY 400

Query: 442 KGNRIEAIRTA---IEMLNKQDVLVV 464
           + ++++  + A   + +    DV+++
Sbjct: 401 QTDQLK--QLASDLLAISQPGDVILL 424


>gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
 gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
          Length = 454

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 148/386 (38%), Gaps = 26/386 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q      + VS+D+R +  G +FV + G + DGH FI QA  +GA A ++    +    
Sbjct: 20  LQGINIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGASAALLEQRINDP-- 77

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   P + V + R  L   A+    +    I+AVTG++GK++V   +         
Sbjct: 78  -------LPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMI--------- 121

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  +G    I +   +       P+ L +     +S     + + A+  G  ++     
Sbjct: 122 -ASILGWVEPILATRGNLNNDIGVPLTLLE---LDTSHSFAVIEMGANRPGEIEYLSRLT 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN G  H+D     +    AK  +F+ +   E  AI+ ADD +       A  
Sbjct: 178 RPQVALITNAGPAHLDGFGDLKGVARAKGEIFQGM-GSEGVAILNADDPHFSYWRDLAGG 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +    +    + + A     + T+           PLPG   V+NAL A+   
Sbjct: 237 LPVMGFGLSRSAEVT-ARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAA 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           IA+G+D   +   L  L  +PGR +          +   Y     SL+  L+ +      
Sbjct: 296 IALGVDRQHLSASLAALPSIPGRLQIRRGIGGMRLLDDTYNANPASLQAALELLAKFPGE 355

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA 406
           R +V+  F   G+        MGK A
Sbjct: 356 RALVLGDFAELGEEAAPLHQAMGKQA 381


>gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 455

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 129/393 (32%), Gaps = 33/393 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +L       LI+          +   + VS DSR I+AG +F+A+ G + DGH ++ 
Sbjct: 6   KLSELTNALDARLIS---------ADASFDGVSIDSRAIKAGQLFIALTGPRFDGHDYLN 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +  A+GA A +V    +         S  P L+V +TR+ L    +       + + AVT
Sbjct: 57  EVAAKGAVAALVEREVA--------DSTLPQLLVKDTRQALGQLGALNRAAFTKPVAAVT 108

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++V   +  I +  G      G  +             P                
Sbjct: 109 GSSGKTTVKEMLASILRTRGSVHATRGNLNNDLGVPLTLLELAPE-------------HS 155

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G +     G+     +  N                        E L  +
Sbjct: 156 AAVIELGASRLG-EIAYTVGLTKPHVAILNNAGTAHVGEFGGPEKIVEAKGEIIEGLAAD 214

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             A++  DD        RA        ++       H   +           +       
Sbjct: 215 GVAVLNLDDKAFGIWKTRAAGRKVLTFALSNTQADFHASDLATDARGCPAFNLHSPEGVE 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NA+ AA    A+G+    +   L  +  V GR       +    I  
Sbjct: 275 RVQLNLLGTHNVANAMAAAAAAHALGVSLFGIATGLGAVQPVKGRTVAQLAKNGMRVIDD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            Y     S+   +  +    SGR ++V G  G+
Sbjct: 335 TYNANPTSMCAAVDILAGF-SGRTVLVLGDIGE 366


>gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
 gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
          Length = 457

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 148/415 (35%), Gaps = 26/415 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+  +     +N   I   +     IN VS+D+R ++ G +FVA+VG + D H F  QA+
Sbjct: 3   DVSLEQICSAVNGQLIEAGKSNNSLINSVSTDTRTVEEGALFVALVGERFDAHDFCGQAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A A++V     L         N   +VV++T+  L   ++ ++ +     +A+TG+ 
Sbjct: 63  EANASALLVQRKLDL---------NITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSC 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   V  I Q+ G   F  G  +               P+ L ++ S         
Sbjct: 114 GKTTVKEMVASILQQRGKVLFTAGNFN----------NDIGVPLTLLRSESS---DDYAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +    +K       N+   H++   +      A      + L     A
Sbjct: 161 IELGANHIGEIAYTTQLVKPQVALVNNVAAAHLEGFGSIDGVKQA-KGEIFQGLAAGDTA 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFL 303
           I+  +            +      S            +      +    +       D  
Sbjct: 220 IVNLESNGGDFWKDVLADKNVLTFSESDDTADYFATNIRINEQGEACFDMQTPQGAIDVE 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G+  V NAL AA L I  G   A +   L  L  V GR E    +     I   Y 
Sbjct: 280 LGIIGQHNVANALAAAALSIQFGATLAEIKSGLANLISVKGRVEVQQLSQNIKLIDDSYN 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  +++   K + +    R +++      GD        +G+ A   A   ++T
Sbjct: 340 ASVPAMKAAAKLLSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLT 394


>gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
 gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
          Length = 468

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 152/475 (32%), Gaps = 55/475 (11%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +    L     +         +  +++D+R +Q G +FVA+ G++ DGH F+  AIA+
Sbjct: 7   LTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTLQRGEVFVALQGDRFDGHDFVVAAIAK 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA   VV+  +++           P++ V +T +     A     +    I+ VTG+ GK
Sbjct: 67  GALCAVVNREFAVSHPE------FPLIPVADTLRAYQTLARSWRDRFSIPIIGVTGSVGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +    G      G          +N +  P  +   ++    +      + 
Sbjct: 121 TTTKELISAVLSHHGKVHKTFGN--------YNNEIGVPKTLLELRSDHDFA-----VIE 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +     G         +   G   N+G  HI    ++ A   AK  L  E+       + 
Sbjct: 168 MAMRGPGEIADLTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLN 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +           R   +    +  G    +     +         TI V G +     PL
Sbjct: 228 HD---------NRRLMSTATQVWSGTTITYGLEGGILQGELLGHETIRVAGIELP--LPL 276

Query: 307 PGEFQVYNALVAAGLCIA---IGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYV 360
           PG     N L A  +  A       +  +   L     L +  GR +          +  
Sbjct: 277 PGSHNASNFLAALAVLRAIAGWETSAEELYAPLSTGLSLQMPQGRAKRYHLAQDILLLDE 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416
            Y     S    LK +      R I V G     G+R       +G     L  D   + 
Sbjct: 337 TYNAGLESTLAALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETQRLNLDGLFIL 396

Query: 417 DDNPRSEDPEKIRAEIIHG--IPGFIEKGNR--IEA----IRTAIEMLNKQDVLV 463
            D             +  G  +  FI+  +    +A    I   +  L   D ++
Sbjct: 397 AD-------LAEAQAMAEGAMVIDFIDIQDLGSPQAHQLMIDKVLAFLKPGDRVL 444


>gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
 gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
          Length = 454

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 160/429 (37%), Gaps = 37/429 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L  K   EL N +     ++ +  +  +S+D+R I+   +F+A+ G+  DG  +I
Sbjct: 1   MLTRNL--KTITELTNTI--INEKYHDIMVKGISTDTRTIEKDNMFIALRGDNFDGQNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV+  Y   +       + P++ VDNT++F+   A          ++A+
Sbjct: 57  EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYISSLDCKVIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +                +       T                 
Sbjct: 110 TGSNGKTTTKDIMSSLLKEKYKVVKTQKN----YNNEIGLSKTIFDIDD---------DT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +   + G      +         TN+G  H+   +T++    AK     E L +
Sbjct: 157 EVAVLEMGTENFGEISQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKF-EILEGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I+  DD   +EV +        +           ++ + A       +I+    D 
Sbjct: 216 DGIFILNNDDPVLREVKQEYKLPEKTISFGIKPDSDYRMEMIKADETGSTFSIN----DH 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   L G  Q+YNA ++  +   +G+D + V + L+K+ +   R E +  +     +  
Sbjct: 272 VFNIELLGHHQMYNATMSIIVAELMGLDYSDVAKGLKKIELTGMRNELILLDKF-HILND 330

Query: 361 DYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415
            Y     SL              R I V G     GD +      +GK I  +  D  + 
Sbjct: 331 SYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLA 390

Query: 416 TDDNPRSED 424
           T   P +E+
Sbjct: 391 T--GPLAEN 397


>gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria monocytogenes FSL F2-208]
          Length = 346

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 133/344 (38%), Gaps = 26/344 (7%)

Query: 7   IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           + K   E++  L  SI    +R+  I  V  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14  LKKTVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAR 73

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A                 ++ P+++V++T   L   A++   +    ++A+TG++
Sbjct: 74  EMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSN 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +    +  G  +          LT P    +A     ++ +    
Sbjct: 128 GKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIE 186

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  + +   +               TN+G  HI+Y  +++    AK+ +   L P     
Sbjct: 187 VLSKIAKPDIA------------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILI 234

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                  + + ++    N   R L+ G                +    I+    + +   
Sbjct: 235 Y-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           P+ GE  V+N + A      IGI+   +   L+ +     R E+
Sbjct: 290 PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEW 333


>gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 454

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 72/469 (15%), Positives = 171/469 (36%), Gaps = 38/469 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L      E++N        +   ++  V  DS+ I  G +FV I+  K DGH ++ +A+ 
Sbjct: 4   LQLNKLEEIVNGEG-LQESFHYIEMQGVCIDSKKITKGNLFVPIIRVK-DGHDYVKEAME 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A +   +Y             PI+ VD+T   L   A          ++ +TG++G
Sbjct: 62  KGAAASLWKKSYGDP------PKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V   +  I   +       G  ++              P+ + +            +
Sbjct: 116 KTMVKDIISTILSTTYRVHKTKGNLNSQ----------IGLPLTILEMKQD---TEFLIL 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  S  G  ++     +      T +G+ H++   +++    AK  + + L        
Sbjct: 163 EMGMSETGQIRNLAQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                   + ++ +  N                L       ++  V   +      +  P
Sbjct: 223 N-----GDEPLLSQNINMLGIEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+  ++N +V   +     +    + E L+++++   RF+F+   +    I   +  +
Sbjct: 278 LHGKHNIFNTIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNAS 337

Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +S++  ++ ++ +    + I+V G     G + +     +G++  + +   + T     
Sbjct: 338 PSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGEMLNEESIQYVFT----Y 393

Query: 422 SEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E  + +  E              N+ +     ++++ K+DV+++  KG
Sbjct: 394 GELAKIVAEEARKNYHTGKIKSFDNKAKIAEEVLKVITKKDVVLL--KG 440


>gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
 gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
          Length = 476

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 145/439 (33%), Gaps = 28/439 (6%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR +  G +F A+ G + DGH F+ QA+ +GA  +VV   Y++   S   R    ++ V
Sbjct: 36  DSRRVHPGDLFWALKGERFDGHDFVHQAVREGASGVVVQREYTI---SVENRPEIAVIAV 92

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           DNT + L   A+    +H   + A+TG+SGK++       I +    +    G       
Sbjct: 93  DNTLRALGDLAAWWRRQHTAKLAAITGSSGKTTAKEMTAAILEMENKTLKNPGN------ 146

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
               +      P+ L        S     V +  +  G      +       +  N+G  
Sbjct: 147 ----HNNLIGLPVTLL---KLDESHKRAVVEMGMNHKGEIARLTEIAGPDTAAILNVGMA 199

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H++          AK  L     P     +    D           +       +     
Sbjct: 200 HLERLGDMDGVAEAKTELIAHASPDTKIIL--NGDDAVLMKHATKFDRKFVTFGMKKGNH 257

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              +          +  +      +    P+ G   V NAL AA + +++      +   
Sbjct: 258 IHAVNIETKGLKGIRFDLRWSDDTWPIQLPVSGVHNVKNALAAAAIALSLKEPVENIARG 317

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG-- 391
           L     V GRF+ +        I   Y    ++LE  L +   +    GR+IV  G    
Sbjct: 318 LRNFKGVKGRFQCIPLEGDIILIDDTYNANPSALETALLSALKMVDRDGRLIVGLGDMLE 377

Query: 392 -GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G+         G +IA   A        +        I A +        E  + + A 
Sbjct: 378 LGEAAVSAHREAGSRIAESGASRLFFMGTHGEHVRNGAIAAGMPSNHVIISETHDELTA- 436

Query: 450 RTAIEMLNKQDVLVVAGKG 468
              I     +DV+ +  KG
Sbjct: 437 -NIIRKARPKDVIFL--KG 452


>gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
 gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis]
 gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
          Length = 472

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 93/447 (20%), Positives = 168/447 (37%), Gaps = 40/447 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DSR +  G IF  I  N+ DGH F  QA+A+GA A+V+    +        + + P
Sbjct: 28  GVSIDSRTLVKGDIFFCIK-NRLDGHDFAAQALARGAGALVI----AQNRLDDMKQLSAP 82

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++VV +  K L   A     +    I+AVTG+ GK++    ++++ Q  G     I   +
Sbjct: 83  LIVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKTTTKEALKKVLQTVGKVHANIASFN 142

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--LDGIKLIAGSF 209
                          P+ LA+           +   E   +  D+ R  +  +       
Sbjct: 143 NCWGV----------PLTLAQM-----PLDSDYGIFEIGMNHKDEIRSLVKLVCPHVALI 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T++   HI++ +  +   +AK  +FE L  K    +    D +S  V K       ++LS
Sbjct: 188 THIAAGHIEFFKNLEEIADAKAEIFEGLDNKGIAILNADSDFFSYLVQKAEQCNVKKILS 247

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G         K++C + N   +T+   G+D       PG   V N+L     C A+G D
Sbjct: 248 FGESDCADYQAKEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVIAACDAVGAD 307

Query: 329 SALVLEHLEKLHVVPGRFEFV----GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---S 381
            + +   L    +  GR                I   Y     S+   L  +        
Sbjct: 308 LSRIAPALSHFSLPQGRGTRYRLSLPDGEEFHLIDESYNANPVSMRAALNLLSIGPVGAC 367

Query: 382 GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           GR I V G   +     ++  R ++  I    A+   +       ++ + +  ++   + 
Sbjct: 368 GRRIAVLGDMLELGVYSEEFHRALVKPICTSGANPVFL-----FGKEMKFLAVDLSSYVE 422

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +  E +      ++K D+++V
Sbjct: 423 -VHYAEHVEEILPLIFTEISKGDLIIV 448


>gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 477

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/389 (18%), Positives = 136/389 (34%), Gaps = 25/389 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS---SAYSLQDFSAT 85
           +   +S DSR I+   +F+AI G   DGH FI  A+ QGA  I+     +  +    +  
Sbjct: 42  EFERISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGIISELSLAEVANTLGNIV 101

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             ++   + V NT   +   A     +  E ++ +TG+ GK++    +          + 
Sbjct: 102 FGTDFSFIKVPNTILAMHDIARGFRQRI-EKVIGITGSVGKTTTKEIL---------KTL 151

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +  +    +N +  P  +          +       +   S G            
Sbjct: 152 LKGYQTVSTFGNFNNEIGLPLSL-----FRAKKNDKFGIFEMAMRSKGEISQLCSIAMPD 206

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  T +   HI    + +    AK  + + +                 E++K       
Sbjct: 207 IGIITRIAESHIGLLGSMENIARAKGEILDFVDSAFLNFNCKYSRKIFGEMLKDKKGKPK 266

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V+  G +   +++K      +  ++ +S    +F    P     Q    L +  +   +
Sbjct: 267 EVIWFGKES-DLYIKSHEIFIHGSRLELSGRFGNFVLRAPNIFLPQFEPLLASVAVARFL 325

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGR 383
           G+D   + ++L+  H + GRF  +        I   Y  T  S    L+ I+     + R
Sbjct: 326 GLDWNEINDNLQGYHPLQGRF-LIKKLGDQIVIDDSYNATCTSFLKGLETIKSLKFGNRR 384

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDL 409
            I VFG     GD+ +     + K   +L
Sbjct: 385 KIFVFGDILEAGDKSRDLHKKVIKKIEEL 413


>gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis
           ATCC 367]
 gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis ATCC 367]
          Length = 461

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 146/422 (34%), Gaps = 37/422 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+Q        E+ + +       QW    +  V+ DSRH+Q G +F+ + G   DGH 
Sbjct: 1   MKMQ------LAEIAHAVGAINDFEQWGSVSVTSVAFDSRHLQPGGLFIPLTGEH-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  AI  GA A + +         A+  ++ P++ VD++ K L   A     K    ++
Sbjct: 54  FIQSAIDHGAVATLWARDL------ASAPADFPVIQVDDSLKALQTLAQYYLSKINPRVV 107

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +       +      +             P+   L   +    
Sbjct: 108 AVTGSNGKTTTKDMIAAVLSTQFNVTKTHANFNNEIGVPMTVLSMEPNTEMLVVEMGMDR 167

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +  +S   S                   T +G  HI++  T+    +AKM +   L 
Sbjct: 168 PGQLDFLSQLVS-------------PDLALITMIGEAHIEFFGTRDKIADAKMEITHGLS 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                            + +RA     R ++ G QG                   + +  
Sbjct: 215 DDGVFVFNG----DEPLLRERATELTQRQVTFGQQGTDDLFATDVTGTPTTTSFTTNQWP 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +  F  P+ G + V NAL A  + +   I      + L  + +   R E+V + S    +
Sbjct: 271 EVTFTIPMIGTYNVNNALAALSVAMLYRIRPESAKQALATVSLTENRAEWVTSASGAAIL 330

Query: 359 YVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIA 413
              Y     + + +L        +G+  VV G     GD+       +   I     D  
Sbjct: 331 SDVYNSNPTAAKEVLTAFSQTPVTGQRYVVLGDMLELGDQADAMHASLASAIDATKIDHV 390

Query: 414 IV 415
            +
Sbjct: 391 YL 392


>gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
 gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 136/402 (33%), Gaps = 39/402 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L       F E++  +    +        +  V +DSR ++ G +FV I G   DGH 
Sbjct: 1   MRLS------FEEIVRAVDGSAVAGAAPCGIVEGVGTDSRAVKPGSLFVCIPGETFDGHD 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NI 117
           F  +AI  GA A++VS                P+++V++T K L   A     +  E  +
Sbjct: 55  FAVKAIEAGAAALLVSRNPFDAVPP------VPLILVEDTVKALGKLAHCWRERLGETRV 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK++V   + Q+  R GL++      +            T         +   
Sbjct: 109 IGLTGTAGKTTVKELLAQVLSRRGLTAKTHMNLNNQIGLPLSMLAATGE--EAFWVMEAG 166

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S       + A            ++       N+G  H      +              
Sbjct: 167 ISHPNDMDELGA-----------ILEPDLALILNVGPGHAAGLGDRGTAHY--KSKLLAH 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L     AII AD        +          + G Q  +     V A  +K    + ++G
Sbjct: 214 LAPGGTAIISADYPDLAREARAVRQELVFFSTSGRQVDYRAAYVVPAGEDKGLFRLWLDG 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D   P  G F   N +  A +   +G+ +  +        +   RF     +  G  
Sbjct: 274 VSIDVEAPFRGAFGAENVIAVAAVAHRLGLGAEEIAAGFAGAALPKQRF---ACSRAGDW 330

Query: 358 IYVDYAHTSNS------LEMILKNIRTITSGRIIVVFGCGGD 393
           + +D ++ +N       LE   +         ++ V G  G+
Sbjct: 331 LVIDDSYNANPLSFSRMLEAAAEMAGDHADRPLVCVLGEMGE 372


>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
 gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
          Length = 441

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 160/448 (35%), Gaps = 47/448 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
               ++    +DSR ++ G +FVA+ G K DGH F+ +A  +GA  +VV     +++   
Sbjct: 16  GENCEVKRFVTDSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVEREVPVKEGKF 75

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV+++ K L   A          ++ + G++GK++    V  +    G   
Sbjct: 76  A-------LVVEDSLKALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSAVGKVC 128

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                         ++++  P  +      ++        + + AS+ G        +  
Sbjct: 129 KTPKN--------YNSQIGVPLSV-----ANFPEDCDFWVIEMGASAKGDVAKLTQLVIP 175

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T++G +H++              + E +                  V+       
Sbjct: 176 HVRVITSIGEEHLETFGCLDDVILGNGEILEGMR------------EDHVAVLPSYVAHC 223

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            RV      G+   L         + V   V+GK+     P+P    V N L + G+  A
Sbjct: 224 YRVERAVLFGEGTPLSAQDLKLTVEGVRFVVKGKEIF--LPVPSLALVENILCSLGVMEA 281

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+D   +L+ L     V GRF    +      I   Y     S++  ++++ ++  G  
Sbjct: 282 LGVDWTTLLDKLTTFRPVEGRF-RTLSVMGATIIDDSYNANPLSVKKAIESL-SLMEGHR 339

Query: 385 IVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           I V G     G++ +     +G+  A    D  I      R             G+   I
Sbjct: 340 IAVLGDMLELGEKAEELHRDVGRWCAEKRIDECIFYGYWMRY----AFHEAKRLGVS-TI 394

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++ E ++   + L +  +++V  KG
Sbjct: 395 YLEDKGEVVQHLRKKLREGTIILV--KG 420


>gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 514

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 162/496 (32%), Gaps = 58/496 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +L D+      EL++          +  +   V  DSR++ AG +F+ + G + DGH F 
Sbjct: 5   RLGDIAAITGGELVDGAE------PDTMVTGPVEFDSRNVSAGSLFICLPGARVDGHDFA 58

Query: 61  PQAIAQGAEA-----------IVVSSAYSLQDFSATIRSNTPILVVDNT------RKFLS 103
             A+ QGA A           I+V ++ + +   +       +L  DNT         LS
Sbjct: 59  GIAVDQGAVACLEGHRTGQPGILVDNSDADELSDSATSY---VLEADNTGEGQAVITALS 115

Query: 104 LFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             A     K    +   ++ VTG++GK+S    +  + +++G +    G          +
Sbjct: 116 KLARAHTKKAVEENGLTVIGVTGSAGKTSTKDLIASVLRQAGETVAPPGS--------FN 167

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N L  P       AL            + A + G   H         G+  N+G  HI  
Sbjct: 168 NELGHP-----YTALKVGEHTTYLVSELSARAIGNIAHLARIAPPRIGAVLNVGTAHIGE 222

Query: 220 HQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
             +++    A  ++            A++ ADD     +  R                  
Sbjct: 223 FGSKENIAQAKGELVEALPPAADGGVAVLNADDPLVIGMRNRTSARIVTFGMDNPATVRA 282

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-L 336
              ++ A+            K       + G  QVYNAL AA +  A G+D   + +   
Sbjct: 283 EDVELDAVARAAFTLCIEGEKARRIQLRVFGRHQVYNALAAAAVGHAAGLDCESIADALS 342

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCG- 391
           E +     R +          I   Y    +S+   +  +    SGR       V G   
Sbjct: 343 EHVSSSEYRMDVRTRADGVTVINDSYNANPDSMRAGIDALAFTASGREDCHSWAVLGSMG 402

Query: 392 --GDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             GD    +   + ++      D  +   DN        +  E               EA
Sbjct: 403 ELGDDSLTEHAALAEVLYNRHVDNLVAVGDNTAM---GALALEARRYGVNTEVVSTTQEA 459

Query: 449 IRTAIEMLNKQDVLVV 464
               +  L   DV++V
Sbjct: 460 ADIVLRHLKPGDVVLV 475


>gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
 gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
          Length = 457

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 168/476 (35%), Gaps = 49/476 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++  +    +         R++  V  DSR +Q  ++FVAI G   + H FI
Sbjct: 1   MK--NLTLENITKACKGVYHGDESKLGREVGGVVIDSRKVQKDYLFVAIDGENVNAHQFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I +GA  ++        DFS         ++V++T + L   A          ++ +
Sbjct: 59  PDTIEKGALCVISHEDLGDTDFS--------YILVESTGQALLDIAKLYRDSFDVKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +       IG  +          LT        +        
Sbjct: 111 TGSVGKTSTKEMIASVVAQKYKVHKTIGNFN----NEWGLPLTIFELNEDHQVAILEMGV 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                    SS                  TN+G  H+++ +T++     K ++ +++   
Sbjct: 167 NHFGEMRRLSSVA---------SPDICVITNIGVAHLEFFKTREGILQEKSKMIQDMKDG 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +      DD  S+    +        L    Q    +++ +        + +  E   F
Sbjct: 218 GTIIFNGDDDLLSQAGPIKGATPILFGLGDNCQFYADNIQPMGLRGTSCTIHLPDEY-SF 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + + PLPG   + NAL  A +   + + S  +   +E L  +PGR   + T+        
Sbjct: 277 ECVVPLPGTHMISNALAGAAVGYTLHLTSEEIKAGIEGLPSIPGRNNIIKTDRLIILDDC 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S++  +  +  +  GR + V    G  G+ ++     +G+ A       +   
Sbjct: 337 -YNANPVSMKAAIDVL-DMAIGRKVAVLGNMGELGNNEKVLHREVGEYAAAHGIDLVCGI 394

Query: 418 DNPRSEDPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +        +  E++ G            F  K + ++A++  I      D ++V
Sbjct: 395 GH--------LAKELVDGATNGSSSTRGLWFENKADFLDAMKDLI---KDGDNVLV 439


>gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 350

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 7/227 (3%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR ++ G ++VAI G + DGH FI +A+++GA  +V     SL D       + P + V 
Sbjct: 6   SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVP----PDVPYVRVT 61

Query: 97  NTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           + R+  S  ++R+YG    +   +         +SV      +              +  
Sbjct: 62  SARRAASALSNRVYGFPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSVFNET 121

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                   LTT     L +AL  +   G TH  +E SSHG+ QHR   +      FTNL 
Sbjct: 122 GLRTVPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFTNLT 181

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           R+H+D+H + + Y  AK RLF  L  ++  AI+  DD Y+  + +  
Sbjct: 182 REHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAENC 228



 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/110 (38%), Positives = 62/110 (56%), Gaps = 6/110 (5%)

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-----EK 442
               G+RD+GKRP MG IA  LAD  ++T D+  SEDPE+I  EI+ G            
Sbjct: 242 VRGRGERDRGKRPEMGAIAASLADHVLITTDSSYSEDPERIANEILAGAQRVHRARCDVV 301

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            +R +AI  A+   N +DV+++ G+GHE+  +V  G +    D D++RE 
Sbjct: 302 LDRAQAIERAVIEANDEDVILITGRGHESFQVVG-GLRLEQTDADMVREA 350


>gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
 gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
          Length = 465

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 135/389 (34%), Gaps = 22/389 (5%)

Query: 6   LIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+   +       +W +R+I  V+ D+R +    +FV ++GN  DGH FI +A
Sbjct: 2   MISLTVKEIAMAVGAINDTSKWSDREITSVNFDTRKLVKDSLFVPLLGNN-DGHNFILKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA   + S    L+D    + +  PI+ V++T K L   A     K    ++ +TG+
Sbjct: 61  VENGAAVSLWSKP--LKDLPLELENEFPIVQVNDTLKALQDLAKFYLTKVNPKVVGITGS 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++       +           G  +                I L   +  +  +   
Sbjct: 119 NGKTTTKDMADAVLSSQYRVHKTQGNFNNH--------------IGLPITILEMPIETEV 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +     S   +   L  +     +   +  +        +A            L +   
Sbjct: 165 VILEMGMSRAGEIKVLSDLAKPDVAIITMIGESHIEFFGSRAGIADAKMEICSGLKENGV 224

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I   ++   +E +     +  +      +     L         Q   ++ E  D    
Sbjct: 225 LIYPGEEPLLQERVAVLKGSQLKTFGTSPENDLYPLN--IDAQMNQTSFVTNERPDLVVS 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G + V NAL A    + +GI        L +  +   R E++   +    +   Y 
Sbjct: 283 LPVLGTYNVNNALAALMAGMTLGISIEKSAPKLAQFQLTKNRTEWLKGINESSILNDAYN 342

Query: 364 HTSNSLEMILKNIRTI-TSGRIIVVFGCG 391
               +++ +L N  T   +G+ IVV G  
Sbjct: 343 ANPTAMKAVLDNFSTFTNTGKKIVVLGDM 371


>gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
 gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
          Length = 462

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 76/443 (17%), Positives = 156/443 (35%), Gaps = 33/443 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  VS D+R +    +F+ + G + DGH +I QAI QGA+A+             T    
Sbjct: 27  IESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQGAKAVFWGR------QDQTPPEG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              + VD+  +     A     K   N++ +TG+SGK++       +           G 
Sbjct: 80  ICAIWVDDPLEAFQELAKWYLEKIQPNVIGITGSSGKTTTKDMTAAVLASRYRVYKTQGN 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                      L          + +  S  G  +      K    + 
Sbjct: 140 FNN-------------DIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKPSVAAI 186

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  H++   ++     AK+ + + L  K S      +    +++ +       +VL 
Sbjct: 187 TLIGESHMENLGSRAGIAKAKLEILKGLREKGSIIFPANEPLLEQQLEEMQAEEHFKVLP 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G     +   +   +     +   V+        P+ G + V NAL A  + +  G+  
Sbjct: 247 FGEGSSSVIQAENIQLFEDHTIFDLVKPSKQSVQLPVLGAYNVNNALAALQVGLECGVPL 306

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
              +E +++  +   R ++V        +   Y  +  +++ ++++  ++ T GR IVV 
Sbjct: 307 EQAIEAIQQFELTKNRTQWVDGIHGSKILNDAYNASPIAMKSVIQSFTSVATKGRKIVVL 366

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDD----NPRSEDPEKIRAEIIH--GIPGFIEK 442
           G   +  +  + +   I+       +  +D        E+   +   +            
Sbjct: 367 GDIRELGEQSKALHASISE-----VMFPEDIQEVYLYGEEMSALFEALKTRFEASHLHYV 421

Query: 443 GNRIEA-IRTAIEMLNKQDVLVV 464
            N  +A IR   E L + D ++V
Sbjct: 422 ENDKQALIRLLEEELRQNDQVLV 444


>gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 457

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 144/377 (38%), Gaps = 26/377 (6%)

Query: 8   YKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
            K   E++  L  SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+ QA  
Sbjct: 2   KKTVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQARE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A                 ++ P+++V++T   L   A +   +    ++A+TG++G
Sbjct: 62  MGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAMKYMQEVRPKVIAITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + S    +  G  +          LT P    +A     ++ +    V
Sbjct: 116 KTTTKDIMAAIVETSYKVHYTGGNFNNHIGLPY-TILTMPEDTEVAVLEMGMNHRHEIEV 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + +   +               TN+G  HI+Y  ++Q    AK+ +   L P      
Sbjct: 175 LSKIAKPDIA------------IITNIGEAHIEYLGSRQEIAKAKLEITAGLNPSGILIY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                 Y + ++    +   R L+ G   +            +    ++    D +   P
Sbjct: 223 -----PYEETLLLSQIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWEPDLEIFVP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  V+N + A      IGI+   +   L+ +     R E++   +    +   Y  +
Sbjct: 278 IIGEHNVFNTMAAMLAAREIGIEGKKIQTALKNMERSKSRLEWLTAKNGARILNDAYNSS 337

Query: 366 SNSLEMILKNIRTITSG 382
             +L+ +LK    + S 
Sbjct: 338 PTALQTVLKTFMHMDSK 354


>gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 469

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 159/477 (33%), Gaps = 45/477 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E++   ++      E  +      DSR  + G +FVA+ G + DGH +   A+
Sbjct: 4   MLLSTIAEVVGG-TLADAPDPEALVTAPAVFDSRKAEPGALFVALPGEQADGHDYALSAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTG 122
             GA A++ +                P ++VD+           L         I+A+TG
Sbjct: 63  KAGAAAVLATRPV-----------GVPAILVDDVLAAFGRLGRHLVAHTLVDTKIVAITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+   +G               + +N +  P  I +A       S   
Sbjct: 112 SAGKTSTKDLIAQLLPAAGRVVAT--------PESFNNEIGLPLTISMADP-----STDY 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  +             TN+G  HI     +     A      E LP   
Sbjct: 159 LVLEMGARGIGHIRDLTRIAPPHISVVTNVGTAHIGEFGGRDKIAVA-KGEIVEALPASG 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +  R                      V A   +   T++        
Sbjct: 218 LAVLNADDPLVLAMAARTTARVSSFGLSDEATVRATDVTVDAFG-RATYTLTTPEGSAPV 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVD 361
              L G  QV N+L AA +    G+  A + + L         R E          +   
Sbjct: 277 SLQLVGAPQVSNSLAAAAVAREAGLSVADIADLLSAATARSRWRMEVSARADGVTVVNDA 336

Query: 362 YAHTSNSLEMILKNIRTITSG---RIIVVFGCGGDRDQGKRPI---MGKIALDL-ADIAI 414
           Y    +S+   L+ + T+  G   R I V G   +     R     +G+IA  L  D  +
Sbjct: 337 YNANPDSMRSSLEALATMARGPEQRAIAVLGKMNELGSESRAAHEGIGRIAAALDLDRIV 396

Query: 415 VTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                   E+   +R            +   ++  A++   + L   DV++V A +G
Sbjct: 397 FV----GGEEAGWMRQAAAAAGAGGRAVHVPDQDAALQHLSDTLRAGDVVLVKASRG 449


>gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 458

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 98/448 (21%), Positives = 166/448 (37%), Gaps = 40/448 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA+ G   DGH F+ +A  QGA   +VS A +           
Sbjct: 24  VSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKAFGQGAAGAIVSEAIAQ---------- 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V ++   L   A     +    ++ VTG+ GK+     +     R          
Sbjct: 74  -PHVLVPDSAAALEALARASRARMQGKVVGVTGSVGKTGTKEALFHALDRIC-------- 124

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +    +        P+ L++     +        +  +  G        ++      
Sbjct: 125 PGEVHRSVKSYNNHVGVPLSLSRMPRESA---YGVFEMGMNHAGELAALTRQVRPHVAIV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   HI++  T++    AK  +FE  L     A+I  D  +   +  +A     R+L+
Sbjct: 182 TAIAPAHIEFFGTEEKIAEAKAEIFEG-LEPGGTAVIPYDSPHVATLYAKAEKHAARILT 240

Query: 270 VGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+         + V A      VT ++ G +  F    PGE  V NAL       A+G 
Sbjct: 241 FGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVSNALAVLAAVEAVGG 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384
           D A     L ++  +PGR E       GG   +    Y     S+   LK +    +GR 
Sbjct: 301 DLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSMAATLKQLGREQAGRR 360

Query: 385 IVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           I V G     GDR +     + + +     D AI+  D        +  AE + G+  F 
Sbjct: 361 IAVLGGMRELGDRSRDLHAGLVEPLKGSHVDYAILVGD------EMQPLAEALGGVIAFD 414

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +  +A       +   D ++V  KG
Sbjct: 415 HVPDAAKATDLIQGEMRAGDAILV--KG 440


>gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida F1]
 gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas putida F1]
          Length = 455

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 131/416 (31%), Gaps = 31/416 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L        +    I      +     VS DSR + AG +FVA+ G + DGH ++  
Sbjct: 2   LKPLSLSQLTTALKGQHI----GGDATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLAD 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             A+GA A +V    +          + P L+V   R  L    +       + ++A+TG
Sbjct: 58  VKAKGAVAALVEREVA--------GVDLPQLLVKGCRVALGQLGALNRAAFDKPVVAITG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   +  I +  GL     G  +             P                 
Sbjct: 110 SSGKTTVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPE-------------HSA 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS  G +     G+        N                        E L +  
Sbjct: 157 AVIELGASRIG-EIRYTVGLTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGEGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFD 301
            AI+  DD        RA        +        H   +          T+   G+   
Sbjct: 216 IAILNLDDKAFDIWKARAGAHKVVSFARSNPKADFHASDIGRDARGCPSFTLHGAGETVA 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + GE  V NAL AA    A+G+  + +   L  +  V GR       +    I   
Sbjct: 276 VQLNVLGEHNVSNALAAAAAAHAVGLSLSGIAAGLAAVQPVKGRTVAQIAPNGVRVIDDS 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ---GKRPIMGKIALDLADIAI 414
           Y     S+   +  +    SGR ++V G  G+  Q        +G  A    D   
Sbjct: 336 YNANPTSMCAAIDILAGF-SGRTVLVLGDIGELGQWAEEGHRQVGDYARGKVDALY 390


>gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
 gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
          Length = 453

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 139/421 (33%), Gaps = 37/421 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK    + KD  +++N   I  ++   ++I  ++ DSR ++ G +F+  +G   DGH +I
Sbjct: 1   MK---YLVKDLEQILNAKKINIVE--NKEITGIAIDSRKVKEGDLFIPFLGENVDGHNYI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA A +               S+  I+ V+++   +   A          I+A+
Sbjct: 56  ESAFEKGAAASLS--------LKEDFTSDNNIIYVEDSYVAIQALAKHYLDSLNAKIIAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +         G          +N L  P  I  A   S +   
Sbjct: 108 TGSNGKTTTKDIITGLLETKFKVHKTQGN--------FNNELGVPITILAAPEDSEIL-- 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A   G        ++      TN+G  HI++  +++    AK  +   +   
Sbjct: 158 ---VLEMGADGFGQLDFLSKLVEPDYTVITNIGESHIEFFGSREGIAKAKFEITNGMKKD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D    + +    N G            I L+      +     +++  + F
Sbjct: 215 GFFVY--NGDEVLLKDLVDKSNIGATSCGENDYNNII-LENYTITRDHIDFKLNLSDEKF 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                            A    + + ID  +     +   +   R E +        I  
Sbjct: 272 TTKLKGKHNLFNIMFATAIAEKLGLSID-EIRKAIEKTSEITHMRLESIPYGKDSLIIND 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLA---DIA 413
            Y  +  S++  +  +          +        G ++      +G+   + +   D+ 
Sbjct: 331 AYNASPTSMKASVDVVSGFDDFDYKTLVLGSMFELGSKEVQYHSEVGEYISNNSKDIDLV 390

Query: 414 I 414
           I
Sbjct: 391 I 391


>gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 455

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 141/417 (33%), Gaps = 36/417 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           KL +L       LI           +   + VS DSR I  G +FVA+ G + DGH ++ 
Sbjct: 6   KLSELTSALNARLI---------AADATFDGVSIDSRAIAPGQLFVALAGPRFDGHDYLN 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +  A+GA A +V              S  P L+V++TR+ L    +     +   + A+T
Sbjct: 57  EVAAKGAVAALVEREV--------TNSTLPQLLVNDTRQALGQLGALNRAAYGNPVAAIT 108

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++V   +  I +  G      G  +             P                
Sbjct: 109 GSSGKTTVKEMLASILRTRGPVLATRGNLNNDLGVPLTLLELAPE-------------HS 155

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G   + +   K       N G  H+      +    AK  + E  L  +
Sbjct: 156 AAVIELGASRLGEIAYTVGMTKPHVAVLNNAGTAHVGEFGGPEKIVEAKGEIIEG-LDAD 214

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             A++  DD   +    RA        ++       +   +           +       
Sbjct: 215 GVAVLNLDDKAFEIWKTRAGERKVLTFALSNLAANFYASDLDRDARGCPAFNLHSPDGAE 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I  
Sbjct: 275 RVQLNLLGTHNVANALAAAAAAHALGVSLPGIVAGLNAVQPVKGRSVAQLASNGMRVIDD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIALDLADIAI 414
            Y    +S+   +  +    SGR ++V G  G+     Q     +G  A    D   
Sbjct: 335 TYNANPSSMCAAVDILAGF-SGRTVLVLGDIGELGEWAQQGHHDVGAYARGKVDALY 390


>gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
 gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
          Length = 452

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 90/472 (19%), Positives = 174/472 (36%), Gaps = 40/472 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++ ++ K++  L+  + I       +K+  V+ DSR +  G +F A+ GN+  GHLF+
Sbjct: 1   MVMRPILLKEWSSLLLDIDIPCSG---KKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A VV+S Y   D+         +L V + R+ L              ++ +
Sbjct: 58  KQAAQSGAVAAVVASDYRGPDY------GLQLLHVADPREALRAAGRTQGALFHGEVIGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  SF QQ+                 S  + +++LT P  I  A         
Sbjct: 112 TGSVGKTTTKSFTQQLLSPFYKV--------FASPKSYNSQLTLPLSILTADGDEDFL-- 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S     +  LD I+   G  T++   H      + A   A+ +     L +
Sbjct: 162 ---VLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVDKGAQGIAEEKSLL--LER 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++  D ++    MK+   A     S+  +    + + +    + + V IS    D 
Sbjct: 217 CGIHLLPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI----HSEGVLISAPDGDI 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +     P      N ++A  L     +    + +  + L +   RFE    N     I  
Sbjct: 273 ELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSMRFEQQEHNGI-RIIND 331

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y  + +++   L  +      G+ + + G     G         + + A+  A +    
Sbjct: 332 AYNASPDAMLAALDAVPIPSEGGKTVFILGHMAELGRYSDECHIAVARKAVTKAHVVFFV 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E    +R  +          G+  E +     ++ + DV+++  KG
Sbjct: 392 -----GEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRGDVVLL--KG 436


>gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
 gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
          Length = 466

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 146/389 (37%), Gaps = 30/389 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +    V +DSR ++ G +FVA+ G + D H FI   +A+GA A++VS             
Sbjct: 27  QAFARVHTDSRTVEPGDLFVALKGERFDAHDFIADVVARGAVAVLVSRDVD--------- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P +V  +TR  L    +    +     +AVTG++GK++V   +  I   +     ++
Sbjct: 78  AGVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRL 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVEASSHGLDQHRLDGIK 203
                +++           P+ + +  +         G+ H        G+ Q  +    
Sbjct: 138 ATGGNLNNDI-------GLPLTVLRLRATHRLAVLELGMNHPGETVYLAGIAQPTV---- 186

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE-VMKRAHN 262
                 TN  R+H ++  + +A  +        L           +++  +   + RA  
Sbjct: 187 ---AVVTNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDEESGGQHAAIWRAAA 243

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              RVLS G  G+      V  +   Q + +   G  F+    L G   V NAL A    
Sbjct: 244 GTRRVLSFGTAGEADVQATVALVDGVQVMQVRAPGHAFEVHLGLLGTHNVRNALAATACA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G+    + + L     V GR +   T      I   Y    +S+   +  +    + 
Sbjct: 304 LAAGVQVPAIQQGLAAFKAVKGRLQVKHTPGGTVVIDDTYNANPDSMRAAIDVLAGFAAP 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDL 409
           R++V+   G  GD+       +G  A  L
Sbjct: 364 RLLVIGDMGEVGDQGPAFHTEIGGYAQAL 392


>gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 463

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 151/454 (33%), Gaps = 43/454 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  V+ DSR IQ G +F A+ G + DGH ++  A  +GA   VV S          
Sbjct: 20  ADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVDAAFKRGAAGAVVMSPVPY------ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P ++VD++ + L   A     ++   I+ +TG+ GK+S    ++   +R      
Sbjct: 74  -----PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALERMAPEKV 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                S  +       L            + +  + +  +     +H  +   L  +   
Sbjct: 129 HYSLKSYNNHVGVPLSL------------ARMPEESLFGIFEMGMNHAGELSDLTKLVQP 176

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG- 264
             +               +           E L     AII  D  Y   +  +      
Sbjct: 177 DVALITAIAPAHAAFFADETAIAEAKSEIFEGLLSGGIAIIPHDSPYRDLLTAKVQEKKA 236

Query: 265 -CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R    G          V     +  VT S+  +   F   +  E+ + NA+    +  
Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAMAVLAVVD 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNI-RTI 379
           A+G D  L    L  +    GR +        G   V    Y     S+   +K +    
Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIKALENEP 356

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHG 435
              R IV+ G   +  Q        +A  L+    D  ++       ++   +   +   
Sbjct: 357 KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLV-----GQEMAALEESLAGK 411

Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I    IEK ++ EA+    E+L   D+L+V  KG
Sbjct: 412 IACDRIEKADQAEALLD--EILKADDILLV--KG 441


>gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 451

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 178/474 (37%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E++N   +        +I+ V  DS++++ G +FV I+  K +GH ++
Sbjct: 1   MNLKKL-----EEVVNGEGLQESFHL-IEIHGVCIDSKNMKEGNLFVPIIRMK-NGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++              P+ + +        
Sbjct: 108 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ----------IGLPLTILEMERD---T 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G  ++     +      T +G+ H++   +++    AK  + + L   
Sbjct: 155 EFLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSREEIAKAKFEIIDGLNDD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + ++ +  N                L       ++  V   +     
Sbjct: 215 GLFLYN-----GDEPLLSQNINMLSIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNNTKI 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  + NA+V   +     + +  + E L+++++   RF+F+   +    I  
Sbjct: 270 QYDIPLHGKHNILNAIVGIAVGQFYKVSTEKIQEALQQINITQMRFQFLTAKTGFTIIND 329

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + ++V G     G + +     +GK+  + +   + T
Sbjct: 330 AWNASPSSMKAAIETLQKLNAYKKKMIVIGDMLELGKKGETYHREIGKMLNEKSIQYVFT 389

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  + +  E              N+ E     ++++ + DV+++  KG
Sbjct: 390 ----YGELAKIVAEEARKNYDAGKVQSFDNKAEIAEEVLKIITQNDVVLL--KG 437


>gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37]
          Length = 447

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 94/465 (20%), Positives = 154/465 (33%), Gaps = 40/465 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+   +S          +      D R  + G +FVA  G   DGH +  QA 
Sbjct: 1   MIPLSLDEIAAVVSGTVEGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQAG 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
             GA A++ S             +  P +VV++ R  L   A+ +  +  +   ++ +TG
Sbjct: 61  RAGAVAVLGSR-----------PTTLPTVVVEDARAALQALAAHVVARLRDRLTVVGLTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +   +G +   IG  +           TTP   +L            
Sbjct: 110 SQGKTSTKDLLAAVLSHTGSTVATIGSLNNELGVPLTMLRTTPDTRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G        + L      N+G+ HI    +++A   AK  L  + L    
Sbjct: 158 -VLEMGARGIGHIAELTALVALDVAVVLNVGQAHIGEFGSREAIATAKAEL-LQGLVPGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+ ADD     +                      L        +   T+         
Sbjct: 216 TAILNADDPRVLVMRALTDGPAL-TFGRAEHAHVRVLDLALDRLGRPAFTLRTADASAPV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G  Q  NA  AA   +A GI   +    L    +   R E  G +     +   Y
Sbjct: 275 ALPLVGAHQALNASAAAAAGLAAGIPLDVTAATLATASLSKWRMELRGLSGGVSLLNDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
               +S    L  +  I +GR I V G     GD  + +   +G+ A   AD+ +     
Sbjct: 335 NANPDSTRAALDALAAIEAGRRIAVLGEMRELGDDSEAEHRAIGEYAARAADLVVAV--- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E    I      G    +   +   A+      L   DV++V
Sbjct: 392 --GEAAAPIAE--GAG-DRAVALADNDAAVDWLRRALTAGDVVLV 431


>gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 511

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 154/478 (32%), Gaps = 50/478 (10%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           DL  K+  +++   S+  +   + ++   V  DSR +  G +F+   G K DGH F  +A
Sbjct: 3   DLTLKEIADIVGG-SLDSVDDPDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAEKA 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNT------PILVVDN-------TRKFLSLFASR-- 108
           I QGA A++ +    +                   +  ++         + LS  A    
Sbjct: 62  IEQGAVAVLAAREVGVPAIVVQPTGRIEGDGANADIYANDADGSAAAVVRALSDLAHYVT 121

Query: 109 --LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
             L  +H  +I+ VTG++GK+S    +  I +  G +    G  +               
Sbjct: 122 TKLTSEHDLSIIGVTGSAGKTSTKDLIATILRNDGETVAPPGSFNNEIGHPYTALRCDVD 181

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                               + A   G  +H  D      G   N+G  H+    +++  
Sbjct: 182 -------------TKYLVAELSARGIGHIKHLTDIATPRIGVVLNVGTAHLGEFGSRENI 228

Query: 227 FNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ--GKFIHLKKV 282
             A  ++      + +   A++ ADD +   + KR         S      G   +   +
Sbjct: 229 AIAKGELVESLPDVSEGGVAVLNADDPFVAAMAKRTTAKVVTYSSANPPAVGADYYATNI 288

Query: 283 CAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              +         +   K       + G  QV N+L AA   I  G+    V + L    
Sbjct: 289 TLDNVARPSFTLHAPGVKPVSVTLQVFGVHQVSNSLAAAAAAIEAGLSVESVADSLSGHR 348

Query: 341 V-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCG---G 392
                R +          I   Y    +S+   +  +   TSGR     I V G     G
Sbjct: 349 NASAHRMDVHTRADGVTIINDSYNANPDSMRAAIAALGYTTSGRPDARSIAVLGEMGELG 408

Query: 393 DRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
           D    +   +G           IV  +    E      AE   GI   +   +  EAI
Sbjct: 409 DDAIEEHYSLGAELAKFDVHTLIVVGETANGEAMASAAAE--RGI-NTMVSRDIDEAI 463


>gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
          Length = 446

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 141/409 (34%), Gaps = 36/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+ A          ++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNRAV---------KTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G         +             P               
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE  L  
Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++     AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRPLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR            I  
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
            Y     S+   +  +     G  ++V G     G   +     +GK A
Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377


>gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 454

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 157/421 (37%), Gaps = 35/421 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L  K   EL N +     ++ +  +  +S+D+R IQ   +F+A+ G+  DG  +I
Sbjct: 1   MLTRNL--KTITELTNTI--INEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV+  Y   +       + P++ VDNT++F+   A          ++A+
Sbjct: 57  EMAFEKGASCCVVNRDYRNIN-------DYPVIEVDNTKEFMMDLARGYINSLKCKVIAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +                +       T                 
Sbjct: 110 TGSNGKTTTKDIMSSLLKEKYKVVKTQKN----YNNEIGLSKTIFDIDD---------DT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +   + G  +   +         TN+G  H+   +T++    AK     E L +
Sbjct: 157 EVAVLEMGTENFGEIRQLTNIAHPDIAMITNIGDSHLLNLKTKENIARAKF-EILEGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I+  DD+  +EV +        +           ++ + A       +I+    D 
Sbjct: 216 DGIFILNNDDSILREVKQEYKLPEKTITFGIKPDSDYRMEMIKADETGSTFSIN----DH 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   L G  Q+YNA ++  +   +G+D + + + L+ + +   R E +  +     +  
Sbjct: 272 VFNIELLGHHQMYNATMSIIVAELMGLDYSDIAKGLKNIELTGMRNELILLDKF-HILND 330

Query: 361 DYAHTSNSLEMI-LKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415
            Y     SL              R I V G     GD +      +GK I  +  D  + 
Sbjct: 331 SYKSNPQSLTSCLETAYGLHGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLA 390

Query: 416 T 416
           T
Sbjct: 391 T 391


>gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 458

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 94/452 (20%), Positives = 154/452 (34%), Gaps = 44/452 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            ++  V+ DSR    G +FVA+ G   DGH F P A+  GA A++ +             
Sbjct: 24  TQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSAVEAGAVAVLAAR-----------P 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              P +VV++    L  +A          +++AVTG+SGK+S    + Q+  R+G + F 
Sbjct: 73  LGLPAVVVEDPLAALGAWARAHVEALADLDVIAVTGSSGKTSTKDLIAQVLDRAGATVFT 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +          LT              +      V + A   G   +         
Sbjct: 133 QGSFN----NEIGLPLTALEA---------TADTRHLVVEMGARGQGHIAYLTGITPPRI 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           G+  N+G  H            A  ++        +   A++ ADD     +  R     
Sbjct: 180 GAVLNVGTAHAGEFGGPDMTARAKGELVEALPAAAEGGVAVLNADDPRVAAMSARTKAEV 239

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                      +     +     +   T+            + GE QV NAL AA +  A
Sbjct: 240 VTFGVERAADVYATGVALDGRG-RASFTLHTPAGQAPVRLQVVGEHQVPNALAAAAVAGA 298

Query: 325 IGIDSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
            G+D   +   L   + V  GR            +   Y   ++S    L+ +  +    
Sbjct: 299 AGMDVEQIGGALTAAVPVSEGRMRVTERPDGVTVVDDAYNANTDSTSAALRALAHLGRES 358

Query: 382 -GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            GR I + G     GD  + +   +G +A  L    +V     R+E    +  E     P
Sbjct: 359 GGRTIALLGEMRELGDGSEREHRRVGALAASLGVDVLVAVG--RAE-AHALADE---YGP 412

Query: 438 GFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           G     +R  A        L   DV++V  KG
Sbjct: 413 GGQVVADRDAAGEWLERYGLRAGDVVLV--KG 442


>gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 463

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 151/454 (33%), Gaps = 43/454 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  +  V+ DSR IQ G +F A+ G + DGH ++  A  +GA   VV S          
Sbjct: 20  ADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVEAAFKRGAAGAVVMSPVPY------ 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P ++VD++ + L   A     ++   I+ +TG+ GK+S    ++   +R      
Sbjct: 74  -----PHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKTSTKESLRLALERMAPEKV 128

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                S  +       L            + +  + +  +     +H  +   L  +   
Sbjct: 129 HYSLKSYNNHVGVPLSL------------ARMPEESLFGIFEMGMNHAGELSDLTKLVQP 176

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG- 264
             +               +           E L     AII  D  Y   +  +A     
Sbjct: 177 DVALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPYRDLLTAKAQEKKA 236

Query: 265 -CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R    G          V     +  VT S+  +   F   +  E  + NA+    +  
Sbjct: 237 EIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMAVLAVVD 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNI-RTI 379
           A+G D  L    L  +    GR +        G   V    Y     S+   +K +    
Sbjct: 297 AVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIKALENEP 356

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHG 435
              R IV+ G   +  Q        +A  L+    D  ++       ++   +   +   
Sbjct: 357 KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLV-----GQEMAALEESLAGK 411

Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I    IEK ++ EA+    E+L   D+L+V  KG
Sbjct: 412 IACDRIEKADQAEALLD--EILKADDILLV--KG 441


>gi|302853199|ref|XP_002958116.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
           nagariensis]
 gi|300256584|gb|EFJ40847.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
           nagariensis]
          Length = 696

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 121/314 (38%), Gaps = 19/314 (6%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           + G+ +  G   +   +         A         +   P+    +I ADD  ++E+++
Sbjct: 341 VTGLSVHMGVPASEQPEDRADEVRAAAELAMITLERKLTQPEMQVLVINADDPATEELLR 400

Query: 259 R-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           R  +        +      + ++       + +V I         +  L G    YN + 
Sbjct: 401 RLNNAVPVVTFGMSNSRADVFVESYKNNIWETEVIIRTPTGRLQIITNLLGRHNAYNLVA 460

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A    +A+       +    +   +PGR E +    +   + VD A +  +L  +L  +R
Sbjct: 461 AVATGVALKAPL-QSIVAGIEAVEIPGRSEVI-DEGQEFSVVVDAAQSPETLASMLDALR 518

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---------- 427
              + +I  VFGC G+ D   RP MG +A   +D  IVT++NPR EDP K          
Sbjct: 519 RGGARQIFTVFGCSGNEDPSIRPKMGAVAHAKSDYVIVTNENPRLEDPAKDQGRTPLWFE 578

Query: 428 -IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE----KKM 482
               +       +I   +R  AIR AI     +DV+++AGKGH+      + +    +  
Sbjct: 579 PYLQKAQRDNKRYI-MEDRYSAIRAAIGTAGPEDVVLLAGKGHQDWVEHADTDGNILRGW 637

Query: 483 SVDCDIIREILGLI 496
             D    R  L  +
Sbjct: 638 LDDRVEARNALSKL 651



 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 13/152 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIV 72
           +++        + +  +  + S+   +  G IFV   G   +D    I  A+ QGA  IV
Sbjct: 68  VMDAALWLASSYPDVLVTGLQSNPHLVVPGDIFVLHPGLIPDDDLDAISVAVEQGATVIV 127

Query: 73  V----------SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT- 121
                        A      +  +    P++ V+++    +  A+  Y     N++ +  
Sbjct: 128 APRVKAEDPGLDPAPDPVGLAGILPDEVPLIRVEDSLAMGARLAAAFYDLPSANMVTIGV 187

Query: 122 -GTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            G  GK++ A  ++ + +  G +   +     
Sbjct: 188 MGLLGKTTTAWLIRGLLEELGQTVGLVSTIEH 219


>gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 457

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/445 (18%), Positives = 159/445 (35%), Gaps = 41/445 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSRH+    +F A+ G K DG+LF P+A ++ A A+VVS           +  +  
Sbjct: 29  GVCTDSRHLPPHAVFFALGGEKFDGNLFAPEA-SRTAAAVVVSR------VEEGMDPSCA 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +++V++T + L   AS    +    ++ +TG++GK+S       +  +   +    G  +
Sbjct: 82  VILVEDTLEALQKLASWWRSELTLTVIGLTGSNGKTSTKDLTASVLSQGFRTIATQGNLN 141

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                       TPS                    +  +  G      +  +   G  T+
Sbjct: 142 NHIGVPLSILRATPS-------------DEAAVWEMGMNHSGELAPLCEMTRPKIGIITS 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++Y  +++     K  L   L            D           +     +  G
Sbjct: 189 IGTSHMEYLGSRENIAREKCTLARCLPEDGFMIFPADCDYADM----IRQSTRAACIDCG 244

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                +  +   +  N  +  +S+      +   P+ G   V NAL+AA    A G+   
Sbjct: 245 IGAGTVRAENPVSTENGTRFILSIPDFCREEVELPVHGRHMVTNALLAAAAGWAAGLAKE 304

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVF 388
            +   L +  +  GR     T   G  +  D Y    +S++  L  +  +  +GR   V 
Sbjct: 305 QIASGLNQARLTGGRL--HCTRINGILVVDDTYNANPDSMQAALHTVAGLSCTGRRFAVL 362

Query: 389 GCGGD---RDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKG 443
           G  G+     +    ++G+ A +L  D  +         D  +I   I  +     +  G
Sbjct: 363 GRMGELGAFSEEGHVLVGRTAEELRLDCVV-----SVGTDAARITDAISPNAFTQSLHFG 417

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  EA           D+++   KG
Sbjct: 418 SAEEAAEWLRSHTAPGDIVLF--KG 440


>gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
 gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
          Length = 446

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 36/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G         +             P               
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE  L  
Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR            I  
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
            Y     S+   +  +     G  ++V G     G   +     +GK A
Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377


>gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
 gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
          Length = 452

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/463 (16%), Positives = 173/463 (37%), Gaps = 37/463 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           + + +  + +N   +     ++   N+VS D+R +  G IF+AI G   +G+ FI  A+ 
Sbjct: 1   MTFNEIAKAVNG-KVILRGSKDV-FNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQ 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA   +V   +  +D   + + +  IL+V++T+K L   A          ++A+TG++G
Sbjct: 59  KGAALCIVDEIHFEKD---SFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S       + +         G          +N +  P             S  V  +
Sbjct: 116 KTSTKDITASVLRSKFRVFKTSGN--------FNNEIGLP-----LMIFKLDKSYEVAVL 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +      +     +      TN+G  HI+  ++++    AK+ + +         +
Sbjct: 163 EMGMNHFNEIHNMAKAARPDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIV 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              +D     + K    +   + +   +   ++ + +C      +  +  E      +  
Sbjct: 223 NGDND----LLKKHEFKSINVLKTSLNKEGNLNAENLCLHEGNSEFEVQGE----KLVLN 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  + NA+++    + +G+    + + L+ L +   R + V        +   Y  +
Sbjct: 275 MPGKHNIENAMLSIAAALKLGLTFEEIRKGLKDLELTAMRLDIV-NGENIVIVDDSYNAS 333

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNPR 421
            +S+   +   + +   R I V G     G++       +G  A  +  D  +V      
Sbjct: 334 PDSMIAAIDVTKNLKGNRRIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVG---- 389

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  K   +       F E     E ++     + K D+ ++
Sbjct: 390 --EFSKAYLDGYKDKENFSEFETNEELLKFVKTDIRKGDIFLI 430


>gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
 gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
          Length = 446

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 36/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G         +             P               
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE  L  
Sbjct: 151 HYAVLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR            I  
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
            Y     S+   +  +     G  ++V G     G   +     +GK A
Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377


>gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
 gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
          Length = 452

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 155/432 (35%), Gaps = 39/432 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  +      ELI           +R IN VS+D+R+I+ G +FVA+VG + D H F  Q
Sbjct: 6   LSQIAEALDAELIGN---------DRVINSVSTDTRNIEQGALFVALVGERFDAHHFTHQ 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++VS   S          + P LVV +T+  L    + ++       +A+TG
Sbjct: 57  AVDSGAGALLVSKPVSG---------DVPQLVVKDTKLALGQLGALVHQTCLTPTVAITG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++V   +  I ++ G   F  G  +           +TP                V
Sbjct: 108 SCGKTTVKEMIASIMEQKGQVLFTAGNFNNEIGVPLTLLRSTPE-------------DDV 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   +    ++       N+   H++   +      A      + L   S
Sbjct: 155 AVIELGANHIGEIAYTTRLVQPDVALVNNVAAAHLEGFGSMDGVKQA-KGEIYQGLKAGS 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFD 301
            AI+  D        +   +   +  S+           +      +    +     +  
Sbjct: 214 VAIVNLDSNGGDYWQEVLADKLVKTFSLTDSSADFTASDISLNEIGEASFVLKTPQGEIK 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+  V NAL A  L + +G    ++   L  L+ V GR E +  N +   I   
Sbjct: 274 VTLGIIGQHNVANALAATALALELGASLEMIQSGLASLNKVKGRVELIELNQQIKLIDDS 333

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           Y  +  +++     +      R +++      GD        +G+ A       ++T   
Sbjct: 334 YNASVPAMKAAADLLAGFKGVRWLILGNMAELGDESLALHRQVGQHAAPFKFEYVLT--- 390

Query: 420 PRSEDPEKIRAE 431
               D + I  E
Sbjct: 391 -FGADAKAISEE 401


>gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli]
 gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli K-12]
          Length = 452

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 165/448 (36%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
             A A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GAAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +       NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPERALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDRVLSVGKQSHAISTA 400


>gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 442

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 132/381 (34%), Gaps = 21/381 (5%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  VS+DSR      +F A+ G   D H ++ +A  QG  A VV              
Sbjct: 6   VTVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEG-------- 57

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N   L+V ++R  L   A  L  K    ++A+TG+SGK++V   V  I Q+S + S   
Sbjct: 58  -NIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSD-- 114

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +     +       P+ L              + + A+  G   +     +    
Sbjct: 115 ----DVLFTQGNFNNDIGVPLTLL---RLTERHKFAVIELGANHIGEIAYTTSLAQPDVA 167

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H++   +      A        L K   AII     Y ++          + 
Sbjct: 168 LVNNVMAAHLEGFGSIDGVATA-KGEIFRGLTKNGVAIINLAHNYQQKWQADIGRHAVQY 226

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +        + +++          +           P  GE  + NAL A  L + +G 
Sbjct: 227 FAYDNPRADFYAEQIHFSEQGASFLLHTPQGRVQINSPYLGEHNISNALAATALSMNVGA 286

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +A V + LE   +V GR   +        +   Y     S++  +  ++   + R+ VV
Sbjct: 287 TTAQVKKGLETPSLVKGRLFPIQPCENLLLLDDTYNANVGSMKSAISVLQKYPAFRVFVV 346

Query: 388 --FGCGGDRDQGKRPIMGKIA 406
              G  GD  Q     +G+ A
Sbjct: 347 GDMGELGDNAQLCHQEVGEFA 367


>gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 463

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 94/478 (19%), Positives = 163/478 (34%), Gaps = 54/478 (11%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   +      E ++   V  DSR I+ G +FVA  G   DGH F   
Sbjct: 1   MIAMSLAEIAEAVGGRLSDTANPETRVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121
                      + A        +   + P ++VD+ +      A  +  + PE  I+ VT
Sbjct: 60  ----------AAVADGAVAALVSREVDAPSILVDDVQLAFGKLARAVVDRLPELKIIGVT 109

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    + ++C+  G +    G  +                            + 
Sbjct: 110 GSAGKTSTKDVMAELCRALGPTVAPEGTLNNEIGLPYTVL---------------KVDET 154

Query: 182 VTHVSVEASSHGL-DQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             ++ +E S+ G+     L GI         N+G  H+    T      AK  L E + P
Sbjct: 155 TRYLVLEYSARGIGHIDYLCGIAPPGIAVVINVGTAHMGEFGTVDGIARAKGELAEAVAP 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +       ++    R       V     +   I    V +   + + T+      
Sbjct: 215 GGVVILNA---DDARVAAMRDRARARVVTFGEAESADIRATDVVSEAGQPRFTLHTPNGS 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 L G   V N L AA + + +G+ +  +       L + P R +          I
Sbjct: 272 APVALKLYGAHHVSNTLAAAAVAVELGMAAEAIASVVSGPLSLSPRRMDVFTRADGTTVI 331

Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
              Y    +S+   +  +  +    R I V G     GD  +     +G++A    DI I
Sbjct: 332 DDSYNANPSSMAAAINALADLGKESRKIAVLGYMAELGDETEAAHLQVGELAARN-DIDI 390

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKG 468
           V          E++ A I  G            ++ EAI    E+L+  DV++V  KG
Sbjct: 391 VIS-------VEEVAAAIAEGAGLAGSIAYGVDDQAEAIAKLDELLDVGDVVLV--KG 439


>gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 452

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/466 (15%), Positives = 160/466 (34%), Gaps = 32/466 (6%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ + +      Q+  ++IN V+ DSR I    +F+   G   DGH F+ +A+
Sbjct: 1   MINVTLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFEGENVDGHRFVSKAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        + +  +      PI+ V++T   L   A          ++AVTG++
Sbjct: 61  QDGAGAAFYQKGTPIDENVSG-----PIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ +           G          +N +  P  I     L   +   ++ 
Sbjct: 116 GKTTTKDMIESVLHTEFKVKKTQGN--------YNNEIGLPLTI-----LELDNDTEISI 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  S     +   +  +      TN+G  H+    +++    AK  +   L    +  
Sbjct: 163 LEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               +      V +  +     +           +           +          +  
Sbjct: 223 YDGDEPLLKPHVKEVENAKCISIGVATDNALVCCVDDRDTTGISFTI-----NNKEHYDL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G+  + NA +A  +   +G+    + ++L+ + +   R E     +    I   Y  
Sbjct: 278 PILGKHNMKNATIAIAVGHELGLTYNTIYQNLKNVSLTGMRMEQHTLENDITVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  S+   +  + T+T  RI+++      G+  +     +G    +     + T  N   
Sbjct: 338 SPTSMRAAIDTLSTLTGRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGN--- 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            + + I       +       ++ + I      L   D ++V  KG
Sbjct: 395 -EAKYIYDSGQQHVEKAQHFNSKDDMIGVLTSDLKAHDRVLV--KG 437


>gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2]
 gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 103/490 (21%), Positives = 159/490 (32%), Gaps = 54/490 (11%)

Query: 12  PELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            ++   L   P     E   + VS+DSR I    +FVA+ G + DGH FI   + +G   
Sbjct: 10  ADIAKALGQGPTHTVTEIVFSGVSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRGVRG 69

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            VV     +               VDNT   L   A     +    ++A+TG++GK+S  
Sbjct: 70  FVVKKGQKIPKDV----PGCLFFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKTSTR 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
               +I  R   +    G  +            +                    V +  +
Sbjct: 126 KMTGEIFGRKFNTLTTRGNLNNEIGLPLTLLGLSLD-------------HEWAVVEMGMN 172

Query: 191 SHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            HG + HRL  I     G  TN    H++   T +    AK  L    +     A++  D
Sbjct: 173 -HGGEIHRLGSIALPDIGVITNTSHCHLEGLGTVEGVARAKAEL-LPHVRVHGSAVLNLD 230

Query: 250 DAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           D                 N  C  +                        +S      +  
Sbjct: 231 DPRFPIFSAAVRANTAIENIVCFSMDRLNMDCVGASAIADREEGMGFTLVSPSEGTREVF 290

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
              P  F V NAL AAG  +A GI   ++ + LE     PGR       +    I   Y 
Sbjct: 291 LHTPARFMVSNALAAAGAALAAGISMDVIKQGLEAFEPEPGRMHLEPGFNHTTIIDDTYN 350

Query: 364 HTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQG---KRPIMGKIAL-----------D 408
               S+   L+ + R   +G  I V G   +   G       MG +A             
Sbjct: 351 ANPGSVGAALETLERVTQNGVGIAVLGDMLELGPGTEQFHREMGALAAASGISRLYAHGP 410

Query: 409 LADIAI---VTDDNPRSE----DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNK 458
           +AD  I   V    P S       ++I A+++   P     + KG+R   +   +  L +
Sbjct: 411 MADHVIHGAVKAGFPGSAAMTGTRDEIAADLLAHTPENAWILVKGSRGMRLEKIVSQLKR 470

Query: 459 QDVLVVAGKG 468
                +AG G
Sbjct: 471 TTT--IAGGG 478


>gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
 gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
          Length = 473

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 177/466 (37%), Gaps = 41/466 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           LI+ ++ F +         +S DSR +  G +F  I G+  DGH F   A AQGA  +VV
Sbjct: 10  LISAMNGFTVGCLPETFPGISIDSRTLLEGDVFFCIKGHHLDGHDFAAHAYAQGAGVLVV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +        + + P++VV +  + L   A     +    I+A+TG+ GK++    +
Sbjct: 70  ----AENRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKTTTKEAL 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           +Q  +  G     +   +               P+ LA+           +   E   + 
Sbjct: 126 KQALETVGKVHANLASFNNCWGV----------PLTLARM-----PIDSDYAIFEIGMNH 170

Query: 194 LDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            D+ R  +  +       T +   H+++ ++ +   +AK  +FE  L K+  A++ ADD 
Sbjct: 171 KDEIRPLVKLVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEG-LDKDGIALLNADDH 229

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +   ++++A   G + +    Q        K+V  + N   + + ++ KD       PG+
Sbjct: 230 FFSYLLQKAKQFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIKIGAPGQ 289

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHT 365
             V N L     C A+G D A V+  L +  +  GR                I   Y   
Sbjct: 290 HMVQNGLSVLAACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESYNAN 349

Query: 366 SNSLEMILK---NIRTITSGRIIVVFGCG---GDR-DQGKRPIMGKIALDLADIAIVTDD 418
             S+   L           GR I + G     GD  ++  R ++  I +    +  +   
Sbjct: 350 PTSMRAALDLLATGPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFLV-- 407

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               ++ + +  ++   +       N  E +      ++  D++++
Sbjct: 408 ---GKEMKFLANDLSSHV-NVCHSENIEEILPLVFSEISNGDLIMI 449


>gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
 gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
          Length = 456

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 174/476 (36%), Gaps = 49/476 (10%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++      +   +   +     +++ I  VS+D+R IQ   +F+ +VG K DGH F   A
Sbjct: 1   MLKATLETIAKIVGGTLVTTSMKDKIIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA A +    +      A       I++VDNT +     AS         ++ +TG+
Sbjct: 61  VKKGAVATLWDKRHPTPYLDAG------IIIVDNTLQAYQKLASSYLKATGAKVVGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+     +  I + +                  +N +  P  I     +       V 
Sbjct: 115 NGKTGTKDILASILKENFRVHNTAKNL--------NNEIGVPKTI-----MEMDLDDEVV 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +     G  +   +  +      TN+G  H+    T++    AK     E L  +  
Sbjct: 162 VLEMGMERFGEIKTLTNIARPDIAVITNIGDSHLLELGTKENIARAKF-EILEGLKPDGV 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I   DD   +EV+K        +     +   + ++ + +       +I     ++ + 
Sbjct: 221 FIFNNDDEVLREVIKEYTITQKVIKIGTREDSDVIIRPIRSDEEGSSFSI----GEYAYS 276

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G+ Q+YNA VA  +   +G++   ++  L ++ +   R E +  +S        Y 
Sbjct: 277 IPFIGKHQIYNASVAITIAGLLGMNYGDIVRGLSRVKLTGMRMELIHLSSFDVLNDC-YK 335

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDD 418
               SL   ++ + T+      I++     +  + +R +   +   +     D  I   D
Sbjct: 336 SNPQSLTSCIETVYTMKGYKNKILILSDMLELGENERKLHFSVGEKIDRNKIDYVICIGD 395

Query: 419 NPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    +  EI +G      +          E +    E++++  +++V  KG
Sbjct: 396 ---------LAKEIYNGANRNFNVNNLFHFETNEEVVNKVRELISEDTLIMV--KG 440


>gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0031]
          Length = 474

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPYAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 459

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 173/472 (36%), Gaps = 41/472 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQ---WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK  ++      +++    I P      +  +I    +D+R ++  ++F+ +VG + DGH
Sbjct: 1   MK--NMTLAHVAQVVKGQLILPEGREALKNSEIQGAVNDNRKVEKDFLFIPMVGARVDGH 58

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            FI  A ++GA A +                  P ++V++T+  L   A+    +    +
Sbjct: 59  DFIEDAFSKGALASLSERKLENVSG--------PYIIVEDTKLALKQIATDYRMQLNIPV 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V G+ GK+S    +  +           G  +               P+ + +     
Sbjct: 111 IGVIGSVGKTSTKEMLSSVLATKFNVLKTEGNFN----------NEIGLPLTICRIKDE- 159

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
               V  V +  S  G + HRL  I K      TN+G+ H+++ +++     AK  +FE 
Sbjct: 160 --HQVAVVEMGISDFG-EMHRLGDIAKPDYVVMTNIGQCHLEFLKSRDGILQAKTEVFEH 216

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +    +  +   DD         A   G   +  G  G+ +    + A        +   
Sbjct: 217 MPKNGTVILNGDDDKLIN-----ADTLGLNKIFYGLNGQEVSASDIVAEGMTGTRAVINL 271

Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             + F+    LPG   V NAL AA +   +G+ +  + + LEK   + GR   +      
Sbjct: 272 FGESFEATIQLPGTHNVMNALAAAAVGKVLGLSNEEIKKGLEKASTIAGRNNVIEVRDIT 331

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADI 412
                 Y     S++  ++ +     GR I V G     GD ++     +G+   D    
Sbjct: 332 IIDDC-YNANPVSMKASIEVLGK-APGRTIAVLGDMGELGDDERQLHYEIGQTLEDNHIG 389

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + T  +  SE+     ++            N    +   + ++   D ++V
Sbjct: 390 YVFTVGDL-SEEINNSLSQKNSSCMAHHY-TNVEAMLEDLLPIIRGGDTILV 439


>gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia proteamaculans 568]
 gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia
           proteamaculans 568]
          Length = 453

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 159/454 (35%), Gaps = 43/454 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + +I EV++D+R +  G +FVA+ G + D H F             V++       S 
Sbjct: 19  GADCQIVEVTTDTRQVTTGCLFVALKGERFDAHDF---------AVDAVAAGAGALLVSK 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +    P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV      I +  G   
Sbjct: 70  RLLVEVPQLVVKDTRLALGQLAAWVRQQVPTRVVALTGSSGKTSVKEMAAAILRECGEVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L              + + A+  G   +     + 
Sbjct: 130 YTAGNFN----------NDIGVPLTLL---RLQPQHDFAVIELGANHIGEIAYTTALTRP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 NL   H++   +      AK  +F  L       +   ++ +            
Sbjct: 177 QTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAILNADNNDWPHWQSMLDGKTV 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R      +G       V       Q  +       D   PLPG   V NAL AA L ++
Sbjct: 237 WRFSPQAAEGVDFFASDVQVNGKGTQFRLHSPFGTADIALPLPGRHNVANALAAAALAMS 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G     V + L++L  VPGR   +  +     +   Y     S+    + +  +   R+
Sbjct: 297 AGASLEAVRQGLKQLQAVPGRLFPIALSDHQLLLDDSYNANVGSMTAAAQVLAEMPGYRV 356

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALDLA--DIA--------IVTDDNPRSEDPEKIRAEI 432
           +VV      G   +     +G+ A  LA  D          ++T+ +   E  +   A I
Sbjct: 357 MVVGDMAELGAEAEECHRQVGE-AARLAGVDKVLGVGPLSQVLTEASGNGEHFQDKAAVI 415

Query: 433 I--------HGIPGFIEKGNRIEAIRTAIEMLNK 458
                    H +   + KG+R  A+   +  L +
Sbjct: 416 ARVAELLSEHAVITVLIKGSRSAAMEQVVRALQE 449


>gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
 gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
          Length = 467

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 151/473 (31%), Gaps = 51/473 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           + +    L   L       ++  +  +++D+R +Q G  F+A+ G + DGH F+ QAIAQ
Sbjct: 7   LTQLSQILAVSLPPQCDTPQDTPVIAITTDTRTLQPGEAFLALRGERFDGHHFVEQAIAQ 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA   +V + ++  +       N P+L V ++       A     +    I+ VTG+ GK
Sbjct: 67  GAVCAIVDADFTADN------PNLPLLTVQDSLAAYQTIARWWREQFTIPIIGVTGSVGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +          +  +G    +     +       P  L +  S         + 
Sbjct: 121 TTTKELI----------AAVLGTQGNVHKTQANYNNEIGVPKTLLQLNS---HHNYAVIE 167

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +   + G         +   G  TN+G  HI    ++QA   AK  L  E+       + 
Sbjct: 168 MAMRARGEIALLTQIARPTIGLITNVGTAHIGRLGSEQAIAEAKCELLAEMPQNSVAVLN 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                                   G   +   +                  +  D   PL
Sbjct: 228 CDHHRLMDTAATVWSGETLTYGLEGGDLQGELIDAHTL-----------RVEGLDLPLPL 276

Query: 307 PGEFQVYNALVAAGLCI------AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           PG     N L A  +            +    L+    + +  GR +    ++    +  
Sbjct: 277 PGYHNASNFLAALAVFKIIQGQGLSPTELYTPLQTGLSVQLPEGRAKRYELSNDIVILDE 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416
            Y     S+   LK +      R I V G     G+R       +GK+A +L  D   + 
Sbjct: 337 TYNAGLESMIAALKLLMETPGQRFIAVLGTMKELGERSLEFHQKVGKMAQELNLDALFIL 396

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRI-EAI-----RTAIEMLNKQDVLV 463
            D       E I           +E G    E I        IE +   D ++
Sbjct: 397 AD-----AEEAIAMATGAKGLSVVEIGKMEVENIHNQIAEQLIEFIQPGDRIL 444


>gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
 gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
          Length = 463

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/472 (16%), Positives = 155/472 (32%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  K+                 ++ + V+ DSR +Q   +FVAI G + DGH FI
Sbjct: 1   MK--NMSLKEIAAACGGTYHGDPALLSKEASSVAIDSRKVQKDTLFVAIKGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + QGA   +         +        P + V +  + L   A          ++ +
Sbjct: 59  PQVMDQGAICSLSEQDLGDVTY--------PYIQVASCTEALKDLAEHYRRSLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G+ GK+S    +  +           G  +               P+ +          
Sbjct: 111 SGSVGKTSTKEMIASVLSEKYCVLKTEGNFN----------NEIGLPLTVFNLRKE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  S  G  +      +      TN+G  H++   T+      K  +F+ + P 
Sbjct: 158 EVAVLEMGISHFGDMEPLAKIARPDVCVITNIGYAHLENLGTRDGILKEKTSMFDFMNPD 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  +   DD       +R        L          ++K+         T       F
Sbjct: 218 GTVILNGDDDKLRGYTSERGIQPVYFGLDPACPFHAEQIQKMGLKGTV--ATFVTPSSSF 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG+  + NAL    +  A+G+    ++  +EKL  + GR   +           
Sbjct: 276 SAHVSIPGDHMISNALAGVAVGYALGMKDEEIIRGIEKLVPIAGRNNLIEAEHYTIIDDC 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTD 417
            Y     S++  L  +      R + + G  G+    ++     +G  A+      ++  
Sbjct: 336 -YNANPASMKSSLDVL-AFADTRTVAILGDMGELGADEKKMHAEVGSYAVKKGISLLICI 393

Query: 418 DNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAI-RTAIEMLNKQDVLVV 464
               +E     R              +   +  EA  R   ++L +QD ++V
Sbjct: 394 GTLSAEMANAARTASEASSDSDTKTLVYHFDTKEAFYRQMDQLLKEQDTVLV 445


>gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
 gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
          Length = 477

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 150/415 (36%), Gaps = 33/415 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +     +L+  ++  P+      I  +S DSR IQ G  F AI G++ DGH +   A+A 
Sbjct: 3   LLWTIEDLVAAMTGRPVGTMPPGITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIAVAN 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VV+ A       A  R   P++VVD+  + L   A     +    I+AVTG+ GK
Sbjct: 63  GAALMVVNEA----KLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    ++Q+   SG     +   +               P+ LA+  +   +       
Sbjct: 119 TTTKEMLRQVLAPSGEVHAAVASFNNHWGV----------PLTLARMPA---TAQYGVFE 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  +  G     +  ++      T +   H+    +     +AK  +F  +       + 
Sbjct: 166 IGMNHSGEITPLVQMVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVAANGGVLLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + +  +     K        + S G   K    L +             ++G+  + +  
Sbjct: 226 HDNPYFEYLEHKAQEAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIA 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--Y 362
            PG     NA+ A G    +G D    ++ L +L  V GR E        G    +D  Y
Sbjct: 286 APGRHIAENAMAALGAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDESY 345

Query: 363 AHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALD-LADIA 413
                S+   +  +        G  I V G            MG+ + +  AD+A
Sbjct: 346 NANPASMRAAIAVLAAAQPRGEGHRIAVLGDML--------EMGEFSEELHADLA 392


>gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
 gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
          Length = 452

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 173/474 (36%), Gaps = 34/474 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           +L+  +              VS+D+R IQ G +FV ++G + DGH ++ QA+++GA+A +
Sbjct: 6   QLLKGIITKNNPSAPLSFTGVSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQASL 65

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            +++  +     ++++   +L V++T   L   A     +    ++AVTG++GK++V   
Sbjct: 66  WATSVPV---PESLKNEDRLLFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGKTTVKDL 122

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +       G      G                  P+ +    +   +     + +  S  
Sbjct: 123 LYATLAPLGSIYKTQGN----------YNNHIGLPLTVLSMPA---NCQTLILEMGMSGL 169

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +             TN+G  H++   +++    A        L       +  D+  
Sbjct: 170 GEIELLSKLATPDIAVVTNIGESHLEQLGSRENIAKA-KMEIALGLKPTGVLFLDGDEPL 228

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               +K                  I +  + A  +    TI     +  +   L GE  V
Sbjct: 229 LSHYVKEGVQTVGF-----SSENKIVIHDLEAREDGYSFTID----EHSYDIKLIGEHNV 279

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA  A  + + +G+    V   LE++ +   R E +        +   Y  +  S++  
Sbjct: 280 KNAAYAVSVALHLGLSPEQVARSLERVAISKMRLEKIEGQKGALLLNDAYNASPTSMKAA 339

Query: 373 LKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +K ++      + + V G   +    +  +   +A ++ +    T      E  + I  E
Sbjct: 340 IKTLKAYPNYEKKVAVLGDIYELGIDEEALHRSVADEITEPI--TTAVLVGEKGQWIADE 397

Query: 432 IIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV--AGKGHETVHIVTNGEKK 481
           +        F+    + EA    IE L     +V+  A +G E   IV   +++
Sbjct: 398 MKRRGSNIPFVSFVEKEEATDY-IEGLLDGKTVVLFKASRGLELESIVDKLKRE 450


>gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
 gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
          Length = 456

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 93/467 (19%), Positives = 158/467 (33%), Gaps = 36/467 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++       I       +   +   + V +DSR I  G +FVA+ G + DGH ++ +  A
Sbjct: 1   MLKPWLLSEIAADLSARLIGDDVAFSAVGTDSRTIAPGQLFVALTGPRFDGHDYLAEVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A +V    +         +  P L+V +TR  L    +         + AVTG+SG
Sbjct: 61  KGAVAALVEREVA--------NAPLPQLLVADTRLALGQLGALNRQAFTGPLAAVTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   +  I +         G    + +   +      +P+ L +            +
Sbjct: 113 KTSVKEMLAAILRA--------GLNGAVLATRGNLNNDLGAPLTLLELAPEHR---AGVI 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +   +      TN G  H+      +    AK  + E L       +
Sbjct: 162 ELGANHVGEIAYTVSLTRPQVTIITNAGNAHVGEFGGPEKIVQAKGEILEGLAQDGVAVL 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D A+S    + A +          +  F            Q  T+            
Sbjct: 222 NLDDKAFSTWQRRAAGHQVLSFALRDTRADFHGSDLARDERGCQGFTLRSPVGSVRIQLN 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L GE  V NAL A     A+G+    + + LE L  V GR       +    I   Y   
Sbjct: 282 LLGEHNVANALAACAAAHALGLPLVAMAKGLENLQPVKGRAVAQLAPNGMRVIDDSYNAN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPR 421
             S+   +  +    SGR ++V G  G+     +QG R  +G+ A    D         R
Sbjct: 342 PVSMCAAVDILAGF-SGRTVLVLGDMGELGEWAEQGHR-DVGRHAAGKVDALYAVGPLMR 399

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +           ++ E I  A+        L++  KG
Sbjct: 400 F--------AVEEFGSKGRHFVDQAELIE-ALRAEQAGSTLLI--KG 435


>gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806]
          Length = 454

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 159/463 (34%), Gaps = 40/463 (8%)

Query: 6   LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      +L++      + +  +  ++ +++DSR I++G  F+A+ G+  +GH FI  AI
Sbjct: 5   LSLNQLAQLLSLQDKADISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAI 64

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA A++V    S+        SN P+ +V NT K     A     +    ++A+TG+ 
Sbjct: 65  ARGAAALIVDQPVSVN-----YSSNIPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSV 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +    G     +           +N +  P  +         +      
Sbjct: 120 GKTTTKELIASVLATRGKVHKTLAN--------YNNEIGVPKTLLELDETHDSA-----V 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G         +      TN+G  HI    + ++             P  S A
Sbjct: 167 IEMGMRGRGEIALLAQIAQPTIAVITNVGTAHIGRLGS-ESAIAEAKCELLSESPSSSIA 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D     E  KR                   L  +           ++     DF  
Sbjct: 226 VLNYDHPLLTETAKRVWQGETITYGFFGGDIVGELLDLT----------TLRVNGLDFNL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G     N + A  +   +GID    L+   K+++  GR +          +   Y  
Sbjct: 276 PLSGRHHALNFMAALAVAKILGIDW-TSLQQGIKVNLPSGRAKRYQLEPDILLLDETYNA 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNP 420
              S+   L  ++     R + V G     G   +     +G+    L  D   V  D+P
Sbjct: 335 GLESMLAALDLLKATPGQRHLAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDP 394

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 K  AE   G+          + I    E+++  D ++
Sbjct: 395 ----EAKFIAEAATGVA-CECFQTHADLINRLKEVIDSGDRIL 432


>gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 455

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 131/389 (33%), Gaps = 28/389 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + + + VS DSR IQAG +F+A+ G + DGH ++ +  A+GA A +V             
Sbjct: 22  DARYSGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEVAAKGAVAALVEREVP-------- 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            S  P L+V +TR  L    +         + AVTG+SGK++V   +  I +  G     
Sbjct: 74  DSTLPQLLVKDTRLALGQLGALNRAAFSRPVAAVTGSSGKTTVKEMLASILRTRGPVHAT 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +             P                   + + AS  G   + +   +   
Sbjct: 134 RGNLNNDLGAPLTLLELAPE-------------HTAAVIELGASRIGEIAYTVAMTRPHV 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N G  H+      +    A      E L     A++  DD        RA      
Sbjct: 181 AIINNAGTAHVGEFGGPEKIVEA-KGEILEGLDSAGIAVLNLDDKAFPIWKARAAGRQVL 239

Query: 267 VLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++           +           +            L G   V NAL AA    A+
Sbjct: 240 SFALTDSSADFFASDIGRDARGCPSFKLHSPKGVEAVQLNLLGTHNVANALAAAAAAHAM 299

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    ++  L  +  V GR       +    I   Y     S+   +  +    SGR +
Sbjct: 300 GVSLFGIVTGLNAVQPVKGRTVAQLAKNGMRVIDDTYNANPTSMCAAVDILAGF-SGRTV 358

Query: 386 VVFGCGGD----RDQGKRPIMGKIALDLA 410
           +V G  G+     +QG R +    A  ++
Sbjct: 359 LVLGDIGELGEWAEQGHREVGAYAAGKVS 387


>gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus torques L2-14]
          Length = 461

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 139/420 (33%), Gaps = 33/420 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   +   +  +    +      + +R+++ V+ DSR +    +FVAI G + DGH FI
Sbjct: 1   MK--HMTLSEIADACCGIYYGDPAFLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ +  GA   +        D+        P + V +  + L   A          ++ +
Sbjct: 59  PQVMEAGALCSLSEQDLGDVDY--------PYIRVSSCTEALKDLAEHYRRSLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +           G  +               P+ +          
Sbjct: 111 TGSVGKTSTKEMIASVLSEKYNVLKTEGNFN----------NEIGLPLTVFNIREE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  S  G  +      +      TN+G  H++   T+      K  + + + PK
Sbjct: 158 EVAVLEMGISHFGDMKPLAKIARPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPK 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKD 299
            S      DD         + +    V          H++ +     K            
Sbjct: 218 GSVIFNGDDDKLKSY---TSRDGRTPVYFGLTSSCPFHVENIERKGLKGTYAEFVTPTSR 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F     +PG+  +YNAL    +  A+G+D+  +   +EKL  + GR   +          
Sbjct: 275 FHAHISIPGDHMIYNALAGVAVGYALGMDNEEIARGIEKLVPIAGRNNLIEAKHYTIIDD 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIV 415
             Y     S++  L  +      R + + G  G+         R +    A    D+ + 
Sbjct: 335 C-YNANPASMKSSLDVL-AYADTRKVAILGDMGELGADELAMHREVGAYAAFKNTDVLVC 392


>gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 464

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 140/420 (33%), Gaps = 30/420 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L          +     + P       I+ VS DSR I    +F+ I GN  DGH F+
Sbjct: 1   MRLS---LDTILSVTGGTLVAPTTGYNSYIDGVSIDSRAITTNSLFICISGNITDGHNFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +GA AI+ S      +         P+++V +T   L + A          ++ +
Sbjct: 58  LKAVEEGASAILASHNPFEGEVP------VPVILVPDTLNGLKVLAQAARKMTKAKVIGI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++V   V Q+    G  +      +T    +                      +
Sbjct: 112 TGTAGKTTVKELVAQLLTSKGKVAKNYLNFNTQIGMSFSILAAQGD-------------E 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + V  S+    +     +        N+G  H+     Q   ++    L       
Sbjct: 159 DFWVMEVGISNPQDMEELGTILTPDIALIINVGPGHLSGLNKQGVAYHKAQLLRYMKDEG 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                +   D   +  +K   +       +  Q ++         +      + ++    
Sbjct: 219 LGIVSLDYPDLVKE--VKELRSGSLFFSVLDNQCRYYSKYTGIVENGYGTYRLWLDDDIV 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P  G F + + L +A +   +G+ S  + + L +  +   RF      +    I  
Sbjct: 277 DVTSPFLGNFGMESVLASATIAHKLGVSSDSIKQQLFQAILPQNRFSCFTHGNW-LCIDD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFG-----CGGDRDQGKRPIMGKIALDLADIAIV 415
            Y     S+  ++++   ++  +  +V+        GD  + +   +GK         I 
Sbjct: 336 SYNANPLSMNAVIESTYKLSDEKKPLVYVLGEMLELGDSSEAEHEKIGKKLAQTGASIIF 395


>gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
 gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
          Length = 474

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 163/474 (34%), Gaps = 33/474 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK + L       L+  L         R  + +S D+R +  G +F AI G   DGH F+
Sbjct: 1   MKAESLWSGLG--LVGALRARVSGGLPRDASGISIDTRTLAPGDLFFAIKGEARDGHDFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA   VV  A++       +    P+ VV + ++ L    +R   +    ++ V
Sbjct: 59  AAAFERGAAGAVVDEAHA-----GALAGRAPLYVVKDVQESLERLGARARERSAAYVVGV 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S       +  R G +       +               P+ LA+  +     
Sbjct: 114 TGSVGKTSTKEMAAAVLSRFGAAHASAASYNNQWGV----------PLSLARMPAATRFG 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                   A         +   +      T +   H+++    +A  +AK  +F   +  
Sbjct: 164 VFEIGMNHAGEIAALAPLV---EPHVALVTRVAPVHLEHFACLEAIADAKSEIFSG-VVD 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+  DD   + +++ A  +    +      +    + +     +  V   + G+  
Sbjct: 220 GGVAILNRDDETFERMLEAAAASRAAHVFGFGVSEGAQARLLSYDPRENSVEADIFGRRL 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +    PG     N+L    +   + +D A     L +     GR       +    + +
Sbjct: 280 RYRIGAPGRHFALNSLAVLTIAHVLDLDLAQASAALAEFAPPKGRGRREQLPAGAVPLTL 339

Query: 361 ---DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAI 414
               Y     S+   L+ +      GR + V G   +       +  ++A DL  A + +
Sbjct: 340 IDESYNANPTSMRAALELLGAERPIGRRVAVLGDMLELGPSAAELHAELASDLEAAGVDL 399

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +    P          E + G      +    EA+   ++ L   DV+++  KG
Sbjct: 400 LFTAGPLMARLYYAAPERMRGAHRATARE-LEEAV---LDSLGAGDVVMI--KG 447


>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 147/417 (35%), Gaps = 36/417 (8%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            DL+        + + I P  +    +N +S DSR I     F AI G   DGH FI  A
Sbjct: 8   HDLLQAIQG---HSIGIVPQGF----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +GA  +VV++       ++    + P+  VD+    L+  A     +    I+A+TG+
Sbjct: 61  VQKGAGLVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    +         +   IG                  P+ LA            
Sbjct: 117 VGKTTTKEMLTIALSSIKKTYACIGS----------YNNHIGVPLTLA---RMPVDVDFG 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +  S  G  +     ++      T +   H+      +   +AK  +FE  L K   
Sbjct: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGT 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             +  DD++ + +  ++H  G +        +     L+K      +  + + ++GK  +
Sbjct: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYV 360
            +    G     N L+  G+   +  D    ++ L   H   GR +      ++G    +
Sbjct: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342

Query: 361 D--YAHTSNSLEMIL---KNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDL 409
           D  Y     S++  +     I     GR I V G     G+  Q     + ++    
Sbjct: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399


>gi|289447786|ref|ZP_06437530.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420744|gb|EFD17945.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
          Length = 404

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 6/248 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 39  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 99  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK  LF+      + 
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275

Query: 244 AIIYADDA 251
             +   D 
Sbjct: 276 TAVVCIDD 283


>gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
 gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
          Length = 481

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/449 (17%), Positives = 149/449 (33%), Gaps = 31/449 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--- 88
            V +DSR ++ G IFV + G   DGH ++ QA   GA  I+V+         A   +   
Sbjct: 33  NVVTDSRDVKKGCIFVCLKGEFHDGHDYVRQAAEDGAGIIIVNEDKKADVMKAIDDARAM 92

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           NT ++ V      +   A           + +TG+ GK++V   V  +   +  +    G
Sbjct: 93  NTSVISVKAPLYAMGELAKWYISYLGVKTIGITGSVGKTTVKDMVASVLPSAMNTYKTKG 152

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +++                   ALS      +    +   + G      + I      
Sbjct: 153 NFNSLIGLP-------------LTALSMPRDTSLCVFELGMDAKGEIDRLSEIIAPDVAI 199

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR-- 266
            T +G  H++   +++  F AK  +   + P  +  +   +D    +      N      
Sbjct: 200 ITKIGVSHVERLGSRENIFRAKSEIVNHIKPGGTLILGVDEDEQYLKKENFTGNFNVIEV 259

Query: 267 --VLSVGYQGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                 G       ++ V       +   S    +         G     NA +A    +
Sbjct: 260 TAKHYAGVDSNTYCVENVRDDMEGIRFEFSGGGYEKIPVTINTHGIHNALNAGLAIACGL 319

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              ID   + E L+ ++    R E          I   Y  +  S+   L+ +  I+ GR
Sbjct: 320 QFDIDLESIKEGLKNVNFTAKRLEI-KEKGGITFIDDSYNASPESMSSALRVLSQISKGR 378

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRS--EDPEKIRAEIIHGIP 437
           ++ V G     G   +     +G++  DL  +  I   +  R   E   +  AEI     
Sbjct: 379 MVAVLGDMNELGKDSEDFHKRIGRLVFDLGIEELIAVGEKGRGYIEGFSE-AAEIEGKKN 437

Query: 438 GFIE--KGNRIEAIRTAIEMLNKQDVLVV 464
                   +  +      + +++ D +++
Sbjct: 438 DVQIVWIEDSKKCRDACFKHISEGDWVLL 466


>gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
 gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
          Length = 476

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 166/476 (34%), Gaps = 55/476 (11%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + I   +  P     + I  +S DSR I+ G  F AI G++ DGH F+  A+A GA   V
Sbjct: 10  DFIAGANGTPKGELGQDITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGTALANGASVAV 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS+     D   ++ S    L+VD+    +   A     +    I+AVTG+ GK+     
Sbjct: 70  VSA-----DKLDSLPSTGRYLIVDDPLAAMERLAVASRARSNARIVAVTGSVGKTGTKEA 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           ++    RSG     +   +               P+ LA+  +           +  S+ 
Sbjct: 125 LRLALGRSGKVHASVASFNNHWGV----------PLTLARMPAD---VDFGVFEIGMSAP 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G     +  ++      T +   H+++  + +    AK  +F+ L P     +   ++ +
Sbjct: 172 GEITPLVRMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPGGVAILNRDNNQF 231

Query: 253 S-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                + +A +          Q      + V        V+  + G+   +     G   
Sbjct: 232 DLLMFLAKADHVQEIRTFGENQNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHH 291

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNS 368
           V+N+L      + +G + AL  E L  +    GR E        G    +D  Y     S
Sbjct: 292 VHNSLAVLTAVVELGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPAS 351

Query: 369 LEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           +   L  +        GR I V G   +  +    +  +++            +P +E  
Sbjct: 352 MRAALSVLGEAEITPPGRRIAVLGDMRELGEDGPKLHAELS------------DPVNE-- 397

Query: 426 EKIRAEIIHGIPGFIEKGNR----------IEAI---RTAIEMLNKQDVLVVAGKG 468
                 +    P   +  +R           +A       ++ +   DV++V  KG
Sbjct: 398 -AGVEALFCVGPQMKQLWDRVPQGLRVMYAEQAADLQDHLLQEIRSGDVVMV--KG 450


>gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
 gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
          Length = 437

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 119/364 (32%), Gaps = 23/364 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR    G IF+A+ G   DG+ F   A+ +G    VV      +        +   
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAK------ADDGRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     + P  ++ +TGT+GK++    +  +              + 
Sbjct: 70  ILVDDALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                +  + + AS  G  +  +  ++   G  TN+
Sbjct: 130 DVGVPRTLLGIRPE-------------HEIAVIEMGASHPGDIEKLVKYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +A   E+  +   +         
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLKAHDGLLFLNESNADLMEMAAQREFSRIITYGQDE 236

Query: 273 QGKFIHLKKVCAIHNKQQV---TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                     CA   K      +       ++    L G + + N L A  + +  G+  
Sbjct: 237 TADVQGNVVSCAPFLKFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIGLHFGVTP 296

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V   LE       R +     +    I   Y    +S+   ++N R +     + + G
Sbjct: 297 QQVCHALENYIPHNNRSQLT-ETAHNRLIVDAYNANPSSMAAAIENFRLMQVKDKMAILG 355

Query: 390 CGGD 393
              +
Sbjct: 356 DMRE 359


>gi|289570275|ref|ZP_06450502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
 gi|289544029|gb|EFD47677.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
          Length = 276

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 39  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 99  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK 
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKA 263


>gi|219558137|ref|ZP_03537213.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T17]
          Length = 262

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 25  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 84

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 85  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 201

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            V +E SSH L   R+DG +   G+FTNL RDH+D+H +   YF AK 
Sbjct: 202 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKA 249


>gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
 gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
          Length = 452

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 160/447 (35%), Gaps = 30/447 (6%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
             +        VS+D+R +Q G +FVA++G++ DGH ++ QAI +GA A+++S    +  
Sbjct: 17  KHRGANIPFQSVSTDTRTLQPGDLFVALIGDRFDGHEYVQQAIEKGASAVLISKRMEVT- 75

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                    P L V +T + L         +    ++A+TG+SGK++V   +  + ++  
Sbjct: 76  --------VPFLQVADTTEALGRLGLYNRLRFENPVVAITGSSGKTTVKGMMATLLRQQN 127

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G  +              +P+ L        S     + + AS  G   +  + 
Sbjct: 128 EVLVTRGNLNNH----------IGAPLTLL---RLSDSDDYAVIELGASGLGEIAYTAEL 174

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +      TN G  H++   + +           + L  +  A++ AD  Y +E  KRA 
Sbjct: 175 ARPTVSILTNAGNAHLEGFGSVEGIVKT-KGEIIDALADDGVAVLNADSPYFEEWQKRAG 233

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +                       +     T+ +  +       + G+  V+NAL  A  
Sbjct: 234 SRRVISFGETLSADIRATDIQSNANGCCAFTLHINDEQSQVQLSVMGKHNVFNALACAAA 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C+A+ +   L++  L+    V GR       +    I   Y     S+   +  + +  S
Sbjct: 294 CVALDMPPKLIVSGLQLFEGVEGRLLEKQGLNGSRIIDDSYNANPASVRAAVDVLAS-RS 352

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
              I V G   +          ++    A  A + +     E   K           F  
Sbjct: 353 SHTIFVLGDMAELGVETHLAHAEVGA-YAREAGIDEFFALGEFSRKAADAFGDNAHWFAS 411

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             N    IR   + LNK   ++V  KG
Sbjct: 412 HDNL---IRFLTKKLNKDVTVLV--KG 433


>gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 419

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 138/404 (34%), Gaps = 48/404 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     E+    +   +   +  IN V +D+R    G +FVA++G   D H +I  A  
Sbjct: 1   MLQTKLKEIAKIFNSQALLGSDIIINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEK 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA AI+ S           +++N P++ VD+T   LS  A+         ++A+TG++G
Sbjct: 61  MGAVAIIASK---------QVKTNLPVIKVDDTETALSTIATWHLNNIKPTVVAITGSNG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I      +    G  +          +  P                   +
Sbjct: 112 KTTTKNMLANILNLKAPTLKTQGNLNNHLGVPMTLLMLEP-------------KHQFAVI 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G  +H  D         TN    HI           AK  ++           
Sbjct: 159 EMGANHLGEIKHLRDITHPHIAVVTNTLDAHIGEFGGFNNLVKAKGEIYHT--------- 209

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                          +         G            +  N  Q  ++++ +       
Sbjct: 210 ------------NSQNIVNTNTTFTGDISFGKDGDVFASNINSHQFDLNIKNEKIAVSLQ 257

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
           L G+  + N+L A+    A+ ID   + + LEK     GR   +    +G  I  D Y  
Sbjct: 258 LLGQHNIENSLAASACAYALDIDINTIKKGLEKTQAEKGRLTIIH--RQGLTIIDDTYNA 315

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
           +  S+   +  + +    +I V+      G+  +     +GK+A
Sbjct: 316 SPQSMRAAIDALLSFDGEKIAVLGSMAELGNDSKTFHQQIGKLA 359


>gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
 gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 478

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 152/445 (34%), Gaps = 34/445 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR I  G IFVA+ G + DGH F+ QA  +GA   +VS  +  +  S+   +    
Sbjct: 38  VVIDSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIVSREWFSRQGSSAHEAGARY 97

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV  +T + +   A+    K    ++ + G++GK++       + +         G  + 
Sbjct: 98  LVTADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMTASVLRARYSVHMSEGNFNN 157

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L           V  V +  +  G  +   +      G  TN+
Sbjct: 158 H----------LGVPLTLFG---LREKHEVAVVEMGINHPGEMELLAEIAAPTHGMLTNI 204

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++ +      NA+  L+  +        +  +D+   E              +  
Sbjct: 205 GHEHLEFLRDLDGVANAETALYRYVQKSGGVVFVNREDSRLTEAAA--GIPSTVGYGIAL 262

Query: 273 QGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +G+    + +   +  +   T+     +        G   V NA+ AA +    G+    
Sbjct: 263 EGEGFWAEDIRMDNLGRALFTLCSSAGNAPVTLGFAGRHNVSNAVAAATVGFHFGLTQEE 322

Query: 332 VLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVF 388
           +   LE+L       R EF         +   Y    +S+   L  +  +  +G+ + V 
Sbjct: 323 IAGGLERLKPEEGWKRLEFQRAGGI-TIVNDTYNANPDSVRNALDLLCELPVTGKRVAVI 381

Query: 389 GCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           G     G     +   +G+ A  L   D           E           G+       
Sbjct: 382 GDMLELGGVSSPEHEEIGRYAASLDGLDAFY-----TFGEQAALCCR--TAGMKCAGHFM 434

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  E      E L+  DVL++  KG
Sbjct: 435 DHGELQHLLHESLSPGDVLLL--KG 457


>gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 452

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 95/440 (21%), Positives = 155/440 (35%), Gaps = 50/440 (11%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  +    +   +  I+ V++D+R +  G +FVA+ G + D H F  QA A GA A++VS
Sbjct: 9   LAAILNGELHGADADIDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGAGALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         + P LVV +TR      A+ +  + P  ++A+TG+SGK+SV     
Sbjct: 69  RKLDI---------DLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I    G + +  G  +            TP                   + + A+  G 
Sbjct: 120 AILGECGNTLYTAGNLNNDIGVPMTLLRLTPE-------------HEYAVIELGANHQGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +   +  A    NL   H++   +      AK  +F   LP    AI+ AD+    
Sbjct: 167 IAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTG-LPANGIAILNADNNDWL 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  +      S            +    +  + T+     D D L PLPG   + N
Sbjct: 226 NWQSVIGDRKVWRFSPNLDTSDFSATNIHITSHGTEFTLRTPTGDVDVLLPLPGRHNIAN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+ L +A+G     +   L KL  VPGR   V        +   Y     S+    +
Sbjct: 286 ALAASALAMAVGAPLQAIKAGLAKLKAVPGRLFPVHLGENQLLLDDSYNANVGSMTAAAQ 345

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            +  +   R++VV      GD  +     +G+ A                          
Sbjct: 346 VLSEMPGYRVMVVGDMAELGDEAEACHQQVGEAAK------------------------- 380

Query: 433 IHGIPGFIEKGNRIEAIRTA 452
             GI   +  G   E I  A
Sbjct: 381 AAGIDKVLSVGTLSEGISRA 400


>gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Weissella cibaria
           KACC 11862]
          Length = 454

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 167/478 (34%), Gaps = 48/478 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E+   ++   +   +  +   + DSR  +AG +FV +V    DGH ++
Sbjct: 1   MKL------TLQEMATAINAEIINAADVAVTSTTFDSRKAEAGSLFVPLVAAN-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA   +  + +        + ++ P LVV +T       A     +    ++A+
Sbjct: 54  ASAVANGATVTLWQADHP------NVPTDVPTLVVADTLVAFQQLAVYYLKQVQPKVVAI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G++GK++   FV  I   +  +               +N +  P+ I     LS  +  
Sbjct: 108 SGSNGKTTTKDFVAAIGASTFKTVKTPAN--------FNNEIGVPTTI-----LSMPADT 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  +       G      + +       T +G  HI++ +T++    A  ++      +
Sbjct: 155 ELLVIEFGMDRPGDLTFLSEMVHPDIAVLTMIGEAHIEFFKTRERI--ADGKMEIIAGLQ 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  ++Y  D     + +RA        +         L       N    T   +    
Sbjct: 213 PNGVLVYNGDE--PLLRERAGQHAFLHTATFGLNPDNDLYASTIAMNPVGATFQTDKSAM 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G + V NAL A  + I +GI    + + L +  +   R E++  N  G  +  
Sbjct: 271 TYHIPLTGRYNVSNALAAISVGILLGISDDKIAQALAEAPITENRTEWLAGNFGGKILSD 330

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIV 415
            Y     + + +L        +GR I V G   +  +    +   +A  L         +
Sbjct: 331 VYNSNPTAAKEVLHFFAETPVTGRRIAVLGDMLELGEAGPALHASLAEKLDPATIQHVYL 390

Query: 416 TDDNPRSEDPEKIRAEII-----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             D            +++      G      K ++   I      L   D +++  KG
Sbjct: 391 VGD------IMASLEDVLSVNYPAGTVKRYSKDDKATLIADLQADLTADDAVLL--KG 440


>gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 459

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 96/483 (19%), Positives = 173/483 (35%), Gaps = 63/483 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      +          QW++ ++  VS DSRH++ G +FV + G   DGH ++
Sbjct: 3   MKLAEIAKAINAQ------NEIEQWKDIEVTSVSFDSRHLEKGALFVPLQGAH-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A + +S + L +      S+ P+LVV +  K L         K    ++AV
Sbjct: 56  ETAFTNGAAATLWASDHELTN------SDHPVLVVTDPLKALQELGKYYLRKINPIVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I       +      +               P+ L    +   + 
Sbjct: 110 TGSNGKTTTKDMIASILSTQLNVTKTYANFN----------NEIGVPVTLLNMEA---NT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G        +       T +G  HI++  T+    +AKM +   L   
Sbjct: 157 EVVVVEMGMDRFGQLDFLSKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKED 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D     + +RA N   +    G Q             ++       E  D 
Sbjct: 217 GLFVY----DGDEPLLNERAANITQQTTRFGRQLTDDLYATSVNAGSRSIEFKVNEWPDE 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ GE+ V NAL A  +   + I    +   L  + +   R E+  + +    +  
Sbjct: 273 QFTIPMVGEYNVNNALAAMAVAKRLHISPNHIKTALANVELTENRAEWFKSKNGAQILSD 332

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     + + +LK +  +   GR I V G   +  +    +   +A  +          
Sbjct: 333 VYNSNPTAAKQVLKTLAEMPVQGRRIAVLGDMLELGEAAPRLHASLAEQI---------- 382

Query: 420 PRSEDPEKIR------AEIIHGIPGFIEKGNRIEAIRT-----------AIE-MLNKQDV 461
               +P +I+      AE+ H      E+G    AI             A+E  L+  D+
Sbjct: 383 ----NPAQIQEVYLVGAEMAHLQAKLQEQGYPAAAIHYYQADQLDQLTAALEADLHPADM 438

Query: 462 LVV 464
           +++
Sbjct: 439 VLL 441


>gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
 gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
          Length = 470

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 147/402 (36%), Gaps = 27/402 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +   VS+DSR    G +F+AI G++ D H F+PQ   +   A++V+             
Sbjct: 24  VRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLVAR--------TPEN 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P + V +TR+ L   A     +    ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  WSVPAIRVADTREALGALARGWRRQFDLPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 ++           P+ L +  +      +  V +  +  G  +      +    
Sbjct: 136 ATAGNFNNDI-------GLPLTLFRLHAAHR---LAVVELGMNHPGETEQLAKLAEPTVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A            L  E  A+  ADDAY+      A       
Sbjct: 186 VVNNAQREHQEFMATVEAVALEHA-SVIHALSPEGTAVFPADDAYASIWRVAATGNRIID 244

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            ++    +      V    + ++++I       D    + G    +NAL A    +A G+
Sbjct: 245 FALNNAERTTEA-AVQGTFDGKRLSIDTPQGRLDVTLQVLGNHNAHNALAATSAALAAGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
               +   LE    V GR +       +  G  +  D Y    +S+   +  + +  S R
Sbjct: 304 SLDAIQRGLESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAAIDVLASRESPR 363

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
           ++V+   G  GD        +G  A     D      D  R 
Sbjct: 364 VLVMGDMGEVGDNGPVFHREIGAYAKERGVDALYAMGDASRD 405


>gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
 gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
          Length = 464

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 86/467 (18%), Positives = 155/467 (33%), Gaps = 36/467 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      E++   +       +R +  V +D+R  I  G +F A+ G + +GH F+ +A 
Sbjct: 4   LEAGRLAEIME--ARLIRGSPDRIVRAVFTDTREEIPEGALFFALKGERFNGHHFVAEAG 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+GA   VVS           +  +  IL V +    L   A  +       ++ VTG++
Sbjct: 62  AKGALGAVVSR-----LPEQPLPPDFLILEVTDVLAALQRLAHYVRRATGPFLIGVTGST 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +           G  +             P                   
Sbjct: 117 GKTTTKDLLAAVLAVRHRVLATRGNRNNEIGVPLTLLELGPE-------------HEFAV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +     G         +  A   TN+G  H++   + +A   A      + +P E  A
Sbjct: 164 VEMAMRGEGEIAALSALAEPNAAVITNIGEAHLERLGSVRAIARA-KGEILDYIPPEGFA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ A+  + +E   R             + +   L             +     + ++  
Sbjct: 223 VLPAESPFIEE-EARRCRGKVIYFGESDKAQVRLLSYTSLGEKGCVFRVRTATGEEEYQL 281

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG     N      +   +G     V E   ++     R E          I   Y  
Sbjct: 282 PLPGYHNALNCTAVIAIARQLGFSPEEVQEGFRRVQTSGMRLEIEHWRGF-TVINDAYNA 340

Query: 365 TSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420
              S+   L+ +  +  GR  + V G     G+R       +G+ A  +AD+ +V     
Sbjct: 341 NPASMAGALEVLAELGKGRRKVAVLGDMLELGERTVAAHREVGEKAAAVADLLVVV---- 396

Query: 421 RSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E    + A  +  G+P    +      EAIR  +  L   +VL+V
Sbjct: 397 -GERARDLAAGALSAGMPPDRVLAVATVEEAIRQLMNELEGDEVLLV 442


>gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 467

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 162/451 (35%), Gaps = 45/451 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +Q G +FVA+   + DGH F   A+ +GA A++VS+  +            
Sbjct: 27  SGVSIDTRTLQPGDLFVALT-AQRDGHDFAQAALDKGAAAVLVSNPEACSG--------- 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P LVV+N    L         +     + VTG+ GK+SV   +  +  ++G + +     
Sbjct: 77  PRLVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGKTSVKEALAAVFIKAGPAHWSEKSY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+              +  +  G        ++      T
Sbjct: 137 NNHWGV----------PLTLARMPEATR---HAVFEMGMNHKGEISELTRMVRPHVAMIT 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   + +A  +AK  +FE  L  +  A+I ADD ++  +M+    +G   +  
Sbjct: 184 KIAPAHLENLGSMEAIADAKAEIFEG-LEADGVAVIPADDEFAPRLMQAVQGSGAGFMLD 242

Query: 271 G--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                G  + +       +     + V GK  DF   LPG  Q  NA       +  G+D
Sbjct: 243 FGLTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGVVAAALGAGVD 302

Query: 329 SALVLEHLEKLHVVPGR----FEFVGTNSRGGRIYVDYAHTSNSLEMILKNI---RTITS 381
             L L+ L +L    GR    +  +        +   Y     S+      +   +    
Sbjct: 303 PDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFGVLKLRKPSGQ 362

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            R I V G   +     R +   +A  L     D  I   +  R+        + +    
Sbjct: 363 DRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGEGARA------LMDALPAEH 416

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     AI T  E+    DV++V  KG
Sbjct: 417 RAAWCETAESAIETLSELARDGDVVLV--KG 445


>gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 451

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 171/474 (36%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+++        +   +I+ V  DS+ I+ G +FV I+  K DGH ++
Sbjct: 1   MNLKKL-----EEVVDGEG-LQESFHYIEIHGVCIDSKSIKEGNVFVPIIRVK-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYGTP------PKGMPIIFVDDTLFALQQLAQFYRKELNVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++              P+ + +        
Sbjct: 108 TGSNGKTTVKDIISTILSTTHRVHKTKGNFNSQ----------IGLPLTILEMKRDTE-- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E       Q R   I             H            AK +L      K
Sbjct: 156 ---FLILEMGMSEKGQIRNLSIIAQPDIVIITMIGHSHLETLGSKEEIAKAKLEIIDGLK 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    +Y  D     ++ +  N          +     L       ++  V   +     
Sbjct: 213 DEGLCLYNGDE---PLLLKNKNLSSITCKAFGEKYTNDLFPTNVQLDEYGVHFKLNDSKI 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  + NA+V   +     + +  + + L ++++   RF+F+   +    I  
Sbjct: 270 QYDVPLHGKHNILNAIVGIAVGQFYNVPTEKIQKALRQVNITHMRFQFLTAKTGFTIIND 329

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++T+    + ++V G     G   +     +GK+    +   + T
Sbjct: 330 AWNASPSSMKAAIETLQTLNAYKKKMIVIGDMLELGKNAETYHREIGKMLNQESIQYVFT 389

Query: 417 DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  E +  E      I       ++ +     ++++ K+D++++  KG
Sbjct: 390 ----YGELAEIVAEEARKKYDIGKVQSFNSKAKIAEEVLKVITKKDIILL--KG 437


>gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
 gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
          Length = 478

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 146/411 (35%), Gaps = 24/411 (5%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                         VS+DSR    G +FVAI G++ D H F+ +  A+   A +V+    
Sbjct: 20  GATVSGDGSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVAARNVSAALVARVPD 79

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             D SA      P++ V +TR  L   A     K    ++AVTG++GK++V   +  I  
Sbjct: 80  GWDVSA-----VPLVRVADTRAGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFA 134

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  ++ ++      ++           P+ L +  +      +  V +  +  G     
Sbjct: 135 AAVGANERLATVGNFNNDI-------GLPLTLFRLNAAHR---LAVVELGMNHPGETSLL 184

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +       N  R+H ++  T +A            L  E  A+  A+DAY+     
Sbjct: 185 AKIAEPTVALVNNAQREHQEFMATVEAVALEHA-SVIHALNPEGVAVFPANDAYASIWRV 243

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++    +      V    + ++++I      F+    + G+   +NAL A
Sbjct: 244 AATGNRIVDFALNTAERTTAA-AVTGRFDGKRLSIETPEGAFEVTLQVLGDHNAHNALAA 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR----IYVDYAHTSNSLEMILK 374
               +A G+    +   LE    V GR +              I   Y    +S+   + 
Sbjct: 303 TSAALASGVSLDAIRRGLESFGAVKGRLQVKQAALGALAGATVIDDTYNANPDSMRAAID 362

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            + +  S R++V+   G  GD        +G  A     D      D  R 
Sbjct: 363 VLASHASPRVLVMGDMGEVGDHGPEFHREIGAYAKERGIDALYAMGDASRD 413


>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 144/417 (34%), Gaps = 36/417 (8%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            DL++    + + ++        E  +  +S DSR I     F AI G+  DGH F+  A
Sbjct: 8   HDLLHAIQGKALGEV-------PEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + + A  +V+++       ++    + P+ VV++    L+  AS    +    I+A+TG+
Sbjct: 61  VQKSACLVVINAEM----MASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    ++     +G                         P+ LA+  +        
Sbjct: 117 VGKTTAKEMLKLALSSAGKIHVS----------IASYNNHIGVPLTLAQMPAD---AEFG 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +  S  G  +     ++      T +   H+      +   +A      E L K   
Sbjct: 164 IFELGMSHLGEIRFLTHLVRPHIAMITTIAPAHLGNFSGIEEIASA-KSEIFEGLEKTGT 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            ++  DD++ + + +++H  G                L  +     + ++ + ++GK  +
Sbjct: 223 VLLNRDDSFFEFLKEKSHLLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAE 282

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYV 360
            +    G     N L   G+   +       ++ +   +   GR +        G    +
Sbjct: 283 VVHHAVGRHMAQNILATLGIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLI 342

Query: 361 D--YAHTSNSLEMIL---KNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDL 409
           D  Y     S+   +     I     GR I V G     G+R +     + +I    
Sbjct: 343 DESYNANPTSMRAAISVLSQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSY 399


>gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
 gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
          Length = 478

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 134/384 (34%), Gaps = 33/384 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + K++ +S DSR +  G +FVA+   + DGH ++  AI +GA   ++SS           
Sbjct: 22  DWKVSGISIDSREVAKGDLFVALKDLR-DGHEYVSSAIEKGAAGALISSDCG-------- 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P + VDNT   L         +      A+TG+ GK+SV   + QI +  G + + 
Sbjct: 73  --DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGKTSVKEMIAQIFRSKGKAHWN 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +   +               P+ LA+              +  ++ G    R   ++   
Sbjct: 131 VKSFNNHFGV----------PLTLARMPRDTK---RAIFEIGMNTPGEIAPRSRMVRPQI 177

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   H++   T +A  +         L     AI+  +D +   +  R  +    
Sbjct: 178 ALVTKIAGAHLEGMGTIEAVADE-KSDIFCGLEPNGVAILPREDDFFDYMKARVFDCQPT 236

Query: 267 VLSVGYQGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              + + G        L       N  Q T  + G+   F     G+    NA++A  + 
Sbjct: 237 ASLLSFGGAQSEADARLISFEPEGNGSQGTADILGETVSFQLNAIGDHWGMNAVLAILVG 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
              G+ +    + L+      GR   E +        +  D Y     S+   L  +   
Sbjct: 297 RLSGMSAQEAADGLKGYTPPAGRGAAEILKMPFGEITLLDDSYNANPESMRAGLAALGQ- 355

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMG 403
            SGR I + G   +       +  
Sbjct: 356 RSGRKIAILGEMRELGPDADKLHA 379


>gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
 gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
          Length = 870

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 167/477 (35%), Gaps = 38/477 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L           ++ +    S D+R I  G +FVA+ G + DGH ++  AI +GA  ++V
Sbjct: 8   LAATQGRLQSPEKQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLLV 67

Query: 74  S--SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
                 S+ +           ++V++TR+ L  +AS +  +    I+AV G  GK+S+  
Sbjct: 68  ETRHIESMPEAEQERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMKE 127

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +  R+  +          S    ++ L  P  +   +     +      + +    
Sbjct: 128 AIASVLSRNYAT--------FRSWKNYNDLLGIPLSLGRLEPQHEYA-----VLELGCDH 174

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD- 250
            G        +K   G  TN+    + Y  + +        L   L P+    +  +D  
Sbjct: 175 PGELHKLCQMVKPHIGILTNVAPVQLQYFGSLEHLAKELSELLYSLPPEGCFWLNDSDAR 234

Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                    ++  +A   +  +G +       +V        +    E         L G
Sbjct: 235 LVEIVAHYQQQRGSAVPDIRPLGIREINETQIRVGWEGLSFTLEQEGEMGTLTLASRLLG 294

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              +   L A  +  A G+ +  V E LE+L  + GR   +        +   +  +  S
Sbjct: 295 RQHISTMLAAYRIGRACGMSAEEVSEALEQLGPIEGRLNPLPGVYESRLLDDTHNASPGS 354

Query: 369 LEMILKNIRTITS--GRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSE 423
           +   L+ +  +T+  G+ I + G   +    +      +G+ A    D  I+     R E
Sbjct: 355 VLAGLQALDELTNEGGKRIAILGEMLNLGYYQDDWYEQIGEQAASKVDYLIL-----RGE 409

Query: 424 DPEKIRAEII-HGI--PGFIEKGNRIEAIRTAIEMLNKQ-----DVLVVAGKGHETV 472
               I       G+            +A + A   L ++     +V+++  KG E  
Sbjct: 410 RTALIAESARQAGLASEQIELVSTHEDAAQLARAYLEREGEAGRNVVLL--KGSEAT 464


>gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
 gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
          Length = 521

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 151/455 (33%), Gaps = 59/455 (12%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L      ELI              + +V  DSR +  G +FVA+ G + DGH F  +
Sbjct: 6   LRQLAQVLNAELIGIEHASDHAL----VTQVVIDSRKLSTGCLFVALKGARFDGHDFAEE 61

Query: 63  AIAQGAEAIVVSS--------------------------------------AYSLQDFSA 84
           AI  GA A++V+                                       A +  + +A
Sbjct: 62  AITAGAIALLVNKIAMNKQQVDPSLYPSPLKLPFGCQGDRPMSVDNYVIRRAPAANNATA 121

Query: 85  TIRSN---------TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           +              P LVV +TR  L   AS L  +    ++AVTG+SGK+SV      
Sbjct: 122 SKAKGISLKSVPLPIPQLVVQDTRLALGQLASWLRQQVSARVVAVTGSSGKTSVKEMTAA 181

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I ++    + +    S +   + +       P+ L +  +         + + A+  G  
Sbjct: 182 ILRQCKTPTKK---NSHVLYTSGNQNNDIGVPLTLLRLTAE---HDFVVIELGANHLGEI 235

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            +     +  +    NL   H++   +  A   AK  +F  L P+    I      +   
Sbjct: 236 AYSAGLSRPESVLVNNLAAAHLEGFGSLAAVAQAKGEIFSVLPPQGYAIINADSHDWPHW 295

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
               +     R       G       +       +  +       +    L G   V NA
Sbjct: 296 QGMLSQQRVWRFAFNAGDGIDFFASDIKVDSQTTRFILHSPLGSVEISLSLLGRHNVANA 355

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L AA L +++G D   + + L + H  PGR   +        +   Y     S+    + 
Sbjct: 356 LAAAALAMSVGADLEAIAKGLAQSHATPGRLFPILLAEGKLLLDDSYNANVGSMIAAAQL 415

Query: 376 IRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
           +  +   R++ V   G  G+        +G  A  
Sbjct: 416 LAEMPGYRVMAVGDMGELGETAVDCHRQVGSAARQ 450


>gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
 gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 491

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/471 (16%), Positives = 159/471 (33%), Gaps = 20/471 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E++     +     +   I+  + DSR++ +  +FVA  G + DG+L+   AI
Sbjct: 10  MLTCTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAI 69

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHP-ENILAVT 121
             GA  +V++   S +        N  +L    D+ ++FL   AS    K+P   ++ VT
Sbjct: 70  GAGASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVT 129

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +      +  +       + +         T      +        ++ 
Sbjct: 130 GSCGKTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVI-------VAEM 182

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +   E S   L       +    G+               +A   A M   +    K 
Sbjct: 183 GMNHEGEISRMALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKP 242

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGK 298
              +  +DD  +      A  A   V  VG +      +    +  +       +  +G 
Sbjct: 243 ELILHDSDDFTTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGL 302

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                    G+  V +A  A  +C  +G+        L  +  V  R E +        I
Sbjct: 303 MRKVTLSEAGKACVIDACFALRVCEILGVSYDKACCALLHMKQVHMRMEEIKKPHLPLII 362

Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIA 413
              Y     S+   L+ ++    +GR I + G  G+       + G I    A    D+ 
Sbjct: 363 DDSYNAAPASIAQALQVLQQCTCTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMV 422

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    +   E  E   + + +     +   +  EA++    +L   DV++V
Sbjct: 423 VFVGSDHAQEMMEA-ASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILV 472


>gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SSC/2]
          Length = 452

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 152/476 (31%), Gaps = 54/476 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +QD++      L+             KI+ +S++S  I    +FV I+G + D H+FIP 
Sbjct: 6   IQDILEATDGTLL-------CGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPN 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +G  A +                N P + V +T   +   A+    K    I+ VTG
Sbjct: 59  ALKEG-GACLTQEHTEASG-------NAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           + GK++    +  + +        IG   S +      + LT+   I +           
Sbjct: 111 SVGKTTTREMIAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGV----------- 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  S  G      + I    G  TN+G  HI+   ++      K+ +   L    
Sbjct: 160 ---LEMGMSEKGQITTLGNIIHPNVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDG 216

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   +D   K +    +           +      +K+     +             
Sbjct: 217 VLFLNGDNDMIRKHI---DYVKKPYEFYGFAEDCTYRAEKIREKGGQTLFEFHYGDMKEP 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+  V NAL A  + +   +  + +   L          +          I +D
Sbjct: 274 ITLNVLGKHNVSNALAAIAIGLRYDVPMSAIKAQLSTFSG-----QRQNIIHVNDYILID 328

Query: 362 YAHT--SNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
            A+    +S++  L  +      GR I V       G         +G+ IA        
Sbjct: 329 DAYNASPDSMKASLSILSEFKTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLF 388

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +T      E       E     P        +  E I      L K DV+++  KG
Sbjct: 389 IT-----GELSRHYIEEAWKENPSLHTRAFSSNGELIAFLETYLKKNDVVLI--KG 437


>gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
 gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
          Length = 446

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 36/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G         +             P               
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE  L  
Sbjct: 151 HYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR            I  
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
            Y     S+   +  +     G  ++V G     G   +     +GK A
Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377


>gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 453

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 160/476 (33%), Gaps = 54/476 (11%)

Query: 1   MK-----LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MK     L+ ++      + +            +I  ++ DSR ++ G +F+  +G   D
Sbjct: 1   MKYLVTDLEKILNAKKANITS----------NVEITGIAIDSRKVKQGDLFIPFLGENVD 50

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH FI  A  +GA A +      + + +        I+ V+++ + +   A         
Sbjct: 51  GHNFIESAFEKGAAASLSLKDDFVSENN--------IIYVNDSYEAIQTLAKHYLESLNA 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  +           G          +N L  P  I  A   S
Sbjct: 103 KTIAITGSNGKTTTKDIITSVLSTKYKVHKTQGN--------FNNELGVPITILAAPEDS 154

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +       + + A   G        ++      TN+G  HI++ ++++    AK  +  
Sbjct: 155 EIL-----VLEMGADDFGQLDFLSKLVEPDYTVITNIGESHIEFFKSREGIAKAKFEITN 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +                + ++K   ++     +   +  +  +        + ++   +
Sbjct: 210 GMKKDGYFVYN-----GDEVLIKTLVDSSEINATSCGENSYNDIILESYTITRDKIDFKL 264

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSR 354
              D  +   L G+  +YN + A  +   IG+ +  + + +   + +   R + +     
Sbjct: 265 NISDEQYFTKLKGKHNLYNIMFATAIASKIGLTNEEIHKAIENTVEITGMRLQSIPYKED 324

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLA 410
              I   Y  +  S++  +  + +        +        G  +      +G+   +  
Sbjct: 325 SLIINDAYNASPTSMKAGVDVVSSYDDFDYKTLVLGSMFELGPNEVNYHGEVGEYISENT 384

Query: 411 ---DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              D+ I   D       E I  +I +     +      E         +K +V++
Sbjct: 385 NDIDLVISVGDL-----AENITKQIKNDKIKTLHFPTTAEVSEYLKNNKHKNEVIL 435


>gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 452

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 151/476 (31%), Gaps = 54/476 (11%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +QD++      L+             KI+ +S++S  I    +FV I+G + D H+FIP 
Sbjct: 6   IQDILEATDGTLL-------CGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPN 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +G  A +                N P + V +T   +   A+    K    I+ VTG
Sbjct: 59  ALKEG-GACLTQEHTEASG-------NAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           + GK++    +  + +        IG   S +      + LT+   I +           
Sbjct: 111 SVGKTTTREMIAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGV----------- 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  S  G      + I    G  TN+G  HI+   ++      K+ +   L    
Sbjct: 160 ---LEMGMSEKGQITTLGNIIHPNVGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDG 216

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   +D   K +    +                  +K+     +             
Sbjct: 217 VLFLNGDNDMIRKHI---DYVKKPYEFYGFADDCTYRAEKIREKGGQTLFEFHYGDMKEP 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               + G+  V NAL A  + +   +  + +   L          +          I +D
Sbjct: 274 ITLNVLGKHNVSNALAAIAIGLRYDVPMSAIKAQLSTFSG-----QRQNIIHVNDYILID 328

Query: 362 YAHT--SNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
            A+    +S++  L  +      GR I V       G         +G+ IA        
Sbjct: 329 DAYNASPDSMKASLSILSEFKTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLF 388

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +T      E       E     P        +  E I      L K DV+++  KG
Sbjct: 389 IT-----GELSRHYIEEAWKENPSLHTRAFSSNGELIAFLETYLKKNDVVLI--KG 437


>gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 482

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/471 (16%), Positives = 159/471 (33%), Gaps = 20/471 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E++     +     +   I+  + DSR++ +  +FVA  G + DG+L+   AI
Sbjct: 1   MLTCTTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHP-ENILAVT 121
             GA  +V++   S +        N  +L    D+ ++FL   AS    K+P   ++ VT
Sbjct: 61  GAGASCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVT 120

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++    +      +  +       + +         T      +        ++ 
Sbjct: 121 GSCGKTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVI-------VAEM 173

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +   E S   L       +    G+               +A   A M   +    K 
Sbjct: 174 GMNHEGEISRMALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKP 233

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---GKFIHLKKVCAIHNKQQVTISVEGK 298
              +  +DD  +      A  A   V  VG +      +    +  +       +  +G 
Sbjct: 234 ELILHDSDDFTTFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGL 293

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                    G+  V +A  A  +C  +G+        L  +  V  R E +        I
Sbjct: 294 MRKVTLSEAGKACVIDACFALRVCEILGVSYDKACCALLHMKQVHMRMEEIKKPHLPLII 353

Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIA 413
              Y     S+   L+ ++    +GR I + G  G+       + G I    A    D+ 
Sbjct: 354 DDSYNAAPASIAQALQVLQQCTCTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMV 413

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    +   E  E   + + +     +   +  EA++    +L   DV++V
Sbjct: 414 VFVGSDHAQEMMEA-ASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILV 463


>gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
 gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
          Length = 456

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 166/480 (34%), Gaps = 53/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E  N LS    ++ +  +N++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLSLYEVAKVVEAQNSLS----EFDDVPLNQIEFDSRKITKGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V +  K   + A     K   +++AV
Sbjct: 56  DMAFENGAVATFSEKEI----------PGKPYLLVKDCLKAFQMLAQYYIEKMRLDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    ++ +   +  +    G             L  P               
Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQDHM 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E +   +    L G              H+++  +++    A+ ++       
Sbjct: 165 GDIHLLSEIAKPHIAVVTLIG------------EAHLEFFGSREKI--AEGKMQIIDGMD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G    +        K  +T +    D 
Sbjct: 211 SHGILIAPGDPIIDPYLPENQMLI-------RFGDNQEIYVKDIQERKNSLTFTTNVLDR 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G++   NA++AA +   + ++   ++E LE + +   R E+    +    +  
Sbjct: 264 AITLPLSGKYNASNAMIAAYVGKLLAVEDDDIIEALENIQLTKNRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL++  ++     G+ I V     +       +  +I   L+    D  
Sbjct: 324 VYNANPTAMRLILESFSSLTPENQGKKIAVLADMKELGPKSVELHQQIITALSPDKIDHL 383

Query: 414 IVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
           +   ++   E   ++ +++            E  ++ +A+     E+L   D L++  KG
Sbjct: 384 VFYGNDI--ESLAQLASQMYPIGKVYFFKKTEDQDQFDAMANHVKEILEANDYLLL--KG 439


>gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2]
          Length = 471

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/412 (14%), Positives = 140/412 (33%), Gaps = 25/412 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      + +Q+    +  ++ +++ VS+D+R I +G +++A+ G   +GH F   A  
Sbjct: 1   MITTTLSWIASQIDG-KLDGQDCEVSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAEN 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA AI+ S   ++         + P++ V++T+  L L  + +  +     +A+TG+SG
Sbjct: 60  AGASAIIASEPVNV---------SIPVVYVEDTKLALGLLGAAVKREIAPKTIAITGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I +R G      G  +               P+ L +   +     +   
Sbjct: 111 KTTVKEMCAAILERRGSVLATNGNFN----------NDIGVPLTLLRLEHHHEYAVMELG 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +          + +        +      +            +   +   +         
Sbjct: 161 ANHLGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLGDSGTAIVNVD 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D +  ++ ++       +           +  +  +       +     +      
Sbjct: 221 SQFADFWQGKLKQKRVLTFSPMQKNEADFTAEDI--IVGLDGCAAFQLCSNEGEAAIQLI 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V N LVAA L + +G     V + L  +  V GR       S+   +   Y   
Sbjct: 279 IPGIHNVGNVLVAAALTMQLGATLENVRDGLLAMKQVKGRLNVKTLGSQVRLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI 414
             S+   +  + T +   ++++      G++ +     +G  A     D   
Sbjct: 339 VASVNAAIDTLSTFSGINVLILGDMKELGEKARFYHEQVGNYALSKGIDYLY 390


>gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1346]
          Length = 474

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGDLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 462

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 167/475 (35%), Gaps = 41/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   L   +  + +  +           I  V+ +S+ I+ G +F+ +   + DGH FI
Sbjct: 1   MK--ALAINEIVKAVGAVDYDSTAAHNL-ITSVAFNSKEIKPGGLFIPLKAAR-DGHDFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA+A + ++        A   S  P++ V++T       A    G     ++AV
Sbjct: 57  QDAIDHGAQATLWAND------PADAPSEIPVIQVEDTFTAFVDLAKYYLGLIGPKVIAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++           +       G          +N+L  P  I     LS     
Sbjct: 111 TGSAGKTTTKDMTAATLSTTFNVYKTQGN--------YNNQLGVPFTI-----LSMPEDT 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +  S  G  +       +     T +G  HI++  +++    AK+ + E L   
Sbjct: 158 EVLVVEMGMSGPGEIRFLAQLCPMDVAVITMIGESHIEFLGSRENIAKAKLEILEGLKED 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +      +    + V+        RV     +  +         H      +S   +  
Sbjct: 218 GTFIYPGDEPLVDQAVVDMPEIKKIRVGLDDSEDVYAENIVNEREHTHFYTNLSPNVE-- 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G++ V NAL+A  +  + G+    +   L +  +   R E++        +  
Sbjct: 276 -LSIPVSGDYNVKNALMACAVAYSQGLAVEQIKTPLSQFKLTANRSEWLMGKDDIQILND 334

Query: 361 DYAHTSNSLEMILKNI----RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD----LADI 412
            Y    +++  +++N     R   +   ++V G   +  +    +   IA +      D 
Sbjct: 335 TYNANPSAMRAVIRNFSQLERPAVTSHKVLVLGDMLELGKYSASMHASIAEEIDSPHIDG 394

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +       E     RA    G P         ++   I+  ++ +  QD ++V
Sbjct: 395 VYL----YGKEMQALARALQEKGYPEDKIHYYPEDKAALIKDLLDQVQSQDQILV 445


>gi|315931390|gb|EFV10359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Campylobacter jejuni subsp. jejuni 327]
          Length = 98

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNK 458
           MG I    A IAI+T DNPRSE+P+ I  EI+ G       +   +R EAI+ A+E+   
Sbjct: 1   MGTIVEHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKEN 60

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            D++V+ GKG ET   +  G K    D  ++ EIL
Sbjct: 61  DDLVVILGKGDETTQEIK-GIKYPFSDKVVVNEIL 94


>gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halorhodospira halophila SL1]
 gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Halorhodospira halophila SL1]
          Length = 450

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 141/391 (36%), Gaps = 40/391 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ +      ELI              +  V+ DSR   +G +FVA+ G + DGH F   
Sbjct: 6   LEQIAALTGAELIGNGGGA--------VTGVALDSRRATSGSLFVALPGARCDGHDFADD 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A A+GA A++ +                P LVV++    L++  +    +    ++AVTG
Sbjct: 58  AAARGAVAVLGTRPVGA----------LPTLVVEDPAAALAVLGAECRRRSGVRLVAVTG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++V   +  +   SG +    G         ++N L  P            +    
Sbjct: 108 SNGKTTVKELLAAMLAESGPTLATEGN--------RNNLLGVPE-----MLCRLGAGHRF 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A++ G         +   G  TN G  H++   +      AK  LF+  LP++ 
Sbjct: 155 AVIEMGANAPGEIAQLTAWAQPDVGVVTNAGPAHLEGFGSLDGVARAKGELFQG-LPRQG 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD +     + A    C                           + + G     
Sbjct: 214 VAVLNADDDFCGLWREMAGARRCLTFGADAGQFRHRGHGSRL-------ELDLGGGWMAA 266

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G     N   AA    A+ + +  +L+ +     VPGR E    +  G  +   Y
Sbjct: 267 PTPLLGGHNAQNIAAAAACAAALEVPARTILDRISSAAAVPGRLELRRGDHGGWLVDDTY 326

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
                SL+  +  +    +    ++ G  G+
Sbjct: 327 NANPASLQAAIDTVTGFQAA-PWLLLGAMGE 356


>gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 472

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 156/473 (32%), Gaps = 41/473 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   P    +    +   V  DSR ++ G +F A  G + DGH +  +
Sbjct: 1   MIALSLAEIAGIVGGQPHDVPDLSATVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAER 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++ +                P +VVD+    L   A     +    ++A+TG
Sbjct: 61  AVEAGAVAVLAARPV-----------GVPAIVVDDVVAALGALARAAVERLGTTVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + QI +R   + +  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQILERKAPTVWTPGSLNNEIGLPLTALRATAE-------------TRH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++         G   N+G  HI    +++A   AK  L E  LP++ 
Sbjct: 157 LVLEMGARGIGHIEYLAGLTPPRIGLVLNVGSAHIGEFGSREAIAQAKGELVEV-LPEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD   + +  R                     ++     +    +       D 
Sbjct: 216 AAVLNADDPLVRAMASRTKARVILFGEAPDADVRGENVRLTDDG-RPAFALHTPTGCSDV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361
              L GE  V NAL AA +   +G+    + + L         R E          +   
Sbjct: 275 TLRLYGEHHVSNALAAAAVAHELGMSVTEIADALSGAGTLSRWRMEVTERPDGVTVVNDA 334

Query: 362 YAHTSNSLEMILKNI------RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411
           Y     S++  L+ +      R    GR   V G     GD    +   +G++A+ L   
Sbjct: 335 YNANPESMKAALRALAAMGKARQAAGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVS 394

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +       S        E   G        +   A+      L   DV++V
Sbjct: 395 KLVAVGGQEASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446


>gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 452

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 157/462 (33%), Gaps = 36/462 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   +   L   P    +  +  V++D+RH+  G +FVA+VG + DGH F+ QA A GA 
Sbjct: 5   NVQTIATWLGAPPPDV-DAPVTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGAV 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A VVS   +              + V +TR  L + A          ++AVTG SGK++V
Sbjct: 64  AAVVSRRVASP---------LAQIEVADTRLALGILARAARRAWSGELVAVTGNSGKTTV 114

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I  R   +    G  +                      L+  S+     + + A
Sbjct: 115 KEMLAAILSRVHPTLATRGNLNN-------------DIGAPQTLLALSSAHRRAVIELGA 161

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G                TN+   H+           AK       L     A++  D
Sbjct: 162 NHLGEIAWTTSLAIPDVAVITNVTGAHVGEFGGIGRIAQAKA-EILLGLSASGTAVLNRD 220

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
           D +     + A +A      +    +       C    +   T+ V+G         L G
Sbjct: 221 DRFYPMWRELAGDAEVLDFGLDPAARVRAEALACDDDGRYAFTLFVDGVSLGRVRLALLG 280

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + V NAL +A    A+ + +  ++  LE    +PGR   V        +   Y     +
Sbjct: 281 RYNVRNALASAAAAWALRVPAEDIVAGLEACRTMPGRMMNVPGIRGTRLLDDTYNANPGA 340

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +   L  +  + + R   +   G  G   +     +G++A +L    + T          
Sbjct: 341 VRAALAVLAEMPAPRWCFLGALGELGAESERLHADLGRVARELKIDFLGTFG-------A 393

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             R  +           +    +R A + L     ++V  KG
Sbjct: 394 DARPAVAAFGDRGCHFDDWAALVRYAHDHLPPGASVLV--KG 433


>gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 448

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 157/454 (34%), Gaps = 53/454 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   ++     +  +  +   S +S+ I    +F+ + G++ DGH F
Sbjct: 1   MNL------WLSEIAKAVNGELKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENIL 118
           + +A+  GA + +    +             P + V +T   L   A       +   ++
Sbjct: 55  VKEALQNGAISFISQKDFD--------DLKVPYVKVGDTLLALQSLAYFARRKLNDLKVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +      +    G  +                           
Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPED------------ 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  S+ G         K   G  TN+G  HI+  +++   F AK  + + + 
Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQITKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMP 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   +D  +    +         +      +  +++K        Q   S E  
Sbjct: 214 ESGILIINNDNDILNLHKKEFKRKVVTIGIENESNFRAQNVQK-------HQNGFSFEVD 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           ++ +         +YN+L A  +   + ID  L+ E + +   +  RFE     ++G   
Sbjct: 267 NYTYFIKSFNFHDIYNSLFAIAVGTILEIDRELIKEAIRQKERLKRRFEV---INKGSIT 323

Query: 359 YVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADI 412
            VD  Y  +++S+   + +I     G+ I+V G     G+  + +   +G+ I     D+
Sbjct: 324 VVDDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDV 382

Query: 413 AIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444
            I T      +D   I  E     G+  +    +
Sbjct: 383 VICT-----GKDAFYIFDEAKKKDGVKAYFVSKD 411


>gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 453

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 149/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F+ QA+A GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
 gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
          Length = 458

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 158/451 (35%), Gaps = 41/451 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                V +DSR ++ G +FVA+ G + D H FI   +A+GA A++VS             
Sbjct: 19  VPFARVHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAAVLVSREVDAA------- 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P +V  +TR  L    +    +     +AVTG++GK++V   +  I   +     ++
Sbjct: 72  --VPAIVAPDTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIAAIFAAAVGEDQRL 129

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLS----SQGVTHVSVEASSHGLDQHRLDGIK 203
                +++           P+ + +  +         G+ H        G+ Q  +    
Sbjct: 130 ATGGNLNNDI-------GLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQPTV---- 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII-YADDAYSKEVMKRAHN 262
                 TN  R+H ++  + +A  +        L           A+   +   + RA  
Sbjct: 179 ---AVITNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDAESGGAYAPVWRAAA 235

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              RVLS G   +      V  +   Q + +   G  F+    L GE  V NAL A    
Sbjct: 236 GTRRVLSFGTTQQADVHATVELVDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACA 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G+    +   L +   V GR +   T +    I   Y    +S+   +  +    + 
Sbjct: 296 LAAGVHVPAIQAGLAEFKPVKGRLQVKYTPAGTVVIDDTYNANPDSMRAAIDVLAGFAAP 355

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           R++V+   G  GD+       +G  A     ++   T      E               F
Sbjct: 356 RVLVLGDMGEVGDQGPAFHDEIGAYAQARGIEVLWAT-----GELAVHAVQAFGANGRHF 410

Query: 440 IEKGNRIEAIRT--AIEMLNKQDVLVVAGKG 468
               +  +A+       +      ++V  KG
Sbjct: 411 GSAEDLAKALEEDSGGMVAQAG-AVLV--KG 438


>gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mesorhizobium loti MAFF303099]
 gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium
           loti MAFF303099]
          Length = 477

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 161/476 (33%), Gaps = 48/476 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +      L+  +   P+      I+ +S DSR +Q G  F AI G   DGH F   AI  
Sbjct: 3   LLWTSDALVAAMDGRPLGPMPEGISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAAIKA 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VV+         +  R   PI+VV++    L         +    I+AVTG++GK
Sbjct: 63  GAGVLVVAEG----KLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    ++ +    G         +               P+ LA+           +  
Sbjct: 119 TTTKEALRHVLSAVGKVHASAQSFNNHWGV----------PLTLARMPD-----NCDYAV 163

Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            E   +  D+ R  +  ++      T +   H+ + +       AK  +FE L P+   A
Sbjct: 164 FEIGMNHPDEIRPLVKMVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEG--A 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD 301
            +   D    +++ +  +A       G+         L K     +   +   + G D  
Sbjct: 222 AVLNRDDGRFKLLDKMAHAAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMI 281

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYV 360
                PG   V N L   G    +G D   V   L  L    GR +        G    +
Sbjct: 282 ARIGAPGRHMVQNVLAVLGAAQLVGADLNKVALALADLSAERGRGKRHVLRHPGGPITLI 341

Query: 361 DYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIALDLADI 412
           D ++ +N   M         +     GR I V G     GD          K+   LAD+
Sbjct: 342 DESYNANPASMAAAMALLNATPVTGEGRRIAVLGDMLELGDHS-------AKLHAALADL 394

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----AIEMLNKQDVLVV 464
            + T          +    +   +PG I+   R   +       +  L   DV+++
Sbjct: 395 IVGTGTQTVFLGGPE-MRALAEALPGDIKMEYRA-GVEQLKPVLLAALKPGDVVMI 448


>gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 446

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 142/409 (34%), Gaps = 36/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ G +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G         +             P               
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE  L  
Sbjct: 151 HYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSEGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR            I  
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVSVKGRLVEQKGYRGAIIIDD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
            Y     S+   +  +     G  ++V G     G   +     +GK A
Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377


>gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 507

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 87/399 (21%), Positives = 149/399 (37%), Gaps = 34/399 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +D+R IQAG  F+AIVG   DGH F+  AI +GA A++VS                
Sbjct: 47  TRIITDTRKIQAGDTFLAIVGENFDGHNFVTAAIEKGAIAVIVSQPIEALA--------V 98

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P L VD+TR      A+    +H +  ++A+TG+SGK++V   ++ I  +   ++     
Sbjct: 99  PQLKVDDTRLAFGQIAAYRRQQHAKLKVIALTGSSGKTTVKEMLRHIFTQVEAANNAEQS 158

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T+ ++    +N    P        L          + + A+  G   +    +K      
Sbjct: 159 TTLVTRGNLNNDFGVP-----MMLLELEQQHRYAVLELGANHVGEIAYTTAMVKPDVACI 213

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+     +      K     + L + S A++  DD Y++++   A      V+ 
Sbjct: 214 LNIGTAHLGEFGGRDNIAKTKA-EIYQSLTESSTAVVPFDDDYTQQLTAVAKQHTPHVIH 272

Query: 270 VGYQGKFIHLKKVC----------------AIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
            G+Q    +  K                      K    +  +    D   P+ GE  V 
Sbjct: 273 YGWQHLQHNSDKADSSQPQVYATEVQTTALQSCFKLHFDLDSQTSVVDITLPMSGEHNVS 332

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA    A GI   ++   L +     GR            I   Y    NS+    
Sbjct: 333 NALAAAACAYASGIAPEVIAAGLNQATSSKGRLGRQTLGMH-HIIDDTYNANPNSMRAAA 391

Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA 410
             +      +++V+   G  GD    +   +G+   + A
Sbjct: 392 DVLAAQAGYKVLVLGDIGELGDASSEEHYKLGQAIANKA 430


>gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
 gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
          Length = 470

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 145/402 (36%), Gaps = 27/402 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +   VS+DSR    G +F+AI G++ D H F+PQ   +   A++V+             
Sbjct: 24  VRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQVAERNVAAVLVAR--------TPEN 75

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N P + V +TR  L   A     +    ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 76  WNVPAIRVADTRAALGALARGWRRQFEMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 ++           P+ L +  +      +  V +  +  G  +      +    
Sbjct: 136 ATAGNFNNDI-------GLPLTLFRLHAAHR---LAVVELGMNHPGETELLAKLAEPTVA 185

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A            L  +  A+  ADDAY+      A       
Sbjct: 186 VVNNAQREHQEFMATVEAVALEHA-SVIHALSPQGTAVFPADDAYASIWRVAATGNRIID 244

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            ++    +      V    + ++++I       D    + G    +NAL A    +A G+
Sbjct: 245 FALNSAERTTEA-AVKGTFDGKRLSIDTPQGRVDVTLQVLGNHNAHNALAATSAALAAGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
               +   LE    V GR +          G  +  D Y    +S+   +  + +  S R
Sbjct: 304 SLDAIQRGLESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAAIDVLASRASPR 363

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
           ++V+   G  GD        +G  A     D      D  R 
Sbjct: 364 VLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRD 405


>gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 442

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 142/439 (32%), Gaps = 42/439 (9%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL 93
           S D+R   AG ++ A+ G   DGH FI  A+ + A A+VV  AY +             L
Sbjct: 27  SVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRASALVVERAYGVPGE----------L 76

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           VV +T + L    +         ++ VTG++GK++    +  +          +G  +  
Sbjct: 77  VVPDTLRALQNLGAWARRNWGGTVIGVTGSAGKTTTKDAIAHLLASEMPVGKTVGNFNNH 136

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                         + L         +   + S E    G       G+       TN+G
Sbjct: 137 VGVPLSL-------LRLPDGCRAGVIEMGMNHSGEIRELGAIARPEIGV------VTNVG 183

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             H+++  + +    AK  L E  L  +  A++ ADD                     + 
Sbjct: 184 YAHVEFFDSIEGIALAKRELIEG-LTPDGVAVLNADDPRVAGFSAVHPGRSITFGLSEHA 242

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                     A   + +          +F   L G   V N L A  +    GI  A + 
Sbjct: 243 EIRAEDVAAHAGGTRFRAL------GMEFETGLSGRHAVMNLLAAIAVATVFGIAPARMR 296

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-- 391
           + +        R E    N         Y     + + ++  +R   + R I V G    
Sbjct: 297 DAVASFAAGKMRGERTEHNGIVIWNDC-YNSNPEAAQSMIDVLRETPARRRIAVLGEMLE 355

Query: 392 -GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G         +G+ A +   D+ I      R      + +    G+       +  EA 
Sbjct: 356 LGHAADELHRQVGRYAAEHGVDLLI----GVRGAARAMVESAARAGLD-ARFFEDPAEAG 410

Query: 450 RTAIEMLNKQDVLVVAGKG 468
             A E+ +  D ++   KG
Sbjct: 411 DRARELAHAGDAVLF--KG 427


>gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
 gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
          Length = 453

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 149/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F+ QA+A GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQAVAGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
 gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
          Length = 467

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 141/405 (34%), Gaps = 25/405 (6%)

Query: 11  FPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             +++          ++R+I    V  D+R +  G +FV +VG   DGH +I QA+  GA
Sbjct: 6   LMDVVKYTKAIDYTAKDRQISITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGA 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A + S+     D +     +  ++ VD+T + L   A+         ++ VTG++GK++
Sbjct: 66  VATLWSA-----DPAQAPSDDLAVVFVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
                  + Q         G                  P  L +         V  + + 
Sbjct: 121 TKDMTAMVLQAKYRVHKTQGN----------YNNEIGLPYTLLQM---PEDTQVAVIEMG 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +   +  +    + T +G  H+++  ++     AK+ +   L P         
Sbjct: 168 MSDFGEIKQLSEIAQPDIAAITLIGESHLEFLGSRAGIAQAKLEILYGLKPNGVLLYPAN 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +     E+ +       R               V  +      T      +     P+ G
Sbjct: 228 EPLIESEMPEIDQPIYLRSFGFTDHADAFAYDMVEEVDRTYFKTNLEP--NVTCTIPVLG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + V NAL+A  +   + +     +  L    +   R E++ T+     +   Y  +  S
Sbjct: 286 AYNVSNALIALSVAELLDVPLEQAIFQLANFQLTANRLEWLTTHQGARLLNDAYNASPTS 345

Query: 369 LEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +  +LK++  +      R I V G   +  +    +   +A  LA
Sbjct: 346 VLAVLKSLAALNLAPGQRRIAVLGDVRELGEASAQLHRSLAQGLA 390


>gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
 gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
          Length = 453

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 152/395 (38%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISAVSTDSRTIPAEALFVALVGERFDAHDFASQAVIGGAVALLVEHE-------- 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 71  -LDADCSQLVVADTKQALGQLGAWVHTQCKTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   + +    A      + L + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIEGVKRA-KGEIYQGLREGAVAIVNLDSNGGEHWKTVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEIAHGLAHLSKVKGRVDLTHLRDDITLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A   +   ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFSFEFVLT 390


>gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/496 (15%), Positives = 157/496 (31%), Gaps = 55/496 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+++       L+   +                DSR I  G +F+AI G + DGH ++
Sbjct: 4   MSLEEIAQAVQGRLVAGTAAANTPVATSAFT----DSRQIVEGSVFIAIAGERVDGHDYV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115
           P   AQGA A +V    +         ++ P +VV++T   L L A     +      P 
Sbjct: 60  PHVGAQGAVAAIVDHEIA--------DADVPQIVVEDTVLALGLLAKHNIERRRALGTPF 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    ++ +    G +   +G  +               P+   K  +
Sbjct: 112 TVVGITGSVGKTTTKDLMKALLSHMGSTVAPVGSFN----------NEIGLPLTSLKVNA 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +    +         +G  H+    + +    AK  +  
Sbjct: 162 ETR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIIH 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L+P     +   D+  +        +     L  G  G      +          + ++
Sbjct: 219 GLVPGGLSVLNANDEHVAAMSAFAPGDVMWFGLPNGDGGNPAITAQHVRCDELDHPSFTL 278

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRF---EF 348
           +  D +      G    +N + A                +     +   + P R      
Sbjct: 279 KNGDGEHAEVTLGICGQHNVMNALAAASVAMRLGMSIDEVASALSDVTTISPHRMAVSTV 338

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRP 400
               +    I   +    +S++  L  +    +G       I V G     G  ++    
Sbjct: 339 NKQETSFTLIDDSFNANPDSMKAGLDGLLRWKAGSESQPFRIAVLGTMLELGPDEKDLHV 398

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIE 454
            +G+ AL+    A++T  +      + +   +  G              +  EA R    
Sbjct: 399 GIGRYALEGGVDALLTVGSASDASLDALAGAMADGASLAGDASHVDWVHDIDEADRLVTR 458

Query: 455 ML--NKQDVLVVAGKG 468
           +   +   V+++  KG
Sbjct: 459 LAVEHPGAVVLL--KG 472


>gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 453

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 149/457 (32%), Gaps = 38/457 (8%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL+  L++         I+ V +DSR ++ G +FV   G + DGH F   A   GA  I
Sbjct: 7   NELLAGLTLAEP----VSIHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYI 62

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           + +          T       +VV ++   +   AS         I+ VTG+ GK++   
Sbjct: 63  IANHPVDGVPADRT-------VVVPDSALAMVRMASNYRMLFSPRIIGVTGSVGKTTTKE 115

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           F   +    G +    G         Q+N +  P            S+     V +    
Sbjct: 116 FCYAVLSAFGNTLKTEGN--------QNNEIGVP-----NTLFRLESATEYAVVEMGMDH 162

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +     ++  AG  T +G  H++   T++    AKM +   L       +    D 
Sbjct: 163 AGEIERLTRCVRPSAGIITMIGVSHLENLGTRENILKAKMEICAGLPDGAPLVL--NADN 220

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 +           +  +                   +  E   F    P  G   
Sbjct: 221 DLLPTAQVPGRLRAVWFGIEQEADVRAENIQTGAQGTTFTLVDREYGRFPVSIPTAGLHT 280

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VY+AL A      +G+D A   + L +      R   V            Y  + +S++ 
Sbjct: 281 VYDALSAYAAATRLGLDPANCAKALSRYQTTGMRQHIVERGGVTVIEDC-YNASPDSMKA 339

Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEK 427
            +  ++ + + R I + G     GD  +      G+ +A    D  I     PRS     
Sbjct: 340 AISVLKALPNKRKIALLGDMLELGDASEEGHRHTGEWVAEAGVDTLI--AYGPRS----A 393

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLV 463
           + AE             + + +   ++  +   D L+
Sbjct: 394 VMAEAAQARGVTTVHCQKAQEVLQCLQQFVQPGDALL 430


>gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
 gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
          Length = 457

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 184/466 (39%), Gaps = 36/466 (7%)

Query: 5   DLIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L+   F E++  +     +     K N +S+D+R I    IFVA+ G+  + + +I  A
Sbjct: 2   ELLK--FEEIVKAVRGKVHINSGNHKYNNISTDTRKITKDSIFVALKGDNFNANDYIVDA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +G+   +V     ++   + +  NT I++V+NTRK L   A     K    ++ +TG+
Sbjct: 60  SVKGSNLCIVD---EIKFKDSDLNENTSIILVENTRKALLDLAELYRSKLDIKVIGITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S                   G  +                + L   +  L +    
Sbjct: 117 TGKTSTKDLTAAALSSKYKVFKTQGNFNNE--------------VGLPLMIFSLDNSYDV 162

Query: 184 HVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            V     S+  + HRL  + K      TN+G  HI+  +T++    AKM + +       
Sbjct: 163 AVLEMGMSNFDEIHRLAKVAKPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSV 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFD 301
             +   +D     ++K   +   +++S+G++    +  + +    N  + T+  + +   
Sbjct: 223 LIVNKEND-----LLKTVKSNDYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKER 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P+PG+  + N+++A      +GI+   + + ++ L V   R + V  +     +   
Sbjct: 278 FNIPVPGKHNILNSMLAIVAGRTLGIEYDKLKQGIKNLSVTSMRLDIVKKDGF-TIVDDS 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  + +S+   +  I TI   R I + G     G         + + A +     ++T  
Sbjct: 337 YNASPDSMRAAIDVINTIKGNRKIAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVG 396

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E    +I      F+      +A       LNK+D+++V
Sbjct: 397 EFNEAYKEGYNNDI-----NFMAFDTIEDASDFITNNLNKEDIILV 437


>gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
 gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
          Length = 454

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 155/457 (33%), Gaps = 41/457 (8%)

Query: 11  FPELINQLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E+++  S+        K++  + +D+R +Q G +FVA+ G K DGH F+  AI +GA 
Sbjct: 10  LVEILSASSVNLSASALTKVSKSIQTDTRILQPGEVFVALRGEKFDGHEFVAMAIVKGAI 69

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +V  AY    F        P+L V +T K            +   ++ VTG+ GK++ 
Sbjct: 70  AAIVDYAYENPVF--------PVLQVTDTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +    G      G  +               P  L +  +         + +  
Sbjct: 122 KELIAAVLATKGQVHKTYGNFN----------NEIGVPKTLLELGAE---HDFAVIEMAM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G         +   G  TN+G  HI+   +++A   A        +P +S AI+  D
Sbjct: 169 RGRGQIAELTQIARPTIGVITNVGTAHIELLSSEEAIAEA-KCELLAEMPNDSVAILNYD 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                E  K+                   L     +                   PLPG 
Sbjct: 228 SPLLMETAKKFWQGKVISYGFSGGDIQGKLIDNETVEVAG----------IGLPLPLPGR 277

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  +   + ID    L+    +++  GR +     +    +   Y     ++
Sbjct: 278 HNATNFLAALAVAKVLEIDW-QSLQAGVIVNMPNGRSQRFTLPNDVIILDETYNAAPEAM 336

Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L+ +  I   R I V G     G+R Q     +G++   L    ++   +  S+D E
Sbjct: 337 LAALQLLADIPGKRKIAVLGVMKELGERSQQLHQQVGEMVQKLNLDGLLLLVD--SKDAE 394

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I      GIP         + I      +   D L+
Sbjct: 395 FIANS-AKGIP-CECFATHADLIARLKTFMQAGDRLL 429


>gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Kitasatospora setae KM-6054]
          Length = 467

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 163/473 (34%), Gaps = 42/473 (8%)

Query: 6   LIYKDFPELINQLS-IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E    +         +  I   V +D+R I+ G +FV + G + DGH +  +A
Sbjct: 1   MIALTLAEAAQAVGGTLDGADPQALITGAVVTDNRRIEPGGLFVCVRGERVDGHDYAAKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTG 122
           +A GA A++ +                P ++VD+    L   A  +  +  +  +  +TG
Sbjct: 61  VADGAVAVLATRPV-----------GVPAILVDDVVVALGRLARAVVARAADVRIVGLTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK+S    + Q+    G + F  G  +             PS                
Sbjct: 110 SSGKTSTKDLIAQVLAGHGETVFPAGSNNNEIGHPLTALRIAPS-------------TRH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++         G   N+G  H+    +++    A      E L  E 
Sbjct: 157 LVMEMGARHKGDIEYLTGITPPTVGLVLNIGTAHLGEFGSREGIAEA-KGEMVEALSPEG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD   + +  R                     ++ A   + Q T+S        
Sbjct: 216 VAVLNADDPLVRAMSSRTRARVVLFGESPDAHVRATDVRLDATG-RPQFTLSTPAGSAPV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361
              L GE  V NAL AA + + +G+    V E L +       R E V        +   
Sbjct: 275 RLRLYGEHHVSNALAAAAVAVELGMPVDRVAEALSEAGALSRWRMEVVDRADGLTVVNDA 334

Query: 362 YAHTSNSLEMILKNIRTI-----TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
           Y     S+   L+ + T+        R   V G     G+    +   +G++A+ L DI 
Sbjct: 335 YNANPESMRAALRALATMAGTGPERRRTWAVLGEMRELGEDSLDEHDTIGRLAVRL-DIT 393

Query: 414 IVTDDNPRSEDPEKI--RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +     R     ++  R E   G    +   +   AI      +   DV++V
Sbjct: 394 KLVAVGGREAARMELGARNEGSWGEESVL-VSDADAAIELLRSQVRPGDVVLV 445


>gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
 gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
          Length = 485

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 158/483 (32%), Gaps = 51/483 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L DL+       I           +  I  V++DSR +  G ++VA  G   DGH FI  
Sbjct: 6   LTDLLE------ITGGKATATVAADTVITSVATDSREVLPGALYVAKPGEFSDGHTFIDG 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENIL 118
           A A GA   +       ++         P ++V++    +   A+ +       +   ++
Sbjct: 60  ARAAGAVLSLAERITHDEERREH-----PAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVV 114

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK++    +  I  ++  +   IG      +      LT  S            
Sbjct: 115 GITGSAGKTTTKDLLAGILSQAAPTVSPIGS----YNGEVGVPLTVFSATE--------- 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + + A+  G   +  D +    G    +G  H       +    AK  L E  L
Sbjct: 162 ETKYFVIEMGATGIGHLNYLTDMVHPHVGVVLCVGTAHAGEFGGVENIEKAKGELVEA-L 220

Query: 239 PKESPAIIYADDAYSKEV----MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             E  AI+ A+D     +      +    G   +     G +     V A    +     
Sbjct: 221 DTEGIAILNAEDPRVARMESRARSQVRFFGTGAVKPENAGVWASDVVVNAEGQPELTLEF 280

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE-KLHVVPGRFEFVGTNS 353
             G        L G   V N L AA   +A+ ID  L+   LE +      R E +    
Sbjct: 281 PNGYSKRITSGLLGRHHVSNILAAANAALALDIDPELIAAGLEGRAAGSRWRMERLERAD 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG-------RIIVVFGCG---GDRDQGKRPIMG 403
               I   Y     S+   L  +  +  G       R   V G     GD    +  ++G
Sbjct: 341 GVSIINDAYNANPESMRAALVTLAELGLGADGAPGRRTWAVLGEMLELGDESIHQHDLLG 400

Query: 404 KIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQD 460
           ++A+ +     +V     R   P    + ++ G          +  EA     E L   D
Sbjct: 401 RMAVRMNIKKLVVVG---RGAKPAY-NSAVLEGSWGDEAYYVEDVEEARALLEEQLQPGD 456

Query: 461 VLV 463
           + +
Sbjct: 457 IAL 459


>gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
 gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
          Length = 489

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 82/498 (16%), Positives = 161/498 (32%), Gaps = 58/498 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+              I+  + DSR I  G +FVAI G + DGH F+
Sbjct: 4   MSLTEIAQAVDGRLMPTTVPTDEP---VAISAFT-DSRQIVPGSVFVAIAGERVDGHDFV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115
           P+  AQGA A +V    +         +  P +VV+NT K L   A     +      P 
Sbjct: 60  PKVGAQGAVAALVDHEIA--------GAQVPQIVVENTVKALGALAKHNIERRRALESPF 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    ++ +  + G +   +G          +N +  P       +L 
Sbjct: 112 TVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVGS--------FNNEIGLP-----LTSLK 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +      V + A+  G   +    +         +G  H+    + +    A      
Sbjct: 159 VNAGTRFLVVEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQA-KSEIV 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTIS 294
             L      I+ A+D +   +   A            +   +    +     +    +  
Sbjct: 218 RGLVPGGLTILNANDEHVAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFV 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRF---E 347
           +E K         G    +N + A               A+     +   + P R     
Sbjct: 278 LEDKTGRHANVTLGICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVST 337

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKR 399
                +    I   +    +S++  L  +    +G       I V G     G  +    
Sbjct: 338 VTKPETSFTLIDDSFNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLH 397

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-------KGNRIEAIRTA 452
             +G+ A++    A+VT  +   E  + +   +  G               +  +A R  
Sbjct: 398 EDVGRYAVEGGADALVTVGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMV 457

Query: 453 IEML--NKQDVLVVAGKG 468
             +   ++  V+++  KG
Sbjct: 458 TRLATDHEGTVVLL--KG 473


>gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
 gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
          Length = 434

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 144/416 (34%), Gaps = 40/416 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R I  G IF A+ G+K DG+ +  +A+ +GA   VV           T+ +    
Sbjct: 18  VSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGAAYAVVDDP--------TVANGDRF 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+ ++    L   A          ++A+TG++GK++    + ++      +    G  + 
Sbjct: 70  LLFEDGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVLSMKFNTYATRGNLN- 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +       + +  P     A+  + +     +++ +S                G  TN+
Sbjct: 129 -NHIGVPLTVLSIDPAKHEMAVIEMGANHQQEIALLSSIAQ----------PTHGLITNI 177

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++           K  LF+ L  K+    + +      +++ +    G  V     
Sbjct: 178 GKAHLEGFGGVSGIIKGKGELFDYLSKKKGTVFVNSTQDVIMDMVSKRRAFGEIVFYCSE 237

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    +     ++   +            LPG +   N   A  +    G++ A  
Sbjct: 238 NSP------INPTLIEENPNVVFSNGGKTVTTHLPGRYNFDNICAALAVGKHFGVEDADA 291

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG- 391
            E +        R + V        I   Y    +S+   + N   + + R I++ G   
Sbjct: 292 YEAVATYEPDNNRSQIVKKG-TNTVIMDAYNANPSSMAAAVANFGRMEAARKILILGDMF 350

Query: 392 --GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
             GD    +   +GK IA +  D+ I+           K+    +  +P      +
Sbjct: 351 ELGDAAPEEHLALGKQIAGEKFDVVIL---------AGKLMQHALPALPKAYYFPD 397


>gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 462

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 129/388 (33%), Gaps = 25/388 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +    +I  L    ++  + +  I  V  DSR +  G +++ I G   +GH ++ QA
Sbjct: 4   MIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQA 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA A++           A       +++VD+T   L   A     +    ++ VTG+
Sbjct: 64  IDNGARAVLWER------REANPPKEIVVILVDDTTAALQQLAKAYRDQLNMKVVGVTGS 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    +  +  +  ++   +G                  P+ L    S   +    
Sbjct: 118 NGKTSTKDILASVLAKHFITQKTLGN----------YNNEIGVPLTLL---SLSENCEAA 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +   +          ++      +N+G  H++   T +    AKM + E L      
Sbjct: 165 VVEMGMENLQELSFLTQIVRPDIAIISNVGTAHLENLGTMENIARAKMEITEGLGEHGLL 224

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                        +++      ++ + G   +   +             +    KD  + 
Sbjct: 225 IYNGDQQLLRNAAIEKQIPGCIKIRTFGKDEQNDVVVHQVRQLPDG---LCFSIKDQVYH 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G+ Q  NA  A     A+G+D   + +    +     R E V  N     +   Y 
Sbjct: 282 LDMIGKHQAMNATAAWIAARALGLDEEEIAQGFASVEKTGLRNELVRVNQC-LILNDSYK 340

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG 391
               S    +  +        + V G  
Sbjct: 341 SNPQSALAAVDTMEEFDIPYKLAVLGDM 368


>gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 489

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 160/498 (32%), Gaps = 58/498 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+              I+  + DSR I  G +FVAI G + DGH F+
Sbjct: 4   MSLTEIAQAVDGRLMPTTVPTDEP---VAISAFT-DSRQIVPGSVFVAIAGERVDGHDFV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115
           P+  AQGA A +V    +         +  P +VV+NT K L   A     +      P 
Sbjct: 60  PKVGAQGAVAALVDHEIA--------GAQVPQIVVENTVKALGALAKHNIERRRALESPF 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    ++ +  + G +   +G          +N +  P       +L 
Sbjct: 112 TVIGITGSVGKTTTKDLLKSLLSKMGDTVAPVGS--------FNNEIGLP-----LTSLK 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +        + A+  G   +    +         +G  H+    + +    A      
Sbjct: 159 VNAGTRFLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQA-KSEIV 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTIS 294
             L      I+ A+D +   +   A            +   +    +     +    +  
Sbjct: 218 RGLVPGGLTILNANDEHVAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFV 277

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRF---E 347
           +E K         G    +N + A               A+     +   + P R     
Sbjct: 278 LEDKTGRHANVTLGICGQHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVST 337

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKR 399
                +    I   +    +S++  L  +    +G       I V G     G  +    
Sbjct: 338 VTKPETSFTLIDDSFNANPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLH 397

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-------KGNRIEAIRTA 452
             +G+ A++    A+VT  +   E  + +   +  G               +  +A R  
Sbjct: 398 EDVGRYAVEGGADALVTVGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMV 457

Query: 453 IEML--NKQDVLVVAGKG 468
             +   ++  V+++  KG
Sbjct: 458 TRLATDHEGTVVLL--KG 473


>gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 459

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 128/367 (34%), Gaps = 27/367 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIR 87
            + VS DSR +    +F+ + G   DGH F+ +A+ +GA A ++     ++ +  +   R
Sbjct: 26  FDGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQKGAVATLIDQRYPHAGEYVAWCTR 85

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                + V +T + L   AS    K P    + +TG+SGK++V    + +          
Sbjct: 86  FGAACIAVHDTLRALQDLASFYCKKFPALIRIGITGSSGKTTVKEMARAVFSERYRVVAT 145

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  ++         +  P  +         +   V    +  +  G  +     +    
Sbjct: 146 PGNLNS--------EIGLPQSL-----FFVRAEHEVGIFELGMNRRGEMRTLAQILVPHY 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  H+    TQQA    K  +F +        + +  D   +  +         
Sbjct: 193 AIITNVGCAHVGILGTQQAIAEEKKEIFSQFTEHS---VGFVPDDAYRVFLSNIPYGRVV 249

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V   G +G    +       ++         +      PLPG     NAL    L   +G
Sbjct: 250 VYDQGGRGLATEVIDEGLRGSRVL------YQGRWIRVPLPGVHNAKNALAVIALAAQVG 303

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +  +   +E++    GR   V  +         Y    +S+   L     I++   + 
Sbjct: 304 LPAEEIQRGMERVKPPFGRSHVVCASLTFLLDC--YNANPDSMAAALHLCAHISAVSKVY 361

Query: 387 VFGCGGD 393
           V G  G+
Sbjct: 362 VLGDMGE 368


>gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 456

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 143/402 (35%), Gaps = 31/402 (7%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   ++   L+I    + E  +  VS D+R I  G +F+   G   +GH F+ QA  +G
Sbjct: 2   KKSLQQIAEWLTIENQSFPETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +               ++ P++ V++    L   A     +H    + +TG++GK+
Sbjct: 62  AAASLW------MIDEPNPPAHLPLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +             IG  +               PI + +         V+ + +
Sbjct: 116 SSKDILAGALSPYFKVQKTIGNFNNQ----------LGLPITILQ---LDEDTEVSVLEM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +   +  +      TN+G  H+    +++    AK     + L +E      
Sbjct: 163 GMSGFGEIEFLTNLARPHYAIITNIGEAHMQDLGSREGIAKAKF-EIVKGLSEEGILFYD 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+   + ++ +  +   +  + G+  +            +            DF   + 
Sbjct: 222 GDEPLLQNLVAKTPH--LKTQAFGFSQELNLAASQIKATAQGSSFHVEGLIQGDFFISVL 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE QV N L A  +  ++G+    + E L+K+ +   R + V     G  ++++ A+ + 
Sbjct: 280 GEHQVKNTLSAMLVSKSLGLTDEQIREALKKVVLTDMRMQLVP---VGDLLFINDAYNAA 336

Query: 368 SL---EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG 403
                  I    +T       +V G     G+ ++     + 
Sbjct: 337 PTSMHAAIQFVEQTTIRNEKWLVLGDMLELGNEEKKMHEGIA 378


>gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
 gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
          Length = 433

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 61/438 (13%), Positives = 143/438 (32%), Gaps = 35/438 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF+A+ G   +G+ F   A+ +G    ++      ++       N  +
Sbjct: 16  ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEG------NDRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +        A     +    ++ +TGT+GK++    +  +           G  + 
Sbjct: 70  ILVKDALVAFKKIARLHRREFHIPVIGITGTNGKTTSKELISAVLSEKYNVLHTEGNFNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +               L       +  + + AS  G  +  ++ ++   G  TN+
Sbjct: 130 DVGVPK-------------TLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++   + +     K  L++ L   +    +   +    E+  + +           
Sbjct: 177 GRAHLEGFGSFEGVKLTKGELYDYLKANDCLLFLNESNPDLSEMAAQRNFERIISYGQND 236

Query: 273 Q-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                  +       + +   +  E K+        G + + N L A  L +   +    
Sbjct: 237 MVNVQGEIIDCAPFLHFRWREVGSEWKEVMTHL--VGAYNLDNMLAAIALGLHFSVAPQQ 294

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   LE       R +          +   Y    +S+   ++N R +     + + G  
Sbjct: 295 ICHALETYVPSNNRSQLT-ETVHNKLVVDAYNANPSSMVAAIENFRLMNVENKMAILGDM 353

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
            +  +       K+   L   A +T+     E+  K   +       F +  +  E ++ 
Sbjct: 354 RELGEVTDVEHQKVVEQL-KAAGLTNVWLVGENFGKTNTD-------FKKFHDVEE-VKA 404

Query: 452 AIEMLNK-QDVLVVAGKG 468
            I         +++  KG
Sbjct: 405 EIAKAQPQGHYILI--KG 420


>gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum Nigg]
          Length = 450

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 171/467 (36%), Gaps = 40/467 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++ K++  L+  + I       +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA  
Sbjct: 4   ILLKEWSSLLLDIDIPCSG---KKVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQ 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A VV+S Y   D+         +L V + R+ L              ++ +TG+ G
Sbjct: 61  SGAVAAVVASDYRGPDY------GLQLLHVADPREALRAAGRTQGALFHGEVIGITGSVG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  SF QQ+                 S  + +++LT P  I  A             +
Sbjct: 115 KTTTKSFTQQLLSPFYKV--------FASPKSYNSQLTLPLSILTADGDEDFL-----VL 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  S     +  LD I+   G  T++   H      + A   A+ +     L +    +
Sbjct: 162 EMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVDKGAQGIAEEKSLL--LERCGIHL 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D ++    MK+   A     S+  +    + + +    + + V IS    D +    
Sbjct: 220 LPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI----HSEGVLISAPDGDIELPVV 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            P      N ++A  L     +    + +  + L +   RFE    N     I   Y  +
Sbjct: 276 FPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSMRFEQQEHNGI-RIINDAYNAS 334

Query: 366 SNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            +++   L  +      G+ + + G     G         + + A+  A +         
Sbjct: 335 PDAMLAALDAVPIPSEGGKTVFILGHMAELGRYSDECHIAVARKAVTKAHVVFFV----- 389

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E    +R  +          G+  E +     ++ + DV+++  KG
Sbjct: 390 GEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRGDVVLL--KG 434


>gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
 gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
          Length = 457

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 169/474 (35%), Gaps = 39/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENFGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     ++ ++L +   +   G+ I V G   +       +  ++A  LA  AI  ++ 
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAI--EEV 389

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
                     A+ +          +       E I    ++L  +D++V+  KG
Sbjct: 390 FLYGSEMAYLADKLQETYAPTNIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441


>gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 460

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 141/398 (35%), Gaps = 25/398 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  +     Q   + +  +++D+R +  G +F+A+ G   DGH FI +A  +GA  ++
Sbjct: 7   DWLANVLTTDYQGDNQHVLNINTDTRTVCGGEVFLALKGPNFDGHKFIAEAKQKGAIGVI 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V     +         + P  +V +TR  L    + +  +     +A+TG+ GK++V   
Sbjct: 67  VQHKVDV---------DIPQFIVSDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I    G      G  +               P+ L              + + A+  
Sbjct: 118 CAAILSVHGDVLATKGNFN----------NDIGVPLTLL---RLEPQHRFAVIELGANHL 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +     K       N+   H++   +      A      + L  +  AI+  D  +
Sbjct: 165 GEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKA-KGEIFDGLKDDGVAIVNCDSEF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S+  + +      +  S   +            + +   T+  + K       LPG+  +
Sbjct: 224 SQYWLDKLEGRNVKCFSTTEKLDIWAENITLDANARASFTLCTKNKQVPVTLALPGKHNI 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL+AA L     +    +   L  +  V GR   +  +     +   Y     S++  
Sbjct: 284 SNALIAAALTSEFDVTLEEIANALATMGDVKGRVNLIEVSDLLTVVDDTYNANVKSVKAA 343

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
           +  +  +   RI+ +   G  G+  +     +G+ AL+
Sbjct: 344 IDLLSDMQGHRILALGDMGELGEDARKYHQEVGEYALE 381


>gi|159477677|ref|XP_001696935.1| hypothetical protein CHLREDRAFT_192674 [Chlamydomonas reinhardtii]
 gi|158274847|gb|EDP00627.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 513

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 99/258 (38%), Gaps = 42/258 (16%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            + + +   + ++ +   G     +  L G   V N L A    +A+       +    +
Sbjct: 211 AESIKSNIWETELIVRTPGGRLQIITNLLGRHNVANVLAAVATGVALKAPL-ASIVAGIE 269

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +PGR E +    +   + VD A T  +L  +L  +R   + +I  VFGC G+ D   
Sbjct: 270 AVEIPGRSEVI-DEGQEFSVVVDAARTPEALGDMLDALRAGGARQIFTVFGCSGNEDASI 328

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--------------------- 437
           RP MG +A   +D  I+T++NPR EDP K+ A+I+ G P                     
Sbjct: 329 RPRMGAVAHAKSDYVIITNENPRLEDPAKVVADIVAGFPDDMVNRYSAYAYFPFQDQGRT 388

Query: 438 ---------------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE--- 479
                                +R  AIR AI     +DV+++AGKG E      + +   
Sbjct: 389 PLWFEPYLQKAQRDNKRYVMEDRYSAIRAAIGTAGPEDVVLLAGKGSEDWVEHADEDGSV 448

Query: 480 -KKMSVDCDIIREILGLI 496
                 D    R  L  +
Sbjct: 449 LTGWLDDRVEARNALSKL 466


>gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter cryohalolentis K5]
 gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter cryohalolentis K5]
          Length = 482

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 138/381 (36%), Gaps = 27/381 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +++D+R I+ G IF+A+ G+  DGH ++  AIAQGA A +V+   +  D      ++ 
Sbjct: 49  TRIATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGAVAAIVARPIATAD-----ANSI 103

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P LVV +TR  L   A+    +H    ++A+TG+SGK++    +  I  R   +    G 
Sbjct: 104 PQLVVSDTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGN 163

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                + L+             + + A+  G   +  + ++      
Sbjct: 164 LNNDLGVPMML-------LELSDHHR------YAILELGANHIGEIAYTTEIVQPDVACI 210

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+    +++     K       L     AI+   D ++ ++ + A      V+ 
Sbjct: 211 LNIGTAHLGEFGSREGICQTKA-EIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIG 269

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G          V      ++    +   +      LP   +       A    A  ++ 
Sbjct: 270 FGSTDVSASHLDVE----PERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNI 325

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV- 387
            +    +   +  P +           R+  D Y    +S+    K +   T  +++V+ 
Sbjct: 326 EVSDIVVGLENARPAKGRLNSQLLGMHRLIDDTYNANPHSVRAAAKVLAAQTGTQVMVLG 385

Query: 388 -FGCGGDRDQGKRPIMGKIAL 407
                G+    +   +G+   
Sbjct: 386 DIAELGEAAVSEHQSLGRTIA 406


>gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa
           DSM 4126]
 gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa
           DSM 4126]
          Length = 436

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 142/383 (37%), Gaps = 34/383 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + +DSR ++ G +F A+ G   +G+ F  +A+ +GA A+V+      QD   T     
Sbjct: 15  SGICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNT----- 69

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V++  + L L A+    K    IL +TG++GK++    +  +           G  
Sbjct: 70  --ILVEDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +N +  P  +     LS      +  + + A+  G         +   G  T
Sbjct: 128 --------NNHIGVPLSL-----LSIQKDHEIAIIEMGANHVGEIASYCQMAQPTHGLIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ HI      +     K  LF+ L   +    I   DA  K + KR           
Sbjct: 175 NIGKAHIGEFGGFENIIIGKSELFDFLKKNDGVPFINTQDAVLKNMEKR---------FS 225

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-NALVAAGLCIAIGIDS 329
                      +     K    +    + F  +         Y N   A  +     +  
Sbjct: 226 NAITFPNEGDDLQLKPEKGTAFLRYSTEGFSHIDTHLVGQFNYLNVAAALCIGKYFEVTM 285

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              +E  ++      R + + T++    +   Y    +S+E+ +K++  I +   +V+ G
Sbjct: 286 EKAIEATQEYMPENMRSQMIKTDNY-TILLDAYNANPDSMELAMKSLSAIENTESVVILG 344

Query: 390 CG---GDRDQGKRPIMGKIALDL 409
                GD  + +   +G++A+DL
Sbjct: 345 DMLELGDTAELEHEKLGELAVDL 367


>gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
          Length = 454

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 162/428 (37%), Gaps = 35/428 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I +++   +   +  I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V 
Sbjct: 9   IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         N P +VV +T+  L   AS ++       +A+TG+ GK++V   V 
Sbjct: 69  KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +               P+ L              + + A+  G 
Sbjct: 120 SILQQKGNVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAY 252
             +    +K +     N+   H++   + +    AK  +++ L       +      DA 
Sbjct: 167 IAYTTQLVKPVIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDAL 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V+           +        ++           + IS + ++ +    + G+  V
Sbjct: 227 WQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A+ + + +G     +   L  L+ V GR +    +S    I   Y  +  +++  
Sbjct: 287 ANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAA 346

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428
           +  +      R +++      G+        +G+ A       ++T   D        KI
Sbjct: 347 VDLLGAFHGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD-------AKI 399

Query: 429 RAEIIHGI 436
            +E+ HGI
Sbjct: 400 ISELCHGI 407


>gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
          Length = 465

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 91/461 (19%), Positives = 166/461 (36%), Gaps = 50/461 (10%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR  QAG ++VA  G   DGH F+  A  +GA A++V          
Sbjct: 18  GNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEVDEA--- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139
                  P +VV+++ + L   A     K       +++A+TG+ GK++    + QI   
Sbjct: 75  ------VPQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSE 128

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +             + +N +  P  + LA       +     + + AS  G   +  
Sbjct: 129 DGPTV--------APKLSFNNEVGLPLTVLLA-----DETTRHLVLEMGASGPGHITYLT 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +         +G  H+      +    AK  L +       P I+  DD   + +   
Sbjct: 176 DIVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKG-TRPGGPVILNTDDPNVEAMAPL 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A     R  + G +   +  + V     ++   T+     +      + G   V NAL A
Sbjct: 235 ATGRVIRFSASGNERADVVARDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILK 374
           A   + +G+    V   L +     P R +       G     I   Y    +S+   + 
Sbjct: 295 AAGALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIA 354

Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + +I    + I V G   +  +  + +  ++   +AD  + T           + A+  
Sbjct: 355 ALASIGRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDT--------LIGLGADAH 406

Query: 434 HGIPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKG 468
           + + G  E  NR       +A R A+E      V++V  KG
Sbjct: 407 YYLEGAPEVPNREVAADPQDAARLALEHAEDGAVVLV--KG 445


>gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
 gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
          Length = 483

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 97/480 (20%), Positives = 156/480 (32%), Gaps = 49/480 (10%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q    P  W   +I  V +DSR +  G +FVA+ G + DGH F+   + +GA A +VS
Sbjct: 2   IRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAALVS 61

Query: 75  SA---------------------YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
                                     Q  +        ++ VD+    L   A       
Sbjct: 62  PEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQMF 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG+ GK+S    V  +C R   +          S  + ++ +T P+ +     
Sbjct: 122 TPTVIGITGSVGKTSTKEVVAAVCSRRLRT--------LKSQRSFNSEVTLPATL----- 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                +       +E       + R      +   G  TN+G  H++   + +A  NAK 
Sbjct: 169 --LGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA 226

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L E L       +    D +    M     A               L  V       ++
Sbjct: 227 ELPESLPADGWCIL--NADDHRVAAMASRTAARVLTYGYAPNADVRLLDVVSHGLYGIEL 284

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+  EG+      PL G    Y AL A    + +G+D   + E L +      R   V  
Sbjct: 285 TVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE-PGEQLRLRIVPG 343

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
                 I   Y     S    L+ +   T GR I V G     G         +G  A  
Sbjct: 344 QHGTTIIDDTYNAAPLSTIAALQVLAE-TKGRRIAVLGEMLELGAASVEGHQQVGAAAAT 402

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +AD+ +       +       A +       +   N   AI      +   D L++  KG
Sbjct: 403 MADVLVAVGRQAHTMAEAARSAGMPA--EQILVCDNNEAAINLLNRYIQPGDHLLI--KG 458


>gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402]
          Length = 303

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 100/246 (40%), Gaps = 24/246 (9%)

Query: 9   KDFPELINQLSIFPMQWRERK-INEVSSDSRHI-----------QAGWIFVAIVGNKEDG 56
           K   E I  + +      ++  IN V  DSR +           + G  F A+ G   DG
Sbjct: 26  KSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGIHTDG 85

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             FI  AI  GA  I      +              + V++ RK +S  ++ LY +    
Sbjct: 86  KKFINSAIENGAVCIFYEGDLNNHSC-----DEICFVQVNDVRKTMSKVSALLYDEPSRT 140

Query: 117 --ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLA 171
             ++ VTGT GKSS  SF+ Q+    G  +            +        TTP    + 
Sbjct: 141 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNIVQ 200

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             L+ +   G  +  VEASSHGL     RL+ +   AG F N+ ++H+++H T + Y   
Sbjct: 201 LRLAQMRDSGCGYAVVEASSHGLSPRTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 260

Query: 230 KMRLFE 235
           K  LF 
Sbjct: 261 KANLFR 266


>gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 528

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 154/473 (32%), Gaps = 37/473 (7%)

Query: 14  LINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L         +     +   V  DSR   AG +FVA  G   DGH F+  A+ +GA A++
Sbjct: 18  LSGPPGATQEELAALAVTGPVVFDSRDAAAGALFVAFPGEAADGHDFVQAAVDKGAVAVL 77

Query: 73  VSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSV 129
            +   + +    T R + P + V   +  + LS  A+    + P    + +TG++GK++ 
Sbjct: 78  AAPDDAYRK-PWTARGSVPTVTVGDGDLLRALSALATAHLARLPRTTVIGLTGSAGKTTT 136

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              + ++ +  G +    G  +    F      T                       + A
Sbjct: 137 KDLIGRLTRELGPTVAPKGSFNNELGFPITVLRTDED-------------TRYLVAEMGA 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-------RLFEELLPKES 242
              G  +H         G   N+G  H+    + +A   AK                ++ 
Sbjct: 184 RGIGHIKHLTTIAPPRIGVVLNVGSAHLGEFGSVEAIAEAKGELAAAVPESGNCNPDRDG 243

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---D 299
            AI+ ADDA  + +  R                     +V +        +  +G+    
Sbjct: 244 VAILNADDARVRGMAARTKGRVVLFGESPDADVRAEDVRVGSDGRASFTLLYRDGEGPHR 303

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRI 358
           +     L GE QV NAL AA   + +G+    V E L         R     +      +
Sbjct: 304 YPVALRLVGEHQVSNALAAAATGLELGLAGEKVAEVLSAAEPDSKWRMAIGESADGVTVL 363

Query: 359 YVDYAHTSNSLEMILKNI----RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD 411
              Y     S+   LK +    R     R   V G     GD    +   +G++A+ L +
Sbjct: 364 NDAYNANPESMRAALKTLATMARARPGARSWAVLGTMAELGDDSAVEHDAVGRLAVRL-N 422

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           IA        +       +         +   +   A+          DV++V
Sbjct: 423 IAQTVAVGAGAAAIHSGASMEGSYNGESVAVPDADAALAFVRAGARPGDVVLV 475


>gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
 gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
          Length = 462

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 143/396 (36%), Gaps = 25/396 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  +     Q   RK+  +++D+R +  G +F+A+ G   DGH FI QA  +GA  ++
Sbjct: 7   DWLANVLATDYQGDNRKVININTDTRTLCDGEVFLALKGPNFDGHKFIEQAKQKGAIGVI 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V  A           ++    VV +TR  L    + +  +     +A+TG+ GK++V   
Sbjct: 67  VDHAVD---------TDIAQFVVADTRIALGTIGTAVMAQVAPKTIAITGSVGKTTVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I    G      G  +               P+ L              + + A+  
Sbjct: 118 CAAILSSKGDVLATKGNFN----------NDIGVPLTLL---RLEPQHRFAVIELGANHI 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +     K       N+   H++   + Q    AK  +++  L ++  AI+  D  +
Sbjct: 165 GEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLQGVAQAKGEIYDG-LKEDGIAIVNCDSDF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S+  + +      +  S   +              +   T+  +         LPG+  +
Sbjct: 224 SQYWLDKLATRNIKCFSSSEKLDIWAEDISLDAQARASFTLCTKQHSVPVKLALPGKHNI 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL+AA L     +    +   L  +  V GR   +  +     I   Y     S++  
Sbjct: 284 SNALIAAALTSEFDVSLEDIASALATMGEVKGRVNLIEASDSLTIIDDTYNANVKSVKAA 343

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
           +  +  I   RI+ +   G  G+  +     +G+ A
Sbjct: 344 IDLLSDIQGHRILALGDMGELGEDARKYHQEVGEYA 379


>gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 455

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 165/474 (34%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++      E          Q+ +  I  VS DSR ++ G +FV ++    DGH F+
Sbjct: 3   MQLSEVARALGIE-------SEDQYDQITITSVSFDSRSLEQGALFVPLI-ASNDGHEFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A +    +  +          P+L+VD+T + L         K    ++A+
Sbjct: 55  EAAKQNGACAALWQKDHENR------PQGIPLLIVDDTLEALQKIGKYYLQKINPKVVAI 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +       +      +             P             + 
Sbjct: 109 TGSNGKTTTKDMIAAVLSTQFNVAKTHDNFNNHIGVPMTVLSMEP-------------NT 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  V +     G   H +  +       T +G  HI++ +T+    +AKM +   L   
Sbjct: 156 EILVVEIGMDHFGELDHLVHLLDPDVAVITMIGEAHIEFFKTRDRIADAKMEITHALKED 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                          +++RA        + G         +      ++      +  + 
Sbjct: 216 GLLVYNG----DEPLLIERAEKLDFETKTFGTGANVDLQAQNIVSDAEKTSFRVKQWPEL 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ G + V NAL A  +     ID   +++ LE   +   R E+V  ++    +  
Sbjct: 272 NFTIPMIGAYNVKNALAALCVGSEFQIDPRSMVKALEHFDLTRNRTEWVKASNGADILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIV 415
            Y     +   +L   +   T+GR   V G     G++       +  KI     D   +
Sbjct: 332 VYNSNPTACAEVLTAFQNAETTGRRYAVLGDMLELGEQGPKMHAGLADKIDPKKVDEVFL 391

Query: 416 TDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               P  ++  +   +    G       G + + +    E L  +D++++  KG
Sbjct: 392 C--GPLMKNLAEALTDKFDQGKIHHYATGEKEQLVSDLKERLRSEDMVML--KG 441


>gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           CECT 5716]
          Length = 459

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 167/476 (35%), Gaps = 46/476 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +       +W + ++  V+ DSR+++AG +FV + G + DGH 
Sbjct: 1   MKMS------LAEIAQAIQAHNQVDKWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA+A + +      D         P LVVD+  K L         K    ++
Sbjct: 54  YVAKAFENGAKATLWAK-----DHPYDPADGYPRLVVDDPLKALQQLGKYYLNKINPVVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    V  I              +               P+ L    +   
Sbjct: 109 AVTGSNGKTTTKDMVASILATQMNVIKTYANFN----------NEIGVPVTLLNMEANTE 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  V           L   RL          T +G  HI++  ++    +AKM +   L 
Sbjct: 159 AVVVEMGMDRFGQLDL-LSRL--TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLA 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +       D     + +RA     +  + G Q                      +  
Sbjct: 216 EDGTFVY----DGDEPLLRERAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVNQWP 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  F  PL GE+ V NAL A  +   + +  A + + L+ + +   R E+V   +    +
Sbjct: 272 DEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVAGANGERIL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIA 413
              Y     +++ +L  + TI   G+ + V G   +  +    +       I     D  
Sbjct: 332 SDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEV 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEM-LNKQDVLVV 464
            +       E      A +  G P     + +   R  A+  A++  L   DV+++
Sbjct: 392 YLI----GGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442


>gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 505

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 95/501 (18%), Positives = 161/501 (32%), Gaps = 59/501 (11%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     ++  +    + P    E  +   V  DSR I  G +FVA+ G   DGH F   
Sbjct: 1   MIEITLADIARVTGGQLSPGADPEATVTGYVEFDSRKITEGGLFVALPGANVDGHDFAQS 60

Query: 63  AIAQGAEAIVVSSAYSLQ---------------DFSATIRSNTPILVVDNTRKFLSLFAS 107
           AI +GA   +V+    +                D +A     +   VV    K  +  A+
Sbjct: 61  AIDRGAVGALVARDVGVPAVILPPVEQIEGDNSDLAANDPDGSARAVVAGMAKLAAHVAT 120

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            L  KH   I  +TG++GK+S    +  +   +G +    G  +            T   
Sbjct: 121 TLVDKHQLRITGITGSAGKTSTKDLIASVLADAGETVAPPGSFNNEIGLPYTVLRCTEDT 180

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            +L                + A   G             G   N+G  H+    +++   
Sbjct: 181 DFL-------------VAEMSARGIGHIAQLTHVAPPQIGVVLNVGSAHLGEFGSRENIA 227

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  L E  LP +  AI+ ADD     +  R         +          + +     
Sbjct: 228 QAKGELVEA-LPADGIAILNADDELVAGMASRTKARVVCFSTDPRSNAEYVAEGITLDDV 286

Query: 288 KQ--QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP-G 344
            +      S   +       + G  QV NAL  A + +  G+D+A V   L   H +   
Sbjct: 287 ARASFTMHSPNSEPQQVRLKVFGAHQVSNALATAAVGMEAGMDAATVARALSNAHSLSVN 346

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCGGDRDQGKRP 400
           R +          I   Y    +S+   +  +    +GR     I V G  G+  +    
Sbjct: 347 RMDVNTRADGVTVINDAYNANPDSMRAGIAALGYTAAGRPGVRSIAVLGEMGELGEDSVE 406

Query: 401 IMGKIALDLAD----IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               +  +LA       +V  ++  +E    +      GI       +  +A     E+L
Sbjct: 407 AHTALGNELARYRVTHLVVVGES--AETAALLSRAAERGIESV-SALDIEDATERVSEIL 463

Query: 457 ------------NKQ-DVLVV 464
                           DV++V
Sbjct: 464 RTVPLGEENWRDRPDRDVVLV 484


>gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
 gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
          Length = 444

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 142/416 (34%), Gaps = 39/416 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R I    IF A+ G K +G+LF  +A+ +GA  +VV    +LQD          I
Sbjct: 31  VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVVDEPQNLQDD--------RI 82

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V N  + L   A          ++ +TG++GK++    +  + Q      +  G  + 
Sbjct: 83  ILVKNGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQEKFQVHYTQGNLNN 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                    L+ P    +A     + +  +  + + +S    D   +          TN 
Sbjct: 143 H-IGVPLTLLSIPENAQIAVI--EMGANHLKEIELLSSIAQPDLGYV----------TNF 189

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++     +     K  L+  L       +I ADD    +  K   +      +   
Sbjct: 190 GHAHLEGFGGFEGVVKGKSELYNFLHEHHKTVLINADDPLQLQQAKAVESQISFSKNEST 249

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           Q  +    K           I V  +D      L G +   N   A       G+    +
Sbjct: 250 QATYCIELKENV-----NNKIQVVVEDVVIRSNLTGNYNWSNVAAAISFGKHFGLSPKEI 304

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG- 391
              +E  +    R + +  +     +   Y    +S+E  L N  T    + +++     
Sbjct: 305 KNGIENYYPANHRSQLIQKDKY-TLLMDAYNANPSSMEASLNNFSTFDGSKTVILGDMFE 363

Query: 392 -GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            G+  +     + ++  DL  +   +  +N          ++I           +R
Sbjct: 364 LGESSKVNHQKIAQLTKDLGFEKIYLVGNN---------FSKIEGDFSDIQFFEDR 410


>gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Enterococcus sp. 7L76]
          Length = 457

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 169/474 (35%), Gaps = 39/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     ++ ++L +   +   G+ I V G   +       +  ++A  LA  AI  ++ 
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAI--EEV 389

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRI-----EAIRTAIEMLNKQDVLVVAGKG 468
                     A+ +          +       E I    ++L  +D++V+  KG
Sbjct: 390 FLYGSEMAYLADKLQETYAPTNIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441


>gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
 gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
          Length = 456

 Score =  120 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 160/474 (33%), Gaps = 46/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  K+       +     +   ++++ V  DSR ++   +F+AI G + DGH+FI
Sbjct: 1   MK--NMTLKEIAVACGGIYYGDDESYYKEVSSVVIDSRKVEKDCLFIAIRGARVDGHMFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ I  GA   +               ++ P ++V +  + L   A          ++ V
Sbjct: 59  PQTIRDGALCALSEKRIE--------NASYPYILVTSCEQALKDIAEHYRKSLNLKVVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +           G  +               P+ +          
Sbjct: 111 TGSVGKTSTKEMIASVLGEKYNVLKTAGNFN----------NEIGLPLTIFNIREE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  S+ G +  RL  I +      TN+G  H+++ +++     AK  +F  + P
Sbjct: 158 EVAVLELGISNFG-EMERLAKIARPDICVITNIGVAHLEHLKSRDGILKAKTEIFLYMNP 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S  +   DD  S              L          ++                   
Sbjct: 217 NGSIILNGDDDKLSTVHPANGIQPVFFGLDDSRDFYADQVESCGLRG--TNAVFHTPNST 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F     +PGE  V NAL       A+G++   +   +E L  + GR   + T+S      
Sbjct: 275 FSAHISIPGEHMVLNALAGIAAGYALGMNDEEIKAGIEALVPLAGRNNLIETDSLTIIDD 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             Y     S +  L  +    + R I V G     G  ++     +GK A  L    +V 
Sbjct: 335 C-YNANPASTKASLDVLAKADT-RQIAVLGDMFELGPTEKQMHYEVGKYAAGLGIDILVC 392

Query: 417 DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     ++   +  G               + +    A  +LN +D ++V
Sbjct: 393 --------IGQLSEHMATGASEQCSKTQVFYFETKDDFFEQADRILNPKDTVLV 438


>gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 460

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 139/398 (34%), Gaps = 25/398 (6%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  +     Q   + +  +++D+R I +G +F+A+ G   DGH FI QA   GA  ++
Sbjct: 7   DWLANVLATDYQGDNQPVLNINTDTRSICSGEVFLALKGPNFDGHKFIAQAKQNGAIGVI 66

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V     +         + P  +V +TR  L +    +  +     +A+TG+ GK++V   
Sbjct: 67  VQHKVDV---------DIPQFIVADTRLALGIIGGAVMAQVAPKTIAITGSVGKTTVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I    G      G  +               P+ L              + + A+  
Sbjct: 118 CAAILSVHGDVLATKGNFN----------NDIGVPLTLL---RLEPQHRFAVIELGANHL 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +     K       N+   H++   +      A      + L  +  AI+  D  +
Sbjct: 165 GEIAYTTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKA-KGEIFDGLKDDGVAIVNCDSEF 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S+  + +         S   +            + +   T+  +         LPG+  +
Sbjct: 224 SQYWLDKLDGRKVTRFSSSEKLDIWAENISLDENARASFTLCTKNAQIPVKLALPGKHNI 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL+AA L     +    +   L  +  V GR   +  +     +   Y     S++  
Sbjct: 284 SNALIAAALTSEFDVTLEDIANALATMGDVKGRVNLINVSDLLTVVDDTYNANVKSVKAA 343

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
           +  +  +   RI+ +   G  G+  +     +G+ AL+
Sbjct: 344 IDLLSDMQGHRILALGDMGELGEEARQYHQEVGEYALE 381


>gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 459

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 167/476 (35%), Gaps = 46/476 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +       QW + ++  V+ DSR+++AG +FV + G + DGH 
Sbjct: 1   MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA+A + +      D         P LVVD+  + L         K    ++
Sbjct: 54  YVAKAFENGAKATLWAK-----DHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    V  I              +               P+ L    +   
Sbjct: 109 AVTGSNGKTTTKDMVASILATQMNVIKTYANFN----------NEIGVPVTLLNMEANTE 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  V           L   RL          T +G  HI++  ++    +AKM +   L 
Sbjct: 159 AVVVEMGMDRFGQLDL-LSRL--TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLA 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +       D     + +RA     +  + G Q                      +  
Sbjct: 216 EDGTFVY----DGDEPLLRERAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVNQWP 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  F  PL GE+ V NAL A  +   + +  A + + L+ + +   R E+V   +    +
Sbjct: 272 DEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVAGANGERIL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIA 413
              Y     +++ +L  + TI   G+ + V G   +  +    +       I     D  
Sbjct: 332 SDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEV 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEM-LNKQDVLVV 464
            +       E      A +  G P     + +   R  A+  A++  L   DV+++
Sbjct: 392 YLI----GGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442


>gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 448

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 156/454 (34%), Gaps = 53/454 (11%)

Query: 1   MKLQDLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   ++    +   +  +   S +S+ I    +F+ + G++ DGH F
Sbjct: 1   MNL------WLSEIAKAVNGELKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENIL 118
           + +A+  GA + +    +             P + V +T   L   A       +   ++
Sbjct: 55  VKEALQNGAISFISQKDFD--------DLKVPYVKVGDTLLALQSLAYFARRKLNDLKVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +      +    G  +                           
Sbjct: 107 GVTGSVGKTSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPED------------ 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  S+ G         K   G  TN+G  HI+  +++   F AK  + + + 
Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMP 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   +D  +    +         +      +  +++K        Q   S E  
Sbjct: 214 ESGILIINNDNDILNLHKKEFKRKVVTIGIENESNFRAQNVQK-------HQNGFSFEVG 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + +         +YN+L A  +   + ID  L+ E + +   +  RFE     ++G   
Sbjct: 267 GYTYFIKSFNFHDIYNSLFAIAVGTILEIDRELIKEAILQKERLKRRFEV---INKGSIT 323

Query: 359 YVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADI 412
            VD  Y  +++S+   + +I     G+ I+V G     G+  + +   +G+ I     D+
Sbjct: 324 VVDDTYNASTHSMLSAIDSICEF-DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDV 382

Query: 413 AIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGN 444
            I T      +D   I  E     G+  +    +
Sbjct: 383 VICT-----GKDAFYIFDEAKKKDGVKAYFVSKD 411


>gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 458

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 146/411 (35%), Gaps = 24/411 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V  
Sbjct: 9   IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      I+ + P ++V+NT   L   A  +  K    ILA+TG+ GK+SV     
Sbjct: 69  K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +++G +   I   +               P+ L +            + + AS  G 
Sbjct: 120 SILRKNGNTISTIDNLN----------NNIGVPMTLLQLKQEHK---YGVIELGASKPGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  +  +       N+   H+   ++      AK  +F  L P  +  I      +S+
Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQ 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                 ++          +        +    +    T+       +   P  G   + N
Sbjct: 227 WKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHSTSFTMHTPCGKINISLPFLGYQNISN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+    A+ I    +   L    +V  R E +        I   Y    +S+   +K
Sbjct: 287 ALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIK 346

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +  +   +I+V       G+       ++G  A   A   I +  +  SE
Sbjct: 347 VLERMPGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397


>gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 459

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 167/476 (35%), Gaps = 46/476 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +       QW + ++  V+ DSR+++AG +FV + G + DGH 
Sbjct: 1   MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA+A + +      D         P LVVD+  + L         K    ++
Sbjct: 54  YVAKAFENGAKATLWAK-----DHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPIVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    V  I              +               P+ L    +   
Sbjct: 109 AVTGSNGKTTTKDMVASILATQMNVIKTYANFN----------NEIGVPVTLLNMEANTE 158

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +  V           L   RL          T +G  HI++  ++    +AKM +   L 
Sbjct: 159 AVVVEMGMDRFGQLDL-LSRL--TTPDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLA 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +       D     + +RA     +  + G Q                      +  
Sbjct: 216 EDGTFVY----DGDEPLLRERAAKLSQQTKTFGRQLDDDLYATSVNPDVDHVSFTVNQWP 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  F  PL GE+ V NAL A  +   + +  A + + L+ + +   R E+V   +    +
Sbjct: 272 DEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQNVELTENRSEWVAGANGERIL 331

Query: 359 YVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIA 413
              Y     +++ +L  + TI   G+ + V G   +  +    +       I     D  
Sbjct: 332 SDVYNSNPTAVKEVLATLATIPVAGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEV 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEM-LNKQDVLVV 464
            +       E      A +  G P     + +   R  A+  A++  L   DV+++
Sbjct: 392 YLI----GGEMGALKDALLKAGYPAGQLHYYQAAQRK-ALTDALQASLTTGDVVLL 442


>gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 448

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 138/388 (35%), Gaps = 25/388 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     + I +      +        V++DSR   +G +FVA+ G++ DGH +I  A++
Sbjct: 1   MIGDWLTDDIAKAVGGAAEGDSVAFTRVTTDSRADCSGALFVALKGDRFDGHEYIDAAVS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++  +            ++   ++V ++   L    +    +    + AVTG++G
Sbjct: 61  QGAVAVMAQAKA---------NADVAQIIVPDSLAGLGRLGALNRSRFNGPVAAVTGSAG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I  + G      G  +            T                     
Sbjct: 112 KTTVKELLASILSQRGDVCKTQGNFNNHIGVPLSLLQLTEE-------------HRSAVF 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS+ G   + +   +       N    H++      +   A        LP++  A+
Sbjct: 159 ELGASAVGEIAYTVALARPQVAILNNAAAVHVEGFGDLASIVKA-KGEIVCGLPEDGVAV 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DDA     ++ A         +      +  + +    N     +S      D   P
Sbjct: 218 LNKDDANFSAWVEMAGARKVISFGLDD-SAMVRAQNIHLELNGSTFRLSAPEGGIDATLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   V NAL AA   +A+G     V + L     V GR   +   +    +   Y  +
Sbjct: 277 LPGAHNVRNALAAAAAALALGWTLEEVRDGLASAAPVKGRMNKLLGINGSVILDDTYNAS 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD 393
             S++  +  +     GR IV  G  G+
Sbjct: 337 PTSMKAAIDVLARY-PGRRIVALGHMGE 363


>gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 465

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 142/421 (33%), Gaps = 36/421 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      D    +  ++    ++    IN V +DSR ++ G +F  I G   DGH F 
Sbjct: 1   MKLT---LGDVQHCLTGMAEECREFA--VINAVRTDSRAVEPGDLFFCIEGWNFDGHEFA 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA  +GA A+V S                P+++V +T + L   AS         ++AV
Sbjct: 56  AQAETRGAVAVVASR--------MPEGVTVPVIMVRDTVRALGQLASCWRDLCGSILVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++V   +  +  R    +      +                          S Q
Sbjct: 108 TGTAGKTTVKEMLAAVVSRKFTVAKNYRNLNNQIGLPVSML-------------KADSGQ 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  S  G  +             TN+G  H++          AK  L + +  +
Sbjct: 155 EVWIMELGISVKGDMEELAVIASPDVAVITNVGPGHLEGLGDVAGVARAKSSLLKYM-RQ 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+  D             +     +         +        + +  +       
Sbjct: 214 DGTAIVSKDYPELWAAATELTGSPVGFSTSDESASCHAVFLGADDDGRGRFRLRTPTGQG 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P  G+    N    A    A+G+    ++  ++ +     RF        G  + +
Sbjct: 274 EFTAPFCGDHYAENVACVAAAANALGLPFDDIVAGVQAVEADCQRF---CCRPMGDALVI 330

Query: 361 D--YAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLADIAI 414
           D  Y     S+   ++    +   R +V+        GD  Q +   +G++  D+A  A+
Sbjct: 331 DDTYNANPLSMGRSIRTAVAMAKDRPLVLVLGDMRELGDEAQARHEELGRLIRDVAPRAV 390

Query: 415 V 415
            
Sbjct: 391 F 391


>gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
 gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
          Length = 456

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 137/422 (32%), Gaps = 33/422 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ + + +  + ++   +      + + + VS DSR I+ G +FVA+ G + DGH ++  
Sbjct: 2   LKAMTFSELSQALSARVLS----SDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLND 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
             A+GA   +V              S  P L+V +TR  L    +       + + AVTG
Sbjct: 58  VAAKGAVGALVQCEVP--------ESTLPQLLVADTRLALGQLGALNRAAFDKPVAAVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++V   +  + +  G      G  +             P                 
Sbjct: 110 SSGKTTVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPE-------------HTA 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS  G +      +     +  N                        E L    
Sbjct: 157 AVIELGASRVG-EIAYTVALTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFD 301
            A++  DD   +    RA        +V       H   +          T+        
Sbjct: 216 TAVLNLDDKAFETWRARAAGRKVLTFAVLNAAADFHASDITVDARGCPSFTLHTPQGREP 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   V NAL AA    A+G+    +   L  +  V GR       +    I   
Sbjct: 276 VQLNLLGNHNVANALAAAAAAHALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDT 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTD 417
           Y    +S+   +  ++    GR ++V G  G+     +QG R  +G  A    D      
Sbjct: 336 YNANPSSINAAVDLLKGF-DGRKVLVLGDIGELGEWAEQGHR-EVGAYAAGKVDALYAVG 393

Query: 418 DN 419
            N
Sbjct: 394 PN 395


>gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 458

 Score =  120 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 146/411 (35%), Gaps = 24/411 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V  
Sbjct: 9   IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      I+ + P ++V+NT   L   A  +  K    ILA+TG+ GK+SV     
Sbjct: 69  K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +++G +   I   +               P+ L +            + + AS  G 
Sbjct: 120 SILRKNGNTISTIDNLN----------NNIGVPMTLLQLKQEHK---YGVIELGASKPGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  +  +       N+   H+   ++      AK  +F  L P  +  I      +S+
Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQ 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                 ++          +        +    +    T+       +   P  G   + N
Sbjct: 227 WKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+    A+ I    +   L    +V  R E +        I   Y    +S+   +K
Sbjct: 287 ALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIK 346

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +  +   +I+V       G+       ++G  A   A   I +  +  SE
Sbjct: 347 VLERMPGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397


>gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
 gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
          Length = 437

 Score =  120 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 116/364 (31%), Gaps = 23/364 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR    G IF+A+ G   DG+ F   A+ +G    VV      +        +   
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAK------ADDGRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     + P  ++ +TGT+GK++    +  +              + 
Sbjct: 70  ILVDDALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                +  + + AS  G  +  +  ++   G  TN+
Sbjct: 130 DVGVPRTLLGIRPE-------------HEIAVIEMGASHPGDIEKLVKYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +    E+  +   +         
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLKAHDGLLFLNESNVDLMEMAAQREFSRIITYGQDE 236

Query: 273 QGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                              Q ++        +    L G + + N L A  + +  G+  
Sbjct: 237 TADVQGNVVSCAPFLKFIWQALSHQPSSGTCEVQTHLIGSYNLDNMLAAIAIGLHFGVTP 296

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V   LE       R +     +    I   Y    +S+   ++N R +     + + G
Sbjct: 297 QQVCHALENYIPHNNRSQLT-ETAHNRLIVDAYNANPSSMAAAIENFRLMQVKDKMAILG 355

Query: 390 CGGD 393
              +
Sbjct: 356 DMRE 359


>gi|288803774|ref|ZP_06409202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
 gi|288333761|gb|EFC72208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
          Length = 440

 Score =  120 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 118/367 (32%), Gaps = 26/367 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IFVA+ G   DG+ F   A+ +G    ++      +        +   
Sbjct: 16  VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAG------DERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    +  +              + 
Sbjct: 70  ILVDDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                +  + + AS  G  +  +  ++   G  TN+
Sbjct: 130 DVGVPRTLLGIRPE-------------HEIAVIEMGASHPGDIEKLVTYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L        +   +    E+ ++             
Sbjct: 177 GRAHLQGFGSFEGVKKTKGELYDFLKAHGCLLFLNESNPDLTEMAEQRAFDRIITYGQDE 236

Query: 273 QGKFIHLKKVCAIHNKQQV------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     CA   K +       T       ++    L G + + N L A  + +  G
Sbjct: 237 TADVQGYVVSCAPCLKFEWQSSSLNTHQPAPTIYEVQTHLIGSYNLDNMLAAIAIGLHFG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    +   LE       R +     +    I   Y    +S+   ++N + +     + 
Sbjct: 297 VTPQQINYALENYVPHNNRSQLT-ETAHNKLIVDAYNANPSSMAAAIENFQLMEVENKMA 355

Query: 387 VFGCGGD 393
           + G   +
Sbjct: 356 ILGDMRE 362


>gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 472

 Score =  120 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 156/463 (33%), Gaps = 28/463 (6%)

Query: 10  DFPELINQLSIFPMQWRERK--INE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +  EL  +  +      + +  + +  V  DSR +  G IFVA+ G   DGH +I +  A
Sbjct: 6   NIEELSLKFPVTVAGNGDVRGIVTDPVVVIDSRAVVDGAIFVALQGEHTDGHQYIDEVFA 65

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA   +V  A+   + +         LVV++    L   A+         ++AV G++G
Sbjct: 66  KGAHWAMVKKAWYESEGAPAAPEGCGFLVVEDPVAGLQRLAAIYRQTFSIPVIAVGGSNG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    V  +           G          +N L  P  +   +  + ++   +   
Sbjct: 126 KTTTKEMVAAVLGTGFTVQTSKGNL--------NNHLGVPLTLLQLRRQTGIAVVEMGIN 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                   L+  R        G  TN+G +H+++    +     + RLF  L        
Sbjct: 178 HPGEMELLLELAR-----PTHGLLTNIGHEHLEFLLNLEGVAAEETRLFRYLQQHGGTCF 232

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD + KE  +    +     +   Q              +        G        
Sbjct: 233 VNADDLWLKEAAEGLTGSFTYGTADDSQIACQARHIAVDRSGRVSFEFVSGGLSERIALH 292

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
             G+  V NAL AA +    G+    + + LE L   PG       ++ G  +  D Y  
Sbjct: 293 FIGKHNVINALAAAAVGTYFGLSLEQIKKGLEALRPSPGWKRLEVQDAGGVVLINDTYNA 352

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            S+S+ + +  +  I   G+ I V G     G+    +    G+         + T    
Sbjct: 353 NSDSMRLAIDALVDIPCSGKKIAVLGDMLELGEAGIVEHEKTGRYIQQSPIDLLFTYGRH 412

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                      I  G        NR + +     ++   D ++
Sbjct: 413 AR------LYGIEAGARCHGHYENRQKLLDELKMVVQPGDAVL 449


>gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) [imported] - Buchnera sp. (strain APS)
 gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 455

 Score =  120 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 146/411 (35%), Gaps = 24/411 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  INE+  D++ I  G +F+A++G K D H+FI  A+ +   A V  
Sbjct: 9   IALITNGTLYGADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDALKKKCAAFVTQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      I+ + P ++V+NT   L   A  +  K    ILA+TG+ GK+SV     
Sbjct: 69  K---------NIKPHVPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKTSVKEMTA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +++G +   I   +               P+ L +            + + AS  G 
Sbjct: 120 SILRKNGNTISTIDNLN----------NNIGVPMTLLQLKQEHK---YGVIELGASKPGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  +  +       N+   H+   ++      AK  +F  L P  +  I      +S+
Sbjct: 167 IAYTSNISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQ 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                 ++          +        +    +    T+       +   P  G   + N
Sbjct: 227 WKKDIKNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A+    A+ I    +   L    +V  R E +        I   Y    +S+   +K
Sbjct: 287 ALAASAFSFALKIPLKKIKIGLLDTPIVSKRLESIILEPNKILIDDTYNSNVSSMISAIK 346

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +  +   +I+V       G+       ++G  A   A   I +  +  SE
Sbjct: 347 VLERMPGYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSE 397


>gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 460

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 133/407 (32%), Gaps = 29/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   I +    +   +     +  + ++N V  D+R +  G +F+ + G   DGH FI
Sbjct: 1   MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +        D +  +    P LVVD+        +     K    ++AV
Sbjct: 58  ENAIKGGAVATLW-----ASDHTDRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   SG  +      +  +       +                  
Sbjct: 113 TGSNGKTTTKDMIASV--LSGEFNVTKTYDNFNNEIGVPYTILQMESNT----------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G        ++      T +G  HI++  T+    +AKM +   L   
Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKAD 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D     +++RA       ++ G            +              D 
Sbjct: 220 GYFIY----DGDEPLLIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G++ V NAL A  +     I    +++ L    +   R E++  N     +  
Sbjct: 276 KVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSD 335

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG 403
            Y     +   +L         GR IVV G     GD+       + 
Sbjct: 336 VYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSPQMHASLA 382


>gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0012]
          Length = 474

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVESSNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2141]
 gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0645]
          Length = 474

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 457

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFL 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441


>gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
 gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
          Length = 454

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 89/469 (18%), Positives = 172/469 (36%), Gaps = 38/469 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + ++       E  I+ VS+D+R I+ G +FVA+VG + D H F  QA+ 
Sbjct: 1   MIKVTLSQIAD-ITRGERFGDELLIDAVSTDTRTIERGALFVALVGERFDAHNFCQQAVD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V     +         N P +VV +T+  L  FAS ++       +A+TG+ G
Sbjct: 60  AGAGALLVEKRLDV---------NVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I Q  G   F  G  +               P+ L              +
Sbjct: 111 KTTVKEMVASILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   +      A      + L     AI
Sbjct: 158 ELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLSAGGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDF 302
           +  D     +  +   +      S            +           + I+   ++ + 
Sbjct: 217 VNLDSNGEAKWDEVLADKKVITFSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIEL 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+  V NA+ A+ + + +G     V   L+ L+ V GR E    + +   I   Y
Sbjct: 277 SLGIIGQHNVANAIAASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSY 336

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +  +++  +  +      R +++      G+        +G+ A       ++T    
Sbjct: 337 NASVPAMKAAVDLLAAFPGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLT---- 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKG 468
              D + I +++  GI  F      IE I+  ++        ++V  KG
Sbjct: 393 YGADAKVI-SDLCQGI-HFETHQEMIEYIKQHLDQAVPENHTILV--KG 437


>gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 467

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 146/412 (35%), Gaps = 32/412 (7%)

Query: 1   MKLQDL--IYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L DL  I K   E+ + ++  I   ++   KI  VS+DSR I  G +++ +VG   DG
Sbjct: 2   MALGDLKMIEKTLSEIAHMINGEISDEKFSAIKIKGVSTDSRTIDPGELYIPLVGEVFDG 61

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            +FI +   +GAEA ++     +    +      P + V +T+K L   A+    +    
Sbjct: 62  RIFIKECEDKGAEAFIIDDPTKINKTVS-----IPYVRVADTKKALQDLATAYRKELSCK 116

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++    + +I      +    G  +      +      P           
Sbjct: 117 VIGITGSNGKTTTKDLLYKILSEKYKTQKTCGNLNNEIGVPKTVLSLDPD---------- 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                V  + +   + G        +K      TN+G  H+   +T+     AK+ + E 
Sbjct: 167 ---TEVAIIELGTDNFGDISLTSRMVKPHIAMITNIGDAHLHNLKTRSGILKAKLEILEG 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +                  + +       +   + +        K+    +     I   
Sbjct: 224 MEDDGIFIYNI----DDPTMKEEIPTYDIKQKVLSFGRSDKADFKIVFEKSPTS-IIRFS 278

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            ++  F  PL GE  +YNA     +   +G++  ++     ++     R E +  +    
Sbjct: 279 HENDHFEVPLMGEHNIYNAAAVVMISEMLGLNKEMIDAGFMEVKSSQNRTELLECDGFD- 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK 404
            +   Y     SL   L+    +    R IV        G+ +      +GK
Sbjct: 338 ILDDSYKSNPQSLLAGLETTYMLEGYKRKIVCLADMLELGENEVDLHREVGK 389


>gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 487

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 159/481 (33%), Gaps = 53/481 (11%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++       +   +  I  +S DSR ++   +FV I+G   D H F+ QAI  GA A+  
Sbjct: 12  VLATGGTLLLGKEDTPIRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNGAAAVFT 71

Query: 74  SSAYSLQDFSATI----RSNTP---------ILVVDNTRKFLSLFASRLYGKHPENILAV 120
           S     ++  A I      + P          + V +T+K L  F      +    ++ +
Sbjct: 72  SRHRQPEEVRADIIRQCGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQKLPLVGI 131

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +              G +++              PI +A   +     
Sbjct: 132 TGSVGKTTTREMIAAALSAGFTVYKTPGNSNSQ----------VGVPITIA---AIPKQA 178

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S  G         ++     TN+G  HI+   +Q      K+ + + +   
Sbjct: 179 QIGVIELGMSEPGEMTRIARIARVDCAVMTNIGVTHIEQLGSQDNILKEKLHIQDGMAEN 238

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S  +   D      + +       ++L           + +  ++     +   E K  
Sbjct: 239 GSLILNGDDRLLRSVIPE---GNRRKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRV 295

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G   V NAL A  +    GI        LE+     GR +          I  
Sbjct: 296 TVRLRVMGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIFTLKGGITVIDD 355

Query: 361 DYAHTSNSLEMILK---NIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIA 413
            Y  +  S++  L+   ++    +GR I V       G         +G+ IA+   D  
Sbjct: 356 SYNASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELGPDAPRFHREIGEYIAVHPVDQV 415

Query: 414 IVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           ++            + AEI HG+         +      +  +     L + D ++   K
Sbjct: 416 VL---------LGGLAAEIGHGLCASSSPVPVVFCEELEQVGQWLNGNLKQGDCVLF--K 464

Query: 468 G 468
           G
Sbjct: 465 G 465


>gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
 gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
          Length = 454

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 149/474 (31%), Gaps = 55/474 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  +  ++     L + L        + +IN + +D+R + +G +F+A+ G   DGH FI
Sbjct: 1   MNSKLSLFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA+  GA A+V             +       +V++T       A+    +    I+ V
Sbjct: 61  PQALTAGAIAVVTDRPVE------GLGETVAQFLVEDTLVAYQHIAAGWRQRFTIPIIGV 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +  + G         +      +     +P               
Sbjct: 115 TGSVGKTTTKELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPD-------------- 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 VE +  G  Q  L            TN+G  HI    + +              
Sbjct: 161 -HDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGS-ELAIAEAKCELLAHQ 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P ES AI+  D+A   E  +R          +        +     I +   + +     
Sbjct: 219 PPESTAILNRDNALLMETAQRFWQGKTITYGLEGGDVHGTVDGENLILDGVSLPL----- 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G     N L A  +   +G+D   +      + +  GR            +
Sbjct: 274 ------PLAGVHNASNYLAAIAVAQCLGLDWQQLQ-SGLTVELPKGRARRYQWGQDVVLL 326

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414
              Y     S+   L  +      R + V G     GD        +G     L  D   
Sbjct: 327 DETYNAGLESMLASLDLLANTPGKRRLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLF 386

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLV 463
           +  ++P +         I  G  G   +      + + A++T    L   D L+
Sbjct: 387 LLANDPNT-------DAIAAGANGVETQSFSDGPSLVAALKT---TLQPGDRLL 430


>gi|302345941|ref|YP_003814294.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
 gi|302149087|gb|ADK95349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
          Length = 469

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 118/367 (32%), Gaps = 26/367 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IFVA+ G   DG+ F   A+ +G    ++      +        +   
Sbjct: 45  VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAG------DERY 98

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    +  +              + 
Sbjct: 99  ILVDDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNN 158

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                +  + + AS  G  +  +  ++   G  TN+
Sbjct: 159 DVGVPRTLLGIRPE-------------HEIAVIEMGASHPGDIEKLVTYVEPTCGLITNV 205

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L        +   +    E+ ++             
Sbjct: 206 GRAHLQGFGSFEGVKKTKGELYDFLKAHGCLLFLNESNPDLTEMAEQRAFDRIITYGQDE 265

Query: 273 QGKFIHLKKVCAIHNKQQV------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     CA   K +       T       ++    L G + + N L A  + +  G
Sbjct: 266 TADVQGYVVSCAPCLKFEWQSSSLNTHHPSPTIYEVQTHLIGSYNLDNMLAAIAIGLHFG 325

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    +   LE       R +     +    I   Y    +S+   ++N + +     + 
Sbjct: 326 VTPQQINYALENYVPHNNRSQLT-ETAHNKLIVDAYNANPSSMAAAIENFQLMEVENKMA 384

Query: 387 VFGCGGD 393
           + G   +
Sbjct: 385 ILGDMRE 391


>gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 133/407 (32%), Gaps = 29/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   I +    +   +     +  + ++N V  D+R +  G +F+ + G   DGH FI
Sbjct: 1   MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGAH-DGHDFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +        D +  +    P LVVD+        +     K    ++AV
Sbjct: 58  ENAIKGGAVATLW-----ASDHTDRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   SG  +      +  +       +                  
Sbjct: 113 TGSNGKTTTKDMIASV--LSGEFNVTKTYDNFNNEIGVPYTILQMESNT----------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G        ++      T +G  HI++  T+    +AKM +   L   
Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKAD 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D     +++RA       ++ G            +              D 
Sbjct: 220 GYFIY----DGDEPLLIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G++ V NAL A  +     I    +++ L    +   R E++  N     +  
Sbjct: 276 KVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSD 335

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG 403
            Y     +   +L         GR IVV G     GD+       + 
Sbjct: 336 VYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSPQMHASLA 382


>gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
 gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
          Length = 488

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 167/480 (34%), Gaps = 43/480 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L +++  E +    +      ER     V++DSR +  G +FV +VG  +DGH +I QA+
Sbjct: 17  LSFRETIEAVAGKYVCLAGAAERFHFTNVTTDSRTVTDGSLFVPLVGETQDGHKYILQAL 76

Query: 65  AQGAEAIVVSSA-----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NIL 118
            QGA  +            L         +   +VV NT   L   A+    K P+   +
Sbjct: 77  EQGARVVFADLESYECLAGLFMDFLENYPDAVFIVVKNTLTALQCAAAAYVKKFPDLIKI 136

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG+SGK++    +  +  R        G  ++           T  P+ + K  +   
Sbjct: 137 GITGSSGKTTTKELIAAVLSRKYTVVMNEGNLNSE----------TGLPLSVFKIRAE-- 184

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  +  G      + +       TN+G  HI    ++ A    K ++F    
Sbjct: 185 -HEVGIFEMGMNRKGEIAELANVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSRFT 243

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A I A D Y+  + +       R          I    +               +
Sbjct: 244 -ADCVAFIPAADPYADFLAENCGGTVVRYGVNTDPVSRIKNAGLAGTEFL--------YR 294

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               L PLPG     +AL AA L   +G  +  +   LE +  + GR + +G      + 
Sbjct: 295 QVPILLPLPGAGNFSDALAAASLASYMGFGADDIKAGLESVRPLFGRSQIIGGPVSVVQD 354

Query: 359 YVDYAHTSNSLEM--ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
              Y    +S+E          I  GR I V G     G   +       + A     + 
Sbjct: 355 C--YNANPDSMEQALDFFASLDIEPGRKIAVLGDMLELGAESESAHVAAVRSAAASGAVL 412

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEM----LNKQDVLVVAGKG 468
           +V      S   E++  E   G        +  +A I  A  +    L + DV+++  KG
Sbjct: 413 LVCIGRAVSAAAERLVREDRVGSVRVECFADSSDAVISDAAALLCGFLRRGDVVLL--KG 470


>gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
 gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
          Length = 453

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 152/395 (38%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRE-------- 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 71  -LEADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +     G   + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DGYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLREGAVAIVNLDSNGGEHWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
          Length = 465

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 163/479 (34%), Gaps = 45/479 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+ +KD  +L   L        +  I  +S+DSR I+ G  FV +VGN  DGH ++  A 
Sbjct: 2   DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAF 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G +A VVS  Y+       + +  P  VV +T       A          ++AVTG+ 
Sbjct: 62  DLGIQAAVVSEKYN-----GLVPTGLPHWVVPDTLYAYQQIALLHRRNLSLPVVAVTGSV 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ I    G      G  +      +     +              +     
Sbjct: 117 GKTTTRELIRAILSPLGEIVSSRGNENNDVGVPKTLLSGS-------------ETDAAFV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G         +      TN+G+ HI    +++    AK  +   L P     
Sbjct: 164 LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVI 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301
           I + D    K ++++      RV   G+   ++            +     +    +   
Sbjct: 224 IPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFALQDIEPDYISQIDMQNNFI 283

Query: 302 ------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F  PL G     N L+A  +   +G+    + +    + +   R         G
Sbjct: 284 LFEGRKFKLPLEGRHNAMNFLLALTVATELGLSIKKLDQLKINMPIGRNRL-----VDCG 338

Query: 356 GRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
             + +D  Y  +  S+   L+ + +   GR   V G     G         + K A++L 
Sbjct: 339 QYLVLDETYNASPESVIASLELLVS-KPGRHFAVLGTMLELGSESILLHQKVLKKAIELG 397

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +        E+   I+  I   +P         +A  + +  L+  D +++  KG
Sbjct: 398 LTGIVFVSC---GEESNIIKKTIKE-LPNHDVVSTPKDAAMSLLPWLSPGDNILI--KG 450


>gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
 gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
          Length = 474

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKNTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis 62]
          Length = 457

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 169/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A               +    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDVPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441


>gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.
           [Bacillus cereus E33L]
 gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus E33L]
          Length = 454

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/474 (16%), Positives = 173/474 (36%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 4   MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHEYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA + +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 57  KEAMDNGAISSLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   ++ I + +       G  ++              P+ + +        
Sbjct: 111 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ----------IGLPLTILEMKRDTE-- 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E       Q R                              AK +L      +
Sbjct: 159 ---FLILEMGMSEKGQIRNLSRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLR 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E+   +Y  D     +  R +           +     L       ++  V   +     
Sbjct: 216 ENGLFLYNGDE---PLFSRNNKTSGVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKI 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  ++N +V   +     + +  + E L+++++   RF+F+        I  
Sbjct: 273 QYDVPLHGKHNIFNTIVGIAVGQFYKVPTEKIQEALQQINITQMRFQFLTAKIGFTIIND 332

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + I+V G     G + +     +GK+  + +   + T
Sbjct: 333 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKKAETYHREIGKMLNEESIQYVFT 392

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  + +  E              N+ E     ++++ K+DV+++  KG
Sbjct: 393 ----YGELAKIVAEEASKKYDTGKVQSFDNKAEIAEEVLKVITKKDVVLL--KG 440


>gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 460

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 158/452 (34%), Gaps = 48/452 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      E          QW++ +I  V+ DSR + +G +F+ + G + DGH ++
Sbjct: 3   MKLAEIAKAIGAE------NNIEQWKDVEITSVAFDSRQLDSGALFIPLQGAQ-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A +        D   T   + PILVVD+  + L   +     K    ++AV
Sbjct: 56  ESAFANGAVATLW-----ASDHDVTTTEDQPILVVDDPLESLQQLSKYYLHKINPIVVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++       I       +      +               P+ L    S     
Sbjct: 111 TGSNGKTTTKDMTASILSTQLNVTKTHANFN----------NEIGVPVTLLNMESS---T 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G     L  +     +   +  +        +             L +
Sbjct: 158 EVVVVEMGMDRPG-QLDFLSKLVSPDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGLKE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     + +RA N   R ++ G Q            H         E  D 
Sbjct: 217 DGTFIFNGDEP---LLQERAANVEQRKVTFGRQLTDDFYATSVNQHETSIDFKVNEWPDE 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ GE+ V NAL A  +   + I  A + + L+ + +   R E+V        +  
Sbjct: 274 EFTIPMVGEYNVNNALAAIAVGKQLHITPAHIKKALKNVELTENRAEWVNGAQGERILSD 333

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     + + +LK I  +  +G+ I V G   +       +   +A ++          
Sbjct: 334 VYNSNPTAAKQVLKTIEELPTTGKRIAVLGDMLELGDASARLHASLAANI---------- 383

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
               DP+KI    + G     E  N  +A+  
Sbjct: 384 ----DPKKIEEVYLVG----SEMENLQDALEK 407


>gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 454

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/474 (16%), Positives = 178/474 (37%), Gaps = 43/474 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+++ +      +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 4   MNLKKL-----EEVVDGVG-LQESFHHIEIHGVCIDSKNIKEGNLFVPIIRVK-DGHGYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A          ++ +
Sbjct: 57  KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++              P+ + +        
Sbjct: 111 TGSNGKTTVKDIISTILSTTHRVHKTKGNFNSQ----------IGLPLTILEMKRD---T 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G  ++     +      T +G+ H++   +++    AK+ + + L  +
Sbjct: 158 EFLILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEE 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + ++ R +N          +     L       ++  V   +     
Sbjct: 218 GLLLYN-----GDETLLSRKNNVLVLECKSFGEKDTNDLFPTNVQLDEYGVHFKLNDSKI 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  + N +V   +     + +  + + L ++++   RF+F+   +    I  
Sbjct: 273 QYDVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQFLTAKTGFTIIND 332

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + I+V G     G   +     +GK+        + T
Sbjct: 333 AWNASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKEAETYHREIGKMLNQENISYVFT 392

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E  E +  E              N+ +     ++++ K+DV+++  KG
Sbjct: 393 ----YGEMAEIVAEEARKKYDTGKVQSYNNKAKIAEEVLKIITKKDVVLL--KG 440


>gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-63q42]
 gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile ATCC 43255]
          Length = 457

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/458 (16%), Positives = 157/458 (34%), Gaps = 29/458 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L     +    + +  ++++  DSR   A   FVAIVG   DGH F+  A   G +  + 
Sbjct: 11  LATNGKLIYGDYNDC-VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI- 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +  +      S+  ++ V +T   L   +     K     + VTG+ GK++    +
Sbjct: 69  ---KNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMI 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                            +               P+ L              + +  S   
Sbjct: 126 YSAISAKLNILKNEKNLNNHFGV----------PLTLFNLNKE---HECAVIEMGMSGFN 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++ +D +       +N+G  H++   +Q+    A          + +  I+  DD + 
Sbjct: 173 EIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKA-KMEITSNFDETNTLIVNGDDKFL 231

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             + ++ H    +          ++ +      +       + GK  +   P  GE  +Y
Sbjct: 232 STLKEKEHAYKLKTFGFNK-NNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIY 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A  + + + I    + + L+       R + +        I   Y  + +S++  L
Sbjct: 291 NAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLDIIKNEKL-TIINDSYNASPDSMDAAL 349

Query: 374 KNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           K +      R+ +   +   G   + G R ++GK +++  DI I   +N      E    
Sbjct: 350 KILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVFIGEE--AK 406

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++           NR +      E++   D ++V  KG
Sbjct: 407 QLGFNSANIYHFENREDVFNKLNELVKTGDTILV--KG 442


>gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
 gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
          Length = 485

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 150/382 (39%), Gaps = 33/382 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +++D+R I+ G IF+A+ G+  DGH +I  A++QGA A +VS   S         ++ 
Sbjct: 56  TRIATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRPIS---------TDI 106

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P LVV++TR  L   AS    +H +  ++A+TG+SGK++    +  I  R   +    G 
Sbjct: 107 PQLVVNDTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGN 166

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                + L+             + + A+  G   +  + ++      
Sbjct: 167 LNNDLGVPMML-------LELSDHHR------YAILELGANHIGEIAYTTEIVQPDVACI 213

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+    +++     K       L     AI+   D ++ ++ + A      V+ 
Sbjct: 214 LNIGTAHLGEFGSREGICQTKA-EIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIG 272

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G          V     + +  + +  +  D   PL GE  V NAL AA    A+ ID 
Sbjct: 273 FGNTDVSASHLDVE--PERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIDI 330

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVV 387
             ++  LE      GR     +   G    +D  Y    +S+    K +   T  +++V+
Sbjct: 331 NDIVVGLENARPAKGRLN---SQLLGMHRLIDDTYNANPHSVRAAAKVLAAQTGTQVMVL 387

Query: 388 --FGCGGDRDQGKRPIMGKIAL 407
                 GD    +   +G+   
Sbjct: 388 GDIAELGDAAVSEHQSLGRTIA 409


>gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 454

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 160/428 (37%), Gaps = 35/428 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I +++   +   +  I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V 
Sbjct: 9   IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQAFEAGAGALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         N P +VV +T+  L   AS ++       +A+TG+ GK++V   V 
Sbjct: 69  KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +               P+ L              + + A+  G 
Sbjct: 120 SILQQKGNVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAY 252
             +    +K       N+   H++   + +    AK  +++ L       +      D  
Sbjct: 167 IAYTTQLVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDTL 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V+           +        ++           + IS + ++ +    + G+  V
Sbjct: 227 WQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A+ + + +G     +   L  L+ V GR +    +S    I   Y  +  +++  
Sbjct: 287 ANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAA 346

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428
           +  +      R +++      G+        +G+ A       ++T   D        KI
Sbjct: 347 VDLLGAFRGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD-------AKI 399

Query: 429 RAEIIHGI 436
            +E+ HGI
Sbjct: 400 ISELCHGI 407


>gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2137]
          Length = 474

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
 gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
          Length = 476

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/444 (15%), Positives = 143/444 (32%), Gaps = 39/444 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF+A+ G   +G+ F   A+ +G    +V  A   +        N   
Sbjct: 51  VTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAEAG------NNRF 104

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN        A          ++ +TGT+GK++    +  +          +G  + 
Sbjct: 105 ILVDNALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNFNN 164

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +     T                 +  + + AS     +  +  ++   G  TN+
Sbjct: 165 DIGVPRTLLEMTSD-------------DEIAVIEMGASHPKDIEKLVTYVEPTCGLITNV 211

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +   N K  L++ L    +   +   +    E+ ++             
Sbjct: 212 GRAHLQGFGSFEGVKNTKGELYDYLKAHNALLFLNESNPDLVEMAEQREFERVITYGQDN 271

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVAAGLCIAI 325
                     CA   K     +            ++    L G + + N L A  + +  
Sbjct: 272 TADVKGEVVSCAPLLKFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNMLAAITIGLHF 331

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G++   +   LE       R +          I   Y    +S++  ++N R +     +
Sbjct: 332 GVEPQKICHALESYVPSNNRSQLT-ETKDNKLIVDAYNANPSSMKAAIENFRLMDIKNKM 390

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            + G            +G +  +     +        E+   +  E       F +  + 
Sbjct: 391 AILGDM--------RELGDVTAEEHQRVVDELIASGLENVWLVGEEFGKTNCSFRKFADI 442

Query: 446 IEAIRTAIEMLNKQD-VLVVAGKG 468
            E ++ AI      D  +++  KG
Sbjct: 443 EE-VKAAIAAQKPIDHYILI--KG 463


>gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 457

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAKLTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441


>gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0043]
 gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF]
          Length = 474

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4000]
 gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0017]
 gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0027]
 gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4244]
 gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0312]
 gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1302]
 gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1341]
 gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309B]
 gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309A]
 gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1467]
          Length = 474

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
 gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
          Length = 457

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441


>gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Asticcacaulis excentricus CB 48]
 gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Asticcacaulis excentricus CB 48]
          Length = 462

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 101/480 (21%), Positives = 166/480 (34%), Gaps = 55/480 (11%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            +L+                         ++ DSR +Q G IF+A+ G + DGH F+ QA
Sbjct: 8   TELLKATGGTFAGLSGDASALHA----TGITFDSRQVQPGDIFLALSGVR-DGHDFVGQA 62

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            AQGA   +                  P L+V +  K L    +    + P    AVTG+
Sbjct: 63  FAQGAVCALTRKPVD----------GGPCLMVPDVLKALEKLGAYARDRAPAMRGAVTGS 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+SV   V     R+G +   +   +               P+ LA+  +        
Sbjct: 113 VGKTSVTQMVMAALSRAGRAHSAVKSFNNH----------IGVPLTLARMPADTERAVFE 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-HIDYHQTQQAYFNAKMRLFEELLPKES 242
                  +H  +   L  +              H +     +           + L    
Sbjct: 163 IGM----NHANEITPLSELVEPDAVIITTVGAVHTENFPDGEEGVMKAKAEIFDGLKYGG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            AI+ AD+ +  E+ +RA   G +V   G  +G    L     +  + QV  ++ G+D  
Sbjct: 219 LAILNADNHWFAELNERASEMGAKVQCFGEAEGADACLISHEVVDGRAQVCATLHGRDIA 278

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYV 360
           F     G+ Q  NAL    +C A+ +D+A  L  L     + GR  E     + G    +
Sbjct: 279 FTLAHTGKHQALNALSVLLMCEALKVDTATTLAALSAFEALDGRGAEHQIAVAGGHVTLI 338

Query: 361 D--YAHTSNSLEMILKNI---RTITSGRIIVVFGCGGDR--DQGKR--PIMGKIALDLAD 411
           D  Y     S+   L  +   R +T GR I V     +   D+ KR   +   +     D
Sbjct: 339 DESYNANPISMVATLNALAARRLVTGGRRIAVMTDMLELGPDELKRHAALAPALTAAGVD 398

Query: 412 IAIVTDDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              V     R      PE +R          +E       ++TA+      D++++  KG
Sbjct: 399 QVFVAGPLMRALWDVLPEALRGAYAATAAELLEP------LKTAL---RPNDIVMI--KG 447


>gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 472

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 88/473 (18%), Positives = 170/473 (35%), Gaps = 41/473 (8%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              E++            +   + ++ DSR   +  +F+AIVG + DGH F+ QAI  G 
Sbjct: 8   TLSEIVQATGGERFSGTPDLCFSGIAIDSRTAMSSDLFIAIVGERLDGHDFVRQAINGGV 67

Query: 69  EAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
             IV+   ++    ++   +     +VV +T + L   A++       +I A+TG++GK+
Sbjct: 68  RGIVIDKKHAESFSYARMAKLELGCVVVPDTTEALGKIANQYRKGFGVSIAAITGSNGKT 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +       +           G          +N++  P  +         +      V +
Sbjct: 128 TTKELTAAVLAAKYRVHKSTGN--------HNNQIGLPFTLLGLGPAHQWA-----VVEL 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +  G         +   G  TN+G  H++   + +    AK  L E +      A++ 
Sbjct: 175 GMNHFGEIARLTQICEPDIGVITNVGPGHLEGLGSVEGVLAAKGELLENMA--NKTAVLN 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD     +  +    G  VL        +  K +   +   + T+ ++ ++      L 
Sbjct: 233 LDDKLVSTLADK--YQGETVLFGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLH 290

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V+NAL AA + ++ G+    + + LE ++ V GR   V   +    I   Y     
Sbjct: 291 GDCMVHNALAAAAVGVSAGVSPKEIRDALETVNPVKGRQNVVSLGNDVQLIDDAYNANPA 350

Query: 368 SLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           S    +  ++ +   + GR+I+        GD        +G++A       +       
Sbjct: 351 SFAAAVMTLQALAKASKGRMIMAVSDMMELGDYSVDAHMELGRMAAQAGVSLLFISGYYA 410

Query: 422 SEDPEKIRAEIIHGIPGFIE-----KGNR-IEAIRTAIEMLNKQDVLVVAGKG 468
                K   E   GI             R  EA+         +D ++V  KG
Sbjct: 411 GWT-AKGAREAGMGIDQVFIDEKPNIVTRLAEAV-------QAKDRILV--KG 453


>gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
 gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
          Length = 453

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 152/393 (38%), Gaps = 26/393 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V            +
Sbjct: 21  DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQALTGGAVALLVQRE---------L 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   + 
Sbjct: 72  EADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYT 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +               P+ L ++ +     G   + + A+  G   +    +K   
Sbjct: 132 QGNFN----------NDIGVPLTLLRSTAE---DGYAVIELGANHIGEIAYTTALVKPDV 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H++   +      A      + L + + AI+  D    +       +   +
Sbjct: 179 ALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLREGAVAIVNLDSNGGEHWKAVLADKTVK 237

Query: 267 VLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             S        + + V          T+     + D    + G+  V NAL AA L + +
Sbjct: 238 TFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSAAALSLEM 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G   A +   L  L  V GR +          I   Y  +  +++  +  + + ++ R +
Sbjct: 298 GASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVRWL 357

Query: 386 VV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           ++      GD        +G+ A       ++T
Sbjct: 358 ILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 445

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 161/463 (34%), Gaps = 50/463 (10%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL   L        + ++   S DSR +  G +F A+ G + DGH F+  A+ +GA   V
Sbjct: 5   ELAKVLRGELRGDPQARVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDAVDRGAVGCV 64

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V          +        + V +T++ L   A    G     ++ V G+ GK++    
Sbjct: 65  VERDVEHAGKFS--------IKVSSTQEALRELALYRRGIFRGEVVGVAGSVGKTTTKEL 116

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +   +  S    G  ++         +  P  +      +         + + AS+ 
Sbjct: 117 IHHLLSNAAASFRSEGNLNSQ--------IGLPLVV-----CNMPLEVDYAVLELGASAV 163

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G  +  ++  +      T LG +H++   T +        +F          I +    Y
Sbjct: 164 GDVERLVEVAQPKVRVITALGEEHLESFGTLEDVVKGNGEIFRGFTEDSRAVIPHYALEY 223

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                +R    G        +G  ++  KV       +     E     F  PL     V
Sbjct: 224 YDLPRERVTTFG--------EGGDLNAGKVRLSLKGTEFEFWGE----GFSVPLLSRGVV 271

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLE 370
            N L A G+  ++G D     E L+      GR   +   + G    VD  Y     S+ 
Sbjct: 272 QNVLAAFGVLTSLGYDPRDFREALKSFTPPQGRMNLL---NFGNFFVVDDTYNANPPSVR 328

Query: 371 MILKNIRTIT-SGRIIVVFGCGGDRDQG---KRPIMGKIALDLA-DIAIVTDDNPRSEDP 425
             L  + ++  + + + V G   +           +GK+  +L  D+ I        E+ 
Sbjct: 329 NALTTLASLQTTSKKVAVLGDMLELGVESGRYHAEVGKLGAELGIDVIIF-----HGEES 383

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++   E I      +    + + +   ++ +  +++++V  KG
Sbjct: 384 KRSYEECIKHGGNALFCDKKEDIVDELLKYMRDKNIILV--KG 424


>gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
          Length = 450

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 41/445 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NE+  +S+ I+ G +F+A+ GNK DGH +I  AI QGA A++VS    + D +       
Sbjct: 23  NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIADKNK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  K L   A           +A+TG+ GK+S    ++ + Q   L+    G  
Sbjct: 76  -IILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNHLGL-------------LINLASMPDDTEFAIFELGMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A      E   K+  A+I +D      ++          +  
Sbjct: 182 NISEAHLEFFNSLEDIAEA-KCEIFESFDKDGIAVINSDSNCYDRILSILKKLSIENIHN 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +     L        +  +   +     +   P   +    N      +   +  D  
Sbjct: 241 FGKSSSAELILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLN 300

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
               +L+ + +  GR   +        I   Y  +  S++  L+ ++ + +     + G 
Sbjct: 301 KAAGYLKNIPMTKGR-GKIINIGNSRIICDYYNASPTSMKAALEYLKQMPATNKTAIIGE 359

Query: 391 G----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEKG 443
                 + ++  + ++  I         +   N +      PEKI       I   I   
Sbjct: 360 MLELGQNSERLHKELVPYILDSGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIAST 419

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           N         ++    +++++  KG
Sbjct: 420 N---------DLFKNDELILI--KG 433


>gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
 gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
          Length = 454

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 88/469 (18%), Positives = 171/469 (36%), Gaps = 38/469 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + ++       +  I+ VS+D+R I  G +FVA+VG + D H F  QA+ 
Sbjct: 1   MIKVTLSQIAD-ITRGERFGDDLLIDAVSTDTRTIDRGALFVALVGERFDAHNFCQQAVD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V     +         N P +VV +T+  L  FAS ++       +A+TG+ G
Sbjct: 60  AGAGALLVEKRLDV---------NVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I Q  G   F  G  +               P+ L              +
Sbjct: 111 KTTVKEMVASILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   +      A      + L     AI
Sbjct: 158 ELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLSAGGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDF 302
           +  D     +  +   +      S            +           + I+   ++ + 
Sbjct: 217 VNLDSNGEAKWDEVLADKKVITFSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIEL 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+  V NA+ A+ + + +G     V   L+ L+ V GR E    + +   I   Y
Sbjct: 277 SLGIIGQHNVANAIAASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSY 336

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +  +++  +  +      R +++      G+        +G+ A       ++T    
Sbjct: 337 NASVPAMKAAVDLLAAFPGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLT---- 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKG 468
              D + I +++  GI  F      IE I+  ++        ++V  KG
Sbjct: 393 YGADAKVI-SDLCQGI-HFETHQEMIEYIKQHLDQAVPENHTILV--KG 437


>gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
 gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
          Length = 431

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 139/391 (35%), Gaps = 32/391 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+D+R I  G +F A+ G   D + F P+A+ QGA  +V+       D    I  + 
Sbjct: 14  TGVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVID------DPKYFIEDDE 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
              +  +  K L   A+    +    I+ +TG++GK++    +  + Q    +   +G  
Sbjct: 68  RYFLAKDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQTKFKTVATVGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L    S      +  V + A+  G  +   +  +   G  T
Sbjct: 128 NNH----------IGVPLTLL---SIPEDAEMAIVEMGANKQGDIEELCEIAEPTHGFIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H++           K  LF+ L   +    I + D     + KR           
Sbjct: 175 NIGRAHLEGMGGPAGVLKTKTELFQFLRANKGTVFINSQDPVLSNMAKRFDKPVLYPAKG 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +        +V  +     V  +VEG +  +L  L G +   N   A  +     ++  
Sbjct: 235 DF-------CEVGFVEANPFVKFTVEGTEEVYLSSLIGAYNFGNIANALAVGKYFEVEMK 287

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             +E +        R + +        I   Y    +S+E+ ++    +T  +  ++   
Sbjct: 288 GAIEAIVNYQPSNMRSQLL-EKRSNLIILDAYNANPSSMEVAIRTFGEMTGKKHKMIILG 346

Query: 391 G----GDRDQGKRPIMGKIALDL-ADIAIVT 416
                G+  + +   +G+I  +   +    T
Sbjct: 347 DMFELGEHAEEEHAKLGEIISEYEIEKVCFT 377


>gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter sp. PRwf-1]
 gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. PRwf-1]
          Length = 505

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 163/421 (38%), Gaps = 31/421 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L+          + +        +   + +D+R I+AG IF+AIVG   DGH F+  A+ 
Sbjct: 18  LLAATAQLNGEWIGLEAADSSSLRATRIITDTRKIEAGDIFLAIVGENFDGHSFVASAVE 77

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTS 124
           +GA A +VS   S          N P L VD+TR      A+    +HP   ++A+TG+S
Sbjct: 78  KGAIATIVSQPLS--------EVNVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTGSS 129

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   ++ I  +   +S  +  T+ ++    +N    P        L          
Sbjct: 130 GKTTVKEMLRHIFAQVEAASADVQSTTLVTRGNLNNDFGVP-----MMLLELEQQHRYAV 184

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G   +    +K       N+G  H+     +      K     + L + S A
Sbjct: 185 LELGANHVGEIAYTAAMVKPDVACILNIGTAHLGEFGGRDNIAKTKA-EIYQPLTQASTA 243

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD YS ++M  A      ++  G+        K+ A++  +  T +++ +      
Sbjct: 244 VVPCDDDYSDQLMSTAKQHTDTIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFA 303

Query: 305 -------------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                        P+ GE  V NAL AA    A G+ + L+ + L +     GR      
Sbjct: 304 IEGKAPAMVSVLLPMAGEHNVSNALAAAACAYAAGVSAELIAQGLNQAKSSKGRLGRQRL 363

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDL 409
                 I   Y    NS+      +      RI+V+   G  GD    +   +G+   + 
Sbjct: 364 GQH-HIIDDTYNANPNSMRAAADVLAAQEGTRILVLGDIGELGDDAVSEHYKLGEAIANK 422

Query: 410 A 410
           A
Sbjct: 423 A 423


>gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
 gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27]
 gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma
           whipplei TW08/27]
 gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
          Length = 464

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 166/451 (36%), Gaps = 52/451 (11%)

Query: 28  RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
             IN  +  DSR+I  G IFVA  G K DGH F+ QA   GA   +V+    +       
Sbjct: 26  LPINGRLKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQSGASLAIVTRVQEI------- 78

Query: 87  RSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
             + P L+V N  + +   A       +    ++ +TG++GK++  S +  +  + G + 
Sbjct: 79  --DLPQLLVGNVTEAMHAIAGFKLCLSRDTITVIGITGSNGKTTTKSVLAYVLSKFGNTV 136

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G     +       ++   P+     L Y + +      ++  +             
Sbjct: 137 ATHGN--QNNEIGFPITVSRIEPLTKYLVLEYGAFKPGDIDCLKKIA-----------VP 183

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 + G  H++   + ++   +        LP+ S  ++  DD     +     + G
Sbjct: 184 DIAVLLSAGHAHVEKSGSLESV-CSMKAELARDLPEGSKVLLNYDDPRIARL-----SVG 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R      +        V     K +  ++ +    +    L G+ QV N L A    + 
Sbjct: 238 NRYYFGTDKRAHFRASHVETNIIKTRFIVTYQKGSVEVETKLIGKHQVSNVLAALSTLVL 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--G 382
           +G D+ +   ++ +++ + GR +++        I+  Y  +  S++  L ++  + S   
Sbjct: 298 LGFDAEVCARYISEVNPIDGRMQYIPLGDF-SIIHDAYNASFESVKCALDSLVVLGSLAK 356

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNP---RSEDPE-KIRAEIIH 434
           R I V G   D        MG++A      L    + TD N     SE     I  E+  
Sbjct: 357 RRIAVLGRIHD--------MGELAQDVYRQLVKQFLDTDINLLVIVSEKQMYLIAKELAK 408

Query: 435 GIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
           G+P        +   A     ++ +  D+++
Sbjct: 409 GVPNKEIVWFEDLETAKHEIFDLFSPGDIVL 439


>gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
          Length = 475

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 152/415 (36%), Gaps = 31/415 (7%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            E +      P+  R+ + + V+ D+R +Q G +FVA+ G + DGH ++ QA+  GA A 
Sbjct: 9   AEAVVATGGTPLG-RDWQASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQALQTGASAA 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS         A + ++ P+L+V +    L+        +    I AVTG+ GK+    
Sbjct: 68  LVSR------RPADLAASAPLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGKTGSKE 121

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +       G +    G  +              +P+ LA+     +      + +    
Sbjct: 122 MLAAALAAYGTTHASKGNLNNH----------IGAPLSLARFSRDAAFAVFE-LGMNHPE 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                 RL  ++  A   TN+   H  +    +   +AK  +F+ L P  +  +   +  
Sbjct: 171 EIRPLSRL--VRPHAALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQ 228

Query: 252 YSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           + +        A  R++  G        L    + H   +V   + G+   +     G  
Sbjct: 229 FGRLAGHAGRLAIERIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRH 288

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNS- 368
              N+L  A   +A+G+D A+ +  L ++  + GR  +   +   G    +D ++ ++  
Sbjct: 289 WAINSLGVAATLLALGLDPAIGMAALGRVTAMRGRGGQLQLSLPDGDLTLIDESYNASPP 348

Query: 369 ----LEMILKNIRTITSGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIV 415
                  +    R     R I V G   +         R +   +     D   +
Sbjct: 349 AVRAALAVFAETRPAAGARRIAVLGDMLELGATAPEAHRGLAEAVVAAKPDAVFL 403


>gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
 gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
          Length = 453

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 148/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISVVSTDSRQIPAEALFVALVGERFDAHDFASQAVIGGAVALLVERE-------- 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 71  -LDADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  +            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLRAGAVAIVNLESHGGDLWKTDLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSTTDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  +   ++ R
Sbjct: 296 EMGASLAEIRHGLAHLAKVKGRVDLTHLRQDITLIDDSYNASVPAMKAAVDLLGGFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A   +   ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFSFEFVLT 390


>gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 465

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 168/479 (35%), Gaps = 45/479 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           D+ +KD  +L   L        +  I  +S+DSR I+ G  FV +VGNK D H ++  A 
Sbjct: 2   DITFKDLIKLWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAF 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G +A VVS  Y+       +    P  VV +T       A          ++AVTG+ 
Sbjct: 62  DLGIQAAVVSEKYN-----GLVPIGLPHWVVPDTLYAYQQIALLHRRNLNLPVVAVTGSV 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ I    G      G         ++N +  P  +     LS   +     
Sbjct: 117 GKTTTRELIRAILSPLGEIVSSRGN--------ENNDIGVPKTL-----LSGSETDAAFV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G         +      TN+G+ HI    +++    AK  +   L P     
Sbjct: 164 LEMGMRGFGQITRLSRVAEPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVI 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301
           I + D    K ++++      RV   G+   ++            +     +    +   
Sbjct: 224 IPFGDYILEKALLEKWSGRIVRVEIEGFSLNWLDCNNEHFAFQDIEPDYISQIDMQNNFI 283

Query: 302 ------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F  PL G     N L+A  +   +G+    + +    + +   R         G
Sbjct: 284 LFEGRKFKLPLEGRHNAMNFLLALTVATELGLSIKKLDQLKINMPIGRNRL-----VDCG 338

Query: 356 GRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
             + +D  Y  +  S+   L+ + +   GR   V G     G         + K A++L 
Sbjct: 339 QYLVLDETYNASPESVIASLELLVS-KPGRHFAVLGTMLELGSESILLHQKVLKKAIELG 397

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +        E+   I+  I   +P      N  +A  + +  L+  D +++  KG
Sbjct: 398 LTGIVFVSC---GEESNIIKKTIKE-LPNHDVVSNPKDAAMSLLPWLSPGDNILI--KG 450


>gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
 gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
          Length = 422

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 144/393 (36%), Gaps = 36/393 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S+D+R I+   IF A+ G+  +G+ +   AI QGA  +V+             + + 
Sbjct: 11  TGISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEE--------QFKKDD 62

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  + L   AS         I+++TG++GK++    +  +  +   +   +G  
Sbjct: 63  RYILVDDVLQTLQELASFHRNYLGIPIISLTGSNGKTTTKELINAVLTKGYKTVATVGNL 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L    S      +  V + A+  G  +   +  +   G  T
Sbjct: 123 NNH----------IGVPLTLL---SMSKDTELGIVEMGANHIGEIEMLCNIAQPDYGYIT 169

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++   +++     K  L++ L   +    + ++DA   ++ K           +
Sbjct: 170 NFGKAHLEGFGSEEGVVIGKSELYKHLKSHDKIVFVNSNDAKQVDLTK----------GM 219

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 +    V          + +   +      L G +   N   A  +     I   
Sbjct: 220 KTFTFGLKQSDVWVSFKNVNPLVEMNLDNLTIKSNLIGVYNSNNIAAAVAIGRYFKISDK 279

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++E +E       R + +  ++    +   Y    +S+++ L+N++ +       + G 
Sbjct: 280 HIVEAVENYVPSNNRSQIIKKDNL-TILLDAYNANPSSMKVALENLQALNDTPKYAILGD 338

Query: 391 G---GDRDQGKRPIMGKIALD-LADIAIVTDDN 419
               G   + +   + K+A     D  ++  +N
Sbjct: 339 MFELGASAKKEHMSIAKLAASIHLDGVLLVGEN 371


>gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
 gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 446

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 141/409 (34%), Gaps = 36/409 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL +           ++    +   +     VS+D+R IQ   +F+A+ G   D + FI
Sbjct: 2   MKLSE---------AAKIVNADLTGEDTVFENVSTDTRTIQPDSLFIALRGPNFDANDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  QGA   VV+           +++  P++ V +T + L   A     + P   + V
Sbjct: 53  AKAEEQGAVGAVVNR---------VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVV 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  + +  + ++ G         +             P               
Sbjct: 104 TGSCGKTTTRALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPD-------------H 150

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G   +     K      TN G  H++   + +    AK  +FE  L  
Sbjct: 151 HYALLELGANHPGEITYLTGLAKPSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEG-LSS 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+I  DD +++   + AH+       +      +          +    + +     
Sbjct: 210 DGTAVINNDDHFAEFWRRLAHSRRIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   PL G   V NAL AA    A  + +  +   LE +  V GR            I  
Sbjct: 270 EIQLPLIGVHNVANALAAAAAAYAQQLSTDAIKAGLESVVPVKGRLVEQKGYRGAIIIDD 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
            Y     S+   +  +     G  ++V G     G   +     +GK A
Sbjct: 330 SYNANPLSVSAAIAVLAK-RPGHSVLVLGDMLELGQGAEQFHQEIGKRA 377


>gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 456

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/473 (14%), Positives = 150/473 (31%), Gaps = 44/473 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++      E          +W +  I  V  DSR I++G +F+ +V    DGH ++
Sbjct: 3   MQLAEVARALNIEA-------KEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +       +D S  I  +  +L V +T   L         K    ++A+
Sbjct: 55  EAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++       +              +  +       + +  P             
Sbjct: 110 TGSNGKTTTKDMTAAVLATQFNVHKTFANFN--NEIGVPMTILSMEPNT----------- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +    +G     L  +     +   +  +        + +           L +
Sbjct: 157 EVLVVEMGMDRYG-QLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +I  D+       K                  +    + +   K    ++    + 
Sbjct: 216 DGELVINGDEPLLTTKAKEVSQEVL--TFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEV 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF   + G + V+NAL A  +     I    + + L    +   R E++   +    +  
Sbjct: 273 DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSD 332

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIV 415
            Y     +++ +L     + + G+ I+V G     G++       + +    D  D   +
Sbjct: 333 VYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSDLAQAINPDRIDSVYL 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLVV 464
                  E    +  ++            + + + T    L       D++++
Sbjct: 393 C-----GELMGYLAEKLREKFDETQIHHYQKDDLLTLTSDLKNELMPDDIVLL 440


>gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 140/383 (36%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +T   N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------STGEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVRARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G                
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETDALAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A            L  +  A+  ADDAY+      A        +
Sbjct: 188 NNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDFA 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +   G+      V  + +  ++ I       D      GE    NAL A    +A G+  
Sbjct: 247 LHGLGRDTPA-AVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A V   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1342]
          Length = 474

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 169/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVINEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++   +       +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYVPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 470

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 154/460 (33%), Gaps = 32/460 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                +  +  +  +++D+R I  G +FVAI G + DG+ F   A+  GA A++ +   +
Sbjct: 15  GTISTEPADSLVTSIATDNRTISGGELFVAIAGERVDGNRFAQAALDAGAVAVLTADPAA 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                A       ++ VD+    L   A   + +  K       V G +G     +    
Sbjct: 75  ACATGAAPE---RVIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGVTGSVGKTTTKDL 131

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G     I P  + ++           P+ +        S     + + A   G  
Sbjct: 132 LAHLLGQRGPIIAPPGSFNNELGM-------PLTVL---RADESTSTLVLEMGADHIGNL 181

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            +    +         + R H+      +    AK  L E    +    ++  DD   ++
Sbjct: 182 AYLTGIVAPDVSVVLAVARAHLGEFGGIENVARAKSELVEG-TREGGVVVLNYDDERVRD 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYN 314
           + K A        + G     +    V      +    +     +      L G   V N
Sbjct: 241 MAKLAPGKVVYFSASGACRDGVWASDVTLNKTGQASFILHYGQSESRVELKLIGAHHVAN 300

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           AL AA + +  GI+       L + +   P R +    N     I   Y    +S++  L
Sbjct: 301 ALAAATVALVCGIELDDCARLLTEANAGSPHRMDVWERNGT-TIIDDSYNANPDSMKAGL 359

Query: 374 KNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKI 428
             +  + T  R I V G     G+  + +   +G++   L  D  I          P  +
Sbjct: 360 TALAHLGTHRRKIAVLGTMLELGEESEAEHAHIGELVAQLGIDTLIAVGP---GLSPTIL 416

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            A    G     E  N  EA +    +L + DV+++  KG
Sbjct: 417 TA--RQGGVEVHETLNVAEATQLLTGLLAEGDVVLL--KG 452


>gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 448

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 153/440 (34%), Gaps = 47/440 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   ++     +  +  +   S +S++I    +F+ + G++ DGH F
Sbjct: 1   MNL------WLSEIAKAINGELRNFSSDVLVKNFSINSKNIGKDTLFIPLKGSRFDGHDF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENIL 118
           + +A+  GA + +    +             P + V ++   L   A     K +   ++
Sbjct: 55  VKEALQNGAISFISQKDFEDI--------KVPYIKVQDSLLALQSLACYARRKLNDLKVV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG+ GK+S   ++  +  R   +    G  +                           
Sbjct: 107 GVTGSVGKTSTKEYIFNVLSRKYKAFKNQGNFNNHIGLPISILNMPDD------------ 154

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +  S+ G         K   G  TN+G  HI+  +++   F AK  + + + 
Sbjct: 155 -TQVAVFEMGMSNFGEISKLSQIAKPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMP 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   +D  +    +         +      +  ++++        Q   S E  
Sbjct: 214 ESGILIINSDNDILNLHKKELKRKVVTIGIENESNFRAQNVQR-------HQNGFSFEVG 266

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            + +         +YN+L A  +   + +D  LV E + +   +  RFE +   S    +
Sbjct: 267 GYTYFIESFNFHDIYNSLFAIAVGTILEVDRQLVKEAIRQKERLKRRFEVIKKGSI-TVV 325

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
              Y  +++S+   + +I     G+ I+V G     G+  + +   +G+ I     D+ I
Sbjct: 326 DDTYNASTHSMLSAIDSICEF-EGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVI 384

Query: 415 VTDDNPRSEDPEKIRAEIIH 434
            T      +D   I  E   
Sbjct: 385 CT-----GKDAIYIFDEAKK 399


>gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 452

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 144/398 (36%), Gaps = 29/398 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +L  Q         +  I  VS +S  +    +FVAIV    DGH FIP AIA GA
Sbjct: 3   KSLKQLATQAG-LEYIGEDVSIQTVSINSNEVNQDALFVAIV-ANRDGHEFIPSAIANGA 60

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A++VS    +         N P +V +NT K L   A          I+++TG+ GK++
Sbjct: 61  KALLVSKKQDI---------NIPQVVCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKTT 111

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  +    G                    L TP  +  A             +   
Sbjct: 112 VKEMIVTL--LGGKKVHFTQGNFNNYLGVPMTVLETPQDVDFA------------VIETG 157

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +   + I+      TN+G  H++  +T       K  L + L        I  
Sbjct: 158 TSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDG--VCIVN 215

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D           +      S+  Q   I +           V I +  K++ +  P  G
Sbjct: 216 LDDERIPAYADKLDCKKITCSMSNQDADIIILDYQVTPELYDVKIRIFNKEYSYQLPNIG 275

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N+++A    +A G++    L++ + +    GRF     N +   +   Y  ++ +
Sbjct: 276 KHNLSNSMLAIASVVAAGLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGA 335

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK 404
           ++  + ++      ++I +      GD  +     MG+
Sbjct: 336 VQAAIADLAEFDGKKVIAITSMRELGDEGENYHRKMGQ 373


>gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
 gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
          Length = 453

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 460

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 133/407 (32%), Gaps = 29/407 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   I +    +   +     +  + ++N V  D+R +  G +F+ + G   DGH FI
Sbjct: 1   MKMT--IGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +        D +  +    P LVVD+        +     K    ++AV
Sbjct: 58  ENAIKGGAVATLW-----ASDHTNRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   SG  +      +  +       +                  
Sbjct: 113 TGSNGKTTTKDMIASV--LSGEFNVTKTYDNFNNEIGVPYTILQMESNT----------- 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G        ++      T +G  HI++  T+    +AKM +   L   
Sbjct: 160 DFLVVEMGMDRPGQLDFLSKLVEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKAD 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D     +++RA       ++ G            +              D 
Sbjct: 220 GYFIY----DGDEPLLIERAKQVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNLWPDK 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G++ V NAL A  +     I    +++ L    +   R E++  N     +  
Sbjct: 276 KVTIPMMGDYNVNNALAAITVGKLFQIPQIEIIQKLSHFDLTKNRTEWLTGNKGEKILSD 335

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG 403
            Y     +   +L         GR IVV G     GD+       + 
Sbjct: 336 VYNSNPTAAREVLTAFSQTDVMGRRIVVLGDMLELGDKSSQMHASLA 382


>gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 464

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 142/419 (33%), Gaps = 26/419 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +  +I +    +I  L    ++  + +  I  V  DSR +  G +++ I G   +GH ++
Sbjct: 1   MSKMIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGVNNNGHAYV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA+A++                   +++V++T   L   A     +    ++ +
Sbjct: 61  QQAIEHGAKAVLWERK------EQNPPHEVVVILVEDTTVALQQLAKAYRDQLNLKVVGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +  +  ++   +G  +               P+ L    S   + 
Sbjct: 115 TGSNGKTSTKDILASVLAKHFITQKTLGNFN----------NEIGVPLTLL---SLSENC 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +   +        + ++      +N+G  H++   T +    AK+ + E L   
Sbjct: 162 EAAVVEMGMENLNELSFLTNIVRPDIAIISNVGTAHLENLGTMENIAKAKLEIVEGLNEH 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                           +++      ++ + G +     +        +  +  S+   D+
Sbjct: 222 GLLIYNGDQQLLRDAAVEKQIPGYIKIRTFGKEAHNDVIVSH-VHQLEDGLRFSINEDDW 280

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   + G+ Q  NA  A     A+G+    + E    +     R E V  N     +  
Sbjct: 281 VYHLDMIGKHQAMNATAAWIAAKALGLSEEEIAEGFASVEKTGLRNELVKVNQC-LILND 339

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     S    +  +        + V G     G+        +GK         ++T
Sbjct: 340 SYKSNPQSALAAVDTMEEFDIPYKLAVLGDMLELGETSDMIHYTLGKDISRYHIQEVLT 398


>gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 442

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 152/405 (37%), Gaps = 40/405 (9%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q+     Q   + +  VS DSR +++G +FVA+V    DGH ++ QA+ +GA A++V 
Sbjct: 8   IGQILNATTQIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLVD 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             +        I S  P ++V +T   L         +    ++A+TG++GK++      
Sbjct: 67  DRH-------QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMA- 118

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                    S  +G         ++       P+ L           V  V +     G 
Sbjct: 119 ---------SAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDD---TEVLVVELGMDRPGQ 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                + +       T +G  HI++ +T++    AK+ + + L  + +  + Y +   + 
Sbjct: 167 LTTLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLVPYDEPLLTN 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +K+                    + +  I++    TI    ++  F  PL G + + N
Sbjct: 227 AQVKQ--------------NVQTFGQDIKDINSSSSKTI-FTYQNTRFAIPLLGRYNIMN 271

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A    I + I+     E L+   +   R E + T+     I   Y     ++  +L 
Sbjct: 272 ALAAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLA 331

Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415
            ++ I +    VV G     G++       + + +     D   +
Sbjct: 332 TLKIIPATHKYVVLGDMLELGEQAASLHACLAETVINANVDGVYL 376


>gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 441

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 148/436 (33%), Gaps = 39/436 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +  DSR + AG +F+ + G K DG+ F+ +A+++GA  +    A+           + 
Sbjct: 17  RNIVIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFD----------DQ 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            +L VD+T + L   A  +  K    N + +TG++GK++          + G      G 
Sbjct: 67  RVLRVDDTNEILIEAAKSILSKSKLSNRIGITGSNGKTTTKEISSFFLSKLGRVFKTAGN 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +T              P+ L +    L S          S+ G  +  +  ++      
Sbjct: 127 LNTE----------IGLPLSLLENRRELFSAQYGVFEFGTSTKGDIEKLVGIVQPDIAVL 176

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+   +        K+ +F+    + S A++   D     + + +      VL 
Sbjct: 177 LNVGSAHVGNFKDIDELLQEKLSIFKS--KRLSRAVLGGCDE---RLREFSKGLPVEVLL 231

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G +     +           +    +G  F  L  +    Q+ +   A  +   +G++ 
Sbjct: 232 FGKEDVDFSIVDFAYDKGDTMLHFFCDGDRFVRLRGIWSYGQLLDLGAAYLVARLVGVEE 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387
             V  +  KL     RF               Y  +  S E  + +I  + S R I V  
Sbjct: 292 PSVFLNDYKLPFS-DRFTVSILKGITVISDF-YNSSLESWESAILSIEKLRSSRKIAVAG 349

Query: 388 -FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                G  ++     +G++     +  + T D         I A     +   +   +  
Sbjct: 350 SILEQGREEKRTHERLGELLSKFDETVLFTRD-------MAINAA-SKNVKPALVSDSEE 401

Query: 447 EAIRTAIEMLNKQDVL 462
           E        +   D++
Sbjct: 402 EIAAWLHRNVRSGDLV 417


>gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0630]
          Length = 474

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 457

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441


>gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 459

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 141/405 (34%), Gaps = 32/405 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I ++  E+   L   I   ++ + KI  +S DSR I+   +++ IVG K DG +FI + 
Sbjct: 1   MIERNLEEIAKMLGGEISNPKYSKTKIKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA A ++      +++      + P + V +T+K L   A     +    I+A+TG+
Sbjct: 61  ENSGAVAFLID-----ENYKIPKSISIPFVKVSDTKKALQDLARAYRDELDIKIIAITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++  + +  +           G  +               P+ L           V 
Sbjct: 116 NGKTTSKNLIHSVLSEKYKVEKTQGNLN----------NEIGVPLTLLDFSDKTQIGVVE 165

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             + +     L  +     K      TN+G  H+   ++++    AK+ + E L    + 
Sbjct: 166 MGTEDFGEISLLTNIA---KPDMAMITNIGDAHLLKLKSREGIAKAKLEILEGLKADGTF 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                      E++K+   +          GK   +                  ++ D+ 
Sbjct: 223 IYN-----GDDEILKKVLPSYTIKQKTISYGKEDGVNFKVYPKEFSSTYTKFSYENEDYK 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G  QVYN  +A  +     +    +   L K+     R E       G  I  D  
Sbjct: 278 VPLLGTHQVYNGALAVLIGKLFNLSYEEIDNGLAKVSNNANRNEL--IERNGFDILDDAY 335

Query: 364 HTSNSLEMILKNIRTITSG--RIIVVFGCG---GDRDQGKRPIMG 403
            ++         +     G    IVV G     GD ++      G
Sbjct: 336 KSNPQSLKQGLELAGFLDGYLNKIVVLGDMLELGDGEKNLHYKSG 380


>gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
 gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
          Length = 453

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 152/414 (36%), Gaps = 31/414 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+            + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGQVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMTQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +++      GD        +G+ A       ++T          K+ +++  G
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT-----YGKYAKVISDLCQG 404


>gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile 630]
 gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Clostridium
           difficile]
          Length = 457

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/458 (16%), Positives = 157/458 (34%), Gaps = 29/458 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L     +    + +  ++++  DSR   A   FVAIVG   DGH F+  A   G +  + 
Sbjct: 11  LATNGKLIYGDYNDC-VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI- 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +  +      S+  ++ V +T   L   +     K     + VTG+ GK++    +
Sbjct: 69  ---KNESNGIKLESSDINLIDVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMI 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                            +               P+ L              + +  S   
Sbjct: 126 YSAISAKLNILKNEKNLNNHFGV----------PLTLFNLNKE---HECAVIEMGMSGFN 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++ +D +       +N+G  H++   +Q+    A          + +  I+  DD + 
Sbjct: 173 EIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKA-KMEITSNFDETNTLIVNGDDKFL 231

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             + ++ H    +          ++ +      +       + GK  +   P  GE  +Y
Sbjct: 232 STLKEKEHVYKLKTFGFNK-NNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIY 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A  + + + I    + + L+       R + +        I   Y  + +S++  L
Sbjct: 291 NAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLDIIKNEKL-TIINDSYNASPDSMDAAL 349

Query: 374 KNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           K +      R+ +   +   G   + G R ++GK +++  DI I   +N      E    
Sbjct: 350 KILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVFIGEE--AK 406

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++           NR +      E++   D ++V  KG
Sbjct: 407 QLGFNSANIYHFENREDVFNKLNELVKTGDTILV--KG 442


>gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
 gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
          Length = 450

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 152/445 (34%), Gaps = 41/445 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NE+  +S+ I+ G +F+A+ GNK DGH +I  AI QGA A++VS    + D +       
Sbjct: 23  NEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDAINQGASAVIVSKQVDIADKNK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  K L   A           +A+TG+ GK+S    ++ + Q   L+    G  
Sbjct: 76  -IILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKTSTKEALKTLLQHEALTFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNHLGL-------------LINLASMPDDTEFAIFELGMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A      E   K+  A+I +D      ++          +  
Sbjct: 182 NISEAHLEFFNSLEDIAEA-KCEIFESFDKDGIAVINSDSNCYDRILSILKKLSIENIHN 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +     L        +  +   +     +   P   +    N      +   +  D  
Sbjct: 241 FDKSSSAELILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENYASILLIIFLLNQDLN 300

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
               +L+ + +  GR   +        I   Y  +  S++  L+ ++ + +     + G 
Sbjct: 301 KAAGYLKNIPMTKGR-GKIINIGNSRIICDYYNASPTSMKAALEYLKQMPATNKTAIIGE 359

Query: 391 G----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEKG 443
                 + ++  + ++  I         +   N +      PEKI       I   I   
Sbjct: 360 MLELGQNSERLHKELVPYILDLGCSKVFLVGANTKYIYDALPEKITKAYFKNIDELIAST 419

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           N         ++    +++++  KG
Sbjct: 420 N---------DLFKNDELILI--KG 433


>gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 503

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 156/397 (39%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A+GA  ++V               + P +VVDNT   L+  A+ +       +LA+
Sbjct: 55  AEAVARGASGVLVER--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G      G T   +   ++N +  P  +  A   + ++  
Sbjct: 107 TGSNGKTSVKALLLSILTEAG---RVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  +  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
              A+I ADDA+     ++  +   +   V   G      I  +++       Q T+   
Sbjct: 218 GGVAVINADDAFGMWFEQQLQSQPVQGRRVLRFGVQASAEITARQLRLHPGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L +   V GR +   T   G 
Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARAVAGR-QIAQTLPNGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAQGEGWLVLGDMRE 373


>gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 463

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 148/441 (33%), Gaps = 38/441 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             ++ +S+D+R ++    F+A+ G + DGH FI  A+ +GA  +VV    S +   A   
Sbjct: 23  LPVDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKGAAVVVV---ASGRGEGAVRA 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  ++ VD+T   L   A     ++   +  +TG++GK+S    +  I +         
Sbjct: 80  GSVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTKELLAAILEHRHGILKNR 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +  +       L T  P           +     + +  +  G     ++      G
Sbjct: 140 GNLN--NQIGVPLTLLTMDP-----------THEAAVIEMGINVPGEMARLVEIAGPTLG 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+   H++   +       K RL++  L  E  A++  DD   +   KR        
Sbjct: 187 LITNIQPAHLEGLGSLDGILKEKGRLWDA-LDAEGIAVVNLDDQRLRAYSKRLAARTVTC 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +     + ++ +  +  +  + +  +    +    G   V NAL AA    A+G 
Sbjct: 246 SVRDPEAGVRVVGEIESDEHSTRFRMVLGTETVPVVLSAVGIHYVRNALAAAAAAWAMGE 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIV 386
               +   L     V  R +          I   Y     S+   ++    +  G+  I 
Sbjct: 306 PGEAISAGLAAYRPVGQRMQIRHMEDGRVLIDDTYNANPESMLAAVRAALAVCRGKPCIA 365

Query: 387 VFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEK 442
           V G     G         +G+    +    ++T      E   +I    +  G+      
Sbjct: 366 VLGEMRELGADSAALHRELGRRIGAMGLSGLITL----GELAARIGEGAVEAGMKPA--- 418

Query: 443 GNRIEAIRTAIEMLNKQDVLV 463
                    A       D +V
Sbjct: 419 ---------ACRHAKSHDQVV 430


>gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 146

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 25/158 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +   + +I  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLIK-------ETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            +  + +TGT+GK++ +  +++I    G  +  +G   
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLMGNNG 140


>gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 470

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 145/393 (36%), Gaps = 20/393 (5%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                      I+ V +D+R I+ G +FVA+ G + D +  + +A A+GA A++  +  +
Sbjct: 16  GATLAGDGSTSIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEAFAKGAAAVLCHAGLT 75

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
              + A      P + V+N++  L+  A+    +    ++AVTG++GK++V   +  I  
Sbjct: 76  ASAYPA----GLPRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKTTVTQMIASILH 131

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
                   +      ++           P+ L +  +      +  V +  +  G     
Sbjct: 132 AHAPDGAALATVGNFNNDI-------GVPLTLLRMRAQHR---IAVVELGMNHPGEIAVL 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +       N  R+H+++  T +A            LP+   A+  ADD Y+    +
Sbjct: 182 AAMAQPTVALVNNAQREHLEFMHTIEAVARENG-SVLSSLPETGTAVFPADDDYAPLWRE 240

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            +        + G  G    ++         QV       +  +   + G   V N+L A
Sbjct: 241 LSAGRVVATFARGDAGADFVVRSASWQDGAWQVVAGTPQGELRYRLAIAGRHNVKNSLAA 300

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           A   +A G+ +  V   LE    V GR    +          +   Y    +S+   +  
Sbjct: 301 AACALAAGVPAITVARGLEAFVPVKGRCRAMQVRQGALDFTLVDDTYNANPDSMRAAIDV 360

Query: 376 IRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
           +  +   R++V+   G  G++        G+ A
Sbjct: 361 LADLPGPRLLVMGDMGEVGEQGPAFHAEAGRYA 393


>gi|149007559|ref|ZP_01831194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
 gi|147760918|gb|EDK67888.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
          Length = 353

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 67/277 (24%), Positives = 108/277 (38%), Gaps = 20/277 (7%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +S DSR +    +F A  G       ++  
Sbjct: 9   DILKKDGLFREIIDQ-GHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK-KEYLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAV 120
           AI QG    V    Y +         + P+++V++ +K +SL A   YG   E +  LA 
Sbjct: 66  AITQGLAWYVAEKDYEV---------DIPVIIVNDIKKAMSLIAMEFYGNPQEKLKLLAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TGT GK++   F   I  +    +      T+        + LTTP  I L   ++    
Sbjct: 117 TGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQAVQ 176

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
              TH+ +E SS     HR+ G+    G F N+  DHI      +          + LL 
Sbjct: 177 NDRTHLIMEVSSQAYLVHRVYGLTFDVGVFLNITPDHIGP---IEHPSFEDYFYHKRLLM 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           + S A+I   D     V+K                  
Sbjct: 234 ENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQ 270


>gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
 gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
          Length = 457

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 164/467 (35%), Gaps = 32/467 (6%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  +L  ++  +  +         + R+   V  DSR ++  ++FVAI G   + H FI
Sbjct: 1   MK--NLTLENIAKACHGTYHGDESKKSREAAGVVIDSRKVEKDYLFVAIDGENVNAHKFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I +GA  +V               ++ P ++V++T + L   A          ++ +
Sbjct: 59  PDTIEKGALCVVSHEDLG--------DTDFPYILVESTGQALLDIAKLYRDSFDVTVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  +       +G  +          +T        + +      
Sbjct: 111 TGSVGKTSTKEMIASVVSQKYKVHKTLGNFN----NEWGLPITIFEMDESHEVVILEMGV 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                    SS                  TN+G  H+++ +T++     K ++ +++   
Sbjct: 167 NHFGEMRRLSSVA---------SPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNG 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S  +   DD  SK    +         +   Q     +  +        + +  +G+ F
Sbjct: 218 GSIILNGDDDLLSKMGPVKGVTPVLFGTNEDCQCYASGIVPMGLKGTACTIHL-PDGEAF 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D L P PG   V NAL  A +  A+G+ +  +   +E    +PGR   + T S       
Sbjct: 277 DCLIPTPGAHMVSNALAGAAVGAALGLTADEIKAGIEAHTTLPGRNNIISTGSLMILDDC 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S +  +  +  +  GR + V    G  G+ ++     +G+ A       +   
Sbjct: 337 -YNANPVSTKAAIDVL-DMAIGRKVAVLGNMGELGNNEKELHREVGEYAAKHGIDVVCGI 394

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   E  E            F  K + +  +   I    + D ++V
Sbjct: 395 GDLAKEITESAAKGASTETHWFAAKQDFLAEMHHII---KEGDNVLV 438


>gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL N1-067]
          Length = 316

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+  + +    L    SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+
Sbjct: 1   MNLKKTVGEVVAML--DSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A                 ++ P+++V++T   L   A +   +    ++A+
Sbjct: 59  GQAREMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAMKYIQEVRPKVIAI 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I + S    +  G  +          LT P    +A     ++ +
Sbjct: 113 TGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHR 171

Query: 181 G 181
            
Sbjct: 172 H 172


>gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
 gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
          Length = 474

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 171/481 (35%), Gaps = 53/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--------- 410
            Y     ++ ++L +   +   G+ I V G   +       +   +A  LA         
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 411 ---DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              ++A + D    +  P  I            EK   IEA++  +     +D++V+  K
Sbjct: 409 YGSEMAYLADKLQETYTPANI------HSFKKEEKNELIEAVKKVL---QPEDMVVL--K 457

Query: 468 G 468
           G
Sbjct: 458 G 458


>gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 457

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 171/481 (35%), Gaps = 53/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--------- 410
            Y     ++ ++L +   +   G+ I V G   +       +   +A  LA         
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391

Query: 411 ---DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
              ++A + D    +  P  I            EK   IEA++  +     +D++V+  K
Sbjct: 392 YGSEMAYLADKLQETYTPANI------HSFKKEEKNELIEAVKKVL---QPEDMVVL--K 440

Query: 468 G 468
           G
Sbjct: 441 G 441


>gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL S4-171]
          Length = 309

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+  + +    L    SI    +R+  I  V  D+R I+ G +FV  VGN  DGH F+
Sbjct: 1   MNLKKTVGEVVAML--DSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA   GA A                 ++ P+++V++T   L   A +   +    ++A+
Sbjct: 59  GQAREMGAVATFWQKNVPNP------PTDFPVILVEDTLLALQELAMKYIQEVRPKVIAI 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I + S    +  G  +          LT P    +A     ++ +
Sbjct: 113 TGSNGKTTTKDIMAAIVETSYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHR 171

Query: 181 G 181
            
Sbjct: 172 H 172


>gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis TXDOH]
          Length = 468

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 140/383 (36%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +T   N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------STGEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGERARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G                
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETDALAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A            L  +  A+  ADDAY+      A        +
Sbjct: 188 NNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYAGIWRVAATGNRLVDFA 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +   G+      V  + +  ++ I       D      GE    NAL A    +A G+  
Sbjct: 247 LHGLGRDTPA-AVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A V   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
 gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
          Length = 452

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/466 (18%), Positives = 148/466 (31%), Gaps = 43/466 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+++      +             E  ++ VS+D+R +  G +FVA+ G + DGH +I
Sbjct: 1   MTLKEIAAAIGAD----------GTFEGAVDCVSTDTRALPPGCLFVALEGERFDGHDYI 50

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA   V                  P++ V NT++ L   A     +   + + +
Sbjct: 51  TAALRGGAACAVAHERRDYGAG--------PVMYVKNTQRALMDLARAYRARFDIHCVGI 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +         +    G  +      +     T                
Sbjct: 103 TGSVGKTTTKDMIAAAVSAGFQTLKTEGNLNNEIGLPKTLLGLT-------------RGH 149

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G      D  +   G  TN+G  HI+   +++    AK+ L + L   
Sbjct: 150 EAAVVEMGMQGFGEIAALADVARPTLGVITNIGVSHIEQLGSRENIMKAKLELADALPDG 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   DD   K  + R      R   V      +H   +     +   T+   G   
Sbjct: 210 APLFLCGDDDLLKKVSIPR---LDVRFYGVENPACALHAADIREADAQTAFTLQYPGGQV 266

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P  G   V NA+ A G+ +A+GI +      L        R   V   S       
Sbjct: 267 GATIPCIGLHNVRNAVAACGVGMALGIPAEKCAAALAAYVPSGMRQRVVHWGSVTVVEDC 326

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y  + +S+   L  +  +   GR I V G     G   Q     +G+ A       ++ 
Sbjct: 327 -YNASPDSMRAALTTLSAMRCAGRRIAVLGGMLELGAYSQAAHREVGRAAAGAGVDLLL- 384

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                  D          G        ++ + +      L   D++
Sbjct: 385 ---AYGGDACYYSQGAKEGGVESETFSDKADLLARLRGALGPGDIV 427


>gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arsenophonus nasoniae]
          Length = 452

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 169/450 (37%), Gaps = 46/450 (10%)

Query: 31  NEVSSDSRH--IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           N V+++SR   I+   +F+A+ G   DGH F  QA   GA A++V    ++         
Sbjct: 23  NAVTTNSRQRPIK--GLFIALKGKHFDGHHFAEQATIAGASALLVERPLTI--------- 71

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V++TR  +   A+ +  +    ++ +TG+SGK+SV   V  I  +SG++ F  G
Sbjct: 72  HCPQVIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVKEMVAAILTQSGMTLFTEG 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +               P+ L +  +         + + A+  G   +  + ++  +  
Sbjct: 132 NFN----------NDIGVPLTLFRLTAE---HEYAVIEMGANHIGEIAYTTNMVRPDSVL 178

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA-DDAYSKEVMKRAHNAGCRV 267
             NL   H++   +      AK  +F+ L  + +  I  A  D  + +   +      R 
Sbjct: 179 VNNLFAAHLEGFGSLTGVAKAKGEIFQGLAEQGTAVINLASHDWKNWQSYFKQQQTLWRF 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                Q    + + +       +  +            LPG+  + NAL A+ L +++G 
Sbjct: 239 SLTKQQQADFYAENIAIKSTGSEFELHTPIGVASIFLALPGKHNIANALAASALAMSVGA 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               V   L  +  V GR   +        +   Y   + S+      +  +   RI+VV
Sbjct: 299 TLEQVSLGLAHVQPVSGRLYPIYLAPGKLILDDTYNANTGSMIAAADVLSQMPGYRILVV 358

Query: 388 --FGCGGDRDQGKRPIMG---------KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
              G  GD+ +     +G         ++        I++  +   E     +  I   I
Sbjct: 359 GDMGELGDKTEKCHQEVGVATRQMKLDRVLSVGQQSVIISQQSGCGEHFASKKELIAKLI 418

Query: 437 P--------GFIEKGNRIEAIRTAIEMLNK 458
           P          + KG+R  A+   +  L +
Sbjct: 419 PLIKEHETVSVLVKGSRSTAMEEVVHALQE 448


>gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
 gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
          Length = 427

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 144/384 (37%), Gaps = 25/384 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ D+R +  G +FVA+ G + DGH F   AIA GA A++VS    ++          P 
Sbjct: 1   MTIDTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLLVEA---------PQ 51

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   V  I ++ G   +  G  + 
Sbjct: 52  LVVKDTRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNN 111

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      TP                   + + A+  G   +  D  +  +    NL
Sbjct: 112 DIGVPLTLLRLTPE-------------YDFAVIELGANHIGEIAYTTDLSRPESALVNNL 158

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++   +      AK  +F  L    +  I    + +        +    R    G 
Sbjct: 159 AAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLHNKRVWRFSPHGA 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +        V         T+           PLPG   + NAL AA L +++G   A V
Sbjct: 219 EDIDFFASDVRITPKTTYFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVGASLAAV 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGC 390
            + L +L  VPGR   +  ++    +   Y     S+    + +  +   R++VV   G 
Sbjct: 279 RQGLTQLQAVPGRLFPIELSAGKLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMGE 338

Query: 391 GGDRDQGKRPIMGKIALD-LADIA 413
            G+        +G  A     D  
Sbjct: 339 LGETAVDCHRQVGDAAKQAGVDKV 362


>gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
 gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
          Length = 457

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 157/458 (34%), Gaps = 29/458 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L     +    + +  ++++  DSR   A   FVAIVG   DGH F+  A   G +  + 
Sbjct: 11  LATNGKLIYGDYNDC-VSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSGCKTFI- 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +  +      S+  ++ V +T   L   +     K     + VTG+ GK++    +
Sbjct: 69  ---KNESNGIKLESSDINLIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVGKTTTRDMI 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                            +               P+ L              + +  S   
Sbjct: 126 YSAISAKLNILKNEKNLNNHFGV----------PLTLFNLSKE---HECAVIEMGMSGFN 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++ +D +       +N+G  H++   +Q+    A          + +  I+  DD + 
Sbjct: 173 EIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKA-KMEITSNFDEANTLIVNGDDKFL 231

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             + ++ H    +          I+ +      +       + GK  +   P  GE  +Y
Sbjct: 232 STLKEKEHVYKLKTFGFNK-NNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIY 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A  + + + I    + + L+       R + +        I   Y  + +S++  L
Sbjct: 291 NAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLDIIKNEKL-TIINDSYNASPDSMDAAL 349

Query: 374 KNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           K +      R+ +   +   G   + G R ++GK +++  DI I   +N      E    
Sbjct: 350 KILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVFIGEE--AK 406

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++           NR +      E++   D ++V  KG
Sbjct: 407 QLGFNSANIYHFENREDVFNKLNELVKTGDTILV--KG 442


>gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 459

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 149/405 (36%), Gaps = 32/405 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I ++  ++   L   +    +++ KI+ VS+DSR IQ   +++ +VG   DG LF+ + 
Sbjct: 1   MIERNLGQIAEMLGGSLCDPNYKDVKISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             +GA A ++   Y +++       + P + VD+T K L   A     +    ++ +TG+
Sbjct: 61  EDKGASAFLIDRDYEIKN-----NISIPYIRVDDTLKALQDLARSYRKELNVKVIGITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    + ++      +   IG          +N +  P  I     LS      + 
Sbjct: 116 NGKTTTKDLLYEVLSTKYKTQKTIGNL--------NNEIGVPKTI-----LSLNEDTEIA 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G      +         TN+G  H+   ++++    A      E L  +  
Sbjct: 163 VVELGTDKFGDISLTSNIALPDIAIITNIGDSHLHNLKSKEGILKA-KMEIVEGLSDDGI 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I   DD   K+ +         +           +K++ +        +S       + 
Sbjct: 222 FIYNGDDETMKKEIDSYKVDQKIISFGLEDDNDFVVKEIPSTP----AKVSFSHDGETYD 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            PL G   +YN      +   +G+D+  V   L K+     R         G  +  D Y
Sbjct: 278 IPLLGRHNIYNGACCLLIANILGLDTNEVKSGLVKVRPANNRS--SMIELDGFDVLDDSY 335

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG 403
                SL   L   + +      IVV G     GD++      +G
Sbjct: 336 KSNPQSLRSGLATCKLLDGYNNKIVVLGDMLELGDKEDELHYEVG 380


>gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 460

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/478 (16%), Positives = 173/478 (36%), Gaps = 51/478 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L  K   E+++        +   ++  V  DS+ I+ G +FV I+  K DGH ++ +
Sbjct: 7   LIQLHLKKLEEVVDGEG-LQESFHHLEMQGVCIDSKKIKEGNLFVPIIRVK-DGHDYVKE 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           AI  GA A +   +Y             PI+ VD+T   L   A          ++ +TG
Sbjct: 65  AIDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITG 118

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++V   +  I   +       G  ++              P+ + +          
Sbjct: 119 SNGKTTVKDIISTILSTTHRVHKTKGNFNSQ----------IGLPLTILEMKRD---TEF 165

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  ++     +      T +G+ H++   +++    AK+ + + L  +  
Sbjct: 166 LILEMGMSEKGQIRNLSQIAQPDVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEEGL 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                      + ++ R +N          +     L       ++  V   +      +
Sbjct: 226 LLYN-----GDETLLSRKNNVLVLECKSFGEKDTNDLFPTNVQLDEYGVHFKLNDSKIQY 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G+  + N +V   +     + +  + + L ++++   RF+F+   +    I   +
Sbjct: 281 DVPLHGKHNILNTIVGIAVGQFYNVPTEKIQDALRQINITHMRFQFLTAKTGFTIINDAW 340

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCGGD---------RDQGKRP------------ 400
             + +S++  ++ ++ +    + I+V G   +         R+ GK              
Sbjct: 341 NASPSSMKAAIETLQKLNAYKKKIIVIGDMLELGKAAETYHREIGKMLNQENISYVFTYG 400

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM 455
            M +I  + A     T       +  KI  E++  I      + KG+R  A+   ++ 
Sbjct: 401 EMAEIVAEEAMKTYATGQVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIVQN 458


>gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
 gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 132/408 (32%), Gaps = 33/408 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  + +   +  +R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             Y      A       +L VDNT       A     +    ++ +TG+ GK++    + 
Sbjct: 74  RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +    G         +      +      P                   + +     G 
Sbjct: 130 AMLAVRGPVLKTEANYNNEIGVPKTVLQIDPD------------HHWAAVLEMGMRGRGQ 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   +      TN+G  HI    + +             L     AI+ AD+    
Sbjct: 178 IAELARIAQPNIAVITNVGTAHIGLLGS-EQAIAEAKCELLAQLSGTGLAILNADNHRLI 236

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +R +   CR   +        L  +  +            +   F  PLPG     N
Sbjct: 237 ATAQRLNLPRCRTYGLQNGDLQGQLIDLETLV----------VEGQRFRLPLPGAHNALN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L    +   +G+D     +    L     R   +  +     +   Y     S+   L+
Sbjct: 287 FLAGLAIAQELGLDWEAFRDLSVTLPQGRAR--RIELSPDIVLLDETYNAGLESMLAALQ 344

Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDD 418
            +      R I V G     GD  +     +G+ A  L  D  ++  D
Sbjct: 345 LLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYAD 392


>gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 440

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 113/348 (32%), Gaps = 39/348 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        +    +   Q     +  V  DSR ++AG +FV + G + DGH +I
Sbjct: 1   MK--DLKTDIIANWVKGSVLGSTQ-----VQGVKVDSRAVEAGDLFVCLKGARVDGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              I +GA A++V               +   ++VD+T   L LFA           + +
Sbjct: 54  EDVIGKGAVAVLVDHKID--------NLDVCQIIVDDTMAALQLFAKAYRDTLNATFIGI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  I  R G S       +T                            
Sbjct: 106 TGSNGKTSTKDILFSILSRVGNSIATYKNQNT-------------EIGTYLNLFRMNDDT 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +     G      + I+  AG   +L   H+    + +   + KMR+F+ +  K
Sbjct: 153 EFGIFEMGLDYVGDVAVMAECIRPDAGLVMSLAPAHMMNFDSIEHIASEKMRIFDFVTHK 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +                                G     + V +  +     IS +    
Sbjct: 213 DLSFYQG-----------DFEQYRSISHGEHTFGFNEDNEWVVSDVSSNNHGISFKLDGV 261

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +   L G  Q  N      L   +GID A++ E L  + +   R E 
Sbjct: 262 AYSSNLLGNHQASNCAGVIALLSKLGIDDAVIREGLNHVALTSLRTEL 309


>gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
 gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
          Length = 474

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 18  MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFI 72

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 73  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 126

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 127 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 173 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 233 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 288

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 289 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 348

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 349 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 408

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 409 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 458


>gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 457

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 168/472 (35%), Gaps = 35/472 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL    + +  + +   + +  QW +  +  +  DSR I  G +FV + G   DGH FI
Sbjct: 1   MKLT---FWEVAQAVEASNDW-QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A G +A                    P+L V +    +   A+    K   N++AV
Sbjct: 56  ESAMANGCQAAFWGQDL------VDAPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +     ++    G  +                I L   + ++  +
Sbjct: 110 TGSNGKTTTKDLIAAVLSEKFVTYKTQGNYNNQ--------------IGLPYTILHMPDE 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +      H  +   L  +     +   +  +    +   +A          + L K
Sbjct: 156 TEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAK 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +    + +D+   + ++++               +   L+ +     K+Q +  +     
Sbjct: 216 DGSLFVPSDEPLLEPLVEKVTQQVITFG----FSQESQLQGIVTNEAKEQTSFKISDTQM 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+PG + V NAL+A G+     +  + + + L    +   R E++   +    +  
Sbjct: 272 TFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANGAEILSD 331

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L +   +   G+ I V G     G         M +     A   +  
Sbjct: 332 VYNANPTAMGLVLDSFSKMSKVGKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFL 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +   +K++           +K  + E I    ++L  +D++V+  KG
Sbjct: 392 YGSEMAYLADKLQETYAPANIHSFKKEEKNELIEAVKKVLQPEDMVVL--KG 441


>gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
          Length = 510

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/495 (16%), Positives = 167/495 (33%), Gaps = 55/495 (11%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L      +++   ++  +   +  +   V  DSR I +G +F+A+ G + DGH F   A
Sbjct: 3   ELTLAQIADIVGG-TLHDVPDPQATVTGTVEFDSREIGSGDLFLALPGARVDGHDFAATA 61

Query: 64  IAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDN--------TRKFLSLFASRLYGKH 113
           I +GA A++ +    +       +  ++  ++ +++            L   A+      
Sbjct: 62  IEKGAVAVLGARPVGVPAIVVPVSGETDNRVMALESDTDGAGAAVLTALGDLAAYCTKSL 121

Query: 114 PE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ VTG++GK+S    +  + +  G +    G  +            T      
Sbjct: 122 AADGLTVVGVTGSAGKTSTKDLIAAVLRPLGETVAPPGSFNNEIGHPWTALRAT------ 175

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                  +S     + + A   G             G   N+G  H+    +++    A 
Sbjct: 176 -------ASTKFLVLEMSARGEGHIAALAKLAPPRIGVELNVGTAHLGEFGSRE----AI 224

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQ 289
            R   EL+       +   +A    V   A     RV+  G     +    V    + + 
Sbjct: 225 ARAKGELVEALPVDGVAVLNADDAAVAAMASRTAARVVFYGTAEAQVRATDVVLDAHARA 284

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEF 348
             T+   G        + GE QV+NAL +A + +  G  +A V E L       P R + 
Sbjct: 285 AFTLHTAGGTAPVALKVHGEHQVHNALASAAVGLECGATTAQVAEALSGAGAASPRRMDV 344

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             T+     +   Y    +++   L+++  ++             RD+ +   +     +
Sbjct: 345 FTTDGGVTVVNDTYNANPDAMRAALRSLVLMSEHDEAG--ERLPGRDRRRTFAVLGEMGE 402

Query: 409 LADIAIVTDDNP-RSEDPEKIRAEIIHGIPG------------------FIEKGNRIEAI 449
           L + +I+  D   R      I + I  G                      I    R EA+
Sbjct: 403 LGEESILEHDRLGRFLVRLDITSTICVGSSRAVHALWQGAVMEGSWGSEAIRVDTRAEAV 462

Query: 450 RTAIEMLNKQDVLVV 464
                 L   D+++V
Sbjct: 463 ERLRAELRPGDLVLV 477


>gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
 gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
          Length = 453

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 143/395 (36%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +           +T                    + + A+  G   +    +K 
Sbjct: 130 YTQGNFNNDIGVPLTLLRSTTE-------------DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAPLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 478

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/484 (17%), Positives = 162/484 (33%), Gaps = 48/484 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           L D++ +   +   Q+ +      +      E   DSR ++ G +F+AI G K DGH FI
Sbjct: 4   LADILQQS-QDAQAQVQLVSTTTPDPVMTFTEAHHDSRQVKPGDLFIAIKGAKVDGHAFI 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
            +A   GA A + +           +      +VV +    L   A     + PE   + 
Sbjct: 63  HKAAQAGASAALCTHPVE------DVPEGFLQIVVPDVVAALHATARARTRRQPETTYIG 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK+S    +  + +R    +  +   ++ ++        T   +      + L  
Sbjct: 117 ITGSNGKTSTKEAIAAVLERH---APTLKTLASYNTEIGYPL--TLLRLEPQHRYAVLEM 171

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  ++  S                  TN+G  H+ Y  +Q+    A      ++L 
Sbjct: 172 GAQWVGELKMLSGI--------TCPDWSVITNVGASHLGYFGSQEQVVIA-KSELVQVLS 222

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +  A++  DD   + +  +           G        K        +   +S + ++
Sbjct: 223 PDGIALLNYDDPNVRAMNTKTSAR-VIYYGQGEGADVRASKPGGDQLFGRSFVLSYQDQE 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PGE  +  AL AA +  A G+   ++ + LE L     R E     +    I 
Sbjct: 282 VPVQLHIPGEHGIAIALAAAAVGCAAGLPLDVIRQALEDLKPAKRRGEIKPGPNGSTLID 341

Query: 360 VDYAHTSNSLEMILKNIRT---ITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
             Y     S+  I + +        G+   V G     G   + +    G     L D  
Sbjct: 342 DSYNANRQSILAIAQAMHGSTLAPHGKRWAVLGDILELGQYAREEHRTCGAALASLVDYI 401

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-------------FIEKGNRIEAIRTAIEMLNKQD 460
           +   +  R      I   I  G+P                 + ++  A     E +   D
Sbjct: 402 VAIGEQARF----FIEGAIEAGLPQDHAYFYSADLENSAEVEASKRAAADLLKEQVRGDD 457

Query: 461 VLVV 464
           ++++
Sbjct: 458 LVLI 461


>gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
 gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
          Length = 462

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 87/464 (18%), Positives = 161/464 (34%), Gaps = 33/464 (7%)

Query: 12  PELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           PE +  ++   +   E   ++ +S+DSR I+ G +F+ + G++ DGH ++     +  + 
Sbjct: 4   PEQLTTITHGRLIGPETASVSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTERRIQV 63

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            + + ++          S    + V +T + L   A+    +    ++ VTG++GK++  
Sbjct: 64  SLCNESWLQHQQPPATLS---CIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTTTK 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I  +        G  +                I L + L  L  +    V     
Sbjct: 121 EMLAAILDQVDQGLKTSGNLNNQ--------------IGLPQMLFQLKPEHCWAVLEMGM 166

Query: 191 SHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S   +  RL  I     G   N    H+    + +A   AK  L  + +     A++ AD
Sbjct: 167 SEPGEIDRLAEIACPSIGIVLNAFPAHLQSMGSVEAVAQAKGEL-LQRIQDGGLAVVNAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPG 308
           D     +     N   R  S G +   +  + V AI  + Q   +       +      G
Sbjct: 226 DP---RIASLHQNPSARRTSFGIKRGEVRAEAVQAIGTEGQAFKLVTPKGSIELRLKALG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  +YNAL AA   + +      + E LE      GRF     ++    I   Y     S
Sbjct: 283 QHNIYNALAAAAGLLELVG-LETIAEGLEAFVPYTGRFHLETLSNNRLLIDDSYNANPAS 341

Query: 369 LEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
               L  ++ I   R   V        G  +      +G  A  +AD   +      +++
Sbjct: 342 CAAALATLQGIKGNRRAFVALGDMLELGRDELELHRQLGIQAASVADRLYL--LGSLTKE 399

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                AE        I   +  E  R         D++++  KG
Sbjct: 400 TAGAAAEAGLASEAIISATSHEEIARDIHTHAGNGDLILL--KG 441


>gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychromonas ingrahamii 37]
 gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychromonas ingrahamii 37]
          Length = 489

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 159/423 (37%), Gaps = 29/423 (6%)

Query: 5   DLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++I     E+    +  I   +  E   N +S+D+R I++G +F+A+ G + D H F+ +
Sbjct: 13  NMISLTLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEK 72

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVT 121
           A+ QGA A+++             RS+ P ++V +TR  L L AS +  +       A+T
Sbjct: 73  AVQQGAGALLIDQK---------KRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAIT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    +  I           G    + + A +       P+ L           
Sbjct: 124 GSNGKTTTKELLSAIL------CCHTGNNENVLATAGNFNNDIGLPLTLL---RLTEKTR 174

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V + A+  G   +     K       N+   H++   + Q    AK  ++  L    
Sbjct: 175 YAVVELGANHLGEIAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTG 234

Query: 242 SPAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              +    D  S+ + +      +                 I    +     +  V ++ 
Sbjct: 235 IAVVNLDSDFASEYLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNR 294

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + +       L G   V NAL AA + +A+G +   +   L  +  V GR +    N   
Sbjct: 295 DPQAISIQLNLAGLHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRELNKLV 354

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413
             I   Y     S+++ +  ++   S  ++V+      GD  + +  ++G+ A       
Sbjct: 355 TLIDDTYNANPASVKVAIDLLQQYASSHLLVLGDMAELGDFSEHEHFLIGEYAAQKGIQT 414

Query: 414 IVT 416
           ++T
Sbjct: 415 LIT 417


>gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 423

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 125/363 (34%), Gaps = 27/363 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++D+R      +F  + G + +G+ F+P AI +GA  +V +         A      
Sbjct: 12  KGVATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTNDKKWSYLPQA------ 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V++T K L   A          I+A+TG++GK++    +  +  +S  +    G  
Sbjct: 66  --ILVEDTLKTLQELALYHRHYLATPIIALTGSNGKTTTKELIYSVLNQSFRTLKTEGNF 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +            TP                +  V + A+  G         +   G  T
Sbjct: 124 NNHLGVPLTLLRLTPE-------------TDIAIVEMGANHPGEIAQLCRIAEPDFGYIT 170

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N GR H++   + +    AK  L+  L           D+     ++    N     +  
Sbjct: 171 NFGRAHLEGFGSFEGVIQAKSELYNYLKKDNKRIFFCQDNEIQVRLLNGYSNTYSFSMEG 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +        +     K+ + + +  ++ +    L G++   N   A  +     +   
Sbjct: 231 NKKA------NLQLSLYKESLLVKLHWEESNIQTHLIGKYNAMNVAAAICIGNYFKLTKE 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++  +E       R +FV        +   Y    +S+   ++  + I S   I++ G 
Sbjct: 285 AIIHGIEGYIPTNNRSQFVEKAHGNKILMDAYNANPSSMHAAIEAFKEIPSANKILILGD 344

Query: 391 GGD 393
             +
Sbjct: 345 MKE 347


>gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 475

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 147/442 (33%), Gaps = 33/442 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R + AG IFVA+VG   DGH  I +A+  GA  ++      ++        + 
Sbjct: 37  TGVSIDTRTLAAGDIFVALVGENSDGHAHITRALDAGAAVVIAHRDPGVE--------DA 88

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            IL+VD+T   L+  A+    +    ++AVTG+ GK++    ++      G + + +   
Sbjct: 89  RILLVDDTLSALNAMAAFARTRFAGRMIAVTGSVGKTTTKDMLRHALGACGPTHWAVASY 148

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA      +S       V  ++ G        ++      T
Sbjct: 149 NNHWGV----------PLTLA---RLPASAMFCVCEVGMNNPGEIAPLAQMVRPDVAVIT 195

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H+ +  + +A    K  L   L       +       +    +  ++      + 
Sbjct: 196 TITGAHLGHMGSLEAIAREKSDLIAALPRDGVAIVPDDVTGMAIFATQARNHGARLWTAG 255

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            + G    ++      +       ++G         PG     NALVA     A+G D A
Sbjct: 256 THPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRHMAGNALVALTAAYAVGADMA 315

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +  L       GR            +  + Y  +  S+   L  +  + + R I V G
Sbjct: 316 CAVRGLADFRPGAGRGAITPILHGQASLLDESYNASVASIRATLDVLGQVPARRRIAVLG 375

Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                G   + +   +     + AD+      N       K   +++          +  
Sbjct: 376 DMLELGAFARDQHESLLPDVREHADLVFCCGPN------MKYLFDLLPPSRRGAWAPDAA 429

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
                    +   D ++V  KG
Sbjct: 430 TLAPQVRAAMRAGDAILV--KG 449


>gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
 gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
          Length = 453

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAPLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Francisella cf. novicida 3523]
          Length = 453

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 141/398 (35%), Gaps = 29/398 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 +  I  V+ +S  ++   +FVAI+    DGH FIP AIA GA+A++VS    L 
Sbjct: 14  LEYSGEDVSIQTVAINSNEVRQDCLFVAII-ANRDGHEFIPSAIANGAKAVLVSKKQDL- 71

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                   + P +V  NT K L   A          I+++TG+ GK++V   +  +    
Sbjct: 72  --------DIPQVVCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKTTVKEMIVTL--LG 121

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                                L TP  +  A   +  +  G    + +            
Sbjct: 122 SKKVHFTQGNFNNYLGVPMTILETPHNVDFAVIEAGTNVGGEIKAAADI----------- 170

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            I+      TN+G  H++  +T       K  L + L       +    D          
Sbjct: 171 -IQPNIAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIV--NLDDERIPAYADK 227

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +      S+  Q   I +           V I +  K++ +  P  G+  + N+++A  
Sbjct: 228 LDCKKITCSMSNQDADILILDYQVTPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAIA 287

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A G +    L++ + +    GRF     N +   +   Y  ++ +++  ++++    
Sbjct: 288 SVVAAGFEPNSFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLAEFD 347

Query: 381 SGRIIVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
             R+I +      GD  +     MG+       D   +
Sbjct: 348 GKRVIAITSMRELGDEAENYHRKMGQWLNKANLDKIFL 385


>gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
 gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
          Length = 468

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G  +             
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A   A                ++  D     + + A      V  
Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHTLGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         V    +   + I   G   D      GE    NAL A    +A G+  
Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A +   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 442

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 150/404 (37%), Gaps = 48/404 (11%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I Q+     Q   + +  VS DSR +++G +FVA+V    DGH ++ QA+ +GA A++V 
Sbjct: 8   IGQILNATTQIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQALTKGATAVLVD 66

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             +        I S  P ++V +T   L         +    ++A+TG++GK++      
Sbjct: 67  DRH-------QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKTTTKDMA- 118

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                    S  +G         ++       P+ L           V  V +     G 
Sbjct: 119 ---------SAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDD---TEVLVVELGMDRLGQ 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                + +       T +G  HI++ +T++    AK+ + + L  + +            
Sbjct: 167 LTTLSELVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGT------------ 214

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +   ++      +   Q      + +  I++    TI    ++  F  PL G + + N
Sbjct: 215 --LLIPYDEPLLTNAQVKQNVQTFGQDIKDINSSSSKTI-FTYQNTRFAIPLLGRYNIMN 271

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A    I + I+     E L+   +   R E + T+     I   Y     ++  +L 
Sbjct: 272 ALAAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLA 331

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD----LADIAI 414
            ++ I +    VV G            +G+ A      LA+  I
Sbjct: 332 TLKIIPATHKYVVLGDML--------ELGEQAARLHACLAETVI 367


>gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
 gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
          Length = 455

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 134/383 (34%), Gaps = 29/383 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     E +       +   E+    VS+D+R I  G +FV + G + +GH ++  AI 
Sbjct: 1   MLTSSLLESLTIS--TRLNETEQSFTAVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIK 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+A +       Q   A +  +  + VV +T   L   AS    K    ++ +TG++G
Sbjct: 59  SGAQAALWE---EGQPVPAALPDDFQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  +    G +    G                  P+ +    S         +
Sbjct: 116 KTTTKDILASLLSLEGETYKTQGN----------YNNHIGLPLTILAMPSTCK---YLIL 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  S +G +  RL  I     +      +        +A         +E L       
Sbjct: 163 EMGMSGYG-EIERLSEIAKPDLAIVTNIGESHMEQLGSRAGIAKAKMEIKEGLSPAGFLF 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I +D+       +        ++ VG+    I ++ V A  +  Q  I    +   F   
Sbjct: 222 IDSDEPLLDGWKQ------SSIMRVGFNHADILVENVAATVDGYQFDI----EGHHFELS 271

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+  V NA     +    G+ ++ +   L ++ +   R E +  N     +   Y  +
Sbjct: 272 LLGKHNVKNAAYCIAVARKFGLVTSKIQTGLRQISLTSMRLEKLTGNKGELIVNDAYNAS 331

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
             S+   +  ++ I S    VV 
Sbjct: 332 PTSMIAAIDALKAIPSYEKRVVV 354


>gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
 gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
          Length = 454

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 164/450 (36%), Gaps = 34/450 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++   +   +  I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V 
Sbjct: 9   IADITGGELVGNDLSIESVSTDTRAIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                     T+  N P +VV +++  L   A+ ++       +A+TG+ GK++V   V 
Sbjct: 69  K---------TLNVNVPQVVVADSKVALGQVAAWVHQACQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q  G   F  G  +               P+ L              + + A+  G 
Sbjct: 120 SILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHVGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            ++    +K       N+   H++   +      A      + L     AI+  D     
Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLAAGGIAIVNLDSNGEA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +  +   +      S        +   +           + I+   ++ +    + G+  
Sbjct: 226 KWDQVLADKKVITFSQNNTDADFYASNIVLNAAGEASFDLHIAATSQEIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + +  G     V   L+ L+ V GR E    +     I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALQFGATLEEVRTGLKHLNKVKGRVEVEELSDNIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +  +      R +++      G+        +G+ A       ++T       D + I 
Sbjct: 346 AVDLLSAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLT----YGADAKVI- 400

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +E+  GI  F      I+ I+  ++    +
Sbjct: 401 SELCDGI-HFETHQEMIDYIKQHLDQAGPE 429


>gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
          Length = 455

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 132/408 (32%), Gaps = 33/408 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  + +   +  +R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             Y      A       +L VDNT       A     +    ++ +TG+ GK++    + 
Sbjct: 74  RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +    G         +      +      P                   + +     G 
Sbjct: 130 AMLAVRGPVLKPEANYNNEIGVPKTVLQIDPD------------HHWAAVLEMGMRGRGQ 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                   +      TN+G  HI    + +             L     AI+ AD+    
Sbjct: 178 IAELARIAQPNIAVITNVGTAHIGLLGS-EQAIAEAKCELLAQLSGTGLAILNADNHRLI 236

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +R +   CR   +        L  +  +            +   F  PLPG     N
Sbjct: 237 ATAQRLNLPRCRTYGLQNGDLQGQLIDLETLV----------VEGQRFRLPLPGAHNALN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L    +   +G+D     +    L     R   +  +     +   Y     S+   L+
Sbjct: 287 FLAGLAIAQELGLDWEAFRDLSVTLPQGRAR--RIELSPDIVLLDETYNAGLESMLAALQ 344

Query: 375 NIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDD 418
            +      R I V G     GD  +     +G+ A  L  D  ++  D
Sbjct: 345 LLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYAD 392


>gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 468

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G  +             
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A   A                ++  D     + + A      V  
Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         V    +   + I   G   D      GE    NAL A    +A G+  
Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A +   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum MopnTet14]
          Length = 450

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 87/446 (19%), Positives = 162/446 (36%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G IF A+ GN+  GHLF+ QA   GA A VV+  Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +  V + R+ L              ++ +TG+ GK++  SF QQ+           
Sbjct: 78  -GLQLFHVADPRESLREAGRTQGALFQGEVIGITGSVGKTTTKSFTQQLLSSFYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 S  + +++LT P  I +A             + +  S  G  ++ L+ I+   G
Sbjct: 133 ----FASPKSYNSQLTLPLSILMADGDEDFLL-----LEMGVSEPGNMKNLLEVIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++   H      + A    + +     L +    ++  D ++    MK+   A    
Sbjct: 184 VITHIDVQHAMNFLDKGAKGIVEEKSLL--LERCGLQLLPKDSSWFPFFMKKNSTAEQFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    +   V IS    D +     P      N LVA  L     +
Sbjct: 242 FSMNNETSDFYYRAI----HSDGVLISAPDGDIELPVVFPYSPAYMNFLVAVALAWLTNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +    L +   RFE       G R+  D Y  + +S+   L  +      G+ +
Sbjct: 298 PMDRLEQVSPSLILPSMRFEQQ--EYNGIRVINDAYNASPDSMLAALDAVPVPPEGGKRV 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G         + + A+  A + +        E    +R  +          
Sbjct: 356 FILGHMAELGKYSNECHVAVARKAVTKAHVVVFI-----GEKWFPVRDVVRDANCQIEFY 410

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           G+  E +     ++ + DV+++  KG
Sbjct: 411 GSVNEIMHVVKSLVRQGDVVLL--KG 434


>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
 gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
          Length = 456

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 143/381 (37%), Gaps = 25/381 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +++ ++ DSR ++ G +FVAI G K DGH ++  A+ +GA A +V    S         
Sbjct: 26  LEVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEAALERGAGAALVQQQVSSA------- 78

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P L+V ++   L  F +     +   ++ +TG++GK++  + + +I  R+G      
Sbjct: 79  --LPQLIVSDSEAALQTFGAMTRAAYDGILVGITGSAGKTTAKNMLAEILSRAGSVVATK 136

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +               P+ LA   +         + + A   G      +  +    
Sbjct: 137 GNQN----------NELGVPLTLADLNND---TEYAVLELGAGKPGDIARLCEMARPNIA 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+   H+    +  A          + LP +  A+I ADD    +   RA    C  
Sbjct: 184 ILLNVAPAHLANFGSLDAISKT-KGALLDDLPADGLAVINADDPRVFDWHVRASPTRCLT 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +  +  +  +       +     +    +D +    +PG   +YNAL AA +  A+GI
Sbjct: 243 FGMNCKADYQAIDLQLKGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALAAAAVADALGI 302

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  + E L  +   PGR      +     I   Y     ++   +  + +    R +V+
Sbjct: 303 SAITIREGLAAVKPAPGRGGVAVLSPDASLIDDTYNANPVAVRAAIDVLASEPGRRRLVL 362

Query: 388 FGC--GGDRDQGKRPIMGKIA 406
                 G  ++     +G  A
Sbjct: 363 GAMLELGLDEEKLHAELGVYA 383


>gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
 gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
          Length = 476

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 135/443 (30%), Gaps = 29/443 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR    G +FVA+ G + DGH F+ +  A GA   VVS  + ++  +     +   
Sbjct: 34  VVIDSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRF 93

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV D+  K     A+    +    ++ + G++GK++    +  +   S       G    
Sbjct: 94  LVADDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLSTSFNVLVTQGN--- 150

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L +         V  + +  +  G  +      K   G  TN+
Sbjct: 151 -------YNNHLGVPLTLLQMRRD---TEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNI 200

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++  +     +A+  LF  L      A +  DD                    G 
Sbjct: 201 GHEHLEFFGSLDGVADAEAALFRYLEAHGGTAFVNLDDHRLAAAGASLSRKTGYGAQPGA 260

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG---IDS 329
              +   +       +   T+  E      +             VAA    A        
Sbjct: 261 GRAWWAEQIGADRVGRVSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGLAPAH 320

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
                          R E          +   Y    +S+ + L  +  I   GR I V 
Sbjct: 321 IAEGLGTLLPAKGWKRMELFEDGGI-VVLNDTYNANPDSVRLALDTLAAIECRGRRIAVL 379

Query: 389 GCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           G     GD    +   +G+    L   A +T  +      + I  +   G       G  
Sbjct: 380 GDMLELGDNSAIEHESIGRYIRQLPLDACLTLGD----AAQLICEQ--AGGRCLRHFGTM 433

Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468
            E      E +   D L+   KG
Sbjct: 434 DELRGFLSEYVQPGDALLF--KG 454


>gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 453

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 143/395 (36%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +           +T                    + + A+  G   +    +K 
Sbjct: 130 YTQGNFNNDIGVPLTLLRSTTE-------------DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           parahaemolyticus 10329]
          Length = 454

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 161/428 (37%), Gaps = 35/428 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I +++   +   +  I+ VS+D+R I  G +FVA+VG + D H F  QA   GA A++V 
Sbjct: 9   IAEITGGALFGNDLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQASEAGAGALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         N P +VV +T+  L   AS ++       +A+TG+ GK++V   V 
Sbjct: 69  KRLDV---------NAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +               P+ L              + + A+  G 
Sbjct: 120 SILQQKGNVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAY 252
             +    +K       N+   H++   + +    AK  +++ L       +      DA 
Sbjct: 167 IAYTTQLVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDAL 226

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V+           +        ++           + IS + ++ +    + G+  V
Sbjct: 227 WQSVLADKKVITFSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNV 286

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A+ + + +G     +   L  L+ V GR +    +S    I   Y  +  +++  
Sbjct: 287 ANAIAASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAA 346

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI 428
           +  +      R +++      G+        +G+ A       ++T   D        KI
Sbjct: 347 VDLLGAFHGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGAD-------AKI 399

Query: 429 RAEIIHGI 436
            +E+ HGI
Sbjct: 400 ISELCHGI 407


>gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
 gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
          Length = 453

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 152/395 (38%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRE-------- 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   LVV +T++ L    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 71  -LEADCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +     G   + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DGYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLREGAVAIVSLDSNGGEHWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFTLVTLIGEVDVELGIIGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEIRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 503

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 158/397 (39%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDTMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A+GA  ++V               + P +VVDNT   L+  A+ +       +LA+
Sbjct: 55  TEAVARGASGVLVDR--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   +  +  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  +  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++  +   +   V   G      I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++ + L +   V GR +   T   G 
Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIADGLAQARAVAGR-QIAQTLPNGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 465

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 143/455 (31%), Gaps = 38/455 (8%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR   AG ++VA  G   DGH F+  AI +GA A++           
Sbjct: 18  GPDACVTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERGAVAVIAERELEEA--- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILAVTGTSGKSSVASFVQQICQR 139
                    ++V+++ + L   A              ++A+TG+ GK++    + QI   
Sbjct: 75  ------VAQIIVEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKTTTKDLLLQILSE 128

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +       +          LT                     + + AS  G     L
Sbjct: 129 DGPTVAPKLSFN----NEVGLPLTALQADET---------TRHLVLEMGASGPG-HISYL 174

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             I     +                    A             P I+  DD   + +   
Sbjct: 175 TDIVSPDVAIELCVGHAHVGGFGGFEGVAAAKAELIAGTRPGGPVILNTDDPNVEAMAPM 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A     R  ++G     +  ++V     ++   T+            L G   V NAL A
Sbjct: 235 ATGPIVRFSALGEPRADVRAEEVRTDRADRASFTLVTPRGSAPVSLALVGRHHVSNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILK 374
           A   + +G+D   V   L       P R +    +  G     I   Y    +S+   + 
Sbjct: 295 AAGALTLGMDLDTVAAVLSGARALSPHRMDVHDLDIEGTALTLIDDSYNANLDSMRAGIA 354

Query: 375 NIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + +I      I V G   +  +  R +  ++   +AD  + T     +     +  E  
Sbjct: 355 ALASIGRDAVRIAVLGEMLELGEESRSLHEQVGALVADAGVDTLIGLGAHSHYYL--EGA 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+       +  +A R       +  V++V  KG
Sbjct: 413 SGVANRTVASDPSDAARLVARFAEEGAVVLV--KG 445


>gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 468

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G  +             
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A   A                ++  D     + + A      V  
Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         V    +   + I   G   D      GE    NAL A    +A G+  
Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A +   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
 gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
          Length = 468

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 134/383 (34%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G  +             
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A   A                ++  D     + + A      V  
Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         V    +   + I   G   D      GE    NAL A    +A G+  
Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A +   LE    V GR + V     +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAIKAGLEAFAPVKGRLQVVRAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechocystis sp.]
          Length = 454

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 149/474 (31%), Gaps = 55/474 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  +  ++     L + L        + +IN + +D+R + +G +F+A+ G   DGH FI
Sbjct: 1   MNSKLSLFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFI 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA+  GA A+V             +       +V++T       A+    +    I+ V
Sbjct: 61  PQALTAGAIAVVTDRPVE------GLGETVAQFLVEDTLVAYQHIAAGWRQRFTIPIIGV 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +  +  + G         +      +     +P               
Sbjct: 115 TGSVGKTTTKELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPD-------------- 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 VE +  G  Q  L            TN+G  HI    + +              
Sbjct: 161 -HDFAIVEMAMRGRGQIALLADIAKPTIGLITNVGTAHIGLLGS-ELAIAEAKCELLAHQ 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P ES AI+  D+A   E  +R          +        +     I +   + +     
Sbjct: 219 PPESTAILNRDNALLMETAQRFWQGKTITYGLEGGDVHGTVDGENLILDGVSLPL----- 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G     N L A  L   +G+D   +      + +  GR            +
Sbjct: 274 ------PLAGVHNASNYLAAIALAQCLGLDWQQLQ-SGLTVELPKGRARRYQWGQDVVLL 326

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414
              Y     S+   L  +      R + V G     GD        +G     L  D   
Sbjct: 327 DETYNDGLESMLASLDLLANTPGKRRLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLF 386

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIRTAIEMLNKQDVLV 463
           +  ++P +         I  G  G   +      + + A++T    L   D L+
Sbjct: 387 LLANDPNT-------DAIAAGANGVETQSFSDGPSLVAALKT---TLQPGDRLL 430


>gi|94991840|ref|YP_599939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545348|gb|ABF35395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 353

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 138/358 (38%), Gaps = 28/358 (7%)

Query: 2   KLQDLIYK--DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           +L D++ K  +F E+++    +   ++      +S DSR +    +F A  G       +
Sbjct: 6   QLLDILKKDHNFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADY 62

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NI 117
           + +AI  G +  +    Y L           P+++V + +K +SL A   YG   E   +
Sbjct: 63  LKEAITNGLQLYISEVDYEL---------GIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQ-IGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LA TGT GK++ A F   + + S   +      T+        ++LTTP  + L   ++ 
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             + G+TH+ +E SS      R+ G+    G F N+  DHI      +          + 
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVDRVYGLTFDVGVFLNISPDHIGP---IEHPTFEDYFYHKR 230

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           LL + S A++          +                  +  L       ++     +  
Sbjct: 231 LLMENSRAVVINSGMDHFSFLADQVADQ-------EHVFYGPLSDNQITTSQAFSFEAKG 283

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                +   L G F   NA+ A   C+ +G   A + + + K   VPGR E +   + 
Sbjct: 284 QLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAK-TRVPGRMEVLTMTNH 340


>gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
 gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
          Length = 468

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G  +             
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A   A                ++  D     + + A      V  
Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         V    +   + I   G   D      GE    NAL A    +A G+  
Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A +   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
 gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
          Length = 503

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 158/397 (39%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDTMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A+GA  ++V               + P +VVDNT   L+  A+ +       +LA+
Sbjct: 55  TEAVARGASGVLVDR--------LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   +  +  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  +  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++  +   +   V   G      I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++ + L +   V GR +   T   G 
Sbjct: 278 QGEAPIALPLPGRHNVLNALAATGLALGAGIALPVIADGLAQARAVAGR-QIAQTLPNGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70]
 gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70s]
 gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis Sweden2]
 gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/150]
          Length = 450

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 163/446 (36%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  + +A             + +  S     ++ L+ I+   G
Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++   H  +   + A    + +               +   + +   K+   A    
Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAAERFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    + + V IS    D +     P      N ++A  L     +
Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +  + L +   RFE       G R+  D Y  + +++   L  +      G+II
Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G         + + A+  A I     +  +      I  +    I  +   
Sbjct: 356 FILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++A++  ++     DV+++  KG
Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434


>gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
 gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
          Length = 457

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 15  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 66

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 67  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 126

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G  +             
Sbjct: 127 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 176

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A   A                ++  D     + + A      V  
Sbjct: 177 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 234

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         V    +   + I   G   D      GE    NAL A    +A G+  
Sbjct: 235 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 294

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A +   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 295 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 354

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 355 VIGEMGEVGDEGPAFHREIGAYA 377


>gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei NCTC 13177]
 gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
 gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
          Length = 468

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G  +             
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A   A                ++  D     + + A      V  
Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         V    +   + I   G   D      GE    NAL A    +A G+  
Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A +   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei K96243]
 gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
 gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia pseudomallei K96243]
 gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
          Length = 468

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 133/383 (34%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G  +             
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETEMLAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A   A                ++  D     + + A      V  
Sbjct: 188 NNAQREHQEFMATVEAV--ALEHAAVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDF 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         V    +   + I   G   D      GE    NAL A    +A G+  
Sbjct: 246 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A +   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|118473094|ref|YP_888508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118174381|gb|ABK75277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 509

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 89/521 (17%), Positives = 159/521 (30%), Gaps = 78/521 (14%)

Query: 5   DLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           D+      E++      I P Q     +   V  DSR +  G +F+A+ G + DGH F  
Sbjct: 3   DMTIARIAEIVGGELADITPEQAAATHVTGTVEFDSRAVGPGGLFLALPGARSDGHDFAA 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL------------------S 103
            A+  GA A++ +    +               VD+    L                  +
Sbjct: 63  AAVQSGAVAVLAARPVGVPAIVVRPDGG-----VDSASGALEHDTDGSGAAVLAALARLA 117

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +         I+ VTG+SGK+S    +  +    G      G  +            
Sbjct: 118 AAVANELAADGLKIIGVTGSSGKTSTKDLLAAVLAPLGEVVAPPGSFNNELGHPWTVLRA 177

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T    +L              + + A   G                 N+G  H+    ++
Sbjct: 178 TRDTDFL-------------VLEMSARHPGNIAALAAIAPPSVAVVLNVGTAHLGEFGSR 224

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +A    K  L  + +      I+ ADD     + ++      R+         +    V 
Sbjct: 225 EAIAKTKAEL-PQAVGPSGVVILNADDIAVAAMAEQTDARVVRISRDPGSDIDVWAGPVT 283

Query: 284 AIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                + + T+     + D    + G+ QV NAL AA + +  G     V + L      
Sbjct: 284 LDELARPRFTLHTRDGEVDVNLAVHGDHQVSNALCAAAVALECGATPQQVADALAAAGPA 343

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS----------GRIIVVFGCG 391
              R +          I   Y    +S+   LK +  +             R   V G  
Sbjct: 344 SRHRMQVSTRADGVTVINDAYNANPDSMRAGLKALAWMARQTAGGQPGGKRRSWAVLGEM 403

Query: 392 ---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGN 444
              GD    +   +G+ A+ L  + + +V     R+ +       ++ G          +
Sbjct: 404 AELGDDAITEHDAIGRFAVRLDVSRLLVVGSG--RAMNAMH-HGAVMEGSWGSESTMVAD 460

Query: 445 RIEAIRTAIEMLNKQDVL----------------VVAGKGH 469
              A+    + L   DV+                +VAG+GH
Sbjct: 461 ADAALTVLRDELQPGDVVLVKASNSVGLGALAEALVAGEGH 501


>gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Oceanobacillus iheyensis HTE831]
 gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15)
           [Oceanobacillus iheyensis HTE831]
          Length = 455

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 74/443 (16%), Positives = 152/443 (34%), Gaps = 33/443 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  I EV+ D+R   +  +++ IVG + DGH FI  AI  GA A +   +       +  
Sbjct: 22  DITIQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKNGAIATLWDKSIP---LPSEW 78

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P+  V++T   +   A+         ++ VTG++GK++    +  + + S  ++  
Sbjct: 79  DNSFPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTTKDLITSVVKTSYKTTAT 138

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +             P    L              + +  S  G  +      +   
Sbjct: 139 QGNLNNHIGLPLTILSMQPDTEVL-------------VLEMGMSQFGEIELLSKIAEPDY 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G  HI+   +++    AK+      + +   +         + ++ + +     
Sbjct: 186 TVITNIGESHIENLGSRKGIAKAKLE-----IIEGIKSNGNLFIDDDEPLLAKENIDMDD 240

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              +G          +  +      T + E  D  +   L GE    NA  A  +  A+ 
Sbjct: 241 SQIIGIGFTKESDINISNVKVHPDRT-TFEVTDKPYHVNLLGEHHAKNAAFAISIGKALN 299

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRII 385
           I    +     KL V   RFE     +    I   Y  ++ S++  ++ ++ +      +
Sbjct: 300 ISHENIQLAFNKLEVTGMRFELETGINGVHIINDAYNASATSMKASIQVVKEMEGFQNKV 359

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFI 440
           +V G     G   +     + ++                 E    I  EI    P     
Sbjct: 360 LVLGDILELGTYSEHYHRSIAEVIDSRISEIY-----TYGEQAFYIYDEITKQHPKVNVH 414

Query: 441 EKGNRIEAIRTAIEMLNKQDVLV 463
               R + + +  E LN Q +++
Sbjct: 415 YIKQREDVVPSLKEHLNNQTLIL 437


>gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
 gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
          Length = 454

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 173/469 (36%), Gaps = 38/469 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ N ++   +   +  I+ VS+D+R I  G +FVA+VG + D H F  QA+ 
Sbjct: 1   MIKVTLSQIAN-ITRGELFGDDLLIDAVSTDTRAIDNGALFVALVGERFDAHNFCQQAVD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++V            +  N P +VV +T+  L   AS ++       +A+TG+ G
Sbjct: 60  AGAGALLVQK---------HLDVNVPQVVVSDTKMALGELASWVHQTCQTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I Q  G   F  G  +               P+ L              +
Sbjct: 111 KTTVKEMVASILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +K       N+   H++   +      A      + L   S AI
Sbjct: 158 ELGANHIGEIAYTTQLVKPDIALVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLAAGSIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDF 302
           +  D +   +      +      S        +   +           + I+   ++ + 
Sbjct: 217 VNLDSSGETKWESVLADKEVITFSQSNSAADYYASNIVMNAAGEASFNLHIAASSQEIEL 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G+  V NA+ A+ + + +G     V   L+ L+ V GR E    + +   I   Y
Sbjct: 277 SLGIIGQHNVANAIAASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSY 336

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +  +++  +  +      R +++      G+        +G+ A       ++T    
Sbjct: 337 NASVPAMKAAVDLLAAFPGQRWLILGNMAELGEESLALHRQVGEYAAPQKFEHVLT---- 392

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QDVLVVAGKG 468
              D + I +E+  GI  F      IE I+  ++        ++V  KG
Sbjct: 393 YGADAKVI-SELCQGI-HFETHQEMIEYIKQHLDQAVPENHTILV--KG 437


>gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
 gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
          Length = 454

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 137/383 (35%), Gaps = 24/383 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +     +S+DSRH+Q G +F+A+ G   D H F+ +   +   A++V            
Sbjct: 19  ADTLFEGISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKVAAVLVER--------VP 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P ++V +TR  +   A     +    ++ VTG++GK++V   +  I + +   + 
Sbjct: 71  ENYPLPAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEMIASIFRTAWGENC 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                +  +               L +       +   +   E +          G+   
Sbjct: 131 LATSGNFNNDVGVPLT-----VFRLNEMHRAAVIELGMNHIGEMAYLASIAQPTVGL--- 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N  R+H ++ Q+ +A       +    LP+   A+  ADDAYS      A     
Sbjct: 183 ---VNNAQREHQEFMQSVEAVARENGTVIRM-LPENGIAVFPADDAYSSLWAGYAGGRQT 238

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                          ++     +  ++++ E  +        G   V NA+ AA  C+A 
Sbjct: 239 MTFGFSKDADVSAAYRIEKGKTRLVMSLAGEQVE--MSLSTSGRHNVRNAMAAAACCLAA 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    + E LEK   V GR E     +    I   Y    +S+   +  +  + S  I 
Sbjct: 297 GIGKLEIAEGLEKFVPVRGRLERKTAFNGALLIDDTYNANPDSVRAAIDVLADMPSDGIF 356

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  G+  +     +G  A
Sbjct: 357 VLGDMGEVGEEGERFHAEVGAYA 379


>gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
 gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
          Length = 464

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 170/472 (36%), Gaps = 49/472 (10%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             EL++   + P    E ++++V++DSR    G +F A+ G   D H F+ Q   QGA+ 
Sbjct: 9   LSELLSAKEVNPPS-AELEVDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQGAKI 67

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV  A            + P LVV NT+K L   A  +  +    + A+TG+SGK++V 
Sbjct: 68  LVVEHADPA--------VSVPQLVVANTKKALGQLALWVRQQVNPKVAAMTGSSGKTTVK 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                I Q++  ++ ++  T+   +      LT                     + + A+
Sbjct: 120 EMTAAILQQTAKNADEVLFTAGNFNNDIGVPLTLL---------RLTDQHRFAVIELGAN 170

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G   +     +       N+   H+    + Q    A      + L +   A+I  D 
Sbjct: 171 HAGEIAYTTQLARPDVALVNNVAPAHLAGFGSLQGVAKA-KGEIYQGLTENGIAVINQDC 229

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y     +       +  S+ +    I+ + +   +      +     + +   P  G  
Sbjct: 230 NYLPMWQQNIAQHPIKRFSLTHSEADIYARAIQHTNIGFSFVLCTPQGEIEIELPYLGLH 289

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL AA L IA+G     V + L     V GR   +  NS+   +   Y    +SL+
Sbjct: 290 NVSNALAAASLAIALGATLDDVKKGLALGKRVKGRLFPIEVNSQLTLLDDTYNANVDSLK 349

Query: 371 MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-----------LDLADIAIVT 416
             +  + +      ++V G     G+  +     + + A              + +   T
Sbjct: 350 AAISVLYSAPQQVKVLVVGDMAELGESTEQCHRQVAEAALNANLDQVMSFGQYSRVISQT 409

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +D  ++ A++                 + A + +     +++  KG
Sbjct: 410 CGGKHYQDKAELIADLQ----------------QYAAQQMKAGKTILILVKG 445


>gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis EO147]
          Length = 468

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 139/394 (35%), Gaps = 26/394 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
               +         VS+DSR    G +FVA+ G   D H F+    A+GA A +VS    
Sbjct: 15  GATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSR--- 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                +    N P L V +TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 72  -----SPAEWNLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++      ++           P+ L +  +      V  + +          R
Sbjct: 127 AAAGADARLATAGNFNNDI-------GLPLTLLRLTAAHRLAVVE-LGMNHPGETETLAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +           N  R+H ++  T +A            L  +  A+  ADDAY+     
Sbjct: 179 IAA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYASIWRV 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++   G       V  + +  ++ I       D      GE    NAL +
Sbjct: 236 AATGNRIVDFALHGAGHDTPA-AVTGVLDGSRLAIDTPDGRIDVQLNALGEHNARNALAS 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILK 374
               +A G+  A + + LE    V GR +          G  +  D Y    +S+   + 
Sbjct: 295 TAAALAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            +   ++ R++V+   G  GD        +G  A
Sbjct: 355 VLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYA 388


>gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
 gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
          Length = 456

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 93/468 (19%), Positives = 163/468 (34%), Gaps = 38/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++       +       +   +   + V +DSR I A  +FVA+ G + DGH ++ +  A
Sbjct: 1   MLKPWLLSEVAANLNARVIGADVAFSAVGTDSRTIAADQLFVALNGPRFDGHDYLAEVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A +V    +         +  P L+V +TR  L    +        ++ AVTG+SG
Sbjct: 61  KGAVAALVEREVA--------NAPLPQLLVADTRVALGQLGALNRQAFKGSLAAVTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV   +  I +         G    + +   +      +P+ L + +          +
Sbjct: 113 KTSVKEMLASILRA--------GLNGAVLATRGNLNNDLGAPLTLLELVPEHR---AGVI 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +   +      TN G  H+      +    A      E LP +  A+
Sbjct: 162 ELGANHVGEIAYTVSLTQPQVAIITNAGNAHVGEFGGPEKIVEA-KGEILEGLPSDGVAV 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLF 304
           +  DD       +RA        ++       H   +       Q  T+           
Sbjct: 221 LNLDDKAFVTWQRRAAGRKVLSFALRDTRADFHGSDLARDERGCQGFTLRSPIGSARIQL 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L GE  V NAL A     A+G+    +++ LE L  V GR       +    I   Y  
Sbjct: 281 NLLGEHNVANALAACAAAHALGMPLVAMVQGLESLQPVKGRAVAQLAPNGVRVIDDSYNA 340

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNP 420
              S+   +  +    SGR ++V G  G+     +QG R  +G+ A    D         
Sbjct: 341 NPVSMCAAVDILAGF-SGRTVLVLGDMGELGEWAEQGHR-DVGRHAAGKVDALYAVGPLM 398

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           R          +           ++ E I  A+        L++  KG
Sbjct: 399 RF--------AVEEFGSKGRHFVDQAELIE-ALRAEQAGSTLLI--KG 435


>gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis C6786]
          Length = 468

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 137/394 (34%), Gaps = 26/394 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
               +         VS+DSR    G +FVA+ G   D H F+    A+GA A +VS    
Sbjct: 15  GATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDVAARGASAAIVSR--- 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                +    N P L V +TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 72  -----SPAEWNLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++      ++           P+ L +  +      V  + +          R
Sbjct: 127 AAAGADARLATAGNFNNDI-------GLPLTLLRLTAAHRLAVVE-LGMNHPGETETLAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +           N  R+H ++  T +A            L  +  A+  ADDAY+     
Sbjct: 179 IAA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYASIWRV 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++   G       V    +  ++ I       D      GE    NAL +
Sbjct: 236 AATGNRIVDFALHGAGHDTPA-AVTGALDGSRLAIDTPDGRIDVQLNALGEHNARNALAS 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILK 374
                A G+  A + + LE    V GR +          G  +  D Y    +S+   + 
Sbjct: 295 TAAAFAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            +   ++ R++V+   G  GD        +G  A
Sbjct: 355 VLAAQSAPRVLVIGEMGEVGDEGPAFHREIGAYA 388


>gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
 gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
          Length = 453

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 151/395 (38%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R I+ VS+DSR+I A  +FVA+VG + D H F  QA+  GA A++V           
Sbjct: 19  GADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQAVTGGAVALLVQRE-------- 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + ++   LVV +T++ +    + ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 71  -LEADCSQLVVADTKQAIGQLGAWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +     G   + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DGYAVIELGANHIGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L + + AI+  D    +       +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLREGAVAIVNLDSNGGEHWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V           +     + D    + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGVASFILVTPIGEVDVELGIIGQHNVGNALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A V   L  L  V GR +          I   Y  +  +++  +  + + ++ R
Sbjct: 296 EMGASLAEVRHGLAHLSKVKGRVDLTQLREDIKLIDDSYNASVPAMKAAVDLLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 462

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 139/410 (33%), Gaps = 24/410 (5%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+   I +    +      F     +  +  V  DSR IQAG +FV +V    DGH +I
Sbjct: 1   MKMT--IGEVAQAINANTENFDKAMLDESLTGVCFDSRKIQAGQLFVPLVAEH-DGHDYI 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AIA GA A + +S ++ +     +    P LVVD+        +     K    ++AV
Sbjct: 58  DNAIAGGASATLWASDHADR-----LPLTIPALVVDDLLTAFQQLSKYYLDKINPRVIAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +   +      +               P  + +  S   + 
Sbjct: 113 TGSNGKTTTKDMIAAILSSTFNVTKTQDNFN----------NEIGLPYTILQMES---NT 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +     G     L  +     +   +  +        +             L  
Sbjct: 160 EFLVAEMGMDRPG-QLDFLSKLARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGLKA 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+    E  ++   +  +          +          + Q  +++   + 
Sbjct: 219 DGFFVYDGDEPLLTERAQQVDESVIKATFGRKDSNDVFAIDSKDGQYQTQFHVNL-WPEI 277

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF  P+ G++ V NAL A  +     I   ++ + L K  +   R +++  +     +  
Sbjct: 278 DFTIPMIGDYNVNNALAAISVGRIFRIHPQMMADKLAKFDLTKNRTQWLSGSKGERILSD 337

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            Y     + + +L   +   T GR I V G   +     + +   +A  L
Sbjct: 338 VYNSNPTAAKEVLTAFKNTTTKGRRIAVLGDMLELGTQSKAMHASLADAL 387


>gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 468

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 82/458 (17%), Positives = 148/458 (32%), Gaps = 40/458 (8%)

Query: 13  ELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           E+ + +    +      ++     D R    G +FVA  G   DGH + PQA   GA A+
Sbjct: 3   EIASLVGGKVIGDGSVTVSAPAVIDGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGAVAV 62

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSV 129
           + S             +  P +VVD+ +  L   A+ +    +    ++A+TG+ GK+S 
Sbjct: 63  LGSR-----------PTTLPTVVVDDAQAALQRLAAHVVALLRDGLTVVAITGSQGKTST 111

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ +   +  +    G          +N L  P        L   ++     + + A
Sbjct: 112 KDMIEAVLSSAAPTVATSGS--------FNNELGVP-----LTMLRADATTRFLVLEMGA 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G        +       TN+G+ H+    +++A   A        L     A+++AD
Sbjct: 159 RHIGDIAELTGLVAPDIAVVTNVGQAHLGEFGSREAIAVA-KSELVRGLAGGGTAVLHAD 217

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +            +    G  +    +  +  +    +  +        P  G 
Sbjct: 218 DPRVLAMSDLTDGPVLTFGAGERAGVRVRDLALDRLG-RPSFALRHDDATAVVTLPFVGA 276

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NA  AA   +A G+        L    +   R E    +     +   Y     S 
Sbjct: 277 HWALNAAAAAAAGLAAGVGLGQAATALNTASISKWRMELRALSGGATLLNDSYNANPEST 336

Query: 370 EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  +  I + R I V G     G+  +     +G  A   AD+  +T      E   
Sbjct: 337 RAGLDALAAIEARRRIAVLGEMLELGETSRDAHHEIGTYAATRADLV-LTV----GEAAA 391

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I           +   +   AI      L   DV++V
Sbjct: 392 VIADGAGA---KAVALPDNAAAIDWLRSHLAPGDVVLV 426


>gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
 gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
          Length = 457

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 78/483 (16%), Positives = 161/483 (33%), Gaps = 58/483 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + +  IN++  DSR I AG +F+ + G + DGH 
Sbjct: 1   MKL------TLHEIAKVVGAKNNVTAYEDVAINQIEFDSRKITAGDLFLPLKGVR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A               + ++   ++V++  +     A+    K   +++
Sbjct: 54  FIQTAFENGALATFTEKD---------LPADQAHILVEDALEAFQKLAAYYLEKTGVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G          +N +  P         +   
Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +E     +    L        +                    A+ ++  +  
Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   ++   D      +                G+   L        K  +T S    
Sbjct: 210 MPDGSLLLVPSDPIVDPFLPSNLEVV-------RFGEGSDLTVSELTEYKDHLTFSTNFL 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA+VAA +    G+    +   L  L +   R E+    +    +
Sbjct: 263 DGQITLPVTGKYNATNAMVAAYVAKHWGVTEENIFSALANLQLTKNRTEWKKAANGADIL 322

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +  +    +  ++ L LA    D
Sbjct: 323 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLAPDAID 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-----GNRIEA-IRTAIEMLNKQDVLVVA 465
             I   ++    D  ++ +++   I            ++ +A ++   E L + D +++ 
Sbjct: 383 TVIFYGEDIA--DLSQLASQMFP-IGHVYYFKKTADEDQFDAMVKRIKESLGEHDQILL- 438

Query: 466 GKG 468
            KG
Sbjct: 439 -KG 440


>gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 462

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 151/412 (36%), Gaps = 34/412 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M    +   +F E++    I        K + VS DSR ++   +F AI G + DGH F+
Sbjct: 1   MNEALMTIGEFAEML-GSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    +  +  + P ++V +TR+ L   A +   K    ++AV
Sbjct: 59  QA---------ASDAGAAAAVVTHFVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            G++GK++    V  I +        +G    +++            + L          
Sbjct: 110 AGSNGKTTTTQMVLSIIKERFQKGAWVGTEGNLNNELG---------VSLMLW---KLRP 157

Query: 181 GVTHVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                  E   + + + R  +  I    G+ TN  RDH ++  + +        +F + L
Sbjct: 158 EHQAACFEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQ-L 216

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P++  A+I A D ++ E  K       RV++ G     ++  +V          +     
Sbjct: 217 PRQGVAVINAADPFAVEWRK--MAGNNRVVTFGTPDSDVYACEVEGTA----FRLVTPIG 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    +PG+  + NA+ AA +  A+G D   + + LE    V  R E V  +     I
Sbjct: 271 QIDIELKVPGKHNIVNAVNAAAVLFAMGRDLCDIKKGLENFEAVSHRGEVVTLDDGSVVI 330

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
              Y    +S+   +  +      +I V    G  G +       +G+    
Sbjct: 331 DDSYNANPDSMNAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRR 382


>gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
 gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
          Length = 457

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 143/413 (34%), Gaps = 28/413 (6%)

Query: 9   KDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    +I  L    ++  + +  +  V  DSR +  G +++ I G   +GH F+ QAI  
Sbjct: 3   RSIDSVIRMLDADYIENSDIEEMLMGVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDN 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+A++                   +++V++T K L   A     +    ++ +TG++GK
Sbjct: 63  GAKAVLWER------REPNPPKEVTVILVEDTTKALQDLARAYRNQLDMKVIGITGSNGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    V     +  ++   +G  +               P+ L    S+  +  V  V 
Sbjct: 117 TSTKDIVASFMAQHYITQKTMGNFN----------NEIGVPLTLL---SFSQNVEVGVVE 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +   + G      + ++      TN+G  H++   + +    AK+ + E L         
Sbjct: 164 MGMENLGELSFLTNLVRPDIAIITNVGTAHLENLGSMENIARAKVEIAEGLRDGGMLIYN 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                    +     + G  + S G Q    +   +     +Q+  +S    D      +
Sbjct: 224 GDQPLLKDALRAAQLSGGIALRSFGTQQGNDY---IVHEVCQQKEGLSFYINDVACHLDM 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+ Q  NA  A     A+ +  A  L+  E +     R E V  +     +   Y    
Sbjct: 281 IGKHQAMNATAAWIAAKALQVCEAEALKGFESIEKTGLRNELVSFDQA-LILNDSYKSNP 339

Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            S    L  +        + V G     G+        +GK   +     ++T
Sbjct: 340 QSALAALDTLEEFDIPYKLAVLGDMLELGETSDQIHYQLGKDLKNYHLQEVLT 392


>gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
          Length = 468

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 140/383 (36%), Gaps = 26/383 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +T   N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------STGEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGVRARLAT 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
               ++           P+ L +  +      +  V +  +  G                
Sbjct: 138 AGNFNNDV-------GLPLTLLRLNAAHR---LAVVELGMNHPGETDALAKIAAPTVALV 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A            L  +  A+  ADDAY+      A        +
Sbjct: 188 NNAQREHQEFMATVEAVALEHA-AVIHALGPDGVAVFPADDAYAGIWRVAATGNRIVDFA 246

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +   G+      V  + +  ++ I       D      GE    NAL A    +A G+  
Sbjct: 247 LHGLGRDTPA-AVTGVLDGSRLAIDTPDGRVDVRLYALGEHNARNALAATAAALAAGVPL 305

Query: 330 ALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
           A V   LE    V GR +       +  G  +  D Y    +S+   +  +   ++ R++
Sbjct: 306 AAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAAIDVLAACSAPRVL 365

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  GD        +G  A
Sbjct: 366 VIGEMGEVGDEGPAFHREIGAYA 388


>gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 153

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 8/150 (5%)

Query: 6   LIYKDFPELINQLSI--FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   ++      Q+    I  VS D+R I+ G ++V I G + DGH F+ +A
Sbjct: 1   MINRTLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +     +          N P++ V++T   L + A     +    ++ VTG+
Sbjct: 61  VENGAVATLWVKDVANP------PENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +GK+S    V  +           G  +  
Sbjct: 115 NGKTSTKDIVTSLLATKFKVQKTEGNFNNH 144


>gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga
           algicola DSM 14237]
 gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga
           algicola DSM 14237]
          Length = 436

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 128/365 (35%), Gaps = 32/365 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            K + +S+D+R +    IF A+ G   DG+ +  +A+  GA+  V+         +    
Sbjct: 23  LKFSTISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAKYAVIDDERFADSDAT--- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                ++V +    L   A+     +   ++A+TG++GK++    +  +   +  +   +
Sbjct: 80  -----ILVPDVLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATV 134

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIA 206
           G  +               P+ L    +      +  + + A+ H  +   L  I +   
Sbjct: 135 GNLNNH----------IGVPLTLL---AIKEDTEIAIIEMGAN-HQKEIEFLCNIAEPDF 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  TN G+ H++   + +     K  L++ L   E P    ADD      +         
Sbjct: 181 GYITNFGKAHLEGFGSFEGVIKGKSELYDYLQKDEKPIFFNADDELQANKLSNY------ 234

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +   G+     H   +        V I  E ++      L G +   N   A  +     
Sbjct: 235 INKFGFSETDSHYYNIQLKEADPFVQIIFENQEIV--SNLIGAYNFINCCAAIIMGKYFN 292

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    +   +E+      R + +  N     I   Y    +S++  L N   + + + IV
Sbjct: 293 VSIDQIKNGIERYIPSNNRSQVLTQN-TNEIILDAYNANPSSMKAALDNFSKLKTTKKIV 351

Query: 387 VFGCG 391
             G  
Sbjct: 352 FLGDM 356


>gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
 gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
          Length = 452

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 168/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+ +     D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQIPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400


>gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
 gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
          Length = 455

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 141/386 (36%), Gaps = 25/386 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +   + VS+D+R + AG +FVA+ G   D H F+ +   +G  A+V             
Sbjct: 19  ADASFDGVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGVAAVVAER--------IP 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P L+V +TR  L   A          ++ VTG++GK++V   +  I + +     
Sbjct: 71  ENYPLPALIVADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEMIATIFKTAFGEDG 130

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           ++  +   ++           P+ + +      +  +                    +  
Sbjct: 131 RLATSGNFNNDI-------GVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIA---QPT 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G   N  R+H ++ QT  A       +    LP+   A+  AD+ YS    + A     
Sbjct: 181 VGLVNNAQREHQEFMQTVLAVAEENGTVIRS-LPENGTAVFPADEPYSDLWTRYAGARQI 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R   +G   K     K         V I  EGK +       G+  V NAL AA    + 
Sbjct: 240 RTFGLGKDAKVSGQYKNE--DGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAACARSA 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GID   +++ LE    V GR E     +    I   Y    +S+   +  +  + SG+ I
Sbjct: 298 GIDWQTIVKGLEAFSPVHGRLEKKNAFNGALLIDDTYNANPDSVRAAIDVLAEL-SGKGI 356

Query: 386 VVFGCGGDRDQG---KRPIMGKIALD 408
            V G  G+           +G+ A +
Sbjct: 357 FVLGDMGEVGNDGERFHVEVGEYAKE 382


>gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
 gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
          Length = 466

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 12/152 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L D++                +     I  V  DSR +  G +FV + G + DGH F 
Sbjct: 3   MTLSDILAAT------GAVGDVGERGNPVIEAVRIDSRAVVPGSLFVCVPGARLDGHHFA 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +GA A++           A +   TP+L+V +T   L   A     +    ++AV
Sbjct: 57  AEAVEKGAAAVLADRPL------AGLPEGTPVLLVRDTVAALGRLARAWRERVGARLVAV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +G++GK++V      I  + G ++      + 
Sbjct: 111 SGSAGKTTVKELTAAILGKVGPTAKNYKNFNN 142


>gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 451

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 162/420 (38%), Gaps = 43/420 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L DL       LI +         + +I  VS+D+R +  G +FVA+ G + D H F  
Sbjct: 5   RLADLAQVLDARLIGE---------DGEITTVSTDTRTLGKGALFVALRGERFDAHDFCD 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           QA+A GA A++V    SL           P LVV ++ K L      +  +    +LA+T
Sbjct: 56  QAVAAGASALLVERELSLA---------IPQLVVTDSLKGLGHIGKLVRERINPKVLAIT 106

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++V      I +  G      G  +               P+ L           
Sbjct: 107 GSCGKTTVKEMTTAILRHEGEVLATAGNFN----------NEVGVPLTLL---RLEPQHQ 153

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + A+  G         +  A    N+   H++   + +  F+A      E L ++
Sbjct: 154 FAVMELGANHPGEIAWTTSLARPDAALINNVAAAHLEGFGSLEGVFHA-KSEIFEGLSEQ 212

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             AI+ AD A+  +      +      S+  Q +  H + +        +  +     + 
Sbjct: 213 GTAIVNADSAFWPKWQAAGIHCA---FSIEDQNQPFHARGIALNGQGCAEFVMVTPNGEL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NAL AA  C+A+G   A V   LE++  V GRF        G  +  
Sbjct: 270 SLTLAIPGRHNVANALAAAAGCLALGASLASVKAGLEQMAPVKGRFCVQRWG--GLTLVD 327

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
           D Y  +  S+   +  +  +  G  ++VFG     G+    +   +G+ A +    A++T
Sbjct: 328 DTYNASVESVLAGIDALTAM-GGYKVLVFGDMKELGEESAEQHARVGRHASECGLDAVLT 386


>gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxidans DMS010]
 gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxydans DMS010]
          Length = 451

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 144/408 (35%), Gaps = 31/408 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L      E++   +I    + + K++    D+R IQAG +F+A+ G   DGH ++
Sbjct: 1   MGL-NLTLNQVAEIVACDAI----YADIKVSGAVVDTRKIQAGDLFIALKGEHVDGHDYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            Q            +  +    S       P LVV + RK  +  A     +    ++A+
Sbjct: 56  AQ---------AREAGAAAALVSEIQDDALPQLVVADVRKAFAHIARAWQQQCKARVVAI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV   V  + ++ G  +   G          +N L  P  +         +  
Sbjct: 107 TGSNGKTSVKEMVTTMLKQVGSVTATQGNL--------NNELGVPLTLSCLNQDDDFA-- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  + HG     ++ +        N+   H+    + +     K  +++ L   
Sbjct: 157 ---VIEMGTNHHGEIAELVNIVVPDIAVINNIAAAHLAGFGSLEGVAKEKGAIYDGLAAN 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +    D   + + +        +         I    +          ++++    
Sbjct: 214 GIAVV--NADMPYQRLWQPLIGDRKTISFSLESEADIKADYIQLDPASSHFLVNIDDVSH 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PLPG   V NAL A  + +A+ I    +++ L  +  VP R +     +    I  
Sbjct: 272 HFNLPLPGMHNVNNALAAIAVAVALDIPVDAMVKGLSLMRSVPHRLQVRQGVNDSRLIDD 331

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            Y     S    L  +        +V+  FG  G  +      MG+ A
Sbjct: 332 TYNANPGSYLQALNTLTAFQGEHWLVLGDFGELGIDNDNIHQQMGQQA 379


>gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-66c26]
 gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-76w55]
 gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-97b34]
 gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-37x79]
 gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
 gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile QCD-32g58]
 gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
          Length = 457

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 157/458 (34%), Gaps = 29/458 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L     +    + +  ++++  DSR   A   FVAIVG   DGH F+  A   G +  + 
Sbjct: 11  LATNGKLIYGDYNDC-VSDIVIDSREASAQNAFVAIVGENLDGHTFMKPAYDSGCKTFI- 68

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
               +  +      S+  ++ V +T   L   +     K     + VTG+ GK++    +
Sbjct: 69  ---KNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRDMI 125

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                            +               P+ L              + +  S   
Sbjct: 126 YSAISAKLNILKNEKNLNNHFGV----------PLTLFNLNKE---HECAVIEMGMSGFN 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             ++ +D +       +N+G  H++   +Q+    A          + +  I+  DD + 
Sbjct: 173 EIKYLVDIVNPKIAVISNIGLSHVEKLGSQEGILKA-KMEITSNFDETNTLIVNGDDKFL 231

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             + ++ H    +          I+ +      +       + GK  +   P  GE  +Y
Sbjct: 232 STLKEKEHVYKLKTFGFNK-NNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIY 290

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA+ A  + + + I    + + L+       R + +        I   Y  + +S++  L
Sbjct: 291 NAMSAILVGLCLNISLDYIKKGLKNFKGTKMRLDIIKNEKL-TIINDSYNASPDSMDAAL 349

Query: 374 KNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           K +      R+ +   +   G   + G R ++GK +++  DI I   +N      E    
Sbjct: 350 KILGRYKGRRVAILGDILEMGEISEYGHR-LVGKSSMNNTDIIITIGENSVFIGEE--AK 406

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++           NR +      E++   D ++V  KG
Sbjct: 407 QLGFNSANIYHFENREDVFNKLNELVKTGDTILV--KG 442


>gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 509

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 137/447 (30%), Gaps = 47/447 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L   D  E+    ++  +   ++++   +  DSR +  G +F+A+ G + DGH +  +AI
Sbjct: 4   LSIADIAEITGG-NLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAI 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFASRLYG 111
            QGA A++ +    +       +           +   +         + LS  A  +  
Sbjct: 63  EQGAVAVLAARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTR 122

Query: 112 KHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           +         + VTG++GK+S    +  I +  G +    G  +                
Sbjct: 123 RLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPY--------- 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL            + A   G  +H         G   N+G  H+    +++   
Sbjct: 174 ----TALRCDEHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIA 229

Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVC 283
            A  ++        +   A++ ADD +   +  R                    +   + 
Sbjct: 230 QAKGELVEALPSAAEGGVAVLNADDPFVAGMAPRTSAKVVYYSANKPPASDAQYYASDIQ 289

Query: 284 AIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   +              + G+ QV NAL AA   I  G+D  +V   L     
Sbjct: 290 LDDVARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQN 349

Query: 342 -VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGD--- 393
               R +          I   Y    +S+   +             R I V G  G+   
Sbjct: 350 ASEHRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGG 409

Query: 394 RDQGKRPIMGKIALDL-ADIAIVTDDN 419
                   +G++      D  +   DN
Sbjct: 410 EAVAAHRALGEVLSKYHVDHLVAVGDN 436


>gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli WV_060327]
 gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli RN587/1]
          Length = 452

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 167/448 (37%), Gaps = 49/448 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1   MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P L+V +TR      A+ +  + P  ++A+TG+SG
Sbjct: 60  GGAGALLVSRPLDI---------DLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G + +  G  +            TP                   +
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPE-------------YDYAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G     +   +  A    NL   H++   +      AK  +F   LP+   AI
Sbjct: 158 ELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSG-LPENGIAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + AD+           +      S            +    +  + T+       D L P
Sbjct: 217 MNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     +   L  L  VPGR   +        +   Y   
Sbjct: 277 LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAENQLLLDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSED 424
             S+   ++ +  +   R++VV    GD        M ++ A   A    V       E 
Sbjct: 337 VGSMTAAVQVLAEMPGYRVLVV----GD--------MAELGAESEACHVQV------GE- 377

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                A    GI   +  G +  AI TA
Sbjct: 378 -----AAKAAGIDCVLSVGKQSHAISTA 400


>gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 851

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 159/461 (34%), Gaps = 28/461 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            +LI   +         + +  + DSR  Q G +F+A+   + DGH FI  AIA GA  +
Sbjct: 5   ADLIAAGAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGATGV 64

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V       Q   + I ++  +++ ++    L  +A   + KH    +A+TG+ GK+S   
Sbjct: 65  VC------QYAPSVIPASITVIICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKR 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q+              +                + L+  ++ L++Q    +   A  
Sbjct: 119 AIAQVLASRYSVLRSPRSFNAD--------------LGLSVTMAELAAQQWAVLEFGADH 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G             G  TN+G  H+    +Q A  + K     + LP    AI+  DD 
Sbjct: 165 PGEIAQLCQLFPPEIGIVTNVGSAHLGAFGSQAAIAHEKA-AIIQQLPAHGYAILNGDDP 223

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + +R H    RV                    +  + I     +        G   
Sbjct: 224 LVAAMAERTHARLLRVGQNAACEIRWGNVTSTVQSTQFTIHIPEHAPE-CIQLLASGVPS 282

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V  A  A  +    G+  A + E L  L    GRF  +   +    I   +     S+  
Sbjct: 283 VQAAAFAIAVGYVAGLSLAEMREALADLRPAHGRFNPLVGRNGATIIDDTFNAAPESVYA 342

Query: 372 ILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            L+ + ++ + R I + G     G          G+IA   AD+ I   D          
Sbjct: 343 ALQTLGSLPARRRIAILGDMAELGAASARFHQQAGQIAAQHADLLITKGDQAALAATSAR 402

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
            A   +G        +   A+  A+   L   D+++V  KG
Sbjct: 403 EASATYGYQINTMSVHSAAAVLAAVPTDLGAGDLVLV--KG 441


>gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 426

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 139/411 (33%), Gaps = 39/411 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++      +   L I        K   V +D+R    G +F+A+VG+  D H +I QA  
Sbjct: 1   MLQTTTNTIAKVLKIDYS--VNVKFKGVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQ 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA AI+ + +   Q          PILVV++T+  LS  AS         ++A+TG++G
Sbjct: 59  MGAVAIIANKSVDSQ---------LPILVVNDTQTALSTIASWHLQNIKPIVIAITGSNG 109

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I      +    G  +  +       L T                    +
Sbjct: 110 KTTTKNMLANILSLQAPTLKTQGNLN--NHLGVPMTLLTLE-----------KQHQYAVI 156

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   H    +       TN    HI           AK  ++           
Sbjct: 157 EMGANHLGEISHLRKIVNPDIAIVTNTLDAHIGTFGGFDNLVKAKGEIYS---------- 206

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              +                       +    +     +     +  +++  +       
Sbjct: 207 --KNSKNIINTQSIFTGDVSFTPHGNTKVSGNNGDIFASNIVNNKFDLNIHQQKISITLN 264

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   + NAL A+     +GID  L+ + LE     PGR E + T      I   Y   
Sbjct: 265 LIGIHNIDNALAASACVYPLGIDINLIKQGLEATKAEPGRLEIIHTKQF-RIIDDTYNAN 323

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAI 414
             S  + LK ++  +  +IIV+      G+  +     +G++A   AD   
Sbjct: 324 PYSTIIALKTLQNFSGEKIIVLGTMEELGNYSKMFHFKIGQLAKKSADTFY 374


>gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 475

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 81/478 (16%), Positives = 150/478 (31%), Gaps = 44/478 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIP 61
           L ++       L+ + +    +     ++ +S+ DSR +  G IF A  G   DGHLF+P
Sbjct: 6   LSEIAAATRGRLLLEGTDATPR---TVVDGLSTTDSREVVPGSIFFAKPGETTDGHLFVP 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NI 117
           QA+  GA  +VV     +           P LVV++T   L   A+ +  +        I
Sbjct: 63  QALDSGAALVVVDRELDVAG---------PQLVVEDTVVALGELAADVIARVRALGNLRI 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++  + ++ I ++SG +       +          +T              
Sbjct: 114 VGITGSNGKTTTKNLLRAILEQSGPTIAPRASFN----NEVGAPVTMLEVSE-------- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    + AS  G +  RL G+                          A        
Sbjct: 162 -RTQYLVAEMSASGIG-EIARLVGMARPDIGIVLKVGLAHAGEFGGIEKTLAAKTEMVSD 219

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L +   A++  DD     +  +                     +  +      + +    
Sbjct: 220 LLESDVAVLNLDDPRVASMADKTAAHVLWFGLDDRAAVRASDIRSTSRGTSFVLRLPGAD 279

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE-----KLHVVPGRFEFVGTN 352
                  P+       + ++ A    A      + ++ +             R E +G  
Sbjct: 280 GGDAASRPVRFHVLGEHHVMNALAAAAAAHTLGIGIDRIVGGLEAVQRAERWRMEVLGGA 339

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIAL 407
                I   Y  + +S+   LK +  I     R I V G     G+    +   +G +A+
Sbjct: 340 GGVTVINDAYNASPDSMSAALKTLAQIAGPGERTIAVLGEMSELGEFSGEEHDRVGLLAV 399

Query: 408 DLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  D  +V     R      I      G   + E  +   A     E L   D ++V
Sbjct: 400 RLGIDQLVVVGPPARRMHITAINEGSWDGESLYFESQD--AAYDHLKETLRAGDTVLV 455


>gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 468

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 154/456 (33%), Gaps = 48/456 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +DSR I+ G IF+A+ GN+ DGH FI  AI +GA+ +++           +   +  
Sbjct: 32  SIKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVIL--KDEEMSKFTSFNKDIS 89

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              V +    +   + R          I+AVTG+ GK++    + ++ +R+       G 
Sbjct: 90  FFGVPSPDVAILEASERYLAGLSSLREIVAVTGSVGKTTTKEAIGKVLERTYRVHISRGN 149

Query: 150 ----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                    +     R T    +                  + A++ G      +  +  
Sbjct: 150 YNTLLGCCLTILVAPRNTEFLVLE-----------------MGANAKGEIGEIANRFRPS 192

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           +   T++   H++          AK+   E +        +  D       + +  +   
Sbjct: 193 SSVITSVDPVHLEGFGGIDGVLGAKL---EIVTADCKLLFVNGDSPILNSGIDKLKHRPS 249

Query: 266 RVLSVGYQGKFIHLK-----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +++SVG     I+       ++   H  +++TI            L G+       +A  
Sbjct: 250 KIISVGTSTSCIYRITDSSLRLDGNHYFRKITIDSPFGLKTVESKLWGKQHTLIISLAFA 309

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +    G+    + + L  + +  GR   + +      I   Y  +  S++  + N+  I 
Sbjct: 310 VGCEYGVAPDDIAQGLFVMSLPRGRGAILQSEEGVLFIDESYNASPVSVKAAIDNLCLIP 369

Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             GR I V G     G         +   A   AD  ++      SE        I    
Sbjct: 370 SRGRKIAVLGGMKELGSYANRFHDEILDYAAKAADQVLI----HGSE-----WKGINKNY 420

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
              +   +  + +     +L   DV++V  KG    
Sbjct: 421 KNVLCLQDMEDIVNHLKAILRTGDVVLV--KGSRAY 454


>gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
 gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
          Length = 470

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 93/451 (20%), Positives = 148/451 (32%), Gaps = 49/451 (10%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   V+ DSR + AG +FVA+ G + DGH ++P     GA   + +              
Sbjct: 26  VTGAVAKDSREVVAGGLFVALPGERVDGHDYVPAVTEAGATVSLTTRPVD---------- 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             P +VV +T+  L   A  +  + PE  ++ +TG+ GK+S    + Q+    G +    
Sbjct: 76  GCPCIVVADTQVALGELARYVVAQLPELTVIGLTGSQGKTSTKDLIAQLVAPYGPTVAPT 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +        + LT                       + A   G   +         G
Sbjct: 136 GSFN----NEIGHPLTALQA---------DRDTRYLVAEMGARHLGDIAYLCRITPPKVG 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  HI    ++ A   A        +     A++ ADD     +  R        
Sbjct: 183 LVLNVGYSHIGEFGSRDAIAQA-KGEMIANVAPGGTAVLNADDPRVAAMASRTEQTIRTF 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                        +V     +   T+  +G+ F     L GE  V NAL AA   +A+G+
Sbjct: 242 GEAPEADVRATDLEVDGEG-RPGFTLHADGQSFPVQLQLIGEHNVSNALAAATAALAVGL 300

Query: 328 DSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGR 383
               V + L     V   R E V        I   Y    +S+   LK +  I      R
Sbjct: 301 TPEQVADGLNAAARVSQARMEVVERPDGVTVINDAYNANPDSVRAALKALVAIGRAREAR 360

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
              V G     GD    +   +G++A+ L        D  R     +    I  G     
Sbjct: 361 TWAVLGEMLELGDSSATEHDAVGRLAVRL--------DVNRLLAVGEGAKPIHLGASLEG 412

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                        EA+      L   DV++V
Sbjct: 413 SWGNESAYVATIAEALELLRGELRSGDVVLV 443


>gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
 gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
          Length = 499

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 77/500 (15%), Positives = 160/500 (32%), Gaps = 61/500 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+    I              SDSR ++ G +FVAI G + DGH F+
Sbjct: 10  MGLAEIEQAVHGRLVTAEGISSNGAMA---TSACSDSRQVREGSVFVAIAGERVDGHDFV 66

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115
            +  AQGA A +V    +         +  P +VVD+T + L   A     +      P 
Sbjct: 67  SKVGAQGAVAALVDHEVA--------DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    +  +    G +   +G  +               P+   K  +
Sbjct: 119 TVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFN----------NEIGLPLTALKVNA 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +    +         +G  H+    + +    AK  + +
Sbjct: 169 GTR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVK 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L+P     +   D+  +              L        +   +          +  +
Sbjct: 226 GLVPGGVTVLNANDEHVAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFEL 285

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC---IAIGIDSALVLEHLEKLHVV-PGRF---EF 348
              + +      G   ++N + A         +G+    +   L  +  + P R      
Sbjct: 286 RDAEGECAKVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAI 345

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCGGDRDQGKRPI-- 401
           V   +R   I   +    +S++  L  +    +        I V G   +    +R +  
Sbjct: 346 VKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHE 405

Query: 402 -MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--IEMLN- 457
            +G  A+     A++   +   +  + +   +  G       G+   A+  A  I+  + 
Sbjct: 406 QVGSYAVQGGVNALIAVGSRGDDALDALAEAMAQGGKQV---GDVRCAVDWAHDIDQADA 462

Query: 458 ---------KQDVLVVAGKG 468
                       V+++  KG
Sbjct: 463 LVSRLATEHAGTVVLL--KG 480


>gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 451

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/467 (17%), Positives = 147/467 (31%), Gaps = 34/467 (7%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++   +      ++ +  I  VS DSR I    +F+   G   DGH ++ QA+
Sbjct: 1   MIEVTLEQIKTWIPCEIENEFMDHGIKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA A        L +       + PI+ VD+T + L   A          ++AVTG++
Sbjct: 61  KDGAGAAFYQKGEPLDE-----NIDGPIIWVDDTLEALQHLAKAYLEFVNPQVIAVTGSN 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ + +         G          +N +  P  I                
Sbjct: 116 GKTTTKDMIESVLKPQFKVKKTQGN--------YNNEIGMPLTI-------LQLDIDTEI 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E    G  +  L                             AK +    L  K    
Sbjct: 161 SILEMGMSGFHEIELLSKLAQPDIAIITNIGESHMQDLGSREGIAKAKSEITLGLKPGGL 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            IY  D    E           V         +         +    TI+ +     +  
Sbjct: 221 FIYDGDEPLLEPYANEIQNADLVSFGKNSDNTLVSTIETIKDHGIAFTINHDE---HYEL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ GE  + NA +A  +   + +    +  +L+ + +   R E   T      I   Y  
Sbjct: 278 PILGEHNMKNATIAIAVGKRLNLTYQTIFNNLKNVVLTGMRMEQHHTKDEILVINDAYNA 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI---VTDDNPR 421
           +  S++  +  +  +  GR I+V G   +     + +   + L   D  I    T  N  
Sbjct: 338 SPTSMKAAIDTLSGM-EGRKIIVLGDVLELGPDSQIMHEAVGLYFEDKDIDALFTLGN-- 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   I       +        + + IR+    +   D ++V  KG
Sbjct: 395 --EAAHISHTGKAFVKKSEAFKEKADLIRSLKGYVQANDKVLV--KG 437


>gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
 gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
          Length = 509

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 137/447 (30%), Gaps = 47/447 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L   D  E+    S+  +   ++++   +  DSR +  G +F+A+ G + DGH +  +AI
Sbjct: 4   LSIADIAEITGG-SLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAEKAI 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFASRLYG 111
            QGA A++ +    +       +           +   +         + LS  A  +  
Sbjct: 63  EQGAVAVLAARPVGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQALSDIAREVTR 122

Query: 112 KHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           +         + VTG++GK+S    +  I +  G +    G  +                
Sbjct: 123 RLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLPY--------- 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL            + A   G  +H         G   N+G  H+    +++   
Sbjct: 174 ----TALRCDEHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIA 229

Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV--LSVGYQGKFIHLKKVC 283
            A  ++        +   A++ ADD +   +  R                    +   + 
Sbjct: 230 QAKGELVEALPSAAEGGVAVLNADDPFVAGMAPRTSAKVVYYSANKPPASDAQYYASDIQ 289

Query: 284 AIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   +              + G+ QV NAL AA   I  G+D  +V   L     
Sbjct: 290 LDDVARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQN 349

Query: 342 -VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGD--- 393
               R +          I   Y    +S+   +             R I V G  G+   
Sbjct: 350 ASEHRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGG 409

Query: 394 RDQGKRPIMGKIALDL-ADIAIVTDDN 419
                   +G++      D  +   DN
Sbjct: 410 EAVAAHRALGEVLSKYHVDHLVAVGDN 436


>gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 481

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 135/381 (35%), Gaps = 20/381 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +DSR I AG +FVA+ G + D H F+    + GA A ++S+             N
Sbjct: 32  ITRVGTDSRQIDAGELFVALAGERFDAHDFLSDVASSGAGAALISNKDKC-------PKN 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + +++TR  L   A          +  VTG++GK++V   +  I + +   S  +  
Sbjct: 85  LPAVCIEDTRAALGQLAKAWRVTRHIPLALVTGSNGKTTVKEMIASIFKAAVGESHTLVT 144

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +++                 A+  L        ++ A                    
Sbjct: 145 KGNLNNDIGLPLTLLKLRPTDQLAVVELGMNHPGETALLADIAQ----------ANIALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T  A       +    LP++  A+   D  ++    K A +       
Sbjct: 195 NNAQREHQEFMATVAAVAQEHADVIRA-LPQDGIAVFPGDSEFTDLWRKAAADRKVLDFV 253

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +              + N  ++ ++ E           G   V NAL A+ + IA GI  
Sbjct: 254 LSSTQTNASSAVGGKLLNDGRIEVNTENGSIQIQLNTLGNHNVRNALAASAVAIAAGISL 313

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387
             + E LE    V GR +    ++    I   Y    +S+   +  ++   +   IV+  
Sbjct: 314 KKIQEGLESFQPVNGRMQAKTIDANHTLIDDSYNANPDSVRAAIDALKQSGNNAWIVLGD 373

Query: 388 FGCGGDRDQGKRPIMGKIALD 408
            G  GD+       +G  A +
Sbjct: 374 MGEVGDQGPEFHQEVGAYAAE 394


>gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
 gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
          Length = 451

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 160/473 (33%), Gaps = 50/473 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +QD++      L+   +  P       IN +S+DSR +    +FV IVG + + H F+
Sbjct: 4   MTIQDILAATGGTLLCGDASMP-------INRLSTDSRDVGPHTLFVPIVGERVNAHKFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  G  A +       +          PI+ V +T K +   AS    K    I+ +
Sbjct: 57  ESALKDG-GASLTQEHEQAEGPH-------PIIKVPDTLKAMQQIASFYRNKMSLPIIGI 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG+ GK++    +  + +        +G   S +      +RLT+   I +         
Sbjct: 109 TGSVGKTTTREMIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGV--------- 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  S  G      + I+  A   TN+G  HI+   ++      K+ +   L  
Sbjct: 160 -----LEMGMSEPGQITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPE 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   +D   K +    +           +      +    IH +   T   E   
Sbjct: 215 NGVLYLNGDNDMIRKHI---GYVTHPYEFFGFSEDCSYRAEGTEEIHGQTHFTFVHENMK 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  + G+  V NAL A  L +A  +    +   L          +        G   
Sbjct: 272 EPVILNVLGDHNVSNALAAIALGLAYEVPMETIKRQLATFSG-----QRQNILKIHGYTV 326

Query: 360 VDYAHT--SNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
           +D A+    +S++  LK +      GR I V       G         +G+     AD  
Sbjct: 327 IDDAYNASPDSMKAGLKILSDYKDSGRKIAVLSDMLELGPDSPDYHREVGEFLGT-AD-- 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVV 464
            +TD        +K              K   +  E I    + L + DV+++
Sbjct: 384 -ITDLYITGTLSKKYAEAAQKKNLSLKTKWFSSNDELISYLKDYLKENDVVLI 435


>gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
 gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
          Length = 453

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
 gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
          Length = 493

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 77/500 (15%), Positives = 160/500 (32%), Gaps = 61/500 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+    I              SDSR ++ G +FVAI G + DGH F+
Sbjct: 4   MGLAEIEQAVHGRLVTAEGISSNGAMA---TSACSDSRQVREGSVFVAIAGERVDGHDFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115
            +  AQGA A +V    +         +  P +VVD+T + L   A     +      P 
Sbjct: 61  SKVGAQGAVAALVDHEVA--------DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPF 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    +  +    G +   +G  +               P+   K  +
Sbjct: 113 TVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFN----------NEIGLPLTALKVNA 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +    +         +G  H+    + +    AK  + +
Sbjct: 163 GTR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVK 219

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L+P     +   D+  +              L        +   +          +  +
Sbjct: 220 GLVPGGVTVLNANDEHVAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFEL 279

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC---IAIGIDSALVLEHLEKLHVV-PGRF---EF 348
              + +      G   ++N + A         +G+    +   L  +  + P R      
Sbjct: 280 RDAEGECAKVNLGICGMHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAI 339

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCGGDRDQGKRPI-- 401
           V   +R   I   +    +S++  L  +    +        I V G   +    +R +  
Sbjct: 340 VKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHE 399

Query: 402 -MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--IEMLN- 457
            +G  A+     A++   +   +  + +   +  G       G+   A+  A  I+  + 
Sbjct: 400 QVGSYAVQGGVNALIAVGSRGDDALDALAEAMAQGGKQV---GDVRCAVDWAHDIDQADA 456

Query: 458 ---------KQDVLVVAGKG 468
                       V+++  KG
Sbjct: 457 LVSRLATEHAGTVVLL--KG 474


>gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 459

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 142/420 (33%), Gaps = 35/420 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + ++      +          QW E +++ V+ DSR ++ G +FV + G + DGH F+
Sbjct: 3   MNIAEIARAVDAQ------NDIEQWSEIEVSGVAFDSRKLKNGDLFVPLQGAR-DGHEFV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A + ++  S +D         P +VVD+    L         K    ++AV
Sbjct: 56  ATAFQNGASATLWAADRSYED------DGYPRIVVDDPLAALQQLGKYYLHKINPLVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G++GK++    +  I       +      +                I +   L  + S 
Sbjct: 110 SGSNGKTTTKDMIASILSTQMNVTKTYANFNN--------------AIGVPVTLLNMESN 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V     SH  +   L  +     +   +  +        +             L +
Sbjct: 156 TEAVVVEMGMSHFGELDELSKLVTPDIAVLTMIGEAHIEFFGSRDRIADAKMEITHGLRE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+   +E  K                 +    +      + +V +  + +  
Sbjct: 216 DGTFVYNGDEPLLRERAKDLKQGQKTFGRQLDNDIYATSVEQSDHDLRFKVNLWPDEE-- 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ GE+ V NA+ A  +   + +  + +   L  + +   R E++        +  
Sbjct: 274 -FTIPMIGEYNVNNAMAAMMVGHLLHVTPSHLKIGLANVELTENRAEWLTGQQGEKILSD 332

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIV 415
            Y     +++ +L+ +  +  +GR ++V G     GD        +  +I         +
Sbjct: 333 VYNSNPTAVKEVLETLNELPETGRRLIVLGDMLELGDASAKLHAGLATEIDHQHFQKVFL 392


>gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
 gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
          Length = 465

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 163/458 (35%), Gaps = 44/458 (9%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR  QAG ++VA  G   DGH F+  A  +GA A++V          
Sbjct: 18  GNDVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRGAVAVIVEHEVDEA--- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139
                    +VV+++ + L   A     K       +++A+TG+ GK++    + QI   
Sbjct: 75  ------VTQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKTTTKDLLLQIMSE 128

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +             + +N +  P  + LA       +     + + AS  G   +  
Sbjct: 129 DGPTV--------APKLSFNNEVGLPLTVLLA-----DETTRHLVLEMGASGPGHITYLT 175

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +         +G  H+      +    AK  L +       P I+  DD   + +   
Sbjct: 176 DIVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKG-TRPGGPVILNTDDPNVEAMAPL 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           A     R  + G +   + ++ V     ++   T+     +      + G   V NAL A
Sbjct: 235 ATGRVIRFSASGNERADVVVRDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILK 374
           A   + +G+    V   L +     P R +       G     I   Y    +S+   + 
Sbjct: 295 AAGALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIA 354

Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            + +I    + I V G   +  +  + +  ++   +AD  + T     ++         +
Sbjct: 355 ALASIGRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGAD-----AHYYL 409

Query: 434 HGIPGF---IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G P         +  +A R A+E      V++V  KG
Sbjct: 410 EGAPEVPHREVAADPQDAARLALEHAEDGAVVLV--KG 445


>gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
 gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
          Length = 453

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWMHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc fallax KCTC 3537]
          Length = 451

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 72/387 (18%), Positives = 150/387 (38%), Gaps = 38/387 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++  +   E++N     P Q ++   I+ V+ DSRH++ G +F+A+V    DGH +I  A
Sbjct: 2   NITLEKLAEVLNA----PFQGKDSVAISGVAFDSRHVKEGQLFIALVAEN-DGHDYIENA 56

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A GA A++V S + L++       + P ++VD+T   +         +    ++A+TG+
Sbjct: 57  LANGAHAVLVDSQHQLKE-------DWPAVIVDDTLVAMQKLGQWYRHQVNPKVVAITGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++      +I  +   +                  L+ P    +             
Sbjct: 110 NGKTTTKDMAAEIANQQYRTFKTPEN-YNNEIGVPMTLLSMPESTEVLI----------- 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G        ++      T +G  HI++ +T++    AK+      +     
Sbjct: 158 -VELGMDRPGQLTVLSHLVEPDIAIITMIGEAHIEFFKTRRNIAKAKLE-----IINGLK 211

Query: 244 AIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           A         + ++ +   +    V + G     ++   +   +N+ Q  I+ +     F
Sbjct: 212 AEGTLIIPNDEPLLTQEISHIEQHVKTFGTIDADVNATDISVENNQSQFNINQQ----KF 267

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G + + NAL A      + ID     + L    +   R E + T      I   Y
Sbjct: 268 AIPMLGRYNIMNALAAITAGNLLHIDLKNAQKALLDFDLTKNRTEILHTTHGVTIISDVY 327

Query: 363 AHTSNSLEMILKNI--RTITSGRIIVV 387
                +++ +L  +  R +   R +V+
Sbjct: 328 NSNPTAVKAVLATLVSREVQGKRYVVL 354


>gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
          Length = 453

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 149/485 (30%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + +I +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQAVGAKNDVSIFEDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   N+ 
Sbjct: 54  FIETAFENGAVVTLTEKEVA----------NHPYILVDDVLSAFQALAAYYLEKTAVNVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +              +     AK ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D   +  +                G+   L+    I  K  +T +    
Sbjct: 209 MASGSLLLAPADPIVEAYLPADKKVV-------RFGQGAELEITDLIERKDSLTFNANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + D   P+ G++   NA++AA + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQDLDLPVTGKYNATNAMIAAYVALQEGVSEEQIRLAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANKGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
 gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
          Length = 453

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKN 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
 gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
          Length = 481

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 87/447 (19%), Positives = 162/447 (36%), Gaps = 35/447 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ Y    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGYFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE      + + + +P  I
Sbjct: 374 RGRRIAVLGDMVELGRQTGKLHADLARPIVDAEVNTLFIGGSE-----MSVLKNALPVEI 428

Query: 441 EKGNRI---EAIRTAIEMLNKQDVLVV 464
           +   R    E +   ++ +   DV++V
Sbjct: 429 QIEYRQSTDELLPLVVKAVRPGDVVMV 455


>gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           cholerae LMA3894-4]
          Length = 453

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Paenibacillus polymyxa SC2]
 gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus polymyxa SC2]
          Length = 467

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 161/479 (33%), Gaps = 48/479 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI- 64
            +   ++ +          + +  +  V +DSR  Q+  +FV +VG + DGH ++ Q + 
Sbjct: 2   KRTIGQIASMCGGTLHAEADAERMVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVS 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A +    +               + V++T + L   A+    +   +++ +TG++
Sbjct: 62  ERGATAYLWQKDHGA-------PPTVNAIEVEDTLEALQHLAAAYLRETGVSVVGITGSN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    V          +  +G T  +     +       P+ +         Q    
Sbjct: 115 GKTTTKDIV----------NALLGTTFKVHKTEGNYNNHIGLPLTVLSM-----PQDTDI 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E    G  + RL                     Q       A+ +L      K    
Sbjct: 160 LVLEMGMSGRGEIRLLANIAQPDVAVITNIGESHLLQLGSRTEIARAKLEIASGIKPGGL 219

Query: 245 IIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +IY  D      +    +     G  + + G                +  + I+ +    
Sbjct: 220 LIYNGDEPLLPQVLAEPETVKPEGLELFTFGLAADNDDYPTEITSDGEGSLFITAQSGQE 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PL G+  V N L A  +     +D+  + + L  L +   R E V  +     +  
Sbjct: 280 AFRLPLLGQHNVVNGLAALAVARHFNVDADHIRKGLSSLKLTGMRIEVVKCSDGLTVLND 339

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y  +  S++  ++ +    + GR I V G     G  ++     +G+ A      A+ T
Sbjct: 340 AYNASPASMKAAIQTLSAYKTGGRKIAVLGDMLELGAEEKQFHEEIGRFAAKHNIEALFT 399

Query: 417 DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                      + A I  G              ++ + I+     L+  D+++V A +G
Sbjct: 400 --------YGALGASIAQGAQGTMPTANVHAYTDKQKLIQHLRSYLHADDIVLVKASRG 450


>gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
 gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
          Length = 456

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 70/473 (14%), Positives = 151/473 (31%), Gaps = 44/473 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++      E          +W +  I  V  DSR I++G +F+ +V    DGH ++
Sbjct: 3   MQLAEVARALNIEA-------KEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +       +D S  I  +  +L V +T   L         K    ++A+
Sbjct: 55  EAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++       +              +  +       + +  P             
Sbjct: 110 TGSNGKTTTKDMTAAVLATQFNVHKTFANFN--NEIGVPMTILSMEPNT----------- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +    +G     L  +     +   +  +        + +           L +
Sbjct: 157 EVLVVEMGMDRYG-QLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +I  D+       K          S+           + +   K    ++    + 
Sbjct: 216 DGELVINGDEPLLTTKAKEVSQEVLTFGSLDNNDMC--AMDIVSDATKTSFKVAT-WPEV 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF   + G + V+NAL A  +     I    + + L    +   R E++   +    +  
Sbjct: 273 DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSD 332

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIV 415
            Y     +++ +L     + + G+ I+V G     G++       + +    D  D   +
Sbjct: 333 VYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSNLAQAINPDRIDSVYL 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLVV 464
                  E    +  ++            + + + T    L       D++++
Sbjct: 393 C-----GELMGHLAEKLREKFDETQIHHYQKDDLLTLTSDLKNELMSDDIVLL 440


>gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
 gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
          Length = 463

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 138/391 (35%), Gaps = 29/391 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + ++N +S D+R I+ G +FVA+   + DGH F+ QA+ +GA A +VS           
Sbjct: 19  SDWQVNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQALEKGAGAALVS------HIPEG 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  + P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G +  
Sbjct: 72  VAEDAPLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLTPQGRTHA 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +   +               P+ LA+  +         + +  +  G         +  
Sbjct: 132 AVASYNNHWGV----------PLTLARMPAD---TEYAVIEIGMNHPGEIAPLSRQARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++  +        K     E L     A++ AD   +  +   A +AG 
Sbjct: 179 VALVTTVAAVHLEAFEDVAGIAREKA-AIIEGLEPGGIAVLNADLEETPVLRDVAQDAGV 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G       L++     +  +  I    ++F       G     NA  A     A+
Sbjct: 238 ATRWFGQTSDDYCLQEAQLSGDVTRARIVQAEREFSAEIQSLGVHFAMNATGALAAIEAL 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSL---EMILKNIRTITS 381
           G D  L L  L+    V GR          G    +D A+ +N       +     T T 
Sbjct: 298 GADLELALAGLQGWSPVKGRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTVLAATPTE 357

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           GR I          +   P   ++   LAD 
Sbjct: 358 GRRIAYLADM----KELGPEEARLHAGLADH 384


>gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 456

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 146/416 (35%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +   + VS+DSR IQ G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V              ++ P LVV +TRK L+   +        + + A
Sbjct: 56  EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+SGK++V   +  I +  G      G  +            TP              
Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELTPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G     +   K      TN G  H+           A      E L 
Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      +H   +          TI+    
Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 VAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    SGR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-SGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388


>gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 144

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST 152
           K+SV      I  + G + +     + 
Sbjct: 111 KTSVKEMTAAILSQCGNTLYTASNFNN 137


>gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Brevibacillus brevis NBRC 100599]
          Length = 460

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 154/445 (34%), Gaps = 29/445 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
            IN   I         ++ V  D+R +  G +FVA+ G   DGH F+ QA  QGA A +V
Sbjct: 10  AINAEGILIAGSPGLALSSVHFDTRELTVGSLFVALTGGARDGHDFLLQAAEQGAVAALV 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S   + +     + ++  +++V++T +     A+          +A+TG+ GK++V   V
Sbjct: 70  S---NQEKIPGDLPNDFGLILVNDTLRGFQKLAAAYRKSFSFPRIAITGSIGKTTVKDIV 126

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                     +  +   S +    ++       P+ L +      +  +      A    
Sbjct: 127 ----------AHVLASRSPVYKTYKNFNNHIGVPLSLLQMEENHQAAVLELGMNHAGEID 176

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L    +   +      T +G  HI+Y  T++    AK  L           +    D+  
Sbjct: 177 LLASLV---QPDISVITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLL--NKDSEY 231

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             ++   +       SV  +      +        +       G+ F+   PL G   V 
Sbjct: 232 LRLIAHLYPGELMYYSVNEKADIWAEQIETVEGGTRFKVYLASGEYFEAFLPLHGRHSVL 291

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +   +G+D+  +   L  + +   RFE +        I   Y  +  S+E  +
Sbjct: 292 NALPAVAIAKRLGMDTEQIAYALSTVQLSAMRFEQINGKHATVYISDAYNASPVSMEAAV 351

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +           IVV G   +     R +   +   + DIA       R E    I  + 
Sbjct: 352 RTFAELYPECARIVVLGDMYELGPDSRAMHAGVGASIQDIA------ERFELLVTIGEDS 405

Query: 433 I----HGIPGFIEKGNRIEAIRTAI 453
                      +    + EA+   +
Sbjct: 406 RHLHDAYAGKKLHFATKAEAMAALL 430


>gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
 gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
          Length = 462

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 151/412 (36%), Gaps = 34/412 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M    +   +F E++    I        K + VS DSR ++   +F AI G + DGH F+
Sbjct: 1   MNEALMTIGEFAEML-GSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                         +  +    +  +  + P ++V +TR+ L   A +   K    ++AV
Sbjct: 59  QA---------ASDAGAAAAVVTHFVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            G++GK++    V  I +        +G    +++            + L          
Sbjct: 110 AGSNGKTTTTQMVLSIIKERFQEGAWVGTEGNLNNELG---------VSLMLW---KLRP 157

Query: 181 GVTHVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                  E   + + + R  +  I    G+ TN  RDH ++  + +        +F + L
Sbjct: 158 EHQAACFEVGMNHIGEMRPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQ-L 216

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P++  A+I A D ++ E  K       RV++ G     ++  +V          +     
Sbjct: 217 PRQGVAVINAADPFAVEWRK--MAGNNRVVTFGTPDSDVYACEVEGTA----FRLVTPIG 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    +PG+  + NA+ AA +  A+G D   + + LE    V  R E V  +     I
Sbjct: 271 QIDIELKVPGKHNIVNAVNAAAVLFAMGRDLCDIKKGLENFEAVSHRGEVVTLDDGSVVI 330

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
              Y    +S+   +  +      +I V    G  G +       +G+    
Sbjct: 331 DDSYNANPDSMNAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRR 382


>gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 493

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 159/502 (31%), Gaps = 65/502 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+    I              SDSR ++ G +FVAI G + DGH F+
Sbjct: 4   MGLAEIEQAVHGRLVAAEGIASNGAMA---TSACSDSRQVREGSVFVAIAGERVDGHDFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115
            +  AQGA A +V    +         +  P +VVD+T + L   A     +      P 
Sbjct: 61  SKVGAQGAVAALVDHEVA--------DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPF 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    +  +    G +   +G  +               P+   K  +
Sbjct: 113 TVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFN----------NEIGLPLTALKVNA 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +    +         +G  H+    + +    AK  + +
Sbjct: 163 GTR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVK 219

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L+P     +   D+  +              L        +   +          +  +
Sbjct: 220 GLVPGGVTVLNANDEHVAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFEL 279

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAG---LCIAIGIDSALVLEHLEKLHVV-PGRF---EF 348
              + +      G   ++N + A     +   +G+    +   L  +  + P R      
Sbjct: 280 RDAEGECAKVNLGICGMHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAI 339

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCGGDRDQGKRPIMG 403
           V   +R   I   +    +S++  L  +    +        I V G   +    +R +  
Sbjct: 340 VKPEARFTLIDDSFNANPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHE 399

Query: 404 KI----ALDLADIAIVTDDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTA--IEML 456
           ++         D  I      R +D  + +   +  G       G+   A+  A  I+  
Sbjct: 400 QVGSYAVQGGVDALI--AVGSRGDDALDALAEAMAQGGKQV---GDVRCAVDWAHDIDQA 454

Query: 457 N----------KQDVLVVAGKG 468
           +             V+++  KG
Sbjct: 455 DALVSRLATEHAGTVVLL--KG 474


>gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 450

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 162/473 (34%), Gaps = 51/473 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K+  E+    ++ P     + I  V++DSR + +G  FVA+ G + +G  F+P AIAQGA
Sbjct: 7   KEIAEITGG-ALLPGSDGSQTIQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQGA 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++V            I  + P ++V +T   L    +    +    +LAVTG+ GK++
Sbjct: 66  GGVLVD-----------IPVSAPGVLVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTT 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  I  +SG      G  +             P                   + + 
Sbjct: 115 VKEVLTAILNQSGPVLATRGNQNNHVGVPLTLARLGPE-------------HRYAVLEMG 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +  G +   L G+     +  N             A   A        L      I+  
Sbjct: 162 MNHPG-ELTLLSGLARPTLALINNAAPAHLEGLGSVAAIAAAKGEILSGLDNRGLTILNG 220

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD ++    +RA     R        +     +           +      F    PLPG
Sbjct: 221 DDPFADFWAERAPGEVWRFSLEHRPTRVRGHWRAHEQGGGHL-EVRAPQGQFTLEIPLPG 279

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +    N L A    +A+ I    +   +  L  +PGR ++         +   Y     S
Sbjct: 280 QHNGRNVLAATTAALALDIPIPQIQRAVAGLQTIPGRLQWRSGPHGSRMLDDTYNANPAS 339

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQ------------------GKRPIMGKIALDLA 410
           LE  L+ +     G+ I+V G  G+                      +   +G +A + A
Sbjct: 340 LEAALRVLAA-QPGQRILVLGDMGELGPEAALYHHQAGLLARQLGVERLYTLGSLAEEAA 398

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQD 460
           + A  T+    SE P  + A +   +      + KG+R   +   ++ L + D
Sbjct: 399 N-AFGTNAEAFSELPP-LLAALHRRLDEETVVLIKGSRAARMERVVQALGEGD 449


>gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
 gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
          Length = 457

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 81/408 (19%), Positives = 141/408 (34%), Gaps = 32/408 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L      EL+ +         +     V +DSR+I  G +F+A+ G + DGH ++
Sbjct: 2   MRLSELAAAVGGELVGE---------DVLFTSVGTDSRNIVPGQLFIALRGERFDGHAYV 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  G          +    +         +VV NTR  L   A+    +    + A+
Sbjct: 53  LQALQSG---------AAAALVAEAQPGMAAGVVVKNTRLALGQLAAVWRNRFSIPVAAI 103

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   V  I +               ++                  L    S 
Sbjct: 104 TGSNGKTTVKEMVASILRAEA---------GDSNAVLATRGNLNNDIGLPLTLLRLRPSH 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +  +  G  ++     +       N    H+    + +    AK  +FE  L  
Sbjct: 155 KYTVAEMGMNHFGEIRYLSQMARPTVALVNNATSAHLGGLGSVEGIARAKGEIFEG-LAL 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E  A+I ADD Y+    + A       L+ G               +   V +       
Sbjct: 214 EGMAVINADDLYAPLWTELAGEHDI--LTFGLAKMADVTANYELRADTSYVYMKSPIGGI 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   + G   V NAL A+ + IA+G     + + LE    V GR +      +   I  
Sbjct: 272 AFNLQVAGLHNVRNALAASTVAIAMGARPESIAKGLEAFDGVDGRLQHRAGIGQALVIDD 331

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            Y     S+   +  +      R++V+   G  G+        +G+ A
Sbjct: 332 TYNANPASMRAAIDVLAARPGKRLLVLGDMGELGETAAAMHTEIGQYA 379


>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 829

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 157/453 (34%), Gaps = 44/453 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ +  V+ DSR +  G +FVA+ G   DGH F+ QA   GA  +V+      +   + 
Sbjct: 22  PEQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAEGAGASLVVLRRD---RCPDSG 78

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  L+V +    L   A+     H   ++AVTG++GK+ V + +  +       + 
Sbjct: 79  PGPGCAHLLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKTVVKTALTALLAGRFRVAS 138

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KL 204
             G          ++++  P  +  A   +      +       S+ G +  RL+ I + 
Sbjct: 139 SPGS--------WNSQVGVPLAVLTAPPGTE-----LGVFEAGISAPG-EMERLEAILQP 184

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G   N+G  ++    ++      K+RLF+ +           DD     +        
Sbjct: 185 DHGVLVNVGLANLGSFGSRAVTAREKLRLFQGMDAHSWVIAP--DDPLVNAL-------P 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                +        L    +  N   + + + G              V + L+A      
Sbjct: 236 LPCRRIHPGAGPPRLLGQRSRGNGLLLQLDLGGCQAQVTVHTRSRPLVDDLLIALTAAHH 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITS 381
           +G+ +A + E L+     P R E   T      I     D   +  +    +        
Sbjct: 296 LGVPAAEMAEVLQDYTFGPTRMETWRTPEGITIINDTASDDPLSVQTALATVAAFPE--G 353

Query: 382 GRIIVVFGCGGDR---DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
           GR + VFG  GD    +Q +  ++G++A +     ++   +P         A   +G   
Sbjct: 354 GRRLFVFGGMGDLGPCEQREHALIGRMAAEQGFSGLLLLPHP----ARSHTAAAWNGCHP 409

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E  +         +M    D +++  KG
Sbjct: 410 AQAAQELADTAALRERIRQMAEPGDTVLL--KG 440


>gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/11023]
          Length = 450

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 163/446 (36%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  + +A             + +  S     ++ L+ I+   G
Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++   H  +   + A    + +               +   + +   K+   A    
Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAAERFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    + + V IS    D +     P      N ++A  L     +
Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +  + L +   RFE       G R+  D Y  + +++   L  +      G+II
Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G         + + A+  A I     +  +      I  +    I  +   
Sbjct: 356 FILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++A++  ++     DV+++  KG
Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434


>gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 452

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 144/398 (36%), Gaps = 29/398 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K   +L  Q         +  I  VS +S  I+   +FVAIV    DGH FIP A++ GA
Sbjct: 3   KSLKQLATQAG-LEYIGEDVSIQTVSINSNEIKQDALFVAIV-ANRDGHDFIPSALSYGA 60

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A++VS    +         N P +V  NT K L   A          I+++TG+ GK++
Sbjct: 61  KALLVSKKQDI---------NIPQVVCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKTT 111

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  +    G                    L TP  +  A             +   
Sbjct: 112 VKEMIVTL--LGGKKVHFTQGNFNNYLGVPMTVLETPQDVDFA------------VIETG 157

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +   + I+      TN+G  H++  +T       K  L + L       +   
Sbjct: 158 TSVAGEIKAAAEIIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIV--N 215

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D           +      S+  Q   I +     I     V I +  K++ +  P  G
Sbjct: 216 LDDERIPAYADKLDCNKITCSMSNQDADIIILDYQVIPELYDVKIRIFDKEYSYQLPNIG 275

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N+++A    +A  ++    L++ + +    GRF     N +   +   Y  ++ +
Sbjct: 276 KHNLSNSMLAIASVVAARLEPNDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGA 335

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK 404
           ++  + ++      ++I +      GD  Q     MG+
Sbjct: 336 VQAAIADLAEFDGKKVIAITSMRELGDEGQNYHRKMGQ 373


>gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 417

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 137/411 (33%), Gaps = 48/411 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++      +   L          +  +V +D+R    G +F+A+ G+  D H +I QA  
Sbjct: 1   MLQTTTSTIAKILKTDCT--TNVEFKDVCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQ 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA AIV +   + Q          P LVVD+T+  L+  AS         ++A+TG++G
Sbjct: 59  MGAVAIVANKPVNNQ---------LPTLVVDDTQIALNTIASWHLKNIKPIVIAITGSNG 109

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I      +    G  +  +       L T                    +
Sbjct: 110 KTTTKNMLANILNLQAPTLKTQGNLN--NHLGVPMTLLTLE-----------EQHQYAVI 156

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   H    +       TN    HI           AK  ++           
Sbjct: 157 EMGANHLGEIAHLCSLVNPNIAIVTNTLDAHIGEFGGFDNLVKAKGEIYSN--------- 207

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                          +    +    G            +     +  +++  +       
Sbjct: 208 ------------NSHNIVNTQDTFTGDVSFGKGGDIFASKLVNNKFDLNIYKQKISVTLN 255

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   + NAL A+    A+GID  L+ + LE      GR E + T      I   Y   
Sbjct: 256 LIGTHNIENALAASTCAYALGIDINLIKQGLEVTKAEHGRLEVINTKKF-RIIDDTYNAN 314

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAI 414
            +S    LK ++  +  +I+V+      G+  +     +G++A   AD   
Sbjct: 315 PHSTTTALKALQDFSGEKIVVLGAMRELGNDSEELHLKIGQLAKKSADTFY 365


>gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
 gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
          Length = 481

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          I   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTIPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112]
 gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
          Length = 452

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQDL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +       N   V I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRVTSNSFAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     N +   +   Y  ++ +++  ++++      R+
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLDEFDGKRV 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           I +      GD  +     MG+       D   +
Sbjct: 352 IAITSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 479

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 155/485 (31%), Gaps = 62/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + +  IN++  DSR I AG +F+ + G + DGH 
Sbjct: 23  MKL------TLHEIAKIVGSKNDVAAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHD 75

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A               + ++   ++VD+  +     A+    K   +++
Sbjct: 76  FIQTAFENGALATFTEKD---------LPADQAHILVDDALEAFQKLAAYYLEKTGVDVI 126

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G          +N +  P         +   
Sbjct: 127 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +E     +    L        +                    A+ ++  +  
Sbjct: 172 PDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 231

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   ++   D      +                G    L        K  +T S    
Sbjct: 232 MPDGSLLLVPSDPIVDPFLPSNLEVV-------RFGDGAELTVSELTEFKDHLTFSTNFL 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    +    +
Sbjct: 285 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 344

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411
              Y     ++++IL+    I     G+ I V       G++       M       A D
Sbjct: 345 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 404

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
             I        ED  ++        P             ++ +A ++   E L + D ++
Sbjct: 405 TVIF-----YGEDIAELSQLASQIFPLGHVYYFKKTADEDQFDAMVKHIKESLGEHDQIL 459

Query: 464 VAGKG 468
           +  KG
Sbjct: 460 L--KG 462


>gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
          Length = 463

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 158/471 (33%), Gaps = 39/471 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         ++ + +               S DSR I AG +F A+ G + DGH ++
Sbjct: 1   MKL------TLGQIADWIHAEGDFDSTALAQGYSIDSRTIGAGELFFAVRGERVDGHDYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPE 115
             A+A GA A VVS    ++           +L V +       + +   A+R+  +  +
Sbjct: 55  ETALADGAVAAVVS----MRWLKPATVEEGKLLRVPDEDEDCVLQSMQKLANRVRREWGK 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ VTG++GK++    + Q+           G  +             P          
Sbjct: 111 RIIGVTGSAGKTTTKECIAQVLSAKFHVLKSEGNLNNGFGMPLQLLKLEPE--------- 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V  + +  +  G  +      +      +N+   H+++                
Sbjct: 162 ----HEVAVIEMGMNHAGEIRALAKIAEPDWAVVSNVAPVHLEHFPDGIEGIARAKYELV 217

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTIS 294
           E LP +  AI+  DD       K     G  VL     G  +   ++     +  +  + 
Sbjct: 218 EALPADGIAILNGDDERVAAFGK--GMRGRTVLYGTLPGLTVRAVEIEEAGLDGTRFRVG 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           + G+       L G   V NAL A  + +  GID       LE++     R E +  +  
Sbjct: 276 IVGRVQKIHLRLMGRHNVLNALAAVAVGLQSGIDLKDCCLALEQMRPTEKRGEVIERHGA 335

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLADI 412
                  Y     +LE +++ +R   + R IV+ G   +       +  +  IA+   D+
Sbjct: 336 KIINDC-YNSNPRALEAMVEALRKTKATRRIVMAGEMLELGPEGAALHRECGIAMAGMDV 394

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +      R      +      G+           A     E L + DV++
Sbjct: 395 VV----GVRGLAASLVEGAESEGVE-ANFVETPEAAGEWLRENLREGDVVL 440


>gi|289612968|emb|CBI59981.1| unnamed protein product [Sordaria macrospora]
          Length = 88

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           MG++    AD+AIVTDDN R+ED   IRA+++ G P   E G+R  AIR A +M    D+
Sbjct: 1   MGEVVATHADVAIVTDDNSRTEDAATIRAQVLEGAPNATEIGDRRAAIRAACDMAQAGDI 60

Query: 462 LVVAGKGHETVHIVTN 477
           +++AGKGHE   IV +
Sbjct: 61  VLIAGKGHEQGQIVGD 76


>gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
 gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
          Length = 513

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 143/407 (35%), Gaps = 31/407 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW----IFVAIVGNKEDGHL 58
           L  L+     ELI       +   E  I+++  DSR I+        F+A+ G   DGH 
Sbjct: 6   LTTLVKVTDGELIVPAIQTALSLDELVIDDLVIDSRAIKEHSDKCSAFLALKGPNFDGHR 65

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  Q I QG + ++V    S         ++T  L+V +TR  L   A+ +  +     +
Sbjct: 66  FAEQVIKQGCQLLIVDHHLSAV-------TDTAQLIVSDTRIALGKIAAFVKKEVAPKTV 118

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG+SGK++V   V  I  R G      G  +               P+ L       +
Sbjct: 119 GITGSSGKTTVKEMVAAILSRLGKVLATNGNFN----------NDIGVPLTLL---RLDN 165

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S     + + A+  G   +     +       N+   H++          AK  +F   L
Sbjct: 166 SHDFAVIEMGANHMGEIAYTTALTQPDVAVINNIAAAHLEGFGDLCGVARAKGEIFSG-L 224

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   A+   D  Y+ +   R  +   R  S   +      K     +     T+  E  
Sbjct: 225 GENGVALYNKDTKYTSKWQWRLTDKTVRTFSCVNKANCYSEKVSLDKNGCASFTLQSEQG 284

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-----FEFVGTNS 353
                  +PG+  V NA+ AA + +  G     +   L ++  V GR      E   T  
Sbjct: 285 SCVMTLTVPGKHNVCNAVAAAAIALEFGASLEDIQLGLAQMQPVKGRLNLHQLENKKTGC 344

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
               I   Y     S +   + + +   G+ +++ G  G+     R 
Sbjct: 345 NVKLIDDSYNANLESAKAAAQLLSSY-PGKQLLILGDMGELGSEARS 390


>gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 470

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 159/477 (33%), Gaps = 42/477 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L       ++    + P   R   I  V+ DSR  + G +FV + G   DGHL++ +
Sbjct: 6   LPALSLDQLASIVGARLVAPSGER-PPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGE 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNT----PILVVDNTRKFLSLFASRLYGKHP-ENI 117
           A  +GA A +V      +  SA ++        +LVV +T + L                
Sbjct: 65  AFQRGASAALVQETVFSEAGSALLKHVVQTRGALLVVPDTLEALQTLGEWYLSSLRVPIR 124

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG+SGK+S    ++ +        +              + L       +      +
Sbjct: 125 IGVTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGI 184

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V                +K      T +G  H++   T++     K ++F   
Sbjct: 185 DHVGEMDVLARI------------VKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSS- 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +       +D     V+                  F   +            + +  
Sbjct: 232 -FDDRSVGFIPEDEEFFHVLVEGWRGTFLPYGPATVEGFEGWESRGLEG------VILLW 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K         GE  V NAL    L   +G+  ++V E L+    + GR E       G  
Sbjct: 285 KGLRIPLQGYGEHMVRNALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGELK--EIGGVW 342

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411
             VD Y     S+   L+ +R +    R IVV G     GD    +   +G       AD
Sbjct: 343 FLVDCYNANPESMRASLEGVRGLKGVRRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPAD 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + ++       E+ E   A ++ G  G        EA    + ++ + D++++  KG
Sbjct: 403 VVLLV-----GEEMEAAFA-VLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLL--KG 451


>gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
 gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
          Length = 450

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/464 (17%), Positives = 157/464 (33%), Gaps = 42/464 (9%)

Query: 6   LIYKDFPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      +L++      + +  +  ++ +++DSR I++G  F+A+ G+  +GH FI  AI
Sbjct: 5   LSLNQLAQLLSLQDNGDISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAI 64

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA  ++V    S+        SN P+ +V NT +     A     +    ++A+TG+ 
Sbjct: 65  EKGAATLIVDQPVSVN-----SSSNIPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSV 119

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +    G     +           +N +  P  +         +      
Sbjct: 120 GKTTTKELIASVLATQGKVHKTLAN--------YNNEIGVPKTLLELDETHNSA-----V 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +     G         +      TN+G  HI    + +A             P  S A
Sbjct: 167 IEMGMRGRGEIALLAQITRPTIAVITNVGTAHIGRLGS-EAAIAEAKCELLAESPSSSIA 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D     E  KR                   L  +           ++     DF  
Sbjct: 226 VLNYDHPLLTETAKRVWQGETITYGFSGGDIVGELLDLT----------TLRVNGLDFNL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PL G     N + A  +   +GID    L+   K+++  GR +     +    +   Y  
Sbjct: 276 PLSGRHHALNFMAALAVAKILGIDW-TSLQEGIKVNLPSGRAKRYQLATDILLLDETYNA 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNP 420
              S+   L  ++     R I V G     G   +     +G+    L  D   V  D+P
Sbjct: 335 GLESMLAALDLLKATPGQRHIAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDP 394

Query: 421 RSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + + I           F    + I  ++  I+     D ++
Sbjct: 395 ---EAKFIAEAATAVDCECFQTHADLINRLKEVIDF---GDRIL 432


>gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
 gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
          Length = 455

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 129/373 (34%), Gaps = 29/373 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + + + VS +SR+I  G +FVA++G + DGH F+           V   A  L   SA 
Sbjct: 21  PDCEFDGVSINSRNIAEGDLFVALIGERLDGHEFLAD---------VTDRASGLVVSSAD 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                P  VV++T   L   A          ++AVTG++GK+SV   +  I    G    
Sbjct: 72  TDLPLPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKTSVKDLISAILGGFGTVHA 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G          +N +  P  +   +  S  +   +       +S G +   L  I   
Sbjct: 132 TKGNL--------NNHIGVPLTLLDMQQDSDFAVIEMG------ASAGSEISYLCSIAKP 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             S  N  +              A        L  +  AI+  D  +  E M    +  C
Sbjct: 178 QISLINNVQSAHLEGFGSVEGIAAAKGEIYSGLDTDGTAILNLDQPWQAEWMALIGDREC 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHN-KQQVTIS----VEGKDFDFLFPLPGEFQVYNALVAAG 320
              SV      I    +  + +   + T+     +  +       +PG   V NAL AA 
Sbjct: 238 ITFSVDDDCADISASDIELMESGCCRFTLHLFTDMSLESQVVNLAIPGRHSVSNALAAAA 297

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +A G     ++  LE       R +       G  I   Y  +  S+   +  + +  
Sbjct: 298 CAVAAGASIEQIVSGLEAAQSPARRLQAKDLAQGGQIIDDSYNASPESVRAAIDVLAS-R 356

Query: 381 SGRIIVVFGCGGD 393
            GR ++V G   +
Sbjct: 357 PGRRVMVLGDMAE 369


>gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
 gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
          Length = 476

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 137/393 (34%), Gaps = 25/393 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  +S DSR ++ G  FVAI G++ DGH ++  A+  GA   +V      +D    + +
Sbjct: 26  EITGISIDSRTLEPGDAFVAITGDRLDGHDYVVSAMEAGASVALV-----GEDRLPDLPA 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +   +VVD+  + L         +    I+AVTG+ GK+     ++     SG     + 
Sbjct: 81  DGRYVVVDDPLEALRKIGVAARDRSNARIVAVTGSVGKTGTKEALRLTLAESGKVHASVA 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +               P+ LA+  +           +  +  G     +  ++     
Sbjct: 141 SFNNHWGV----------PLTLARMPAD---ADFGVFEIGMNHAGEISPLVKMVRPHVVI 187

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-KESPAIIYADDAYSKEVMKRAHNAGCRV 267
            T +   H+ +  + +    AK  +F+ L P   +            + +  A       
Sbjct: 188 ITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQFDLLKFLAAAAGVSKIH 247

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                     HL+K  +      V   + G++  +     G+  V N+L      + +G 
Sbjct: 248 TFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAVLTAVVDLGA 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMILKNIRT---ITS 381
           D A     L+ +    GR E      + G    +D  Y     S++  L  +        
Sbjct: 308 DLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAVLGEAPVTRP 367

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           GR I V G   +       +  ++   + D  I
Sbjct: 368 GRRIAVIGDMRELGSDADRLHAELLQPITDANI 400


>gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
 gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
          Length = 447

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 121/389 (31%), Gaps = 49/389 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+   +F A+ G   DG+ F   A+ +GA   VV                  +
Sbjct: 42  ISTDSRRIEPDSVFFALRGASFDGNRFAADALEKGAAYAVVDDPSLPNTRPDKAD---RL 98

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+  + L   A     +    ILA+TG++GK++    V ++           G  + 
Sbjct: 99  IVVDDALQTLQALAREHRRELGLPILAITGSNGKTTTKELVSRVLAEKYEVYATRGNLNN 158

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L    +         V + AS+ G         +   G  TN+
Sbjct: 159 H----------IGVPLTLL---AMTRDVEFGIVEMGASACGEIALLCSIAEPNYGIVTNI 205

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++     +     K  L++ L        + A+D     +                
Sbjct: 206 GRAHLEGFGGPEGVRRGKGELYDWLARTGGRVFVPANDPVLMSMAAERETLAAECYPTTL 265

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                H  +                                N   A  +    G+D   +
Sbjct: 266 ADGVEHHLEGDYNRF--------------------------NVAAAVAVGRYFGVDDERI 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFG 389
              +        R + + T      +   Y    +S++  L N R        R I++ G
Sbjct: 300 RYAVGSYRPDNHRSQKIRTGQNTLILDC-YNANPSSMQASLVNFRQEPLEGCTRKILILG 358

Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIV 415
                GD    +   +  +A ++ D  I+
Sbjct: 359 DMLELGDWSDAEHRHIISLAAEIPDARIL 387


>gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9768]
 gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/11074]
 gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9301]
          Length = 450

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 161/446 (36%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +   Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNCANQLLSSVYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  + +A             + +  S     ++ L+ I+   G
Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++   H  +   + A    + +               +   + +   K+   A    
Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADQFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    + + V IS    D +     P      N ++A  L     +
Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +  + L +   RFE       G R+  D Y  + +++   L  +      G+II
Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G           + A+  A I     +  +      I  +    I  +   
Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++A++  ++     DV+++  KG
Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434


>gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 450

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 162/446 (36%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  + +A             + +  S     ++ L+ I+   G
Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++   H  +   + A    + +               +   + +   K+   A    
Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADRFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    + + V IS    D +     P      N ++A  L     +
Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +  + L +   RFE       G R+  D Y  + +++   L  +      G+II
Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G           + A+  A I     +  +      I  +    I  +   
Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++A++  ++     DV+++  KG
Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434


>gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
 gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
          Length = 457

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 156/485 (32%), Gaps = 62/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + +  IN++  DSR I  G +F+ + G + DGH 
Sbjct: 1   MKL------TLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITEGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A               + ++   ++VD+  +     A+    K   +++
Sbjct: 54  FIQTAFDNGALATFTEKE---------LPADQAHILVDDALEAFQKLAAYYLEKTGVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G          +N +  P         +   
Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +E     +    L        +                    A+ ++  +  
Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   ++   D      +    +           G    L        K  +T S    
Sbjct: 210 MPDGSLLLVPSDPIVDPFLPSNLDVV-------RFGDGAELTVSELTEFKDHLTFSTNFL 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    +    +
Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILTALANLQLTKNRTEWKKAANGADIL 322

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411
              Y     ++++IL+    I     G+ I V       G++       M       A D
Sbjct: 323 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
             I        ED  ++        P         I   ++ +A ++   E L + D ++
Sbjct: 383 TVIF-----YGEDIAELSQLASQMFPLGHVYYFKKIADEDQFDAMVKHIKESLGEHDQIL 437

Query: 464 VAGKG 468
           +  KG
Sbjct: 438 L--KG 440


>gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius CECT 5713]
          Length = 456

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 133/412 (32%), Gaps = 34/412 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++      E          +W +  I  V  DSR I++G +F+ +V    DGH ++
Sbjct: 3   MQLAEVARALNIEA-------KEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +       +D S  I  +  +L V +T   L         K    ++A+
Sbjct: 55  EAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++       +              +  +       + +  P             
Sbjct: 110 TGSNGKTTTKDMTAAVLATQFNVHKTFANFN--NEIGVPMTILSMEPNT----------- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +    +G     L  +     +   +  +        + +           L +
Sbjct: 157 EVLVVEMGMDRYG-QLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +I  D+       K                  +    + +   K    ++    + 
Sbjct: 216 DGELVINGDEPLLTTKAKEVSQEVL--TFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEV 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF   + G + V+NAL A  +     I    + + L    +   R E++   +    +  
Sbjct: 273 DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSD 332

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALD 408
            Y     +++ +L     + + G+ I+V G     G++       + +    
Sbjct: 333 VYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHSDLAQAINP 384


>gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
          Length = 448

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 142/408 (34%), Gaps = 31/408 (7%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
               ++I+          + ++   S DSR ++   IF+AI G   DG  +I  AI +G+
Sbjct: 7   SKLIQVIDGKIKQKQLEEDEEVFGFSIDSRTLRKNEIFIAIQGENFDGSNYIDVAIKKGS 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             I+ SS     +           + V NT++ L   AS L G+    I+A+TG++GK++
Sbjct: 67  SWIITSSKNHKSNR---------CIYVKNTKETLCKIASYLVGEVSPKIIAITGSNGKTT 117

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V  I  +    +  +     +++            I L   L  L       V   
Sbjct: 118 TKEMVANILYQHYPKNEILVTKGNLNND-----------IGLPLTLFNLKKNHTIVVLEM 166

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             +H  +  +L  I     +      +    + + +       +       K   AI+  
Sbjct: 167 GMNHQDEITKLCKIAPPDIAVITNIGEAHLENFSSKNGIAKAKKEILLGAKKNGIAILPR 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y   +        C    +                +     ++V+ +  +    L G
Sbjct: 227 DDVYFNYLKSDCLYLRCISFGINK--------NSNIRLDLSSKVLTVDEEKINIESSLLG 278

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N   A  +  A+ + +  +++ ++ +  + GR E   T S    I   Y    +S
Sbjct: 279 KENLMNMAAAVSVANALELPTETIIKGMKTIDSIEGRLEVKITASNIKIIDDTYNSNPSS 338

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK-IALDLADIA 413
           + M +  +      +I++V      G   +     +G  I     D+ 
Sbjct: 339 MMMAIDVLDQFKQKKILIVGDMAELGPLSKKYHTDIGHYILEKNIDLV 386


>gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 465

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 178/477 (37%), Gaps = 40/477 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + D I +    LI+          + +I ++S DSR I +G +F AI G++ DGH F+
Sbjct: 4   MTVDDFISEIDGRLISG-------NLKEEIKQISIDSRTINSGELFFAIKGDRFDGHDFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+   A   VV +     +    + S+  I+ V++T + L   A          ++ +
Sbjct: 57  MDALRAEAVGAVVDNE--QVERYNNVDSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  + +    +    G                  P+ L +  S   + 
Sbjct: 115 TGSTGKTTTKDLVASVLETKFKTLKTEGN----------YNNEFGLPLTLFRLDS---TY 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G  +      +   G  TN+G  H++   +Q+    AK  L E  LP 
Sbjct: 162 EAVVVELAMRGLGDIKTLCQIAQPQIGVVTNVGLTHLECLGSQENIAKAKSELVEN-LPP 220

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+  DD Y +++                                 +  +S + ++F
Sbjct: 221 TGTAILNGDDKYVRQMADETKAEILYYGRESGNNLQASRVD-NLGEAGLKFRVSRQLEEF 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL GE+ VYNAL A G+ + +G++   + + L +  +   R E          I  
Sbjct: 280 TIDLPLAGEYNVYNALAAVGVGLKLGLNINEIQQGLAEPDLTGMRGEIKELKDDITLIND 339

Query: 361 DYAHTSNSLEMILKNIRTITSGR--IIVVFGCG---GDRDQGKRPIMG-KIALDLADIAI 414
            Y     S+E  L  +  I + +  +I V G     G   +     +G K+     D   
Sbjct: 340 AYNANPTSMEAGLDLLVDIGTDKGGLIAVLGDMLELGSAAEEAHRQIGKKVINKKIDYL- 398

Query: 415 VTDDNPRSEDPEKIRAEIIH-GIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +T  +  S     I  E    G+         +  E  R  ++++   D +++  KG
Sbjct: 399 LTVGDLAS----LIGQEAKKLGMDSSRIFICDDNQEINRQLLQLIKPDDTILL--KG 449


>gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 135/370 (36%), Gaps = 20/370 (5%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I  G +F+A+ G + DGH ++ +  A+GA A++V    +      
Sbjct: 11  GEDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVEREVA------ 64

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +  P L+V +TR  L    +    K    + A+TG+SGK++V   +  I +      
Sbjct: 65  --DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRTQ---- 118

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   ++ +   +       P+ L +            + + AS  G   + ++  + 
Sbjct: 119 --AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHRSAVIELGASRIGEIAYTVELTRP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN G  H+      +    A      E L  +  A++  DD        RA    
Sbjct: 174 HVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAADGTAVLNLDDKAFDTWKARASGRP 232

Query: 265 CRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               S+           +           +     +      L G   V NAL AA    
Sbjct: 233 LLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAH 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G+    ++  L+ L  V GR     T S    I   Y     S+   +  +    SGR
Sbjct: 293 ALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDDSYNANPASMLAAIDILSGF-SGR 351

Query: 384 IIVVFGCGGD 393
            ++V G  G+
Sbjct: 352 TVLVLGDMGE 361


>gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 456

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/473 (14%), Positives = 150/473 (31%), Gaps = 44/473 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L ++      E          +W +  I  V  DSR I++G +F+ +V    DGH ++
Sbjct: 3   MQLAEVARALNIEA-------KEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A +       +D S  I  +  +L V +T   L         K    ++A+
Sbjct: 55  EAAINGGAVATLWQ-----EDHSENIPDSIAVLPVSDTLVALQQLGKHYLMKINPKVVAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++       +              +  +       + +  P             
Sbjct: 110 TGSNGKTTTKDMTAAVLATQFNVHKTFANFN--NEIGVPMTILSMEPNT----------- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +    +G     L  +     +   +  +        + +           L +
Sbjct: 157 EVLVVEMGMDRYG-QLDFLSKLAEPDVAVITMIGEAHIEFFGTRDHIADAKMEITHGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +I  D+       K                  +    + +   K    ++    + 
Sbjct: 216 DGELVINGDEPLLTTKAKEVSQEVL--TFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEV 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           DF   + G + V+NAL A  +     I    + + L    +   R E++   +    +  
Sbjct: 273 DFTINMIGAYNVFNALAALSVGNIYHIPVDKMQKALASFDLTANRTEWLEAKNGAKILSD 332

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL-DLADIAIV 415
            Y     +++ +L     + + G+ I+V G     G++       + +    D  D   +
Sbjct: 333 VYNSNPTAVKEVLYAFEQVPTEGKRIIVLGDMLELGEKAAEMHNNLAQAINPDRIDSVYL 392

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN----KQDVLVV 464
                  E    +  ++            + + + T    L       D++++
Sbjct: 393 C-----GELMGHLAEKLREKFDETQIHHYQKDDLLTLTSDLKNELMSDDIVLL 440


>gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
 gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
          Length = 481

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 159/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   ++
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 270 VGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              +       L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFDENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR          G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
 gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
          Length = 462

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 165/458 (36%), Gaps = 40/458 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+   L+   +       IN +S++S  I+   +F+A++G + DGH FI QA+
Sbjct: 1   MILLSVSEISLILNAKSIGMNMNVLINTISTNSNEIKKKCMFIALIGKRYDGHDFIEQAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA+A++V+           +  N P ++V +T   L   AS L  +    ++A+TG+S
Sbjct: 61  MAGAQAVLVNR---------YVSVNVPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSS 111

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+SV +    I +  G      G  +               PI L        +     
Sbjct: 112 GKTSVKNMTVSILKNCGTVVSTQGNQN----------NLIGVPITL-----LNLTYQSDF 156

Query: 185 VSVEASSHGL-DQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +E  S+ L + ++L  I         N+   H+   ++ ++    K  +F  L     
Sbjct: 157 AVIELGSNQLGELNKLSKIVAADVALVNNIFISHLSGFRSLKSIQQEKGEIFSGLACNGQ 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I    +A                     +        +C   +  +  +S        
Sbjct: 217 VVINGDSNAVFMWNSMLQLKKRWWFSIYVKKEMDFFANNICIYPHGVRFILSSPYGVAPV 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-EFVGTNSRGGRIYVD 361
              + G   V NAL A+ L  ++G + + ++  L+ +  +PGR    +  + +   +   
Sbjct: 277 FLSILGRHSVSNALAASALAFSVGANLSEIVYGLQNIQPLPGRLYPILLNDGKLLLLDDT 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDR--DQGKRPIMGKIALDLADIAIVTD 417
           Y     S+   +  +  +   RI+V+      G+R         + ++  +     I+T 
Sbjct: 337 YNSNVGSMIEAINVLSVMPGYRILVISDMLELGERYVAIQYHYYIARLISESKIDQILTI 396

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
            N        I   I           N+ + IR  +  
Sbjct: 397 GN--------ISYLISKNCKEGKHFHNKNKLIRYLLNN 426


>gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
 gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
          Length = 481

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 157/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  +       
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVCPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis B2/94]
 gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M644/93/1]
 gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M13/05/1]
 gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M490/95/1]
 gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti B1/94]
 gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           sp. F5/99]
 gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
 gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
          Length = 481

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLSHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. 83/13]
 gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
 gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
          Length = 481

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella neotomae 5K33]
 gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
          Length = 481

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|297520608|ref|ZP_06938994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 262

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 93/262 (35%), Positives = 132/262 (50%), Gaps = 7/262 (2%)

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                  TT S + +   L+ L  QG T  ++E SSHGL QHR+  +K  A  FTNL RD
Sbjct: 4   KVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRD 63

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVG 271
           H+DYH   + Y  AK  L+ E       AII ADD   +  + +  +A        ++  
Sbjct: 64  HLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPN 121

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
             G+++    V    +   +  S    D +    L G F V N L+A    +A+G   A 
Sbjct: 122 CHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLAD 181

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L+   +L  V GR E   T      + VDYAHT ++LE  L+  R   +G++  VFGCG
Sbjct: 182 LLKTAARLQPVCGRMEVF-TAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCG 240

Query: 392 GDRDQGKRPIMGKIALDLADIA 413
           GDRD+GKRP+MG IA + AD+A
Sbjct: 241 GDRDKGKRPLMGAIAEEFADVA 262


>gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
 gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
          Length = 455

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 163/477 (34%), Gaps = 46/477 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         E+   L+       +  +   + DSR ++ G +F+ +V +  DGH ++
Sbjct: 1   MKL------TLREMATILNAPIQNEADVAVTSTAFDSRQVKPGGLFIPLVADN-DGHHYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A + GA   +  + +        + S+ P+++V +T       AS    +    ++AV
Sbjct: 54  DAAESNGATVALWQADH------QNVPSHLPVIIVPDTLAAYQQLASHYLSQVDPLVVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G++GK++   F+  I Q S  +       +          L+ P+   L      +   
Sbjct: 108 SGSNGKTTTKDFIAAIGQTSYKTVKTPENFNN-EIGVPQTILSMPTDTELLVIEIGMDHP 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G      +             +K      T +G  HI++ +T++    A  ++      K
Sbjct: 167 GDLTFLSKL------------VKPDIALLTMIGEAHIEFFKTRERI--ADGKMEIINGLK 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E   +++  D     +++R       +           L          Q +        
Sbjct: 213 EHGHLVFNGDE--PLLLERVGQHAHLLHDSFGLNSTNDLFASEIDMTPVQASFKTNQSAQ 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G + V NAL A  +   + I    + + L +  +   R E++     G  +  
Sbjct: 271 RFTIPMTGRYNVTNALSAITVGHLLHISDKKIAQALAEAPITENRTEWLDGQFGGKILSD 330

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRP-IMGKIALDLADIAIV 415
            Y     + + +L         G+ I V G     GD        +M  +  D      +
Sbjct: 331 VYNSNPTAAKEVLHFFADTPTQGKRIAVLGDMLQLGDASPALHASLMENLNPDKIAHVYL 390

Query: 416 TDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  E+ + +   ++     G        +    ++  +  L   D +++  KG
Sbjct: 391 V-----GEEIKSLEEALLPIYPAGTVKRYAIDDPESLLKDLLADLTSDDTIML--KG 440


>gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
 gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 174/484 (35%), Gaps = 56/484 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+      L+ + +           + V  DSR+++   +F+ + G  +DGH++I
Sbjct: 15  MNLDELLTSTGAWLVYESNSSKA------FSSVVMDSRNVKNNSLFIPLRGENQDGHVYI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS----NTPILVVDNTRKFLSLFASRLYGKHPE- 115
             A+  GA+  VV   Y  ++ +A +      +   + V N  K L   A     K P  
Sbjct: 69  EPALKNGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNL 128

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TG+SGK++    +  I  +   +    G  ++           T  P+ + +   
Sbjct: 129 YKIGITGSSGKTTTKEILASIYSKKYNTVSTKGNLNSE----------TGLPLSVFEVRP 178

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +  +  G        +   A   TN+G  HI    T+QA    K  +F 
Sbjct: 179 E---HEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFS 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    + +  +    + +K   +     +S         ++    + +       +
Sbjct: 236 FFKDDS---LGFIPECEFTDFLKDIPHGSVFTVSDNDSSLVQKVEDAGVLGS------KI 286

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K  + LFPLPG + V NAL+   L    G  +  +   LE +  + GR + +      
Sbjct: 287 FYKGEEILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGRSQVLHGFVTY 346

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVV---FGCGGDRDQGKRPIMGKIALDLA 410
                 Y    +S++  ++   +I     +  V+      G + D   + I+       A
Sbjct: 347 FLDC--YNANPDSMKSAIEFCDSINTECAKHYVLASMLELGAESDYEHKKIIEDALKSNA 404

Query: 411 DIAIVTDDNPRSEDPEKIRAE-----IIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVV 464
           D      D+        I +      +      +  K N+ +A++    E L+K D +++
Sbjct: 405 DNLYFFGDD--------ICSAFEGMNVSSSKKIYKFKTNQFDALKEQLKENLSKDDFVLL 456

Query: 465 AGKG 468
             KG
Sbjct: 457 --KG 458


>gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 465

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/409 (18%), Positives = 138/409 (33%), Gaps = 30/409 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V +DSR  + G +FV + G + DGH F  +A+ QGA A++ S               
Sbjct: 2   VTCVVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASRPLPDVA-------- 53

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L+V++T + L   A+   GK    ++ VTGT+GK+S+   + Q+    G ++     
Sbjct: 54  APVLLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRGKTARNALN 113

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +           T                +    +    S  G        I+   G  
Sbjct: 114 HNNQIGMPCTVLNTDGD-------------EDFWVIEAGISHAGDMDELAPVIRPDLGLI 160

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGC 265
            N+G  H +    +   ++    L                D    A +     R  +AG 
Sbjct: 161 LNVGPGHTEGLGDRGVAWHKARLLAHLAQGGLGLVSADYPDLVREAGATGAKLRFFSAGA 220

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +           +       +    + ++G   D + P  G +   N++  A     +
Sbjct: 221 HEVEYRADYVGPATEAGGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAAAHLL 280

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+  A + E L +  + P RF      +        Y     S+  +L+       GR  
Sbjct: 281 GLSPAEIAEGLGRAQLPPQRFNRERVGAWEIIDDT-YNANPLSMRRMLETAAGQARGRAF 339

Query: 386 V-VFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           V V G  G+     +     +G++  DL   A+        E    +  
Sbjct: 340 VPVLGEMGELGAVAEALHEELGRLLADLGPSAVFWKGGHADEVRAGLAR 388


>gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 421

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 128/363 (35%), Gaps = 27/363 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++D+R      +F  + G   DG+ F+P A+ +GA+ +V S      +  A      
Sbjct: 10  KGVTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDPQWNSEPKA------ 63

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +VV +T   L   A+    K    I+A+TG++GK++    +  +  +S  +    G  
Sbjct: 64  --IVVKDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQSFNALKTEGNL 121

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +            T                 +  V + A+  G             G  T
Sbjct: 122 NNHLGVPLTLLRLTFE-------------TDIAIVEMGANHPGEIARLCQIADPDFGYIT 168

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N GR H++   + +    AK  L++ L           D++  +E+++          + 
Sbjct: 169 NFGRAHLEGFGSFEGVIRAKSELYQYLKKDNKCIFFSEDNSLQRELLE------GYEPTY 222

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +  +      +     K   T+++E    +F   L G +   N   A  +     + + 
Sbjct: 223 SFSLEGREGANLQLSLLKSIPTVTLEWAGQEFSSALIGNYNATNIAAAMCIGRYFKLSAE 282

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   +E       R +FV        +   Y    +S+   ++  + + S   +++ G 
Sbjct: 283 AIRRGVEGYIPTNNRSQFVEKTRGNRVLMDAYNANPSSMHAAIEAFQALPSAHKVLILGD 342

Query: 391 GGD 393
             +
Sbjct: 343 MKE 345


>gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar
           Abortus 2308]
 gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis bv. 5 str. 513]
 gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 9 str. C68]
 gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin
           Cpn60:Cytoplasmic peptidoglycan synthetases,
           C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus
           2308]
 gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis M5-90]
          Length = 481

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
          Length = 450

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 161/446 (36%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  + +A             + +  S     ++ L+ I+   G
Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   H  +   + A    + +               +   + +   K+   A    
Sbjct: 184 VITYIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADRFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    + + V IS    D +     P      N ++A  L     +
Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +  + L +   RFE       G R+  D Y  + +++   L  +      G+II
Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G           + A+  A I     +  +      I  +    I  +   
Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++A++  ++     DV+++  KG
Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434


>gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276]
 gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276s]
          Length = 450

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 162/446 (36%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  + +A             + +  S     ++ L+ I+   G
Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++   H  +   + A    + +               +   + +   K+   A    
Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADRFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    + + V IS    D +     P      N ++A  L     +
Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +  + L +   RFE       G R+  D Y  + +++   L  +      G+II
Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G           + A+  A I     +  +      I  +    I  +   
Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++A++  ++     DV+++  KG
Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434


>gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/498 (15%), Positives = 154/498 (30%), Gaps = 59/498 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+++       LI   +                DSR I  G +FVAI G + DGH ++
Sbjct: 4   MSLEEIAQAVQGRLIAGTAAIDTPVATSTFT----DSRQIVEGSVFVAIAGERVDGHDYV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115
            +  AQGA A +V              +  P +VV++T   L   A     +      P 
Sbjct: 60  SKVGAQGAVAAIVDHEID--------GAGVPQIVVEDTVLALGALAKHNIERRRALETPF 111

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG+ GK++    ++ +    G +   +G  +               P+   K  +
Sbjct: 112 TVIGITGSVGKTTTKDLMKALLAHIGPTIAPVGSFN----------NEIGLPLTSLKVHA 161

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G   +    +         +G  H+    + +    AK  +  
Sbjct: 162 ETR---FLVAEMGANHVGEIANLTSLVPPDIAVVLKVGVAHLGEFGSPERIAQAKSEIIR 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L+P     +   D+  +        +     L     GK     +          +  +
Sbjct: 219 GLVPGGLSVLNANDEHVAAMSAIAPGDVMWFGLPQNNDGKPAISAQHVHCDELDHPSFIL 278

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  D +      G    +N + A                +     +   + P R      
Sbjct: 279 DNGDGEHAEVTLGICGQHNVMNALAAASVAMRLGMSIGDVASALSDVTAISPHRMAVSIV 338

Query: 352 NSRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRP 400
           N +          +    +S++  L  +    +G       + V G     G  ++    
Sbjct: 339 NKQETSFTLIDDSFNANPDSMKAGLDGLLRWKAGSESQPFRVAVLGAMLELGPDEKDLHV 398

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEA----IR 450
            +G+ AL+    A++T  +      + +   +  G              +  EA     R
Sbjct: 399 GIGRYALEGGVDALLTVGSASDASLDALAGAMADGASSAGDASHVDWVHDIDEADSLVTR 458

Query: 451 TAIEMLNKQDVLVVAGKG 468
            A+E      V+++  KG
Sbjct: 459 LAVEH--PGAVVLL--KG 472


>gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
 gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
          Length = 473

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 139/451 (30%), Gaps = 39/451 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R I+ G +FVA+   + DGH F+ QA  +GA A +V+      D +       
Sbjct: 24  TGVSIDTRTIEPGDLFVALAAAR-DGHEFVAQAFQKGASAALVNHVPDGMDAAK------ 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             LVVD+    L    +    +    ++A+TG+ GK++V   ++Q     G     +   
Sbjct: 77  -CLVVDDVLAALERLGTAARTRTQAKVIAITGSVGKTTVKDMLKQALSGQGKIHAAVASY 135

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L              + +  S+ G         +      T
Sbjct: 136 NNHWGV----------PLTL---SRMPVDTDYAVIEIGMSAPGEIAPLSRMARPHVAMIT 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++     +     K  +FE L P     +    +           +A   V   
Sbjct: 183 TIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILARAAVAHAAEVVTFG 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +G  + L  V    +   + I+ +         + G     NA+       A G D+ 
Sbjct: 243 EAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSVSGRHYAVNAVGVLCAVAASGADTT 302

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIY----VDYAHTSNSLE-----MILKNIRTITS 381
                L     V GR +                +D A  +N         +L  I     
Sbjct: 303 QAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAAGLEVLAAITPERG 362

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           GR I V G     GD        +  +    A   + T                + G   
Sbjct: 363 GRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHTCG-----PLMVHLDAALPGAKR 417

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
                   +  R     L   DV++V G KG
Sbjct: 418 GEHTETAQDLCRAVPRTLRPGDVVLVKGSKG 448


>gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 465

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 85/471 (18%), Positives = 154/471 (32%), Gaps = 33/471 (7%)

Query: 6   LIYKDFPELINQLS-IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     E+ + +            +  +S+DSR IQ G  FVA+ G + DGH FI  A+
Sbjct: 1   MLTATVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPGMAFVALKGERFDGHDFIGAAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGT 123
           +    A               +R    ++ VD+T   L   A+    K     ++ VTG+
Sbjct: 61  SG--GAAAAIGTSFPGHQVVGLRPGQALIQVDDTLLALQKLAAYHRQKVLKGPLIGVTGS 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++  + +  +           G  +             P         + +    + 
Sbjct: 119 SGKTTTKNLIAAVLSPVLKVLKTPGNFNNEIGLPMTLLRLAP------WHQAAVVEMAMR 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                AS   +        +   G  TN+G  H+    +      A        LP E  
Sbjct: 173 GKGEIASLAAIA-------RPTIGVITNIGTTHLGLLGSIANIA-AAKGELLAALPAEGL 224

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  D+ + + +            + G    +        +      T    GK+    
Sbjct: 225 AVLNGDNEWCRRLAATCPCRVVFFSTRGQGEIYARDIGDRGLEGTF-FTAVFPGKEVRVQ 283

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   V +AL A  +  ++G++   +   L        R +              Y 
Sbjct: 284 LPVPGRHNVEDALAALAVGFSLGVEPETMARSLADWPAEDLRQDLRPGPGGSLVFNDAYN 343

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420
               S+E  L+ +  +  GR + V G     G  +      +G+ A       ++T    
Sbjct: 344 ANPESMEAALQALGAL-PGRRVAVLGAMLELGPAEVELHRRVGRFAAARGLYRLITV--- 399

Query: 421 RSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E   +I A  +  G+P           EA    +  L   DV++   KG
Sbjct: 400 -GELAGEIAAGALEAGMPADQVFACLTHEEAAGH-LRGLGHGDVVLF--KG 446


>gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
 gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
          Length = 458

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 141/393 (35%), Gaps = 29/393 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L       LI +         +   + VS+DSR I  G +F+A+ G + DGH ++ 
Sbjct: 6   RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLA 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+T
Sbjct: 57  EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++V   +  I +         G   ++ +   +       P+ L +         
Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G   + +   +      TN G  H+      +    A      E L  +
Sbjct: 160 SAVIELGASRIGEIAYTVGLTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             A++  DD        RA+       S+       H   +           +     + 
Sbjct: 219 GTAVLNLDDKAFATWKARANGRPLLTFSLEQAQADFHAADLQRDARGCMGFRLHGVAGEA 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NAL AA    A+G+    ++  L+ L  V GR     T S    I  
Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            Y     S+   +  +    SGR ++V G  G+
Sbjct: 339 SYNANPASMLAAIDILGGF-SGRTVLVLGDMGE 370


>gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
          Length = 471

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 156/482 (32%), Gaps = 45/482 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         ++ + +          ++   S DSR + AG +F A++G + DGH F+
Sbjct: 1   MKL------TLGQVADWIHAEGEFVSTDEVVGYSIDSRTVGAGELFFAVMGERFDGHEFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPEN 116
             A+  GA A VVS    ++   +       +L V +        L   A  +       
Sbjct: 55  KTALEAGAVAAVVS----MRWVVSAEVDPCKLLRVPDGEDCVLSALQKLAREVRKSWGGR 110

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG++GK++    V  +           G  +               P+ L      
Sbjct: 111 VIGVTGSAGKTTTKECVAAVLAAKFKVLKSAGNLNNHFGV----------PLQLL---RL 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                V  + +  +  G         +      +N+   H+++            +   +
Sbjct: 158 EKEHQVAVIEMGMNHAGEIATLAKIAEPDWAVVSNVAAVHLEFFADGMEGIARAKKELVD 217

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A + A D          H A    LS     + + +K V     +  V ++  
Sbjct: 218 ALPAAGVAFLNA-DDVFVSTFGEGHEARMFGLSETADVRGVEVKNVGLEGMQFVVQVTAR 276

Query: 297 GKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                          GE  VYNAL A  + +  G+     +  L+ +     R E +   
Sbjct: 277 EGRVADKMRARIALLGEHNVYNALAAIAVGLESGMTLGECVFALDSVVPSDKRGEMIEW- 335

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I   Y     +LE ++  +  I  GR IV+ G   +  Q    +       +A  
Sbjct: 336 HGARLINDSYNSNPRALEAMVDALMAIEGGRHIVIAGEMLELGQDAGKLHAASGRQMAKR 395

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
                         +  AE + G+        +      EA       L + DV+++ A 
Sbjct: 396 G------VDVVVGVRGFAESLAGVAKMSGAEALFVKTPEEAGAWMKANLREGDVVLLKAS 449

Query: 467 KG 468
           +G
Sbjct: 450 RG 451


>gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
 gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
          Length = 481

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHLTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 451

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 157/420 (37%), Gaps = 39/420 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+        EL   L    +   +  I  VS+D+R + AG +FVA+ G + D H F 
Sbjct: 2   MTLR------LAELAQVLDARLIG-EDGAITAVSTDTRTLGAGALFVALRGERFDAHDFC 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+A GA A++V     L           P LVV ++ K L      +  +    +LA+
Sbjct: 55  EQAVAAGASALLVERELPLA---------IPQLVVTDSLKGLGRLGRLVRERINPKVLAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V      I ++ G      G  +               P+ L          
Sbjct: 106 TGSCGKTTVKEMATAILRQEGDVLATAGNFN----------NEVGVPLTLL---RLEPQH 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G         K  A    N+   H++   + +  F+A      E L +
Sbjct: 153 RFAVMELGANHPGEIAWTTSLAKPDAAIINNVAAAHLEGFGSLEGVFHA-KSEIFEGLGE 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+ AD+ +  +   R  +          +  F     V       +  +     + 
Sbjct: 212 GGTAIVNADNEFWPKWQARGIHCA--FSIEDQRQPFHARNVVINQQGCAEFVMVTPQGEI 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NAL AA   +A+G   A V   LE +  V GRF        G  +  
Sbjct: 270 SLTLAIPGRHNVANALAAAAGTLALGASLASVKAGLELMAPVKGRFCVQRWG--GLTLVD 327

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
           D Y  +  S+   +  +  + SG  ++VFG     G+    +   +G+ A +    A++T
Sbjct: 328 DTYNASVESVLAGIDALTAM-SGYKVLVFGDMKELGEESAEQHARVGRHASERGLDAVLT 386


>gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 447

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 141/391 (36%), Gaps = 38/391 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSN 89
           + +S+D+R I+   +F A+ G   +G+ F  QA+  GA  A++    Y L+D +      
Sbjct: 32  DGISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEYHLKDKT------ 85

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              ++V++  + L   A          +LA+TG++GK++    +  +  +   ++   G 
Sbjct: 86  ---ILVEDVLQTLQDLAHAHRKYLDIPVLALTGSNGKTTTKELINSVLSKKFKTTATQGN 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ L    S   +  +  V + A+  G             G  
Sbjct: 143 LNNH----------IGVPLTLL---SMNKNTEMGIVEMGANHIGEIADLTAIAAPDFGYI 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++   + Q     K  L++ L+  +    +  DD    E +           +
Sbjct: 190 TNFGKAHLEGFGSVQGVIKGKSELYDYLIAHKGTLFLNLDDPIQAEKL---------GST 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +         +  +++  Q   + +  +      L G++   N   AA +     I +
Sbjct: 241 HTFCFSAHQETDLNIVYHTAQPFANFQFDEITVNSNLMGQYNTINLAAAAAIGTFFKISA 300

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
             + E LE       R + +  N     I   Y     S+E  L+N   +   G  I   
Sbjct: 301 EDIKEALEAYVPKNNRSQII-NNGDQTIILDAYNANPTSMEAALRNFAGLERQGPKIAFL 359

Query: 389 GCG---GDRDQGKRPIMGKIALDL-ADIAIV 415
           G     G+    +   +  +A  L  D  I+
Sbjct: 360 GDMFELGETSAYEHQFIANLAAQLDIDHLIL 390


>gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 483

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 160/453 (35%), Gaps = 41/453 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      +          QW++ ++  VS DSRH++ G +F+ + G   DGH ++
Sbjct: 27  MKLAEIAKAINAQ------NEIEQWKDIEVTSVSFDSRHLERGALFIPLQGAH-DGHQYV 79

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A + +S + L +      +  P+LVV +  K L         K    ++AV
Sbjct: 80  ETAFTNGAAATLWASDHELTN------NGHPVLVVTDPLKALQQLGKYYLHKINPIVVAV 133

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I       +      +               P+ L    +   + 
Sbjct: 134 TGSNGKTTTKDMIASILSTQLNVTKTYANFN----------NEIGVPVTLLNMEA---NT 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  V +     G     L  +     +   +  +        +             L +
Sbjct: 181 EVVVVEMGMDRFG-QLDFLSKLVSPDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKE 239

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+    E   +      R          ++   V A        ++ E  D 
Sbjct: 240 DGLLVYDGDEPLLNERAAKVAQQTSRFGRQLTDD--LYATSVTAGPRSISFKVN-EWPDE 296

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ GE+ V NAL A  +   + I  A +   L  + +   R E+  + +    +  
Sbjct: 297 QFTIPMVGEYNVNNALAAMVVAKRLHISPAHIKTALANVELTENRAEWFKSKNGAQILSD 356

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     + + +LK +  +   GR I V G            +G  A  L   ++ T+ N
Sbjct: 357 VYNSNPTAAKQVLKTLAAMPVQGRRIAVLGDML--------ELGDAAPRL-HASLATEIN 407

Query: 420 PRS-EDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           P   ++   I  E++H     +E+G    AI  
Sbjct: 408 PAQIQEVYLIGTEMVHLQSKLLEQGYPATAIHY 440


>gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
 gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
          Length = 449

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 149/419 (35%), Gaps = 35/419 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+           + +I+ VS+DSRHI    +FVA++G + D H FI
Sbjct: 1   MLLSEIAKACDGRLVG---------ADCQISSVSTDSRHIDEQGLFVALIGERFDAHDFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P    QGA A++VS             +  P ++V +T+K L L A  ++        A+
Sbjct: 52  PAVQEQGATALLVSKEVD---------TTLPQVIVSDTQKALGLIAKHVHQVCHTFTFAL 102

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  I  RSG      G  +           + PS  +    L      
Sbjct: 103 TGSCGKTTVKEMLASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQN 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +++ +  A             +       N+   H++   + +    AK  +FE  L +
Sbjct: 163 EISYTTQLA-------------QPNVALVNNIAAAHLEGFGSIEGVAKAKGEIFEG-LKE 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKD 299
              AI   D     +             ++       +   +      +    ++     
Sbjct: 209 NGIAIYNLDSNGLPKWSSLFEGKQVVSFAMNDSCADFYASNIEVNAIGEPSFQLNTPKGS 268

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G+  V NA+ AA L I        + + L++L  V GR       S    I 
Sbjct: 269 IQVSLGIIGKHNVANAVAAAALAIQANSSLNDIQQGLQELGSVKGRVAVETLASGLKVID 328

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             Y  +  +++  ++ +      R +V+      G+        +G+ A       +VT
Sbjct: 329 DTYNASVPAMKAAVELLGGFKGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVT 387


>gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 503

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 157/397 (39%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLADGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+A GA  ++V               + P +VV+NT   L+  A+ +       +LA+
Sbjct: 55  AEAVACGASGVLVDR--------LLPALSVPQVVVNNTELALARIAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   + ++  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  +  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++  +   +   V   G      I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L +   V GR +   T   G 
Sbjct: 278 QGEAQIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARPVAGR-QIAQTLPNGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
 gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
          Length = 449

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 89/484 (18%), Positives = 178/484 (36%), Gaps = 50/484 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L   +   + N   +      +R +  V +D+R    G +++AI G+  DGH ++  
Sbjct: 2   LVELKLSEIASICNGSLL----GEDRLVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLET 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A++      ++          P+++VD+TR+  +  A  L       ++A+TG
Sbjct: 58  ALKNGALAVLSQQDSQVR----------PLVLVDDTRQAYADIAHYLRQLFSGKLVAITG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+++  ++ Q               +               P+ L           +
Sbjct: 108 SNGKTTIKEWLSQCLAERVKVLKTEKNNNNQ----------IGVPLTLLGLKKEHQVAVI 157

Query: 183 THVSVEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              +        L Q     I       +N    H +   + +             L  E
Sbjct: 158 ETGTSFVGEIAKLAQITTPDI----AIISNASGSHYEGFGSIEGIAKE-KGALLTGLTAE 212

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI+  DD +    +       C     G  G  +  K+V       +  +  +G+++ 
Sbjct: 213 GVAILNHDDPWFDYWVGLLDKRACVSFGFGS-GADLVAKQVELFSQSSKSILCYQGEEYV 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG+ QV NA+      + +G+      E L +  V+  R EF   NS+   +   
Sbjct: 272 LHLAVPGKHQVANAMAVLLALLNLGVTFESACESLSRPLVIDKRLEFQYLNSQALVLNDC 331

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  +  S+E  +  + + + G+  +V    G  G+ ++     +G+ A   A +  +   
Sbjct: 332 YNASPKSVEAAIDVLMSQSQGQKWLVLGALGELGELEEKIHQQLGEYAA-FAGVTGLISV 390

Query: 419 NPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HETV 472
            P       I A+      G  +   N ++A    I+ L K++ ++V  KG      E  
Sbjct: 391 GP----IAAIAAKAYEERGGVAVYCENNLQAAEF-IKPLGKENAILV--KGSRSAQME-- 441

Query: 473 HIVT 476
            I+ 
Sbjct: 442 QIIK 445


>gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
 gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
          Length = 477

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 164/473 (34%), Gaps = 50/473 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   D +      L     +  +      I  V +DSR ++   +FV ++G  +DGH ++
Sbjct: 1   MNENDSLLSLEEILEAVNGVHVLGNSPLCIKSVQTDSRLVEKNTLFVPLIGENQDGHSYV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATI-----RSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           PQAI +GA  + +S      + +  +       +   + V+NT + L   A+R   K P 
Sbjct: 61  PQAIEKGASVVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQKSAARYVEKFPH 120

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + VTG+SGK++    +  I  +        G  ++           T  P+ +    
Sbjct: 121 LIKIGVTGSSGKTTTKEILVSILSQKYKVISNKGNLNSE----------TGLPLSVFNIR 170

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +           +  +           +K      TN+G  HI    +++     K ++F
Sbjct: 171 AE---HECGVFEMGMNRENEIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIF 227

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  +  I   DD +S  +       G  V          ++  +     K  +   
Sbjct: 228 SYFGGFGTGVIP-VDDEFSDFLKNE--IDGKVVFYGNDTDSVKYICDMGLKGTKFSID-- 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 + + PLPG++   +AL A  L   +G+ S  + + +  L  + GR E +   + 
Sbjct: 283 ----GIETILPLPGKYNYKDALGAIALAQVLGLSSRQISDGISSLKPLSGRSEILDGKNF 338

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                  Y    +S+E  ++            +     + D  K  ++G +    +D   
Sbjct: 339 LIMQDC-YNANPDSMEKAIE-----------FIGSVKKEADAKKIFVLGDMLELGSD--- 383

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVAG 466
                 +S   +     +   +   I  G     A + A     K  ++ +AG
Sbjct: 384 -----SKSAHEKTGLLAVNSDVDLVIFIGTEMKAAFKKAKNSSEKN-IIFIAG 430


>gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 426

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 74/442 (16%), Positives = 151/442 (34%), Gaps = 46/442 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++D+R ++ G +F A+ G   +G+ F   A+  GA  +VV  A  +QD         
Sbjct: 14  RSVTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQDD-------- 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+    L   A+         ILA+TG++GK++    V  +  +   +   +G  
Sbjct: 66  RYVLVDDVLTTLQQLANLHRRTLGIPILAITGSNGKTTTKELVNAVMSKKYKTYATVGNL 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L    +   S     V + A+           ++   G   
Sbjct: 126 NNHIGI----------PLTLL---AMDESIEFGIVEMGANHQKEIASYCSFVEPNYGLIN 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++     +     K  L++ L      A I + + +  E+            + 
Sbjct: 173 NVGKAHLEGFGGFEGVKKGKGELYQYLFETNGIAFINSKNEHLMEM--------SPFEAP 224

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G+         + +   V      ++      L G++   N L A  +    G+ S 
Sbjct: 225 VLYGRNSDFYNAKFLKSDPFVAFIAGNEEL-VETKLVGDYNFDNILAALCIGKYFGVPSI 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
              + +E+      R + V T  +   I   Y     S+   ++N  ++     +V+ G 
Sbjct: 284 AANQAIEQYDPTNNRSQIVKTE-KNEVILDSYNANPTSMRAAIENFASLQKENKVVILGD 342

Query: 391 G---GDRDQGKRPIMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
               G+  + +   +G +   L D   I+   N          A              + 
Sbjct: 343 MYELGEESEVEHANIGALLNLLTDTKIILIGKN---------MAAASKECTAAAYMDTKE 393

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
            A+   +        +++  KG
Sbjct: 394 AAVNFLVSNQILNSTILL--KG 413


>gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 242

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 10  MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 68

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS    +         + P ++V +TR+     A+ +  + P  ++A+TG+SG
Sbjct: 69  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTST 152
           K+SV      I  + G + +     + 
Sbjct: 120 KTSVKEMTAAILSQCGNTLYTASNFNN 146


>gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
 gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 458

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 29/393 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L       LI +         +   + VS+DSR I  G +F+A+ G + DGH ++ 
Sbjct: 6   RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLA 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+T
Sbjct: 57  EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++V   +  I +         G   ++ +   +       P+ L +         
Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G   + ++  +      TN G  H+      +    A      E L  +
Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             A++  DD        RA        S+           +           +     + 
Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NAL AA    A+G+    ++  L+ L  V GR     T S    I  
Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            Y     S+   +  +    SGR ++V G  G+
Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGE 370


>gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 456

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 155/499 (31%), Gaps = 76/499 (15%)

Query: 1   MKLQDLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L       F E+ + L       Q+ +    +V  DSR I  G +F  + G + DGH 
Sbjct: 1   MQL------TFYEVASVLKAQNDVHQFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHG 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                + P ++VDN    L   A     K   ++ 
Sbjct: 54  FIVTAFENGAAATLSEKELD----------DYPYILVDNVLAALQRLAQYYLEKMKVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     +    L                       +  Y  AK ++     
Sbjct: 156 -------VLEMGQDHMGDIHLLSTIAQPKVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   ++   D    + +    N           G    +        K  ++      
Sbjct: 209 MKDGTLLVVPADKIINDFLPSQLNVV-------RFGPDEDIFLTKLEERKDSLSFETNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA++AA + +  G+    + +    L +   R E+    +    +
Sbjct: 262 DNAIDLPVTGKYNATNAMIAAYVALKEGVTQDKIQKAFATLELTRNRTEWKKAKNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + +   +         +
Sbjct: 322 SDVYNANPTAMRLILETFSTIPFNEKGRKLAVLADMKELGVDSKQMHSAM---------I 372

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           T  NP      +I +EI      F+   +       A E+          GK H   + V
Sbjct: 373 TSLNP------EILSEI------FLYGEDMAALFAYAKEIFPP-------GKAH---YFV 410

Query: 476 TNGEKKMSVD-CDIIREIL 493
            N EK    D    ++E L
Sbjct: 411 KNAEKDQFSDLVKAVKEAL 429


>gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
 gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
          Length = 470

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 143/411 (34%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
               +      I  +S+DSR    G +FVAI G++ D H F+P    +   A++V+    
Sbjct: 15  GATVLGDDSVTIERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAVRNVSAVLVTR--- 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     N P L V +TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 72  -----TPQDWNVPALKVADTRVGLGALARGWRRRFSMPLVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++      ++           P+ L       ++  +  V +  +  G     
Sbjct: 127 AAVGADARLATAGNFNNDI-------GLPLTLF---RLHAAHQLAVVELGMNHPGETSEL 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +       N  R+H ++  T +A            L  E  A+  ADDAY+     
Sbjct: 177 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHA-SVIHALSPEGVAVFPADDAYASIWRV 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++    +      V        ++I       +    + G+   +NAL A
Sbjct: 236 AATGNRIMDFALNSAERTTEA-AVKGTFAGNVLSIDTPAGRLEVTLQVLGDHNAHNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374
               +A G+    +   LE    V GR +       +  G  +  D Y    +S+   + 
Sbjct: 295 TSAALAAGVSLDAIRRGLESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            + +  + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 355 VLASRPAPRVLVMGDMGEVGDNGPAFHREIGAYARDRGIDALYAMGDASRD 405


>gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
 gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
          Length = 454

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 140/406 (34%), Gaps = 26/406 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  +    +  ++  I+ VSSD+R +  G +F+A+VG + D H F+  A   GA A++VS
Sbjct: 9   LQDVLNAELIGQDVTIDAVSSDTRTLGKGALFIALVGERFDAHDFVETAKQNGASALLVS 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               +         + P LVV +T+  L    + +  +     +A+TG+ GK++V   + 
Sbjct: 69  KVVDI---------DLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTGSCGKTTVKEMLA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I  + G + +  G  +            TP                   + + A+  G 
Sbjct: 120 AILSQKGQTLYTAGNFNNDIGVPLTLLRLTPF-------------DDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    +K      TNL   H++   +      AK  +F+ L       +    +    
Sbjct: 167 IAYTTSLVKPDLALVTNLAAAHLEGFGSLDGVAQAKGEIFQGLSDGGVAIVNQDSNGGDF 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                       +   G    +         +      +      +     LPGE  V N
Sbjct: 227 WTPALEGKQVLTMTVTGKPADYRAENIHHIDNGCCAFDLVSPDGVYPVRLSLPGEHNVAN 286

Query: 315 ALVAAGLC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A++AA     I   +    V+  L  +  V GR            I   Y  +  +++  
Sbjct: 287 AVLAAIAATKIDSRVTMDDVVRGLGSVSPVKGRGAISFPRPGLRLIDDSYNASLAAMKAA 346

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  + +    +IIV+      G+        +     + +   ++T
Sbjct: 347 VDLLDSFDGDKIIVLADMAEMGEHTDSVHEDVAMHLSNASIQTVLT 392


>gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 483

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/494 (16%), Positives = 152/494 (30%), Gaps = 56/494 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++++       LI                   SDSR    G +FVAI G + DGH F+
Sbjct: 4   MSVEEIAKAVDGRLIGDADSESRA------TNTVSDSRQAGPGSVFVAIRGERVDGHDFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
            +   QGA   +V                 P +VV +T   L   A     +        
Sbjct: 58  AKTAEQGATVAIVDHEVE--------SDGLPQIVVKDTVDALGELARHNIVRRRELDGDF 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+ +TG+ GK++    +  +    G +   +G  +                I L     
Sbjct: 110 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +       V+   +SH  +  RL  I     +               +           
Sbjct: 156 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293
           + L     A++ ADD +   +   A            Q   +    V A    + +   +
Sbjct: 216 QGLLPGGTAVLNADDEHVVPMAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352
             +G        +PG   V NAL AA + +  G+    V      +  + P R      N
Sbjct: 276 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 335

Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401
             G         +    +S++  L  ++   S        + + G     G  +      
Sbjct: 336 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTS 395

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456
           +G  A +L   AI+   + + +  + +   +  G             +   A +  +++ 
Sbjct: 396 IGTYAAELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVVDLA 455

Query: 457 N--KQDVLVVAGKG 468
                 V+++  KG
Sbjct: 456 RNHPDAVVLL--KG 467


>gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
 gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
          Length = 470

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 135/411 (32%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
               +         +S+DSR    G +FVAI G++ D H F+P   A+   A + S    
Sbjct: 15  GSTVLGDDSVAFERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAALASR--- 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     N P L V +TR  L   A     K    ++AVTG++GK++V   +  I  
Sbjct: 72  -----TPQDWNVPTLQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++      ++           P+ L       ++  +  V +  +  G     
Sbjct: 127 AAVGADARLATAGNFNNDI-------GLPLTLF---RLHAAHQLAVVELGMNHPGETSDL 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +       N  R+H ++  T +A       +   L P+         D     + +
Sbjct: 177 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQGIAVFP--ADDAYASIWR 234

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A      +       +      V        ++I       +    + G+   +NAL A
Sbjct: 235 VAATGNRIMDFALNSAERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVLGDHNAHNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374
               +A G+    +   LE    V GR +          G  +  D Y    +S+   + 
Sbjct: 295 TSAALAAGVSLDAIRRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 355 VLAPRPAPRVLVMGDMGEVGDNGPAFHREIGAYARERGIDALYAMGDASRD 405


>gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
 gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
          Length = 452

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  N  K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQIVCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +    A  N   V I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAVKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     N +   +   Y  ++ +++  ++++      R+
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLDEFDGKRV 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           I +      GD  +     MG+       D   +
Sbjct: 352 IAITSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 482

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 143/393 (36%), Gaps = 20/393 (5%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           +++     ++  ++ V +DSR I    +FVA+VG + D H F+  A   G  A ++SS  
Sbjct: 20  VNVLVEAAQQLTLSRVGTDSRQIDRNELFVALVGERFDAHDFLSDAAKAGTGAALISS-- 77

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
                     ++ P + V NTR  L   A      HP  +  VTG++GK++V   +  I 
Sbjct: 78  -----QDKCPADLPAICVSNTRVGLGNLAKAWRANHPIPLALVTGSNGKTTVKEMIASIF 132

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + +      +     +++           P+ L K  S      +  V +  +  G    
Sbjct: 133 KAAVGEQHTLVTKGNLNNDI-------GLPLTLLKLRSTDR---LAVVELGMNHPGETAQ 182

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                +       N  R+H ++  T  A            LP +  AI  AD  ++    
Sbjct: 183 LAVIAQANIALINNAQREHQEFMATVAAVAEEHSDAIRT-LPSDGVAIFPADSEFAGVWR 241

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           + A         +              + +   V I  E    +      G   V NAL 
Sbjct: 242 QAAAGRKVIDFVLSSAQTKASAAVTGCLLSNGLVQIKSEQGTIEVQLNTLGSHNVRNALA 301

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A+ + IA G+    + + LE    V GR +    +S    I   Y    +S+ + +  ++
Sbjct: 302 ASAVGIAAGVSLEKIKQGLESFSPVNGRMQAKAIDSSRTLIDDSYNANPDSVRVAIDALK 361

Query: 378 TITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
              +   +++   G  G++       +G  A +
Sbjct: 362 QSGNLSWLILGDMGEVGNQGPEFHREVGAYAAE 394


>gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
 gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
          Length = 453

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 133/400 (33%), Gaps = 28/400 (7%)

Query: 9   KDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           K    L+  ++       +R+  + VS+D+R      +FV + G + DGH FI QAI  G
Sbjct: 2   KIDASLLKSIAKGSRLKEDRRGFSGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A   +       +     +     +  V++T K L   A     K    ++ +TG++GK+
Sbjct: 62  ATGALW---KEQEPVPEQLPETFQLYYVEDTLKALQALAQAYREKVNPFVIGITGSNGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    V  +   +       G  +               P+ L    +         V +
Sbjct: 119 TTKDIVASVLAGTAAVHKTKGNLNNH----------IGVPLTLL---AMPEDCTYAVVEM 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             + H  +   L  I     +      D    H   +    A      + L KES  +  
Sbjct: 166 GMN-HAGEISTLTQIAKPNAAIITSIGDAHIEHLGSREGIAAAKMEIADGLIKESWLLFD 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+       ++         +    G         +     +           +   + 
Sbjct: 225 GDEPLLSPYNEQ---------AETTVGFSDQAATKISDVKTLENGYVFYLNGARWQLTML 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NA  A  L   +G  +A++ + L  L +   R E +   +    I   Y     
Sbjct: 276 GKHNVKNAAYAILLAQKLGFSNAMIQKQLSSLAITGMRLEKLKGPNGSTIINDAYNANPT 335

Query: 368 SLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           S++  ++ ++ +    R ++V G   +  Q +  +   +A
Sbjct: 336 SMKAAIETVKELPHYKRRVLVLGDIYELGQDEEALHKSVA 375


>gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 454

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 149/440 (33%), Gaps = 55/440 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      +  E+            + +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKL------NLHEIAKVVGAKNTISDFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A                    P ++VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSEREVE----------GHPYILVDDCLEAFQALASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G  +          L  P             
Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGNYNNEIGLPY-TALHMPDDTEKIVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H+  E +   +    L G              H+++  +++    AK +L     
Sbjct: 163 HMGDIHLLSELAKPHIGVVTLIG------------EAHLEFFGSREKI--AKGKLQIVDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +I   D+     +  +             G    +       +K  +T +    
Sbjct: 209 MDSDGILIAPVDSIVDPYLPESQMVI-------RFGDGAEIFVKDLQESKDSLTFTTNVI 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    +    +
Sbjct: 262 DRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDLA 410
              Y     ++ +IL+    I     G+ I V     +      +  KR IM  ++ +  
Sbjct: 322 SDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIM-SLSPETL 380

Query: 411 DIAIVTDDNPRSEDPEKIRA 430
           D  I        ED  ++  
Sbjct: 381 DTLIF-----YGEDIAELAQ 395


>gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 503

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 155/397 (39%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G +++A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYIALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV+NT   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVDR--------LLPALSVPQVVVENTELALARVAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   +  +  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDNADFAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTA-LPA 217

Query: 241 ESPAIIYADDAYSKE----VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+       ++ +       +         I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLQISADITARQLQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR +   T   G 
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGDGWLVLGDMRE 373


>gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 456

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 147/407 (36%), Gaps = 30/407 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            F EL+  L    +   + + + VS+DSR IQAG +FVA+ G + DGH ++ Q  A+GA 
Sbjct: 6   TFAELLVPLDARRVGG-DCRFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQVAAKGAV 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSS 128
             +V              +  P LVV +TRK L+   +        + + AVTG+SGK++
Sbjct: 65  GALVEREVE--------GATLPQLVVLDTRKALAQLGAMNRNAFVDKPVAAVTGSSGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  I +  G      G  +             P                   + + 
Sbjct: 117 VKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE-------------YTSAVIELG 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS  G   + +   K      TN G  H+           A      E L     A++  
Sbjct: 164 ASRVGEIAYTVSLTKPHVAMITNAGSAHVGEFGGPDKIVEA-KGEILEGLDATGTAVLNL 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLP 307
           +D       KRA N      ++      ++   +          T++           L 
Sbjct: 223 EDKAFPIWRKRAGNRAVLTFALADTAADLYASDLSRDARGCPGFTLNSPLGKAQVQLNLL 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL AA    A+G+    ++  L  +  V GR      ++    I   Y     
Sbjct: 283 GAHNVTNALTAAAAACALGVSLEGIVTGLNNVQPVKGRAVAQIASNGVRVIDDTYNANPA 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
           S+   +  +    +GR ++V G  G+     +QG R +    A  ++
Sbjct: 343 SINAAVDVLTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388


>gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
 gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
          Length = 480

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 151/456 (33%), Gaps = 34/456 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               + ++  +S DSR      +FV ++G K+DGH FI  A+ QGA A+  S      + 
Sbjct: 23  SGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEE 82

Query: 83  SATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                        + VD+TR+ L    + +  +    ++ +TG+ GK++    V      
Sbjct: 83  VKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSA 142

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                      ++              P+ L++      +  +  + +  S  G      
Sbjct: 143 GFHVFKTPANHNSQ----------VGVPLTLSQISD---TDEIGVLELGMSEPGEMTVIA 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
               +     TN+G  HI+   T++     K+++ + +       +   +D      + R
Sbjct: 190 QIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLG---ISR 246

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A      V     +        +         T+    +       + GE  V NAL A 
Sbjct: 247 AREGHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAAL 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            +    G+      E L +      R +      +G  +  D Y  + +S++  L+ + +
Sbjct: 307 AVADYNGVPLEAAAEKLREFTGFKNRQQIR--EKQGITVIDDTYNASPDSMKAALRVLSS 364

Query: 379 I-TSGRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
              + R + V     +    +R     +G+         +VT      E   +I      
Sbjct: 365 FGQARRRVAVLADMKELGPDERRFHREVGEFLAGEKVELLVT----FGELAGEIGEGARE 420

Query: 435 GIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKG 468
             P        +R +        L+  D ++   KG
Sbjct: 421 RRPSLQTAAFTDREKMTEFLKRELSAGDCVLF--KG 454


>gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Clostridium cf. saccharolyticum K10]
          Length = 476

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 151/456 (33%), Gaps = 34/456 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               + ++  +S DSR      +FV ++G K+DGH FI  A+ QGA A+  S      + 
Sbjct: 19  SGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAAAVFTSEHSEESEE 78

Query: 83  SATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                        + VD+TR+ L    + +  +    ++ +TG+ GK++    V      
Sbjct: 79  VKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGKTTTREMVAAALSA 138

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                      ++              P+ L++      +  +  + +  S  G      
Sbjct: 139 GFHVFKTPANHNSQ----------VGVPLTLSQISD---TDEIGVLELGMSEPGEMTVIA 185

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
               +     TN+G  HI+   T++     K+++ + +       +   +D      + R
Sbjct: 186 QIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDNDLLG---ISR 242

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A      V     +        +         T+    +       + GE  V NAL A 
Sbjct: 243 AREGHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAAL 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            +    G+      E L +      R +      +G  +  D Y  + +S++  L+ + +
Sbjct: 303 AVADYNGVPLEAAAEKLREFTGFKNRQQIR--EKQGITVIDDTYNASPDSMKAALRVLSS 360

Query: 379 I-TSGRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
              + R + V     +    +R     +G+         +VT      E   +I      
Sbjct: 361 FGQARRRVAVLADMKELGPDERRFHREVGEFLAGEKVELLVT----FGELAGEIGEGARE 416

Query: 435 GIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKG 468
             P        +R +        L+  D ++   KG
Sbjct: 417 RRPSLQTAAFTDREKMTEFLKRELSAGDCVLF--KG 450


>gi|281420992|ref|ZP_06251991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
 gi|281404910|gb|EFB35590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
          Length = 433

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 125/377 (33%), Gaps = 21/377 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF+A+ G   DG+ F   A+ +G   ++V      ++           
Sbjct: 16  ITTDSRDCPEGSIFLALKGASFDGNKFADMALEKGCAYVIVDEKEYAKEGEER------Y 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++        A           + V G +G +   +  + +    G     +     
Sbjct: 70  ILVEDCLTTFKELAREHRRHFD---IPVVGITGTNGKTTTKELVSAVLGEKFNVMFTQGN 126

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++     +                    +  V + AS  G  +  ++ ++   G  TN+
Sbjct: 127 FNNDVGVPKTLFRLSPE----------NEIAVVEMGASHPGDIRKLVEYVEPTCGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   ++   I AD+ +  ++ ++ +           
Sbjct: 177 GRAHLQGFGSFEGVKKTKGELYDYLAANDALVFINADNEHLMQMAEQRNINRLITYGKDE 236

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                     CA   K +   +      +    L G + + N L A  + +   +    +
Sbjct: 237 NCDVWGEVISCAPFLKFRWR-TESFDWHEVQTHLIGSYNIDNMLAAITIGLHFDVKPQQI 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              LE       R +     +    +   Y    +S+   ++N R +     + + G  G
Sbjct: 296 DHALENYIPSNNRSQLE-ETAHNKLVVDAYNANPSSMAAAIENFRMMDVPHKMAILGQMG 354

Query: 393 DRDQGKRPIMGKIALDL 409
           +  +       K+   L
Sbjct: 355 ELGEVSHEEHQKVVDQL 371


>gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis bv. 3 str. 686]
 gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
 gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
          Length = 481

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
 gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
          Length = 463

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 92/444 (20%), Positives = 156/444 (35%), Gaps = 32/444 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA+ G   DGH F+             + A        +   +
Sbjct: 24  VSGVAFDSREVTQGDLFVAMKGEATDGHRFVD-----------QAFAQGAAGAIVSDAVD 72

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V ++   L         +    ++ VTG+ GK+     +     R+         
Sbjct: 73  HPHIRVADSAAALQALGIASRRRMGGKVIGVTGSVGKTGTKEALYLALDRAA-------- 124

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   +        P+ LA+     +        +  +  G        ++  A   
Sbjct: 125 PGQAHRSVKSYNNHVGVPLSLARMPRDSA---YGIFEMGMNHAGELSALTHQVRPHAAIV 181

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   HI++  T+     AK  +FE  L   + AII  D  +   +  +A     R+L+
Sbjct: 182 TAIAPAHIEFFGTEAKIAEAKAEIFEG-LEPGAAAIIPYDSPHVATLYNKAERHAARILT 240

Query: 270 VGY--QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G   Q     L+ V A +    VT  +   +  F    PG+  V NAL       A+G 
Sbjct: 241 FGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSNALAVLAAVEAVGG 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384
           D A     L ++  +PGR E       GG   +    Y     S+   LK +    + R 
Sbjct: 301 DLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSMAATLKQLGREHADRR 360

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           I V G   +       +   +A  LAD AI       +E      A+ + G   +    +
Sbjct: 361 IAVLGGMRELGSASADLHAGLAKPLADGAIDFAVLVGAE--MAPLADALEGTMAYAHVPD 418

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
              AI    + +   D ++V  KG
Sbjct: 419 AASAIPLIKKEMRAGDAILV--KG 440


>gi|297521715|ref|ZP_06940101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 91

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            AD+A+VTDDNPR+E+P  I  +I+ G+           R EA+  A+    + DV++VA
Sbjct: 1   FADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVA 60

Query: 466 GKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
           GKGHE   IV N       D   +  +LG+I
Sbjct: 61  GKGHEDYQIVGNQRLDY-SDRVTVARLLGVI 90


>gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 438

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 153/457 (33%), Gaps = 56/457 (12%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + ER I ++  DSR    G +FV I+G  +DGH FI  A+ +GA A++ S   +      
Sbjct: 9   FDERGIEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTELKKK- 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                     V +TR  L         +    ++ VTG+SGK+++ S +           
Sbjct: 68  --YPEVRFWQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSSERRVF 125

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-K 203
              G  ++              PI L +     +   +  + +  S  G +  R+  I +
Sbjct: 126 QTAGNANSQ----------LGVPITLFQLARSGA--EIAVLELGMSEPG-EMTRIASIAR 172

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +     TN+G  HI+  +T++     K+    +     +   +  +D     + +   + 
Sbjct: 173 VDLALITNIGTAHIENLKTKENILLEKLH-ILDGAADGAALYLNGEDPLLASLTEERIHD 231

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                                I   ++V +     + +      G     NA  A  + +
Sbjct: 232 -------------------LGISLGKRVELHFYRAEEEIPLSAAGHHMQQNAAAALAVSL 272

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+    VL  L     + GR E + + S  G +   Y  + ++L+  L  +      R
Sbjct: 273 DLGLQREGVLRALRGFSGLKGRGEKLLSRSGIGILDDSYNASPDALKASLLVLSKEKGRR 332

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
            I +       G+R +      G     L  D  ++       E    I   I       
Sbjct: 333 KIALLSDMLELGERSEELHEDCGAFLSSLPIDRVLL-----YGEKSLGILRGIRREEKRR 387

Query: 439 -------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       N  E  R  +      D+++   KG
Sbjct: 388 GDGRQIPVSHFSNAEELYRELLREAAPGDLVLF--KG 422


>gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
 gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri]
 gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
          Length = 459

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 85/470 (18%), Positives = 163/470 (34%), Gaps = 37/470 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      +          QW++ ++  VS DSRH+  G +FV + G + DGH ++
Sbjct: 3   MKLAEIAKAINAQ------NDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   GA A + +S + + D +       P+LVV +    L         K    ++AV
Sbjct: 56  PSAFTNGAVASLWASDHEITDQTH------PLLVVSDPLAALQQLGKYYLHKINPIVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I       +      +               P+ L    S   + 
Sbjct: 110 TGSNGKTTTKDMIASILSTQFNVAKTYANFN----------NEIGVPVTLLNMES---NT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G     L  +     +   +  +        +             L +
Sbjct: 157 EAVVVEMGMDRFG-QLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+     + +R  +   R +  G Q              +Q      E  D 
Sbjct: 216 DGTLVFNGDEP---LLEERVKDLAQRQMRFGRQLSNNLYATSVHDEPRQLSFTVNEWPDE 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ GE+ + NAL A  +   + I  A + + L  + +   R E+V   +    +  
Sbjct: 273 EFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVKGKNGEQILSD 332

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     + + +LK I      GR I V G   +       +   +A ++ D   +    
Sbjct: 333 VYNSNPTAAKEVLKTIAETPVAGRRIAVLGDMLELGDAAAKLHASLAEEI-DHQKIASVY 391

Query: 420 PRSEDPEKIRAE-IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E  + ++ + I  G P          +  + I      L   D++++
Sbjct: 392 LVGEQMKNLKDKLIQEGYPAEDIYHYAASDLQQLIADLTTTLTGDDIVLL 441


>gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
 gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
          Length = 481

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 158/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
 gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
          Length = 456

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 141/411 (34%), Gaps = 30/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  K+       +     +   +++  V+ DSR IQ   +F+AI G + DGH+FI
Sbjct: 1   MK--NMTLKEIAVACGGIYYGDDENYYKEVTGVTIDSRKIQKDCLFIAIRGARVDGHMFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ+I  GA   V         +        P ++V++  + L   A          ++ +
Sbjct: 59  PQSIHDGALCAVSEKRIESASY--------PYIMVNSCAQALKDIAEHYRRSLRLKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G+ GK+S    +  +  +        G  +               P+ +          
Sbjct: 111 SGSVGKTSTKEMIASVLGQKYNVLKTEGNFN----------NEIGLPLTIFNIREE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  S  G  +      +      TN+G  H++  ++++    AK  +F  + PK
Sbjct: 158 EVAVLEMGISDFGEMERLAKMARPDVCVLTNIGCAHLEQLKSREGILKAKTEMFLYMNPK 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   DD  +              L          ++ +                +F
Sbjct: 218 GDIILNGDDDMLASVTPANHIEPVFFGLDPALAYSAEDIENLGLKG--TSALFHTPDSEF 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   VYNAL A  +   +G++   + + +E L  + GR   + T         
Sbjct: 276 GAHISIPGAHMVYNALAAIAVGRVLGMNDGEIRQGIESLVPLAGRNNLIETEFLTIIDDC 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
            Y     S++  L  +     G  + + G     G +        G+ A +
Sbjct: 336 -YNANPASMKASLDVLSK-AKGHTVAILGDMFELGPKAHEMHCETGEFAAE 384


>gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 466

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + AS  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGASHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     ++    AK  ++  +LP     +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDD----FTAEILDA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +S    G  ++   V  +      ++           P  GE  V NA  A    
Sbjct: 245 AKAHRISTFGVGGDVYATDVELLPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +AIGI    +++ LE+     GR  F+  +     I   Y     S+    + +      
Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPY-LFIDDTYNANPTSMRAAAQVLLQQQGV 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHYDLGRDLAELPLDHII 398


>gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 461

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 179/466 (38%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           L + +  +++   + +  QW +  IN +  DSR + +G +F+ + G K DGH FI  A +
Sbjct: 3   LTFWEIADVVQATNNW-KQWSDFTINTIEFDSRQLASGSLFIPL-GGKTDGHQFIMDARS 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+A + S        S+      PIL V +T K +   A     K    ++AVTG++G
Sbjct: 61  QGAKAALWSKE------SSLAPEGFPILEVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  +  +  ++    G  +                  L   +    +  +  +
Sbjct: 115 KTTTKDMIAAVLAKKYITYKTQGNYNNQIGLPYTILHMPEETEMLVLEMGMDHADEIDFL 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           S  AS                 + T +G  HI+   ++Q    AKM + + L+       
Sbjct: 175 SQLAS-------------PTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLVEDGLLI- 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                  ++ ++K       + +            +   +  K + T  + G    F  P
Sbjct: 221 ----IPENEPLLKPLTANSTQTIKTFGFTNEADFVECVQLEEKNKTTFKLSGYQLPFTIP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG++ V NA +A  +     +    + + L ++H+   R E+V  N+    +   Y   
Sbjct: 277 VPGKYNVDNACIALIIGKWFQVPEKEMQQTLAEVHLTKNRTEWVTANNGVEILSDVYNAN 336

Query: 366 SNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
             ++ ++L +  +  T+GR IVV G   +     + +  +++  L    I       +E 
Sbjct: 337 PTAVSLVLDSFGQMFTNGRRIVVLGDMLELGATSKMMHQQLSKHLFPAIIQEVFLYGTEM 396

Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   I  +       +  K  +   I      L   D+L+V  KG
Sbjct: 397 KNLFLILEKTYGNHVHYYPKMEKEHLIVYLKATLQPNDLLLV--KG 440


>gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 450

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 163/449 (36%), Gaps = 45/449 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  + +A             + +  S     ++ L+ I+   G
Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++   H  +   + A    + +               +   + +   K+   A    
Sbjct: 184 VITHIDVQHAMHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAAERFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    + + V IS    D +     P      N ++A  L     +
Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +  + L +   RFE       G R+  D Y  + +++   L  +      G+II
Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGF 439
            + G     G         + + A+  A I     +  +      I  +    I      
Sbjct: 356 FILGHMAELGRYSDECHIAVARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E  + ++A      ++ + DV+++  KG
Sbjct: 414 SEIMDTVKA------LVQQGDVVLL--KG 434


>gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
 gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
          Length = 475

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 140/411 (34%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
               +         VS+DSR    G +FVAI G++ D H F+    A+   A +V+    
Sbjct: 20  GATVIGDDSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLADVAARNVSAALVAR--- 76

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                     + P L V +TR  L   A     K    ++AVTG++GK++V   +  I  
Sbjct: 77  -----VPGGWSVPALRVADTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFA 131

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +     ++      ++           P+ L +  +      +  V +  +  G     
Sbjct: 132 AAVGVDARLATAGNFNNDI-------GLPLTLFRLNAAHR---LAVVELGMNHPGETSLL 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +       N  R+H ++  T +A            L  +  A+  ADDAY+     
Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHA-SVIHALTPDGIAVFPADDAYASIWRV 240

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++    +      V    + + ++I       +    + G    +NAL A
Sbjct: 241 AATGNRIVDFALNTAERTTEA-AVTGTFDGKVLSIQTPEGHTNITLQVLGNHNAHNALAA 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374
               +A G+    +   LE    V GR +          G  +  D Y    +S+   + 
Sbjct: 300 TSAALAAGVSLDAIKRGLESFGAVKGRLQVKHAALGTLAGATVIDDTYNANPDSMRAAID 359

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            + +  S R++V+   G  GD        +G  A     D      D  R 
Sbjct: 360 VLASHASPRVLVMGDMGEVGDNGPEFHREIGAYAKERGIDALYAMGDASRD 410


>gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 456

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 88/416 (21%), Positives = 145/416 (34%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +   + VS+DSR IQ G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V              ++ P LVV +TRK L+   +        + + A
Sbjct: 56  EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G     +   K      TN G  H+           A      E L 
Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      +H   +          TI+    
Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 VAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    +GR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388


>gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
 gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
          Length = 482

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 142/403 (35%), Gaps = 30/403 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 +R    V+ DSR ++   IFVA  G + DG+ F  +AI  GA A+V++     +
Sbjct: 17  LAAGDPDRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRDPEDE 76

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             +        +L  D+  +FL   A     +    ++ VTG+ GK++    +     + 
Sbjct: 77  VVAMARDRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAACLSKR 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                  G          +N +  P  I     LS  +   +  + +  +  G +  RL 
Sbjct: 137 YRVHATAGN--------YNNLIGLPLTI-----LSAPADTQMLVLEMGMNDFG-EISRLT 182

Query: 201 GI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP-------KESPAIIYADDAY 252
              +   G  T +G  HI    +++    AK  + E + P         S  +++ +D +
Sbjct: 183 ACAQPTFGIITKVGTSHIGMLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDF 242

Query: 253 SKEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +  +++R        +    +           ++             +G  F     +PG
Sbjct: 243 TPYIIERYARPAGIDVVLAGTSTDDDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL AA +   +G+ +  + E    L +   R +          I   Y  +  S
Sbjct: 303 AQSVPNALFAAAVAHRLGVPAFEIDEAFASLEMTGRRAQVRHAACGARVIDDSYNASPES 362

Query: 369 LEMILKNIRTITS-GRIIVVF---GCGGDRDQGKRPIMGKIAL 407
           +   L  + ++   G  I V    G  GD       + G  A 
Sbjct: 363 MAAGLDLLGSLPCSGTRIAVLGEMGEMGDEAPRLHALTGAYAA 405


>gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 456

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 149/416 (35%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +   + VS+DSR IQ G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V              ++ P LVV +TRK L+   +        + + A
Sbjct: 56  EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+SGK++V   +  I +  G      G  +               P+ L +  S    
Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLN----------NELGVPLTLLELASE--- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G     +   K      TN G  H+           A      E L 
Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      +H   +          TI+    
Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 VAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    +GR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388


>gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 454

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 83/487 (17%), Positives = 162/487 (33%), Gaps = 67/487 (13%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKL------TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A       +            P + VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P         +   
Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGN--------YNNEIGLP-------YTALHM 148

Query: 179 SQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 + +E     + D H L  +         L  +        +           + 
Sbjct: 149 PDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +   I  AD      + +               G    +       +K+ +T +   
Sbjct: 209 MDSDGILIAPADTIVDPYLPESQMVI--------RFGDGAEIFVKDLQESKESLTFTTNV 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    +    
Sbjct: 261 IDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEWKKAANGADI 320

Query: 358 IYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDL 409
           +   Y     ++ +IL+    I     G+ I V     +      +  KR IM  ++ + 
Sbjct: 321 LSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIM-SLSPET 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDV 461
            D  I        ED  ++        P             ++ +A + T  ++L   D 
Sbjct: 380 LDTLIF-----YGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETVQKVLQPADQ 434

Query: 462 LVVAGKG 468
           +++  KG
Sbjct: 435 ILL--KG 439


>gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus ND03]
          Length = 457

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 158/485 (32%), Gaps = 62/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            +++  +N++  DSR I AG +F+ + G + DGH 
Sbjct: 1   MKL------TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A               + ++   ++VD+T +     A+    K   +++
Sbjct: 54  FIQTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G          +N +  P         +   
Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +E     +    L        +                    A+ ++  +  
Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   ++   D      +                G    L        K  +T S +  
Sbjct: 210 MPDGSLLLVPCDPIVDPFLPSNLEVV-------RFGDGAELTVSELTEYKDHLTFSTKFL 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    +    +
Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 322

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411
              Y     +++++L+    I     G+ I V       G++       M       A D
Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
             I        ED  ++        P             ++ +A ++   E L + D ++
Sbjct: 383 TVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQIL 437

Query: 464 VAGKG 468
           +  KG
Sbjct: 438 L--KG 440


>gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
 gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
          Length = 451

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 159/473 (33%), Gaps = 50/473 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +QD++      L+   +  P       IN +S+DSR +    +FV IVG + + H F+
Sbjct: 4   MTIQDILAATGGTLLCGDASMP-------INRLSTDSRDVGPHTLFVPIVGERVNAHKFV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  G  A +       +          PI+ V +T K +   AS    K    I+ +
Sbjct: 57  ESALKDG-GASLTQEHEQAEGPH-------PIIKVPDTLKAMQQIASFYRNKMSLPIIGI 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG+ GK++    +  + +        +G   S +      +RLT+   I +         
Sbjct: 109 TGSVGKTTTREMIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGV--------- 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  S  G      + I+  A   TN+G  HI+   ++      K+ +   L  
Sbjct: 160 -----LEMGMSEPGQITILGEIIRPNAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPE 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   +D   K +    +           +      +    I+ +   T   E   
Sbjct: 215 NGVLYLNGDNDMIRKHI---GYVTHPYEFFGFSKDCSYRAEDSKEINGQTHFTFVHEDMR 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  + G   V NAL A  L +A  +    +   L          +        G   
Sbjct: 272 EPVILNVLGNHNVSNALAAIALGLAYDVPMETIKRQLATFSG-----QRQNILKIHGYTV 326

Query: 360 VDYAHT--SNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
           +D A+    +S++  LK +      GR + V       G         +G+     AD  
Sbjct: 327 IDDAYNASPDSMKAGLKILSDYQDSGRKVAVLSDMLELGPDSPDYHREVGEFLGT-AD-- 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVV 464
            +TD        ++              K   +  E I    + L + DV+++
Sbjct: 384 -ITDLYITGTLSKEYAEAAQKKNLSLKTKWFSSNDELISYLKDYLKEHDVVLI 435


>gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas aeruginosa PAb1]
          Length = 458

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 144/410 (35%), Gaps = 32/410 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L       LI +         +   + VS+DSR I  G +F+A+ G + DGH ++ 
Sbjct: 6   RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLS 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+T
Sbjct: 57  EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++V   +  I +         G   ++ +   +       P+ L +         
Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G   + ++  +      TN G  H+      +    A      E L  +
Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             A++  DD        RA        S+           +           +     + 
Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NAL AA    A+G+    ++  L+ L  V GR     T S    I  
Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIAL 407
            Y     S+   +  +    SGR ++V G  G+     +     +G  A 
Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGELGSWAEEAHREVGAYAA 387


>gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris]
          Length = 494

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 158/397 (39%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R + +G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV NT   L+  A+ +       ++A+
Sbjct: 55  ADAVARGASGLLVDR--------LLPALHVPQVVVANTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G      G T+  +   ++N +  P  +  A   + L+  
Sbjct: 107 TGSNGKTSVKALLLAILAEAG---RVDGITAYANPGNRNNEIGLPLAVIAAPDDADLA-- 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 162 ---VYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   V   G      I  +++       Q  + + 
Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLVIP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +   + PLPG   V NAL A GL +  GI   ++   L +   V GR +   T + G 
Sbjct: 278 QGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLTTGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
 gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
          Length = 422

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 140/436 (32%), Gaps = 43/436 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +    DSR +  G +FVAI G K DGH +  +AI +GA  +V                  
Sbjct: 5   SRFVVDSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEKKLQHIPEEK------ 58

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V++T +FL   A     KH   ++ +TG++GK++    + Q+  +           
Sbjct: 59  -LITVNDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGKDR--------- 108

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +  +    +  +  P  I     L+  +++    + +  +  G                 
Sbjct: 109 AFRNPGNLNTEIGLPLSI-----LNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAILL 163

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H      Q+     K++L E +    +  ++Y      +  +K     G +    
Sbjct: 164 NVGTAHRGIAGNQEMILRGKLQLIENMQKNGTAIVLYDKKLLDRISLKPMVTFGYKKGDY 223

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                        A +   +  +    K       L       N          +GID  
Sbjct: 224 QLVDYCYIDFSTKAFYKTPREQLIFNLKSIWNAGQLT------NISAVLAALDILGIDCN 277

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV-- 387
             +           R      N  G  +  D Y  +  S E  ++ I+ +      VV  
Sbjct: 278 KNILENFTPVAGRFRV----MNCNGIYVVDDTYNASIESFETAVETIKKLGKRSFAVVGS 333

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               G         +G+I   L  + +   DN       +I  EI++         +  E
Sbjct: 334 IKEQGKYSIETHRKLGEILEKLDGVVVYNVDN-------EI--EIMNCSKKIFASNSATE 384

Query: 448 AIRTAIEMLNKQDVLV 463
                  +L   DV++
Sbjct: 385 ISDFLKRILIPGDVVL 400


>gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 458

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 29/393 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L       LI +         +   + VS+DSR I  G +F+A+ G + DGH ++ 
Sbjct: 6   RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLS 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+T
Sbjct: 57  EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++V   +  I +         G   ++ +   +       P+ L +         
Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G   + ++  +      TN G  H+      +    A      E L  +
Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             A++  DD        RA        S+           +           +     + 
Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NAL AA    A+G+    ++  L+ L  V GR     T S    I  
Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            Y     S+   +  +    SGR ++V G  G+
Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGE 370


>gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 456

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 145/416 (34%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +   + VS+DSR IQ G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V              ++ P LVV +TRK L+   +        + + A
Sbjct: 56  EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G     +   K      TN G  H+           A      E L 
Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      +H   +          TI+    
Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 VAQVQLNLLGAHNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    SGR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-SGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388


>gi|298241040|ref|ZP_06964847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554094|gb|EFH87958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 474

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 140/482 (29%), Gaps = 40/482 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D++  +  ++  Q S  P             DSR I  G +F+A  G   DGH FIP 
Sbjct: 4   LNDIVQSNTDQIHIQSSTTPDPA--LVFRSAHHDSRLITPGDLFIARKGTNSDGHHFIPA 61

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-ILAVT 121
                  A   + A      +  +  +   ++V +    L   A     +  +   + +T
Sbjct: 62  ------AARAGALAALCSTPANDVPPDFLQIIVPDVLTALHATARARTQRQKDTVRIGIT 115

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +      +       +    +          PI L           
Sbjct: 116 GSNGKTSTKDAVAAVLSHKAPTLKTYASYNHELGY----------PITLL---HLEPQHR 162

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + A   G      + I     S           +   Q           ++L  +
Sbjct: 163 YAVLEMGAQCVGELTWLCNSIASPHWSIITTVGAAHLEYFGTQERVAIAKSELVQVLTPD 222

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI+  DD   + +  +           G                    T+    +   
Sbjct: 223 GFAILNYDDELVRAMAAKTQARIL-YYGTGEGATVRASNIGGDTLFGHSFTLHYHDQQQP 281

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPGE  V  AL AA    A  +    +   LE L   PGR E     +    I   
Sbjct: 282 VQLRLPGEHGVTIALAAAATGCAAEMSLDDIASALEDLSPAPGRCEIKPGPNNSTLIDDS 341

Query: 362 YAHTSNSLEMILKNIR---TITSGRIIVVFG---CGGDRDQGKRPIMGKIALDLADIAIV 415
           Y     S+  I   +       +G+   + G     G   + +    G     L D  I 
Sbjct: 342 YNANRQSIIAITSAMHNTSQAPNGKRWAILGDIFQLGTYARAEHSTCGSSLAGLVDYLIA 401

Query: 416 TDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTAIEML-----NKQDVLVVAG 466
             D  R      I + +           +     +EA + A   L        D++++  
Sbjct: 402 IGDQARFYVEGAIASGMPEKNAYYFSADVNNSAELEAAKRAAADLLKHEVRPGDLVLL-- 459

Query: 467 KG 468
           KG
Sbjct: 460 KG 461


>gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
          Length = 454

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 78/440 (17%), Positives = 143/440 (32%), Gaps = 55/440 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKL------TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A                    P ++VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSERKVE----------GHPYILVDDCLQAFQELASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGN-YNNEIGLPYTALHMPDDTEKIVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H+  E +   +    L G   +    +                  AK +L     
Sbjct: 163 HMGDIHLLSELAKPHIGVVTLIGEAHLEFFGS--------------RDKIAKGKLQIVDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +I   D+     +                G    +       +K  +T +    
Sbjct: 209 MDSDGILIAPADSIVDPYLPEGQMVI-------RFGDGAEISVNDLQESKDSLTFTTNVI 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    +    +
Sbjct: 262 NRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALENIELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDLA 410
              Y     ++ +IL+    I     G+ I V     +      +  KR IM  ++ D+ 
Sbjct: 322 SDVYNANPTAMRLILETFSKIPANSGGKKIAVLADMKELGEQSVELHKRMIM-SLSPDVL 380

Query: 411 DIAIVTDDNPRSEDPEKIRA 430
           D  I        ED  ++  
Sbjct: 381 DTLIF-----YGEDIAELAQ 395


>gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
 gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
          Length = 468

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 129/408 (31%), Gaps = 33/408 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L+     ++   +   P       +  + +DSR ++ G +FV ++G + D H F  Q
Sbjct: 15  LSKLL---IAQVNQGVPELPSA-----VRLIQTDSRLVEKGDLFVCLIGERFDAHDFAGQ 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +  GA A+V +    L              VV++TR  L   AS    +    +LAV G
Sbjct: 67  VMKSGAAALVTNRVLDLP---------IHQFVVNDTRLALGALASAWRQQFDLKVLAVVG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    +  IC+        +     +++                  L       +
Sbjct: 118 SNGKTTSKEMLGGICKAQCGDDQVLVTAGNLNNDIGVP----------QTLLKLRPQHQM 167

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +  G   +    +K      TN  R+H ++ +T  A  N     F   L    
Sbjct: 168 AVIEMGMNHPGEIDYLAGLVKPDVVLLTNAQREHQEFMKTVLAVANENGSAFTH-LSSNG 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+    D +       +          G   + +  +            +    +    
Sbjct: 227 CAVFPVSDEFDACWQALSTGKSTLRFGSGADFEILPPRSDFGQSAVVLRALDAPIE---L 283

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                GE    NA  AA    A G     +   L     V GR +          I   Y
Sbjct: 284 RPNFIGEHNYANAAGAAAAAHAAGCTHEAIQAGLNAFQPVNGRLQVALNTPSILLINDSY 343

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
               +S+    K +       ++V+   G  G++       +G  A  
Sbjct: 344 NANPDSVNAASKVLGQQAGSTLLVLGDMGEVGNQSDEYHAEVGSYAKQ 391


>gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
 gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
          Length = 482

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 159/463 (34%), Gaps = 34/463 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               +R    V  DSR +    +FVA  G + DG+ F P AI  GA A+V++   + +  
Sbjct: 19  AGDPDRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVVMTCEPTRELV 78

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              +   + ILV ++  +FL   A     +    ++ +TG+ GK++    +     +   
Sbjct: 79  DLALEHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDVLAACLAKRYR 138

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +++             P+ +    S  +   +  + +  S  G  +      
Sbjct: 139 VHATAGNFNSL----------IGLPLTIL---SAPADTQMLVLEMGMSDFGEIERLSRCA 185

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF-------EELLPKESPAIIYADDAYSKE 255
           +   G  T +G  HI    +++    AK  +        E      S  +++ +D ++  
Sbjct: 186 QPTFGIITKVGTSHIGMLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPF 245

Query: 256 VMKRAHNAG----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +++              +           ++             +G  F     +PG   
Sbjct: 246 IIENFARPAGLDVVLAGTSTDDDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPGAQS 305

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL AA +   +G+    + E   +L +   R +          I   Y  +  S+  
Sbjct: 306 VPNALFAAAVAHRLGVPGFEIDEAFGELQMTGRRTQVRHAACGARVIDDSYNASPESMAA 365

Query: 372 ILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP 425
            L    T+   G  I V G     GD  +    ++G  A     + +  V  +N R    
Sbjct: 366 GLNLFSTLPCTGSRIAVLGEMGELGDDAERLHALVGAYAAAKRPSMLICVGGENARVM-- 423

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +           +    IR    ++ ++D+++V  KG
Sbjct: 424 ADAARLMGLDEGDVQVVPSCDALIRRYAGVMGERDLVLV--KG 464


>gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
 gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
          Length = 462

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 140/399 (35%), Gaps = 35/399 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ VS D+R ++ G +FV +VG + DGH F+PQA+A GA  ++ + A          
Sbjct: 22  DFAVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAVANGAAGVLAARAV--------- 71

Query: 87  RSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             + P ++V +T K L     +           AVTG+ GK+SV   ++   + +G +  
Sbjct: 72  --DAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKTSVTRAIEAGLRLAGKAHA 129

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +                   P+ LA+                A         +   +  
Sbjct: 130 SVKS----------YNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSGFV---RPH 176

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A + T +G  HI+     +A            L     A++ AD+ +   +   A   G 
Sbjct: 177 AVAITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEAEKVGA 236

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            V S G   G    L           V++ + G+   F     G     N+L    +  A
Sbjct: 237 TVWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCVLLMLEA 296

Query: 325 IGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNI--RTI 379
           + +     L  L     + GR  E       G    VD  Y     S++  LK +  R +
Sbjct: 297 LDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKTLGARKV 356

Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGK-IALDLADIAIV 415
              R++ +      G+        + + IA    D   +
Sbjct: 357 AGRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFL 395


>gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 495

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 153/397 (38%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRALSNGSLYVALRGERVDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+AQGA  ++V                 P +VV NT   L+  A+ +       ++A+
Sbjct: 55  ADALAQGASGLLVER--------LLPTLGVPQVVVQNTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G      G T   +   ++N +  P  +  A   + ++  
Sbjct: 107 TGSNGKTSVKALLLAILTEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDDADVAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTDIARPQVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPS 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++ H        V   G      I  +++    +  Q T+   
Sbjct: 218 DGVAVINADDAFGAWFEQQLHAQPVPGRRVLRYGLQASADIRARQLRLQADGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L +   V GR +       G 
Sbjct: 278 QGEAQVTLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQARPVAGR-QIAHRLPGGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLVDDSYNANPGSLDAAIDALAAAPGDGWLVLGDMRE 373


>gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
 gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
          Length = 454

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 85/495 (17%), Positives = 165/495 (33%), Gaps = 67/495 (13%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKL------TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A       +            P + VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P         +   
Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGN--------YNNEIGLP-------YTALHM 148

Query: 179 SQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 + +E     + D H L  +         L  +        +           + 
Sbjct: 149 PDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +   I  AD      + +               G    +       +K+ +T +   
Sbjct: 209 MDSDGILIAPADTIVDPYLPESQMVI--------RFGDGAEIFVKDLQESKESLTFTTNV 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    +    
Sbjct: 261 IDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEWKKAANGADI 320

Query: 358 IYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDL 409
           +   Y     ++ +IL+    I     G+ I V     +      +  KR IM  ++ + 
Sbjct: 321 LSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIM-SLSPET 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEM-LNKQDV 461
            D  I        ED  ++        P             N+ +A+   I+  L   D 
Sbjct: 380 LDTLIF-----YGEDIAELAQLASQMFPIGKVYYFKKTADENQFDAMLETIQKVLQPADQ 434

Query: 462 LVVAGKGHETVHIVT 476
           +++  KG  ++ +V 
Sbjct: 435 ILL--KGSNSMQLVK 447


>gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
 gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
          Length = 453

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 162/460 (35%), Gaps = 39/460 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +     VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V 
Sbjct: 9   LAQLTQGQLIGDDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A  L             +VV +T+  L    + ++ +     +A+TG+ GK++V   V 
Sbjct: 69  RALDLP---------VAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +           + P                   + + A+  G 
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPE-------------DDFAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    ++       N+   H++   +      AK  +++ L       +         
Sbjct: 167 IAYTTQLVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEY 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                A        +   Q  F     V     K    +    +       + G+  V N
Sbjct: 227 WTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVAN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A+ + +  G   A +   L  L  V GR +    +     I   Y  +  +++  + 
Sbjct: 287 AIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAVD 346

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            + + T  R +V+      G+        +G+ A  L    ++T      ED   I +++
Sbjct: 347 LLGSFTGQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLT----YGEDTR-IISQL 401

Query: 433 IHGIPGFIEKGNRIEAIRTAIE-MLNKQD---VLVVAGKG 468
             G        +  E I    + + N+ +    ++V  KG
Sbjct: 402 CGG----KHFSDHGELIEYIKQNLANENEACHTVLV--KG 435


>gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
 gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
          Length = 452

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 149/419 (35%), Gaps = 35/419 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+           + +I+ VS+DSRHI    +FVA++G + D H FI
Sbjct: 4   MLLSEIAKACDGRLVG---------ADCQISSVSTDSRHIDEEGLFVALIGERFDAHDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P    QGA A++VS             +  P ++V +T+K L L A  ++        A+
Sbjct: 55  PAVQEQGATALLVSKEVD---------TTLPQVIVSDTQKALGLVAKHVHQVCHTFTFAL 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V   +  I  RSG      G  +           + PS  +    L      
Sbjct: 106 TGSCGKTTVKEMLASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQN 165

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +++ +  A             +       N+   H++   + +    AK  +FE  L +
Sbjct: 166 EISYTTQLA-------------QPNVALVNNIAAAHLEGFGSIEGVAKAKGEIFEG-LQE 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKD 299
              AI   D     +             ++       +   +      +    ++    +
Sbjct: 212 NGIAIYNLDSNGLPKWSSLFEGKQVVSFAMDDSSADFYASNIEVNAIGEPSFQLNTPKGN 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G+  V NA+ AA L I        + + L++L  V GR       S    I 
Sbjct: 272 IQVSLGIIGKHNVANAVAAAALAIQAHASLNDIQQGLQELGSVKGRVAVETLASGLKVID 331

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             Y  +  +++  +  +      R +V+      G+        +G+ A       +VT
Sbjct: 332 DTYNASVPAMKAAVDLLGGFKGQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVT 390


>gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 494

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 158/397 (39%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R + +G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV NT   L+  A+ +       ++A+
Sbjct: 55  ADAVARGASGLLVDR--------LLPALHVPQVVVANTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I   +G      G T+  +   ++N +  P  +  A   + L+  
Sbjct: 107 TGSNGKTSVKALLLAILAEAG---RVDGITAYANPGNRNNEIGLPLAVIAAPDDADLA-- 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 162 ---VYEMGAGKPGDIAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   V   G      I  +++       Q  ++  
Sbjct: 218 DGVAVINADDAFGAWFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLATP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +   + PLPG   V NAL A GL +  GI   ++   L +   V GR +   T + G 
Sbjct: 278 QGEAPVVLPLPGRHNVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLATGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
 gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 459

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 85/470 (18%), Positives = 164/470 (34%), Gaps = 37/470 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      +          QW++ ++  VS DSRH+  G +FV + G + DGH ++
Sbjct: 3   MKLAEIAKAINAQ------NDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   GA A + +S + + D +       P+LVV +    L         K    ++AV
Sbjct: 56  PSAFTNGAVASLWASDHEITDQTH------PLLVVSDPLAALQQLGKYYLHKINPIVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I       +      +               P+ L    S   + 
Sbjct: 110 TGSNGKTTTKDMIASILSTQFNVAKTYANFN----------NEIGVPVTLLNMES---NT 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G     L  +     +   +  +        +             L +
Sbjct: 157 EAVVVEMGMDRFG-QLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+     + +R  +   R +  G Q              +Q      E  D 
Sbjct: 216 DGTLVFNGDEP---LLEERVKDLAQRQMRFGRQLSNNLYATSVHDEPRQLSFTVNEWPDE 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ GE+ + NAL A  +   + I  A + + L  + +   R E+V   +    +  
Sbjct: 273 EFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVKGKNGEQILSD 332

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     + + +LK I      GR I V G   +       +   +A ++ D   +    
Sbjct: 333 VYNSNPTAAKEVLKTIAETPVAGRRIAVLGDMLELGDAAAKLHASLAEEI-DHQKIASVY 391

Query: 420 PRSEDPEKIRAE-IIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E  + ++ + I  G P          +  + I      L  +D++++
Sbjct: 392 LVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADLTATLTGEDIVLL 441


>gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMD-9]
 gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus LMD-9]
          Length = 457

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 160/483 (33%), Gaps = 58/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  E++         +++  +N++  DSR I AG +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEIAEVVGA-KNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A               + ++   ++VD+T +     A+    K   +++AV
Sbjct: 56  QTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G          +N +  P         +     
Sbjct: 107 TGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHMPD 151

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +    L        +                    A+ ++  +    
Sbjct: 152 DTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMP 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   ++   D      +                G    L        K  +T S +  D 
Sbjct: 212 DGSLLLVPCDPIVDPFLPSNLEVV-------RFGDGAELTVSELTEYKDHLTFSTKFLDG 264

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    +    +  
Sbjct: 265 QVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADILSD 324

Query: 361 DYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIA 413
            Y     +++++L+    I     G+ I V       G++       M       A D  
Sbjct: 325 VYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTV 384

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLVVA 465
           I        ED  ++        P             ++ +A ++   E L + D +++ 
Sbjct: 385 IF-----YGEDIAELSQLASQMFPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILL- 438

Query: 466 GKG 468
            KG
Sbjct: 439 -KG 440


>gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
 gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
          Length = 477

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 86/466 (18%), Positives = 159/466 (34%), Gaps = 34/466 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              ++I   +  P+      I  +S DSR ++ G  F AI G++ DGH +   A+A GA 
Sbjct: 6   TVADMIAITAGRPVGNLPTGITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV+ A       A  R   P++VV++    L   A     +    I+AVTG+ GK++ 
Sbjct: 66  LLVVAEA----KLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++Q    SG     +   +               P+ LA+  +           +  
Sbjct: 122 KEMLRQALAPSGRVHAAVASFNNHWGV----------PLTLARMPAD---TEFGVFEIGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G  +  +  ++      T +   H+   +  +    AK  +FE +    S  +   +
Sbjct: 169 NHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDN 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
             + +            +L+ G   K    L    +      +   + G+  +    +PG
Sbjct: 229 AQFEQLEEAAQEAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHT 365
                NA+   G     G +    LE L  L  V GR +       GG   +    Y   
Sbjct: 289 RHIADNAMAVLGAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNAN 348

Query: 366 SNSLEMILKNIRT---ITSGRIIVVFGC---GGDRDQGKRPIM-GKIALDLADIAIVTDD 418
             S+   +  +        GR + V G     G+        + G +     +   +   
Sbjct: 349 PASMRAAIAVLAETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWL--- 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E    +R  +   +   I      E    A++ +   D L+V
Sbjct: 406 --AGEAMAALRDALPDSVT-VIWFPTTAELTDFALQWVQPGDALMV 448


>gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
 gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
          Length = 475

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 142/411 (34%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
               +         VS+DSR    G +FVA+ G++ D H F+    A+   A++V+    
Sbjct: 20  GATLVGDESAAFERVSTDSRSAGPGDLFVALKGDRFDAHDFLADVAARNVSAVLVAR--- 76

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                       P + V +TR  L   A     K    ++AVTG++GK++V   +  I  
Sbjct: 77  -----VPDGWTVPAVRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKTTVKEMIASIFA 131

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  ++ ++      ++           P+ L +  +      +  V +  +  G     
Sbjct: 132 AAVGAAERLATAGNFNNDV-------GLPLTLFRLNAAHR---LAVVELGMNHPGETSLL 181

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
               +       N  R+H ++  T +A            L  E  A+  A+DAY+     
Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHA-SVIHALKPEGVAVFPANDAYASIWRV 240

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++    +      V    +   ++I            + G+   +NAL A
Sbjct: 241 AATGNRIIDFALNTAERATEA-AVTGTFDGGLLSIETPEGALQVSLQVLGDHNAHNALAA 299

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILK 374
               +A G+    +   LE    V GR +          G ++  D Y    +S+   + 
Sbjct: 300 TSAALAAGVSLDAIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNANPDSMRAAID 359

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            + +  S R++V+   G  GD        +G  A     D      D  R 
Sbjct: 360 VLASHASPRVLVMGDMGEVGDNGPEFHREIGAYAKERGVDALYAMGDASRD 410


>gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
 gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
          Length = 453

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 165/477 (34%), Gaps = 50/477 (10%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +     VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V 
Sbjct: 9   LAQLTQGQLIGDDATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAVALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A  L             +VV +T+  L    + ++ +     +A+TG+ GK++V   V 
Sbjct: 69  RALDLP---------VAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +           + P                   + + A+  G 
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPE-------------DDFAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    ++       N+   H++   +      AK  +++ L       +         
Sbjct: 167 IAYTTQLVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEY 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                A        +   Q  F     V     K    +    +       + G+  V N
Sbjct: 227 WTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPVSLGIIGQHNVAN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A+ + +  G   A +   L  L  V GR +    +     I   Y  +  +++  + 
Sbjct: 287 AIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAVD 346

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            + + T  R +V+      G+        +G+ A  L    ++T      ED   I +++
Sbjct: 347 LLGSFTGQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLT----YGEDTR-IISQL 401

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKGH-------------ETVH 473
             G   F   G  IE I+    + N+ +    ++V  KG              E   
Sbjct: 402 CGG-KHFSNHGELIEYIKQ--NLANENEACHTVLV--KGANSAGMSKVAAALKENYQ 453


>gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
 gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
          Length = 454

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 83/487 (17%), Positives = 161/487 (33%), Gaps = 67/487 (13%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  + ++  DSR I+ G +F+ + G + DGH 
Sbjct: 1   MKL------TLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A       +            P + VD+  +     AS    K   +++
Sbjct: 54  FIETAFENGAVATFSEREVA----------GHPYIWVDDCLEAFQALASYYLEKQRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P         +   
Sbjct: 104 AVTGSNGKTTTKDMIAAVLSTEYKTYKTQGN--------YNNEIGLP-------YTALHM 148

Query: 179 SQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 + +E     + D H L  +         L  +        +           + 
Sbjct: 149 PDDTEKIVLEMGQDHMGDIHLLSELAKPHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDG 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +  +   I  AD      + +               G    +       +K+ +T     
Sbjct: 209 MDSDGILIAPADTIVDPYLPESQMVI--------RFGDGAEIFVKDLQESKESLTFMTNV 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D     P+PG++   NA+VAA +   + I    ++E LE + +   R E+    +    
Sbjct: 261 IDRPITLPVPGKYNATNAMVAAYVGKLLAISDDDIVEALETIELTRNRTEWKKAANGADI 320

Query: 358 IYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD-----RDQGKRPIMGKIALDL 409
           +   Y     ++ +IL+    I     G+ I V     +      +  KR IM  ++ + 
Sbjct: 321 LSDVYNANPTAMRLILETFSKIPANEGGKKIAVLADMKELGEQSVELHKRMIM-SLSPET 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDV 461
            D  I        ED  ++        P             ++ +A + T  ++L   D 
Sbjct: 380 LDTLIF-----YGEDIAELAQLASQMFPIGKVYYFKKTADEDQFDAMLETVQKVLQPADQ 434

Query: 462 LVVAGKG 468
           +++  KG
Sbjct: 435 ILL--KG 439


>gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
 gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
          Length = 449

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 145/427 (33%), Gaps = 33/427 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKYK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++   Q   L     G  
Sbjct: 76  -IILVDDCFEALQKIALYKRENSKAKFIAITGSVGKTSTKEALKVSLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A          K   A+I AD     +++    N     +  
Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             +      + +   +  +QV +      K  D   P        N      +   +G D
Sbjct: 241 FGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +   HL  +    GR E +   +        Y  +  S++  L+ ++ + +     + 
Sbjct: 301 IEIAANHLANISPTKGRGEMINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359

Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440
           G     G+  +     + + I         +   N +  D   P KI  +    +   I 
Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELIM 419

Query: 441 EKGNRIE 447
              +  E
Sbjct: 420 HITDLFE 426


>gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
 gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
          Length = 453

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 149/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQDL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMVTNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +    A  N   V I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++      +I
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 142/416 (34%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +     VS+DSR I+ G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   +          + A
Sbjct: 56  DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + +   K      TN G  H+           A      E L 
Sbjct: 155 YTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      ++  ++          T++    
Sbjct: 214 AGGTAVLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL  A    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 TARVQLNLLGTHNVSNALAVAAASCAMGVPLEGIVTGLNNVQPVKGRAVAQIASNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    +GR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388


>gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
 gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
          Length = 459

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 171/475 (36%), Gaps = 38/475 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++      +     ++        ++  V+ DSR I+  W+F+ I G + DGH FI
Sbjct: 4   MSLQEITAACHGQYFGGEAVSH-----IEVAGVAIDSRKIEKDWLFIPIKGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + +GA   +                + P ++VD+  + L   A          ++ +
Sbjct: 59  PQVMEKGALCTLSE--------VVLENVSHPYILVDSCEQALKDIAEHYRKALDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  + ++        G  +               P+ +          
Sbjct: 111 TGSVGKTSTKEMIASVLEQKYHVLKTAGNFN----------NEIGLPLTIFNIRDE---H 157

Query: 181 GVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            +  + +  +  G + HRL    +      TN+G  H++    +     AK  +F+ + P
Sbjct: 158 EIAVLEMGINHFG-EMHRLAKMARPDICVITNIGLCHLENLIDRDGILKAKTEMFDFMQP 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DD        +        LS        ++            T+ +    
Sbjct: 217 DAKIILNGDDDKLITVTDVKGQTPMFFGLSTELDAFADNIHTHSLKG--VSCTLHLGDNC 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG   VYNAL  A +   +G+ +  + + +E L  V GR   + T+S      
Sbjct: 275 IDTMIPIPGNHMVYNALAGALVGRELGLTAEEIKKGIESLTPVSGRNNMILTDSLLIIDD 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             Y     S +  +  +    + ++ ++   F  G D  +  R +    +    D+ I  
Sbjct: 335 C-YNANPVSTKASIDVLSGAETRKVAILGDMFELGEDEKELHRQVGVHASEKGIDLVICI 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKGHE 470
            +  ++        E+  G    +    + +      E+L+K D ++V A  G E
Sbjct: 394 GELSKA--TAAGAEELSAG-NQVVHFDTKADFFTKMNELLHKDDTILVKASHGME 445


>gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
 gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
          Length = 481

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 157/444 (35%), Gaps = 29/444 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A  A  +VV    +     A   + 
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAADAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            GR I V G   +  +    +   +A  + D  + T     SE    +    +       
Sbjct: 374 RGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSE--MSVLKNALPVEIQTE 431

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
            + +  E +   ++ +   DV++V
Sbjct: 432 YRQSTDELLPLVVKAVRPGDVVMV 455


>gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium cylindroides T2-87]
          Length = 453

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 142/416 (34%), Gaps = 27/416 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I K   E+ + L+   +   +   I  V  DSR I    +++ ++G + DGH FI   I
Sbjct: 1   MIVKTIQEIADMLNCDLVGEDKTSLIQGVGIDSRQITENALYIPLIGQRADGHTFIDSVI 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +G +A +    +           +   ++VD+T + L   A          ++ VTG++
Sbjct: 61  QKGVKATLWQKDH------TPYPEDITCILVDDTLEALQNLAKAYLNTLSCLVIGVTGSN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    +  I  +   +    G         ++N +  P  +     L       V  
Sbjct: 115 GKTSCKDMLYSIFSQEKKTQKTQGN--------RNNEIGLPLTV-----LDLDKDVEVAI 161

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +   + G         +      T +G  H++    ++    AK+ + E L P     
Sbjct: 162 LEMGMENKGEIDFLTHIARPDVSIITTIGSAHMENLGGKKQIAQAKLEILENLKPGGLFL 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    + +++   +   R++S G+ G    +  +        +             
Sbjct: 222 YDKESPEIQECLLEMDIDPSKRLVSFGFNGDISIISSIDYTE--NGIEFYCSSLTDKITL 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G+FQ  NAL    + +   I ++ +L+ L+ L +   R   +        I   Y  
Sbjct: 280 NALGDFQAKNALPCIYVALDQKISTSSILKGLKDLEMTKMRTALLKV-HDAKIIDDTYKS 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIVT 416
              S +  +  +  + + + I V     D    +  +   I         D    T
Sbjct: 339 NPESAKAAIDTLMKVQAKKHIAVLADMLDLGPEENDLHAMIGCYAVEKNVDTVYAT 394


>gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
 gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
          Length = 453

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 147/395 (37%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R ++ VS+DSR I A  +FVA+VG + D H F  QA+  GA A++V      +    
Sbjct: 19  GEDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQAVTGGAIALLVQRELDAE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   LVV +T++ L    S ++ +     +A+TG+ GK++V   V  I  + G   
Sbjct: 75  -----CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +               P+ L ++ +         + + A+  G   +    +K 
Sbjct: 130 YTQGNFN----------NDIGVPLTLLRSTAE---DDYAVIELGANHVGEIAYTTALVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + AI+  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  S        + + V          T+     +      + G+  V NAL AA L +
Sbjct: 236 VKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAAAALSL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A + + L  L  V GR +          I   Y  +  +++  ++ + + ++ R
Sbjct: 296 EMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      GD        +G+ A       ++T
Sbjct: 356 WLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390


>gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
 gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
          Length = 470

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 159/477 (33%), Gaps = 42/477 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L  L       ++    + P   R   I  V+ DSR  + G +FV + G   DGHL++ +
Sbjct: 6   LPALSLDQLASIVGARLVAPSGER-PPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGE 64

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNT----PILVVDNTRKFLSLFASRLYGKHP-ENI 117
           A  +GA A +V      +  SA ++        +LVV +T + L                
Sbjct: 65  AFQRGASAALVQETVFSEAGSALLKHVVQTRGALLVVTDTLEALQTLGEWYLSSLRVPIR 124

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG+SGK+S    ++ +        +              + L       +      +
Sbjct: 125 IGVTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGI 184

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   V                +K      T +G  H++   T++     K ++F   
Sbjct: 185 DHVGEMDVLARI------------VKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSS- 231

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +       +D     V+                  F   +            + +  
Sbjct: 232 -FDDRSVGFIPEDEEFFHVLVEGWRGTFLPYGPATVEGFEGWESRGLEG------VILSW 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           K         GE  V NAL    L   +G+  ++V E L+    + GR E       G  
Sbjct: 285 KGLRIPLQGYGEHMVRNALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGELK--EIGGVW 342

Query: 358 IYVD-YAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411
             VD Y     S+   L+ +R +    R IVV G     GD    +   +G       AD
Sbjct: 343 FLVDCYNANPESMRASLEGVRGLKGIRRRIVVLGSMRELGDAAPSEHRRLGDYLAGYPAD 402

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + ++       E+ E   A ++ G  G        EA    + ++ + D++++  KG
Sbjct: 403 VVLLV-----GEEMEAAFA-VLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLL--KG 451


>gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
 gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
          Length = 458

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 163/470 (34%), Gaps = 39/470 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +L  +   E      ++P +      + +++D+R I  G +F+A+ G   DGH ++  A 
Sbjct: 2   ELSLQALAERFGGEIVYPGEAYNITFSSINTDTRAINHGDVFIALKGPNFDGHNYLDVAT 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA A +V +             + P   V ++ K L         K    ++ VTG+ 
Sbjct: 62  RKGAAAAIVETP--------NTNLDLPQWCVGDSYKALGELGLASREKFNGKVIGVTGSC 113

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  IC  +G +    G          +N +  P  +     +   +      
Sbjct: 114 GKTTVKGMLAAICSLAGSTVATRGNL--------NNHIGVPLSL-----MRLANEHQFAV 160

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +    S     ++  + I+       N+   H++   + +A    K  L+  L+      
Sbjct: 161 IEAGTSGPNEIKYLAELIQPHVAIVNNIMPVHVEGFGSVEAIAIDKAHLYRGLVEGGVGV 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS--VEGKDFDF 302
           +  A       +         R              +        +   S  +EG++ + 
Sbjct: 221 LNVASAQQPTLLDALQGKKITRFNPELTDEAAEVRVQNIEQDTFGRAEFSAIIEGEEVEL 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G   V NAL AA    A+GI   L+   LEK     GR +    N +   I   Y
Sbjct: 281 KLGVLGAHNVANALAAASAARAVGISVELIKRGLEKYTGDKGRMQLARVNEKLTVIDDTY 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RPIMGKIALDL-ADIAIVTDD 418
             +  S++  +         R  +V G  G+  + +      +G+ A          T +
Sbjct: 341 NASPGSVKAAIDYAAQFE--RSAIVLGDMGELGEMRNSAHEEIGRYAQQKQIKQLWCTGE 398

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             R               P      ++ + ++ A+ ML   +V+V+  KG
Sbjct: 399 ASRF--------TAQGYGPHAKWFEDKEQ-LKQALPMLCSSEVVVLV-KG 438


>gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
 gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
          Length = 494

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 85/468 (18%), Positives = 157/468 (33%), Gaps = 52/468 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V                 
Sbjct: 28  TGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLAAELGA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V +T   ++  A          ++A+TG++GK++  + V+ +   +  +    G  
Sbjct: 88  SVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVATAGN- 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  Q+N L  P  +     L+         V +     G      D ++   G   
Sbjct: 147 -------QNNELGVPKTL-----LAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVV 194

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   +++    AK  L   L      A + ADD Y+  V + A     RV +V
Sbjct: 195 NVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY----------------- 313
            + G     ++       Q    +V  +  +        F+++                 
Sbjct: 255 LFDGSAAAAERRAQADAAQTARPAVWAEQVELDEQGRPRFRLHAVGFADAPEEETARCAL 314

Query: 314 ---------NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                    NA  A  +  A GI  A+  + L       GR E +        +   Y  
Sbjct: 315 TLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGGFTVVNDAYNA 374

Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGCGGD---RDQGKRPIMGKIALDLA-DIAIVTDDN 419
             +S+   L     +   G+ + V G  G+           +G+ A  L  D  +     
Sbjct: 375 NPDSMRASLATFCALDVPGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCV--- 431

Query: 420 PRSEDPEKIRAEI-IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E    I       G+     +  G+  E        +   D ++V
Sbjct: 432 --GELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLV 477


>gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
 gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
          Length = 436

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 138/370 (37%), Gaps = 22/370 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR+   G +F+A+ G   DG+L+  +A+  GA  ++V       +    I  +   
Sbjct: 17  ITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVD------NPEVVIEGDDRY 70

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V ++   L   A+         I+A+TGT+GK++    +  +  +   + +  G    
Sbjct: 71  ILVHDSLHALQQMANYHRQMLKTPIIAITGTNGKTTTKELIANVLLKKYKTHYTQGNL-- 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +N +  P  I     LS  +S  +  + + A+  G  +     +    G  TN+
Sbjct: 129 ------NNHIGVPLTI-----LSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLITNV 177

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ L  K++       D           +      +   
Sbjct: 178 GKAHLEGFGSLEGVIRTKSELYDYLKEKKNGTAFINFDDSILMKQAEGISHLITYGTSES 237

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 +       + +    ++          L G++ + N L A  + +   +    +
Sbjct: 238 TSVCGKIDDSSLTLSLEWYKPTLSNNIQRINTQLIGDYNLSNILAAITIGVFFKVPIEDI 297

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E LE+      R +F  T      I   Y     S+   L N   + +   +V+ G   
Sbjct: 298 KEALEQYTPQNNRSQFKKTE-SNQLIIDAYNANPTSMLAALNNFCNLKAEHKMVILGDM- 355

Query: 393 DRDQGKRPIM 402
            R+ GK  ++
Sbjct: 356 -RELGKDSLL 364


>gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Leadbetterella
           byssophila DSM 17132]
 gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leadbetterella
           byssophila DSM 17132]
          Length = 433

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 136/394 (34%), Gaps = 34/394 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +++D+R+IQ   +F A+ G K +G+ F  QAI  GA   VV  A        +++   
Sbjct: 14  SGITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGAAYAVVDDA--------SLKGKE 65

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++  ++  + L   A     +    ++A+TG++GK++    + ++    G         
Sbjct: 66  RMIYCEDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRV---LGQKYKVHATK 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +++           P     A+  + +     +++  S            +   G  T
Sbjct: 123 GNLNNHIGVPLTLLSMPDDAQVAIIEMGANHQKEIALLCSIA----------EPTHGFIT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           NLG+ H++    ++     K  LF+ L        + A+D   + + +  +         
Sbjct: 173 NLGKAHLEGFGGEEGIRKGKGELFDFLKQSGGIVFVNANDPKVRALAEERNILPIVYYGD 232

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                      +        V          +   + G++   N   A  +     +   
Sbjct: 233 DEDA-------LLIKEESPVVVFESPVSGKTYTTFIGGKYNFDNMQTAHAIGRYFDVSED 285

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
              E +   +    R +          I   Y    +S+E  LK+   + +    VV   
Sbjct: 286 KACEAIAHYNPDNNRSQ-HVMVGTNHFIMDAYNANPSSMEASLKSFGALKTDSPKVVVLG 344

Query: 391 G----GDRDQGKRPIMGKIALDL-ADIAIVTDDN 419
                GD  + +   +GK+  +L  D  ++  +N
Sbjct: 345 DMYELGDYSEAEHAAIGKLLSELKFDDVVLFGEN 378


>gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
 gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
          Length = 473

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 156/479 (32%), Gaps = 53/479 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        + +  +   V +DSR ++ G +FVA  G + DGH +   
Sbjct: 1   MIALSLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         AT     P +VVD+    L   A  +  +    ++A+TG
Sbjct: 60  ----------GAVGAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVKRLGTTVIAMTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+  R G + +  G  +            T                  
Sbjct: 110 STGKTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTRD-------------TRH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++         G   N+G  HI     ++    A      E LP+  
Sbjct: 157 LVLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFGGKEKIAEA-KGEMVEALPESG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD   + +  R                      +     + +  +       + 
Sbjct: 216 LAVLNADDPLVRGMAPRTRARVLLFGEADDAEVRAENVTLTDTG-RPRFLLRTPTGCGEV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361
              L GE  V NAL AA +   +G+ +  +   L +       R E          +   
Sbjct: 275 TLRLYGEHHVSNALAAAAVAHELGMPAEEIALGLNEARSLSRWRMEVTERPDGVTIVNDA 334

Query: 362 YAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL--A 410
           Y  + +S+   L+ +  +        GR   V G     GD        +G++A+ L  +
Sbjct: 335 YNASPDSVRAALRALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVS 394

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  V       ++   +R  +     G      +   +   AI      L   DV++V
Sbjct: 395 KLVAV-----GGQEAAWLR--MGAYNEGSWGEESVHVSDTQAAIDLLRGELRPGDVVLV 446


>gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 441

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 132/363 (36%), Gaps = 36/363 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++  VS +SR +  G +FVA+V +  DGH +I  A+ +GA A++V   + + +       
Sbjct: 21  QVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRGAAAVLVDDQHDIPN------- 72

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V +T   L    +    +    ++A+TG++GK++       +  +   +     
Sbjct: 73  DVPAVIVPDTLVALQQLGAFRRQELNPKVVAITGSNGKTTTKDMTAAVMAKRYKTFKTPE 132

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +          LT P+   +              V +     G        +      
Sbjct: 133 NFNN-EIGVPMTLLTMPADTEVL------------VVELGMDRPGQLTALSKLVVPDVAI 179

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G  HI++ QT+     AK+ +   L P            + + ++ +         
Sbjct: 180 ITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPD-----GVLCIPFDEPLLTQ--------- 225

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 + +      +       T +   ++  F  PL G + + NAL A    I + ID
Sbjct: 226 -ADVAQQVVVFGDGVSAVQGDATTTTFTYQETRFAIPLIGGYNIMNALAAVSAGILLHID 284

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               +E L+   +   R E + T      I   Y     ++  +L  ++ I +    VV 
Sbjct: 285 LDDAVEALQTFDLTKNRTERLVTARGVNLISDVYNSNPTAVAAVLATLKAIPAPHKYVVL 344

Query: 389 GCG 391
           G  
Sbjct: 345 GDM 347


>gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
 gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
          Length = 451

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 175/475 (36%), Gaps = 45/475 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E + +           +++ V  DS++++ G +FV I+  K DGH ++
Sbjct: 1   MNLKKLEKVVNGEGLQESFHL------IEMHGVCIDSKNMKEGNLFVPIIRVK-DGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRRELNVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V   +  I   +       G  ++              P+ + +        
Sbjct: 108 TGSNGKTTVKDIIGGILSSTYRVHKTKGNFNSQ----------IGLPLTILEMKRD---T 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G  ++     +      T +G+ H++   +++    AK  + + L   
Sbjct: 155 EFLILEMGMSEKGQIRNLSRIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIIDGLNDD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                        + ++ +  N                L       ++  V   +     
Sbjct: 215 GLFLYN-----GDEPLLSQNINMLGIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNNTKI 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  PL G+  + NA+V   +     +    + E L+++++   RF+F+   +    I  
Sbjct: 270 QYDVPLHGKHNILNAIVGIAVGQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIIND 329

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            +  + +S++  ++ ++ +    + I+V G     G   +     +GK+  + +   + T
Sbjct: 330 AWNASPSSMKAAIETLQKLNAYEKKIIVIGDMLELGKEAKTYHREIGKMLNEESIQYVFT 389

Query: 417 DDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +I AE               N+ E     ++++ K+DV+++  KG
Sbjct: 390 -----YGALSEIVAEEARKNYHTEKVQSFDNKDEIAEEILKVITKKDVVLL--KG 437


>gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
 gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
          Length = 431

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 146/379 (38%), Gaps = 31/379 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I EV++D+R + AG +FVA+ G + D H F   AIA GA A++VS           +  +
Sbjct: 2   ITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSK---------RLLVD 52

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P +VV +TR  L  FA+ +  + P N++A+TG+SGK+SV      I ++ G   +  G 
Sbjct: 53  VPQIVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGN 112

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            TP                   + + A+  G   +  D  +  A   
Sbjct: 113 FNNDIGVPLTLLRLTPE-------------HDFAVIELGANHIGEIAYTTDLSRPEAALV 159

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            NL   H++   +      AK  +F  L       I      +S      AH    R   
Sbjct: 160 NNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGIAIINADSHDWSHWQTTLAHKQVWRFSP 219

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +G +    +   +         T+           PLPG   V NAL AA L I++G D 
Sbjct: 220 LGGEDIDFYATDLRIEQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGADL 279

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V   L +L  VPGR   +        +   Y     S+   ++ +  +   R++V   
Sbjct: 280 DAVRVGLSQLKAVPGRLFPLVLADGKLLLDDTYNANVGSMTAAVQVLAEMPGYRVMV--- 336

Query: 390 CGGDRDQGKRPIMGKIALD 408
                  G    +G+ A D
Sbjct: 337 ------AGDMAELGETAED 349


>gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa]
          Length = 458

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 29/393 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L       LI +         +   + VS+DSR I  G +F+A+ G + DGH ++ 
Sbjct: 6   RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLA 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+T
Sbjct: 57  EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++V   +  I +         G   ++ +   +       P+ L +         
Sbjct: 109 GSSGKTAVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G   + ++  +      TN G  H+      +    A      E L  +
Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             A++  DD        RA        S+           +           +     + 
Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NAL AA    A+G+    ++  L+ L  V GR     T S    I  
Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            Y     S+   +  +    SGR ++V G  G+
Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGE 370


>gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 377

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 138/392 (35%), Gaps = 29/392 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +   + VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA   +V           
Sbjct: 1   GGDCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGAA--- 57

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLS 143
                 P LVV +TRK L+   +          + AVTG+SGK++V   +  I +  G  
Sbjct: 58  -----LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVKEMLASILRTRGPV 112

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +             P                   + + AS  G   + +   K
Sbjct: 113 LATRGNLNNELGVPLTLLELAPE-------------YTSAVIELGASRVGEIAYTVSLAK 159

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN G  H+           A      E L     A++  +D       KRA + 
Sbjct: 160 PHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLGAGGTAVLNLEDKAFPIWRKRAGDR 218

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                ++      ++  ++          T++           L G   V NAL AA   
Sbjct: 219 NVLTFALTDSAADVYASELSRDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAAAG 278

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+G+    ++  L  +  V GR      ++    I   Y     S+   +  +    +G
Sbjct: 279 CAMGVPLEGIVTGLNNVQPVKGRAVAQIASNGTRVIDDTYNANPASINAAVDILTGF-TG 337

Query: 383 RIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
           R ++V G  G+     +QG R +    A  ++
Sbjct: 338 RTVLVLGDIGELGEWAEQGHREVGAYAAGKVS 369


>gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. RCC307]
 gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. RCC307]
          Length = 464

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 163/473 (34%), Gaps = 35/473 (7%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQDL       +  + +             +S+DSR +Q G +F+ + G + DGH F+  
Sbjct: 7   LQDLARLLDAPVQRRSAPADPTTLAWTFEHISTDSRALQPGDLFIPLRGERFDGHDFLDA 66

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A++ G    +++  ++       +      +VVD+T       A     +    ++AVTG
Sbjct: 67  AVSVGVAGALIARDWA-----GYVPEQLATVVVDDTLSAYQQIALAWRRQLHCPVVAVTG 121

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    ++      G     +G  +      +    +               +   
Sbjct: 122 SAGKTTTRELIKACLSPLGAIESSVGNENNDIGVPRTMLRS---------------NSSH 166

Query: 183 THVSVEASSHGL-DQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             + +E    GL + HRL    +      TN+G  HI    ++ A   A      + L  
Sbjct: 167 AGLVLEMGMRGLGEIHRLSVCAEPDVAVITNIGTAHIGRLGSRAAIAQA-KCEITDRLKP 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I A D   +  + R  +   + +++              +   Q  +I +  +  
Sbjct: 226 SGLLVIPAGDPLLEAEVSRVWSGRVQRVALSDDPLEPGTPAPDWVAQLQGQSIELASQGL 285

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             + PL G     N L+A      +G+ +  + +    L     R   +   +       
Sbjct: 286 KLINPLEGRHNARNFLLALAAAQELGVTAEQLRDLSVSLPGGRARRLRINGVNILDET-- 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVT 416
            Y  +  ++   L+ ++    G    V G     GD+       +G+ A  L  D  +V 
Sbjct: 344 -YNASPEAMLASLELLKQQPGGHRYAVVGTMLELGDQSLSLHRQVGEKATALGLDGLVVV 402

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              P          +   G+   +   +   A     ++L   D +++ A +G
Sbjct: 403 ASGP----EASALMQGAAGLSKLVCVASPEAAAEPLKQLLRPGDHVLLKASRG 451


>gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 466

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 142/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + AS  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGASHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     ++    AK  ++  +LP     +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDD----FTAEILDA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +S    G  ++   V  +       +           P  GE  V NA  A    
Sbjct: 245 AKAHRISTFGVGGDVYATDVELLPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +AIGI    +++ LE+     GR  F+  +     I   Y     S+    + +      
Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPY-LFIDDTYNANPTSMRAAAQVLLQQQGV 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHII 398


>gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
 gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
          Length = 478

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 158/480 (32%), Gaps = 37/480 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L+      +    +           + + +DSR ++ G +FV +VG + DGH F+
Sbjct: 1   MRLANLVELWGRPIEAAPADQAAS-----FSRIGTDSRELEPGCLFVPLVGERFDGHGFL 55

Query: 61  PQAIAQGAEAIVVSSA--YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
             A+ QGA A++       + Q  +    S   I +VD+T+            +    ++
Sbjct: 56  AAALEQGALAVLAQRDRLSAEQAEALVRSSGGRIWLVDDTQAAYQELGRLWRRQGSAPVI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    ++ +    G     +G  +               P+ L KA     
Sbjct: 116 AVTGSAGKTTTRELIRAVLSPLGPVLASVGNEN----------NDIGVPLTLLKAGGEHR 165

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 V +     G  +      +      TN+G  HI    +++A   AK  +   L 
Sbjct: 166 ---AVVVEMGMRGLGEIERLSRCAEPDITVITNIGTAHIGRLGSREAIATAKCEIVAALR 222

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVT 292
           P     I   D      +         RV                 L+            
Sbjct: 223 PDGLVVIPAGDPLLEASLAAVWSGRVIRVALQDDPTGPQPGQLLGRLRAGTDGDRLIWGR 282

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                ++     PLPG     N L+A  +   +G+D   +      L     R   +G  
Sbjct: 283 AEPGAREHSTELPLPGRHNARNLLLALAVASELGVDPLQLSRLEVALPGGRSRRIRLGEI 342

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPIMGKIALDLA 410
                    Y  +  ++   L  + +    R   +      G++       +G+ A  L 
Sbjct: 343 EVLDET---YNASPEAMLAALDLLASQGGRRFAALGTMLELGEQSTELHRRVGERARALG 399

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            D  ++       E           G+P      +  +A +T +  L   D L++ A +G
Sbjct: 400 LDGLVIVAGGAEGEALLAGA----AGLPRLQRVDSPEDAAQTLLGWLEPGDHLLLKASRG 455


>gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
 gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
          Length = 504

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/381 (16%), Positives = 125/381 (32%), Gaps = 24/381 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   AG IF+A+ G   DG+ F   A+ +G    VV  A   +        +   
Sbjct: 82  VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAKAG------DARF 135

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    +  +              + 
Sbjct: 136 ILVDDALVTYKELARAHRRRFGIPVIGITGTNGKTTSKELISAVLSEKFNVHATEANYNN 195

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                +  + + AS  G  +  +  ++   G  TN+
Sbjct: 196 DVGVPRTLLGIRPE-------------HDIAVIEMGASHPGDIEKLVRYVEPTCGLITNV 242

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L        +   +A   E+ ++             
Sbjct: 243 GRAHLQGFGSFEGVKRTKGELYDFLKAHGGLLFLNESNADLTEMAEQREFDRIVTYGQDS 302

Query: 273 QGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                     CA   K       T       ++    L G + + N L A  + +  G+ 
Sbjct: 303 TADVQGQVVSCAPFLKFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLHFGVT 362

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           +  V   LE       R +     +    I   Y    +S+   ++N R +     + + 
Sbjct: 363 AQQVNHALENYIPRNNRSQLT-ETAHNRLIVDAYNANPSSMSAAIENFRLMQVENKMAIL 421

Query: 389 GCGGDRDQGKRPIMGKIALDL 409
           G   +  +       ++  +L
Sbjct: 422 GDMRELGEASGEEHQRVVGEL 442


>gi|300173742|ref|YP_003772908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888121|emb|CBL92089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 441

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 79/440 (17%), Positives = 157/440 (35%), Gaps = 42/440 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V+ +S+ +  G +FVA+V +  DGH +I  A+  GA A++V + +        I + 
Sbjct: 22  ITGVAFNSQQVTTGDLFVALVMDN-DGHNYIQNALDNGAAAVLVDNKH-------VINTK 73

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++VD+T   L         +    I+A+TG++GK++    +  I   +  +      
Sbjct: 74  IPAIIVDDTLIALQQLGKYQRNQINPTIIAITGSNGKTTTKDMLFSIMATTYRTFKTPEN 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +          L  P    +              + ++         RL  ++      
Sbjct: 134 FNN-EIGVPMTLLMMPENTEVLVVE----------LGMDRPGQLTVLSRL--VRPDVAMI 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  HI++ +T+     AK+ +   L              + + ++  A      +L 
Sbjct: 181 TMIGEAHIEFFKTRANIARAKLEIVSGLKSD-----GVLFIPFDEPLLTEAIVQRQVILF 235

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                             +             F  PL G + + NAL A    I + ID 
Sbjct: 236 GQGVNNIEAFSDHTMFVYQNT----------QFAIPLIGGYNIMNALAAISAGILLHIDL 285

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             V + L+   +   R E + T      I   Y     ++  +L  ++ I +    VV G
Sbjct: 286 KKVAKALQTFDLTKNRTERLVTARGVVLISDVYNSNPTAVAAVLATLKAIPAPHKYVVLG 345

Query: 390 CG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
                GD+       +G K+     D   +      +++   I    I  +       ++
Sbjct: 346 DMLELGDQANKLHANLGQKVLDSGVDGVYLVGP-LLNKNMAPIIQAHIDSVDFHQYATDQ 404

Query: 446 IEAIRTAIEML-NKQDVLVV 464
           ++ +R  ++ L  K DV+++
Sbjct: 405 LDQLRLDLQTLGEKGDVILL 424


>gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 456

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 143/416 (34%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +     VS+DSR I+ G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVVPLDSRLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   +          + A
Sbjct: 56  DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + +   K      TN G  H+           A      E L 
Sbjct: 155 YTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      ++  ++          T++    
Sbjct: 214 AGGTAVLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELSRDARGCPAFTLNSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 TARVQLNLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNNVQPVKGRAVAQIASNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    +GR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388


>gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 461

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 129/388 (33%), Gaps = 22/388 (5%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +     EL        +      +  +S D+R +  G +F+A+ G+  DGH  I  A+ +
Sbjct: 3   LLWTREELETATGGTFLGNTSVSVTGISIDTRTLTHGDLFIALKGDNSDGHAHITTALEK 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA AI+  SA    D          IL+V +T   L   A     +    ++AVTG+ GK
Sbjct: 63  GAAAILAHSAEGFTDP--------RILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    ++     SGL+       +               P+ LA+              
Sbjct: 115 TTTKEMLRLCLAPSGLTHAAEASYNNHWGV----------PLTLARLPRE---ASFCISE 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  +  G        ++      T +G  H+ +  +  A    K  +   L       + 
Sbjct: 162 IGMNHPGEILPLAKMVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGIAIVP 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                      +                   HL  +    +     +S++GK F+   P 
Sbjct: 222 DDAHGTEFFTAEAEKAQAVLWTCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPA 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
           PG     NA+ A   C A+G D A     L       GR            +  + Y  +
Sbjct: 282 PGTHLARNAVAALAACAALGADVAKAANALADFRPGKGRGALTQIVGGAITLLDESYNAS 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + S+   L  +R I + R I V G   +
Sbjct: 342 AASIRAALDVLRHIPATRRIAVLGDMRE 369


>gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
 gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
          Length = 457

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 158/485 (32%), Gaps = 62/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            +++  +N++  DSR I AG +F+ + G + DGH 
Sbjct: 1   MKL------TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A               + ++   ++VD+T +     A+    K   +++
Sbjct: 54  FIQTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G          +N +  P         +   
Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +E     +    L        +                    A+ ++  +  
Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   ++   D      +                G    L        K  +T S +  
Sbjct: 210 MPDGSLLLVPCDPIVDPFLPSNLEVV-------RFGDGAELTVSELTEYKDHLTFSTKFL 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    +    +
Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 322

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411
              Y     +++++L+    I     G+ I V       G++       M       A D
Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
             I        ED  ++        P             ++ +A ++   E L + D ++
Sbjct: 383 TVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQIL 437

Query: 464 VAGKG 468
           +  KG
Sbjct: 438 L--KG 440


>gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
 gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
          Length = 433

 Score =  114 bits (284), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 132/381 (34%), Gaps = 29/381 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R+I  G +F A+ G K D + F  +A+  GA   ++ +           ++N   
Sbjct: 17  VCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGAAYSIIDNEA--------YQTNERC 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V +    L   A     +    ++ +TG++GK++    +  +  R   +    G  + 
Sbjct: 69  LLVSDVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRKYKTFATRGNLNN 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
                       P                +  + + A+ H  +   L GI +   G  TN
Sbjct: 129 HIGVPLSILSLGPEI-------------EMAVIEMGAN-HQKEIEFLCGIAQPTHGLITN 174

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+D     +     K  LF  L      A I  ++ Y  E+ ++A     +V+  G
Sbjct: 175 IGMAHLDGFGGFEGVKKGKAELFAYLKQHSGFAFINRNNPYLLEMSEKAQL--SKVVYYG 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +       K+       +++   +  +F     L G +   N L A  +     +    
Sbjct: 233 TESSNTVAGKLLKTDPFIELSWQSKAGEFYIALNLTGAYNFENILAAVCIGQFFEVSPVE 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L        R +   T S        Y    +S+   L NI  +      V+ G  
Sbjct: 293 INAGLSGYFPNNNRSQLTKTASNTVICDF-YNANPSSMAAALTNIELLKGSNKTVIIGDM 351

Query: 392 ---GDRDQGKRPIMGKIALDL 409
              G+    +   + + A  L
Sbjct: 352 FELGEESAKQHLNIIEQAEKL 372


>gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
 gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
          Length = 461

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 130/388 (33%), Gaps = 22/388 (5%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +     EL        +      +  +S D+R +  G +F+A+ G+  DGH  I  A+ +
Sbjct: 3   LLWTREELETATGGTFLGNAPVSVTGISIDTRSLAPGDLFIALKGDNSDGHAHIATALEK 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++  SA  L D          IL+V +T   L   A     +    ++AVTG+ GK
Sbjct: 63  GAAAVLAHSAEGLTDP--------RILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    ++     SGL+       +               P+ LA+     +        
Sbjct: 115 TTTKEMLRLCLAPSGLTHAAEASYNNHWGV----------PLTLARLPREAA---FCISE 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  +  G        ++      T +G  H+ +  +  A    K  +   L       + 
Sbjct: 162 IGMNHPGEILPLAKMVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITALPAGGIAIMP 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                                          HL  +    +     +S+ GK F+   P 
Sbjct: 222 DDAHGTPFFTAAAVKAQAVLWPCGVNPQSTAHLSHLQTGADGSHFDVSILGKTFNVHLPA 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
           PG     NA+VA   C A+G D A     L       GR            +  + Y  +
Sbjct: 282 PGTHLARNAVVALAACAALGADVAKAAAALAAFRPGKGRGALTKIAGGAITLLDESYNAS 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + S+   L  +R I + R I V G   +
Sbjct: 342 AASIRAALDVVRHIPATRRIAVLGDMRE 369


>gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 466

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 141/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G +F+A+ G + D H F+ Q  A G +  +V     +    
Sbjct: 31  QIPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPLDV---- 86

Query: 84  ATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +   LVV +TR  L    A R        ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----DIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + AS  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQFAVMELGASHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     ++    AK  ++  +LP     +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDD----FTAEIHKA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +S    G  I+   +  +      T+           P  GE  V NA  A    
Sbjct: 245 AQAHRISTFGVGGDIYATDIELLPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+GI    +++ LE+     GR  F+  +     I   Y    NS+    + +      
Sbjct: 305 LALGIGLEDIVQGLEQAQGAKGRLNFIQKSPY-LFIDDTYNANPNSMRAAAQVLLQQQGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G     L  D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGHDLAQLPLDHII 398


>gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Francisella
           cf. novicida Fx1]
          Length = 453

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQDL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +       N   V I V  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRVTSNSFAVKIRVFDQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     N +   +   Y  ++ +++  ++++      +I
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLNDKLTLVDDTYNASAGAVQAAIEDLAEFDGKKI 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
 gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
          Length = 494

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 84/468 (17%), Positives = 157/468 (33%), Gaps = 52/468 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V                 
Sbjct: 28  TGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLAAELGA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V +T   ++  A          ++A+TG++GK++  + V+ +   +  +    G  
Sbjct: 88  SVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVATAGN- 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  Q+N L  P  +     L+         V +     G      D ++   G   
Sbjct: 147 -------QNNELGVPKTL-----LAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVV 194

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   +++    AK  L   L      A + ADD Y+  V + A     RV +V
Sbjct: 195 NVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHARLDARRVETV 254

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY----------------- 313
            + G     ++       +    +V  +  +        F+++                 
Sbjct: 255 LFDGSAAAAERRAQADAAEAARPAVWAEQVELDEQGRPRFRLHAVGFADAPEEETARCAL 314

Query: 314 ---------NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                    NA  A  +  A GI  A+  + L       GR E +        +   Y  
Sbjct: 315 TLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGGFTVVNDAYNA 374

Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGCGGD---RDQGKRPIMGKIALDLA-DIAIVTDDN 419
             +S+   L     +   G+ + V G  G+           +G+ A  L  D  +     
Sbjct: 375 NPDSMRASLATFCALDVPGKHVAVLGDMGELGSYAPACHAGIGEFAATLPLDRLVCV--- 431

Query: 420 PRSEDPEKIRAEI-IHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E    I       G+     +  G+  E        +   D ++V
Sbjct: 432 --GELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLV 477


>gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 455

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 139/426 (32%), Gaps = 44/426 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  +N++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA AI                   P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFENGAVAIFSEKDL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G             L  P               
Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQDHM 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E +   +    L G   +    +                  A+ ++       
Sbjct: 165 GDIHLLSEIARPRIAVLTLVGEAHLEYFGS--------------RDKIAQGKMQIVDGMD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  +I   D+     +                G    L        K  +T +      
Sbjct: 211 SNGILIAPGDSIIDSYLPENQMVI-------RFGDHQELNVTDIREEKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++E LE + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +       +  ++   L+    D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383

Query: 414 IVTDDN 419
           +   D+
Sbjct: 384 VFYGDD 389


>gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis G/11222]
 gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-EC]
 gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-LC]
          Length = 450

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 162/446 (36%), Gaps = 39/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +K+  V+ DSR +  G +F A+ GN+  GHLF+ QA   GA A VV+S Y    +     
Sbjct: 23  KKVTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHGPSY----- 77

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
               +L V + R+ L              ++ +TG+ GK++  +F  Q+           
Sbjct: 78  -GLQLLRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKV---- 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  + +A             + +  S     ++ L+ I+   G
Sbjct: 133 ----FMSPKSYNSQLTLPLSVLMADGDEDFLL-----LEMGVSEPNNMKNLLEIIEPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++   H  +   + A    + +               +   + +   K+   A    
Sbjct: 184 VITHIDVQHAVHFLDKGAQGIVEEKSLLLERCGLQLIPKDSS--WFQFFAKKNSAADRFS 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S+  +    + + +    + + V IS    D +     P      N ++A  L     +
Sbjct: 242 FSMSNETADFYYRAI----HSEGVLISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNV 297

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIR-TITSGRII 385
               + +  + L +   RFE       G R+  D Y  + +++   L  +      G+II
Sbjct: 298 PMDRLEQVSQSLFLPAMRFEQQ--EHNGIRVINDAYNASPDAMLAALDAVPVPPEGGKII 355

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            + G     G           + A+  A I     +  +      I  +    I  +   
Sbjct: 356 FILGHMAELGRYSDECHIAAARKAVTKAHIIFFVGE--KWFPVRDIVRDADCQIGFYSAV 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++A++  ++     DV+++  KG
Sbjct: 414 SEIMDAVKALVQQ---GDVVLL--KG 434


>gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
 gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
          Length = 441

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 67/445 (15%), Positives = 145/445 (32%), Gaps = 41/445 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF+A+ G   +G+ F   A+  G    +V  +   +        N  I
Sbjct: 16  VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAE------PDNERI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TS 151
           ++V +        A          ++ +TGT+GK++    +  +          +G   +
Sbjct: 70  ILVSDALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNYNN 129

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +        +TT   I                + + AS     +  +  ++   G  TN
Sbjct: 130 DVGVPRTLLEMTTKDEI--------------AVIEMGASHPTDIKKLVTYVEPTCGLITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H++   + +     K  L++ L    +   +   +    E+    +          
Sbjct: 176 VGRAHLEGFGSFEGVKKTKGELYDYLKAHNALLFLNESNPDLVEMATERNFDRIITYGQD 235

Query: 272 YQGK-------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                           K          T  V    ++    L G + + N L A  + + 
Sbjct: 236 DTADVKGEVISCCPFLKFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTIGLH 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G++   +   LE       R + + T      +   Y    +S++  ++N R +     
Sbjct: 296 FGVEPHKICHALESYTPTNNRSQLIKTKDNNLIVDA-YNANPSSMKAAIENFRLMEVKNK 354

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           + + G   +          +I   +        D  + E+   +          F +  N
Sbjct: 355 MAILGDMHELGDATAEEHQRIVDQI--------DASKIENVWLVGENFAKTNCHFRKFAN 406

Query: 445 RIEAIRTAIEMLNK-QDVLVVAGKG 468
             E ++ AI +    +  +++  KG
Sbjct: 407 VEE-VKAAIALKKPTEHYILI--KG 428


>gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 503

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++ A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV NT   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVER--------LLPALSVPQVVVKNTELALARIAASMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   +  +  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLCSLLGVAQTKGAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   +   G      I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPVQGRRIVRYGLQIGADITARQLQLQAGATQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR +   T   G 
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
 gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
          Length = 477

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 154/457 (33%), Gaps = 46/457 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS D+R I  G +FVA+   + DGH F+ QA+ QGA A +V          A + ++ P
Sbjct: 26  GVSIDTRTIAQGDLFVALKDVR-DGHEFVAQALDQGAAAALV------THRPADVPADAP 78

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L+V +    L         +    I A+TG+ GK+S    ++ + ++ G         +
Sbjct: 79  LLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKTSTKEMLRAVLEKQGKCHAAEASYN 138

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ LA+  +         + +  S+ G         +      T 
Sbjct: 139 NHWGV----------PLTLARMPAD---ADYAVIEIGMSNPGEITPLSQMTQPHVAMLTT 185

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+            K  + +  L     A++  D   S  +   A   G R +  G
Sbjct: 186 VAAAHLASFDNLAGIAVEKASIMDG-LEPGGVAVLNGDIETSGILQDHAAKLGARQVLFG 244

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                  +K V    +   ++ S  G+++ F   +PG     NA+    +  A+G D   
Sbjct: 245 ETAPDWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHFAMNAVGVLAVAEALGADPVA 304

Query: 332 VLEHLEKLHVVPGRFEF-----VGTNSRGGRIYVDYAHTSNSLEMI-----------LKN 375
               +       GR           N       +D A  +N   ++             N
Sbjct: 305 AALDIGAWVPPAGRGTREVIVTDMANDGESLELLDDAFNANPTSLVAALEVLAAATPTDN 364

Query: 376 IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           +  I  GR + + G     GD +Q     M   +   +   +           + +  E 
Sbjct: 365 VGRIVKGRRVAILGDMLELGDAEQEMHREMAGNSHLQSLDLVHCAGPLMLHLWQALPEE- 423

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
                         E +  A  +++  DV++V G KG
Sbjct: 424 ----QRGHWAETAAELVLQAPRLVDAGDVVLVKGSKG 456


>gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
 gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
          Length = 427

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 162/440 (36%), Gaps = 41/440 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +D+R I  G +F A+ G   +G+ F  QA+  GA  +V+      Q    T     
Sbjct: 14  TGICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGET----- 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++ DN+ + L   AS         ILA+TG++GK++    +  +  +   ++   G  
Sbjct: 69  --ILTDNSLECLQKLASFHRQYLNIPILALTGSNGKTTTKELIHAVLSKKFNTTATKGNL 126

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L           +  V + A+     +      +   G  T
Sbjct: 127 NNH----------IGVPLTLLSMTKE---TEIGIVEMGANHLKEIETLCHIAQPNYGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++   + +     K  L++ ++  +    + A+DA   E+ K+      +  + 
Sbjct: 174 NFGKAHLEGFGSLEGVIKGKTELYKHIVKSDGLLFVNANDAKQLELTKKE-----KRYTF 228

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +G    +K + A        + +  +       L G +  +N   A  +     + + 
Sbjct: 229 GNEGNDCEIKLLEA-----TKELIISYQGQSINSNLIGLYNYHNIAAAIAIGQYFKVSAT 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
            V E +E+      R + +  N  G  I +D Y    +S+   L N +       I++ G
Sbjct: 284 KVKEAIEEYIPTNNRSQIIKQN--GHTIILDAYNANPSSMTAALDNFKQTVGNNKILILG 341

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
              +  +        IA  ++   I        E+  KI+ +        +      EA+
Sbjct: 342 DMFELGETASKEHQAIADKISSQNIGNTVYLVGENFSKIKTD-----NKHMHLCPTFEAL 396

Query: 450 RTAIEMLNKQD-VLVVAGKG 468
           ++ ++     +  +++  KG
Sbjct: 397 QSNLKHQKPNNATILI--KG 414


>gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
 gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
          Length = 425

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 131/386 (33%), Gaps = 32/386 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I    IF A+ G+  +G+ +  +A+ +GA   VV       +           
Sbjct: 16  VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEYAINNK--------F 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L         +    ++ +TG++GK++    ++ + Q+   +   +G  + 
Sbjct: 68  ILVDDVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                    LT      +A      +           +                G  TN 
Sbjct: 128 H-IGVPLTLLTIQKDTEIAIVEMGANHLKEIAFLSSLAE------------PDYGYITNF 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ L   +    + ADD   +  +      G  V  +G+
Sbjct: 175 GKAHLEGFGSTEGVIQGKSELYKYLTTNQKHVFLNADDPIQESKL------GTYVKKIGF 228

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                +  K+  +     VTI  + KD      L G +   N   A  +     I   L+
Sbjct: 229 SSNNSNYFKIELLSADPFVTI--KVKDITITTKLVGAYNFTNCCAAIIMGKYFNIALPLI 286

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
            E +E       R + +     G +I +D Y     S+   L N   I +   IV  G  
Sbjct: 287 KEAIEGYTPANNRSQIL--EQNGYKIILDAYNANPTSMAAALDNFNGIKAAHKIVFLGDM 344

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTD 417
            +           IA     +   T 
Sbjct: 345 FELGTTAETEHQHIADKACKMNFTTT 370


>gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
 gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
          Length = 452

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 133/377 (35%), Gaps = 42/377 (11%)

Query: 1   MK-----LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKED 55
           MK     L+ ++      L++           ++I  ++ DSR ++ G +F+  +G   D
Sbjct: 1   MKYFVKDLEKILNAKKINLVD----------NKEITGIAIDSRKVKEGDLFIPFLGENVD 50

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH +I  A  +GA A +               S+  I+ V+++ + +   A         
Sbjct: 51  GHDYIESAFEKGAVASLS--------LKDDFVSDNNIIYVNDSYEAIQGLAKHYLEYLNV 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TG++GK++    V  I +         G          +N L  P  I     L+
Sbjct: 103 KIVAITGSNGKTTTKDIVTSILETKFKVHKTQGN--------FNNELGVPLTI-----LA 149

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 +  + + A + G        +K      TN+G  HI++  ++     AK  +  
Sbjct: 150 APEDSDILVLEMGADNFGQLDFLSKLVKPDYTIITNIGESHIEFFGSRAGIAKAKFEITN 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +                + ++K          +   +  +  +        + ++   +
Sbjct: 210 GMKKDGFFVYN-----GDEPLLKELVENSSINATSCGENSYNDIILENYTITRDKIDFKL 264

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSR 354
                +F   L G+  ++N + A  +   IG+ +  +   ++ +  +   R E +     
Sbjct: 265 SIDKNNFSTTLKGKHNLFNIMFAVAIAKKIGLTNEEIRHAIDNISKITNMRLESITYGED 324

Query: 355 GGRIYVDYAHTSNSLEM 371
              I   Y  +  S++ 
Sbjct: 325 SLIINDAYNASPTSMKA 341


>gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 454

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 165/480 (34%), Gaps = 53/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL   +Y+     + +      ++ +  + ++  DSR I+ G +F+ + G + DGH FI
Sbjct: 1   MKLS--LYEVAK--VVEAQNIISEFDDVPLKQIEFDSRRIEKGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA A                 S  P ++V +  K     A     K   +++AV
Sbjct: 56  EKAFENGAVATFSEKEI----------SGHPYILVKDCLKAFQELAKYYIEKMRLDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    ++ +   +  +    G             L  P               
Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKIVLEMGQDHM 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E             ++      T +G  H+++  +++    A+ ++       
Sbjct: 165 GDIHLLSEI------------VQPHIAVVTLIGEAHLEFFGSREKI--AQGKMQITDGMN 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G+   +       +K  +  +    + 
Sbjct: 211 SHGILIAPGDPIIDPYLPENQMVI-------RFGENQEIFVNSIEESKNSLRFTTNVLEQ 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G++   NA++AA +   + +    +LE LE + +   R E+   ++    +  
Sbjct: 264 ALTLPLSGKYNAINAMLAAYVGKLLAVAEEDILEALEHIQLTGNRTEWKKASNGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIA 413
            Y     ++ +IL+    I     G+ I +     +       +  ++   L     D  
Sbjct: 324 VYNANPTAMRLILETFAQIVPNQGGQKIALLADMKELGPSSVDLHCQLIQALNPDDIDHL 383

Query: 414 IVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
           I    +   E   ++ +++            E  ++ E +     E+L   D +++  KG
Sbjct: 384 IFYGQDI--EPLAQLASQMYPIGKVFFFKKTEAEDQFEDLYHHVQEILGSNDQILI--KG 439


>gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 456

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 143/416 (34%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L+      L+           +     VS+DSR I+ G +FVA+ G + DGH ++
Sbjct: 5   MTFRELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   +          + A
Sbjct: 56  DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + +   K      TN G  H+           A      E L 
Sbjct: 155 YTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      ++  ++           ++    
Sbjct: 214 AGGTAVLNLEDKAFPIWRKRAGNRNILTFALTDSAADVYASELSRDARGCPAFNLNSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 TARVQLNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQIASNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    +GR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388


>gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
 gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
          Length = 457

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 156/485 (32%), Gaps = 62/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + +  IN++  DSR I AG +F+ + G + DGH 
Sbjct: 1   MKL------TLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A               + ++   ++VD+  +     A+    K   +++
Sbjct: 54  FIQTAFDNGALATFTEKE---------LPADQVHILVDDALEAFQKLAAYYLEKTEVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G          +N +  P         +   
Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +E     +    L        +                    A+ ++  +  
Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSTLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   ++   D      +                G    L        K  +T S    
Sbjct: 210 MPDGSLLLVPSDPIVNPFLPSNLEVV-------RFGDGAELTVSDLTEFKDHLTFSTNFL 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    +    +
Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 322

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411
              Y     ++++IL+    I     G+ I V       G++       M       A D
Sbjct: 323 SDVYNANPTAMKLILETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
           + I        ED  ++        P             ++ +A ++   E L + D ++
Sbjct: 383 MVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTADEDQFDAMVKQIKESLGEHDQIL 437

Query: 464 VAGKG 468
           +  KG
Sbjct: 438 L--KG 440


>gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
 gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
          Length = 457

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 158/485 (32%), Gaps = 62/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            +++  +N++  DSR I AG +F+ + G + DGH 
Sbjct: 1   MKL------TLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A               + ++   ++VD+T +     A+    K   +++
Sbjct: 54  FIQTAFDNGAIATFTEKE---------LPADQAHILVDDTLEAFQELAAYYLEKTGVDVI 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G          +N +  P         +   
Sbjct: 105 AVTGSNGKTTTKDMIHDILATTYRTYKTQGN--------YNNEIGLP-------YTALHM 149

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +E     +    L        +                    A+ ++  +  
Sbjct: 150 PDDTEKIVLEMGQDHMGDIHLLSNLAKPKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDG 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   ++   D      +                G    L        K  +T S +  
Sbjct: 210 MPDGSLLLVPCDPIVDLFLPSNLEVV-------RFGDGAELTVSELTEYKDHLTFSTKFL 262

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA+VAA +   +G+    +L  L  L +   R E+    +    +
Sbjct: 263 DGQVTLPVTGKYNATNAMVAAYVAKHLGVTEENILSALANLQLTKNRTEWKKAANGADIL 322

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-D 411
              Y     +++++L+    I     G+ I V       G++       M       A D
Sbjct: 323 SDVYNANPTAMKLVLETFSAIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAID 382

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
             I        ED  ++        P             ++ +A ++   E L + D ++
Sbjct: 383 TVIF-----YGEDIAELSQLASQMFPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQIL 437

Query: 464 VAGKG 468
           +  KG
Sbjct: 438 L--KG 440


>gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 456

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 88/416 (21%), Positives = 145/416 (34%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +   + VS+DSR IQ G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V              ++ P LVV +TRK L+   +        + + A
Sbjct: 56  EQVAAKGAVGALVEREVQ--------GASLPQLVVLDTRKALAQLGAMNRNAFIDKPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G     +   K      TN G  H+           A      E L 
Sbjct: 155 HSAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEA-KGEILEGLN 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      +H   +          TI+    
Sbjct: 214 ASGTAVLNLEDKAFPVWRKRAGNRNILTFALADPAADLHASDLSNDARGCPGFTINSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 VAQVQLNLLGALNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    +GR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGEWAEQGHRDVGAYAAGKVS 388


>gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
 gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
          Length = 465

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 156/400 (39%), Gaps = 27/400 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I +++   +Q  +  IN+V +DSR      +F+A+ G   DGH F+ +A  QGA+A++V 
Sbjct: 9   IAEVAKGTLQGSDIIINKVITDSRVDCRDALFIALKGENFDGHQFVEKAKLQGAKALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                      + SN P ++V +T K L L A  +  +    ++ +TG++GK++V   V 
Sbjct: 69  H---------LVESNLPQVIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I ++ G      G  +               P+ L        +     + + A+  G 
Sbjct: 120 SILRQKGNLLATQGNFNNH----------IGVPLTLL---RLKETDQYAVIEMGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDA 251
             +     K       N+   HI+   + +    AK  +++ L  + +  I       D 
Sbjct: 167 IAYCASLAKPDVSVINNVEAAHIEGFGSVEGVAKAKSEIYQALSEEGTAVINLDSNFADQ 226

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + ++          R     +       +    +    Q T     +      P+PG   
Sbjct: 227 WIEQFAGLQKITVSRHKDANFVADNCQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NALVAA L  A G D  ++   LE +  V GR       +    I   Y  +  S++ 
Sbjct: 287 VSNALVAAALASAAGADMEIIKVGLETMVSVKGRLNQFKAANGALIIDDTYNASVASVKA 346

Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDL 409
            +  + +++  +++V+      GD  +     +G+ A + 
Sbjct: 347 AIDYLTSLSGTKVLVLGDMAELGDESEQYHREVGEYAKEN 386


>gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
 gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
          Length = 459

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 163/470 (34%), Gaps = 37/470 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL ++      +          QW++ ++  VS DSRH+  G +FV + G + DGH ++
Sbjct: 3   MKLAEIAKAINAQ------NDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   GA A + +S + + D +       P+LVV++    L         K    ++AV
Sbjct: 56  PSAFTNGAVASLWASDHEITDQTH------PLLVVNDPLAALQQLGKYYLHKINPIVVAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I       +      +               P+ L    S   + 
Sbjct: 110 TGSNGKTTTKDMIASILSTQFNVTKTYANFN----------NEIGVPVTLLNMESNTEAV 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V                L  +     +   +  +        +             L +
Sbjct: 160 VVEMGM----DRFDQLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKE 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   +   D+     + +R  +   R +  G Q              +Q      E  D 
Sbjct: 216 DGTLVFNGDEP---LLEERVKDLTQRQMRFGRQLSNNLYATSVHDEPRQLSFTVNEWPDE 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +F  P+ GE+ + NAL A  +   + I  A + + L  + +   R E+V   +    +  
Sbjct: 273 EFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEWVKGKNGEQILSD 332

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y     + + +LK I      GR I V G   +       +   +A ++ D   +    
Sbjct: 333 VYNSNPTAAKEVLKTIAETPVDGRRIAVLGDMLELGDAAPKLHASLAEEI-DHQKIASVY 391

Query: 420 PRSEDPEKIRAE-IIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E  + ++ + I  G P          +  + I      L  +D++++
Sbjct: 392 LVGEQMKNLKDKLIQEGYPAEDIHHYAASDLQQLIADLTATLTGEDIVLL 441


>gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 515

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 73/498 (14%), Positives = 142/498 (28%), Gaps = 58/498 (11%)

Query: 5   DLIYKDFPELINQ-LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L       L +  LS          + ++ +DSR +Q G ++VA  G   DGH FI  A
Sbjct: 3   ELTAPRIAALTSGRLSRTVADELRINVAQICTDSREVQPGSVYVAKPGEHSDGHTFIEAA 62

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILA 119
           I  GA  I+     +            P ++V +  + +   A+ +      N    +L 
Sbjct: 63  IEAGAILIIAEREIADAQGQPF-----PAIIVADAVQAMGDIAAEVVQLIRANGEVTVLG 117

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    +  I ++ G +   IG  +               P+ + +      +
Sbjct: 118 ITGSAGKTTTKDLLAGILRQLGPTVAPIGSYNGE----------VGVPLTVFQ---ADLT 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + A+  G     L G+                                 E L 
Sbjct: 165 TRFLVIEMGATRIG-HIEYLAGLVKPDIGVVLGIGSAHAGEFGGVENIAQAKGELVEALS 223

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-----HNKQQVTIS 294
               A++   D     +  R           G +        +        +      + 
Sbjct: 224 PTGTAVLNLGDGRVSAMASRTVAPVLWFGEEGLRIPEGQTSVLAGNVQVGSNATPSFDLR 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH--LEKLHVVPGRFEFVGTN 352
                   +          N L+AA             +      +      R E     
Sbjct: 284 FPDGSSWPIRSGLIGIHHVNNLLAAAAAAWAAGADGETIARGLDGQGPKSRWRMERSERA 343

Query: 353 SRGGRIYVDYAHTSNSLEMILK------------NIRTITSGRIIVVFGCG---GDRDQG 397
                I   Y    +S+   L+            N + +   R   V G     G     
Sbjct: 344 DGVTVINDAYNANPDSMRAALRVLAELGRGGADENGKILPQRRTWAVLGPMFQLGAESIR 403

Query: 398 KRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAI 453
           +   +G++ + L  + + ++      +E        I  G      +   +   A     
Sbjct: 404 EHNALGQVVVRLNISRLLVI-----GAEARALHIGAINEGSWGEESVHVPDLDSAYALLQ 458

Query: 454 EMLNKQDVLVVAGK-GHE 470
           E L   D+++   K GH+
Sbjct: 459 EELKPGDIVLF--KSGHD 474


>gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington]
 gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl ligase [Rickettsia typhi]
 gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington]
          Length = 448

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 132/361 (36%), Gaps = 22/361 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V  +S+ ++ G +F+A+ GN+ DGH +I  AI +GA A++VS    + D         
Sbjct: 23  NAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++V+++   L   A           +A+TG+ GK+S    ++ + Q   +     G  
Sbjct: 76  -IILVNDSFNALQKMALYKRKNSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G     +  +K      +
Sbjct: 135 NNYLGL-------------LINLASMADDTEYAIFELGMNHKGEISELVQILKPNIAMIS 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    AK  +F+     +   I  +++ Y+K +    + +   + S 
Sbjct: 182 NISEAHLEFFNSIEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLSITNIYSF 241

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G       L     +  +  +   +  K  D   P   +    N      +   +G D  
Sbjct: 242 GRSKASAELIFYKTLGEQVHLKYYINNKFIDITIPFIPKHFANNYTGVLLIIDILGKDIE 301

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +   +L  + +  GR E +        I   Y  +  S++  L+ ++ + +     + G 
Sbjct: 302 IAANYLADISITKGRGEII-NIQNSRVICDYYNASPQSMKAALEYLKQVPADNKTSIIGE 360

Query: 391 G 391
            
Sbjct: 361 M 361


>gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 477

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 136/393 (34%), Gaps = 24/393 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +   + DSR ++ G +F A+ G + DGH F+ QA+A GA   V++   + +       
Sbjct: 23  VTVEGGTVDSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGAVIARPLA-EVLPDGAP 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             T ++ V +TR+ L+  A  +  +     ++ +TG+ GK++       +  R       
Sbjct: 82  PGTAVVEVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKEMAAAVLARRFAVLKS 141

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLI 205
            G  +T              P+ L         +      +E +  GL +  RL  I   
Sbjct: 142 AGNYNTD----------VGLPLTL-----LDLEERHQVAVLEMAMRGLGEIARLAAIAEP 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                 +  +                    E LP++  AI+ A D   + +  R      
Sbjct: 187 DVGVVTVVAESHLEFLGSLERVAQAKGELVEALPEDGVAILNAGDPRVRAMAARTRARVL 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324
                G       +          +  + V G D       +PG   V  AL AA + +A
Sbjct: 247 TFGHDGEGADVRAVNVEHRGAAGSRFRLEVPGGDAATVELAVPGPAAVTCALAAAAVGVA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383
           +G+D+A +   L +      R E          I   Y  +  S    L  +R +  S R
Sbjct: 307 LGLDAATIAAGLAEARPAALRNEIRQAGPWTLYIDC-YNASPTSTRAALHALRQVAGSRR 365

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
            + + G     GD         G+ A   AD+ 
Sbjct: 366 AVAILGDMFELGDWAVEGHRETGREAARTADVL 398


>gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
 gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
          Length = 477

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 157/470 (33%), Gaps = 42/470 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA 
Sbjct: 6   TSSDLLGAMNGRPVGNLPEGITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIALANGAA 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VVS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++ 
Sbjct: 66  LLVVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ +    G     +   +               P+ LA       +       +  
Sbjct: 122 KEMLRHMLSPLGRVHASVASFNNHWGV----------PLTLA---RMPETTDYGVFEIGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G  +     ++      T++   H+    +      AK  +FE ++      I    
Sbjct: 169 NHAGEIRPLTRMVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVI--NR 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPL 306
           D+   E++++A           +        ++       + ++      G+  +     
Sbjct: 227 DSAQYELLEKAAATAGVSHVHFFGANPKSEFRLAEFAGGAEGSVLWAGVGGRTLEIAIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YA 363
           PG     NAL A       G D+  V   L  +    GR          G    +D  Y 
Sbjct: 287 PGRHIAENALAAIAAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYN 346

Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADI----AIVT 416
               S+   +  +R       GR I + G   +  +    +   +A  + D       +T
Sbjct: 347 ANPASMRAAITLLRDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLT 406

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVV 464
                  +   +R  +   +         +       A+  +   DV++V
Sbjct: 407 -----GTEMAHLRDALPSEVSVVHRDLVSDLT---AYALGAVAAGDVVMV 448


>gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 460

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 177/467 (37%), Gaps = 42/467 (8%)

Query: 13  ELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
           E I   S   +   +  +    V++DSR IQ G +FVA+VG K D H F+PQ    GA A
Sbjct: 7   ETIASYSGGRLVHGDPAVTCTSVNTDSRKIQPGELFVALVGEKFDAHDFVPQVAQAGAAA 66

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS                 ++ V +T   L   A          ++ +TG++GK+S  
Sbjct: 67  VIVSR-----LPENVEALGCGVIEVPDTLLALQQLARAYRELLNPLVIGITGSNGKTSTK 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V  + ++       +G  +                I L   +  +       V     
Sbjct: 122 DLVAAVLRKKYQVCATLGNFNNH--------------IGLPLTILRMEEGDNCAVLEMGM 167

Query: 191 SHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +H  +   L GI +  A   TN+G  HI+Y  +++     K  L    +P     ++ A+
Sbjct: 168 NHHGEIAVLAGIARPDAAIITNIGVAHIEYMGSREGIAQEKGTLAAA-VPHGGVVVLNAN 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
           D +S  +  R+H    RV+  G     +      +       +++ +G+       P+PG
Sbjct: 227 DDFSSSIAARSH---ARVVLAGVGEGDVVATLTESGARGSFFSLNFDGRVVVAVHLPVPG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  V NA +AA +    G+    +   L ++ +  GR +          +   Y    +S
Sbjct: 284 EHMVGNAALAAAVGWHFGVVPQDIAAALGEVQLTKGRVQVKFWRGV-TVLDDSYNANPDS 342

Query: 369 LEMILKNIRTIT-SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           +   LK +  +   GR + V G  G+     +   R + G  A    D           E
Sbjct: 343 MRAGLKTLAALQIPGRRVAVLGRMGELGPHAESSHREVGGYAAELGVDAVF-----SVGE 397

Query: 424 DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           +   I ++    G  G     +   A+   + E L++ D +++  KG
Sbjct: 398 EAALITSQAEKSGGSGDYRNFSSHAAVAACLTEWLHEGDAVLL--KG 442


>gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
 gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
          Length = 466

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 141/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH + G  F+A+ G + D H F+ Q  A G +  +V     ++   
Sbjct: 31  QIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPLDVE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    A R        ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + AS  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGASHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     ++    AK  ++  +LP     +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDD----FTAEILDA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +S    G  ++   +  +      T+           P  GE  V NA  A    
Sbjct: 245 AKAHRISTFGVGGDVYATDIELLPQSTNFTLHTPQGISAVKLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +AIGI    +++ LE+     GR  F+  +     I   Y     S+    + +      
Sbjct: 305 LAIGIGLEDIVQGLEQAQGAKGRLNFIQKSPY-LFIDDTYNANPTSMRAAAQVLLQQQGL 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHII 398


>gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
 gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
          Length = 465

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 92/445 (20%), Positives = 155/445 (34%), Gaps = 38/445 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +FVAI G++ DGH F  QA+  GA A++ S              + P 
Sbjct: 31  VVIDSRAVEPGSLFVAIRGDRVDGHDFAAQAVEAGAVAVLASRPV-----------DAPA 79

Query: 93  LVVDNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +VV +T   L+  A+ +        ++ VTG++GK+S    + ++  R G +        
Sbjct: 80  VVVGDTVTALADLATAVCADLPSTTVIGVTGSAGKTSTKDLLARLTARIGPT-------- 131

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                + +N +  P  +     L          + + A   G   H         G   N
Sbjct: 132 IAPVESFNNEIGHPLTV-----LKAGEDTRYLVLELSARDAGHISHLARIAPPRIGVVLN 186

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+     + A   AK  L E  LP +  A++ ADD     + +R            
Sbjct: 187 VGTAHLGVFGGKDAIAKAKGELVEA-LPADGVAVLNADDPLVAAMARRTDARVAWYGRAE 245

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                     +     +   T+         +  L GE  V NAL AA     +G+  A 
Sbjct: 246 SAAVRAEGVTLDDRG-RAAFTLRTPSGAAPVVLRLYGEHAVENALAAAAAAYELGLPVAT 304

Query: 332 VLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IV 386
           + E L +       R E          I   Y    +S+      +  +  GR     I 
Sbjct: 305 IAEELSEAEPRSRWRMEVTDRADGVTVINDAYNANPDSMRAAFGALDALAGGRRRFAVIA 364

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                G+        +G++A   A +  +    P +          + G+P      +  
Sbjct: 365 ALRELGEESAALNEGVGRMAA-GAGLEGLFVVGPDAGPVLAGAGAAVDGVPSATRVTHVA 423

Query: 447 EAIRTAIEMLN---KQDVLVVAGKG 468
           +A   A  +       DV++V  KG
Sbjct: 424 DAQEAAAALSALLVPGDVVLV--KG 446


>gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
 gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
          Length = 458

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 140/393 (35%), Gaps = 29/393 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L       LI +         +   + VS+DSR I  G +F+A+ G + DGH ++ 
Sbjct: 6   RLSQLTVALDARLIGE---------DAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLA 56

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +  A+GA A +V    +         +  P L+V +TR  L    +    K    + A+T
Sbjct: 57  EVAAKGAVAALVEREVA--------DAPLPQLLVRDTRAALGRLGALNRRKFTGPLAAMT 108

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+SGK++V   +  I +         G   ++ +   +       P+ L +         
Sbjct: 109 GSSGKTTVKEMLASILRTQ------AGDAESVLATRGNLNNDLGVPLTLLQ---LAPQHR 159

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + AS  G   + ++  +      TN G  H+      +    A      E L  +
Sbjct: 160 SAVIELGASRIGEIAYTVELTRPHVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLAAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDF 300
             A++  DD        RA        S+           +           +     + 
Sbjct: 219 GTAVLNLDDKAFDTWKARASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEA 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NAL AA    A+G+    ++  L+ L  V GR     T S    I  
Sbjct: 279 QVQLNLLGRHNVANALAAAAAAHALGVPLGGIVAGLQALQPVKGRAVAQLTASGLRVIDD 338

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            Y     S+   +  +    SGR ++V G  G+
Sbjct: 339 SYNANPASMLAAIDILSGF-SGRTVLVLGDMGE 370


>gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
 gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
          Length = 463

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 141/404 (34%), Gaps = 27/404 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++ +  P  +       ++  +     VS+D+R + AG +F+A+ G + D H F+ QA A
Sbjct: 14  MLSQKLPNALKP----QLKGGDAMFTRVSTDTRTLDAGDLFIALRGERFDAHDFLAQAEA 69

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +   A+VV                 P LVV ++   L   A+         ++A+TG+SG
Sbjct: 70  RQPCAMVVEKFNPAI--------QLPQLVVADSTLALGQVAALNRSLFTGPLVAITGSSG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V + V  I    G +    G  +               P+ L +            +
Sbjct: 122 KTTVKTLVASILGECGETLATRGNLNNH----------IGVPLTLLE---LEERHQFAVI 168

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS      +     K       N+   HI+   +     NAK  ++   L     A+
Sbjct: 169 EMGASGPSEIAYACSLAKPQVAMINNVMPAHIEGFGSIAGVANAKSEIYGG-LVTGGIAV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DDA++ + +++        +S+         + +          + +  +    +  
Sbjct: 228 VNIDDAFAPQWIQQLAGKKTLTVSLANPDANCRAEAIEYASEHLAFDLLIHRQRLRIILN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL+AA    A+G     +   L +   V GR            I   Y   
Sbjct: 288 AQGEHSVRNALMAAACAYALGASMEQIQRGLARFAPVAGRMSRQRGIHNALIIDDSYNAN 347

Query: 366 SNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALD 408
             S+   +  +       +++      G+    +   +G  A  
Sbjct: 348 PGSVRAAIDVLAQAEDSILVLGDLAELGETATEQHAALGDYAKQ 391


>gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
          Length = 449

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 146/427 (34%), Gaps = 33/427 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNITMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A          K   A+I AD     +++    N     +  
Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             +      + +   +  +QV +      K  D   P        N      +   +G D
Sbjct: 241 FGRSAKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +   HL  +    GR E +   +        Y  +  S++  L+ ++ + +     + 
Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359

Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440
           G     G+  +     + + I         +   N +  D   P KI  +    +   I 
Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELIT 419

Query: 441 EKGNRIE 447
              +  E
Sbjct: 420 HITDLFE 426


>gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 460

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 138/382 (36%), Gaps = 25/382 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V++DSR  +   +F+A+ G + DG+ F   A+A+G    VV  A          +   
Sbjct: 35  SGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGCAYAVVDRA-------ELAQKEA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L V+++   L+  A     +    I+ +TGT+GK++    +  + + +      +G  
Sbjct: 88  RCLYVEDSFVALTELARMHRRQLGFPIIGITGTNGKTTTKELISAVLRSTYTIGATVGNL 147

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +            TP                   V + AS  G         +   G  T
Sbjct: 148 NNQIGVPLTLLSFTPE-------------MQYGVVEMGASHIGDIAELTAIAEPDFGLIT 194

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H++   + +    AK  L++ L      A + ADD     +M+ +          
Sbjct: 195 NIGRAHLEGFGSFEGVTKAKCELYDWLGQHNGEAWVNADDP---LLMQHSAPLVRTTYGT 251

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
             +  F        +          + + +     L G++ + NAL A  + + +G+   
Sbjct: 252 SREAFFRASLLDHPLGYFLAFAFYWQRETYRVHTQLVGKYNLPNALAAVAVGLRLGVAPP 311

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR-IIVVF 388
            ++  LE       R +++        + VD Y    +S+   ++N  + +  +   ++ 
Sbjct: 312 DIVMALEHYSPSNSRSQYIANTPHHNNLVVDAYNANPSSMYTAIENFLSTSGAQAKYLIL 371

Query: 389 GCGGDRDQGKRPIMGKIALDLA 410
           G   +     R     +   LA
Sbjct: 372 GDMFELGSASREEHLALVQRLA 393


>gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 460

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 132/396 (33%), Gaps = 30/396 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+EVS+D+R+I A  +FVA+ G + D H F   A   GA A++VS    ++    
Sbjct: 19  GSDTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTAKDNGAVALLVSRHLPVE---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI----LAVTGTSGKSSVASFVQQICQRS 140
                 P ++V +TR  L L  + L  +  +      LA+TG+ GK++V      I    
Sbjct: 75  -----LPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGSCGKTTVKEMCAAILATK 129

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G  +            TP                   + + A+  G   +  +
Sbjct: 130 GKVLATAGNFNNDIGAPLTLLRLTPE-------------YQYAVIELGANHLGEISYTTN 176

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +K       NL   H++   + +    AK  +FE L    +  I  A +   +      
Sbjct: 177 LVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLAKGATAVINLASND-RELWAPLL 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +      S   Q  F                +              G   V NAL AA 
Sbjct: 236 ADKNVITFSSEEQADFFASDIELDSDGYPHFELHSPQGSVAIHLSQLGLHNVSNALAAAA 295

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L   +G   A + + LE    V GR            I   Y  +  S++  +  + +  
Sbjct: 296 LTSVLGATLAEIKQGLETATNVKGRVAVSQPMVGLRVIDDTYNASVASVKAAIDLLASYQ 355

Query: 381 SGRIIVV--FGCGGDRDQGKRPIMGKIAL-DLADIA 413
             R  ++      G+  +     +G  A     D  
Sbjct: 356 GQRWFILGDMAELGEESENLHREVGLYAQTKGLDKV 391


>gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
 gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
          Length = 256

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 96/252 (38%), Gaps = 25/252 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  K+     +        + E++I  V+ DSR    G++FV + G + DGH FI
Sbjct: 1   MK--NMTLKNITAACHGTFHGDSSFLEKEITGVAIDSRKAAPGFLFVPLKGARVDGHTFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + QGA A +     S            P + V++  K L   A+    +    ++ +
Sbjct: 59  PQVMEQGALATLTEEDPS--------SLTCPCIHVESCEKALRDIAAFYRMQLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +  R        G  +               P+ +          
Sbjct: 111 TGSVGKTSTKETIASVLSRKYNVLKTEGNFN----------NGIGLPLTIFNLTEE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +     G + H L  I +      TN+G  H++   ++     AK  +F+ L P
Sbjct: 158 EVAVLEMGIDHFG-EMHELASISQPDICVITNIGLAHMENLGSRDGILKAKTEVFDHLRP 216

Query: 240 KESPAIIYADDA 251
             S  +   DD 
Sbjct: 217 NASVILNGDDDK 228


>gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
 gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 157/458 (34%), Gaps = 45/458 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S D+R I+ G +FVA+   + DGH F+  A+ +GA   +VS                
Sbjct: 25  TGLSIDTRSIRPGEMFVALKDVR-DGHDFVADALKKGAACALVSR------IPEGCSEED 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++AVTG+ GK+S    ++ +    G         
Sbjct: 78  PLLLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKTSTKEMLRAVLSAQGRVHAAEASF 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               PI LA+  +         + V  +  G     +   +  A   T
Sbjct: 138 NNHWGV----------PITLARMPAE---ADFAVIEVGMNHPGEISPLVKMARPHAAMIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++  +T       K  +F+ L P  +  +    ++    +      AG  V   
Sbjct: 185 TVAAAHLEAFETLDDIAREKAAIFDGLEPGGTAVVPTGLESTPILLAAAKARAGQVVTFG 244

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G    L       +   V     GK   F    PG+    NAL    L  A+G D A
Sbjct: 245 PAPGSDYRLVSAKIAGDATIVQAEQAGKPMLFKVMTPGKHFANNALGVLALARAVGADPA 304

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +    +       GR    GT  R     +D A + +  +         +    + V   
Sbjct: 305 VAALDIGLWAPPAGR----GTRERIWLDLIDEAQSFDLFDDAFNA-NPASMEAGLEVLAG 359

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEI-------IHGIPG 438
              RD   R   G+    L D+  +     R     +E P  +  +I       +  +  
Sbjct: 360 QVPRDGVGRVKRGRRVAILGDMLELGAGEARLHAAIAELPAMVSIDIVHLAGPRMRALHE 419

Query: 439 FIEKGNRIEAIRTAIEML-------NKQDVLVVAG-KG 468
            + +  R E + TA ++        +  DV++V G KG
Sbjct: 420 ALPREKRGEWVETARDLAARAPHLVDAGDVVLVKGSKG 457


>gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 259

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +S+D+R ++AG +F+A+ G + DGH F+ QA+AQGA  +++S           I S 
Sbjct: 26  FTGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQGAAGVLISR------RDIVIPSG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             +++ D+TRK L   A     +    ++AVTG++GK++     
Sbjct: 80  IAVVLTDDTRKALQNLACFHRLRFDIPVIAVTGSNGKTTTKDMT 123


>gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
 gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia
           rickettsii]
 gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 449

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 145/426 (34%), Gaps = 31/426 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHQGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLS 269
           N+   H+++  + +    AK  +F      +   I    + Y+K + + +  +       
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHSF 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L     +  +  +   +  K  D   P        N      +   +G D 
Sbjct: 242 GRSAKTSAELMLYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKDI 301

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            +   HL  +    GR E +   +        Y  +  S++  L+ ++ + +     + G
Sbjct: 302 EIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAIIG 360

Query: 390 CG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI-E 441
                G+  +     + + I         +   N +  D   P KI  +    +   I  
Sbjct: 361 DMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELITH 420

Query: 442 KGNRIE 447
             +  E
Sbjct: 421 ITDLFE 426


>gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium longum subsp. longum F8]
          Length = 480

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 82/494 (16%), Positives = 153/494 (30%), Gaps = 56/494 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++++       LI                   SDSR    G +FVAI G + DGH F+
Sbjct: 1   MSVEEIAKAVDGRLIGDAGSESRA------TNTVSDSRQAGPGSVFVAIRGERVDGHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
            +   QGA   +V                 P +VV +T   L   A     +        
Sbjct: 55  AKTAGQGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDF 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+ +TG+ GK++    +  +    G +   +G  +                I L     
Sbjct: 107 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 152

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +       V+   +SH  +  RL  I     +               +           
Sbjct: 153 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293
           + L     A++ ADD +   +   A+           Q   +    V A    + +   +
Sbjct: 213 QGLLPGGTAVLNADDEHVVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352
             +G        +PG   V NAL AA + +  G+    V      +  + P R      N
Sbjct: 273 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 332

Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401
             G         +    +S++  L  ++   S        + + G     G  +      
Sbjct: 333 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTS 392

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456
           +G  A +L   AI+   + + +  + +   +  G             +   A +  I++ 
Sbjct: 393 IGTYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLA 452

Query: 457 N--KQDVLVVAGKG 468
                 V+++  KG
Sbjct: 453 RNHPDAVVLL--KG 464


>gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 483

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 82/494 (16%), Positives = 153/494 (30%), Gaps = 56/494 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++++       LI                   SDSR    G +FVAI G + DGH F+
Sbjct: 4   MSVEEIAKAVDGRLIGDAGSESRA------TNTVSDSRQAGPGSVFVAIRGERVDGHDFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
            +   QGA   +V                 P +VV +T   L   A     +        
Sbjct: 58  AKTAGQGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDF 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+ +TG+ GK++    +  +    G +   +G  +                I L     
Sbjct: 110 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +       V+   +SH  +  RL  I     +               +           
Sbjct: 156 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293
           + L     A++ ADD +   +   A+           Q   +    V A    + +   +
Sbjct: 216 QGLLPGGTAVLNADDEHVVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352
             +G        +PG   V NAL AA + +  G+    V      +  + P R      N
Sbjct: 276 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 335

Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401
             G         +    +S++  L  ++   S        + + G     G  +      
Sbjct: 336 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTS 395

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456
           +G  A +L   AI+   + + +  + +   +  G             +   A +  I++ 
Sbjct: 396 IGTYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLA 455

Query: 457 N--KQDVLVVAGKG 468
                 V+++  KG
Sbjct: 456 RNHPDAVVLL--KG 467


>gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
 gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
          Length = 450

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 138/419 (32%), Gaps = 35/419 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L    F ++++   I          N   +DSR +  G IF A+ G K DG+ F+
Sbjct: 1   MYL-NLTLGSFAKIVDGRIIQGNPL--MPFNAFITDSRKLTKGDIFWALKGEKFDGNTFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A+V    ++          NT ++ V+NT   L   A+    +    ++A+
Sbjct: 58  QNAVDAGASALVADKFFA----DKIDLKNTALVEVENTLTALQTLAAYHRRRSDLKVVAI 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+    +  IC+ SG +   +G  +  + F     L                  
Sbjct: 114 TGSNGKSTTKQMLLSICKTSGPARANMGNLN--NQFGLPFSLLEIDSKD----------- 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + AS  G                TN+   H+ + +  +  +  K  L + L   
Sbjct: 161 KFGVFELGASKKGDILEIGKPTLPDVAIITNVSAAHLQFFKDLKTVYETKTELIDCLNFG 220

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D    + +K  +                   K       +    S + +  
Sbjct: 221 GILVF--NSDDAMLKKLKTEYKGKAISFGFKSGADLQIKNKKNLEFVYKGEVFSFDLQ-- 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                   +    NA  AA   IA+G+    + + L     +P R E     +    +  
Sbjct: 277 ------FEKHNKLNAAAAAAGAIALGLYKDNIEKGLAAYEAMPMRMEERKIGNVDFILDC 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIV 415
            Y     S++  +  +    +G  + V G     G+        + KI      D   +
Sbjct: 331 -YNANPASMKNAITLLAKRKAGPRVAVLGDMKELGNCSAKYHAHLAKILIGKQIDYIFL 388


>gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           6-diaminopimelate--D-alanyl ligase [Rickettsia
           montanensis]
          Length = 449

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 144/427 (33%), Gaps = 33/427 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDAIDKGAAAVIISKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           + +TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIVITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A          K   A+I AD     +++    N     +  
Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             +      + +   +  +QV +      K  D   P        N      +   +G D
Sbjct: 241 FGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +   HL  +    GR E +   +        Y  +  S++  L+ ++ + +     + 
Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359

Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPG-FI 440
           G     G+  +     + + I         +   N +  D   P KI  +    +     
Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPSKIAKKYFKNVDELMT 419

Query: 441 EKGNRIE 447
              +  E
Sbjct: 420 HITDLFE 426


>gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 456

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 136/395 (34%), Gaps = 34/395 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L       L+           +   + VS+DSR I  G +FVA+ G + DGH ++
Sbjct: 5   MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   A    G     + A
Sbjct: 56  DQVAAKGAVGALVEHEVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + ++  K      TN G  H+      +    A      E + 
Sbjct: 155 YTSAVIELGASRVGEIAYTVNLTKPHVVIITNAGTAHVGEFGGPERIVEA-KGEILEGVE 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA +      ++       H  ++          T++    
Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFHAGELSRDARGCPSFTMASPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 SAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
              Y     S+   +  +    +GR ++V G  G+
Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367


>gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
          Length = 468

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 161/447 (36%), Gaps = 38/447 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
            ++DSR ++ G  FVAI GN EDGH +I  A+ QGA  I+       Q  S     +  +
Sbjct: 30  FTADSREVRPGAAFVAIRGNAEDGHDYIKDALHQGASLIIAEKGRIPQGLSIR---DRAV 86

Query: 93  LVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           + V+++   L+  AS       P+ ++A+TG+ GK++    +++  +             
Sbjct: 87  IEVNDSVVDLARMASAYLSACLPDEVIAITGSVGKTTTREVLKKCFE------------G 134

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
               F  +    T     L   L+  +   V  + +  +  G  +  +          T 
Sbjct: 135 MPLVFGAEKSFNTLIGCSL-TILAMPAGTNVLILEMGTNKPGEIEEMVQYFPPTRCIITE 193

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H++   T +    AK    E         +I+  D  +           C+ + VG
Sbjct: 194 VSSAHLEGLVTLEGVIAAK---MEITRSPHLKTLIFNADNENLANAAGQVYGTCKKIGVG 250

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA-----LVAAGLCIAIG 326
            +   + + +      +    +    +  D +                 + A  L   +G
Sbjct: 251 VRKGEVRICQSTFDLVENLPRLKTTIRWEDGVISDLYCGLWGTHNSLSLVYALTLYRELG 310

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRII 385
                 L +LE +  +PGR     T +    I   Y    +S++  L    T+   GR +
Sbjct: 311 YPLEEALRNLETMTSLPGRGRVFSTRAGAVIIDDSYNANPSSMKASLNTFSTVEVKGRKL 370

Query: 386 VVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            + G   +  + +  +  +I  +    D   +       E+ +    ++       I   
Sbjct: 371 AILGSMKELGKEESVLHEEILRSTHFLDALFLV-----GEEWKVPLEKMPEHERSKIVIV 425

Query: 444 NRIE--AIRTAIEMLNKQDVLVVAGKG 468
           ++++  A+  A +M+   D +++  KG
Sbjct: 426 SKVQSFAVELA-KMIRSGDGVLI--KG 449


>gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 345

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 121/364 (33%), Gaps = 22/364 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            Q RE  I  V +DSR I+ G +FV +VG + DGH +    +  GA A +          
Sbjct: 1   EQHRELPIQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRDRGEAPA 60

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            A       ++VVD+T   L   A     +    ++ +TG++GK++    V  +   +  
Sbjct: 61  GA-------VIVVDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLSTTYK 113

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +               P+ + +  +      +  + +  S     +      
Sbjct: 114 VHKTGGNFNNH----------IGLPLTILEMPAD---TEIAVLEMGMSGRHEIERLSQIA 160

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII--YADDAYSKEVMKRA 260
           +      TN+G  H+    ++     AK+ +   + P                    +  
Sbjct: 161 RPDVAVITNIGEAHLLQLGSRHEIARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETV 220

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G    + G              H+K  +  S+   +     PL G+  V N L A  
Sbjct: 221 KPEGLGTFTFGLDHSNDDYPTGMMFHSKGIIFTSLLHPEEGLDLPLLGQHNVINCLAALA 280

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +    GI    +   L  LH+   R E +   S    +   Y  +  S++  +  + ++ 
Sbjct: 281 VARHFGITEENIRTGLTGLHLTGMRIEQIVAPSGLTILNDAYNASPTSMKAAIDALHSLK 340

Query: 381 SGRI 384
               
Sbjct: 341 GYHH 344


>gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 456

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 134/395 (33%), Gaps = 34/395 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L       L+           +   + VS+DSR I  G +FVA+ G + DGH ++
Sbjct: 5   MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   A    G     + A
Sbjct: 56  DQVAAKGAVGALVEREVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + +   K      TN G  H+           A      E + 
Sbjct: 155 YTAAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPDRIVEA-KGEILEGVE 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA +      ++       +  ++          T+     
Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFYASELSRDARGCPSFTMDSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +      L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 NVQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
              Y     S+   +  +    +GR ++V G  G+
Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367


>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
 gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
          Length = 445

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 131/401 (32%), Gaps = 38/401 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
               L   L    +      +   S DSR I+ G +F+ + G K D H FIP A  +GA 
Sbjct: 4   TSQTLAKILKGSLVGSPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGAV 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++             +     ++ V +T + L   A          ++ V G++GK++ 
Sbjct: 64  GVISEREVD-------VPPGKFLIKVRSTLESLREIAKFKRENFKGKVIGVAGSAGKTTT 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +    G      G  ++           +                    +   A
Sbjct: 117 KELLSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLE-------------TDFWVLEHGA 163

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G  ++ ++  K      T LG +H++   + +        +F  +       I    
Sbjct: 164 SKRGEIKNLIEITKPHVRLITTLGEEHLEGFGSLEGVIWGNAEMFCRISDNFYAVIPGKF 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 + K+              G+   L+      +++ V+  VEG+ F    P  G 
Sbjct: 224 LDTLFFLPKKI-----------SFGERGELQAQNVEVSEKGVSFEVEGEKFFISVPSLGL 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNS 368
            +  N L    +   +G       E L++   V GR +    N +   +  D Y     S
Sbjct: 273 VE--NILACFCVLKVLGFTLKEFKEALKEFSPVEGRMKV--FNLKNFILIDDTYNANPVS 328

Query: 369 LEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407
           L   +K++      ++ ++      G+  +     +G++  
Sbjct: 329 LRNAIKSVGAFKRDKVFILGDMLELGEHSKELHEEVGRLLN 369


>gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
          Length = 427

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 93/482 (19%), Positives = 183/482 (37%), Gaps = 60/482 (12%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L+ K FP L            + KI  V  DSR I  G +F AI     +G+ ++ 
Sbjct: 3   RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQ 47

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+ +GA  ++               ++  ++ V+NT   +   A          ++A+T
Sbjct: 48  EALDKGASLVIADR---------YSGNHEKVIKVENTILVMQELAEEYRRCLKTKMIAIT 98

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    +  I  ++  +   +G          +N +  P  I   +     +   
Sbjct: 99  GSNGKTTTKDIIYAILSKTFQTKKTLGN--------YNNHIGLPFTILNLEEKDEFA--- 147

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G         +   G  TN+G  H+++ +T++  F AK  L   L    
Sbjct: 148 --VLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELLPYL---- 201

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                          +    +   + +   + G           + K+    S +  D  
Sbjct: 202 ----------PEGCFISSGDDVFLKKIPAIHVGYDERNDYRIFGYQKKDRRSSFQLNDKQ 251

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  PL G+  V NA +   +   IG+DS  + ++L ++ + P RFE              
Sbjct: 252 YEIPLEGKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIELSPMRFERSEYQGTKYINDA- 310

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  +  S+ + L ++   T+   I V G     G+++      + + A+  +  AI+   
Sbjct: 311 YNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCSLQAIL-LY 369

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            PR     K   +    IP  +    + E I+  ++   ++ VL+ A +G +   I+   
Sbjct: 370 GPR----MKKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRGMKLEEIIERE 425

Query: 479 EK 480
           EK
Sbjct: 426 EK 427


>gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 480

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 82/494 (16%), Positives = 153/494 (30%), Gaps = 56/494 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++++       LI                   SDSR    G +FVAI G + DGH F+
Sbjct: 1   MSVEEIAKAVDGRLIGDAGSESRA------TNTVSDSRQAGPGSVFVAIRGERVDGHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
            +   QGA   +V                 P +VV +T   L   A     +        
Sbjct: 55  AKTAGQGATVAIVDHEVK--------SDGLPQIVVKDTVDALGELARYNIVRRRELDGDF 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+ +TG+ GK++    +  +    G +   +G  +                I L     
Sbjct: 107 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 152

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +       V+   +SH  +  RL  I     +               +           
Sbjct: 153 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 212

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293
           + L     A++ ADD +   +   A+           Q   +    V A    + +   +
Sbjct: 213 QGLLTGGTAVLNADDEHVVPMAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352
             +G        +PG   V NAL AA + +  G+    V      +  + P R      N
Sbjct: 273 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 332

Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401
             G         +    +S++  L  ++   S        + + G     G  +      
Sbjct: 333 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTS 392

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456
           +G  A +L   AI+   + + +  + +   +  G             +   A +  I++ 
Sbjct: 393 IGTYADELGIDAIIAVGSAQDQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLA 452

Query: 457 N--KQDVLVVAGKG 468
                 V+++  KG
Sbjct: 453 RNHPDAVVLL--KG 464


>gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
 gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
          Length = 455

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 144/422 (34%), Gaps = 44/422 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERK----INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
                 E+   L + P    E +       V++D+R +QAG +FVA+VG   DGH F  Q
Sbjct: 4   FSASLGEIAKVLGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEFAKQ 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA A +V      +  +       P + V +T             +    ++A+TG
Sbjct: 64  AVEKGAIATIVKKGVFSKTVT------LPRIEVTDTLAAYQTLGQWWRSQCAIPVVAITG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++    V     + G                 +N +  P  +          +   
Sbjct: 118 SVGKTTTKELVAAALSQFGTVFKTRAN--------YNNEIGVPKTL-------LGLTTEH 162

Query: 183 THVSVEASSHGLDQHRL--DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  VE    GL++  L     K      TN+G  HI    ++ A   A        LP 
Sbjct: 163 DYAVVEMGMRGLEEIALLTQIAKPTVALITNVGTAHIGRLGSRAAIAQA-KCELLRELPT 221

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++  DDA       R  +       +        +     I +  ++ +       
Sbjct: 222 DGTAVLNHDDARLMSTAARFWSGTQITYGLEGGDVRGQIAGSDIIVDGVKIPL------- 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG     N L A     A+ ++   +      + +  GR +     +    +  
Sbjct: 275 ----PLPGRHNALNLLSAIATLKALNLNWQQLS-QGFSVPMPAGRSQRHQLPNDILLLDE 329

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVT 416
            Y   + +    L+ +      R I V G     G +      ++GK   DLA D  ++ 
Sbjct: 330 TYNAGAEATIAALELLADQPGTRHIAVLGTMKELGTQSVDLHRLVGKTVADLALDQLLIL 389

Query: 417 DD 418
            D
Sbjct: 390 AD 391


>gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 503

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++ A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV +T   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   +  +  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   +   G      I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR +   T   G 
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
 gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
          Length = 447

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 133/384 (34%), Gaps = 25/384 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +R +  +S+D+R ++AG I+VA+ G   DGH ++  AI +GA A+VV  A        
Sbjct: 20  GDDRVVTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTAIHKGAGAVVVQDALP------ 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P LV+ +TRK L + A  L  +    ++A+TG+ GK+S  + + +I +      
Sbjct: 74  --DCPVPQLVLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKTSTRAMLTEIFKLQPGLL 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +      +                          + + A++           + 
Sbjct: 132 ATEGNFNNDIGVPK-------------TWFRLTDQHQRVLLELGANAQQEIAWLGSFSRP 178

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N    H +     +     K  + +    +    +   DD      +K+A +  
Sbjct: 179 HISLLLNAAEAHTEGFGGLEGVRQGKGEIIDATHSEGGVVL-NKDDPAYNRWLKQAGDRK 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                         L       +  + T+ +   D    +P+ G+    NA  AA     
Sbjct: 238 IVTFGRHSDADVC-LLSFKNNSHGSEYTLGMPDGDLSVSWPVLGKHMAINAAAAAATAWL 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+ +  + + L  +   PGR E V +   G  I+  Y     S    +  +  +    +
Sbjct: 297 AGVSALDIAQGLSAMQPEPGRMEPVDSMHGGALIHDAYNANPASFRAAIDVLEDLGEDTL 356

Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406
           ++       GD        +G  A
Sbjct: 357 LIAGDMAELGDESANLHREVGLYA 380


>gi|158834070|gb|ABW81840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 121/252 (48%), Gaps = 3/252 (1%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            TT S I + + LS + +  VT  ++E SSH L QHR+  +   A  F+NL RDH+DYH 
Sbjct: 8   NTTASAIEVQQILSNMLTHKVTFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHG 67

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               Y  AK  LF +   K     +       +  E+      +    +  G QG ++  
Sbjct: 68  DMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWMSA 127

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K+    N   +         +   PL G F V N L+     +A+      +L+   KL
Sbjct: 128 QKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKL 187

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKR
Sbjct: 188 QPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKR 246

Query: 400 PIMGKIALDLAD 411
           P+MGKIA  LAD
Sbjct: 247 PLMGKIAETLAD 258


>gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 452

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 147/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGTLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +    A  N     I +  +++D+  P  G+  + N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLLNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++      +I
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 503

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++ A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV +T   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   +  +  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   +   G      I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLQAQPAQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR +   T   G 
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 476

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 161/479 (33%), Gaps = 35/479 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN--EVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK    + ++  E + +L          ++    V  DSR +  G +FVA+ G + DGH 
Sbjct: 1   MKAT--LQRNDLEAVGELVFHGEAPPSFELAEPHVVIDSREVSEGGLFVALHGERTDGHR 58

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++      GA   +V+ ++   +       +   LVV++T   L   A R        I+
Sbjct: 59  YVNDVFQHGATWAMVNRSWYEAEGHPLPPHHKGFLVVEDTVAGLQHLAVRYRNTFSIPIV 118

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+ G++GK++    V          +     +S +S    +       P+ L +      
Sbjct: 119 AIGGSNGKTTTKEMVA---------AVLASDSSAVSMSQGNRNNHLGVPLTLLQMRHSTE 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V       +   +    +          TN+G +H+++         A+ +L++   
Sbjct: 170 RAVVEVGINHPNEMAMLAELV---APTHLLLTNIGHEHLEFLGDLDGVAKAETQLYDYAR 226

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              + A I ADD   +                      +  + V    + +   + V   
Sbjct: 227 QHGATAFINADDERLRA-AAEGMPFRIDYSLHEAVDSLVWAEDVTVERDGRLSFLLVTKG 285

Query: 299 DFDFLFPLPGEFQVYNALVAAGLC---IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +           +N L A       +  GI    + E L  L   PG          G
Sbjct: 286 RSEQERLRLHFTGRHNVLNAVAAATVGLQFGISLHHICEGLAGLQPAPGWKRLEVVEVGG 345

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
            R+  D Y   S+S+   +  +  +  +GR I V G     GD  + +     +      
Sbjct: 346 VRLLNDTYNANSDSMRRAIDALCDMPCNGRRIAVVGDMLELGDAAEVEH----QAVAHYI 401

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             ++VT           I         G   + +   A +   + +L++ DV++V  KG
Sbjct: 402 QRSLVTKLFTFGTQAAAICRHAPELCYGSYSEHS---ALLDDLLHVLSEGDVVLV--KG 455


>gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 458

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 149/411 (36%), Gaps = 26/411 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + +        +  +  V++D+R +  G +F+A+ G   DGH F  +A  
Sbjct: 1   MIATTLRTLADAIGATLYGD-DAPLAAVTTDTRKLTPGCLFIALQGESFDGHDFAARACE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS           +    P L+V +TR  L   A+ +  + P  ++A+TG+SG
Sbjct: 60  AGAAALLVSR---------RLPLGVPQLLVADTRLALGQLAAWVRSQVPARVVALTGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G   +  G  +               P+ L              +
Sbjct: 111 KTSVKEMSAAILAQCGNVLYTAGNLN----------NDIGVPLTLL---RLEPQHDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   + +   +  +    NL   H++   +      AK  +F  L  + +  I
Sbjct: 158 ELGANHVGEIAYSVALTRPHSALVNNLAAAHLEGFGSLAGVARAKGEIFSGLPAQGTAII 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + +             R       G   +  +V +  +     +     +     P
Sbjct: 218 NADSNDWDNWQQALPTQRVWRFSPQAGSGVDFYASEVRSEVDGTHFVLHTPTGEIAVTLP 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL AA L +++G     V + L  LH VPGR   +    +   +   Y   
Sbjct: 278 LPGRHNIANALAAAALTMSVGASLTQVRQGLAGLHAVPGRLYPIRLGEQQLLLDDSYNAN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIA 413
             S+    + +  +   R++VV      G   +     +G+ A     D  
Sbjct: 338 VGSMSAAAEVLGAMPGYRVMVVGDMAELGVEAEACHRRVGEAARAAGIDKV 388


>gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 464

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 134/383 (34%), Gaps = 22/383 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +   + +S+DSR   AG +FVA+ G K D H F+          +      ++       
Sbjct: 20  DASFDGISTDSRTAPAGSLFVALRGEKFDAHKFMD--------GLAARGVAAVVVERVPK 71

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L+V +TR  L   A     +    ++ VTG++GK++V   +  I   +  +   
Sbjct: 72  GMEIPALIVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEMLAAILGTALGADHF 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +      ++            + L         +   +   E +   +      G+    
Sbjct: 132 LATRGNFNNDIGVPLT----VLRLHAGCRAAVIELGMNHPGEIAQLSMIAQPTLGL---- 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R+H ++  + +A       +    LP    A+  ADD Y+      A   G R
Sbjct: 184 --VNNAQREHQEFMVSVEAVAKENGAVISA-LPANGIAVFPADDPYAPLWRGLATAIGQR 240

Query: 267 V-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             ++ G+           A     ++ +    + F       G+  V NAL A    + I
Sbjct: 241 KVMTFGFSDDADVSCSWKADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIACALGI 300

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    ++  L     V GR +     S    I   Y    +S+   ++ +    S R++
Sbjct: 301 GIGIDAIVRGLAAFAPVNGRLQRKHAASGAQVIDDTYNANPDSVRAAIEVLAQAPSPRVL 360

Query: 386 VV--FGCGGDRDQGKRPIMGKIA 406
           V+   G  G+  +     +G  A
Sbjct: 361 VLGDMGEVGNDGRQYHEEVGAYA 383


>gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
          Length = 466

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 153/451 (33%), Gaps = 37/451 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +S D+R ++AG +FVA+   + DGH F+ QA+ +GA A +V            +
Sbjct: 21  DWQVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQALEKGAGAALV------THRPDDV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G +   
Sbjct: 74  AEDAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVGKTSTKEMLATMLADQGRTHAA 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +   +               P+ LA+         +        +H  +   L       
Sbjct: 134 VASYNNHWGV----------PLTLARMPRETEFAVIEIGM----NHPGEIAPLARQARPH 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +                A    +     E L     A++  D A ++ + + A   G +
Sbjct: 180 VAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNGDIAEAQVLKEEAERLGVQ 239

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            L  G  G+   L +           + ++GK  +      G     NAL A      +G
Sbjct: 240 HLWFGESGQGYRLLETRLEGEHTLAQVEIDGKPLELRIQSLGAHFAMNALGALVCVAGLG 299

Query: 327 IDSA---LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTIT 380
            D+     VL     +     R E      +   +   Y     S+   L+         
Sbjct: 300 GDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALEVLAATPNPE 359

Query: 381 SGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            GR I   G  G+   ++      M  +   ++DI  +    P   +      E   G  
Sbjct: 360 KGRKIAYLGDMGELGPKEAELHRGMADLKA-VSDIDCIHCIGPLMANLHAALPEARRG-K 417

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    +   A+      L+  D+++   KG
Sbjct: 418 HYATSSD---ALPDLAGQLSCGDIVL--AKG 443


>gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 464

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 127/380 (33%), Gaps = 25/380 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +Q   +FVA+   + DGH F+ QA+ +GA A +V            + ++ 
Sbjct: 24  SGVSIDTRTLQPDDLFVALKAAR-DGHDFVAQALEKGAAAALV------THIPDDVAADA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+ +  L         +    ++ VTG+ GK+S    +  I    G +   +   
Sbjct: 77  PLLIVDDVQTALEALGRAARDRCKARVVGVTGSVGKTSTKEMLATILSDQGRTHASVASY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+         +               +      +  +  
Sbjct: 137 NNHWGV----------PLTLARMPRDTEYAVIEIGMNHPGEIAPLARQARPHVALVTTVA 186

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +  +  +          A        L     AI+ AD  ++  +   A   G  ++  
Sbjct: 187 AVHLEAFESVAGIAHEKAAIFEG----LEAGGTAIVNADLDHTDILRTCAARHGAVIVDF 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G       L  V        VT    G+   F     G     N L A   C+A+G+D  
Sbjct: 243 GRTASDYRLTGVTQSPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGALAACVALGVDLD 302

Query: 331 LVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIV 386
             +  L K   V GR   E +     G    +D  Y     S+   L  +      R I 
Sbjct: 303 AAIAGLAKWAPVTGRGVRERLALPDGGQIELLDDSYNANPTSMAAALDVLAAAQGARRIA 362

Query: 387 VFGCGGDRDQGKRPIMGKIA 406
             G   +    +R +   +A
Sbjct: 363 FLGDMKELGPQERAMHAGLA 382


>gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 452

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 145/394 (36%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTL--LGERKV 125

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                            L TP  +  A   +  +  G    + +             I+ 
Sbjct: 126 HFTKGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +    A  N     I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++      +I
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 452

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +    A  N     I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++      +I
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 483

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 82/494 (16%), Positives = 151/494 (30%), Gaps = 56/494 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++++       LI                   SDSR    G +FVAI G   DGH F+
Sbjct: 4   MSVEEIAKAVDGRLIGDADSESRS------TNTVSDSRQAGPGSVFVAIRGEHVDGHDFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-----PE 115
            +   QGA   +V                 P +VV +T   L   A     +        
Sbjct: 58  AKTAGQGATVAIVDHEVE--------SDGLPQIVVKDTVDALGELARHNIVRRRELDGDF 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +I+ +TG+ GK++    +  +    G +   +G  +                I L     
Sbjct: 110 DIIGLTGSVGKTTTKDLLSSLLATVGPTVAPVGSFNNE--------------IGLPLTAL 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +       V+   +SH  +  RL  I     +               +           
Sbjct: 156 RVDEHTRFFVAEMGASHIGEIARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIV 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTI 293
           + L     A++ ADD +   +   A            Q   +    V A    + +   +
Sbjct: 216 QGLLPGGTAVLNADDEHVVPMAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLV 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352
             +G        +PG   V NAL AA + +  G+    V      +  + P R      N
Sbjct: 276 DADGNHTPVHLGIPGRHNVMNALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVN 335

Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCG---GDRDQGKRPI 401
             G         +    +S++  L  ++   S        + + G     G  +      
Sbjct: 336 REGTSFTLIDDSFNANPDSMKAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTS 395

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEML 456
           +G  A +L   AI+   + + +  + +   +  G             +   A +  I++ 
Sbjct: 396 IGTYAAELGIDAIIAVGSAQDQHLDALAQALADGARQSPSASVDCVHDIDAAEQLVIDLA 455

Query: 457 N--KQDVLVVAGKG 468
                 V+++  KG
Sbjct: 456 RNHPDAVVLL--KG 467


>gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 456

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 135/395 (34%), Gaps = 34/395 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L       L+           +   + VS+DSR I  G +FVA+ G + DGH ++
Sbjct: 5   MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   A    G     + A
Sbjct: 56  DQVAAKGAVGALVEHEVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + +   K      TN G  H+      +    A      E + 
Sbjct: 155 YTSAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPERIVEA-KGEILEGVE 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA +      ++       H  ++          T++    
Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFHAGELSRDARGCPSFTMASPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 SAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
              Y     S+   +  +    +GR ++V G  G+
Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367


>gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
          Length = 481

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 163/492 (33%), Gaps = 52/492 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M ++++       L+             +  E  +DSR   +G +FVAI G + DGH F+
Sbjct: 4   MSVEEIAKAVDGRLVAG------DGPAIEATETVTDSRQAGSGAVFVAIKGERVDGHGFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----- 115
            +   QGA A +V    +         +  P +VV++T   L L A     +  +     
Sbjct: 58  DKVADQGAAAAIVDHEVAC--------TTMPQIVVEDTVAALGLLAKHNIDRRRQLPGAF 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           +++ +TG+ GK++    +  +    G +   IG  +               P+   +  +
Sbjct: 110 DLIGLTGSVGKTTTKDLLSALLSTLGPTVAPIGSFN----------NEIGLPLTALRVNA 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      + A+  G                  +G  H+    +++    AK  + +
Sbjct: 160 DTR---FFVAEMGANHIGEIARLTRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQ 216

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            LLP  +  +   DD         + +            +           +  + T++ 
Sbjct: 217 GLLPGGTAVLNADDDYVVPMAQFASGDVLWFGQGHTRDSEVHADHIAADAADHAEFTMTD 276

Query: 296 EGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNS 353
              +       +PG   V NAL AA + +  G+    +      +  + P R      + 
Sbjct: 277 AHGEQVAVHLGIPGRHNVMNALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSR 336

Query: 354 RGGRI---YVDYAHTSNSLEMILKNIRTITSGR-----IIVVFGCGGDRDQGKRPI---M 402
           +G         +    +S++  L  +R   +        + + G   +    +R +   +
Sbjct: 337 QGASFELIDDSFNANPDSMKAGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASV 396

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLN 457
           G+ A  L   AI+T  +P       +   +  G                EA R   ++  
Sbjct: 397 GEYAAGLGLDAIITVGSPSDAHLNVLAESLAEGATRGRAASVDCVQTIDEAERIVFDLAK 456

Query: 458 KQ-DVLVVAGKG 468
              D +V+  KG
Sbjct: 457 NHTDTVVLL-KG 467


>gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 456

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 143/416 (34%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +     VS+DSR I+ G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVVPLDARLVGG---------DCSFVGVSTDSRGIEPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V              +  P LVV +TRK L+   +          + A
Sbjct: 56  DQVAAKGAVGALVEREVQ--------GAVLPQLVVLDTRKALAQLGAMNRNAFLDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + +   K      TN G  H+           A      E L 
Sbjct: 155 YTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA N      ++      ++  ++           I+    
Sbjct: 214 AGGTAVLNLEDKAFPIWRKRAGNRNVLTFALSDSAADVYASELSRDARGCPGFIINSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 TARVQLNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQIVSNGTRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    +GR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-TGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388


>gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
 gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
          Length = 453

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 162/460 (35%), Gaps = 39/460 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + QL+   +   +     VS+D+RHI    +F+A+VG + D H F  QA+  GA A++V 
Sbjct: 9   LAQLTQGQLIGDDAIFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQAVDAGAIALLVE 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A  L             +VV +T+  L    + ++ +     +A+TG+ GK++V   V 
Sbjct: 69  RALDLP---------VAQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q+ G   F  G  +           + P                   + + A+  G 
Sbjct: 120 SILQQKGKVLFTAGNFNNDIGAPLTLLRSEPE-------------DDFAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +    ++       N+   H++   +      AK  +++ L       +         
Sbjct: 167 IAYTTQLVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEY 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                A        +   Q  F     V     K    +    +       + G+  V N
Sbjct: 227 WTQVLADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVAN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A+ + +  G   A +   L  L  V GR +    +     I   Y  +  +++  + 
Sbjct: 287 AIAASIIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIKLIDDSYNASVPAMKAAVD 346

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
            + + T  R +V+      G+        +G+ A  L    ++T      ED   I +++
Sbjct: 347 LLGSFTGQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLT----YGEDTR-IISQL 401

Query: 433 IHGIPGFIEKGNRIEAIRTAIE-MLNKQD---VLVVAGKG 468
             G        +  E I    + + N+ +    ++V  KG
Sbjct: 402 CGG----KHFSDHGELIEYIKQNLANENEACHTVLV--KG 435


>gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
 gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
          Length = 483

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 83/494 (16%), Positives = 154/494 (31%), Gaps = 58/494 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++               P     R+++ V  DSR  +   +F+AI G + DGH FI
Sbjct: 14  MSLQEIAAACGGTYYGGSEFLP-----REVSSVVIDSRKAEKDSLFIAIRGARVDGHSFI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ + QGA   V         +S         + V +  + L   A          ++ +
Sbjct: 69  PKVMEQGALCAVSEEDLGDVPYS--------YIKVASCEQALKDIAEHYRRSLDIKVVGI 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G+ GK+S    +  +  +        G  +               P+ +          
Sbjct: 121 SGSVGKTSTKEMIASVLSQKYSVLKTEGNFN----------NEIGLPLTVFNLRKE---H 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S            +      TN+G  H++   ++     AK  +F  +   
Sbjct: 168 EIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNEN 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKD 299
            +  +   DD           N    V     +    H + +     N            
Sbjct: 228 GTIILNGDDDKLRGY---SPENGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSS 284

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F     +PG   VYNAL A  +  A+G+    +   +E    + GR   +          
Sbjct: 285 FTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAGRNNLIRAPHFTIIDD 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             Y     S++  L  +      R   + G     G+ ++     +G  A+      ++ 
Sbjct: 345 C-YNANPTSMKASLDVL-AFADTRKAAILGDMFELGENEKQMHREVGIHAVRKGIDVLIC 402

Query: 417 DDN-------------------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             +                     +E+     A     I  F  K +    +R A E+L 
Sbjct: 403 IGSLMKSAADGALEYLEQQKNAEHTEETPSSSAHFPTQICHFATKADF---LREAKELLK 459

Query: 458 KQDVLVV-AGKGHE 470
           + D ++V A  G E
Sbjct: 460 EGDTVLVKASHGME 473


>gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
 gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
          Length = 460

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/407 (20%), Positives = 149/407 (36%), Gaps = 33/407 (8%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   E+   L   +    +    I  VS+DSR IQ G +++ +VG   DG LFI + 
Sbjct: 1   MIERSLGEISRMLKAELCDKAYDSHMIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
             + A A ++   Y +++       + P + VD+T K L   A     +     I+ +TG
Sbjct: 61  EDKKAAAFLIDKDYKIKN-----NISIPYIRVDDTLKALQALAKAYRNELSSTKIIGITG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    + ++ ++       IG          +N +  P  I     LS      V
Sbjct: 116 SNGKTTTKDLLYEVLKKKFNVQKTIGNL--------NNEIGVPKTI-----LSLREDCEV 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +   S G        +K      TN+G  H++  +T++    A      E L  E 
Sbjct: 163 AIVEMGTDSFGDISLTTSIVKPDIALITNIGDSHLEKLKTKEGILKA-KMEIVEGLNPEG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I   DD   K+ +        ++           +K V     ++   +S       +
Sbjct: 222 YFIYNGDDPTIKKDISLYTIKQKKISFGENDDNDFVVKDV----GEKLAKVSFSHDGDVY 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             PL G   VYN      +   +G+    + E L ++     R         G  +  D 
Sbjct: 278 EIPLLGSHNVYNGGACLLISSLLGLSKEQIKEGLLEVTPANNRSRI--IEFDGFDVLDDC 335

Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGK 404
           Y     SL   L   + +      I+V G     G+ ++     +GK
Sbjct: 336 YKSNPQSLRSGLNTTKMLGGYDNKILVLGDMLELGESEKDLHYQVGK 382


>gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 7/153 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L      +  E +   +I   Q  +     V SDSR +  G +FV I G + DGH F 
Sbjct: 1   MQLT---PNEMRESLGAGAILGAQG-DATFAAVRSDSRKVAPGDLFVCIRGERFDGHDFA 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              + QGA  ++        +  +   ++  I+VVD++ K L   A+    +    ++ V
Sbjct: 57  ADVVRQGARVLIAERDPFNGECPS---ADVTIMVVDDSVKALGRLANLHRMRSKARVVGV 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TGT+GK++V   + Q+    G ++      +  
Sbjct: 114 TGTAGKTTVKELLAQVLGVRGDTARNPLNLNNQ 146


>gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
 gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
          Length = 460

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 147/413 (35%), Gaps = 37/413 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L      ELI           +  I  VS+D+R+I +  +F+A+ G + D H F  
Sbjct: 5   QLSQLASVLNAELIG---------ADISIAAVSTDTRNIPSETLFIALKGERFDAHDFCQ 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---- 117
            A   GA+A++VS    ++          P LVV +TR  L +  + L  +  E      
Sbjct: 56  TAKDNGAKALLVSKPLPVE---------LPQLVVSDTRIALGMMGAWLKAQMTEKYGLKT 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TG+ GK++V      I    G      G  +            TP            
Sbjct: 107 LALTGSCGKTTVKEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPE----------- 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + A+      +  + +K       N+   H++   + Q    AK  +FE L
Sbjct: 156 --YQYAVIELGANHQNEIFYTTNLVKPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +   +  I +  +  +      A +      +  +Q  +   K           T+    
Sbjct: 214 VQNGTAIINFESNDLALWQPLLAEHQVLTFSTDSHQADYFAEKIKITTQGLACFTMCTPI 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    L G   V NAL AA L +++G   A V   LE +  V GR +     +R   
Sbjct: 274 GKIDINLALAGMHNVSNALAAAALTVSLGATLADVKAGLETMANVKGRLDITEPYARLRL 333

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
           I   Y  +  +++  +  + +    R  +       G+        +G+ A +
Sbjct: 334 IDDTYNASVAAVKAAIDVLASFEGKRYFIFGDMAELGEESDNLHREVGEYAQE 386


>gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
 gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
          Length = 455

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 138/413 (33%), Gaps = 27/413 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++   +   I       +   +   + V +DSR I++G +FVA+VG + DGH F+ +  A
Sbjct: 1   MLKALYLNEIAGPLQGALAGDDVTFDSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A +V                 P L V +TR  L    S     +   + AVTG+SG
Sbjct: 61  KGAVAALVQR--------TMPELGLPQLQVADTRLALGRLGSLNRQAYSGPLAAVTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I +  G      G  +             P                   +
Sbjct: 113 KTTVKEMLASILRTRGPVLATRGNLNNDLGVPLTLLELAPE-------------HVGAVI 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + AS  G   + +   +      TN G  H+      +    A      E LP +  A+
Sbjct: 160 ELGASRIGEIAYTVALTRPQVAIITNAGTAHVGEFGGPEKIVEA-KGEILEGLPADGIAV 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLF 304
           +  DD       +RA        ++         + +          T+     +     
Sbjct: 219 LNRDDPAFDIWQRRAAGRRVLSFALDASDADFLARDIQPDARGCPAFTLRGPAGEARIQL 278

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   V NAL AA    A+G+    +   LE L  V GR       S    I   Y  
Sbjct: 279 NLLGRHNVANALAAASAAHALGMPLVGIRAGLESLQPVKGRAVAQFAPSGVRVIDDSYNA 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDR---DQGKRPIMGKIALDLADIAI 414
              S+   +  +    SGR ++  G  G+     +     +G  A    D   
Sbjct: 339 NPASMRAAIDILAGF-SGRTLLALGDMGELGAWAEEGHRQVGAYAAGKVDALY 390


>gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
 gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 86/490 (17%), Positives = 154/490 (31%), Gaps = 54/490 (11%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+ + +           ++   V  D+R + +G +FVA+ G K DGH F  QA
Sbjct: 1   MIVLSLAEIADVVGGRLHRADPGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQA 60

Query: 64  IAQGAEAIVVSSAYSLQD-----FSATIRSNTPILVVDN-------TRKFLSLFASRLYG 111
           +  GA A++ +             +A       + +  +           L+  A  +  
Sbjct: 61  VEAGAVAVLAAREVDAPAIVVPPLAAGEAHERSVALTGDKDGSGAAVLAALAKLARYVVQ 120

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +  E  L V G +G S   S    I Q        I P  + ++                
Sbjct: 121 RLAEGELTVVGVTGSSGKTSTKDVIAQLLEPLGPTIAPPGSFNNELGHP----------W 170

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            AL   +      + + A   G   H         G   N+G  H+    +++     K 
Sbjct: 171 TALRAGAETRHLVLELSARGPGHIAHLAAIAPPKIGVVLNVGSAHVGEFGSREGIAKTKG 230

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQ 290
            L E  LP++  A++  DD     +  R                 +  + +      +  
Sbjct: 231 ELVEA-LPEDGVAVLNLDDPLVAAMASRTKARVV--FVGESPSAQVRAENITLDDEARAS 287

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFV 349
             +     +     PL GE  V NAL AA + + +G     +   L  L      R E V
Sbjct: 288 FRLITPAGEAGVKLPLHGEHHVGNALSAAAVALELGATPEEIATRLSALERRSARRMEVV 347

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD---RDQGKRPIMG 403
                   +   +     S+   LK +  +T     R   V G  G+           +G
Sbjct: 348 TRPDGVTILNDSFNANPESMRAGLKALAAMTRETGRRSWAVLGVMGELGADSVTAHDEIG 407

Query: 404 KIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIE 454
           ++ + L  A + ++  +           A +  G               +   A     +
Sbjct: 408 RLVVRLNIAKLVVIGPE----------AAAMHQGAHQEGSWGEESTLVPDVEAAAALLHD 457

Query: 455 MLNKQDVLVV 464
            L   DV++V
Sbjct: 458 QLRPGDVVLV 467


>gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
 gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
          Length = 449

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 146/427 (34%), Gaps = 33/427 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A          K   A+I AD     +++    N     +  
Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKNLSITDIHS 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             +      + +   +  +QV +      K  D   P        N      +   +G D
Sbjct: 241 FGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +   HL  +    GR E +   +        Y  +  S++  L+ ++ + +     + 
Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359

Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440
           G     G+  +     + + I         +   N +  +   P KI  +    +   I 
Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPAKIAKKYFKNVDELIT 419

Query: 441 EKGNRIE 447
              +  E
Sbjct: 420 HITDLFE 426


>gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 4/152 (2%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  + +   +  +R    +++DSR IQ G IF+A+ G++ DGH F+ QA+A GA A +V 
Sbjct: 14  LGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVAQALADGAIAAIVD 73

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
             Y      A       +L VDNT       A     +    ++ +TG+ GK++    + 
Sbjct: 74  RDYQPPSDLAAGH----LLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVGKTTTKELIA 129

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            +    G         +      +      P 
Sbjct: 130 AMLAVRGPVLKTEANYNNEIGVPKTVLQIDPD 161


>gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
 gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
          Length = 476

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 80/464 (17%), Positives = 145/464 (31%), Gaps = 43/464 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              E+ +  +S DSR++    +FV IVG K D H FI QAI  GA A+  S+   +    
Sbjct: 20  GNEEQVLANISLDSRNMSGLDLFVPIVGEKVDAHRFICQAIGNGAVAVFTSAHRDISQVE 79

Query: 84  ATIRS------------NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
             I                  + V++T+  L         +    ++ +TG+ GK++   
Sbjct: 80  KAIADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPLVGITGSVGKTTTRE 139

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +              G +++                             +  + +  S 
Sbjct: 140 MIAAALSAGYAVYRTPGNSNSQVGVPITMSSIPSEA-------------EIAVIELGMSE 186

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +       + +   TN+G  HI+   +Q+     K+ + + +   E    +  DD 
Sbjct: 187 PGEMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGM-NPEGILFVNGDDP 245

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              ++         R       G     + V         T     K       + G   
Sbjct: 246 LLADIQAEGGRRIIRYGM--SAGCEYRAEDVRLDEGYPVFTAVHGEKRTPVRLQVMGTHM 303

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A  +    G+D       L +     GR +  G       I   Y  +  S++ 
Sbjct: 304 VGNAMAALAVAAEYGVDMEEAARKLGEFGGYKGRQQIHGFQGM-TIIDDSYNASPVSMKA 362

Query: 372 ILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPE 426
            L+ + ++  G R I V       G         +G+ IA    D  ++       E   
Sbjct: 363 GLEVLSSMKPGARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLL-----YGELAA 417

Query: 427 KIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I   +    G   F+  G+  +            D ++   KG
Sbjct: 418 AIGEGLREAGGQSPFLLCGSLEQVKEWLKRETKSGDCILF--KG 459


>gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 459

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 94/463 (20%), Positives = 154/463 (33%), Gaps = 61/463 (13%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
            + ++  V+ DSR +  G +FVA+ G +  DGH F P A+  GA A++ +          
Sbjct: 22  PQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPSAVRAGAVAVLAAR--------- 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143
               + P ++VD+    L  +A        E +++A+TG+SGK+S    + Q+ QR+G +
Sbjct: 73  --PLDVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSGKTSTKDLIAQVLQRAGAT 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            F  G  +            T                    V + A   G   +      
Sbjct: 131 VFTQGSFNNEIGLPITALEATAD-------------TRHLVVEMGARGQGHIAYLTQITP 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHN 262
              G+  N+G  H       +    AK  L E      E    +   D      M     
Sbjct: 178 PRIGAVLNVGTAHAGEFGGPEMTAKAKGELVEALPSEAEGGVAVLNADDARVAAMSARTK 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A      V                 +   T+     D      + GE QV NAL AA + 
Sbjct: 238 ARVVTFGVERSADVYATDVTLDGQGRASFTLHTPTGDAPVRLQVVGEHQVPNALAAAAVA 297

Query: 323 IAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-- 379
            A G+D+A + + L        GR            +   Y   ++S    L+ +  +  
Sbjct: 298 EAAGMDAAQIGKALTAAESLSEGRMRVTERPDGVTVVNDAYNANADSTAAALRALAHLGR 357

Query: 380 -TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             +GR I + G     G     +   +G +A  L    +V                +  G
Sbjct: 358 ERAGRTIALLGEMRELGASSAEEHRRIGALAAVLGIDVLV---------------AVGEG 402

Query: 436 IPGFIEKG----NRIEAIRTAIE------MLNKQDVLVVAGKG 468
               +        R+EA + A             DV++V  KG
Sbjct: 403 DARVLATEYGPDGRVEATKAAAGEWLSRYNFRAGDVVLV--KG 443


>gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
 gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
          Length = 473

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 122/364 (33%), Gaps = 20/364 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP- 91
           V  DSR +Q G IFVA+ G + DGH +I    A+GA   VVS A+          +    
Sbjct: 33  VVIDSREVQEGGIFVALEGERTDGHRYIDDVFAKGASLAVVSEAWYASHGQKDGAAGRRS 92

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+VD+T + L   A          + AV G++GK++    +          +  +G   
Sbjct: 93  YLIVDDTVRGLQQMAVAYRRSFSIPVFAVGGSNGKTTTKELI----------ASVLGVGF 142

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +     +       P+ L +         +  V +  +  G  +          G  TN
Sbjct: 143 KVHMSRGNRNNHLGVPLTLLQMKRD---TEIAVVEMGINHPGEMELLASIAMPTHGLLTN 199

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVL 268
           +G +H+++    Q    A+ RL+E L        + ADD +   +   ++RA   G    
Sbjct: 200 IGHEHLEFLHDLQGVAAAETRLYEYLDGHGGVCFVNADDPWLLSAASKLERAVLYGLNGC 259

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             G               +     +S   +                A  AAG  + + + 
Sbjct: 260 GEGVPHAESAALDPFGRPSFMLC-LSQACESVTLSLTGRHNVVNALAAAAAGSYLGLSLR 318

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVV 387
                           R EF         +   Y    +S+ + +  +  +   GR I V
Sbjct: 319 EIKEGLENMIPATGWKRLEFQEAGGV-MIVNDTYNANPDSMRLAIDLLCDLQCSGRKIAV 377

Query: 388 FGCG 391
            G  
Sbjct: 378 LGDM 381


>gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 473

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 83/494 (16%), Positives = 154/494 (31%), Gaps = 58/494 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++               P     R+++ V  DSR  +   +F+AI G + DGH FI
Sbjct: 4   MSLQEIAAACGGTYYGGSEFLP-----REVSSVVIDSRKAEKDSLFIAIRGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ + QGA   V         +S         + V +  + L   A          ++ +
Sbjct: 59  PKVMEQGALCAVSEEDLGDVPYS--------YIKVASCEQALKDIAEHYRRSLDIKVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G+ GK+S    +  +  +        G  +               P+ +          
Sbjct: 111 SGSVGKTSTKEMIASVLSQKYSVLKTEGNFN----------NEIGLPLTVFNLRKE---H 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  S            +      TN+G  H++   ++     AK  +F  +   
Sbjct: 158 EIAVLEMGISGFEEMTRLAKVARPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNEN 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKD 299
            +  +   DD           N    V     +    H + +     N            
Sbjct: 218 GTIILNGDDDKLRGY---SPENGITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSS 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F     +PG   VYNAL A  +  A+G+    +   +E    + GR   +          
Sbjct: 275 FTAHINIPGAHMVYNALAATAVGYALGMTDREICAGIEANVPIAGRNNLIRAPHFTIIDD 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             Y     S++  L  +      R   + G     G+ ++     +G  A+      ++ 
Sbjct: 335 C-YNANPTSMKASLDVL-AFADTRKAAILGDMFELGENEKQMHREVGIHAVRKGIDVLIC 392

Query: 417 DDN-------------------PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             +                     +E+     A     I  F  K +    +R A E+L 
Sbjct: 393 IGSLMKSAADGALEYLEQQKNAEHTEETPSSSAHFPTQICHFATKADF---LREAKELLK 449

Query: 458 KQDVLVV-AGKGHE 470
           + D ++V A  G E
Sbjct: 450 EGDTVLVKASHGME 463


>gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 427

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 93/482 (19%), Positives = 183/482 (37%), Gaps = 60/482 (12%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L+ K FP L            + KI  V  DSR I  G +F AI     +G+ ++ 
Sbjct: 3   RLCQLLQKKFPSL-----------PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQ 47

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+ +GA  ++               ++  ++ V+NT   +   A          ++A+T
Sbjct: 48  EALDKGASLVIADR---------YSGNHEKVIKVENTILVMQELAEEYRRCLKTKMIAIT 98

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    +  I  ++  +   +G          +N +  P  I   +     +   
Sbjct: 99  GSNGKTTTKDIIYAILSKTFQTKKTLGN--------YNNHIGLPFTILNLEEKDEFA--- 147

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G         +   G  TN+G  H+++ +T++  F AK  L   L    
Sbjct: 148 --VLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELLPYL---- 201

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                          +    +   + +   + G           + K+    S +  D  
Sbjct: 202 ----------PEGCFITSGDDVFLKKIPAIHVGYDERNDYRIFGYKKKDRRSSFQLNDKQ 251

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +  PL G+  V NA +   +   IG+DS  + ++L ++ + P RFE              
Sbjct: 252 YEIPLEGKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIELSPMRFERSEYQGTKYINDA- 310

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDD 418
           Y  +  S+ + L ++   T+   I V G     G+++      + + A+  +  AI+   
Sbjct: 311 YNASPISMGVALDSLVETTAECKIAVLGDMLELGEKEVTFHKDVIEKAISCSLQAIL-LY 369

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG 478
            PR     K   +    IP  +    + E I+  ++   ++ VL+ A +G +   I+   
Sbjct: 370 GPR----MKKALQEFSNIPNKVLHFEKKEEIKDYLKQFPRKTVLIKASRGMKLEEIIERE 425

Query: 479 EK 480
           EK
Sbjct: 426 EK 427


>gi|288926619|ref|ZP_06420534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
 gi|288336588|gb|EFC74959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
          Length = 439

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 117/364 (32%), Gaps = 25/364 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF A+ G   DG+ F   A+ +G    V+      ++       N  +
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEG------NGRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN        A     +     + V G +G +   +  + I    G     +     
Sbjct: 70  ILVDNVLTTFKELAREHRRRFD---IPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGN 126

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++     +             S      +  V + AS  G  +  +D ++   G  TN+
Sbjct: 127 FNNDVGVPK----------TLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L        +   +    E+  + +           
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLESHNGLLFLNESNPDLMEMAAQRNFGRIISYGRDE 236

Query: 273 QGK-----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G            +     +      +    ++    L G + + N L A  + +  G+
Sbjct: 237 GGNVEGEVIDCSPFLNFRWRQHLHAGQMPANAYEVETHLIGAYNLDNMLAAIAVGLHFGV 296

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +   L        R +   T      I   Y    +S+   + N + + + R + +
Sbjct: 297 SPAQINHALGHYIPSNNRSQLETTE-HNRLIVDAYNANPSSMAAAIDNFKLMKAERKMAI 355

Query: 388 FGCG 391
            G  
Sbjct: 356 LGDM 359


>gi|158834066|gb|ABW81838.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 121/254 (47%), Gaps = 3/254 (1%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N  TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           H     Y  AK  LF +   K     +       +  E+      +    +  G QG ++
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWL 125

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +K+    N   +         +   PL G F V N L+     +A+      +L+   
Sbjct: 126 SAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAAS 185

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+G
Sbjct: 186 KLQPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKG 244

Query: 398 KRPIMGKIALDLAD 411
           KRP+MGKIA  LAD
Sbjct: 245 KRPLMGKIAETLAD 258


>gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
 gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
          Length = 478

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 91/468 (19%), Positives = 166/468 (35%), Gaps = 54/468 (11%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR I  G  + AI G+  DGH F+  A+  G    V++ ++  +        +
Sbjct: 27  VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGVAVIAQSHRAE-----FPDD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV +    L   A     +    I+AVTG+ GK+S    ++ + Q  G +      
Sbjct: 82  LPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGKTSTKEALRTVLQAQGKTHASAAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  S           +  +  G  +  +  ++      
Sbjct: 142 FNNHWGV----------PLSLARCPSSAR---FAIFEIGMNHAGEIEPLVKLVRPHLAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+++    +A  +AK  +F  L P  +  +   +  +++   K   +   R+++
Sbjct: 189 TTVEPVHLEFFSGIEAIADAKAEIFTGLEPDGAAILNIDNSQFARLRDKAKASGVSRIVT 248

Query: 270 VGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G   K    L  V        V   +   D  +   +PG     N+L         G D
Sbjct: 249 FGENAKADARLLDVALHGECSAVHADLLHHDVTYKVGVPGRHMAMNSLAVLAATTLAGAD 308

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI---TSG 382
            AL    L +     GR         GG + +    Y     S+   +  +        G
Sbjct: 309 LALSALALAEFRPAAGRGVRQMLELPGGAVTLIDESYNANPASMTAAMNVLGQTAIGPRG 368

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPR--------------SED 424
           R I V G   +     R + G +A  +A    D+        R              +ED
Sbjct: 369 RRIAVLGDMLELGPKGRELHGGLAASVAANKIDLVFCCGPLMRALWDALPSAKKGGYAED 428

Query: 425 PEKIRAEIIHGIPGFIEK------GNRIEAIRTAIEM-----LNKQDV 461
             K+ ++++ GI            G+R++ I TA+E       +  D+
Sbjct: 429 SAKLESQLVAGIRAGDAIMVKGSLGSRMKLIVTALEKNFPSGADADDL 476


>gi|302518532|ref|ZP_07270874.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB78]
 gi|302427427|gb|EFK99242.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB78]
          Length = 144

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 9/131 (6%)

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +L+++R +T GR+ VV GCGG RD  KR  MG  A  LAD A++T DNPRSEDP  I A 
Sbjct: 1   MLRSLRRVTEGRVHVVLGCGGARDTTKRGPMGAAAARLADTAVLTSDNPRSEDPLAILAA 60

Query: 432 IIHGIPG--FIEKGNR------IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
           ++ G       E+G+         AI   +      D +++AGKGHE    V NG  +  
Sbjct: 61  MLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKGHEQGQDV-NGVVRPF 119

Query: 484 VDCDIIREILG 494
            D ++++E + 
Sbjct: 120 DDREVLKEAIR 130


>gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51]
 gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 468

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 80/472 (16%), Positives = 162/472 (34%), Gaps = 39/472 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +++++     +L+           +  +  V +DSR +  G +FV + G K D H F+
Sbjct: 5   MTVREIVAACGGKLL-------CGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A +      ++   A        + VD+T+  L   A+    +    ++ +
Sbjct: 58  HAAFASGAAAALTQEHTRMEAEEA-------WIAVDSTQLALQHIAAAYRQRFSIPVVGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++                   G          ++++  P          +    
Sbjct: 111 TGSAGKTTTKEMTALALSAGYKVMKTGGN--------HNSQIGLP-----LMMFQFSREH 157

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V +  S  G +  RL  + +      TNLG  HI   +TQ+     K+ + +    
Sbjct: 158 EAAVVEMGISDFG-EMARLAQVAEPKYAVMTNLGITHIGQLKTQENILREKLHITDRFT- 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S   +  DD     +  +         +  +         V       +  ++   + 
Sbjct: 216 QGSVLFLNGDDPMLAGLRGKTGYEAVFYGTAPWCDFRAEGITVQGETTAFRC-LAPGRES 274

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            + + P+ G   V +AL A  +   +G+        L     +  R +    N     I 
Sbjct: 275 VEVILPVLGMHHVLDALAALAVAERLGVPLDRAAAALGDYRPLAMRQQIYHVNEV-AVID 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             Y  +  + +  L  +    +GR + V       G+  +     +G  A +     ++T
Sbjct: 334 DSYNSSPGAAKSSLSVLAGFRAGRRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLT 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              P ++   +    +  GI   +   NR  A       L+  D ++V  KG
Sbjct: 394 V-GPEAKAVAEGARSVRSGIDCRVFDHNRQAA-AELKSFLSPGDAVLV--KG 441


>gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 465

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 160/476 (33%), Gaps = 38/476 (7%)

Query: 1   MKLQ--DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL    +      EL +     P           S DSR +    +F A+ G++ DGH 
Sbjct: 1   MKLTLEQIARWCSAELRSSQPARPA-------TGYSIDSRTLATDDLFFAVKGDRFDGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+  AI +GA   VVS A + +     +  +  +L+VD+    L   A+ +     + ++
Sbjct: 54  FVAAAIHRGAVGAVVSRARAAELLP--LIDHASLLLVDDPLAALQQLAAAVRRHWGKRVV 111

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYL 177
            VTG++GK++    +  +           G   +      Q  RL T   I + +     
Sbjct: 112 GVTGSAGKTTTKEAIAAVLGAGYRVLKSQGNLNNNFGLPLQLLRLDTEDEIAVIEMGMNH 171

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +      +     G                TN+G+ H++      A          + 
Sbjct: 172 AGEITALARIAMPDWG--------------VVTNVGKAHVENFTDGIAGVARAKYELVQA 217

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP E  A +  DDAY  +   R  +    +   G        +         ++T+S EG
Sbjct: 218 LPAEGIAFLNCDDAYVSQF-GRDFHGRVILFGRGPCAHLRVEQLENLGAEGTRLTVSAEG 276

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +       L GE  V NAL A  + +A  I   +    LE L     R + +        
Sbjct: 277 RCATLHLHLLGEHNVSNALAALAVGLAAEIPLEIGARALESLRADEKRGQIIPWRGASIV 336

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLADIA 413
               Y     +L+ ++  +  +   R I+V       G +            A    DI 
Sbjct: 337 NDC-YNSNPEALKAMIATLMGMPGNRHILVAGEMLELGAEAPALHAACGEAAAAAKVDIV 395

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           +      R     +I           +      +A       L + D +++ A +G
Sbjct: 396 V----GVRG-AASQIVDAARRAGADAVYVETPEDAGIWLKANLREGDAVLLKASRG 446


>gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 464

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 127/367 (34%), Gaps = 25/367 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +Q G +FVA+   + DGH F+ QA+ +GA A +VS           +  + 
Sbjct: 24  TGVSIDTRTLQPGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------IPEGVPEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+ +  L         +    ++ VTG+ GK+S    +  I +  G +   +   
Sbjct: 77  PLLIVDDVQTGLEALGHAARARTAARVVGVTGSVGKTSTKEMLASILETRGKTHASVASY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+         +        +H  +   L           
Sbjct: 137 NNHWGV----------PLTLARMPRDTEYAVIEIGM----NHPGEIAPLAHQARPHVGLV 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                         A   A+     + L     AI+ AD  ++  +  RA   G +++  
Sbjct: 183 TTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGTAIVNADIEHAGILRSRAQARGAKIVEF 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G   +   L  V    +  +    V   +  F     G     NAL A   C+ +G+D  
Sbjct: 243 GRMARDYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGALAACVELGVDLD 302

Query: 331 LVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIV 386
             +  L     V GR   E +   +      +D  Y     S+E  L  +      R I 
Sbjct: 303 QAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSMEAALDVLAASAGQRRIA 362

Query: 387 VFGCGGD 393
             G   +
Sbjct: 363 FLGDMKE 369


>gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
 gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
          Length = 466

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 158/452 (34%), Gaps = 47/452 (10%)

Query: 30  INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   V  DSR   AG +FVA  G K DGH +          A    +  ++         
Sbjct: 26  VTGPVEFDSRKAGAGGLFVAFPGEKVDGHDY----------AAAAVAGGAVAVLGTREVP 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             P+++V +    +   A  +  + P   ++ +TG+SGK++    + Q+  R G +    
Sbjct: 76  GVPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGSSGKTTTKDLIAQLTVRLGPTVAPP 135

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLI 205
           G  +                       +  + Q    + +E  + G+   R     +   
Sbjct: 136 GSFNNELG---------------HPWTALQADQDTRFLVLEKGARGVGHVRYLCEVVPPR 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+G  H+    + +    AK  L E  LP +  A++ ADD     +  R      
Sbjct: 181 ISVVLNVGVAHLGEFGSVENIALAKGELVES-LPADGLAVLNADDPLVDVMAARTAARVV 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R     +         +     +   T+            L G  QV N+L AA +   +
Sbjct: 240 RYGEAAHADVRAVDVTLDGRG-RAAYTLVTPEGSAAVRLGLTGRHQVSNSLAAAAVAREL 298

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTIT-SGR 383
           G+  A +   L +L +V  R   V     G  +  D Y     S  + L+ +  +  +GR
Sbjct: 299 GMPLAELAAALGELGLVSTRRMDVFERPDGVTVIDDSYNANPASTAVALRALAGMRGAGR 358

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKI---RAEIIHGI 436
            + V G     G+ ++     +G++A +L  D  +V       E    I      +    
Sbjct: 359 AVAVLGYMAELGEYERQGHLEVGRLAAELGVDRLLVV-----GEPAAPIHEGATAVEDWG 413

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +   ++  A+      L   DV++V  KG
Sbjct: 414 GESVLLTDQAAAVEVLRSELRPGDVVLV--KG 443


>gi|158834096|gb|ABW81853.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/254 (33%), Positives = 122/254 (48%), Gaps = 3/254 (1%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N  TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           H     Y  AK  LF +   K     +       +  E+      +    +  G QG ++
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWL 125

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +K+    N   +  +      +   PL G F V N L+     +A+      +L+   
Sbjct: 126 SAQKIQYHENGAFIFFNSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAAS 185

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+G
Sbjct: 186 KLQAIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKG 244

Query: 398 KRPIMGKIALDLAD 411
           KRP+MGKIA  LAD
Sbjct: 245 KRPLMGKIAETLAD 258


>gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 460

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 132/370 (35%), Gaps = 23/370 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
            I      +  I ++S++SR+ ++  +F+AI G   DGH F  Q++  G+ AI+     S
Sbjct: 19  KISCFHASKLIIQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVKNGSLAILSEKILS 78

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
           +           P ++V+NT   +   AS +  K     +A+TG+SGK+SV      I  
Sbjct: 79  IDH---------PQIIVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSVKEMTHTILS 129

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
           + G +       +                  L   L          + + AS  G  +  
Sbjct: 130 QVGSTISTKKNNNNSLGV-------------LLTLLRVNEFHQYVVIEIGASQLGEIKFS 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +        NL   H+    +      AK  +F  L    +  I   +        K
Sbjct: 177 SKIVNPDVVLINNLFASHLKGFGSFSNLSRAKSEIFFGLSKFNTAVINLDNHDIKHWKHK 236

Query: 259 RAHNAGCRVLSVGYQGKFIHLKK-VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             + +     S+  + K       +   +   +  I            L G   + N++ 
Sbjct: 237 IRNLSKVWFFSLKKKKKSHFYSNTISEKNFFMKFDIHTPFGIARVSSHLAGLHNISNSIA 296

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           +A L I++G     + + L+  H + GR   V  +S    +   Y     S++  +  + 
Sbjct: 297 SAALSISVGAKIDQIEKGLKNFHPIDGRMYPVYISSEKIILDDTYNSNFGSMKSAIDVLS 356

Query: 378 TITSGRIIVV 387
            +   R++VV
Sbjct: 357 KMPGYRVLVV 366


>gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
 gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
          Length = 434

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 139/423 (32%), Gaps = 33/423 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR      IF+A+ G   DG+ F   A+ +G    ++            +  ++  
Sbjct: 16  VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEK------EYAVEGDSRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++ DNT       A     +    ++ +TGT+GK++    V  +           G  + 
Sbjct: 70  ILTDNTLTTFKELAREHRRQFDIPVIGITGTNGKTTTKELVSAVLSEKYNVMHTEGNFNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                    +  P  +     L       +  V + AS  G     +  ++   G  TN+
Sbjct: 130 D--------IGVPKTL-----LRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   ++   +   + +  +++++ +           
Sbjct: 177 GRAHLLGFGSFEGVKKTKGELYDFLAENDALVFLNESNPHLVKMVQQRNINRVITYGQDE 236

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                     CA   K       E + ++    L G + + N L A  + +  G+D   +
Sbjct: 237 DANIQGEVLSCAPFLKFNWRKEGEPQLYEVQTQLIGAYNIDNMLAAITIGLHFGVDPVQI 296

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              LE       R +          I   Y    +S+   L+N + +     + + G   
Sbjct: 297 NHALENYCPSNNRSQLT-VTENNKLIVDAYNANPSSMAAALENFKVMAVSPKMAILGDMR 355

Query: 393 DRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           +          KIA  L     D   +       E+ EK           F       EA
Sbjct: 356 ELGNVSDAEHQKIADMLKECNIDKVWLV-----GEEFEKTN----CNFTKFHNVDEVKEA 406

Query: 449 IRT 451
           IR 
Sbjct: 407 IRQ 409


>gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
 gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
          Length = 477

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/466 (18%), Positives = 158/466 (33%), Gaps = 34/466 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA 
Sbjct: 6   TSSDLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAA 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VVS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++ 
Sbjct: 66  LLVVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ +    G     +   +               P+ LA       +       +  
Sbjct: 122 KEMLRHVLSPLGRVHASVASFNNHWGV----------PLTLA---RMPETTDFGVFEIGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G        ++      T++   H+    +      AK  +FE ++      I    
Sbjct: 169 NHAGEILPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVI--NR 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPL 306
           D+   ++++RA  A        +        ++       + ++      G+  +     
Sbjct: 227 DSAQYDLLERAAAAAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YA 363
           PG     NAL A       G D+  V      +    GR          G    +D  Y 
Sbjct: 287 PGRHIAENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYN 346

Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
               S+   +  +R       GR I V G   +  +    +   +A  + +  I  D   
Sbjct: 347 ANPASMRAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGI-ADVWL 405

Query: 421 RSEDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVV 464
              +   +R  +   +        G+       A+  ++  DV++V
Sbjct: 406 AGPEMAHLRDALPPEVSVVHRDVVGDLT---AYALGAVSAGDVVMV 448


>gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 455

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 139/428 (32%), Gaps = 40/428 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P     + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLNLPTSSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAALDGALKVDDTLAALQTLAKAWRDNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R       +      ++           P+ L      
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + +  +  G         K  A    N  R H+                  +
Sbjct: 153 NEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQ 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L ++  A+I  +D ++     +  + G +  + G     +H + +       +  +   
Sbjct: 213 GLGEDGLALIPCEDEHAAVF--QTSSQGHQQQTFGVDSGDVHAENIVLKPLSCEFDLVCG 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +    + P+PG   V+NA  A  L +A G+    V E L+    + GR           
Sbjct: 271 DERAAVVLPVPGRHNVHNAAAAGALALAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKGAT 330

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411
            I   Y    +S++  +  +  + + R I V G  G+  + +   M       A     +
Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389

Query: 412 IAIVTDDN 419
            A    DN
Sbjct: 390 AAYFVGDN 397


>gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 518

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 91/488 (18%), Positives = 149/488 (30%), Gaps = 51/488 (10%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I    +         ++  V  DSR I  G +FVA+ G   DGH F   AIAQGA  ++ 
Sbjct: 12  ITGGRLSDDADPHAVVDGFVEFDSRKITPGGLFVALPGKHVDGHNFARDAIAQGAAGVLA 71

Query: 74  SSAY---------------SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           +                       +A     +   VV    K  S  AS L  +H  +I+
Sbjct: 72  AKDVGVAAVIMPKAAKREGDNSGLAANDPDGSAAGVVSGMSKLASYVASTLTAEHGLSIV 131

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK+S    V  +   +G +    G  +            T              
Sbjct: 132 GITGSAGKTSTKDLVASVLSAAGQTVAPPGSFNNELGHPYTVLRCT-------------E 178

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEE 236
           S       + A   G   H         G   N+G  H+    +++    A  ++     
Sbjct: 179 STKFLVAEMSARGIGHIAHLATIAPPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEALP 238

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +   AI+ ADD     +  R                +           +   T+   
Sbjct: 239 SAAEGGVAILNADDPLVAGMAPRTRARVVTFSGQHGAADYYATDISLDDVTRASFTLHSP 298

Query: 297 GKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP-GRFEFVGTNSR 354
             +       + G  QV NAL AA + I  GID+A V   L   H     R +       
Sbjct: 299 HNEPQRVELNVFGAHQVSNALAAAAVGIESGIDAATVARSLSSAHGESGNRMDVQTRADG 358

Query: 355 GGRIYVDYAHTSNSLEMILKNI----RTITSGRIIVVFGCGGD---RDQGKRPIMGKIAL 407
              I   Y    +S+   +  +          R I V G  G+           +G    
Sbjct: 359 VTVINDAYNANPDSMRAGIAALGFTAAARPGVRSIAVLGEMGELGGDSVSAHRELGNELA 418

Query: 408 DL-ADIAIVTDDNPRSEDPEKIRAE---IIHGIPGFIEKGNRIEAIRTAIEMLNKQ---- 459
                  +   DN   +  +    +    +       E  + ++AI +   M  +     
Sbjct: 419 RYRVTHLVAVGDNDAMDALKDRARDRGIYVASARDVEEATSLVQAILSVPPMGEEGWYER 478

Query: 460 ---DVLVV 464
              DV++V
Sbjct: 479 DARDVVLV 486


>gi|158834056|gb|ABW81833.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834058|gb|ABW81834.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834060|gb|ABW81835.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834062|gb|ABW81836.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834064|gb|ABW81837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834072|gb|ABW81841.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834088|gb|ABW81849.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834090|gb|ABW81850.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834092|gb|ABW81851.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834098|gb|ABW81854.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834100|gb|ABW81855.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 120/252 (47%), Gaps = 3/252 (1%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DYH 
Sbjct: 8   NTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDYHG 67

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               Y  AK  LF +   K     +       +  E+      +    +  G QG ++  
Sbjct: 68  DMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLQGAWLSA 127

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K+    N   +         +   PL G F V N L+     +A+      +L+   KL
Sbjct: 128 QKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAASKL 187

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKR
Sbjct: 188 QPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKR 246

Query: 400 PIMGKIALDLAD 411
           P+MGKIA  LAD
Sbjct: 247 PLMGKIAETLAD 258


>gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 456

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 133/395 (33%), Gaps = 34/395 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L       L+           +   + VS+DSR I  G +FVA+ G + DGH ++
Sbjct: 5   MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   A    G     + A
Sbjct: 56  DQVAAKGAVGALVEHEVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + +   K      TN G  H+           A      E + 
Sbjct: 155 YTAAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPDRIVEA-KGEILEGVE 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA +      ++       +  ++          T+     
Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGHRNILTFALADAAADFYASELSRDARGCPSFTMDSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 SAQVQLNLLGTHNVTNALAAAAAAGALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
              Y     S+   +  +    +GR ++V G  G+
Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367


>gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
 gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
          Length = 466

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V          
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQPIDA---- 86

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                N   LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 87  -----NIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +L  +  AI+   D ++ E+ + A +
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHIL-PQGVAIVPQQDDFTTEIREAAKS 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                   G     +   ++  +       +           P  GE  V NA  A    
Sbjct: 248 HHIMSFGTG---GDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLDDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+    L  D  I
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAQLPLDHII 398


>gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 456

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 134/395 (33%), Gaps = 34/395 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L       L+           +   + VS+DSR I  G +FVA+ G + DGH ++
Sbjct: 5   MTFSELTVPLDARLVGG---------DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   A    G     + A
Sbjct: 56  DQVAAKGAVGALVEHEVEGAA--------LPQLVVLDTRKALAQLGAMNRNGFVDRPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G   + +   K      TN G  H+      +    A      E + 
Sbjct: 155 YTSAVIELGASRVGEIAYTVSLTKPHVVIITNAGTAHVGEFGGPERIVEA-KGEILEGVE 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  +D       KRA        ++       H  ++          T++    
Sbjct: 214 ASGTAVLNLEDKAFPIWRKRAGPRNILTFALADAAADFHAGELSRDARGCPSFTMASPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    ++  L  +  V GR      ++    I
Sbjct: 274 SAQVQLNLLGTHNVTNALAAAAAACALGVSLEGIVAGLNNVQPVKGRAVAQIASNGVRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
              Y     S+   +  +    +GR ++V G  G+
Sbjct: 334 DDTYNANPGSINAAVDILTGF-TGRTVLVLGDIGE 367


>gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 503

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++ A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYSALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV +T   L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVER--------LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   +  +  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   +   G      I  +++       Q T+   
Sbjct: 218 DGVAVINADDAFGIWFEQQLQAQPVQGRCIVRYGLQIGADITARQLQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL A GL +  GI   ++   L + H V GR +   T   G 
Sbjct: 278 QGEAQVALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGEGWLVLGDMRE 373


>gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 428

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/437 (18%), Positives = 155/437 (35%), Gaps = 38/437 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSRH   G +F+A+ G   +G+ F  QA+AQG    VV      +  S         
Sbjct: 16  VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCRYAVVDEPEYARGES--------Y 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L   A+    +    I+ +TGT+GK++    V  +  +     F  G  + 
Sbjct: 68  ILVDDCLQVLQQLANYHRRQLKTPIIGITGTNGKTTTKELVSSVLSKKYKVLFTQGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L           +  V + A+  G  +  +   +   G  TN+
Sbjct: 128 H----------IGVPLTLL---RLNKEHEMAVVEMGANHPGEIKALVQIAEPDYGLITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H+    + +     K  L++ L  K +  I   ++      +      G   +  G 
Sbjct: 175 GKAHLLGFGSFEGVIKTKGELYDFLREKGNATIFIQNENSYLNAIA----HGLHCVRYGQ 230

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   K+ +           E   +     L G + + NAL +  +     +    +
Sbjct: 231 ASGLFVSGKLLSCSPFLAFEWMSERNTYPVQTHLIGAYNLDNALASVAVGKYFDVAPEDI 290

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E L        R + V T  R   I   Y     S+   L+N R + +   +V+ G   
Sbjct: 291 CEALSTYMPQNNRSQLVDTG-RNKLIVDAYNANPTSMMAALENFRQVQAPHKMVILGDM- 348

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                    +G+ +L+     +   D  R  D   +       +    E  + ++A++ A
Sbjct: 349 -------KELGEASLEEHRKIVGFLDGCRF-DRVMLAGPEFKAVASAYEHFDNVDAVKEA 400

Query: 453 IEMLNK-QDVLVVAGKG 468
           +E        +++  KG
Sbjct: 401 LEKSKPVGFTILI--KG 415


>gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
 gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
          Length = 504

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 160/496 (32%), Gaps = 53/496 (10%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L  +   E ++  ++      +  +   V  DSR I  G IF+A+ G + DGH F   A
Sbjct: 3   ELTTQKIAE-VSGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFADAA 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATI------RSNTPILVVD------NTRKFLSLFASRLYG 111
           +  GA  ++V          A         SN      D           +   A     
Sbjct: 62  LNSGAALLIVGRPVEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYNTD 121

Query: 112 KHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                     + VTG++GK+S    +  + + +G +    G          +N +  P  
Sbjct: 122 VLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGS--------FNNEIGLP-- 171

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL            + A   G  QH         G   N+G  H+    ++QA  
Sbjct: 172 ---YTALRAGRDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIA 228

Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------KFIH 278
            A  ++            A++ ADD     + KR      R  + G  G        +  
Sbjct: 229 QAKGELVEALPAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYAT 288

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE-HLE 337
             ++ A+     +     G+       + G  QV NAL AA + I +GID+A V      
Sbjct: 289 DIELDAVARASFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSS 348

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGCG- 391
            +     R +     S G  I  D Y     S+   +  +     GR       V G   
Sbjct: 349 HVAASVNRMDVRTRESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQMG 408

Query: 392 --GDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             G+    +   +G + A    D A++        +   +               N   A
Sbjct: 409 ELGEDASDEHAELGHVLAQRRIDHAVIVG---NGVNQRALANAARESGVETQVVENIDGA 465

Query: 449 IRTAIEMLNKQDVLVV 464
           +      LN QDV+++
Sbjct: 466 VNYLDMSLNPQDVVLI 481


>gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
 gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
          Length = 472

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 90/461 (19%), Positives = 158/461 (34%), Gaps = 54/461 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R I  G +FVA+   + DGH F+  A+ +GA A +V            +  + 
Sbjct: 24  SGVSIDTRTIAKGDLFVALADIR-DGHDFVGMALDKGAAAALV------THRPEGVADDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V N  K L    S    +    ++ +TG+ GK+S    ++ + Q  G         
Sbjct: 77  PLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKTSTKEMLRTVLQAQGKIHAAEASY 136

Query: 151 STIS----SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +       + A+  + T  + I +    +   +       ++A+                
Sbjct: 137 NNHWGVPLTLARMPQDTEFAIIEIGMNHAGEIAPLAKMAQLDAA---------------- 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   H++   +       K  + E       P I   D      +   A  A  +
Sbjct: 181 -MITTVAPAHLEAFGSVAEIAVEKAAITE---GLNGPLIANRDIETWDVIRDVAAAAETQ 236

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V   G Q     L  V    +   +     G        + G     NAL A  +C A+G
Sbjct: 237 VTWFGAQADAFVLTDVRLADSATVIVAEFNGTPLLIKLSVAGRHFAMNALGAVAVCDAVG 296

Query: 327 IDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD-----YAHTSNSLEMI------- 372
            D A     +       GR   E +  +++     VD     +     S+          
Sbjct: 297 ADIARAAMDMANWLPPAGRGTRETLRLDTQNSDDTVDLYDDAFNANPTSMRASLEVLAAT 356

Query: 373 --LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKI 428
               N+  I  GR I V G   +    +  +   +A D  L  + +V    PR      +
Sbjct: 357 QPRDNVGRIVKGRRIAVLGDMLELGSAEMQMHADMAADPSLPAVTVVHCVGPRMRSLYDV 416

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
             E   G   ++E    +     A  +++  DV++V G KG
Sbjct: 417 LPEGQRG--QWVEIAGELAG--KAHSLIDAGDVILVKGSKG 453


>gi|158834074|gb|ABW81842.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834076|gb|ABW81843.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834078|gb|ABW81844.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834080|gb|ABW81845.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834084|gb|ABW81847.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834086|gb|ABW81848.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
 gi|158834094|gb|ABW81852.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 121/254 (47%), Gaps = 3/254 (1%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N  TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           H     Y  AK  LF +   K     +       +  E+      +    +  G +G ++
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGAWL 125

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +K+    N   +         +   PL G F V N L+     +A+      +L+   
Sbjct: 126 SAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLDALLKAAS 185

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+G
Sbjct: 186 KLQPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKG 244

Query: 398 KRPIMGKIALDLAD 411
           KRP+MGKIA  LAD
Sbjct: 245 KRPLMGKIAETLAD 258


>gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 471

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 129/411 (31%), Gaps = 36/411 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L+ +      + +  +        +  + + V +DSR ++ G +F  I G + DGH F
Sbjct: 3   MNLEQI-----RDALGAVGTL--GGADMTVPSGVQTDSRCVRDGELFFCISGERFDGHTF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
             + + +GA A+V        D     R + P+L+V +T   L   A          +  
Sbjct: 56  AAEVLEKGACAVVAERPPFSMD-EMQDRQDRPVLIVPDTVAALGRLALHHRMGASAVVTG 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK++V   +  +    G ++      +            T               
Sbjct: 115 ITGTAGKTTVKELLAHVLSVRGATARNHLNRNNQIGLPLSMLAATGD------------- 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +EA           G  L       L                       + + 
Sbjct: 162 --ERFWVMEAGISQAADMDELGSVLRPDLAVVLNVGQGHLSGLGDKGVAHYKARLLKHIA 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    ++ AD        ++         +V     +       A   +    + +E ++
Sbjct: 220 RGGVGLVSADYPDLLAEARKNCGELRLFSAVDPAVPYFCEYAGPAGEGRGLYRVRLESRE 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F+   P  G +   N +  A     +G+ SA + E L    +   RF        G  + 
Sbjct: 280 FETEAPFRGAYGAENVIAVAAAAHILGLTSAEIAEGLRTAELPQQRFN---CRRYGRWLV 336

Query: 360 VD--YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +D  Y     S   ++++      G   VVF        G+   +G+ A  
Sbjct: 337 IDDTYNANPLSAGRMVESTAENACGEP-VVFVM------GEMLELGEAAAQ 380


>gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
 gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
          Length = 466

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 142/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q +A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+    +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +    +G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 245 AKSHQIMSFGEGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
 gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
          Length = 478

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 7/153 (4%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L      +  E +   +I   Q  +     V SDSR +  G +FV I G + DGH F 
Sbjct: 1   MQLT---PNEMREALGAGAILGAQG-DATFASVRSDSRKVAPGDLFVCIRGERFDGHDFA 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              + QGA  ++        +  +   ++  I+VV ++ K L   A+    +    ++ V
Sbjct: 57  ADVVRQGARVLIAERDPFNGECPS---ADVTIMVVGDSVKALGRLANLHRMRSKARVVGV 113

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TGT+GK++V   + Q+    G ++      +  
Sbjct: 114 TGTAGKTTVKELLAQVLGVRGDTARNPLNLNNQ 146


>gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
 gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
          Length = 481

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 142/396 (35%), Gaps = 27/396 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR ++ G  F AI G + DGH F   A+A GA  +VV    +     A   + 
Sbjct: 32  VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAMAAGAGLLVV----AEHRLPAFGNTK 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++VV++  + L         +    I+AVTG+ GK++    ++ +    G        
Sbjct: 88  VPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTTTKEALRHVLSDVGKVHASAAS 147

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  + HG  +  +  ++      
Sbjct: 148 FNNHWGV----------PLTLARMPAD---VDYGVFEIGMNHHGEIRPLVKMVRPHVALI 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL- 268
           T +   H+ +    +    AK  +FE  +     A++  DD   +++ + A  AG   + 
Sbjct: 195 TLIAPAHLGHFANLEEIAVAKAEIFEG-IVPGGYALLNRDDKRFRQLQELAEKAGVEHIA 253

Query: 269 -SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L+ V        +T+ +   +      +PG   V N L   G    +G 
Sbjct: 254 TFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLGAAHLVGA 313

Query: 328 DSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMI----LKNIRTIT 380
           D A V+  +  L    GR       +  G    +D  Y     S+          +   +
Sbjct: 314 DIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLHSTVPEGS 373

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            GR I V G   +  +    +   +A  + D  + T
Sbjct: 374 RGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNT 409


>gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. ND132]
 gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans ND132]
          Length = 462

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 133/416 (31%), Gaps = 35/416 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIF-PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M L         E+   L       + E  + EV +DSR ++ G +F  I G   DGH F
Sbjct: 1   MNL------TLAEVARCLGTLADEGFEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEF 54

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
              A A+GA A+V S              + P+++V +TR  L   A+         ++A
Sbjct: 55  AALAAAKGACAVVASR--------MIGEIDAPVIMVRDTRTALGRLAACWRDTCGAKLVA 106

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++V   +  +  +   ++      +            +               
Sbjct: 107 VTGTAGKTTVKEMLFAVASQKFATAKNYRNFNNQIGLPTSMLKASAD------------- 153

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q +  + +  S  G  +             TN+G  H++    +    +AK  L   L  
Sbjct: 154 QELWIMELGISRRGDMEELAPVASPDLAIITNVGPGHLEGLGNEAGVASAKTALLRYLRQ 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I           ++              +  F           + +  +     D
Sbjct: 214 GGRAVISRDYPLLWNAALELVDAPVGFSGRDDAESDFSAAFLGALPDGRGRFRLRTPDGD 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P  G     N    A     +G+    V+  ++ +   P RF        G  + 
Sbjct: 274 GELTAPFCGRHYAENLACVAAAAHCLGLTRDDVVGGVQAMAADPQRF--CRKIGGGITVI 331

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVF----GCGGDRDQGKRPIMGKIALDLA 410
            D Y     S+   L+  R +   R +V+        G     +   +G++  + A
Sbjct: 332 DDTYNANPLSMANALRTARELAGERPLVLVLGDMRELGAEAVLRHEELGRVIRETA 387


>gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
 gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB056]
 gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB058]
 gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB059]
 gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
          Length = 466

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 141/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q +A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+    +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +     G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKTPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
          Length = 504

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 159/496 (32%), Gaps = 53/496 (10%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L  +   E +   ++      +  +   V  DSR I  G IF+A+ G + DGH F   A
Sbjct: 3   ELTTQKIAE-VTGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFADAA 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATI------RSNTPILVVD------NTRKFLSLFASRLYG 111
           +  GA  ++V          A         SN      D           +   A     
Sbjct: 62  LNSGAALLIVGRPVEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARYNTD 121

Query: 112 KHPENI----LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                     + VTG++GK+S    +  + + +G +    G          +N +  P  
Sbjct: 122 VLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGS--------FNNEIGLP-- 171

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL            + A   G  QH         G   N+G  H+    ++QA  
Sbjct: 172 ---YTALRAGRDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIA 228

Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------KFIH 278
            A  ++            A++ ADD     + KR      R  + G  G        +  
Sbjct: 229 QAKGELVEALPAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYAT 288

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE-HLE 337
             ++ A+     +     G+       + G  QV NAL AA + I +GID+A V      
Sbjct: 289 DIELDAVARASFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSS 348

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRI----IVVFGCG- 391
            +     R +     S G  I  D Y     S+   +  +     GR       V G   
Sbjct: 349 HVAASVNRMDVRTRESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQMG 408

Query: 392 --GDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             G+    +   +G + A    D A++        +   +               N   A
Sbjct: 409 ELGEDASDEHAELGHVLAQRRIDHAVIVG---NGVNQRALANAARESGVETQVVENIDGA 465

Query: 449 IRTAIEMLNKQDVLVV 464
           +      LN QDV+++
Sbjct: 466 VNYLDMSLNPQDVVLI 481


>gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Azorhizobium caulinodans ORS 571]
 gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium
           caulinodans ORS 571]
          Length = 476

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 131/390 (33%), Gaps = 31/390 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  +S D+R ++ G  F AI G   DGH ++ +A+  GA   VV++             
Sbjct: 26  DVTGISIDTRTLEPGDAFFAITGENSDGHAYVAKALENGASLAVVAADR------VQGLP 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P++VV +    L+        +    I+AVTG+ GK++    ++      G +     
Sbjct: 80  DGPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVGKTTTKEALRIALSADGETHASAA 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +               P+ LA+              V  +  G     +  ++     
Sbjct: 140 SYNNHWGV----------PLSLARFPRSAR---YGVFEVGMNHPGEITPLVRMVRPHVAV 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   HI      +   +AK  +F+  L     A++  D+     ++  A   G + +
Sbjct: 187 ITTVEAVHIAQFSGIEEIADAKAEIFDG-LEPGGTAVLNRDNPLFDRLVASARAKGVKNI 245

Query: 269 --SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     + LK V        V   V G    F   +PG   V NAL        +G
Sbjct: 246 VSFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALAVLAAVRLLG 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI---T 380
            D AL    L +L   PGR   V  +  GG   +    Y     S+   +  +       
Sbjct: 306 GDLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAIDVLSRTPVGP 365

Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGKIAL 407
            GR I V G     G         + +   
Sbjct: 366 RGRRIAVLGDMLELGTEGAQHHRELAEALE 395


>gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
          Length = 464

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 150/401 (37%), Gaps = 22/401 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +    LI   +   +   +  I+ VS+D+R++  G ++VA+ G + DGH F   A A+G
Sbjct: 2   KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQARG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V            +    P ++V ++   L+  A+ +       + A+TG++GK+
Sbjct: 62  ASALLVER---------LLPIELPQVLVADSELALAKIATGMQRDRDTEVFAITGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SV S +  I Q+    + +       +   ++N +  P  +  A   +  +        +
Sbjct: 113 SVKSLLLSILQQVARHAHK---VVYANPGNRNNEIGLPLAVIDAPEDADYA-----VYEM 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A   G   +  D  +       N+   H++   +               LP +  A+I 
Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSL-LGVAVTKGAIYAALPADGVAVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDAY +   +       R   + Y       +  + + A     Q T+     +   + 
Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADVTARDIRAGAQGSQFTLVSPMGEARVVL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V NAL AA L +A GI+ ALV   L     VPGR +       G  +  D  +
Sbjct: 284 GLPGRHNVSNALAAASLALAAGIELALVAAGLADAQPVPGR-QIAHQLHNGAVLVDDSYN 342

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            +        +          +V G   +       +  + 
Sbjct: 343 ANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQA 383


>gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct]
          Length = 487

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 148/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 44  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 97

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 98  ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 152

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 153 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 199

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 200 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 257

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +    A  N     I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 258 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 317

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++      +I
Sbjct: 318 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 377

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 378 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 411


>gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
 gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
          Length = 454

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/486 (15%), Positives = 148/486 (30%), Gaps = 65/486 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL       F E+ + +       Q+ +  I+ +  DSR I +G +F+ + G + DGH 
Sbjct: 1   MKLS------FHEIADVVGALNDVSQFEDSPIHSIEFDSRKIASGDLFLPLKGTR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A   GA A           FS     + P ++V +        A     K   +++
Sbjct: 54  FIPTAFENGAVA----------TFSRIELDDVPYILVKDPLAAFQTLAKYYLEKMAVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +       G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMIHDVLATTYKIYKTQGN-YNNEIGLPYTVLHMPDSTQKLVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   +  + +   +    L G                      +A+        +   
Sbjct: 163 HLGDIDLLSKIAQPKIGIVTLIG----------------------EAHLEFFGSREKIAQ 200

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-GYQGKFIHLKKVCAIHNKQQVTISVEG 297
            K   A   A D        +  N            G    +     +  K  ++ +V  
Sbjct: 201 GKMQIANGMAKDGTLIVPADKIINDYLPDNQKVVRFGPDQDIFLTELVERKDSLSFAVNF 260

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D     P+ G++   NA++A  +    G+    +   L+ L +   R E+   ++    
Sbjct: 261 MDGLIELPVTGKYNATNAMLATYVGQLEGVADEAIRSALKNLVLTKNRTEWKKASNGADI 320

Query: 358 IYVDYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIAL-DLA 410
           +   Y     +++        +     G+ I +     +  +        M +    +  
Sbjct: 321 LADVYNANPTAMKLILETFLTLPANEGGKKIALLADMKELGKDSVQMHSQMIRALNPEDL 380

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           D  I        ED  ++                    E+    + ++    +L   D +
Sbjct: 381 DTLIC-----YGEDIAELAQLASQVFPMGKVYYFKKTAEEDQFADLVKQVQTILQPADQI 435

Query: 463 VVAGKG 468
           ++  KG
Sbjct: 436 LL--KG 439


>gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 434

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 140/406 (34%), Gaps = 33/406 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I+ G IF A+ G+  +G+ +   A+ QGA   VV            + +    
Sbjct: 16  VSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDPA--------LATQDRC 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +VVD+    L   A     +    I+A+TG++GK++    +  +        +  G  + 
Sbjct: 68  IVVDDVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAVLGSQYPMHYTQGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L +         V  + + A+  G         +   G  TN+
Sbjct: 128 H----------IGVPLTLLQ---LDFRLEVAVIEMGANHQGEIDQLCRIAEPTHGLITNI 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSV 270
           G+ H++     +     K  L+  L   +  A +  D+ +  E+    R      R    
Sbjct: 175 GKAHLEGFGGIEGVKKGKSELYRYLAETDGLAFVNNDEPFLVELSSGVRKRIFYERSDDP 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               K   +  +      +   +    +  +    L GE    N   A  L     +   
Sbjct: 235 APNHKPYEVVLLQLQPFIRVAFLDENNQLIEAGSKLMGEHNFQNIKTAVTLGKYFKVPGK 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   +E  +    R ++V        +   Y    +S+E+ L++     + + I + G 
Sbjct: 295 KIKAAIENYNPNMNRSQWVSWG-TNSILLDAYNANPSSMEVTLRSFSESPASQRIAILGD 353

Query: 391 G---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEI 432
               G+    +   + ++A  L  +  I+       +    I  ++
Sbjct: 354 MFELGESSAVEHERVAQLAQSLNFEQVILV-----GQHFAAIARQL 394


>gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4]
 gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei
           5_1_36/D4]
          Length = 432

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 134/374 (35%), Gaps = 22/374 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV       D          I
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPR------I 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G  + 
Sbjct: 70  LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      TP                +  + + A+  G  +     ++   G  TN+
Sbjct: 130 HIGVPLTLLRLTPE-------------HELAVIEMGANHPGEIKALTCIVEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L+E L       I    D  ++ +   +         +  
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFI--DKDNEYLTAISQGLTRICYGMEG 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   K+ A           EG+ F+    L G + + NAL A  +     + S  +
Sbjct: 235 GEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E LE       R +     +    I   Y     S+   L+N R +     +V+ G   
Sbjct: 295 CEALEAYVPHNNRSQLT-ETTDNKLIVDAYNANPTSMMAALENFRLMNVAHKMVILGDMK 353

Query: 393 DRDQGKRPIMGKIA 406
           +  +       KIA
Sbjct: 354 ELGETSHEEHQKIA 367


>gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 503

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 154/397 (38%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G +++A+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYIALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A+GA  ++V               + P +VV+N    L+  A+ +       +LA+
Sbjct: 55  ADAVARGASGLLVGR--------LLPALSVPQVVVENAELALARVAAGMQRDRATRVLAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I Q +G      G T   +   ++N +  P  +  A   +  +  
Sbjct: 107 TGSNGKTSVKALLLSILQEAG---RVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++      +   +   G  I      +++       Q T+   
Sbjct: 218 DGVAVINADDAFGMWFEQQLLAQPVQGRRILRYGLHISADITARQLQLQAGAAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLP    V NAL A GL +  GI   ++   L + H V GR +   T   G 
Sbjct: 278 QGEAQVALPLPARHNVLNALAATGLALGAGIALPVIAAGLAQAHPVAGR-QIAQTLPSGA 336

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +  D  + +        +      G   +V G   +
Sbjct: 337 VLIDDSYNANPGSLDAAIDALAAAPGDGWLVLGDMRE 373


>gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
 gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
          Length = 475

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 141/402 (35%), Gaps = 27/402 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
                VS+DSR    G +FVAI G++ D H F+P   A+   A++++             
Sbjct: 29  VTFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVAARNVTAVLITR--------TPQD 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P L V +TR  L   A     K    ++AVTG++GK++V   +  I   +  +  ++
Sbjct: 81  WTVPALKVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTTVKEMIASIFAAAVGADARL 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 ++           P+ L       ++  +  V +  +  G         +    
Sbjct: 141 ATAGNFNNDI-------GLPLTLF---RLHAAHQLAVVELGMNHPGETLELAKIAEPTVA 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++  T +A            L  E  A+  ADDAY+      A  +    
Sbjct: 191 VVNNAQREHQEFMATVEAVALEHA-SVIHALTPEGVAVFPADDAYASIWRVAATGSRIMD 249

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            ++    +      V        ++I       +    + G+   +NAL A    +A G+
Sbjct: 250 FALNSAERITEA-AVKGTFAGNVLSIDTPEGQIEVTLQVLGDHNAHNALAATSAALAAGV 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
               +   LE    V GR +          G  +  D Y    +S+   +  + +  + R
Sbjct: 309 SLDAIKRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAIDVLASRAAPR 368

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
           ++V+   G  GD        +G  A     D      D  R 
Sbjct: 369 VLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRD 410


>gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 458

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/469 (17%), Positives = 165/469 (35%), Gaps = 40/469 (8%)

Query: 11  FPELINQLSIFPMQWRE---RKINEVSSDSR-HIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             EL+ +     +   +     I E+ +DSR  +  G +FV ++G K DGH +I    A 
Sbjct: 5   IQELVQETGGICLNSEDSGNTVIEEIFTDSRQKVNKG-LFVPLIGEKFDGHDYIDDVKAM 63

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A + S              +   + V++T+K L   A     K    I+A+TG+ GK
Sbjct: 64  GALATLTSKKNDSVH------QDLITIAVEDTQKALLDVARYYSSKVDRPIIAITGSVGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    V  + + +      +G          +N +  P         +      V+ + 
Sbjct: 118 TTTKEMVAAVLETTLKVHKTVGN--------YNNEIGVPK-----TMFALSEDDQVSVIE 164

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  +  G        +K      TN+G  HI++ ++++    AK+ + E L P+ +  I 
Sbjct: 165 MGMNHFGELSRLTSVVKPDFAVITNIGTAHIEHLESREGILKAKLEILEGLKPEGTVII- 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D       K+ +     +           +  V       +  +      F    P 
Sbjct: 224 -NGDEPLLMGKKQDNW----ITFGFDPRLDYCVSNVVTYGVFTEAVVYTPNSVFKIKIPS 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAH 364
           PG     NAL+A  +   + I    +++ +        R       + G    +D  Y  
Sbjct: 279 PGVHMALNALIAIIIAEKLEIPRDKIIKGIANYKSEKMRMNIT---NVGNFTVIDDTYNA 335

Query: 365 TSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             +S+   +K +    T  R I + G     G   +     +G+         + T  + 
Sbjct: 336 NYDSMVAAMKVLGNYLTKNRKIAILGDIFELGKYSESIHRNLGEYIASSRINCVFTIGDA 395

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            +   + I     +         N+   I+   + +N  D+++V A +G
Sbjct: 396 AAYITDAIINSPNNKNVTSKHFKNKELFIKEWSQYINAGDIVLVKASRG 444


>gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 457

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 145/382 (37%), Gaps = 23/382 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+   L+   +   +  I+E++ +S  I    +F+A++G + DGH F  QAIA
Sbjct: 1   MIPFSLHEIAPVLNAKYIG-MDLIIHEITINSNIIHKQCMFIALIGKRFDGHDFTSQAIA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+A++V+           I  + P L+V +TR  L + A  +  K    ++A+TG+SG
Sbjct: 60  AGAQALLVNH---------HILLDVPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I +  G +    G  + +             PI L              +
Sbjct: 111 KTSVKEMTTSILKECGHTIATQGNFNNM----------IGVPITLL---RLTKKNNFAII 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  SS G        +        N+   H+   ++       K ++F EL    +  I
Sbjct: 158 ELGTSSPGELVQLSKIVAANVALVNNVYPAHLSGFKSLSKIGKEKGKIFSELDLNGTGII 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                A S         +          G       + +  N+ +  +         +  
Sbjct: 218 NADSHALSLWRKPLKGKSMWFFSLRTNVGIDFFASNIISEKNRIRFILHTPYGTSPVVLS 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   V NAL A+ L  ++G + + V+  LE +  +PGR   +        +   Y   
Sbjct: 278 MLGTHNVANALAASALAFSVGANLSEVVYGLENIKTLPGRLFPIILGEGKLLLDDTYNSN 337

Query: 366 SNSLEMILKNIRTITSGRIIVV 387
             S+   +  + T+   RI+VV
Sbjct: 338 VGSMISAIHVLTTMPGYRILVV 359


>gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
 gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
          Length = 449

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 146/427 (34%), Gaps = 33/427 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNKLGM-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A          K   A+I AD     +++          +  
Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKKLSITDIHS 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             +      + +   +  +QV +      K  D + P        N      +   +G D
Sbjct: 241 FGRSAKTSAELILYENLGEQVYLKYKINKKVLDVMIPFIPRHFTENYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +   HL  +    GR E +   +        Y  +  S++  L+ ++ + +     + 
Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359

Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440
           G     G+  +     + + I         +   N +  +   P KI  +    +   I 
Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELIT 419

Query: 441 EKGNRIE 447
              +  E
Sbjct: 420 HITDLFE 426


>gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
 gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
          Length = 477

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 91/468 (19%), Positives = 163/468 (34%), Gaps = 38/468 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA 
Sbjct: 6   TCSDLLAAMNGRPVGNLPEGIIGISIDSRTIAKGEAFFAIRGDRVDGHDYAGIALANGAS 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VVS         A  R   P++VVD+  + +         +    ++AVTG+ GK++ 
Sbjct: 66  LLVVSEG----KLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ +    G     I   +               P+ LA       +       +  
Sbjct: 122 KEMLRHVLSPLGRVHASIASFNNHWGV----------PLTLA---RMPETTEFGIFEIGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           + HG  +     ++      T++   H+    +      AK  +FE ++      I    
Sbjct: 169 NHHGEIRPLTAMVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVI--NR 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKF---IHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           D+   E+++RA  A        +         L +         +   + G+  +     
Sbjct: 227 DSPQFELLERAAVAAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIGGRTREVTIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYA 363
           PG     NAL         G D   VL  L  +    GR         GG + +    Y 
Sbjct: 287 PGRHIAENALAVVAAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYN 346

Query: 364 HTSNSLEMIL---KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
               S+   +   +       GR I + G   +  +    +   +A  + +  I TD   
Sbjct: 347 ANPASMRAAISLLRAAEPPAGGRRIAILGDMLEMGEHAAAVHAALAEPIVEAGI-TDVWL 405

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAI----RTAIEMLNKQDVLVV 464
              D   +R  +    PG +   +R EA+      A+  +   DV++V
Sbjct: 406 AGPDIAHLRDAL----PGEVSVVHR-EAVGDLTSYALGAVAAGDVVMV 448


>gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 446

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 141/443 (31%), Gaps = 50/443 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +  DSR ++ G +F+A+ G + DG+ FI  A+ +GA   V + +            N  +
Sbjct: 21  IRIDSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNRS----------SDNPAV 70

Query: 93  LVVDNTRKFLSLFASRLYGKHPENI-LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
               + +K L   A+ +         +A+TG++GK++    +  I    G      G  +
Sbjct: 71  FFHPDPKKLLIEAAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYGKVFKTPGNLN 130

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T              PI + +  S L+           S  G      D +        N
Sbjct: 131 TEIGI----------PIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLLN 180

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H      +            E L K+S AI   DD   + ++              
Sbjct: 181 VGTAHRGNFNDETELLQE-KCSIFETLQKDSTAITNGDDKRIRSMISELSCKKL------ 233

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA- 330
           + G+     K+      +  T        +              L+  G      +    
Sbjct: 234 FFGQRNGDLKIMKFDYSKNNTFVAFKAFGEMKMAKLKGIWNSGQLLDFGAAYLTALSLKI 293

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFG 389
                     ++P    F   N  G  +  D Y  +  S+E  +K+I  +   R   V G
Sbjct: 294 EEPLLNINRIILPFNNRFSVENIAGIILINDCYNSSLESVESAIKSIAKLKKERTFAVVG 353

Query: 390 ---CGGDRDQGKRPIMGKIALDLADIAIV-TDD------------NPRSEDPEKIRAEII 433
                G   +     +G++     D  ++ T D            + +S +PE++   + 
Sbjct: 354 SILEQGKYSKKTHEELGRLLN-FFDHIVLYTKDTQVEAVQNTANIDFKSSNPEEVAEWLK 412

Query: 434 HGI---PGFIEKGNRIEAIRTAI 453
                      K +R  A+  AI
Sbjct: 413 KNCRYGDLVYFKASRGVALEEAI 435


>gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 86/470 (18%), Positives = 148/470 (31%), Gaps = 41/470 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I      +   +           +      D R  + G +FVA  G   DGH +  QA 
Sbjct: 1   MIPLSLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQAG 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
             GA A++ S   +            P +VV++ R  L   A+ +  +  E   ++ VTG
Sbjct: 61  QAGAVAVLGSRPTA-----------LPTVVVEDARTALQALAADVVARLRERLTLVGVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +   +  +    G          +N L  P        L   ++   
Sbjct: 110 SQGKTSTKDLLAAVLSSAAPTIATKGNL--------NNELGVP-----LTMLRAGAATRF 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V + A   G      D + L      N+G  H+    ++ A            L    
Sbjct: 157 LVVEMGARRIGDLAKLTDLVPLDVAVVLNVGEAHLGVFGSRAAIA-EGKGELVRGLVPGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+ ADD     +                    +    +  +  +   T+         
Sbjct: 216 TAILNADDPRVVAMRSLTDGPVLTFGHAEDADVRVRDLTLDRLG-RPSFTLRTADATARV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G  Q  NA  A    ++ G+        L    +   R E          +   Y
Sbjct: 275 KLPIVGAHQALNAAAAVAAALSAGLTLDAAAAPLATASLTRWRLELRDIAGGVTLLNDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  S    L  +  I  GR + V G     GD  + +   +G+ A   AD  +VT   
Sbjct: 335 NASPGSTRAALDALAAIEGGRRVAVLGQMLELGDESEAEHRAVGEYAAARAD-VVVTV-- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              E    +   +  G    +   +   A+      L   DV++V A +G
Sbjct: 392 --GEAVRPLA--VGAG-ERAVAVADNGAAVDWLRGHLAPGDVVLVKASRG 436


>gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 456

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 142/424 (33%), Gaps = 48/424 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+    +      ++ +  +N++  DSR I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEIAKVVEAQNSLSEFDDVPLNQIEFDSRKIVKGDLFLPLKGER-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A  +GA A                    P L+V++        A     K   +++
Sbjct: 54  FIELAFEKGAAATFSEHPIE----------GKPYLLVNDCLHAYQTLAKYYIEKMRLDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK+S    ++ +   +  +    G             L  P             
Sbjct: 104 AVTGSNGKTSTKDMIEAVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDETEKVVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H+  E     + Q R+  + ++A +                    A+ ++     
Sbjct: 163 HMGDIHLLSE-----IAQPRIAVLTIVAEAHLEFFGSREK---------IAQGKMQIVDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D      +                G+   +       +K  +T +    
Sbjct: 209 MDSHGILLAPGDPIIDPYLPDNQMVI-------RFGEGEEIFVKDIKEDKNSLTFTTNVL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     PL G++   NA++AA +   + +    ++E LE + +   R E+    +    +
Sbjct: 262 DQAVTLPLSGKYNATNAMIAAYVGKLLAVSDEDIVEALESVQLTKNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I +   G+ I V     +       +  K+ + L+    D
Sbjct: 322 SDVYNANPTAMQLILETFSNIPNNPDGKKIAVLADMKELGPDSVSLHSKLIMSLSPEKID 381

Query: 412 IAIV 415
             I 
Sbjct: 382 TLIF 385


>gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
 gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
          Length = 465

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 151/416 (36%), Gaps = 34/416 (8%)

Query: 7   IYKDFPELINQLSIFPMQWRERK---INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +    PE + + +             I  + +DSRH + G +F+A+ G + D H F+ Q 
Sbjct: 11  LEPWTPEQLQEATQGEWLHGNIPQGAIKRILTDSRHAEVGDVFLALKGERFDAHDFVAQV 70

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
             QG +  +V     +         +   LVV +TR  L    +    ++    ++A+TG
Sbjct: 71  ATQGCQIAIVEHPIDV---------DIAQLVVKDTRLALGDLGAYRRKQNAHLKVIALTG 121

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    +  I  R   +    G  +          L  P        L        
Sbjct: 122 SSGKTTTKEMLGSILSRLAPTLITRGNLNND--------LGVP-----MMLLELRKEHQY 168

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + AS  G   +  + ++       N+G  H+     ++    AK  ++  +LP+  
Sbjct: 169 AVMELGASHQGEIDYTSNLVQPHVAGILNIGTAHLGEFGGREGICRAKSEIYAHILPQGV 228

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +  ADD          ++A         QG  ++  ++       +  +         
Sbjct: 229 AIVPAADD----FTADIRNSAQAHSNLSFGQGGDVYATEIELKPQSVRFNLHTPQGQRVV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  GE  V NA  A    +AIGI+   ++E LE+     GR  F+   +    I   Y
Sbjct: 285 NLPFAGEHNVQNATAATAFALAIGIELDDIVEGLEQAQGAKGRLNFIQHQNH-LFIDDTY 343

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAIV 415
                S+    + +      +++V+   G  GD    +   +G+    LA D  +V
Sbjct: 344 NANPTSMRAAAQVLLQQQGLKVMVMGDIGELGDSSWQEHHDLGRDLAALALDQIVV 399


>gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
 gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
          Length = 449

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 144/427 (33%), Gaps = 33/427 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA A+++S    + D         
Sbjct: 23  NEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDAIDKGAAAVIISKRVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKVLLQHDFLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +       +                           +  +  G  +  +  +K      T
Sbjct: 135 NNKLGMFINLASMADD-------------TEYAIFELGMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A          K   A+I AD     +++          +  
Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFANFSKNDIAVINADTNCYNKILSILKKLSITDIHS 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             +      + +   +  +QV +      K  D   P        N      +   +G D
Sbjct: 241 FGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +   HL  +    GR E +   +        Y  +  S++  L+ ++ + +     + 
Sbjct: 301 IEIAANHLANISPTKGRGEIINIQNCRVICDY-YNASPQSMKAALEYLKQVPAENKTAII 359

Query: 389 GCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED---PEKIRAEIIHGIPGFI- 440
           G     G+  +     + + I         +   N +  +   P KI  +    +   I 
Sbjct: 360 GDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPSKIAKKYFKNVDELIT 419

Query: 441 EKGNRIE 447
              +  E
Sbjct: 420 HITDLFE 426


>gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine
           bacterium HP15]
          Length = 462

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 89/454 (19%), Positives = 161/454 (35%), Gaps = 46/454 (10%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
                    VS+D+R ++ G +FVA+ G   DGH F+ QA+ +GA  +VV +        
Sbjct: 22  DLASVSFAGVSTDTRTLEPGQLFVALRGENFDGHRFLQQAMDKGAVGLVVDTP------- 74

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P LVV+ T + L+  A+    +    ILA+TG+SGK++V      I  + G +
Sbjct: 75  -DTNLALPQLVVNETLEALARLAAANREESTAAILAITGSSGKTTVKEMCAAILSQMGKT 133

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +            +P                   + + AS  G   H +   K
Sbjct: 134 LSTKGNLNNHIGVPLTLFGLSPE-------------HQYGVIELGASGLGEIAHTVALAK 180

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN G  H++   + +    AK  + + +       +   D A+++   +     
Sbjct: 181 PRVAILTNAGEAHLEGFGSYENIVLAKGEIIDGVASDGLMVLNGDDPAFAQWRSRAGARR 240

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              V  +G +  +  +        +       +G        L G+  + N L+A     
Sbjct: 241 VAGVSRLGAEADYHAVIDGQDAGTRTFQVSGPDGWLCRVTLGLEGDHNITNMLLAIAATR 300

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G     ++  L  +  V GR + +  +     I   Y    +S++  L  +    +G+
Sbjct: 301 ELGASDQAIVAGLASVAPVKGRLQVLELSPEMTLIDDSYNANPSSMKAALGVLAG-RAGQ 359

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            I V G     G +       +G  A +     ++T   P  E           G     
Sbjct: 360 KIAVLGAMAELGAKANALHREVGVCAREHGIDRLITV-GPGCEGYAD-------GFGEST 411

Query: 441 EKG-NRIEAIRTAIEMLNKQD-----VLVVAGKG 468
           E G +  +A+ +AI      D      ++V  KG
Sbjct: 412 ELGLSHEQAVESAI-----GDKNTPLTVLV--KG 438


>gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 144

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 6/138 (4%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS 75
           N   IF    R+  I E++ DSR+++ G +F+A+ G K DG   I  A+ +GA A+    
Sbjct: 4   NLSKIFAHTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAV---- 59

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
           AY ++  +    ++ P++ V      LS  A R YG      N++ VTGT+GK+SV   V
Sbjct: 60  AYEVEGSTVLPITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLV 119

Query: 134 QQICQRSGLSSFQIGPTS 151
            Q     G     +G   
Sbjct: 120 AQALDALGQHCGIVGTLG 137


>gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 86/470 (18%), Positives = 148/470 (31%), Gaps = 41/470 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I      +   +           +      D R  + G +FVA  G   DGH +  QA 
Sbjct: 1   MIPLSLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQAG 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
             GA A++ S   +            P +VV++ R  L   A+ +  +  E   ++ VTG
Sbjct: 61  QAGAVAVLGSRPTA-----------LPTVVVEDARTALQALAADVVARLRERLTLVGVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +   +  +    G          +N L  P        L   ++   
Sbjct: 110 SQGKTSTKDLLAAVLSSAAPTIATKGNL--------NNELGVP-----LTMLRAGAATRF 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V + A   G      D + L      N+G  H+    ++ A            L    
Sbjct: 157 LVVEMGARRIGDLAKLTDLVPLDVAVVLNVGEAHLGVFGSRAAIA-EGKGELVRGLVPGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+ ADD     +                    +    +  +  +   T+         
Sbjct: 216 TAILNADDPRVVAMRSLTDGPVLTFGHAEDADVRVRDLTLDRLG-RPSFTLRTADATARV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G  Q  NA  A    ++ G+        L    +   R E          +   Y
Sbjct: 275 KLPIVGAHQALNAAAAVAAALSAGLTLDAAAATLATASLTRWRLELRDIAGGVTLLNDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             +  S    L  +  I  GR + V G     GD  + +   +G+ A   AD  +VT   
Sbjct: 335 NASPGSTRAALDALAAIEGGRRVAVLGQMLELGDESEAEHRAVGEYAAARAD-VVVTV-- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              E    +   +  G    +   +   A+      L   DV++V A +G
Sbjct: 392 --GEAVRPLA--VGAG-ERAVAVADNGAAVDWLRGHLAPGDVVLVKASRG 436


>gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
 gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
          Length = 460

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 145/413 (35%), Gaps = 37/413 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L      ELI           +  I  VS+D+R+I +  +F+A+ G + D H F  
Sbjct: 5   QLSQLASVLNAELIG---------ADVSIAAVSTDTRNIPSETLFIALKGERFDAHDFCQ 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI---- 117
            A   GA+A++VS    ++          P LVV +TR  L +  + L  +  E      
Sbjct: 56  TAKENGAKALLVSKPLPVE---------LPQLVVSDTRIALGMMGAWLKAQMTEKYGLQT 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK++V      I    G      G  +            TP            
Sbjct: 107 VALTGSCGKTTVKEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPE----------- 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + A+      +  + +K       N+   H++   + Q    AK  +FE L
Sbjct: 156 --YQYAVIELGANHQNEISYTTNLVKPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +   +  I    +  +      A +      +  +Q  +   +           T+    
Sbjct: 214 VQNGTAIINLESNDLALWQPLLADHQVLTFSTDSHQADYFAEEIKITTQGLACFTMCTPI 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    L G   V NAL AA L +++G   A V   LE +  V GR +     +    
Sbjct: 274 GKIDINLALAGIHNVSNALAAAALTVSLGATLADVKAGLETMANVKGRLDITEPCAGLRL 333

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
           I   Y  +  +++  +  + +    R  +       G+        +G+ A +
Sbjct: 334 IDDTYNASVAAVKAAIDVLASFEGKRYFIFGDMAELGEESDNLHREVGEYAQE 386


>gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 509

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 76/497 (15%), Positives = 146/497 (29%), Gaps = 62/497 (12%)

Query: 14  LINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
            I   S+  +   + ++   V  DSR +  G +FVA+ G + DGH F  +AI QGA A++
Sbjct: 11  AITGGSLDGVDDPDERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAEKAIEQGAVAVL 70

Query: 73  VSSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFASRLYGKHPENI-- 117
            +    +       +           +  ++           LS  A  +  +       
Sbjct: 71  AARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSDLAREVTSRLAAEQGL 130

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + VTG++GK+S    +  I +  G +    G  +                     AL 
Sbjct: 131 DIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPY-------------TALR 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRL 233
                      + A   G  +H  +      G   N+G  H+    +++    A  ++  
Sbjct: 178 CDEHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIE 237

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH----NAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                     A++ ADD +   +  R                    +    ++  +    
Sbjct: 238 ALPAAADGGVAVLNADDPFVSSMAPRTQAKVVYYSANRPQAADAQYYATDIELDDVARPS 297

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEF 348
               +   +       + G+ QV NAL AA   I  G++ A+V             R + 
Sbjct: 298 FTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPAVVARALSGHQTSSAHRMDV 357

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGD---RDQGKRPI 401
                    I   Y    +S+   +             R I V G  G+          I
Sbjct: 358 RTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVEAHRI 417

Query: 402 MGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLN 457
           +G +      D  +   +   +     +               +      A+   + +  
Sbjct: 418 LGSVLSKYHVDYLVAVGEGAHT---VAMVEAAHAHGIQTELCPDIEAATAAVENILRVAP 474

Query: 458 KQ----------DVLVV 464
                       DV++V
Sbjct: 475 AGVEDWSARAAKDVVLV 491


>gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
 gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
          Length = 448

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 152/472 (32%), Gaps = 54/472 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ  + +    L  Q    P     +++  V++D+R ++   IF+A  G   DGH F 
Sbjct: 1   MTLQAPLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFA 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ QGA A +V                TP LVV +T             +    I+A+
Sbjct: 61  ESAVQQGAIAAIVDHPIDAA---------TPQLVVPDTLVAYQRLGQWWRQQFQIPIIAI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +          S  +G   ++     +       P  L    +     
Sbjct: 112 TGSVGKTTTKELI----------SAVLGTAGSVLKTEANYNNEIGVPKTLLGLTAD---H 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V +     G         +   G  TN+G  HI    +++A   A        +P 
Sbjct: 159 DYAVVEMGMRGPGEIAELSQIAQPTIGVITNVGTAHIGRLGSREAIAQA-KCELLAQMPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ES A++ AD++   E  +   +       +        L                +  D 
Sbjct: 218 ESLAVLNADNSLLIETAQTVWSGAQVTYGLDSGDLQGQLADQTL-----------QVADH 266

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PLPG     N L A  +   + +D A +      L +  GR   +   +    +  
Sbjct: 267 SFPLPLPGAHNALNYLAALAIAQHLHLDLAPLQ-QGISLELPSGRARKLTLPNDVVVLDE 325

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416
            Y     S++  L  +      R I V G     G+        +G++   L  D  ++ 
Sbjct: 326 TYNAGLESMQAALHLLAQTPGERRIAVLGPMKELGEYAAELHRQVGRLVQTLNIDQLLIL 385

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLV 463
           D  P           +  G            A   A+     + +   D L+
Sbjct: 386 DQGPEG-------TALAAG---TTTVPTEQFAEHQALMDYLDQHIQPGDRLL 427


>gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
 gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
          Length = 468

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 143/395 (36%), Gaps = 35/395 (8%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  I  + +DSRH +AG  F+A+ G + D H F+ Q + QG +  +V     +      
Sbjct: 33  PEGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVVQQGCQVAIVEQPLDV------ 86

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   L+V +TR  L    +    ++P+  ++A+TG+SGK++    +  I  R   + 
Sbjct: 87  ---DIFQLIVSDTRLALGALGAYRRQQYPKLQVIALTGSSGKTTTKEMLGSILSRLAPTL 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +             P                   + + AS  G   +    ++ 
Sbjct: 144 VTRGNLNNDLGVPMMLLELRPE-------------HQYAVMELGASHQGEIDYTSKLVQP 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H+     +     A      + +  +  AI+ ADD ++ ++ +      
Sbjct: 191 HVAGILNIGTAHLGEFGGRDGICRA-KSEIYQHIAVDGTAILPADDDFTDQIKQAIQTQK 249

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +    Q   I+   V       +  +           P  GE  V NAL A    +A
Sbjct: 250 ---MLSFGQDGEIYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEHNVQNALAATAFALA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG 382
           IGID   +++ L       GR  F      G  +++D  Y     S+      +   T  
Sbjct: 307 IGIDLNNIVQGLSAAQGAKGRLNF---IQHGHHLFIDDTYNANPGSMRAAAGVLAQQTGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGK-IALDLADIAI 414
           +++V    G  GD    +   +G  +A +  D  +
Sbjct: 364 KVMVTGDIGELGDASMLEHTQLGHDLANEQLDYIV 398


>gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 318

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 11/125 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS              + 
Sbjct: 27  SNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAIAAIVSE---------GKYKSF 77

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++V +T K L   AS           ++AVTG+ GK++    +  +  + G+S    G
Sbjct: 78  PLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEG 137

Query: 149 PTSTI 153
             +  
Sbjct: 138 NLNNN 142


>gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 455

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 139/426 (32%), Gaps = 44/426 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  +N++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFENGAVATFSEKEL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G             L  P               
Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQDHM 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E +   +    L G   +    +                  A+ ++       
Sbjct: 165 GDIHLLSEIARPRIAVLTLVGEAHLEYFGS--------------RDKIAQGKMQIVDGMD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  +I   D+     +                G +  L        K  +T +      
Sbjct: 211 SNGILIAPGDSIIDPYLPENQMVI-------RFGDYQELNVTDIREEKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++E LE + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +       +  ++   L+    D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383

Query: 414 IVTDDN 419
           +   D+
Sbjct: 384 VFYGDD 389


>gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 454

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 138/396 (34%), Gaps = 40/396 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL   +Y+     + +      ++ +  + ++  DSR I+ G +F+ + G + DGH FI
Sbjct: 1   MKLS--LYEVAK--VVEAQNIISEFDDVPLKQIEFDSRKIEKGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A   GA A                 S  P L+V +  K     A     K   +++AV
Sbjct: 56  DKAFESGAVATFSEKEI----------SGHPYLLVKDCLKAFQKLAKYYIEKMRLDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    ++ +   +  +    G             L  P               
Sbjct: 106 TGSNGKTSTKDMIEAVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKIVLEMGQDHL 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E +   +    L G              H+++  +++    A+ ++       
Sbjct: 165 GDIHLLSEIAQPHIAVVTLIG------------EAHLEFFGSREKI--AQGKMQITDGMN 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G+   +       +K  ++ +    + 
Sbjct: 211 SHGILIAPGDPIIDPYLPENQMVI-------RFGENQEIFVKSIEESKNSLSFTTNVLNQ 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G++   NA++AA +   + +    ++E LE + +   R E+   ++    +  
Sbjct: 264 ALTLPLSGKYNATNAMLAAYVGKLLAVADEDIIEALEHVQLTRNRTEWKKASNGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGD 393
            Y     ++ +IL+    I     G+ I +     +
Sbjct: 324 VYNANPTAMRLILETFTQIAPNQDGQKIALLADMKE 359


>gi|158834082|gb|ABW81846.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 121/254 (47%), Gaps = 3/254 (1%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           N  TT S I + + LS + +   T  ++E SSH L QHR+  +   A  F+NL RDH+DY
Sbjct: 6   NENTTASAIEIQQILSNMLTHKATFAAMEVSSHALVQHRVAALPFAASVFSNLSRDHLDY 65

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           H     Y  AK  LF +   K     +       +  E+      +    +  G +G ++
Sbjct: 66  HGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVAVSTSHQIPSGLKGAWL 125

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +K+    N   +         +   PL G F V N L+     +A+      +L+   
Sbjct: 126 SAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLATLLALKYPLNALLKAAS 185

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           KL  +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+G
Sbjct: 186 KLQPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKG 244

Query: 398 KRPIMGKIALDLAD 411
           KRP+MGKIA  LAD
Sbjct: 245 KRPLMGKIAETLAD 258


>gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 455

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 139/426 (32%), Gaps = 44/426 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  +N++  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNI-SDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFENGAVATFSEKEL----------PGKPHLLVNDCLKAFQTLAQYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G             L  P               
Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQDHM 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E +   +    L G   +    +                  A+ ++       
Sbjct: 165 GDIHLLSEIARPRIAVLTLVGEAHLEYFGS--------------RDKIAQGKMQIVDGMD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  +I   D+     +                G +  L        K  +T +      
Sbjct: 211 SNGILIAPGDSIIDPYLPENQMVI-------RFGDYQELNVTDIREEKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++E LE + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +       +  ++   L+    D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383

Query: 414 IVTDDN 419
           +   D+
Sbjct: 384 VFYGDD 389


>gi|315607153|ref|ZP_07882157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
 gi|315251207|gb|EFU31192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
          Length = 439

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 122/383 (31%), Gaps = 25/383 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF A+ G   DG+ F   A+ +G    V+      ++       N  +
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEG------NGRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN        A     +     + V G +G +   +  + I    G     +     
Sbjct: 70  ILVDNVLTTFKELAREHRRRFD---IPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGN 126

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++     +             S      +  V + AS  G  +  +D ++   G  TN+
Sbjct: 127 FNNDVGVPK----------TLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +    E+  + +           
Sbjct: 177 GRAHLQGFGSFEGVKRTKGELYDFLESHDGLLFLNESNPDLMEMAAQRNFGRIISYGRDE 236

Query: 273 QGK-----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G            +     +      +    ++    L G + + N L A  + +  G+
Sbjct: 237 GGNVEGEVIDCSPFLNFRWRQHLHAGQIPANAYEVETHLIGAYNLDNMLAAIAVGLHFGV 296

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +   L        R +   T      I   Y    +S+   + N + + + R + +
Sbjct: 297 SPAQINHALGHYIPSNNRSQLETTE-HNRLIVDAYNANPSSMAAAIDNFKLMKAERKMAI 355

Query: 388 FGCGGDRDQGKRPIMGKIALDLA 410
            G   +          K    LA
Sbjct: 356 LGDMLELGAVSDEEHQKTVDALA 378


>gi|224536424|ref|ZP_03676963.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521979|gb|EEF91084.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 432

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 157/439 (35%), Gaps = 34/439 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+  +++  A         +  ++
Sbjct: 14  TSVTTDSRNCPEGSLFIALKGDNFNGNAFAAKALESGSAYVIIDEA------EYALAGDS 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V+N    L   A+    +    I+ +TGT+GK++    +  +  +     +  G  
Sbjct: 68  HYILVNNCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELMAAVLSKKYNVLYTQGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L +  +      +  + + AS  G  +  +D  +   G  T
Sbjct: 128 NNH----------IGVPLTLLRLRAE---HDLGIIEMGASHPGDIKELVDITEPEYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  +++  I    D      M R  N      + 
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDYLRERKNSTIFIHHDNLYLRNMARGLNLISYGSAD 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                        + +   +     +G+  +    L GE+   NAL A  +     + S 
Sbjct: 235 ELYVNGHVTGN--SPYLIFEWRAGKDGESHEVKTQLIGEYNFANALAAVTIGHFFEVASE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L +      R +     +    I   Y     S++  + N R +     +++ G 
Sbjct: 293 KIDAALREYTPQNNRSQL-KQTADNTLIIDAYNANPTSMQASISNFRNMEVENKMLILGD 351

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
             +  +       KIA  LA+           +D   +  +       F    +   A+ 
Sbjct: 352 MRELGKDGPKEHQKIADFLAE--------CGFKDVMLVGEQFAAAKHNFPTYPD-APAVI 402

Query: 451 TAIEMLNK-QDVLVVAGKG 468
             ++        +++  KG
Sbjct: 403 EVLQKSKPHGKTILI--KG 419


>gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 455

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 134/426 (31%), Gaps = 44/426 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                  P  +    +     
Sbjct: 106 TGSNGKTSTKDMISAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPNDTEK- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +   RL                             A+ ++       
Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  +I   D+     +                G    L        K  +T +      
Sbjct: 211 SNGILIAPGDSIIDPYLPENQMVI-------RFGDHQELNVTDIREEKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++E LE + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +       +  ++   L+    D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383

Query: 414 IVTDDN 419
           +   D+
Sbjct: 384 VFYGDD 389


>gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
 gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
          Length = 455

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 140/428 (32%), Gaps = 40/428 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P     + ++ + +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLNLPTPSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A    G     
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAALDGALKVDDTLAALQTLAKAWRGNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +        +      ++           P+ L      
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRHRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + +  +  G         K  A    N  R H+                  +
Sbjct: 153 NEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQ 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L ++  A+I  +D ++     +  + G +  + G     +H + +       +  +   
Sbjct: 213 GLGEDGLALIPCEDEHAAMF--QTTSQGHQQRTFGVDSGDVHAENIVLKPLSCEFDLVCG 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +    + P+PG   V+NA  AA L +A G+    V E L+    + GR           
Sbjct: 271 DERAAVVLPVPGRHNVHNAAAAAALALAAGLILDDVAEGLKGFSNIKGRLNVKSGIKGAT 330

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411
            I   Y    +S++  +  +  + + R I V G  G+  + +   M       A     +
Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389

Query: 412 IAIVTDDN 419
            A    DN
Sbjct: 390 AAYFVGDN 397


>gi|163814275|ref|ZP_02205664.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759]
 gi|158449910|gb|EDP26905.1| hypothetical protein COPEUT_00426 [Coprococcus eutactus ATCC 27759]
          Length = 255

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%)

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            G  + +DYAH   S   + + IR+I    R+  + G  GD+  G+R   G++    AD 
Sbjct: 104 NGRHVIIDYAHNHMSYSSLFRTIRSIYPTDRLTALVGAMGDKAFGRRREAGQMTNVYADR 163

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAGKGHET 471
            ++T+ +  SE P KI +EI   +    +   R E AIR  ++  +  DV+V+ GKG E 
Sbjct: 164 VVITEQDSGSEHPAKIGSEIARYVHKLCKIVPRREAAIRYILDKSDPGDVIVLTGKGAEK 223

Query: 472 VHIVT-NGEKKMSVDCDIIREILG 494
              V  N  +  + D +I++  L 
Sbjct: 224 TLRVGRNSVRPYAGDLEIVKAWLR 247


>gi|306836495|ref|ZP_07469467.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens
           ATCC 49726]
 gi|304567629|gb|EFM43222.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Corynebacterium accolens
           ATCC 49726]
          Length = 119

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRT 451
           KRPIMG+ A   AD+ +VTDDNPR+EDP  IRA +I G           E+G+R  AI  
Sbjct: 1   KRPIMGEAAATRADLTVVTDDNPRTEDPAAIRAAVIEGARQAAPDADIREQGSRARAIDE 60

Query: 452 AIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            ++     D ++V GKGHE   +V         D + +   + 
Sbjct: 61  VVDWAQPGDAIIVVGKGHEVGQLVGE-RTLHFDDREEMARAIE 102


>gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2,
           6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax
           paradoxus EPS]
 gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus EPS]
          Length = 479

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 85/440 (19%), Positives = 152/440 (34%), Gaps = 36/440 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +      I  V +D+R +  G +FVA+ G + D + F+ QA  +GA A +          
Sbjct: 24  VGDPATVIARVHTDTRTLADGDLFVALKGERFDANDFLAQAKEKGAIAAIAHHGLEAAGL 83

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           +         L V ++   L    +    +    ++AVTG++GK++V   +  I      
Sbjct: 84  AG--------LEVPDSLVALGALGAGWRAQFELPLIAVTGSNGKTTVTQMIAAILVAFRA 135

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                   +  +            P+ L       +      + +  +  G +  RL  I
Sbjct: 136 DRALATAGNFNNEIGV--------PLTLL---RLRARHQHAVLELGMNHPG-EIARLSAI 183

Query: 203 -KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +       N  R+H ++  T +A       +F   LP +  A+    D ++      AH
Sbjct: 184 SRPTIALVNNAQREHQEFMATVEAVAIENAAVFAV-LPDDGTAVFPYGDTFTSLWTDMAH 242

Query: 262 NAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + G R        +G  I L+          V +     +FD    + G     NAL A 
Sbjct: 243 DGGSRRCMTFGEDEGADISLESAEWKQGAWAVRVRTPLGNFDASLHIAGRHNAGNALAAT 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVD-YAHTSNSLEMILKN 375
              +A G+    + E L     V GR    E V +N     +  D Y    +S+   +  
Sbjct: 303 ACALAAGVPIDRIAEGLSAFEPVKGRSKASEVVLSNKHVLTLVDDSYNANPDSVIAAIDV 362

Query: 376 IRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +  +    ++V+   G  G+R       +G  A      A+ T     +E    I A   
Sbjct: 363 LAGLPGPHLLVLGDMGEVGNRAPEFHAEVGAWAKRRGIEAVYT---LGTETAHTIAA--F 417

Query: 434 HGIPGFIEKGNRIEAIRTAI 453
                     +  EA+  A+
Sbjct: 418 QDADNGRHFND-YEALHAAV 436


>gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
 gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
          Length = 479

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 79/468 (16%), Positives = 153/468 (32%), Gaps = 65/468 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD-----FSATI 86
            V  D+R +  G +F+A+ G + DGH F  +A+  GA  ++ +                 
Sbjct: 4   SVEFDTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAAREVDAPAIVVPPLPPGQ 63

Query: 87  RSNTPILVVDNT---------------RKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
            ++  + +  +T               R  +   A+         ++ VTG+SGK+S   
Sbjct: 64  ANSGSVALTGDTDGSGAAVLAALAKLARHVVDRLAAG-----GLTVIGVTGSSGKTSTKD 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + Q+ +  G +    G  ++                    AL   +S     + + A  
Sbjct: 119 VIAQLIEPMGPTVAPPGSFNSELGHPW-------------TALRADASTKFLVLEMSARG 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G      +      G+  N+G  H+    +++    AK  L E  LP++  A++  DD 
Sbjct: 166 VGHIAAAAETTPPRIGAVLNVGSAHVGEFGSREGIAKAKGELVEA-LPEDGLAVLNLDDP 224

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               +  R        +      +            +    +     +     PL GE  
Sbjct: 225 LVAAMASRTKAR-IVGVGESAGAQIRAADITVDAEARPSFRLITPEGEAPVTLPLHGEHH 283

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           V NAL AA +   +G  +  + + L  L      R E          +   Y     S+ 
Sbjct: 284 VGNALSAAAIARELGATTEEIAQRLSSLQRRSERRMEVTTRADGVTILNDSYNANPESVR 343

Query: 371 MILKNIRTITS--GRIIVVFGCG---GDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSE 423
             LK + +++    R   V G     G+        +G++ + L    + +V  +     
Sbjct: 344 AGLKALASMSRSGRRAWAVLGVMGELGEDSVNAHDSIGRLVVRLNIEKLVVVGQE----- 398

Query: 424 DPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 A +  G           +   +   A+    + L   DV++V
Sbjct: 399 -----AAAMHQGAFQEGSWGEESVLVPDVEAAVAVLHDQLRPGDVVLV 441


>gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Sinorhizobium meliloti 1021]
 gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
 gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti 1021]
 gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
          Length = 477

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 84/466 (18%), Positives = 158/466 (33%), Gaps = 34/466 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +L+  ++  P+      I  +S DSR I  G  F AI G++ DGH +   A+A GA 
Sbjct: 6   TSSDLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAA 65

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VVS A       A  R   P++VVD+  + +         +    I+AVTG+ GK++ 
Sbjct: 66  LLVVSEA----KLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ +    G     +   +               P+ LA       +       +  
Sbjct: 122 KEMLRHVLSPLGRVHASVASFNNHWGV----------PLTLA---RMPETTDFGVFEIGM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G        ++      T++   H+    +      AK  +FE ++      I    
Sbjct: 169 NHAGEILPLTRMVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVI--NR 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV---EGKDFDFLFPL 306
           D+   ++++RA  A        +        ++       + ++      G+  +     
Sbjct: 227 DSAQYDLLERAAAAAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGA 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YA 363
           PG     NAL A       G D+  V      +    GR          G    +D  Y 
Sbjct: 287 PGRHIAENALAAIAAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYN 346

Query: 364 HTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
               S+   +  +R       GR I V G   +  +    +   +A  + +  I  D   
Sbjct: 347 ANPASMRAAISLLRDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGI-ADVWL 405

Query: 421 RSEDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVV 464
              +   +R  +   +        G+       A+  ++  DV++V
Sbjct: 406 AGPEMAHLRDALPPEVSVVHRDVVGDLT---AYALGAVSAGDVVMV 448


>gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
 gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
          Length = 462

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 97/448 (21%), Positives = 157/448 (35%), Gaps = 43/448 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R ++ G +FV +VG + DGH F+PQA+A GA  ++ +              + 
Sbjct: 26  TGVSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVANGAAGVLAAQPV-----------DA 73

Query: 91  PILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P ++V++T K L     +           AVTG+ GK+SV   V+   + +G +   +  
Sbjct: 74  PAVMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTSVTRAVEAGLRLAGKAHASVKS 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                            P+ LA+                A         +   +  A + 
Sbjct: 134 ----------YNNHIGVPLTLARMPRDTERAVFEIGMNHADEITPLSSFV---QPHAVAI 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  HI+     +A            L     A++ AD+ +   +   A   G  V S
Sbjct: 181 TTVGPVHIENFPDGEAGVARAKAEIFAGLMPGGIAVLNADNRWFDYLKGEAEKVGATVWS 240

Query: 270 VGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  QG    L        +  V++ + G+   F     G     N+L    +  A+ + 
Sbjct: 241 FGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVLLMLEALDVP 300

Query: 329 SALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITS-GRI 384
               L  L     + GR  E       G    VD  Y     S++  LK +      GR 
Sbjct: 301 RETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTLGARKVAGRR 360

Query: 385 IVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           IVV       G+        + + IA    D+  +   + +S   E +      G     
Sbjct: 361 IVVLTDMLELGEDSARFHAELAEPIAAANVDMVFLAGVHMKSL-WEALPPTRRGGYAVVT 419

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           EK     A   AI      DV++V  KG
Sbjct: 420 EKLTAELA--GAI---RPGDVVMV--KG 440


>gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
 gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
          Length = 437

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 136/376 (36%), Gaps = 30/376 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R ++   +F+A+ G+  +G+L+  +A++ GA +++V                 
Sbjct: 19  SGISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDD-------PKLKNLGA 71

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +VV++T K L   A+    +    I+ +TG++GK++    V+++  +        G  
Sbjct: 72  NSIVVEDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQKYKILATKGNL 131

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L +         +  + + A+     ++         G  T
Sbjct: 132 NNH----------IGVPLTLLELTKE---HQIAIIEMGANHLDEIKNLCCISLPNWGYIT 178

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++           K  L+  L+ ++   +I  DD      +K+  N        
Sbjct: 179 NFGKAHLEGFGGVDGVIKGKSELYNHLIEQQQKILINGDDPLQ---IKQTKNYPVSSFGH 235

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +  F                + +   D  F   L G + + N   A        + + 
Sbjct: 236 GKENTFQISTNEK------DDELQLTYNDQIFTSNLYGAYNLNNIAAAILFGYIFEVPTK 289

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + ++K      R + +   +    +   Y     S+E  +K  + I + + +++ G 
Sbjct: 290 SIQKAIQKYQATNNRSQKIKIKNTSIILDA-YNANPTSMEHAIKAFKKIATQKSVLIMGD 348

Query: 391 GGDRDQGKRPIMGKIA 406
             +          +I 
Sbjct: 349 MKELGVESEKEHQQIV 364


>gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 427

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 128/370 (34%), Gaps = 32/370 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +DSR I+   IF ++ G+  +G+ F   AI  GA   V+      ++         
Sbjct: 14  SGVVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGAMYAVIDEEKYFENKEN------ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + VDN+   L   A+    K    I+ +TG++GK++    +  + +    +    G  
Sbjct: 68  -YIQVDNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLKTHFKTYCTKGNL 126

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +          L+           + +         +E  S   + +         G  T
Sbjct: 127 NNH----IGVPLSLLEISE-NTEFAVIEMGANHIGEIELLSKIAEPN--------YGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++   +++     K  L+E L          +DD   K ++             
Sbjct: 174 NFGKAHLEGFGSEEGVIKGKSELYEFLTESSGFIFYNSDDEKQKHILS---------NYN 224

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G       +  +   +   I VE  +  F   L G + + N + A  + I +G+   
Sbjct: 225 KKFGFGKEAGDLNYLVKAENPNIVVEVNNKTFKSTLFGNYNIPNVISAISIGIFLGVPVE 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            V   +        R + +  NS    +   Y    +S+ + +K  +       +++ G 
Sbjct: 285 KVKNGISDYISSNNRSQILKINSNNVILDA-YNANPSSMLLAIKAFQNAELENKVLILGD 343

Query: 391 G--GDRDQGK 398
                RD+ K
Sbjct: 344 MFELGRDENK 353


>gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
 gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 464

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 138/410 (33%), Gaps = 56/410 (13%)

Query: 1   MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL   ++ K F  L           +E  I  V  DSR + AG +F AI     +G+ +
Sbjct: 39  MKLLCQILQKRFSHL-----------KELSIQNVVMDSRKVVAGSLFFAIQ----NGNRY 83

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+ +GA  ++                +  ++ V +T  F+   A+         ++A
Sbjct: 84  VSEALEKGASIVIADH---------YFEPHERVISVKDTVLFMQELAAEYRSFLKTKLIA 134

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    V  I  ++  +   +G          +N +  P  I   +     + 
Sbjct: 135 ITGSNGKTTTKDIVYAILSKTFPTKKTLGN--------YNNHIGLPFTILNLEEGDEFA- 185

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  SS G         +   G  TN+G  H+++ +T++  F AK  L   L  
Sbjct: 186 ----VLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELLPYLPQ 241

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                                      V     +G    +             +  +  +
Sbjct: 242 GHFITSGD----------DIFLKKVSGVHVGYEEGNDYRIVSYRKKERMTSFQVRGKDYE 291

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                         NA +   L   IG+    +  +L ++ + P RFE            
Sbjct: 292 ICLEGKHNVM----NAAMGIALAEMIGMKPEEIQRNLSQIELSPMRFERFEYRGTEYIND 347

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
             Y  +  S+   L ++  + + R   V G     G+R+      + + A
Sbjct: 348 A-YNASPISMFAALDSLEEMKAERKFAVLGDMLELGEREIEFHKEVIQKA 396


>gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
 gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
          Length = 430

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 127/372 (34%), Gaps = 35/372 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA------YSLQDFS 83
            N V++DSR +    +F+ + G ++DGH +I QA+ QGA+ ++  +A       +     
Sbjct: 26  FNSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQQGADCVLADAAHLDIQENAQHILV 85

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
              R     + V+ T K L   A+    + P+   + VTG++GK++    +  I  +   
Sbjct: 86  LCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKIGVTGSNGKTTTKELLASIFAQKYR 145

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  ++           T  P+ +           V    +  +  G        +
Sbjct: 146 TVKNEGNLNSE----------TGLPLSVFTITKE---HEVGIFELGMNRKGEIAELAAVL 192

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K      TN+G  HI    ++ A    K  +F               D  S   +     
Sbjct: 193 KPNIAVITNIGTAHIGMLGSKDAIAQEKKHIFSCF------------DETSVGFVPAQDK 240

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               +  V +     +     A   +      +  K      PLPG+  V+NA  A  + 
Sbjct: 241 YAEFLQDVPHGKIVTYSADPDAYTLEGLSGAEIRYKGETIHLPLPGKHNVHNAFAAIAVA 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
               I    +   +E++  + GR + +            Y    +S+   L     I   
Sbjct: 301 EYCKIPLQSIKAGIEQMQALFGRSQIIRGPVTYLLDC--YNANPDSMNAGLALCANIRVS 358

Query: 382 GRIIVVFGCGGD 393
           G+ I V     +
Sbjct: 359 GKKIYVLASMKE 370


>gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 329

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 107/299 (35%), Gaps = 14/299 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              +++D+R +QAG +FVA+ G K DG  F   A+  GA A+++    S        R+ 
Sbjct: 28  FAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALRAGAVAVMLPEPVSDAHRKELDRTP 87

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +T       A     K    ++AVTG++GK++            G        
Sbjct: 88  GAVIGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNGKTTTKELTAAALSGRGAVCRT--- 144

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                  A +       P+ L              V +     G             G  
Sbjct: 145 -------AANYNNEIGLPLTLLGMTGE---DTAAVVEMGMRGRGQIAALAAIAAPTVGIV 194

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  H++   + +    AK  L E  +      I+ ADDA    +  +A +    +  
Sbjct: 195 TNVGETHMELLGSIENIARAKSELVEA-IAPGGIVILNADDARVAAMRAQAADGVRILTY 253

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                  I  + + +  N+ +  ++  G+  D+  PL G   VYN   A G   A    
Sbjct: 254 GIRAKADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNTRGACGGLCARPFP 312


>gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
 gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
          Length = 432

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 134/374 (35%), Gaps = 22/374 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV       D          I
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPR------I 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G  + 
Sbjct: 70  LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      TP                +  + + A+  G  +     ++   G  TN+
Sbjct: 130 HIGVPLTLLRLTPE-------------HELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L+E L       I    D  ++ +   +         +  
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFI--DKDNEYLTAISQGLTRICYGMEG 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   K+ A           EG+ F+    L G + + NAL A  +     + S  +
Sbjct: 235 GEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E LE       R +     +    I   Y     S+   L+N R +     +V+ G   
Sbjct: 295 CEALEAYVPHNNRSQLT-ETTDNKLIVDAYNANPTSMMAALENFRLMNVAHKMVILGDMK 353

Query: 393 DRDQGKRPIMGKIA 406
           +  +       KIA
Sbjct: 354 ELGETSHEEHQKIA 367


>gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
 gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
          Length = 449

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 155/446 (34%), Gaps = 41/446 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH +   AI +GA A++VS    + D         
Sbjct: 23  NEVQLNSKDVKKGDLFIALKGNR-DGHDYALDAIDKGAAAVIVSKQVEITDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            IL+VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -ILLVDDCFEALKKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDSLVFAGRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S         + +  +  G  +  +  +K      T
Sbjct: 135 NNYLGL-------------LINLASMADDMEYAILELGMNHKGEIRELVQILKPNIAVIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    AK  +FE     +   I    + YSK +    +    RV + 
Sbjct: 182 NISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADTNCYSKILSILKNLYIDRVYNF 241

Query: 271 GY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L     +  + ++   +  K  +   P        N  V   +   +G D 
Sbjct: 242 GILHNTHAQLVLYEHLGAQVRLKYKINNKSLEITIPFIPRHFAKNYTVVLLIIDILGKDI 301

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            +   HL  ++   GR + +   +        Y  +  S++  L+ ++ + +     + G
Sbjct: 302 EIAANHLANIYPTKGRGDIINIQNARVICDY-YNASPKSMQAALEYLKQVMAENKTAIIG 360

Query: 390 CGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEK 442
              +  +        ++  I         +   N +      P KI            E 
Sbjct: 361 DMLELGKNSKLLHEELVPYILDVGCSKIYLVGVNTKYIYDLLPSKIAK---KYFKNVDEL 417

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 I    ++    D++++  KG
Sbjct: 418 ------ITHITDLFKGNDLILI--KG 435


>gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 455

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 158/472 (33%), Gaps = 47/472 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +L       +  +         +     V +DSR I    +FVA+VG   DG+ ++
Sbjct: 5   MRLSELQEPLQGRITGE---------DVCFTNVFTDSRQIAKNGLFVALVGENFDGNDYV 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 GA A +VS + S            P L V++T+  L    +     +   ++A+
Sbjct: 56  EAVAENGAVAALVSRSSSSA---------LPQLCVEDTQTALGRLGAFNRDLYTGPLVAI 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK++  + +  +  + G +    G  +               P+ L          
Sbjct: 107 TGSSGKTTAKNLINGVLSQRGATLATNGNFN----------NEVGVPLTLL---RLSQEH 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V + A+  G      +  +       N    H++   + +     K  +F+  L  
Sbjct: 154 EFAVVEMGAARQGDISWLCELGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDA-LAA 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++ AD  ++++   RA  A     S+      +  +                    
Sbjct: 213 GDVAVVNADQPWAEDWKARAGTATILDFSLNGDAAVVATQIESHGIAGSSFVAVTPKGCV 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    LPGE  + NAL A  + +A  +    +   LE +  V GR       S    I  
Sbjct: 273 DVSLRLPGEHNIANALAAIAVGLACELALDEIAAGLESVAPVAGRLSVQVAASGALVIDD 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPIMGKIA--LDLADIAIVT 416
            Y     S    +  +        +V+      G+        +G  A    LA    V 
Sbjct: 333 CYNANPGSALAAIDTLAASEGQGTLVMGAMLELGENSVELHRQLGVHAREAGLAQFWGVG 392

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +        K+  +       + E  +  +A+  A    ++ D +++  KG
Sbjct: 393 AE-------LKVAVDAFGERGRWFEHCD--QAVVAASASFSQGDTVLI--KG 433


>gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
 gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
          Length = 425

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 146/438 (33%), Gaps = 46/438 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+DSR I    IF A+ G   +G+ F  +A+++GA   VV                   
Sbjct: 16  VSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVD--------EGDFPDEPRC 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +    L   A     +    I+ +TG++GK++    +  +  +   +    G  + 
Sbjct: 68  IRVPDALAALQQLAMHHRLQCKARIIGLTGSNGKTTTKELIAAVLSKKYRTLATRGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P                +  V + A+  G  +   +  +   G  TN 
Sbjct: 128 HIGVPLTLLRIAPE-------------TELAIVEMGANHQGEIRLLSEMAQPDFGYITNF 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L+E L+ + +   + ADD    E +    N          
Sbjct: 175 GKAHLEGFGGVEGVIRGKSELYENLMERGATIFMNADDPVQFEKLAGYANCVGFSTRNPA 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             +  +L             + ++  D      L G +   N  V+A +    G+ +  +
Sbjct: 235 YMQIKNLTD--------GPAVRLQVDDVVVQTQLTGRYNFSNCAVSACIGKHFGVPAEAI 286

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG- 391
            E LE       R + +   +    +   Y     S+   L+N+  + S R I + G   
Sbjct: 287 AEALESYIPANNRSQLIERGNL-RILLDAYNANPTSMAAALENLAEMDSPRKIAILGDMF 345

Query: 392 --GDRDQGKRPIMGKIA-LDLADIAIVTDDN--------PRSEDPEKIRAEIIH----GI 436
             G     +   +G+ A     +   +   +         R  D   +  E+      G 
Sbjct: 346 ELGAEAAAEHEAVGRFALSKNPEKLYLVGQHFYDTALPAARFPDFAALSRELKANPLTGP 405

Query: 437 PGFIEKGNRIEAIRTAIE 454
              + KG+R  A+   +E
Sbjct: 406 ATVLIKGSRGMALERVLE 423


>gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
 gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
          Length = 432

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 135/374 (36%), Gaps = 22/374 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV       D          I
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPR------I 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G  + 
Sbjct: 70  LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      TP                +  + + A+  G  +     ++   G  TN+
Sbjct: 130 HIGVPLTLLRLTPE-------------HELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L+E L       I    D  ++ +   +         +  
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFI--DKDNEYLTAISQGLTRICYGMEG 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +       K+ A           EG+ F+    L G + + NAL A  +     + S  +
Sbjct: 235 REGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E LE       R +     +    I   Y     S+   L+N R +     +V+ G   
Sbjct: 295 CEALEAYVPHNNRSQLT-ETTDNKLIVDAYNANPTSMMAALENFRLMNVAHKMVILGDMK 353

Query: 393 DRDQGKRPIMGKIA 406
           +  +       KIA
Sbjct: 354 ELGETSHEEHQKIA 367


>gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
          Length = 464

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 150/401 (37%), Gaps = 22/401 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +    LI   +   +   +  I+ VS+D+R +  G ++VA+ G + DGH F   A A+G
Sbjct: 2   KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQARG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V            +    P ++V ++   L+  A+ +       + A+TG++GK+
Sbjct: 62  ASALLVER---------LLPIELPQVLVADSELALAKIATGMQRDRGTEVFAITGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SV S +  I Q+    + +       +   ++N +  P  +  A   +  +        +
Sbjct: 113 SVKSLLLSILQQVAQHAHK---VVYANPGNRNNEIGLPLAVIDAPEDADYA-----VYEM 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A   G   +  D  +       N+   H++   +               LP +  A+I 
Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSL-LGVAVTKGAIYAALPADGVAVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDAY +   +       R   + Y       I  + + A     Q T+     +   + 
Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADITARDIRAGAQGNQFTLVSPAGEARVVL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V NAL AA L +A G+D AL+   L +   VPGR +       G  +  D  +
Sbjct: 284 GLPGRHNVSNALAAASLALAAGVDLALIAAGLAEAQPVPGR-QIAHQLRNGAVLVDDSYN 342

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            +        +          +V G   +       +  + 
Sbjct: 343 ANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQA 383


>gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
          Length = 456

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 78/444 (17%), Positives = 152/444 (34%), Gaps = 40/444 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            +VS+D+R I+ G +F+A+ G + DG+ ++  A  +GA   +                  
Sbjct: 27  TDVSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGASIALAERPC----------PGW 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++VD+    L   A+    +    ++ VTG+ GK+S    +  +  ++  +    G  
Sbjct: 77  PVVLVDDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEMIFSVLSQAFRTLKNEGNL 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +N +  P  +                  +  S+ G             G  T
Sbjct: 137 --------NNLIGMPMSV-----FGLERQHEAAVFEMGMSAFGEISALSQVAAPDIGVIT 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  HI+   +Q+    AK+    + +      I+  DD     V  +   A      +
Sbjct: 184 NIGVSHIEMLGSQENILKAKL-EILDGMRPGGKLILNGDDPLLAGV--QTDKAEVITYGI 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              G     ++V +        +   G        + G+  VYNAL A  +   +G++  
Sbjct: 241 ENTGCAYTAEEVESGAEGTAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGRVLGMEPD 300

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFG 389
            +     +      R +              Y  + +S+      +RT+   GR + V  
Sbjct: 301 TIAAGFLQYAPTGYRQKIERVGGVTFVEDC-YNASPDSMRSAFDVLRTVQKTGRRLAVLA 359

Query: 390 CG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
                GD        +G+ A +   D+     +N R             G        + 
Sbjct: 360 DMLELGDTAPDAHRAVGREAAENGVDVLFSYGENARYYQEGY----TQAGGTQGAHFTD- 414

Query: 446 IEAIRTAI-EMLNKQDVLVVAGKG 468
             A+  A+ +ML + D ++   KG
Sbjct: 415 KAALTDALCQMLREGDAVLF--KG 436


>gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 426

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 138/410 (33%), Gaps = 56/410 (13%)

Query: 1   MKL-QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MKL   ++ K F  L           +E  I  V  DSR + AG +F AI     +G+ +
Sbjct: 1   MKLLCQILQKRFSHL-----------KELSIQNVVMDSRKVVAGSLFFAIQ----NGNRY 45

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+ +GA  ++                +  ++ V +T  F+   A+         ++A
Sbjct: 46  VSEALEKGASIVIADH---------YFEPHERVISVKDTVLFMQELAAEYRSFLKTKLIA 96

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    V  I  ++  +   +G          +N +  P  I   +     + 
Sbjct: 97  ITGSNGKTTTKDIVYAILSKTFPTKKTLGN--------YNNHIGLPFTILNLEEGDEFA- 147

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  SS G         +   G  TN+G  H+++ +T++  F AK  L   L  
Sbjct: 148 ----VLEMGMSSFGEIDALGKIARPDYGIITNIGDSHLEFLKTRENVFKAKTELLPYLPQ 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                                      V     +G    +             +  +  +
Sbjct: 204 GHFITSGD----------DIFLKKVSGVHVGYEEGNDYRIVSYRKKERMTSFQVRGKDYE 253

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                         NA +   L   IG+    +  +L ++ + P RFE            
Sbjct: 254 ICLEGKHNVM----NAAMGIALAEMIGMKPEEIQRNLSQIELSPMRFERFEYRGTEYIND 309

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
             Y  +  S+   L ++  + + R   V G     G+R+      + + A
Sbjct: 310 A-YNASPISMFAALDSLEEMKAERKFAVLGDMLELGEREIEFHKEVIQKA 358


>gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG]
 gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF]
 gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
 gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
          Length = 473

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 157/479 (32%), Gaps = 53/479 (11%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        + +  +   V +DSR ++ G +FVA  G + DGH +   
Sbjct: 1   MIALSLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       AT     P +VVD+    L   A  +  +    ++A+TG
Sbjct: 60  ----------GAVAAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVERLGTAVIAMTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+  R G + +  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTEE-------------TRH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++         G   N+G  HI     ++    A      E LP+  
Sbjct: 157 LVLEMGARGIGHIRYLTSLTPPSIGIVLNVGSAHIGEFGGKEKIAEA-KGEMVEALPESG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD   + +  R                      +     + +  +       + 
Sbjct: 216 LAVLNADDPLVRGMAPRTRARVLLFGEADDAEVRAENVTLTDTG-RPRFLLRTPTGCGEV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361
              L GE  V NAL AA +   +G+ +  +   L +       R E          +   
Sbjct: 275 TLRLYGEHHVSNALAAAAVAHELGMPAEEIALGLSEARSLSRWRMEVTERPDGVTIVNDA 334

Query: 362 YAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL--A 410
           Y  + +S+   L+ +  +        GR   V G     GD        +G++A+ L  +
Sbjct: 335 YNASPDSVRAALRALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVS 394

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  V       ++   +R  +     G      +   +   AI      L   DV++V
Sbjct: 395 KLVAV-----GGQEAAWLR--MGAYNEGSWGEESVHVSDTQAAIDLLRGELRPGDVVLV 446


>gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC
           6.3.2.10) [Burkholderia rhizoxinica HKI 454]
          Length = 476

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 152/456 (33%), Gaps = 36/456 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E    +    +   +    ++VS+DSR      +FVA+ G + D H F+P   
Sbjct: 1   MTMLTLREAAALIDGATVLGDDTVAFDQVSTDSRSCGPASLFVALKGERFDAHDFLPDLA 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +G  A++VS         +      P + V +TR  L   A+    +    ++AVTG++
Sbjct: 61  RRGVAAVLVSR--------SPGDWRVPAIRVADTRAALGALAAGWRRRFALPLVAVTGSN 112

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V   +  I   +   + ++     +++           P+ L +         +  
Sbjct: 113 GKTTVKEMIASIFAAAVGHAQRLSTQGNLNNVIGM-------PLTLLQ---LAPQHRLAV 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V +  +  G  Q              N  R+H ++  T +A            LP +  A
Sbjct: 163 VELGMNRPGETQQLARIAGPTIALVNNAQREHQEFMATVEAVALEHA-SVIHALPPDGTA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  ADD Y+      A +      ++   G            +   + I       +   
Sbjct: 222 VFPADDPYAGIWRVAATDNRIVDFALRRPGANSDAAVQGTTTDTGALRIETRAGALEVSL 281

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE---FVGTNSRGGRIYVD 361
             PGE    NAL A    +A G+    +   LE    V GR +          G  +  D
Sbjct: 282 RAPGEHNARNALAATAAALAAGVGLDAIRRGLETFEPVNGRLQAKLAQAMPWAGATVIDD 341

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTD 417
            Y    +S+   +  +    + R++V+   G  GD        +G  A     D      
Sbjct: 342 TYNANPDSMRAAIDVLTMRQAPRVLVMGDMGEVGDNGPAFHREVGAYARERGLDALYALG 401

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D  R         +            +  EA+  A+
Sbjct: 402 DASR---------DACTAFGPHAHHFDSAEALICAL 428


>gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
 gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
          Length = 432

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 134/374 (35%), Gaps = 22/374 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ +  QA+ +G +  VV       D          I
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHPR------I 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+  K L   A+    K    I+ +TGT+GK++    +  + Q+     +  G  + 
Sbjct: 70  LLVDDCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      TP                +  + + A+  G  +     ++   G  TN+
Sbjct: 130 HIGVPLTLLRLTPE-------------HELAVIEMGANHPGEIKALTRIVEPDYGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L+E L       I    D  ++ +   +         +  
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYEHLRYNGKHIIFI--DKDNEYLTAISQGLTRICYGMEG 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   K+ A           EG+ F+    L G + + NAL A  +     + S  +
Sbjct: 235 GEGLYISGKLGACAPFLSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E LE       R +     +    I   Y     S+   L+N R +     +V+ G   
Sbjct: 295 CEALEAYVPHNNRSQLT-ETTDNKLIVDAYNANPTSMMAALENFRLMNVAHKMVILGDMK 353

Query: 393 DRDQGKRPIMGKIA 406
           +  +       KIA
Sbjct: 354 ELGETSHEEHQKIA 367


>gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
 gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
          Length = 440

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 60/388 (15%), Positives = 127/388 (32%), Gaps = 35/388 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF+A+ G   DG+ F   A+ +G    +V              ++  I
Sbjct: 16  VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEK------EYADPTDKRI 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TS 151
           ++V++        A     +    ++ +TGT+GK++    +  +               +
Sbjct: 70  ILVEDALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAEKYKVHHTEANYNN 129

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +        + +   I                + + AS  G  +  +  ++   G  TN
Sbjct: 130 DVGVPRTLLGIGSDDEI--------------AVIEMGASHPGDIKKLVTYVEPTCGLITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +GR H+    + +     K  L++ L   ++   +   +A   E+  +            
Sbjct: 176 VGRAHLQGFGSFEGVKRTKGELYDYLKAHDALLFLNESNADLTEMAAQREFDRIITYGQD 235

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGK------DFDFLFPLPGEFQVYNALVAAGLCIAI 325
                      CA   K +   S   K       ++    L G + + N L A  + +  
Sbjct: 236 DTADVQGKVISCAPFLKFEWQSSSLNKQQPANTIYEVQTHLIGSYNLDNMLAAITIGLHF 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    +   LE       R +     +    I   Y    +S+   ++N R +     +
Sbjct: 296 GVTPQQINHALESYIPHNNRSQLT-ETAHNKLIVDAYNANPSSMAAAIENFRLMEVEHKM 354

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIA 413
            + G         R +    A +   + 
Sbjct: 355 AILG-------DMRELGAASAEEHQKVV 375


>gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 461

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 76/488 (15%), Positives = 157/488 (32%), Gaps = 65/488 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+++      E +    +      ++KI  VS DSR I  G  FV + G   DGH FI
Sbjct: 1   MTLREI-----SEAVGG-KLPAAGDLDKKIGRVSIDSRDIGPGDFFVPLAGEHTDGHRFI 54

Query: 61  P-----------QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
                        A ++                + T      ++ V++  + L   ++  
Sbjct: 55  AAAAEKGAAGCFAAFSK----------------NVTHPEGMTVISVEDPEQALQDLSAFY 98

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
             K    ++AVTG+ GK++    +         +    G  +  +       LT      
Sbjct: 99  RRKFQLPVVAVTGSVGKTTTKDMIAAALSPELKTLKTEGNLN--NHLGVPLMLTRLDS-- 154

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                    +     + +  S +G                TN+G  H++   +++    A
Sbjct: 155 ---------TYEAAVLEMGMSGYGEIDLLAKLALPTVAVITNIGESHLEMLGSREGIARA 205

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                   L  +  A++ AD+      +K                       +     K+
Sbjct: 206 -KCELLGHLAADGVAVVNADEPLLVPHIK-GLGCRVITFGFDEHATVRCTDIINDEAGKR 263

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            +         + + PLPG   +YN + A  +   +G+D +++ E   ++ +   R E V
Sbjct: 264 AIIEQEGFAPLEVVPPLPGRHNIYNLMAALAVGRLLGVDDSVLTEGFSRVRLSGMRLETV 323

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCG---GDRDQGKRPIMGKI 405
            T +    I   Y  +  ++      +  +        V G     GD ++      G+ 
Sbjct: 324 TTPAGIQVINDAYNASPTAVSAAFDVLAELAKDAARFAVLGDMLELGDWEEEGHRQTGRQ 383

Query: 406 ALDL--ADIAIVTDDNPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQD 460
                 + + ++       E  + I    +  G P        +  +A +   ++    D
Sbjct: 384 VARHNLSGLLVL------GERAQLIADGAVAAGYPPQRVYRCESHAQAAQVIAKIARAGD 437

Query: 461 VLVVAGKG 468
            +++  KG
Sbjct: 438 WVLL--KG 443


>gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
 gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
          Length = 451

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 92/420 (21%), Positives = 156/420 (37%), Gaps = 39/420 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+        EL   L    +   + +I  VS+D+R + AG +FVA+ G + D H F 
Sbjct: 2   MTLR------LAELAQVLDARLIGD-DGEITVVSTDTRTLGAGALFVALRGERFDAHDFC 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+  GA A++V     L           P LVV ++ K L      +  +    +LA+
Sbjct: 55  EQAVQAGASALLVERELPLA---------IPQLVVTDSLKGLGRLGKLVRERINPKVLAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++V      I +  G      G  +               P+ L          
Sbjct: 106 TGSCGKTTVKEMATAILRNEGEVLATAGNFN----------NEVGVPLTLL---RLEPQH 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G         K  A    N+   H++   + +  F+A      E L +
Sbjct: 153 KFAVMELGANHPGEIAWTTSLAKPDAAIINNVAAAHLEGFGSLEGVFHA-KSEIFEGLSE 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+ AD+ +  +  +R           G    F     V       +  +     + 
Sbjct: 212 GGTAIVNADNEFWPKWRERGIQCA--FSIEGQSQPFHARNLVLNERGCAEFVMVTPQGEL 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V NAL AA  C+A+G     V   LE++  V GRF        G  +  
Sbjct: 270 SLTLAIPGRHNVANALAAAAGCLALGASLGSVKAGLEQMAPVKGRFCVQRWG--GLTLVD 327

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
           D Y  +  S+   +  +  +   + ++VFG     G+    +   +G+ A +    A++T
Sbjct: 328 DTYNASVESVLAGIDALTAMGGFK-VLVFGDMRELGEESAEQHARVGRHARERGLDAVLT 386


>gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 433

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 121/359 (33%), Gaps = 23/359 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I  G IF A+ G+K D + F  QA+  GA   V+ +             +   
Sbjct: 16  ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNG--------DYNVSQKC 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+    L   A     +     + +TG++GK++    ++ +  +   +    G  + 
Sbjct: 68  ILVDDVLSCLQNLARYHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQHFNTYATYGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      T   I     ++ +         +E              +   G  TN+
Sbjct: 128 HIGVPL-----TILAIDQTVEMAVIEMGANHQKEIELLCSI--------AQPTHGLITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L++ L   +    +  D     +++        +      
Sbjct: 175 GKAHLEGFGGAEGVKKGKGELYDYLKTSKGVIFVNQDSKVLTDMVAERALTDVQYYGSDI 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                      + + K +  I  E         L G + + N L A  +     +    +
Sbjct: 235 GNNISGELLENSPYLKLRWKIKNEA-YHTVQSQLTGAYNMDNLLAAICIGHYFKLSPDEI 293

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
              L        R + V T S        Y    +S+ + ++NI  + +GR +V+ G  
Sbjct: 294 NTGLSGYQPHNNRSQIVKTASNTLICDY-YNANPSSMFVAIENIGKLPAGRKVVILGDM 351


>gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
 gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
          Length = 130

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            P L V +TR  L   A     +    ++AVTG++GK++V 
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVK 118


>gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. m3-13]
          Length = 453

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 90/477 (18%), Positives = 167/477 (35%), Gaps = 52/477 (10%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++  + Q      ++    +  VS D+R   +G +++ I+G   +GH F+  A
Sbjct: 1   MIKRTLKQIQEMAQGQPISSEYSAIVVEGVSKDTREDMSGKLYIPIIGENFNGHAFVRDA 60

Query: 64  I-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           I  +GA A                 ++  ++VVD+T + L   AS    +    ++ +TG
Sbjct: 61  IEKKGAVASFWQKDQPEP------PTDLNLIVVDDTIEALQHLASSYRNQIGMKVVGITG 114

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    V  + + +       G          +N +  P  I     LS      V
Sbjct: 115 SNGKTTTKDMVTSVLETTFRVHKTAGN--------YNNHIGLPLTI-----LSMKEDTEV 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  +      K  A   TN+G  H+    +++    AK+ +   L     
Sbjct: 162 AVLEMGMSGRGEIELLSSIAKPDAAVITNIGESHMQDLGSREGIAEAKLEIAAGLKQDGK 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I          +  R       +            K +          I    ++ ++
Sbjct: 222 LIING----DEPLLTDRVGGKTNVIPFGLKANNDYQAKDIMLKGIGTHFII----EETEY 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+ G   V NAL A  +    G+      + LE+L +   R E V T+     I   Y
Sbjct: 274 FIPVLGAHNVTNALAAIIVGELFGVSEENRKKGLEQLVITGMRNEVVETSGGWTVINDAY 333

Query: 363 AHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTD 417
             +  S+   L  + ++   G+ I V G     GD ++     +G+ +     D      
Sbjct: 334 NASPTSMRAALDLLGSLDGYGKKIAVLGDMLELGDMEKTFHHEIGQYVKDKNVDYVF--- 390

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRI------EAIRTAIEMLNKQDVLVVAGKG 468
                     +  EI  G    +E  +        E  R    +L   DV++V  KG
Sbjct: 391 ------TFGALGMEIAKGAQEVMEPSHVKPFMNKQELTRELRPLLENGDVVMV--KG 439


>gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 450

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +     +    KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSEL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              + P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
 gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
          Length = 450

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +     +    KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSEL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              + P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
          Length = 480

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 149/461 (32%), Gaps = 51/461 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +  G +FVA+   + DGH F+ QA+ +GA A +V            + ++ 
Sbjct: 24  DGVSIDTRTLAPGDLFVALKAAR-DGHEFVAQALEKGAAAALV------THRPEGVAADA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+LVV +    L         +    + A+TG+ GK+S    ++   +R G +       
Sbjct: 77  PLLVVPDVLAALEALGRAARARTNARVAAITGSVGKTSSKEMLRAALERQGRTHAAEASY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSY----LSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +               P+ LA+  +     +   G+ H    A    L +  +  + +  
Sbjct: 137 NNHWGV----------PLTLARMPADTEYAIVEIGMNHPGEIAPLARLARPHVAMVTI-- 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
                +   H++   + +     K  +FE L P  +  I                     
Sbjct: 185 -----VAPAHLEAFDSIEGIAREKASIFEGLEPGGTAIINGDLPTTPILRAAAEAAGAEI 239

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V      G    L  +         +  +   +        G     NAL       A+G
Sbjct: 240 VSFGTQAGNHHRLTDIKVHEGCTVASARLWRTEVHLKVATEGAHFAVNALGCLATAAALG 299

Query: 327 IDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---- 377
            D +  L  L      PGR            + G    +D A  +N   +          
Sbjct: 300 ADRSHALMGLACWAPPPGRGTRETLVLDDGVAVGAIELIDDAFNANPASLAAALEVLAAA 359

Query: 378 -------TITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKI 428
                   I  GR I + G   +       +   +A +  +A + +V    P   +  + 
Sbjct: 360 RPRDDLGHIGKGRRIAILGDMLELGPEAAGLHAAVADEPAMAHVDLVHCVGPLMRELHRA 419

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
             +   G        +       A  +++  DV++V G KG
Sbjct: 420 LPDGRRG-RWVENAEDLA---AKAARLVDPGDVVLVKGSKG 456


>gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
 gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
          Length = 471

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 145/452 (32%), Gaps = 44/452 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G  F+ + G + DGH F+  A+ +GA+A  V+   +       +      
Sbjct: 32  VCTDSRTLEPGSFFIPLRGERFDGHRFLANAVERGAQAAFVARDCAH-----AVPDGLLH 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V++T       A+    +    ++AVTG++GK++    ++              P   
Sbjct: 87  WRVEDTLLAYQQLATLHRRQLSAAVVAVTGSAGKTTTRELIRSALA----------PLGD 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +   +N      P+ L  A    ++  V      A     +  RL        +    
Sbjct: 137 VQASDSNNNNDIGVPLTLLGAHREHAAVVVEMGMRGAG----EIERLSRCAEPQIAVITN 192

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
                      +A   +        L      +I A DA  ++ + R        +++  
Sbjct: 193 IGTAHIGRLGSRAAIASAKCEITAALSPLGIVVIPAGDALLEDALSRCWTGRILRVALDG 252

Query: 273 QGKFI----------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                           L     + +      S+      F  PL G     N ++A  + 
Sbjct: 253 DEPENGPEVSGLTSGDLPTPDLVGHFLPEDQSLAFNGLRFHCPLEGRHNARNFMLALAVA 312

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             + +    +     ++     R   +G  +        Y  +  ++   L+ +     G
Sbjct: 313 QELKVSLQTIQALDVQVPGGRNRRLSLGGIALLDET---YNASPEAVFAALQ-LLAHQPG 368

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG-IP 437
           R   V G     G R       + + A+DL  D  +V       E       E+  G + 
Sbjct: 369 RRYAVLGTMLELGSRSVDLHRRVAQKAVDLQLDGLVVVAGGEEGE-----AMEVAAGSLS 423

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            F       +A     E L   D +++ A +G
Sbjct: 424 RFERVETPEQAALPLAEWLKPGDTVLLKASRG 455


>gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
 gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
          Length = 466

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+    I   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYHHILPQGVAIIPQQDD----FTAEIREA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +     G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 457

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 139/417 (33%), Gaps = 28/417 (6%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   E+  + + S       +  IN VS D+R I+   +++ I+G K +GH FI +A
Sbjct: 1   MIRRKLNEIQEMVKGSGLKKSHEDIWINGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +      + +       + P ++V++T   +   A     +    I+ +TG+
Sbjct: 61  MGNGATATLWDKNQPIPNI------DFPFILVEDTLDAIQTLAKAYRNQLNVKIIGITGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    +  I Q    +   +G  +               P+ L +      +  + 
Sbjct: 115 NGKTSTKDILFNILQTVYKTHKTLGNLNNH----------LGVPLTLLEM---AENTEIA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +             TN    HI+   + +    AK+ + E L P    
Sbjct: 162 VIEMGMSGLGEIELLSKIASSDVAIITNSTNVHINDLGSVENILKAKLEIIEGLKPHGLF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                       V K           +     +                +  +       
Sbjct: 222 IYFGDSPPLRVGVEKLDLKQKKVTFGINRDNDYTVKLISSENEGIYFELVGSDSPRLF-- 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G  Q+YNA  A  +     I    + E + K+     R E +  N     +   Y 
Sbjct: 280 LSMLGNHQIYNAAAAIAVAQYFNITLEKIQEGMLKIEATGMRNELIKCNGFD-ILNDSYK 338

Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
               SL  +L  + +    +  IVV G     G+ +      +G+         + T
Sbjct: 339 SNPISLRSVLDTMYSFKKYKQKIVVLGDMFGTGENEITTHIDIGEEIDPSQIDYVFT 395


>gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
 gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
          Length = 474

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 92/481 (19%), Positives = 169/481 (35%), Gaps = 56/481 (11%)

Query: 6   LIYKDFPELINQL-SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+ + +           ++   V  DSR + +G +FVA  G K DGH +    
Sbjct: 1   MIALSLAEIASAVDGRLVAADPTAQVTGSVEFDSRKVTSGGLFVAFDGEKVDGHDY---- 56

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
                 A     A +            P++VV +    ++  A  +  + P+  ++ +TG
Sbjct: 57  ------AAAAVQAGAAAVLGTREVPGVPMVVVADALTAMARLARAVVDRLPQLTVIGLTG 110

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +SGK++    + Q+  R G +    G  +                       +  +    
Sbjct: 111 SSGKTTTKDLIAQLTARLGETVAPPGSFNNELG---------------HPYTALQAVPST 155

Query: 183 THVSVEASSHGLDQHRLDGI--KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            ++ +E  + G+   R              N+G  HI    +Q+    AK  L E  LP 
Sbjct: 156 RYLVLEKGARGIGHVRYLCEVAPPRISVVLNVGVSHIGEFGSQENIALAKGELVEA-LPA 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++ ADD     +  R      R     +         +     +   T+       
Sbjct: 215 DGLAVLNADDPLVDAMAGRTTARVVRYGEAAHADVRAVDVTLDERG-RPAYTLVTPEGSA 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G  QV+N L AA +   +G+    +   L +L +V  R   V   + G  +  
Sbjct: 274 TVRLALTGRHQVWNTLAAAAVARELGMPLVEIAVALGELGLVSTRRMDVFERTDGVTVID 333

Query: 361 D-YAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414
           D Y     S+ + L+ +  + +GR    V G     G+ +      +G++A +L  D  +
Sbjct: 334 DSYNANPASMSVALRALAGVGAGRRTFAVLGYMAELGEFEAQGHTEVGRLAAELGVDRLL 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-------IEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           V           +  A I HG           +   ++  A++     L   DV++V  K
Sbjct: 394 V---------VGEAAAPIHHGATSVGDWGGESVLLTDQAAAVQVLRSELRPGDVVLV--K 442

Query: 468 G 468
           G
Sbjct: 443 G 443


>gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
 gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
          Length = 487

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 96/509 (18%), Positives = 174/509 (34%), Gaps = 69/509 (13%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDGHLF 59
           QD++      L+N          +  IN   ++SR I        +FV I+G + D H F
Sbjct: 6   QDILNATNGRLLNGS-------ADTVINGFFTNSREIGSLPFKNALFVPIIGERVDAHNF 58

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IPQ +  GA+A  +   + L        +    + V++T   L         K     + 
Sbjct: 59  IPQVVENGAKAFFIKKGHELPSGIGETAA----IEVEDTEAALLDTGLWYREKFNIPFIG 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK++    V        +                +   T   P+ L         
Sbjct: 115 ITGSVGKTTTKEMVAAALSSINIH-----------KTKGNANSTIGLPLTLFG---LEPC 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  S     +  ++  +     FTN+G  HI    +++     K+ + +    
Sbjct: 161 NEAAIIEMGISEFHEMEKLVEAGRPNHAIFTNVGSAHIGNLGSKENILKEKLHITDCFT- 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSV----------GYQGKFIHLKKVCAIHNKQ 289
            +S   I ADD    +V         + +             +    I +          
Sbjct: 220 ADSVLFINADDELLMKVAAENSEFRPKNVKHIVTFGINEKADFYASSITISDSGTDFVAN 279

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             + + E           G   V NAL A  + + +GI  A+  + L +   +PGR   +
Sbjct: 280 YKSENGEAVSEQIHLKTLGLHNVRNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGNII 339

Query: 350 GTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSG-----RIIVVFGCG---GDRDQGKRP 400
            +N  G  I  D Y  + +S++  ++ I  +  G     R  VVF      G+  + +  
Sbjct: 340 KSN--GLTIIDDTYNASPDSMKASVQIIGEMRGGTEPINRRFVVFADVLELGEYAETEHY 397

Query: 401 IMGKIA--------LDLADIAIVTDDNPRSEDPEKIR----AEIIHGIPGFIEKGNRIEA 448
            +G+           +  D  I        +D E+I     +E +   P        +EA
Sbjct: 398 KVGEYIKFYNKENTENKIDCLITV-----GKDSEQIILGVKSEDLETNPVTRHFSTNVEA 452

Query: 449 IRTAIEMLNKQDVLVVAG-KGHETVHIVT 476
                 +L K D +VV G +G +T  I+ 
Sbjct: 453 SDYLKSLLKKGDAIVVKGSRGMQTEEIIN 481


>gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 469

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 134/389 (34%), Gaps = 34/389 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
              Q    +I  + +DSR  +AG  F+A+ G + D H FI Q   QG +  +VS     +
Sbjct: 28  LNDQAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQGCQVAIVSQPIDAE 87

Query: 81  DFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                       LVV +TR  L    A R        ++A+TG+SGK++    +  I  R
Sbjct: 88  ---------VCQLVVPDTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTTKEMLGSILSR 138

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +    G  +             P                   + + AS  G   +  
Sbjct: 139 IAPTLVTRGNLNNDLGVPVMLLELHPE-------------HQYAVMELGASHQGEIDYTS 185

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           + ++ +     N+G  H+     +     AK  ++  + P  +  +  ADD         
Sbjct: 186 NLVQPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADDFADSIRQAV 245

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    + G     I   ++          ++          P  GE  V NA  AA
Sbjct: 246 QTEQVLSFGAGGE----IFATEIELQAQSATFKLNTPQGVRQVNLPFAGEHNVQNATAAA 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIR 377
              +AIGI    ++  LE+     GR  F     +G  + +D  Y     S+    + + 
Sbjct: 302 AFALAIGISLDDIVLGLEQAVGAKGRLNF---IQQGRHLLIDDTYNANPTSMRAAAEVLA 358

Query: 378 TITSGRIIVV--FGCGGDRDQGKRPIMGK 404
                R++V+   G  G     +  ++G+
Sbjct: 359 QQEGVRVMVMGDIGELGSSAAQQHYMLGR 387


>gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 497

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 156/397 (39%), Gaps = 28/397 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL  L       LI   +   +   +  I+ V +D+R +  G ++VA+ G + DGH F 
Sbjct: 1   MKLTPL------SLIAHWAGGELHGDDAMIDAVGNDTRTLANGSLYVALRGERFDGHDFA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+AQGA  ++V               + P ++V+NT   L+  A+ +       ++A+
Sbjct: 55  ADAVAQGASGLLVDR--------LLPALSVPQVLVENTELALARIAAGMQRDRATRVIAL 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+SV + +  I + +G      G T   +   ++N +  P  +  A   + ++  
Sbjct: 107 TGSNGKTSVKALLLSILEEAG---RVDGTTVYANPGNRNNEIGLPLAVIAAPDDADVAI- 162

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A   G   +  D  +       N+   H++   +       K  ++   LP 
Sbjct: 163 ----YEMGAGKPGDIAYLTDIAQPHVALVNNIAPAHLERLGSLLGVARTKSAIYAA-LPA 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH----LKKVCAIHNKQQVTISVE 296
           +  A+I ADDA+     ++ H        V   G         + +       Q T+   
Sbjct: 218 DGVAVINADDAFGAWFEQQLHAQPVHGRRVLRYGLQASADLTARGLRLQDGGAQFTLVTP 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     PLPG   V NAL AAGL +  GI   ++   L +   V GR      +S   
Sbjct: 278 QGEAQIALPLPGRHNVLNALAAAGLALGAGIALPIIAAGLAQARPVAGRQIAHTLSSGAV 337

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            I   Y     SL+  +  +     G   +V G   +
Sbjct: 338 LIDDSYNANPGSLDAAIDTLAA-APGAGWLVLGDMRE 373


>gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 14]
          Length = 272

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFA 157
               ++  
Sbjct: 138 AGNFNNDV 145


>gi|58700177|ref|ZP_00374680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58533307|gb|EAL57803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 95

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQD 460
           MGKIA   AD  I+TDDN R EDP KIR +I+   P  +E G R EAI   +++  N+  
Sbjct: 1   MGKIAQMYADKVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGM 60

Query: 461 VLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
           +L+VAGKG+E   I+ N       D ++I+ 
Sbjct: 61  ILLVAGKGNEKFQIIGNQT-FEFSDVEVIKN 90


>gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
 gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
          Length = 423

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 127/393 (32%), Gaps = 37/393 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +++DSR I    IF A+ G+  +G+ +   A+ +GA   +V     +            
Sbjct: 14  NITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGAAYAIVDEKEYVTSEQT------- 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V++  + L   A+    +    I+++TG++GK++    +  +  +   ++   G  +
Sbjct: 67  -ILVNDALESLQKLANYHRKQLNIPIISLTGSNGKTTTKELINAVLSKKFNTTATKGNLN 125

Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                      + + + I + +  +    +     S+    +G                T
Sbjct: 126 NHIGVPLTLLSMNSDTEIGIVEMGANHKREIAFLSSIAEPDYGY--------------IT 171

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L++ L   +    +  DD                  + 
Sbjct: 172 NFGKAHLEGFGGIEGVIIGKSELYDYLKASDKFIFVNGDD---------TKQVERTQDAN 222

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            Y         +          +S           L G +   N   A  +     ++S 
Sbjct: 223 TYVFGGSDTYDLSIEFLTANPMVSCAVDGKKIQSQLIGSYNFSNIAAAIAIGTYFKVNSD 282

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E +E       R + +  N     I   Y     S++  L N   +T    I   G 
Sbjct: 283 DIKEAIEAYIPSNNRSQILTKN-TNKIILDAYNANPTSMKAALDNFSDLTDTSKIAFLGD 341

Query: 391 G---GDRDQGKRPIMGKIALDL-ADIAIVTDDN 419
               GD  + +   +   A  L  +   +  +N
Sbjct: 342 MFELGDSAKEEHQFINDYAASLEIEKIYLIGEN 374


>gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 471

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 150/471 (31%), Gaps = 38/471 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V  DSR ++ G +F A  G++ DGH +   
Sbjct: 1   MIALSLAEIAEIVGGQSHDIPDPATPVTGPVVIDSRAVEPGSLFAAFRGDRVDGHDYAE- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       AT     P +VVD+ +  L   A  +  +    ++A+TG
Sbjct: 60  ----------QAVAAGAAAVLATRPLGVPAIVVDDVQSALGRLARFVVERLGTKVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQVLQRKGPTVWTPGSLNNEIGLPLTALRATEE-------------TEH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF---EELLP 239
             + + A   G  ++  +      G   N+G  HI     ++    AK  +         
Sbjct: 157 LVLEMGARGIGHIRYLTELTPPRIGLVLNVGTAHIGEFGGREQIAQAKGEMVESLPPAGE 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A++ ADD   + +  R                     ++  +  +   T+      
Sbjct: 217 DGGVAVLNADDPLVRAMASRTKARVLLFGEADDAAVRAENVRLTELG-QPTFTLHTPTGC 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRI 358
            D    L GE  V NAL AA +   + + ++ +   L +       R E          +
Sbjct: 276 SDVTMRLYGEHHVSNALAAAAVAHELDMSASEIALALSEADTLSRWRMEVTERPDGVTVV 335

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIA 413
              Y     S+   L+ +  +  GR    V G     GD    +   +G++A+ L     
Sbjct: 336 NDAYNANPESMRAALRALAAMGKGRRTWAVLGQMAELGDEALVEHDAVGRLAVRLNVGKL 395

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       S        E   G        +   A+      L   DV++V
Sbjct: 396 VAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRRELRPGDVVLV 445


>gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thiomicrospira crunogena XCL-2]
 gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 474

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 137/393 (34%), Gaps = 36/393 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L DL+      L  +L    +         VS+D+R +++G +++AI G   DGH FI 
Sbjct: 4   NLADLVEAVNGVLAGEL----LGDEPVVFTSVSTDTRTLKSGALYIAIKGEHFDGHAFIG 59

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AV 120
           +A+ QGA A+++S                P ++VD+TR     FA+    +     L  V
Sbjct: 60  EAVRQGAVAVLISEPMETV---------VPAVLVDDTRIAFGQFAAWHRQQMSLKGLVGV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG++GK++  + +  I  +        G   +          L+T     + +  +    
Sbjct: 111 TGSNGKTTTKALLAHILSKQAQVLSTQGNLNNDYGLPRTLLELSTSDDYAVIEMGANHVK 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                          +   L  I     +   L                       + + 
Sbjct: 171 ---------------EIAYLTQIAKPDVAVITLAAGAHLEGFGSLEGVIETKGEILDGVC 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK 298
           +   A++  D    +  ++++   G  V++ G      + +       N+   T+ +  +
Sbjct: 216 EGGKAVLNTDSPGFEYWIEKSQQLGLSVITFGQARFANVQVTDFTQAENQITFTLDLNWQ 275

Query: 299 DFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +         P+ G     NA  A   C+A+G+  + +   L     V GR +      +
Sbjct: 276 NIRQAEVVTMPVLGFHNAMNAAAATAACLALGLSWSEIYPGLGDFDGVAGRLQQSK-LPQ 334

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           G  I   Y    +S++  +  +  +     + +
Sbjct: 335 GLLIDDSYNANPSSVKAAIDALVQLPGPSAVCL 367


>gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
          Length = 457

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 75/485 (15%), Positives = 153/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAVVTLSEKEVA----------NHPYILVDDVLTAFQTLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +              +     AK ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPAD----SIVEDYLPTDKKVVRFGPGAE---LEITDLVERKNSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVVD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKKVKESLGANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
 gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
          Length = 449

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 142/450 (31%), Gaps = 41/450 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E     V  DSR I+   +FV + G + DGH F  QA   GA A + S        +  
Sbjct: 18  NETPFASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWS------HPTIE 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +  ++ V +T K     A     K    I+ +TG++GK++    V+ +  +   +  
Sbjct: 71  PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYK 130

Query: 146 QIGP----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G          +       T    + +    +            +A++  L       
Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITL------- 183

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                        +++   +             ++      PA     + +   + +   
Sbjct: 184 -------IGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNLTQTIE 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G     +          +          T+           P+ G + V NAL+A G+
Sbjct: 237 TFGLTEGDLQGDIVEESQDQTIFTVAGTTFTL-----------PVLGGYNVKNALIAIGI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
               G+    + E L    +   R ++V   +    +   Y     ++ ++L + R +  
Sbjct: 286 GRHFGVADEAIKEGLAHFQLTKNRTQWVTAGNGAAILSDIYNANPTAMGLVLDSFRKLPL 345

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD--IAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +GR I V     +       +  ++A  L D    +           +++    +     
Sbjct: 346 AGRRIAVLADMLELGPDSAQMHEQMAAHLDDSFQLVFLYGKEMQALQKRLANTALADKVR 405

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +     + + I + IE L   D LV+  KG
Sbjct: 406 YFAIDEKPQLIASLIETLEPSDSLVI--KG 433


>gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
 gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
          Length = 425

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 153/441 (34%), Gaps = 48/441 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I+   +F A+ G+  +G+ +  +A+ +GA   +V                   
Sbjct: 16  VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGASYSIVDEEKYATSDKT-------- 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +  + L   A+     +   ++ +TG++GK++    V  +      +   IG  + 
Sbjct: 68  ILVKDVLQTLQKLATFHRNFYSAKVIGLTGSNGKTTTKELVNAVLSSKYKTIATIGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                    LT      +A      + Q         +            +   G  TN 
Sbjct: 128 H-IGVPLTLLTIKEDTEIAIVEMGANHQKEIEFLCSLA------------QPDYGYITNF 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ LL  +    + ADD    + +      G  +   G+
Sbjct: 175 GKAHLEGFGSVEGVIEGKSELYDYLLANQKSIFLNADDPIQHKKL------GHYIKKYGF 228

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   K+  + +   V++S   +D +    L G +   N   A  +     ++   +
Sbjct: 229 TTAKKEYFKIKFLISDPYVSLS--VEDIEINSKLIGNYNFTNCCAAVLMGKYFNVELNDI 286

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
              +E       R +     S G RI +D Y     S+++ L+N  +++    I   G  
Sbjct: 287 KTAIESYIPQNNRSQI--IESNGTRIILDAYNANPTSMKVALENFNSLSGEPKIAFLGDM 344

Query: 392 GDRDQGKRPIMGKIALDLADI----AIVTDDN-----------PRSEDPEKIRAEI-IHG 435
            +           IA   + +      +  DN              E      A++ +  
Sbjct: 345 FELGATSNEEHQNIADLTSSLDISEVFLVGDNFYRTKTPLKKFKNYEALALYLADVELPS 404

Query: 436 IPGFIEKGNRIEAIRTAIEML 456
               + KG+R  A+   +E+L
Sbjct: 405 NSTILIKGSRGMALERLLELL 425


>gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
 gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
          Length = 457

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 145/389 (37%), Gaps = 31/389 (7%)

Query: 6   LIYKDFPELINQL-SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     EL + +         ER    V +D+R    G +FVA+ G + D H  +  A 
Sbjct: 1   MIRMTGQELADAVRGRLENGDGERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHV--AA 58

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A  ++V     +           P +VV +T + L   A     +    ++A+TG++
Sbjct: 59  DLPAAVLLVERVLDVPH---------PQVVVADTGEALGRLAQHWRRRSRARVIALTGSN 109

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    ++ I +  G      G  +               P+ L    +         
Sbjct: 110 GKTTTKEMLRCILEGVGSVHATQGNLN----------NEIGVPLTLL---AMPEDTDYAV 156

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+  G         + +    TN GR H++   + +   +AK  +F  L  +   A
Sbjct: 157 IEMGANHAGEIGRMARWTEPMVAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTA 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I  DD ++   +    +  C+  S+   G+   + +        ++ +++ G   D   
Sbjct: 217 VINLDDPFADYWLSLNEHHHCQRFSLEGGGEIEGVWQA-----PDRLRLTILGAGRDLRL 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG     NA+ AA    A+G+    +   L     V GR + +   S        Y  
Sbjct: 272 ASPGRHVAANAIAAAAAANAVGVAIDAIANGLAGWTPVQGRLQELWHVSGARLWDDTYNA 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             +SL   L+ +  +  GR I+V G  G+
Sbjct: 332 NPDSLRAGLEVLAAM-PGRRILVLGAMGE 359


>gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
 gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
          Length = 509

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 138/429 (32%), Gaps = 54/429 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS              + 
Sbjct: 27  SNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAVAAIVSE---------GKYKSF 77

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++V +T K L   AS           ++AVTG+ GK++    +  +  + G+S    G
Sbjct: 78  PLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHASEG 137

Query: 149 PTSTI----------------------------------SSFAQDNRLTTPSP--IYLAK 172
             +                                     S      +T   P       
Sbjct: 138 NLNNNIGLPLTILKAPKNCQYLILEMGMNKVGEIKELSKISNPNIAVITNIEPAHTENFS 197

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +L  ++   +  +    ++  L   R +       S  N         +  +      +R
Sbjct: 198 SLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIR 257

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             E  +     ++I   D           +                +      +      
Sbjct: 258 NDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKI 317

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              + +  +    + GE   Y+ L  A +  ++G+D + +   L+   V  GR       
Sbjct: 318 RLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVK 377

Query: 353 SRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
                I+     Y  +  S++  +K + T ++ R + + G     GD        + KI 
Sbjct: 378 CNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELGDESIEFHTDLVKII 437

Query: 407 -LDLADIAI 414
             +  D   
Sbjct: 438 TENNIDKVY 446


>gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
 gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
          Length = 477

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 120/363 (33%), Gaps = 18/363 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR +  G +FVA+ G + DGH F+    A GA   VVSS +  Q  S         
Sbjct: 32  VVIDSRKVVEGAVFVALPGERTDGHRFVGAVFANGASWAVVSSEWFSQHGSEHRGEGRRF 91

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LV D+        A+    +    ++ + G++GK++    V  +   +       G    
Sbjct: 92  LVADDPVAAFQQLATAYRERFDIPVIGIGGSNGKTTTKEMVAAVLSTAFKVRVTQGN--- 148

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L +         +  + +  +  G         +   G  TN+
Sbjct: 149 -------YNNHLGVPLTLFQLRRD---TEMAVIEMGINHPGEMAFLASIARPTHGLLTNI 198

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++  +      A+  LF+ L      A +  DD              C     G 
Sbjct: 199 GHEHLEFFGSLDGVAKAEAELFDYLEVSGGTAFVNLDDHRLAAAGASLSRKICYGAVPGE 258

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +   +       +   T+  E            G   V NA+ AA +    G+    
Sbjct: 259 PCAWWAEEVGSDRVGRIAFTLCSEAGIRQPVAMNFIGRHNVTNAVAAAAVGAHFGLAPEQ 318

Query: 332 VLEHLEKLHV--VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVF 388
           +   L +L       R E +        +   Y    +S+ + L  + ++   GR + V 
Sbjct: 319 IASGLGELMPASGWKRMELLEAGGV-VVLNDTYNANPDSVRLALDTLASLDCSGRKLAVI 377

Query: 389 GCG 391
           G  
Sbjct: 378 GDM 380


>gi|158834068|gb|ABW81839.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa]
          Length = 258

 Score =  110 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 121/252 (48%), Gaps = 3/252 (1%)

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            TT S I + + LS + +   T  ++E SSH L QHR+  +   A  FTNLGRDH+DYH 
Sbjct: 8   NTTASAIEVQQILSNMLAHKATFAAMEVSSHALVQHRVAALTFAATVFTNLGRDHLDYHG 67

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIY--ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               Y  AK  LF     K+    +       +  ++      +    +  G+QG ++  
Sbjct: 68  DMVTYEAAKKSLFFGHESKKHIINVDDEVGQRWLPQLPNAVAVSTAHHIPSGWQGAWLSA 127

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K+    N   +         +    L G F V N L+     +A+      +L+   KL
Sbjct: 128 QKIQYHENGALIFFDSSWGKGELQSQLLGAFNVNNILLTLATLLALKYPLDALLKAASKL 187

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +PGR E      R   + VDYAHT ++L+  L   R    G++  +FGCGGDRD+GKR
Sbjct: 188 QPIPGRMEVFKKVGRPT-VIVDYAHTPDALKQALAASRMHCQGKLWCLFGCGGDRDKGKR 246

Query: 400 PIMGKIALDLAD 411
           P+MGKIA  LAD
Sbjct: 247 PLMGKIAETLAD 258


>gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF)
           [Rickettsia prowazekii str. Madrid E]
 gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-
           2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF)
           [Rickettsia prowazekii]
 gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           prowazekii Rp22]
          Length = 449

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 124/363 (34%), Gaps = 25/363 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH +I  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++V+N+ + L   A           +A+TG+ GK+S    ++ + Q   +     G  
Sbjct: 76  -IILVNNSFEALQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQHDFIVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                + L   L+ ++      +     +H  +   L  I     +  
Sbjct: 135 NNY--------------LGLLINLASMADDTEYAIFELGMNHQGEISELVQILKPNIAMI 180

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N   +                    +   K   AII A +    +++    N     +  
Sbjct: 181 NNISEAHLEFFHSLEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILKNLSITNIYS 240

Query: 271 GYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                    K +       +  +   +  K  D   P        N      +   +G D
Sbjct: 241 FGHSSKASAKLILYKTLGEQVHLQYYINNKFIDITIPFIPRHFANNYTGVLLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +  ++L  + +  GR   +        I   Y  +  S++  L+ ++ + +     + 
Sbjct: 301 IEISAKYLADIALTKGR-GKIINIQNSRVICDYYNASPQSMKAALEYLKQVPADNKTSII 359

Query: 389 GCG 391
           G  
Sbjct: 360 GEM 362


>gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
 gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
          Length = 428

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 135/383 (35%), Gaps = 35/383 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+DSR I++  I+ A+ G + +G+ F   A+  GA   VV +A              
Sbjct: 14  KSVSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVDAAKYKDHPG------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + V +  K L    +         ++++TG++GK++    + ++  +   +S  +G  
Sbjct: 67  -CIYVADVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNL 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
                   +N +  P  +   K  +  +   +       ++H  +   L  + +   G  
Sbjct: 126 --------NNHIGVPLSLLNIKESTEFAVIEMG------ANHQKEIEFLCALAQPDFGCI 171

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++     Q     K  L++ L+      +   +D      +++  ++      
Sbjct: 172 TNFGKAHLEGFGGVQGVIKGKSELYQYLIANNKTILYNNEDPIQAGALRQYDHSISFGKD 231

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    LK           ++ ++ +D      L G +   N ++AA +     +  
Sbjct: 232 QESTYTTSILKS--------NTSVKIQFQDTTINTSLYGAYNATNCMIAASIGRHFDVPI 283

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIV 386
             +   +E       R E          +   Y    +S+E+ +K+   +T       IV
Sbjct: 284 QDIKNAIESYKPNNNRSELRQIGPH-MLVLDAYNANPSSMEVAIKHFSELTHSSLKNKIV 342

Query: 387 VFGCGGDRDQGKRPIMGKIALDL 409
           V G   +  +        I   L
Sbjct: 343 VLGDMFELGETAAKEHQAIVAQL 365


>gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 437

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 154/395 (38%), Gaps = 22/395 (5%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I   +   +   +  I+ V +D+R + +G ++VA+ G + DGH F   A+A+GA  ++V 
Sbjct: 2   IAHFAGGELHGDDAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLLVD 61

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                         + P +VV NT   L+  A+ +       ++A+TG++GK+SV + + 
Sbjct: 62  R--------LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLL 113

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I   +G      G T+  +   ++N +  P  +  A   + L+        + A   G 
Sbjct: 114 AILAEAG---RVDGITAYANPGNRNNEIGLPLAVIAAPDDADLA-----VYEMGAGKPGD 165

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
             +  D  +       N+   H++   +       K  ++   LP +  A+I ADDA+  
Sbjct: 166 IAYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTA-LPADGVAVINADDAFGA 224

Query: 255 EVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              ++      +   V   G      I  +++       Q  ++    +   + PLPG  
Sbjct: 225 WFEQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL A GL +  GI   ++   L +   V GR +   T + G  +  D  + +    
Sbjct: 285 NVLNALAATGLALGAGIALPIIAAGLAQATQVAGR-QIAHTLATGAVLIDDSYNANPGSL 343

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
               +      G   +V G   +       +    
Sbjct: 344 DAAIDALAAAPGEGWLVLGDMRELGPEAPALHAAA 378


>gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
 gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
          Length = 467

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 125/359 (34%), Gaps = 30/359 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +I  + +DSR  +AG  F+A+ G + D H FI Q  AQG E  +VS              
Sbjct: 36  QIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQGCEIAIVSRPVDA--------- 86

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +   LVV++TR  L    +    ++P+  ++A+TG+SGK++    +  I  R   +    
Sbjct: 87  DICQLVVEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTLVTR 146

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +             P                   + + AS  G   +    ++    
Sbjct: 147 GNLNNDLGVPVMLLELRPE-------------HQYAVMELGASHQGEIDYTSKMVQPHVA 193

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+     +     AK  ++  +          A D +++ +           
Sbjct: 194 GIINIGTAHLGEFGGRDGICRAKSEIYAHISETSII---PAADDFAEVIRAAVRTEKSLS 250

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G     ++   V         T++          P  GE  V NA  AA   +AIGI
Sbjct: 251 FGAG---GEVYASDVVLEAQSSSFTLNTPQGSKTVQLPFAGEHNVENATAAAAFALAIGI 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
               ++  LE+     GR  F+        I   Y     S+    + +      R++V
Sbjct: 308 GLDDIVAGLEQAVGAKGRLNFIPHKDY-LFIDDTYNANPGSMRAAAEVLAQQQGIRVMV 365


>gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 513

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 75/483 (15%), Positives = 146/483 (30%), Gaps = 39/483 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q         +       SDSR ++ G +FVAI G + DGH F+ +A   GA   +V
Sbjct: 18  IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 77

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128
                              +VV +T   L L      A+R     P  ++ +TG+ GK++
Sbjct: 78  QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAAGTPFTLIGITGSVGKTT 128

Query: 129 VASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               +  +    G +   +G   + I       ++   +  ++A+  +    +     ++
Sbjct: 129 TKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGASHVGEITRLTTI 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                 +            GS   + +   +  Q       A +   +  +   +P    
Sbjct: 189 APPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDAHVAAMAPLAPQ 248

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               +       A  +     S      F    +              +G        + 
Sbjct: 249 GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLAIR 308

Query: 308 GEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363
           G   V NAL AA +   +G+    +      +  + P R         G         + 
Sbjct: 309 GTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDSFN 368

Query: 364 HTSNSLEMILKN---IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
              +S+   L      R+      I V G     G  +      +G+ A  L   A++  
Sbjct: 369 ANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIGEYAAGLPIDAVIAV 428

Query: 418 DNPRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNK-QDVLVVA 465
            N   E  + + + +  G            P      +  +A      +     D +V+ 
Sbjct: 429 GN-DDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVRALAGDHDDTVVLL 487

Query: 466 GKG 468
            KG
Sbjct: 488 -KG 489


>gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 432

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 136/376 (36%), Gaps = 22/376 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F  +A+  G+   +V       +       +T
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPEG------DT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +VV+N+ K L   A+    +    I+ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +             P                +  V + AS  G  +  ++  +   G  T
Sbjct: 128 NNHIGVPLTLLRLRPE-------------HDLAVVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  +++ L  ++   I   +D    + +    +        
Sbjct: 175 NVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSED 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G            + +   +     E K  +    L GE+   NAL A  +    G++  
Sbjct: 235 GLYINGHVTGN--SPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L        R +   T      I   Y     S+   + N R + +   +++ G 
Sbjct: 293 KIDKALAGYTPQNNRSQLKKTA-DNTLIIDAYNANPTSMMASISNFRNMQAENKMLILGD 351

Query: 391 GGDRDQGKRPIMGKIA 406
             +  +       KIA
Sbjct: 352 MRELGKDSADEHQKIA 367


>gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase
           D-alanyl-D-alanine-adding enzyme;
           D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 459

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 55/396 (13%), Positives = 114/396 (28%), Gaps = 25/396 (6%)

Query: 18  LSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
           L          K   +S+ S+ IQ   +FV + G + DGH +I  A+  GA   +    +
Sbjct: 18  LKPVWENPMNPKFFWISTSSKEIQKNTLFVPLRGER-DGHEYIADALKAGATGFLCEKNH 76

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            +    +        + V +T   L   A+    +    ++A+TG+SGK+S    +  + 
Sbjct: 77  PILKNLSNEDQKKA-IFVKDTLIALGTLANFHRNRFCPIVIAITGSSGKTSTKDLLGGLF 135

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G  S  +           +N +  P  +             V    +  +  G    
Sbjct: 136 SFLGSKSLVVT------EKNYNNEIGVPFTL-----FRITERTQVVICEMGMNHRGEINR 184

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                +      TN+G  HI+  ++++     +       L       +  D  +     
Sbjct: 185 LSKMAEPTHALITNIGSAHIENLKSRENIA-EEKIDIINGLRPNGVLFVPDDLDFLGRAK 243

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +R   +   +    +         +   +        +E +     + +PG   + N   
Sbjct: 244 QRTKKSNVNLKIWKHSKNPELKVNIVQKNG-----FLLEWRMEKIQWNIPGSKLLSNVRG 298

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              +     I    + + +        R            I   Y     S+   +    
Sbjct: 299 MIAVGNFFQIPDVEMKKTIRTYKSPNKRLNIKK--GFYTIIDDSYNANPESMLSSIDASI 356

Query: 378 TITSGRIIVVF----GCGGDRDQGKRPIMGKIALDL 409
                + IV         G   +     +GK     
Sbjct: 357 QYAQNKPIVWVLGTMKELGKFSKFYHEEIGKNLKKY 392


>gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
          Length = 473

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 132/373 (35%), Gaps = 21/373 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++AG +FVA+ G + DGH ++ QA   GA  +VV               N P 
Sbjct: 43  VVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFCLVVEH--------VETGLNVPQ 94

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV+N+R+   L A     +    + AV G++GK++    ++ I                
Sbjct: 95  LVVENSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMKAILAAHWGVQNIHATEGN 154

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++            + L         +   +   E +         D I+      TN 
Sbjct: 155 FNNDVGVPHT----LLGLHCGCRAAVVEAGMNHRGEMARLA------DWIRPTVVLMTNA 204

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H  Y +T          L    LP +  A+  ADD  +      A   G R L+   
Sbjct: 205 QREHQAYLETVAEAAFENGLLIAA-LPNDGVAVYPADDPCADVWASYALARGVRTLTYAT 263

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   +   +  K    ++           + G   ++NA+ AA   +A  ID   +
Sbjct: 264 AEGVAADVRGELVPGKGLRLLAYGIDRVIG-LQVQGAHNIHNAVGAAAAALAQQIDVDAI 322

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E L     +PGR   + + +    I   Y    +S    +  +      R I +FG  G
Sbjct: 323 AEGLAAFKALPGRGARMASPAGFTLIDDAYNCNPDSAIASIAMLAEEKPAR-IFLFGDMG 381

Query: 393 DRDQGKRPIMGKI 405
           +  +       ++
Sbjct: 382 ELGRDAELWHAEV 394


>gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 303

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFA 157
               ++  
Sbjct: 138 AGNFNNDV 145


>gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
 gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
          Length = 476

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 155/456 (33%), Gaps = 45/456 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +QAG IFVA+   + DGH F+ QA+ +GA A +VS           +  + 
Sbjct: 24  TGVSIDTRTLQAGDIFVALSDVR-DGHDFVQQALDKGAAAALVS------HVPQGVPEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V + ++ L         +    ++AVTG+ GK+S    +  +    G +   +   
Sbjct: 77  PLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHASVASY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+         +        +H  +   L  +     +  
Sbjct: 137 NNHWGV----------PLTLARMPRDTEFAVIEIGM----NHPGEIAPLAKMAAPHVALI 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                              +     E +     AI+ AD   S  +M +A +   R ++ 
Sbjct: 183 TTVAAAHLEAFEDITGIAVEKASIFEGVVPNGVAILNADVETSAILMAKAQDCRLRDITF 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G  G    L +     +   V   +      +    PG     NAL A  +  A+  D A
Sbjct: 243 GEHGYDFKLMRADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNALGAVAVMAALRTDVA 302

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           L L  L +     GR +                 +D ++ +N   M         +    
Sbjct: 303 LALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAK--- 359

Query: 386 VVFGCGGDRDQGKR-PIMGKIALDLADIAIV---TDDNPRSEDPEKI--RAEIIHGIPGF 439
            V    G   +G+R   +G +     D   +       P +++ + I     ++  +   
Sbjct: 360 -VTNDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRALYDA 418

Query: 440 IEKGNR-------IEAIRTAIEMLNKQDVLVVAGKG 468
           + +  R        EA       ++  DV++   KG
Sbjct: 419 LPEPQRGTWFETAEEAATRVKTHIDSGDVVL--AKG 452


>gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 147

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 25/154 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---- 56
           MKL++L      +         +     KI  +  DSR I  G +F+ + G   DG    
Sbjct: 1   MKLKELANLLLVK-------ETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLED 51

Query: 57  -HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
            H F+  A+  GA A++V    +++          P ++V + R  +++ AS  YG    
Sbjct: 52  RHQFVEDAVKNGAVALIVERDVNIE---------IPKIIVKDARYAMAVIASHFYGYPSN 102

Query: 116 NI--LAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  + +TGT+GK++ +  +++I    G  +  +
Sbjct: 103 KMKLIGITGTNGKTTTSYLLEKILSDYGYHTGLM 136


>gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
 gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
          Length = 467

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 95/475 (20%), Positives = 155/475 (32%), Gaps = 44/475 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE-----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +I     E+   +    +   +       +  V +DSR   AG IF A+ G   DGHLF 
Sbjct: 1   MIELSIAEIAAAIGGELVDGTDGKRRLPPV-AVQTDSRLSTAGSIFFALRGETTDGHLFA 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA----SRLYGKHPEN 116
             A+  GA  IV   A  +         +   ++V++    L   A    +R+       
Sbjct: 60  HTAVENGATLIVAERALDI---------DVAQIIVNDGVTALQALARAVVARVRENGQLK 110

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAVTG++GK++  + ++ I +R G +    G  +            T S  YL      
Sbjct: 111 VLAVTGSNGKTTTKNMLRTILEREGETVAPKGSFNNDVGAPITMLGVTNSSKYL------ 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   V + A   G D  RL  I +       +            A           
Sbjct: 165 -------VVEMGADGIG-DITRLQSIVMPDVGIVLMVGLAHIGKFGDAATTALAKSEMVT 216

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP +S A++  DD   + +                    +   ++ A        + V 
Sbjct: 217 ALPPQSTAVLNYDDGRVRAMA--PQTEATVNFFGLDSHSDVWADEIEASARGTAFDLHVA 274

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRG 355
            +       + GE  V NAL A     A+GI        LE +      R E +      
Sbjct: 275 DEVVPVQLRILGEHHVTNALAAITAARALGIPVQRSAVALESIDRAERWRMELLEAPGGI 334

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409
             I   Y  + +S+   LK +  +     R + V G     G+    +   +G++ + L 
Sbjct: 335 TVINDAYNASPDSMAAALKTLVQVVGPENRSVAVLGEIAELGEYANEEHDRIGRLIVRLN 394

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               IV     R             G    +   N  EA     E L   DV++V
Sbjct: 395 VQKLIVVGHAARHIHNAAGLEGSWDG--ESVLVDNVEEAYAVLREELRGGDVVLV 447


>gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
 gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
          Length = 457

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/485 (15%), Positives = 147/485 (30%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +                  P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEVE----------GYPYILVDDVLSAFQTLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +              +     AK ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSKLAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G          +     K  +T      
Sbjct: 209 MAPDSLLLAPADP----IVEDYLPTDKKVVRFGQGADLEVTDLIE---RKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+ G++   NA++AA + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 GQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAILANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
 gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
          Length = 450

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 64/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV +VG + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLVGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              + P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
          Length = 465

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 90/451 (19%), Positives = 149/451 (33%), Gaps = 51/451 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS D+R IQ G +FVA+ G + DGH F+ QA  +GA  ++ S                P
Sbjct: 28  GVSIDTRTIQPGDLFVALAGVR-DGHEFVEQAFEKGAAGVIASRQVFG-----------P 75

Query: 92  ILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++V +T   L    A+           AVTG+ GK+SV   +      +G +   +   
Sbjct: 76  AVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGKTSVTQAIMAGLTLAGPAHSSVKS- 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL--DGIKLIAGS 208
                           P+ LA+     +         E   +  D+ R     ++  A  
Sbjct: 135 ---------YNNHIGVPLTLARMPRGTAR-----AVFEIGMNHADEIRPLSRMVRPHAVV 180

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +G  H +     +A          E L     A++ AD+ +   +   A  AG  V 
Sbjct: 181 ITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLLKGEAERAGATVR 240

Query: 269 SVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           + G  +     L           V   + GK  DF     G     N++    +  A+G+
Sbjct: 241 TFGTGEACDARLIDFQVPAGHAVVQARLHGKALDFPILQTGLHWGLNSMAVLLMLEALGV 300

Query: 328 DSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITS-GR 383
           D    L  L     + GR  E       G    +D  Y     S+   +  +    + GR
Sbjct: 301 DLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMASAIATLGARETAGR 360

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            IV        G   +     + +     A   +             +   +   +P   
Sbjct: 361 RIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLVFC--------AGPLMKSLWDALPPTR 412

Query: 441 EKGNRIEAIRTA---IEMLNKQDVLVVAGKG 468
             G    A   A   ++ +   DV++V  KG
Sbjct: 413 RGGYAESAAELAPQVVQAVEPGDVVMV--KG 441


>gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei BCC215]
          Length = 300

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSASPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFA 157
               ++  
Sbjct: 138 AGNFNNDV 145


>gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
 gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
          Length = 519

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 75/483 (15%), Positives = 146/483 (30%), Gaps = 39/483 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q         +       SDSR ++ G +FVAI G + DGH F+ +A   GA   +V
Sbjct: 24  IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 83

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128
                              +VV +T   L L      A+R     P  ++ +TG+ GK++
Sbjct: 84  QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRTVGTPFTLIGITGSVGKTT 134

Query: 129 VASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               +  +    G +   +G   + I       ++   +  ++A+  +    +     ++
Sbjct: 135 TKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGASHVGEITRLTTI 194

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                 +            GS   + +   +  Q       A +   +  +   +P    
Sbjct: 195 APPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDAHVATMAPLAPQ 254

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               +       A  +     S      F    +              +G        + 
Sbjct: 255 GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLAIR 314

Query: 308 GEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363
           G   V NAL AA +   +G+    +      +  + P R         G         + 
Sbjct: 315 GTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDSFN 374

Query: 364 HTSNSLEMILKN---IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
              +S+   L      R+      I V G     G  +      +G+ A  L   A++  
Sbjct: 375 ANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIGEYAAGLPIDAVIAV 434

Query: 418 DNPRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNK-QDVLVVA 465
            N   E  + + + +  G            P      +  +A      +     D +V+ 
Sbjct: 435 GN-DDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVRALAGDHDDTVVLL 493

Query: 466 GKG 468
            KG
Sbjct: 494 -KG 495


>gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 91]
          Length = 289

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFA 157
               ++  
Sbjct: 138 AGNFNNDV 145


>gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
 gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 432

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 154/419 (36%), Gaps = 34/419 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   +V  A  +         +T
Sbjct: 14  TGVTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAGSAYAIVDEAAYVPAG------DT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN+ + L   A+    +    I+ +TGT+GK++    +  +  R     +  G  
Sbjct: 68  HYILVDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L +  +      +  V + AS  G  +  ++  +   G  T
Sbjct: 128 N----------NPIGVPLTLLRLQAE---HDLGIVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  K    I    D      +    N        
Sbjct: 175 NVGKGHLEGFGSFEGVIRTKGELYDYLRQKGDSTIFIHQDNPYLTKLAWGLNPISYGEQD 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G            + +   +     EG   +    L GE+ + NAL A  +    G++  
Sbjct: 235 GLYVNGHVTGN--SPYLIFEWKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGVEPE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L +      R +   T      I   Y     S+   + N   + +G+ +++ G 
Sbjct: 293 KIDQALNEYEPRNNRSQLKKTA-DNTLIIDAYNANPTSMLASISNFHNMQAGQKMLILGD 351

Query: 391 GGDRDQGKRPIMGKIA-----LDLADIAIV------TDDN-PRSEDPEKIRAEIIHGIP 437
             +  +       KI       D  D+A+V      T  N P   D   + AE+    P
Sbjct: 352 MRELGKDSPEEHQKIVDYLEKCDFKDVALVGELFAATRHNYPTYPDAPALIAELQKNKP 410


>gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
 gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
          Length = 470

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 21  MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 71

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              + P++ V +  K +   A+    K    ++A+
Sbjct: 72  QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 126 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 185


>gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
 gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
          Length = 450

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              + P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
 gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
          Length = 450

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              + P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
          Length = 450

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              + P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
 gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
          Length = 459

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 94/443 (21%), Positives = 160/443 (36%), Gaps = 33/443 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +   N V++D+R +  G +FVA+ G   DGH F+ +A  QGA A VV             
Sbjct: 25  KLTFNAVNTDTRSLLPGQLFVALRGENFDGHRFLQKAQEQGASAAVVDC--------IDA 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P L+V +T   L   A+R        ++A+TG+SGK++V      I Q+ G +   
Sbjct: 77  AVDLPQLLVSDTLIALGELATRHRATSNATLIAITGSSGKTTVREMTGAILQQMGPALIT 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +               P+ L              + + AS      + +  +K   
Sbjct: 137 QGNLNNH----------IGVPLTLFGLAPEHRFGA---IELGASGLNEIAYTVAMVKPQV 183

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN G+ H++   + Q    AK  + + +       +   D A+ + +++        
Sbjct: 184 AILTNAGQAHLEGFGSYQNIVLAKGEIIDGVADDGLVVLNRDDPAFDQWLVRAGRRRVAS 243

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V   G+ G      KV A    Q      +G   D    L GE  + NA +AA     +G
Sbjct: 244 VSRAGHAGAD---YKVIAGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMAAAAARELG 300

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +  +   LE++  V GR            I   Y     S++  L  +    S R I 
Sbjct: 301 ATNEHIKAGLEQVLAVKGRLHIQPLAQGWTLIDDSYNANPASIKAALAVLAKRPSPR-IA 359

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNR 445
           V G   +  +    +  ++A    D+ I      R             G    +E   + 
Sbjct: 360 VLGAMAELGEQAAQLHREVAQYARDLGI-----ERLLAVGPGCEGYGRGFGATVEICASH 414

Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468
            +AI   ++       ++V  KG
Sbjct: 415 DQAINAVLKNTQVPATVLV--KG 435


>gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 509

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 137/429 (31%), Gaps = 54/429 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A  G   DGH F+ +A  +GA A +VS              + 
Sbjct: 27  SNISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKGAIAAIVSE---------GKYKSF 77

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+++V +T K L   AS           ++AVTG+ GK++    +  +  + G+S    G
Sbjct: 78  PLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTTKDMLHTVLSQYGVSHANEG 137

Query: 149 PTSTI----------------------------------SSFAQDNRLTTPSP--IYLAK 172
             +                                     S      +T   P       
Sbjct: 138 NLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFS 197

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +L  ++   +  +    ++  L   R +       S  N         +  +      +R
Sbjct: 198 SLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIR 257

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             E  +     ++I   D           +                +      +      
Sbjct: 258 NDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKI 317

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              + +  +    + GE   Y+ L  A +  ++G+D + +   L+   V  GR       
Sbjct: 318 RLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVK 377

Query: 353 SRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
                I+     Y  +  S++  +K + T ++ R + + G     GD        + KI 
Sbjct: 378 CNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRKVALLGDMLELGDESIEFHTDLVKII 437

Query: 407 -LDLADIAI 414
             +  D   
Sbjct: 438 TENNIDKVY 446


>gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
 gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
          Length = 455

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 129/408 (31%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR IQ G +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSENKPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCAALKGALKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R       +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S+   +  +
Sbjct: 291 AAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMRAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDN 397


>gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 75/483 (15%), Positives = 146/483 (30%), Gaps = 39/483 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q         +       SDSR ++ G +FVAI G + DGH F+ +A   GA   +V
Sbjct: 24  IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 83

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128
                              +VV +T   L L      A+R     P  ++ +TG+ GK++
Sbjct: 84  QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAAGTPFTLIGITGSVGKTT 134

Query: 129 VASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               +  +    G +   +G   + I       ++   +  ++A+  +    +     ++
Sbjct: 135 TKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGASHVGEITRLTTI 194

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                 +            GS   + +   +  Q       A +   +  +   +P    
Sbjct: 195 APPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDAHVAAMAPLAPQ 254

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               +       A  +     S      F    +              +G        + 
Sbjct: 255 GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLAIR 314

Query: 308 GEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363
           G   V NAL AA +   +G+    +      +  + P R         G         + 
Sbjct: 315 GTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDSFN 374

Query: 364 HTSNSLEMILKN---IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
              +S+   L      R+      I V G     G  +      +G+ A  L   A++  
Sbjct: 375 ANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIGEYAAGLPIDAVIAV 434

Query: 418 DNPRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNK-QDVLVVA 465
            N   E  + + + +  G            P      +  +A      +     D +V+ 
Sbjct: 435 GN-DDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVRALAGDHDDTVVLL 493

Query: 466 GKG 468
            KG
Sbjct: 494 -KG 495


>gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 457

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 148/476 (31%), Gaps = 46/476 (9%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +++  +        +      +  DSR      +F+AI G   DGH F+P  + +G 
Sbjct: 7   EIKDVLGDIKNLGEGGIDSLNFKNICIDSRTCLKNDLFIAIKGKNFDGHNFLPDVLNKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +++V+      +     +  N P  VV +T             K    ++A+TG+ GK++
Sbjct: 67  KSVVI-----KEGMQKLLPDNFPCWVVSDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               V ++  + G         +           T                     + +E
Sbjct: 122 TKEMVGEVLNKLGKIKLSHANFNNEIGVGLTILATDKE---------------DKVLVLE 166

Query: 189 ASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               GL Q  +     K      TN+G  HI    +++    AK  + + L PK    I 
Sbjct: 167 MGMRGLGQIENLSKYSKPDIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIP 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDFLFP 305
             D    + + +       +V  +  + +     K             ++  ++  F   
Sbjct: 227 ANDLLLEETLREYWKGRVTKVELLNIENQNDSFKKDNNLRGFYNPSNKTILIEENIFEIS 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G     N L+A  +   +GID     +          +   +  + +       Y  +
Sbjct: 287 FEGFHNASNFLLAYAVAKELGIDFESFNKFDFVSLGGRNK---ILKSVKTTIYDESYNAS 343

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S++  +K +      +   +FG            +G+ +           +N   E  
Sbjct: 344 PESVKACIKTLLEKPRNKF-FIFGSMQ--------ELGEESEKFHKEIFNLINNSDIEKC 394

Query: 426 EKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
             I  +    I          F+   N  +  +   +   K D +++  KG  +  
Sbjct: 395 LFICDKKNKKIYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILI--KGSRSWQ 448


>gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 297

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFA 157
               ++  
Sbjct: 138 AGNFNNDV 145


>gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
          Length = 298

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFA 157
               ++  
Sbjct: 138 AGNFNNDV 145


>gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 466

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 139/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+    I   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDD----FTAEIREA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +     G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ L +     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLAQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
 gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
          Length = 449

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 156/475 (32%), Gaps = 49/475 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+     +      +  I+ +  DSR +    +FV + G + DGH F 
Sbjct: 1   MNLS------IKEVAALFGVECAD--QTMISSIEFDSRLVTTDSLFVPLAGTR-DGHEFA 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA  +GA A   S        +        I+ V +T       A     K    ++A+
Sbjct: 52  QQAQEKGAIAAFWS------HPTIQPPEGLMIIEVSDTLAAFQKLAKFYKEKLAPKVIAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +   +    G          +N +  P  I     L   +  
Sbjct: 106 TGSNGKTTTKDMVDAVVAQQFKTYKTQGN--------HNNEIGLPLTI-----LHAPADT 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +     G  +      +    + T +G  HI+   +++    AKM +   L P 
Sbjct: 153 EVLVLEMGMDHAGEIEVLSHLAQPDVAAITLIGEAHIENLGSREGIAKAKMEITAGLDPA 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I   +   +  + +         L  G     I  +            +       
Sbjct: 213 GFFMIPADEPLLTPYLAELTQQVETFGLGEGNLKGTIQEETQEQTAFTVADQV------- 265

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  P+ G + V NAL+A G+   +GI+   +   L    +   R +++   +    +  
Sbjct: 266 -YTIPVIGGYNVKNALIAIGIGRYLGIEEEKIKAGLADFQLTKNRTQWLKAANGAAILSD 324

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y     ++ ++L + R +  +GR I V       G         M     +  D+  + 
Sbjct: 325 VYNANPTAMGLVLDSFRKLPLTGRRIAVLADMLELGPDSAKMHAGMADHLDERFDLIFL- 383

Query: 417 DDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAGKG 468
                SE     RA +               +A  I    + L   D +V+  KG
Sbjct: 384 ---YGSEMQALKRALDQSRLADRVHFFSKEEKAALITQLQKELQPTDSIVL--KG 433


>gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 7894]
 gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 289

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+    A+GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   +     ++  
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAAVGEHARLAT 137

Query: 150 TSTISSFA 157
               ++  
Sbjct: 138 AGNFNNDV 145


>gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
 gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
          Length = 472

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 155/452 (34%), Gaps = 34/452 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           + + + + V+ DSR +  G +F+A+ G   DGH F+ +           + A        
Sbjct: 20  YGDFRTDGVTFDSREVGPGDLFIALKGETTDGHRFLDK-----------AFAAGAAGAIV 68

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           +   + P + V +T   L    +    +    ++ VTG+ GK+     +     R+    
Sbjct: 69  SDACDGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGKTGTKEALYACLDRA---- 124

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                   +    +     T  P+ LA+  +         + +  S       RL  ++ 
Sbjct: 125 ----LPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFE-MGMNHSGELAALTRL--VRP 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                T +   H  +  ++    +AK  +F+ L P     I Y      + +     +A 
Sbjct: 178 HVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQPGGVAIIPYDSPHRDRLIAAAKPHAA 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +     +   +H + V  +     +++ +   +  F    PGE  V NA+       A
Sbjct: 238 RILTFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAMAVIAAVWA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEF------VGTNSRGGRIYVD--YAHTSNSLEMILKNI 376
           +G D A       ++  +PGR +        G    G  + +D  Y     S+   +K +
Sbjct: 298 VGGDLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPASMAATIKML 357

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
               + R + V G   +   G       +A  L D  +       SE      A  + G 
Sbjct: 358 GRERADRRLAVLGEMRELGAGSAGYHADLAGPLRDAGVDFALLVGSEMAA--LANALEGR 415

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             F    +   AI +    +   D +++  KG
Sbjct: 416 IEFEHVPDADAAIESIEAKIAPGDAILI--KG 445


>gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
 gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
          Length = 464

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 150/401 (37%), Gaps = 22/401 (5%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +    LI   +   +   +  I+ VS+D+R +  G ++VA+ G + DGH F   A A+G
Sbjct: 2   KRTLLSLIAHWAGGEIHGDDVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQARG 61

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++V            +    P ++V ++   L+  A+ +       + A+TG++GK+
Sbjct: 62  ASALLVER---------LLPIELPQVLVADSELALAKIATGMQRDRETEVFAITGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           SV S +  I Q+    + +       +   ++N +  P  +  A   +  +        +
Sbjct: 113 SVKSLLLSILQQVAQHAHK---VVYANPGNRNNEIGLPLAVIDAPEDADYA-----VYEM 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A   G   +  D  +       N+   H++   +               LP +  A+I 
Sbjct: 165 GAGKPGDIAYLTDIARPRYALVNNIAPAHLERMGSL-LGVAVTKGAIYAALPADGVAVIN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            DDAY +   +       R   + Y       I  + + A     Q T+     +   + 
Sbjct: 224 VDDAYGRWFEQHFVGTPARCRVLRYGLEHTADITARDIRAGAQGSQFTLVSPMGEARVVL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V NAL AA L +A G+D AL+   L +   VPGR +       G  +  D  +
Sbjct: 284 GLPGRHNVSNALAAASLALAAGVDLALIAAGLAEAQPVPGR-QIAHQLRNGAVLVDDSYN 342

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            +        +          +V G   +       +  + 
Sbjct: 343 ANPGSLAAAIDALAAAPEEGWLVLGDMRELGPDAEALHAQA 383


>gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 463

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 155/480 (32%), Gaps = 53/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                  P  +          
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +   RL                             A+ ++       
Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G    +       +K  +T +      
Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +  +    +  ++   L     D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +   D+ +  +  ++ +++            E+ ++ EA+   ++  LN  D +++  KG
Sbjct: 384 VFYGDHIK--ELARLASQVYSAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439


>gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
 gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
          Length = 450

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              N P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
 gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
          Length = 450

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              N P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
          Length = 450

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              N P++ V +  K +   A+    K    ++A+
Sbjct: 52  QQAITNGASASFWSLPVE------QAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 106 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 165


>gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium DO]
 gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
 gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
          Length = 470

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 19/180 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L         E+   +          KI  V  DSR I  G +FV + G + DGH FI
Sbjct: 21  MNL------TIQEIAQAVGSECSAL--TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFI 71

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI  GA A   S              N P++ V +  K +   A+    K    ++A+
Sbjct: 72  QQAITNGASASFWSLPVE------QAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAI 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIG----PTSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++       +      +    G          +     + T    + +    + 
Sbjct: 126 TGSNGKTTTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHAN 185


>gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK49]
          Length = 456

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 158/481 (32%), Gaps = 55/481 (11%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENIALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +                    ++VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSERPVVEGA----------YILVDDVLTAFQRLAQYYLKKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFDCNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+  A + +   +L +   R E+    +    +
Sbjct: 262 EQSIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR +VV     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLVVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467
           TD     +D E +     EI   G   +  K +     E ++ A+   L   D +++  K
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVQYFVKNDEKDQFEQLKQAVREKLTPADQILL--K 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
 gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
          Length = 469

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 130/384 (33%), Gaps = 26/384 (6%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
            + +SSD+R +Q G +FVA+ G   D +L++ QA+  GA  I+ S   +           
Sbjct: 32  FHSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTAGASGILCSRPPAQSLP------- 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+ VV +    ++  A           + +TG+SGK++V   +  I      +    G 
Sbjct: 85  IPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSSGKTTVKEMLGLIVSSRYRTGITRGN 144

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ L    S    +    + +  S+ G   H  +  +   G  
Sbjct: 145 LNNH----------IGLPLTLLNCPSD---RTHLVLEMGMSAPGEIAHLAELAQPQIGIV 191

Query: 210 TNLGRDHIDYH-----QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           TN+   H+         +             + LP +  A++ A D +   +      A 
Sbjct: 192 TNILAAHVAGFGGGNLVSALRGIAHAKGELLQALPHDGLAVLPAIDPHLALLQSLTGCAI 251

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                       +               I   G+ F    P  G     NA+ A      
Sbjct: 252 LSFGPQSSGADVVFTPPSYGDDGMLSTLILPNGERFALNLPGFGPHLWLNAVAACAAAYG 311

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383
           +G+D+A + E L +  +  GR            +   Y     ++ + L+ +  +  + +
Sbjct: 312 LGLDAAAMQEGLSRFKLQKGRGSVEHGQVGCRILNDTYNANVGAMRVALEALSHMAPAPQ 371

Query: 384 IIVVFGCGGDRDQGKRPIMGKIAL 407
            I V G   +  +    +  ++A 
Sbjct: 372 RIAVLGDMLELGEAADTLHAELAQ 395


>gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
 gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
          Length = 457

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 152/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + +  + +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVARVVGAKNDVTGYADSPLVKAEFDSRLIGPGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          + P ++V++        A+    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEQEVA----------DHPYILVEDVLTAFQALAAYYLQKTGVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +              +     AK +L     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKLQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   ++   D   ++ +            V   G    L+       K  +T+     
Sbjct: 209 MEKGSLLLAPADPIVEDYL-------PTEQKVVRFGPGAELEITELTERKDSLTLKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EKSLDLPVTGKYNATNAMIASYVALQEGVTEEQIGQAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ + V       GD+       M   ++ D  D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKLAVLADMKELGDQSVQLHNQMILSLSSDALD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEA-IRTAIEMLNKQDVLV 463
             I        ED   +        P           + ++ EA ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIADLAQLASQMFPIGHVYYFKKTAEEDQFEAMVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
 gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
          Length = 460

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 152/406 (37%), Gaps = 33/406 (8%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   E+   +   I   ++    I  VS+DSR IQ G +++ ++G   DG LFI + 
Sbjct: 1   MIERSLGEIAKMIGGEISDEKYSNLLIKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTG 122
             +GA A +  +   +++       + P + V++T K L   A     +     ++ +TG
Sbjct: 61  EDKGASAFLADTDCKIKN-----NISIPYIRVEDTLKSLQDLARAYRSELKNTKVIGITG 115

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    + ++ +        IG          +N +  P  I     LS      +
Sbjct: 116 SNGKTTTKDLLYEVLKEKYKVQKTIGNL--------NNEIGVPKTI-----LSLDEDTNI 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V +   S G      +  +      TN+G  H++  +T++    A      E L ++ 
Sbjct: 163 AIVEMGTDSFGDISLTTNISRPDIAIITNIGDSHLEKLKTKEGILKA-KMEIVEGLSQDG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I   DD      MK+  ++      +   G+      V    +  +  +S       +
Sbjct: 222 YFIYNGDDPT----MKKEISSYEVKQKMISFGEEDDNDFVVKSSDDNRGKVSFTHDGETY 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
             PL G   +YN  V   +   +G+ +  + + L ++     R         G  +  D 
Sbjct: 278 TIPLLGSHNIYNGGVTVLVSSLLGLSTDQIKKGLSEVTPANNR--SSIIEFEGFDVLDDC 335

Query: 362 YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPIMG 403
           Y     SL   LK  + +      I+V G     GD +      +G
Sbjct: 336 YKSNPQSLRSGLKTTKLLGGYDSKILVLGDMLELGDSEDDLHYQVG 381


>gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
 gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
          Length = 432

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 135/376 (35%), Gaps = 22/376 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F  +A+  G+   +V               +T
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAG------DT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +VV+N+ K L   A+    +    I+ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +             P                +  V + AS  G  +  ++  +   G  T
Sbjct: 128 NNHIGVPLTLLRLRPE-------------HDLAVVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  +++ L  ++   I   +D    + +    +        
Sbjct: 175 NVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSED 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G            + +   +     E K  +    L GE+   NAL A  +    G++  
Sbjct: 235 GLYINGHVTGN--SPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L        R +   T      I   Y     S+   + N R + +   +++ G 
Sbjct: 293 KIDKALAGYTPQNNRSQLKKTA-DNTLIIDAYNANPTSMMASISNFRNMQAENKMLILGD 351

Query: 391 GGDRDQGKRPIMGKIA 406
             +  +       KIA
Sbjct: 352 MRELGKDSADEHQKIA 367


>gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF
           [Bifidobacterium bifidum PRL2010]
 gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 513

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/483 (15%), Positives = 147/483 (30%), Gaps = 39/483 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ Q         +       SDSR ++ G +FVAI G + DGH F+ +A   GA   +V
Sbjct: 18  IVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVDGHDFVARAGESGAVVALV 77

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-----ASRLYGKHPENILAVTGTSGKSS 128
                              +VV +T   L L      A+R     P  ++ +TG+ GK++
Sbjct: 78  QHEVDAP---------VAQIVVPDTVDALGLLAKANIAARRAVGTPFTLIGITGSVGKTT 128

Query: 129 VASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
               +  +    G +   +G   + I       ++   +  ++A+  +    +     ++
Sbjct: 129 TKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEMGASHVGEITRLTTI 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                 +            GS   + +   +  Q       A +   +  +   +P    
Sbjct: 189 APPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNADDAHVAAMAPLAPQ 248

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               +       A  +     S      F    +              +G        + 
Sbjct: 249 GHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLERADGGTAHVQLAIR 308

Query: 308 GEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYA 363
           G   V NAL AA +   +G+    +      +  + P R         G         + 
Sbjct: 309 GTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVRRGGMSFTLIDDSFN 368

Query: 364 HTSNSLEMILKNIRTITSGR---IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
              +S+   L  +    SG     I V G     G  +      +G+ A  L   A++  
Sbjct: 369 ANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHEGIGEYAAGLPIDAVIAV 428

Query: 418 DNPRSEDPEKIRAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNK-QDVLVVA 465
            N   E  + + + +  G            P      +  +A      +     D +V+ 
Sbjct: 429 GN-DDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVRALAGDHDDTVVLL 487

Query: 466 GKG 468
            KG
Sbjct: 488 -KG 489


>gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 459

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 150/422 (35%), Gaps = 27/422 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++++   D   +   L+  P   +   ++ + +DSR I+AG +F A+ G + DGH F   
Sbjct: 2   IKNMKPLDLNFICQALN-LPAPAQNLAVSRIVTDSRDIRAGDVFFALDGERFDGHDFAED 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            +A GA A VVS         A        L V +T + L   A          +  +TG
Sbjct: 61  VLAAGAAAAVVSREDCAGLRGA--------LQVADTLEALQTLAQAWRENVNPFVFGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++V   +  + +R       +     +++           P+ L            
Sbjct: 113 SGGKTTVKEMLAAVLRRRFGEEAVLATAGNLNNHI-------GLPLTLL---KLNEKHRY 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  +  G         +  A    N  R H+       A          + L  + 
Sbjct: 163 AVIEMGMNHFGELAVLTRIARPDAALVNNALRAHVGCGFDGTADIARAKSEIYQGLGADG 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  +DA ++    +  +A  +  + G     +H + +          +    +    
Sbjct: 223 LALIPCEDANAEIF--QTASAAHKQQTFGVDKGGVHARNIVLKPLSCAFDLVCGSETASV 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG   V+NA+ AA L +A G+    V + L+    + GR +          I   Y
Sbjct: 281 SLPVPGRHNVHNAVAAAALALAAGLTLNEVSDGLKDFSNIKGRLKVKRGIKGATLIDDTY 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTD 417
               +S++  +  +  + + R + V G  G+  + +   M       A     + A    
Sbjct: 341 NANPDSMKAAIDVLAALPAPR-VFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVG 399

Query: 418 DN 419
           DN
Sbjct: 400 DN 401


>gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
 gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
          Length = 432

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 135/376 (35%), Gaps = 22/376 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G   +G+ F  +A+  G+   +V               +T
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAG------DT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +VV+N+ K L   A+    +    I+ +TGT+GK++    +  +  ++    + +G  
Sbjct: 68  RYIVVENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +             P                +  V + AS  G  +  ++  +   G  T
Sbjct: 128 NNHIGVPLTLLRLRPE-------------HDLAVVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  +++ L  ++   I   +D    + +    +        
Sbjct: 175 NVGKAHLEGFGSFEGIIKTKGEMYDYLRTRKEATIFIHNDNPYLKKIAYGLHQIAYGSED 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G            + +   +     E K  +    L GE+   NAL A  +    G++  
Sbjct: 235 GLYINGHVTGN--SPYLTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L        R +   T      I   Y     S+   + N R + +   +++ G 
Sbjct: 293 KIDKALAGYTPQNNRSQLKKTA-DNTLIIDAYNANPTSMMASISNFRNMQAENKMLILGD 351

Query: 391 GGDRDQGKRPIMGKIA 406
             +  +       KIA
Sbjct: 352 MRELGKDSADEHQKIA 367


>gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 457

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/485 (15%), Positives = 155/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I+ G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAVVTLSEKEVA----------NHPYILVDDVLSAFQTLAAYYLEKSAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHK 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 + +E     L    L        +              +     AK ++     
Sbjct: 149 PDDTEKLVLEMGQDHLGDIHLLSKLAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +      +     K  +T      
Sbjct: 209 MAPGSLLLAPADP----IVEDYLPTDKKVVRFGQGAELEVTDLIE---RKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIHQAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ +
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLN 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
 gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
          Length = 450

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 147/410 (35%), Gaps = 27/410 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           + +L   P    +  IN++++DSR  Q G +F A+VG   D H F+P  +A+GA A+V  
Sbjct: 9   VRRLFRLPEIATDSPINQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVVSR 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              +              L VD+T   L   A+    +    +  +TG+SGK++V   + 
Sbjct: 69  GDCASFSG---------CLKVDDTLAALQTLAAAWRKQLNPFVYGITGSSGKTTVKEMLA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I + +  +   +      ++           P+ L    +         + +  +  G 
Sbjct: 120 SILRTAHGADAVLATAGNFNNHI-------GLPLTLL---NLREPHRHAVIEMGMNHAGE 169

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                           N  R HI                  + LP+   AI+ A+D +  
Sbjct: 170 LATLTRIAAPNVALVNNAMRAHIGCGFNGVDDIARAKAEIYQGLPENGIAILPAEDDHLA 229

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
               +A  +  + L+ G     +H + +          +   G       P+ G+  + N
Sbjct: 230 IF--QATVSAFKTLTFGATVGDVHAENIALEALSSTFDLVYNGNRQAVQLPVAGKHNISN 287

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  AA L IA G+    +   L     + GR +      +   +   Y    +S++  L 
Sbjct: 288 ACAAAALAIAGGLRQPEIARGLAAFSNIKGRLQRKNGIRQTLILDDTYNANPDSMKAALD 347

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
            +  + + R + V G  G+  + + P M +     A     + A    DN
Sbjct: 348 VLAKLPAPR-VFVMGDMGELGEDEAPKMHEEIGIYARDLGIEYAYFVGDN 396


>gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
 gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
          Length = 432

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 141/384 (36%), Gaps = 24/384 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   +V  A  +         +T
Sbjct: 14  TGVTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAGSAYAIVDEADYVPAG------DT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN+ + L   A+    +    I+ +TGT+GK++    +  +  R     +  G  
Sbjct: 68  HYILVDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L +  +      +  V + AS  G  +  ++  +   G  T
Sbjct: 128 N----------NPIGVPLTLLRLQAE---HDLGIVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  K    I    D      +    N        
Sbjct: 175 NVGKGHLEGFGSFEGVIRTKGELYDYLRQKGDSTIFIHQDNPYLTKLAWGLNPISYGEQD 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G            + +   +     EG   +    L GE+ + NAL A  +    G++  
Sbjct: 235 GLYVNGHVTGN--SPYLIFEWKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGVEPE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L +      R +   T      I   Y     S+   + N   + +G+ +++ G 
Sbjct: 293 KIDQALNEYEPRNNRSQLKKTA-DNTLIIDAYNANPTSMLASISNFHNMQAGQKMLILGD 351

Query: 391 GGDRDQGKRPIMGKIAL--DLADI 412
             +  +       KI    +  D 
Sbjct: 352 MRELGKDSPEEHQKIVDYLEKCDF 375


>gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
 gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
          Length = 457

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 158/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+      + A+    K   ++ 
Sbjct: 54  FIETAFENGAVVTLSEKEIA----------NHPYILVDDVLTAFQILAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTKYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MAPDSLLLAPADP----IVENYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    +K    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDKDQFEDLVKQVKESLGANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
 gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
          Length = 475

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 97/468 (20%), Positives = 169/468 (36%), Gaps = 43/468 (9%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+  L         R+   VS D+R ++AG +F AI G   DGH F+  A  +GA A V+
Sbjct: 12  LVGALHARVSGALAREATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAFEKGAAAAVI 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             A++ +   A      P+L+V + ++ L +   R   +    I A+TG+ GK+S     
Sbjct: 72  DEAHAAEFSGAG-----PLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTSTKDMT 126

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +  R G +   +   +               P+ LA+  +           +  +  G
Sbjct: 127 RLMLSRFGETHASVASYNNQWGV----------PLTLARMPAASR---FGVFELGMNHAG 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                +  ++      T +   H+++  + +   +AK  +F         AII  DDA  
Sbjct: 174 EITGLVAQVRPHVAVVTRVAAVHLEHFASVEGIADAKAEIFS--ALDGGVAIINRDDATY 231

Query: 254 KEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           + +   A      + S G  +G    L     I +  +V   + GK   +    PG+   
Sbjct: 232 ERLAAAAAPTAGHIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIA 291

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSL 369
            N+L A  +     ID       L       GR          G    +D  Y     S+
Sbjct: 292 LNSLAALLIAAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSM 351

Query: 370 EMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI---AIVTDDNPRSE 423
               +          GR I V G   +       + G++A+DLA      + T       
Sbjct: 352 RSAFELLGATTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKCDLLFT------- 404

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAI---RTAIEMLNKQDVLVVAGKG 468
               + A + +  P  +   +R  A+      +  L   DV++V  KG
Sbjct: 405 -AGPLMASLYYAAPNAMRAAHRRTALELEEAVLAALRAGDVVMV--KG 449


>gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 509

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/428 (16%), Positives = 129/428 (30%), Gaps = 45/428 (10%)

Query: 14  LINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
            I   S+  +   + ++   V  DSR + +G +FVA+ G + DGH F  +AI QGA A++
Sbjct: 11  AITGGSLDSVDDPDERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAEKAIEQGAVAVL 70

Query: 73  VSSAYSLQDFSATIRSNTPI------LVVDN-------TRKFLSLFASRLYGKHPENI-- 117
            +    +       +           +  ++           LS  A  +  +       
Sbjct: 71  AARPVGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGALSNLAREVTSRLAAEQGL 130

Query: 118 --LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + VTG++GK+S    +  I +  G +    G  +                     AL 
Sbjct: 131 DIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLPY-------------TALR 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRL 233
                      + A   G  +H  +      G   N+G  H+    +++    A  ++  
Sbjct: 178 CDEHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAKGELIE 237

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAH----NAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                     A++ ADD +   +  R                    +    ++  +    
Sbjct: 238 ALPAAADGGVAVLNADDPFVASMAPRTQAKVVYYSANRPQAADAQYYATDIELDDVARPS 297

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHLEKLHVVPGRFEF 348
               +   +       + G+ QV NAL AA   I  G++                 R + 
Sbjct: 298 FTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPTVAARALSGHQTSSAHRMDV 357

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMIL----KNIRTITSGRIIVVFGCGGD---RDQGKRPI 401
                    I   Y    +S+   +             R I V G  G+          I
Sbjct: 358 RTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAVEAHRI 417

Query: 402 MGKIALDL 409
           +G +    
Sbjct: 418 LGSVLSKY 425


>gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
 gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
          Length = 466

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+    +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +     G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFLQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 269

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              VS+DSR    G +FVA+ G + D H F+     +GA A +VS         +    N
Sbjct: 26  FERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVADRGASAAIVSR--------SPAEWN 77

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            P L V +TR  L   A     +    ++AVTG++GK++V   +  I   
Sbjct: 78  LPALKVADTRAALGALAHGWRMRFSMPMVAVTGSNGKTTVKEMIASIFAA 127


>gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
 gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
          Length = 473

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 151/473 (31%), Gaps = 41/473 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +   P    +R   +   V  DSR ++ G +F A  G + DGH +   
Sbjct: 1   MIALSLAEIADIVGGQPHDMPDRSLTVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAR- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         A      P +VVD+    L   A  +  +    ++A+TG
Sbjct: 60  ----------AAVEAGAVAVLAARPVGCPAIVVDDVVAALGALACAVVERLGTAVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +R   + +  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQLLERKAPTVWTPGSLNNEIGLPLTALTATAE-------------TRH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G   +         G   N+G  H+    +++A   AK  L E  LP++ 
Sbjct: 157 LVLEMGARGVGHIHYLAQLTPPTIGLVLNVGSAHLGEFGSREAIAQAKGELVEA-LPEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD   + +  R                     ++     +    +       D 
Sbjct: 216 VAVLNADDPLVRAMAARTQARVVLFGEAPDADVRGENVRLTDDG-RPAFALHTPTGCSDV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361
              L GE  V NAL AA +   +G+    + E L         R E          +   
Sbjct: 275 TLRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSVAGTLSRWRMEVTERPDGVTVVNDA 334

Query: 362 YAHTSNSLEMILKNIRTITS------GRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411
           Y     S++  L+ +  +        GR   V G     GD    +   +G++A+ L   
Sbjct: 335 YNANPESMKAALRALAAMGKAARAEGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVS 394

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +       S        E   G        +   A+      L   DV++V
Sbjct: 395 KLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446


>gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
 gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
          Length = 468

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 136/382 (35%), Gaps = 30/382 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ I  + +DSR  +AG  F+A+ G + D H F+ Q + +G +  +V     L      
Sbjct: 33  PEQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDKGCQVAIVERPLDL------ 86

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   LVV +TR+ L    +    ++P+  ++A+TG+SGK++    +  I  R   + 
Sbjct: 87  ---DMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTL 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +            T                    + + AS  G   +    ++ 
Sbjct: 144 VTRGNLNNDLGVPMMLLELTAE-------------HQYAVMELGASHQGEIDYTSQLVQP 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H+     ++    AK  ++  +    +  I  ADD          H   
Sbjct: 191 QVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTD----AIRHAVQ 246

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +    +G  I+  ++  +    Q  +       +   P  G   V NA  A    +A
Sbjct: 247 TTRVLSFGEGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGI    ++  LE      GR  F+        I   Y     S+    + +   +  ++
Sbjct: 307 IGISLDDIVIGLELAQGAKGRLNFISHKQH-LFIDDTYNANPTSMRAAGEVLAQQSGIKV 365

Query: 385 IVV--FGCGGDRDQGKRPIMGK 404
           +V    G  GD    +   +G+
Sbjct: 366 MVTGDIGELGDAAAVEHYRLGR 387


>gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
 gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
          Length = 466

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 154/453 (33%), Gaps = 43/453 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWAVSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQALEKGAGAALVSR------VPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G +   
Sbjct: 73  PADAPLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKTSTKEMLARMLSDQGRTHAA 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +   +               P+ LA+            + +  +  G         +   
Sbjct: 133 VASYNNHWGV----------PLTLARMPRDT---EYAVIEIGMNHPGEIAPLAKPARPHV 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   H++     +     K  + E  L     A++ AD A +  +   A + G  
Sbjct: 180 AMVTTVAAVHLEAFDNVEGIAREKAAIMEG-LEPGGVAVLNADIAEAHVLRDVASDLGVS 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               G       L        +        G++ +      G     NAL A     A+G
Sbjct: 239 ARWFGESASDYTLHSAGIEGEETVARAIANGREVELHIQSLGAHFAMNALGALACVEALG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTIT-SG 382
            D       L     V GR         GG I      Y     S+   L  +      G
Sbjct: 299 ADPVKAAGSLALWSPVKGRGVREAIRLEGGTITLLDDSYNANPTSMAAALAVLAATPGQG 358

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           R I      GD  +   P   ++   LAD+     D  +  D       ++  +   + +
Sbjct: 359 RRIA---YAGDM-KELGPQEVELHAGLADL-----DAVKGIDKIHCIGPLMRALHEALPE 409

Query: 443 GNR-------IEAIRTAIEMLNKQDVLVVAGKG 468
           G R        EA+      +   D+++   KG
Sbjct: 410 GKRGGWYQTSAEAVPGLASEIQGGDIVL--AKG 440


>gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
 gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
          Length = 474

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 147/475 (30%), Gaps = 42/475 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE---VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ +     P    +  +     V  DSR ++ G +F A  G   DGH +   
Sbjct: 1   MIALTLAEIADITGGRPHDIPDPSVRTAGPVVIDSRQVEPGSLFAAFEGEHVDGHDYAG- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       A      P +VV +  K L   A  +  +   +++A+TG
Sbjct: 60  ----------RAVAAGAVAVLAARPVGVPAIVVPDVEKALGALARTVVERLGTDVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ Q    + +  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQVLQHHAPTVWTPGSLNNEIGLPLTALKATAE-------------TRH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKE 241
             + + A   G   +         G   N+G  HI     ++A   AK  L E      E
Sbjct: 157 LVLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREAIAQAKGELVEALPSEAE 216

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               +   D      M     A   +            +       +   T+       D
Sbjct: 217 GGVAVLNADDLLVRAMSARTKARTVLFGEAEDADVRATEVRMTPAGQPSFTLHTPTGCSD 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYV 360
               L GE  V NAL AA +   +G+ +  +   L         R E          +  
Sbjct: 277 VTLRLYGEHHVSNALAAAAVAHVLGMPAEEIATALSGAGTLSRWRMEVTEREDGVTIVND 336

Query: 361 DYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD 411
            Y     S+   L+ +  +        GR   V G     GD    +   +G++A+ L +
Sbjct: 337 AYNANPESMRAALRALVAMGEAGKADGGRTWAVLGPMAELGDDSLAEHDAVGRLAVRL-N 395

Query: 412 IAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ +     R     ++ A  E   G    +   +   A+      L   DV++V
Sbjct: 396 VSRLVAVGGREASWLQLGAYNEGSWGEESVL-VSDAQAAVDLLRSELRPGDVVLV 449


>gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 427

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 32/361 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + +D+R I++  +F A+ G+  DG+L+  QA+ +GA   V+ +     D         
Sbjct: 15  SSICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVIDNPDLQGDRK------- 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V N    L   A     +    I+A+TG++GK++    V ++  +        G  
Sbjct: 68  --ILVKNVLATLQDLAHFHRKQLKIPIVAITGSNGKTTTKKLVSEVLSKKFKVRATKGNL 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +            T   + L       + Q       + +                G  T
Sbjct: 126 NNHIGVPLTLLSFTAE-LDLGIIEIGANHQKEIESLCKIAE------------PNYGYIT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L++ L+  +       DD                V   
Sbjct: 173 NFGKAHLEGFGGVEGVIKGKSELYDYLIHHDGLIFFNRDDD---------IQVKKAVNYK 223

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            Y      L             + +E         L GE+   N   A G+    G+   
Sbjct: 224 NYSIGEKPLSDCRVTFMDANPFVELEYSHLQIKSQLIGEYNFKNIAAAIGVGRYFGVGKD 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E +E       R + +  N     +   Y     S++  L++ + ++S    V+ G 
Sbjct: 284 EIKEAIENFEAEEMRSQVIEKNDLK-ILLDAYNANPTSMKAALESFKKMSSQSQTVILGD 342

Query: 391 G 391
            
Sbjct: 343 M 343


>gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
 gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
          Length = 430

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 135/396 (34%), Gaps = 39/396 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V +D+R+I+   +F A+ G   +G+ F  +A+ QGA  +VV     +++         
Sbjct: 14  SGVDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVVDDKKFVKNKE------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V N  + L   A          ILA+TG++GK++    V  +  R   +    G  
Sbjct: 67  HYILVQNVLESLQKLAIFHRKYLGIPILAITGSNGKTTTKELVHSVLLRKFKTIATKGNL 126

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
           +               P+ L              V + A+ H L+   L  I     G  
Sbjct: 127 NNH----------IGVPLTLLSMDD---HTEFGIVEMGAN-HPLEIEFLCTIANPDYGYI 172

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++   + +    AK  L++ L  +     +  DD                  +
Sbjct: 173 TNFGKAHLEGFGSLEGVVKAKTELYKNLQERHKLIFLNIDDE---------VQRKHENYN 223

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             +     +   V   +        +   + DF   L GE+   N   A  + +   +  
Sbjct: 224 HTFSFGESNEADVQLSYQSGLANAQLNYNNTDFKSKLTGEYNAKNMAAALCIGLYFKVKF 283

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVF 388
             +   L        R + +   +    I   Y     S+   L+N + + + +  I + 
Sbjct: 284 EEIQTALSNYSPDNNRSQTL-NTASNTIIMDAYNANPTSMHAALENFKQLKTNKQKIAIL 342

Query: 389 GCG---GDRDQGKRPIMGKIALDLADIA--IVTDDN 419
           G     G     +  I+       +D A   +  DN
Sbjct: 343 GDMFELGSSAVTEHQIIANYV-QNSDFAETYLLGDN 377


>gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
 gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
          Length = 486

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 150/450 (33%), Gaps = 37/450 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V  DSR ++ G +FVA+ G   DGH FI             + A            + 
Sbjct: 44  SGVEMDSRDVRPGDVFVALKGEAMDGHKFIA-----------AAFAKGAVAAITDRPVDF 92

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P ++V +T K L   A     +     +AVTG+ GK+ V   +     R+          
Sbjct: 93  PHVLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGVKEAIFASLDRA--------SR 144

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  +        P+ LA+  +           +  +  G      D ++      T
Sbjct: 145 GAAHRSVRSYNNHVGVPLSLARMPARAK---FGVFEMGMNHAGEIAPLSDHVRPHVALIT 201

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            +   HI+   + +A  + K ++F   +    +     ++ A       +A         
Sbjct: 202 TIAPAHIENLGSMEAIADEKAQIFTGLVTGGTAIIPADSEYAGRMIGHAKALGVNVVTFG 261

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L  + +      VT  +      +    PGE  + N+L       A G D 
Sbjct: 262 RSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGVIAAVRAAGGDL 321

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIV 386
           A     L ++  + GR       + GG+  +    Y     S+   L+ +    + R + 
Sbjct: 322 ASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRALGQTPAHRRVA 381

Query: 387 VFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIPGFI 440
           V G     GD        + + +     D  I+  D  R+   E  R  A  +   P F 
Sbjct: 382 VLGSMKELGDFAPRFHAQIAEPLTEAKIDHVILVGDEMRALAGELGRMPANSLGFAPSFA 441

Query: 441 EKGNRIEAIRTAIEM--LNKQDVLVVAGKG 468
           +  +  EAI  A+E   L   D ++V  KG
Sbjct: 442 QCDSPAEAI-AALEEYGLTHGDAVLV--KG 468


>gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 511

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/509 (15%), Positives = 154/509 (30%), Gaps = 66/509 (12%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ +          +    +   V  DSR +  G +F+A+ G + DGH F  +
Sbjct: 1   MIALTLQEIADITGGRLDCVPDPAATVTGFVEFDSRKVTPGGLFLALPGARVDGHDFAEK 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNT------PILVVDN-------TRKFLSLFASRL 109
           A+  GA A++ +    +                   +  ++         + LS  A  +
Sbjct: 61  AVESGAVAVLAARPVGVPAIVVEPTGKVEGDGANADIYANDEDGSAAAVIQALSALARAV 120

Query: 110 YGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
             +       NI+ VTG++GK+S    +  I + +G +    G  +              
Sbjct: 121 TQRLAAEDGLNIVGVTGSAGKTSTKDLIATIFRAAGETVAPPGSFNNEVGLPY------- 173

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                  AL            + A   G  +H         G   N+G  H+    +++ 
Sbjct: 174 ------TALRCDEHTEYLVAEMSARGIGHIRHLTGITAPKVGVVLNVGTAHLGEFGSREN 227

Query: 226 YFNA--KMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHL 279
              A  ++        +   A++ A+D++   +      +                  + 
Sbjct: 228 IALAKGELVEALPSAAEGGVAVLNANDSFVAGMALRTNAKVVYYSAVAKQGSTPPAQYYA 287

Query: 280 KKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHL 336
             V      +   +              + G  QV NAL AA   I +G+ +  +     
Sbjct: 288 TDVQLDDVARASFLMHTPGHAPLPVKLQVFGAHQVSNALAAAAAAIELGLSAELVANALS 347

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCGG 392
                   R +          I   Y    +S+   +  +    + R     I V G  G
Sbjct: 348 GHRIASEHRMDVRNRRDGVTLIDDSYNANPDSMRAAIAALAYTATARPDARSIAVLGEMG 407

Query: 393 DRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           +         R +  ++A    D  +    +P +    +       GI   +   +  EA
Sbjct: 408 ELGDDALDAHRQLGAELAKYHVDHLVAVGSSPNTRAMAEAAQA--KGINTSVSV-DVDEA 464

Query: 449 IRTAIEMLNK-------------QDVLVV 464
            +    +L               +DV++V
Sbjct: 465 AKIVDSLLRTPPVGVDDWPQRDVKDVVLV 493


>gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2]
          Length = 466

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKLV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+    +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +     G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSVNFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
 gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
          Length = 444

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/465 (16%), Positives = 158/465 (33%), Gaps = 47/465 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             K+   ++         WR  ++   S+D+R + AG +F+A+ G    G  F+  A  +
Sbjct: 6   TAKEIATIVGGYLRGNDDWRALEV---STDTRTLTAGQLFIALRGEHFCGEDFLQTAQER 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++V               + P +VV++T   L + A+    +    I+ +TGT+GK
Sbjct: 63  GAVAVIVQE---------YREIDIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGK 113

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    + +I    G +   +G  +               P+ L +  +         + 
Sbjct: 114 TSTKEMLYRILSAQGKTLATVGNLN----------NDIGVPLTLLRLQNEHR---FAVIE 160

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A+     +  +  +       TN+   H+    +      AK  ++            
Sbjct: 161 MGANHPRDIERLVKIVCPDVAVITNVSAAHLQGFGSLDGVAAAKSEIYRFSSGALVV--- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD   +   ++   +   +  ++    ++          N Q+ T+    +  +  + L
Sbjct: 218 NADLPQAAAWLQEFGHRSIQTFALEQSAQWTAA---DISDNGQRFTLMHLAQRAEIAWQL 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   V NAL A       G+  A   + L+ L +   R                Y    
Sbjct: 275 CGRHNVANALAATAAASFAGVSLAQSAQALQGLRLQQSRL-VALHVRHHTLYDDTYNANP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S +  ++ I+T      +V+ G  G+       +  ++A    +  I            
Sbjct: 334 ASFKAAIEVIKTAAH--SLVIAGKMGELGAQSAALHAEVAAFAREKGI-------KHFWA 384

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD---VLVVAGKG 468
               +   G P      +  EA+  A+  +   +    ++V  KG
Sbjct: 385 LSVPDYAAGFPDARLFEDV-EAVNQALRDILAGEKPYTVLV--KG 426


>gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
 gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
          Length = 452

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 138/417 (33%), Gaps = 30/417 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I K   E+ N +        +  +KI+ V  DSR +    ++V I+G + DGH F  Q 
Sbjct: 1   MIVKTIHEITNMMHATLHGDIDDTKKIHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQT 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GA   +    +           + P+++VD+T + +   +     +    ++ VTG+
Sbjct: 61  IEDGALISLWQKDH-------VPYPDFPVILVDDTLRAMQDLSKAYLDELHPLVIGVTGS 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+S    +  I  +   +    G         +++ +  P  I       +     V 
Sbjct: 114 NGKTSCKDMLYSIFSQEKKTQKTQGN--------RNSEIGLPLTI-----FDFDEDIEVA 160

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +   + G +  +L  I     S           +   +           E   +   
Sbjct: 161 ILEMGMENKG-EITQLTSIAQPDISVITSIGSAHMENLGGKLQIAQAKCEILEGTKENGL 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   +    +EV+         V+S G  G       +      + +       D    
Sbjct: 220 FLYNYESKEIQEVLCTLDTENKNVVSFGQGGDVSITSDIEYDK--EGIVFKCNILDAPVH 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G+FQ  NAL    +  A  +    +L  L+ L +   R + +   +    +   Y 
Sbjct: 278 LRAFGDFQAMNALPCIYIAKACHLKEESILNGLKNLEMTKMRTQLISVKNA-YILDDTYK 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVT 416
               S +  +  +  + + + I +       G  ++     +G  A     D    T
Sbjct: 337 SNPESAKAAIDTLMELPANKHIAIISDMLDLGSEEKQLHYDVGVYAKEKGVDELYCT 393


>gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11H7]
          Length = 457

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 158/479 (32%), Gaps = 42/479 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           DL   +  +++  +        +      +S DSR      +F+AI G   DGH F+P+ 
Sbjct: 2   DLSLLELKDVLGDIKNLGEGEIDSLNFKNISIDSRTCFENDLFIAIKGKNFDGHSFLPEV 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +G +++V+      +     +  N P  VV++T +        +  K    ++A+TG+
Sbjct: 62  LNKGVKSVVI-----KKGMQKLLPDNFPCWVVNDTLEAFQKLTLLIRKKLSIPVVAITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    V ++ ++ G         +                      L+      V 
Sbjct: 117 VGKTTTKEMVGEVLKKLGKIKLSHSNFNNEIGVG-------------LTILAADKEDKVL 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +     G  ++     +      TN+G  HI   ++++    AK  + + L PK   
Sbjct: 164 VLEMGMRGLGQIENLSKHSEPDIAVITNIGTAHIGLLRSKKNITYAKCEISKFLNPKGVV 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTISVEGKDFDF 302
            I   D    + + +       +V  +  + +     K          +  ++  ++  F
Sbjct: 224 IIPANDLLLEETLREYWKGRVIKVELLNIKDQKGSFKKNDNLRGFYDPLNETILIEENTF 283

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                G     N L A  +   +GID     +          +   +  + +       Y
Sbjct: 284 KISFEGFHNASNFLFAYAVAKELGIDFESFNKFDFVSLGGRNK---ILKSVKTTIYDESY 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             +  S+   +KN+      +   +FG            +G+ +           +N   
Sbjct: 341 NASPESVNACIKNLIGKPRNKF-FIFGSMQ--------ELGEESEKYHKEIFNLINNSDI 391

Query: 423 E--------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           E          EKI  + +     F+   N  +  +   +   K D +++  KG     
Sbjct: 392 EKCFFICDKKSEKIYTKYLKDKKKFLVLNNIKDVPKEINKSTKKGDSILI--KGSRCWQ 448


>gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 463

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/480 (15%), Positives = 156/480 (32%), Gaps = 53/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                   TP L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGTPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                  P  +          
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +   RL                             A+ ++       
Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G    +       +K  +T +      
Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +  +    +  ++   L     D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +   D+ +  +  ++ +++            E+ ++ EA+   ++  LN  D +++  KG
Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439


>gi|224023460|ref|ZP_03641826.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
 gi|224016682|gb|EEF74694.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
          Length = 461

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 129/375 (34%), Gaps = 26/375 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  QA+ +G    VV      Q      + +  I
Sbjct: 47  VTTDSRNCPEGSMFIALKGGNFNGNAFAEQALQKGCRYAVVDEPEYAQ------KDDPRI 100

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V++  K L   A+    +    I+ +TGT+GK++    +  +  R     +  G  + 
Sbjct: 101 LLVEDCLKALQELANYYRRQLGTRIIGITGTNGKTTTKELIATVLGRKYNVLYTQGNLNN 160

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P                +  V + AS  G        ++   G  TN+
Sbjct: 161 HIGVPLTLLRLKPE-------------HEIAVVEMGASHPGEIHMLTHIVEPDYGIITNV 207

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H++   + +     K  L++     K S   I  ++ Y  ++ +     G   +  G
Sbjct: 208 GKAHLEGFGSFEGVIRTKGELYDYLRSRKNSSVFIQNENPYLNQIAE-----GLNCIRYG 262

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                     V             E    +    L G + + N L AA +    G++   
Sbjct: 263 QTEGLYVSGHVLKCSPFLAFAWIGEKGLHEVQTHLIGTYNLDNVLAAAAIGRFFGVEEEE 322

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L        R +          I   Y     S+   L+N R + +   +V+ G  
Sbjct: 323 ISLALSSYIPQNNRSQLE-ETPNNHLIVDAYNANPTSMMAALENFRHVEAAHKMVILGDM 381

Query: 392 GDRDQGKRPIMGKIA 406
            +     +    KI 
Sbjct: 382 KELGSSSKEEHAKIV 396


>gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1087]
          Length = 456

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 157/484 (32%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              ++VD+        A     K   +++
Sbjct: 54  FIPTAFAQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVV 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAHLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+  A + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYTALQEGVSEAAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
 gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
          Length = 469

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + K++ +S D+R +Q G +FVA+   + DGH F+ QA+ +GA A +V            +
Sbjct: 21  DWKVSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQALDKGAGAALV------THRPDGV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P+L+V++ +  L         +    ++A+TG+ GK+S    +  +    G +   
Sbjct: 74  AADAPLLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKTSTKEMLACMLADQGRTHAA 133

Query: 147 IGPTSTIS 154
           +   +   
Sbjct: 134 VASYNNHW 141


>gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 486

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 136/410 (33%), Gaps = 47/410 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 32  MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 84

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 85  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 134

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G             L  P             
Sbjct: 135 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQD 193

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  HV  E +   +    L G              H+++  +++    A+ ++     
Sbjct: 194 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 239

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +I   D      +                G    L+       K  +T      
Sbjct: 240 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 292

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+  + +    +
Sbjct: 293 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 352

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIM 402
              Y     ++ +IL+    I +   G+ I +       G++       M
Sbjct: 353 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQM 402


>gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum rubarum]
          Length = 495

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 133/427 (31%), Gaps = 47/427 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    +     VS+D+R ++   +FVA+ G+  DGH ++ +A  +GA A +VS +     
Sbjct: 25  PALPDDTPFAGVSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSRSVEATG 84

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQ 138
                    P+L+V +TR  L   A  +  K     + ++ +TGT+GK++    +  +  
Sbjct: 85  ---------PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLS 135

Query: 139 RSGLSSFQ----IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV------- 187
             G               +     +        + L   +            +       
Sbjct: 136 AEGRRPHTNRQNWNNEIGVPRTLWEWGEKDGDAV-LEVGIRKPGDMDYLSSVLVSDASIV 194

Query: 188 -EASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                  L+    ++G+        N  R            F            +    +
Sbjct: 195 TSVGEGHLETLGSVEGVWKEKSHLLNWVRPGGAIVLPLDLLFRYPASPVFRERQRRFFFV 254

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D             G R +  G       L+K          T     + F +  P
Sbjct: 255 ELDPDPG-------DSARGPRSVPEGSTILTGTLRKEEGGKWILSGT--TGPESFSWKMP 305

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            P      +AL+A     A+G+       HLE    +PGR +   T      +   Y   
Sbjct: 306 SPSSILAMDALLALAAGNALGVSLQEGANHLENFSPLPGRMQEKRTPEGALLLLDHYNSN 365

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-SED 424
             SL    +    +      +            R   GK+   L D+  + +D+PR   +
Sbjct: 366 PLSLRGAFQWCAEVWKKEATL-----------SRGEPGKLLAVLGDMLELGEDSPRLHRE 414

Query: 425 PEKIRAE 431
             +I AE
Sbjct: 415 AGRIAAE 421


>gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
 gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
          Length = 457

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 159/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++   +                ++    + ++   E L+  D ++
Sbjct: 382 TVIF-----YGEDIAELAQLVSQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
 gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
          Length = 457

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 157/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E++           + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVVQAVGAKNDVSIFEDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAVVTLSEKEVA----------NHPYILVDDVLSAFQTLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +      +     K  +T      
Sbjct: 209 MAPGSLLLAPADP----IVEDYLPTDKKVIRFGQGAELEVTDLIE---RKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIAAYVALQEGVSEEQIRQAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAISANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 488

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 146/479 (30%), Gaps = 45/479 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+ +  +             V +DSR    G ++VA  G   DGH F+  A A
Sbjct: 1   MIAFTAAEIADITNGRLDAEPGITPLSVVTDSREATQGSLYVAKPGENADGHDFVGSAFA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---------N 116
            GA   +V       D +       P ++V +    +   A+    +             
Sbjct: 61  AGATLALVEHPVLSPDGTPY-----PSVLVPDAVLAMGKLAAESVRRIRAARAETNDELT 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++    +  I    G +    G          +  +  P  ++ A     
Sbjct: 116 VIGITGSAGKTTTKDLLAGILSAHGTTVAPKGS--------YNGEIGVPLTVFTAGT--- 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + + A+  G   + +D +K   G    +G  H       +    AK  L E 
Sbjct: 165 --DTRYLVIEMGATGIGHISYLVDMVKPDIGVVLAVGTAHAGEFGGVENIAQAKGELVEG 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTI 293
            L     AII  DD     +  R   +     + G  G  +           + +  + +
Sbjct: 223 -LAASGTAIINLDDERVAAMQARTSASVLGFTAEGRPGAAVQALNADTNAEGNPEFDLLL 281

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHVVPGRFEFVGTN 352
                       L G     N L AA    A G+    +      +      R E     
Sbjct: 282 PGGDTPHHVSSRLIGAHHTGNLLAAAAAAWAAGVSGEDIAAALSSQAAASRWRMERTERA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALD 408
                I   Y     S+   L+ +  +  GR    V G     G+    +   +G   + 
Sbjct: 342 DGVTIINDAYNANPESMRAALRTLADLGQGRRTWAVLGAMLELGEDSIREHTAVGTQVVR 401

Query: 409 L--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           L  + + +V       E      + +  G      I   +  EA       L   D+++
Sbjct: 402 LNISRLVVV-----GREARALYVSAVQEGSWGDECIFAEDAEEAYELLSAELEPGDLVL 455


>gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
 gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
          Length = 471

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 136/469 (28%), Gaps = 35/469 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR    G +FVA VG + DGH F   
Sbjct: 1   MIALSLAEIAAVVGGQTHDIPDPSVQVTGPVVRDSREAVPGSLFVAFVGERVDGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                        A       A+     P +VV++ +  L   A  +  +    ++A+TG
Sbjct: 60  ----------AVVAAGAVAVLASRPVGVPAIVVEDVQAALGALARHVVNRLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ Q    + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLIAQVLQTKAPTVFTPGSLNNEIGLPLTALSATEDTRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240
             + + A   G  ++  +      G   N+G  HI     ++    A  ++         
Sbjct: 158 -VLEMGARGIGHIRYLTELTPPKVGVVLNVGSAHIGEFGGREQIAQAKGELVESLPAAED 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+ ADD   + +  R                     ++           +  G   
Sbjct: 217 GGAAILNADDPLVRAMASRTKAKVILFGESDEADVRAENVRLTDSGQPSFRLHTPSGASD 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             +              AA         + +     E   +   R E          +  
Sbjct: 277 VTMRLYGEHHVSNALAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTVVND 336

Query: 361 DYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIV 415
            Y     S+   L+ +  +  GR    V G     GD    +   +G++A+ L     + 
Sbjct: 337 AYNANPESMRAALRALVAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVA 396

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 S        E   G        +   AI      L   DV++V
Sbjct: 397 VGGREASWLQLGAYNEGSWGEESVH-VSDAQAAIDLLRSELRPGDVVLV 444


>gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2
           ,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 473

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 150/475 (31%), Gaps = 45/475 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V  DSR +  G +F A  G + DGH +   
Sbjct: 1   MITLSLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         A      P +VV++    L   A  +  +    ++ +TG
Sbjct: 60  ----------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAE---------------T 154

Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            H+ +E  + G+   R          G   N+G  H+    +++A   AK  L E  LP+
Sbjct: 155 EHLVLEMGARGIGHIRYLADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEV-LPE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++ ADD   + +  R                     ++ A   +    +       
Sbjct: 214 DGCAVLNADDPLVRAMASRTRARVLLFGEAPEADVRGEKVRMTADG-RPAFELHTPTGCS 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +   +G+    + E L +       R E          + 
Sbjct: 273 DVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVN 332

Query: 360 VDYAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409
             Y     S+   L+        R    GR   V G     GD    +   +G++A+ L 
Sbjct: 333 DAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +       S        E   G        +   A+      L   DV++V
Sbjct: 393 VSKLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446


>gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 462

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 138/369 (37%), Gaps = 30/369 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  IN +S  S  I+   IF+A++GN+ DGH F+ QA+  GA+A++V+          
Sbjct: 19  GSDVMINTISIHSDLIEEQCIFIALIGNRYDGHDFVEQAVMAGAKALLVNR--------- 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  + P L+V +TR  L   A  +  +    I+A+TG+SGK+SV      I +  G   
Sbjct: 70  YVSLDIPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKTSVKEMTASILKECGTVI 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--I 202
                                  I L        + G+    VE  S+ L + +  G  +
Sbjct: 130 ATQKN----------YNNFIGVSITL-----LKLTYGIDFAVVELGSNKLGELKKLGEIV 174

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H+    +       K ++F  +    + A+I  D     +      N
Sbjct: 175 GADVALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVINLDSYSFVQGNSILLN 234

Query: 263 AGCRVL---SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +          G       V    +  + T+           P+ G   + N L A+
Sbjct: 235 FKKKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPIFMPILGIHNISNILAAS 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRT 378
            L  A+G   + ++  L+K++ +PGR      N     +  D Y     S+   +  +  
Sbjct: 295 ALSFAVGASLSNIVHGLQKMNALPGRLFPFILNRGKLCLIDDTYNANIGSMIAAINVLSF 354

Query: 379 ITSGRIIVV 387
           +   RI+VV
Sbjct: 355 MPGYRILVV 363


>gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
 gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
          Length = 498

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 129/396 (32%), Gaps = 30/396 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +F AI G   DGH ++  A+ +GA A VV  A       +  R   
Sbjct: 48  TGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAALEKGALAAVVDEA----HAESLARLGP 103

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             +V D+    L         +    I AVTG+ GK+S    ++     +G +   +   
Sbjct: 104 LYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKTSTKEALRLALSAAGRTHASVASY 163

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+              +  +  G        ++      T
Sbjct: 164 NNHWGV----------PLTLARMPRQ---TEFGVFEIGMNHQGEITPLTRMVRPHVAIIT 210

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHNAGCRVL 268
            +   H++     +A  +AK  +F   L     AI+ AD+   + +    +   AG    
Sbjct: 211 TVAPVHMENFTGVEAIADAKAEIFAG-LEPGGVAILPADNPQFERLAAAAKRSAAGLVTS 269

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +     L  V    +   V   + G+   +    PG     N+L       A+G+D
Sbjct: 270 FGADKHAEARLLDVRLAADHSMVEADICGQLLTYRLGAPGRHLAMNSLAVLLAAKALGVD 329

Query: 329 SALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTITSG 382
                + L      P    R E    +     I   Y     S+         +   + G
Sbjct: 330 PREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNANPASMRAAFDLAGALAPPSPG 389

Query: 383 RIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAI 414
           R + V G     G         + + +A +  D+  
Sbjct: 390 RRVAVLGDMLELGSHAADMHAGLAQDLAANHFDLVF 425


>gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
          Length = 455

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 140/428 (32%), Gaps = 40/428 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P     + ++ V +DSR I+AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALNLPTPSENKPVSRVVTDSRDIRAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRDNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R       +      ++           P+ L      
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + +  +  G         K  A    N  R H+                  +
Sbjct: 153 NEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQ 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L ++  A+I  +D ++     +  +   +  + G     +H + +       +  +   
Sbjct: 213 GLGEDGLALIPCEDEHAVVF--QTTSQDHQQRTFGIDSGDVHAENIVLKPLSCEFDLVCG 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +    + P+PG   V+NA  AA L +A G+    V E L+    + GR           
Sbjct: 271 NERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKGAT 330

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411
            I   Y    +S++  +  +  +++ R I V G  G+  + +   M       A     +
Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMSAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389

Query: 412 IAIVTDDN 419
            A    DN
Sbjct: 390 AAYFVGDN 397


>gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
          Length = 457

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 156/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+     +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D   ++ ++               G+   L+    +  K  +T      
Sbjct: 209 MASGSLLLMPADPIVEDYLQTDKKVV-------RFGQGAELEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 449

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 122/391 (31%), Gaps = 37/391 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  +  V  DSR I+   +FV + G + DGH F  QA   GA A + S        +  
Sbjct: 18  NETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWS------HPTIQ 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 ++ V +T K     A     K    I+A+TG++GK++    V  +  +   +  
Sbjct: 71  PPQGILVIPVKDTVKAFQQLARAYKEKLAPKIIAITGSNGKTTTKDMVDAVMAQKYQTYK 130

Query: 146 QIGP----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G          +       T    + +    +            +A++  L       
Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITL------- 183

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                        +++   +             ++      P      D +   + +   
Sbjct: 184 -------IGEAHIENLGSREGIAKAKMEITAGLKKDGFFMIPVDEPLLDPFVPNLTQTIE 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G     +          +          T+           P+ G + V NAL+A GL
Sbjct: 237 TFGLTEGDLQGDIVEESQDQTIFTVAGTTFTL-----------PVLGGYNVKNALIAIGL 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
               G+ +  + E L    +   R ++V   +    +   Y     ++ ++L + R +  
Sbjct: 286 GRHFGVSNEAIKEGLAHFQLTKNRTQWVTAGNGAAILSDIYNANPTAMGLVLDSFRKLPL 345

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            GR I V     +       +  ++A  L D
Sbjct: 346 EGRRIAVLADMLELGPDSAQMHEQMAAHLDD 376


>gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 463

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/480 (15%), Positives = 156/480 (32%), Gaps = 53/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                 S  P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------SGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                  P  +          
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +   RL                             A+ ++       
Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRNKIAQGKMQIVDGMN 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G    +       +K  +T +      
Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +  +    +  ++   L     D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +   D+ +  +  ++ +++            E+ ++ EA+   ++  LN  D +++  KG
Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439


>gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
 gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
          Length = 463

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 155/480 (32%), Gaps = 53/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                  P  +          
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +   RL                             A+ ++       
Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G    +       +K  +T +      
Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +  +    +  ++   L     D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +   D+ +  +  ++ +++            E+ ++ EA+   ++  LN  D +++  KG
Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439


>gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB900]
          Length = 466

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 140/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLITRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+    +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +     G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSLVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+   +L  D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 398


>gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
 gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
          Length = 454

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 155/401 (38%), Gaps = 33/401 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + K+N V++D+R I+ G +F A+ G + D H F+  A   GA A +V       D 
Sbjct: 15  LHGDDLKVNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNGGAIAALVEHEQDCFDN 74

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                    ++ V ++RK L   A     +     LAVTG +GK++V      +      
Sbjct: 75  ---------VVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVKEMAATMLGE--- 122

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +T  +F  D  +    P+ L +  +         + + A++ G         
Sbjct: 123 -----GTLATNGNFNNDVGV----PLTLLRLRAEHR---YAVIELGANAPGEIAWTSSLT 170

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+   H++   + Q   +AK  +F         AI+  DD+++    ++A  
Sbjct: 171 RPQVVLVTNVTGAHLEGFGSMQGIADAKAEIFTGCTQGGQ-AIVNNDDSFADFFAEKARA 229

Query: 263 AG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           AG    RV           L     + ++      ++      L PLPG  QV NAL+A 
Sbjct: 230 AGLTVVRVSMDESTRAGADLYAENIVLHRDSAEFVLQPLGDAVLVPLPGAHQVSNALMAC 289

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A+G     VL  L  L  VPGR         G  +   Y     S+   +  +   
Sbjct: 290 AAVRALGASLPQVLPRLAALKPVPGRMHIQSAG-TGTVVDDTYNANPGSVRAAIDWLAAQ 348

Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIALD--LADIAIVT 416
            + +++V+   G  G +       +G+ A    +A + ++T
Sbjct: 349 PAPQMLVLGEMGELGPQADSLVEALGEYAQQAGIAGLVVMT 389


>gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
 gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
          Length = 452

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 155/479 (32%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL     ++   ++   +   + + +  IN +  DSR I+ G +F+ + G + DGH FI
Sbjct: 1   MKLT---LQEIASVVGAQNDVSL-FEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A               I S+ P ++V +  K     A     K   +++AV
Sbjct: 56  DTAFANGAVATFSEK---------NITSDYPYILVVDCLKAFQDLAQYYLEKMRVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                  P  +          
Sbjct: 107 TGSNGKTTTKDMIATILATTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEKI 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +           L    L  +     +   L  +        +           + +  
Sbjct: 157 VLEMGQDHLGDIAL----LSNLTHPHIAVVTLIGEAHLEFFGSREKIAEGKMQITQGMDG 212

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I  AD   +  + ++              G    +       +K  +       D 
Sbjct: 213 HGILIAPADKIINSFLPEKQKVI--------RFGADEDIFVTELEEHKNYLNFKTNFLDN 264

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   P+ G++   NA++A+ +   + +    ++  L +L++   R E+    +    +  
Sbjct: 265 EIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNLTRNRTEWKKAANGADILSD 324

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++++IL+   +I     G+ I V     +    +  +   +   L D A++  
Sbjct: 325 VYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELGDSELALHAAMIASL-DPAVIDR 383

Query: 418 DNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   + +  E+                +     E I+  +      D +++  KG
Sbjct: 384 IFLFGPLMQALADEVAQVYSVGKWYYFAQADQVDELTEQIQKVL---GPNDQILL--KG 437


>gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 466

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 128/378 (33%), Gaps = 23/378 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +Q G +FVA+ G   D H F+PQA AQGA A +               +  P 
Sbjct: 27  VHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQGAVAAIAQHGL--------REAGLPG 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +TR  L   A+    +    ++AVTG++GK++V   +  I +     +      + 
Sbjct: 79  LEVADTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVTQMIAAILRAWKPDAALATEGNL 138

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +            P+ L       +S  V  + +  +  G   +     +       N 
Sbjct: 139 NNDIGV--------PLTLL---RLRASHQVGVIELGMNHPGEIAYLAHLARPSVALVNNA 187

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H+++  T +A            L  +  A+  ADD Y+    + A        ++  
Sbjct: 188 QREHLEFMATVEAVAQENG-SVLASLDADGIAVFPADDVYTAVWRRLAGERQVLTFALAA 246

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   +      + +        +F          +   A  A+ L   + +     
Sbjct: 247 PADVTASARWEGDGWQVEAQTPSGPIEFSLHIAGRHNVKNALAATASALAAGVPLSFIAA 306

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389
                       R   V    R   +  D Y    +S++  ++ +  +   R++V+    
Sbjct: 307 GLSAFVPVKGRSRALSVPLQGRSLTLIDDTYNANPDSMQAAIQVLAELPGPRLLVMGDMA 366

Query: 390 CGGDRDQGKRPIMGKIAL 407
             G +        G+ A 
Sbjct: 367 EVGSQGPQFHDEAGRNAA 384


>gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
 gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
          Length = 455

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 133/426 (31%), Gaps = 44/426 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + +GH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-NGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                  P  +          
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +   RL                             A+ ++       
Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMD 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  +I   D+     +                G    L        K  +T +      
Sbjct: 211 SNGILIAPGDSIIDPYLPENQMVI-------RFGDHQELNVTDIREEKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++E LE + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVADEDIIEALESVQLTANRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +       +  ++   L+    D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQL 383

Query: 414 IVTDDN 419
           +   D+
Sbjct: 384 VFYGDD 389


>gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316]
 gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
 gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
          Length = 455

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 133/398 (33%), Gaps = 44/398 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 54  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIILEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  HV  E +   +    L G              H+++  +++    A+ ++     
Sbjct: 163 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +I   D      +                G    L+       K  +T      
Sbjct: 209 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+  + +    +
Sbjct: 262 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD 393
              Y     ++ +IL+    I +   G+ I +     +
Sbjct: 322 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKE 359


>gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
 gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
          Length = 455

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 136/410 (33%), Gaps = 47/410 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 54  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  HV  E +   +    L G              H+++  +++    A+ ++     
Sbjct: 163 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +I   D      +                G    L+       K  +T      
Sbjct: 209 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+  + +    +
Sbjct: 262 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIM 402
              Y     ++ +IL+    I +   G+ I +       G++       M
Sbjct: 322 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKELGEQSVDLHNQM 371


>gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232]
 gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes
           MGAS8232]
 gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 463

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/480 (15%), Positives = 156/480 (32%), Gaps = 53/480 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                 S  P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------SGKPHLLVEDCLKAFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                  P  +          
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +   RL                             A+ ++       
Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G    +       +K  +T +      
Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +  +    +  ++   L     D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +   D+ +  +  ++ +++            E+ ++ EA+   ++  LN  D +++  KG
Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILL--KG 439


>gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 427

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 143/435 (32%), Gaps = 59/435 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            ++  DSR +  G  FVA+ G +  G+ FI  A+A+GA  ++    +             
Sbjct: 28  RDLVWDSRQVTPGAAFVALPGTRTHGNAFIEDAVARGAAFVLTDRPHPKA---------- 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + V +  + L      L  + P  ++ VTG+ GK++    + Q               
Sbjct: 78  --VQVQDPWQALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQG-------------- 121

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             ++  A +  L TP  +     L          V +     G  Q  +   +   G  T
Sbjct: 122 --LAWPAPEGNLNTPPAL-ARFFLHLPPQAPGAVVELGIDRVGEMQELVFLAQPTIGVLT 178

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++   + +    A+ +       +   A   A            + +   V + 
Sbjct: 179 AIAPAHLEALGSLEVV--AREKSQLLQASRVRIASTQA----------ARYLSLPEVRTY 226

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G++      + +       +              P PG      AL A  +   +G D  
Sbjct: 227 GFEEGTFQGRDLTITPEGTRFR----YGQRTLHLPYPGYGPALGALAALAVAEVLGQDLD 282

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            V +HLE L + PGR   V        I+  Y     S+   L+++     GR IVV G 
Sbjct: 283 QVCQHLEALRLPPGRMHLVRRGGV-LFIHDAYNANPASVRAGLESLDRF-PGRKIVVLGT 340

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               G + +       ++A  +A  A+   +            ++     G +   +   
Sbjct: 341 MKELGPQAEAYHLEAARLAARVAQRAVFVGEY---------APQMARLFEGALAVTDAET 391

Query: 448 AIRTAIEMLNKQDVL 462
           A +     +   DV+
Sbjct: 392 ARQALKAQVRPGDVI 406


>gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9902]
 gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9902]
          Length = 449

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 153/457 (33%), Gaps = 38/457 (8%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
              + P    +  +  + +DSR +Q G  FV +VG   DGH F+ Q  A GA+A VV  +
Sbjct: 13  GAPLGPTPDPDMALGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSALGAQAAVVEQS 72

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           +S       + S+     VD+T K     A        + ++AVTG++GK++    ++  
Sbjct: 73  WSDP-----LPSDLLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTRELIRAA 127

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G      G  +          LT  S                  + +     G  +
Sbjct: 128 LAPLGDVHCSEGNNN----NDIGVPLTVLSADSHHC---------ALVIEMGMRGPGEIE 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 +      TN+G  HI    +++A   A        L  +   +I A DA  +  
Sbjct: 175 RLSRCTEPDVAVITNIGTAHIGRLGSREAIA-AAKCEITAALKSDGVVVIPAGDALLETA 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + +  +     + +           V A          +E        PL G     N L
Sbjct: 234 LSKVWSGRVVRVRLADDTP------VAADCIGAIDAGQLEVGAHRLPLPLEGRHNARNVL 287

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A  +   +G+DSA +      +     R    G  +        Y  +  ++   L  +
Sbjct: 288 LALAVADQLGVDSASLNAMEVSVPGGRNRRLVQGGLTLLDET---YNASPEAVMAAL-TL 343

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTDDNPRSEDPEKIRAEI 432
            +   GR   V G   +       +   +A   A    D  +V D            A  
Sbjct: 344 LSSQPGRRFAVLGTMLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRA----MANA 399

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
             G+P      +  +A +   E L   DV+++ A +G
Sbjct: 400 AAGLPRLAVVSSPEDAAKPLKEWLRPGDVVLLKASRG 436


>gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
 gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
          Length = 455

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 133/398 (33%), Gaps = 44/398 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 54  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  HV  E +   +    L G              H+++  +++    A+ ++     
Sbjct: 163 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +I   D      +                G    L+       K  +T      
Sbjct: 209 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+  + +    +
Sbjct: 262 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD 393
              Y     ++ +IL+    I +   G+ I +     +
Sbjct: 322 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKE 359


>gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 457

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 160/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+     +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALYLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L+  D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus
           denitrificans PD1222]
 gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paracoccus denitrificans PD1222]
          Length = 461

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 149/454 (32%), Gaps = 49/454 (10%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           R+  +  VS D+R I+ G +FVA+   + DGH F+ +A+ +GA A +VS           
Sbjct: 19  RDFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARALEKGACAALVSR------IPEG 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +  + P+LVV +    L         +    ++A+TG+ GK+S     +      G    
Sbjct: 72  VAPDAPLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKTSTKEMARVALAGQGRVHA 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                +               P+ LA+         V        +H  +   L  +   
Sbjct: 132 AEASYNNHWGV----------PLTLARMPEDTDFAIVEIGM----NHPGEIEPLARLARP 177

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +                     +       L +   AII  D   ++ +   A +A  
Sbjct: 178 HVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLIQPGTAIIPEDLPVTQLLRDCADDAAA 237

Query: 266 RVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            V+  G QG    LK        + +  +  E  DF               ++AA     
Sbjct: 238 IVIGFGQQGMARPLKAETLDGVTRVRARVLGETVDFMLASAGTHFVMNAVGMLAALSAAG 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR 383
             +  A       +  +  G  E    +  G R+  D Y     SL   L  +  +T GR
Sbjct: 298 ADVAEAAKHLSDWRPPLGRGAVE----DLDGIRLIDDAYNSNPTSLSAGLATLARLTGGR 353

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            + + G   +    +  +   +A D A  A+  V    PR     +   +   G+     
Sbjct: 354 RVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQGRRGMHA--- 410

Query: 442 KGNRIEAIRTAIEMLNK-------QDVLVVAGKG 468
                    TA E+  K        D+++V  KG
Sbjct: 411 --------ETAAELAGKVGELVASGDIVLV--KG 434


>gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis BS107]
          Length = 470

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 7/128 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +S D+R I AG +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWRVDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G +   
Sbjct: 73  GDDAPLLLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132

Query: 147 IGPTSTIS 154
           +   +   
Sbjct: 133 VASYNNHW 140


>gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 456

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 139/416 (33%), Gaps = 38/416 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +   + VS+DSR I  G +FVA+ G + DGH ++
Sbjct: 5   MTFSELVIHLDARLVGG---------DCSFHGVSTDSRGIAPGQLFVALTGPRFDGHEYL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q   +GA   +V              ++ P LVV +TRK L+   +        + + A
Sbjct: 56  EQVAGKGAVGALVEHEVE--------GASLPQLVVLDTRKALAQLGAMNRNAFVDKPVAA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+SGK++V   +  I +  G      G  +             P              
Sbjct: 108 MTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPE------------- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS  G     +   K      TN G  H+           A      E L 
Sbjct: 155 HDAAVIELGASRVGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDRIVEA-KGEILEGLD 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A++  DD        RA        ++      +H   +           ++    
Sbjct: 214 ATGTAVLNLDDKAFPIWQLRAGERKVMTFALNNPAADLHATDLRRDARGCPAFMLNSPLG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  L G   V NAL AA    A+G+    +   L  +  V GR      ++    I
Sbjct: 274 AAPVQLNLLGTHNVANALAAAAAACALGVSLEGIAAGLNNVQPVKGRAVAQIASNGVRVI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLA 410
              Y     S+   +  +    SGR ++V G  G+     +QG R +    A  ++
Sbjct: 334 DDTYNANPASINAAVDILTGF-SGRTVLVLGDIGELGDWAEQGHREVGAYAAGKVS 388


>gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
 gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
          Length = 459

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 146/381 (38%), Gaps = 27/381 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +QAG +FVA+ G + D H F+ QA AQGA A +     +         +  P 
Sbjct: 27  VHTDTRSLQAGDLFVALKGERFDAHDFLAQAKAQGAVAAIAHHGLAA--------AGLPG 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +++  L   A+    +    ++AVTG++GK++V   +  I +    +         
Sbjct: 79  LEVADSKLALGQLAAGWRSQFSLPLIAVTGSNGKTTVTQMIAAILRAWKST--------Q 130

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
             +   +       P+ L +  +  +   V  V +  +  G   +     K       N 
Sbjct: 131 AFATEGNLNNDIGVPLTLLRLRASHA---VGVVELGMNHPGEIAYLAALAKPGVALVNNA 187

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H+++  T +A          + L  +  A+  ADD Y+     R      RVL+   
Sbjct: 188 QREHLEFMATVEAVARENG-SVLQALGTDGIAVFPADDDYTAIW--RGLAGARRVLTFAQ 244

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            G      +     +  QV         DF   + G   V NAL A    +A G+   ++
Sbjct: 245 TGPADVTAQAQWSGDCWQVAARTPAGPLDFPLHIAGRHNVKNALAATACALAAGVPLPVI 304

Query: 333 LEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              L +   V GR         N     I   Y    +S+   ++ +  + + R++V+  
Sbjct: 305 AAGLSEFAPVKGRSRALTVRLANRVVTLIDDTYNANPDSMRAAIEVLAELPAPRLLVMGD 364

Query: 390 CGGDRDQGKRPIMGKIALDLA 410
            G   DQG  P   + A   A
Sbjct: 365 MGEVGDQG--PQFHEEAGRYA 383


>gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
 gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
          Length = 459

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 163/450 (36%), Gaps = 39/450 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
               + + V+ DSR +  G +F+A+ G + DGH F+  AIA+GA A +V     +     
Sbjct: 20  GASLQFSGVAIDSRQVSPGDLFIALPGERVDGHDFVDAAIARGAIAALVERPVQV----- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P L V N    LS             ++A+TG+ GK++V +  + I   +G + 
Sbjct: 75  ----SIPCLQVSNCLDALSEIGRASRDLSASVVVAITGSCGKTTVKNLCRSIFSEAGSTV 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G                  P+ LA+            V + A+  G   H     + 
Sbjct: 131 ATAGN----------YNNEIGVPLTLARLQDDTR---YAIVEMGATKRGDIAHLCTLARP 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +  N    H++   +     + K  +++  L     AI+  D  +      R   AG
Sbjct: 178 SITTVLNAMEAHLEGFGSVADVADIKAEIYDG-LGSSGAAIVNLDQPWVPLWRDRIAQAG 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            + LS         L          +    T+ + G+     +PLPG   V NAL AA L
Sbjct: 237 AQALSYSLDDSSADLYVSGLQECGLEGSAFTLHIRGESRALKYPLPGRHSVANALAAAAL 296

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            IA G+    ++  LE     PGR +     +    I   Y     S+   +  +   T+
Sbjct: 297 AIAAGLSLDQIVVGLEHAQAEPGRLQSERLGNDKTLIDDSYNANPGSVRAAITLLAA-TA 355

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           G  +++ G     G     +   MG+    LA ++ +T      E    +R  +      
Sbjct: 356 GESLLILGEMLELGAESPERHAEMGE----LARLSGITRFVGVGE---AVRPAVEAFGAN 408

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +R        ++L   D ++V  KG
Sbjct: 409 GQWFASREALTPKLADLLGASDTILV--KG 436


>gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
 gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
          Length = 430

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 133/398 (33%), Gaps = 44/398 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+           ++ +  +  +  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKLS------LHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A +                  P L+V +  K   + A     K   +++
Sbjct: 54  FIEMAFDNGAIATISEKEIE----------GHPYLLVSDALKAFQVLAQYYIEKMNVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  I   +  +    G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMIAAILSTTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIILEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  HV  E +   +    L G              H+++  +++    A+ ++     
Sbjct: 163 HLGDIHVLSEIAKPRIAVVTLIG------------EAHLEFFGSREKI--AEGKMQITDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +I   D      +                G    L+       K  +T      
Sbjct: 209 MSSDGILIAPGDPIIDPYLPANQMTI-------RFGHDQELQVTELKEEKHSLTFKTNAL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+PG++   NA+VAA +   + +    +++ LE L +   R E+  + +    +
Sbjct: 262 EHQLRIPVPGKYNATNAMVAAYVGKLLAVAEEDIVDALENLQLTRNRTEWKKSANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD 393
              Y     ++ +IL+    I +   G+ I +     +
Sbjct: 322 SDVYNANPTAMRLILETFSAIPNNDGGKKIALLADMKE 359


>gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 459

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 130/369 (35%), Gaps = 28/369 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   L   I   ++   KI  VS DSR I+   +++ IVG K DG +FI + 
Sbjct: 1   MIERSLDQISKMLGGEISDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G+ A ++       +F      N P ++VD+T+K L   A     K    I+A+TG+
Sbjct: 61  QNAGSPAFLIDK-----NFKIPKSINIPYIIVDDTQKALRDLARAYRKKLDIKIIAITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++  + +  +           G  +            +                 + 
Sbjct: 116 NGKTTSKNIIHSVLSEKYKVEKTHGNLNNEIGLPLTILDFSED-------------TDIG 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G      +  +      TN+G  H+   +T++    AK+    E L  +  
Sbjct: 163 VVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGIAKAKL-EILEGLKDDGI 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD     ++K+   +          G    +            + +   KD ++ 
Sbjct: 222 FLYNGDDE----ILKKVLPSYDIKQKTISFGMGDKVDFKVEAREYTSTSTNFSYKDENYS 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            PL G  QVYN  +A  +     +    +   L K      R E       G  I  D Y
Sbjct: 278 VPLLGSHQVYNGALAVLIGKLFDLSYDQIKVGLSKSSNNANRNEL--IERDGFDILDDAY 335

Query: 363 AHTSNSLEM 371
                SL+ 
Sbjct: 336 KSNPQSLKQ 344


>gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 496

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/489 (16%), Positives = 148/489 (30%), Gaps = 47/489 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+   +          + I   V  DSR + +G +FVA+ G K DGH +   A
Sbjct: 1   MITLRLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAATA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPIL----------VVDNTRKFLSLFASRLYGKH 113
           + QGA  ++ +    +        +                V    + ++  A  +  K 
Sbjct: 61  MDQGAAGVLAARPVGVPAVIVPPATEVDHHSYATEHDTDGSVAAVLEGMAKLARHVVDKL 120

Query: 114 PEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ +TG++GK+S    V  I + +G +    G  +            T      
Sbjct: 121 SARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCT------ 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                   +       + A S G   H         G   N+G  H+    ++     AK
Sbjct: 175 -------ETTKYLVSEMSARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARAK 227

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L E  LP +  A++ ADD Y   +  R         ++    +           ++  
Sbjct: 228 GELVEA-LPADGIAVLNADDDYVAAMADRTSATVWSFSTLHKPVRVAATDIRLDNLSRPT 286

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA------LVLEHLEKLHVVPG 344
            T+                       VA  L  A    +A      +             
Sbjct: 287 FTLIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAH 346

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCG----GDRD 395
           R +     +    I   Y     S+   L+ +    +      R I V G       D  
Sbjct: 347 RMDVHHAGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDAT 406

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                +M  +A    D+ +V   +   E+   +           I   +  +A    +++
Sbjct: 407 ADHVELMRTVAEQGIDLVVVVGTD---ENARAMINAAAAMGLRAIPTADTTQAATEVLKV 463

Query: 456 LNKQDVLVV 464
           L + DV++V
Sbjct: 464 LGRGDVILV 472


>gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1059]
          Length = 456

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 157/481 (32%), Gaps = 55/481 (11%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLTTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIINEFLPADCKLV-------RFGPDADIFLTRLEERKNSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EERIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467
           TD     +D E +     EI   G   +  K +     E ++ A+   L   D +++  K
Sbjct: 381 TDLFLYGQDIEALYDYAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQVLL--K 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
 gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
          Length = 468

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 136/382 (35%), Gaps = 30/382 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E+ I  + +DSR  +AG  F+A+ G + D H F+ Q + +G +  +V     L      
Sbjct: 33  PEQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNKGCQVAIVERPLDL------ 86

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSS 144
              +   LVV +TR+ L    +    ++P+  ++A+TG+SGK++    +  I  R   + 
Sbjct: 87  ---DMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTTKEMLGSILSRLAPTL 143

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +            T                    + + AS  G   +    ++ 
Sbjct: 144 VTRGNLNNDLGVPMMLLELTAE-------------HQYAVMELGASHQGEIDYTSQLVQP 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+G  H+     ++    AK  ++  +    +  I  ADD          H   
Sbjct: 191 QVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTD----AIRHAVQ 246

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              +    +G  I+  ++  +    Q  +       +   P  G   V NA  A    +A
Sbjct: 247 TTQVLSFGEGGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAFALA 306

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGI    ++  LE      GR  F+        I   Y     S+    + +   +  ++
Sbjct: 307 IGISLDDIVIGLELAQGAKGRLNFISHKQH-LFIDDTYNANPTSMRAAGEVLAQQSGIKV 365

Query: 385 IVV--FGCGGDRDQGKRPIMGK 404
           +V    G  GD    +   +G+
Sbjct: 366 MVTGDIGELGDAAAVEHYRLGR 387


>gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
 gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
          Length = 457

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/485 (16%), Positives = 161/485 (33%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL+        E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKLR------IHEVAQVVGAKNDISIFEDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  ++   D   ++ +            V   G+   L+    +  K  +T      
Sbjct: 209 MSSNSLLLAPADPVVEDYL-------PTDKKVVRFGQGAELEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 NQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQHLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNR---IEAIRTAIEMLNKQDVLV 463
             I        ED  ++        P      F +  +R    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDRDQFEDLVKQVKESLGTNDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase
           protein [Xanthomonas albilineans]
          Length = 501

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 143/367 (38%), Gaps = 19/367 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +  I+ +S D+R + AG ++VA+ G + DGH F   A  +GA A++V       + 
Sbjct: 17  LHGDDVAIDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGASALLVERRLPQIE- 75

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   P +VV +T+  L+  A+ +       + A+TG++GK+SV + +  I Q    
Sbjct: 76  -------LPQIVVADTQLALARIAAGMQRGRATRVAAITGSNGKTSVKALLLAILQ---Y 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G +   +    +N +  P  +  A   +  +        + A   G   +  D  
Sbjct: 126 ACRLDGGSVYANPGNHNNEIGLPLAVIAAPDDADYAI-----YEMGAGKPGDIAYLTDIA 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H++   +       K  ++   LP +  A+I  DDA+     ++   
Sbjct: 181 PPRVSLVNNIAPAHLERMGSLLGVAQTKGAIYAA-LPADGTAVINIDDAFGLWFEQQLSA 239

Query: 263 AGCRV--LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           A            G  +   ++    ++    +     + +   PLPG   + NAL AA 
Sbjct: 240 ASRPRVLRFGLQHGAHVTATRIRMAADRTHFVLLTPQGEAETTLPLPGRHNLLNALAAAA 299

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A+ +  A +   L ++  VPGR            I   Y     SL   +  +  I 
Sbjct: 300 LALALDVAPARIAAGLAQVQPVPGRQISHTLPGGAVLIDDSYNANPGSLAAAIDALAAIG 359

Query: 381 SGRIIVV 387
             R +V+
Sbjct: 360 GERWLVL 366


>gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
 gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
          Length = 449

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 143/450 (31%), Gaps = 41/450 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            E  +  V  DSR I+   +FV + G + DGH F  QA   GA A + S        +  
Sbjct: 18  NETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQAKDNGAIATLWS------HPTIE 70

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              +  ++ V +T K     A     K    I+ +TG++GK++    V+ +  +   +  
Sbjct: 71  PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKTTTKDMVEAVMAQKYQTYK 130

Query: 146 QIGP----TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             G          +       T    + +    +            +A++  L       
Sbjct: 131 TQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSRLAEPDAAAITL------- 183

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                        +++   +             ++      PA     + +   + +   
Sbjct: 184 -------IGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNLTQTIE 236

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G     +          +          T+           P+ G + V NAL+A G+
Sbjct: 237 TFGLTEGDLQGDIVEESQDQTIFTVAGTTFTL-----------PVLGGYNVKNALIAIGI 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
               G+    + E L    +   R ++V   +    +   Y     ++ ++L + R +  
Sbjct: 286 GRHFGVADEAIKEGLAHFQLTKNRTQWVTAGNGAAILSDIYNANPTAMGLVLDSFRKLPL 345

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLAD--IAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +GR I V     +       +  ++A  L D    +           +++    +     
Sbjct: 346 AGRRIAVLADMLELGPDSAQMHEQMAAHLDDSFQLVFLYGKEMQALQKRLANTALADKVR 405

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +     + + I + IE L   D LV+  KG
Sbjct: 406 YFAIDEKPQLIASLIETLEPSDSLVI--KG 433


>gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
 gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
          Length = 470

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 136/375 (36%), Gaps = 24/375 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ IN+VS+D+R      +F+A+ G + D H FI QA+AQGA A++       Q     
Sbjct: 23  PQQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQALAQGAIAVITQQPLDEQ----- 77

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               TP ++V++TR  L L  + +  +     +A+TG++GK++V   +  I  +      
Sbjct: 78  ----TPHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGKTTVKEMLAAIIGQQYNVLA 133

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +               P+ L       +      V + A+  G   +     +  
Sbjct: 134 TAGNFN----------NDIGVPLTLL---RLEAQHQYAVVELGANHAGEIAYTTSLTRPD 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                N+   H++   +      A      + LP++  AI   +  Y             
Sbjct: 181 VAILNNVSAAHVEGFGSVHGVAKA-KTEIFQGLPEDGLAITPYESEYLPCWRNVRAGKRL 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +   +  Q      +       +    +S+  + +     L G   V NAL A+   + +
Sbjct: 240 QTFGLSEQADVRASQIELNSLGQPTFKLSINDQHWTVSLQLSGLHNVKNALAASAAALEV 299

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+ +  +   L  +  V GR   +        I   Y  +  S +  L  + +   G  I
Sbjct: 300 GMSAEEIATGLANVAPVKGRLTPMQLTENVTVIDDTYNASVASTKAALDLLGSY-QGTTI 358

Query: 386 VVFGCGGDRDQGKRP 400
           +V G   +     R 
Sbjct: 359 MVLGDMAELGAEARA 373


>gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
 gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
          Length = 449

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 152/447 (34%), Gaps = 43/447 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+ + GN+ DGH ++  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIVLQGNR-DGHDYVLDAIDKGAAAVIVSKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I++VD+  + L   A           +A+TG+ GK+S    ++ + Q   L     G  
Sbjct: 76  -IILVDDCFETLQKMALYKRENSKAKFIAITGSVGKTSTKEALKILLQYDSLVFASRGNF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +                  L    S           +  +  G  +  +  +K      T
Sbjct: 135 NNRLGL-------------LINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +    A      E   K   A+I AD     +++    N     +  
Sbjct: 182 NISEAHLEFFNSLEEIAEA-KCEIFENFSKNDIAVINADINCYNKIVSILKNLSINRVYN 240

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                    + V   +  +QV +      K  +   P        N      +   +G D
Sbjct: 241 FGISHNTPAQLVLYENLGEQVHLKYKINNKSLEITIPFIPRHFAENYTAILLIIDILGKD 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
             +   HL  +    GR E +        I   Y  +  S++  L+ ++ + +     + 
Sbjct: 301 IEIAANHLANIPPNKGRGEII-NIQNSRIICDYYNASPQSMKAALEYLKQVPAENKTAII 359

Query: 389 GCGGD-RDQGKR---PIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIE 441
           G   +  +  KR    ++  I         +   N +      P KI   +        E
Sbjct: 360 GDMLELGENSKRLHEELVPYILDAGCSKVYLVGVNTKYIYDLLPPKI---VKKYFKNVDE 416

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  I    ++    +++++  KG
Sbjct: 417 L------ITHITDLFESNELILI--KG 435


>gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
 gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
          Length = 474

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 143/474 (30%), Gaps = 40/474 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ +     P    +   +I+  V  DSR ++AG +F A  G   DGH +   
Sbjct: 1   MIALSLAEIADITGGRPHDIPDPSVRISGPVVIDSRKVEAGSLFAAFAGEHVDGHAYAE- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       A      P +VV +  K L   A  +  +   +++A+TG
Sbjct: 60  ----------RAVAAGAAAVLAARPVGVPAIVVPDVEKALGALARAVVERLGTDVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ Q    + +  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQVLQSHAPTVWTPGSLNNEIGLPLTALQATAE-------------TRH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKE 241
             + + A   G   +         G   N+G  HI     ++    AK  L E      +
Sbjct: 157 LVLEMGARGIGHIAYLTGLTPPRIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPAEAD 216

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               +   D      M     A   +            +       +   T+       D
Sbjct: 217 GGVAVLNADDLLVRAMSARTKARTVLFGEAEDADVRATEVRMTPGGRPAFTLHTPTGCSD 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               L GE  V NAL AA +   +G+    +         +   R E          +  
Sbjct: 277 VTLRLYGEHHVSNALAAAAVAHVLGMSAMEIATALSGAGTLSRWRMEVTERADGVTIVND 336

Query: 361 DYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-A 410
            Y     S+   L+ +  +      T GR   V G     GD    +   +G++A+ L  
Sbjct: 337 AYNANPESMRAALRALVAMGGAARATGGRTWAVLGPMAELGDASLAEHDAVGRLAVRLNV 396

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +       S        E   G    +   +   A+      L   DV++V
Sbjct: 397 SKLVAVGGREASWLQLGAYNEGSWGEESVL-VSDAQAAVDLLRSELRPGDVVLV 449


>gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
 gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
          Length = 487

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 155/462 (33%), Gaps = 52/462 (11%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV------SSAYSLQD 81
           R +   S D+R ++ G +F AI G   DGH F+  A+ +GA A VV              
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALDKGAGAAVVAEVRAKEFEGVGPV 84

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
            +     + P+L   +  + L L A    G     I+AVTG+ GK+     ++ +    G
Sbjct: 85  LAVPGEGDDPVL---DAMRRLGLAARARTG---AAIIAVTGSVGKTGTKEALRHVLSAQG 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +   +   +               P+ L                +  +           
Sbjct: 139 ATHASVASYNNHWGV----------PLTL---TRMPEDTRFGVFEIGMNHGAEILPLTAM 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T +   HI++ ++  A  +AK  +F   L     A+I  D+   + ++  A 
Sbjct: 186 VRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSG-LKPGGVAVINRDNPNYERLLAHAQ 244

Query: 262 --NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              AG  +    ++   +   ++    +   V  +V G    +    PG     N+L   
Sbjct: 245 ASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLGVL 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILKNI 376
               A+G D A     L  L    GR E        G    VD  Y     S+   L  +
Sbjct: 305 ACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALATL 364

Query: 377 RTIT---SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             I     GR I V G   +     +   R +   +A +  D+               + 
Sbjct: 365 AGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVF---------AVGPLM 415

Query: 430 AEIIHGIPGFI--EKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           A +   +P  +        E +  A+   L   D ++V  KG
Sbjct: 416 AHLFEALPMTVRGTAAPTAEGVTDAVLATLRPGDAVMV--KG 455


>gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
          Length = 476

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 150/461 (32%), Gaps = 55/461 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +QAG +FVA+   + DGH F+ QA+ +GA A +VS           +  + 
Sbjct: 24  TGVSIDTRTLQAGDLFVALTDVR-DGHDFVKQALDKGAAAALVS------HVPPGVPEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V++ +  L         +    ++AVTG+ GK+S    +  +    G +   +   
Sbjct: 77  PLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTKEMLLAMLSDQGRAHASVASY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+         +        +H  +   L  +     +  
Sbjct: 137 NNHWGV----------PLTLARMPRDTEFAVIEIGM----NHPGEIAPLAKMAAPHVALI 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                              +     E +     AI+ AD   S  +M +A +   R ++ 
Sbjct: 183 TTVAAAHLEAFDDITGIAVEKASIFEGVVPNGVAILNADVDTSAILMAKAQDCRLRDITF 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G  G    L +     +   V   +      +    PG     NAL A  +  A+  D A
Sbjct: 243 GEHGYDFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAIAVMAALRTDVA 302

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRI-------YVDYAHTSNSLEMILKN-------- 375
           L L  L +     GR +                     Y     S+   L+         
Sbjct: 303 LALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAEVTN 362

Query: 376 -IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            I  ++ GR I   G   +    +  +   +A   A   I         D       ++ 
Sbjct: 363 DIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEI---------DVIHCIGPVMR 413

Query: 435 GIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVVAGKG 468
            +   + +  R        EA       ++  DV++   KG
Sbjct: 414 ALYDALPEPQRGMWFEGAEEAATHVKTHIDSGDVVL--AKG 452


>gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
 gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
          Length = 430

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+D+R+I+   +F A+ G   +G+ F  +A+ +GAE  +V      +D         
Sbjct: 14  SGVSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIVDEEAYAKDQDN------ 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + V++    L   A+         +LA+TG++GK++    +  +  +   +    G  
Sbjct: 68  -YIFVEDCLDALQQLATFHRHFLGIPVLAITGSNGKTTTKELINAVLTKKYKTISTTGNL 126

Query: 151 STI 153
           +  
Sbjct: 127 NNH 129


>gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 453

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 160/480 (33%), Gaps = 38/480 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M +++++     +L+           +  +  V +DSR +  G +FV + G K D H F+
Sbjct: 3   MTVREIVAACGGKLL-------CGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFL 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A +      ++   A        + VD+T+  L   A+    +    ++ +
Sbjct: 56  HAAFASGAAAALTQEHMRMEAEEA-------WIAVDSTQLALQQIAAAYRQRFSIPVVGI 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++                   G          ++++  P          +    
Sbjct: 109 TGSAGKTTTKEMTALALSAGYKVMKTGGN--------HNSQIGLP-----LMMFQFSWEH 155

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V +  S  G +  RL  + +      TNLG  HI   +TQ      K+ + +    
Sbjct: 156 EAAVVEMGISDFG-EMARLAQVAEPKYAVMTNLGITHIGQLKTQGNILREKLHITDRFT- 213

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           + S   +  DD     +  +          + +         V       +  ++   + 
Sbjct: 214 QGSVLFLNGDDPMLAGLRGKTGYETVFYGRLPWCDFRAEGITVQEETTAFRC-LAPGSES 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P+ G   V +AL A  +   +G+        L     +  R +    N     I 
Sbjct: 273 VEVTLPVLGMHHVLDALAALAVAERLGVPLKRAAAALRDYRPLAMRQQIYHVNEV-AVID 331

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
             Y  +  + +  L  +    +GR + V       G+  +     +G  A +     ++T
Sbjct: 332 DSYNSSPGAAKSSLSVLAGFRAGRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLT 391

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
                     +    +  GI       N  +A       L+  D ++V G +G  T  IV
Sbjct: 392 VGQEAK-AVAEGARSVRAGID-CRVLDNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIV 449


>gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 457

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 135/433 (31%), Gaps = 45/433 (10%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+          DSR I+AG +F+ + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLAAKNDVSQFENVTFRNAEFDSRLIEAGDLFIPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A  QGA A +     +            P ++VD+        A     K   ++L
Sbjct: 54  FIATAFDQGATATLSERPVAEG----------PYVLVDDVLAAFQALAQYYLEKTGVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    AK ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSEIAKPKTGIVTLVGEAHLEFFGSRTEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   ++   D    + +                G    +        K  +T      
Sbjct: 209 MKKGGLLLVPADKIVNDFLPDQQKVV-------RFGPDADICLTRLEERKDSLTFEANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+  + + +   +L +   R E+    +    +
Sbjct: 262 EQAIDLPVTGKYNATNAMIASYVALQEGVSESAIRQAFAQLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+    I     GR   V     +     + + G +   L    I 
Sbjct: 322 SDVYNANPTAMRLILETFSAIPASQGGRKAAVLADMKELGADSKLMHGAMITSLNPEVI- 380

Query: 416 TDDNPRSEDPEKI 428
           TD     ED E +
Sbjct: 381 TDLFLYGEDMEAL 393


>gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
 gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
          Length = 429

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 135/393 (34%), Gaps = 49/393 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ DL+   FPE                I +V  DSR ++ G +F AI G    G+  +
Sbjct: 1   MKIIDLLRDYFPE--------KKILESMDIKDVCMDSREVKKGSLFFAIKG----GNNHV 48

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AI  GA  ++             +  +   +  ++T  F+   A      +   ++A+
Sbjct: 49  EEAIKNGAVLVIYDRK-------DLLIQDENTIFTEDTVNFMQKLARDYRKSNQTKVVAI 101

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +   +    G  +             P               
Sbjct: 102 TGSNGKTTTKDIIYSVLSQRFRTKKTQGNHNNHIGLPYTILNAQPE-------------D 148

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V  + +  S  G             G  TN+G  H++Y + ++  F AK  L E +  K
Sbjct: 149 EVLVLEMGMSDFGEIDLLCSIALPDYGIITNIGESHLEYLKNKENVFKAKGELLEYVHSK 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +              +K  H                 ++       K            
Sbjct: 209 NTIVFG------DDYYLKDIHGIKVGYGDENTFKISEFIENDKGAEFKLAGK-------- 254

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +  P+ GE  V NA  A  L + +G+  + + + L+ + + P RF+ +    +   I  
Sbjct: 255 TYRIPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVELTPMRFQKI-EKGKKLYIND 313

Query: 361 DYAHTSNSLEMILKNIRTITSGR--IIVVFGCG 391
            Y     S+++ ++    + + R   I+V G  
Sbjct: 314 AYNANPTSMKLAIETFDKLYNKRACKIIVLGDM 346


>gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii SDF]
 gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii]
          Length = 466

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 139/395 (35%), Gaps = 31/395 (7%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
           Q  + +I  + +DSRH ++G  F+A+ G + D H F+ Q  A G +  +V      +   
Sbjct: 31  QIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPIDAE--- 87

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGL 142
                    LVV +TR  L    +    ++ +  ++A+TG+SGK++    +  I  R   
Sbjct: 88  ------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRLAP 141

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +          L  P        L          + + A+  G   +    +
Sbjct: 142 TLINRGNLNND--------LGVP-----MMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N+G  H+     +     AK  ++  +LP+    +   DD       +    
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDD----FTAEIREA 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A    +     G  +   ++  +       +           P  GE  V NA  A    
Sbjct: 245 AKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFA 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+G+    +++ LE+     GR  F+        I   Y     S+    + +      
Sbjct: 305 LALGVSLEDIVKGLEQAQGAKGRLNFIQKAPH-LFIDDTYNANPTSMRAAAQVLLQQNGI 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
           +++V+   G  GD    +   +G+    L  D  +
Sbjct: 364 KVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIV 398


>gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 452

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 147/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FV IV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +    A  N     I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++      +I
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK353]
          Length = 456

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 160/484 (33%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSDRPVAEGA----------YILVDDVLAAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+  A + +   +L +   R E+   ++    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVAEAAITQSFSELELTRNRTEWKKASNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI S   GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPSNPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549]
          Length = 453

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 147/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FVAIV    DGH FIP AIA  A+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSAIANRAKAILVSKKQGL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +       N   V I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRVTSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++      +I
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKVFL 385


>gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 471

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 147/402 (36%), Gaps = 35/402 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+   +   +   +  ++ ++ D+R + AG +++A+ G + DGH F   A+A+GA A++V
Sbjct: 8   LLAHWAGGELHGPDVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAVALLV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                       +  + P L+V+++   L+  A+ +       ++A+TG++GK+SV + V
Sbjct: 68  ER---------LLDVDAPQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALV 118

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             + Q++G +    G         ++N +  P  +  A   +  +        + A   G
Sbjct: 119 LSVLQQAGQAYANPGN--------RNNEIGLPLAVIDAPEDADFAI-----YEMGAGKPG 165

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            D   L  I     S  N                          LP    A++ ADDA+ 
Sbjct: 166 -DIAYLTDIARPDVSLVNNIAAAHLERMGDLLGVATTKGAIYAALPAGGTAVVNADDAFG 224

Query: 254 KEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               +           +   G      +  + V A     +  +     +      LPG 
Sbjct: 225 AWFEQEVVRPAGTGRQLLRFGLDASAEVTARDVQAGAEGSRFVLVTPQGEAAIELALPGR 284

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL AA + +A G+  A +   L +   V GR    G       +   Y     S+
Sbjct: 285 HNVRNALAAAAIGLACGVSLAAIAAGLGQARPVAGRQVAHGLPGGVVLVDDSYNANPGSV 344

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
              +  +   +     +V G         R +  + A   AD
Sbjct: 345 AAAIDALAA-SGDEAWLVLG-------DMRELGPEAATLHAD 378


>gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae OXC141]
          Length = 457

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 159/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLVPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L+  D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 452

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 149/414 (35%), Gaps = 27/414 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+ N +    +      I+ VS+DSR+I+A  +FVA++G + D H F+  A  
Sbjct: 1   MILMSLNEVAN-ICQGRLNGVNTSISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVAEE 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA A++VS             S+ P ++V +T K   L    ++ +     +A+TG+ G
Sbjct: 60  QGAVALLVSHEVD---------SSLPQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   +  I +RSG      G  +           + PS                + +
Sbjct: 111 KTTVKEMLASILKRSGEVLATAGNFNNEIGVPLTLLRSQPS-------------NDFSVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++       N+   H++   + +    AK  +FE  L + + AI
Sbjct: 158 ELGANHQNEIAYTTQLVRPDVALVNNIAAAHLEGFGSIEGVAKAKGEIFEG-LKENATAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLF 304
              D            N      S        H   +          T++          
Sbjct: 217 YNLDSNGLPRWSDLFENKTVLSFSQENNQADFHASNIEINGLGASSFTLNTPVGSIVVSL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  V NA+ AA L +      A + + L+ L  V GR       S    I   Y  
Sbjct: 277 TIIGKHNVSNAVAAAALAVQANCTLADIQQGLQSLENVKGRVAVEVLPSGLKVIDDTYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           +  +++  +  +      R +V+      G         +G+ A       ++T
Sbjct: 337 SVPAMKAAVDLLGGFNGSRWLVLGNMAELGKESLALHREVGEYAAPYQFEQVIT 390


>gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
 gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
          Length = 468

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 148/423 (34%), Gaps = 35/423 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +   +  +  VS+D+R + A  +F+A+ G + D H F   A+ 
Sbjct: 1   MIEVQLAQLADVLGA-ELIGNDITVANVSTDTRTVSAHTLFIALKGERFDAHDFCQNAMD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVT 121
            GA A++VS    ++          P LVV +T + L L  +     +   H    +A+T
Sbjct: 60  NGAAALLVSRHLPVE---------LPQLVVKDTHQALGLLGAWLKQSMEQDHGLKTIALT 110

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++V     +I  + G      G  +               P+ L +  +      
Sbjct: 111 GSCGKTTVKEMAAEILSQKGNVLSTAGNFN----------NDIGVPLTLLRLTAE---HE 157

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + A+      +  + +K       NL   H++   +      AK  +FE L    
Sbjct: 158 FAVIELGANHQQEIAYTTNLVKPQVALVNNLAAAHLEGFGSLAGVAKAKGEIFEGLTAPL 217

Query: 242 S-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISV 295
           +      AII  D                +  S+           +      +   T+  
Sbjct: 218 NDSGLSTAIINVDSNDLAMWQPLLAQHAVKTFSLTDIDADFSATDIFINSEGRACFTMRT 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D    L G   V NAL AA L + +G     V   LE++  V GR +        
Sbjct: 278 SAGTIDITLTLAGIHNVSNALAAAALAMTVGATLEQVKAGLEQVVNVKGRVDVSHPREGL 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIA 413
             I   Y  +  S++  +  + + T  R  V+      G+        + + A+  A   
Sbjct: 338 RLIDDTYNASVASVKAAIDLLASFTGQRWFVLGDMAELGEESASLHREVAEYAMTKALDK 397

Query: 414 IVT 416
           + T
Sbjct: 398 VFT 400


>gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 459

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 131/369 (35%), Gaps = 28/369 (7%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I +   ++   L   I   ++   KI  VS DSR I+   +++ IVG K DG +FI + 
Sbjct: 1   MIERSLDQISKMLGGEISDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEEC 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G+ A ++       +F      N P ++VD+T+K L   A     +    I+A+TG+
Sbjct: 61  QNAGSPAFLIDK-----NFKIPKSINIPYIIVDDTQKALRDLARAYRKELDIKIIAITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++  + +  +           G  +          LT                  + 
Sbjct: 116 NGKTTSKNIIHSVLSEKYKVEKTHGNLN----NEIGVPLTILDFSE---------DTDIG 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G      +  +      TN+G  H+   +T++    AK+    E L  +  
Sbjct: 163 VVEMGTDDFGEISVLTNIARPDMAMITNIGDAHLLKLKTREGIAKAKL-EILEGLKDDGI 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD     ++K+   +          G    +            + +   KD ++ 
Sbjct: 222 FLYNGDDE----ILKKVLPSYEIKQKTISFGMGDKVDFKVEAKEYTSTSTNFSYKDENYS 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-Y 362
            PL G  QVYN  +A  +     +    +   L K      R E       G  I  D Y
Sbjct: 278 VPLLGSHQVYNGALAVLIGKLFDLSYDQIKVGLSKSSNNANRNEL--IERDGFDILDDAY 335

Query: 363 AHTSNSLEM 371
                SL+ 
Sbjct: 336 KSNPQSLKQ 344


>gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 539

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 83/489 (16%), Positives = 148/489 (30%), Gaps = 53/489 (10%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            L      E     +I      E+   +  ++DSR +Q G +FVA  G   DGH FIP A
Sbjct: 3   KLSAAQIIEATGGTAIGLEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMA 62

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILA 119
             +GA   +V      +          P + V +    +   A     +        ++ 
Sbjct: 63  FERGATLALVEREVLDEQGVPY-----PSIQVPDVVLAMGDLARYSIEQMRAQGELTVIG 117

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    +  I    G +   +G  ++              P+ +        S
Sbjct: 118 ITGSAGKTTTKDLLAAIFTPEGPTVAPVGSYNSE----------VGVPLTVF---RADES 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + A   G  ++  +      G+   +G  H             K  L E + P
Sbjct: 165 TRYLVIEMGADHVGNIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQP 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
             S A+  ADD     +  R+             G      +        + T +   + 
Sbjct: 225 TGSLAL-NADDERVLRMASRSVAPITYFGVGEKTGANGQPYERYVAALNLRTTDAGCPEF 283

Query: 299 --------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFV 349
                   +++    L GE  V+N L AA +    GI    +   L K       R    
Sbjct: 284 TLRLPDGSEYEISSQLIGEHHVHNLLAAATVAYNSGISGEKIARALNKAAAASKWRMART 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI---------TSGRIIVVFGCG---GDRDQG 397
                   I   Y     S+   L+ +  +            R   V G     GD    
Sbjct: 344 DRADGVTVINDAYNANPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVE 403

Query: 398 KRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIE 454
           +   +G++ + +     I   D    E      A  + G             EA +    
Sbjct: 404 EHDRIGRLVVRMNISKLIAVGD----ETKPTYNAAHLEGSWGNEATWVKTPEEAEQILRA 459

Query: 455 MLNKQDVLV 463
            +   D+++
Sbjct: 460 EVRPGDIVL 468


>gi|282880729|ref|ZP_06289430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305391|gb|EFA97450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 446

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 120/373 (32%), Gaps = 32/373 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR      IF A+ G   +G+ F   A+ +G    V+            I+ +   
Sbjct: 16  VTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVIDQK------EYQIQQDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++  + L   A+    K    I+ +TGT+GK++    +  +        +  G  + 
Sbjct: 70  ILVEDCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +     T                 +  V + AS  G  Q  +  ++      TN+
Sbjct: 130 EIGVPKTLLRLTSE-------------HEIAVVEMGASHPGDIQSLVTVVEPDYALITNV 176

Query: 213 GRDHIDYHQTQQ--AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           GR H+    + +      A++  + E+        I  D+ + +E+ +       R+   
Sbjct: 177 GRAHLQGFGSFEGVKRTKAELYDYMEVNKPNGKVFINQDNPHLQEMFQAHCPHVHRISYS 236

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA----------LVAAG 320
             Q   +  +     +N           + +        ++V+            L A  
Sbjct: 237 QTQQTGVSYQGKICSNNPFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAIS 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G+    +   L        R +          I   Y     S+E  L N   + 
Sbjct: 297 IGHYLGVQPHEINHALTHYTPSNNRSQLE-VTKHNNLIVDAYNANPTSMEAALVNFAQMQ 355

Query: 381 SGRIIVVFGCGGD 393
               + + G   +
Sbjct: 356 VAPKMAILGDMRE 368


>gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
 gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
          Length = 473

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 158/446 (35%), Gaps = 27/446 (6%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +++ ++ DSR ++ G  F+A+ G + DGH F   AIA GA  ++V+     Q  +    +
Sbjct: 26  RVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIAAGAALVIVTDDLPEQALAFAREA 85

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I  V + ++ LS  AS    +   +++ VTG+ GK++      Q+      +    G
Sbjct: 86  GCCIARVPDAQQALSALASAWREELSAHVVGVTGSVGKTTTRGLAAQVLSARFKTESTKG 145

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAG 207
                     +N L  P  +  A             V +     G    RL  + +    
Sbjct: 146 N--------FNNELGLPLTVLTA-----PKDCEALVVEMGMDGRG-QIARLAAVARPERA 191

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-----RAHN 262
             TN+G  H++Y  T++    AK  + E L   E  A + AD  ++  +++         
Sbjct: 192 IITNVGTAHLEYLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIEHARLAERGI 251

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              R    G+       +       +    +  +G+       L G   V NA  AA + 
Sbjct: 252 RVVRFGGEGHASDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQNACGAAAIG 311

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TS 381
           ++ G+    V   L       GR   +        +   Y  +  S+   L  + +  TS
Sbjct: 312 LSYGMSLPDVCHALAGAQAQAGRQALLRMPEGYRLLDDAYNASPESMAASLSVLSSFSTS 371

Query: 382 GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           G  I V G  G+     D G   +   +A    D  I     P+S               
Sbjct: 372 GSRIAVLGDMGELGSASDAGHDSVGRAVAGAKIDALICV--GPKSRRIAHAARAAGMDPA 429

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLV 463
              E  +   A      ++   DV++
Sbjct: 430 RIQEVDDAGAAREALSRIVRADDVVL 455


>gi|322384124|ref|ZP_08057842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151204|gb|EFX44513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 455

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 157/449 (34%), Gaps = 29/449 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             I  VS D+R ++ G +FV + GN  DGH  +             ++A   +       
Sbjct: 16  ISIQGVSIDTRSLRPGNLFVPLPGNHIDGHEHVAA------ALSKEAAAAFWKRGYPNPP 69

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  ++ VD+  K L   + +   +    I+ +TG++GK++    V          +  +
Sbjct: 70  EDAVLIFVDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLV----------ASVL 119

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G T  +     +       P+ L +         V  + +  S  G  +   +  +    
Sbjct: 120 GTTYRVHKTQGNLNNHIGLPLTLLQI---GEDTEVAVIEMGMSGRGEIELLSELAQPDMA 176

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +G  H+    +++    AK  +   L           +      + +       R 
Sbjct: 177 IITMIGDAHLLQLGSREEIARAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRR 236

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +S G +     +  V         +  ++  D +F  PL G   V NAL A      + +
Sbjct: 237 VSFGQKSTNN-IYPVDIQIGNDGSSFRLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEV 295

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               + + L  + +   R E     S    +   Y  +  + + +L  ++ +   R   V
Sbjct: 296 SDEKIAQGLRDVQLSGMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQLKGYRHKYV 355

Query: 388 FGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIE 441
                   G+ ++     +G IA +LA+   ++           I  E     P      
Sbjct: 356 VLADMLELGELEEQFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYW 415

Query: 442 KGNRIEAIRTAIEM-LNKQDVLVV-AGKG 468
             +  +A+  A++  ++ +DV++V A +G
Sbjct: 416 FED-KQAMANALKEVIHPEDVVLVKASRG 443


>gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
 gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
          Length = 428

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 116/362 (32%), Gaps = 32/362 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS+D+R I+   +FVA+ G+  D + F  +A+ +GA+ +V+ ++    D         
Sbjct: 15  SSVSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVIDNSKFYIDERT------ 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+V+++   L   A          I+ +TG++GK++    +  +  +   +   IG  
Sbjct: 69  --LLVEDSLIALQELAKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIGNL 126

Query: 151 STISSFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           +            T    I + +  +    +      +     G                
Sbjct: 127 NNHIGVPLTLLRFTKDTEIGIVEMGANHQKEIEFLCEIAQPDFGY--------------I 172

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++     +     K  L+  +        I ADD                 L+
Sbjct: 173 TNFGKAHLEGFGGVEGVIKGKSELYNYIKNNNKTVFINADDP--------LQKEKSNNLT 224

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                       V          + +   D      L G +   N   A  +     I  
Sbjct: 225 TYSFSTNETEADVTISKVVANPMVQISFNDETINSHLIGIYNANNINAAITIGHYFKISD 284

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
            L+ E +E       R + +   +    I   Y    +S++  + N   +     I + G
Sbjct: 285 KLIKEAIENYIPENNRSQLI-EKNGNKIILDAYNANPSSMQAAITNFIQLEDNSKIAILG 343

Query: 390 CG 391
             
Sbjct: 344 DM 345


>gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
 gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
          Length = 467

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/476 (15%), Positives = 157/476 (32%), Gaps = 42/476 (8%)

Query: 8   YKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI- 64
            +   ++ +          + +  +  V +DSR  Q+  +FV +VG + DGH ++ Q + 
Sbjct: 2   KRTIGQIASMCGGILHGETDAEQMVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVS 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              A A +    +               + V++T + L   A+    +   +++ +TG++
Sbjct: 62  EASAAAFLWQKNHGAPPSENA-------IEVEDTLEALQHLAAAYLRETGVSVVGITGSN 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    V          +  +G T  +     +       P+ +         Q    
Sbjct: 115 GKTTTKDIV----------NALLGTTFKVHKTEGNYNNHIGLPLTVLSM-----PQDTDI 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E    G  + RL                     Q       A+ +L      K    
Sbjct: 160 LILEMGMSGRGEIRLLANIAQPDVAIITNIGESHLLQLGSRAEIARAKLEITSGLKPGGL 219

Query: 245 IIYADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +IY  D      +    +     G ++ + G                +  + I+ +    
Sbjct: 220 LIYNGDEPLLSQVLAESETVKPEGLKLFTFGLATGNDDYPTEITSDGEGSLFITAQSGKE 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  PL G+  V N L A  +     +D+  + + L  L +   R E V   +    +  
Sbjct: 280 AFRLPLLGQHNVVNGLAALAVARHFNVDADHIRKGLSSLKLTGMRIEVVNCPNGLTVLND 339

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
            Y  +  S++  ++ +      GR + V G     G  ++     +G  A       + T
Sbjct: 340 AYNASPASMKAAIQTLSAYKTDGRKVAVLGDMLELGPEEKQFHEEIGIFAAKHDVEVLFT 399

Query: 417 DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                        A+   G+          ++ E I+     L+  D+++V A +G
Sbjct: 400 -----YGALGTSIAQGAQGLMPTANVHAYTDKQELIQHLQVYLHANDIVLVKASRG 450


>gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 516

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 86/490 (17%), Positives = 153/490 (31%), Gaps = 48/490 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L      E++   S+         +   V  DSR + AG +FVA+ G + DGH +  +A
Sbjct: 3   ELSLGTIAEIVGG-SLTSGTDPTALVTGSVEFDSRKVTAGGLFVALNGARVDGHDYAAKA 61

Query: 64  IAQGAEAIVVSSAY-----------------SLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           +A GA   ++S                    + +   +    N     V    + L L A
Sbjct: 62  VADGAVGCLLSRPVMDGMRPVPGVVVPPIPENERKRDSYATENDVDGAVAAVLRALGLIA 121

Query: 107 SRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             +     +    ++ VTG++GK+S    +  I   +G +    G  +            
Sbjct: 122 RHVIDILTQKGLVVVGVTGSAGKTSTKDMMATIFSAAGNTVAPPGSFNNEIGHPYTALKC 181

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T                      + A   G   H         G   N+G  H+    +Q
Sbjct: 182 TAE-------------TQFLISEMSARGIGHIAHLAAIAPPKIGVELNVGTAHVGEFGSQ 228

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            A   AK  L E  LP+   A++ ADD    ++  R         +V             
Sbjct: 229 TAIAQAKGELVEA-LPENGEAVLNADDPLVAQMASRTRARVTSYSAVSTAAAVYATDITF 287

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG--IDSALVLEHLEKLHV 341
             +   +  + +E ++   +  L       +  +AA             +       +  
Sbjct: 288 DHNACARFRLHIEDENVHQITLLVAGEHQVSNALAAAAAAHAAGIDSETIAHSLNRHVGA 347

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVVFGCGGDRDQGK 398
              R   V        I   Y   + S+   L  +      R      V G  G+  +  
Sbjct: 348 SAHRMSLVSCPRNITVIDDAYNANNESMRAGLSALVHTARSRGSSAWAVLGPMGELGRES 407

Query: 399 RPIMGKIALDLADI----AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           + +   I  +L +I     I   +N  S            GI   + + N   A + A  
Sbjct: 408 QTVHAAIGAELKNIGVHGLIAVGENSDSRALATAAE--KTGITTLVARTNLEAAHKLA-P 464

Query: 455 MLNKQDVLVV 464
           +L+  DV++V
Sbjct: 465 LLHADDVVLV 474


>gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 420

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 133/383 (34%), Gaps = 39/383 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             + +DSR +++G IF A+ G+  +G+ F  +A+  GA AIV+       ++     +N+
Sbjct: 12  KGICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLDEIIENLNY-----NNS 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +  V N    L  FA+    K  + I+ +TG++GK++V   +  +  +   +    G  
Sbjct: 67  DVFFVKNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQGYSTHATEGN- 125

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                           P+ L           +  V + A+  G  +   +      G  T
Sbjct: 126 ---------YNNHIGVPLTLLNIRDS---HDIAIVEMGANHIGEIKALCEISLPDYGYIT 173

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G  H++     +     K  L+E L    S + +  +D                 +++
Sbjct: 174 NFGLAHLEGFGGIEGVIKGKSELYEHLDKNNSISFVNPND----------------SIAL 217

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                             +   + V   + + L  L G +Q  N L A  +     ++ +
Sbjct: 218 KNCNSQNIEFTDGVNFFYKSGLLGVSFGNEEILTNLTGSYQENNVLAAITIGRNFELEDS 277

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV---- 386
            + + +        R +   T  +       Y     S+E  L+N   +      V    
Sbjct: 278 KIAKGIANYIPQNNRGQIFKTG-KNTIFLDAYNANPTSMEASLRNAVNLYKKMPHVYIAG 336

Query: 387 VFGCGGDRDQGKRPIMGKIALDL 409
                G+  + +   M +I  +L
Sbjct: 337 GLLELGEYSKSQHQRMIEIFQEL 359


>gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 436

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 148/450 (32%), Gaps = 65/450 (14%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L+ ++  +F  L+          + +KIN    DSR ++ G  F+ + G   DGH +I 
Sbjct: 5   QLKKIVNGEFLNLV----------KNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIE 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA         + ++           ++V +T + L              ++ +T
Sbjct: 55  DAIEKGAVGYFSEKPLNFKNG----------ILVKDTYQALVEVGKH-KRNQVRVVIGIT 103

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GTSGK+S    +          +F +   ++  +   +       P+ LA       S  
Sbjct: 104 GTSGKTSTKELM----------NFVLSNLASTYATQGNYNNEIGVPLTLANI---PESTD 150

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + A   G                  +    I    +       K   FE ++  +
Sbjct: 151 FAIIEMGAGKVG-----------DIDYLGKIVNQDISVLVSVGHGHVEKFGSFENVIKGK 199

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                  + +     +K+ +N    +           +K +  + +     I  +    +
Sbjct: 200 GEIFNCGNYSVLPSELKKFYNPKNPITYGEDGDIE--IKDIKIVKDGTVGIIKYKNDKIE 257

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+       N    AG+   +G D    LE L+       R E +   +    I   
Sbjct: 258 LKIPVYNIGVFKNIGAVAGVLYHLGYDPIKNLEVLKDFKSSSQRGEIIKIGNF-TIIDDS 316

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIV--- 415
           Y     S++  ++ + ++   +I V+      G+  Q     +GK+      D  ++   
Sbjct: 317 YNANPLSVKNAIEILNSMEGFKIFVLGDMLELGEYSQELHREVGKLLNASYIDYIMLYGN 376

Query: 416 --------TDDNPR---SEDPEKIRAEIIH 434
                    DD  R    ++ + I  +I+ 
Sbjct: 377 ETKYVFEEIDDKSRVKHFDNKDDIAEDILK 406


>gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
 gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
          Length = 453

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/396 (17%), Positives = 136/396 (34%), Gaps = 41/396 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + +R  N+V  DSR I  G +FV + G + DGH FI
Sbjct: 1   MKLT---LHEVAQVLGAKNDISL-YPDRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   G    +             +  + P ++V++    L   A+    K    ++AV
Sbjct: 56  PVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G             L  P               
Sbjct: 105 TGSNGKTTTKDMIHDVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKLVLEMGQDHL 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E +   L    L G   +                 +     A        L  
Sbjct: 164 GDIHLLSEIAKPSLSVITLFGEAHLEFF-------GSREEIAKGKLQIADGMEPGSKLLI 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +  I         +++                G+   L+    + +K  +T +V   D 
Sbjct: 217 PAYPIADKLLPSHVDLI--------------RFGEQADLQVTSLVESKDSLTFTVNFMDG 262

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+ G++   NA+VA+ +   +G+ +  +   L  L++   R E+    +    +  
Sbjct: 263 DIFLPVTGKYNATNAMVASYVGKTLGVSNEAIKSALASLNLTRNRTEWKKAANGADILSD 322

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD 393
            Y     ++ +IL+   +I     G+ I V     +
Sbjct: 323 VYNANPTAMRLILETFSSIPANEGGKKIAVLADMKE 358


>gi|298373389|ref|ZP_06983378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274441|gb|EFI15993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 434

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 147/448 (32%), Gaps = 46/448 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R+   ++ DSR      +F A+ G   DG+ F  +A+  GAE  V+            + 
Sbjct: 12  RQFPNITIDSRCCPPESLFFALKGKNNDGNRFAEKALQNGAEYAVIDDP--------DVA 63

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++   +VV +    +   A+    +    I+AVTGT+GK++    +  +  +     +  
Sbjct: 64  ADDRYIVVPDVLTAMQQLAAYHRRQMKARIIAVTGTNGKTTTKELIATVLAKQYKVLYTE 123

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +            T                    + + A+  G      D  +   G
Sbjct: 124 RNHNNHIGVPLTLLRLTEE-------------DQFGVIEMGANHKGEIASLCDIAQPDFG 170

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN GR H++   + +    AK  LF+ L   +    I   ++   E   +        
Sbjct: 171 IITNFGRAHLEGFGSFEGVIEAKTELFDYLREHKGRVFINIGNSNIVE-KAKGIGNISYG 229

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++        ++       +    +             L G + + N L A  + +   +
Sbjct: 230 INNDKADVSGYITGQNPCISVSWASQRFFVVAQSVKTHLVGGYNLENLLAAVVVGLFFEV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   + E L        R +++ T+ R   I   Y    +S+   L+N  ++     +V+
Sbjct: 290 EPNDINEALCGYIPENHRSQYMKTD-RNDLIIDAYNANPSSMAAALRNFNSLPYPHKMVI 348

Query: 388 FGC---GGDRDQGKRPIMGKIA-LDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            G     GD        +  I    L+ D  ++           +I A I  G   F+  
Sbjct: 349 LGDMLEMGDTAVEDHEEIVNIIRNQLSIDEVLL---------VGEIFASIDSGYKTFVTV 399

Query: 443 GNRIEAIRTAIEMLNK--QDVLVVAGKG 468
            +       A    N      +++  KG
Sbjct: 400 DDLS-----AYLEANPPKDTAVLL--KG 420


>gi|309802501|ref|ZP_07696607.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308220901|gb|EFO77207.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 289

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIV--VFGCGGD 393
                VPGR E V     G  +Y+D+AH   S++ ++   +RT    R  +  V G  G 
Sbjct: 121 MCRVQVPGRMERVKAGD-GLLVYIDFAHNYLSVKSLVDEMVRTYGERRPRITLVSGTTGG 179

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI----PGFIEKGNRIEAI 449
           +   +R  + K AL   +  I T D+P  EDP  I  ++   +            R  AI
Sbjct: 180 KAVDRREGIVKGALGRVESFIFTLDDPNYEDPMDIARQMQSYVTDPTARTQIVVPRELAI 239

Query: 450 RTAIEMLNKQ----DVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
             AI    +     ++++V GKG ET +I+         D  ++R +LG
Sbjct: 240 EKAIADAREHADRFNIVLVIGKGDETRNIINGKPVPYEGDGAVVRRVLG 288


>gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanine-ligase murF [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine-ligase murF
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 445

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/475 (15%), Positives = 155/475 (32%), Gaps = 50/475 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++  +  K   +++N             +     DSR  +   +FVA+ G   DGH ++
Sbjct: 1   MRI--MTLKQIAKILNSSLPEVEG----VVKGFCVDSRLTKKNEVFVALRGEHVDGHAYL 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +   +GA A +V   Y    F         +   +N    L + A +   K    ++AV
Sbjct: 55  NEVKQKGALAAIVDQNYQGPVF------GMHLFRTENPLLALQMLAQKCLEKTS-RVVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---SSFAQDNRLTTPSPIYLAKALSYL 177
           TG+ GK++   F++ + ++  +++   G +++         ++   T   + L   ++  
Sbjct: 108 TGSIGKTTTKEFIKTLLEQRYVTAASQGNSNSQVGLPLTVLNHTTGTEDILVLEMGMTEP 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                   + +     + L    + +    +   +  +   E  
Sbjct: 168 GQLSTL------------------VNIAHPEVSVLTTAALVHACRFETLKDIALTKAEIF 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               +   +   +  + E + +         S        HL+ V      +    S+  
Sbjct: 210 SHSHTRLGVVDREIEAYETIAQIGECKKISFSTVSSRADYHLETVNEEVRLKTEGQSISL 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG+  ++N L A  +     +    + + +  L +   R +FV        
Sbjct: 270 GKMC----LPGKHNLHNLLAAIAVARYFELTWNEIKQAIPFLKLPERRLQFVQKEGV-YF 324

Query: 358 IYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
           +   Y  +  S++  L+ +   T  G  I V G     G         +G+ AL+  D  
Sbjct: 325 LNDSYNASELSVKSALETLPNATGKGYKIAVLGSMMELGHFSDECHQRVGEFALNYVDKM 384

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +   I                R E I T  + L   DV+++  KG
Sbjct: 385 YC-----LGAECLPIVEVWKKANRPVELFMERSELISTLKKNLKPADVVLL--KG 432


>gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 465

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 144/397 (36%), Gaps = 31/397 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               + +I  + +DSRH + G  F+A+ G + D H F+ Q  AQG +  +V         
Sbjct: 30  QNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQGCQIAIVERPID---- 85

Query: 83  SATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                S+   L+V +TR  L      R        ++A+TG+SGK++    +  I  R  
Sbjct: 86  -----SDIAQLIVKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTTKEMLGSILSRLA 140

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G  +             P                   + + A+  G   +  + 
Sbjct: 141 PTLITRGNLNNDLGVPMMLLELRPE-------------HQFAVMELGANHQGEIDYTSNL 187

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++       N+G  H+     +     AK  ++  +L  +  AI+ +DD ++  + + A 
Sbjct: 188 VQPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHIL-PDGTAIVPSDDDFTATIRQNAG 246

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N        G     ++  ++       Q  +           P  G   V NA  A   
Sbjct: 247 NHPILSFGEG---GDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAATAF 303

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +AIGI    +++ LE+     GR  F+   +    I   Y     S+    K +     
Sbjct: 304 ALAIGIPLDDIVQGLEQAQGAKGRLNFIQHQNY-LFIDDTYNANPTSMRAAAKVLLQQQG 362

Query: 382 GRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAIV 415
            +++V+   G  GD    +   +G+  ++L  D  +V
Sbjct: 363 LKVMVMGDIGELGDSSWQEHHDLGRDLIELPLDHLVV 399


>gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 452

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 147/394 (37%), Gaps = 29/394 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  V+ +S  ++   +FV IV    DGH FIP AIA GA+AI+VS    L     
Sbjct: 18  GEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSAIANGAKAILVSKKQGL----- 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P +V  NT K L   A          I+++TG+ GK+SV   +  +        
Sbjct: 72  ----DIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKTSVKEMIVTLLGERK-VH 126

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +          L TP  +  A   +  +  G    + +             I+ 
Sbjct: 127 FTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAADI------------IQP 173

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H++  +T       K  L + L       +    D        +     
Sbjct: 174 NIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIV--NLDDERIPNYAKLLECK 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               S+      I +    A  N     I +  +++D+  P  G+  ++N+++A    +A
Sbjct: 232 KISCSMTNPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAIASVVA 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G++    L++ + +    GRF     + +   I   Y  ++ +++  ++++      +I
Sbjct: 292 VGLEPKDFLQNTQNIKNYKGRFSTEKLSDKLTLIDDTYNASAGAVQAAIEDLAEFDGKKI 351

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALD-LADIAIV 415
           + +      GD  +     MG+       D   +
Sbjct: 352 LAISSMRELGDEAENYHRKMGQWLKKANLDKIFL 385


>gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK405]
          Length = 456

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 158/484 (32%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSEHPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKEGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+ G++   NA++AA   +  G+  A + +   KL +   R E+    +    +
Sbjct: 262 DQRIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSKLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EELTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
          Length = 455

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 150/480 (31%), Gaps = 51/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH +I
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  I         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +++       ++ +         +            + ++     
Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413
            Y     + + +L +   +     GR I V G   +       +   +A      L D  
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +           K   E + G        + EK +    I    E +   D++++  KG
Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441


>gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 436

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 72/450 (16%), Positives = 141/450 (31%), Gaps = 65/450 (14%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L+ ++  +F  L             +KIN    DSR ++ G  F+ + G   DGH +I 
Sbjct: 5   QLKKIVNGEFLNLK----------ENKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIE 54

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
            AI +GA         + ++           ++V +T + L         +    ++ +T
Sbjct: 55  DAIEKGAVGYFSEKPLNFKNG----------ILVKDTYQALVEVGKHKRNQVKA-VIGIT 103

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GTSGK+S    +  +      +    G                P  I L           
Sbjct: 104 GTSGKTSTKELMNFVLSNLASTYATQGN-YNNEIGVPLTLANIPENIDL----------- 151

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            T + + A   G   +    +        ++G  H+    + +                +
Sbjct: 152 -TIIEMGAGKVGDIDYLGKMVNQDISVLVSVGHGHVGKFGSFENV-------------IK 197

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
               I+    YS    +       +      +   I ++ +  + +     I  +    +
Sbjct: 198 GKGEIFNCGDYSVLPSELKKFYNPKNPITYGEDGDIEIRDIKIVKDGTVGVIKYKNDKIE 257

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+       N    AG+    G D    LE L+      GR E +   +    I   
Sbjct: 258 LKIPVYNIGVFKNIGAVAGVLYHFGYDPIKNLEVLKDFKSSSGRGEIINIGNF-TIIDDS 316

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL-DLADIAIV--- 415
           Y     S++  +  + ++   +I V+      GD  Q     +GK       D  ++   
Sbjct: 317 YNANPLSVKNAIDILNSMEGFKIFVLGDMLELGDYSQELHREIGKFLNVSYIDYIMLYGN 376

Query: 416 --------TDDNPR---SEDPEKIRAEIIH 434
                    DD  R    ++ + I  +I+ 
Sbjct: 377 ETKYVFEEIDDKSRVKHFDNKDGIVEDILK 406


>gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 466

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 81/483 (16%), Positives = 154/483 (31%), Gaps = 55/483 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L   +  ++        +   +  +  V +DSR+I+ G  FV ++GNK DGHLF+
Sbjct: 1   MVLRLL---NLNDIWGPPYQNKLVNLDAPLGTVCTDSRNIKKGNFFVPLIGNKFDGHLFL 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +   +G +A  +S   +L      I        VD+T++     A          ++AV
Sbjct: 58  EEVFEKGVQAAFISKDCNL-----AIPEELLYWQVDDTQEAYQKLAFLHRRLFSIPVVAV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +               P   + + + +N      P  L       ++ 
Sbjct: 113 TGSAGKTTTRELIHSSLV----------PLGEVLATSNNNNNDIGVPFTL-----LKANV 157

Query: 181 GVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             + + +E +  GL Q  RL        +               +    +        + 
Sbjct: 158 NHSAIVLEMAMRGLGQIERLSKCACPDIAVITNIGSSHIGLLGSKQNIASAKCEIAAHMN 217

Query: 240 KESPAIIYADDA---------YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                II A D          +   +++    +                K V  +     
Sbjct: 218 PNGFVIIPAGDQLLEKTLQEVWKGRIVRVDIESKSNPFFANEYDSHQTKKNVDYLGVLDS 277

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +      F  PL G     N + A  +   + +    +      L           
Sbjct: 278 DNWQITYDGIIFQMPLQGRHNAINFMFALAVAYELNVPLDSIRNLSVNLPPG-----RNH 332

Query: 351 TNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPIMGK- 404
           + + G    +D  Y  +  S+   L  + T   GR   V G     G++       + + 
Sbjct: 333 SLTFGNINVLDETYNASPESVIASLDLLAT-KPGRHFAVLGNMYELGEKTIDYHEQIVQH 391

Query: 405 -IALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDV 461
            IA  L  + I  +  P +E      A ++ G  +          +A       LN  D 
Sbjct: 392 SIATGLTGLVICVN-GPEAE------AMLLAGQPLSYIEVVSTPEDAFLILKSWLNSGDY 444

Query: 462 LVV 464
           L++
Sbjct: 445 LLL 447


>gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
 gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
          Length = 457

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 158/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIKTAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L+  D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
 gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
          Length = 452

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 159/479 (33%), Gaps = 53/479 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL     ++   ++   +   + + +  IN +  DSR I+ G +F+ + G + DGH FI
Sbjct: 1   MKLT---LQEIASVVGAQNDVSL-FEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A A GA A               I S+ P ++V +  K     A     K   +++AV
Sbjct: 56  DTAFANGAVATFSEK---------NITSDYPYILVVDCLKAFQDLAQYYLEKMRVDVIAV 106

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  I   +  +    G                  P  +          
Sbjct: 107 TGSNGKTTTKDMIATILATTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEKI 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +           L  +            T +G  H+++  +++    A+ ++       
Sbjct: 157 VLEMGQDHLGDIALLSNLT---HPHIAVVTLIGEAHLEFFGSREKI--AQGKMQITQGMD 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G    +       +K  +       D 
Sbjct: 212 GHGILIAPADKIISSFLPEKQKVI-------RFGADEDIFVTELEEHKNYLNFKTNFLDN 264

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +   P+ G++   NA++A+ +   + +    ++  L +L++   R E+    +    +  
Sbjct: 265 EIKLPVTGKYNATNAMIASYVGKLLNVSEEKIISALAQLNLTRNRTEWKKAANGADILSD 324

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     ++++IL+   +I     G+ I V     +    +  +   +   L D A++  
Sbjct: 325 VYNANPTAMKLILETFSSIPANNGGKKIAVLADMKELGDSELALHAAMIASL-DPAVIDR 383

Query: 418 DNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   + +  E+                +     E I+  +      D +++  KG
Sbjct: 384 IFLFGPLMQALADEVAQVYSVGKWYYFAQADQVDELTEQIQKVL---GPNDQILL--KG 437


>gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 457

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 159/482 (32%), Gaps = 48/482 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +    +  +++  +       R+      +S DSR +    +F+AI G   DGH F+P+ 
Sbjct: 2   EFFLSELNDVLGNIRNLRESKRDFLSFKNISIDSRTLLKNDLFIAIKGKNFDGHSFLPEV 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + +G +++V+      +     + SN P  VV++T +     A     K    I+A+TG+
Sbjct: 62  LNKGVKSVVI-----KKGMQRLLPSNFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    +  +  + G         +           T                    
Sbjct: 117 VGKTTTKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATDIE---------------DK 161

Query: 184 HVSVEASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            + +E    GL Q  +     +      TN+G  HI    +++   +A      + L  E
Sbjct: 162 VLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITHA-KCEISKFLNPE 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKD 299
              II A+D + ++ +K +       + +        +                ++  ++
Sbjct: 221 GVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEE 280

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   L G     N L A  +   +GID A    +        GR + + +        
Sbjct: 281 NTFEISLEGFHNASNFLFAYAVSKELGIDFASF--NKFDFVSFGGRNKILKSLKTTIYDE 338

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             Y  +  S++  +KN+      +   +FG            +GK +           +N
Sbjct: 339 -SYNASPESVKACIKNLLEKPRNKF-FIFGSMQ--------ELGKESEKYHKEIFNLINN 388

Query: 420 PRSEDPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
              E    I  +         +     F+   N  +  +   +   K D +++  KG   
Sbjct: 389 SDIEKCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVPQEINKSTKKGDSILI--KGSRC 446

Query: 472 VH 473
             
Sbjct: 447 WQ 448


>gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
          Length = 417

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 16/157 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+    I              SDSR ++ G +FVAI G + DGH F+
Sbjct: 10  MGLAEIEQAVHGRLVAAEGIASNGAMA---TSACSDSRQVREGSVFVAIAGERVDGHDFV 66

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPE 115
            +  AQGA A +V    +         +  P +VVD+T + L   A     +      P 
Sbjct: 67  SKVGAQGAVAALVDHEVA--------DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            ++ +TG+ GK++    +  +    G +   +G  + 
Sbjct: 119 TVIGITGSVGKTTTKDLMASLLSAMGETVAPVGSFNN 155


>gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 460

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 139/412 (33%), Gaps = 37/412 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L  L      ELI           +  I+ VS+D+R+I +  +F+A+ G + D H F  
Sbjct: 5   QLSQLASVLNAELIG---------ADTSISAVSTDTRNIPSETLFIALKGERFDAHDFCQ 55

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENI 117
            A   GA+A++VS           +  + P LVV +TR  L    +     +  KH    
Sbjct: 56  TAKDNGAKALLVSK---------RLPVDLPQLVVTDTRIALGQMGAWLKVEMTQKHGLKT 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TG+ GK++V      I    G      G  +            TP            
Sbjct: 107 LALTGSCGKTTVKEISAAILATKGNVLATAGNFNNDIGAPLTLLRLTPE----------- 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + A+      +  + +K       NL   H++   + +    AK  +FE L
Sbjct: 156 --YQYAVIELGANHQQEISYTTNLVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGL 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +    +         A +      +      +   +           T+    
Sbjct: 214 SDGGIAIVNLDSNDLPLWQPLLAQHQVLTFSATASDADYHAERININAQGLACFTMCTPI 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D    L G   V NAL AA L I++G   A V   LE +  V GR +     +    
Sbjct: 274 GKVDVNLTLAGMHNVANALAAAALTISLGATLAEVKAGLETMANVKGRLDITEPRAGLRL 333

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407
           I   Y  +  +++  +  +      R  ++      GD        +G+ A 
Sbjct: 334 IDDTYNASVAAVKAAIDVLANFQGQRYFILGDMAELGDESDNLHREVGEYAQ 385


>gi|94991839|ref|YP_599938.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545347|gb|ABF35394.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 121

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEIIH 434
           +    +G+++++ G  G++ + +R   G++     ++  I+T D+P  EDPE I  EI  
Sbjct: 1   MEEHQTGKLMLILGAPGNKGESRRADFGRVIHQHPNLTVILTADDPNFEDPEDISKEIAS 60

Query: 435 GIPG-FIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
            I        +R +AI+ A+ +    +D +++AGKG +   IV   +   + D  I +  
Sbjct: 61  HIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKGADAYQIVKGQQVAYAGDLAIAKHY 120

Query: 493 L 493
           L
Sbjct: 121 L 121


>gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
 gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
          Length = 457

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 75/485 (15%), Positives = 154/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIYEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKELA----------NHPYILVDDVLTAFQTLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTIYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSDIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  ++   D   +  +                G+   L+    +  K  +T      
Sbjct: 209 MSSNSLLLAPADPIVESYLPADKKVV-------RFGQGAELEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQDLELTRNRTEWKKAANGADVL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVID 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|300776807|ref|ZP_07086665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300502317|gb|EFK33457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 423

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 142/437 (32%), Gaps = 46/437 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR I    IF A  G   +      +AI  GA A++V               +  I
Sbjct: 16  VTIDSRKIAENDIFFAFSGENFNAATLAEKAIDDGALAVIVE-------LPEFENRDKNI 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V +T +FL   A     K     + +TG++GK++    +  +        +  G  + 
Sbjct: 69  FYVPSTLEFLQQLAIYHRRKLSIPFIGLTGSNGKTTTKELIHAVLSEKFNVQYTSGNLNN 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P                +  + + A+     +      +   G  TN 
Sbjct: 129 HIGVPLTILSIKPE-------------HEMAVIEMGANHQKEIEFLCTISQPDFGYITNF 175

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L++ L       ++  +D      +++  N   ++     
Sbjct: 176 GKAHLEGFGGFEGVIKGKSELYDYLKNNNRTIVVNENDPIQ---LEKTENYPSKITFGKE 232

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                           ++  + +  +    +  L GE+   N   AA L +  GI    +
Sbjct: 233 TS------NYNFESFSEEHFVGLIYQGVKAVSKLTGEYNFTNLCAAASLGLHFGIGFEKI 286

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV--FG 389
              LE       R + V     G  + +D Y    +S+   L N  +    + I++    
Sbjct: 287 KHALELYTPTNMRSQVVKKE--GRTLVLDTYNANPSSMTASLNNFISFEGSKTIIIGDML 344

Query: 390 CGGDRDQGKRPIMGKIALD-LADIAI--------VTDDNPRSEDPEKIRAEIIHG---IP 437
             GD  + +   + K+A D   D  I        V   +   E+  ++   +        
Sbjct: 345 ELGDESEKEHQNILKLAQDLHFDEIITVGKHFKAVNSSDLAFENTTELAEYLKQHKIQTE 404

Query: 438 GFIEKGNRIEAIRTAIE 454
             + KG+R  A+   I+
Sbjct: 405 NILLKGSRGIALEKIID 421


>gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
 gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
          Length = 447

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 157/448 (35%), Gaps = 48/448 (10%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  V  DSR + AG +FV + G + DGH FI QAIA GA A   S              +
Sbjct: 21  VTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIASGAIATFWS--------VQDQPED 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             ++ V +  + +   A+         ++A+TG++GK++       +  ++  +    G 
Sbjct: 72  ITVIQVTDCLEAMQKLATYYRELLAPKVVAITGSNGKTTTKDLTASVLSQAFRTYKTQGN 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N +  P        L       V  + +     G         +    + 
Sbjct: 132 --------YNNEIGLP-----YTILHMPKDTKVVVLEMGMDHAGDLTTLSTIARPDIAAI 178

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVL 268
           T +G  HI+   ++     AK+   +  +     A         + ++         +V+
Sbjct: 179 TMIGEAHIENLGSR-----AKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQGMTQQVV 233

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G     +    +     +   ++    K+ D+  PL G + V NAL+A  +    G+ 
Sbjct: 234 TFGIDAGDVAAHILEEHAEQTVFSV----KEQDYRIPLLGTYNVKNALIAYSIGEKFGVT 289

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
              +   L+ + V   R +++   +    +   Y     ++ ++L +   +   GR   V
Sbjct: 290 PEQIANGLKNVQVTKNRTQWLEMENGTRLLSDVYNANPTAMGLVLDSFGKLPVQGRRFAV 349

Query: 388 FGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIE 441
                  G         M     +  D   +       E  + +  E+      +P  + 
Sbjct: 350 LADMLELGPESSVMHAAMADHVQNY-DGLFLV-----GEQMDYLAKELAARDSDVPLELY 403

Query: 442 KGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
             N + A I    ++L   D+L++  KG
Sbjct: 404 DANELAALIEDLKQLLQPADMLLL--KG 429


>gi|300741261|ref|ZP_07071282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|311113336|ref|YP_003984558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380446|gb|EFJ77008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|310944830|gb|ADP41124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 535

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 137/480 (28%), Gaps = 44/480 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK----INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +I     E+I      P+    R+        ++DSR +  G +FVA  G   DGH F+ 
Sbjct: 1   MIKLSAAEIITATGGSPLGLAGRESELGATFATTDSREVIPGTLFVAKPGEVTDGHNFVS 60

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NI 117
            A  +GA   +V      +          P + VD+    +   A     K        +
Sbjct: 61  GAFDKGAVLALVERPVKDERGILY-----PSIQVDDVVLAMGKIAQYAVEKMRSLGDLTV 115

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++    +  I    G +   +G  +               P+ + +A    
Sbjct: 116 IGITGSAGKTTTKDLLAAILSSQGETIAPVGSYNGE----------VGVPLTVFRADEST 165

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +   +    +     + +     +                  +             
Sbjct: 166 RYLVIEMGADHVGNIEYLANIVHPDHGVILKVGTAHAGEFGGVDNIERTKGELAEG---- 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI----HNKQQVTI 293
           +      I+ ADD     +  RA                 +   +          +    
Sbjct: 222 IRTGGTLILNADDERVARMSARASAPVTYFGVGEKPQYERYTAALGLHTNDAGCPEFTLR 281

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTN 352
             +  +++    L GE  V N L AA +    G+    +   L         R       
Sbjct: 282 LPDASEYEISSKLIGEHHVCNILAAATVAYNAGVPGDAIAHALNNTGALSKWRMARTDRA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG----RIIVVFGCG---GDRDQGKRPIMGKI 405
                I   Y     S+   L+ +  +  G    R   V G     G+    +   +G++
Sbjct: 342 DGVTVINDAYNANPESMTAALRTLAQLGRGAKPRRTWAVLGAMLELGEASLEEHDRLGRL 401

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            + +    ++   N   E      A  + G             EA+      L   D+++
Sbjct: 402 VVRMNISKLIAVGN---EAKPAYNAAHLEGSWGNEATWVETPQEALNILRAELRSGDIVL 458


>gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
 gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
          Length = 426

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 82/488 (16%), Positives = 179/488 (36%), Gaps = 73/488 (14%)

Query: 1   MK-LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK L  L+ + F   +++L          +I +V  DSR I+   +F AI     +G+ +
Sbjct: 1   MKILTKLLKEKFK--LDKLD---------EILKVVMDSRKIEKDSLFFAI----NNGNKY 45

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I + + +GA  ++                ++ ++VV++T K +   A          ++A
Sbjct: 46  IDEVLERGATLVIADD---------YSGDDSRVIVVEDTIKAMQDLAQEYRKALGVKVIA 96

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    +  +  +        G          +N +  P  I           
Sbjct: 97  ITGSNGKTTTKDMIYSVLSQKYRCKKTEGN--------YNNHIGLPFTILQLDDTDE--- 145

Query: 180 QGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             V+ + +  S  G +  RL  I K      TN+G  H+++ +T++  F AK  + + ++
Sbjct: 146 --VSVLEMGMSGFG-EIDRLCEIAKPDYALITNIGDSHLEFLKTRENVFKAKGEIIKYVV 202

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +         D Y  + +        +      +      + +          I++ GK
Sbjct: 203 SENLIIF---GDDYYLKNLSGITVGYEKNCKKRIENFKDTDEGIEFSLEGNNYKINLNGK 259

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                          N  +A  + +++ + S  + +  + L++ P RF+ +        I
Sbjct: 260 -----------HNCINGAMAVVVGMSLDLTSEEIQKGFDNLNLTPMRFQKI-VKGETLYI 307

Query: 359 YVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCG---GDRDQG-KRPIMGKIALDLADIA 413
              Y  +  S+   L+    + + R  I V G     GD++    R I+ K      D  
Sbjct: 308 NDAYNASPISMRYSLETFDKLYNDRTKIAVLGDMLELGDKEIEFHREIIKKALDIKVDRI 367

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN---RIEAIRTAIEMLNKQDVLVVAG-KGH 469
            +        +  +   E++      I   +     E+I+ +I+       +++ G +G 
Sbjct: 368 YI------YGERMQKAYELMKQNKKIITSLDKNFIRESIKESIKGSKA---ILLKGSRGM 418

Query: 470 ETVHIVTN 477
           +   I+  
Sbjct: 419 KMEEIIEG 426


>gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
 gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 471

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 135/393 (34%), Gaps = 31/393 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKE-DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           V  +S+ IQ G +F+A+      DGH F+  A+A+GA+A++VS             +N  
Sbjct: 29  VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALARGADAVIVSKLIDN-------NANDK 81

Query: 92  ILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           I++V+NT   LS  A+    +      + +TG+ GK+S    + ++      +       
Sbjct: 82  IILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKVFSTYYKTFASRKNF 141

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +                     S   +       +  SS G  Q  +  + L     T
Sbjct: 142 NNLLGMLL-------------NLASVPINTEYAIFELSTSSPGGLQKLVKILPLNIAVLT 188

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRAHNAGCRV 267
           N+   H ++  + +    AK  +F  L+ K    I           + + K   N     
Sbjct: 189 NINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFYTKQLEYINKLGINNVFTF 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +       I      A + K  + IS  G D+ F   + G  Q +N      +     I
Sbjct: 249 GTHQEANSNITNYYYDADNQKSVINISCNGYDWQFNTQILGYGQAFNIAAVMLVSNICKI 308

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMILKNIRTITSGRI 384
           +   V E +  L    GR +    N        +D  Y     S++  L  +  I + R 
Sbjct: 309 NLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDLLGQIKAKRK 368

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
           + + G     G+  +     +           I
Sbjct: 369 VAILGDMLELGNNTKEHHLNLVTYIKKYNIHVI 401


>gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 328

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            F EL+  L    +   +   + VS+DSR I+ G +FVA+ G + DGH ++ Q  A+GA 
Sbjct: 2   TFSELVVPLDALLVGG-DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAV 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSS 128
             +V                 P LVV +TRK L+   +          + AVTG+SGK++
Sbjct: 61  GALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTT 112

Query: 129 VASFVQQICQRSGLSSFQIGPTST 152
           V   +  I +  G      G  + 
Sbjct: 113 VKEMLASILRTRGPVLATRGNLNN 136


>gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
 gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
          Length = 468

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 140/411 (34%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                       + VS+DSR    G +FVA+ G + D H F+    A+GA A +V+   +
Sbjct: 15  GATVHGDAGVTFDRVSTDSRTAGPGDLFVALKGERFDAHDFLGDVAARGASAALVAHVPA 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A             TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 75  GVTMPAIEGGE--------TRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++     +++           P+ L +  +      +  + +          R
Sbjct: 127 AAVGADARLATAGNLNNDV-------GLPLTLLRLSAAHRLAVIE-IGMNHPGETEILAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L           N  R+H ++  T +A            LP +  A+  ADDAY+     
Sbjct: 179 LTA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALPPDGVAVFPADDAYAGIWRV 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++   G+    + V    +  ++ I              GE    NAL A
Sbjct: 236 AATGNRILDFALHDAGRQNDAQ-VTGRLHGGELAIDTPAGVVTVRLRALGEHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILK 374
               +  G+  + + + LE    V GR +     +    G  +  D Y    +S+   + 
Sbjct: 295 TAAALGAGVALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 355 VLAAQPAPRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRD 405


>gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis]
          Length = 446

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 151/481 (31%), Gaps = 73/481 (15%)

Query: 9   KDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +  E++              +      DSR  + G +FVA  G   DGH +  +A   G
Sbjct: 7   GEIAEIVGG----KATGESVTVTAPAVLDSRQAEPGGLFVAFAGEHADGHDYAERAGRAG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSG 125
           A A++ S             ++ P +VV++ R  L   A+ +  +  +   ++ VTG+ G
Sbjct: 63  AVAVLGSR-----------PTSLPTVVVEDVRTALQTLAAHVVARLRDGLTVVGVTGSQG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+     +  +   +G +    G          +N L  P        L   ++     +
Sbjct: 112 KTGTKDLLAAVLSGAGPTVATTGSL--------NNELGVP-----LTMLRAQAATRFLVL 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A   G        +        N+G  H+    ++ A   AK  L + L+P  +  +
Sbjct: 159 EMGARHEGDIAELTGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVL 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D      M    +                L  V     +   T+           P
Sbjct: 219 --NADDPRVASMSVLTDGPVLTFGRTDPADVQVLDVVLDRLGRPSCTLRTVDTSARLALP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G  Q  NA  AA   +A G+   L    L    + P R E          +   Y   
Sbjct: 277 LVGAHQALNASAAAAAALAAGVPLDLATTALTTASLSPWRMELRDLACGATLLNDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRP--------------IMGKIALD 408
            +S    L  +  I  GR I V G     GD  + +                 +G+ A  
Sbjct: 337 PDSTRAALDALSAIEGGRRIAVLGEMLELGDGSEAEHRAVGAYAAARADVVVAVGEAARP 396

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGK 467
           LAD                       G    +  GN   A+    + L   DV++V A +
Sbjct: 397 LAD---------------------GAGERAVVLAGN-DAAVDWLRDHLAAGDVVLVKASR 434

Query: 468 G 468
           G
Sbjct: 435 G 435


>gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
 gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54]
 gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
          Length = 457

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 157/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQDLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L+  D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
 gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
          Length = 457

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 154/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D   ++ +                G+   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADPIVEDYLPIDKKVV-------RFGQGAELEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|282878040|ref|ZP_06286848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
 gi|281299875|gb|EFA92236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
          Length = 446

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 125/400 (31%), Gaps = 38/400 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR      +F A+ G   +G+ F   A+ +G    V+            I+ +   
Sbjct: 16  VTTDSRDCPKDSMFFALKGTSFNGNEFAQSALEKGCAYAVIDQK------EYQIQEDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++  + L   A+         I+ +TGT+GK++    +  +        +  G  + 
Sbjct: 70  ILVEDCLQTLKQLANYHRRTLGTPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                +  V + AS  G  Q  +   +      TN+
Sbjct: 130 EIGVPKTLLCLKPE-------------HEMAVVEMGASHPGDIQSLVTVAEPDYALITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ +   +   +++ +   ++ + +        V ++GY
Sbjct: 177 GRAHLQGFGSFEGVMRTKAELYDYMQQHKPQGLVFINQD-NEYLKEMFRTHCPNVKAMGY 235

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-------------NALVAA 319
                    +          +    +          + + +             N L A 
Sbjct: 236 AQTDRPDISIRGEVVSCAPYLKFRWRKTAAAPSPREDTRWHEVQTQLIGAYNLDNMLAAI 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +    G+    +   L        R +   T      I   Y     S+E  L N + +
Sbjct: 296 TIGSHFGVSDEQINHALAGYVPSNNRSQLQITA-HNKLIVDAYNANPTSMEAALTNFQRM 354

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIV 415
              + + + G   +          KI   +A    D   +
Sbjct: 355 DVPKKMAILGDMRELGDVSMAEHQKIVDLIATLNLDKVWL 394


>gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 458

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 160/460 (34%), Gaps = 42/460 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E+ +++    +   +     VS+D+R +Q G +FVA+ G   DGH F+       A  
Sbjct: 6   LAEIASKVGG-ELHGGDTVAEGVSTDTRSLQHGQLFVALTGPTYDGHAFVSD--DLPAAG 62

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS           + +  P ++VD+TR  L   A       P  +LA+TG++GK++V 
Sbjct: 63  VMVSR---------LLPTRLPQVLVDDTRLALGRLARAWRESLPVTVLALTGSNGKTTVK 113

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I +    +    G  +               P+ L +            V + A+
Sbjct: 114 EMLSAIAREHAPTLATRGNLN----------NDIGVPLTLLEMARNHR---YAVVEMGAN 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            HG   +     +      TN G  H++   + +    AK  ++   L  +  A+I ADD
Sbjct: 161 HHGEIAYLTSLARPDVALITNAGPAHLEGFGSIEGVSRAKGEIYSG-LGPDGVAVINADD 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                +             V   G     +          + + + G+        PG  
Sbjct: 220 -----IYADYWYGLNPGRRVISFGLDHVAEVSGEWQAPGSLRLHMNGRVHALELAFPGRH 274

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL AA   +   I    +L  L ++H V GR   V        +   Y     S  
Sbjct: 275 NALNALAAAAAALGAEIPEEAILRGLARVHPVSGRLVAVPGRGGALLLDDSYNANPASTR 334

Query: 371 MILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             L+ +      R +V+   G  GD  +     +G  A +L        ++  +  P   
Sbjct: 335 AALEVLSGHGGERCMVLGDMGELGDEGETLHAEIGARARELG------IEHFHAVGPLS- 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +     G     ++   I     ML+    ++V  KG
Sbjct: 388 AHAVRAFGEGAQHHPDQAALIEALRPMLHAGMTVLV--KG 425


>gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 461

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 141/428 (32%), Gaps = 48/428 (11%)

Query: 1   MKLQDLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +          +  +N++  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKL------TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A     A           S  P ++V+N        A     K   +++
Sbjct: 54  FIDLAFENGAVATFSERAI----------SGRPYILVENCLAAFQKLAQYYIDKLRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK+S    ++ +  ++  +    G                  P  +        
Sbjct: 104 AVTGSNGKTSTKDMIEAVLAKAYKTYKTQGN----------YNNDIGLPYTVLHMPEDTE 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +           L   R+   +      T +G  H+ Y  +++    A+ ++     
Sbjct: 154 KIVLEMGQDHMGDIQL-LSRIA--RPHIALLTLIGEAHLAYFGSREKI--AEGKMQIVDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  +I   D      +  +             G    L        K  +T      
Sbjct: 209 MDSNGILIAPGDPILDPYLPDSQMVI-------RFGDHQELVVEDIKECKDSLTFRTNVL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G++   NA++AA +   + +    ++E LE + +   R E+V   +    +
Sbjct: 262 PRPVTLPLTGKYNATNAMIAAYVGKLLAVPDEDIIEALETVKLTRHRTEWVKAANGADLL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLAD 411
              Y     ++ +IL+    I    +G+ I V     +       +  ++         D
Sbjct: 322 ADVYNANPTAMRLILETFAAIPANPNGKKIAVLADMKELGADSVALHSQLITSLDPKRID 381

Query: 412 IAIVTDDN 419
             +   D+
Sbjct: 382 QLVFYGDD 389


>gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
 gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
          Length = 476

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 135/427 (31%), Gaps = 35/427 (8%)

Query: 6   LIYKDFPELI----NQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +I     E+       +   P       +   V +DSR  + G ++VA +G   DGH F+
Sbjct: 1   MIALSLAEIAVATGGTVHGAPTSGELPVVTGAVVTDSREAEPGSLYVARIGESMDGHQFV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A  +GA A + S                P +VVD+ +      +  +  +     L V
Sbjct: 61  GAARDKGAVAALTSRPVDE----------LPCVVVDDVQAAFVAISRAVLER--ATDLTV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            G +G S   S    +    G ++  I P  + +S        T             +  
Sbjct: 109 IGITGSSGKTSTKDLLGGVLGAAAPTIAPVGSYNSEVGVPLTVT----------RVTADT 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V + A   G   +         G   N+G  H+    +++A   AK  L E  LP 
Sbjct: 159 RFLVVEMGARGIGHINYLTRIAPPQIGVVLNVGTAHVGEFGSREAIARAKAELVEA-LPS 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++ ADD   + +  R       V              V +   +    ++      
Sbjct: 218 DGVAVLNADDPVVRAMADRTSARVVLVGEAAEAAVRAEDVTVGSDG-RATFRVTTPAGGA 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIY 359
                L G   V NAL    + +  GI        + +   V   R E          + 
Sbjct: 277 TIALRLVGRHHVGNALAVLAVALECGIPLDTATTSIAEAGIVSRWRMEVTERPDGVTVVN 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIA-LDLADIAI 414
             Y    +S+   L  + ++  GR    V G     GD        +G  A     D  +
Sbjct: 337 DAYNANPDSMRAALSALESMGEGRRTWAVLGSMLELGDESDTDHAEVGAEAQQRGVDELL 396

Query: 415 VTDDNPR 421
           V  +  R
Sbjct: 397 VVGETAR 403


>gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14]
          Length = 453

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 175/483 (36%), Gaps = 60/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + +   N+V  DSR +  G +FV + G + DGH FI
Sbjct: 1   MKLT---LHEVAQVLGAKNDISL-YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   G    +             +  + P ++V++    L   A+    K    ++AV
Sbjct: 56  PVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G             L  P               
Sbjct: 105 TGSNGKTTTKDMIHDVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKLVLEMGQDHL 163

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E +   L    L G              H+++  +++    AK +L      +
Sbjct: 164 GDIHLLSEIAKPSLSVITLFG------------EAHLEFFGSREEI--AKGKLQIADGME 209

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++   D  + +++          + +   G+   L+    + +K  +T +V   D 
Sbjct: 210 PGSKLLIPADPIADKLL-------PSHVDLIRFGEQADLQVTSLVESKDSLTFTVNFMDG 262

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+ G++   NA+VA+ +   +G+    +   L  L++   R E+    +    +  
Sbjct: 263 DIFLPVTGKYNATNAMVASYVGKTLGVPDEAIKSALASLNLTRNRTEWKKAANGADILSD 322

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+   +I     G+ I V     +       +  ++ L L+    D  
Sbjct: 323 VYNANPTAMRLILETFTSIPANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTV 382

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--------IRTAIEMLNKQDVLVVA 465
           I    +   E   ++ +++   I        R  A        ++   E L K+D ++  
Sbjct: 383 IFYGQDI--EGLAQLASQMFP-IGKVYFF--RKNAEQDQFEDLVKQVRESLGKEDQILF- 436

Query: 466 GKG 468
            KG
Sbjct: 437 -KG 438


>gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
 gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
          Length = 457

 Score =  107 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 175/483 (36%), Gaps = 60/483 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  +++   +   + + +   N+V  DSR +  G +FV + G + DGH FI
Sbjct: 5   MKLT---LHEVAQVLGAKNDISL-YTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A   G    +             +  + P ++V++    L   A+    K    ++AV
Sbjct: 60  PVAFENGCVVTLSE-----------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAV 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +   +  +    G             L  P               
Sbjct: 109 TGSNGKTTTKDMIHDVLATTYKTYKTQGN-YNNEIGLPYTVLHMPDDTEKLVLEMGQDHL 167

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           G  H+  E +   L    L G              H+++  +++    AK +L      +
Sbjct: 168 GDIHLLSEIAKPSLSVITLFG------------EAHLEFFGSREEI--AKGKLQIADGME 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               ++   D  + +++          + +   G+   L+    + +K  +T +V   D 
Sbjct: 214 PGSKLLIPADPIADKLL-------PSHVDLIRFGEQADLQVTSLVESKDSLTFTVNFMDG 266

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+ G++   NA+VA+ +   +G+    +   L  L++   R E+    +    +  
Sbjct: 267 DIFLPVTGKYNATNAMVASYVGKTLGVPDEAIKSALASLNLTRNRTEWKKAANGADILSD 326

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+   +I     G+ I V     +       +  ++ L L+    D  
Sbjct: 327 VYNANPTAMRLILETFTSIPANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTV 386

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--------IRTAIEMLNKQDVLVVA 465
           I    +   E   ++ +++   I        R  A        ++   E L K+D ++  
Sbjct: 387 IFYGQDI--EGLAQLASQMFP-IGKVYFF--RKNAEQDQFEDLVKQVRESLGKEDQILF- 440

Query: 466 GKG 468
            KG
Sbjct: 441 -KG 442


>gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 456

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 156/481 (32%), Gaps = 55/481 (11%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    ++    DSR +++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFANVSLSNAEFDSRLVKSGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSERPVA----------GGAYILVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +I   D    E +                G    +        K  ++      
Sbjct: 209 LKKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFDCNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGANSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEIIHGIPGFIEK----GNRIEAIRTAI-EMLNKQDVLVVAGK 467
           T      +D E +     EI      +        ++ E +  A+ E L   D +++  K
Sbjct: 381 THLFLYGQDMEALYDYAKEIYPPGKVYYFIKNDEKDQFEQLTKAVRENLTPADQILL--K 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 473

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 154/475 (32%), Gaps = 45/475 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +    +   V  DSR +  G +F A  G + DGH +   
Sbjct: 1   MITLSLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         A      P +VV++    L   A  +  +    ++ +TG
Sbjct: 60  ----------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G          +N +  P         +  ++   
Sbjct: 110 SAGKTSTKDLIAQLLQRKGPTVWTPGSL--------NNEIGLP-------VTALTATAAT 154

Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            H+ +E  + G+   R          G   N+G  H+    +++A   AK  L E  LP+
Sbjct: 155 EHLVLEMGARGIGHIRYLADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEV-LPE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++ ADD   + +  R                     ++     +    +       
Sbjct: 214 DGCAVLNADDPLVRAMASRTRARVLLFGEAPEADVRGEKVRMTPDG-RPAFELHTPTGCS 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +   +G+    + E L +       R E          + 
Sbjct: 273 DVTMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVN 332

Query: 360 VDYAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL- 409
             Y     S+   L+        R    GR   V G     GD    +   +G++A+ L 
Sbjct: 333 DAYNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLN 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +       S        E   G        +   A+      L   DV++V
Sbjct: 393 VSKLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446


>gi|167764247|ref|ZP_02436374.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
 gi|167698363|gb|EDS14942.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
          Length = 475

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 71/439 (16%), Positives = 151/439 (34%), Gaps = 34/439 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +++DSR+   G +F+A+ G+  +G+ F  +A+  G+   VV  A            +T
Sbjct: 57  TGITTDSRNCPEGSLFIALKGDTFNGNAFAAKALEAGSTYAVVDEAAYAPAG------DT 110

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN    L   A+    +    I+ +TGT+GK++    +  +  +     + +G  
Sbjct: 111 RYILVDNCLHTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNVLYTLGNL 170

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +            T                 +  V + AS  G  +  ++  +   G  T
Sbjct: 171 NNPIGVPLTLLRLTTE-------------HELGVVEMGASHPGDIKELVEIAEPDYGIIT 217

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  + +  I    D      + R  N        
Sbjct: 218 NVGKAHLEGFGSFEGVIRTKGELYDYLRRQGNSTIFLHQDNPYLREIARGLNPITYGEEN 277

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                        + +   +     EG+       L GE+   NAL A  +    G+++ 
Sbjct: 278 SLYINGHVTGN--SPYLAFEWRAGKEGEFHQVHTRLIGEYNFPNALAAVTIGHFFGVEAE 335

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L +      R +   T      I   Y     S+   + N R + + + +++ G 
Sbjct: 336 KIDKALNEYEPRNNRSQLKKTA-DNTLIIDAYNANPTSMLAAIGNFRNMQAEKKMLILGD 394

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
             +  +       +I   L +           ED   +          +    +   A+ 
Sbjct: 395 MRELGKDSAEEHQRIVDYLEEY--------GFEDVILVGELFAATRHTYTTYPD-APALI 445

Query: 451 TAIEMLNK-QDVLVVAGKG 468
            A++        +++  KG
Sbjct: 446 AALQKNKPCGKTILI--KG 462


>gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 455

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 137/428 (32%), Gaps = 40/428 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    P     + ++ + +DSR I AG +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQTLNLPTPSENKPVSRIVTDSRDICAGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +          +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSHEDCAALDGALKVDDTLAALQTLAKAWRDNVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  + +R       +      ++           P+ L      
Sbjct: 103 VFGITGSGGKTTVKEMLAAVLRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + +  +  G         K  A    N  R H+                  +
Sbjct: 153 KEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVGCGFDGTLDIAKAKSEIYQ 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L ++  A+I  +D ++     +  + G +  + G     +H + +       +  +   
Sbjct: 213 GLGEDGLALIPCEDEHAAVF--QTTSQGHQQRTFGVDSGDVHAENIVLKPLSCEFDLVCG 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +    + P+PG   V+NA  A  L +A G+    V E L+    + GR           
Sbjct: 271 NERAAVVLPVPGRHNVHNAAAATALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGAT 330

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411
            I   Y    +S++  +  +  + + R I V G  G+  + +   M       A     +
Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389

Query: 412 IAIVTDDN 419
            A    DN
Sbjct: 390 AAYFVGDN 397


>gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 427

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 127/362 (35%), Gaps = 32/362 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+D+R I+   +F+A+ G+  D + F  +AI++GA  +++       +         
Sbjct: 14  TSVSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIIDDKKHHTNKDKM----- 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V ++ + L   A     +    I+A+TG++GK++    +  +  +   +   IG  
Sbjct: 69  --ILVLDSLQTLQELAKYHRQQLGLPIIALTGSNGKTTTKELINVVLSKKYNAKATIGNL 126

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
           +               P+ L    S+     +  V + A+ H  +   L  I +   G  
Sbjct: 127 NNH----------IGVPLTLL---SFDEDTDIGIVEMGAN-HQKEIELLCSIAEPNFGYI 172

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++          AK  L+  L   +  A +  DD    +           +  
Sbjct: 173 TNFGKAHLEGFGGIDGVIKAKSELYNYLEENKQTAFVNLDDEIQNQ---------KTMQI 223

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           + Y         V          + +  K       L G +   N   A  +     I  
Sbjct: 224 MRYSFSIAKESDVKIDFVVANPMVEINYKKMKIKSHLIGLYNANNISAAIAIGKYFNIAD 283

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + ++       R + +  NS    +   Y    +S+E  + N   + +   I + G
Sbjct: 284 DDIKDAIQNYIPTNNRSQLIEKNSNNIILDA-YNANPSSMEAAITNFIQLKAKDKIAILG 342

Query: 390 CG 391
             
Sbjct: 343 DM 344


>gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 457

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 157/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAYLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQDLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L+  D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           luteolum DSM 273]
 gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium luteolum DSM 273]
          Length = 476

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 151/463 (32%), Gaps = 32/463 (6%)

Query: 15  INQLSIFPMQWRERKINE--VSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             +L + P     R++ +   + DSR I   G IF+A+ G   DGH F+     +GA+  
Sbjct: 13  CGELVLNPEAHPRREVQDPVAAIDSRAIDGPG-IFIALRGESTDGHRFVQDVFRRGADFA 71

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +VS  +   +           +VV +T K L   AS      P  ++ + G++GK++   
Sbjct: 72  MVSREWHSLEKDPVPPPGKAYIVVQDTEKGLQELASIYRDTFPIPVVGIGGSNGKTTTKE 131

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               + +         G  +               PI L           +  V +  + 
Sbjct: 132 MTAAVLRTGFKVHVSRGNFNNH----------LGVPITLLGMRRD---TEIAVVEMGINH 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G  +      +   G  TN+G +H+++    +    A+ +LF+ L        + ADD+
Sbjct: 179 PGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEGVRLAERKLFDWLDRCRGTIFVNADDS 238

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              +    +                           +   T++             G   
Sbjct: 239 RLADAATDSERHVLYGTGSPEGRICSAESVSVGHGGRVSFTLTAGAVREQVFLQFTGRHN 298

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           V NA+ AA + +  G+ +A V   LE L       R E          I   Y    +S+
Sbjct: 299 VQNAVAAAAVGLHFGLSTAQVKAGLEGLLPESGWKRLELSEEGGV-TIINDTYNANPDSM 357

Query: 370 EMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + L  +  +   GR I V G     G   + +   +G+    L      T         
Sbjct: 358 RLALDTLADMPCSGRRIAVIGDMLELGATAEDEHRSIGRYLAGLPIDMFFTFGALAGLGG 417

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++         G      R E +    E +   D ++   KG
Sbjct: 418 RELPERCRGHFTG------RDELLHALQEEVRSGDAVLF--KG 452


>gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
 gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
          Length = 456

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 149/446 (33%), Gaps = 49/446 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR I  G +FV + G + DGH FI  A   GA A               +    P ++
Sbjct: 31  FDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVATFSEK----------VVEGHPYIL 79

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V++        A+    K   ++ AVTG++GK++    + Q+   + L+    G      
Sbjct: 80  VEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGN----- 134

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
               +N +  P              +G   + +E     L    L        +      
Sbjct: 135 ---YNNEIGLP-------YTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLI 184

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
                   +     AK +L       E   ++   D      +                G
Sbjct: 185 GEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVNAYLPEKQKVV-------RFG 237

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               +     I  K  +T      +     P+ G++   NA++AA + +  G+  A + +
Sbjct: 238 PDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALQEGVSEAAIRD 297

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391
             E L +   R E+    +    +   Y     ++ +IL+   TI    +GR + V    
Sbjct: 298 SFETLQLTRNRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADM 357

Query: 392 ---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442
              G++       M   ++ D+ D  I    +       ++ +++             E+
Sbjct: 358 KELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKTAEE 415

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
               + ++   E L +QD +++  KG
Sbjct: 416 DQFEDMVKQVKESLKEQDQILI--KG 439


>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
 gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
          Length = 825

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 147/398 (36%), Gaps = 25/398 (6%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            E++  L     + ++ +I EVS DSR +      +F A+ G   DGH ++ +   QG  
Sbjct: 14  KEILRILDCKACEVKDFEITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLYEQGVR 73

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             VV    +         S     VVD     L   A+   G+    ++ +TG++GK+ V
Sbjct: 74  NFVV----TGLRAGFLPLSGANFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTIV 129

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ Q+   S        P S  S       L           +    S       ++A
Sbjct: 130 KEWLYQL--LSDEPGIYRSPRSYNSQVGVPLSLLGMDVSTRLAIIEAGISLPGEMGKLQA 187

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       I+   G FT+LG  H +  +++Q     K       L ++   II  +
Sbjct: 188 -----------MIRPEIGIFTHLGDAHGENFESRQQKLAEKAI-----LFRDCRCIIGRE 231

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 +  R      +++    +   + +++  +  +++ V +  E   F    P P E
Sbjct: 232 GEALDYIASRLRPDVKKMIWGSGKNATVRVEEKGSTAHERLVAVGYEHVAFTLSIPFPDE 291

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N + A  + +  GI    + E + +L  +  R E     +R   I   Y   + S 
Sbjct: 292 ASFENCMNAVCVLLLEGISPVFIAERVARLQPLAMRMEIKDGINRCVLINDYYNSDAASF 351

Query: 370 EMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA 406
           ++ L  +    +GR  +V+     D   G+R +  ++A
Sbjct: 352 QLALNTLAMQDAGREKVVILSDFVDTGTGERELYREVA 389


>gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
 gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 456

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 130/461 (28%), Gaps = 43/461 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I       I Q            I  + +DSR I AG +FVA+ G   DGH F+ Q    
Sbjct: 9   IVNTTLGAIAQALGLDTTHPNLPITGICTDSRQIAAGNLFVALRGETFDGHQFVDQ---- 64

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
                  ++        A + S+ P L V NT             + P  ++AVTG+ GK
Sbjct: 65  -----AAAAGAIALMVEAPLSSDLPQLQVANTLSAYQRLGQWWRQQCPAKVIAVTGSVGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +    G         +      +      P                   + 
Sbjct: 120 TTTKEMIAAVLSHYGAVLKTEANFNNEIGVPKTLLQLEP-------------HHQFAVIE 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +   + G         +      TN+G  HI    +++A   AK  L  E+ P  +  + 
Sbjct: 167 MGMRARGEIALLSQIAQPDVAVITNVGTAHIGRLGSREAIAQAKCELLAEMPPGGTAVLN 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                    V +            G   + I+          +  T+             
Sbjct: 227 ADSPLLLPTVAQVWSGRTITYGLEGGTLRGIYQPPQTLHVGGRTYTV------------P 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                     +AA   +      +  L     L +  GR            +   Y    
Sbjct: 275 LAGAHHALNFLAALGVLQALDVESDRLPVQLTLELPSGRGGRYRLEPDILLLDETYNAGL 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRS 422
            S+   L  +R++   R + V G     G         +G     L  D   + D     
Sbjct: 335 ESMVAALHLLRSLPGQRHLAVLGPMRELGAFSLSFHEQVGATVAQLDLDGLFILDQ---G 391

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           E+   +      G     + G+  E +   +  L   D L+
Sbjct: 392 EEGAALAQ--GAGQIPTQQFGSHEELVEYLLRELQAGDRLL 430


>gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes sp. HGB5]
          Length = 414

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 135/443 (30%), Gaps = 62/443 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I+ G +F A+ G   DG+ F   A+++GA  +VV    ++        S    
Sbjct: 14  ISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGAAYVVVDDPAAV--------SGDRT 65

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +T + L   A     +    ILA++G++GK++    V ++           G  + 
Sbjct: 66  VLVGDTLEALQELAREYRRELAIPILAISGSNGKTTTKELVSRVLAERFEVYATHGNLNN 125

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L    +         V + AS+ G         +   G  TN+
Sbjct: 126 H----------IGVPLTLL---AMTRDTEFGVVEMGASACGEIALLASIAEPNYGILTNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++     +     K  L + L      A +  +D     +            SV  
Sbjct: 173 GRAHLEGFGGPEGIRRGKGELLDYLAANGGRAFVPREDQTLTNMAAERDGLAAEYYSVTL 232

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                H  +                                N   A  +     ID   +
Sbjct: 233 ADGIAHHLEGDYNRF--------------------------NIAAAVAVGRYFDIDGERI 266

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391
              +        R +   T      +   Y    +S+   + N       GR   V   G
Sbjct: 267 RHAVGSYMPDNNRSQRTETERNTLIVDC-YNANPSSMRASVLNFLAEPAGGRSRRVLILG 325

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNR 445
              + G          +  DI  +   NP +E      +  +  A +           +R
Sbjct: 326 DMLELGAWSE-----QEHRDIVALAARNPDAELMLVGGEFARACAGMEPQPANTALFPSR 380

Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468
            E I        +   ++V  KG
Sbjct: 381 EELIAELRRRPVENAFVLV--KG 401


>gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 504

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 150/446 (33%), Gaps = 49/446 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR I  G +FV + G + DGH FI  A   GA A               +    P ++
Sbjct: 79  FDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVATFSEK----------VVEGHPYIL 127

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V++        A+    K   ++ AVTG++GK++    + Q+   + L+    G      
Sbjct: 128 VEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGN----- 182

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
               +N +  P              +G   + +E     L    L        +      
Sbjct: 183 ---YNNEIGLP-------YTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLI 232

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
                   +     AK +L       E   ++   D      +                G
Sbjct: 233 GEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPEKQTVV-------RFG 285

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               +     I  K  +T      +     P+ G++   NA++AA + +  G+  A + +
Sbjct: 286 PDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALQEGVSEAAIRD 345

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391
             E L +   R E+   ++    +   Y     ++ +IL+   TI    +GR + V    
Sbjct: 346 SFETLQLTRNRTEWKKASNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADM 405

Query: 392 ---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442
              G++       M   ++ D+ D  I    +       ++ +++             E+
Sbjct: 406 KELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKTAEE 463

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
               + ++   E L +QD +++  KG
Sbjct: 464 DQFEDMVKQVKESLKEQDQILI--KG 487


>gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
 gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
          Length = 475

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 161/479 (33%), Gaps = 46/479 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     +L   +        E  +   V +DSR  +AG ++VA  G   DGH F+  A+
Sbjct: 1   MIQLTTRQLAQVVGGTLAGDGELVLTGPVVTDSRLAEAGSLYVARRGESADGHDFVEAAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGT 123
             GA A +                    ++V + ++  +  A  +  + P+  ++AVTG+
Sbjct: 61  GNGAVASLAEREVPG-----------TYVLVPDVQEAFARLARWMVDELPDLQVVAVTGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK+S    + Q+   +G +             + ++ +  P  +          +    
Sbjct: 110 SGKTSTKDLLGQVLAEAGPT--------IAPIESYNSEVGVPLTV-----CRIEPTTEYL 156

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              + AS  G   +         G   N+G  H+    +QQ   + K     E LP +  
Sbjct: 157 VAEMGASGPGHIAYLTAIAPPRVGIVLNVGSAHLGGFGSQQGIADTKA-AIVEGLPADGL 215

Query: 244 AIIYADDAYSKEVMKRAH-----------NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           A++ ADD     + +R             +   R  SV    + + L +         V 
Sbjct: 216 AVLNADDPLVAAMSERVTSGEVQYFSLDADRAVRDESVTAWAEDLALDEAGRARFTVAVR 275

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGT 351
                +       + G     NAL        +G+D+A  +  L +   +   R E    
Sbjct: 276 GQGGTERHPVHLRVRGAHMAANALAVLLAVRHVGVDTADAVAALSRAEAISRWRMEVTER 335

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIAL 407
                 I   Y     S+   L  +R +  GR    V       G     +   +G+ A 
Sbjct: 336 PDGVMVINDGYNANPESMRAALTALRDMAHGRRTWAVLAGMLELGPDSAARHREVGRHAA 395

Query: 408 DLADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++    ++   +   P  E    +        P  I   +  EA     + L  QDV++
Sbjct: 396 EVGVDVVLVVGDTAAPIGEGVHDVSTAAGQDGPVVISVHDSEEARSVLEDQLVDQDVVL 454


>gi|313903885|ref|ZP_07837274.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466073|gb|EFR61598.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 610

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 88/211 (41%), Gaps = 9/211 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           + E+ S S  ++ G +FVAI G + DG  F  +A+ +GA  +V       Q     +   
Sbjct: 25  VGEIRSHSARVEPGDLFVAIPGRRHDGAAFAGEALRRGARVVVA-----QQPPGQPLPPG 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC--QRSGLSSFQI 147
              L V   R  LS  A+  YG     ++ V  T       + +        +G+ +  I
Sbjct: 80  VSWLQVPCARSALSRLAANRYGHPSRRLVVVGVTGTTGKTTTTLLLHHLLSATGIPAGLI 139

Query: 148 GPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           G              LTTP P+ L + L  ++  G     +E SS G DQ R+D +    
Sbjct: 140 GSLEVRAGGHCWPGNLTTPDPLDLHRYLRVMADAGCRVAVMEVSSQGADQRRVDDVAFDL 199

Query: 207 GSFTNLGR-DHIDYHQTQQAYFNAKMRLFEE 236
           G  TNL   +H++YH T + Y  AK R    
Sbjct: 200 GVVTNLAPLEHLEYHPTYEDYAAAKGRFVAM 230


>gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
 gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
          Length = 457

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 157/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L     +  K  +T  V   
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LGITDLVERKDSLTFKVNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 456

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 76/489 (15%), Positives = 149/489 (30%), Gaps = 73/489 (14%)

Query: 10  DFPELINQLSIFP-MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +   ++  L     ++ + +    +S DSR+I    +F+AI G   DGH F+ + + +G 
Sbjct: 7   NINTILGNLKNSENLKNQSQTFKNISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A+V+            +    P  +V NT +     A          ++ +TG+ GK++
Sbjct: 67  KAVVI-----RDGMQHLLPEKFPYWLVPNTLESFQKLALHKRRTLNIPVVGITGSVGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               + ++ ++ G    +I  T    +       T                     + +E
Sbjct: 122 TKEMMGEVLKQLG----KIKLTQLNYNNEIGVGRTILDS-----------DFKDKILIIE 166

Query: 189 ASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               GL Q  +     +      TN+G  HI    +++    AK  + + L P     I 
Sbjct: 167 MGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKENITYAKCEITKYLKPSGVVIIP 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D    + + K       +V  +    K   + K   I    +   S+  +D  F   L
Sbjct: 227 ANDLFLEETLKKNWSGRIIKVDLLDINQKVDSINKKNLIGFFNRSNNSIIIEDKLFEISL 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G    +N L    +    GI+     +          +                Y  + 
Sbjct: 287 KGFHNAFNFLFVYAVAKEFGIEFKDTNKFNFLTLDGRNKIIKSKKTVIYDET---YNASP 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            SL+  + N+    +   ++         + K+        +L D  +            
Sbjct: 344 ESLKACIINLLNNPNNHFLIFGSIQELGSKSKKYH-----KELFDFIV------------ 386

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTA----------------------IEMLNKQDVLVV 464
                    I   I   +R + I  A                       +   K D ++V
Sbjct: 387 ------KSDIKKCIFICDRNDEIYYADYLKKSTKFIFFNDVNKVGITINKYTKKGDFILV 440

Query: 465 AGKGHETVH 473
             KG     
Sbjct: 441 --KGSRNWQ 447


>gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
 gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
          Length = 474

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 150/413 (36%), Gaps = 29/413 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+        ++ ++    I+ +++D+R++    +FVA+ G   D HLF+  A
Sbjct: 1   MIRLTLEEIAQATQGKLLRTKDALLSIDAIATDTRNLAEQALFVALKGENFDAHLFLDNA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTG 122
           I+ GA+A++V  A            +  ++VV +TR  L   ++ +  K    N +A+TG
Sbjct: 61  ISTGAKALLVEQASD---------HDIAMIVVTDTRLALGALSAYVRDKIKGLNCIAITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    +  + +        +  T+   +      LT               +   
Sbjct: 112 SNGKTTCKELLSAVLREHCQDDSALLATAGNFNNEIGVPLTLL---------RLTQNTRF 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A+  G   +    ++       N+   H++   +     ++K  ++  L    +
Sbjct: 163 AVLELGANHPGEINYTAQLVQPKVALINNIMAAHLEGFGSLAGVASSKGEIWRHLQADGT 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D     + +      C         +                   +  K    
Sbjct: 223 AVVNLDADFSQTYLSQLQAQGQCIFTFSQTLAQANFFADAIEFDAHGNANFILHVKTPIC 282

Query: 303 ------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG+  V NAL  A + +A+G     V + L +L  V GR   +  N    
Sbjct: 283 TGTQSISLKIPGQHNVSNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEVNDFLT 342

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIAL 407
            I   Y   S S++  +  +   ++ + +++   G  G   + +   +G+ A 
Sbjct: 343 IIDDTYNANSASVKAAINVLCATSTKQALILSDMGELGTHTELEHQKVGEYAA 395


>gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
 gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
          Length = 456

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 159/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKRVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASNSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHKAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 457

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 158/480 (32%), Gaps = 52/480 (10%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +   ++  +        +      +S DSR I    +F+AI G   DGH F+ + + +G
Sbjct: 6   SELKNVLGDIKNLKEGGEDFLNFKNISIDSRTILKDDLFIAIKGKDFDGHSFLSEVLKKG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +++V+      +    ++  + P  VV++T +     A     K    I+A+TG+ GK+
Sbjct: 66  VKSVVI-----KKGMQKSLPIDFPCWVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    + ++ ++ G         +           T                     + +
Sbjct: 121 TTKEMMGEVLKKLGRIKLSYSNFNNEIGVGLTILDTDVE---------------DKVLVL 165

Query: 188 EASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           E    GL Q  +     +      TN+G  HI    +++    A      + L  +   I
Sbjct: 166 EMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITYA-KCEISKFLNPKGVVI 224

Query: 246 IYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           I A+D+  +E +K                    +F     +   +N    TIS++   F+
Sbjct: 225 IPANDSLLEETLKEFWKGRVIKVELLNIENQNERFKKDDNLRGFYNPSNKTISIQENTFE 284

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             F         N L A G+   +GID +   +          +   +  + +       
Sbjct: 285 ISFGGF--HNASNFLFAYGVAKELGIDFSSFNKFNFASLGGRNK---ILKSVKTTIYDES 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y  +  S++  +K +          +FG            +G+ +           +N  
Sbjct: 340 YNASPESVKACIKTLLE-KPRNQFFIFGSMQ--------ELGEESEKYHKEIFNLINNSD 390

Query: 422 SEDP--------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            E          E+I A  +     F+   N  +  +   +   K D +++  KG     
Sbjct: 391 IEKCLFICDKKNERIYANYLKDNKKFLVLNNIKDVPKEINKSTKKGDSILI--KGSRCWQ 448


>gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK115]
          Length = 456

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 159/481 (33%), Gaps = 55/481 (11%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSEHPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKIVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H+  E +        L G   +    +                 +  + +  +  
Sbjct: 163 HLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPAD-- 220

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                              K  +        +   G    +   C    K  ++      
Sbjct: 221 -------------------KIVNEFLPADCKLVRFGPDADIFLTCLEERKDSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+   +  G+  A + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIASYAALQEGVSEAAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467
           TD     +D E +     EI   G   +  K +     E ++ A+   L   D +++  K
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLTPADQILL--K 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 428

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 72/471 (15%), Positives = 167/471 (35%), Gaps = 49/471 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K    +++++        + +I  V  DSR +Q G +F AI     +G+ +I   + +GA
Sbjct: 2   KILFNILDKIFGIKSVVEKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA 57

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++  +            ++  ++ V++T K +   A +        ++A+TG++GK++
Sbjct: 58  ALVIADN---------YKGNDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTT 108

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +  +  +++  +G          +N +  P  I     L          + + 
Sbjct: 109 TKDMIYSVLSQKYVTAKTMGNL--------NNHIGVPFTI-----LQLDEKCEAAVLELG 155

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G        ++   G  TN+G  H+++ +T++  F AK  L + +  +        
Sbjct: 156 MSGFGEIDLLSSIVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIVFGDD 215

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                   +K  +          +                    +S E ++  +   L G
Sbjct: 216 PFLKDLNGIKVGYENNNNYQIKNFTDSDEG--------------LSFEMEEKKYTVSLNG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +    N  +A  +   +G+    +   L+ L + P RF+ +   +         A   + 
Sbjct: 262 KHNCINTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKIEKENIIYINDAYNASPISV 321

Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +    +       I V G     G+++      + + A     + I TD      + 
Sbjct: 322 SFSLETFDKLYNDALKITVLGDMLELGEKEIEYHENIIEKA-----LIIHTDKIYLYGER 376

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
                ++I G    I      E I+  +E  + +  +++ G +G +   I+
Sbjct: 377 MAKALKVIQGNKEKITHFTNKEDIKNILEKEHGKTAVLLKGSRGMKLEEII 427


>gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 456

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 150/446 (33%), Gaps = 49/446 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR I  G +FV + G + DGH FI  A   GA A               +    P ++
Sbjct: 31  FDSRLIGPGDLFVPLKGAR-DGHDFIETAFENGAVATFSEK----------VVEGHPYIL 79

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V++        A+    K   ++ AVTG++GK++    + Q+   + L+    G      
Sbjct: 80  VEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGKTTTKDMLAQLLSTTYLTYKTQGN----- 134

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
               +N +  P              +G   + +E     L    L        +      
Sbjct: 135 ---YNNEIGLP-------YTVLHMPEGTDKLVLEMGQDHLGDIHLLSELAHPKAAIVTLI 184

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
                   +     AK +L       E   ++   D      +                G
Sbjct: 185 GEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPENQTVV-------RFG 237

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               +     I  K  +T      +     P+ G++   NA++AA + +  G+  A + +
Sbjct: 238 PDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIAAYVALKEGVSEAAIRD 297

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391
             E L +   R E+   ++    +   Y     ++ +IL+   TI    +GR + V    
Sbjct: 298 SFETLQLTRNRTEWKKASNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADM 357

Query: 392 ---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442
              G++       M   ++ D+ D  I    +       ++ +++             E+
Sbjct: 358 KELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKTAEE 415

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
               + ++   E L +QD +++  KG
Sbjct: 416 DQFEDMVKQVKESLKEQDQILI--KG 439


>gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 469

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 135/400 (33%), Gaps = 32/400 (8%)

Query: 27  ERKINEVS-SDSRHIQAGWIFVAIVGNKE-DGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
              +N +   +S+ IQ G +F+A+      DGH F+  A+A+GA+A++VS          
Sbjct: 20  NVNVNGIVQFNSKDIQPGDLFIALQSENGGDGHQFVKDALARGADAVIVSKLIDN----- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              +N  I++V+NT   LS  A+    +      + +TG+ GK+S    + ++      +
Sbjct: 75  --NTNDKIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTSTKEIMFKVFSTHYKT 132

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                  + +                     S   +       +   S G  Q  +  + 
Sbjct: 133 FASRKNFNNLLGMLL-------------NLASVPINTEYAIFELCTRSPGELQKLVKILP 179

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII---YADDAYSKEVMKRA 260
           L     TN+   H ++  + +    AK  +F  L+ K    I           + + K  
Sbjct: 180 LNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFFTKQLEYINKLG 239

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            N      +       I      A + K  + I+  G D  F   + G  Q +N      
Sbjct: 240 INNVFTFGTHQLSNSRILNYYYDADNQKSVININCNGYDLQFYTQILGYGQAFNIAAVML 299

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMILKNIR 377
           +     I+   V E +  L    GR +    N        +D  Y     S++  L  + 
Sbjct: 300 VSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDLLD 359

Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
            I + R + + G     G+  +     +           I
Sbjct: 360 QIKAKRKVAILGDMLELGNNTKEHHLNLVTYIKKYNIHVI 399


>gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 457

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 79/485 (16%), Positives = 158/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I+   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLILAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
          Length = 477

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 95/474 (20%), Positives = 164/474 (34%), Gaps = 44/474 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +     E+   +   P+      +  +S DSR +  G  F AI G+K DGH F   AIA 
Sbjct: 3   LLWTVQEMTEAMDGRPLGNLPDGVTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAAIAT 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +VV+ A       A  R   P++VV++    L         +    I+A+TG+ GK
Sbjct: 63  GAALLVVAEA----KLPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S    +++  + SG         +               P+ LA+  +        +  
Sbjct: 119 TSSKEMLRRALEPSGEVHASAASFNNHWGV----------PLTLARMPA-----SAQYGV 163

Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            E   +  D+ R  +  ++      T +   H+   +       AK  + E ++      
Sbjct: 164 FEVGMNHPDEIRPLVKMVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVVKNGHVL 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           +   ++ +S    + +  +  +VL+ G   K    L     + +   +T  +   D    
Sbjct: 224 LNRDNEKFSWLKKRASELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKDDVVVK 283

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG---RFEFVGTNSRGGRIYV 360
              PG   V NAL   G     G D A     L  +    G   R E          I  
Sbjct: 284 IGAPGRHLVQNALAVLGAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDE 343

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIA 413
            Y     S+   L+ +R       GR I V G   +     ++  R +   +    AD+ 
Sbjct: 344 SYNANPASMRAALELLRDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMV 403

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---IEMLNKQDVLVV 464
            +      SE        +   +   +E   R  A   A     +L   DV++V
Sbjct: 404 CL----SGSE-----MKALRDELGNEVETVYRDTADDLADHLKNVLRDGDVVMV 448


>gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
 gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
          Length = 457

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 159/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQVVGAKNNVSLFADAQLEKAEFDSRLIATGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIEIAFENGAAVTLSEKKVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  ++   D     +++       +V+  G   +   L+    I  K  +T      
Sbjct: 209 MSSNSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLIERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQNLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGVNDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
 gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
          Length = 433

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 121/360 (33%), Gaps = 26/360 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I    +F A+ G+K + + F  QA+ +GA   ++              ++   
Sbjct: 17  VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGAAYAIID--------DQQYHTDERC 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V +    L   A     +    ++ +TG++GK++    ++ I      +    G  + 
Sbjct: 69  ILVPDVLTALQDLARSHRIELRIPVIGLTGSNGKTTTKELIKAILSEKYRTFATSGNLNN 128

Query: 153 ISSFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                      T    I + +  +    +     S+    +GL               TN
Sbjct: 129 HIGVPLSILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGL--------------ITN 174

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+D     +     K  L+  L  ++  A I  D+ Y  E+   A  +        
Sbjct: 175 VGMAHLDGFGGFEGVKKGKAELYAHLKQQQGKAFINNDNPYLLEMAHTAQLSDIVYYGSE 234

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       +     +++   +G +F     L G +   N L A  +     +    
Sbjct: 235 RSNTISGALN--STDPFLELSWQKQGSEFSVGTQLTGAYNFENILAAICIGDFFSLTPEQ 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + L        R +   T          Y    +S+   LKN+ ++ +   +V+ G  
Sbjct: 293 INKGLSGYAPQNNRSQLTKTEHNTVICDF-YNANPSSMNAALKNMDSLHAANKVVIIGDM 351


>gi|227539119|ref|ZP_03969168.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300770625|ref|ZP_07080504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241020|gb|EEI91035.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300763101|gb|EFK59918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 433

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 137/390 (35%), Gaps = 32/390 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R+I  G +F A+ G   +G+ F  QA+  GA  +++  A   +D           
Sbjct: 16  VSTDTRNILPGSLFFALKGANFNGNSFADQALQTGASYVIIDEASYAKDG--------RY 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+         ++ VTGT+GK++    +     +   +    G  + 
Sbjct: 68  ILVDNVLESLQKLANHHRKTLSIPVIGVTGTNGKTTTKELLHATLSQKFKTYATKGNLN- 126

Query: 153 ISSFAQDNRLTTPSP---IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +       L +      I + +  +    +      +   +HGL               
Sbjct: 127 -NHIGVPLTLLSVDSTIQIAVIEMGANHLKEIAFLCDIAEPTHGL--------------I 171

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +N+G+ H++   + +     K  L++ L        + AD+ +  E+      +      
Sbjct: 172 SNVGKAHLEGFGSFEGVKKTKGELYDYLQNHNGTLFLQADNPHLNEMAATRKISEVVTYG 231

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  I          + +     +   +     L G +   N L A  + +  G+ +
Sbjct: 232 FAETNDVIGKLLKADPLLQIEWKEKDKPDSYTVHTQLTGSYNTENFLAAIAVGLYFGVSA 291

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387
             +   +E+      R +   T          Y   ++S+   L NI  I + R +++  
Sbjct: 292 EQINTGIERYTPKNNRSQVTKTEHNTIIADY-YNANASSMAAALDNIEVIDASRKVIILG 350

Query: 388 --FGCGGDRDQGKRPIMGKIALDLADIAIV 415
             F  G + D     ++ +     AD  I 
Sbjct: 351 DMFEMGDESDAEHEKVVQRAKSIGADRLIF 380


>gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
 gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
          Length = 448

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 162/453 (35%), Gaps = 53/453 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   +++    E+    S+        +I  V  DSR +Q G +F AI     +G+ +I
Sbjct: 21  MK---ILFNILDEIFGIKSVVETN----EIGHVVMDSRKVQKGDLFFAI----NNGNNYI 69

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              + +GA  +V  +            ++  ++ V+NT + +   A +        I+A+
Sbjct: 70  EDVLNKGAALVVADN---------YKGNDKRVIKVENTVESMQKLAQKYREALDIKIIAI 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  +  +++  +G          +N +  P  I    +   ++  
Sbjct: 121 TGSNGKTTTKDMMYSVLSQKYVTAKTMGNL--------NNHIGVPFTILQLDSKYEVA-- 170

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +  S  G      +  K   G  TN+G  H+++ +T++  F AK  L + +  +
Sbjct: 171 ---VLELGMSGFGEIDLLSNIAKPDIGVITNIGDSHLEFLKTRENVFKAKTELIKYITKE 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    D    +++           +   +      K +    ++ +  +++ GK  
Sbjct: 228 NLIIF---GDDPFLKILDGIKVGYGDNNNYQIKNFMDSDKGLSFELDENKYEVALNGK-- 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                        NA +A  +   +GI    +   L+ L + P RF+ +   +       
Sbjct: 283 ---------HNCLNAAMAVVIGKKMGIPYEEIKAGLKNLELTPMRFQKIEKENIVYINDA 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRP-IMGKIALDLADIAIVT 416
             A   +    +    +       IVV G     G+ +      I+ K      D   + 
Sbjct: 334 YNASPISVSFSLETFDKLYNDTLKIVVLGDMLELGENEIEYHKNILDKALNIHTDKIYLY 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            +  R     +   E    I  F EK    +AI
Sbjct: 394 GE--RMRKALEYIKENREKITHFTEKEEIKKAI 424


>gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
 gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
          Length = 470

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +N +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWHVNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR------RPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V++ +  L         +    ++AVTG+ GK+S    + ++    G +   
Sbjct: 73  SEDAPLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132

Query: 147 IGPTSTIS 154
           +   +   
Sbjct: 133 VASYNNHW 140


>gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
 gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
          Length = 458

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 153/443 (34%), Gaps = 37/443 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR + AG  FV + G + DGH F+  A  QG +A VV+    +      +  +   
Sbjct: 33  VCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVARDSDIP-----VPQSLLH 87

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +VD+T +     A  +       ++A+TG++GK++    ++      G     IG  + 
Sbjct: 88  WIVDDTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALAPLGAVQASIGNNN- 146

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L       +      V +     G  +      +      TN+
Sbjct: 147 ---------NDVGVPLTLLGVDEQHA---AVVVEMGMRGPGEIERLSRCAEPEIAVITNI 194

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI    +++A   AK  +   L P     I   D      + +       RV  V  
Sbjct: 195 GTAHIGRLGSREAIAAAKCEITAALSPDGLVVIPAGDPLLDAALAQCWSGRVRRVALVDD 254

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                H+      +N     IS+    ++   PL G     N ++A  +   +G+  A +
Sbjct: 255 ANDSEHVADDLGDYNPLTGRISLGNDSYNC--PLEGRHNARNFMLAIAVARTLGVAPADL 312

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           ++   ++     R         G    +D  Y  +  ++   L  +     GR   V G 
Sbjct: 313 VQLKVEVPGGRNR-----KRQIGSLTILDETYNASPEAVFAALDLLAA-QPGRRFAVLGT 366

Query: 391 GGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
             +         R ++   A    D  +V      +    K  ++     P F +     
Sbjct: 367 MLELGTDSVGLHRAVIDHAATLNLDGLVVVA----TGAEAKAMSDASSRWPQFQQVETPE 422

Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468
           +A    IE L   D +++ A +G
Sbjct: 423 QAAEPLIEWLRPGDTVLLKASRG 445


>gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
 gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
          Length = 452

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 152/391 (38%), Gaps = 31/391 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +Q  + K+N V++D+R I+ G +F A+ G + D H F+  A   GA A +V       + 
Sbjct: 14  LQGDDLKVNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTGGAIAALVDREQDSFES 73

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
           +         + V ++R+ L   A     +     LAVTG +GK++V      +      
Sbjct: 74  A---------VRVADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVKEMAAAM------ 118

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +T  +F  D  +    P+ L +  +         + + A++ G         
Sbjct: 119 --LGDGTLATHGNFNNDVGV----PLTLLRLRAEHR---FAVIELGANAPGEIAWTSSLT 169

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      TN+   H++   + Q   +AK  +F    P    AII  DD+++    ++A  
Sbjct: 170 RPQVVLVTNVTGAHLEGFGSMQGIADAKAEIFGGCTPGGQ-AIINNDDSFADFFAEKARA 228

Query: 263 AG---CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           AG    RV           L       ++ +    ++        PLPG  QV NAL+A 
Sbjct: 229 AGLTVVRVSMDESTRTGADLYAENIALHRDRAEFVLQPLGEAVTVPLPGAHQVSNALMAC 288

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A+G++   VL  L  L  VPGR         G  +   Y     S+   +  +   
Sbjct: 289 AAVRALGVNLPQVLPRLAALKPVPGRMHIQAAG-AGAVVDDTYNANPGSVRAAIDWLAAQ 347

Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
            + +++V+   G  G +       +G+ A  
Sbjct: 348 PAPQMLVLGAMGELGPQADSLVEELGEYARQ 378


>gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
          Length = 463

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/481 (15%), Positives = 157/481 (32%), Gaps = 55/481 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL      +  ++++  +       +  ++ +  DSR I  G +F+ + G + DGH FI
Sbjct: 1   MKLT---LHEVAKIVDAQNNV-SDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA A                    P L+V++  K     A     K   +++AV
Sbjct: 56  DLAFQNGAVATFSEKEL----------PGKPHLLVEDCLKTFQKLAHYYIDKMRVDVIAV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+S    +  +   +  +    G                  P  +          
Sbjct: 106 TGSNGKTSTKDMIGAVLSTTYKTYKTQGN----------YNNEIGLPYTVLHMPDDTEK- 154

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E     +   RL                             A+ ++       
Sbjct: 155 ----IVLEMGQDHMGDIRLLSEIARPRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMN 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I   D      +                G    +       +K  +T +      
Sbjct: 211 SDGILIAPGDPIIDPYLPENQMVI-------RFGNQQEIDVTGIQEDKDSLTFTTNVLAT 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG++   NA+VAA +   + +    ++  L+ + +   R E+    +    +  
Sbjct: 264 PVSLPLPGKYNATNAMVAAYVGKLLAVTDEDIIAALQTVTLTGNRTEWKKAANGADILSD 323

Query: 361 DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIA 413
            Y     ++ +IL+    I     G+ I V     +  +    +  ++   L     D  
Sbjct: 324 VYNANPTAMRLILETFANIAKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQL 383

Query: 414 IVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGK 467
           +   D+ +  +  ++ +++     +H      E+ ++ EA+   ++  LN  D +++  K
Sbjct: 384 VFYGDHIK--ELARLASQVYPAEQVHYFLKA-EQEDQFEAMAQYVQNILNPFDQILL--K 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 440

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 133/396 (33%), Gaps = 46/396 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       Q  +  +N++  DSR I+ G IF+ + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA                        L+VD+        A     K    ++
Sbjct: 54  FIEIAFDNGAIISFSEKEVEQAH-----------LLVDDNLAAFQTLAKYYLEKTKVPVI 102

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +  +   +    G  +          L  P           + 
Sbjct: 103 AVTGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNN-EIGLPYTILHMPEDTEKLVLEMGMD 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G      + +   L    L G   +    +           T                
Sbjct: 162 HPGDIDFLSQLAQPELALITLIGEAHLEFMGSRENIAKGKMGITA--------------- 206

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +     A +  ++        ++   G  G+ + + K+    +K+++T      
Sbjct: 207 -----GLHGELIAPADPIINAFIPENQKISRFGLPGEDLFITKLI--EHKERLTFETNFL 259

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+PG++   NA++AA + +  G+  A +   L+++ +   R E+  + +    +
Sbjct: 260 DESITIPVPGKYNATNAMLAAYVGLHYGLTEAEIKNALKEVELTRNRTEWNKSKNGADLL 319

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG 391
              Y     ++ +IL+  + I    +GR I V    
Sbjct: 320 SDVYNANPTAMRLILETFQAIPKNENGRKIAVLADM 355


>gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 471

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 142/406 (34%), Gaps = 26/406 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR ++ G +FVA+ G + DGH ++     QGA  ++VS  +  ++ S         
Sbjct: 31  VVIDSREVKGGELFVALKGERTDGHCYVSNVFQQGASWVMVSREWYEKEGSPQPPEGKGF 90

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +V D+    L   AS         ++A+ G++GK++    V  +           G  + 
Sbjct: 91  IVTDDPVSGLQQLASCYRKTFSIPVVAIGGSNGKTTTKEMVASVLATGFTVQMSQGNRNN 150

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P               G+  V V  +  G  +      +   G  TN+
Sbjct: 151 HLGVPLTLLQLRPD-------------TGIAVVEVGINHPGEMEELTAIARPTHGLLTNI 197

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G +H+++         A+ +LF  L      A +   D         A        +   
Sbjct: 198 GHEHLEFLIDLDGVAAAETQLFTYLQESGGTAFVNG-DDSRLRAAGEALEGPVIYGTADL 256

Query: 273 QGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            G+    + +    + +    +    +         G+  V NA+ AA + +  G+  + 
Sbjct: 257 PGRICRARDISVCRDGRISFVLCSADRTEPVTLNFTGKHNVINAVAAAAVGLHFGLPLSR 316

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFG 389
           + E LE L   PG       +S G RI  D Y   S+S+ + +  +  +   G+ I V G
Sbjct: 317 IREGLESLVPAPGWKRLEVMDSGGLRILNDTYNANSDSMRLAIDALCDLPCEGKRIAVLG 376

Query: 390 CG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAE 431
                G     +   +G+ I     D+  V       E    I  E
Sbjct: 377 DMLELGAAGDVEHESIGRYIHGSRVDLLYV-----YGEKARLICRE 417


>gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
 gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
          Length = 474

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 165/451 (36%), Gaps = 43/451 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ +S D+R +Q G +FVA+   + DGH F+  A+ +GA A +V    +  +        
Sbjct: 31  VSGISIDTRTLQPGDLFVALQDAR-DGHDFVAAAMEKGASACLVERGDTGVE-------- 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L+V +  + L    +    +     +AVTG+ GK+SV   +  + + SG + + +  
Sbjct: 82  -PALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKTSVKEALAAVFRSSGPAHWSVKS 140

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+        G     +  +  G  +     ++      
Sbjct: 141 YNNHWGV----------PLTLARMPRD---TGRAVFELGMNHAGEIRDLSSLVRPHVALI 187

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-- 267
           T +   H+++  + +A  +A      + L ++  AI  +DD  ++ + + A ++      
Sbjct: 188 TRIAPAHLEHLGSVEAIADA-KSEIFDGLEQDGVAIYPSDDPLAERIARHARHSCAAFLL 246

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                    I +++     +  +   +V G    F     G    +NA          G+
Sbjct: 247 DFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIFAAAAGAGL 306

Query: 328 DSALVLEHLEKLHVVPGRFE--FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----T 380
           D+  V E L  +   PGR     +     G    +D A+ +N + M              
Sbjct: 307 DARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSMAAAIAALGAADPGP 366

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI---AIVTDDNPRSEDPEKIRAEIIHGIP 437
            GR I V G   +    +  +  ++A  LA     +++T          K   + +    
Sbjct: 367 DGRRIAVLGDMLELGPDEDRLHAELADHLAAAGVDSVLTCGR-----RMKHLHDALPKTV 421

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +    +     ++   DV+++  KG
Sbjct: 422 RAGYAQDAAGGLEQVKSLVRSGDVVLI--KG 450


>gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 438

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 93/471 (19%), Positives = 150/471 (31%), Gaps = 50/471 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L   +               +   +  ++  S DSR  + G +FV IV  + DGH FI
Sbjct: 1   MRL---LASQIAAATGGT----LHGPDATVDSASIDSRSARPGQLFVPIVAAR-DGHDFI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P A+  GA   +   A                + V +T + L+     +    P +++ V
Sbjct: 53  PSAVQAGAPVYLTDRAPD-------PALGATAVQVADTAEALADLGRFVRAGLPGSVVGV 105

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +          +  +G T   ++  +        P+ L  A       
Sbjct: 106 TGSVGKTSTKDLL----------AGVLGTTFRTAASEKSFNNELGLPLTLLGAPDD---T 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A   G             G  T +   H++   +      AK  L E  LP 
Sbjct: 153 EAVVLEMGARGVGHIAQLCSIASPTVGVLTRVEAVHLEMFGSLDDVAQAKGELVEA-LPA 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++ AD      +  R          V           V     +   T+       
Sbjct: 212 DGLAVLNADHPVVAAMTSRTSARVL-TYGVDPGADVRATDIVLDDELRASFTLHSPWGTT 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                  GE QV NAL AA     IG+    + E L   ++   R E   T +    I  
Sbjct: 271 AVRLGARGEHQVSNALAAAAAGGGIGVPIEKIAEGLLGANLSGLRMELSTTAAGVTIIND 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S+   L  +  I +GR   V G     GD        +   A+ L  + ++  
Sbjct: 331 AYNANPTSMAAGLSALARIDAGRRFAVLGTMAELGDDSAAAHREVADQAVALG-VTVIAV 389

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D P                 G         A+  A+  L   D ++V  KG
Sbjct: 390 DEP-------------AYGAGVTHVSGVDGAVD-ALGDLRSGDAVLV--KG 424


>gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 426

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 124/364 (34%), Gaps = 29/364 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + ++S+ ++ G IF+A+ G   DG+ F  +AI+ GA   +V                 
Sbjct: 4   SGIETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDKRVFSCRK------- 56

Query: 91  PILVVDNTRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I+ VD++  FL   A     +     I+A+TG++GK++     + I  R          
Sbjct: 57  -IIYVDDSLHFLQKLAMYHRYQLRHIPIIAITGSNGKTTTKELTKTILSRKYEKVHFTKN 115

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                       L+ P  I    ++  + +     +    S           IK   G  
Sbjct: 116 NLNNHIGIPLTILSMP--INTQISVIEIGANHEKEIDKMCSI----------IKPDYGYI 163

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++  ++ +     K+ L+  L   +    +  DD      ++   + G +   
Sbjct: 164 TNFGKAHLEGFKSIEGIIRGKLELYNFLKKNKKVVFVNGDDP-----IQLDKSIGMKRYI 218

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              +       K+  + N+    +       +      L G + +YN   A  +     I
Sbjct: 219 FSEKEDKKSNVKIKYLWNQVGCDLKSILYVDNTKISSSLIGNYNLYNIASAISIGKYFKI 278

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               + + +E+      R + +   +    I   Y     S+   L        G  I +
Sbjct: 279 SLEKIKKAVEEYIPKNHRSQIMNKKNTKIIIDC-YNANPTSMIKALTFFNNNIKGNKIAI 337

Query: 388 FGCG 391
            G  
Sbjct: 338 LGDM 341


>gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK160]
          Length = 456

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/484 (17%), Positives = 154/484 (31%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   L       Q+    +     DSR I+ G +FV + G + DGH 
Sbjct: 1   MKL------YLYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A  QGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIATAFTQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFDCNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+  A + +   +L +   R E+    +    +
Sbjct: 262 EQKIDLPVTGKYNATNAMIAAYAALQEGVSDADIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1056]
          Length = 456

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 155/484 (32%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I+   +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIEPDDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSERPVAEGA----------YILVDDVLMAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKNSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEIIH-GIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPLGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK408]
          Length = 456

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/484 (17%), Positives = 154/484 (31%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   L       Q+    +     DSR I+ G +FV + G + DGH 
Sbjct: 1   MKL------YLYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A  QGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIATAFTQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFDCNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+  A + +   +L +   R E+    +    +
Sbjct: 262 EQKIDLPVTGKYNATNAMIAAYAALQEGVSEADIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 475

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 138/393 (35%), Gaps = 26/393 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +   + DSR ++AG +F A+ G + DGH F+ QA+A GA   V++   + +       
Sbjct: 23  VTVAGGAVDSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARGAVIARPLA-EVLPGGPP 81

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             T ++ V +TR+ L+  A  +  + P   ++ +TG+ GK++       + ++       
Sbjct: 82  PGTAVVEVADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTKEMTAAVLEQRFAVLKT 141

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLI 205
            G          +  +  P  +                  +E +  GL +  RL  I   
Sbjct: 142 AGN--------YNTDIGLPLIL-------LDLEDHHQVAVLEMAMRGLGEIARLASIAEP 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
                 +  +                    E LP +  AI+ A D   + +  R      
Sbjct: 187 DIGVVTVVAESHLEFLGSLEKIAQAKGELVEALPADGVAILNAGDPRVRAMAARTRARVL 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIA 324
                G  G  +    V +     +  + + G D       LPG   V  AL AA + + 
Sbjct: 247 TFGVEG--GADVRAVAVESRGPGTRFRLEIPGGDAATVELALPGPAAVTCALAAAAVGVV 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383
           +G+D+  +   L +      R E     S    I   Y  +  S    L+ +R +    R
Sbjct: 305 LGLDADAIAAGLGRARPASLRSEIRQAGSWTLFIDC-YNASPTSTAAALQALRQVAGDRR 363

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIA 413
            + + G     GD  +      G+ A    D+ 
Sbjct: 364 AVAILGDMFELGDWAEEGHRRTGQAAARSVDVL 396


>gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV104]
          Length = 457

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/485 (15%), Positives = 157/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI +A   GA A +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIERAFENGAAATLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGVQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK72]
          Length = 456

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 157/481 (32%), Gaps = 55/481 (11%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              L+VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSERPVAEGA----------YLLVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGN-YNNEIGLPYTVLHMPEDTEKLVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H+  E +        L G   +    +                 N  + +  +  
Sbjct: 163 HLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRENGLLIVPAD-- 220

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                              K  +        +   G    +        K  ++      
Sbjct: 221 -------------------KIVNEFLPTGCDLVRFGPDADIFLTRLEERKNSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467
           TD     +D E +     EI   G   +  K +     E ++ A+   L   D +++  K
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLTPADQILL--K 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1]
          Length = 456

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 158/484 (32%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FIP A AQGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIPTAFAQGAAATLSEHPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKNSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEIIH-GIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K ++        +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPLGKVHYFIKNDQKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
 gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
          Length = 500

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 10/146 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
             +  E +  L+        +   ++ +D+R I+ G IF+AI G+  DGH ++  A  +G
Sbjct: 8   SANLTEALKDLNPTFHSDFTQTSKKIITDTRKIEQGDIFLAIQGDNFDGHDYVKTAKDKG 67

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGK 126
           A   +VS A           S+ P LVV +T+  L    +    +HP   ++A+TG+SGK
Sbjct: 68  AVLAIVSRAVE---------SDLPQLVVTDTKLALGKLGAYRRDQHPNLKVVAITGSSGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTST 152
           ++    +  I  R   +    G  + 
Sbjct: 119 TTAKEMLGSILNRIAPTLITRGNLNN 144


>gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
          Length = 457

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/485 (16%), Positives = 156/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTVIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                  +   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLFLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAVNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
 gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 448

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/471 (15%), Positives = 167/471 (35%), Gaps = 49/471 (10%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           K    +++++        + +I  V  DSR +Q G +F AI     +G+ +I   + +GA
Sbjct: 22  KILFNILDKIFGIKSVVEKNEIGHVVMDSRKVQKGDLFFAI----NNGNSYIDDVLEKGA 77

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++  +            ++  ++ V++T K +   A +        ++A+TG++GK++
Sbjct: 78  ALVIADN---------YKGNDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKTT 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +  +  +++  +G          +N +  P  I     L          + + 
Sbjct: 129 TKDMIYSVLSQKYVTAKTMGNL--------NNHIGVPFTI-----LQLDEKCEAAVLELG 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G        ++   G  TN+G  H+++ +T++  F AK  L + +  +        
Sbjct: 176 MSGFGEIDLLSSIVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIVFGDD 235

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                   +K  +          +                    +S E ++  +   L G
Sbjct: 236 PFLKDLNGIKVGYENNNNYQIKNFTDSDEG--------------LSFEMEEKKYTVSLNG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +    N  +A  +   +G+    +   L+ L + P RF+ +   +         A   + 
Sbjct: 282 KHNCINTAMAIVIGKKMGVSYEEISNGLKNLELTPMRFQKIEKENIIYINDAYNASPISV 341

Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +    +       I V G     G+++      + + A     + I TD      + 
Sbjct: 342 SFSLETFDKLYNDALKITVLGDMLELGEKEIEYHENIIEKA-----LIIHTDKIYLYGER 396

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
                ++I G    I      E I+  +E  + +  +++ G +G +   I+
Sbjct: 397 MAKALKVIQGNKEKITHFTNKEDIKNILEKEHGKTAVLLKGSRGMKLEEII 447


>gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 461

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 141/428 (32%), Gaps = 48/428 (11%)

Query: 1   MKLQDLIYKDFPELINQLS--IFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +          +  +N++  DSR+I  G +F+ + G + DGH 
Sbjct: 1   MKL------TLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA A     A           S  P ++V+N        A     K   +++
Sbjct: 54  FIDLAFENGAVATFSERAI----------SGRPYILVENCLAAFQKLAQYYIDKLRVDVI 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK+S    ++ +  ++  +    G                  P  +        
Sbjct: 104 AVTGSNGKTSTKDMIEAVLAKAYKTYKTQGN----------YNNDIGLPYTVLHMPEDTE 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +           L   R+   +      T +G  H+ Y  +++    A+ ++     
Sbjct: 154 KIVLEMGQDHMGDIQL-LSRIA--RPHIAVLTLIGEAHLAYFGSREKI--AEGKMQIVDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  +I   D      +  +             G    L        K  +T      
Sbjct: 209 MDSNGILIAPGDPILDPYLPDSQMVI-------RFGDHQELVVEDIKECKDSLTFRTNVL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 PL G++   NA++AA +   + +    ++E LE + +   R E++   +    +
Sbjct: 262 PRPVTIPLTGKYNATNAMIAAYVGKLLAVPDEDIIEALEAVKLTRHRTEWLKAANGADLL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLAD 411
              Y     ++ +IL+    I    +G+ I V     +       +  ++         D
Sbjct: 322 ADVYNANPTAMRLILETFAAIPANPNGKKIAVLADMKELGADSVALHSQMITSLDPKRID 381

Query: 412 IAIVTDDN 419
             +   D+
Sbjct: 382 QLVFYGDD 389


>gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
 gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
          Length = 456

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 159/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + +  + +   DSR I AG +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQVVGAKNDVTIYPDSPLVKAEFDSRLIAAGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEIA----------NHPYILVDDVLTAFQSLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   S  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTSYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+ +  +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEIIDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQHLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGINDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 457

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/485 (16%), Positives = 156/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                  +   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLFLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAVNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
 gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
          Length = 453

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 163/464 (35%), Gaps = 41/464 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++ ++    +   + +I EV +D+R + AG +FVA+ G + D H F          A  V
Sbjct: 8   VLAEILSAELIGADSQIIEVKTDTRKVTAGCLFVALKGERFDAHDF---------AAAAV 58

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           ++       S  +  + P LVV +TR  L   A+ +  + P  ++++TG+SGK+SV    
Sbjct: 59  AAGAGALLVSQRLALDAPQLVVADTRLALGQLAAWVRQQVPARVVSLTGSSGKTSVKEMT 118

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I    G   +  G  +               P+ L              + + A+  G
Sbjct: 119 AAILSECGEVLYTAGNFN----------NDIGVPLTLL---RLQPQHDFAVIELGANHIG 165

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              +     +  A    NL   H++   +      AK  +F  L       I   ++ + 
Sbjct: 166 EIAYTSALARPQAALINNLAAAHLEGFGSLAGVAQAKGEIFTGLPTDGVAIINADNNDWP 225

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                               G      +V    N  Q  +       + + PLPG   V 
Sbjct: 226 HWQSMLDGKTVWCFSPQATAGVEFFASEVRGDGNGTQFQLHSPFGSAEIVLPLPGRHNVA 285

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL AA L +++G     V + L +L  VPGR   +   +    +   Y     S+    
Sbjct: 286 NALAAAALAMSVGASLKAVRQGLSQLQAVPGRMFPIVLAANKLLLDDSYNANVGSMTTAA 345

Query: 374 KNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI----------VTDDN- 419
           + +  +   R++VV      G   Q     +G+ A     D  I          V   N 
Sbjct: 346 QVLAEMPGYRVMVVGDMDELGAEAQECHRQVGEAARRAGIDKVISVGGLSRVLSVASGNG 405

Query: 420 PRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNK 458
              +D   + A +   +        + KG+R  A+   +  L +
Sbjct: 406 EHYQDKAAVIARVAELLAEHEVMTVLIKGSRRAAMEQVVCALQE 449


>gi|225848044|ref|YP_002728207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643233|gb|ACN98283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 433

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/450 (14%), Positives = 154/450 (34%), Gaps = 54/450 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L DL      +++N          + ++   + DSR      +F+ + G   DGH +I
Sbjct: 1   MRLTDLAKVVEGKILNIE-------EDLEVKSFTIDSRSSTQDSVFIPLKG-NTDGHSYI 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+ + +   +     + ++           ++V +T + L   A     K  + ++ +
Sbjct: 53  EDALKKWSVGYLTEKPLNFKNG----------ILVKDTYQALKKIA-IYKRKSIDTVVGI 101

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+SGK+S    +  +      +    G                  P+ LA   +   + 
Sbjct: 102 TGSSGKTSTKELLNFVLSNFYKTYATSGN----------YNNEIGVPLTLA---NTPENT 148

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + + A   G                 N+    I    +       K   FE ++  
Sbjct: 149 HIAIIEMGAGKVG-----------DIDYLNNIVNPDIGVLVSVGHAHVEKFGSFENIIKG 197

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +      +        +   +    +      +   I +  +  I       ++ + +  
Sbjct: 198 KGEIFNTSHYHVLPFDLLNYYKDKLKKFITFGEEGNIKVYDIKIIPEGTTGKVAYKNQVL 257

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+  +    N    AG+   +G+D    L+ L++ + + GR + +   +    I  
Sbjct: 258 DLTIPIFNKGIFKNIGAVAGVLYHLGLDPIESLKVLKEFNQIQGRGKIIKIGNL-TIIDD 316

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S++  ++ +  I + +++V+      G + ++  R I  +I     D   +  
Sbjct: 317 SYNANPLSVKNAIETLNEIPTVKVLVLGDMLELGEESEKLHRSIAKEILKSHIDYVFL-- 374

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
                E+ + I+ E+      ++   ++ E
Sbjct: 375 ---YGEETKYIKQELEG--KKYVLHTDKKE 399


>gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17570]
          Length = 457

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 154/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D   ++ +                G+   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADPIVEDYLPIDKKVV-------RFGQGAELEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Treponema denticola F0402]
          Length = 430

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 151/429 (35%), Gaps = 40/429 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L+      L+ + S             V  DSR+++   +F+ + G  +DGH++I
Sbjct: 15  MTLDELLTSTGAWLVYESSSSKAFSS------VVMDSRNVKNNSLFIPLRGENQDGHVYI 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRS----NTPILVVDNTRKFLSLFASRLYGKHPE- 115
             A+  GA+  VV   Y  ++ +A +      +   + V N  K L   A     K P  
Sbjct: 69  EPALKNGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNL 128

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TG+SGK++    +  I  +   +    G  ++           T  P+ + +   
Sbjct: 129 YKIGITGSSGKTTTKEILASIYSKKYNTVSTKGNLNSE----------TGLPLSVFEVRP 178

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +  +  G        +   A   TN+G  HI    T+QA    K  +F 
Sbjct: 179 E---HEAGIFELGMNRKGEIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFS 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   A+ +  +    + +K         +S         ++    + +       +
Sbjct: 236 FFKDD---ALGFIPECEFTDFLKDVPRGSVFTVSDNDSSLVQKVEDAGVLGS------KI 286

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +  + LFPLPG + V NAL+   L    G  +  +   LE +  + GR + +      
Sbjct: 287 FYRGEEILFPLPGVYNVKNALLCIALAEKKGFSAKEIKSGLEAVRPLFGRSQVLHGFVTY 346

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVV---FGCGGDRDQGKRPIMGKIALDLA 410
                 Y    +S++  ++   +I     +  V+      G   D   + I+       A
Sbjct: 347 FLDC--YNANPDSMKSAIEFCDSINTECAKHYVLASMLELGAKSDYEHKKIIEDALKSNA 404

Query: 411 DIAIVTDDN 419
           D      D+
Sbjct: 405 DNLYFFGDD 413


>gi|220912335|ref|YP_002487644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859213|gb|ACL39555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 488

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 143/479 (29%), Gaps = 45/479 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+ +                V +DSR    G ++VA  G   DGH FI  A  
Sbjct: 1   MIAFTAAEIADITKGRLDADPGITPTSVVTDSREATPGSLYVAKPGEHADGHDFIAAAFE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK---------HPEN 116
            GA   +V    +  D S+      P ++V++    +   A+    +             
Sbjct: 61  SGAVLALVERPAARPDGSSY-----PSVLVEDAVLAMGALAAEAVRRIRAARAAAVQELT 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++    +  +    G +    G      +      LT             
Sbjct: 116 VVGITGSAGKTTTKDLLAGLFASQGSTVAPKGS----YNGEVGVPLTVFQADE------- 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + + A+  G  ++  D +K   G    +G  H            A      E
Sbjct: 165 --GTRYLVIEMGATGIGHIRYLADMVKPDIGVVLAVGTAHAGEFGGVDNIALA-KGEMVE 221

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN---KQQVTI 293
            L  +  AII  DD     +  R         + G  G  +         +   +  + +
Sbjct: 222 GLSADGTAIINLDDDRVAAMRSRTTATVLGFSAEGRGGAAVQALSADTNEHGNPEFDLQL 281

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVVPGRFEFVGTN 352
                       L G     N L AA    A G+  A +     ++      R E     
Sbjct: 282 PGSDGPQHVASKLIGAHHTGNLLAAAAAAFAAGMSGADIAAGLSKQSAASRWRMERTERA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALD 408
                I   Y     S+   L+ +  +  GR    V G     GD    +   +G   + 
Sbjct: 342 DGVTVINDAYNANPESMRAALRTLADLGRGRRTWAVLGAMLELGDDSIREHTAVGTQVVR 401

Query: 409 L--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           L  + + +V       E      + +  G      +   N  EA       L   D+++
Sbjct: 402 LNISRLVVV-----GREARALYVSAVQEGSWGDECLFAENPDEAYELLNAELEPGDLVL 455


>gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
 gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
          Length = 474

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 86/483 (17%), Positives = 156/483 (32%), Gaps = 54/483 (11%)

Query: 6   LIYKDFPELIN-QLSIFPMQWRERKIN-EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+ +           + +++  V  DSR   AG +FVA+ G   DGH ++  A
Sbjct: 1   MIEMTADEIASVTSGTVVAGDPQARVSEGVVIDSREATAGSLFVALPGEHVDGHAYVRVA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH------PENI 117
              GA   +V+              +   ++VD+ ++ L   A  +  +       P  +
Sbjct: 61  HENGATTSLVTR-------LVPDAGDGAQVLVDDAQRALGDLARHVLARRREVADEPPVV 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG+ GK+S    + ++    G+     G  +                          
Sbjct: 114 VGITGSVGKTSTKDLLAEVLAPLGVVHAPPGSLNNELGLPLTVLRAPQDA---------- 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V    + A + G   +              +GR H+    +  A   A        
Sbjct: 164 ---RVVVAEMGADAPGNLTYLTSIAPPDVAVVLTVGRAHLAGFGSVDAVA-ATKSELVSG 219

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SV 295
           L     A++ ADD     + + A                +  + V      +   +  + 
Sbjct: 220 LAPGGFAVLNADDERVAAMARLAPRVVTFGSGDAVPPPSVGARDVTLDAAGRAAFVLTTP 279

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSR 354
           +G++      L GE  V NAL AA + + +GI +A V   L       P R   V     
Sbjct: 280 DGEEVPVTLALVGEHHVTNALAAAAVGLGLGIAAADVAGALANAGARSPHRMHVVERPDG 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409
              +   Y     S+   LK +  I     R + V G     GD  + +   +G++A+ L
Sbjct: 340 VTVVDDAYNANPESVRAALKALVAIAGRERRSVAVLGEMLELGDSSRDEHDAVGRVAVRL 399

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDV 461
             D  +V  +  R          +  G           +   +   A       L   DV
Sbjct: 400 NVDKLVVVGEGAR---------AMHTGASHEGSWGDEALFAPDLDAARAYLATELRPGDV 450

Query: 462 LVV 464
           ++V
Sbjct: 451 VLV 453


>gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae
           TIGR4]
 gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 457

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 77/482 (15%), Positives = 160/482 (33%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I   +N    +  ++ +++             ++    + ++   E L   D +++  
Sbjct: 382 TVIFYGENIA--ELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILL-- 437

Query: 467 KG 468
           KG
Sbjct: 438 KG 439


>gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 452

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 161/434 (37%), Gaps = 32/434 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L++ L    +   +  I  VS+D+R I++G +FVA+VG + D H F  QA +
Sbjct: 1   MITLMLSQLVDVLDAQLIGD-DTAIESVSTDTRTIESGSLFVALVGERFDAHDFAGQAAS 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A++VS A  +Q          P L+V++T+  L      ++       +A+TG+ G
Sbjct: 60  AGASALLVSKAVDVQ---------VPQLLVEDTKVALGKLGQFVHQVCQTPTVAITGSCG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V   V  I  + G   +  G  +           + P                   +
Sbjct: 111 KTTVKEMVASIMTQKGQVLYTAGNFNNDIGVPLTLLRSQPE-------------DDFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+  G   +    +        N+   H++   +      A      + L   S AI
Sbjct: 158 ELGANHVGEIAYTTQLVNPDVAMVNNVAAAHLEGFGSMDGVKRA-KGEIYQGLKPGSVAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLF 304
           +  D    +   +   +   +  S+         + V    + +   TI      FD   
Sbjct: 217 VNLDSNGGEHWREVLSDKTVKTFSLSDNSAEYKARNVTMNVNGEASFTIQTPETSFDVKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  V NAL A  L + +G  + ++   L  L  V GR E V        I   Y  
Sbjct: 277 GIIGQHNVSNALAATALSLELGATTEMIASGLANLSKVKGRVETVDLTDSIRLIDDSYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           +  +++     + +    R +V+      G+        +G+ A       ++T      
Sbjct: 337 SVPAMKAAADLLNSFDGVRWLVLGNMAELGEESLALHRQVGEHAAPFKFEHVLT----FG 392

Query: 423 EDPEKIRAEIIHGI 436
            D + I +++  G+
Sbjct: 393 ADTKAI-SDVCQGM 405


>gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 460

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 158/457 (34%), Gaps = 43/457 (9%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  ++  V +DSR   +G ++VA VG   DGH FI  AIA GA   +V++        
Sbjct: 18  GADVVVSGSVETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVCAIVTN-------P 70

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQR 139
           +        ++V++    L L A     +        I+ +TG+ GK++       I  +
Sbjct: 71  SIGNPEHTRILVEDATYALGLLAKVHIERLRATGDLRIVGITGSVGKTTTKDLTAGILAK 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +   +   +          LT               +     + + AS  G  ++  
Sbjct: 131 FAPTVAPVASFN----NEVGMPLTALKADE---------NTRYLVLEMGASGIGHLEYLT 177

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G   ++GR H+    +      AK  L E  + +    I+  DD     +   
Sbjct: 178 GLVSPDLGVELSVGRAHLGGFGSVAGLARAKAELVEG-VKENGLVILNLDDPNVAAMETV 236

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           AH       ++G +   I+ + V               G+       L G  QV NAL A
Sbjct: 237 AHTPVVYFSALGNEKADIYARNVTLDEFSHASFEAVTTGEVIPVHLGLVGAHQVNNALAA 296

Query: 319 AGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM--ILKN 375
             +C   G++   +V          P R   V  +     I   Y    +S++    +  
Sbjct: 297 ISICQGFGLELPEIVAALNGMKAASPHRMSIV-ESRGATFIDDSYNANPDSMKAGLAVLA 355

Query: 376 IRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAE 431
            +   + + I V G     G+        +G+ +     D+ I        E  ++I   
Sbjct: 356 KQGEHANQRIAVLGEMMELGETSAQLHQEVGEMVVATQVDLLI-----TLGEGAKEIAVP 410

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +      F   G+  EA++   E +   DV+ +  KG
Sbjct: 411 LTEKTTHFH-AGSVAEAVKLLEEKVVAGDVVFL--KG 444


>gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
 gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
          Length = 461

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 131/412 (31%), Gaps = 40/412 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     ++   +        +  ++  +  DSR    G +FVA+VG   DGH +     
Sbjct: 1   MLEMTLGKIAKVVGGTVAGDPDIVVDAPAYVDSRQAVPGGLFVAVVGEHVDGHDY----- 55

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA A++ S                P +VV +    L   A+ +  +    +LAVTG+ 
Sbjct: 56  AAGAHAVLGSRPTEA-----------PTIVVRDPIPALGKLAAYVVRRLDATVLAVTGSQ 104

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+    ++ +I   +G +    G  +             P                   
Sbjct: 105 GKTGTKDYLARILSAAGSTVATSGSFNNELGLPLTVLRAHPE-------------TRYLV 151

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A   G  +H  +       +  N+G  HI    ++ +   A        L  E  A
Sbjct: 152 LEMGARRIGHIKHLCEIAPPDVAAVLNVGTAHIGEFGSRDSIAFA-KGEIVAALQPEGTA 210

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ A D    E+  R                            +    I  + + +    
Sbjct: 211 VLNAGDPLVAEMTSRTRARVLTWGP--DDADVSERGSEVDDLGRPSFEIGYDDEWYPVRL 268

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYA 363
              G  Q  NAL AA + +A+GI  A +   L       P R E          +   Y 
Sbjct: 269 QQSGLHQAQNALAAATMALAVGIPLADIAAGLSAATASSPMRMEVHERADGLIVVNDAYN 328

Query: 364 HTSNSLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409
               S+   L+++  I      R + V G     G         +G+ A  L
Sbjct: 329 ANPASVVAALESLAVIGRRRHRRTVAVLGEMLELGRESFDGHVRVGRAAARL 380


>gi|332877391|ref|ZP_08445139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684774|gb|EGJ57623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 432

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 117/365 (32%), Gaps = 30/365 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR    G +F A+ GN  +G+ F  QA+ QG    +V  A            +   
Sbjct: 16  VTTDSRKCPQGALFFALKGNSFNGNAFAAQALEQGCAYAIVDEAEYAAGG------DERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++    L   A     +    ++ VTGT+GK++       +  +     +  G  + 
Sbjct: 70  ILVEDVLTALQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTAAVLSKKHNVLYTQGNLNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI----KLIAGS 208
                +     +P                  H      +       +  +        G 
Sbjct: 130 HIGVPKTLLELSPD-----------------HTIAVIETGANHLGEIKALAEIVDPDFGL 172

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H++   + +     K  L++ L  K     I  D    K +    H       
Sbjct: 173 ITNVGMAHLEGFGSFEGVVRTKGELYDYLRAKHGTVFIDHDSEDLKRIAGGVHQICYGSP 232

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                     + +       +      E ++      L G + + N L AA +    G++
Sbjct: 233 CDEVLSVEGEVLECAPFLKFRWRPAGGEWQEV--QTGLIGAYNMQNMLAAATIGRTFGVE 290

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   L        R + +        +   Y     S+   ++N R +   R +V+ 
Sbjct: 291 VDSINRALAAYEPKNNRSQLM-ETDDNKLLVDAYNANPTSMRAAIENFRDMKVERRMVIL 349

Query: 389 GCGGD 393
           G  G+
Sbjct: 350 GDMGE 354


>gi|256838742|ref|ZP_05544252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
 gi|256739661|gb|EEU52985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
          Length = 427

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 138/399 (34%), Gaps = 33/399 (8%)

Query: 27  ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +  I+   +++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +         
Sbjct: 8   DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYYIGERT 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   ++VDN  K L   A          I+ +TGT+GK++    +  +        
Sbjct: 68  --------ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLL 119

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +            T                 +  + + AS  G  +  +D +  
Sbjct: 120 YTEGNFNNHIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIVHP 166

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+GR H++   + +     K  L++ +   +    I  ++ Y + + K     G
Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----G 221

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              ++ G         +V +           +GK       + G + + N L A  +   
Sbjct: 222 IEQITYGNGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRF 281

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             I +  +   +        R +F  T      I   Y    +S+++ L N  T+     
Sbjct: 282 FKIPAERISRAIAAYEPTNNRSQFKKTE-NNELIIDAYNANPSSMKVALDNFITMPVQPK 340

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419
            ++ G   +       +  ++   +     D   +  ++
Sbjct: 341 AIILGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379


>gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
          Length = 464

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/443 (17%), Positives = 139/443 (31%), Gaps = 40/443 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--T 90
           V+ DSR +  G +FVA+ G + DGH F            + ++A +    + T R +   
Sbjct: 29  VTVDSRAVAPGDLFVAVPGERVDGHDF------------LTAAAAAGAVAALTTRPDGAL 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           P +VVD     L   A+ ++ +        + +TG+SGK+S    + Q+   +G +    
Sbjct: 77  PCVVVDEPVAALGRLAAAVHTRLAGGDLVTIGITGSSGKTSTKDLLGQVLATAGATVSPP 136

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGI-KLI 205
           G      +      LT                     + +E  S G     RL  + +  
Sbjct: 137 GS----YNNDIGLPLTVLDADE-----------DTRFLVLEMGSRGRGHIARLCRVARPD 181

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G   N+G  H+    +      AK  L E  LP E  A++ ADD     +  R      
Sbjct: 182 VGVVLNVGSAHLGEFGSADGIAVAKGELVEA-LPAEGTAVLNADDPRVIGMAPRTRARVV 240

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                           +          ++   +    L  +           A     A 
Sbjct: 241 TTGRSAGADVRAEDVALDEAGRAGFTLVAGGERAAVRLQVVGEHQVANALSAAGAALAAG 300

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
               A+             R E    +     +   Y     S+   L  +  + + R +
Sbjct: 301 MAPDAVAAALSAAEPRSRWRMEVTRRDDGVTVVNDAYNANPESMRAALAALAGLPARRRV 360

Query: 386 VVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            V G     G     +   +G+       D+ +    +        + A    G  G + 
Sbjct: 361 AVLGAMAELGPGAADEHERLGRDAVAAGVDLVVAVGPDAVGIADGALAAGAREG-EGAVR 419

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464
             +R  A     E+L   DV++V
Sbjct: 420 VPDRAAARELLTEVLVPGDVVLV 442


>gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
          Length = 478

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 129/398 (32%), Gaps = 31/398 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S DSR I  G  + AI G+  DGH F+  A+  G    V+      Q   A    +
Sbjct: 27  INGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAALKNGGGLAVI-----AQSQRAKFSGD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVV +    L   A     +    I+AVTG+ GK+S    ++ + Q  G +      
Sbjct: 82  LPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTSTKEALRTVLQAQGATHVSAAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                                   +  +  G  +  +  ++      
Sbjct: 142 FNNHWGVPLSLARCPQDA-------------KFAVFEIGMNHAGEIEPLVKLVRPHVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+++    +A  +AK  +F   L     AI+  D++    + +RA   G   + 
Sbjct: 189 TTVEPVHLEFFSGIEAIADAKAEIFTG-LEPGGAAILNRDNSQFARLAERAKACGVARIV 247

Query: 270 VGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              + +    +   V        V   V   D  +   + G     N+L        +G 
Sbjct: 248 TFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLAASTLVGG 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI---TS 381
           D AL    L       GR         GG   +    Y     S+   +  +  +     
Sbjct: 308 DLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLGRVAIGPQ 367

Query: 382 GRIIVVFGCGGDRDQGKRPIM----GKIALDLADIAIV 415
           GR I V G   +     R +       I  +  D+   
Sbjct: 368 GRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLVFC 405


>gi|301307831|ref|ZP_07213787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
 gi|300834174|gb|EFK64788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
          Length = 427

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 138/399 (34%), Gaps = 33/399 (8%)

Query: 27  ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +  I+   +++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +         
Sbjct: 8   DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYYIGERT 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   ++VDN  K L   A          I+ +TGT+GK++    +  +        
Sbjct: 68  --------ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLL 119

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +            T                 +  + + AS  G  +  +D +  
Sbjct: 120 YTEGNFNNHIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIVHP 166

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+GR H++   + +     K  L++ +   +    I  ++ Y + + K     G
Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----G 221

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              ++ G         +V +           +GK       + G + + N L A  +   
Sbjct: 222 IEQITYGNGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRF 281

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             I +  +   +        R +F  T      I   Y    +S+++ L N  T+     
Sbjct: 282 FKIPAERISRAIAAYEPTNNRSQFKKTE-NNELIIDAYNANPSSMKVALDNFITMPVQPK 340

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419
            ++ G   +       +  ++   +     D   +  ++
Sbjct: 341 AIILGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379


>gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK150]
          Length = 456

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 154/484 (31%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   L       Q+    +     DSR I+ G +FV + G + DGH 
Sbjct: 1   MKL------YLYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A  QGA A +     +              ++VD+        A     K   ++L
Sbjct: 54  FIATAFTQGAAATLSERPVAEGA----------YILVDDVLTAFQRLAKYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKNSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+  A + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEAAIAQAFSELKLTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPTDQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus influenzae 10810]
          Length = 457

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 159/466 (34%), Gaps = 31/466 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L   L    +     ++ E+++D+R   +  +F A+ G K D H ++ QA+A
Sbjct: 1   MIKLSTVQLAQILQAKLIGDENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQAVA 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q         A ++         + P LVV +TR  L   A  L  K     +A+TG+SG
Sbjct: 61  Q--------GAVAVVVQQENSSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V      I Q +   S  +  T+   +      LT                     +
Sbjct: 113 KTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAVI 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+      +    ++  A    N+   H++   +      AK  ++  L        
Sbjct: 164 ELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK-----N 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A        +              + GK   +K V         T+     + D   P
Sbjct: 219 GVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLP 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y   
Sbjct: 279 YLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNAN 338

Query: 366 SNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +SL   +  +++  +  I+ V      G+        +G+    L ++ +V        
Sbjct: 339 KDSLCAAIDVLKSYDAFLILCVADMKELGENSLAIHREVGQYVN-LVNLDLVCS---YGN 394

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 395 ESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 438


>gi|116670127|ref|YP_831060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
 gi|116610236|gb|ABK02960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
          Length = 491

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/476 (13%), Positives = 131/476 (27%), Gaps = 36/476 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+                + V +DSR    G ++VA  G   DGH FI  A  
Sbjct: 1   MIAFTAAEIAEITDGRLAADPTITPSAVVTDSREATEGSLYVAKPGESADGHDFIGAAFE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---------N 116
           +GA   +V         +       P +VV +    +   A+    +             
Sbjct: 61  RGAVLALVEREGPDGAGAPY-----PAIVVKDAVLAMGALAAESVRRIRARRAAEGTEFT 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALS 175
           ++ +TG++GK++    +  I    G +    G     +       +    +   + +  +
Sbjct: 116 VIGITGSAGKTTTKDLLAGILSAEGNTVSPQGSYNGEVGVPLTVFQAGFDTRYLVIEMGA 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +   S G+            G   N+     +  +       A + L +
Sbjct: 176 TGIGHIRYLADMVRPSIGVVLGIGTAHAGEFGGVDNIAVAKGELLEALPDSGTAVINLDD 235

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +   +         +S +       A  R + V          ++      +   +  
Sbjct: 236 GRVAAMTSRTTANVLGFSAQPADDVPGAALRAVHVETNPAGNPEFELFFPGEAEGHQVRS 295

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                  +  L        A    G  IA  + +               R E        
Sbjct: 296 RLIGAHHVTNLLAAAGAAYAAGVTGERIAASLSTQTA--------ASRWRMERTERPDGV 347

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-- 409
             I   Y     S+   L+ +  +  GR    V G     GD    +   +G   + L  
Sbjct: 348 TIINDAYNANPESMRAALRTLADLGRGRRTWAVLGAMLELGDESIREHMAVGTQVVRLNI 407

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + + +V       E      + +  G      +   +  EA       L   D+++
Sbjct: 408 SRLVVV-----GREARSLYVSAVNEGSWGDECVFTESADEAYDLLQRELEPGDLVL 458


>gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
          Length = 818

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 136/372 (36%), Gaps = 24/372 (6%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           I Q     +Q+ E +I  +  DSR I      +F AI G   DGH F+  A   G  + V
Sbjct: 10  ILQAKSPNLQFYEAQIEHLLLDSRQIIFAERSLFFAIKGTHHDGHQFLSAAYQAGVRSFV 69

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V+    L  F          L+V+N  + L   A+    + P  ++ +TG++GK++V  +
Sbjct: 70  VTKVPELSQFPEAN-----FLLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKTTVKEW 124

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + Q+                 S  + ++++  P  +         +   +       S  
Sbjct: 125 LFQLLYPHYAI--------IRSPRSFNSQIGVPLSV-----WGIQAQHELGIFEAGISRK 171

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +  + I+   G FT LG  H +   ++      K+ LF     +    I   DDA 
Sbjct: 172 GEMGNLANIIQAKIGIFTMLGEAHNEGFSSKAEKLREKLLLFA----EVDLLIYRRDDAT 227

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               +K             +    +++ K     N   +    +  +     P      +
Sbjct: 228 VHRAIKDLGRKTLAWSLDQHPNADLYVFKTETFLNHTHLEGRYQSSEQRIALPFTDHASI 287

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+    + + +G+ S  + E + +L  V  R E +   +    I   Y    +SL + 
Sbjct: 288 ENAIHCWAVLLHLGLKSEEIAERMAQLEPVAMRMELLDGRNNCLIINDTYNADLSSLRLG 347

Query: 373 LKNIRTITSGRI 384
           L+ +R    GR 
Sbjct: 348 LQWMRQHEHGRN 359


>gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
 gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV200]
 gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
          Length = 457

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/482 (15%), Positives = 162/482 (33%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+     +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I   +N    +  ++ +++             ++    + ++   E L   D +++  
Sbjct: 382 TVIFYGENIA--ELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILL-- 437

Query: 467 KG 468
           KG
Sbjct: 438 KG 439


>gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Xanthobacter autotrophicus Py2]
 gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Xanthobacter autotrophicus Py2]
          Length = 493

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 134/399 (33%), Gaps = 29/399 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  +S DSR +  G  F AI G   DGH ++ +A+  GA   VV+      D +    
Sbjct: 41  HDVTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGAGAALCVVAR-----DRADGFP 95

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++ P+LVVD+    L+  A     +    I+AVTG+ GK++    ++      G +    
Sbjct: 96  ADAPLLVVDDVLAALTDVARAARARSKAQIVAVTGSVGKTTTKEALRIALGADGETHASA 155

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ LA+              +  +  G     +  ++    
Sbjct: 156 ASYNNHWGV----------PLSLARFPREAR---YGVFEIGMNHPGEITPLVRLVRPHVA 202

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   HI    + +   +AK  +F+ + P  +  +   +  + +     A     R+
Sbjct: 203 IVTTVEPVHIAQFSSIEEIADAKAEIFDGVEPGGAAVLNLDNPLFDRLKAAAAARGISRI 262

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +S G         K  A+ +   V ++        F   +PG   V N L         G
Sbjct: 263 VSFGSGEGADVRLKDAALKSYCSVAVADVMGTPVTFKVGMPGRHIVQNMLAVLAAAKLAG 322

Query: 327 IDSALVLEHLEKLHVVPGR---FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---T 380
            D AL    L  L   PGR    +      +   +   Y     S+   L  +       
Sbjct: 323 ADMALAALALSHLKPPPGRGVPLQLQLKGGQATLLDESYNANPASMRAALDVLSRTPVGP 382

Query: 381 SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415
            GR I V G     G   +     + + I     D    
Sbjct: 383 RGRRIAVLGDMLELGPDGEAHHAGLAEAIVAAKIDQVYC 421


>gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 457

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/489 (15%), Positives = 152/489 (31%), Gaps = 71/489 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI------NEVSSDSRHIQAGWIFVAIVGNKE 54
           MKL           I++++       +  I       +   DSR I  G +FV + G + 
Sbjct: 1   MKLT----------IHEVAQAVGAKNDVSIFEGTQLEKAEFDSRLIATGDLFVPLKGAR- 49

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DGH FI  A   GA A +     +          N P ++VD+        A+    K  
Sbjct: 50  DGHDFIETAFENGAVATLSEKEIA----------NHPYILVDDVLTAFQTLAAYYLEKTA 99

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            ++ AVTG++GK++    +  +   +  +    G  +                  L    
Sbjct: 100 VDVFAVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEETEKL---- 155

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E     L    L        +              +     A+ ++ 
Sbjct: 156 -----------VLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAQGKMQ 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     ++   D   +  +                G+   L+    +  K  +T  
Sbjct: 205 IADGMAPGSLLLAPADPIVEAYLPADKKVV-------RFGQGAELEITDLVERKDSLTFK 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
               +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    + 
Sbjct: 258 ANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQDLELTRNRTEWKKAANG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIAL 407
              +   Y     ++++IL+    I     G+ I V       GD+       M   ++ 
Sbjct: 318 ADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSP 377

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQ 459
           D+ DI I        ED  ++                    ++    + ++   E L   
Sbjct: 378 DVLDIVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAY 432

Query: 460 DVLVVAGKG 468
           D +++  KG
Sbjct: 433 DQILL--KG 439


>gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
 gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
          Length = 456

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 157/451 (34%), Gaps = 42/451 (9%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+ VS+D+R I  G +F+A+ G   D H F+         AI   +   +    +
Sbjct: 18  GADVSIDGVSTDTRAITEGQLFIALAGENFDAHDFLA-------PAIAAGATALMVADES 70

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + +  P +VVD+TR  L   A+    K    ++AVTG++GK++    V  I + +  ++
Sbjct: 71  KVPTGVPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKTTTKEMVAAILKAAFGAA 130

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                         +       P+ L    +         + +  +  G   +       
Sbjct: 131 VLST--------RGNLNNDIGLPLTLLGLRASHR---AAVIEMGMNHPGEIGYLAPIGAP 179

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN  R H++           K  +F   LP    A+I ADDAY+     R    G
Sbjct: 180 TVALITNAQRAHLEGMGDLDEVAREKGSIFLG-LPANGVAVINADDAYAGLW--RGMAGG 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             V + G         KV     +  + +S    D   +  +PG     NA+ AA  C+A
Sbjct: 237 RPVRTFGIDNAADVSAKVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVAAAAACLA 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GI    V+  LE    V GR +          +   Y    +S+   +  +   T GR 
Sbjct: 297 AGIPMVAVIAGLEAFSGVKGRLQRRTGKQGAEILDDTYNANPDSVRAGIDVLAA-TIGRK 355

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN-----PRSEDPEKIRAEIIHGIP 437
           ++V G  G         +G+ +    D                  E  ++       G  
Sbjct: 356 LLVLGDMG--------EIGEASGQYHDEIGGYAKSQGIDRLFALGEAAQQAVRNFGEGAK 407

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +      I A+      L  +  ++V  KG
Sbjct: 408 HYCNVDKLIAAVDK---ELGPETTVLV--KG 433


>gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 511

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 150/477 (31%), Gaps = 62/477 (12%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+  I    +  +   + ++   V  DSR + +G +FVA+ G + DGH +   
Sbjct: 1   MIALSLAEIAEITGGRLDSVDEPDTQVTGFVEFDSRKVTSGSLFVALPGARVDGHDYATT 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNT------PILVVDN---------------TRKF 101
           AI +GA A++ +    +                   +  ++                R  
Sbjct: 61  AIDKGAVAVLAARPVGVPAIVVEPHGRVEGDGANADIYANDEDGSAAAVVAALSAIARAV 120

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
               A+    +    I+ VTG++GK+S    +  I +  G +    G          +N 
Sbjct: 121 TQRLAA----EQNLTIVGVTGSAGKTSTKDLIATIFREVGETVAPPGS--------FNNE 168

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +  P       AL            + A   G  +H  +      G   N+G  H+    
Sbjct: 169 IGLP-----YTALRCDEHTRYLVAEMSARGIGHIRHLTEITAPRVGVVLNVGTAHLGEFG 223

Query: 222 TQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVM----KRAHNAGCRVLSVGYQGK 275
           +++    A  ++            A++ ADD +   +      +           G    
Sbjct: 224 SRENIAQAKGELVEALPNAEAGGVAVLNADDPFVAAMAPRTEAKVVYYSTENRRGGAPAA 283

Query: 276 FIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             +   +             S + +       + G  QV NAL AA   I +G+ +  V 
Sbjct: 284 QYYATDIVLDDVARPSFTLHSPDAEPVAVKLQVFGSHQVSNALAAAAAAIELGVSADTVA 343

Query: 334 EHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVF 388
             L         R +          I   Y    +S+   +  +    + R     I V 
Sbjct: 344 AALSGHRLASEHRMDVRTRRDGVTIIDDSYNANPDSMRAAIAALAYTAAARPDARSIAVL 403

Query: 389 GCGG----DRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           G  G    D +Q  R  +G+       +  I   +NP      +  A+   GI   +
Sbjct: 404 GEMGELGSDAEQSHR-QLGEFLAKYHVEHLIAVGENPNCRAMAEAAAQ--QGINTVV 457


>gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
 gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
          Length = 490

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 160/472 (33%), Gaps = 43/472 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++  KD  E  +           + I E S DSR      IFV I+G + D H FI  A+
Sbjct: 26  NITIKDIVEACSG--QLLCGDENKVIKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGAL 83

Query: 65  A-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA         S  D       N P + V +T + +    +    +    ++AVTG+
Sbjct: 84  KINGATF------TSEHDEPLEGFENKPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGS 137

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    +  +          IG  ++              P+ L           + 
Sbjct: 138 VGKTTTREMISTVLASQKKVFQTIGNQNSQ----------IGVPLTL---SHLTREDEIA 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  S  G  +   + I+      T +G  HI   +TQ+           + LP++  
Sbjct: 185 VLEIGMSERGQIEKLTNMIRPNVAVVTMIGVSHIAQLKTQENICLE-KMDIVKGLPEDGM 243

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFD 301
             +  DD +      +  +                   V                 KD +
Sbjct: 244 VFLNGDDKFLAPYRGKLSHKTFFYGMDKACDYRAENVHVKDGQTIFHFFYKEGKVVKDME 303

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
            +    GE  V NALVA G+   +G+D     + L   H      + + T      I   
Sbjct: 304 VVLGTMGEHNVRNALVALGVAHQMGLDMKAAAKALVTFHGQR---QQMHTLKSCTLIDDT 360

Query: 362 YAHTSNSLEMILKNIRTIT--SGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415
           Y  + +S++  +  + ++    GR I         G++++     +GK IA    D    
Sbjct: 361 YNASPDSMKASVSVLSSMEGVKGRRIAALADMLELGEKEREYHYEVGKFIAGTQVDEV-- 418

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIR-TAIEMLNKQDVLVV 464
                  E  E+I   +       + K   +R +A++   +  ++  DVL++
Sbjct: 419 ---AAYGELSEEILKGVEDNNERIVVKHFESR-DALKDYLLTYVHPDDVLLL 466


>gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
          Length = 465

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 164/477 (34%), Gaps = 34/477 (7%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
                    +  +  I+ ++ DSR ++ G ++V ++G   DGH F  Q++A GA   +  
Sbjct: 2   CGGTLANEQRDSQIAISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWE 61

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
               + D  A      P+++V +T   L   AS    +    I+ +TG++GK++      
Sbjct: 62  EGCPVPDELAEA----PLVLVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDL-- 115

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
                   ++  +G    +   A +       P+ + +      +     + +  S  G 
Sbjct: 116 --------TAAVLGTIYRVHKTAGNLNNHIGVPLTILQ---LDETIETAVLEMGMSDFGE 164

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            +         A   TN+G  H+    ++     AK+ +   LLP  +      +    +
Sbjct: 165 IELLSTIASPDAAIITNVGDAHMLQLGSRAGIAEAKLEIVAGLLPGGALVFNGDEPLLRE 224

Query: 255 EVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE-------GKDFDFLFPL 306
            + +     G  ++  G           V    +     +           +      P+
Sbjct: 225 RLAQIELPEGTELVPFGAAADCQWSASNVQIGSDASAFDVVSPLLSAEEAEQLRGITLPV 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  +    G+ +A + + L  + +   R + V   +    +   Y    
Sbjct: 285 PGAHNVMNALAAIAVAYRFGVPAAQIRDGLATVTMTGMRIQPVDAFNGAKILNDAYNANP 344

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            ++   +  +  +T   R  VV       G  +      +G         A++T   P +
Sbjct: 345 TAVRAAVDLVAELTGYRRKWVVLADMLELGPEEADLHRGIGAYVTPEKADAVLTW-GPLA 403

Query: 423 E---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
           +   D   +  E            ++ +      E L+  D+++V G +G     +V
Sbjct: 404 QYIADGAAVAFEAAGRADDVRHFEDKEQLTAWLREQLHADDLVLVKGSRGMRMEQVV 460


>gi|255012790|ref|ZP_05284916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. 2_1_7]
 gi|262382745|ref|ZP_06075882.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298374305|ref|ZP_06984263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
 gi|262295623|gb|EEY83554.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298268673|gb|EFI10328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
          Length = 427

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 139/399 (34%), Gaps = 33/399 (8%)

Query: 27  ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +  I+   +++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +         
Sbjct: 8   DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYYIGERT 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   ++VDN  K L   A          I+ +TGT+GK++    +  +        
Sbjct: 68  --------ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLL 119

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +            T                 +  + + AS  G  +  +D +  
Sbjct: 120 YTEGNFNNHIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIVHP 166

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+GR H++   + +     K  L++ +   +    I  ++ Y + + K     G
Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----G 221

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              ++ G         +V +           +GK       + G + + N L A  +   
Sbjct: 222 IEQITYGNGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRF 281

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             I +  +   +        R +F  T+     I   Y    +S+++ L N  T+     
Sbjct: 282 FKIPAERISRAIAAYEPTNNRSQFKKTD-NNELIIDAYNANPSSMKVALDNFITMPVQPK 340

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419
            ++ G   +       +  ++   +     D   +  ++
Sbjct: 341 AIILGDMRELGPTSDELHAEVVEQIKKGQFDKVFLCGEH 379


>gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
 gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
          Length = 457

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 156/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLTPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +       +  +I L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
 gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
          Length = 492

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 84/451 (18%), Positives = 157/451 (34%), Gaps = 42/451 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR ++ G +FVA+ G   DGH ++             ++A  +      +    
Sbjct: 36  TGVSIDSRTLRPGDLFVALKGPNFDGHDYVGD------ALAHGAAAALVSRLPGNVPPEA 89

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+T   L              ++AVTG+ GK+     ++      G +    G  
Sbjct: 90  PVLLVDDTLAALEDLGRVARLNARGKVIAVTGSVGKTGTKEALKLCLDARGPTFATQGSL 149

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  +             A   G    R   ++      T
Sbjct: 150 NNHWGV----------PLSLARFPADAHYGVFELGMNHAGEIG-PLSR--MVQPDVAIIT 196

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H+++  + +   +AK  +FE + P  +  +   +  +++ V         R+ S 
Sbjct: 197 TVEAVHLEFFASVEGIADAKAEIFEGMTPAGTAILNRDNPHFARLVAAARTQGLTRIWSF 256

Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G Q G   HL +         VT S+ G+   +   LPG   V N+L       A   D 
Sbjct: 257 GTQEGADAHLLECSLHATSSAVTASIRGERIQYCLSLPGRHHVLNSLAVLLAVSAAEGDV 316

Query: 330 ALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-----RTITSGR 383
           A     L ++  + GR        ++G    +D ++ ++ + +               GR
Sbjct: 317 AAAARQLSQIAPIKGRGLRRRVALAKGSFTVIDESYNASPVSVAAAATVLGKADPGAGGR 376

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            I V G   +       +   +A       AD+      N +      +   +   + G 
Sbjct: 377 RIAVLGDMLELGAQAPSLHAGLADQFRRAGADLVFCCGPNMKF-----LFDRLPAALRGR 431

Query: 440 IEKGNRIEA--IRTAIEMLNKQDVLVVAGKG 468
             + +   A  +  A+      DV++V  KG
Sbjct: 432 HTEDSAALAPLVADAV---RAGDVVMV--KG 457


>gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 453

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 169/473 (35%), Gaps = 49/473 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF-- 59
           K+ ++      +LIN      ++    ++         ++  ++++ +  +K D   +  
Sbjct: 5   KITEIAKVVGGKLINCNKDIILKSVSTRVFG-------VKPEYLYIYLTYSKSD---YNP 54

Query: 60  ---IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
              + QAI  GA AI+V            I    P ++V+NT   L         K    
Sbjct: 55  NPDVEQAIKNGAAAIMV---------PCKIDCKVPQIIVENTDTALRTLCKHYRKKFDIP 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTGTSGK+S    +  +      +   +   +          +TT            
Sbjct: 106 VIAVTGTSGKTSTKDLIALVLSERFNTHKTLSNVND----LIGVPMTTLQINDTH----- 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                ++ + +   S+G  +  +D ++   G  T++G  HI    +++    A       
Sbjct: 157 ----QISVIEIGLRSYGHIKKGVDIVRPSIGVITSIGTAHISSFGSKENIMKA-KMEVAT 211

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K    II  DD     + ++ +      L+   +     ++ +     + +     +
Sbjct: 212 YFDKNDILIINGDDPLLSTIKEKPYKIIRISLNGKGEYNAKDVRDLGEKGVEFKCD--YK 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G++  F   +PG   VYNA+ A  +     I+   V   + K      R   V   +   
Sbjct: 270 GEEHLFKLKVPGIHNVYNAMFAIAIGDLFDIEVDDVKRGIVKFQPDNLRVNIVKMKNNAK 329

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGKIALDLADIA 413
            I   Y    +S++  +  +++    + I V G     G+  +     +G+  +   DI 
Sbjct: 330 IILDCYTSELDSMKAGINVLKSFGGNKKIAVLGSMYGCGNLTEEIHREIGRYVIGKCDIL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    N R  + E    + + G         + EA      ++ K DV+++ G
Sbjct: 390 VTVGGNARYINEE--AKDKLEG----KHCETKEEACSYLKNIIQKDDVILING 436


>gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
          Length = 432

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 136/374 (36%), Gaps = 22/374 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  +A+ QG+   +V  A            NT  
Sbjct: 16  VTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEAQYAPAG------NTHY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    I+ +TGT+GK++    +  +  +     +  G  + 
Sbjct: 70  ILVDNCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQGHSVLYTQGNLNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L       +   +  + + AS  G  +  ++  +   G  TN+
Sbjct: 130 H----------IGVPLTLL---RLKAHHDLAVIEMGASHPGDIRELVEITEPDYGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   +       K  L++ L  +    I    D  +  + + A            
Sbjct: 177 GKAHLEGFGSFDGVIKTKGELYDYLRRRGDSTIFIDHD--NPYLKEIAWGLNMIPYGTED 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +          + +   +     EG+  +    L GE+   N L A  +    G++ A +
Sbjct: 235 ELYVNGRITGNSPYLTFKWKAGKEGERHEVQTQLIGEYNFPNVLAAVTIGRFFGVEPAKI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L +      R +   T      I   Y     S+   + N R + +   +++ G   
Sbjct: 295 DKALAEYVPQNNRSQLKKTA-DNILIVDAYNANPTSMMAAISNFRNMQAENKMLILGDMR 353

Query: 393 DRDQGKRPIMGKIA 406
           +  +       KI 
Sbjct: 354 ELGKDSAEEHQKIV 367


>gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 194

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 14/154 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPM--QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +       QW + ++  V+ DSR+++AG +FV + G + DGH 
Sbjct: 1   MKMS------LAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQ 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A   GA+A + +      D         P LVVD+  + L         K    ++
Sbjct: 54  YVAKAFENGAKATLWAK-----DHPYDPADGYPRLVVDDPLEALQQLGKYYLNKINPVVV 108

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           AVTG++GK++    V  I              + 
Sbjct: 109 AVTGSNGKTTTKDMVASILATQMNVIKTYANFNN 142


>gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 468

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 157/471 (33%), Gaps = 41/471 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+DL+     ++       P+ +R         DSR ++ G  F A  G   DGHL+I  
Sbjct: 13  LKDLLPNGL-DVTGPDRPLPLTFR--------VDSRAVEPGDGFAAFQGESTDGHLYIES 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           A+A+GA  ++       +   A        +    +   L+  A     + P  +++ AV
Sbjct: 64  ALARGASVVLAERGRVSEKLPAQWPQ-VTFIFGHRSETALAELARAYLVRLPDLKHVAAV 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++  SF+ +I   S  +    G  +T+   +                       
Sbjct: 123 TGSVGKTTTRSFLARIMSASQRTHAASGNYNTLIGCSVAVLSAPFDV------------- 169

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + + A+  G     +      A + T +   H++   + Q     K  +F     K
Sbjct: 170 QCLVLEMGANHPGEIAQMVSFFPPTAAAITEVAPAHLEGFGSVQGVLREKAGIFGGGRLK 229

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++ AD+    E+  + +         G         +      K    +   G   
Sbjct: 230 D--AVLNADNPLLAELASQINTPVTTFGRDGSLSFEDDRLEWD-EGFKVSARLCYSGDRV 286

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G+  +Y    A  L + +G+     +        +PGR E V   +    I  
Sbjct: 287 PVSVRLSGKHGLYPLCCALALAVRMGVPFRQAVREAVSFESLPGRGEVVRLQNGAFLIDE 346

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            Y  +  S+   ++++  +   GR   + G  G         +G  A       +     
Sbjct: 347 SYNASPKSMTAAIQSLGEVQIRGRKFALLGSMG--------ELGAGASAAHQQVMEVARG 398

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE--MLNKQDVLVVAGKG 468
              +      ++   G           E +R A+    L   DVL+V  KG
Sbjct: 399 QGFDWWGAYGSDWQSGAKATDNLLTDWEEVRRAVAGLNLRSGDVLLV--KG 447


>gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
          Length = 476

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 149/457 (32%), Gaps = 45/457 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS D+R ++AG +FVA+   + DGH F+ QA+ +GA A +VS           + ++ P
Sbjct: 25  GVSIDTRTLRAGDLFVALSAAR-DGHEFVAQALEKGAAAALVSR------VPENVPADAP 77

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +LVV +  + L         +    I+AVTG+ GK+S    ++ +              +
Sbjct: 78  LLVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKTSTKEMLRTVIGGQRRVHAAEASYN 137

Query: 152 TISSFAQDNRLTTPSPIYLAKALSY----LSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                          P+ LA+        +   G+ H    A    L +  +  I     
Sbjct: 138 NHWGV----------PLTLARMPRDTEVGIIEIGMNHPGEIAPLARLARPHVAMITT--- 184

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               +G  H++           K  +F  L+P     I    D                +
Sbjct: 185 ----VGTAHLEAFDNIDGIAREKASIFNGLMPGGWAVINGDLDTTPILRAAAEATGAHIL 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                      L KV  I         +      F     G     NAL    +  A+G+
Sbjct: 241 TFGEAPANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVLAVVRALGL 300

Query: 328 DSALVLEHLEKLHV-----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           D AL    L +        +  R      + +     +D A  +N + M         + 
Sbjct: 301 DRALACSDLSQWTPPAGRGMRERLLLDPVDEKMAFELIDDAFNANPVSMAAALEVIAAAR 360

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKI------RAEIIHG 435
               V      R       M ++   +LA  A +  D P + + + +         +   
Sbjct: 361 PKDNVGRHARGRRIAILGEMLELGPDELALHAGL-ADLPATAELDVVHCVGKRMRALYEA 419

Query: 436 IPGFIEKGNRIEAIRTAIEMLN---KQDVLVVAG-KG 468
           +P      +  +A   A +        DV++V G KG
Sbjct: 420 LPPGNRGRHTEKASDLAAKAARLVDAGDVVLVKGSKG 456


>gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
 gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
          Length = 455

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 75/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +++       ++ +         +            + ++     
Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413
            Y     + + +L +   +     GR I V G   +       +   +A      L D  
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +           K   E + G        + EK +    I    E +   D++++  KG
Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441


>gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 455

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 75/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +++       ++ +         +            + ++     
Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413
            Y     + + +L +   +     GR I V G   +       +   +A      L D  
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +           K   E + G        + EK +    I    E +   D++++  KG
Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVML--KG 441


>gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 18/153 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M  ++L+      L+           +     VS+DSR I+ G +FVA+ G + DGH ++
Sbjct: 1   MTFRELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   +          + A
Sbjct: 52  DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 103

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           VTG+SGK++V   +  I +  G      G  + 
Sbjct: 104 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNN 136


>gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 457

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 77/482 (15%), Positives = 161/482 (33%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQVLDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I   +N    +  ++ +++             ++    + ++   E L   D +++  
Sbjct: 382 TVIFYGENIA--ELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILL-- 437

Query: 467 KG 468
           KG
Sbjct: 438 KG 439


>gi|150009948|ref|YP_001304691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|149938372|gb|ABR45069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
          Length = 427

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 139/399 (34%), Gaps = 33/399 (8%)

Query: 27  ERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           +  I+   +++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +         
Sbjct: 8   DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYYIGERT 67

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   ++VDN  K L   A          I+ +TGT+GK++    +  +        
Sbjct: 68  --------ILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLL 119

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +            T                 +  + + AS  G  +  +D +  
Sbjct: 120 YTEGNFNNHIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIVHP 166

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
             G  TN+GR H++   + +     K  L++ +   +    I  ++ Y + + K     G
Sbjct: 167 NYGIITNVGRAHLEGFGSFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAK-----G 221

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              ++ G         +V +           +GK       + G + + N L A  +   
Sbjct: 222 IEQITYGNGDDAFASGQVVSCDPFLVFNWKQQGKLHTVETHIIGSYNLDNVLAAVAVGRF 281

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             I +  +   +        R +F  T+     I   Y    +S+++ L N  T+     
Sbjct: 282 FKIPAERISRAIAAYEPTNNRSQFKKTD-NNELIIDAYNANPSSMKVALDNFITMPVQPK 340

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDN 419
            ++ G   +       +  ++   +     D   +  ++
Sbjct: 341 AIILGDMRELGPTSDELHAEVVAQIKKGQFDKVFLCGEH 379


>gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC7]
          Length = 494

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 139/434 (32%), Gaps = 35/434 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V       
Sbjct: 23  HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                ++ + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +
Sbjct: 78  ----VVKCDIPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133

Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              +    G  +           LT      + +  +    +     S+      L  + 
Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246
                   G   N+     + +    +   A +   ++  P              S    
Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301
                 +              +S       +    +         T++            
Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLP 313

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NAL AA    A+G+    + + L +     GR   +  +  G  I  D
Sbjct: 314 VHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRL--SMDGYHIIDD 371

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S+    K +      +I+V   +F  G   D     +  ++AL   D   +T 
Sbjct: 372 TYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-LTL 430

Query: 418 DNPRSEDPEKIRAE 431
            N  +     I  +
Sbjct: 431 GNHMAHTAAAINEQ 444


>gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
          Length = 471

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 85/475 (17%), Positives = 148/475 (31%), Gaps = 47/475 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR    G +FVA  G + DGH F   
Sbjct: 1   MIALSLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFAGERVDGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                                 T     P +VVD+ +  L   A  +  +    ++A+TG
Sbjct: 60  ----------AVVGAGAVAVLGTRPVGVPAIVVDDVQTALGALARHVVRRLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR   + F  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQVLQRKAPTVFTPGSLNNEIGLPLTALSATEE---------------T 154

Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELL 238
             + +E  + G+   R          G   N+G  HI     ++    A  ++       
Sbjct: 155 RFLVLEMGARGIGHIRYLAGLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPSE 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +   AI+ ADD Y + +  R           G         ++     +    +     
Sbjct: 215 AEGGTAILNADDPYVRAMASRTKAKVILFGESGEADVSAENVRLTDTG-QPAFRLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357
             D    L GE  V NAL AA +   +G+ +  +   L +       R E          
Sbjct: 274 ASDVTMRLYGEHHVSNALAAAAVAHELGMSADEIAVALSEAGSLSRWRMEVTERPDGVTV 333

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL--AD 411
           +   Y     S+   L+ +  +  GR    V G     GD    +   +G++A+ L  + 
Sbjct: 334 VNDAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSK 393

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  V       E           G      +   +   A+      L   DV++V
Sbjct: 394 LVAVG----GREAAWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLV 444


>gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
 gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
          Length = 458

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 146/390 (37%), Gaps = 29/390 (7%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P +     ++ ++ DSR +  G +FVA+ G + DGH +I  A+A GA A +V        
Sbjct: 17  PYEGAPLAVSGITIDSRAVTPGDLFVALPGERVDGHNYIDAAVANGAIAALVEHPVDA-- 74

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                  + P L V +    LS             ++A+TG+ GK++V +  + I  ++G
Sbjct: 75  -------DVPCLRVSSCLAALSDIGRASRDFSRSLVIAITGSCGKTTVKNLCRSIFTQAG 127

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G                  P+ LA+            V + A+  G   H    
Sbjct: 128 PTVATAGN----------YNNEIGVPLTLARLDDETR---FAIVEMGATRRGDIAHLCAL 174

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +    +  N    H++   +     + K  +F+  L  +  AI+  D  +     +R  
Sbjct: 175 ARPSITTVLNAMEAHLEGFGSVADVADIKAEIFDG-LGAQGTAILNLDQPWVSLWRERIA 233

Query: 262 NAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            AG   +S   G +G               + T+ V G++    FPLPG   V NAL AA
Sbjct: 234 RAGADTVSYSLGEEGDITVADLRDLGLQGSEFTLRVHGEEQAVRFPLPGRHSVANALAAA 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A G+D   ++  LE+     GR            I   Y     S+   +  +   
Sbjct: 294 ALATAAGLDLGTIVTGLEQAEAESGRLRAESLGEDKTLIDDSYNANPGSVRAAIDLLAA- 352

Query: 380 TSGRIIVVFGCG---GDRDQGKRPIMGKIA 406
           T+G  +++ G     G+    +   MG  A
Sbjct: 353 TAGNSLLILGEMLELGEESAERHREMGARA 382


>gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
 gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
          Length = 539

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 81/490 (16%), Positives = 148/490 (30%), Gaps = 55/490 (11%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
            L      E     +I      E+   +  ++DSR +Q G +FVA  G   DGH FIP A
Sbjct: 3   KLSAAQIIEATGGTAIGLEGREEQVYADFATTDSREVQTGTLFVAKPGAVTDGHRFIPMA 62

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----ILA 119
             +GA   +V      +          P + V +    +   A     +        ++ 
Sbjct: 63  FERGATLALVEREVLDEQGMPY-----PSIQVPDVVLAMGDLARYSIEQMRAQGELTVIG 117

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    +  I    G +   +G  ++              P+ +        S
Sbjct: 118 ITGSAGKTTTKDLLAAIFAPEGPTVAPVGSYNSE----------VGVPLTVF---RADES 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + A   G  ++  +      G+   +G  H             K  L E + P
Sbjct: 165 TRYLVIEMGADHVGNIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQP 224

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
             S A+  ADD     +  R+                    +        + T +   + 
Sbjct: 225 TGSLAL-NADDERVLRMASRSVAPITYFGVGEKTDANGQPYERYVAALNLRTTDAGCPEF 283

Query: 299 --------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFV 349
                   +++    L GE  V+N L AA +    GI    +   L K       R    
Sbjct: 284 TLRLPDGSEYEISSQLIGEHHVHNLLAAATIAYNSGISGEKIARALNKAAAASKWRMART 343

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI---------TSGRIIVVFGCG---GDRDQG 397
                   I   Y     S+   L+ +  +            R   V G     GD    
Sbjct: 344 DRADGVTVINDAYNANPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVE 403

Query: 398 KRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEI-IHG--IPGFIEKGNRIEAIRTAI 453
           +   +G++ + +     I   D     + + I     + G             EA +   
Sbjct: 404 EHDRIGRLVVRMNISKLIAVGD-----ETKPIYNAAHLEGSWGNEATWVKTPEEAEQILR 458

Query: 454 EMLNKQDVLV 463
             +   D+++
Sbjct: 459 AEVRPGDIVL 468


>gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 440

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 147/424 (34%), Gaps = 50/424 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       Q  +  +N++  DSR I+ G IF+ + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA                        L+VD+        A     K    ++
Sbjct: 54  FIEIAFDNGAIISFSEKEVEQAH-----------LLVDDNLLAFQKLAKYYLEKTKVPVI 102

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +  +   +    G  +          L  P           + 
Sbjct: 103 AVTGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNN-EIGLPYTILHMPDDTEKLVLEMGMD 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G      E +   L    L G              H+++  +++           +  
Sbjct: 162 HPGDIDFLSELAKPELAVITLIG------------EAHLEHMGSRENI--------AKGK 201

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  +     A +  ++        +++  G  G+ + + K+    +K+++T      
Sbjct: 202 MGITAGLHGELIAPADPIINAFIPDNQKIIRFGLPGEDLFITKLV--EHKEKLTFETNFL 259

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+PG++   NA++AA + +  G+  A + + L+++ +   R E+    +    +
Sbjct: 260 DESITIPVPGKYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLL 319

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLAD 411
              Y     ++ +IL+  + I    +GR I V     +       +  +I      +  D
Sbjct: 320 SDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPSAAQLHKEILKSIDFNKID 379

Query: 412 IAIV 415
              +
Sbjct: 380 KVYL 383


>gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
 gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
          Length = 455

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 152/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + +  +N+   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVARVVGAKNDVTVFLDDSLNKAEFDSRLIAEGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +            P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAALTLSEKEVASH----------PYILVDDVLTAFQALAAYYLQKTGVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTNYKTYKTQGNYNNEIGLPYTVLHMPDDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +              +     AK +L     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAHPKTAIVTLIGEAHLAFFKDRSEIAKGKLQIVDG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             E   ++   D+     +            V   G+   L+    +  K  +T      
Sbjct: 209 MPEGGLLLAPSDSIVDSYL-------PTKQQVVRFGQGAELEVTDLVERKDSLTFKTNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVPEEQIHQAFQNLELTRNRTEWKKATNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ + V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKLAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAI-RTAIEMLNKQDVLV 463
             I        ED  ++        P             ++ EA+ +   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTADEDQFEAMTKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners
           AB-1]
 gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
 gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
          Length = 455

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  I         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +++       ++ +         +            + ++     
Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413
            Y     + + +L +   +     GR I V G   +       +   +A      L D  
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +           K   E + G        + EK +    I    E +   D++++  KG
Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441


>gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
 gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
          Length = 178

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 7/131 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            QW +  +  +  DSR I  G +FV + G   DGH FI  A+A G +A            
Sbjct: 36  QQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMANGCQAAFWGQDL----- 89

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                   P+L V +    +   A+    K   N++AVTG++GK++    +  +     +
Sbjct: 90  -VDAPQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTKDLIAAVLSEKFV 148

Query: 143 SSFQIGPTSTI 153
           +    G  +  
Sbjct: 149 TYKTQGNYNNQ 159


>gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 457

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 160/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G             L  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN-YNNEIGLPYTVLHMPEGTEKLVLEMGQD 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G  H+  E     L + +   + L+  +     +D  +  + +             + 
Sbjct: 163 HLGDIHLLSE-----LARPKTAIVTLVGEAHLAFFKDRSEIAKGK-------------MQ 204

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +  A      A +  +++       +V+  G   +   L     +  K  +T  V   
Sbjct: 205 IADGMASGSLLLAPAAPIVEDYLPTDKKVVRFGQGAE---LGITDLVERKDSLTFKVNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
 gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
          Length = 478

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 113/315 (35%), Gaps = 21/315 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +  G +FVA+   + DGH F+  A+ +GA A +V            +  N 
Sbjct: 24  DGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEKGAGAALV------THVPEGVAENA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V++  + L    +    +    ++AVTG+ GK+S    +  I    G +   +   
Sbjct: 77  PLLIVEDVLRALEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  +      +        +H  +   L  +     +  
Sbjct: 137 NNHWGV----------PLTLARMPADTEYAVIEIGM----NHPGEISPLAQMAKPDVAMV 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                         A    +     + L     A+I AD  ++  +M +A +   R +  
Sbjct: 183 TTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRRLREVEF 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G  G    L  V    +   V    +G    F    PG     NAL A     A+G D A
Sbjct: 243 GEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASAQAMGADLA 302

Query: 331 LVLEHLEKLHVVPGR 345
           L    L +     GR
Sbjct: 303 LAAASLGRWTPYKGR 317


>gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis ES14902]
          Length = 452

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 131/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R       +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDN 397


>gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 470

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWRVDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSR------RPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+VD+ +  L         +    ++AVTG+ GK+S    + ++    G +   
Sbjct: 73  SEDAPLLLVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAA 132

Query: 147 IGPTSTIS 154
           +   +   
Sbjct: 133 VASYNNHW 140


>gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 484

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 144/476 (30%), Gaps = 43/476 (9%)

Query: 5   DLIYKDFPELINQLS----IFPMQWRERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLF 59
           D+I     E+   +     +      +  ++ V  +DSR I  G IFVA  G + DGHLF
Sbjct: 15  DMIALTLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGGIFVAKPGEETDGHLF 74

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---- 115
            P A+  GA  ++V     L           P ++V +    L   A  +  +       
Sbjct: 75  APWAVEAGAALLLVERELDLP---------VPQVLVPDVVDALGRLAHEVVARVRALGEL 125

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AVTG++GK++  + +  I +  G +   +   +            T           
Sbjct: 126 RMVAVTGSNGKTTTKNLLHAILETQGETVSPVASFNNEVGAPLTMLKVT----------- 174

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S       + AS  G +  RL  +                                 
Sbjct: 175 --RSTRFLVAEMGASGLG-EITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMV 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + L  E  A++ ADD     +  +                 +    + A       T+ +
Sbjct: 232 KDLLPEDTAVLNADDPRVASMSDKTQAPVLWFGRDARAA--VRATDIVASAAGTTFTLHL 289

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                  +             +AA             +    +      R+        G
Sbjct: 290 PDGSTRPVSFRVLGEHHVTNALAAAAGAWALGVDGDAIVSALQTVQRAERWRMEVLGGNG 349

Query: 356 GRIYVD-YAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL 409
             +  D Y  + +S+   L+ +  I     R + V G     G+  + +   +G +A+ L
Sbjct: 350 VTVINDAYNASPDSMAAALRTLAQIRGPEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRL 409

Query: 410 AD-IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +V     R    E I      G    I   +  EA      +L   D+++V
Sbjct: 410 NIGQLVVVGRPARRLHLEAIGQGSWDG--ESIFAEDAAEAREILDGILRDGDLVLV 463


>gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
 gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
          Length = 478

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 149/447 (33%), Gaps = 29/447 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  DSR +  G +FVA  G K DG+ +I  A+  GA  +  S   +        R +  +
Sbjct: 29  VEIDSRRVGEGSLFVAFAGEKVDGNSYIDAALDAGAAVVCASVEPAQATLEHARRVDATL 88

Query: 93  LVV--DNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L    D+  +FL   A +         ++AVTG+ GK++    ++             G 
Sbjct: 89  LRAEGDDCEEFLLRLAGAWRALHQDWTVVAVTGSVGKTTTKDMLRAGIATQRRVHATAGN 148

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            + +                L                   +  G         +      
Sbjct: 149 HNNLIGLPMTILSAPKDAEVL-------------VCECGMNHKGEILRLTRCCRPTIAVI 195

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP----AIIYADDAYSKEVMKRAHNAGC 265
           TN+G  HI    +++    AK  + E +           +    D  S    K A   G 
Sbjct: 196 TNVGTSHIGLLGSRENIACAKAEIVEGMEAHGDIRPTLILESGGDFTSFVSEKFARPKGI 255

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYNALVAAGLC 322
            V+ VG     I   +   +  +   T +   +D       F +PG   V +AL+A    
Sbjct: 256 DVVCVGSHAGDILRAQDVTVGEESLPTATFVTQDGWKKTVTFSVPGRVAVSDALMALEAI 315

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITS 381
             +G+D  + L+ +  +     R   +        I   Y  + +S+   L  + R  T 
Sbjct: 316 TLLGLDRDMALDAIATMPPTRMRLSVLHAVCGARIIDDSYNASPSSMAAALDVLSRMPTR 375

Query: 382 GRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           GR I + G  G+  Q ++ + G     +A    D+ +    +   E  E     +     
Sbjct: 376 GRRIAILGEIGELGQEEKRLHGYVGAYVAAKPIDLVVFVGKDAAREMAEA-AKTMGLSED 434

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +  + ++    +L   D ++V
Sbjct: 435 AIELVESVEDVMKIIPPILKDTDTVLV 461


>gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 461

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 159/474 (33%), Gaps = 41/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M   DL   +  E++   ++  P +  +RK+N +  DSR    G +F  I G + D H F
Sbjct: 1   MLKLDLTIGEMLEILETEAVGVPARTLKRKVN-LCMDSRESAKGVVFWPIKGARFDAHQF 59

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + Q    GA   VV+      +F            V++T K L   A           +A
Sbjct: 60  VSQMEKDGALMSVVNQTAIDPNFKMYAP-------VEDTTKALLKLAKGYQRLFKLKKVA 112

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++     + +      +    G  +               P+ L +       
Sbjct: 113 ITGSNGKTTTKEMTKAVLSMKYNTHATKGNFNNH----------IGVPMTLFQLKHS--- 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V +  S     +      +      TN+G  H++        FN         L 
Sbjct: 160 HEAAVVEMGTSGPDEIRPLSLATEPDIAVITNIGASHLERLGDLDGVFNE-KINITAGLK 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    I+ ADD    +V         +   V   G    + K   +   + +        
Sbjct: 219 ENGTLIVNADDERLCKVKA------TKHYKVVTFGVRRGVVKPEKLKWTENLCADFYVGR 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F+  +PG+  +Y+AL A  +  A+ I    + + L        R E    N       
Sbjct: 273 THFVLNVPGDHNLYDALAAIAVGQALRIPKGDIAKALAGFTSTSMRMEIKNANGFKVISD 332

Query: 360 VDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
             Y    +S +M L+ +  +   G+ I V G     G         +G +  ++    ++
Sbjct: 333 C-YNANPSSTKMALQTLGNMRVEGKRIAVLGDMLELGKESGNLHKQIGALVPEMNFDMLL 391

Query: 416 TDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +D +K        G+          E I    E++ + D+L+V  KG
Sbjct: 392 AV----GKDAKKYVEGAKSRGMKNVQYFETVPEVISMLGEVVAEGDILLV--KG 439


>gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 454

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 135/404 (33%), Gaps = 40/404 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               +  +N++  DSR+I  G +F+ + G + DGH FI  A   GA A     A      
Sbjct: 12  SDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVATFSERAI----- 65

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                S  P ++V+N        A     K   +++AVTG++GK+S    ++ +  ++  
Sbjct: 66  -----SGRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEAVLAKAYK 120

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G                  P  +           +           L   R+   
Sbjct: 121 TYKTQGN----------YNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQL-LSRIA-- 167

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +      T +G  H+ Y  +++    A+ ++        +  +I   D      +  +  
Sbjct: 168 RPHIAVLTLIGEAHLAYFGSREKI--AEGKMQIVDGMDSNGILIAPGDPILDPYLPDSQM 225

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                      G    L        K  +T            PL G++   NA++AA + 
Sbjct: 226 VI-------RFGDHQELVVEDIKERKDSLTFKTNVLPRPVTIPLTGKYNATNAMIAAYVG 278

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
             + +    ++E LE + +   R E++   +    +   Y     ++ +IL+    I   
Sbjct: 279 RLLAVPDEDIIEALEAVKLTRHRTEWIKAANGADLLADVYNANPTAMRLILETFAAIPAN 338

Query: 381 -SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDN 419
            +G+ I V     +       +  ++         D  +   D+
Sbjct: 339 LNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDD 382


>gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
 gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
          Length = 474

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 118/389 (30%), Gaps = 26/389 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     ++   L+   +Q  +  I  VS+D+R +  G +FVA+ G + DGH  +  A  
Sbjct: 1   MMRASLQQVATWLNQLSVQQPDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARL 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A +VS              + P + V++T   L        G+    ++A+TG++G
Sbjct: 61  AGAAAAIVSH--------LNPDIDLPQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAG 112

Query: 126 KSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++V   +  IC ++G +   +G   + I        L+      + +  +    +    
Sbjct: 113 KTTVKQLLASICAQAGPTLATLGNLNNDIGVPLTLLSLSDIDQFAVIEMGANHLGEIARL 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            ++     GL                                                  
Sbjct: 173 TALARPDVGL-----------ITMAGTAHVGEFGSVDAIVQGKGELFVGLVPEAQAVINL 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             Y  D +      + +                +         +    +           
Sbjct: 222 DSYGADRWWAMGSAQRNGFTLNNDPRARWTGEYNATTERLTIFENGQLL-----IESQPL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG     N L A  +    G    ++L  L       GR   V  + +   I   Y  
Sbjct: 277 PLPGAHNATNLLAAVAVARTAGFSKEIILAGLNSFTPPAGRMSLVACSEQLTVINDTYNA 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGD 393
              S+   L  +     G  + V G  G+
Sbjct: 337 NPESMCAALDYLVG-RPGLHLAVLGDMGE 364


>gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
 gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
          Length = 456

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 156/472 (33%), Gaps = 49/472 (10%)

Query: 10  DFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
           D  E+   L       Q+    +     DSR I +G +FV + G + DGH FIP A AQG
Sbjct: 4   DLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIGSGDLFVPLKGAR-DGHNFIPTAFAQG 62

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +     +              ++VD+        A     K   ++LAVTG++GK+
Sbjct: 63  AAATLSERPVAEGA----------YILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKT 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    + Q+   S  +    G             L  P               G  H+  
Sbjct: 113 TTKDMLAQLLATSYKTYKTQGN-YNNEIGLPYTILHMPENTEKLVLEMGQDHLGDIHLLS 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E +        L G   +    +                 +  + +  +           
Sbjct: 172 ELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPAD----------- 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                     K  +        +   G    +        K  ++      +     P+ 
Sbjct: 221 ----------KIVNEFLPADCKLVRFGPDSDIFLTRLEERKDSLSFECNFLEQRIDLPVT 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G++   NA++AA   +  G+  A + +   +L +   R E+   ++    +   Y     
Sbjct: 271 GKYNATNAMIAAYAALQEGVSEAAIAQAFSELELTRNRTEWKKASNGADILSDVYNANPT 330

Query: 368 SLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           ++ +IL+   TI +   GR + V     +     + + G +   L +  IVTD     +D
Sbjct: 331 AMRLILETFSTIPTNPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIVTDLFLYGQD 389

Query: 425 PEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGKG 468
            E +     EI   G   +  K +     E ++ A+   L   D +++  KG
Sbjct: 390 MEALYDYAKEIYPPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQILL--KG 439


>gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
 gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
          Length = 463

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 147/474 (31%), Gaps = 40/474 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  L  +                 +     VS D+R +  G IF+A+ G   +GH  +
Sbjct: 1   MTL--LWNRADLLAATSGHFAAASGTDIAGTGVSIDTRTLHPGDIFIALRGENSNGHDHV 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA  +V               ++  IL VD+T   +   A     +    +LAV
Sbjct: 59  ARALEAGAACVVAHEDCG---------TDPRILRVDDTLAAMQAMARYARARFGGRMLAV 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+SV   +       G +   +   +               P+ LA+  +  +  
Sbjct: 110 TGSVGKTSVKDMLHAALAACGPTHCAVASYNNHWGV----------PLTLARLPAGAAYC 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                   A            ++      T +   H+    + +A    K  +   L   
Sbjct: 160 VCEIGMNHAGEIA---PLAAMVRPDVAVVTTVASSHLGLMGSVEAIAREKAEILLALHRG 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I       +      A        +   +G  I    V A       ++ + G   
Sbjct: 217 GIGIIPDGVSGQAFFERNAAQAGATVWRAGTGEGCAIVPGPVRATATGSDFSLRLPGWVG 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +     PG     NA++A G   A G D A  +  L       GR            +  
Sbjct: 277 EAHVSAPGRHMAANAMLALGAACAAGADMARAVAGLATFRPGAGRGAMTKVMQDKVALLD 336

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
           + Y  +  S++  L  +  +  GR + V G     G     +   +       ADI    
Sbjct: 337 ESYNASPASVQAALDLLGLVAPGRRVAVLGDMLELGAFAGHEHVSLLPAVRANADIVFCC 396

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAGKG 468
             N ++     +   +   + G     +   A  +R A+      D ++V  KG
Sbjct: 397 GPNMKT-----LFDTLPPSLRGAWTPDSGQLAPLVRAAL---RAGDTVMV--KG 440


>gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 440

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 148/429 (34%), Gaps = 60/429 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       Q  +  +N++  DSR I+ G IF+ + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA                        L+VD+        A     K    ++
Sbjct: 54  FIEIAFDNGAIISFSEKEVEQAH-----------LLVDDNLLAFQKLAKYYLEKTKVPVI 102

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +  +   +    G  +          L  P           + 
Sbjct: 103 AVTGSNGKTTTKDMIAAVLSKKFKTYKTQGNHNN-EIGLPYTILHMPDDTEKLVLEMGMD 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G      E +   L    L G              H+++  +++           +  
Sbjct: 162 HPGDIDFLSELAKPELAVITLIG------------EAHLEHMGSRENI--------AKGK 201

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
              +  +     A +  ++        +++  G  G+ + + K+    +K+++T      
Sbjct: 202 MGITAGLHGELIAPADPIINAFIPDNQKIIRFGLPGEDLFITKLV--EHKEKLTFETNFL 259

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+PG++   NA++AA + +  G+  A + + L+++ +   R E+    +    +
Sbjct: 260 DESITIPVPGKYNATNAMLAAFVGLHYGLSEAEIKKALKEVELTRNRTEWKKAKNGADLL 319

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGD---------RDQGKRPIMGKIA 406
              Y     ++ +IL+  + I    +GR I V     +         +D  K     KI 
Sbjct: 320 SDVYNANPTAMRLILETFQAIPKNENGRKIAVLADMLELGPSAAQLHKDILKSIDFNKI- 378

Query: 407 LDLADIAIV 415
               D   +
Sbjct: 379 ----DKVYL 383


>gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
 gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
          Length = 455

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 75/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  +         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSELVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +++       ++ +         +            + ++     
Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413
            Y     + + +L +   +     GR I V G   +       +   +A      L D  
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +           K   E + G        + EK +    I    E +   D++++  KG
Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVML--KG 441


>gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 432

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/391 (18%), Positives = 142/391 (36%), Gaps = 24/391 (6%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS     + +  +  V++DSR+   G +F+A+ G   +G+ F  QA+  G    VV  A
Sbjct: 2   KLSALYQIFLDCAV--VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEA 59

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               +       N  I++VDN  + L   A+    +    ++ +TGT+GK++    +  +
Sbjct: 60  EYAPE------DNKHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             ++    +  G  +               P+ L +  +      +  + + A+  G  +
Sbjct: 114 LAKAHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HDLAVIEMGANHPGEIK 160

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             +   +   G  TN+G+ H++   + +     K  L++ L  K+   +    D      
Sbjct: 161 FLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRTKGELYDYLREKDDSTVFIHHDNVYLMD 220

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + R  N                     + +   +     +G        L GE+   NAL
Sbjct: 221 IARGLNLIPYGSENSLYVNGHVTGN--SPYLTFEWKAGKDGNLHQVQTQLIGEYNFPNAL 278

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +    G++S+ + E L        R +   T      I   Y     S+   L+N 
Sbjct: 279 AAVTIGRFFGVESSKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           R +T  R +++ G   +          KI  
Sbjct: 338 RNMTVERKMLILGDMRELGAESAAEHHKIVE 368


>gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
 gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
          Length = 471

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 85/470 (18%), Positives = 147/470 (31%), Gaps = 37/470 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        +   ++   V  DSR +  G +FVA  G + DGH F   
Sbjct: 1   MIALSLAEIADVVGGQTHDIPDPSAQVTGPVVRDSREVVPGSLFVAFAGERVDGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                                A+     P +VV + +  L   A  +  K    ++A+TG
Sbjct: 60  ----------AVVEAGAAAVLASRPVGVPAIVVPDVQAALGALARHVVRKLGTTLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    V Q+ +R   + F  G  +            T    +L            
Sbjct: 110 SAGKTSTKDLVAQVLRRKAPTVFTPGSLNNEIGLPLTALSATEETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPK 240
             + + A   G  ++         G   N+G  HI     ++    A  ++        +
Sbjct: 158 -VLEMGARGIGHIRYLTGLTPPKIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPSAEE 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+ ADD   + +  R           G          +     +    +       
Sbjct: 217 GGAAILNADDPLVRAMASRTKARVILFGESGEADVRAENVTLTDAG-QPAFRLHTPSGAS 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIY 359
           D    L GE  V NAL AA +   +G+  + +   L +       R E          + 
Sbjct: 276 DVTMRLYGEHHVSNALAAAAVAHELGMSVSEIATALSEAGSLSRWRMEVTERPDGVTVVN 335

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAI 414
             Y     S+   L+ +  +  GR    V G     GD    +   +G++A+ L     +
Sbjct: 336 DAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLV 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  S        E   G        +   AI      L   DV++V
Sbjct: 396 AVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAIDLLRSQLRPGDVVLV 444


>gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 455

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  I         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +++       ++ +         +            + ++     
Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFAINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413
            Y     + + +L +   +     GR I V G   +       +   +A      L D  
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +           K   E + G        + EK +    I    E +   D++++  KG
Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLKEDIKPHDIVML--KG 441


>gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
 gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
          Length = 821

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 84/503 (16%), Positives = 173/503 (34%), Gaps = 63/503 (12%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                E+ + +    +   +  I+ + +DSR +      +F A+   + DGH +IP+  A
Sbjct: 2   SNSIEEITSVIGAERIGKHQATIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYA 61

Query: 66  QGAE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           +G    +V      L  +     ++   L V NT K L   A++   +    ++ +TG++
Sbjct: 62  RGVRNFVVTDVPEQLSHY-----ADANFLQVGNTLKALQRLAAKHREQFQVPVVGITGSN 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+ V  ++ Q+     + +         S  + ++++  P  +             +  
Sbjct: 117 GKTVVKEWIYQLLSPEKVIT--------RSPRSYNSQIGVPLSV-----WMMNEHTELGI 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S  G  +     I+   G  TN+G  H +   + Q     K++LF+     +   
Sbjct: 164 FEAGISEMGEMEALQPIIQPTIGVLTNIGWAHQENFSSLQGKCMEKLQLFK---DCDVII 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               ++  S  V K    +     S+    + + ++K+        V     G   ++  
Sbjct: 221 YNGDNELISSCVSKSLFTSREIAWSMKDNERPLFIEKIEKDDTGTTVKYRYLGFLKEYRI 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P   +  + N+L A  + + + +    + E +  L  V  R E     +    I   Y  
Sbjct: 281 PFIDDASIENSLNALAVALYLMVSPEDIAERMAHLEPVAMRLEVKEGKNGCVLINDSYNS 340

Query: 365 TSNSLEMILKNI---RTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTD 417
              SL++ L  +         R  ++     +  Q  + +  ++A        D  I   
Sbjct: 341 DFASLDIALDFMARRTEDKGRRRTLILSDILESGQPSKLLYRQVADLVHSRKVDRII--- 397

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIRTAIEMLNKQDVLVVAGKGHETV 472
                     +  EI      F E   R      E I + I    + +V+++  KG    
Sbjct: 398 ---------GVGEEISAAASRF-EIDKRFFRTTAELIESGILSSLRNEVVLI--KGA--- 442

Query: 473 HIVTNGEKKMSVDCDIIREILGL 495
                       D   I ++L L
Sbjct: 443 ------RVFHFDD---ITDLLEL 456


>gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116]
          Length = 454

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 156/442 (35%), Gaps = 39/442 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++       +  I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V 
Sbjct: 9   IADITGGERVGNDLSIESVSTDTRSIEQGALFVALVGERFDAHDFCQQAVESGAGALLVQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              ++      +          +++  L   A+ ++       +A+TG+ GK++V   V 
Sbjct: 69  KRVNVNVPQVVVG---------DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q  G   F  G  +               P+ L              + + A+  G 
Sbjct: 120 SILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            ++    +K       N+   H++   +      A      + L     AI+  D     
Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLAAGGIAIVNLDSNGGA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +  +   +      S        +   +           + I+   ++ +    + G+  
Sbjct: 226 KWDEVLADKNVITFSQSNADADFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + + +G     +   L+ L+ V GR E    + +   I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALKMGATLEEIRSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD---------LADIAIVTD--D 418
            +  +      R +++      G+        +G+ A            AD  ++++  D
Sbjct: 346 AVDLLAAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISELCD 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFI 440
               E  +++   I   +   +
Sbjct: 406 GIHFETHQEMIDYIKQHLDQAV 427


>gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acidiphilium cryptum JF-5]
 gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium cryptum JF-5]
          Length = 451

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 93/447 (20%), Positives = 166/447 (37%), Gaps = 47/447 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR I  G +FVA+   + DGH F+P A A+GA  ++V+                
Sbjct: 26  TGVSIDSRTIAPGELFVALADAR-DGHDFVPDAEAKGAACVLVARDVGAG---------- 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V++ +  L+        +    ++AVTG+ GKS+    +++I    G +       
Sbjct: 75  PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRILSAFGATHAAEASF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  +         V +  +  G         +   G  T
Sbjct: 135 NNH----------IGVPLTLARLPAE---ADFAVVEIGMNHPGEIAPLSAITRPHVGVIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +G  H+    + +A  + K  L   ++P  +  +      +   + +RA +    V   
Sbjct: 182 AIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPRG--PFLSRLARRARDGVRVVSFG 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   L +  +  +   VT ++           PG     NA+ A     A+G+D A
Sbjct: 240 AQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAALAAAAALGLDPA 299

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
                L+    + GR      N  G  I +    Y  + NS+   L+ + ++  GR I V
Sbjct: 300 QAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL-SLLPGRRIAV 358

Query: 388 FGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIE 441
            G     GD    +   +      +AD+      + R    E PE+ R          ++
Sbjct: 359 LGDMLELGDYADDEHRDLADAVSGVADLVFACGPHMRVMFDELPERQRGA------WAVD 412

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   A+R A+ +    DV++V  KG
Sbjct: 413 AASLAPAVRAALAV---GDVVLV--KG 434


>gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M04-240196]
          Length = 452

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L + A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALINNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha153]
          Length = 452

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 131/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR IQ G +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSENKSVSRIVTDSRDIQEGDVFFALAGERFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L + A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVDPFVFGITGSGGKTTVKEMLASV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAVALSLAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 455

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  I         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +++       ++ +         +            + ++     
Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413
            Y     + + +L +   +     GR I V G   +       +   +A      L D  
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +           K   E + G        + EK +    I    E +   D++++  KG
Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441


>gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915]
          Length = 447

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 85/470 (18%), Positives = 148/470 (31%), Gaps = 41/470 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+   +       R   +      D R  + G +FVA  G   DGH F  QA 
Sbjct: 1   MIAMSVGEIAAAVGGLVAGDRAVTVTAAAVLDGREARPGGLFVAFDGEHVDGHDFAGQAG 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
             GA A++ S                P +VVD+ +  L   A+ +  +      ++AVTG
Sbjct: 61  QAGAVAVLGSRPTV-----------LPTVVVDDVQAALQALAAHVLARLRAGLTVIAVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +      +   +   +             P   +L            
Sbjct: 110 SQGKTSTKDQLGAVLASVAPTIATVANRNNELGVPLTVLRAGPETRFL------------ 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G      +   L      N+G  H+    +++A   AK  L    L    
Sbjct: 158 -VLEMGARHTGDIAMLTNLYPLDVAVVLNVGTAHLGEFGSREAIGRAKGEL-VRGLVPGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +   +           +    +    +     +   T+         
Sbjct: 216 TAVLNADDPRVALMRSLSDGPVLTFGYADHADVRVRDLTLDRFG-RPSFTLCTADASVGV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G  Q  NA  A    +A G+   +    L    +   R E     S    +   Y
Sbjct: 275 TLPFVGGHQAGNASAATAAALAAGVSLDVAAAVLGTASLSKWRMELRHLTSGVTLLNDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
             + +S    L  +  +   R I V G     G   + +   +G+ A   AD+ I     
Sbjct: 335 NASPDSTRAALDALLAVEGARRIAVLGEMRELGQASEAEHRAVGEYAAARADMVIAI--- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              E    +      G    +   +   A++     L   DV++V A +G
Sbjct: 392 --GETVRPLAD--GAG-DRAVVLADNDAAVKWLHGNLAAGDVVLVKASRG 436


>gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 455

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 51/480 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    V  +  +           +                I +   +  +   
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNE--------------IGVPITILEMKPT 153

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V           H L  I         +  +        +           + L +
Sbjct: 154 TEILVLEMGMDRAGQLHHLSEIVCPDVCVITMIGEAHIEFFGTRDKIADAKMEITDFLKE 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I   D+     +++       ++ +         +            + ++     
Sbjct: 214 DGKFIFNGDEP----LLQARAQKLNQLQATFGFNSTDTIYATNFNSYMHHASFTINDSKV 269

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P+ G+  V NAL A  +    G+    + + L        R ++   +     +  
Sbjct: 270 KFTIPMIGKHNVSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEAIMSD 329

Query: 361 DYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIA 413
            Y     + + +L +   +     GR I V G   +       +   +A      L D  
Sbjct: 330 VYNSNPTAAKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDEL 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +           K   E + G        + EK +    I    E +   D++++  KG
Sbjct: 390 YL------YGPEMKYLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVML--KG 441


>gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 500

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 83/494 (16%), Positives = 145/494 (29%), Gaps = 54/494 (10%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +       I    +      E  +   V  DSR +  G IF+A+ G   DGH ++  A  
Sbjct: 4   LSAGEIAAITGGELIDGAAAETIVAGPVEFDSRKVAPGSIFMALPGATVDGHDYVAAAGE 63

Query: 66  QGAEAIVVSSAYSLQDFSATIR------SNTPILVVDN------TRKFLSLFASR----L 109
           QGA   +V          A          N+ +   D           +   A      L
Sbjct: 64  QGAALAIVGRPVGYPALLAPASERAEGTDNSAVFGADEEGYGAAVLAAVDKLARHNTDVL 123

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
             +    ++ VTG++GK+S    +  +    G +    G          +N +  P    
Sbjct: 124 ADEEGMVVVGVTGSAGKTSTKDLIGALLGDLGETVAPPGS--------FNNEIGLP---- 171

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              AL            + A   G   H         G   N+G  H+    +++A   A
Sbjct: 172 -YTALRASRGTKFLVSEMSARGVGHIAHLTTVTPPKIGVELNVGSAHLGEFGSREAIAQA 230

Query: 230 --KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV-----LSVGYQGKFIHLKKV 282
             ++            AI+ ADD     +  R                G +  +      
Sbjct: 231 KGELVEALPAAEDGGIAILNADDDAVIAMRHRTRARVVTFALDERSKTGERADYWASDIR 290

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLH 340
                +    +     +  D    + G  QV NAL AA + +  G+  +++       + 
Sbjct: 291 LDEVARASFRLHHPYGEPVDIRLGVFGAHQVSNALAAAAVAVESGMLPASVARVLGNHVA 350

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCG---GD 393
               R +          I   Y     S+   +  +     GR       V G     G+
Sbjct: 351 ASANRMDVRTRRDGATIINDSYNANPESMRAGIDALAYTAGGRPEASSWAVLGQMGELGE 410

Query: 394 RDQGKRPIMGKIAL-DLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
               +   +GK       D A++  T  N R      I               +   A+ 
Sbjct: 411 ESAEEHTELGKFLGTRGIDHAVIVGTGVNQR-----AIADAAREHGVDTRSVEDVDAAVN 465

Query: 451 TAIEMLNKQDVLVV 464
              + +  +DV++V
Sbjct: 466 FVDQHVKPKDVVLV 479


>gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
          Length = 452

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 135/428 (31%), Gaps = 40/428 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  DL        I Q    PM    + ++ + +DSR I+ G +F A+ G + D H F+
Sbjct: 1   MKPLDL------NFICQALNLPMPSENKSVSRIVTDSRDIRVGDVFFALAGERFDAHDFV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPEN 116
                            +        R +       L VD+T   L   A          
Sbjct: 55  ED------------VLAAGAAAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPF 102

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +  +TG+ GK++V   +  I +R       +      ++           P+ L      
Sbjct: 103 VFGITGSGGKTTVKEMLAAILRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + +  +  G         K  A    N  R H+                  +
Sbjct: 153 NEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQ 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L  +  A+I  +DA       +         + G     +H + +       +  +   
Sbjct: 213 GLCSDGIALIPQEDANMAVF--KMATLNLNTRTFGIDSGDVHAENIMLKPLSCEFDLVCG 270

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +    + P+PG   V+NA  AA L +A G+    V E L+    + GR           
Sbjct: 271 DERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKGAT 330

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----D 411
            I   Y    +S++  +  +  + + R I V G  G+  + +   M       A     +
Sbjct: 331 LIDDTYNANPDSMKAAIDVLARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIE 389

Query: 412 IAIVTDDN 419
            A    DN
Sbjct: 390 AAYFVGDN 397


>gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 489

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 147/471 (31%), Gaps = 46/471 (9%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI---------PQAIAQGAEA- 70
            P       I     DSR      +FVA+ G + DGH FI            + +G  A 
Sbjct: 21  LPAALANLPIRSACIDSREASVDGLFVALQGERVDGHDFIAAAAARGVRAALVQRGRLAD 80

Query: 71  ----------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                     +++          A   +   ++ VD T   +   A+R   +    ++ +
Sbjct: 81  PSQLGLDRPFVLLDPDQGQIANEAPANA-FFLISVDQTLTAMHRLATRYRQQQDLVVVGI 139

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+S    +  +   +  +       ++ ++         P               
Sbjct: 140 TGSVGKTSTKEVLAAMLAPTMRTHKSPRSYNSENTLPLVVLGIEPE-------------H 186

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +   + G         +   G  TN+G  H++   T +    AK  L + L   
Sbjct: 187 QIAVLEMGIYNKGDLALLTTIAQPQIGIVTNVGASHLERMHTIENVAEAKSELVQALPAD 246

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +    D      M++   A      +  +             +         G+ +
Sbjct: 247 GWAIL--NYDDQRVRAMQQVTKAQVFTYGLDPEADLWADNIESRGLDGIGFDAHYRGEQW 304

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G   V+ AL AA + I +G+    +++ L        R            I  
Sbjct: 305 HIKLPLIGLHSVHTALAAAAVGIVLGLSWDSLIQGLR--SSAQLRLLSYPAVGGATLIDD 362

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTD 417
            Y  +  S    L  +  +  GR I VFG     G  D+    ++G  A D+ D   V  
Sbjct: 363 TYNASPVSCIAALNLLAEL-QGRRIAVFGDMAELGPHDESGHRLVGVRAADVVDQLYVVG 421

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  R    E I  E+           ++   I      L   D ++V  KG
Sbjct: 422 EKARWIGEEAI--EVGLPAEQVHVLPDKAALIAALQSTLQANDYVLV--KG 468


>gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11A3]
          Length = 457

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 155/475 (32%), Gaps = 52/475 (10%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +   ++  +       R+      +S DSR +    +F+AI G   DGH F+P  + +G
Sbjct: 6   SELNNVLGDIKNLSEGKRDFLNFKNISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVLDKG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +++V+      +     + SN P  VV++T +     A     K    I+A+TG+ GK+
Sbjct: 66  VQSVVI-----KKGMQRLLPSNFPYWVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  +  + G         +           T                     + +
Sbjct: 121 TTKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATEIE---------------DKALVL 165

Query: 188 EASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           E    GL Q  +     +      TN+G  HI    +++    A      + L  E   I
Sbjct: 166 EMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITYA-KCEISKYLNPEGVVI 224

Query: 246 IYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           I A+D + ++ +K                  +  F     +   +N    TI +E   F+
Sbjct: 225 IPANDPFLEKTLKEVWKGRVIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFE 284

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                       N L A  +   +GID A   +    +     +   +  + +       
Sbjct: 285 ISLEGF--HNASNFLFAYAVAKELGIDFASFNKFDFAILGGRNK---ILKSVKTTIYDES 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y  +  S++  +KN+      +   +FG            +G+ +           +N  
Sbjct: 340 YNASPESVKACIKNLLEKPRNKF-FIFGSMQ--------ELGEQSEKYHKEIFNLINNSD 390

Query: 422 SEDPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E    I  +         +     F+   N  +  +   +   K D +++  KG
Sbjct: 391 IEKCVFICDKKNEKSYTNYLKDKKKFLVLNNIKDVPKEINKSTKKGDSVLI--KG 443


>gi|309801877|ref|ZP_07695993.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221492|gb|EFO77788.1| Mur ligase family, glutamate ligase domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 288

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 10/178 (5%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--- 384
                  H  +   VPGR E            VDYAH   S+  ++  +      R    
Sbjct: 110 PFDSAAMHAMESVHVPGRMELFTGTDGDTVAIVDYAHNYTSVRALIDFVEQRYCERKPRI 169

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FI 440
            +V G  G++   +R  + + A D     + T ++  +E    I  E++  +        
Sbjct: 170 TLVAGSAGNKAFDRRQEIVEAAQDRIARFVFTAEDTDTEPYIDICNEMLGHVTNDHVDAT 229

Query: 441 EKGNRIEAIRTAIEMLNKQD---VLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
              +R++AI +A+E  +  D   V+++ GKGHE      N       D  ++  +L +
Sbjct: 230 VIVDRVKAIESAVEQAHSHDGLDVILIIGKGHERWIKDLNSHVAYEGDDCVVERLLNV 287


>gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
 gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
          Length = 461

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 88/247 (35%), Gaps = 17/247 (6%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +   L    +    ++I +V  DSR    G +F A+ G K DG  ++     +GA A+VV
Sbjct: 17  IAPLLKADCLNPNGKRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKGAAAVVV 76

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASF 132
             + + +   A  R   P+L  ++    L   A     + P    + +TG+ GKS+    
Sbjct: 77  PKSRAAE---ALARVRCPVLAAEDVLSSLHELAQNYVQRFPSVKTIGITGSCGKSTTKEA 133

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + +I    G ++   G  ++            P  I          +       +     
Sbjct: 134 LARITAVLGSTAKTPGNLNS--------EYGLPLSI-----FGLDETSRYGVFEMGIDHV 180

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G     +  +K      TN+G  H++   +Q+     K R+F   L     +        
Sbjct: 181 GEMDRMVGMLKPSIALLTNVGISHLEKMGSQEIIAEQKARIFHPGLEAGFVSSSCKHLDL 240

Query: 253 SKEVMKR 259
            + +  R
Sbjct: 241 IQTIAAR 247


>gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 300

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 18/153 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +     VS+DSR I+ G +FVA+ G + DGH ++
Sbjct: 1   MTFSELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   +          + A
Sbjct: 52  DQVAAKGAVGALVEHEVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 103

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           VTG+SGK++V   +  I +  G      G  + 
Sbjct: 104 VTGSSGKTTVKEMLASILRTRGPVLATRGNLNN 136


>gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 433

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 133/387 (34%), Gaps = 33/387 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS DSR   A  IF A+ G   DG++F  QA+A+GA   V+ +           + +   
Sbjct: 21  VSFDSRKDVANTIFFALKGACCDGNIFASQALAKGAAYAVIDN-------PRYYQEDERY 73

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V++T + L   A     +    I+A+TG++GK++    +  +  +        G    
Sbjct: 74  LLVNDTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAVLSQRYNCYATSGN--- 130

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +N +  P  +     LS   S  +  + + A+  G      + ++   G  TN+
Sbjct: 131 -----FNNHIGVPISL-----LSIKKSTEMAVIEMGANHIGEIAQLCEIVQPTHGLITNI 180

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++           K  L+  L        I + D+    V     N         Y
Sbjct: 181 SHAHLEGFGGINGVIKGKSELYTYLKQHGGVPFINSADSVLLNVANGFVNPIYYPQKGDY 240

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
               +               +    +       L G+   +N   A  +    GI+  +V
Sbjct: 241 YYCELKEAN--------PYLVYTSEQSTTVTTQLIGKHHFHNVAAALCIGKYFGIEPNMV 292

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              ++  +    R + +        +   Y     S++  L++   + S   +++     
Sbjct: 293 NTAIQAYNPSNNRTQLIKKG-TNSILLDAYNANPASVQAALESFSFLKSMYKVLILADMN 351

Query: 393 DRDQG----KRPIMGKIALDLADIAIV 415
           +  +      + I+ K A    D  ++
Sbjct: 352 ELGEESLAFHQAIIEKTAQQDYDAILL 378


>gi|189462962|ref|ZP_03011747.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
 gi|189430244|gb|EDU99228.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
          Length = 466

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 138/388 (35%), Gaps = 33/388 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  QA+ QG    V+  +    + +         
Sbjct: 55  VTTDSRNCPEGSMFIALKGETFNGNAFAAQALKQGCRYAVIDESEYAGEGT--------- 105

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    ++ +TGT+GK++    +  +  R   + +  G  + 
Sbjct: 106 ILVDNCLQALQQLANYHRRQLKTPVIGITGTNGKTTTKELISTVLSRKFNTLYTEGNFNN 165

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L           +  V + A+  G  +  +   +   G  TN+
Sbjct: 166 H----------IGVPLTLL---RLTKEHEMAVVEMGANHPGEIKTLVHIAEPDYGIITNV 212

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G+ H+    + +     K  L++       +   I  ++ Y   + +     G   +  G
Sbjct: 213 GKAHLQGFGSFEGVIRTKGELYDFLRAKGGATIFIQNENPYLNGIAE-----GLTCVRYG 267

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    ++ +         + EG   +    L G + + N L AA +    G+    
Sbjct: 268 QTAGLYVSGELISCSPFLSFRWTAEGVSHEVNTHLIGSYNLDNMLAAAAIGRYFGVSDDD 327

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   L        R +     +    I   Y     S+   LKN R I +   +V+ G  
Sbjct: 328 ISSALASYLPHNNRSQL-KETADNKLIVDAYNANPTSMMAALKNFRQIEAPHKMVILGDM 386

Query: 392 GDRDQGKRPIMGKIALDL----ADIAIV 415
            +  +  R    K+   L     D  ++
Sbjct: 387 KELGEASREEHQKVVDYLKECGFDRVVL 414


>gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 432

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 167/453 (36%), Gaps = 36/453 (7%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS     + +  +  V++DSR+  AG +F+A+ G   +G+ F  QA+  G    +V  A
Sbjct: 2   KLSALYKIFLDCAV--VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA 59

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               +      +N  I++VDN  + L   A+    +    ++ +TGT+GK++    +  +
Sbjct: 60  EYAPE------NNRHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +S    +  G  +               P+ L +  +      +  + + A+  G  +
Sbjct: 114 LSKSHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HELAVIEMGANHPGEIK 160

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             +   +   G  TN+G+ H++   + +     K  L++ L  KE   +    D  +  +
Sbjct: 161 FLVHIAEPDYGMITNVGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHD--NAYL 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M  AH                      + +   +     +G        L GE+   NAL
Sbjct: 219 MDIAHGLNLIPYGSEDALYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNAL 278

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +    G+++  + E L        R +   T      I   Y     S+   L+N 
Sbjct: 279 AAVTIGRFFGVEAGKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T  + +++ G         R +  + A +   I     +    E    +  +     
Sbjct: 338 RNMTVKKKMLILG-------DMRELGAESAAEHRKIVDFLQE-CSFEKVLLVGEQFTATH 389

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
           P +    N  E I+  ++    +D  +++  KG
Sbjct: 390 PPYHTYANAQEVIKE-LQTEKPKDYTILI--KG 419


>gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 484

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 74/485 (15%), Positives = 153/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + +  + +   DSR I  G +FV + G + DGH 
Sbjct: 28  MKL------TIHEVAQAVGAKNDVSLFEDTWLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 80

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 81  FIETAFENGATVTLSEKEVA----------NHPYILVDDVLSAFQALAAYYLEKTAVDVF 130

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 131 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 176 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 235

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +      +     K  +T      
Sbjct: 236 MAPVSLLLAPADP----IIEDYLPTDKKVVRFGSGAELEVTDLIE---RKDSLTFKANFL 288

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+ G++   NA++AA + +  G+    + +  + L +   R E+    +    +
Sbjct: 289 GQALDLPVTGKYNATNAMIAAYVGLQEGVSEEQIRQAFQNLELTRNRTEWKKAANGADIL 348

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 349 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGSQSVQLHNQMILSLSPDVLD 408

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 409 TIIF-----YGEDIAELAQLASQMFPIGHVFYFKKTADEDQFEDLVKQVKESLGANDQIL 463

Query: 464 VAGKG 468
           +  KG
Sbjct: 464 L--KG 466


>gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 457

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 77/478 (16%), Positives = 155/478 (32%), Gaps = 48/478 (10%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +  +++  +        +      +S DSR      +F+AI G   DGH FIP+ + +G
Sbjct: 6   SELNDVLGNIRNLRESKSDFLSFKNISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVLNKG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +++V+      +     + SN P   V++T +     A     K    I+A+TG+ GK+
Sbjct: 66  VKSVVI-----KKGMQRLLPSNFPYWAVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  +  + G         +           T                     + +
Sbjct: 121 TTKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATDIE---------------DKVLVL 165

Query: 188 EASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           E    GL Q  +     +      TN+G  HI    +++   +A      + L  E   I
Sbjct: 166 EMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNITHA-KCEISKFLNPEGVVI 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--KVCAIHNKQQVTISVEGKDFDFL 303
           I A+D + ++ +K +       + +        +                ++  ++  F 
Sbjct: 225 IPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFE 284

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     N L A  +   +GID A    +        GR + + +          Y 
Sbjct: 285 ISLEGFHNASNFLFAYAVSKELGIDFASF--NKFDFVSFGGRNKILKSLKTTIYDE-SYN 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            +  S++  +KN+      +   +FG            +GK +           +N   E
Sbjct: 342 ASPESVKACIKNLLEKPRNKF-FIFGSMQ--------ELGKESEKYHKEIFNLINNSDIE 392

Query: 424 DPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
               I  +         +     F+   N  +  +   +   K D +++  KG     
Sbjct: 393 KCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVPQEINKSTKKGDSILI--KGSRCWQ 448


>gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
 gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
          Length = 508

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 78/494 (15%), Positives = 146/494 (29%), Gaps = 52/494 (10%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+ + +         +  + +    DSR I+ G +F+A+ G + DGH FI QA
Sbjct: 1   MIALTAAEIAHIVGGELVHVDDDATVTQPAEFDSRKIREGSLFLALPGARVDGHDFIDQA 60

Query: 64  IAQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           +A            G  A+VV      QD +A   ++ P        + L   A  +  +
Sbjct: 61  VAAGATMALAARDVGQPAVVV-KPLGKQDSNADAFAHDPDGSGAAVLEALGKLARYVVDE 119

Query: 113 HPE---NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
             +   +++ VTG++GK+S    +  + +  G +    G  +            TP    
Sbjct: 120 LKKDQLHVVGVTGSAGKTSTKDMMATLLRTDGPTVAPKGSFNNEIGHPYTVLQCTPE--- 176

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                            + A   G   H         G+  N+G  H+    +++    A
Sbjct: 177 ----------TKYLVAEMSARGIGHVAHLARIAPPTIGAVLNVGTAHLGEFGSREVIAQA 226

Query: 230 --KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             ++        +   A++ ADD Y   +  R         +     +            
Sbjct: 227 KGELVEALPAAEQGGVAVLNADDDYVTGMAPRTQAKVVFFSADESSERHATADYRATNVQ 286

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-------LVLEHLEKLH 340
                 +            P + QVY A   A    AI +          +       + 
Sbjct: 287 LDDFARASFDLHVPDGRTFPIQLQVYGAHQVANALAAIAVAVESGIDAEQVAKAMAAHVA 346

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLE------MILKNIRTITSGRIIVVFGCG--- 391
               R +          I   Y    +S+              T        V G     
Sbjct: 347 ASERRMDVQQLTGNIVVINDSYNANPDSMRAGIDALARTAAGPTHQDASSWAVLGQMGEL 406

Query: 392 GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GD  + +   +G+ +     D  I   ++           E+  G+       +   A  
Sbjct: 407 GDSAEDEHSSLGEYLVGRGIDRLIAVGESSNVHALADKAEEL--GL-NTSRVPDTSTAAD 463

Query: 451 TAIEMLNKQDVLVV 464
                +   DV++V
Sbjct: 464 LVAAEVRPDDVVLV 477


>gi|119961244|ref|YP_947466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
 gi|119948103|gb|ABM07014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
          Length = 496

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 145/479 (30%), Gaps = 45/479 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     E+ +          +     V +DSR    G ++VA  G   DGH F+  A  
Sbjct: 1   MIALTAAEIADITHGRLTGDPDIVPTSVVTDSRESTHGSLYVAKPGEHADGHDFVDAAFE 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE---------N 116
           +GA  ++     +  D         P +VV++    +   A+    +             
Sbjct: 61  RGAVLVLGEREVTDADGRPF-----PAVVVEDAVLAMGALAAESVRRIRAERASRGEDFT 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++    +  +   +G +    G  +               P+ +    + 
Sbjct: 116 VIGITGSAGKTTTKDLLAGVLSTAGATVAPQGSYNGE----------VGVPLTVF---AA 162

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            ++     + + A+  G  ++  + +K   G    +G  H       +     K  L E 
Sbjct: 163 DATTRFLVIEMGATGLGHIKYLAEMVKPDIGVVLVVGTAHAGEFGGVENIAKTKGELVEA 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTIS 294
            L +   A+I  DD     +  R         S     + +  + V            + 
Sbjct: 223 -LSEHGTAVINLDDGRVAAMRARTKAKVLGFTSSPATTEEVEARNVVVNGQGFPDFDLVL 281

Query: 295 VEGKDFDFLFPLPGEFQVYNALV--AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +G     +            L+  AA    A    + +      +      R E     
Sbjct: 282 PDGGPAVEVRSRLIGGHHVTNLLAAAAAAFAAGIPAADIATSLSSQSAASRWRMERTERA 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALD 408
                I   Y     S+   L+++  +  GR    V G     G+    +   +G   + 
Sbjct: 342 DGVTIINDAYNANPESMRAALRSLADLGQGRRTWAVLGAMLELGEDSIREHTAVGTQVVR 401

Query: 409 L--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           L  + + +V       E      + I  G             EA       L   D+++
Sbjct: 402 LNISRLVVV-----GREARALYISAIQEGSWGDECSFTETVEEAYELLQRELEPGDLVL 455


>gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 474

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 149/477 (31%), Gaps = 46/477 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   +I   V  DSR ++AG +F A  G   DGH +   
Sbjct: 1   MIALSLAEIAEIVGGQAHDIPDPAARITGPVVIDSREVRAGSLFAAFAGEHVDGHDYAE- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      + A       A      P LVVD+ +  L   A  +  +   +++A+TG
Sbjct: 60  ----------RAVAAGAVAVLAARPVGVPALVVDDVQTALGALARAVVERLGTDVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+  R   + +  G          +N +  P         +  +S   
Sbjct: 110 SAGKTSTKDLIAQVLDRHAPTVWTPGSL--------NNEIGLP-------LTALRASDET 154

Query: 183 THVSVEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELL 238
            H+ +E  + G+   R          G   N+G  HI     ++    A  ++       
Sbjct: 155 RHLVLEMGARGIGHIRYLTGLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPAA 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A++ ADD   + +  R                     ++     +    +     
Sbjct: 215 EDGGVAVLNADDPLVRAMASRTKARVTLFGEADEAAVRAENVRLTENG-QPSFRLHTPTG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357
             D    L GE  V NAL AA +   +G+    +   L +       R E          
Sbjct: 274 CSDVTLRLYGEHHVSNALAAAAVAHELGMPVEEIATALSEAGTLSRWRMEVTERPDGVTI 333

Query: 358 IYVDYAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
           +   Y     S+   L+              R   V G     GD    +   +G++A+ 
Sbjct: 334 VNDAYNANPESMRAALRALAAMGRAAQARGARTWAVLGKMAELGDASLVEHDAVGRLAVR 393

Query: 409 L-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L     +   D   S        E   G        +   A+      L   DV++V
Sbjct: 394 LNVSKLVAVGDREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 449


>gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
 gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
          Length = 488

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 84/442 (19%), Positives = 151/442 (34%), Gaps = 32/442 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++AG +FV +VG + DGH F+  A   GA+A +V         +A++      
Sbjct: 58  VCTDSRRLEAGALFVPLVGEQFDGHAFLADAARCGAQAALV-----AAGSNASLPEGLLH 112

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V +T       AS    +    ++AVTG++GK++    ++      G         + 
Sbjct: 113 WRVPDTTLAYQQLASLHRQQLNAAVVAVTGSAGKTTTRELIRAALASLGPIQASASNNNN 172

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                     TT                    V +     G  +      +      TN+
Sbjct: 173 DIGVPLTLLGTT-------------QHHAAVVVEMGMRGPGEIERLSRCAQPDIAVITNI 219

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI    +++A   AK  +   L       I   D      + +       RV  VG 
Sbjct: 220 GTAHIGRLGSREAIAAAKCEITAALKLDGVVVIPAGDPLLETALARVWQGRIHRVALVGD 279

Query: 273 QG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            G     L     + +  + +  +   +FD+  PL G     N L+A  +   + +DS  
Sbjct: 280 PGLTNSQLPAANDLADVDEQSGVLTLGEFDYRMPLAGRHNARNWLLARAVASGLNVDSDS 339

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           ++     +     R   +G  +        Y  +  ++   L  +      R  V+    
Sbjct: 340 LVALDVDVPGGRNRRLKLGALTVLDET---YNASPEAVLAALDLLAQQPGRRFAVLGTML 396

Query: 392 GDRDQG---KRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              D+     R ++ + +AL L  + +VT             AE    +  F    +   
Sbjct: 397 ELGDESAALHRAVVERAVALKLDGLVVVTSG-----AEATAMAEAGASLERFAVVASPEA 451

Query: 448 AIRTAIEMLNKQDVLVV-AGKG 468
           A       L+  D L++ A +G
Sbjct: 452 AAEPLRGWLSAGDCLLLKASRG 473


>gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Shewanella amazonensis SB2B]
 gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella amazonensis SB2B]
          Length = 455

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 96/453 (21%), Positives = 166/453 (36%), Gaps = 47/453 (10%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  ++ + SDSR +  G +FVA+ G + DGH F   A A GA A++V     L     
Sbjct: 19  GEDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASALLVERELPLA---- 74

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                 P LVV +T+K +    + +        +A+TG++GK+SV   V  +  +     
Sbjct: 75  -----LPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKTSVKEMVATVLSQHHSVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +               P+ L                + A+  G +      +  
Sbjct: 130 FTAGNFN----------NEIGVPLTLL---RLEQGHEYGVFELGANHKG-EIDYTSSLVR 175

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            + S  N            +A            L ++   I+  DD Y++ ++ +     
Sbjct: 176 PSVSLVNNVGSAHLEGFGSEAGVAEAKSEIYLHLAQDGVGIVNLDDRYAETMLNKLKGKR 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                +G   +    +       +    +   G       PL G+ QV NAL  A +CIA
Sbjct: 236 VLTFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALATAAICIA 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG 382
           +G+    +   L KL  V GR         G  + VD  Y    NS+   +  ++ I++ 
Sbjct: 296 LGLPLQEIAAGLAKLAPVKGRM---MPRQLGRLLLVDDSYNANPNSVGAAIDWLKEISTN 352

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPR----------SEDPEKIR 429
           R +V+   G  GD        +G+ A +   D         R           E+ + + 
Sbjct: 353 RTLVLGDLGELGDNAALLHFELGQKAKEAGLDSLFCLGSLSRHASQAFGSKHFEELDALV 412

Query: 430 AEIIHGIPGF------IEKGNRIEAIRTAIEML 456
           +E+I+ I G       + KG+R  A+   +E L
Sbjct: 413 SELINYINGVEGDVTLLVKGSRSAAMERVVEAL 445


>gi|188995067|ref|YP_001929319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594747|dbj|BAG33722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 434

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 129/374 (34%), Gaps = 29/374 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR      IF A+ G   DG+ F   A+ +G    VV     ++D           
Sbjct: 16  VTTDSRQTPPDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDE--------RY 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+    L   A+         ++ +TGT+GK++    +  +   +    +  G  + 
Sbjct: 68  LLVDDVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L +  +      +  + + A+  G         +   G  TN+
Sbjct: 128 H----------IGVPLTLLRLKAEHR---IAIIEMGANKPGDIAELTRIARPNFGLITNI 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ +  +     +  DD    ++ +     G + +S G 
Sbjct: 175 GRAHLQGFGSLEGVRRTKEELYDFIRAEGGILFLNFDDDTLIDMSQ-----GLQSVSYGT 229

Query: 273 QGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    + A +       +     +      L G++ + NAL A        +    
Sbjct: 230 SADATVRGLIVANNTPYLCLDLFDSSNEQQVCTNLVGDYNLPNALAAITAGRFFDVPDEA 289

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           ++  L        R +++ T      I   Y     S+   L N  ++ + + +V+    
Sbjct: 290 IVSALATYKPSNNRSQWIETERGNSLIVDAYNANPVSMRAALDNFDSLHTDKPLVLILGD 349

Query: 392 GDR--DQGKRPIMG 403
            +    + KR  M 
Sbjct: 350 MNELGAESKREHMA 363


>gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
 gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
          Length = 356

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 19/154 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI +A   GA A +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIERAFENGAAATLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           AVTG++GK++    +  +   +  +    G  + 
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGNYNN 137


>gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
 gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
          Length = 462

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 128/369 (34%), Gaps = 28/369 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N +S D+R ++ G +FVA+  ++ DGH +I  A   GA A +VS           +  N 
Sbjct: 24  NGISIDTRTLKMGDLFVALK-DQRDGHEYIKIAFENGAAAALVSR------VPDGLDENL 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+    L   A     +    ++ +TG+ GK+S    ++ I   +G +       
Sbjct: 77  PLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKTSTKEMLKSILIANGKTHAAERSY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG--IKLIAGS 208
           +               P+ LA+              +E   +  D+ R      KL    
Sbjct: 137 NNHWGV----------PLTLARMPKE-----TDFAVIEIGMNNPDEIRPLAKLAKLDVAI 181

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+   H+   +  +    AK  +FE L       +      +   +          + 
Sbjct: 182 VLNVAPVHLKAFKNIEGIAYAKAEIFENLSSSNIAIVNSDLSTFDILLNTVQKVRSKLIT 241

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                     L       NK  VT  +   DF+F F   G+    NA+       A+GI+
Sbjct: 242 FGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVFAAAEAVGIE 301

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMILKNIRTIT-SGRI 384
              +           GR +        G    +D  Y     S+E  +  +     SGR 
Sbjct: 302 RKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVLSQSEASGRK 361

Query: 385 IVVFGCGGD 393
           + + G  G+
Sbjct: 362 VAILGDMGE 370


>gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58]
 gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria
           meningitidis MC58]
          Length = 455

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 132/410 (32%), Gaps = 35/410 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R       +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + RI V+   G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPRIFVMGDMGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 400


>gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
 gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
          Length = 454

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 73/442 (16%), Positives = 157/442 (35%), Gaps = 39/442 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           I  ++       +  I  VS+D+R I+ G +FVA+VG + D H F  QA+  GA A++V 
Sbjct: 9   IADITGGERIGNDLSIESVSTDTRSIEQGALFVALVGERFDAHNFCQQAVESGAGALLVQ 68

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
              ++      +          +++  L   A+ ++       +A+TG+ GK++V   V 
Sbjct: 69  KRVNVNVPQVVVG---------DSKVALGQVAAWVHQTCQTPTVAITGSCGKTTVKEMVA 119

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I Q  G   F  G  +               P+ L              + + A+  G 
Sbjct: 120 SILQLKGKVLFTAGNFN----------NDIGVPLTLL---RSQQDDDYAVIELGANHIGE 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            ++    +K       N+   H++   +      A      + L     AI+  D     
Sbjct: 167 IEYTTQLVKPDIAMVNNVAAAHLEGFGSIDGVKQA-KGEIYQGLAAGGIAIVNLDSNGGA 225

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---HNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +  +   +      S      + +   +           + I+   ++ +    + G+  
Sbjct: 226 KWDEVLADKNVITFSQSNADAYFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHN 285

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NA+ A+ + + +G     +   L+ L+ V GR E    + +   I   Y  +  +++ 
Sbjct: 286 VANAIAASIIALKMGATLEEIRSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKA 345

Query: 372 ILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALD---------LADIAIVTD--D 418
            +  +      R +++      G+        +G+ A            AD  ++++  D
Sbjct: 346 AVDLLAAFQGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISELCD 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFI 440
               E  +++   I   +   +
Sbjct: 406 GIHFETHQEMIDYIKQHLDQAV 427


>gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 112/348 (32%), Gaps = 29/348 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R+I  G +F A+ G   +G+ F  +A+ QGA   VV           T+  +  I
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE---------TMDQDIRI 63

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  + L   A          +  +TG++GK++    +  +      +    G  + 
Sbjct: 64  IQVSDVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNN 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      +     +A      + Q    +    S   +               TN 
Sbjct: 124 HVGVPLTILSMSKD-TEIAIIEMGANHQLEIALLASISQPTIGY------------ITNY 170

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L++     ++  ++  DD+   E  K  +  G      G 
Sbjct: 171 GKAHMEGFGGLEGIIKGKSELYDFAFEHQTQVMVNFDDSLQSEKTKDHNRFGFGHSKGGV 230

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   K  + +    + +  +G        L G F   N   AA L +   +    +
Sbjct: 231 T------WKSTSDNEFASIQLETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVPLKDI 284

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              LE       R E          +   Y     S+ + ++N     
Sbjct: 285 KTALEAYVPSMNRVE-WRKTQYNAVLMDAYNANPTSMSLSIQNFGKWH 331


>gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
 gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
          Length = 453

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 157/460 (34%), Gaps = 36/460 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  +    +   + +INEV++D+R I  G +FVA+ G +           A    A  
Sbjct: 7   QALADVLSAELIGADCQINEVTTDTRQITPGCLFVALKGERF---------DAHDFAADA 57

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           +++       S  +    P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   
Sbjct: 58  LAAGAGALLVSKRLPLGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I ++ G   +  G  +               P+ L              + + A+  
Sbjct: 118 TAAILRQCGEVLYTAGNFN----------NDIGVPLTLL---RLQPQHDFAVIELGANHI 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +     +       NL   H++   +      AK  +F  L       I   ++ +
Sbjct: 165 GEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIINADNNDW 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                +       R       G      ++       Q T+           PLPG   V
Sbjct: 225 PHWQTQLVGKTVWRFSPQATDGVDFFASEISVNGKGTQFTLHSPFGAVAIELPLPGRHNV 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA L  ++G     V   L +L  VPGR   +        +   Y     S+   
Sbjct: 285 ANALAAAALATSVGASLEAVRVGLGQLQAVPGRLFPIQLKPGQLLLDDSYNANVGSMTAA 344

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDPEKI 428
            + +  +   R++V       GD  +     +G+ A  LA  D   +T           +
Sbjct: 345 AQVLAEMPGYRVLVAGDMAELGDEAEECHRQVGE-AARLAGIDKV-LT--------VGSL 394

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +           ++   I    E+L +  V+ V  KG
Sbjct: 395 SQLLSAASGQGEHFQDKAAVIARVAELLTEHTVITVLIKG 434


>gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640]
 gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06]
          Length = 452

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 132/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSENKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R   +   +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGNDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R HI                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALANNAMRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALALAAGLGLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|329956058|ref|ZP_08296829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
 gi|328524817|gb|EGF51871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
          Length = 432

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 138/367 (37%), Gaps = 22/367 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   VV  A            +T
Sbjct: 14  TGVTTDSRNCPEGSLFIALKGDTFNGNAFAAKALETGSAYAVVDEAAYAPAG------DT 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN  + L   A+    +    I+ +TGT+GK++    +  +  +     + +G  
Sbjct: 68  HYILVDNCLRTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNILYTLGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L +  +      +  V + AS  G  +  ++  +   G  T
Sbjct: 128 N----------NPIGVPLTLLRLKAE---HELGVVEMGASHPGDIKELVEIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  + +  I    D  +  + + A          
Sbjct: 175 NVGKAHLEGFGSFEGVIRTKGELYDYLRRQGNSTIFIHQD--NPYLTQIAWGLNPVTYGE 232

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                        + +   +      G+  +    L G++   NAL A  +    G+++A
Sbjct: 233 EDNLYINGHVTGNSPYLTFEWKAGKAGERHEVQTQLIGDYNFPNALAAITIGHFFGVEAA 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + + L +      R +   T      I   Y     S+   + N   + +G  +++ G 
Sbjct: 293 KIDKALHEYEPRNNRSQLKKTA-DNTLIIDAYNANPTSMLAAISNFHNMQAGGKMLILGD 351

Query: 391 GGDRDQG 397
             +  + 
Sbjct: 352 MRELGKD 358


>gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 457

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 156/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+     +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 457

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 156/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+     +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +       +  ++ L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
 gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
          Length = 428

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 142/423 (33%), Gaps = 39/423 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +                 
Sbjct: 16  VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYFIGERT-------- 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN    L   A R        I+ +TGT+GK++    +  +        +  G  + 
Sbjct: 68  ILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      T                 +  + + AS  G  +  +D  +   G  TN+
Sbjct: 128 HIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIAQPNYGIITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++   + +     K  L++ +   +    I  D+ Y KE+       G   ++ G 
Sbjct: 175 GRAHLEGFGSFEGVIKTKGELYDYMRRTKGKIFINQDNKYLKEIAN-----GIEQVTYGS 229

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    V + +         +GK       L G + + NALVA  +     I +  +
Sbjct: 230 DETAFAWGCVVSCNPYLTFEWRQQGKIHTVETHLIGSYNLDNALVAVAVGRFFKIPAERI 289

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              +        R +   T      I   Y    +S+++ L N  T+      ++ G   
Sbjct: 290 SRAITAYEPTNNRSQLKKTE-NNELIIDAYNANPSSMKVALDNFATMPVSPKALILGDMR 348

Query: 393 DRDQGKRPIMGKIALD----LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           +       +  ++         D   +       E  +K           +      IEA
Sbjct: 349 ELGPTSDELHTEVVARIKEGNYDKVFLC-----GEHFQK---AAGKDFTTYATTEELIEA 400

Query: 449 IRT 451
           +R 
Sbjct: 401 LRK 403


>gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
 gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
          Length = 436

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 135/425 (31%), Gaps = 36/425 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR      IF+A+ G   DG+ F   A+ +G    +V       +       ++  
Sbjct: 17  ITTDSRICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVD------EQKYQKPDDSRY 70

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  K     A     +     + + G +G +   +  + +    G     +     
Sbjct: 71  ILVDNCLKTYQQLAREHRRRF---HIPIIGITGTNGKTTTKELVSAVLGKKYSVLHTDGN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++     +                    +  + + AS  G  +  ++ ++   G  TN+
Sbjct: 128 FNNDVGVPK----------TLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGIITNV 177

Query: 213 GRDHIDYHQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           G+ H+    + +       ++  +       +   I AD+ Y   + +            
Sbjct: 178 GKAHLQGFGSFEGVIRTKGELYDYLRAKQGGNKVFINADNPYLMNISQGLTLIKYGKRDD 237

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   +       + +         + +    + G + + N L AA + +  GI  A
Sbjct: 238 CELSVKGEVTGCSPFLDFRWYNTQAGHWN-EVHTRMIGAYNIDNMLAAACIGLHFGISEA 296

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E L K      R +     +    I   Y     S+   ++N + +     I + G 
Sbjct: 297 DIDEALSKYTPSNNRSQLT-VTNDNKLIVDAYNANPTSMHAAIENFKAMHVSPKIAILGD 355

Query: 391 GGDRDQGKRPIMGKIALDL--ADIAIVTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRI 446
             +     +    +IA +L  AD      DN     E+          G   F       
Sbjct: 356 MRELGNASKEEHQRIADELKTADF-----DNVWLVGEEFYN----TKSGFRKFHNIEEVK 406

Query: 447 EAIRT 451
            A++T
Sbjct: 407 TALQT 411


>gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
 gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
          Length = 447

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 76/472 (16%), Positives = 168/472 (35%), Gaps = 44/472 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+  LS       ++KI   + DS+ +Q G +F A+ GN  DGH F+  
Sbjct: 1   MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQKVQPGDLFFALPGNATDGHQFLKH 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                  A   + A  +            ++ VD+T+  L    S         ++ +TG
Sbjct: 59  ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++   F + I      +          S  + +++LT P  + +A+       + V
Sbjct: 113 SVGKTTTKEFSKTILSSIYKTH--------ASPKSYNSQLTVPLSLLMAEG-----DEDV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  Q     ++++      +   +  +           ++    +L K  
Sbjct: 160 MILEMGVSEPGNMQDL---LRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYILQKSK 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  D  Y  ++   +  A     S          K +        V I    +++  
Sbjct: 217 LQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAISG----DSVVIQTPEENYCL 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                 +    N L+A  L   + +    V+  L +L + P RFE    + R G   ++ 
Sbjct: 273 PIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE---HSMRNGMQVIND 329

Query: 363 AHT--SNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
           A+     ++   L  +      G+II++ G     G   +    ++ + A    D+    
Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +  +    + +       +  F    +  + ++         DV+++  KG
Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILL--KG 434


>gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
 gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
          Length = 448

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 19/131 (14%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D+      ELI +         +  +N V +D+R I +G +FVA+ G + DGH +I Q
Sbjct: 7   LSDIAKACDGELIGE---------DCSLNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQ 57

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +GA  +V      + +           + V +T     + A  +       ++ +TG
Sbjct: 58  AVQEGAVGVVSDRVVDVPN----------YVKVFDTTLAYGVIARLIRDAFKGPVVCITG 107

Query: 123 TSGKSSVASFV 133
           ++GK++V  ++
Sbjct: 108 SNGKTTVKDWL 118


>gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Riemerella anatipestifer RA-YM]
 gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 424

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 129/388 (33%), Gaps = 35/388 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N+VS DSR I  G +F A  G   +       AI +GA A++V               + 
Sbjct: 14  NKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVEQK-------EYENISK 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I  V +T KFL   +     K    I+A+TG++GK++    +  +  +     F  G  
Sbjct: 67  NIFYVPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKGNL 126

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
           +             P                +  V + A+ H  +  RL  I +   G  
Sbjct: 127 NNHIGVPLTLLSIKPE-------------HEIAVVEMGAN-HQKEIERLCQIAQPDYGYV 172

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++     +     K  L++ L  +    ++ A+D    E  K      C    
Sbjct: 173 TNFGKAHLEGFGGVEGVIKGKSELYDYLKKENKQILVNANDTIQVEKTKDYSKIICFGTL 232

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  +           +   +  +         +           A  L +  GID 
Sbjct: 233 QSDYDFQLFYDNQRVGLIFEGEEMISQLTGAYNFTNIS---------AAVTLGLHFGIDK 283

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387
            L+ E +++      R + +        +   Y    +S+ + L+N       + +++  
Sbjct: 284 NLIKEAIQEYTPTNMRSQIMQKG-DKTLVLDTYNANPSSMAVSLENFALFNGCKTVIIGD 342

Query: 388 FGCGGDRDQGKRPIMGKIALDL-ADIAI 414
               GD  + +   + + A  L  D  I
Sbjct: 343 MLELGDASKEEHKTILQKAQSLNFDKII 370


>gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
 gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
          Length = 432

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 167/453 (36%), Gaps = 36/453 (7%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS     + +  +  V++DSR+  AG +F+A+ G   +G+ F  QA+  G    +V  A
Sbjct: 2   KLSALYQIFLDCAV--VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA 59

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               +      +N  I++VDN  + L   A+    +    ++ +TGT+GK++    +  +
Sbjct: 60  EYAPE------NNRHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +S    +  G  +               P+ L +  +      +  + + A+  G  +
Sbjct: 114 LSKSHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HELAVIEMGANHPGEIK 160

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             +   +   G  TN+G+ H++   + +     K  L++ L  KE   +    D  +  +
Sbjct: 161 FLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIDHD--NAYL 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M  AH                      + +   +     +G        L GE+   NAL
Sbjct: 219 MDIAHGLNLIPYGSEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNAL 278

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +    G+++  + E L        R +   T      I   Y     S+   L+N 
Sbjct: 279 AAVTIGRFFGVEAGKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T  + +++ G         R +  + A +   I     +    E    +  +     
Sbjct: 338 RNMTVKKKMLILG-------DMRELGAESAAEHRKIVDFLQE-CSFEKVLLVGEQFTATH 389

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
           P +    N  E I+  ++    +D  +++  KG
Sbjct: 390 PPYHTYANAQEVIKE-LQTEKPKDYTILI--KG 419


>gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
 gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
          Length = 450

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 91/465 (19%), Positives = 166/465 (35%), Gaps = 54/465 (11%)

Query: 11  FPELINQLSIFPMQWRERKINEVS----SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
             +L+  L   P+   E  + +VS    +D+R I+ G +F+A+ G   DGH F+  AIAQ
Sbjct: 7   ISQLLEVLCAQPINLSEAALTQVSSTIQTDTRRIKPGEVFLALRGENFDGHDFVSHAIAQ 66

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A +V S Y          ++  +L V +T +           +    ++ VTG+ GK
Sbjct: 67  GAIAAIVDSDYE--------NADVAVLQVRDTLQAYQQLGRWWRDRLNIPVIGVTGSVGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +    G      G          +N +  P  +               +  
Sbjct: 119 TTTKELIAAVLATEGRVHKTFGN--------FNNEIGVPKTL-------LELDTEHDYAV 163

Query: 187 VEASSHGLDQHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           VE +  G  Q R      +   G  TN+G  HI+   +++A   A        +P++S A
Sbjct: 164 VEMAMRGEGQIRELTQIARPNIGVITNVGTAHIELLGSEEAIARA-KCELLAEMPEDSVA 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  D+       ++  +       +        L              +++  +     
Sbjct: 223 ILNHDNPLLMATAQQVWSGEVVTYGLSGGDIQGVLTDNQ----------TIKVGEMRLPL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG     N L A  +   +GID + +   + K+++  GR +          +   Y  
Sbjct: 273 PLPGRHNASNFLAALAVAQVLGIDWSTLQNGV-KVNMPTGRSQRFTLPHDIILLDETYNA 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNP 420
              ++   L+ +      R I V G     G+R       +G+    L  D  +V  D  
Sbjct: 332 APEAMTAALQLLADTPGKRKIAVLGAMKELGERSLQLHQRVGETVQRLQLDGLLVLVD-- 389

Query: 421 RSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLV 463
             +D + I      GIP   F    +    +      +   D ++
Sbjct: 390 -GKDAQAIAQS-AEGIPSECFTTHADL---VARLKTFVQAGDRIL 429


>gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
 gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
          Length = 472

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 156/455 (34%), Gaps = 49/455 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +   VS DSR ++ G +FVA+ G + DGH F+ Q   +GA   ++S   +        
Sbjct: 32  DFEATGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTADRGAAGALISKPVA-------- 82

Query: 87  RSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
               P ++V++T   L     +           AVTG+ GK+SV   V+   +R+G +  
Sbjct: 83  ---IPAVLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTSVTRAVEAGLRRAGKAHA 139

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +                   P+ LA+              V  +  G        I+  
Sbjct: 140 SVKS----------YNNHIGVPLTLARMPRD---TQRAVFEVGMNHSGEITPLSGFIRPH 186

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A + T +G  H++     +             +     A++ AD+ +   +   A  AG 
Sbjct: 187 AVAITTVGPVHLENFADGEEGVARAKAEIFAGIEPNGVAVLNADNPWFPLLKAEAEKAGA 246

Query: 266 RVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            V S G  +G    L +  A  N   +T  + G    F     G     N+L    +  A
Sbjct: 247 EVWSFGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVLLMLEA 306

Query: 325 IGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITS 381
           + +D    L  L +   + GR  E V     G    VD  Y     S++  LK +     
Sbjct: 307 LDVDRETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTLGAREV 366

Query: 382 -GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            GR IVV       G         +   IA    D+               +   +   +
Sbjct: 367 AGRRIVVLTDMLELGPLSARFHSDLATPIAGADIDLVFC---------AGPLMKSLWEAL 417

Query: 437 PGFIEKGNRIEAIRTA---IEMLNKQDVLVVAGKG 468
           P     G    A   A   +  +   DV++V  KG
Sbjct: 418 PPTRRGGYAESAAELAPQVVSAIRAGDVVMV--KG 450


>gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
 gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
          Length = 471

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 148/472 (31%), Gaps = 41/472 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +        +   ++   V  DSR +++G +FVA  G + DGH F   
Sbjct: 1   MIALSLAEIAAVVGGQTYDIPDPAVQVTGPVVRDSREVESGSLFVAFAGERVDGHDFAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                                A+     P +VVD+ +  L   A  +  +    ++A+TG
Sbjct: 60  ----------AVVEAGAVAVLASRPVGVPAIVVDDVQTALGALARHVVERLGATLVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ +    + F  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQVLRSKAPTVFTPGSLNNEIGLPLTALSATEE---------------T 154

Query: 183 THVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELL 238
             + +E  + G+   R          G   N+G  HI     ++    A  ++       
Sbjct: 155 KFLVLEMGARGIGHIRYLADLTPPKVGLVLNVGTAHIGEFGGREQIAQAKGELVEGLPPA 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                AI+ ADD   + +  R                     ++ A   +   ++     
Sbjct: 215 EDGGAAILNADDPLVRAMASRTKARVILFGESDEADVRAENVRLTA-GGQPSFSLHTPSG 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357
             D    L GE  V NAL AA +   +G+ +  +   L +       R E          
Sbjct: 274 CSDVTMRLYGEHHVSNALAAAAVAHELGMSADEIARALSEAGSLSRWRMEVTERPDGVTV 333

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADI 412
           +   Y     S+   L+ +  +  GR    V G     GD    +   +G++A+ L    
Sbjct: 334 VNDAYNANPESMRAALRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGK 393

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +       S        E   G        +   A+      L   DV++V
Sbjct: 394 LVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 444


>gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
          Length = 428

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 135/391 (34%), Gaps = 31/391 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G IF A+ G+K DG+ +  +A+A G    V+ +                 
Sbjct: 16  VTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYFIGERT-------- 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN    L   A R        I+ +TGT+GK++    +  +        +  G  + 
Sbjct: 68  ILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      T                 +  + + AS  G  +  +D  +   G  TN+
Sbjct: 128 HIGVPLTLLRLTHD-------------HEMAVIEMGASHPGDIKELVDIAQPNYGIITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H++   + +     K  L++ +   +    I  D+ Y KE+       G   ++ G 
Sbjct: 175 GRAHLEGFGSFEGVIKTKGELYDYMRRTKGKIFINQDNKYLKEIAN-----GIEQVTYGS 229

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    V + +         +GK       L G + + NALVA  +     I +  +
Sbjct: 230 DETAFAWGCVVSCNPYLTFEWKQQGKIHTVETHLIGNYNLDNALVAVAVGRFFKIPAERI 289

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              +        R +   T      I   Y    +S+++ L N  T+      ++ G   
Sbjct: 290 SRAIAAYEPTNNRSQLKKTE-NNELIIDAYNANPSSMKVALDNFATMPVSPKALILGDMR 348

Query: 393 DRDQGKRPIMGKIALD----LADIAIVTDDN 419
           +       +  ++         D   +  ++
Sbjct: 349 ELGPTSDELHTEVVARIKEGNYDKVFLCGEH 379


>gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 12P80B1]
          Length = 494

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 137/434 (31%), Gaps = 35/434 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V       
Sbjct: 23  HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +
Sbjct: 78  ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133

Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              +    G  +           LT      + +  +    +     S+      L  + 
Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246
                   G   N+     + +    +   A +   ++  P              S    
Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301
                 +              +S       +    +         T++            
Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLP 313

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NAL AA    A+G+    + + L +     GR   +  +  G  I  D
Sbjct: 314 VHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRAMPPKGRLMRL--SMDGYHIIDD 371

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S+    K +      +I+V   +F  G   D     +  ++AL   D    T 
Sbjct: 372 TYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-FTL 430

Query: 418 DNPRSEDPEKIRAE 431
            N  +     I  +
Sbjct: 431 GNHMAHTAAAINEQ 444


>gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
 gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
          Length = 470

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 139/455 (30%), Gaps = 35/455 (7%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              E    +    +   +      VS+DSR    G +FVA+ G++ D H F+    A   
Sbjct: 4   TLREAAAVIPGAAVSGDDSIAFERVSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAHNV 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A++ +      +  A   +        +TR  L   A+    +    ++AVTG++GK++
Sbjct: 64  SAVLATRTPDNFEVPALRVTG-------DTRTALGALANGWRQRFSLPLVAVTGSNGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  I   +   + ++      ++           P+ L +         V      
Sbjct: 117 VKEMISSIFAAAVGEASRLATAGNFNNDV-------GLPLTLFRLNETHKLAVVELGMNH 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                L        +       N  R+H ++  T +A            L  E  A+  A
Sbjct: 170 PGETALLGKIA---EPTVAVVNNAQREHQEFMATVEAVALEHA-AVIHALKPEGVAVFPA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +DAY+      A        ++           V       +++I       D    + G
Sbjct: 226 NDAYAGIWRVAATGNRIIDFALNTAEHTTEA-AVKGSLEGSELSIDTAEGHVDVTLQVLG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD-YAH 364
               +NAL A    +A G+    +   LE    V GR +          G  +  D Y  
Sbjct: 285 AHNAHNALAATAAALAAGVSLDAIKRGLEAFGAVKGRLQVKRAVLGAMAGATVIDDTYNA 344

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPR 421
             +S+   +  +    S R++V+   G  GD        +G  A     D      +  R
Sbjct: 345 NPDSMLAAIDVLAARPSPRVLVMGDMGEVGDNGPEFHREVGAYAKAQGIDALYALGEASR 404

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                                 +    +    +  
Sbjct: 405 --------DACAAYGDEAHHCDDVEALVAHLKQAA 431


>gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus]
          Length = 463

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 95/475 (20%), Positives = 173/475 (36%), Gaps = 43/475 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++       L+N      +         V  DSR +  G +FVA  G + DGH F 
Sbjct: 4   MTLGEIAGITGGRLVNSDGSAEVTA------SVEYDSRKVVPGGLFVAFPGERVDGHDFA 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILA 119
                          A        T  +  P +VV+++ + ++  A  +  + PE  ++ 
Sbjct: 58  S-----------AVVAAGAAGVLGTRDTGEPGVVVEDSLRAVATLAHEVVARLPELTVVG 106

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+SGK++   ++ Q+  R G +    G  +               P  + +A +    
Sbjct: 107 LTGSSGKTTTKDYIGQLLSRLGPTVALPGSLN----------NELGFPYTVLQAGADTR- 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + A   G  +H     +   G   N+G  HI    + +    AK  L E  LP
Sbjct: 156 --FLVLEMGARGVGHIRHLTGIARPSIGVVLNIGAAHIGEFGSVEGTALAKGELVEA-LP 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +   A++ ADDA    +  R        +      +   +        +    +    + 
Sbjct: 213 QTGVAVLNADDALVSAMASRTGAR-VVTVGEAAGAQLRAVDVTLDPAGRASYVLEHGERR 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G  QV N+L AA + +  G+    ++  L ++ +V  R   V     G  + 
Sbjct: 272 GTVRLRVAGRHQVANSLSAAAVALTAGLAFDDLVTALSEMSMVSDRRMDVFERPDGVTVI 331

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIA 413
            D Y    +S    L+ +  +++GR    V G     G+ +      +G++A +L  D  
Sbjct: 332 DDSYNANPSSTAAALRALAAMSAGRRTTAVLGYMAELGEFEVSGHAEVGRLAAELGVDRL 391

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I   +N R        AE+           ++  AI    + L   DV++V  KG
Sbjct: 392 IAVAENAR--PILDGAAEVGAWRGTARFAADQAAAIEILQDDLRADDVVLV--KG 442


>gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC
           27126]
          Length = 431

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 127/369 (34%), Gaps = 25/369 (6%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G +++A+ G   +GH FI  A   GA A++ S   +         ++ P+++V++T++ L
Sbjct: 1   GAVYLALKGPNFNGHDFISTAEKAGASAVIASEDVA---------TSLPVIMVEDTKEAL 51

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            L  + +        +A+TG+SGK++V      I +R G      G  +           
Sbjct: 52  GLLGAAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRGNVLATNGNFN----------N 101

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
               P+ L              + + A+  G   +  + +K    +  N    H++   +
Sbjct: 102 DIGVPLTLL---RLEPQHEYAVMELGANHIGEIAYTTNLVKPDVATIVNAAASHLEGFGS 158

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 AK  +F+ L       +            K                     + +
Sbjct: 159 LLGVARAKSEIFKGLGSDGVAVVNVDSQFSEFWQGKLKQTKTLTFSPQQKNDADFRAEDI 218

Query: 283 CAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                      +     D      +PG   V NALVAA L + +G     V + L  +  
Sbjct: 219 TIGLDGCAAFHLVCPQGDMSIQLTIPGVHNVGNALVAAALTLQVGASLENVRDGLLAMKQ 278

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKR 399
           V GR        +   +   Y     S+   +  + + +  R++V+      G++ +   
Sbjct: 279 VSGRLNVKQLTEQVRLLDDTYNANVASVNAAIDTLSSFSGIRVLVLGDMKELGEKARFYH 338

Query: 400 PIMGKIALD 408
             +G+ A  
Sbjct: 339 EQVGEYAKQ 347


>gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 492

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/428 (14%), Positives = 135/428 (31%), Gaps = 35/428 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++                     R+++ V+ DSR     ++FV I G + DGH FI
Sbjct: 4   MSLQEITT-----ACGGTYYGEPSLLTREVSGVAIDSRKAGKDFLFVPIKGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + QGA   +             +  ++P ++V +  + L   A          ++ +
Sbjct: 59  PQVMEQGALCTLSEHP---------LSDSSPYILVSSCAQALKDIAEHYRRALGIKVVGI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTS---------TISSFAQDNRLTTPSPIYLA 171
           +G+ GK+S    +  I ++        G  +                +  +         
Sbjct: 110 SGSVGKTSTKEMIASILEQKYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQ 169

Query: 172 KALSYLSSQGVTHVSVE-ASSHGLD--------QHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +              +       L+        +     +     S  ++  +  D   +
Sbjct: 170 EMNRLAKIAQPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRSGASIILNGDDDKLS 229

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           + A  +A     ++       +    D+  +   + ++ +             F   +  
Sbjct: 230 EIATVHAASFSKQDGTTVVPYSDSTHDETSAASAVDKSGDTTPIFFGKDPHNAFYADEIQ 289

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                     I     DF  +  +PG   VYNAL    + I +G+    +   +E L  V
Sbjct: 290 SLGLKGTSCKIHTPAGDFTVIISIPGAHMVYNALAGIAVGIELGLTLDEIKTGIEALQPV 349

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG--GDRDQGKRP 400
            GR   + T          Y     S++  L  + T  + ++ ++      G ++     
Sbjct: 350 AGRNHMIETEHLTILDDC-YNANPVSMKASLDVLSTALTRKVAILGDMFELGTKELLLHR 408

Query: 401 IMGKIALD 408
            +G  A +
Sbjct: 409 EVGTYAAE 416


>gi|317504089|ref|ZP_07962091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
 gi|315664761|gb|EFV04426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
          Length = 446

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 142/426 (33%), Gaps = 36/426 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR+     IF+A+ G   DG+ F   A+ +G    ++      +        N  +
Sbjct: 24  ITTDSRNCPKDSIFLALKGASFDGNKFAKAALEKGCAYAIIDEPAYAE------ADNDRL 77

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  K     A          ++ +TGT+GK++    V  +           G  + 
Sbjct: 78  ILVDDCLKTFKEIAREHRRSFQIPVIGITGTNGKTTTKELVSAVLAERYRVMHTEGNFNN 137

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +               L   ++  +  V + AS  G  +  +  ++   G  TN+
Sbjct: 138 DVGVPK-------------TLLRLDATHEIAVVEMGASHPGDIEKLVTYVEPTCGMITNV 184

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +A   E+ ++             
Sbjct: 185 GRAHLLGFGSFEGVKRTKGELYDYLKAHDGLLFLNESNADLVEMARQREMNRIMTYGQSD 244

Query: 273 QGKFI----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                              +   T   + + +D    L G + + N L A  + +  G+ 
Sbjct: 245 DANVQGEVLDCAPFLRFTWRNMATTESKVRTYDVQTHLIGAYNIDNMLAAITIGLHFGVT 304

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   L        R +     ++   I   Y    +S+   ++N + +     + + 
Sbjct: 305 PEQINHALSHYIPANNRSQLE-VTAKNKLIVDAYNANPSSMAAAVENFKLMNVEHKMAIL 363

Query: 389 GCGGD----RDQGKRPIMGKIALDLADIAIV-------TDDNPR-SEDPEKIRAEIIHGI 436
           G   +         + ++ K+A D      +       T    R  ++ ++++AEI    
Sbjct: 364 GDMRELGEVSALEHQKLVDKLAEDGFKEVWLVGEEFGKTQTAFRKFKNVDEVKAEIAAHC 423

Query: 437 PGFIEK 442
           P     
Sbjct: 424 PENYYI 429


>gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
 gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
          Length = 459

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 152/445 (34%), Gaps = 38/445 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V+ DSR +  G +FVA++G   DGH F+             + A        +  + 
Sbjct: 23  VSGVAFDSREVGPGDLFVAMLGEATDGHRFLD-----------QAFAQGAAGALVSADTP 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P + V ++ + L         +    I+ VTG+ GK+S    +    +R        G 
Sbjct: 72  HPHVKVADSFRALEDLGRASRARTQATIIGVTGSVGKTSAKEALYAALER--------GW 123

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
              +    +     T  P+ LA+    +         +  +  G        ++      
Sbjct: 124 HGRVHRSVKSYNNHTGVPLSLARMPRDVR---AGVFEMGMNHAGELSALTAMVRPHIAIV 180

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H ++   + A  +A      + L     AII  D  +   ++  A     R+++
Sbjct: 181 TAIAPAHTEFFPDESAIADA-KGEIFQGLEPGGTAIIPYDSPHRDRLIAAAKPYAARIVT 239

Query: 270 VGYQ--GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G+        ++ +   +    VT  +  ++ +F    PG+  V NAL       A G 
Sbjct: 240 FGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVSNALAVLAAVDAAGG 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D  L    L +L  + GR       +    I   Y     S+   L  +     GR + V
Sbjct: 300 DLGLAGLALAELGGLAGRGARFRAANGALIIDESYNANPASMRATLAVLAE-EPGRHVAV 358

Query: 388 FGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            G     GD        + + I     +  ++       E    + A  + G   F+   
Sbjct: 359 LGEMRELGDDSADYHAGLAEPILAAHVEKVLLV-----GESMAPLAAA-LEGRVDFVHVT 412

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   A      ++   DV+++  KG
Sbjct: 413 DAKAAQAALASIIAPNDVVLI--KG 435


>gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
 gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
          Length = 453

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 92/466 (19%), Positives = 162/466 (34%), Gaps = 43/466 (9%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           + +  +    +   + +I EV++D+R + AG +FVA+ G +           A    A  
Sbjct: 7   QALADVLSAELIGADCQIIEVTTDTRQVTAGCLFVALKGERF---------DAHAFAADA 57

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V++       S  +  + P LVV +TR  L   A+ +  + P  ++A+TG+SGK+SV   
Sbjct: 58  VAAGAGALLVSKRLLVDVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I +  G   +  G  +               P+ L              + + A+  
Sbjct: 118 AAAILRECGEVLYTAGNFN----------NDIGVPLTLL---RLQPQHDFAVIELGANHI 164

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G   +     +       NL   H++   +      AK  +F  L       I   ++ +
Sbjct: 165 GEIAYTTALTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFTGLPADGVAIINADNNDW 224

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                        R      +G       V       Q T+           PLPG   V
Sbjct: 225 PHWQSMLNDKTVWRFSPQAAEGVDFFASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNV 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA L +++G     V + L++L  VPGR   +        +   Y     S+   
Sbjct: 285 ANALAAAALAMSVGASLEAVRQGLKQLQGVPGRLFPIALTENKLLLDDSYNANVGSMTAA 344

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA--DIAI--------VTDDNP 420
            + +  +   R++VV      G   +     +G+ A  LA  D  I        +   + 
Sbjct: 345 AQVLAEMPGYRVMVVGDMAELGADAEECHRQVGE-AARLAGIDKVIGIGPLSQALCAASG 403

Query: 421 RSEDPEKIRAEII--------HGIPGFIEKGNRIEAIRTAIEMLNK 458
             E  +   A I         H +   + KG+R  A+   +  L +
Sbjct: 404 SGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQE 449


>gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
 gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
          Length = 477

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 90/468 (19%), Positives = 156/468 (33%), Gaps = 69/468 (14%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS      D +       
Sbjct: 24  TGVSIDTRTIAPGDLFVALKAAR-DGHDFVAQALEKGAAAALVSHVPEGVDPAR------ 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +LVVD+ +  L         +    ++AVTG+ GK+S    ++ +    G         
Sbjct: 77  -LLVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKTSTKEMLRCVLGAQGKVHAAEKSY 135

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  +         + +  +  G         +      T
Sbjct: 136 NNHWGV----------PLTLARMPAD---VDFAVIEIGMNHPGEIAPLSRMARPHVAMVT 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H+   ++ +     K  +FE  L     A+I  D   S  + + A      V+  
Sbjct: 183 IVAPAHLAAFESLEGIAREKGAIFEG-LEPGGTAVINGDLPVSPILREMAQARAAHVIDF 241

Query: 271 GY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G   G    + +V                +  +   +PG     N +    +  A+G+D 
Sbjct: 242 GEAAGNHHRVTEVTICDAATVAQGRAWRSNVLYKVAVPGRHFAVNGMGVLAVAHALGLDR 301

Query: 330 ALVLEHLEKLHVVPGRFEF-----VGTNSRGGRIYVDYAHTSNS-----------LEMIL 373
           AL +  L +     GR            ++     +D A+ +N                 
Sbjct: 302 ALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNANPASLGASLEVLAAAEPR 361

Query: 374 KNIRTITSGRIIVVFGCGGD---------RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +  +T GR I   G   +         R     P MGKI     D+            
Sbjct: 362 DGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKI-----DVVHC--------- 407

Query: 425 PEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +  E+   +P    G   + +R  A       L+  DV++V  KG
Sbjct: 408 VGPLMRELWTALPYEKRGHWTEDSRAMA-ARVRHDLDAGDVVLV--KG 452


>gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
 gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
          Length = 452

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L + A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAVDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 467

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 32/443 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R +  G +FVA+ G + D H F+ QA           +          I  + P+
Sbjct: 30  ISTDTRSLPPGCLFVALQGERFDAHDFLAQAH----AGGAGGAVVRAGQALPAIPGDFPL 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V +T   L   A     +    + AV G++GK++    V  I    G +    G  + 
Sbjct: 86  YEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRGPALKTEGNLN- 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L        S     +    +  G        I+  AG  T +
Sbjct: 145 ---------NEVGVPLTLL---RLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITVV 192

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             +H++   + +    A+  LF E L  E+ A++  DD        +    G R+     
Sbjct: 193 QPEHLEGLGSLEGVAEAEGELFRE-LSPEAVAVVNLDDPLIPAQAAK--GRGKRLTFGRA 249

Query: 273 QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +   + L +V     +   +T+  +G+D+       GE    NA  A  L +A+G     
Sbjct: 250 ESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALGYSPEE 309

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFG 389
            +  LE       R   V        +   Y     S++  L  +RT+ +  GR + V G
Sbjct: 310 CVRGLESARPYARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAGGRAVAVLG 369

Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                G  +  +   +G  A   A +       PRSE   +  + +      F E G   
Sbjct: 370 DMLELGPGELEEHAALGTRAAGRAQLVAF--FGPRSEKGFQAASGLGDATAHFTEVGPL- 426

Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468
             +      L   DV++V A +G
Sbjct: 427 --VDWLTPRLKAGDVVLVKASRG 447


>gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
 gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
          Length = 464

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 169/481 (35%), Gaps = 56/481 (11%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +  + KIN VS +S+ +    IFVAI G    G+ F+ +A+ +GA A+  S A  + + 
Sbjct: 14  EKISDFKINNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGAFAVYDSEAVKIDEK 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            A          V ++ +FL  FA          ++ +TG++GK++V   +  +  +   
Sbjct: 70  YAERA-----FFVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYK 124

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G          +N +  P  +     L          + +  S  G         
Sbjct: 125 GKKTEGN--------YNNHIGLPFTL-----LRAEKDDDFIILEMGMSDFGEIDLLGQIA 171

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRAH 261
                  TN+G  H+++ +T++  F AK  +   +                K E ++   
Sbjct: 172 LPDINVITNIGESHLEFLKTKENVFLAKTEIIPHIKSTLVINGDDKYLKNVKAENIEIVR 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD------FLFPLPGEFQVYNA 315
               R      +    +   +    +     +   GK         +   + GE  V N 
Sbjct: 232 ALNLRNNEYEDKTSDFYYGDIHFDESGTNFFLKYFGKMCQSTVERNYKTNVLGEHNVLNL 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           ++A  +    G++  ++ E ++ + +   RF+ +  N     I   Y  +  S++  L+ 
Sbjct: 292 VMAIAVAKQFGMEDKIISEAVKNIELTGMRFQII-ENGNTTYINDAYNASPMSMKKSLET 350

Query: 376 IRTITSGR-IIVVFGCG---GDRDQG-KRPIMGKIALDLADIAIV--------------T 416
              I + +  I+V G     G+R+    R +   I     D   +               
Sbjct: 351 FSLIFNDKLKIMVLGDMLELGERELEIHRDLFDTIKNTNFDKLYLFGERMKSLLEKIKEN 410

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            DN   E+ E ++ +         +  +R   IR  I       VL+ A +G +   I+ 
Sbjct: 411 MDNGNLEN-ESLKNKEFEYFDEKNKIKDR---IRE-ISESKA--VLLKASRGMKLEEIIE 463

Query: 477 N 477
            
Sbjct: 464 K 464


>gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
 gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
          Length = 485

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 153/469 (32%), Gaps = 38/469 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L            +  ++ +S D+R ++ G +F AI G + DGH F+  A+A+GA A VV
Sbjct: 12  LAATGGRALDGAPDAPLSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRDALARGAGAAVV 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S A +     A      P    D     +   A+    +    I+AVTG+ GK+     +
Sbjct: 72  SQARAADLAGAGPLVAVPEAGEDPVLAAMRKLAAAARARSRARIVAVTGSVGKTGTKEAL 131

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +    G +   +   +               P+ L +  +  +          A    
Sbjct: 132 RHVLAAQGATHASVASYNNHWGV----------PLTLGRMPAASAFGVFEIGMNHAGEIA 181

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                +     +  +   +  +H                     L     A+I  D+ + 
Sbjct: 182 PLTRLVRPEVAVVTTVEPVHIEHFRALSGIADAKGEIFCG----LEPGGVAVINRDNPHF 237

Query: 254 KEVMKR--AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +     A  AG  V    +    +  ++V    +   V   V G    +    PG   
Sbjct: 238 ERLRDHALASRAGRIVSFGEHPRADVRAERVVMRPDLSIVDARVMGIPVTYQLGTPGRHT 297

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNS 368
             N+L       A+G D AL    L +L    GR E        G  + VD  Y     S
Sbjct: 298 ALNSLAVMAAVHALGADLALAALSLAQLRPPVGRGERTLLRLRDGEALLVDESYNANPAS 357

Query: 369 LEMILKNIRTITSG---RIIVVFGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           +   L  +  I      R I V G       +  +  R +   +A    D+  V      
Sbjct: 358 VRAALATLAGIEVQGRARRIAVLGDMLELGAEAARLHRDLAAAVAEHGIDLVFV-----A 412

Query: 422 SEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ++   +  G  G       + ++A+   +  +   D ++V  KG
Sbjct: 413 GPLMAELFEALPAGTRGVAAASSADLLDAV---VAEIRPGDAVMV--KG 456


>gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
 gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
          Length = 457

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 75/485 (15%), Positives = 154/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I    +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI +A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIERAFENGAAVTLSEKEVA----------NHPYILVDDVLTAFQQLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLANLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             E   ++   D   +  +                G+   L+    +  K  +T      
Sbjct: 209 MAEGSLLLAPADPIVEAYLPADKKVV-------RFGQGAELEITDLVERKDSLTFKTNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYIALQEGVSEEQIRQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                     +    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTENQDQFEDLVKQVKESLGANDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis 961-5945]
          Length = 452

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L + A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAVDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 103P14B1]
 gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis O35E]
 gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 101P30B1]
          Length = 494

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 138/434 (31%), Gaps = 35/434 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V       
Sbjct: 23  HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +
Sbjct: 78  ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133

Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              +    G  +           LT      + +  +    +     S+      L  + 
Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246
                   G   N+     + +    +   A +   ++  P              S    
Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301
                 +              +S       +    +         T++            
Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLP 313

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NAL AA    A+G+    + + L +     GR   +  +  G  I  D
Sbjct: 314 VHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRL--SMDGYHIIDD 371

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S+    K +      +I+V   +F  G   D     +  ++AL   D   +T 
Sbjct: 372 TYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-LTL 430

Query: 418 DNPRSEDPEKIRAE 431
            N  +     I  +
Sbjct: 431 GNHMAHTAAAINEQ 444


>gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 518

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 91/443 (20%), Positives = 157/443 (35%), Gaps = 32/443 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R +  G +FVA+ G + D H F+ QA           +          I  + P+
Sbjct: 81  ISTDTRSLPPGCLFVALQGERFDAHDFLAQAH----AGGAGGAVVRAGQALPAIPGDFPL 136

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V +T   L   A     +    + AV G++GK++    V  I    G +    G  + 
Sbjct: 137 YEVPDTLAALGALARFHRERFRIPVAAVGGSNGKTTTKEMVGAILATRGPALKTEGNLN- 195

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L        S     +    +  G        I+  AG  T +
Sbjct: 196 ---------NEVGVPLTLL---RLEPSHVAAVIEAGMNRPGEITRLTRVIQPQAGLITVV 243

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             +H++   + +    A+  LF E L  E+ A++  DD        +    G R+     
Sbjct: 244 QPEHLEGLGSLEGVAEAEGELFRE-LSPEAVAVVNLDDPLIPAQAAK--GRGKRLTFGRA 300

Query: 273 QGKFIHLKKVCAIHNKQ-QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           +   + L +V     +   +T+  +G+D+       GE    NA  A  L +A+G     
Sbjct: 301 ESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGAFALALALGYSPEE 360

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFG 389
            +  LE       R   V        +   Y     S++  L  +RT+ +  GR + V G
Sbjct: 361 CVRGLESARPYARRLNVVDGLHGVTVVDDCYNANPASMDAALDTLRTLVTAGGRAVAVLG 420

Query: 390 CG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                G  +  +   +G  A   A +       PRSE   +  + +      F E G   
Sbjct: 421 DMLELGPGELEEHAALGTRAAGRAQLVAF--FGPRSEKGFQAASGLGDATAHFTEVGPL- 477

Query: 447 EAIRTAIEMLNKQDVLVV-AGKG 468
             +      L   DV++V A +G
Sbjct: 478 --VDWLTPRLKAGDVVLVKASRG 498


>gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 440

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 133/396 (33%), Gaps = 46/396 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +       Q  +  +N++  DSR I+ G IF+ + G +  GH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGARY-GHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA                        L+VD+        A     K    ++
Sbjct: 54  FIEIAFDNGAIISFSEKEVEQAH-----------LLVDDNLAAFQTLAKYYLEKTKVPVI 102

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +  +   +    G  +          L  P           + 
Sbjct: 103 AVTGSNGKTTTKDMIAAVLSKKYKTYKTQGNHNN-EIGLPYTILHMPEDTEKLVLEMGMD 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G      + +   L    L G   +    +           T                
Sbjct: 162 HPGDIDFLSQLAQPELALITLIGEAHLEFMGSRENIAKGKMGITA--------------- 206

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +     A +  ++        ++   G  G+ + + K+    +K+++T      
Sbjct: 207 -----GLHGELIAPADPIINAFIPENQKISRFGLPGEDLFITKLI--EHKERLTFETNFL 259

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D     P+PG++   NA++AA + +  G+  A + + L+++ +   R E+  + +    +
Sbjct: 260 DESITIPVPGKYNATNAMLAAYVGLHYGLTEAEINKALKEVELTRNRTEWKKSKNGADLL 319

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG 391
              Y     ++ +IL+  + I    +GR I V    
Sbjct: 320 SDVYNANPTAMRLILETFQAIPKNENGRKIAVLADM 355


>gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M13399]
          Length = 452

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVDPFVFGITGSVGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC8]
          Length = 496

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 138/436 (31%), Gaps = 37/436 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V       
Sbjct: 23  HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +
Sbjct: 78  ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133

Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              +    G  +           LT      + +  +    +     S+      L  + 
Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246
                   G   N+     + +    +   A +   ++  P              S    
Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-------GKD 299
                 +              +S       +    +         T++            
Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDIDQIDS 313

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P  GE  V NAL AA    A+G+    + + L +     GR   +  +  G  I 
Sbjct: 314 LPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRL--SMDGYHII 371

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            D Y     S+    K +      +I+V   +F  G   D     +  ++AL   D   +
Sbjct: 372 DDTYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-L 430

Query: 416 TDDNPRSEDPEKIRAE 431
           T  N  +     I  +
Sbjct: 431 TLGNHMAHTAAAINEQ 446


>gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 456

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 144/389 (37%), Gaps = 27/389 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                 + VS+DSR I AG +FVA+ G   DGH ++  A          ++  +      
Sbjct: 16  GANATFSGVSTDSRSIAAGELFVALRGENFDGHDYVAAAK----ARGAAAAIVATDAAEG 71

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               + P++ V  TR  L   A+   G+    +LAVTG++GK++    +  I + +   +
Sbjct: 72  LQALSLPLVQVAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASILKAAYGEA 131

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                         +       P+ L       ++     + +  +  G   +     + 
Sbjct: 132 VLAT--------QGNFNNDIGLPLTLL---RLNATHRAAIIELGMNHPGEIAYLAGIARP 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN  R H+    + +A   A+       L +   A+  ADD ++K    R+   G
Sbjct: 181 TVALVTNAQRAHLAGMGSLEAIA-AEKGSIYTGLDETGVAVFNADDPWAKLW--RSQCRG 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R+++ G++       K      + ++++       D +  LPG+    NAL AA   +A
Sbjct: 238 LRMMTFGFEQAADVTGKFHLHGLESRLSLFAPDGQADVVLALPGQHNARNALAAATAALA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            GI    V   L     + GR +          +   Y    +S+   +  +   T G+ 
Sbjct: 298 AGISLTAVQAGLSAFRGLKGRLQRRTALHGAVLLDDTYNANPDSVRAGIDVLAA-TIGKK 356

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           I+V G  G         +G+++    D  
Sbjct: 357 ILVLGDMG--------EIGEMSAQFHDEI 377


>gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
 gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
          Length = 448

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 83/468 (17%), Positives = 167/468 (35%), Gaps = 41/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++ +D+  L+     +P   +  KI+ V+ DSR ++ G +F A+ G   DGH F+     
Sbjct: 4   ILLEDWVSLMLSDVKYPRSGK--KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKH--- 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
               A   + A  +            +++V++  + L              I+ +TG+ G
Sbjct: 59  ---AAQAGAVAAVVSKDYCGDSFGLELIIVNDPTEALKEAGENQSHLFQGTIVGITGSIG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++   F                     S  + +++LT P  + +A       ++    +
Sbjct: 116 KTTTKVFANTFLSSVYKV--------YASPKSYNSQLTVPLSLLMADG-----NEDFIIL 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  S  G  +  L  ++      TN+   H      +     A+      +L      +
Sbjct: 163 EMGVSEPGNMKDLLSIVEPEVAVITNVVDQHAMNFSDKGIQGIAE--EKGRILQNSRVQL 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D  +    +K+A ++     +   +    + K +        V IS    D DF   
Sbjct: 221 LPKDSPWYPHFIKQASSSEKFSFAFHNETADFYYKAIRK----DSVIISTPEGDIDFAIS 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            P +    N L++  L   + +    ++     L + P RFE    N     I   Y   
Sbjct: 277 FPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQLPPMRFEQSMRNGI-QVINDAYNAC 335

Query: 366 SNSLEMILKNI-RTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
             ++   L  I     SG+II++ G     G+  +    I+ K AL  A I         
Sbjct: 336 PEAMIAALDAIPHPSESGKIILILGHMAELGNYSEEGHTIVAKKALSKASIIFFI----- 390

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
            E    I+  + +G        +  + I   ++  + + D++++  KG
Sbjct: 391 GEKWLPIQHVLNYGSCEVSFHPS-AQGIEEILKKVVQQGDIVLL--KG 435


>gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 470

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 144/449 (32%), Gaps = 38/449 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR +Q   +F+A+ G   DGH  +             ++   +      ++ + 
Sbjct: 27  RGVSIDSRTVQPSDLFIALEGPNHDGHDHVAS------ALAGGAAGALVHKLPKGVQDDA 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++V +T   L         +   +I+AVTG+ GK+     +       G++ + +G  
Sbjct: 81  PLILVRDTMTALQDLGVASRARSSAHIVAVTGSVGKTGSKEMLALALSDQGVTHYSLGSF 140

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  +           +  +  G     +  ++      T
Sbjct: 141 NNHWGV----------PLSLARMPAGSR---YAIFEIGMNHPGEITPLVRMVRPHVAVIT 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H+++  +      AK  +F+ + P     +   +  ++      A      + S 
Sbjct: 188 TVEMVHMEFFASTAEIAAAKAEIFDGIEPGGMAVLPRDNAHFAFLAEAAAKAGITHIRSF 247

Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L           V   +  +   +   + G     N+L       A+G D 
Sbjct: 248 GNHIESTARLLDCAVDPQSTAVFALLTDQPLSYRIGVAGRQWATNSLAVLLAVEALGADV 307

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT-----SNSLEMILKNIRTITSGR 383
            L    L  +    GR +        G    +D ++        +    L +++    GR
Sbjct: 308 NLAAMALAAMSAPKGRGQRRRVEMDGGSFDLIDESYNASPVSMKAAIAALASVKPAKGGR 367

Query: 384 IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            I V G     G +       M +         + T     +   + +  +   G     
Sbjct: 368 RIAVLGDMLELGPQGPMLHASMAETVERWNIDLVFTAGILTAHLHDALAEQRRGG----- 422

Query: 441 EKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
              +  +A+   ++      DV++V  KG
Sbjct: 423 HAAD-SDAVSALVKAAVRPGDVVMV--KG 448


>gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 111/348 (31%), Gaps = 29/348 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R+I  G +F A+ G   +G+ F  +A+ QGA   VV           T+  +  I
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE---------TMDQDIRI 63

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +  + L   A          +  +TG++GK++    +  +      +    G  + 
Sbjct: 64  IQVSDVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNN 123

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                      +     +A      + Q    +    S   +               TN 
Sbjct: 124 HVGVPLTILSMSKD-TEIAIIEMGANHQLEIALLASISQPTIGY------------ITNY 170

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L++     ++  ++  DD+   E  K  +  G      G 
Sbjct: 171 GKAHMEGFGGLEGIIKGKSELYDFAFEHQTQVMVNFDDSLQSEKTKDHNRFGFGHSKGGV 230

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   K  + +    + +  +G        L G F   N   A  L +   +    +
Sbjct: 231 T------WKSTSDNEFASIQLETKGNSTSIKSQLSGHFNESNLAAATTLGLHFDVPLKDI 284

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              LE       R E          +   Y     S+ + ++N     
Sbjct: 285 KTALEAYVPSMNRVE-WRKTQYNAVLMDAYNANPTSMSLSIQNFGKWH 331


>gi|145635583|ref|ZP_01791281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267145|gb|EDK07151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 105

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +  S +  +     N P++      + LS  A     + 
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFMIRP 102


>gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. WH 7803]
 gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 7803]
          Length = 471

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 142/452 (31%), Gaps = 44/452 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G  F+ + G + DGH F+  A+ +GA+A  V+S  +       +      
Sbjct: 32  VCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVERGAQAAFVASDCAH-----AVPDGLLH 86

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V +T +     A+    +    ++AVTG++GK++    ++              P   
Sbjct: 87  WKVADTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTTRELIRSALA----------PLGD 136

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +   +N      P+ L  A    ++  V      A     +  RL        +    
Sbjct: 137 VQASDSNNNNDIGVPLTLLGAHRSHAAVVVEMGMRGAG----EIERLSCCAEPEIAVITN 192

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
                      +A   +        L      +I A DA  ++ + R        +S+  
Sbjct: 193 IGTAHIGRLGSRAAIASAKCEITAALSPRGVVVIPAGDALLEDALSRCWTGRILRVSLEG 252

Query: 273 QGKF----------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                           L     +   Q    S+  +   F  PL G     N ++A  + 
Sbjct: 253 DEPEGGPDVSGLTSAALPAPDLVGVFQPEDQSLAFQGLRFRCPLEGRHNARNFMLALAVA 312

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIRTITS 381
             + +    +      +             S GG   +D  + ++    +    +     
Sbjct: 313 SELEVPLHSLEAMDVAMPGG-----RNKRLSMGGVSLLDETYNASPEAVLAALELLAHQP 367

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           GR   V G     G R       + + A+DL  D  +V        D   +       + 
Sbjct: 368 GRRFAVLGTMLELGSRSVELHRRVAQRAVDLKLDGLVVVA----GGDEGDVMEATACSLS 423

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
            F       +A       L   D +++ A +G
Sbjct: 424 RFTRVQTPEDAALPLRGWLKPGDTVLLKASRG 455


>gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
 gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
          Length = 494

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 138/434 (31%), Gaps = 35/434 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V       
Sbjct: 23  HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +
Sbjct: 78  ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133

Query: 140 SGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
              +    G  +           LT      + +  +    +     S+      L  + 
Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNI 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAII 246
                   G   N+     + +    +   A +   ++  P              S    
Sbjct: 194 GTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQFTKLHLSFGER 253

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301
                 +              +S       +    +         T++            
Sbjct: 254 AVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLP 313

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P  GE  V NAL AA    A+G+    + + L +     GR   +  +  G  I  D
Sbjct: 314 VHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRL--SMDGYHIIDD 371

Query: 362 -YAHTSNSLEMILKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            Y     S+    K +      +I+V   +F  G   D     +  ++AL   D   +T 
Sbjct: 372 TYNANPTSMLAAAKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-LTL 430

Query: 418 DNPRSEDPEKIRAE 431
            N  +     I  +
Sbjct: 431 GNHMAHTAAAINEQ 444


>gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 447

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/472 (16%), Positives = 169/472 (35%), Gaps = 44/472 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+  LS       ++KI   + DS+ +Q G +F A+ GN  DGH F+  
Sbjct: 1   MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKH 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                  A   + A  +            ++ VD+T+  L    S         ++ +TG
Sbjct: 59  ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++   F + I      +          S  + +++LT P  + +A+       + V
Sbjct: 113 SVGKTTTKEFSKTILSSIYKTH--------ASPKSYNSQLTVPLSLLMAEG-----DEDV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  Q     ++++      +   +  +           ++    +L K  
Sbjct: 160 MILEMGVSEPGNMQDL---LRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYILQKSK 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  D  Y  ++   +  A     S          K +     +  V I    +++  
Sbjct: 217 LQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAIS----RDSVVIQTPEENYCL 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                 +    N L+A  L   + +    V+  L +L + P RFE    + R G   ++ 
Sbjct: 273 PIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE---HSMRNGMQVIND 329

Query: 363 AHT--SNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
           A+     ++   L  +      G+II++ G     G   +    ++ + A    D+    
Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +  +    + +       +  F    +  + ++         DV+++  KG
Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILL--KG 434


>gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
 gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
          Length = 243

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 17/190 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 1   MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDETLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++V   ++ I   +       G          +  +  R T    + +  +   
Sbjct: 108 TGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 167

Query: 177 LSSQGVTHVS 186
                    +
Sbjct: 168 CRIIERFTWN 177


>gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 134

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 18/151 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +     VS+DSR I+ G +FVA+ G + DGH ++
Sbjct: 1   MTFSELVVPLDARLVGG---------DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYL 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH-PENILA 119
            Q  A+GA   +V                 P LVV +TRK L+   +          + A
Sbjct: 52  DQVAAKGAVGALVEREVQGAA--------LPQLVVLDTRKALAQLGAMNRNAFVDRPVAA 103

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           VTG+SGK++V   +  I +  G      G  
Sbjct: 104 VTGSSGKTTVKEMLASILRTRGPVLATRGHL 134


>gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes shahii WAL 8301]
          Length = 417

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 119/382 (31%), Gaps = 51/382 (13%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R I+   IF A+ G+  DG+ F+ +A+ +GA   V                   I
Sbjct: 14  ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGAAYAVSDDPQVAASDERQR-----I 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+T K L   A          ILA++G++GK++    V ++           G  + 
Sbjct: 69  VLVDDTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLAERFEVYATRGNLNN 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L    +         V + AS+ G         +   G  TN+
Sbjct: 129 H----------IGVPLTLL---AMTRDTEFGVVEMGASACGELALLASVAEPNYGILTNI 175

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++     +     K  LF+ L      A + ADD     +     +      S   
Sbjct: 176 GLAHLEGFGGPEGVRRGKGELFDFLAANGGHAFVPADDEILTGMAAERDSLADEYYSASL 235

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                +  +                                N   A  +     +    +
Sbjct: 236 ADGIENHLEGSYNRF--------------------------NIAAAVAVGRYFDVPDERI 269

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI---RTITSGRIIVVFG 389
              +        R + +GT+         Y    +S+   + N          R +++ G
Sbjct: 270 RHAIASYVPDNNRSQRIGTSRNTLVADC-YNANPSSMRASVGNFLAEPLEERQRRVLILG 328

Query: 390 CG---GDRDQGKRPIMGKIALD 408
                GD  + +   + ++A  
Sbjct: 329 DMLELGDWSEREHAAIIEMAAQ 350


>gi|145630232|ref|ZP_01786014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984513|gb|EDJ91936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 105

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 48/99 (48%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +  S +  +     N P++      + LS  A     + 
Sbjct: 64  TELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFMIRP 102


>gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 126/384 (32%), Gaps = 26/384 (6%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ +S D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 20  DWQVSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSR------IPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +  +L+VD+ +  L         +    ++AVTG+ GK+S    +  +    G +   
Sbjct: 73  GEDGRLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHAS 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +   +               P+ LA+         +               +      + 
Sbjct: 133 VASYNNHWGV----------PLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMV 182

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +   +  +  D          A M   E        A I   D      + RA   G R
Sbjct: 183 TTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNADIAEAD------ILRAAARGAR 236

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            LS G   +   L  V                   F     G     NAL A   C A+G
Sbjct: 237 QLSFGRAAQDYRLTGVEVADGMTHARADTPAGPVSFTLQSAGTHFAMNALGALACCDALG 296

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGR 383
            D+   L+ LE+     GR      +  GG        Y     S+   L+ +      R
Sbjct: 297 ADAGQSLQGLERWTPYKGRGARETISLAGGPVTLFDDSYNANPTSVGAALEVLAGTPGTR 356

Query: 384 IIVVFGCGGDRDQGKRPIMGKIAL 407
            +   G   +    + P+   +A 
Sbjct: 357 RVAFLGDMKELGPEELPLHAGLAA 380


>gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis CO72]
          Length = 494

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 137/422 (32%), Gaps = 35/422 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +D+R IQAG +F+AI G + D H FI  A  QGA A +V            +  + P 
Sbjct: 35  IVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER---------VVDCDMPQ 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +   +    G  +
Sbjct: 86  LLVADTKLALGDLGRFRREAHPDLTVIALTGSSGKTTTKEMIGAILSQIAPTLITRGNLN 145

Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                      LT      + +  +    +     S+      L  +         G   
Sbjct: 146 NDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPDVALILNIGTAHLGEFGGRA 205

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLP------------KESPAIIYADDAYSKEVMK 258
           N+     + +    +   A +   ++  P              S          +     
Sbjct: 206 NIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASKFTNLYLSFGERAVPIEQAGLEAT 265

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFLFPLPGEFQVY 313
                    +S       +    +         T++               P  GE  V 
Sbjct: 266 DQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDIDQIDSLPVHLPFIGEHNVA 325

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           NAL AA    A+G+    + + L +     GR   +  +  G  I  D Y     S+   
Sbjct: 326 NALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLPMD--GYCIIDDTYNANPTSMLAA 383

Query: 373 LKNIRTITSGRIIV---VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            K +      +I+V   +F  G   D     +  ++AL   D   +T  N  +     I 
Sbjct: 384 AKVLEAELDTKILVLGDIFELGDAADDEHTKLGHQLALLEIDHV-LTLGNHMAHTAAAIN 442

Query: 430 AE 431
            +
Sbjct: 443 EQ 444


>gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 477

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 94/471 (19%), Positives = 160/471 (33%), Gaps = 73/471 (15%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS D+R +Q G +FVA+   + DGH F+ QA+  GA A +V            +  + 
Sbjct: 24  NGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQALDSGAGAALV------THVPEGVGEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           P+L+V++ +  L         +      + AVTG+ GK+S    +  I    G +   + 
Sbjct: 77  PLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVGKTSTKEMLLAIFGDQGKAHASVD 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +               P+ LA+            + +  +  G         +  A  
Sbjct: 137 SYNNHWGV----------PLTLARMPRD---TDYAVIEIGMNHPGEIAPLAKQAQPHAAM 183

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+   H++  +   A    K  +F+ +      A+I AD  +S  V+ +A   G R  
Sbjct: 184 VTNVAAVHLEAFKDVAAIAVEKASIFDGM-EPGGVAVINADHDHSDIVLDKALERGLRET 242

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +G    L  V            V G    +    PG     NAL A  +  A+G D
Sbjct: 243 TFGRKGHHYTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALGALAVAEALGAD 302

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-------VDYAHTSNSLEM---------I 372
            AL ++ L +     GR             +         Y     S+           +
Sbjct: 303 RALAVQSLGRWSPYVGRGVREQILLDPVDNHLTLELIDDSYNANPTSMAAALEVLAASEV 362

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTD-------DNP- 420
             +I  ++ GR I   G   +       +   +A   A    D+            DN  
Sbjct: 363 THDIGRVSKGRRIAFVGDMKELGPEALALHAGLADLEATRALDVVHCVGPLMKAFYDNLP 422

Query: 421 ---RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              R  D  +   E++ G+                   L+  DV+++  KG
Sbjct: 423 EHQRG-DWTETAEEMLQGLR----------------ARLDSGDVVLI--KG 454


>gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA1]
          Length = 485

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 134/442 (30%), Gaps = 59/442 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P
Sbjct: 27  DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            LVVD+ +  LS  A  +     +     +A+TG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A     +       +     G        +      
Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A      E L  +  A++ A D     +  R         
Sbjct: 185 VLNVGNAHLGEFGSREVIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNA------- 315
                 +     +V A             T++    +  +  P+       +        
Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAA 303

Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA   +A+  D                +     R +          +   Y    +S+
Sbjct: 304 TAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451
                G    I  G+  E I  
Sbjct: 410 LAAHAGFDVIIAVGDEAENIAE 431


>gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
 gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
          Length = 455

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 132/386 (34%), Gaps = 25/386 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      L + +    +   +  ++ + +D+R +  G +F+A+VG++ DGH F+ QA A
Sbjct: 1   MIPVTLSTLADAVGGT-LNGADLMVSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQAEA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A+VVS                P ++V++T   L    + L  +     LA+TG+ G
Sbjct: 60  SGAAALVVSRPVDSA---------LPQILVEDTLLALGQMGAWLRRELAPRCLAITGSVG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+SV      I  + G +    G  +            TP                   +
Sbjct: 111 KTSVKEMTAAIFAQVGPTLATRGNLNNTIGVPMTLLELTPE-------------HRFAVI 157

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A+ H  +      + L   +  N  R                     E L +   AI
Sbjct: 158 ELGAN-HAGEIRYTSSLALPHAAVINNIRGAHLEGFGGIEGVARAKSEIYEHLGEAGTAI 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD ++  +++R  +      S                       +     +     P
Sbjct: 217 VNLDDEWAPWLLERLGDQNRFTYSSRGPADLWASALSRDADGCYHFLLHRGEAEVLVRLP 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG  QV NAL AA L     +    +   L +   V GR +    +     I   Y   
Sbjct: 277 LPGRHQVDNALAAAALASTAELSLEQIASGLAQAPTVAGRTQMTALSGEVMLIDDSYNAN 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG 391
           + S    +  +     G  ++VFG  
Sbjct: 337 AASTMAAIDLMAE-RDGSSLLVFGDM 361


>gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M0579]
          Length = 463

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 26  LPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 73

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 74  AAVVVSREDCAALKDALKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAV 133

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +    +   +  T   ++           P+ L              + +  +  G   
Sbjct: 134 LRHRFGNEAVLATTGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 184 VLTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 243

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 244 KTATLNLNTR--TFGVDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAA 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 302 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 362 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 408


>gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
 gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
          Length = 457

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 155/485 (31%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G   DGH 
Sbjct: 1   MKL------TIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGA-LDGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLTPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----D 411
              Y     ++++IL+    I     G+ I V     +       +  +I L L+    D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 TVIF-----YGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029]
 gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
 gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029]
 gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
          Length = 447

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/472 (16%), Positives = 168/472 (35%), Gaps = 44/472 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++ ++ +D+  L+  LS       ++KI   + DS+ +Q G +F A+ GN  DGH F+  
Sbjct: 1   MRAMLLEDWVSLM--LSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKH 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                  A   + A  +            ++ VD+T+  L    S         ++ +TG
Sbjct: 59  ------AATAGAVAAVVSHDYQGDSFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++   F + I      +          S  + +++LT P  + +A+       + V
Sbjct: 113 SVGKTTTKEFSKTILSSIYKTH--------ASPKSYNSQLTVPLSLLMAEG-----DEDV 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +  S  G  Q     ++++      +   +  +           ++    +L K  
Sbjct: 160 MILEMGVSEPGNMQDL---LRIVQPEIAVITHINDQHAMHFPQGIQEILKEKSYILQKSK 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             ++  D  Y  ++   +  A     S          K +        V I    +++  
Sbjct: 217 LQLLPKDSPYYLDLRSCSPTAEKFSFSFNDPLADFCYKAISG----DSVVIQTPEENYCL 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                 +    N L+A  L   + +    V+  L +L + P RFE    + R G   ++ 
Sbjct: 273 PIAFSYKPAYTNLLIAVALSWILEVPEEGVIRSLPELKLPPMRFE---HSMRNGMQVIND 329

Query: 363 AHT--SNSLEMILKNIR-TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVT 416
           A+     ++   L  +      G+II++ G     G   +    ++ + A    D+    
Sbjct: 330 AYNACPEAMIAALDALPLPSDGGKIILILGHMAELGRYSEEGHALVAEKAASRGDMIFFI 389

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +  +    + +       +  F    +  + ++         DV+++  KG
Sbjct: 390 GE--KWIPVQSVLKSYSCEVSFFSSAQDVKDILKQV---ARYGDVILL--KG 434


>gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 495

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 139/427 (32%), Gaps = 47/427 (11%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           P    +  +  VS+D+R ++ G +FVA+ G+  DGH ++ +A  +GA A +VS       
Sbjct: 25  PALPDDTPLAGVSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRPVEASG 84

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH---PENILAVTGTSGKSSVASFVQQICQ 138
                    P+L+V +TR  L   A  +  K     + ++ +TGT+GK++    +  +  
Sbjct: 85  ---------PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLS 135

Query: 139 RSGLSSFQ----IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV------- 187
           R G               +     +        + L   +            +       
Sbjct: 136 REGRRPHTNRQNWNNEIGVPRTLWEWGEKDGDAV-LEVGIRKPGDMEYLSSVLVSDVSIV 194

Query: 188 -EASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                  L+    ++G+     +  N  R            F            +    +
Sbjct: 195 TSVGEGHLETLGSIEGVWKEKSNLLNWVRPGGGIVLPLDLLFRYPASPVFRERQRRFFFV 254

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D        R+   G  +LS   + +      +           +   + F +  P
Sbjct: 255 ALDPDPGDSARASRSVPEGSTILSGTLRKEEGGTWILSG---------TTGPESFSWSMP 305

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            P      +AL+A     A+G+  +   +HLEK   +PGR +   T      +   Y   
Sbjct: 306 SPSSILAMDALLALAAGNALGVSLSEGAKHLEKFAPLPGRMQEKRTPEGALLLLDHYNSN 365

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-SED 424
             SL+   +    +      +  G             GK+   L D+  + +D+ R    
Sbjct: 366 PLSLQGAFQWCTEVWKKEASLAGGGP-----------GKLLAVLGDMLELGEDSSRLHRK 414

Query: 425 PEKIRAE 431
              I AE
Sbjct: 415 AGLIAAE 421


>gi|330995897|ref|ZP_08319793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574428|gb|EGG55999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 432

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 119/361 (32%), Gaps = 22/361 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR    G +F A+ G+  +G+ F  QA+ QG    +V  A         +  +   
Sbjct: 16  VTTDSRKCPQGALFFALKGDSFNGNAFAAQALEQGCVYAIVDEA------EYAVGDDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++    L   A     +    ++ VTGT+GK++       +  +     +  G  + 
Sbjct: 70  ILVEDVLATLQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTASVLSQKYNVLYTQGNLNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +     T                 +  +   AS  G  +   + +    G  TN+
Sbjct: 130 HIGVPKTLLELTSE-------------HTIAVIETGASHPGEIKALAEIVDPDFGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++   + +     K  L++ L  K     I  D    K +    H           
Sbjct: 177 GMAHLEGFGSFEGVVRTKGELYDYLRAKHGTVFINHDSEDLKRIAGGLHQICYGSPCDEV 236

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 + +       +      E ++      L G + + N L AA +    G++   V
Sbjct: 237 LSVEGEVLECAPFLKFRWRPAGGEWQEV--QTGLIGAYNMQNLLAAATIGRTFGVEVDAV 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              L        R +          +   Y     S+   ++N R +   R + + G  G
Sbjct: 295 NRALAAYEPKNNRSQLT-ETDDNKLLVDAYNANPTSMRAAIENFRDMKVERRMAILGDMG 353

Query: 393 D 393
           +
Sbjct: 354 E 354


>gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 7169]
 gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC1]
          Length = 494

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 10/147 (6%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V       
Sbjct: 23  HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +
Sbjct: 78  ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPS 166
              +    G  +            T  
Sbjct: 134 IAPTLITRGNLNNDLGVPMMLLELTDE 160


>gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 433

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 128/378 (33%), Gaps = 27/378 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +  +S+ ++ G IF A+ GN  DG+ F  +AI+ GA   +V +            S+ 
Sbjct: 14  SGIEINSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIVDN-------IKYSFSHK 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            I  V N    L   A     +     I+A+TG++GK++       I  +          
Sbjct: 67  NIFFVKNALSSLQELALYHRLQLNRVPIIAITGSNGKTTTKELTTAILSKKYEVVHST-- 124

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   ++       P+ L    S   +  ++ V + A+     Q     I    G  
Sbjct: 125 -------EKNFNNHIGIPLTLL---SMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYI 174

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN G+ H++  +  +     K+ L+  L   +    +  DD      ++  H+ G     
Sbjct: 175 TNFGKAHLEGFKNIKGVIRGKLELYNFLKKNKKKVFVNGDDP-----IQLIHSLGIDRYI 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
              +        +     K  +   +  KD   +  L G + +YN   A  +     +  
Sbjct: 230 FSERINSDVDVPIKYFWKKTDLKSVLCIKDMQIVSSLVGSYNLYNIASAITIGNYFKVPL 289

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + + +E       R + +   +    +   Y    +S+   L     I  G  I + G
Sbjct: 290 KKIKKAVEDYIPNNYRSQILEKENVKIIVDC-YNANPSSMIETLTFFNKI-QGNKIAILG 347

Query: 390 CGGDRDQGKRPIMGKIAL 407
              +     +    KI  
Sbjct: 348 DMLELGSFSKKEHAKIIS 365


>gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           dadantii Ech703]
 gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech703]
          Length = 453

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 133/393 (33%), Gaps = 27/393 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
                I EVS+D+R + AG +FVA+ G   D H +          A  V+          
Sbjct: 19  GENLTIGEVSTDTRKLTAGCLFVALRGENFDAHDY---------AADAVAGGAGALVVCK 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +    P LVV +TR  L   A+ +  +    ++A+TG+SGK+SV      I ++ G   
Sbjct: 70  RLPIEVPQLVVADTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMTASILRQCGNVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           +  G  +             P                   + + A+  G   +  + +K 
Sbjct: 130 YTAGNFNNDIGVPLTLLRLAPE-------------HDFAVIELGANHIGEIAYTTELVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      AK  +F+ L       I    +  ++     A    
Sbjct: 177 ETALVNNIAAAHLEGFGSLAGVAQAKGEIFDGLPENGVGIINADSNDIARWQPSLAGKTL 236

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R  S            V A       T+       D   PLPG   + NAL A  L I+
Sbjct: 237 WRFSSQPASSADFLASDVRAADLGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAIS 296

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G     V   L +L  VPGR   +        +   Y     S+    + +  +   ++
Sbjct: 297 VGASLEAVKLGLSRLQAVPGRLFPILLAPGKRLLDDSYNANVGSMTAAAQVLAEMPGYQV 356

Query: 385 IVV--FGCGGDRDQGKRPIMGKIALDLA--DIA 413
           +VV      G   +     +G  A  LA  D  
Sbjct: 357 MVVGDMAELGQEAEACHRQVG-AAAKLAGIDKV 388


>gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 456

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 144/419 (34%), Gaps = 34/419 (8%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           +  +++  +  +     + +    +S DSR I    +F+AI G   DGH F+ + I +G 
Sbjct: 7   EVNKILGNIKNWDNLTNQFQSFKNISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +A+V+      +     +    P   V +T +     A     K    ++ +TG+ GK++
Sbjct: 67  KAVVI-----KEGMQNLLPYKFPFWTVPDTLEAFQKLALFKRRKLNIPVVGITGSVGKTT 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               + ++ ++ G         +          LT                     + +E
Sbjct: 122 TKEMMGEVLKQLGKIKLSQLNFN----NEIGVGLTILDS-----------DFKDKTLILE 166

Query: 189 ASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               GL Q  +     +      TN+G  HI    +++    AK  + + L PK    I 
Sbjct: 167 MGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKENITYAKCEITKHLNPKGVVIIP 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D    + + +  +    +V  +    K   L K        +   SV  +D  F    
Sbjct: 227 ANDLFLEETLKRNWNGRIIKVDLLDKNQKAQSLNKTNLQGFYNRSNNSVIIEDKIFEISF 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G    +N L    +   +GI       +      + GR + + +          Y  + 
Sbjct: 287 QGFHNAFNFLFVYAVAKELGIKFKDT--NKFNFVSLNGRNKILKSKKTTIYDET-YNASP 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADI---AIVTDDN 419
            S++  + N+         ++FG     G++ Q     + ++    +DI     + D N
Sbjct: 344 ESVKACINNLLD-NPNNHFLIFGSMQELGNKSQKYHKDLFELIDR-SDIKKCIFICDKN 400


>gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
 gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
          Length = 445

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 157/439 (35%), Gaps = 33/439 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
               + DSR +Q+G +F+A+    +DGH +I  A  +GA   +V    +  D    I + 
Sbjct: 27  FAGFAIDSRRVQSGELFIALATASDDGHAYIADACRKGAAGALVHQLPA--DHQQLIDAG 84

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +LVV +T   L++ A+    +    ++AVTG+SGK++V++ ++ +           G 
Sbjct: 85  HALLVVPDTLAALAILAANWRQQWEFPVVAVTGSSGKTTVSACLRTLF------PTSAGT 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
           T   ++          +P   A          +    +  S  G      + ++   G  
Sbjct: 139 TGNYNNHIGLPLSMLGTPADAA----------IGVFELGMSGSGEIDALAELLQPQIGLI 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+G  HI    +  A   AK+ L           +            +R  +      +
Sbjct: 189 TNVGSAHIGKLGSFAAILEAKLELAR---HCSCLIVDGDGQELLDRARQRHQDVLSVGFT 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G Q     ++         ++             P   +F V N+L+A    + +G+D 
Sbjct: 246 AGCQVFPQSMELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKNSLLAIAAGLKLGLDQ 305

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A +   L ++ + P R+E              Y     SL   L++       R+ V+  
Sbjct: 306 AALQAGLRRVQLPPLRWELHRRGGNTYIFDC-YNSNPGSLRAALEDFSHYPGYRVAVLGE 364

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                   +R      +    D+ +   D  R    +++ A+I    P   +   R+   
Sbjct: 365 MRELGAFSEREHRKVASAINCDLVLTYGDEARFL-ADELGADIATHCPTLEDVVARLANC 423

Query: 450 RTAIEMLNKQDVLVVAGKG 468
           + A        V++V  KG
Sbjct: 424 QNA--------VVLV--KG 432


>gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis
           glossinidius str. 'morsitans']
 gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 455

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 164/455 (36%), Gaps = 43/455 (9%)

Query: 25  WRERKINEVSSDSR--HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
             +  I  V +DSR        +FVA+ G + D H F  QA+A GA A++V+        
Sbjct: 19  GDDCTILSVVTDSRAPSAAESSVFVALKGEQFDAHDFAEQAVAAGAAALLVNR------- 71

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              +  + P LVV +TR+ L    + +  + P  ++A+TG+SGK+SV      I ++ G 
Sbjct: 72  --RLPLDVPQLVVADTRRALGQLGAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGR 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +            TP             +     + + A+  G      D +
Sbjct: 130 VLATEGNFNNDIGVPLTLLRLTP-------------AHDFAVIELGANHLGEIAWTTDLV 176

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       NL   H+    +      AK  +F  L       +      +        H 
Sbjct: 177 RPETALVNNLSAAHLAGFGSLSGVAQAKGEIFAGLPANGCGILNADSHDWPHWQQVLGHK 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A  R       G       + +     + T+     +     PLPG+  V NAL A  L 
Sbjct: 237 AVWRFAVQAAGGVDFFASDIESDQQGVRFTLHSPLDECPVRLPLPGKHNVANALAACALA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +++G +   V   L +L  VPGR   +   +    +   Y     S+    + +  +   
Sbjct: 297 LSVGAELPAVAAGLAQLQAVPGRLFPIALGAGRLMLDDSYNANVGSMTAAAQVLAEMPGY 356

Query: 383 RIIVV--FGCGGDRDQGKRPIMGK-IALDLADIA--------IVTDDNPRSEDPEKI--- 428
           R++VV      G+        +G+ +AL   D          ++ + + R E  +     
Sbjct: 357 RVMVVGDMAELGEEAAECHRQVGEAVALAGIDKVLSVGSLSHLIGEASGRGEHFQDKTAL 416

Query: 429 ---RAEII--HGIPGFIEKGNRIEAIRTAIEMLNK 458
               A+++    +   + KG+R  A+   +  L +
Sbjct: 417 TARLAQLLSEQAVMTVLVKGSRSAAMEQVVRALQE 451


>gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M6190]
          Length = 436

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 129/401 (32%), Gaps = 34/401 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 6   KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 53

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L   A          +  +TG+ GK++V   +  + +R    
Sbjct: 54  EDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGD 113

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              +      ++           P+ L              + +  +  G         K
Sbjct: 114 DAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 163

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A    N  R H+                  + L  +  A+I  +DA          N 
Sbjct: 164 PNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNL 223

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L +
Sbjct: 224 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALAL 281

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+    V E L+    + GR            I   Y    +S++  +  +  + + R
Sbjct: 282 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAPR 341

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
            I V G  G+  + +   M       A     + A    DN
Sbjct: 342 -IFVMGDMGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDN 381


>gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 638R]
          Length = 432

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 168/453 (37%), Gaps = 36/453 (7%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS     + +  +  V++DSR+  AG +F+A+ G   +G+ F  QA+  G    +V  A
Sbjct: 2   KLSALYQIFLDCAV--VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA 59

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               +      +N  I++VDN  + L   A+    +    ++ +TGT+GK++    +  +
Sbjct: 60  EYAPE------NNRHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +S    +  G  +               P+ L +  +      +  + + A+  G  +
Sbjct: 114 LSKSHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HELAVIEMGANHPGEIK 160

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             +   +   G  TN+G+ H++   + +     K  L++ L  KE   +    D  +  +
Sbjct: 161 FLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHD--NAYL 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M  AH+                     + +   +     +G        L GE+   NAL
Sbjct: 219 MDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNAL 278

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +    G+++  + E L        R +   T      I   Y     S+   L+N 
Sbjct: 279 AAVTIGRFFGVEAGKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T  + +++ G         R +  + A +   I     +    E    +  +     
Sbjct: 338 RNMTVEKKMLILG-------DMRELGTESAAEHRKIVDFLQE-CSFEKVLLVGEQFTATH 389

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
           P +    N  E I+  ++    +D  +++  KG
Sbjct: 390 PPYHTYANAQEVIKE-LQTEKPKDYTILI--KG 419


>gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
          Length = 457

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 159/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI +A   GA   +     +          N P ++VD+        ++    K   ++ 
Sbjct: 54  FIERAFENGAAVTLSEKKVA----------NHPYILVDDVLTAFQTLSAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSITYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MDSGSLLLAPAD----TIVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I I        ED  ++                    ++    + ++   E L   D ++
Sbjct: 382 IVIF-----YGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|149007558|ref|ZP_01831193.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
 gi|147760917|gb|EDK67887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
          Length = 122

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-AIVTDDNPRSEDPEKIRAEII 433
            + T  +G+I +V G  G++ + +R   G +     +I   +T D+P  EDP  I  EI 
Sbjct: 1   MVETHQTGKIALVLGSTGNKGESRRKDFGLLLNQHPEIQVFLTADDPNYEDPMAIADEIS 60

Query: 434 HGIPGFIE-KGNRIEAIRTAIEMLNKQ-DVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
             I   +E   +R EAI+ A+ + N + D +++AGKG +   I+   ++    D  +   
Sbjct: 61  SYINHPVEKIADRQEAIKAAMAITNHELDAVIIAGKGADCYQIIQGKKESYPGDTAVAEN 120

Query: 492 IL 493
            L
Sbjct: 121 YL 122


>gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA1]
 gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA1]
 gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA2]
 gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA2]
 gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA1]
 gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA1]
 gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA2]
 gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA1]
 gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA2]
 gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA1]
 gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA2]
 gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL086PA1]
 gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA4]
 gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA1]
 gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA3]
 gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA3]
 gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL067PA1]
 gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA1]
 gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA1]
 gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA2]
 gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA1]
 gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA1]
 gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA2]
 gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA2]
 gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA3]
 gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL078PA1]
 gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA2]
 gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA3]
 gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA1]
 gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA2]
 gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA1]
 gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA2]
 gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL097PA1]
 gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA3]
 gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA2]
 gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA3]
 gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL092PA1]
 gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA2]
 gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA1]
 gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL020PA1]
 gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA2]
 gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes 266]
          Length = 485

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 134/442 (30%), Gaps = 59/442 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P
Sbjct: 27  DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            LVVD+ +  LS  A  +     +     +A+TG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A     +       +     G        +      
Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A      E L  +  A++ A D     +  R         
Sbjct: 185 VLNVGNAHLGEFGSREVIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNA------- 315
                 +     +V A             T++    +  +  P+       +        
Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAA 303

Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA   +A+  D                +     R +          +   Y    +S+
Sbjct: 304 TAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLTAMGH--------VLATRRVRDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451
                G    I  G+  E I  
Sbjct: 410 LAAHAGFDVIIAVGDEAENIAE 431


>gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 447

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 86/470 (18%), Positives = 149/470 (31%), Gaps = 41/470 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+   +           +      D R  + G +FVA  G   DGH +  QA 
Sbjct: 1   MIPLSLGEIAAVVGGTVAGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQAG 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
             GA A + S                P +VV++ +  L   A+ +  +  +   ++ +TG
Sbjct: 61  RAGAVATLGSRPTP-----------LPTVVVEDAQSALQALAAHVVARLRDGLTVVGLTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +   +  +   IG  +             P+  +LA           
Sbjct: 110 SQGKTSTKDLLAAVLSSAAPTIATIGSLNNELGVPLTMLRADPATRFLA----------- 158

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G        +        N+G+ H+    +++A    K  L  + L    
Sbjct: 159 --LEMGARHIGDIAELTGLVAPDIAVVLNVGQAHLGEFGSREAIARTKGEL-VQGLAPGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +             V        L        +   T+         
Sbjct: 216 TAVLGADDPRVVAMRSLTDGPVLTFGRV-EHADVRVLDLALDRLGRPSFTLRTADASAPV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G  Q  NA  AA   +A G+   +    L    +   R E          +   Y
Sbjct: 275 TLPLVGGHQALNASAAAAAGLAAGVPLDVAAAALATASLSQWRMELRDLACGATLLNDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
               +S    L  +  I  GR I V G     GD  + +   +G+ A   AD+ +     
Sbjct: 335 NANPDSTRAALDALAAIEGGRRIAVLGEMRELGDGSEAEHRAVGEYAASRADVVVAV--- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
              E    I      G    +   +   A+      L   +V++V A +G
Sbjct: 392 --GEAARPIAD--GAG-ERVVALADNNAAVDWLRGHLAAGEVVLVKASRG 436


>gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis 8013]
          Length = 452

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 130/408 (31%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S+   +  +
Sbjct: 291 AAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMRAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 457

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/482 (15%), Positives = 158/482 (32%), Gaps = 57/482 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +      +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLAPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    +    + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQDLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I    +       ++ +++             ++    + ++   E L   D +++  
Sbjct: 382 TVIFYGQDIAQ--LAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILL-- 437

Query: 467 KG 468
           KG
Sbjct: 438 KG 439


>gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 478

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 113/315 (35%), Gaps = 21/315 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +  G +FVA+   + DGH F+  A+ +GA A +V            +  + 
Sbjct: 24  DGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMALEKGAGAALV------THVPEGVAEDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V++  K L    +    +    ++AVTG+ GK+S    +  I    G +   +   
Sbjct: 77  PLLIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  +      +        +H  +   L  +     +  
Sbjct: 137 NNHWGV----------PLTLARMPADTEYAVIEIGM----NHPGEISPLAQMAKPDVAMV 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                         A    +     + L     A+I AD  ++  +M +A +   R +  
Sbjct: 183 TTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAVDRRLREVEF 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G  G    L  V    +   V    +G    F    PG     NAL A     A+G D A
Sbjct: 243 GEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGALASAQAMGADLA 302

Query: 331 LVLEHLEKLHVVPGR 345
           L    L +     GR
Sbjct: 303 LAAASLGRWTPYKGR 317


>gi|291533201|emb|CBL06314.1| UDP-N-acetylmuramyl tripeptide synthase [Megamonas hypermegale
           ART12/1]
          Length = 104

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 10  DFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +L++ L+   ++    ++I  ++ DSR ++   +FV I G + DG+ FIPQAI  GA
Sbjct: 2   TIEQLVSVLNNVEVKGDVNKEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIEAGA 61

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            AI+             + ++  ++ V N R+ + L     Y    +  +
Sbjct: 62  CAIMTEKDVE-------VPADITVIKVPNMREAMELAVPYFYDYPGKKCV 104


>gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
 gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
          Length = 463

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 130/408 (31%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+                 +  
Sbjct: 26  LPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVED------------VLAAGA 73

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 74  AAVVVSREDCVAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 133

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 134 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 183

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 184 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 243

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 244 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S+   +  +
Sbjct: 302 AAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMRAAIDVL 361

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 362 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 408


>gi|145641283|ref|ZP_01796863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274120|gb|EDK13986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 99

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
           +  L   P    + +++ +  DSR ++AG +FVAI G++ DG+ FI  A+  GA A+V  
Sbjct: 4   LTALFNLPELKNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSALHSGASAVVSE 63

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           +  S +  +     N P++      + LS  A   
Sbjct: 64  TELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVF 98


>gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
 gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
          Length = 432

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 168/453 (37%), Gaps = 36/453 (7%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
           +LS     + +  +  V++DSR+  AG +F+A+ G   +G+ F  QA+  G    +V  A
Sbjct: 2   KLSALYQIFLDCAV--VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEA 59

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
               +      +N  I++VDN  + L   A+    +    ++ +TGT+GK++    +  +
Sbjct: 60  EYAPE------NNRHIILVDNCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAV 113

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +S    +  G  +               P+ L +  +      +  + + A+  G  +
Sbjct: 114 LSKSHNVLYTEGNLNNH----------IGVPMTLLRLKAE---HELAVIEMGANHPGEIK 160

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             +   +   G  TN+G+ H++   + +     K  L++ L  KE   +    D  +  +
Sbjct: 161 FLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRTKGELYDYLREKEDSTVFIHHD--NAYL 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M  AH+                     + +   +     +G        L GE+   NAL
Sbjct: 219 MDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLTFEWKAGKDGDLHKVQTQLIGEYNFPNAL 278

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +    G+++  + E L        R +   T      I   Y     S+   L+N 
Sbjct: 279 AAVTIGRFFGVEAGKIDEALAGYTPRNNRSQLKKTA-DNTLIIDAYNANPTSMMAALQNF 337

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R +T  + +++ G         R +  + A +   I     +    E    +  +     
Sbjct: 338 RNMTVEKKMLILG-------DMRELGTESAAEHRKIVDFLQE-CSFEKVLLVGEQFTATH 389

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQD-VLVVAGKG 468
           P +    N  E I+  ++    +D  +++  KG
Sbjct: 390 PPYHTYANAQEVIKE-LQTEKPKDYTILI--KG 419


>gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
 gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
          Length = 370

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 131/396 (33%), Gaps = 44/396 (11%)

Query: 1   MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1   MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +               SN P ++VD+        AS    K   ++ 
Sbjct: 54  FIETAFENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MASGSLLLVPADP----IVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQALDLPVTGKYNATNAMIASYVALQEGVSEEQIHQAFQGLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG 391
              Y     ++++IL+    I     G+ I V    
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADM 357


>gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL074PA1]
 gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA1]
 gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL007PA1]
 gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL056PA1]
 gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA1]
 gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL045PA1]
 gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA1]
 gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL038PA1]
 gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA2]
 gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA2]
 gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA1]
 gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL099PA1]
          Length = 485

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 135/442 (30%), Gaps = 59/442 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P
Sbjct: 27  DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            LVVD+ +  LS  A  +     +     +A+TG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLVVDDGQAGLSRLARHVVATERERGMRTIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A     +       +     G        +      
Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A      E L  +  A++ A D     +  R         
Sbjct: 185 VLNVGNAHLGEFGSREVIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNA------- 315
                 +     +V A             T++    +  +  P+       +        
Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAA 303

Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA   +A+  D                +     R +          +   Y    +S+
Sbjct: 304 TAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L ++          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLTSMGH--------VLATRRVRDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451
                G    I  G+  E I  
Sbjct: 410 LAAHAGFDVIIAVGDEAENIAE 431


>gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
 gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
          Length = 459

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 153/460 (33%), Gaps = 34/460 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  +      +L+N           + ++ +S+D+R + AG +F+A+ G + D H F+
Sbjct: 4   MSLAQIAQVTDGQLLNCPDAT------QTVSHISTDTRTVAAGALFLALQGERFDAHQFV 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+           A +          + P ++V +TR  L   A+ +  +    I+A+
Sbjct: 58  AQAV--------AKGAVAAVVSRPLADVSIPQILVADTRIALGQIAAWVRAQLDLQIVAI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+++      I Q++       G  +      Q     TP               
Sbjct: 110 TGSCGKTTLKEMCAAILQQAAPVLATQGNLNNEIGVPQTLLRLTPD-------------D 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V + A+  G        +K       N+   H+    + +    AK  +F   L  
Sbjct: 157 RYAVVELGANHPGEIAWTTSLVKPDVAVINNVAAAHLAGFGSLRGVAVAKTEIFSG-LSD 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A+I AD  +     +              +  F               T+       
Sbjct: 216 SGTAVINADSEFYDWWREILSVRTFSFGVENPKADFRAENITQDEQGIAAFTLISPLGQI 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG   V NAL AA +  ++G+    V   L  +  V GRF     +     I  
Sbjct: 276 DIQLPIPGLHNVSNALAAAAVTTSLGLSLVQVQSGLANMLPVKGRFCVQKLSDDLTLIDD 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            Y  +  S+   +  +  +   R++     G  G         +G+ A      A+ T  
Sbjct: 336 TYNASVQSVMAAIDTLAVMPGYRVLAFGDMGELGADAADLHRQIGEHARLKKLDAVFTV- 394

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
               E               F  K +  +A++T ++    
Sbjct: 395 ---GELSRHTAEAAAASGQHFANKDSLYQALQTLMQHQRP 431


>gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 485

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 84/490 (17%), Positives = 165/490 (33%), Gaps = 48/490 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +++     E+  ++   P    +   +E   DSR   +  +FVA+ G + DGH F+ 
Sbjct: 3   RLDEVLPGVQEEVNRRIHALPPALMQVAFSEAVIDSRLATSECLFVALRGERVDGHEFLA 62

Query: 62  Q----------AIAQGAE-------AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
                                     +V+    + +           ++ VD+ +  L+ 
Sbjct: 63  DAAARGARGALVRRSKVSSLTLERPYVVID-PVTGEGLERATPDTMLLIAVDDPQAALNR 121

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+   G +   ++ +TG+ GK+S       + QRS  +       ++ ++        T
Sbjct: 122 LAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVLQRSFRTLKSPRSYNSEATLPIVLLKLT 181

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                       +   G+      A    L + RL       G  TN+G  H++   + +
Sbjct: 182 AD------HQVAVLEMGMYGPGEIAHLAALARPRL-------GIVTNVGPSHLERMGSIE 228

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A   A      + LP++  AI+  DD   + + +                 +    +   
Sbjct: 229 AIQRA-KSELPQALPEDGFAILNIDDPRVRAMAEVTRARPFFYGLDPAADLWADAIE-SR 286

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   +  +G       PL G   V+ AL AA   + +G++   ++  L        
Sbjct: 287 GLQGVSFRVHYQGDGLHLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRS-EGAQL 345

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPI 401
           R   V   ++   I   Y  +  S++  L  +  +  GR I + G     G  ++    +
Sbjct: 346 RLLAVPGINQTTLIDDTYNASPASMQAALNLLAEL-DGRRIAILGDMLELGSIEEEAHRM 404

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNK 458
           +G  A ++A I I      R      I  E               +   A   A  +L  
Sbjct: 405 VGARAAEVAQILIAVGQRARW-----IANEAQQAGLPADQVYAVDDNDAAAHLARNLLAP 459

Query: 459 QDVLVVAGKG 468
            D +++  KG
Sbjct: 460 GDFVLI--KG 467


>gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
 gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
          Length = 424

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 116/347 (33%), Gaps = 33/347 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V +D+R ++   I+ A+ G   +G+ F  QA+  GA   +V     + D S       
Sbjct: 14  NGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKEYVTDRS------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+    L   A+         I+ +TG++GK++    +  +           G  
Sbjct: 67  --VLVDDVLSTLQQLANYHRNYLDIPIIGITGSNGKTTTKELIYAVLSEQYNVIATKGNL 124

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +  +       L T                 +  V + A+  G  +   +  +   G  T
Sbjct: 125 N--NHIGVPLTLLTMDAST-----------EIGIVEMGANHQGEIKMLCEIAQPNFGYIT 171

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L+  L        I   D      ++++ N   +    
Sbjct: 172 NFGKAHLEGFGGFEGVIKGKSELYNYLRENNELVFINDQDEIQ---VRQSANIVSKTFGS 228

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 ++L+            + +   +      L G +   N  VA  +     +   
Sbjct: 229 SQSEYPVYLED-------GSGNLKITVGETTITSNLIGTYNFSNIAVAMAMGNHFDVPLT 281

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            +   +EK      R + +  ++    +   Y     S+   LKN++
Sbjct: 282 HIKNGIEKYVPSNNRSQIIDKDTYKIILDA-YNANPTSMAAALKNLQ 327


>gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 476

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 160/463 (34%), Gaps = 34/463 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
                 E +  ++   +      I+ +++DSR ++   +++ I+G + DGH FI  A A 
Sbjct: 15  FEPWSVEAVAAITQGKVVHPGAAIHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACAN 74

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++  S       +   + +  I+ V +T + +   A+    ++   ++AVTG++GK
Sbjct: 75  GAAAVLCDSD---HLPAWQGKIDAGIVGVADTFEAMRALAAANRARYDIPVVAVTGSAGK 131

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +      +    G  +            TP         + +   G+ H  
Sbjct: 132 TTTKDLIASVLSMGYQTMKTQGNFNNEVGVPLTLFQLTP------AHEAAVVEMGMNHPG 185

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
             A S G        ++   G  TN+G  H++   +++    A        + K+  A+I
Sbjct: 186 EIARSIG-------EVRPHIGVITNIGSAHLENLGSKENTLKA-KMEIFGTMEKDDIALI 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y + ++ R +      +            +           +  E     F F  
Sbjct: 238 NGDDPYLRRIVARDYRVVRVGIREPDADLKAEAIREDLSG------LYFEADGVPFHFKW 291

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   VYN L+A  +     +D A +   L+       R +          +   Y    
Sbjct: 292 PGIHNVYNCLIAIWIGRYYHLDDAAIQAGLDAFVPSGNRMQMAEVGGL-RFVNDAYNANP 350

Query: 367 NSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
            S+   +  +  +  GR I V G     G+  +     +G+ A    D+ I        E
Sbjct: 351 ESMRAAMDTVCAVAEGRKIAVLGDMLEIGENAEAWHRAVGEYAGTHMDVLI-----GVGE 405

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI--EMLNKQDVLVV 464
             E +        P               I  E+    D +++
Sbjct: 406 WAETLCEGARGAAPNHPAVAAATVDAAAQILGEIAQTGDTVLI 448


>gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA2]
 gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA3]
 gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA4]
 gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA2]
 gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL103PA1]
          Length = 485

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 134/442 (30%), Gaps = 59/442 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P
Sbjct: 27  DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            LVVD+ +  LS  A  +     +     +AVTG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A     +       +     G        +      
Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A      E L  +  A++ A D     +  R         
Sbjct: 185 VLNVGSAHLGEFGSREIIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQ-------VYNA 315
                 +     +V A             T++    +  +  P+               A
Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAA 303

Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA   +A+  D                +     R +          +   Y    +S+
Sbjct: 304 TAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451
                G    I  G+  + I  
Sbjct: 410 RAAHAGFDVIIAVGDEAKNIAE 431


>gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 252

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 17/196 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++V   ++ I   +       G          +  +  R T    + +  +   
Sbjct: 117 TGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 176

Query: 177 LSSQGVTHVSVEASSH 192
                    +    + 
Sbjct: 177 CRIIERFTWNSFRGNC 192


>gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL060PA1]
          Length = 485

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 133/442 (30%), Gaps = 59/442 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P
Sbjct: 27  DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            LVVD+ +  LS  A  +     +     +AVTG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A     +       +     G        +      
Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A      E L  +  A++ A D     +  R         
Sbjct: 185 VLNVGSAHLGEFGSREIIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQ-------VYNA 315
                 +     +V A             T++    +  +  P+               A
Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAA 303

Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA    A+  D                +     R +          +   Y    +S+
Sbjct: 304 TAAALAAWAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451
                G    I  G+  + I  
Sbjct: 410 RAAHAGFDVIIAVGDEAKNIAE 431


>gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis WUE 2594]
          Length = 452

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L + A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLAALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA2]
          Length = 485

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 135/442 (30%), Gaps = 59/442 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P
Sbjct: 27  DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDTGAAAVLVTRRTDAQ---------LP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            LVVD+ +  LS  A  +     +    I+A+TG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLVVDDGQAGLSRLARHVVATERERGMRIIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A     +       +     G        +      
Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A      E L  +  A++ A D     +  R         
Sbjct: 185 VLNVGNAHLGEFGSREVIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNA------- 315
                 +     +V A             T++    +  +  P+       +        
Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAHQVANAVAA 303

Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA   +A+  D                +     R +          +   Y    +S+
Sbjct: 304 TAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLTAMGH--------VLATRRVRDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451
                G    I  G+  E I  
Sbjct: 410 LAAHAGFDVIIAVGDEAENIAE 431


>gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 139/449 (30%), Gaps = 41/449 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V+            +      
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
               +T   L   A     +  E  +LA+TG+SGK++V      I QR        G  +
Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L              + +  +  G      +         TN
Sbjct: 172 ----------NLVGLPLSLLPVEHSHR---FAVLEMGMNRPGEIARMAEIALPDIACITN 218

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+      Q    AK  LF  L       +    D      +              
Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGLPAWGKLVV--NLDDKRVRRLAARTGQQRITYGRT 276

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +                T++++           GE  V NAL AA L  A G+  A 
Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGC 390
           +   L        R +     +    I   Y    +S+   L  +  +   R +V V G 
Sbjct: 337 IAAGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGN 444
               G++       +G     L D   +       E   ++ A   H            +
Sbjct: 397 MLELGEQSVAAHRFIGGEVARL-DFDYLLA---VGEFAHQVVAAARHRGMAAARTAACAD 452

Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAGKG 468
           + E +     M++       D+++   KG
Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLF--KG 479


>gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M01-240013]
          Length = 479

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 42  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 89

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 90  AAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAV 149

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 150 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 199

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 200 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 259

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 260 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 317

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 318 AAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 377

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 378 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 424


>gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Photobacterium profundum SS9]
 gi|46914748|emb|CAG21525.1| hypothetical
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Photobacterium profundum SS9]
          Length = 468

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 144/422 (34%), Gaps = 36/422 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     +L + L    +   +  +  VS+D+R + A  +F+A+ G+  D H F   A+ 
Sbjct: 1   MIEVQLAQLADVLDA-ELIGSDITVANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNAMD 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR----LYGKHPENILAVT 121
            G  A++VS    ++          P LVV +T + L L  +     +   H    +A+T
Sbjct: 60  NGVAALLVSRHLPVE---------LPQLVVKDTHQALGLLGAWLKQTMEQDHGLKTMALT 110

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++V   V +I  + G      G  +            TP                
Sbjct: 111 GSCGKTTVKEMVAEILSQKGNVLATAGNFNNDIGVPLTLLRLTPE-------------HE 157

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + + A+      +  + +K       NL   H++   +      AK  +FE L    
Sbjct: 158 FAVIELGANHQQEIAYTTNLVKPQVALINNLAAAHLEGFGSLAGVAQAKGEIFEGLTAPL 217

Query: 242 S-----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISV 295
           +      AII  D       +        +  S+           +      +   T+  
Sbjct: 218 NGSGLSTAIINLDSNDVAMWLPFLAQHAVKTFSLTDISADFSATDIFINSEGRACFTMCT 277

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                D    L G   V NAL AA L +A+G     V   LE++  V GR +        
Sbjct: 278 PEGSTDITLTLAGTHNVSNALAAAALAMAVGATLEQVKAGLEQVVNVKGRVDVSHPREGL 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADI 412
             I   Y  +  S++  +  + + T  R  V+      G+        + + A     D 
Sbjct: 338 RLIDDTYNASVASVKAAIDLLASFTGQRWFVLGDMAELGEDSASLHREVAEYAMTKGLDK 397

Query: 413 AI 414
             
Sbjct: 398 VF 399


>gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 46P47B1]
          Length = 494

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 10/133 (7%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 E     + +D+R IQAG +F+AI G + D H FI  A  QGA A +V       
Sbjct: 23  HHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGASAAIVER----- 77

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQR 139
                +  + P L+V +T+  L          HP+  ++A+TG+SGK++    +  I  +
Sbjct: 78  ----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTTKEMIGAILSQ 133

Query: 140 SGLSSFQIGPTST 152
              +    G  + 
Sbjct: 134 IAPTLITRGNLNN 146


>gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 452

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 132/401 (32%), Gaps = 34/401 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 22  KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 69

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L + A          +  +TG+ GK++V   +  + +R    
Sbjct: 70  EDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGD 129

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  +      ++           P+ L              + +  +  G         K
Sbjct: 130 NAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 179

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A    N  R H+                  + L  +  A+I  +DA          N 
Sbjct: 180 PDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNL 239

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L +
Sbjct: 240 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALAL 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+    V E L+    + GR            I   Y    +S++  +  +  + + R
Sbjct: 298 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAPR 357

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
            I V G  G+  + +  +M       A     + A    DN
Sbjct: 358 -IFVMGDMGELGEDEAAVMHAEVGAYARDQGIEAAYFVGDN 397


>gi|291336143|gb|ADD95723.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C161]
          Length = 833

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 108/312 (34%), Gaps = 61/312 (19%)

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGK 298
               ++  DD ++ E++                     ++ ++V     +  V +S    
Sbjct: 488 HQRVVVNLDDDFASEIISNCKVPVVTYARRREHRDIADVYCERVDLSLFETAVLVSTPVG 547

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           + + +  L G+  V N L +    +A  I    + + L + +   GR E V    +    
Sbjct: 548 ETEIVTALVGDANVSNVLASIASGLATEIPLENIAQGLGRANPAGGRMELV-DEGQKFCA 606

Query: 359 YVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR-----------DQGKRPIMGKIA 406
            VD A T   +   +++ R I    R+IVV G  G             ++  R  +G+  
Sbjct: 607 LVDSAKTPEDVMNAIQSARAIPQCRRVIVVVGADGTNNDINATIDNGTEKAMRRKLGETV 666

Query: 407 LDLADIAIVTDDNPRSED--------------------------PEKIRAEI-------- 432
              AD+  VT  +P++ED                          P+ I A+I        
Sbjct: 667 DKYADVVFVTTQSPKNEDAYDLLEDVVDGFRSRVYDLPEVKERLPDGIIADIPFMKDMYL 726

Query: 433 -----------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
                      +  +       +R  A+R AI M  + D +++ GKG +    +  G+K 
Sbjct: 727 IHPNAQSEAVELQNLVRRYVIVDRFFAVRAAIAMAEENDCVLILGKGDQDFFEIE-GQKY 785

Query: 482 MSVDCDIIREIL 493
              D    R+ L
Sbjct: 786 WFDDRMESRDAL 797



 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 14/154 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNK-----EDGH 57
           L+D       +++  + +   +  + +I+ + SD+R+   G +FV +  +       DGH
Sbjct: 77  LRDTFELANIDVVKWIDLEEEE--DVEISGIVSDARYAIPGDLFVCVDNSSDDQDPHDGH 134

Query: 58  LFIPQAIA-QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             +  AIA +GA A+V       +D  A   +  P+ VV +T+  L       Y      
Sbjct: 135 DDVSDAIALRGAVAVVSER----EDGVAENANGAPVAVVKSTKGILGKIGKAFYEDPSGK 190

Query: 117 ILAVT--GTSGKSSVASFVQQICQRSGLSSFQIG 148
           ++     G  GK +  + ++ I + S  +  + G
Sbjct: 191 LVIAGVLGHRGKDTTCNLIKSIFEASERTLKKNG 224


>gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
 gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
          Length = 504

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 84/498 (16%), Positives = 151/498 (30%), Gaps = 65/498 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E++    +  +     ++   V  DSR + AG +F+A+ G + DGH     A+
Sbjct: 4   MTLARIAEIVGG-ELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGARVDGHDHAASAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL-----------------FAS 107
             GA A++ +    +     +    T         K ++L                  A 
Sbjct: 63  EAGAVAVLAARPVGVPAVVVSPAPGT------GPSKAMALEHDTDGSGAAVLAALAKLAR 116

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                     L V G +G +   S    +          + P  + ++            
Sbjct: 117 ASVDDLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHP------- 169

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL   +  G   + + A   G             G   N+G  H+    ++ A  
Sbjct: 170 ---WTALRADAGTGFLVLEMSARDRGHIASLAAIAPPKIGVVLNVGTAHLGEFGSRDAIA 226

Query: 228 NA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
            A  ++            AI+ ADD     +  R       ++             V   
Sbjct: 227 AAKGELPESLPSADDGGVAILNADDPLVVAMAPRTSAR-VVLVGRSESAHVRATDIVLDE 285

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             + + T++           + GE QV NAL AA + +  G D   +   L     V GR
Sbjct: 286 RARARFTLTTAAGSVPVELAVHGEHQVGNALAAAAVALECGADLDQIARALSAAAAVSGR 345

Query: 346 FEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS------GRIIVVFGCG---GDRD 395
              V     G  +  D Y    +S+   LK + ++         R   V G     G   
Sbjct: 346 RMDVRDRPDGVTVVNDSYNANPDSMRAALKALVSMARSGREAARRSWAVLGEMAELGPES 405

Query: 396 QGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRI 446
             +   +G+ A+ L  + + IV    P           +  G           I   +  
Sbjct: 406 VVEHDAIGRFAVRLDVSRLIIVGTGRP--------ARAMHQGAVMEGSWGEESILVPDIA 457

Query: 447 EAIRTAIEMLNKQDVLVV 464
            A+    + L   D+++V
Sbjct: 458 GAVALLEKELAPGDLVLV 475


>gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 452

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L + A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKVGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
 gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
          Length = 461

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 141/420 (33%), Gaps = 50/420 (11%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE---------------DGHLFI 60
             ++I   Q  E  ++ +  DSR I+ G +F+ I  +                 DGH FI
Sbjct: 15  KLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFI 74

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A               ++++ P+++V +T+  L   A     K     +AV
Sbjct: 75  NSALKNGAVASFADH---------IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  R       +   +                      ++ +   
Sbjct: 126 TGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPAD-----TEIAVIEMG 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A S  L+ +            T +G  HI++ +T+    +AKM + + L   
Sbjct: 181 MDHLGQLTALSKMLEPN--------IALITMIGEAHIEFFKTRDKIADAKMEIIKGLKKD 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +       D     + +RA       ++ G +              + +  +S +    
Sbjct: 233 GTFIY----DGDEILLKERADLFSGEKVTFGEKES----NNFWVSQIEDKKRLSFKVNQE 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   L G+F   N   A  +     + S  + E  + L +   R + +  +     I  
Sbjct: 285 TYSVNLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLLTGSKGETIISD 344

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415
            Y     +    ++ ++     G+ I+V G     GD++      +       A D   +
Sbjct: 345 VYNSNPTAAIKAIEILKDFPTQGKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVYL 404


>gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           sp. RS-1]
 gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseiflexus sp. RS-1]
          Length = 490

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 90/490 (18%), Positives = 164/490 (33%), Gaps = 48/490 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L +++     E   +    P    +   +E   DSR   +  +FVA+ G + DGH F+ 
Sbjct: 8   QLDEVLRGVQAEADRRKPSLPPALMQVAFSEAVIDSRQATSECLFVALRGERVDGHEFLA 67

Query: 62  QAIAQGAEAIVV----------SSAYSLQDF------SATIRSNTPILVVDNTRKFLSLF 105
            A A+GA   +V             Y++ D             +  ++ VD+ +  L+  
Sbjct: 68  DAAARGARGALVRRDKLSNLSLERPYAVIDPVTGEGLEQATPDSVLLIAVDDPQAALNRL 127

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A+   GK+   ++ VTG+ GK+S       + QR            +  S+  +  L   
Sbjct: 128 AAYHRGKYHPVVIGVTGSVGKTSTKEVTASVLQR------SFRTLKSPRSYNSEASLPIV 181

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                A     +   G+      A    L + RL       G  TN+G  H++   + +A
Sbjct: 182 LLKLTADHQVAVLEMGMYGPGEIAHLAALARPRL-------GIVTNVGPSHLERMGSIEA 234

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              AK  L + L       +    D      M     A      +               
Sbjct: 235 IQRAKSELPQALPDDGFAIL--NIDDLRVRAMAEVTRARPFFYGLDPAADLWADSIESRG 292

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                  +  +G  F    PL G   V+ AL AA   + +G++   ++     L     +
Sbjct: 293 LQGISFRVHYQGDAFYLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAG---LRDESAQ 349

Query: 346 FEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPI 401
              +          +D  + ++    +   N+     GR I + G     G  ++     
Sbjct: 350 LRLLAVPGVNQTTLIDDTYNASPASMLAALNLLAELEGRRIAILGDMLELGSVEEEAHRR 409

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGI--PGFIEKGNRIEAIRTAIEMLNK 458
           +G    ++A   I      R      I  E +  G+         +  EA   A+  L  
Sbjct: 410 VGARVAEVARFLITVGRRARW-----IADEALQAGMAPDQVWSVDDNDEAADLAMSCLAP 464

Query: 459 QDVLVVAGKG 468
            D++++  KG
Sbjct: 465 GDIVLI--KG 472


>gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha275]
 gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 452

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
 gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
          Length = 461

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 141/420 (33%), Gaps = 50/420 (11%)

Query: 16  NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE---------------DGHLFI 60
             ++I   Q  E  ++ +  DSR I+ G +F+ I  +                 DGH FI
Sbjct: 15  KLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSDYTIAEKDGHKFI 74

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A               ++++ P+++V +T+  L   A     K     +AV
Sbjct: 75  NSALKNGAVASFADH---------IVQTSLPLILVSDTQLALWALAKNYLNKINPKRIAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  +  R       +   +                      ++ +   
Sbjct: 126 TGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPAD-----TEIAVIEMG 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 + A S  L+ +            T +G  HI++ +T+    +AKM + + L   
Sbjct: 181 MDHLGQLTALSKMLEPN--------ISLITMIGEAHIEFFKTRDKIADAKMEIIKGLKKD 232

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +       D     + +RA       ++ G +              + +  +S +    
Sbjct: 233 GTFIY----DGDEILLKERADLFSGEKVTFGEKES----NNFWVSQIEDKKRLSFKVNQE 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            +   L G+F   N   A  +     + S  + E  + L +   R + +  +     I  
Sbjct: 285 TYSVNLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDNLQITKNRLQLLTGSKGETIISD 344

Query: 361 DYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415
            Y     +    ++ ++     G+ I+V G     GD++      +       A D   +
Sbjct: 345 VYNSNPTAAIKAIEILKDFPTRGKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVYL 404


>gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL001PA1]
          Length = 485

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 134/442 (30%), Gaps = 59/442 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P
Sbjct: 27  DVVIDTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            LVVD+ +  LS  A  +     +     +AVTG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A     +       +     G        +      
Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A      E L  +  A++ A D     +  R         
Sbjct: 185 VLNVGSAHLGEFGSREIIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQ-------VYNA 315
                 +     +V A             T++    +  +  P+               A
Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAA 303

Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA   +A+  D                +     R +          +   Y    +S+
Sbjct: 304 TAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451
                G    I  G+  + I  
Sbjct: 410 RAAHAGFDVIIAVGDEAKNIAE 431


>gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 461

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 128/419 (30%), Gaps = 48/419 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V+ DSR + +G +FVA+ GN+ DGH F+ QA+++GA  ++V    S  +           
Sbjct: 30  VALDSREVLSGDLFVALRGNRTDGHAFVGQALSRGARCLLVE--ISKLEEIRPGLGGASC 87

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +    L+  AS         ++ +TG+ GK++    +       G      G   +
Sbjct: 88  LAVPDPELALAEMASHWLKLVSPVVVGITGSVGKTTTREVIL---SLLGRRFKVHGSPKS 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            ++    +          A  +          +    SS G     +          T +
Sbjct: 145 YNTLIGLS----------ATVMGMDRGCDNLVLEYGTSSFGEISKLVSYFPPDEMVITEV 194

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H++  +  Q    AK+ + E    +    + Y  D               + + VG 
Sbjct: 195 APAHLERLRDVQGVLRAKLEILESQRGRF---LSYNADNDLLWGAVTGGGLTVQRMGVGV 251

Query: 273 QGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           +   + +     +       ++      D                 +A    +A+     
Sbjct: 252 RRGDVRISDRRIVWGDDGPRLNFNLHHGDRQLEVSSGLWPLHGAYPLALSWVMALRFGVE 311

Query: 331 LVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIV 386
            +   +      V GR   + +   G  +   Y     S+   + +   +  G   R   
Sbjct: 312 DLFPEVAYGFKPVKGRGRAIRSREGGWLMDESYNANPTSMFGAIDSTLELARGGSMRPQA 371

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V G            MG+ +       +                + ++G    I  G+R
Sbjct: 372 VLGGML--------EMGEDSSLWHRRIV----------------DRLNGFQRVILVGDR 406


>gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis CI]
 gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 250

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 8   MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNLFVPIIRVK-DGHEYV 60

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 61  KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TG++GK++V   ++ I + +       G  ++ 
Sbjct: 115 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ 147


>gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 139/449 (30%), Gaps = 41/449 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V+            +      
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
               +T   L   A     +  E  +LA+TG+SGK++V      I QR        G  +
Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L              + +  +  G      +         TN
Sbjct: 172 ----------NLVGLPLSLLPVEHSHR---FAVLEMGMNRPGEIARMAEIALPDIACITN 218

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+      Q    AK  LF  L       +    D      +              
Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGLPAWGKLVV--NLDDKRVRRLAARTGQQRITYGRT 276

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +                T++++           GE  V NAL AA L  A G+  A 
Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGC 390
           +   L        R +     +    I   Y    +S+   L  +  +   R +V V G 
Sbjct: 337 IAAGLAAYRPFAKRMQLQPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGI--PGFIEKGN 444
               G++       +G     L D   +       E   ++       G+         +
Sbjct: 397 MLELGEQSVAAHRFIGGEVARL-DFDYLLA---VGEFAHQVVEAARYRGMAAARTAACAD 452

Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAGKG 468
           + E +     M++       D+++   KG
Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLF--KG 479


>gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
 gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
          Length = 502

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 74/484 (15%), Positives = 159/484 (32%), Gaps = 64/484 (13%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ G   DGH ++  AI +GA AI+VS    + D +       
Sbjct: 23  NEVQFNSKDVKKGDLFIALKG-NGDGHDYVLDAIDKGANAIIVSKHIDIVDKNK------ 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ--------------- 135
            I++VD+  + L   A    G      +A+TG+ GK+S    ++                
Sbjct: 76  -IILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKTSTKGALKTLLTETSDKSLHLLYN 134

Query: 136 --ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY---------------------LAK 172
               +    ++            A   RLT   P+                      L  
Sbjct: 135 EANKEEFEGNTEYSTTEYKKVCDAASTRLTYKLPLEVSYIKGLVFASRGNFNNHLGLLIN 194

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S           +  +  G  +  +  +K      TN+   H+++  + +    AK  
Sbjct: 195 LASMSDDTEYAIFELGMNHKGEIRELVQILKPNIAMITNVSEAHLEFFNSLEDIAEAKCE 254

Query: 233 LFEELLPKESPAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +FE     +   I    + Y+K + + +  +                L     +  +  +
Sbjct: 255 IFENFSKNDIAVINANTNCYNKILSILKNLSIDKIYNFGASYNTSAELTLYANLGKQVHL 314

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              +  K  +   P        N +    +   +G +  +   HL  +    GR E +  
Sbjct: 315 KYKINNKTIEITIPFIPRHFAENYIGVLLIINILGKNLDIAANHLANISPTKGRGEMINI 374

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIAL 407
            +        Y  +  S++  L+ ++ + +     + G       + +   + ++  I  
Sbjct: 375 QNCCVICDY-YNASPQSMKAALEYLKQVPAENKTAIIGDMLELGQNSEALHKELVPYILD 433

Query: 408 DLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +   N +   +  P KI  +    +   I          T  ++    +++++
Sbjct: 434 ADCSKVFLVGKNTKYIYNLLPFKIAKKYFKNVDELITHI-------TVTDLFKNNELILI 486

Query: 465 AGKG 468
             KG
Sbjct: 487 --KG 488


>gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
          Length = 476

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +Q G +FVA+   + DGH F+  A+ +GA A +VS           + S+ 
Sbjct: 25  TGVSIDTRTLQPGDLFVALKDVR-DGHDFVAMALEKGAAAALVS------HRPDGVASDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+LVV +  K L         +    I A+TG+ GK+S    ++ +  R G         
Sbjct: 78  PLLVVPDVLKGLEALGIAARARSTARIAAITGSVGKTSTKEMLRTVLSRQGKCHAAEASY 137

Query: 151 STISSFAQDNRLTTPSP 167
           +                
Sbjct: 138 NNHWGVPLTLARMPADA 154


>gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
 gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
          Length = 451

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 91/447 (20%), Positives = 164/447 (36%), Gaps = 47/447 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR    G +FVA+   + DGH F+P A A+GA  ++V+                
Sbjct: 26  TGVSIDSRTTAPGELFVALADAR-DGHDFVPDAEAKGAACVLVARDVGAG---------- 74

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V++ +  L+        +    ++AVTG+ GKS+    +++I    G +       
Sbjct: 75  PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKSTTKEMLRRILSAFGATHAAEASF 134

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  +         V +  +  G         +   G  T
Sbjct: 135 NNH----------IGVPLTLARLPAE---ADFAVVEIGMNHPGEIAPLSAITRPHVGVIT 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +G  H+    + +A  + K  L   ++P  +  +      +   + +RA +    V   
Sbjct: 182 AIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLPRG--PFLSRLARRARDGVRVVSFG 239

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   L +  +  +   VT ++           PG     NA+ A     A+G+D  
Sbjct: 240 AQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAALAAAAALGLDPV 299

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVV 387
                L+    + GR      N  G  I +    Y  + NS+   L+ + ++  GR I V
Sbjct: 300 QAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL-SLLPGRRIAV 358

Query: 388 FGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR---SEDPEKIRAEIIHGIPGFIE 441
            G     GD    +   +      +AD+      + R    E PE+ R          ++
Sbjct: 359 LGDMLELGDYADDEHRDLADAVSGVADLVFACGPHMRVMFDELPERQRGA------WAVD 412

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   A+R A+ +    DV++V  KG
Sbjct: 413 AASLAPAVRAALAV---GDVVLV--KG 434


>gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis OX99.30304]
          Length = 452

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 133/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L + A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALINNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
 gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
          Length = 479

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 132/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+AG +F A+ G + D H F+                 +  
Sbjct: 42  LPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGA 89

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 90  AAVVVSREDCVAMDGALKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAV 149

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R    +  +      ++           P+ L              + +  +  G   
Sbjct: 150 LRRRFGDNAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 199

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 200 VLTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVF 259

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 260 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 317

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 318 AAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 377

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 378 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 424


>gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
 gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae]
 gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
          Length = 428

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 134/382 (35%), Gaps = 32/382 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S D+R I+ G +F AI G   D + F  +A+  GA  +V+ +     D          
Sbjct: 15  SLSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYFIDDRT------- 67

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V+N+ + L   +          I+A+TG++GK++    +  +  +   +   IG  +
Sbjct: 68  -ILVNNSLETLQELSKFHRNYLKLPIVALTGSNGKTTTKELINVVLSKKFKTKATIGNLN 126

Query: 152 TI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                       T  + I + +  +    +      +    +G                T
Sbjct: 127 NHIGVPLTLLSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYGY--------------IT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     Q     K  +++ LL       +  +D      ++   + G +  + 
Sbjct: 173 NFGKAHLEGFGGVQGVIEGKSEMYQYLLKNNKTVFVNLEDP-----IQIEKSTGIKNFTF 227

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G   +      +   + +    + +E +DF     L G +   N   A  +     ++ A
Sbjct: 228 GVNKES---ADLKIKNIQANPFVVIEYEDFKVESHLIGLYNANNINAAVSIGKYFNVEDA 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           L+ E +E       R + +        I   Y    +S+ + + N   + +   I++ G 
Sbjct: 285 LIKEAIENYIPANNRSQLLKKG-SNEIILDAYNANPSSMAVAITNFLQLENQNKIMILGD 343

Query: 391 GGDRDQGKRPIMGKIALDLADI 412
             +           I   L++ 
Sbjct: 344 MFELGNESHEEHKAIVDSLSNQ 365


>gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
 gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis CU385]
 gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
          Length = 439

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 130/403 (32%), Gaps = 35/403 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 6   KPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVED------------VLAAGAAAVVVSR 53

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L   A          +  +TG+ GK++V   +  + +R    
Sbjct: 54  EDCAAMDGALKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGD 113

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
              +      ++           P+ L              + +  +  G         K
Sbjct: 114 DAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 163

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A    N  R H+                  + L  +  A+I  +DA          N 
Sbjct: 164 PNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNL 223

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L +
Sbjct: 224 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALAL 281

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+    V E L+    + GR            I   Y    +S++  +  +  + + R
Sbjct: 282 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAPR 341

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
           I V+   G  G+  + +   M       A     + A    DN
Sbjct: 342 IFVMGDMGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 384


>gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
 gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
          Length = 457

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 76/485 (15%), Positives = 158/485 (32%), Gaps = 63/485 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         E+   +        + +  + +   DSR I AG +FV + G + DGH 
Sbjct: 1   MKL------TIHEVAQVVRAKNDVTVYPDSPLVKAEFDSRLITAGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI  A   GA   +     +          N P ++VD+        A+    K   ++ 
Sbjct: 54  FIETAFENGAVVTLSEKKVA----------NQPYILVDDVLTAFQTLAAYYLEKTAVDVF 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    +  +   +  +    G          +N +  P             
Sbjct: 104 AVTGSNGKTTTKDMLAHLLSTTYKTYKTQGN--------YNNEIGLP-------YTVLHM 148

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +G   + +E     L    L        +              +     AK ++     
Sbjct: 149 PEGTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +    ++   D     +++       +V+  G   +   L+    +  K  +T      
Sbjct: 209 MRPGSLLLAPAD----SIVEDYLPTDKKVVRFGQGAE---LEITDLVERKDSLTFKANFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++A+ + +  G+    + +  + L +   R E+    +    +
Sbjct: 262 EQTLDLPVTGKYNATNAMIASYVALQEGVSEEQIRQAFQNLDLTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIM-GKIALDLAD 411
              Y     ++++IL+    I     G+ I V       GD+       M   ++ D+ D
Sbjct: 322 SDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLD 381

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             I        ED  ++                    ++      ++     L   D ++
Sbjct: 382 TVIF-----YGEDIAELSQLASQMFPIGHVYYFKKTADEDQFEGLVKQVKASLGTNDQIL 436

Query: 464 VAGKG 468
           +  KG
Sbjct: 437 L--KG 439


>gi|255534719|ref|YP_003095090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340915|gb|ACU07028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 427

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 134/402 (33%), Gaps = 43/402 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
             + DSR ++   IF A  G+  +       A  +GA A++V                  
Sbjct: 18  NATIDSRTLKKDDIFFAFSGDSFNAATLAEDAADKGALAVIVEQKAYENPARD------- 70

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           I  V +T  FL   A+    +    ++A+TG++GK++    +  +  +     +  G  +
Sbjct: 71  IFYVPSTLNFLQELATHHRDQLDIPVIALTGSNGKTTTKEIIHAVLAQKYNVQYTSGNLN 130

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK----LIAG 207
                          P+ L    S        H           Q  ++ +        G
Sbjct: 131 NH----------IGVPLTLLSVRS-------HHNMAVIEMGANHQKEIEMLCEIAKPTYG 173

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN G+ H++     +     K  ++  L       ++  +DA    +          V
Sbjct: 174 YITNFGKAHLEGFGGFEGVIKGKSEMYSYLRANSQTILVNENDA----IQVENTAGYSPV 229

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G        ++V   +      + +   D      L G +   N   AA L +  GI
Sbjct: 230 ITFGKPDSDYLFEEVSNQNF-----VGLRFGDQTAHSQLTGSYNFTNLCAAASLGLHFGI 284

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
               +   +E       R + +     G  + +D Y    +S+E  LKN       + I+
Sbjct: 285 SFREIKTAIENYVPTNMRSQIL--EKNGKTLVLDTYNANPSSMEESLKNFNRFEGSKTII 342

Query: 387 V--FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDP 425
           +      G+  + +   +  +A  LA D  +   +N R  +P
Sbjct: 343 IGDMLELGNESEAEHRRILDLAGSLAFDAVVTVGENFRRINP 384


>gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
          Length = 885

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 137/385 (35%), Gaps = 28/385 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GK++V   +  I + +G      G T+T   +   + +        A A + L
Sbjct: 482 IAITGTNGKTTVTRMIGHIWRTAGYCV---GMTTTDGIYIDGHCIQKGDTTGPASARAVL 538

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEE 236
           +   V    +E +  G+ +  L   +   G  TN+  DH+     +     A    L  E
Sbjct: 539 TDPTVEVAVLETARGGIVRGGLAFDQCDVGIITNITEDHLGQDGIEDLDDLAYIKSLVVE 598

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--- 293
            +     A++ ADD Y   +  R         +            +       + +I   
Sbjct: 599 TVRPGGYALLNADDPYVVRLAGRVRGEVVYFSTEADNIVVRRHLGIGGKAFFVKDSILYA 658

Query: 294 --------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                        D            + NALVAA  C  + +    + + L      PGR
Sbjct: 659 ACGSLASPICAVGDIPVTLGGIAVHNLQNALVAAAACYCLKVPMTHIRQGLATFDQNPGR 718

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
              +       R+ +DY H     + ++  +R + + R++ V    GDR       +G+I
Sbjct: 719 LNLLTLG--DIRVCIDYGHNPAGYQALINTVRRLGATRLVGVIAAPGDRRDDVIVNVGRI 776

Query: 406 ALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLN 457
           A    D   + +D + R   P ++   +  G+       +R        EA+  A+    
Sbjct: 777 AGRGFDYIYIKEDADRRGRAPGEVAQLLRRGVLEAQFPEDRIVTILAETEAVAKALADAR 836

Query: 458 KQDVLVVAGKGHETVHIVTNGEKKM 482
             D++VV    +E    V  G ++ 
Sbjct: 837 PGDLVVVF---YEKYEKVLAGIQEF 858


>gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 140/449 (31%), Gaps = 41/449 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+DSR I+AG +FVA+ G   D   F+ +A+A+GA  +V+            +      
Sbjct: 59  ISTDSRTIEAGDLFVALRGENFDAQQFVAEAVAKGAAGLVLEQPPVEPVPVPVVLVP--- 115

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
               +T   L   A     +  E  +LA+TG+SGK++V      I QR        G  +
Sbjct: 116 ----DTLAALGDLAHYRRCRMRELQVLAITGSSGKTTVKEMTATILQRRQQVLKTRGNLN 171

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L              + +  +  G      +         TN
Sbjct: 172 ----------NLVGLPLSLLPVEHSHR---FAVLEMGMNRPGEIARMAEIALPDIACITN 218

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+      Q    AK  LF  L       +    D      +              
Sbjct: 219 VQEAHLAGLADVQGVARAKGELFAGLPAWGKLVV--NLDDKRVRRLAARTGQQRITYGRT 276

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +                T++++           GE  V NAL AA L  A G+  A 
Sbjct: 277 RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAAALATAAGVSPAE 336

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGC 390
           +   L        R + +   +    I   Y    +S+   L  +  +   R +V V G 
Sbjct: 337 IAAGLAAYRPFAKRMQLLPFIAGLKLIDDTYNANPSSMLAALATVHNLRRQRRVVAVLGD 396

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGN 444
               G++       +G     L D   +       E   ++ A   H            +
Sbjct: 397 MLELGEQSVAAHRFIGGEVARL-DFDYLLA---VGEFAHQVVAAARHRGMAAARTAACAD 452

Query: 445 RIEAIRTAIEMLNKQ-----DVLVVAGKG 468
           + E +     M++       D+++   KG
Sbjct: 453 KEEIVARLRRMVDAGELAADDIVLF--KG 479


>gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
 gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
          Length = 464

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 87/420 (20%), Positives = 145/420 (34%), Gaps = 35/420 (8%)

Query: 7   IYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +   F EL               + + ++ DSR +Q G IF+A+ G + DGH F+ QA A
Sbjct: 8   LLWTFDELAKATGGTLTGVGNIAEASGINFDSRALQPGDIFLALQGAR-DGHDFVAQAFA 66

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTS 124
            GA   V                    L+V + +K L   A              VTG+ 
Sbjct: 67  SGAVLAVTRRPIE----------GGACLLVPDVQKALEDIAVFARNRAPQTRRGGVTGSV 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+SV   V Q  Q++G +   I   +               P+ LA+  +         
Sbjct: 117 GKTSVTQMVMQGLQQAGRAHSAIKSFNNH----------IGVPLTLARMPADTERAVFEI 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
               A          + +   A   T +G  H +     +A   A      + L     A
Sbjct: 167 GMNHADEI---TPLSEFVAPHAVVITTVGAVHTENFPDGEAGVAAAKAEIFDGLVPGGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I+ AD+ +   +  +A  +G  V + G   G    L +     ++  V     G+D  F 
Sbjct: 224 ILNADNRWFDHLSTKARGSGALVAAFGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFS 283

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360
               G  Q  NAL A  +  A+ +D    L  LE    + GR   +    +GG + +   
Sbjct: 284 LSHTGRHQAVNALAALLMLEALDVDLDTSLLALESFATLEGRGRVITKPFKGGELTIIDE 343

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV 415
            Y     S+   L ++    + GR + V       G  +  +   + + +     D   +
Sbjct: 344 SYNANPVSMTATLASLGQRETAGRKVAVLTDMLELGVDEADQHAGLAEAVVASGVDRVYL 403


>gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 300

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+I+   ++   +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVIDGEGLYE-SFHHLEIHGVCIDSKNMKEGNLFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYGTP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TG++GK++V   +  I   +       G  ++ 
Sbjct: 117 TGSNGKTTVKDIIGSILSSTYRVHKTKGNFNSQ 149


>gi|270340250|ref|ZP_06007583.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
 gi|270332023|gb|EFA42809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
          Length = 458

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 128/383 (33%), Gaps = 26/383 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+     IF+A+ G   DG+ F   A+ +G    V+              ++  I
Sbjct: 34  VTTDSRNCPKDSIFIALKGASFDGNKFAKAALDKGCSYAVIDEK------EYDDEADDRI 87

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    +  +           G  + 
Sbjct: 88  ILVDDCLLTYKELAREHRRQFDIPVIGITGTNGKTTTKELLSAVLSEKYNVMHTEGNFNN 147

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +               L    +  +  V + AS  G  +  +D ++   G  TN+
Sbjct: 148 DVGVPK-------------TLLRLNKTHDIAVVEMGASHVGDIKKLVDYVEPTCGLITNV 194

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +    AK  L++ L    +P  +   + +  ++  +             
Sbjct: 195 GRAHLQGFGSFEGVMQAKGELYDYLKACHAPVFLNTSNEHLVDMAHQRRLERIISYGQDD 254

Query: 273 QGKFI-----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +           +                  +    L G + + N L A  + +  G+
Sbjct: 255 GAQVWGEVMSCDPFLKLQWGASHAEHHSPTSMQEVSTHLVGAYNLDNVLAAITVGLHFGV 314

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IV 386
               + + LE       R +FV   SR   I   Y     S+   + N   ++  +  + 
Sbjct: 315 SEEQIRQALESYTPSNNRSQFV-ETSRNRLIIDAYNANPTSMAAAIDNFERMSMTQPRMA 373

Query: 387 VFGCGGDRDQGKRPIMGKIALDL 409
           + G   +  +       KIA  L
Sbjct: 374 ILGDMRELGEVSEEEHQKIADSL 396


>gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 483

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 155/485 (31%), Gaps = 45/485 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           D+      E I             +I     +DSR +  G +FVA+ G   DGH F+   
Sbjct: 3   DMTLDALREAIG----LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSV 58

Query: 64  IAQGAEAIVVSSAYSLQ----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
             +G +  +VS   +        +A       +L V + +  L   A     +       
Sbjct: 59  ARRGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARG 118

Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++ +TG++GK++     +Q+    G +   +   +          LT      
Sbjct: 119 GTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFN----NEVGLPLTVLEA-- 172

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                    S     + + AS  G D   L  I  +  +   +         +      A
Sbjct: 173 -------DVSTEYLVLEMGASQPG-DIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAA 224

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NK 288
           +     E L     AI+ ADD   + +  R   +G  +     +   + +  +      +
Sbjct: 225 EKATILENLGPSGMAILNADDPRVEAMSGR--TSGRLMYFSTKKNTPVRITDLRLDEAAR 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFE 347
               +            L G   V NAL AA +    G+  A +   L     V   R  
Sbjct: 283 GSFLLHTPEGSAPVQLQLLGAHHVTNALAAAAIAHVAGMTPAEIATVLSNATPVSEHRMN 342

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMG 403
            V        I   Y    +S+   L  I    + R +V+        G+        +G
Sbjct: 343 LVHLADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIG 402

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + A +L    ++T   P ++  E   + +        +  +   A R   E++   D+++
Sbjct: 403 RYAANLGISVLLTV-GPMAKHIESAYSALKRDGES-HQVMDATAAGRLLQEIVRPGDLIL 460

Query: 464 VAGKG 468
           V  KG
Sbjct: 461 V--KG 463


>gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 483

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 83/485 (17%), Positives = 155/485 (31%), Gaps = 45/485 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           D+      E I             +I     +DSR +  G +FVA+ G   DGH F+   
Sbjct: 3   DMTLDALREAIG----LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSV 58

Query: 64  IAQGAEAIVVSSAYSLQ----DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
             +G +  +VS   +        +A       +L V + +  L   A     +       
Sbjct: 59  ARRGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARG 118

Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++ +TG++GK++     +Q+    G +   +   +          LT      
Sbjct: 119 GTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFN----NEVGLPLTVLEA-- 172

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                    S     + + AS  G D   L  I  +  +   +         +      A
Sbjct: 173 -------DVSTEYLVLEMGASQPG-DIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAA 224

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NK 288
           +     E L     AI+ ADD   + +  R   +G  +     +   + +  +      +
Sbjct: 225 EKATILENLGPSGMAILNADDPRVEAMSGR--TSGRLMYFSTKKNTPVRITDLRLDEAAR 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFE 347
               +            L G   V NA+ AA +    G+  A +   L     V   R  
Sbjct: 283 GSFLLHTPEGSAPVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMN 342

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMG 403
            V        I   Y    +S+   L  I    + R +V+        G+        +G
Sbjct: 343 LVHLADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIG 402

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + A +L    ++T   P ++  E   + +        +  +   A R   E++   D+++
Sbjct: 403 RYAANLGISVLLTV-GPMAKHIESAYSALKRDGES-HQVMDATAAGRLLQEIVRPGDLIL 460

Query: 464 VAGKG 468
           V  KG
Sbjct: 461 V--KG 463


>gi|242308785|ref|ZP_04807940.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pullorum MIT 98-5489]
 gi|239524678|gb|EEQ64544.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter pullorum MIT 98-5489]
          Length = 230

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 114/246 (46%), Gaps = 17/246 (6%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SSH + Q+R++G++      TN+  DH+DYH+T + Y   K           S    
Sbjct: 1   MEVSSHAIVQNRIEGLEFALRILTNITSDHLDYHKTLENYIATK----------NSFFAT 50

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D+    +  K A  +    ++ G +       K  ++       I+   ++      L
Sbjct: 51  PKDEKLINKDEKNAQYSLQNTMTYGIESNATFHIKAYSLKGGITAQIAYGKEEAMLNAYL 110

Query: 307 PGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            G+  +YNAL A   + I       ++ + LE    V GR + V   +    I VD+AHT
Sbjct: 111 FGKHNLYNALAAIGAVKILTKSPLQMIADKLENFGGVLGRMQVV---NEKPLIIVDFAHT 167

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            + +E + ++       +I+V+FG GGDRD+ KRP MG  A   A    +T DNPRSE+P
Sbjct: 168 QDGMEQVFQS---FLHQKIVVIFGAGGDRDKTKRPKMGYCASKYASKIYITSDNPRSENP 224

Query: 426 EKIRAE 431
           + I  E
Sbjct: 225 KMIMQE 230


>gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
 gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
          Length = 434

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 149/450 (33%), Gaps = 51/450 (11%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ER +  V++DSR      +FV IVG + DGH +I  A+ +GA            D     
Sbjct: 20  ERLVERVATDSRDANEAGLFVPIVGARVDGHDYIEAAVEKGAIVTFWEEGRPQPD----- 74

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             N  ++ V +T + L   A+R   +    ++A+TG++GK+S    V  + +    +   
Sbjct: 75  --NLVVIPVKSTVEALQTAAARYLEEINPLVVAITGSNGKTSTKDMVAVVLEEKFKTHKT 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI--KL 204
            G  ++              P+ + +              +E   +G  Q        K 
Sbjct: 133 AGNFNSD----------VGLPLTVLRMPRDTE-----VAVLEMGMNGFGQIETLSKLAKP 177

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G  H +    +     AK+ +   L       +    DA    +  + +  G
Sbjct: 178 DVAFVTNIGESHGEQVGGRTGIAKAKLEIKAGLKADGRLIV----DADEPLLSGQGYRVG 233

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
               + G                              +   + G  Q+ NA  A    +A
Sbjct: 234 YDETADGKIEVIETTFDASIFKYNGD----------LYELKVLGAHQIRNAAYAIACGLA 283

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGR 383
            G+D A++   L+++ +   R E          I   Y  +  S+   ++ I+++    +
Sbjct: 284 FGLDHAMIQRGLDRIKLTSMRMEKQMFGEA-HLINDAYNASPTSMIAAIETIKSLEGFSK 342

Query: 384 IIVVFGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            ++V G       D       + G +   + D  +V       +  + I   I       
Sbjct: 343 RVLVLGDMYELGADEQMQHEQVGGAVTSPVTDCILV------GDKAKWIADGIQDSRVNV 396

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  EA            V+++ A +G
Sbjct: 397 KMVPTVEEAKALLHHYQRPDTVVLLKASRG 426


>gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 487

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 157/485 (32%), Gaps = 53/485 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF------ 59
           L   D  E +    +      E     V  DSR +  G +FVA+ G + DGH F      
Sbjct: 4   LSLADIAEAVGG-RLHRADGSEIVSASVEFDSRKVAPGGLFVAVPGERVDGHDFAARAVA 62

Query: 60  -----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
                +  A    A A++V    +       +  +T             L    +     
Sbjct: 63  DGAAGVLAAREVDAPAVIVPPVPAEATGLMALAGDTDGSGAAVLAALARLARYVVDRLPR 122

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTG+SGK+S    + Q+ +  G +    G  +                       
Sbjct: 123 LTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPPGSFNNELGHPWTALRADED-------- 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + + A   G      +      G+  N+G  H+    +Q+A   AK  L 
Sbjct: 175 -----TRHLVLELSARGVGHIAKLCEVAPPRIGAVLNVGHAHLGEFGSQEAVARAKGELV 229

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTI 293
           E  LP +  A++ ADD     +  R        L     G  +  + +      +   T+
Sbjct: 230 ES-LPADGVAVLNADDPLVAAMASRTRARVV--LVGESPGAHVRAEDIVLDEQARPSFTL 286

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTN 352
                      PL GE  V NAL AA + + +G     V + L  +  V   R E   T 
Sbjct: 287 VAPQGSAQVSLPLHGEHHVGNALSAAAIALELGATLEQVADRLSGVRRVSARRMEVAETA 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGK---RPIMGKIA 406
                +   Y     S+   LK + ++T GR      V G  G+  +        +G++A
Sbjct: 347 DGVTVVNDAYNANPESMRAALKTLASMTRGRPGRAWAVLGVMGELGESGAQAHDEIGRLA 406

Query: 407 LDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLNK 458
           + L  D  +V  D           A + HG           +   +   A+      L  
Sbjct: 407 VRLNIDRLVVVGDQ---------AAGMHHGASLEGSWGEESVLVPDVDAAVALLRAELRP 457

Query: 459 QDVLV 463
            DV++
Sbjct: 458 GDVVL 462


>gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
 gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
          Length = 451

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 146/467 (31%), Gaps = 52/467 (11%)

Query: 8   YKDFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
                +L+  L   P+   E  +      + +DSR ++ G +FVA+ G+K DGH F+P  
Sbjct: 4   SATLSQLVEVLLASPINLSETALTQVSCGIQTDSRTLKLGEVFVALRGDKFDGHKFVP-- 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                     + A                 P+L V +T K           +    ++ V
Sbjct: 62  ---------TAIAKGAIAAIVDFEYENPGFPVLRVKDTLKAYQQIGRWWRDRFNIPVIGV 112

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    +          +  +G    +     +       P  L +  +     
Sbjct: 113 TGSVGKTTTKELI----------AAVLGTKGQVHKTYGNYNNEIGVPKTLLELGAE---N 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +     G         +   G  TN+G  HI+   +++A   A        +  
Sbjct: 160 DYAVIEMAMRGRGQIAELTQIARPTIGVITNVGTAHIELLGSEEAIAEA-KCELLAEMAA 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +S AII  D+        +  +                L     +               
Sbjct: 219 DSVAIINHDNPLLMATAAKVWHGEVLTYGFSGGDIQGQLLDNDQMEVAG----------I 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PLPG     N L A  +   +GID + +     ++ +  GR +     +    +  
Sbjct: 269 QLPLPLPGRHNATNFLAALAVAKVLGIDWSNLK-AGVEVDMPTGRSQRFTLPNDVIILDE 327

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVT 416
            Y     ++   L+ +      R I V G     G+R Q     +G+    L  D  +V 
Sbjct: 328 TYNAAPEAMIASLQLLADTPGKRKIAVLGAMKELGERSQQLHQRVGETVRKLNLDGLLVL 387

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D    ED E   A    GIP         E +      +   D L+
Sbjct: 388 VD---GEDAEA-MALSAEGIPS-ECFATHAELVARLKTFVQTGDRLL 429


>gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 553

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 152/493 (30%), Gaps = 62/493 (12%)

Query: 2   KLQDLIYKDFPELI-NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +L++LI     +L  +  S    +     +   S+DSR I+    F A+ G   DGH F+
Sbjct: 5   RLKELIRATSGQLFFSADSAMRKEAMNYVLLGTSTDSRTIKRCEAFFALKGENFDGHAFV 64

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A+VVS        +   ++  P ++V++T   L   A+     +   ++A+
Sbjct: 65  ERAVRAGAVALVVSD----LKCAELWQAELPTILVEDTLTALQKLAAYYRQNYLHTLVAI 120

Query: 121 TGTSGKSSV--------------ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           TG+ GK+S               +   + +    G+    +   S       +  +    
Sbjct: 121 TGSVGKTSTREMIAAALRPTLAVSCTGENLNNEIGVPQTVLKVRSACDVAVVEMGMDHAG 180

Query: 167 PIY-----LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            +          ++ +++ G  H+    S   +       ++  A     L  D +    
Sbjct: 181 DLTKLSRLAQPDIAVITNIGYCHIEQLGSQMAI-------MRAKAEIINGLKADGVLLLN 233

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
               +        +  + +   A+         + +              +  K      
Sbjct: 234 ADDPFLRQLAAEQKGKIKQAFVALNTCPPDLPGDCLVATDVKIEVDGCASFIIKLQQAPD 293

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      +    S          P+PGE  V NAL        +     L    L    V
Sbjct: 294 LEKYGTMEAFVDSNRLPRI--KLPVPGEHHVINALFGLATAHLLHQPLTLAANGLRDFSV 351

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFG---CGGDRD 395
           +  R + +        I   Y     S+   +K +  +      R I V G     G+  
Sbjct: 352 IGNR-QRIMNADGVVLINDTYNAAPESIRAGVKTLCFLAHSEKRRAIAVLGGIAELGNMA 410

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                 +G+     AD+A +    P         A +  G        +  +A   A   
Sbjct: 411 DRLHYELGRYLAT-ADLAEIWLCGPY-------VAAVAQG------IADGDQAGDQADSQ 456

Query: 456 LNKQDVLVVAGKG 468
                     GKG
Sbjct: 457 AG--------GKG 461


>gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
 gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
          Length = 825

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 138/385 (35%), Gaps = 26/385 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +        +  I  + +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 4   TIEKVTTLIGARRYGDNDTNIGFILTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +  VV    ++    A+       L V NT + L   A R   +    I+ +TG++GK+
Sbjct: 64  VKNFVV---TNVPKGYASDYPGANFLKVVNTLEALQRLAERHRDEFNIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+   S   +         S  + ++++  P  ++L           V     
Sbjct: 121 MVKEWLYQLLSPSMFVT--------RSPRSYNSQIGVPLSVWLM-----NEQTQVGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+      TNLG  H +   + +     K+ LF          I  
Sbjct: 168 GISMPGEMLALRDIIQPTIAVLTNLGAAHQENFSSMEEKCREKLILF----HDAETVIYD 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            DD    +V+    +     L    +      ++K +    +   +T   +G++  F  P
Sbjct: 224 GDDEVINKVIAEYPDYKGEKLFWSLKNAEAPFYVKNIEKQQSVTVITYIYKGEEDSFSIP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH- 364
                 V NA+++A +   +G+ +  + + + +L  V  R E          I   Y   
Sbjct: 284 FIDNASVQNAIISAVVASKLGLSAEDIDKRMTQLEPVAMRLEVKVGQHGCTLINDSYNSD 343

Query: 365 -TSNSLEMILKNIRTITSGRIIVVF 388
             S  + +   N R    GR   + 
Sbjct: 344 INSLDIALDFMNRRPDHRGRRHTLI 368


>gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 492

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 91/252 (36%), Gaps = 29/252 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M LQ++                     R+++ V+ DSR     ++FV I G + DGH FI
Sbjct: 4   MSLQEITT-----ACGGTYYGEPSLLTREVSGVTIDSRKAGKDFLFVPIKGARVDGHSFI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQ + QGA   +             +  + P ++V +  + L   A          ++ +
Sbjct: 59  PQVMEQGALCTLSEHP---------LSDSFPYILVSSCAQALKDIAEHYRRALGIKVVGI 109

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +G+ GK+S    +  I ++        G  +               P+ + +        
Sbjct: 110 SGSVGKTSTKEMIASILEQKYSVLKTAGNFN----------NEIGLPLTVFQIQKE---H 156

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            V  + +  S    + +RL  + +      TN+G+ H++    +     AK  +F    P
Sbjct: 157 EVAVLEMGISDFQ-EMNRLAKVAQPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRP 215

Query: 240 KESPAIIYADDA 251
             S  +   DD 
Sbjct: 216 GASIILNGDDDK 227


>gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 451

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 28/340 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +VS+DSR +QAG +F+A+ G    G  F+  A  QGA A +V+             ++ P
Sbjct: 32  DVSTDSRRLQAGELFIALRGPNFRGEDFLAAAKGQGAVAAIVA--------EYQPDADLP 83

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            +VV +T   L   A     +      A+TG++GK+S    +Q++ Q  G +   +G  +
Sbjct: 84  QIVVADTLAALQALARDRRERSQAQFFAITGSNGKTSTKEILQRLLQTRGQTLATLGNLN 143

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L +            + + A+  G     +   +      TN
Sbjct: 144 ----------NDIGVPLTLLRLRDEDR---YAVIEMGANHPGEIAALVALARPDVALITN 190

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+    T +    AK  ++         AI+   D  +    +   +   +     
Sbjct: 191 VAPAHLAGFGTLEGVIAAKSEIYAHSDG----AIVLNLDLPAAARWQDQFHDRPQYTFSL 246

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                +    + A     +  + V+G D+   + L G   + NAL A       G+  A 
Sbjct: 247 NIDADVTAHDLAADG--SRFVLRVDGSDYPVAWQLVGRHNIMNALAACTAARLAGVSGAQ 304

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +   L  L +   R   +   +        Y     S + 
Sbjct: 305 MQATLTGLALHQSRLAAIRVGAHTIYDDT-YNANPASFKA 343


>gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
          Length = 243

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 17/196 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 1   MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VDNT   L   A     +    ++ +
Sbjct: 54  KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDNTLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++V   ++ I   +       G          +  +  R T    + +  +   
Sbjct: 108 TGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 167

Query: 177 LSSQGVTHVSVEASSH 192
                    +    + 
Sbjct: 168 CRIIERFTWNSFRGNC 183


>gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
          Length = 480

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 151/476 (31%), Gaps = 37/476 (7%)

Query: 12  PELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            + + ++          +I   V++DSR I+AG +FVA+ G   DGH F+     +G + 
Sbjct: 3   IDALREIVGLEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARRGGKV 62

Query: 71  IVV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---------- 116
            VV        +    +        +L VD+ +  L   A     +              
Sbjct: 63  AVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSGKLKL 122

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK++     +Q+    G +    G  +               P+ + +A S 
Sbjct: 123 VIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFN----------NEIGLPLTVLQADSD 172

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   + + AS  G D   L  I  +  +   +                A+      
Sbjct: 173 ---TEYLVLEMGASKPG-DLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIIT 228

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L     AI+ ADD   + +  R         S    G      KV +  +      +  
Sbjct: 229 SLGPTGVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHASFTLHTPA 288

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           GK    +  +           AA   +A      +             R   V       
Sbjct: 289 GKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVD 348

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA-- 413
            I   Y    +S++  L  +     S R++ V G   +       + G+I          
Sbjct: 349 LIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEI-GRYCAKVGI 407

Query: 414 -IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++    P +++ E   + + H         +   A R   E++  +D++++  KG
Sbjct: 408 PVLIGVGPMAKNIELAYSALRHDGEHHHT-LDEKSAGRLLQEVVRPKDLILI--KG 460


>gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
 gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
          Length = 433

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 140/373 (37%), Gaps = 21/373 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   VV  A            +   
Sbjct: 16  VTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEAGYAPTG------DAHY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  + L   A+    +    I+ +TGT+GK++    +  +  +S    +  G  + 
Sbjct: 70  IIVDNCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTAGNLN- 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                     +   P+ L       +   +  V + AS  G  +  ++  +   G  TN+
Sbjct: 129 ---------NSIGVPLTLL---RLTTEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ L  ++  + I+     +  + + A+           
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDYLRRRKEGSTIFIHYD-NPYLREIAYGLNQITYGSEE 235

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +          + +   +     EGK       L GE+   NAL A  +    G++ A +
Sbjct: 236 ELYVSGRVTGNSPYLTFEWKAGKEGKTHQVQTQLIGEYNFPNALAAVTIGRFFGVEPAKI 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L +      R +     +    I   Y     S+   + N   + +   +++ G   
Sbjct: 296 DKALAEYTPQNNRSQL-KRTADNTLIIDAYNANPTSMMASISNFCKMEAAHKMLILGDMR 354

Query: 393 DRDQGKRPIMGKI 405
           +  +       KI
Sbjct: 355 ELGKDSAEEHQKI 367


>gi|281425031|ref|ZP_06255944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
 gi|281400875|gb|EFB31706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
          Length = 438

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 142/426 (33%), Gaps = 36/426 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR+     IF+A+ G   DG+ F   A+ +G    ++      +        N  +
Sbjct: 16  ITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAE------ADNDRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    V  +           G  + 
Sbjct: 70  ILVDDCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSTVLAERYNVMHTEGNFN- 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P  L       ++  +  V + AS  G  +  +   +   G  TN+
Sbjct: 129 ---------NDVGVPKTLF---RLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +A   ++ ++             
Sbjct: 177 GRAHLLGFGSFEGVKQTKGELYDYLKAHDCLLFLNESNADLVDMARQREMNRIITYGQSD 236

Query: 273 QGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                     CA           T   + + ++    L G + + N   A  + +  G+ 
Sbjct: 237 DANVRGEVIDCAPFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMFAAITIGLHFGVT 296

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   LE       R +     ++   I   Y    +S+   ++N + +     + + 
Sbjct: 297 PEQINHALESYVPANNRSQLE-VTAKNKLIVDAYNANPSSMAAAIENFKLMNVEHKMAIL 355

Query: 389 GCGGD----RDQGKRPIMGKIALDLADIAIV-------TDDNPR-SEDPEKIRAEIIHGI 436
           G   +     D   + ++ K+  D      +       T  N R   + ++++AEI    
Sbjct: 356 GDMRELGEVSDLEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRKFRNVDEVKAEIAAHC 415

Query: 437 PGFIEK 442
           P     
Sbjct: 416 PENCYI 421


>gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
 gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
          Length = 246

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 4   MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHDYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 57  KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++V   ++ I + +       G          +  +  R T    + +  +   
Sbjct: 111 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 170

Query: 177 LSSQGVTHVSVEASSH 192
                    +    + 
Sbjct: 171 CRIIERFTWNSFRGNC 186


>gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis G2136]
          Length = 436

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 131/401 (32%), Gaps = 34/401 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 6   KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 53

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L + A          +  +TG+ GK++V   +  + +R    
Sbjct: 54  EDCVAMDGALKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGD 113

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  +      ++           P+ L              + +  +  G         K
Sbjct: 114 NAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 163

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A    N  R H+                  + L  +  A+I  +DA          N 
Sbjct: 164 PDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNL 223

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L +
Sbjct: 224 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAAAAAALSL 281

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+    V E L+    + GR            I   Y    +S++  +  +  + + R
Sbjct: 282 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAVDVLARMPAPR 341

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
            I V G  G+  + +   M       A     + A    DN
Sbjct: 342 -IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 381


>gi|288800647|ref|ZP_06406104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288332108|gb|EFC70589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 442

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 132/371 (35%), Gaps = 29/371 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            E+++D+R    G IF A+ G   +G+ F  +A+ QG    VV       + +  +  N 
Sbjct: 15  KEITTDTRDCPKGSIFFALKGANFNGNSFAHKALEQGCAYAVVD------ESTPDMIGNE 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VDN    L   A+         I+ +TGT+GK++    +  +  +     + +G  
Sbjct: 69  QYIIVDNVLTTLQQLANHHRKALDTTIIGITGTNGKTTTKELLATVLAQKYNVLYTLGNL 128

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +          +  P  +     L       +  + + AS  G  +  +D ++      T
Sbjct: 129 NND--------IGVPKTL-----LRLNKEHNMAVIEMGASHPGDIKTLVDIVEPNYALIT 175

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H+    +       K  L++ +    + A     +A S ++++           +
Sbjct: 176 NVGRAHLQGFGSFDGVKRTKAELYDFM-EAHNRANNIFINAESADLLEMFSTHCKSESYI 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY--------NALVAAGLC 322
            Y           A        +S   K+ +           +        N L A  + 
Sbjct: 235 AYSPTNSVEASFVAEITANNPFVSFRWKETNNESDTWHNVGTHLIGAYNIANMLAAVSIG 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G++S  + + LE       R + + T      I   Y     S++  L+N   +   
Sbjct: 295 RTMGVESKDICKALENYIPSNNRSQLIKTA-HNTIIMDAYNANPTSMKAALENFIKMDVE 353

Query: 383 RIIVVFGCGGD 393
           R +V+ G   +
Sbjct: 354 RKMVILGDMKE 364


>gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
 gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
          Length = 457

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            P+++   ++     +      + +D+R +Q G +F+A+ G   DGH F+ +A+ QGA A
Sbjct: 23  LPQILAATAVHLDAGQGLTAQGICTDTRGLQPGEVFLALRGANFDGHQFVQRAMEQGAIA 82

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            +             +  + P LVV +T                  ++AVTG+ GK++  
Sbjct: 83  AITDQ---------VLPGDFPQLVVKDTLVAYQTLGRWWRDTFQIPVIAVTGSVGKTTTK 133

Query: 131 SFVQQICQRSG 141
             +  +    G
Sbjct: 134 ELIAAVLGLQG 144


>gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
 gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
          Length = 483

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 82/485 (16%), Positives = 155/485 (31%), Gaps = 45/485 (9%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           D+      E I             +I     +DSR +  G +FVA+ G   DGH F+   
Sbjct: 3   DMTLDALREAIG----LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSV 58

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSN----TPILVVDNTRKFLSLFASRLYGKHPEN--- 116
             +G +  +VS   +         ++      +L V + +  L   A     +       
Sbjct: 59  ARRGGKVAIVSHDRTEILNQGWATADELDQLTVLQVSDPQYALGRLARAHLRQLRAQARG 118

Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++ +TG++GK++     +Q+    G +   +   +          LT      
Sbjct: 119 GTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFN----NEVGLPLTVLEA-- 172

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                    S     + + AS  G D   L  I  +  +   +         +      A
Sbjct: 173 -------DVSTEYLVLEMGASQPG-DIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAA 224

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NK 288
           +     E L     AI+ ADD   + +  R   +G  +     +   + +  +      +
Sbjct: 225 EKATILENLGPSGMAILNADDPRVEAMSGR--TSGRLMYFSTKKNTPVRITDLRLDEAAR 282

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFE 347
               +            L G   V NA+ AA +    G+  A +   L     V   R  
Sbjct: 283 GSFLLHTPEGSAPVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMN 342

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMG 403
            V        I   Y    +S+   L  I    + R +V+        G+        +G
Sbjct: 343 LVHLADGVDLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIG 402

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + A +L    ++T   P ++  E   + +        +  +   A R   E++   D+++
Sbjct: 403 RYAANLGISVLLTV-GPMAKHIESAYSALKRDGES-HQVMDATAAGRLLQEIVRPGDLIL 460

Query: 464 VAGKG 468
           V  KG
Sbjct: 461 V--KG 463


>gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
 gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
          Length = 473

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 148/473 (31%), Gaps = 41/473 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+   +   P    +    +   V  DSR +  G +F A  G + DGH +  +
Sbjct: 1   MITLSLAEIAEIVGGQPHDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAQR 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                      +         A      P +VVD+    L   A     +   +++A+TG
Sbjct: 61  -----------AVEAGAAAVLAARPVGVPAIVVDDVVGALGALARAAVERLGTSVVALTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+S    + Q+ QR G + +  G  +            T                  
Sbjct: 110 SAGKTSTKDLIAQLLQRHGPTVWTPGSFNNEIGLPLTALSATAE-------------TEH 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G  ++  +      G   N+G  H+    +++A   A      E LP++ 
Sbjct: 157 LVLEMGARGIGHIRYLTELTPPRIGLVLNVGSAHLGEFGSREAIAQA-KGEMVEGLPEDG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD   + +  R                     ++          +       D 
Sbjct: 216 CAVLNADDPLVRAMASRTKARVLLFGEAPEADVRGEKVRMTPDGRPV-FELHTPTGCSDV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361
              L GE  V NAL AA +   +G+    + E L +       R E          +   
Sbjct: 275 TMRLYGEHHVSNALAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTVVNDA 334

Query: 362 YAHTSNSLEMILKN------IRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-AD 411
           Y     S+   L+        R    GR   V G     GD    +   +G++A+ L   
Sbjct: 335 YNANPESMRAALRALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVS 394

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +       S        E   G        +   A+      L   DV++V
Sbjct: 395 KLVAVGGREASWLQLGAYNEGSWGEESVH-VSDAQAAVDLLRSELRPGDVVLV 446


>gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
 gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 169/461 (36%), Gaps = 32/461 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            +I  VS+D+R IQ G +FV +VG   DGH ++ QA+ QGA A +  +   L    A   
Sbjct: 12  VRIAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETKRELPQELA--- 68

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P+L V +T K L   A+    +    ++ +TG++GK++             + +  +
Sbjct: 69  -DAPLLFVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKD----------MVAAVL 117

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G    +   A +       P+ + +            + +  S  G  +   +  +    
Sbjct: 118 GTAYKVHKTAGNLNNHIGLPLTVLQLDEE---TDAAVLEMGMSGFGEIELLTNIARPDVA 174

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H+    +++    AK+ +   L           +   + E+   +   G ++
Sbjct: 175 VITNIGDAHLLQLGSREGIAKAKLEIAHGLHSGGILLYNGDEPLLAAELAGMSLPEGTQL 234

Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCI 323
            + G  +        +          +  +G+D     +  P+PG+  V NAL A  +  
Sbjct: 235 QTFGLGESNDWSAADIEVGAVSSAFAVKRKGQDTVSAPYTIPVPGQHNVSNALAAIAIGR 294

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
             GI    +   L  L +   R + V  ++    +   Y     ++   +  +  ++   
Sbjct: 295 RFGISEENIRNGLIGLELTGMRIQPVKAHNGAMILNDAYNANPTAVRAAIDLVGQLSGFR 354

Query: 383 RIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAE---IIHG 435
           R  +V G     G  ++      G  I  D AD  I     P SE               
Sbjct: 355 RKWIVLGDMRELGPEEESLHFETGAYITPDKADAVI--TFGPLSEHTSAGALSQFPAEAK 412

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KGHETVHIV 475
               +   ++ +      E +  QD+++V G +G     IV
Sbjct: 413 GTAIVHFDDKGKLGEWLREQVEPQDLVLVKGSRGVRMEQIV 453


>gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
 gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
          Length = 481

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 72/472 (15%), Positives = 150/472 (31%), Gaps = 23/472 (4%)

Query: 6   LIYKDFPELINQLSIFPMQWR-ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           ++     +++       +    +  +  V+ DSR    G  FVA  G + DG+ F  +A+
Sbjct: 1   MLSMSVRDILEATGASRVAGPCDGVVRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYG-KHPENILAVT 121
           A+ A  ++   A       A  R    +L    D+  +FL   A           ++ VT
Sbjct: 61  ARAATVVLTGPAPKG-CAEAAERHGCALLRAEGDDGEEFLLRLAGAWRRLNPQWTVVGVT 119

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYLAKALSYLSSQ 180
           G+ GK++    +    +         G  + +           P   + +A+     + +
Sbjct: 120 GSVGKTTTKDMLAAGLRARFRVHATAGNFNNLIGLPLTLLSADPSDEVVVAEMGMNHAGE 179

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                +    +  L  +       + GS  ++ R   +     +   +A+  +   L   
Sbjct: 180 LSRLAACARPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALT 239

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                    +                      +   I L        +            
Sbjct: 240 SDNDFAALIEDEYAAPAGVEVLHVGGRPCDDVRAGGIALDDGGLPRFELSFADGW---SE 296

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V + L+A  +C  +G+D    L+ + ++     R E V    R   I  
Sbjct: 297 PCTLGMPGRHVVSDVLLAMAICDRLGVDRHDALDRIARMPQTHMRLEVVTAPGRPRMIDD 356

Query: 361 DYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKI----ALDLADIAIV 415
            Y  + +S+   L  + ++  +GR + V G  G+       + G I    A    D+ ++
Sbjct: 357 SYNASPSSVAAALDVLCSMACTGRRVAVLGEVGELGDEAPRLHGYIGAYAAAKPLDLLVL 416

Query: 416 --TDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             T D           A +  G          +   A+     +L + D+++
Sbjct: 417 VGTHD-----AAAMAEAALTMGFSEDRMERVDDVQAALDLIAPVLGEDDLVL 463


>gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
 gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
          Length = 481

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 11/152 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ VS D+R +  G +FVA+   + DGH F+ QA+ +GA A +VS           +
Sbjct: 21  DWQVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQALGKGAGAALVS------HIPEGV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            ++ P+L+V++    L         +    ++AVTG+ GK+S    ++ +  R G +   
Sbjct: 74  AADAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVGKTSTKEMLRTVLARQGRTHAA 133

Query: 147 IGPTSTIS----SFAQDNRLTTPSPIYLAKAL 174
               +       + A+  R T  + I +    
Sbjct: 134 EASYNNHWGVPLTLARMPRDTQFAVIEIGMNH 165


>gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 483

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 152/483 (31%), Gaps = 41/483 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           D+      E++             +I   V++DSR I+AG +FVA+ G   DGH F+   
Sbjct: 3   DMTIDALREIVG----LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSV 58

Query: 64  IAQGAEAIVV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
             +G +  VV        +    +        +L VD+ +  L   A     +       
Sbjct: 59  ARRGGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARN 118

Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++ +TG++GK++     +Q+    G +    G  +               P+ 
Sbjct: 119 GSGKLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFN----------NEIGLPLT 168

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           + +A S         + + AS  G D   L  I  +  +   +                A
Sbjct: 169 VLQADSD---TEYLVLEMGASKPG-DLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAA 224

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           +       L     AI+ ADD   + +  R         S    G      KV +  +  
Sbjct: 225 EKSQIITSLGPTGVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHAS 284

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +  GK    +  +           AA   +A      +             R   V
Sbjct: 285 FTLHTPAGKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLV 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   I   Y    +S++  L  +     S R++ V G   +       + G+I   
Sbjct: 345 HLADGVDLIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEI-GR 403

Query: 409 LADIA---IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   ++    P +++ E   + + H         +   A R   E++  +D++++ 
Sbjct: 404 YCAKVGIPVLIGVGPMAKNIELAYSALRHDGEHHHT-LDEKSAGRLLQEVVRPKDLILI- 461

Query: 466 GKG 468
            KG
Sbjct: 462 -KG 463


>gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 550

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 83/514 (16%), Positives = 152/514 (29%), Gaps = 79/514 (15%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L+           E     VSSDSR I+AG +FVA+ G K DGH F+ + + +GA  +V+
Sbjct: 40  LLATGGRLWGDRTEAVFRLVSSDSRTIEAGDLFVALRGEKFDGHRFVAEVVRKGAAGLVL 99

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASF 132
            S          +          +T + L   A  R        +LA+TG+SGK++V   
Sbjct: 100 ESPPEEPLPVPVVLV-------ADTLQALGDLAHYRRMQMKGLKVLAITGSSGKTTVKEM 152

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
              I ++       +           +N +  P  +     L+  +      + +  +  
Sbjct: 153 TAAIMEQGRGRQRVLKTRG-----NLNNLIGLPLSL-----LAVDAHHQYAVLEMGMNRF 202

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           G      +  +      TN+   H+           AK  LF  + P  +  +   DD  
Sbjct: 203 GEIARMAEIAQPDIACITNVQEAHLAGLTDVAGVARAKGELFHGMRPWTTLVVNR-DDPR 261

Query: 253 SKEVMKRAHNAGCRV-------------------------------LSVGYQGKFIHLKK 281
              +  +                                          G+      + +
Sbjct: 262 VWRLAGKLPQRRITFGRKPGTTVRATRLRSRGEEGMSFTLTIADVTDYGGHGVSGHRVPQ 321

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGI---------- 327
           V A     + ++   G+      P        +Q    + A G                 
Sbjct: 322 VVASGPAPRTSVRKPGRSPQDAVPCDRLLADGWQGRVHIAALGEHNVQNALAAAALALAA 381

Query: 328 --DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
               A ++  LE       R       +    I   Y    +S+   L+ +  +   R +
Sbjct: 382 GVSPAEIVAGLEGYRPFAKRLRIQPFVAGLKLIDDSYNANPSSMLAALETVHNLRRNRKV 441

Query: 386 VVFGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA------EIIHG 435
           V         G         +G+    L    ++T      E     R       ++   
Sbjct: 442 VAILGDMLELGSHGPAAHRFIGEQVARLGFDYLLTVGEFAGETARAARRAGMDAGQVRAC 501

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           +         +EA  TA   L   D++++ A +G
Sbjct: 502 LDKKEVGAWLLEA--TAKGRLKNDDLVLLKASRG 533


>gi|332885521|gb|EGK05770.1| hypothetical protein HMPREF9456_02572 [Dysgonomonas mossii DSM
           22836]
          Length = 429

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 76/415 (18%), Positives = 151/415 (36%), Gaps = 39/415 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R+     IF A+ G   +G+ +  +AI QG    VV         +        I
Sbjct: 16  ISTDTRNSPKDSIFFALKGANFNGNEYAEKAIDQGCAYAVVDEERYATRPN--------I 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++V ++ + L   A     +  +  I+A+TGT+GK++    +  +  +        G  +
Sbjct: 68  ILVKDSLETLQELARHHRKQFIKKPIIAITGTNGKTTTKELIYSVLSQEYNVLATQGNLN 127

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L +         +  V + AS  G  +   +      G  TN
Sbjct: 128 NH----------IGVPLTLLRIKKE---HEIVIVEMGASHVGEIRFLAEMALPNYGLITN 174

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           LG  HI+   + +    AK  L+E +   +   I          ++ R  + G   +  G
Sbjct: 175 LGHAHIEGFGSFENVVKAKGELYEFIRSTKDGKIFI----DYSNLLLREMSEGITSIYYG 230

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +       KV +I     +      K       + GE+ + NAL A  +   +G+ ++L
Sbjct: 231 LEDDLFISGKVTSISPFLALEWKFGSKRNKVQTNMIGEYNLSNALAAITIGKYLGVKASL 290

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + +E+      R +   T  +   I   Y     S+   L+N   +     +++ G  
Sbjct: 291 ICKAIEEYVPTNNRSQLKKTE-KNMLIIDAYNANPTSMHAALENFDHMDVNHKVLILGDM 349

Query: 392 GDRDQGKRPIMGKIALDLADI----AIVTDDN--------PRSEDPEKIRAEIIH 434
            +          KIA  ++D      +   DN        PR ++ + ++  +  
Sbjct: 350 KELGPDTDMEHQKIADYISDHNFERVMFIGDNFSRVKTKYPRFKNLDDLKEYLKK 404


>gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mesorhizobium sp. BNC1]
 gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chelativorans sp. BNC1]
          Length = 477

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 138/421 (32%), Gaps = 30/421 (7%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +     +L+  +   P       +  +S DSR +Q G  F AI G++ DGH F   A+A 
Sbjct: 3   LLWTSDDLVAAVGGRPFGALPEGVTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLAMAA 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V+S     +   A  R   P +VV +  K L   A+    +    ++AVTG++GK
Sbjct: 63  GAGLLVISE----EKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    ++      G         +               P+ LA+  +           
Sbjct: 119 TTTKEMLRHALSSVGTVHAAARSFNNHWGV----------PLSLARLPAGADFAIFEIGM 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
               +H  +   L  +     +   L       H                 +     AII
Sbjct: 169 ----NHAGEIEPLTQLVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAII 224

Query: 247 YADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             DD   K +   A  AG R              L +     +   VTI V G++     
Sbjct: 225 NRDDQRFKLLADMAAEAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRI 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD-- 361
             PG   V NAL   G     G D + +L  L       GR +        G    +D  
Sbjct: 285 GAPGRHMVQNALSVIGAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDES 344

Query: 362 YAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGK----IALDLADIAI 414
           Y     S++  L+   +      GR I V G   +       +       IA    DI +
Sbjct: 345 YNANPASMKAALQVLDSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILL 404

Query: 415 V 415
           +
Sbjct: 405 L 405


>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
 gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
          Length = 455

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 68/454 (14%), Positives = 151/454 (33%), Gaps = 41/454 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              E  +  +S DSR ++   +FV ++G K D H F+ QA   GA A + S   +  +  
Sbjct: 20  GDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAAASLTSEHDTCPEGI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                   ++ V++T+K L      +  +    ++ +TG+ GK++    +         +
Sbjct: 80  TGA-----LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMIAAALSAGYRT 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                  ++         +T               +  +  + +  S  G  +   D  +
Sbjct: 135 FKTPANHNSQ----VGVPITISDISE---------ADEIGVLELGMSEPGEMEVIADIAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +     TN+G  HI+   +++     K+R+ + +    +  +   ++       K     
Sbjct: 182 VDTAVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKDGCET 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L             +     +    +         +  + GE  + NAL A  +  
Sbjct: 242 SFYGLGAN---CSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVAD 298

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSG 382
              +  A   E L+       R +     +    I   Y  + +S++  ++ + ++    
Sbjct: 299 HYHVPLADAAEALKTFDGFKNRQQIYEKGNI-TIIDDTYNASPDSMKAGIRVLASLTDRK 357

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
           R I V       G+        +G    +     ++T           +  EI  G+ G 
Sbjct: 358 RRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVIT--------YGALAKEIARGVEGK 409

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E+  + E      ++L + D ++   KG
Sbjct: 410 VKTTVFEEEQKEEMTEYLEKLLREGDAVLF--KG 441


>gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
 gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
          Length = 483

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 152/483 (31%), Gaps = 41/483 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           D+      E++             +I   V++DSR I+AG +FVA+ G   DGH F+   
Sbjct: 3   DMTIDALREIVG----LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSV 58

Query: 64  IAQGAEAIVV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--- 116
             +G +  VV        +    +        +L VD+ +  L   A     +       
Sbjct: 59  ARRGGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARN 118

Query: 117 -------ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++ +TG++GK++     +Q+    G +    G  +               P+ 
Sbjct: 119 GSGKLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFN----------NEIGLPLT 168

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           + +A S         + + AS  G D   L  I  +  +   +                A
Sbjct: 169 VLQADSD---TEYLVLEMGASKPG-DLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAA 224

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           +       L     AI+ ADD   + +  R         S    G      KV +  +  
Sbjct: 225 EKSQIITSLGPTGVAILNADDPRVEAMSGRTAGRLIYFSSQKATGVRATHLKVDSDSHAS 284

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +  GK    +  +           AA   +A      +             R   V
Sbjct: 285 FTLHTPAGKAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLV 344

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   I   Y    +S++  L  +     S R++ V G   +       + G+I   
Sbjct: 345 HLADAVDLIDDAYNANPDSVKAALDVLSKYAASRRVVAVLGDMLELGVAAPQLHGEI-GR 403

Query: 409 LADIA---IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   ++    P +++ E   + + H         +   A R   E++  +D++++ 
Sbjct: 404 YCAKVGIPVLIGVGPMAKNIELAYSALRHDGEHHHT-LDEKSAGRLLQEVVRPKDLILI- 461

Query: 466 GKG 468
            KG
Sbjct: 462 -KG 463


>gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate
           [Corynebacterium glutamicum]
          Length = 293

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 102/294 (34%), Gaps = 33/294 (11%)

Query: 6   LIYKDFPELINQLS--IFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +   +      +  ++  V  DSR +  G +F+A+ G + DGH F   
Sbjct: 1   MITMTLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAAT 60

Query: 63  AIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNT-------RKFLSLFASRLYGK 112
           AI +GA A++ +    +         I+ +   +             + LS  A  +   
Sbjct: 61  AIEKGAVAVLAAREVDVPAIVVPPVKIQESNADIYAHEPDGHGAAVVEALSRLARHVVDI 120

Query: 113 ----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               H  N++A+TG++GK+S   F+  +  + G +    G  +         R TT    
Sbjct: 121 CVAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTVRCTT---- 176

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             + A   G  +H  +       +  N+G  H+    +++    
Sbjct: 177 ----------DTKYLVAEMSARGIGHIKHLTEIRPPRIAAVLNVGHAHLGEFGSRENIAQ 226

Query: 229 AKMRLFE--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           AK  + E          A++ ADD +   +  R         +   Q K     
Sbjct: 227 AKGEIIEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYW 280


>gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
 gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
          Length = 455

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 151/454 (33%), Gaps = 41/454 (9%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              E  +  +S DSR ++   +FV ++G K D H F+ QA   GA A + S   +  +  
Sbjct: 20  GDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAAASLTSEHDTCPEGI 79

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                   ++ V++T+K L      +  +    ++ +TG+ GK++    +         +
Sbjct: 80  TGA-----LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMIAAALSAGYRT 134

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                  ++         +T               S  +  + +  S  G  +   D  +
Sbjct: 135 FKTPANHNSQ----VGVPITISDISD---------SDEIGVLELGMSEPGEMEVIADIAR 181

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +     TN+G  HI+   +++     K+R+ + +    +  +   ++       K     
Sbjct: 182 VDTAVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKDGCET 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L             +     +    +         +  + GE  + NAL A  +  
Sbjct: 242 SFYGLGAN---CSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVAD 298

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSG 382
              +  A   E L+       R +     +    I   Y  + +S++  ++ + ++    
Sbjct: 299 HYHVPLADAAEALKTFDGFKNRQQIYEKGNI-TIIDDTYNASPDSMKAGIRVLASLTDRK 357

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG- 438
           R I V       G+        +G    +     ++T           +  EI  G+ G 
Sbjct: 358 RRIAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVIT--------YGALAKEIARGVEGK 409

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E+  + E      ++L + D ++   KG
Sbjct: 410 VKTTVFEEEQKEEMTEYLEKLLREGDAVLF--KG 441


>gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 462

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 68/419 (16%), Positives = 138/419 (32%), Gaps = 46/419 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+   +    +  ++ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKM------TLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKFLSLFASRL-YG 111
           FIP             +A +    +     + P+      LVV +  K +   A      
Sbjct: 54  FIP------------VAATAGAVATFVAADHLPVTTKLITLVVPDPLKAMQQLAQYYLLM 101

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++A+TG++GK++       I            P +  +       + +  P    
Sbjct: 102 KVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT-- 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                     V  + +     G   H L  +     +   +  +        +       
Sbjct: 158 ---------EVLVLEMGMDRPG-QLHALSTLAEPDVAVITMIGEAHIEFFKTRDKIADAK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
               + L  +   I   D+   +E  K+      R     +    I    +    N  + 
Sbjct: 208 MEITDGLKDDGTFIFNGDEPLLQERAKKITQE--RETFGLHPENTIFAHSISGHRNHTEF 265

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+     D  F  P+ GE+ V NAL A  +     +   ++ + L    V   R +++  
Sbjct: 266 TVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHVKPEIMQKALAHFQVTANRTQWLIG 324

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +     +   Y     +++ ++ +    T +GR I V G   +  +    +   +A  L
Sbjct: 325 DVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHIAVLGDMLELGEQSPALHASLAEAL 383


>gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
          Length = 457

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 138/396 (34%), Gaps = 34/396 (8%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +   ++  +       ++      +S DSR +    +F+AI G   DGH F+ + + +G
Sbjct: 6   SEINNVLGDIKNLSEGKKDFLNFKNISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVLNKG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +++V+      +     + SN P  VV++T +     A     K    I+A+TG+ GK+
Sbjct: 66  VKSVVI-----KKGMQKLLPSNFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  +  + G         +          LT  +                  + +
Sbjct: 121 TTKEMIGGVLNKLGRIKLSHANFN----NEIGVGLTILAA-----------DIEDKVLVL 165

Query: 188 EASSHGLDQ--HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           E    GL Q  +     +      TN+G  HI    +++   +A      + L  E   I
Sbjct: 166 EMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKENITHA-KCEISKFLNPEGVVI 224

Query: 246 IYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           I A+D + ++ +K                  +        +   +N    TI +E   F+
Sbjct: 225 IPANDPFLEKTLKEFWKGRVIKVRLLNIANQKESIKKDDNLRGFYNPSNKTILIEENTFE 284

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
             F         N L A  +   +GID A    +      + GR + + +          
Sbjct: 285 ISFEGF--HNASNFLFAYAVAKELGIDFASS--NKFDFVSLDGRNKILKSVKTTIYDE-S 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           Y  +  S++  +KN+      +   +FG   +  + 
Sbjct: 340 YNASPESVKACIKNLLEKPRNKF-FIFGSMQELGKE 374


>gi|34540839|ref|NP_905318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
 gi|34397153|gb|AAQ66217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
          Length = 420

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 132/374 (35%), Gaps = 29/374 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   +  IF A+ G   DG+ F   A+ +G    VV     ++D           
Sbjct: 2   VTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVVRDE--------RY 53

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+VD+    L   A+         ++ +TGT+GK++    +  +   +    +  G  + 
Sbjct: 54  LLVDDVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNN 113

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L +  +      +  + + A+  G         +   G  TN+
Sbjct: 114 H----------IGVPLTLLRLKAEHR---IAIIEMGANKPGDIAELTRIARPNYGLITNI 160

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ +  +     +  DD    ++ +     G + +S G 
Sbjct: 161 GRAHLQGFGSLEGVRRTKGELYDFIRAEGGILFLNFDDDTLIDMSQ-----GLQSVSYGT 215

Query: 273 QGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                   ++ A +       +     +      L G++ + NAL A        +    
Sbjct: 216 SADATVRGRIVANNTPYLCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEA 275

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           ++  L        R +++ T      I   Y     S+ + L N  ++ + + +V+    
Sbjct: 276 IVSALATYKPSNNRSQWIETERGNSLIVDAYNANPVSMRVALDNFDSLHTDKPLVLILGD 335

Query: 392 GDR--DQGKRPIMG 403
            +    + KR  M 
Sbjct: 336 MNELGAESKREHMA 349


>gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 447

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 144/471 (30%), Gaps = 43/471 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+   +           +      DSR  Q G +F+A  G   DGH +  QA 
Sbjct: 1   MIPLSVGEIAAVVGGTVSGDGSVTVTAPAVLDSRRAQQGSLFLAFAGEHVDGHAYAEQAG 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTG 122
             GA A++ S                P +V ++T+  L   A  + G+  +   +  VTG
Sbjct: 61  QAGAAAVLGSRPTP-----------LPTVVAEDTQAALQALAVHVVGRLRDRLTVFGVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  +   +G +    G  +           T              ++   
Sbjct: 110 SQGKTSTKDLLAAVLSSAGQTIATFGSFNNELGVPLTMLRT-------------EATTRF 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G        +        N+G+ H+    +++A   AK  L  + L    
Sbjct: 157 LALEMGARHLGDISELTGLVAPDIAVVLNVGQAHLGEFGSREAIAKAKGEL-VQGLAPGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +                      L        +   T+         
Sbjct: 216 TAVLNADDPRVAAMRSLTDRPVL-TFGRTEHADVRALGLALDRLGRPSFTLRTADASAPV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G  Q  NA  A    +  G+        L    +   R E     S    +   Y
Sbjct: 275 SLPHVGAHQALNASAAVAAGLVAGVPLDTAAAMLATASLSRWRMEPRDLASGAILLNDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
               +S    L  +  I   R I V G     GD  +     +G+ A   AD  +VT   
Sbjct: 335 NANPDSTRAALDALAAIEGRRHIAVLGEMLELGDDSEVWHRAVGEYAAARAD-VVVT--- 390

Query: 420 PRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                  K    I  G     +   +   A+      L   DV++V A +G
Sbjct: 391 -----VGKAALRIAEGAGDRAVALADNGAAVHWLRNHLAADDVVLVKASRG 436


>gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
 gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
          Length = 474

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 130/390 (33%), Gaps = 16/390 (4%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++       DSR ++ G IFVA  G   DG+ F  +A+  GA A+V++     +  S  
Sbjct: 22  ADQVCRGCVIDSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAGAVVMTREPEAELVSLA 81

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 IL+ D+  +FL   A     +    ++ +TG+ GK++    +  +  +      
Sbjct: 82  QDKGCAILLTDDPEEFLLRLAHTYRLELGCLVVGITGSIGKTTTKDVLAAVLAKRYRVWA 141

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  + +        L+ P+   +      ++         ++++  L      G   I
Sbjct: 142 TKGNFNNLIGMPL-TVLSAPADTEVLVLEMGMNHFHEIERLSQSANPNLAIVSKIGTSHI 200

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               +          +         ++            ++  +D ++  +         
Sbjct: 201 GILGS---------RENIARAKAEIVQGMCAAGDFLPLLVLGGEDDFTPFIRDTFAQPAG 251

Query: 266 RVLS----VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             +                +V             +G+  D +  +PG   V NA+ AA +
Sbjct: 252 IDVMLAGVSDDDEVRARDVRVDDEGRPVFTLDFGQGETIDTMLAIPGVQSVPNAVKAAAV 311

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-T 380
              +G+    +      L +   R E     S    I   Y  ++ S+   L  + ++  
Sbjct: 312 AYRLGVTPEQIDAAFRGLTITGHRQEIKRAKSGARVIDDSYNASAESMAAGLDLLCSLSC 371

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +G  + + G  G+    + P M ++    A
Sbjct: 372 TGSRMAILGEMGEMG-DEAPRMHELVGAYA 400


>gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
 gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
          Length = 456

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 148/446 (33%), Gaps = 49/446 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR I  G +FV +   + DGH FI  A   GA A +                  P L+
Sbjct: 31  FDSRLIGKGDLFVPLKVAR-DGHDFIETAFENGAVATLSEKEVE----------GHPYLL 79

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           VD+        A  +  K   ++LAVTG++GK++    + Q+   +  +    G      
Sbjct: 80  VDDVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKDMLAQLLSTTYKTYKTQGN----- 134

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
               +N +  P              +G   + +E     L    L        +      
Sbjct: 135 ---YNNEIGLP-------YTVLHMPEGTEKLVLEMGQDHLGDIHLLSEIAHPKAAIVTLI 184

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
                   +     AK +L           ++   D   ++ +                G
Sbjct: 185 GEAHLEFFKDRTEIAKGKLQIADGMPAGGLLLVPADPIVEDFLPNQQELV-------RFG 237

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +   ++       K  +T      +     P+ G++   NA++A+ + +  G+    +  
Sbjct: 238 EGADIRITKLDERKDSLTFEANFLEEAIDLPVTGKYNATNAMIASYVALKEGVSEEAIRA 297

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG 391
             + L +   R E+    +    +   Y     ++ +IL+   TI    +GR + V    
Sbjct: 298 SFKGLELTKNRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIPANPNGRKLAVLADM 357

Query: 392 ---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-----GIPGFIEK 442
              G++       M   ++ D+ D  I    +       ++ +++             E+
Sbjct: 358 KELGEQSIDLHNQMILSLSPDVLDTVIFYGQDIAG--LAQLASQMFPLGHVYYFKKTAEE 415

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
               + ++   E L +QD +++  KG
Sbjct: 416 DQFEDLVKQVKESLKEQDQILI--KG 439


>gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
 gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
          Length = 849

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 156/463 (33%), Gaps = 32/463 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D  +L+            R+    S DSR    G +F+A+   ++DGH +I  A+A GA 
Sbjct: 8   DLDDLLAVGGRLTAPPVTRRFTGFSYDSRLTGVGELFLALRTPRDDGHAYITDALASGAA 67

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV ++         T  +N  +++ D+     + +A+    +    ++ VTG+ GK+S 
Sbjct: 68  GIVCAT-------PPTESANATVIIADDPALLAARWAAVRLRQVAPLVVGVTGSVGKTST 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +          +  +   +      +        P+ LA+         + +     
Sbjct: 121 TRAI----------AAVLAGIAPTFRSRRSFNSLIGLPVSLARLQDDHRFAVLEYG---- 166

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +++  +  RL  +     +                A    +     E LP +  A++  D
Sbjct: 167 TAYPGELRRLTTLFPPQIAVVTSASPMRLSAFGSVAGLTREFGALVEALPADGWAVLNGD 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +            + G  G  +  + +    +  QV +S  G   D   PL GE
Sbjct: 227 DPTVAALRAVTLAQVLTFGAGG--GCDLRAETLRFGLDGTQVRLSYGGASVDAAIPLLGE 284

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V  AL A G+ +A G+        L  +    GR       +    +         ++
Sbjct: 285 PAVGAALAAVGVGLACGMSLEQAAARLAHIEPPAGRLRPHPARNGAILLDDTVGAEPAAM 344

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPI------MGKIALDLADIAIVTDDNPRSE 423
              L+ +  + + R I V G         R        +G +A  +AD+ I   D     
Sbjct: 345 LAALRTLAALPARRRIAVLGDLPADSDDPRNEKNVCTAIGTLAAQVADVLIWKGD--AGT 402

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  +I   +P  I       A+        + D+++V G
Sbjct: 403 SVIHAARQIRPDLPATI-VHTIAAALEAVPSDTGEGDLILVCG 444


>gi|146299078|ref|YP_001193669.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium johnsoniae
           UW101]
 gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101]
          Length = 822

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 128/373 (34%), Gaps = 31/373 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAG--WIFVAIVGNKEDGHLF 59
            L+ LI     E             +  ++ +S DSR +Q G   +F+A+ G   D HL+
Sbjct: 4   NLKSLIPVLNAEWTG-------SDTDIFVDHISIDSRSLQNGPQTLFIALSGANNDAHLY 56

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I + I +G         +++Q     ++      VV NT K L   A+         I+ 
Sbjct: 57  IAELIEKGV------QNFAVQYIPENVKGKANFFVVKNTLKALQELAAYYRDLFDFPIIG 110

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK+ V  ++  +                 S  + ++++  P  +     ++    
Sbjct: 111 LTGSNGKTIVKEWLNFLLSPDYNI--------IRSPKSYNSQVGVPLSV-----IAINEK 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             +       S+     +    IK   G  TN+G  H +  +      N K+ LF++   
Sbjct: 158 HNLGIFEAGISTVNEMVNLEKIIKPNIGVLTNIGSAHDEGFENLTQKINEKLLLFKKSAV 217

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                     D    +   +       + S  +      +  +         TI  + KD
Sbjct: 218 IIYQKNELV-DKCLLDFSAQYPLENRALFSWSFADASADVFILKKETKNDSTTIKYQYKD 276

Query: 300 --FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F+   P      + NA+    + +    D  ++   +E L+ V  R E          
Sbjct: 277 EIFNLEIPFSDSASIENAISCLLVLLHFEYDFTIIQNRMEMLYPVEMRLEVKNGIHNCSL 336

Query: 358 IYVDYAHTSNSLE 370
           I   Y+    SL+
Sbjct: 337 IDDSYSSDFQSLK 349


>gi|164688450|ref|ZP_02212478.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
 gi|164602863|gb|EDQ96328.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
          Length = 175

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 6/145 (4%)

Query: 11  FPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             EL+N  S       E    INE+  DSR      +F AI+G   DGH FI  AI  G 
Sbjct: 6   IEELVNATSGDLTSKSEEVTSINELVIDSRIANKNSVFFAIIGESLDGHKFINSAIENGC 65

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           + I+ + + + +     I  +  I+ V+NT   L   A     K     + +TG+ GK+S
Sbjct: 66  KTIIKNKSNNFE----IIGEDLNIIEVENTEFALGDIARYYKSKFDIPYIGITGSVGKTS 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTI 153
               V         +    G  +  
Sbjct: 122 TRDMVFSAVSSKFKTLKNTGNLNNQ 146


>gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
 gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
          Length = 468

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 147/372 (39%), Gaps = 19/372 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V         
Sbjct: 17  LHGEDVRVRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH------- 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I +    
Sbjct: 70  -VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILE---H 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++ Q       +S  ++N +  P  +  A   +  +        + A   G   +  D +
Sbjct: 126 AAAQSSTVVYANSGNRNNEIGLPLAVIAAPDDADFA-----VYEMGAGKLGDIGYLTDIV 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H++   +       K  ++   L     A+I  DDA++    ++   
Sbjct: 181 TPDVALVNNIAPAHLERMGSLLGVARTKGEIYAA-LRPGGTAVINMDDAFALWFEQQCVP 239

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           AGC VL  G Q    I    +    +  +  +     +      L G   V NAL AA +
Sbjct: 240 AGCAVLRFGLQATADITAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAM 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  GI    +   L     VPGR            I   Y     SL++ +  + T  +
Sbjct: 300 ALVAGIPLPQIAAGLGLARSVPGRQVAHALPGGAVLIDDSYNANPGSLDVAIDTLTT-AA 358

Query: 382 GRIIVVFGCGGD 393
           G   +V G   +
Sbjct: 359 GPGWLVLGDMRE 370


>gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
 gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
          Length = 477

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 134/375 (35%), Gaps = 31/375 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R I  G +FVA+   + DGH F+ QA+ +GA A +VS           + ++ 
Sbjct: 23  SGVSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEKGAAAALVSR------IPEGVDNSE 75

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +L+VD+ +  L         +    ++AVTG+ GK+S    ++ +    G         
Sbjct: 76  KLLLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTKEMLRTVLSEQGTVHAAEKSY 135

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA             + +  +  G         +      T
Sbjct: 136 NNHWGV----------PLTLA---RMPKDADFAVIEIGMNHPGEIAPLARMARPHVAMVT 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H+   +  +     K  +FE  L  +  AI   D A S  +  +A     + +S 
Sbjct: 183 IVAPAHLAAFENLEGIAREKASIFEG-LEPDGIAIYNGDLAVSGILRDKAAETARKSISF 241

Query: 271 GYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G   G    L  V  +      T         F   +PG     NA+    +  A+ +D 
Sbjct: 242 GETAGTHHRLTSVQVMDACTVATGRAWRVPLLFKVMVPGRHFAMNAMGVMAVISALRLDR 301

Query: 330 ALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           AL +  L + +   GR           + R     +D A+ SN   +         +G  
Sbjct: 302 ALAVNALAQWNPGAGRGLREQIRLDPVDDRLTLELIDDAYNSNPASLGAALEVLAAAGTH 361

Query: 385 IVVFGCGGDRDQGKR 399
             V    G RD+G+R
Sbjct: 362 DHV----GRRDKGRR 372


>gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 470

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 160/464 (34%), Gaps = 39/464 (8%)

Query: 14  LINQLSIFPMQWRERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L  +L +      +  +  +  +DSR I+ G IFVA  G   DGHLF+  A+ +GA   +
Sbjct: 13  LGGRLVVRGDDTPDTLVAGLVDTDSRLIEPGDIFVAKPGETTDGHLFVGTAVERGAALAI 72

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA----SRLYGKHPENILAVTGTSGKSS 128
           V                   +VV +    LS  A    +R+       I+ +TG++GK++
Sbjct: 73  VERELDDP---------VSQIVVPDAVTALSDLARDVVARVREHGRLRIVGITGSNGKTT 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + + +I    G +       +            T    +L                  
Sbjct: 124 TKNLLARILSDEGETVSPRASFNNEVGAPLTMLRVTEDTRFL-------------VSEFG 170

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS+ G   H    +    G    +G  H       ++ F A          +   A++  
Sbjct: 171 ASAPGAIAHLAGLVTPDVGVVLMVGMAHAGGFGGIESTFRA-KSELVHATREGGLAVLNV 229

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD     +   A   G  V   G   +  +    V    +  +  + V+G+ F     + 
Sbjct: 230 DDPRVAAMEPFARERGQDVRWFGRGERAAVRAVDVEVSASGTRADLLVDGEPFTLTLRVL 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTS 366
           GE  V NAL A     A+G+ +A  +  LE + +    R + +G++     I   Y  + 
Sbjct: 290 GEHHVMNALAALATATALGVPAAEAIARLETVEIAERWRMQPLGSDRV-RIINDAYNASP 348

Query: 367 NSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNP 420
           +S+   L+ +  I     R + V G     G+    +   +G +A+ L     +V     
Sbjct: 349 DSMAAALRTLAQITGPGERTVAVLGAMSELGEYADEEHDRVGLLAVRLRIQRIVVIGPEA 408

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           R    E I      G   F    +           L   D ++V
Sbjct: 409 RRMYLEAIAQGSWDGEAVFFADADAA--YDYLATELRDGDRVLV 450


>gi|297516905|ref|ZP_06935291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 153

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 13/153 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILA 119
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N  ++ 
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           VTGT+GK++    + Q  Q  G +S  +G    
Sbjct: 114 VTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGN 146


>gi|144897242|emb|CAM74106.1| hypothetical protein MGR_2077 [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 112

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 6/95 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
               I  ++ DSR +  G +F A+ G+K DG  FIPQA+AQGA  IV  +    +  +A 
Sbjct: 14  ANPLITAITCDSRKVGPGTLFFALSGSKADGRAFIPQAVAQGAVVIVAETGTQAETGTAL 73

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
                 ++ VDN R+  +L A+ L+G+ PE + A+
Sbjct: 74  ------LVTVDNPRRAYALAAAPLHGRQPEVMAAI 102


>gi|332829642|gb|EGK02288.1| hypothetical protein HMPREF9455_01558 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 428

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 143/408 (35%), Gaps = 38/408 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           VS+D+R+     IF A+ G   +G+ +  +AI  G    +V  +      +        I
Sbjct: 16  VSTDTRNSPKDSIFFALKGANFNGNEYAEKAIDSGCSYAIVDESKYATRPN--------I 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V++    L   A+    +    ++ +TGT+GK++    +  +  +        G  + 
Sbjct: 68  ILVEDCLDTLQKLANHHRKQLKTPVIGITGTNGKTTTKELITSVLSQEYNVLATQGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L +         +  + + AS  G  +   +      G  TN+
Sbjct: 128 H----------IGVPLTLLRIKKE---HEIAIIEMGASHVGEIKVLSEMAMPNYGVITNI 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  HI+   + +    AK  L+E +       I    D      + R  + G   +  G 
Sbjct: 175 GHAHIEGFGSYENVIKAKGELYEYIRSTRDGKIFIDYDNS----LLREMSEGITSIYYGL 230

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +       KV +I    +       +       L GE+ + NAL A  +   +G+ ++L+
Sbjct: 231 EEDLFISGKVLSIRPFLEFEWKFGTRRNKVKTNLIGEYNLSNALAAITIGKYLGVKASLI 290

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + +E+      R +      R   I   Y     S+   L+N   +     +++ G   
Sbjct: 291 CKAIEEYQPTNNRSQL-KETDRNMLIIDAYNANPTSMHAALENFDHMDVNHKVLILGDMK 349

Query: 393 DRDQGKRPIMGKIAL----DLADIAIVTDDN--------PRSEDPEKI 428
           +          K+A        D  I   DN        PR +D + +
Sbjct: 350 ELGPDTDLEHQKVADYVSHHNFDRVIFVGDNFSRIITDYPRFKDLDSL 397


>gi|304314889|ref|YP_003850036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588348|gb|ADL58723.1| predicted UDP-N-acetylmuramyl tripeptide synthase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 469

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 81/431 (18%), Positives = 147/431 (34%), Gaps = 51/431 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENI 117
           I  A  +G  AI+           A+   + PI++VD      +L  S    +       
Sbjct: 47  IQIASERGVAAIITQD----LRSDASKVLDVPIILVDRIEIANALALSWTINRFASSSRR 102

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GKS+    +  I   +G SS+        ++ ++    T   P+         
Sbjct: 103 IAVTGTNGKSTTTHMINHIITTAGRSSYT-------NTDSRSEFNTLIDPVVAQHIAEAA 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLD---------GIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           S + +  + +E S       R+           I+      TN+  DHI   ++    F 
Sbjct: 156 SREQLEFMVIEVSEVQGWLGRVMRDHAQLMTSAIQPEMVVITNVAMDHIGLVESVDDVFR 215

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                          A++ +DD   + +         R +  G  G   +        + 
Sbjct: 216 EV--SGALRAMDSGVAVLNSDDERVRAMADINPL--LRTVFYGSHGPVRYTGNGIHCGD- 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                  +        P  GE  + N L A    + +G     V   +E    +  RF  
Sbjct: 271 -------DLIIQTDELPFTGEHFIQNTLAAITAALELGFSYEDVRRGVETYRALKRRF-- 321

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-AL 407
                   R+  D+AH  + +   +++      GR+ VV    G R +    +  +  A 
Sbjct: 322 -THLMDNPRVIDDFAHNPDGIRATVRSAACDLKGRLWVVNAIRGSRGEDINIMNAEALAE 380

Query: 408 DLADI---AIVTD-------DNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEM 455
            L D+    IVT         N   E+  ++   ++   GI G+    N  +A+R  +E 
Sbjct: 381 SLKDLDVELIVTSSSDLVDEQNRVLENERRVFLHVLDENGI-GYTHIENLRDALRRVLEN 439

Query: 456 LNKQDVLVVAG 466
               D +++ G
Sbjct: 440 AEPSDTVLLLG 450


>gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare]
          Length = 415

 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 120/355 (33%), Gaps = 28/355 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R I    +F+A+ G+  + + F  +A+ +GA  +++       D +         
Sbjct: 16  VCTDTRKISPNSLFIALKGDNYNANEFAQEALNKGALFVIIDDKKYYTDENKM------- 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V+N+ + L   A+    +    I+A+TG++GK++    +  +  +   +   IG  + 
Sbjct: 69  LLVNNSLQALQELANYHRNQLGLPIIALTGSNGKTTTKELINVVLSKKYKTIATIGNLNN 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L    S      +  V + A+     +      +   G  TN 
Sbjct: 129 H----------IGVPLTLL---SIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNF 175

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  ++  L      A +  DD                +    +
Sbjct: 176 GKAHLEGFGGIEGVIKGKSEMYTYLKTHNKTAFVNLDD-------SIQEEKTQHINRYTF 228

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    +     +    + ++    +    L G +   N  VA  +     +    +
Sbjct: 229 STDNNKKANIIINKIEANPFVKIKYNGIEIQSNLIGIYNSNNINVAISIGTYFNVSEQDI 288

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            + +E       R + +        I   Y    +S+   + N + +   +I  +
Sbjct: 289 KQAIENYIPANNRSQLI-EKGNNKIILDAYNANPSSMAAAISNFQQLDGSKIAFL 342


>gi|258509534|ref|YP_003172285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
 gi|257149461|emb|CAR88434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 462

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 136/411 (33%), Gaps = 32/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++      + +++     +         V+ DSR ++ G +FV + G + DGH FI
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVA------TGVAFDSRRLKPGMLFVPLRGER-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENILA 119
           P        A   + A  + +    + +  P LVV +    +   A      K    ++A
Sbjct: 56  PA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       I            P +  +       + +  P            
Sbjct: 110 ITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT---------- 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +     G   H L  +     +   +  +        +A          + L 
Sbjct: 158 -EVLVLEMGMDRPG-QLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLK 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++   I   D+     ++ RA        + G   +        + H         +  +
Sbjct: 216 EDGTFIFNGDEP---LLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVEQWPE 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ GE+ V NAL A  +     +    + + L    V   R +++  +     + 
Sbjct: 273 LTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALVHFQVTANRTQWLIGDVGEQILS 332

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             Y     +++ ++ +     + GR I V G   +  +  R +   +A  L
Sbjct: 333 DVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGEQSRALHAGLADAL 383


>gi|259650801|dbj|BAI42963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 463

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 136/411 (33%), Gaps = 32/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++      + +++     +         V+ DSR ++ G +FV + G + DGH FI
Sbjct: 4   MTLAEIARVVKAQPLSETVGSQVA------TGVAFDSRRLKPGMLFVPLRGER-DGHEFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENILA 119
           P        A   + A  + +    + +  P LVV +    +   A      K    ++A
Sbjct: 57  PA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVA 110

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       I            P +  +       + +  P            
Sbjct: 111 ITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT---------- 158

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +     G   H L  +     +   +  +        +A          + L 
Sbjct: 159 -EVLVLEMGMDRPG-QLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLK 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++   I   D+     ++ RA        + G   +        + H         +  +
Sbjct: 217 EDGTFIFNGDEP---LLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVEQWPE 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ GE+ V NAL A  +     +    + + L    V   R +++  +     + 
Sbjct: 274 LTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALVHFQVTANRTQWLIGDVGEQILS 333

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             Y     +++ ++ +     + GR I V G   +  +  R +   +A  L
Sbjct: 334 DVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGEQSRALHAGLADAL 384


>gi|199598809|ref|ZP_03212221.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
 gi|199590314|gb|EDY98408.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
          Length = 462

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 136/411 (33%), Gaps = 32/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++      + +++     +         V+ DSR ++ G +FV + G + DGH FI
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVA------TGVAFDSRRLKPGMLFVPLRGER-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENILA 119
           P        A   + A  + +    + +  P LVV +    +   A      K    ++A
Sbjct: 56  PA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       I            P +  +       + +  P            
Sbjct: 110 ITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT---------- 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +     G   H L  +     +   +  +        +A          + L 
Sbjct: 158 -EVLVLEMGMDRPG-QLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLK 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++   I   D+     ++ RA        + G   +        + H         +  +
Sbjct: 216 EDGTFIFNGDEP---LLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVEQWPE 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ GE+ V NAL A  +     +    + + L    V   R +++  +     + 
Sbjct: 273 LTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALAHFQVTANRTQWLIGDVGEQILS 332

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             Y     +++ ++ +     + GR I V G   +  +  R +   +A  L
Sbjct: 333 DVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGEQSRALHAGLADAL 383


>gi|291288107|ref|YP_003504923.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885267|gb|ADD68967.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 452

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 73/449 (16%), Positives = 144/449 (32%), Gaps = 43/449 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +++I     DSR  + G  FVA  G K DG+ +    +  GA  ++V+     +      
Sbjct: 21  DQQIRNFVIDSRQSRKGSCFVAFKGEKTDGNRYAEAVLQSGACMVIVTDEDVYEQIEGNK 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                 ++V +    L    +   G++    +A+TG+ GK++    + ++ +        
Sbjct: 81  ------VLVADALYALKDLGAYNLGRYKGRKIALTGSVGKTTTKELISEVLRTRKRVYTA 134

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS-QGVTHVSVEASSHGLDQHRLDGIKLI 205
            G  +                + +A   + +      +   +  +S G  +     IK  
Sbjct: 135 YGNFNNE--------------LGVAICAANMKMGTSYSVFEMGTNSAGEIEALSKYIKPD 180

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +G  HI   +  +     K+ +   +  +    ++Y  D+  + V         
Sbjct: 181 ICVVTGIGHAHIGRFEGIEGLAKEKLSIVSGMQKRG---VLYIADSCRRFVTSEVLEKTD 237

Query: 266 RVLSVGYQGKFIHLKKV-CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                      I L  V   +      T       + F         V N+L A  + +A
Sbjct: 238 VRYFGTDMASHIILGDVNRTVDGDFYFTAVTRNTPYCFKLNHFYSHFVNNSLPAIAIGMA 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    V++ + K     GR   +        I   Y     S+   + N+  I   + 
Sbjct: 298 AGLSYTDVMKGIRKFQPKDGR-GRIKEVDGIKVIDDTYNAGFESVISAMTNLAGIPVEKK 356

Query: 385 IVVFGCGGD----RDQGKRPIMGKIAL-DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
               G  G+     +     +M K +     +   V  +  R E    I           
Sbjct: 357 TAFIGEMGEIEGYEEMLYFKLMKKASELTNVEFVFVGKNFARFERTGNI----------- 405

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                R EA++  I  ++   VL  A +G
Sbjct: 406 KVVQTREEAMQL-ISKVSCGTVLFKASRG 433


>gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
 gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
          Length = 434

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 88/440 (20%), Positives = 158/440 (35%), Gaps = 47/440 (10%)

Query: 30  INEVSSDSRH-IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           ++++  DSR     G +FV I G K+DGH FIP AI  GA  I      S          
Sbjct: 12  VDKIILDSREDCTKG-LFVPIKGEKQDGHRFIPMAIEHGASFIFTEEDCSELSKE---YP 67

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               + V++T   L          +   ++ VTG+ GK++  + + +            G
Sbjct: 68  EVRFISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALSVEKSVFETKG 127

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG- 207
             ++              PI L           ++ + +  S  G + HR+  I      
Sbjct: 128 NANSQ----------LGLPITLFSMAKENK--EISVIELGISIPG-EMHRIGEIASCDIA 174

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            FTN+G  H++  +T++     K              +       S  + K+    G   
Sbjct: 175 VFTNIGSAHLENLKTKENTCFEK-----------MHILEGNQKEVSLYLPKKDAILGTLT 223

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                   F+  KK+     +++  I            +PGE    NA VA  + +++G+
Sbjct: 224 EEKIRAMGFLGEKKLNLFFYEKKEEI---------PLSVPGEHMEDNASVAMAIGLSLGL 274

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIV 386
               +L+ L +   + GR   + T      I   Y  + +S++  LK +     + R I 
Sbjct: 275 HKQKLLQGLLEFQGLKGRGGRLSTEDGIMIIDDSYNASPDSMKASLKVLASEKGAKRKIA 334

Query: 387 VFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           V G     GD +      +G++   L   A+ T      +  E+IR  +   +       
Sbjct: 335 VLGDMNELGDNEIAYHREIGELLKSLPIDALFTL----GKKGEEIRKAMGEKLLPGKACF 390

Query: 444 NRIEAIRTAIEMLNKQDVLV 463
           N  E   +  E +   D+L+
Sbjct: 391 NLEELSLSLEEEIKPGDLLL 410


>gi|74316133|ref|YP_313873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055628|gb|AAZ96068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 464

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 144/414 (34%), Gaps = 36/414 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L +            +   P+   + ++  V++DSR ++ G +FVA+ G + DG  F 
Sbjct: 8   MRLSE---------AAAMLGVPLPGADAEVVRVTTDSRTLRPGDLFVALRGERFDGGAFA 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ QGA  +V+  A +     A        L VD+TR  L   A     +    ++A+
Sbjct: 59  AQALQQGAAGVVLDRAQAPDLAQA--------LRVDDTRLALGRLAQAWRQRFAIPLVAI 110

Query: 121 TGTSGKSSVASFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG++GK++V   +  I +  +G ++  +     +++                  L     
Sbjct: 111 TGSNGKTTVKEMLAAILRVEAGDAAAVLHTEGNLNNDIGVPL----------MLLRLRDH 160

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  +  G   +     +       N    HI +  + +    A        L 
Sbjct: 161 HQYAVLEMGMNHAGEIDYLTRLARPDIAIVNNALTAHIGFLGSVENIARA-KGEIFNGLT 219

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
               A+  ADD ++    +            G            A      +T+++    
Sbjct: 220 DAGIAVFNADDPHAGLWREANRQRCVV--DFGLVHATSVRGDYRADEFGSALTVTLPNAT 277

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D    +PGE  V NAL A     A+ +    V+  L     V GR +          I 
Sbjct: 278 LDIALQVPGEHNVMNALAAVAGAFALDVSHRSVVAGLAGFGGVKGRLQRKAALHGSTVID 337

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA 410
             Y    +S++  L  +     G+ I V G     GD        +G +A   A
Sbjct: 338 DTYNANPDSVKAAL-AVLAQQPGKKIFVLGDMGELGDDAASMHEEIG-VAARAA 389


>gi|149910623|ref|ZP_01899261.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
 gi|149806351|gb|EDM66326.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
          Length = 478

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 131/414 (31%), Gaps = 30/414 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I      +  QL+    Q  +  I  VS+D+R I+AG +F+A+ G+  D + F+     
Sbjct: 1   MISLALSAIAAQLN-SKWQGDDVVITAVSTDTRTIKAGDLFIALSGDNFDANRFVAT--- 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
                            +     + P ++V ++R  L L    +       + A+TG++G
Sbjct: 57  ------AAEEGAIAAIVTKKQAVDIPQIIVKDSRIALGLLGKMVREHVAPKVAALTGSNG 110

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I +    +    G  +               P+ L         Q     
Sbjct: 111 KTTTKEMLAAILKLVAPTLATAGNFN----------NDIGVPLTL-----LRLQQQHQFA 155

Query: 186 SVEASSHG-LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +E  ++   +     G+ L      N                 +        + ++  A
Sbjct: 156 VMELGANHKKEIAYTTGLVLPDVVLINNVDAAHLEGFGDLQGVASAKSEILSGVKQQGIA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVEGKDFDFL 303
           ++  DD +    +++         SV           +   +       +     D    
Sbjct: 216 VLNRDDKFYPYWLRKVDAQRQVSFSVVDDNADYFAADIEFDNAGNPTFKLCTSNGDCTIN 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V NAL AA +    GID + +   LE +  V GR +      R   I   Y 
Sbjct: 276 LAVAGRHNVANALAAAAIASCFGIDISTIKRGLESMVNVQGRLKISQLTPRIRIIDDSYN 335

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAI 414
               S++  +  +    S  ++V+   G  G         +G  A     D   
Sbjct: 336 ANIASVKAAINVLTHFPSTNVLVMGDMGELGSSTADMHQQVGHYAQQQQVDHVY 389


>gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
 gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
          Length = 515

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 141/442 (31%), Gaps = 32/442 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R I  G  F+A+VG   DG+ F+ QA+A G    +          S        
Sbjct: 71  SICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAAGCAGAI--------GRSMPTDWPVG 122

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + V ++   L   A     ++  +++ +TG+ GK++  + V    +  G      G  +
Sbjct: 123 FVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTKAMVALALESLGHIHQTQGSEN 182

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L    S+  +  +  + +      L+  R+   K       N
Sbjct: 183 NH----------IGVPLTLLALPSFSPACVIE-MGMNHLGEILELSRI--CKPSVRVVLN 229

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +    AK  LF +   +    I+ ADD     +               
Sbjct: 230 VGPAHMENLGSLEQVALAKGELFRDS-GRGDVCILNADDPLVMAMPVSPDAMIRFFGRSE 288

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                +   +V +     + T+  +            PG     NA  AA +  ++G+  
Sbjct: 289 VSDLRLLNGEVTSGGQGVKFTLQQQGVPGFETTFLSCPGIHLASNACAAACVATSLGVPL 348

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM--ILKNIRTITSGRIIVV 387
               E + K   V  R      +S    I   Y     S+ +   +         +++ +
Sbjct: 349 KAASESISKFSPVGMRSRLEAISSNIQLINDAYNANPMSMTVALEILASVECKGRKVVAL 408

Query: 388 FGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                  D  +   M  I       + ++    P   D        +        + +  
Sbjct: 409 GDMLELGDFARGAHMKAIKCCQEVHVDVIGTAGPAFSDALNGLE--LEKCEVVKCENSAA 466

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
            A       +   DV++V  KG
Sbjct: 467 LA-EELTARVTPGDVVLV--KG 485


>gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
 gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
          Length = 560

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/530 (15%), Positives = 164/530 (30%), Gaps = 77/530 (14%)

Query: 1   MKLQDLIYKDFPELI------NQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE 54
           M L ++      ELI               +    I  V +D+R ++  ++F+  VG K 
Sbjct: 12  MTLANIAAACGGELIFPAEEPYANGRVKADYERLTIAGVVTDNRQVERDFLFIPFVGEKV 71

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           D H FIPQA  QGA   +     +            P + V+++++ L   A+    +  
Sbjct: 72  DAHRFIPQAFEQGAACSLSEEDLTDPVG--------PCIRVESSQRALMDIAAYYRRQLK 123

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-------------------SS 155
             ++ + G+ GK+S    V  +  R        G  +                       
Sbjct: 124 LPLVGIIGSVGKTSTKEMVASVLSRHYSVLKTEGNFNNEIGMPMTVLKIRDHHQVAVVEM 183

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
              +    +         +  +++ G  H+    +  G+   + +    +A   + +   
Sbjct: 184 GIDNFGQMSALAAVARPNIVVITNIGEAHLEFMKTRDGILASKTEVFDYLADGASVILNG 243

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
             D+    +    A++  +   +   + A     D  ++   + A +        G    
Sbjct: 244 DDDHLNCIRRAGGARIIFYGLGVDSSAAAREKDKDKLARLNGQIAEHLAKAKDRDGLADG 303

Query: 276 FIHLKKVCAIHNK------------------QQVTISVEGKDFDFLFPLPGEFQVYNALV 317
              +        +                     +      DF+ + P+PGE  VYNAL 
Sbjct: 304 CFDMSAAYTDQERLARETYRAENLSALGMEGMSASFITPEGDFEAVIPIPGEHNVYNALA 363

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-LEMILKNI 376
           AA +  ++G+D   +   +E    + GR         GG   +D  + +N         +
Sbjct: 364 AAAVGQSLGLDLDEIKAGMETASTISGR---AHFLHLGGLTLIDDCYNANPSSMRASLAV 420

Query: 377 RTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIV-----------TDDNP- 420
                GR I V G     G+        +G+  A +  D+                D   
Sbjct: 421 LARAKGRRIAVLGDMGELGENAPAMHYELGERAAEEGIDMLYAAGALGREIARGASDASL 480

Query: 421 -RSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            R E+      E                 +R   +   +  L + D ++V
Sbjct: 481 NRREEGAFFAEEGGGAHRREKPMEIYACPDRDALLADLLGRLKEGDTVLV 530


>gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Australia 94]
 gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
          Length = 243

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+      F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 1   MNLKK-----FEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TG++GK++V   V+ I + +       G  ++ 
Sbjct: 108 TGSNGKTTVKDIVEGILRSTYRVHKTKGNFNSQ 140


>gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
 gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
          Length = 515

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 140/442 (31%), Gaps = 32/442 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R I  G  F+A+VG   DG+ F+ QA+A G    +          S        
Sbjct: 71  SICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAAGCAGAI--------GRSMPRDWPVG 122

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + V ++   L   A     ++  +++ +TG+ GK++  + V    +  G      G  +
Sbjct: 123 FVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTKAMVALALESLGHIHQTQGSEN 182

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L    S+  +  +  + +      L+  R+   K       N
Sbjct: 183 NH----------IGVPLTLLALPSFSPACVIE-MGMNHLGEILELSRI--CKPSVRVVLN 229

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +    AK  LF +   +    I+ ADD     +               
Sbjct: 230 VGPAHMENLGSLEQVALAKGELFRDS-GRGDVCILNADDPLVMAMPVSPDAMIRFFGRSE 288

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                +   +V +     + T+  +            PG     NA  AA +  ++G+  
Sbjct: 289 VSDLRLLNGEVTSGGQGVKFTLQQQGVPGSETTFLSCPGIHLASNACAAACVATSLGVPL 348

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM--ILKNIRTITSGRIIVV 387
               E + K   V  R       S    I   Y     S+ +   +         +++ +
Sbjct: 349 KAASESISKFSPVGMRSRLEAICSDIQLINDAYNANPMSMTVALEILASVECKGRKVVAL 408

Query: 388 FGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                  D  +   M  I       + ++    P   D        +        + +  
Sbjct: 409 GDMLELGDFTRGAHMKAIKCCQELHVDVIGTAGPAFSDALNGLE--LEKCEVVKCENSAA 466

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
            A       +   DV++V  KG
Sbjct: 467 LA-EELTARITPGDVVLV--KG 485


>gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 435

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 126/381 (33%), Gaps = 37/381 (9%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           K+N +  DSR+++ G +FV + GN+ DGH FI  A   GA   +      + +       
Sbjct: 19  KVNSIEFDSRNVKKGSLFVPLRGNR-DGHQFIKDAFQNGASGTLSERTLPIPEGKF---- 73

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              ++ V NT +   L      G      +A+TG+ GK++    +  +  +   +   + 
Sbjct: 74  ---LIEVKNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKELLTHVFSKFFKTYRNVK 130

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             + I                            +    +  +  G     ++ +K     
Sbjct: 131 SFNNILGLTYTLSNLPLD-------------TELYIQELGTNRQGEIPELVEIVKPEISV 177

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T + + H    +        K+ + E  +    P             ++    +  +  
Sbjct: 178 VTAVEKAHTAGFKDISDIVKEKLSITEGAILSIVP-------------IQFKEFSKSKET 224

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +   I L  V    NK +  I   G+   F  P+PG   V + L+A GL     ++
Sbjct: 225 ITFGREGDIKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGLAEVFKVN 284

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V E +        R      N     I   Y     S+E  +K +      ++ ++ 
Sbjct: 285 IEKVSELIRTFTPPEMRLTVEQLNKV-ILIDDSYNANPKSMENAIKVLSLQELPKVAIIG 343

Query: 389 GC--GGDRDQGKRPIMGKIAL 407
                G+  + +   +G++  
Sbjct: 344 EMLELGEESKKEHEKIGELLN 364


>gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC
           334]
 gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei ATCC 334]
          Length = 462

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/419 (16%), Positives = 139/419 (33%), Gaps = 46/419 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+   +    +  ++ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKM------TLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKFLSLFASRL-YG 111
           FIP            ++A +    +     + P+      LVV +  K +   A      
Sbjct: 54  FIP------------AAATAGAVATFVAADHLPVTTKLITLVVPDPLKAMQQLAQYYLLM 101

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++A+TG++GK++       I            P +  +       + +  P    
Sbjct: 102 KVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT-- 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                     V  + +     G   H L  +     +   +  +        +       
Sbjct: 158 ---------EVLVLEMGMDRPG-QLHALSTLAEPDVAVITMIGEAHIEFFKTRDKIADAK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
               + L  +   I   D+   +E  K+      R     +    I    +    N  + 
Sbjct: 208 MEITDGLKDDGTFIFNGDEPLLQERAKKITQE--RETFGLHPENTIFAHSISGHRNHTEF 265

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+     D  F  P+ GE+ V NAL A  +     +   ++ + L    V   R +++  
Sbjct: 266 TVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHVKPEIMQKALAHFQVTANRTQWLIG 324

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +     +   Y     +++ ++ +    T +GR I V G   +  +    +   +A  L
Sbjct: 325 DVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHIAVLGDMLELGEQSPALHAGLAEAL 383


>gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
 gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
          Length = 470

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 139/367 (37%), Gaps = 17/367 (4%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           + + V +D+R +  G +FVA+ G + DGH F+  A     +A   ++       +    +
Sbjct: 23  RFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAA----KAGAAAAMVDAAWSAGKADA 78

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+LVVD+TR+ L   A+    +    ++ VTG++GK++V      I +          
Sbjct: 79  GLPLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVKEMCAAILRVQASRDGFGE 138

Query: 149 PTSTISSFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASS-HGLDQHRLDGIKLIA 206
            +   +    +N +  P   + L         +   +   E      L Q  +       
Sbjct: 139 ESVLATRGNLNNDIGMPLTLLELRDFHRAAVIEMGMNHPGEIGYLSALAQPTV------- 191

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N  R H+    +       K  ++E  L     A+I ADD ++     R+ NAG  
Sbjct: 192 ALVNNAQRAHLQGMGSVDEVAREKGAIYEG-LGGAGVAVINADDPHAGYW--RSLNAGRP 248

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +++ G         +        ++ + +     DF   +PG   V NAL AA  C+A G
Sbjct: 249 IVTFGIDHPADVSARCTLRGLGSRLELDIPQGKIDFALQVPGLHNVRNALGAAAACLAAG 308

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +    V E L       GR +          +   Y    +S+ + +  +  +  G   +
Sbjct: 309 VPLEAVAEGLAGFAGTRGRLQRRSGPRGALILDDSYNANPDSVRVGIDVLAAM-PGHTWL 367

Query: 387 VFGCGGD 393
           V G  G+
Sbjct: 368 VLGDMGE 374


>gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W]
 gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II]
          Length = 462

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 68/419 (16%), Positives = 139/419 (33%), Gaps = 46/419 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MK+         E+   +   P+   +    +  ++ DSR ++ G +FV + G + DGH 
Sbjct: 1   MKM------TLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHE 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKFLSLFASRL-YG 111
           FIP            ++A +    +     + P+      LVV +  K +   A      
Sbjct: 54  FIP------------AAATAGAVATFVAADHLPVTTKLITLVVPDPLKAMQQLAQYYLLM 101

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++A+TG++GK++       I            P +  +       + +  P    
Sbjct: 102 KVNPKVVAITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT-- 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                     V  + +     G   H L  +     +   +  +        +       
Sbjct: 158 ---------EVLVLEMGMDRPG-QLHALSTLAEPDVAVITMIGEAHIEFFKTRDKIADAK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
               + L  +   I   D+   +E  K+      R     +    I    +    N  + 
Sbjct: 208 MEITDGLKDDGTFIFNGDEPLLQERAKKITQE--RETFGLHPENTIFAHSISGHRNHTEF 265

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+     D  F  P+ GE+ V NAL A  +     +   ++ + L    V   R +++  
Sbjct: 266 TVEA-WPDLTFSIPIMGEYNVVNALAALLVGRKFHVKPEIMQKALAHFQVTANRTQWLIG 324

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           +     +   Y     +++ ++ +    T +GR I V G   +  +    +   +A  L
Sbjct: 325 DVGEQILSDVYNANPTAMKAVIHDFSEFTATGRHIAVLGDMLELGEQSPALHAGLAEAL 383


>gi|298346704|ref|YP_003719391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|298236765|gb|ADI67897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
          Length = 480

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 154/477 (32%), Gaps = 41/477 (8%)

Query: 13  ELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           + + +           +I     +DSR +  G +FVA+ G   DGH F+     +G +  
Sbjct: 4   DALREAIGLEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARRGGKVA 63

Query: 72  VVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN----------I 117
           +VS       +    +A       +L V + +  L   A     +              +
Sbjct: 64  IVSHDRTEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTGKLKLV 123

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++     +Q+    G +   +   +          LT              
Sbjct: 124 IGITGSAGKTTTKDLTKQLLSTKGATVAPVASFN----NEVGLPLTVLEA---------D 170

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S     + + AS  G D   L  I  +  +   +         +      A+     E 
Sbjct: 171 VSTEYLVLEMGASQPG-DIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILEN 229

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH-NKQQVTISVE 296
           L     AI+ ADD   + +  R   +G  +     +   + +  +      +    +   
Sbjct: 230 LGPSGMAILNADDPRVEAMSGR--TSGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTP 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRG 355
                    L G   V NA+ AA +    G+  A +   L     V   R   V      
Sbjct: 288 EGSAPVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGV 347

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLAD 411
             I   Y    +S+   L  I    + R +V+        G+        +G+ A +L  
Sbjct: 348 DLIDDAYNANPDSVRAALDVIAKSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGI 407

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             ++T   P ++  E   + +        +  +   A R   E++   D+++V  KG
Sbjct: 408 SVLLTV-GPMAKHIESAYSALKRDGES-HQVMDATAAGRLLQEIVRPGDLILV--KG 460


>gi|298386757|ref|ZP_06996312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
 gi|298260431|gb|EFI03300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
          Length = 432

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 158/436 (36%), Gaps = 32/436 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  +A+  G    V+       +    I  +   
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVID------ESEYAIEGDQRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  +S    + +G    
Sbjct: 70  ILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNL-- 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +N +  PS +     L   +   +  + + A+  G  +   + ++   G  TN+
Sbjct: 128 ------NNHIGVPSTL-----LRLKAEHDLAVIEMGANHPGEIKFLSEIVEPDCGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ L  KE   +    D  +  +M  A            
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHD--NAYLMNIAEGLNLIPYGTED 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                      + +   +     +GK +     L GE+   NAL A  +    G++ A +
Sbjct: 235 DLYVNGRITGNSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E L        R +   T+     I   Y     S+   L+N R +     +++ G   
Sbjct: 295 NEALAGYTPQNNRSQLKKTD-DNTLIIDAYNANPTSMMAALQNFRNMEVPHKMLILGDMR 353

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +          KIA  L + A         E    +  +       F    N  E I+  
Sbjct: 354 ELGAESAAEHQKIADYLKECA--------FEKVWLVGDQFAAAEHSFQTYPNVQEVIKEL 405

Query: 453 IEMLNKQDVLVVAGKG 468
                K   +++  KG
Sbjct: 406 EADKPKGYTILI--KG 419


>gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
 gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
          Length = 453

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 142/395 (35%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  VS+D+R I    +FVA+VG + D H F  QA+A GA+A++V  A  +     
Sbjct: 19  GDDTDIAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERALDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P LVV NT+  L    S ++ +     +A+TG+ GK++V   V  I    G   
Sbjct: 74  ----NVPQLVVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +           +TP                   + + A+  G   + +  +K 
Sbjct: 130 FTAGNFNNDIGVPLTLLRSTP-------------QDDYAVIELGANHIGEIAYTVGLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L     A++  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLSAGYTAVVNLDSQGGALWQSVLADKS 235

Query: 265 CRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  SV       + + +      +    +     D      + G+  V NAL A+ L I
Sbjct: 236 VKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAASALAI 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  +   ++ R
Sbjct: 296 EMGATLADIQHGLAHLSKVKGRVDVTELTDHITLIDDSYNASVPAMKAAVDLLGGFSATR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      G+        +G+ A       ++T
Sbjct: 356 WLILGNMAELGEESLALHQQVGEHAAPFQFDYVLT 390


>gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
 gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
          Length = 470

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/459 (16%), Positives = 149/459 (32%), Gaps = 35/459 (7%)

Query: 13  ELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           E I  ++   +   + +I   V +DSR   AG ++VA VG   DGH F+P          
Sbjct: 7   EEIATVTGGRLVGPDARITGPVVTDSRECAAGSLYVARVGEHADGHDFVPA--------- 57

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVA 130
              +  +              +VVD+     +  A  +  + P   I+ +TG+SGK+S  
Sbjct: 58  -ALAVGAAGVLGERAVDGASCVVVDDVELAFAEVARAVVDRAPNLQIVGITGSSGKTSTK 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +  R   +    G  ++              P+ +        +       + AS
Sbjct: 117 DLLGAVLARFAPTIAPYGSLNSE----------VGVPLTV---CRIDEATRYLVAEMGAS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G   +         G   N+G+ H+    + +A   A+ +        +    I   D
Sbjct: 164 GVGHIAYLTKIAPPSIGIVLNVGQAHMGEFGSVEAI--ARTKGELVEALPQDGVAILNVD 221

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 M     A   ++ +G    +           + +  ++    + D    L GE 
Sbjct: 222 DSRVRAMASRTQAKVILVGLGEDADYRATDVSIDEAGRPRYHLTCPLGEADVRLALVGEH 281

Query: 311 QVYNALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           QV N+L       ++G+    +V            R E          +   Y    +S+
Sbjct: 282 QVGNSLSVIAAATSLGLALGDVVEAVAGAGAASRWRMEVSEVGGGVTLVNDAYNANPDSM 341

Query: 370 EMILKNIRTITSGRIIVV----FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSED 424
              L+ +  + + R  +         G+    +   +G++A +L  D  +V     ++  
Sbjct: 342 RAALRALAHMGTSRRSIAALGEMRELGEASHDEHTAVGQLAAELGIDRLVVVGAGAQAIA 401

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                A +           +   A    +E +   DV++
Sbjct: 402 QGARTAGMTA--DAVTTVDDIDAAHDVLVEQIAPGDVVL 438


>gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 609

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 148/414 (35%), Gaps = 43/414 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L +F    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 172 NLKDFSEVLKREKLNEL-LFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVK 226

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +         T  ++  I+ V +T   +   A++   K    ++ +T
Sbjct: 227 DVLDKGASLVIADN---------TDIADERIVKVADTIATMQDLATKYRNKLDIQVIGIT 277

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +  +   +    G  +            T               + 
Sbjct: 278 GSNGKTSTKDIVYSLLSKKAKTLKTEGNYNNHIGLPYTILNVTDE-------------EK 324

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + 
Sbjct: 325 FVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVNKEN 384

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +            +V K              +     ++         + T+  +    +
Sbjct: 385 TFVCGDDVYLAKLDVNKIGF----------NEDNNFRIESYEFSDKGSKFTLDGK----E 430

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G+  + N  +A  L   IG+    + E L+ + +   RF+ +        I   
Sbjct: 431 YEMSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMRFQEIRVG-EDIYINDA 489

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y  +  S++  +  +  I   +  I + G   +  + +     ++   L D  I
Sbjct: 490 YNASPTSMKAAIDTLNEIYDDKYKIAILGDMLELGEDEVKYHVEVLNYLLDKKI 543


>gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 458

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 131/394 (33%), Gaps = 26/394 (6%)

Query: 23  MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           ++  + + +  +  DSR I+ G +FVA+ G   DGH FI  A ++GA   +VSS++   +
Sbjct: 21  LKGDDGEFSGLIRVDSRKIEEGDLFVALSGKNMDGHDFILDAFSRGAHCALVSSSWG--E 78

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               +     ++ V +  + L   A        +N++AVTG+ GK+S    +        
Sbjct: 79  KIRDLPEGIRVIEVADPEQGLIKIARHRLKGL-KNVIAVTGSVGKTSTREMIFLA----- 132

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G +S +      +       + +A+         V  + +  +  G     +D 
Sbjct: 133 ----LGGSSSGVYRARSSHNTRIGCALTVAEM---PEDTSVLILEMGTNHPGEISEMVDL 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             +     T +   H++   + +   +AK+ + E   P     I   D+      +K   
Sbjct: 186 YPVDTAVITEIAPAHLEGLGSLEGVLDAKLEILES--PNLRKVIFNGDNPMLSSAVKERS 243

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQ---QVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                            L+ +     ++    + I  +     +            +L+ 
Sbjct: 244 FGKNWQALSVGSSGSYVLEDIRLEWQERPVLSMIIGEKQGRSSYGIKAKLTGIHNASLLG 303

Query: 319 AGLCIAIG--IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM--ILK 374
                A+   I        L  +    GR   +        +   Y     S+E    L 
Sbjct: 304 IAWATAVELGISPEEASIRLSSIKPYHGR-GVLKDRGGILVLDESYNANPKSMEALLDLV 362

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                   + +++ G  G+  +G   +  +I   
Sbjct: 363 AQSPFPREKRLLILGEMGELGEGSLSLHEEILKK 396


>gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. A1055]
 gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Kruger B]
          Length = 243

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+      F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 1   MNLKK-----FEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TG++GK++V   ++ I + +       G  ++ 
Sbjct: 108 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ 140


>gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 459

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 153/449 (34%), Gaps = 34/449 (7%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  ++ V+ DSR +  G +F+A+ G   DGH FI +AIA GA  IV  +A         
Sbjct: 21  ADFTVSGVAFDSREVTRGDLFIAMKGENADGHSFIDKAIAAGAAGIVCETAI-------- 72

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              + P + V ++   L+   +    +    I+ VTG++GK+     +     R      
Sbjct: 73  ---DHPHVRVADSAAALNALGTASRARSHGRIIGVTGSAGKTGTKEALFAALDRFR---- 125

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                       +        P+ LA+  S   +       +  +  G        ++  
Sbjct: 126 ----PGKAHRSVKSYNNHVGVPLSLARMPS---TADFGIFEMGMNHAGELAALTRIVRPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H+++  +++A  +AK  +FE  L     AII  D  +   +  +A     
Sbjct: 179 VAIVTTIAPAHMEFFGSEEAIADAKGEIFEG-LEPGGTAIIPFDSPHYARLRAKAEQHAA 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCI 323
            ++S G                K    ++ + +D    F     G   V N+L       
Sbjct: 238 HIVSFGLAEGADVRAVDWLPDGKGGSLVTAQVQDALLCFTIAQAGAHWVANSLAVLAAVK 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTIT 380
           A+G D         ++  + GR         GG I V    Y     S+   +  +   +
Sbjct: 298 AVGGDLPAAGLAFAEMPGLTGRGARHRIAVPGGHILVIDESYNANPASMAATIGQLAGES 357

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           + R + + G   +   G       +A  L A            E+   +    + G   F
Sbjct: 358 ADRKVAILGAMKELGPGGEAYHAGLAAPLVAAGVQFAL--LVGEEMAPLAKA-LEGRIDF 414

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +A      ++   D ++V  KG
Sbjct: 415 AHVPAHPDATARLGGLIRPGDAVLV--KG 441


>gi|294791082|ref|ZP_06756240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
 gi|294458979|gb|EFG27332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
          Length = 524

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 84/490 (17%), Positives = 154/490 (31%), Gaps = 74/490 (15%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            KI  V +DSR +  G +FVAI G + DGH ++ QA   GA A +V              
Sbjct: 35  TKITSVVTDSRQVSEGSLFVAIKGERVDGHDYVNQAARAGACAALVEHPVE--------G 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGK---------HPENILAVTGTSGKSSVASFVQQICQ 138
           +  P LVV +T   L   A     +             ++ +TG+ GK++    V+ + Q
Sbjct: 87  AVLPQLVVTDTIGSLGRLARYNISRRRQIALAEGKDFTVVGITGSVGKTTTKDLVKDLLQ 146

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +G +   +G          +N +  P       A+    +       + AS+ G   + 
Sbjct: 147 TAGTTIAPVGS--------FNNEIGLP-----LTAVKVDETTRYFVAEMGASAAGEIAYL 193

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +         +G  H+    +      A      + L  +  A++ A D   + +  
Sbjct: 194 TRLVPPDIAVELKVGAAHLGGFGSVDGIRQA-KSELVQALTSQGIAVLNAQDPNIRLMTG 252

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--------- 309
             H +     S G                        + +D         +         
Sbjct: 253 STHASTLVWFSDGRIDPQNLPGDSRKQIFIYATDTRQDQEDHPSFTLHLPDLPGIPVTLG 312

Query: 310 ----FQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFV----GTNSRGGRIYV 360
                 V NAL A  +   +G+    +   L     + P R                I  
Sbjct: 313 LSGVHNVMNALAAVSVAYCLGVRPQTIASVLFNHKAMSPHRMAVSLVTLTAGESFTLIDD 372

Query: 361 DYAHTSNSLEMILKN---IRTITSGR---IIVVFGCG---GDRDQGKRPIMGKIALDLAD 411
            +    +S++  L      ++  SG     I V G     G R++     +G  A   AD
Sbjct: 373 SFNANPDSMKAGLDALSGWKSAESGNEPVKIAVLGSMLELGPREEDLHHSLGAYAAQSAD 432

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIP-----------GFIEKGNRIEAIRTAIEMLN--K 458
              VT  +   +  + + + +  G                E+ +  +A     ++     
Sbjct: 433 YV-VTVGSETDDHLDTLASALCQGACQRAEQSPVRLLKAYEEHSAGQAATRVAQLARQNP 491

Query: 459 QDVLVVAGKG 468
             V+++  KG
Sbjct: 492 GSVVLL--KG 499


>gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
 gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
          Length = 536

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 78/487 (16%), Positives = 161/487 (33%), Gaps = 37/487 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + ++      E+      F     +   N V SDSR I+ G +FVAIVG   DGH ++
Sbjct: 30  MSISEIAKAVHGEI----HEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-----RLYGKHPE 115
             A   GA   +V              +N   +VV+N+ + L L A      R     P 
Sbjct: 86  KNAEKSGAVVAIVEHVVE--------GTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPF 137

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKAL 174
            I+ +TG+ GK++    ++ +    G +   +G   + I       ++ + +   +A+  
Sbjct: 138 TIIGITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMG 197

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +    +      +      +            GS   + +   +  +    +  A +   
Sbjct: 198 ANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSD 257

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVT 292
           ++ +   S  +      +    +K                  I L           ++  
Sbjct: 258 DKRVSAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSN 317

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGT 351
            S      +    + GE  V NAL AA +   +G+    +   L K+ H+ P R +    
Sbjct: 318 SSNLMNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTV 377

Query: 352 NSRGGRI---YVDYAHTSNSLEMILKNIRTITSGRI--------IVVFGCG---GDRDQG 397
           +    +       +    +S++  +  +    +           I V G     G  +  
Sbjct: 378 SKNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDE 437

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEM 455
               +G+   + +  A+V   +    D +K+   I  G       +  +  +A+      
Sbjct: 438 LHTNIGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHDAVYFVHSA 497

Query: 456 LNKQDVL 462
               D++
Sbjct: 498 DEADDIV 504


>gi|86134152|ref|ZP_01052734.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
 gi|85821015|gb|EAQ42162.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
          Length = 418

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 132/380 (34%), Gaps = 40/380 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++D+R+I+   IF A+ G+  +G+ F  +A+  GA   +V             ++   I
Sbjct: 16  VNTDTRNIRKNTIFFALKGDNFNGNSFAEEALKLGANYAIVDEEV--------YQTQDAI 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V N  + L   A+    +    I+ +TG++GK++    +  +  +   +    G  + 
Sbjct: 68  ILVPNVLETLQQLANYHRKQLKATIIGLTGSNGKTTTKELIFAVLSKKYKTIATKGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L    S      +  V + A+     +      +   G  TN 
Sbjct: 128 H----------IGVPLTLL---SMPIDTEMGIVEMGANHQKEIEFLSSICEPDFGYITNF 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++     +     K  L+  L      A I  DD    +  K              
Sbjct: 175 GKAHLEGFGGVEGVIKGKSELYHFLEQNNKIAFINPDDKIQVDKTK-------------N 221

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 L  +        V +S +  +      L G +   N  +A  +     +   ++
Sbjct: 222 ITTIPFLPSIALKEANPFVQLSYD--NLVINSNLIGTYNYTNIAIAITIGNYFKVKDDVI 279

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG- 391
            E +E       R + +  N     I   Y    +S+++ L+N   + +   IV+ G   
Sbjct: 280 KEAIEGYESTNNRSQIINQN-SNVIILDAYNANPSSMKVALENFHALKADHKIVILGDMF 338

Query: 392 --GDRDQGKRPIMGKIALDL 409
             GD    +   +  +A  +
Sbjct: 339 ELGDARLEEHQQIVNMATQM 358


>gi|325202773|gb|ADY98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240149]
          Length = 436

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 130/401 (32%), Gaps = 34/401 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + ++ + +DSR I+AG +F A+ G + D H F+                 +        R
Sbjct: 6   KPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSR 53

Query: 88  SNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +       L VD+T   L   A          +  +TG+ GK++V   +  + +R    
Sbjct: 54  EDCVAMDGALKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGD 113

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +  +      ++           P+ L              + +  +  G         K
Sbjct: 114 NAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAK 163

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A    N  R H+                  + L  +  A+I  +DA          N 
Sbjct: 164 PDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNL 223

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L +
Sbjct: 224 NTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALSL 281

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G+    V E L+    + GR            I   Y    +S++  +  +  + + R
Sbjct: 282 AAGLSLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAPR 341

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
            I V G  G+  + +   M       A     + A    DN
Sbjct: 342 -IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 381


>gi|297184170|gb|ADI20289.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 424

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 116/374 (31%), Gaps = 33/374 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R I  G +F A+ G   +G+ F  QA+  GA   VV               +  
Sbjct: 12  SICTDTRSIVPGSVFFALKGVSFNGNTFALQALEAGAAFAVVDENVG---------DDER 62

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++ V +    +   A           + +TG++GK++       + +         G   
Sbjct: 63  LIKVSDVLTAMQGCALDYRRHLNIPTIGLTGSNGKTTTKELFLAVLKTKYKVHATKGN-- 120

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFT 210
                  +N +  P  I     LS      +  V + A+ H  +  +L  I +   G  T
Sbjct: 121 ------FNNHIGVPLTI-----LSAPKETEMLIVEMGAN-HQKEIGQLASIAEPTLGYIT 168

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L++ +   E    +   D   +     A        + 
Sbjct: 169 NYGKAHLEGFGGVEGIIKGKSELYDYIAQNEEGVALVNADDAIQLEKSAACRRTTFGKTN 228

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                      V        +  S+    +     L G F   N   A  L     + + 
Sbjct: 229 AQFTYT-----VEEKDEFAGIQFSIATASYTIQSNLSGSFNCTNLAAAVALGRYCDVPAP 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--- 387
            +++ L        R E          +   Y     S+ + ++N         +V+   
Sbjct: 284 AIVQALTDYLPAMNRVE-WRKTPSNQVLLDAYNANPTSMSLSIENFAKWHKDGWLVLGDM 342

Query: 388 FGCGGDRDQGKRPI 401
           F  G +     R I
Sbjct: 343 FELGEESAAEHRAI 356


>gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J1-208]
          Length = 418

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 126/336 (37%), Gaps = 24/336 (7%)

Query: 44  WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
            +FV  VGN  DGH F+ QA   GA A                 ++ P+++V++T   L 
Sbjct: 1   DLFVPFVGNVRDGHEFVNQAREMGAVATFWQKDVPNP------PTDFPVILVEDTLLALQ 54

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A++   +    ++A+TG++GK++    +  I + +    +  G  +          LT
Sbjct: 55  ELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNH-IGLPYTILT 113

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P    +A     ++ +    V  + +   +               TN+G  HI+Y  ++
Sbjct: 114 MPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIA------------IITNIGEAHIEYLGSR 161

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +    AK+ +   L P            + + ++    N   R L+ G            
Sbjct: 162 EEIAKAKLEITAGLNPSGILIY-----PHEETLLLGNINGDFRQLTFGKSEAAEIYPLEI 216

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               +    I+    + +   P+ GE  V+N + A      IGI+   +   L+ +    
Sbjct: 217 RAEAEGTCFITNWEPELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSK 276

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            R E++ T S    +   Y  +  +L+ +LK    +
Sbjct: 277 SRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHM 312


>gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 252

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 13/153 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+      F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 10  MNLKK-----FEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TG++GK++V   V+ I + +       G  ++ 
Sbjct: 117 TGSNGKTTVKDIVEGILRSTYRVHKTKGNFNSQ 149


>gi|225864166|ref|YP_002749544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
 gi|225786057|gb|ACO26274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
          Length = 255

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 20/199 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGGGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVAS-------FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           TG++GK++V          +    +                +  +  R T    + +  +
Sbjct: 117 TGSNGKTTVKDIKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMS 176

Query: 174 LSYLSSQGVTHVSVEASSH 192
                       +    + 
Sbjct: 177 EKGCRIIERFTWNSFRGNC 195


>gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
 gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
          Length = 477

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 158/446 (35%), Gaps = 38/446 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSR   AG +F+A+ G++ DGHL+IP AI++GA  +++  +   +  +   R+ 
Sbjct: 35  IRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRTG 94

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           T  LV       L   A+           + +TG+ GK++    +  I  +   +    G
Sbjct: 95  TWALVAKEPLHALYRMATEYVSLLNGVTTIGITGSCGKTTTKEMLASILSQEFPTVKTPG 154

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             ++          T   P+ L +              +     G     L  +      
Sbjct: 155 NYNS----------TLGLPLSLMQIGD---HHKYGVFEMGIDHIGEMDTMLGMLAPNHAV 201

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+G  H +   +     +A M    +LL           D  S++ M+          
Sbjct: 202 LTNIGISHAEKLGS----ISAIMTEKGKLLKNARNGYFMGMDEPSRKAMEHIAGHPQGFW 257

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            +        ++    +            +  +   P  G+  + +AL A  +   +G+ 
Sbjct: 258 GIHATEGVTGIRDEGLLGWTII------YQGTEIHVPAIGKHSLKDALAAISVARHLGVG 311

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV- 387
              +   LEK+  + GR   V  +      Y + A +S +  +      +    + +V+ 
Sbjct: 312 EEFIKHGLEKVENLEGRSRVVSGDVTVIEDYYNAAASSTTSILDFMAATSWKGDKKVVLG 371

Query: 388 -FGCGGDRDQGKRPIMGK---IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
                G        ++G+   +A   +     TD    ++    I      G  G +   
Sbjct: 372 DMKELGRYSDRAHEMIGRRLLLASPSSVFLYGTD----TKKTWNILR--SGGYAGQLVYS 425

Query: 444 NRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +    +  A+E  +++ D+++V  KG
Sbjct: 426 DDEHEVNRALERNIHRGDLVLV--KG 449


>gi|325105557|ref|YP_004275211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
 gi|324974405|gb|ADY53389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
          Length = 431

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 133/382 (34%), Gaps = 29/382 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS+D+R +    +F A+ G   D + F  QAIA GA   +V            +  +  
Sbjct: 15  SVSTDTRKVTESCLFFALKGENFDANTFAEQAIALGAAFAIVDK--------QDLPKHPQ 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + VD+  K L   A     +    ++ +TGT+GK++    +  +  +   ++  +G  +
Sbjct: 67  FIFVDDVLKTLQDLAHYHRRQLGLPVIGLTGTNGKTTTKELINAVLSQKFKTAATLGNLN 126

Query: 152 TISSFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                       TP   + + +  +    +     ++    +GL               T
Sbjct: 127 NHIGVPLTLLAITPDTEVAIVEMGANHQKEIELLCAIAVPDYGL--------------IT 172

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++     +     K  L++ L        I  D+ + +E+ +            
Sbjct: 173 NVGKAHLEGFGGFEGVKKGKGELYDFLSKNGGTVFINRDNLHLQEMARSRSFKEVI--YY 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G         K+ A      V  S      +    L G +   N L A  +   +G+ + 
Sbjct: 231 GTSSDNYVFGKLIANDPYLTVEWSDGENKDEVQSQLTGIYNFENILAAIAIGKKLGLTTQ 290

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            + E +        R + + T          Y    +S+ + ++NI  + +   +++ G 
Sbjct: 291 QIHEGINSYKPQNNRSQIIKTERNTVIGDF-YNANPSSMAVAIENIARLEADNKVLILGD 349

Query: 391 G---GDRDQGKRPIMGKIALDL 409
               G+    +   + + A  L
Sbjct: 350 MFELGEESGAEHRAVIEKAEKL 371


>gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
 gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
          Length = 536

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 79/492 (16%), Positives = 160/492 (32%), Gaps = 39/492 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + ++      E    +  F     +   N V SDSR I+ G +FVAIVG   DGH ++
Sbjct: 30  MNISEIANTVHGE----MHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-----RLYGKHPE 115
             A   GA   +V              +N   +VV+N+ + L L A      R     P 
Sbjct: 86  KNAEKSGAVVAIVEHVVE--------GTNLNQIVVNNSVEALGLLAKHNLELRRNLNKPF 137

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKAL 174
            I+ +TG+ GK++    ++ +      +   +G   + I       ++ + +   +A+  
Sbjct: 138 TIIGITGSVGKTTTKDMLKALLSTLDETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMG 197

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +    +      +      +            GS   + +   +  +    +  A +   
Sbjct: 198 ANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSD 257

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++ +   S  +      +     K                  I L              +
Sbjct: 258 DKRVSAMSCLVENKHVRWFGRNAKNGLLESASKDDYQLSASNIKLDSFGKAVFTITERSN 317

Query: 295 VEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGT 351
                   +    + GE  V NAL AA +   +G+    +   L K+ H+ P R +    
Sbjct: 318 SSDLVNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTV 377

Query: 352 NSRGGRI---YVDYAHTSNSLEMILKNIRTITSGRI--------IVVFGCG---GDRDQG 397
           +    +       +    +S++  +  +    +           I V G     G  +  
Sbjct: 378 SKNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDE 437

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEM 455
               +G+   + +  A+V   +    D +K+   I  G       +  +  EA+      
Sbjct: 438 LHTNIGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHEAVYFVHSA 497

Query: 456 LNKQDVL--VVA 465
               D++  +VA
Sbjct: 498 DEADDIVWKLVA 509


>gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 7/128 (5%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ VS D+R +Q G +FVA+   + DGH F+  A+A+GA A +VS           +
Sbjct: 20  DWTVSGVSIDTRTLQPGDLFVALADVR-DGHDFVKDALAKGAGAAMVSR------IPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           R+  P+LVV++    L    +    +    ++A+TG+ GK+S    +  I  R       
Sbjct: 73  RTTDPLLVVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDRQARCHAA 132

Query: 147 IGPTSTIS 154
               +   
Sbjct: 133 EASYNNHW 140


>gi|149181751|ref|ZP_01860243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148850599|gb|EDL64757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 165

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 19/178 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKLQ L+      ++   S       +  I  + +  + +Q G +F  I G++ D H   
Sbjct: 2   MKLQTLLG-----VLPFYSTRGKGNPD--IANLKNHHKKVQNGDLFFCIKGSEVDSHTLA 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
            +A+  GA A+V      L         + P+++V ++R+ +++ A   Y +  +   ++
Sbjct: 55  KEAVLSGAAAVVSERELEL---------DVPVIIVKDSRRAMAVLADYFYKQPTKQLKLI 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALS 175
            VTGT+GK++    + +I   +G  +  IG            ++ TTP  + L +  +
Sbjct: 106 GVTGTNGKTTTTHLIDRIFSLNGDKTGLIGTLYVKTGDEVIASKNTTPDSLTLQQLSA 163


>gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
 gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
          Length = 536

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 77/487 (15%), Positives = 159/487 (32%), Gaps = 37/487 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + ++      E+      F     +   N V SDSR I+ G +FVAIVG   DGH ++
Sbjct: 30  MSISEIAKAVHGEI----HEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-----RLYGKHPE 115
             A   GA   +V              +N   +VV+N+ + L L A      R     P 
Sbjct: 86  KNAEKSGAVVAIVEHVVE--------GTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPF 137

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKAL 174
            I+ +TG+ GK++    ++ +    G +   +G   + I       ++ + +   +A+  
Sbjct: 138 TIIGITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMG 197

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +    +      +      +            GS   + +   +  +    +  A +   
Sbjct: 198 ANHVGEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSD 257

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++ +   S  +      +    +K                  I L              +
Sbjct: 258 DKRVSAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSN 317

Query: 295 VE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGT 351
                   +    + GE  V NAL AA +   +G+    +   L K+ H+ P R +    
Sbjct: 318 SSDLMNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTV 377

Query: 352 NSRGGRI---YVDYAHTSNSLEMILKNIRTITSGRI--------IVVFGCG---GDRDQG 397
           +    +       +    +S++  +  +    +           I V G     G  +  
Sbjct: 378 SKNDEKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDE 437

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEM 455
               +G+   + +  A+V   +    D +K+   I  G       +  +  +A+      
Sbjct: 438 LHTNIGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHDAVYFVHSA 497

Query: 456 LNKQDVL 462
               D++
Sbjct: 498 DEADDIV 504


>gi|332291225|ref|YP_004429834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169311|gb|AEE18566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 424

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 136/387 (35%), Gaps = 36/387 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N V +D+R +Q   I++++ G+  +G+ F  QA+  GA   V+       D++       
Sbjct: 14  NGVCTDTRSLQKNQIYISLKGDNFNGNKFAKQALKDGARLAVIDEKEYEDDYT------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+  K L   A+         I+ +TG++GK++    +  +     ++    G  
Sbjct: 67  --VLVDDVLKTLQQLANYHRNYLNLPIIGLTGSNGKTTTKELINAVLSEKYVTVATKGNL 124

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L    S   +  +  V + A+  G      +  +   G  T
Sbjct: 125 NNH----------IGVPLTLLSMDS---TTEIGIVEMGANHQGEIAMLCEIAQPNFGYIT 171

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N G+ H++     +     K  L+  L   E  A I   D      ++     G  + + 
Sbjct: 172 NFGKAHLEGFGGFEGVIKGKSELYNYLRDNEEMAFINDTDK-----LQVEKATGITLQTF 226

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G       +  V         ++ +  K+      L G +   N  VA  +     +   
Sbjct: 227 GSTESKYPISLVD-----GSESLKLSFKNTTINSQLIGIYNYSNIAVAIAMGTYFDVSID 281

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   +E+      R + +  +S    I   Y     S+   L+N++   +  I  +   
Sbjct: 282 QIKSGIEEYIPANNRSQIIKKDSY-RIILDAYNANPTSMAAALENLKATNTTTIAFIGNM 340

Query: 391 G--GDRDQGKRPIMGKIALDLA-DIAI 414
              G   + +   M  +A  L+ D   
Sbjct: 341 FEVGVTSKAEHQAMLDLAHHLSIDQVY 367


>gi|325128832|gb|EGC51691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis N1568]
          Length = 452

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 131/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR  +AG +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L + A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCVAMDGALKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R       +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGDDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R H+                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
 gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
          Length = 821

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/495 (15%), Positives = 168/495 (33%), Gaps = 50/495 (10%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                E+   L           I+ + +DSR +      +F A+   + DGH +IP    
Sbjct: 2   SSTIEEITAILGAKRTGTTSSTIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPDLYQ 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    V++         A+  ++   L+V N  K L   AS+   +    ++ +TG++G
Sbjct: 62  KGVRNFVINEIPEA----ASSYTDANFLIVPNPLKSLQRLASKHREQFQVPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ QI       +         S  + ++++  P  ++L    +      +   
Sbjct: 118 KTVVKEWLYQILSPDRTIT--------RSPRSYNSQIGVPLSVWLMNEHTE-----LGIF 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     I+   G  TN+G  H +   + Q     K++LF+     +    
Sbjct: 165 EAGISEMGEMEALRPIIQPTIGILTNIGGAHQENFSSVQDKCMEKLQLFK---DCDVIVY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  +  V K    A     S     + + ++K+        +     G   ++  P
Sbjct: 222 NGDNELITSCVTKSLFTAREIAWSTKDSERPLFIEKILKDDTGTTIKYRYLGFFKEYRIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + N+L    + + + +    + E +  L  +  R E     +    I   Y   
Sbjct: 282 FIDDASIENSLNCLAVALYLMVPPETIAERMLHLEPIAMRLEVKEGKNGCTLINDSYNSD 341

Query: 366 SNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGKRPIMGKIA----LDLADIAI-VTD 417
             SL++ L  +   +  +     ++     +  Q  + +  ++A        D  I V +
Sbjct: 342 FASLDIALDFMMRRSEDKNRERTLILSDMLESGQTSKLLYRQVADLVHSRKVDHIIGVGE 401

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
           +   + +  +I+ +        +  G         +  L+ +D+L            +  
Sbjct: 402 EISAAANRFEIQKDFFANTSELLNSG--------LLNQLHNEDIL------------IKG 441

Query: 478 GEKKMSVDCDIIREI 492
                  D     E+
Sbjct: 442 ARVFHFDDITDALEL 456


>gi|299142150|ref|ZP_07035283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
 gi|298576239|gb|EFI48112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
          Length = 438

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 141/426 (33%), Gaps = 36/426 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++++SR+     IF+A+ G   DG+ F   A+ +G    ++      +        N  +
Sbjct: 16  ITTNSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAE------ADNDRL 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+        A     +    ++ +TGT+GK++    V  +           G  + 
Sbjct: 70  ILVDDCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSAVLAERYNVMHTEGNFN- 128

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P  L       ++  +  V + AS  G  +  +   +   G  TN+
Sbjct: 129 ---------NDVGVPKTLF---RLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           GR H+    + +     K  L++ L   +    +   +A   ++  +             
Sbjct: 177 GRAHLLGFGSFEGVKQTKGELYDYLKAHDCLLFLNESNADLVDMACQREMNRIITYGQSD 236

Query: 273 QGKFIHLKKVCAIHNKQQV----TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                     CA           T   + + ++    L G + + N L A  + +  G+ 
Sbjct: 237 DANVRGEVIDCAPFLHFSWTDLSTTESKARTYEVESHLIGAYNIDNMLAAITIGLHFGVT 296

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              +   LE       R +     ++   I   Y    +S+   ++N + +     + + 
Sbjct: 297 PEQINHALESYVPANNRSQLE-VTAKNKLIVDAYNANPSSMAAAIENFKLMNVEHKMAIL 355

Query: 389 GCGGDRDQGKRPIMGKIALDL-AD---IAIV-------TDDNPR-SEDPEKIRAEIIHGI 436
           G   +  +       K+   L AD      +       T  N R   + ++++AEI    
Sbjct: 356 GDMRELGEVSELEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRKFRNVDEVKAEIAAHC 415

Query: 437 PGFIEK 442
           P     
Sbjct: 416 PENCYI 421


>gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 216

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 41  QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100
             G +FVA+ G + D H F  +A A GA A++VS    +         + P ++V +TR+
Sbjct: 2   TPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPLDI---------DLPQVIVKDTRQ 52

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                A+ +  + P  ++A+TG+SGK+SV      I  + G + +     + 
Sbjct: 53  AFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNN 104


>gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 321

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +   L   L I    +     NEV  +S+ ++ G +F+A+ GN+ DGH ++  AI +GA 
Sbjct: 4   NSETLNKALGITISNFINC--NEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDAIDKGAV 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++VS    + D          I++V++  + L   A           +A+TG+ GK+S 
Sbjct: 61  AVIVSKQIDIADKDK-------IILVEDCFEALQKMALYKRENSKAKFIAITGSVGKTST 113

Query: 130 ASFVQQICQRSGLSS 144
              ++ +   +   S
Sbjct: 114 KEALKTLLTEANYKS 128


>gi|160880626|ref|YP_001559594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
 gi|160429292|gb|ABX42855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
          Length = 507

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/488 (16%), Positives = 145/488 (29%), Gaps = 53/488 (10%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                   +R I ++S++S+   +  +FV IVG + D H FI  A  QG    + S    
Sbjct: 15  GTIIKGNNDRTIFKISTNSKVGDSDTLFVPIVGERVDAHDFIADAYRQGIRVTLTSK--- 71

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
             D  A    +   + V++T + L              I+ +TG+ GK++    +     
Sbjct: 72  --DEIAEGTEDMVYIKVNHTVEALQRLGEYHRDHSNVPIIGITGSVGKTTTKEMIAAAFS 129

Query: 139 RSGLSSFQIGPTSTISSFAQDN------------RLTTPSPIYLAKALSYLSSQGVTHVS 186
                   IG  ++     Q               +       + +       +     +
Sbjct: 130 TRSNVLKTIGNMNSQVGLPQMMLMLEDTHEVGIIEMGMSEFGEMERIAKVAKPKMAVVTN 189

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY-FNAKMRLFEELLPKESPAI 245
           +  S  G      + I+    +  N   +                   + +         
Sbjct: 190 IGVSHIG-QLKTQENIRKEKLNIVNYFTEDSILLLNGDDQLLLEIYDEYRKDNSSVKEKT 248

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF----- 300
                    E+ +R+ N              I+   +         T   +         
Sbjct: 249 QNNGSVDLSEMTRRSLNKASVYTFGTNPDCTIYADNIKTDGESTTFTFHYKNGTKEELVD 308

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    + G+  + NAL A    I +GID     E L++   +  R E    N  G  I  
Sbjct: 309 DITLSVLGKHNILNALAAIFFAIQLGIDPLAAKEGLKEYKPIAMRGEIEKVN--GITIID 366

Query: 361 D-YAHTSNSLE-MILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA----- 410
           D Y  + +S++  I   +      +  +VF      GD  +     +G+           
Sbjct: 367 DTYNASPDSMKGAIHVIMDMPKEHKKFIVFADILELGDISKKCHYEVGEYLAKQCKIEKA 426

Query: 411 --------DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQD 460
                   D  I        E+ + I   +         K    R EA +     L K+D
Sbjct: 427 CGKESTFIDEVITI-----GEEAKYILDGVRENGEDINTKSFMEREEAFKYIKTNLTKRD 481

Query: 461 VLVVAGKG 468
           V+++  KG
Sbjct: 482 VILL--KG 487


>gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
 gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
          Length = 464

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 175/475 (36%), Gaps = 52/475 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +        L+           +     V +DSR +  G +FVA+ G+  DGH F 
Sbjct: 2   MLLSEAANAIQATLLG---------ADVTFTSVGTDSRSVTKGQLFVALKGDNFDGHSFA 52

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAIAQGA A+++S             +  P ++VD+T + L   A+    K    + AV
Sbjct: 53  AQAIAQGAAAVLISD---------RTLNVQPAILVDDTCQSLGELAAYWRSKFDIPLAAV 103

Query: 121 TGTSGKSSVASFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG++GK++V   +  I +         +     +++           P+ L K  +    
Sbjct: 104 TGSNGKTTVKEMLASILRAACDQPDAVLATVGNLNNHI-------GLPLTLLKLNARHR- 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +  +  G   +     K       N G  HI    + +A   AK  +FE  L 
Sbjct: 156 --YAVAEMGMNHTGEISYLSRIGKPTVALINNAGNAHIGELGSFEAIARAKGEIFEG-LA 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            ++ A+I ADD ++   +  A     ++++ G + K     +     +   + I+     
Sbjct: 213 ADATAVINADDVFAPLWLDLAGQR--KIMTFGLKNKADVTAQYQLHASASDIEITTPQGA 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P PG   V NAL A    +A+G     V   LE    V GR +     +    I 
Sbjct: 271 VKVSLPTPGLHNVMNALAATSTALAMGASLQAVSIGLENYAGVKGRLQQKAGLNGALVID 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
             Y     S+++ +  +  ++  +I+V+   G  GD        +G  A      ++   
Sbjct: 331 DTYNANPMSMKVAIDVLMAMSGEKILVLGDMGELGDNAAEMHAEIGSYAKASGLKSLFVL 390

Query: 418 DNPRSEDPE-----------------KIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
            +  +E  +                  +R ++  G    + KG+R  A+   +  
Sbjct: 391 GDMSAETAKTFGAGAKHYTTPQDLVTDLRKQMQQG-TNVLVKGSRFMAMERVVNE 444


>gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
 gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
          Length = 452

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 149/448 (33%), Gaps = 35/448 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  +     D+R +Q G +F A+ G + DGH F+ QA   GA A VV           
Sbjct: 19  GDDCHVKGACIDTRALQKGQLFFALSGTQRDGHEFVAQAAEAGASAAVVERYLE------ 72

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLS 143
               + P  VV + R  L   A+    +  E   +A+TG++GK++V   ++QI    G +
Sbjct: 73  --DVDLPQCVVSDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEMLKQILSAVGST 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +               P+ L +            + + AS  G  ++     K
Sbjct: 131 CATQGNFN----------NDLGLPLTLLRVGRE---HQFAVLEMGASQFGEIEYLTQVAK 177

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N G  H+D  +                L ++  AII ADD ++        + 
Sbjct: 178 PDVALVNNAGPAHLDGFKDISGVAR-GKGEIYNGLGEKGIAIINADDIHADYWRSLCADK 236

Query: 264 GCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                                   N Q     ++        PL G     NA+ AA + 
Sbjct: 237 TVVSFGLENSADVQGQWSSQTKTLNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAAAVA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G+D   V + L K+  V GR   +        I   Y     SL   +     +   
Sbjct: 297 LAAGVDLDAVEKGLSKVRPVAGRMVPMTARGGFYLIDDTYNANPASLMAGIDVALDMQRP 356

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
             + +      GD  +     +G+         + T      E  +        G   F 
Sbjct: 357 VWLALGDLAELGDNSETVHAQLGEQVQQRGVQRLFTL----GEQSKNAAERFGEGAAAF- 411

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +  EA+   IE L  +DV+++  KG
Sbjct: 412 ---DSPEALAQQIETLATRDVVLLV-KG 435


>gi|110640090|ref|YP_680300.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406]
          Length = 842

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 121/369 (32%), Gaps = 28/369 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHL 58
           MK  D+   + P ++    I         I ++  DSR + A  G +F AI G   DGH 
Sbjct: 21  MKSIDISVNELPGIVQGECIQQSTEPNTFIKQLVIDSRKLMAPAGAVFFAIDGKHHDGHA 80

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            I +   +G    +V  + SL +           + V ++   L   A+    +    I+
Sbjct: 81  HITEMYKKGVRIFIVEKSISLNEIPQAA-----CIRVKSSVSALQACAAYRRKQLDIPIV 135

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++ K+ V  ++ Q                  S  + ++++  P  +      +   
Sbjct: 136 AITGSNAKTIVKEWLSQTVAADYSVV--------KSPRSYNSQIGVPLSV-----WALNE 182

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +       S+    Q     I+   G FTN+G  H    + ++     K++LF +  
Sbjct: 183 RHTIGIFEAGISTTKEMQALQKVIEPTIGIFTNIGSAHDKGFKNREEKIQEKLKLFADCK 242

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                        + +   +                  I          + Q+ +  +  
Sbjct: 243 VVIY------CSDHEEIHAEITAQHLPTFNWSLQSSATIEYSIAAKDSFQTQIEVKTKEH 296

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P   +  + NAL  A     +G     V   +  L  V  R E     +     
Sbjct: 297 QGFFYLPFVDDASIENALHVATTLFYLGYSIQEVSRKISGLQAVGMRLELK--EANNDCY 354

Query: 359 YVDYAHTSN 367
            +D ++ ++
Sbjct: 355 LIDDSYNND 363


>gi|332876573|ref|ZP_08444333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685406|gb|EGJ58243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 464

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 116/379 (30%), Gaps = 41/379 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +D+R I    I+ A+ G   DG+ F  +A+ +GA   V+ +     D          
Sbjct: 28  GVCTDTRKIVPNSIYFALKGASFDGNTFAAEALNKGATLAVIDNPAYQIDERT------- 80

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+V +    L   A+         I+ +TG++GK++    ++ +   +       G  +
Sbjct: 81  -LLVPDVLLALQELANYHRRTLKTLIIGITGSNGKTTTKELIKSVLSEAMQVVATEGNLN 139

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P        +       +            D  R+   +   G  T+
Sbjct: 140 NAIGVPLTLLSIKPETDIAIVEMGANHPHEIA-----------DLSRIA--EPDYGYITS 186

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK------------- 258
           +G+ H++   + +     K  L++ L   +   I  ADD   + +++             
Sbjct: 187 IGKAHLEGFGSFEGVIKTKAELYDYLKAHQKTIIYNADDTLQQSLVEGYANVYSFGTTDE 246

Query: 259 -----RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                         +           +           TI         +  L G +   
Sbjct: 247 VNVPVACVAVQPVSIRFSEGSVLQTEEPATKDLPYIDTTIKGFSGATIAVSHLMGSYNFN 306

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N   A        + +A +   +EK      R + +        +   Y    +S+   +
Sbjct: 307 NIAAAVAFGRYFRLPAAAIKRGIEKYVPHNNRSQLMAWG-TNTLLLDAYNANPSSMAAAI 365

Query: 374 KNIRTI-TSGRIIVVFGCG 391
            N+ T+    + +++ G  
Sbjct: 366 HNVLTMPNFTKKVLILGDM 384


>gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 465

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 144/370 (38%), Gaps = 19/370 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V         
Sbjct: 14  LHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH------- 66

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I +    
Sbjct: 67  -VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILE---H 122

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++ Q       SS   +N +  P  +  A   +  +        + A   G   +  D +
Sbjct: 123 AAAQSSTVVYASSGNCNNEIGLPLAVIAAPDNADFA-----VYEMGAGKLGDIGYLTDIV 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H++   +       K  ++   L     A+I  DDA++    ++   
Sbjct: 178 TPDVALVNNIAPAHLERMGSLLGVARTKGEIYAA-LRPGGTAVINMDDAFALWFEQQCVP 236

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           AGC VL  G Q    +    +    +  +  +     +      L G   V NAL AA +
Sbjct: 237 AGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAM 296

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  GI  + +   L     V GR            I   Y     SL++ +  +    S
Sbjct: 297 ALVAGIPLSQIAAGLGLARSVAGRQVAHALPGGAVLIDDSYNANPGSLDVAIDTLTA-AS 355

Query: 382 GRIIVVFGCG 391
           G   +V G  
Sbjct: 356 GPGWLVLGDM 365


>gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
 gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
          Length = 468

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 144/370 (38%), Gaps = 19/370 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V         
Sbjct: 17  LHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH------- 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I +    
Sbjct: 70  -VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILE---H 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++ Q       SS   +N +  P  +  A   +  +        + A   G   +  D +
Sbjct: 126 AAAQSSTVVYASSGNCNNEIGLPLAVIAAPDNADFA-----VYEMGAGKLGDIGYLTDIV 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H++   +       K  ++   L     A+I  DDA++    ++   
Sbjct: 181 TPDVALVNNIAPAHLERMGSLLGVARTKGEIYAA-LRPGGTAVINMDDAFALWFEQQCVP 239

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           AGC VL  G Q    +    +    +  +  +     +      L G   V NAL AA +
Sbjct: 240 AGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAM 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  GI  + +   L     V GR            I   Y     SL++ +  +    S
Sbjct: 300 ALVAGIPLSQIAAGLGLARSVAGRQVAHALPGGAVLIDDSYNANPGSLDVAIDTLTA-AS 358

Query: 382 GRIIVVFGCG 391
           G   +V G  
Sbjct: 359 GPGWLVLGDM 368


>gi|254751530|ref|ZP_05203567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Vollum]
          Length = 243

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+      F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 1   MNLKK-----FEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 54  KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TG++GK++    V+ I + +       G  ++ 
Sbjct: 108 TGSNGKTTAKDIVEGILRSTYRVHKTKGNFNSQ 140


>gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 466

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 127/389 (32%), Gaps = 27/389 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
           ++E  I  V++ S  ++   +F+ + GN+ DGH FI  A+++GA   +V   + ++  + 
Sbjct: 25  YKESPITTVTTASTEVEKNSLFIPLRGNR-DGHEFIGDALSRGASYFLVEEDHPIRK-NF 82

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
             +     + V +T   L   A+    +    ++AVTG+SGK++    +    +      
Sbjct: 83  DSKERAKAIPVKDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGNCLKNLEEPV 142

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +          ++       P  L +                  +H  +  RL  I  
Sbjct: 143 LVVT--------EKNYNNEIGLPFTLFRISDRTRIVVCELGM----NHKGEIARLTQIAK 190

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +               Q           E L K           YSK +       G
Sbjct: 191 PDFALITTIGTAHIEFLGSQKNIAKAKVEVAEGLVKGGKLFYPDTGEYSKILKSTLRRHG 250

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R++ V     F  L+K  +          +E +D +  + LPG   + N  +A      
Sbjct: 251 SRLILVKPNHIFSVLQKRPSG-------FLLEYRDKEIEWNLPGYKLLENLAIAIACLET 303

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+ +  +L+ +     V  R            I   Y     S+   L+    +  G+ 
Sbjct: 304 VGVPTEWILKGISTFKSVDKRLNLQKGKY--SIINDTYNANYESMLSSLEVTDQLADGKE 361

Query: 385 IVVF----GCGGDRDQGKRPIMGKIALDL 409
             V        G   Q     +GK   + 
Sbjct: 362 FYVVLGDMKELGKHSQKFHKELGKKCSEF 390


>gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
 gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
          Length = 609

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 149/414 (35%), Gaps = 43/414 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 172 NLKDFSEVLKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVK 226

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +         T  ++  I+ V +T   +   A++   K    ++ +T
Sbjct: 227 DVLDKGASLVIADN---------TDIADERIVKVADTIATMQDLATKYRNKLDIQVIGIT 277

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +  +   +    G  +            T               + 
Sbjct: 278 GSNGKTSTKDIVYSLLSKKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 324

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + 
Sbjct: 325 FVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVNKEN 384

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +            +V K              +     ++         + T+  +    +
Sbjct: 385 TFVCGDDVYLAKLDVNKIGF----------NEDNNFIIESYEFSDKGSKFTLDGK----E 430

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G+  + N  +A  L   IG+    + E L+ + +   RF+ +        I   
Sbjct: 431 YEMSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISSMRFQEIRVG-EDIYINDA 489

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y  +  S++  +  +  I + +  I + G   +  + +     ++   L D  I
Sbjct: 490 YNASPTSMKAAIDTLNEIYNDKYKIAILGDMLELGEDEVKYHVEVLNYLLDKKI 543


>gi|294787089|ref|ZP_06752343.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315226742|ref|ZP_07868530.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
 gi|294485922|gb|EFG33556.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315120874|gb|EFT84006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
          Length = 525

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/504 (14%), Positives = 159/504 (31%), Gaps = 59/504 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +       +L+   S       + +++   +DSR ++ G +FVAI G + DGH ++
Sbjct: 4   MTLAETAQAMSGKLLVFESASASIDSQAQVDSAVTDSRQVRPGSLFVAIKGERVDGHAYL 63

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--------- 111
            QA A        + A +         ++ P ++V++T + L   A              
Sbjct: 64  EQAAA--------AGAVAAVVDHEVAGASLPQILVEDTVRALGFLARHNIEKRRSLAGQA 115

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           + P  I+ +TG+ GK++    ++ +    G +    G  +                 +L 
Sbjct: 116 RTPFTIVGITGSVGKTTTKDLIRALLSPLGPTIAPQGSFNNEIGLPLTALQVGEETRFLV 175

Query: 172 KALSYLSSQGVTHVSVEA-SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             +   +   + +++  A     ++           GS  N+ +   +  +       A 
Sbjct: 176 AEMGASAVGEIAYLTTIARPDLAVELKVGVAHLGGFGSVENIRQAKSELVRALPPSGLAI 235

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK-- 288
           +   +E +          +  +      R            Y      +       ++  
Sbjct: 236 LNENDENIRLMPEMTGVRNLLWFGLHEDRPDEDRSDESETAYPSVPSAMSAAEIYGDQVQ 295

Query: 289 ------QQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLH 340
                    T+             LPG   V NAL A  +  A+ + +  +      +  
Sbjct: 296 VDDQDRPSFTVHFPDGTGCPMSLALPGRHNVMNALAAICVAYAMDLPTEAIAGILAHQGA 355

Query: 341 VVPGRFEFVGTNSRGGRI------YVDYAHTSNSLEMILKNIRTIT--------SGRIIV 386
             P R +      R             +    +S++  L  +                + 
Sbjct: 356 QSPHRMDIRQVPFRPDSDLAFTLIDDSFNANPDSMKAGLDGLAAWHAESRTRDERPYRVA 415

Query: 387 VFGCG---GDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDP--EKIRAEIIHGIPGFI 440
           V G     G  ++     MG  AL +AD+ I V  +    E+P  +++  + + G     
Sbjct: 416 VLGSMLELGPNEKELHQRMGAYALSVADMVIAVGSE----EEPHLDELAHDFVLGAD--- 468

Query: 441 EKGNRIEA--IRTAIEMLNKQDVL 462
              ++ EA  I          D++
Sbjct: 469 --HDQKEAGSIHWVHSAEQAADLV 490


>gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum
           aromaticum EbN1]
 gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Aromatoleum aromaticum EbN1]
          Length = 466

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 136/365 (37%), Gaps = 12/365 (3%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
             + V +DSR I+AG +FVA+ G + DGH F+   +   A+    +   +    +  + S
Sbjct: 19  NFSSVGTDSRKIKAGQLFVALRGERFDGHEFV---VQAAADGAAAALVDARWAGTQPVPS 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P+LVV++TR  L   A+    +    ++ VTG++GK++V      + +          
Sbjct: 76  PLPLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVKEMCTAVLRAQARRD--GH 133

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
               + + A +       P+ L +  S         V +  +  G   +     +     
Sbjct: 134 GAEAVLATAGNLNNDIGLPLTLLELRSSHR---AAIVEMGMNRPGEIAYLAGLARPTVAV 190

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN  R H+    T       K  ++E  L  +  A+I ADD  +    +   NA  R L
Sbjct: 191 VTNAQRAHLQGMGTVIGIAREKGAIYEA-LGPDGVAVINADDTQAGYWREL--NAARRTL 247

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                 +     +         + ++           +PGE    NA  AA  C+A G  
Sbjct: 248 VFSLTPRADVAGECTLRGLGSHLVMTTPAGRIAVDLQVPGEHNARNATGAAAACLAAGAS 307

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V E L       GR +     +    +   Y    +SL   +  +   T G+ I+V 
Sbjct: 308 PEAVAEGLAAYTGTRGRLQRRAGPNGAVVLDDSYNANPDSLRAGIDVLAA-TPGQKILVL 366

Query: 389 GCGGD 393
           G  G+
Sbjct: 367 GDMGE 371


>gi|284042879|ref|YP_003393219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
 gi|283947100|gb|ADB49844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
          Length = 447

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/393 (16%), Positives = 123/393 (31%), Gaps = 30/393 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  +   S DSR ++ G ++V IV  + DGH +IP A+  GA A +            
Sbjct: 18  GPDVGVEGASIDSRTLRPGQLYVPIVAER-DGHAYIPAALDAGAPAYLTEQE-------- 68

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   + V +T   +        G+     + VTG+ GK++    +         ++
Sbjct: 69  --PVGGTAIRVGDTAAAMLRLGVLARGRVGG-AIGVTGSVGKTTTKDLLAGCLAARFRTA 125

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                 +               P+ L    +   +     + + A   G D  RL  +  
Sbjct: 126 ASERSFN----------NELGLPLTLF---NAPEAARWAVLEMGARRAG-DIERLAAVAR 171

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                          +                 LP    A++  DD   + +   + +  
Sbjct: 172 PEVGIVTSVDMAHLEYMGDLDGVARVKGELVAALPASGLAVLNFDDPRVRGMASLSASPV 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                 G          +     + +  +S      +    + G  QV NAL AA + + 
Sbjct: 232 LGYSVGGDADVRADDVTLD-QDLRARFRLSSPWGQAEVRLGVHGLHQVPNALAAATVALW 290

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+    V   L +    P R E          +   Y     S E  L+++  +   R 
Sbjct: 291 CGVPIETVAAALAQSKGSPWRMEVHHMPDGPLLVVDCYNAMPTSTEAGLRSLAALPGERK 350

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
           + + G     GD  + +   + ++A +L   A+
Sbjct: 351 LALLGLMAELGDHSESEHRRIARVAEELGIEAV 383


>gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
 gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
          Length = 464

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 143/382 (37%), Gaps = 39/382 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            ++  + +IN +S +S+ +    IFVAI G    G+ F+ +A+ +GA A+  S    + +
Sbjct: 13  KVEISDLEINNISINSKELGKNDIFVAIRG----GNNFVNEALEKGAFAVYDSKTLKIDE 68

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A          V+++ +FL  FA          ++ +TG++GK++V   +  +  +  
Sbjct: 69  KYANRA-----FFVNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKY 123

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G          +N +  P  +     L          + +  S  G        
Sbjct: 124 KGKKTEGN--------YNNHIGLPFTL-----LRAEEDDKFIILEMGMSGFGEIDLLGQI 170

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   TN+G  H+++ +T++  F AK     E++P     ++   D    + +K  +
Sbjct: 171 ALPDINVITNIGESHLEFLKTKENVFLAK----TEIIPYIKNTLVINGDDDYLKNVKAEN 226

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-----------TISVEGKDFDFLFPLPGEF 310
               + L++G                                I     + ++   + GE 
Sbjct: 227 IEVVKALNLGSNEFREKTSDFYYGDVHFNESGTDFFLKYFGKICQSTVERNYKTNVLGEH 286

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N ++A  +    G++  ++ E ++ + +   RF+ +  N     I   Y  +  S+E
Sbjct: 287 NVLNLVMAIAVAKQFGMEDKIISEAVKNIGLTGMRFQII-ENGDTTYINDAYNASPMSME 345

Query: 371 MILKNIRTITSGR-IIVVFGCG 391
             L+    I + R  I+V G  
Sbjct: 346 KSLETFSQIYNDRLKIMVLGDM 367


>gi|326798766|ref|YP_004316585.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
 gi|326549530|gb|ADZ77915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
          Length = 437

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 127/379 (33%), Gaps = 28/379 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +S+D+R+I  G IF A+ G   +G+ F  +A+  GA   +V     + D           
Sbjct: 16  ISTDTRNILPGSIFFALSGATFNGNQFAEKALELGARLAIVDEPIPIVDERIE------- 68

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            VV N  + L   A     +    ++ VTGT+GK++    +Q +  +        G  + 
Sbjct: 69  -VVSNVLETLQNLARYHRDQLQIPVIGVTGTNGKTTTKELLQSVLSQKFNVYATKGNLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                  + L   S I LA      +  G        +   L               TN+
Sbjct: 128 H-IGVPLSVLAIDSAIELAIIEMGANHIGEIAFLCGIARPELGL------------ITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +    AK  L+E L   +    +  D+ +   +             +  
Sbjct: 175 GKAHLEGFGSFEGVKQAKGELYEWLEEHKGVLFLQGDNNHLLSMANNKTFKQIITYGLDK 234

Query: 273 QGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   L     ++       +           L G + + N L A  + +  G++  
Sbjct: 235 SNNISGELLSVNPVLNLGWSSIKAYGYDRQVVPTHLTGSYNLENVLAAVAVGLYFGLNPE 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--- 387
            +   +        R +   T          Y   ++S+   L N+ +I + + + +   
Sbjct: 295 EINRGITAYSPTNNRSQITQTEKNTVICDY-YNANASSMWAALDNLESIHAEKKVSILGD 353

Query: 388 -FGCGGDRDQGKRPIMGKI 405
            F  G +     R ++ +I
Sbjct: 354 MFELGEEAPTEHRRLIERI 372


>gi|256394930|ref|YP_003116494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256361156|gb|ACU74653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 447

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 87/470 (18%), Positives = 147/470 (31%), Gaps = 41/470 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+   +           +    + D R  + G +FVA  G   DGH F+ Q  
Sbjct: 1   MIPLSLEEIAVVVGGTVAGGGSVTVTAPAALDGRKAEPGGLFVAFAGEYADGHDFVDQ-- 58

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTG 122
                    ++         T  ++ P +VV + R+ L   A  +    +    ++ VTG
Sbjct: 59  ---------AARAGAAAVLGTRPTSLPTVVVQDAREALQRLAKHVVDRLRPGLTVVGVTG 109

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+     +  +   +  +    G          +N L  P        L   +    
Sbjct: 110 SQGKTGTKDLIAAVLSSAAPTVATAGSL--------NNELGVP-----LTMLRADAETRF 156

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G      D +        N+GR H+    ++ A    K  L  + L    
Sbjct: 157 LVLEMGARHVGDIAALTDLVAPDVAVVLNVGRAHLGEFGSRGAIAKTKAEL-VQGLAPGG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +     +                L  V     +   T+         
Sbjct: 216 TAVLNADDPRVAAMHTL-TDGPLLTFGRAEHADVQVLYLVLDRLGRPSFTVRTADARAVV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G  Q  NA  A    +A G+      + L    +   R E  G       +   Y
Sbjct: 275 TLPLIGAHQSLNAAAAVTAGLAAGVPLEAATKALATASLSKWRMELRGLAGGATLLNDSY 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
               +S    L  +  I + R I V G     G   + +   +G+ A   AD  I+    
Sbjct: 335 NANPDSTRAALDALAAIEAARRIAVLGEMRELGPSTETEHRAIGRYAAHRAD-IILAVGA 393

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           P       I        P  +   +   A+    E L   DV++V A +G
Sbjct: 394 PAH----PIA---TAAGPRALTLPDNDAALAWLREHLAAGDVVLVKASRG 436


>gi|228914793|ref|ZP_04078402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845112|gb|EEM90154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 252

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 78/196 (39%), Gaps = 17/196 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGEGLHE-SFHHLEIHGVCIDSKNMKEGNVFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++V   ++ I + +       G          +  +  R T    + +  +   
Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKG 176

Query: 177 LSSQGVTHVSVEASSH 192
                    +    + 
Sbjct: 177 CRIIERFTWNSFRGNC 192


>gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 480

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 145/399 (36%), Gaps = 32/399 (8%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              + + + VS+D+R IQ G +F+A+ G   DG  F+ QA      A  V++  +     
Sbjct: 16  DGADVRFSAVSTDTRTIQQGDLFIALKGENFDGARFVAQAA----MAGAVAAVVNRDAGL 71

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            T  S  P+L V++TR  L   A+    +    ++A+TG++GK++V   +  I ++    
Sbjct: 72  RTQDSGVPLLFVEDTRLALGELAAYWRAQFDIPLVAITGSNGKTTVKEMLSAILRQKIKD 131

Query: 144 SFQIGPTSTISSFAQ-------------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                  +      +             +       P+ L +  +         + +  +
Sbjct: 132 DSYDRSLAPRERVGECDDADRFVLATKGNFNNDIGMPLTLLRLRANHR---YAVIEMGMN 188

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                 +             N    H+    T +    AK  +F   L  +  A+I ADD
Sbjct: 189 HPNEIDYLTRIACPDVALVNNATGAHLQGLGTVEGVARAKGEIFAG-LKDDGTAVINADD 247

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A++     R+     RVL    +       K        ++ +     +   +  +PGE 
Sbjct: 248 AHAALW--RSLAGKHRVLDFSLEHPANIQGKWVVQGYGGELLVRTPAGEMRIVLQVPGEH 305

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL AA   +A+ I SA ++  L+    V GR +     +    I   Y     S+ 
Sbjct: 306 NARNALAAATAALALQIPSATIVTGLQGFGGVAGRLQRKQAKNGATLIDDTYNANPASMH 365

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             L+ +     G+ I V G  G         +G+ A   
Sbjct: 366 AALEVLAQ-AKGKRIFVLGDMG--------ELGEDAAQF 395


>gi|319944702|ref|ZP_08018966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741951|gb|EFV94374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 471

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 134/398 (33%), Gaps = 35/398 (8%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           +   +S+DSR ++ G +++A+ G++ DGH FI  AI  GA A++              R 
Sbjct: 23  RFTGISTDSRTVRPGDLYIALRGDRFDGHAFIDAAIDAGAAAVLTE--------VFPERV 74

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P L V +TR+ L   A     +    ++AVTG++GK++    +  I      +     
Sbjct: 75  RVPTLWVPDTRRALGALAGGWRRRFECPLIAVTGSNGKTTAKEMIAAILVAHLGAEAAFA 134

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                ++           P+ L +         +  V +  +  G         +     
Sbjct: 135 TRGNFNNDI-------GVPLTLLRLSDAHR---MGVVEMGMNHPGEIAGLAAMTQPSVAL 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--- 265
             N  R+H ++    +A       +F   L     A+   DD  +      A        
Sbjct: 185 VLNAQREHQEFMDGPEATARENGTVFGA-LAASGVAVFPGDDPCTPIWQALAQGQRVLNF 243

Query: 266 -----------RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                       V S    G              +     +     D    + G   V N
Sbjct: 244 GLVADEAALEADVQSTPDAGTPYLSVAAARDARPEHFRARLGEALVDIRLNIAGRHNVRN 303

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL AA   +A+G+    ++  L     V GR     T      I   Y    +S+   + 
Sbjct: 304 ALAAAACTLALGVPVEAIVRGLAAFEPVSGRLRRTHTAQGVPLIDDTYNANPDSMRAAID 363

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA 410
            +    + R++V+   G  G + +     +G+ A+  A
Sbjct: 364 VLADQPAPRLMVMGDMGETGAQAEAFHREVGEYAVSRA 401


>gi|256379769|ref|YP_003103429.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
 gi|255924072|gb|ACU39583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
          Length = 490

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 90/497 (18%), Positives = 158/497 (31%), Gaps = 69/497 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF------ 59
           L   +  E++             K   V  D+R +  G +F+A+ G + DGH F      
Sbjct: 4   LTLAEIAEIVGGRLHGTDGSPVVK-AGVEFDTRKLLPGGLFLALPGERVDGHDFAAAAVA 62

Query: 60  -------------IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
                         P  IA    A       +      +  S   +L        L   A
Sbjct: 63  AGAAGVLAGREVPAPSVIAP-PVAPADEHEGAYVLSGDSDGSGAAVL------AALGKLA 115

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
             +  +     L V G +G S   S    I Q    +   I P  + ++           
Sbjct: 116 RHVTDRLTAGGLTVVGVTGSSGKTSTKDLIAQVLSPTGATIAPPGSFNNELG-------- 167

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQ 224
                   +  + +   ++ +E S+ G      L  +     G+  N+G  H+    +++
Sbjct: 168 ----HPWTALRADEDTGYLVLELSARGPGHIADLCAVAPPRIGAVLNVGTAHLGEFGSRE 223

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                K  L E  LP++  A++ ADD     + +R       V       +   +  V  
Sbjct: 224 GVARTKGELVEA-LPEDGVAVLNADDPLVLAMAERTKAKVVLVGEHSR-AQVRAVDIVLD 281

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-P 343
              +   T+            + G  QV NAL AA + + +G     V + L     +  
Sbjct: 282 EQARPGFTLLTPHGSARVQLAVHGPHQVGNALTAAAVALELGATPQQVADRLGSAKPISA 341

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRD 395
            R E V        +   Y     S++  LK++ TI+       R   V G     G   
Sbjct: 342 HRMEVVDRADGVTVVNDAYNANPESVKAALKSLATISRSTTPARRSWAVLGPMAELGADS 401

Query: 396 QGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIE 447
                 +G++A+ L  +  +V  D+ R          +  G           I   +   
Sbjct: 402 VRAHDEIGRLAVRLDVNRLVVIGDDAR---------AMHQGAHLEGSWGEESILVPDVAA 452

Query: 448 AIRTAIEMLNKQDVLVV 464
           AI    + +   DV++V
Sbjct: 453 AIELLRDEVRPGDVVLV 469


>gi|29349052|ref|NP_812555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340959|gb|AAO78749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 432

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 157/436 (36%), Gaps = 32/436 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  +A+  G    V+       +    I  +   
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVID------ESEYAIEGDQRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  +S    + +G    
Sbjct: 70  ILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNL-- 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +N +  PS +     L   +   +  + + A+  G  +   +  +   G  TN+
Sbjct: 128 ------NNHIGVPSTL-----LRLKAEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ L  KE   +    D  +  +M  A            
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHD--NAYLMNIAEGLNLIPYGTED 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                      + +   +     +GK +     L GE+   NAL A  +    G++ A +
Sbjct: 235 DLYVNGRITGNSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E L        R +   T+     I   Y     S+   L+N R +     +++ G   
Sbjct: 295 NEALAGYTPQNNRSQLKKTD-DNTLIIDAYNANPTSMMAALQNFRNMEVPHKMLILGDMR 353

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +          KIA  L + A         E    +  +       F    N  E I+  
Sbjct: 354 ELGAESAAEHQKIADYLKECA--------FEKVWLVGDQFAAAEHSFQTYPNVQEVIKEL 405

Query: 453 IEMLNKQDVLVVAGKG 468
                K   +++  KG
Sbjct: 406 EADKPKGYTILI--KG 419


>gi|227815000|ref|YP_002815009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
 gi|227004988|gb|ACP14731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
          Length = 246

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+      F E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 4   MNLKK-----FEEVINGEGLHE-SFHHLEIHGVCIDSKNIKEGNVFVPIIRVK-DGHEYV 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 57  KEAMDNGAIASLWKKSYGSP------PKGIPIIFVDDTLFALQQLAQFYRREINVKVIGI 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TG++GK++    V+ I + +       G  ++ 
Sbjct: 111 TGSNGKTTAKDIVEGILRSTYRVHKTKGNFNSQ 143


>gi|309379062|emb|CBX22364.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 452

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 131/408 (32%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R   +   +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGNDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R HI                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                N   R  + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 KTATLNLNTR--TFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAINVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
 gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
          Length = 824

 Score = 98.4 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 144/384 (37%), Gaps = 25/384 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +       R+  +  + +DSR +      +F A+   + DGH +I +   +G
Sbjct: 4   TIEKVTTLIGARRYGDRDCNVGFILTDSRSLCFPEETLFFALKSERNDGHNYIAELYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VVS    + +  A+   +   L V NT + L   A R   +    I+ +TG++GK+
Sbjct: 64  VRNFVVS---DVPNNFASDYPDANFLRVVNTLEALQRLAERHRDEFNIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  ++L           +     
Sbjct: 121 IVKEWLYQLLSDDMYVT--------RSPRSYNSQIGVPLSVWL-----LNKQTEIGIFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+      TNLG  H +  ++++A    K+ LF          +  
Sbjct: 168 GISEPGEMLALRDIIQPTIAVLTNLGSAHQENFKSKEAKCREKLILF----HDAKTIVYN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DD    + ++  + +G ++          + +K V    N   +  + + K+  ++ P 
Sbjct: 224 MDDEIINDTVESYNYSGEKITWSFKNPKATMFIKSVEKRKNDTVINYNFKDKEGKYILPF 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH-- 364
             E  + N+++ A + + +G+ + ++   + KL  V  R E          I   Y    
Sbjct: 284 IDEASISNSIICAIVTLCLGVSTDVLSRRMAKLEPVAMRLEVKVGQHGCTLINDSYNSDV 343

Query: 365 TSNSLEMILKNIRTITSGRIIVVF 388
            S  + +   N R    GR   + 
Sbjct: 344 NSLDIALDFMNRRPDHKGRRHTLI 367


>gi|46446265|ref|YP_007630.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 841

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/465 (16%), Positives = 144/465 (30%), Gaps = 48/465 (10%)

Query: 30  INEVSSDSRHIQA-GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           I+++  DSRH+ +   +FVA+ G K+DGH F+ QA   GA+  +VS     Q        
Sbjct: 25  IDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSE----QWTPPFNLK 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +L V +    L   A     + P  I+ +TGT GK+ V   + Q+           G
Sbjct: 81  PIFLLKVKSPLSALQEVAKAYRLQLPTKIIGITGTYGKTMVKDLLFQLLSTEKNVCASPG 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             ++    A    LT      LA   + +S +      ++  +  +         +    
Sbjct: 141 SFNSQIGVALS-LLTIQKDQELAIIEAAISKKQ----EMDILADLIRPDYTILTPIGKKH 195

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
              L       ++T +  +      +          ++  D      +     ++     
Sbjct: 196 LATLNDIDTITYETLKLVWATSKTGW---------VLLPNDIYQQFHLKNNLFSSYIWDR 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                   I   K     +  Q+T     +    +      F     + +    ++ GI 
Sbjct: 247 DSKCLPHAIPFSKNSPFASHYQLTFPDSSRYEQQMTNGYSYFLNLINITSKAAWLS-GIK 305

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRII 385
           +  + +  E  +  P R E   +      I        H+ +             S R I
Sbjct: 306 AENIKKIFEYYYPEPSRTEIWKSPIGATFINETSCSDPHSID--RAFKHFEHAAPSQRKI 363

Query: 386 VVFGCGGDR---DQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            +FG         Q     +GK          ++    P     + +  E+   I    E
Sbjct: 364 FIFGGMKGNISFAQNYYTKIGKTISKAHLRHLLLFGHQP----FKTLIDEVKK-ISPETE 418

Query: 442 KGNRI---EAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
                   EA+    + L  QD++++  KG           K   
Sbjct: 419 ILCFKRCEEALNYLQKNLQSQDLILI--KGD---------RKIPF 452


>gi|111018105|ref|YP_701077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
 gi|110817635|gb|ABG92919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
          Length = 504

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 81/503 (16%), Positives = 149/503 (29%), Gaps = 75/503 (14%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E++    +  +     ++   V  DSR + AG +F+A+ G   DGH     A+
Sbjct: 4   MTLARIAEIVGG-ELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGAHVDGHDHAASAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVV-----DNTRKFLSL--------------- 104
             G  A++ +                P +VV     D   K ++L               
Sbjct: 63  EAGVVAVLAARPV-----------GVPAIVVTPTPSDVPSKAMALEHDTDGSGAAVLAAL 111

Query: 105 --FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A           L V G +G +   S    +          + P  + ++       
Sbjct: 112 AKLARASVDGLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHP-- 169

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                     AL   +  G   + + A   G      +      G   N+G  H+    +
Sbjct: 170 --------WTALRADADTGFLVLEMSARGRGHIASLANIAPPKIGVVLNVGTAHLGEFGS 221

Query: 223 QQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           + A   A  ++        +   AI+ ADD     +  R       ++            
Sbjct: 222 RDAIAAAKGELAESLPSADEGGVAILNADDPLVAAMAPRTSAR-VVLVGRSESAHVRATD 280

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKL 339
            V     + + T++           + GE QV NAL AA + +  G D   + +      
Sbjct: 281 IVLDEKARARFTLTAPTGSVAVELAVHGEHQVGNALAAAAVALECGADLEQIAQALSGAA 340

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCG-- 391
            V   R +          +   Y    +S+   LK + ++         R   V G    
Sbjct: 341 AVSARRMDVRDRPDGVTVVNDSYNANPDSMRAALKALVSMARSGRGAARRSWAVLGEMAE 400

Query: 392 -GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIE 441
            G     +   +G+ A+ L  + + IV    P           +  G           I 
Sbjct: 401 LGPESVVEHDAIGRFAVRLDVSRLIIVGTGRP--------ARAMHQGAVMEGSWGEESIL 452

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464
             +   A+      L   D+++V
Sbjct: 453 VPDIAGAVALLEAELAPGDLVLV 475


>gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 458

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 151/458 (32%), Gaps = 52/458 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLF-----------IPQAIAQGAEAIVVSSAYSLQD 81
           +  DSR +  G +FVA+ G + DGH F           +  A    A A++V    +   
Sbjct: 1   MEFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAAREVDAPAVIVPPVPAEAT 60

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               +  +T             L    +       ++ VTG+SGK+S    + Q+ +  G
Sbjct: 61  GLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLEPMG 120

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +    G  +                                 + + A   G      + 
Sbjct: 121 PTVAPPGSFNNELGHPWTALRADED-------------TRHLVLELSARGVGHIAKLCEV 167

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                G+  N+G  H+    +Q+A   AK  L E  LP +  A++ ADD     +  R  
Sbjct: 168 APPRIGAVLNVGHAHLGEFGSQEAVARAKGELVES-LPADGVAVLNADDPLVAAMASRTR 226

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 L     G  +  + +      +   T+           PL GE  V NAL AA 
Sbjct: 227 ARVV--LVGESPGAHVRAEDIVLDEQARPSFTLVAPQGSAQVSLPLHGEHHVGNALSAAA 284

Query: 321 LCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           + + +G     V + L  +  V   R E   T      +   Y     S+   LK + ++
Sbjct: 285 IALELGATLEQVADRLSGVRRVSARRMEVAETADGVTVVNDAYNANPESMRAALKTLASM 344

Query: 380 TSGRI---IVVFGCGGDRDQGK---RPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEI 432
           T GR      V G  G+  +        +G++A+ L  D  +V  D           A +
Sbjct: 345 TRGRPGRAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQ---------AAGM 395

Query: 433 IHGIP-------GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            HG           +   +   A+      L   DV++
Sbjct: 396 HHGASLEGSWGEESVLVPDVDAAVALLRAELRPGDVVL 433


>gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
          Length = 467

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 23  MQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            +  +R     V  DSR +  G +F A+ G + DGH F+  A+A GA A++       + 
Sbjct: 19  AEGPDRPFPFSVCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGGASAVLALRGPGREA 78

Query: 82  FSA-TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++    ++   + VD+    L   A +   +    +  +TG+ GK++ 
Sbjct: 79  RASLPGSADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGKTTT 127


>gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           furnissii NCTC 11218]
          Length = 453

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 142/395 (35%), Gaps = 26/395 (6%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I  VS+D+R I    +FVA+VG + D H F  QA+A GA+A++V  A  +     
Sbjct: 19  GDDTDIAAVSTDTRSIAQDALFVALVGERFDAHEFAAQAVAAGAKALLVERALDV----- 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
               N P LVV NT+  L      ++ +     +A+TG+ GK++V   V  I    G   
Sbjct: 74  ----NVPQLVVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKTTVKEMVASILSAKGQVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
           F  G  +           +TP                   + + A+  G   + +  +K 
Sbjct: 130 FTAGNFNNDIGVPLTLLRSTP-------------QDDYAVIELGANHIGEIAYTVGLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A      + L   + A++  D            +  
Sbjct: 177 DVALVNNVAAAHLEGFGSIDGVKRA-KGEIYQGLSAGNTAVVNLDSQGGALWQSVLADKS 235

Query: 265 CRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  SV       + + +      +    +     D      + G+  V NAL A+ L I
Sbjct: 236 VKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAASALAI 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G   A +   L  L  V GR +          I   Y  +  +++  +  +   ++ R
Sbjct: 296 EMGATLADIQHGLAHLSKVKGRVDVTELTDHITLIDDSYNASVPAMKAAVDLLGGFSATR 355

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +++      G+        +G+ A       ++T
Sbjct: 356 WLILGNMAELGEESLALHQQVGEHAAPFQFDYVLT 390


>gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 458

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 146/446 (32%), Gaps = 45/446 (10%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++    + DSR +  G +FVAI G   DGH +   A+  GA A++ +   +         
Sbjct: 22  RVTGPATIDSRDVPPGGLFVAIPGEHVDGHAYAEAAVRAGAAAVLCTRPVAA-------- 73

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              P ++V +    L L A   + +    + + +TG+SGK+S    +  + +    +   
Sbjct: 74  ---PHVLVPDATVALGLLARATHDRLDRLSTVGLTGSSGKTSTKDLLAHVLEPLAPTVAP 130

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +             PS                  V + A   G             
Sbjct: 131 TGSFNNELGVPLTVLRADPS-------------TRYLVVEMGARGRGHIAALCRISPPDV 177

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+G  H     +      AK  L E  L     A++ ADD     +  R       
Sbjct: 178 AVVLNVGTAHQGEFGSVDDTAVAKGELVEA-LGPGGTAVLNADDPRVAAMAGRTAGQVLT 236

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               G       L          ++T++       F+ P  G     NA   A + +A+G
Sbjct: 237 FGRGGDVRLVDLLTDA---AGHPRITLAHGPDRETFVLPQIGGHHGSNAAATAAVAVALG 293

Query: 327 IDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----TS 381
           +D A V   L    V  P R            +   Y     S+   L+++  +      
Sbjct: 294 VDLATVAARLATATVRSPHRMARHVRPDGLVVVDDSYNANPESVAAALRSVADLGAPGDG 353

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           GR +VV G     G         +G +A +L    +V    P +    +    +  G+P 
Sbjct: 354 GRTVVVLGEMLELGADSADHHRRIGALARELGIGLVVAV-GPGASPVVEGAGALATGVP- 411

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +   A+    E +   D+++V
Sbjct: 412 -----DVAAAVELLHEQVGPGDLVLV 432


>gi|239813922|ref|YP_002942832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
 gi|239800499|gb|ACS17566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
          Length = 471

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 154/433 (35%), Gaps = 36/433 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  V +D+R +  G +FVA+ G + D + F+  A A+GA A +          +      
Sbjct: 25  IARVHTDTRTLAEGDLFVALKGERFDANEFLADAKARGAVAAIAHGGLEAAGLAG----- 79

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              L V ++   L    +    +    ++AVTG++GK++V   +  +             
Sbjct: 80  ---LEVPDSLAALGALGAGWRAQFDLPLIAVTGSNGKTTVTQMIAAVLVAFRGDRALATA 136

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGS 208
            +  +            P+ L +  +         V +  +  G +  RL  I +     
Sbjct: 137 GNFNNEIGV--------PLTLLRLRAK---HQHAVVELGMNHPG-EIARLAAIARPTVAL 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N  R+H+++  T +A       +F   +P++  A+    D ++      AH+   R  
Sbjct: 185 VNNAQREHLEFMATVEAVALENGAVFSF-VPEDGTAVFPHGDEFAPLWNDMAHDGATRRC 243

Query: 269 SVGYQGKFIHLKKVCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
               + +   +  V A   +   QV I     DFD    + G   V NAL A    +A G
Sbjct: 244 MTFGEHEDADISLVAAEWQQGAWQVRIRTPLGDFDAQLHIAGRHNVVNALAATACALATG 303

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI----YVDYAHTSNSLEMILKNIRTITSG 382
           I    +   L     V GR +       GG         Y    +S+   +  +  +   
Sbjct: 304 IPPETIARGLSAFEPVKGRSKASAVLLPGGHSLTLVDDSYNANPDSVRAAIDVLAALPGP 363

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           R++V+   G  G+R       +G  A      A+       +E    I A    G     
Sbjct: 364 RLLVLGDMGEVGNRAPEFHAEVGDWARQRGIEAVYA---LGAETAHSIAA--FDGGDNGR 418

Query: 441 EKGNRIEAIRTAI 453
              + IEA+  A+
Sbjct: 419 HFAD-IEALGAAV 430


>gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
 gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
          Length = 468

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 147/372 (39%), Gaps = 19/372 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V         
Sbjct: 17  LHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH------- 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I +    
Sbjct: 70  -VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILE---H 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++ Q       SS  ++N +  P  +  A   +  +        + A   G   +  D +
Sbjct: 126 AAAQSSTVVYASSGNRNNEIGLPLAVIAAPDNADFA-----VYEMGAGKLGDIGYLTDIV 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H++   +       K  ++   L     A+I  DDA++    ++   
Sbjct: 181 TPDVALVNNIAPAHLERMGSLLGVARTKGEIYAA-LRPGGTAVINMDDAFALWFEQQCVP 239

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           AGC VL  G Q    +    +    +  +  +     +      L G   V NAL AA +
Sbjct: 240 AGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAM 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  GI  + +   L     V GR            I   Y     SL++ +  + T  S
Sbjct: 300 ALVAGIPLSQIAAGLGLARSVAGRQVAHALPGGAVLIDDSYNANPGSLDVAIDTLTT-AS 358

Query: 382 GRIIVVFGCGGD 393
           G   +V G   +
Sbjct: 359 GPGWLVLGDMRE 370


>gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
 gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
          Length = 443

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/370 (14%), Positives = 127/370 (34%), Gaps = 34/370 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+D+R+I  G I+ A+ G   +G+ F  +A+ +GA+  V+             +++ 
Sbjct: 12  TGVSTDTRNIAKGSIYFALKGASFNGNTFAAEALEKGAQYAVID--------EVAYQTSD 63

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +++V +    L   A+         ++ +TG++GK++    ++ +  +        G  
Sbjct: 64  KMILVSDVLTTLQELATYHRNTLKTLVIGITGSNGKTTTKELIKSVLSQQLNVVATQGNL 123

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +             P                +  V + A+  G      +  +   G  T
Sbjct: 124 NNNIGVPLTLLSIKPE-------------TDIAIVEMGANHPGEIAFLCNIAQPDYGYIT 170

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA------- 263
           ++G+ H++   + +     K  L++ L   +   I  AD+  ++ ++    N        
Sbjct: 171 SIGKAHLEGFGSFEGVIQTKGELYDYLKAHQKTIIANADNPITEALLADYDNDYSFGVGK 230

Query: 264 --GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA---LVA 318
                V  VG Q   I  +       ++   + +EG               YN      A
Sbjct: 231 GVNVAVQCVGTQPVTIQFEDASTQTTEEGERVLIEGFTDAPTVATSHLVGSYNFTNIAAA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                   + +  +   +E       R + +        +   Y    +S+   + N+ T
Sbjct: 291 VAFGKFFKLSNEAIKRGIEAYIPQNNRSQLMQWG-SNTVLLDAYNANPSSMAAAIDNLLT 349

Query: 379 ITSGRIIVVF 388
           ++  +  V+ 
Sbjct: 350 MSDEKKKVLI 359


>gi|262316882|emb|CAZ44331.1| putative UDP-N-acetylmuramoylanalyl-D-glutamate-2-6-diaminoligase
           [Raphanus sativus]
          Length = 137

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 23/114 (20%)

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK------------------- 442
           M KIA + +D+ ++T DNP +EDP  I  +++ GI   +++                   
Sbjct: 1   MTKIATEKSDVTMLTSDNPGNEDPLDILDDMLAGIGWTMQEYLKHGEHDYYPPLANGHRL 60

Query: 443 --GN-RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              + R  A+R A+ M  + D++VVAGKGHE    +   +K+   D +  RE L
Sbjct: 61  FLHDIRRVAVRCAVAMGEEGDMVVVAGKGHEAYQ-LEGDKKEFYDDREECREAL 113


>gi|253571213|ref|ZP_04848620.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839166|gb|EES67250.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 432

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 157/436 (36%), Gaps = 32/436 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR+   G +F+A+ G   +G+ F  +A+  G    V+       +    I  +   
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVID------ESEYAIEGDQRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  + L   A+    +    ++ +TGT+GK++    +  +  RS    + +G    
Sbjct: 70  ILVDDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSRSHNILYTLGNL-- 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +N +  PS +     L   +   +  + + A+  G  +   +  +   G  TN+
Sbjct: 128 ------NNHIGVPSTL-----LRLKTEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ L  KE   +    D  +  +M  A            
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDFLRKKEGSTVFIHHD--NAYLMNIAEGLNLIPYGTED 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                      + +   +     +GK +     L GE+   NAL A  +    G++ A +
Sbjct: 235 DLYVNGRITGNSPYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKI 294

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E L        R +   T+     I   Y     S+   L+N R +     +++ G   
Sbjct: 295 NEALSGYTPQNNRSQLKKTD-DNTLIIDAYNANPTSMMAALQNFRNMEVPHKMLILGDMR 353

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +          KIA  L + A         E    +  +       F    N  E I+  
Sbjct: 354 ELGAESAAEHQKIADYLKECA--------FEKVWLVGDQFAAAEHSFQTYPNVQEVIKEL 405

Query: 453 IEMLNKQDVLVVAGKG 468
                K   +++  KG
Sbjct: 406 EADKPKGYTILI--KG 419


>gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1
 gi|88192085|pdb|2AM2|A Chain A, Sp Protein Ligand 2
          Length = 454

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 151/479 (31%), Gaps = 56/479 (11%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
            L   +  +++   +   + + + ++ +   DSR I  G +FV + G + DGH FI  A 
Sbjct: 2   KLTIHEIAQVVGAKNDISI-FEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAF 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             GA   +               SN P ++VD+        AS    K   ++ AVTG++
Sbjct: 60  ENGAAVTLSEKEV----------SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSN 109

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  +      +    G          +N +  P              +G   
Sbjct: 110 GKTTTKDXLAHLLSTRYKTYKTQGN--------YNNEIGLP-------YTVLHXPEGTEK 154

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +E     L    L        +              +     AK +            
Sbjct: 155 LVLEXGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKXQIADGXASGSL 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++   D   ++ +                G+   L+    +  K  +T      +     
Sbjct: 215 LLAPADPIVEDYLPIDKKVV-------RFGQGAELEITDLVERKDSLTFKANFLEQALDL 267

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+ G++   NA +A+ + +  G+    +    + L +   R E+    +    +   Y  
Sbjct: 268 PVTGKYNATNAXIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNA 327

Query: 365 TSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLA----DIAIVTD 417
              + ++IL+    I     G+ I V     +       +  +  L L+    DI I   
Sbjct: 328 NPTAXKLILETFSAIPANEGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIF-- 385

Query: 418 DNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ED  ++                    ++    + ++   E L   D +++  KG
Sbjct: 386 ---YGEDIAQLAQLASQXFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILL--KG 439


>gi|88802248|ref|ZP_01117775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
 gi|88781106|gb|EAR12284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
          Length = 418

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 66/164 (40%), Gaps = 9/164 (5%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +D+R I+   +F A+ G   +G+ F  +A+AQGA   ++  A                ++
Sbjct: 18  TDTRSIRKNTVFFALKGANFNGNAFAAEALAQGASLSIIDDAAYFTGPKT--------IL 69

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           VDN  + L   A     +    +LA+TG++GK++    +  +  +   ++   G  +   
Sbjct: 70  VDNVLETLQALARYHRKQLKIPVLALTGSNGKTTTKELISAVLSKKYRTTATHGNLNNHI 129

Query: 155 SFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                    TP   I + +  +    +     S+ A  +G   +
Sbjct: 130 GVPLTLLSMTPKTEIGIVEMGANHQKEIAFLCSLAAPDYGYITN 173


>gi|308235558|ref|ZP_07666295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 576

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/403 (14%), Positives = 128/403 (31%), Gaps = 22/403 (5%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +   +   +  I   +SDSR +    IFVAI G++ DGH F+ +A   GA+  +V     
Sbjct: 56  NDVVISDNDVVI-YATSDSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVK 114

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPENILAVTGTSGKSSVASFV 133
           L + +    S    +VV+N+ + L L A     +      P +I+ +TG+ GK++    +
Sbjct: 115 LDESN---NSKIAQIVVENSVEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDML 171

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +    G +   IG  +          L          A    +  G        +   
Sbjct: 172 KALLSTLGNTVAPIGSFNN-EIGLPLTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPD 230

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L      G+  +    +                  A              A+    D   
Sbjct: 231 LAVVLKVGVAHLGEFGSVERIAQAKSEIV--RGLVAHGIAILNADDFRVSAMRSLADQDK 288

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE---- 309
                +  N      +       +    +          +  E  +      +       
Sbjct: 289 LRWFGKNSNTEGDFDASNNGNYQLSASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQ 348

Query: 310 --FQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRI---YVDYA 363
               V NA+ A+ +    G++   + + L ++ H+ P R +    ++           + 
Sbjct: 349 GQHNVMNAMAASNVARYFGMNLDSIAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFN 408

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              +S++  +  + +  +  +  +     +    K+  + +IA
Sbjct: 409 ANPDSMKAGIDGLCSYENHDLHDLNVNTEEDLTSKKNNIFRIA 451


>gi|317122782|ref|YP_004102785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592762|gb|ADU52058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
           marianensis DSM 12885]
          Length = 592

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 69/242 (28%), Positives = 106/242 (43%), Gaps = 10/242 (4%)

Query: 10  DFPELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D P L+  L+           + E+ + S  +Q G +FVAI G + +G  F  +A+ +GA
Sbjct: 4   DLPVLLQGLTFRVAGAPAPPQVAEIRTHSSRVQRGDLFVAIPGRRHNGVAFAGEAVRRGA 63

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV--TGTSGK 126
             IV                    + V + R  LS  A+  YG     +L V  TGT+GK
Sbjct: 64  RVIVAEQPPPGPLPPG-----VTWIQVPDARAALSRLAANRYGHPAGRLLVVGITGTTGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ A  +  + + +G  +  +G             RLTTP P+ L   L  + + G T V
Sbjct: 119 TTTALLLHHLLKAAGWRAGLVGSLEVDTGRRRFTGRLTTPDPLELHGYLREMVTAGCTAV 178

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGR-DHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +E SS G+DQ R+D +    G  TNL   +H++YH T   Y  AK R    + P     
Sbjct: 179 VMEVSSQGVDQRRVDDVPFALGVVTNLAPLEHMEYHPTYDHYAAAKARFVAMIPPHGGVL 238

Query: 245 II 246
           + 
Sbjct: 239 MH 240



 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 54/167 (32%), Gaps = 17/167 (10%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N + A G  + +GI   LV   +      P R E +        +  D A   +SL
Sbjct: 379 HHALNVVAAVGAALWLGIHPDLVARAVPAFPAPPRRTEVLMQ--YPFTVIDDTAGRPDSL 436

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRP----IMGKIALDLADIAIVT--------D 417
               K    I   R++ VF   G R +         +   A  L    I+T        D
Sbjct: 437 AACFKVASRIPHRRLVAVFAVRGRRGEALNYANGLQLACEARRLRAQLIITASLEVTGPD 496

Query: 418 DNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           D  +  + E   A +  G              +AI  A+  L + D+
Sbjct: 497 DAVQPAEWEACLAGLEAGGLRSSDVETHARLDDAIAAAVARLREGDL 543


>gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 823

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 114/361 (31%), Gaps = 31/361 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   L        +  I+ + +DSR +   A  +F A+     DGH +I +    G 
Sbjct: 5   IHKIAKILDAIVSDLNDADISILLTDSRQVFYPAETLFFALSTKNNDGHKYINELYELGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS             ++   LVV NT   L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSQILP----DWENYNDANFLVVTNTLAALQRIAAYHRNQFDIPVIGITGSNGKTV 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ QI  +    +                   +P        +     Q   H  + 
Sbjct: 121 VKEWLYQILHQDFNITH------------------SPRSYNSQIGVPLSVWQMNDHTQLG 162

Query: 189 ASSHGLDQHRLDG-----IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               G+ Q          I+   G  TN+G+ H +  ++ +     K+ LF         
Sbjct: 163 IFEAGISQPEEMSKLEAIIRPTIGILTNIGQAHQEGFKSMKQKCLEKLELFINCDVIICE 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D   +  +    +        G     +++ K+        +  SV G     +
Sbjct: 223 EENELIDECME--IACLSHKRLTWSRRGSSKSPLYIMKIEKQEKSTTIHYSVLGMASKLV 280

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P   +  + +A+        + +    + E +  L  V  R +     +    I   Y 
Sbjct: 281 IPFSDDASIEDAIHVLATAFYLHMSLPDINERMSTLEPVAMRLDVRQGKNNSTLINDSYN 340

Query: 364 H 364
            
Sbjct: 341 S 341


>gi|325203523|gb|ADY98976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240355]
          Length = 436

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 129/399 (32%), Gaps = 34/399 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ + +DSR  +AG +F A+ G + D H F+                 +        R +
Sbjct: 8   VSRIVTDSRDSRAGDVFFALAGGRFDAHDFVED------------VLAAGAAAVVVSRED 55

Query: 90  TP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                  L VD+T   L + A          +  +TG+ GK++V   +  + +R      
Sbjct: 56  CVAMDGALKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDA 115

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +      ++           P+ L              + +  +  G         K  
Sbjct: 116 VLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELAVLTQIAKPD 165

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A    N+ R H+                  + L  +  A+I  +DA          N   
Sbjct: 166 AALVNNVLRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNT 225

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R  + G     +H + +       +  +    +    + P+PG   V+NA  AA L +A 
Sbjct: 226 R--TFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAA 283

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+    V E L+    + GR            I   Y    +S++  +  +  + + R I
Sbjct: 284 GLSLNDVAEGLQGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVLARMPAPR-I 342

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
            V G  G+  + +   M       A     + A    DN
Sbjct: 343 FVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 381


>gi|311114354|ref|YP_003985575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310945848|gb|ADP38552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 577

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 59/403 (14%), Positives = 128/403 (31%), Gaps = 22/403 (5%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           +   +   +  I   +SDSR +    IFVAI G++ DGH F+ +A   GA+  +V     
Sbjct: 57  NDVVISDNDVVI-YATSDSRKVVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVK 115

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-----HPENILAVTGTSGKSSVASFV 133
           L + +    S    +VV+N+ + L L A     +      P +I+ +TG+ GK++    +
Sbjct: 116 LDESN---NSKIAQIVVENSVEALGLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDML 172

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +    G +   IG  +          L          A    +  G        +   
Sbjct: 173 KALLSTLGNTVAPIGSFNN-EIGLPLTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPD 231

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L      G+  +    +                  A              A+    D   
Sbjct: 232 LAVVLKVGVAHLGEFGSVERIAQAKSEIV--RGLVAHGIAILNADDFRVSAMRSLADQDK 289

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE---- 309
                +  N      +       +    +          +  E  +      +       
Sbjct: 290 LRWFGKNSNTEGDFDASNNGNYQLSASDISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQ 349

Query: 310 --FQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRI---YVDYA 363
               V NA+ A+ +    G++   + + L ++ H+ P R +    ++           + 
Sbjct: 350 GQHNVMNAMAASNVARYFGMNLDSIAKVLHEVSHISPHRMQLSKISNNNNVFTLIDDSFN 409

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              +S++  +  + +  +  +  +     +    K+  + +IA
Sbjct: 410 ANPDSMKAGIDGLCSYENHDLHDLNVNTEEDLTSKKNNIFRIA 452


>gi|329895275|ref|ZP_08270917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
 gi|328922397|gb|EGG29740.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
          Length = 449

 Score = 97.7 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 145/442 (32%), Gaps = 38/442 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  ++ DSRH+Q+G +FVA  G+K DGH ++  A A+GA A +V     ++         
Sbjct: 25  IQGLNFDSRHVQSGDLFVAFKGDKADGHDYVEAARARGAVAALVERWVPVE--------- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              + V++    L+ +A  +        + +TG++GK++V S V  I    G +S   G 
Sbjct: 76  ITQIRVEDCLSALAEWAKSVRQSSAATFVGITGSAGKTTVKSTVAHILSAQGATSATQGN 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +             P                   V + A   G   +    ++      
Sbjct: 136 YNNEIGVPLTLLELGPE-------------DQFAVVEMGARFKGDIAYLCALVEPNVRIL 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H++   +      A+ +       K +   +   D+      +           
Sbjct: 183 TAVLPAHMETFGSIDVI--AQTKGEIFDGMKPTDVAVMPGDSPYLSAWQTRAAGKIVTFG 240

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L       +   + +     + + +  L G     N   + G C+A G+  
Sbjct: 241 YSEANDIQILDVSDRGFSGLALRLRTPAGECEVVSGLVGAHNASNIAASVGACLACGMSL 300

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             ++  +  +  V GR   +  + +   +   Y  +  ++   L  +      R+ ++  
Sbjct: 301 DTIVAQVASVQAVQGRLARIILSDKTTLVDDSYNASPEAMRQALAALERSPGARLAILGP 360

Query: 390 CGG---DRDQGKRPIMGKIALDLADIAI--------VTDDNPR-SEDPEKIRAEIIH--G 435
                 + D+  R ++ +      +           +TD   R   D + I  E+     
Sbjct: 361 MAELGVNSDEYHRQVIEQALAGSVNEIWLSGASWPDLTDSRLRYFADTQAIIDELRSVPV 420

Query: 436 IPGFIEKGNRIEAIRTAIEMLN 457
               + K +R   +      L 
Sbjct: 421 FDWILVKASRSARLDRVASHLQ 442


>gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
          Length = 468

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 135/348 (38%), Gaps = 18/348 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  +  D+R +  G ++VA+ G + D HLF  +A+A+GA  ++V         
Sbjct: 17  LHGEDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAAGVLVDH------- 69

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                 + P +VV +T + L+  AS L       +LA+TG++GK+SV + +  I +    
Sbjct: 70  -VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAMLVSILE---H 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++ Q       SS  ++N +  P  +  A   +  +        + A   G   +  D +
Sbjct: 126 AAAQSSTVVYASSGNRNNEIGLPLAVIAAPDNADFA-----VYEMGAGKSGDIGYLTDIV 180

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+   H++   +       K  ++   L     A+I  DDA++    ++   
Sbjct: 181 TPDVALVNNIAPAHLERMGSLLGVARTKGEIYAA-LRPGGTAVINMDDAFALWFEQQCVP 239

Query: 263 AGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           A C VL  G Q    +    +    +  +  +     +      L G   V NAL AA +
Sbjct: 240 ASCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAAM 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            +  GI  + +   L     V GR            I   Y     SL
Sbjct: 300 ALVAGIPLSQIAAGLGLARSVAGRQVAHALPGGAVLIDDSYNANPGSL 347


>gi|225023745|ref|ZP_03712937.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
 gi|224943627|gb|EEG24836.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
          Length = 464

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 139/396 (35%), Gaps = 25/396 (6%)

Query: 20  IFPMQWRERKINEVSSDSRHI----QAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
             P       I  V +DSR      + G  +FVA+VG+K D H F+P  +AQGA A+V  
Sbjct: 18  NLPAPQHNLPIRRVITDSRQAAAADERGTDLFVALVGDKHDAHDFVPAVLAQGALALVSR 77

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                   S         L V +T   L   A+         +L +TG+SGK++V   + 
Sbjct: 78  QDCIALSGS---------LPVADTLAALQTLAAAWREAVNPMVLGITGSSGKTTVKEMLA 128

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +R    +  +      ++        T   +   +  + +         ++A     
Sbjct: 129 AILRRQFGEAAVLATAGNFNNHIGLPL--TLLALRPQQRYAVIEMGMNHFGELDA----- 181

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              R+      A    N  R HI                    LP+   A+I A+D Y++
Sbjct: 182 -LTRIA--CPDAALVNNALRAHIGCGFDGVGDIARAKSEIYRGLPESGTALIPAEDEYAE 238

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                      R +  G     +H + V  +    +  +  + +      P+PG+  V N
Sbjct: 239 VFRAACRALNLRQIEFGVDKGEVHAENVRLLPLGCRFDLVWQDQRAAVELPVPGKHNVAN 298

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ AA L +  G+  +     L     + GR +          I   Y    +S++  L 
Sbjct: 299 AVAAAALALQAGVGLSESATALAGFANIKGRLQRKAGLRGSTIIDDTYNANPDSMKAALD 358

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +  + + R I V G  G+    + P +       A
Sbjct: 359 VLVELPAPR-IFVMGDMGELGDDEAPALHAEIGRYA 393


>gi|289443664|ref|ZP_06433408.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
 gi|289416583|gb|EFD13823.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 219

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 39  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 98

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 99  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 184 HVSV 187
            V +
Sbjct: 216 TVVM 219


>gi|317489849|ref|ZP_07948343.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911047|gb|EFV32662.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 269

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR  + G ++VA+ G + DGH F+  A++ GA   +V                 
Sbjct: 28  TGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGAVCALVMQPLDEAVRMLAAELGA 87

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            ++ V +T   ++  A          ++A+TG++GK++  + V+ +   +  +    G  
Sbjct: 88  SVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTTTKNLVRDVLASTLSTVATAGN- 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                  Q+N L  P  +     L+         V +     G      D ++   G   
Sbjct: 147 -------QNNELGVPKTL-----LAAEQDTQAVVVEMGMRGAGQLADLCDYVRPDWGLVV 194

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           N+G  HI+   +++    AK  L   L      A + ADD Y+  V + 
Sbjct: 195 NVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREH 243


>gi|260911068|ref|ZP_05917704.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634872|gb|EEX52926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 433

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 134/423 (31%), Gaps = 35/423 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   AG IF A+ G   +G+ F   A+ QG   +VV  A         ++ +   
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCAFVVVDEA------EYCVQGDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VDN  +   L A          I+ +TGT+GK++    +  +        + +G  + 
Sbjct: 70  ILVDNVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGEKYNVLYTLGNFNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                V  V + AS  G  +  ++ ++      TN+
Sbjct: 130 DIGVPKTLLRLKPE-------------HEVAVVEMGASHPGDIKTLVELVEPDLALITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           G  H+    + +     K  L++ +   +     + A++ +   + +          +  
Sbjct: 177 GMAHLQGFGSFEGVVKTKGELYDFMRQSKRGKVFVDANNPHLMGIAEGLDLVKYGTPARP 236

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                  +                   +        G + V N L A  + + +G+ +  
Sbjct: 237 DLFVSGKVVSAAPFLRFAWQREGGAWNEVQTHL--VGAYNVLNMLAAISVGLYLGVSADE 294

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
               L        R +     +    I   Y     S+ + L N   +     + + G  
Sbjct: 295 ANRALAHYVPSNNRSQLE-ETAHNKLIMDAYNANPTSMSVALNNFHDMEVPHKMAILGDM 353

Query: 392 GDRDQGKRPIMGKIALDLA----DIAIV-------TDDNPR-SEDPEKIRAEIIHGIPGF 439
            +           IA  L+    D   +       T    R   D E++ AE+    P  
Sbjct: 354 LELGAVSESAHQAIADQLSQLALDEVWLVGPEFARTHCAFRKFNDVEEVIAELKKHRPEN 413

Query: 440 IEK 442
              
Sbjct: 414 HYI 416


>gi|260201274|ref|ZP_05768765.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 205

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 6/184 (3%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 25  LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 84

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTS 124
           GA A++   A   +      R+  P+LV    R  L   A+ +YG   E   ++ +TGTS
Sbjct: 85  GAVAVLTDPAGVAE---IAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++    V+   + +G  +  IG            + LTTP    L   L+ +  +GV 
Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 201

Query: 184 HVSV 187
            V +
Sbjct: 202 TVVM 205


>gi|189464363|ref|ZP_03013148.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
 gi|189438153|gb|EDV07138.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 66/439 (15%), Positives = 152/439 (34%), Gaps = 34/439 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V++DSR+   G +F+A+ G+  +G+ F  +A+  G+   +V       +       + 
Sbjct: 14  TSVTTDSRNCPEGSLFIALKGDNFNGNAFATKALESGSNYAIVD------EVEYAPAGDP 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++VD+    L   A+    +    I+ +TGT+GK++    +  +        +  G  
Sbjct: 68  HYILVDSCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELIAAVLSPKYTILYTQGNL 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ L +  +      +  + + AS  G  +  +D  +   G  T
Sbjct: 128 NNH----------IGVPLTLLRLKAE---HDLGIIEMGASHPGDIKELVDIAEPDYGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +     K  L++ L  ++   I    D  +  +   A          
Sbjct: 175 NVGKAHLEGFGSFEGVIKTKGELYDYLRERKDSTIFIHHD--NLYLRNIAWGLNQISYGS 232

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                        + +   +     +G+  +    L GE+   NAL A  +     ++S 
Sbjct: 233 EDGLYINGHVTGNSPYLTFEWKAGKDGEHHEVKTQLIGEYNFANALAAVTIGHFFDVESG 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L++      R +     +    I   Y     S++  + N   +     +++ G 
Sbjct: 293 KIDTALKEYTPQNNRSQL-KQTADNTLIIDAYNANPTSMQASISNFHNMEIDNKMLILGD 351

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
             +  +       KI         +T+     +D   +  +       F    +   A+ 
Sbjct: 352 MRELGKDGPKEHQKIVD------FLTE--CGFKDVMLVGEQFAAARHDFPTYPD-APAVI 402

Query: 451 TAIEMLNK-QDVLVVAGKG 468
            A++        +++  KG
Sbjct: 403 EALQKNKPHGKTILI--KG 419


>gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102]
 gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal:
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 8102]
          Length = 449

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 83/451 (18%), Positives = 154/451 (34%), Gaps = 44/451 (9%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            ++ +  + +DSR ++AG  FV +VG + DGH F+ Q  A G +  VVS      D++A 
Sbjct: 22  PDQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVS-----LDWTAP 76

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           + S      VD+T       A     +    ++AVTG++GK++    ++ +    G    
Sbjct: 77  LPSGLLHWRVDDTLAAYQQLALLHRRQLGLPLVAVTGSAGKTTTRELIRAVLAPLGAIQA 136

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G  +               P+ +  A S  +      + +     G         +  
Sbjct: 137 SDGNNN----------NDIGVPLTVLGAGSDHA---ALVIEMGMRGPGEIARLSRCTEPD 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+G  HI    +++A   A        L  +   +I A D   ++ +        
Sbjct: 184 VAVITNIGTAHIGRLGSREAIATA-KCEITAALHPQGVVVIPAGDPLLEQALAAVWQGRV 242

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             + +           + A          +   +     PL G     N L+A  +   +
Sbjct: 243 LRVRLEDD------PDITADLIGAARNDRLLLDEASIPLPLDGRHNARNLLLALAVGSHL 296

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D A   +    +     R    G    G  +  +  + S    +   ++     GR  
Sbjct: 297 GVDPASAAQLQVNIPGGRNRRLQQG----GLTLLDETYNASPEAVLAALDLLADQPGRRF 352

Query: 386 VVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            V G     GDR       +   A  L  D  ++ D      D  +  A ++  +     
Sbjct: 353 AVLGTMLELGDRSIELHQQVAARAAALKLDGVVLVD----GGDEGQAMANVVSCLDRLAL 408

Query: 442 KGNRIEAIRTAI---EMLNKQDVLVV-AGKG 468
                 A   A+   + L   DV+++ A +G
Sbjct: 409 VATPEAA---AVPLGQWLQAGDVVLLKASRG 436


>gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter heparinus DSM 2366]
 gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366]
          Length = 817

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 141/417 (33%), Gaps = 35/417 (8%)

Query: 7   IYKDFPELINQLSIFPMQW-RERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQA 63
           +  +   +   L I   +  ++  I+++  DSR +    G +F A+ G + DGH F+  A
Sbjct: 4   LIYNIKHIAGILGIKNFEVQKDAIISKLVIDSRSVIDPDGSLFFALKGQR-DGHGFLKDA 62

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            A G    V+S A   + F      +  IL+V +    L   A     ++   +L +TG+
Sbjct: 63  YANGIRNFVISEAKYTRLFP-----DANILLVQDVLLALHTIAKYNRNQYDLKVLGITGS 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           +GK+ V  ++ Q+              ++          +T    + + +A    + +  
Sbjct: 118 NGKTIVKEWLYQLLAADHNIVRSPKSFNSQIGVPLSVWEITAIHTLGIFEAGISKTDEMD 177

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              S+   + G+  +  +       S      + +        +  A             
Sbjct: 178 ALASMIKPNVGILTNVGEAHAEGFVSLKEKLLEKLKLFNDADLFIYAP------------ 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                    Y+  +         +      Q   + +  V  I  K  +    +G + + 
Sbjct: 226 --------EYTAGLSTDDLPGKTKFSWSKKQQADLQILFVEPIDGKNYIRADFKGIEIEC 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           L P   +  V N ++     +A+G       + LEKL  V  R E     ++   I   Y
Sbjct: 278 LIPFSDQASVENGIICWATLLALGYTPEEADKRLEKLTRVSMRLELKNGINQCSVIDDSY 337

Query: 363 AHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAI 414
           +   +SL + L  +       +  ++     +  +  R +  +IA        D  I
Sbjct: 338 SADISSLAIALDFLNLQNQHPKKTLILSDIYETGKTNRVLYTEIAALLKQKHVDRLI 394


>gi|124265651|ref|YP_001019655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
 gi|124258426|gb|ABM93420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
          Length = 470

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 130/380 (34%), Gaps = 23/380 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V SD+R ++AG +FVA+ G + D H F+PQA          + A +         +    
Sbjct: 30  VHSDTRTLRAGDLFVALKGERFDAHDFLPQAR--------AAGAVAAIAEHGLAEAGLAG 81

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V ++R  L    +    +    ++AVTG++GK++V   +  I +     +      + 
Sbjct: 82  LHVADSRAALGTLGANWRARMSLPLIAVTGSNGKTTVTQMIASILRAWVGDAAFATEGNF 141

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +       L       L       +      V +  +  G                 N 
Sbjct: 142 NNDIGVPLTL-------LRLRQDADTWHRAAVVELGMNHVGEIAQLARMAAPTVALVNNA 194

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H ++  + +A       + E  L     A+  +DDA++     +A       L+   
Sbjct: 195 QREHQEFMASVEAVARENGAVIEV-LGANGTAVFPSDDAHAAVW--QALAGTRPTLTFSL 251

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +G    + +     +     +            + G   V NAL A    +A G     V
Sbjct: 252 EGPSDLVAEAVWSGDHWAAVLHTPAGATAIRLRVAGWHNVKNALAATACALAAGCPLEAV 311

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVV-- 387
              LE    V GR +       G     +   Y    +S+   +  + T+   R +V+  
Sbjct: 312 ARGLEAFEPVKGRSQVKALQRGGRAVTLVDDSYNANPDSVRAAIDVLATLPGPRWLVLGD 371

Query: 388 FGCGGDRDQGKRPIMGKIAL 407
            G  GD+       +G+ A 
Sbjct: 372 MGEVGDQGPAFHAEVGRYAA 391


>gi|258540735|ref|YP_003175234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|257152411|emb|CAR91383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 462

 Score = 97.3 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 135/411 (32%), Gaps = 32/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++      + +++     +         V+ DSR ++ G +FV + G + DGH FI
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVA------TGVAFDSRRLKPGMLFVPLHGER-DGHEFI 55

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENILA 119
           P        A   + A  + +    + +  P LVV +    +   A      K    ++A
Sbjct: 56  PA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       I            P +  +       + +  P            
Sbjct: 110 ITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT---------- 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +     G   H L  +     +   +  +        +A          + L 
Sbjct: 158 -EVLVLEMGMDRPG-QLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLK 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++   I   D+     ++ RA        + G   +        + H         +  +
Sbjct: 216 EDGTFIFNGDEP---LLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVEQWPE 272

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ GE+ V NAL A  +     +    + + L    V   R +++  +     + 
Sbjct: 273 LTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALAHFQVTANRTQWLIGDVGEQILS 332

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             Y     +++ ++ +     + GR I V G   +     R +   +A  L
Sbjct: 333 DVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGDQSRALHAGLADAL 383


>gi|229551598|ref|ZP_04440323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315063|gb|EEN81036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
          Length = 463

 Score = 97.3 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 135/411 (32%), Gaps = 32/411 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++      + +++     +         V+ DSR ++ G +FV + G + DGH FI
Sbjct: 4   MTLAEIARVVKAQPLSETVGSQVA------TGVAFDSRRLKPGMLFVPLHGER-DGHEFI 56

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENILA 119
           P        A   + A  + +    + +  P LVV +    +   A      K    ++A
Sbjct: 57  PA------AAAAGAVATFVAEDHLPMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVA 110

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++       I            P +  +       + +  P            
Sbjct: 111 ITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT---------- 158

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V  + +     G   H L  +     +   +  +        +A          + L 
Sbjct: 159 -EVLVLEMGMDRPG-QLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLK 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ++   I   D+     ++ RA        + G   +        + H         +  +
Sbjct: 217 EDGTFIFNGDEP---LLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVEQWPE 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P+ GE+ V NAL A  +     +    + + L    V   R +++  +     + 
Sbjct: 274 LTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALAHFQVTANRTQWLIGDVGEQILS 333

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             Y     +++ ++ +     + GR I V G   +     R +   +A  L
Sbjct: 334 DVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGDQSRALHAGLADAL 384


>gi|332527091|ref|ZP_08403171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111522|gb|EGJ11504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
          Length = 448

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 135/379 (35%), Gaps = 28/379 (7%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
              V +D+R +Q G +FVA+ G + DGH F+  A   GA A +     S           
Sbjct: 25  FARVHTDTRTLQPGDLFVALRGERFDGHEFLASAREAGAVAAIAEHGLSDA--------- 75

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P L V +    L   A+    +    ++AVTG++GK++V   V  I + +   +     
Sbjct: 76  LPGLQVPDALAALQQLAAGWRARFTLPLVAVTGSNGKTTVTQMVAAILRAAHGDAAFATR 135

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +  +       L    P       + +   G+ H    A    +        +      
Sbjct: 136 GNLNNHIGVPLTLLGLEP----AHAAGVVELGMNHPGEIAELAAIA-------RPTIALV 184

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N  R+H ++  T +A      +     LP +  A+  ADD Y+    +       R ++
Sbjct: 185 NNAQREHQEFMATVEAVARENGQAIAM-LPPDGVAVFPADDDYTPLWREL--AGARRTIT 241

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               G      +     ++ +V ++           + G   V NAL AA   +A G+  
Sbjct: 242 FALDGAADLTARATWQGDRWRVEMATPAGPLVTTLAVAGRHNVKNALAAAACALAAGVAP 301

Query: 330 ALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIV 386
           A +   L     V GR +      + G    VD  Y    +S    +  +  +   R +V
Sbjct: 302 AAIAAGLTAFQPVAGRSQAARLATAHGEITLVDDSYNANPDSALAAVAVLAALPGPRWLV 361

Query: 387 V--FGCGGDRDQGKRPIMG 403
           +   G  G+R       +G
Sbjct: 362 LGDMGEVGERGPEFHAEVG 380


>gi|330892871|gb|EGH25532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 101

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 17/113 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M   +L+      L+           +   + VS+DSR IQ G +FVA+ G + DGH ++
Sbjct: 1   MTFSELVVPLDARLVAG---------DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYL 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            Q  A+GA   +V              ++ P LVV +TRK L+   +      
Sbjct: 52  EQVAAKGAVGALVEREVQ--------GASLPQLVVIDTRKALAQLGAMNRNAF 96


>gi|291460928|ref|ZP_06025930.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380013|gb|EFE87531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 613

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 149/414 (35%), Gaps = 43/414 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L +F    ++ ++  V  DSR +  G +F AI     +G+ +I 
Sbjct: 176 NLKDFSEILKREKLNEL-LFEEFSKKVQVKNVVMDSRKVTEGSLFFAI----NNGNSYIK 230

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +         T   +  I+ V +T   +   A++   K    ++ +T
Sbjct: 231 DVLDKGASLVIADN---------TDVVDERIVKVSDTVATMQDLATKYRNKLDIQVIGIT 281

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+S    V  +  +   +    G  +            T               + 
Sbjct: 282 GSNGKTSTKDIVYSLLSKKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 328

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  ++
Sbjct: 329 FVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKED 388

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +            +V K              +     ++         + T+  +    +
Sbjct: 389 TFVCGDDVYLAKLDVNKIGF----------NEENNYRIESYEFSDKGSKFTLDGK----E 434

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   L G+  + N  +A  L   IG+    + E L+ + +   RF+ +    +   I   
Sbjct: 435 YQMSLLGKHNISNTAIAIELAKKIGLGEEEIEEGLKDIKISGMRFQEIRVG-QDIYINDA 493

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y  +  S+   +  +  I + +  I + G   +  + +     ++   L D  I
Sbjct: 494 YNASPTSMMAAIDTLNEIYNDKYKIAILGDMLELGEEEVKYHVEVLNYLLDKKI 547


>gi|254246422|ref|ZP_04939743.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871198|gb|EAY62914.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 468

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 138/411 (33%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                       + VS+DSR +  G +FVA+ G + D H F+          +    A +
Sbjct: 15  GATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAA 66

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P++    TR  L   A     + P  ++AVTG++GK++V   +  I  
Sbjct: 67  ALVAHAPADVAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++     +++           P+ L +  +      +  + +          R
Sbjct: 127 AAVGADARLATAGNLNNDV-------GLPLTLLRLSAAHRLAVIE-IGMNHPGETEVLAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L           N  R+H ++  T +A            LP +  A+  ADDAY+     
Sbjct: 179 LTA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALPPDGVAVFPADDAYAGIWRV 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++    +    + +    +  ++ I              GE    NAL A
Sbjct: 236 AATGNRILDFALHDAERQNDAQ-IVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILK 374
               +  G+  + + + LE    V GR +    +     G  +  D Y    +S+   + 
Sbjct: 295 TAAALGAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 355 VLAAHPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|206561803|ref|YP_002232568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
 gi|198037845|emb|CAR53789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
          Length = 468

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 138/411 (33%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                       + VS+DSR +  G +FVA+ G + D H F+          +    A +
Sbjct: 15  GATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAA 66

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P++    TR  L   A     + P  ++AVTG++GK++V   +  I  
Sbjct: 67  ALVAHAPAGVAMPMIAGGETRAALGALAHGWRMRFPLPVVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++     +++           P+ L +  +      +  + +          R
Sbjct: 127 AAVGADARLATAGNLNNDV-------GLPLTLLRLSAAHRLAVIE-IGMNHPGETEVLAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L           N  R+H ++  T +A            LP +  A+  ADDAY+     
Sbjct: 179 LTA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALPPDGVAVFPADDAYAGIWRV 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++    +    + +    +  ++ I              GE    NAL A
Sbjct: 236 AATGNRILDFALHDAERQNDAQ-IVGRMHGDELAIDTPAGAVTVRLRALGEHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILK 374
               +  G+  + + + LE    V GR +    +     G  +  D Y    +S+   + 
Sbjct: 295 TAAALGAGVALSAIRQGLEAFEPVKGRLQVKPASVGSLAGATVVDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 355 VLAAHPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|118477615|ref|YP_894766.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416840|gb|ABK85259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 258

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 77/196 (39%), Gaps = 17/196 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 16  MNLKKL-----EEVINGGGLHE-SFHHLEIHGVRIDSKNIKEGNVFVPIIRVK-DGHEYV 68

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +++  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 69  KESMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 122

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++V   ++ I   +       G          +  +  R T    + +  +   
Sbjct: 123 TGSNGKTTVKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKG 182

Query: 177 LSSQGVTHVSVEASSH 192
                    +    + 
Sbjct: 183 CRIIERFTWNSFRGNC 198


>gi|261401200|ref|ZP_05987325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208881|gb|EEZ75336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
          Length = 452

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 130/408 (31%), Gaps = 34/408 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            PM    + ++ + +DSR I+ G +F A+ G + D H F+                 +  
Sbjct: 15  LPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVED------------VLAAGA 62

Query: 81  DFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                 R +       L VD+T   L   A          +  +TG+ GK++V   +  +
Sbjct: 63  AAVVVSREDCASLKDALKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKTTVKEMLAAV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +R   +   +      ++           P+ L              + +  +  G   
Sbjct: 123 LRRRFGNDAVLATAGNFNNHI-------GLPLTLL---KLNEKHRYAVIEMGMNHFGELA 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                 K  A    N  R HI                  + L  +  A+I  +DA     
Sbjct: 173 VLTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             +         + G     +H + +       +  +    +    + P+PG   V+NA 
Sbjct: 233 --KTATLNLNTHTFGIDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAA 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            AA L +A G+    V E L+    + GR            I   Y    +S++  +  +
Sbjct: 291 AAAALALAAGLGLNDVAEGLKGFSNIKGRLNVKSGIKGATLIDDTYNANPDSMKAAIDVL 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDN 419
             + + R I V G  G+  + +   M       A     + A    DN
Sbjct: 351 ARMPAPR-IFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDN 397


>gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 613

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 136/385 (35%), Gaps = 42/385 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 176 NLKDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVK 230

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +         T   +  I+ V +T   +   A +   K    ++ +T
Sbjct: 231 DVLDKGASLVIADN---------TDVKDERIIKVSDTIATMQDLAIKYRKKLDIQVVGIT 281

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    V  +      +    G  +            T               + 
Sbjct: 282 GSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 328

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + 
Sbjct: 329 FVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVNKEN 388

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +            +V K   N                        + +     ++GK+++
Sbjct: 389 TFVCGDDKYLAKLDVNKIGFNNSNTYKIE------------SYKFSDKGSKFVLDGKEYE 436

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G+  + N  +A  L   IG+    +   L+++ +   RF+ +        I   
Sbjct: 437 MSL--LGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISNMRFQEIKIG-EDIYINDA 493

Query: 362 YAHTSNSLEMILKNIRTITSGRIIV 386
           Y  +  S++  +  +  I + +  V
Sbjct: 494 YNASPMSMKAAIDTLNEIYNDKYKV 518


>gi|262364614|gb|ACY61171.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis D182038]
          Length = 127

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 54/104 (51%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
             L +  + + +   ER + E++ DSR   AG +FVA+VG++ DG  +IPQAIAQG  AI
Sbjct: 4   RNLRDLFAPWGLDVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAI 63

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           V  +     D S       P++ + N  + LS  A + Y +   
Sbjct: 64  VAEADGVAPDVSVAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGA 107


>gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
          Length = 479

 Score = 96.9 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 6/128 (4%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +   VS D+R ++ G +FVA+   + DGH F+ QA+ +GA A +VS            
Sbjct: 20  DWEATGVSIDTRTLRPGDLFVALSAAR-DGHDFVAQALDKGAAAALVSH-----VPPGVD 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  P+L+VD+ +  L         +    ++A+TG+ GK+S    ++ +    G +   
Sbjct: 74  AARAPLLIVDDVQTALEAMGRAARARTQARVVAITGSVGKTSTKEMLRDVLSSHGRTHAA 133

Query: 147 IGPTSTIS 154
               +   
Sbjct: 134 EASYNNHW 141


>gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
 gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
          Length = 475

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      L++     P    +  +   V  DSR +  G +FVA+ G + DGH F      
Sbjct: 4   LALSQIALLSGGKATP-GAEDALVTGPVVIDSRAVVPGALFVALRGERADGHDF------ 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTS 124
             A A V + A  +           P ++VD+    L   A  +  + P+  ++ VTG++
Sbjct: 57  --AAAAVAAGAAGVLAQRPLDDPALPAVIVDDAVAALGRLAGGVLARLPQVTVVGVTGSA 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S    + Q+ +R G +    G  +               P+ +              
Sbjct: 115 GKTSTKDLIAQVLRRHGPTVAAEGSFNNEIGH----------PLTVL---RADEQTRHLV 161

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A   G   +         G   N+G  H+     ++A   AK  L E  LP +  A
Sbjct: 162 LEMGARGIGHVAYLCRVAPPRIGVVLNVGSAHLGEFGDREAIARAKGELVEA-LPADGAA 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ ADD   + +  R                    + + A    +   ++  G     L 
Sbjct: 221 VLNADDPLVRAMAARTAAEVLTFGRAADADVRAADETLDARGRPRFTLVTPRGSAPVELR 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                        AA    A     A+     +   +   R E          +   Y  
Sbjct: 281 LHGRHAVGNALAAAAVALRAGMAVEAIARALSQAAPLSRWRMEVTERPDGVTVVNDAYNA 340

Query: 365 TSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALD--LADIAIVT 416
              S+   L+ +  +                  G R   +   +G+       A +  V 
Sbjct: 341 NPESMRAALEAVAHMARAAGGRAFAALGEMAELGARSVAEHEKIGQHVARNGYAGLVAV- 399

Query: 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E    +              ++  +   A+    E L  +DV++V  KG
Sbjct: 400 -----GEAAAPLLDGARQAGSWTGECVQVDDVGAAVTALSERLRPRDVVLV--KG 447


>gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11]
          Length = 607

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 141/391 (36%), Gaps = 43/391 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 172 NLKDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVK 226

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +         T   +  ++ V +T   +   A++   K    ++ +T
Sbjct: 227 DVLDKGASLVIADN---------TNIKDKRVVKVTDTIATMQNLATKYRKKLDIQVIGIT 277

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    V  +      +    G  +            T               + 
Sbjct: 278 GSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 324

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E      
Sbjct: 325 FVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEF----- 379

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                   D  +  V       G   ++     +    K      + +     ++GK+++
Sbjct: 380 -------VDKKNTFVCGDDEYLGKLDVNKVGFNENNDYKIENYEFSNKGSKFVLDGKEYE 432

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G+  + N  +A  L   IG+    + + L+++ +   RF+ +        I   
Sbjct: 433 MSL--LGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKIG-EDIYINDA 489

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCG 391
           Y  +  S++  +  +  I + +  I + G  
Sbjct: 490 YNASPMSMKAAIDTLNEIYNDKYKIAILGDM 520


>gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 486

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 159/452 (35%), Gaps = 43/452 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             +S D+R ++   +F AI G+  DGH ++P A A+GA A VV  A++ +     + ++ 
Sbjct: 39  RGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAKGAMAAVVDEAHADR-----LAAHG 93

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+ VV      L         +    ++AVTG+ GK+S    ++ +  + G     +   
Sbjct: 94  PLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKTSTKEALRLVLTQGGSVHASVASY 153

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+              +  +  G     +  ++      T
Sbjct: 154 NNHWGV----------PLTLARMPRDAR---FGIFEIGMNHPGEITPLVGMVRPHVAIIT 200

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVL 268
            +   H++Y +  +A  +AK  +F   L     AII+ D    + + +  R   AG    
Sbjct: 201 TVAPVHLEYFENVEAIADAKAEIFSG-LVPGGVAIIHRDIPQFERLAEAARHSPAGLIAS 259

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              ++     L  +    +   V  S++G+   +    PG     N+L       A G+ 
Sbjct: 260 FGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRHFAENSLAVLLAAKACGVP 319

Query: 329 SALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTIT---SG 382
                  L       GR  + V     G    +D  Y     S+   L+   T+     G
Sbjct: 320 LEDAAAVLAFCAPQAGRGQQLVLEAGDGPFRLIDESYNANPASMRAALEMAGTLPLEGVG 379

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           R I + G     G +       +  I  +     +             +   +   +P  
Sbjct: 380 RRIAILGDMLELGPQAPDLHAQLADILREACFDLVF--------AAGPLMRHLYDALPSG 431

Query: 440 IEKGNRIEA---IRTAIEMLNKQDVLVVAGKG 468
           +    R +A   +      + + D+++V  KG
Sbjct: 432 LRGEWRAKAEDLVPIVGATVQRNDIVLV--KG 461


>gi|320450516|ref|YP_004202612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
 gi|320150685|gb|ADW22063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
          Length = 428

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 147/464 (31%), Gaps = 57/464 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L  +  +  PE + + +   +    + + ++  DSR    G +FVA+ G +  G  ++
Sbjct: 1   MYLHHV-REVTPEWVARATGGRLHPGGKPVRDLHWDSRETTPGSLFVALPGQRVHGREYV 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A A+GA  ++                    + V +T + L      L    P  ++AV
Sbjct: 60  DEARAKGAHLVLSDRPGPAT------------VEVVDTHQALLRLGRALRELFPGQVVAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            G+SGK++                      +    F         +P      L      
Sbjct: 108 GGSSGKTTTKEA-----------------LAQGLGFPAPPGNQNTAPPLARFLLRLDPQA 150

Query: 181 GVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
               V +     G +   L G+ +      T LG +H++   + +     +  L      
Sbjct: 151 PGCVVELGVDRVG-EMAELMGLARPHLAVLTALGEEHLEAFGSLEGVVEEEAGLLSAPQA 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             S                     G  + + G+       + +  + ++ +         
Sbjct: 210 LVSLQAAEVL---------ERFGLGRGLPTYGFGEATFRGENLRLLLHESRFR----YGA 256

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +   P PG      AL A G+   +G++   V E L  L + PGR E       G    
Sbjct: 257 LEVHIPYPGMGPALAALAALGVAEMLGLNPKEVAERLAHLVLPPGRMERR--EKDGVVFL 314

Query: 360 VD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            D Y     S++  L     +  GR  VV G   +  +    +  ++A + A +      
Sbjct: 315 NDAYNANPLSVKAGL-AWLALQPGRKWVVLGEMRELGEEALRLHLEVAQEAARL----GL 369

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            P    P       + G           EA+    E +   D++
Sbjct: 370 KPLYLGPYAKAQASLGG----EAAEGLEEAVGWLKERVQPGDLV 409


>gi|304384057|ref|ZP_07366512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
 gi|304334845|gb|EFM01120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
          Length = 433

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 120/384 (31%), Gaps = 21/384 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R   A  IF A+ G+  +G+ F  +A+  G    VV               +   
Sbjct: 16  ITTDTRDCPADSIFFALHGDTFNGNAFAAKALEAGCAYAVVDEPQYAN------ADDDRY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L+V ++ K L   A     + P  I+ +TGT+GK++    +  +        +  G  + 
Sbjct: 70  LMVPDSLKALQDLARHHRRQMPARIIGITGTNGKTTTKELIAAVLAEKYNVLYTQGNFNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                V  + + A+  G         +   G  TN+
Sbjct: 130 HIGVPKTLLRLKPE-------------HEVGVIEMGANHPGEIACLAGIAEPDCGMITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   + +     K  L++ L  K    +   +D      + +  N          
Sbjct: 177 GKAHLEGFGSFEGVIKTKGELYDFLRTKLKSTVFIDNDNPYLCDISQGLNLVRYGCRPAE 236

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                          + +   S +    D    L G + + N L AA + +   I    +
Sbjct: 237 NLLIEGQAASSTPLLQFRWRHSTDA-WHDVGTQLIGSYNLTNLLAAACVGLYFSIAPEQI 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              L        R +     +    I   Y     S+   L N   +   + + + G   
Sbjct: 296 DHALSHYTPGNNRSQLA-VTAHNRLIIDAYNANPTSMNAALTNFEEMDVPKKMAILGDMK 354

Query: 393 DRDQGKRPIMGKIALDLADIAIVT 416
           +          K+   L    I T
Sbjct: 355 ELGTVSHAEHQKLVDGLRHSTIHT 378


>gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
 gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
          Length = 478

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 93/447 (20%), Positives = 160/447 (35%), Gaps = 31/447 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
            + + V +DSR I  G +FVA+ G + DGH F+  A+  GA A +V +    +   A++ 
Sbjct: 30  VRFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAALKAGAAAAMVDARGFTEFGDASL- 88

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P+LVVD+TR  L   A+    +    ++ VTG++GK++V     +I +         
Sbjct: 89  ---PLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTTVKEMCAEILRAQARRDGAG 145

Query: 148 GPTSTISSFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +    +N +  P   + L         +   +   E +        L G+    
Sbjct: 146 DEAVLATRGNLNNDIGLPLTLLELRDHHRAAVIEMGMNHPGEIA-------YLTGLARPT 198

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            +  N  +               +     + L     A++ ADD ++     R  NAG  
Sbjct: 199 VAIVNNAQRAHLQGLGTLGEVAQEKGAIYQGLGAAGVAVVNADDPHAGYW--RDLNAGRP 256

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++S G         +        Q+ I+      +    +PG     NAL AA  C+A G
Sbjct: 257 IVSFGIDQPADVAGECTLHGLGSQLHIAAPQGRGEVELQVPGLHNASNALGAAAACLAAG 316

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +     LE L       GR +          +   Y    +S+   +  + + T G   +
Sbjct: 317 VVFEAALEGLALYEGTRGRLQRRSGPQGAVILDDSYNANPDSVRAGIDVLAS-TPGHTFL 375

Query: 387 VFGCGGDRDQGK---RPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           V G  G+  Q        +G  A     D           E           G   F   
Sbjct: 376 VLGDMGEVGQTSAQVHDEIGGYAKSKGIDGLY-----ALGEASAIAVRNFGEGAHHF--- 427

Query: 443 GNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            + +EA+  A+   L+   V++V  KG
Sbjct: 428 -DSVEALVAALAPRLDADAVVLV--KG 451


>gi|330443877|ref|YP_004376863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
 gi|328806987|gb|AEB41160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
          Length = 435

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 160/446 (35%), Gaps = 40/446 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +KI+ V+ DSR +Q G +F A+ G   DGH F+  A   GA A V+S  Y   ++     
Sbjct: 12  KKISGVAIDSRQVQPGDLFFALPGKTTDGHNFLQHAAQAGAVAAVISQEYKGDNY----- 66

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                + V++ RK L              I+ ++G+ GK++   F               
Sbjct: 67  -GLEFVRVEDPRKALQEAGLNKGRLFQGKIIGISGSLGKTTTKEFSNVFLSSVYRV---- 121

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                +S  + +++LT P  I +A          +     +      D H L  + ++  
Sbjct: 122 ----FMSPKSYNSQLTVPLSILMADGDEDFLLLEMGVSEPK------DMHNL--LSIVQP 169

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               +      +           +    ++L   S  ++  D  + K++ + + +A    
Sbjct: 170 EVAVITHIATQHTMHFPRGIQEIVEEKRQILQGSSLQLLPKDSPWYKDLCEVSPSAEKFS 229

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S   Q      K + +      VTI    +D       P +    N L++  L   +  
Sbjct: 230 FSFHDQAADFCYKSLDSHG----VTIQTPDEDIYLPIAFPYQPAYANLLISVSLAWLLET 285

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIV 386
               ++  L  L + P RFE    N     I   Y     ++   L+ + + ++ G++I+
Sbjct: 286 PLEHLISSLPDLKLPPMRFEQSLRNGI-HVINDAYNACPEAMLAALEALPSPSNGGKVIL 344

Query: 387 VFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + G     G   +    ++   AL  A +          E    +   ++      +E  
Sbjct: 345 ILGHMAELGVYSEEGHALVATKALSRAHVIFFI-----GEKWSPVL-HMVQHHSCQVEFY 398

Query: 444 NRIEAIRTAIEML-NKQDVLVVAGKG 468
           +    I   ++ L  + DV+++  KG
Sbjct: 399 SAPHDIEMILKDLVQQGDVVLL--KG 422


>gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 470

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 163/458 (35%), Gaps = 37/458 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
                 ++  V++D+R +  G +FVA+ G++ DGH F  QA+ +GA  ++VS   S    
Sbjct: 19  QGEPSARVKRVTTDTRVLAGGELFVALRGSRFDGHDFAGQAVDRGACGLLVSREVS---- 74

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              + S   +L V +T   L   A     +    ++AVTG++GK++    +  +      
Sbjct: 75  ---VPSGVAVLKVADTLTALQALALDNRRRCGLPVIAVTGSTGKTTTKDLLTAVLAARFR 131

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                   +               P+ L           V  + + A        R+   
Sbjct: 132 VLATRENLN----------NEIGLPLTLLDVDPVHEVAVVE-LGMRAPGEIDLLARI--C 178

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +   G  TN+G  H++   +      AK  L  + +P    A+++A+     E  +R   
Sbjct: 179 EPTGGVITNIGETHLELLGSVANIARAKGEL-LDHIPPSGFAVLHAESPGMDEQARRCRG 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              R      +     L    A+ +     +   G D ++  PL G     NAL A  + 
Sbjct: 238 RVVR--FGESESADFRLLDYRALPDGSVFRVRSAGGDEEYYLPLFGRHTALNALAAIAVG 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +G+  + +   LE+      R + +        I   Y  +  S++  L+ +  I +G
Sbjct: 296 LELGLAVSEIRAGLEQARASSLR-QAIVKAGGLTIINDTYNASPASVKAALEVLAEIAAG 354

Query: 383 R-IIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIP 437
           R  + + G     G R       +G          +VT      E    I       G+P
Sbjct: 355 RSTVAILGGMLELGPRSSEAHREVGMACAHAGVGQLVTM----GELAVGIADGAREAGLP 410

Query: 438 GFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
                      E + TA  +  +  V++V  KG     
Sbjct: 411 ASRIWACHTLEETVDTARRLAGENVVILV--KGSRAFQ 446


>gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
 gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
          Length = 436

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 136/444 (30%), Gaps = 37/444 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  +N  + DSR +  G +FV IV  + DGH FI  A+  GA A + S+        A
Sbjct: 15  GDDVAVNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAPAYLTSAGAVDGAAGA 73

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   ++VD+T + L+   +    + P  ++ VTG+ GK+S    +          +
Sbjct: 74  A-------IIVDDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLL----------A 116

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +  T   ++  +        P+ L       +      V +E  + G+    L     
Sbjct: 117 GLLATTFRTAASEKSFNNELGLPLTL-----VNAPDDTEAVVLEMGARGIGHIDLLCSIG 171

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                     + +           A+ +        +    +   D      M    +A 
Sbjct: 172 KPTVGIITRVEGVHLELFGNIEAVARAKGELVEALPDDGIAVLNADHKHVAAMADRTSAR 231

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                +  +        V     +    +     + D      GE QV NAL A      
Sbjct: 232 VITFGLTPESDVHASAVVIDDELRASFRLHSPWGETDIRLAARGEHQVPNALAAVAAAGG 291

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G+      E L    +   R E V +      +   Y     S+   L+++  + +GR 
Sbjct: 292 LGVPLEKFAEGLLGAALSGLRMELVTSERGVTILNDAYNANPTSMSAALQSLAALAAGRR 351

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           I V G   +           IA              R    E I               +
Sbjct: 352 IAVLGTMAELGHDSAWQHEAIASQ-----------ARELGIEVIAVGEPTYGADVRHVAD 400

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
              A    +  L   D ++V  KG
Sbjct: 401 VAAASAE-LSDLGAGDAVLV--KG 421


>gi|198274199|ref|ZP_03206731.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
 gi|198272874|gb|EDY97143.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
          Length = 430

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 135/377 (35%), Gaps = 26/377 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N +++DSRH   G +F+A+ G   +G+ F  Q++AQG    VV       +       N 
Sbjct: 14  NGLTTDSRHCPEGSMFLALKGETFNGNAFAAQSLAQGCRYAVVD------EPQYASPENP 67

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            IL+V+N  + L   A+    K    ++ VTGT+GK++    +  + +      +  G  
Sbjct: 68  YILLVENCLQTLQQLANYHRRKLGTRMVGVTGTNGKTTTKELIAAVLKEKFNVLYTQGNF 127

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +             P                V  + + A+  G  +  +   +   G  T
Sbjct: 128 NNHIGVPLTLLRLKPE-------------HEVAVIEMGANHPGEIKTLVHIAEPDCGIIT 174

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           N+G+ H++   + +     K  L++       +   I  ++ +  ++ +     G   + 
Sbjct: 175 NVGKAHLEGFGSFEGVIRTKGELYDYLREKGNATIFIQNENPHLNKIAE-----GLNCVR 229

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G          V +      +  +  G   +    L G + + NAL A  +    G++ 
Sbjct: 230 YGQTSGLDVSGTVLSCSPFLHLGWTAGGASHEVKTHLIGAYNLDNALAAVAIGRYFGVED 289

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   L        R + V T      I   Y     S+   L N R + +   + + G
Sbjct: 290 TQICHALSSYVPQNNRSQLVQTE-SNTLIVDAYNANPTSMMAALVNFRQMEAEHKVAILG 348

Query: 390 CGGDRDQGKRPIMGKIA 406
              +  +G R    K+ 
Sbjct: 349 DMKELGEGSREEHQKVV 365


>gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
 gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
          Length = 826

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 148/384 (38%), Gaps = 24/384 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +       +E  I+ V +DSR +      +F A+   + DGH +IP+  A+G
Sbjct: 4   TIEKVTTLIGARRYGTKEANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIPELYARG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV     + D   T+ S +  L V  + + L   A R   +    I+ +TG++GK+
Sbjct: 64  VRNFVVE---VVPDNWETLYSGSNFLKVVGSLEALQRLAERHRDEFLIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+     + +         S  + ++++  P  ++L        +  V     
Sbjct: 121 MVKEWLYQLLSPQMVVT--------RSPRSYNSQIGVPLSVWL-----LNENTQVGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+   G FT+LG  H +   + +A    K+ LF      ++     
Sbjct: 168 GISKPGEMMALRDIIQPTIGVFTSLGTAHQENFPSIEAKCKEKLCLFH---DTQAIVYSM 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPL 306
            DD  +  + +  +       S  +     ++K +     +  VT + + GK+  +  P 
Sbjct: 225 DDDVLTHCLAQYNYQGEQLSWSTKHTDATFYIKSIEKKDIETTVTYTWKGGKEAQYKLPF 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA--H 364
             +  V N++  A + + +G+  A + E + +L  V  R E          I   Y   +
Sbjct: 285 IDDASVENSITCAVVALHLGVTQAALAERMAQLEPVAMRLEVKEGQHGCTLINDSYNSDY 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVF 388
            S  + +   N R    GR   + 
Sbjct: 345 NSLDIALDFMNRRPDHKGRKRTLI 368


>gi|153808921|ref|ZP_01961589.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
 gi|149128254|gb|EDM19473.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
          Length = 432

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 128/362 (35%), Gaps = 22/362 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V++DSR+   G +F+A+ G   +G+ F  +A+  G    ++  A    +       +  
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAGKALEDGCAFAIIDEAQYAIEG------DRR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V++  + L   A+    +    ++ +TGT+GK++    +  +  ++    +  G  +
Sbjct: 69  YILVNDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQTHNILYTQGNLN 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  + + A+  G  +   +  +   G  TN
Sbjct: 129 NHIGVPTTLLRLKPE-------------HDLAVIEMGANHQGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K +  I    D  +  +M  A          G
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKGNSTIFIHHD--NPYLMNIAKGLNLISYGSG 233

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       + +   +      G+       L GE+   NAL A  +    G++   
Sbjct: 234 EDLYVNGCITGNSPYLALEWKAEKNGEIHRIRTQLIGEYNFPNALAAITIGRFFGVEDRK 293

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + E L        R +     +    I   Y     S+   L+N R +T    +++ G  
Sbjct: 294 IDEALAGYTPQNNRSQL-KETADNTLIIDAYNANPTSMAAALQNFRNMTVSHKMLILGDM 352

Query: 392 GD 393
            +
Sbjct: 353 RE 354


>gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
 gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
          Length = 452

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 159/453 (35%), Gaps = 41/453 (9%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +   + V +DSR    G +FVA+ G + DGH +          A   ++       
Sbjct: 15  LHGSDVAFSSVGTDSRADCTGQLFVALRGERFDGHEY---------VAAAQAAGAVAAMV 65

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              +  + P  VVD+TR  L   A+    + P  ++A+TG++GK++V   V  I  ++G 
Sbjct: 66  DQPLPLDLPQWVVDDTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVKEMVAAILSQAGR 125

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G  +               P+ L  A           + + A+ HG   +  +  
Sbjct: 126 VRATRGNLN----------NDIGMPLTLLSARDE----DFLVLEMGANHHGEIGYMTEIA 171

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK---- 258
           +      TN GR H++   + +    A        LP++   ++  D  Y     +    
Sbjct: 172 RPEVALITNAGRAHLEGFGSVEGVARA-KGEIARGLPEDGVFVVSGDSPYLGLWRELAEG 230

Query: 259 -RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            R         +    G      +  A   +   T  V  +++     L G+  V NAL 
Sbjct: 231 RRMLTFALDGAADLTAGTESIGVEWGAAGFRTTFTARVADENWPLALSLAGQHNVRNALA 290

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A+   +A+G+D A +   LE L  V GR         G  I   Y    +S+   +  + 
Sbjct: 291 ASAGALALGLDRAAIAAGLESLTPVKGRLYPRLCREIG-VIDDSYNANPDSIAAAIAVLA 349

Query: 378 TITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
            +T  R +V+   G  G         +G+ A       + T     +E            
Sbjct: 350 GLTGRRTLVLGDLGELGADAARLHAEIGEQAHAAGLDRLFTVGTLSAEASRA-FGAGAEH 408

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   NR++A       L   D ++V  KG
Sbjct: 409 FADQDALLNRLKA------DLKPGDRVLV--KG 433


>gi|120404499|ref|YP_954328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957317|gb|ABM14322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 526

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 91/488 (18%), Positives = 156/488 (31%), Gaps = 53/488 (10%)

Query: 11  FPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ- 66
             E++      +         +   V  DSR +  G +F+A+ G + DGH F   A+A  
Sbjct: 9   IAEIVGGRLADVSDEDAARTVVTGTVEFDSRAVTPGGLFLALPGARSDGHDFAATAVAAG 68

Query: 67  ----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
                     G  A+VV       D +A   +      VD +   +    +RL       
Sbjct: 69  AVGVLAARPVGVPAVVVDP--VRPDPAAPGTAGVLEHDVDGSGAAVLAALARLASAVAAE 126

Query: 116 ------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  I+ +TG+SGK+S    +  +    G      G  +            T S  Y
Sbjct: 127 LVAGGLTIIGITGSSGKTSTKDLIAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRSTDY 186

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L   +S      +           L +  +  I        N+G  H+    +++    A
Sbjct: 187 LVLEMSARHPGNI---------AALARIAVPSI----AVVLNVGTAHLGEFGSREVIA-A 232

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                 + +P+    I+ ADD     +  +      RV                    + 
Sbjct: 233 TKSELPQSVPESGVVILNADDPAVAAMADKTAARVVRVGRGAEALDVCADGVSLDALARP 292

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEF 348
             T+     D      + G+ QV NAL AA + +  G     V   L     V   R + 
Sbjct: 293 SFTLHTGAADVPVTLAVHGDHQVSNALCAAAVALECGATPEQVAAALATAGPVSRHRMQV 352

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRP 400
                    I   Y    +S+   LK +  ++      GR   V G     GD    +  
Sbjct: 353 TAREDGVTVINDAYNANPDSMRAGLKALAWMSRGGASKGRSWAVLGEMAELGDDAITEHD 412

Query: 401 IMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEML 456
            +G++A+ L  + + +V    P S     +   ++ G      I   +   A+      L
Sbjct: 413 RIGRLAVRLDVSRLIVVGSGRPMS---AMLHGAVMEGSFGSEAIPVADTDAALEILRAEL 469

Query: 457 NKQDVLVV 464
              DV++V
Sbjct: 470 RPGDVVLV 477


>gi|288929828|ref|ZP_06423671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288328929|gb|EFC67517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 433

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 137/423 (32%), Gaps = 35/423 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V++DSR   AG IF A+ G   +G+ F   A+ QG    VV  A           ++   
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCTFAVVDEA------EFCPPNDERY 69

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+  +   L A          I+ +TGT+GK++    +  +  +     + +G  + 
Sbjct: 70  ILVDDVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGQKYNVLYTLGNFNN 129

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                +      P                V  V + AS  G  +  ++ ++      TN+
Sbjct: 130 DIGVPKTLLRLKPE-------------HEVAVVEMGASHPGDIKTLVELVEPDLALITNV 176

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    + +     K  L++    ++S       DA +  +M  A            
Sbjct: 177 GMAHLQGFGSFEGVVKTKGELYDF--MRQSKRGKVFIDANNPHLMGIAEGLDLVTYGTPA 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-NALVAAGLCIAIGIDSAL 331
           +       KV +     +     EG  ++ +           N L A  + + +G+ +  
Sbjct: 235 RPDLFVSGKVVSAAPFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAALSVGLFLGVSAED 294

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
               L        R +     +    I   Y     S+ + L N   +     + + G  
Sbjct: 295 ANRALANYVPSNNRSQLE-ETAHNKLIMDAYNANPTSMSVALNNFHDMEVPHKMAILGDM 353

Query: 392 GDRDQGKRPIMGKIALDLA----DIAIV-------TDDNPR-SEDPEKIRAEIIHGIPGF 439
            +     +     I   L+    D   +       T    R   + E++ AE+    P  
Sbjct: 354 LELGAVSQSAHQAIVDQLSQLALDEVWLVGSEFARTSCAFRKFNNVEEVIAELKKHRPEN 413

Query: 440 IEK 442
              
Sbjct: 414 HYI 416


>gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310]
 gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310]
          Length = 824

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 169/463 (36%), Gaps = 29/463 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +       +  +I  + +DSR +      +F A+V ++ +GH +IP+   +G 
Sbjct: 5   IEKVTTLIGARRYGTKNAQIGFILTDSRSLCFPEETLFFALVTDRNNGHHYIPELYQRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS   ++      +      L V +TRK L   A R   +    I+ +TG++GK+ 
Sbjct: 65  RNFVVS---AVPVGYDKLYPEANFLKVVDTRKALQRLAERRRDEFDIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+       +         S  + ++++  P  ++L           V      
Sbjct: 122 VKEWLYQLLSPQFYVT--------RSPRSYNSQIGVPLSVWLM-----NEQTQVGVFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G      D I+      TNLG  H +     +     K+ LF +      PA    
Sbjct: 169 ISKPGEMNALRDIIQPTIAVLTNLGDAHQENFGLIEDKCREKLILFHDAETLIYPA---- 224

Query: 249 DDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           DD    +V+      G R   S+  +     +K V        VT   +GK+  +  P  
Sbjct: 225 DDEIISKVITEYDYPGERLYWSMKDKEAPFFVKFVEKKETMTTVTYIYKGKEDWYSLPFI 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH--T 365
            E  V N++V A + + +G+   ++ + +++L  V  R E          I   Y     
Sbjct: 285 DEASVVNSIVCAIVSLHLGVTPDVLDQRMQQLEPVAMRLEVKEGQHGCTLINDSYNSDIN 344

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           S  + +   N R    GR   +     D+   +   + +   +LA    VT        P
Sbjct: 345 SLDIALDFMNRRPDHQGRSRTLVLSDIDQSGREASELYREVSNLAVKRGVTKLI--GIGP 402

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +    +    +            I++ +    + +V+++  KG
Sbjct: 403 QLTEQQDAIKVTQKYFFPTVEAFIKSGVFQALRDEVILL--KG 443


>gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 613

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 135/386 (34%), Gaps = 44/386 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 176 NLKDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVK 230

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +             +  I+ V +T   +   A +   K    ++ +T
Sbjct: 231 DVLDKGASLVIADN---------IDVKDERIIKVSDTIATMQDLAIKYRKKLDIQVVGIT 281

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    V  +      +    G  +            T               + 
Sbjct: 282 GSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 328

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E ++ + 
Sbjct: 329 FVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVIKEN 388

Query: 242 SPAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +      DD Y  ++ + +          +          K      + ++++  +    
Sbjct: 389 TFV--CGDDEYLAKLDVNKIGFNNSNTYKIESYKFSDKGSKFVLDGKEYEMSLLGKHNI- 445

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                        N  +A  L   IG+    +   L+++ +   RF+ +        I  
Sbjct: 446 ------------SNTAIAIELAKKIGLTDEEIENGLKEIKISNMRFQEIKIG-EDIYIND 492

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIV 386
            Y  +  S++  +  +  I + +  V
Sbjct: 493 AYNASPTSMKAAIDTLNEIYNDKYKV 518


>gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 480

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 162/461 (35%), Gaps = 48/461 (10%)

Query: 23  MQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
           +   E+K +  VS DSR ++ G +F+A+   + DGHLF+  A   GA   ++   +  + 
Sbjct: 24  VAAAEKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSDAAKAGAAFAIIERHFEAEF 83

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A+++ + P +VV ++   L L A+    +    ++ +TG+ GK+S  S + ++ Q   
Sbjct: 84  --ASLKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSVGKTSTRSMLYEVLQARY 141

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                       S    +N L  P  I         +      + + A   G D  RL  
Sbjct: 142 S--------GRQSPANFNNTLGLPLSI----LELECTRDEFAVLEMGAGQRG-DIARLCE 188

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I                                 E LP+   A     D ++  +  +AH
Sbjct: 189 IAQPEMGVITSIGLAHLATFGTPLSVAESKAELFESLPENGVAFFPGHDPFALVLKDKAH 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                V         I          +      ++G+D+           V NA +A  +
Sbjct: 249 CRTVTVGEDTVNDWTIQ----QVRAVRDGYRFVMDGQDYFIRT--VARHFVQNAGLAIAV 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +GI +A + + L K   V GR   +   S        Y  + +++   L+ +  +  
Sbjct: 303 GREVGISNAEIADQLAKWQPVSGRCSLIPHPSLTILDDC-YNASPSAMAAALRTLEELGE 361

Query: 382 G---RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
               R I V G     G+  + +   +G++A  L+   I+              A++I  
Sbjct: 362 REETRTIAVLGDMAELGEISEREHRRVGQLAGGLSIDFILAVGQH---------ADLIAK 412

Query: 436 IPGFIEKGNRIEAIRTAIEML--------NKQDVLVVAGKG 468
                       A+   +EM          + DV++V  KG
Sbjct: 413 AAKATNLSLHRLAVARDVEMAWMLLECWIEEGDVILV--KG 451


>gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
 gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
          Length = 478

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 122/348 (35%), Gaps = 28/348 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +QAG +FVA+   + DG  F+  A+ +GA A +VS           +  + 
Sbjct: 24  DGVSIDTRTLQAGDLFVALKDVR-DGQDFVATALEKGAGAALVSR------VPDGVADDA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+VD+  K L    +    +    ++AVTG+ GK+S    +  I    G +   +   
Sbjct: 77  PLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKTSTKEMLLAIFADQGRAHASVDSY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+         +        +H  +   L  +     +  
Sbjct: 137 NNHWGV----------PLTLARMPVDTDYAVIEIGM----NHPGEISPLAILTKPDAAMV 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                         A    +     + L     A+I AD  ++  +M +A +   R +  
Sbjct: 183 TTVAAVHLEAFDDVAGIALEKAAIFDGLEPGGVAVINADIDHAAILMAKAVDRRLRDIEF 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G       LK V    +   V    +G    F    PG     NAL A  +  A+G D A
Sbjct: 243 GENAYHFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGALAVAQAMGADLA 302

Query: 331 LVLEHLEKLHVVPGR-------FEFVGTNSRGGRIYVDYAHTSNSLEM 371
           L    L +     GR        + V T      I   Y     S+  
Sbjct: 303 LAAASLGRWTPYKGRGVREVIHLDSVETRMTLSLIDDSYNANPTSMAA 350


>gi|289804639|ref|ZP_06535268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 132

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+                    R++ E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVA-----------GLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  EN+
Sbjct: 54  QAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENM 109


>gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
 gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
          Length = 485

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 133/442 (30%), Gaps = 59/442 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V   +R +  G +F+A+ G + DGH F   A   GA A++V+     Q          P
Sbjct: 27  DVVIGTRKVTPGALFIALPGTRVDGHDFTQAAQDMGAAAVLVTRRTDAQ---------LP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            LVVD+ +  LS  A  +     +     +AVTG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLVVDDGQAGLSRLARHVVATERERGMRAIAVTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A     +       +     G        +      
Sbjct: 138 S--------FNNEIGVP-----LTACRSNENTSFLVSEMGTRGLGHISWLTSIVTPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A      E L  +  A++ A D     +  R         
Sbjct: 185 VLNVGSAHLGEFGSREIIAQA-KGEIVEALSVDGWAVLNAADTLVAGMAPRTRGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQ-------VYNA 315
                 +     +V A             T++    +  +  P+               A
Sbjct: 244 PDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTMGAYQVANAVAA 303

Query: 316 LVAAGLCIAIGIDSALVLEHL------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA   +A+  D                +     R +          +   Y    +S+
Sbjct: 304 TAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLTAMGH--------VLATRRARDPQTRG-----VAVLGDMLELGQDSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIRT 451
                G    I  G+  + I  
Sbjct: 410 RAAHAGFDVIIAVGDEAKNIAE 431


>gi|255692589|ref|ZP_05416264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621646|gb|EEX44517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 432

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 129/380 (33%), Gaps = 22/380 (5%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    +  +  
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKFALNSGCAYAIID------EGEYAVEGDQR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  +
Sbjct: 69  YILVDNCLQTMQQLANYHRRQLGTKVIGITGTNGKTTTKELISTVLSQAHNVLYTLGNLN 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  + + A+  G  +   +  +   G  TN
Sbjct: 129 NHIGVPTTLLRLKPE-------------HDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  KE+  I    D      M    +        G
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKENSTIFIHHDNPYLMNMSEELDRIYYGTQDG 235

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       + +   +       +       L GE+   NAL A  +    G++   
Sbjct: 236 LYINGRITDN--SPYLAFEWKAGNGNEIHRIQTQLIGEYNFPNALAAITIGHFFGVEMQK 293

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + E L        R +     +    I   Y     S+   L+N R +     +++ G  
Sbjct: 294 IDEALAGYTPQNNRSQL-KQTTDNTLIIDAYNANPTSMMAALQNFRNMAVPHKMLLLGDM 352

Query: 392 GDRDQGKRPIMGKIALDLAD 411
            +          KI   + D
Sbjct: 353 RELGAESNIEHQKIVNYIKD 372


>gi|288919049|ref|ZP_06413390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
 gi|288349589|gb|EFC83825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
          Length = 510

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 131/443 (29%), Gaps = 26/443 (5%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            +  V  DSR +  G +FVA+ G + DGH F              +         A    
Sbjct: 28  PVTSVVIDSRQVAPGSLFVALPGERVDGHDFAA-----------AAVGAGALAVLAARPV 76

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P ++V +    L+  A+ +  ++   ++ VTG++GK++    +  +    G +    G
Sbjct: 77  GVPAVIVTDPAVGLAALAATVRDRYTATVIGVTGSAGKTTTKDLLADLLGGHGEAGGPGG 136

Query: 149 PTSTISSFA-QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             +T+++    +N +  P        L          + + A   G         +   G
Sbjct: 137 LGATVAAIGSFNNEIGLP-----LTMLRAEPETRFVVLEMGARGIGHIATLCALARPQVG 191

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+  +   +           E        ++ ADD     +  R   +   V
Sbjct: 192 LVLNVGSAHVGEYADGRRGIAVAKGELAEAA--SELVVLNADDPLVASMAARVQASAKVV 249

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAI 325
           L        +  +++      +     +   +   L                AA      
Sbjct: 250 LFGTGASADVRAERIEVDAAGRAAFDLLASGECHRLRLGLVGAHQVANALAAAAAAIGLG 309

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
              +               R E   T      +   Y     S+   L  +  I   GR 
Sbjct: 310 LAPADAAAALERARPRSRWRMEVTTTPGGVVVLNDAYNANPESMRAALAALLDIRGDGRA 369

Query: 385 IVVFGCGGDRDQG---KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
             V G  G+   G       +G++   L  +  +    P +    +   E +        
Sbjct: 370 WAVLGPMGELGAGAAEAHRELGRLVASLG-VPRLVAVGPGALGVHEAAREDVAWAGESTW 428

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464
                EA+      +   DV++V
Sbjct: 429 VSGVDEAVAFLGGQVRPGDVVLV 451


>gi|581175|emb|CAA39334.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli]
          Length = 124

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 11/115 (9%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+DL+    P+              R + E++ DSR   AG +FVA+VG++ DG  +IP
Sbjct: 5   NLRDLLAPWVPD-----------APSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIP 53

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           QAIAQG  AI+  +     D         P++ +    + LS  A R Y +  +N
Sbjct: 54  QAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDN 108


>gi|149278412|ref|ZP_01884549.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
 gi|149230782|gb|EDM36164.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
          Length = 824

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 131/381 (34%), Gaps = 23/381 (6%)

Query: 30  INEVSSDSRH-IQA-GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I+ +  DSR  I     +F A+   K DGH +IP A A G    V+S    L D  A   
Sbjct: 28  ISRLVIDSRSMIDPENSLFFALS-AKRDGHEYIPDAYAHGIRNFVISRTEFLADQKAGDY 86

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++   L+VD+  K L   A     ++   ++A+TG++GK+ V  ++ Q+           
Sbjct: 87  ADANFLLVDDVLKALQELAVFNRRQYDTPVMAITGSNGKTIVKEWLYQLLAADFNIVRSP 146

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              ++           T     LA   + +             S G +   L  I     
Sbjct: 147 RSFNSQIGVPLSVWDLTEE-HTLAIFEAGI-------------SKGEEMDALAAIIYPTV 192

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
                  +      + Q     +     +       +       Y++ + K+      + 
Sbjct: 193 GILTNVGEAHAEGFSSQKEKLLEKLKLFKEADVFIYSP-----EYTQGIPKKDLPGNTKF 247

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +   + +  +  I +K  +    +G++ + L P      V N ++     +++G 
Sbjct: 248 SWSLTESADLQISFIEPIDDKNYIRAIFKGEEIECLIPFSDRASVENGIICWATLLSMGY 307

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIV 386
                   LEKL+ V  R E     ++   I   Y+   +SL + L  +       +  +
Sbjct: 308 SPEDADSRLEKLNRVGMRLELKHGINQCSVIDDSYSADISSLAIALDFLNLQNQHPKKTL 367

Query: 387 VFGCGGDRDQGKRPIMGKIAL 407
           +     +  +    +  +IA 
Sbjct: 368 ILSDLYETGRKDEELYTEIAA 388


>gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
 gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
          Length = 611

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 141/391 (36%), Gaps = 43/391 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 176 NLKDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVK 230

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +         T   +  ++ V +T   +   A++   K    ++ +T
Sbjct: 231 DVLDKGASLVIADN---------TNIKDKRVVKVIDTIATMQDLATKYRKKLDIQVIGIT 281

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    V  +      +    G  +            T               + 
Sbjct: 282 GSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 328

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E      
Sbjct: 329 FVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEF----- 383

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                   D  +  V       G   ++     +    K      + +     ++GK+++
Sbjct: 384 -------VDKKNTFVCGDDEYLGKLDVNKVGFNENNDYKIESYEFSNKGSKFVLDGKEYE 436

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G+  + N  +A  L   IG+    + + L+++ +   RF+ +        I   
Sbjct: 437 MSL--LGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKIG-EDIYINDA 493

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCG 391
           Y  +  S++  +  +  I + +  I + G  
Sbjct: 494 YNASPMSMKAAIDTLNEIYNDKYKIAILGDM 524


>gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 479

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 86/467 (18%), Positives = 156/467 (33%), Gaps = 41/467 (8%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
              +   P       I  +S DSR +  G  + AI G   DGH F+  A+  GA   VV 
Sbjct: 13  AEAMRATPSGALPDAIFGISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALNAGAGLAVVE 72

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A   +       ++ P+L+VD+    L   +     +    ++A+TG+ GK+S    ++
Sbjct: 73  RAQRDK-----FPADAPLLLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTSTKEALR 127

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +    G +   +   +               P+ LA+  +           +  +  G 
Sbjct: 128 AVFGAQGETHASVASFNNHWGV----------PLSLARCPASAK---FAVFEIGMNHPGE 174

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
            Q  +  ++      T +   H+++  + +A  +AK  +F   L      ++  D+    
Sbjct: 175 IQPLVALVRPHVAIITTVEPVHLEFFDSVEAIADAKAEIFTG-LEPNGAVVLNRDNPQFA 233

Query: 255 EVMKRAHNAGCRVL--SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + KRA   G   +      +     L  +        V  +V G+D  +   +PG    
Sbjct: 234 RLRKRAKAHGISRIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGIPGRHMA 293

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSL 369
            N+L        +G D AL    L ++    GR        + G    +D  Y     S+
Sbjct: 294 INSLAVLAAAELVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPASM 353

Query: 370 EMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRS 422
              +  +        GR I V G     G R       + +     A D         R 
Sbjct: 354 AAAINVLGQAAVGPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDTVFCCGPLMRQ 413

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
                   + +          +   A+    I  +   DV++V  KG
Sbjct: 414 ------LWDALSTGKRGGYAED-AAALESQVIAAIRGGDVIMV--KG 451


>gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
 gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
          Length = 607

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 140/392 (35%), Gaps = 45/392 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 172 NLKDFSEILKREKLNEL-IFEEFLKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVK 226

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +         T   +  ++ V +T   +   A++   K    ++ +T
Sbjct: 227 DVLDKGASLVIADN---------TDIKDKRVIKVTDTIATMQDLATKYRNKLDIQVVGIT 277

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    V  +      +    G  +            T               + 
Sbjct: 278 GSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 324

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + 
Sbjct: 325 FVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKEN 384

Query: 242 SPAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +      DD Y  ++ + +    G     +          K      + ++++  +    
Sbjct: 385 TFV--CGDDEYLGKLDVNKVGFNGNNTHKIESYDFSNKGSKFILDGKEYEMSLLGKHNI- 441

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                        N  +A  L   IG+    + + L+++ +   RF+ +        I  
Sbjct: 442 ------------SNTSIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKIG-NDIYIND 488

Query: 361 DYAHTSNSLEMILKNIRTITSGRI-IVVFGCG 391
            Y  +  S++  +  +  I + +  I + G  
Sbjct: 489 AYNASPMSMKAAIDTLNEIYNDKYKIAILGDM 520


>gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
          Length = 607

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 140/392 (35%), Gaps = 45/392 (11%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 172 NLKDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVK 226

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  ++  +         T   +  ++ V +T   +   A++   K    ++ +T
Sbjct: 227 DVLDKGASLVIADN---------TDIKDKRVIKVTDTIATMQDLATKYRNKLDIQVVGIT 277

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    V  +      +    G  +            T               + 
Sbjct: 278 GSNGKTTTKDIVYSLLSVKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 324

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + 
Sbjct: 325 FVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVDKEN 384

Query: 242 SPAIIYADDAYSKEV-MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +      DD Y  ++ + +    G     +          K      + ++++  +    
Sbjct: 385 TFV--CGDDEYLGKLDVNKIGFNGNNTHKIKSYDFSNKGSKFILDGKEYEMSLLGKHNI- 441

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                        N  +A  L   IG+    + + L+++ +   RF+ +        I  
Sbjct: 442 ------------SNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKIG-NDIYIND 488

Query: 361 DYAHTSNSLEMILKNIRTITSGRI-IVVFGCG 391
            Y  +  S++  +  +  I + +  I + G  
Sbjct: 489 AYNASPMSMKAAIDTLNEIYNDKYKIAILGDM 520


>gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
 gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
          Length = 823

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 133/365 (36%), Gaps = 24/365 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                E+++ +    +  R+  I+ + +DSR +      +F A+   + DGH +IP+  A
Sbjct: 2   SSSIEEIVSVVGATRIGERQASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYA 61

Query: 66  QGA-EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           +G    +V      +++      ++   LVV N  K L   A +   ++   ++ +TG++
Sbjct: 62  RGVYNFVVAEVPEEMKNC-----TDVNFLVVGNVLKALQRLAGKHREQYQVPVIGITGSN 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+ V  ++ Q+                 S  + ++++  P  +             +  
Sbjct: 117 GKTVVKEWLYQLLSPDKRI--------IRSPRSYNSQIGVPLSV-----WMMDEHTELGI 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S  G  +     I+   G  TN+G  H +   + Q     K+ LF+     +   
Sbjct: 164 FEAGISEMGEMETLEPIIRPTIGVLTNIGGAHQENFSSLQDKCMEKLLLFK---ECDVIV 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               ++     V K    A     S+    + + ++K+        +     G   +F  
Sbjct: 221 YNGDNELIRDCVSKSLFTAREIAWSMKDPERPLFIEKIEKDAAGTTIKYRYLGFFKEFRI 280

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P   +  + N+L    + + + + + ++ E +  L  V  R E     +    I   Y  
Sbjct: 281 PYIDDASIENSLHCLAVALYLMVPTEVIAERMAHLEPVAMRLEVKEGKNGCVLINDSYNS 340

Query: 365 TSNSL 369
              SL
Sbjct: 341 DFASL 345


>gi|134302121|ref|YP_001122090.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049898|gb|ABO46969.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 940

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGVNTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   G+ I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGKKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|83312943|ref|YP_423207.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
 gi|82947784|dbj|BAE52648.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 470

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/454 (16%), Positives = 139/454 (30%), Gaps = 50/454 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS DSR I+ G +F+A+ G   DGH  +  A+A GA A +V               + P
Sbjct: 28  GVSIDSRSIEPGDLFIALEGPNHDGHDHVASALANGAAAALVHK------LPRGTAEDAP 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +++V +T   L         +    I+AVTG+ GK+     +       G + + +G  +
Sbjct: 82  LVLVKDTMTALQDLGIASRARSTARIVAVTGSVGKTGTKEMLALALSDQGATHYSVGSFN 141

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ LA      ++       +  +  G     +  ++      T 
Sbjct: 142 NHWGV----------PLSLA---RMPTAVQYAIFEIGMNHPGEITPLVRMVRPHVAVITT 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFE-ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           +   H+++  +      AK  +F+       +                R           
Sbjct: 189 VEMVHMEFFASTAEIAAAKAEIFDGVETGGTAVLPRDNAHFAYLNDAARTAGLKDIRSFG 248

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
            +      L           V   V  +   +   + G     N+L       A+G D  
Sbjct: 249 NHIEATARLLDCAVDPQSTAVFALVADQPLSYRVGVAGRQWAMNSLAVLLAVEALGADVN 308

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVDYAHT-----SNSLEMILKNIRTITSGRI 384
           L    L  +    GR +        G    +D ++        +   +L ++R    GR 
Sbjct: 309 LAAMALAAMAAPKGRGQRRRIEIEGGSFELIDESYNASPVSMKAAIAMLASVRPAKGGRR 368

Query: 385 IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           I V G     G +       + +         + T               +   +   + 
Sbjct: 369 IAVLGDMLELGPQGPSLHASVAETVESWNIDLVFT------------AGTLTAHLHDALA 416

Query: 442 KGNR------IEAIRTAIEM-LNKQDVLVVAGKG 468
              R       +A+   ++  +   DV++V  KG
Sbjct: 417 APRRGGHAADSDAVAALVKAGVRPGDVVMV--KG 448


>gi|220925312|ref|YP_002500614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
 gi|219949919|gb|ACL60311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
          Length = 494

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 87/452 (19%), Positives = 154/452 (34%), Gaps = 32/452 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + +  +S D+R ++ G +F AI G   DGH F+  A+A+GA A VVS A + +   +   
Sbjct: 34  QPVAGLSIDTRTLKVGDLFFAIRGETRDGHDFVRDALARGAGAAVVSQARAAELAGSGPL 93

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P    D     +   A+    +    +LAVTG+ GK+     ++ +    G +   +
Sbjct: 94  VVVPEAGDDPVLAAMRALAAAARARSAARVLAVTGSVGKTGTKEALRHVLAAQGTTHASV 153

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ L +  +  +          A        RL  ++    
Sbjct: 154 ASYNNHWGV----------PLTLGRMPAGSAFGVFEIGMNHAGEIA-PLARL--VRPEIA 200

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGC 265
             T +   HI++ ++     +A        L     AI+  D+ + + +     A  AG 
Sbjct: 201 IVTTVEPVHIEHFRSLSGIADA-KGEIFCGLEPGGIAILNRDNPHFERLSAHALASRAGR 259

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V    +    +  +++    +   V  SV G    +    PG     N+L       A+
Sbjct: 260 IVSFGEHPQADVRAERIVMRPDLSIVDASVLGVPVTYQLGTPGRHTALNSLAVMAAVHAL 319

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVD--YAHTSNSLEMILKNIRTIT-- 380
           G D AL    L +LH   GR E        G  + VD  Y     S+   L  +  I   
Sbjct: 320 GADLALAALSLAQLHPPVGRGERTLLRLREGEALLVDESYNANPASVRAALATLAGIEIR 379

Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             GR I V G     G         +           +            ++   +  G 
Sbjct: 380 GQGRRIAVLGDMLELGSEAPRLHRELAASVEQHGIDLVFAA----GPMMAELFESLPAGT 435

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G     +  E +   +  +   D +++  KG
Sbjct: 436 RGVAAPTS-AELLDAVLSEIRPGDAVMI--KG 464


>gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 488

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 150/451 (33%), Gaps = 39/451 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR + AG +F+A+ G + DGH  +  A+  GA A +VS   +            
Sbjct: 37  TGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSRIPAGIATDR------ 90

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            +LVV++T + L   A     +    ++ VTG+ GK+     + Q   R G      G  
Sbjct: 91  -LLVVEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNL 149

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  +      +  + +  +  G         +      T
Sbjct: 150 NNHF----------GLPLTLARMPAD---TDLAVIELGMNHPGELGPLARLARPHVAIIT 196

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+   H+++  + +A  +AK  + E + P  +  +   +  + +     A     + LS 
Sbjct: 197 NVAAVHLEFFDSVEAIADAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSF 256

Query: 271 GYQ---GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G        +    V A        I  +   +               ++A    + + I
Sbjct: 257 GNHIGADARVLDCAVDANGTAVFALIGDDPLAYRMAVEGRHWALNSLGVLAVVRALGLDI 316

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-----LEMILKNIRTITSG 382
            SA             GR + V     G    +D A+ ++          L   R    G
Sbjct: 317 HSAANGLANVVPPRGRGRRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRG 376

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           R I V G     G +       + KI+++     + T              + +      
Sbjct: 377 RRIAVLGDMLELGPQAAKLHADLAKISVERGIDLVYTAG-----PLMAHLHDALPASRRG 431

Query: 440 IEKGNRIEAIR-TAIEMLNKQDVLVVAG-KG 468
               +  +A+    +  L   DV++V G KG
Sbjct: 432 GHAPD-ADALTPLVLAALRPGDVVMVKGSKG 461


>gi|208779767|ref|ZP_03247111.1| cyanophycin synthetase [Francisella novicida FTG]
 gi|208744222|gb|EDZ90522.1| cyanophycin synthetase [Francisella novicida FTG]
          Length = 940

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   GR I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGRKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
 gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
          Length = 466

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 156/442 (35%), Gaps = 29/442 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSR I  G +FVA+ G   DGH F+ +A+  GA A +V   ++         +   
Sbjct: 28  GVCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAALVERGFN------PTAAGQC 81

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L VD+T K L   A+      P  I+AVTG++GK+S    + Q+  +        G  +
Sbjct: 82  LLRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQVLGQRFEVHKTKGNLN 141

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L    +      V    +  ++ G   +     +      TN
Sbjct: 142 NH----------IGLPLTLL---ALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAVITN 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H+    + +A   AK  LF+  L  E+ A +  DD        +            
Sbjct: 189 VGPAHLGPLGSIEAVAAAKAELFQA-LGPEAVAAVNLDDPLLAPWADKLPCRVITFGLDP 247

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                              + I  +  +       PG   V NAL AA +   +G+++  
Sbjct: 248 KAQARARDVSAFGSRQAFTMEIGDQPAE-RVRLAAPGLHNVRNALAAAAVGAGLGLEAWQ 306

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFG 389
           + + +E      GR E V T      I   Y     S+   L+++  +        ++ G
Sbjct: 307 IKDGVEAFTPTKGRLENVFTKGGPLLIDDTYNANPASVAAGLQSLAALSKWGKGHGLIMG 366

Query: 390 CGGDRDQGK---RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
             G+           +G+ A++     ++       E     R   +   P  +      
Sbjct: 367 DMGELGPEAPRLHRQVGRQAVEFGCKFVLAVGQMADEVVAGAREAGLA-APKALAFAEVD 425

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           + I  +  ++ +   ++V  KG
Sbjct: 426 QLIDASPRVIGEGWTVLV--KG 445


>gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
 gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
          Length = 461

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 137/392 (34%), Gaps = 32/392 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L +L  K    L            + ++  V++DSR+   G +F+A+ G K D H F+ +
Sbjct: 6   LSELARKAQGTL---------SGEDIEVASVTTDSRNCPPGSLFIALKGEKFDAHDFLEK 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+  GA A+ VS   +          + P +   +T + L L    +  K P  I AVTG
Sbjct: 57  AVLSGAAALGVSLGGNF---------SVPCVKCADTLRLLGLAGLLVREKCPAKIGAVTG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK++V      I ++   +    G  +               P+ L +    L    +
Sbjct: 108 SCGKTTVKEMAYSILKQGFNAMCTNGNFN----------NDVGVPLTLLRLDEKLDYAII 157

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              +            +     +  +      +            +  +           
Sbjct: 158 EQGASHKEDIKRTSEFVQADAAVITNVGQAHIEGFGSAYGVYKGKSEILDSVLARGGIGI 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                      K+  K A   G  +        F+ + +V +   +    ++ +G+    
Sbjct: 218 VPSCSQWIDEWKKDYKEAFLQGKMLTFGYNDDDFVKVSEVKSSSQEVSFILTAKGQSEQI 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD- 361
              L G+    NA  AA LC+A+G D   +   LE    V GR +    N  G  +  D 
Sbjct: 278 KLNLLGKHNAQNAAAAAALCLALGCDFKYIKPGLENTSSVKGRLQVK--NFAGFTLIDDA 335

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           Y  + N++   +  + +    + ++VFG  G+
Sbjct: 336 YNASFNAVLSGIDTLSSFAGFK-VMVFGDMGE 366


>gi|332678416|gb|AEE87545.1| Cyanophycin synthase [Francisella cf. novicida Fx1]
          Length = 940

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   GR I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGRKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|118497702|ref|YP_898752.1| cyanophycin synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323674|ref|ZP_03057450.1| cyanophycin synthetase [Francisella tularensis subsp. novicida FTE]
 gi|118423608|gb|ABK89998.1| cyanophycin synthetase [Francisella novicida U112]
 gi|194322038|gb|EDX19520.1| cyanophycin synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 940

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   GR I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGRKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
 gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
          Length = 844

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 151/463 (32%), Gaps = 32/463 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           D  +L+            R+ +  S DSR   AG +F+A+   + DGH +I  A+A GA 
Sbjct: 3   DLDDLLAAGGRLASPVYARQFSGFSYDSRLTAAGELFLALRTPRGDGHAYIADALAAGAT 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++               SNT ++V D+     + +A+    +    ++ VTG+ GK+S 
Sbjct: 63  GVICEK-------PPADLSNTTMIVTDDPALLAARWAAARLRQVAPRVIGVTGSVGKTSA 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +          +  +   +      +        P+ LA+         + +     
Sbjct: 116 TRAI----------AAVLSGLAPTFRSRRSFNSLIGLPVSLARLQDDHRFAVLEYG---- 161

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +++  + HRL  +     +                A    +       LP +  A++  D
Sbjct: 162 TAYPGELHRLTALFPPHVAVVTSAAPMRLSAFGSVADLVREYGALVAALPVDGWAVVNGD 221

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +            +           +        ++ +   G+  D + PL GE
Sbjct: 222 DPALAGLCDTTRARVLTFGTGASCDLRGEAPQYALNG--TRMRVCYRGESVDTVIPLIGE 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V  AL A G+ +  G+      E L  +    GR       S    I        +++
Sbjct: 280 PAVGAALAAVGVALVCGMTLERAAERLALVEPPAGRLRPHLARSSAIVIDDTVGAEPSAM 339

Query: 370 EMILKNIRTITSGRIIVVFGC------GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              L+ +  + + R I V G                  +G++A   AD+ I   D     
Sbjct: 340 LAALRTLAILPAQRRIAVLGDLPADSSIPGEQNDTYAAIGRLAARTADLLIWKGD--AGT 397

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +    +  G+   +       A+      L   D+++V G
Sbjct: 398 HVMRAVQRVRTGMSATL-VHTIAGALEALPPDLGAGDLVLVCG 439


>gi|254374520|ref|ZP_04990001.1| cyanophycin synthetase [Francisella novicida GA99-3548]
 gi|151572239|gb|EDN37893.1| cyanophycin synthetase [Francisella novicida GA99-3548]
          Length = 940

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   GR I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGRKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|307824827|ref|ZP_07655050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
 gi|307734185|gb|EFO05039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
          Length = 519

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 94/530 (17%), Positives = 175/530 (33%), Gaps = 94/530 (17%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L ++      +L+ +         +  I+ VS D+R I+ G ++VAI G+  DG+ F+
Sbjct: 3   MMLSEIAACVQGKLVGE---------DVAISSVSIDTRAIKPGQLYVAIKGHNFDGNEFV 53

Query: 61  PQAIAQGAEAIVV------------------SSAYSLQDFSATIRSNTPILVVDNTRKF- 101
            +A   GA A +V                  SSA+       ++  +T     D+ +   
Sbjct: 54  AEAEQAGAVAAIVHQGITATAIDGGHDCSRQSSAFPPSMEVRSVAISTTAWKQDDCKDAG 113

Query: 102 --------------------------------------LSLFASRLYGKHPENILAVTGT 123
                                                 L+  A     K   +++ +TG+
Sbjct: 114 GRATQGAVAEVEQRMEQLPRELMRPTIPHIVVDDTRLALAELAGVWRKKAAVSVVGITGS 173

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V   V  I   +  + F  G  +               P+ L             
Sbjct: 174 NGKTTVKEMVAAILSVNADTLFTQGNLN----------NDIGVPLTLL---RLNEQHRYA 220

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+  G  ++     +      TN+G  HI+   +      A      + L ++  
Sbjct: 221 VIEMGANHPGEIEYTSQYAQADVAIITNVGAAHIEGFGSIDGVAKA-KGEIIQTLKQDGV 279

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDF 300
           A++  DDAY       A         +  +          ++          +     + 
Sbjct: 280 AVLNRDDAYFDYWKSIAGTRKVISFGIDERADVTAHSVKTEIINHAFATTFELVTAKGEL 339

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   V NAL AA  C+A+  D   + + LE +  V GR + + +      I  
Sbjct: 340 TVKLKLAGRHNVVNALAAATACLALDTDLQQIKQGLESVKPVTGRLQPLVSRLGNIVIDD 399

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            Y   S SL+  L  +      R +V+  FG  G         MG++    + +  +   
Sbjct: 400 TYNANSASLKAGLDVLANCDGKRWLVLGAFGELGPDSPKIHEQMGELI-KSSGVVRLLAV 458

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              + +  KI  E   G   F  + +    I    + L   + +++  KG
Sbjct: 459 GSDAGNTVKIFGE---GATFFDTQNDL---IEMLKQELKGDEAILI--KG 500


>gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 465

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 157/483 (32%), Gaps = 43/483 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L+        EL            +    +  + +DSR +  G  FV +VG   +GH 
Sbjct: 1   MRLR---LGQLIELWGAPMHVHASDLDLDQAVGPICTDSRQLSEGSFFVPLVGEHFNGHA 57

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+ QA+   A+A VV+           +    P  +V++T +           +    ++
Sbjct: 58  FLAQALKLEAQAAVVARKDHHP-----VPEGLPHWIVEDTLEAYQQLGLLHRRQLNVPVV 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    ++      G      G  +               P+ L +A S   
Sbjct: 113 AVTGSAGKTTTRELIRSALTPLGEVLASAGNNN----------NDVGVPLTLLQAHSD-- 160

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G   V +     G  +      +      TN+G  H+    ++ A  +AK  +   L 
Sbjct: 161 -HGAVVVEMGMRGIGEIERLSCCTQPDVAVITNIGNAHVGRLGSRAAIASAKCEITTCLK 219

Query: 239 PKESPAIIYAD----DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           P+    I   D    DA  +    R      +        +   L +           + 
Sbjct: 220 PRGVIVIPAGDSLLEDALERIWRGRVIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVD 279

Query: 295 VEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +   +       +  PL G     N ++A  +   + + +  +      +     R   V
Sbjct: 280 LAKGELLLEGKAYTLPLEGMHNACNLMLALAVARELDVCNESLSNLKVDVPGGRSRRLKV 339

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  +        Y  +  +++  L+ +  I  GR   V G   +       +  ++A   
Sbjct: 340 GNFTVLDET---YNASPEAVQAALE-LLAIQPGRHFAVLGTMLELGDQSVALHRQVAER- 394

Query: 410 ADIAIVTDDN---PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-A 465
                +  D      +    +  A     +P      N  +A +     L   DV+++ A
Sbjct: 395 --AVQIGLDGLVVVAAGAEAEAMATAAESLPHLAVVANPEQAAQPLQAWLEAGDVVLLKA 452

Query: 466 GKG 468
            +G
Sbjct: 453 SRG 455


>gi|213647637|ref|ZP_03377690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 90

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +I     ++ + L     +  +  ++ V +D+R +  G +FVA+ G + D H F  +A A
Sbjct: 1   MISVTLSKIADVLGA-EHRGADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKAKA 59

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
            GA A++VS    +         + P ++V +TR+     
Sbjct: 60  NGAGALLVSRPLDI---------DLPQVIVKDTRQAFGQL 90


>gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|315022146|gb|EFT35175.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Riemerella anatipestifer RA-YM]
          Length = 814

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 126/387 (32%), Gaps = 27/387 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++        +   ++ I   + DSR I       FVAI   K +G  +I  A+ +G
Sbjct: 4   TARQIAEITGAKLIGAGDKIIKHFAFDSRIIYSPKNTGFVAIKTKKNNGEKYIASAVEKG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            E IV                +   L+VD+T KFL   A      H    + +TG++GK+
Sbjct: 64  IELIVSEHK-------TLDNEHLSWLIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKT 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q               ++            P                V    V
Sbjct: 117 IVKEWLYQCLSEDIRCVKSPKSFNSQIGLPLSLLNIKPE-------------HKVGIFEV 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S                G  T++G  HI   ++++   + K       L K+S +II+
Sbjct: 164 GISEPNEMTTLETIFSPKIGVLTHIGSAHISNFKSEKHLVDEK-----ISLFKDSESIIF 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D            +   ++S G+               +Q +T+    K F F     
Sbjct: 219 NGDNILVSNKINTLYSSKNLISYGFNKDNNIHISSNWKDRQQPITVQCFDKSFSFPAQQR 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            E  + N L    +   +   +  ++E +  L  V  R E V        I   +    +
Sbjct: 279 DEATLSNVLAIIAVMHLLEFSTEKMIEKINNLKAVEMRLESVNGIKNNLIINDSFNLDLD 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDR 394
           SL++  + I++    +  ++     ++
Sbjct: 339 SLKIAFEFIKSYQKPKKSLIITDFTEK 365


>gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
 gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
          Length = 439

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              ++   L +       R +   ++DSR I    +++ I G + DGH FI  A+AQGA 
Sbjct: 3   TIAQIAQWLGLEETDT--RALRNFATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQGAI 60

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +      L +       +  +L V++  + L + A R   +    ++A+TG++GK+S 
Sbjct: 61  ATLWKKGIPLPEM------DITVLEVEDPLQALQIIAKRYLQQVAPKVIAITGSNGKTST 114

Query: 130 ASFVQQICQRSGLSSFQIGPTS 151
              ++ + ++S  +    G  +
Sbjct: 115 KDMIESVLKQSFRTHKTAGNFN 136


>gi|294674906|ref|YP_003575522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
 gi|294471729|gb|ADE81118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
          Length = 478

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 140/434 (32%), Gaps = 46/434 (10%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++DSR    G IF+A+ G   +G+ F  QA+ +G    +V    +         ++  I
Sbjct: 51  ITTDSRDCPEGSIFLALKGESFNGNKFALQALEKGCAYAIVDEDVA---------NDPRI 101

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + VDN  +     A     +    ++ +TGT+GK++    +  +  +     +  G  + 
Sbjct: 102 IKVDNCLQTFKDLAREHRRQFDIPVIGITGTNGKTTTKELIAAVLSQKYNVLYTQGNFN- 160

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P  L           +  + + AS  G  +   +  +   G  TN+
Sbjct: 161 ---------NDVGVPKTLF---RLNKEHEIAVIEMGASHPGDIKTLAETAEPTCGLITNV 208

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS--KEVMKRAHNAGCRVLSV 270
           GR H+    + +     K  L++ L  +E   I    D      ++            + 
Sbjct: 209 GRAHLQGFGSFEGVIKTKCELYDFLRSREDSLIFINADNEHLIDQISDDEEMWLSPYSTD 268

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVE----------GKDFDFLFPLPGEFQVYNALVAAG 320
                     +V   +   +                 K       L G + + N L A  
Sbjct: 269 PDNQYSCISGEVLECNPFLKFRWREPLMVLEEEGRSTKWHKVQTKLIGSYNIDNLLAAIA 328

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + I  G+D   ++  LE       R + +    +   I   Y    +S++  L+N + + 
Sbjct: 329 VGINFGVDRKKIVAALEAYEPSNNRSQ-MTVTEKNHLIVDAYNANPSSMQAALENFKIMQ 387

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV---TDDNPRSEDPEKIRAEIIHGIP 437
           +   + + G            +G+++ +     +    T D        +   +      
Sbjct: 388 ADNKMAILGAM--------RELGEVSAEEHQHVVDYLKTSDIKTVWLVGEEFEDTQCDFR 439

Query: 438 GFIEKGNRIEAIRT 451
            F +      AI  
Sbjct: 440 KFKDVEEVKAAIAA 453


>gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21]
 gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21]
          Length = 820

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/383 (16%), Positives = 140/383 (36%), Gaps = 28/383 (7%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +N ++ DSR I      +F A+ G + DGH ++ +A   G    VV      +  + T  
Sbjct: 28  VNTLAYDSRKITDAKHALFFALPG-RRDGHQYVQEAYRAGVRNFVV----RPEAVNITDY 82

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            N   L V +T   L   A+    +    ++A+TG++GK+ V  ++ Q+           
Sbjct: 83  LNCNWLFVQDTLHALQQLATYHRKQFAYPVIAITGSNGKTIVKEWLYQLLSPEYHIV--- 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 S  + +++L  P  +             +  +    S  G  +     +K   G
Sbjct: 140 -----RSPKSYNSQLGVPLSL-----WQMDGQHNLAIIEAGISKVGEMEAIERMVKPTIG 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H D   + +     K++LF++       A     +    +            
Sbjct: 190 ILTNIGHAHDDGFASTKEKTIEKLKLFKD-------ADKIVYNPTYVDSAIEVPGRHHFT 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +G   +      +    ++  +  +   + +    P   +  + N +    L +AIG 
Sbjct: 243 WRIGKGAQLEVTASLKENGSQYVLEATYLQQSYVLTVPFVDKASIENLVCCWALMLAIGY 302

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS-LEMILKNIRTITSGRIIV 386
           ++ ++++ +++L  V  R E     +    I   Y++  +S L  +    +     R ++
Sbjct: 303 EAMVIVDRVKRLLPVSMRLELKKGINNNSIIDDSYSNDLSSLLIALDFLKQQQQHSRKML 362

Query: 387 VFGCGGDRDQGKRPIMGKIALDL 409
           +        Q +  +  K+A  L
Sbjct: 363 ILSDLPTVGQNQTALYTKVASML 385


>gi|266625297|ref|ZP_06118232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
 gi|288862800|gb|EFC95098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
          Length = 111

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++++      L+           +  ++ VS DSR ++   +FV +VG K D H FI QA
Sbjct: 7   KEILEATGGRLLCGS-------PDTPLDHVSIDSRTMKGNDLFVPLVGEKVDAHRFIGQA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
              GA A   S    ++D       N P + V +T++ L    +    +    ++ +TG
Sbjct: 60  FDNGAAATFTSEHDVMED-------NRPWIRVSDTKRALQALGAWYRRRLKLPLVGITG 111


>gi|170731879|ref|YP_001763826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815121|gb|ACA89704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
          Length = 468

 Score = 95.0 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 138/411 (33%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                       + VS+DSR +  G +FVA+ G + D H F+          +    A +
Sbjct: 15  GATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAA 66

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P++    TR  L   A     + P  ++AVTG++GK++V   +  I  
Sbjct: 67  ALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++     +++           P+ L +  +      +  + +          R
Sbjct: 127 AAVGADARLATAGNLNNDV-------GLPLTLLRLSAAHRLAVIE-IGMNHPGETEVLAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L           N  R+H ++  T +A            LP +  A+  ADDAY+     
Sbjct: 179 LTA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALPPDGVAVFPADDAYAGIWRV 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++    +    + V    +  ++ I              GE    NAL A
Sbjct: 236 AATGNRILDFALHDAERQNDAQ-VVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILK 374
               +  G+  + + + LE    V GR +    +     G  +  D Y    +S+   + 
Sbjct: 295 TAAALGAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 355 VLAAHPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFAFGDASRD 405


>gi|254373068|ref|ZP_04988557.1| cyanophycin synthetase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570795|gb|EDN36449.1| cyanophycin synthetase [Francisella novicida GA99-3549]
          Length = 940

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   GR I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGRKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|163786279|ref|ZP_02180727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
 gi|159878139|gb|EDP72195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
          Length = 251

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N VS+D+R +    I+ A+ G   DG+ F+ +A+  GA+  VV    ++ + +       
Sbjct: 14  NSVSTDTRKLPKECIYFALKGENFDGNKFVAKAVENGAKYCVVDDEDAMINEN------- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             ++V++    L   A+         I+++TG++GK++    +  +   +      +G  
Sbjct: 67  -CILVEDVLTTLQQLATYHRNSIGIPIISLTGSNGKTTTKELINSVLTTTFNVKATLGNL 125

Query: 151 STI 153
           +  
Sbjct: 126 NNH 128


>gi|58698291|ref|ZP_00373208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58535164|gb|EAL59246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 122

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + +S+D+R I+ G +F+A+ G   DGH F+ +A  +GA A +VS              + 
Sbjct: 27  SNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKGAVAAIVSE---------GKYKSF 77

Query: 91  PILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGK 126
           P+++V +T K L   AS           ++AVTG+ GK
Sbjct: 78  PLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGK 115


>gi|298481692|ref|ZP_06999883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
 gi|298272233|gb|EFI13803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
          Length = 431

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 134/375 (35%), Gaps = 23/375 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    I  +  
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIID------EIQYAIEGDQR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  +
Sbjct: 69  YILVDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLN 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  + + A+  G  +   +  +   G  TN
Sbjct: 129 NHIGVPTTLLRLKPE-------------HDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K++   I+ D+     +M  +           
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNP---YLMNISQGLNLISYGTE 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       + +   +     +G+       L GE+   NAL A  +    G+++  
Sbjct: 233 DDLYVNGRITGNSPYLAFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKK 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + L +      R +   T      I   Y     S+   L+N R +T    +++ G  
Sbjct: 293 IDKALAEYTPQNNRSQLKKTE-NNTLIIDAYNANPTSMMAALQNFRNMTVPHKMLILGDM 351

Query: 392 GDRDQGKRPIMGKIA 406
            +          KI 
Sbjct: 352 RELGADSPAEHQKIV 366


>gi|319789828|ref|YP_004151461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114330|gb|ADU96820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
          Length = 432

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 13/143 (9%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   E++    +        +   V  DSR I  G +F+ + G + DGHLFI  A ++G
Sbjct: 3   AKTLAEIVKGELVGSG-----RFGGVHFDSREIAKGELFIPVKG-RRDGHLFINDAFSRG 56

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A   +             +      +VV +T +     A     K    ++ VTG+ GK+
Sbjct: 57  AAGTLTERRVE-------LPPGKFQVVVRDTLEAFERLARWKREKFKGTVIGVTGSVGKT 109

Query: 128 SVASFVQQICQRSGLSSFQIGPT 150
           +    + ++  R+  +S +    
Sbjct: 110 TTKELLGKLLGRNCYTSKKSFNN 132


>gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
 gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
          Length = 831

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 130/391 (33%), Gaps = 32/391 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +       +E  I  + +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 4   TIEKVTTLIGARRYGDKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +  VV     +    A+   +   L V NT + L   A R   +    ++ +TG++GK+
Sbjct: 64  VKNFVV---TEVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  ++L    +      V     
Sbjct: 121 MVKEWLYQLLSPQMCVT--------RSPRSYNSQIGVPLSVWLMNEQTE-----VGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+      TN+G  H    +++      K+ LF          +  
Sbjct: 168 GISQPGEMLALRDIIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLF----HDARTVVYN 223

Query: 248 ADDAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ADD   + V+ +                                         I   G++
Sbjct: 224 ADDELVERVLAQMESTLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEE 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +  P   +  + N+++ A + + IGI    +   ++ +  V  R E          I 
Sbjct: 284 NWYSIPFIDDASICNSIICAIVALRIGIAPDELDRRMQGIEQVAMRLEVKEGQHGCTLIN 343

Query: 360 VDYAH--TSNSLEMILKNIRTITSGRIIVVF 388
             Y     S  + +   N R    GR   + 
Sbjct: 344 DSYNSDINSLDIALDFMNRRPDHKGRRHTLI 374


>gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
 gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
          Length = 451

 Score = 95.0 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 86/437 (19%), Positives = 148/437 (33%), Gaps = 45/437 (10%)

Query: 10  DFPELINQLSIFPMQWRERKIN----EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
              +LI  L   P+   E  +      + +D+R I+ G +F+A  G K DGH FI  AIA
Sbjct: 6   TLNQLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFISSAIA 65

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA A +V   Y             P+L V NT +           +    ++ VTG+ G
Sbjct: 66  RGAIAAIVDDDYE--------NPGLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +          +  +G    +     +       P  L +  +         +
Sbjct: 118 KTTTKELI----------AAVLGTKGNVLKTYGNYNNEIGVPKTLLELNAE---HDYAVI 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +     G         +   G  TN+G  HI+   +++A   A        +PK+S AI
Sbjct: 165 EMAMRGRGQIAELAQIARPTIGVITNVGTAHIELLGSEEAIAEA-KCELLAEMPKDSVAI 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D+        +  +       +        L     +                   P
Sbjct: 224 LNHDNPLLMATAAKFWSGEVLTYGLSGGDVQGSLVDNAIVEVAG----------LRLPLP 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N L A  +   +GI+ + +      +++  GR +     +    +   Y   
Sbjct: 274 LPGRHNATNYLAALAVAKVLGIEWSSLQ-AGVSVNMPTGRSQRFSLPNDVLILDETYNAA 332

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPR 421
             ++   L+ +      R I V G     G+R       +G+   +L  D  +V  D   
Sbjct: 333 PEAMLAALQLLADTPGKRKIAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVD--- 389

Query: 422 SEDPEKIRAEIIHGIPG 438
            ED E I      GIP 
Sbjct: 390 GEDAEAIARS-AEGIPS 405


>gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
 gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
          Length = 831

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 130/391 (33%), Gaps = 32/391 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +       +E  I  + +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 4   TIEKVTTLIGARRYGDKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIPELYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +  VV     +    A+   +   L V NT + L   A R   +    ++ +TG++GK+
Sbjct: 64  VKNFVV---TEVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  ++L    +      V     
Sbjct: 121 MVKEWLYQLLSPQMCVT--------RSPRSYNSQIGVPLSVWLMNEQTE-----VGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+      TN+G  H    +++      K+ LF          +  
Sbjct: 168 GISQPGEMLALRDIIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLF----HDARTVVYN 223

Query: 248 ADDAYSKEVMKRA--------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           ADD   + V+ +                                         I   G++
Sbjct: 224 ADDELVERVLAQMESTLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEE 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             +  P   +  + N+++ A + + IGI    +   ++ +  V  R E          I 
Sbjct: 284 NWYSIPFIDDASICNSIICAIVALRIGIAPDELDRRMQGIEQVAMRLEVKEGQHGCTLIN 343

Query: 360 VDYAH--TSNSLEMILKNIRTITSGRIIVVF 388
             Y     S  + +   N R    GR   + 
Sbjct: 344 DSYNSDINSLDIALDFMNRRPDHKGRRHTLI 374


>gi|237719731|ref|ZP_04550212.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147335|ref|ZP_07040400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
 gi|229451000|gb|EEO56791.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514613|gb|EFI38497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
          Length = 431

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 134/375 (35%), Gaps = 23/375 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    +  +  
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIID------EIQYAVEGDQR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  +
Sbjct: 69  YILVDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLN 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  + + A+  G  +   +  +   G  TN
Sbjct: 129 NHIGVPTTLLRLKPE-------------HDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K++   I+ D+     +M  +           
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNP---YLMNISQGLNLISYGTE 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       + +   +     +G+       L GE+   NAL A  +    G+++  
Sbjct: 233 DDLYVNGRITGNSPYLAFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKK 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + L +      R +   T      I   Y     S+   L+N R +T    +++ G  
Sbjct: 293 IDKALAEYTPQNNRSQLKKTE-NNTLIIDAYNANPTSMMAALQNFRNMTVPHKMLILGDM 351

Query: 392 GDRDQGKRPIMGKIA 406
            +          KI 
Sbjct: 352 RELGADSPAEHQKIV 366


>gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 825

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 146/384 (38%), Gaps = 26/384 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   E  I+ V +DSR +      +F A+  N+ DGH +IP+   +G 
Sbjct: 5   IERVATLIGAQRLGNTEAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYIPELYRRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     + + +A +  N   L V +TR+ L   A R        I+ +TG++GK+ 
Sbjct: 65  RCFVVE---EVPERAAELFGNANFLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+     + +         S  + ++++  P  ++L  + S      +      
Sbjct: 122 VKEWLYQLLSPQMVVT--------RSPRSYNSQIGVPLSVWLLNSHSQ-----LGVFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  Q   D IK      TN+G  H +   T +     K+RLFE        A    
Sbjct: 169 ISQKGEMQALHDIIKPTIAVLTNIGSAHEENFSTPEEKCREKLRLFEGAEIMVYNA---- 224

Query: 249 DDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DDA    V+   +N G      +          K      +     I   G+   +  P 
Sbjct: 225 DDALVTHVLNETNNGGQHLAWSTKSSDAAMFVTKIDKQPTHTTIHYIYKGGEPASYSLPF 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH-- 364
             E  V N+++ A +C+ +G+D+  + E + KL  V  R E     +    I   Y    
Sbjct: 285 IDEASVCNSIICATVCLHLGLDAHTIGERISKLEPVAMRLEVKEGLNGCTLINDSYNSDI 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVF 388
            S  + +   N R   +G+   + 
Sbjct: 345 NSLDIALNFMNRRPDHNGQQRTLV 368


>gi|170700178|ref|ZP_02891196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
 gi|170134910|gb|EDT03220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
          Length = 468

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 144/413 (34%), Gaps = 31/413 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                   +     VS+DSR +  G +FVA+ G++ D H F+            V++  +
Sbjct: 15  GATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGD----------VAARGA 64

Query: 79  LQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                A + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 65  AAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASI 124

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +  +  ++     +++           P+ L +         +  + +         
Sbjct: 125 FAAAVGADARLATAGNLNNDI-------GVPLTLLRLSGAHRVAVIE-LGMNHPGETEIL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL           N  R+H ++  T +A            L  +  A+  ADDAY+   
Sbjct: 177 ARLAA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALTPDGVAVFPADDAYASIW 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A        ++    + +  + V    +  ++ I              GE    NAL
Sbjct: 234 RVAATGNPILDFALHDAERQVEAQ-VTGRLHGGELAIDTPSGAMTVHLRALGEHNARNAL 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMI 372
            AA   +A GI+ A + + LE    V GR +    +     G  +  D Y    +S+   
Sbjct: 293 AAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAA 352

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
           +  +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 353 IDVLAAQPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 836

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 144/449 (32%), Gaps = 38/449 (8%)

Query: 30  INEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           I  +S DSR I     +FVA+ G   DGH F+ +A   GA+  +V   +           
Sbjct: 25  IKHISIDSRRIFSPSTLFVALKGQAHDGHAFVAEAAKSGAKYALVHQDWQ----PPYPLK 80

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  +L V++  K     A     +  +  +   G S   ++   + +             
Sbjct: 81  DIILLRVNDPLKAFQALAKAYRQERTQCKVVAIGGSYGKTMLKDLLETMLAKRYKVMA-- 138

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                S  + ++++  P  ++  K    ++           S  G  +   D I      
Sbjct: 139 -----SPESFNSQIGVPLSLFKIKDSHEIALVEAAF-----SEPGEMEVLADIIMPEHVI 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T++G  H+    + +      ++L  + L K++ A+I +   +   + +R         
Sbjct: 189 LTSIGAKHLHTLGSLETTALEMVKL-LQPLKKDNWALIPSTPLFGPHLQERTSRCLFWTQ 247

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                   I       +     V    +      +                   +     
Sbjct: 248 PDSRLPHAISASTTPQMTLPYSVHFPDQYLFQGEMTKGFSYSLDLINTACKSAWLFDLPS 307

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVV 387
              + E L+     P R E     +    I   Y+    S++  L  ++ + S  +  ++
Sbjct: 308 H-TISEVLQTYQFEPMRTEIWKAPTGMLFINDPYSSDPQSMDQALTRLQYLASNEKKTLI 366

Query: 388 F----GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           F    G    R+   R I   IA       ++    P S D + + ++++          
Sbjct: 367 FGGLKGISDQRENEYRRIGLAIAQSHIQHLML--IGPLS-DFQSLVSKLLPHTTISFYPT 423

Query: 444 NRIEAIRTAIEMLNK-QD---VLVVAGKG 468
                I  A+  L + +D   V+++  KG
Sbjct: 424 -----IAHALRHLREVEDPRQVVLI--KG 445


>gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 479

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 158/454 (34%), Gaps = 41/454 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A       A   
Sbjct: 26  RDVFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAGAALAVVERA-----QRAKFA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++ P+LVVD+    L         +    I+AVTG+ GK+S    ++ +    G +   +
Sbjct: 81  ADAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTSTKEALRGVLGAQGETHASV 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ LA+  + +         +  +  G  +  +  ++    
Sbjct: 141 ASFNNHWGV----------PLSLARCPADVR---YAVFEIGMNHAGEIEPLVKMVRPHLV 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHNAGC 265
             T +   H+++    +A  +AK  +F   L     A++  D+A  K +    R    G 
Sbjct: 188 IITTVEPVHLEFFSGIEAIADAKAEIFAG-LVPGGTAVLNRDNAMFKRLTDSARKAGVGR 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V           L  V    +   V  ++ G+D  +   +PG     N+L        +
Sbjct: 247 VVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAAAETV 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTI--- 379
           G D AL    L  +    GR              +    Y     S+   L  +  +   
Sbjct: 307 GADLALAALALSHVQPAAGRGVRRALEFGQSEATLIDESYNANPASMVAALGVLGQVPVG 366

Query: 380 TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHG 435
             GR IVV G     G         + +   + A D+        R+     +   +  G
Sbjct: 367 PQGRRIVVLGDMLELGPAGPELHRDLAESVRNNAIDLVFCCGPLMRN-----LWDALSSG 421

Query: 436 IPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
             G   +     A+    +  +   DVL++  KG
Sbjct: 422 KRGGYAET--AAALESQVVAAIRAGDVLMI--KG 451


>gi|33862674|ref|NP_894234.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634590|emb|CAE20576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 465

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 154/456 (33%), Gaps = 40/456 (8%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           ++ +  + +DSR +  G  FV +VG   +GH F+ QA+    +A VV+           +
Sbjct: 26  DQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALKLEVQAAVVARKDHHP-----V 80

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P  +V++T +           +    ++AVTG++GK++    ++      G     
Sbjct: 81  PEGLPHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTTRELIRSALTPLGEVLAS 140

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
            G  +               P+ L +A S     G   V +     G  +      +   
Sbjct: 141 AGNNN----------NDVGVPLTLLQAHSD---HGAVVVEMGMRGIGEIERLSCCTQPDV 187

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD----DAYSKEVMKRAHN 262
              TN+G  H+    ++ A  +AK  +   L P+    I   D    DA  +    R   
Sbjct: 188 AVITNIGNAHVGRLGSRAAIASAKCEITTCLKPRGVIVIPAGDLLLEDALERIWRGRVIR 247

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-----DFLFPLPGEFQVYNALV 317
              +        +   L +           + +   +       +  PL G     N ++
Sbjct: 248 VAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGNAYTLPLEGMHNACNLML 307

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   + +    +      +     R   VG  +        Y  +  +++  L+ + 
Sbjct: 308 ALAVARELDVCKESLSNLKVDVPGGRSRRLKVGNFTVLDET---YNASPEAVQAALE-LL 363

Query: 378 TITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEII 433
            I  GR   V G     GD+       + + A+ +  D  +V      +    +  A   
Sbjct: 364 AIQPGRHFAVLGTMLELGDQSVALHRQVAERAVQVGLDGLVVVA----AGAEAEAMATAA 419

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
             +P      N  +A +     L   DV+++ A +G
Sbjct: 420 GSLPHLAVVANPEQAAQPLQAWLEAGDVVLLKASRG 455


>gi|228933511|ref|ZP_04096364.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826240|gb|EEM72020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 171

 Score = 94.6 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 13/153 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN   +    +   +I+ V  DS++++ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVINGEGLHE-SFHHLEIHGVRIDSKNMKEGNLFVPIIRMK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+  GA A +   +Y             PI+ VD T   L   A     +    ++ +
Sbjct: 63  KEAMDNGAVASLWKKSYGTP------PKGVPIIFVDETLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           TG++GK++V   ++ I + +       G  ++ 
Sbjct: 117 TGSNGKTTVKDIIEGILRSTYRVHKTKGNFNSQ 149


>gi|56708207|ref|YP_170103.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670678|ref|YP_667235.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|187931944|ref|YP_001891929.1| cyanophycin synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457311|ref|ZP_03665784.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370694|ref|ZP_04986699.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875020|ref|ZP_05247730.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604699|emb|CAG45763.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321011|emb|CAL09146.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568937|gb|EDN34591.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187712853|gb|ACD31150.1| cyanophycin synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254841019|gb|EET19455.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159425|gb|ADA78816.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 940

 Score = 94.6 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   G+ I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGKKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|330895234|gb|EGH27572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 128

 Score = 94.6 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 41  QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100
           + G +F+A+ G   DG   I  A+ +GA A+    AY ++       ++ P++ V     
Sbjct: 2   RPGDLFLAVPGINVDGRAHIADALKRGAAAV----AYEVEGSIVLPITDVPLIPVKGLAA 57

Query: 101 FLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST-ISSFA 157
            LS  A R YG      N++ VTGT+GK+SV   V Q     G     +G   T      
Sbjct: 58  QLSAIAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRCGIVGTLGTGFYGSL 117

Query: 158 QDNRLTTPSPI 168
           Q  R TTP PI
Sbjct: 118 QSGRHTTPDPI 128


>gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
 gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
          Length = 479

 Score = 94.6 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 78/218 (35%), Gaps = 18/218 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           L   +    +    R I  VS D+R +Q G +F AI G+  DGH ++  A  +GA   VV
Sbjct: 13  LAAAVGGTLIGAPARAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMAADRGAALSVV 72

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                  D   T+     +L VD+    L        G+    I+ VTG+ GK++    +
Sbjct: 73  ER-----DRVGTLPEGAALLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKTTTKEAL 127

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                  G +       +               P+ LA+  +  +        +  +  G
Sbjct: 128 LLALGADGPTHASAASYNNHWGV----------PLSLARMPASSA---YGVFELGMNHAG 174

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +  +  ++      T +   HI      +A  +AK 
Sbjct: 175 EIEPLVKMVRPHVAVITTIEPVHIAQFPNVEAIADAKA 212


>gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
 gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
          Length = 444

 Score = 94.6 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 120/369 (32%), Gaps = 34/369 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS+D+R+I    I+ A+ G   +G+ F  +A+A+GA   V+                  
Sbjct: 14  GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT------- 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+VD+    L   A+    K    ++ +TG++GK++    ++ +  +        G  +
Sbjct: 67  -LLVDDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLN 125

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  V + A+  G         +   G  T+
Sbjct: 126 NNIGVPLTLLTIKPE-------------TDIAIVEMGANHPGEIAFLCSIAEPDYGYITS 172

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L       I  AD+  ++ +++  +N     +  G
Sbjct: 173 IGKAHLEGFGSFEGVIKTKGELYDYLKTHHKTIIANADNPITEALLENYNNVYSFGVGEG 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE------------FQVYNALVAA 319
                  L            ++    + F        +            +   N   + 
Sbjct: 233 VNVSVQCLSTQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASV 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                  + +  + + +E       R + +        +   Y    +S+   + N+ ++
Sbjct: 293 AFGRYFKLSTKAIQKGIESYIPQNNRSQLLQWG-SNTVLLDAYNANPSSMTAAIDNLLSM 351

Query: 380 TSGRIIVVF 388
            S    V+ 
Sbjct: 352 NSFPNKVLI 360


>gi|58699164|ref|ZP_00373984.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534320|gb|EAL58499.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 113

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGHETVH 473
           VTDDN R EDP KIR +I+   P  +E G R EAI   +++  N+  +L+VAGKG+E   
Sbjct: 32  VTDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLVAGKGNEKFQ 91

Query: 474 IVTNGEKKMSVDCDIIRE 491
           I+ N       D ++I+ 
Sbjct: 92  IIGNQT-FEFSDVEVIKN 108


>gi|319949798|ref|ZP_08023821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
 gi|319436538|gb|EFV91635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
          Length = 500

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 84/496 (16%), Positives = 155/496 (31%), Gaps = 57/496 (11%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ- 62
           DL   +   ++              +   V  DSR +  G +F+A+ G + DGH F+ + 
Sbjct: 3   DLTLGEIAGIVGG--RLVGGDPSTAVTGTVEFDSRRLTPGGLFLALPGERVDGHDFVARA 60

Query: 63  ----------AIA----QGAEAIV--VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
                     A       GA+ +V  V    +     A     +   V       L   A
Sbjct: 61  LDAGAAGALVAHEVDGVDGAQIVVPAVDRRETNAMALAADTDGSGAAV----LTALGALA 116

Query: 107 SRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                +    H   ++ VTG+SGK+S    +  +   +G      G  +           
Sbjct: 117 RASVDRLVADHGLVVVGVTGSSGKTSTKDLIGAVLSAAGTVVAPPGSFNNEIGHPWTALR 176

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 +L   LS  +   +  ++  A                 G   N+G  H+    +
Sbjct: 177 ADEDTDFLVLELSARAPGNIRELAALAP-------------PRIGVVLNVGTAHLGEFGS 223

Query: 223 QQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           ++       ++            A++ ADD     +  R       V   G         
Sbjct: 224 REVIAATKGELVEALPDAAHGGVAVLNADDDRVAAMAGRTSAEVVTVGLGGSADVRAEGV 283

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           ++     +   T+     + +    + GE QV NAL AA + +A G+D   +   L    
Sbjct: 284 RLD-DEVRASFTLVTPRGEAEVALRVHGEHQVGNALSAAAVGLACGMDVERIAAALGTAE 342

Query: 341 VV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG-- 391
                R +   T      I   Y    +S+   LK++  +         R   V G    
Sbjct: 343 AASERRMDVRVTADGITVINDSYNANPDSMRAALKSLAVMARSGGGRPRRTWAVLGEMAE 402

Query: 392 -GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            G+    +  ++G+  + L  + + +V    P+    +    E   G           EA
Sbjct: 403 LGEDAVIEHDLIGRFLVRLDVSQLVVVGLGRPQRAMFQGAIQEGSWG-SEAEHVATAEEA 461

Query: 449 IRTAIEMLNKQDVLVV 464
           +      L   D+++V
Sbjct: 462 VEILDSRLEPGDIVLV 477


>gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 120/369 (32%), Gaps = 34/369 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS+D+R+I    I+ A+ G   +G+ F  +A+A+GA   V+                  
Sbjct: 14  GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT------- 66

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            L+VD+    L   A+    K    ++ +TG++GK++    ++ +  +        G  +
Sbjct: 67  -LLVDDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLN 125

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  V + A+  G         +   G  T+
Sbjct: 126 NNIGVPLTLLTIKPE-------------TDIAIVEMGANHPGEIAFLCSIAEPDYGYITS 172

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L       I  AD+  ++ +++  +N     +  G
Sbjct: 173 IGKAHLEGFGSFEGVIKTKGELYDYLKTHHKTIIANADNPITEALLENYNNVYSFGVGEG 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE------------FQVYNALVAA 319
                  L            ++    + F        +            +   N   + 
Sbjct: 233 VNVSAQCLSTQPVKIQFADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTNIAASV 292

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                  + +  + + +E       R + +        +   Y    +S+   + N+ ++
Sbjct: 293 AFGRYFKLSTKAIQKGIESYIPQNNRSQLLQWG-SNTVLLDAYNANPSSMTAAIDNLLSM 351

Query: 380 TSGRIIVVF 388
            S    V+ 
Sbjct: 352 NSFPNKVLI 360


>gi|254369189|ref|ZP_04985201.1| hypothetical protein FTAG_00136 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122139|gb|EDO66279.1| hypothetical protein FTAG_00136 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 940

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   G+ I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPVAIKLVSQMIMNMEFAGKKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|172059545|ref|YP_001807197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992062|gb|ACB62981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
          Length = 468

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 144/413 (34%), Gaps = 31/413 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                   +     VS+DSR +  G +FVA+ G++ D H F+            V++  +
Sbjct: 15  GATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGD----------VAARGA 64

Query: 79  LQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                A + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 65  AAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASI 124

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +  +  ++     +++           P+ L +         +  + +         
Sbjct: 125 FAAAVGADARLATAGNLNNDI-------GVPLTLLRLSGAHRVAVIE-LGMNHPGETEIL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL           N  R+H ++  T +A            L  +  A+  ADDAY+   
Sbjct: 177 ARLAA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALTPDGVAVFPADDAYASIW 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A        ++    + +  + V    +  ++ I              GE    NAL
Sbjct: 234 RVAATGNPILDFALHDAERQVEAQ-VTGRLHGGELAIDTPAGAMTVRLRALGEHNARNAL 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMI 372
            AA   +A GI+ A + + LE    V GR +    +     G  +  D Y    +S+   
Sbjct: 293 AAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAA 352

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
           +  +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 353 IDVLAAQPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|291278995|ref|YP_003495830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753697|dbj|BAI80074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
          Length = 453

 Score = 94.2 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 130/381 (34%), Gaps = 30/381 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK  ++  + F  LI+ +S   +++     N V  +S+ ++ G IF+A+ G   DG+ F 
Sbjct: 1   MKTLNI-KEAFKNLIDYISPTIVEY-----NNVVINSKEVKKGDIFLALKGTNVDGNSFF 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A  +GA   V  + Y     S         ++V+++   +  F       +    +A+
Sbjct: 55  KEAYERGAILTVFDNPYFYNKASINK------VLVEDSFNAIKSFGIWKLKNNFAKRVAI 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK++    + +I  +   S       +     A       P  +            
Sbjct: 109 TGSVGKTTTKKLLYEIFSKQYQSYMSYKNYNNELGIAISCAN-IPDEVD----------- 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  +S G  +   D I+      T +   HI            K  + E     
Sbjct: 157 -YAFFEIGTNSKGEIKKYTDYIRPEVAVITKIASSHIGRFGDLNEIAAEKFSIAE----T 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +S   ++ ++  +  +                +     +  + ++    +  +      F
Sbjct: 212 DSVKELWLNENDTVYLKDEIVKNKKIFTVGFSEKADFRIIDIKSLDGGYEFYVKFNRDKF 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F         + NA +AAG+ +  GI+   + + +++      R   V        I  
Sbjct: 272 KFQINHFYYHFILNASMAAGVALREGIEYDYIYQAIKEFLPEEKR-GVVYNYENIAIIDD 330

Query: 361 DYAHTSNSLEMILKNIRTITS 381
            Y  + +S+   LK++     
Sbjct: 331 TYNASIDSITAALKSLDKYKC 351


>gi|326771700|ref|ZP_08230985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
 gi|326637833|gb|EGE38734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
          Length = 483

 Score = 94.2 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 166/488 (34%), Gaps = 48/488 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L         ++   +    +   +  +   V +DSR    G +FVA+ G + DGH  
Sbjct: 5   MRLS------LSQIAAAVGGRLIG-PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAH 57

Query: 60  IPQAIAQGAE-AIVVSSAYSLQDFSATIRSNTPI--LVVDNTRKFLSLFASRLYGKHPE- 115
           +  A   GA  AIV     +    S       PI  ++V++T   L   A        + 
Sbjct: 58  LGSARDLGAVGAIVSDLEAARSGLSQGQAEEVPIGLVLVEDTVAALGALARTHLEALRQA 117

Query: 116 --------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                    ++A+TG+ GK++     +Q+   SG +       +          LT    
Sbjct: 118 AAEQGDRLTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFN----NEIGLPLTVLEA 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      S     + + AS  G   +  D   L A     +G  H+    + +   
Sbjct: 174 DE---------STRYLVLEMGASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVA 224

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +    L  E  AI+ ADDA +  + + A        + G Q              
Sbjct: 225 AAKAEIIAG-LRPEGIAILNADDARAAAMAELAPARVLTFSARGRQADLRAENVDLDAAA 283

Query: 288 KQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPG 344
           +    + +    +       + G   V NAL AAGL +A G+   LV + L  +    P 
Sbjct: 284 RAAFDLHLPGLAEPRRVQLAVAGVHNVSNALAAAGLALAAGLAPELVADRLGSVSIESPH 343

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRP 400
           R +    +     I   Y    +S+   L  +  +   R  VV        G+       
Sbjct: 344 RMDISELSGDLLLIDDSYNANIDSMTAALAVLPALAGDRRRVVVISEMLELGESSAADHA 403

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             G++A   A  A++       E  E  RA    G+   +   +   AI     +L   D
Sbjct: 404 RTGELAAR-AGAAMLIGIGSTQEALEAARA---RGVE-VVGFDDAATAISQIDALLCDGD 458

Query: 461 VLVVAGKG 468
            ++V  KG
Sbjct: 459 AVLV--KG 464


>gi|115350513|ref|YP_772352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria AMMD]
 gi|115280501|gb|ABI86018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia ambifaria AMMD]
          Length = 468

 Score = 94.2 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 144/413 (34%), Gaps = 31/413 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                   +     VS+DSR +  G +FVA+ G++ D H F+            V++  +
Sbjct: 15  GATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGD----------VAARGA 64

Query: 79  LQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                A + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 65  AAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASI 124

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +  +  ++     +++           P+ L +         +  + +         
Sbjct: 125 FAAAVGADARLATAGNLNNDI-------GVPLTLLRLSGAHRVAVIE-LGMNHPGETEIL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL           N  R+H ++  T +A            L  +  A+  ADDAY+   
Sbjct: 177 ARLAA--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALTPDGVAVFPADDAYASIW 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
              A        ++    + +  + V    +  ++ I              GE    NAL
Sbjct: 234 RVAATGNPILDFALHDGERQVEAQ-VTGRLHGGELAIDTPSGAVTVRLRALGEHNARNAL 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMI 372
            AA   +A GI+ A + + LE    V GR +    +     G  +  D Y    +S+   
Sbjct: 293 AAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMRAA 352

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
           +  +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 353 IDVLAAQPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|237715366|ref|ZP_04545847.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405210|ref|ZP_06081760.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645647|ref|ZP_06723336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294806411|ref|ZP_06765254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444675|gb|EEO50466.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356085|gb|EEZ05175.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638992|gb|EFF57321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294446426|gb|EFG15050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 431

 Score = 94.2 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 134/375 (35%), Gaps = 23/375 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    +  +  
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIID------EIQYAVEGDQR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  +
Sbjct: 69  YILVDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLN 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  + + A+  G  +   +  +   G  TN
Sbjct: 129 NHIGVPTTLLRLKPE-------------HDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K++   I+ D+     +M  +           
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKDATTFIHHDNP---YLMNISQGLNLISYGTE 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       + +   +     +G+       L GE+   NAL A  +    G+++  
Sbjct: 233 DDLYVNGRITGNSPYLAFEWKAGKDGEAHQVRTQLIGEYNFPNALAAITIGRFFGVEAKK 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + + L +      R +   T      I   Y     S+   L+N R +T    +++ G  
Sbjct: 293 IDKALAEYTPQNNRSQLKKTE-DNTLIIDAYNANPTSMMAALQNFRNMTVPHKMLILGDM 351

Query: 392 GDRDQGKRPIMGKIA 406
            +          KI 
Sbjct: 352 RELGADSPAEHQKIV 366


>gi|328675939|gb|AEB28614.1| Cyanophycin synthase [Francisella cf. novicida 3523]
          Length = 940

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNVSADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   G+ I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGKKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IVELAKTAAPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISIDNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|293370650|ref|ZP_06617202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634384|gb|EFF52921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
          Length = 431

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 134/375 (35%), Gaps = 23/375 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V++DSR+   G +F+A+ G   +G+ F   A+  G    ++  A         +  +  
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEA------EYAVEGDKR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  +
Sbjct: 69  YILVDNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLN 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  + + A+  G  +   +  +   G  TN
Sbjct: 129 NHIGVPTTLLRLKPE-------------HDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K++   I+ D+AY   + +             
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNAYLMNIAQ---GLNLISYGTE 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       + +   +     +G+       L GE+   NAL A  +    G+++  
Sbjct: 233 DDLYVNGQITDNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKK 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + E L        R +   T      I   Y     S+   L+N R +T    +++ G  
Sbjct: 293 IDEALASYTPQNNRSQLKKTE-DNTLIIDAYNANPTSMMAALQNFRNMTVPHKMLILGDM 351

Query: 392 GDRDQGKRPIMGKIA 406
            +          KI 
Sbjct: 352 RELGAESPAEHQKIV 366


>gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16]
 gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16]
          Length = 848

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 133/368 (36%), Gaps = 24/368 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQ 62
           +++      ++ ++    +  +   I+ + +DSR +      +F AI   + +G  +IP 
Sbjct: 16  NIMSYTIESIVEKIGARRLGNKPAAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPD 75

Query: 63  AIAQGAE-AIVVSSAY-----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
              +G    +V S  +       +    T+      L+V NT K L   A +  G     
Sbjct: 76  LYERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIP 135

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK+ V  ++ Q+     +           S  + ++++  P  +        
Sbjct: 136 VVGITGSNGKTIVKEWLHQLLSPDRVIV--------RSPRSYNSQIGVPLSV-----WQM 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +       S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+ 
Sbjct: 183 NEESELGIFEAGISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFK- 241

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +       ++  S  V K    A     S+    + +++ +V    +   ++    
Sbjct: 242 --DCDVVIYNGDNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYL 299

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D  F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +   
Sbjct: 300 EMDNTFCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNCI 359

Query: 357 RIYVDYAH 364
            I   Y  
Sbjct: 360 LINDSYNS 367


>gi|60680368|ref|YP_210512.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis NCTC 9343]
 gi|60491802|emb|CAH06560.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis NCTC 9343]
 gi|301161901|emb|CBW21445.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis 638R]
          Length = 840

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 133/368 (36%), Gaps = 24/368 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQ 62
           +++      ++ ++    +  +   I+ + +DSR +      +F AI   + +G  +IP 
Sbjct: 8   NIMSYTIESIVEKIGARRLGNKPAAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPD 67

Query: 63  AIAQGAE-AIVVSSAY-----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
              +G    +V S  +       +    T+      L+V NT K L   A +  G     
Sbjct: 68  LYERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIP 127

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK+ V  ++ Q+     +           S  + ++++  P  +        
Sbjct: 128 VVGITGSNGKTIVKEWLHQLLSPDRVIV--------RSPRSYNSQIGVPLSV-----WQM 174

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +       S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+ 
Sbjct: 175 NEESELGIFEAGISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFK- 233

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +       ++  S  V K    A     S+    + +++ +V    +   ++    
Sbjct: 234 --DCDVVIYNGDNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYL 291

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D  F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +   
Sbjct: 292 EMDNTFCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNCI 351

Query: 357 RIYVDYAH 364
            I   Y  
Sbjct: 352 LINDSYNS 359


>gi|225850024|ref|YP_002730258.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
 gi|225646530|gb|ACO04716.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
          Length = 440

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 16/106 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+++++     E++       ++  +++I     DSR  Q    FV + G+K DGH FI
Sbjct: 1   MKIKEIL-----EIVKG-RPLKLRDADKEIKRFIIDSRKAQKDSFFVPLKGSKADGHDFI 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
             A+ +G+   + S     ++           ++VD+T K L+   
Sbjct: 55  DDALKKGSSGYLTSIETDYKNG----------ILVDDTLKALTEIG 90


>gi|206895846|ref|YP_002247446.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738463|gb|ACI17541.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 433

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 132/378 (34%), Gaps = 34/378 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
             SSD R    G IF A  G   D    IP+ +   A+ I+               + + 
Sbjct: 22  NFSSDDRWFMDGDIFFAFTGAHFDARTLIPE-LKNKAKLIITEKEA----------TGSN 70

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           ++   + R+    F       +P ++L +TGT GKS++A ++  +          +G  +
Sbjct: 71  VIYRPDARQIYKKFIKAGAKVYPLHVLGITGTKGKSTIAWWLSSL--LGFGYMGTLGIRA 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
               F      T    +      +     G  H  VE SS GL + RL  + L    +T 
Sbjct: 129 KDVKFVLPTTTTGADAL-----FNTYRRTGEDHWVVELSSIGLAEDRLP-LPLEGLVWTT 182

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
              +H+DYH+T  AYF AK + F  L       +           + +A      +    
Sbjct: 183 FEPEHMDYHKTTYAYFLAKKKAFSYLKKGTFALLGQN--------VPQADIGTPYLTLRY 234

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                 ++        +Q+V I           P+PG+   ++A+               
Sbjct: 235 GDTGNFYILDRREYEWEQEVKIYTPQGPSVVHIPMPGKVFAHDAVGTVAAAFLW-----K 289

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
             +   +   VP R         G  + +D+AHT  S++  L+ +        +V+ G  
Sbjct: 290 GTKLEGEFPSVPVRM--NHVIINGIEMVIDFAHTPESIDACLQTVAQRWGNDFVVIHGAT 347

Query: 392 GDRDQGKRPIMGKIALDL 409
           G   Q K   + K+    
Sbjct: 348 GYEPQNKSYEIIKVINRY 365


>gi|53712185|ref|YP_098177.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis YCH46]
 gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46]
          Length = 848

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 133/368 (36%), Gaps = 24/368 (6%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQ 62
           +++      ++ ++    +  +   I+ + +DSR +      +F AI   + +G  +IP 
Sbjct: 16  NIMSYTIESIVEKIGARRLGNKPAAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPD 75

Query: 63  AIAQGAE-AIVVSSAY-----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
              +G    +V S  +       +    T+      L+V NT K L   A +  G     
Sbjct: 76  LYERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIP 135

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK+ V  ++ Q+     +           S  + ++++  P  +        
Sbjct: 136 VVGITGSNGKTIVKEWLHQLLSPDRVIV--------RSPRSYNSQIGVPLSV-----WQM 182

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                +       S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+ 
Sbjct: 183 NEESELGIFEAGISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFK- 241

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               +       ++  S  V K    A     S+    + +++ +V    +   ++    
Sbjct: 242 --DCDVVIYNGDNEMISNCVGKSMLTAREIAWSMRDIERPLYISRVEKKEDHTVISYRYL 299

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D  F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +   
Sbjct: 300 EMDNTFCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNCI 359

Query: 357 RIYVDYAH 364
            I   Y  
Sbjct: 360 LINDSYNS 367


>gi|160885477|ref|ZP_02066480.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|260172201|ref|ZP_05758613.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. D2]
 gi|315920509|ref|ZP_07916749.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109099|gb|EDO10844.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|313694384|gb|EFS31219.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 431

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 134/375 (35%), Gaps = 23/375 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V++DSR+   G +F+A+ G   +G+ F   A+  G    ++  A         +  +  
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEA------EYAVEGDKR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VDN  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  +
Sbjct: 69  YILVDNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLN 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  + + A+  G  +   +  +   G  TN
Sbjct: 129 NHIGVPTTLLRLKPE-------------HDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K++   I+ D+AY   + +             
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNAYLMNIAQ---GLNLISYGTE 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       + +   +     +G+       L GE+   NAL A  +    G+++  
Sbjct: 233 DDLYVNGQITDNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKK 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + E L        R +   T      I   Y     S+   L+N R +T    +++ G  
Sbjct: 293 IDEALASYTPQNNRSQLKKTE-DNTLIIDAYNANPTSMMAALQNFRNMTVPHKMLILGDM 351

Query: 392 GDRDQGKRPIMGKIA 406
            +          KI 
Sbjct: 352 RELGAESPAEHQKIV 366


>gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 825

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 144/384 (37%), Gaps = 26/384 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   E  I+ V +DSR +      +F A+  N+ DGH +I +   +G 
Sbjct: 5   IERVATLIGAQRLGNAEAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYISELYRRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     +   +A +  +   L V +TR+ L   A R        I+ +TG++GK+ 
Sbjct: 65  RCFVVE---EVPARAAELFGDANFLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+     + +         S  + ++++  P  ++L  + S      +      
Sbjct: 122 VKEWLYQLLSPQMVVT--------RSPRSYNSQIGVPLSVWLLNSHSQ-----LGIFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  Q   D IK      TN+G  H +   T +     K+RLFE        A    
Sbjct: 169 ISQKGEMQALHDIIKPNIAVLTNIGSAHEENFATPEEKCREKLRLFEGAEVMVYNA---- 224

Query: 249 DDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           DD     V+   +N G R    +          K      +     I   G+   +  P 
Sbjct: 225 DDDLVTRVLNETNNKGERLAWSTKSPNAAMFVTKIDKQPTHTTIHYIYKGGQPASYSLPF 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH-- 364
             +  V N++V A +C+ +G+D+  + + + +L  V  R E     +    I   Y    
Sbjct: 285 IDDASVCNSVVCATICLHVGLDAHTIDKRMRRLEPVAMRLEVKEGLNGCTLINDSYNSDI 344

Query: 365 TSNSLEMILKNIRTITSGRIIVVF 388
            S  + +   N R   +G+   + 
Sbjct: 345 NSLDIALDFMNRRPDHNGQQRTLV 368


>gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
          Length = 479

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 156/452 (34%), Gaps = 44/452 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS DSR ++AG +FVAI+G   DGH ++  A+ +GA A +VS+          +R+  
Sbjct: 27  SGVSIDSRTLEAGDLFVAIIGENSDGHAYVEGALKKGAAAAIVSAPTEA------MRAAG 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++V +T   L+        +    ++AVTG+ GK+     ++ I    G +       
Sbjct: 81  PLVIVTDTLAALNALGRAARARTKAKVVAVTGSVGKTGTKEALKLILSEQGATHASAASY 140

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           + +             P+ LA+  +               +H  +   L  +     S  
Sbjct: 141 NNLWGV----------PLSLARMPAATRFGIFEVGM----NHPGEITPLSKLVEPFVSLI 186

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVL 268
                                    + L K   AI+  D+ + + +  +A  +G    + 
Sbjct: 187 TTVEAVHMEFFDSVEQIADAKGEIFDGLQKGGVAILNRDNPHYERLRAKAEKSGAGRIIS 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              ++     L+K     +   V+ ++ G+   +   +PG   V N+L       A+  D
Sbjct: 247 FGEHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLAMLACVHALEAD 306

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSR-GGRIYVD--YAHTSNSLEMILKNI---RTITSG 382
            A+    +  L    GR E    ++  G    VD  Y     S+   L  +   +   +G
Sbjct: 307 LAMAALAMASLKAPKGRGERHIVSAPLGQFTLVDESYNANPVSMRAALDALGRAKPEGNG 366

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--- 436
           R I V G     G+        +     +     +     P   +  K       G    
Sbjct: 367 RRIAVMGDMLEIGETSIEMHRGLADAVREAGIDLVF-ACGPHMRELYKALPAAAQGAYAE 425

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +A+          DV++V  KG
Sbjct: 426 TSAELGPLLRDAVE-------PGDVVMV--KG 448


>gi|89256191|ref|YP_513553.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314664|ref|YP_763387.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|167009774|ref|ZP_02274705.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367519|ref|ZP_04983545.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|89144022|emb|CAJ79270.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129563|gb|ABI82750.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253335|gb|EBA52429.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           257]
          Length = 940

 Score = 93.8 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   G+ I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGKKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTATPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|295086462|emb|CBK67985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 431

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 134/375 (35%), Gaps = 23/375 (6%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V++DSR+   G +F+A+ G   +G+ F   A+  G    ++       +    I  +  
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIID------EIQYAIEGDQR 68

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++VD+  + +   A+    +    ++ +TGT+GK++    +  +  ++    + +G  +
Sbjct: 69  YILVDDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLN 128

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                        P                +  + + A+  G  +   +  +   G  TN
Sbjct: 129 NHIGVPTTLLRLKPE-------------HDLAVIEMGANHPGEIKFLCEIAEPDYGIITN 175

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G+ H++   + +     K  L++ L  K++   I+ D+     +M  +           
Sbjct: 176 VGKAHLEGFGSFEGVIKTKGELYDFLRKKDAITFIHHDNP---YLMNISQGLNLISYGTE 232

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                       + +   +     +G+       L GE+   NAL A  +    G+++  
Sbjct: 233 DDLYVNGRITGNSPYLAFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKK 292

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + E L +      R +   T      I   Y     S+   L+N + +T    +++ G  
Sbjct: 293 IDEALAEYTPQNNRSQLKKTE-DNTLIIDAYNANPTSMMAALQNFQNMTVPHKMLILGDM 351

Query: 392 GDRDQGKRPIMGKIA 406
            +          KI 
Sbjct: 352 RELGADSPAEHQKIV 366


>gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
 gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
          Length = 459

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 136/370 (36%), Gaps = 29/370 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             IN++S +S+      +FVAI G    G+ +I +A+ +GA A+     Y          
Sbjct: 21  TDINKISMNSKECGKNDLFVAIRG----GNNYINEALEKGAYAV-----YDNAHADIKEE 71

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                  V+++ +FL  FA +        ++ +TG++GK++V     Q+           
Sbjct: 72  YKNKTFFVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTE 131

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G          +N +  P  +     L          + +  S  G  +           
Sbjct: 132 GN--------YNNHIGLPFTL-----LRLEKDDKFIILEMGMSGFGEIELLGKISNPDIS 178

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEE-----LLPKESPAIIYADDAYSKEVMKRAHN 262
             TN+G  H+++  T++  F AK  L        ++  +   +   +++  K +     +
Sbjct: 179 IITNIGESHLEFLHTKENVFKAKTELLPYTKEVLIINGDDDYLKNINESSLKTIKVLRKD 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +     S  Y G     +K  +   +     + + +   F   + GE  + N  +A  + 
Sbjct: 239 SKNIEKSNFYYGNINFDEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNILNLTMAIAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              GI+   + E ++ + +   RF+     +    I   Y  +  S++  L+    I + 
Sbjct: 299 KQFGIEDKDIEETVKNIKLTDMRFQITEKGNT-IYINDAYNASPASMKKSLETFSEIYND 357

Query: 383 RI-IVVFGCG 391
           R+ I V G  
Sbjct: 358 RMKIAVLGDM 367


>gi|327399669|ref|YP_004340538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
 gi|327182298|gb|AEA34479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
          Length = 429

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 12/135 (8%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             E+I  L    +   R+  I   S DSR I+ G +FV I G + DG  F P+A+ +   
Sbjct: 5   LDEIIAVLKPKSISLDRDYTIKGFSIDSRAIKEGEVFVGIKGERFDGTDFAPEAVKKSKT 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             +V               + P ++V+N    L   A+    K     +A+ G+ GK++ 
Sbjct: 65  FAIVEKKV-----------DCPHIIVNNALGALKRLATYKLKKSGAISVAIVGSVGKTTT 113

Query: 130 ASFVQQICQRSGLSS 144
              V           
Sbjct: 114 KELVADFLSCRYSVC 128


>gi|156502247|ref|YP_001428312.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290954334|ref|ZP_06558955.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312242|ref|ZP_06803040.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|156252850|gb|ABU61356.1| UDP-N-acetylmuramyl tripeptide synthase with glutame ligase domain
           [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 940

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 120/374 (32%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPASAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  L       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVKSIVVEA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   G+ I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIMNMEFAGKKICVLASPGDRRDED 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEK---IRAE--IIHGI--PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R   P++   I  E  I  GI         +  EA+ 
Sbjct: 793 IAELAKTATPYYDYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNIEIIESEKEAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M  + D++V+
Sbjct: 853 AALNMAEEGDLVVI 866


>gi|256419275|ref|YP_003119928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
 gi|256034183|gb|ACU57727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
          Length = 438

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 122/363 (33%), Gaps = 28/363 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +D+R ++AG IF A+ G   +G+ +   A+ +GA   VV            + +N  
Sbjct: 27  SVQTDTRQLKAGDIFFALKGPNFNGNTYAAAALEKGAVFAVVDEEAYYTQPDKMMLTN-- 84

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                +  + L   A R         LA+TGT+GK++    V  +   +  ++   G  +
Sbjct: 85  -----DALETLQQLALRHRQSLNIPFLAITGTNGKTTTKELVSTVLASAFKTTATAGNLN 139

Query: 152 TISSFAQDNRLTTPSP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                            + + +  +    +   +  V   +HG+               T
Sbjct: 140 NHIGVPLTILRIPADAEMAVIEMGANHEHEIEAYCKVALPTHGI--------------IT 185

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G+ H++   + +    AK  L++ L   +    +  +  Y  ++ K          + 
Sbjct: 186 NIGKAHLEGFGSPEGVRRAKGELYDFLRNNKGTVFVCNEYPYLVDMSKGIQTVITYGEAA 245

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                               V ++           L G +   N + A  + +  G+ + 
Sbjct: 246 ADYTGQPLADSALL-----SVKVTGHEGIGQIDSQLVGAYNFPNIMAAVAVGLHFGVPAE 300

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   +        R + +        I   Y    +S++  + N   IT+ + +++ G 
Sbjct: 301 KIQHAISSYVPSNNRSQVMKQG-SNTIIMDAYNANPSSMKAAIDNFAGITAEKKVLLLGG 359

Query: 391 GGD 393
             +
Sbjct: 360 MME 362


>gi|107021634|ref|YP_619961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688579|ref|YP_834202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891823|gb|ABF74988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646668|gb|ABK07309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia HI2424]
          Length = 468

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 139/411 (33%), Gaps = 27/411 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                       N VS+DSR + AG +FVA+ G + D H F+          +    A +
Sbjct: 15  GATVHGDAGVTFNRVSTDSRTVGAGDLFVALKGERFDAHDFLGD--------VAARGAAA 66

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P++    TR  L   A     + P  ++AVTG++GK++V   +  I  
Sbjct: 67  ALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++     +++           P+ L +  +      +  + +          R
Sbjct: 127 AAVGADARLATAGNLNNDV-------GLPLTLLRLSAAHRLAVIE-IGMNHPGETEVLAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L           N  R+H ++  T  A            LP +  A+  ADDAY+     
Sbjct: 179 LTA--PTVALVNNAQREHQEFMATVDAVALEHA-AVIHALPPDGVAVFPADDAYAGIWRV 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A        ++    +    + V    +  ++ I              GE    NAL A
Sbjct: 236 AATGNRILDFALHDAERQNDAQ-VVGRMHGGELAIDTPAGAVTVRLRALGEHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR--GGRIYVD--YAHTSNSLEMILK 374
               +  G+  + + + LE    V GR +    +    GG   VD  Y    +S+   + 
Sbjct: 295 TAAALGAGVALSAIRQGLEAFEPVKGRLQVKQASVGSLGGATVVDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
            +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 355 VLAAHPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 489

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 141/399 (35%), Gaps = 36/399 (9%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           ++ V  DSR +  G +F A+ G   DGH ++  A  +GA   VV  A             
Sbjct: 42  VSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFGRGAAGAVVEHACFG---------- 91

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P ++V NT   L         +    I+ VTG++GK+ V   +     R+         
Sbjct: 92  -PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGVKEALYAALDRA--------S 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                   +        P+ LA+  +           +  +  G        ++      
Sbjct: 143 RGRAHRSVKSYNNHVGVPLSLARMPAR---TSFGVFEMGMNHAGELAALTRLVRPHVAIV 199

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   HI +   ++A  +AK  +FE  L     AII AD+ + + +  +A     RV+S
Sbjct: 200 TTIAPAHIGHFAGEEAIADAKAEIFEG-LEPGGVAIIPADNRHFEHLRAKATLHAERVIS 258

Query: 270 VG--YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G         L  V A      VT  + G+   +    PGE  V N+L       AIG 
Sbjct: 259 FGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAVMAAVEAIGG 318

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGR-------IYVDYAHTSNSLEMILKNIRTIT 380
           D       L ++  + GR       + GG        I   Y     S+ + L+ +    
Sbjct: 319 DLGAAGLALAEMEGLAGRGARHAIPAHGGDGSGSALLIDESYNANPASMAVTLRQLGQTP 378

Query: 381 SGRIIVVFGCG----GDRDQGKRPIMGKIALDLADIAIV 415
           + R + + G       D  +    + G +A    D  I+
Sbjct: 379 AARRVAILGAMRELGADEARYHAELAGPVAEGKVDRLIL 417


>gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 821

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 119/366 (32%), Gaps = 27/366 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAG--WIFVAIVGNKEDGHL 58
           MK++   +   P ++N         ++  I  +  DSR+  +    +F+AI G + DGH 
Sbjct: 1   MKIE---FSSLPTILNG--EICQLQKDYTIENIFIDSRNAVSNIKNLFIAIKGERHDGHN 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI    + G    ++     +  +             +N+   L   A         N++
Sbjct: 56  FIADLYSNGIRNFIIDEEIKVDKYPEAN-----FFKTENSINALQALAGYKRKNFKGNLI 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK+ V  ++ ++ +               S  + ++++  P  +          
Sbjct: 111 GITGSNGKTIVKEWLAKLIESVYSV--------YRSPRSYNSQVGVPLSL-----WHLNH 157

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            Q    +    S  G  +     IK   G +TNLG  H +   + +   + K +LF++  
Sbjct: 158 YQDYAIIEAGISKMGEMEKLEAIIKPKIGIYTNLGTAHDEGFPSLEEKAHQKAQLFKDSS 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                            + K                   +  +    +N   + I  E +
Sbjct: 218 TIIFCKDFPEISNALHSLPKLEEKEFIGWSFEDNTS--NYFVETEGRNNGTAIRIPFEEQ 275

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F  P      + N      L +  G+   ++   L  +  +  R E     +    +
Sbjct: 276 FHIFQVPFQDYASLENITHCLLLLLHEGLPIKVIQNTLNDIKSLNMRLETKKGKNSTYLV 335

Query: 359 YVDYAH 364
              Y +
Sbjct: 336 DDSYNN 341


>gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
 gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
          Length = 451

 Score = 93.4 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 157/441 (35%), Gaps = 35/441 (7%)

Query: 36  DSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           DSR  Q G  FVA+ G K DGH FIP  +A+G   IV  +A   +++S+       IL  
Sbjct: 23  DSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFILTP 82

Query: 96  DNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +     L+  AS            +A+TG+ GK+S  +  + + +         G  +T+
Sbjct: 83  ERCEYGLASLASVYLKSLERLRETVAITGSVGKTSAKNDTKALLEGYFKIHAAAGNYNTL 142

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                         + +    +  +   V  + + A+  G        +     + T + 
Sbjct: 143 ----------IGCAVTVL---AAPADTEVVLLEMGANHRGEIAEMTRYLPPTIAAVTEVA 189

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             H++   + +    AK  +F     + +           +    R              
Sbjct: 190 PAHLENFGSLEGVLQAKTEIFASENLRCAVINGDNGMLCKRAEELRLPEVIRFGRRGEVL 249

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
               HL         + +   ++G  F+   PL G  Q+Y    A  +   +G+ S  + 
Sbjct: 250 FAREHLSWEKDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGRLGLSSREIA 309

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGG 392
             L K     GR E   + S    +   Y  +  +++  L  + +    GR  ++ G   
Sbjct: 310 ASLPKCRNSAGRGEIRLSESGAAILDECYNASPAAVKASLAAMDSADIPGRRFLILGEML 369

Query: 393 DRDQGKRPIMGKI---ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
           +         GKI   AL ++D+  +       E+ +      + G   +    + I+A+
Sbjct: 370 ELGTASVSEHGKIFERALRVSDLLYL-----FGEEWKN-----VDGTADYYY--DSIDAL 417

Query: 450 RTAIEMLNK--QDVLVVAGKG 468
             A++       DV++V  KG
Sbjct: 418 IEAVDGTRPGEGDVILV--KG 436


>gi|320093979|ref|ZP_08025806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979085|gb|EFW10601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 468

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 88/469 (18%), Positives = 149/469 (31%), Gaps = 43/469 (9%)

Query: 15  INQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           I + +   +   +   N  V +DSR    G ++VA  G   DGH ++  A   GA   +V
Sbjct: 8   IAEATRGVVHGPDVSANGPVVTDSREAAPGGVYVARRGENADGHDYVASAARAGAVCALV 67

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSV 129
                L D           +VV +    L   A             +++AVTG+ GK++ 
Sbjct: 68  ERVVDLSDCPP-----ITQVVVGDATGALGDLARAHLEALRAGGAIDVVAVTGSVGKTTT 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              + Q+      +             + +N +  P  +  A       S     + + A
Sbjct: 123 KDLLLQVLSADAPTV--------APRLSFNNEVGLPLTVLTA-----DESTRHLVLEMGA 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G   +              +G  H+    +      AK  L E    + + A++ AD
Sbjct: 170 SGPGHIAYLTRIAPPDVAIELVVGHAHMGGFGSVAGVAEAKAELIEGS-RQGATAVLNAD 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +  RA     R    G     +          +   T++           L G 
Sbjct: 229 DPNVAAMAPRAKGPVVRFSPSGVGADVVAEDVRVDAAGRASFTLAAPEGREPVSLSLVGA 288

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR---IYVDYAHT 365
             V NAL AA    A+G+   L+   L       P R +  G          I   Y   
Sbjct: 289 HHVANALAAAAGARALGLGLPLIARALSGARALSPHRMDVRGLRIGAVPLTLIDDSYNAN 348

Query: 366 SNSLEMILKNIRTITSGRI-IVVFGCG----GDRDQGKRPIMGKIALDLADIAI-VTDDN 419
            +S+   +  +  I  GR  I V         D     R +   ++    D  I +  D 
Sbjct: 349 IDSMRAAVAALEAIGKGRRTIAVLSEMLELGEDSPATHRAVGAMLSGAGVDALIGLGRDA 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +E    +P  +   +   A+   ++ L    V++V  KG
Sbjct: 409 HYY-------SEGAASVPDRVLVEDPGAALAAVLDRLTDDCVVLV--KG 448


>gi|171316203|ref|ZP_02905426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
 gi|171098617|gb|EDT43414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
          Length = 468

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 144/409 (35%), Gaps = 31/409 (7%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
               +     VS+DSR +  G +FVA+ G++ D H F+            V++  +    
Sbjct: 19  HGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGD----------VAARGAAAAL 68

Query: 83  SATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            A + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I   +
Sbjct: 69  VAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNGKTTVKEMIASIFAAA 128

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
             +  ++     +++           P+ L +         +  + +          RL 
Sbjct: 129 VGADARLATAGNLNNDI-------GVPLTLLRLSGAHRVAVIE-LGMNHPGETEILARLA 180

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N  R+H ++  T +A            L  +  A+  ADDAY+      A
Sbjct: 181 A--PTVALVNNAQREHQEFMATVEAVALEHA-AVIHALTPDGVAVFPADDAYAGIWRVAA 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   ++    + +  + V    +  ++ I              GE    NAL AA 
Sbjct: 238 TGNPILDFALHDAERQVEAQ-VTGRLHGGELAIDTPSGAVTVRLRALGEHNARNALAAAA 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILKNI 376
             +A GI+ A + + LE    V GR +    +     G  +  D Y    +S+   +  +
Sbjct: 297 AALAAGIELAAIKQGLESFEPVKGRLQVRQADIGSLAGATVVDDTYNANPDSMRAAIDVL 356

Query: 377 RTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
               + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 357 AAQPAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
 gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
          Length = 825

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 134/385 (34%), Gaps = 26/385 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +        + KI  V +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 4   TIEKVTTLIGARRFGASDAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV     +    AT  +    L V ++ + L   A R   +    I+ +TG++GK+
Sbjct: 64  VRNFVV---TEVPADYATEYAEANFLKVVDSLEALQRLAERHRDEFNIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  ++L           V     
Sbjct: 121 MVKEWLNQLLCDDMFIT--------RSPRSYNSQVGVPLSVWL-----LNEHTQVGIFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+      TNLG  H +   +++     K+ LF          +  
Sbjct: 168 GISQPGEMLALRDIIQPTIAVLTNLGDAHQENFISKEMKCKEKLILF----HDAKTVVYN 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            DD      +    +     L    + K     +K V        VT   +G +  +  P
Sbjct: 224 GDDPIVNGCVNELEDFKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH- 364
              +  V N+   A + + +G+   ++ E +++L  +  R E          I   Y   
Sbjct: 284 FIDDASVTNSFACAAVALTLGVGVDVLDERMQQLEPIAMRLEVKQGQHGCTLINDSYNSD 343

Query: 365 -TSNSLEMILKNIRTITSGRIIVVF 388
             S  + +   N R    GR   + 
Sbjct: 344 INSLDIALDFMNRRPDHQGRRHTLI 368


>gi|225619677|ref|YP_002720934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225214496|gb|ACN83230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 450

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 131/418 (31%), Gaps = 39/418 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61
           L+D+I                    +++  +S+DSR       +F+AI G K DG+ F  
Sbjct: 6   LKDIIAVTKELNSKCFKNIEDLNLNKELE-ISTDSRDNFDENKLFLAIKGEKFDGNKFAL 64

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +   +G    ++S      D S  +  +  +   D+T  F    A     +    ++++T
Sbjct: 65  ETYNKGCRYFILS------DASIKLPDDAVVFYADDTILFFIKLAREYRRRFNIPVISIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++              +    G  +                  +A   + ++ + 
Sbjct: 119 GSCGKTTTKELTHLFLSTKYKALKTEGNLNN-EIGVPKTIFNLDDSYEIAVIEAGMNHEN 177

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                 EA            I+       N+   HI Y  + +    AK  LF       
Sbjct: 178 ELLRISEA------------IEANTVIINNVEPVHIAYLGSIENIAYAKSELFNHTR--- 222

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                      +  V+ +  N    +     +    ++ +       ++   + E     
Sbjct: 223 ---------ENANAVINKNTNCIDILEKEASRNNIKNIIEADIKEIIKKDDNTFEYNGIT 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   L G+F ++N L A        +D     + L        R + +            
Sbjct: 274 FKHNLIGDFNLHNVLSALKAAELYDVDLQKCADILITYESQKNRMQIINIKGCNVINDC- 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDL--ADIAI 414
           Y     +L+ ++K +   +  + I V G   +    +      +GKI  +L   D  I
Sbjct: 333 YNSNPAALKNMIKFLSQRSESKKIAVIGDMLETETENSSYHKDIGKIINELKNIDTVI 390


>gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108]
 gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108]
          Length = 831

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 132/361 (36%), Gaps = 24/361 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              ++  +    +      I+ + +DSR +      +F A+   + DG  +IP   A+G 
Sbjct: 5   IENIVEIIGAQRIGNVSATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYARGV 64

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
              VVS      + +Q FS +  S    LVV N  K L   A +   +    ++ +TG++
Sbjct: 65  RNFVVSKESMKRFDVQPFSGSQFSTANFLVVSNPLKALQKLAEQHREQFQVPVIGITGSN 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+ V  ++ Q+     +           S  + ++++  P  +            G+  
Sbjct: 125 GKTIVKEWLHQLLSAERVIV--------RSPRSYNSQIGVPLSV-----WQMNEQSGLAI 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+         
Sbjct: 172 FEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFK----NCDVV 227

Query: 245 IIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           I   DD +    V K   +A     S     + +++ KV    +   ++      D  F 
Sbjct: 228 IYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLYIGKVEKKDDCTVISYRYLDMDNTFT 287

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P   +  V N+L     C+ + + +  + E + +L  V  R E     +    I   Y 
Sbjct: 288 LPFIDDASVENSLNCLAACLYLMLPAEKITERMGRLEPVAMRLEVKEGKNGCVLINDSYN 347

Query: 364 H 364
            
Sbjct: 348 S 348


>gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
 gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
          Length = 451

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 79/456 (17%), Positives = 157/456 (34%), Gaps = 59/456 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL         ++ +          +     ++V++DSR  +   IF+A+ G+K DG  
Sbjct: 1   MKLH------IRDIKHLFIKSNDLADDLLFDSSDVNTDSRTFKDNEIFLALEGDKFDGSN 54

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI   + Q     + +              N    VV++ +KFL   +  +  K     +
Sbjct: 55  FIDDVLKQKPLFFITNKEQKY---------NARYAVVESGKKFLIELSKLILKKLSLTKV 105

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GK++    +    +        +           +N +  P  I     L    
Sbjct: 106 AITGSNGKTTTKDLIVHFLKNKFNDDAVLFTKG-----NYNNEIGLPLSI-----LQSQG 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +      +  +  G   H  D I+      TN+G  HI    +++     K ++F  L 
Sbjct: 156 VEKFAVFEIGTNHPGEIIHLADIIRPNISIITNIGDAHIGNFGSKEKIAEEKKQIFNFLK 215

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             E   +    D    +++ ++      + +       +  K          + ++ + +
Sbjct: 216 TNELKIL--NKDDEYFQILNQSPGKTFCISNNNDDSDVLSFKSCELNM----IELTHKFQ 269

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                F L G+  + N  +A    I IGID   + ++   L    GRF+          I
Sbjct: 270 SIKIKFQLTGQHNLQNFAIACAALINIGIDFQELEKYFGNLESTNGRFKKYIFKDNIELI 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
              Y    +SL   + ++      +I+++    GD        MG++         +TD 
Sbjct: 330 DDSYNSNPSSLISAIDHLNQSEKNKILII----GD--------MGELGQ-------LTDQ 370

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                   +I  EI+             +A + AI+
Sbjct: 371 YH-----LQIIEEILK--TKINIVLTMGKAFKAAIK 399


>gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
 gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
          Length = 609

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 140/391 (35%), Gaps = 43/391 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N+L IF    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 172 NLKDFSEILKREKLNEL-IFEEFSKKVQIKNVVMDSRKVTEGSLFFAI----NNGNSYVK 226

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +GA  +V  +         T   +  ++ V +T   +   A++   K    ++ +T
Sbjct: 227 DVLDKGASLVVADN---------TNIKDKRVVKVIDTIATMQDLATKYRKKLDIQVVGIT 277

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    V  +      +    G  +            T               + 
Sbjct: 278 GSNGKTTTKDIVYSLLSTKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 324

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E      
Sbjct: 325 FVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEF----- 379

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                   D  +  V       G   ++     +    K      + +     ++GK+++
Sbjct: 380 -------VDKKNTFVCGDDEYLGKLDVNKVGFNENNDYKIESYEFSNKGSKFVLDGKEYE 432

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G+  + N  +   L   IG+    + + L+++ +   RF+ +        I   
Sbjct: 433 MSL--LGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKIG-EDIYINDA 489

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCG 391
           Y  +  S++  +  +  I + +  I + G  
Sbjct: 490 YNASPMSMKAAIDTLNEIYNDKYKIAILGDM 520


>gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 479

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 87/467 (18%), Positives = 165/467 (35%), Gaps = 39/467 (8%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           +I  +         R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV
Sbjct: 12  IIAAMGAAVQGTPARDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAALKAGAALAVV 71

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
            +A   +        + P+L+VD+    L         +    ++AVTG+ GK+S    +
Sbjct: 72  ETAQRGK-----FAPDAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTSTKEAL 126

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           + +    G +   +   +               P+ LA+  + +         +  +  G
Sbjct: 127 RGVLGAQGETHASVASFNNHWGV----------PLTLARCPASVR---YAVFEIGMNHAG 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             +  +  ++      T +   H+++    +A  +AK  +F  L P     +   +  + 
Sbjct: 174 EIEPLVKMVRPHLAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEPGGIAVLNRDNPMFK 233

Query: 254 KEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           +           R++S G   K    L+ +    +   V  S+ G D  +   +PG    
Sbjct: 234 RLTASARKAGVERIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIA 293

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSL 369
            N+L        +G D AL    L ++    GR         +G    +D  Y     S+
Sbjct: 294 MNSLAVLAAADLVGADLALAALALAQVEPAAGRGVRRTLELGQGAATLIDESYNANPASM 353

Query: 370 EM---ILKNIRTITSGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRS 422
                +L +      GR I V G   +         R + G +  +  D+       P  
Sbjct: 354 AAALGVLGSAEISGQGRRIAVLGDMLELGPAGPELHRGLAGTVQSNAVDLVFCC--GPLM 411

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
            +   +   +  G  G   +     A+    +  +   DVL++  KG
Sbjct: 412 HN---LWDALSSGKRGGYAET--AAALESQVVAAVRSGDVLMI--KG 451


>gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 482

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 87/488 (17%), Positives = 160/488 (32%), Gaps = 60/488 (12%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           +      E +   +   +   ER I+  S D+R +Q G +F AI G+  DGH F+P A+ 
Sbjct: 1   MTALWTREELESATGGCLTGAERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDALG 60

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPENILAV 120
           +        +A      +  + ++ P+L V           +    +    +    ++AV
Sbjct: 61  R-----GAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAV 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG+ GK+     ++ +    G +       +               P+ L +        
Sbjct: 116 TGSVGKTGTKEALRHVLSEQGETHASAASYNNHWGV----------PLTLTRMPRSARYG 165

Query: 181 GVTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                     +HG +   L   ++      T +   HI++  +  A  +AK  +F   L 
Sbjct: 166 VFEIGM----NHGAEIVPLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSG-LR 220

Query: 240 KESPAIIYADDAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               AI+  D  +   +   A    AG  V    +    +   K+    +   +  +V G
Sbjct: 221 PGGVAILNRDAPHFDRLAAHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMG 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +   +     G     N+L    +  ++G D A     L  L    GR E       GG 
Sbjct: 281 QPVTYKLGTAGRHAALNSLGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGT 340

Query: 358 IYV---DYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRPIMGKIALD 408
            Y+    Y     ++   L  +  I     GR I V G     G         + +    
Sbjct: 341 AYLVDESYNANPVAVRAALATLAGIETGPRGRRIAVLGDMLELGAAAPDLHRGLAEAIEA 400

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNK-------QD 460
                + T           +   +   +P      +R  A+  TA ++L          D
Sbjct: 401 ARVDLVFT--------AGPLMRNLFEALP-----VSRRGAVADTAADLLEPLARTLRSGD 447

Query: 461 VLVVAGKG 468
            ++V  KG
Sbjct: 448 AVMV--KG 453


>gi|228471274|ref|ZP_04056080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
 gi|228306916|gb|EEK16014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
          Length = 456

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 118/350 (33%), Gaps = 15/350 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + + +D+RH++   +FV++ G   DG+ F   A+ QG +  +V     +           
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAADALKQGCKYALVDDLSYIDAVEEADLRER 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I   D   + L   A     K     +A+TGT+GK++    V  +           G  
Sbjct: 78  LIYYKDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQGNY 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +             P                   V + AS  G         +   G  T
Sbjct: 138 NNEIGVPLTLLQVRPE-------------HQFVIVELGASHIGDIASLCKLAQPQYGIIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+GR H+    T +    AK  L+  L   +  A    +D      +           S 
Sbjct: 185 NVGRAHLSGFGTPEGVVKAKSELYAYLREHDGQAFCNGEDKTLISNLNGLPTVYYNGTSS 244

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 +          K +      G+ +     L G++ + N L A  + +  G+D  
Sbjct: 245 PRITGSVLPTD-ETGLLKIEWRDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPK 303

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI 379
            + E +        R + +   ++G R+ +D Y    +S+E+ L +  T+
Sbjct: 304 TINEAVTNYQPHNERSQVLPPTAQGNRVILDCYNANPSSMEVALNSYFTM 353


>gi|56459543|ref|YP_154824.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178553|gb|AAV81275.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 467

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 125/385 (32%), Gaps = 27/385 (7%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             +  I+ VS+D+R      +F+A+ G   D H F+ Q          ++   +      
Sbjct: 19  GSDCTIDAVSTDTRADLTDALFIALKGKNFDAHDFVEQ---------AIAKGAAAIICEK 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            + S    ++V+N+R  L    + +  K     +AVTG++GK++V   +  I        
Sbjct: 70  KVDSECRQIIVENSRHALGRLGAAIKAKVAPKTVAVTGSNGKTTVKEMLAAILSIRHPVL 129

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G  +               P+ L              V + A+  G   +  D +K 
Sbjct: 130 ATQGNFN----------NDIGVPLTLL---RLQEEHKYAVVELGANHPGEISYTTDLVKP 176

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+   H++   +      A        +  +  AI   D  +     +   +  
Sbjct: 177 DVAILNNVSAAHVEGFGSLHGVARA-KTEIFRGVGGQGTAITPRDSEFYPCWQRACSDMQ 235

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +   +                     T+ + G+       L G   V NAL AA     
Sbjct: 236 WKTFGLSDSADVYASDVTLNSEGHPSFTLHLGGETKQLELKLSGRHNVLNALSAAAAASE 295

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +GI    +   L+++    GR   +  +     I   Y  +  S +  L  + +    R 
Sbjct: 296 LGISLNDIANGLQQVQPAQGRLTTIKVSDHLRIIDDTYNASVASTKAALDLLGSYQGYR- 354

Query: 385 IVVFGCGGDRDQGKRP---IMGKIA 406
           I V G  G+     R     +G+ A
Sbjct: 355 IFVLGDMGELGADARAYHEDIGEHA 379


>gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
 gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
          Length = 451

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 87/462 (18%), Positives = 152/462 (32%), Gaps = 46/462 (9%)

Query: 10  DFPELINQLSIFPMQWRERKI----NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
              +LI  L   P    E  +    + + +D+R I+ G +F+A  G K DGH F+  AIA
Sbjct: 6   TLNQLIEVLLARPFNISEAALAQVSSGIQTDTRIIKPGEVFLAFRGEKFDGHEFVQTAIA 65

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A +V   Y             P+L V NT +           +    ++ VTG+ G
Sbjct: 66  NGAIAAIVDDDYE--------NPGFPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSVG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +          +  +G    I     +       P  L +  +         +
Sbjct: 118 KTTTKELI----------AAVLGTKGNIHKTYGNFNNEIGVPKTLLELNAE---HDYAVI 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +     G             G  TN+G  HI+   +++A   A        +PK+S AI
Sbjct: 165 EMAMRGRGQIAELTQIANPTIGVITNVGTAHIELLGSEEAIAEA-KCELLAEMPKDSVAI 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D+        +  +       +        L     +                   P
Sbjct: 224 LNHDNPLLMATAGKFWSGEVLTYGLSGGDIQGSLVDNAIVEVAG----------LRLPLP 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N L A  +   +GI+ + +      +++  GR +     +    +   Y   
Sbjct: 274 LPGRHNATNYLAALAVAKVLGIEWSSLQ-AGVSVNMPTGRSQRFSLPNDVLILDETYNAA 332

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPR 421
             ++   L+ +      R I V G     G+R       +G+   +L  D  +V  D   
Sbjct: 333 PEAMLAALQLLADTPGKRKIAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVD--- 389

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            ED E I      GIP         + +      +   D ++
Sbjct: 390 GEDAEAIAKS-AEGIPS-ECFATHADLVARLTTFVQGGDRVL 429


>gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 840

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 131/367 (35%), Gaps = 24/367 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQA 63
           ++      ++ +     +  +   I+ + +DSR +      +F AI   + +G  +IP  
Sbjct: 9   IMSYTIESIVEKTGARRLGNKPATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDL 68

Query: 64  IAQGAE-AIVVSSAY-----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
             +G    +V S  +       +    T+      L+V NT K L   + +  G     +
Sbjct: 69  YERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPV 128

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK+ V  ++ Q+     +           S  + ++++  P  +         
Sbjct: 129 IGITGSNGKTIVKEWLHQLLSPDRVIV--------RSPRSYNSQIGVPLSV-----WQMN 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +       S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+  
Sbjct: 176 EESELGIFEAGISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFK-- 233

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +       ++  S  V K    A     S+    + +++ +V    +   ++     
Sbjct: 234 -DCDVVIYNGDNEMISNCVGKSMLTAREIAWSMKDIERPLYISRVEKREDHTVISYRYLE 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D  F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +    
Sbjct: 293 MDNTFCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNCIL 352

Query: 358 IYVDYAH 364
           I   Y  
Sbjct: 353 INDSYNS 359


>gi|255007708|ref|ZP_05279834.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis 3_1_12]
          Length = 831

 Score = 92.7 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 129/363 (35%), Gaps = 24/363 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               ++ +     +  +   I+ + +DSR +      +F AI   + +G  +IP    +G
Sbjct: 4   TIESIVEKTGARRLGNKPATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYERG 63

Query: 68  AE-AIVVSSAY-----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
               +V S  +       +    T+      L+V NT K L   + +  G     ++ +T
Sbjct: 64  VRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIGIT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+ V  ++ Q+     +           S  + ++++  P  +             
Sbjct: 124 GSNGKTIVKEWLHQLLSPDRVIV--------RSPRSYNSQIGVPLSV-----WQMNEESE 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
           +       S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+     +
Sbjct: 171 LGIFEAGISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFK---DCD 227

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                  ++  S  V K    A     S+    + +++ +V    +   ++      D  
Sbjct: 228 VVIYNGDNEMISNCVGKSMLTAREIAWSMKDIERPLYISRVEKREDHTVISYRYLEMDNT 287

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P   +  + N+L     C+ + + +  + E + +L  V  R E     +    I   
Sbjct: 288 FCIPFIDDASIENSLNCLAACLYLMVPADQITERMARLEPVAMRLEVKDGKNNCILINDS 347

Query: 362 YAH 364
           Y  
Sbjct: 348 YNS 350


>gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
 gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
          Length = 857

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 134/385 (34%), Gaps = 26/385 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +        + KI  V +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 36  TIEKVTTLIGARRFGASDAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIPELYRRG 95

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV     +    AT  +    L V N+ + L   A R   +    I+ +TG++GK+
Sbjct: 96  VRNFVV---TEVPADYATEYAEANFLKVVNSLEALQRLAERHRDEFNIPIVGITGSNGKT 152

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  ++L           V     
Sbjct: 153 MVKEWLNQLLCDDMFIT--------RSPRSYNSQVGVPLSVWL-----LNEHTQVGIFEA 199

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+      TNLG  H +   +++     K+ LF          +  
Sbjct: 200 GISQPGEMLALRDIIQPTIAVLTNLGDAHQENFISKEMKCKEKLILF----HDAKTVVYN 255

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            DD      +    +     L    + K     +K V        VT   +G +  +  P
Sbjct: 256 GDDPIVNGCVNELEDFKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLP 315

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH- 364
              +  V N+   A + + +G+   ++ E +++L  +  R E          I   Y   
Sbjct: 316 FIDDASVTNSFACAAVALTLGVGVDVLDERMQQLEPIAMRLEVKQGQHGCTLINDSYNSD 375

Query: 365 -TSNSLEMILKNIRTITSGRIIVVF 388
             S  + +   N R    GR   + 
Sbjct: 376 INSLDIALDFMNRRPDHQGRRHTLI 400


>gi|111221626|ref|YP_712420.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
 gi|111149158|emb|CAJ60841.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
          Length = 467

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 127/433 (29%), Gaps = 33/433 (7%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR +  G +FVA+VG + DGH F              + A       A      P +VV 
Sbjct: 34  SRQVGPGTLFVALVGARSDGHDFAA-----------AAVAAGAPAVLAARPLGVPAVVVA 82

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +    L+  A+ +       ++AVTG++GK++    +  +    G +    G  +     
Sbjct: 83  DPSAALAALAAHVRDIARATVVAVTGSAGKTTTKDLLADLLAELGPTVAAPGSFNNEIGL 142

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 T P                   + + A   G         +   G+  N+G  H
Sbjct: 143 PLTLLRTEPD-------------TAFVVLEMGARGLGHIATLCAVARPSVGAVLNVGSAH 189

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +  +   +    A      E        I+ ADD     +  RA                
Sbjct: 190 VGEYTDGRLGIAAAKGELAEAAQDA--VILNADDPLVAAMAPRARGEVITFGEDAAADVR 247

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               +V  + +     ++   +    L  +           AA         +       
Sbjct: 248 GAGVRVDPLGHASFDLLAGGERHRVTLGLVGAHQVPNALAAAAVALRLGLSPARTAAALG 307

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD-- 393
                   R E   T +    +   Y     S+   L  +  +   GR I V G  G+  
Sbjct: 308 AARARSRWRMEVTRTAAGVVVVNDAYNANPESMRAALATLVDMRGAGRAIAVLGGMGELG 367

Query: 394 -RDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                    +G++A+ L  D  I      R             G   +    +  EA+ T
Sbjct: 368 DAADDAHDALGRLAVRLGIDQVIAVGPAARRIHLAASLEGSWDGESRW--VADADEAVAT 425

Query: 452 AIEMLNKQDVLVV 464
            + +    DV++V
Sbjct: 426 VVALARPDDVVLV 438


>gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
 gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
          Length = 487

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 153/464 (32%), Gaps = 56/464 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   S D+R ++ G +F AI G   DGH F+  A+ +        +A   +  +    
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALEK-----GAGAAVVAEARAKEFE 79

Query: 88  SNTPILVVD--------NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              P+L V         +  + L L A    G     I+AVTG+ GK+     ++ +   
Sbjct: 80  GAGPVLAVPGEGEDPVLDAMRRLGLAARARTG---AAIIAVTGSVGKTGTKEALRHVLSA 136

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +   +   +               P+ L                +  +         
Sbjct: 137 QGATHASVASYNNHWGV----------PLTL---TRMPEDTRFGVFEIGMNHGAEILPLT 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++      T +   HI++ ++  A  +AK  +F   L     A+I  D+   + ++  
Sbjct: 184 AMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSG-LKPGGVAVINRDNPNYERLLAH 242

Query: 260 AH--NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           A    AG  +    ++   +   ++    +   V  +V G    +    PG     N+L 
Sbjct: 243 AQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGIPVTYQLGTPGRHVAMNSLG 302

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILK 374
                 A+G D A     L  L    GR E        G    VD  Y     S+   L 
Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALA 362

Query: 375 NIRTIT---SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +  I     GR I V G   +     +   R +   +A +  D+               
Sbjct: 363 TLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVF---------AVGP 413

Query: 428 IRAEIIHGIPGFI--EKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           + A +   +P  +        E +  A+   L   D ++V  KG
Sbjct: 414 LMAHLFEALPMPVRGTAAPTAEGVTDAVLATLRPGDAVMV--KG 455


>gi|148358647|ref|YP_001249854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
 gi|148280420|gb|ABQ54508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
          Length = 406

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 117/344 (34%), Gaps = 27/344 (7%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G + DGH FI +A A+GA A VV+                P  VV +    L+  A+   
Sbjct: 2   GERFDGHDFIKEAEAKGASAAVVNRLIDGVH--------IPQFVVVSPLMALAKIAAAHR 53

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +    I+A+TG++GK++V   +         S    G          +N +  P     
Sbjct: 54  QEMSCPIIALTGSNGKTTVKEMI--ATILPQPSHATKGNL--------NNHIGVPLS--- 100

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
              L+           + A+  G   H +  ++       N+   H++   +      A+
Sbjct: 101 --MLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGV--AR 156

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQ 289
            +         +   I  DD                +         I+ + +    H + 
Sbjct: 157 SKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKILRFSSLHPADIYAQDIRLDTHGRA 216

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             T+ +     +    +PG   V NAL AA  C A+GI    +   L     V GR   +
Sbjct: 217 HFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKGRMTML 276

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
              ++   I   Y     S+   L+ +     GR I VFG  G+
Sbjct: 277 SGQNQSTVIDDTYNANLRSVLTALEVLSG-RPGRKIFVFGDMGE 319


>gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
 gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
          Length = 417

 Score = 92.3 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 132/365 (36%), Gaps = 45/365 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V +D+R I+ G +F A+ G   DG+ ++ QA+ +GA   V S      + S T     
Sbjct: 12  KGVQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGAIHAVSSDHKWKNNPSVT----- 66

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
              VV++  K L   A+         I+++TG++GK++    +  +    G      G  
Sbjct: 67  ---VVEDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKELILSV---LGQQFNVKGTL 120

Query: 151 ST-ISSFAQDNRLTTPS---PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +       + +      I + +  +    +     ++    +GL            
Sbjct: 121 GNLNNHIGVPLTILSFDKSTEIGVVEMGANHLKEIEKLSTIALPDYGL------------ 168

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN G+ H++   +++     K  LFE L      AI+   D               +
Sbjct: 169 --ITNYGKAHLEGFGSEKNIIIGKSELFEHLKAHGKTAIVGHWD---------------Q 211

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                 QG    +    +   K +  IS+E +       L GE+  +N L+AA +     
Sbjct: 212 EQLKRSQGIERFITSTDSKLIKAEPYISLEFEGQKSDTQLIGEYNYHNMLLAAAVGQIFN 271

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +  +L  L +      R + + +++    +   Y    +S+ + L N+        I 
Sbjct: 272 MSTTSILNGLSQYTPNNNRSQIIQSDNVKIILDA-YNANPSSMSVALSNLSKQKESHKIA 330

Query: 387 VFGCG 391
           V G  
Sbjct: 331 VLGDM 335


>gi|255038732|ref|YP_003089353.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Dyadobacter fermentans DSM
           18053]
 gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053]
          Length = 824

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 130/365 (35%), Gaps = 22/365 (6%)

Query: 33  VSSDSRHIQ-AG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRS 88
           + +DSR +   G  IF AI G + DGH F+P+  A G    VV  A        +A    
Sbjct: 18  ILTDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVVEEAAFTGALRETAATWD 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +  I VV ++ + L    +    +    ++ + G++GK+ V  ++ Q+           G
Sbjct: 78  DAQIWVVSSSIRALQQLVASKRKQFDIPVVGIAGSNGKTIVKEWLVQLLS--------PG 129

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
            +   S  + ++++  P  +      +      +       S     ++    ++   G 
Sbjct: 130 RSIVASPKSYNSQIGVPLSV-----WNLSKEHSLAIFEAGISKAHEMEYLQPVMQPTIGI 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           FTN+G  H D  ++++     K+RLF ++         +  D     ++K  +     + 
Sbjct: 185 FTNIGPAHDDGFRSRKQKITEKLRLFTKVKKLIYRKDYHEIDEEISLILKPVNAFLETLS 244

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                             +K  ++++ +  +  F      +  + N        +  G++
Sbjct: 245 WGSNYSGSHVQVTFNPQKDKTVISLTGKLGNHTFETGFRDDASLENLTHCIVFLLDFGLE 304

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL---EMILKNIRTITSGRII 385
            A++ E +  L  V  R E            +D A+ ++       +    +     R  
Sbjct: 305 PAVIQERVLLLKPVSMRLELK--EGINHSYIIDDAYNNDLQGLAMALNFLAQQEQRNRKT 362

Query: 386 VVFGC 390
           V+   
Sbjct: 363 VILSD 367


>gi|305680934|ref|ZP_07403741.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659139|gb|EFM48639.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 496

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 81/490 (16%), Positives = 148/490 (30%), Gaps = 49/490 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK-INE-VSSDSRHIQAGWIFVAIVGNKEDGHLF---- 59
           +I     E+   +          + I   V  DSR + +G +FVA+ G K DGH +    
Sbjct: 1   MITLRLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAAAA 60

Query: 60  -------IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
                  +  A   G  A++V  A  +   S     +     V    + ++  A  +  K
Sbjct: 61  MDRGAAGVLAARPVGVPAVIVPPATEVDHHSYATEHD-TDGSVAAVLEGMAKLARYVVDK 119

Query: 113 HPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++ +TG++GK+S    V  I + +G +    G  +            T     
Sbjct: 120 LSARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCT----- 174

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                    +       + A S G   H         G   N+G  H+    ++      
Sbjct: 175 --------EATKYLVSEMSARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIART 226

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  L E  LP +  A++ ADD Y   +  R         ++    +           ++ 
Sbjct: 227 KGELVEA-LPADGIAVLNADDDYVAAMADRTSATVWSFSTLHKPVRVAATDIRLDNLSRP 285

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA------LVLEHLEKLHVVP 343
             T+                       VA  L  A    +A      +            
Sbjct: 286 TFTLIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSA 345

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCG----GDR 394
            R +     +    I   Y     S+   L+ +    +      R I V G       D 
Sbjct: 346 HRMDVHHAGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDA 405

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +M  +A    D+ +V   +   E+   +           I   +  +A    ++
Sbjct: 406 TADHVELMRTVAEQGIDLVVVVGTD---ENARAMINAAAAMGLRAIPTADTTQAATEVLK 462

Query: 455 MLNKQDVLVV 464
           +L + DV++V
Sbjct: 463 VLGRGDVILV 472


>gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
 gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
          Length = 479

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 153/454 (33%), Gaps = 41/454 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A   +       
Sbjct: 26  RDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVAAALNAGAALAVVEKAQRDK-----FA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           ++ P+LVVD+  + L         +    ++AVTG+ GK+S    ++ +    G +   +
Sbjct: 81  ADAPLLVVDDVLEGLRRLGIAARSRLSAKVIAVTGSVGKTSTKEGLRSVLGAQGPTHASV 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ LA+  + +         +  +  G  +  +  ++    
Sbjct: 141 ASFNNHWGV----------PLTLARCPAGVR---YAVFEIGMNHAGEIEPLVKMVRPHVA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHNAGC 265
             T +   H+++    +   +AK  +F   L     A++  D      +       N G 
Sbjct: 188 IITTVEPVHLEFFSGVEGIADAKSEIFSG-LEPGGIALLNRDTPMFDRLSANALRANVGR 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V           L  V    +   V  S+ G D  +   +PG     N+L        +
Sbjct: 247 IVTFGTDPAADARLLDVALHADCSAVHASILGHDVTYKIGMPGRHMALNSLAVLAAAELV 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILKNIRTIT-- 380
           G D AL    + ++    GR          G    +D  Y     S+   L  +      
Sbjct: 307 GADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANPASMAAALGVLGRAEIG 366

Query: 381 -SGRIIVVFGCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             GR I V G   +         R +   +  +  D+        R+        + +  
Sbjct: 367 AQGRRIAVLGDMLELGPTAGELHRGLEAAVRANGIDLVFCCGPLMRN------LWDALSS 420

Query: 436 IPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
                  G+   A+    +  +   D ++V  KG
Sbjct: 421 GKRGGYAGD-ATALESQVVAAIRAGDAVMV--KG 451


>gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 463

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/467 (14%), Positives = 149/467 (31%), Gaps = 39/467 (8%)

Query: 1   MK--LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+  L+++ +    +L+  +S   +      ++ VS+D+R +Q   ++V + G + DGH 
Sbjct: 1   MQKTLREITHWTRGKLVGGVSDPHLL-----VDGVSTDTRTLQRNNLYVPLKGERFDGHA 55

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F   A+  GA A + +    L           P++ V++T   L   A+    +    ++
Sbjct: 56  FWMDAVRAGAAAALWNREVPLPKDPP-----IPLIQVEDTLIALQELAAGYRRELEVKVV 110

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK++       I           G  +             P    +A     ++
Sbjct: 111 GITGSNGKTTTKDLTAAILATRYRVHRTQGNLNNHIGLPLTLLSMPPD-TEVAVVEMGMN 169

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
             G      + ++  L               TN+G  H+++  +      A      E+ 
Sbjct: 170 HAGEIARLSKIAAPDLAL------------VTNIGEAHLEFLGS----RGAIADAKLEIR 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                      D     + +R       V+ VG+            +  +  +  +    
Sbjct: 214 EGMPSTGTLIIDGDEPLLRERLAGEERPVIRVGFGESNDDRILDLELKGRAGIAFTSSAT 273

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           D  F   L G+    NAL+       +G+    + E L+       R E    ++    +
Sbjct: 274 DTRFETGLMGKHNALNALLGIQAARLLGLTETGIREGLKGAEGSGRRLETSTASNGMLVV 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLADIAI 414
              Y  +  ++   +  + ++       V        G +++     +G  A+      +
Sbjct: 334 DDSYNASPTAVRAAIDWLTSLEDYEEKWVLLGDMLELGVQEEALHREVGSYAVQQGIPRV 393

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQ 459
            T      E    I        P        +  EA+ T        
Sbjct: 394 FTL----GERARWISEGARAAAPDLPVTHFNSVEEAVNTLRRRGGPG 436


>gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
 gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
          Length = 821

 Score = 91.9 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 74/498 (14%), Positives = 169/498 (33%), Gaps = 56/498 (11%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
            +   E+ + +    +     +I+ + +DSR +      +F A+   + DGH +I +   
Sbjct: 2   SETIEEITSVMGAERIGNAPARIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIHELYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    VVS        +     +T  L V N  + L    ++   +    ++ +TG++G
Sbjct: 62  RGVRNFVVSDLPE----NGEAYVDTNFLKVANPLRALQRLVAKHREQFQIPVVGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+     + +         S  + ++++  P  ++L           +   
Sbjct: 118 KTIVKEWLYQLLSPERIIT--------RSPRSYNSQIGVPLSVWL-----LNEHTELGIF 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     I+   G  TN+G  H +   + Q     K++LF+     +    
Sbjct: 165 EAGISEMGEMEALRPIIQPTIGVLTNIGGAHQENFTSLQDKCMEKLQLFK---DCDVIIY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    A     S+    + + ++ +        +     G   ++  P
Sbjct: 222 NGDNELISSCVAKSLFTAREIAWSMKDTERPLFIESISKDETGTTIKYRYLGFFKEYRIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
              +  + N+L    + + + +   ++ E + +L  V  R E     +    I   Y   
Sbjct: 282 FIDDASIENSLNCLAVALYLMVSPEVIAERMLRLEPVAMRLEVKEGKNGCVLINDSYNSD 341

Query: 366 SN--SLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA----LDLADIAIVTDD 418
                + +     RT   GR   ++     +  Q  + +  ++A        D  I    
Sbjct: 342 FASLDIALDFMARRTEDKGRKRTLILSDILESGQVSKLLYRQVADLVHSRGVDRII---- 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                    +  EI      F  +     +  E + + +    + +V+++  KG      
Sbjct: 398 --------GVGEEISAYASRFEIEKQFFRSTNELLASGVLSGLRNEVVLI--KGA----- 442

Query: 475 VTNGEKKMSVDCDIIREI 492
                     D   + E+
Sbjct: 443 ----RVFHFDDITDVLEL 456


>gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 459

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 158/446 (35%), Gaps = 44/446 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R ++   +FVA+ G+  DGH     A+A+GA  ++                  
Sbjct: 25  HGVSIDTRTLEPADLFVALQGDNGDGHDHAEAALARGAAGVLAHRDGPG----------- 73

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P L+V++T   L         +    + AVTG+ GK++    ++      G         
Sbjct: 74  PRLLVNDTMSALQALGRFARDRFHGTVFAVTGSVGKTTTKEMLRTALAPFGPVHAAYASY 133

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +              S        S +   G+ H    A    L        +      T
Sbjct: 134 NNHWGVPLTLARLPESA------RSCVVEIGMNHAGEIAPLAALA-------RPHVAIIT 180

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            + R HI +  + +A  + K  LF   L  +  AI+ AD      +M +A      +   
Sbjct: 181 TVERSHIGHLGSIEAIADEKAALFSG-LAADGVAIMPADSPMLPRLMAQAAPHRV-MTFG 238

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 + L+++ A  +  ++ I V G+        PG     NAL A     A G D  
Sbjct: 239 TDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAALSAVDAAGFDPH 298

Query: 331 LVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITSGRIIVV 387
                LE  H + GR  +     + G  + +D  Y  +S S+   L  +R   + R IVV
Sbjct: 299 PAAAALENFHALAGRGAKRSIALNDGQAVLLDESYNASSASIRAALDVLRLTPASRRIVV 358

Query: 388 FGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            G     GD+   +   + +     AD+A       R      +   +   + G  E  +
Sbjct: 359 LGDILELGDQAVAEHAGLAQDIAACADLAFTCGPMMRH-----LFDALPASVRGAHEADS 413

Query: 445 RIEA--IRTAIEMLNKQDVLVVAGKG 468
              A  +  AI      D ++V  KG
Sbjct: 414 ASLAPVVSAAI---RDGDTILV--KG 434


>gi|296129439|ref|YP_003636689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
 gi|296021254|gb|ADG74490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
          Length = 476

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 139/460 (30%), Gaps = 32/460 (6%)

Query: 19  SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY 77
                      +   V +DSR ++ G +FVA+ G   DGH F          A    +A 
Sbjct: 15  GTLSATDPGHVVTGPVVTDSREVEPGGLFVALPGEHVDGHDF----------AAGAVAAG 64

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           +    +A      P +VV +  + L   A  +  +  +      G+  +    +      
Sbjct: 65  AALVLAARALPGLPCVVVPDVERALGDLARAVLARLRDAATLPGGSGLRVIGVTGSVGKT 124

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
               + +   G      +  +        P+ +              + + AS  G   +
Sbjct: 125 TTKDVLAQLCGAAGPTVAPVRSFNNEIGLPLTVL---RADEQTRFLVLEMGASGPGHLTY 181

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
             D           +G+ H+                    L  +  A++  DD   + + 
Sbjct: 182 LTDIAPPDVAVVLVVGQAHLGGFGGGIDAVARAKSEIVAGLLPDGVAVLNGDDPRVRAMA 241

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL---FPLPGEFQVYN 314
             A        +       +   ++ A+       + V G+D         L GE  V+N
Sbjct: 242 DVAPGRAVLFGAAPDAEVRVEDVRLDALGRATFRLVHVVGEDRHARDVALRLVGEHHVHN 301

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           AL AA   + +G+    V   L       P R   V        +   Y    +S+   L
Sbjct: 302 ALAAAAASLQVGLTLDEVAAGLTAADALSPHRMHVVDRADGVTVVDDSYNANPDSMRAAL 361

Query: 374 KNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           K +  I     R + V G     GD  +     +G++ + L     +T      E    I
Sbjct: 362 KALAVIAGRERRSVAVLGEMLELGDEHRTAHDAIGRLVVRL--NIGLTV--VVGEGARAI 417

Query: 429 RAEIIH----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           R    H    G    +       A   A + L   DV++V
Sbjct: 418 RDGANHEGSWGDEVVLVDDVDTAAAFLA-QELRAGDVVLV 456


>gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
 gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
          Length = 824

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 137/406 (33%), Gaps = 27/406 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+I Q+       +  +I  + +DSR +      +F A+  ++ DGH +I +   +G 
Sbjct: 5   IEEVITQIGAQRYGSKSAQIGFLLTDSRSLCFPEETLFFALKTDRNDGHHYISELYRRGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
              +V S     +            L V N  K L   A     +    I+ +TG++GK+
Sbjct: 65  RNFVVSSVPVDYEHLYPEAN----FLRVLNPCKALQRLAKCHREEFHIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +      ++    A    L                   V     
Sbjct: 121 MVKEWLYQLLSPQFFVTRSPRSYNSQVGVALSVWLLNEE-------------TQVGIFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G        I+      TN+G  H +   + +     KM L    L      +  
Sbjct: 168 GISEPGEMAALQHMIQPTIAVLTNIGDAHQENFASMEDKCREKMIL----LKDAEILVYP 223

Query: 248 ADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           ADD   ++V+  +   G +   S+  +    ++K V        +T      +  F  P 
Sbjct: 224 ADDPIIQKVVNDSDLRGKKLAWSMSDKSAPFYIKTVEKKATMTTITYVYHEHEDWFSIPF 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH-- 364
             E  V +A+  A + + +G+  + + E +++L  V  R E          I   Y    
Sbjct: 284 IDEASVADAIECAVVALEMGMSMSALDERMQQLEPVAMRLEVKEGQHGCTLINDSYNSDI 343

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            S  + +   N R     R   +     D+   +   + K   +LA
Sbjct: 344 NSLDIALDFMNRRPDQQNRSRTLIISDIDQSGRQPSELYKEVSNLA 389


>gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
 gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
          Length = 510

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 167/501 (33%), Gaps = 68/501 (13%)

Query: 6   LIYKDFPELINQLSI-FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     ++ +++ +  P    +  ++ V  D+R I+ G +FVA+ G + DGH F     
Sbjct: 1   MIALTLAQIADEIGVPVPAGAADVLVSSVEFDTRRIRPGALFVALRGERVDGHDF----- 55

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN----------TRKFLSLFASRLYGKHP 114
                A   ++       SA + +  P+L V +                   + L  +H 
Sbjct: 56  ----AATAAAAGAVAVLGSAPVSAPLPLLQVPDRPDNAGVLDALAALARASVTALVREHG 111

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL---A 171
             ++ VTG+SGK+S    +  + +         G          +  +  P         
Sbjct: 112 LQVVGVTGSSGKTSTKDLIAAVLRA------VPGT-------GPERVIAPPESFNNELGH 158

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
              +  + +    + +E S+ G        R+  +++  G+  N+G  H+    + +A  
Sbjct: 159 PYTALRADESTAFLVLELSARGAGHIAALARVAPLRI--GAVLNVGSAHLGEFGSVEAIA 216

Query: 228 NAKMR-----LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            AK             P      I   D      M     A   ++  G   +       
Sbjct: 217 QAKSELVQSLPPAGAQPLTGGVAILNADDALVAAMAELTAAEVVMVGTGAAAQVRATDVG 276

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV- 341
               ++ + T+            + G  Q+ NAL AA +  A+G+    +   L +    
Sbjct: 277 QDDADRARFTLVTPEGSAPVTLRVVGAHQIGNALTAAAVGRAVGLGPQAIARALSQAEPA 336

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQG 397
              R E     +    I   Y    +S++  L ++ TI  GR    V G     GD    
Sbjct: 337 SRWRMEVTELANGVTLINDAYNANPHSMKAALHSLSTIGRGRRTWAVLGEMAELGDEATA 396

Query: 398 KRPIMGKIALDL-ADIAIVTDDN-------------PRSEDPEKIRAEIIHGIPGFIEKG 443
               +G++ + L  D  +V +               PR+            G        
Sbjct: 397 AHDQIGRLVVRLGVDRLLVVEGPGAATGAAVGGRTAPRALHLGAHLEGSWGG--ESELVP 454

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +  +A+   ++ L   DV++V
Sbjct: 455 DVDDAVAILLDELEPGDVVLV 475


>gi|212550421|ref|YP_002308738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548659|dbj|BAG83327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 430

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 130/391 (33%), Gaps = 31/391 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++++SR      +F A+ G K DG+ +I +A+  GA   V             +  N  I
Sbjct: 16  ITTNSRICPTNSLFFALRGEKFDGNDYIMEALMSGAIYAVGDRN--------DLPENERI 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V N  + L   A+         I+A+TGT+GK++    +  +      + +     + 
Sbjct: 68  IKVGNVLQTLQSLANYHRKLMNAKIIAITGTNGKTTTKELIATVLSSKYKTLYTQENLNN 127

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L +  S         + + AS     +      +   G  TN+
Sbjct: 128 Y----------IGVPLTLLRLNSE---HQFAVIEMGASHVNEIRMLCQIAEPDYGIITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H++   +      AK  L++ +  K        D+     ++ +       V+  G 
Sbjct: 175 GKAHLEGFGSLDGVVKAKTELYDFIRDKGGVVFANLDN-----LILKEWYNSFSVIYYGT 229

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K     ++        +  S        +    G + + N L +  +    G++   +
Sbjct: 230 TSKAFVYGRMIGFDPTLVLEWSKNSNKNKIVTHFVGGYNLENILASICVANYFGVEDYRI 289

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              +     +  R +   T      +   Y    +S+ + L N   +     +V+ G  G
Sbjct: 290 NVVIANYIPINNRSQNCKTKKNNLIVDA-YNANPDSMRVALDNFYKLRISPKMVILGEMG 348

Query: 393 DRDQGKRPIMGKIALDL----ADIAIVTDDN 419
           +     +    K+   L     D   +   N
Sbjct: 349 ELGSYSKEEHQKVLNSLWGSKVDKVFLIGRN 379


>gi|86608391|ref|YP_477153.1| cyanophycin synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556933|gb|ABD01890.1| cyanophycin synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 898

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 63/166 (37%), Gaps = 13/166 (7%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHT 365
           F + N L A       G+    +   L          PGR         G ++ VDYAH 
Sbjct: 689 FMIQNVLAATLAAFLHGVSIDDIRMALGTFTSSVAQTPGRLNLFDVG--GYQVLVDYAHN 746

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSED 424
               E I   +      R I V G  GDR       +G +A  + D AIV  DD+ R  +
Sbjct: 747 PAGYEAIQSTLERWDCQRKIGVIGGPGDRRNSDLRELGVLAARMFDRAIVKEDDDRRGRE 806

Query: 425 PEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P ++ A I  G           E  +   AI TA+E     D++V+
Sbjct: 807 PGEVAALIRQGWEQEKAGDRLQEILDEATAIETALEKAEPGDLVVI 852


>gi|254303960|ref|ZP_04971318.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324152|gb|EDK89402.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 608

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 136/391 (34%), Gaps = 43/391 (10%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
            L+D       E +N L +F    ++ +I  V  DSR +  G +F AI     +G+ ++ 
Sbjct: 172 NLKDFSEILKREKLNDL-LFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVK 226

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
             + +G   ++  +         T   +  IL V NT   +   A++   K    ++ +T
Sbjct: 227 DVLDKGVSLVIADN---------TDVKDERILKVSNTIATMQDLATKYRKKLDIQVIGIT 277

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++    V  +      +    G  +            T               + 
Sbjct: 278 GSNGKTTTKDIVYSLLSAKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EK 324

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E +  + 
Sbjct: 325 FVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRDNVFKAKTELLEFVNKEN 384

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +       D      +           +   +      K    I + ++  IS       
Sbjct: 385 TFVC---GDDEYLAKLDVNRIGFNDNNNHKIESYEFSDKGSKFILDGKEYKIS------- 434

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G+  + N  +A  L   +G+    +   L+++ +   RF+ +        I   
Sbjct: 435 ----LLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISNMRFQEIKIG-EDIYINDA 489

Query: 362 YAHTSNSLEMILKNIRTITSGRI-IVVFGCG 391
           Y  +  S++  +  +  I + +  I + G  
Sbjct: 490 YNASPTSMKAAIDTLNEIYNDKYKIAILGDM 520


>gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
 gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
          Length = 453

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 154/446 (34%), Gaps = 38/446 (8%)

Query: 25  WRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSA 84
             + ++   + DSR I++G +FVA+ G++ DGH ++  A           +  +      
Sbjct: 19  GPDTEVIGAALDSRRIRSGELFVALTGSRADGHDYLSAART---------AGAAAALLER 69

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLS 143
            +    P  +V + R  L+     +        + AVTG++GK++V   +  I  R G +
Sbjct: 70  AVPEPLPQWIVADGRGTLAALGCWVREHCAATQIVAVTGSNGKTTVKEMLAAILARHGAT 129

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G          +N L  P  +                + + AS+ G  +     ++
Sbjct: 130 LATSGN--------YNNELGVPLTL-----CRLQRRHRYAVLELGASAPGQIRRLTQWVR 176

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN G  H+D   +      A+ +        +    +   D     + +R    
Sbjct: 177 PSVGVITNAGPAHLDGFGSVAGV--ARGKGELFETLPDDGIAVINVDDAFANLWQRL--- 231

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R       G     +         Q+ +  +G+      PL G     NAL +A   +
Sbjct: 232 -ARPRRCITFGLDRRAEVRATTAADGQLELRWDGRVLPVRLPLLGRHNQLNALASAATAL 290

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+ +  A +   LE +  VPGR  +         +   Y     SL   ++ +   +  R
Sbjct: 291 ALELPGAAIRAGLEAMRPVPGRLCWREGIGGARILDDTYNANPASLAAAIRVLAENSQRR 350

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            +V+       +   R  + + A  LA    V     R     ++ A    G     E  
Sbjct: 351 WLVLGDMAELGETAGR--LHRRAGQLARAGGV----ERLFVIGELAAASAAGFGLGAECF 404

Query: 444 NRIEAIRTAIE-MLNKQDVLVVAGKG 468
           +  EA+  A+   L     +++  KG
Sbjct: 405 DDREALVKALSGGLGPDIAVLI--KG 428


>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
 gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
          Length = 834

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 129/364 (35%), Gaps = 27/364 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +      I+ + +DSR +      +F A+   + DG  +IP   A+G 
Sbjct: 5   IESITESMGARRVGSVPATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYARGV 64

Query: 69  EAIVVS----SAYSLQDFSATIRSNTPI---LVVDNTRKFLSLFASRLYGKHPENILAVT 121
              VVS              T    +P+   L+V N  K L   A +  GK    ++ +T
Sbjct: 65  RNFVVSEESYRDIESGKLKPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQIPVIGIT 124

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+ V  ++ Q+                 S  + ++++  P  ++     S L+   
Sbjct: 125 GSNGKTIVKEWLHQLISPERAIV--------RSPRSYNSQIGVPLSVWQMNEQSELAIFE 176

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+      
Sbjct: 177 A-----GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLVLFK----NC 227

Query: 242 SPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              I   DD +    V K   +A     S     + +++ KV        ++      D 
Sbjct: 228 DVVIYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLYISKVEKKEECTVISYRYLDMDN 287

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P   +  + N+L     C+ + + +  + E + KL  V  R E     +    I  
Sbjct: 288 TFTLPFIDDASIENSLNCLAACLYLMLPAEKITERMAKLEPVAMRLEVKEGKNGCLLIND 347

Query: 361 DYAH 364
            Y  
Sbjct: 348 SYNS 351


>gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 466

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 123/375 (32%), Gaps = 27/375 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
             +   +FV ++GN+ DGH FI  AI++GA   +V   + +   +  +   +  + V NT
Sbjct: 39  EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPI-YKNLNLEEKSKAIPVKNT 96

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              L   AS    +    ++AVTG+SGK++    +    +    S+  +          +
Sbjct: 97  LTALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVT--------EK 148

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +       P  L K                  +H  +  RL  I     +          
Sbjct: 149 NYNNEIGLPFTLFKISDQTRVVVCELGM----NHKGEISRLSQIAKPDYAIITTIGTAHI 204

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                Q           E L K           YSK +  +    G +++       F  
Sbjct: 205 EFLESQKNIAKAKGEIVEGLKKGGKLFYPNTGEYSKILKNKTRKHGNKLVLTKSDKIFSI 264

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L+K  +          +E K+    + LPGE  + N  VA     AIG     + E +  
Sbjct: 265 LQKKSSG-------FLLEYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHS 317

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCG---GDR 394
                 R +    N +   I   Y     S+   L+    +  G+    V G     G+ 
Sbjct: 318 FKSSNKRLDLQ--NGKYSVINDTYNANYESMISSLEVADQLADGKEFYAVLGDMKELGEY 375

Query: 395 DQGKRPIMGKIALDL 409
            +     +GK   + 
Sbjct: 376 SKEFHKKLGKKCSEF 390


>gi|111115130|ref|YP_709748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|216263734|ref|ZP_03435728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
 gi|110890404|gb|ABH01572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|215979778|gb|EEC20600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
          Length = 463

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 145/425 (34%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        E+ ++  S DSR I      G ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----EKVVSFYSLDSREINDNNINGSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +  + S  +  +             L+  N  K L   AS L  +   
Sbjct: 59  FSFVKYLIDLGVKCFICSRDHESECIEYLNDNEGLVFLLTSNVIKLLQTLASFLIKRTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEILYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGISYVGEMDLLSQILK--------PEIVIITNISYAHMQAFRGLQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + +++K       K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDYENLNIKSFSFSEGKFSYDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLIETTFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNI--RTITSGRIIVV--FGCGGDRD-QGKRPIMGKIALDLA 410
             +   Y     S   +   I    I + + IV+  F   G+   +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLNIQNKKFIVLGSFKELGEFAYKTHKDLIQEAVSMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
 gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
          Length = 833

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 130/362 (35%), Gaps = 23/362 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ-AG-WIFVAIVGNKEDGHLFIPQAIAQG 67
              E+   +    +   +  IN + +DSR +      +F A+V ++ DG  +I    ++G
Sbjct: 4   TIEEITRIIKAKRIGDNQTIINWLLTDSRSLSFPDETLFFALVTSRGDGSKYIADLYSRG 63

Query: 68  AE-AIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
               ++ +         Q    +  ++   L V+N  K L   A+    +    ++ +TG
Sbjct: 64  VRNFVITNYENQILAKFQSRGISPYADANFLEVENPLKALQKLAAYHRSQFDCPVVGITG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK+ V  ++ QI   S             S  + ++++  P  +          +   
Sbjct: 124 SNGKTVVKEWLHQILASSKKIV--------RSPRSYNSQIGVPLSL-WQMHSDADVAIIE 174

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             +S       L+      I+   G  TNLG  H +   + Q     K++LF+     + 
Sbjct: 175 AGISQPDEMGALE----SMIRPTIGVLTNLGGAHQENFFSMQEKCMEKLKLFK---HCDV 227

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 +D  S  + K    +     S     + + +  +    N+  ++    G D  +
Sbjct: 228 VIYEADNDLISNCMSKSMLTSREIAWSRYDMERPLFISGIQKDENETTISFRYLGLDNYY 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P   E  + N++    +C+ + I +  +   + +L  +  R E     +    I   Y
Sbjct: 288 KIPFIDEASIENSIQCLAICLYLMIPADQIRAGMAQLEPIAMRLEVKEGKNNCLIINDSY 347

Query: 363 AH 364
             
Sbjct: 348 NS 349


>gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 466

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 124/375 (33%), Gaps = 27/375 (7%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
             +   +FV ++GN+ DGH FI  AI++GA   +V   + +   +  +   +  + V NT
Sbjct: 39  EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPI-YKNLNLEEKSKAIPVKNT 96

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              L   AS    +    ++AVTG+SGK++    +    +    S+  +          +
Sbjct: 97  LTALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVT--------EK 148

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +       P  L K                  +H  +  RL  I     +          
Sbjct: 149 NYNNEIGLPFTLFKISDQTRVVVCELGM----NHKGEISRLSQIAKPDYAIITTIGTAHI 204

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                Q           E L K           YSK +  +    G +++    +  F  
Sbjct: 205 EFLESQKNIAKAKGEIVEGLKKGGKLFYPNTGEYSKILKNKTRKHGNKLVLTKSEKIFSI 264

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L+K  +          +E K+    + LPGE  + N  VA     AIG     + E +  
Sbjct: 265 LQKKSSG-------FLLEYKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHS 317

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCG---GDR 394
                 R +    N +   I   Y     S+   L+    +  G+    V G     G+ 
Sbjct: 318 FKSSNKRLDLQ--NGKYSVINDTYNANYESMISSLEVADQLADGKEFYAVLGDMKELGEY 375

Query: 395 DQGKRPIMGKIALDL 409
            +     +GK   + 
Sbjct: 376 SKEFHKKLGKKCSEF 390


>gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
 gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
          Length = 822

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 132/380 (34%), Gaps = 26/380 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +        +  +N + +DSR I      +F A+ G + DGH FI      G 
Sbjct: 8   ITQIQQIIGASATITHDSMVNNLLTDSRKINNPFTSLFFALSG-RRDGHEFIGDVYQAGV 66

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV            +  +   LVVD+  K L   A     K   +++ +TG++GK+ 
Sbjct: 67  RNFVV----FKLPVKVDLLRDANFLVVDDVLKALQKLAIHHREKFDIDVIGITGSNGKTI 122

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+                 +  + ++++  P  +             +      
Sbjct: 123 VKEWLYQLLCADKKI--------IRNPKSYNSQIGVPLSV-----WQMDDQHNLGIFEAG 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S+ G  +     IK   G  T++G  H +     +     K++LF              
Sbjct: 170 ISTTGEMERLERMIKPTIGILTHMGSAHDEGFSGPEKKLEEKLKLFTHCSMVIY------ 223

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                 +   R         S  ++   +++     I NK  +    +GK+ + L P   
Sbjct: 224 QYDALLKYKARVPGKTKFTWSRKFREVDLYVFNETIISNKYYLRGVFKGKEIECLVPFID 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  + NA+V     +A+G DS +  + LE+L  V  R E     +    I   Y     S
Sbjct: 284 EASIENAIVCWATMLALGYDSQVADDRLERLVPVSMRMELKQGINNCSIIDDSYNSDFQS 343

Query: 369 LEMILKNIRTITSGRIIVVF 388
           LE+ L  +      +   + 
Sbjct: 344 LEIALNFLNQQNQHQTRTLI 363


>gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium variabile DSM 44702]
          Length = 505

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 78/495 (15%), Positives = 154/495 (31%), Gaps = 53/495 (10%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +L   +  ++    ++      +  +   V  DSR + AG +++A+ G + DGH F+  A
Sbjct: 3   ELTAGEIADITGG-TLVDGADPDTVVTGPVEFDSRRVTAGSVYMALPGARVDGHDFVGPA 61

Query: 64  IAQGAEAIVVSSAYSLQDF-------------SATIRSNTPILVVDNTRKFLSLFASR-- 108
           +  GA  ++     +L +              +A+   N P  + +     +S  A    
Sbjct: 62  LEAGAALVMAGRPTALPELLCPAVEEEQGTQRNASYLDNDPDGLGERVITAVSRLARHST 121

Query: 109 --LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
             L  ++   ++ VTG++GK+S    +  +  R G +    G  +               
Sbjct: 122 EVLVAENRLTVIGVTGSAGKTSTKDLLGAVFSRDGETIAPPGSLNNEIGHPY-------- 173

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                  L    +       + A   G   H         G   N+G  H+    +++  
Sbjct: 174 -----TVLKAGRTTKYLVAEMSARGQGHIAHLARIAPPRIGVVLNVGTAHLGEFGSREGI 228

Query: 227 FNA--KMRLFEELLPKESPAIIYADDAYSKEV----MKRAHNAGCRVLSVGYQGKFIHLK 280
             A  ++        +   A++ ADD     +      R         + G         
Sbjct: 229 AQAKGELVEALPPAAEGGVAVLNADDDLVSGMAPRTAARVVYYSADQGADGTADYRASDI 288

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEKL 339
            +  +     +    EG+       + G   V NAL AA   I  G+    +        
Sbjct: 289 TLDEVARASFLLHHPEGEPVKVSLGVFGAHNVANALAAAAAAIECGLAPSEVASALTGYT 348

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI----IVVFGCG---G 392
                R +          I   Y    +S+   +  +    S R       V G     G
Sbjct: 349 AASANRMDVRTRPDGLTVINDSYNANPDSMRAGIDALAHAASTRTGTESWAVLGQMAELG 408

Query: 393 DRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           +   G+   +G  +A    D  IV        + + + A          +  +   A+  
Sbjct: 409 EDAVGEHTGIGAYLAERGIDRLIVVG---HGVNQDALAAAGEDNGIRTRQVDDVDGAVNL 465

Query: 452 AIEML--NKQDVLVV 464
            +     +  DV++V
Sbjct: 466 -LTGAPTHPGDVVLV 479


>gi|38234177|ref|NP_939944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200439|emb|CAE50127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium diphtheriae]
          Length = 496

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 91/494 (18%), Positives = 154/494 (31%), Gaps = 52/494 (10%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           DL  +    ++   ++      E  +   V  DSR +  G +FVA+ G + DGH F+P A
Sbjct: 3   DLTVEQIARIVGG-TLTQGTDPETVVTGPVEFDSRKVSEGSLFVALAGARVDGHDFVPAA 61

Query: 64  ---------------IAQG-AEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLS 103
                          I  G A AIVV  A     S   ++     +  +  V    + + 
Sbjct: 62  LESGAAAALVAHPVKIDSGLAPAIVVPPATGQQQSANSYATEHDEDGSVAAV---LQGMG 118

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           L A R+        L V G +G +   S    +       +  + P  + ++        
Sbjct: 119 LIARRVIDTLTAQGLTVMGVTGSAGKTSTKDMLASILSNQAPTVAPPGSFNNEIGHP--- 175

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                    AL            + A   G   H         G   N+G  H+    ++
Sbjct: 176 -------YTALRCTEQTRYLVAEMSARGIGHIAHLAQIAPPKIGVVLNVGTAHLGEFGSR 228

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +    AK  L E  LP +  A++ ADD     +  R         +              
Sbjct: 229 EVIAQAKGELVEA-LPHDGVAVLNADDDLVAGMRTRTDAKVITFSANSQDADVYATDIEL 287

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKLHVV 342
             + + + T+ +   +      + G+ QV NAL A     A GI    + E     L   
Sbjct: 288 DDYARARFTLHIGEAENVVTLRVAGQHQVSNALAATAAAYAAGIAIDDIAEALSNHLGAS 347

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--------IVVFGCG--- 391
             R   +  +     I   Y   + S+   L  + T    +           V G     
Sbjct: 348 AHRMALMHRSDGATIIDDAYNANTESMRAGLTALSTTAHNKSHKGEASHAWAVLGPMSEL 407

Query: 392 GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G+        +G++  +L     IV  D   S D   +           +   +  EA  
Sbjct: 408 GEESVAAHEEIGRLLGELNVHGLIVVGD---SADSLALADGARRSNVTTLMARDTAEAAD 464

Query: 451 TAIEMLNKQDVLVV 464
              + +   DV +V
Sbjct: 465 LLDQNMGSADVALV 478


>gi|332976264|gb|EGK13126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Desmospora sp. 8437]
          Length = 70

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 1  MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
          M L  LI       I           + +I  +  DSR ++ G +F+A+ G   DGH FI
Sbjct: 1  MNLNTLIDSLAVAQITG-------NTDLEITGMEVDSRRVRPGDLFIALKGFTVDGHRFI 53

Query: 61 PQAIAQGAEAIVVSSA 76
           QA+ +GA A+V+   
Sbjct: 54 RQAVEKGARAVVLEEE 69


>gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289]
 gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289]
          Length = 826

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 143/398 (35%), Gaps = 30/398 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +       ++  I+ V +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 4   TIEKVTTLIGARRYGDKDADISFVLTDSRSLCFPEETLFFALKSERNDGHNYIPELYGRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV +     +       ++  L V  + + L   A R   ++   ++ +TG++GK+
Sbjct: 64  VRNFVVETVPEDWN---KRYPDSNFLKVVGSLEALQRLAERHRDEYLIPVVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+     + +         S  + ++++  P  + L        +  V     
Sbjct: 121 MVKEWLYQLLSPQMVVT--------RSPRSYNSQIGVPLSVLL-----LNENTQVGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+   G FT LG  H +   + +A    K+ LF          +  
Sbjct: 168 GISQPGEMSALRDIIQPTIGVFTCLGSAHQENFPSLEAKCKEKLHLF----HDTQAIVYS 223

Query: 248 ADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFP 305
            DD      +      G +   S   +    ++K +     +  VT + +  K+  +  P
Sbjct: 224 LDDEVLNRCLDEYDYKGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH- 364
              +  V N++  A   + +G+  A + E + +L  V  R E          I   Y   
Sbjct: 284 FIDDASVENSITCAVTALQLGVTPAALGERMAQLEPVAMRLEVKEGQHGCTLINDSYNSD 343

Query: 365 -TSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQG 397
             S  + +   N R    GR   +        GD D+ 
Sbjct: 344 FNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDKD 381


>gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
          Length = 828

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 128/359 (35%), Gaps = 21/359 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               +   +    +      I+ + +DSR +      +F A+   + DG  +I    A+G
Sbjct: 4   TIENIAQIIGARRIGELSATIDWLLTDSRSLSFPEETLFFALATKRNDGARYIRDLYARG 63

Query: 68  AE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
               +V        +   +   +  +LVV +  K L   A +   +    ++ +TG++GK
Sbjct: 64  VRNFVVSEEGLKEAEALGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGITGSNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  ++ Q+     + +         S  + ++++  P  +             +  + 
Sbjct: 124 TVVKEWLHQLLSPERVIT--------RSPRSYNSQIGVPLSV-----WQMNEQTELAILE 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+         I 
Sbjct: 171 AGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFK----DCDVVIY 226

Query: 247 YADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD +    + ++  +   +  S     + +++ KV    N   ++      D  F  P
Sbjct: 227 NGDDEFISNCVSKSIFSAREIAWSRRDMERPLYINKVEKQENSTVISYRYLDMDNTFTLP 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L     C+ + + +  + E + KL  V  R E     +    I   Y  
Sbjct: 287 FIDDASIENSLNCLAACLYLMLPAGQITERMAKLEPVAMRLEVKEGKNGCLLINDSYNS 345


>gi|332528822|ref|ZP_08404796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
 gi|332041681|gb|EGI78033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
          Length = 496

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 84/422 (19%), Positives = 152/422 (36%), Gaps = 36/422 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+D++       +           E ++  V +DSR ++ G +FVA+ G++ DG+ F+ Q
Sbjct: 11  LRDILPWLGNAQLLADEAGGPAVDEVRVRRVHTDSRTLREGDLFVALRGDRFDGNAFLAQ 70

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK----HPENIL 118
           A A GA A + S A +L+      ++  P +VV +TR+ L   A          H   ++
Sbjct: 71  ARAAGAVAALCSDAAALR------QAQLPGIVVSDTRRALGQLAQGWRQHIARGHRLPLI 124

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++V      I +     +      +  +       L     + L        
Sbjct: 125 AVTGSNGKTTVTQMTAAILRAHKPQTMLATEGNFNNDIGVPLTL-----LRLRPRHELAV 179

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +   +   E +           +        N  R+H ++  + +A       +    L
Sbjct: 180 VELGMNHPGEIAELAAITRPTVAL------VNNAQREHQEFMHSIEAVARENGAVISA-L 232

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---------KKVCAIHNKQ 289
             +  A+  +DDAY+    + A        SV      +H           +V     + 
Sbjct: 233 GADGVAVFPSDDAYTGIWHELAGARSRLTFSVNDAAADLHCADPALAAPQWQVDDKGGRW 292

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +V          F   + G   V NAL AA   +A G+    +   LE    V GR   +
Sbjct: 293 EVQARTPAGALRFTLRVAGLHNVKNALAAAACALAAGVPLNAIARGLESFEPVSGRSRAL 352

Query: 350 GTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGK 404
                G     I   Y    +S+   +  + ++   R++V+   G  G         +G 
Sbjct: 353 RLPVAGRELTLIDDTYNANPDSVRAAIDVLASLPGPRLLVLGDMGEVGQEGPRFHAEVGT 412

Query: 405 IA 406
            A
Sbjct: 413 YA 414


>gi|320531618|ref|ZP_08032560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136147|gb|EFW28153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 483

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 80/489 (16%), Positives = 143/489 (29%), Gaps = 50/489 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L         ++   +    +   +  +   V +DSR    G +FVA+ G + DGH  
Sbjct: 5   MRLS------LSQIAAAVGGRLIG-PDVSVTGPVVTDSRQATEGSLFVAVHGERTDGHAH 57

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPE- 115
           +  A A GA   +VS   + +   +  R+  P   +++V++T   L   A     +    
Sbjct: 58  LGSAGALGAVGAIVSDLEAARSGLSQGRTEEPSMGLVLVEDTVTALGALARTHLEELRRA 117

Query: 116 --------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                    ++A+TG+ GK++     +Q+   SG +       +          LT    
Sbjct: 118 AADRGERLTVVAMTGSVGKTTTKDLTRQLLAPSGPTVAPRASFN----NEIGLPLTVLEA 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      S     + + AS  G   +      L A     +G  H+    + +   
Sbjct: 174 DE---------STRYLVLEMGASGPGHIAYLTGIAPLDAAGVLMVGHAHMGGFGSIEGVA 224

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFIHLKKVCAI 285
            AK  +   L P  +  +   D   +                           +  V A 
Sbjct: 225 AAKAEIIAGLRPDGTTILNADDARAAAMAELAPARVLTFSSQGRAADLRTENVVLDVAAR 284

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                    ++      L              A     A      +           P R
Sbjct: 285 AAFDLHLPGLDEPRRVQLSVAGAHNVANALAAAGLALAAGLAPELIAERLGSVSIESPHR 344

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPI 401
            +          I   Y    +S+   L  +  +   R  VV        G+        
Sbjct: 345 MDVSELGGDLLLIDDSYNANIDSMTAALAVLPALAGDRRRVVVVSEMLELGESSAADHAR 404

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459
            G++A   A  A++       E  E        G  G    G  +   AI     +L+  
Sbjct: 405 TGELAAQ-AGAAMLIGIGSTQEALEA------AGARGVEVVGFDDAATAISQIDALLSDG 457

Query: 460 DVLVVAGKG 468
           D ++V  KG
Sbjct: 458 DAVLV--KG 464


>gi|302383887|ref|YP_003819710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194515|gb|ADL02087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 474

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 122/351 (34%), Gaps = 29/351 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           N ++ +SR I+ G +F+A+ G + DGH            A    +A +            
Sbjct: 30  NGLTYNSREIEPGDLFLALKGAR-DGHD----------FAASAFAAGAAGALVERPVDGG 78

Query: 91  PILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P +VV +T   L    A+           AVTG+ GK+SV   ++     +G +   I  
Sbjct: 79  PCIVVPDTLHALEALGAAARDRAPHIRRGAVTGSVGKTSVTQAIKAGLDLAGPAHASIKS 138

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                            P+ LA       S       +  ++ G        ++  A   
Sbjct: 139 ----------YNNHIGVPLTLA---RMHPSVERAVFEIGMNAPGEIGPLARMVQPHAACV 185

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +G  HI+     +A   A+     + L     A+I  D+ + + + + A  AG RV +
Sbjct: 186 TTVGPVHIEAFADGEAGVAAEKAAIFQGLGPGGLAVINGDNPWVELLHQAALRAGARVAT 245

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G        L          +VT  V G+   F     G     N+L    +  A+ + 
Sbjct: 246 FGSEPAHDARLIDFTPNPEGARVTAEVYGRTHVFPLRQSGFHWGLNSLAVILMLDALDVP 305

Query: 329 SALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVD--YAHTSNSLEMILKNI 376
               LE L     + GR E  +    +G    +D  Y     S++    ++
Sbjct: 306 VETALEALAHFEPLKGRGETRLVHLPKGAFTLIDESYNANPLSMKAGFLSL 356


>gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
 gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
          Length = 825

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 136/385 (35%), Gaps = 26/385 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +        +  I  + +DSR +      +F A+   + DGH +I     +G
Sbjct: 4   TIEKVATLIGARRYGKHKADIGFLLTDSRSLCFPEETLFFALKTKRNDGHNYIADLYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV     + +   +  S    L V +T + L   A R        I+ +TG++GK+
Sbjct: 64  VRNFVV---TDVPNNYDSAYSGANFLKVIDTLEALQRLAERHRDAFDIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  ++L           +     
Sbjct: 121 MVKEWLYQLMSPDMYVT--------RSPRSYNSQVGVPLSVWLM-----DKQTRLGIFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+      TNLG  H +  ++ +     K  LF          + +
Sbjct: 168 GISEKGEMSALRDIIQPTIAVLTNLGSAHQENFESAEEKCREKAILF----HDAKTIVYH 223

Query: 248 ADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFP 305
           ADD     V+      G R   S   +   +++K V        +T   +G  +  +  P
Sbjct: 224 ADDKIVAGVVASLDYRGERLYWSTSDRQAPMYIKAVEKKETAATITYIYKGGIENWYSIP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH- 364
              +  V N++V A + + +G+D+  + E + +L  V  R E          I   Y   
Sbjct: 284 FIDDASVTNSIVCATIALHLGLDADKLDERMLQLEPVAMRLEVKEGRHGCTLINDSYNSD 343

Query: 365 -TSNSLEMILKNIRTITSGRIIVVF 388
             S  + +   N R    GR   + 
Sbjct: 344 FNSLDIALDFMNRRPDHQGRRRTLI 368


>gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95]
          Length = 430

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 123/384 (32%), Gaps = 34/384 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +    DSR +  G +F+ + G K DGHLFI  A+  GA  ++V                 
Sbjct: 10  HNFQIDSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIVEKDVVDFPKEK------ 63

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I+ V++  + + + AS L  ++ +  + +TG++GK++    +  +      +       
Sbjct: 64  -IIKVNSVLEEMLISASTLINENAKLKIGITGSTGKTTTKECLYYLLLAYFKTFRNEMNL 122

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +  +  P  I                             R   + +     T
Sbjct: 123 --------NTEIGIPLSILNNYNNEETVILEEGLRKKGDLEF---LSRYFNLDV--AIIT 169

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H+++  + +     KM++   +                  + + A     R+   
Sbjct: 170 NVGASHLEFLDSLETVAEEKMKITSNMDKGVLIING-----DYSLLKELAPKHLNRLTFG 224

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   LK      N      +   ++   +       +     + +GL +   ID  
Sbjct: 225 TKDENDAVLKSFEYNENHTTTFYARILQEDLMVTLNHYWSEGQILDLLSGLLLLRFIDLP 284

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           +   +L  +++   RF+ +   +    +   Y  +  S +    +I+       I++ G 
Sbjct: 285 VDPYYLFNINIPQDRFQTIKRGNL-LIVNDSYNASYESFKSAFNSIKKWNLSPKIIIMGE 343

Query: 391 GGDRDQGKRPIMGKIALDLADIAI 414
                      +GK + +     I
Sbjct: 344 I--------KELGKYSEEYHIKVI 359


>gi|149186206|ref|ZP_01864520.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
 gi|148830237|gb|EDL48674.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
          Length = 493

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 96/469 (20%), Positives = 166/469 (35%), Gaps = 60/469 (12%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            + ++  V  DSR +  G +FVA+ G   DGH F+ +           + A         
Sbjct: 42  SDFQVAGVEMDSRDVVHGDLFVALKGEAMDGHRFLDK-----------AFANGAAAAIVD 90

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
              + P ++V++T + L   A     +    I+ VTG+ GK+ V   +    +R+   + 
Sbjct: 91  RPVDYPHILVEDTTEALKALARAARNRTEAKIIGVTGSVGKTGVKEAIFASLERASRGAA 150

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                S  +            P+ LA+  +           +  ++ G  +     ++  
Sbjct: 151 HRSTRSYNNHVGV--------PLSLARMPARNR---FGIFEMGMNNAGEIEGLTTQVRPH 199

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   HI+   + +A  +AK  +F   L     A+I AD  + + +   A     
Sbjct: 200 VAVITTIAPAHIENLGSMEAIADAKAEIFAG-LEPGGVAVIPADSEHFERLRLAALRMSA 258

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------FDFLFPLPGEFQVYNALVA 318
            V+S G                     ++ E  +         +    PG+  V N+L  
Sbjct: 259 SVVSFGRAANADVRLLDAIPSANGGSLVTCEFGNPAKGGGRLCYTVAEPGDHWVINSLAV 318

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKN 375
                A G D A     L ++  + GR    G ++ GG+  +    Y     S+   L  
Sbjct: 319 MATVRAAGGDMAAAGLALAEMGGLKGRGARHGIDAPGGKALLIDESYNANPASMRATLAQ 378

Query: 376 IRTITSGRIIVVFGCG---GDRDQGKRPIMGK--IALDLADIAIVTDDNPRSEDPEKIRA 430
           +    S R I V G     GD        + +  IA D  D A++  D  R      +  
Sbjct: 379 LGQTPSSRRIAVLGSMKELGDFAAKFHAGLSEPLIAAD-VDYALLVGDEMR-----ALAR 432

Query: 431 EIIHGIPGFIEKGNRIE------AIRTAIEMLNK-----QDVLVVAGKG 468
           E+  G P F   GN +E      A   AI +L +      D ++V  KG
Sbjct: 433 EL--GKPAFNSLGNPLEWEHCNSA-EEAIGLLQEFGIVAGDAVLV--KG 476


>gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 472

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 124/390 (31%), Gaps = 36/390 (9%)

Query: 7   IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
           I  +   +   L           +  V +DSR    G +FV + G++ DGH F   A+ Q
Sbjct: 3   ITINEAAVCLGLPGTLPDAENTVLTSVVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQ 62

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A++ +              N P+LVV +T K L   A     +    ++AVTGT+GK
Sbjct: 63  GAAAVLAAGPLPGI--------NVPVLVVPDTVKALGQLAGLWRDRTKARVVAVTGTAGK 114

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +++   + Q+    G ++      +      +    T                       
Sbjct: 115 TTLKEVLAQVLSLGGKTARNAMNHNNQIGMPRAVLGTDGD---------------EKFWI 159

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +EA           G  L       L           +           + L K    ++
Sbjct: 160 MEAGISQQGDMDDLGSVLRPDIAVVLNAGTGHTEGLGEKGVAWHKARLLKYLAKGGKGLV 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--------KVCAIHNKQQVTISVEGK 298
            AD        +      C     G   +F  +          V          + + G+
Sbjct: 220 CADYPDLVREARATETDICFFSGSGRDAEFRAVYAGAAPQGAAVTPSDAYGLYRLWLGGR 279

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +FD   P  G +   N    A +   +G+D   + + L +  +   RF  V     G  +
Sbjct: 280 EFDVTAPFRGAYGAENVAAVAAVAHMLGLDLQAIRQGLAQARMPAQRFNQV---QAGSWL 336

Query: 359 YVD--YAHTSNSLEMILKNIRTITSGRIIV 386
            +D  Y     S+  +L       +GR  V
Sbjct: 337 LIDDTYNANPLSMGRMLDAAAERAAGRPFV 366


>gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
 gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
          Length = 826

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 152/397 (38%), Gaps = 28/397 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +       ++  I+ V +DSR +      +F A+   + DGH +IP+  A+G
Sbjct: 4   TIEKVTTLIGARRYGDKDANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIPELYARG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV     + +  AT   ++  L V  + + L   A R   ++   I+ +TG++GK+
Sbjct: 64  VRNFVVE---VVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+     + +         S  + ++++  P  + L        +  V     
Sbjct: 121 MVKEWLYQLLSPQMVVT--------RSPRSYNSQIGVPLSVLL-----LNENTQVGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+   G FT LG  H +   + +A  + K++LF      E+     
Sbjct: 168 GISQPGEMMALRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH---DTEAIVYSA 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306
            ++  ++ + +  +       SV       ++K +     +  V+   +G+ +  +  P 
Sbjct: 225 DNEVMAQCLSQYDYKGQKLDWSVKNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLPF 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH-- 364
             +  V N++  A + + +G+  A + E + +L  V  R E          I   Y    
Sbjct: 285 IDDASVKNSITCAVVSLHLGLTPATISERMAQLEPVAMRLEVKEGQHGCTLINDSYNSDF 344

Query: 365 TSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQG 397
            S  + +   N R    GR   +        GD D+ 
Sbjct: 345 NSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDKD 381


>gi|187918178|ref|YP_001883741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
 gi|119861026|gb|AAX16821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
          Length = 464

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 141/424 (33%), Gaps = 33/424 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ---AG-WIFVAIVGNKEDGH 57
           K++D++      L +   +  +   +R ++  S DSR I    +G  ++ A  G++ DG 
Sbjct: 5   KIKDILDS----LGDVKFVGYLSSMQRVVSFYSLDSREINDENSGASLYFAYKGDRVDGF 60

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            F+   I  G +  V S  Y            +   L+  N    L   A+    +    
Sbjct: 61  SFVEYLIDIGVKCFVCSKDYEHLCVEYLNKDESLVFLLTSNVVMCLQNLAAHFIKRTNFK 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TG++GK++    +  I      +    G  ++          T        +  + 
Sbjct: 121 RIAITGSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTEGD-----EEYAV 175

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +   S  L+              TN+   H+   +  +   + K  +  +
Sbjct: 176 FEVGISYVGEMNLLSEILE--------PEIVIVTNISYAHMQAFEDLEMIASEKSEIITK 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   I+     Y   + + A +    +    +    + +K    +++K     +  
Sbjct: 228 STQM---VILNESCPYHSRLREIAKSISPEINIFYFDFNSLQIKSFAFLNDKFSYDFT-- 282

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K FD+   LPG+  ++NA+    L + +G+    +   L       GR E +       
Sbjct: 283 YKGFDYSILLPGKHNIFNAISCINLALLLGMSENEIRNGLLNADFQKGRAELLRVKDY-L 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ----GKRPIMGKIALDLAD 411
            +   Y     S   + + I      G+  ++ G   +  +      +  M ++ L   D
Sbjct: 342 VLNDSYNGNLGSFMALKEMILDFEIKGKKFIILGSFKELGKFAYEAHKTAMREVILMNFD 401

Query: 412 IAIV 415
              +
Sbjct: 402 KVFL 405


>gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
 gi|27887168|gb|EAA24272.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
          Length = 611

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 139/388 (35%), Gaps = 46/388 (11%)

Query: 9   KDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           KDF E++ +  +  + + E     +I  V  DSR +  G +F AI     +G+ ++   +
Sbjct: 178 KDFSEILKRGKLNELIFEEFSKKVQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVL 233

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +G   ++  +         T   +  ++ V +T   +   A++   K    ++ +TG++
Sbjct: 234 DKGTSLVIADN---------TDIKDKRVIKVTDTIATMQDLATKYRNKLDIQVVGITGSN 284

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    V  +      +    G  +            T               +    
Sbjct: 285 GKTTTKDIVYSLLSVKAKTLKTEGNYNNHIGLPYTLLNVTDE-------------EKFVV 331

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + +  SS G  +   +         TN+G  HI++ +T+   F AK  L E         
Sbjct: 332 LEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRDNVFKAKTELLEF-------- 383

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                D  +  V       G   ++     +    K      + +     ++GK+++   
Sbjct: 384 ----VDKENTFVCGDDEYLGKLDVNKVGFNENNTYKIESYEFSNKGSKFILDGKEYEMSL 439

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              G+  + N  +A  L   IG+    + + L+++ +   RF+ +        I   Y  
Sbjct: 440 --LGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISNMRFQEIKIG-NDIYINDAYNA 496

Query: 365 TSNSLEMILKNIRTITSGRI-IVVFGCG 391
           +  S++  +  +  I + +  I + G  
Sbjct: 497 SPMSMKAAIDTLNEIYNDKYKIAILGDM 524


>gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
 gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
          Length = 822

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 142/403 (35%), Gaps = 27/403 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               + + +          ++  + +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 4   TLERIASLVGAHLWGDEAVEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
             + VVS          T   +   L V +  K L   A R        ++ +TG++GK+
Sbjct: 64  VRSFVVSRLPE----DMTSCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  +      +      V     
Sbjct: 120 VVKEWLYQLLSPERRVT--------RSPRSYNSQIGVPLSV-----WNLNEKSEVGLFEA 166

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +     I+   G FT LG  H +   + +     K++LF+         +  
Sbjct: 167 GISEPGEMEALQSVIQPTIGVFTCLGDAHQENFTSYEQKCMEKLKLFK----DAKVLVYD 222

Query: 248 ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DDA     + R+   G     S   +   +++  V     +  V+   +GK+     P 
Sbjct: 223 MDDACVAGCVNRSAFKGEYFAWSRQQRDVPLYIASVEKREAETVVSYIYKGKEAACSIPF 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA--H 364
             E  + N++    +C+ +G+    +   +  L  V  R E     S    I   Y   +
Sbjct: 283 IDEASLANSVSCLAVCLHLGMSPETIAARMAVLEPVAMRLEVKEGRSGCTLINDSYNSDY 342

Query: 365 TSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA 406
            S  + +   N R   +GR   +V             + G++A
Sbjct: 343 NSLDIALDFMNRRPDCAGRKRTLVLSDIEQAGGAPEDLYGRVA 385


>gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 265

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 1   MKLQ--DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M +   DL      E++N         ++  IN V+ +S+ + A  IF AI G   DGH 
Sbjct: 1   MNINSIDLQKIFNKEILN---------KKININNVTINSKEVTAKSIFFAIKGKNTDGHY 51

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F+ + I + ++ IVV       +F     +    + V +  + L  FA           +
Sbjct: 52  FVKEVIKKRSKVIVV-----KNNFKVPKNNLHKFIKVRSPIRSLENFAKYQRLTSQGKFV 106

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG+ GK+++   +    ++ G +       +           T               
Sbjct: 107 GITGSFGKTTLKYMLSFFLEQYGKTFSSPKSFNNHFGLPLSLSNT-------------PK 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           +       +  SS          ++   G  TN+G  H+   +  +A   AK  +   + 
Sbjct: 154 NSQFNIFELGMSSSREIDKLSQILRPDIGVITNIGPAHLKNFKNLKAVCLAKAEIMNHIQ 213

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
                 +   DD Y   + K A+N   ++++   
Sbjct: 214 ENGYIVL-NKDDFYFNTLFKIANNKKLKIITFSK 246


>gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
 gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
          Length = 825

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 127/383 (33%), Gaps = 22/383 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +        + KI  + +DSR +      +F A+   + DGH +I +   +G
Sbjct: 4   TIEKVTTLIGARRFGSTDAKIGFILTDSRSLCFPEETLFFALKSGRNDGHRYILELYHRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV     +    A+       L V ++ + L   A R   +    I+ +TG++GK+
Sbjct: 64  VRNFVV---TEVPANYASDYPQANFLKVVDSLESLQRLAERHRDEFNIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  ++L    S      V     
Sbjct: 121 MVKEWLNQLLSDDLFVT--------RSPRSYNSQVGVPLSVWLLNEHSQ-----VGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+      TNLG  H +   +++A    K+ LF +           
Sbjct: 168 GISQPGEMLVLRDIIQPTIAVLTNLGDAHQENFVSREAKCKEKLVLFHDAKIVVYNGDDS 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                   +            S         +K +        +T   +G +  +  P  
Sbjct: 228 LISDCVNAL--EDFRGERLYWSCSDHNAPFFVKSIEKKATATTITYIYKGIESWYSLPFI 285

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH--T 365
            +  + N+   A + + +G+    + E + +L  +  R E          I   Y     
Sbjct: 286 DDASITNSFACAAVALTLGVSKDALDERMLQLEPIAMRLEVKQGQHGCTLINDSYNSDIN 345

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
           S  + +   N R    GR   + 
Sbjct: 346 SLDIALDFMNRRPDHQGRRHTLI 368


>gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 469

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 93/478 (19%), Positives = 170/478 (35%), Gaps = 47/478 (9%)

Query: 1   MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK   L++L       +I       +       + VS+D+R ++ G IF A+ G + D H
Sbjct: 1   MKPVTLKELERIACGRIIQGDPGTVL-------SSVSTDTRRLKKGEIFFALSGERHDAH 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F+ QA   GA  +VVS        +A + +  P+L V+NT   L   A+         +
Sbjct: 54  NFLAQAAGAGAGCLVVSR-------TADLPAGVPVLAVENTLAALQALAAFNRKSCGARV 106

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++       I      +    G  +               P+ L       
Sbjct: 107 VAVTGSTGKTTTKDMTASILSTRLRTLKSEGNFN----------NEIGLPLTLL---RLD 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  +  V +     G +   L  I     +      +         +   A      E 
Sbjct: 154 ETCEIAVVEMAMRGAG-EIDALCRIAKPDCAVITNIGEAHLELLGTVSNIAAAKGEVLEH 212

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P    A++ A+  + +   +     G  +         I    +       +  + ++G
Sbjct: 213 IPAGGFALLNAEAPFIR--REAGRCRGKVIYYGIDCPADIRAANIRPEGRGSRFEVILDG 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  +F  P+PG   V NAL A G+   +G+    V   L  + +   R E +   +    
Sbjct: 271 ERREFFLPVPGRHNVMNALAAIGVARELGLTWEEVARGLAAVTLTGMRLEIIEAKNL-RI 329

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRI-IVVFG---CGGDRDQGKRPIMGKIALDLADIA 413
           I   Y     S +  L+ ++ +  GR  + V G     G R       +G+ A       
Sbjct: 330 INDAYNANPASAKAALQVLKEMAGGRRAVAVLGNMLELGPRAAEGHREVGEAAAGARVSC 389

Query: 414 IVTDDNPRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +VT  +        I    +  G+P        + ++A     E++   DV++V  KG
Sbjct: 390 LVTVGDL----AAGIAEGALDAGLPAERIFRCADNMQAAGILEELIRDGDVVLV--KG 441


>gi|163784268|ref|ZP_02179185.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880457|gb|EDP74044.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 237

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 69/223 (30%), Gaps = 24/223 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
           +  ++ N           +K+N    DSR  + G  FV + GN  DGH FI +   +GA 
Sbjct: 2   NLHQIANITGAKFKNLSNKKVNRFIIDSRQAKKGDFFVPLKGNNVDGHQFIDEVFKKGAF 61

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
               S      +          +LVVD+T K L+  A               G +G +  
Sbjct: 62  GSFSSKNIEKSN----------VLVVDDTLKALTDIAKYKKDFIDIK----IGITGTAGK 107

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +  + +                 ++           PI LA       +       + A
Sbjct: 108 TTTKEILSYLLSYFYPVYYTKGNYNNQI-------GLPITLANI---DKNYRYGVFELGA 157

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           S  G   +  D +       TN+G  H +     +     K  
Sbjct: 158 SKKGDISYLTDILNQNIAVITNVGYGHTEGLGGFEGVLQEKKN 200


>gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
 gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
          Length = 452

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 146/401 (36%), Gaps = 38/401 (9%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L D+  +   +L          + E   + V +D+R +  G +FVA+ G+  DG+ F+  
Sbjct: 7   LSDIARETGGQL----------FGEASFSNVCTDTRSVSPGDLFVALAGDHYDGNQFVSD 56

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                     V +       S  + +  P + VD+TR  L   A     +    ++A+TG
Sbjct: 57  ---------AVIAGAVAAITSEAVTAAIPSVKVDDTRFALGQIARLNRRRFSGPVVALTG 107

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    V +I    G         +               P+ L    +   S   
Sbjct: 108 SAGKTTTKEMVARILCERGEVLATEANFN----------NEIGVPLTLL---AIDPSHQF 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V + AS  G   +     +      TN    HI+   + +A    K  +FE  LP+  
Sbjct: 155 AVVEMGASHIGDIAYLTQFAEPTIAVLTNAMAVHIEGFGSIEAVAKTKGEIFEN-LPEGG 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFD 301
            AII  D+ + ++ +++A  A     S        +   +    N      + +  +   
Sbjct: 214 VAIINQDEPFFQQWLQQAGKASVVTFSKYDTSANYYASNIHIQTNASTVFELHLAQQTIT 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L GE  V NA+ AA   +  G     V + LE +  V GR +    ++R   I   
Sbjct: 274 IKLALLGEHNVLNAVAAAAAAMTAGATVDDVKKGLESVRPVDGRLKASADSNR-TVIDDT 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKR 399
           Y  +  S+   +  +   +  R +++       G  ++  R
Sbjct: 333 YNASPGSVMAAIDVLSGFSGRRCLILGTMAELGGLAEKSHR 373


>gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 451

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 136/385 (35%), Gaps = 31/385 (8%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              E+               + EV  DSR +  G +FVA+ G + DGH FI  A  +GA 
Sbjct: 5   TLQEVAEWTGGTRHGDA-VTVGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRGAA 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +V                 P++ V +TR  L    +    +    ++ VTG++GK++V
Sbjct: 64  AALVERDGDWP---------LPVVRVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTV 114

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I  R G +    G  +               P+ L +            + + A
Sbjct: 115 KEMIAAILARRGATLATRGNLN----------NELGVPLTLLRLDREHR---YAVIEMGA 161

Query: 190 SSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           ++ G +  RL  I        TN G  H++          AK  LF   LP    A++ A
Sbjct: 162 NAPG-EIARLTAIAAPEVAVITNAGPAHLEGFGDLAGVARAKGELFLG-LPDAGVAVVNA 219

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD  +        +  C     G         +    H      + + G       PLPG
Sbjct: 220 DDPQAPTWYALVGDRRCLRFGRGADADVRATAETAGGH----FELQIPGGRHPVRLPLPG 275

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL AA + +A+ +    ++  LE    V GR ++         +   Y     S
Sbjct: 276 RHNVMNALAAAAVAVALEVPLGDIVAGLEACSGVAGRLQWRTGREDCRILDDTYNANPAS 335

Query: 369 LEMILKNIRTITSGRIIVVFGCGGD 393
           L+  L  +     G   +V G  G+
Sbjct: 336 LQAALDVLAA-EHGERWLVLGDMGE 359


>gi|292558099|gb|ADE31100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus suis GZ1]
          Length = 83

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEM-LNKQDVLVVAGKGHET 471
           I+T D+P  EDP  I  +I   +        +R EAIRTA+    + +D +++AGKG + 
Sbjct: 2   ILTVDDPNREDPAAIAEQIRAHMTRTSNFILDREEAIRTAMSQTSSPKDAVIIAGKGADA 61

Query: 472 VHIVTNGEKKMSVDCDIIREIL 493
             IV   +     D ++ ++ L
Sbjct: 62  YQIVNGEKAAYDGDLEVAKQYL 83


>gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
 gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
          Length = 792

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 127/357 (35%), Gaps = 27/357 (7%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +DSR +      +F A+   + DGH +I     +G    VV     + +   T+      
Sbjct: 3   TDSRSLCFPEETLFFALKTQRNDGHRYIQDLYNRGVRQFVVEQ---VPEAYETLYPQANF 59

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L V +T   L   A R   +    I+ +TG++GK+ V  ++ Q+   S            
Sbjct: 60  LRVPHTLAALQRLAERHRDEFSLPIVGITGSNGKTMVKEWLYQLLLPSQRIV-------- 111

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            S  + ++++  P  ++L           V       S  G      D I+   G  T+L
Sbjct: 112 RSPRSYNSQIGVPLSVWL-----LNEQTEVGIFEAGISQPGEMMALRDIIQPTIGVLTSL 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H +  ++ +     K+ L  +            +D  S+ + +  +       S   
Sbjct: 167 GAAHQENFRSMEEKCMEKLELMHDTEAM---VYCSDNDIVSRCIRRMNYKGEKISWSTCD 223

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           Q    ++K V   H    +T   + ++  F  P   E  + + +  A + + +G+    +
Sbjct: 224 QQAAFYVKSVENSH----ITYIWKEEENCFDIPFIDEASIEDCITCAAVALRLGLTPGDL 279

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH--TSNSLEMILKNIRTITSGRIIVV 387
            + + KL  V  R E          I   Y     S  + +   N R     R +++
Sbjct: 280 ADRMPKLEPVAMRLEVKEGQRGCILINDSYNSDINSLDIALDFMNRREELKKRTLIL 336


>gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM
           22836]
          Length = 823

 Score = 90.0 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 115/361 (31%), Gaps = 31/361 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +   P    E  I+ + +DSR +      +F A+     DGH +I +    G 
Sbjct: 5   IHQVAKIIDAMPTDLNETAISILLTDSRQVFFPDETLFFALKTKNNDGHRYISELYELGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS              +   LVV +T   L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSD----LQPEWEEYEDANFLVVVHTLFALQRLAAYHRNQFNVPVIGITGSNGKTV 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+       +                   +P        +     Q  +H  + 
Sbjct: 121 VKEWLYQVLHHDFNITH------------------SPRSYNSQIGVPLSVWQMNSHTQLG 162

Query: 189 ASSHGLDQHRLDG-----IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               G+ Q          I    G FTN+G+ H +  ++ +     K+ LF         
Sbjct: 163 VFEAGVSQPEEMAKLEAIINPTIGIFTNIGQAHQEGFKSMKQKCLEKLELFINCDVIICE 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D   +  +    +        G     +H+ KV  + N   +  S+ G    F 
Sbjct: 223 EENELVDECME--IACLSHKRLTWSRKGSNKSPLHIMKVEKLGNSTTIHYSILGMASQFT 280

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P      + NA+      I + +    + + +  L  V  R +     +    I   Y 
Sbjct: 281 IPFADNAAIENAIQVLATAIYLHLPLPDINQRMADLEPVAMRLDVRQGKNNTILINDTYN 340

Query: 364 H 364
            
Sbjct: 341 S 341


>gi|114763025|ref|ZP_01442455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544349|gb|EAU47357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. HTCC2601]
          Length = 477

 Score = 90.0 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 126/390 (32%), Gaps = 36/390 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + + N VS D+R I  G +FVA+   + DGH F+ QA+  GA A +VS      D +   
Sbjct: 20  DWEANGVSIDTRTIAKGDLFVALKAAR-DGHDFVAQALENGASAALVSRIPEGVDPAN-- 76

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
                +L+VD+ +  L         +    ++AVTG+ GK+S    ++ +          
Sbjct: 77  -----LLIVDDVQAGLEALGRAARARTRARVVAVTGSVGKTSTKDMLRVVLGAQSRVHAA 131

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +               P+ LA             + +  +  G      D  +   
Sbjct: 132 EKSYNNHWGV----------PLTLA---RMPEDVDFAVIEIGMNHPGEIAPLSDMARPDV 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   H+   ++ +     K  +FE L P  +  +          V      A   
Sbjct: 179 AMITIVAPAHLAAFESLEGIAREKAAIFEGLEPGGTAVVNGDLPVSPLLVAAGEARAAHV 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +     +G    +  V    +   V          F   +PG     N +    +  A+G
Sbjct: 239 ITFGEAEGNHHRVTHVDIGDSTTVVQGRAWRSPVLFKVSVPGRHFAVNGMGVLAVAHALG 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY-----VDYAHTSNSLEMILKNIRTITS 381
           +D AL +  L +     GR +           +     +D A+ +N     L        
Sbjct: 299 LDRALAVTALGQWTAGAGRGQRETILLDPVETHLSLELIDDAYNANP--ASLAASLE--- 353

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                V      RD   R   G+    L D
Sbjct: 354 -----VLAGAKTRDGVGRVSHGRRIAYLGD 378


>gi|85373182|ref|YP_457244.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
 gi|84786265|gb|ABC62447.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 498

 Score = 90.0 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 96/454 (21%), Positives = 154/454 (33%), Gaps = 47/454 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V  DSR ++ G +FVA+ G   DGH F+ +           + A            + P
Sbjct: 58  GVEMDSRDVRPGDLFVALKGESMDGHRFVEK-----------AFAAGAAAALVERPVDWP 106

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V++T   L   A     +     + VTG+ GK+ V   +    ++            
Sbjct: 107 HVLVEDTGAALEALAHAARERADAKRIGVTGSVGKTGVKEAIFAALEK--------SSRG 158

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 +        P+ LA+  +           +  +  G      D ++      T 
Sbjct: 159 QAHRSVRSYNNHVGVPLSLARMPARSR---YGVFEMGMNHAGEIAGLTDHVRPHVAVITT 215

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   HI+   + +A  +AK  +FE  L K   A+I AD    +++   A   G  ++S G
Sbjct: 216 IAPAHIENLGSIEAIADAKAEIFEG-LVKGGTAVIPADSEQYEQLRASAEKRGVTIVSFG 274

Query: 272 YQGKFIH--LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    L  + A +    VT  V      F    PGE  V NAL       A G D 
Sbjct: 275 RADHADVRLLDAIPAANGGSLVTAQVRDSRLCFTVAEPGEHWVSNALAVLAAVQAAGGDL 334

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIV 386
                 L +L  + GR         GG+  +    Y     S+   L+ +    + R I 
Sbjct: 335 GAAGLALAELGGLKGRGARHHVAVTGGKALLIDESYNANPASMRATLRQLGQTPATRRIA 394

Query: 387 VFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHG------I 436
           V G     GD        + + +     D A++  D    E     R     G       
Sbjct: 395 VLGSMKELGDFGPEFHRQLAEPMGEADLDYAVLVGD----EMLALARHLGKAGSGTLGKT 450

Query: 437 PGFIEKGNRIEAIRTAIEM--LNKQDVLVVAGKG 468
           P F       EAI  A++   L   D ++V  KG
Sbjct: 451 PAFAHCDGPAEAI-AALQEYGLTAGDAILV--KG 481


>gi|53804641|ref|YP_113756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
 gi|53758402|gb|AAU92693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
          Length = 449

 Score = 90.0 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 150/408 (36%), Gaps = 31/408 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L +L         +          E   + VS+D+R I+ G +F A+ G++ D H FI
Sbjct: 1   MNLGELAK-------HVPGAKLSGDAETSFDGVSTDTRAIRPGSLFFALRGDRFDAHDFI 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+             +       I +  P ++V + R+ L   A+    +    ++AV
Sbjct: 54  ADAVG---------GGAAALVVERRIDTPLPQIIVPDGRRALGAAAAAWRAQFDVPLIAV 104

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            G++GK++V   +  I   +     ++     +++           P+ L +  +     
Sbjct: 105 AGSNGKTTVTQMIAAILAAAFGEERRLATRGNLNNDV-------GLPLMLFELKAGHR-- 155

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  + +  +  G   +  +  +      TN  R+H ++  + +A  +    +    LP 
Sbjct: 156 -IAVLELGMNHPGEIAYLANLARPTVALVTNAQREHQEFMASVEATAHENGSVIAA-LPT 213

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A+  ADD  +    K A     RV+    +G               +V+I+     +
Sbjct: 214 DGTAVFPADDPCAGIWRKLAGTR--RVIDFARRGTATVSGTFRTSAGFAEVSITTPAGCW 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL GE  V+NAL A    +A G+    +   LE    V GR   + T +    I  
Sbjct: 272 QANLPLAGEHNVHNALAATAAALAAGVPPEAIRRGLESFRPVAGRGVQLRTRTGARLIDD 331

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            Y    +S+   +  +      RI+ +   G  G         +G+ A
Sbjct: 332 TYNANPDSVRAAIDVLAGFPQPRILALGDMGEVGVHGPEFHREIGRYA 379


>gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN]
 gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN]
          Length = 826

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 134/385 (34%), Gaps = 28/385 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   ++   +   E +I+ + +DSR +      +F A+   + DGH +I +   +G 
Sbjct: 5   IDKIAENINAKRLGDAEAQISFILTDSRSLCFPEETLFFALRSERNDGHHYIDELYHRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     L D  ++I      L VDN+   L    +         I+ +TG++GK+ 
Sbjct: 65  RNFVVEQ---LPDAFSSIYKQANFLQVDNSLLALQQLTTWHRSAFTIPIVGITGSNGKTM 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+       +         S  + ++++  P  ++L    S      +  +   
Sbjct: 122 VKEWLSQLLSFDHNVT--------RSPKSYNSQIGVPLSVWLLNESSE-----IGIIEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +     I+   G  T+LG  H +   + +     K+      L K++ A++Y 
Sbjct: 169 ISKRGEMEALQKIIQPTIGVLTSLGAAHQENFSSIEEKCKEKLL-----LFKDTQALVYQ 223

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFP 305
            D           +    +L    + K   L       +    TI    +      F  P
Sbjct: 224 MDDAIAAKCIEDFSYDGTLLGWSEKNKDAALFVEKISKDTTTSTIEYCWQTATKGKFTLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH- 364
              +  + N +  A + + +G+    + E +  L  V  R E          I   Y   
Sbjct: 284 FIDDASIQNCITCAAISLYLGMKPETLAERMPMLEPVAMRLEVKEGQHGCTLINDSYNSD 343

Query: 365 -TSNSLEMILKNIRTITSGRIIVVF 388
             S  + +   N R     R   + 
Sbjct: 344 INSLDIALDFMNRRPDQQKRARTLI 368


>gi|313205082|ref|YP_004043739.1| udp-N-acetylmuramoyL-tripeptide--d-alanyL-d-alanine ligase
           [Paludibacter propionicigenes WB4]
 gi|312444398|gb|ADQ80754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paludibacter propionicigenes WB4]
          Length = 434

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 133/393 (33%), Gaps = 32/393 (8%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR   +G +F A+ G+  D + F   A+  G    VV  A    D           
Sbjct: 13  ICTDSRVCPSGSLFFALKGDNFDANAFALSALKNGCSYAVVDEAEYAIDE--------RF 64

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++V+N  + L   A+    +    ++ +TGT+GK++    +  + +      F  G  + 
Sbjct: 65  ILVENVLESLQELATYHRRQLGTKVIGITGTNGKTTTKELIAAVLKEKYNILFTQGNLNN 124

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                       P        ++ +         ++A +   +           G  TN+
Sbjct: 125 HIGVPLTLLQLKPE-----HEIAVIEMGANHPEEIKALAEIAE--------PDYGIITNV 171

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H++   + +     K  L+E +        I  ++ +  ++   +         + Y
Sbjct: 172 GMAHLEGFGSFEGVKKTKRELYEYIYKAGKAIFINKNNEHLLKMAVDSGFVVNNENVISY 231

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                   ++ A+       + ++        FD    L G +   N L A  +    G+
Sbjct: 232 SLDKNSSSRIKAVVTDCSPFLEMKCFIGKNDSFDISTKLIGAYNAENVLAAVTIGEYFGL 291

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   +   LEK +    R +   T      I   Y     S++  + N   +      ++
Sbjct: 292 NKEELTAGLEKYNPQNNRSQLTITE-NNKLIIDTYNANPTSMKAAILNFAQMNVEGKTLI 350

Query: 388 FGCG---GDRDQGKRPIMGKIA--LDLADIAIV 415
            G     G++   +   +  +     LAD+ +V
Sbjct: 351 LGDMLELGEQSSAEHQGIIDLLKQNKLADVLLV 383


>gi|134294643|ref|YP_001118378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
 gi|134137800|gb|ABO53543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
          Length = 468

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 135/413 (32%), Gaps = 31/413 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                         VS+DSR    G +FVA+ G + D H F+            V++  +
Sbjct: 15  GAVVHGDPATTFERVSTDSRTAGPGDLFVALKGERFDAHDFLGD----------VAARGA 64

Query: 79  LQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
                A + +   + VV+   TR  L   A     +    ++AVTG++GK++V   +  I
Sbjct: 65  AAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASI 124

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +  +  ++     +++           P+ L +  +      +  + +         
Sbjct: 125 FAAAVGADARLATAGNLNNDI-------GVPLTLLRLSAAHRLAVIE-LGMNHPGETDVL 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RL           N  R+H ++  T +A   A                ++  D     +
Sbjct: 177 ARLAA--PTVALVNNAQREHQEFMATVEAV--ALEHAAVIHALAPDGVAVFPADDAYAGI 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            + A      +    +  +     +V    +  ++ I              GE    NAL
Sbjct: 233 WRVAATGNRILDFALHDAQRQVGAQVTGRLHGGELAIDTPSGALTVRLRALGEHNARNAL 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMI 372
            A    +A G++ A +   LE    V GR +    +     G  +  D Y    +S+   
Sbjct: 293 AATAAALAAGVELAAIGRGLEAFEPVKGRLQVRRADVGSLAGATVVDDTYNANPDSMRAA 352

Query: 373 LKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRS 422
           +  +    + R++V+   G  GD        +G  A     D      D  R 
Sbjct: 353 IDVLAAQAAPRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRD 405


>gi|288958919|ref|YP_003449260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
 gi|288911227|dbj|BAI72716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
          Length = 498

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 131/384 (34%), Gaps = 29/384 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V+ DSR +  G +FVAI G   DGH F+             + A  +      + ++ 
Sbjct: 30  TGVAIDSRKVAPGDLFVAIRGPNFDGHAFVGA------ALAAGAVAALVDHPPDGLPADA 83

Query: 91  PILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           P+L+   +  + ++             I+ VTG+ GK+     ++ +    G +    G 
Sbjct: 84  PLLIAPVDPLEAMAAMGVVARANCGARIIGVTGSVGKTGTKETLRHVLSAQGATYATEGS 143

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +  +          A   G    ++   K      
Sbjct: 144 LNNHWGV----------PLSLARLPADSAYGVFELGMNHAGEIGPLSRQV---KPHVAII 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+++    +A  +AK  +FE L P     +   +  Y++       +    V  
Sbjct: 191 TTVEAAHLEFFSGVEAIADAKAEIFEGLDPNGVAVLNRDNGQYARLAAAARRHGLSHVWG 250

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +     L           VT  + G+   +    PG   V N+L       A+G D
Sbjct: 251 FGTDEKADARLLDCSLHATCSAVTAVIRGERLQYCLSQPGRHWVMNSLSVLLAVKALGGD 310

Query: 329 SALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTITS---G 382
            A     L  L  V GR         +G    +D  Y  +  ++   L+ +  I     G
Sbjct: 311 VATAARALSSLPSVKGRGTRRRIQLPQGAFTLIDESYNASPAAMAATLEVLGKIDPGAGG 370

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIA 406
           R + V G    R+ G R     IA
Sbjct: 371 RRVAVLGDM--RELGDRADALHIA 392


>gi|295394740|ref|ZP_06804955.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972336|gb|EFG48196.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 452

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 144/413 (34%), Gaps = 46/413 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +VVSSA    +           P++   +    L            +  +A+ GT 
Sbjct: 60  GADTVVVSSAIRHTNPEIVRAEELGIPVIHRSDALATLME---------GKRTIAIAGTH 110

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S      Q +G           +S    +    +          S  S      
Sbjct: 111 GKTTTTSMTTVALQAAGKD-PSFAIGGQLSKTGTNAHAGSGDVFIAEADESDGSFLKYR- 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                 G  TN   DH+D++ + +    A +     +       
Sbjct: 169 -------------------PEVGVITNAEADHLDHYGSWERVREAFVEFGSHVGNMGGTL 209

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+ ADD  +  + + A   G  V+  G                   V+I+ EG+++ F  
Sbjct: 210 IVCADDKGAASIGREAREQGTNVILYGESDIADARVNASTHGQGVSVSIAFEGQEYAFDI 269

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG +   NA  A     A+G D   +++ LE       RFE  G    G R+Y DYAH
Sbjct: 270 ALPGTYNALNATAAFLSARAVGGDPQGIIQGLESFTGTRRRFELRGIEK-GVRVYDDYAH 328

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
               +  +L   + +   S ++ V+F      R +       + AL LAD  IV D  P 
Sbjct: 329 HPTEVTALLTAAKKVVDPSNKVHVIFQPHLFTRTKNFYREFAR-ALSLADDVIVLDVFPA 387

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            EDP      E I  E+   +       +   A+ T +E +   D+++  G G
Sbjct: 388 REDPIPGVTGELIAREVTSDVTYVPAFSD---AVPTVVERVKPGDIVLTVGAG 437


>gi|218296765|ref|ZP_03497471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
 gi|218242854|gb|EED09388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
          Length = 436

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 145/456 (31%), Gaps = 54/456 (11%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            +  PE + + +   +      + ++   S  +  G++FVA+ G++  G  F  +A+A+G
Sbjct: 15  REVTPEWVAEATGGRLHPGGGPVRDLHWHSGQVGEGFLFVALPGSRAHGREFAGEALAKG 74

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++                    + V++  K L      L    P  ++AV G+SGK+
Sbjct: 75  ASLVLSDRPGRAT------------VEVEDPYKALIRLGRALRDLFPGPVVAVGGSSGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +          +  +G  +   +      L         +A   +   GV  V  
Sbjct: 123 TAKEAL----------AQGLGFPAPEGNQNTAPPLARFFLKLPQEAPGAVVELGVDRVGE 172

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            A    L +  L  +  +         D     + +     A M L  +   +   A  +
Sbjct: 173 MAELMELARPDLAVLTALGEEHLLAFGDLKGVVEEEMGLLKAPMALVSQQAKEVLLAFGH 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D                  + G+       + +  +  + +       +      P P
Sbjct: 233 RVD----------------WPTYGFGQATFRGEGLELLPQESRFR----YRGLPVRVPYP 272

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G      AL A      +G D   V E L  L + PGR E       GG ++++ A+ +N
Sbjct: 273 GLGPALGALAAMAAAEVLGWDLLEVAERLAHLRLPPGRMER---REIGGVVFLNDAYNAN 329

Query: 368 SLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            L             GR   V G   +  +    +  ++A + A    +T   P    P 
Sbjct: 330 PLSVKAGLAWLAAQPGRKWAVLGEMRELAEKALELHLEVAEEAA-RLGLT---PLYLGPF 385

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                 + G        +   A+      +   D++
Sbjct: 386 AKAQAALGG----EAVEDLEAALAWLKARVRPGDLV 417


>gi|302389517|ref|YP_003825338.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200145|gb|ADL07715.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
          Length = 461

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 149/422 (35%), Gaps = 46/422 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH     A  +GA+ +VVSSA    +      I+++ P++   +    L   A+R     
Sbjct: 56  GHD---AANIRGADLVVVSSAIPPTNPEYVEAIKNDIPVIHRADMLSTL--MATR----- 105

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G  GK++  S +  + ++ G+S   +     ++    +  L           
Sbjct: 106 --KGIAVSGAHGKTTTTSMISLVLEKGGMSPTVV-IGGELNDIGGNATLGKGE------- 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           +           +       TN+  DH+D+++  ++   A  R 
Sbjct: 156 -------------YMVAEADESDGSFLKLTPYIAVVTNIENDHMDHYKDMESMKEAY-RK 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   L K+  A++  D+ + ++VMKR                      +  + ++ +   
Sbjct: 202 FIMNLKKDGFALLGTDNEHVRDVMKRVDVPYFTYGINYPADYMPKNIHIEGVDSRFE-VY 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +    +PG   +YNA  A  +   +G+    +   L+    V  RF+ +G   
Sbjct: 261 YRNERLGELELHVPGMHNIYNATAAVAVGHRLGLKMEDIAGALQAFRGVQRRFQLIG-EV 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
            G R+  DYAH    ++  LK  + +   ++  VF      R +      G  A + AD 
Sbjct: 320 GGVRVVDDYAHHPTEIKATLKAAKLLNPNKLYAVFQPHRYTRTKMLAEEFGN-AFEDADE 378

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I+T      E P        I   +           ++ +      E +   D ++  G
Sbjct: 379 VIITRLYSAGEAPIPGVSSMLIVEALKRSGKNVTYIDDKEKIPDYLAERVVPGDFVLTIG 438

Query: 467 KG 468
            G
Sbjct: 439 AG 440


>gi|325288380|ref|YP_004264561.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963781|gb|ADY54560.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score = 89.6 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 124/369 (33%), Gaps = 25/369 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++V   + ++   + +     G TS+   F  D  L T        A   L
Sbjct: 483 IAVTGTNGKTTVVRMINKVLLENMVRV---GMTSSEGVFINDKLLVTGDMTGPQSAQIVL 539

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEE 236
               V    +E +  G+ +  L          TN+  DH+  +  +     AK   L  E
Sbjct: 540 RHPDVQAAVLETARGGILRAGLAYDYADVAVITNVSDDHLGQYGIETVEEMAKVKMLVAE 599

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-----------KVCAI 285
            + K    ++ ADD       KR               K                    +
Sbjct: 600 RVNKYGYVVLNADDPIVAGFDKRTEAKVIYFSLDPANRKLCKHIALGGTGIFVDKNQIKL 659

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP-- 343
                V    + ++    +    +  + N L A G C A+G  ++ + + L+K       
Sbjct: 660 GQGFDVQQICKIQNIPLTWSGKAKHNIENILAAIGACWALGYSASQMRKSLKKFGSENKD 719

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
                      G  I +DYAH    L+  +  +R I   RII   G  GDR         
Sbjct: 720 NYGRLEYYEVNGVTIILDYAHNCAGLKEAISTLRQIKKRRIIGCIGLPGDRRNEMVKKYA 779

Query: 404 KIALDLADIAIVTDDNP-RSEDPEKIR-----AEIIHGI--PGFIEKGNRIEAIRTAIEM 455
           +IA    D   + +D   R     +I        I  G       +  +  E+ R AI  
Sbjct: 780 RIAAQGFDDIFIKEDLCKRGRQTGEIAEILHNELIKAGFQEKNLKKVLDEKESFRQAISQ 839

Query: 456 LNKQDVLVV 464
               D++VV
Sbjct: 840 AEPGDIVVV 848


>gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
 gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
          Length = 487

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 146/461 (31%), Gaps = 50/461 (10%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   S D+R ++ G +F AI G   DGH F+  A+ +       + A  +    A   
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALEK------GAGAAVVAAARANEF 78

Query: 88  SNT-PILVVDN-----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
               P+L V         + +         +    I+AVTG+ GK+     ++ +    G
Sbjct: 79  EGVGPVLAVPGEDEDPVLEAMRRLGLAARARTGAAIVAVTGSVGKTGTKEALRHVLSAQG 138

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +   +   +               P+ LA               +  +           
Sbjct: 139 ATHASVASYNNHWGV----------PLTLA---RMPEQTRFGVFEIGMNHGAEILPLTAM 185

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      T +   HI++ ++  A  +AK  +F   L     A+I  D+   + ++  AH
Sbjct: 186 VRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSG-LKPGGVAVINRDNPNYERLLAHAH 244

Query: 262 --NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              AG  +    +    +   ++    +   V  SV G    +    PG     N+L   
Sbjct: 245 ASRAGRVITFGEHAAADVRANRILTRPDVSVVDASVMGVPLTYQLGTPGRHVAMNSLGVL 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-RGGRIYVD--YAHTSNSLEMILKNI 376
               A+G D A     L  L    GR E        G    +D  Y     S+   L  +
Sbjct: 305 ACIHALGADLARAALSLAALKPPVGRGERTALRVGDGEAFLIDESYNANPASIRAALATL 364

Query: 377 RTIT---SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             I     GR I V G     G   +     +           +             + A
Sbjct: 365 AGIETGAKGRRIAVLGDMKELGAAGETHHRELADAVAGHGIDVVF--------AVGPLMA 416

Query: 431 EIIHGIPGFI--EKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
            +   +P  +        E +  A+   L   D ++V  KG
Sbjct: 417 HLFEALPMAVRGTAAPSAEGVTDAVLATLRPGDAVMV--KG 455


>gi|298252074|ref|ZP_06975877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546666|gb|EFH80534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 476

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 150/456 (32%), Gaps = 48/456 (10%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP--- 91
            DSR  +   +FVAI G + DGH FIP           ++ A        T+  + P   
Sbjct: 34  HDSRQYERDDLFVAITGARVDGHRFIPA----------IARAGGAGALCTTLSEDVPAGF 83

Query: 92  -ILVVDNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             LVV +  K L   A     + PE   + +TG+SGK++    +          +  +G 
Sbjct: 84  LQLVVPDVVKALQATARVRVQRQPETLKIGITGSSGKTTTKEAI----------AAVLGR 133

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ L +  +         + + A   G  +   + I     S 
Sbjct: 134 VAPTLKTYASYNNELGYPLTLLRLEAEHR---YAVLEMGAEWVGELRGLCETIACPDWSV 190

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
                     H    A          ++L  E  A +  DD   + + ++          
Sbjct: 191 ITTVGAAHLKHFGSLANVAIAKSELVQVLSPEGIAFLNYDDPVVRAMKEKTRAR-VIYYG 249

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G       L          + T+ +E +D      LPG   +  AL AA +  A  I  
Sbjct: 250 QGDGAAVRALHVEERGLLGSRFTLRIEDEDVPVQLRLPGTHGITTALAAAAVGSAANIPL 309

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA-----HTSNSLEMILKNIRTITSGRI 384
             + E LE L  V GR    G     G   +D       H+  ++   ++       G+ 
Sbjct: 310 ESIRESLEALSPVQGRGVVKGGAGPNGSTLIDDTYNAIRHSIIAMAQAMQATTIAPQGKR 369

Query: 385 IVVFG---CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-----RAEIIHGI 436
            VV G     G+  + +    G       D  +V  DN R      +     R  I H  
Sbjct: 370 WVVLGELFEQGEHTRDEHLASGLGLAGKVDYLVVLGDNARYYMEGALQAGMPRKAIYHFS 429

Query: 437 PGFIEKGNRIE---AIRTAIEM-LNKQDVLVVAGKG 468
               +  +  E   AI + ++  +   D+L++  KG
Sbjct: 430 VDTTKSTDVEEGKRAIASLLKEKVTPDDLLLI--KG 463


>gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium resistens DSM 45100]
          Length = 516

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 92/497 (18%), Positives = 160/497 (32%), Gaps = 55/497 (11%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ- 62
           +L      E+     +      + K+   V  DSR I+ G IF+A+ G + DGH +    
Sbjct: 15  ELTVGKIAEITGG-ELVDGADPDTKVLGPVEFDSRRIKPGGIFMALPGAQVDGHDYAASA 73

Query: 63  --------AIAQ--GAEAIVV-SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS---- 107
                    + +  GA A+V  S     +  +A+   +            +   A     
Sbjct: 74  AEQGAALLVVGKRVGAPALVAPSVELRQEASNASAFEHDTQGHGAAVLAAIDRLARFNTD 133

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            L  +H   ++ VTG++GK+S    +  I + +G +    G          +N +  P  
Sbjct: 134 ALVAEHGMTVVGVTGSAGKTSTKDLIGAILREAGPTVAPPGS--------FNNEIGLP-- 183

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                AL            + A   G  +H  +      G   N+G  H+    ++ A  
Sbjct: 184 ---YTALRAEEGTKYLVSEMSARGVGHIRHLTEVTPPNIGVVLNVGSAHLGEFGSRDAIA 240

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  L E  LP+   A++ ADD     +  R H    R  +     ++   +     + 
Sbjct: 241 QAKGELVEA-LPENGLAVLNADDDKVAAMAARTHARVVRFSTSQETCEWAGREVAVDYYA 299

Query: 288 KQQVTISVEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAIGID-SALVLEHL 336
                  V    F    P            G  QV NAL AA + +  G+  + +     
Sbjct: 300 SDIQLDEVARARFALHHPYGDPVAVELGVFGAHQVSNALAAAAVGMECGMSATDVARALN 359

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGR----IIVVFGCG 391
             +     R +       G  I  D Y     S+   +  +    SGR       V G  
Sbjct: 360 GHVAASVNRMDVRTRARDGVTIINDSYNANPESMRAGIDALAYTASGRDGAESWAVLGQM 419

Query: 392 ---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              GD        +G  ++      A++        + + +               +   
Sbjct: 420 GELGDDATEAHADLGHSLSQRRIRHAVIVG---NGVNQQALAHAAREDGVDTHVVEDADA 476

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+      L K DV++V
Sbjct: 477 AVNFLDLSLRKSDVVLV 493


>gi|254775004|ref|ZP_05216520.1| hypothetical protein MaviaA2_10069 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 519

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 83/515 (16%), Positives = 149/515 (28%), Gaps = 83/515 (16%)

Query: 5   DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           DL      +++      I       R++   V  DSR +  G +F+A+ G + DGH    
Sbjct: 3   DLTVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHDHAE 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPE---- 115
                       + A       A      P +V    +    L+                
Sbjct: 63  -----------SAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLA 111

Query: 116 ------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                              I+ +TG+SGK+S    V  +    G      G  +      
Sbjct: 112 ALAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHP 171

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                 T    YL   +S      +  ++  A                 G   N+G  H+
Sbjct: 172 WTVLRATADTDYLVLEMSARHPGNIAALAEIAP-------------PAVGVVLNVGTAHL 218

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----- 272
               +++A          + +P     ++  DD     + +       RV    +     
Sbjct: 219 GEFGSREAIART-KSELPQAVPASGVVVLNVDDPTVAAMAEVTAARVVRVSRAEHTEAGP 277

Query: 273 ---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  + L ++           +   +       + G+ QV NAL AA + +  G   
Sbjct: 278 SDVWAGPVSLDELARPGFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATV 337

Query: 330 ALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG------ 382
             V+  L     V   R +          I   Y    +S+   L+ +  I  G      
Sbjct: 338 EQVVAALAGAGPVSRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGA 397

Query: 383 ---RIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIH 434
              R   V G     GD    +   +G++A+ L  + + +V     RS         ++ 
Sbjct: 398 PARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSVSAMH-HGAVME 454

Query: 435 GI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G       G +   +   A+      L   DV++V
Sbjct: 455 GSWGSADKGAVNVPDAEAALELLRAELQPGDVVLV 489


>gi|158316859|ref|YP_001509367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158112264|gb|ABW14461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 492

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 127/466 (27%), Gaps = 36/466 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+            +R   +  V  DSR +  G +FVA+ G + DGH F    
Sbjct: 1   MIALTLAEVAAATGGRLTAGADRLAPVTSVVIDSRQVGPGALFVALPGERVDGHDFAA-- 58

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
                     + A           +  P  VV +    L+  A+ L    P  ++ VTG+
Sbjct: 59  ---------GAVAAGAVAVLGARETGVPT-VVADPAAALAALAAHLRDLAPATVVGVTGS 108

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +  R G +   +G  +           T P                  
Sbjct: 109 AGKTTTKDLLADLLGRLGPTVAAVGSFNNEIGLPLTLLRTEPD-------------TAFV 155

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A   G         +   G   N+G  H+  +   +    A      E       
Sbjct: 156 VLEMGARGIGHIATLCAVARPHVGLVLNVGSAHVGEYADGRNGIAAAKGELAEAA--TGL 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++ ADD     +  RA                    +V          ++   +    L
Sbjct: 214 VVLNADDPLVAAMAGRAGAQVVTFGRAAAADVRAERVEVGGDGRAAFDLLAGGERHRLRL 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +           AA         +       E       R E   T      +   Y 
Sbjct: 274 GLVGAHQVANALAAAAVATSLGLAPAEAAAALEEARPRSRWRMEVTTTPDGVVVLNDSYN 333

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQG---KRPIMGKIALDL-ADIAIVTDD 418
               S+   L  +  +  +GR   V G  G+           +G++A  L     +    
Sbjct: 334 ANPESMRAALTALMDMRGAGRAWAVLGPMGELGADADAAHDTLGRLAAGLGVSRLVAVGA 393

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             R             G           EA+      +   DV++V
Sbjct: 394 GARRVHQAAEHEGAWAG--ESTWVPGVDEAVALLAAQVRPGDVVLV 437


>gi|228469391|ref|ZP_04054405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
 gi|228309075|gb|EEK17705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
          Length = 461

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 121/362 (33%), Gaps = 35/362 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R  G     ++A+TG++GK++  +++      +GL     G   T           
Sbjct: 96  EFAYRYAGD--SMMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTS---------- 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 144 ---------LARQVALAPHAYYVIELSSFQLD--HMYQFRAHIAILLNITPDHLDRYDHK 192

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +        I + +D +++ ++K       R +    +G         
Sbjct: 193 MELYARAKMRITQNQQPTDYFISWIEDDWTQRLLKEPGMGAGRRIFFSTEGSSDDAVVAS 252

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVV 342
           +   +    +     +                 +A G    A+GI   ++   LE    V
Sbjct: 253 SHDGQLCFALQEPVLEMPESALALSGKHNVQNALAVGCAAQALGIKPEVIRALLETFTNV 312

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E++ +      I    A   NS    L+++R     +  ++   G D+      +M
Sbjct: 313 PHRLEYIASIDGVDYINDSKATNINSTWYALESMR-----KPTILILGGTDKGNDYNDLM 367

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  +  +T D+       K+       IP   E  +  +AI  A +M    D +
Sbjct: 368 DLVKEKVVGLIYMTTDS------AKLHRSFDSVIPRHEEVTSMRDAIAAARQMAQAGDTV 421

Query: 463 VV 464
           ++
Sbjct: 422 LL 423


>gi|222112153|ref|YP_002554417.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Acidovorax
           ebreus TPSY]
 gi|221731597|gb|ACM34417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           ebreus TPSY]
          Length = 482

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 84/415 (20%), Positives = 145/415 (34%), Gaps = 38/415 (9%)

Query: 1   MKLQ---DLIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M LQ   DL+    P   +      P+         V +D+R + AG +FVA+ G + D 
Sbjct: 11  MTLQQAFDLLRARIPGARLIGEGATPLA-------RVHTDTRTLAAGDLFVALKGERFDA 63

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+ QA          + A +    +    +  P + V +T   L   A+    +    
Sbjct: 64  HQFLSQART--------AGAAAAIAHAGLADAGLPGIEVPDTLAALGALATGWRAQRDLP 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GK++V   +  + +     +              +       P+ L      
Sbjct: 116 LIAVTGSNGKTTVTQMIAAVLRAWKGDAALAT--------QGNFNNDVGVPLTLL---RL 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   V +  +  G   +  D  +       N  R+H+++  T +A  +        
Sbjct: 165 RPGHEAAVVELGMNHPGEIANLADIARPTVALVNNAQREHLEFMHTVEAVAHENG-SVLS 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP +  A+  A DA++    + A    C  L+ G     +            QV I   
Sbjct: 224 ALPADGTAVFPAADAFTPLWRELAGTRHC--LTFGEAAGEVRCAAAQWGDGAWQVRIDTP 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              FD    + G   V NAL A    +A G   A +   L     V GR   +     G 
Sbjct: 282 NGAFDTRLAIAGRHNVTNALAATACALAAGGPLASIARGLAAFAPVNGRSRALAVRCGGR 341

Query: 357 RIYV---DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            I V    Y    +S+   ++ +  +   R++V+   G  GD+        G  A
Sbjct: 342 SITVVDDSYNANPDSVHAAIEVLAALPGPRLLVLGDMGEVGDQGSQFHAEAGAHA 396


>gi|295094720|emb|CBK83811.1| UDP-N-acetylmuramyl pentapeptide synthase [Coprococcus sp.
          ART55/1]
          Length = 87

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 1  MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
          M+  D++     E++           + +I +++ DSR +  G +FV   G + DGH +I
Sbjct: 1  MRASDVLKGTVYEILAG-------DIDCQITDLADDSRDVTQGTLFVCRRGARTDGHRYI 53

Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            A+A+GA  IVV+    +    +  R   P++ 
Sbjct: 54 DDAVARGAACIVVTDDIGIPAERSAGRWGIPMVY 87


>gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
 gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
          Length = 545

 Score = 89.2 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/502 (14%), Positives = 139/502 (27%), Gaps = 75/502 (14%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  DSR +Q G +FVA +G   +G+ +  +AI  GA  I ++   S     A  ++   
Sbjct: 33  DVVIDSRRVQKGSMFVAFIGEHTNGNDYALRAIEAGAACICLTQDASQDLICAAEQNGCV 92

Query: 92  ILVV--DNTRKFLSLFASRLY-GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           +L    D+   FL   AS          ++ +TG+ GK++      Q            G
Sbjct: 93  LLRAQNDDAETFLLRLASWWRTQNMHWIVVGITGSCGKTTTKDLCAQALATRYRVHATQG 152

Query: 149 PTST------------ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +                      +    P  LA              ++  S  G+  
Sbjct: 153 NFNNLIGVPLTILSASAQDEVIVCEMGMNHPGELATLSRVALPCLCVITNIGTSHIGILG 212

Query: 197 HR---------------------------------------------LDGIKLIAGSFTN 211
            R                                             +  +         
Sbjct: 213 SREAIATAKLEIITAIRGYTGSSKTHASEHASAQLPVQKPLPAEIPPMLLLDAHDDFCAY 272

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L R    Y    +A   A              + I      ++     + +    + +  
Sbjct: 273 LTRHAQQYEYDNEAGVPAHAGS-AHGGSNLRISYIDHGQHAAEPTPAASSSQAASISAGA 331

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +      +          I  +G+        P +    +AL A  +   +  D + 
Sbjct: 332 VCIRTQAPISLDEHGCAHTQLIYADGETHALSMSQPSKAACIDALFALAIADELACDRSA 391

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFG 389
            +  +E    V  R E +    +   I   Y  +  S+      +    +G  R I + G
Sbjct: 392 AIRAIEACSCVHMRLEEISRPHKPFIIDDSYNASPASI-AQALAVLHHCTGYTRHIAILG 450

Query: 390 CG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAE---IIHGIPGFIEK 442
                G++       +G   A    D+ +        ED +++      + +        
Sbjct: 451 EVGELGNQSARLHDYIGAYAAASGVDMLVFV----GGEDAKRMVEAARTMGYPAEQLHYV 506

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +  EA      +L + D ++V
Sbjct: 507 RDVHEAQLRIAPLLRETDAVLV 528


>gi|255659952|ref|ZP_05405361.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
 gi|260847826|gb|EEX67833.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
          Length = 465

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 139/424 (32%), Gaps = 45/424 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G +AIVVS+A    +       +  I     T+   S   + L  ++    +AV G  G
Sbjct: 70  RGVDAIVVSTAIPFDNPEVLAAKDLGI-----TKLHRSDINAALVNEY--KGIAVAGAHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +      +G+S   +     +     +  L T   +                 
Sbjct: 123 KTTTTSMLGVALTHAGVSPSVV-VGGEVPDLGTNAELGTSDYL----------------- 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S           +       TN+  DH+D++ T +    A  +  + +  +   A+
Sbjct: 165 ---VSEADESDGSFLKLHPHIAVVTNVEDDHMDHYGTMENIIKAFTQFIQNVDKETGYAV 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           I  D+   + + K                     K +          +    ++      
Sbjct: 222 ICFDNENLRNMAKNLDRKYITYAI--DHEADYRAKNITHSGTGISFDVFHGEEELGHVDL 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V +A+      ++IG+    +   L   H    RF+  G    G  I  DYAH
Sbjct: 280 NIPGRHNVLDAMACIVTGLSIGVSFEKMASGLAAFHGAKRRFQTKG-RVNGVWIVDDYAH 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   LK  +     R+I VF      R Q      GK A   AD+ ++TD     E
Sbjct: 339 HPTEIAATLKAAKETNPKRLICVFQPHRYSRTQLLHEEFGK-AFVSADVLVLTDVYAAGE 397

Query: 424 DP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
            P      + I  E+        + +  R +      + +   D+++  G G     I  
Sbjct: 398 APIPGISGQTIVDEVQRQSGQHVVYEPAREKLAAYLKDFVQPGDLVITMGAGD----IYK 453

Query: 477 NGEK 480
            GE+
Sbjct: 454 TGEE 457


>gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp.
           P1]
          Length = 352

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 15/170 (8%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRE----RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           + +I     E+            +      +  V  DSR    G +F+A+ G + DGH F
Sbjct: 40  RAMIEMTLAEVAAVTGGTLHGVSDEQAAVPVTAVEFDSRKAGPGALFLALPGERADGHDF 99

Query: 60  IPQAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPILVVDNT-------RKFLSLFASRL 109
              A+ +GA  ++              A +R     L   +           L   A  +
Sbjct: 100 AAGAVTRGATGVLAGRPVDAPAVVAPPAEVRDAHTYLGSVDPDGHGAAVLAALGRLARHV 159

Query: 110 YGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            G  P   ++ VTG++GK+S    +  +    G +       +       
Sbjct: 160 LGALPGLAVVGVTGSAGKTSTKDLLAAVLAPQGRTVAPPESFNNELGTPW 209


>gi|118467198|ref|YP_881536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
 gi|118168485|gb|ABK69382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
          Length = 533

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 83/515 (16%), Positives = 150/515 (29%), Gaps = 83/515 (16%)

Query: 5   DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           DL      +++      I       R++   V  DSR +  G +F+A+ G + DGH    
Sbjct: 3   DLTVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHDHAE 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPE---- 115
                       + A       A      P +V    +    L+                
Sbjct: 63  -----------SAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLA 111

Query: 116 ------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                              I+ +TG+SGK+S    V  +    G      G  +      
Sbjct: 112 ALAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHP 171

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                 T    YL   +S      +  ++  A                 G   N+G  H+
Sbjct: 172 WTVLRATADTDYLVLEMSARHPGNIAALAEIAP-------------PAVGVVLNVGTAHL 218

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----- 272
               +++A          + +P     ++  DD     + +       RV    +     
Sbjct: 219 GEFGSREAIART-KSELPQSVPASGVVVLNVDDPTVAAMAEVTAARVVRVSRAEHTEAGP 277

Query: 273 ---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  + L ++         + +   +       + G+ QV NAL AA + +  G   
Sbjct: 278 SDVWAGPVSLDELARPGFTLYHSHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATV 337

Query: 330 ALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG------ 382
             V+  L     V   R +          I   Y    +S+   L+ +  I  G      
Sbjct: 338 EQVVAALAGAGPVSRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGA 397

Query: 383 ---RIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIH 434
              R   V G     GD    +   +G++A+ L  + + +V     RS         ++ 
Sbjct: 398 PARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSVSAMH-HGAVME 454

Query: 435 GI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G       G +   +   A+      L   DV++V
Sbjct: 455 GSWGSADKGAVNVPDAEAALELLRAELQPGDVVLV 489


>gi|312140146|ref|YP_004007482.1| UDP-N-acetylmuramoyl-tripeptide-d-alanyl-d-alanin e ligase murf
           [Rhodococcus equi 103S]
 gi|311889485|emb|CBH48802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF
           [Rhodococcus equi 103S]
          Length = 506

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 147/502 (29%), Gaps = 70/502 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     ++   +        +    ++  V  DSR I  G +F+A+ G + DGH     
Sbjct: 1   MIPMTLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITPGGLFLALPGARVDGHDHAAG 60

Query: 63  AIAQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFA 106
           A+A            G  AIVV    +  + +  +  +       +         L   A
Sbjct: 61  AVAAGAVAVLAARPVGVPAIVVEPLGTSGNGALALEHD------RDGSGAAVLAALGKLA 114

Query: 107 SRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                +        ++ VTG+SGK+S    +  +    G      G  +           
Sbjct: 115 RASVDRLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALR 174

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 +L              + + A   G      +      G   N+G  H+    +
Sbjct: 175 ADADTRFL-------------VLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGS 221

Query: 223 QQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           ++A      ++            A++ ADD     +  R       V   G         
Sbjct: 222 REAIAETKGELPASLPSAADGGVAVLNADDPLVAAMADRTEARVVMVGLSGNADVRATDV 281

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKL 339
           ++         T++           + GE  V NAL AA + +  G     +        
Sbjct: 282 RLDDQARA-SFTLTCAAGAVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGGAA 340

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG-- 391
            V   R E    +     +   Y    +S+   +K + ++       + R   V G    
Sbjct: 341 PVSARRMEVRDRSDGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAE 400

Query: 392 -GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEK 442
            G     +   +G+ A+ L     I+         P +    +  G           I  
Sbjct: 401 LGPESVVEHDAIGRFAVRLDVTKLILVG-------PGRPVRAMYQGAVMEGSWGDEAIHV 453

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +   AI    + L   D+++V
Sbjct: 454 PDGASAIALLEQELRAGDLVLV 475


>gi|225552447|ref|ZP_03773387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
 gi|225371445|gb|EEH00875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
          Length = 463

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 141/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +  V S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFVCSREHESECIKYLNDNEELVFLLTSNVIKLLQTLASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  Q     K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQTIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLEGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y     S   +   I  +    +  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLIQEAVSMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|39936596|ref|NP_948872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650452|emb|CAE28975.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 479

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 149/454 (32%), Gaps = 41/454 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A       A   
Sbjct: 26  RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAGAALAVVEKA-----QRAKFA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P+LVVD+  + L         + P  ++AVTG+ GK+S    ++ +    G +   +
Sbjct: 81  PDAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTSTKEGLRGVLGAQGATHASV 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ LA+  +           +  +  G  +  +  ++    
Sbjct: 141 ASFNNHWGV----------PLSLARCPADTR---FAVFEIGMNHAGEIEPLVKMVRPHIA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--KRAHNAGC 265
             T +   H+++    +   +A        L     A++  D      +       + G 
Sbjct: 188 IITTVEAVHLEFFSGIEGIADA-KSEIFTGLEPGGIAVLNRDTPMFDRLCSNALRASVGR 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V           L  V    +   V  S+ G D  +   +PG     N+L         
Sbjct: 247 IVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLAAAELA 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILKNIRTIT-- 380
           G D AL    L ++    GR          G    +D  Y     S+   L  +      
Sbjct: 307 GADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLGRAEVS 366

Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             GR I V G     G R       + +    +  D+        R+        + +  
Sbjct: 367 GQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRN------LWDALSS 420

Query: 436 IPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
                  G+   A+    +  +   DV++V  KG
Sbjct: 421 GKRGGYAGD-AAALESQVVAAIRAGDVVMV--KG 451


>gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
 gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
          Length = 535

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 129/418 (30%), Gaps = 48/418 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V  DSR    G +FVAI G   DGH ++      GA A +V             +S+ 
Sbjct: 43  TNVVIDSRQAHEGSLFVAINGEHADGHAYVATLGDSGALAAIVDHEIP--------QSSV 94

Query: 91  PILVVDNTRKFLSLFASRLYGK-----------HPENILAVTGTSGKSSVASFVQQICQR 139
             LVVD+T K L   A     +            P +I+ +TG+ GK++    +  +   
Sbjct: 95  VQLVVDDTVKALGELARHNLAQRRAMAAAHPDAAPFSIVGITGSVGKTTTKDLLHALLGE 154

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +   +G  +             PS  +L                + A+  G   +  
Sbjct: 155 LGETVAPVGSFNNELGLPLTALQVGPSSRFL-------------IAEMGANHLGEIANLT 201

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                       +G  H+    + +    AK  +    +P     +  ADD +   +   
Sbjct: 202 HIAPPDVAVVLKVGNAHLGEFGSVERIAQAKSEIVRGEVPGGMTIL-NADDPHVAAMDAI 260

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNA 315
           A                 ++       +     +    +           +PG   V NA
Sbjct: 261 APGLVRWFGLEHATEHDDYVTADHVRMDDDGHAVFTLRQSDGAYQQVRLGIPGAHNVMNA 320

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFE----FVGTNSRGGRIYVDYAHTSNSLE 370
           L A  +    G+    +++ LE++  + P R                I   +    +S+ 
Sbjct: 321 LAATAVAQYFGLPLRHIVQVLEQVRAISPHRMAISIVRRPERPEFTLIDDSFNANPDSMR 380

Query: 371 MILKNIRTIT---SGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             +  I           I V G     G  +      +GK A++ +  A++   N   
Sbjct: 381 AGIDGIAAFNAAEPMLRIAVLGAMLELGPDETALHEAIGKYAVEQSVDAVIAVGNSND 438


>gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 456

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 85/484 (17%), Positives = 154/484 (31%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI              +  +    S    +  P ++VD+  K     A     K   ++L
Sbjct: 54  FIAT----------AFAQGAAATLSERPVAEAPYILVDDVLKAFQCLAKYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   KL +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSETAIAQAFSKLELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGRVHYFVKNDEKDQFEQLTKAVR---ESLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|240168221|ref|ZP_04746880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           kansasii ATCC 12478]
          Length = 524

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 92/517 (17%), Positives = 157/517 (30%), Gaps = 87/517 (16%)

Query: 5   DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           DL      +++      I P    +R++   V  DSR I  G +F+A+ G   DGH +  
Sbjct: 3   DLTVAQIADIVGGTLADISPQDAAQRRVTGTVEFDSRAIGPGGLFLALPGAHVDGHDYAA 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE------ 115
                       ++A       A      P +VV    + L+  A     +H        
Sbjct: 63  -----------SAAAAGAVAVLAARPVGVPAIVVT-PERSLAEGALAGVLEHDADGSGAA 110

Query: 116 ---------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                                 I+ +TG+SGK+S    V  + Q  G+     G  +   
Sbjct: 111 VLAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAAVLQPLGVVVAPPGSFNNEL 170

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                         YL   +S      +           L Q     I    G   N+G 
Sbjct: 171 GHPWTVLRAGRDTDYLILEMSARHPGNI---------AALAQIATPAI----GVVLNVGT 217

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+    +++A   A+ +        +S  +I   D  +   M     A    +S G  G
Sbjct: 218 AHLGEFGSREAI--ARTKSELPQAVPQSGVVILNADDPAVAAMAEVTAARVVRVSRGSTG 275

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                        + Q T+       +    + G+ QV NAL AA + +  G     V  
Sbjct: 276 DVWAGPVSLDELARPQFTVHAGATQAEVRLGVYGDHQVSNALCAAAVALECGATLDQVAT 335

Query: 335 HLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG----------- 382
            L     V   R +          I   Y    +S+   L+ +  I  G           
Sbjct: 336 ALGGAGPVSRHRMQVTTRADGVTVIDDAYNANPDSMGAGLQALAWIARGGSGAGSDLAAK 395

Query: 383 -RIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            R   V G     G     +   +G++A+ L  + + +V     RS         ++ G 
Sbjct: 396 RRSWAVLGEMAELGADAIAEHDRVGRLAVRLDVSRLVVVGTG--RSVSAMH-HGAVLEGA 452

Query: 437 ---------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     G +   +   A+      +   DV+++
Sbjct: 453 WGSWGAGADRGTVNVADADAALELLRAEVQPGDVILI 489


>gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
 gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
          Length = 487

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 87/464 (18%), Positives = 153/464 (32%), Gaps = 56/464 (12%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   S D+R ++ G +F AI G   DGH F+  A+ +        +A   +  +    
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALEK-----GAGAAVVAEARAKEFE 79

Query: 88  SNTPILVVD--------NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              P+L V         +  + L L A    G     I+AVTG+ GK+     ++ +   
Sbjct: 80  GAGPVLAVPGEGDDPVLDAMRRLGLAARARTG---AAIVAVTGSVGKTGTKEALRHVLSA 136

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G +   +   +               P+ L      L         +  +         
Sbjct: 137 QGATHASVASYNNHWGV----------PLTL---TRMLEDTRFGVFEIGMNHGAEILPLT 183

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++      T +   HI++ ++  A  +AK  +F   L     A+I  D+   + ++  
Sbjct: 184 AMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSG-LKPGGVAVINRDNPNYERLLAH 242

Query: 260 AH--NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           A    AG  +    +    +   ++    +   V  +V G    +    PG     N+L 
Sbjct: 243 AQASRAGRVITFGEHAAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLG 302

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILK 374
                 A+G D A     L  L    GR E        G    VD  Y     S+   L 
Sbjct: 303 VLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALS 362

Query: 375 NIRTIT---SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +  I     GR I V G   +     +   R +   +A +  D+               
Sbjct: 363 TLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVF---------AVGP 413

Query: 428 IRAEIIHGIPGFI--EKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           + A +   +P  +        E +  A+   L   D ++V  KG
Sbjct: 414 LMAHLFEALPMPVRGTAAPTAEGVTDAVLATLRSGDAVMV--KG 455


>gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 435

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 147/410 (35%), Gaps = 49/410 (11%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRER-KINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK   +      E           + +  +IN V  +S  ++   +F+AI G    G+ +
Sbjct: 1   MKKNYIFKMTLEE------FGISNFLDILEINNVLINSGEVRENDVFIAIRG----GNSY 50

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I +A  +GA  ++         +           +V+++ KFL  FA          I+ 
Sbjct: 51  IQEAAEKGA-YVIYDDKTKKTPYPKA-------FLVNDSIKFLQKFAENWRNILDLKIIG 102

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++V   + Q+           G          +N +  P  +     L   +S
Sbjct: 103 ITGSNGKTTVKDIIYQLLSTKYKGKKTEGNL--------NNHIGLPVSL-----LRAENS 149

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +  S  G         K   G  TN+G  H+++  +++  F AK  + +    
Sbjct: 150 DDFLVLEMGMSGFGEIDLLAAIAKPDYGIITNIGDSHLEFLGSRENVFKAKSEIIK---H 206

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            ++   +  DD +  ++       G +V + G        K +    +  +  ++   + 
Sbjct: 207 VKAKMFLNGDDPFLGDL------PGIKVSADGKSTADYRAKNINLSGDGTKFDLN---EG 257

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L GE  + N L    +    GI +  + +  + + +   RF+ +   +    I 
Sbjct: 258 LTLETNLIGEHNILNLLFGIAISEEFGIKTEDLADEFKNIKLTAMRFQKIENGNI-IYIN 316

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKI 405
             Y  +  S+E  +     I + R  VV        G++D      + KI
Sbjct: 317 DAYNASPISMEKAILTFSDIYNDRYKVVILGDMLELGEKDAEFHEELEKI 366


>gi|309798581|ref|ZP_07692856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
 gi|308117817|gb|EFO55218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
          Length = 162

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 16/150 (10%)

Query: 5   DLIYKD--FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           D++ KD  F E+I+Q   +   + +   + +  DSR  Q   +F  + G       F+  
Sbjct: 9   DILKKDDLFREIIDQ-GHYHYNYSDVVFDSICYDSRKAQENCLFF-VKGAAFK-KEFLLS 65

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           AIAQG    V    Y +         + P++VV + +K +SL A   YG   E   ILA 
Sbjct: 66  AIAQGLGWYVAEQDYEV---------DIPVIVVSDIKKAMSLIAMEFYGNPQEKLKILAF 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           TGT GK++ A F   I  +    +      
Sbjct: 117 TGTKGKTTAAYFAYNILNQQYRPAMLSTMN 146


>gi|89897954|ref|YP_515064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
 gi|89331326|dbj|BAE80919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
          Length = 448

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 166/471 (35%), Gaps = 50/471 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++ +D+  L+     +P     RKI+ V+ DSR ++ G +F A+ G   DGH F+ Q   
Sbjct: 4   ILLEDWVSLMLSDVKYPRSG--RKISGVAIDSRQVRPGDLFFALSGQCTDGHHFLKQ--- 58

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
               A   + A  +            ++VV +T + L              I+ +TG+ G
Sbjct: 59  ---AAQAGAVAAVVSKDYCGDSFGLDLVVVQDTTEALKEAGENQGHLFQGTIVGITGSIG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  +F +                   S  + +++LT P  + +A        +    +
Sbjct: 116 KTTTKTFAKTFLSSVYRV--------YASPKSYNSQLTVPLSLLMADG-----DEDFIIL 162

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  S  G  +  L  ++      TN+   H      Q     A+      +L      +
Sbjct: 163 EMGVSEPGNMRDLLSIVEPEISVITNIADQHAINFPDQGVRGIAE--EKSHILQTSRIQL 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D  +    +K++ ++     +   +    + K +        V IS    D DF   
Sbjct: 221 LPKDSPWYSHFIKQSPSSEKFSFAFYNETADFYYKAIQK----DSVIISTPEGDVDFAVS 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            P +    N L++  L   + +    ++     L + P RFE    N     I   Y   
Sbjct: 277 FPYKPAYSNLLISFSLAWLLDVPVDRIIHSCSDLQLPPMRFELSMRNGI-QVINDAYNAC 335

Query: 366 SNSLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIV------ 415
             ++   L  I   +  G++I++ G     G+  +    I+   AL  A+I         
Sbjct: 336 PEAMIAALDAIPNPSEGGKVILILGHMAELGNYSEEGHAIVANKALSKANIIFFIGEKWL 395

Query: 416 ------------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                           P ++  E+I   ++      + KG+R  A+ + + 
Sbjct: 396 SSQHLLKSSSCEVSFYPSAQSVEEILKSVVQQGDIVLLKGSRALALESLLS 446


>gi|255020009|ref|ZP_05292082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970538|gb|EET28027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 448

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 157/468 (33%), Gaps = 42/468 (8%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+  +     +Q  +  ++I+ V +D+R   +G +FVA+ G + DGH F+  A
Sbjct: 1   MIRYTLREIAQRTGGSLLQGTDPEKEIHGVGTDTRTHLSGRLFVALRGPRFDGHDFVEAA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA A++V                 P ++V +    L + A+    +   ++ AVTG+
Sbjct: 61  RKAGAAAVLVQRPSPG-----------PGVLVADPLAALQVLAAAWRRELGTSLAAVTGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++V   +  + ++SG      G  +               P+ LA+           
Sbjct: 110 CGKTTVKEILAAMLRQSGPCLATRGNLNNH----------IGVPLTLAELGPEHR---HA 156

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +  +  G         +       N G  HI+   +  A   A      E L     
Sbjct: 157 VVEMGMNHAGEIAVLTRMARPDLALINNAGPAHIENLGSIAAIA-AAKGEILEGLSAHGI 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  DD Y+    +RA     R        +               + +     +    
Sbjct: 216 AVINGDDEYADYWAERAPGEVWRFSLDDRPARVRGQW--RPQGKGGVLDLRAPQGNVSLR 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G     N L A    +A+ +    +   +E L   PGR ++         +   Y 
Sbjct: 274 IPLSGRHNGANVLAATTAALALNLGLDQIARAVEALTPAPGRLQWREGKGGSRILDDTYN 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-P 420
               S+E  L+ +      R +V+      G   +     MG  A  L    + T  +  
Sbjct: 334 ANPASVEAALRVLAEQPGRRYLVLGDMAELGADAELHHQQMGGHARALGIDGVFTLGSLS 393

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           R+              P       R   +   + ML    V++V  KG
Sbjct: 394 RTTS--------RAFGPAGTHFVEREALVDAVLSMLAPDAVVLV--KG 431


>gi|167630129|ref|YP_001680628.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592869|gb|ABZ84617.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 461

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 145/406 (35%), Gaps = 43/406 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            +      +       N  I    +   +L            +  +AV GT GK++ ++ 
Sbjct: 73  TAVKGDNPELRLAKERNLTIWHRADLLAWLME---------QKKGIAVAGTHGKTTTSAM 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + ++ GL                         I +   +  +            ++ 
Sbjct: 124 IGLMLEQCGLDP----------------------AIIVGGEIREIEGNAKWGQGDFMAAE 161

Query: 193 GLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +  R    +       TN+  DH+D++Q+ +A   A    F E L  +   ++ ADD 
Sbjct: 162 ADESDRSFLKLSPWMAVITNIEADHLDHYQSFEAIVEA-FYQFTERLSGDGILLLCADDP 220

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +E+ +R          +  +  +  +   C     Q      E +    +  +PGE  
Sbjct: 221 LLQEMAQRVTARRVVTYGMKAKADYRAVDLSCTGKGSQADIFRGEERLGRLMLSVPGEHN 280

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NAL A      IGI  A     L +   V  RF+ +G  ++G  +  DYAH    ++ 
Sbjct: 281 MSNALAAVACADLIGIPFAAAAAALSRFGGVGRRFQRMG-EAKGVSVVDDYAHHPTEVKA 339

Query: 372 ILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----- 425
            L   R    GR++ VF      R +      G+ A D AD+ ++++  P  E P     
Sbjct: 340 TLAAARQTQPGRLVAVFQPHRYTRTRDLYREFGE-AFDAADVVVLSEIYPAGEAPIPGVS 398

Query: 426 EKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +  ++         +   ++ E +R   +++   D+++  G G+
Sbjct: 399 SGLIRDVYERRCGRKALYAADKEELLRRLQDLVKPGDLVLTMGAGN 444


>gi|332299375|ref|YP_004441296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176438|gb|AEE12128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 461

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 127/362 (35%), Gaps = 35/362 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R  G     ++A+TG++GK++  +++      +GL     G   T           
Sbjct: 96  EFAYRYAGD--SVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTS---------- 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  +E SS  LD   +   +       N+  DH+D +  Q
Sbjct: 144 ---------LARQVALAPHAYYVIELSSFQLD--HMYQFRAHIAILLNITPDHLDRYDHQ 192

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +        I + +D +++ ++K       R +    +          
Sbjct: 193 MELYARAKMRITQNQEPTDYFISWIEDDWTQRLLKEPGMGAGRRIFFSTKASSDDAVVAS 252

Query: 284 AIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           + + + +  +     +  +    L G+  V NAL       A+G+   ++   LE    V
Sbjct: 253 SHNGQLRFALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETFTNV 312

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E++ +      I    A   NS    L+++R     +  ++   G D+      +M
Sbjct: 313 PHRLEYIASIDGVDYINDSKATNINSTWYALESMR-----KPTILILGGTDKGNDYNDLM 367

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  +  +T D+       K+       IP   E  +  +AI  A +M    D +
Sbjct: 368 ELVKEKVVGLIYLTTDS------AKLHRSFDSVIPRHEEVTSMRDAIAAARQMATAGDTV 421

Query: 463 VV 464
           ++
Sbjct: 422 LL 423


>gi|41407999|ref|NP_960835.1| hypothetical protein MAP1901c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396353|gb|AAS04218.1| MurF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 519

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 82/515 (15%), Positives = 149/515 (28%), Gaps = 83/515 (16%)

Query: 5   DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L      +++      I       R++   V  DSR +  G +F+A+ G + DGH    
Sbjct: 3   ELTVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHDHAE 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD--NTRKFLSLFASRLYGKHPE---- 115
                       + A       A      P +V    +    L+                
Sbjct: 63  -----------AAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLA 111

Query: 116 ------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                              I+ +TG+SGK+S    V  +    G      G  +      
Sbjct: 112 ALAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHP 171

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                 T    YL   +S      +  ++  A                 G   N+G  H+
Sbjct: 172 WTVLRATADTDYLVLEMSARHPGNIAALAEIAP-------------PAVGVVLNVGTAHL 218

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY----- 272
               +++A          + +P     ++  DD     + +       RV    +     
Sbjct: 219 GEFGSREAIART-KSELPQAVPASGVVVLNVDDPTVAAMAEVTAARVVRVGRAEHTEAGP 277

Query: 273 ---QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                  + L ++           +   +       + G+ QV NAL AA + +  G   
Sbjct: 278 SDVWAGPVSLDELARPGFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATV 337

Query: 330 ALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG------ 382
             V+  L     V   R +          I   Y    +S+   L+ +  I  G      
Sbjct: 338 EQVVAALAGAGPVSRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGA 397

Query: 383 ---RIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIH 434
              R   V G     GD    +   +G++A+ L  + + +V     RS         ++ 
Sbjct: 398 PARRSWAVLGEMAELGDDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSVSAMH-HGAVME 454

Query: 435 GI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G       G +   +   A+      L   DV++V
Sbjct: 455 GSWGSADKGAVNVPDAEAALELLRAELQPGDVVLV 489


>gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
 gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
          Length = 824

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 76/493 (15%), Positives = 166/493 (33%), Gaps = 54/493 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               +   ++       + +I  + +DSR +      +F A+  ++ DGH +IP+   +G
Sbjct: 4   TIDRITTLINAERYGEADARIGFILTDSRSLCFPEETLFFALKSDRNDGHRYIPELYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
                 + A  +   S++  ++   L V +T K L + A +        I+ +TG++GK+
Sbjct: 64  VR----NFAVEVLPDSSSSYTDANFLKVADTLKALQMLAKKHRETFHIPIIGITGSNGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  ++L    + +          
Sbjct: 120 MVKEWLYQLLMPERFVT--------RSPRSYNSQIGVPLSVWLLNENTQIGLFEAGISRP 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           +      +  R        G  T +G  H +   + +     K+RLF      ++     
Sbjct: 172 KEMDALREIIR-----PTIGVLTTIGTAHQENFASIEEKCREKLRLFR---HAQTIVYCT 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPL 306
            +   ++ + + +        S   +   +++ ++        V+       +  +  P 
Sbjct: 224 DNALTARLISEESLEGEPIAWSTKDENAQLYVSRIEKQAEHTTVSYRYKNHIEGQYTLPF 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH-- 364
             +  V N++    + + +GI  A + + +  L  V  R E          I   Y    
Sbjct: 284 IDDASVENSITCTAVALYLGIAPAALAKRMAHLEPVAMRLEVKEGQHGCTLINDSYNSDI 343

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            S  + +   N R    GR   +     ++   K   + +    LA          R E 
Sbjct: 344 HSLDIALDFMNRRPDHKGRKRTLILSDIEQTGRKPADLYREVSHLAAK-------RRVEK 396

Query: 425 PEKIRAEIIH-----GIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAG------------ 466
              I  ++       GI       +    I   A + L   +V+++ G            
Sbjct: 397 FIGIGRQLCAHADSIGITDKCFFPDCESFIHSEAFDKLR-NEVILIKGARRFGFDRLTDL 455

Query: 467 ---KGHETVHIVT 476
              K HET   V 
Sbjct: 456 LVKKVHETTLEVN 468


>gi|121535917|ref|ZP_01667713.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
 gi|121305488|gb|EAX46434.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
          Length = 460

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 134/414 (32%), Gaps = 44/414 (10%)

Query: 70  AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AIVVSSA    +    A       I    +    L   A R         +A+ G  GK+
Sbjct: 67  AIVVSSAIPESNPEIRAAREQGLKIFHRADIVAAL--MAER-------EGIAIAGAHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  + +++GL                           L             ++  
Sbjct: 118 TTTSMIALVLEKAGLDPTV--LIGG----------------ELEYIGGNAKYGKGRYLVA 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA            +       TN+  DH+D+++T +           ++ PK+  A++ 
Sbjct: 160 EADESD---GSFLKLTPRLAVVTNIENDHMDFYETMENILFTFKEFLYKIHPKDGLAVLC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D++Y + +                        +V                       +P
Sbjct: 217 FDNSYIRNIAASLDRPYISYAINHDAEFTARNIRVHGPAIIYD-AYRHNELLGTIRLNVP 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N+L A  + + +G+  + V + L        RF+  G    G  +  DYAH   
Sbjct: 276 GRHNVANSLAALAVGLHVGLTFSQVADGLASFLGAKRRFQTKG-RVNGIWVVDDYAHHPT 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
            +   L   R +   R+I VF      R +  R   G+ A + ADI ++TD  P  E P 
Sbjct: 335 EITTTLLAAREMRPKRLICVFQPHRYSRTKFLRSEFGR-AFEPADILVLTDIYPAGEKPI 393

Query: 426 -----EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
                E I+ E+            +R    R   E+    D+++  G G+    
Sbjct: 394 PGITGEVIKEEVERQTNRLVTYIPDRNNIARYLAEIAEPGDLIITMGAGN-IYQ 446


>gi|15827430|ref|NP_301693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae TN]
 gi|221229907|ref|YP_002503323.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
 gi|20138886|sp|O69556|MURF_MYCLE RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3080477|emb|CAA18672.1| udp-n-acetylmuramoylalanyl-d-glutamyl
           -2,6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Mycobacterium leprae]
 gi|13092980|emb|CAC31291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae]
 gi|219933014|emb|CAR71005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 517

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 88/519 (16%), Positives = 155/519 (29%), Gaps = 86/519 (16%)

Query: 5   DLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           DL      E++    + I P +  ER++   V  DSR +  G +F+A+ G + DGH    
Sbjct: 3   DLTVARVTEIVGGALVDISPEEAAERRVTGSVEFDSRAVGPGGLFLALPGARSDGHDHAA 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV-DNTRKFLSLFASRLYGKHPE----- 115
                       + A       A      P +VV  + R         L           
Sbjct: 63  -----------SAIAAGAVAVLAARPVGVPAIVVAPDPRTGDGGLTGVLEHDADGSGAAV 111

Query: 116 --------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                                I+ +TG+SGK+S    V  + +  G         +    
Sbjct: 112 LAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAVVLELLGEVVAPPESFNNELG 171

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T              S     + + A   G             G   N+G  
Sbjct: 172 HPWTVLRAT-------------RSTDYLILEMSARRPGNIAALAAIAPPKIGVVLNVGTA 218

Query: 216 HIDYHQTQQAYF-------NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           H+    +++A          A M+    +L  + PA+    DA    V++ +  +     
Sbjct: 219 HLGEFGSREAIARTKTELPQAIMQSGVVILNVDDPAVAAMADATVARVIRVSRGSYSHPG 278

Query: 269 SVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           S      +     +   A       T        +    + G+ QV NAL AA + +  G
Sbjct: 279 SPNSPDVWTGPVSLDELARPRFTLHTRDPRAGATEIQLGVYGDHQVANALCAAAVGLECG 338

Query: 327 IDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--- 382
                V   L     V   R +          I   Y    +S+   L+ +  I  G   
Sbjct: 339 ASVEEVAVALAATGPVSRHRMQVTTRADGVTVIDDTYNANPDSMRAGLQALAWIAHGGTH 398

Query: 383 ----------RIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK 427
                     R   V G     G+    +   +G++A+ L  + + +V     RS +   
Sbjct: 399 DKNQPGSCARRSWAVLGEMAELGEDSITEHDRIGRLAVRLDVSRLVVV--GGGRSINAMH 456

Query: 428 IRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            R  ++ G      +   +   A+      +   DV+++
Sbjct: 457 -RGAVMEGSWGLETVNVADPAAALTLLRAEVRPGDVVLI 494


>gi|163786568|ref|ZP_02181016.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
 gi|159878428|gb|EDP72484.1| cyanophycin synthetase [Flavobacteriales bacterium ALC-1]
          Length = 880

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 122/371 (32%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A +GT+GK++    +  I +  G      G T++   + Q+  L T      A A   L
Sbjct: 488 IATSGTNGKTTTTRLIAHIAKMKGYRV---GYTTSDGVYIQNRLLMTGDCTGPASAEFVL 544

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
               V    +E +  GL +  L   K      TN+  DH+      T +     K  + E
Sbjct: 545 KDPTVNFAVLECARGGLLRAGLGFKKCDVAVVTNVAADHLGLKGIHTIEQLAKVKAVVPE 604

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +LP     +   DD           N     +           +K       +   +++
Sbjct: 605 TVLPDGYAILNADDDLVYDMRRNVDCNVALFSMDENNPRVKALQRKGGITAVYENGWVTI 664

Query: 296 EGKDFDFLFPLPGE----------FQVYNALVAAGLCIAIGIDSALVLEHLEKLH----V 341
              ++                   F + N L A       GI    +   LE        
Sbjct: 665 CRGEWKMRIMEAVNIPLTYGGKAKFMIQNVLGAVLAAHVQGISIEDMKAALETFIPSASQ 724

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR            I +DYAH    +  + K    + +   + +    GDR       
Sbjct: 725 TPGRLNL--FEFNDFSILLDYAHNPAGMRALQKFTDELDATVKVGIIAGIGDRRVEDNNE 782

Query: 402 MGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIE 454
           MG IA ++ D  I+  D   R +  E++   +  GI             +  EAI+ A++
Sbjct: 783 MGSIAAEMFDEIIIRQDKRLRGKTEEELIKMLNDGIKMKDPNKKTTIIPSESEAIKHAVK 842

Query: 455 MLNKQDVLVVA 465
              K  ++++ 
Sbjct: 843 NAVKGSLIILC 853


>gi|296134046|ref|YP_003641293.1| FolC bifunctional protein [Thermincola sp. JR]
 gi|296032624|gb|ADG83392.1| FolC bifunctional protein [Thermincola potens JR]
          Length = 430

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRP 400
            P R E +        + +D AH  +  + +   ++   +  ++I+VFG  GD+++ K  
Sbjct: 295 WPARLEIMQRQPM---VIIDGAHNVHGAKSLRNALQEVFSYDKLILVFGMLGDKEREK-- 349

Query: 401 IMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +      LA   ++T  N PR+   +K+  E+   +       +  +A+ TA+++    
Sbjct: 350 -VVAELAPLAAKVVITRPNSPRAGQWDKVAEEVKKYVNDVRVIEDIHQAVDTAVKIAEPG 408

Query: 460 DVLVVAG 466
           D++ + G
Sbjct: 409 DLVCITG 415


>gi|326531704|dbj|BAJ97856.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 503

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 115/281 (40%), Gaps = 16/281 (5%)

Query: 10  DFPELINQLSIFPM---QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
              EL+++  + P+     ++  ++ V SD+  + AG +FV + G    G   + +A  +
Sbjct: 223 TLAELLDESKLVPVAVTGDQDVALSGVQSDATLVAAGDLFVCV-GES--GLAGLTEADKR 279

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTS 124
           GA A+V      ++   A       +++VD+    L +  + LYG+  +++  + +TGT 
Sbjct: 280 GAVAVVADQDVDIEGTLACRA----LVIVDDITAALRVLPACLYGRPSKDMAVIGITGTD 335

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISS---FAQDNRLTTPSPIYLAKALSYLSSQG 181
           G ++ +  V+ + +  G+ +  +G     +            +   + + K ++ +   G
Sbjct: 336 GVTTASHLVKAMYEAMGVRTGMVGVLGAYAFGTNKLDAQPAASGDSMAVQKLMATMLHNG 395

Query: 182 VTHVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              V +E ++  +    +D  I       TN+   +++   T + Y ++   LF  ++  
Sbjct: 396 AEAVVLEKTTDEMLPSGVDSEIDYDIAVLTNVRHGNLEASMTYEGYMSSMASLFSRMVDP 455

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           E    +   D  S          G  V++  ++ K      
Sbjct: 456 ERHRKVVNIDDPSAPFFAAQGGHGVPVVTYSFENKKADAHS 496


>gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 833

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 129/364 (35%), Gaps = 26/364 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               +  ++S   +      I+ + +DSR +      +F A+   + DG  +IP   ++G
Sbjct: 4   TIETIAERISARRVGDTPATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYSRG 63

Query: 68  AEAIVVSSAYSLQDFSATIR------SNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
               VVS        S  +            LVV N  K L   A +   +    ++ +T
Sbjct: 64  VRNFVVSKEAYKWVESGQLAMSNSDMLAVNFLVVANPLKALQKLAEQHREQFQIPVIGIT 123

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK+ V  ++ Q+     +           S  + ++++  P  ++     S L+   
Sbjct: 124 GSNGKTIVKEWLHQLLSPERVIV--------RSPRSYNSQIGVPLSVWQMNEQSELAIFE 175

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                   S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+      
Sbjct: 176 A-----GISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFK----NC 226

Query: 242 SPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              I   DD +    V K   +A     S     + + + KV    +   ++      D 
Sbjct: 227 DVVIYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVISYRYLEMDN 286

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F+ P   +  + N+L     C+ + + +  + E +  L  V  R E     +    I  
Sbjct: 287 TFILPFIDDASIENSLNCLAACLYLMLPAEKITERMATLEPVAMRLEVKEGKNGCLLIND 346

Query: 361 DYAH 364
            Y  
Sbjct: 347 SYNS 350


>gi|85703613|ref|ZP_01034717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
 gi|85672541|gb|EAQ27398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
          Length = 476

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 89/462 (19%), Positives = 160/462 (34%), Gaps = 45/462 (9%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           + +++ VS D+R +Q G +FVA+   + DGH F+ QA+A+GA A +VS           +
Sbjct: 20  DWQVSGVSIDTRTLQRGDLFVALRAAR-DGHEFVAQALAKGAAAALVS------HVPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V++ +  L         +    ++AVTG+ GK+S    ++ + +  G +   
Sbjct: 73  GGDAPLLIVEDVQAGLEALGRAGRARSRAKVVAVTGSVGKTSTKEMLRDVLRHQGRTHAA 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +               P+ LA             + +  +  G         +   
Sbjct: 133 EASYNNHWGV----------PLTLA---RMPVDTQFAVIEIGMNHPGEIAPLARMARPHV 179

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   H++  +  +     K  +FE  L     A+I AD A +  +   A     R
Sbjct: 180 AVITTVAAAHLEAFEDIEGIAREKASIFEG-LEPGGVAVINADIATAPILRAEAVRHAAR 238

Query: 267 VLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +LS G  +G    L  V                   +   +PG     NAL    +   +
Sbjct: 239 ILSFGTARGAHHRLLNVELHDRVTVGHARAWRSPLVYKVGVPGRHFAMNALAVLAVVQVL 298

Query: 326 GIDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           G D A+ +  L       GR           +       +D A  +N   M         
Sbjct: 299 GCDRAVAMADLAGWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAALEVLAA 358

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALD-------LADIAIVTDDN------PRSEDPEK 427
           +     V      R       M ++  D       LAD+  +   +      PR     +
Sbjct: 359 AQPRDGVGRVARGRRIAILGDMLELGADEVAMHAGLADLPYMAQIDEIHCVGPRMRALWE 418

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           + +E   G        +       A  +++  DV++V G KG
Sbjct: 419 VLSEGRQG-RWAATAEDLA---AQAHRLIDAGDVVLVKGSKG 456


>gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
 gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
          Length = 826

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 141/398 (35%), Gaps = 30/398 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +       +E  I+ V +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 4   TIEKVTTLIGARRYGDKEANISFVLTDSRSLCFPEETLFFALKSERNDGHNYIPELYGRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV +     +       ++  L V  + + L   A R   ++   I+ +TG++GK+
Sbjct: 64  VRNFVVETVPEDWNR---RYPDSNFLKVVGSLEALQRLAERHRDEYLVPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+     + +         S  + ++++  P  + L        +  V     
Sbjct: 121 MVKEWLYQLLSPQMVVT--------RSPRSYNSQIGVPLSVLL-----LNENTQVGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+   G FT LG  H +   +  A    K+ LF          +  
Sbjct: 168 GISQPGEMSALHDIIQPTIGVFTCLGSAHQENFPSLDAKCREKLHLF----HDTQAIVYS 223

Query: 248 ADDAYSKEVMKRAHNAGCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFP 305
            DD      +      G +   S   +    ++K +     +  VT + +  K+  +  P
Sbjct: 224 LDDEVLNRCLDEYDYKGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLP 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH- 364
              +  V N++  A   + +G+  A + E +  L  V  R E          I   Y   
Sbjct: 284 FIDDASVVNSITCAVTALQLGVTPAALGERMALLEPVAMRLEVKEGQHGCTLINDSYNSD 343

Query: 365 -TSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQG 397
             S  + +   N R    GR   +        GD D+ 
Sbjct: 344 FNSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDKD 381


>gi|192292418|ref|YP_001993023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286167|gb|ACF02548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris TIE-1]
          Length = 479

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 148/454 (32%), Gaps = 41/454 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV  A       A   
Sbjct: 26  RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALNAGAALAVVEKA-----QRAKFA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            + P+LVVD+  + L         + P  ++AVTG+ GK+S    ++ +    G +   +
Sbjct: 81  PDAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTSTKEGLRGVLGAQGATHASV 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ LA+              +  +  G  +  +  ++    
Sbjct: 141 ASFNNHWGV----------PLSLARC---PVDSRFAVFEIGMNHAGEIEPLVKMVRPHIA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--KRAHNAGC 265
             T +   H+++    +   +A        L     A++  D      +       N G 
Sbjct: 188 IITTVEAVHLEFFSGIEGIADA-KSEIFTGLEPGGIAVLNRDTPMFDRLCSNALRANVGR 246

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V           L  V    +   V  S+ G D  +   +PG     N+L         
Sbjct: 247 IVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLAAAELA 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILKNIRTIT-- 380
           G D AL    L ++    GR          G    +D  Y     S+   L  +      
Sbjct: 307 GADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLGRAEIS 366

Query: 381 -SGRIIVVFGCG---GDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             GR I V G     G R       + +    +  D+        R+        + +  
Sbjct: 367 GQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRN------LWDALSS 420

Query: 436 IPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
                  G+   A+    +  +   DV++V  KG
Sbjct: 421 GKRGGYAGD-AAALESQVVAAIRAGDVVMV--KG 451


>gi|20094189|ref|NP_614036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
 gi|19887208|gb|AAM01966.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
          Length = 480

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 153/441 (34%), Gaps = 49/441 (11%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVT 121
           A  +G   +V       +          P+++ + +     +L  +R         + VT
Sbjct: 54  ASERGVACLVTEHPRG-KLIERCDELGIPLILTEVDRANEYALRVAREKCAPDATAICVT 112

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+    +  I   +G  ++        ++  +  + T   P+   +         
Sbjct: 113 GTNGKSTTNHLLHHILDTAGFDAY-------CNTDFRSEKNTLIDPVVAMELREERPEDY 165

Query: 182 VTHVSVEASSHGLDQHRLD---------GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           +     E    GL   R+           +K      TN+G DH +   + +   +A   
Sbjct: 166 LCVEVSEV--QGLPTGRIMEDHAYRMAKALKCELAVVTNVGVDHTNLVSSLEEMVDAV-Y 222

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L K   A++  DD Y + + +            GY         +     ++ + 
Sbjct: 223 GVVRALRKGGIAVLNRDDRYVRRMTREGVETVWYGWDEGYSH-------IEERDGEEWIV 275

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E       FPLP +  +YNAL A     A+GID   + E L     +  RFE +   
Sbjct: 276 LDEEPLIPVREFPLPVDHFLYNALAAVAAAGALGIDREDIAEGLRTYQPLKRRFERL--- 332

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD- 411
                IY D+ H  + +   ++ +R +   ++IVVF   G R       + +   + A  
Sbjct: 333 CDDPLIYDDFCHNPDGVLATVRALRRLGRSKVIVVFAIRGSRGVDINRQIARALAEGAKD 392

Query: 412 --------IAIVTD-----DNP---RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                     I T      D+    R E+      E+      +       +A+  A+++
Sbjct: 393 LQDEGIHVHVIATSSEGLVDDANVVRPEERRAFLEELERSGIDYEHYDRLEDALERALDL 452

Query: 456 LNKQDVLVVAG-KGHETVHIV 475
            +   V+++ G +G E    V
Sbjct: 453 ADDDTVILLGGAQGMEPAREV 473


>gi|161526009|ref|YP_001581021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349274|ref|YP_001944902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
 gi|160343438|gb|ABX16524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189333296|dbj|BAG42366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
          Length = 468

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 72/433 (16%), Positives = 139/433 (32%), Gaps = 29/433 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                         VS+DSR + AG +FVA+ G + D H F+          +    A +
Sbjct: 15  GATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAA 66

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P++V   TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 67  ALVAQAPAGIALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++     +++           P+ L +  +      +  + +  +  G  +  
Sbjct: 127 AAVGAHARLATAGNLNNDV-------GLPLTLLRLAAAHR---LAVIELGMNHRGETEIL 176

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
                       N  R+H ++  T +A   A                ++  D     + +
Sbjct: 177 ARLTAPTVALVNNAQREHQEFMATVEAV--ALEHAAVIHALPPDGVAVFPADDAYASIWR 234

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A      +    +  +     +V    +  ++ I              GE    NAL A
Sbjct: 235 VAATGNRILDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRIYVD-YAHTSNSLEMILK 374
               +A G+  + + + LE    V GR +    ++    G  +  D Y    +S+   + 
Sbjct: 295 TAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAE 431
            +    + R++V+   G  GD        +G  A     D      D  R  D      E
Sbjct: 355 VLAAQPAPRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASR--DACAAYGE 412

Query: 432 IIHGIPGFIEKGN 444
                       +
Sbjct: 413 AARHFDDVGTLVD 425


>gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 822

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 142/403 (35%), Gaps = 27/403 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               + + +          ++  + +DSR +      +F A+   + DGH +IP+   +G
Sbjct: 4   TLERIASLVGAHLWGSETVEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIPELYRRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
             + VVS          T   +   L V +  K L   A R        ++ +TG++GK+
Sbjct: 64  VRSFVVSRLPE----DMTSCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNGKT 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+       +         S  + ++++  P  +      +      V     
Sbjct: 120 VVKEWLYQLLSPEKNVT--------RSPRSYNSQIGVPLSV-----WNLDERSEVGLFEA 166

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G  +     I+   G FT LG  H +   + +     K++LF+         +  
Sbjct: 167 GISEPGEMEALQSVIQPTIGVFTCLGDAHQENFTSYEQKCLEKLKLFK----DAKVLVYD 222

Query: 248 ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            DDA     + R+   G     S   +   +++  V     +  V+   +GK+     P 
Sbjct: 223 MDDARVVGCVNRSAFKGEYFAWSRQRRDVPLYIASVEKREAETVVSYIYKGKEAACSIPF 282

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA--H 364
             E  + N++    +C+ +G+    +   +  L  V  R E     S    I   Y   +
Sbjct: 283 IDEASLANSVSCLAVCLHLGMSPETIAARMAVLEPVAMRLEVKEGRSGCTLINDSYNSDY 342

Query: 365 TSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIA 406
            S  + +   N R   +GR   ++             + G++A
Sbjct: 343 NSLDIALDFMNRRPDCAGRKRTLILSDIEQAGGAPEDLYGRVA 385


>gi|221213281|ref|ZP_03586256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
 gi|221166733|gb|EED99204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
          Length = 468

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 138/433 (31%), Gaps = 29/433 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                         VS+DSR + AG +FVA+ G + D H F+          +    A +
Sbjct: 15  GATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAA 66

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P++V   TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 67  ALVAQAPAGVALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++     +++           P+ L +  +      +  + +          R
Sbjct: 127 AAVGADARLATAGNLNNDV-------GLPLTLLRLTAAHRLAVIE-LGMNHPGETEILAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L           N  R+H ++  T +A   A                ++  D     + +
Sbjct: 179 LTA--PTVALVNNAQREHQEFMATVEAV--ALEHAAVIHALPPDGVAVFPADDAYASIWR 234

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A      +    +  +     +V    +  ++ I              GE    NAL A
Sbjct: 235 VAATGNRILDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILK 374
               +A G+  + + + LE    V GR +    ++    G  +  D Y    +S+   + 
Sbjct: 295 TAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAE 431
            +    + R++V+   G  GD        +G  A     D      D  R  D      E
Sbjct: 355 VLAAQPAPRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASR--DACAAYGE 412

Query: 432 IIHGIPGFIEKGN 444
                       +
Sbjct: 413 AARHFDDVGTLVD 425


>gi|160896913|ref|YP_001562495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
 gi|160362497|gb|ABX34110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
          Length = 471

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 92/487 (18%), Positives = 174/487 (35%), Gaps = 53/487 (10%)

Query: 1   MKLQ---DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           M LQ   +LI    P+         +   +  +  V +D+R +QAG +FVA+ G + D +
Sbjct: 2   MTLQQALELIQSHIPQA------RLVGNGQAVLTRVHTDTRTLQAGDLFVALKGERFDAN 55

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F+             + A +         +    + V ++   L   A+    +    +
Sbjct: 56  QFL--------AQAREAGAAAALAHGGLEAAGLAGIEVPDSLAALGALATAWRARFALPL 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++V   V  I +         G  +  +    +N +  P  +     +   
Sbjct: 108 IAVTGSNGKTTVTQMVASILRAH------AGEAALATRGNFNNSIGLPLSL-----MRMT 156

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +   V  + +  +  G         +       N  R+H ++  T +A            
Sbjct: 157 AQHRVAVLEMGMNHPGEIAELAAIGQPTVALVNNAQREHQEFMHTVEAVARENG-SVLLS 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LP +  A+  A D Y+    + A    C +      G  +H +    + +  Q T+    
Sbjct: 216 LPADGVAVFPAGDTYTPLWRELAAARQCLLFGESADGAQVHARDALWLGDAWQFTLVTPE 275

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +      + G   V NAL AA    A G+  A +   L     V GR   +G + +G  
Sbjct: 276 GEAPVRLHIAGRHNVRNALAAAACAQAAGVPLADIARGLSVFEPVQGRSRALGVSVQGRT 335

Query: 358 IYV---DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADI 412
           + V    Y    +S+   ++ +R + + +++V+   G  GD+        G +A  L   
Sbjct: 336 VTVIDDSYNANPDSVAAAIEVLRELPAPQLLVLGDMGEVGDQGPQFHAEAGALARSLGIA 395

Query: 413 AIVT-------------DDNPRSEDPEKIRAEIIHGIPGF---IEKGNRI---EAIRTAI 453
            + T                   ED   ++      +P     + KG+R    E +  A+
Sbjct: 396 RLFTLGAQSTSAATAFGAGARHFEDMASLQQAACAALPEVGSILVKGSRFMKMEQVVQAV 455

Query: 454 EMLNKQD 460
           E   K D
Sbjct: 456 EAAGKDD 462


>gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
 gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
          Length = 821

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 125/359 (34%), Gaps = 22/359 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                 +   L       R  +I+ + +DSR +      +F A+   + DGH ++P+   
Sbjct: 2   SSSIENIEKVLGAKRFGDRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    VV               +   L + N  K L   A +   +    ++ +TG++G
Sbjct: 62  RGVRNFVV----GELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+     + +         S  + ++++  P  ++L    + L+       
Sbjct: 118 KTIVKEWLYQLLSPDRVVT--------RSPRSYNSQIGVPLSVWLMNERTELAIFEA--- 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     IK   G  TN+G  H +   + Q     K+ LF+     +    
Sbjct: 167 --GISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFK---DCDVIIY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    +     S     + + ++ +    +   +     G   +F  P
Sbjct: 222 DGDNELISSCVAKSLFTSREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L    + + + +    + E + +L  +  R E     +    I   Y  
Sbjct: 282 FIDDASIENSLHCLAVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNS 340


>gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 821

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 125/359 (34%), Gaps = 22/359 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                 +   L       R  +I+ + +DSR +      +F A+   + DGH ++ +   
Sbjct: 2   SSSIENIEKVLGAKRFGNRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G  + VV               +   L + N  K L   A +   +    ++ +TG++G
Sbjct: 62  RGVRSFVV----GELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+     + +         S  + ++++  P  ++L    + L+       
Sbjct: 118 KTIVKEWLYQLLSPDRVVT--------RSPRSYNSQIGVPLSVWLMNEHTELAIFEA--- 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     IK   G  TN+G  H +   + Q     K+ LF+     +    
Sbjct: 167 --GISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFK---DCDVIVY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    +     S     + + ++ +    +   +     G   +F  P
Sbjct: 222 DGDNELISSCVAKSLFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L    + + + +    + E + +L  +  R E     +    I   Y  
Sbjct: 282 FIDDASIENSLHCLAVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNS 340


>gi|313886033|ref|ZP_07819771.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924563|gb|EFR35334.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 461

 Score = 88.0 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 126/362 (34%), Gaps = 35/362 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R  G     ++A+TG++GK++  +++      +GL     G   T           
Sbjct: 96  EFAYRYAGD--SVMIAITGSNGKTTTTNWLYHTLHNAGLDVSMAGNVGTS---------- 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  +E SS  LD   +   +       N+  DH+D +  Q
Sbjct: 144 ---------LARQVALAPHAYYVIELSSFQLD--HMYQFRAHIAILLNITPDHLDRYDHQ 192

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +        I + +D +++ ++K       R +    +          
Sbjct: 193 MELYARAKMRITQNQEPTDYFISWIEDDWTQRLLKEPGMGAGRRIFFSTKASSDDAVVAS 252

Query: 284 AIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           + + +    +     +  +    L G+  V NAL       A+G+   ++   LE    V
Sbjct: 253 SHNGQLCFALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETFTNV 312

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E++ +      I    A   NS    L+++R     +  ++   G D+      +M
Sbjct: 313 PHRLEYIASIDGVDYINDSKATNINSTWYALESMR-----KPTILILGGTDKGNDYNDLM 367

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  +  +T D+       K+       IP   E  +  +AI  A +M    D +
Sbjct: 368 DLVKEKVVGLIYLTTDS------AKLHRSFDSVIPRHEEVTSMRDAIAAARQMATAGDTV 421

Query: 463 VV 464
           ++
Sbjct: 422 LL 423


>gi|300871879|ref|YP_003786752.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
 gi|300689580|gb|ADK32251.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
          Length = 448

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 72/468 (15%), Positives = 154/468 (32%), Gaps = 49/468 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIP 61
           L+D+I          +  +  + +  +I   S+DSR       +F+AI G+K +G+ F  
Sbjct: 6   LKDIIKIANETNSKCIFNYTDENKNLQI---STDSREDFNENKLFLAIKGDKFNGNDFAL 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
               +G    ++S   +       +  +  ++  +++  F    A     +    ++++T
Sbjct: 63  DTYNKGCRFFILSENIN-------MPKDANVVYTNDSVLFFIKLAREYRRRFNIKVVSIT 115

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G+ GK++              +    G  +                  +A   + ++ + 
Sbjct: 116 GSCGKTTTKELTALFLGTKYKTLKTEGNFNN-EIGVPKTIFNLDDSYEMAVIEAGMNHKN 174

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                 EA            I+       N+   HI +  + +    AK  LF       
Sbjct: 175 ELLRISEA------------IEADTVIINNVEPVHIAFLGSLENIALAKSELF------- 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                  ++A    ++ +  N    +LS     K  ++ +      K+    S   K+  
Sbjct: 216 -------NNAKENAIINKNTNKVDILLSEAKNKKIKNIIEADIKEIKKINDNSFVYKNVT 268

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   L G+F + N L+A        ID     + L        R + +  N+        
Sbjct: 269 FNHNLIGDFNLQNILMALKAAELYNIDLEECAKALTNYQNQKNRMQIIKINNCSIINDC- 327

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIAL--DLADIAIVT 416
           Y     +L+ +L  +      R I + G   +   ++      +G         +  I  
Sbjct: 328 YNSNPTALKNMLIYLSKREEKRKIAIIGDMLETETQNSSFHKEIGIFINSLKNINEVITV 387

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            DN +  D E   +++        E  N    I   I+  N++  +++
Sbjct: 388 GDNSQKIDNEVTCSKM--HFKKVEESINT---IIDIIKNSNEETAILI 430


>gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510]
 gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510]
          Length = 821

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 125/359 (34%), Gaps = 22/359 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                 +   L       R  +I+ + +DSR +      +F A+   + DGH ++P+   
Sbjct: 2   SSSIENIEKVLGAKRFGDRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    VV               +   L + N  K L   A +   +    ++ +TG++G
Sbjct: 62  RGVRNFVV----GELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+     + +         S  + ++++  P  ++L    + L+       
Sbjct: 118 KTIVKEWLYQLLSPDRVVT--------RSPRSYNSQIGVPLSVWLMNERTELAIFEA--- 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     IK   G  TN+G  H +   + Q     K+ LF+     +    
Sbjct: 167 --GISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFK---DCDVIIY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    +     S     + + ++ +    +   +     G   +F  P
Sbjct: 222 DGDNELISSCVAKSLFTSREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L    + + + +    + E + +L  +  R E     +    I   Y  
Sbjct: 282 FIDDASIENSLHCLAVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNS 340


>gi|254446835|ref|ZP_05060310.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
 gi|198256260|gb|EDY80569.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
          Length = 435

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 127/436 (29%), Gaps = 41/436 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +++DSR I++G +F A+     DGH F+  A   GA   +V       +         P
Sbjct: 2   GLTNDSRKIESGELFAALKTAARDGHDFLESARRSGAAGAIVDRFQEEIE--------LP 53

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            LVVD   + L   A         N++ +TG+ GK +    V         +    G  +
Sbjct: 54  QLVVDEVGEALLALAGGYRATWQANVVGITGSCGK-TTCKEVLACLLSGFATLSTRGNLN 112

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
            +            +    A   +              S  G  +     I    G  T 
Sbjct: 113 NLIGVPMSMLRPEGASCEFAVLEA------------GISEPGEMERLAAAINPEWGIVTA 160

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           LG  H++   T +     K +LF+    +   A         +  +         ++   
Sbjct: 161 LGPAHLEDLGTVENVAREKGKLFQGSRLRRVFAG-----ESCEPYLSDMAAPRVLLVKQD 215

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    +  +   +  +   + G    F +   G     N  +A     ++G++   
Sbjct: 216 PYLSVEWAFRFSSEAGRTCLEQRIGGSVQRFEYEGLGAGLASNVALALATAFSMGLEVDQ 275

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE---MILKNIRTITSGRIIVV 387
           +   L        R E       G  +++D Y     S+        +       R+ V+
Sbjct: 276 LRSALGSWKPSQMRNE--WKEIGGRLVFLDCYNANPISMRDSLATFVSNTPEGEPRMYVI 333

Query: 388 --FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEK 442
                 G         +G+   L   D  +V      SE    +R     G  +    E 
Sbjct: 334 GCMEELGSEASRLHEELGREFPLRNQDFLLVI----GSEAASVLRGMKDSGHEMDRCFEI 389

Query: 443 GNRIEAIRTAIEMLNK 458
               EA     +    
Sbjct: 390 ETIEEASERLKDFAGS 405


>gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588]
          Length = 834

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 133/374 (35%), Gaps = 26/374 (6%)

Query: 23  MQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
            Q    +I  +  DSR +      +F+ +V ++ + H +I +   +G    +VS      
Sbjct: 17  QQTGNPEIEHILLDSRKLSFPETSLFIPLVSSRRNAHQYIQELYEKGVSNFIVSEPVPEG 76

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
            +         I++V +T + L    +    +    ++ +TG++GK+ V  ++ Q+ ++ 
Sbjct: 77  KYPKAN-----IILVKDTMQALHALVAYHRQQFHIPVIGITGSNGKTIVKEWLYQLLEKD 131

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                     ++            P                +       S  G  +H   
Sbjct: 132 YNIVRSPKSYNSQIGVPLSVWQMKPE-------------HQLAIFEAGISQPGEMEHLEK 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE----LLPKESPAIIYADDAYSKEV 256
            I+   G FTN+G  H +     +   N K+ LF +    +  K+  A+      +   V
Sbjct: 179 IIRPNIGIFTNIGEAHNEGFLNIRQKINEKLVLFSKSDLLIYSKDYLALNECVLNFHNLV 238

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY--N 314
            K+ ++ G   L    +     L+ +    ++    I    +       +P   +    N
Sbjct: 239 GKKDNHEGGLQLFTWSRKTEADLRIISVDKSEHHSRIDALYQTIPIHINIPFVDEGSVEN 298

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+    L + +G++ +++ + +++L  +  R E     +    I   Y     SL + L+
Sbjct: 299 AIHCWALMLHLGMEHSVIQQRMDQLGNIAMRLELKQGINNCSVINDSYNSDLGSLAIALE 358

Query: 375 NIRTITSGRIIVVF 388
            ++         V 
Sbjct: 359 FLQQQQQHPTRTVI 372


>gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
 gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
          Length = 842

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 130/373 (34%), Gaps = 35/373 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               +  ++    +      I+ + +DSR +      +F A+   + DG  +IP   ++G
Sbjct: 4   TIETIAERIGARRVGDTPATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIPDLYSRG 63

Query: 68  AEAIVVSSA---------------YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
               VVS                     D  +++      LVV N  K L   A +   +
Sbjct: 64  VRNFVVSKETYKAIENGQLIIDDSIQRDDAQSSLIPQLNFLVVANPLKALQKLAEQHREQ 123

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++ +TG++GK+ V  ++ Q+     +           S  + ++++  P  ++   
Sbjct: 124 FQIPVIGITGSNGKTIVKEWLHQLLSPERVIV--------RSPRSYNSQIGVPLSVWQMN 175

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S L+           S  G  +   + IK   G  TN+G  H +   + Q     K+ 
Sbjct: 176 EQSELAIFEA-----GISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLT 230

Query: 233 LFEELLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           LF+         I   DD +    V K   +A     S     + + + KV    +   +
Sbjct: 231 LFK----NCDVVIYNGDDEFISNCVAKSMLSAREIAWSRKDMERPLFISKVEKKEDCTVI 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +      D  F+ P   +  + N+L     C+ + + +  + E +  L  V  R E    
Sbjct: 287 SYRYLEMDNTFMLPFIDDASIENSLNCLAACLYLMLPAEKITERMTTLEPVAMRLEVKEG 346

Query: 352 NSRGGRIYVDYAH 364
            +    I   Y  
Sbjct: 347 KNGCLLINDSYNS 359


>gi|150004319|ref|YP_001299063.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides vulgatus ATCC 8482]
 gi|149932743|gb|ABR39441.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides vulgatus ATCC 8482]
          Length = 821

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 125/359 (34%), Gaps = 22/359 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                 +   L       R  +I+ + +DSR +      +F A+   + DGH ++P+   
Sbjct: 2   SSSIENIEKVLGAKRFGDRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    VV               +   L + N  K L   A +   +    ++ +TG++G
Sbjct: 62  RGVRNFVV----GELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+     + +         S  + ++++  P  ++L    + L+       
Sbjct: 118 KTIVKEWLYQLLSPDRVVT--------RSPRSYNSQIGVPLSVWLMNERTELAIFEA--- 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     IK   G  TN+G  H +   + Q     K+ LF+     +    
Sbjct: 167 --GISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFK---DCDVIIY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    +     S     + + ++ +    +   +     G   +F  P
Sbjct: 222 DGDNELISSCVAKSLFTSREIAWSKKDNERPLFIESIQKGAHATTIKYRYLGMPNEFSIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L    + + + +    + E + +L  +  R E     +    I   Y  
Sbjct: 282 FIDDASIENSLHCLAVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNS 340


>gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 450

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 83/472 (17%), Positives = 150/472 (31%), Gaps = 45/472 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+   +           +      D R  + G +FVA  G++ DGH F  QA 
Sbjct: 4   MIPLSLGEIAVVVDGTVEGDGAVMVTAPAVLDGRQAEPGGLFVAFAGDRVDGHDFAEQAG 63

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTG 122
             GA A++ S   SL             +VV + +  +   A+ + G+  +   +  +TG
Sbjct: 64  EAGAVAVLGSRPTSLST-----------VVVKDVQAAVQALAAYVVGRLRDGLTVAGLTG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +          +  +  T+   +           P+ + +A +       
Sbjct: 113 SQGKTSTKDLL----------ATVVSSTAPTIAAVDSFNNEIGVPVTMLRADAASR---F 159

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + + A   G        +        N+G+ H+ Y  ++QA   AK  L    L    
Sbjct: 160 LVLEMGARRVGDIADLTGLVAPDVAVVLNVGQSHLSYFGSRQAIAKAKGEL-VRGLAPGG 218

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++ ADD     +    +                 +       ++   T+         
Sbjct: 219 TAVLNADDPVVVAMRSLTNGPVL-TFGYAEHADVRVVDLTLDRLSRPSFTLRTADGSAFV 277

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G  Q +NA  A    +A G+   +    L    +   R E    +S    +   +
Sbjct: 278 ELPLVGAHQAHNASAAVAAGLAAGVPLDVAASALATASLSKWRMELRELDSGATLLNDSF 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLADIAIVTDD 418
               +S    L  +  I  GR I V G       D +   R      A     +      
Sbjct: 338 NSNPDSTRAALDALAGIEGGRRIAVLGEMLELGDDHESEHRAAGEYAAARADVVV----- 392

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
                    I + +  G     +   +   AI      +   DV++V A +G
Sbjct: 393 -----AVGGIASLVADGAGDSAVALPDNDAAIDWLRGHITAGDVVLVKASRG 439


>gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           8C-3]
          Length = 216

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 17/209 (8%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           F AI G++ DGH +   A+A GA  +VVS A       A  R   P++VVD+    L   
Sbjct: 3   FFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLTVPMIVVDDVLAALGRL 58

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                 +    I+AVTG+ GK++    ++ +   SG     +   +              
Sbjct: 59  GQASRERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVASFNNHWGV--------- 109

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
            P+ LA+              V  +  G  +  +  I+      T +   H+   ++ + 
Sbjct: 110 -PLTLARMPDD---TDYGVFEVGMNHPGEIRPLVTMIRPDVAVITTIAPAHLGNFKSIKE 165

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSK 254
              AK  +FE L P     +   +D ++ 
Sbjct: 166 IAAAKAEIFEGLEPGGHVVLNRDNDQFNF 194


>gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli GR56]
          Length = 247

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           G  F AI G++ DGH +   A+A GA  +VVS A       A  R   P++VV++    L
Sbjct: 39  GEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA----RLPAMGRLTVPMIVVEDVLAAL 94

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                    +    I+AVTG+ GK++    ++Q+   SG     +   +   
Sbjct: 95  GKLGLASRERSKARIIAVTGSVGKTTTKEMLRQVLSPSGKVHASVASFNNHW 146


>gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
 gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
          Length = 465

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 159/451 (35%), Gaps = 39/451 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           IN +S DSR I  G  + AI G+  DGH F+  A+  GA   VV +A   Q       ++
Sbjct: 17  INGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAVVEAAQRDQ-----FAAD 71

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L+VD+    L   A     +    ++AVTG+ GK+S    ++ +    G +   +  
Sbjct: 72  APLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSVVDAQGKTHASVAS 131

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  +  G     +  ++      
Sbjct: 132 FNNHWGV----------PLSLARCPADAR---FAVFEIGMNHAGEITPLVKMVRPHVAVI 178

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+++    +A  +AK  +FE + P  +  +   +  +++   +       R++S
Sbjct: 179 TTVEPVHLEFFAGIEAIADAKAEIFEGVEPNGAVVLNRDNAQFARLHGRAKKLGIARIVS 238

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +     L  V        V   + G +  +   +PG     N+L         G D
Sbjct: 239 FGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSLAVLASSSLAGAD 298

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITS---G 382
            AL    L +     GR         GG   +    Y     S+   L  +        G
Sbjct: 299 LALAGLALSQAQPAAGRGVRRALAVPGGEAILIDESYNANPASMAAALGVLGGAGIGKLG 358

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           R I V G     G +       + +     A D+        R+     +   +  G  G
Sbjct: 359 RRIAVLGDMLELGPKSADLHRGLAEAINANAVDMIFCCGPLMRN-----LWNALSSGKRG 413

Query: 439 FIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
              + +   A+ + +       DV++V  KG
Sbjct: 414 GYAEDSV--ALESQVTAAIRSGDVIMV--KG 440


>gi|169344117|ref|ZP_02865100.1| Mur ligase family protein [Clostridium perfringens C str. JGS1495]
 gi|169297728|gb|EDS79827.1| Mur ligase family protein [Clostridium perfringens C str. JGS1495]
          Length = 553

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 119/366 (32%), Gaps = 24/366 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK+S +  + +  +  G  S        I +     +           A   L
Sbjct: 159 VSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKK---GDTTGFYSAKKVL 215

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF---------N 228
           ++  V    +E +  G+ +  L          T+L  DHI     +              
Sbjct: 216 TNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 275

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +   + ++  E           +  +     N          +  +    +     + 
Sbjct: 276 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNKYIEKHMKNDKEAWFVEDENVIFFDG 335

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRF 346
           +   I    KDF F      +  + N LV+      +  +   V++ L+ +         
Sbjct: 336 KDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 395

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     +I +DY H     E +      I   +II +    GDR       +GKIA
Sbjct: 396 RQNIIELENFKIILDYGHNPEVFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGKIA 455

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLN 457
              +D  I+  T D  R  +  +I   I  GI          +   +  EAI+ AI M  
Sbjct: 456 GKNSDTIIIKETFDR-RGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIKKAISMAK 514

Query: 458 KQDVLV 463
           + D++V
Sbjct: 515 EGDIIV 520


>gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
 gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
          Length = 896

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 71/402 (17%), Positives = 142/402 (35%), Gaps = 26/402 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQG 67
               +   +       R+  I  + +DSR +      +F A+  ++ DG  FI     +G
Sbjct: 76  TIERVATLIGAHRYGNRDANIGFLLTDSRSLCFAEETLFFALKTDRNDGQHFIGDLYRRG 135

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV     L D   T+  +   L V N    L   A R   +    ++ +TG++GK+
Sbjct: 136 VFNFVVEH---LPDNYDTLYPDVNFLKVVNPLGALQRLAERHRDEFDIPVVGITGSNGKT 192

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+     + +         S  + ++++  P  ++L           +     
Sbjct: 193 MVKEWLYQLLSPQMVVT--------RSPRSYNSQIGVPLSVWLM-----NELTQIGVFEA 239

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G        I+   G  T +G  H +   + +   + K++LF          I  
Sbjct: 240 GISMPGEMASLRSIIQPTIGVLTGIGTAHQENFASMEEKCSEKLKLF----HDSEAVIYN 295

Query: 248 ADDAYSKEVMKRAHNAGCRV-LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           ADD      M+++   G R+  S   +   + +K +    N   VT    GK+  +  P 
Sbjct: 296 ADDDLIARCMEQSGYKGRRMGWSQKDRNAPLFVKTIEKKENTTTVTYVYNGKEGQYSIPF 355

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                V N++    + + +G+ +  +   +++L  V  R E          I   Y    
Sbjct: 356 IDSASVVNSITCMAVSLYLGLSADDLDRRMQRLEPVAMRLEVKTGQHGCTLINDSYNSDV 415

Query: 367 NSLEMILKNIR---TITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            SL++ L  +         R  ++        +  R +  ++
Sbjct: 416 KSLDIALDFMNRRPDHKGRRHTLILSDIYQSGESPRELYREV 457


>gi|325676973|ref|ZP_08156645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552273|gb|EGD21963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
          Length = 506

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 148/502 (29%), Gaps = 70/502 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRER--KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     ++   +        +    ++  V  DSR I +G +F+A+ G + DGH     
Sbjct: 1   MIPMTLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITSGGLFLALPGARVDGHDHAAG 60

Query: 63  AIAQ-----------GAEAIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFA 106
           A+A            G  AIVV    +  + +  +  +       +         L   A
Sbjct: 61  AVAAGAVAVLAARPVGVPAIVVEPLGASGNGALALEHD------RDGSGAAVLAALGKLA 114

Query: 107 SRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                +        ++ VTG+SGK+S    +  +    G      G  +           
Sbjct: 115 RASVDRLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALR 174

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                 +L              + + A   G      +      G   N+G  H+    +
Sbjct: 175 ADADTRFL-------------VLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGS 221

Query: 223 QQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           ++A      ++            A++ ADD     +  R       V   G         
Sbjct: 222 REAIAETKGELPASLPSAADGGVAVLNADDPLVAAMADRTEARVVMVGLSGNADVRATDV 281

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH-LEKL 339
           ++         T++           + GE  V NAL AA + +  G     +        
Sbjct: 282 RLDDQARA-SFTLTCAAGAVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGGAA 340

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI------TSGRIIVVFGCG-- 391
            V   R E    +     +   Y    +S+   +K + ++       + R   V G    
Sbjct: 341 PVSARRMEVRDRSDGVTVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAE 400

Query: 392 -GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGI-------PGFIEK 442
            G     +   +G+ A+ L     I+         P +    +  G           I  
Sbjct: 401 LGPESVVEHDAIGRFAVRLDVTKLILVG-------PGRPVRAMYQGAVMEGSWGDEAIHV 453

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +   AI    + L   D+++V
Sbjct: 454 PDGASAIALLEQELRAGDLVLV 475


>gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 467

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 85/418 (20%), Positives = 150/418 (35%), Gaps = 33/418 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
            F EL     + P    ++ +  +S D+R +QAG +FVA+  ++ DGH F+  A   GA 
Sbjct: 6   TFSELSAVFGVAPEGGTDQPVTGISIDTRTLQAGDLFVALK-DQRDGHDFVSPAFKAGAA 64

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A +VS  Y           +  +  V +T K L         +      ++AVTG++GK+
Sbjct: 65  AALVSEGY------VRRAEDGALFRVSDTLKALEALGRAARDRLSPDARVIAVTGSAGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
                ++      G++       +               P+ LA+              +
Sbjct: 119 GTKEMLRACLSHLGVTHASEKSYNNHWGV----------PLTLARMPRETR---FGVFEI 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +  G  +     ++  A   T +   H+++  + +A  +AK  +FE  L     AII 
Sbjct: 166 GMNHAGEIRPLTKMVRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEG-LLPGGTAIIK 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            D+ ++  +   A   G + ++ G+  G  +    +   H+   +++ +  +       +
Sbjct: 225 FDNPHAARLKAIAERLGAKAVTFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAM 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYA 363
           PG     NAL  A    AIG D    L  L  L    GR         GG   +    Y 
Sbjct: 285 PGRHIAENALAVAAAIDAIGADIETALSVLAGLQPPGGRGARSVLRLDGGEALLIDESYN 344

Query: 364 HTSNSLEMILKNIRTITSGRI---IVVFGCG---GDRDQGKRPIMGKIALDLADIAIV 415
               S+   L  + ++   R    I V G     G    G    +     D     I 
Sbjct: 345 ANPASMRAALATLASLPRQRFPRRIAVLGDMLELGADAPGLHAGLKDAVEDAGIDVIF 402


>gi|258649253|ref|ZP_05736722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850436|gb|EEX70305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
          Length = 430

 Score = 87.6 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 127/387 (32%), Gaps = 28/387 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           +++D+R    G IF A+ G   +G+ F  QA+  G                 ++  +  +
Sbjct: 16  ITTDTRDCPPGSIFFALRGETFNGNRFAHQALDNGCALA--------VVDDPSVVDDDRL 67

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           ++VD+    L   A+    +    ++ +TGT+GK++    V  +        F  G    
Sbjct: 68  ILVDDVLTTLQALAAFHRHQFTGPVIQITGTNGKTTTKELVSAVLSERYNVLFTQGN--- 124

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                 +N +  P  +     L   +S  +  +   A+  G  +   + +    G  TN+
Sbjct: 125 -----FNNHIGVPKTL-----LRLNASHQIAVIETGANHPGEIKLLSEIVDPDCGLITNV 174

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G+ H+    + +     K  L++ L  K    +    D    + +               
Sbjct: 175 GKAHLAGFGSFEGVIRTKGELYDYLRTKSDAFVFINADNPYLQPIAHDLLRITYGRPGKD 234

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                 +       N +        ++      L G + + N L A  + +  G+    +
Sbjct: 235 YDVEGEVLTCDPCLNLRFRIKGGAWQEV--KTQLIGAYNIDNILAAVAVGVRFGVTPEQI 292

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              +        R E + T      I   Y     S+   L N + I     + + G   
Sbjct: 293 SRAIAAYCPTNNRSELLRTA-TNTLIVDAYNANPTSMAAALDNFQLIKHPHKMAILGGMR 351

Query: 393 D----RDQGKRPIMGKIALDLADIAIV 415
           +      Q  + I+ K+A    D   +
Sbjct: 352 ELGNASAQEHQAIIDKVATMALDDIWL 378


>gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
 gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
          Length = 487

 Score = 87.6 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 86/456 (18%), Positives = 152/456 (33%), Gaps = 40/456 (8%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R +   S D+R ++ G +F AI G   DGH F+  A+ +GA A VV+ A + +       
Sbjct: 25  RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVRAALDKGAGAAVVAEARAKEFEGVGSV 84

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P    D     +         +    I+AVTG+ GK+     ++ +    G +   +
Sbjct: 85  LAVPGEGDDPVLDAMRRLGLAARARTEAAIVAVTGSVGKTGTKEALRHVLSAQGATHASV 144

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ L        +       +  +           ++    
Sbjct: 145 ASYNNHWGV----------PLTL---TRMPEATRFGVFEIGMNHGAEILPLTAMVRPDVA 191

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NAGC 265
             T +   HI++ ++  A  +AK  +F   L     A+I  D+   + ++  A    AG 
Sbjct: 192 LITTVEPVHIEHFRSLSAIADAKGEIFSG-LKPGGVAVINRDNPNYERLLAHAQASRAGR 250

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +    +    +   ++    +   V  +V G    +    PG     N+L       A+
Sbjct: 251 VITFGEHAAADVRAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVAMNSLGVLACIHAL 310

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILKNIRTIT-- 380
           G D A     L  L    GR E        G    VD  Y     S+   L  +  I   
Sbjct: 311 GADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASIRAALATLAGIDTG 370

Query: 381 -SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
             GR I V G   +     +   R +   +A +  D+               + A +   
Sbjct: 371 VKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVF---------AVGPLMAHLFEA 421

Query: 436 IPGFI--EKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           +P  +        E +  A+   L   D ++V  KG
Sbjct: 422 LPMTVRGTAAPTAEGVTDAVLATLRPGDAVMV--KG 455


>gi|237785339|ref|YP_002906044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758251|gb|ACR17501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 505

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 73/504 (14%), Positives = 130/504 (25%), Gaps = 72/504 (14%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           +L D+       +            +  +   V  DSR I  G +F+A+ G + +GH F 
Sbjct: 8   RLADITGGYLVNI----------DPDAVVPGPVEFDSRKIAPGSVFLALPGARVNGHDFA 57

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL------------------ 102
            QAI  GA   ++S    +         +     V+     L                  
Sbjct: 58  AQAIKDGATLALLSRDMGVPAVIIPHVEH-----VETNATALEYDRDGEGEAALAALSKL 112

Query: 103 -SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
                + L   H   ++ VTG++GK+S    +  I +  G +    G  +          
Sbjct: 113 AHHTVTELVAHHGLRVIGVTGSAGKTSTKDMIATILRTQGETVAPPGSFNNEIGHPYTAL 172

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
             T              S       + A   G   H         G+  N+G  H+    
Sbjct: 173 RCT-------------ESTRFLVAEMSARGIGHIAHLARIAPPTIGAVLNVGTAHLGEFG 219

Query: 222 TQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           +++A   A  ++            AI+ ADD     +  R             +      
Sbjct: 220 SREAIAQAKGELVEALPSADDGGVAILNADDRLVSGMAPRTSARVITFSVKSGEAGDDPA 279

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFP-----------LPGEFQVYNALVAAGLCIAIGID 328
               A+     V  S     F    P                       AA         
Sbjct: 280 DDHDAVIATDVVLDSSARASFTLTMPTGESAPVQLQVYGQHQVANALAAAAVGFAVGMSV 339

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---- 384
             +             R +          I   Y    +S+   +  + +    R     
Sbjct: 340 DEIATALSHHTAASANRMDVRNRRDGVTIINDSYNANPDSMRAGIAALASTVQAREDAQS 399

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FI 440
             V G  G+           I  +L    I   ++         +  + HG         
Sbjct: 400 WAVLGQMGELGASATDEHYSIGEELGRHQI---NHVVVVGNGVNQRALAHGAKDSGVDVT 456

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVV 464
              +   A+      +   DV+++
Sbjct: 457 HVDDVDAAVDNVWSSVRPDDVVLI 480


>gi|326388914|ref|ZP_08210496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206514|gb|EGD57349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 510

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 65/388 (16%), Positives = 122/388 (31%), Gaps = 39/388 (10%)

Query: 22  PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
            +   +  ++  + DSR +  G +F+A+ G   DGH F+  A  +GA   +V  A +   
Sbjct: 33  KLGGGDFAVSGCAFDSREVMEGDLFIALKGENADGHRFVDGAFLKGAAGALVEQAVAH-- 90

Query: 82  FSATIRSNTPILVVDNTRKFL--SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
                    P ++V +T   L     A+R        ++ VTG++GK+ V   +     R
Sbjct: 91  ---------PHVLVADTMAGLEALARAARARLDPAARVIGVTGSAGKTGVKEALFAALDR 141

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                             +        P+ LA+  +               +H  +   L
Sbjct: 142 --------SSRGRAHRSVKSYNNHVGVPLSLARMPARTRFGVFEMGM----NHAGELSAL 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +     +           H + +A          E L     AI+ AD  +   ++  
Sbjct: 190 TRLVRPHVAIVTTIAPAHIGHFSGEAAIAEAKAEIFEGLEPGGVAIVPADSPHCALLVAH 249

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-------KDFDFLFPLPGEFQV 312
           A      V++ G                     ++ E        +   +    PG    
Sbjct: 250 AQRHAGLVITFGTAEHADVRLVDALPTVTGGTLVTAEFSARTGAARKLCYTVAQPGAHWA 309

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-----GTNSRGGRIYVD--YAHT 365
            N+L       A+G D       L ++  +PGR         G +  G  + +D  Y   
Sbjct: 310 ANSLAVMAAVAAVGGDLGAAGLALAEMAGLPGRGARHAIAASGGDGSGKALLIDESYNAN 369

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGD 393
             S+   +  +    + R + V G   +
Sbjct: 370 PASMSATIAALGATPARRRVAVLGAMRE 397


>gi|241765146|ref|ZP_04763134.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
 gi|241365225|gb|EER60072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
          Length = 475

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 135/373 (36%), Gaps = 26/373 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  V +D+R +QAG +FVA+ G + D + F+  A A GA A +               
Sbjct: 28  TPVARVHTDTRTLQAGDLFVALKGERFDANAFLADARAGGAVAAIAHGGLEA-------- 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P + V ++   L   A+    +    ++ +TG++GK++V   V  I +     +   
Sbjct: 80  AGLPGIEVPDSLAALGALAAGWRAQFGLPLIGITGSNGKTTVTQMVASILRAWKGEAA-- 137

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              ST  +F  D  +        A   + +   G+ H    A+   + Q  +        
Sbjct: 138 --FSTQGNFNNDIGVPLTLLRLRAAHAAAVIEMGMNHPGEIATLAAIAQPTV-------A 188

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H+++  T +A            LP +  A+  A D YS      A    C  
Sbjct: 189 LVNNAQREHLEFMHTVRAVAEENG-SVLAALPADGVAVFPAGDPYSALWGALAAPRRCVT 247

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G   +               V +            + G+  V NAL AA   +A G 
Sbjct: 248 FGAGGDVRCAQA---SWRQGAWAVEMVTPLGALSCSLQIAGQHNVTNALAAAACALAAGA 304

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384
               +   L     V GR   +G      ++ V    Y    +S+   +  + ++ + ++
Sbjct: 305 PLESIARGLSAFTPVKGRSRAIGLRVADRQVTVVDDSYNANPDSMRAAIDVLASLPAPQL 364

Query: 385 IVVFGCGGDRDQG 397
           +V+   G   DQG
Sbjct: 365 LVMGDMGEVGDQG 377


>gi|313885847|ref|ZP_07819588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924676|gb|EFR35444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 458

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 120/354 (33%), Gaps = 17/354 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIRS 88
           + + +D+RH++   +FV++ G   DG+ F   A+ QG +  +V   S     D S     
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I   D   + L   A     K     +A+TGT+GK++    V  +           G
Sbjct: 78  ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +             P                   V + AS  G         +   G 
Sbjct: 138 NYNNEIGVPLTLLQVRPE-------------HQFVIVELGASHIGDIASLCKLAQPQYGI 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+GR H+    T +    AK  L+  L      A    +D      +           
Sbjct: 185 ITNVGRAHLSGFGTPEGVIKAKSELYAYLREHSGQAFCNGEDKTLISNLNGLPTVYYNGT 244

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +       +      +   K +      G+ +     L G++ + N L A  + +  G+D
Sbjct: 245 TSPRVTGAVLPTD-ESGLLKIEWCDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLD 303

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
              + E +        R + +   ++G R+ +D Y    +S+E+ L +  T+  
Sbjct: 304 PKTINEAVTNYQPHNERSQVLPPTAQGNRVILDCYNANPSSMEVALSSYFTMDC 357


>gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
 gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
          Length = 821

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 124/359 (34%), Gaps = 22/359 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                 +   L       R  +I+ + +DSR +      +F A+   + DGH ++ +   
Sbjct: 2   SSSIENIEKVLGAKRFGNRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    VV               +   L + N  K L   A +   +    ++ +TG++G
Sbjct: 62  RGVRNFVV----GELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+     + +         S  + ++++  P  ++L    + L+       
Sbjct: 118 KTIVKEWLYQLLSPDRVVT--------RSPRSYNSQIGVPLSVWLMNEHTELAIFEA--- 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     IK   G  TN+G  H +   + Q     K+ LF+     +    
Sbjct: 167 --GISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFK---DCDVIVY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    +     S     + + ++ +    +   +     G   +F  P
Sbjct: 222 DGDNELISSCVAKSLFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L    + + + +    + E + +L  +  R E     +    I   Y  
Sbjct: 282 FIDDASIENSLHCLAVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNS 340


>gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
 gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
          Length = 785

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 141/415 (33%), Gaps = 46/415 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+AIVVS+A    +       +   P L   +    L    +   G      +AV G+
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAAL---VNEYDG------IAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +       G S   I     +     + +L T                   
Sbjct: 121 HGKTTTTSMIGVTLDHVGASPTII-VGGEVPDLGTNAKLGT------------------- 160

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 S           ++      TN+  DH+D++ T +    A  R F E +  +  
Sbjct: 161 -SRYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKI-IAAFRQFIEQVDTDGA 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           A++  ++A  + + +                       +    +    T+   G +    
Sbjct: 219 AVLCFENANLRNIARETKRCVVSYAI--DYEADYRASDIETRGSLISFTVHERGAEMGHI 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NAL    +   +G++   +   L + H    RF+  G    G  +  DY
Sbjct: 277 SLNIPGRHNVLNALACIAVARLVGVEFPAIRAALAQFHGAKRRFQTKGKER-GVWVVDDY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH    + + L   R     R+I VF      R Q  R   G+   D AD+ ++TD    
Sbjct: 336 AHHPTEISVTLAAARQTNPERLICVFQPHRYSRTQLLREEFGRCFAD-ADLLLLTDIYAA 394

Query: 422 SEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P      E +  E+        +   +R +  R   + +   D+++  G G+
Sbjct: 395 GEAPIPGISGETVMEEVAKQTGQDAVYLPDRADLERYLAQQVRAGDLVITMGAGN 449


>gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4]
 gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4]
          Length = 821

 Score = 87.3 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 124/359 (34%), Gaps = 22/359 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                 +   L       R  +I+ + +DSR +      +F A+   + DGH ++ +   
Sbjct: 2   SSSIENIEKVLGAKRFGNRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    VV               +   L + N  K L   A +   +    ++ +TG++G
Sbjct: 62  RGVRNFVV----GELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+     + +         S  + ++++  P  ++L    + L+       
Sbjct: 118 KTIVKEWLYQLLSPDRVVT--------RSPRSYNSQIGVPLSVWLMNEHTELAIFEA--- 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     IK   G  TN+G  H +   + Q     K+ LF+     +    
Sbjct: 167 --GISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFK---DCDVIVY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    +     S     + + ++ +    +   +     G   +F  P
Sbjct: 222 DGDNELISSCVAKSLFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L    + + + +    + E + +L  +  R E     +    I   Y  
Sbjct: 282 FIDDASIENSLHCLAVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNS 340


>gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 785

 Score = 87.3 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 144/415 (34%), Gaps = 46/415 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+AIVVS+A    +       +   P L   +    L    +   G      +AV G+
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAAL---VNEYDG------IAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +     R G  S  I     +     + +L T                   
Sbjct: 121 HGKTTTTSMIGVTLDRVG-VSPTIIVGGEVPDLGTNAKLGT------------------- 160

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 S           ++      TN+  DH+D++ T +    A  R F E +  +  
Sbjct: 161 -SRYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKI-IAAFRQFIEQVDTDGT 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  ++   + + +   +                   +    +    ++   G +   +
Sbjct: 219 AVLCFENEILRNIARETAHKVVSYAI--DHEADYRASNIETRGSVISFSVHERGTEMGRV 276

Query: 304 F-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NAL    +    G++   + + L + H    RF+  G    G  +  DY
Sbjct: 277 LLNIPGRHNVLNALACIAVARLAGVEFPAICDALAQFHGAKRRFQTKGKER-GVWVVDDY 335

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH    + + L   R     R+I VF      R Q  R   GK   D AD+ ++TD    
Sbjct: 336 AHHPTEIAVTLAAARQTNPERLICVFQPHRYSRTQLLRAEFGKCFAD-ADLLLITDVYAA 394

Query: 422 SEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P      E +  E++       +   +R +  R   + +   D+++  G G+
Sbjct: 395 GETPIPGISGETVMEEVVRQTGQDVVYLPDRADLERYLAQQVRAGDLVITMGAGN 449


>gi|110800740|ref|YP_697134.1| Mur ligase family protein [Clostridium perfringens ATCC 13124]
 gi|110675387|gb|ABG84374.1| Mur ligase family protein [Clostridium perfringens ATCC 13124]
          Length = 560

 Score = 87.3 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 120/366 (32%), Gaps = 24/366 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK+S +  + +  +  G  S        I +     +           A   L
Sbjct: 166 VSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKK---GDTTGFYSAKKVL 222

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF---------N 228
           ++  V    +E +  G+ +  L          T+L  DHI     +              
Sbjct: 223 TNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +   + ++  E           +  +     N          +  +    +     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 342

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRF 346
           +   I    KDF F      +  + N LV+      +  +   V++ L+ +         
Sbjct: 343 KDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLREVVDSLKNIECDVYNNIG 402

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     +I +DY H   + E +      I   +II +    GDR       +GKIA
Sbjct: 403 RQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGKIA 462

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLN 457
              +D  I+  T D  R  +  +I   I  GI          +   +  EAI+ AI M  
Sbjct: 463 GKNSDTIIIKETFDR-RGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKKAISMAK 521

Query: 458 KQDVLV 463
           + D++V
Sbjct: 522 EGDIIV 527


>gi|18311428|ref|NP_563362.1| hypothetical protein CPE2446 [Clostridium perfringens str. 13]
 gi|18146112|dbj|BAB82152.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 553

 Score = 87.3 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 120/366 (32%), Gaps = 24/366 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK+S +  + +  +  G  S        I +     +           A   L
Sbjct: 159 VSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKK---GDTTGFYSAKKVL 215

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF---------N 228
           ++  V    +E +  G+ +  L          T+L  DHI     +              
Sbjct: 216 TNPQVEVEVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 275

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +   + ++  E           +  +     N          +  +    +     + 
Sbjct: 276 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 335

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRF 346
           +   I    KDF F      +  + N LV+      +  +   V++ L+ +         
Sbjct: 336 KDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 395

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     +I +DY H   + E +      I   +II +    GDR       +G+IA
Sbjct: 396 RQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIA 455

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLN 457
              +D  I+  T D  R  +  +I   I  GI          +   +  EAI+ AI M  
Sbjct: 456 GKNSDTIIIKETFDR-RGREELEITNLIKSGINEIKNKSVEVLSIIDEEEAIKKAISMAK 514

Query: 458 KQDVLV 463
           + D++V
Sbjct: 515 EGDIIV 520


>gi|225549111|ref|ZP_03770086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
 gi|225370337|gb|EEG99775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
          Length = 463

 Score = 87.3 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 141/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLDGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y     S   +   I  +    +  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLILEAISMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|182420535|ref|ZP_02643564.2| Mur ligase family protein [Clostridium perfringens NCTC 8239]
 gi|182380050|gb|EDT77529.1| Mur ligase family protein [Clostridium perfringens NCTC 8239]
          Length = 560

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 121/366 (33%), Gaps = 24/366 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK+S +  + +  +  G  S        I +     +           A   L
Sbjct: 166 VSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKK---GDTTGFYSAKKVL 222

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF---------N 228
           ++  V   ++E +  G+ +  L          T+L  DHI     +              
Sbjct: 223 TNPQVEVGALETARGGILKKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +   + ++  E           +  +     N          +  +    +     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 342

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRF 346
           +   I    KDF F      +  + N LV+      +  +   V++ L+ +         
Sbjct: 343 KDKNIISNIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 402

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     +I +DY H   + E +      I   +II +    GDR       +G+IA
Sbjct: 403 RQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIA 462

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLN 457
              +D  I+  T D  R  +  +I   I  GI          +   +  EAI+ AI M  
Sbjct: 463 GKNSDTIIIKETFDR-RGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKKAISMAK 521

Query: 458 KQDVLV 463
           + D++V
Sbjct: 522 EGDIIV 527


>gi|167946373|ref|ZP_02533447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 145

 Score = 86.9 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 14/134 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           LQDL+     E+           +ER I+ ++ DSR++  G +F+A  G    G  F  Q
Sbjct: 13  LQDLLAG-LAEI--------DAAQERPISCLAIDSRNLCPGGLFLACQGGDRHGLDFTEQ 63

Query: 63  AIAQGAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYGKHPENI-- 117
           A+AQGA AI         +  A     +   P++ V+   +  SL A+R +     ++  
Sbjct: 64  ALAQGAVAIAWEPNGPEVNRQAERLATQLPIPLIRVEGLTRLASLIAARFFAYPSRSMTV 123

Query: 118 LAVTGTSGKSSVAS 131
           + VTGT+GK+SV+ 
Sbjct: 124 IGVTGTNGKTSVSH 137


>gi|239917865|ref|YP_002957423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413641|ref|ZP_06245383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839072|gb|ACS30869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
          Length = 504

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 158/481 (32%), Gaps = 35/481 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ-AGWIFVAIVGNKEDGHLFIPQAI 64
           L      E ++      +      +  V+ DSR +   G ++VA  G + DGH FI  A+
Sbjct: 4   LTAAQIAEAVSGTLSATLDPATVLV-HVTPDSREVTAEGTLYVAKPGERADGHDFIDTAL 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS----RLYGKHPENILAV 120
             GA A++   A    D +A      P ++V++    +   A     R+    P  ++ +
Sbjct: 63  GAGAAAVLAERATHAPDGAAH-----PAIIVEDAVLAMGALAREVVRRVREHSPTTVIGI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           TG++GK++    +  +    G +   +G     +       R    +   + +  +    
Sbjct: 118 TGSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRFLVVEMGADHVG 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +     G+            G   N+ R   +  +       A + L +E + 
Sbjct: 178 NIAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVA 237

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN-KQQVTISVEGK 298
               A   A         +R        ++ G     +  + V +    +    + V   
Sbjct: 238 GM--AARTAAPITWFTADERGVTRAAEDVAAGRASGLVAARDVRSDDQERPVFDLQVGTD 295

Query: 299 DFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNS 353
           +     P+     G   V+N L AA    A G+D A +   L+ L      R E      
Sbjct: 296 EAAVRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLGPASRFRMERTDRAD 355

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIAL 407
               I   Y     S+   L+ + T+      R   V G     GD    +  ++G+  +
Sbjct: 356 GVTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVV 415

Query: 408 DL--ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            L  A + +V         P  I   +  G          +  +A     E L   D+++
Sbjct: 416 RLNIAQLLVVGA----GARPLYI-GALNEGSWGEEAHFVDDAAQAEAFLAEHLRPGDLVL 470

Query: 464 V 464
           V
Sbjct: 471 V 471


>gi|296125247|ref|YP_003632499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
 gi|296017063|gb|ADG70300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
          Length = 451

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 145/469 (30%), Gaps = 49/469 (10%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRH----IQAGWIFVAIVGNKEDGHL 58
           L+++I                   ++++  +S+DSR      +   +F+AI G+K DG+ 
Sbjct: 6   LKNIIKVSKELNSKYSKNIEELDIDKELE-ISTDSRDSFDSTK---LFLAIKGDKFDGNK 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  +   +G    ++S      D +  +  N  +   D+T  F    A     +    I+
Sbjct: 62  FALETYNKGCRYFILS------DQTINMPDNAKVFYTDDTILFFIKLAREYRRRFNIPII 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           +VTG+ GK++              +    G  +           T  +     +     +
Sbjct: 116 SVTGSCGKTTTKELTHLFLSTKYKALKTEGNFN----NEIGVPKTMFNLDTSYEIAVIEA 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                +  +  S           I+       N+   HI +  + +    AK  LF    
Sbjct: 172 GMNHKNELLRISEC---------IEANTVIINNVEPVHIAHLGSIENIAYAKAELFNHTK 222

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                         +  V+ +  N    +     +    ++ +       ++   S E K
Sbjct: 223 ------------ENANAVINKNTNCADILKKEAKRNNIKNIIEADIKEIVKKDDNSFEYK 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              F   L G+F +YN L A        ID     + L        R + +         
Sbjct: 271 GIIFNHNLVGDFNLYNVLSALKAAEIYNIDLKKCADILLNYQSQKNRMQIINIKGCNIIN 330

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD---RDQGKRPIMGKIALDLADIAIV 415
              Y     +L+ +LK +      + I V G   +    +      +G    +L +I  V
Sbjct: 331 DC-YNSNPAALKNMLKYLSQRNESKKIAVIGDMLETETENSSYHKEIGNNINELKNIDTV 389

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 S+D   I          +    N   AI    + L     +++
Sbjct: 390 IAVGEHSKDIYNIVN-----CEKY-YFENAQSAIEKVKDFLKDNTAMLI 432


>gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145]
 gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145]
          Length = 818

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 141/413 (34%), Gaps = 36/413 (8%)

Query: 9   KDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQ 66
           +    LI++ S  P  +  + I+ + +DSR +      +F  + G +++ H +I     +
Sbjct: 9   EQISALISEKSSLP--FPNQVIHRLLTDSRKVTETKNTLFFVLKG-RKNAHHYIKDLYHK 65

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G  + V    Y  Q F  T   +   L   +  + L   A+   GK    ++ +TG++GK
Sbjct: 66  GVRSFV----YYDQGFDITNFPDANFLYSPDPLRALQNLAAVHRGKFSFPVIGITGSNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  ++ Q+                 S  + ++++  P  I         +   +    
Sbjct: 122 TVVKEWLYQLLAYKYTIV--------RSPKSYNSQIGVPLSI-----WKMDTLYNLAIFE 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              S  G  +     IK   G FTN+G  H +    ++     K +LF  +         
Sbjct: 169 AGISQTGEMERLEKIIKPSIGVFTNIGSSHDEGFSDKEEKIAEKFKLFAHVNKLICNKEF 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                 S ++            S+      +++K++        +  + E ++     P 
Sbjct: 229 SEYAPQSVDLY---------TWSLDDNTANLYVKEISVEDTGTSIKSTYEDREISIKIPF 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
             +    NA+    + +  G   + + + + KLH V  R E     +    I   Y    
Sbjct: 280 KDKASTENAITCLLVMLVFGYSESEIEDKMSKLHPVKMRLEMKSGINNTSIIDDSYNSDL 339

Query: 367 NSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIA----LDLADIAI 414
           +SLE+ L  +          ++           + +   +A        D  I
Sbjct: 340 SSLEIALDFLNHQQQHQNKTLILSDIQQSGLDGQQLYQTVARLLESKGVDKVI 392


>gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 489

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 159/452 (35%), Gaps = 40/452 (8%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + V  DSR ++ G +FVA+ G   DGH FI +A A GA A +V               + 
Sbjct: 47  SGVEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFAAGAAAAIVDRPI-----------DW 95

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P ++V++T   L   A+    +     +AVTG+ GK+ V   +     R           
Sbjct: 96  PHVLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGVKEAIFSALDR------ASRGQ 149

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +  S  + +N +  P  +                  +  +  G      D ++      T
Sbjct: 150 AHRSVRSYNNHVGVPLSV-----ARMSPRARYGVFEMGMNHAGEIAPLADHVRPDVAVIT 204

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   HI+   + +A  + K ++F   L     AII AD    + +   A  AG  V S 
Sbjct: 205 TIAPAHIENLGSLEAIADEKAQIFTG-LKPGGAAIIPADSEQFERLKAHAEAAGAEVFSF 263

Query: 271 GYQGKFIHLKKVCAIHNKQQVTI---SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           G                    ++    ++     +    PGE  + N+L       A+G 
Sbjct: 264 GRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLAVMACIYAVGG 323

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRI 384
           D       L ++  + GR       + GGR  +    Y     S+   L  +    + R 
Sbjct: 324 DLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASMRATLTQLGQTPASRR 383

Query: 385 IVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHGIPG 438
           I V G  G+      +    ++  I     D A++  D   P         A  +   P 
Sbjct: 384 IAVLGAMGELGEFSTRFHEALLEPIEEGQVDYAVLVGDAMEPLVRKMGTAHANGLGNPPA 443

Query: 439 FIEKGNRIEAIRTAIEM--LNKQDVLVVAGKG 468
           F       EAI  A+E   LN  D ++V  KG
Sbjct: 444 FAHCAGPAEAI-AALEEFGLNAGDAILV--KG 472


>gi|312148181|gb|ADQ30840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi JD1]
          Length = 463

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 141/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAG----WIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNIDDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLDGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y     S   +   I  +    +  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLILEAISMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 521

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 86/496 (17%), Positives = 147/496 (29%), Gaps = 58/496 (11%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                      ++ ++ DSR ++ G  FVA+ G + DGH F  QA A+GA  ++ +    
Sbjct: 16  GRLAAGDPNAGVSGIAWDSRLVRPGDCFVALAGERADGHDFAAQAAARGAACVLAARPVP 75

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQIC 137
                     +  ++V  +    L      L  +HP   ++ +TG+ GK++       + 
Sbjct: 76  A--------GDAAVVVCPDPLLGLGRLGLALRSRHPHLRVVGITGSVGKTTTKEMTAAVL 127

Query: 138 QRSGLSSFQIGPTS------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                     G  +            T    A    +   +P  +A   S    Q     
Sbjct: 128 AERFRVFRTEGNLNSEVGLPASLAGLTDEHEAAVLEMGMRAPGEIAYLASIARPQVGVVT 187

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +V  +   L   + +     +     L  D +           A        +       
Sbjct: 188 NVGITHLELLGTQENIALAKSELVRALPPDGVAVLNADDPRVRAMAAATPARVWFYGLTA 247

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A D  +   +                G              Q+  +     + D   P
Sbjct: 248 REAADDAAAAPVATGTAGEAGTPGGRVVGWVTAENARPDGPMAQRFRLVCHLGEADVRLP 307

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
            PG   + NAL AA + ++ G+D   V   L        R   V   + G RI  D Y  
Sbjct: 308 APGPHNLLNALAAAAVGLSQGLDLEAVARGLSLFRNAGNRLRLV--EAGGVRILDDTYNA 365

Query: 365 TSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
              S+   L+ +R      GR + V G     G  +      +G +A  L D  +     
Sbjct: 366 APASVIAALEVMRGFAGPEGRCVAVLGDMYELGALEVEGHRQVGMVAARLTDELVAVGQL 425

Query: 420 PRS------------------------EDPEKIRAEIIHG---IPGFIEKGNRIEAIRTA 452
            R                         E P + +  +  G   +       +   AI   
Sbjct: 426 GRHIAEGARAALAGAGGGSAGAGFRGGEGPPEGQGPVAGGGTRLREVHHVPDNAGAIAWL 485

Query: 453 IEMLNKQDVLVVAGKG 468
            E L   D ++V  KG
Sbjct: 486 KERLRPGDTVLV--KG 499


>gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score = 86.9 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 7/140 (5%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        M     ++  VS+D+R I  G +FVA+ G + DGH ++        EA  
Sbjct: 10  ELAAATGGRWMGAPPAELAGVSTDTRTIVPGALFVALRGERFDGHAYLG-------EASA 62

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             +A ++    A   +  P+L V +T   L   A     +    ++ VTG++GK++    
Sbjct: 63  KGAAAAVVAHGAAAGAPLPVLAVPDTLAALGAIARHHRRRFHIPVVGVTGSNGKTTTREM 122

Query: 133 VQQICQRSGLSSFQIGPTST 152
           +  I    G      G  + 
Sbjct: 123 IAGILATRGPVLKTEGNLNN 142


>gi|325067118|ref|ZP_08125791.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces oris K20]
          Length = 483

 Score = 86.9 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 91/489 (18%), Positives = 159/489 (32%), Gaps = 50/489 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           M+L         ++   +    +   +  +   V +DSR    G +FVA+ G + DGH  
Sbjct: 5   MRLS------LSQIAAAVGGRLIG-PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAH 57

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP---ILVVDNTRKFLSLFASRLYGKHPE- 115
           +  A   GA   +VS   + +   +  ++  P   +++V++T   L   A        + 
Sbjct: 58  LGSAGVLGAVGAIVSDLEAARSGLSLDQAEEPTMGLVLVEDTVVALGALARTHLEGLRQA 117

Query: 116 --------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                    ++A+TG+ GK++     +Q+   SG +       +          LT    
Sbjct: 118 AAERGERLTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFN----NEIGLPLTVLEA 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      S     + + AS  G   +  D   L A     +G  H+    + +   
Sbjct: 174 DE---------STRYLVLEMGASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVA 224

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +   L P  +  +   D   +              +             + A   
Sbjct: 225 AAKAEIIAGLRPDGTAILNADDARAAAMAELAPARVLTFSVRGRQADLRAENVDLDAAAR 284

Query: 288 -KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGR 345
               + +    +       + G   V NAL AAGL +A GI   LV E L  +    P R
Sbjct: 285 AAFDLHLPGLAEPSRVQLAVAGVHNVSNALAAAGLALAAGIAPELVAERLGSVSIESPHR 344

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPI 401
            +    +     I   Y    +S+   L  +  +   R  VV        G+        
Sbjct: 345 MDISELSGDLLLIDDSYNANIDSMTAALAVLPALAGDRRRVVVISEMLELGESSAADHAR 404

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG--NRIEAIRTAIEMLNKQ 459
            G++A   A  A++       E  E        G  G    G  +   AI     +L   
Sbjct: 405 TGELAAR-AGAAMLIGIGSTQEALEA------AGARGVEVVGFDDAATAISQIDALLCDG 457

Query: 460 DVLVVAGKG 468
           D ++V  KG
Sbjct: 458 DAVLV--KG 464


>gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
 gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
          Length = 456

 Score = 86.9 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 156/464 (33%), Gaps = 40/464 (8%)

Query: 10  DFPELINQLSIFPMQWRE-RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGA 68
           D   +  +L    +   +  +++ V+ DSR + AG +FVA+ G + DGH +         
Sbjct: 6   DLNAIATRLGAEVLGATDALRVSGVAIDSRTVSAGDLFVALRGERVDGHDY--------- 56

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            A   +           +    P L V  +   LSL A  +  ++   ++ +TG++GK+S
Sbjct: 57  VAAAHAGGAVAAVVEEPVAVEIPQLQVAASVDVLSLIAGMVREQYRGVLVGITGSAGKTS 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + +  +   +G +    G  +               P+ L        +     V + 
Sbjct: 117 AKTLLASVLAEAGPTLATSGNQN----------NEIGVPLTLF---RLDPAIEFAVVEMG 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A   G   H     +    +  N    H+  + +  A            L      +   
Sbjct: 164 AGRPGDIAHLCAVARPGITALLNAAPAHLANYDSVDAIART-KGEILAALGSGDLGVFNG 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D  Y+    + A  A  R   +        +      +      +      FD    LPG
Sbjct: 223 DQRYADVWREMAAPAEVRTFGMSKGVDVRAINIQYEGYKGTHFRVKTPEDGFDVALKLPG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              VYNAL A  +  A+G+  A +   LEK+    GR   +  +S    +   Y     +
Sbjct: 283 SPGVYNALAAIAIAGALGLSPAAIARGLEKVSPERGRGRALRASSGAQIVDDSYNANPVA 342

Query: 369 LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG-KIALDLADIAIVTDDNPRSED 424
           +   +  +  +T GR  ++ G     G +       MG +      D  I   +  R   
Sbjct: 343 VAAAIDTL-AMTPGRRSLILGPMLELGPKTDEFHREMGVRAKEAGLDRLITVGEATRP-- 399

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                AE   G P      +   A+ +A+      D ++V  KG
Sbjct: 400 ----AAEGFGGSPQ--HFAD-NSALLSALPDFTSGDTVLV--KG 434


>gi|219685635|ref|ZP_03540450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
 gi|219672823|gb|EED29847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
          Length = 463

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 146/425 (34%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAG----WIFVAIVGNKEDG 56
           K++D++      + +  +        E+ ++  S DSR I        ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----EKVVSFYSLDSREINDDNINVSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +  + +  +  +             L+  N  K L   AS L  +   
Sbjct: 59  FSFVKYLIDLGVKCFICAREHESECIKYLNDNEGLVFLLTSNVIKLLQALASCLIERTNF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+G  H+   +  Q+    K ++  
Sbjct: 174 VFEVGVSYIGEMDLLSQILK--------PEIVIITNIGYAHMQAFKELQSIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +      +    + Y   + KRA  A   V  V +  + +++K    +  K       
Sbjct: 226 KNI---EIFVANEMNDYCVYLEKRAKIANPNVKIVYFDFESLNIKSFSFLEGKFSYDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLVETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y    +S   +   I  +   G+  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMDSFMALKNMILDLDIQGKKFMVLGSFKELGEFAYKTHKDLIKEAVSMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|219684602|ref|ZP_03539545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
 gi|219671964|gb|EED29018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
          Length = 463

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 146/425 (34%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAG----WIFVAIVGNKEDG 56
           K++D++      + +  +        E+ ++  S DSR I        ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----EKVVSFYSLDSREINDDNINVSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +  + +  +  +             L+  N  K L   AS L  +   
Sbjct: 59  FSFVKYLIDLGVKCFICAREHESECIKYLNDNEGLVFLLTSNVIKLLQALASCLIERTNF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+G  H+   +  Q+    K ++  
Sbjct: 174 VFEVGVSYIGEMDLLSQILK--------PEIVIITNIGYAHMQAFKELQSIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +      +    + Y   + KRA  A   V  V +  + +++K    +  K       
Sbjct: 226 KNI---EIFVANEMNDYCVYLEKRAKIANPNVKIVYFDFESLNIKSFSFLEGKFSYDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y    +S   +   I  +   G+  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMDSFMALKNMILDLDIQGKKFMVLGSFKELGEFSYKTHKDLIKEAVSMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|304318121|ref|YP_003853266.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302779623|gb|ADL70182.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 875

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 136/399 (34%), Gaps = 31/399 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           ++VTGT+GK++    + QI +  G +                 +     P      L+  
Sbjct: 481 ISVTGTNGKTTTVRMISQILKMYGYTVGMTSTDGIYVDDVCIYKGDNSGPKSARTCLADK 540

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +        +E +  G+ +  L       G  TN+  DH+     +     A ++     
Sbjct: 541 NIDA---AVLETARGGIVREGLGYDLADVGIITNISEDHLGIDGIETLEDLAFVKSLVVE 597

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----------HLKKVCAIH 286
             K+    +   D      + +         S+      I           ++K    + 
Sbjct: 598 AVKKDGYSVLNADDPMTPYISKRAKGKIIYFSMHENNITIKRHLEEGGISVYVKNDTIVI 657

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    +  +          + V NA+ A      I I   ++ + ++  +      
Sbjct: 658 ANGEIVPVAKIDEIPATLNGKVLYNVENAMAAIAASYGIKIPVNVISKGIKSFYCDENHN 717

Query: 347 --EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
              F   N    R+ VDY H  +S+  ++++ R +   R++ V G  GDR       +G+
Sbjct: 718 PGRFNIFNVGSFRVLVDYGHNIDSIRKVIESARKLNPNRLLGVIGVPGDRSDSSTLKIGE 777

Query: 405 IALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEML 456
           I  +  D   + +D + R   P +I   +  G+                ++A++TA+   
Sbjct: 778 ICGEGFDKVYIKEDLDLRGRKPGEIAKLLEIGVLKGGLSKEDVNVILKEVDALKTAMYEA 837

Query: 457 NKQDVLVVAGKGHETV----HIVTNGEKKMSVDCDIIRE 491
              D++V+    +E       ++ N  K    D D  +E
Sbjct: 838 QPGDLIVIF---YEKYAPVVDVINNFIKISQFDIDESKE 873


>gi|170764283|ref|ZP_02640360.2| Mur ligase family protein [Clostridium perfringens CPE str. F4969]
 gi|170713818|gb|EDT26000.1| Mur ligase family protein [Clostridium perfringens CPE str. F4969]
          Length = 560

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 121/366 (33%), Gaps = 24/366 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK+S +  + +  +  G  S        I +     +           A   L
Sbjct: 166 VSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKK---GDTTGFYSAKKVL 222

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF---------N 228
           ++  V    +E +  G+ +  L          T+L  DHI     +              
Sbjct: 223 TNPQVEVGVLETARGGILKKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +   + ++  E           +  +     N          +  +    +     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 342

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRF 346
           +   I    KDF F      +  + N LV+      +  +   V++ L+ +         
Sbjct: 343 KDKNIISNIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 402

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     +I +DY H   + E +      I   +II +    GDR       +G+IA
Sbjct: 403 RQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIA 462

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLN 457
            + +D  I+  T D  R  +  +I   I  GI          +   +  EAI+ AI M  
Sbjct: 463 GENSDTIIIKETFDR-RGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIKKAISMAK 521

Query: 458 KQDVLV 463
           + D++V
Sbjct: 522 EGDIIV 527


>gi|325519769|gb|EGC99074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 131

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                         VS+DSR +  G +FVA+ G + D H F+          +    A +
Sbjct: 15  GATVHGDAGVTFERVSTDSRTVGPGDLFVALKGERFDAHDFLGD--------VAARGAAA 66

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P++V   TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 67  ALVAHAPAGLAMPLIVGGETRAALGALAHGWRKRFALPLVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSG 141
            +G
Sbjct: 127 AAG 129


>gi|195941342|ref|ZP_03086724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi 80a]
          Length = 463

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 144/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLEGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNI--RTITSGRIIVV--FGCGGDRD-QGKRPIMGKIALDLA 410
             +   Y     S   +   I    I S + IV+  F   G+   +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLDIQSKKFIVLGSFKELGELAYKTHKDLILEAISMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|216264224|ref|ZP_03436216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215980697|gb|EEC21504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 463

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 141/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLDGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y     S   +   I  +    +  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|15594649|ref|NP_212438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
 gi|3915785|sp|Q44777|MURF_BORBU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2688162|gb|AAC66644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
          Length = 464

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 141/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLDGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y     S   +   I  +    +  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|86740117|ref|YP_480517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
 gi|86566979|gb|ABD10788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
          Length = 467

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 132/466 (28%), Gaps = 35/466 (7%)

Query: 6   LIYKDFPELINQLSIFPMQWRE--RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+ +          +    +  V  DSR ++ G +FVA+ G++ DGH F    
Sbjct: 1   MIPLTLAEVASATGGRLDAVPDPGVTVRSVVVDSREVRDGALFVALAGSRVDGHDFAA-- 58

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
                     + A       A      P ++V +    L+  A+ +       ++AVTG+
Sbjct: 59  ---------AAVAAGASAVLAARSVGEPAVIVPDPPSALAALAAYVRDLAAATVVAVTGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++    +  +      +    G  +           T P                  
Sbjct: 110 AGKTTTKDLLADVLGGLAPTVAAPGSFNNEIGLPLTLLRTEPD-------------TAFV 156

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A   G         +   G   N+G  H+  +   +    A      E   +   
Sbjct: 157 VLEMGARGPGHIATLCAVARPAVGVVLNVGSAHLGEYADGRLGIAAAKGELAEAASEA-- 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++ ADD     +  R           G          V  +       ++        L
Sbjct: 215 VVLNADDPLVAAMAVRTTAEVITFGEGGRADVRAGAVDVDRLGRASFDLLAHGEHHRVTL 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +           AA           +             R E   T +    +   Y 
Sbjct: 275 GLVGAHQVPNALAAAAVAIRLGLSPDRVAAALSAARPRSRWRMEVTSTAAGVVVVNDAYN 334

Query: 364 HTSNSLEMILKNIRTIT-SGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDD 418
               S+   LK +  +   GR   V G     GD    +  ++G+ A+ L  D  I    
Sbjct: 335 ANPESMRAALKALVDMRGKGRAFAVLGPMGELGDAAAAEHDVLGRFAVRLGVDRLIAVGP 394

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             R             G    +E  +  EA+          DV++V
Sbjct: 395 AARHIHLGASLEGSWDG--ESVEVTDAEEAVALVAAQAGPDDVVLV 438


>gi|221217708|ref|ZP_03589176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223889004|ref|ZP_03623595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224533118|ref|ZP_03673718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224533787|ref|ZP_03674375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225550109|ref|ZP_03771069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|221192385|gb|EEE18604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223885820|gb|EEF56919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224511845|gb|EEF82246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224513080|gb|EEF83443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225369221|gb|EEG98674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|312149582|gb|ADQ29653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi N40]
          Length = 463

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 141/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLEGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y     S   +   I  +    +  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|332300681|ref|YP_004442602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177744|gb|AEE13434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 458

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 120/354 (33%), Gaps = 17/354 (4%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS--SAYSLQDFSATIRS 88
           + + +D+RH++   +FV++ G   DG+ F   A+ QG +  +V   S     D S     
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              I   D   + L   A     K     +A+TGT+GK++    V  +           G
Sbjct: 78  ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +             P                   V + AS  G         +   G 
Sbjct: 138 NYNNEIGVPLTLLQVRPE-------------HQFVIVELGASHIGDIASLCKLAQPQYGI 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+GR H+    T +    AK  L+  L      A    +D      +           
Sbjct: 185 ITNVGRAHLSGFGTPEGVIKAKSELYAYLREHSGQAFCNGEDKTLISNLNGLPTVYYNGT 244

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +       +      +   K +      G+ +     L G++ + N L A  + +  G+D
Sbjct: 245 TSPRVTGAVLPTD-ESGLLKIEWCDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLD 303

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
              + E +        R + +   ++G R+ +D Y    +S+E+ L +  T+  
Sbjct: 304 PKTINEAVTNYQPRNERSQVLPPTAQGNRVILDCYNANPSSMEVALSSYFTMDC 357


>gi|170763998|ref|ZP_02636857.2| Mur ligase family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170710779|gb|EDT22961.1| Mur ligase family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 560

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 121/366 (33%), Gaps = 24/366 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK+S +  + +  +  G  S        I +     +           A   L
Sbjct: 166 VSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKK---GDTTGFYSAKKVL 222

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF---------N 228
           ++  V    +E +  G+ +  L          T+L  DHI     +              
Sbjct: 223 TNPQVEIGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +   + ++  E           +  +     N          +  +    K     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDKNVIFFDG 342

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRF 346
           +   I    KDF F      +  + N LV+      +  +   V++ L+ +         
Sbjct: 343 KDKNIISNIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 402

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     +I +DY H   + E +      I   +II +    GDR       +G+IA
Sbjct: 403 RQNIIELENFKIILDYGHNPEAFEELFYLANKIKRNKIISIVSSPGDRLDEYIKELGRIA 462

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLN 457
            + +D  I+  T D  R  +  +I   I  GI          +   +  EAI+ AI M  
Sbjct: 463 GENSDTIIIKETFDR-RGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIKKAISMAK 521

Query: 458 KQDVLV 463
           + D++V
Sbjct: 522 EGDIIV 527


>gi|325282928|ref|YP_004255469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
 gi|324314737|gb|ADY25852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
          Length = 438

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 77/442 (17%), Positives = 158/442 (35%), Gaps = 66/442 (14%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR   A   FVA+ G ++ G+ FI  A+ +GA  ++     +      T+      
Sbjct: 24  LTWDSRQADADTAFVALPGERDHGNRFIEAALERGAPFVLTDLPGAASRLPRTVE----- 78

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             V ++   L+ +A +   K+P  ++ VTG+ GK++  S+V        +  +       
Sbjct: 79  --VPDSLAALTAWAQQERAKNPL-VVGVTGSVGKTTTKSYVAAALDAHYMPVYN--TIPA 133

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTN 211
           I+ F  +   +                +    V +     G +  RL  + +   G  T+
Sbjct: 134 IACFLTEFGSS----------------ERPLVVEMGIDRVG-EMDRLISLVRPDVGVLTS 176

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +     K ++            +  + A      +  +      L V 
Sbjct: 177 IGAAHLEGLSSLEVIAQEKGKILHSPR------ALVGNQARVWFPEQEIYGFSTPELPVQ 230

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           + G+ + + +  A    +  T+           P   + Q   A++   L    G+  A 
Sbjct: 231 HSGQDLRVNEQGADFTYRGQTVH---------LPNAAQVQAEAAVLGLYLAETYGVPLAA 281

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGC 390
            ++ +E++ V  GR++       G    +D A+ ++ L      +      GR I V G 
Sbjct: 282 AIQRVEQVQVPSGRYQI----HSGRYTVIDDAYNASPLAVQAALSALQNFRGRRISVLGT 337

Query: 391 G---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               G         +G+ A + AD+       P +E         + G            
Sbjct: 338 MLELGPTAPELHAEVGRSACESADLCF--GVGPYAE---------LLGHHAHRTVPELTA 386

Query: 448 AIRTAIEMLNKQDVLVV-AGKG 468
           A++     +   DV++V A +G
Sbjct: 387 ALK---AEVQDGDVILVKASRG 405


>gi|218249487|ref|YP_002374827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|218164675|gb|ACK74736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
          Length = 463

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 144/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLDGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNI--RTITSGRIIVV--FGCGGDRD-QGKRPIMGKIALDLA 410
             +   Y     S   +   I    I + + IV+  F   G+   +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFMALKNMILDLNIQNKKFIVLGAFKELGELAYKTHKDLIQEAISMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|182626009|ref|ZP_02953772.1| Mur ligase family protein [Clostridium perfringens D str. JGS1721]
 gi|177908716|gb|EDT71227.1| Mur ligase family protein [Clostridium perfringens D str. JGS1721]
          Length = 560

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 121/366 (33%), Gaps = 24/366 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK+S +  + +  +  G  S        I +     +           A   L
Sbjct: 166 VSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKK---GDTTGFYSAKKVL 222

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF---------N 228
           ++  V    +E +  G+ +  L          T+L  DHI     +              
Sbjct: 223 TNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +   + ++  E           +  +     N          +  +    +     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 342

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRF 346
           +   I    KDF F      +  + N LV+      +  +   V++ L+ +         
Sbjct: 343 KDKNIISNIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 402

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     +I +DY H   + E +      I   +II +    GDR       +G+IA
Sbjct: 403 RQNIIELENFKIILDYGHNPEAFEELFYLANNIKRNKIISIVSSPGDRLDEYIKELGRIA 462

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLN 457
            + +D  I+  T D  R  +  +I   I  GI          +   +  EAI+ AI M  
Sbjct: 463 GENSDTIIIKETFDR-RGREKLEITNLIKSGIKEVENKSVEVLSIIDEEEAIKKAISMAE 521

Query: 458 KQDVLV 463
           + D++V
Sbjct: 522 EGDIIV 527


>gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK678]
          Length = 456

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 153/484 (31%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI              +  +    S    +    ++VD+        A     K   ++L
Sbjct: 54  FIAT----------AFAQGAAATLSERPVAEGAYILVDDVLTAFQRLAQYYLQKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRTEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+  A + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYTALQEGVSEAAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
 gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
          Length = 824

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 155/414 (37%), Gaps = 31/414 (7%)

Query: 26  RERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            ++ I+ + +DSR +      +F A+   + DGH ++     +G    VVS   +L D  
Sbjct: 21  SDKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYRRGVRDFVVS---ALPDDY 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
           A+        VV +  K L   A     +    ++ +TG++GK+ V  ++ Q+     + 
Sbjct: 78  ASRFPAATFYVVADPLKALQHLAECHRRRFDIPVVGITGSNGKTIVKEWLYQLLSPQLVV 137

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +         S  + ++++  P  + L       +   +       S  G        I+
Sbjct: 138 T--------RSPRSYNSQVGVPLSVCL-----LNAQTQLGIFEAGISQPGEMSALRPIIQ 184

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G  TN G+ H +   + +     K+ LF+         I  ADD    E +++A  A
Sbjct: 185 PRIGVMTNTGQAHQENFTSLEEKCAEKLSLFK----DADVLIYDADDPVVAEGVRQASFA 240

Query: 264 GCR-VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           G +   S       + ++KV     +  +T +   ++ DF  P   E  V NA+    +C
Sbjct: 241 GDQLAWSRTKDEGPLVIRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIHCLAVC 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH--TSNSLEMILKNIRTIT 380
           + + +D+A++ + + +L  V  R E          I   Y     S  + +     R   
Sbjct: 301 LYLHVDAAVIAQRMARLEPVAMRLEVKQGVRGCILINDSYNSDVNSLDIALDFMQRRPDR 360

Query: 381 SG-RIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAI-VTDDNPRSEDPEKI 428
            G R  ++          +  +  ++A        D  I V  D    +D  KI
Sbjct: 361 VGMRKTLILSDISQSGMPREQLYAQVAEMVNRRRVDRLIGVGPDLSAMQDLFKI 414


>gi|226226830|ref|YP_002760936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090021|dbj|BAH38466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 474

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 144/446 (32%), Gaps = 43/446 (9%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            +S+D+R I  G +FVA+ G++ D H F+  A   GA A VVS      D +  +    P
Sbjct: 47  GISTDTRRIARGDVFVALRGDRFDAHDFLATAKDAGAAAFVVS------DATRAVGLGVP 100

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
             VV +T   L   A         +++AV G++GK+S    ++     +       G  +
Sbjct: 101 TYVVPDTLIALGQLAHTWRTVWGRHVIAVAGSNGKTSTKELLKAALSGTFEVHATTGNLN 160

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ L    +      +  V +  ++ G                T+
Sbjct: 161 ----------NLIGVPLTLL---AIPPHADIAVVELGTNAPGEVATLRAMSAPDVAVLTS 207

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G +H++           +  +F  +     P         + E  +    AG     V 
Sbjct: 208 IGEEHLEGLGDLAGVLREECDVFPGVRLAIIPVAHPEVSPMASERAEAVVTAGLTDADVA 267

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                             +     +     F  PL G  Q  NA++A     A G+    
Sbjct: 268 P----------EQWGLDDEGRPWFDVDGVHFTLPLRGAHQAANAMLAVAAARACGVPLES 317

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF--- 388
               +  + V   R     T  +   I   Y     S+   L  +  +  GR  V F   
Sbjct: 318 AAAGMAAMPVPNMR-GVWETIGQTTVINDAYNANPPSMRAALALLDRVGEGRQRVAFLGT 376

Query: 389 -GCGGDRDQGKRPIMGKIALDLADIAIVTD----DNPRSEDPEKIRAEIIHGIPGFIEKG 443
               G +   +   + + AL  +   IV      D  R   P+ I A         I   
Sbjct: 377 MRELGAQADVQHDDIARAALVSSADVIVGVGAFGDAFRRVAPDAINAA----SGRVIVAD 432

Query: 444 NRIEAIRTAIEMLNKQDVLVV-AGKG 468
               A   A   +N+  V+++ A +G
Sbjct: 433 EPESAWTAAAPRVNRNAVILLKASRG 458


>gi|171057209|ref|YP_001789558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
 gi|170774654|gb|ACB32793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
          Length = 489

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 137/387 (35%), Gaps = 26/387 (6%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           + I  V SD+R ++AG +FVA+ G + D H F+PQA          + A +         
Sbjct: 29  QPIARVHSDTRSLRAGDLFVALRGERFDAHDFLPQAQ--------AAGAVAAIAERGLDA 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           S  P + V ++   L   A+    +H   ++AVTG++GK++V   +  I +     +   
Sbjct: 81  SGMPGIEVPDSLLALQALAAGWRAEHLLPVIAVTGSNGKTTVTQMIAAILRAWLGDAAHA 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +  +       L     + L         +   +   E +           +     
Sbjct: 141 TAGNFNNHIGVPLTL-----LALHAGHRAAVVELGMNHPGEIAELARIAQPTVAL----- 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N  R+H ++ QT +A       +    LP +  A+  ADD Y+    + A       
Sbjct: 191 -VNNAQREHQEFMQTVEAVARENGCVISA-LPADGVAVFPADDDYTPIWRELAQPRRVLT 248

Query: 268 LSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            ++   G         +   +  Q          D    + G   V NAL A    +A G
Sbjct: 249 FALAEAGVAADCVAQASWAGDHWQARFDTPAGSIDLALGVAGRHNVKNALAACACALAAG 308

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGR 383
                V   L     V GR +    +  G +   +   Y    +S+   ++ +  + + R
Sbjct: 309 CPLDAVQRGLAGFAAVKGRSQVSLLDWGGRQVTLVDDSYNANPDSVRAAIEVLAALPAPR 368

Query: 384 IIVV--FGCGGDRDQGKRPIMGKIALD 408
            +++   G  GD+       +G +A  
Sbjct: 369 WLLLGDMGEVGDQGPAFHAEVGTLAAQ 395


>gi|168206840|ref|ZP_02632845.1| Mur ligase family protein [Clostridium perfringens E str. JGS1987]
 gi|170661728|gb|EDT14411.1| Mur ligase family protein [Clostridium perfringens E str. JGS1987]
          Length = 553

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 118/366 (32%), Gaps = 24/366 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK+S +  + +  +     S        I +     +           A   L
Sbjct: 159 VSITGTNGKTSTSRLIYKGFENLEYFSGLAMTGGIIINNEFVKK---GDTTGFYSAKKVL 215

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF---------N 228
           ++  V    +E +  G+ +  L          T+L  DHI     +              
Sbjct: 216 TNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 275

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +   + ++  E           +  +     N          +  +    +     + 
Sbjct: 276 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 335

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--VPGRF 346
           +   I    KDF F      +  + N LV+      +  +   V+  L+ +         
Sbjct: 336 KDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVNSLKNIECDVYNNIG 395

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                     +I +DY H   + E +      I   +II +    GDR       +G+IA
Sbjct: 396 RQNIIELENFKIILDYGHNPEAFEELFYLANKIKRNKIISIVSSPGDRLDEYIKELGRIA 455

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNRIEAIRTAIEMLN 457
              +D  I+  T D  R  +  +I   I  GI          +   +  EAI+ AI M  
Sbjct: 456 GKNSDTIIIKETFDR-RGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIKKAISMAK 514

Query: 458 KQDVLV 463
           + D++V
Sbjct: 515 EGDIIV 520


>gi|229184422|ref|ZP_04311629.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228599218|gb|EEK56831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
          Length = 124

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M L+ L      E+IN        +   +I+ V  DS++I+ G +FV I+  K DGH ++
Sbjct: 10  MNLKKL-----EEVING-GGLHESFHHLEIHGVRIDSKNIKEGNVFVPIIRVK-DGHEYV 62

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +++  GA A +   +Y             PI+ VD+T   L   A     +    ++ +
Sbjct: 63  KESMDNGAVASLWKKSYGTP------PKGVPIIFVDDTLFALQQLAQFYRREINVKVIGI 116

Query: 121 TGTSGK 126
           TG+  K
Sbjct: 117 TGSMAK 122


>gi|224531597|ref|ZP_03672229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511062|gb|EEF81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 463

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 142/426 (33%), Gaps = 37/426 (8%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAG----WIFVAIVGNKED 55
           K++D++      + ++   F    +  +  ++  S DSR I+       ++ A  GNK D
Sbjct: 4   KIKDIL------ISSKDVKFVGNIKNIEKIVSFYSLDSREIKNDNINVSLYFAYKGNKVD 57

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           G  F+   I  G +  V S  +  +             L+  N  K L   AS L  +  
Sbjct: 58  GFSFVKYLIDLGVKCFVCSRDHESECIEYLNDNEELVFLLTSNVIKLLQTLASCLIERTS 117

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+TG++GK++    +  I  +   +    G  ++               +   +  
Sbjct: 118 FKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEY 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +           ++  S  L               TN+   H+   +  Q     K ++ 
Sbjct: 173 AVFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQVIAFEKSKII 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +      ++   + Y   + K+A      V  V +  + +++K    +  K      
Sbjct: 225 GRNI---EIFVLNEMNDYCVYLEKKAKIENPNVKIVYFDFENLNIKSFSFLEGKIFYDFI 281

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              K F++   L G   ++NA+    L + +G+    + E L +     GR E    N  
Sbjct: 282 --YKGFEYSILLLGRHNIFNAIGCINLALFLGMGEKEIREGLIETAFQKGRAEIFTQNGY 339

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRD-QGKRPIMGKIALDL 409
              +   Y     S   +   I  +       +    F   G+ + +  + ++ +     
Sbjct: 340 -LILNDSYNGNMGSFMALKDIILDLNIQNKKFIILGSFKELGEFEYKTHKDLIQEAISMN 398

Query: 410 ADIAIV 415
            D   +
Sbjct: 399 FDKIFL 404


>gi|183602420|ref|ZP_02963786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683265|ref|YP_002469648.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191226|ref|YP_002968620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196632|ref|YP_002970187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218339|gb|EDT88984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620915|gb|ACL29072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249618|gb|ACS46558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251186|gb|ACS48125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177342|gb|ADC84588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794219|gb|ADG33754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 496

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 83/472 (17%), Positives = 144/472 (30%), Gaps = 58/472 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V +DSR +  G +FVAI G   DGH F+  A  QGA A +V                 
Sbjct: 31  TSVVTDSRQVVDGALFVAIAGEHVDGHDFVDAAARQGAAAALVEREIKSAP--------I 82

Query: 91  PILVVDNTRKFLSLFASRLYG-----KHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
             +VV +T   L   A            P  I+ +TG+ GK++    +  +    G +  
Sbjct: 83  AQIVVPDTVAALGALAKANLEARKAIDEPFTIIGITGSVGKTTTKDLLHALLSTQGETVA 142

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G          +N +  P       AL            + A+  G            
Sbjct: 143 PKGS--------FNNEIGLP-----LTALKVGERTRYLVAEMGANHIGEIARLTKIAPPD 189

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV----MKRAH 261
                 +G  H+    + +    AK  +     P     +  ADD     +         
Sbjct: 190 IAVVLKVGVAHLGEFGSVERIAQAKSEIVRGEAPNAITVL-NADDERVAAMSGIAKGDVF 248

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             G           ++    +      +     +S +G +      + G   V NAL AA
Sbjct: 249 WFGIDKAQAHDIDGYMAADDIALDDLGHPVFELVSSQGVEQRVSLGIGGRHNVMNALAAA 308

Query: 320 GLCIAIGIDSALVLEHLEKLHVV-PGRF---EFVGTNSRGGRIYVDYAHTSNSLEMIL-- 373
            +   +G+    + + L     + P R    E     +R   I   +    +S+   +  
Sbjct: 309 SVAKLLGMPLERIAQVLADTRRISPHRMAVSEVERDGARFTLIDDSFNANPDSMRAGIDG 368

Query: 374 -KNIRTITSGRI--IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
               R+    +   + V G     G  +      +G  ALD    A++            
Sbjct: 369 LMAWRSQEDQQPYRVAVLGSMLELGSDEHNLHRTIGAYALDGGVDALICVGGGDDASLNA 428

Query: 428 IRAEIIHGIPGFIEKGNRI--EAIR---------TAIEMLNKQDVLVVAGKG 468
           +  +I  G     +  +     A++          A+      D+LV+  KG
Sbjct: 429 LAQDIADGGTEAKDADDMRPVRAVKTTQQADDLIRAL-NAEHPDMLVLL-KG 478


>gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101]
          Length = 456

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           + +DSR +Q G +FV +VG + DGH F+ QA A G +A VV    +       +      
Sbjct: 30  ICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGRA-----GDVPPGLLH 84

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            +VD+T       A     +    ++AVTG++GK++    ++      G      G  + 
Sbjct: 85  WLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELIRAALGPLGPVMASSGNENN 144


>gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 838

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 128/368 (34%), Gaps = 31/368 (8%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    M      I+ + +DSR +      +F A+   + DG  +I    A+G 
Sbjct: 5   IESITESIGARRMGNAPATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYITDLYARGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN----------TPILVVDNTRKFLSLFASRLYGKHPENI 117
              ++   ++ L D       N             L+V N  K L   A +   +    +
Sbjct: 65  RNFVLSEESFRLMDNGQLTIDNAMQRDDAQSIVNYLIVPNPLKALQKLAEQHRNQFQIPV 124

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK+ V  ++ Q+                 S  + ++++  P  ++     S L
Sbjct: 125 IGITGSNGKTVVKEWLHQLLSPERAI--------IRSPRSYNSQIGVPLSVWQMNEQSEL 176

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +           S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+  
Sbjct: 177 AIFEA-----GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFK-- 229

Query: 238 LPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  I   DD +    V K   +A     S     + +++ KV    +   ++    
Sbjct: 230 --NCDVVIYNGDDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKRDDCTVISYRYL 287

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D  F  P   +  + N+L     C+ + + +  + E + +L  +  R E     +   
Sbjct: 288 DMDNTFTLPFIDDASIENSLNCLAACLYLMLPAEQITERMARLEPIAMRLEVKEGKNNCL 347

Query: 357 RIYVDYAH 364
            I   Y  
Sbjct: 348 LINDSYNS 355


>gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
 gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
          Length = 821

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 124/359 (34%), Gaps = 22/359 (6%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIA 65
                 +   L       R  +I+ + +DSR +      +F A+   + DGH ++ +   
Sbjct: 2   SSSIENIEKVLGAKRFGNRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    VV               +   L + N  K L   A +   +    ++ +TG++G
Sbjct: 62  RGVRNFVV----GELPVDLQSFQDANFLQLINPLKGLQKLAEKHREQFQIPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+     + +         S  + ++++  P  ++L    + L+       
Sbjct: 118 KTIVKEWLYQLLSPDRVVT--------RSPRSYNSQIGVPLSVWLMNEHTELAIFEA--- 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G  +     IK   G  TN+G  H +   + Q     K+ LF+     +    
Sbjct: 167 --GISEMGEMEALQTIIKPTVGILTNIGGAHQENFFSLQDKCMEKLTLFK---DCDVIVY 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    +     S     + + ++ +    +   +     G   +F  P
Sbjct: 222 DGDNELISSCVAKSLFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L    + + + +    + E + +L  +  R E     +    I   Y  
Sbjct: 282 FIDDASIENSLHCLAVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNS 340


>gi|51598565|ref|YP_072753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
 gi|51573136|gb|AAU07161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
          Length = 463

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 146/425 (34%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAG----WIFVAIVGNKEDG 56
           K++D++      + +  +        E+ ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----EKVVSFYSLDSREIKDDNINVSLYFAYRGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +  + +  +  +             L+  +  K L   AS L  +   
Sbjct: 59  FSFVKYLIDLGVKCFICAREHESECIKYLNDNEGLVFLLTSDVIKLLQTLASCLIERTNF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                G     ++  S  L               TN+   H+   +  Q+    K ++  
Sbjct: 174 GFEVGGSYIGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQSIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +      +    + Y   + KRA  A   V  V +  + +++K    +  K       
Sbjct: 226 KNI---EIFVTNEMNDYCIYLEKRAKIANPNVKIVYFDFESLNIKSFSFLEGKFSYDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
             +   Y     S   +   I  +   G+  +V G   +      +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFIALKNMILDLDIQGKKFMVLGSFKELGEFAYKTHKDLIKEAVSMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|226321622|ref|ZP_03797148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
 gi|226232811|gb|EEH31564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
          Length = 463

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 144/425 (33%), Gaps = 35/425 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I  +   +    G  ++               +   +  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYA 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      ++  S  L               TN+   H+   +  QA    K ++  
Sbjct: 174 VFEVGVSYVGEMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIG 225

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +           + Y   + KRA  A   V  V +  + + +K    +  K       
Sbjct: 226 KNIEIFVV---NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLDGKFSFDFV- 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N   
Sbjct: 282 -YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY- 339

Query: 356 GRIYVDYAHTSNSLEMILKNI--RTITSGRIIVV--FGCGGDRD-QGKRPIMGKIALDLA 410
             +   Y     S   +   I    I + + IV+  F   G+   +  + ++ +      
Sbjct: 340 LILNDSYNGNMGSFIALKNMILDLNIQNKKFIVLGAFKELGELAYKTHKDLIQEAISMNF 399

Query: 411 DIAIV 415
           D   +
Sbjct: 400 DKIFL 404


>gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
 gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
          Length = 830

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 118/359 (32%), Gaps = 20/359 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               +   +    +   E  I+ + +DSR +      +F A+   +  G  +IP    +G
Sbjct: 4   TIESIAECIGARRVGECEATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63

Query: 68  AE-AIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
               +V    +   ++      S    L+V N  K L   A     +    I+ +TG++G
Sbjct: 64  VRNFVVTEEDFEKFKNGELGKLSTLNFLIVANPLKALQKLAEIHREEFKIPIIGITGSNG 123

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+                 S  + ++++  P  +             +   
Sbjct: 124 KTIVKEWLHQLLSPDRRIV--------RSPRSYNSQIGVPLSV-----WQLNEEAELGIF 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S  G        IK   G  TN+G  H +   + Q     K+ LF+     +    
Sbjct: 171 EAGISEMGEMNALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFK---DCDVVIY 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              ++  S  V K    A     S     + +++ +V    +   ++      D  F  P
Sbjct: 228 NGDNELISNCVAKSMLTAREIAWSRKDIERPLYISRVTKKEDHTVISYRYLDMDNTFCIP 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N L     C+ +   +  + E + +L  +  R E     +    I   Y  
Sbjct: 288 FIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNS 346


>gi|264680250|ref|YP_003280160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
 gi|262210766|gb|ACY34864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
          Length = 475

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 136/391 (34%), Gaps = 22/391 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  V +D+R +Q G +FVA+ G + D H F+PQA A        + A +    
Sbjct: 21  VGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQAQA--------AGAVAAIAS 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +    + V +T   L   A     +    ++AVTG++GK++V   +  I +    
Sbjct: 73  HGLEAAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGKTTVTQMIASILRA--- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G      +   +   +   P+ L +         +  + +  +  G         
Sbjct: 130 --HVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHR---IAVLEMGMNHPGEIAELAAIG 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N  R+H ++  T +A            LPK+  AI  A D Y+    + +  
Sbjct: 185 QPTVALVNNAQREHQEFMGTVEAVARENG-SVLRFLPKDGVAIFPAGDEYTPLWTELSAG 243

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               +      G  +    V   +      ++           + G   V NAL AA   
Sbjct: 244 RPSLMFGEAADGAQVFASDVVWANGAWSFALNTPQGVAAVQLHIAGRHNVRNALAAAACA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTI 379
            A G+    + + L     V GR   +    +G     +   Y    +S+   +  +  +
Sbjct: 304 HAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDSYNANPDSVAAAIAVLAEL 363

Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
            + +++V+   G  GD         G +A  
Sbjct: 364 PAPQLLVLGDMGEVGDDGPQFHAEAGALAQQ 394


>gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 498

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 3/148 (2%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I  D   L   +          +I+     DSR +  G +F A+ G K DGH F+P A+
Sbjct: 1   MIGVDLSRLAEWMQGRVEGDGTARISGTAVVDSRKVAPGDVFFALPGEKVDGHDFVPAAL 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA   VV        ++A +R    ++VV++  + L   A     +    ++AVTG++
Sbjct: 61  AAGAACAVVRRIDD--GWTAALRPGQGLIVVNDGLQALQDCARHYRTQLAIPVIAVTGST 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTST 152
           GK+S    +              G  + 
Sbjct: 119 GKTSTKDLLAAAVGAQRDVMKSPGNFNN 146


>gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
 gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
          Length = 843

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 119/370 (32%), Gaps = 25/370 (6%)

Query: 7   IYKDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQA 63
           I      ++  L        + R I  + +DSR + +    +F A+     DGH +IPQ 
Sbjct: 8   IMSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQL 67

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              G  A  +       +       +  I+ V  T + L   AS    ++   ++ +TG+
Sbjct: 68  YEHGVRAFFI---CEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGS 124

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+ V  F+  +                 S  + +++L  P  I   +    L+     
Sbjct: 125 NGKTVVKEFLYHLLSGCYRIV--------RSPKSYNSQLGVPLSILNMEEEHTLAIFE-- 174

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +      L   R+  I+   G  TN+G  H +   +       K++LF   +  +  
Sbjct: 175 -AGISMPMEMLRLQRI--IRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHF 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                 D   + +     +      S+     + H+    +      +T+    +     
Sbjct: 229 VYDADSDEIQRGIDNLGLSDKAIGWSLTPGKAYYHVSYSHSGDGTTIITVQHADESSTVT 288

Query: 304 FPLPGE---FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            P   +       + L   GL          VL     L  +  R E     +    I  
Sbjct: 289 IPFADQASIQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLIND 348

Query: 361 DYAHTSNSLE 370
            Y +  NSL 
Sbjct: 349 AYNNDINSLR 358


>gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056]
 gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056]
          Length = 828

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 127/359 (35%), Gaps = 21/359 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +    +      I+ + +DSR +      +F A+   + DG  +I     +G
Sbjct: 4   TIEDIARIIGARRIGDTPAAIDWLLTDSRSLSFPEETLFFALTTKRNDGTRYIRDLYTRG 63

Query: 68  AE-AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
               +V        +      S   +LVV N  K L   A +   +    ++ +TG++GK
Sbjct: 64  VRNFVVSEEGLKEVETFNFQPSTFNLLVVPNPLKALQKLAEQHRDRFQIPVIGITGSNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  ++ Q+     + +         S  + ++++  P  +             +  + 
Sbjct: 124 TIVKEWLHQLLSPERVIT--------RSPRSYNSQIGVPLSV-----WQMNGQTELAILE 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              S  G  +   + IK   G  TN+G  H +   + Q     K+ LF+         I 
Sbjct: 171 AGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFK----NCDVVIY 226

Query: 247 YADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             DD + +  V K   +A     S     + +++ KV    +   V+      D  F  P
Sbjct: 227 NGDDEFINNCVGKSMLSAREIAWSRKDMERPLYINKVEKQEDSTVVSYRYLDMDNTFTLP 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + N+L     C+ + + +  + E + KL  +  R E     +    I   Y  
Sbjct: 287 FIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPIAMRLEVKEGKNGCLLINDSYNS 345


>gi|114799693|ref|YP_761705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739867|gb|ABI77992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 141/452 (31%), Gaps = 45/452 (9%)

Query: 29  KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           ++   +S D+R +Q G +FVA+  ++ DGH F+               A +     +   
Sbjct: 24  EVTGSISIDTRTLQKGDLFVALK-DQRDGHDFVEA----------AFKAGAAGALVSRPM 72

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P++ V++  + L+        +   +  AVTG++GK+SV   + QI +  G + + +
Sbjct: 73  PGGPVVQVEDVLEALTQMGIAARVRCGAHRTAVTGSAGKTSVKEMLAQIYRAHGPAHWNV 132

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ LA+              +  ++ G    R   ++   G
Sbjct: 133 KSFNNHWGV----------PLTLARMPEE---TQRAVFEIGMNTPGEIAPRSQMVRPHTG 179

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR---AHNAG 264
             T +   H+    + +     K  +F   L      I+ ADD +   + +R       G
Sbjct: 180 IVTCIAAAHLQGLGSVEGIAEEKANIFAG-LESGGTIILPADDTFLDYLSERARSFCPTG 238

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                         +          +V +S+ G+         G     N   A      
Sbjct: 239 NVETFGASPDATARIVAYETDGRTSRVEVSIVGQRVAVTLNAVGAHWAQNVAAALLAASQ 298

Query: 325 IGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTIT 380
             +      E L      PGR   E +     G    +D  Y     S+   LK +    
Sbjct: 299 ASLSVKDCAEALSGYAPPPGRGTSETLVLPDIGEITLIDDAYNANPASMRAALKGLAQRA 358

Query: 381 SGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
             R +   G   +         R +   +     D   +        + + +   +   +
Sbjct: 359 GTRRLAALGDMKEIGDSSAAEHRGLASSVVEAGVDGVFLV-----GAEMQHLSEALPRDL 413

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     E      + L   DVL++  KG
Sbjct: 414 QQV-SAPTADELWNQLQKALRAGDVLLI--KG 442


>gi|329940199|ref|ZP_08289481.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
 gi|329301025|gb|EGG44921.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
          Length = 462

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 140/428 (32%), Gaps = 45/428 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A  +VVSSA    +      +    P++   +        A 
Sbjct: 54  GVTVHLGH--AAEHLADDASCVVVSSAIRADNPELARAAERGIPVVHRSD------ALAR 105

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   +AV GT GK++  S +       G           + +   +        
Sbjct: 106 LMDGLRP---IAVAGTHGKTTTTSMLAVSLTALG-REPSYAIGGDLDAPGSNALHGEGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + +     
Sbjct: 162 FVAEADESDRSFHKYA--------------------PEVAIVLNVELDHHANYASMDEI- 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                 F   +      ++ AD   ++E+ +R       V     +   + +  V     
Sbjct: 201 YESFETFAGRVVPGGTLVVSADHEGARELTRRLAKTVRTVTYGAAEDADVRVLSVVPHGL 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +VT+ ++G    F   +PG    +NA+ A     A+GI +A +   L     V  R +
Sbjct: 261 TSEVTVELDGAPLTFTVSVPGRHYAHNAVAALVAGRALGIPAAELAPALAAYTGVKRRLQ 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIA 406
             G  + G ++   YAH    +   L+ +R+ T GRI+VVF      R Q     MG+ A
Sbjct: 321 LKG-EAGGVQVVDSYAHHPTEMTADLEAMRSGTRGRILVVFQPHLFSRTQELGKEMGE-A 378

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L LAD ++V D  P  EDP      E I                  E       M    D
Sbjct: 379 LALADASVVLDIYPAREDPLPGVTSELIIDAARAAGADVRAVHGMAEVPEALAGMAEPGD 438

Query: 461 VLVVAGKG 468
           +++  G G
Sbjct: 439 LVLTMGAG 446


>gi|161511189|ref|NP_813012.2| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
 gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
          Length = 849

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 117/378 (30%), Gaps = 39/378 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
               +   +    +   E  I+ + +DSR +      +F A+   + +G  +I +   +G
Sbjct: 4   TIESIAEYIGARRVGEHEATIDWLLTDSRSLSFPEETLFFALPTKRNNGARYISELYDRG 63

Query: 68  AE-AIVVSSAYSLQDFSATIRSNT--------------------PILVVDNTRKFLSLFA 106
               +V    +   +       N                       L+V N  K L   A
Sbjct: 64  VRNFVVTEEDFKRMENGEWKMENAMQQDGAQPTPNSRLSILDFSNFLIVANPLKALQKLA 123

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                     ++ +TG++GK+ V  ++ Q+                 S  + ++++  P 
Sbjct: 124 EAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIV--------RSPRSYNSQIGVPL 175

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +             +       S  G        IK   G  TN+G  H +   + Q  
Sbjct: 176 SV-----WQLNEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEK 230

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
              K+ LF+     +       ++  S  V K    A     S     + +++ KV    
Sbjct: 231 CMEKLTLFK---DCDVVIYNGDNELISNCVAKSMLTAREIAWSCKDIERPLYISKVTKKE 287

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   +       D  F  P   +  + NAL     C+ +   +  + E + +L  +  R 
Sbjct: 288 DHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRL 347

Query: 347 EFVGTNSRGGRIYVDYAH 364
           E     +    I   Y  
Sbjct: 348 EVKEGKNNCILINDSYNS 365


>gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 835

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 117/368 (31%), Gaps = 25/368 (6%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIA 65
                ++  L        + R I  + +DSR + +    +F A+     DGH +IPQ   
Sbjct: 2   STLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G  A  +       +       +  I+ V  T + L   AS    ++   ++ +TG++G
Sbjct: 62  HGVRAFFI---CEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++  +                 S  + +++L  P  I   +    L+       
Sbjct: 119 KTVVKEYLYHLLSGCYRIV--------RSPKSYNSQLGVPLSILNMEEEHTLAIFE---A 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +      L   R+  I+   G  TN+G  H +   +       K++LF   +  +    
Sbjct: 168 GISMPMEMLRLQRI--IRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHFVY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D   + +     +      S+     + H+    +      +T     +      P
Sbjct: 223 DADSDEIQRGIDNLGLSDKAIGWSLTPGKAYYHVSYSHSGDCTTTITAQHADESSTVTIP 282

Query: 306 LPGE---FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +       + L   GL          VL     L  +  R E     +    I   Y
Sbjct: 283 FADQASIQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAY 342

Query: 363 AHTSNSLE 370
            +  NSL 
Sbjct: 343 NNDINSLR 350


>gi|221202510|ref|ZP_03575540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
 gi|221208168|ref|ZP_03581173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221172071|gb|EEE04513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221177605|gb|EEE10022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
          Length = 468

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 80/468 (17%), Positives = 146/468 (31%), Gaps = 45/468 (9%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                         VS+DSR + AG +FVA+ G + D H F+          +    A +
Sbjct: 15  GATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFL--------ADVAARGAAA 66

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                A      P++V   TR  L   A     +    ++AVTG++GK++V   +  I  
Sbjct: 67  ALVAQAPAGVALPMIVGGETRASLGALAHGWRKRFALPVVAVTGSNGKTTVKEMIASIFA 126

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
            +  +  ++     +++           P+ L +  +      +  + +          R
Sbjct: 127 AAVGADARLATAGNLNNDV-------GLPLTLLRLTAAHRLAVIE-LGMNHPGETEILAR 178

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L           N  R+H ++  T +A   A                ++  D     + +
Sbjct: 179 LTA--PTVALVNNAQREHQEFMATVEAV--ALEHAAVIHALPPDGVAVFPADDAYASIWR 234

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A      +    +  +     +V    +  ++ I              GE    NAL A
Sbjct: 235 VAATGNRILDFALHDDERQTAAQVAGRLHGGELAIDTPSGTLTVRLRALGEHNARNALAA 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVD-YAHTSNSLEMILK 374
               +A G+  + + + LE    V GR +    ++    G  +  D Y    +S+   + 
Sbjct: 295 TAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAAID 354

Query: 375 NIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAE 431
            +    + R++V+   G  GD        +G  A     D      D  R  D      E
Sbjct: 355 VLAAQPAPRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASR--DACAAYGE 412

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
                                       D L+ AG G E   +V    
Sbjct: 413 AARHFDDVGTLV----------------DALLAAGYGAEASVLVKGSR 444


>gi|217979592|ref|YP_002363739.1| UDP-N-acetylmuramate--L-alanine ligase [Methylocella silvestris
           BL2]
 gi|254766012|sp|B8ETM5|MURC_METSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217504968|gb|ACK52377.1| UDP-N-acetylmuramate/alanine ligase [Methylocella silvestris BL2]
          Length = 468

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 145/441 (32%), Gaps = 61/441 (13%)

Query: 50  VGNKED-GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF 105
            G     GH     A   G AE +VVS+A    +          + VV   R+   L+  
Sbjct: 51  KGAIIHIGHR----ADNLGDAEVVVVSTAIKRNNPELAYARELRLPVV---RRAEMLAEL 103

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                    +  +A+ GT GK++  S V  + +  G     I     I+++  ++RL   
Sbjct: 104 MRL------KQCVAIAGTHGKTTTTSLVATLLEAGGFDPTVI-NGGIINAYGTNSRLGAG 156

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             + +    S                          +       TN+  +H+D+  T + 
Sbjct: 157 DWMVVEADESD--------------------GTFLKLPADVAIITNIDPEHLDHFGTFEN 196

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A  R F E +P    A++  D    +E++ +  +                +    A 
Sbjct: 197 IRKA-FRSFVENIPFYGFAVMCLDHPTVQELVGQIEDRRVITYGENPHADVRLVDIDLAG 255

Query: 286 HNKQQVTISVEGKDFDFL------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              +   +  + K            P+PG     NA  A  +   +G+    +   L   
Sbjct: 256 GMSRFSVVVRDRKSGGETVIEKILMPMPGLHNALNATAAIAVAHQLGMSPDQIRGALAGF 315

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  RF   G    G  ++ DYAH    +  +LK  R  T GR+I +      R     
Sbjct: 316 GGVKRRFTRTG-EWNGAIVFDDYAHHPVEIAAVLKAARASTKGRVIAIV--QPHRYTRLH 372

Query: 400 PIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----- 452
            +  + A     AD  IV D  P  E P +       G+   I+      A+  A     
Sbjct: 373 SLFNEFAACFNDADAVIVADVYPAGEAPIEGAD--RDGLVAAIKARGHRLAMPLARPADL 430

Query: 453 ----IEMLNKQDVLVVAGKGH 469
                ++    D +V+ G G+
Sbjct: 431 SRLVRQLARPGDYIVLLGAGN 451


>gi|167627720|ref|YP_001678220.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241668292|ref|ZP_04755870.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876824|ref|ZP_05249534.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167597721|gb|ABZ87719.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254842845|gb|EET21259.1| cyanophycin synthetase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 940

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 116/374 (31%), Gaps = 33/374 (8%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ +  V  + + +G             +        T  P      L    
Sbjct: 498 AITGTNGKTTTSRMVAHMWKNAGKIVGLTTTDGVYINGKLTVAGDTTGPTSAQMVL---K 554

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  GL +  +       G+  N+  DH+           AK++      
Sbjct: 555 DPSVEMAILETARGGLLRSGMGYDYCNVGACLNVSSDHLGLKGINTLEDLAKVKSIVPQA 614

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K+   +   D    K   K        V             +        +  ++ +  
Sbjct: 615 AKDVAVLNADDPNVLKMSAKVTAKHILYVTMNPEHALVKQHIRAGGKACIIEKGVNGDMI 674

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEKL 339
                         +               N++ A  +C ++G+    + +     +   
Sbjct: 675 TIFDNNVHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDLRDGLRTFVTSF 734

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
           +  PGR           ++ +DY H   +++++ + I  +   G+ I V    GDR    
Sbjct: 735 YQAPGRM--NWFEEHPFKVLMDYGHNPAAIKLVSQMIDNMEFSGKKICVLASPGDRRDQD 792

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIR 450
              + K A    D  I   DD+ R     +I   +  G+              +  +A+ 
Sbjct: 793 VYEIAKTAAPYYDYFICKGDDDTRGRADGEIPRMLKEGLIEAGVDASRIETIQSEQKAVD 852

Query: 451 TAIEMLNKQDVLVV 464
            A+ M    D++V+
Sbjct: 853 HALSMAQDGDLVVI 866


>gi|319777842|ref|YP_004134272.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171561|gb|ADV15098.1| cyanophycin synthetase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 907

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 130/384 (33%), Gaps = 43/384 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            A+TGT+GKS+ A  +  I Q +G +      T     +    R+ T        A   L
Sbjct: 496 FAITGTNGKSTTARMLSHILQANGATVGLTSTTGV---YLNGERIMTGDCSGPQSARIVL 552

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              GV    +E +  G+ +  L       G+  N+  DH+           A+++     
Sbjct: 553 REPGVDVAVLECARGGILREGLAFDACDIGAVLNVHGDHLGLRGIDTIDDLAEVKSVVVE 612

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL------------------ 279
             +     I   D      M R         S+  +  +                     
Sbjct: 613 SVRRGGWSILNADDIHTSAMSREAGGRICYFSLLNRSDWPDFLCSHVAEGGRAVTRERSR 672

Query: 280 --KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL---- 333
               +    + + + + ++  +    F    EF V N+L A  +     I +A +     
Sbjct: 673 DGWDIVIHEDGESMFL-MDVDEIPATFEGAAEFNVANSLAAVAMAHCHDIPAATIRAALA 731

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCG 391
           E        PGR      +  G R  VDYAH    L+ + K +  +  G  R I +    
Sbjct: 732 EFTTSFEHSPGRLNV--FDGHGFRTIVDYAHNPEGLKALGKLVSHMKRGYQRTIGLVAIP 789

Query: 392 GDR-DQGKRPIMGKIALDLADIAIVTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNR--- 445
           GDR D   R  MG +A  + D+ +  +D    R   P  I   +  G         R   
Sbjct: 790 GDRRDCDIR-EMGAVASRIFDVIVFKEDEHELRGRAPGTIAGLLREGALNAGCAPGRIQA 848

Query: 446 ----IEAIRTAIEMLNKQDVLVVA 465
                EA+   +++  ++D++V+ 
Sbjct: 849 VCPEKEAVDVCLQLAREKDLVVLT 872


>gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A]
 gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A]
          Length = 849

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 139/383 (36%), Gaps = 24/383 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++ + L +     RE  ++ + +DSR +      +F A+   + DGH +I +  A+G 
Sbjct: 28  IEKIASLLGVEIYGGREGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYISELYARGV 87

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV     L      + S    L V ++++ L   A+    +    I+ VTG++GK+ 
Sbjct: 88  RFFVVE---ELPCEWEKLYSQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSNGKTV 144

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+   S   +         S  + ++++  P  ++L           V      
Sbjct: 145 VKEWLYQLLSFSKRVT--------RSPRSYNSQIGVPLSVWL-----LNEQTQVGIFEAG 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +   + IK   G  T+LG  H +   + +     K+RLF      +     Y 
Sbjct: 192 ISKKGEMEVLRNIIKPTIGVLTSLGDAHQENFVSMEEKCREKLRLF---TDVDVLVYPYD 248

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLP 307
           D      V   +        SV      + +K +        +  I  + K+  +  P  
Sbjct: 249 DKLIRSCVDTLSFKGKGLGWSVKDASVSLFIKDIKKSELSTTIAYIWKQEKEDSYTIPFI 308

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH--T 365
            +  +Y+++    LC+ +G+   ++   +  L  V  R E          I   Y     
Sbjct: 309 DDASIYDSITCLALCLYLGVKKEVLKARMPLLEPVAMRLEVKEGQRGCTLINDSYNSDIN 368

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
           S  + +   N R    GR   + 
Sbjct: 369 SLDIALDFMNRRPDHKGRKRTLV 391


>gi|299533122|ref|ZP_07046507.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
 gi|298718899|gb|EFI59871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
          Length = 475

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 136/391 (34%), Gaps = 22/391 (5%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  V +D+R +Q G +FVA+ G + D H F+PQA A        + A +    
Sbjct: 21  VGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQAQA--------AGAVAAIAS 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +    + V +T   L   A     +    ++AVTG++GK++V   +  I +    
Sbjct: 73  HGLEAAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGKTTVTQMIASILRA--- 129

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G      +   +   +   P+ L +         +  + +  +  G         
Sbjct: 130 --HVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHR---IAVLEMGMNHPGEIAELAAIG 184

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +       N  R+H ++  T +A            LPK+  AI  A D Y+    + +  
Sbjct: 185 QPTVALVNNAQREHQEFMGTVEAVARENG-SVLRFLPKDGVAIFPAGDEYTPLWTELSAG 243

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               +      G  +    V   +      ++           + G   V NAL AA   
Sbjct: 244 RPSLMFGEAADGAQVFANDVVWANGAWSFALNTPQGVAAVQLHIAGRHNVRNALAAAACA 303

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTI 379
            A G+    + + L     V GR   +    +G     +   Y    +S+   +  +  +
Sbjct: 304 HAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDTYNANPDSVAAAIAVLAEL 363

Query: 380 TSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
            + +++V+   G  GD         G +A  
Sbjct: 364 PAPQLLVLGDMGEVGDNGPQFHAEAGALAQQ 394


>gi|313837461|gb|EFS75175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA2]
 gi|314929329|gb|EFS93160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL044PA1]
 gi|314971668|gb|EFT15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA3]
 gi|328906993|gb|EGG26759.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium sp.
           P08]
          Length = 485

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 136/441 (30%), Gaps = 59/441 (13%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +V  D+R +  G +++A+ G + DGH F   A   GA A++ + +   Q          P
Sbjct: 27  DVVIDTRKVTPGALYIALPGARVDGHDFTQAAQDAGAAAVLTTRSTDAQ---------VP 77

Query: 92  ILVVDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
            L+VD+ R  LS  A  +     +     +A+TG+SGK+S    + QI +  G +   +G
Sbjct: 78  HLIVDDGRAGLSRLARHVVATERERGMLTIALTGSSGKTSTKDMLAQILETFGPTVAPVG 137

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                     +N +  P       A             + A   G        +      
Sbjct: 138 S--------FNNEIGAP-----LTACRSNEDTSFLVSEMGARGLGHISWLTSIVPPDVAM 184

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+G  H+    +++    A        L  +  A++ A D     +  R H       
Sbjct: 185 VLNVGIAHLGEFGSREVIAQA-KGEIVGALAPDGWAVLNAADNLIAGMASRTHGHIAWFS 243

Query: 269 SVGYQGKFIHLKKVCAIHNK------QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 +     +  A             T++       +  P+       + +  A   
Sbjct: 244 PDADHRRPDAEIEAWAESIHADDLDRHSFTLAARYGGTTWRSPVSLTTMGAHQVANAVAA 303

Query: 323 IAIGIDSALVLEHLEK-------------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            A  + +  + +  ++             +     R +          +   Y    +S+
Sbjct: 304 TAAALAALAMNDGTDEQTVIQIAGALSNAVSRSAMRMQLRERADGLVLVEDCYNANPDSM 363

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +          V      RD   R         L D+  +  D+ R  + E  R
Sbjct: 364 AASLAAMGH--------VLAARRARDPQTRG-----VAVLGDMLELGADSARL-NAESGR 409

Query: 430 AEIIHGIPGFIEKGNRIEAIR 450
                G    I  G+  E+I 
Sbjct: 410 RAAQAGFDVIIAVGDEAESIA 430


>gi|206896268|ref|YP_002247020.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738885|gb|ACI17963.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 440

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/386 (12%), Positives = 112/386 (29%), Gaps = 40/386 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
           ++     +++N      +   + + + V+  S     G +F+A+ G+K  G  F  QA+ 
Sbjct: 1   MLASQLAKIVNG----QLVGDDFEFDHVAFSSNDCNPGTLFIALPGSKTHGAKFATQAMQ 56

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  ++        +           ++V +  + +      L   +   I+ V G SG
Sbjct: 57  NGASGLLTDVEPEASN----------YVLVTDAFEAVKKLGETLVRSYSGKIVVVLGASG 106

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+++    + +                 ++              L        +     +
Sbjct: 107 KTTLKELARSL-----APVRVWSSYGNRNTIISL-------VTDLFNERESALNAPYWIL 154

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                        L      A  FT+LG +H+++ +         ++            +
Sbjct: 155 EFGIHDKKDADDFLQVFNPYAALFTSLGAEHLEFLENVDVAVRTNLK------------V 202

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A       V          +        +  +             +   G++ D + P
Sbjct: 203 GMAATKRFALVSDEYSVEDAILFGSPQTSAWFDISSFT-CDGCTLGKLMCHGEEKDVVLP 261

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G+    +   AA   ++ G     +         + GR +           +  Y   
Sbjct: 262 FWGKRSAQSVAGAAAFWVSEGFGLDELPWENLDTINIWGRQQLTRWGDL-LIFFDAYNAN 320

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG 391
             S++  L+ +  +  G+  +V G  
Sbjct: 321 PESMKEFLEVVSEVPYGKKGLVIGDM 346


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 134/414 (32%), Gaps = 44/414 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+AIVVS+A    +       +   P L   +    L    +   G      +AV G+
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAAL---VNEYDG------IAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +     R+G+S   I     +     + +L T                   
Sbjct: 121 HGKTTTTSMIGVTLDRAGVSPTVI-VGGEVPDLGTNAKLGT------------------- 160

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 S           ++      TN+  DH+D++ T +    A  R F   +  +  
Sbjct: 161 -SRYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEA-FRTFISQIDADGT 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  ++   + +                        + C                    
Sbjct: 219 AVLCYENEILRRLGAETDRTVVSYAIDAAADYRAADIETCGSVISFT-VFERGTALGRIS 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V NAL    +    G+D   + + L   H    RF+  G    G  +  DYA
Sbjct: 278 LHIPGRHNVLNALACVAVARLAGLDFDRIADALAHFHGAKRRFQTKGKER-GIWVVDDYA 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L   R    GR++ VF      R Q  R   G      AD+ ++TD     
Sbjct: 337 HHPTEIAATLAAARQTEPGRLVCVFQPHRYSRTQLLRAEFGGCFAA-ADLLLLTDVYAAG 395

Query: 423 EDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      E +  E+        +    R + ++   E +   D+++  G G+
Sbjct: 396 EAPIPGISGETLMEEVARQTGQDAVYLPERADLVQYLAEHVRPGDLVITMGAGN 449


>gi|319764376|ref|YP_004128313.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|330826595|ref|YP_004389898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
 gi|317118937|gb|ADV01426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|329311967|gb|AEB86382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
          Length = 463

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 166/480 (34%), Gaps = 49/480 (10%)

Query: 1   MKLQ---DLIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L+   DL+    P   +      P+         V +D+R + AG +FVA+ G + D 
Sbjct: 10  MTLRQAFDLLRARIPAARLVGDGATPLM-------RVHTDTRTLAAGDLFVALKGERFDA 62

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           +  +PQA A        + A +     A   +  P + V +T   L + A+    +    
Sbjct: 63  NSLLPQARA--------AGAAAAIAHGALEAAGLPGVEVPDTLAALGVLAAGWRAQRTLP 114

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GK++V   +  + +     +      +T  +F  D  L            + 
Sbjct: 115 LVAVTGSNGKTTVTQMIASVLRAWKGDAA----LATQGNFNNDVGLPLTLLRLRPAHEAA 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           +   G+ H    A   G+        +       N  R+H+++  T +A           
Sbjct: 171 VVELGMNHPGEIAYLAGIA-------RPTVALVNNAQREHLEFMHTVEAVARENG-SVLA 222

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L     A+  A DA++    + A     R ++ G     +             + +   
Sbjct: 223 ALCAGGVAVFPAADAFTPLWRELAGAH--RCITFGGDAADVRCAHAQWQDGAWHLRVQTP 280

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              FD L  + G   V NAL AA   +A G   A +   L     V GR        +G 
Sbjct: 281 QGAFDTLLSIAGRHNVTNALAAAACALAAGAPLAAIARGLAAFEPVKGRSRAFAVRCQGR 340

Query: 357 ---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLAD 411
               +   Y    +S+   +  +  +   R++V+   G  G +        G  A     
Sbjct: 341 AIAVVDDSYNANPDSVRAAIDVLAELPGPRLLVLGDMGEVGGQGPQFHAEAGAHARSRGI 400

Query: 412 IAIV--------TDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQD 460
             +                ED   + A +     G+   + KG+R   +   ++ + ++D
Sbjct: 401 EQVFALGALSAHVAGARHFEDMASLIAAVRAQLPGVGSVLVKGSRFMKMERVVQAIEEED 460


>gi|149201998|ref|ZP_01878972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
 gi|149145046|gb|EDM33075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
          Length = 478

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 155/458 (33%), Gaps = 45/458 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R ++ G +FVA+   + DGH F+ QA+A+GA A +VS           + +  
Sbjct: 24  TGVSIDTRTLKPGDLFVALNAAR-DGHEFVAQALAKGAAAALVSR------IPEGLPAEA 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V++ +K L         +    ++AVTG+ GK+S    ++ +    G +       
Sbjct: 77  PLLIVEDVQKGLEDLGRAARARSEARVVAVTGSVGKTSTKEMLRDVLGHQGRTHAAEASY 136

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA             + +  +  G         +      T
Sbjct: 137 NNHWGV----------PLTLA---RMPVDTEFAVIEIGMNHPGEIAPLACMARPHVAVIT 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H++  +        K  +FE  L     A+I AD A +  +  +A     R+LS 
Sbjct: 184 TVAAAHLEAFENIDGIAKEKASIFEG-LEPGGVAVINADIATTPILRAKAAQHAARILSF 242

Query: 271 GY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G  +G    L  V    +              +   +PG     NAL    +   +G D 
Sbjct: 243 GTARGAHHRLLNVELHDHVTVGHARAWRSPLVYKVGVPGRHFAMNALAVLAVAQVLGCDR 302

Query: 330 ALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           A+ +  L       GR           +       +D A  +N   M         +   
Sbjct: 303 AVAMADLASWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAALEVLAAAHPR 362

Query: 385 IVVFGCGGDRDQGKRPIMGKIA-------LDLADIAIVTDDN------PRSEDPEKIRAE 431
             V      R       M ++          LAD+  +   N      PR      I  E
Sbjct: 363 DGVGRVSRGRRIAILGDMLELGPDEAAMHAGLADLPYMARINEIHCVGPRMRALWDILPE 422

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
              G        +  E    A  +++  DV++V G KG
Sbjct: 423 ARRG----RWVASAEELAAQAHRLIDAGDVVLVKGSKG 456


>gi|312196218|ref|YP_004016279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
 gi|311227554|gb|ADP80409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
          Length = 493

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 128/423 (30%), Gaps = 39/423 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I     E+            +    +     DSR ++ G +FVA+ G + DGH F    
Sbjct: 1   MIPLTLAEVAAATGGRLDGGADAATLVTAAVVDSRLVEPGALFVALPGARVDGHDFAA-- 58

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
                     + A   +   A    + P ++V +    L   A+ +       +LA+TG+
Sbjct: 59  ---------GAVAAGARAVLAARPVSVPAVLVADPAGALMALAAHVRTLTKATVLAITGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++    +          +  +G      +           P+ L             
Sbjct: 110 SGKTTTKDLL----------ADLLGSLGPTLAPPGSFNNEIGLPLTLL---RLEPDTEYV 156

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A   G         +   G   N+G  H+  +   +A         E        
Sbjct: 157 ALEMGARGIGHIAALCQVARPQVGVVINVGSAHVGEYADGRAGI--AQAKGELAEAATDV 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++ ADD     +  RA         V         +       +    +  + +     
Sbjct: 215 VVLNADDPLVAAMRPRAAGRRVVTFGVAADADVRAERIALDAAGRASFDLVTDAERHRVA 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDY 362
             L GE QV NAL AA   +A+G+        L         R E     S    +   Y
Sbjct: 275 LALVGEHQVGNALAAAAAALAVGMTPTAAAAALAAARPRSRWRMEVTTAPSGLVVVNDAY 334

Query: 363 AHTSNSLEMILKNIRTI------TSGRIIVVFGCGGD---RDQGKRPIMGKIALDL-ADI 412
                S+   L+ +  +         R   V G  G+     + +   +G+ A  L  D 
Sbjct: 335 NANPESMRAALRALVGLGADGGPDRRRTWAVLGPMGELGTAAEAEHAELGRFAARLGVDR 394

Query: 413 AIV 415
            +V
Sbjct: 395 TVV 397


>gi|332363454|gb|EGJ41237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK355]
          Length = 454

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 79/484 (16%), Positives = 152/484 (31%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI              +  +    S    +    ++VD+        A     K   ++L
Sbjct: 54  FIAT----------AFAQGAAATLSERPVAEGAYILVDDVLTAFQRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   S  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDTDIFLTRLEERKDSLSFGCNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSETAIAQAFSELELTRNRTEWKKAANGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  I+
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANSGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIL 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R ++      D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVRESLTSA---DQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 497

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 93/463 (20%), Positives = 155/463 (33%), Gaps = 43/463 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV---VSSAYSLQDFSA 84
            ++ +V +DSR  + G +FVAIVG + DGH  +PQA A GA A +   V +  +    + 
Sbjct: 36  TRVTDVVTDSRQAEEGSLFVAIVGERTDGHRHVPQAAAAGARAALVSNVEAVRAAMAEAG 95

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPEN---------ILAVTGTSGKSSVASFVQQ 135
               + P+++V +T   L   A     +  E          ++A+TG+ GK++     +Q
Sbjct: 96  RDPESLPLVIVPDTVAALGGLARSHLAQLREQASSRGETLSVIAMTGSVGKTTTKDLTRQ 155

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I      +   +   +               P+ + +A           + + AS  G  
Sbjct: 156 ILAAQAPTVAPVASFN----------NEIGLPLTVLRADHTTR---YLVLEMGASGSGHI 202

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            +      L A +   +G  H+    +      A        L     A++  DD  S  
Sbjct: 203 AYLTSIAPLDAAAVLMIGHAHMGGFGSVDGVARA-KSEIVTGLLPTGVAVLNLDDPRSAA 261

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--LPGEFQVY 313
           + + A        + G     +    V        V                LPG   V 
Sbjct: 262 MRELAPGRVLTFSASGDPRADLRASAVELDEQAHAVLDLHLPGARPERLRLGLPGRHNVT 321

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           NAL AAGL +A G+D + VL+ L       P R +          I   Y    +S+   
Sbjct: 322 NALAAAGLALAAGLDPSQVLQALAGAGLESPHRMDVRECGGV-LVIDDSYNANIDSMTAA 380

Query: 373 LKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L+ +  +   R  VV        G          G++A       +VT      +     
Sbjct: 381 LEALPALAGQRRRVVIISEMLELGSASHADHTRTGELAAAAGAQVLVTI----GQGAAPA 436

Query: 429 RAEIIHGIPGFIEKGNRIEAIRT---AIEMLNKQDVLVVAGKG 468
                      IE  +   AI         L   D +++  KG
Sbjct: 437 AQAARAAGVHTIELPDAQAAIELLDGGHSPLRPADAVLI--KG 477


>gi|332799095|ref|YP_004460594.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696830|gb|AEE91287.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 468

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 144/412 (34%), Gaps = 45/412 (10%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +VVSSA    +      I SN P++   +    L           P+  +A+TG  
Sbjct: 64  GADIVVVSSAIPKANPEYIRAIESNIPVIHRADMLSLL---------MTPKKGIAITGAH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I +++G     I     ++    +  L     +      S  S      
Sbjct: 115 GKTTTTSMISLIMEKNGFDPTVI-IGGELNDIGGNATLGKGEYLVAEADESDGSFMK--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +       TN+  DH+DY++   +   A  + F + + K+   
Sbjct: 171 -----------------LHPHIAVITNIENDHMDYYKNMNSMKKA-FKKFIDNVNKDGFI 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           I   D+ + +E++K  +                  K V          +    K      
Sbjct: 213 IFGNDNKHVQELVKETN--KEYYTVGINYPSDFMAKNVKMNGLITHFDVCFREKLLGKVE 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   + NA  A  +   IGID   ++E ++    V  RF+ + ++ RG ++  DYA
Sbjct: 271 LHVPGLHNILNATTAIAVGNRIGIDMEGMIEAIKTFRGVQRRFQII-SDIRGIKVIDDYA 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    ++  L+  R     +I  +F      R Q      G   +D AD  I+T      
Sbjct: 330 HHPTEIKATLRAARNCNPKKIYAIFQPHRYTRTQLLAEEFGAAFID-ADEVIITSIYSAG 388

Query: 423 EDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E P K      I   +       +   N+ +     ++     D ++  G G
Sbjct: 389 EQPIKGVSSALIINSLKRNEKNVVFIENKEDIADYILDRAMPGDYILTIGAG 440


>gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
 gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
          Length = 826

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 151/397 (38%), Gaps = 28/397 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +       ++  I+ V +DSR +      +F A+   + DG  +IP+  A+G
Sbjct: 4   TIEKVTTLIGARRYGDKDANISFVLTDSRSLCFPEETLFFALKTERNDGQNYIPELYARG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV     + +  AT   ++  L V  + + L   A R   ++   I+ +TG++GK+
Sbjct: 64  VRNFVVE---VVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+     + +         S  + ++++  P  + L        +  V     
Sbjct: 121 MVKEWLYQLLSPQMVVT--------RSPRSYNSQIGVPLSVLL-----LNENTQVGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+   G FT LG  H +   + +A  + K++LF      E+     
Sbjct: 168 GISQPGEMMALRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH---DTEAIVYSA 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPL 306
            ++  ++ + +  +       SV       ++K +     +  V+   +G+ +  +  P 
Sbjct: 225 DNEVMAQCLSQYDYKGQKLDWSVKNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLPF 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH-- 364
             +  V N++  A + + +G+  A + E + +L  V  R E          I   Y    
Sbjct: 285 IDDASVENSITCAVVSLHLGLTPATISERMAQLEPVAMRLEVKEGQHGCTLINDSYNSDF 344

Query: 365 TSNSLEMILKNIRTITSGRIIVV----FGCGGDRDQG 397
            S  + +   N R    GR   +        GD D+ 
Sbjct: 345 NSLDIALDFMNRRPDHKGRRRTLILSDILQSGDTDKD 381


>gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
 gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
          Length = 466

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 141/439 (32%), Gaps = 28/439 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +  G +FVA+VG + D H F+  A     +     +  +       +     +
Sbjct: 30  VCTDTRALTPGCLFVALVGERFDAHAFVDAAA----KGGAAGAVVARGRPLPALPDGLTL 85

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             VD+T + L         +    + AV G++GK++    V  I    G +    G  + 
Sbjct: 86  YEVDDTLRALGALGRHHRQRFRIPVCAVGGSNGKTTTKEMVGAILATRGPALKTEGNLN- 144

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                         P+ L              + V  +  G  +     ++  AG  T +
Sbjct: 145 ---------NEIGVPLTLF---RLEPRHVAAVIEVGMNQPGEIERLARVVQPDAGVITVV 192

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             +H++   + +    A+  LF+E+    +  +    D            A         
Sbjct: 193 QPEHLEGLGSIEGVAAAEGELFQEMGHGTTIVV--NVDDALIPAQAERSGAQRLTFGRAE 250

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                              T+   G+++       G     NA  A  + +A+G      
Sbjct: 251 HADVRLADVKTLGREGMVATVRHLGREWPVRLHFVGPHNAQNATAAFAVALALGYTPEEC 310

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGC 390
           +  LE       R   V        I   Y     S++  L+ + T+    GR +VV G 
Sbjct: 311 VRGLESARPYSRRLNVVDGQHGVTVIDDCYNANPASMDAALETLGTLVPASGRAVVVLGD 370

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
             +   G+     ++   +   A +     PRS    +  A +      F +       +
Sbjct: 371 MLELGPGELEEHARLGGQIPSHAALAAFFGPRSLKGWE-AASMGESAAHFTDVEPL---M 426

Query: 450 RTAIEMLNKQDVLVVAGKG 468
                 L + DV++V  KG
Sbjct: 427 AWLAPRLREGDVVLV--KG 443


>gi|224534237|ref|ZP_03674815.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
 gi|224514339|gb|EEF84655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
          Length = 463

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 145/426 (34%), Gaps = 37/426 (8%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-----IFVAIVGNKED 55
           K++D++      + +  +        E+ +   S DSR I  G      ++ A  GNK D
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----EKVVAFYSLDSREIN-GDNINVSLYFAYKGNKVD 57

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           G  F+   I  G +  + S  +  +             L+  +  K L   AS L  +  
Sbjct: 58  GFSFVKYLIDLGVKCFICSRDHESECIEYLNDNEGLVFLLTSDVIKLLQTLASVLIERTS 117

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+TG++GK++    +  I  +   +    G  ++               +   +  
Sbjct: 118 FKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEY 172

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +           +E  S  L               TN+   H+   +  QA    K ++ 
Sbjct: 173 AVFEVGVSYVGEMELLSQILK--------PEIVIITNINYAHMQAFKELQAIAFEKSKII 224

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + +           + Y   + KRA  A   V  V +  + +++K    +  K      
Sbjct: 225 GKNIEIFVV---NEKNDYCAYLEKRAKIANPNVKIVYFDFENLNIKSFSFLEGKFSYDFV 281

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              K F++   L G   ++NA+    L + +G+    + E L +     GR E +  N  
Sbjct: 282 --YKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLIETTFQKGRAEILIKNGY 339

Query: 355 GGRIYVDYAHTSNSLEMILKNI--RTITSGRIIVV--FGCGGDRD-QGKRPIMGKIALDL 409
              +   Y     S   +   I    I + + IV+  F   G+   +  + ++ +     
Sbjct: 340 -LILNDSYNGNMGSFIALKNMILDLNIQNKKFIVLGSFKELGEFAYKTHKDLIQEAVSMN 398

Query: 410 ADIAIV 415
            D   +
Sbjct: 399 FDKIFL 404


>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
 gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
          Length = 811

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              EL++               + S DSR    G  F+AI   + DGH +IP A+A GA 
Sbjct: 4   TLAELLDAGGTLVGPSVTDTFTDWSYDSRLTAPGECFIAIRTARADGHDYIPAALAAGAR 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            ++                N  ++V  + +  L  +AS         ++AVTG  GK+
Sbjct: 64  GVLCRR-------PPHAADNATVIVCSDPQTVLLRWASNRLRALHPTVVAVTGGIGKT 114


>gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36]
 gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36]
          Length = 841

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 128/371 (34%), Gaps = 34/371 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +      I+ + +DSR +      +F A+   + DG  +I    A+G 
Sbjct: 5   IESITESIGARRVGNVPATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIADLYARGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN-------------TPILVVDNTRKFLSLFASRLYGKHP 114
              ++   ++ L +       N                L+V N  K L   A +   +  
Sbjct: 65  RNFVLSEESFRLIEHGELKIDNDAQQPAIHFQSSTVNYLIVSNPLKALQKLAEQHRNRFQ 124

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  ++     
Sbjct: 125 IPVIGITGSNGKTVVKEWLHQLLSPERAI--------IRSPRSYNSQIGVPLSVWQMNEQ 176

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S L+           S  G  +   + IK   G  TN+G  H +   + Q     K+ LF
Sbjct: 177 SELAIFEA-----GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLMLF 231

Query: 235 EELLPKESPAIIYADDAYS-KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +         I   DD +    V K   +A     S     + +++ KV    +   ++ 
Sbjct: 232 K----NCDVVIYNGDDEFVSNCVAKSMLSAREIAWSRKDMERPLYISKVEKQDDCTVISY 287

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D  F  P   +  + N+L     C+ + + +  + E + KL  +  R E     +
Sbjct: 288 RYLDMDNTFTLPFIDDASIENSLNCLAACLYLMLPAERITERMAKLEPIAMRLEVKEGKN 347

Query: 354 RGGRIYVDYAH 364
               I   Y  
Sbjct: 348 NCLLINDSYNS 358


>gi|325959935|ref|YP_004291401.1| Mur ligase middle domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331367|gb|ADZ10429.1| Mur ligase middle domain protein [Methanobacterium sp. AL-21]
          Length = 486

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 63/427 (14%), Positives = 144/427 (33%), Gaps = 28/427 (6%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
           +  A  +G   +V  +             + P+++        +        K       
Sbjct: 50  VEIARNRGVSCVVTQNP-KGDAVKTAQELDFPLIITPKIELANAFALRWSIEKFAPGSIR 108

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----RLTTPSPIYLAKA 173
           + VTGT+GKS+    +Q I   +G + +    + +  +   D     +++          
Sbjct: 109 VVVTGTNGKSTTTHMIQNILNHAGYNCYTNTDSKSEFNTLIDPVVSDQISRFKAKTKKPI 168

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--M 231
            + +         ++           D +K      TN+  DHI    + +  +      
Sbjct: 169 DAMVVEVSEVQGWMDKLMKDHAYLMTDAVKPDVLVLTNITMDHIGLINSIEETYAEIYGA 228

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
               E   + + A++  DD   +++          +     +  F     V +     + 
Sbjct: 229 LAAVEKSCQNNYAVLNYDDPLLRKMAGEIVTCPSIISHGSVEPDFNPDLTVKSDGIHHED 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            + ++ +D  F      +    N + A G C+A+ ID++ +   +     +  RF  +  
Sbjct: 289 ELFLKMEDLPFKSKHFLQ----NTMAAIGACLALNIDTSAIKAGILSYSPLNRRFSIL-- 342

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI---ALD 408
             +   I  D+AH  + +   +K+   ++ G +I++F   G R +    +  +    AL 
Sbjct: 343 -YQEPLIIDDFAHNPDGITATIKSASEMSEGTLIILFAVRGSRGEVINRLNAEALASALQ 401

Query: 409 LADI-AIVTD-----DNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             D   I+T      D   +    +I   R  +         K    +A+   +    K+
Sbjct: 402 AVDYSLIITSSSEVVDELNTVHASEIEVVRKVMDEHKLEHTFKEELEDALNYTLNTAKKE 461

Query: 460 DVLVVAG 466
           D +++ G
Sbjct: 462 DTILLIG 468


>gi|149182972|ref|ZP_01861428.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. SG-1]
 gi|148849309|gb|EDL63503.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. SG-1]
          Length = 876

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 132/390 (33%), Gaps = 23/390 (5%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+      + L+ K  E  + +   +G +   +  + +      S   +G T++   +  
Sbjct: 462 REAGKEIVNYLFTKRSEAAIPIISVTGTNGKTTTTRLVKHLLEGSGMTVGMTNSDGVYIG 521

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
             ++ +        A   L +       +E +  G+ +  L       G  TN+  DH+ 
Sbjct: 522 AKQVDSGDCSGPISARKVLRNPQTDIAVLETARGGILREGLAFRYCDVGIVTNVSEDHLG 581

Query: 219 -YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV------------MKRAHNAGC 265
                         RL  E++ ++   I+ ADD  +  +            +  ++    
Sbjct: 582 LDGIETYEQLVKLKRLIPEVVHEKGFCILNADDESTVNMATHTKGTVIYTSLNESNPYIE 641

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + ++      +++       HN+      +  ++         +  V N L A     + 
Sbjct: 642 KAVAERGTAWYVNEDGCIIFHNRGTSHTFLPIREVPITINGTAKHNVSNLLQALAAAHSQ 701

Query: 326 GIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           GI    + E     +      R  F  T  +G  I +DYAH    L+ I   +  I   R
Sbjct: 702 GISLEELKERALTFNPDAKHSRGRFNRTRVQGKEIIIDYAHNQAGLKAIYDAVEHIERNR 761

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPR----SEDPEKIRAEIIHGI-- 436
            I V    GDR       M +IA   +D  I+ +D + R     E P  +  E       
Sbjct: 762 TITVISAAGDRQDSAIRQMARIASANSDHLIIKEDKDLRGRMTGEVPMLMMEEAETYYRT 821

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   +  +A + A +  N+ D+L+  
Sbjct: 822 SDYSTIIIDEEQAYQYAWDHSNEGDLLLFL 851


>gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
          Length = 835

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 117/368 (31%), Gaps = 25/368 (6%)

Query: 9   KDFPELINQLSIFPMQWRE-RKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIA 65
                ++  L        + R I  + +DSR + +    +F A+     DGH +IPQ   
Sbjct: 2   STLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLYE 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G  A  +       +       +  I+ V  T + L   AS    ++   ++ +TG++G
Sbjct: 62  HGVRAFFI---CEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++  +                 S  + +++L  P  I     +    +  +   
Sbjct: 119 KTVVKEYLYHLLSGCYRIV--------RSPKSYNSQLGVPLSI---LNMEEEYTLAIFEA 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +      L   R+  I+   G  TN+G  H +   +       K++LF   +  +    
Sbjct: 168 GISMPMEMLRLQRI--IRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHFVY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D   + +     +      S+     + H+    +      +T     +      P
Sbjct: 223 DADSDEIQRGIDNLGLSDKAIGWSLTPGKAYYHVSYSHSGDCTTTITAQHADESSTVTIP 282

Query: 306 LPGE---FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +       + L   GL          VL     L  +  R E     +    I   Y
Sbjct: 283 FADQASIQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAY 342

Query: 363 AHTSNSLE 370
            +  NSL 
Sbjct: 343 NNDINSLR 350


>gi|251772195|gb|EES52765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 467

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 11/98 (11%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           +DSR I +G +FVA+ G + DGH  + QA A+G    VV               N P +V
Sbjct: 34  TDSRTILSGNVFVALRGLRTDGHDHLEQAAARGTTLAVVERGIP--------GVNIPQIV 85

Query: 95  VDNTRKFLSLFASRL---YGKHPENILAVTGTSGKSSV 129
           V++T   L    + +   + +    ++++TG+ GK++ 
Sbjct: 86  VEDTLVALRKMGALVLAAHRRAGHRLISLTGSVGKTTT 123


>gi|119953103|ref|YP_945312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
 gi|119861874|gb|AAX17642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
          Length = 464

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/399 (15%), Positives = 124/399 (31%), Gaps = 31/399 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEV-SSDSRHIQAG----WIFVAIVGNKEDG 56
           K++D++     + +  +         +KI    S DSR I A      ++ A  G++ DG
Sbjct: 5   KIEDIL-----DSLKDIKFVGYASSMQKIVSFYSLDSREINAKNSSASLYFAYKGDRVDG 59

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +  V S               N   L+  N    L   A+    +   
Sbjct: 60  FSFVEYLIDIGVKCFVCSKDCESLCLEYLNRDENLVFLLTSNVVILLQNLAAHFITRTSF 119

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG++GK++    +  I      +    G  ++          T            
Sbjct: 120 KRIAITGSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTEGD--------- 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +      V  S  G      + +       TN+   H+   +  +     K ++  
Sbjct: 171 ----EEYAVFEVGISYIGEMNLLAEILNPEIVIVTNISYAHMQAFEDLEIVTAEKGKIMT 226

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +         +  +++    +  R            +   F  L+         +     
Sbjct: 227 KSTQM-----VILNESCPYHLHLRVMAKSINPGINIFYFDFHSLQIRSFAFVNDKFFYDF 281

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K FD+   LPG+  ++NA+    L + +G+    +   L       GR E +      
Sbjct: 282 TYKGFDYSILLPGQHNIFNAISCIHLALLLGLSENEIRNGLLHADFQKGRAELLRVKDY- 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGD 393
             +   Y     S   + + I  +   G+  ++ G   +
Sbjct: 341 LILNDSYNGNLGSFMALKEMILGLEIKGKKFIILGAFKE 379


>gi|322436309|ref|YP_004218521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
 gi|321164036|gb|ADW69741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
          Length = 456

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 169/479 (35%), Gaps = 45/479 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MKL         ++ + +          +    S DSR I AG +F A+ G++ DGH ++
Sbjct: 1   MKL------TLGQVADWIHAEGDFTTSSEAVGYSIDSRTIGAGELFFAVTGDRVDGHDYV 54

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPEN 116
             A+A GA A VVS+ +   D    +     +L V        + + L A R+       
Sbjct: 55  EAALANGAVAAVVSNRWLASDEPREVDP-CKLLWVPEGEECVLRAMQLLALRVRQSWGGR 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ VTG++GK++    V  +           G  +               P+ L +  + 
Sbjct: 114 VIGVTGSAGKTTTKEMVATVLSSQFSVLKSAGNLNNHFGV----------PLQLLRLEAE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                V  + +  +  G +  RL  I +   G  +N+   H+++     A   A  R   
Sbjct: 164 ---HEVAVIEMGMNHSG-EIKRLAEIAEPQWGVVSNVAAVHLEFFPAGIAGIAAAKRELI 219

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E LP +  AI+  DD + +            +  +G + +      V A  +    T+  
Sbjct: 220 EALPSDGLAILNGDDEWVRGF---GVGVDSVLYGLGDEAQVRATNVVEAGLDGVSFTVHA 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
            G   +    L G+  V NAL A  +    G+        L ++     R   +      
Sbjct: 277 GGDTAEVHLALLGKHNVSNALAAIAVGWKSGMTLTACAAALAEMRATDKRGAVIEWRGAK 336

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMG-KIALDLAD 411
             +   Y     +L+ ++  + +  + R IVV G     G          G ++A    D
Sbjct: 337 -LLNDSYNSNPKALDAMVDALISTPATRRIVVAGEMLELGPEGPALHKACGRRMAEQGVD 395

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           + +             + A+++ G     +       A       +   DV+++ A +G
Sbjct: 396 LIV---------GVRGLAADLVSGAGEKAVFVETPEAAGNWLTANVKAGDVVLLKASRG 445


>gi|259416006|ref|ZP_05739926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
 gi|259347445|gb|EEW59222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
          Length = 463

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 118/345 (34%), Gaps = 22/345 (6%)

Query: 26  RERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
            +  ++ +S D+R +  G +FVA+   + DGH F+ Q           + A  +      
Sbjct: 19  SDWAVDGISIDTRTLAPGDLFVALKAAR-DGHDFVAQ------ALAKGAGAALVSHIPEG 71

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
           +   +P+LVVD+ +  L         +    ++AVTG+ GK+S    +  +    G +  
Sbjct: 72  VAEGSPLLVVDDVQAALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLAPQGRTHA 131

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +   +               P+ LA+  +         + +  +  G         +  
Sbjct: 132 AVASYNNHWGV----------PLTLARMPAD---TEFAVIELGMNHPGEIAPLSRQARPH 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               T +   H++  +        K     E L     A++ AD   +  +   A  AG 
Sbjct: 179 VALVTTVAAVHLEAFEDVAGIAREKA-AIIEGLEPGGVAVLNADLDETPVLRAVAEAAGI 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                G       LK      +  +  +S+ G+D        G     NA  A    +A+
Sbjct: 238 ETRWFGQSADAYRLKDAELDGDITRAHLSLAGRDVTADIQSLGTHFAMNATGALASVLAL 297

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTN-SRGGRIYVDYAHTSNSL 369
           G D  L L  L     V GR      +   G    +D A+ +N  
Sbjct: 298 GGDLDLALAGLAGWSPVKGRGARFTVDLPSGSVTVLDDAYNANPT 342


>gi|125717546|ref|YP_001034679.1| D-Ala-D-Ala adding enzyme [Streptococcus sanguinis SK36]
 gi|125497463|gb|ABN44129.1| D-Ala-D-Ala adding enzyme, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 81/484 (16%), Positives = 152/484 (31%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI              +  +    S    +    ++VD+        A     K   ++L
Sbjct: 54  FIAT----------AFAQGAAATLSERPVAEGAYILVDDVLTAFQRLAQYYLQKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSNLAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADAKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|46199022|ref|YP_004689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
 gi|46196646|gb|AAS81062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
          Length = 438

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 73/459 (15%), Positives = 135/459 (29%), Gaps = 58/459 (12%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L  +     +    + P       + ++   S     G +F A+ G    G  FIP+A
Sbjct: 15  RELTPEWVARAVGG-RLHPGGGP---VRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEA 70

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A+GA  ++   A                L V++  + L      L    P  +LAV G+
Sbjct: 71  LARGASLVLADQAGPAT------------LEVEDPWQALLRLGEALRRLFPGPVLAVGGS 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++    + Q                              +P  +             
Sbjct: 119 SGKTTTKEALAQGLGLPAPPGNLNT-----------------APPLVRFFWHLDPQSPGA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G         K      T LG +H++   T +     +  L    L   + 
Sbjct: 162 VVELGVDRQGEMAELFALAKPHLAVLTALGEEHLEAFGTLEKAVQEEAHL----LRAPTA 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +          + +     G    +   +   + L++                      
Sbjct: 218 LVGEQAAPLVLGLREDLLVYGFAEGTFRGRDLELGLRESRF-----------RYGGLHVR 266

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P PG    Y AL A      +G+    V E L +L + PGR E          +   Y 
Sbjct: 267 VPYPGLGPAYGALAALAAAEVLGLSLEEVAERLSRLTLPPGRMETREVGGV-VFVNDAYN 325

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               S++  L+ +     GR   V G   +  +    +  ++A + A +      +P   
Sbjct: 326 ANPLSVKAGLRWLAA-QPGRKWAVLGEMRELGRESLRLHLEVAEEAARL----GLSPLYL 380

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            P         G        +  EA+      +   D++
Sbjct: 381 GPHARHQAAFSG----EAVESLEEALAWLKARVAPGDLV 415


>gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 483

 Score = 84.6 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 140/448 (31%), Gaps = 35/448 (7%)

Query: 29  KINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
            I+ ++ DSR  + G +FVA+ G + DGH F+             + A +    +  I  
Sbjct: 28  PIDHITMDSRMCRKGSLFVALPGAQADGHDFL--------AKAANADASAALVTTPDISI 79

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               ++V +    L+  A     +    ++A+TG+ GK+     +  + +  G S    G
Sbjct: 80  ELAQIIVPDCLAALTALAVAGRNRFKGAMIAITGSVGKTGTKEMLAHLLRACGQSHANEG 139

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +               P+ LA   +             A        R+   +     
Sbjct: 140 NFNNH----------IGLPLSLAALPAGSQFAIQEIGMNHAGEIA-KLTRIA--RPDIAM 186

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   H  + ++  A  NAK  +FE +    +   I            ++      V 
Sbjct: 187 ITRIAAVHSGHFESIDAIANAKAEIFEGMHGGTAVLNIDDPFFPHLSQAAKSAGISRIVT 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              +      L      ++  ++   + G    F   + G+    N+L       A+G D
Sbjct: 247 FGSHSDAEFCLLSSRQDNDGMKIEADLSGVPVSFHLGMSGQHWAMNSLGVLACVHALGED 306

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGG-RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                + L     + GR         G     +D ++ ++   M       +T  R   +
Sbjct: 307 PVAASDSLASFGDIAGRGACHNGIFNGHAISVIDDSYNASPASMSAALAPFLTGARHTDI 366

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIA-IVTDDNPR-----SEDPEKIRAEIIHGIPGFIE 441
                  + G        A    DI   V    PR      +D     A++ H     I 
Sbjct: 367 MVLSDMLELGSHS-----AAAHDDIVATVASIGPRHVIAIGDDFAHAFAKVAHDCD-VII 420

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
             +   A      ++   D + + G KG
Sbjct: 421 ANDPAHATDMLARLVQADDTIFIKGSKG 448


>gi|55981048|ref|YP_144345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
 gi|55772461|dbj|BAD70902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
          Length = 438

 Score = 84.6 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 73/459 (15%), Positives = 135/459 (29%), Gaps = 58/459 (12%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           ++L  +     +    + P       + ++   S     G +F A+ G    G  FIP+A
Sbjct: 15  RELTPEWVARAVGG-RLHPGGGP---VRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEA 70

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +A+GA  ++   A                L V++  + L      L    P  +LAV G+
Sbjct: 71  LARGASLVLADQAGPAT------------LEVEDPWQALLRLGEALRRLFPGPVLAVGGS 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++    + Q                              +P  +             
Sbjct: 119 SGKTTTKEALAQGLGLPAPPGNLNT-----------------APPLVRFFWHLDPQSPGA 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V +     G         K      T LG +H++   T +     +  L    L   + 
Sbjct: 162 VVELGVDRQGEMAELFALAKPHLAVLTALGEEHLEAFGTLEKAVQEEAHL----LRAPTA 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +          + +     G    +   +   + L++                      
Sbjct: 218 LVGEQAAPLVLGLREDLLVYGFAEGTFRGRDLELGLRESRF-----------RYGGLHVR 266

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P PG    Y AL A      +G+    V E L +L + PGR E          +   Y 
Sbjct: 267 VPYPGLGPAYGALAALAAAEVLGLSLEEVAERLARLTLPPGRMETREVGGV-VFVNDAYN 325

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               S++  L+ +     GR   V G   +  +    +  ++A + A +      +P   
Sbjct: 326 ANPLSVKAGLRWLAA-QPGRKWAVLGEMRELGRESLRLHLEVAEEAARL----GLSPLYL 380

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            P         G        +  EA+      +   D++
Sbjct: 381 GPHARHQAAFSG----EAVESLEEALAWLKARVAPGDLV 415


>gi|119484349|ref|ZP_01618966.1| cyanophycin synthetase [Lyngbya sp. PCC 8106]
 gi|119457823|gb|EAW38946.1| cyanophycin synthetase [Lyngbya sp. PCC 8106]
          Length = 868

 Score = 84.6 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 110/350 (31%), Gaps = 25/350 (7%)

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                +   IG T+T  ++  D  L +        A   L+   V    +E +  G+ + 
Sbjct: 508 HIFKQTKQVIGYTTTDGTYIGDFLLESGDNTGRQSAQLILNDPTVEVAVLETARGGILRS 567

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            L   +   G   N+  DH+           A+++        +    +   D      M
Sbjct: 568 GLGFNRCDVGVVLNVAADHLGLEDINTLEDMAQVKTVVAEATDDKGYAVLNADDPLVADM 627

Query: 258 KRAHNAGCRVLSVGYQGKFIHLK------------KVCAIHNKQQVTISVEGKDFDFLFP 305
            +         S+      +                     N Q      +  +      
Sbjct: 628 AKWVKGKVAYFSINPHNPIVQEHLRKGGIAAIYDGDFLTFCNGQDTLQVEQMVNVPSTLR 687

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVD 361
               F + N L A+      G+    +   L          PGR            + +D
Sbjct: 688 GLVSFMIANVLAASLAAYVQGVSIENISTGLRTFQASLEHTPGRMNL--IELGKFHVLID 745

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-----T 416
           YAH     + I + +   + G  I V G  GDR       +G+++  + D  I+     T
Sbjct: 746 YAHNPAGYKAIGEFVCQWSEGERIGVIGGPGDRRDQDLKELGRLSTQMFDWVIIKEDDNT 805

Query: 417 DDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D PR E    IR  I    P   + E  +  EAI++A+   ++  ++V+
Sbjct: 806 RDRPRGEAASLIREGICQEKPQFNYQEIWDETEAIQSALASASEGSLVVI 855


>gi|150389045|ref|YP_001319094.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149948907|gb|ABR47435.1| cyanophycin synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 887

 Score = 84.6 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 119/343 (34%), Gaps = 26/343 (7%)

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
            +G TST   + QD  +          A S L    V    +E +  GL    L      
Sbjct: 508 VVGMTSTGGIYVQDELICGGDATGPRSAESILLDNRVEVAVLETARGGLINKGLAYDLAD 567

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
            G  TN+G DH+           A    L  E +  +  AI+ A+D + + + +R     
Sbjct: 568 IGIITNIGNDHLGMDGVNTLEEMADVKALVTEAIRPQGYAILNAEDKFVERIAQRITCQI 627

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----------EGKDFDFLFPLPGEFQVY 313
                                    +  I               ++    +       + 
Sbjct: 628 LYFAKDMNNKVIKDHVNRGEKAVYIKDDIIQVFDGEKEKPVIHVENIPATYGGVLIHNIE 687

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           N+L A       GI + ++ + L +        PGRF          R+ +DY H  +  
Sbjct: 688 NSLAAVAAAFGHGIKTDVIAKGLSQFQTDASTNPGRFNI--FEMEKCRVVIDYGHNIDGY 745

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI 428
           + +L+ ++ +   R+I V G  GDR       +G+I+    D   + +D + R  +P ++
Sbjct: 746 QKVLEGLKLMKKNRLIGVIGVPGDRTDISTLKIGEISGKHFDHVYIKEDKDLRGRNPGEV 805

Query: 429 RAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  G             +   I+A++ A+E   + D+++V
Sbjct: 806 ANLMKKGCALGGLKEEEIQIEHCEIKALQKALESAQQGDIIIV 848


>gi|147678195|ref|YP_001212410.1| UDP-N-acetylmuramate--L-alanine ligase [Pelotomaculum
           thermopropionicum SI]
 gi|189029016|sp|A5D144|MURC_PELTS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146274292|dbj|BAF60041.1| UDP-N-acetylmuramate-alanine ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 461

 Score = 84.6 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 141/411 (34%), Gaps = 43/411 (10%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V S+A    +       +   P++   +   +L            +  +AV G  G
Sbjct: 64  ADLVVASTAIPPDNIELVEARKRGLPVMHRADLLAWLMR---------RQKGIAVAGAHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    + +++G+    +     +S    + +L     +      S  S       
Sbjct: 115 KTTTTSMTALVLEKNGMDPTIV-IGGELSEIGGNAKLGRGEYLVAEADESDGSFLK---- 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH+DY+++ +    A  R F   +P+   A+
Sbjct: 170 ----------------LDPVIEIITNIEDDHLDYYRSVENIL-AAFRRFMAKVPESGLAV 212

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD   +E++               +  +                    G        
Sbjct: 213 ACLDDPRLRELLAGYDRPCLTYALDNPEADYTMRNIRLMRQVTAGDVYYRGGFLGCLELS 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NA+ A  +   +G+    +   L+       RF+  G    G ++  DYAH 
Sbjct: 273 VPGRHNLSNAMAAVAVGRFVGLAFEGIAAALKDFRGAGRRFQLTG-EVNGIKVIDDYAHH 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + ++  LK    + +GR++ VF      R        G+ A + AD+ I++D     E 
Sbjct: 332 PSEIKATLKAAGQVKTGRVVGVFQPHRYTRTLFLGERFGE-AFEDADVVIISDIYSAGEK 390

Query: 425 P------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P      + I + I        I    R E +   ++M    D+++  G G
Sbjct: 391 PIEGVSAKTIVSAIEKHNGRKVIYLPTRQEIVDYLVQMARPGDMILTMGAG 441


>gi|2073484|emb|CAA72472.1| UDP-MurNAc-pentapeptide synthetase [Rickettsia prowazekii]
          Length = 96

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           NEV  +S+ ++ G +F+A+ GN+ DGH +I  AI +GA A++VS    + D         
Sbjct: 23  NEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDAIDKGATAVIVSKQVEINDKDK------ 75

Query: 91  PILVVDNTRKFLSLFA 106
            I++V+N+ + L   A
Sbjct: 76  -IILVNNSFEALQKMA 90


>gi|15679903|ref|NP_275877.1| UDP-MurNac-tripeptide synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|7482867|pir||B69198 UDP-N-acetylmuramyl tripeptide synthetase related protein -
           Methanobacterium thermoautotrophicum (strain Delta H)
          Length = 450

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 141/433 (32%), Gaps = 52/433 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENI 117
           I  A  +G  AI+       +          P+++VD      +L  S    +       
Sbjct: 28  IEIASERGVSAIITQ-DLRGKSSRLAEEHGLPVILVDRIENANALALSWTIERFAPSSRR 86

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTGT+GKS+    +  I + +G SS+        ++ ++    T   P+   +     
Sbjct: 87  VVVTGTNGKSTTTHMIHHIIETTGASSYT-------NTDSRSEFNTLIDPVVSQQIAEAS 139

Query: 178 SSQGVTHVSVEASSHGLDQHRLD---------GIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           S      + +E S       R+           I       TN+  DHI   ++ +  F 
Sbjct: 140 SDGAPEFMVIEVSEVQGWLGRVMRDHARMMTAAIGPEVVVITNVAMDHIGLVESVEDVFR 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                      +   A++ ADD   + +                     +       ++ 
Sbjct: 200 EVAGALR--AIESGVAVLNADDERVRAMA----------HVNPGLSVVFYGSDSPVRYDG 247

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + + I  +        P   E  + N L AA  C+ +G     +   ++    +  RF  
Sbjct: 248 EGIHIGGDLIIPAEELPFRSEHFIQNTLAAAAACLELGFSPEDIRMGVKTYRPLKRRFSV 307

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           + T      +  D+AH  + +   +++      GR+ VV    G R +    +    A  
Sbjct: 308 LMTEPL---VIDDFAHNPSGIRFTVRSAAANLRGRLWVVNAIRGSRGEDINVM---NAAA 361

Query: 409 LAD-------IAIVTDDNPRSEDPEKIRAEIIHGI--------PGFIEKGNRIEAIRTAI 453
           LAD         IVT  +   ++  ++                  +I      +A+R  +
Sbjct: 362 LADSLRGLNAELIVTSSSDVVDEQNRVLENERRAFLGVLDERGASYIHVEKLRDALRMVL 421

Query: 454 EMLNKQDVLVVAG 466
           +     D +++ G
Sbjct: 422 DAAKPHDTILLLG 434


>gi|148273044|ref|YP_001222605.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830974|emb|CAN01919.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 469

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 158/473 (33%), Gaps = 42/473 (8%)

Query: 6   LIYKDFPELINQLSIFPMQW-RERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L   +  E ++   +       +  ++ V  +DSR I  G IFVA  G + DGHLF P A
Sbjct: 4   LTLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIARGGIFVAKPGEETDGHLFAPAA 63

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE----NILA 119
           +  GA  ++V     L           P ++V +    L   A  +  +        ++A
Sbjct: 64  VEAGAALLLVERELDLP---------VPQVLVPDVVDALGRLAHEVVARVRALGDLRMVA 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG++GK++  + +  I    G +   +   +            T              +
Sbjct: 115 VTGSNGKTTTKNLLHAILSTQGETVSPVASFNNEVGAPLTMLKVT-------------RT 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  + AS  G +  RL  +                                 + L 
Sbjct: 162 TRFLVAEMGASGLG-EITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLL 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
            E  A++ ADD     +  +                 +    + A       T+ +    
Sbjct: 221 PEDTAVLNADDPRVSSMSDKTEAPVLWFGRDARAA--VRATDIVASAAGTTFTLHLPDGS 278

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGR 357
           +    F + GE  V NAL AA    A+G+D   ++  L+ +      R E +G N     
Sbjct: 279 ERPVSFRVLGEHHVTNALAAAAGAWALGVDGDAIVSALQTVQRAERWRMEVLGGNGV-TI 337

Query: 358 IYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLAD- 411
           I   Y  + +S+   L+ +  I     R + V G     G+  + +   +G +A+ L   
Sbjct: 338 INDAYNASPDSMAAALRTLAQIRGPEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIG 397

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +V     R    E I      G    I   +  EA      +L   D+++V
Sbjct: 398 QLVVVGRPARRLHLEAIAQGSWDG--ESIFAEDAAEAREILDRILRDGDLVLV 448


>gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
 gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
          Length = 833

 Score = 84.2 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 137/414 (33%), Gaps = 26/414 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQA 63
           L+ K    +I Q ++      ++ +  +  DSR +   +  ++ AI G   +GH F+ + 
Sbjct: 2   LVIKQIVPII-QATLVQQTQSDQAVYHLLLDSRKLYNPSQALYFAINGEHHNGHEFVAEL 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            A+G    V+               N  IL V +    L   A+    ++   ++ VTG+
Sbjct: 61  YARGVRNFVIEENLPAH----VKLPNANILKVTSAVNALQQVAAAHRNQYQIPVIGVTGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK+ V  ++ ++              ++           T  P+ + +     +     
Sbjct: 117 NGKTMVKEWLAKLLAEDFKVVKSPKSYNSQ----------TGVPLSVWQMNKRHTMGIFE 166

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 +     Q     I+   G FTNLG  H +    +   F  K +LFE        
Sbjct: 167 AGISAKNEMTALQKV---IQPSIGIFTNLGTAHDEGFDNRTQKFAEKWKLFEHCKAVVCC 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISVEGKDFD 301
           A          +++ +   +G        +   + L          + Q+ +  +G++  
Sbjct: 224 AEHLQT---YHDIVTKTSFSGQPFTWGKNEQAQLRLLDKQTHLTQQQTQLKVQYQGENHF 280

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P   E  V N L        +G+    +   + +L  V  R E          I   
Sbjct: 281 IQAPFIDEASVENILHCVATMCLLGLSFDKIQRRIARLRPVSMRLELKRGMRNTYLIDDS 340

Query: 362 YAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
           Y +    L++ L  + T     + IVV             +   IA  L   AI
Sbjct: 341 YNNDLAGLKIALDFMSTQDVNLQKIVVLSDMLQSGLPPEKLYQAIAQLLQSKAI 394


>gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
 gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
          Length = 815

 Score = 84.2 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 142/408 (34%), Gaps = 32/408 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +    +   +      I  ++ DSR I       F+AI  +K  G  FI  A+ +G + I
Sbjct: 8   IAEITNAQIIGDGNLLIKNIAYDSRIIYSIKNTAFIAINTHKNSGEKFIESAMDRGIKVI 67

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +    Y   +       N   ++V+N+  FL   A   +       + +TG++GK+ +  
Sbjct: 68  ISEHHYPEFE-------NITWIIVENSVAFLQKLAKYHFENSHLQSIGITGSNGKTILKE 120

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           ++ Q       +          S  + ++++  P  + L    S+        +     S
Sbjct: 121 WLYQCLWNEFPTV--------KSPKSFNSQIGLPLSL-LQINDSHQLGIFEVGI-----S 166

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
              +  +L+ I                 + + +     ++   +  L K S  IIY  D 
Sbjct: 167 KPHEMEKLENIFHPQIGLLTHIGTAHAANFSSE----EELIDEKIRLFKNSEVIIYNGDN 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              +   +   +  ++++ G++ +     K       + + +   G++  F      E  
Sbjct: 223 DLVDQKIKNSYSDKKLIAYGFKKENQVFIKSNISK-DENIIVEYFGEEISFPAHQRDEAT 281

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NA+    +   + I++  ++E +  L  V  R E +  N     I   +    +SL+ 
Sbjct: 282 LTNAMALITVLKELNIENKKIVEKINLLKAVEMRLEAIEGNKGNIVINDSFNLDLDSLKT 341

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAIV 415
            L+ +      +  +V           + +  ++A        D   +
Sbjct: 342 ALQFLNEYNKAKKSLVLTDIVGVSTNAKELYEEVAELVNDQNFDSVFL 389


>gi|195953735|ref|YP_002122025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933347|gb|ACG58047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 446

 Score = 84.2 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 125/395 (31%), Gaps = 35/395 (8%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           E+   L +         I +V  DSR      +FVAI G K DGHL+I   + +     +
Sbjct: 5   EVSKSLGLIHEGKP-FFIKDVFFDSRESIKDALFVAIKGEKTDGHLYIKNLLDENIAGFL 63

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V   +  ++    +      L   +T K L   AS        N++A+ G++GK++    
Sbjct: 64  VREDFDCKEI---LAKGKSCLKAKDTIKALQDIASLKRNSLKANVVAIAGSAGKTTTKEL 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  +       +              ++++  P  +         +   + ++ +E  + 
Sbjct: 121 IAHVLPGKVHKT----------YKNFNSQIGLPKVV-------ITADDDIGYLVLEMGAT 163

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L+              TN+ + HI    +            E ++         + +  
Sbjct: 164 ALE---------DVKKLTNIAKQHIGVISSIGEEHLESFGSIENVVKGNFEVF-DSPNLL 213

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S    K  H+   +   + +                 +     E        P+      
Sbjct: 214 SGVYPKAFHSFYKKEYGLSFCRFRDDADIRVKNVYIDEEGTHFEIMGIRLTIPVLSIGIA 273

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            +A  A G+  + GID   + +  E    V GR + +        I   Y     S++  
Sbjct: 274 ESAAAAVGVLASFGIDWKELKDRFESFKGVQGRMQLIKKGPF-RIIDDTYNANPVSVKNA 332

Query: 373 LKNIRTITSGRIIVVFGC---GGDRDQGKRPIMGK 404
           +  I +      I+V G     G+  +     +G 
Sbjct: 333 ILTIDSFKDFNKIIVLGDMLEMGEYSKALHEKVGA 367


>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
 gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
          Length = 845

 Score = 84.2 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 88/466 (18%), Positives = 157/466 (33%), Gaps = 33/466 (7%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +L+   +            + S DSR    G  FVA+   + DGH +IP AIA GA 
Sbjct: 3   TLDDLLAAGARLHGPAHATSFTDWSYDSRLTAPGECFVALRTPRADGHDYIPAAIAAGAT 62

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ S       +     + T +L+ D+ +  L  +AS         ++ +TG+ GK++ 
Sbjct: 63  GILCS-------WPPADSAGTTVLLCDDPQTTLLRWASARLAAVQPTVVDITGSVGKTTA 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 +  R   +       ++               + L  A++ L  Q    V    
Sbjct: 116 RRAAAAVLARRAATFQSRRSFNSF--------------LGLPIAIARLEDQHRFAVLELG 161

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S H  +  RL        +                    A+       LP +  AII  D
Sbjct: 162 SDHRGEIARLATFFPPKIALVTAVEAAHLRSFGSLEAIAAEKGDLLAALPPKGVAIINGD 221

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              ++ +M R                      +    +   + +   G + D   PL G 
Sbjct: 222 SPLARALMGRTKAHTITYGQGRSCDLSGR--GLRYGLDGTLLRLRWCGTEVDVHTPLIGI 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             +Y AL    + +A G+D    +  L  +  V GR   +        +   ++    + 
Sbjct: 280 PGLYAALAGVAVGLACGMDLVDCVAALPHIVPVAGRLRPLPALGGAALLDDSFSAAPPAA 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              L+ +  + + R I V G   D     ++     +G  A    D+ I+  D       
Sbjct: 340 LAALETLAALPAHRRIAVVGALSDLPVGSEESFYRELGTRAASSTDLLILKGDW--GVVT 397

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHE 470
           E+   +I   I   ++  +  EA   A+   L   D+++V G G E
Sbjct: 398 ERAARQINPNI--AVQVVDTNEAALAALPPDLGPGDLVLVKG-GAE 440


>gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
 gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score = 84.2 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 129/374 (34%), Gaps = 36/374 (9%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQG 67
              ++   +    +  R   I+ + +DSR +      +F A+   + DG  +I    A+G
Sbjct: 4   TIEDIARIIGARRIGDRPAAIDWLLTDSRSLSFPEETLFFALPTKRNDGTRYIRDLYARG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPI----------------LVVDNTRKFLSLFASRLYG 111
               VVS     +      +    +                LVV N  K L   A +   
Sbjct: 64  VRNFVVSEERLNEVGIGEPKVEDAVRQETVDTAAMQPAFNLLVVPNPLKALQKLAEQHRD 123

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ +TG++GK+ V  ++ Q+     + +         S  + ++++  P  +   
Sbjct: 124 RFQIPVIGITGSNGKTIVKEWLHQLLSPERMIT--------RSPRSYNSQIGVPLSV--- 172

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                     +  +    S  G  +   + IK   G  TN+G  H +   + Q     K+
Sbjct: 173 --WQMSEQTELAILEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKL 230

Query: 232 RLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            LF+         I   DD + +  V K    A     S     + +++ KV    +   
Sbjct: 231 ALFK----NCDVVIYNGDDEFINNCVGKSMLAAREIAWSRKDMERPLYISKVEKQEDSTV 286

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++      D  F  P   +  + N+L     C+ + + +  + E + KL  V  R E   
Sbjct: 287 ISYRYLDMDNTFTLPFIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPVAMRLEVKE 346

Query: 351 TNSRGGRIYVDYAH 364
             +    I   Y  
Sbjct: 347 GKNGCLLINDSYNS 360


>gi|327489499|gb|EGF21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1058]
          Length = 456

 Score = 84.2 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 82/481 (17%), Positives = 153/481 (31%), Gaps = 55/481 (11%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I+   +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI              +  +    S    +  P L+VD+        A     K   ++L
Sbjct: 54  FIAT----------AFAHGAAATLSDHPVAEGPYLLVDDVLTAFQCLAQYYLEKRQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +   +            G    +   C    K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADYKLV-------RFGPDADIFLTCLEERKDSLSFDCNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EKRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI---EAIRTAIEM-LNKQDVLVVAGK 467
           TD     +D E +     EI   G   +  K +     E ++ A+   L   D +++  K
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLKQAVREKLTPADQILL--K 438

Query: 468 G 468
           G
Sbjct: 439 G 439


>gi|71281643|ref|YP_268601.1| cyanophycin synthetase [Colwellia psychrerythraea 34H]
 gi|71147383|gb|AAZ27856.1| cyanophycin synthetase [Colwellia psychrerythraea 34H]
          Length = 939

 Score = 84.2 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 129/399 (32%), Gaps = 49/399 (12%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TGT+GK++ +  +  I + +G                   +     P+     L    
Sbjct: 500 GITGTNGKTTTSRMLAHILKSAGHVVGMTSTDGVYVDGQLSVKGDMTGPVSSQIVLRDP- 558

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              V    +E +  G+ +  L   +    +  N+  DH+           A+++     +
Sbjct: 559 --SVDIAVLETARGGIARSGLGYNECDVAACINVQEDHLGLRGIDTLDQLAEVKRIVVEV 616

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEG 297
            K+S  +  ADD    ++ +         +++           +        +  I+ + 
Sbjct: 617 AKDSVVL-NADDPQCLKMAEHTKAKHLCYVTMNTGHSLVREHIRAGGRAVVLEKGINGDM 675

Query: 298 KDFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLE----HLEK 338
                          +               NA+ AA L   +      + +        
Sbjct: 676 ITIFDNGTHIPLLWTHLIPATLEGKALHNVQNAMFAAALAYCLDKPLEAIQQGLRTFTTT 735

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGDRDQG 397
            +  PGR      +    R+ +DYAH ++ +  + +   +    G+ I V    GDR   
Sbjct: 736 FYQAPGRMNV--FDEHHFRVILDYAHNADGVRCMSELASKLEVKGKRITVLAGPGDRRDE 793

Query: 398 KRPIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEIIH-GIP--GFIEKGNRIEAI 449
               + K A    DI I   D+ R     +E PE + + +   GI         + +EAI
Sbjct: 794 DIVNIAKAAAGHFDIYICKADDNRRGRGVNEVPELLASSLRAEGIDESQIYCISDEVEAI 853

Query: 450 RTAIEMLNKQDVLVVAG-------K-------GHETVHI 474
              +E+ N  D+L++ G       K       GHE    
Sbjct: 854 NKGLELANTDDLLMIFGDAITRCWKQIINFNSGHEPEQE 892


>gi|300813521|ref|ZP_07093856.1| Mur ligase family, catalytic domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512367|gb|EFK39532.1| Mur ligase family, catalytic domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 119

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 12/128 (9%)

Query: 50  VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
            G   DGH +I  A   GA   VV     +           P + VDNTR  L+  A   
Sbjct: 1   KGKITDGHKYIKNAKNNGAIVAVVEDFKEVY---------IPQIKVDNTRTILADLAKNF 51

Query: 110 YGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-TISSFAQDNRLTTPS 166
           Y    +   ++ +T T+GK++ +  ++ I   + +++  IG      +     + LTTP 
Sbjct: 52  YKDPSKDLKVIGITATNGKTTTSFMLKNILSENKINTGIIGTVYTKFADVNIPSILTTPE 111

Query: 167 PIYLAKAL 174
            + L K  
Sbjct: 112 SLELQKYF 119


>gi|289704959|ref|ZP_06501374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
 gi|289558295|gb|EFD51571.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
          Length = 504

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 85/479 (17%), Positives = 153/479 (31%), Gaps = 31/479 (6%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ-AGWIFVAIVGNKEDGHLFIPQAI 64
           L      E ++      +      +   + DSR +   G ++VA  G + DGH FI  A+
Sbjct: 4   LTAAQIAEAVSGTLSATLDPATVLV-HATPDSREVTAEGTLYVAKPGERADGHDFIDAAL 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS----RLYGKHPENILAV 120
             GA A++   A    D +A      P ++V++    +   A     R+    P  ++ +
Sbjct: 63  GAGAAAVLAERATHAPDGAAH-----PAIIVEDAVLAMGALAREIVRRVREHSPTTVIGI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL-SYLSS 179
           TG++GK++    +  +    G +   +G  +                  L   + +    
Sbjct: 118 TGSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRSLVVEMGADHVG 177

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +     G+            G   N+ R   +  +       A + L +E + 
Sbjct: 178 NIAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVA 237

Query: 240 KE---SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                + A I    A  + V + A +      S     + +            QV     
Sbjct: 238 GMAARTAAPITWFTADERGVARAAEDVAAGRASGLVAARDVRADDQERPLFDLQVGTDEA 297

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRG 355
                    L G   V+N L AA    A G+D A +   L+ L      R E        
Sbjct: 298 AVRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLGPASRFRMERTDRADGV 357

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDL 409
             I   Y     S+   L+ + T+      R   V G     GD    +  ++G+  + L
Sbjct: 358 TIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVRL 417

Query: 410 --ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A + +V         P  I   +  G          +  +A     E L   D+++V
Sbjct: 418 NIAQLLVVGA----GARPLYI-GALNEGSWGEEAHFVDDAAQAEAFLTEHLRPGDLVLV 471


>gi|203284225|ref|YP_002221965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
 gi|201083668|gb|ACH93259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
          Length = 465

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 140/424 (33%), Gaps = 33/424 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ-AGW---IFVAIVGNKEDGH 57
           K++D++      L +   I  +   ++ ++  S DSR I        ++ A  G++ DG 
Sbjct: 5   KIKDILDS----LKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGF 60

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            F+   I  G +  V S    L          +   L+  N    L   A+    K    
Sbjct: 61  FFVKYLIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFK 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TG++GK++    +  I      +    G  ++          T             
Sbjct: 121 RIAITGSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTKGD---------- 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +      V  S  G      + +       TN+   H+   +  +     K ++  +
Sbjct: 171 ---EEYAVFEVGISYVGEMNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIITK 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   I+         + + A +    +    ++   + ++    +++K     + +
Sbjct: 228 DTKM---LILNESCPQHVYLEEIAKSVNPNINIFYFEFHNLQIRSFSFVNDKFSYDFTYK 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G D+  L P  G+  + NA+    L + +G+    +   L       GR E V       
Sbjct: 285 GCDYSILLP--GKHNICNAISCINLALFLGLSENEIRNGLLHADFQKGRAELVRIKDY-L 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQG----KRPIMGKIALDLAD 411
            +   Y    +S   + + I  +    R I+V G   +  +      +  + ++ L   D
Sbjct: 342 VLNDSYNGNLSSFMALKEMILDLEIKDRKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFD 401

Query: 412 IAIV 415
              +
Sbjct: 402 KVFL 405


>gi|307265084|ref|ZP_07546644.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919882|gb|EFN50096.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 464

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 134/426 (31%), Gaps = 53/426 (12%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N PI+   +    L L   +      +  +AV+G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKY-----KYGIAVSGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I    G                    L       L   +   +S+    
Sbjct: 119 GKTTTTSLISVILDGMGFDPTV---------------LVGGEVDVLGGNVRVGNSEYFVT 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            + E +   L                N+  DH+DY +       +  R F  L+P +   
Sbjct: 164 EACEYTDSFLK------FYPYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DDA +  V+   +                                  E    +F  
Sbjct: 217 VACKDDANTMYVVNGLNKNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  +YNAL A  +   +GID      +L +      RFE  G    G  I  DYAH
Sbjct: 277 SIPGKHNIYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKG-IVDGITIVDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L+  +     RII +F      R +       + + D AD  I+ D     E
Sbjct: 336 HPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAE-SFDNADKIIIADIYAARE 394

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG----------- 466
                   + +   I       +   +    +    +     D+++  G           
Sbjct: 395 KDTGIVSSKDLVELISQRGKDALYLKDFDSIVEYLNKNAKAGDLVLTVGAGNIYEVGEMF 454

Query: 467 -KGHET 471
            KGHE 
Sbjct: 455 LKGHEK 460


>gi|327458729|gb|EGF05077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1057]
          Length = 456

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 83/484 (17%), Positives = 153/484 (31%), Gaps = 61/484 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I+   +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI              +  +    S    +  P L+VD+        A     K   ++L
Sbjct: 54  FIAT----------AFAHGAAATLSDHPVAEGPYLLVDDVLTAFQCLAQYYLEKRQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +   +            G    +   C    K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADYKLV-------RFGPDADIFLTCLEERKDSLSFDCNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  G+    + +   +L +   R E+    +    +
Sbjct: 262 EKRIDLPVTGKYNATNAMIAAYAALQEGVSEVAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI     GR + V     +     + + G +   L +  IV
Sbjct: 322 SDVYNANPTAMRLILETFSTIPANPGGRKLAVLADMKELGADSKSMHGSMITSL-NPEIV 380

Query: 416 TDDNPRSEDPEKI---RAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
           TD     +D E +     EI   G   +  K +         +A+R   E L   D +++
Sbjct: 381 TDLFLYGQDMEALYDYAKEIYPPGKVHYFIKNDEKDQFEQLTKAVR---EKLTPADQILL 437

Query: 465 AGKG 468
             KG
Sbjct: 438 --KG 439


>gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
 gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
          Length = 455

 Score = 83.4 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 154/448 (34%), Gaps = 37/448 (8%)

Query: 26  RERKI--NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            + ++    +++D+R +  G +FVA+VG + D H FI QA   GA A +V          
Sbjct: 21  PDTEVALTSITTDTRRLGPGALFVALVGERFDAHDFIAQAREAGAAAALVERRQDDP--- 77

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                  P L V +TR  L L            ++AVTG SGK++V   +  I  RSG +
Sbjct: 78  ------LPQLEVADTRLALGLLGRARRLAWGGPLVAVTGNSGKTTVKQMLATILSRSGAT 131

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  +                                 V + A+  G          
Sbjct: 132 LATRGNLNNDFGAPMTLLELDGE-------------HRRAVVELGANHLGEIAWTASLAM 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+   H+           A        L ++  A++  DD Y +    +A + 
Sbjct: 179 PDVAVITNVTGAHVGEFGGMGRIAQA-KGEILGGLSRDGVAVLNRDDRYFRFWASQAGSR 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLC 322
                 +  +G+      VC    +   T+S +G++       L G   V NAL AA   
Sbjct: 238 EVLDFGLEDEGRLRAETLVCDEFGRYAFTLSFDGRELGRVQLALMGRHNVANALAAAAAA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A+  D A VL  LE++  V GR       +    +   Y     +++  L+ + T+ + 
Sbjct: 298 LALRADPADVLAGLEEVEPVAGRLGVFAGRNGARLLDDTYNANPGAVKAALETLATLPAP 357

Query: 383 RIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           R  ++   G  G+        +G  A  L    + T      E           G     
Sbjct: 358 RWCLLGAMGELGEASAHWHAEVGHHARTLGIDFLGTL----GEAARPASRAFGEGG---Y 410

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +R    R  +  L     ++V  KG
Sbjct: 411 HFDDREALTRHVLHHLPPGASVLV--KG 436


>gi|269219537|ref|ZP_06163391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210779|gb|EEZ77119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 472

 Score = 83.4 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 87/460 (18%), Positives = 150/460 (32%), Gaps = 34/460 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
              P      +I+ +++D+R +  G +F AI G + DG      A++ GA A+V S   +
Sbjct: 19  GDTPPDVAREQISSLTADTRTVSGGEVFAAIKGARVDGAELAGAALSAGARAVVTSDPST 78

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFA------SRLYGKHPENILAVTGTSGKSSVASF 132
                A       ++VVD+  K +   A      +R  G     ++AVTG+ GK++V   
Sbjct: 79  AVASGADPA---RVIVVDDVEKAIGALARANLQRARAEGNPALKVVAVTGSVGKTTVKDL 135

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + +  G      G  +           T      L   +       + +++  A   
Sbjct: 136 LASLVESRGPVIAPPGSFNNELGLPITVLRTDAGTATLVLEMGADHVGNIDYLTSIAPPD 195

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                          +   + R H+           A          +    ++ ADD  
Sbjct: 196 A-------------SAVLIVARAHLGEFGGIDNVGRA-KSELVTGTREGGVVVLNADDPR 241

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              +   AH       + G          V A   +   T+     + D    L GE  V
Sbjct: 242 VAAMAGLAHGPVLTFSARGAGDVAARNIDVGADG-RASFTLVTPEGEADVKLRLVGEHHV 300

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL AA L  ++GI +A +   L  +         V        I   Y    +S+   
Sbjct: 301 ANALAAAALAHSLGIPTAQIASTLSAVGAASPHRMDVFEAGGATVIDDSYNANPDSMRAG 360

Query: 373 LKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           L  +  +  GR  + V G     G+    +   +GK A       +V       E+   +
Sbjct: 361 LAALERLGRGRRKVAVLGEMLELGEASLLEHEAIGKAAAQAGVACLVAV----GEEARPL 416

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +                 A+R     L   DV++V  KG
Sbjct: 417 ASAAEAEGVDATWAAGPEGALRELDAALAAGDVVLV--KG 454


>gi|320352822|ref|YP_004194161.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121324|gb|ADW16870.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 461

 Score = 83.4 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 165/467 (35%), Gaps = 53/467 (11%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL+  L  + +   + ++ +++   R ++       + G    GH     A   GA+ +
Sbjct: 22  AELLLSLG-YRVSGSDLRVTDIT---RRLEH------LGGVIHQGHD---AAWVAGADVV 68

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V S+A +  +          + VV    + L+           +  +AV G+ GK+S  S
Sbjct: 69  VTSTAIAADNPEVVAAKEAHVPVVQRA-EMLAELMRL-----KKYGIAVAGSHGKTSTTS 122

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V  I   +GL    +     +     + RL     +      S  S             
Sbjct: 123 MVAAILAEAGLDPTVV-VGGKVHGLGSNARLGEGEFLVAEADESDGSFLK---------- 171

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +  +    TN+  +H+DY++      +     F   LP    A++  D+ 
Sbjct: 172 ----------LSPVIEVVTNIDLEHLDYYRDIDHIKD-MFLEFINRLPFYGVAVVCIDND 220

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           +  +++ R          +  Q     +K +      Q    S + +        PG+  
Sbjct: 221 HIAQLLPRIQKRIA-TYGLTEQADLQAVKIISGNGTSQYTVRSRKEELGVIRLNRPGKHL 279

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +YN+L A  + + + ID +++   LE    V  R +  G  + G  +  DY H    +  
Sbjct: 280 IYNSLAAVSVGLELEIDFSVIARALENFQGVQRRLQIKG-EAAGVLVVDDYGHHPTEIRA 338

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLADIAIVTDDNPRSEDP---- 425
            L  +R     R +VV        + K  +  +   A   AD+ ++TD     E P    
Sbjct: 339 TLDAVREGWPDRRVVVAFQPHRYSRTK-GLFAEFTTAFRRADVLVLTDIYAAGESPIEGV 397

Query: 426 --EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E+++  I   G          +E  +  + +L   D+L+  G G+
Sbjct: 398 TSERLQEAIKQRGQRQAHFIPQLVEQPQVLMPLLQPGDLLLTLGAGN 444


>gi|114321341|ref|YP_743024.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311123|sp|Q0A6K3|MURC_ALHEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114227735|gb|ABI57534.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 140/414 (33%), Gaps = 51/414 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           QGA+A+VVSSA    +          I VV   R+   L+      YG      +AV GT
Sbjct: 77  QGADAVVVSSAVQADNPEVQAAREYRIPVV---RRAEMLAELMRFRYG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +    G   ++ IG    ++S A   RL +                  
Sbjct: 128 HGKTTTTSLVASVLAEGGLDPTYVIG--GRLNSSASHARLGSG------------RYLVA 173

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                +AS   L          +    TN+  DH++ +             F   LP   
Sbjct: 174 EADESDASFLHLK--------PMMAVVTNIDADHLETYGGDFDQLRHTFDEFLHHLPFYG 225

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD   +++                         +     + + T+      F  
Sbjct: 226 LAVLCHDDPVLRDLGPEIARQVRSYGFAEDADL--RAVDIEQSGRRTRFTVVDGEATFPV 283

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
              LPG   V NAL A  +   + +D A +   L++   +  RF+  GT   G     + 
Sbjct: 284 EVNLPGRHNVQNALAAIAVARELHVDVAAIQRALQRFQGIGRRFQDHGTLRFGDARVTLV 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD 417
            DY H    +   L+ +R    GR ++V        + +       ++  + AD  +VT+
Sbjct: 344 DDYGHHPREIAATLRAVRDGWPGRRVLVVFQPHRYSRTRDLFEDFARVLSE-ADALLVTE 402

Query: 418 DNPRSEDPEK------IRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLV 463
                E P        + A I   G    +      E ++  +  +    D+++
Sbjct: 403 VYAAGEPPVAGATGRGLCAAIRARGQVNPVFVETLEE-LQQVLPGVARDGDLVL 455


>gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
          Length = 813

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/459 (15%), Positives = 147/459 (32%), Gaps = 54/459 (11%)

Query: 30  INEVSSDSRHI-QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           I+++  D+R I  +  +F A+ G ++DGH F+      GA+  +V   +           
Sbjct: 25  IDQIVIDTRRIYASNALFAALKGQRQDGHSFVS---GSGAKFALVEKHWEGP------AD 75

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              +L VD+        A     +   N++AV G+ GK+ V   ++ +   S   +    
Sbjct: 76  GPSLLKVDDPLTAFQEIAGSYRSQLRGNVIAVIGSYGKTMVKDLLRHLLSSSFTVA---- 131

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                S  + ++++  P  +  A                   SH  +  RL  I  I  S
Sbjct: 132 ----SSPESFNSQVGVPLSLLGAAKAHEQVIIEAGF------SHPGEMARLCKI--IRPS 179

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
              L      +  T  +       +    L  ++   +   D     + K  +       
Sbjct: 180 HIILTHVGNKHLHTIGSKEQIAQEMCHFSLSSDASWTLLPKDPILSPLPKPYYWDT---- 235

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL-VAAGLCIAIGI 327
                    +L       N + +T+     D   +    G   + + + +       +G+
Sbjct: 236 ------PQPNLPHASFHENSKAITVQFPKGDAHTILRPLGMSYILDLINIGLKAAYLLGV 289

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIV 386
               +++ L+     P   E   + +    I   Y     SL+  L+        G+  +
Sbjct: 290 PEKQIVDALKTYQPEPMSTEIWKSQNGATFINETYCEDPQSLDCALRRFDFHSPKGKKTL 349

Query: 387 VFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +F      D      +G+ I   + D  ++ + + + E   K  A               
Sbjct: 350 LFSGIKQNDPALDARIGEAIGNSMPDTLMLIEPSFQLEHAVKTIAPQTA----IRHFSTV 405

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSV 484
             A++     +  +D+L+V GK           +K    
Sbjct: 406 EAALKDHAGSMRPEDILIVKGK-----------KKLPFD 433


>gi|225181552|ref|ZP_03734994.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167800|gb|EEG76609.1| cyanophycin synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 898

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 124/371 (33%), Gaps = 29/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            +VTGT+GK++ A  ++ + +R GL +          +  Q  +     P+     L+  
Sbjct: 483 FSVTGTNGKTTTARMLEFVMRRHGLYTGICCTDGIYFNGQQVKKGDLTGPLSARTVLA-- 540

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               +    +E +  GL +  L   +      TN+  DH+     +     A ++     
Sbjct: 541 -HPDIEVAVLETARGGLIRRGLGYDRADVAVITNIRADHLGQDGIETLDDLAHVKSLVAE 599

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------------KVCAI 285
               +  ++   D      +     A    +S+      +                +   
Sbjct: 600 AVYPAGCVVLNADEPHVNELAARVWAEVIYVSMQSDNIVVRHHLGKGGRAVFVRRGLVLA 659

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----V 341
            +   V      + F          QV N L A   C   G+       +L         
Sbjct: 660 AHGSGVVPVGRVRSFVVTHGGRALHQVENLLGALAACWGFGLSPRQAAAYLRTFAAQPGD 719

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR           R+ VDY H ++ +E      + + + R+I V G  GDR       
Sbjct: 720 NPGRCNLYQVG--DIRVLVDYGHNADGIEKTGLLAKKLGAERLIGVVGVPGDRSDELVMQ 777

Query: 402 MGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGF-------IEKGNRIEAIRTAI 453
            G+ A    D+ ++ +D + R   P ++   ++ G             + N   A++ A+
Sbjct: 778 AGQAAAGFFDLLVIKEDHDLRGRRPREVAGLLMRGALNAGRDRAALKVEPNERRAVKKAL 837

Query: 454 EMLNKQDVLVV 464
            +    D++V+
Sbjct: 838 ALSRPGDLVVI 848


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 133/414 (32%), Gaps = 44/414 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+AIVVS+A    +       +   P L   +    L    +   G      +AV G+
Sbjct: 67  RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAAL---VNEYDG------IAVAGS 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +     R+ +S   I     +     + +L T                   
Sbjct: 118 HGKTTTTSMIGVTLDRASVSPTVI-VGGEVPDLGTNAKLGT------------------- 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 S           ++      TN+  DH+D++ T +    A  R F   +  +  
Sbjct: 158 -SRYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEA-FRTFISQIDADGT 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  ++   + +                        + C                    
Sbjct: 216 AVLCYENEILRRLGAETDRTVVSYAIDAAADYRAADIETCGSVISFT-VFERGTALGRIS 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V NAL    +    G+D   + + L   H    RF+  G    G  +  DYA
Sbjct: 275 LHIPGRHNVLNALACVAVARLAGLDFDRIADALAHFHGAKRRFQTKGKER-GIWVVDDYA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L   R    GR++ VF      R Q  R   G      AD+ ++TD     
Sbjct: 334 HHPTEIAATLAAARQTEPGRLVCVFQPHRYSRTQLLRAEFGGCFAA-ADLLLLTDVYAAG 392

Query: 423 EDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      E +  E+        +    R + ++   E +   D+++  G G+
Sbjct: 393 EAPIPGISGETLMEEVARQTGQDAVYLPERADLVQYLAEHVRPGDLVITMGAGN 446


>gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
 gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
          Length = 478

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 159/451 (35%), Gaps = 39/451 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR I  G ++ AI G+  DGH F+  A+  GA   V+ +A   +       ++
Sbjct: 27  ITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDAALKAGAALAVIEAAQRDK-----FAAD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+L+VD+    L   A     +    ++AVTG+ GK+S    ++ +    G +   +  
Sbjct: 82  APLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSVLGAQGKTHASVAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+              +  +  G     +  ++      
Sbjct: 142 FNNHWGV----------PLTLARCPEDAR---FAIFEIGMNHAGEISPLVKMVRPHIAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T +   H+++    +A  +AK  +FE + PK +  +   +  +++   +       +++S
Sbjct: 189 TTVEPVHLEFFSGIEAIADAKAEIFEGVEPKGAVVLNRDNAQFARLQRRAKKLGIAKIVS 248

Query: 270 VG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
            G  +     L  V        V   + G +  +   +PG     N+L         G D
Sbjct: 249 FGADEKADARLLDVALHPACSAVHARILGHELTYKLAMPGRHMAMNSLAVLAAASLAGAD 308

Query: 329 SALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVD--YAHTSNSLEMILKNIRTITSG--- 382
            AL    L +     GR          G    +D  Y     S+   L  +     G   
Sbjct: 309 LALAGLALSQAQPAAGRGVRHVLMVPNGEATLIDESYNANPASMAAALTVLGQAGVGTQS 368

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           R I V G     G         + +     A D+        R+     +   +  G  G
Sbjct: 369 RRIAVLGDMLELGSSGADLHRGLTEAINANAIDMVFCCGPLMRN-----LWDALSSGKRG 423

Query: 439 FIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
              +G+   A+    +  +   DV++V  KG
Sbjct: 424 GYAEGSV--ALESQVVAAIRAGDVIMV--KG 450


>gi|149186201|ref|ZP_01864515.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
 gi|148830232|gb|EDL48669.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
          Length = 469

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 135/418 (32%), Gaps = 50/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA  +V S+A    +          I VV   R+   L+              +AV GT 
Sbjct: 67  GAAVVVTSTAVRRTNPEVAHALENRIPVV---RRAEMLAELMRLRS------TIAVAGTH 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +    G     +     I  +  + RL                      
Sbjct: 118 GKTTTTSMIASLL-DCGAIDPTVINGGIIEQYGSNARLGDSD-----------------W 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        RLDG        TN+  +H+D++       +A    F   +P    A
Sbjct: 160 MVVEADESDGSFLRLDGTI---AVVTNIDPEHLDHYGDFDGVKDA-FVEFIHNVPFYGAA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D    + V+ +  +          Q     +         +   I  +  + D   
Sbjct: 216 VLCIDHPEVQAVIGKVRDRRVVTYGFNLQADICGVNVQPHEGGNRFDVIVRQRGEEDRRI 275

Query: 305 -----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   V NAL A  + I +G    ++         V  RF  VG +  G  + 
Sbjct: 276 ENVCLPMPGRHNVQNALAAIAVSIEMGCPDEVICNGFSSFGGVRRRFTNVG-SVAGATVI 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    +  +L+  R  T  R+I V      R      +M         AD   +T 
Sbjct: 335 DDYGHHPVEIRAVLEAAREATKNRVIAV--MQPHRYTRLHDLMDDFQSSFNEADQVYITP 392

Query: 418 DNPRSEDPEK--IRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                EDP +      ++ G+            +R +  +     + + D++V  G G
Sbjct: 393 VYAAGEDPIEGVSAEALVEGLKSRGHRNAATVEDRDDLAKKLATDVEEGDLVVCLGAG 450


>gi|78212659|ref|YP_381438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9605]
 gi|78197118|gb|ABB34883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9605]
          Length = 449

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 140/442 (31%), Gaps = 40/442 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR +QAG  FV +VG + DGH F+ Q     A+A VVS  ++       +  +   
Sbjct: 29  VCTDSRQLQAGDFFVPLVGERFDGHHFLEQLPEHKAQAAVVSRCWAEP-----LPPDLLH 83

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             VD+T       A        + ++AVTG++GK++    ++      G      G  + 
Sbjct: 84  WRVDDTLLAYQQLALLHRRALGKPLVAVTGSAGKTTTRELIRAALAPLGAIQASEGNNN- 142

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLIAGSFTN 211
                         P+ +  A +  ++     + +E    GL +  RL        +   
Sbjct: 143 ---------NDVGVPLTVLGATAADAA-----LVIEMGMRGLGEIERLSYCTEPDLAVIT 188

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
                       +    A        L  +   +I A D   +  +    +     + + 
Sbjct: 189 NIGTAHIGRLGSREAIAAAKCEITAGLHPQGTVVIPAGDPLLESALSAVWSGRVLRVRLA 248

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +           ++  +         +            N L+A  +   +G+    
Sbjct: 249 DDPEVESDLVGDINGDQLLIDADRLPLQLEGRHN------ARNLLLAVAVADQLGVSRRA 302

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +      +     R    G    G  +  +  + S    +   ++     GR   V G  
Sbjct: 303 LQAIQVTVPGGRNRRLQQG----GLTLLDETYNASPEAVLAALDLLAAQPGRRFAVLGTM 358

Query: 392 ---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              GDR       +   A+ L  D  ++ D         K  AE+   +P      N  +
Sbjct: 359 LELGDRSLELHQEVAARAVQLGLDGLVLVDGGAEG----KAMAEVAASLPHLQLVSNPED 414

Query: 448 AIRTAIEMLNKQDVLVV-AGKG 468
           A       L   D L++ A +G
Sbjct: 415 AAAPLAAWLEAGDFLLLKASRG 436


>gi|254513896|ref|ZP_05125957.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
 gi|219676139|gb|EED32504.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
          Length = 928

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 120/373 (32%), Gaps = 28/373 (7%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP--IYLAKAL 174
           A+TGT+GK++ +  +  I + SGL+  Q                 +T P+   I L    
Sbjct: 495 AITGTNGKTTTSRMLAHILKMSGLTVGQTSTDGVYIDGRLTVAGDMTGPTAAQIVLRDPS 554

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-----TNLGRDHIDYHQTQQAYFNA 229
              +        +  S  G  +  +     IA         N   D  +  +        
Sbjct: 555 VNAAVMETARGGILRSGLGYQRSNVSACLNIAADHLGLKGVNSLEDLAEVKRVVVEVARD 614

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----KFIHLKKVCAI 285
              L  + +     A     +      M R+H      +  G       + I+   +   
Sbjct: 615 AAVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLEQGINGGMITLY 674

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE----HLEKLHV 341
             +      +                V NA+ AA L   + ID   + +           
Sbjct: 675 DEQGHNIPLLWTHLIPATLEGRAMHNVQNAMFAAALAYHMHIDLENIRQGLRTFDSTFFQ 734

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRP 400
            PGR      +    ++ +DYAH   +++M+   +     G R IVV    GDR      
Sbjct: 735 SPGRLNV--YDKHPFKVILDYAHNPAAVKMVCDVVDRYEIGGRKIVVLTMPGDRRDEDIV 792

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTA 452
            +  IA    D  I   DDN R  +P ++ A +  G+                 EA + A
Sbjct: 793 EVAGIAAGHFDHYICRRDDNLRGREPSEVPALLKQGLLAGGVPEDRIQIIEREEEANQAA 852

Query: 453 IEMLNKQDVLVVA 465
           ++M    D+L++ 
Sbjct: 853 LDMARGGDLLLIL 865


>gi|329944587|ref|ZP_08292727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530140|gb|EGF57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 486

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 152/470 (32%), Gaps = 50/470 (10%)

Query: 25  WRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
             +  +   V +DSR    G +FVA+ G + DGH  +  A A GA   +VS   + +   
Sbjct: 22  GPDAPVTGPVVTDSRLATEGALFVAVHGERTDGHAHLGSAGALGAVGAIVSDLEAARSGL 81

Query: 84  ATIRSNTP------ILVVDNTRKFLSLFASRLYGKHPE---------NILAVTGTSGKSS 128
                         +++V++T   L   A                   ++A+TG+ GK++
Sbjct: 82  IQGERGETEDPSMGLVLVEDTVTALGALARTHLAGLRRTAADRGERLTVVAMTGSVGKTT 141

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
                +Q+   SG +       +          LT               S     + + 
Sbjct: 142 TKDLTRQLLAASGPTVAPRASFN----NEIGLPLTVLEADE---------STRYLVLEMG 188

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS  G   +  D   L       +G  H+    + +    AK  +   LLP+    +   
Sbjct: 189 ASGPGHITYLTDIAPLDVAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLLPEGVAILNAD 248

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           D   +                 G    +   +    A  +   + +            + 
Sbjct: 249 DARAAAMAGLAPAQVLTFSAQGGPADLRAERIVLDEAARSAFDLHLPGLDGPRRVQLAVA 308

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           G   V NAL AAGL +A G++  L+ E L  +    P R +    +     I   Y    
Sbjct: 309 GAHNVANALAAAGLALAAGLEPELIAERLGSVSIESPHRMDVSELSGDLLLIDDSYNANI 368

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +S+   L  +  +  GR  VV              +G+ +   AD A   +    +    
Sbjct: 369 DSMTAALAALPALAGGRRRVVVVSEML-------ELGESSA--ADHARTGELAAEAGAAM 419

Query: 427 KI----RAEII--HGIPGFIEKG--NRIEAIRTAIEMLNKQDVLVVAGKG 468
            I      E +   G  G    G  +   AI     +L+  D ++V  KG
Sbjct: 420 LIGIGSTQEALDAAGARGVEVVGFDDAAAAISQIDALLSDGDAVLV--KG 467


>gi|15609294|ref|NP_216673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanyl ligase MurF [Mycobacterium
           tuberculosis H37Rv]
 gi|31793337|ref|NP_855830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium
           bovis AF2122/97]
 gi|121638039|ref|YP_978263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661973|ref|YP_001283496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148823366|ref|YP_001288120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|218753880|ref|ZP_03532676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis GM 1503]
 gi|224990533|ref|YP_002645220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|254551195|ref|ZP_05141642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260205451|ref|ZP_05772942.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis K85]
 gi|289574840|ref|ZP_06455067.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289762318|ref|ZP_06521696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|294993543|ref|ZP_06799234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis 210]
 gi|306776407|ref|ZP_07414744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|306798015|ref|ZP_07436317.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|61228235|sp|P0A5L4|MURF_MYCTU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|61228236|sp|P0A5L5|MURF_MYCBO RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2104321|emb|CAB08670.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Rv]
 gi|31618929|emb|CAD97034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis AF2122/97]
 gi|121493687|emb|CAL72162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148506125|gb|ABQ73934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148721893|gb|ABR06518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|224773646|dbj|BAH26452.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289539271|gb|EFD43849.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289709824|gb|EFD73840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|308215195|gb|EFO74594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|308341705|gb|EFP30556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|326903774|gb|EGE50707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis W-148]
          Length = 510

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 89/512 (17%), Positives = 155/512 (30%), Gaps = 82/512 (16%)

Query: 5   DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L      E++      I P     R++   V  DSR I  G +F+A+ G + DGH    
Sbjct: 3   ELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHDHAA 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE------ 115
                       + A       A      P +VV       ++ A  L   +        
Sbjct: 63  -----------SAVAAGAAVVLAARPVGVPAIVVP-PVAAPNVLAGVLEHDNDGSGAAVL 110

Query: 116 -------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
                               I+ +TG+SGK+S    +  +    G      G  +     
Sbjct: 111 AALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGH 170

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                  T                    + + A  HG      +      G   N+G  H
Sbjct: 171 PWTVLRAT-------------RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAH 217

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +    +++     K  L  + +P     ++ ADD     + K       RV        +
Sbjct: 218 LGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVW 276

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +  +  + + T+       +    + G+ QV NAL AA + +  G     V   L
Sbjct: 277 AGPVSLDELA-RPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAAL 335

Query: 337 EKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGC 390
                V   R +          I   Y    +S+   L+ +  I        R   V G 
Sbjct: 336 TAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGE 395

Query: 391 G---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
               G+    +   +G++A+ L  + + +V     RS         ++ G  G  E    
Sbjct: 396 MAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATAD 452

Query: 446 IEAIRTAIEMLN-------------KQDVLVV 464
             A RTA+ + +               DV++V
Sbjct: 453 HGADRTAVNVADGDAALALLRAELRPGDVVLV 484


>gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera]
          Length = 510

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 145/442 (32%), Gaps = 34/442 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFI-PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           + +D+R ++ G  F AI G   D H FI P+   +G   ++ +      D          
Sbjct: 74  ICTDTRTLEPGQWFFAIRGENFDAHEFITPELGHKGCVGVIGNWVCPNWDKGFVEMGGE- 132

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                 T   L   A+    K    ++ VTG++GK++  + +    +  GL     G  +
Sbjct: 133 ------TLTSLEKMANYARNKFHGCLVGVTGSAGKTTTRTMIALTLESLGLVHQTHGNEN 186

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                   + +  P             + G   + +     G         +       N
Sbjct: 187 NR-IGVCLSLIGIP------------QNVGFVVLELGMDRRGEIMELARKARPSIRVILN 233

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +    AK  +  E  P +    +   D      +   H     +    
Sbjct: 234 VGCAHLENFASLEEVAMAKGEILAEAKPGD--VCVLNADDPLVMSLPVPHGVKKVLFGQR 291

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +       +     +  +V +    +  +F+ P PG     NA   A + +A+G+    
Sbjct: 292 LECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACATAAVAVALGVSLPQ 351

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGC 390
           V   L +   V  R E     +    I   Y     S +  ++ ++ I   G+ + + G 
Sbjct: 352 VGISLSRFIPVSMRSELEVAKTGIKIINDVYNANPVSTKAAIELLKNIDCKGKRVAILGD 411

Query: 391 G---GDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
               G  +     +M  +  D   D+  +     R     +     + G    +   +  
Sbjct: 412 MLELGQAETVSHEMMLSLCCDSHFDLIALVGK--RFLRAAENLN--LVGERNLLYSPDAE 467

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
                 ++ LN+ DV++V  KG
Sbjct: 468 SLAFEIVQRLNRNDVILV--KG 487


>gi|217967632|ref|YP_002353138.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
 gi|254766000|sp|B8E324|MURC_DICTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217336731|gb|ACK42524.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
          Length = 464

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 150/433 (34%), Gaps = 51/433 (11%)

Query: 50  VGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFA 106
            G K   GH   P+ +    + +V+SSA    +         N PIL   +    L+   
Sbjct: 48  KGVKIYKGHN--PENVNN-VDLVVISSAIPPDNEEYVYAKERNIPILHRSDLLADLTK-- 102

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                   +  + V G  GK++  S +  + + + +    +     +     + +L    
Sbjct: 103 -------EKKSIIVGGAHGKTTTTSMIALVLENNKIDPTIL-VGGELEDIGGNAKLGNGE 154

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +      S                       +  +       TN+  DH+DY+++ +  
Sbjct: 155 YLVAEGDESD--------------------GSILKLDPYILVITNIDNDHLDYYKSLEKI 194

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            +  +++ E++       +    +     + K          + G+         +    
Sbjct: 195 KDTFLKVIEKVPKGGFAVLNLDCENVRDIIRKIK---NKEYYTYGFSNADFKADNIVLNL 251

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +  +  +    +        +PG+  + N+L A  +   +G+D     + LE+   V  R
Sbjct: 252 SGSEFDVYFRNEKLGRVKLRVPGKHNILNSLSAIAVSKILGLDFETTTKALERFQGVQRR 311

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGK 404
            +  G       ++ DY H    ++  L+ +R   + R++VVF      R       + +
Sbjct: 312 IQLKGIIEDDILVFDDYGHHPTEIKATLETLRLY-NRRLVVVFQPHRYTRTYFLSKEIAE 370

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIE--KGNRIEAIRTAIEML 456
            AL L D+ I+T+     E P      + I  EI    P        N IEA   A  +L
Sbjct: 371 -ALSLGDVIILTEIYSAGEKPIPGVSSKNIYDEIREKYPNLEVYLVDNIIEAASKAKSIL 429

Query: 457 NKQDVLVVAGKGH 469
            K D+L+  G G+
Sbjct: 430 KKGDLLLTLGAGN 442


>gi|297521714|ref|ZP_06940100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Escherichia coli OP50]
          Length = 76

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 6  LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIA 65
          +I     +L + L+   +Q  +  ++ V++D+R +  G +FVA+ G + D H F  QA A
Sbjct: 1  MISVTLSQLTDILNG-ELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKA 59

Query: 66 QGAEAIVVSSAYSLQ 80
           GA A++VS    + 
Sbjct: 60 GGAGALLVSRPLDID 74


>gi|253798778|ref|YP_003031779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289554056|ref|ZP_06443266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|297634746|ref|ZP_06952526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|297731735|ref|ZP_06960853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659070|ref|ZP_07815950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|253320281|gb|ACT24884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438688|gb|EFD21181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|328458541|gb|AEB03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 4207]
          Length = 510

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 89/512 (17%), Positives = 155/512 (30%), Gaps = 82/512 (16%)

Query: 5   DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L      E++      I P     R++   V  DSR I  G +F+A+ G + DGH    
Sbjct: 3   ELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHDHAA 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE------ 115
                       + A       A      P +VV       ++ A  L   +        
Sbjct: 63  -----------SAVAAGAAVVLAARPVGVPAIVVP-PVAAPNVLAGVLEHDNDGSGAAVL 110

Query: 116 -------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
                               I+ +TG+SGK+S    +  +    G      G  +     
Sbjct: 111 AALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGH 170

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                  T                    + + A  HG      +      G   N+G  H
Sbjct: 171 PWTVLRAT-------------RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAH 217

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +    +++     K  L  + +P     ++ ADD     + K       RV        +
Sbjct: 218 LGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVARVSRDNTGDVW 276

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +  +  + + T+       +    + G+ QV NAL AA + +  G     V   L
Sbjct: 277 AGPVSLDELA-RPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAAL 335

Query: 337 EKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGC 390
                V   R +          I   Y    +S+   L+ +  I        R   V G 
Sbjct: 336 TAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGE 395

Query: 391 G---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
               G+    +   +G++A+ L  + + +V     RS         ++ G  G  E    
Sbjct: 396 MAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATAD 452

Query: 446 IEAIRTAIEMLN-------------KQDVLVV 464
             A RTA+ + +               DV++V
Sbjct: 453 HGADRTAVNVADGDAALALLRAELRPGDVVLV 484


>gi|203287763|ref|YP_002222778.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
 gi|201084983|gb|ACH94557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
          Length = 465

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 140/424 (33%), Gaps = 33/424 (7%)

Query: 2   KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ-AGW---IFVAIVGNKEDGH 57
           K++D++      L +   I  +   ++ ++  S DSR I        ++ A  G++ DG 
Sbjct: 5   KIKDILDS----LKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGF 60

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            F+   I  G +  V S    L          +   L+  N    L   A+    K    
Sbjct: 61  FFVKYLIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFK 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TG++GK++    +  I      +    G  ++          T             
Sbjct: 121 RIAITGSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTKGD---------- 170

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
              +      V  S  G      + +       TN+   H+   +  +     K ++  +
Sbjct: 171 ---EEYAVFEVGISYVGEMNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIITK 227

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   I+         + + A +    +    ++   + ++    I++K     + +
Sbjct: 228 DTKM---LILNESCPQYVYLEEIAKSVNPNINIFYFEFHNLQIRSFSFINDKFSYDFTYK 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G D+  L P  G+  + NA+    L + +G+    +   L       GR E V       
Sbjct: 285 GCDYSILLP--GKHNICNAISCINLALFLGLSENEIRNGLLHADFQKGRAELVRIKDY-L 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQG----KRPIMGKIALDLAD 411
            +   Y    +S   + + I  +    + I+V G   +  +      +  + ++ L   D
Sbjct: 342 VLNDSYNGNLSSFMALKEMILDLEIKDKKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFD 401

Query: 412 IAIV 415
              +
Sbjct: 402 KIFL 405


>gi|163753860|ref|ZP_02160983.1| cyanophycin synthetase [Kordia algicida OT-1]
 gi|161326074|gb|EDP97400.1| cyanophycin synthetase [Kordia algicida OT-1]
          Length = 884

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 120/375 (32%), Gaps = 25/375 (6%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + + +   +G +   +  + I   + +  +++G T++   + Q+  L T      A A
Sbjct: 478 STSRIPIIAVTGTNGKTTTTRLIAHMAKMKGYRVGYTTSDGVYIQNRLLMTGDCTGPASA 537

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              L    V +  +E +  GL +  L       G  TN+  DH+           AK++ 
Sbjct: 538 EFVLRDPTVNYAVLECARGGLLRAGLGFKNCDIGIVTNVAADHLGLKGIHTIEQLAKVKG 597

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                       I   D      M++       + S+      I   +            
Sbjct: 598 VIPETVLPDGTAILNADDELVYAMRKNVECNVALFSLDENNPHIKAMQKRGGICAIYENG 657

Query: 294 SVEGKDFDFLFPLPG------------EFQVYNALVAAGLCIAIGIDSALVLEHLEKLH- 340
            +     ++   +               F + N L A       G     +   LE    
Sbjct: 658 YITLCRGEWKMRVIKAVNVPLTFGGKATFMIQNVLPAVITAYLKGFTLEDMRAALETFIP 717

Query: 341 ---VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                PGR           +I VDYAH    +  + + +  + +   I +    GDR   
Sbjct: 718 SASQTPGRLNLFKFK--NFQILVDYAHNPAGMRALKQFVDNLNATEKIGIIAGIGDRRVE 775

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIR 450
               MG +A ++ D  I+  D   R +  E++   +  GI             +  +AI 
Sbjct: 776 DNNEMGALAAEMFDEVIIRQDKRLRGKTEEELIKMLDDGIKMHDPNKKTTIIPSEKKAIL 835

Query: 451 TAIEMLNKQDVLVVA 465
            A++   K  ++V+ 
Sbjct: 836 HAVKNAKKGTLIVLC 850


>gi|225463627|ref|XP_002271742.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 771

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/442 (16%), Positives = 144/442 (32%), Gaps = 34/442 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFI-PQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           + +D+R ++ G  F AI G   D H FI P+   +G   ++ +      D          
Sbjct: 335 ICTDTRTLEPGQWFFAIRGENFDAHEFITPELGHKGCVGVIGNWVCPNWDKGFVEMGGE- 393

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
                 T   L   A+    K    ++ VTG++GK++  + +    +  GL     G   
Sbjct: 394 ------TLTSLEKMANYARNKFHGCLVGVTGSAGKTTTRTMIALTLESLGLVHQTHGN-E 446

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                   + +  P             + G   + +     G         +       N
Sbjct: 447 NNRIGVCLSLIGIP------------QNVGFVVLELGMDRRGEIMELARKARPSIRVILN 494

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +G  H++   + +    AK  +  E  P +    +   D      +   H     +    
Sbjct: 495 VGCAHLENFASLEEVAMAKGEILAEAKPGD--VCVLNADDPLVMSLPVPHGVKKVLFGQR 552

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
            +       +     +  +V +    +  +F+ P PG     NA   A + +A+G+    
Sbjct: 553 LECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHLAQNACATAAVAVALGVSLPQ 612

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGC 390
           V   L +   V  R E     +    I   Y     S +  ++ ++ I   G+ + + G 
Sbjct: 613 VGISLSRFIPVSMRSELEVAKTGIKIINDVYNANPVSTKAAIELLKNIDCKGKRVAILGD 672

Query: 391 G---GDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
               G  +     +M  +  D   D+  +     R     +     + G    +   +  
Sbjct: 673 MLELGQAETVSHEMMLSLCCDSHFDLIALVGK--RFLRAAENLN--LVGERNLLYSPDAE 728

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
                 ++ LN+ DV++V  KG
Sbjct: 729 SLAFEIVQRLNRNDVILV--KG 748


>gi|183983187|ref|YP_001851478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
 gi|183176513|gb|ACC41623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
          Length = 525

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 85/520 (16%), Positives = 154/520 (29%), Gaps = 87/520 (16%)

Query: 5   DLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           D    +  E++    + I P +  +R++   V  DSR +  G +F+A+ G + DGH    
Sbjct: 3   DYTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAA 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV---DN-TRKFLSLFASRLYGKHPE-- 115
                       + A       A      P +VV    + T   L+              
Sbjct: 63  -----------SAVAAGAVAVLAARPVGVPAIVVSPEPDVTADALTGVLEHDADGSGAAV 111

Query: 116 --------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                                I+ +TG+SGK+S    V  + +  G      G  +    
Sbjct: 112 LAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELG 171

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T    YL   +S      +  ++  A                 G   N+G  
Sbjct: 172 HPWTVLRATRGTDYLILEMSARHPGNIAALARVAP-------------PAIGVVLNVGTA 218

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+    +++           + +P     I+ ADD     + +       RV      G 
Sbjct: 219 HLGEFGSREIIAQT-KSELPQAVPASGVVILNADDPAVAAMAEVTAARVVRVGRATATGA 277

Query: 276 FIHLKKVCAIHN-------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                              + Q T+            + G+ QV NAL A  + +  G  
Sbjct: 278 GWAGPGDVWAGPVSLDRLARPQFTMHAGDAAAQVRLGVYGDHQVSNALCAGAVALECGAS 337

Query: 329 SALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIV 386
            + V   L +   V   R +          I   Y    +S+   L+ +  I  G     
Sbjct: 338 VSQVAAALAEAGPVSRHRMQVSTRPDGVTVIDDAYNANPDSMRAGLQALAWIARGEAEST 397

Query: 387 VFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDPEKI-------------RAE 431
                G R Q +R   ++G++A   AD    T+ +       ++              + 
Sbjct: 398 AASQPGVRPQSRRSWAVLGEMAELGADAI--TEHDHIGRLAVRLDVSRLVVVGTGRSMSA 455

Query: 432 IIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + HG           +   +R  A+      +   DV+++
Sbjct: 456 MYHGAVMEGSWGTEAVSVPDRDAALALLRAEIQPGDVVLI 495


>gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823]
 gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823]
          Length = 762

 Score = 82.3 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 79/245 (32%), Gaps = 17/245 (6%)

Query: 30  INEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I  +  DSR IQ   G +F A+ G+   G+ FI  A  QG    V++      + S+   
Sbjct: 26  ITHIYFDSRKIQQANGALFFALSGHSRSGNEFIENAYQQGIRFFVIAK-----NASSKFH 80

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +     V+     L   A+    ++   ++A+TG+ GK++   ++              
Sbjct: 81  PDALYFQVEEPLTALQQLATHHRKQYTYPVVAITGSVGKTTFKEWIFHCISDKFKVVRSP 140

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              ++               + L +     S   +     +     + +  +     I  
Sbjct: 141 KSFNSQ----------IGVALSLLEMHENASIAFIEAGISKPGEMKILRDMIQPDFGIFT 190

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +F    R++   ++          R  +      + A +      + +V +   N    +
Sbjct: 191 AFGKAHRENFADNEEHLLEKWTLFRECKLAFIPHTFADLENRLPGNFQVCESYENHHFPI 250

Query: 268 LSVGY 272
              G 
Sbjct: 251 GYSGM 255


>gi|260434510|ref|ZP_05788480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
 gi|260412384|gb|EEX05680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
          Length = 459

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 154/475 (32%), Gaps = 42/475 (8%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L+ L+                   +  +  V +DSR +QAG  FV +VG + DGH F+ +
Sbjct: 5   LRQLLAAW------GTPQGSSFEPDALVGRVCTDSRQLQAGDFFVPLVGERFDGHHFLDK 58

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
                 +A VVS ++     +    S      VD+T       A        + ++AVTG
Sbjct: 59  LTEHKVQAAVVSRSW-----TEPFPSGLLHWRVDDTLLAYQQLALLHRRALGKPLVAVTG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GK++    ++      G         +               P+ +  A +  +    
Sbjct: 114 SAGKTTTRELIRAALAPMGAIQASEANNN----------NDVGVPLTVLGATAADA---A 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +     G  +      +      TN+G  HI    +++A   AK  +   L PK +
Sbjct: 161 LVIEMGMRGSGEIERLSRCTEPDLAVITNIGTAHIGCLGSREAIAAAKCEITAGLHPKGT 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I   D      +         RV           L     I       I+ +    D 
Sbjct: 221 VVIPAGDPLLESALAAVWSGRVLRVRLADDPVVESDLINADWIGADLVGDINGDQLLIDA 280

Query: 303 LFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                     +NA   L+A  +   +G+    +      +     R        +GG   
Sbjct: 281 DRLPLQLEGRHNARNLLLAVAVADQLGVSRKQLQGMQVTVPGGRNRR-----LQQGGLTL 335

Query: 360 VDYAHTSNS-LEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAI 414
           +D  + ++    +    +     GR   V G     G+R       +   A+ L  D  +
Sbjct: 336 LDETYNASPEAVLAALELLAAQPGRRFAVLGTMLELGERSLELHQEVAARAVQLGLDGLV 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           + D         K  AE+   +P      N  +A       LN  DVL++ A +G
Sbjct: 396 LVDGGAEG----KAMAEVAAPLPHLQLVSNPEDAAVPLAAWLNSGDVLLLKASRG 446


>gi|296131673|ref|YP_003638920.1| cyanophycin synthetase [Thermincola sp. JR]
 gi|296030251|gb|ADG81019.1| cyanophycin synthetase [Thermincola potens JR]
          Length = 890

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 14/179 (7%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNS 353
           K             V N L A+  C+ +GI  A + E L          PGR  F     
Sbjct: 672 KSIPCTLSGQALHNVENVLAASAGCLGLGIPVAQIKEGLLSFEPGLKGNPGRLNF--FEV 729

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G ++ VDY H     + +L   + +   R+I V G  GDR       +G+IA    D  
Sbjct: 730 AGVKVLVDYGHNPAGYQSVLATAKKMKHKRLIGVIGVPGDRQDDIIIKVGQIAGQGFDKI 789

Query: 414 IVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I+ +D +PR   P ++ + +  G+          I     I A+  A+E+  + D++V+
Sbjct: 790 IIKEDADPRGRKPGEVASLLKKGVQAGGCSGKDVIIILKEINAVLKAVEIAERGDLVVI 848


>gi|20808924|ref|NP_624095.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|23821878|sp|Q8R749|MURC_THETN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|20517585|gb|AAM25699.1| UDP-N-acetylmuramate-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 460

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 137/424 (32%), Gaps = 47/424 (11%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++        PI+   +    L L   +      +  +AV G+ 
Sbjct: 67  GADLVVYTAAIHDDNVEYQKAKELGIPII---DRATLLGLIMKKY-----KFGVAVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I  R+G                    L       +   +    S+    
Sbjct: 119 GKTTTTSLISVILDRAGYDPTV---------------LVGGEIDAIGGNVRVGKSEYFVT 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            + E +   L                N+  DH+DY +       +  R F  L+P +   
Sbjct: 164 EACEYTDSFLK------FYPYIAVILNVDSDHLDYFKNIDNIKQS-FRQFASLVPSDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DDA +  V+K                                           F  
Sbjct: 217 VACKDDANTMHVIKGLEKNIVTYGINEKSDWQAKDITYDEKGCASFNVYYRGKFIGHFKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  +YNAL +  +   +G+D+    E++++      RFE  G    G  +  DYAH
Sbjct: 277 SIPGKHNIYNALASLAVTYLLGVDTEKAKEYIKEFKGTHRRFEVKGV-VEGVTVVDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               +   L+  +     RII +F       + K  ++   A     AD  I+TD     
Sbjct: 336 HPAEIHATLEAAKNYPHKRIIAIF-QPHTYSRTK-ALLSDFAESFDAADKIIITDIYAAR 393

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           E        + +   I       +   +    +    E   + D+++  G G+    I  
Sbjct: 394 EKDTGIVSSKDLVDLIFKRGKDVLYIKDFDSIVEYLKENTEEGDLVLTIGAGN----IYE 449

Query: 477 NGEK 480
            GEK
Sbjct: 450 VGEK 453


>gi|297544236|ref|YP_003676538.1| FolC bifunctional protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842011|gb|ADH60527.1| FolC bifunctional protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 427

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 131/397 (32%), Gaps = 37/397 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R+ LS   +    +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRRLLSYMGN---PQKSLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIY--------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
             +                   +   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 207 ---------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN     +    T   Y +               A I           
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQKGVVVSFY 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++       + +   +  ++ +     V          I    K  D    L GE Q+YN
Sbjct: 200 QQPEAMKVIIEACEVRNAYLTVLEKSNVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYN 259

Query: 315 ALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           A +A      + +     +   ++        PGR E +        + +D AH    + 
Sbjct: 260 AALAIESVEKLRMYGYEITKKDIKEGLYRAKWPGRLEVMRKKPY---VVIDGAHNPQGMT 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR 429
            + ++++     R+I+V G   D+D  K   M  I +  ADI I T   + R+    ++ 
Sbjct: 317 ALKESLKLFKYDRLILVIGMLKDKDTQK---MLDIIVPEADIIITTTPISERAYKASELA 373

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +I       I   N  +A++ A+++  ++D+++  G
Sbjct: 374 QKIDK--KNVIPIENIEKAVKYALDIAKEEDMVLFCG 408


>gi|126726615|ref|ZP_01742455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703944|gb|EBA03037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 474

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 147/459 (32%), Gaps = 54/459 (11%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            VS D+R I  G +FVA+  ++ DGH F+ QA+A GA A +V            +  + P
Sbjct: 26  GVSIDTRTIAKGDLFVALK-DQRDGHEFVAQALAAGASAALVD------HIPDNVAPDAP 78

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L+V N    L    +    +    ++AVTG+ GK+S    ++ +    G         +
Sbjct: 79  LLIVPNVLTALEALGTAARARTSAKVVAVTGSVGKTSTKEMLRVMLSTQGKCHAAEKSYN 138

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                          P+ LA+  +      +        +H  +   L  +         
Sbjct: 139 NHWGV----------PLTLARMPADADFAVIEIGM----NHPGEIGPLAKLTQPDIGLIT 184

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
                             +       L +   AI+  D   S  +M         +    
Sbjct: 185 TVAAVHLAAFDNIQGIAVEKSALFSGLTENGVAIVNGDLETSDVLMNA-AQGKTILRFGS 243

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
             G    L+ V    ++           F +    PG     NAL A     A+G D  L
Sbjct: 244 DAGFEFVLENVTVTEDQTMCQAQTNDSAFLYKISSPGRHFALNALGALASVSALGADMGL 303

Query: 332 VLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSL-----------EMILKN 375
               L +     GR      +    ++      +D A+ +N                + N
Sbjct: 304 AAVDLAQWVPFTGRGQKKIIQLDRGDASLTLTLIDDAYNANPTSVAAAIEILSVSNPIDN 363

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEII 433
           I  I  GR I V G   +    +  +   +A   ++A I +V    P       +   + 
Sbjct: 364 IGRIRKGRRIAVLGDMLELGTEEHQLHAGLAELKEIAKIDLVHCVGP-------LMKSLW 416

Query: 434 HGIPGFIE----KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +P        + +   A       L+  DV++V  KG
Sbjct: 417 SAVPNSKRGHWFETSSKLA-ELMKSQLDAGDVVLV--KG 452


>gi|254520318|ref|ZP_05132374.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914067|gb|EEH99268.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
          Length = 874

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 132/387 (34%), Gaps = 21/387 (5%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R       + LY   P N + V   +G +   +  + I        + +G TST   + 
Sbjct: 458 PRDIGKEIVNMLYNDRPYN-IPVISITGTNGKTTTTRVISHTLSKMGYCVGMTSTSGIYI 516

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            D  + +        A + L +  V    +E +  G+ +  L          TN+  DH+
Sbjct: 517 NDECIDSGDDTGFDSAKAVLLNHDVDVAVLETARGGMIKKGLAYDLADVAVITNIREDHL 576

Query: 218 DYH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-- 274
                           L  E + ++   ++ ADD +SK ++ R                 
Sbjct: 577 GIDGVDSMEELCYVKSLVGEAVKEDGYVVLNADDYWSKSILNRIKANIIFFSKDSNNPLL 636

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIA 324
           K   +  +        + +S +GK++               L    +   A+  A + + 
Sbjct: 637 KQSKISNISVYLENDDIVVSNKGKEYVICGIKEVPITLDGKLTFNIENILAICGALVGMG 696

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           I             L+       F   +  G  + +DY H  +    +L  ++ I SG +
Sbjct: 697 IDYCMIKNGITTYLLNSHKNSGRFNCYDINGINVILDYGHNIDGYNSVLSAVKEINSGML 756

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------P 437
             V G  GDR  G    +GKI+    D  IV +D + R     ++   I+ GI       
Sbjct: 757 YGVIGIPGDRTNGTAKEIGKISSKYLDYIIVKEDKDLRGRKQGEVAELIVDGITEDSDGK 816

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +    +  +A   A+ M  + D ++V
Sbjct: 817 KYEVILSEEDAFEKALNMAKRGDTVIV 843


>gi|167586015|ref|ZP_02378403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 292

 Score = 81.9 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
                         VS+DSR +  G +FVA+ G + D H F+    A+GA A +VS   +
Sbjct: 15  GATVHGDARVTFERVSTDSRTVGPGDLFVALKGERFDAHDFLADVAARGAAAALVSHTPA 74

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQ 138
                              TR  L   A     + P  ++AVTG++GK++V   +  I  
Sbjct: 75  GLAMPTIEGGE--------TRAALGALAHGWRKRFPLPVVAVTGSNGKTTVKEMIASIFA 126

Query: 139 R 139
            
Sbjct: 127 A 127


>gi|262276877|ref|ZP_06054670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
 gi|262223980|gb|EEY74439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
          Length = 443

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 138/381 (36%), Gaps = 26/381 (6%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPIL 93
            DSR ++   +F+ I G   DGH +    + +     I+         +   ++++  ++
Sbjct: 16  IDSRLVKENSVFLCIKGPNNDGHKYAKLVLDRFKRTIIICEKN---SIYLKNLKNSNRVI 72

Query: 94  VVDNTRKFLSLFAS-RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
             ++T+ FL   A  + Y  + +N + +TG+SGK+S+   +  +  +   S         
Sbjct: 73  FCNSTKDFLINLARIKRYLLNSKNFIGITGSSGKTSLKDLLFTVLNKYKKS--------Y 124

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            S  + +N +  P  +      S           +  ++ G      + +K      TN+
Sbjct: 125 KSQKSYNNNIGLPYTLVNQNINSE-----FNIYELGMNNFGEIDSLSNILKPNLAIITNI 179

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G  H+    + +    AK  + + +  + +  + + D  +  ++ K +     +VLS G 
Sbjct: 180 GEAHLGNLGSIKNIAKAKAEIIKNITKQGTIILNH-DCKFFNQLKKISKKNKIKVLSFGS 238

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K     KV +++   ++ I +    F           + N LV   +     ++    
Sbjct: 239 TSKATVSYKVISLN---EIEIKLNNLKFKLKLNDINPNMINNMLVCILVLSFFKLNIRKS 295

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG- 391
             +  K+    GR   V        I   Y    +SL+  +     +++ +  ++     
Sbjct: 296 KNYFNKIKNTRGRGNIVKFRKEIIIIDDSYNSNPSSLKSSINQFEKLSTKKKKILVIGDM 355

Query: 392 ---GDRDQGKRPIMGKIALDL 409
              G   + K   +G     +
Sbjct: 356 LELGKFSKKKHGEIGNYLSKM 376


>gi|39998159|ref|NP_954110.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sulfurreducens
           PCA]
 gi|48428299|sp|P61679|MURC_GEOSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39985105|gb|AAR36460.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens PCA]
          Length = 462

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 130/408 (31%), Gaps = 39/408 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV+S     D    + +   ++ V    + L+      YG      +A+ GT GK++  
Sbjct: 67  VVVTSTAVRDDNPEVVEAKRRMIPVIPRAEMLAELMRMKYG------IAIAGTHGKTTTT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  +    G+    +     +++   + +L                           +
Sbjct: 121 SMVATVLTHGGIDPTIV-IGGKLNTLGTNAKLGQG--------------------QFLVA 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +       TN+  DH+D++             F   +P    A++  +D
Sbjct: 160 EADESDGSFLKLSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLED 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               E++ R                     ++        V      +  +  F +PG  
Sbjct: 220 RNIAEILPRVKKRFVTYGLSSQADIRATHIRLEG-GTTSFVAHYKGYRMGEVSFSMPGAH 278

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    + + + +  + + E       V  RF+  G    G  +  DY H    + 
Sbjct: 279 NVLNALACIAVAMELDVPFSQIQEGFATFGGVGRRFQVKG-EVNGITVVDDYGHHPAEIR 337

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP--- 425
             L   ++    R +VV      R    R +  +       AD+ ++TD  P  E P   
Sbjct: 338 ATLAAGKSGWPERRLVV-AFQPHRFSRTRELFAEFVTCFYDADVLVLTDIYPAGEAPIEG 396

Query: 426 ---EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E++  EI   G        +R       + ++   D+++  G G+
Sbjct: 397 VSAERLAEEIRKHGQRDVTYVADREALPEHLLTIVQPGDIVLTLGAGN 444


>gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl]
 gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl]
          Length = 816

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             ELI                + S DSR   AG  F+A+   + DGH +IP A+A GA  
Sbjct: 5   LAELIEAGGTVIGPIHADTFTDWSYDSRLTVAGECFIALRTTRADGHDYIPAALAAGARG 64

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           I+ +                 ++V  + +  L  +AS    +    ++AVTG  GK+
Sbjct: 65  ILCTR-------PPHDAGTATVVVCPDPQALLLRWASNRLQRLQPTVIAVTGGIGKT 114


>gi|297545530|ref|YP_003677832.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843305|gb|ADH61821.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 464

 Score = 81.5 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 128/413 (30%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N P +   +    L L   +      +  +AV+G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTI---DRATLLGLIMKKY-----KYGIAVSGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I    G     +     +     + R+               S      
Sbjct: 119 GKTTTTSLISVIFNGMGYDPTVL-VGGEVDVIGGNVRVGNSEYFVTEACEYTDSFLKFY- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFASLVPPDGYV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DDA +  V+   +                                  E    +F  
Sbjct: 217 VACKDDANTMYVVNGLNKNIVTYGIYKDSDWKAKNIGFDDKGCAIFDVYYKEEYMGNFKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  DYAH
Sbjct: 277 SIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKG-IVDGITIVDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               ++  L+  +     RII +F       + K  ++ + A     AD  I+ D     
Sbjct: 336 HPAEIKATLEAAKNYPHKRIICIF-QPHTYSRTK-ALLNEFAESFDNADKIIIADIYAAR 393

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E        + +   I       +   +    +    +     D+++  G G+
Sbjct: 394 EKDTGIVSSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKAGDLVLTIGAGN 446


>gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010]
 gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010]
          Length = 826

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 140/383 (36%), Gaps = 24/383 (6%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             ++   +        E  I+ + +DSR +      +F A+   + DG+ +IP+  ++G 
Sbjct: 5   IEKVATLVGACRYGNVETNISFLLTDSRSLCFPEETLFFALKSERNDGYHYIPELYSRGV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VV +     D      +    L V  T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVEAIPENWDMLYPQSN---FLEVSKTIEALQRLATCHRAEFHVPVIGITGSNGKTV 121

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  ++ Q+   + + +         S  + ++++  P  ++L           V      
Sbjct: 122 VKEWLYQLLSPNKVVT--------RSPRSYNSQIGVPLSVWL-----LNEQTEVGVFEAG 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S  G  +   + I+   G FT+LG  H +   + +     K+ LF       +      
Sbjct: 169 ISERGEMKALREIIQPTIGVFTSLGEAHQENFASLEEKCMEKLCLFR---DTNAIVYPLD 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLP 307
           ++   + +    +       S       + +K++        +T   +  K+  +  P  
Sbjct: 226 EELVVRCIKTLNYKNTILGWSKKDSNATLFVKEIKKAELTTTITYVWQQGKEASYTIPFI 285

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH--T 365
            +  V N++ +A +C+ +G++   + E + +L  V  R E          I   Y     
Sbjct: 286 DDASVENSITSAIICLHLGVEVKTLAERMPQLEPVAMRLEVKEGQHGCTLINDSYNSDFN 345

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
           S  + +   N R    GR   + 
Sbjct: 346 SLDIALDFMNRRPDHKGRKRTLI 368


>gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
 gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
          Length = 846

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 118/374 (31%), Gaps = 36/374 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   +  I+ + +DSR +      +F A+   +  G  +IP    +G 
Sbjct: 5   IESIAKSIGARRVGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN-----------------TPILVVDNTRKFLSLFASRLY 110
              ++    +   +       +                    L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  +  
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIV--------RSPRSYNSQIGVPLSV-- 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                      +       S  G        IK   G  TN+G  H +   + Q     K
Sbjct: 175 ---WQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + LF+     +       ++  S  V K    A     S     + +++ +V    +   
Sbjct: 232 LTLFK---DCDVVIYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTV 288

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++      D  F  P   +  + NAL     C+ +   +  + E + +L  +  R E   
Sbjct: 289 ISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKE 348

Query: 351 TNSRGGRIYVDYAH 364
             +    I   Y  
Sbjct: 349 GKNNCVLINDSYNS 362


>gi|297559869|ref|YP_003678843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844317|gb|ADH66337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 482

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 101/494 (20%), Positives = 168/494 (34%), Gaps = 65/494 (13%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L      E+  Q +I      E  ++  V  DSR    G +FVA+ G + DGH F   A+
Sbjct: 4   LTLDRIAEI-TQTAIGGSARPEAVVDGPVVIDSRQAVPGALFVALGGERVDGHDFAASAV 62

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--------EN 116
           A GA A +VS         A       +         L+  A  +  +            
Sbjct: 63  ADGAAAALVSRPVDAPHLLAEGGDEGVV-------AALTRLARHVARELSDPRRGAERAE 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG+SGK++    + Q+  R G +    G  +               P+ +      
Sbjct: 116 VVAVTGSSGKTTTKDLIAQVVARMGPTVAPAGSFNNEIGH----------PLTV-----L 160

Query: 177 LSSQGVTHVSVEASSHGL-DQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAK---- 230
            +  G  ++ +EA++ G+     L G+     G   N+G  H+     + A   AK    
Sbjct: 161 RADTGTRYLVLEAAARGIGHIAHLCGVAPPRIGVVLNVGSAHMGEFGDRDAIAKAKGELV 220

Query: 231 --MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
             +            A++ ADD     +  R          +G          V      
Sbjct: 221 EALPPGAADRGAGGVAVLNADDPRVNAMAARTRAR-VVTYGLGEDATVRATDVVMRETGA 279

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFE 347
              T+ + G+       L G  QV+NAL AA +   +G+    + E L     V   R E
Sbjct: 280 PSFTLHLAGRTARVELALVGAHQVHNALAAAAVADELGMGVDEIAEALGAATPVSRWRME 339

Query: 348 FVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQG---KRPIM 402
                  G  +  D Y     S+   L  +  +    R I V     +  +G   +   +
Sbjct: 340 VT--EHAGATLVNDAYNANPESMRAALTTLGALARDRRSIAVLAHMAELGEGGGVEHERI 397

Query: 403 GKIALD--LADIAIVTDDNPRSEDPEKIR----AEIIHGI--PGFIEKGNRIEAIRTAIE 454
           G++A    +A + +V       E  E I          G+     +   +  EA      
Sbjct: 398 GELAARTGVAHLVVV------GEAAEGIAVGAEGAARQGLWQGECVRVADVHEAAAAVRA 451

Query: 455 MLNKQDVLVVAGKG 468
            +   DV++V  KG
Sbjct: 452 RMRTGDVVIV--KG 463


>gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A]
          Length = 846

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 118/374 (31%), Gaps = 36/374 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   +  I+ + +DSR +      +F A+   +  G  +IP    +G 
Sbjct: 5   IESIAKSIGARRVGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN-----------------TPILVVDNTRKFLSLFASRLY 110
              ++    +   +       +                    L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  +  
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIV--------RSPRSYNSQIGVPLSV-- 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                      +       S  G        IK   G  TN+G  H +   + Q     K
Sbjct: 175 ---WQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + LF+     +       ++  S  V K    A     S     + +++ +V    +   
Sbjct: 232 LTLFK---DCDVVIYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTV 288

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++      D  F  P   +  + NAL     C+ +   +  + E + +L  +  R E   
Sbjct: 289 ISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKE 348

Query: 351 TNSRGGRIYVDYAH 364
             +    I   Y  
Sbjct: 349 GKNNCVLINDSYNS 362


>gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
 gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
          Length = 846

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 118/374 (31%), Gaps = 36/374 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   +  I+ + +DSR +      +F A+   +  G  +IP    +G 
Sbjct: 5   IESIAKSIGARRVGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN-----------------TPILVVDNTRKFLSLFASRLY 110
              ++    +   +       +                    L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  +  
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIV--------RSPRSYNSQIGVPLSV-- 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                      +       S  G        IK   G  TN+G  H +   + Q     K
Sbjct: 175 ---WQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + LF+     +       ++  S  V K    A     S     + +++ +V    +   
Sbjct: 232 LTLFK---DCDVVIYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTV 288

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++      D  F  P   +  + NAL     C+ +   +  + E + +L  +  R E   
Sbjct: 289 ISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKE 348

Query: 351 TNSRGGRIYVDYAH 364
             +    I   Y  
Sbjct: 349 GKNNCVLINDSYNS 362


>gi|323705831|ref|ZP_08117403.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534827|gb|EGB24606.1| cyanophycin synthetase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 875

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 136/389 (34%), Gaps = 24/389 (6%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +  K +         K    I++VTGT+GK++    +  I +  G +             
Sbjct: 460 DVAKAIIDMLYPKGSKATIPIISVTGTNGKTTTVRMISHILKIYGYTVGMTSTDGIYVDD 519

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
               +     P      L+  +        +E +  G+ +  L       G  TN+  DH
Sbjct: 520 VCIYKGDNSGPKSARTCLADKNIDA---AVLETARGGIVREGLGYDLADIGIITNISEDH 576

Query: 217 IDYHQTQQAYFNAK-MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-- 273
           +     +     A    L  E + K+  +++ ADD  +  + KRA               
Sbjct: 577 LGIDGIETLEDLAFVKSLVVEAVKKDGYSVLNADDPMTPYIAKRAKGKIIYFSMHENNLT 636

Query: 274 --------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                   G  ++LK    +    ++   V+  +          + V NA+ +   C  I
Sbjct: 637 IKRHLENGGISVYLKDDTIVIANGEIIPIVKVDEIPATLNGKVLYNVENAMASISACYGI 696

Query: 326 GIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            I   ++   +   +         F   N    R+ VDY H  + ++ ++++ R +   R
Sbjct: 697 KIPVNVISRGIRSFYCDENHNPGRFNIFNIGSFRVLVDYGHNIDGIKKVIESARKLNPNR 756

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------ 436
           +I V G  GDR       +G+I  +  D   + +D + R   P ++   +  G+      
Sbjct: 757 LIGVIGVPGDRSDSSTLKVGEICGEGFDKVYIKEDLDLRGRKPGEVAKLLEIGVLKGGLS 816

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     ++A++ A+      D++V+
Sbjct: 817 KEDVKVILKEVDALKAAMYEAMPGDLIVI 845


>gi|226320606|ref|ZP_03796166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
 gi|226234025|gb|EEH32746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
          Length = 339

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 11/156 (7%)

Query: 2   KLQDLI-YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ----AGWIFVAIVGNKEDG 56
           K++D++      + +  +        ER ++  S DSR I+       ++ A  GNK DG
Sbjct: 4   KIKDILISSKDVKFVGNIKNI-----ERVVSFYSLDSREIKDDNINDSLYFAYKGNKVDG 58

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
             F+   I  G +    S  +  +             L+  N  K L   AS L  K   
Sbjct: 59  FSFVKYLIDLGVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSF 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
             +A+TG++GK++    +  I  +   +    G  +
Sbjct: 119 KRIAITGSNGKTTTKEMLYSILSKKYKTYKTWGNLN 154


>gi|289577961|ref|YP_003476588.1| FolC bifunctional protein [Thermoanaerobacter italicus Ab9]
 gi|289527674|gb|ADD02026.1| FolC bifunctional protein [Thermoanaerobacter italicus Ab9]
          Length = 427

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 131/397 (32%), Gaps = 37/397 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R+ LS   +    +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRRLLSYMGN---PQKSLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIY--------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
             +                   +   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISKMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 207 ---------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN     +    T   Y +               A I           
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQKGVVVSFY 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++       + +   +  ++ +     V          I    K  D    L GE Q+YN
Sbjct: 200 QQPEAMKVIIEACEVRNAYLTVLEKSNVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYN 259

Query: 315 ALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           A +A      + +     +   ++        PGR E +        + +D AH    + 
Sbjct: 260 AALAIESVEKLRMYGYEITEKDIKEGLYRAKWPGRLEVMRKKPY---LVIDGAHNPQGMT 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR 429
           ++ ++++     ++I+V G   D+D  K   M  I +  ADI I T   + R+    ++ 
Sbjct: 317 VLKESLKLFKYDKLILVIGMLKDKDTQK---MLNIIVPEADIIITTTPLSERAYKASELA 373

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I       I   N  +A++ A+++  ++D+++  G
Sbjct: 374 ERIEK--EKVIAIENIEKAVKYALDIAKEEDMVLFCG 408


>gi|75675240|ref|YP_317661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420110|gb|ABA04309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 144/451 (31%), Gaps = 39/451 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +  G  + AI G+  DGH F+  A+  GA   VV +A   Q         
Sbjct: 28  ITGISIDSRTVAPGEAYFAIKGDVHDGHAFVGAALKAGAALAVVEAARRDQ-----FALE 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P+LVVD+    L   A     +    ++AVTG+ GK+S    ++ +    G +   +  
Sbjct: 83  LPLLVVDDVLAALRDLARASRARLAAQVIAVTGSVGKTSTKEALRGVLGAQGKTHVSVAS 142

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +                                   +  +  G     +  ++      
Sbjct: 143 FNNHWGVPLSLSRCPADA-------------RFAVFEIGMNHAGEITPLVKMVRPHVAII 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA-IIYADDAYSKEVMKRAHNAGCRVL 268
           T +   H+++    +A  +AK  +FE + P  +             +   R       V 
Sbjct: 190 TTVEPVHLEFFSGVEAIADAKAEIFEGVEPDGAVVLNRDNAQFARLQECARKLGIAKIVT 249

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
               +     L  +        V   + G +  +   +PG     N+L         G D
Sbjct: 250 FGADEKADARLLDLALHPAGSAVHAEILGSELTYKLGMPGRHMAMNSLAVLAAASLAGAD 309

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTIT---SG 382
            AL    L +     GR        RGG   +    Y     S+   L  +        G
Sbjct: 310 LALAGLALSQAQPAAGRGVRRALAVRGGEALLIDESYNANPASMAAALNVLGEAKVGTQG 369

Query: 383 RIIVVFGCG---GDRDQG-KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           R I V G     G R     R + G I  +  D+        R+     +   +  G  G
Sbjct: 370 RRIAVLGDMLELGPRSADLHRDLTGAIDANDVDMIFCCGPLMRN-----LWNALSSGRRG 424

Query: 439 FIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
              +     A+ + +       DV++V  KG
Sbjct: 425 GYAED--AAALESQVTAAIRSGDVIMV--KG 451


>gi|99034316|ref|ZP_01314355.1| hypothetical protein Wendoof_01000846 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 264

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 58/274 (21%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKE------ 54
           MKL++L++                  + +I  V+ +   ++ G++FV +           
Sbjct: 1   MKLRELLHNII-----------DVNFDIEIKGVTCNPNRVKEGYLFVCVSAVSFQRVTLE 49

Query: 55  ----------------DGHLFIPQAI---AQGAEAIV--VSSAYSLQDFSATIRSNTPIL 93
                             H  +   I    +    ++  +     + +       N   +
Sbjct: 50  SRKPACIQIFLTESQYHAHDCVDVVIQGTKKDVIPVLDYLDPENLIANEHTKQLHNKNWI 109

Query: 94  VV----------------DNTRKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQI 136
            V                 N ++      SR Y  K P+ + AVTGT+GK+SV  F +QI
Sbjct: 110 PVSATCMTNTPSFAVLDHPNPQEIYREIVSRFYQFKQPKYVAAVTGTNGKTSVVEFCRQI 169

Query: 137 CQRSGLSSFQIGPTSTISSFAQD---NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            Q SG ++  IG   T  +  ++   + LTTP    L   L  ++S+ V  +++EASSHG
Sbjct: 170 WQNSGYNAASIGTLGTCINNDREDNSDNLTTPGADDLYSTLCGINSKNVEQLALEASSHG 229

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           +DQ+R+ G++  A +FTN  +DH+DYH++   YF
Sbjct: 230 IDQYRIHGLRFTAAAFTNFSQDHLDYHKSIDEYF 263


>gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4]
 gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4]
          Length = 819

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 128/368 (34%), Gaps = 35/368 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRH----IQAGWIFVAIVGNKEDG 56
           MKL         ++   +          +IN + +DSR     ++   +F AI   + +G
Sbjct: 1   MKL--------NKIAQIVGANDSNVPSVEINWLLTDSRSLSFPVE--SLFFAIHTARNNG 50

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H +I +   Q     VVS             ++   L V+++ K L   A          
Sbjct: 51  HNYIAELYQQNLRYFVVSE----MHPEFEKMTDAVFLKVEDSLKALQALAVAHRNAFDIP 106

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++ +TG++GK+ V  ++ Q+     + +         S  + ++++  P  +      + 
Sbjct: 107 VIGITGSNGKTVVKEWLYQLLHTDYVIT--------RSPRSYNSQIGVPLSV-----WAL 153

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             S  +       S     +     I+   G FTNLG  H +     +     K++LF+ 
Sbjct: 154 SESTQLGIFEAGISEPHEMKRLQPIIRPTIGIFTNLGDAHQENFSGLKQKCEEKLQLFD- 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              +    +  +D+   +  + ++   G            + + +     +  +V +   
Sbjct: 213 ---QSEVLVYCSDNKLVEISIAQSAFKGVFFSWGKSDKATVQIVQKEKTVSSTKVVLKYN 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +     P   +  + NAL    + + +G+ +A + + +  L  V  R E         
Sbjct: 270 AVESSVTIPFTDDASIENALQCVAVMLYLGLKTAEIAKRILLLEAVAMRLEVKEGVRDCL 329

Query: 357 RIYVDYAH 364
            I   Y  
Sbjct: 330 IINDSYNS 337


>gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 813

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 134/391 (34%), Gaps = 40/391 (10%)

Query: 10  DFPELINQLSIFPMQWRERKIN--EVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIA 65
              E+ + +        + K++   +  DSR I  +   +F A  G ++DGHL+I  A  
Sbjct: 3   TISEIQDIIKPRRSYLADTKVSIHYLLYDSRKIAHEKLGVFFAFTG-RQDGHLYIQDAYN 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    V+      +        +  IL V N+   L   A     +    ++ +TG++G
Sbjct: 62  KGVRNFVLEKDAEQE----VQMPDANILWVANSWTALQSLAKHNRSQFQGPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+                     +     +P        ++          
Sbjct: 118 KTIVKEWLFQLMS------------------PEYKIYRSPKSYNSQLGVALSLWDLSNQY 159

Query: 186 SVEASSHGL----DQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           ++     G+    +  RL+  IK   G  TN+G  H     ++      K+RLF++    
Sbjct: 160 NLAIIEAGISHVGEMDRLEAMIKPTYGVLTNIGIAHQQGFASKLEKTEEKLRLFKD---- 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A      A   E ++  +             +            +  VT+   GK F
Sbjct: 216 ---AETLIYPAKYLEAVQIPYKPRKLSWGEEEDNQLEVYSIRKPEDGETYVTLYYGGKTF 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P      + NA+    + +  G D+AL+ E +  L  V  R E     +    I  
Sbjct: 273 GISVPFTDSAAMENAITCVAVMLRFGYDTALIAERIRNLLPVEMRLELKNGKNNTSVIDD 332

Query: 361 DYAHTSNSLEMILKNI-RTITSGRIIVVFGC 390
            Y++   SL++ L  + +       I++   
Sbjct: 333 SYSNDLVSLQIALDFLNQQHQHTNSILILSD 363


>gi|313680159|ref|YP_004057898.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Oceanithermus profundus DSM 14977]
 gi|313152874|gb|ADR36725.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oceanithermus profundus DSM 14977]
          Length = 417

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 16/137 (11%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
            ++  DSR ++ G  FVA+ G +  G  +   A+A+GA  ++   A              
Sbjct: 19  RDLVWDSRAVEPGAAFVALPGTRTHGEAYAEDALARGAALVIGPQARDRG---------- 68

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L VD+  + L      L    P  +  V+G+ GK+S    + +            G  
Sbjct: 69  --LQVDDPYRALLRLGRWLRTGFPGVVAGVSGSVGKTSTKEALARALDWP----ATEGNL 122

Query: 151 STISSFAQDNRLTTPSP 167
           +T  +  +     +P  
Sbjct: 123 NTPPALTRFFWHLSPDA 139


>gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK330]
          Length = 456

 Score = 80.7 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 130/425 (30%), Gaps = 53/425 (12%)

Query: 1   MKLQDLIYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           MKL      D  E+   L       Q+    +     DSR I++G +FV + G + DGH 
Sbjct: 1   MKL------DLYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHD 53

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           FI              +  +    S    +    ++VD+        A     K   ++L
Sbjct: 54  FIAT----------AFAQGAAATLSERPVAEGTYILVDDVLTSFLRLAQYYLEKMQVDVL 103

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GK++    + Q+   +  +    G  +                  L        
Sbjct: 104 AVTGSNGKTTTKDMLAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKL-------- 155

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E     L    L        +                    A+ ++     
Sbjct: 156 -------VLEMGQDHLGDIHLLSELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADG 208

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            ++   +I   D    E +                G    +        K  ++      
Sbjct: 209 LRKDGLLIVPADKIVNEFLPADCKLV-------RFGPDADIFLTRLEERKDSLSFECNFL 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +     P+ G++   NA++AA   +  GI  A + +   +L +   R E+    +    +
Sbjct: 262 EQRIDLPVTGKYNATNAMIAAYAALQEGISEAAIAQAFSELELTRNRTEWKKAGNGADIL 321

Query: 359 YVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              Y     ++ +IL+   TI +   GR + V     +     + + G +         +
Sbjct: 322 SDVYNANPTAMRLILETFSTIPTNLGGRKLAVLADMKELGADSKSMHGSM---------I 372

Query: 416 TDDNP 420
           T  NP
Sbjct: 373 TSLNP 377


>gi|255536320|ref|YP_003096691.1| Cyanophycin synthase [Flavobacteriaceae bacterium 3519-10]
 gi|255342516|gb|ACU08629.1| Cyanophycin synthase [Flavobacteriaceae bacterium 3519-10]
          Length = 773

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 63/401 (15%), Positives = 128/401 (31%), Gaps = 28/401 (6%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           +R   +     L+    E+ + +   +G +   +  + +        +  G T+T   + 
Sbjct: 359 SRNVAAAVVDMLFPPQSESRIPIFAVTGTNGKTTTTRILAHLVQSCGYFPGYTTTDGIYI 418

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
             +++ +      + A + L+   V    +E +  GL +  L          TN+  DH+
Sbjct: 419 GGHQIASGDCSGPSSASTVLADPMVDFAVLETARGGLLRAGLAFDYCDVAVLTNIAADHL 478

Query: 218 D-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
              +                 +     AI+ A+D +  ++ ++                 
Sbjct: 479 GLKNINTLEELAEVKAAVVRSVKNTGWAILNAEDFHCNKIAEKLDCNIGFFSLDNSNAVI 538

Query: 277 IHL-----------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                              IH  +  T     KD         +    N L A     + 
Sbjct: 539 KKHIANGGLATTVEDGNLVIHQGKNRTFIAGIKDIPLTINGTSKCMTANILAATAAAFSY 598

Query: 326 GIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           G     + + L          PGR  +         + VDYAH  + L  +   +  I +
Sbjct: 599 GFTPVQIHDALMSFVPGPELTPGRMNYFKVR--DFSVLVDYAHNPHGLRAMQDYLTHIKA 656

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIP--- 437
            R + +    GDR       + +IA ++ D  IV  ++  R  +  ++   ++ GI    
Sbjct: 657 PRKVGIIAAVGDRRDSDIVELAEIAGNMFDHIIVRQEHSLRGRELSEMNKLMVQGIEKAG 716

Query: 438 ---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
               +    +  EAIR A++   K D +V      +    V
Sbjct: 717 RAVKYDLIPDEKEAIRHALDTAQKDDYIVAL---SDNYQEV 754


>gi|289579389|ref|YP_003478016.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
 gi|289529102|gb|ADD03454.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
          Length = 464

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 135/434 (31%), Gaps = 47/434 (10%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N P +   +    L L   +      +  +AV+G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTI---DRATLLGLIMKKY-----KYGIAVSGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I    G     +     +     + R+               S      
Sbjct: 119 GKTTTTSLISVIFDGMGYDPTVL-VGGEVDVIGGNVRVGNSEYFVTEACEYTDSFLKFY- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFASLVPPDGYV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DDA +  V+   +                   +              E    +F  
Sbjct: 217 VACKDDANTMYVVNGLNKNIVTYGIYEDSDWKAKNIRFDDKGCAIFDVYYKEEYMGNFKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  DYAH
Sbjct: 277 SIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKG-IVDGITIVDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               ++  L+  +     RII +F       + K  ++ + A     AD  I+ D     
Sbjct: 336 HPAEIKATLEAAKNYPHKRIICIF-QPHTYSRTK-ALLNEFAESFDNADKIIIADIYAAR 393

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
           E        + +   I       +   +    +    +     D+++  G G+    I  
Sbjct: 394 EKDTGIVSSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKAGDLVLTIGAGN----IYE 449

Query: 477 NGEKKMSVDCDIIR 490
            GE  +      +R
Sbjct: 450 VGEMFLKDYKKAVR 463


>gi|309811809|ref|ZP_07705583.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
 gi|308434230|gb|EFP58088.1| cyanophycin synthase (L-aspartate-adding) [Dermacoccus sp.
           Ellin185]
          Length = 944

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 127/390 (32%), Gaps = 46/390 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ +  +  I +  G      G TST      +  L T        A   L
Sbjct: 503 VAVTGTNGKTTTSRMLAHIMKGLGKKV---GMTSTDGIVIDERLLITRDASGPKSAKMVL 559

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEE 236
            +  V    +E +  G+ +  L   +      TN+  DH+               ++  E
Sbjct: 560 QNPRVDFAVLEVARGGILREGLGYDRNDIAVVTNIQSDHLGMRGINSLEDLANVKQVIVE 619

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---------VCAIHN 287
            +P++  A++ ADD Y + + +                +               V     
Sbjct: 620 AVPRDGFAVLNADDEYVRRMRRVCRGTIVWFSMEAPGSRVRQFIDERCVRGDRAVVLEPT 679

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +   I ++                     A          +         LH +     
Sbjct: 680 DKGEMIVLKQGRRSMQLAWTHLLPSTFNGAARMNVANALAAAGAAFAAGAPLHDIRQGLR 739

Query: 348 FVGTNSR------------GGRIYVDYAHTSNSLEMILKNIRTITSGRI-------IVVF 388
              T+                 ++VDY H    L+++ + +    +G+        IVV 
Sbjct: 740 TFTTSYYLSPGRLNRIEVDHAEVFVDYCHNPAGLQLLGEFVDRYVAGKNKSTRVQRIVVV 799

Query: 389 GCGGDR-DQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFI------ 440
           G  GDR DQ  R  MG++A    D  I+  DDN R   P +  A +  G    I      
Sbjct: 800 GAAGDRRDQDIR-EMGELAAKWFDHVIIREDDNLRRRAPGETAALVAEGAQQAIDSGEAR 858

Query: 441 -----EKGNRIEAIRTAIEMLNKQDVLVVA 465
                   + +EA + AI+     D++V+ 
Sbjct: 859 AASVETVLDELEATQVAIDSARAGDLVVIC 888


>gi|56459545|ref|YP_154826.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
 gi|62900480|sp|Q5R0M3|MURD_IDILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56178555|gb|AAV81277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
          Length = 463

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 137/398 (34%), Gaps = 47/398 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S    L++    +  +  I +V +   F               I+AVTG++GKS
Sbjct: 80  ADLIIASPGIDLREDPVVLARDADIPIVGDVELFAQE--------SKLPIVAVTGSNGKS 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V+ + ++ G +    G                P  +                  +
Sbjct: 132 TVTRMVEFVAKQCGKNVAAAGNIGVPVLDLLLQEQH-PDAV-----------------IL 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +  +KL A +  N+  DH+D + T   Y  AK R+F             
Sbjct: 174 ELSSFQLES--VSSLKLKAAALMNISADHMDRYCTLDEYVKAKQRIFTHAKTWILNRQQQ 231

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               +                  G          +  +     VT             L 
Sbjct: 232 DTWPHPVTGKLMTFGNDSHPKHFGLLSG-----NIDRVSGPVAVTFDGSVVLRADQLQLQ 286

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N   A  LC AI ID    +  +++   +P R E V  N     +    A    
Sbjct: 287 GIHNLVNVQAALALCQAIDIDIEAAVRAVKEFKGLPHRCELVSDNEGVLWVNDSKATNIG 346

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPE 426
           +    ++ +R + +GR++++ G  G +    R +  +  L+  DI + + +D PR     
Sbjct: 347 ATAAAVEGLRPMINGRLLLIAGGVG-KGADFREL--QSTLERVDILLTIGEDGPR----- 398

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                I     G  +  +  +A+  A  ++   D++++
Sbjct: 399 -----IGQLFNGSRQVKSLQQAVELAASLVQTGDMVLL 431


>gi|319789776|ref|YP_004151409.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
 gi|317114278|gb|ADU96768.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
          Length = 446

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 136/413 (32%), Gaps = 49/413 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRS--NTPIL----VVDNTRKFLSLFASRLYGKHPENILA 119
           +GA+ ++ SSA    +           P++    VV +  +              +  +A
Sbjct: 58  KGADVVIHSSAVKPSNPEIVEAKKLGIPVIPRADVVSDIMRL-------------KEGIA 104

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ +S +  I   +G S   +           +  L +   I +    S    
Sbjct: 105 VGGTHGKTTTSSMIATILHSAGTSPTILVGGRLPFLGGDNAALGSGKWIVIEADESD--- 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                 +       TN+  DH+D++ + +    A       +  
Sbjct: 162 -----------------GTFLKLTPTLSVITNVDNDHLDFYGSPEEIDKAFTAFANRVAF 204

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +          V K +     R  + G++G     ++V  +      T+  +GK 
Sbjct: 205 YGKVFLCIE----CPRVRKISPKVYKRKETYGFEGADFTAEEVTQVGLSSIFTVRYKGKK 260

Query: 300 F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  +PG+  V NAL A  + +  G+      E L +      R E  G   +G   
Sbjct: 261 LGKVRLNVPGKHNVLNALGAIAVALETGVPFKEAAEALGQFRNASRRMELKG-TVKGITF 319

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVT 416
           + DY H    ++   + I++    R +VV        + K       +      +   + 
Sbjct: 320 FDDYGHHPTEIKASYEAIKSAFPNRRVVVLFQPHRFSRTKLLWREFVETL-KGFENLFLC 378

Query: 417 DDNPRSEDP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  P  E+P E I +  +      +  G   EA +   ++L   DV +  G G
Sbjct: 379 DIYPAGEEPIEGIDSRKLASECKAVYAGGLEEACKLMAKVLRPGDVFLSLGAG 431


>gi|309806966|ref|ZP_07700948.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166586|gb|EFO68783.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 198

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 17/198 (8%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+Q        E+ N +           ++ V  DSR   A  +FV +VG + DGH ++
Sbjct: 1   MKMQ------LSEIANAIGCDLSMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYV 53

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+A GA A +    ++ +        N P+LVVD+T   L   A     K    ++ +
Sbjct: 54  ANAVANGAVAALWQKDHANR------PENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGI 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPSPIYLAKALSY 176
           TG++GK++    V  +  +                   +  +    T    + +    + 
Sbjct: 108 TGSNGKTTTKDMVAAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAG 167

Query: 177 LSSQGVTHVSVEASSHGL 194
                   V  +     +
Sbjct: 168 QLHHLSEIVCPDVCVITM 185


>gi|258593035|emb|CBE69346.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [NC10
           bacterium 'Dutch sediment']
          Length = 475

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 145/425 (34%), Gaps = 51/425 (12%)

Query: 56  GHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + +A       +VV S+    +    + +    + V    + L+      YG  
Sbjct: 56  GHDPAHVQEAD------VVVRSSAVSPENPEIVAAKAHAIPVIQRAEMLAELMRMKYG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S V  +  ++GL    +     + +   + +L           
Sbjct: 108 ----VAVAGTHGKTTTTSMVATVLAKAGLDPTVV-IGGRLDALGSNAKLGRGE------- 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           +           +       T +  +H+DY++  Q         
Sbjct: 156 -------------FMVAEADESDGSFLKLAPTIAVVTTVDAEHLDYYRDLQQIK-ETFLE 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P    AI+  D  + ++++                        +  + +  +V  
Sbjct: 202 FINKVPFYGSAILCLDQEHIRDLLPMVQKRVVSYGCHTQADLMAEGVSLTGLSSTFKVRF 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             E    +    +PG   V NAL A  + + + I+ A +   L +   V  RF+  G + 
Sbjct: 262 KGEP-LGEVQLRIPGVHNVSNALAAMAVGLELDIEFAAIRTALGEFSGVVRRFQVKG-SP 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
           +   +  DYAH    ++  LK  R     R+IV+F       + +R  P     A D AD
Sbjct: 320 QDIMVVDDYAHHPAEIQATLKAARDGFGRRLIVIF-QPHRYSRTQRLLPEFAS-AFDFAD 377

Query: 412 IAIVTDDNPRSEDPEKIR--AEIIHGI-----PGFIEKGNRIEAI-RTAIEMLNKQDVLV 463
             I+T   P  E P       +I  G+     P  +    R E I    IE+    D+++
Sbjct: 378 QVIITGIYPAGETPIAGVSGRQIADGVVVRKGPKVLYVE-RKEEIPDRVIELARPGDLVI 436

Query: 464 VAGKG 468
             G G
Sbjct: 437 TMGAG 441


>gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 817

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 119/340 (35%), Gaps = 29/340 (8%)

Query: 33  VSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +S DSR +Q     +F A+VG   D H++I   I++G +  VV            +    
Sbjct: 31  ISIDSRSLQNNENTLFFALVGPNNDAHIYIGDLISKGVKNFVV------TYIPKRLTGKA 84

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             L+V NT   L +FA          I+ +TG++GK+ V  ++  +              
Sbjct: 85  NFLIVKNTLVALQIFARYYRNLFHFPIIGITGSNGKTIVKEWLNFLLSPDYNI------- 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              S  + ++++  P  +     ++   +  +       S+    ++    I+   G  T
Sbjct: 138 -IRSPKSYNSQVGVPLSV-----IAINENHNLGIFEAGISTKDEMENLQKIIQPTIGILT 191

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+G  H +           K++L          A+       +K +    +         
Sbjct: 192 NIGTAHDEGFADISEKIKEKLKL--------FTAVEVLILNKNKTIETFINKEINTFTWS 243

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                     +   +++   + I+ +GK F    P   E  + N++    + + +  D  
Sbjct: 244 TNDQSADVFFQKKTLNDHALLNITNQGKYFKIKIPFIDEASLENSMHCILVMLYLKYDLD 303

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +   + +L  V  R +     +    I   Y+    SL+
Sbjct: 304 TIKHRISQLFPVEMRLKVKNGINNCTLIDDSYSSDFQSLK 343


>gi|311029924|ref|ZP_07708014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. m3-13]
          Length = 57

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +R  AI  AI+     DV+++AGKGHET  ++ +   +   D  I  E +
Sbjct: 2   EDRRAAIFKAIDQAKSGDVVLIAGKGHETYQVIGDKVLE-FDDRKIALEAI 51


>gi|134298544|ref|YP_001112040.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
 gi|189029171|sp|A4J2B2|MURC_DESRM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134051244|gb|ABO49215.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 145/409 (35%), Gaps = 43/409 (10%)

Query: 70  AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+V S+A S ++     T R   P++     R+      +RL  +  +  +AV G  GK+
Sbjct: 71  AVVYSTAISPENPEILETQRLGIPLI-----RR--GQMLARLMKE--KKGIAVAGAHGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    I + +      I     +S+   + +L           ++       + + +
Sbjct: 122 TTTSMTALILEENSFDPTII-IGGDLSNIGGNAKLGQGE-----YMVAEADESDGSFLLL 175

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           +                     TN+  DH+DY+ T++    A  R F   L  E  A+I 
Sbjct: 176 D---------------PNIAVVTNIEDDHLDYYGTRENIAKA-FRQFLAKLSAEGLAVIC 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   KE+            S+G    +            Q      E +       +P
Sbjct: 220 LDDPVLKEITTGLTCQVVTYGSLGSGADYQIKVLETRNGVNQGEVYFQEERLGMLELHVP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NA+ A  +   + +D   +   L K      RF+ +G    G  +  DYAH   
Sbjct: 280 GYHNLLNAMAAVAIGRHLNLDFEKIARALRKFTGAKRRFQVIG-KVNGITVVDDYAHHPT 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            ++  L+  RT   GRI+ +F      R +      G+ +    D+ I+TD    SE P 
Sbjct: 339 EVKATLQAARTSHPGRIVTIFQPHRYSRTKQLFKEFGQ-SFTNGDLIILTDIYAASELPL 397

Query: 427 K------IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +      I   I +      +      +A     +  N  D+++  G G
Sbjct: 398 EGVHTKLILDAIPLQEGQQVLYLPTLKDAADYLADYANPGDLVLTMGAG 446


>gi|298507096|gb|ADI85819.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens
           KN400]
          Length = 462

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 130/408 (31%), Gaps = 39/408 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV+S     D    + +   ++ V    + L+      YG      +A+ GT GK++  
Sbjct: 67  VVVTSTAVRDDNPEVVEAKRRMIPVIPRAEMLAELMRMKYG------IAIAGTHGKTTTT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  +    G+    +     +++   + +L                           +
Sbjct: 121 SMVATVLTHGGIDPTIV-IGGKLNTLGTNAKLGQG--------------------QFLVA 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +       TN+  DH+D++             F   +P    A++  +D
Sbjct: 160 EADESDGSFLKLSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLED 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               E++ R                     ++        V      +  +  F +PG  
Sbjct: 220 RNIAEILPRVKKRFVTYGLSSQADIRATHIRLEG-GTTSFVAHYKGYRMGEVSFSMPGAH 278

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    + + + +  + + E       V  RF+  G    G  +  DY H    + 
Sbjct: 279 NVLNALACIAVAMELDVPFSQIQEGFATFGGVGRRFQVKG-EVNGITVVDDYGHHPAEIR 337

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP--- 425
             L   ++    R +VV      R    R +  +       AD+ ++TD  P  E P   
Sbjct: 338 ATLAAGKSGWPERRLVV-AFQPHRFSRTRELFAEFVTCFYDADVLVLTDIYPAGEAPIEG 396

Query: 426 ---EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E++  EI   G        +R       + ++   D+++  G G+
Sbjct: 397 VSAERLAEEIRKHGQRDVTYVADREALPEHLLTVVQPGDIVLTLGAGN 444


>gi|256751648|ref|ZP_05492523.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749457|gb|EEU62486.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 464

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 132/426 (30%), Gaps = 43/426 (10%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N PI+   +    L L   +      +  +AV G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKY-----KYGIAVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I          +     +     + R+ +             S      
Sbjct: 119 GKTTTTSLISVILDGMEFDPTVL-VGGEVDVIGGNVRVGSSEYFVTEACEYTDSFLKFY- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DDA +  V+   +                                  E    +F  
Sbjct: 217 VACKDDANTMYVVNGLNKNIVTYGIYEDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  DYAH
Sbjct: 277 SIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKG-IVDGITIVDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L+  +     RII +F      R +       + + D AD  I+ D     E
Sbjct: 336 HPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAE-SFDNADKIIIADIYAARE 394

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVHIV 475
                   + +   I       +   +    +    +     D+++  G G+  E   + 
Sbjct: 395 KDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNIYEVGEMF 454

Query: 476 TNGEKK 481
             G KK
Sbjct: 455 LKGHKK 460


>gi|229490386|ref|ZP_04384227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
 gi|229322676|gb|EEN88456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
          Length = 519

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 146/505 (28%), Gaps = 73/505 (14%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E++   ++  +     ++   V  DSR +  G +F+A+ G + DGH       
Sbjct: 4   MTLSRIAEIVGG-TLHDVDDSSTQVTGTVEFDSRKVAPGGLFLALPGARVDGHDHAE--- 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN----------------------TRKFL 102
                    + A       A      P +VV +                          L
Sbjct: 60  --------AAVAAGAVAVLAARPVGVPAIVVPSVPNDGPSAVMLLEHDTDGSGAAVLHAL 111

Query: 103 SLFASRLYGKHPE---------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            L A  +  +             ++ VTG++GK+S    +  + +  G      G     
Sbjct: 112 GLLARAVVDELATDGTPADGGLTLVGVTGSAGKTSTKDLIAALLRECGEVVAPPGS---- 167

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                +N L  P        L          + + A   G             G   N+G
Sbjct: 168 ----FNNELGLP-----WTVLRADEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVG 218

Query: 214 RDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             H+    +++A   AK  L E      +    +   D      M     A    +    
Sbjct: 219 TAHLGEFGSREAIAVAKGELVEALPSAADGGVAVLNADDRMVAAMASRTKARIVFVGQSE 278

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    V     +   T++           + GE  V NAL AA + +  G+  A +
Sbjct: 279 DCDVRATDVVVDDQARASFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADI 338

Query: 333 LEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI------RTITSGRII 385
              LE        R E          +   Y    +S+   LK +            R  
Sbjct: 339 ARVLEGTKAASARRMEVTERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSW 398

Query: 386 VVFGCGGDRDQG---KRPIMGKIALDL--ADIAIV-TDDNPRSEDPEKIRAEIIHGIPGF 439
            V G  G+       +   +G++A+ L  + + +V T    R+     +           
Sbjct: 399 AVLGEMGELGPESVVEHDAIGRLAVRLDVSKLIVVGTGRTSRAMHQGAVME--GSWGDES 456

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +   AI      L   D+++V
Sbjct: 457 VVVPDAAAAIAILEAELEPGDLVLV 481


>gi|218458612|ref|ZP_03498703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
          etli Kim 5]
          Length = 81

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/47 (46%), Positives = 28/47 (59%)

Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
          I  +S DSR I  G  F AI G++ DGH +   A+A GA  +VVS A
Sbjct: 26 ITGISIDSRSISPGEAFFAIKGDRVDGHDYASMAMANGASLLVVSEA 72


>gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
          Length = 846

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 118/374 (31%), Gaps = 36/374 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    M   +  I+ + +DSR +      +F A+   +  G  +IP+   +G 
Sbjct: 5   IESIAKSIGARRMGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN-----------------TPILVVDNTRKFLSLFASRLY 110
              ++    + L +                            L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  +  
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIV--------RSPRSYNSQIGVPLSV-- 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                      +       S  G        IK   G  TN+G  H +   + Q     K
Sbjct: 175 ---WQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + LF+     +       ++  S  V K    A     S     + +++ +V    +   
Sbjct: 232 LTLFK---DCDVVIYNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTV 288

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++      D  F  P   +  + N L     C+ +   +  + E + +L  +  R E   
Sbjct: 289 ISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKE 348

Query: 351 TNSRGGRIYVDYAH 364
             +    I   Y  
Sbjct: 349 GKNNCVLINDSYNS 362


>gi|260171780|ref|ZP_05758192.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. D2]
 gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 846

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 118/374 (31%), Gaps = 36/374 (9%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    M   +  I+ + +DSR +      +F A+   +  G  +IP+   +G 
Sbjct: 5   IESIAKSIGARRMGKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGV 64

Query: 69  E-AIVVSSAYSLQDFSATIRSN-----------------TPILVVDNTRKFLSLFASRLY 110
              ++    + L +                            L+V N  K L   A    
Sbjct: 65  RNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHR 124

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            K    ++ +TG++GK+ V  ++ Q+                 S  + ++++  P  +  
Sbjct: 125 DKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIV--------RSPRSYNSQIGVPLSV-- 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                      +       S  G        IK   G  TN+G  H +   + Q     K
Sbjct: 175 ---WQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEK 231

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + LF+     +       ++  S  V K    A     S     + +++ +V    +   
Sbjct: 232 LTLFK---DCDVVIYNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTV 288

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++      D  F  P   +  + N L     C+ +   +  + E + +L  +  R E   
Sbjct: 289 ISYRYLEMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKE 348

Query: 351 TNSRGGRIYVDYAH 364
             +    I   Y  
Sbjct: 349 GKNNCVLINDSYNS 362


>gi|332981725|ref|YP_004463166.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
 gi|332699403|gb|AEE96344.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
          Length = 879

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 131/392 (33%), Gaps = 29/392 (7%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           N  K +         +    I++VTG++GK++    +  + +  GL+           + 
Sbjct: 462 NAAKAIIDMLYPQGQRSSIPIVSVTGSNGKTTTVRIIAHMLRTQGLNVGMTTTGGIYIND 521

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
               +  T  P      LS      V    +E +  G+ +  L       G  TN+  DH
Sbjct: 522 ECIMKGDTTGPASAQIILSDK---SVEAAVLETARGGIIRSGLGYDLSDVGVITNITGDH 578

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +             ++       K++   +   D        R         S       
Sbjct: 579 LGIDGIHTLEDMLHVKSLIVEAVKDNGYAVLNADDAISVQAARRVRCNLIYFSFNQNNIL 638

Query: 277 IHLK------------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           I  +                + + + +   +   +    +     + + N++ A      
Sbjct: 639 IQHQIDNGRPAVYLKDDYIVLFDGENIYNVIAVDEIPATWEGKLTYNIENSMAAVAAGYG 698

Query: 325 IGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           I +  +++ + L   +      PGRF     N R  R+ VDYAH   S + ++  ++ + 
Sbjct: 699 IKVPVSVMEKALRTFYSDSLQNPGRFNI--FNVRDFRVIVDYAHNVESYKSVISALKQMN 756

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRA-----EIIH 434
             R+I V G  GDR       MG+IA    D  I+ +D   R     ++        +  
Sbjct: 757 PARLIGVIGAPGDRRDEDIIEMGRIAGYGFDRIIIKEDIELRGRQTGEVSRLLQQGALRA 816

Query: 435 GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G+P        +  +AI  A+      D+++V
Sbjct: 817 GMPKSSMNIILSETDAISAAMGQAQPGDIVIV 848


>gi|332670123|ref|YP_004453131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
 gi|332339161|gb|AEE45744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
          Length = 485

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 86/454 (18%), Positives = 146/454 (32%), Gaps = 45/454 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +DSR ++ G +FVA+ G   DGH + P A+A GA  ++ +   +  D         P 
Sbjct: 34  VVTDSREVEPGGLFVALPGEHVDGHDYAPGAVAAGAALVLGARELTGADGRLLPVVVVPD 93

Query: 93  LVVDNTRKFLSLFASRL----------YGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                  + L   A  +           G     ++ +TG+ GK++    +         
Sbjct: 94  -----VERALGDLAREVLVRLRAASLEPGGPGLRVVGITGSVGKTTTKDLL--------- 139

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +   G      +  +        P+ +        S     + + AS  G   +  D  
Sbjct: 140 -AQLCGSAGPTVAPVRSFNNEIGLPLTVL---RADESTRFLVLEMGASGPGHLTYLTDIA 195

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                    +G  H+      +A   A      + L  +  A++ ADD     +   A  
Sbjct: 196 PPDVAVVLVVGHAHLGGFGGIEAVATA-KSEIVQGLLPDGVAVLNADDPRVLAMRALAPG 254

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNALVAA 319
                 +        H   V      + V  + +    +       L GE  V+NAL AA
Sbjct: 255 DVVTFGASTGAQVRAHDVVVDRSGRARFVLEARDGAGSRTVPVELRLVGEHHVHNALAAA 314

Query: 320 GLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
              +A+G+    V   L       P R   V        I   Y    +S+   LK +  
Sbjct: 315 ATGLAVGLTLDEVAVGLGAADALSPHRMHVVERPDGVTVIDDSYNANPDSMRAALKALAV 374

Query: 379 I--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           +     R + V G     GD  +     +G++ + L     +T      E    IR    
Sbjct: 375 LAGRDRRSVAVLGEMLELGDEAREAHDAIGRLVVRL--NVGLTV--VVGEGARAIRDGAN 430

Query: 434 HG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           H        +   +   A R   E L   DV++V
Sbjct: 431 HEGSWGDEVVLADDLETAARFLDEELRPGDVVLV 464


>gi|332521388|ref|ZP_08397844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
 gi|332043116|gb|EGI79314.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
          Length = 400

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 118/347 (34%), Gaps = 32/347 (9%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           F A+ G+  +G+ F  +A+ +GA+ +++              +++  ++V+N  + L   
Sbjct: 2   FFALKGDNFNGNTFSTEALKKGAKYVIID--------ELEYNTSSQTILVENVLETLQQL 53

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A+         I+ +TG++GK++    +  +  +   ++   G  +            T 
Sbjct: 54  ATYHREYLNIPIIGLTGSNGKTTTKELINTVLSKKYNTTATKGNLNNHIGVPLTLLSMTK 113

Query: 166 SP-IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              I + +  +    +     ++     G                TN G+ H++   + Q
Sbjct: 114 DTEIGIVEMGANHLKEIEFLSNIAKPDFGY--------------ITNFGKAHLEGFGSIQ 159

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              N K  L+  L+  +      ADD    E +   +         G+  +  +   +  
Sbjct: 160 GVINGKSELYNYLITYKKHIFFNADDTIQNEKLSNYNLKS------GFSNQTQNQLNINF 213

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +     VT+  + +         G++   N   A  +     +  + +   +E       
Sbjct: 214 LEANPFVTLKFQDQIITSQL--IGKYNFTNISAAITIGSYFNVKFSDIKAAIENYAPTNN 271

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           R + +   +    I   Y     S++  L+N   + +   I   G  
Sbjct: 272 RSQII-NKNSNKIILDAYNANPTSMKAALENFSNLNATYKIAFLGDM 317


>gi|289579519|ref|YP_003478146.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9]
 gi|289529232|gb|ADD03584.1| cyanophycin synthetase [Thermoanaerobacter italicus Ab9]
          Length = 876

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 144/440 (32%), Gaps = 35/440 (7%)

Query: 65  AQGAEAIV-VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   +  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 KNGAIIEINASPGIRMHHYPSKGKP-------RNVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G +                 +     P      L+  +     
Sbjct: 487 NGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADKNIDA-- 544

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E +  G+ +  L       G  TN+  DH+     +     A ++       KE  
Sbjct: 545 -AVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIKTLEDLAFVKSLVVEAVKEDG 603

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-----------KFIHLKKVCAIHNKQQVT 292
             +   D      + +         S+                 +++K    +    Q+ 
Sbjct: 604 YSVLNADDLMTPYLAQRAKGKVIYFSMYDNNLTVKKHVEKGGIAVYVKDGVIVIANGQII 663

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVG 350
             V+ ++          + V NAL A      + +   ++ + ++  +         F  
Sbjct: 664 PVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFNL 723

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I  +  
Sbjct: 724 FNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGEGF 783

Query: 411 DIAIVTDD-NPRSEDP---EKIRAE--IIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           D   + +D + R   P    KI  E  I  G+            EA++ A+      D++
Sbjct: 784 DFIYIKEDVDLRGRKPGEVAKILEEGAIKGGMDRKKIKIILKETEALKAAMYHAEAGDLI 843

Query: 463 VVAGKGHETVHIVTNGEKKM 482
           VV    +E    + +  ++ 
Sbjct: 844 VVF---YEKYQPIIDVIEEF 860


>gi|254462013|ref|ZP_05075429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678602|gb|EDZ43089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 485

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 115/348 (33%), Gaps = 26/348 (7%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  ++ +S D+R I+ G +FVA+   + DGH F+ Q           + A  +      +
Sbjct: 20  DWSVSGISIDTRSIEVGDLFVALKAAR-DGHEFVAQ------ALAKGAGAALVTHVPEGV 72

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+LVV++    L         +    ++A+TG+ GK+S    ++ +    G +   
Sbjct: 73  AKDAPLLVVEDVLSALEDLGRAGRARTEARVVAITGSVGKTSTKEMLRDVLSAQGRTHAS 132

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +   +               P+ LA+         +        +H  +   L  +    
Sbjct: 133 VASYNNHWGV----------PLTLARMPQDTEFAVIEIGM----NHPGEIAPLAKMARPH 178

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            S                    A+       L  +  AI+ AD   +  +  +A      
Sbjct: 179 VSLITTVAAAHLEAFDNIDGIAAEKAAIMNGLEPDGVAILNADIETAHVLKSKAEAMHIN 238

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +  G       L+      N   V  ++ G    F     G+    N L A     A+G
Sbjct: 239 AVWFGASADEYCLETCVLRGNTTVVEANILGTPLLFKIQSAGQHFAMNGLGALASAEALG 298

Query: 327 IDSALVLEHLEKLHVVPGR-----FEFVGTNSRGGRIYVDYAHTSNSL 369
            D AL  + + K     GR           +SR     +D A+ +N  
Sbjct: 299 ADLALAAQSIAKWVPFTGRGAREVIALDPADSRMTLELIDDAYNANPT 346


>gi|74316138|ref|YP_313878.1| UDP-N-acetylmuramate--L-alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
 gi|109892754|sp|Q3SMH2|MURC_THIDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74055633|gb|AAZ96073.1| UDP-N-acetylmuramate--alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 463

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 147/433 (33%), Gaps = 49/433 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G +   GH   P  IA GA+A+V S+A    +          I +V      L+      
Sbjct: 50  GARIHRGH--APSNIA-GADAVVTSTAVQESNPEVVAAREKKIPIVPRAL-MLAELMRLR 105

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G      +A+ GT GK++  S V  I   +G+    +     +++   + RL     + 
Sbjct: 106 QG------IAIAGTHGKTTTTSLVASILGEAGMDPTYV-IGGKLTAAGTNARLGQGDFLV 158

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S  S                       +  +    TN+  DH+D +         
Sbjct: 159 AEADESDASFLY--------------------LTPVIAIVTNIDADHMDTYGHDFDRLKT 198

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F + LP    A++  DDA  +E++ R                 +        H + 
Sbjct: 199 AFVDFCQRLPFYGMAVLCIDDANVREILPRITKPITTYGF--DPAAQVRAVDTRFEHGQM 256

Query: 290 QVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + T+  E   D D     PG   V NAL A  +   +G   A +++ L + H V  RF+ 
Sbjct: 257 RFTVKREGMADLDVTLNQPGLHNVLNALAAIAVATEVGASDAAIVKALAEFHGVGRRFQR 316

Query: 349 VGTNSR----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIM 402
            G +         +  DY H    +   L   R    GR +V+        + +      
Sbjct: 317 YGEHPTKDGGCYWLIDDYGHHPVEMAATLAAARGAFPGRRLVLVFQPHRYSRTRDCFEDF 376

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEM 455
            K+  +  D  ++T+  P  E P        +   +   G    +   N  +   T  ++
Sbjct: 377 VKVLSE-TDALVLTEVYPAGEAPIVAADGRALARAVRVAGKVEPVFVENVADVAATVRDL 435

Query: 456 LNKQDVLVVAGKG 468
           +   DV++V G G
Sbjct: 436 VQADDVVLVMGAG 448


>gi|225174456|ref|ZP_03728455.1| UDP-N-acetylmuramate/alanine ligase [Dethiobacter alkaliphilus AHT
           1]
 gi|225170241|gb|EEG79036.1| UDP-N-acetylmuramate/alanine ligase [Dethiobacter alkaliphilus AHT
           1]
          Length = 461

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 160/435 (36%), Gaps = 53/435 (12%)

Query: 47  VAIVGNKED-GHL--FIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF 101
           +A  G +   GH   ++      GAE ++ S+A    +    A +++  PI      R  
Sbjct: 46  LAREGAEVHQGHDKSYVD-----GAELVIYSTAIPRHNPEYAAAVQAGLPIWH----RSK 96

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L   A  L G+     +A+ GT GK++  S V ++    GL          ++ F  + R
Sbjct: 97  L--LAHFLNGRF---GIAIAGTHGKTTTTSMVAKVLTSGGLDPTAF-IGGVLNDFGGNAR 150

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +           ++       + +   AS                   TN+  DH+++++
Sbjct: 151 IGRS-----QYVVAEADESDNSFLRYNAS---------------LAVVTNIEADHMEHYE 190

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                  +  R F + +  E  AI+YA+D   + +     +   ++++ G          
Sbjct: 191 GDFDLLLSGYRQFLKNIKPEGTAILYAED---QYLGDMVPDHLSKIITYGRDKGDYRATD 247

Query: 282 VCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +       + T+     +   +F  +PG   V NAL A  + + +G+  A + + L +  
Sbjct: 248 LRPQGWGTRFTVRRGEAELGEIFLHVPGSHNVLNALAAVVVGLELGVSFADIQKGLGEFR 307

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKR 399
               RF+F+        +  DYAH    +++ L+  R+    R+I VF      R Q   
Sbjct: 308 GADRRFQFL-YQKNDLLVIDDYAHHPTEVQVTLQAARSNKPRRVIAVFQPHRYSRTQYFM 366

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAI 453
               +     AD   +      SE+P +      +   I        +  +  E +   +
Sbjct: 367 DDFARSFGQ-ADKVFLHRIYAASEEPLEGVSSSVLAERIRAQGVDVEQIDDENEIVEKVL 425

Query: 454 EMLNKQDVLVVAGKG 468
            ML   D+++  G G
Sbjct: 426 AMLQAGDMVLTMGAG 440


>gi|167039242|ref|YP_001662227.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter sp.
           X514]
 gi|300913882|ref|ZP_07131199.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725433|ref|YP_003905184.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
 gi|166853482|gb|ABY91891.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890567|gb|EFK85712.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582494|gb|ADN55893.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
          Length = 464

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 131/426 (30%), Gaps = 43/426 (10%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N P +   +    L L   +      +  +AV G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTI---DRATLLGLIMKKY-----KYGIAVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I    G     +     +     + ++               S      
Sbjct: 119 GKTTTTSLISVILDGMGFDPTVL-VGGEVDVIGGNVKVGNSEYFVTEACEYTDSFLKFY- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DDA +  V+   +                                  E    +F  
Sbjct: 217 VACKDDANTMYVVNGLNKNIVTYGIYQDSDWKAKSISFDDKGCAIFDVYYKEEYMGNFKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  DYAH
Sbjct: 277 SIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEVKG-IVDGITIVDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L+  +     RII +F      R +       + + D AD  I+ D     E
Sbjct: 336 HPAEIKATLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAE-SFDNADKIIIADIYAARE 394

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVHIV 475
                   + +   I       +   +    +    +     D+++  G G+  E   + 
Sbjct: 395 KDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNIYEVGEMF 454

Query: 476 TNGEKK 481
             G KK
Sbjct: 455 LKGHKK 460


>gi|323703625|ref|ZP_08115268.1| FolC bifunctional protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531397|gb|EGB21293.1| FolC bifunctional protein [Desulfotomaculum nigrificans DSM 574]
          Length = 437

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 119/382 (31%), Gaps = 37/382 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
           NI+ + GT+GK S  + +  I   +G            S   +                 
Sbjct: 42  NIVHIGGTNGKGSTTAMIASILMEAGYKVGMFTSPHLHSYTERFVINGECIAEAQLAQLI 101

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF-----------------T 210
             +   L  + ++   H +    S  L  +     +                        
Sbjct: 102 TTVKPHLEAMVAEDYEHPTEFEVSTALALYYFAQAETDFVVLEVGLGGAIDSTNVVTPLV 161

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           ++  +    H          +   +  + K+   ++ A D  + E++K+        L  
Sbjct: 162 SVITNVTLDHMDYLGPRVEDIARVKAGIIKKGVPVVTAADGVALEIIKQVAGENNSKLIQ 221

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC----IAIG 326
             Q          +    Q+  +      +    PL G  Q  NA  A            
Sbjct: 222 VGQDITWTPLSSESEKGYQEFLVKGLQNHYHVRLPLLGPHQQINASTAIAAVEMLFRWGH 281

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-II 385
              A  +         PGR E V        + +D AH       + + ++     R II
Sbjct: 282 HIPAQAVLAGLSKVRWPGRMEIVRQ---HPTVIIDGAHNHAGAVALRQALQQHFPHRDII 338

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +V G   D++   R  +      LA   IVT  +NPR+ D  ++   +   +   + + N
Sbjct: 339 LVLGMLADKE---RAKVVAELAPLARTVIVTRSNNPRAGDWTRLADYVKVYLDDVMIEEN 395

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             EA++ A+ + ++  ++ + G
Sbjct: 396 VTEAVKKAVSLAHQDQLVCITG 417


>gi|297616982|ref|YP_003702141.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144819|gb|ADI01576.1| UDP-N-acetylmuramate/alanine ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 461

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 145/410 (35%), Gaps = 47/410 (11%)

Query: 70  AIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +VVSSA      +  A  R   P++      + L+L +++  G      +A+ G  GK+
Sbjct: 68  LVVVSSAIPPDNPEIQAAKRLGIPVIK---RGEMLALLSNKYRG------IAIAGAHGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  + + +GL          +     + +L            S  S         
Sbjct: 119 TTTSMISLVLEDNGLD-PTFIIGGQMQRSLVNAKLGRGELFVAEADESDASFLR------ 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  DH+DY+Q+++   +A  + F   +  E  A+++
Sbjct: 172 --------------LHPHVAVVTNVEDDHLDYYQSEENIRSA-FQQFVNQVLPEGFAVLF 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           + D +   + +++               F    + C I +  +     +    D    +P
Sbjct: 217 SGDRFLAGLKQKSRARLVYYGFDDNSDYFCREIRACGIGSAFKAYCRGQM-LGDVYLKVP 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NA+ A  +   +G++   +   L        RFE VG    G  +  DYAH   
Sbjct: 276 GIHNVLNAMAAIAVGCEVGVNFEGITRALGGFLGAKRRFEVVG-KLNGITVIDDYAHHPT 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDNPRSED 424
            ++  +   R     R+IV+F         +  ++G     A   +D+ I+TD     E 
Sbjct: 335 EIKATILAARQFHRSRLIVIFQPHR---YTRTKLLGHQFGPAFQGSDMVIITDVYGAGEV 391

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P      E I    +      +    + E +    + L   D+++  G G
Sbjct: 392 PIPGVTGELIYKSAVAEGCNAVYIPAKNEVVDYVAKQLKSDDLVITMGAG 441


>gi|159045011|ref|YP_001533805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912771|gb|ABV94204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 479

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 86/463 (18%), Positives = 153/463 (33%), Gaps = 47/463 (10%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +  +  VS D+R +  G +FVA+   + DGH F+ Q           + A  +      +
Sbjct: 21  DWAVTGVSIDTRELAPGDLFVALTAAR-DGHDFVAQ------ALAAGAGAALVSRIPEGV 73

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             + P+L+V + +  L         +    ++A+TG+ GK+S    ++      G +   
Sbjct: 74  AEDAPLLLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAHAA 133

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +               P+ LA+  +      V  + +  +  G         +  A
Sbjct: 134 ERSFNNHWGV----------PLTLARMPA---GTEVAVIEIGMNHPGEIAPLARMARPHA 180

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              T +   H++   + +A    K  +FE  L  +  A+I  D   +  +   A +AG R
Sbjct: 181 ALITTIAAAHLEALGSLEAIAVEKASIFEG-LEPDGLAVIPGDLPQTPILRAAAEDAGAR 239

Query: 267 VLSVGYQ-GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + S G   G    L  V A+         + G +       PG   +  AL        +
Sbjct: 240 IESFGTGAGNTHRLSDVQAVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGV 299

Query: 326 GIDSALVLEHLEKLHVV-----PGRFEFVGTNSRGGRIYVDYAHT-----------SNSL 369
           G D A  L  L             R +            +D A               + 
Sbjct: 300 GADPARALMALGAWAPPSGRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLAQ 359

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI--VTDDNPRSEDPEK 427
                +I  I  GR I + G   +    +  +   +A   A   I  V    PR +    
Sbjct: 360 AAPAHDIGRIAKGRRIAILGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALHA 419

Query: 428 IRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAG-KG 468
              E   G           +A +  A  +++  DV++V G KG
Sbjct: 420 ALPEDKRG-RWVET----AQALVPHAHALVDAGDVVLVKGSKG 457


>gi|297545642|ref|YP_003677944.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843417|gb|ADH61933.1| cyanophycin synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 876

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/440 (16%), Positives = 151/440 (34%), Gaps = 35/440 (7%)

Query: 65  AQGAEAIV-VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   +  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 KNGAIIEINASPGIRMHHYPSKGKP-------RNVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G +                 +     P      L+  +     
Sbjct: 487 NGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADKNIDA-- 544

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEELLPKES 242
              +E +  G+ +  L       G  TN+  DH+     +     A    L  E + ++ 
Sbjct: 545 -AVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIKTLEDLAFVKSLVVEAVKEDG 603

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQVT 292
            +++ ADD  +  + +RA                       G  +++K    +    Q+ 
Sbjct: 604 YSVLNADDPMTPYLAQRAKGKVIYFSMYDNNLTVKKHVEKGGIAVYVKDGVIVIANGQII 663

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVG 350
             V+ ++          + V NAL A      + +   ++ + ++  +         F  
Sbjct: 664 PVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFNL 723

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I  +  
Sbjct: 724 FNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGEGF 783

Query: 411 DIAIVTDD-NPRSEDP---EKIRAE--IIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           D   + +D + R   P    +I  E  I  G+            EA++ A+      D++
Sbjct: 784 DFIYIKEDVDLRGRKPGEVARILEEGAIKGGMDRKKIKTILKETEALKAAMYHAEAGDLI 843

Query: 463 VVAGKGHETVHIVTNGEKKM 482
           VV    +E    + +  ++ 
Sbjct: 844 VVF---YEKYQPIIDVIEEF 860


>gi|209545290|ref|YP_002277519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532967|gb|ACI52904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 139/448 (31%), Gaps = 35/448 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  VS D+R +  G +F+A+ G   DGH  +  A+    +    ++         T  
Sbjct: 24  VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAAL----DQGAAAAMIHDPTVLGTDS 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  +L V +T   L+        +    ++AVTG+ GK++    ++      G +    
Sbjct: 80  DDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKTTTKEMLRLALGAIGPTHCAA 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ LA               V  +  G        ++ +  
Sbjct: 140 ASYNNHWGV----------PLTLA---RLPMDAAFCVCEVGMNHPGEIAPLAVMVRPLVA 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   H+ +  + +A    K  L   L P     +            + A       
Sbjct: 187 LVTTIAGAHLGHMGSLEAIAREKSDLIATLPPAGIAIVPDDATGQPIFAEQAARARATLW 246

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +       + +  V         T++++G+        PG   V NA  A     A+G 
Sbjct: 247 RAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATALAAVAALGA 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D A     L       GR            +  + Y  +  S+   L  +  + + R + 
Sbjct: 307 DIATAATALADFRPGAGRGALKPILGGRAALLDESYNASVLSVRSSLAVLGLLPATRRMA 366

Query: 387 VFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           V G   +     R     +    L  AD+   +  +       K   +++          
Sbjct: 367 VLGDIRELGAFARAEHESLLSAVLAHADLVFCSGPD------MKYLFDLLPPSRRGAWAP 420

Query: 444 NRIE-A--IRTAIEMLNKQDVLVVAGKG 468
           +    A  +R A+      DV++V  KG
Sbjct: 421 DAASLAPLVRDAVAQ---DDVILV--KG 443


>gi|162148957|ref|YP_001603418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787534|emb|CAP57130.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 139/448 (31%), Gaps = 35/448 (7%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  VS D+R +  G +F+A+ G   DGH  +  A+    +    ++         T  
Sbjct: 24  VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAAL----DQGAAAAMIHDPTVLGTDS 79

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            +  +L V +T   L+        +    ++AVTG+ GK++    ++      G +    
Sbjct: 80  DDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKTTTKEMLRLALGAIGPTHCAA 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
              +               P+ LA               V  +  G        ++ +  
Sbjct: 140 ASYNNHWGV----------PLTLA---RLPMDAAFCVCEVGMNHPGEIAPLAVMVRPLVA 186

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +   H+ +  + +A    K  L   L P     +            + A       
Sbjct: 187 LVTTIAGAHLGHMGSLEAIAREKSDLIATLPPAGIAIVPDDATGQPIFAEQAARARATLW 246

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +       + +  V         T++++G+        PG   V NA  A     A+G 
Sbjct: 247 RAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATALAAVAALGA 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV 386
           D A     L       GR            +  + Y  +  S+   L  +  + + R + 
Sbjct: 307 DIATAATALADFRPGAGRGALKPILGGRAALLDESYNASVLSVRSSLAVLGLLPATRRMA 366

Query: 387 VFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           V G   +     R     +    L  AD+   +  +       K   +++          
Sbjct: 367 VLGDIRELGAFARAEHESLLSAVLAHADLVFCSGPD------MKYLFDLLPPSRRGAWAP 420

Query: 444 NRIE-A--IRTAIEMLNKQDVLVVAGKG 468
           +    A  +R A+      DV++V  KG
Sbjct: 421 DAASLAPLVRDAVAQ---DDVILV--KG 443


>gi|332283266|ref|YP_004415177.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427219|gb|AEC18553.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
          Length = 468

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 89/435 (20%), Positives = 141/435 (32%), Gaps = 57/435 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA AIV S+A S  +          I VV      L+           +
Sbjct: 56  GHD---AANIRGAGAIVTSTAVSADNPEVLAARAARIPVVPRAL-MLAELMRL------K 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +    G           ++S   + RL     I +    S
Sbjct: 106 RGIAVAGTHGKTTTTSLVASVLAA-GDLDPTFVIGGRLNSAGANARLGQGEFIVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH+D +    A   +    F 
Sbjct: 165 DASFLN--------------------LLPVMCIITNIDVDHMDTYGHDVARLKSAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + LP    A++ +DD   +E++     +             +    V A     +  +  
Sbjct: 205 QRLPFYGTAVLCSDDPNVREII--PFVSRPVTTYGIESEAQVRALNVRADGTLMRFDVQR 262

Query: 296 EGKD-----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +G             LPG   V NAL A  +   +G+  A ++E L   + V  RF  VG
Sbjct: 263 QGATGALPPMTVSLNLPGHHNVLNALAAIAVATELGVPDAAIVESLAAFNGVGRRFTQVG 322

Query: 351 TNSR-------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PI 401
                         +  DY H    +   L   R     R IV+        + +     
Sbjct: 323 DFPVAAQQGGGTYTVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFED 382

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--------GIPGFIEKGNRIEAIRTAI 453
             +I    AD  ++TD  P  E P  I A+           G    +   +  E  +T  
Sbjct: 383 FVRILGQ-ADAVLLTDVYPAGEQP-LIAADGRALTRALRVAGKVEPVFVEDVAELPQTIR 440

Query: 454 EMLNKQDVLVVAGKG 468
           +     DV+V+ G G
Sbjct: 441 DFARNGDVVVIMGAG 455


>gi|89099774|ref|ZP_01172647.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
 gi|89085521|gb|EAR64649.1| UDP-N-acetylmuramyl tripeptide synthase [Bacillus sp. NRRL B-14911]
          Length = 695

 Score = 79.6 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 121/370 (32%), Gaps = 25/370 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ +  V+   ++ G +    G TS+   +  +  + T        A   L
Sbjct: 305 IAVTGTNGKTTTSRLVKHFIEKEGTTV---GLTSSDGVYVGEQCIDTGDCSGPISARKIL 361

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S   V    +E++  G+ +  L       G  TN+  DH+     +      K++     
Sbjct: 362 SHPKVDIAVLESARGGILREGLAFRHCDIGIVTNVSEDHLGLDGIEDFAQLVKLKRLIPE 421

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------------KFIHLKKVCA 284
           +  E    I   D      M           S+  +               ++       
Sbjct: 422 VVIEGGYCILNADDPETLKMASYTKGKVIYTSLNEESEGSQRALEKGEPLWYLDSMGQIV 481

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV--V 342
                     +   D         +  + N L A     A G+    + E          
Sbjct: 482 YAEAGIKAEFLPAADVPVTINGRAKHNIANLLQALAAAAAQGVSLETLKEKALSFTPDSR 541

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R  F     +G  I +DYAH +  L  +        + R+I +    GDR       M
Sbjct: 542 NSRGRFNAFLVQGREIIIDYAHNAAGLSAVFGTAADTKNKRLITILSAPGDRSDSDIARM 601

Query: 403 GKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIEM 455
            +I+   +D+ I+ +D + R   P +  + +       I         + +EA + A  +
Sbjct: 602 AEISAGYSDLIIIKEDKDLRGRLPLETASLLKAAASTVIDSQSVFVHPDELEAYQKAWSL 661

Query: 456 LNKQDVLVVA 465
             + D L+  
Sbjct: 662 SQEGDTLLFL 671


>gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
 gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
          Length = 823

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 144/418 (34%), Gaps = 28/418 (6%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFI 60
           L+ L      E+     I       +KI++++ DSR +      +F+++VG K  G  FI
Sbjct: 2   LRALSIDQIAEITRGELIQNDHI--QKISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFI 59

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P  I  G    +V    SL+       +    ++VD+TRK L   A        + ++++
Sbjct: 60  PALIDLGVRNFIVHKGNSLKRELLAKAN---FVLVDDTRKALQEIARYQRSYFEKPVVSI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK+ V  ++ Q+  ++   +      ++              P+ +    +     
Sbjct: 117 TGSNGKTIVKEWLGQVLSQAYQVAKSPKSYNSQ----------VGVPLSVFGIDAGHQVA 166

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +     +         R+  I+   G FTN+G  H +   +Q++    K+ LF+     
Sbjct: 167 ILEAGISKTGEMA-ALERI--IQPNLGIFTNIGSAHKEGFSSQESKILEKLSLFK----G 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +   D      ++++  +A   +      G              + + I  +    
Sbjct: 220 SDFLVYCKDQELPASIIEQEFSADKLIAWSDKAGADYTRSIKIQDVGAKIIFIKSDLSTM 279

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F  P      + N        + +G+   L+ + L  L  V  R       +    I  
Sbjct: 280 TFHVPFSDPASLENITHVLVGAMTLGLKPELIQQGLNHLKPVDMRLTLKPGVNDSLLIDD 339

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL----DLADIAI 414
            Y +    L++ L  +      +  ++      +      +  ++A        D  I
Sbjct: 340 TYNNDLAGLKVALDFLNLQRPKKRKILILSDLLQQGTAAQLYSEVAEMVKSHHLDQII 397


>gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
 gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
          Length = 495

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 84/487 (17%), Positives = 149/487 (30%), Gaps = 55/487 (11%)

Query: 6   LIYKDFPEL--INQLSIFPMQWRERKINEVS-SDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           ++     E+  +    +      +  +   +  DSR +  G +F A +G   DGH F+  
Sbjct: 1   MLQTTAREIAAVTGGELVGGATGDELVTGTARIDSREVGPGDLFAAFLGEHVDGHDFLDA 60

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK-----FLSLFASRLYGKHPENI 117
           A   GA   +V       D +A    + P + VD+ R        +  A          +
Sbjct: 61  ARTAGAALSLV------TDAAAAAEHSLPAVRVDDVRDALAALARAQLARARQENPQLVV 114

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAVTG++GK+     +  I + +G +   +G  +            T    +L       
Sbjct: 115 LAVTGSAGKTGTKDLLGTILRSAGPTVAPVGSFNNELGLPLTVLQVTGETRFL------- 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + + A   G      +  +       N+G  H+    +  A   AK  L +  
Sbjct: 168 ------VLEMGARGIGHIAELTEIARPDVSLVLNVGSAHLGEFGSVDAIARAKGELVDA- 220

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L     AI+ A+D     + +R+              +   L           + +    
Sbjct: 221 LAPGGRAILNAEDRLVAAMAERSAAPVVTWGFTTGDVRGAELTLDEQARVAFTLEVPAGL 280

Query: 298 KDFDFLFPLPGEFQVYNALVA-----------AGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                    PG F V   L+                +A    ++              R 
Sbjct: 281 TTLHGDAVAPGSFPVRPDLLGEHQAANVLAALTAALMAGVDSASATAALDGATLASGQRM 340

Query: 347 EFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTI-TSGRIIVVFGCG---GDRDQGKRPI 401
           + +     G  I  D Y    +SL   LK +  +    R I V G     G         
Sbjct: 341 QVLRAG--GALIIDDAYNANPDSLRQALKTLAHLGRRHRTIAVLGEMLELGPDTVRLHDE 398

Query: 402 MGKIALDLAD-IAIVTDDNPRSEDPEKIR--AEIIHGIPGFIEKGN-RIEAIRTAIEMLN 457
           +G++A+ L      V       E    I   A +     G  E  +   EAI     ++ 
Sbjct: 399 IGRLAVRLNIGQLYVV-----GEGAAPIHHGASLEGSFGGESEYLDTVEEAIAVLERIVQ 453

Query: 458 KQDVLVV 464
             D +++
Sbjct: 454 PGDAVLL 460


>gi|167036589|ref|YP_001664167.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115016|ref|YP_004185175.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855423|gb|ABY93831.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928107|gb|ADV78792.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 464

 Score = 79.2 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 132/427 (30%), Gaps = 45/427 (10%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N PI+   +    L L   +      +  +AV G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKY-----KYGIAVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I          +     +     + R+ +             S      
Sbjct: 119 GKTTTTSLISVILDGMEFDPTVL-VGGEVDVIGGNVRVGSSEYFVTEACEYTDSFLKFY- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DDA +  V+   +                                  E    +F  
Sbjct: 217 VACKDDANTMYVVNGLNKNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  DYAH
Sbjct: 277 SIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKG-IVDGITIVDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               ++  L+  +     RII +F       + K  ++   A     AD  I+ D     
Sbjct: 336 HPAEIKATLEAAKNYPHKRIICIF-QPHTYSRTK-SLLNDFAGSFDNADKIIIADIYAAR 393

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVHI 474
           E        + +   I       +   +    +    +     D+++  G G+  E   +
Sbjct: 394 EKDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVLTVGAGNIYEVGEM 453

Query: 475 VTNGEKK 481
              G KK
Sbjct: 454 FLKGHKK 460


>gi|184201127|ref|YP_001855334.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
 gi|183581357|dbj|BAG29828.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
          Length = 468

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 144/421 (34%), Gaps = 46/421 (10%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A   GA  +VVS+A   Q+          + V           A+ ++G+    ++AV
Sbjct: 65  DAAHVAGASTVVVSTAIREQNPELAAARGAGLRV----LHRSQALAAAMHGR---RVIAV 117

Query: 121 TGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
            GT GK++ +S      + +G   S+ IG                      A      ++
Sbjct: 118 AGTHGKTTTSSMTAVALRAAGLRPSWAIG----------------------AHVADLGAN 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
            G        +                   TN+  DH+D++ + +A+  A    F + + 
Sbjct: 156 AGFDAGEWFVAEADESDGSFMAYHPEVAVVTNVEPDHLDHYGSAEAFHRA-FDEFSDTIR 214

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVE-- 296
           +    +  ADD  +  + +R    G  VLS G   G  + L ++          I     
Sbjct: 215 EGGTLVACADDPGAARLAERRRTRGGAVLSYGTDPGADVVLSELTPHGTGTTCRIGFPVP 274

Query: 297 --GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              ++      +PG     +A  A     A G D   +L  L   H    RF+  G    
Sbjct: 275 GGRREALLELAVPGAHNAADAAAAFAAGCAAGADPEQLLAGLADFHGSARRFDLKG-EQG 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI---ALDLAD 411
           G R++ DYAH    +   L   R +  GR   V          +     +    AL+LAD
Sbjct: 334 GVRVFDDYAHHPTEVAAALGAARDVAGGRR--VLAIFQPHLYSRTREFAEAFCRALELAD 391

Query: 412 IAIVTDDNPRSEDPE-KIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           +A VTD     E PE  I    I G       +      EA+   +      DV++  G 
Sbjct: 392 LACVTDVFGAREQPEPGITGATITGHARNGRVVSTPATREAVEAVVARAEPGDVVMTVGA 451

Query: 468 G 468
           G
Sbjct: 452 G 452


>gi|150009966|ref|YP_001304709.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Parabacteroides distasonis ATCC
           8503]
 gi|255012771|ref|ZP_05284897.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. 2_1_7]
 gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503]
          Length = 821

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 120/360 (33%), Gaps = 26/360 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     Q  +  ++ + +DSR +      +F A+     DGH +I +      
Sbjct: 5   IKEIARVIGAKTNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS              +   L+V +T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSD----MLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+                 S  + +++L  P  +     +S  ++ G+    + 
Sbjct: 121 VKEFLYQLLHNEFNIV--------RSPRSYNSQLGVPLSV---WQMSEKNTLGIFEAGI- 168

Query: 189 ASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL  I     G  TN+G  H +   +       K+      L  +  AIIY
Sbjct: 169 --SQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCMEKLT-----LFNDCEAIIY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D         +     + ++         L        + +  I      F+ +  +P
Sbjct: 222 DGDDLFIANCIESACLSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIP 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                    V   + + + +    V +  + LH+ P              + ++  + S+
Sbjct: 282 FTDDASIENVIHCMAVMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSD 341


>gi|295394735|ref|ZP_06804950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972331|gb|EFG48191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 481

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 139/456 (30%), Gaps = 50/456 (10%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSR +  G IFVA  G   +G  F P            ++    +          P
Sbjct: 29  GVETDSREVSPGDIFVARRGETTNGIEFAPS------AIAAGAAIVIAEAVPTVGDDTLP 82

Query: 92  ILVVDNTRKFLSLFASRLYG--KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             VV +    L   AS      +    ++A+TG+SGK+SV   V  +    G +      
Sbjct: 83  SCVVTDATVALGKLASASVEALRETMTVIAITGSSGKTSVKDLVSVLLAGEGETV----- 137

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                  + +N +  P       AL          + + A S G   +    I+      
Sbjct: 138 ---YPPNSYNNEVGVP-----LTALRAGEETRFLVLEMGARSIGNLAYLTSLIRPDIAVE 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGC 265
            N+G  H     +      AK  L E  L +   A++ ADD         + +  +    
Sbjct: 190 LNVGAAHSGVFGSIDNTARAKAELVES-LQEPGWAVLNADDPRVRDMQNVLAQGVNTMWF 248

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCI 323
                      +    V      +   +     +        L G   V NAL AA +  
Sbjct: 249 SEGEPTRPDTTVWASDVTTGATGRSSFVLHLPGEEPAQVELSLLGRHHVSNALAAATVAH 308

Query: 324 AIGIDSALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             G+ +  ++  L         R E V + +    I   Y    +S+   L  +  +  G
Sbjct: 309 LCGVTARSIVTTLATAGAASRWRMELVDSPNGVTVINDAYNANPDSMRAALITLAEMGRG 368

Query: 383 -------RIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA 430
                  R + V G     GD    +   +G + + L  +    V       E    I  
Sbjct: 369 DDENPPRRTVAVLGEMLELGDTSIEEHDKIGSLVVRLNISRTIAV------GEGARPIYQ 422

Query: 431 EI-IHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + G          N  EA       L   D+++
Sbjct: 423 AANLEGSWGNEAAWVENISEARDLLQSELQPGDIVL 458


>gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13]
 gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13]
          Length = 821

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 120/360 (33%), Gaps = 26/360 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     Q  +  ++ + +DSR +      +F A+     DGH +I +      
Sbjct: 5   IKEIARVIGAKTNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS              +   L+V +T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSD----MLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+                 S  + +++L  P  +     +S  ++ G+    + 
Sbjct: 121 VKEFLYQLLHNEFNIV--------RSPRSYNSQLGVPLSV---WQMSEKNTLGIFEAGI- 168

Query: 189 ASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL  I     G  TN+G  H +   +       K+      L  +  AIIY
Sbjct: 169 --SQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCMEKLT-----LFNDCEAIIY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D         +     + ++         L        + +  I      F+ +  +P
Sbjct: 222 DGDDLFIANCIESACLSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIP 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                    V   + + + +    V +  + LH+ P              + ++  + S+
Sbjct: 282 FTDDASIENVIHCMAVMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSD 341


>gi|332981585|ref|YP_004463026.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
 gi|332699263|gb|AEE96204.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
          Length = 469

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 123/411 (29%), Gaps = 38/411 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ +V ++A    +      +   I  V +   FL               +AV GT G
Sbjct: 69  KGADLVVYTAAIHNDNPELNEANGLGIPTV-DRATFLGQIMKNY-----GKGIAVAGTHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I Q +GL    +                    I     +           
Sbjct: 123 KTTTTSIISIILQNAGLDPTVL-------------VGGELDAIGGNVRVGESQYFVTEAC 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               S                    N+ RDH+DY +     +NA    F +L P +   +
Sbjct: 170 EYVES--------FLKFYPYIAVILNIERDHLDYFKDLDDIYNA-FLSFAKLTPDDGYVV 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD   ++++    +                                       F   
Sbjct: 221 GCIDDPLVEQLLSDMPDKAISYGIDKPAHWTADDIAFDKKGFPSFNIYCDGLNMGRFSLS 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   +YNAL +  +    GID  ++ E L        RFE  G    G  +  DYAH 
Sbjct: 281 IPGRHNIYNALASVAVADLCGIDIEMIKESLRLYKGAHRRFEVKGRLEEGVTVIDDYAHH 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSE 423
              ++  ++         I  VF       +  R ++ + A      D  I+TD     E
Sbjct: 341 PTEIKATIQAALNYPHNHIWCVF-QPHTYTRT-RLLLDEFASAFYGIDHLIITDIYAARE 398

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 + + +   I       I   +     R  +E     D+++  G G
Sbjct: 399 VDDGSINSKDLALRINQAGQNAIYMEDFSSIERYILENCQPGDIIITMGAG 449


>gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B]
 gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B]
          Length = 821

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 120/360 (33%), Gaps = 26/360 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     Q  +  ++ + +DSR +      +F A+     DGH +I +      
Sbjct: 5   IKEIARVIGAKTNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS              +   L+V +T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSD----MLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+                 S  + +++L  P  +     +S  ++ G+    + 
Sbjct: 121 VKEFLYQLLHNEFNIV--------RSPRSYNSQLGVPLSV---WQMSEKNTLGIFEAGI- 168

Query: 189 ASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL  I     G  TN+G  H +   +       K+      L  +  AIIY
Sbjct: 169 --SQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCMEKLT-----LFNDCEAIIY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D         +     + ++         L        + +  I      F+ +  +P
Sbjct: 222 DGDDLFIANCIESACLSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIP 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                    V   + + + +    V +  + LH+ P              + ++  + S+
Sbjct: 282 FTDDASIENVIHCMAVMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSD 341


>gi|255536698|ref|YP_003097069.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 813

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 132/366 (36%), Gaps = 32/366 (8%)

Query: 30  INEVSSDSRHI-QA-GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           +  ++ DSR+I       F+AI   K  G  +I  AI +G   ++       +       
Sbjct: 24  VTGMAYDSRNIFSPLNTAFLAINTAKNSGEKYITSAIEKGISVVISQHRIESE------- 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           ++   ++V+++ KF+   A   + +   +  + +TG++GK+ V  ++ Q      ++   
Sbjct: 77  TDVTWIIVEDSLKFIQKLAKYHFAQFTLKTTIGITGSNGKTIVKEWLYQSLFDEFITVKS 136

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK-LI 205
               ++              P+ L K  +            + S    +  RL  I    
Sbjct: 137 PKSFNSQ----------LGLPLSLLKVSARDEIGIFEVGISKPS----EMERLADIFKPQ 182

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G  T++G  H    + Q+     K       L  +S  I++  D      +     +  
Sbjct: 183 IGVLTHIGPAHESNFENQKQLIEEK-----IKLFSDSDVILFNGDNLLVHSLITERYSSK 237

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +++S G++        + +   +  ++I   G++F+       E  + NAL    +   +
Sbjct: 238 KLISYGFETHNDIF--IKSSPKEGDLSIVYFGEEFNLPAQRRDEATLNNALCVIAVLKVL 295

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G  + ++ E +  L  V  R E V        I   Y    +SL++  + I         
Sbjct: 296 GFSTDIIREKINMLKPVEMRLESVKGLRNNLIINDYYNLDLDSLKIAFQFINEYNKPAKT 355

Query: 386 VVFGCG 391
           +V    
Sbjct: 356 LVLTDF 361


>gi|86160190|ref|YP_466975.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|109892690|sp|Q2IG30|MURC_ANADE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85776701|gb|ABC83538.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 458

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 133/411 (32%), Gaps = 49/411 (11%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
            +V+SSA    +       R   P++     R   L+      YG      +A+ G+ GK
Sbjct: 70  VVVISSAVKRDNPEVLEARRRKIPVI----PRAEMLAELMRLKYG------VAIAGSHGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +   +GL    +     +++F  + +L                     ++ 
Sbjct: 120 TTTTSMAAHLLAHAGLDPTAV-VGGKVNAFGSNAKLGKGD-----------------YMV 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA        R   I       TN+  +H+D+ +T  A        F   +P    AI+
Sbjct: 162 VEADESDGSFLR---IPPTIAIVTNIDPEHLDHWKTPDALRR-GFVDFVNRVPFYGLAIL 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D    + ++                       ++     +       +     F   +
Sbjct: 218 CIDHPTVQSILPDVEKRVVTYGESHQADYRAEAIELSGHAVRFD-AFRRDEALGRFEVAM 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NAL    L   +GI   +  E L     V  RF   G    G  +  DY H  
Sbjct: 277 VGRHNALNALAVIALGDEMGIPPLVTREALRSFQGVQRRFTVRG-EVAGVTVVDDYGHHP 335

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED 424
             ++  L+  R     R++ +F     R    R +M + A     AD+ ++TD     E+
Sbjct: 336 AEVKATLQGAREAFKRRVVCLF--QPHRYTRTRDLMAEFATAFNDADVLLLTDIYAAGEE 393

Query: 425 P------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P        +   I   G         R E  R A E +   D+++  G G
Sbjct: 394 PIPGATAANLAEAIRAWGHRDVTVVP-RAELARAARERIRPGDLVLTLGAG 443


>gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
 gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
          Length = 779

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 132/414 (31%), Gaps = 44/414 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+AIVVS+A    +       +   P L   +    L    +   G      +AV G+
Sbjct: 70  RGADAIVVSTAIPYDNVEVIAAWDLRIPKLHRSDINAAL---VNAYDG------IAVAGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +      +G  S  I     +     + +L T                   
Sbjct: 121 HGKTTTTSMIGVTLDCAG-VSPTIIVGGEVPDLGTNAKLGTG------------------ 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 S           ++      TN+  DH+D++ T +    A  R F +    +  
Sbjct: 162 --RYLVSEADESDGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEA-FRTFVDQTDADGT 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  ++   +++                        +                +    L
Sbjct: 219 AVLCFENEILRQIACETPCRVVSYAIDAEADYRAADMETHGSVISFT-AFERGAEMGRVL 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V NAL    +    G++   +   L + H    RF+  G    G  +  DYA
Sbjct: 278 LNIPGRHNVLNALACIAVARLAGVEFPEIRRALAQFHGAKRRFQTKGKER-GVWVVDDYA 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L   R    GR+I VF      R Q  R   G      AD+ ++TD     
Sbjct: 337 HHPTEIAATLAAARQTNPGRLICVFQPHRYSRTQLLREEFGTCFAA-ADLLLLTDVYAAG 395

Query: 423 EDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      E +  E+        +    R +      + +   D+++  G G+
Sbjct: 396 EAPIPGVSGETLMKEVAKQTGQDAVYLPARGDLEHYLAQHVRAGDLVITMGAGN 449


>gi|221065134|ref|ZP_03541239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
 gi|220710157|gb|EED65525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
          Length = 475

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 135/393 (34%), Gaps = 26/393 (6%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   + ++  V +D+R +Q G +FVA+ G + D H F+             + A +    
Sbjct: 21  VGNGQLELARVHTDTRTLQDGDLFVALKGERFDAHDFL--------SQAQAAGAVAAVAS 72

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                +    + V +T   L   A     +    ++AVTG++GK++V   +  + +    
Sbjct: 73  HGLETAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGKTTVTQMIASVLRAH-- 130

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS--SQGVTHVSVEASSHGLDQHRLD 200
                G  +  +    +N +  P  +        ++    G+ H    A    + Q  + 
Sbjct: 131 -VGAQGEAALATRGNFNNSIGMPLNLLRMTGAHRIAVLEMGMNHPGEIAELAAIGQPTV- 188

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N  R+H ++  T +A            LP++  AI  A D Y+    + A
Sbjct: 189 ------ALVNNAQREHQEFMGTVEAVARENG-SVLGFLPRDGVAIFPAGDTYTPLWTELA 241

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               C +      G  +    V          ++           + G   V NAL AA 
Sbjct: 242 AGRSCLMFGEAVAGAQVFASDVVWADGAWSFALNTPQGVAAVQLHIAGRHNVRNALAAAA 301

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR 377
              A G+  A + + L     V GR   +     G     +   Y    +S+   +  + 
Sbjct: 302 CAHAAGVSLAAIAKGLSGFEPVTGRSRALAVQVNGQGVTVVDDSYNANPDSVAAAIAVLA 361

Query: 378 TITSGRIIVV--FGCGGDRDQGKRPIMGKIALD 408
            + + +++V+   G  GD         G +A  
Sbjct: 362 ELPAPQLLVLGDMGEVGDNGPQFHAEAGALARQ 394


>gi|326390852|ref|ZP_08212404.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993111|gb|EGD51551.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 464

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 128/430 (29%), Gaps = 55/430 (12%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A      ++      N P +   +    L L   +      +  +AV G+ 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTI---DRATLLGLIMKKY-----KYGIAVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I    G     +     +     + R+               S      
Sbjct: 119 GKTTTTSLISVILDGMGFDPTVL-VGGEVDVIGGNVRVGNSEYFLTEACEYTDSFLKFY- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +  R F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FRQFANLVPPDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DDA +  V+   +                                  E    +F  
Sbjct: 217 VACKDDANTMYVVNGLNKNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  VYNAL A  +   +GID      +L +      RFE  G    G  I  DYAH
Sbjct: 277 SIPGKHNVYNALAALAVSHLVGIDIKKASHYLTEFKGTHRRFEIKG-IVDGITIVDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               ++  L+  +     RII +F       + K  ++   A     AD  I+ D     
Sbjct: 336 HPAEIKATLEAAKNYPHKRIICIF-QPHTYSRTK-SLLNDFAGSFDNADKIIIADIYAAR 393

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG---------- 466
           E        + +   I       +   +    +    +     D+++  G          
Sbjct: 394 EKDTGIVSSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKTGDLVLTVGAGNIYEVGEM 453

Query: 467 --KGHETVHI 474
             KGH+    
Sbjct: 454 FLKGHKKTVE 463


>gi|255525853|ref|ZP_05392782.1| cyanophycin synthetase [Clostridium carboxidivorans P7]
 gi|255510496|gb|EET86807.1| cyanophycin synthetase [Clostridium carboxidivorans P7]
          Length = 871

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 10/179 (5%)

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNS 353
           + +D          + + NA+ A    I + I  +++ + L   +         F     
Sbjct: 666 KIQDVMITLNGKLTYNIENAMAACAALIGLNIKYSVIRKGLTSFYGDENYNPGRFNMYEI 725

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G ++ +DY H     + ++   + I   R+I V G  GDR       +G+I+    D  
Sbjct: 726 NGVKVVLDYGHNIEGYKAVINGAKEIKHKRLIGVIGVPGDRTNSSTEYIGEISGKSFDYI 785

Query: 414 IVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +D + R     +I   I  G+              +  EA++ AIE   + D++++
Sbjct: 786 YIKEDKDRRGRKVGEIADIIKKGVVNSGFNERKINVILDEKEALKKAIEDSVEGDLIII 844


>gi|302537577|ref|ZP_07289919.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
 gi|302446472|gb|EFL18288.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
          Length = 464

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 144/413 (34%), Gaps = 45/413 (10%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA      + +       P++   +        AS + G  P   +AV GT G
Sbjct: 70  ATCVVVSSAIRADNPELARAAELGIPVVHRSD------ALASVMDGLRP---IAVAGTHG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +       GL          + +   +               S  S    T  
Sbjct: 121 KTTTTSMLAVALSALGLD-PSYAIGGDLDAPGSNAHHGEGDVFVAEADESDRSFHKYT-- 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                    N   DH   + +    + +      +++P  +  +
Sbjct: 178 ------------------PQVAIILNAELDHHANYASMDEIYESFETFVGKIVPGGTLVV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            +  +  ++   + + N    V + G      + ++K+       +V + ++G++  F  
Sbjct: 220 AHGQEGAAEIAHRVSGNPDLIVRTYGEDETADVRIRKITPRGLTSEVAVVMDGREIVFTV 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG    +NA+ A    +A+GI +  +   L K   V  R +  G  + G ++   YAH
Sbjct: 280 SVPGRHYAHNAVAALTAGVALGIPADDLAAALGKYTGVKRRLQLKG-EAAGVQVIDSYAH 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +   L+ IR+      I+V        R Q     MG+ AL LAD ++V D  P  
Sbjct: 339 HPTEMTADLEAIRSAAGDSRILVVFQPHLFSRTQELGKEMGQ-ALALADASVVLDIYPAR 397

Query: 423 EDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           EDP      E I +           + +   A+   I  M    D+++  G G
Sbjct: 398 EDPIPGVTSELIISAARTAGADVAAEHD-KTAVADVIAGMAKPGDLVLTMGAG 449


>gi|307296816|ref|ZP_07576634.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
 gi|306877729|gb|EFN08955.1| cyanophycin synthetase [Sphingobium chlorophenolicum L-1]
          Length = 925

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 133/381 (34%), Gaps = 38/381 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            A+TGT+GKS+ A  V +I  + GL+      +     +   + L          A   L
Sbjct: 521 FAITGTNGKSTTARMVGRILCQHGLNVGMATTSGV---YFNGHLLKEADASGPRSARMVL 577

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEE 236
            +  V    +E +  G+ +  L   +   G+  N+  DH+                +  E
Sbjct: 578 RNPAVDAAVLETARGGILREGLGYDRADVGAVLNVTADHLGLKGIDTVEALADVKSVVVE 637

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-------------- 282
            + +   +I+ ADD     + + A          G       L++               
Sbjct: 638 NVARRGFSILNADDPMCLRIARHAGGRIVWFSLEGGARMAETLRRHLAAGGMAVLREADE 697

Query: 283 ----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE---- 334
                 +H   Q T+ +   +         EF + NAL A  +C+A G+ +  V +    
Sbjct: 698 GGGEIVVHRGGQRTVLMHASEIPATLGGIAEFNIANALAAVAMCMAHGVPAETVRDGLRA 757

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGG 392
                   PGR       S G R+ VDYAH    L  + + +  +    GR I +    G
Sbjct: 758 FTSSFEDSPGRL--NMMESHGRRVIVDYAHNPAGLIALGQVVDRLRGGHGRAIGMVSIPG 815

Query: 393 DRDQGKRPIMGKIALDLADIAIVTD-----DNPRSEDPEKIRA-EIIHGIP--GFIEKGN 444
           DR       MG+IA  + D  I  +       PR +    +    +  G+P        +
Sbjct: 816 DRRDCDIVEMGRIAAGIFDDIIFREAPDGRGRPRGQTNALLTQGALNAGVPMERVHRIID 875

Query: 445 RIEAIRTAIEMLNKQDVLVVA 465
              A+  A+ M    D+LV+ 
Sbjct: 876 EFAAVDAALRMARPGDLLVIL 896


>gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [polymorphum gilvum SL003B-26A1]
 gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polymorphum gilvum SL003B-26A1]
          Length = 476

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 86/451 (19%), Positives = 150/451 (33%), Gaps = 39/451 (8%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           I  +S DSR +Q G  FVAI G + DGH F+       A     + A   +D    + ++
Sbjct: 27  IGGISIDSRTLQPGDAFVAIEGERFDGHDFVAA-----ALEAGAALALVARDRLERLPAD 81

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              +VVD+  + L   A     +    I+AVTG+ GK+     ++   +RSG +   +  
Sbjct: 82  GRYVVVDDPLEALRGLARAARARSHARIVAVTGSVGKTGTKEALRLALERSGRTHASVAS 141

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +               P+ LA+  +           +  +  G     +  ++      
Sbjct: 142 FNNHWGV----------PLTLARMPAD---TDYGVFEIGMNHAGEITPLVALVRPHVAII 188

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK--EVMKRAHNAGCRV 267
           T +   H+++  + +    AK  +F   L     AI+  D+A       + R        
Sbjct: 189 TTVQPVHLEFFGSVEKIAQAKAEIFTG-LEPGGVAILNRDNAQFDLLTFLARNAGVTEIR 247

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                       ++V        +   V G+D  +    PG   V N+L      + +G 
Sbjct: 248 TFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAVLLAVVELGA 307

Query: 328 DSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMILKNIRTIT---S 381
           D AL    L  L    GR  +       G    +D  Y     S+   L+ +        
Sbjct: 308 DLALAGIALGDLSAPKGRGAQTRLRLPAGVATLIDESYNANPASMRAALQVLGDAQVSPP 367

Query: 382 GRIIVVFGCGGD----RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
           GR I V G   +     D     ++  +     D+      + R         E++    
Sbjct: 368 GRRIAVLGDMRELGEAADTLHAGLIEPVTAARVDLVYCAGPHMRR------LWELLPVHR 421

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                           E L   DV+++  KG
Sbjct: 422 RAAYAEEAAGLAAMLKEDLRPGDVVMI--KG 450


>gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 428

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 138/428 (32%), Gaps = 33/428 (7%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRK 100
           F+A+VG + DGH F+ QAI  G+ A+V+   +       ++ +        +  V +T  
Sbjct: 2   FLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTVL 61

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
                A+         ++AVTG++GK++    ++ +    G      G  +         
Sbjct: 62  AYQQLAAGWRRGFAGPVVAVTGSAGKTTTRELIRAVLAPLGSVVASRGNEN--------- 112

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                 P+ L +            V +     G  +      +      TN+G  HI   
Sbjct: 113 -NDLGVPLTLLRLTDADR---AAVVEMGMRGLGEIERLSRCAQPDVAVITNIGTAHIGRL 168

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +++A   AK  +   L P+    I   D      +      A  R+   G  G+     
Sbjct: 169 GSREAIAQAKCEITTSLQPQGVVVIPAGDPLLDAALAAVWQGAVLRIALAGDPGEAEADW 228

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                     V +           PL G     N ++A  +   +G+    + +    L 
Sbjct: 229 VGQEDPAAGSVVVDG----VAVPLPLEGRHHARNLMLALAVARHLGVGPERLQQLHVALP 284

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQG 397
               R   VG           Y  +  ++   L+ + T   GR   V G     GD+   
Sbjct: 285 GGRSRRLAVGGIRLLDET---YNASPEAVLASLELLATQAGGRRYAVLGTMLELGDKSLA 341

Query: 398 KRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               + + A++L  D  ++ D         +  A    G+       +   A       L
Sbjct: 342 LHRRVARRAIELDLDGLLIVD----GGAEGEAMAAEAAGMSRLALVPSPEAAAAVLQPWL 397

Query: 457 NKQDVLVV 464
              D +++
Sbjct: 398 APGDTVLL 405


>gi|325109905|ref|YP_004270973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970173|gb|ADY60951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
          Length = 473

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 136/431 (31%), Gaps = 51/431 (11%)

Query: 3   LQD---LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           L+D   ++     ++  QL           +   S DSR +  G +F A+ G   DGH F
Sbjct: 5   LRDTVLMMPTTLQKITQQLCGRSAGSPNSNVLGHSIDSRTLNPGDVFWALPGRNCDGHQF 64

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           +  A  +GA A VVS   + +          P + V++    L+  +          ++ 
Sbjct: 65  VTAAFEKGAAAAVVSQPVTREAG--------PCIQVEDVAAALAEASFEHRNSLEALMIG 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK++    +  +  ++         T T S    +NRL  P  +         + 
Sbjct: 117 LTGSVGKTTTRQMLHAVLSKAY--------TGTASRENFNNRLGVPLSLLGISEADEYA- 167

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS+ G      + ++      T +   H+D   + +          +  L 
Sbjct: 168 ----VIEMGASAQGEIGALGELVQPEIALLTQIAPAHLDGFGSIEGV-----ISGKSELF 218

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              P    A       VM          +    QG    +       +  Q+    +G  
Sbjct: 219 DNLPESGLAVLPEHLYVMPAIRRRIHSRVLTVGQGPSADICLNNIRLDSGQLKFECDGDS 278

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           F    P           VA    + +    A +   LE    V GR         G    
Sbjct: 279 FRMNAPGKHFASSAGLCVAIARELGLTT--AQIQAGLENFSPVEGR---CCRRMIGDWTV 333

Query: 360 VDYAHTSNSLEMILKNIRTITS---GRIIVVFG---CGGDRDQGKRPIMGKIALD----- 408
           +D  + ++ + M    +  + +   G  I + G   C G+  +     +G+         
Sbjct: 334 LDDTYNASPISMSAGLVSLLQTSVSGPRIAILGDMLCLGEHAKYYHRKLGQEVARTGIDY 393

Query: 409 ------LADIA 413
                  AD  
Sbjct: 394 LLVYGEFADHV 404


>gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
 gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
          Length = 821

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 120/360 (33%), Gaps = 26/360 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     Q  +  ++ + +DSR +      +F A+     DGH +I +      
Sbjct: 5   IKEIARVIGAKTNQLLDDTVSLLLTDSRRLSFPEQSLFFALKTKTNDGHRYIQELYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS              +   L+V +T + L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSD----MLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+                 S  + +++L  P  +     +S  ++ G+    + 
Sbjct: 121 VKEFLYQLLHNEFNIV--------RSPRSYNSQLGVPLSV---WQMSEKNTLGIFEAGI- 168

Query: 189 ASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL  I     G  TN+G  H +   +       K+      L  +  AIIY
Sbjct: 169 --SQPDEMERLQPIIAPTIGIITNIGEAHQENFLSSNQKCMEKLT-----LFNDCEAIIY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D         +     + ++         L        + +  I      F+ +  +P
Sbjct: 222 DGDDLFIANCIESACLSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIP 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                    V   + + + +    V +  + LH+ P              + ++  + S+
Sbjct: 282 FTDDASIENVIHCMAVMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSD 341


>gi|325980956|ref|YP_004293358.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
 gi|325530475|gb|ADZ25196.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
          Length = 475

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 149/432 (34%), Gaps = 56/432 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           ++  A  Q  GA  +V S+A    +       N  I VV      L+       G     
Sbjct: 54  YVGHASEQVTGANVVVTSTAVKSDNPEVVAAKNRNIPVVPRAL-MLAELLRLRTG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ G  GK++  S +  I   + +    +     + +     +L +   I +    S 
Sbjct: 108 -IAIAGAHGKTTTTSLIASILAAADMDPTFV-IGGKLEAAGCHAKLGSGEFIVVEADESD 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S                       ++ +    TN+  DH++ +             F +
Sbjct: 166 ASFLY--------------------LQPVLAVVTNIDADHMETYGYDFNKLKQTFVEFLQ 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---- 292
            LP    A++  DDA  +EVM               +   +    +   +++ + T    
Sbjct: 206 HLPFYGMAVVCIDDANIREVM--PAITKSITTYGLSEDAQVRATNIQHSNHQMKFTAVIG 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++   +  D    LPG   + NAL A  +   I +  A ++  L +   V  RF+  G  
Sbjct: 264 VNGSARRLDITLNLPGLHNIQNALAAIAVANEICVPDAAIVRALAEFKGVERRFQQFGEI 323

Query: 353 SRGGRI----YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIA 406
               +       DY H    +E  +K  R    GR +VV        R +       ++ 
Sbjct: 324 RLSMQKSFTLIDDYGHHPAEMEATMKAARGAFPGRRLVVAFQPHRYTRTRDVFEDFTRVL 383

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIE---AIRTAIEML 456
              AD+ ++T+  P  EDP      + +   I   G    I   +  +   AI   ++++
Sbjct: 384 SQ-ADVLLLTEVYPAGEDPIVAADSKSLARSIRVLGKVEPIYIEDIDDLSIAI---LDVV 439

Query: 457 NKQDVLVVAGKG 468
              D+++V G G
Sbjct: 440 QDNDIVLVMGAG 451


>gi|167038658|ref|YP_001666236.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320117050|ref|YP_004187209.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166857492|gb|ABY95900.1| cyanophycin synthetase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319930141|gb|ADV80826.1| cyanophycin synthetase [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 876

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 150/451 (33%), Gaps = 45/451 (9%)

Query: 65  AQGAEAIV-VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   +  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKP-------RNVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G +                 +     P      L+  +     
Sbjct: 487 NGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTCLADKNIDA-- 544

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEELLPKES 242
              +E +  G+ +  L       G  TN+  DH+     +     A    L  E + ++ 
Sbjct: 545 -AVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKALVVEAVKEDG 603

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQVT 292
            +++ ADD  +  + +RA                       G  +++K    +    Q+ 
Sbjct: 604 YSVLNADDPMTTYLAQRAKGKIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQII 663

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVG 350
             V+ ++          + V NAL A      + +   ++ + ++  +         F  
Sbjct: 664 PVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFNL 723

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I     
Sbjct: 724 FNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQGF 783

Query: 411 DIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           D   + +D + R   P ++   +  G                  EA+R A+      D++
Sbjct: 784 DFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEALRAAMYNAEAGDLI 843

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VV    +E    +           ++I E +
Sbjct: 844 VVF---YEKYQPI----------IEVIEEFI 861


>gi|167041008|ref|YP_001663993.1| cyanophycin synthetase [Thermoanaerobacter sp. X514]
 gi|300913781|ref|ZP_07131098.1| cyanophycin synthetase [Thermoanaerobacter sp. X561]
 gi|307725533|ref|YP_003905284.1| cyanophycin synthetase [Thermoanaerobacter sp. X513]
 gi|166855248|gb|ABY93657.1| cyanophycin synthetase [Thermoanaerobacter sp. X514]
 gi|300890466|gb|EFK85611.1| cyanophycin synthetase [Thermoanaerobacter sp. X561]
 gi|307582594|gb|ADN55993.1| cyanophycin synthetase [Thermoanaerobacter sp. X513]
          Length = 876

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 137/397 (34%), Gaps = 37/397 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK++V      I +  G +                 +     P      L+  
Sbjct: 481 ISITGTNGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTCLADK 540

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEE 236
           +        +E +  G+ +  L       G  TN+  DH+     +     A    L  E
Sbjct: 541 NIDA---AVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKALVVE 597

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIH 286
            + ++  +++ ADD  +  + +RA                       G  +++K    + 
Sbjct: 598 AVKEDGYSVLNADDPMTPYLAQRAKGKIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIVI 657

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              Q+   V+ ++          + V NAL A      + +   ++ + ++  +      
Sbjct: 658 ANGQIIPVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHN 717

Query: 347 --EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
              F   N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+
Sbjct: 718 PGRFNLFNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGE 777

Query: 405 IALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEML 456
           I     D   + +D + R   P ++   +  G                  EA+R A+   
Sbjct: 778 ICGQGFDFIYIKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEALRAAMYNA 837

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
              D++VV    +E    +           ++I E +
Sbjct: 838 EAGDLIVVF---YEKYQPI----------IEVIEEFI 861


>gi|326390736|ref|ZP_08212290.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993273|gb|EGD51711.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 429

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 131/397 (32%), Gaps = 37/397 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R+ L+   +    +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRRLLNYMGN---PQKNLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIY--------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
             +                   +   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 207 ---------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN     +    T   Y +               A I   +       
Sbjct: 140 VLEVGLGGRFDATNAIDFSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKRNGVVVSFY 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++       + +   +  ++ +     V          I    K  D    L GE Q+YN
Sbjct: 200 QQPEALKVIIEACEVRNAYLTVLEKSNVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYN 259

Query: 315 ALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           A +A      + +     +   +         PGR E +        + +D AH    + 
Sbjct: 260 AALAIESVEKLKMYGYEITEKDIREGLYRAKWPGRLEVMRKKPY---VVIDGAHNPQGMT 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR 429
           ++ ++++     ++I+V G   D+D  K   M  I +  ADI I T   + R+    ++ 
Sbjct: 317 VLKESLKLFKYDKLILVIGMLKDKDTQK---MLDIIVPEADIIITTTPISERAYKASELA 373

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I       I   N  EA++ A+++  ++D+++  G
Sbjct: 374 ERIEK--EKVIAIENIEEAVKYALDIAKEEDMVLFCG 408


>gi|299139512|ref|ZP_07032686.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598440|gb|EFI54604.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
          Length = 450

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 115/348 (33%), Gaps = 34/348 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++  + + +I + +G  +   G      +        TP            
Sbjct: 110 VGITGSNGKTTTTTLMGEIFKAAGRPTLVGGNIGKPVTELVGES--TPEA---------- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS  L+   ++  +       N+  DH+D H   + Y  AK R+ E  
Sbjct: 158 ------WSVLEVSSFQLET--VESFRPRIAMVLNITPDHLDRHGNFENYAAAKARITEFQ 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             ++   I+ A+D  ++ V  +               +   +          +     E 
Sbjct: 210 TAED-FLILNAEDKPTQMVAAKTKAQIYWFSPRRQVKQGAFVHGETIFFTPSEGA-KPEP 267

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PL G   V N L A       G+ S  +   +     V  R EFV  ++    
Sbjct: 268 VMPVAEIPLAGAHNVENVLAAVCAARLAGVASETIRAAVAAFKAVEHRLEFVREHNGVRY 327

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                A   ++    ++      +GRI ++ G G D+D     +MG +  +   + I   
Sbjct: 328 YNDSKATNVDATVKAVEAF----AGRIYLILG-GKDKDSDY-AVMGPLLRERVKMVITIG 381

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                    +     + G+           A+  A E     D +++A
Sbjct: 382 ------SAAEKIEHQLAGVVKIERAETMDRAVALAHEAAVAGDTVLLA 423


>gi|71277817|ref|YP_271115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
 gi|81174947|sp|Q47VQ7|MURD_COLP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71143557|gb|AAZ24030.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
          Length = 471

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 142/403 (35%), Gaps = 45/403 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S    L     T       LV+ +   F  +  SR+    P  +LAVTG++GKS
Sbjct: 76  ADIIITSPGIDLVSEGITALIPENCLVIGDVELFCLVNNSRIS---PMKMLAVTGSNGKS 132

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S +  + +  G+++   G                          +   +     V V
Sbjct: 133 TVVSLLASLAKAIGVNAALAGNIGEPILNLLHREN----------VYNSQLANQPDIVIV 182

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   L  +  IA S  NL  DH+D H+T   Y      + + + P+   A++ 
Sbjct: 183 ELSSFQLET--LSSMHAIAASVLNLSDDHLDRHKTLANYQA----IKQSIYPQAKIAVVS 236

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  S  ++             G          + AI NK  +    +        PL 
Sbjct: 237 REDQASNTLVAAQEIIS-----FGLNKPEQDCFGLQAIDNKMVMMFGEQALISIDELPLA 291

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  L  + G   + + E+L     +  R + V +      I    A    
Sbjct: 292 GMHNALNYMAALALGYSAGWSLSAMTENLAGFMGLAHRCQRVASEDYIQWINDSKATNVG 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +  +    +G+  ++   GGD                AD + +T     + D  +
Sbjct: 352 ATLAAITGLVPTLTGQNKLILIAGGD-------------GKGADFSALTTI--LNCDVNQ 396

Query: 428 IR------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       AEI   +   I+     EA+  A ++    D++++
Sbjct: 397 LITLGKDGAEIASLVSDAIQVDTLREAVEQAKQIAKPGDMVLL 439


>gi|127514383|ref|YP_001095580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
 gi|126639678|gb|ABO25321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
          Length = 443

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 132/398 (33%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L         +  I +V +   F    A R     P  ++ +TG++GKS
Sbjct: 67  ASQIVVSPGIPLDTAEVRAAVDMGIDIVGDVELFARALADR-----PACVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++  ++GL     G                   + L      L         +
Sbjct: 122 TVTTLVGEMAAKAGLKVAVGGNIGVP-------------VLDLLDGDHEL-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   ++Y  AK+RL+             
Sbjct: 162 ELSSFQLET--TSSLNCISATCLNISEDHMDRYSDLESYRQAKLRLY------------- 206

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPL 306
             D     +  R          +      + L +         V +    +        L
Sbjct: 207 --DQTKLAIFNRDDLLTRPNEPMNQNSFGLSLPEGDEWGVNHGVLVHGTTEYVAGAQVSL 264

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N LVA  L  + G+D A ++E  ++   +  R E VG +     +    A   
Sbjct: 265 VGSHNQANLLVAMALADSAGVDKAAMVEVAKQFKGLAHRCELVGKHQGVSYVNDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L+ +        I++   G  +      + G +   +  +  +  D  R     
Sbjct: 325 GATIAALQGLSDHEG--QIILIAGGDGKGADFSTLRGALLG-VGQVITLGKDGDR----- 376

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                I     G I   +  EA+  A ++    D++++
Sbjct: 377 -----IAEQFDGAIRVESMQEAVAQAAQLAKPGDLVLL 409


>gi|206889487|ref|YP_002249134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741425|gb|ACI20482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 482

 Score = 78.8 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 150/420 (35%), Gaps = 51/420 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENI 117
           P+A+   A+ +VVS    L      + +    P++  ++ + + LSL       K    I
Sbjct: 71  PEALEN-ADIVVVSPGVPLSTPSIVSAVYKGIPVIGEIELSWQILSLI------KENVKI 123

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG +GKS+ ++   +  +R G      G      +      L               
Sbjct: 124 IGITGANGKSTTSTLTYEFLKRDGKKVQLAGNIGYPMAEVVLKLLN-------------- 169

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               + ++ +E SS  L+   +   K    +  N+  DH+D +   + Y  AK ++F+  
Sbjct: 170 KEIDMEYLVLELSSFQLE--GIKTFKPDFAAILNITPDHMDRYSDMKEYIEAKAKIFQNQ 227

Query: 238 LPKESPAIIY------ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
              +   +        +   Y + V  +             Q  +    K  +I+   + 
Sbjct: 228 NGDDYLILNMDDENTISAIEYLRNVYLKKGKLPHVFYFSRVQNVYGAYLKNDSIYFNARE 287

Query: 292 TISVEGKDFDFL-------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +S + K            F + G   V N + A+ L +  G     + + +++   +P 
Sbjct: 288 EVSDDIKKEMENTVLSVSTFKIKGIHNVENIMAASLLALCSGCKGQSIKDVVQQFPGLPH 347

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V        I        ++++  L++         +++   G D+D     +   
Sbjct: 348 RMEPVREIDGVIYINDSKGTNVDAVKKSLESFPG-----NVILIAGGRDKDGDFSALKSI 402

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +  + ++       E   KI   +   +P ++E  +   A+  A E+    DV+++
Sbjct: 403 VKEKVKALLLI------GEAKHKIADALGDLVPCYLE-SDMKSAVIKAKEIARAGDVVLL 455


>gi|297170220|gb|ADI21258.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 385

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 13/149 (8%)

Query: 8   YKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQG 67
            K   EL   L    +Q  +  I  +  DSR  + G +F+ + G   D  +++ + + +G
Sbjct: 7   NKSLRELSQILGFENVQ-TDANIERIVFDSRIARKGDLFIPLKGKNYDAEIYVEEVLKKG 65

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  ++                    +VVD+    L    +    K+   ++ +TG+ GK+
Sbjct: 66  AS-VITKQKIFGSS-----------IVVDDVYSSLLDICANKLIKNKGKVIFITGSYGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSF 156
           ++   ++ +      +S           F
Sbjct: 114 TIKDMLKSLLGDKCHASKDNENNEFGIPF 142


>gi|18311195|ref|NP_563129.1| cyanophycin synthetase [Clostridium perfringens str. 13]
 gi|18145878|dbj|BAB81919.1| cyanophycin synthetase [Clostridium perfringens str. 13]
          Length = 874

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 144/387 (37%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 276 ---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                      +  +   + N+ +       ++  F      +  + NA+ A    + I 
Sbjct: 639 ENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L++        R  F   +  G  + +DYAH  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKQFKSCEEDNRGRFNMFDVNGINVILDYAHNIDGYKVVIDSLKNLGLKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|149198201|ref|ZP_01875248.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
 gi|149138803|gb|EDM27209.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
          Length = 455

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
             SD+R      +F A  G+  DGH ++  A+ +GA  +VV+    L         +  +
Sbjct: 28  FESDTRKDLTDTVFFAFEGDNFDGHNYLDLAVEKGARVLVVAKEVEL-----LTLDSVAM 82

Query: 93  LVVDNTRKFLSLFASR-LYGKHPENILAVTGTSGKSSVASFVQQI--CQRSGLSSFQIGP 149
           + VD+T K         L  +       +TG+SGK+S  + + Q+    R        G 
Sbjct: 83  IKVDDTVKAWQRLGHFLLQKQKSARRFGITGSSGKTSTNAILSQLLEFIRPKQVLSTHGN 142

Query: 150 TSTISSFAQDNRLTTPS 166
           T+      Q+       
Sbjct: 143 TNNHIGVTQNIVRLKGD 159


>gi|18033116|gb|AAL56990.1|AF329282_2 cyanophycin synthetase [Synechococcus sp. MA19]
          Length = 903

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 122/371 (32%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L++ GT+GK++    +  I +++G          T   +  D  +          A   L
Sbjct: 488 LSIIGTNGKTTTTRLLAHIFKQTGKVVGYTTTDGT---YIGDFLVEAGDNTGPQSAQLIL 544

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEE 236
               V    +E +  G+ +  L       G   N+  DH+                +  E
Sbjct: 545 QDPTVEVAVLETARGGILRSGLAFHAANVGVVLNVAADHLGIGDIDTIDQLAHLKSVVAE 604

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG---------------KFIHLKK 281
            +  +  AI+ ADD     + +R                              +   L  
Sbjct: 605 AVFPDGYAILNADDPRVAAMAERTKANVGYFTMNPDSELVRNHIQKGGVAAVYENGFLSI 664

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      +               P      +  +L A    ++I    A +         
Sbjct: 665 LKGDWTHRIEKAENIPLTMGGRAPFMIANALAASLAAFVQNVSIEQIRAGLSTFRASFSQ 724

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR      N       VDYAH  +S E +   +R+ T+G+ I V G  GDR       
Sbjct: 725 TPGRMNL--FNLGSFHALVDYAHNPHSYEALGCFVRSWTNGKRIGVVGGPGDRRDQDFIT 782

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIE 454
           +GK+A ++ D AIV  DD+ R          II GI        +    +  +AI  A++
Sbjct: 783 LGKLAAEIFDYAIVKEDDDTRGRTRGSAADLIIRGIKQVNPKYKYESILDETQAINKALD 842

Query: 455 MLNKQDVLVVA 465
           +  +  ++V+ 
Sbjct: 843 IAPENSLVVIL 853


>gi|291460707|ref|ZP_06600097.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416666|gb|EFE90385.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 467

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 136/417 (32%), Gaps = 47/417 (11%)

Query: 64  IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRK-FLSLFASRLYGKHPENILAV 120
           I +G E +V ++A      +  A  ++  PI+    +R   L             N + +
Sbjct: 66  IEKGIELVVYTAAIHPDNPELVAAKKAGLPII----SRAGLLGEIMRNY-----RNAINI 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +GT GK++  S + +I   +            +      N     S  ++A+A  Y +S 
Sbjct: 117 SGTHGKTTTTSMIAEILLEADWDPTV--TVGGMMRDIGGNIRVGQSENFIAEACEYTNSF 174

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              + ++E                      N+  DH+D+ +  +   ++  R F E LP+
Sbjct: 175 LSFYPTIEV-------------------VLNVEADHLDFFKDLEDIRHS-FRRFTEKLPE 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               +I  D  + +   +                   +        +          +  
Sbjct: 215 NGLLVINRDIPHYEYFTEGLRCRVLTYGHDRDADYTANFISYDHYAHPSYTLFERGKELG 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + GE  +YN+L A  +  A+GI+   +   L +      RF+  G    G  I  
Sbjct: 275 PISLGVTGEHNIYNSLSAIAVGRALGIELETIRRALHRFQGTDRRFQKKG-EVCGFTIID 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH    +   ++  +     ++ V F      R               AD  ++ D  
Sbjct: 334 DYAHHPQEIAATIEAAKKYPHRKLWVAFQPHTYSRTAALMDDFAGALSQ-ADEIVLADIY 392

Query: 420 PRSE------DPEKIRAEIIHGIPGFIEKGN--RIEAIRTAIEMLNKQDVLVVAGKG 468
              E        E +R  ++          +  RIE     +E L   D+L+  G G
Sbjct: 393 AAREKNTVGVSSEDLRRHMLEQNTNVYYIPDFQRIE--DFLMERLQPGDLLITMGAG 447


>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 813

 Score = 78.4 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 134/391 (34%), Gaps = 40/391 (10%)

Query: 10  DFPELINQLSIFPMQWRERKIN--EVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIA 65
              E+ + +        + K++   +  DSR I  +   IF A  G ++DGHL+I  A  
Sbjct: 3   TISEIQDIIKPRRSYLADTKVSIHYLLYDSRKIAHEKLGIFFAFTG-RQDGHLYIQDAYN 61

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G    ++      +        +  IL V N+   L   A     +    ++ +TG++G
Sbjct: 62  KGVRNFILEKDTEQE----VQMPDANILWVANSWTTLQSLAQHNRSRFQGPVIGITGSNG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+ V  ++ Q+                     +     +P        ++          
Sbjct: 118 KTIVKEWLFQLMS------------------PEYKIYRSPKSYNSQLGVALSLWDLSNQY 159

Query: 186 SVEASSHGL----DQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           ++     G+    +  RL+  IK   G  TN+G  H     ++      K+RLF++    
Sbjct: 160 NLAIIEAGISHVGEMDRLEAMIKPTFGVLTNIGIAHQQGFASKLEKTEEKLRLFKD---- 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A      A   E ++  +             +            +  VT+   GK F
Sbjct: 216 ---AETLIYPAKYLEAVQIPYKPRKLSWGEEEDNQLEVYSIRKPEDGQTYVTLYYGGKTF 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P      + NA+    + +  G D+AL+ E +  L  V  R E     +    I  
Sbjct: 273 GISVPFTDSAAMENAITCVAVMLRFGYDTALIAERIRNLLPVEMRLELKNGKNNTSVIDD 332

Query: 361 DYAHTSNSLEMILKNI-RTITSGRIIVVFGC 390
            Y++   SL++ L  + +       I++   
Sbjct: 333 SYSNDLVSLQIALDFLNQQHQHTNSILILSD 363


>gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 459

 Score = 78.4 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 146/421 (34%), Gaps = 45/421 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS+A +  +          I +V   R+      +RL  +  +  +AV G  GK++  S
Sbjct: 70  VVSTAIADDNPEVVAAKRMGIPIV---RR--GEMLARLMKE--KQGIAVAGAHGKTTTTS 122

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               + + +GL    +     +S    + +L     +      S  S             
Sbjct: 123 MTALVLEMNGLDPTIL-IGGDLSYIGGNAKLGRGDYLVAEADESDGSFLL---------- 171

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                     +  +    TN+  DH+DY+ +++    A  R F   +P+   A++  DD 
Sbjct: 172 ----------LDPVVAVVTNIEDDHLDYYGSRENIVKA-FREFLNKVPESGLAVVCGDDP 220

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++++           S      +                     K    +  +PG   
Sbjct: 221 TVRQLIADLTCPLVTYGSYNSGADYTIDSFALQGETTLGQVSFRGEKLGQLVLNVPGYHN 280

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NAL    +   +G+  + +   L +      R++ +G   +G +I  DYAH    ++ 
Sbjct: 281 LLNALAVVAVGRYVGLSFSQIAAALREFKGAKRRYQLIG-EVKGAKIVDDYAHHPTEIKA 339

Query: 372 ILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--- 427
            L+  R    GRII VF      R +      G+ +   ADI I+TD  P  E P +   
Sbjct: 340 TLQAARQAHPGRIIAVFQPHRFTRTRQLFREFGE-SFAHADILILTDIYPAGEKPIEGVH 398

Query: 428 ---IRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH------ETVHIVTN 477
              I   I        I      EA     + + + D+++  G G       E +  +  
Sbjct: 399 TKLIVDAIAKRPNQQVIYLPTLEEATNFLTQQVTEGDLVLTMGAGDVWTVGRELLQRMGE 458

Query: 478 G 478
           G
Sbjct: 459 G 459


>gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 464

 Score = 78.4 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 136/470 (28%), Gaps = 38/470 (8%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINEVSS-DSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           DL   +  +L       P      +++  +  DSR + AG +FVA+VG   DGH     A
Sbjct: 3   DLTAAEVADLTGGTLAAPHT---TRVHGPTVVDSRKVSAGALFVALVGESSDGHDHAAGA 59

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH----PENILA 119
           +A GA  ++ S                P +VVD+  + L L A+    +     P  + A
Sbjct: 60  VADGAALVLASRELD----------GLPCVVVDDVTRALGLVAAEHLRRLRASGPLQVAA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++    +  +   SG +       +             P              
Sbjct: 110 VTGSVGKTTTKDLLGHVLSESGPTVMPRASFNNEIGLPLTVLEAGPE------------- 156

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + AS+ G D   L GI     S                             L 
Sbjct: 157 TRYLVLEMGASAPG-DLTYLTGIAPPDVSIVLAVGAAHLGGFGGLDGVARAKSEIVTGLR 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            E  A++ ADD     +   A +      +V   G   H   V  +       +  E   
Sbjct: 216 PEGVAVLNADDHRVVAMRDLAPSRVVTFGTVRDAGVRAHRVSVDRLGRVSCQVVVGERTA 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              L  +                                    P R            I 
Sbjct: 276 DLSLRLVGEHHLTNALAALTAAVELGVDLDTAAALVSSVDAASPHRMAVTERPDGVTVID 335

Query: 360 VDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAI 414
             Y    +S+   LK +  +     R + V G     G   + +   +G++ + L    +
Sbjct: 336 DSYNANPDSMRAALKALAVVAGRDRRSVAVLGEMLELGPDSRDQHDEIGRLVVRLNIKLL 395

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V      S   +    E   G      +     A R   E L   DV++V
Sbjct: 396 VVVGAGASGLADGATQEGSWGEEVVEVEDVPA-AERFLAEELRSGDVVLV 444


>gi|227485084|ref|ZP_03915400.1| possible tetrahydrofolate synthase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236917|gb|EEI86932.1| possible tetrahydrofolate synthase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 424

 Score = 78.4 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 5/159 (3%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            Q+YNA +A  +      D  L  + +++          V   S   R+ +D +H   S+
Sbjct: 255 HQIYNASLALMVLDYFKKDFNLSEDDIKEGIRETYNPGRVDLVSTNPRVLLDGSHNKESI 314

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEK 427
           + +L +++     ++IV F    D+D      + +    LAD  I+T  DDNPR+ D + 
Sbjct: 315 DALLASLKKFDYDKLIVGFSILKDKD---HKDIIRKIAGLADELIITHIDDNPRALDTQI 371

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I  E            N  +A   +++    +D+++  G
Sbjct: 372 IDEEAKAYASDIHVIENNKQAFEFSLKEAKDKDLVLWCG 410


>gi|302388641|ref|YP_003824462.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
 gi|302199269|gb|ADL06839.1| cyanophycin synthetase [Thermosediminibacter oceani DSM 16646]
          Length = 875

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 133/381 (34%), Gaps = 30/381 (7%)

Query: 109 LYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
              + P   ++AVTGT+GK++    V  I    GL                  R      
Sbjct: 471 FPQEPPRFPLVAVTGTNGKTTTVRMVANILSAHGLKVGMTCTDGVYVGSMCIRR---GDC 527

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAY 226
                A   L    V    +E +  GL +  L       G  TN+  DH+          
Sbjct: 528 SGPESAKMVLLDPSVEAAVLEIARGGLIRGGLAYEYADVGIITNITGDHLGQDGVNTLED 587

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV----------LSVGYQGKF 276
                 L  E +  E  A++ ADD  S EV KR  +                 +   G+ 
Sbjct: 588 LMFVKSLVAEQVKPEGYAVLNADDITSVEVKKRVKSRVIFFSLQEDNLVLRKHIAEGGRG 647

Query: 277 IHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           +++K       +   ++S ++  D            V NAL AA    A+ + +  +   
Sbjct: 648 VYVKDGFIFFQEGDKSVSLMKVADIPAAMNGRARHNVQNALAAAAAGWALDVPAETIRRA 707

Query: 336 LEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           L          PGR      +    RI +DY H   +LE I+   R++   R++ V    
Sbjct: 708 LSDFRCDESTNPGRLNI--ISEGNIRIILDYGHNPAALEAIIGTARSMNPARMVGVIASP 765

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKG 443
           GDR       +G++A       I+ +D +PR   P ++ + ++ G               
Sbjct: 766 GDRRDEAIVKLGQVAGRGFQRLIIKEDEDPRGRKPGEVASLLLEGALSAGLKKDQIDVIL 825

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
              EAI  A+E     D++V+
Sbjct: 826 KEEEAITFALENAQDGDLIVI 846


>gi|325294545|ref|YP_004281059.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064993|gb|ADY73000.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 458

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 138/430 (32%), Gaps = 51/430 (11%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFL 102
           +F+        G           A  ++ SSA    +       N   P++   +    L
Sbjct: 52  VFIGHKAENVHG-----------ANLVIHSSAVKFDNVELQEAKNLGIPVIPRADI---L 97

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S       G      +AV GT GK++ +S +  I   +GL            S       
Sbjct: 98  SDIMRFKEG------VAVAGTHGKTTTSSMIATIFHIAGLKPTI--LVGGRLSILGGVNA 149

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            +                     +   +           +       TN+  DH+DY+ +
Sbjct: 150 QSGD------------------GNWLVAEADESDGTFLKLTPTFSVITNIDADHVDYYGS 191

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +    A +     +       +        + V         +++    +   ++ K++
Sbjct: 192 FENLKEAFLDFANRVSFYGKVFLCGECQNVKEIVGSIY---KRKLIYGFSEKFDLYAKEI 248

Query: 283 CAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             +       +  + K        +PG+  + NAL A G+ + +G+    + E LE    
Sbjct: 249 VPVGLGTIFDVYYKSKKLGRVKLNVPGKHNILNALGAIGVSLEVGVSFNQIAESLEMFRN 308

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-- 399
              R E  G    G     DYAH    +E   K +++    R IVV        +     
Sbjct: 309 ANRRMELKG-TVNGITFIDDYAHHPTEIETSYKALKSSFPDRRIVVLFQPHRFSRTNLLW 367

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
               K+  ++ D   ++D  P  E P K I A+ +    G +  G+  +A RT    L  
Sbjct: 368 KEFVKVLKEI-DNLFISDIYPAGEKPIKGINAKNLARECGAVYCGSLKKACRTIKLELKP 426

Query: 459 QDVLVVAGKG 468
            DV +  G G
Sbjct: 427 GDVFLSMGAG 436


>gi|167037933|ref|YP_001665511.1| FolC bifunctional protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116348|ref|YP_004186507.1| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856767|gb|ABY95175.1| FolC bifunctional protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929439|gb|ADV80124.1| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 427

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 131/398 (32%), Gaps = 39/398 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R+ LS   +    +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRRLLSYMGN---PQKNLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS------- 208
             +                       ++ +  E  +H  +   +  I             
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISKMVKEGYNHPTEFEVITAIAFKYFYDEKVDFV 139

Query: 209 -----------FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN     +    T   Y +               A I           
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQKGVVVSFY 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++       + +   +  ++ +     V          I    K  D    L GE Q+YN
Sbjct: 200 QQPEAMKVIIEACEVRNAYLTVLEKSNVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYN 259

Query: 315 ALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           A +A      + +     +   ++        PGR E +        + +D AH    + 
Sbjct: 260 AALAVESVEKLRMYGYEVTEKDIKEGLYRAKWPGRLEVMRKKPY---VVIDGAHNPQGMT 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           ++ ++++     ++I+V G   D+D  K   M  I +  AD+ I T   P SE   K  +
Sbjct: 317 VLKESLKLFKYDKLILVIGMLKDKDTQK---MLDIIVPEADMIITTT--PISERAYK-AS 370

Query: 431 EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E+   I     I   N  +A++ A+++  ++D+++  G
Sbjct: 371 ELAQKIDKENVIPIENIEKAVKYALDIAKEEDMVLFCG 408


>gi|254454230|ref|ZP_05067667.1| cyanophycin synthetase [Octadecabacter antarcticus 238]
 gi|198268636|gb|EDY92906.1| cyanophycin synthetase [Octadecabacter antarcticus 238]
          Length = 957

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 129/376 (34%), Gaps = 35/376 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TGT+GK++V+  V  I + SG                   +     P      L     
Sbjct: 500 ITGTNGKTTVSRMVAHIHKLSGNMVGLATTDGVYIDGNLTVKGDLTGPRAAQMILRDP-- 557

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V    +E +  GL +  L   +   G+  N+  DH+     +     A+++     + 
Sbjct: 558 -TVDAAILETARGGLLRSGLGYERCDVGAVLNIQADHLGLKGVETIEDLARVKRIVIEVA 616

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGK 298
            +  A++ ADD    ++ +         +++      +    ++       +  ++    
Sbjct: 617 TD-TAVLNADDELCLKMAEHTKADHICYVTMNAHHPLVREHVRIGGRAVVLEQGMNGHMI 675

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVLEHLEKL---- 339
                         +               NA+ AA +C ++G     + + L       
Sbjct: 676 TIYEHSSNIQLMWTHLIPATIDGKAMHNVQNAMFAAAICYSMGKSLEDIRQGLRTFATSY 735

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK 398
              PGR           ++ +DY H   ++E + K    +   GR I+ F   GDR    
Sbjct: 736 FQAPGRLNI--FEEHPFKVILDYGHNPAAIEAMTKLCTQLEPKGRKIISFSMPGDRRNED 793

Query: 399 RPIMGKIALDLADIAIV-TDDNPR----SEDPEKIRAE-IIHGIPG--FIEKGNRIEAIR 450
                 I     D  I   DD  R    SE P+ +R   I +G+P        + +EA+ 
Sbjct: 794 YAAAAAIVAGKFDHYICRVDDGLRGRGPSEVPDLLREALIENGVPDDLIQVIPDEVEAVD 853

Query: 451 TAIEMLNKQDVLVVAG 466
            A++M    D++++ G
Sbjct: 854 AALKMGQTDDLVLLFG 869


>gi|149190163|ref|ZP_01868439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
 gi|148836052|gb|EDL53013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
          Length = 82

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 425 PEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKK 481
           P  I  +++ G+      I +  R +A + A+      D++++AGKGHE   ++      
Sbjct: 8   PAAIVEDMLAGMNQSQAAIVEHKRFDAAQVAMNQAGASDIILLAGKGHEDYQVIGTETVH 67

Query: 482 MSVDCDIIREILGLIL 497
              D +    +LGL L
Sbjct: 68  Y-SDRESAATLLGLTL 82


>gi|114321344|ref|YP_743027.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227738|gb|ABI57537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 449

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 132/407 (32%), Gaps = 54/407 (13%)

Query: 61  PQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
             A+  GA  I+VS   S          R+  P++                       + 
Sbjct: 64  DAALLAGAGEIIVSPGVSLREPALETARRAGVPLI---------GEI-ELFARHADAPVA 113

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GKS+V + V ++ + +G      G   T +    D   T P             
Sbjct: 114 AITGSNGKSTVTTLVGRMAEAAGRRVAVGGNLGTPALALLDGE-TRPDA----------- 161

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E SS  L+      +     +  N+  DH+D H +     +A   +   + 
Sbjct: 162 ------YILELSSFQLET--THSLAPRVAAVLNISADHMDRHGS----VSAYAGIKARIF 209

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 ++  DD     V+      G  VL             V        + ++ E  
Sbjct: 210 HGAGVQVLNLDDP----VVAAMAQPGRTVLGFSLASNPRRGAGVADHRGAPWLHLNGEPV 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  LPG     NAL A  L   +G+  A + E L +   +P R E+V  ++     
Sbjct: 266 LPAADLRLPGLHNRANALAALCLGQGLGLPVAAMAEALRRFTGLPHRTEWVAEHAGVRWY 325

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTD 417
                    +    ++ +         VV   GGD +     P+   +        ++  
Sbjct: 326 NDSKGTNVGAAVAAIRGLAG------PVVLIAGGDGKGADFLPLADALREKGRAAVLIGR 379

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D PR        A+++ G+       +  +A+R A  +    D +++
Sbjct: 380 DAPR-------LAQVLSGVVPVERAADMRDAVRRAANLARSGDAVLL 419


>gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806]
          Length = 877

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 128/370 (34%), Gaps = 29/370 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT+GK++ +  +  IC+++G      G T+T   +  D  +          A   L
Sbjct: 491 LAITGTNGKTTTSRLISHICRQTGKVV---GFTTTDGVYIDDYLVEKGDNTGPYSASMIL 547

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEE 236
               V    +E +  G+ +  L   +   G   N+  DH+           AK   +  E
Sbjct: 548 KDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVVAE 607

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--- 293
           ++  E  A++ ADD  +  + ++                     +   +    +      
Sbjct: 608 VVSAEGYAVLNADDPLTASMAEKVKGRVAYFSMSPDNPIIHDHIRRGGMAAIYENGYLSI 667

Query: 294 --------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----V 341
                     E  +          F + NAL A       GID  L+ + +         
Sbjct: 668 LEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFKPSVAQ 727

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR              +DYAH     E +   +    SG  + V G  GDR      +
Sbjct: 728 TPGRMNLFDLGHH--HALIDYAHNPAGYEAVGGFVGN-WSGEKVGVVGGPGDRRDDDLIL 784

Query: 402 MGKIALDLADIAIVTDDNP-----RSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIE 454
           +GK++  + D  IV +DN      R E  + I   I             +  EA+  A+ 
Sbjct: 785 LGKLSAQMFDRIIVKEDNDTRGRRRGEVADLILRGISQENASLRPEVILDETEALEKALS 844

Query: 455 MLNKQDVLVV 464
            +++  ++V+
Sbjct: 845 TVSEGGLVVI 854


>gi|284048638|ref|YP_003398977.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952859|gb|ADB47662.1| UDP-N-acetylmuramate/alanine ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 461

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 137/423 (32%), Gaps = 47/423 (11%)

Query: 59  FIPQA---IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           FI  A   I + AE +VVS+A      +     R   P++   +         + L  +H
Sbjct: 56  FIGHAACQIER-AEVVVVSTAIHPDNPELVEAHRRQVPVIHRSDVL-------AWLMNRH 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G  GK++ +S +  I    GL    +     +++   +        +     
Sbjct: 108 --KGIAVAGAHGKTTTSSMLSCITSDCGLDPTIV-VGGIVNNLGSNAASGKSDWVVAEAD 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                               TN+  DH+D++ +Q+    A  + 
Sbjct: 165 ESDGSFLKFN--------------------PYIAVVTNIEDDHLDHYGSQENIQKAFAQF 204

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             ++       + Y +D   + + +                 +     +          +
Sbjct: 205 VSQIKEDGCAVLCYDND-RVRTIGEATDKRVISYGIDSQDADYQAKNIIYGTDGTHFDVV 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       +PG   V N+L A      +G++   +L  LEK      RFE  G  +
Sbjct: 264 YQGETIGQGHLIIPGRHNVLNSLGAIAAARELGLELPDILTSLEKFSGAKRRFETKG-KA 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
            G  +  DYAH    ++  LK  R     R+IVVF      R Q        +A   AD 
Sbjct: 323 DGIWVVDDYAHHPTEIQATLKAARQTHPERLIVVFQPHRYTRTQLLLDEFA-VAFKDADK 381

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            IVTD    SEDP      E +  ++            ++   +          D+++  
Sbjct: 382 LIVTDIYAASEDPIPGVSGEMLADKVRETTGQQVEYLPDQPTILDHLEHEAQSGDLIMTI 441

Query: 466 GKG 468
           G G
Sbjct: 442 GAG 444


>gi|325265594|ref|ZP_08132285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
 gi|324982942|gb|EGC18563.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
          Length = 445

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 120/360 (33%), Gaps = 41/360 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
             + L  + P+ I+A+TG++GK++  S V  +C + GL +   G   T    A   R   
Sbjct: 98  ILADLLSRQPDKIIAITGSNGKTTTTSLVGHLCAQCGLDTVVAGNIGTPVLEAWLARKGK 157

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P                     +E SS  L+   L  +   A +  N+  DH+D +    
Sbjct: 158 P----------------ADVWVLELSSFQLETTPL--LDADAAACLNISEDHLDRYDDLL 199

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y  AK  +F     +   A     D      MKR             Q           
Sbjct: 200 DYARAKDMIFNGKAVQVLNA-----DDAFCRAMKRDGRTVHYFSLQQPQDYHWQAGAGSL 254

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            H +  +    +        PL G   + N L A  LC +IG+    +L H++    +P 
Sbjct: 255 HHQEVLLMPQTDI-------PLQGSHNMANVLAALALCESIGLPRDRLLAHVKTFKGLPH 307

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E VG  +    I         +    +  +        I +   G  + Q   P+   
Sbjct: 308 RVEKVGEKNGITFIDDSKGTNVGATVAAIAGLPE-----KIWLIAGGMGKGQDFTPLR-D 361

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  + A    +        D  KI A++       +      EA++ A       D++++
Sbjct: 362 VLREKAGAVFLI-----GVDAPKIAADLDGCGVDLVFCETLPEAVQAAFARAQSGDIVLL 416


>gi|125975108|ref|YP_001039018.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|256003237|ref|ZP_05428229.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281418473|ref|ZP_06249492.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|189029009|sp|A3DIP6|MURC_CLOTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125715333|gb|ABN53825.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|255992928|gb|EEU03018.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281407557|gb|EFB37816.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|316939274|gb|ADU73308.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           1313]
          Length = 469

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 87/273 (31%), Gaps = 9/273 (3%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+DY +  +   NA ++    +           D      +     N
Sbjct: 180 HPYLAVVLNIEADHLDYFKDIEHIKNAFLKFIRLVPENGYVVACADDQNVLSILKDVHCN 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                L+                       +    +  +    +PG   + NAL +   C
Sbjct: 240 IITFGLNSKNAMWTAEDISFNENGFAAFTVLKDNERITNIQLKVPGIHNISNALASIAAC 299

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+G     + + LE    +  RFE  G  +   ++  DYAH  + ++  LK  R+    
Sbjct: 300 YALGCSIENIKKGLESYTGIHRRFELKGIEN-NIKVVDDYAHHPSEIKATLKAARSGNYP 358

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI-----RAEIIHG 435
           RI  VF      R +       K A    D  I+TD     E D  +I       +I   
Sbjct: 359 RIWTVFQPHTYTRTKFLLDEFSK-AFKDTDKVIITDIYSAREKDTGEIHSRILAEKIREN 417

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               I   +    +    +  +  D+++  G G
Sbjct: 418 GQDAIYLPDFEGIVEYLKKNASPGDLIITMGAG 450


>gi|325280813|ref|YP_004253355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312622|gb|ADY33175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 428

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 70/401 (17%), Positives = 136/401 (33%), Gaps = 45/401 (11%)

Query: 30  INE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           I    +++DSR I  G IF+A+ G   DG+ +              ++A   Q  +  I 
Sbjct: 11  IRGHRITTDSRQIIRGDIFIALKGENFDGNRY--------------AAAALEQGAALAII 56

Query: 88  SNTPIL-----VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            N   L     +V ++  FL   A     +    IL +TGT+GK++       +  +   
Sbjct: 57  DNADYLSPGCELVADSLLFLQQLAHYHRQQLHIPILGITGTNGKTTTKELCHAVLSKKFK 116

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           +    G  +               P+ L    S   +     V + A+  G  +   +  
Sbjct: 117 TFATQGNFNNH----------IGVPLTLL---SMDETTEFGIVEMGANHPGEIKTLCEIA 163

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G  TN+G  H++   + +     K  L++ LLPK  P  +   D    ++ +    
Sbjct: 164 DPDFGIITNIGHAHLEGFGSYENIIATKKALYDYLLPKNGPVFVNTGDPLLMQLSRDHKR 223

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                     +G      ++         ++     D      L G +   NA+ A+ + 
Sbjct: 224 YTYGQEGDLLKG------EIKQTVPYLVYSLKTRKGDLYVKTHLVGGYNFDNAMAASAIG 277

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +  GID   +   +E       R + + +  R   I   Y    +S+   + N   +   
Sbjct: 278 MHFGIDPLDIQTAIENYRPSNLRSQLIRSG-RNTIILDAYNANPSSMRASVGNFCEMPGE 336

Query: 383 RIIVVFGCG---GDRDQGKRPIMGKIALD-LADIAIVTDDN 419
             +V+ G     G  +      + ++      D   +  +N
Sbjct: 337 HKVVILGEMLELGTENAAAHEEIVRLTQQGNFDRIFLIGNN 377


>gi|226307043|ref|YP_002767003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
 gi|226186160|dbj|BAH34264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
          Length = 519

 Score = 78.0 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 145/505 (28%), Gaps = 73/505 (14%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +      E++   ++  +     ++   V  DSR    G +F+A+ G + DGH       
Sbjct: 4   MTLSRIAEIVGG-TLHDVDDPSTQVTGTVEFDSRKAGPGGLFLALPGARVDGHDHAE--- 59

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN----------------------TRKFL 102
                    + A       A      P +VV +                          L
Sbjct: 60  --------AAVAAGAVAVLAARPVGVPAIVVPSVPNDGPSAVMLLEHDTDGSGAAVLHAL 111

Query: 103 SLFASRLYGKHPE---------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            L A  +  +             ++ VTG++GK+S    +  + +  G      G     
Sbjct: 112 GLLARAVVDELAAEGSASGGGLTLVGVTGSAGKTSTKDLIAALLRERGEVVAPPGS---- 167

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                +N L  P        L          + + A   G             G   N+G
Sbjct: 168 ----FNNELGLP-----WTVLRADEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVG 218

Query: 214 RDHIDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             H+    +++A   AK  L E      +    +   D      M     A    +    
Sbjct: 219 TAHLGEFGSREAIAVAKGELVEALPSAADGGVAVLNADDRMVAAMASRTKARIVFVGQSE 278

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                    V     +   T++           + GE  V NAL AA + +  G+  A +
Sbjct: 279 DCDVRATDVVVDDQARASFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADI 338

Query: 333 LEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI------RTITSGRII 385
              LE        R E          +   Y    +S+   LK +            R  
Sbjct: 339 ARVLEGTKAASARRMEVTERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSW 398

Query: 386 VVFGCGGDRDQG---KRPIMGKIALDL--ADIAIV-TDDNPRSEDPEKIRAEIIHGIPGF 439
            V G  G+       +   +G++A+ L  + + +V T    R+     +           
Sbjct: 399 AVLGEMGELGPESVVEHDAIGRLAVRLDVSKLIVVGTGRTSRAMHQGAVME--GSWGDES 456

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +   AI      L   D+++V
Sbjct: 457 VVVPDAAAAIAILEAELEPGDLVLV 481


>gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922]
 gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922]
          Length = 824

 Score = 78.0 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 145/394 (36%), Gaps = 29/394 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHL 58
           MK +     +  EL   L+   +  +E+ I E   D+R I      +F+ + G ++ G  
Sbjct: 1   MKTK--TNYNLGELAQILNAKLIGDKEQTIEEYYFDTRTIVCPTNGLFITLKGLQKSGAY 58

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A  +G  + +VSS        A  +     L+V +    L + A     +    + 
Sbjct: 59  YLDEAYQKGIRSFLVSS------IPAQPKDGANYLLVQDVLVALQMLAKHHRQRFTLPLF 112

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GK+ V  ++ Q+       +         S  + +++L  P  + L    +   
Sbjct: 113 GITGSNGKTVVKEWLYQLLWNEYNIA--------RSPKSYNSQLGVPFSVLLIDEHND-- 162

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              +       S     Q     ++      TN+G  H++    +++    K++L E   
Sbjct: 163 ---LGIFEAGVSQPNEMQALRCILQPTTAILTNIGSAHLENFLDRRSLALEKIQLLEAAQ 219

Query: 239 PKESPAIIYADDAYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               PA    DD   +E++          R+         + LK+   I+ +  + I + 
Sbjct: 220 EIIYPA----DDELIEELISSNPVFDSKRRITFGKSDKATVQLKQYQTINGQSSIDIEIS 275

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G  F+ + P   +  + NAL+      ++  +        EKL  +  R E     +   
Sbjct: 276 GVLFNIIIPFTDQASIQNALICCASIYSLNKNLNDYKSKFEKLLPIEMRLEIKEAINNSI 335

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            I   +     SL+  L  +   +  R ++V   
Sbjct: 336 LINDAFNSDLISLKNALDTLAQQSRERKVLVLTD 369


>gi|88707116|ref|ZP_01104810.1| cyanphycin synthetase [Congregibacter litoralis KT71]
 gi|88698628|gb|EAQ95753.1| cyanphycin synthetase [Congregibacter litoralis KT71]
          Length = 928

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 118/373 (31%), Gaps = 28/373 (7%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRLTTPSP--IYLAKAL 174
           A+TGT+GK++ +  +  I + SGL+  Q                 +T P+   I L    
Sbjct: 495 AITGTNGKTTTSRMLAHILKMSGLTVGQTSTDGVYIDGRLTVAGDMTGPTAAQIVLRDPS 554

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +        +  S  G  +  +     IA     L          +      ++   
Sbjct: 555 VNAAVMETARGGILRSGLGYQRSNVSACLNIAADHLGLKGVDTLEDLAEVKRVVVEVARD 614

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +L  +    +   D  + E +          L   +         +    N   +T+ 
Sbjct: 615 AAVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLEQGINGGMITLY 674

Query: 295 VEGKD---------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE----HLEKLHV 341
            E                        V NA+ AA L   + +D   + +           
Sbjct: 675 DENGHNIPLLWTHLIPATLEGRALHNVQNAMFAAALAYHMHVDLENIRQGLRTFDSTFFQ 734

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRP 400
            PGR      +    ++ +DYAH   +++M+   +     G R IVV    GDR      
Sbjct: 735 SPGRLNV--YDKHPFKVILDYAHNPAAVKMVCDVVDRYEIGGRKIVVLTMPGDRRDEDIV 792

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTA 452
            +  IA    D  I   DDN R  +P ++   +  G+                 +A + A
Sbjct: 793 EVAGIAAGHFDHYICRRDDNLRGREPGEVPGLLKRGLLEGGVSDDSIQLIEREEDANQAA 852

Query: 453 IEMLNKQDVLVVA 465
           +EM    D++++ 
Sbjct: 853 LEMARGGDLVLIL 865


>gi|257056721|ref|YP_003134553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586593|gb|ACU97726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 487

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 78/499 (15%), Positives = 146/499 (29%), Gaps = 75/499 (15%)

Query: 5   DLIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF---- 59
           +L   +  E ++            ++   V  DSR +  G +FVA+ G + DGH F    
Sbjct: 3   ELTLAEIAEAVSGRLHRADGGE--RVTGSVEFDSRKVTDGGLFVALPGERADGHDFAASA 60

Query: 60  -------------IPQAIAQGAEAIVV---------SSAYSLQDFSATIRSNTPILVVDN 97
                        +       A A++V           + +L   +    +     +   
Sbjct: 61  VAAGAAGVLAAREVD------APAVIVPPLPPGQAHERSVALAGDTDGSGAAVLAALAAL 114

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R  ++  +     +    ++ VTG+SGK+S    + Q+ +  G +    G  +      
Sbjct: 115 ARHVVTRLS-----ETGLTVVGVTGSSGKTSTKDLIAQLLEPLGPTVAPPGSFNNELGHP 169

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                          AL          + + A   G             G   N+G  H+
Sbjct: 170 W-------------TALRADRKTRHLVLELSARGPGHIAELAAVAPPRIGVVLNVGSAHV 216

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               +Q+     K  L E  LP E  A++  DD +  E+ +R       V          
Sbjct: 217 GEFGSQEGIARTKGELVEA-LPAEGVAVLNVDDPFVAEMAQRTSARVVGVGESPKADVRA 275

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              ++          ++   +    L  +           AA         S +      
Sbjct: 276 ENVRLDEHARASFDLVAGGERAEVRLQLVGEHHVGNALAAAAVALELGMPLSEVAAGLSA 335

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV----VFGCGGD 393
                  R E    +     +   Y     S+   LK + ++TS R       V    G 
Sbjct: 336 ATRRSERRMEVTTRSDGVTVLNDSYNANPESMRAALKTLASMTSSRRSWAVLGVMSELGA 395

Query: 394 RDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIP-------GFIEKGNR 445
                   +G++A+ L  +  +V  +           A +  G           +   + 
Sbjct: 396 DSVSAHDEIGRLAVRLNINRLVVVGEQ---------AAAMHRGASHEGSWGEESVLVPDT 446

Query: 446 IEAIRTAIEMLNKQDVLVV 464
             A+    E L   DV++V
Sbjct: 447 DAAVALLREQLRPNDVVLV 465


>gi|152967147|ref|YP_001362931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361664|gb|ABS04667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 487

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 149/474 (31%), Gaps = 43/474 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L   +  EL               +   V  DSR    G +FVA+ G + DG      A+
Sbjct: 4   LTAAEVAELTGG--RLAAGTASTPVTGPVVVDSRAAGPGSLFVALPGERVDGADHAAGAV 61

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN-----ILA 119
           A GA  ++             + +   ++VV++    L   A  +  +         ++ 
Sbjct: 62  AAGASLVLAEREVE-------LPAGAALVVVEDGVTALGRLARGVLERLRSTGSGPLVVG 114

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++    + ++   +G      G  +                + L         
Sbjct: 115 VTGSQGKTTTKDLLARVLAPAGPVVAPAGSFNNEIGAPLTVLRADRGTVTL--------- 165

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                V + A   G         +   G    +G  H     + +    AK  L E  LP
Sbjct: 166 ----VVEMGARGLGHIAALCAIARPDVGVELVVGAAHAGEFGSLETTARAKGELVEA-LP 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            E  A++ ADD     +  R           G       L        + + T+   G  
Sbjct: 221 AEGLAVLNADDDRVAAMATRTRARVL-TFGRGAHADVRALDVELDALARPRFTLQHGGGR 279

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRI 358
                 L GE QV NAL AA + +  G     V   L       PGR + V        +
Sbjct: 280 ARVQLQLHGEHQVTNALAAAAVALGTGRPLEEVAASLSAATELSPGRMQVVERPDGVTVV 339

Query: 359 YVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCG---GDRDQGKRPIMGKIALDL-ADI 412
           +  Y    +S+   LK +  +     R   V G     G   + +  ++G+  + L  D 
Sbjct: 340 HDAYNANPDSMRAALKALVGMAGAGRRTWAVLGEMLELGPASREEHDLLGRTVVRLDVDQ 399

Query: 413 AIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +V     R          ++ G          +  +A+      L   DV++V
Sbjct: 400 LLVVGAGAR----PVYTGAVMEGSWGEEAAFATDVDDALEFLRARLRPGDVVLV 449


>gi|15841649|ref|NP_336686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|13881901|gb|AAK46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 510

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 151/512 (29%), Gaps = 82/512 (16%)

Query: 5   DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
           +L      E++      I P     R++   V  DSR I  G +F+ + G + DGH    
Sbjct: 3   ELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLRLPGARADGHDHAA 62

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE------ 115
                       + A       A      P +VV       ++ A  L   +        
Sbjct: 63  -----------SAVAAGAAVVLAARPVGVPAIVVP-PVAAPNVLAGVLEHDNDGSGAAVL 110

Query: 116 -------------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
                               I+ +TG+SGK+S    +  +    G      G  +     
Sbjct: 111 AALAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGH 170

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                  T                    + + A  HG      +      G   N+G  H
Sbjct: 171 PWTVLRAT-------------RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAH 217

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +    +++     K  L  + +P     ++ ADD     + K       RV        +
Sbjct: 218 LGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVW 276

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +  +  + + T+       +    + G+ QV NAL AA + +  G     V   L
Sbjct: 277 AGPVSLDELA-RPRFTLHAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAAL 335

Query: 337 EKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGC 390
                V   R +          I   Y    +S+   L+ +  I        R   V G 
Sbjct: 336 TAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGE 395

Query: 391 G---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPE---KIRAEI-IHGIPGFIE 441
               G+    +   +G++A+ L  + + +V     RS        +  E    G      
Sbjct: 396 MAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMHHGAVLEEAWGSGEATADH 453

Query: 442 KGNRIEAIRTA---------IEMLNKQDVLVV 464
             +R  A+  A            L   DV++V
Sbjct: 454 GADR-TAVNVADGDAALALLRAELRPGDVVLV 484


>gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
 gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
          Length = 445

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 141/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A         
Sbjct: 102 AGIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEA--------- 152

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L +              +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 153 --ELQREGKKADMW-----VLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHKADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGCLKQGNEDLIATQDIPLQGLHNAANVMAAIALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ-----NPLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++       I+     EA++ A       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMIDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
 gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
          Length = 445

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F           +   D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLCDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  KIR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GIDAPKIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|37523895|ref|NP_927272.1| cyanophycin synthetase [Gloeobacter violaceus PCC 7421]
 gi|35214901|dbj|BAC92267.1| cyanophycin synthetase [Gloeobacter violaceus PCC 7421]
          Length = 876

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSN 367
           F + N L A       GI    +   L      P +        +  G  + VDYAH   
Sbjct: 688 FMIQNVLAATLAAFLHGIKIDDIRAGLGSFVPSPAQTPGRLNVFDVNGFEVIVDYAHNPA 747

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPE 426
             E I + +  + + R I V G  GDR       +G +A  + D AIV  DD+ R   P+
Sbjct: 748 GYEAIQQVLERMDNPRKIGVIGGPGDRRDEDLRKLGYLAAGMFDAAIVKEDDDRRGRAPD 807

Query: 427 KIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  + I+ GI        F    +  EA+  A+      D++V+
Sbjct: 808 EAASLIVEGIKQRNPEFPFQTILDEAEAVEHALRNAACSDLVVI 851


>gi|163746132|ref|ZP_02153491.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
 gi|161380877|gb|EDQ05287.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
          Length = 472

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 138/427 (32%), Gaps = 47/427 (11%)

Query: 56  GHLFIPQAIAQ--GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
           G +F  QA     GA  IV+SSA      +     R   P++        L         
Sbjct: 58  GRIFEGQAAENIEGAAVIVISSAIKPGNAELDEARRRGLPVVRRAEMLAELMRL------ 111

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
              ++ +AV GT GK++  + V ++    G+    +     I ++  + R+         
Sbjct: 112 ---KSNIAVAGTHGKTTTTTLVAELLVAGGIDPTVV-NGGIIHAYGSNARMGQGE----- 162

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                        + VEA       +RL          TN+  +H+++            
Sbjct: 163 ------------WMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGDFDTLRQ-GF 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
             F   +P    A+   D    + ++ +  +          Q     +         +  
Sbjct: 207 LNFVSNIPFYGLAVCCTDHPEVQSLVGKLTDRRVMTYGFNAQADVRAVGLHYKDGVAHFD 266

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               S +    +   P+PG+  V NAL A  +   +G+    +   L     V  RF  V
Sbjct: 267 VHLQSEDMVIENCALPMPGDHNVSNALAAVTVARHLGMKLEQIRAALGSFGGVNRRFTRV 326

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G    G  +  DY H    +  +LK  R  + GR+I V                    + 
Sbjct: 327 G-EVDGVTVIDDYGHHPVEISAVLKAARQASKGRVIAVHQPHRYSRLSHHFDEFCACFND 385

Query: 410 ADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDV 461
           AD+  +TD     E+P         +   I HG        +  EA+ +  +      D+
Sbjct: 386 ADVVGITDVYAAGEEPIPGADRDGLVAGLIQHGHRHAYAVED-AEALTQLVLREARPGDM 444

Query: 462 LVVAGKG 468
           +V  G G
Sbjct: 445 VVCLGAG 451


>gi|145223571|ref|YP_001134249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate--D-alanyl-D-alanyl ligase
          [Mycobacterium gilvum PYR-GCK]
 gi|145216057|gb|ABP45461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium gilvum PYR-GCK]
          Length = 504

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 5  DLIYKDFPELINQ-LSIFPMQWRER-KINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61
          ++  +   E++   L+       +R ++   V  DSR + AG +F+A+ G + DGH F  
Sbjct: 3  EMSLRRIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGHDFAA 62

Query: 62 QAIAQGAEAIVVSS 75
           A+A GA A++ + 
Sbjct: 63 TAVASGAVAVLAAR 76


>gi|260576884|ref|ZP_05844867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
 gi|259020921|gb|EEW24234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
          Length = 478

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 65/450 (14%), Positives = 136/450 (30%), Gaps = 32/450 (7%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           + VS D+R +Q G +FVA+   + DGH F+             ++A  +      + +N 
Sbjct: 25  HGVSIDTRTLQPGDLFVALKDVR-DGHDFVAA------ALAKGAAAALVSRIPEGVAANA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +    L         +    ++ VTG+ GK+S    ++ +    G         
Sbjct: 78  PLLIVPDVLAGLEALGRAGRARARARVIGVTGSVGKTSTKEMLRCMLLGQGSVHAAEASY 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA      ++     + +  +  G         +L     T
Sbjct: 138 NNHWGV----------PLTLA---RLPATADFAVIEIGMNHPGEIAPLARMARLHVALIT 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            +   H+      +     K  + + L P     +          +   +        + 
Sbjct: 185 TIATAHLAAFDGLEGIAREKATIIQGLEPGGIAVLPTDLAVSPVLLRAASAVRSLTFGTA 244

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                 +    + A     Q +     +      P           +A    +++    A
Sbjct: 245 KSADFQMLDVTLTADATIVQASHHGARRLLKLSAPGRHFAMNAMGCLAVAEALSLDPTIA 304

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                  +     G  E +  ++        +D A+ +N   +         S     V 
Sbjct: 305 THDLGRWQPPAGRGMRERIVLDAVDDLSFELIDDAYNANPASLAAALEVLAASQPTDGVG 364

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI--RAEIIHGIPGFIEKGNRI 446
                R       M ++    A + +    NP       I     ++ G+   + K  R 
Sbjct: 365 RIQHGRRIAILGDMLELGEGEAALHVAVAANPHLAAISTIHCVGPLMRGLHDALPKRQRG 424

Query: 447 E--A-----IRTAIEMLNKQDVLVVAG-KG 468
           E  A     +  A  +++  D+++V G KG
Sbjct: 425 EWVATAPELLARAATLVDAGDIVLVKGSKG 454


>gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5]
          Length = 792

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 27  ERKINEVSSDSRH--IQAGW--IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           + ++  V +DSR    + G   +FVA+ G   D H FI    ++G  A +V         
Sbjct: 20  DSEVRSVVTDSRSLSCELGCRPMFVAMRGANHDSHDFIADMQSRGVRAFLVERGVEASSC 79

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +         + VDN  + L   A+    +    ++ +TG++GK+ +  ++
Sbjct: 80  TGECG----FVQVDNAIEALQRLAAYHRAQFRGTVVGITGSNGKTVIKEWI 126


>gi|161870654|ref|YP_001599827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis 053442]
 gi|189082912|sp|A9M2H5|MURD_NEIM0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|161596207|gb|ABX73867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 053442]
          Length = 445

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 145/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F     +   A     D      MKRA               +      
Sbjct: 200 LLDYAHTKDKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEYEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  ++    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +A   A    +        D  +IR ++        +     EA++ A       D++
Sbjct: 363 DALAGK-AKGVFLI-----GVDALQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|197124217|ref|YP_002136168.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp. K]
 gi|220918997|ref|YP_002494301.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|229486422|sp|B4UES2|MURC_ANASK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763735|sp|B8J8E9|MURC_ANAD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196174066|gb|ACG75039.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter sp. K]
 gi|219956851|gb|ACL67235.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 458

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 134/411 (32%), Gaps = 49/411 (11%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
            +V+SSA    +       R   P++     R   L+      YG      +A+ G+ GK
Sbjct: 70  VVVISSAVKRDNPEVLEARRRKIPVI----PRAEMLAELMRLKYG------VAIAGSHGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S    +   +GL    +     +++F  + +L                     ++ 
Sbjct: 120 TTTTSMAAHLLAHAGLDPTAV-VGGKVNAFGSNAKLGKGD-----------------YMV 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VEA        R   I       TN+  +H+D+ +T  A        F   +P    AI+
Sbjct: 162 VEADESDGSFLR---IPPTIAIVTNIDPEHLDHWKTPDALRR-GFVDFVNRVPFYGLAIL 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D    + ++                       ++     +       +     F   +
Sbjct: 218 CIDHPTVQSILPDVEKRAVTYGESHQADYRAEAIELSGHAVRFD-AFRRDEALGRFEVAM 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NAL    L   +GI   +  E L     V  RF   G  + G  +  DY H  
Sbjct: 277 VGRHNALNALAVIALGDEMGIPPLVTREALRSFQGVQRRFTVRG-EAAGVTVVDDYGHHP 335

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED 424
             ++  L+  R     R++ +F     R    R +M + A     AD+ ++TD     E+
Sbjct: 336 AEVKATLQGAREAFKRRVVCLF--QPHRYTRTRDLMAEFATAFNDADVLLLTDIYAAGEE 393

Query: 425 P------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P        +   I   G         R E  R A E +   D+++  G G
Sbjct: 394 PIPGATAANLADAIRAWGHRDVTLVP-RAELARAARERVRPGDLVLTLGAG 443


>gi|326202446|ref|ZP_08192315.1| UDP-N-acetylmuramate/alanine ligase [Clostridium papyrosolvens DSM
           2782]
 gi|325987564|gb|EGD48391.1| UDP-N-acetylmuramate/alanine ligase [Clostridium papyrosolvens DSM
           2782]
          Length = 467

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 82/273 (30%), Gaps = 9/273 (3%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+DY +  +   +        +           D+     V KR  N
Sbjct: 181 HPFMAVVLNIEVDHVDYFRDLEHIKSTFGEFVALVPRNGYIVACADDENTLSVVSKRDCN 240

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                L               ++            K  D    +PG   V N+L A    
Sbjct: 241 IITYGLKNKDAMWTAKEITYNSMGCASFEVYKEGTKMGDVSLSVPGPHNVSNSLAAIAAA 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G     +   L +      RFE  G      ++  DYAH  + ++  L   ++    
Sbjct: 301 HTCGCSMDNIAYGLSRFGGSHKRFELKG-LVDNIKVIDDYAHHPSEVQATLNAAKSSDHN 359

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEIIH-----G 435
           +I  VF      R +       +   + AD  ++TD     E DP  I ++I+       
Sbjct: 360 KIWCVFQPHTYTRTRAFLDKFSESFGE-ADNIVITDIYAAREKDPGDIHSKILADRIREN 418

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +   +  +      +     D+++  G G
Sbjct: 419 GGNAVYISDFQDIAEYLDKNAQSGDLILTMGAG 451


>gi|110802290|ref|YP_699487.1| cyanophycin synthetase [Clostridium perfringens SM101]
 gi|110682791|gb|ABG86161.1| cyanophycin synthase (L-aspartate-adding) [Clostridium perfringens
           SM101]
          Length = 874

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 140/387 (36%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RKILDNMFKNNYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 278 HLKKVCAIHNKQQVTISV-----------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              K+       +                  +D  F      +  + NA+ A    + I 
Sbjct: 639 ENLKLENPIVFYRDETIYVKNRGKEYKIASAEDMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L+K        R  F   +  G  + +DY H  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKKFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGFKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +GKI+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGKISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|54023730|ref|YP_117972.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
 gi|54015238|dbj|BAD56608.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
          Length = 499

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 94/501 (18%), Positives = 159/501 (31%), Gaps = 71/501 (14%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKI--NE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     E+ + +        + ++        DSR I +G +F+A+ G + DGH +   
Sbjct: 1   MIEMTLREIADVVGGTLHDAPDPEVRVTGTAEFDSRRIGSGDLFLALPGERADGHDYAA- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK--------FLSLFA-------- 106
                      + A       A      P +VV+  R+         L+  A        
Sbjct: 60  ----------AAVAAGAAAVLAARPVGVPAVVVE-PRRCSVPATSMALAHDADGSGAAVL 108

Query: 107 -----------SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
                       RL       ++ VTG+SGK+S    +  +    G      G  +    
Sbjct: 109 AALAALARASVERLSAAGGLTVVGVTGSSGKTSTKDLLAAVLAPLGPVVAPPGSFNNELG 168

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   T    +L              + + A   G      +      G   N+G  
Sbjct: 169 HPWTALRATADTRFL-------------VLEMSARGVGHIAALAEVAPPRIGVVLNVGTA 215

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+    +++A   AK  L E  LP +  AI+ ADD     +  R      RV   G    
Sbjct: 216 HLGEFGSREAIARAKGELVEA-LPADGLAILNADDPNVAAMAARTAARVVRVGLSGDADY 274

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                ++     +   T+       +    + GE QV NAL AA +    G D A V   
Sbjct: 275 RASEVRLDEQA-RATFTLHTPAGSTEIRLGVHGEHQVGNALAAAAVASECGADLATVAAA 333

Query: 336 LEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFG 389
           L     V   R +   T      +   Y    +S+   LK + T+        R   V G
Sbjct: 334 LSGARAVSERRMDVRTTADGVTVVNDSYNANPDSVRAALKALVTMSRAGERPRRSWAVLG 393

Query: 390 CG---GDRDQGKRPIMGKIALDL-ADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
                G+    +   +G++A+ L  D  +V  T    R+     +           +   
Sbjct: 394 EMAELGEESVLEHDGIGRLAVRLDVDRLVVVGTGRPSRAMHQGAVME--GSWGEESVLVP 451

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +   A+      +   DV++V
Sbjct: 452 DIDAAVALLDREVEPGDVVLV 472


>gi|326390379|ref|ZP_08211938.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993656|gb|EGD52089.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus JW 200]
          Length = 876

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 150/451 (33%), Gaps = 45/451 (9%)

Query: 65  AQGAEAIV-VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   +  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKP-------RNVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G +                 +     P      L+  +     
Sbjct: 487 NGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADKNIDA-- 544

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEELLPKES 242
              +E +  G+ +  L       G  TN+  DH+     +     A    L  E + ++ 
Sbjct: 545 -AVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKALVVEAVKEDG 603

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQVT 292
            +++ ADD  +  + +RA                       G  +++K    +    Q+ 
Sbjct: 604 YSVLNADDPMTTYLAQRAKGKIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQII 663

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVG 350
             V+ ++          + V NAL A      + +   ++ + ++  +         F  
Sbjct: 664 PVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFYCDTTHNPGRFNL 723

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I     
Sbjct: 724 FNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQGF 783

Query: 411 DIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           D   V +D + R   P ++   +  G                  EA+R A+      D++
Sbjct: 784 DFIYVKEDLDLRGRKPGEVAKLLEQGAIKGGIDRKKIKTILKETEALRAAMYNAEGGDLI 843

Query: 463 VVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           VV    +E    +           ++I E +
Sbjct: 844 VVF---YEKYQPI----------IEVIEEFI 861


>gi|296284497|ref|ZP_06862495.1| UDP-N-acetylmuramate--L-alanine ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 481

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 127/409 (31%), Gaps = 51/409 (12%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            +  A + +  P++        L            ++ +A+ GT GK++  S +  +   
Sbjct: 82  PEVEAALENRIPVVRRAEMLAELMRL---------KSTIAIAGTHGKTTTTSMIAGLL-D 131

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G     +     I  F  + RL                      + VEA        RL
Sbjct: 132 CGEIDPTVINGGVIEQFGSNARLGDSD-----------------WMVVEADESDGSFLRL 174

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           DG        TN+  +H+D++   +    A    F   +P    AI+  D    + V+ +
Sbjct: 175 DGTI---AVVTNIDPEHLDHYGDFEGVKRA-FVEFIHNVPFYGAAILCVDHPEVQAVIAK 230

Query: 260 AHNAGCRVLSVGYQGKFIHLK-----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
             +          Q     +               +     + +  +   P+PG   V N
Sbjct: 231 VRDRRVITYGFSLQADICAVNVKPEAGGNRFDVMVRQRGQEDRRIENVFLPMPGRHNVQN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEM 371
           AL A  + + +     ++ E   +   V  RF  VGT    G    +  DYAH    +  
Sbjct: 291 ALAAIAVSLEMNCSDEVIREGFARFGGVRRRFTRVGTVPVEGGSATVIDDYAHHPVEIRA 350

Query: 372 ILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMG--KIALDLADIAIVTDDNPRSEDP- 425
           +L   R           V+      R      +MG  +   + AD   V       EDP 
Sbjct: 351 VLSAARESVDAMDTPARVIAVMQPHRFSRLGELMGDFQACFNEADQVYVAPVYAAGEDPV 410

Query: 426 -----EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +   I   G        +R E +R     L   D+++  G G
Sbjct: 411 EGVDAAALVDGIKSLGHRHAQTIADREELVRALAPQLEPGDLVLCLGAG 459


>gi|256751766|ref|ZP_05492639.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749294|gb|EEU62325.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 427

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 132/398 (33%), Gaps = 39/398 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N RK L    +    +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRKLLDYMGN---PQKSLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIY--------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
             +                   +   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 207 ---------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN     +    T   Y +               A I           
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQKGVVVSFY 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++       + +   +  ++ +     V          I    K  D    L GE Q+YN
Sbjct: 200 QQPEAMKVIIEACEVRNAYLTVLEKSNVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYN 259

Query: 315 ALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           A +A      + +     +   ++        PGR E +        + +D AH    + 
Sbjct: 260 AALAVESVEKLRMYGYEVTEKDIKEGLYRAKWPGRLEVMRKKPY---VVIDGAHNPQGMT 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           ++ ++++     ++I+V G   D+D  K   M  I +  AD+ I T   P SE   K  +
Sbjct: 317 VLKESLKLFKYDKLILVIGMLKDKDTQK---MLDIIVPEADMIITTT--PISERAYK-AS 370

Query: 431 EIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E+   I     I   N  +A++ A+++  ++D+++  G
Sbjct: 371 ELAQKIDKENVIPIENIEKAVKYALDIAKEEDMVLFCG 408


>gi|187777289|ref|ZP_02993762.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC
           15579]
 gi|187774217|gb|EDU38019.1| hypothetical protein CLOSPO_00841 [Clostridium sporogenes ATCC
           15579]
          Length = 873

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 9/192 (4%)

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +  + N  +    +              + + N + +    IA+G+D   + E LE   
Sbjct: 652 NIIYLQNLNENKEIINVNKAPITLGGKLTYNIENIMASIAALIALGLDINTIREGLESFT 711

Query: 341 VVPGR-FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
                   F   N  G  + +DY H     +++L++++ I   RII V G  GDR     
Sbjct: 712 NEEQNPGRFNMYNVHGTNVILDYGHNIEGYKVVLESVKKIDHKRIIGVIGVPGDRTNSST 771

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRT 451
             +G I  +  D   V +D + R  +  +I   +  GI              +  EA++ 
Sbjct: 772 LKVGNICGENFDYIYVKEDRDKRGREHGEIAGLLKKGILEMGFKNSKLDIILDEEEALKK 831

Query: 452 AIEMLNKQDVLV 463
           AIE     D+++
Sbjct: 832 AIEFSEPGDLVI 843


>gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           8013]
          Length = 445

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 141/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F           +   D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGKKNGVVFIDDSKGTNVGATAAAITGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++ A       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
 gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
          Length = 820

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 111/350 (31%), Gaps = 36/350 (10%)

Query: 35  SDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSN-- 89
           +DSR +      +F A+   +  G  +IP+   +G    ++    + L +          
Sbjct: 3   TDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSG 62

Query: 90  ---------------TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                             L+V N  K L   A     K    ++ +TG++GK+ V  ++ 
Sbjct: 63  QDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLH 122

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           Q+                 S  + ++++  P  +             +       S  G 
Sbjct: 123 QLLSPDRCIV--------RSPRSYNSQIGVPLSV-----WQLSEEAELGIFEAGISEMGE 169

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  IK   G  TN+G  H +   + Q     K+ LF+     +       ++  S 
Sbjct: 170 MGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFK---DCDVVIYNGDNELISN 226

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V K    A     S     + +++ +V    +   ++      D  F  P   +  + N
Sbjct: 227 CVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFIDDASIEN 286

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L     C+ +   +  + E + +L  +  R E     +    I   Y  
Sbjct: 287 VLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNS 336


>gi|158321131|ref|YP_001513638.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158141330|gb|ABW19642.1| cyanophycin synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 882

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 132/389 (33%), Gaps = 22/389 (5%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R       + L+ ++  + + +   +G +   +  + I +   +++  +G TST   + 
Sbjct: 460 PRNVAKEIVNMLFPENAPHSVPIVSVTGTNGKTTTTRMIAKILKMNNMVVGMTSTGGVYI 519

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +  +          A   L  + +    +E +  G+    L       G  TN+  DH+
Sbjct: 520 DNELIVKGDTTGPRSAEIVLMDKHIDIAVLETARGGIVNKGLGYDLADVGLVTNIDDDHM 579

Query: 218 DYHQTQQAYFNAK-MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
                      A    L  E +  E  AII A+D +++ + +RA                
Sbjct: 580 GIDGINTLEDMADVKSLVLEAIKPEGYAIINAEDTFARRMAERARGNIVYFSQCDTNELI 639

Query: 277 IHLKKVCAIHNKQQVTISV-----------EGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           I  KK        +                E +          E  + N+L A     A+
Sbjct: 640 IEHKKQGKKAIYLKEKKICIFDGNKEIDVIEIEKIPATLGGILEHNIENSLCAVAATFAL 699

Query: 326 GIDSALVLEHLEKLHVV--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           G+D   + E L   H         F        ++ +DY H       +L  +  + + R
Sbjct: 700 GVDIHRIYEGLRDFHTDAVHNMGRFNVFEVANFKVILDYGHNIGGYNRVLNGLNKMKANR 759

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------ 436
           +I V G  GDR       +G+++    D   + +D + R  +  ++   I  G       
Sbjct: 760 LIGVIGVPGDRTDISILKIGELSGKYFDQVYIKEDRDLRGRNVGQVAELIKKGCILGKLS 819

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 + +   A+  A++   + D+++V
Sbjct: 820 EQQITTELDERVALEKAMKNAKEGDIIIV 848


>gi|153006723|ref|YP_001381048.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp.
           Fw109-5]
 gi|166222952|sp|A7HH68|MURC_ANADF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152030296|gb|ABS28064.1| UDP-N-acetylmuramate--alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 458

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 140/424 (33%), Gaps = 50/424 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKF-LSLFASRLYGK 112
           GH    Q + Q  + +V SSA    +       R   PI+     R   L+      YG 
Sbjct: 59  GH--AAQHVEQ-VDVVVTSSAVRKDNPEVVEARRRKIPII----PRAEMLAELMRLKYG- 110

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+ G+ GK++  S    +   +GL    +     +++F  + +L     + +  
Sbjct: 111 -----VAIAGSHGKTTTTSLAAHLLAHAGLDPTAV-VGGKVNTFGSNAKLGRGDYMVVEA 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S                          I       TN+  +H+D+ +T++A       
Sbjct: 165 DESD--------------------GSFLHIPPTIAIVTNIDPEHLDHWKTEEALRK-GFL 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   +P    AI+  D    + ++    +                  +V     +    
Sbjct: 204 DFVNRVPFYGRAILCIDHPTVQSLLPEVESRYVTYGESHQADYRADGIEVSGHAVRFD-A 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +     F   L G     NAL    +   +G+ + +  E L     V  RF   G  
Sbjct: 263 FRRDEPLGRFEVRLVGRHNALNALAVVAIADEMGVPADVTREALASFGGVQRRFTVRG-E 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--A 410
           + G  +  DY H    ++  L   R     R++ +F     R    R ++ + A     A
Sbjct: 322 AGGVTVVDDYGHHPAEVKATLLGAREAFHRRVVCLF--QPHRYTRTRDLLPEFATAFNDA 379

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++TD     E+P      E +   I       +    R E  R A + +   D+++ 
Sbjct: 380 DVLLLTDIYAAGEEPIPGATSEALAEAIRACGHRDVSLVPRPELARAARQRVRPGDIVLT 439

Query: 465 AGKG 468
            G G
Sbjct: 440 LGAG 443


>gi|302554927|ref|ZP_07307269.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472545|gb|EFL35638.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 463

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 83/430 (19%), Positives = 144/430 (33%), Gaps = 47/430 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A  +VVSSA      + +       P++   +    L     
Sbjct: 54  GATVHIGH--AAEHLADDASCVVVSSAIRQDNPELARAAELGIPVVHRSDALAAL----- 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   +AV GT GK++  S +       GL S        + +   +        
Sbjct: 107 -MTGLRP---IAVAGTHGKTTTTSMLAVSLSALGL-SPSYAIGGDLDAPGSNALHGEGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + +    +
Sbjct: 162 FVAEADESDRSFHKYA--------------------PEVAIVLNVELDHHANYASMDEIY 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            +     + + P  +  I    +   +   + A      V     Q   + +  V     
Sbjct: 202 ESFETFVDRVTPGGTLVISADHEGARELTRRVAGRDVRVVTYGESQDAGVRVLSVVPQGL 261

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +VT+ ++G++  F   +PG    +NA+ A    +A+GI +  +   L     V  R +
Sbjct: 262 KSEVTVVLDGEELTFTVSVPGRHYAHNAVAALAAGVALGIPAEELAPALAAYTGVKRRLQ 321

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKI 405
             G  + G ++   YAH    +   L+ +R       I+V        R Q     MG+ 
Sbjct: 322 LKG-EAAGVQVIDSYAHHPTEMTADLEAMRAAAGDSRILVVFQPHLFSRTQELGKEMGQ- 379

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNK 458
           AL LAD ++V D  P  EDP      E I               ++ + + +AI  M   
Sbjct: 380 ALSLADASVVLDIYPAREDPIPGVTSELIIDAARAAGADVTPVHDKAD-VPSAIAGMAKP 438

Query: 459 QDVLVVAGKG 468
            D+++  G G
Sbjct: 439 GDLVLTMGAG 448


>gi|167040832|ref|YP_001663817.1| FolC bifunctional protein [Thermoanaerobacter sp. X514]
 gi|300914867|ref|ZP_07132183.1| FolC bifunctional protein [Thermoanaerobacter sp. X561]
 gi|307723899|ref|YP_003903650.1| FolC bifunctional protein [Thermoanaerobacter sp. X513]
 gi|166855072|gb|ABY93481.1| FolC bifunctional protein [Thermoanaerobacter sp. X514]
 gi|300889802|gb|EFK84948.1| FolC bifunctional protein [Thermoanaerobacter sp. X561]
 gi|307580960|gb|ADN54359.1| FolC bifunctional protein [Thermoanaerobacter sp. X513]
          Length = 429

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 129/397 (32%), Gaps = 37/397 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N RK L    +    +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRKLLDYMGN---PQKSLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIY--------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
             +                   +   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 207 ---------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN     +    T   Y +               A I           
Sbjct: 140 VLEVGLGGRFDATNAIDSSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKQKGVVVSFY 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++       + +   +  ++ +     V          I    K  D    L GE Q+YN
Sbjct: 200 QQPEAMKVIIEACEVRNAYLTVLEKSNVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYN 259

Query: 315 ALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           A +A      + +     +   +         PGR E +        + +D AH    + 
Sbjct: 260 AALAIESVEKLKMYGYEITEKDIREGLYRAKWPGRLEVMRKKPY---VVIDGAHNPQGMT 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR 429
           ++ ++++     ++I+V G   D+D  K   M  I +  A++ I T   + R+    ++ 
Sbjct: 317 VLKESLKLFKYDKLILVIGMLKDKDTQK---MLDIIVPEANMIITTTPISERAYKASELA 373

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I       I   N  EA++ A+++  ++D+++  G
Sbjct: 374 ERIEK--EKVIAIENIEEAVKYALDIAKEEDMVLFCG 408


>gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301]
          Length = 789

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 24  QWRERKINEVSSDSR----HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
              + ++  V +DSR     + +G +FVA+ G   D H F+ Q  A+G  A +V      
Sbjct: 17  SGTDCEVQSVVTDSRSLTCELGSGPVFVAMCGANHDSHAFVAQMYARGVRAFMVERPLEA 76

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                        +VV+N    L   A+    +    ++ +TG++GK+ +  ++
Sbjct: 77  L-------PECGYVVVENAIAALQCLAAYHRAQFRGTVVGITGSNGKTVIKEWI 123


>gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 830

 Score = 76.9 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 114/355 (32%), Gaps = 36/355 (10%)

Query: 30  INEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATI 86
           I+ + +DSR +      +F A+   +  G  +IP+   +G    ++    + L +     
Sbjct: 8   IDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELK 67

Query: 87  RSN-----------------TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
                                  L+V N  K L   A     K    ++ +TG++GK+ V
Sbjct: 68  MEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIV 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ Q+                 S  + ++++  P  +             +       
Sbjct: 128 KEWLHQLLSPDRCIV--------RSPRSYNSQIGVPLSV-----WQLSEEAELGIFEAGI 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S  G        IK   G  TN+G  H +   + Q     K+ LF+     +       +
Sbjct: 175 SEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFK---DCDVVIYNGDN 231

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +  S  V K    A     S     + +++ +V    +   ++      D  F  P   +
Sbjct: 232 ELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFIDD 291

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             + N L     C+ +   +  + E + +L  +  R E     +    I   Y  
Sbjct: 292 ASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNS 346


>gi|51894054|ref|YP_076745.1| UDP-N-acetylmuramate-alanine ligase [Symbiobacterium thermophilum
           IAM 14863]
 gi|59798212|sp|Q67K97|MURC_SYMTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51857743|dbj|BAD41901.1| UDP-N-acetylmuramate-alanine ligase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 482

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 136/416 (32%), Gaps = 46/416 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+    +D      +    L V +  + L+ F +          +AV GT GK
Sbjct: 64  GADVVVYSTQVP-EDNPELAAARARGLRVLHRSELLAEFLN-------GRSIAVAGTHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S V  + +++GL    +     +       +      +      S  S        
Sbjct: 116 TTTSSMVACLLEKAGLDPTIL-LGGDLEVIGGTGKAGRGDWVVAEADESDRSFLRYH--- 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  +H+++ +   A      R F   +     A +
Sbjct: 172 -----------------PRVAVVTNVEPEHLEFWEGSFARIQEGFRQFLRQVQPGGLAAL 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----F 302
            ADD   + + +   N    V  V Y        +   I   ++  +    +D       
Sbjct: 215 CADDPTLRSIGQELRNQPGVVHVVFYGTHPEAEWRAENIRPWEKGIVYDCVRDGRLLGEV 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG     N+L A       G+    + E L        RFE    +  G R+  DY
Sbjct: 275 RLPIPGRHNALNSLGALVAGDYAGLSFRQMQETLLSFGNARRRFEVWA-DVDGIRVVDDY 333

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDD-N 419
           AH    +   L   R     R++ VF     R      +M + A     AD+ ++T   +
Sbjct: 334 AHHPTEIRATLAAAREQAGRRVVAVFQPQ--RYSRTHWLMDEFATAFQDADVLVLTRIYS 391

Query: 420 PRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P  E P      E +   I            ++ E +R  +  +   D ++  G G
Sbjct: 392 PPGERPIPGVSAEALARRIQANTGRPVAVISDQEEILRFLLAEVRPGDTVITMGAG 447


>gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha153]
          Length = 445

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 143/418 (34%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|146342502|ref|YP_001207550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195308|emb|CAL79333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase,
           D-alanyl-D-alanine-adding enzyme) [Bradyrhizobium sp.
           ORS278]
          Length = 458

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-----------KEDGHLFIPQAIAQGAE 69
               + E  I+ V+ DSR ++ G +FVA+ G              DG  F   A   GA 
Sbjct: 17  LAGDYPETAIDFVTQDSRAVKPGSLFVALSGTPSGGFVSSFASSRDGWEFAANAEQAGAV 76

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSS 128
           A++V                 P LVV +T    L   A     +    ++ +TG++GK+S
Sbjct: 77  AMIVPHRIE--------GVTVPQLVVTDTLIDGLWALARAARSRFHGPVIGLTGSAGKTS 128

Query: 129 VASFVQQICQRSGLSSFQIGPTS 151
              F+      S   S       
Sbjct: 129 TKEFIAAYPGASASPSSFNNFWG 151


>gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 468

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 154/465 (33%), Gaps = 33/465 (7%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        +      ++ VS+D+R + AG +FVA+ G + D H  +  A A GA A+V
Sbjct: 14  ELAAATGGRWLGAPPAAVDGVSTDTRTLAAGQLFVALKGERFDAHDHLEAAAAAGAAALV 73

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A++    +    +        +T   L   A     +    ++ VTG++GK++    
Sbjct: 74  VSGAWAAAHPAPPRPALAVA----DTLAALGAIARFHRCRFGIPVIGVTGSNGKTTTREM 129

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  I    G      G  +               P+ L       +      + +  +  
Sbjct: 130 IAAILATRGPVLKTEGNLN----------NEVGVPLTLFGLDDAHA---TAVIEMGMNHP 176

Query: 193 GLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           G +  RL  I +   G  T     H++   T +A  +AK  L+E L       +   D  
Sbjct: 177 G-EIARLAAIAQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGLPAGGIAVVNADDAR 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K  +             G +G  + L+ +       +  + V  ++     P      
Sbjct: 236 MLKRGVASGRRMLTFASGRGRRGDVVVLEVLSQSVEGLRFVLGVGNREVPVHIPGLVGAH 295

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLE 370
                 AA         +   +          GR   +     G ++  D Y     S+ 
Sbjct: 296 NARNAAAAACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASMS 355

Query: 371 MILKNIRTITSGRIIVVFGCGGD-------RDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             L+ +R + +          GD         +  R +  + A   A +A++    PR+ 
Sbjct: 356 AALEVLRDLAAAPGARAVAVLGDMLELGSFEAEAHRALGAEAAT--AGVAVLAAFGPRAR 413

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +             E  +R+  +    E L   DVL+V  KG
Sbjct: 414 ATAEAARAAGLAETFHTEDLDRL--VAFVRERLRPTDVLLV--KG 454


>gi|229826928|ref|ZP_04452997.1| hypothetical protein GCWU000182_02312 [Abiotrophia defectiva ATCC
          49176]
 gi|229788546|gb|EEP24660.1| hypothetical protein GCWU000182_02312 [Abiotrophia defectiva ATCC
          49176]
          Length = 76

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 1  MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
          MK  +L  +   E    + + P + ++ ++  + +D R  + G +FV I G + D H FI
Sbjct: 1  MK--NLTLEHIAEACKGIYVGPEEKKQLEVKSIFTDGRKAEEGGLFVPIKGARVDAHNFI 58

Query: 61 PQAIAQGAEAIVVSSA 76
             + +G  A +    
Sbjct: 59 EDVMEKGVFATLSEKD 74


>gi|168215842|ref|ZP_02641467.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239]
 gi|182381983|gb|EDT79462.1| cyanophycin synthetase [Clostridium perfringens NCTC 8239]
          Length = 874

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 143/387 (36%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 276 ---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                      +  +   + N+ +       ++  F      +  + NA+ A    + I 
Sbjct: 639 ENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis N1568]
          Length = 445

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 141/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F           +   D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++ A       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|168210142|ref|ZP_02635767.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626]
 gi|170711753|gb|EDT23935.1| cyanophycin synthetase [Clostridium perfringens B str. ATCC 3626]
          Length = 874

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 143/387 (36%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 276 ---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                      +  +   + N+ +       ++  F      +  + NA+ A    + I 
Sbjct: 639 ENLKQGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|168205550|ref|ZP_02631555.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987]
 gi|170662912|gb|EDT15595.1| cyanophycin synthetase [Clostridium perfringens E str. JGS1987]
          Length = 874

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 143/387 (36%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 276 ---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                      +  +   + N+ +       ++  F      +  + NA+ A    + I 
Sbjct: 639 ENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSANRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|110801078|ref|YP_696891.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124]
 gi|110675725|gb|ABG84712.1| cyanophycin synthetase [Clostridium perfringens ATCC 13124]
          Length = 874

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 143/387 (36%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 276 ---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                      +  +   + N+ +       ++  F      +  + NA+ A    + I 
Sbjct: 639 ENLKHGNPIVFYRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKQFKSCEEDNRGRFNMFDVNGINVILDYGHNIDGYKVVIDSLKNLGLKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|254419677|ref|ZP_05033401.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
 gi|196185854|gb|EDX80830.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
          Length = 470

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 149/429 (34%), Gaps = 54/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH      +++G  A+V S+A    +          I +V   R+   L+      +   
Sbjct: 63  GHD--AAHVSEGVSAVVYSTAVKADNPEMKAARERRIPLV---RRAEMLAELMRLQFS-- 115

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S V  +   +GL    +     I+++  + ++     I +   
Sbjct: 116 ----IAVGGTHGKTTTTSMVAALLDAAGLDPTVV-NGGIINAYGTNAKVGDGDWIVVEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +K      TN+  +H+D++    A   A    
Sbjct: 171 ESDGSFLR--------------------LKSTVAIVTNIDPEHLDHYGDFDAVRKA-FVD 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F E +P    A +  D    ++++    N       +  Q               +   +
Sbjct: 210 FVENIPFYGFAAVCLDHPEVQKLVASIDNRRLVTYGINPQAMVRADNCQMGPDGARFDVV 269

Query: 294 SVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              G+ +       P+ G   V NAL A  +   + +    + E L     V  RF   G
Sbjct: 270 IQNGETYRIENLHLPMAGWHNVSNALAAIAVARELDVSDEAIREGLAGFGGVKRRFTTTG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL- 409
               G RI  DY H    +  +LK  R +T GR+I V      R    R +M + +    
Sbjct: 330 V-VNGVRIVDDYGHHPVEIVAVLKAARQVTEGRVIAVV--QPHRYTRLRDLMNEFSTAFS 386

Query: 410 -ADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAI-------EMLNKQ 459
            AD  IV D  P  E P +      +  GI  +  +   ++A+  A        E     
Sbjct: 387 DADSVIVADVYPAGEPPIEGVDKHALTDGIRRYGHRH--VQALENAAVLPRLIKEEARPG 444

Query: 460 DVLVVAGKG 468
           DV+V+ G G
Sbjct: 445 DVVVLLGAG 453


>gi|188995058|ref|YP_001929310.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277]
          Length = 823

 Score = 76.9 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 123/359 (34%), Gaps = 26/359 (7%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQG 67
           F EL  +LS   ++   + +I  + +DSR +      +F A+     DGHL+I     +G
Sbjct: 4   FSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLYDKG 63

Query: 68  A-EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
               ++   +  L +           + V +    L   A+         ++ +TG++GK
Sbjct: 64  VRSFVISDPSKDLMEKMPQANW----MRVAHPLDALQRIAALRRSMFDIPVIGITGSNGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  F+ Q+ ++              S  + ++++  P  ++       L         
Sbjct: 120 TIVKEFLYQLLRKDYRIV--------RSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQ 171

Query: 187 VEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +       +  RL+  I    G  TN+G  H +     +     K+RLF       +   
Sbjct: 172 MG------EMERLESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFP---HCHTIVY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               +  +  +            S       +++ ++ +  N+ ++     GKD+  + P
Sbjct: 223 NGDCEEIAAAISFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLP 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                 + + +    L   +  +     +    L  V  R E    +     I   Y++
Sbjct: 283 FTDAASIEDIIHCITLISVLCPEVLSARKRFASLEPVEMRMEVKAGDHGNTIINDVYSN 341


>gi|260886503|ref|ZP_05897766.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|330839653|ref|YP_004414233.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|260863646|gb|EEX78146.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747417|gb|AEC00774.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
          Length = 457

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 132/436 (30%), Gaps = 56/436 (12%)

Query: 49  IVG---NKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF 101
           + G   +   GH           GAEAIVVS+A    +       R         +    
Sbjct: 46  LKGLGAHIHHGHR-----AENVHGAEAIVVSTAIPETNPEIVEAARLGLRRFHRSDINAA 100

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L   A           +AV G  GK++  S +      +G+S   I     +     + +
Sbjct: 101 LLNAA---------KGIAVAGAHGKTTTTSMLGVALDHAGISPTII-IGGEVDVLGGNAK 150

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L     +                     S           ++      TN+  DH+D++ 
Sbjct: 151 LGKGEYL--------------------VSEADESDGSFLKLRPHIAVVTNIEDDHLDHYG 190

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T      A  R F E +     A++  D+   +++ +                      K
Sbjct: 191 TLANIRKA-FREFLENIKPGGHAVLCFDNENVRDIAQTLGRKVISYAI--DHEADYRAGK 247

Query: 282 VCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +         ++  EGKD       LPG   V +AL      ++IG+    +   L   H
Sbjct: 248 IEMHGAGVDFSVLHEGKDLGRVRLNLPGRHNVLDALATVVTGLSIGLTVEQMAAGLALFH 307

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKR 399
               RF+  G   +   +  DYAH    +   L   R     RII  F      R +   
Sbjct: 308 GAKRRFQTKG-RVQDVWVVDDYAHHPTEIATTLLAARQTKPRRIICAFQPHRYSRTKLLA 366

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTA 452
              G  A   AD+ ++TD     E P        I   +        +    R +     
Sbjct: 367 AEFGG-AFREADVLVLTDIYSAGEAPIEGVSGRTILDAVRQTTGQDAVYIPQREDIAAHL 425

Query: 453 IEMLNKQDVLVVAGKG 468
             +    D+++  G G
Sbjct: 426 AAIAQSGDIVLTMGAG 441


>gi|168213683|ref|ZP_02639308.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969]
 gi|170714862|gb|EDT27044.1| cyanophycin synthetase [Clostridium perfringens CPE str. F4969]
          Length = 874

 Score = 76.5 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 143/387 (36%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 276 ---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                      +  +   + N+ +       ++  F      +  + NA+ A    + I 
Sbjct: 639 ENLKHGNPIVFYRDETIYVKNRSKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKQFKSCEEDNRGRFNMFDVNGINVILDYGHNIDGYKVVIDSLKNLGLKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|182626262|ref|ZP_02954019.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721]
 gi|177908441|gb|EDT70979.1| cyanophycin synthetase [Clostridium perfringens D str. JGS1721]
          Length = 874

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 143/387 (36%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RKILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NKYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 276 ---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                      +  +   + N+ +       ++  F      +  + NA+ A    + I 
Sbjct: 639 ENLKLGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|300853418|ref|YP_003778402.1| cyanophycin synthetase [Clostridium ljungdahlii DSM 13528]
 gi|300433533|gb|ADK13300.1| cyanophycin synthetase [Clostridium ljungdahlii DSM 13528]
          Length = 874

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 10/138 (7%)

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
                   PGRF     +  G ++ +DY H     + +++  + +   R++ V G  GDR
Sbjct: 710 FYGDFSFNPGRF--NMYDLNGIKVVLDYGHNIEGYKAVIRGAKNLKYNRLVGVIGVPGDR 767

Query: 395 DQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIP-------GFIEKGNRI 446
                  +G I     D   + +D + R  +   I   +  G+              +  
Sbjct: 768 TDESVEKIGSIVGKNFDYVYIKEDKDRRGREIGAIAKILKVGVTKSGFDMNKVEVILDEK 827

Query: 447 EAIRTAIEMLNKQDVLVV 464
           EA+  AI+   + D++++
Sbjct: 828 EALEKAIDTAKQGDLIII 845


>gi|37542396|gb|AAQ93019.1| MurE [Neorickettsia sp. SF agent]
          Length = 156

 Score = 76.5 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
            G  EF+       +I  D A T + L+ +L +I+       + +V  C  D +      
Sbjct: 7   AGYMEFLECYGEDRKIMTDCAQTPSELQNLLLSIKWHFPYNDVTLVLRCSEDHEGKNTLK 66

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M K+A  + +  I T D       E+ R +++   P  IE  +R +A+  AI      ++
Sbjct: 67  MAKVAAKMVNRIIFTGDGNGGTLTERTRRDLMFCCPKAIEIEDRKKAMEYAINNCKPSEI 126

Query: 462 LVVAG 466
           +V+ G
Sbjct: 127 IVIQG 131


>gi|258516477|ref|YP_003192699.1| FolC bifunctional protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257780182|gb|ACV64076.1| FolC bifunctional protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 429

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 115/388 (29%), Gaps = 41/388 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP------ 165
                 + + GT+GK S  + +  + + +GL           S   +      P      
Sbjct: 36  HTKIKAIHIGGTNGKGSTTAMLSAVLKEAGLRVGMFTSPHLHSYTERYRINGEPVGQERI 95

Query: 166 --SPIYLAKALSYLSSQGVTHVSVEASSHGLD---------------------QHRLDGI 202
                 L   L  +  +G  H +   +   +                          + I
Sbjct: 96  AKMITRLRPHLEDMVREGFEHPTEFEAGTAMAFLYFAEEKVDLLLLEVGLGGAIDSTNVI 155

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             +    TN+  DH+DY         A      +            +    K +      
Sbjct: 156 TPVVSVLTNIAMDHMDYLGNTIQEITAVKTGIIK--SGIPVVTSAKNPEALKIIEAACRE 213

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              ++  VG Q      +   A       T S   +D         +      +VA    
Sbjct: 214 KAAQLTVVGNQVTVEQKEFSTAGQKFSIFTDSNHYEDLTLPLLGRHQITNAAGVVAVIEV 273

Query: 323 IAI--GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +           +         P R E +        + +D AH  + ++ + + +    
Sbjct: 274 LQQLGYTIPKEAVHSGLAKTDWPARLEIMRQKPT---VLIDAAHNLDGVQSLKQALLDYF 330

Query: 381 SGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPG 438
             + + +V G  GD+++ K   +      LA+  ++T  N PR+ D E +  E       
Sbjct: 331 PSKKVTLVLGMLGDKERSK---VVAELTPLAEAVVITKPNSPRAGDWELLADEARRFTDK 387

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                N  EA+  A+ M  ++D++ + G
Sbjct: 388 VTLIENITEAVDAAMSMAGEEDLVCITG 415


>gi|116626350|ref|YP_828506.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|123319314|sp|Q01Q49|MURC_SOLUE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116229512|gb|ABJ88221.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 472

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 135/413 (32%), Gaps = 43/413 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA A+VVSSA   Q+          I V+    + L+      YG      +AV G+ G
Sbjct: 74  AGARALVVSSAVDEQNPEVQEARRISIPVIP-RGELLAELMRLKYG------IAVAGSHG 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I   +GL    +      +    + R+     + +    S  S       
Sbjct: 127 KTTTTSMAATILNYAGLDPTVVVGGRVGTMGGSNARVGHSDFLVVESDESDGSFLK---- 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  I    TN+ R+H+D++    A   A    F   +P     I
Sbjct: 183 ----------------LAPIIAVVTNVDREHLDHYPDLDAIR-AAFLEFVNKVPFYGAVI 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +  DDA  + ++           +            +       +  +     D   F  
Sbjct: 226 VCLDDANVQGLLPEIRRRTITYGTTAQADME--AGDISCGPFASEFRLRYRTADLGRFRL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NA+ A  + + + +    + E LE    V  RF+  G    G  +  DY H
Sbjct: 284 HIPGRHNVLNAMAAIAVAMELEVKPDTIREALETFSGVDRRFQLRGQER-GIAVVDDYGH 342

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               +   L   R     RI V+F     R      +M + A     AD   V D    S
Sbjct: 343 HPTEIRATLDGARQCGFRRIHVLF--QPHRYTRTFHLMDEFARSFHQADSLFVMDIYAAS 400

Query: 423 EDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E P      E +   I   G  G    G     +   +   ++ D+++  G G
Sbjct: 401 EKPIPGVTAESLVERIRQFGHRGVEYVGTLDRGVDALVAAASEGDLVLTLGAG 453


>gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Janthinobacterium sp. Marseille]
 gi|151280630|gb|ABR89040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 147/426 (34%), Gaps = 45/426 (10%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-H 113
           DG  F+  A++ G    ++ +    +   A      P+        F    A+    K +
Sbjct: 66  DGVDFV--AVSPG----LMPARELAEIIPAAAEKEIPVWG--EIELFAQALAALKEDKGY 117

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++A+TGT+GK++V S V  +CQR+GL+    G  S  +       LT          
Sbjct: 118 APKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNISPAALDKLHQVLT---------- 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 Q      +E SS  L  H    ++    +  NL +DH+D+H    AY + K R+
Sbjct: 168 ----DDQLPQVWVLELSSFQL--HTTYSLQADVATVLNLTQDHLDWHGDMAAYADDKARI 221

Query: 234 FEEL----------LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHL 279
           F             L  +  + +     +  +  ++A   G    +         +    
Sbjct: 222 FGSNTIRVLNRDDALVMQMSSPLSKVITFGADEAEQADCFGLVDENGMRWLSVAVEEEEP 281

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K     +  ++ +S           + G+    NAL A  LC AIG+  A +L  L   
Sbjct: 282 QKKRRKKDNVELAVSTNKLMPVDALKIRGQHNAINALSALALCRAIGLPFAQLLHGLRDY 341

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGK 398
           H  P R E V T                +    L  +     G    +V   GGD     
Sbjct: 342 HGEPHRVEHVMTIGGVDYYDDSKGTNVGATVAALNGLGASQDGASNHLVLIAGGDGKGQD 401

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              +       A   I+       +D + IRA +       I      EA + A E+   
Sbjct: 402 FSPLADPVAKYARAVILI-----GKDADNIRAALQATGVDMINCTTLEEATQKAAELAQS 456

Query: 459 QDVLVV 464
            D +++
Sbjct: 457 GDAVLL 462


>gi|38565246|gb|AAR23987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamiaopimelate ligase
           [Neorickettsia sp. SF agent]
          Length = 156

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
            G  EF+       +I  D A T + L+ +L +I+       + +V  C  D +      
Sbjct: 7   AGYMEFLECYGEDRKIMTDCAQTPSELQNLLLSIKWHFPYNDVTLVLRCSEDHEGKNTLK 66

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M K+A  + +  I T D       E+ R E++   P  IE  +R +A+  AI      ++
Sbjct: 67  MAKVAAKMVNRIIFTGDGNGGTLTERTRRELMFCCPKAIEIEDRKKAMEYAINNCKPSEI 126

Query: 462 LVVAG 466
           +V+ G
Sbjct: 127 IVIQG 131


>gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 468

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        +      +  VS+D+R +  G +FVA+ G + D H  +  A A GA A+V
Sbjct: 14  ELAGATRGRWLGAPPSAVAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAAAAGAAALV 73

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A++    +    +        +    L   A     +    ++ VTG++GK++    
Sbjct: 74  VSEAWAAAHPAPPRAALAVA----DPLAALGAIARHHRCRFGIPVIGVTGSNGKTTTREM 129

Query: 133 VQQICQRSGLSSFQIGPTST 152
           +  I    G      G  + 
Sbjct: 130 IAAILATRGPVLKTEGNLNN 149


>gi|260905306|ref|ZP_05913628.1| UDP-N-acetylmuramate/alanine ligase [Brevibacterium linens BL2]
          Length = 466

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 98/270 (36%), Gaps = 15/270 (5%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+DY+ T +    A +     +       I  ADD  S +V ++A   G  V+ 
Sbjct: 186 TNVEADHLDYYGTPEKVREAFVEFCAGIGADGGTVIACADDPGSLDVAQQARAQGTSVIL 245

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            G         +        +  + V G  +        PG     NA  A  +  ++G 
Sbjct: 246 YGTSESADVRLRELQSGLVSEFVLDVPGQAEPLPVALRQPGTHNALNATAAIAVAHSLGA 305

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRII 385
           D A     L        RFE  G  + G R+  DYAH    L  +L   R +    GR+ 
Sbjct: 306 DVAKAASGLGGYGGTRRRFEERGIAA-GVRVIDDYAHHPTELRAVLSAARGVVTDEGRVW 364

Query: 386 VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG 438
            +F      R    R   G+ AL LAD  +V D  P  EDP        I   + H    
Sbjct: 365 AIFQPHLYSRTMEFRTEFGE-ALGLADEVVVLDVFPAREDPVPGVTGALIADRVPH--EN 421

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +  EA+      +   D+++  G G
Sbjct: 422 VTFVESFSEAVPYVAARVRPGDLVLTLGAG 451


>gi|315443918|ref|YP_004076797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium sp. Spyr1]
 gi|315262221|gb|ADT98962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium sp. Spyr1]
          Length = 501

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 1  MKLQDLIYKDFPELINQ-LSIFPMQWRER-KINE-VSSDSRHIQAGWIFVAIVGNKEDGH 57
          M L+ +      E++   L+       +R ++   V  DSR + AG +F+A+ G + DGH
Sbjct: 1  MSLRRI-----AEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGH 55

Query: 58 LFIPQAIAQGAEAIVVSS 75
           F   A+A GA A++ + 
Sbjct: 56 DFAATAVASGAVAVLAAR 73


>gi|121595965|ref|YP_987861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
 gi|120608045|gb|ABM43785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
          Length = 482

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 145/415 (34%), Gaps = 38/415 (9%)

Query: 1   MKLQ---DLIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG 56
           M L    DL+    P + +      P+           +D+R + AG +FVA+ G + D 
Sbjct: 11  MTLHQAFDLLRARIPGVRLVGEGATPLARA-------HTDTRTLAAGDLFVALKGERFDA 63

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H F+ QA          + A +    +    +  P + V +T   L   A+    +    
Sbjct: 64  HQFLSQARR--------AGAAAAIAHAGLADAGLPGIEVPDTLAALGALAAGWRAQRDLP 115

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GK++V   +  + +     +              +       P+ L      
Sbjct: 116 LIAVTGSNGKTTVTQMIAAVLRAWKGDAALAT--------QGNFNNDVGVPLTLL---RL 164

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                   V +  +  G   +  D  +       N  R+H+++  T +A           
Sbjct: 165 RPGHEAAVVELGMNHPGEIANLADIARPTVALVNNAQREHLEFMHTVEAVARENG-SVLS 223

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP +  A+  A DA++    + A    C  L+ G     +            QV I   
Sbjct: 224 ALPADGTAVFPAADAFTPLWRELAGTRHC--LTFGETAGEVRCAAAQWGGGAWQVRIDTP 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              FD    + G   V NAL A    +A G+  A + + L     V GR   +     G 
Sbjct: 282 NGAFDTRLAIAGRHNVTNALAATACALAAGVPLASIAQGLAAFAPVNGRSRALAVRCGGR 341

Query: 357 RIYV---DYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIA 406
            I V    Y    +S+   ++ +  +   R++V+   G  GD+        G  A
Sbjct: 342 SITVVDDSYNANPDSVHAAIEVLAALPGPRLLVLGDMGEVGDQGPQFHAEAGAHA 396


>gi|94309648|ref|YP_582858.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353500|gb|ABF07589.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 856

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 134/372 (36%), Gaps = 30/372 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+GT+GK++    +  I   +GL    +G T T   + Q  R+ T        A + L
Sbjct: 473 VAVSGTNGKTTTVRLITHILASNGLR---MGMTGTDGVYIQGERIDTGDCSGPRSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR------------DHIDYHQTQQA 225
               V     E +  GL +  L   +      TN+G             + +   ++   
Sbjct: 530 LHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYISTVEDLAVLKSVIV 589

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A   +       E  A +      +              L      + + ++    +
Sbjct: 590 QNVAPHGMAVLNAADEMVARMADACPGTVTFFAHDAGLPTMALHRAQGRRVVFVEGDQIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             +    + +   D          FQV NA+ +     A+GID A++   L         
Sbjct: 650 ATEGDTEVRIPLADIPLTRNGSIGFQVENAMSSIAAAWALGIDWAVIRRALATFVNDAAT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRP 400
            PGRF     + +G  +  DY H  ++++ +   + T+ S R +VV    GD RD+  R 
Sbjct: 710 APGRFNV--FDFKGATLIADYGHNPDAIQALCNAVETMPSKRRVVVISGAGDRRDEDIRK 767

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAI 453
              +I   + D  ++  D   R  +  ++ A +  G+ G     +  E      AI TA+
Sbjct: 768 Q-TQILGGVFDEVVLYQDQCQRGREDGEVLALLREGLQGAQRTSHVEEIRGEFVAIDTAL 826

Query: 454 EMLNKQDVLVVA 465
             L   D+ ++ 
Sbjct: 827 SHLQPGDLCLIL 838


>gi|34540830|ref|NP_905309.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis W83]
 gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           gingivalis W83]
          Length = 823

 Score = 76.5 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 124/359 (34%), Gaps = 26/359 (7%)

Query: 11  FPELINQLSIFPMQW-RERKINEVSSDSRHIQA--GWIFVAIVGNKEDGHLFIPQAIAQG 67
           F EL  +LS   ++   + +I  + +DSR +      +F A+     DGHL+I     +G
Sbjct: 4   FSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLYDRG 63

Query: 68  A-EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
               ++   +  L +           + V +    L   A+         ++ +TG++GK
Sbjct: 64  VRSFVISDPSKDLMEKMPQANW----MRVAHPLDALQRIAALRRSMFDIPVIGITGSNGK 119

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + V  F+ Q+ ++              S  + ++++  P  ++       L         
Sbjct: 120 TIVKEFLYQLLRKDYRIV--------RSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQ 171

Query: 187 VEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +       +  RL+  I    G  TN+G  H +     +     K+RLF   L   +   
Sbjct: 172 MG------EMERLESIICPSYGIITNIGGAHQENFPDIKTKLEEKLRLF---LHCHTIVY 222

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               +  +  +            S       +++ ++ +  N+ ++     GKD+  + P
Sbjct: 223 NGDCEEIAAAISFCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLP 282

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                 + + +    L   +  +     +    L  V  R E    +     I   Y++
Sbjct: 283 FTDAASIEDIIHCITLISVLCPEVLSARKRFAGLEPVEMRMEVKAGDHGNTIINDVYSN 341


>gi|313887870|ref|ZP_07821549.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846036|gb|EFR33418.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 425

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 71/162 (43%), Gaps = 5/162 (3%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+ Q YNA +A  +   +  D  L  + +++              SR   I VD +H  
Sbjct: 250 IGDHQAYNAALALMVLEYLRKDYKLGPDKIKEGLKRAENIGRTECLSRDPLIVVDGSHNL 309

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDP 425
           +S+E I K+++  T  ++I+ F    D+D      + +    LAD  ++T+ D+ R  D 
Sbjct: 310 DSIEGIEKSVKKFTYNKLILGFSLLKDKD---HKHILEKIERLADKIVLTEIDSDRFTDI 366

Query: 426 EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + +  E             +R EA+   +E+  + D+++  G
Sbjct: 367 DLLEKEFKKISNKEIFAIKDRKEAVEKTLELAGEGDMILWCG 408


>gi|167464916|ref|ZP_02330005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 420

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 145/428 (33%), Gaps = 29/428 (6%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           + GN  DGH  +             ++A   +        +  ++ VD+  K L   + +
Sbjct: 2   LPGNHIDGHEHVAA------ALSKEAAAAFWKRGYPNPPEDAVLIFVDDPLKALQRLSRQ 55

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+ +TG++GK++    V          +  +G T  +     +       P+
Sbjct: 56  YREQCGAKIIGITGSNGKTTTKDLV----------ASVLGTTYRVHKTQGNLNNHIGLPL 105

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L +         V  + +  S  G  +   +  +      T +G  H+    +++    
Sbjct: 106 TLLQI---GEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEIAR 162

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +   L           +      + +       R +S G +     +  V      
Sbjct: 163 AKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNN-IYPVDIQIGN 221

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +  ++  D +F  PL G   V NAL A      + +    + + L  + +   R E 
Sbjct: 222 DGSSFRLQDSDTEFYIPLLGLHNVMNALAAVTAGRELEVSDEKIAQGLRDVQLSGMRIEK 281

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGK 404
               S    +   Y  +  + + +L  ++ +   R   V        G+ ++     +G 
Sbjct: 282 RKAESGFTVLNDAYNASPAATKAVLSLMKQLKGYRHKYVVLADMLELGELEEQFHREIGG 341

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEM-LNKQDV 461
           IA +LA+   ++           I  E     P        +  +A+  A++  ++ +DV
Sbjct: 342 IAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFED-KQAMANALKEVIHPEDV 400

Query: 462 LVV-AGKG 468
           ++V A +G
Sbjct: 401 VLVKASRG 408


>gi|169344245|ref|ZP_02865227.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495]
 gi|169297704|gb|EDS79804.1| cyanophycin synthetase [Clostridium perfringens C str. JGS1495]
          Length = 874

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 143/387 (36%), Gaps = 27/387 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+ L       Y   P  +++VTGT+GK++    +  +    G +      +        
Sbjct: 464 RRILDNMFKENYSNIP--VISVTGTNGKTTTVRLISYVLNLIGFNVGCTTTSGV---KIG 518

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +  +          A S L +  V    +E++  GL +  L       G  TN+  DH+ 
Sbjct: 519 NRYIHKGDDTGYNSARSVLLNPEVDIAVLESARGGLVRRGLAYDLADVGVITNIREDHLG 578

Query: 219 YH-QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-- 275
                     +    L  E +     ++I ADD +S +V+ R                  
Sbjct: 579 IDGINDMEDLSFVKSLVGEAVKDNGYSVINADDEWSLKVLDRIKKPKILFSMNENNKYLQ 638

Query: 276 ---------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                      +  +   + N+ +       ++  F      +  + NA+ A    + I 
Sbjct: 639 ENLKQGNPIVFYRDETIYVKNRGKEYKIASAEEMKFTMNGKLKHNIENAMAACAALVGIE 698

Query: 327 IDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +D  ++ + L++        R  F   +  G  + +DY H  +  ++++ +++ +    I
Sbjct: 699 VDYCIISKGLKQFKSCEEDNRGRFNMFDVNGVNVILDYGHNIDGYKVVIDSLKNLGLKNI 758

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------- 436
             + G  GDRD      +G+I+ D  D  ++ +D + R +D  ++ + I  G+       
Sbjct: 759 TGIIGVPGDRDLNTMKEVGRISGDFFDSIVIKEDKDLRGKDKGEVASIINEGVLSSNRKD 818

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +  EA+R  +++  K + ++
Sbjct: 819 LNVKIILSEEEALRETLKLAKKGETII 845


>gi|150026097|ref|YP_001296923.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772638|emb|CAL44121.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 443

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 111/352 (31%), Gaps = 36/352 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++    V  + ++ GL+    G                         
Sbjct: 100 NAKTIGITGSNGKTTTTMLVYHLLKQGGLNVGLAGNIGKS-------------------F 140

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              +S        +E SS  LD   +   K      TN+  DH+D +  Q   +      
Sbjct: 141 AWQVSEDTHDFYVLELSSFQLD--GIQKYKPHIAIITNISPDHLDRYDYQYEKYIESKFR 198

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
                 +E   I  ADD      +K        V     +          A +N    T 
Sbjct: 199 ITMNQTEEDYLIYDADDQAINNWLKNNKTKAQLVPFSLTKQFEFGAY--EANNNININTN 256

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +           L G+  V NAL A  +   + I  A + E L     V  R E V    
Sbjct: 257 NDPFVMQTSELSLEGKHNVKNALAATSVAQLLKIRKATIRESLADFQGVEHRLEKVLKIQ 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A     +      + ++TS  I +V G     D      + ++        
Sbjct: 317 NVQYINDSKATN---VNATFYALDSMTSPTIWIVGGVDKGNDYS---ELMELVNKNVKTI 370

Query: 414 I-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I +  DN      +KI     + +   IE     +A+R A +M  K D +++
Sbjct: 371 ICLGVDN------KKIIDAFSNVVDELIEVSTMTDAVRQAYKMAEKGDTVLL 416


>gi|260063714|ref|YP_003196794.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783159|gb|EAR14332.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 464

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 121/361 (33%), Gaps = 35/361 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         ++A+TG++GK++ A     + ++ G+ +   G               
Sbjct: 112 EFASWYCQ---ATLVAITGSNGKTTTAMLTHHLLRQGGMDAALAGNIGDS---------- 158

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                      + ++ +      +E SS  LD   + G +      TN+  DH+D ++ +
Sbjct: 159 ---------FAAMVARESHPCYVLEVSSFQLD--GILGFRPHIAVITNITPDHLDRYEYR 207

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A  +   E        +   DD      +     A   +     +          
Sbjct: 208 MDRYIASKKRIAENQGPSDFLVFDRDDPVLAREINPEAFAANLLPLTLEEDPGAAGWLKG 267

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N Q    +      +    L G   + N + AA +   +GI    + E +      P
Sbjct: 268 NDINIQLEKENTPLTMSNDTLALEGRHNMKNTMAAATVARLLGIRKESIRESVANFQGAP 327

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A     +      + ++T+  + +V G   D+    +P+M 
Sbjct: 328 HRLERVLKIHHVQYINDSKATN---VNATFYALDSMTAPTVWIVGGV--DKGNDYKPLMP 382

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  I  +  DN R      I     + +   +E     EA++ A ++  + D ++
Sbjct: 383 LVREKVKAIICLGADNSR------IVEAFGNAVDLLVETYAMSEAVKVAYKIAERGDNVL 436

Query: 464 V 464
           +
Sbjct: 437 L 437


>gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
 gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
          Length = 447

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 121/361 (33%), Gaps = 40/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL    P+N +A+TGT+GK++  + ++ I + +G      G   T           
Sbjct: 99  ELAYRL--SQPQNYIAITGTNGKTTTVTLIRDILKNAGRQVCLAGNVGT----------- 145

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
              P+        L  +    V +E S+  L    +D       +  NL  DH+DY  + 
Sbjct: 146 ---PLSELVLNEDLLHKSDYDVVLEMSNFQLLD--IDAFHPRVATIINLTPDHLDYMASL 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y                  +   DD   KE +++       V     Q     +K   
Sbjct: 201 EEY-YTSKTRIYMNQDHNDIYLQNKDDVVLKEYLQKYPPQAKIVSFSLEQEADCMIKNDA 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +  Q +    + K         G   + N ++A   CI  GID   + + L     V 
Sbjct: 260 IYYQGQHIINLDDIKIV-------GRHNIQNMMIAICACIHSGIDVQSIHDTLAAFTGVE 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFV             A  ++     +  +++    + +++   G ++    R  M 
Sbjct: 313 HRIEFVREYQGVKYYNDSKATNTD---AAIIALKSFE--KPVILLMGGHEKGLDLR-EMA 366

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                ++ +          E  E+   ++    P         +AI  A E+    DV++
Sbjct: 367 NYQKQISHLICF------GEAGERFAKDMK--CPNTDIVKYMKDAIIKAKELAKSGDVVL 418

Query: 464 V 464
           +
Sbjct: 419 L 419


>gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
 gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
          Length = 877

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 128/370 (34%), Gaps = 29/370 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT+GK++ +  +  IC+++G      G T+T   +  D  +          A   L
Sbjct: 491 LAITGTNGKTTTSRLISHICRQTGKVV---GFTTTDGVYIDDYLVEKGDNTGPYSASMIL 547

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEE 236
               V    +E +  G+ +  L   +   G   N+  DH+           AK   +  E
Sbjct: 548 KDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVVAE 607

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--- 293
           ++  E  A++ ADD  +  + ++                     +   +    +      
Sbjct: 608 VVSAEGYAVLNADDPLTVGMAEKVKGRVAYFSMSPDNPIIHDHIRRGGMAAIYENGYLSI 667

Query: 294 --------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----V 341
                     E  +          F + NAL A       GID  L+ + +         
Sbjct: 668 LEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFKPSVAQ 727

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR              +DYAH     E +   +    SG  + V G  GDR      +
Sbjct: 728 TPGRMNLFDLGHH--HALIDYAHNPAGYEAVGGFVGN-WSGEKVGVVGGPGDRRDDDLIL 784

Query: 402 MGKIALDLADIAIVTDDNP-----RSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIE 454
           +GK++  + D  IV +DN      R E  + I   I             +  EA+  A+ 
Sbjct: 785 LGKLSALMFDRIIVKEDNDTRGRRRGEVADLILRGISQENASLRPEVILDETEALEKALS 844

Query: 455 MLNKQDVLVV 464
            +++  ++V+
Sbjct: 845 TVSEGGLVVI 854


>gi|302335883|ref|YP_003801090.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
 gi|301319723|gb|ADK68210.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
          Length = 471

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 142/415 (34%), Gaps = 52/415 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-----------YGKH 113
            +G   ++ S     +   A      P       R      A              + + 
Sbjct: 60  ERGVRVVLGSEDVRGRFDLAVASPGIPE------RSAFFSAARACSTEVIGEPEFAWRES 113

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P+  +A+TGT+GK++  S V  + + +G  +  +G            RL T   +     
Sbjct: 114 PDRWVAITGTNGKTTTTSLVTAMLRSAGTDAVSVGNIG---------RLCTDELV----- 159

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +       E SS  L   RL  +     +  N+  DH+++H + + Y  A    
Sbjct: 160 ----RRRDGAWFVAELSSFQLATSRL--LHPRCAALLNVTPDHLEWHGSLEGYA-AAKER 212

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             + L  +  A++  +D Y ++ + R    G R L VG + + +  +          V +
Sbjct: 213 IFQNLSGDDLAVVSQEDGYCRDAIGRLEARGVRTLHVGVREEPVSGEAAFVRDGWLTVRL 272

Query: 294 SVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               +    +  LP        N L A+ + + +G     V   LE  H +  R E VG 
Sbjct: 273 DGGERRVAPMANLPLRGEHNAQNMLAASSMALFLGASVEAVRRALEGFHPIEHRIEPVGE 332

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    +    A  ++S+E  L        GR IVV   G D+      +  +   +   
Sbjct: 333 FAGVRFVNDSKATNTDSVEKALTA---FDRGR-IVVLLGGHDKGTDLGSL-ARAVNERCK 387

Query: 412 IAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A+           E+I   +    G    I   +  EA   A+      DV+++
Sbjct: 388 AAVC-----FGAAGERIARAVREAGGPTQVIRAPHLREAFLAAVGAARPGDVVLL 437


>gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 961-5945]
 gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis G2136]
          Length = 445

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 141/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F           +   D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPRNELLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGKKNGVVFIDDSKGTNVGATAAAITGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++ A       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 825

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 133/383 (34%), Gaps = 23/383 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHI--QAGWIFVAIVGNKEDGHLFIPQAIAQG 67
               +   +           I  + +DSR +      +F AI     DG  ++     +G
Sbjct: 4   TIERITALIGARRYGRANASIVFLLTDSRSLCFAEETLFFAIKTMSNDGSKYLSDLYKRG 63

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
               VV+    + +  A +  N+  L V NT   L   A R   +    ++ +TG++GK+
Sbjct: 64  VRNFVVN---EVPENYAVLYPNSNFLKVSNTLDALQRLAERHRDEFAIPVIGITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            V  ++ Q+               T S  + +++   P  ++L       ++  +     
Sbjct: 121 MVKEWIYQLLS--------PSLIVTRSPRSYNSQTGVPLSVWL-----LTNNTQLGVFEA 167

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S  G      D I+   G  T +G  H +   + +   N K++LF      +      
Sbjct: 168 GISEPGEMDSLRDIIQPTIGILTTIGDAHQENFTSLEEKCNEKLKLF---TDSKLLIYNE 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +    + V + +       LS   +   +++ KV   +    +  S +G +  +  P  
Sbjct: 225 DNTLVKRCVEQFSFEGQRFSLSRQNEKSTLYVSKVLKNNADSVIYYSYKGVEGSYKIPFI 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH--T 365
            E  + N++    + + +GID   + E +  L  V  R E          I   Y     
Sbjct: 285 DEASIENSIECLAIGLYLGIDKNAIEERMASLEPVAMRLEVKEGRHDCTLINDSYNSDIN 344

Query: 366 SNSLEMILKNIRTITSGRIIVVF 388
           S  + +   + R     R  ++ 
Sbjct: 345 SLDIALDFMSRRPDAKERQRILI 367


>gi|149173091|ref|ZP_01851722.1| Cyanophycin synthetase [Planctomyces maris DSM 8797]
 gi|148847897|gb|EDL62229.1| Cyanophycin synthetase [Planctomyces maris DSM 8797]
          Length = 885

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 123/376 (32%), Gaps = 28/376 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                I+AVTGT+GK++ +  +    + SG +    G T           +T        
Sbjct: 477 NFDVPIIAVTGTNGKTTTSKLIAHALKYSGKNVGLAGTTG---IEIDGVTITAGDYSGPE 533

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A   L    V H  +E +  G+ +  L       G   N+  DHI     +     A +
Sbjct: 534 GARVVLREPTVDHAVLEVARGGIIRRGLGFEDCHIGILLNVDEDHIGTDGVEDLDDLALV 593

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK----------- 280
           +     + + S   I   D      +K          S+  +   +              
Sbjct: 594 KSTVIEVVRPSGFSILNADDAVVVGLKDRAGGAVIYFSLDSENVTVTQHLTEGGTAVVLE 653

Query: 281 -KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                I +       +   D          F   N L A      +G+    +   +   
Sbjct: 654 GDDVIIRSNGPPVRVLSILDAPITLRGIVTFNTANVLAAVAALHGLGMAVNTIRNGMSTF 713

Query: 340 H----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           H      PGR   +   +    + +DY H   ++  +   +  I++GR IV+    G+R 
Sbjct: 714 HPSATQNPGRMNIIDFVTFK--VILDYGHNVPAINALGTALPKISNGRKIVIAHGTGNRT 771

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPR----SEDPEKIRA-EIIHGIP--GFIEKGNRIEA 448
                  G     + D  I+ D +PR     E PE +++  +  G          + ++A
Sbjct: 772 DDNIREFGAALASVYDHIILADIDPRNRVLGETPELVKSGALETGFSEMEIEIIIDPLKA 831

Query: 449 IRTAIEMLNKQDVLVV 464
           I  A  ++   D+++V
Sbjct: 832 IDRAFSIVQPGDLIMV 847


>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
 gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
          Length = 452

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 127/398 (31%), Gaps = 45/398 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G +  V+S    L +          I VV +   F        Y      ++A+TG +GK
Sbjct: 69  GVDLAVISPGVPLSEPEIQAAIQRGIPVVGDVELFAQ------YRPTSAKLIAITGANGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V + V ++C+ +GL +   G               TP                     
Sbjct: 123 TTVTTLVGEMCKSAGLKTIVAGNIGLPVLDTLSME--TPD-----------------VYV 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+    + +   A +  NL  DH+D + + Q+Y  AK       +   +   +
Sbjct: 164 LELSSFQLET--TNSLLADAATMLNLSEDHMDRYDSMQSYAVAKAH-----IFYHAKLQV 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D     +M RA  A           +  +  K                   D     
Sbjct: 217 LNRDDAWSLMMARAKLAQVTFGLDDVVAEQDYGIKQVNGETWLSCGTHDLMNIRDLKIAG 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                  NAL A  LC  IG+D A +++ L     +P R E+V                 
Sbjct: 277 L--HNASNALAAMALCRGIGLDFAPIIQTLYNFKGLPHRVEWVANIDDVDYYDDSKGTNV 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L  +        +V+   G  + Q   P+  +     A   ++        D  
Sbjct: 335 GATCAALSGLSQ-----KVVLIAGGEGKGQDFSPL-KEAVSTNARAVVLI-----GRDAP 383

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I AE++          +  EA+  A ++    D +++
Sbjct: 384 LIEAELLSTNVPMYHAADLPEAVTIAQKLAQTGDAVLL 421


>gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
 gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
          Length = 468

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 13  ELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           EL        +      +  VS+D+R +  G +FVA+ G + D H  +  A A GA A+V
Sbjct: 14  ELAAATRGRWLGAPPSAVAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAAAAGAAALV 73

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS A++    +    +        +    L   A     +    ++ VTG++GK++    
Sbjct: 74  VSEAWAAAHPAPPRPALAVA----DPLAALGAIARHHRCRFGIPVIGVTGSNGKTTTREM 129

Query: 133 VQQICQRSGLSSFQIGPTST 152
           +  I    G      G  + 
Sbjct: 130 IAAILATRGPVLKTEGNLNN 149


>gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
          Length = 821

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 124/359 (34%), Gaps = 28/359 (7%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
             E+   +     +  +  ++ + +DSR +      +F A+     DGH +I        
Sbjct: 5   IKEIAGIIGADAQKLYDAPVSILLTDSRRLSFPEQSLFFALQTKTNDGHNYIQGLYKLRV 64

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
              VVS+     +           LVV +T K L   A+    +    ++ +TG++GK+ 
Sbjct: 65  RNFVVSTFLPEFESMPEAN----FLVVKDTLKALQKLAAHHRKRFNIPVIGITGSNGKTI 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V  F+ Q+                 S  + +++L  P  +        +S +    +   
Sbjct: 121 VKEFLYQLLHNEFNIV--------RSPRSYNSQLGVPLSV------WQMSDKNTLGIFEA 166

Query: 189 ASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S   +  RL  I     G  TN+G  H +   +       K+      L  +  AIIY
Sbjct: 167 GISQPDEMERLQPIIAPTIGVITNIGEAHQENFISSTQKCLEKLT-----LFNDCEAIIY 221

Query: 248 ADDAYS--KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             D       +     +      S       ++++ +  + ++  +  ++ G D  +  P
Sbjct: 222 DGDDAFIANCIESACLSHKAITWSRTDSEAPLYIESIKKLDSETIIRCTLLGFDRTYTIP 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
              +  + NA+    + + +   S   +E  ++L  V  R +     +    I   Y  
Sbjct: 282 FTDDASIENAIHCMAVMLYLKPTSVNDIEKFKRLEPVAMRLDVKQGINNCLLINDTYNS 340


>gi|227874167|ref|ZP_03992371.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
 gi|227839988|gb|EEJ50414.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
          Length = 466

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 139/424 (32%), Gaps = 46/424 (10%)

Query: 59  FIPQA---IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           F+PQ+   I  G E  V ++A     ++F    R   P++   +    L           
Sbjct: 58  FVPQSRQNIQDGVELCVYTAAISEDNEEFQEVKRRGIPMMTRADL---LGRIMQNY---- 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + V GT GK++  S + +I   +            +      N     S I+LA+A
Sbjct: 111 -ATAINVAGTHGKTTTTSMIGEILMEAAKDPTI--TVGGMMKDIGGNLRVGQSDIFLAEA 167

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y +S      S+                       N+  DH+D+ +      ++  + 
Sbjct: 168 CEYTNSFHSFFPSIAV-------------------ILNVEADHLDFFKDINEIRDS-FKT 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F E LP++   +I  D  + +  ++            G      +               
Sbjct: 208 FIERLPEDGLVVINKDIPHYEYFLEDLGGRKIITFGHGDADYTANFISYDHYARPSFTLF 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       + GE  +YN+L A  +   +GI    + E L +      RF+  G   
Sbjct: 268 EHGEDRGKVTLSVTGEHNIYNSLSAIAVARYLGISFEDIKEALHRFSGTDRRFQRKG-KI 326

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
            G  I  DYAH    +   +   +     ++ +VF       + K  +M   A  L  AD
Sbjct: 327 NGFTIIDDYAHHPQEIAATIAAAQKYPHRKLWIVF-QPHTYSRTK-ALMEDFAGALAQAD 384

Query: 412 IAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+ D     E        + +R  ++          +     +  +E + + D+L+  
Sbjct: 385 EIILADIYAAREKNTVGISSDDLRKLMLSQNTNVYYIPDFPSIEKYILEHVKEGDLLITM 444

Query: 466 GKGH 469
           G G+
Sbjct: 445 GAGN 448


>gi|297583946|ref|YP_003699726.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142403|gb|ADH99160.1| cytoplasmic peptidoglycan synthetase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 451

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 136/433 (31%), Gaps = 44/433 (10%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           + LI     E+   + +  +       + V ++  +I  G +FV + G   DGH  I  A
Sbjct: 7   RKLIQSVSKEMSGDIPLTFVA------HGVQTNPENIVTGDLFVPLKGEMFDGHQLIEAA 60

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +  GA A +       +    T+    P+  V++  + +   A +         +AVTG 
Sbjct: 61  VENGAAASLW---RISEPVPKTLDRTFPLFFVEDPERAVEEMAEQYLFDIDPTRVAVTGD 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
             +    + +  + +++               F   + L+ P    +             
Sbjct: 118 YTRHLTRTVLAGMLKKNYRVYLPEETLGEPLPF-FSSVLSMPDDTDV------------- 163

Query: 184 HVSVEASSHGLDQHRLDG-IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            +  +  S   D  R    + +   +     RD  +      A            +  + 
Sbjct: 164 -ILFDVPSRTDDIVRSASELIIPQLAVLCCHRDQHEADIAGHAVHIEAGMKKTGTVFVDR 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                           +  +    ++  G     +   +     + + +         DF
Sbjct: 223 NRW-------------QDVDWQTDLVEYGEDSDSLFYPEQVREEDGRVLFSIKGIMFLDF 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P   +  + + L A G  I +G+ +  V + + +L +    FE    +  G  + VD+
Sbjct: 270 SLPWLMKDHIMSVLAALGPAIHLGMGAESVAQGVSELTMEDFDFETCH-SKDGTVVLVDH 328

Query: 363 AHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDN 419
                S       +        R +++   G   +  K  I+ ++ A +L D    TD  
Sbjct: 329 GRGLKSGLKYSLGMLKHMHHFDRRVLIVDEGFQSNPLKEKIIHEVFADELRDPI--TDLI 386

Query: 420 PRSEDPEKIRAEI 432
              E    IR+ +
Sbjct: 387 TIGEKAFWIRSAL 399


>gi|254480308|ref|ZP_05093556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
 gi|214039870|gb|EEB80529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
          Length = 455

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 124/404 (30%), Gaps = 48/404 (11%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA--------SRLYGKHPENILAV 120
            A+           SAT    +P + +D      +  A             +    I+ +
Sbjct: 61  VAVYAGEYPDELIASATELIVSPGIAIDEPVVAHAALAGVKVVGDIDLFVREAKAPIIGI 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++ KS+V   V  + +R+ L+    G   T               + L      L   
Sbjct: 121 TGSNAKSTVTELVGDMARRAKLNVGVGGNLGTP-------------ALDLLDDERQL--- 164

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SS  L+  R   + L      NL  DH+D H     Y  AK      +   
Sbjct: 165 ----YVLELSSFQLE--RAGKLGLAVAVVLNLSADHLDRHGNMPRYHQAK----HRIFMG 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            S A+ ++DD  +  +++ +       L       F   +            + +   + 
Sbjct: 215 CSTAVAHSDDPLTVPLLEDSVPVVGWRLGEPALNGFGLRRDQGVECLSHGFELLMPVTEL 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                      V NAL A  L  A G+    +L+ L     +P R E V        +  
Sbjct: 275 AMEGRH----NVANALAALALGHAAGLPLDAMLDSLRHFAGLPHRCERVAVIEAVCFVND 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                  +       +  I     IV+   G  +    R + G +        ++     
Sbjct: 331 SKGTNIGATNA---ALTGIGGEHNIVLIAGGQGKGADFRELRGTV-QKHCKHVVLI---- 382

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ED  KI    +  +          +A+  A +  +  D++++
Sbjct: 383 -GEDAPKI-EAALADVVEVTRVDTMEQAVALAEKQASAGDIVLL 424


>gi|254479394|ref|ZP_05092727.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
 gi|214034663|gb|EEB75404.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
          Length = 857

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 131/370 (35%), Gaps = 28/370 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK++V   V  I +  G +                 +     P      L+  
Sbjct: 459 VSITGTNGKTTVTRMVAHILKTYGYTVGMTTTDGIYIDDKCIYKGDNTGPKSARTCLADK 518

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEE 236
           +        +E +  G+ +  L       G  TN+  DH+                L  E
Sbjct: 519 NIDA---AVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKALVVE 575

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIH 286
            +  +  +++ ADD  +  + K+A                       G  +++K+   + 
Sbjct: 576 AVKDDGYSVLNADDPMTPYLAKKAKGKIIYFSMYDNNLTVKRHIENGGIAVYVKEGVIVI 635

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VV 342
              Q+   V  ++            + N+L A      + +   ++ + ++  +      
Sbjct: 636 ANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFYPDTTHN 695

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGRF     N    R+ VDY H    ++ +++  R + + R+I V G  GDR       +
Sbjct: 696 PGRFNL--FNIGSFRVLVDYGHNVEGIKKVIEAARKLDANRLIGVIGVPGDRMDSSIFKV 753

Query: 403 GKIALDLADIAIVTDD-NPRSE---DPEKIRAE--IIHGI--PGFIEKGNRIEAIRTAIE 454
           G++     D   + +D + R     +  KI  E  I  G+            EA++ A+ 
Sbjct: 754 GEVCGKGFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKETEALKAAMH 813

Query: 455 MLNKQDVLVV 464
                D++VV
Sbjct: 814 SAEAGDLIVV 823


>gi|188997128|ref|YP_001931379.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254766029|sp|B2VA52|MURC_SULSY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188932195|gb|ACD66825.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 454

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 137/413 (33%), Gaps = 53/413 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRS--NTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTS 124
           A+ +V SSA    +           P +     R + L+      YG      +A+ G+ 
Sbjct: 66  ADVVVYSSAVKPDNPEMIKAKQLGIPTI----PRGEMLAELMRFKYG------IAIAGSH 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +  ++G     +     + ++  + +L     +      S  S      
Sbjct: 116 GKTTTTSMVGTVLGKTGFDPTVV-IGGKLEAYGSNAKLGRGEFLVTESDESDGSFLK--- 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +     S  N+  +HI +++  +    A    F   +P    A
Sbjct: 172 -----------------LTPTIVSINNIDLEHIGFYKDLEDIKKA-FVAFANKVPFYGAA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            +  DD   K ++        +               V   + + +  ++  G+      
Sbjct: 214 AVNIDDENVKSILPYIERKVIKFGFSEDADI--RAYDVRLENGRYKFKVNDFGEIH---L 268

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   VYNAL    +C  + +   ++ E LE       RFE   +N     +  DYAH
Sbjct: 269 SVPGIHNVYNALATIAICNELSVPFCVIKESLENFKNAKRRFEIKYSN--DIIVIDDYAH 326

Query: 365 TSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
               L+  L   R      RII VF     R      +  + A      DI IVT+    
Sbjct: 327 HPTELKATLSAARDYFKDRRIIAVF--QPHRYSRLNALFEEFAKAFDIPDITIVTEVYSA 384

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E P      EK+  +I           N  EA      ++ K DV++  G G
Sbjct: 385 GESPIENVSGEKLAEKIREYGNNVYYVSNLEEAENLLKNIIQKGDVILTLGAG 437


>gi|326334992|ref|ZP_08201192.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692797|gb|EGD34736.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 445

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 127/361 (35%), Gaps = 35/361 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR        I+AVTG++GK++  S +  + +++GLS    G               
Sbjct: 93  EFASRYTQ---AKIIAVTGSNGKTTTTSLLYHLLEQAGLSIGVGGNIG------------ 137

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++ +   +  +E SS  LD   +   +       N+  DH+D +  Q
Sbjct: 138 -------NSFARMVAQEPKEYYVLEISSFQLDD--ISSFRPHIALLLNITPDHLDRYNYQ 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        E   +    I  ADD   +E + +  +   + +    +          
Sbjct: 189 FQNYIDAKFRITEFQSQADFLIYDADDPVLQEELAKRKDIKAQCIPFSLEKSNEQGAYCL 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                       + +       + G+  + N + A+     + I +  + + L     VP
Sbjct: 249 DDKLFHITINQNKFEMSIRELTIKGKHNLKNVMGASVAAKLLNIRNENIRKSLMTFQGVP 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFV        I    A   NS+      + ++  G I +V   G D+     P++ 
Sbjct: 309 HRLEFVKEVGEVRYINDSKATNVNSV---YYALDSMPDGLIWIV--GGQDKGNDYNPLIP 363

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            ++  +  I  +  DN      +KI       +P  IE  +  +A++ +  +  + D ++
Sbjct: 364 YVSQKVKAIVCLGLDN------QKIIQTFQSIVPTIIETHSMEDAVQVSRGLSEEGDTVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|83589695|ref|YP_429704.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
 gi|109892711|sp|Q2RK78|MURC_MOOTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83572609|gb|ABC19161.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
          Length = 468

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 133/406 (32%), Gaps = 40/406 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+SSA    +          + VV           +RL+       +AV G  GK++ +
Sbjct: 71  VVISSAVPSSNPEVVAARQRSLPVVKR-----GELLARLFN--ARRGIAVAGAHGKTTTS 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V  + +  GL                      P+ +       + S+          +
Sbjct: 124 ALVALVMKEGGLE---------------------PAAVIGGYVREFASNAYPGRGDFLVA 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +K      TN+  DH++++ +      A  + F + +     AI+ A+D
Sbjct: 163 EADESDGSFLWLKPEIALITNIEADHLEHYGSLDRIV-AAFKDFIDQIRPGGKAILCAED 221

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                ++  +          G         ++  +  +  +    +         +PG  
Sbjct: 222 PRVAGLVACSPRQVITYGLNGRPDYRATGVQMAGMGGRAAIYYREQY-LGQLTMAVPGRH 280

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NAL A      +GI  A++   L +   V  RFE +  +    R+  DYAH    + 
Sbjct: 281 NILNALGAIAAGHQLGIPFAVMARALGQFRGVGRRFEIL-WDDGTTRVVDDYAHHPTEIR 339

Query: 371 MILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP---- 425
             L     + + R++ VF      R        G+ A   AD+ IV D  P  E P    
Sbjct: 340 ATLAAASQVGAKRVVAVFQPHRYTRTHHLYREFGQ-AFRQADVVIVNDIYPAGEAPLPGV 398

Query: 426 --EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + I  EI   G           E +    +     D+++  G G
Sbjct: 399 NSQLITGEIKGSGHQQVYYLPTLEETLAFLKKSCRPGDLVLTLGAG 444


>gi|319778483|ref|YP_004129396.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
 gi|317108507|gb|ADU91253.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
          Length = 472

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 86/442 (19%), Positives = 149/442 (33%), Gaps = 71/442 (16%)

Query: 56  GH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGK 112
           GH   ++      GA+AIVVS+A S  +       +  I VV   R   L+       G 
Sbjct: 56  GHSADYLD-----GADAIVVSTAVSQGNPEVLKARSLHIPVVP--RAIMLAELMRLKSG- 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +AV GT GK++  S V  +    G   +F IG    ++S   + +L T   I + 
Sbjct: 108 -----IAVAGTHGKTTTTSLVASVLATGGLDPTFVIG--GRLNSAGANAKLGTGDYIVVE 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S  S                       +       TN+  DH+D +    A      
Sbjct: 161 ADESDASFLH--------------------LFPTIAIITNIDSDHMDTYGHDVAKLRGAF 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F + LP    AII  DD   + +M     +         +        +     + + 
Sbjct: 201 VEFAQRLPFYGSAIICTDDENVRNIM--PFISCSSTTYGLNEQAHFRAINIENNGTRMEF 258

Query: 292 TISVEGK-----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +  + +            +PG+  V NAL A  +   +G+  + + + L + + V  RF
Sbjct: 259 DVIRKYQGKELPQLHISLNIPGQHNVLNALAAIAVGTEVGVADSDIEKALSEFNGVSRRF 318

Query: 347 EFVGTNSR-------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VG              +  DY H    ++  ++  R     R  +VF     R    R
Sbjct: 319 TQVGDFDVIQNNGGGKFTVIDDYGHHPVEMDATIQAARGAWPTRR-LVFAFQPHRYTRTR 377

Query: 400 ---PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPG---FIEKGNRI 446
                   +    AD  I+++  P  E P        +   +   G        +  +  
Sbjct: 378 DCFEDFVNVLGK-ADAVILSEVYPAGESPIVAADGRALARALRVAGHVEPIFVEDINDMP 436

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           +AI   +++    DV++ +G G
Sbjct: 437 KAI---LKIAKDGDVVICSGAG 455


>gi|324326562|gb|ADY21822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 64

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
            +  + +R  AI  AI M +  D++++AGKGHET  I+ +       D +  R+ +
Sbjct: 7   NYKVEVDRELAINHAINMASSNDIVLIAGKGHETYQILKDST-IHFDDKEKARQAI 61


>gi|153941125|ref|YP_001389483.1| cyanophycin synthetase [Clostridium botulinum F str. Langeland]
 gi|152937021|gb|ABS42519.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F
           str. Langeland]
 gi|295317584|gb|ADF97961.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum F
           str. 230613]
          Length = 873

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  GI              +  EA++ AIE  N  
Sbjct: 780 ENFDYVYIKEDRDKRGRKHGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIEFSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|170755898|ref|YP_001779747.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra]
 gi|169121110|gb|ACA44946.1| cyanophycin synthetase [Clostridium botulinum B1 str. Okra]
          Length = 873

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  GI              +  EA++ AIE  N  
Sbjct: 780 ENFDYVYIKEDRDKRGRKHGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIEFSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M6190]
 gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis ES14902]
          Length = 445

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNA-----DDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   + 
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALV 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|226313426|ref|YP_002773320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
 gi|226096374|dbj|BAH44816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
          Length = 454

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 125/404 (30%), Gaps = 44/404 (10%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              I +G   +V +     +           I VV          AS++       I+ +
Sbjct: 63  DDLIHEGVSLVVKNPGIPYEAAPVKQAQALGIPVVTEV-----ELASQIAKAP---IIGI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++  + V  I + +GL +   G   T+     +                   + 
Sbjct: 115 TGSNGKTTTTTLVGLIFKEAGLDAKVGGNIGTVLCGLAE------------------EAG 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +  E SS  L   R    +   G   NL   H+DYH T + Y  AK+++F      
Sbjct: 157 PDEWLVAELSSFQLMGTR--KFRPHIGVLLNLYPAHLDYHHTMEEYLAAKLKMFANQTAD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ++  + Y      ++      +      S            +    +    T      + 
Sbjct: 215 DAAILPYDQPEIVEKCKDLPASIYYFSKSQEVPKGAFVKDGLILFADGNGNT------EP 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                      + NAL A  +    G D   +++ L     V  R EFV +         
Sbjct: 269 IVAIADITVPHLDNALAAILVAKLAGADKQSIIQVLTTFPGVEHRMEFVDSIRGVKYFND 328

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A    +    L+  +       +V    G DR    R ++  I   +  +  +     
Sbjct: 329 SKATNPEAASRALQACKE-----PVVWICGGLDRGVDFRELLPVIQGRVKAVIAL----- 378

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               P  +      GI   I      +A+  A ++    DV+++
Sbjct: 379 GQTAPILLERAQEAGINERIHVDTVEKAVLAASQLAESGDVVLL 422


>gi|284039008|ref|YP_003388938.1| cyanophycin synthetase [Spirosoma linguale DSM 74]
 gi|283818301|gb|ADB40139.1| cyanophycin synthetase [Spirosoma linguale DSM 74]
          Length = 895

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 93/287 (32%), Gaps = 22/287 (7%)

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           + R      ++ +    A +             +      +S +       A  R   + 
Sbjct: 608 MARVKAIVAESVKPDGYAVLNADNPHTYAMRHLVSSQVALFSMDPASERIVAHYRAGGLA 667

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              +  ++         Q   ++     F+   P   E  +   L A    +   + +  
Sbjct: 668 AVYEDGYITLRRGDQCIQVEHVNNIPLAFEGKAPFMIENIMAAVLAAYCQELPFHLIAEG 727

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +   +      PGR            + VDYAH  + +  + + I+   +   + +    
Sbjct: 728 LRSFVPSFENTPGRMNLFCFR--NYCVLVDYAHNPHGIAALGEYIKQAGAVHKVGILTGV 785

Query: 392 GDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI------PGFIEKGN 444
           GDR       +G++A  L D  I+  D++ R  D ++I + I  GI             +
Sbjct: 786 GDRRDEDIIAVGRVAATLFDEIIIRFDEDSRGRDTDQIASLIRQGIYEIDQNKPTHIIPD 845

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIRE 491
            + A+  AIE +             E+  IV   ++      +I+RE
Sbjct: 846 ELAALTYAIEHVQ------------ESTMIVHLSDRINRS-VEIVRE 879


>gi|150388000|ref|YP_001318049.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|189028968|sp|A6TJM2|MURC_ALKMQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149947862|gb|ABR46390.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus metalliredigens
           QYMF]
          Length = 460

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 80/405 (19%), Positives = 140/405 (34%), Gaps = 39/405 (9%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV +A    D    IR+    + + +  + L     +      E  +AV G+ GK++  S
Sbjct: 74  VVYTAAVKADNPERIRAEELGIPLADRAEMLGQIMKKY-----EKAIAVAGSHGKTTTTS 128

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  + +                S      L       +   +    SQ     + E   
Sbjct: 129 LISLLME---------------YSNLDPTILVGGELDEIGGNIKIGQSQHFITEACEYVE 173

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L  +   GI        N+  DH+DY +  +   +A  + F + +PKE   I   DDA
Sbjct: 174 SFLKFYPFIGI------ILNIDEDHLDYFKDIEHIKSA-FKKFAQRIPKEGFLIASYDDA 226

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + +E+ +                   H  +                    F   +PG   
Sbjct: 227 HVREISRDLDCHVITYGIKTKSQFMAHNIEFSFEGLPSFDVSFEGKTIGSFSLNIPGLHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN+L A      +G+D   + +H+ +   +  RF+ +G   +G ++  DYAH    +  
Sbjct: 287 VYNSLAAIATTYVLGVDPVAISKHITRFKGIHRRFDLLG-EVKGAKVIDDYAHHPVEIRA 345

Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
            L+  +     +I  VF      R Q       K +  LAD  I+TD     E  E I  
Sbjct: 346 TLEAAKKYPHKKIWCVFQPHTYSRTQALLKDFAK-SFYLADHVIITDIYAAREKDEGIVN 404

Query: 431 EIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
               G+   I + +  + I       R   + +   D+++  G G
Sbjct: 405 --SQGLVNLIVQEHPAQYIGGFEEISRYLYDHIEAGDIVLTMGAG 447


>gi|30248992|ref|NP_841062.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
 gi|60390554|sp|Q82VS5|MURD_NITEU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30138609|emb|CAD84900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
          Length = 471

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 135/399 (33%), Gaps = 32/399 (8%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG +AI +S   ++ +          + V+ +    L   A   Y      ILA+TG++G
Sbjct: 66  QGIDAIAISPGVAVAEPLVQAALQQGVPVIGDIE--LFAVALDQYAPPGTKILAITGSNG 123

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V S V ++ + +G      G                P+ +  A      +++     
Sbjct: 124 KTTVTSMVGEMVKNAGWDVEVAGNIG-------------PAALD-ALMQRMDANKWPHLW 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++E SS  L+      ++  A +  NL  DH+D + + + Y  AK R+F          I
Sbjct: 170 ALELSSFQLET--TSSLRPDAATVLNLSEDHLDRYDSIEEYAAAKARIFSRPHNNGCVQI 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DDA    +  +        LS     +   L    +     Q +  +          
Sbjct: 228 LNRDDARVYAMADKNSKQVTFGLSAPVSDEEFGLLPGGSDVWLAQGSTHLLKTS---ELA 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G     NAL A  LC A+ +    +L  L     +P R + V   +         +  
Sbjct: 285 VAGLHNAANALAALALCRAVDLPFEPLLHALRTFRGLPHRMQKVAEFNGVTFYDDSKSTN 344

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             S    L         R  V+   GGD        + +         ++        D 
Sbjct: 345 IGSAVAALNGF------RKNVILIAGGDGKGQDFSPLEQPVSKHVRSVVL-----LGRDA 393

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +K+   I              EA++ +  +    DV+++
Sbjct: 394 DKVAQAIQASNVPIHRVTTMDEAVQVSFLLAEHGDVVLL 432


>gi|307265320|ref|ZP_07546877.1| FolC bifunctional protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919604|gb|EFN49821.1| FolC bifunctional protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 427

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 131/397 (32%), Gaps = 37/397 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R+ L+   +    +    I+ V GT+GK S ++F+  I Q++G              
Sbjct: 23  ENIRRLLNYMGN---PQKNLKIIHVAGTNGKGSTSAFISNILQQAGYKVALYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIY--------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA- 206
             +                   +   +S +  +G  H +       +        K+   
Sbjct: 80  EERMRINGENISKEKLIYYVEYIKPIISRMVEEGYNHPTEFEVVTAIAFKYFYDEKVDFV 139

Query: 207 ---------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN     +    T   Y +               A I   +       
Sbjct: 140 VLEVGLGGRFDATNAIDFSLVSVITTIDYDHTDRLGHTLGEIAYEKAGIIKRNGVVVSFY 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++       + +   +  ++ +     V          I    K  D    L GE Q+YN
Sbjct: 200 QQPEALKVIIEACEVRNAYLTVLEKSNVIIKEQNPDFQIFDYKKYKDLKITLLGEHQIYN 259

Query: 315 ALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           A +A      + +     +   +         PGR E +        + +D AH    + 
Sbjct: 260 AALAIESVEKLKMYGYEITEKDIREGLYRAKWPGRLEVMRKKPY---VVIDGAHNPQGMT 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR 429
           ++ ++++     ++I+V G   D+D  K   M  I +  A++ I T   + R+    ++ 
Sbjct: 317 VLKESLKLFKYDKLILVIGMLKDKDTQK---MLDIIVPEANMIITTTPISERAYKASELA 373

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I       I   N  EA++ A+++  ++D+++  G
Sbjct: 374 ERIEK--EKVIAIENIEEAVKYALDIAKEEDMVLFCG 408


>gi|23009655|ref|ZP_00050624.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 252

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
             P  +   +   +    R I   S D+R ++ G +F AI G   DGH F+  A+ +   
Sbjct: 7   WIPSALEAATGGRLIGEPRAIRGASIDTRSLEPGDLFFAIRGEARDGHDFVQAALDK--- 63

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLFASRLYGKHPENILAVTGTS 124
                +A      +       P+L V           +         +    I+AVTG+ 
Sbjct: 64  --GAGAAVVAASRADDCAGAGPVLAVPEGGEDPVLDAMRRLGLAARARSRAAIVAVTGSV 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           GK+     ++ +    G +   +   +   
Sbjct: 122 GKTGTKEALRHVLSAQGATHASVASYNNHW 151


>gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74]
 gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74]
          Length = 835

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 123/369 (33%), Gaps = 29/369 (7%)

Query: 35  SDSRHIQ---AGWI-----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           +DSR +    A  +     F AI+G   DGH FI     +G    V+  +    +    +
Sbjct: 15  TDSRQVTGHAADSLANEAVFFAILGEHHDGHAFIGDLYRKGIRQFVIERSALTPERREEL 74

Query: 87  R--SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
              ++     VD++ + L   A+    +    ++ +TG++GK+ V  ++ Q+     + +
Sbjct: 75  ATYADAQFTKVDSSLQTLQTLAAEHRRQFRIPVIGITGSNGKTIVKEWLAQLLADEYVIA 134

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                    S  + +++L  P  +          S  +       S     Q     I+ 
Sbjct: 135 --------RSPKSYNSQLGVPLSV-----HQLNESHTMAIFEAGISQTQEMQALEAIIRP 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR--AHN 262
             G FTN+G  H    +T++     K+RLF               D     ++K      
Sbjct: 182 TIGIFTNIGTAHDQGFRTRKQKVAEKLRLFIHAGTLIYCTDYADIDEEVNLLLKAVNPDM 241

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                   G +  +        +    + T   +     F  P   E  ++       + 
Sbjct: 242 RFITWSLTGQKATYQGRIAGNQVSLTGKNTGFDQPLTLPFTDPASVENLMHCL---VTML 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
                 +A +   L +L  V  R E     +    I   Y +    L++ L+ +    + 
Sbjct: 299 SLRTWSAAELQSRLNRLRPVSMRLEQKEGINNCELIDDSYNNDMVGLQLALRFLNQQGTR 358

Query: 383 -RIIVVFGC 390
            R IV+   
Sbjct: 359 SRRIVILSD 367


>gi|260892211|ref|YP_003238308.1| FolC bifunctional protein [Ammonifex degensii KC4]
 gi|260864352|gb|ACX51458.1| FolC bifunctional protein [Ammonifex degensii KC4]
          Length = 426

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V +      + +D AH       + + +      GR ++V G   D+    R 
Sbjct: 291 WPGRLEIVFSQPT---LILDGAHNPAGTAALREALDYYFPRGRRLLVLGMCDDKA---RE 344

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M KI +  A + +VT    PRSED  ++        P         EA+  A+     +
Sbjct: 345 EMVKIIVPGASLVVVTRPPGPRSEDWRRVADWARSLCPQVYLVEEPQEALGQALRQARPE 404

Query: 460 DVLVVAG 466
           D++VV G
Sbjct: 405 DLVVVTG 411


>gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132]
 gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132]
          Length = 802

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 35  SDSRHI-QAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS-NTP 91
           +DSR + +    IF AI G + DGH FIP+   +G    VV      +     +      
Sbjct: 15  TDSRFLSKPDSSIFFAIKGERHDGHQFIPELYDKGIREFVVEKRAFNEKLKGILEKEEVK 74

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            L+VD++   L   A +   K+   ++ +TG++GK+ V  ++ 
Sbjct: 75  ALLVDSSILTLQEMAGKNRQKYDHPVIGITGSNGKTIVKEWLN 117


>gi|153956316|ref|YP_001397081.1| cyanophycin synthetase [Clostridium kluyveri DSM 555]
 gi|219856632|ref|YP_002473754.1| hypothetical protein CKR_3289 [Clostridium kluyveri NBRC 12016]
 gi|146349174|gb|EDK35710.1| CphA [Clostridium kluyveri DSM 555]
 gi|219570356|dbj|BAH08340.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 874

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 10/154 (6%)

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            GL I   +    +      +   PGRF     N  G ++ +DY H     + ++   + 
Sbjct: 694 IGLNINYSVIKEGLKSFYCDVSFNPGRFNIYDLN--GVKVVLDYGHNVEGYKSVINAAKN 751

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI- 436
               R+I + G  GDR+      +G+IA +  D   + +D + R      I + +  GI 
Sbjct: 752 FNYKRLIGIIGVPGDRNDESVEKIGRIAGESFDYIYIKEDKDKRGRKSGTIASILKKGII 811

Query: 437 ------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                        N   A+  AI    + D +++
Sbjct: 812 KTGFSTKKVETILNEKMALEKAINTAKEGDFIII 845


>gi|220930459|ref|YP_002507368.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulolyticum
           H10]
 gi|220000787|gb|ACL77388.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulolyticum
           H10]
          Length = 467

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 81/277 (29%), Gaps = 17/277 (6%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+DY +  +   +        +           D+     V K+  N
Sbjct: 181 HPFMAVVLNIELDHVDYFRDLEHIKSIFGEFLALVPNDGYIVACADDENTLSVVSKKECN 240

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                L               ++            K  +    +PG   V N+L A  + 
Sbjct: 241 IITYGLKNKDAMWTAKGITYNSMGCASFDVYKKGEKVGNVSLSVPGPHNVNNSLAAIAVA 300

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G     +   L +      RFE  G      ++  DYAH  + ++  L   ++    
Sbjct: 301 YTCGCSMENIAYGLSRFGGSHKRFELKG-LVDNIKVIDDYAHHPSEVQATLNAAKSSNHN 359

Query: 383 RIIVVF---GCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE-DPEKI-----RAE 431
           +I  VF        +    R     G+     AD  I+TD     E DP  I        
Sbjct: 360 KIWCVFQPHTYTRTKAFLDRFSKSFGE-----ADNIIITDIYAAREKDPGDIHSSMLADR 414

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I       +   +  +      + +   D+++  G G
Sbjct: 415 IRENGGNAVYISDFQDIAEYLDKKVEPGDLILTMGAG 451


>gi|301165431|emb|CBW25002.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteriovorax marinus SJ]
          Length = 455

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 123/400 (30%), Gaps = 39/400 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV---SSAYSLQDFSATIRSN 89
           +S+DSR      +F+ + G   DG  FI   + +G + IV           +  +    +
Sbjct: 23  LSTDSRTYSGEGLFICLCGENFDGFNFIEPVLEKGCKNIVFRNNDENLERMNALSEKFQD 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN---ILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              + VD+    L   A++   +   +   +  +TG++GK++    +  +   +      
Sbjct: 83  VTFIGVDSPLATLQSLANKRIKQFKNDGGFVFGITGSNGKTTTKEMLASLLSSAYGKEVH 142

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               +  +       LT  S                  V + A+  G      +      
Sbjct: 143 ATKGNLNNHIGVP--LTILSAPT---------CCKYMIVEMGANHVGEISDLCEIAMPEF 191

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  +++G  HI      +  F  K  L++ +L  ++    +  +   K + + + +    
Sbjct: 192 GIISSVGAAHIGLFGGIENIFKEKKSLYDYVLRFKTDRSKFIVNNEDKYLSQISPSEVLI 251

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                             +         V          +  ++ + N   A  L + I 
Sbjct: 252 -----------KFGDSSDVDVTYDEGKIVINNVNIENVNILEKYNLSNLASAYLLAVNIF 300

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRII 385
            D           + +P           G +I++D Y     S+E  L +       + I
Sbjct: 301 PDKKDTFISAASEYRIPSLNRSEWIERNGKQIFLDAYNANPTSMESSLNSFVENMKKKGI 360

Query: 386 ----VVF-----GCGGDRDQGKRPIMGKIALDL-ADIAIV 415
               V+F        GD  + +   + +    L A   I 
Sbjct: 361 PLDDVLFVLGDMNELGDYAKDEHERIARQLDGLGAKNVIF 400


>gi|158522796|ref|YP_001530666.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
 gi|229486488|sp|A8ZXW2|MURC_DESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158511622|gb|ABW68589.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
          Length = 457

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 141/413 (34%), Gaps = 45/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +VVSSA +  +    A   +  P++     R  +   A  L  K+    + + G  
Sbjct: 64  GADVVVVSSAIAADNPEVAAAREAGIPVI----PRAEM--LAEILRLKYS---IVIAGAH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S  S V  +  + G+    +     + S   +  L     I      S  S    + 
Sbjct: 115 GKTSTTSMVASVLGQGGMDPTVV-IGGKLKSIGTNAVLGHGDYIVAEADESDGSFLKFS- 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                    TN+ R+H+D++    A   +    F + +P    A
Sbjct: 173 -------------------PSIAVVTNIDREHLDFYPDLAAISKS-FLEFLDRIPFYGVA 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D+   + ++           +                   +   +  + +      
Sbjct: 213 VVCLDNEPLQALVPLIKKRFITYGTSNQADLQAR-HITPINGKVRFSVVWRQEELGTIDL 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NAL A  + + +G+  A++ E LE +  V  R E  G  + G  +  DY H
Sbjct: 272 GVPGFHNVRNALAAVAVGLELGLAFAVIKEALETMAGVQRRLEKKG-ETGGVIVVDDYGH 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRS 422
               ++  L+ +R     R +VV        + K       + A    D  +V       
Sbjct: 331 HPTEIKATLQGVRQHWEDRRVVVVFQPHRYSRTKALFDDFTR-AFYQCDELVVLPIYAAG 389

Query: 423 EDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E P      E +   I   G  G      R EA+    E+L K D+L+  G G
Sbjct: 390 EHPIDGVDGESVAEGIRAHGHKGVRYVEGRAEAVAYLKEILQKGDILLTLGAG 442


>gi|134300391|ref|YP_001113887.1| FolC bifunctional protein [Desulfotomaculum reducens MI-1]
 gi|134053091|gb|ABO51062.1| FolC bifunctional protein [Desulfotomaculum reducens MI-1]
          Length = 431

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 134/400 (33%), Gaps = 47/400 (11%)

Query: 104 LFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               RL    H  NI+ + GT+GK S  + +  I + +G  +             +    
Sbjct: 27  ELLRRLQNPHHRLNIVHIGGTNGKGSTTAMIANILKTAGYKTGMFTSPHLQDYTERFLIN 86

Query: 163 TTPSPIY--------LAKALSYLSSQGVTHVSVEASSHGLDQ------------------ 196
             P P          +   L  +  +G  H +    S  L                    
Sbjct: 87  GQPIPQETLASLIQYIRPHLDKMVQEGFEHPTEFEVSTALALLYFAREETDFVALEVGLG 146

Query: 197 ---HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                 + +K      TN+  DH+DY  +          +   ++ +  P +  A+    
Sbjct: 147 GAIDSTNVVKPKVSVITNIAMDHMDYLGSTLVD---IANVKAGIIKQGIPVVTAAEGEAL 203

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             + +RA     +++ +G        +K       Q+  I+     +    PL GE Q  
Sbjct: 204 GVIRQRALVNNSKLIQIGK-EVTWKPQKNKFKQGFQEFIINGLQNQYYVRLPLLGEHQQV 262

Query: 314 NALVA-----AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           NA  A                + V+    +    PGR E +          +D AH    
Sbjct: 263 NAASAVAAVELLFTGNGYHLPSAVVIEGLRTVEWPGRLEIIRR---NPTTILDGAHNHAG 319

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPE 426
              + K + +   S +II V G   D+++ K   +      L+   +VT  +NPR+ D  
Sbjct: 320 AIALKKALESCFPSQKIIFVLGMLADKERSK---VVAELAPLSKAVVVTRSNNPRAGDWR 376

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           K+   +   I   I   N  EAI  A+  + + ++L + G
Sbjct: 377 KLADYVRTYIEDVIVVENVAEAINQALGHVKESEILCITG 416


>gi|313619830|gb|EFR91420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
          [Listeria innocua FSL S4-378]
          Length = 79

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 7  IYKDFPELINQL--SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
          + K   E++  L  SI    +R+  I  +  D+R I++G +FV  VGN  DGH F+ QA 
Sbjct: 14 LKKTVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAR 73

Query: 65 AQGAEA 70
            GA A
Sbjct: 74 EMGAVA 79


>gi|257056716|ref|YP_003134548.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
 gi|256586588|gb|ACU97721.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
          Length = 472

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 90/414 (21%), Positives = 137/414 (33%), Gaps = 50/414 (12%)

Query: 69  EAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            A++VS+A    +    A      P+L        L              +  + GT GK
Sbjct: 77  SAVIVSTAIKEDNPELVAARERGIPVLHRAEALAALME---------GHRVACIAGTHGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTH 184
           +S  S +                        Q  RL     I   L ++ +         
Sbjct: 128 TSTTSMLTVA--------------------LQHCRLDPSFAIGGDLNESGANAHHGQGGI 167

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              EA                    TN+  DH+D+H T  AY +A    F   +      
Sbjct: 168 FVAEADESD---GSFLSYSPSVAVITNIEPDHLDHHGTADAY-HAVFHDFVRRIEPGGTL 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFD 301
           I+ ADD  + E+  RA   G RVL  G          +       +   V I + G+   
Sbjct: 224 IVCADDEAASELATRAEADGVRVLRYGRAATGEADARVLDYSPGEDGGTVRIVLRGEQLR 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PGE   +NA+ A    + +G D   ++E L     V  RFEF G      R+Y D
Sbjct: 284 MGVAVPGEHMAFNAVAALLAGLELGADLEGLVEGLAAFGGVRRRFEFKGRAG-DVRVYDD 342

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTDDNP 420
           YAH    +   L+ +R       +VV        + +           LAD  +V D   
Sbjct: 343 YAHHPTEVSAQLRAVRQAAGRGRVVVVFQPHLYSRTRAFAAEFAEALGLADEVVVLDVYG 402

Query: 421 RSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             EDPE       + + I      +    +R  A+    ++    DV+V  G G
Sbjct: 403 AREDPEPGVTGELVASRIKGANAHYEPAFDR--AVSLVADLAKPGDVVVTMGAG 454


>gi|218768812|ref|YP_002343324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis Z2491]
 gi|30316128|sp|Q9JSZ5|MURD_NEIMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121052820|emb|CAM09167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis Z2491]
          Length = 445

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 145/420 (34%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSL 104
           G   DG +F    +  A++ G + + +S   S    D  A  R+   +L   +       
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKRNGGRVLG--DI-----E 99

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
             + +  +  + ++A+TG++GK++V S V  +C + GL +   G        A+  R   
Sbjct: 100 LLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGAPVLEAELQREG- 158

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                          +      +E SS  L+    + ++  A +  N+  DH+D +    
Sbjct: 159 ---------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLL 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y + K ++F     +   A     D      MKRA               +        
Sbjct: 202 DYAHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEYEADFW-------L 249

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                ++    E        PL G     N + A  LC A+G+    +LEH++    +P 
Sbjct: 250 ERETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G  +    I         +    +  ++       + V   G  + Q   P+   
Sbjct: 310 RVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +A   A    +        D  +IR ++        +     EA++ A       D++++
Sbjct: 365 LAGK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|168177452|ref|ZP_02612116.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916]
 gi|182670399|gb|EDT82373.1| cyanophycin synthetase [Clostridium botulinum NCTC 2916]
          Length = 873

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  GI              +  EA++ AIE  N  
Sbjct: 780 ENFDYIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|29828747|ref|NP_823381.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces avermitilis
           MA-4680]
 gi|44888190|sp|Q82L07|MURC_STRAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29605851|dbj|BAC69916.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           avermitilis MA-4680]
          Length = 464

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 156/432 (36%), Gaps = 51/432 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A  +VVSSA      + +       P++   +        A 
Sbjct: 54  GATVHIGH--AAEHLADDATCVVVSSAIRADNPELARAAELGIPVVHRSD------ALAR 105

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   +AV GT GK++  S +          +  +       S+A    L  P  
Sbjct: 106 LMDGLRP---IAVAGTHGKTTTTSML----------AVSLSTLGLAPSYAIGGDLDAPGS 152

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-NLGRDHIDYHQTQQAY 226
             L                    +   +  R         +   N+  DH   + +    
Sbjct: 153 NALHGEGDIFV------------AEADESDRSFHKYAPDVAIVLNVELDHHANYASMDEI 200

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAI 285
             A    F + + +    +I AD   ++E+ +R   +G RV++ G      + +  V A 
Sbjct: 201 -YASFETFVDRITEGGTLVIAADHEGARELTRRVTASGVRVVTYGESADADVCVLSVTAQ 259

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             K +V + ++G +  F   +PG    +NA+ A    +A+GI +A +   L     V  R
Sbjct: 260 GLKSEVEVLLDGTELTFTVSVPGRHYAHNAVAALAAGVALGIPAADLASALAAYTGVKRR 319

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMG 403
            +  G  + G ++   YAH    +   L+ +R       I+V        R Q     MG
Sbjct: 320 LQLKGEEA-GVQVIDSYAHHPTEMTADLEAMRAAAGDARILVVFQPHLFSRTQELGKEMG 378

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-ML 456
           + AL LAD ++V D  P  EDP      E I               ++ E + + I  M 
Sbjct: 379 Q-ALALADASVVLDIYPAREDPIPGITSELIIEAARAAGADVTPVHDKAE-VPSVIAGMA 436

Query: 457 NKQDVLVVAGKG 468
              D+++  G G
Sbjct: 437 RPGDLVLTMGAG 448


>gi|257066544|ref|YP_003152800.1| FolC bifunctional protein [Anaerococcus prevotii DSM 20548]
 gi|256798424|gb|ACV29079.1| FolC bifunctional protein [Anaerococcus prevotii DSM 20548]
          Length = 425

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 74/190 (38%), Gaps = 8/190 (4%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +  +    +  + +          L  +   +    AL+               +     
Sbjct: 226 INIIKTGPDYNEFSFRSYKNIKTRLVGIHQIYNAVTALITLDFLKDEFSICERDIYEGLL 285

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGR E     ++  R+ VD +H   +++ ++ +I +    ++IV F    D+D   
Sbjct: 286 TTRNPGRLEL---INKNPRVLVDGSHNREAIDALIDSISSYKYRKLIVGFSILKDKDYDY 342

Query: 399 RPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              +      +AD  IVT   DNPR+ D +++ + +       IE  + ++A   + E+ 
Sbjct: 343 ---VIDSLAKIADEIIVTKIKDNPRAFDTDELYSLVKDKAKKAIEIVDLVKAYEYSKELA 399

Query: 457 NKQDVLVVAG 466
           ++ D+++  G
Sbjct: 400 HEDDLVLWCG 409


>gi|226947343|ref|YP_002802434.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2
           str. Kyoto]
 gi|226840998|gb|ACO83664.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A2
           str. Kyoto]
          Length = 873

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  GI              +  EA++ AIE  N  
Sbjct: 780 ENFDYIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38]
 gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38]
          Length = 780

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 43  GWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
             +F AI G   D HL+I + I++G    VV            +      ++V+N+ K L
Sbjct: 6   NTLFFAIKGQNHDAHLYIEELISKGVRYFVVE------YIPEHLYEKANFIIVENSLKAL 59

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              A     K     + +TG++GK+ V  ++  
Sbjct: 60  QQTAIGYRKKFDFPFVGITGSNGKTIVKEWLNF 92


>gi|78221634|ref|YP_383381.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
 gi|109892706|sp|Q39YL8|MURC_GEOMG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78192889|gb|ABB30656.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
          Length = 461

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 134/424 (31%), Gaps = 45/424 (10%)

Query: 56  GHLFIPQAIAQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A    A+  +VV+S     D    + +   ++ V    + L+      YG   
Sbjct: 56  GH-----ARENLADVDVVVTSTAVHDDNPEVMEAKRRMIPVIPRAEMLAELMRMKYG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V       G+    +     +++   + +L            
Sbjct: 108 ---IAIAGTHGKTTTTSMVATALTHGGIDPTIV-IGGKLNTLGTNAKLGQG--------- 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          +           +       TN+  DH+D++             F
Sbjct: 155 -----------QFLVAEADESDGSFLKLSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A++  +D    E++ R                     ++        V   
Sbjct: 204 INKIPFYGLAVLCLEDRNIAEILPRVKKRFVTYGLSSQADIRATHIRLEG-GTTSFVAHY 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  +  F +PG   V NAL    + + + +  A + E   K   V  RF+  G    
Sbjct: 263 KGYRMGEVSFAMPGAHNVLNALACIAVAMELDVPFAQIQEGFAKFGGVGRRFQVKG-EVN 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
           G  +  DY H    +   L   ++    R +VV        + K  +  +       AD+
Sbjct: 322 GITVVDDYGHHPAEIRATLAAGKSGWPDRRLVVAFQPHRFSRTK-ELFAEFVTCFYDADV 380

Query: 413 AIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++TD     E P      E++   I   G        +R       ++++   D+++  
Sbjct: 381 LVLTDIYSAGEAPIEGVTAERLAENIRKHGQRDVTYIADREALPDHLLQIVRPGDIVLTL 440

Query: 466 GKGH 469
           G G+
Sbjct: 441 GAGN 444


>gi|322804391|emb|CBZ01941.1| cyanophycin synthase [Clostridium botulinum H04402 065]
          Length = 873

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  GI              +  EA++ AIE  N  
Sbjct: 780 ESFDYVYIKEDRDKRGRKHGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIEFSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|237793438|ref|YP_002860990.1| cyanophycin synthetase [Clostridium botulinum Ba4 str. 657]
 gi|229264115|gb|ACQ55148.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Ba4 str. 657]
          Length = 873

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  GI              +  EA++ AIE  N  
Sbjct: 780 ENFDYIYIKEDRDKRGRKDGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|188584697|ref|YP_001916242.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349384|gb|ACB83654.1| cyanophycin synthetase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 894

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 125/376 (33%), Gaps = 31/376 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +++VTGT+GK++    +  I + +G      G TS+  +F +   + +        A 
Sbjct: 484 APVISVTGTNGKTTTVRAIDHILRSNGKDV---GMTSSDGTFIKGELIDSGDNTGPNSAK 540

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAYFNAKMR 232
           + L    +     E +  GL ++ L          TN+  DH   D  ++       K  
Sbjct: 541 ALLKDPTIDSFVFETARGGLVKNGLGYSNAKVAVVTNIANDHLGQDGIESIDDLIFVKSL 600

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + E +  +    +  +D   S  + K         +         HL    +     Q  
Sbjct: 601 VVEAVEKQGVVVLNASDHYVSDFIRKAKGRIIFYAMESDNHYVKSHLAAGGSALYLDQDN 660

Query: 293 ISVEGKDFDFLFPLPGE--------------FQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           I      F        +                +     A G  IA      ++ +    
Sbjct: 661 IVYATGKFHRKLGEITQLPLTMAGMARHNIENCMAGIAAAIGFGIAPSKAFEVLKQFAPS 720

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGR        +G  + +DY H    +  +L  +  +   ++I V G  GDR+   
Sbjct: 721 YQDTPGRCNLFRC--QGKTVLLDYGHNPEGMNRVLAMVEKMPVEKVISVIGVPGDRNDKL 778

Query: 399 RPIMGKIALDL---ADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI------EA 448
               GK+        +  +V +D + R     +    +   +  F E+          EA
Sbjct: 779 IKETGKVVGKYHELIEKVLVKEDSDLRGRKSGETANLLQTTMTEFSEELAVEQNLQEIEA 838

Query: 449 IRTAIEMLNKQDVLVV 464
           I+TA+    + D++++
Sbjct: 839 IKTALSEAGENDLVLI 854


>gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565]
 gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565]
          Length = 852

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 117/380 (30%), Gaps = 42/380 (11%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGA 68
              +   +    +   E  I+ + +DSR +      +F A+   +  G  +IP+   +G 
Sbjct: 5   IESIAQSIGARRVGEYEVTIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGV 64

Query: 69  E-AIVVSSAYSLQD-----------------------FSATIRSNTPILVVDNTRKFLSL 104
              ++    +   +                        +    S    L+V N  K L  
Sbjct: 65  RNFVISEEEFKQVENGELRIESAMQDDDAQPILNSQLSTLNFPSTLNFLIVPNPLKALQK 124

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     +    ++ +TG++GK+ V  ++ Q+                 S  + ++++  
Sbjct: 125 LAEVHRERFNIPVIGITGSNGKTIVKEWLHQLLSPDRCIV--------RSPRSYNSQIGV 176

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P  +             +       S  G        IK   G  TN+G  H +   + Q
Sbjct: 177 PLSV-----WQLSEEAELGIFEAGISEMGEMGALKRMIKPSIGILTNIGGAHQENFFSLQ 231

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                K+ LF+     +       ++  S  V K    A     S     + +++  V  
Sbjct: 232 EKCMEKLTLFK---DCDVVIYDGDNELISNCVAKSMLTAREIAWSRTDIERPLYISCVTK 288

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             +   +       D  F  P   +  + N L     C+ +   +  + E + +L  +  
Sbjct: 289 KEDHTVIAYRYLNMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAM 348

Query: 345 RFEFVGTNSRGGRIYVDYAH 364
           R E     +    I   Y  
Sbjct: 349 RLEVKEGKNNCLLINDSYNS 368


>gi|160893261|ref|ZP_02074049.1| hypothetical protein CLOL250_00807 [Clostridium sp. L2-50]
 gi|156865344|gb|EDO58775.1| hypothetical protein CLOL250_00807 [Clostridium sp. L2-50]
          Length = 436

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 121/418 (28%), Gaps = 25/418 (5%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           ++ +A  +G       +   L       +   P++ +  T    S+FA    G   E+  
Sbjct: 9   YMKEAGKRG-SVYGTETVKELLLRLGNPQDRVPVVHIAGTNGKGSIFA--FVGHILEDAG 65

Query: 119 AVTG-----TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            V G     T         +     +    +  +     +    ++  L  P+   L  A
Sbjct: 66  YVAGRYISPTIFTYLERFQINGHYMKESEFARIMETVIPVCEDMEEAGLPIPTAFELETA 125

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +++L         V   +    ++    +                             + 
Sbjct: 126 VAFLYFVQKKVDIVLLETGMGGKNDATNVVKQPLCTVLASISRDHMQFLGDTLQEILEQK 185

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              L  +         D   +  +K+        +        +  + +           
Sbjct: 186 MGILREQVPCVAYPMQDEMRQIWLKKCDKMQIEPIMADTDQLQVIAEDL------HGSRF 239

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTN 352
             +G++++   P   +       +    CI    D   V            GRF+ +   
Sbjct: 240 CYKGQEYELGIPGIYQIYNSITAIEVCNCIKKQFDLKNVSIKNGLKKTLWEGRFQKIKDV 299

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 Y+D AH       + +NIR   +GR  I + G   D++  K   M  I    A 
Sbjct: 300 PL---TYIDGAHNEGGWRSLRENIRAYFTGRPLIYICGVLADKEYEK---MVDIMAPFAS 353

Query: 412 IAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK--QDVLVVAG 466
             I VT DNPR+ D E +               +   A R A  +  +  + V+VV G
Sbjct: 354 FIITVTPDNPRALDKEILAECYRSYGKPVDTAEDVFAAQRQAETLAQELTEPVIVVFG 411


>gi|149926397|ref|ZP_01914658.1| cyanophycin synthetase [Limnobacter sp. MED105]
 gi|149824760|gb|EDM83974.1| cyanophycin synthetase [Limnobacter sp. MED105]
          Length = 870

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 116/392 (29%), Gaps = 26/392 (6%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +    +     +        ++AVTGT+GK++    ++QI +   L     G T T    
Sbjct: 458 DVGAAVIDLMFKKDENGRIPVVAVTGTNGKTTTVRLIEQILRYHNLRV---GFTGTEGVV 514

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
              + + T        A   L         +E +  G+ +  L       G  TN+G   
Sbjct: 515 VNGHLIDTGDCSGPKSAHKVLVHPEADAAVLECARGGMLREGLGFDMCDVGIVTNIGEGD 574

Query: 217 IDYHQ------------TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                            +      A   L          A +               +  
Sbjct: 575 HLGLNFIDSVEDLALLKSVLVQNVAPNGLAVLNADDRHAANMAKLTPGRVLFFTSNPDNP 634

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                       I         +   +  +++  D          FQV N + A    + 
Sbjct: 635 IVAAHKAKGRPVIIHDGRVINISYDDMEKTIDLMDVPLTNNGLFTFQVQNVMCAVAAALG 694

Query: 325 IGIDSALVLEHLEKLHVVPGRF--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +    +   L      P      F     +GG +  DY H  +++  ++  ++ I + 
Sbjct: 695 LNVPFNTIRAALGSFQSTPDTVPGRFNFFKHKGGSVIADYGHNPDAVSTLVNTLKNIPAV 754

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-----NPRSEDPEKIRAEII---- 433
           R  VV    GDR        G++     D  I+ +D      P  E    ++  I     
Sbjct: 755 RRTVVISAAGDRRDQDITEQGRLVGGFFDHIILYEDACQRGRPDGETLALLQQGIALASG 814

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              P  +E     +AI+ A++      +++V 
Sbjct: 815 DKKPSVVEVRGEFKAIQMALDETGPDHLVLVL 846


>gi|85858527|ref|YP_460729.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
 gi|109892747|sp|Q2LR47|MURC_SYNAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85721618|gb|ABC76561.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
          Length = 480

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 138/412 (33%), Gaps = 50/412 (12%)

Query: 70  AIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V S+A    +         + P++     R  +   A  L  K     +AV+G+ GK+
Sbjct: 84  VVVTSTAVRKDNPEVLEAHRRSVPVI----PRAEM--LAELLKMKVS---IAVSGSHGKT 134

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +  +    G   +  IG    + S   + R+     I      S  S        
Sbjct: 135 TTTSMIATVMASGGLDPTMVIG--GKLGSIGSNARMGHGEFIVAEADESDGSFLK----- 187

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+ R+H+D+++  +   +A    F  ++P    A++
Sbjct: 188 ---------------LSPSLAVITNIDREHLDFYRGIEDIKDA-FLQFANIVPFYGSAVL 231

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
             DD + K ++                      +++       +  +    +        
Sbjct: 232 CLDDPHIKTILSDIKRKTITYGM--EPAADYRAQELRFNGAVTEYELYYRTECLGSVTLS 289

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG F VYN+L    +   + +    + + L+    V  R E  G    G  +  DY H 
Sbjct: 290 VPGMFNVYNSLATVAVARELDMTFPDIQQGLKSYVGVGRRLEVKG-KIAGVTVVDDYGHH 348

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +   L   R +   R+IVVF            R  +G      AD+ IVTD  P SE
Sbjct: 349 PTEISATLAAARQVWKNRMIVVFQPHRYTRTQALFREFLGAFTE--ADLLIVTDIYPASE 406

Query: 424 DPEK--IRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DP +      +  GI            N  +     + ++   D ++  G G
Sbjct: 407 DPIEGVTAEALCDGIRSLTRREVRYIPNFSDITDYLMTVVQPGDTVITQGAG 458


>gi|2959999|emb|CAA76495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter jejuni]
          Length = 350

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 148/392 (37%), Gaps = 55/392 (14%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
                 N+L  F  + ++ + + ++ ++   +    F  +   +     F  QA+  GA+
Sbjct: 11  VLSNSKNKLMGFISEIKKLENSFITDNTLECEKECFF--LQTTQN--AKFHAQALEGGAK 66

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I V+    L +    I                              I+ +TGT+GK++ 
Sbjct: 67  IIDVNECKKLLEIDEKI-----------------------------QIIGITGTNGKTTT 97

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSF--AQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           A+ +  I    G      G      +     +  LTT   +   + L   + +      +
Sbjct: 98  AAAIYSILLDLGYKCGLCGTRGAFINDEQIDEKSLTTSPILKTLEYLLIATPKKCDFFIM 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             SSH L  +R +G+   A  FTN+ +DH+D+  T   Y  AK   F +           
Sbjct: 158 GVSSHALVPNRSEGLNFAAKIFTNITQDHLDFRGTFGNYKEAKELFFTDESL-------- 209

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               +  +             + G +   ++  K  ++       ++ + + F    PL 
Sbjct: 210 ---KFINKDALAIKFNVRNAFTYGIENPALYQIKAYSLEEGISTIVTNKNQTFHIDSPLL 266

Query: 308 GEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           G F +YN LVA+      +  D   + + +     V GR E V        + VD+AHT 
Sbjct: 267 GLFNLYNLLVASACVNELVKPDLKDLEKAISGFGGVCGRVEQVAKG-----VIVDFAHTP 321

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           + +E +L  ++     ++IVVFG GGDRD+ K
Sbjct: 322 DGIEKVLDTLKN---KKLIVVFGAGGDRDKTK 350


>gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
 gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
          Length = 460

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 153/479 (31%), Gaps = 51/479 (10%)

Query: 6   LIYKDFPEL-INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           L  +   E+  + + +      ++ +  V +DSR + AG  FV +VG + DGH F     
Sbjct: 2   LTLRQLIEIWGDPVGLQHPDLLDQPLGPVCTDSRQLVAGAFFVPLVGERFDGHRF----- 56

Query: 65  AQGAEAIVVSSAYSLQ-------DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
                  +V +A            +S  +        V++T +   + A     + P  +
Sbjct: 57  -------LVEAAARPAQAAVVATAWSDPVPPGLLHWRVNDTLEAYQMLARAHRRQLPCPV 109

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GK++    ++      G+     G  +             P            
Sbjct: 110 VAVTGSAGKTTTRELIRAALAPLGVVQASSGNNNNDVGVPLTVLGVGPE----------- 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
              G   + +     G         +      TN+G  HI    +++A   A        
Sbjct: 159 --HGAAVIEMGMRGPGEIARLSRCAEPQIAVITNIGTAHIGRLGSREAIA-AAKCEITAS 215

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQQVTISV 295
           L  +   +I A D   +  + +      R +++          +  V  +         +
Sbjct: 216 LAADGLVVIPAGDPLLEAALAQCWAGRVRRVALEGDALESVRPEAPVDRLGVVDVCAGVL 275

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSR 354
             +      PL G     N L+A  +   +G+  A + +    +      R E  G    
Sbjct: 276 RLEGLAIRLPLEGRHNARNLLLALTVAQELGVPLAQLQDLKVAVPGGRNRRIELAGIQVL 335

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA- 410
                  Y  +  ++   L+ +    +GR   V G     GD+       + + A+    
Sbjct: 336 DET----YNASPEAVFAALE-LLAHQAGRRFAVLGAMLELGDQSVALHRQVAERAVACGL 390

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           D  ++      +       AE    +P         +A+      L   D L++ A +G
Sbjct: 391 DGLVLVM----AGAEADAMAEAAAPLPRLQRVDTPEQAVPVLAAWLQSGDTLLLKASRG 445


>gi|222053882|ref|YP_002536244.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
 gi|254766004|sp|B9M173|MURC_GEOSF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221563171|gb|ACM19143.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
          Length = 458

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 135/412 (32%), Gaps = 44/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA    D    I +   ++ V    + L+      YG      +A+ GT GK+
Sbjct: 65  ADVVVISSAV-HDDNPEVIEARERLIPVIPRAEMLAELMRMKYG------IAIAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I    G+    +     ++S   + RL                         
Sbjct: 118 TTTSMVATILATGGIDPTIV-IGGRLNSIGTNARLGQG--------------------KF 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +           +       TN+  DH+D++   +         F E + K     + 
Sbjct: 157 LVAEADESDGSFLKLSPTIAVVTNIDADHLDFYSGIE----EIKDTFVEFINKIPFYGLA 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVE-GKDFDFLFP 305
                +  V         R  + G   +      ++             +  K  +  F 
Sbjct: 213 VLCLDNGNVADIIPLVKKRFTTYGLTAQADFRATEIRHEGFTTSFVAHYKGQKLGEISFN 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL    +   + +    +    +    V  RF+  G    G  +  DY H 
Sbjct: 273 MPGAHNVLNALATIAVATELDMRFEDIQAGFKSFGGVGRRFQVKG-EVNGIMVVDDYGHH 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              ++  L   +     R++VVF      R +       K A   ADI I+TD  P  E 
Sbjct: 332 PTEIKATLAAAKGGWDRRLVVVFQPHRYTRTKELFEEFVK-AFYDADILILTDIYPAGEQ 390

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P      E + A I  HG        +R +     + ++ + D+++  G G+
Sbjct: 391 PIEGVTAEALSARIKRHGQREVTFVADRNKVCDHLLSIVKEGDIVLTLGAGN 442


>gi|42524578|ref|NP_969958.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus
           HD100]
 gi|48428296|sp|P61676|MURC_BDEBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39576787|emb|CAE80951.1| UDP-N-acetylmuramate--alanine ligase [Bdellovibrio bacteriovorus
           HD100]
          Length = 453

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 141/411 (34%), Gaps = 45/411 (10%)

Query: 68  AEAIVVSSA--YSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTS 124
           A+ +V SSA  Y   + S       P++     R + L+           +  +AV GT 
Sbjct: 65  ADVVVYSSAIQYGNPEISEARARQIPLI----PRAEALAEIMRL------KRGIAVAGTH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S    I   + LS   +              L +                    
Sbjct: 115 GKTTTTSMTSAIFLEANLSPTIV-IGGRFELIKSTAMLGSGE------------------ 155

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                +           +       TN+  DH+++ +T +    +    F   +P     
Sbjct: 156 --WLVAEADESDGSFHKLSPEIAIITNIDSDHLEHFKTFENVQKS-FHDFALKVPFYGKV 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  DD   +++ +                  +  +      ++    +  +    +F  
Sbjct: 213 IVCGDDPLVRQIFENFPKRILFYGFDEKNDLVVTGEHGHYAVHRNDRLLGTKHLVGEFDL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG     NA+ A    +A GI  A   + L++   V  RF F G   +G ++Y DY H
Sbjct: 273 KVPGRHNALNAVAAICAGVAAGIPFATCAKGLQRYEGVDRRFHFKG-EKKGIKVYDDYGH 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDNPRSE 423
               +  +L+  R     + +VVF       + +        A   AD  ++TD  P  E
Sbjct: 332 HPTEVRAVLQAFREKYPKQRLVVFFQPHRYSRTQHCWHDFTTAFMEADQVLLTDIYPAGE 391

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P      EK+ +E+ H    +  + +  +A +  + ML + DV V  G G
Sbjct: 392 APIPGVTSEKLASEMKHEHAQYFVRDD--KATQKILGMLKEGDVFVTLGAG 440


>gi|85707764|ref|ZP_01038830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
 gi|85689298|gb|EAQ29301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
          Length = 460

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 135/398 (33%), Gaps = 56/398 (14%)

Query: 71  IVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           +VVS    L     A   +   + V+ +      LFA       P  ++ +TGT+GKS+ 
Sbjct: 68  VVVSPGVPLNTHPIAGHAAQFSVPVIGDIE----LFARARADLLPHKVVGITGTNGKSTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V  I Q +G+ S   G                  PI   + L+        +  +E 
Sbjct: 124 VALVHHILQMAGIPSLLGGNIG--------------EPIMAQEPLAPGEGGEGVY-VLEL 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ +D      +     + TN+  DH+D +    AY  AK RLF+   P+        +
Sbjct: 169 SSYQIDL--TTSLDCEVAALTNITPDHLDRYDGFAAYAAAKERLFKMQSPRNLAVFGSLE 226

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +                         +    +       Q   +            L G 
Sbjct: 227 EPVG--------------------AIYRRQIEFRGEGRAQAADLDALRDRQANWPSLQGP 266

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N  VA  +   +G+  A     + +   +P R E V        I    A  +++ 
Sbjct: 267 HNLENVAVAVAIVEELGVTEAQWSHAIPRFRGLPHRMEIVCEEEGVLFINDSKATNTDAS 326

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI---VTDDNPRSEDPE 426
              L       + R  + +  GG     K   +GK A  L DIA+   V +  PR     
Sbjct: 327 APALAAYPRGEADRPRIHWIVGG---LAKEDGLGKCAEHLGDIAVAYTVGEAGPRF---- 379

Query: 427 KIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              AE++ G +P         EA+R A +     DV++
Sbjct: 380 ---AELLEGEVPKVERCELVSEAVRRAKDAAVAGDVVL 414


>gi|299144491|ref|ZP_07037570.1| tetrahydrofolate synthase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517579|gb|EFI41319.1| tetrahydrofolate synthase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 435

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              + +  K     GR E V   +    I +D AH  + ++ + +N R     ++ ++  
Sbjct: 285 DESIRNGLKNTFWAGRMERV---NDSPMIILDGAHNFDGIQRLTENFRLFNYNKLYIITS 341

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
              D++  K   M       AD  ++   +  R  + + +R E            N   A
Sbjct: 342 ILNDKEHDK---MLLEFSKYADEIVLVSLETKRKTELDILREEAQKYCENVKVIDNLKLA 398

Query: 449 IRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVD-CDIIREIL 493
           I+  I +  + D++V+AG               +  D   II+EIL
Sbjct: 399 IKDVINVSKRNDLIVIAG------------SLYLVSDTRKIIKEIL 432


>gi|299143662|ref|ZP_07036742.1| folylpolyglutamate synthase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518147|gb|EFI41886.1| folylpolyglutamate synthase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 421

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 4/193 (2%)

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               L  V  I +  +       +  +    L G+ QVYNA +A      +     +  +
Sbjct: 219 HTFSLDDVKDIFSTDKYNEFSFREHKNMRTSLLGKHQVYNASLAIMTLDYLKNFFPISDD 278

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           +L K          +          +D +H + S++ +++N++T +  R+I+ F   GD+
Sbjct: 279 NLRKSISSAKNIGRIEVIKENPTFVLDGSHNAESIDALIENLKTFSYNRLILGFSVLGDK 338

Query: 395 DQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D      + K  + LA   ++T  DNPR+ + E ++ E+           +R  A    +
Sbjct: 339 DIDY---ILKNLIPLASSVVLTTIDNPRAAELEFLKREVSKYSNEVYAFEDRKIAFDKTV 395

Query: 454 EMLNKQDVLVVAG 466
            + N+ D+++  G
Sbjct: 396 SLANEDDMILWCG 408


>gi|227543900|ref|ZP_03973949.1| possible tetrahydrofolate synthase [Lactobacillus reuteri CF48-3A]
 gi|300909647|ref|ZP_07127108.1| tetrahydrofolate synthase [Lactobacillus reuteri SD2112]
 gi|227186121|gb|EEI66192.1| possible tetrahydrofolate synthase [Lactobacillus reuteri CF48-3A]
 gi|300893512|gb|EFK86871.1| tetrahydrofolate synthase [Lactobacillus reuteri SD2112]
          Length = 419

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 118/393 (30%), Gaps = 30/393 (7%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI------ 147
            V   R+ L+             I+ + GT+GK S  + ++Q  Q +G            
Sbjct: 22  RVKFLRRILTRL---KNPDQRFKIIHIAGTNGKGSTGTMLEQGLQNAGYRVGYFSSPALV 78

Query: 148 ----------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                        S         ++T   PI L+     +       +    +   +D  
Sbjct: 79  DDREQIKVNDHLISKKDFAMTYQKITERLPIDLSPDDITIFEWWTLIMLQYFADQKVDWA 138

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            ++         TN+         T  A+ + ++         ++ A I  +      + 
Sbjct: 139 VIECGLGGQDDATNIINAPFISVITHVAFDHTRILGPTITQIAQAKAGIIKNGTKQVFLA 198

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                    ++      + + L +  A        I         +            L 
Sbjct: 199 PHQEKDTLTIIKAKAHQQRVGLTQADAQSIVDGKAILKVNHKIYKVPFNLLGTFQSENLG 258

Query: 318 AAGLCI--AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                             + L            +   +    I +D AH  ++ + + + 
Sbjct: 259 TVVSVFNFLFQRRLVTSWQPLLSTLATVKIAGRMQKIADHPSIILDGAHNPDAAKQLTET 318

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNP-RSEDPEKIRAEII 433
           I      ++I+V G   D++      M KI   +AD  I+T  D+P R+ D     +E+ 
Sbjct: 319 ISKFPRNKVIMVLGFLADKNIS---QMVKIYQQMADKIIITTPDHPTRALD----VSELK 371

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +P  I   N  + +  A ++    D+++V G
Sbjct: 372 SALPQAIIADNPRKGLVVAKKIAEPNDLIIVTG 404


>gi|197116890|ref|YP_002137317.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226706323|sp|B5EBQ2|MURC_GEOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197086250|gb|ACH37521.1| UDP-N-acetylmuramate--alanine ligase [Geobacter bemidjiensis Bem]
          Length = 461

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 143/433 (33%), Gaps = 50/433 (11%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           + G    GH     A    A A +VV S+    D    + ++  ++ V    + L+    
Sbjct: 49  LGGEIFFGH-----AAENVANADVVVISSAVHDDNPEVVEAHLRLIPVIPRAEMLAELMR 103

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             YG      +AV GT GK++  S V  I  + G+    +     ++S   + RL     
Sbjct: 104 MKYG------IAVAGTHGKTTTTSMVATILSKGGIDPTIV-IGGRLNSLGTNARLGQG-- 154

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 ++       + + +                      TN+  DH+D++   +   
Sbjct: 155 ---QFLVAEADESDGSFLLLS---------------PTIAVVTNIDADHLDFYSGIE--- 193

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIH 286
                 F E + K     +      +  +         R  S G   +       V    
Sbjct: 194 -EIKDTFVEFINKIPFYGLAVLCLDNGNIADVLPRVKKRFTSYGMSAQADFRATDVKLSG 252

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                    +G    +  F +PG   V NAL A  + + + I    + E       V  R
Sbjct: 253 FSTSFVAHHKGVRLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFGGVGRR 312

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMG 403
           F   G  + G  +  DY H    ++  L   +      R++VVF      R +       
Sbjct: 313 FHLKG-EANGIMVVDDYGHHPTEIKATLGAAKAGFAENRLVVVFQPHRYSRTKELFEEFV 371

Query: 404 KIALDLADIAIVTDDNPRSEDP-EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEML 456
           K A   AD+ I+TD  P  E P E + AE +       G        +R +       +L
Sbjct: 372 K-AFHDADVLILTDIYPAGEAPIEGVTAEALANRVRRHGQKDVTWISDRDKLCEHLERVL 430

Query: 457 NKQDVLVVAGKGH 469
              D+L+  G G+
Sbjct: 431 APGDILLTLGAGN 443


>gi|37543036|gb|AAL79558.1| MurE [Neorickettsia sennetsu]
 gi|37543039|gb|AAL79560.1| MurE [Neorickettsia sennetsu]
 gi|38565249|gb|AAR23989.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamiaopimelate ligase
           [Neorickettsia sennetsu]
          Length = 156

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 1/125 (0%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
            G  EF+       +I  D A T + L  +L +I+       + +V  C  + +      
Sbjct: 7   AGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDVTLVLRCSENYEGKNTLK 66

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M KIA  + +  I T D+  S   EK R E++   P  IE  +R +A+  AI      ++
Sbjct: 67  MAKIAAKMVNRIIFTSDSNGSTLTEKSRRELMSCCPKAIEIEDRKKAMEYAINNCKPSEI 126

Query: 462 LVVAG 466
           +V+ G
Sbjct: 127 IVMQG 131


>gi|226357454|ref|YP_002787193.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319444|gb|ACO47439.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 886

 Score = 74.2 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 133/396 (33%), Gaps = 40/396 (10%)

Query: 105 FASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            +       P  +  +++TGT+GKS+ A  V  I + +G  +   G T++   +    ++
Sbjct: 466 LSMLFPKGTPCRMPIISITGTNGKSTTARMVAHIMRHAGKVT---GLTTSNGIYVDGEQI 522

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-Q 221
            T        A   LS + V    +E +  G+ +  L   +   G+  N+  DH+     
Sbjct: 523 LTGDTTGPKSAKVILSDRNVEVAVLETARGGILREGLGFDRCDVGAVLNIQPDHLGVKGI 582

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                      L  E++     +++ ADD  +  +  +A          G      HL+ 
Sbjct: 583 DTVEDLAWVKSLIVEVVTDSGTSVLNADDPLTWAMRHQARGRLALFSMQGGPTAPEHLRA 642

Query: 282 VCAIHNKQQVTISVEGK------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             A      V             +     PL     +   L            +A  +  
Sbjct: 643 HIADGGLALVREGTVVGDELVLYEDGQRTPLMRARDIPATLGGFAKVNIQNALAAAAMAV 702

Query: 336 LEK----------------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +                     PGR      +    R+ +DYAH  + LE +   +  +
Sbjct: 703 AQHIELPVIRAALSSFSTSFEQSPGRLNL--YDGHPFRVLLDYAHNPSGLEYLGDLVAHL 760

Query: 380 TS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-----PRSEDPEKIRA-E 431
               GR+I V G  GDR       MG++A    D  I+ +D+     P  E    +    
Sbjct: 761 RPARGRVIGVLGVAGDRRDADMRQMGELAARAFDELIIREDDLRRGRPAGEGARHVAEGA 820

Query: 432 IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  G P           EA+  A+ M  + D++V+ 
Sbjct: 821 LASGFPAERLHTILPEPEAVSAALSMARQGDLVVIL 856


>gi|320106156|ref|YP_004181746.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924677|gb|ADV81752.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 454

 Score = 74.2 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 147/424 (34%), Gaps = 49/424 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKH 113
           GH     A A+ A+ IV SSA +  +          TPI+      + L+      YG  
Sbjct: 57  GHD---AANARDADVIVTSSAVAKSNPEVVEARSRKTPIIHRA---EMLAELMRLKYG-- 108

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ G  GK++  S V  +    GL    +     +++   + RL     +     
Sbjct: 109 ----IAIAGMHGKTTTTSMVASVLAGGGLDPTVV-VGGRVNALGSNARLGNSRYLVAEAD 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  I    TNL R+H+D ++       A    
Sbjct: 164 ESDRSFLK--------------------LSPILAVVTNLDREHMDAYRDMADVETA-FVE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + +P         DD   + ++ R                 + +    +  +      
Sbjct: 203 FMDRVPFYGATTACIDDPMLRAILPRVRRRVMTYGESPDADFQLRMLPKDSDCHAVFEVN 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +       F   +PG+  V NA  A  + + +GI  + + E LE    V  RF+  G   
Sbjct: 263 TKGLLLGPFRLHVPGKHNVLNATAAVAIGVELGIAPSQIAEGLEAFRGVDRRFQVKGV-V 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
           RG  +  DY H    +   L+  R    GR++V+F     R      +M + A     AD
Sbjct: 322 RGVTVVDDYGHHPTEVRATLQAARECGYGRVLVLF--QPHRYSRTAELMEEFATAFGDAD 379

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +  V D    +E+P      E + A++          G+  EA+   +      DV++  
Sbjct: 380 LVEVVDIYAANEEPIVGVTAEALVAQMQG--TRAEYAGSFEEAVGRLVSEARDGDVILTM 437

Query: 466 GKGH 469
           G G+
Sbjct: 438 GAGN 441


>gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
 gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score = 74.2 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 144/418 (34%), Gaps = 33/418 (7%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +++I      L        +   ER +  +S D+R +  G +F+A+ G + DGH F    
Sbjct: 10  REIIAATGAALRGAGEGETLG--ERPVYGLSFDTRSLAKGDLFIALSGAR-DGHDFAQA- 65

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
                 A   ++A  L    A +    P L+VD+  + L   A     +    ++AVTG+
Sbjct: 66  -----AADKGAAAALLTHRPADLSEALPGLMVDDPLRALEDLARAARQRCFGALVAVTGS 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++    ++      G         +               PI LA   S        
Sbjct: 121 VGKTTTKEMLRAALSPLGEVHAAAKSFNNH----------IGVPISLA---SLPQQAAFG 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +  +  G     +D ++      T++   H++   +     +AK       + +   
Sbjct: 168 VFEIGMNHAGEITPLVDLVRPHVAIITSVAAVHLENFSSVDGIADAKA-EILSGIRRGGA 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ----QVTISVEGKD 299
           A++ +D+ Y + ++ RA   G   +     G                   +  I++ G+ 
Sbjct: 227 AVLPSDNPYYERLVSRARECGVERIVPFGFGDGARPGIWGTAPVMIEGGSRTEIAIAGER 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG  QV NAL       A+G+D   ++E L       GR        RG ++ 
Sbjct: 287 HVLELGVPGTHQVSNALAVIAAGAALGLDLESMIEGLASFRAGAGRGARHHVTIRGKKVL 346

Query: 360 V---DYAHTSNSLE---MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           V    Y     S+      L     +  GR + V G   +       +   +A  + D
Sbjct: 347 VLDESYNANPTSMASALAQLGETEPVAGGRRLAVLGEMKELGPTSDALHAGLAGPIED 404


>gi|270700814|ref|ZP_06223056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae HK1212]
 gi|270315852|gb|EFA27951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae HK1212]
          Length = 209

 Score = 74.2 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 3/146 (2%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           N P++      + LS  A   Y    +N+  + VTGT+GK++++  + Q  +  G  +  
Sbjct: 5   NVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTGTNGKTTISQLLAQWAELLGHRAAV 64

Query: 147 IGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
           +G           + + TT S + +  +LS     G    S+E SSHGL QHR++ +   
Sbjct: 65  MGTIGNGLLGQIVEAKNTTGSAVEIQSSLSIFKHAGADFTSIEVSSHGLAQHRVEALHFK 124

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKM 231
           A  FTNL RDH+DYHQ+ + Y  AK 
Sbjct: 125 AAIFTNLTRDHLDYHQSMENYAAAKK 150


>gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R3021]
 gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 22.4-21]
          Length = 399

 Score = 74.2 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 134/407 (32%), Gaps = 31/407 (7%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           +QGA A+VV    S            P LVV +TR  L   A  L  K     +A+TG+S
Sbjct: 2   SQGALALVVQQENSSIL--------VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSS 53

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V      I Q +   S  +  T+   +      LT                     
Sbjct: 54  GKTTVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLL---------RLTEKHRFAV 104

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + + A+      +    ++  A    N+   H++   +      AK  ++  L       
Sbjct: 105 IELGANHQNEINYTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTK----- 159

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
              A        +              + GK   +K V         T+     + D   
Sbjct: 160 NGVAIINAEHNHLDIWQKEISNHAIQYFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISL 219

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P  GE  V NAL A  L + +G   A V   LE+   V GR   +        +   Y  
Sbjct: 220 PYLGEHNVKNALAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNLLLLDDTYNA 279

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
             +SL   +  +++  + RI+ V      G+        +G+    L ++ +V       
Sbjct: 280 NKDSLCAAIDVLKSYDAFRILCVADMKELGENSLAIHREVGQYIN-LVNLDLVCS---YG 335

Query: 423 EDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   I   ++        E  + +  +      L +   +VV GKG
Sbjct: 336 NESAVISEAVLGKHFTDKTEMVDFL--VPLIENQLQQNKKVVVLGKG 380


>gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 510

 Score = 74.2 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 144/459 (31%), Gaps = 59/459 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V  D+  +  G +FV + G   DG    PQA   GA A +V              +  P 
Sbjct: 50  VVIDTHQVTPGALFVGLPGEHVDGADLAPQAAGAGAAAALVGHDV---------TAGLPR 100

Query: 93  LVVDNTRKFLSLFASRLYGKHPENIL---AVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           L+V++  + LS  A+ +        L   A+TG+SGK+S    + Q+ + +G +    G 
Sbjct: 101 LIVEDAGRGLSALATGVVATELARGLITFAITGSSGKTSTKDLLAQVLEATGPTVSPAGN 160

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                    +N +  P       A    ++       + +   G        +     + 
Sbjct: 161 --------HNNEIGVPLS-----ACGVDATTRYLVSEMGSRGKGDVATLCRIVPPRISTV 207

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+    +Q A   A      E LP +  A++ ADD     +  R +    R  +
Sbjct: 208 LNVGTAHLGEFGSQDAIAEA-KGEIVEALPADGWAVLNADDPRVAAMAPRTNAHIARWTT 266

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG--- 326
            G          V A H           +             V   L+ A   +      
Sbjct: 267 TGAARASDAELFVSADHITTDALQRGSFQLRVTRGGATSTHPVRLRLIGAHQVLNATAAA 326

Query: 327 --------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR- 377
                     +A+           P R E          I   Y    +S+   L  +  
Sbjct: 327 TMALAAGLDPAAVAASLSTATTRSPLRMELHELRGGIALINDSYNANPDSMAAALHAVAA 386

Query: 378 -------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-----DIAIVTDDNPRSEDP 425
                       R I + G  G+       +  ++A  LA     DI I   D+  +   
Sbjct: 387 MGAARHDEYPRARTIAILGEMGELGTQSARLHARVA-RLAADLGIDIVIALGDHAGT--- 442

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +      G         R E +  ++E++   D+++V
Sbjct: 443 --MAQAAREGGAQARAA--RKEEVADSLELV-PGDIVLV 476


>gi|114330272|ref|YP_746494.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314677|sp|Q0AJE2|MURC_NITEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114307286|gb|ABI58529.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
          Length = 473

 Score = 74.2 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 139/432 (32%), Gaps = 54/432 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H    + I   A+A+V+S+A    +          I VV      L+       G     
Sbjct: 55  HTHAAENIQS-ADAVVISTAIQPDNPEVIAARERRIPVVPRAM-MLAELLRLHQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  I   +G     +     + +     RL     I +    S 
Sbjct: 108 -IAIAGTHGKTTTTSLVASILAEAGQDPTFV-IGGRLKTVDSHARLGKGEFIVVEADESD 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S                       ++ +    TN+  DH+  ++            F E
Sbjct: 166 ASFLY--------------------LQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIE 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTI 293
            LP    A++ ADD +   ++                 +          C +H    + +
Sbjct: 206 HLPFYGMAVLCADDPHVSAIIPMVSKQVTTYGITSENAQIRATDIRHDQCKMHFCAHIGV 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--- 350
           +   +  D    LPG+  V NAL A  +   + I    +++ L     V  RF+  G   
Sbjct: 266 NGSARTLDITLNLPGKHNVLNALAAIAVGNELNIPDEAMVKALATFGGVDRRFQQYGEIR 325

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIAL 407
             + R   +  DY H    +   +   R    GR +V+        + +       ++  
Sbjct: 326 LPDRRSFTLIDDYGHHPAEIAATMAAARNAFPGRRLVLVFQPHRYSRTRDLFEDFVRVLS 385

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-----------KGNRIEAIRTAIEML 456
             AD  ++T+     E+P  I A+    +                      A+ T +   
Sbjct: 386 S-ADALLLTEIYSAGEEPI-IAADSKSLVRAIRVQGKIEPIYIEHINELKSAVHTVV--- 440

Query: 457 NKQDVLVVAGKG 468
            + DV+++ G G
Sbjct: 441 QEGDVVLIMGAG 452


>gi|168182271|ref|ZP_02616935.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Bf]
 gi|182674522|gb|EDT86483.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum
           Bf]
          Length = 873

 Score = 74.2 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  GI              +  EA++ AIE  N  
Sbjct: 780 ENFDYIYIKEDRDKRGRKDGEIVDLLKKGILETGFKNSKLNIILDEEEALKKAIESSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|228472694|ref|ZP_04057454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276107|gb|EEK14863.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 444

 Score = 73.8 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 123/364 (33%), Gaps = 42/364 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR        I+A+TG++GK++  + V  + + +GLS    G               
Sbjct: 93  EFASRYTD---AKIIAITGSNGKTTTTTLVYHLLKEAGLSVAVGGNIG------------ 137

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++ +   +  +E SS  LD   +           N+  DH+D +  +
Sbjct: 138 -------YSFARLVAQEPKEYYVLEISSFQLDD--ITSFHPHIALLLNITPDHLDRYNYE 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        E        I  ADD  + + + +       +     +        + 
Sbjct: 189 FQNYIDAKMRITEFQQAADFLIYDADDPVTAQEIGKGQVKAQLLPFSLEKTFERGAWSLD 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLH 340
             +      ++V    F+           +N   A+ A  +   + + +  +   L    
Sbjct: 249 EKNMY----VNVNQNIFEMSTKDLTIKGKHNLKNAMGATMVAKLLNVRNENIRNSLMTFQ 304

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VP R EFV        I    A   NS+      + ++  G + +V   G D+     P
Sbjct: 305 GVPHRLEFVREVEGVRYINDSKATNVNSV---YYALDSMEEGLVWIV--GGQDKGNDYTP 359

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           ++  ++  +  I  +  DN      +KI       +P  IE  +  +A++    +  + D
Sbjct: 360 LIPYVSKKVKAIVCLGLDN------QKIIQTFQSIVPTIIETHSMEDAVQVGRGLSQEGD 413

Query: 461 VLVV 464
            +++
Sbjct: 414 TVLL 417


>gi|170760804|ref|YP_001785449.1| cyanophycin synthetase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407793|gb|ACA56204.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A3
           str. Loch Maree]
          Length = 873

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKINHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  G+              +  EA++ AIE  N  
Sbjct: 780 ENFDYIYIKEDKDKRGRMDGEIADLLKKGVLETGFKNSKLNIILDEEEALKKAIEFSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|189502202|ref|YP_001957919.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497643|gb|ACE06190.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 450

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 122/361 (33%), Gaps = 36/361 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR       +++A+TG++GKS+       + +  GL+    G   T           
Sbjct: 94  EFASRYTK---ASLIAITGSNGKSTTTHLAYHLLKAGGLNVGIAGNIGTS---------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        +  +   +  +E SS  L+   L   K       N+  DH+D +  Q
Sbjct: 141 ---------FARKVLLEEHNYYVLELSSFQLE--HLQTFKADIACILNITPDHLDRYDNQ 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A        + KE   I   DD   +E + +      ++  +       H   V 
Sbjct: 190 LNNYIAAKFRILRNMIKEGYFIYNQDDTNIREYLVKQTTNLPQLYPISLTQSTHHGAYVE 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             H       +   +      PL G+  +YN + A  +   +G+  A +L+ L     +P
Sbjct: 250 NNHLHFVGD-NYNFQLPTQTLPLLGKHNIYNTMAAISIASLLGLSYASILDGLRTFKGLP 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E++   ++        A    S  + L++  +      I+    G D+      +  
Sbjct: 309 HRMEWIANVNQVSFYNDSKATNVESAAVALESFTS-----PIIWIAGGYDKGNDYNVLKP 363

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  +  +  DN      + I            E     EA+  A  +   QD+++
Sbjct: 364 IVKNSVKALICLGKDN------QTICKAFKESNIPIYETQVMQEAVSLAYTLAKPQDIVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|15805794|ref|NP_294492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
 gi|6458474|gb|AAF10342.1|AE001931_13 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
          Length = 433

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR       FVA+ G K  G+ F+ +A+A GA  ++                    
Sbjct: 23  LTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPFVLTDLDVPRA------------ 70

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + VD+ R  L  +A     K+P  ++ +TG++GK++  S+         +  F   P
Sbjct: 71  VRVDDARGALFAWARSERAKNPL-VVGITGSAGKTTAKSYAAAALDAHFMPVFNTMP 126


>gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 606

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 142/469 (30%), Gaps = 60/469 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R ++AG  F+A+ G+  DGH F+ QA  +    +V +              +  
Sbjct: 138 SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEKQCAGVVAN--------WVPHGWSRG 189

Query: 92  ILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            + V+ +T   L   AS +  +    ++ +TG+ GK++  +                G  
Sbjct: 190 FVQVEGDTLDALQALASDVRARFWGPVVGLTGSVGKTTARAMTTLA---------LQGLN 240

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +        + L +  S         + +  +  G      +  K       
Sbjct: 241 GHVHQAPGNFNNDIGVALTLLRLNSRSV---ACVLELGMNHAGEILELANTAKPDVRVLL 297

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-------------- 256
           N+G  H++          A               I+ ADD  +  V              
Sbjct: 298 NVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDPLAMAVPLPAGVRVVRFGRK 357

Query: 257 ----------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                            G  V+         +   + +    +    +V     +F  P 
Sbjct: 358 EGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNETVTRTRVEFEIPS 417

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDY 362
           PG     NA  AA +   +G+    V   L     +  R +              I   Y
Sbjct: 418 PGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGPASHVQILVINDCY 477

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
                S+E  L+ ++++ S R I + G     G+        + ++ +D     ++    
Sbjct: 478 NANPMSVEASLQLLQSVKSNRRIALLGDMFELGEISLSSHKGILQLCVDFKLDLVIVVGT 537

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             SE      AE   G    I   N           ++  D ++V  KG
Sbjct: 538 CFSE-----AAEYFKG-RDIIAFRNTSSLTNHLARFISPGDSVLV--KG 578


>gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 142/469 (30%), Gaps = 60/469 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            + +D+R ++AG  F+A+ G+  DGH F+ QA  +    +V +              +  
Sbjct: 138 SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEKQCAGVVAN--------WVPHGWSRG 189

Query: 92  ILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            + V+ +T   L   AS +  +    ++ +TG+ GK++  +                G  
Sbjct: 190 FVQVEGDTLDALQALASDVRARFWGPVVGLTGSVGKTTARAMTTLA---------LQGLN 240

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             +     +        + L +  S         + +  +  G      +  K       
Sbjct: 241 GHVHQAPGNFNNDIGVALTLLRLNSRSV---ACVLELGMNHAGEILELANTAKPDVRVLL 297

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV-------------- 256
           N+G  H++          A               I+ ADD  +  V              
Sbjct: 298 NVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDPLAMAVPLPAGVRVVRFGRK 357

Query: 257 ----------MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                            G  V+         +   + +    +    +V     +F  P 
Sbjct: 358 EGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNETVTRTRVEFEIPS 417

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDY 362
           PG     NA  AA +   +G+    V   L     +  R +              I   Y
Sbjct: 418 PGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGPASHVQILVINDCY 477

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDN 419
                S+E  L+ ++++ S R I + G     G+        + ++ +D     ++    
Sbjct: 478 NANPMSVEASLQLLQSVKSNRRIALLGDMFELGEISLSSHKGILQLCVDFKLDLVIVVGT 537

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             SE      AE   G    I   N           ++  D ++V  KG
Sbjct: 538 CFSE-----AAEFFKG-RDIIAFRNTSSLTNHLARFISPGDSVLV--KG 578


>gi|20809114|ref|NP_624285.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517793|gb|AAM25889.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 879

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 131/370 (35%), Gaps = 28/370 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK++V   V  I +  G +                 +     P      L+  
Sbjct: 481 VSITGTNGKTTVTRMVAHILKTYGYTVGMTTTDGIYIDDKCIYKGDNTGPKSARTCLADK 540

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEE 236
           +        +E +  G+ +  L       G  TN+  DH+                L  E
Sbjct: 541 NIDA---AVLETARGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKALVVE 597

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIH 286
            +  +  +++ ADD  +  + K+A                       G  +++K+   + 
Sbjct: 598 AVKDDGYSVLNADDPMTPYLAKKAKGKIIYFSMYDNNLTVKRHIENGGIAVYVKEGVIVI 657

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VV 342
              Q+   V  ++            + N+L A      + +   ++ + ++  +      
Sbjct: 658 ANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFYPDTTHN 717

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGRF     N    R+ VDY H    ++ +++  R + + R+I V G  GDR       +
Sbjct: 718 PGRFNL--FNIGSFRVLVDYGHNVEGIKKVIEAARKLDANRLIGVIGVPGDRMDSSIFKV 775

Query: 403 GKIALDLADIAIVTDD-NPRSE---DPEKIRAE--IIHGI--PGFIEKGNRIEAIRTAIE 454
           G++     D   + +D + R     +  KI  E  I  G+            EA++ A+ 
Sbjct: 776 GEVCGGGFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILKETEALKAAMH 835

Query: 455 MLNKQDVLVV 464
                D++VV
Sbjct: 836 SAEAGDLIVV 845


>gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 490

 Score = 73.8 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS+DSR I  G  FVA+ G   DGH F+  A  +GA A +VS   +L           
Sbjct: 33  RGVSTDSRTIAPGAAFVALAGESFDGHRFLDAAAQRGAAAFIVSREVALPPGGGA----- 87

Query: 91  PILVVDNTRKFLSLFASRLYGKH--------PENILAVTGTSGKSSVASFVQQICQRSG 141
             ++V++    L   A     +         P  I+A+ G++GK++    +  +    G
Sbjct: 88  --VLVNDGLTALGALARAHRERWRAGAHPGGPRAIVAIGGSAGKTTTTRTIAALLAAVG 144


>gi|261414976|ref|YP_003248659.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371432|gb|ACX74177.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325875|gb|ADL25076.1| UDP-N-acetylmuramate--L-alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 460

 Score = 73.8 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 141/416 (33%), Gaps = 51/416 (12%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A+ +V SSA    +           P++     R+   L            +  L++ GT
Sbjct: 69  ADLVVYSSAIPFDNPELVEARARRIPVI-----RRAEMLGELMRL------KYTLSIAGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  I + +GL    I     +       ++     +     ++       +
Sbjct: 118 HGKTTTTSIVGAIWEEAGLDPTII-VGGIVKGKCSGAKVGHGDYL-----IAESDEFDRS 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +S+  SS                  TN+  DH+D ++   A  +A    F   +P    
Sbjct: 172 FLSMMPSS---------------AIITNIDADHLDTYENIDAIKDA-FTQFANKIPFYGQ 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
            I+  DD   ++++                     ++ +  +    Q  I  + K    F
Sbjct: 216 VIVCLDDPNVQQILSHLKKPVITYGFTRQAKY--RVENLVFVKGYPQFEIVCDVKSLGQF 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NA  A  L +  GI   +  + +     V  RFEF+G    G  ++ DY
Sbjct: 274 KLQIPGRHNVLNATAAVALAVEEGISIEVARKAVAAFEGVKRRFEFIG-EKNGVMVFDDY 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AH        L   R     + I+V        R + +    G  A    D+ +VTD  P
Sbjct: 333 AHHPTEATATLLGFREAFPDKRIIVAFQPHLFTRTRDQHEAFGS-AFSNCDVLLVTDIYP 391

Query: 421 RSEDPEKIR-------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E P +         +    G       G+    I    E+L   DV+V+ G G+
Sbjct: 392 SREKPIEGVTGAMVANSAADRGHRDARFIGDVNNLIPVCKELLKPNDVIVLMGAGN 447


>gi|30248995|ref|NP_841065.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas europaea ATCC
           19718]
 gi|44888192|sp|Q82VS2|MURC_NITEU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30138612|emb|CAD84903.1| murC; UDP-N-acetylmuramate--alanine ligase protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 473

 Score = 73.8 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 144/430 (33%), Gaps = 50/430 (11%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H    + I   A+A+V+S+A    +          I VV      L+       G     
Sbjct: 55  HTHAAENIQS-ADAVVISTAIHSDNPEVIAARERRIPVVPRAM-MLAELLRLRRG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+ GT GK++  S V  I   +G     +     + +     RL     I +    S 
Sbjct: 108 -IAIAGTHGKTTTTSLVASILAEAGQDPTFV-IGGKLKTVDSHARLGKGEFIVVEADESD 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S                       ++ +    TN+  DH+  ++            F E
Sbjct: 166 ASFLY--------------------LQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIE 205

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTI 293
            LP    A++  DD + +E++                 +          C +H    + +
Sbjct: 206 HLPFYGMAVLCVDDPHVREIISMITRPVTTYGIASEDAQICATNIRHDRCRMHFLAHIGV 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +   +  +    LPG+  V NAL A  +   +G+    +++ L     V  RF+  G   
Sbjct: 266 NGSPRTLEVTLNLPGKHNVLNALAAIAVGNELGVPDEAIVKALATFGGVDRRFQQYGEIP 325

Query: 354 RGGRI----YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +       DY H    +   +   R    GR  +V      R    R +       L
Sbjct: 326 LPDQGSFALIDDYGHHPAEIAATMAAARNAFPGRR-LVLAFQPHRYSRTRDLFEDFVRVL 384

Query: 410 --ADIAIVTDDNPRSEDP------EKIRAEII---HGIPGFIEKGNRIEAIRTAIEMLNK 458
             AD+ ++T+  P  E+P      + +   I       P +IE+ + ++A    I     
Sbjct: 385 SGADVLLLTEVYPAGEEPIIAADSKSLARAIRVQGKIEPIYIEQIDELKATIHTI--AQD 442

Query: 459 QDVLVVAGKG 468
            DV+++ G G
Sbjct: 443 GDVILIMGAG 452


>gi|258511259|ref|YP_003184693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477985|gb|ACV58304.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 458

 Score = 73.8 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 127/380 (33%), Gaps = 51/380 (13%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
               ++V +        AS    +    I A+TG++GK++  + V ++ + SG      G
Sbjct: 99  KAAHVIVTDV-----EIASWFERRP---IYAITGSNGKTTTTTLVGEMLKASGYHPIVAG 150

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T      D                         + +E SS  LD           G+
Sbjct: 151 NIGTPVCDVVDQ--------------------PGDLLVLEVSSFQLD--GTHTFHPRGGA 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRAHNAGC 265
             N    H+DYH T +AY  AK +LF    P +   + +        + E+  R      
Sbjct: 189 LLNFYPAHLDYHGTYEAYQQAKWKLFANQTPDDVAILNWDQALVRDRAGELAARVRGFSL 248

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                      I    V     ++   + V+         LPG   + NA  AA L +A 
Sbjct: 249 EGAPFDEGVGVIDGALVAVRGRERTPILPVD------QVALPGRHNLQNAAAAAALALAA 302

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G     V   L     V  R EFV   S         A   +      + +R+   G  +
Sbjct: 303 GASVEAVARVLATFQGVEHRLEFVREVSGVRYYNDSKATNPD---AARQALRSFERG--V 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGN 444
           V    G DR     P++  I+  +    ++       E  EK+R  +   G+       +
Sbjct: 358 VWIAGGLDRGISFDPLLPDISGRVRAAVLL------GETKEKLREVLARAGVSTCAFAAS 411

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
             EA+R A  M    DV+++
Sbjct: 412 MEEAVREASRMAEPGDVVLL 431


>gi|257092207|ref|YP_003165848.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044731|gb|ACV33919.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 462

 Score = 73.8 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 140/430 (32%), Gaps = 52/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA+A+VVSSA    +       +  + VV    + L+       G    
Sbjct: 56  GH---AAANVNGADAVVVSSAVRADNPEVIAARSRQVPVVPRA-QMLAELMRLKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  I    G+    +     +++   +  L +   +      S
Sbjct: 108 --IAVAGTHGKTTTTSLVASILAAGGMDPTFV-IGGRLNAAGANACLGSGDFLVAEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH++ +             F 
Sbjct: 165 DASFLF--------------------LSPVISVVTNIDADHMETYGHDFNRLKQAFVEFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TIS 294
           + LP    A++ ADDA  +E+M +                +           +     ++
Sbjct: 205 QRLPFYGVAVLCADDANVREIMPQVSKQIVTYGLDPAANFYAENVTAEGGQMRFDCVRVN 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
                      LPG   V NAL A  +   +G+    +L+ L     V  RF+  G    
Sbjct: 265 GSVSRLPVTLNLPGRHNVLNALAAIAVASEVGVADDAILKALTDFRGVGRRFQRYGEIAL 324

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALD 408
            +     +  DY H    +   L   R    GR +++        R + +     K+   
Sbjct: 325 ADGGCFTLVDDYGHHPVEMSATLTAARGAFPGRRLLLAFQPHRYTRTRDRFEDFVKVLS- 383

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNK 458
             D  ++T+    SE P        +   +              G+  +AI   ++++  
Sbjct: 384 GVDALVLTEVYAASEQPIVAADGRALARALRVAGKVEPVFVESIGDVPQAI---LDIVRD 440

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 441 GDVVITMGAG 450


>gi|291296378|ref|YP_003507776.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
 gi|290471337|gb|ADD28756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
          Length = 439

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 12/128 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +++  DSR +  G  F A+ G +  G  F  QA+  GA  +V    +             
Sbjct: 31  HDLHWDSRQVGPGVAFFALPGARTHGREFGQQAVQAGAAFVVSDLNHPGA---------- 80

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
             + V    + L      L  +   ++LAV G+SGK++    + Q               
Sbjct: 81  --VQVARPERALLAVGRALRDQFRGSVLAVGGSSGKTTTKECLAQGLAWPAPEGNLNNAP 138

Query: 151 STISSFAQ 158
                F  
Sbjct: 139 GLTRFFFH 146



 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 9/160 (5%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P PG   V  AL A  +   +    A  +E L  L + PGR + +        I+  Y
Sbjct: 257 HLPYPGVGPVMGALAALAVARMLDKPLAQTIERLAALRLPPGRMQRLRLGGID-FIHDAY 315

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
                S +  +        GR  +V G   +  Q       + A  LA        N   
Sbjct: 316 NANPLSFKAGM-AFLQAQPGRKWLVLGRMAELGQEALKHHLE-AARLAAAV---SPNLVF 370

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             P   +     G           EA++     +   D++
Sbjct: 371 VGPFAKQQAAEAGGTAVETI---EEAVQLLFGKVQPGDLV 407


>gi|153207157|ref|ZP_01945936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165918426|ref|ZP_02218512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212219390|ref|YP_002306177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuK_Q154]
 gi|226711903|sp|B6J5K6|MURD_COXB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120576818|gb|EAX33442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165917932|gb|EDR36536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212013652|gb|ACJ21032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuK_Q154]
          Length = 442

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 116/356 (32%), Gaps = 40/356 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 + I+A+TG++GK++V + V  + + +G +    G               TP P 
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIGEPVLEQI-----TPEP- 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                          +  +E SS  L+      ++  A +  N+  DH++ + T Q Y  
Sbjct: 154 --------------DYYVLELSSFQLET--TFSLRSQAATILNISEDHMNRYATLQDYLR 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R     +  +    I   D       +   +       + +         +   + K
Sbjct: 198 AKQR-----IYTDCFIPIVNADEP-----EIWCHLPFNKKPLSFGLNNAADFSLAEHNQK 247

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +    +         L     + NAL A  L  A  I    +L  L     +  R ++
Sbjct: 248 TSIAYQGKILMPIQELKLNARHHLQNALAALALGTAAKIPIENMLHLLRDFSGIRHRCQW 307

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V                  +    ++++     G++I++ G  G +     P+   +   
Sbjct: 308 VRKYKEIDYYNDSKGTNVGATRAAIESLGQAAKGQLILIAGGQG-KGADFSPL-KDVVKR 365

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                I+       ED   +  + +  I       +  EA++ + +     D++++
Sbjct: 366 YVKQVILI-----GED-APLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL 415


>gi|318060323|ref|ZP_07979046.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actG]
 gi|318077690|ref|ZP_07985022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actF]
 gi|333023747|ref|ZP_08451811.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
 gi|332743599|gb|EGJ74040.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
          Length = 470

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 148/429 (34%), Gaps = 45/429 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFAS 107
           G     GH     A      A+VVSSA    +           P++   +    L     
Sbjct: 54  GATVHIGHDAAHLAEDT--SAVVVSSAIRADNPELVRARERGIPVVHRSDALAAL----- 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   LA+ GT GK++  S +       GL          + +   +    T   
Sbjct: 107 -MAGTRP---LAIAGTHGKTTTTSMLAVSLTTLGLD-PSYAIGGDLDAPGSNAHHGTGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + + +  +
Sbjct: 162 FVAEADESDRSFHTYA--------------------PEVAVVLNVELDHHANYASIEEIY 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIH 286
            +      +++P  +  I    +   +   +    A  RVL+ G  +   + + KV    
Sbjct: 202 ESFETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+S+ GK   F   +PG    +NA+ A    +++G+    +   L     V  R 
Sbjct: 262 LTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
           +  G  + G ++   YAH    +   L+ +R    GRI+VVF      R Q     MG+ 
Sbjct: 322 QLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRTQELGKEMGQ- 379

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIRTAIE-MLNKQ 459
           AL LAD ++V D  P  EDP +     +    G     +       + +  A+  M    
Sbjct: 380 ALALADSSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPG 439

Query: 460 DVLVVAGKG 468
           D+++  G G
Sbjct: 440 DLVLTMGAG 448


>gi|251772197|gb|EES52767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 488

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 132/372 (35%), Gaps = 28/372 (7%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            N R  L  +A+ L+ +    ++A+ GT+GKS+  + V  + + +G S F  G      S
Sbjct: 98  SNIRGEL-EWAASLWDRP---VVAIGGTNGKSTTTALVGHLLKSAGFSPFIGGNFGVPFS 153

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                  T                       +E SS   +               N+  D
Sbjct: 154 EGVRLMRTA---------RKEGKRDPFDVAVIEVSSFQTESM--QSFSPDIYLLLNITPD 202

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+D + +   Y  AK+ +     P  +     + D + +    R       V S    G 
Sbjct: 203 HLDRYDSLAQYRLAKLHVASLFSPSTTVIWNASQDDWRE-WGPRTKARSVFVGSAELPGP 261

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA--GLCIAIGIDSALVL 333
            + L       +  + + SV    +  +     +   ++ L     G  +   ID  ++ 
Sbjct: 262 GVVLSGSHLQSHGLRDSFSVSTAGYRLIGGGNLQNLAFSVLATILLGETMGRRIDPGILE 321

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG- 392
           E +     +P R E V T      +    A    ++E  L  +  +  G   VV   GG 
Sbjct: 322 EAIASFTGLPHRMERVATVRGVTFVNDSKATNVGAVEAALAGLSDV--GHPHVVLIMGGR 379

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D+    RP++  +   + ++  +       E  EKIR ++   IP   E  +  EA+  A
Sbjct: 380 DKGGSYRPLIPWLKNHVREVVAI------GEAREKIRRDLGKEIP-IEEAQDLFEAVARA 432

Query: 453 IEMLNKQDVLVV 464
             + +  +++++
Sbjct: 433 FSVADSGEMVLL 444


>gi|114777866|ref|ZP_01452797.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551857|gb|EAU54397.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 452

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 110/397 (27%), Gaps = 39/397 (9%)

Query: 1   MKLQ--DLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
           M+L   D+      E ++ +  +        ++E+++D+R  ++G  F+A+ G   DGH 
Sbjct: 1   MRLSGADIQCATGGEWLHGMPEW--------VSEIATDTRGFKSGQCFLALRGPHFDGHR 52

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI- 117
           F           I        +          P L V++T + L   A     +  +   
Sbjct: 53  FAAPIADAACALI-----GDARGMRYWESLPVPQLQVEDTLRALGDIAHAWRMQLKQTTV 107

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A++G+ GK+S+ S +Q      GL                   L  P+   LA      
Sbjct: 108 VAISGSFGKTSLRSLLQHGFSALGLHVSATTANLNNLIGVPKTLLAVPADATLAL----- 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  +    S  G +  RL  I +      T +   H +           K  LF  
Sbjct: 163 -------IECGISEVG-EMERLSAIVQPDVAVLTGITNAHGEGLGGLAGVVEEKAALFSH 214

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           L      A+           +                                      E
Sbjct: 215 LNTGAWCALGEG--------VADQLGRHHISQPADLLDVEQSELSWRLDGQCLHFQRGDE 266

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +   P        +      + +        V + L       GR +    +    
Sbjct: 267 QSQIELSLPARHWATNMHLAACIIMRLMPEARLNDVAQALASWQAPAGRMQVRTGSGGCK 326

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            +   Y     S++  +  +  +   R I V G   +
Sbjct: 327 VLDDSYNANPVSMQAAIDTLVAMPGCR-IAVLGDMAE 362


>gi|281356125|ref|ZP_06242618.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
 gi|281317494|gb|EFB01515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
          Length = 459

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 152/442 (34%), Gaps = 33/442 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R    G +F+A+ G K D H ++ QA+A      +       +          P+
Sbjct: 31  VYTDTRVAGEGRLFLALPGEKFDAHDYLAQAVAA-GAGGLCIRRDRAEKLPEPCP--VPV 87

Query: 93  LVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           L VD+T       A+    + PE  ++AVTG+ GK+SV   V+ I   +      +    
Sbjct: 88  LEVDDTLAAYQKIANFHRRRFPELKLVAVTGSVGKTSVKEIVRAILTAASSPEAVLYTEG 147

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
             ++                  L   S      + +  + HG  +      + +A    +
Sbjct: 148 NTNNQIGVP----------QNLLRLNSRHRYAVIEMGTNHHGEIEPLSRMAEPLASLVNS 197

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+++  + +     K  +F   LP+   A+I AD    + +   A +         
Sbjct: 198 IAPCHLEFLGSLEGVAREKSHIF-CGLPESGAAVIPADGPAVEVLETAAESYRVFRFGED 256

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   + +       +  +S    + F   + L G  Q  NA  AA L +AIGI   
Sbjct: 257 VSRCDAAARYLGGTLEGSRFELSFRTGERFTLEWALTGRHQARNAAAAAALAVAIGIPPE 316

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFG 389
            +        +   R +    +     +   Y     S+   L N+       R+++V G
Sbjct: 317 TIAAGAVHARLPGMRSKVTRLDGV-TYVNDAYNANPGSMRAALANLAEFADPARLVLVLG 375

Query: 390 CG----GDRDQGKRPIMGKIALDLADIAIVTDDNP-----------RSEDPEKIRAEIIH 434
                 G      R ++         + ++T               RSE+  +  A+++ 
Sbjct: 376 EMRELGGSEAAEHRALVENALQTFPGVRLLTVGRAFGECPGALRFDRSEEVGETLAKLVR 435

Query: 435 GIPGFIEKGNRIEAIRTAIEML 456
                  KG+R  A+  A+   
Sbjct: 436 DGDLVFAKGSRGIAVELALPEA 457


>gi|295840062|ref|ZP_06826995.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295827778|gb|EDY43980.2| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 148/429 (34%), Gaps = 45/429 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFAS 107
           G     GH     A      A+VVSSA    +           P++   +    L     
Sbjct: 54  GATVHIGHDAAHLAEDT--SAVVVSSAIRADNPELVRARERGIPVVHRSDALAAL----- 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   LA+ GT GK++  S +       GL          + +   +    T   
Sbjct: 107 -MAGTRP---LAIAGTHGKTTTTSMLAVSLTTLGLD-PSYAIGGDLDAPGSNAHHGTGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + + +  +
Sbjct: 162 FVAEADESDRSFHTYA--------------------PEVAVVLNVELDHHANYASIEEIY 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIH 286
            +      +++P  +  I    +   +   +    A  RVL+ G  +   + + KV    
Sbjct: 202 ESFETFVGKIVPGGTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+S+ GK   F   +PG    +NA+ A    +++G+    +   L     V  R 
Sbjct: 262 LTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
           +  G  + G ++   YAH    +   L+ +R    GRI+VVF      R Q     MG+ 
Sbjct: 322 QLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRTQELGKEMGQ- 379

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIRTAIE-MLNKQ 459
           AL LAD ++V D  P  EDP +     +    G     +       + +  A+  M    
Sbjct: 380 ALALADSSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPG 439

Query: 460 DVLVVAGKG 468
           D+++  G G
Sbjct: 440 DLVLTMGAG 448


>gi|148265984|ref|YP_001232690.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
 gi|189028991|sp|A5G8J9|MURC_GEOUR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146399484|gb|ABQ28117.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
          Length = 458

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 135/425 (31%), Gaps = 44/425 (10%)

Query: 56  GHLFIPQAIAQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           G +FI  A    A   +VV S+    D    + +   ++ V    + L+      YG   
Sbjct: 51  GEIFIGHARENVANVDVVVISSAVHDDNPEVVEAMERLIPVIPRAEMLAELMRMKYG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  I  + G+    +     ++S   + RL            
Sbjct: 108 ---IAIAGTHGKTTTTSMVATILAKGGIDPTIV-IGGRLNSIGTNARLGQG--------- 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          +           +       TN+  DH+D+++            F
Sbjct: 155 -----------QFLVAEADESDGSFLKLSPTIAVVTNIDADHLDFYKDID----EIKDTF 199

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + + K     +      +  +         R  + G   +                 ++
Sbjct: 200 VQFINKVPFYGLAVLCLDNGNIADIIPLVKKRFNTYGLSTQADFRATDVRHTGFTTSFVA 259

Query: 295 VEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  F +PG   V NAL    + + + I  A +    +    V  RF+  G  
Sbjct: 260 HYKGTLLGEITFSMPGAHNVLNALATIAVAMELNIPFAEIQAGFKAFGGVGRRFQVKG-E 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLAD 411
            R   +  DY H    +   L   +     R++V F      R +       K A   AD
Sbjct: 319 VRDIMVVDDYGHHPTEIRATLAAAKGGWDRRLVVAFQPHRYSRTKELFEEFVK-AFYDAD 377

Query: 412 IAIVTDDNPRSEDP-EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I I+TD  P  E P E I AE +       G        +R       + ++   D+++ 
Sbjct: 378 ILILTDIYPAGEKPIEGITAESLAARIKRHGQKDVTYIADRNAVCDHLLGIVKPGDIVIT 437

Query: 465 AGKGH 469
            G G+
Sbjct: 438 LGAGN 442


>gi|254420158|ref|ZP_05033882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
 gi|196186335|gb|EDX81311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
          Length = 476

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 127/391 (32%), Gaps = 33/391 (8%)

Query: 23  MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
           +   +R I  ++ +SR I AG +F+A+ G + DGH            A    +A +    
Sbjct: 23  LHGDDRPITGLTYNSREIVAGDLFLALKGAR-DGHE----------FAANAFAAGAAAAL 71

Query: 83  SATIRSNTPILVVDNTRKFLSLFA-SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                     +VV +T   L     +           AVTG+ GK+SV   ++     +G
Sbjct: 72  VERPVEGGASVVVPDTLHGLEALGVAARERAPHVKRGAVTGSVGKTSVTQAIKAGLDLAG 131

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +   I                   P+ LA               +  ++ G        
Sbjct: 132 PAHASIKS----------YNNHIGVPLTLA---RMPVETRRAVFEIGMNAPGEIAPLSRF 178

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   A   T +G  HI+     +A    +     + L     A+   D A+S  +   A 
Sbjct: 179 VAPHAACVTTVGPVHIEAFADGEAGVAREKAAIFQGLVPGGTAVANGDVAFSGVLCDAAR 238

Query: 262 NAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             G R++  G   G    L           V   + G+  D+     G     N+L    
Sbjct: 239 AVGARLVVFGTDPGHDARLLDFRPDAEGAAVAAELFGRRIDYRLAQSGAHWGLNSLCVLL 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNI- 376
           +  A+ +     L+ L     + GR +       GG   +    Y     S+    K++ 
Sbjct: 299 MLDALDVALETGLQALAGFQPLAGRGQTRTVAVPGGAFTLIDESYNANPLSMTAGFKSLG 358

Query: 377 RTITSGRIIVVFGCG---GDRDQGKRPIMGK 404
              T+GR IVV       GD+       + +
Sbjct: 359 ARPTAGRRIVVLTDMLELGDQSHALHEGLAQ 389


>gi|241763201|ref|ZP_04761260.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
 gi|241367700|gb|EER61966.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
          Length = 859

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 130/384 (33%), Gaps = 30/384 (7%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA    G+ P  ++AVTGT+GK++ A  +  +    G+     G T+T   +    ++ +
Sbjct: 461 FAHGDDGRIP--VVAVTGTNGKTTTARLIAHLFTAQGMRV---GMTNTDGVYVNGRQIDS 515

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQT 222
                   A + L    V     E +  G+ +  L   +      TN+G        + T
Sbjct: 516 GDCSGPKSARNVLLHPEVDAAVFETARGGILREGLGFDRCQVAVVTNIGAGDHLGLNYIT 575

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----------NAGCRVLSVGY 272
                    R+  + +     A++ A D     +               +          
Sbjct: 576 TVEDLAVLKRVIVQNVTPTGYAVLNATDPIVAAMASACPGKIIYFASDRHHPVMATHRAQ 635

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + +++     +  +     ++  +D          FQV N + +       G+    +
Sbjct: 636 GHRTVYVDGDSIVAAEGSWRETIHLRDVPITRNGKIGFQVENVMASVAAAWGAGLPWQTI 695

Query: 333 LEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              L          PGRF     + +G  +  DY H  +++  +++ +  + + R  VV 
Sbjct: 696 RRGLSGFVNDSDNAPGRFNL--MDFKGATVIADYGHNPDAMRALVQAVEALPANRRSVVI 753

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNP---RSE-DPEKIRAEIIHGIPGFIEKGN 444
              GDR          I  ++ D  I+  D     R + +   +  E + G         
Sbjct: 754 SGAGDRRDEDIREQTVILGEVFDDVILYQDAAQRGRGDGEVMALLREGLAGATRTQHIEE 813

Query: 445 -RIE--AIRTAIEMLNKQDVLVVA 465
            R E  AI  A++ L   D+ +V 
Sbjct: 814 IRGEFIAIDAALDRLKSGDLCLVL 837


>gi|253699158|ref|YP_003020347.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sp. M21]
 gi|259509773|sp|C6DZK7|MURC_GEOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251774008|gb|ACT16589.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M21]
          Length = 461

 Score = 73.4 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 85/433 (19%), Positives = 144/433 (33%), Gaps = 50/433 (11%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           + G    GH     A    A A +VV S+   +D    + ++  ++ V    + L+    
Sbjct: 49  LGGEIFFGH-----AAENVANADVVVISSAVHEDNPEVVEAHLRLIPVIPRAEMLAELMR 103

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             YG      +AV GT GK++  S V  I  + G+    +     ++S   + RL     
Sbjct: 104 MKYG------IAVAGTHGKTTTTSMVATILSKGGIDPTIV-IGGRLNSLGTNARLGQG-- 154

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 ++       + + +                      TN+  DH+D++   +   
Sbjct: 155 ---QFLVAEADESDGSFLLLS---------------PTIAVVTNIDADHLDFYSGIE--- 193

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIH 286
                 F E + K     +      +  V         R  S G   +       V    
Sbjct: 194 -EIKDTFVEFINKIPFYGLAVLCLDNGNVADVLPRVKKRFTSYGLSAQADFRATDVRLSG 252

Query: 287 NKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                    +G    +  F +PG   V NAL A  + + + I    + E       V  R
Sbjct: 253 FSTSFVAHHKGVRLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFGGVGRR 312

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMG 403
           F   G  + G  +  DY H    ++  L   +      R++VVF      R +       
Sbjct: 313 FHLKG-EANGIMVVDDYGHHPTEIKATLGAAKAGFAENRLVVVFQPHRYSRTKELFEDFV 371

Query: 404 KIALDLADIAIVTDDNPRSEDP-EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEML 456
           K A   AD+ I+TD  P  E P E + AE +       G        +R +       +L
Sbjct: 372 K-AFHDADVLILTDIYPAGEAPIEGVTAEALANRVRRHGQRDVTWISDRDKLCEHLERVL 430

Query: 457 NKQDVLVVAGKGH 469
              D+L+  G G+
Sbjct: 431 APGDILLTLGAGN 443


>gi|15789660|ref|NP_279484.1| hypothetical protein VNG0412G [Halobacterium sp. NRC-1]
 gi|169235374|ref|YP_001688574.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Halobacterium salinarum R1]
 gi|10580024|gb|AAG18964.1| dihydropteroate synthase [Halobacterium sp. NRC-1]
 gi|167726440|emb|CAP13225.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Halobacterium salinarum R1]
          Length = 815

 Score = 73.4 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 13/179 (7%)

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +I+ +        PL G+ Q  NA VAA L           +    +    PGRFE +G 
Sbjct: 241 SITGDDWSVATEIPLLGDHQAENAGVAAALARQTAGVDDDAIARGLRSAHWPGRFEVMGA 300

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + +D AH   +   + + +      R++ VFG   D+D G        AL   D
Sbjct: 301 ---DPVVVLDGAHNPGACGAVAETVAEFDYDRLLTVFGAMHDKDHGAM----AAALPTPD 353

Query: 412 IAIVTDDNP-RSEDP---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  P R+ED      +  +   G            A+  AI      D+++VAG
Sbjct: 354 HVWACEPVPDRAEDADVLAAVFEDAGAGTVSVTRAV--ESAVADAIAEATADDLVLVAG 410


>gi|12655906|gb|AAK00649.1|AF227236_1 FolC-FolP fusion protein [Halobacterium salinarum]
          Length = 816

 Score = 73.4 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 13/179 (7%)

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +I+ +        PL G+ Q  NA VAA L           +    +    PGRFE +G 
Sbjct: 241 SITGDDWSVATEIPLLGDHQAENAGVAAALARQTAGVDDDAIARGLRSAHWPGRFEVMGA 300

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + +D AH   +   + + +      R++ VFG   D+D G        AL   D
Sbjct: 301 ---DPVVVLDGAHNPGACGAVAETVAEFDYDRLLTVFGAMHDKDHGAM----AAALPTPD 353

Query: 412 IAIVTDDNP-RSEDP---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  P R+ED      +  +   G            A+  AI      D+++VAG
Sbjct: 354 HVWACEPVPDRAEDADVLAAVFEDAGAGTVSVTRAV--ESAVADAIAEATADDLVLVAG 410


>gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
 gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
          Length = 443

 Score = 73.4 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 110/361 (30%), Gaps = 38/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR        I+A+TG++GK++  S +  I + +GL     G      +        
Sbjct: 94  EFASRFTE---SKIIAITGSNGKTTTTSLMYHIMKEAGLDVGLCGNIGKSFAQLV----- 145

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                         +     +  +E SS  LD  R    K       N+  DH+D ++  
Sbjct: 146 --------------AEDPHEYYVIEISSFQLDDIRFF--KPYIAIILNITPDHLDRYENN 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        E    +   +   DD    E++K       +        K        
Sbjct: 190 FDKYAHSKFRITENQTDKEYFVYNVDDEKINELIKELKIKANKTSFSMKDKKQKAYANEK 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               K                 L G+  V N+L AA     + I   ++   L     V 
Sbjct: 250 IFEIKDN---DNSFLMPIADLGLIGKHNVSNSLAAATAANILKIRKDVIKRSLSDFKSVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   N+    L++++       ++    G D+      +M 
Sbjct: 307 HRLENVLKIGGIEFINDSKATNVNATYFALESMKN-----PVIWIVGGTDKGNDYSELMP 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  I  +  DN       KI       +    E     +A+R A     K D ++
Sbjct: 362 FVKKKVKAIVCLGVDNH------KIIEAFSGVVEKITETKTMKDAVRAAYMYGEKGDTVL 415

Query: 464 V 464
           +
Sbjct: 416 L 416


>gi|15606557|ref|NP_213937.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
 gi|6919927|sp|O67373|MURC_AQUAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2983764|gb|AAC07323.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
          Length = 454

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 155/408 (37%), Gaps = 43/408 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRS--NTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTS 124
           A+ +V SSA    +         N P++     R + L+       G      +AV+G+ 
Sbjct: 66  AQVVVYSSAVKPDNPEIQEAKRRNIPVI----PRGEMLAELFKLKEG------IAVSGSH 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S + +I   +GL    I     +     + +L                      
Sbjct: 116 GKTTTTSMIAEILINAGLEPTVI-IGGRLKRLGTNAKLGRGE------------------ 156

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +  S           ++      TN+ ++H+D+++  +    A    F   +P    A
Sbjct: 157 --LLVSEADESDGSFLKLQPAVAVITNVDKEHLDFYENFERVKEA-FEQFMNSVPFYGFA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           ++  DD    +++K++H               +  K +     + +  +  +GK+     
Sbjct: 214 VVNLDDPTLAQLVKKSHERVITYGINS--PALVRAKNLYLKEGRYEFGVEFKGKELGRIH 271

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   VYNAL A G+ + +G+   ++ + LE+      R E  G   +   +Y DY 
Sbjct: 272 LGIAGIHNVYNALAATGVALELGVSFEVIKKSLEEFRNAERRLELKGY-YKNSPVYDDYG 330

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPR 421
           H    ++ ++ ++R +   + ++V        R         K+  D+ D  IVTD  P 
Sbjct: 331 HHPTEIKAVINSLRDMYPDKNLLVVFQPHRYSRTYYLFEDFVKVLKDI-DKLIVTDIYPA 389

Query: 422 SE-DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           SE +   + AE +    G +   ++ E      E+ ++ DV++  G G
Sbjct: 390 SENNVYGVSAEELARKSGAVFAKDKEEVFEKVREVHDEGDVILFLGAG 437


>gi|73542662|ref|YP_297182.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
 gi|109892727|sp|Q46WZ5|MURC_RALEJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72120075|gb|AAZ62338.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
          Length = 475

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 142/442 (32%), Gaps = 71/442 (16%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKH 113
            GH     A   GA A+VVS+A S  +       +  I VV   R   L+       G  
Sbjct: 55  HGHD---AANIAGANAVVVSTAVSGDNPEVLAARSKRIPVVP--RAVMLAELMRLKQG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I    
Sbjct: 108 ----VAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEA 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S  S                       +  +    TN+  DH+D +    A       
Sbjct: 162 DESDASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFI 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
            F + LP    A++  DD   +E++        R         +                
Sbjct: 202 EFTQRLPFYGIAVLCVDDPNVREILPFVSKPVVRYGFAEDAQIRAVNARAVDGQMHFTVL 261

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +          D +  LPG   V NAL A  +   + +  A +++ L + H V  RF+  
Sbjct: 262 RHLNGHAEPPLDVVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRY 321

Query: 350 G-----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGK 398
           G       +    +  DY H    +   L   R    GR +V+      F    D  +  
Sbjct: 322 GEVATADGTGTFTLVDDYGHHPVEMAATLSAARGAFPGRRLVLAFQPHRFTRTRDCFEDF 381

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE----------IIHGIPGFIEK--GNRI 446
             ++G +     D  ++ +     E P  I A           +   +     +      
Sbjct: 382 VKVLGTV-----DALLLAEVYAAGEAP--IVAADGRALTRALRVAAKVEPVFVEQMEEMP 434

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           +AI  A       DV+V  G G
Sbjct: 435 QAIMNA---ARPGDVVVTMGAG 453


>gi|22297914|ref|NP_681161.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosynechococcus
           elongatus BP-1]
 gi|34222674|sp|Q8DLV5|MURC_THEEB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|22294092|dbj|BAC07923.1| UDP-N-acetylmuramate-alanine ligase [Thermosynechococcus elongatus
           BP-1]
          Length = 475

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 135/415 (32%), Gaps = 55/415 (13%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ SSA      ++ A      PI    +    L          H    +AV GT GK++
Sbjct: 74  VICSSAIRSDNPEYLAAQHLGCPIFHRSDVLAAL---------MHRSQSIAVAGTHGKTT 124

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL                      P+ I   +  ++  +  V      
Sbjct: 125 TSSMIAYLLLQAGLD---------------------PTIIVGGEVAAWQGNARVGQSRYL 163

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L       G  TN+  DH D++ + +       +  ++       A I  
Sbjct: 164 VAEADESDGSLRKFHPHIGVITNIELDHPDHYNSLEEVVATFQQFADQ-------AEIVI 216

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPL 306
             A    +  R H+      S+  Q    +         +       E           +
Sbjct: 217 ACADCPNIRDRLHHPRLLTYSLQRQAAVDYCVDHIQYTAEGTTARVWERGTSLGILQLNV 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NAL    +   +GID A +   L +      RFE  G    G R   DYAH  
Sbjct: 277 LGAHNLQNALAVIAVGRYLGIDFATIAAALLEFRGARRRFEERGQ-VNGIRFIDDYAHHP 335

Query: 367 NSLEMILKNIR-----TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNP 420
           + +   L+  R          RI+ VF      R Q      G+     AD  I TD   
Sbjct: 336 SEIMATLEAARLQVGTQTPWQRIVAVFQPHRYSRTQTLLKAFGQ-CFTAADHVIFTDIYS 394

Query: 421 RSE-DPEKIR-AEIIHGIPGFIEKGNR---IEAIRTAIEM-LNKQDVLVVAGKGH 469
             E DP  I  A++      +    +    +EA++T +   L   D+++  G G+
Sbjct: 395 AGEPDPGTISGADVATCARQYHASVDYCPTLEAVQTRLAHLLQPGDLVIFLGAGN 449


>gi|73542271|ref|YP_296791.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119684|gb|AAZ61947.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 856

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 128/372 (34%), Gaps = 30/372 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+GT+GK++    +  I   SGL    +G T T   + +  R+ T        A + L
Sbjct: 473 VAVSGTNGKTTTVRLITHIMATSGLR---MGMTGTDGVYIRGERIDTGDCSGPRSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR------------DHIDYHQTQQA 225
               V     E +  GL +  L   +      TN+G             + +   ++   
Sbjct: 530 LHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSFISTVEDLAVLKSVIV 589

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A   +            +                            + + +     +
Sbjct: 590 QNVAPHGMAVLNAADPMVVRMADACPGLVTFFAHDPGQPAMATHRAQGKRVVFVDGDHIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
            ++    + +   +          FQV NA+ + G   A+GID  ++   L         
Sbjct: 650 ASEGDNEMRIPLAEIPLTRNGTIGFQVENAMSSIGAAWALGIDWNVIRRGLATFVNDAQT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRP 400
            PGRF     + RG  +  DY H  ++++ +   ++T+ + R +VV    GD RD+  R 
Sbjct: 710 APGRFNV--FDYRGATLIADYGHNPDAIQALCNAVQTMPAKRRLVVISGAGDRRDEDIRK 767

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAI 453
              +I   + D  I+  D   R     ++ A +  G+ G        E      AI T +
Sbjct: 768 Q-TQILGGVFDEVILYQDQCQRGRADGEVLALLREGLQGATRTSAVEEIRGEFVAIDTGL 826

Query: 454 EMLNKQDVLVVA 465
             L   D+ ++ 
Sbjct: 827 SHLQPGDLCLIL 838


>gi|114566361|ref|YP_753515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337296|gb|ABI68144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 453

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 126/397 (31%), Gaps = 49/397 (12%)

Query: 72  VVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSS 128
           VVS    L+            P++                  K      LA++GT+GK++
Sbjct: 73  VVSPGVPLETAPIRQAREQGIPVI---------GEVELAYILKPKAVEFLAISGTNGKTT 123

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  I  ++G ++   G              T    I                 ++ 
Sbjct: 124 TTSLLHYILAQAGRNALAGGNIGIP-------LTTLLDSIS--------------AGTIV 162

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                         +       N+  DH++ H+T + Y  AK ++F +  P +     Y 
Sbjct: 163 VELSSFQLESSSSFRPYICGLLNITPDHLNRHKTMERYIEAKAKIFAQQKPGDYAVFNYE 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D      + + A +   +      + + +    +       +    ++         L G
Sbjct: 223 D----SILREMARSCPAQTFFFSSERELMEGAFINNGVITIKRAGIIQEIARIDEVSLRG 278

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N L A  +    G+    + + L     V  R E +G       +    A    +
Sbjct: 279 KHNLENILAATMMASLAGVSPEDIRQALASFPGVRHRMEELGLYDDVLYVNDSKATNPEA 338

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +   L +       + I++   G ++      + G I   + ++ ++       E  E+I
Sbjct: 339 VMKALDSF-----NQPIILIAGGRNKGSSFSQLAGLIKQKVRELVLL------GEAREEI 387

Query: 429 RAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   I  G     E  +   A+  A E+  K +V+++
Sbjct: 388 KDAVIDAGFRNIHEVEDLQAAVIKAHELARKGEVVLL 424


>gi|302522557|ref|ZP_07274899.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
 gi|302431452|gb|EFL03268.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
          Length = 470

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 142/429 (33%), Gaps = 45/429 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFAS 107
           G     GH     A      A+VVSSA    +           P++   +    L     
Sbjct: 54  GATVHIGHDAAHLAEDT--SAVVVSSAIRADNPELVRARERGIPVVHRSDALAAL----- 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   LA+ GT GK++  S +       GL          + +   +    T   
Sbjct: 107 -MAGTRP---LAIAGTHGKTTTTSMLAVSLTTLGLD-PSYAIGGDLDAPGSNAHHGTGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + + +  +
Sbjct: 162 FVAEADESDRSFHTYA--------------------PEVAVVLNVELDHHANYASIEEIY 201

Query: 228 NAKMRLFEELLPKES-PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            +      +++P  +       + A       R       +     +   + + KV    
Sbjct: 202 ESFETFVGKIVPGGTLVISADHEGARELTRRVRDRVDLRVLTYGSAEDADVRVHKVTPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+S+ GK   F   +PG    +NA+ A    +++G+    +   L     V  R 
Sbjct: 262 LTSEVTVSLNGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
           +  G  + G ++   YAH    +   L+ +R    GRI+VVF      R Q     MG+ 
Sbjct: 322 QLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRTQELGKEMGQ- 379

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIRTAIE-MLNKQ 459
           AL LAD ++V D  P  EDP +     +    G     +       + +  A+  M    
Sbjct: 380 ALALADSSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPG 439

Query: 460 DVLVVAGKG 468
           D+++  G G
Sbjct: 440 DLVLTMGAG 448


>gi|254454584|ref|ZP_05068021.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
 gi|198268990|gb|EDY93260.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
          Length = 471

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 139/416 (33%), Gaps = 51/416 (12%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           AE IV+SSA      +  A  +   P++     R+   L+           ++ +AV GT
Sbjct: 77  AEVIVISSAIKPGNPELDAARQRGLPVV-----RRAEMLAELMRM------KSNIAVAGT 125

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  + +  G  +  +     I ++  + R+                     
Sbjct: 126 HGKTTTTTMVAALLEE-GKFNPTVVNGGIIHAYGSNARVGDGE----------------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA       +RL          TN+  +H+++  T +   +A    F   +P    
Sbjct: 168 WMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGTIENL-HAGFYDFVSNIPFYGL 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFD 301
           A+   DD+  + ++ +  +          Q     +             +         D
Sbjct: 224 AVCCTDDSDVQTLVGKITDRRVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEGLTIVD 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G  I  D
Sbjct: 284 CALPMPGDHNVSNALSAIAVARYLGMKTEEIRTALTAFKGVGRRFTRVG-EVDGVTIIDD 342

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDN 419
           Y H    +  +LK  R  + GRII V      R                 AD+  +T+  
Sbjct: 343 YGHHPTEITAVLKAARQASEGRIIAV--HQPHRYTRLHHHFADFCACFNDADVVAITEVF 400

Query: 420 PRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ED  +       +   I  G        N  + +    E     D++V  G G
Sbjct: 401 AAGEDVIEGATRDDLVAGLIRAGHRDARAITNEADLVALVKEQAKPGDMVVCLGAG 456


>gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 827

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 135/393 (34%), Gaps = 29/393 (7%)

Query: 26  RERKINEVSSDSRHIQ--AGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            E  I    +DSR +      +F AI     DGHL+I Q    G  + VV       D  
Sbjct: 20  SEVFIEHFLTDSRSLMHPQSTLFFAIRTVTGDGHLYIDQLYNHGVRSFVV---KDEFDKL 76

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                +   L V +  + L   A+    +    ++ VTG++GK+ V  F+ Q+   +   
Sbjct: 77  TQQYPDANFLEVRDVIRSLQKIAAEWRREFNIPVVGVTGSNGKTIVKEFLYQLLADTYRV 136

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG-I 202
                     S  + +++L  P  +    +   ++        +       +  R++  I
Sbjct: 137 V--------RSPRSYNSQLGVPLSVLKMTSEDQIAIFEAGISQLG------EMARIEEVI 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G  TN+G  H +   +     + K+ LF      +       +      + +    
Sbjct: 183 KPTIGVITNIGSAHQENFSSIAQKVDEKLLLFG---GCDRIVYNMDEPEIVAGLQRLGLL 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +  R  S       ++++ +    +  ++   V G ++    P   +  + N L      
Sbjct: 240 SRARGWSRKDPKAHLYVRSIETGRDTTKLNFLVLGIEYSIEIPFTDQASIENVLTCVLTT 299

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I I        E   KL  V  R E +  N     I   Y +  NSL++ L   +   + 
Sbjct: 300 IIINPSLIDHPELFSKLEPVEMRLELIEGNKNNLIINDVYNNDINSLKIALDFQQQRATD 359

Query: 383 ---RIIVVFGCGGDRDQGKRPI---MGKIALDL 409
                +++          +RP+   +G++    
Sbjct: 360 ADLEPVLILTEIQQSALNERPLYSRVGELIGKY 392


>gi|227874381|ref|ZP_03992565.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
 gi|227839789|gb|EEJ50235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
          Length = 456

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 118/360 (32%), Gaps = 37/360 (10%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           Y      + AVTGT+GK++  S + +I +     +  +G               T   + 
Sbjct: 102 YQSSKGKLCAVTGTNGKTTTVSLIGEILKSEYSDTHVVGNIGNPF---------TAEALE 152

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             +  +            E SS  L+   +        + TN+  DH+D H+T + Y  A
Sbjct: 153 TEEQSA---------TVCEVSSFQLET--IVDFHPNVSAITNITPDHLDRHKTMKNY-IA 200

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                 E   +E   ++   D   ++  K+       +     +      +K        
Sbjct: 201 VKESIAENQEEEDSIVLNYMDPELRKFGKKRSLKPKVLWFSSEEEPKDTKEKESLFLRGD 260

Query: 290 QVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 E K+          L G+    N L A G+ + +G+    +++  +K   V  R
Sbjct: 261 TFYYKKEDKEEKLFTTKDVHLLGKHNYENILCAVGVGLKMGVPMDKIIKVCKKFKPVEHR 320

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            EFV   S             ++    L+ +        +V+ G G D+     P + + 
Sbjct: 321 IEFVRERSGVKYYNDSKGTNVDAAIQALRAMPG-----PVVLIGGGYDKHVDFDPWVKEF 375

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  + ++       E   +I       G    +   +  EA++      +  D +++
Sbjct: 376 KGRVKYLVLI------GETRNQIAETAKKNGFQNVMFAEDMDEAVKDCAAYADPGDYVLL 429


>gi|163784502|ref|ZP_02179369.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880227|gb|EDP73864.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 412

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 148/433 (34%), Gaps = 58/433 (13%)

Query: 51  GNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTR-KFLSLF 105
           G K     FI  +     GA+ +V SSA    +           P++     R + L+  
Sbjct: 7   GAKV----FIGHSKENVHGADVVVYSSAVKEDNPEIIEAKKLSIPVI----PRGEMLAEL 58

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
               YG      +A+ G+ GK++  S V  I  ++G     +     + ++  + +L   
Sbjct: 59  MRFKYG------IAIAGSHGKTTTTSMVGSILGKTGYDPTVV-IGGKLEAYGSNAKLGRG 111

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             +      S  S                       +     S  N+  +H+ Y++    
Sbjct: 112 DFLVAEADESDGSFLR--------------------LSPTIVSINNIDLEHVGYYRNLDD 151

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A    F   +P      +  DD   K+++ +      +              ++  +
Sbjct: 152 IKKA-FIKFANKVPFYGAVALNIDDKNVKDILPKIEKKVIKFGIENKDADIN-AYELELV 209

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +   +  ++  G+       +PG+  VYNAL A  +   +GI   +V E LE       R
Sbjct: 210 NGTYRFKVNDLGQIH---LSVPGKHNVYNALTAVAIADELGIPFCVVKETLENFKNASRR 266

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
           FE         ++  DYAH  + L+  +   +      RII VF     R      +  +
Sbjct: 267 FEIKYDG--NIKVIDDYAHHPSELKATICAAKDKYPDRRIITVF--QPHRYTRLHSLFNQ 322

Query: 405 IALDL--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            A     +D  I+TD     E P      EK+  +I              +      EM+
Sbjct: 323 FAESFGNSDTVIITDIYSAGEKPIENISAEKLTEKIKEKGKEVYFAKYLSDVENMLKEMI 382

Query: 457 NKQDVLVVAGKGH 469
            + DV+++ G G+
Sbjct: 383 KEGDVVLILGAGN 395


>gi|328885916|emb|CCA59155.1| UDP-N-acetylmuramate--alanine ligase [Streptomyces venezuelae ATCC
           10712]
          Length = 463

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 85/430 (19%), Positives = 143/430 (33%), Gaps = 47/430 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A A+VVSSA      + +       P++   +        AS
Sbjct: 54  GVTVHIGH--AAEHLADDASAVVVSSAIRADNPELARAAELGIPVVHRSD------ALAS 105

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G      +AV GT GK++  S +       GL          ++    +        
Sbjct: 106 LMDGL---RAIAVAGTHGKTTTTSMLAVALTELGLD-PSYAIGGDLAGPGTNALHGDGEV 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S Q                              N+  DH   + +    +
Sbjct: 162 FVAEADESDRSFQKYD--------------------PEVAIVLNVELDHHANYASMDEIY 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            +      ++ P  +  +     A               V     +     + K+     
Sbjct: 202 ESFEAFTAKIRPGGTLVVGEHAGARELARRVADREGLDIVTVGESEDSDARILKIVPNGM 261

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +VT++++G +  F   +PG    +NA  A      +GID A + + L     V  R +
Sbjct: 262 KSEVTVALDGVEHTFTVSVPGRHYAHNAAAALAAGARVGIDPAELAQALTAYTGVGRRLQ 321

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
             G  ++G ++   YAH    +   L+ +R    + R++VVF      R Q     MG  
Sbjct: 322 LKG-EAKGVQVIDSYAHHPTEMTADLEAMRGAAGASRLLVVFQPHLFSRTQELGKEMGD- 379

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNK 458
           AL LAD ++V D  P  EDP      E I A             +   A+   +  M   
Sbjct: 380 ALALADASVVLDIYPAREDPIPGITSELIIAAARQAGADVTAVHD-KAAVPGVVAGMAGP 438

Query: 459 QDVLVVAGKG 468
            D+++  G G
Sbjct: 439 GDLVLTMGAG 448


>gi|320334257|ref|YP_004170968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
 gi|319755546|gb|ADV67303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
          Length = 424

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR       FVA+ G +  G+ F+  A+A GA  ++                    
Sbjct: 23  LTWDSREAGPNVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDAPRA------------ 70

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           + V + +  L  +A      +P  ++ +TG+ GK++  ++         +  F   P
Sbjct: 71  VRVPDAQVALFAWARAERAHNPL-VVGITGSVGKTTAKAYAAAALDAHFMPVFNTMP 126


>gi|91776620|ref|YP_546376.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
 gi|122985406|sp|Q1GZ02|MURC_METFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91710607|gb|ABE50535.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacillus flagellatus
           KT]
          Length = 475

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 138/418 (33%), Gaps = 52/418 (12%)

Query: 69  EAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
             ++ S+      +  A    N PI+     R   L+       G      +A+ GT GK
Sbjct: 67  VVVISSAVKDDNPEVVAARERNIPII----PRALMLAELMRFRQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  I   +G+    +     + +   + RL T   I      S  S        
Sbjct: 117 TTTTSLIASILAEAGMDPTFV-IGGRLEASGSNARLGTGEYIVAEADESDASFLH----- 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  I    TN+  DH+D +             F + LP    A++
Sbjct: 171 ---------------LTPIISVVTNIDADHMDTYGHDFERLKGAFVEFLQRLPFYGMAVV 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFL 303
             DD   + ++ +             +   I    V A + +   T++        FD  
Sbjct: 216 CIDDPNVRAILPQISKQVMPYGF--SEEARIRASNVQAENGRMHFTVTRINGVTTTFDVT 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIY 359
             LPG   V NAL A  +   + +    +++ L +   V  RFE  G     +     + 
Sbjct: 274 LNLPGRHYVLNALAAIAVASELNVPDGAIIKALAEFKGVGRRFERYGEVPARDGGYFTLV 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD 417
            DY H    +  ++   R    GR +V+        + +       K+    AD+ ++T+
Sbjct: 334 DDYGHHPAEMNAVIAAARDAFPGRRLVLAFQPHRYTRTRDCFEDFVKVLSS-ADVVLLTE 392

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E P        +   I   G    +      E  ++ ++M    DV++V G G
Sbjct: 393 VYAAGEAPIVAADGRSLVRAIRVAGKVEPLFVETPQELPQSILDMAQDGDVVIVMGAG 450


>gi|108804334|ref|YP_644271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765577|gb|ABG04459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 454

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 142/443 (32%), Gaps = 40/443 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           +  + DSR ++ G +F A+ G + DG  F P            + A       A      
Sbjct: 27  HGAAVDSRAVRGGELFFALRG-RLDGADFAPD-----------ARARGAVAAVADRPLEV 74

Query: 91  PILVVDNTRKFLSLFASR-LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIG 148
           P LVV++  + L   A   L  +    ++ +TGT GK++    +  I + +G   +   G
Sbjct: 75  PTLVVEDPLRALQELARWSLRREASATVVGITGTVGKTTTKDALATILRSAGRKITATQG 134

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +             P                V  + + A+  G         +   G 
Sbjct: 135 NLNNEIGLPLTVLNAAPD-------------TEVMVLEMGATHPGDIAFLCGIARPHVGV 181

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T +   H+D   + Q     K  L   L    +          +         A  R +
Sbjct: 182 LTAISPVHLDSFGSLQKLAETKGELARSLPEDGAFVSPVGVPEAAVG----GGRAFGRHI 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G +G  +    V       + T+   G+      P+ G   V   L A G  +A+G+ 
Sbjct: 238 TFGDEGASLWASGVEETEEGLRFTVHAFGESAAVRAPVHGTHLVRPLLAATGGALALGVA 297

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRII 385
                  L +L     R + +            Y  +  ++  +L+        +  R++
Sbjct: 298 LEECARGLSRLRRTGLRGDLLRLRDDILLYDDSYNASPAAMAAVLRYGARQASSSGRRLV 357

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            V G   +   G R    + A  LA    V       E+     AE   G    +   + 
Sbjct: 358 AVLGGMFELGPGAREYH-REAGRLAAEVGVDLLVCVGEEAGW-YAEAFDGEK--VLYRDA 413

Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468
            EA R    +L   D ++V  KG
Sbjct: 414 GEAARELPHLLRPGDYVLV--KG 434


>gi|294787657|ref|ZP_06752901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
 gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
          Length = 443

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 125/360 (34%), Gaps = 41/360 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
             + L     + I+A+TG++GK++  S V  +C++SGL +   G        A   R   
Sbjct: 98  ILADLLKNQSDKIIAITGSNGKTTTTSLVGYLCEQSGLDTVVAGNIGMPVLEAWLVRGG- 156

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                          +      +E SS  L+    D +   A +  N+  DH+D +    
Sbjct: 157 ---------------KSADVWVLELSSFQLET--TDYLDADAATCLNISEDHLDRYDDLL 199

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y   K  +F     +   A     D      MKR +           Q    +L  V  
Sbjct: 200 DYARTKDMIFNGKAIQVLNA-----DDAFCCAMKRENRP--IHYFSLSQSIDYYLDSVSG 252

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               Q   +  +        PL G   V N L A  LC ++G+  A +L+++     +P 
Sbjct: 253 SLKHQGADLMPQTDI-----PLQGSHNVANVLAALALCESVGLARADLLKYIRVFKGLPH 307

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E VG  +    I         +    +  +        I +   G  + Q   P+ G 
Sbjct: 308 RVEKVGEKNGVIFIDDSKGTNVGATVAAIVGLPE-----KIWLIAGGMGKGQDFTPLRGV 362

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +  + ++  D P      KI  ++ +     I      EA++ A       D++++
Sbjct: 363 LRGKVGAVFLIGVDAP------KIARDLDNCGVDLIFCDTLPEAVQRAYSQAKSGDIVLL 416


>gi|319953738|ref|YP_004165005.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Cellulophaga
           algicola DSM 14237]
 gi|319422398|gb|ADV49507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           algicola DSM 14237]
          Length = 444

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS+        I+ +TG++GK++    V  I +  GL     G               
Sbjct: 94  EFASKYTD---AKIIGITGSNGKTTTTMLVNHILKSEGLHVGMAGNIGDS---------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  +E SS  LD   +   K      TN+  DH+D +  +
Sbjct: 141 ---------YAKMVAENDFEYYVLEISSFQLD--GIVDFKPHIAILTNISPDHLDRYDYK 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A      E   ++   I  ADD    + +K+       +     +          
Sbjct: 190 YENYIASKFRIAENQTEDDYFIYDADDKDLTDWLKKHPVKAKLMPYSIERTIEEGAFSTN 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                     +++ K       L G+  + N + A+     IGI    +   +       
Sbjct: 250 KDITITTNNDTLKMKT--DSLSLEGKHNLKNTMAASTASKLIGIRKETIRNSVANFQGAE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   N+    L ++RT       V    G D+    + +M 
Sbjct: 308 HRLEKVLKIHHVEYINDSKATNVNATYYALDSVRT-----PTVWIVGGVDKGNDYKSLMP 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  I  +  DN       KI     + +   +E  +  E ++ A +M  + D ++
Sbjct: 363 LVREKVKAIICLGKDNT------KIIEAFGNVVDLIVEAYDMSETVKIAYKMAERGDTVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|146276739|ref|YP_001166898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554980|gb|ABP69593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 481

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 151/457 (33%), Gaps = 44/457 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS DSR ++ G +FVA+  ++ DGH F+ QA+A GA A +VS           +    
Sbjct: 25  TGVSIDSRTLRPGDLFVALK-DQRDGHAFVAQALANGAAAALVSR------IPDGLTDGA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L+        +    ++ VTG+ GK+S    ++   +  G         
Sbjct: 78  PLLLVPDVLEALAALGRAARARSRARVIGVTGSVGKTSTKEMLRAALRGQGTVHAAEASY 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  + +    +        +H  +   L  +     +  
Sbjct: 138 NNHWGV----------PLTLARMPADVDFAVIEIGM----NHPGEIAPLARLARPHLALI 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                              +     E L     AI+ AD   +  +  RA   G   ++ 
Sbjct: 184 TTVAPAHLEAFDSMTAIAEEKAAILEGLEPGGLAILPADLEVTPVLAARASALGVPAMTF 243

Query: 271 GYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G  G     L  +           S   + F F    PG     NAL       A+G+D 
Sbjct: 244 GQSGAADWRLSDIQITPEATIARASHADQTFLFKVLTPGRHFAANALAVLAAAEALGLDL 303

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNS-----------LEMILK 374
            +    L       GR                  +D A  +N                  
Sbjct: 304 TITACDLGLWSPPAGRGTRERIALDPVDEAGFDLIDDAFNANPASVAASLELLAAMAPTD 363

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKIRAEI 432
            +  I++GR I + G   +    +  +   +A    LA IA+V    PR     +   E 
Sbjct: 364 GVGRISTGRRIAILGDMLELGPTEAALHRAVADHPALAGIALVHCVGPR----MRALHEA 419

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           +             E +  A  +++  D+++V G KG
Sbjct: 420 LPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|325266252|ref|ZP_08132931.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella denitrificans ATCC
           33394]
 gi|324982214|gb|EGC17847.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella denitrificans ATCC
           33394]
          Length = 469

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 133/422 (31%), Gaps = 53/422 (12%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGT 123
           GAE +V S+A    +    A +  + P++     R   L+       G      +A+ GT
Sbjct: 64  GAEVVVTSTAIKADNPEVQAALAQHIPVI----PRAMMLAELMRLKDG------IAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S    I   +G+    +     +++   + +L     +      S  S     
Sbjct: 114 HGKTTTTSLTASILGAAGMDPTFV-IGGKLTAAGTNAKLGKGEYLVAEADESDASFLY-- 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +  +    TN+  DH+D +       +     F   +P    
Sbjct: 171 ------------------LSPVITVVTNIDEDHMDTYGQDVQRLHQAFIDFVHRMPFYGK 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG----KD 299
           A +  D  + + ++ +                  +   V     + Q T          +
Sbjct: 213 AFLCVDSEHVRSILPKIKKPFATYAIEDETADI-YATNVRTNGAQMQFTAHTRHTGSVHE 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR-- 357
           FD    LPG   V NAL + G+ +        + + L     V  RF+  G  +      
Sbjct: 272 FDVTLNLPGRHNVLNALASIGVALECKAPIEAIQQGLANFAGVGRRFQSYGNIALPSGGE 331

Query: 358 --IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIA 413
             I  DY H    +   +   R    GR +V+        + K        I    AD  
Sbjct: 332 ALIIDDYGHHPVEMASTIAATRGAYPGRRLVLAFQPHRYTRTKDLFYQFVDILST-ADRV 390

Query: 414 IVTDDNPRSEDPEK------IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++T+     E P        +   +   G+   I   +     +T + +L   DV++  G
Sbjct: 391 VLTEVYAAGEAPIADANGHSLANAVRARGLVEPIYCADVQALPQTLLSILQDGDVVLTMG 450

Query: 467 KG 468
            G
Sbjct: 451 AG 452


>gi|154706319|ref|YP_001425285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii Dugway 5J108-111]
 gi|189082876|sp|A9KER6|MURD_COXBN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154355605|gb|ABS77067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           Dugway 5J108-111]
          Length = 442

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 116/356 (32%), Gaps = 40/356 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 + I+A+TG++GK++V + V  + + +G +    G               TP P 
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIGEPVLEQI-----TPEP- 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                          +  +E SS  L+      ++  A +  N+  DH++ + T Q Y  
Sbjct: 154 --------------DYYVLELSSFQLET--TFSLRSQAATILNISEDHMNRYATLQDYLR 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R     +  +    I   D       +   +       + +         +   + K
Sbjct: 198 AKQR-----IYTDCFIPIVNADEP-----EIWRHLPFNKKPLSFGLNNAADFSLAEHNQK 247

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +    +         L     + NAL A  L  A  I    +L  L     +  R ++
Sbjct: 248 TSIAYQGKILMPIQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFSGIRHRCQW 307

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V                  +    ++++     G++I++ G  G +     P+   +   
Sbjct: 308 VRKYKEIDYYNDSKGTNVGATRAAIESLGQAAKGQLILIAGGQG-KGADFSPL-KDVVKR 365

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                I+       ED   +  + +  I       +  EA++ + +     D++++
Sbjct: 366 YVKQVILI-----GED-APLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL 415


>gi|29653489|ref|NP_819181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161830535|ref|YP_001596099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii RSA 331]
 gi|212213341|ref|YP_002304277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuG_Q212]
 gi|62900583|sp|Q83F20|MURD_COXBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082877|sp|A9NA40|MURD_COXBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711904|sp|B6J2Q5|MURD_COXB2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29540751|gb|AAO89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161762402|gb|ABX78044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 331]
 gi|212011751|gb|ACJ19132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuG_Q212]
          Length = 442

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 116/356 (32%), Gaps = 40/356 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 + I+A+TG++GK++V + V  + + +G +    G               TP P 
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNVSVCGNIGEPVLEQI-----TPEP- 153

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                          +  +E SS  L+      ++  A +  N+  DH++ + T Q Y  
Sbjct: 154 --------------DYYVLELSSFQLET--TFSLRSQAATILNISEDHMNRYATLQDYLR 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R     +  +    I   D       +   +       + +         +   + K
Sbjct: 198 AKQR-----IYTDCFIPIVNADEP-----EIWRHLPFNKKPLSFGLNNAADFSLAEHNQK 247

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +    +         L     + NAL A  L  A  I    +L  L     +  R ++
Sbjct: 248 TSIAYQGKILMPIQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFSGIRHRCQW 307

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V                  +    ++++     G++I++ G  G +     P+   +   
Sbjct: 308 VRKYKEIDYYNDSKGTNVGATRAAIESLGQAAKGQLILIAGGQG-KGADFSPL-KDVVKR 365

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                I+       ED   +  + +  I       +  EA++ + +     D++++
Sbjct: 366 YVKQVILI-----GED-APLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLL 415


>gi|239983058|ref|ZP_04705582.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291454889|ref|ZP_06594279.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291357838|gb|EFE84740.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
          Length = 467

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 125/410 (30%), Gaps = 40/410 (9%)

Query: 70  AIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+VVSSA      +         P++   +    L               +AV GT GK+
Sbjct: 72  AVVVSSAIRPDNPELVRAAELGIPVVHRSDALAALMD---------GTRPIAVAGTHGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +       G           + +   +    T          S  S    T    
Sbjct: 123 TTTSILAVSLAALGRD-PSYAIGGDLDAPGSNALHGTGEIFVAEADESDRSFHKYTPEVA 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              +  LD H                  +    +     F                A   
Sbjct: 182 IVLNVELDHH-----------------ANYASIEEIHESFETFAARIVPGGTLVISADHE 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                ++ +  +                 + +  +     + +VT+ ++G +  F   +P
Sbjct: 225 GARELTRRLAAKGLPGVTVRTYGEAADADVRVVSIVPQGLRSEVTVRIDGAELTFGVSVP 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA+ A    +A+GI +A +   +     V  R +  G  + G ++   YAH  +
Sbjct: 285 GRHYALNAVAALTAAVALGIPAAEMAPAIAAYTGVKRRLQLKG-EAAGVQVIDSYAHHPS 343

Query: 368 SLEMILKNIRTIT--SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +   L+ IR       R++V+F      R Q     MG+ AL LAD ++V +  P  ED
Sbjct: 344 EMTADLEAIRGAVAADARLLVLFQPHLFSRTQELGKEMGQ-ALGLADASVVLEIYPARED 402

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P        I               +R  A      M    D+++  G G
Sbjct: 403 PIPGVTSALIIDAARAAGADVTALADRSAAASVLAGMAKPGDLVLTMGAG 452


>gi|126726619|ref|ZP_01742459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
 gi|126703948|gb|EBA03041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
          Length = 465

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 130/399 (32%), Gaps = 50/399 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
               +  +A   +  P+   ++   F   FA++ +    +   ++A+TG++GKS+ ++ +
Sbjct: 81  PSPNKVIAAAWAAGVPV--DNDIGLFFQSFATQSWDNFDQIPKVIAITGSNGKSTTSALM 138

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I  R G  S   G                   + L                   SS+ 
Sbjct: 139 HHILTRVGRPSQLAGNIGRGVLDIDPAIDGEVVVLEL-------------------SSYQ 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
            D  R   +      FTNL  DH+D H     YF AK RLF E  P  +       D   
Sbjct: 180 TDLAR--SLTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVI---GVDEAE 234

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------DFDFLFPL 306
             ++      G     V        L  +      ++  ++   K       D   +  L
Sbjct: 235 GRMLANQLAEGPVDDRVIRVSVAGKLTGMGWNIFVKKGFLAETRKGKQVASIDLRSVAAL 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NA +       +G+   ++         +P R + VG       I    A   
Sbjct: 295 PGVHNHQNAAMVYAALRTLGLAPKVIEAGFHDFAGLPHRSQPVGEIDGVKYINDSKATNV 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +S  M LK  + I   R IV             P+MG +        I TD  P   D  
Sbjct: 355 DSAAMALKAFKNI---RWIVGGQAKEGGISSLVPLMGDVTRAY---VIGTDPKPFLADLT 408

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +I           +      EA++ A    N  DV+++A
Sbjct: 409 EI---------DHVICNTMDEAVKQAASDANAGDVVLLA 438


>gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 455

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 124/361 (34%), Gaps = 35/361 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS     H   I+A+TG++GK++    +  + +++G ++F  G       F+ D   T
Sbjct: 103 EVASWFCDAH---IIAITGSNGKTTTTELLGHLFRKAGRNTFVCGNVGRP--FSDDTDRT 157

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P  + +                +E SS  LD   +D  +       N+  DH+D +   
Sbjct: 158 GPDDLVV----------------LEVSSFQLD--HIDSFRPDVSILLNITPDHLDRYNQD 199

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A      E        I   DD      + R    G   L +    +      + 
Sbjct: 200 IDRYAASKLRICENQTGVDTFIFNQDDERIARFV-RKRARGPIALGISITEEIRATGFLR 258

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 ++    E         L G   V+N+L AA       + S +V E L     VP
Sbjct: 259 NSDLMLRINDQEENLMPTEKLALRGRHNVFNSLAAAVAARVAEVRSDVVRESLRSFEGVP 318

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   N+L   L++           V    G RD+G      
Sbjct: 319 HRLEIVRDIDGVRYINDSKATNVNALWYALESFTEP-------VVLIAGGRDKGNDYSGL 371

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           K  +     A++T      E  E I+AE+       +   +  EA+R A  +    DV++
Sbjct: 372 KSLVQTRVRALITI----GEAAEAIQAELGEFTADGVTTESLDEAVRLAHLLARPGDVVL 427

Query: 464 V 464
           +
Sbjct: 428 L 428


>gi|188590785|ref|YP_001919870.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43]
 gi|188501066|gb|ACD54202.1| cyanophycin synthetase [Clostridium botulinum E3 str. Alaska E43]
          Length = 872

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 78/193 (40%), Gaps = 8/193 (4%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                + N  +        D    +    ++ + N + A G  + + ID  ++ + +   
Sbjct: 652 NDYIVVVNNHKKYSICSINDVPLSYNGLLKYNLENIMAACGALVGMNIDYCMISKGIMDF 711

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGK 398
           ++      F      G +I +DY H     + +L ++  I   + +I V G  GDR    
Sbjct: 712 NLDNNNGRFNIYEVDGRKIILDYGHNIEGYKAVLSSLNKIKKDKDLIGVIGIPGDRCDDI 771

Query: 399 RPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRT 451
              +GKI  ++ D  I+ +D + R  +  +I + + +G+             + I+A+  
Sbjct: 772 AIEIGKICSEMLDKIIIKEDKDRRGREQGEIASLLKNGVLRENKNSKIHVCLDEIKALEK 831

Query: 452 AIEMLNKQDVLVV 464
           A+ +  K D +VV
Sbjct: 832 ALMISKKGDTIVV 844


>gi|312136986|ref|YP_004004323.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224705|gb|ADP77561.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 476

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/487 (12%), Positives = 148/487 (30%), Gaps = 52/487 (10%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKIN-EVSSDSR-HIQAGWI----FVAIVGNKE 54
           M+L +L      +LI +         +++I   +  ++        I    ++   G   
Sbjct: 1   MRLSELASYVSGKLIGE---------DKEIKVGI-FNTLGDANPNDIVIRHWIDEKG--- 47

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
                +  A  +   A++  +           +   PI++V+      +           
Sbjct: 48  -----VEIAKNKEVSALITQNP-KGNSLEYAKKLKVPIILVNKIELASAFAIKWTIKNFA 101

Query: 115 EN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            N   + +TGT+GKS+    +  I   +G  +F        ++ A+    T   P+    
Sbjct: 102 PNTYRVVITGTNGKSTTTHMIYHILTHAGKKAFT-------NTDAKSEFNTLIDPMVAKL 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  + + ++ +E S       RL        + +      +  +            
Sbjct: 155 LAEKAKKENLEYLVIEVSEVQGWLDRLMKDHAYLMTKSINPNVVVVTNVALDHIGLVNSI 214

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                    +   +    A                L+      F + K          + 
Sbjct: 215 EEVFEETSGAVKALEKGFAVLNY--DNEFTRKMAKLTNKNVKVFFYGKNCPVTFKSGGIY 272

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ +        P   E+ + N L A   C+ + I   ++ + +     +  RF  +   
Sbjct: 273 VNNDLFIKKEELPFKSEYFIQNTLAAISACLCLNIPPDIIKKGILTYKPLKRRFSIL--- 329

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD- 411
            +   I  D+AH  + ++M +K+ + +T  ++ VV    G R +    +  +        
Sbjct: 330 CKKPLIIDDFAHNPDGIKMAIKSAKKLTKNKLWVVCAIRGSRGKIINKLNAESLSKTLKN 389

Query: 412 ----IAIVTD-----DNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                 ++T+     DN      E+ +     +      +        A+   +    K 
Sbjct: 390 IENYEVVITNSDDVVDNLNKVKKEEEKTFLKTLEKYNINYRFHKKLKTALEETLTNCKKD 449

Query: 460 DVLVVAG 466
           D +++ G
Sbjct: 450 DTILLIG 456


>gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M0579]
 gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240149]
 gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis NZ-05/33]
          Length = 445

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 143/418 (34%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|282896417|ref|ZP_06304438.1| Cyanophycin synthetase [Raphidiopsis brookii D9]
 gi|281198705|gb|EFA73585.1| Cyanophycin synthetase [Raphidiopsis brookii D9]
          Length = 860

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S + +   +R  TSG+ I V G  GDR      
Sbjct: 701 QTPGRMNL--FNLGKYHALVDYAHNPASYQALGSFVRNWTSGQRIGVVGGPGDRRDEDFV 758

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    + I   I        +    +  +AI   +
Sbjct: 759 TLGKLAAEIFDYIIVKEDDDTRGRPRGSGSDLIIQGITQTKANCRYESILDETQAINKGL 818

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 819 DMAPDGSLVVIL 830


>gi|239928208|ref|ZP_04685161.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291436539|ref|ZP_06575929.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339434|gb|EFE66390.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
          Length = 462

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 131/411 (31%), Gaps = 43/411 (10%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA      +         P++   +    L      + G  P   +AV GT G
Sbjct: 70  ASCVVVSSAIREDNPELRRAAELGIPVVHRSDALAAL------MDGLRP---IAVAGTHG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +       G           + +   +               S  S       
Sbjct: 121 KTTTTSMLAVSLAALGRR-PSYAIGGDLDAPGSNALHGEGEIFVAEADESDRSFHKYA-- 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                    N+  DH   + + +    +    F   +      +
Sbjct: 178 ------------------PEVAIILNVELDHHANYASMEEIHQS-FETFVGRIVPGGTLV 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I AD   ++E+ +R   A   V     +   + +  V     K +VT+ ++G    F   
Sbjct: 219 ISADHEGARELTRRLDGAVRTVTYGEAEDADVRVLSVVPQGLKSEVTVELDGAPLTFTVS 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG    +NA+ A     A+G+  A +   L     V  R +  G  + G ++   YAH 
Sbjct: 279 VPGRHYAHNAVAALAAGAALGVPPAELAPALAAYTGVKRRLQLKG-EAAGVQVVDSYAHH 337

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +   L+ +R       I+V        R +     MG+ AL LAD ++V D  P  E
Sbjct: 338 PTEMTADLEAMRAAAGDSRILVVFQPHLFSRTRELGKEMGR-ALALADASLVLDVYPARE 396

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DP      E I               +  E       M    D+++  G G
Sbjct: 397 DPIPGVTSELIIEAARAAGADVSAVHDEAEVPEAVAGMAKPGDLVLTMGAG 447


>gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Herminiimonas arsenicoxydans]
 gi|133740378|emb|CAL63429.1| putative Cyanophycin synthetase [Herminiimonas arsenicoxydans]
          Length = 856

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 122/371 (32%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++    +  I Q +       G T+T   + ++ R+ T        A + L
Sbjct: 475 VAVAGTNGKTTTVRLIAHILQANKHRV---GMTTTDGVYIENQRIDTGDCSGPRSARNVL 531

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL------------GRDHIDYHQTQQA 225
               V     E +  G+ +  L   +      TN+              + +   +    
Sbjct: 532 MHPDVDAAVFETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRVIV 591

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A              A + A    S     +  N            + + L     +
Sbjct: 592 QNVAPNGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHRAKGHRVVFLDGTSIV 651

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV---- 341
            ++      +   D          FQ+ NA+ A G   ++ +   +VL  L         
Sbjct: 652 ASEGAFEHRIALADIAITHNGLIGFQIENAMAAIGAAWSLNLSWDIVLNGLRTFENSAAT 711

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF        G  +  DY H  +++E +   +  + + R +VV    GDR       
Sbjct: 712 TPGRFNL--FTHHGATVIADYGHNPDAIEALTHAVEAMPAKRRMVVISGAGDRRDDDLRR 769

Query: 402 MGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIE 454
             +I  D  D  I+ +D   R     ++ A +  G+       +  E      AI TA+ 
Sbjct: 770 QTEILGDAFDDVILYEDQCQRGRADGEVLALLRQGLTKAKRAKSIKEIHGEFLAIDTALA 829

Query: 455 MLNKQDVLVVA 465
            L   D+ ++ 
Sbjct: 830 SLQAGDLCLIL 840


>gi|332663138|ref|YP_004445926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331952|gb|AEE49053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 441

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 111/361 (30%), Gaps = 48/361 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R         + +TG++GK++  + V  +   +G+     G      +        
Sbjct: 99  EFAARYTRSF---TIGITGSNGKTTTTNLVYHLLATAGMDVAMGGNVGKSFARIV----- 150

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                         + +      +E SS  L+  R    +       N+  DH+D +  Q
Sbjct: 151 --------------AERDYPFYVLELSSFQLEGIREY--RPDIAMILNITPDHLDRYDYQ 194

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A      +    E   +  ADD      ++                       + 
Sbjct: 195 LEKYAAAKFNIVKAQQAEDTFLYNADDPNVGGQLEHYPTQA-------------KAVPIS 241

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               +                PL G     NAL A  + + +GI    + E L      P
Sbjct: 242 FQMTEGTRLKVGGYTFDMSTTPLMGRHNYMNALFAVQVALQVGIAPEAIQEGLNTFVNAP 301

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   +S+   L+        R  V    G D+     P++ 
Sbjct: 302 HRLEKVATVEGVEYINDSKATNVDSVYYALEA-----MSRPTVWIVGGQDKGNDYGPLLE 356

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  +  +  DN       KI       +   +E G+ +EA+  A  + +  D ++
Sbjct: 357 FVKAKVKAVVCMGLDN------RKIVQCFSGIVENIVETGSAVEAVTAAARLASPGDTVL 410

Query: 464 V 464
           +
Sbjct: 411 L 411


>gi|194288895|ref|YP_002004802.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222730|emb|CAQ68733.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 856

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 125/371 (33%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+GT+GK++    +  I   SGL    +G T T   + Q  R+ T        A + L
Sbjct: 473 VAVSGTNGKTTTVRLITHIMATSGLR---MGMTGTDGVYIQGERIDTGDCSGPRSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR------------DHIDYHQTQQA 225
               V     E +  GL +  L   +      TN+G             + +   ++   
Sbjct: 530 LHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYINSVEDLAVLKSVIV 589

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A   +            +      S        +            + + +     +
Sbjct: 590 QNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPDQPAMATHRAQGKRVVFVDGAEIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             +    + +   +          FQV NA+ +     A+GID +++   L         
Sbjct: 650 AGEGDAEVRIALAEIPLTRNGTIGFQVENAMSSIAAAWALGIDWSVIRRGLATFVNDAQT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF     + RG  +  DY H  +++  +   I +I + R +VV    GDR       
Sbjct: 710 APGRFNV--FDYRGATLIADYGHNPDAILALCNAIESIPAKRRVVVISGAGDRRDDDIRR 767

Query: 402 MGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIE 454
             +I   + D  ++  D   R     ++ A +  G+ G        E      AI TA+ 
Sbjct: 768 QTQILGGVFDEVVLYQDQCQRGRADGEVLALLREGLQGAQRASQVEEIRGEFLAIDTALS 827

Query: 455 MLNKQDVLVVA 465
            L   D+ ++ 
Sbjct: 828 HLQPGDLCLIL 838


>gi|157092717|gb|ABV22528.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 870

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|76881227|gb|ABA56282.1| cyanophycin synthetase [Nostoc ellipsosporum]
 gi|157092715|gb|ABV22527.1| cyanophycin synthetase [synthetic construct]
 gi|157092741|gb|ABV22544.1| cyanophycin synthetase [Nostoc ellipsosporum NE1]
          Length = 901

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|17231371|ref|NP_487919.1| cyanophycin synthetase [Nostoc sp. PCC 7120]
 gi|20137726|sp|P58572|CPHA_ANASP RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|17133013|dbj|BAB75578.1| cyanophycin synthetase [Nostoc sp. PCC 7120]
          Length = 901

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|157092726|gb|ABV22534.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 862

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|162449936|ref|YP_001612303.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
 gi|189082502|sp|A9FI59|MURC_SORC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161160518|emb|CAN91823.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
          Length = 469

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 141/434 (32%), Gaps = 55/434 (12%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFAS 107
           G + D GH        +G + +V SSA   ++          TP++      + L+    
Sbjct: 51  GVRIDIGHR-AENV--RGVDVVVYSSAIRPENPELTEARALGTPVIGRA---EMLAELMR 104

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             YG      +A+ G+ GK++  S V  + + +GL    +     +++   + RL     
Sbjct: 105 VKYG------VAIAGSHGKTTTTSLVATVLRAAGLDPTVV-VGGKMAALGTNARLGAGDL 157

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           +      S  S                       +       TN+  +H+D++ T +   
Sbjct: 158 LVAEADESDGSFLR--------------------LTPTIAVVTNIDPEHLDHYGTHERIK 197

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +A    F   +P    A++  D  + ++++ R                     +   +  
Sbjct: 198 DA-FVEFAARVPFYGLAVLCLDHPHVQDLLPRIPRRHVTYGVSPQSDYSARGIQFRGLET 256

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                         F   +PG   V N L    +   + +   +  + L     V  RF 
Sbjct: 257 SFN-AYRRGEPLGGFTVKMPGAHNVLNCLATIAVADELEVPLDVTKQALATFGGVARRFT 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKI- 405
            VG +  G  +  DY H    +   +   R    G    VV      R    R +  +  
Sbjct: 316 VVG-SIGGVTMIDDYGHHPAEIRATIDAARRAFPGEDHRVVVAFQPHRHTRTRDLFDEFT 374

Query: 406 -ALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            A + AD+ +VTD     E P          + IR    H      +K +  EA+     
Sbjct: 375 RAFNQADVLLVTDIYAAGEPPIPGVTAERLVQSIREHGHHDARFIADKTDLPEALEK--- 431

Query: 455 MLNKQDVLVVAGKG 468
           +    DV++  G G
Sbjct: 432 IARPGDVVIALGAG 445


>gi|157092735|gb|ABV22540.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 855

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|157092732|gb|ABV22538.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 856

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|157092729|gb|ABV22536.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 856

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|157092720|gb|ABV22530.1| truncated cyanophycin synthetase [synthetic construct]
 gi|157092723|gb|ABV22532.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 866

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|297203112|ref|ZP_06920509.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
 gi|197717453|gb|EDY61487.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
          Length = 463

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 147/430 (34%), Gaps = 47/430 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A  +VVSSA      + +       P++   +        AS
Sbjct: 54  GATVHIGH--AAEHLAADATCVVVSSAIRADNPELARAAELGIPVVHRSD------ALAS 105

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   +AV GT GK++  S +       GL          + +   +        
Sbjct: 106 LMDGLRP---IAVAGTHGKTTTTSMLAVSLSELGLR-PSYAIGGDLDAPGSNALHGEGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + +     
Sbjct: 162 FVAEADESDRSFHKYA--------------------PEVAIVLNVELDHHANYASMDEI- 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIH 286
                 F + + K    ++ AD   ++E+  R   +G RV++ G  +   + +  V    
Sbjct: 201 YESFETFVDRIAKGGTLVVNADHEGARELTWRVTASGVRVVTYGDAEDADVRVLSVAPQG 260

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            K +VT+ ++G+   F   +PG    +NA+ A    +A+G+ +  +   L     V  R 
Sbjct: 261 LKSEVTVLLDGRQLTFTVSVPGRHYAHNAVAALAAGVALGVPAEDLAPALAAYTGVKRRL 320

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGK 404
           +  G  + G ++   YAH    +   L+ +R       I+V        R Q     MG+
Sbjct: 321 QLKG-EAAGVQVIDSYAHHPTEMTADLEAMRAAAGDARILVVFQPHLFSRTQELGKEMGE 379

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            AL LAD ++V +  P  EDP      E I               ++ +       M   
Sbjct: 380 -ALALADGSLVLEIYPAREDPIPGVTSELIIDAARAAGADVTPVHDKADVPEVVAGMAKA 438

Query: 459 QDVLVVAGKG 468
            D+++  G G
Sbjct: 439 GDLVLTMGAG 448


>gi|269838015|ref|YP_003320243.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
 gi|269787278|gb|ACZ39421.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
          Length = 473

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 128/408 (31%), Gaps = 43/408 (10%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +  ++  S  + +A      PI+     R  L         +     LAV GT GKS+
Sbjct: 78  VVVTAAAPESNPEVAAARARGIPIIK----RAAL--LGRLCDER---VCLAVAGTHGKST 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +  +      +G                          +         +++        
Sbjct: 129 TSGMLALALVHAGEDPS--------------------FAVGAVVKELGTNARPGAGPFFV 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A +   D   L  +       TN+  DH D   ++++   A  R    + P  +  +  A
Sbjct: 169 AEADEYDYSFLW-LHPDVAVVTNIEHDHPDLFPSRESVLEAFTRFVSGMRPDGTLVVS-A 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   ++++ R  +   RV++ G                   +  +  G+       +PG
Sbjct: 227 DDPGCRDLLARLGDRRPRVVTFGSDPNADWSIVRDEETGSGDLVRAPGGRTLRLRLAVPG 286

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NAL A     A G+    +L  L     V  RFE  G    G  +  DYAH    
Sbjct: 287 WHNRLNALAALAAGEAAGVAPERLLPGLAAFGGVGRRFEVRGQAR-GVTVVDDYAHHPTE 345

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG---KIALDLADIAIVTDDNPRSE- 423
           +   ++  R    + R+  VF         +   M      AL LAD  ++       E 
Sbjct: 346 IRATIEAARERYPAARLWAVFQP---HTYSRTREMLDDFAAALSLADYVVLAPIYAARET 402

Query: 424 -DPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D     A+I   + G   +   +   A           DV+++ G G
Sbjct: 403 NDLGVSSADIAGRMAGRPVVVVESPAAAGEVVAADAEAGDVVLILGAG 450


>gi|119773493|ref|YP_926233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           amazonensis SB2B]
 gi|119765993|gb|ABL98563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           amazonensis SB2B]
          Length = 443

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 137/398 (34%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A++I++S   ++         +  I V+ +         +R        +LA+TG++GKS
Sbjct: 71  AQSIIISPGIAVDTPEVRAAMDMGIEVIGDV-----ELFAREIQDMAPCVLAITGSNGKS 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +    +    G                   + L    + L         +
Sbjct: 126 TVTTLVGEMARADNKAVAVGGNIGVP-------------ALELLGKGAEL-------FVL 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  IAG+  N+  DH+D +   +AY  AK+RL+ +           
Sbjct: 166 ELSSFQLET--THSLHCIAGTCLNISEDHMDRYTDLEAYRQAKLRLYPQ----------- 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPL 306
                   V  R   A             + + ++               +  +     L
Sbjct: 213 ----SKLSVYNRDDAATIPDEPRNTVSFGLGVPELDDWGLMDGKIYHGASEIMNLLDVAL 268

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N L A  LC A GI    +++  ++   +  R E V +++    +    A   
Sbjct: 269 IGSHNHANLLAAMALCEAAGISREAMVKVAKEFTGLAHRCELVASHNSIAWVNDSKATNV 328

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L  +        I++   G  +     P+ G +   ++ +  +        D +
Sbjct: 329 GATVAALNGLAEHLGD--IILIAGGDGKGADFEPLRGALGA-VSHLITL------GRDGD 379

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI   ++    G I+     EA+  A  + N  D++++
Sbjct: 380 KIA--VLK--EGAIKVATMAEAVEKAKALANPGDIVLL 413


>gi|254479325|ref|ZP_05092664.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034745|gb|EEB75480.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 535

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 126/363 (34%), Gaps = 20/363 (5%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            ++  +     + +TG+ GK+S   F+  +                 S         TP 
Sbjct: 176 RKIRNRKDLITIGITGSYGKTSTKHFITAVLSE------------KFSVLMTPESYNTPM 223

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +          +  +    + A   G  +  +       G  T++G  H++   T +  
Sbjct: 224 GVTKVIRNELKDTHQIFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENV 283

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
              K  L E  LP++  A++  D+ Y +   ++         +     +   L     I+
Sbjct: 284 AKTKFELVEG-LPEDGIAVLNGDNYYCRTFGEKFAVRKLFYGTESPIERKYFLWAENIIN 342

Query: 287 NKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +Q +      +D        PL G   V N L A  + +A+G++   +   L ++  VP
Sbjct: 343 TRQGLKFDAVTEDGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVP 402

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRP 400
            R + + T      I   +       +  L  ++ + + R I+V       G+++  +  
Sbjct: 403 HRLQLISTPHGVTVIDDAFNSNPEGAKEALACLKEMDAKRRIIVTPGMVELGEKEYEENK 462

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +GK   ++ D AI+     RS    +   E            N  EA +    +L   D
Sbjct: 463 NLGKNIAEVCDYAILVGKK-RSRPIFEGLKEASFPEEKVFVVANLDEATKVLQNLLQPGD 521

Query: 461 VLV 463
           V++
Sbjct: 522 VVL 524


>gi|148257416|ref|YP_001242001.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
 gi|166222959|sp|A5EPK1|MURC_BRASB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146409589|gb|ABQ38095.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 467

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 145/424 (34%), Gaps = 57/424 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  AGADVVVVSTAIKRDNPELMTARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G+    I     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDAGGIDPTVI-NGGIINAYGTNARLGAGDWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A  +A  R F E +P    
Sbjct: 168 -------------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRAFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  D    + ++ +  +       V  Q     +    A  + +   +  + K     
Sbjct: 214 AVMCIDHPVVQALVGKIEDRRIITYGVNPQADVRLVDLSPANGSSRFKVVFRDRKSGATH 273

Query: 304 F------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+PG     NA  A  +   +GI    + + +     V  RF   G    G  
Sbjct: 274 EISDITLPMPGRHNASNATAAIAVAHELGISDEAIRKAIAGFGGVKRRFTRTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DY H    +  +LK  R  TSG++I V      R    + +  +       AD  IV
Sbjct: 333 IIDDYGHHPVEIAAVLKAARESTSGKVIAVV--QPHRYTRLQSLFEEFCTCFNDADAVIV 390

Query: 416 TDDNPRSEDP-EKIRAE------IIHGIPGFIEKGNRIEAIRTA---IEMLNKQDVLVVA 465
            D  P  E P E I  +        HG    +      +A   A     +    D++V  
Sbjct: 391 ADVYPAGEAPIEGIDRDHFVLGLRAHGHRDVLPLP---QAADLAGIVKRLAKSGDLVVCL 447

Query: 466 GKGH 469
           G G+
Sbjct: 448 GAGN 451


>gi|319411051|emb|CBY91451.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           WUE 2594]
          Length = 445

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 143/418 (34%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEYEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|218780973|ref|YP_002432291.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
 gi|254766048|sp|B8FBS0|MURD_DESAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218762357|gb|ACL04823.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 450

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 74/401 (18%), Positives = 120/401 (29%), Gaps = 52/401 (12%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ IV+S      +    A      P++  V          ASR        I+AVTGT+
Sbjct: 69  ADLIVISPGVPHTIPVLEAAREKGVPVIGEV--------ELASRFIQAP---IIAVTGTN 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++V S + ++ + SG+S+F  G                                    
Sbjct: 118 GKTTVTSLIGEMMEASGISAFVGGNIGNPLVNYAKGE------------------DKAQV 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V  E SS  LD   ++         TN+  DH+D +   + Y  A              A
Sbjct: 160 VVAEISSFQLDT--IESFAPKVALLTNVTEDHMDRYDGMEGYA-ASKARVFMNQTGADFA 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+   D +S                   + +      + A                    
Sbjct: 217 ILNGCDKWS---RAMCGGIKASQWFFTGREEAEAGIAMNAGAMDFFTGAQKHWSLSLKKM 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L GE    NA  AA    A G     +   ++    +P R EFV             A 
Sbjct: 274 TLSGEHNKENAAAAALAAYAAGASVEGIQGAIDAFKGLPHRLEFVREVMDVKYYDDSKAT 333

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSE 423
             +++   L+            V    G RD+G     +  +    A    VT       
Sbjct: 334 NVDAVLRALEGFNAP-------VHLIMGGRDKGGHFRDLKDMVEQKAARLYVTG------ 380

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   I    + G    ++ G   +A+  A       +V+V+
Sbjct: 381 EAAGIITSALSGSVEVVQAGTIEKAVEFAKRAARPGEVVVL 421


>gi|257066693|ref|YP_003152949.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
 gi|256798573|gb|ACV29228.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 121/376 (32%), Gaps = 43/376 (11%)

Query: 94  VVDNTRKFLSLFASR---LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           VV   R+   + +             I+A TGT+GK+S  S +  I   SG  +  +G  
Sbjct: 73  VVKKLREKYEIISDIELSFRLFPEAKIIATTGTNGKTSTTSMISHILNESGRKAISVGNI 132

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                +      +      L                   SS  L  H +   K      T
Sbjct: 133 GEGILWQMYENPSAIFSCEL-------------------SSFQL--HDVSTYKPHIACIT 171

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DHID+H +   Y N+K+ +  +    +   I + +D    +             S 
Sbjct: 172 NITEDHIDWHGSFDDYINSKLNICRKQDSGDFLVINH-EDPILVDHKADFRAKVYEFSSK 230

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +  +LK        Q   I +   D      + G     N + A   C   G+   
Sbjct: 231 EEVDRGAYLKGSSIFFKDQGKNIKLMDVD---DLSIIGRHNYENLMAAILACFIYGVSIE 287

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++   +    +  R EFV                 +S    +++       + IV+   
Sbjct: 288 DIIRGSKSFKSIEHRLEFVTDIRGIRVYNDSKGTNVDSSVKAIQSFD-----KPIVIIAG 342

Query: 391 GGDRDQGKRPIMGKIALDLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           G D++    P + +       + I+  T D        K+ +        + +  +  +A
Sbjct: 343 GYDKNIDYSPYIKEFKKHGKLMVIIGQTTD--------KLASLCEAYKVNYKKAKDMEDA 394

Query: 449 IRTAIEMLNKQDVLVV 464
           ++ + + L + D+ ++
Sbjct: 395 VKISFDNLEEGDIFLL 410


>gi|297588764|ref|ZP_06947407.1| possible tetrahydrofolate synthase [Finegoldia magna ATCC 53516]
 gi|297574137|gb|EFH92858.1| possible tetrahydrofolate synthase [Finegoldia magna ATCC 53516]
          Length = 415

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 126/381 (33%), Gaps = 39/381 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--------------- 156
           +    I+ V GT+GK S ++F+ Q  +  G  +        I+ +               
Sbjct: 36  EKSFKIIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFM 95

Query: 157 -----------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                        D +++T   I L  A+ Y + Q   +V +E    G    RLD     
Sbjct: 96  RIFEIIKDTIEENDIKVSTFEFITL-CAIYYFAEQKCEYVVLEVGMGG----RLDATNAT 150

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  ++          Q+   N    +  E                 + V+        
Sbjct: 151 DETLLSVIT--KIGLDHQEYLGNTLEEIAYEKACIMKQNGRCVVYDQQESVLDVFREVAE 208

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +  Y   F   K +           S + K+      L G +Q+YNA +A      +
Sbjct: 209 ERNNKLYICDFDEAKNIEINATYN----SFDWKNLHIETRLVGRYQLYNAQLALSAIDVL 264

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
             +  L  E + K                   +  D  H ++ ++ +  +I ++   + I
Sbjct: 265 RDELDLSDEDIIKGFKNAYIPARFDVIRHNPTVIYDGGHNADGVKALKSSIESVFGDKKI 324

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            VF  G  +D+     +  I  +       T D+PR+   E ++ +I       + K N 
Sbjct: 325 -VFVYGVLKDKDYDDEIKLIHENAKAFVTFTPDSPRALKAEDLKKQIEAYSDNVVAKSNV 383

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A+  AIE     DV+++ G
Sbjct: 384 NDAVDYAIEHFK-DDVIIIFG 403


>gi|295835883|ref|ZP_06822816.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295825750|gb|EFG64450.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 149/429 (34%), Gaps = 45/429 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH     A      A+VVSSA      +         P++   +    L     
Sbjct: 54  GATVHLGHDAAHLAEDT--SAVVVSSAIREDNPELVRARELGIPVVHRSDALAAL----- 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   LAV GT GK++  S +       GL          + +   +    T   
Sbjct: 107 -MTGTRP---LAVAGTHGKTTTTSMLAVSLTTLGLD-PSYAIGGDLDAPGSNAHHGTGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + + +  +
Sbjct: 162 FVAEADESDRSFHTYA--------------------PEVAVVLNVELDHHANYASIEEIY 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIH 286
            +      +++P  +  I    +   +   +    A   +++ G  +   + ++KV    
Sbjct: 202 ESFETFVGKIVPGGTLVISADHEGARELTRRVRERADLTIVTYGSAEDADVRVRKVSPRG 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT++++GK   F   +PG    +NA+ A    +++G+    +   L     V  R 
Sbjct: 262 LTSEVTVAIDGKLLTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRL 321

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
           +  G  + G ++   YAH    +   L+ +R    GRI+VVF      R Q     MG+ 
Sbjct: 322 QLKG-EAAGVQVVDSYAHHPTEMAADLEAMRGAVEGRILVVFQPHLFSRTQELGKEMGQ- 379

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIRTAIE-MLNKQ 459
           AL LAD ++V D  P  EDP +     +    G     +       + +  A+  M    
Sbjct: 380 ALALADSSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPG 439

Query: 460 DVLVVAGKG 468
           D+++  G G
Sbjct: 440 DLVLTMGAG 448


>gi|75908035|ref|YP_322331.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413]
 gi|8134380|sp|O86109|CPHA_ANAVT RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|3393028|emb|CAA06440.1| cyanophycin synthetase [Anabaena variabilis ATCC 29413]
 gi|75701760|gb|ABA21436.1| Cyanophycin synthetase [Anabaena variabilis ATCC 29413]
          Length = 901

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR      I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASALITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPANGLVVIL 854


>gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
 gi|122063234|sp|Q1IKG8|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 453

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/399 (16%), Positives = 131/399 (32%), Gaps = 51/399 (12%)

Query: 70  AIVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            IV+S    +         +   P++            A++     P +++A+TG++GK+
Sbjct: 71  LIVISPGVPFDQPQLEQARKQGIPVIG-------EIELAAQFV---PGHVIAITGSNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    I Q  G  +   G   T +                        +   T   +
Sbjct: 121 TTTSLCGDILQSGGKKTLVGGNIGTPAI------------------SFAQLANDDTWSVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   ++  +    +  N+  DH+D H T + Y  A      E   +   AI+ 
Sbjct: 163 EISSFQLET--IERFRPEIAAILNITPDHLDRHGTFEKYA-AAKERIFENQREHDFAILN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           AD+    E+ KR  +                +++        +    +       L    
Sbjct: 220 ADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFRDPKGEREIMPVADMLLK--- 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A  + +A  +    + + + +   V  R E+  T           A   +
Sbjct: 277 GAHNVENVLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLEYTATVKGVDYYNDSKATNVD 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADIAIVTDDNPRSEDPE 426
           +    L++           V    G +D+G    ++  +  + A                
Sbjct: 337 ATIKALESFSK-------GVHLILGGKDKGSPYTVLNDLLHERAKTVYTI-----GAAAA 384

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           KI AE+  G+   +       A++ A +   K DV+++A
Sbjct: 385 KIEAEV-KGVE-VVHAETLENAVKLASQKAVKGDVVLLA 421


>gi|113866800|ref|YP_725289.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525576|emb|CAJ91921.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 856

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 125/371 (33%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+GT+GK++    +  I   SGL    +G T T   + Q  R+ T        A + L
Sbjct: 473 VAVSGTNGKTTTVRLITHIMATSGLR---MGMTGTDGVYIQGERIDTGDCSGPRSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR------------DHIDYHQTQQA 225
               V     E +  GL +  L   +      TN+G             + +   ++   
Sbjct: 530 LHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYINSVEDLAVLKSVIV 589

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A   +            +      S        N            + + +     +
Sbjct: 590 QNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPNQPAMATHRAQGKRVVFVDGADIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
            ++    + +   +          FQV NA+ +     A+GID   +   L         
Sbjct: 650 ASEGDTEVRIAVAEVPLTRNGTIGFQVDNAMSSIAAAWALGIDWPTIRRGLATFVNDAQT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF     + RG  +  DY H  +++  +   + TI + R +VV    GDR       
Sbjct: 710 APGRFNV--FDYRGATLIADYGHNPDAILALCNAVETIPAKRRMVVISGAGDRRDDDIRR 767

Query: 402 MGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIE 454
             +I   + D  I+  D   R     ++ A +  G+ G    G   E      AI TA+ 
Sbjct: 768 QTQILGGVFDEVILYQDQCQRGRADGEVLALLREGLQGAQRAGQVEEIRGEFLAIDTALS 827

Query: 455 MLNKQDVLVVA 465
            L   D+ +V 
Sbjct: 828 HLQPGDLCLVL 838


>gi|323137892|ref|ZP_08072967.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242]
 gi|322396895|gb|EFX99421.1| UDP-N-acetylmuramate/alanine ligase [Methylocystis sp. ATCC 49242]
          Length = 469

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 145/439 (33%), Gaps = 57/439 (12%)

Query: 50  VGNKEDGHLFI-PQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF 105
            G       FI   A   G A  +VVS+A    +          + VV   R+   L+  
Sbjct: 51  KGASV----FIGHDAKNLGDAAVVVVSTAIKRDNPELAAAREKRLPVV---RRAEMLAEL 103

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                    +  +A+ GT GK++  S V  +    GL    I     I+++  + RL   
Sbjct: 104 MRL------KQCVAIAGTHGKTTTTSLVATLLDAGGLDPTVI-NGGIINAYGTNARLGAG 156

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             + +    S                          +       TN+  +H+D+  T  A
Sbjct: 157 EWMVVEADESD--------------------GTFLKLPADVAIVTNIDPEHLDHFHTFDA 196

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A  R F E LP    A++  D    +E++ R  +          Q     L      
Sbjct: 197 IKEA-FRNFIENLPFYGFAVMCLDHPTVQELVGRIEDRRVITYGENPQADVRLLDVNLEG 255

Query: 286 HNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
              +   +  + K     +      P+PG     NA  A  +   +G+    + + L   
Sbjct: 256 GVSRFNVLLRDRKTAQATYLENLVLPMPGHHNALNATAAITVAYQLGLSPDQIRKALAGF 315

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  RF   G +  G +++ DY H    +  +L+  R  T G+++ V      R    +
Sbjct: 316 GGVKRRFTRTG-DWNGVQVFDDYGHHPVEIAAVLRAARASTKGKVVAV--MQPHRFTRLQ 372

Query: 400 PIMG--KIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIR 450
            +        + AD+ I+ D  P  E P      + +   I   G    +   +      
Sbjct: 373 SLFDGFSTCFNDADVVIIADVYPAGEQPIQGVDRDALVNAIRAHGHRRAVGLPSPEVLPA 432

Query: 451 TAIEMLNKQDVLVVAGKGH 469
              E++   D +V  G G+
Sbjct: 433 MVREIVAPGDYVVCLGAGN 451


>gi|219670366|ref|YP_002460801.1| FolC bifunctional protein [Desulfitobacterium hafniense DCB-2]
 gi|219540626|gb|ACL22365.1| FolC bifunctional protein [Desulfitobacterium hafniense DCB-2]
          Length = 459

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E +   S   ++ +D AH  +    + K +      R+++  G  GD++   R  
Sbjct: 321 WPGRLELL---SLKPKVLIDGAHNVDGAHALAKALNIFQRQRLVLCLGMLGDKE---REK 374

Query: 402 MGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +  I + LAD  I+T  N PRS + E +   +       +       A+  A   L+K+D
Sbjct: 375 VVDILVPLADEVIITKPNSPRSGNWEYLHELVKEKGKPVLTIEEPRLAVEEAFRRLDKED 434

Query: 461 VLVVAG 466
           +L V G
Sbjct: 435 MLCVTG 440


>gi|89895933|ref|YP_519420.1| hypothetical protein DSY3187 [Desulfitobacterium hafniense Y51]
 gi|89335381|dbj|BAE84976.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 439

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E +   S   ++ +D AH  +    + K +      R+++  G  GD++   R  
Sbjct: 301 WPGRLELL---SLKPKVLIDGAHNVDGAHALAKALNIFQRQRLVLCLGMLGDKE---REK 354

Query: 402 MGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +  I + LAD  I+T  N PRS + E +   +       +       A+  A   L+K+D
Sbjct: 355 VVDILVPLADEVIITKPNSPRSGNWEYLHELVKEKGKPVLTIEEPRLAVEEAFRRLDKED 414

Query: 461 VLVVAG 466
           +L V G
Sbjct: 415 MLCVTG 420


>gi|289522908|ref|ZP_06439762.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503932|gb|EFD25096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 120/354 (33%), Gaps = 42/354 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ VTGT+GKS+ ++ +  +  + G  +   G                         L+
Sbjct: 101 KIIGVTGTNGKSTTSALIAHLLSKLGYKTALAGNFG--------------------FPLA 140

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             + Q +  ++ E SS  L         +     TN+  DH+D+H + +AY  +K R+ +
Sbjct: 141 DFAKQDLDFIAAEISSFQLHWANRFSCHI--AVVTNICPDHLDWHGSFKAYVESKKRIID 198

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L           D      +++     G  +            ++   I +  +  +  
Sbjct: 199 LLSSDGYCVYQNKDRE----LLRTNGCRGAVLRWASDCSTGKCEEQDEIILHDSEAYLRT 254

Query: 296 EGKDF----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           E +D       + PL G   V N  +A      +G D+      L     +P R E VG 
Sbjct: 255 ESRDIKLFSYSILPLYGRHNVENTAMAMTAVYYLGCDAERTSHLLSDFKNLPHRCEKVGE 314

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 I         S    + +I     G  +++ G  G  +Q     + K     A 
Sbjct: 315 KKGITFIDDSKGTNVASSITAITSI----PGTKVIILGGKGKGEQY--DELAKAVKAHAR 368

Query: 412 IAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A++        +   I   +   G   +I   +  EA+  A  M    D++++
Sbjct: 369 GAVL-----LGAEKGAISEALESAGFRNYILVSSMEEAVYCAFNMACPGDIVLL 417


>gi|34499797|ref|NP_904012.1| UDP-N-acetylmuramate--L-alanine ligase [Chromobacterium violaceum
           ATCC 12472]
 gi|44888169|sp|Q7NQ00|MURC_CHRVO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34105647|gb|AAQ62001.1| UDP-N-acetylmuramate-alanine ligase [Chromobacterium violaceum ATCC
           12472]
          Length = 464

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 74/433 (17%), Positives = 136/433 (31%), Gaps = 58/433 (13%)

Query: 56  GHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   ++      GA+ +V S+A    +       +  I V+      L+       G  
Sbjct: 56  GHDATYVE-----GADVVVTSTAVKADNPEVLAARDKRIPVIPRAL-MLAELMRFKQG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ GT GK++  S    +   +G   +F IG    +++   + +L     +    
Sbjct: 108 ----IAIAGTHGKTTTTSLTASVLGAAGLDPTFVIG--GKLTAAGTNAKLGLGEFLVAEA 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S  S                       +  +    TN+  DH+D +            
Sbjct: 162 DESDASFLH--------------------LTPVMAVVTNIDADHMDTYDHSFDKLKQAFV 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F + +P    A++  DD   +E+ +R                +    +  A      V 
Sbjct: 202 DFLQRMPFYGRAVLCVDDPNVREIRERVTKPVTTYGLDDSADIYAENVRAAAGQMHFDVV 261

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
           +       F  +  LPG   V NAL A  + +  G     + + L +   V  RF+  G 
Sbjct: 262 VKNGAITRFPLVLNLPGRHNVLNALSAIAIGLECGASIEAIQKGLSEFAGVGRRFQRYGE 321

Query: 351 ---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
               +     +  DY H    +   L  +R     R  ++      R    R +      
Sbjct: 322 VKAQDGGSFTLIDDYGHHPVEMAATLAAVRGAFPDRR-LLLAFQPHRYTRTRDLFEDFVK 380

Query: 408 DLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM 455
            L+  D  ++++     E P        +   +  G         +  +  +AI  A   
Sbjct: 381 VLSGVDALLLSEVYAAGEAPIVAADGRALARAVRVGGKVEPLFVEDIADMPQAILDA--- 437

Query: 456 LNKQDVLVVAGKG 468
               DV+V  G G
Sbjct: 438 ARDGDVVVTMGAG 450


>gi|91791720|ref|YP_561371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
 gi|91713722|gb|ABE53648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
          Length = 440

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/394 (17%), Positives = 129/394 (32%), Gaps = 56/394 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+S   ++         +  I V+ +      LFA  +  K P  ++ +TG++GK++V +
Sbjct: 71  VISPGIAIDTPEVRAAMDMGIEVIGDVE----LFARAIADKKP-CVIGITGSNGKTTVTT 125

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V ++   +GL     G   T               + L        +  V +  +E SS
Sbjct: 126 LVYEMLLAAGLKVAVGGNIGTP-------------ALDL-------LAMDVDYYVLELSS 165

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+      +  IA +  N+  DH+D +    AY NAK+RL+               D 
Sbjct: 166 FQLET--TYSLNCIAATCLNISEDHMDRYSDLTAYRNAKLRLY---------------DQ 208

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEF 310
               +             +      + +    A           +    +     L G  
Sbjct: 209 SRFIMYNLDDELTYPHEPMNQNHFGLGVPDGDAWGLGDGKIYHGDSDIINLIDVALIGSH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A G++   ++   +    +  R E V        I    A    +  
Sbjct: 269 NHGNLLAAMALVHACGVEKEPMVTVAKTFSGLSHRCELVAVKQGVSYINDSKATNVGATV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L+ + T      + +   G  +    RP+       L+++  +           K+  
Sbjct: 329 AALEGLSTHLG--EVYLIAGGDGKGADFRPL----TQALSNVVQLITLGRDGHKLAKL-- 380

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 PG IE     EA+  A EM    D++++
Sbjct: 381 -----KPGAIEVATMAEAVAKAAEMAYSGDIVLL 409


>gi|302344213|ref|YP_003808742.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
 gi|301640826|gb|ADK86148.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
          Length = 458

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 58/269 (21%), Positives = 91/269 (33%), Gaps = 12/269 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  +    TN+ R+H+D++ + QA   A    F   +P    AII  DD     ++ R  
Sbjct: 171 LSPVVVVVTNIDREHMDHYGSDQALDEA-FVEFMNKVPFYGAAIICLDDPRVAALIPRVR 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                    G             +        +          PLPG   V N L A  +
Sbjct: 230 KRVITYGQSGQADFEAREVSHQGMRTSFS-LFAQGQNLGRVQVPLPGRHNVLNTLAALAV 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+   + +        V  R E  G ++ G  +  DYAH    +   L+  R    
Sbjct: 289 AKELGVAMPVAMSACAGFGGVGRRMEQKGQSAAGALVVDDYAHHPTEIRATLQAARDCWP 348

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE--DP----EKIRAEII 433
            + +VV        +  R +  + A     AD  ++ D    SE  DP    EK+   I 
Sbjct: 349 DKRLVVCFQPHRYSRT-RDLFEEFATAFYVADELLLLDIYAASEKKDPAVSAEKLAEAIR 407

Query: 434 H-GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             G       G +  A     +ML   DV
Sbjct: 408 AHGHRRVEYVGGQEAARERLEKMLGPDDV 436


>gi|188994489|ref|YP_001928741.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis ATCC 33277]
 gi|226722944|sp|B2RIE9|MURD_PORG3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|188594169|dbj|BAG33144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 450

 Score = 71.9 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 65/404 (16%), Positives = 134/404 (33%), Gaps = 51/404 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILAV 120
           AI++ +   ++  S  I    P++     R+ ++          FA R        ++ +
Sbjct: 62  AIILEAKEIIK--SPGIPDTAPVI-----RQAVAKEIGIVSEIEFAGRYTDAF---MVCI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++   ++     ++GL     G                            ++  
Sbjct: 112 TGSNGKTTTTMWLYHTLCKAGLDVGLAGNVG-------------------FSLARQVAYD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              +  +E SS  LD   +   +       N+  DH+D +  +   +             
Sbjct: 153 PHPYYVIELSSFQLD--NMYDFRANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQP 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E   I + DD +    +         +              +   +    + ++      
Sbjct: 211 EDCFIYWEDDPFISRWVAEHPPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFVMD 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + L  L G    +NA+  A    A+ I +  + E L+    VP R E +        I  
Sbjct: 271 EELLALSGMHNRHNAMATAIAAKAMDIKNEAIREALQDFKNVPHRLEKIARVKGVDYIND 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   NS    L++++T    R+I++ G   D+      I   +   +  +  +  DN 
Sbjct: 331 SKATNVNSTWYALESMKT----RVILILGGT-DKGNDYTDIENLVLSKVDGLIFLGIDN- 384

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E   K        I    +  +  EA+  A +M +K D +++
Sbjct: 385 --EKLHKFFD---GKISRIADACSMHEAVSLAYKMASKGDTVLL 423


>gi|293603445|ref|ZP_06685870.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
 gi|292818147|gb|EFF77203.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
          Length = 468

 Score = 71.9 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 135/423 (31%), Gaps = 52/423 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA AIV S+A +  +          I VV      L+           +  +AV GT GK
Sbjct: 64  GAAAIVTSTAVAGDNPEVIAARAARIPVVPRAL-MLAELMRL------KRGIAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    G           ++S   + RL     I +    S  S        
Sbjct: 117 TTTTSLVASVLAA-GDLDPTFVIGGRLNSAGANARLGQGDYIVVEADESDASFLN----- 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A   +    F + LP    A++
Sbjct: 171 ---------------LLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301
            +DDA  +E+M     +         +   +   +V     + +  +    +D       
Sbjct: 216 CSDDANVREIM--PFVSRPITTYGLNEDAQVRAYEVQPSGTRMRFNVQRTHRDTLLPPLQ 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG------ 355
               LPG   V NAL A  +   +G+    + E L     V  RF   G           
Sbjct: 274 VELNLPGLHNVRNALAAIAVATELGVSDDAIRESLAAFKGVGRRFTQTGEFPVPASHGGG 333

Query: 356 -GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADI 412
              +  DY H    +   L   R     R IV+        + +       ++    AD 
Sbjct: 334 TFTVIDDYGHHPVEMAATLSAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGT-ADA 392

Query: 413 AIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++T+     E P        +   +   G    +   +  E  +  ++ +   DV++V 
Sbjct: 393 VLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDFVRDGDVVIVM 452

Query: 466 GKG 468
           G G
Sbjct: 453 GAG 455


>gi|282899544|ref|ZP_06307508.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195423|gb|EFA70356.1| cphA (Cyanophycin synthetase) [Cylindrospermopsis raciborskii
           CS-505]
          Length = 860

 Score = 71.9 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S + +   +R  TSG+ I V G  GDR      
Sbjct: 701 QTPGRMNL--FNLGKYHALVDYAHNPASYQALGSFVRNWTSGQRIGVVGGPGDRRDEDFV 758

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    + I   I        +    +  +AI   +
Sbjct: 759 TLGKLAAEIFDYIIVKEDDDTRGRPRGSGSDLIIQGITQTKVNCRYESILDETQAINKGL 818

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 819 DMAPDGSLVVIL 830


>gi|85373187|ref|YP_457249.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter litoralis
           HTCC2594]
 gi|122545203|sp|Q2NCY9|MURC_ERYLH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84786270|gb|ABC62452.1| UDP-N-acetylmuramate-alanine ligase [Erythrobacter litoralis
           HTCC2594]
          Length = 474

 Score = 71.9 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 92/434 (21%), Positives = 140/434 (32%), Gaps = 58/434 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH   P+ I   A  +V S+A    +          I VV   R+   L+          
Sbjct: 59  GH--APENIEN-AAVVVTSTAVKRTNPEVASALENRIPVV---RRAEMLAELMRL----- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++ +AV GT GK++  S +  +    G     +     I  +  + RL           
Sbjct: 108 -KSTVAVAGTHGKTTTTSMIAALL-DCGDIDPTVINGGIIEQYGSNARLGDSE------- 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VEA        RLDG        TN+  +H+D++        A    
Sbjct: 159 ----------WMVVEADESDGSFLRLDGTI---AVVTNIDPEHLDHYGDFDGVKRA-FLD 204

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P    AI+  D    + V+ +  +          Q     +             I
Sbjct: 205 FIHNVPFYGAAILCIDHPEVQAVIGQVRDRRVMTYGFSLQADICGVNIRPEGGGNVFDVI 264

Query: 294 SVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +  + D        P+PG   V NAL A  + I +G    ++    E    V  RF  
Sbjct: 265 VRQRGEEDRRIADVHLPMPGRHNVQNALAAIAVSIEMGCSDEVIQRGFESFGGVRRRFTK 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMG 403
           VG    G  I  DY H    +  +L   +         GR+I V      R    R +M 
Sbjct: 325 VG-EVGGATIIDDYGHHPVEIAAVLGAAQEAVSSSDKGGRVIAV--AQPHRYTRLRDLMD 381

Query: 404 --KIALDLADIAIVTDDNPRSEDPEK-IRAEII------HGIPGFIEKGNRIEAIRTAIE 454
             +   + AD   VT      EDP   I AE +       G        +     RT   
Sbjct: 382 DFQSCFNDADAVYVTPVYEAGEDPIDGIDAEALVAGLKSRGHRHAATIADPQALARTLAG 441

Query: 455 MLNKQDVLVVAGKG 468
            + + DV+V  G G
Sbjct: 442 EIEEGDVVVCLGAG 455


>gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Lens]
 gi|62900487|sp|Q5WTI5|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Lens]
          Length = 447

 Score = 71.9 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/385 (16%), Positives = 123/385 (31%), Gaps = 39/385 (10%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFA---SRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           S  +  +TP+L  ++ R+  +L       L  +    ++A+TGT+GKS+V + V ++ + 
Sbjct: 72  SPGLALDTPVL--ESARQAGALIYGDIECLAREISAPVIAITGTNGKSTVTTLVGEMAKA 129

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G      G   T      D+                          +E SS  LD    
Sbjct: 130 AGFRVAVAGNIGTPVLDMLDDE------------------HHYDLWVLELSSFQLDL--T 169

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +  +  +  N+  DH+D H T +AY  AK R++                 +       
Sbjct: 170 YSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRIYRGAKAVLFNREDVYTVPHQSCQADI 229

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              +  +          I  +    +    +  + VE      +                
Sbjct: 230 KCISFGKDAPSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACAL---- 285

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A GI    +L  L+    +P R ++V      G I         +    +  I   
Sbjct: 286 --AEAAGISMQHILNVLKTFPGLPHRCQWVREVDGVGWINDSKGTNIGATISAINGIGGS 343

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G+  +V   GG         + +   +     ++       ED +KI + +   +P  
Sbjct: 344 MQGK--IVLIAGGQGKGADFQELAQPVSEFVRSIVLI-----GEDADKIESALAKVVP-V 395

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +   A+  A       DV+++
Sbjct: 396 VRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|302389258|ref|YP_003825079.1| FolC bifunctional protein [Thermosediminibacter oceani DSM 16646]
 gi|302199886|gb|ADL07456.1| FolC bifunctional protein [Thermosediminibacter oceani DSM 16646]
          Length = 434

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRP 400
            PGR E +G       + +D AH  + + ++   I     G R+I+V G   D+D  K  
Sbjct: 296 WPGRLEIMGR---NPDVLIDGAHNPSGVGVLKSAILKYFPGKRVILVIGILKDKDYLK-- 350

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIRTAIEM 455
            M +  + +AD  + T  D+PR+ +P ++   I    +  +P    +    EAI TA E+
Sbjct: 351 -MLEEIIPVADAVVATRPDSPRALEPNELEGSIKSLNLEKMPEIYVREEVEEAIDTAYEI 409

Query: 456 LNKQDVLVVAG 466
               DV+V AG
Sbjct: 410 AGASDVIVFAG 420


>gi|28211898|ref|NP_782842.1| dihydrofolate synthase [Clostridium tetani E88]
 gi|28204341|gb|AAO36779.1| folylpolyglutamate synthase [Clostridium tetani E88]
          Length = 431

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 90/244 (36%), Gaps = 12/244 (4%)

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                   ++ +  P I+Y  +  + +V+++        L    +    H+       + 
Sbjct: 179 EIASEKAGIIKENVPVILYPQEEGAYKVIEKTCMEKDSKLIYIDENSIYHIPNEDFNKSY 238

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPG 344
           Q + I     ++     L G  Q  N  VA      +           +         PG
Sbjct: 239 QFLQIKTNKDEYKVQLSLLGSHQRMNCAVAIYAIEQLMQIGIKIKKEDILRGLSNVQWPG 298

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG 403
           R E + T      + +D AH  + +  + ++I+      ++I++ G   D+D  K   M 
Sbjct: 299 RLEILKT---NPLVVIDGAHNLDGITKLKESIKQYFRYNKLILIIGILTDKDIQK---MV 352

Query: 404 KIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +    +A+  I VT ++ R +  +++   I +         +  EA   A+   ++ D++
Sbjct: 353 RTITPIANKVIAVTPNSYRGKTSQELIKTIENYNKNCEALEDYKEAYVKALAYCDEDDMI 412

Query: 463 VVAG 466
           ++ G
Sbjct: 413 LICG 416


>gi|56807399|ref|ZP_00365374.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Streptococcus
           pyogenes M49 591]
          Length = 243

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 12/250 (4%)

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
             T+        ++LTTP  + L   ++   + G+TH+ +E SS      R+ G+    G
Sbjct: 5   MNTTLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVDRVYGLTFDVG 64

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
            F N+  DHI      +          + LL + S A++          +          
Sbjct: 65  VFLNISPDHIGPI---EHPTFEDYFYHKRLLMENSRAVVINSGMDHFSFLADQVADQ--- 118

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                   +  L       ++     +       +   L G F   NA+ A   C+ +G 
Sbjct: 119 ----EHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGA 174

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A + + + K   VPGR E +   +   +++VDYAH  +SLE +L  +    +G+++++
Sbjct: 175 SLADIQKGIAK-TRVPGRMEVLTMTNH-AKVFVDYAHNGDSLEKLLSVVEEHQTGKLMLI 232

Query: 388 FGCGGDRDQG 397
            G  G++ + 
Sbjct: 233 LGAPGNKGES 242


>gi|302557646|ref|ZP_07309988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
 gi|302475264|gb|EFL38357.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
          Length = 462

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 131/411 (31%), Gaps = 43/411 (10%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA      +         P++   +    L      + G  P   +AV GT G
Sbjct: 70  ASCVVVSSAIREDNPELVRAAELGIPVVHRSDALAAL------MDGLRP---IAVAGTHG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +       G           + +   +               S  S       
Sbjct: 121 KTTTTSMLAVSLTALG-REPSYAIGGDLDAPGSNALHGGGEIFVAEADESDRSFHKYA-- 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                    N+  DH   + + +    +       ++P  +  I
Sbjct: 178 ------------------PEVAIILNVELDHHANYASMEEIHQSFETFVGRVVPGGTLVI 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             AD   ++E+ +R   +   V         + +  V     + +VT+ ++G    F   
Sbjct: 220 S-ADHEGARELTRRLDGSVRTVTYGESADADVRVLSVVPQGLRSEVTVELDGAPLTFTVS 278

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG    +NA+ A     A+GI +A +   L     V  R +  G  + G ++   YAH 
Sbjct: 279 VPGRHYAHNAVAALAAGAALGIPAAELAPALAAYTGVKRRLQLKG-EAAGVQVVDSYAHH 337

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +   L+ +R       I+V        R +     MG+    LAD ++V D  P  E
Sbjct: 338 PTEMTADLEAMRAAAGDARILVVFQPHLFSRTRELGKEMGQSLS-LADASVVLDIYPARE 396

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DP      E I               ++ E       M    D+++  G G
Sbjct: 397 DPIPGVTSELIIEAARAAGADVTAVHDQAEIPEVVAGMAKPGDLVLTMGAG 447


>gi|20808896|ref|NP_624067.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517554|gb|AAM25671.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 508

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 126/363 (34%), Gaps = 20/363 (5%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            ++  +     + +TG+ GK+S   F+  +                 S         TP 
Sbjct: 149 RKIRNRKDLITIGITGSYGKTSTKHFITAVLSE------------KFSVLMTPESYNTPM 196

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +          +  +    + A   G  +  +       G  T++G  H++   T +  
Sbjct: 197 GVTKVIRNELKDTHQIFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENV 256

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
              K  L E  LP++  A++  D+ Y +   ++         +     +   L     I+
Sbjct: 257 AKTKFELVEG-LPEDGIAVLNGDNYYCRTFGEKFAVRKLFYGTESPIERKYFLWAENIIN 315

Query: 287 NKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +Q +      +D        PL G   V N L A  + +A+G++   +   L ++  VP
Sbjct: 316 TRQGLKFDAVTEDGMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVP 375

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRP 400
            R + + T      I   +       +  L  ++ + + R I+V       G+++  +  
Sbjct: 376 HRLQLISTPHGVTVIDDAFNSNPEGAKEALACLKEMDAKRRIIVTPGMVELGEKEYEENK 435

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +GK   ++ D AI+     RS    +   E            N  EA +    +L   D
Sbjct: 436 NLGKNIAEVCDYAILVGKK-RSRPIFEGLKEASFPEEKVFVVANLDEATKVLQTLLQPGD 494

Query: 461 VLV 463
           V++
Sbjct: 495 VVL 497


>gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
 gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
          Length = 449

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 94/277 (33%), Gaps = 14/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K    +  N+  DH++ H T +AY  AK R+FE +  +    +  
Sbjct: 159 EVSSFQLE--FIKNFKPKTAAILNITPDHLERHHTMEAYVQAKARIFENMNFENCILL-- 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D      +    N    V     Q    +   +           +           + 
Sbjct: 215 NADDKYTNELTEMANKHTNVCLFSIQKNIDNGAFLDGEELVISYKGNKINICNKNELQIK 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A+ L    GI    +   L++   +P R EFV             A  ++
Sbjct: 275 GKQNYANALAASFLAFFSGISLEAIRAALKEFKGLPHRIEFVRKFKNINYYNDSKATNTD 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        + +++   G D+       M K+     ++ ++ +   R E    
Sbjct: 335 ASIKGMEAFD-----KPVILIAGGHDKGIPLSEYMKKVKEHTKELILIGEATERFEKVA- 388

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I  G+       +  +A+  A +     D++++
Sbjct: 389 ----IKEGVSNITRAKDMEDAVYKATKFAEAGDIIIL 421


>gi|294632042|ref|ZP_06710602.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
 gi|292835375|gb|EFF93724.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
          Length = 463

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 84/430 (19%), Positives = 140/430 (32%), Gaps = 46/430 (10%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFA 106
            G     GH    + +A  A  +VVSSA      +         P++   +    L+   
Sbjct: 53  QGATVHIGH--AAEHLADDASCVVVSSAIRQDNPELVRAAELGIPVVHRSD---ALAALM 107

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + L        +AV GT GK++  S +       GL +        + +   +    T  
Sbjct: 108 AGLRP------IAVAGTHGKTTTTSMLAVSLTALGL-NPSYAIGGDLDAPGSNALHGTGE 160

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                   S  S                                N+  DH   + +    
Sbjct: 161 IFVAEADESDRSFHKYA--------------------PEVAIVLNVELDHHANYASMDEI 200

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                  F   +      +I AD   ++E+ +R   +   V         + +  V    
Sbjct: 201 -YESFETFAGKIVPGGTLVISADHDGARELTRRLAGSVRTVTYGESADADVRVLSVVPQG 259

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            K +VT+ ++G +  F   +PG    +NA+ A    +A+GI +A +   L     V  R 
Sbjct: 260 LKSEVTVLLDGAELTFAVSVPGRHYAHNAVAALAAGVALGIPAAELAPALAAYAGVKRRL 319

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGK 404
           +  G  + G ++   YAH    +   L+ +R       I+V        R Q     MG+
Sbjct: 320 QLKG-EAAGVQVIDSYAHHPTEMSADLEAMRAAAGDARILVVFQPHLFSRTQELGKEMGQ 378

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            AL LAD + V D  P  EDP      E I               ++ E       M   
Sbjct: 379 -ALTLADASAVLDIYPAREDPVPGVTSELIIEAARAAGADVTAVHDKAEVPDVVAGMAKA 437

Query: 459 QDVLVVAGKG 468
            D+++  G G
Sbjct: 438 GDLVLTMGAG 447


>gi|305664536|ref|YP_003860823.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
 gi|88708553|gb|EAR00789.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
          Length = 444

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        I+ +TG++GK++       I +  GL     G               
Sbjct: 94  EFAARYID---ATIIGITGSNGKTTTTMLTNHIFKEEGLDVGMAGNIGDS---------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  +E SS  LD   ++  +      TN+  DH+D ++ +
Sbjct: 141 ---------FAKMVAENDHDNYVLEISSFQLD--GINDFRPHIAIITNITPDHLDRYEYK 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A      E   KE   I  ADD    E + +       +                
Sbjct: 190 FENYVASKFRIAENQSKEDYLIYDADDEVIVEWLNKHPVKSILMPFSIKNELTQGAY--L 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   T +   +       L G+  + N + AA     IGI    +   +       
Sbjct: 248 KNDRIIIKTNNETLEMMTSTLALEGKHNLKNTMAAATAAKLIGIRKETIRASIANFQGAE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A     +      + ++++  + +V G   D+    + +M 
Sbjct: 308 HRLEKVLKIQHVQYINDSKATN---VNATYYALDSMSAPTVWIVGGV--DKGNDYKELMP 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  I  + +DN       KI     + +   +E     EA++ A ++  + D ++
Sbjct: 363 LVREKVKAIICLGNDNS------KIVDAFGNVVDLMVETYAMEEAVKVAYKIAERGDTVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|34540387|ref|NP_904866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis W83]
 gi|62900688|sp|Q7MWM5|MURD_PORGI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|34396700|gb|AAQ65765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis W83]
          Length = 450

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 134/404 (33%), Gaps = 51/404 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILAV 120
           AI++ +   ++  S  I    PI+     R+ ++          FA R        ++ +
Sbjct: 62  AIILEAKEIIK--SPGIPDTAPII-----RQAVAKEIGIVSEIEFAGRYTDAF---MVCI 111

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++   ++     ++GL     G                            ++  
Sbjct: 112 TGSNGKTTTTMWLYHTLCKAGLDVGLAGNVG-------------------FSLARQVAYD 152

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              +  +E SS  LD   +   +       N+  DH+D +  +   +             
Sbjct: 153 PHPYYVIELSSFQLD--NMYDFRANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQP 210

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E   I + DD +    +         +              +   +    + ++      
Sbjct: 211 EDCFIYWEDDPFISRWVAEHPPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFVMD 270

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + L  L G    +NA+  A    A+ I +  + E L+    VP R E +        I  
Sbjct: 271 EELLALSGMHNRHNAMATAIAAKAMDIKNEAIREALQDFKNVPHRLEKIARVKGVDYIND 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   NS    L++++T    R+I++ G   D+      I   +   +  +  +  DN 
Sbjct: 331 SKATNVNSTWYALESMKT----RVILILGGT-DKGNDYTDIENLVLSKVDGLIFLGIDN- 384

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E   K        I    +  +  EA+  A +M +K D +++
Sbjct: 385 --EKLHKFFD---GKISRIADACSMHEAVSLAYKMASKGDTVLL 423


>gi|212550833|ref|YP_002309150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549071|dbj|BAG83739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 452

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 116/355 (32%), Gaps = 42/355 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++ A+ +  I + +G     +G                     LA  
Sbjct: 109 KAKTICITGSNGKTTTATLIYYILKYAGFDVALVGNVGK----------------SLAMQ 152

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           ++        +  +E SS  LD   +   K       N+  DH+D ++ +   +      
Sbjct: 153 VAEK---DCNYYVIELSSFQLD--GMYHFKADIAVLLNITSDHLDCYEYEIQNYINSKMR 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   K    I ++DD     ++        +     Y         V A      + +
Sbjct: 208 IIQNQTKNDIFIYWSDD-----LVIAREIQKMKPTVTFYPFSEQKQVGVKAYTENGNIKV 262

Query: 294 SVEGKDFDFLFPLPG---EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                 F           +  +YN+L A  +   +G+   ++         +  R E V 
Sbjct: 263 ETANGMFSMPQKYLVLRGKHNLYNSLAATAVAKLLGVKDEMLEHSFLNFKAIEHRMEKVA 322

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  I    A   NS   +L+++RT      I++   G D+      I G +     
Sbjct: 323 HIKGVDYINDSKATNVNSCFYVLQSMRT-----PIILILGGVDKGNDYSEIEGLVREKCR 377

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
            +  +  DN +         +   G    I    +  +AI+ A ++  + D +++
Sbjct: 378 ALIFLGVDNSK-------LHDFFDGKVNVIYDVDSMKKAIQYAYKIAQEGDTVLL 425


>gi|254796835|ref|YP_003081672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
 gi|254590075|gb|ACT69437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
          Length = 326

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L+  D    I +  +      +  I+    S D   +  G IFV       D H  I  A
Sbjct: 2   LLTADLIRSILKAELICEYQAKIDISRSKFSMDYEKVGKGEIFVTADAKNHDTHHLIETA 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA AI+     +            PI+ VD+  + +   A+ L   +   ++ +TG+
Sbjct: 62  YLNGALAIITKKDTACPKVP------IPIIKVDDPLRAMEKLAAILIRNYQPIVIGITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSF 145
           SGK+   + +  + +  G + +
Sbjct: 116 SGKTLTKNLIVTLLKNYGKTCY 137


>gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Paris]
 gi|62900489|sp|Q5X1S4|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Paris]
          Length = 447

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 118/351 (33%), Gaps = 34/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++A+TGT+GKS+V + V ++ + +G      G   T      D+             
Sbjct: 104 SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPVLDMLDDE------------ 151

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS  LD      +  +  +  N+  DH+D H T +AY  AK R+
Sbjct: 152 ------HHYDLWVLELSSFQLDL--TYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +              +      V  ++     + +S G     +    +    N   +  
Sbjct: 204 YRGAKAVLF------NREDVYTVPHQSCQTDIKCISFGKDAPSMGNWGLIEQENTTYLAK 257

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +E         + G     NAL A  L  A GI    +L  L+    +P R ++V    
Sbjct: 258 GMERLLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREVD 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G I         +    +  I     G+  +V   GG         + +   +     
Sbjct: 318 GVGWINDSKGTNIGATISAINGIGGSMQGK--IVLIAGGQGKGADFQELAQPVSEFVRSI 375

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++       ED +KI + +   +P  +   +   A+  A       DV+++
Sbjct: 376 VLI-----GEDADKIESALAKVVP-VVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|62900494|sp|Q5ZSA3|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 447

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 109/351 (31%), Gaps = 34/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++A+TGT+GKS+V + V ++ + +G      G   T      D+             
Sbjct: 104 SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPVLDMLDDE------------ 151

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS  LD      +  +  +  N+  DH+D H T +AY  AK R+
Sbjct: 152 ------HHYDLWVLELSSFQLDL--TYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +                 +          +  +          I  +    +    +  +
Sbjct: 204 YRGAKAVLFNREDVYTVPHQSCQADIKCISFGKDAPSMGNWGLIEQENTTYLAKGMERLL 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            VE      +                 L  A GI    +L  L+    +P R ++V    
Sbjct: 264 PVESILIKGVHNWMNALAACA------LAEAAGISMQHILNVLKTFPGLPHRCQWVREVD 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G I         +    +  I     G+  +V   GG         + +   +     
Sbjct: 318 GVGWINDSKGTNIGATISAINGIGGSMQGK--IVLIAGGQGKGADFQELAQPVSEFVRSI 375

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++       ED +KI + +   +P  +   +   A+  A       DV+++
Sbjct: 376 VLI-----GEDADKIESALAKVVP-VVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|147677148|ref|YP_001211363.1| folylpolyglutamate synthase [Pelotomaculum thermopropionicum SI]
 gi|146273245|dbj|BAF58994.1| folylpolyglutamate synthase [Pelotomaculum thermopropionicum SI]
          Length = 430

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E +        + +D AH       + + +     GR +V+     D D+ +  +
Sbjct: 296 WPGRLEVMRRKPL---VIIDGAHNYEGARSLRRALADHFPGREMVLVIGMLD-DKERFKV 351

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           + ++A   A   +VT  D+PR+   +++       +     +    EA+  A+ +   +D
Sbjct: 352 VAELA-PAARAVVVTRPDSPRAAKWQQLAVAARRHVREVYLEELIEEAVEKALSLAGPED 410

Query: 461 VLVVAG 466
           ++   G
Sbjct: 411 LVCFTG 416


>gi|237756370|ref|ZP_04584917.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691467|gb|EEP60528.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 456

 Score = 71.5 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 135/411 (32%), Gaps = 53/411 (12%)

Query: 70  AIVVSSAYSLQDFSATIRS--NTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGK 126
            +V SSA    +           P +     R + L+      YG      +A+ G+ GK
Sbjct: 68  VVVYSSAVKPDNPEMIKAKQLGIPTI----PRGEMLAELMRFKYG------IAIAGSHGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +  ++G     +     + ++  + +L     +      S  S        
Sbjct: 118 TTTTSMVGTVLGKTGFDPTVV-IGGKLEAYGSNAKLGRGEFLVTESDESDGSFLK----- 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +     S  N+  +HI +++  +    A    F   +P    A +
Sbjct: 172 ---------------LTPTIVSINNIDLEHIGFYKDLEDIKKA-FVTFANKVPFYGAAAV 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   K ++        +               +   + + +  ++  G+       +
Sbjct: 216 NIDDENVKSILPYIERKVIKFGFSEDADI--RAYDLRLENGRYKFKVNDFGEIH---LSV 270

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   VYNAL    +C  + +   ++ E LE       RFE   +N     I  DYAH  
Sbjct: 271 PGIHNVYNALATIAICNELNVPFCVIKESLENFKNAKRRFEIKYSN--DIVIIDDYAHHP 328

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE 423
             L+  L   R      RII VF     R      +  + A      DI IVT+     E
Sbjct: 329 TELKATLSAARDYFKDRRIIAVF--QPHRYSRLNVLFEEFAKAFDIPDITIVTEVYSAGE 386

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +P      EK+  +I           N  EA      ++   DV++  G G
Sbjct: 387 NPIENVSGEKLAKKIKEYRKNVYYVSNLEEAENLLKNIIQIGDVILTLGAG 437


>gi|209963945|ref|YP_002296860.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum centenum SW]
 gi|226706326|sp|B6IRG1|MURC_RHOCS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|209957411|gb|ACI98047.1| UDP-N-acetylmuramate--alanine ligase [Rhodospirillum centenum SW]
          Length = 482

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 85/428 (19%), Positives = 139/428 (32%), Gaps = 51/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   G  A+VV S+    D    + +   ++ V    + L+           +
Sbjct: 59  GHR----AENLGEAAVVVISSAVRTDNPEVVAARAALVPVVRRAEMLAELMRL------K 108

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  +   +G     I     I++   + RL +         + 
Sbjct: 109 WSVAVAGTHGKTTTTSMVAALLDGAGFDPTII-NGGIINALGTNARLGSGD-----WMVV 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  T   + A+                   TN+  +H+D++ T +    A    F 
Sbjct: 163 EADESDGTFTKLPAT---------------IAVVTNMDPEHLDFYGTFEKEREA-FDRFV 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E +P    A +  D    + ++ RA                    +         V +S 
Sbjct: 207 ENIPFYGFAALCTDHPEVQALVARADRRIVTYGFNPQADVRAVNVEGDHRGAFYDVQVSE 266

Query: 296 E-----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                         P+ G   V N+L A  + I +GI    +     +   V  RF   G
Sbjct: 267 RVTGEARTIERVHLPMYGLHNVQNSLAAIAVAINMGIADEQIRASFARFSGVKRRFTRTG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL- 409
             S G  +  DY H    ++ +LK  R   SGR I V      R      +  +      
Sbjct: 327 -ESNGVVVIDDYGHHPVEIQAVLKAARMAGSGRTIAVV--QPHRYSRLSSLFEEFCTCFN 383

Query: 410 -ADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAI-EMLNKQD 460
            AD  IV D     E P      E +   +  HG        +  EA+   + E+    D
Sbjct: 384 DADAVIVADVYAAGEQPVEGASKEALVEGLRTHGHRNVQALPSP-EALAGIVRELAQPGD 442

Query: 461 VLVVAGKG 468
           ++V  G G
Sbjct: 443 MVVCLGAG 450


>gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM
           555]
 gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016]
 gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555]
 gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 457

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 83/433 (19%), Positives = 147/433 (33%), Gaps = 51/433 (11%)

Query: 49  IVGNKEDGHLFIPQAIAQGAE----AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           + G K     +I Q I+Q        +V ++A S  +       +   + + +  +FL  
Sbjct: 51  LKGAKV----YIGQ-ISQNITSDIDLVVYTAAISKNNEELLKAKDLN-IPLMDRAEFLGE 104

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                     +  +AV+GT GK++  S +  I   + L    +   +            +
Sbjct: 105 IMKGH-----KYNIAVSGTHGKTTTTSMLSSITLEANLDPTILVGGNLDIIGGNVRIGNS 159

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P  I  A        +    + +                       N+  DH+DY++  +
Sbjct: 160 PFFITEACEYKESFLKFFPFIGI---------------------ILNIDADHLDYYKDIE 198

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              NA ++  + +  +          A  + + K   N  C V+S G +   I  K +C 
Sbjct: 199 EIQNAFIKFGKLIPKEGYLVCC----ADDRRMEKIISNVNCNVMSYGIETGDITAKNICF 254

Query: 285 I--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                        + K F     +PGE  + NAL +  + + + I    ++  L+     
Sbjct: 255 DKEGRAFFEVYKSDKKLFSLNLSVPGEHNILNALASISVSLILNISVDNIINGLKSFKGT 314

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPI 401
             RFE  G    G  +  DYAH    ++  L   +     RII VF      R       
Sbjct: 315 HRRFEIKGQRK-GVVVIDDYAHHPTEIKATLNAAKNYPHKRIICVFQPHTFSRTISLFKE 373

Query: 402 MGKIALDLADIAIVTDDNPRSE-DPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               A D  D  I++D  P  E D  +I       +II          +    ++    +
Sbjct: 374 FT-AAFDNVDELILSDIFPAREKDTGEISSSMLCEQIIKRGVKCRNIKDFDSIVQYLNNI 432

Query: 456 LNKQDVLVVAGKG 468
           L + DVL+  G G
Sbjct: 433 LTEGDVLLTIGAG 445


>gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 130b]
          Length = 447

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 109/351 (31%), Gaps = 34/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++A+TGT+GKS+V + V ++ + +G      G   T      D+             
Sbjct: 104 SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPVLDMLDDE------------ 151

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS  LD      +  +  +  N+  DH+D H T +AY  AK R+
Sbjct: 152 ------HHYDLWVLELSSFQLDL--TYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +                 +          +  +          I  +    +    +  +
Sbjct: 204 YRGAKAVLFNREDVYTVPHQSCQADIKCISFGKDAPSMGNWGLIEQENTIYLAKGMERLL 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            VE      +                 L  A GI    +L  L+    +P R ++V    
Sbjct: 264 PVESILIKGVHNWMNALAACA------LAEAAGISMQHILNVLKTFPGLPHRCQWVREVD 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G I         +    +  I     G+  +V   GG         + +   +     
Sbjct: 318 GVGWINDSKGTNIGATISAINGIGGSMQGK--IVLIAGGQGKGADFQELAQPVSEFVRSI 375

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++       ED +KI + +   +P  +   +   A+  A       DV+++
Sbjct: 376 VLI-----GEDADKIESALAKVVP-VVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 447

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 108/351 (30%), Gaps = 34/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++A+TGT+GKS+V + V ++ + +G      G   T      D+             
Sbjct: 104 SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPVLDMLDDE------------ 151

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS  LD      +  +  +  N+  DH+D H T +AY  AK R+
Sbjct: 152 ------HHYDLWVLELSSFQLDL--TYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +                 +          +  +          I  +    +    +  +
Sbjct: 204 YSGAKAVLFNREDVYTVPHQSCQADIKCISFGKDAPSMGNWGLIEQENTTYLAKGMERLL 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            VE      +                    A GI    +L  L+    +P R ++V    
Sbjct: 264 PVESILIKGVHNWMNALAACAL------AEAAGISMQHILNVLKTFPGLPHRCQWVREVD 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
             G I         +    +  I     G+  +V   GG         + +   +     
Sbjct: 318 GVGWINDSKGTNIGATISAINGIGGSMQGK--IVLIAGGQGKGADFQELAQPVSEFVRSI 375

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++       ED +KI + +   +P  +   +   A+  A       DV+++
Sbjct: 376 VLI-----GEDADKIESALAKVVP-VVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|269122823|ref|YP_003305400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314149|gb|ACZ00523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 405

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 27/168 (16%)

Query: 3   LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           L++LI K    L                  VS +S+      +F AI      G+ +  +
Sbjct: 7   LEELIGKKIFSLKEDFK-------------VSINSKEATPNSVFFAI----NKGNDYAKE 49

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A + GA  ++                      V+++ KF+  FA R    +   ++ +TG
Sbjct: 50  AESMGA-FVIYDKKELDIHNGH---------YVEDSVKFMQEFARRYRKNNKFIVIGITG 99

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           ++GK++V   +  +    G+  ++               L+      +
Sbjct: 100 SNGKTTVKDILHSVLSNKGVRVYKTQGNYNNHIGLPFTILSAKDSDEI 147


>gi|257076744|ref|ZP_05571105.1| folylpolyglutamate synthase/dihydrofolate synthase [Ferroplasma
           acidarmanus fer1]
          Length = 428

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 129/398 (32%), Gaps = 42/398 (10%)

Query: 99  RKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-TSTISSF 156
                 FAS +     +   + + GT+GK S+AS+V  I ++   +     P     +  
Sbjct: 21  LTATQDFASHVGNPQSKFKTIHIAGTNGKGSIASYVYNILRQKYKTGMYTSPHLLDFNER 80

Query: 157 AQDNRLTTPSPIYLAKALSY------------------------LSSQGVTHVSVEASSH 192
              +    P    +    S                                +    A   
Sbjct: 81  IILDLNMIPDSYIIDFMNSNRDYIENLATIYRNPTFFETTTVMAFKYFADNNADYAAIEV 140

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL   RLD   +I    + + +   +++Q       +       ++    P ++   D  
Sbjct: 141 GLG-GRLDSTNIINPEVSVIAQIGYEHYQRLGCSLTSIAHEKGGIIKNGKPVVL--LDNK 197

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V +    A  R   +     +  +  +    +     +    +++       G FQ+
Sbjct: 198 PEVVAEITKIASVRNSKLVKISDYCSITDLKFNLDGMSFKLQTPVEEYHITTSNLGLFQL 257

Query: 313 YNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            N   A      +         +E   +    P RFE +        + +D +H   +  
Sbjct: 258 GNISTAVASMELLPEGSPGKKSIEKGIRESRWPSRFEVISREPL---VIMDSSHNPPAAH 314

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN--PRSEDPEKI 428
            +++      + + +++ G   D+D      M  I   L+D  I+T  +   RS DP+ +
Sbjct: 315 ALVETFSNFVTQKPVLLIGMLDDKDYF--SYM-SILRKLSDSVILTTPDEPSRSLDPDAL 371

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            A I H  P      + +EA   AI+  +    ++V G
Sbjct: 372 AAGIGHMFPSIRIIKDPVEAYNFAIQNYS---CVLVTG 406


>gi|251778502|ref|ZP_04821422.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082817|gb|EES48707.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 872

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 66/380 (17%), Positives = 139/380 (36%), Gaps = 21/380 (5%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
             + +YG++P+N + +   +G +   +  + I        + +G TST   +  +  +  
Sbjct: 466 IINMMYGENPKN-IPIVSVTGTNGKTTTTRLINHVLSKMGYSVGMTSTEGIYVNNKCIHK 524

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQ 223
                   A + L ++ V    +E +  GL +  L          TN+  DH+       
Sbjct: 525 GDDSGFNSAKTILLNRDVDIAVLETARGGLIRKGLAYDIADVSVITNITNDHLGLDGINS 584

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---- 279
               +    L  E + +    ++ ADD +SK ++ R                        
Sbjct: 585 MEQLSFVKALVGEAVKENGFTVLNADDKWSKTIINRIKANKIFFSKYENNELIQKNISDG 644

Query: 280 -------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                       + N  +        D    +    ++ + N + A G  + + ID  ++
Sbjct: 645 GIAIFIENDYIVVVNNHKKYSICSINDVPLSYNGLLKYNLENIMAACGALVGMNIDYCMI 704

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCG 391
            + +   ++      F      G +I +DY H     + +L ++  I   + +I V G  
Sbjct: 705 SKGIMDFNLNNNNGRFNIYEVDGRKIILDYGHNIEGYKAVLSSLNKIKKDKDLIGVIGIP 764

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGN 444
           GDR       +GKI  ++ D  I+ +D + R  +  +I + + +G+             +
Sbjct: 765 GDRCDDIAIEIGKICSEMLDKIIIKEDRDRRGREQGEIASLLKNGVLRENKNSKIHVCLD 824

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
            I+A+  A+ +  K D +VV
Sbjct: 825 EIKALEKALMISKKGDTIVV 844


>gi|298293097|ref|YP_003695036.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506]
 gi|296929608|gb|ADH90417.1| UDP-N-acetylmuramate/alanine ligase [Starkeya novella DSM 506]
          Length = 469

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 145/439 (33%), Gaps = 59/439 (13%)

Query: 50  VGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF 105
            G K      I  A     GA  +VVSSA    +          + VV   R+   L+  
Sbjct: 51  KGIKVH----IGHAAGNIDGAAVLVVSSAIRRDNPELVAARAKRLPVV---RRAEMLAEL 103

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                    ++ +A+ GT GK++  S V  +    G     I     I+++  + RL   
Sbjct: 104 MRL------KSCVAIAGTHGKTTTTSLVATLLDAGGFDPTVI-NGGIINAYGTNARLGDG 156

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             + +    S                          + +     TN+  +H+D+ +T  A
Sbjct: 157 EWMVVEADESD--------------------GTFLKLPVEVAIVTNIDPEHLDHFKTFDA 196

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A  R F + LP    A++  D    ++++ R  +          Q     L  +   
Sbjct: 197 VQ-AAFRSFIDNLPFYGFAVMCTDHPVVQDLVGRVEDRRVITYGENPQADV-RLVDLDLR 254

Query: 286 HNKQQVTISVEGKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
               +  +   G++ D          P+PG     NA  A  +   +G     +   L  
Sbjct: 255 GGVCRFNVLFRGRNGDVRHELRDLVLPMPGRHNALNATAAIAVAHELGASDEQIRSALAG 314

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  RF   G    G  I+ DY H    +  +L+  R  T G++I V      R    
Sbjct: 315 FGGVKRRFTRTG-EVNGVTIFDDYGHHPVEIAAVLRAARASTEGQVIAVV--QPHRYTRL 371

Query: 399 RPIMGKIALDL--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIR 450
           + +  + A     AD  IV D  P  E P      + +   +       +      +A+ 
Sbjct: 372 QSLFDQFATCFNDADHVIVADVYPAGEAPIPGIDRDHLVEALRARGHRSVVALPGPDALA 431

Query: 451 TAIE-MLNKQDVLVVAGKG 468
             ++     +D +V  G G
Sbjct: 432 GIVKTFAKPEDYVVCLGAG 450


>gi|312898960|ref|ZP_07758348.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
 gi|310620122|gb|EFQ03694.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
          Length = 462

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 97/288 (33%), Gaps = 21/288 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+  DH+D++ T +    A       L P+   A++ AD+   +  +     
Sbjct: 174 HPHIAVVTNIDADHMDHYGTIENVIQAFKDFIHLLDPQTGLAVLCADNDKIRAFLPEVKR 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
                            K +     K    +    +        +PG   V NAL    +
Sbjct: 234 PFVTYAI--EAPADYKAKNIGYHEGKLIFDVYKHDEFLGSVELNVPGNHNVLNALATVAV 291

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            ++ GI    +   L + H    RF+  G    G  +  DYAH    +   L   R++ +
Sbjct: 292 SLSCGISFEDIAAALSRFHGAKRRFQTKGH-VNGIWVVDDYAHHPTEIHATLAAARSMGT 350

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDNPRSEDPEK------IRAEI 432
            R++ +F         +  ++ +    A   AD  I+TD     EDP        +  ++
Sbjct: 351 HRVVCLFQPHR---YTRTQLLAEEFSKAFTCADKLILTDVYSAGEDPIPGIGGTFLTDKV 407

Query: 433 IHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
                      G + E +    +    +D+++  G G     I   GE
Sbjct: 408 KSATGQDVEYIGTKEELLEYLRKNARPRDLILTMGAGD----IYKVGE 451


>gi|21224390|ref|NP_630169.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces coelicolor
           A3(2)]
 gi|6919932|sp|Q9X827|MURC_STRCO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4691386|emb|CAB41553.2| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           coelicolor A3(2)]
          Length = 462

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 137/429 (31%), Gaps = 46/429 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A  +VVSSA      +         P++   +    L     
Sbjct: 54  GATVHIGH--AAEHLAADASCVVVSSAIREDNPELVRAAELGIPVVHRSDALAAL----- 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   +AV GT GK++  S +        L          + +   +        
Sbjct: 107 -MNGLRP---IAVAGTHGKTTTTSMLAVSLSELDL-GPSYAIGGDLDAPGSNALHGEGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + +     
Sbjct: 162 FVAEADESDRSFHKYA--------------------PEVAIVLNVELDHHANYASMDEI- 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                 F   +      +I AD   ++E+ +R       V     +   + +  V     
Sbjct: 201 YESFETFAGKIVPGGTLVIAADHEGARELTRRLAGRVRTVTYGESEDADVRILSVVPQGL 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +VT+ ++G +  F   +PG    +NA+ A     A+G+ +A +   L     V  R +
Sbjct: 261 KSEVTVVLDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVKRRLQ 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKI 405
             G  + G ++   YAH    +   L+ +R       I+V        R Q     MG+ 
Sbjct: 321 LKG-EAAGVQVVDSYAHHPTEMTADLEAMRAAVGDARILVLFQPHLFSRTQELGKEMGQ- 378

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           AL LAD ++V D  P  EDP      E I               ++  +      M    
Sbjct: 379 ALALADASVVLDIYPAREDPIPGVTSELIVEAARAAGADVTPVHDKDASPALVAGMAKAG 438

Query: 460 DVLVVAGKG 468
           D+++  G G
Sbjct: 439 DLVLTMGAG 447


>gi|67920791|ref|ZP_00514310.1| UDP-N-acetylmuramate--alanine ligase [Crocosphaera watsonii WH
           8501]
 gi|67856908|gb|EAM52148.1| UDP-N-acetylmuramate--alanine ligase [Crocosphaera watsonii WH
           8501]
          Length = 503

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 130/419 (31%), Gaps = 53/419 (12%)

Query: 71  IVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A    +  ++A      PI    +    L               +AV GT GK++
Sbjct: 114 VICSTAIGHNNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTT 164

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++G+                   +               +  G      +
Sbjct: 165 TSSLIGYMLLKAGVD---------------PTIIVGGEVDAWEGNARIGARGGYLVAEAD 209

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++QT             +            
Sbjct: 210 ESDGSLTKH-----YPNIGIVTNIELDHPDHYQTLDDVVKTFQIFETQCDILIGCL---- 260

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                + V  +   +    L       +   + +   +         +    +    +PG
Sbjct: 261 ---DCETVATQLTPSITYSLDSNKGADYTVKQLLSDHNGTTAQVWEKDKYLGEMRLTIPG 317

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL A  +   +G++ +++ + L        RFE  G    G     DYAH  + 
Sbjct: 318 NHNVSNALAAIAVGRKLGLEFSVIADALFTFEGAKRRFEQRGH-CNGVTFIDDYAHHPSE 376

Query: 369 LEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGK---IALDLADIAIVTDDNPRSE- 423
           +E  L   R    G  I  V          +     K   +  + AD+ ++TD     E 
Sbjct: 377 IEATLSAARCKVDGNNISRVVAIFQPHRYSRTATFLKEFSVCFNYADLVVLTDIYSAGEV 436

Query: 424 DPEKIRAEIIH------GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIV 475
           +   I  + +            I + +   A+  A+  +L   D+++  G G+    I+
Sbjct: 437 NRHNISGQDLAIAVQDNHHAQVIYEPSLK-ALNEALTSLLQPGDLVLFLGAGNLN-QII 493


>gi|157363500|ref|YP_001470267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
 gi|167017289|sp|A8F4W9|MURD_THELT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157314104|gb|ABV33203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
          Length = 430

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 126/370 (34%), Gaps = 54/370 (14%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           K  S     L    P  ++AVTG++GK++    +  + Q+ GL S+  G           
Sbjct: 83  KTFSDIEVVLDMNKPNFVIAVTGSNGKTTSCKLLSFVFQKLGLDSYACGNIG-------- 134

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
               TP+   L             ++ +E SS  L       + +  G   N+  +H+D+
Sbjct: 135 ----TPAADVL--------GFKTKYLVLEISSFQLFWS--KMLHIDIGVVLNIQPNHLDW 180

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H + + Y  +K++L E                +  E          ++  V         
Sbjct: 181 HPSLEHYAKSKLKLLEFSKTGIYNCSDQNIMKFISEKSNLCAFDPLKIRKVDDG------ 234

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEHLEK 338
                        I  EGK + F        Q    L A     + +  D   VLE LE 
Sbjct: 235 -------------IVYEGKYYTFKNDFLKTHQNLQNLSAILKIFSVMNFDLKQVLEILED 281

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +  R EFV   +    +    A    S    +  +    S  +I++    G +++  
Sbjct: 282 FKPLKHRMEFVDEINGVVFLNDSKAT---SSAATISALENFNSRNVILLLAGRG-KNEDY 337

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             ++ +I    A   IV       E  E +R E+      +    N   A+  A E+  K
Sbjct: 338 ADLIAQI-KRKAKHVIV-----FGEMVELLRDELKLSDIPYTISENMQNAVLKAFEISEK 391

Query: 459 QDVLVV--AG 466
            DV+++  AG
Sbjct: 392 GDVVLLSPAG 401


>gi|226356746|ref|YP_002786486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Deinococcus deserti VCD115]
 gi|226318736|gb|ACO46732.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Deinococcus
           deserti VCD115]
          Length = 433

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 8/117 (6%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ DSR       FVA+ G +  G+ F+  A+A GA  ++            +       
Sbjct: 24  LTWDSREASPDVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDVPRALRVPSQEE---- 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
               N R  L  +A +   ++   ++ +TG++GK++  S+     +   +  +   P
Sbjct: 80  ---SNARDALFAWARQERARNSL-VVGITGSAGKTTAKSYAAAALEAHYMPVYNTMP 132


>gi|84686338|ref|ZP_01014232.1| UDP-N-acetylmuramate--L-alanine ligase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665521|gb|EAQ11997.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2654]
          Length = 467

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 143/423 (33%), Gaps = 47/423 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           FI Q       AE +V+SSA      +         P++        L            
Sbjct: 61  FIGQRAENLENAEVVVISSAIKPGNPELDTARARGLPVVRRAEMLAELMRL--------- 111

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +AV GT GK++  + V ++    G+    I     I ++  + R+            
Sbjct: 112 KSNIAVAGTHGKTTTTTLVAELLVAGGIDPTVI-NGGIIHAYGSNARMGQGE-------- 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + VEA       +RL          TN+  +H+D+  T++A        F
Sbjct: 163 ---------WMVVEADESDGTFNRLPATI---AIVTNIDPEHMDHWGTEEALHK-GFYDF 209

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A+   DDA  + ++ +  +          Q     +             + 
Sbjct: 210 VSNIPFYGLAVCCTDDADVQTLVGKITDRRVVTFGFNAQADVRAVNLTYDAGIAHFDIVL 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +G+      P+PG+  V NAL A  +   +G+  A + E L K   V  RF  VG    
Sbjct: 270 PDGRIDGCTLPMPGDHNVSNALAAVAVSRHLGMKFAEIREALAKFGGVNRRFTRVGM-WN 328

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
              I  DY H    +  +LK  R    GR+I V      R      +          AD+
Sbjct: 329 DVPIIDDYGHHPVEIAAVLKAARQAVKGRVIAV--HQPHRYSRLHSLFDDFCTCFNEADV 386

Query: 413 AIVTDDNPRSED--PEKIRAEIIHGIP----GFIEKGNRIEAIRTAI-EMLNKQDVLVVA 465
             +++     ED  P   R +++ G+           +  E +   +       D++V  
Sbjct: 387 VGISEVYAAGEDPIPGATRDDLVRGLTAHGHRHAYAVDTEEDLAALVRAEAEPGDIVVCL 446

Query: 466 GKG 468
           G G
Sbjct: 447 GAG 449


>gi|227824226|ref|ZP_03989058.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904725|gb|EEH90643.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 429

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 12/153 (7%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  L       +   +     L   PGR E +        + +D AH  + + ++ + +
Sbjct: 268 AAEVLAKKDPAITEKKILKGMDLTTWPGRMELIHERPD---VILDGAHNPSGVTVLRRAL 324

Query: 377 RTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDN-PRSEDPEKIRAEII 433
            T    G    +FG  GD+D      + +I     D    V  DN  R+E P+ +   + 
Sbjct: 325 DTYYPHGHRYFIFGMMGDKDVS---EVAQILFRDTDTIYTVLADNGTRAEKPDVLARRL- 380

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 I   +   A  TA+      DV++V G
Sbjct: 381 --HKKAIPMDDLKTAFETAVHEAGPDDVVLVCG 411


>gi|222153421|ref|YP_002562598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           uberis 0140J]
 gi|254766059|sp|B9DUV7|MURD_STRU0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222114234|emb|CAR42820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           uberis 0140J]
          Length = 453

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 136/427 (31%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         + +G + +  S    L D    +    P +   N    K LS   
Sbjct: 38  NDGKAFEENPAAQSLLEEGIKVVCGSHPLELLDEDFAVMVKNPGIPYQNPMVEKALSKGI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+A+TG++GK++  + +  +    G S+   G     +S  
Sbjct: 98  PVLTEVELAYLISEAP---IIAITGSNGKTTTTTMIADVLNHGGKSALLSGNIGFPASEV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                              +++     +++E SS  L    +          TNL   H+
Sbjct: 155 ------------------AMTASQDDILTMELSSFQL--MGIKDFHPHIALITNLMPTHL 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH +  AY  AK  +   +   +   +    D   +   K   +          +G + 
Sbjct: 195 DYHGSFDAYIQAKWNIQNNMTADDVLILNAEQDQTKELAQKTQASLVYFSSKEKVEGAYQ 254

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K+                       +PG   V NAL    +    GI +  + E L 
Sbjct: 255 EDGKLFYKGEYIMDA---------QSLGVPGLHNVENALATIAVAKLSGISNQAIAETLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R + +GT           +     +    K +    + ++I++   G DR   
Sbjct: 306 SFGGVKHRLQKLGTIKDVAFYNDSKSTN---ILACQKALSGFDNNKVILI-AGGLDRGNA 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I        I+       E  EK++        G++E  +  +A R A E   
Sbjct: 362 FDTLIPDI--KGLKKMIL-----LGESAEKMKEAAERAGVGYLEAKDVADATRIAFEQAQ 414

Query: 458 KQDVLVV 464
             D++++
Sbjct: 415 PGDIILL 421


>gi|220931750|ref|YP_002508658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
 gi|219993060|gb|ACL69663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
          Length = 456

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 102/286 (35%), Gaps = 19/286 (6%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V  E SS  L+  R    K    +F N   DH+D H + + Y+ AK R+FE  +  
Sbjct: 158 KNDWVVAEVSSFQLETIR--DFKPHISAFLNFSPDHLDRHLSVENYWKAKKRIFENQMSG 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   + Y       +V+K   +   RV  V  +        +             E    
Sbjct: 216 DYALVNY----DDYKVLKAVEDCSARVFGVSLKDNIEQGIYLEEDKLIINSADRSEVVLP 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               PL G+  +YN   A+ +    G  +  + E + +    P R E V        +  
Sbjct: 272 VESIPLKGKHNIYNIAFASLIAYLAGASTEAIKEGVYQFIPEPHRLEEVTVLKDRVMVID 331

Query: 361 D-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           D  A   ++    LK+         IV+   G DRD        +I   +  + ++    
Sbjct: 332 DSKATNPHAAINALKSFDQ-----PIVLIAGGQDRDADFSEFAREIVSRVRALILL---- 382

Query: 420 PRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E  +K+   ++  G     +  +  EA+R AI      DVL++
Sbjct: 383 --GETKDKLAETVLRMGFNNIYKVRDMNEAVRKAIAHTEPGDVLLL 426


>gi|319791816|ref|YP_004153456.1| cyanophycin synthetase [Variovorax paradoxus EPS]
 gi|315594279|gb|ADU35345.1| cyanophycin synthetase [Variovorax paradoxus EPS]
          Length = 855

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/381 (16%), Positives = 116/381 (30%), Gaps = 24/381 (6%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRL 162
           FA    G+ P  ++AVTGT+GK++ A  +  +   SGL +                    
Sbjct: 461 FAHGDDGRIP--VVAVTGTNGKTTTARLINHLLASSGLRTGMTNTDGVYVDGRQTDSGDC 518

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-------GIKLIAGSFTNLGRD 215
           + P           + +             GL   R         G     G       +
Sbjct: 519 SGPKSARNVLMHPDVDAAVFEVARGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYITTVE 578

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
            +   +       A            + A + A                          +
Sbjct: 579 DLAVLKRVIVRNVAADGYAVLNAADVNVAAMAAGCPGHVIFFTADRMHPVMATHRAQGKR 638

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            +++ +   +  +      +  +D          FQV N + +     A+G+D   +   
Sbjct: 639 TVYVDQDTLVAAEGSWRERIPLRDVPITRNGTIGFQVDNVMASVAAAWAVGLDWDTIRSG 698

Query: 336 LEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           L          PGRF     + RG  +  DY H ++++  ++  + T+ + +  VV    
Sbjct: 699 LASFMNDAAGVPGRFNV--MDYRGATVIADYGHNTDAMRALVSAVDTMPANKRSVVISGA 756

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNP-RSE---DPEKIRAEIIHGIPGFIEKGN-RI 446
           GDR          I  +  D  I+  D   R     +   +  + + G     +    R 
Sbjct: 757 GDRRDSDIRDQTAILGEAFDDVILYQDAAQRGRADGEVMALLRQGLQGAGRTRQIDEIRG 816

Query: 447 E--AIRTAIEMLNKQDVLVVA 465
           E  AI TA+  L   D+ ++ 
Sbjct: 817 EFVAIDTALARLQPGDLSLIL 837


>gi|187932746|ref|YP_001884683.1| cyanophycin synthetase [Clostridium botulinum B str. Eklund 17B]
 gi|187720899|gb|ACD22120.1| cyanophycin synthetase [Clostridium botulinum B str. Eklund 17B]
          Length = 872

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 77/193 (39%), Gaps = 8/193 (4%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                + N  +        D    +    ++ + N + A G  + + ID  ++ + +   
Sbjct: 652 NDNIIVVNNHKKYSICSINDVPLSYNGLLKYNLENIMAACGALVGMNIDYCMISKGIMSF 711

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGK 398
           ++      F        +I +DY H     + +L ++  I   + +I V G  GDR    
Sbjct: 712 NLNNNNGRFNIYEIEDRKIILDYGHNIEGYKAVLSSLDKIKKDKDLIGVIGIPGDRCDDI 771

Query: 399 RPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRT 451
              +G+I  ++ D  I+ +D + R  D  +I + + +G+             + I+A+  
Sbjct: 772 AIEIGEICSEMLDKIIIKEDKDRRGRDEGEIASLLKNGVLRKNKNAKIHVCLDEIKALEK 831

Query: 452 AIEMLNKQDVLVV 464
           A+ +  K D +VV
Sbjct: 832 ALMISKKGDTIVV 844


>gi|220931753|ref|YP_002508661.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
 gi|219993063|gb|ACL69666.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
          Length = 459

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 154/416 (37%), Gaps = 49/416 (11%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ IV+S+A    +    A  ++  P+           + A  +  K     +A++GT
Sbjct: 62  KGADMIVISTAIPEDNSELQAARKAGLPVYG------RAQMIAKLMEDK---KTIAISGT 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  I + + +    +     +++   +  L            S        
Sbjct: 113 HGKTTTTSMVATILKENKMDPTVM-VGGVLNNIGGNVYLGKGEYFVTEADESD------- 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                          L          TN+  DH DY+ +++   N   + F   +PK+  
Sbjct: 165 -------------GSLLYFDPSGVVVTNIEFDHHDYYDSKEKLLNT-FKEFVNKIPKDGK 210

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           AI+YA+D     + K   N   RVL+ G     +    +  +       +    +   + 
Sbjct: 211 AIVYAEDDN---IRKILDNEDRRVLTYGINAGKLKAININTLPFGSYYNLVYGERVLGEI 267

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V N+L A  + + +G+    + E L K + V  RFE  G       I  DY
Sbjct: 268 RLQVPGVHNVLNSLAAVAVGMYVGLSFTDIQESLGKFYGVHRRFEKKGLIDS-ILIIDDY 326

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
           AH    ++  LK  R     RII +F     R    R  M + A      D  IVTD   
Sbjct: 327 AHHPTEIKATLKAARNTGYERIIAIF--QPHRYSRTRHFMEEFAKCFDDVDHLIVTDIYS 384

Query: 421 RSEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            SE P      EK+  +I +   P         E +    +++  +D+++  G G+
Sbjct: 385 ASEKPIPGVTAEKLALKIDNCNGPDVDYIPELEEVVDYVEKIIKPRDLVITIGAGN 440


>gi|229815102|ref|ZP_04445439.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
 gi|229809332|gb|EEP45097.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
          Length = 468

 Score = 71.1 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 123/355 (34%), Gaps = 34/355 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           PE   A+TGT+GK++V S   ++ + SGL S  +G          D R            
Sbjct: 109 PERWCAITGTNGKTTVTSLTDELLRASGLDSVAVGNIGNAPIHEVDRR------------ 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +       E SS+ L     +          NL  DH+ +H++ + Y  AK+R+
Sbjct: 157 ------EEGEWFVAELSSYQLAT--TEAFHPRVAVLLNLSPDHLAWHRSHENYALAKIRM 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+ +   +   +   D+  S  + +        +              V       ++  
Sbjct: 209 FKNMDDGDIAIVNVEDEGLSPYLDRICGPGRRVLHLGFADDGAADAAFVRDDVLTVRMAG 268

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       + G   V NAL A+   +A G     V   L +   +P R E V T  
Sbjct: 269 DEHALVRVDELRIVGAHNVLNALAASAAALACGASVTGVCSGLREFKPLPHRLEPVDTVD 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A  ++++   L        G  IV+   G D+       M K+A  +A + 
Sbjct: 329 GVRYVNDSKATNTDAVLTALAAF----DGARIVLLLGGSDKGTPLEEFMAKVASRVACVV 384

Query: 414 IVTDDNPRSEDPEKIRAEIIH--GIPGF--IEKGNRIEAIRTAIEMLNKQDVLVV 464
                    E  E++R  ++   G       E  +  +A+  A  +  + D +++
Sbjct: 385 CF------GEARERLRTALMDAPGATDIDIAEAEDLRDAVDVARSLAQRGDTVLL 433


>gi|332982069|ref|YP_004463510.1| FolC bifunctional protein [Mahella australiensis 50-1 BON]
 gi|332699747|gb|AEE96688.1| FolC bifunctional protein [Mahella australiensis 50-1 BON]
          Length = 433

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/402 (14%), Positives = 117/402 (29%), Gaps = 40/402 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N    L L  +          + + GT+GK SV      I +++G  +           
Sbjct: 23  ENISYLLQLLGN---PHRKLRCIHIAGTNGKGSVTVMTASILEKAGYKTGLFISPYLEDF 79

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR- 214
             +        P      L+ +  Q V  +  E   H  +   +  I     +  N+   
Sbjct: 80  RERIQINQNYIPKDDLARLTDVVKQKVEQMLAEGRPHPTEFEVVTAIGFCYFAEQNVDYA 139

Query: 215 --------------------------DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                     D+                    + P     +   
Sbjct: 140 VIEVGLGGRLDSTNVIDPLVSVITSIDYDHKDILGDTLAKIAYEKAGIIKPGRPVVVYPQ 199

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + +        ++ V Y         +   H           + +  L     
Sbjct: 200 QDEAMDVIKQVCQQRQSPLIEVSYSDIEAIDDSIDGQHFNYNEGKWTFNRLYIPLLGKHQ 259

Query: 309 EFQVYNALVAAGLCIAIGI--DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                 A+ A  +         S   +     +   PGR E V        + +D AH  
Sbjct: 260 LMNAATAITAVLVLRKYMGVAISDKAIAEGLSVTKWPGRLELVHRQPY---VLLDGAHNP 316

Query: 367 NSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSED 424
              + +   I+      R+I+V G   D+D      + ++ + LA   I T  D+PR+ +
Sbjct: 317 QGAQSLANAIKNYFPHNRVIMVLGILADKDV---RAILEVLVPLAAYIITTRPDSPRAIE 373

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E++   +           N   A++T+++M    D++V++G
Sbjct: 374 AERLLTLVKEMNVQGQAIDNIEFAVQTSLDMAEPDDLVVISG 415


>gi|304440543|ref|ZP_07400430.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371021|gb|EFM24640.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 462

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 126/409 (30%), Gaps = 37/409 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ ++ + A SL +          I +V +   FL            +  +A++GT GK
Sbjct: 70  GADLVIYTDAISLDNEELREAIKQKIDIV-DRASFLGALMKNY-----KISMAISGTHGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S V +I +                     N L     I L +A  Y ++      +
Sbjct: 124 TSTTSMVSEIIRNLPERPTI--LLGGKLDDINGNVLVGNREIMLTEACEYKANVLKYFPT 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                   N+  DH+DY    +   N   + + + L   S  I+
Sbjct: 182 TAV-------------------ILNIDEDHLDYFDNMEHIVNT-FKGYADNLKPGSTLIL 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y +E+  R +                   K C     +             +  +
Sbjct: 222 NIDDPYVRELQNRDNTTVVTFGVENDADYTAKNIKFCEDGYPEYDLYYKGSLIGKVILSV 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + N+L A        I     ++ +     V  R EF G    G +++ DYAH  
Sbjct: 282 LGIHNIKNSLAAIACAHENNISFKDAIDGIHSYKGVHRRLEFKGM-FGGAKVFDDYAHHP 340

Query: 367 NSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-D 424
             +   L  I+      +  +F      R +       K   + AD  I+TD     E D
Sbjct: 341 TEILASLHAIKRGCERNLYCIFQPHTFTRTKILLDSFSKSFSE-ADYTIITDIYAAREKD 399

Query: 425 PEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I        I       +      + ++   + L   D +V  G G
Sbjct: 400 YGDIHSKTLVDAINQNKDKALYIETFRDIVKFLKDNLRPGDTVVTMGAG 448


>gi|300813578|ref|ZP_07093909.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512326|gb|EFK39495.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 462

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 89/286 (31%), Gaps = 12/286 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        N+  DH+DY            + F E L K    II  DD  +++++   +
Sbjct: 179 LFPTTAVILNIDEDHLDYFDNIDHIIRT-FKGFTEKLNKNDYCIINIDDENTRKLLPIDN 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                                             +         + G   +YN L A G 
Sbjct: 238 AKLITFAIDKKADYMAKNIDFDMYGRPYYDLYYKDKYIGKVELAILGYHNIYNTLAAIGA 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C   GID    ++ +     V  R EF G   +  R+  DYAH    ++  +  I+    
Sbjct: 298 CHENGIDFEKCIKGIGDYKGVHRRLEFKG-LYKNSRVMDDYAHHPTEIKSSISAIKKSCK 356

Query: 382 GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED------PEKIRAEIIH 434
            R+  VF      R +       K     +D+ I+TD     E        + +   I +
Sbjct: 357 KRLFTVFQPHTFTRTKLLLDSFAKSFDQ-SDVIIITDIYAAREKDYGDIHSKTLVDAISN 415

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVHIVTNG 478
                I      + I+   E L   D +V  G G+  E    +   
Sbjct: 416 HHKNAIYIKEFSDIIKYLKENLKDDDTVVTMGAGNVYEIGQELLKN 461


>gi|120435103|ref|YP_860789.1| cyanophycin synthetase [Gramella forsetii KT0803]
 gi|117577253|emb|CAL65722.1| cyanophycin synthetase [Gramella forsetii KT0803]
          Length = 895

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 131/383 (34%), Gaps = 27/383 (7%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +   GK+    + +   +G +   +  + I   + LS   +G T++   + Q+  + +  
Sbjct: 472 ALFPGKNDTGRIPLIAITGTNGKTTTTRLIAHIAKLSGKLVGYTTSDGVYIQNRMVMSGD 531

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                     L    +    +E +  GL +  L   +   G  TN+  DH+         
Sbjct: 532 CTGPKSTELVLRDPTINFAVLECARGGLLRSGLAFQESDIGIVTNVEGDHLGLGGIHTID 591

Query: 227 FNAK-MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---- 281
             A+   +  E +  +  AI+ ADD    ++                  +    ++    
Sbjct: 592 QLARLKSVIPETVKPDGYAILNADDDLVYDMRHELRCKLALFSMDENNPRIKRFQEEGGI 651

Query: 282 --------VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                   V       ++ + ++ ++    F     F + N L A       GI    + 
Sbjct: 652 TAIYEEGYVTITSGVWKMRV-MKAEEIPLTFEARAHFMIQNILPAILAVHLKGISIQDMK 710

Query: 334 EHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             L+         PGR  F           +DYAH  + ++ + K   T T    I +  
Sbjct: 711 AALQSFIPSDSQTPGRLNFFKFR--KFSFLLDYAHNPSGMKALQKFTDTFTESYKIGIIA 768

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPG------FIEK 442
             GDR +     +G IA ++ D  I+ +D + R +  + +   I  GI            
Sbjct: 769 GIGDRLERDTVKIGSIAAEMFDEIIIRNDRDLRGKSADHLIQLIKEGIQKIDPLKVVSLI 828

Query: 443 GNRIEAIRTAIEMLNKQDVLVVA 465
            +  +AI+ A +   K  ++++ 
Sbjct: 829 PSETDAIKQATQKAPKNSLIILC 851


>gi|256425925|ref|YP_003126578.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
 gi|256040833|gb|ACU64377.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
          Length = 446

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 120/390 (30%), Gaps = 45/390 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
               +          P++         S             ++A+TG++GKS+  +    
Sbjct: 74  PEKSELMKKVRAQQVPVI---------SEIEFAYRYSKDSKVIAITGSNGKSTTTALTFN 124

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I + +GL +  +G                            +++    +  VE SS  LD
Sbjct: 125 IFETAGLHAAMVGNIGLS-------------------YARQIATAPADYYIVEVSSFQLD 165

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R    K       N+  DH+D +  + A + A           E   +   DD     
Sbjct: 166 DIR--DFKPNVAILLNITPDHLDRYDYKMANYVASKFRIAMNQGPEDYFVYCIDDPEITN 223

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +K        +       + +      A                 +   L G+  +YN+
Sbjct: 224 YLKEHTIYSTTIPF--TIMEPLKQGGFMANEQVNIQVNDEPMIVSMYDLALKGKHNLYNS 281

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A      + I    + E L     +  R E+V T      I    A   NSL   L++
Sbjct: 282 MAAGIAGRTMDIRKEKIRESLTSFKSLEHRMEYVATVRGVDFINDSKATNVNSLWFALES 341

Query: 376 IRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +         VV   GG D+      I   +   +  I  +  DN        I+  +  
Sbjct: 342 ME------HPVVLVMGGVDKGNDYSAIRDLVKEKVKAIICLGVDN------APIQDALSG 389

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             P  I+  +  +A+  A +   K DV+++
Sbjct: 390 YTPVMIDTRSMKDAVNAAFQYAAKGDVVLL 419


>gi|148257423|ref|YP_001242008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409596|gb|ABQ38102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 458

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 21/154 (13%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGN-----------KEDGHL 58
              E+   L      + E  I+ V+ DSR ++ G +FVA+ G              DG  
Sbjct: 7   TVAEVARALG-LAGDYPETPIDLVTQDSRAVKPGSLFVALSGTPSGGFVSSFASSRDGWE 65

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENI 117
           F   A   GA A++V               + P LVV +T    L   A     +    +
Sbjct: 66  FAANAEQAGAVAMIVPHRIDGI--------SVPQLVVPDTLIDGLWALARAARARFHGPV 117

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           + +TG++GK+S   F+      S   S       
Sbjct: 118 IGLTGSAGKTSTKEFIAAYPGASASPSSFNNFWG 151


>gi|206901118|ref|YP_002250970.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
 gi|254765999|sp|B5YEL2|MURC_DICT6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206740221|gb|ACI19279.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
          Length = 464

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 135/404 (33%), Gaps = 45/404 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
               +++      N PIL   +    L+           +  + V G  GK++  S +  
Sbjct: 74  PPDNEEYVYAKSKNIPILHRSDLLAELTK---------EKKSIIVGGAHGKTTTTSMIAL 124

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + + +      I     +     + +L +   +      S                    
Sbjct: 125 VLENNKTDPTII-VGGELEDIGGNAKLGSGEYLVAEGDESD------------------- 164

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +  +       TN+  DH+DY++  +   +  +++ E++       +          
Sbjct: 165 -GSILKLNPYILVVTNIDNDHLDYYENIENIKSTFLKVIEKVPEDGYVLLNLDCKNIRDI 223

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEFQVYN 314
           + K       +  + G+         +    +  +  +     K       +PG   + N
Sbjct: 224 IGKIK---DKKYYTYGFSNADFTADNIVLNSSGSEFDVYFRNVKLGRVKLKVPGRHNILN 280

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L A G+   +G+D    ++ LEK H V  R +F G       ++ DY H    +   L+
Sbjct: 281 SLSAIGISYILGLDFEQTIKALEKFHGVQRRIQFKGVIENDVLVFDDYGHHPTEILATLE 340

Query: 375 NIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EK 427
            +R   + R++VVF      R       +   AL L+D+ I+ +     E P        
Sbjct: 341 TLRLY-NRRLVVVFQPHRYTRTYFLSKEIAD-ALSLSDVVILMEIYSAGEKPIPGVSSRN 398

Query: 428 IRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I  EI    P        + +EA      +L   D+L+  G G+
Sbjct: 399 IYDEIKKKYPELEIYLVNDIVEAATKVKSVLRDGDLLLTLGAGN 442


>gi|282883226|ref|ZP_06291825.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus lacrimalis
           315-B]
 gi|281297038|gb|EFA89535.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus lacrimalis
           315-B]
          Length = 462

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 90/286 (31%), Gaps = 12/286 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        N+  DH+DY            + F E L K+   II  DD  +++++   +
Sbjct: 179 LFPTTAVILNIDEDHLDYFDNIDHIIRT-FKGFTEKLNKDDYCIINIDDENTRKLLPIDN 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                                             +         + G   +YN L A G 
Sbjct: 238 AKLITFAIDKKADYMAKNIDFDMYGRPYYDLYYKDKYIGKVELAILGYHNIYNTLAAIGA 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C   GID    ++ +     V  R EF G   +  R+  DYAH    ++  +  I+    
Sbjct: 298 CHENGIDFEKCIKGIGDYKGVHRRLEFKG-LYKNSRVMDDYAHHPTEIKSSISAIKKSCK 356

Query: 382 GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED------PEKIRAEIIH 434
            R+  VF      R +       K     +D+ I+TD     E        + +   I +
Sbjct: 357 KRLFTVFQPHTFTRTKLLLDSFAKSFDQ-SDVIIITDIYAAREKDYGDIHSKTLVDAISN 415

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVHIVTNG 478
                I      + IR   E L   D +V  G G+  E    +   
Sbjct: 416 HHKNAIYIKEFSDIIRYLKENLKDDDTVVTMGAGNVYEIGQELLKN 461


>gi|255034326|ref|YP_003084947.1| cyanophycin synthetase [Dyadobacter fermentans DSM 18053]
 gi|254947082|gb|ACT91782.1| cyanophycin synthetase [Dyadobacter fermentans DSM 18053]
          Length = 906

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 131/424 (30%), Gaps = 33/424 (7%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A GA  I       +           P++     R   +     L+    +  + +   +
Sbjct: 437 ASGAAVI------EVNASPGFRMHINPLIG--KPRDVGADVVKMLFPDPSKARIPLIAVT 488

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           G +   +  +            +G T+T   +     +          A   L++  V  
Sbjct: 489 GTNGKTTTTRLTAHLMRQPGICVGFTTTDGIYVDGRLVEQGDCTGPESARKVLTNPSVDV 548

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEELLPKESP 243
             +E +  G+ +  L   +   G  TN+  DH+  +  Q     A+   +  E + ++  
Sbjct: 549 AVLETARGGILRAGLGFDQCDVGVITNIAADHLGLNGVQTLEDMARVKSVIAESVSRDGY 608

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---------------FIHLKKVCAIHNK 288
           A++ A++ +   +  R                                 ++  + A    
Sbjct: 609 AVLNAENEHCVALAARLECKIAFFSINPENAHVLAHTCEGCLACIYRDGYITIIDASERI 668

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           Q   +           P   E  +   L A      +      +          PGR   
Sbjct: 669 QIEHVRDIPATMGGKCPFMIENVLAAVLAAYCQGARLSQIRQGLRAFQVSDQSTPGRL-- 726

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                R   + VDYAH  + L  + + ++TI +   + +    GDR       +G +A  
Sbjct: 727 NHFAFRDFNVLVDYAHNPHGLHALGEYLKTIPASGKLGIITGVGDRRDEDIRELGNVAAG 786

Query: 409 LADIAIVT-DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQDV 461
             D  I+  DD+ R    +++   +  GI             + + AIR A    +K  +
Sbjct: 787 CFDQIIIRLDDDLRGRQQQQMIDLLKQGITAANPLCKVQVISDELRAIRHATGRASKGQL 846

Query: 462 LVVA 465
           +VV 
Sbjct: 847 IVVL 850


>gi|160940412|ref|ZP_02087757.1| hypothetical protein CLOBOL_05302 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436992|gb|EDP14759.1| hypothetical protein CLOBOL_05302 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 13/167 (7%)

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-I 385
                 +         PGRF+ +  +     + VD AH  ++   + + + T  +GR  I
Sbjct: 319 HIPESAMRKGLSNVSWPGRFQMLKKSPM---VIVDGAHNRDAALRLRECVETCLNGRRLI 375

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKG 443
            + G  GD++ G   +M +I   LA+        D  RS +PE +  E      G     
Sbjct: 376 FIMGVFGDKEYG---LMTQIMAPLAERIYTVWLPDRGRSLNPEILAREAGKYCAGTQAVD 432

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGHETV--HIVTNGEKKMSVDCDI 488
           +   A+  A++   +Q  ++V   G  +    I+   E++   D   
Sbjct: 433 SVETALDMALKDAGEQGAVLVF--GSLSYLGQIMKETERRNRDDRQE 477


>gi|168214161|ref|ZP_02639786.1| FolC bifunctional protein [Clostridium perfringens CPE str. F4969]
 gi|170714382|gb|EDT26564.1| FolC bifunctional protein [Clostridium perfringens CPE str. F4969]
          Length = 440

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 133/391 (34%), Gaps = 47/391 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
                 + + GT+GK S  + +  + + +G                +             
Sbjct: 36  HKDTKFIHIGGTNGKGSTTAMISSVLKEAGFKVGMYTSPYLEEFEERIQINGENINKDDL 95

Query: 164 ----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                 T   I  A    Y S + V +  +E    G    RLD 
Sbjct: 96  AILMGDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGG----RLDA 151

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             ++      L    +D+            +    ++    P I Y  +  + EV+K   
Sbjct: 152 TNVVLPEVVVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVPVISYPQEEKALEVIKERC 211

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N  C  L V       ++  +    + Q++ +S+E +       L G+ QV N LVA   
Sbjct: 212 NELCCNLEVVDTEDIRNII-IDKEKHVQKIEVSLEDEILKIDLGLLGDHQVKNFLVALKT 270

Query: 322 CIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            I +  +    S   ++   K     GR E +   +    + +D AH  + +  +  +I 
Sbjct: 271 LIKLRNNGVNISNEAIKQGFKKVRWIGRMEVL---NENPLVVIDGAHNIDGIRNLRNSID 327

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
              + + I ++ G  GD+       M +      D  ++ + +  R+ED E +  ++   
Sbjct: 328 KYFNFKNITLILGVLGDKQVD---EMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVKKY 384

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    +  +  EA   A  + N+ D+L++ G
Sbjct: 385 VKEVFKFKDYKEAYNKAYSLTNEDDLLLICG 415


>gi|182420305|ref|ZP_02951534.1| cyanophycin synthetase [Clostridium butyricum 5521]
 gi|237666435|ref|ZP_04526420.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182375900|gb|EDT73492.1| cyanophycin synthetase [Clostridium butyricum 5521]
 gi|237657634|gb|EEP55189.1| cyanophycin synthase (L-aspartate-adding) [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 869

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 134/378 (35%), Gaps = 25/378 (6%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
             G+     + V   +G +   +  + I     +     G TST   +  D  +      
Sbjct: 471 YEGRPSN--IPVISVTGTNGKTTTTRMIGHVLKMMGMTTGITSTDGIYINDKCIHKGDDS 528

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYF 227
               A + L ++ V  V +E +  GL +  L          TN+  DH+           
Sbjct: 529 GFNSAKTLLLNRDVEAVVLETARGGLVRRGLAYDLADVAVITNITNDHLGLDGIDSMEDL 588

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV------------LSVGYQGK 275
                L  E + K    +I ADD YSK ++ R                    ++ G    
Sbjct: 589 MFVKSLVGEEVKKNGYTVINADDKYSKRILDRISCEKIYFSKSKDNELIKENINNGKIAV 648

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           FI    +C I+N ++  I +   +    +     + + NA+ A    + + ID  ++ + 
Sbjct: 649 FIEDNNICVINNHRKYLI-ISIDELPISYNGILTYNIENAMAACAALVGLNIDYCMISKG 707

Query: 336 LEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGD 393
                               G ++ +DY H     + +L  I  +    R+I V G  GD
Sbjct: 708 FSDFMPCDDNEGRFNMFEYYGRKVILDYGHNIEGYKAVLSCINKLKTKNRLIGVVGVPGD 767

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEIIH--GIPGFIEKGNRI 446
           R       +G+I  +  D  I+ +D  R      E  + ++  I+            + +
Sbjct: 768 RQDNVIKEIGEICCEYLDEIIIKEDKDRRGRSIGEVSQLLKISILKNSNKKNVKVYLDEV 827

Query: 447 EAIRTAIEMLNKQDVLVV 464
           +A+  AI++  K D+++V
Sbjct: 828 DALEYAIKISKKDDIIIV 845


>gi|218768809|ref|YP_002343321.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           Z2491]
 gi|325203530|gb|ADY98983.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240355]
          Length = 468

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 112

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 113 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 171 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 211 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 269 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 328

Query: 357 RIY----VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R      R+++ F      R +       K+     
Sbjct: 329 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 387

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 388 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 447

Query: 464 VAGKG 468
             G G
Sbjct: 448 NMGAG 452


>gi|225388505|ref|ZP_03758229.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
 gi|225045436|gb|EEG55682.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
          Length = 462

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 138/424 (32%), Gaps = 47/424 (11%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G +A+V ++A      +F A      P+L   +  +FL            +  +A++GT 
Sbjct: 72  GIQAVVYTAAIHEDNPEFIAAREKGLPML---SRAEFLGEMMRNY-----KQSIAISGTH 123

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V +    +G     +     +     + R+ +P             ++   +
Sbjct: 124 GKTTTTSMVAE-MLLAGDMDPTVSVGGILKDIGGNIRVGSPD---------LFVTEACEY 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +   S                    N+  DH+D+ +  +   ++  RLF + LP++   
Sbjct: 174 TNSFLS-----------FYPTLEVVLNIEADHLDFFKDLEDIRHS-FRLFAQKLPQDGLL 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I +     +++            S                       I           
Sbjct: 222 VINSGIENLQQITDGLKCRIVTFGSSPDSHYTAQNITYDEFARPSYDLIVQGKLVNRVSL 281

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + GE  VYN+L A  + + +G+    ++  L+       RFE  G    G  I  DYAH
Sbjct: 282 GVTGEHNVYNSLAAIAVVMELGVGFEAIMAGLKNFSGTDRRFEKKG-EIGGVTIIDDYAH 340

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L   +     ++  VF      R +       +     AD  I+ D     E
Sbjct: 341 HPQEIKATLAAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAETLAA-ADEVILADIYAARE 399

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKGHETVHIVT 476
                     I  +I           +  E I T  +E     D+L+  G G     IV 
Sbjct: 400 TDTLGVSSADIARKIQELGTPVHFIPSFDE-IETFILENCMNGDLLITMGAGD----IVK 454

Query: 477 NGEK 480
            GEK
Sbjct: 455 VGEK 458


>gi|189029207|sp|A8LS63|MURC_DINSH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 464

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 138/430 (32%), Gaps = 59/430 (13%)

Query: 59  FIPQAIAQGAEA--IVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           FI Q     A+A  +V+SSA      +         P++        L            
Sbjct: 60  FIGQVGENLADAEVVVISSAIKPGNPELETARARGLPVVRRAEMLAELMRL--------- 110

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +A+ GT GK++  + V  +  R G+    I     I ++  + R             
Sbjct: 111 KSNIAIAGTHGKTTTTTMVATLLDRGGIDPTVI-NGGIIHAYDSNARAGAGE-------- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + VEA       +RL          TN+  +H+++  + +   +     F
Sbjct: 162 ---------WMVVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGSFERLKD-GFHEF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A+   D    + ++ R  +          Q     +             + 
Sbjct: 209 VSNIPFYGLAVCCTDHPEVQALVGRITDRRVVTFGFNTQADVRAVNLTYKSGVAHFDILL 268

Query: 295 VEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                       P+PG+  V NAL A  +   +G+    +   L     V  RF  V   
Sbjct: 269 RNEGQVISGCTLPMPGDHNVSNALAAVAVARHLGMKRDEIRAALAGFAGVNRRFTKVA-E 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--- 409
             G  I  DY H    +  +LK  R  + GR+I V          +   +  +  D    
Sbjct: 328 LGGVTIIDDYGHHPVEIAAVLKAARQASEGRVIAV------HQPHRFSRLASLFEDFCTC 381

Query: 410 ---ADIAIVTDDNPRSED--PEKIRAE-----IIHGIPGFIEKGNRIEAIRTAI-EMLNK 458
              AD+  ++D     ED  P   R +     I HG    +   +  +A+   I      
Sbjct: 382 FNEADVVGISDIFAAGEDPIPGASRDDLVKGLIAHGHRHAVAVPD-EDALEALIRAEAKP 440

Query: 459 QDVLVVAGKG 468
            D++V  G G
Sbjct: 441 GDIVVCLGAG 450


>gi|325290584|ref|YP_004266765.1| FolC bifunctional protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965985|gb|ADY56764.1| FolC bifunctional protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 445

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 71/186 (38%), Gaps = 22/186 (11%)

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLC-----IAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           + +       L G  Q  NA  A  +C           +   +    +    P R E   
Sbjct: 249 QWRIKGLKPALLGRHQFSNACAALAVCEVLRDRYGFGITKENVVQGLQSAEWPCRLEVFS 308

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRT------ITSGRIIVVFGCGGDRDQGKRPIMGK 404
              +   I +D AH ++ +  +   + +      +   R+++  G   D+++ K     +
Sbjct: 309 AEPK---IVLDGAHNADGMTALRDALESELRDTVLAGKRLVLCLGMLADKEREKA---AE 362

Query: 405 IALDLADIAIVT-DDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQD 460
           I   LAD  I+T  D+PR+ +      ++     G        +  +A+R  +EML   D
Sbjct: 363 ILFPLADQVIITKPDSPRAGNWRS-LQDVAGRMIGPDKVRSIEDPEQAVREGLEMLAPGD 421

Query: 461 VLVVAG 466
           +L+V G
Sbjct: 422 MLLVTG 427


>gi|325980953|ref|YP_004293355.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
 gi|325530472|gb|ADZ25193.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
          Length = 471

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 117/389 (30%), Gaps = 34/389 (8%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             +       IR   P++   +    L  +A          +LA+TG++GK++V S V  
Sbjct: 78  PVADPFVQQAIRLGIPVIG--DL--VLFSWALEQNKLQKPKVLAITGSNGKTTVTSMVGA 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + ++SG      G                   I         +        +E SS  L+
Sbjct: 134 MLRKSGWDVAVAGNIGP--------------AILNVLMEQVDAGNWPQAWVLETSSFQLE 179

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +     +  N+  DH+D +   Q Y  AK+   +  L +         +     
Sbjct: 180 T--THNLNADVATVLNVSEDHLDRYTCMQDYIAAKL---KIFLRENGSVCTQILNRNDSG 234

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + + A   G ++              +    +   +              + G     NA
Sbjct: 235 ISEMALADGKQITFGWDIPPTDADFGIQRDGDDLWLMEGPHRLMKTSELVVNGLHNAVNA 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +C A+ I    ++  L +   +P R E V   +         +    +    L  
Sbjct: 295 LAALAMCRALDIPMNPLVSALREFRGLPHRMEKVAAFNGVTFFDDSKSTNVGATIAALNG 354

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++        V+   GGD        + +   +     ++        D   I  E+   
Sbjct: 355 MKQ------NVILIAGGDGKGQDFSHLRQTVAENTRAVVLI-----GRDAGIIADELKDC 403

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                      EA++ +  +    DV+++
Sbjct: 404 GVPVHFATTMEEAMQKSFLLAQAGDVVLL 432


>gi|219849719|ref|YP_002464152.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus aggregans DSM
           9485]
 gi|254765990|sp|B8G5Y3|MURC_CHLAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219543978|gb|ACL25716.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus aggregans DSM
           9485]
          Length = 474

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 65/420 (15%), Positives = 127/420 (30%), Gaps = 24/420 (5%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +GA+A++ ++A   +    T  +   I      R   +        + P 
Sbjct: 52  GHD---PAYVRGADAVLATAAIRGEHPELTAAAALGI-----PRLSRADLWREWSAQRP- 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV GT GK++ ++      +  G  +      + + +     +   P+   + +A  
Sbjct: 103 -VIAVAGTHGKTTTSAMTALALR-GGGVACGFLIGADVPALGGSAQWGDPTAPLVIEADE 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y         ++   ++   +     I   A  +     +     + ++           
Sbjct: 161 YDRVFLALTPAMAIVTN--VEWDHPDIYPTATDYAAAFAEFAAQVRDRRRLLLCADDPGT 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L  +  A  Y  D     +     +     L        +  +               
Sbjct: 219 AALDVDGQARWYGIDEQ---IACDPVSCRLAPLDWTASRVTVTAEGQQFDLWYYDRRTFA 275

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     +PG   V NA  A       G D       L        RFE  G    G
Sbjct: 276 RRFALMVTLAVPGIHNVRNATAALAAAALWGADLQAAGAALATYRGSSRRFEVYG-EVAG 334

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAI 414
             +  DYAH    ++  +   +    GR +VV+       + +        A   A I  
Sbjct: 335 VTVIDDYAHHPTEVQATIAAAQQRYPGRRVVVYVQPHTFSRTRSLWERWPEACRAAAIVS 394

Query: 415 VTDDNPRSE--DPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEMLNKQDVLVVAGKG 468
           + D  P  E  DP  +  E++  +  +    +       A    + ++   DV++V G G
Sbjct: 395 IGDVYPAREQGDPVALATELVAYLVAYGVVAHYGGGIATAAERLVALIQPGDVVLVLGAG 454


>gi|260687887|ref|YP_003219021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
 gi|260213904|emb|CBE05944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
          Length = 451

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  +    +  N+  DH++ H T + Y  AK  +F     ++   + Y
Sbjct: 164 ELSSFQLES--IDEFRPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDFCVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   K +  + +               ++L+    I +       +   D      LP
Sbjct: 222 -DDEVVKSLADKCNAKVIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDV----SLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + A  +     ID  +  + L     V  R EFV        +        +
Sbjct: 277 GGHNLENCMAAIAIAYVCKIDLEVTKDVLMTFKGVEHRQEFVRNLDNVIYVNDSKGTNPD 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    +++       R I++   G D+      ++ + A       ++       E    
Sbjct: 337 STIKAIQSYD-----RPIILIAGGMDKGSNFDELL-ETAKSYVKSLVL-----LGETASN 385

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G        +  EA++T+ E+    D++++
Sbjct: 386 IENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|254805545|ref|YP_003083766.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
 gi|254669087|emb|CBA07638.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
          Length = 506

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 136/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA  +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 101 NGANVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 150

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 151 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 208

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 209 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 248

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 249 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 307 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 366

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
                   DY H    +   L   R     +  +V      R    R +       L+  
Sbjct: 367 GGTALLVDDYGHHPVEMAATLSAARGAYPEKR-LVLAFQPHRYTRTRDLFEDFTKVLNTV 425

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 426 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485

Query: 464 VAGKG 468
             G G
Sbjct: 486 NMGAG 490


>gi|313127012|ref|YP_004037282.1| dihydropteroate synthase [Halogeometricum borinquense DSM 11551]
 gi|312293377|gb|ADQ67837.1| dihydropteroate synthase [Halogeometricum borinquense DSM 11551]
          Length = 834

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 9/128 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGRFE +        + +D AH   + E +   +       + +VFG   D+DQ K  
Sbjct: 293 YWPGRFEVM---ETDPFVVLDGAHNPGACESVASVLDDFDVDALHLVFGAMHDKDQRKMV 349

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNK 458
                AL  AD  I    +NPRSEDPE +       G+       + + A+ TA +  + 
Sbjct: 350 E----ALPDADSVITCRPNNPRSEDPETLAHVFEDAGVDDITVGDDVLSAVETARDRADA 405

Query: 459 QDVLVVAG 466
            D ++  G
Sbjct: 406 DDCILAVG 413


>gi|159044963|ref|YP_001533757.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
 gi|157912723|gb|ABV94156.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
          Length = 470

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 138/430 (32%), Gaps = 59/430 (13%)

Query: 59  FIPQAIAQGAEA--IVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           FI Q     A+A  +V+SSA      +         P++        L            
Sbjct: 66  FIGQVGENLADAEVVVISSAIKPGNPELETARARGLPVVRRAEMLAELMRL--------- 116

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +A+ GT GK++  + V  +  R G+    I     I ++  + R             
Sbjct: 117 KSNIAIAGTHGKTTTTTMVATLLDRGGIDPTVI-NGGIIHAYDSNARAGAGE-------- 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + VEA       +RL          TN+  +H+++  + +   +     F
Sbjct: 168 ---------WMVVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGSFERLKD-GFHEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A+   D    + ++ R  +          Q     +             + 
Sbjct: 215 VSNIPFYGLAVCCTDHPEVQALVGRITDRRVVTFGFNTQADVRAVNLTYKSGVAHFDILL 274

Query: 295 VEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                       P+PG+  V NAL A  +   +G+    +   L     V  RF  V   
Sbjct: 275 RNEGQVISGCTLPMPGDHNVSNALAAVAVARHLGMKRDEIRAALAGFAGVNRRFTKVA-E 333

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--- 409
             G  I  DY H    +  +LK  R  + GR+I V          +   +  +  D    
Sbjct: 334 LGGVTIIDDYGHHPVEIAAVLKAARQASEGRVIAV------HQPHRFSRLASLFEDFCTC 387

Query: 410 ---ADIAIVTDDNPRSED--PEKIRAE-----IIHGIPGFIEKGNRIEAIRTAI-EMLNK 458
              AD+  ++D     ED  P   R +     I HG    +   +  +A+   I      
Sbjct: 388 FNEADVVGISDIFAAGEDPIPGASRDDLVKGLIAHGHRHAVAVPD-EDALEALIRAEAKP 446

Query: 459 QDVLVVAGKG 468
            D++V  G G
Sbjct: 447 GDIVVCLGAG 456


>gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
 gi|151281756|gb|ABR90166.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
          Length = 853

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 132/372 (35%), Gaps = 30/372 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++    +  I Q +       G TST   + ++ R+ T        A + L
Sbjct: 471 VAVAGTNGKTTTVRLIAHILQGNKYRV---GMTSTDGVYIENKRIDTGDCSGPRSARNVL 527

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQA--------- 225
               V    +E +  G+ +  L   +      TN+G       ++  T +          
Sbjct: 528 MHPDVDAAVLETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRVIV 587

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A              A +      S     +  N            + +       +
Sbjct: 588 QNVAPNGTAVLNAADPMVANMAGSCPGSVTFFAQDSNHAVLATHRAQGHRVLFQDGNVIV 647

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV---- 341
            ++ +    ++  D          FQV NA+ A G    +G+D  +VLE L         
Sbjct: 648 LSEGKFEHRIQLSDIPITHNGTVGFQVENAMAAIGAAWGLGLDWNVVLEGLRTFENSASS 707

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRP 400
            PGRF     + +G  +  DY H  +++E + + +  + + R +VV    GD RD+  R 
Sbjct: 708 TPGRFNI--FSHKGATVIADYGHNPDAIEALTRAVEGMPAKRRMVVISGAGDRRDEDLRR 765

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAI 453
              +I  D  D  I+ +D   R     ++ A +  G+          E      AI TA+
Sbjct: 766 Q-TQILGDAFDDVILYEDQCQRGRADGEVLALLRDGLSNAKRTRFTQEIQGEFIAIDTAL 824

Query: 454 EMLNKQDVLVVA 465
             L   D+ ++ 
Sbjct: 825 AKLEAGDLCLIL 836


>gi|299139506|ref|ZP_07032680.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
 gi|298598434|gb|EFI54598.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
          Length = 458

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 135/423 (31%), Gaps = 44/423 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A  +VV+S+   +D    + +    + V    + L+      YG    
Sbjct: 56  GHT----AANAAASDVVVTSSAVAKDNPEVLEARARKIPVIQRAEMLAELMRLKYG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ G  GK++  S V  +    G     +     + +   + RL           ++
Sbjct: 108 --IAIAGMHGKTTTTSMVAAVL-AGGALDPTVVVGGRVDAMGSNARLGRS-----QYLVA 159

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  + + +                 I    TNL R+H+D +             F 
Sbjct: 160 EADESDRSFLKLS---------------PILAVVTNLDREHMDTYADLADVERV-FVEFM 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P         D+   + ++ R                 + + +     +      + 
Sbjct: 204 DRVPFYGAITACVDNEMLRAILPRVTRRIYTYGESPDADFRLRVLRPAPDCHATFEVNTR 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 F   +PG   + NA  A  + + +GI    +   L     V  RF+  G    G
Sbjct: 264 GLVLGPFNLHVPGRHNLLNATAAVAIGVQLGIPPEKIAAGLASFRGVDRRFQTKGV-QNG 322

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG--KIALDLADIA 413
             +  DY H    +   L+  R    GR++V+F     R    R ++     A   AD  
Sbjct: 323 VTVVDDYGHHPTEIRATLQAARECGYGRVLVLF--QPHRYTRTRDLLEDFTTAFGDADSL 380

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAG 466
            V D    SE P      E +  +I     G +   G+  EA+          D+++  G
Sbjct: 381 QVLDIYAASEQPIPGVSGESLAEKIRAASGGIVAYAGSMEEAVERLARDARPGDLVLTLG 440

Query: 467 KGH 469
            G+
Sbjct: 441 AGN 443


>gi|269213849|ref|ZP_05982991.2| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
 gi|269145192|gb|EEZ71610.1| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
          Length = 469

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                 I+   + +   + + T+ V+ K  +
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIESAGAQMKFTVHVQMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QEPFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R      R+++ F      R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   DV++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|186685868|ref|YP_001869064.1| cyanophycin synthetase [Nostoc punctiforme PCC 73102]
 gi|186468320|gb|ACC84121.1| cyanophycin synthetase [Nostoc punctiforme PCC 73102]
          Length = 901

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH + S E +   +R  T+G+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNAASYEAVGSFVRNWTTGQRIGVIGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAI 453
            +GK+A  + D  IV  DD+ R          II GI        +    +  +AI   +
Sbjct: 783 TLGKLAAQIFDYIIVKEDDDTRGRLRGSAAQLIIQGITQVKPDSRYESILDETQAINKGL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPDNSLVVIL 854


>gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 455

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 141/405 (34%), Gaps = 43/405 (10%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            + I +  + +VVS           +     +L      + +            +NI+A+
Sbjct: 64  DEVIDK-VQLVVVSPGVP-------LSKRIVVLAHKKGVEVIGEIELAYRFCKSKNIVAI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  + V +I ++        G          +                     
Sbjct: 116 TGTNGKTTTTTLVGEILKKQHKDVVVCGNIGLPFIDTVETS------------------S 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +E SS  L+   +   K + G   N+  DH++ H T + Y  AKMR+FE +   
Sbjct: 158 ENTIFVLEISSFQLET--IKYFKPMVGCILNITPDHLNRHMTMENYIKAKMRIFENIDET 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               + Y +      +     N      +       + +++       +  T  V  KD 
Sbjct: 216 GYTVLNYDNSVTRDLIGLAKGNVIVFSKNKNQFKNVVFIEENKIYFTFEGKTQEVMRKDE 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   +PGE  + NAL A    +  G+    +   L+    V  R EFV   +       
Sbjct: 276 IF---IPGEHNLENALAAIACTLPFGVTKDTIEYVLKNFKGVEHRIEFVTEINGIKFYND 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                +++ E  +    +      I++   G D+ +      G IA  +  + ++     
Sbjct: 333 SKGTNTDAAEKAISAFES-----PIILIAGGYDKGESFERFAGLIAKKVKKVFLL----- 382

Query: 421 RSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  +KI +E+   G   F    N  EA+  + E     DV+++
Sbjct: 383 -GQTKQKIASELEKIGYRNFELVSNLKEAVEKSFEYAKSGDVVLL 426


>gi|325128839|gb|EGC51698.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           N1568]
          Length = 469

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVITNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
                   DY H    +   L   R     +  +V      R    R +       L+  
Sbjct: 330 GGTALLVDDYGHHPVEMAATLSAARGAYPEKR-LVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|25008815|sp|Q9JSZ8|MURC_NEIMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325130849|gb|EGC53582.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           OX99.30304]
          Length = 469

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|296117539|ref|ZP_06836123.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969270|gb|EFG82511.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 477

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 86/422 (20%), Positives = 140/422 (33%), Gaps = 55/422 (13%)

Query: 70  AIVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD     A   ++ P++   +    L               + + GT GK
Sbjct: 73  VVVTSFAAIPQDNPELVAAREADIPVIRRSDLLAEL---------MQDRTQVLLAGTHGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S V    Q +G           ++    +               S  S        
Sbjct: 124 TSTTSMVVSALQAAGKD-PSFAIGGQLNRAGTNAHHGKDDIFVAEADESDASLLRYD--- 179

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+DY  + +AYF      F E +      I+
Sbjct: 180 -----------------PDIAVITNIEPDHLDYFGSAEAYFQV-FDDFAERIKPNGTLIV 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---------CAIHNKQQVTISVEG 297
             +D ++ E+ +RA  +G +V+  G          +                 VT+ +  
Sbjct: 222 CVEDEHAAELGRRAVESGVQVVGYGSSKALAQHPDITPGAEILTEEVGRETTAVTVKLPS 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            +  +   +PG   V N+  A       G  +  + E L     V  RFE+ GT     R
Sbjct: 282 GEVSYDLQIPGHHMVLNSAAALIAGELAGAKAQALAEGLSDFTGVRRRFEYRGTAGDNIR 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
           +Y DYAH    +  +L   R   +     GR++V F      R         K AL LAD
Sbjct: 342 VYDDYAHHPTEVAAVLGAAREKVTAEGLGGRVVVCFQPHLFSRTIEFANEFAK-ALSLAD 400

Query: 412 IAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             ++ D     E P +     I ++ I        + +   A +T  EM N  D+++  G
Sbjct: 401 AVVLLDIFGAREQPVEGVSSRIISDKIADDVDVTYEPDFSAARQTVAEMTNSNDLVLTMG 460

Query: 467 KG 468
            G
Sbjct: 461 AG 462


>gi|11272240|pir||A81777 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) NMA2061 [imported]
           - Neisseria meningitidis (strain Z2491 serogroup A)
 gi|121052817|emb|CAM09164.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis Z2491]
 gi|308388625|gb|ADO30945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           alpha710]
 gi|319411048|emb|CBY91448.1| UDP-N-acetylmuramate-L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 506

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 150

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 151 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 208

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 209 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 248

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 249 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 307 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 366

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 367 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 425

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 426 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485

Query: 464 VAGKG 468
             G G
Sbjct: 486 NMGAG 490


>gi|67925908|ref|ZP_00519191.1| Cytoplasmic peptidoglycan synthetase, N-terminal:ATP-dependent
           carboxylate-amine ligase-like, ATP-grasp:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67852248|gb|EAM47724.1| Cytoplasmic peptidoglycan synthetase, N-terminal:ATP-dependent
           carboxylate-amine ligase-like, ATP-grasp:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 872

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH     E + + ++     R+ VV G G  RD+    
Sbjct: 727 QTPGRMNL--FNLGEHHALVDYAHNPAGYEAVGEFVKNWQGQRLGVVGGPGDRRDEDL-V 783

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
           ++G+IA  + D  IV +D+      R E  + I   I+   P   +    +  EAI   +
Sbjct: 784 LLGQIAARVFDRIIVKEDDDKRGRDRGEAADLIIKGILSEKPQADYEAILDETEAINYGL 843

Query: 454 EMLNKQDVLVV 464
           + ++K  ++VV
Sbjct: 844 DKVDKGGLVVV 854


>gi|161899277|ref|XP_001712865.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Bigelowiella natans]
 gi|75756359|gb|ABA27253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Bigelowiella natans]
          Length = 550

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 89/256 (34%), Gaps = 37/256 (14%)

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD  +K +    +       S+      IH  K+       Q+ I     +F     L G
Sbjct: 246 DDDITKSMAITLNMRNFVFFSLVDSESDIHANKIIYSIWGTQLNIKSNENEFFLETKLIG 305

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  ++N L          I    +   +E++  +P R E +        + +DYA T   
Sbjct: 306 KHNMHNLLQCYTFSFFSKIPLPYIQFCIEEIDNIPNRLEKIDVGQ-NFNLLIDYADTPEG 364

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +  ++ +I      + + +          +  +  K  LD +    +T +NP+  + + I
Sbjct: 365 IVNLIGSIYESCFIKTLTIISGKSSYSTHENKLFLKHLLDSSKKLFLTANNPKWFNNKLI 424

Query: 429 RAEIIHGIPGFI------------------------------------EKGNRIEAIRTA 452
             E++ G+P FI                                       +R  A++  
Sbjct: 425 LNEVLMGLPDFIKYSHSGSVYDWFFDVQRIPLWFEYWFYKYQDDLGCYVIDDRDVALKIC 484

Query: 453 IEMLNKQDVLVVAGKG 468
           + M  K+DV++V G+G
Sbjct: 485 LSMAGKEDVVLVTGRG 500


>gi|150015283|ref|YP_001307537.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901748|gb|ABR32581.1| cyanophycin synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 880

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 10/177 (5%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLC--IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           ++    +    E+ + NA+ A      + +             L        F   N   
Sbjct: 670 RELPISYNGTLEYNIENAMAACAGLVGLEVDYCMISKGFMDFGLKNEDNSGRFNMYNYLN 729

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
            R+ +DYAH       I+ ++R I     +I V G  GDR       +G+I  +  D  +
Sbjct: 730 RRVILDYAHNIEGYRAIISSLRKIKGDNDLIGVIGIPGDRKDDIGYAIGEICANNFDKIV 789

Query: 415 VTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +D + R     +I   +   I             + ++A++ AI++ NK D++VV
Sbjct: 790 IKEDKDKRGRKSGEIADILEKSILKTNKNANLKICLDEVQALKYAIDISNKGDIIVV 846


>gi|126700267|ref|YP_001089164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile 630]
 gi|255101821|ref|ZP_05330798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-63q42]
 gi|255307688|ref|ZP_05351859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile ATCC 43255]
 gi|118595649|sp|Q182Y7|MURD_CLOD6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115251704|emb|CAJ69539.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Clostridium difficile]
          Length = 451

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 96/278 (34%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  +    +  N+  DH++ H T + Y  AK  +F     ++   + Y
Sbjct: 164 ELSSFQLES--IDEFRPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDFCVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   K +  + +               ++L+    I +       +   D      LP
Sbjct: 222 -DDEIVKSLADKCNAKVIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDV----SLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + A  +     ID  ++ + L     V  R EFV        +        +
Sbjct: 277 GGHNLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVEHRQEFVRNLDNVIYVNDSKGTNPD 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    +++       R I++   G D+      ++ + A       ++       E    
Sbjct: 337 STIKAIQSYD-----RPIILIAGGMDKGSNFDELL-ETAKSYVKSLVL-----LGETASN 385

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G        +  EA++T+ E+    D++++
Sbjct: 386 IENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|158321669|ref|YP_001514176.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus oremlandii
           OhILAs]
 gi|189028969|sp|A8MK48|MURC_ALKOO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158141868|gb|ABW20180.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus oremlandii
           OhILAs]
          Length = 465

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 139/416 (33%), Gaps = 44/416 (10%)

Query: 70  AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V ++A    +    A    N P +   +  + L +          +  +AV+G+ GK+
Sbjct: 73  LVVYTAAIKEHNPERMAAKERNIPQI---DRAEMLGIIMKNY-----KKAIAVSGSHGKT 124

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I + S L    +     +     + ++               + + V     
Sbjct: 125 TTTSLISLIMEYSNLDPTIM-VGGELDEIGGNIKIGNSE------HFITEACEYVESFLK 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                G+                N+  DH+DY +       A  R F  L+P+E   I  
Sbjct: 178 FYPFIGIIL--------------NIDEDHLDYFKDLNHIKEA-FRKFINLIPQEGFLIAN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DDA  +E++                                            F   +P
Sbjct: 223 GDDANVQEILHSIECNLITYGLDSSNTFVARNISFTNDGYPIFTVDFKGESMGTFELNIP 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  +YNAL +      +G++ + +  H++K   +  RF+ +G   +G +I  DYAH   
Sbjct: 283 GKHNIYNALASIATAYLLGVEPSEIQNHIKKFRGIHRRFDILG-EVKGCKIVDDYAHHPV 341

Query: 368 SLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DP 425
            +   L+  +     +I  VF      R +       + +   AD  I+TD     E D 
Sbjct: 342 EISATLEAAKNYPHNKIWCVFQPHTFSRTKALLEDFSR-SFTNADHIIITDIYAAREQDT 400

Query: 426 EKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            ++ +EI+  +              +  +      + +   D+++  G G+    I
Sbjct: 401 GEVHSEILANMIQKNNMHSQVRYMKDFEDIAAYIYDHMEPGDLVLTMGAGN-VYQI 455


>gi|254976246|ref|ZP_05272718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-66c26]
 gi|255093633|ref|ZP_05323111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CIP 107932]
 gi|255315381|ref|ZP_05356964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-76w55]
 gi|255518046|ref|ZP_05385722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-97b34]
 gi|255651162|ref|ZP_05398064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-37x79]
 gi|260684228|ref|YP_003215513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
 gi|306521010|ref|ZP_07407357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-32g58]
 gi|260210391|emb|CBA64782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
          Length = 451

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 96/278 (34%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  +    +  N+  DH++ H T + Y  AK  +F     ++   + Y
Sbjct: 164 ELSSFQLES--IDEFRPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDFCVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   K +  + +               ++L+    I +       +   D      LP
Sbjct: 222 -DDEVVKSLADKCNAKVIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDV----SLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + A  +     ID  ++ + L     V  R EFV        +        +
Sbjct: 277 GGHNLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVEHRQEFVRNLDNVIYVNDSKGTNPD 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    +++       R I++   G D+      ++ + A       ++       E    
Sbjct: 337 STIKAIQSYD-----RPIILIAGGMDKGSNFDELL-ETAKSYVKSLVL-----LGETASN 385

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G        +  EA++T+ E+    D++++
Sbjct: 386 IENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|85373184|ref|YP_457246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
 gi|84786267|gb|ABC62449.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
          Length = 459

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 126/403 (31%), Gaps = 63/403 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G + +VVS    L       R+     PI+   +      LFA       P  ++ +TGT
Sbjct: 64  GIDGLVVSPGVPLNTHPIVERAGHFGVPIIG--DIE----LFAQARSALPPHRVIGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + V  + + +G+ +   G         +                         
Sbjct: 118 NGKSTTTALVTHLLKEAGVEARMGGNIGLPILGEEPLPEG-------------------G 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D  R   +   A +  N+  DH+D +   ++Y  +K RLF         
Sbjct: 159 VYVLELSSYQIDLTR--SLACEAAALLNITPDHLDRYDGFESYAFSKGRLFTM-QGSGQF 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A    +DA ++ V   A +      ++  + +     +      +    +          
Sbjct: 216 ACFGCEDAQTRAVCNAAQSRRAEGRAICLEPEQYAAMQGDWPALQGPHNLQ--------- 266

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                     N   A  L   +G+        L     +P R E V  +     +    A
Sbjct: 267 ----------NVAAAIALVEEMGVTRGDWEAGLTSYSGLPHRMEVVCEHESVLFVNDSKA 316

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPR 421
               S    L         R+  + G     D        +G I    A    + +  PR
Sbjct: 317 TNPASTAPALAAWPADPEPRVHWIVGGLAKEDGLGECEAQLGNIKRAYA----IGEAGPR 372

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   AE++ G           EA++ A+      D++++
Sbjct: 373 F-------AELLGGRVPVERSELICEAVKQAVSNAEAGDIVLL 408


>gi|227824969|ref|ZP_03989801.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
 gi|226905468|gb|EEH91386.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
          Length = 463

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 146/423 (34%), Gaps = 47/423 (11%)

Query: 59  FIPQA---IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           FI  A   I + AE IVVS+A      +     +   P++   +   +L          +
Sbjct: 56  FIGHAACQIER-AEVIVVSTAIHPDNPELVEAHKRGVPVIHRSDVLAYL---------MN 105

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G  GK++ +S +  I   +G+    +     +++   ++       +     
Sbjct: 106 KHKGIAVAGAHGKTTTSSMLSLITCDNGID-PTVVVGGVVNNLGTNSVNGKSDYVVAEAD 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                               TN+  DH+D++ T++    A  + 
Sbjct: 165 ESDGSFLKFR--------------------PYLAVITNIENDHLDHYGTEEKIQEA-FQQ 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + + ++  AI+  D+   + V ++                +                +
Sbjct: 204 FVDQVKEQGKAILCYDNEKVRRVGEKTATEVISYGIDAKDADYRAENIEYGKDGTHYDIL 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K       +PG   V NAL A      +G+    +   LEK      RFE  G   
Sbjct: 264 FRGKKIGKGHLIVPGRHNVLNALGALAAARELGLSVEEISRSLEKFTGAKRRFETKG-RV 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
           RG  +  DYAH    +++ LK  R     R+IVVF      R Q        +A   AD 
Sbjct: 323 RGIWVVDDYAHHPTEIKVTLKAARQTQPKRLIVVFQPHRYTRTQLLLDEFA-VAFKEADE 381

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVA 465
            IVTD    SEDP      + +   I       +   +  E+I+   ++     D+++  
Sbjct: 382 LIVTDIYAASEDPIPGISGKMLAETIQRTTGQDVSYMSGFESIKNYLVDHAAAGDLVMTI 441

Query: 466 GKG 468
           G G
Sbjct: 442 GAG 444


>gi|167043602|gb|ABZ08296.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 134/430 (31%), Gaps = 48/430 (11%)

Query: 51  GNK-EDGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G +   GH   ++      GA  +V SSA        T+ +    + V    + L     
Sbjct: 77  GARIFKGHSAEYVG-----GACVVVHSSAVDPSQNPETLYAEEKHVPVIRRSEMLGELMR 131

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             +G      + + GT GK++  +    +    G     I     +++F  +        
Sbjct: 132 MKFG------IGIAGTHGKTTTTTMAGHVVGA-GAFDPTIIVGGKVAAFGSNAVSGEGDI 184

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAY 226
           I +                        +  R    +       TN+  DH+D ++  +  
Sbjct: 185 ILI---------------------EADEYDRTFLRLTPSLAVITNIDADHLDCYEDLEDI 223

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A    +   +P    AI+  DD   + ++ +         ++          +     
Sbjct: 224 R-AAFIQYASSVPFFGAAIVCLDDENVRGIISKIDRRVVTYGTLRQAQIRAESIQQEGRV 282

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 IS E +        PG   V NAL A  + I + +    +   +     V  R 
Sbjct: 283 MHFD-VISSEERLGRVSLDAPGRHNVLNALAAIAIGIELDMKFEDISAGISAFQGVDRRM 341

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             +G  +RG  +  DYAH    ++  L+        R IV         + +       A
Sbjct: 342 HEIG-EARGVLVVDDYAHHPTEIKATLEAASGCWPERRIVAVFQPHLYSRTRDFEDDFAA 400

Query: 407 LDLADIAIVTDD--NPRSEDPEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNK 458
                  +V  D    R E  E I  E+I       G P  I    + + +   +E+   
Sbjct: 401 AFFDADVVVIMDVFGAREEPIEGITGEVIATGAKKSGHPHVIYVPQKEDLVGRMLELSKP 460

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 461 GDVIITMGAG 470


>gi|304411645|ref|ZP_07393257.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|307306303|ref|ZP_07586048.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
 gi|304349833|gb|EFM14239.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|306911176|gb|EFN41603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
          Length = 439

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 124/398 (31%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + L         +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVP-------------ALDLLHENADL-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++           
Sbjct: 162 ELSSFQLET--THSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----------- 208

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PL 306
                   +  R          +      +   +                +        L
Sbjct: 209 ----SRAVLFNRDDKLTVPPEPMNQNSFGLAAPEADEWGISDSKIYHGSSEIMPITEVSL 264

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N L A  L  A+G+D  ++ +       +  R E VG  +    +    A   
Sbjct: 265 IGSHNHANLLAAMALVDAVGVDKQVMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L  +         ++   GGD        +G     +  +  +  D        
Sbjct: 325 GATVAALDGLSDHLGD---IILIAGGDGKGADFKPLGVALAKVTHLITLGRDG------- 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +I     G ++      A+  A E+    D++++
Sbjct: 375 ---KKIAALKDGAVKVDTMAAAVTKAAELATSGDIVLL 409


>gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
 gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
          Length = 821

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 105/337 (31%), Gaps = 34/337 (10%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQGAE-AIVVSSAYSLQDFSATIRSN--------------- 89
           F A+   +  G  +IP    +G    ++    +   +       +               
Sbjct: 17  FFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQL 76

Query: 90  --TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                L+V N  K L   A     K    ++ +TG++GK+ V  ++ Q+           
Sbjct: 77  STLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIV--- 133

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                 S  + ++++  P  +             +       S  G        IK   G
Sbjct: 134 -----RSPRSYNSQIGVPLSV-----WQLSEEAELGIFEAGISEMGEMGALKRMIKPTIG 183

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G  H +   + Q     K+ LF+     +       ++  S  V K    A    
Sbjct: 184 ILTNIGGAHQENFFSLQEKCMEKLTLFK---DCDVVIYNGDNELISNCVAKSMLTAREIA 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            S     + +++ +V    +   ++      D  F  P   +  + NAL     C+ +  
Sbjct: 241 WSRTDIERPLYISRVTKKEDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMT 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +  + E + +L  +  R E     +    I   Y  
Sbjct: 301 PADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNS 337


>gi|218289897|ref|ZP_03494087.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240037|gb|EED07223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 458

 Score = 70.3 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 126/377 (33%), Gaps = 51/377 (13%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            ++V +        A  L  +    I A+TG++GK++  + V ++ + SG      G   
Sbjct: 102 HVIVTDV-----EIAYWLEERP---IYAITGSNGKTTTTTLVGEMLKASGYHPIVAGNIG 153

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           T      D                         + +E SS  L+            +  N
Sbjct: 154 TPVCDVVDQ--------------------PGDLLVLEVSSFQLE--GTHTFHPRGAALLN 191

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD---DAYSKEVMKRAHNAGCRVL 268
               H+DYH T +AY  AK +LF    P +   + +        + E+  R         
Sbjct: 192 FYPAHLDYHGTYEAYQQAKWKLFANQTPDDVAILNWDQALVRDRAGELAARVRGFSLEGA 251

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                   I    V     ++   + V+         LPG   + NA  AA L +A G  
Sbjct: 252 PFDEGVGVIDGALVAVRGGERTPILPVD------QVALPGRHNLQNAAAAAALALAAGAH 305

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V   L     V  R EFV   +         A   ++    LK+       R +V  
Sbjct: 306 VEAVARVLATFQGVEHRLEFVREVAGVRYYNDSKATNPDAARQALKSFE-----RDVVWI 360

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIE 447
             G DR     P++  I+  +    ++       E  EK+R  +   G+   +      E
Sbjct: 361 AGGLDRGISFDPLLPDISGRVRAAVLL------GETKEKLREVLARAGVSTCVFASTMEE 414

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+R A  +    DV+++
Sbjct: 415 AVREASRIAEPGDVVLL 431


>gi|258645847|ref|ZP_05733316.1| tetrahydrofolate synthase [Dialister invisus DSM 15470]
 gi|260403220|gb|EEW96767.1| tetrahydrofolate synthase [Dialister invisus DSM 15470]
          Length = 440

 Score = 70.3 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 97/313 (30%), Gaps = 19/313 (6%)

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T   +  A A  Y       +  +E    G    R D   ++    + +    +D+ Q  
Sbjct: 118 TEFELLTAIAFWYFRENKADYAVMEVGMGG----RFDATNVVMPVVSVITNVAMDHMQYL 173

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                   R    ++ +  P +  A     KE+ K AHN   R+   G   +     K  
Sbjct: 174 GNTLQEIAREKAGIIKEGIPVVTAAQHVALKELKKDAHNKKARIYFYGRDFEIDTRNKWE 233

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--- 340
                      +  +    +  +P          A        +       +   L    
Sbjct: 234 QGQVVVVKRKGMPKELEKSMLFVPFIGAHQAVNAAVAAMALTILMKEDGRINENDLREGL 293

Query: 341 ---VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
                 GRFE       G  + +D AH     E + + +R      R I VF    D+  
Sbjct: 294 ARARWQGRFEIHHAG--GKTVVLDGAHNEAGAEALQEALREQYPDKRRIFVFSSLQDKTT 351

Query: 397 GKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEI-IHGIPGFIEK-GNRIEAIRTAI 453
                M    +   D         PR+  PE+I   I    I    +  G+  +A+  A+
Sbjct: 352 ETIIQM---LVRKGDKVYACAAPTPRTRTPEEICEMIDRQKIRAEHKIAGSVADALEKAV 408

Query: 454 EMLNKQDVLVVAG 466
           +  ++ D+++V G
Sbjct: 409 KEADENDIVLVCG 421


>gi|168215544|ref|ZP_02641169.1| FolC bifunctional protein [Clostridium perfringens NCTC 8239]
 gi|182382177|gb|EDT79656.1| FolC bifunctional protein [Clostridium perfringens NCTC 8239]
          Length = 440

 Score = 70.3 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 129/388 (33%), Gaps = 41/388 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-TPSPIYL 170
                 + + GT+GK S  + +  + + +G                +            L
Sbjct: 36  HKDTKFIHIGGTNGKGSTTAMISSVLKEAGFKVGMYTSPYLEEFEERIQINGENIDKDDL 95

Query: 171 AKALSYLSSQGVTHVSVEASSH--------------------------GLDQHRLDGIKL 204
           A  +  +       + +   S                           GL   RLD   +
Sbjct: 96  AILMGDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLG-GRLDATNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +      L    +D+            +    ++    P I Y  +  +  V+K   N  
Sbjct: 155 VLPEVVVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVPVISYPQEEKALNVIKERCNEL 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
           C  L V       ++  +    + Q++ +SV  +       L G+ QV N LVA    I 
Sbjct: 215 CCNLEVVNTEDIRNII-IDKEKHVQKIEVSVGDEILKIDLGLLGDHQVKNFLVALKTLIK 273

Query: 325 IGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +  +    S   ++   K     GR E +   +    + +D AH  + +  +  +I    
Sbjct: 274 LRNNGVNISNESIKEGFKNVRWIGRMEVL---NETPLVVIDGAHNIDGIRNLRNSIDKYF 330

Query: 381 SGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG 438
           + + I ++ G  GD+       M +      D  ++ + +  R+ED E +  ++   +  
Sbjct: 331 NFKNITLILGVLGDKQVD---EMVEEITKGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKE 387

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  +  EA   A  + N+ D+L++ G
Sbjct: 388 VFKFKDYKEAYNKAYSLTNEDDLLLICG 415


>gi|50955148|ref|YP_062436.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|59798226|sp|Q6AE65|MURC_LEIXX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50951630|gb|AAT89331.1| UDP-N-acetylmuramate-alanine ligase [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 464

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 61/274 (22%), Positives = 94/274 (34%), Gaps = 10/274 (3%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +A+ +A    F E   +          A       R    G RVL
Sbjct: 182 ITNVDPDHLDHYGSLEAFEDA-FVAFAEESAELVVVSSDDPGAQQVTRRLRKAAPGKRVL 240

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           + G                     +S +   +     +PG     NA  A  L   +G +
Sbjct: 241 TFGEAEDADIRVYSIVTDGPVAFALSHDSDVYSACLRVPGRHNAINAAGAFALLTGLGFE 300

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
            A  L  + +      RFE  G    G  +Y DYAH    +   L   RT+   GRII V
Sbjct: 301 PAASLAAIAEFGGTERRFELHG-TVAGVSVYDDYAHHPTEVAAALSAARTVVGDGRIIAV 359

Query: 388 FG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFIE 441
                  R +       +     AD  +V D     EDPE      + A++         
Sbjct: 360 HQPHLYSRTRLFAKEFAETLEAYADETVVLDVYGAREDPEPGVTGALVADLFAHPERVAF 419

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             +   A     E+  + D ++  G G +   IV
Sbjct: 420 IADWQAAADHTAEIAREGDFVITLGCG-DVYRIV 452


>gi|225077394|ref|ZP_03720593.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
 gi|224951278|gb|EEG32487.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
          Length = 469

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 136/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLY 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                  +   +  +  + + T+ V+ K  +
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTADI--YATDIENVGAQMKFTVHVQMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QEPFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R      R+++ F      R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|113475629|ref|YP_721690.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
 gi|110166677|gb|ABG51217.1| cyanophycin synthetase [Trichodesmium erythraeum IMS101]
          Length = 902

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 62/177 (35%), Gaps = 17/177 (9%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P      +   L      + I      +   +  +   PGR      N       VDY
Sbjct: 689 KAPFMIANALAACLAVFTQGVKIEHIRKGLSTFVASVDQTPGRM--NMFNMGSYHALVDY 746

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN--- 419
           AH   S E +   +R    G+ I V G  GDR       +G++A D+ D  I+ +D+   
Sbjct: 747 AHNPASYEALGGFVRN-WPGKRIGVVGGPGDRRDEDFVSLGELAADIFDEIIIKEDDDTR 805

Query: 420 --PRSEDPEKIRAEIIH---GIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             PR    E I   +     GI        +    +   AI TA++      ++V+ 
Sbjct: 806 GRPRGNAAELICQGVKQFLNGIKNSESKATYESILDETAAINTALDRAPIDGLVVIL 862


>gi|253998173|ref|YP_003050236.1| UDP-N-acetylmuramate--L-alanine ligase [Methylovorus sp. SIP3-4]
 gi|313200242|ref|YP_004038900.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
 gi|253984852|gb|ACT49709.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. SIP3-4]
 gi|312439558|gb|ADQ83664.1| UDP-N-acetylmuramate/alanine ligase [Methylovorus sp. MP688]
          Length = 465

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 136/409 (33%), Gaps = 53/409 (12%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           S  +  A   SNTP++     R   L+       G      +AV GT GK++  S +  I
Sbjct: 77  SNPEIIAARASNTPVI----PRALMLAELMRFRQG------IAVAGTHGKTTTTSLIASI 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G+    +     + + + + RL T   I      S  S                  
Sbjct: 127 LAEAGMDPTFV-IGGRLEAASANARLGTGEFIVAEADESDASFLH--------------- 170

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +  +    TN+  DH+D +             F + LP    A++  DD   + +
Sbjct: 171 -----LSPVISVVTNIDADHMDTYGHDFEKLKGAFVEFLQQLPFWGMAVLCIDDPNIRAI 225

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVY 313
           +         +     +   I  K V A +     T+        +FD    LPG   V 
Sbjct: 226 L--PSVTKPIMPYGFSEDARIRGKNVRADNGTMHFTVQRINGVTTEFDVTLNLPGNHYVL 283

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVDYAHTSNSL 369
           NAL A  +   + +  A +++ L +   V  RFE  G     N     +  DY H    +
Sbjct: 284 NALAAIAVASELNVPDAAIIKALREFKGVGRRFERYGEVPARNGGQFTLIDDYGHHPVEM 343

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSEDP- 425
           + ++   R    GR  +V      R    R       K+    AD  +++D  P  E P 
Sbjct: 344 QAVIAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVLSS-ADAVLLSDVYPAGEAPI 401

Query: 426 -----EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +   I   G    +      E     + +    DV++V G G
Sbjct: 402 VAADGRALVRAIRVAGKVEPLFVETTAELPEAILGVAQDGDVVIVMGAG 450


>gi|254495864|ref|ZP_05108774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
 gi|254354900|gb|EET13525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
          Length = 444

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 119/350 (34%), Gaps = 37/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TGT+GKS+V + V ++ + +G +    G          ++              
Sbjct: 105 APVIAITGTNGKSTVTTLVGEMAKAAGYNVAVAGNIGMPVLDMLEDE------------- 151

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  LD      +  +  +  N+  DH+D H +  AY  AK R++
Sbjct: 152 -----HQYDLWVLELSSFQLDL--TSSLAPVVATILNVSPDHLDRHHSMDAYIRAKQRVY 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     +++  D    E   +   A     +      +  + +   I+     +  
Sbjct: 205 HHAQ-----VVLFNRDDAYTEPAGQVIRAISFGNNQPATEDWGLINQEDKIYLAHGNSCF 259

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +  +         G     NAL A  L  A GI    ++  L     +  R ++V T   
Sbjct: 260 LATESVLIK----GVHNWLNALAACALADAAGIPRQYIISVLTTFSGLSHRCQWVRTLDG 315

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I         +    +  I     GRI+++ G  G     K     ++A  +AD   
Sbjct: 316 VEWINDSKGTNIGATISAINGIGGSMQGRIVLIAGGQG-----KGADFSELAQPIADFV- 369

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   ED +KI A +   +P      +   A+  A       DV+++
Sbjct: 370 -RSIVLIGEDADKIAAALADVVP-ITRASSLDNAVAVAKTQAKPGDVVLL 417


>gi|254441834|ref|ZP_05055327.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
 gi|198251912|gb|EDY76227.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
          Length = 465

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 142/416 (34%), Gaps = 51/416 (12%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           AE +V+SSA      +  A  +   P++     R+   L+           ++ +AV GT
Sbjct: 71  AEVVVISSAIKPGNPELDAARQRGLPVV-----RRAEMLAELMRM------KSNIAVAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  + +  G  +  +     I ++  + R+ +                   
Sbjct: 120 HGKTTTTTMVAALLEE-GKFNPTVVNGGIIHAYGSNARVGSGE----------------- 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA       +RL          TN+  +H+++  T +   +A    F   +P    
Sbjct: 162 WMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGTIENL-HAGFYDFVSNIPFYGL 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFD 301
           A+   DD+  + ++ +  +          Q     +             +  + +    D
Sbjct: 218 AVCCTDDSDVQTLVGKITDRRVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEDLTIKD 277

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G  I  D
Sbjct: 278 CALPMPGDHNVSNALSAIAVARYLGMKAEEIRAALAAFKGVGRRFTRVG-EVGGVTIIDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDN 419
           Y H    +  +LK  R  + GRI+ V      R                 AD+  +T+  
Sbjct: 337 YGHHPTEISAVLKAARQASDGRILAV--HQPHRYTRLHHHFADFCACFNDADVVAITEVF 394

Query: 420 PRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ED  +       +   I  G        N  + +    E     D++V  G G
Sbjct: 395 AAGEDVIEGATRDDLVAGLIRAGHRDARAITNEADLVALVKEQAKPGDMVVCLGAG 450


>gi|164688866|ref|ZP_02212894.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
 gi|164602070|gb|EDQ95535.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 124/425 (29%), Gaps = 51/425 (12%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK-------FLSLFASRLYG 111
           FI  A        +      +   +A    N  ++   N  K       FL         
Sbjct: 49  FIGHAKEN-----ISDDIDIVVYTAAIHPDNPELIEAKNKNKLTINRAAFLGQLMREY-- 101

Query: 112 KHPENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              +N +AV+GT GK++  S +  I        +  +G              +       
Sbjct: 102 ---KNSIAVSGTHGKTTTTSMLSTIFEHAELDPTILVGGNLKSIGGNVKIGHSDHFITEA 158

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            + +    +                               N+  DH+DY         + 
Sbjct: 159 CEYVDSFLNFN----------------------PKIAIVLNIEEDHLDYFSGIDEIKASF 196

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            +  + L       I    D  + +++        +          I       +     
Sbjct: 197 NKFGKLLPSDGYFVI--NGDNQNMDILHDVKAKAIKFGKKESNDVIIENIAFDDLGCGSF 254

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +  K   F   +PG   +YNA  A  + +  GID   V E +     V  RFE  G
Sbjct: 255 DLNYMGKKLTGFKLSVPGLHNIYNATSAIIVSLVSGIDLETVKEGIIDYTGVGRRFERKG 314

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409
               G  I  DYAH    ++  L   +    G +  VF      R         + A   
Sbjct: 315 Q-YNGAAIIDDYAHHPTEIKATLSTAKRFKKGTLWCVFQPHTYSRTISLLDEFAE-AFYS 372

Query: 410 ADIAIVTD------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AD  I+TD      D+P +     +  ++ H     I      + ++   E + + DV++
Sbjct: 373 ADKVIITDIYAAREDDPGTVHSRDLVEKLQHNNVDAIYISQFEDIVKYLKENVKENDVVI 432

Query: 464 VAGKG 468
             G G
Sbjct: 433 TTGAG 437


>gi|253580421|ref|ZP_04857686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848151|gb|EES76116.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 467

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 96/279 (34%), Gaps = 22/279 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+D+ +      ++  R F ELLP +   II AD    +++++    
Sbjct: 186 FPKISIILNMDADHLDFFKDIDDIRHS-FRRFAELLPADGTLIINADTPKYEDIIRDLPC 244

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                                   +     +    K   +   +PG   V NAL A  L 
Sbjct: 245 NVITYGLEHDADYQAADITYDKYGHASFSVLRNGVKVGSYYLKVPGIHNVSNALAAIALG 304

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+   ++++ L        RF++ G    G  I  DYAH    +E  L         
Sbjct: 305 HLLGLSEEVIIKGLGSFTGTDRRFQYKG-EVAGVTIVDDYAHHPTEIEATLHAAHNYPHK 363

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR---------SEDPEKIRAEI 432
           ++  VF      R +   P   K AL LAD  +V D             SED +K   E+
Sbjct: 364 KLWCVFQPHTYTRTKALLPEFAK-ALSLADHVVVADIYAARETDTLGISSEDLQKRIQEL 422

Query: 433 ---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  P F E  N        +    + D+L+  G G
Sbjct: 423 GTPCEYFPTFDEIEN------YLLSNCQEGDLLITMGAG 455


>gi|89891769|ref|ZP_01203271.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
 gi|89515924|gb|EAS18589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
          Length = 452

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 127/413 (30%), Gaps = 53/413 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH  I Q +   A+ +V S             I +N P++           FASR   + 
Sbjct: 62  GHD-IEQILN--ADVVVKSPGIPDNATIVQKIIEANIPVI-------SEIEFASRFSDE- 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+TG++GK++V S +  I Q +       G                         
Sbjct: 111 --VEIAITGSNGKTTVTSLIGHILQIANYDVTIGGNIG-------------------QSY 149

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + ++     +  +E SS  LD   +   K       N+  DH+D +  +   + A    
Sbjct: 150 AAQVAESPAEYRVLEVSSFQLD--GIKTFKPKVAVLLNITPDHLDRYDYKFENYVASKMR 207

Query: 234 FEELLPKESPAIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +    I  ADD   +   +  +  +                +K      N    
Sbjct: 208 IAMNQDENDFLIYNADDPTIQEAIIQFKPKSKLVPFSMQQALEYGAFIKDQQININLDTN 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             ++  +             +  A         + I    + + L     V  R E V  
Sbjct: 268 LFTMPIQKLSIKGQHNTANAMAAAT----TAKLLQIRKETIRQSLASFQGVEHRLEQVLK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            ++   I    A   N+    L ++      +  V    G D+      +   +  ++  
Sbjct: 324 INKVQYINDSKATNVNATYYALDSME-----KPTVWIVGGVDKGNNYSDLFALVNKNVKA 378

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I  + +DN       KI       +   +E  +  +A+R A ++    D +++
Sbjct: 379 IVCLGNDNS------KIVEAFSGCVDNMVETSSMEDAVRVAYKLAGPGDNVLL 425


>gi|126172652|ref|YP_001048801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS155]
 gi|125995857|gb|ABN59932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS155]
          Length = 439

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 122/398 (30%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + L         +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVP-------------ALDLLHENADL-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++           
Sbjct: 162 ELSSFQLET--THSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----------- 208

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PL 306
                   +  R          +      +   +                +        L
Sbjct: 209 ----SRAVLFNRDDKLTVPPEPMNQNSFGLAAPETDEWGISDSKIYHGSSEIMPITEVSL 264

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N L A  L   +G+D  ++ +       +  R E VG  +    +    A   
Sbjct: 265 IGSHNHANLLAAMALVDVVGVDKQVMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L  +         ++   GGD        +G     +  +  +  D        
Sbjct: 325 GATVAALDGLSDHLGD---IILIAGGDGKGADFKPLGVALAKVTHLITLGRDG------- 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +I     G +       A+  A E+    D++++
Sbjct: 375 ---KKIAALKDGAVRVETMAAAVTKAAELATSGDIVLL 409


>gi|121611475|ref|YP_999282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556115|gb|ABM60264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 475

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 130/367 (35%), Gaps = 34/367 (9%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
             +  V +D+R +QAG +FVA+ G + D H F                A +         
Sbjct: 44  TPVARVHTDTRTVQAGDLFVALRGPRFDAHAF--------LAQARAGGAAAALAQGGLAD 95

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           +  P + V ++   L+L A+    +    ++AVTG++GK++V   V  I +     +   
Sbjct: 96  AGLPGIEVPDSLAALALLAAGWRAQFDLPLIAVTGSNGKTTVTQMVAAILRAWQGDAALA 155

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYL----SSQGVTHVSVEASSHGLDQHRLDGIK 203
                      +       P+ L +  +         G+ H    A+  G+ Q  +    
Sbjct: 156 T--------QGNFNNAIGLPLTLLRLRARHTVAVVELGMNHPGEIAALAGIAQPGV---- 203

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N  R+H+++  +  A       +F   LP    A+  ADD Y     + A   
Sbjct: 204 ---ALVNNAQREHLEFMHSVAAVARENGSVFAS-LPAHGVAVFPADDDYQALWQELAAGR 259

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            C     G     +       +     +T++           + G   V NAL AA   +
Sbjct: 260 ECLRFGAG---GAVDGADARWVDGAWALTLATPQGPVTTRLHIAGRHNVGNALAAAACAL 316

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRTIT 380
           A G   A + + L     VPGR         G +I      Y    +S+   +  +  + 
Sbjct: 317 AAGAPLAALAQGLSGFSPVPGRSRSFSIRHAGRQISVVDDSYNANPDSVRAAIALLAELP 376

Query: 381 SGRIIVV 387
           + R++V+
Sbjct: 377 APRLLVL 383


>gi|307154434|ref|YP_003889818.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
 gi|306984662|gb|ADN16543.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
          Length = 498

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 125/417 (29%), Gaps = 51/417 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+ S+A +  +    A   +  PI    +    L               +AV GT GK++
Sbjct: 112 IICSTAIAANNAEYQAAKENGYPIFHRSDVLAALIK---------DYYSIAVAGTHGKTT 162

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL                D  +     +   +  + L          +
Sbjct: 163 TSSLIGYMLLKAGL----------------DPTIIVGGEVDAWQGNARLGQGRFLVAEAD 206

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++Q  +           +     +      
Sbjct: 207 ESDGSLAKH-----SPRIGIVTNIELDHPDHYQNLEEVIQTFQIFERQCETLIACI---- 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                + V +R +      L    +  +     V                       L G
Sbjct: 258 ---DCETVRQRLNPQITYSLDPEKEADYTVKNVVYHAQGSLVEVWERGQYLGQMNISLLG 314

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V N+L A  +   +G+D   +   +        RFE  G    G     DYAH  + 
Sbjct: 315 QHNVSNSLAAVAVGRKLGLDFEEIAVAVATFEGAKRRFEHKGH-CNGITFIDDYAHHPSE 373

Query: 369 LEMILKN--IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE- 423
           +   L+   +R+       VV      R       M + A     AD+ I+TD     E 
Sbjct: 374 IRCTLEAARLRSHQDCYSRVVAIFQPHRYSRTATFMDEFATSFSDADVVIITDIYSAGEV 433

Query: 424 -----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                  +++   I           +        +E+L   D+ +  G G+    I+
Sbjct: 434 NLGQMSGQQVADAISCYHKQVYYHPSLKSLGSFLVEILQPGDLALFLGAGNLN-QII 489


>gi|187477730|ref|YP_785754.1| cyanophycin synthetase [Bordetella avium 197N]
 gi|115422316|emb|CAJ48840.1| cyanophycin synthetase [Bordetella avium 197N]
          Length = 857

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 124/372 (33%), Gaps = 30/372 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++       I   SG      G T++   +    R+ T        A   L
Sbjct: 473 IAVAGTNGKTTTVRLSAHILAVSGKRV---GMTNSDGVYIGTRRIDTGDCSGPRSARRIL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQAYFNAKMRLF 234
               V     E +  G+ +  L   +      TN+G        Y  T +     K  + 
Sbjct: 530 LHPDVDAAVFETARGGILREGLAFDRCDVAIVTNIGMGDHLGLGYITTVEELAAVKRVIV 589

Query: 235 EELLP---------KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           + +               A + +             N            + ++ +    +
Sbjct: 590 QYVRNKGMAVLNAADTHVAAMASVCPGDVTFFAPDRNHPIIATHRAQGRRVVYREDDDIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             +    + +              FQV NA+   G    +GID A + + L         
Sbjct: 650 AAEGGEEVRIPLAQIPLTRDGAITFQVENAMACIGAAWGLGIDWATIRQALASFVNDAQT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRP 400
            PGRF        G  +  DY H  +++E ++  I  + + R  VV    GD RD+  R 
Sbjct: 710 APGRFNVFDYG--GATLIADYGHNPDAIEALVAAIEALPAKRRSVVISGAGDRRDEDLRR 767

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAI 453
              +I  D  D  ++ +D   R  +  ++ A +  G+          E      AI  A+
Sbjct: 768 Q-TEILGDYFDDVLLYEDQCQRGREDGEVIALLRQGLTQAKRASRIEEIRGEFIAIDRAL 826

Query: 454 EMLNKQDVLVVA 465
           E L+  D+ ++ 
Sbjct: 827 ESLSPGDLCLIL 838


>gi|260905301|ref|ZP_05913623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Brevibacterium linens BL2]
          Length = 488

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 143/463 (30%), Gaps = 57/463 (12%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
            V +DSR +  G I+VA  G   DG  F   A+  GA  I+  S            +  P
Sbjct: 29  GVVTDSREVGPGDIYVARRGESFDGIEFAAAAVEAGAALIIGES------VPTLDDATLP 82

Query: 92  ILVVDNTRKFLSLFASRLYGKHPE----NILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            ++V +  + L   A        E     ++A+TG+ GK++V      +      +    
Sbjct: 83  TVLVSDATEALGQLAKCNIESLREAGEITVIAITGSVGKTTVKDLAADLLAGEDETV--- 139

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                    + +N +  P       AL    +     + + A S G   +    ++    
Sbjct: 140 -----WPPNSYNNEVGVP-----LTALRAGETTRFLVLEMGARSIGNLAYLTSLVRPDIA 189

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               +G  H     + +    AK  L E  L   S AI+ ADD+    + +        +
Sbjct: 190 VELAVGTAHSGVFGSIENTARAKAELVES-LSAGSVAILNADDSRVAGMREVLSPDVSTL 248

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +     +    ++     VT +       F   LPGE      L   G       
Sbjct: 249 WFSQRESLPEWVADEDSVVRGTGVT-TDASGHATFSLNLPGEEPQDVRLALIGEHHVGNA 307

Query: 328 DSALVLEHLEKLHVV-------------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            ++  + H   + +                R E + + S    +   Y     S+   LK
Sbjct: 308 LASAAIAHACGVGMKSIVTTLSTSSAASRWRMELIDSPSGVTVLNDAYNANPESMRASLK 367

Query: 375 NIRTITSG-------RIIVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSE 423
            + ++  G       R   V G     G+        +G++ + L     IV  D     
Sbjct: 368 TLASMGRGDEESRPRRTFAVLGEMLELGEESISAHSDIGELVVRLNITRTIVVGDG---- 423

Query: 424 DPEKIRAEI-IHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             + I     + G             EA       L   D+++
Sbjct: 424 -AKPIFNAANLEGSWGNEAAWVPTAAEAKDLLNAELAPGDIVL 465


>gi|331696616|ref|YP_004332855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951305|gb|AEA25002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
          Length = 488

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 124/426 (29%), Gaps = 67/426 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF- 59
           M+L D+       L            + ++  V  DSR I  G +F+A+ G + DGH F 
Sbjct: 4   MRLADVAAATGGRLHRASG-------DERVTAVEFDSRAIGPGGLFLALPGERVDGHDFA 56

Query: 60  -----------------------IPQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVV 95
                                  +P A A+ GA   +          +            
Sbjct: 57  AAAVAAGAAGVLAARAVDAPAVVVPPAEARSGAGTYLAEHDPDGAGAAVLAALARLARHN 116

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +             G     ++ VTG+SGK+S    +  +    G +    G  +    
Sbjct: 117 VDALTA--------GGPPGLAVVGVTGSSGKTSTKDLLAAVLAPLGPTVAPPGSFNNELG 168

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK----LIAGSFTN 211
                              +  +     H+ +E S+ G     +  +        G   N
Sbjct: 169 ---------------HPWTALRADASTRHLVLELSARG--PGHIAALCRVAPPRIGVVLN 211

Query: 212 LGRDHIDYHQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           +GR H+    + +A   A  ++            A++ ADD     +  R          
Sbjct: 212 VGRAHLGEFGSPEAIAQAKGELVEALPAGGDGGVAVLNADDPAVIGMAPRTAARLV--SV 269

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               G  +    V +   + +  +     + D    L G   V NAL AA + + +G   
Sbjct: 270 GRSAGATVRAVDVGSEAGRARFRLVSPAGEADVALRLVGTHHVGNALAAAAVALELGATP 329

Query: 330 ALVLEHLEKL-HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVV 387
             V   L     V   R E          +   Y     S+   L  +  +  GR    V
Sbjct: 330 DSVAASLGAAGPVSRWRMEVADRADGVTVVNDAYNANPESMRAALTALTDLGRGRRTWAV 389

Query: 388 FGCGGD 393
            G   +
Sbjct: 390 LGRMAE 395


>gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
 gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
          Length = 449

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 14/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K  A +  N+  DH++ H T +AY  AK R+FE +  +    +  
Sbjct: 159 EVSSFQLE--FIKNFKPKAAAILNITPDHLERHHTMEAYVQAKARIFENMNFENCILL-- 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D      +    N    V     Q    +   +           +           + 
Sbjct: 215 NADDKYTNELTEMANKHTNVCLFSIQKNIDNGAFLDGEELVISYKGNKINICNINELQIK 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A+ L    GI    +   L++   +P R EFV             A  ++
Sbjct: 275 GKQNYANALAASFLAFFSGISLEAIRAALKEFKGLPHRIEFVRKFKDINYYNDSKATNTD 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        + +++   G D+       M K+     ++ ++ +   R E    
Sbjct: 335 ASIKGMEAFD-----KPVILIAGGHDKGIPLSEYMKKVKEHTKELILIGEATERFEKVA- 388

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I  G+       +  +A+  A +     D++++
Sbjct: 389 ----INEGVSNITRAKDMEDAVYKATKFAEAGDIIIL 421


>gi|119512793|ref|ZP_01631862.1| Cyanophycin synthetase [Nodularia spumigena CCY9414]
 gi|119462565|gb|EAW43533.1| Cyanophycin synthetase [Nodularia spumigena CCY9414]
          Length = 876

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  T+G  I V G  GDR      
Sbjct: 701 QTPGRMNL--FNLGKYHALVDYAHNPASYEALGSFVRNWTTGERIGVVGGPGDRRDEDFV 758

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAI 453
            +GK++ D+ D  IV  DD+ R          I  GI        +    +   AI  A+
Sbjct: 759 TLGKLSADIFDYIIVKEDDDTRGRSRGSAANLITQGITEVNPNCRYESILDETAAINKAL 818

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 819 DMAPDNSLVVIL 830


>gi|284799407|ref|ZP_06390126.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
 gi|284797770|gb|EFC53117.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
          Length = 469

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 139/427 (32%), Gaps = 61/427 (14%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLY 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVDKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                  +   +  I  + + T+ V+ K  +
Sbjct: 212 GKAFLCIDSEHVRAILPKISKPYATYGLDDTADI--YATDIENIGAQMKFTVHVQMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QEPFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R      R+++ F      R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDV 461
           D  ++T+     E+P  I A     +   I    ++E I         +  + +L   DV
Sbjct: 389 DALVLTEVYAAGEEP--IAAADSRALARAIRILGKLEPIYCENVADLPQMLLNVLQDGDV 446

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 447 VLNMGAG 453


>gi|256784420|ref|ZP_05522851.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces lividans TK24]
 gi|289768299|ref|ZP_06527677.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
 gi|289698498|gb|EFD65927.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
          Length = 462

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 136/429 (31%), Gaps = 46/429 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A  +VVSSA      +         P++   +    L     
Sbjct: 54  GATVHIGH--AAEHLAADASCVVVSSAIREDNPELVRAAELGIPVVHRSDALAAL----- 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G  P   +AV GT GK++  S +        L          + +   +        
Sbjct: 107 -MNGLRP---IAVAGTHGKTTTTSMLAVSLSELDL-GPSYAIGGDLDAPGSNALHGEGEI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S                                N+  DH   + +     
Sbjct: 162 FVAEADESDRSFHKYA--------------------PEVAIVLNVELDHHANYASMDEI- 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                 F   +      +I AD   ++E+ +R       V     +   + +  V     
Sbjct: 201 YESFETFAGKIVPGGTLVIAADHEGARELTRRLAGRVRTVTYGESEDADVRILSVVPQGL 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +VT+ ++G +  F   +PG    +NA+ A     A+G+ +A +   L     V  R +
Sbjct: 261 KSEVTVVLDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVKRRLQ 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKI 405
             G  + G ++   YAH    +   L+ +R       I+V        R Q     MG  
Sbjct: 321 LKG-EAAGVQVVDSYAHHPTEMTADLEAMRAAVGDARILVLFQPHLFSRTQELGKEMGH- 378

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           AL LAD ++V D  P  EDP      E I               ++  +      M    
Sbjct: 379 ALALADASVVLDIYPAREDPIPGVTSELIVEAARAAGADVTPVHDKDASPALVAGMAKAG 438

Query: 460 DVLVVAGKG 468
           D+++  G G
Sbjct: 439 DLVLTMGAG 447


>gi|55977152|gb|AAV68370.1| unknown [Herminiimonas arsenicoxydans]
          Length = 414

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 122/371 (32%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++    +  I Q +       G T+T   + ++ R+ T        A + L
Sbjct: 33  VAVAGTNGKTTTVRLIAHILQANKHRV---GMTTTDGVYIENQRIDTGDCSGPRSARNVL 89

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL------------GRDHIDYHQTQQA 225
               V     E +  G+ +  L   +      TN+              + +   +    
Sbjct: 90  MHPDVDAAVFETARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRVIV 149

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A              A + A    S     +  N            + + L     +
Sbjct: 150 QNVAPNGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHRAKGHRVVFLDGTSIV 209

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV---- 341
            ++      +   D          FQ+ NA+ A G   ++ +   +VL  L         
Sbjct: 210 ASEGAFEHRIALADIAITHNGLIGFQIENAMAAIGAAWSLNLSWDIVLNGLRTFENSAAT 269

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF        G  +  DY H  +++E +   +  + + R +VV    GDR       
Sbjct: 270 TPGRFNL--FTHHGATVIADYGHNPDAIEALTHAVEAMPAKRRMVVISGAGDRRDDDLRR 327

Query: 402 MGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIE 454
             +I  D  D  I+ +D   R     ++ A +  G+       +  E      AI TA+ 
Sbjct: 328 QTEILGDAFDDVILYEDQCQRGRADGEVLALLRQGLTKAKRAKSIKEIHGEFLAIDTALA 387

Query: 455 MLNKQDVLVVA 465
            L   D+ ++ 
Sbjct: 388 SLQAGDLCLIL 398


>gi|317121120|ref|YP_004101123.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
 gi|315591100|gb|ADU50396.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
          Length = 479

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 19/277 (6%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG--- 264
             TN+  +H+D++    A        F   +      +   D    ++++     A    
Sbjct: 187 VVTNVEPEHLDHYGGDFAQLLQAFARFLRNVRPGGLVVACGDHPVLRQLLADRTPAPGVR 246

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCI 323
                +  +   +  + V A     + T+   G+   +    +PG   V NAL A  + +
Sbjct: 247 VVRYGMEAEDSDLRARDVQAGPEGTRFTVWQGGRPLGEVRLAVPGLHNVLNALAAVAVGL 306

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--S 381
            + +  A     L   H    RF+ +  N  G  +  DYAH    +   L+  R      
Sbjct: 307 ELRVPFAAAAAALASFHGAKRRFQVI-YNRDGILVVDDYAHHPTEIRATLRAARQRQGEG 365

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDN-PRSEDP------EKIRAEI 432
           GR+I VF     R    R +M + A     AD  I+T+   P  E P        +   I
Sbjct: 366 GRVIAVFQPQ--RYSRTRLLMDEFARAFGDADRVILTEIYAPPGERPIPGVSSAVLADRI 423

Query: 433 IHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +E   +R E +   +  +   D+++  G G
Sbjct: 424 AREEGRPVELIASREELVEHLLRTVRPGDLVLTMGAG 460


>gi|306820085|ref|ZP_07453733.1| tetrahydrofolate synthase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551863|gb|EFM39806.1| tetrahydrofolate synthase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 449

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRP 400
             GR E V        + +D AH  ++++ + ++I+      ++I++ G   D+      
Sbjct: 313 WIGRMEIVKA---NPIVMLDGAHNIDAIKQLAQSIKKYFSYKKLILITGILKDKQVD--- 366

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M +I   L+D  I V  D+ R    + +   +           +  EA+  A+   +K 
Sbjct: 367 EMSEILAKLSDKIIAVEVDSVRRTSKDALIESLKKYNKDVEGSDDYKEALDKALSYADKD 426

Query: 460 DVLVVAG 466
           D++++ G
Sbjct: 427 DMILICG 433


>gi|258510191|ref|YP_003183625.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476917|gb|ACV57236.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 881

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 110/368 (29%), Gaps = 25/368 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK++ A  V      +G +                 R  T  P+     LS  
Sbjct: 483 VSITGTNGKTTTARLVAHGFALAGKAVGLTTTGGVYIGGECVCRGDTTGPMSARLVLSNP 542

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +      +E +  G+ +  L       G  TNL  DH+     +     A ++     
Sbjct: 543 RVE---VAVLETARGGIVRGGLAYDVADVGVITNLSLDHVGQDGLETIDDIAFVKALVGE 599

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             ++  A++   D      +     A   ++S   +   +                 +  
Sbjct: 600 CVRDDGAVVLNADDPRVLALAPRFRAPLVLVSQVPENPHVARHVQAGGTAVVASDGVLYE 659

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--------------VVP 343
                  P+ G  Q+   L             A        L                  
Sbjct: 660 WQGGAQRPIIGVAQIPICLGGLARFHVENAALAAAAMRAAGLPRSTVAKALATFLPEQNT 719

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E       G R+ +DY H       + + ++ +   R + V G  GDR        G
Sbjct: 720 GRLEMY-VLPNGARVVLDYGHNPAGFREVGRWLQALPCRRRVGVVGVPGDRANHVVEEAG 778

Query: 404 KIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEML 456
           +      D  IV +D + R   P ++   +   I             +  EA   A+  L
Sbjct: 779 RALAPWFDEFIVKEDADLRGRTPGEVARLLSSSIARACPDKKVEVILDEREAALIAVRGL 838

Query: 457 NKQDVLVV 464
             +DV+ V
Sbjct: 839 GPEDVVCV 846


>gi|300869645|ref|YP_003784516.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
 gi|300687344|gb|ADK30015.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
          Length = 465

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 119/365 (32%), Gaps = 35/365 (9%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           K +             N ++VTGT GK++  + +  I       +  +G      S   +
Sbjct: 110 KVIGEIEFAYNLIPDRNYISVTGTDGKTTTVNLIYSIISSYK-KARLLGNVGNTFSKEVE 168

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           +       +                  +E SS  L+   +D          N+  DH+D 
Sbjct: 169 SIEKDEDIV------------------LELSSFQLET--VDNFHSHISVILNIAEDHLDR 208

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           ++  + YFNAK  + +         I+  D++Y+               +V         
Sbjct: 209 YKDIEDYFNAKKNITKN-QNSNDFLILNYDNSYTNSYYNELIKTKDISFNVLTFSTKNKE 267

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
             +      + +  + E         L G   + N L +   CI   I    + + +   
Sbjct: 268 ANLYYNSEDECLYYNGEKIFSIAKRKLLGMHNIENILASVLACIKDNIPIEYIDKAVNNF 327

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +  R EFV        I    A +      ++  +++    + I++   G ++    +
Sbjct: 328 KSIEHRLEFVKEIDGVRYINDSKATSM---SAVMSALKSFD--KNIILIMGGRNKGIDFK 382

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           P+   I  +     I+T +   SED   +       +   I   +  EA   A ++  K 
Sbjct: 383 PL-KSIIEERVKKLILTGE--ASEDLSSMID-----VSNKIIIKDFTEAFDYAKKIAVKG 434

Query: 460 DVLVV 464
           D +++
Sbjct: 435 DTVLL 439


>gi|239616914|ref|YP_002940236.1| FolC bifunctional protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505745|gb|ACR79232.1| FolC bifunctional protein [Kosmotoga olearia TBF 19.5.1]
          Length = 428

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 101/308 (32%), Gaps = 15/308 (4%)

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T   +  A A  Y   Q V    +E    G +    + +K +    TN   DH+D     
Sbjct: 118 TFFEVVTAMAFVYFKQQKVDFAVLEVG-LGGENDATNVVKPLVSVITNSDYDHMDILGND 176

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KV 282
                +  +    ++ +    +  A+      + K       R+  +G   K+  +   +
Sbjct: 177 ---ITSIAKEDAGIIKENGFVVTAAEGEALDVIKKIGEEKRARIYQIGRDIKYEFVNSDL 233

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEKLHV 341
                  +   S        L           A+ A  +     I+     +    +   
Sbjct: 234 KWQRFNVKGIFSESDNLKIPLLGKYQLINASCAVGAIEILRFYDIEISDESIRKGLENTF 293

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKR 399
            PGRFE V        + +D AH   + + + + +  +   +  +I+V G   D++  K 
Sbjct: 294 WPGRFEIVQDAPM---VVLDGAHNHLAAKRLKEALMEVLEKKDKLILVIGIMKDKEVEK- 349

Query: 400 PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             + K    LA   + T    PR+     +R  ++          +   A+  A+    +
Sbjct: 350 --IVKELAPLAYKVVATSPKTPRATTSHDLREIVVKFNKNISVVEDVETALELALSEAKE 407

Query: 459 QDVLVVAG 466
            D++ V G
Sbjct: 408 NDIVCVTG 415


>gi|317124644|ref|YP_004098756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588732|gb|ADU48029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
          Length = 470

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 64/435 (14%), Positives = 121/435 (27%), Gaps = 45/435 (10%)

Query: 37  SRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           SR    G ++VA +G   DGH + P             +A ++    +        +VVD
Sbjct: 36  SRDCVPGSLYVARLGEFADGHDYAPA----------AVAAGAVAVLGSRPVEGVATVVVD 85

Query: 97  NTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           + +      A  +  + PE  I+ +TG+SGK+S    +  +   +G +   +   +    
Sbjct: 86  DVQTAFGQVARGVVDRAPELRIVGITGSSGKTSTKDLLAAVLSTAGETVAPVNSLNGEIG 145

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                   TP             +       + A   G   +             N+G  
Sbjct: 146 VPLTVCRVTP-------------TTRFLVAEMGARGIGHIDYLTRIAPPDVAIVLNVGTA 192

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           H+    ++     A        +     +I+ ADD     +     +    V        
Sbjct: 193 HVGEFGSRANIA-AAKSELPRAVRPGGLSILNADDPLVAAMAGGLASRVQLVGQSPEAEV 251

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                 +  +       ++  G+    L          +  VAA         + +    
Sbjct: 252 RAEATILDELGRAAYDLVTPRGRARVSLRLSGAHHVGNSLAVAAAALELGLPLAQVAAAL 311

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE-MILKNIRTITSGRIIVVFGCG--- 391
              +     R E          +   Y    +S+   +       T+G    V G     
Sbjct: 312 SGAVPASRWRMEITERPDGVVIVNDAYNANPDSMRAALDALAAIATTGERWAVLGEMLEL 371

Query: 392 -GDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
             DR++     +G  A  L  D  +   D  R  D                   +   A 
Sbjct: 372 GSDRERE-HAAIGSYAAGLGIDHVVAVGDGARVYDAPD-------------WVPDVDAAH 417

Query: 450 RTAIEMLNKQDVLVV 464
                 L   DV+++
Sbjct: 418 DHLASRLRPGDVVLL 432


>gi|313114779|ref|ZP_07800279.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622834|gb|EFQ06289.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 460

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 82/268 (30%), Gaps = 8/268 (2%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        N+  DH+DY+ +      A        L  +      ADD  + +VM    
Sbjct: 182 LTPYLSVVLNIDNDHLDYYGSMGELKFAFK---RFALMTKFMIFANADDKNTMDVMYTLD 238

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                                      +                +PG   +YNAL    +
Sbjct: 239 RRVRTFGIQNDGDYQALNVNEYKPGFFEFDLKEWNKVTGHIRLAVPGYHNIYNALAMCAV 298

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C  +G+      +          RFE  G    G  +  DYAH    L   L   + +  
Sbjct: 299 CRFVGLTVEQCADAALNFKGAGRRFEVYG-ECNGALVVDDYAHHPTELRATLTTAKEMGY 357

Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIPG 438
            R+I V       R +        +   + DI ++T      E  DP    A++   IPG
Sbjct: 358 KRLIAVHQPFTYSRTKMLFNDFVDVL-KIPDITVLTPIMGSREPNDPTITSAKLAAQIPG 416

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   +  EA     +   + D+++  G
Sbjct: 417 SVLVNSLEEAAEWVKQNAREGDLVITLG 444


>gi|298527810|ref|ZP_07015214.1| cyanophycin synthetase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511462|gb|EFI35364.1| cyanophycin synthetase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 888

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 99/354 (27%), Gaps = 21/354 (5%)

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +A  +    ++ G ++           +  D      +   L       +        + 
Sbjct: 500 IAHIMHMSGKKVGYTTTDGIYIQNRLLYKGDCSGPDSARFVLRDPTVDYAVFETARGGMM 559

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL------PKES 242
            +  G D   +  +  +A     L   H     T+     A+                  
Sbjct: 560 RAGLGYDLSDVGVVTNVASDHLGLYGIHTLEQLTRLKCLVAENVQPSGYAVLNADDDYVY 619

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                     +   M   +    +  S G          +        + +     +   
Sbjct: 620 SMQENVSCNTAFFSMNAGNPRIKKHCSSGGTAAVYDEGDIILRKGDWSMLVD-RVINIPL 678

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGGRI 358
            +     FQV N L A        +    +   L+         PGR           ++
Sbjct: 679 TYFGKAAFQVQNVLAACLAAFVQEVKVEEIRLGLQTFAPSSAQLPGRMNI--FEFEKFKV 736

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
            +DYAH  +S+E + + + ++  G    +    GDR        G++A +  D  IV + 
Sbjct: 737 LIDYAHNPSSMEAMGRFVSSLGMGVSTAILAGTGDRRDKDLQDYGRVAAEYFDRIIVWED 796

Query: 418 -DNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D  R  D  K+   I  G          +   +   A+  A++    + ++ +
Sbjct: 797 QDYARGRDSMKVMQLIQEGAASSSKKARVLSILDEDHAVDHALQEALPEAIICI 850


>gi|114330275|ref|YP_746497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
 gi|122314675|sp|Q0AJD9|MURD_NITEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|114307289|gb|ABI58532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
          Length = 470

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 131/395 (33%), Gaps = 33/395 (8%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           AI +S   ++ +          + V+ +    L   A   +      ILA+TG++GK++V
Sbjct: 70  AIAISPGVAIAEPLVQAALQQGVSVIGDIE--LFAIALDQHAPPGTKILAITGSNGKTTV 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           A+ V ++ + +G      G     +  A   R+ T               +      +E 
Sbjct: 128 ATMVGEMARNTGWDVEVAGNIGLAALDALMQRIDTG--------------KWPHLWVLEL 173

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      ++  A    NL  DH+D ++  + Y  AK R+F +        +   D
Sbjct: 174 SSFQLET--TSSLRPNAAVVLNLSEDHLDRYRIIEEYAAAKARIFPDPHNSCVQVLNRED 231

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                   + +      + +  +  +F  L     +   Q  T  ++  +        G 
Sbjct: 232 ARVYAMAHENSKQLTFGLSAPAFDDEFGVLPSGSDLWLAQGTTRLMKVSELAVA----GL 287

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  LC AI +    +L  L     +P R + +   +         +    S 
Sbjct: 288 HNAANALAALALCRAIDLPFEPLLHALHIFKGLPHRMQKIAEFNGVTFYDDSKSTNVGSA 347

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L         R  V+   GGD        + +         ++        D EKI 
Sbjct: 348 VAALNGF------RKNVILIAGGDGKGQDFSPLEQPVSKHTRGVVL-----LGRDAEKIS 396

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I              EA+R +  +  + D +++
Sbjct: 397 QAIQGCNVPVHRVATMDEAVRVSFLLAERGDSVLL 431


>gi|6634664|emb|CAB64530.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+     +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIQEVAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI  A   GA   +  
Sbjct: 54 FIETAFENGAAVTLSD 69


>gi|326387156|ref|ZP_08208766.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208337|gb|EGD59144.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 128/413 (30%), Gaps = 52/413 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A +     ++ +  A      P L   +    L   A+          +AV GTSGKS
Sbjct: 89  ASAAI---EDTVPEVVAARTLGCPRLSRADLLAALFNRAAHP--------IAVGGTSGKS 137

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V           G+  + +       +      +          A + + +       V
Sbjct: 138 TVT----------GMIGWILTVAGRDPTIMNGAVMKNFVAPEAPFASARVGTGTDFVAEV 187

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           + S   +  +R            N+  DH                LF + L +   A I 
Sbjct: 188 DESDGSIALYR-----PAIAVLNNVSLDHKS--------LEELRVLFGDFLARAQAAAIN 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPL 306
           ADD  S  +  RA  A         Q                   I     +   F  P 
Sbjct: 235 ADDPESMALAPRARCALTFGFGETAQISVDPTSIRQGPTTIAATVIDRRSGETHAFTLPQ 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A   C   G+  A  +  LE    +  RF+ VGT   G  +  D+ H  
Sbjct: 295 PGRHNLANALAALAACDLSGVPLAQAVAALESFAGLARRFDIVGTTPSGITVIDDFGHNP 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLA------DIAIVTDD- 418
             +   L  ++    GR+I +F   G    G    MG ++A   A      D  I+T+  
Sbjct: 355 EKVAATLTTLKAH-PGRVIALFQPHG---YGPLRQMGTELAEVFATRLDAGDETILTEPV 410

Query: 419 -----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  RS   E+I   I            R +A      +    D +V+ G
Sbjct: 411 YFGGTVDRSVGSERIVDLITADGGKARHIPTRAQAADAIRALARPGDRIVIMG 463


>gi|325144962|gb|EGC67245.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240013]
          Length = 506

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 150

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 151 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 208

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 209 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 248

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 249 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 307 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 366

Query: 357 RIY----VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R      R+++ F      R +       K+     
Sbjct: 367 GGTALLVDDYGHHPVEMAATLSAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 425

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 426 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485

Query: 464 VAGKG 468
             G G
Sbjct: 486 NMGAG 490


>gi|282897750|ref|ZP_06305749.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
 gi|281197429|gb|EFA72326.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
          Length = 489

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 129/410 (31%), Gaps = 50/410 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +  +    A +    PIL   +    L   A         + +AV GT GK++
Sbjct: 99  VVCSTAINNNNLEYKAALELGCPILHRSDVLAAL--IADY-------HSIAVAGTHGKTT 149

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL    +     ++++  + RL                          
Sbjct: 150 TSSMIGYMLLQAGLDPTIV-VGGEVNAWEGNARLGE--------------------SKYL 188

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L       G  TN+  DH D++ T +                        
Sbjct: 189 VAEADESDGSLVKHTPAIGIITNIELDHPDHYATLEQVVETFQTFARGCQVVVGSI---- 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLP 307
                 ++++     G        QG    +  +    +     +  +GK        L 
Sbjct: 245 ----DCDIVRDRLKPGISYSLDPDQGADYTVTNIDYRADGTTALVWEKGKSLGVLSLQLL 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +   + ++   + + L        RFEF G    G     DYAH  +
Sbjct: 301 GRHNLSNALAAVAVGRVLNLEFGEIAKGLATFEGARRRFEFRG-EVDGITFIDDYAHHPS 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP 425
            +   L   R        VV      R    R    + A     AD+ ++TD     E  
Sbjct: 360 EIRATLAAARLQAKAGQRVVGIFQPHRYSRVRTFFDEFANCFTHADLVVLTDIYSAGEPS 419

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 EK+ AEI    P  I + +     R  +  L   D+ V  G G+
Sbjct: 420 CEQITGEKLAAEIAKQHPQVIYQPSLALIPRVLLSTLRPGDLAVFLGAGN 469


>gi|217971631|ref|YP_002356382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS223]
 gi|217496766|gb|ACK44959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS223]
          Length = 439

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 122/398 (30%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + L         +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVP-------------ALDLLHENADL-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++           
Sbjct: 162 ELSSFQLET--THSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----------- 208

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PL 306
                   +  R          +      +   +                +        L
Sbjct: 209 ----SRAVLFNRDDKLTVPPEPMNQNSFGLAAPEADEWGISDSKIYHGSSEIMPITEVSL 264

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N L A  L   +G+D  ++ +       +  R E VG  +    +    A   
Sbjct: 265 IGSHNHANLLAAMALVDVVGVDKQIMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L  +         ++   GGD        +G     +  +  +  D        
Sbjct: 325 GATVAALDGLSDHLGD---IILIAGGDGKGADFKPLGVALAKVTHLITLGRDG------- 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +I     G +       A+  A E+    D++++
Sbjct: 375 ---KKIAALKDGAVRVETMAAAVTKAAELATSGDIVLL 409


>gi|152998950|ref|YP_001364631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS185]
 gi|151363568|gb|ABS06568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS185]
          Length = 439

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 122/398 (30%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + L         +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVP-------------ALDLLHENADL-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++           
Sbjct: 162 ELSSFQLET--THSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----------- 208

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PL 306
                   +  R          +      +   +                +        L
Sbjct: 209 ----SRAVLFNRDDKLTVPPEPMNQNSFGLAAPEADEWGISDSKIYHGSSEIMPITEVSL 264

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N L A  L   +G+D  ++ +       +  R E VG  +    +    A   
Sbjct: 265 IGSHNHANLLAAMALVDVVGVDKQIMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L  +         ++   GGD        +G     +  +  +  D        
Sbjct: 325 GATVAALDGLSDHLGD---IILIAGGDGKGADFKPLGVALAKVTHLITLGRDG------- 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +I     G +       A+  A E+    D++++
Sbjct: 375 ---KKIAALKDGAVRVETMAAAVTKAAELATSGDIVLL 409


>gi|320335715|ref|YP_004172426.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319757004|gb|ADV68761.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 919

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 127/382 (33%), Gaps = 40/382 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+ +  V  I + +G                      T  P      LS  
Sbjct: 515 IAITGTNGKSTTSRMVAHILKHAGKVVGLTTSNGIYVDGELIMGGDTTGPKSAKVILSDP 574

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH-QTQQAYFNAKMRLFEE 236
               V    +E +  G+ +  L   +   G+  N+  DH+                L  E
Sbjct: 575 ---NVEVAVLETARGGILREGLGFDRADVGAVLNIQPDHLGMKGIETVEDLAYVKSLVVE 631

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI----------- 285
           ++     +++ ADD  +  + ++A  +              HL++               
Sbjct: 632 VVTDTGTSVLNADDPLTVNMQRKAGGSITFFSMQDSNACSEHLQRHIDEGGTAVVREATL 691

Query: 286 -------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS----ALVLE 334
                  +        +  ++            + NAL A G+ +  G++     A +  
Sbjct: 692 LGDELVLYRAGHRYPVIRAREIPATLGGYARVNIANALAAIGVAVGAGVELPVIRAALGS 751

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE--MILKNIRTITSGRIIVVFGCGG 392
                   PGR           R+ +DYAH  + L     L        GR+I VFG  G
Sbjct: 752 FSTSFEQSPGRLNL--YEGHPFRVLLDYAHNPDGLRPLAELVPFLRPAKGRVIGVFGVAG 809

Query: 393 D-RDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRA-----EIIHGI--PGFIEKG 443
           D RD   R  MG I   + D+ I+ +D + R   P +         +  G+         
Sbjct: 810 DRRDVDIR-EMGAILAGMFDLLILREDTDRRGRAPGEGAELTREGALAAGMNPEQIQVIL 868

Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465
           +  +AI  A+      D++V+ 
Sbjct: 869 HEPDAIDAALRAGQAGDLVVIL 890


>gi|306834707|ref|ZP_07467777.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304569411|gb|EFM44906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 153

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             +L        +     +++    DS  +  G +F A+ G +  G  F+       A A
Sbjct: 5   LEKLAQLSHGRVIGDGTVEVSACGLDSASLPEGALFAALPGTRVHGAQFVGD---TKAGA 61

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           ++  +     D         PI+VVD+ R  L   A+ +YG HP   L V G
Sbjct: 62  VLTDAPG--LDHLRQANETRPIIVVDDIRAVLGPIAAEIYG-HPTRDLTVLG 110


>gi|325286923|ref|YP_004262713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
 gi|324322377|gb|ADY29842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
          Length = 444

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 119/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS+        I+ +TG++GK++    V  I +  GL     G      +        
Sbjct: 94  EFASKYTD---ATIIGITGSNGKTTTTMMVNHILKEEGLHVGMAGNIGDSYAKMVSENN- 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                               +  +E SS  LD   +   K      TN+  DH+D +  +
Sbjct: 150 ------------------FDYYVLEISSFQLD--GIVDFKPHIAIITNITPDHLDRYNYE 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        E   ++   I  ADD      +++       +     +     +    
Sbjct: 190 FDNYITSKFRIAENQTEDDYLIYDADDEVLVSWLEKHPVKSKLIPFSLTKQFKEGVC--L 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +     T +   +       L G+  + N + A+     + I  A +   +E      
Sbjct: 248 KNNKIHITTQNNTIEMATDNLALEGKHNLKNTMAASAASKLVNIRKATIRASIENFQGAA 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +    +    A   N+    L+++++       V    G D+    + +M 
Sbjct: 308 HRLESVLKIAHVHYVNDSKATNVNATYYALESMKS-----ATVWIVGGVDKGNDYKSLMP 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  I  +  DN       KI  E  + +   +E  +  EA++ A ++  + D ++
Sbjct: 363 LVREKVKAIICLGVDNS------KIIEEFGNVVDLLVETKSMNEAVKMAYKIGQRGDTVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|256848205|ref|ZP_05553648.1| folylpolyglutamate synthase [Lactobacillus coleohominis 101-4-CHN]
 gi|256714803|gb|EEU29781.1| folylpolyglutamate synthase [Lactobacillus coleohominis 101-4-CHN]
          Length = 419

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 115/391 (29%), Gaps = 24/391 (6%)

Query: 95  VDNTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           V +  KFL  + A+         I+ + GT+GK S    ++Q  Q +G         + +
Sbjct: 19  VKDRIKFLRPILANLGNPDRQFKIIHIAGTNGKGSTGMMLEQTLQYAGYKVGYFSSPALV 78

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI--AGSFTN 211
               Q                    +  +      A+    +   L  I+       +  
Sbjct: 79  DDREQIKINDKLISRQSFVDTYQKIASRLPADITPANITVFEWWTLIMIQYFADQKVYWA 138

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +    +          NA +      +  +   I+                 G   + +G
Sbjct: 139 VIECGLGGRDDATNIINAPLISVITHIALDHTRILGPKITNIAYAKAGIIKTGTHQVFLG 198

Query: 272 YQGKFIHLKKVCAIHNKQQVTIS---------------VEGKDFDFLFPLPGEFQVYNAL 316
              +   +  +      Q V ++                        F L G FQ  N  
Sbjct: 199 PCQQEETIDVIHDYAQSQNVELTLAKEQEIIDGKAAIFFNDTLHWVPFNLLGSFQSQNLG 258

Query: 317 VAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
               +    I        + L  +         +   +    + +D AH  ++   +   
Sbjct: 259 TVISVFQYLIQEGFINSWQPLLTMMKTISITGRMQMIAHHPTVVLDGAHNPDAAHQLYHT 318

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           ++T    +II+V G   D++      M K    L D  I+T  N  S       AE+   
Sbjct: 319 LQTYPGTKIIMVLGFLADKNII---EMCKTYQRLTDKLIITTPNHPSRALP--VAELAAI 373

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +P  I      E +  A E+  + D+++V G
Sbjct: 374 LPQAIVAKTPNEGLAKARELAKRDDLIIVTG 404


>gi|300712111|ref|YP_003737925.1| dihydropteroate synthase [Halalkalicoccus jeotgali B3]
 gi|299125794|gb|ADJ16133.1| dihydropteroate synthase [Halalkalicoccus jeotgali B3]
          Length = 807

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 9/198 (4%)

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +G           H + +VT++  G D +   PL G +Q  NA +AA L   +   S 
Sbjct: 216 GSKGDVRVAYGGRTNHVESRVTLAGPGWDVEARIPLLGAYQARNAGIAAALARRVTSVSG 275

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             LE   +    PGRFE +G         +D AH   + E + + +       + +V G 
Sbjct: 276 TELERGLRNAHWPGRFEVMGEEPL---TVLDGAHNPGACEALAETLAEFEYDDLFLVVGA 332

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEA 448
             ++D      M   AL   D  + T  D  R+ED E +       G+     +G    A
Sbjct: 333 MHEKD---HRGMA-AALPAPDHVVCTQPDLDRAEDREVLARVFAERGVEDVKTRGAVSGA 388

Query: 449 IRTAIEMLNKQDVLVVAG 466
           +  A+     +D ++VAG
Sbjct: 389 LSRALSEAGPEDCVLVAG 406


>gi|160872723|ref|ZP_02062855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
 gi|159121522|gb|EDP46860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
          Length = 441

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/377 (17%), Positives = 128/377 (33%), Gaps = 41/377 (10%)

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
              ++  +T K L              I+A+TG++ K +V S + ++ QR+ L+    G 
Sbjct: 76  IRTIIEQHTLKPLGDI-ELFAQHARAPIIAITGSNAKGTVTSLIGKMIQRAHLNVAVGGN 134

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                             + L                +E SS  L+      ++    S 
Sbjct: 135 IGKP-------------ALDLLNEP------VPDFYVLEISSFQLET--TYSLRPKLASI 173

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+  DH+D H+T  AY NAK R++     +   A+   DD     +         +++S
Sbjct: 174 LNISPDHLDRHKTLTAYINAKQRIY----HQADIALWNRDD-----LNTFPQARTKKIIS 224

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGI 327
            G      H  +    ++ Q+  I+        +  L  +      NA+ A  +  AIG+
Sbjct: 225 FGLTTTTPHAHEFYLYNSHQKNFIAKGHDRLLPVDALFIQGRHNWANAIAALTIGHAIGL 284

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  +L  L +   +P R ++V             A    +    L  +    SG+II++
Sbjct: 285 PTKAMLTALCEFKGLPHRCQWVKEFKGVTWYNDSKATNVGATLAALNGLGPSISGKIILI 344

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              GG        ++           I+   +        +    +          +   
Sbjct: 345 --AGGLSKNADFSLLHNPVKHYVKKIILIGRD------AALLKNTLEKSTAIQTVSDLRH 396

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+  A E   + D++++
Sbjct: 397 AVNLAHETARRGDIVLL 413


>gi|115524121|ref|YP_781032.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
 gi|122296545|sp|Q07PT2|MURC_RHOP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115518068|gb|ABJ06052.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
          Length = 467

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 139/421 (33%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  AGADVVVVSTAIKRDNPELLAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDA-GEFDPTVINGGIINAYGTNARLGAGEWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T +A  NA  R F E +P    
Sbjct: 168 -------------GTFLKLPADVAIVTNVDPEHLDHFKTFEAVQNA-FRDFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEG 297
           A++  D    + ++ +  +          Q     L               +    +   
Sbjct: 214 AVMCIDHPVVQALVGKIEDRRIITYGENPQADVRLLDLKPNGGASTFKVAFRDRKANTAH 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D   P+PG     NA  A  +   +G+    + + L     V  RF   G +  G  
Sbjct: 274 EIADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAGFGGVRRRFTKTG-DWNGVS 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DY H    +  +LK  R  T  ++I V      R    + +  +       AD  IV
Sbjct: 333 IIDDYGHHPVEIAAVLKAARESTKTKVIAVV--QPHRFTRLQSLFEEFCTCFNDADAVIV 390

Query: 416 TDDNPRSEDPE-KIRAE-----IIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
            +  P  E P   I  +     +       +       A+   +  +    D +V+ G G
Sbjct: 391 AEVYPAGEAPIPGIDRDNFVLGLRAHGHREVIPLQESAALAGVVHSIAKPGDYVVLLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|260437509|ref|ZP_05791325.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
 gi|292810142|gb|EFF69347.1| UDP-N-acetylmuramate--alanine ligase [Butyrivibrio crossotus DSM
           2876]
          Length = 458

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 134/400 (33%), Gaps = 41/400 (10%)

Query: 78  SLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++ +A    N P++    TR + L    +       +  + V+GT GK++  S + +I
Sbjct: 82  DNEELAAARAKNIPVI----TRAELLGEIMTNY-----KTAVGVSGTHGKTTTTSMLTEI 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G     +     + S   + R+                ++   + +   S      
Sbjct: 133 LV-NGSLDPTVSVGGILPSIHGNLRIGHSD---------NFVTEACEYTNSFLS------ 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                         N+  DH+D+ +      N+    +  LLP+    +I  D    +E+
Sbjct: 177 -----FFPTIEIILNIEEDHLDFFKDINDIRNS-FGRYVRLLPENGLLVINNDIDNVEEI 230

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K A      V                         I            +PG   VYN+L
Sbjct: 231 YKNAACPVITVGKTPDADYTADNISFDEFGCPSYDLIRQGNTIGRIALSVPGIHNVYNSL 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  + I +GID + +++ L+  H    RF+  G    G  I  DYAH    +   + + 
Sbjct: 291 AAIAVAIHLGIDISTIIDSLKGFHGTDRRFQKKG-TVNGFTIIDDYAHHPAEINATINSA 349

Query: 377 RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIR 429
                 +++++F      R +        +    AD+ I+ D     E        + I 
Sbjct: 350 MNYPHKKLVIIFQPHTYTRTKAFLKDFADVL-KRADLVILPDIYAARETDTLGISSKDIA 408

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             I       I + +  +  +  ++   K D+++  G G+
Sbjct: 409 DLINAAGTECIYEPDFDKICQIILDRCRKGDLVITMGAGN 448


>gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
 gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
          Length = 451

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 133/360 (36%), Gaps = 42/360 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A  L GK    I+A+TG++GK++V S V  +C+  GL +   G   T    A ++R   
Sbjct: 107 LAHELSGKR-NKIIAITGSNGKTTVTSLVGHLCRECGLDTVVAGNIGTPVLEAYEDRQ-- 163

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                          Q      +E SS  L+    D +   A +  N+  DH++ +    
Sbjct: 164 --------------EQSADVWVLELSSFQLE--NTDHLNAAAAAVLNISEDHLNRYDDLL 207

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y +AK ++F     +   A     D      MKR+     R         +        
Sbjct: 208 DYAHAKDKIFRGSGVQVINA-----DDALCRAMKRSGREVRRFSLQQETDYWFDAASGYL 262

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            H  + +  + +        PL G     N L A  LC AIG+    +L H+     +P 
Sbjct: 263 KHGAETLIAAADI-------PLQGLHNAANVLAALALCEAIGLPREQLLRHVRTFKGLPH 315

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G  +    I         + E  +  +++      + +   G  + Q   P+   
Sbjct: 316 RVEKIGEKNGVVFIDDSKGTNVGATEAAIAGLQS-----PLFLIAGGQGKGQDFTPL-KN 369

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    A   ++       ED  +IR ++       ++  +  EA++TA  +    D++++
Sbjct: 370 VLPGKARAVLLI-----GEDAPQIRRDLAGCGVEMMDCASLQEAVQTAYRLAEPGDIVLL 424


>gi|328955353|ref|YP_004372686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
 gi|328455677|gb|AEB06871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
          Length = 478

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 79/467 (16%), Positives = 153/467 (32%), Gaps = 38/467 (8%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
                 +R       DSR + +  +FVA  G   DG+ F   A+  GA A+V++   S +
Sbjct: 17  LCAGPSDRVCRGCVIDSRDVGSDAVFVAFPGEHVDGNDFAIAAVQAGAGAVVLTREPSRE 76

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
             SA  +    +   ++  +FL   A     +    ++ +TG+ GK++    V  +    
Sbjct: 77  LCSAADQRGCAVAYTNDAERFLLALAHDYRSRLGCPVVGITGSIGKTTTKDMVAALLSTR 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                 IG      +      LT  S                  + +  S+ G  +    
Sbjct: 137 YRVHATIGN----RNNLIGMPLTVLSAPE---------DTQALILEMGMSASGEIERLSR 183

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD-------DAYS 253
                    T +G  HI    ++ A   AK  +   ++P  +P    +        D ++
Sbjct: 184 CAAPTHAIITRIGTSHIGMLGSRDAIARAKAEIVSGMIPWSAPECERSPLLVLSSEDDFT 243

Query: 254 KEVMKRAHNAGCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             +  R        +    +       +   ++             +G         PG 
Sbjct: 244 SFISDRFAEPAGVRIALAGTRADADVTVRRCRLDDQGCASFELSFRDGCQLKANLAAPGA 303

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V +A +AA L   +G+    ++     L +   R +    +     I   Y  +  S+
Sbjct: 304 HAVQDAALAAALAYDLGVSPRDMIAAFGALAITSHRQQIRLASGGAKIIDDSYNASPESM 363

Query: 370 -EMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSED 424
              +   +    + R I V G     G+R +    ++G   A    D+ +        E 
Sbjct: 364 AAGLDLLLALSGARRRIAVLGEMGELGERSERMHALVGAYAAAKQLDLLVCV----GHEA 419

Query: 425 PEKIRAEI-IHGIPGF-IEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              +     + G+P   IE  +   A+       L + D+++V  KG
Sbjct: 420 ARTMADAARLMGMPAHRIEIASSAHAVLDRFGSGLGRGDLVLV--KG 464


>gi|297156474|gb|ADI06186.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 476

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 146/436 (33%), Gaps = 54/436 (12%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH    + +A  A ++VVSSA    +    A      P++   +    L   A 
Sbjct: 56  GVTVHIGH--AAEHLAADATSVVVSSAIRADNAELTAAAERGIPVIHRSDALAGLMDGAR 113

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                     +AV GT GK++  S +          +  +       S+A    L  P  
Sbjct: 114 P---------IAVAGTHGKTTTTSML----------AVSLTTLGLDPSYAIGGDLDAPGS 154

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +       +  +                    N+  DH   + + +   
Sbjct: 155 -----------NAQHGGGEIFVAEADESDRSFHKYAPEVAIILNVELDHHANYASMEEI- 202

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAI 285
           +   + F E +      ++ AD   ++E+  R         +      G  + +  +   
Sbjct: 203 HESFQTFVERIRPGGTLVVSADHPGARELTGRVTGREGLRVLTYGEDPGADVRVLDIAQR 262

Query: 286 HNKQQVTISVEG----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               +VT+ +       +  F   +PG     NA+ A     A+G+ +  +   L     
Sbjct: 263 GLTSEVTVLLPDALGGGELTFTVSVPGRHYALNAVAALTAGAALGVPARELAPALGSYTG 322

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKR 399
           V  R +  G  + G ++   YAH    +   L+ IR     GR++VVF      R +   
Sbjct: 323 VRRRLQLKGVAA-GVQVIDSYAHHPTEISADLEAIRGGAGDGRVLVVFQPHLFSRTRELG 381

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
             MG+ AL LAD ++V D  P  EDP        I           + + +R  A+   I
Sbjct: 382 VEMGQ-ALALADASVVLDIYPAREDPVPGITSALIIDAAARHGADVVAEHDR-TAVPELI 439

Query: 454 E-MLNKQDVLVVAGKG 468
             M    D+++  G G
Sbjct: 440 AGMAKPGDLVLTMGAG 455


>gi|295102128|emb|CBK99673.1| UDP-N-acetylmuramate--L-alanine ligase [Faecalibacterium
           prausnitzii L2-6]
          Length = 461

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 127/403 (31%), Gaps = 35/403 (8%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S+A +  +      ++  I  V+  R  L  + SRLY +     + V+GT GK
Sbjct: 74  GADLVVYSAAIAKDNVELNAAASYGITTVE--RSVLLGYVSRLYKQ----SICVSGTHGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +    + +G                  + +       +           +   +
Sbjct: 128 TTTTSMITTALELAGRD---------------PSAVIGGKLPLIHGYGKAGKGDDIVIEA 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            E S   L       +        N+  DH+DY+ +      A        L  +     
Sbjct: 173 CEFSETFLK------LTPYLSVVLNIDNDHLDYYGSMGELKFAFK---RFALMTQFMIFA 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD  + +VM       C               +       +                +
Sbjct: 224 NADDKNTMDVMYTLDRRVCTFGIDNDGDYQAINVQEYKPGFFEFDLKEWSKVTGHIRLAV 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   +YNAL    +C   G+                 RFE  G    G  +  DYAH  
Sbjct: 284 PGRHNIYNALAMCAVCRFAGLTVEQCAAAAASFKGAGRRFEVYG-ECNGAVVVDDYAHHP 342

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE-- 423
             L   L   + +   R+I V       R +        +   + D+A++T      E  
Sbjct: 343 TELRATLNTAKELGYKRLIAVHQPFTYSRTKMLFNDFVDVL-KIPDVAVITPIMGSREPN 401

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DP    A++   IPG +   +   A     +   + D+++  G
Sbjct: 402 DPTITSAKLAAQIPGSVLVDSLEAAADWVKQNAREGDLVITLG 444


>gi|146295400|ref|YP_001179171.1| UDP-N-acetylmuramate--alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166222969|sp|A4XGE5|MURC_CALS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145408976|gb|ABP65980.1| UDP-N-acetylmuramate--L-alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 455

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 141/405 (34%), Gaps = 36/405 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+ +A   +D    +++    L V    +FL +          +N++AV+GT GK++  
Sbjct: 63  IVIFTAAIPKDNPELVKAKRLGLKVYERAEFLGMLMKDY-----KNVIAVSGTHGKTTTT 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I +++ L+   +   + +     +  + +   + +       S            
Sbjct: 118 SMIGYILKKALLNPTVL-VGAFVKQLGGNFCIGSSEYLVVEACEYVDSFLNFN------- 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G   N+  DH+DY +  ++  ++  R F   +P+    +   DD
Sbjct: 170 -------------PSIGVILNIDNDHLDYFKDIESIKDS-FRKFALKIPQNGFIVANLDD 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                V            +      +      C  + +  V              +PG  
Sbjct: 216 ENVYSVASYLKQNVIYFSTKTKADFWADNITSCNGYYEFDVVNKDFKHLCHIKLNIPGFH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            VYN+L A  +   +GID   + E + +      R E +G    G  +Y DYAH    +E
Sbjct: 276 NVYNSLAAFSVAYTLGIDKNTIKEAIFEFCGASRRLEKLG-KIDGIVLYDDYAHHPTEIE 334

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTDDNPRSE------ 423
             L+ ++ +   ++IV+F       + K  + G +    LAD  IVTD     E      
Sbjct: 335 ATLRTLKKLAKEKVIVIF-QPHTFSRLKSLMEGFVKSLSLADKVIVTDVYAAREKNVYGV 393

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             + +  ++              +     +    K D++   G G
Sbjct: 394 SSKDLYEKLKKAGVDCEYIDQFEKIAEYVLNTAQKGDIVATIGAG 438


>gi|288575843|ref|ZP_05977704.2| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
 gi|288566858|gb|EFC88418.1| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
          Length = 469

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298
             A +  D  + + ++ +                  +   +  +  + + T+ V+ K   
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTADI--YATDIENVGAQMKFTVHVQMKGSE 269

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     +   L     V  RF+  G      
Sbjct: 270 QAPFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGFEGVGRRFQKYGEIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R      R+++ F      R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   DV++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|168208619|ref|ZP_02634244.1| FolC bifunctional protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170712998|gb|EDT25180.1| FolC bifunctional protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 440

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 130/388 (33%), Gaps = 41/388 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-TPSPIYL 170
                 + + GT+GK S  + +  + + +G                +            L
Sbjct: 36  HKDTKFIHIGGTNGKGSTTAMISSVLKEAGFKVGMYTSPYLEEFEERIQINGENIDKDDL 95

Query: 171 AKALSYLSSQGVTHVSVEASSH--------------------------GLDQHRLDGIKL 204
           A  +  +       + +   S                           GL   RLD   +
Sbjct: 96  AILMGDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLG-GRLDATNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +      L    +D+            +    ++    P I Y  +  + EV+K   N  
Sbjct: 155 VLPEVVVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVPVISYPQEEKAIEVIKERCNEL 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              L V       ++  +    + Q++ +S+E +       L G+ QV N LVA    I 
Sbjct: 215 GCNLEVVDTEDIRNII-IDKEKHVQKIEVSLEDEILKIDLGLLGDHQVKNFLVALKTLIK 273

Query: 325 IGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +  +    S   ++   K     GR E +   +    + +D AH  + +  +  +I    
Sbjct: 274 LRNNGVNISNEAIKEGFKKVRWIGRMEVL---NENPLVVIDGAHNIDGIRNLRNSIDKYF 330

Query: 381 SGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG 438
           + + I ++ G  GD+       M +      D  ++ + +  R+ED E +  ++   +  
Sbjct: 331 NFKNITLILGVLGDKQVD---EMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKE 387

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  +  EA   A  + N+ D+L++ G
Sbjct: 388 VFKFKDYKEAYNKAYSLTNEDDLLLICG 415


>gi|88608103|ref|YP_506362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
 gi|88600272|gb|ABD45740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
          Length = 325

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 8/152 (5%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE--VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           L+  D    I +  +      +  I+    S +   +  G IFV       D   FI  A
Sbjct: 2   LLTADLIRSILKAELICEYQAKIDISRSKFSMNCEKVGKGEIFVIADAKNHDIPCFIETA 61

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
              GA AI+     +            PI+ VD+  + +   A+ L   +   ++ +TG+
Sbjct: 62  YLNGASAIITKKDIACPKIP------IPIIRVDDPLRAMEKLAAILIRNYQPTVIGITGS 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           S   +    V  +         + G  +    
Sbjct: 116 SKTLTKNLIVTLLKNYGKTCYNEDGTGNFAGF 147


>gi|121606305|ref|YP_983634.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|166224714|sp|A1VST5|MURC_POLNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120595274|gb|ABM38713.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 478

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 137/433 (31%), Gaps = 57/433 (13%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A A     +A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAANLVDVDAVVTSTAVHADNPEVLAAREKHIPVVPRAL-MLAELMRFKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +    G   +F IG    ++S   + +L +   I +    S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANAKLGSGDYIVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH++ +             F 
Sbjct: 165 DASFLN--------------------LLPVMAVVTNIDADHMETYGHDFGNLKKAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI+  DD   ++++               +   +    V A+  +   T   
Sbjct: 205 RRMPFYGTAILCTDDPVVRQIVPEMSCPITSYGL--NEEAQVRAINVRAVGAQMHFTAQR 262

Query: 296 EGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
                  D D +  L G+  V NAL A  + + + +  A V + L     V  RF+  G 
Sbjct: 263 RNGVKLPDLDVVLNLAGQHNVLNALAAIAVAVELNVPDAAVQKALSDFTGVGRRFQSYGE 322

Query: 351 ---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKI 405
               +     +  DY H    +   L   R    GR +V+        + +       K+
Sbjct: 323 LPARDGGRFTVIEDYGHHPVEVAATLSAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVKV 382

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEM 455
               AD  ++ +     E P        +   +               +  +AI   ++ 
Sbjct: 383 ISSHADAVLLAEVYAAGETPIVAADGRSLARALRVAGKVEPVFVDSIHDMPQAI---VDA 439

Query: 456 LNKQDVLVVAGKG 468
               D+++  G G
Sbjct: 440 AQDGDIVMCMGAG 452


>gi|289166080|ref|YP_003456218.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
 gi|288859253|emb|CBJ13187.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
          Length = 469

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 138/429 (32%), Gaps = 54/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGK 112
           GH    + I +GA+ +V SSA    +           P++     R   L+      +G 
Sbjct: 66  GHK--AEHI-KGADVVVRSSAVEWNNPEIVAAREQMIPVI----PRAAMLAELMRFRHG- 117

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +AV GT GK++  S V  +    G   SF IG                 + + + 
Sbjct: 118 -----IAVAGTHGKTTTTSLVSSVLAEGGLDPSFVIG--------------GKLNSLGIN 158

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L       V     +AS   L          +    TN+  DH+  ++          
Sbjct: 159 AQLGQSPYFVVEADESDASFLFLK--------PMMAIVTNIDADHMGTYENNFEKLRTTF 210

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP    A++  DD   ++++                           + ++  V
Sbjct: 211 LEFLHHLPFYGSAVVCIDDPEVRKILPFIERPTLTYGFTEEAHYRAIDWTQNELISEFTV 270

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       F  PG   V NAL +  +   +G+D   ++  LEK   V  RF+ +G 
Sbjct: 271 IRPKSYSPLKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGE 330

Query: 352 NSRGGRI---YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGG-DRDQGKRPIMGKIA 406
                       DY H    +   +   R +    R++ VF      R Q  +     + 
Sbjct: 331 KKFEKGSALVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVFQPHRYTRTQELQEQFVDVL 390

Query: 407 LDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQ 459
             LAD   + D     E      + E +  +I +          R   ++  ++    + 
Sbjct: 391 S-LADELFLFDIYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERS--LKKNLDQSVKEG 447

Query: 460 DVLVVAGKG 468
           DV+++ G G
Sbjct: 448 DVILIQGAG 456


>gi|270159084|ref|ZP_06187740.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
 gi|269987423|gb|EEZ93678.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
          Length = 458

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 138/429 (32%), Gaps = 54/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGK 112
           GH    + I +GA+ +V SSA    +           P++     R   L+      +G 
Sbjct: 55  GHK--AEHI-KGADVVVRSSAVEWNNPEIVAAREQMIPVI----PRAAMLAELMRFRHG- 106

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +AV GT GK++  S V  +    G   SF IG                 + + + 
Sbjct: 107 -----IAVAGTHGKTTTTSLVSSVLAEGGLDPSFVIG--------------GKLNSLGIN 147

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             L       V     +AS   L          +    TN+  DH+  ++          
Sbjct: 148 AQLGQSPYFVVEADESDASFLFLK--------PMMAIVTNIDADHMGTYENNFEKLRTTF 199

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP    A++  DD   ++++                           + ++  V
Sbjct: 200 LEFLHHLPFYGSAVVCIDDPEVRKILPFIERPTLTYGFTEEAHYRAIDWTQNELISEFTV 259

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       F  PG   V NAL +  +   +G+D   ++  LEK   V  RF+ +G 
Sbjct: 260 IRPKSYSPLKIQFQYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGE 319

Query: 352 NSRGGRI---YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGG-DRDQGKRPIMGKIA 406
                       DY H    +   +   R +    R++ VF      R Q  +     + 
Sbjct: 320 KKFEKGSALVVDDYGHHPQEILSTIDAFRHVWPNKRLVHVFQPHRYTRTQELQEQFVDVL 379

Query: 407 LDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQ 459
             LAD   + D     E      + E +  +I +          R   ++  ++    + 
Sbjct: 380 S-LADELFLFDIYSAGESEIPGVNSESLAEKIRNNDKKVTLVDERS--LKKNLDQSVKEG 436

Query: 460 DVLVVAGKG 468
           DV+++ G G
Sbjct: 437 DVILIQGAG 445


>gi|269468108|gb|EEZ79818.1| UDP-N-acetylmuramate-alanine ligase [uncultured SUP05 cluster
           bacterium]
          Length = 471

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 133/411 (32%), Gaps = 41/411 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VVSSA   ++          I +V    + LS      +G      +AV GT GK++ 
Sbjct: 74  AVVVSSAIDEKNPELVKARELNIPIVPRA-EMLSELMRFRFG------IAVAGTHGKTTT 126

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I   + L    I     ++S   + +L     +      S  S           
Sbjct: 127 TSLIAHILSEARLDPTYI-IGGILNSSGINAKLGESDYLIAEADESDASFLH-------- 177

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       ++ +    TN+ +DH+  +             F   LP     ++  D
Sbjct: 178 ------------LQPMLSVITNIDQDHMSTYGNDYQNLKDAFVSFTSNLPFYGACVLCMD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  + ++M   H                   K   +     V      K F     L G+
Sbjct: 226 DVGATDIMNNIHRPLITYGFDSKVDIRAKNIKQHGMQMHFDVVCDKYNKPFSVELNLIGK 285

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTS 366
             + N L A  +   + I  + +   L     V  R E  GT +   +   ++ DY H  
Sbjct: 286 HNILNTLAAIAIACELKIKVSAIQSALNNFSGVARRLEHHGTLNINNKQVLLFDDYGHHP 345

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
           N +  + ++++     + +VV        R +       ++    AD  I+ +  P +E 
Sbjct: 346 NEINAVFESLQNTYPNKRLVVIFQPHRYTRTRDLFDDFSRVLSK-ADALILLEIYPANEL 404

Query: 424 -----DPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +   + + I        +   N  E +     ++   DV++  G G
Sbjct: 405 SIARINSSSLASAIRKRSSLDPVVIKNSKEILTVLPNIIKNNDVVLTLGAG 455


>gi|255066169|ref|ZP_05318024.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
 gi|255049714|gb|EET45178.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
          Length = 469

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                 I+   + ++  + + T+ V+ K  +
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGL--DDAADIYATDIESVGAQMKFTVHVQMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     +   L     V  RF+  G      
Sbjct: 270 QAPFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQRGLLGFEGVGRRFQKYGDMKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R      R+++ F      R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|322421361|ref|YP_004200584.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18]
 gi|320127748|gb|ADW15308.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M18]
          Length = 461

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 143/426 (33%), Gaps = 45/426 (10%)

Query: 56  GHLFIPQAIAQGAEA-IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           G +FI  A    A+A +VV S+   +D    + ++  ++ V    + L+      YG   
Sbjct: 51  GEIFIGHAAENVAQADVVVISSAVHEDNPEVVEAHLRLIPVIPRAEMLAELMRMKYG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S V  +  + G+    +     ++S   + RL           +
Sbjct: 108 ---VAVAGTHGKTTTTSMVATLLAKGGIDPTMV-IGGRLNSLGSNARLGQG-----QFLV 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + + +                      TN+  DH+D++   +         F
Sbjct: 159 AEADESDGSFLLLS---------------PTIAVVTNIDADHLDFYSGIE----EIKDTF 199

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTI 293
            E + K     +      +  +         R  S G   +       V           
Sbjct: 200 VEFINKVPFYGLAVLCLDNGNIADILPRVKKRFTSYGLSAQADFRATDVRLSGFSTSFVA 259

Query: 294 SVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +  K  +  F +PG   V NAL A  + + + I    + E  +    V  RF   G  
Sbjct: 260 HHKGVKLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFKAFGGVGRRFSLKG-E 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
             G  +  DY H    +   L   +      R++VVF      R +       K A   A
Sbjct: 319 VNGIMVVDDYGHHPTEIRATLAAAKAGFAENRLVVVFQPHRYSRTKELFEDFVK-AFHDA 377

Query: 411 DIAIVTDDNPRSEDP-EKIRAEIIH------GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+ I+TD     E P E + AE++       G         R +       +L   D+L+
Sbjct: 378 DVLILTDIYAAGEAPIEGVTAEMLAARVRRHGQKDVTWLPERDKLCEHLERVLAPGDLLL 437

Query: 464 VAGKGH 469
             G G+
Sbjct: 438 TLGAGN 443


>gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 458

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 141/405 (34%), Gaps = 43/405 (10%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +  + +VVS    L      +     I V+          A R      +NI+A+
Sbjct: 64  DEAVDK-VQLVVVSPGVPLSKRPLVLAHKKGIEVIGEI-----ELAYRFCK--SKNIVAI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  + V +I ++        G          +                     
Sbjct: 116 TGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPFIDTIETS------------------S 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +E SS  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE +   
Sbjct: 158 ENTIFVLEISSFQLET--IKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEM 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               + Y ++     +     N      +       + ++K       +  T  +  KD 
Sbjct: 216 GYTVLNYDNNITRDLIGLAKGNVIVFSKNKCQFKNMVFVEKDTIYFTFEGKTQEIMKKDE 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   +PGE  + NAL A    +  GI+   + + L+    V  R EFV   +       
Sbjct: 276 IF---IPGEHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFVAEINGIKFYND 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                +++ E  L+   +      I++   G D+ +        +         +     
Sbjct: 333 SKGTNTDAAEKALRAFES-----PIILIAGGYDKGESF-EKFASLVAKKVKKVFL----- 381

Query: 421 RSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +   KI +E+   G   F       EA+R + E     D++++
Sbjct: 382 LGQTKHKIASELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLL 426


>gi|169824784|ref|YP_001692395.1| folylpolyglutamate synthase [Finegoldia magna ATCC 29328]
 gi|167831589|dbj|BAG08505.1| folylpolyglutamate synthase [Finegoldia magna ATCC 29328]
          Length = 415

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 125/381 (32%), Gaps = 39/381 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--------------- 156
           +    I+ V GT+GK S ++F+ Q  +  G  +        I+ +               
Sbjct: 36  EKSFKIIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFM 95

Query: 157 -----------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                        D +++T   I L  A+ Y + Q   +V +E    G    RLD     
Sbjct: 96  RIFEIIKDTIEKNDIKVSTFEFITL-CAIYYFAEQKCEYVVLEVGMGG----RLDATNAT 150

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  ++          Q+   N    +  E                 + V+        
Sbjct: 151 DETLLSVIT--KIGLDHQEYLGNTLEEIAYEKACIMKQNGRCVVYDQQESVLDVFREVAE 208

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +  Y   F   K +           S + K+      L G +Q++NA +A      +
Sbjct: 209 ERNNKLYICDFDEAKNIEINATHN----SFDWKNLHIETRLVGRYQLFNAQLALTAIDVL 264

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
             +  L  E +                     +  D  H ++ ++ +  +I ++   + I
Sbjct: 265 RDELDLSDEDIINGFKNAYIPARFDVIRHNPTVIYDGGHNADGVKALKSSIESVFGDKKI 324

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            VF  G  +D+     +  I  +       T D+PR+   E ++ +I       + K N 
Sbjct: 325 -VFVYGVLKDKDYNDEIKLIHENAKAFVTFTPDSPRALKAEDLKKQIEVYSDNVVAKSNV 383

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A+  AIE     DV+++ G
Sbjct: 384 NDAVDYAIEHFK-DDVIIIFG 403


>gi|154498031|ref|ZP_02036409.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
 gi|150273021|gb|EDN00178.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
          Length = 461

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 110/362 (30%), Gaps = 43/362 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + ++ +++G + +  G           N        
Sbjct: 110 FFQVCPCEIIAVTGSDGKTTTTTIISELLKKAGYNVYVGGNIGKPLLAETPN-------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TN+  +H+D H++ + Y  
Sbjct: 162 ----------MEPDDMVVLELSSFQL---MTMDMSPDIAVVTNVAPNHLDVHKSMEEYVE 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F     +      + ++       K   N     +    +        V      
Sbjct: 209 AKENIFAHQSTENLAVFNWDNEITRDFSKKAPGNV----MCFSRREMLERGIYVKDDAIW 264

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                            LPG   V N + A      +  D   +         V  R E 
Sbjct: 265 CADRDGHRKVLLLSDILLPGNHNVENYMAAIAAVNGLVSD-ETIRLFARSFGGVEHRIEL 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T           A +       L++          V+   GG        ++G   ++
Sbjct: 324 VRTVDGVRYYNDSIASSPTRTIAGLRSFEE------KVILIAGGYDKHIPFDVLGPEIIE 377

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHG------IPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                I+T D       EKIRA + +        P      +  +A+  A  M    DV+
Sbjct: 378 HVKELILTGD-----TAEKIRAAVENAPGYNGSNPPIRMYQDFEQAVLAAHSMAQPGDVV 432

Query: 463 VV 464
           ++
Sbjct: 433 IL 434


>gi|6634634|emb|CAB64510.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+     +      + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI  A   GA   +  
Sbjct: 54 FIETAFENGAAVTLSD 69


>gi|89900108|ref|YP_522579.1| cyanophycin synthetase [Rhodoferax ferrireducens T118]
 gi|89344845|gb|ABD69048.1| Cyanophycin synthetase [Rhodoferax ferrireducens T118]
          Length = 858

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 132/369 (35%), Gaps = 24/369 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++    +  +  ++GL     G T+T   +    R+ T        A + L
Sbjct: 473 VAVTGTNGKTTTVRLISHLLAQNGLRV---GMTNTDGVYIAGQRIDTGDCSGPKSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
               V    +E +  G+ +  L   +      TN+G        + T         R+  
Sbjct: 530 QHPDVDAAVLETARGGMLREGLAFDRCDVAVVTNVGSGDHLGLNYITTVEDLAVLKRVIV 589

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----------IHLKKVCAI 285
           + +  +  A++ A D     + +    +        +              ++++    +
Sbjct: 590 QNIASDGVAVLNAADPIVVSMARHCSASIIFFAMDRHHPVMATHLAQGRRAVYVEGDHLV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             + +V   +   D          FQ+ N + +A    A+G+    +   L         
Sbjct: 650 AAEGKVQHQMALSDIPISRRGTIGFQIENVMASAAAVWALGVGWETIKLGLASFINNNDN 709

Query: 346 F--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
               F   + RG  +  DY H  +++  +++ + ++ S R  VV    GDR         
Sbjct: 710 ALGRFNLFSYRGATVIADYGHNPDAIAALVQAVASMPSKRRTVVISGAGDRRDEDIRQQT 769

Query: 404 KIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIEML 456
           +I  +  D  ++  D   R     ++ A +  G+       +  E      AI TA++ L
Sbjct: 770 EILGNAFDNVVLYQDQCQRGRADGEVLALLREGLAHATRTESIAEIQGEFLAIDTAMDTL 829

Query: 457 NKQDVLVVA 465
            + D+ ++ 
Sbjct: 830 GEGDLCLIL 838


>gi|303235010|ref|ZP_07321634.1| bifunctional protein FolC [Finegoldia magna BVS033A4]
 gi|302493865|gb|EFL53647.1| bifunctional protein FolC [Finegoldia magna BVS033A4]
          Length = 415

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 123/370 (33%), Gaps = 17/370 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF---------AQDNRL 162
           +    I+ V GT+GK S ++F+ Q  +  G  +        I+ +         ++++ +
Sbjct: 36  EKSFKIIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFM 95

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEA----SSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                I      + +       +++ A    +    +   L+         TN   + + 
Sbjct: 96  RIFEIIKNTIEENDIKVSTFEFITLCAIYYFAEQKCEYVVLEVGMGGRLDATNATDETLL 155

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              T+    + +             A I   +       ++             +   ++
Sbjct: 156 SVITKIGLDHQEYLGNTLEEIAYEKACIMKQNGRCVVYNQQESVLDVFREVAEERNNKLY 215

Query: 279 LKKVCAIHNKQQVTIS--VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +       N +        + K+      L G +Q++NA +A      +  +  L  E +
Sbjct: 216 ICDFDEAKNIEINATHNSFDWKNLHIETRLVGRYQLFNAQLALTAIDVLRDELDLSDEDI 275

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                                +  D  H ++ ++ +  +I ++   + I VF  G  +D+
Sbjct: 276 INGFKNAYIPARFDVIRHNPTVIYDGGHNADGVKALKSSIESVFGDKKI-VFVYGVLKDK 334

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                +  I  +       T D+PR+   E ++ +I       + K N  +A+  AIE  
Sbjct: 335 DYNDEIKLIHENAKAFVTFTPDSPRALKAEDLKKQIEVYSDNVVAKSNVNDAVDYAIEHF 394

Query: 457 NKQDVLVVAG 466
              DV+++ G
Sbjct: 395 K-DDVIIIFG 403


>gi|83592285|ref|YP_426037.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
 gi|109892732|sp|Q2RVU5|MURC_RHORT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83575199|gb|ABC21750.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
          Length = 481

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 137/431 (31%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGK 112
           GH     A   G A+ +V+SSA    +          + VV   R+   L          
Sbjct: 59  GHK----AANLGDAQVVVISSAVKASNPEVMDARARFLPVV---RRAEMLGELMRL---- 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +  +AV GT GK++  S V Q+   +GL    I     +++   +  L T        
Sbjct: 108 --KWSIAVAGTHGKTTTTSLVAQLLDAAGLDPTVI-NGGILNARGTNAYLGTGE-----W 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +        T   + A+                   TN+  +H+D++ T      A  R
Sbjct: 160 MVVEADESDGTFTKLPAT---------------ISLVTNIDPEHLDFYGTFDKVREA-FR 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A +  D    + ++ +  +       +  Q               +   
Sbjct: 204 AFIHNLPFYGFACMCIDHPEVQAMIPQLQDRKIITYGLSPQADIRGANVTLGPRGARFDV 263

Query: 293 ISVEG------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           I  +              P+ G   V NAL A G+   +GID A++ + L     V  RF
Sbjct: 264 ILTDRAGGGSRTIEGIRLPMYGRHNVLNALGAIGIAAEMGIDDAVIRDGLYHFEGVKRRF 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              G    G  +  DY H    +  +LK  R  T   +I V      R      +     
Sbjct: 324 TRTGDAG-GVTVIDDYGHHPVEIAAVLKAARDATEREVIAVV--QPHRYSRLNSLFEDFC 380

Query: 407 LDL--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLN 457
                AD  +V D     E P      E +   +       +      +A+   I  +  
Sbjct: 381 TCFNDADQVVVADVYAAGEQPIPGASKEALAEGLKVHGHKSVHVLTNEQALPELIARIAK 440

Query: 458 KQDVLVVAGKG 468
             D++V  G G
Sbjct: 441 PGDLVVCLGAG 451


>gi|300774251|ref|ZP_07084118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758930|gb|EFK55759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 457

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 109/363 (30%), Gaps = 39/363 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA++        +  +TG++GKS+       I Q++G++    G      +        
Sbjct: 105 EFAAQYTN---ARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGNIGRSFAL------- 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++ +      +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 155 ------------QVAQEKFDVYVLEISSFMLDD--MYQFRADVAVILNITPDHLDRYDHK 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +                 I   DD  + + ++R H           Q          
Sbjct: 201 MENYVDSKFRMIRNQTANDYFIYCLDDEETVKGLERHHTEAAIWPMTQEQVINPGAYLDQ 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +         +         L G+  VYN + A  +     + +  + E +     +P
Sbjct: 261 EKNIIINTPKGEQFIMNTEDLSLQGKHNVYNNMAAGLVAKVQELRNRSMQESMSSYVNIP 320

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS+   L++           +    G  D+G    M 
Sbjct: 321 HRLEHVACIGGVNYINDSKATNVNSVWYALESFSPQ-------IVLIMGGVDKGNDYEML 373

Query: 404 KIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +     AI+    DN R      I           +   +  +A+  A  +  K D 
Sbjct: 374 RDLVRSKVRAIICIGKDNTR------IHESFEEDTDVIVNSSSMKDAVEIASHIAQKGDT 427

Query: 462 LVV 464
           +++
Sbjct: 428 VLL 430


>gi|297571254|ref|YP_003697028.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931601|gb|ADH92409.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 450

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 103/268 (38%), Gaps = 13/268 (4%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH+D++ + +A+  A    F   +      +   DD  +  + + A   G R+ 
Sbjct: 173 VTNVEPDHLDHYGSAEAFDQA-FVDFAGKIVPGGLLVCCTDDPGAARLAEAAQVHGVRIA 231

Query: 269 SVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           + G +        +  V +  N  +  +    ++      + G   + NA+ A  +C  +
Sbjct: 232 TYGMKPMPGDHTMISGVVSGANGVEAHVRRGDQEAHIRLSVHGTHMLMNAVGAWIVCCDL 291

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G D+A     L        RFE  G    G R+  DYAH    +E  L+  R++T+GR+ 
Sbjct: 292 GFDAAESASALASFTGTGRRFELRG-EVNGVRVIDDYAHHPTEVEATLRTARSVTTGRVK 350

Query: 386 VVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFI 440
           VVF         +     +    ALD AD  IVT      E P        I+       
Sbjct: 351 VVFQPHL---YSRTRHFARAFADALDTADDIIVTSVYAAREVPNDGVEGDAIVAHSHKAR 407

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              + I+A        N  D+++  G G
Sbjct: 408 YIPDMIDAACAIAADSNPGDLIMTMGAG 435


>gi|164686367|ref|ZP_02210397.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
 gi|164601969|gb|EDQ95434.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
          Length = 451

 Score = 69.2 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 104/282 (36%), Gaps = 18/282 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +  E SS  L+   +   K       NL  DH++ H T + Y  AK  +F+     +  
Sbjct: 160 FLITELSSFQLES--IVDFKPRVSMILNLSPDHLNRHHTMENYIMAKANIFKNQDKNDFT 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y DD   + +  + ++            + I+L     I       I +  +D    
Sbjct: 218 ILNY-DDEAVRALSSKCNSQVLYFSRKHQGVRGIYLNNEGNIVINIDKEIVLLHED---E 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPG   + N + A       GID  ++ E L+    V  R E+V T +    +     
Sbjct: 274 LSLPGGHNLENCMAATLAAYVSGIDIEVIREVLKTFKAVEHRLEYVKTVNGVMYVNDSKG 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +S    + + +     + I++   G D+D     ++  IA       ++       E
Sbjct: 334 TNPDSTIKAVTSYK-----KPIILIAGGYDKDSTYDELL-DIAKQNVKALVL-----LGE 382

Query: 424 DPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              KI A     G        N  EA+ T+ E+ N+ DV+++
Sbjct: 383 TASKIEACAKTKGFEIIKRVQNMKEAVETSAELANEGDVVLL 424


>gi|172037152|ref|YP_001803653.1| cyanophycin synthetase [Cyanothece sp. ATCC 51142]
 gi|20138007|sp|Q9KGY4|CPHA_CYAA5 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|9739167|gb|AAF97933.1|AF279247_1 cyanophycin synthetase [Cyanothece sp. ATCC 51142]
 gi|171698606|gb|ACB51587.1| cyanophycin synthetase [Cyanothece sp. ATCC 51142]
          Length = 872

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
           +  PGR      N       VDYAH     E + + ++     R+ VV G G  RD+   
Sbjct: 726 NQTPGRMNL--FNLGDYHALVDYAHNPAGYEAVGEFVKNWKGQRLGVVGGPGDRRDEDL- 782

Query: 400 PIMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTA 452
            ++GKIA  + D  +V +D+      R E  + I   I+       +    +  EAI   
Sbjct: 783 ILLGKIAARVFDRILVKEDDDKRGRARGEAADLIIDGILSENDKADYEAILDETEAIEYG 842

Query: 453 IEMLNKQDVLVV 464
           ++ ++K  ++V+
Sbjct: 843 LDKVDKGGLVVI 854


>gi|75908537|ref|YP_322833.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
 gi|109892691|sp|Q3MAP8|MURC_ANAVT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75702262|gb|ABA21938.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
          Length = 494

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/411 (15%), Positives = 118/411 (28%), Gaps = 44/411 (10%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +  +    A I    PIL   +    L      +   H    +AV GT GK++
Sbjct: 96  VVCSTAINSNNLEYQAAIELGCPILHRSDVLAAL------INDYHS---VAVAGTHGKTT 146

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    I      +         +P                       
Sbjct: 147 TSSMIGYMLLEAGLDPTIIVGGEVNAWEGNARLGQSP---------------------YL 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L       G  TN+  DH D++ T +   +      +             
Sbjct: 186 VAEADESDGSLVKHAPEIGIITNIELDHPDHYDTLEEVVDIFQTFAKGCKTLIGSVDCAT 245

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLP 307
                +                        +  +    +     +  +GK        L 
Sbjct: 246 VRELLRTAASDRQQPTITYSLHQDTEADYTVTNIDCRADGTTALVWEKGKALGVLKLKLL 305

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + NAL A  +   +G++   + + +        RFEF G    G     DYAH  +
Sbjct: 306 SRHNLSNALAAVAVGRLVGLEFGEIAKGIAGFEGARRRFEFRG-EVDGITFIDDYAHHPS 364

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---LADIAIVTDDNPRSE- 423
            +   L   R        VV      R   +     +   +    AD+ ++TD     E 
Sbjct: 365 EIRATLAAARLQARPGQRVVAIFQPHR-YSRTLTFLEEFSESFSHADLVVLTDIYSAGEP 423

Query: 424 -----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  E++  +I    P  + +          ++ L   D+ +  G G+
Sbjct: 424 NLGLISGEQLAEKIAQEHPQVVYQPTLSTVCEYLLKNLRPGDLALFLGAGN 474


>gi|284031631|ref|YP_003381562.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
 gi|283810924|gb|ADB32763.1| cyanophycin synthetase [Kribbella flavida DSM 17836]
          Length = 953

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 122/391 (31%), Gaps = 46/391 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ A  +  + +  G      G TST      +  +          A   L
Sbjct: 521 VAVTGTNGKTTTARMISHVFKGLGRKV---GMTSTDGVVIDERLVIRADASGPKSARMVL 577

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  V     E +  G+ +  L   +       N+  DH+           A ++     
Sbjct: 578 QNPRVDFAVFEVARGGILREGLGYERNDVAVVLNIQPDHLGLRGVDTLEQLADVKAVLVE 637

Query: 238 -LPKESPAIIYADDAYSKEVMKRAHNAGCRV---------LSVGYQGKFIHLKKVCAIHN 287
            +P++  A++ ADD   +++ ++                             + V    +
Sbjct: 638 AVPRDGFAVLNADDPLVRKMRRKCSGQVVWFSTAEAGSEVREYIEGHCRRGGRAVVLERS 697

Query: 288 KQQVTISVEGKDFDFLFPLPG----------EFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           +    I ++                         V N + AA    A G     + + L 
Sbjct: 698 ELGDMIIMKHGRRSMQLAWTHLLPATFGGRAMMNVQNVMAAAAAAFAAGAPLHDIRQGLR 757

Query: 338 KLHVVPGRF--EFVGTNSRGGRIYVDYAHT----------SNSLEMILKNIRTITSGRII 385
             +                G  + VDY H            + L   L     +     I
Sbjct: 758 TFNTSYYLSPGRLNEIEVDGRHVIVDYCHNAPAMRMLGDFVDKLGESLGASSEVGRPSRI 817

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-----PRSEDPEKI----RAEIIHG- 435
            V    GDR       +G++A    D+ +V +D       R E  E I    RA I  G 
Sbjct: 818 GVIATAGDRRDDDMRELGEVAAQHFDVVLVREDTRLRGRRRGESAELIVEGVRAAIAQGA 877

Query: 436 -IPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                      ++A+R A+   N+ D++V+ 
Sbjct: 878 RCRSVETVLEELDAVRHALTRSNRGDLVVLC 908


>gi|269956080|ref|YP_003325869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304761|gb|ACZ30311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 84/484 (17%), Positives = 162/484 (33%), Gaps = 45/484 (9%)

Query: 6   LIYKDFPELINQLSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAI 64
           +I     E+              ++   V +DSR ++ G +F AI G + DG  F   A+
Sbjct: 1   MIELTASEVAQATGGRLTADPGVRVTGPVVADSRLVEPGALFAAIPGARVDGADFAAGAV 60

Query: 65  AQGAEAIVVSSAYSLQDFSATIRS-----NTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           A GA  ++ +                   +   +V++  R                 + +
Sbjct: 61  ADGAVLVLAAREIDGLPVVVVDDVAAALGDLARVVLERLRAA----------NPAVKVFS 110

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++    + ++              +   SF  +  L    P+ + +  +    
Sbjct: 111 ITGSAGKTTTKDLLGRLVAGEAADGGSD-TIAPTGSFNSEIGL----PLTVLRGTAATR- 164

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + + A   G   +    ++        +G  HI++  +Q+A  +AK       L 
Sbjct: 165 --KLVLELGADKPGDIGYLASIVRPQIAVILMVGTAHIEFFGSQEAIADAKA-EVLGGLV 221

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK- 298
               A++ ADD     +  RA   G RV++ G         +   +    + + ++  + 
Sbjct: 222 PGGTAVLNADDERVLGLAPRATALGHRVVTFGRVPSADVRAEDVTVDATGRASFTLRVRG 281

Query: 299 ------------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGR 345
                              L GE  V NAL AA   I  G   ++V E L       P R
Sbjct: 282 RVAAAGEVADDLRLPVSLRLVGEHHVSNALAAATAAILAGTAPSVVAERLSAAEPGSPHR 341

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRP--- 400
                       +   Y     S+   L+++  +   + R + V G   +  +G R    
Sbjct: 342 MAVTERPDGITVVDDAYNANPESMRAALRSVAVMAGRTRRSVAVLGEMRELGEGARAAHD 401

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +G++ + L    +V   +      E    E   G    +   +   A     E L   D
Sbjct: 402 AIGRLVVRLNIKLLVVVGDGAYHIHEGAMQEGSWG-EETVFVPDLDAARAELAERLRPGD 460

Query: 461 VLVV 464
           V++V
Sbjct: 461 VVLV 464


>gi|110800658|ref|YP_696598.1| FolC bifunctional protein [Clostridium perfringens ATCC 13124]
 gi|110675305|gb|ABG84292.1| FolC bifunctional protein [Clostridium perfringens ATCC 13124]
          Length = 441

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 132/391 (33%), Gaps = 47/391 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
                 + + GT+GK S  + +  + + +G                +             
Sbjct: 37  HKDTKFIHIGGTNGKGSTTAMISSVLKEAGFKVGMYTSPYLEEFEERIQINGENIDKDDL 96

Query: 164 ----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                 T   I  A    Y S + V +  +E    G    RLD 
Sbjct: 97  AVLMGDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGG----RLDA 152

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             ++      L    +D+            +    ++    P I Y  +  + EV+K   
Sbjct: 153 TNVVLPEVVVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVPVISYPQEEKALEVIKERC 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N     L V       ++  +    + Q++ +S+E +       L G+ QV N LVA   
Sbjct: 213 NELGCNLEVVNTEDIRNII-IDKEKHIQKIEVSLEDEILKIDLGLLGDHQVKNFLVALKT 271

Query: 322 CIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            I +  +    S   ++   K     GR E +   +    + +D AH  + +  +  +I 
Sbjct: 272 LIKLRNNGVNISNEAIKEGFKKVRWIGRMEVL---NENPLVVIDGAHNIDGIRNLRNSID 328

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
              + + I ++ G  GD+       M +      D  ++ + +  R+ED E +  ++   
Sbjct: 329 KYFNFKNITLILGVLGDKQVD---EMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVKKY 385

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    +  +  EA   A  + N+ D+L++ G
Sbjct: 386 VKEVFKFKDYKEAYNKAYSLTNEDDLLLICG 416


>gi|51246749|ref|YP_066633.1| UDP-N-acetylmuramate-alanine ligase [Desulfotalea psychrophila
           LSv54]
 gi|59798231|sp|Q6AJ54|MURC_DESPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50877786|emb|CAG37626.1| probable UDP-N-acetylmuramate-alanine ligase [Desulfotalea
           psychrophila LSv54]
          Length = 459

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 86/439 (19%), Positives = 142/439 (32%), Gaps = 55/439 (12%)

Query: 56  GHLFIPQAIA-QGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKF-LSLFASRLYG 111
           GH    QA +  GA  +V SSA +  +           P++     R   L+        
Sbjct: 56  GH----QAASCAGASVVVTSSAVAEDNPEVVQAREDKIPVI----PRAEMLAELMRL--- 104

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV G+ GK+S  S +  +  ++G     +     + SF  + +L     +   
Sbjct: 105 --KTFGIAVAGSHGKTSTTSLIGCLLSQTGFDPTIV-VGGKVDSFGGNAKLGEGDFLVAE 161

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S  S                       +  +    TN+  +H+DY+   +       
Sbjct: 162 ADESDGSFLK--------------------LSPVLEVVTNIDLEHLDYYTDIEHIK-ETF 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F + +P    AI+  DD     ++ +                     +  A  +  +V
Sbjct: 201 LSFIDKIPFYGAAIVCLDDENVAAILPQVQKRLITYGLTPQADVSADNLRFAAGRSTFRV 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             + E      +FP  G   VYNAL A  + + + I    +   L     V  R +  G 
Sbjct: 261 RAAGEVLGEISVFP-SGTHNVYNALAAVAIGLELEIPFGKIATALASFGGVQRRMQHKGE 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDL 409
              G  +  DYAH    +   LK I+     + +VV        R Q       K     
Sbjct: 320 GK-GITVIDDYAHHPTEIRASLKAIKETWPEKRLVVLFQPHRYSRTQALFEEF-KTCFHQ 377

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVL 462
           AD  I+TD    SE P      E +   I      +              +  L + D++
Sbjct: 378 ADCLIMTDIYEASESPIEGVSTEILLEAIKAHGQRYTRHIPEIASLATEVMPNLREGDLV 437

Query: 463 VVAGKGHETVHIVTNGEKK 481
           V  G G+    IV  GE+ 
Sbjct: 438 VTLGAGN----IVQAGEEI 452


>gi|308388622|gb|ADO30942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha710]
          Length = 445

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +         D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNV-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATKDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGKKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|290969172|ref|ZP_06560697.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780678|gb|EFD93281.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 464

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 142/428 (33%), Gaps = 48/428 (11%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE ++VS+A      ++ A    + PIL   +    L    S          +AV G  G
Sbjct: 69  AETVIVSTAIHPDNAEWQAARERHLPILHRSD---ALVHIMSW------GKAIAVAGAHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S + Q+    G     I     +     ++ L T  P  +A+A     +    H 
Sbjct: 120 KTTTSSMLGQVFIE-GRLHPTIVIGGEVDYLHSNSTLGTG-PYVIAEADESDGTFLKEHP 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           ++                      TN+  DH+D++ +      A  +  + L P++  A+
Sbjct: 178 AIAV-------------------VTNIDADHMDHYGSMAHVIAAFKQFIQRLDPQDGMAV 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D+ + + +  +                                    +         
Sbjct: 219 LCFDNEHIRRLASQVGRTYISYGFAEDAEYTAK-NLYYKEGKHYFDVYRRQVLLGTVCLQ 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL    + +  G+  A +   L + H    RF+  G      R+  DYAH 
Sbjct: 278 VPGRHNVLNALATIAVSLHCGLPFAEIAAALCRFHGAKRRFQTKGYVGT-IRVVDDYAHH 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              ++  L     + + R++ +F      R Q      G  A   ADI +VTD     ED
Sbjct: 337 PTEIKATLAAAGDMGTHRVVCLFQPHRYSRTQLLLEQFG-TAFSNADILVVTDIYGADED 395

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH-----ETV 472
           P        I  +I            R E I     +     D+++  G G      E  
Sbjct: 396 PVPGVTGRLIVDKIKEKTGKSAVYIPRKEDILPFLQKEARPHDLILTMGAGDIYRIGEAY 455

Query: 473 HIVTNGEK 480
             +  GE+
Sbjct: 456 ITMAKGER 463


>gi|187777470|ref|ZP_02993943.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
 gi|187774398|gb|EDU38200.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 134/424 (31%), Gaps = 49/424 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + I   A+ IV ++A +  D    I +    + + +   FL            +
Sbjct: 61  GHK--KENIKN-ADLIVYTAAIAS-DNPEIIEAKEKNIKLMDRADFLGDLMKGY-----K 111

Query: 116 NILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A++GT GK++  S +  +  + +   +  +G    I +       +        +  
Sbjct: 112 YNVAISGTHGKTTTTSMLSHVALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYK 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S                               G   N+  DH+DY++      NA  +  
Sbjct: 172 SSFLKF----------------------FPYIGVILNIDADHLDYYKDLDDIKNAFSKFI 209

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + +           D      + +   N     ++ G            A  +     + 
Sbjct: 210 KLIPKDGYLIAYGEDKNIQSIIKEANCNVITYGINSGDIQAHNIEYDEKACGSFD--VVK 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + K F     +PG+  + N+L +  + +A  + +  ++E +E       RFE  G  + 
Sbjct: 268 NKQKLFSVKLNVPGKHNILNSLASICIGLASNMKNEDIIEGIESFFGTHRRFELKGCKN- 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIA 413
              +  DYAH    +   L   +     ++  VF      R         K   D AD  
Sbjct: 327 NITVIDDYAHHPTEISATLDAAKKYPHNKMFCVFQPHTYSRTLTLFDDFTK-CFDNADEI 385

Query: 414 IVTDDNPRSE-DPEKIRAEIIHG--------IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I+ D     E D   I ++++             F +  +        IE     D+++ 
Sbjct: 386 ILADIYAAREKDTGIINSDMLGDKLRERGLKCTNFHKFDDIK---NYLIENAKTGDLILT 442

Query: 465 AGKG 468
            G G
Sbjct: 443 VGAG 446


>gi|332525742|ref|ZP_08401889.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109299|gb|EGJ10222.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 861

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 126/369 (34%), Gaps = 24/369 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++V+  +  +   +G      G T+T   +   +++ +        A + L
Sbjct: 472 VAVTGTNGKTTVSRLIAHLFNAAGYKV---GMTNTDGVWVDGHQIDSGDCSGPKSARNVL 528

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
           +        +E +  G+ +  L   +      TN+G        + T         R+  
Sbjct: 529 AHPDTEAAVLETARGGMLREGLGFDRCQVAVVTNVGAGDHLGLNYITTVEDLAVLKRVIV 588

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH----------NAGCRVLSVGYQGKFIHLKKVCAI 285
           + + +   A++ A D  + ++ +             +    V      G+ + +     +
Sbjct: 589 QNVAESGYAVLNAADPITLQMAQHCPGGVILFAVDGHLPAMVAHRAQGGRTVFVDGDAIV 648

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                    V  ++          FQV NAL A       G+    V   L         
Sbjct: 649 AVNGSARARVPLREVPLTRNGTIGFQVENALAAVAAAWGCGLSFDAVSAGLASFVNDAHN 708

Query: 346 F--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
               F   + RG  +  DY H ++++  ++  +  + + R  VV    GDR         
Sbjct: 709 APGRFNVMDYRGATVIADYGHNADAMRALVGAVEAMPAQRRSVVISAAGDRRDEDIREQT 768

Query: 404 KIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEML 456
           +I     D  ++  D   R     ++ A +  G+          E      AI  A+E L
Sbjct: 769 QILGAAFDEVLLYQDAAQRGRADGEVIALLREGLRGAPRTRRVEEIHGEFVAIDQALESL 828

Query: 457 NKQDVLVVA 465
              D+ +V 
Sbjct: 829 QPGDLCLVL 837


>gi|241760232|ref|ZP_04758328.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
 gi|241319343|gb|EER55808.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
          Length = 469

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 139/427 (32%), Gaps = 61/427 (14%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLY 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                  +   +  I  + + T+ V+ K  +
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTADI--YATDIENIGAQMKFTVHVQMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QEPFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R      R+++ F      R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLSAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDV 461
           D  ++T+     E+P  I A     +   I    ++E I         +  + +L   DV
Sbjct: 389 DALVLTEVYAAGEEP--IAAADSRALARAIRVLGKLEPIYCENVVDLPQMLLNVLQDGDV 446

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 447 VLNMGAG 453


>gi|15805654|ref|NP_294350.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
 gi|25008807|sp|Q9RWN9|MURC_DEIRA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|6458326|gb|AAF10205.1|AE001920_8 UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
          Length = 482

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 117/407 (28%), Gaps = 42/407 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V+S    +       +    + V      L    +          + V GT GK++  
Sbjct: 95  VLVASEAVPKSHPELAAARAAGVEVRPRMALLGELLAA------GPSVGVIGTHGKTTTT 148

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +      +GL        +           T P    + ++    +            
Sbjct: 149 SMIAVAMYGAGLDPSAFVGGNVPEFGGNARTGTGPFVAEVDESDRGFAL----------- 197

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      +      FTN   DH+        Y++             + +      
Sbjct: 198 -----------LGCETAVFTNAEDDHVGGEL--ATYWSTVEEQHAGFARFVAQSGRVLFC 244

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGE 309
           A    +      A  ++      G       V    +     +   G+        LPG 
Sbjct: 245 ADWPGLDTLCSGAREQLTYGQSAGADYRAVNVRPDESGTTFDVEFRGERLGEARVSLPGT 304

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V N L A  +    G D       L   H    R+E  G    G  +  DYAH +  +
Sbjct: 305 HNVLNGLAALAVTHLYGGDFDRAARALADFHGPGRRWEIKG-ERGGALVVDDYAHNATKV 363

Query: 370 EMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK- 427
              ++  R  T  R+ VVF      R Q   P +    +D AD  +V D    SE P + 
Sbjct: 364 ASAVQAARQ-TGRRVRVVFQPHRYLRTQQSWPRLADALMD-ADEVLVLDIAAASETPIEG 421

Query: 428 -----IRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                I   +  G  P      +R   +R   E     D++V  G G
Sbjct: 422 VHATLITDRMTQGGHPNVHYCPDRAAVVRDLRESAQPGDIIVTMGAG 468


>gi|209884384|ref|YP_002288241.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
 gi|209872580|gb|ACI92376.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
          Length = 482

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 139/421 (33%), Gaps = 53/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 80  NGADVLVVSTAIKRDNPELMAARAQRIPVV---RRAEMLAELMRL------KSCIAIAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 131 HGKTTTTSMVATLLDA-GALDPTVINGGIINAYGTNARLGEGEWMVVEADESD------- 182

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             + +     TN+  +H+D+ +T +A  +A  R F E +P    
Sbjct: 183 -------------GTFLKLPVDVAIVTNVDPEHLDHFKTFEAVQDA-FRHFVEGVPFYGF 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  D A  + ++ R  +          Q     L  +       +  + V  +     
Sbjct: 229 AVMCIDHAVVQALVGRIEDRRIITYGENPQADA-RLVDLQPFPGGSKFKVEVRHRKAGAA 287

Query: 304 F-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P+PG     NA  A  +   IG+    + + L     V  RF   G    G 
Sbjct: 288 HVIADLVLPMPGRHNALNATAAIAVAHEIGMSDEAIRKALAGFGGVKRRFTRTG-EWNGV 346

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAI 414
            +  DY H    +  +LK  R   +GR+I V      R      +  +       AD  I
Sbjct: 347 TVIDDYGHHPVEIAAVLKAARDTATGRVIAVV--QPHRFSRLHTLFEEFCTCFNDADTVI 404

Query: 415 VTDDNPRSEDPE-KIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           V D  P  E P   I  +        HG    I   +  +       +    D +V  G 
Sbjct: 405 VADVYPAGEAPIPGIDRDAFVLGLRAHGHREVIALESAAQLASIVRRIAQPGDFVVCLGA 464

Query: 468 G 468
           G
Sbjct: 465 G 465


>gi|6624710|emb|CAB63850.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634560|emb|CAB64460.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634565|emb|CAB64464.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634570|emb|CAB64468.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634575|emb|CAB64472.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634580|emb|CAB64476.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634585|emb|CAB64480.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634622|emb|CAB64502.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI  A   GA   +  
Sbjct: 54 FIETAFENGAAVTLSE 69


>gi|256825187|ref|YP_003149147.1| cyanophycin synthetase [Kytococcus sedentarius DSM 20547]
 gi|256688580|gb|ACV06382.1| cyanophycin synthetase [Kytococcus sedentarius DSM 20547]
          Length = 908

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 119/386 (30%), Gaps = 44/386 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ +  V  I + SG      G TST      +  +          A + L
Sbjct: 488 VAVTGTNGKTTTSRMVGHIMRGSGHHV---GMTSTDGVVIDERLVIKRDASGPKSARTVL 544

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEE 236
               V    +E +  G+ +  L   +      TN+  DH+                +   
Sbjct: 545 QHPRVDFAVLEVARGGIIREGLGFDRTDVAVVTNVTADHLGLGGVDTVEQLAEIKSVIVS 604

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---------VCAIHN 287
            +P+   A++ ADD   +++  R               K  +            V     
Sbjct: 605 AVPRSGYAVLNADDPLVRDMRHRCRGQVVWFSLAEPGSKERNFIDRRLLRGGRAVLLEQT 664

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++   I +                      A          +         LH +     
Sbjct: 665 ERGERIVLAEGKRWMPLTWTHTIPATYGGAARFNVANAMAAAGAAWSAGAPLHDIRAGLR 724

Query: 348 FVGTNSR------------GGRIYVDYAHTSNSLEMILKNIRTITSG--------RIIVV 387
               +              G  +YVDYAH    L+ + + +              + IVV
Sbjct: 725 SFAPDYYLSPGRLNRVEVNGAEVYVDYAHNPAGLQALSEFVANRAMSLAEGGEEPQRIVV 784

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIH----------GI 436
            G  GDR       +G++A    D  ++ +D N R  +P +    I              
Sbjct: 785 LGAAGDRRDSDVRELGEVAAQQFDTVVIREDENLRRREPGEAAGLIREGVDAAVAAGARA 844

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVL 462
              IE+ + ++A + A+   N  D++
Sbjct: 845 TTVIEEWDEVQACKVAMSHANPGDIV 870


>gi|182624400|ref|ZP_02952184.1| FolC bifunctional protein [Clostridium perfringens D str. JGS1721]
 gi|177910403|gb|EDT72780.1| FolC bifunctional protein [Clostridium perfringens D str. JGS1721]
          Length = 441

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 130/391 (33%), Gaps = 47/391 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
                 + + GT+GK S  + +  + + +G                +             
Sbjct: 37  HKDTKFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENIDKDDL 96

Query: 164 ----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                 T   I  A    Y S + V +  +E    G    RLD 
Sbjct: 97  AILMGDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGG----RLDA 152

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             ++      L    +D+            +    ++    P I Y  +  + EV+K   
Sbjct: 153 TNVVIPEIVVLTSISLDHMNILGNTIEEIAKEKCGIIKSGIPVISYPQEEKALEVIKERC 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +     L V       ++  +    + Q++ +SV  +       L G+ QV N LVA   
Sbjct: 213 DELGCNLEVVNTEDIRNII-IDKEKHVQKIEVSVGDEILKIDLGLLGDHQVKNFLVALKT 271

Query: 322 CIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            I +  +        ++   K     GR E +   +    + +D AH  + +  +  +I 
Sbjct: 272 LIKLRNNRVNISNESIKEGFKKVRWIGRMEVL---NENPLVVIDGAHNIDGIRNLRNSID 328

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
              + + I ++ G  GD+       M +      D  ++ + +  R+ED E +  ++   
Sbjct: 329 KYFNFKNITLILGVLGDKQVD---EMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVKKY 385

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    +  +  EA   A  + N+ D+L++ G
Sbjct: 386 VKEVFKFKDYKEAYNKAYSLTNEDDLLLICG 416


>gi|303230748|ref|ZP_07317495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514508|gb|EFL56503.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 454

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 90/290 (31%), Gaps = 16/290 (5%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +        ++  E SS+ L+   +     +     N+  DH+  H+T + Y  AK R+F
Sbjct: 150 AAYHMPEGGYLVAELSSYQLET--IKSFCPLGAIVLNVTPDHLARHKTMENYAAAKARIF 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               P+    +   D                                 C      + T  
Sbjct: 208 MNQNPENFVVLNDDDPIVRAMKKDAHSKVLSISQHHKVDSGAYFEGNTCYAVLDGKATPV 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++ +             + N L    L  A+G++   +   +E+ H V  R E V T   
Sbjct: 268 IDTEHIHIKGSH----NIENILAVIALTYALGVEVEHIKHTIEQFHGVEHRLERVTTFHD 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  ++S+   L         + +++   G D+       M  +     ++  
Sbjct: 324 VTFYNDSKATNTDSVVKALDAFD-----KPVILLAGGHDKMTPLEDFMNIVKAHTKEVIF 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +   R E        +  G+       +  EA+    ++    D++++
Sbjct: 379 MGEAADRFESVA-----VKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLL 423


>gi|302380184|ref|ZP_07268656.1| bifunctional protein FolC [Finegoldia magna ACS-171-V-Col3]
 gi|302311967|gb|EFK93976.1| bifunctional protein FolC [Finegoldia magna ACS-171-V-Col3]
          Length = 415

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 125/381 (32%), Gaps = 39/381 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF--------------- 156
           +    I+ V GT+GK S ++F+ Q  +  G  +        I+ +               
Sbjct: 36  EKSFKIIHVAGTNGKGSTSTFIYQTLKEHGYKTGLFTSPHIINFYDRIKIDKEISEEDFM 95

Query: 157 -----------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                        D +++T   I L  A+ Y + Q   +V +E    G    RLD     
Sbjct: 96  RIFEIIKNTIEENDIKVSTFEFITL-CAIYYFAEQKCEYVVLEVGMGG----RLDATNAT 150

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  ++          Q+   N    +  E                 + V+        
Sbjct: 151 DETLLSVIT--KIGLDHQEYLGNTLEEIAYEKACIMKQNGRCVVYDQQESVLDVFREVAE 208

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
              +  Y   F   K +           S + K+      L G +Q++NA +A      +
Sbjct: 209 ERNNKLYICDFDEAKNIEINATHN----SFDWKNLHIETRLVGRYQLFNAQLALTAIDIL 264

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
             +  L  E +                     +  D  H ++ ++ +  +I ++   + I
Sbjct: 265 RDELDLSDEDIINGFKNAYIPARFDVIRHNPTVIYDGGHNADGVKALKSSIESVFGDKKI 324

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            VF  G  +D+     +  I  +       T D+PR+   E ++ +I       + K N 
Sbjct: 325 -VFVYGVLKDKDYNDEIKLIHENAKAFVTFTPDSPRALKAEDLKKQIEVYSDKVVAKSNV 383

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A+  AIE     DV+++ G
Sbjct: 384 NDAVDYAIEHFK-DDVIIIFG 403


>gi|300856627|ref|YP_003781611.1| folylpolyglutamate synthase [Clostridium ljungdahlii DSM 13528]
 gi|300436742|gb|ADK16509.1| folylpolyglutamate synthase [Clostridium ljungdahlii DSM 13528]
          Length = 448

 Score = 69.2 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 12/208 (5%)

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ---VYNALVAAGL 321
            +V     + +        +    Q++ +  + +D+     L G  Q      AL A   
Sbjct: 228 IKVPCDCVEPEDQEKVDNNSKEYVQKIKVHTKKEDYHIKLSLLGRHQLTNCACALFAIEE 287

Query: 322 CIAIGIDSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTI 379
               G D                GR E +        + +D AH    + M+ KN     
Sbjct: 288 LSRYGFDIDKQTILKALSNVKWIGRLEVMHRKPL---VVIDGAHNREGISMLRKNLCTYF 344

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D++     +M K  + LA+  I VT +N R+E+ ++++  I      
Sbjct: 345 NYNKMILILGILADKEVE---VMVKTIVPLAERVIAVTPNNTRAENSKELKGVIEKYNSK 401

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   EA   A+   ++ D+L+++G
Sbjct: 402 CEALDTYEEAYEKALSYCSEDDILLISG 429


>gi|163751822|ref|ZP_02159038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
 gi|161328307|gb|EDP99468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
          Length = 449

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 127/398 (31%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S   +L         +  I V+ +         +R        ++ +TG++GKS
Sbjct: 67  ASQIVISPGIALDTPEIRAAIDMDIEVIGDV-----ELFARAVKNSSSCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +GL+    G                 SPI L                +
Sbjct: 122 TVTTLVGEMAKAAGLNYAVGGNIGIPVLDLLQ------SPIDL--------------YIL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  IA +  N+  DH+D ++  +AY  AK+ L+             
Sbjct: 162 ELSSFQLET--THSLNCIAATCLNISEDHMDRYRDLEAYRQAKLSLY------------- 206

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D   + +  R  +       +      +          K    +    +         
Sbjct: 207 --DQSKRALFNREDSLTQPNDPMDQNSFGLTSPVNDEWGVKDGKIVHGASEIVSLDDVAI 264

Query: 308 GEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                +  L  A  L    GI+   ++E  +    +  R E V        +    A   
Sbjct: 265 VGSHNHANLIAAMALAYHAGIEKESMIEVAKHFTGLAHRCELVANIDAVSYVNDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L+ +         ++   GGD   GK    G +   L D    T      +D +
Sbjct: 325 GATVAALEGLSEHLGD---IILIAGGD---GKGADFGPLEAVL-DKV--THLITLGKDGD 375

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI A             +  +A++ A  +    D++++
Sbjct: 376 KIAALK----DNSKRVDSMADAVKQAAGLATAGDIVLL 409


>gi|6634685|emb|CAB64536.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI  A   GA A +  
Sbjct: 54 FIETAFENGAAATLSD 69


>gi|227538299|ref|ZP_03968348.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241814|gb|EEI91829.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 457

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 108/363 (29%), Gaps = 39/363 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA++        +  +TG++GKS+       I Q++G++    G      +        
Sbjct: 105 EFAAQYTD---ARLYCITGSNGKSTTTMLTYYILQKAGVNVGLAGNIGRSFAL------- 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++ +      +E SS  LD       +       N+  DH+D +  +
Sbjct: 155 ------------QVAQEQFDVYVLEISSFMLDDM--YQFRADVAVILNITPDHLDRYDHK 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +                 I   DD  + + ++R H           Q          
Sbjct: 201 MENYVDSKFRMIRNQTANDYFIYCLDDEETVKGLERHHTEATIWPMTQEQVINPGAYLDQ 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +         +         L G+  VYN + A  +     + +  + E +     +P
Sbjct: 261 EKNIIINTPKGEQFIMNTEDLSLQGKHNVYNNMAAGLVAKVQELRNRSMQESMSSYVNIP 320

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS+   L++           +    G  D+G    M 
Sbjct: 321 HRLEHVACIGGVNYINDSKATNVNSVWYALESFSPQ-------IVLIMGGVDKGNDYEML 373

Query: 404 KIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +     AI+    DN R      I           +   +  +A+  A  +  K D 
Sbjct: 374 RDLVRSKVRAIICIGKDNTR------IHESFEEDTDVIVNSSSMKDAVEIASHIAQKGDT 427

Query: 462 LVV 464
           +++
Sbjct: 428 VLL 430


>gi|301063251|ref|ZP_07203800.1| UDP-N-acetylmuramate--L-alanine ligase [delta proteobacterium
           NaphS2]
 gi|300442679|gb|EFK06895.1| UDP-N-acetylmuramate--L-alanine ligase [delta proteobacterium
           NaphS2]
          Length = 457

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 76/429 (17%), Positives = 143/429 (33%), Gaps = 48/429 (11%)

Query: 50  VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
            G+K D    I +A     + +V SSA   Q+       +   + V    + L+      
Sbjct: 57  RGHKRDN---IQEA-----DVVVYSSAVGFQNPELQEAKD-RYIPVIPRAEMLAELMRLK 107

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           YG      +A+ G  GK++  S V  I  R GL    +           + +L     + 
Sbjct: 108 YG------VAIAGAHGKTTTTSMVASILMRGGLDPTVVIGGRLDIWGGSNAKLGQGDVLV 161

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S                          +       TN+  +H+D++ +  A    
Sbjct: 162 AETDESD--------------------GSFLALSPSIAVVTNIDHEHMDHYGSMAAIRRT 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    AI+  D+   + ++ +                     +        
Sbjct: 202 -FVDFINKIPFYGIAILCQDNEEIQGIIPQLKKRYITYGMSTQADLRGKDLRNEKWGTSL 260

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +  I            +PG     NAL A  + + + ++  ++ E L  L  +  R +  
Sbjct: 261 E-VIYRNNSMGRISVGMPGAHNALNALAATAVGLELDLEMGVIGEGLTALGGLARRLQIK 319

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G    G  +  DY H    +   LK ++T  S + +VV        + +  ++ +  +  
Sbjct: 320 G-EKNGIMVMDDYGHHPTEIMATLKTVKTCWSEKRLVVVFQPHRYTRTQ-SLLDRFVISF 377

Query: 410 --ADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
             AD+ +VT   P  EDP      E +  EI   G    I   +    + T +++L   D
Sbjct: 378 NDADVLLVTPIYPAGEDPIENINSENLVREIKEHGHKEVIFCNDLKAVVPTLLKLLTPGD 437

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 438 LVLTLGAGN 446


>gi|149202237|ref|ZP_01879210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
 gi|149144335|gb|EDM32366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
          Length = 469

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/411 (13%), Positives = 116/411 (28%), Gaps = 50/411 (12%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           G  A++VS      Y + +          + V ++   F    A+  +        ++AV
Sbjct: 66  GVAALIVSPGIPHLYPVPNRVIAAAQEAGVPVDNDIGLFFRSLATDDWDGFDVTPKVIAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  +   +G ++   G              +    + L+   + L+  
Sbjct: 126 TGSNGKSTTSALIHHVLTEAGRAAQLAGNIGRGVLDIDPPEDSGVVVLELSSYQTDLARA 185

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               V+V  +       R  G+     +   L  +              +  +  +    
Sbjct: 186 LTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPD----------RAVIGVDEAEG 235

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A   A+      V++ + +            +   L +         + +       
Sbjct: 236 RYLAGQMAEGPNDDRVIRISVDRKLSGFGWSVFARKGFLSEYRHGRQVGSIDLREVKG-- 293

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                LPG     NA  A   C  +G+   ++         +P R + V        +  
Sbjct: 294 -----LPGSHNHQNACAAYAACRTLGLAPRVIEAGFHSYAGLPHRSQRVAEKDGVIFVND 348

Query: 361 DYAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             A   +S    L     I            +     G     +  ++G+ A   A    
Sbjct: 349 SKATNVDSALKALLAFDNIRWICGGLEKDGGLGGLAPGLAHVRRAYVIGREAAQFA---- 404

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                            I  G           EA+  A+      DV+++A
Sbjct: 405 -----------------IGLGAVDTEVCTTMSEAVARAVRDAEPGDVVLLA 438


>gi|94312058|ref|YP_585268.1| UDP-N-acetylmuramate--L-alanine ligase [Cupriavidus metallidurans
           CH34]
 gi|166224718|sp|Q1LIM7|MURC_RALME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93355910|gb|ABF09999.1| UDP-N-acetylmuramate:L-alanine ligase [Cupriavidus metallidurans
           CH34]
          Length = 471

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 85/442 (19%), Positives = 141/442 (31%), Gaps = 62/442 (14%)

Query: 51  GNKE-DGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFA 106
           G +   GH           GA A+VVS+A +  +          I VV   R   L+   
Sbjct: 50  GARVAHGHD-----AENVTGANAVVVSTAVTNDNPEVLAARARRIPVVP--RAVMLAELM 102

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTP 165
               G      +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T 
Sbjct: 103 RLKQG------VAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTG 154

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             I      S  S                       +  +    TN+  DH+D +    A
Sbjct: 155 DFIVAEADESDASFLN--------------------LFPVMEVITNIDADHMDTYGHDFA 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKV 282
                   F + LP    A++  DD   +E++        R         +         
Sbjct: 195 RLKQAFVEFTQRLPFYGIAVLCVDDPNVREILPFVSKPVVRYGFAEDAQIRAVNARAVDG 254

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  +          D +  LPG   V NAL A  +   + +  A +++ L + H V
Sbjct: 255 QMHFTVLRQLNGHAEPPLDIVLNLPGIHNVQNALAAIAIATELEVPDASIVKALREFHGV 314

Query: 343 PGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCG 391
             RF+  G  +         +  DY H    +   L   R     R +V+      F   
Sbjct: 315 GRRFQRYGEVATPDGSGTFTLVDDYGHHPVEMAATLAAARGAFPDRRLVLAFQPHRFTRT 374

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG----FIEKGNRI 446
            D  +    ++G +   L        ++P  + D   +   +            +  +  
Sbjct: 375 RDCFEDFVKVLGTVDALLLAEVYAAGESPIVAADGRALTRALRVANKVEPVFVEQIEDMP 434

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           +AI  A+      DV+V  G G
Sbjct: 435 QAILNAV---RPGDVVVTMGAG 453


>gi|255656631|ref|ZP_05402040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-23m63]
 gi|296449914|ref|ZP_06891678.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296878295|ref|ZP_06902304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
 gi|296261184|gb|EFH08015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296430743|gb|EFH16581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
          Length = 451

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 96/278 (34%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  +    +  N+  DH++ H T + Y  AK  +F     ++   + Y
Sbjct: 164 ELSSFQLES--IDEFRPKVSAILNITEDHLNRHHTMEKYIEAKTNIFMNQTSEDFCVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   K +  + +               ++L+    I +       +   D      LP
Sbjct: 222 -DDEIVKGLADKCNAKVIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDV----SLP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + A  +     ID  ++ + L     V  R EFV        +        +
Sbjct: 277 GGHNLENCMAAIAIAYVCKIDLEVIKDVLMTFKGVEHRQEFVRNLDNVIYVNDSKGTNPD 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    +++       R I++   G D+      ++ + A       ++       E    
Sbjct: 337 STIKAIQSYD-----RPIILIAGGMDKGSNFDELL-ETAKSYVKSLVL-----LGETASN 385

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G        +  EA++T+ E+    D++++
Sbjct: 386 IENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|297566098|ref|YP_003685070.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
 gi|296850547|gb|ADH63562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
          Length = 430

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           +++ DSR ++ G  F+A+ G K  G  F   A+  GA  ++   A+              
Sbjct: 34  DLTWDSRKVKPGSAFIALPGTKVHGREFAQAALQAGAALVLTDQAHPGA----------- 82

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + V +  + L      L  +    ++ V G+SGK++    + Q                
Sbjct: 83  -VQVADPARALLELGHALRKEFSGTVVGVGGSSGKTTTKEAIAQGLGWPAPEGNLNNAPG 141

Query: 152 TISSFAQDNRLTTPSPIYL 170
               F +       + + L
Sbjct: 142 LAQFFFRLQPHAPGAVVEL 160


>gi|48478328|ref|YP_024034.1| folylpolyglutamate synthase/dihydrofolate synthase [Picrophilus
           torridus DSM 9790]
 gi|48430976|gb|AAT43841.1| folylpolyglutamate synthase/dihydrofolate synthase [Picrophilus
           torridus DSM 9790]
          Length = 435

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/399 (13%), Positives = 124/399 (31%), Gaps = 44/399 (11%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS--SFQIGPTSTIS 154
           +T +  +        +     + + GT+GK S++S++  I ++   +             
Sbjct: 21  DTTRAFAE--HLGNPQDKYKKIHIAGTNGKGSISSYIYNILRQRYNTGLYTSPHLIKFNE 78

Query: 155 SFAQDNRLTTPSPIYLAKALSY-----------------------LSSQGVTHVSVEASS 191
               +  + +   I    + +                               H    A  
Sbjct: 79  RIIFNKEMISDDYIINFISENRDYIDKLSKIKMNPTFFETTTVMAFKYFYDMHADYAAIE 138

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            GL   RLD   +I    + +G+   +++Q       +       ++    P ++   D 
Sbjct: 139 VGLG-GRLDSTNIIIPEISIIGQIGYEHYQKLGCSLTSIAYEKGGIIKPGIPVVLQ--DK 195

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             + + +    +  R   +     +    +    + K    +     ++       G +Q
Sbjct: 196 KPEVLAEIKKLSQVRKSKLILSEDYSKSTEPELYNFKMVFDLKTPLNEYHIESNNLGLYQ 255

Query: 312 VYNALVAAGLCIAIGIDSALVLEHL-EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           V N   A      +                +  GR E +  +     + +D AH   +  
Sbjct: 256 VKNIKTAVAALENMDTSINKHDVESGIDKAIWHGRMEIIRASPL---VIIDSAHNPPAAS 312

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP--RSEDPEKI 428
            ++ + +     + +++ G   D+D         I   L+D  ++T  N   R+ DP+ I
Sbjct: 313 NLVPSFKKFIKKKPLLLIGMLSDKDV---FSFLTIMRQLSDKIVLTMPNEPDRALDPDNI 369

Query: 429 RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +I   I        + + A   +++     D ++V G
Sbjct: 370 -KDIASSIYRDVKIIKDPLSAYDYSLKNS---DCVLVCG 404


>gi|116749106|ref|YP_845793.1| FolC bifunctional protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698170|gb|ABK17358.1| FolC bifunctional protein [Syntrophobacter fumaroxidans MPOB]
          Length = 431

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 109/385 (28%), Gaps = 29/385 (7%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ------ 158
                        + + GT+GK S A+ +  + ++ G+          +    +      
Sbjct: 35  LMRLGNPHRSLRCIHIAGTNGKGSTAAMLSSMLRKHGVRVGLYTSPHLVRFTERFRIDER 94

Query: 159 ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVE---ASSHGLDQHRLDGIKLIAGSFTN 211
               D  L     +          +      ++     +   ++   ++         TN
Sbjct: 95  EVRIDRILAIFEKVRKQIDDREPPTFFEVVTAMALLLFAEENVEWAVIETGMGGRLDATN 154

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +    +             +      + +E   II  +      V +   +         
Sbjct: 155 VIHPRVSVITNVTFDHQEYLGSTLSSIAREKAGIIKEEVPVVTGVTQPLVHGVLTATCQR 214

Query: 272 YQGKFIHLKK-----VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            +     L K            +   +  +    +   P   + +     +A    +   
Sbjct: 215 KRAVLYRLGKEFKARRRPGGAARYQGLKWDWPSLEISLPGVHQVRNAALAIAVLEVLEEK 274

Query: 327 IDSALVLEHLE---KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
            D  +    +E        P R E +G       I +D AH     E +   +R   T  
Sbjct: 275 GDFYIDSGAVELGLSAVRWPARLEVLGRRPL---IVLDGAHNPQGAESLRDALRNCFTYQ 331

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIE 441
           ++ +V G   D+D      + +  L LA+ AI T     R+   +++R            
Sbjct: 332 KLHLVMGIMEDKDI---AGIFRRLLPLAETAIFTQPRYSRAAKADRLRQLARPYAGNHCV 388

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  EAI+ A       D++ + G
Sbjct: 389 IPDVAEAIQQAGRFAGPDDLICITG 413


>gi|308048066|ref|YP_003911632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
 gi|307630256|gb|ADN74558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
          Length = 433

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 144/437 (32%), Gaps = 74/437 (16%)

Query: 36  DSRHIQAG--WI---F--VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS 88
           DSR    G   +   F  VA+     DG       +AQ A+ +VVS    L+  +     
Sbjct: 35  DSRANPPGADTLARDFAHVALQTGPFDG-----DVLAQ-AKRLVVSPGIDLRTPALAQAI 88

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
              + VV +  +  +  A          ++A+TG++GKS+V + V  + Q  G+S    G
Sbjct: 89  AAGVEVVGDI-ELFARAA-------DAPVVAITGSNGKSTVTTLVGHLAQACGVSVGVGG 140

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T               + L      L         +E SS  L+  R   +    G+
Sbjct: 141 NIGTP-------------ALDLLGQGHQL-------YVLELSSFQLETTR--SLPAQVGT 178

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+  DH+D + + +AY +AK+ L+ +                   +  RA +      
Sbjct: 179 VLNVSPDHLDRYDSYEAYRDAKLALYPQ---------------CRIALFNRADHNTLPSS 223

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                                   +  + +        L G     N L A  L  A G+
Sbjct: 224 HPRTLSFGPDAPDGDNFGVVGDWLMQGQTRLKRRDQLTLVGAHNEQNVLAALALGQAAGL 283

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +   +L  L+    +P R E V   +    +    A    + +     +  +  GR+ ++
Sbjct: 284 EMDAMLSALDSYRGLPHRCELVAERAGVRYVNDSKATNLGATQA---ALDGLELGRVWLI 340

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              GGD       ++      LA +  +  D P           I        E  +   
Sbjct: 341 --AGGDAKGQDLSVLAPALNQLAGLITLGQDGP----------AIAALRSDATEVVSIES 388

Query: 448 AIRTAIEMLNKQDVLVV 464
           A+  A +     D++++
Sbjct: 389 AVAVAADQARAGDIVLL 405


>gi|124007585|ref|ZP_01692290.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
 gi|123987068|gb|EAY26824.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
          Length = 525

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 108/369 (29%), Gaps = 32/369 (8%)

Query: 106 ASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           A R+    P+  ++ +TG+ GK+SV  F+ +I           G               T
Sbjct: 167 ARRIIKSMPQLKVIGITGSYGKTSVKHFLTRILSEKYNVVMTPGS------------YNT 214

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P  + +           +    + A   G D   L  +            D         
Sbjct: 215 PMGVTITIRNHIKPIHEIFVCEMGAKQIG-DIKELCNLAHPQIGILTAVADQHLDTFGSI 273

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                      + LPK+    +  D  Y K     AH              +        
Sbjct: 274 ENIQKGKFELIDALPKDGVGYLNFDYEYVKNHSPIAHVENHAYSLHQPDADYQARDLQYT 333

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               Q        K  +    L GE  + N LV   + +   +    +   ++ L  V  
Sbjct: 334 AKGMQFSVYHKNEKVMELETKLMGEANMSNILVCCAVALRFDVPIKNIQFAVKNLQPVKH 393

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPI 401
           R E          +   +       +M L  ++ I  G+ +++        +++     +
Sbjct: 394 RMELKRNPGGITILDDAFNSNPAGAKMALNVLKQIEGGQKVIITPGMIELAEKEYELNKV 453

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIE 454
           +G+   +  D AI+    P+   P      I  G+       +R        +A +  ++
Sbjct: 454 LGEQIAEHVDYAILV--GPKQTLP------IQEGLKNKNYPEDRLYIARNLTDANQHLMK 505

Query: 455 MLNKQDVLV 463
           +    DV++
Sbjct: 506 IAKAGDVVL 514


>gi|282866568|ref|ZP_06275611.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
 gi|282558615|gb|EFB64174.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
          Length = 464

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 138/413 (33%), Gaps = 45/413 (10%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA      +       + P++   +    L               +AV GT G
Sbjct: 70  ASCVVVSSAIRPDNPELVRAAELSVPVVHRSDALAALME---------GLRAIAVAGTHG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +       GL          +     +               S  S Q     
Sbjct: 121 KTTTTSMLAVALSGLGLD-PSYAIGGDLEGPGTNAAHGGGDIFVAEADESDRSFQKYV-- 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                    N+  DH   + +    + +      +++P  +  +
Sbjct: 178 ------------------PQVAIVLNVELDHHANYASMDEIYESFETFTGKVVPGGTLVV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                   +   +     G +V++ G  +G  + + K+       +VT+ + GK   F  
Sbjct: 220 SADQQGAVELTRRVRGQDGLQVVTYGEAEGADVRVHKITPRGLTSEVTVVLGGKYLTFTV 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG     NA+ A    +A+G+ +  +   +     V  R +  G  + G ++   YAH
Sbjct: 280 SVPGRHYALNAVAALAAGVALGVPAHNLASAIGTYTGVKRRLQLKG-EAAGVQVIDSYAH 338

Query: 365 TSNSLEMILKNIRTITSG-RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +   L+ +R   +G R++VVF      R Q     MG+ AL LAD ++V D  P  
Sbjct: 339 HPTEMAADLEAMRGAAAGSRLLVVFQPHLFSRTQELGTEMGQ-ALALADASLVLDIYPAR 397

Query: 423 EDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           EDP      E I               +    I  A+  M    D+++  G G
Sbjct: 398 EDPIPGITSELIIDAAKTAGADVTAVHD-KARIPAAVAGMAKPGDLVLTMGAG 449


>gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
 gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
          Length = 445

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A         
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEA--------- 152

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L +              +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 153 --ELQRESKKA-----DVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F           +   D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++ +     + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQNL-----LFVILGGMGKGQDFTPLRTALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|6634590|emb|CAB64484.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQVVGAKNDVSIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA   +  
Sbjct: 54 FIERAFENGAAVTLSE 69


>gi|121593081|ref|YP_984977.1| cyanophycin synthetase [Acidovorax sp. JS42]
 gi|120605161|gb|ABM40901.1| cyanophycin synthetase [Acidovorax sp. JS42]
          Length = 861

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 13/236 (5%)

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A + +             +            + +++     +  +     ++  ++ 
Sbjct: 605 PHVAAMASVCPGKVIFFAADRHHPVMATHRAQGNRVVYVDGDSIVAAEGSWRETISLREI 664

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGG 356
                    FQV N + A G    +G+    +   L          PGRF     + RG 
Sbjct: 665 PITRGGTIGFQVENVMAAIGAAWGVGLPWQTIRRGLAGFMNDSDNAPGRFNV--MDYRGA 722

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DY H  +++  +++ ++ + + +  VV    GDR         +I     D  ++ 
Sbjct: 723 TVIADYGHNPDAMRALVQAVQAMPARQRSVVISGAGDRRDQDIVEQTQILGQSFDDVVLY 782

Query: 417 DDNP-RSE---DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D   R     +   +  + + G P      E      AI  A+E L   D+ +V 
Sbjct: 783 QDACQRGRADGEVLALLRQGLQGAPRTRYVTEIHGEFLAIDHALERLQPGDLCLVL 838


>gi|295111740|emb|CBL28490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synergistetes
           bacterium SGP1]
          Length = 458

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 103/350 (29%), Gaps = 37/350 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTG++GKS+V + +  +   +  +    G     +                    S
Sbjct: 114 RLIGVTGSNGKSTVTALIGHMLNAAHRNVAVGGNLGRAA--------------------S 153

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             + +    V +E SS  L+      +       TNL  DH+++H + +AY  AK ++  
Sbjct: 154 VFAGREFDAVVLELSSFQLEW--THTLSSCVSIVTNLAPDHLNWHGSYEAYVAAKAKILS 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
              P          D   + +          +         +                  
Sbjct: 212 LRAPSG---WGIVQDRDVEALKAGGEERVITLSWEERPKHGMAGHIFMGEEEATLRLNGE 268

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               F +             +  +   + +          L+    +P R E  GT    
Sbjct: 269 MTPLFRYSETTLLGAHNLENVAMSVAALRLLGLDEDAKTLLKGFFPLPHRCERAGTVDGV 328

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +         +    +  +     GR +V+ G  G  +      + +  L  AD A++
Sbjct: 329 LYVDDSKGTNVAASVTAMTAL----PGRKVVILGGRGKGEDY--AALAEGVLREADAAVL 382

Query: 416 TDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E+ + I   +   G        +  +A+R A  +      +++
Sbjct: 383 -----LGEERDAIAGALRGAGFTAVTLAQDMEDAVRKAQTLARPGMTVLL 427


>gi|148657887|ref|YP_001278092.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus sp. RS-1]
 gi|189029029|sp|A5UZT9|MURC_ROSS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148569997|gb|ABQ92142.1| UDP-N-acetylmuramate--L-alanine ligase [Roseiflexus sp. RS-1]
          Length = 468

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 92/440 (20%), Positives = 137/440 (31%), Gaps = 62/440 (14%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYG 111
            DGH   P  IA GA+A+V +SA         A      P+L   +              
Sbjct: 49  HDGHD--PAWIA-GADALVATSAVRDDHVELSAARARGIPVLRRADL---------WREW 96

Query: 112 KHPENILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                ++AV GT GK++  + +   + Q  G   F IG            R   P+   +
Sbjct: 97  SQQRRVVAVAGTHGKTTTTALIALMLTQAGGNPGFLIG--GETPDLGIHARWGDPAAPLV 154

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                                   +  R    +       TN+  DH+D + +   Y  A
Sbjct: 155 --------------------VEADEYDRTFLALTPDVAVMTNVEWDHVDIYPSPDNYE-A 193

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--------RVLSVGYQGKFIHLKK 281
             RLF   + +    I+  DD  +  V                    S            
Sbjct: 194 AFRLFTRRVAQPQRLIVCGDDPGALRVANHPDAQQYGIEEAIARNPASCRLAPMDWMAAN 253

Query: 282 VCAIHNKQQVTISVEGKDFD-------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           V          +    +          +   L G+  V NAL A  +   +G++   + +
Sbjct: 254 VRYDGAMTNFDLWRYDRRTFGARLDGTYTMRLVGDHNVRNALAAIAVATLLGVERDAIAD 313

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD- 393
            L        RF+  G  + G  I  DYAH        L   R     R +VV+      
Sbjct: 314 ALAAYRGARRRFDIKG-EANGITIIDDYAHHPTEARATLAAARARFPQRRLVVYLQPHTF 372

Query: 394 -RDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIP--GFIEKGNRIEA 448
            R Q  R      A D AD+  + D  P  E  DP  +   +   I        GN +EA
Sbjct: 373 SRTQALRDA-WADAFDHADVVRIGDVYPARETGDPRTVAHALAGCIRHNDVQAVGNVVEA 431

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
             T   +L   DVL+  G G
Sbjct: 432 AATIGGLLRPGDVLLTLGAG 451


>gi|303228392|ref|ZP_07315225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516894|gb|EFL58803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 454

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 90/290 (31%), Gaps = 16/290 (5%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +        ++  E SS+ L+   +     +     N+  DH+  H+T + Y  AK R+F
Sbjct: 150 AAYHMPEGGYLVAELSSYQLET--IKSFCPLGAIVLNVTPDHLARHKTMENYAAAKARIF 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               P+    +   D                                 C      + T  
Sbjct: 208 MNQNPENFVVLNDDDPIVRAMKKDAHSKVLSISQHHKVDSGAYFEGNTCYAVLDGKATPV 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++ +             + N L    L  A+G++   +   +E+ H V  R E V T   
Sbjct: 268 IDTEHIHIKGSH----NIENILAVIALTYALGVEVEHIKHIIEQFHGVEHRLERVTTFHD 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  ++S+   L         + +++   G D+       M  +     ++  
Sbjct: 324 VTFYNDSKATNTDSVVKALDAFD-----KPVILLAGGHDKMTPLEDFMNIVKAHTKEVIF 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +   R E        +  G+       +  EA+    ++    D++++
Sbjct: 379 MGEAADRFESVA-----VKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLL 423


>gi|210622333|ref|ZP_03293102.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
 gi|210154321|gb|EEA85327.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 105/278 (37%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K    +  N+  DH++ H T + Y +AK R+F     K    ++ 
Sbjct: 169 ELSSFQLES--IKDFKPSVSAVLNITEDHMNRHHTMENYIDAKARVF-MNQDKNDFCVLN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++ + ++ +        +    K I+++    I +  +    ++         LP
Sbjct: 226 YDDELTRALAEKCNANVVFFSRLEKLEKGIYVENGDIIIDIDEKINLMKV----CELSLP 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + AA +    GID  ++ E L+    V  R EFV        +        +
Sbjct: 282 GGHNLENCMAAAAMAYVSGIDIEVIREVLKTFKAVEHRLEFVKEVEGVKYVNDSKGTNPD 341

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    ++          I++   G D+      ++ +IA       ++       +  +K
Sbjct: 342 STIKAVQAYEN-----PIILIAGGYDKGSTYDELL-EIAKKNVKTLVL-----LGQTADK 390

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G        +  EA++T  ++  + D++++
Sbjct: 391 IEEAARRIGFTDIHRVEDMKEAVKTCHDIAKEGDIVLL 428


>gi|194466687|ref|ZP_03072674.1| FolC bifunctional protein [Lactobacillus reuteri 100-23]
 gi|194453723|gb|EDX42620.1| FolC bifunctional protein [Lactobacillus reuteri 100-23]
          Length = 419

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 120/391 (30%), Gaps = 26/391 (6%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI------ 147
            V   R+ L+   +          + + GT+GK S  + ++Q  Q +G            
Sbjct: 22  RVKFLRRILTRLGN---PDQRFQTIHIAGTNGKGSTGTMLEQGLQNAGYRVGYFSSPALV 78

Query: 148 ----------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                        S         ++T   P  L+     +       +    +   +D  
Sbjct: 79  DDREQVKVNDHLISKKDFAMTYQKITEHLPADLSPDDITIFEWWTLIMLQYFADQKVDWA 138

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            ++         TN+         T  A  + ++         ++ A I  +      + 
Sbjct: 139 VIECGLGGRDDATNIISAPFISVITHIALDHTRILGPTIAKIAQAKAGIIKNGTKQVFLA 198

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316
                    ++    Q + + L +  A         + V  K +   F L G FQ  N  
Sbjct: 199 PHQEKDALTIIREKAQQQRVGLTQADAQSIVDGKAILKVNHKIYKVPFNLLGTFQSENLG 258

Query: 317 VAAG-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                             + L            +        I +D AH  ++ + + K 
Sbjct: 259 TVISVFNFLFQQGLVPSWQPLLSTLATVKIAGRMQKIVDYPPIILDGAHNPDAAKQLTKT 318

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           I  I   ++I+V G   D++      M KI   +AD  I+T  +  +   E   + +   
Sbjct: 319 ISKIPHNKVIMVLGFLADKNIS---QMVKIYQQIADEIIITTPDHPTRALE--ASALKSA 373

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +P  I   N  + +  A ++    D++VV G
Sbjct: 374 LPQAIIADNPPKGLVMAKKIAEPNDLIVVTG 404


>gi|6634658|emb|CAB64526.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA A +  
Sbjct: 54 FIERAFENGAAATLSE 69


>gi|218780970|ref|YP_002432288.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
 gi|226711863|sp|B8FBR7|MURC_DESAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218762354|gb|ACL04820.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 456

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 75/470 (15%), Positives = 152/470 (32%), Gaps = 62/470 (13%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
            EL+  L  + +   + K ++++   R  +       + G    GH        +G + +
Sbjct: 22  AELLLNLG-YQVSGSDIKESDITQ--RLAK-------LGGTIYRGHR-AENV--KGCDVV 68

Query: 72  VVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKSS 128
           VVSSA   ++    +      P++     R   L+           +  +A+ G  GK++
Sbjct: 69  VVSSAIRQENPETASAREQGIPVI----PRAEMLAELMRL------KYSVAIAGAHGKTT 118

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S V  +    GL    +     + S   + +L     I     ++       + + + 
Sbjct: 119 TTSIVADVLAAGGLDPTVV-IGGKLLSIGSNAKLGHGEFI-----VAEADESDGSFLKMS 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S                   TN+ R+H+D+++      +A  +  +++       +   
Sbjct: 173 PS---------------IAVVTNIDREHMDHYKDMDEIKDAFAQFVDKIPFYGLSVLCLD 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
            +     +          V         +    V       + T+    K        LP
Sbjct: 218 SEPVQDLI---PFINKRYVTYGLTTQADLQAGDVTTEGLTSRFTVRHNKKRLGRITLNLP 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   VYN+L +  + + + +    +   LE L  V  R E  G    G  +  DY H   
Sbjct: 275 GLHNVYNSLASIAVGLELNVPFENIKAALESLSGVHRRLETKG-KVGGIVVMDDYGHHPT 333

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP 425
            +   L+ +      R + V        + +  +    A     AD  +V    P  E P
Sbjct: 334 EIRTTLQAVNDSYPERRVGVIFQPHRYSRTQ-SLFEDFARSFYQADYLVVLPIYPAGEKP 392

Query: 426 E------KIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   +   +   G    I   ++  A++   + + + DVL+  G G
Sbjct: 393 IPGVDSVSLCKALKAYGHKHVIHAPSKESALQELDKTVREGDVLITLGAG 442


>gi|310814884|ref|YP_003962848.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
 gi|308753619|gb|ADO41548.1| UDP-N-acetylmuramate--alanine ligase [Ketogulonicigenium vulgare
           Y25]
          Length = 470

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 138/416 (33%), Gaps = 51/416 (12%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +  A      P++   +    L            ++ ++V GT 
Sbjct: 76  GAGVLVISSAIKAGNPELDAARARGIPVVRRADMLAELMRL---------KSNVSVAGTH 126

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G+    +     I ++  + R+     + +    S  +      
Sbjct: 127 GKTTTTTMVATLLDAGGIDPTVV-NGGIIHAYGSNARVGQGEWMVVEADESDGTFIR--- 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +       TN+  +H+++  T +A        F   +P    A
Sbjct: 183 -----------------LPTTIAIVTNIDPEHMEHWGTIEALRK-GFTDFVTQIPFYGLA 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D    + +  R  +                +                +G       
Sbjct: 225 VLCTDHPEVRALAARVTDRRVVTFGFNEDADIRAVNLTYEKGQAHFDIALPDGVIAGCTL 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG+  V NAL A  +   +G+D   +   L     V  RF  V     G  I  DY H
Sbjct: 285 PMPGDHNVSNALAAVAVARHLGMDHDAISAALAGFAGVGRRFTKVA-EVDGITIIDDYGH 343

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRS 422
               +  +++  R  TSG+++ V      R      +  + +   DLAD   +TD     
Sbjct: 344 HPVEIAAVMRAARQATSGKVVAV--HQPHRYSRLAHLFDEFSACFDLADYVGITDVYAAG 401

Query: 423 ED--PEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ED  P   R +++ GI             + +  + +R  +      D+LV  G G
Sbjct: 402 EDPIPGASRDDLVAGITAHGHPHAFAVTSEADLADVVRKYMA---PGDMLVCLGAG 454


>gi|303239793|ref|ZP_07326317.1| UDP-N-acetylmuramate/alanine ligase [Acetivibrio cellulolyticus
           CD2]
 gi|302592730|gb|EFL62454.1| UDP-N-acetylmuramate/alanine ligase [Acetivibrio cellulolyticus
           CD2]
          Length = 469

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 88/268 (32%), Gaps = 9/268 (3%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH+DY +       A ++    +           D+  S  + + + N     
Sbjct: 185 IVLNIEEDHLDYFKDINHIKQAFLKFMNLVPKDGYIIACADDENVSSILSQISTNVVTYG 244

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++           +           I    K       +PG   V N++ AA  C  +G 
Sbjct: 245 INSTNATWTARNIEFDDSGCASYDLIKSGQKVAAIKLRVPGIHNVSNSIAAAAACYTLGC 304

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D   +   LE       RFE  G      ++  DYAH  + ++  LK  ++    +I  V
Sbjct: 305 DIKDIEHGLEAFTGTHRRFEVKGV-VENIKVVDDYAHHPSEIKATLKAAKSTNHTKIWCV 363

Query: 388 FG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI-----RAEIIHGIPGFI 440
           F      R +       +   D AD  I++D     E D  +I        I       I
Sbjct: 364 FQPHTYTRTKLLLDEFSEAFSD-ADEVIISDIYSAREIDTGEIHSNVLSQRINAKSNNSI 422

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            K +    +    E  +  D+++  G G
Sbjct: 423 YKPDFNAIVEYLKENASSGDLVITMGAG 450


>gi|149914528|ref|ZP_01903058.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811321|gb|EDM71156.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 477

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 97/310 (31%), Gaps = 18/310 (5%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +    S         + VEA       +RL          TN+  +H+D+  T++     
Sbjct: 159 IHAYGSNARVGQGEWMVVEADESDGTFNRLPATI---AIVTNIDPEHMDHWGTEENLHR- 214

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    A+   DD   + ++ +  +          Q     +          
Sbjct: 215 GFYEFVSNIPFYGLAVCCTDDPDVQALVAKLTDRRVVTYGFNTQADIRAVNLRYEKGVAH 274

Query: 290 QVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                            P+PG+  V NAL A  +   +G+  + + E L     V  RF 
Sbjct: 275 FDVALQAEGTMIEGCTLPMPGDHNVSNALSAVAVARHLGMKRSEIREALAAFGGVNRRFT 334

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG    G  I  DY H    +  +LK  R    GR+I V      R         +   
Sbjct: 335 KVG-EVNGVTIIDDYGHHPTEIAAVLKAARQACDGRVIAV--HQPHRYSRLHHHFAEFCT 391

Query: 408 DL--ADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
               AD+  + +     EDP       + +   I  G        +  + +R   E    
Sbjct: 392 CFNEADVVAIAEVFAAGEDPIDGATRDDLVAGLIRAGHRHARAFNDLDDLVRLVREQARP 451

Query: 459 QDVLVVAGKG 468
            D++V  G G
Sbjct: 452 GDMVVCLGAG 461


>gi|15615130|ref|NP_243433.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           halodurans C-125]
 gi|30316130|sp|Q9K9S8|MURD_BACHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|10175187|dbj|BAB06286.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus halodurans
           C-125]
          Length = 450

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 135/416 (32%), Gaps = 74/416 (17%)

Query: 50  VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
            G + D +  + +AI +G   +V     + +   A I                       
Sbjct: 79  PGIRYD-NPIVEEAIKRGIS-VVTEVELASKVSEAEI----------------------- 113

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   +A+TG++GK++  S V ++ + S       G    ++S              
Sbjct: 114 --------VAITGSNGKTTTTSLVVEMLKGSAREPKVAGNIGVVASDV------------ 153

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                    +     + +E SS  L        +       N+   H+DYH +++ Y  A
Sbjct: 154 ------AREATADDVIVMEVSSFQL--MGTSHFRPKVAILLNIFDAHLDYHGSKENYVAA 205

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K ++ E +  ++      ADD    +V                     ++     +   +
Sbjct: 206 KKKIVENMKEEDYFVY-NADDPLVSKVAAETKATPIPFSRSTVVKSGAYVDGETYMFRGE 264

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++    +         LPG+  V N L A    + +G     +   L     V  R +FV
Sbjct: 265 KIVEKGDVV-------LPGDHNVDNVLAAMSAALLMGATKEQIHHVLSTFSGVEHRLQFV 317

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           GT           A    S    +++         IV+   G DR      ++   AL  
Sbjct: 318 GTAFERKWYNDSKATNILSTTAAIQSFTD-----PIVLLAGGLDRGNSFDDLIP--ALQK 370

Query: 410 ADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               ++       E   K+  A +  G+   +E     +A+R A+++    DV+++
Sbjct: 371 VKAVVL-----FGETKHKLAQAAMEAGVETIVEAERVEDAVRKALDVSANGDVILL 421


>gi|311104002|ref|YP_003976855.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
 gi|310758691|gb|ADP14140.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
          Length = 468

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 136/423 (32%), Gaps = 52/423 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA AIV S+A +  +          I VV      L+           +  +AV GT GK
Sbjct: 64  GAAAIVTSTAVAGDNPEVIAARAARIPVVPRAL-MLAELMRL------KRGIAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  +    G           ++S   + RL     I +    S  S        
Sbjct: 117 TTTTSLVASVLAA-GDLDPTFVIGGRLNSAGANARLGQGDYIVVEADESDASFLN----- 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  +    TN+  DH+D +    A   +    F + LP    A++
Sbjct: 171 ---------------LLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FD 301
            +DDA  +E+M     +         +   +   +V     + +  +    +D       
Sbjct: 216 CSDDANVREIM--PFVSRPITTYGLNEEAQVRAYEVQPAGTRMRFNVQRTHRDTLLPPLQ 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG------ 355
               LPG   V NAL A  +   +G+    + E L   H V  RF   G           
Sbjct: 274 VELNLPGLHNVRNALAAIAVATELGVADEAICEALSSFHGVGRRFTQTGDFPVPANHGGG 333

Query: 356 -GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADI 412
              +  DY H    +   L   R     R IV+        + +       ++    AD 
Sbjct: 334 TFTVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGT-ADA 392

Query: 413 AIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++T+     E P        +   +   G    +   +  E  +  ++ +   DV++V 
Sbjct: 393 VLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDFVRDGDVVIVM 452

Query: 466 GKG 468
           G G
Sbjct: 453 GAG 455


>gi|170288512|ref|YP_001738750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga sp.
           RQ2]
 gi|226722953|sp|B1L9R9|MURD_THESQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|170176015|gb|ACB09067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga sp.
           RQ2]
          Length = 430

 Score = 68.8 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 129/393 (32%), Gaps = 59/393 (15%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
              +   S  I+ +T I+ + ++R  K  +     L    P+ ++ +TGT GKS+  + +
Sbjct: 61  DCDVVYVSPGIKPDTSIIKLLSSRGAKLSTELQLFLDNVDPKKVVGITGTDGKSTATALM 120

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +  R G  +F  G   T +             +               +  +E SS  
Sbjct: 121 HHVLSRRGFKTFLGGNFGTPAV----------EALE----------GEYDYYVLEMSSFQ 160

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L       +        N+  DH+D+H + + Y ++K++        +           +
Sbjct: 161 LFWSERPYLSNF--LVLNISEDHLDWHSSFEEYVDSKLKPAFLQTEGDLFVY-------N 211

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           K + +  +  G R   + +        +   I + ++ T+                    
Sbjct: 212 KHIERLRNLEGVRSRKIPFWTGENFATERELIVHGKKYTLPGNY----------PYQTRE 261

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N L  + L + +  +    LE L     +P R E++G            A +++++   L
Sbjct: 262 NILAVSILYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYNDSKATSTHAVLGAL 321

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            N          VV    G   +    +  + A       I            +I  E+ 
Sbjct: 322 SNFDK-------VVLIMCGIGKKENYSLFVEKASPKLKHLI---------MFGEISKELA 365

Query: 434 HGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVV 464
             +         N  EA   A+E+  K DV+++
Sbjct: 366 PFVGKIPHSIVENMEEAFEKAMEVSEKGDVILL 398


>gi|326779864|ref|ZP_08239129.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660197|gb|EGE45043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 472

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 133/408 (32%), Gaps = 48/408 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V +  +          +   + V  +    L+       G+ P   LAVTGT+GK++ 
Sbjct: 70  LVVTAPGWQPDKPLFLAAAEAGVPVWGDVE--LAWRLRGDDGRKPAPWLAVTGTNGKTTT 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G                     ++   + +       ++VE 
Sbjct: 128 VRMLASILRAAGLRTEAVGNIG------------------VSLLDAVVGETEYDVLAVEL 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +AY  A  +         +     AD
Sbjct: 170 SSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRVYEGNTVACVYNVAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LF 304
            A    V +     GCR +             V       +  ++   K           
Sbjct: 226 PATEDLVREADVEEGCRAIGFTLGAPGPSQLGVVDGILVDRAFVADRHKQAQELAEVSDV 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AA L  A G+  A V + L        R E V        +    A 
Sbjct: 286 DPPAPHNIANALAAAALARAFGVQPAAVRDGLRAFRPDAHRIEHVADLDEVRYVDDSKAT 345

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L    +      IV    G  +      ++   A  L  + ++        D
Sbjct: 346 NTHATEASLAAYDS------IVWIAGGLAKGATFDELVIGAAKRLRGVVLI------GAD 393

Query: 425 PEKIRAEIIHGIPGFIEKG-NR------IEAIRTAIEMLNKQDVLVVA 465
              IR  +    P       +R       EA+  A E+    D +++A
Sbjct: 394 RALIREALTRHAPEVPVVDLDRTDTGAMSEAVARAAELARPGDTVLLA 441


>gi|316941823|gb|ADU75857.1| cyanophycin synthetase [Clostridium thermocellum DSM 1313]
          Length = 882

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 14/218 (6%)

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K   N   +             K    I+N +   + +  K+    +    E  + N+L 
Sbjct: 632 KNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLA 691

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           AA     + +    + + L   +      PGRF  V       ++ +DY H       ++
Sbjct: 692 AASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMG--DFKVMLDYGHNPAGYLEVM 749

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR--- 429
           K +  I + R++ V G  GDRD       G+I         + +D + R  +P ++    
Sbjct: 750 KFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGEVAGIL 809

Query: 430 --AEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             A I  G          +   A+  A+      D +V
Sbjct: 810 YDAVISSGTKKENVEIIYSEDRALEKALLDAQPGDFVV 847


>gi|325679015|ref|ZP_08158613.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
 gi|324109519|gb|EGC03737.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
          Length = 465

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 107/364 (29%), Gaps = 50/364 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P    A+TG+ GK++  + V +  +  G      G          +    T   +
Sbjct: 112 FFDLCPCKTYALTGSDGKTTTTTLVSEFLKAEGKRVHLGGNIGKALLPLVETISETDVAV 171

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                              E SS  L   R           TN+  +H++ H T + Y  
Sbjct: 172 ------------------CELSSFQLISMR---ESPDVAGITNIRPNHLNVHGTMEEYTQ 210

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A            S AI+  DD  +  +                      L++   +   
Sbjct: 211 A-KCNILYHQNAYSKAILSLDDEVTHGLADLVRGELAWFSIKEKPDNGAFLREDGMLCYN 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +   ++           +PG   V + L A  +     +    V +  ++   V  R EF
Sbjct: 270 ECGKVTEYV--HMNDIKIPGMHNVEDYLTAIAMTYG-EVKPETVAKIAKEFGGVEHRIEF 326

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +   +   L         +  ++   G D+     P M     +
Sbjct: 327 VRELDGVKYYNNSIASSPTRVLACLAAFD-----KKQIMIQGGSDKGVSFEP-MAAPICE 380

Query: 409 LADIAIV---TDDNPRSEDPEKIRAEIIH-------GIPGFIEKGNRIEAIRTAIEMLNK 458
              + I+   T D        KIRA +         GI   I   +  EA+ TA E   +
Sbjct: 381 KVKVLILMGQTKD--------KIRAAVEAAPNFKTSGI-KIITVKDMAEAVLTAREYAEE 431

Query: 459 QDVL 462
            D++
Sbjct: 432 GDIV 435


>gi|281418842|ref|ZP_06249861.1| cyanophycin synthetase [Clostridium thermocellum JW20]
 gi|281407926|gb|EFB38185.1| cyanophycin synthetase [Clostridium thermocellum JW20]
          Length = 882

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 14/218 (6%)

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K   N   +             K    I+N +   + +  K+    +    E  + N+L 
Sbjct: 632 KNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLA 691

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           AA     + +    + + L   +      PGRF  V       ++ +DY H       ++
Sbjct: 692 AASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMG--DFKVMLDYGHNPAGYLEVM 749

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR--- 429
           K +  I + R++ V G  GDRD       G+I         + +D + R  +P ++    
Sbjct: 750 KFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGEVAGIL 809

Query: 430 --AEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             A I  G          +   A+  A+      D +V
Sbjct: 810 YDAVISSGTKKENVEIIYSEDRALEKALLDAQPGDFVV 847


>gi|6634694|emb|CAB64542.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA A +  
Sbjct: 54 FIERAFENGAAATLSD 69


>gi|309779050|ref|ZP_07673817.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922115|gb|EFP67745.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 855

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 128/372 (34%), Gaps = 30/372 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+GT+GK++    +  +   SGL    +G T T   + Q  R+ T        A + L
Sbjct: 473 VAVSGTNGKTTTVRLITHLLASSGLR---MGMTGTDGVYIQGQRIDTGDCSGPRSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR------------DHIDYHQTQQA 225
               V     E +  GL +  L   +      TN+G             + +   ++   
Sbjct: 530 LHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLNYISTVEDLAVLKSVIV 589

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A   +          A +      S        +            + + +     +
Sbjct: 590 QNVAPRGMAVLNAADPMVARMADGCPGSVTFFAHDPSLPTMARHRAQGKRVVFVDGPEIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             +      +   D          FQV NA+ +     A+GID  ++   L         
Sbjct: 650 VAEGANETRIALADIPLTRNGTIGFQVENAMSSIAAAWALGIDWTVIRRGLATFVNDAAT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRP 400
            PGRF     + +G  +  DY H  ++++ +   + T+ + R +VV    GD RD+  R 
Sbjct: 710 APGRFNL--FDYKGATLIADYGHNPDAIQALCNAVATMPAQRRMVVISGAGDRRDEDIRK 767

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAI 453
              +I   + D  ++ +D   R     ++ A +  G+          E      AI TA+
Sbjct: 768 Q-TQILGGVFDDVVLYEDQCQRGRADGEVLALLREGLQGASRTSRVEEIRGEFLAIDTAL 826

Query: 454 EMLNKQDVLVVA 465
             L   D+ ++ 
Sbjct: 827 GRLQPGDLCLIL 838


>gi|238650471|ref|YP_002916323.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia peacockii str.
           Rustic]
 gi|259509781|sp|C4K124|MURC_RICPU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238624569|gb|ACR47275.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia peacockii str.
           Rustic]
          Length = 485

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 141/438 (32%), Gaps = 63/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++   +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNKLTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDEITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-----PI 401
             V        I  DYAH    ++  L   + I + +   V          +        
Sbjct: 330 TKVA-EYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
           M   A   ADI  +TD     E+P          +KI     H    F+ + +  +A+  
Sbjct: 389 MLCFAD--ADILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELD--DAVGV 444

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I+     D++++ G G+
Sbjct: 445 IIDNAASGDMIIMMGAGN 462


>gi|304315705|ref|YP_003850850.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777207|gb|ADL67766.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 465

 Score = 68.4 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 121/411 (29%), Gaps = 41/411 (9%)

Query: 67  GAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V ++A    +         N P +   +    L     +      +  + V G+ 
Sbjct: 67  GANLVVYTAAVKEDNPEMIRARELNIPTI---DRATLLGEIMKKY-----KYGIGVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  + +        +     +     + R+               S      
Sbjct: 119 GKTTTTSLISVLLEEMNYDPTVL-VGGEVDVIGGNVRVGKSDYFVTEACEYTDSFLKFY- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +    F  L+PK+   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FTQFANLVPKDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD+ +  V+K                      K                   +F  
Sbjct: 217 VACGDDSNTMSVLKNVDRNIITFGIDSNCTWNAKNIKFDEKGFPSFDVYYNGVFIQNFEL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  +YNAL    +C  +G+D       ++K      RFEF GT   G  I  DYAH
Sbjct: 277 SIVGKHNIYNALATLAVCHLLGVDIKSTPSIIKKFKGTHRRFEFKGTLD-GAIIIDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L +       RII +F      R           + D ADI I+TD     E
Sbjct: 336 HPTEIKATLSSALNYPHNRIICIFQPHTYSRTYSLLQDFA-TSFDNADITIITDIYAARE 394

Query: 424 D------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   + +   I              + +     ++   D+++  G G
Sbjct: 395 KDTGIVHAKDLAKLIRDRGNETYYIKEFTDIVDYLRSIIKSGDLVITIGAG 445


>gi|256005655|ref|ZP_05430613.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
 gi|255990413|gb|EEU00537.1| cyanophycin synthetase [Clostridium thermocellum DSM 2360]
          Length = 824

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 14/218 (6%)

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K   N   +             K    I+N +   + +  K+    +    E  + N+L 
Sbjct: 574 KNNSNPVVKEHMQKGGKALYVDKDTIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLA 633

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           AA     + +    + + L   +      PGRF  V       ++ +DY H       ++
Sbjct: 634 AASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMG--DFKVMLDYGHNPAGYLEVM 691

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR--- 429
           K +  I + R++ V G  GDRD       G+I         + +D + R  +P ++    
Sbjct: 692 KFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGEVAGIL 751

Query: 430 --AEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             A I  G          +   A+  A+      D +V
Sbjct: 752 YDAVISSGTKKENVEIIYSEDRALEKALLDAQPGDFVV 789


>gi|125974689|ref|YP_001038599.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
 gi|125714914|gb|ABN53406.1| cyanophycin synthetase [Clostridium thermocellum ATCC 27405]
          Length = 882

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 14/218 (6%)

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K   N   +             K    I+N +   + +  K+    +    E  + N+L 
Sbjct: 632 KNNSNPVVKEHMQKGGKALYVDKDSIFIYNGKTAEVLMSVKEIPITYGGMIECNIENSLA 691

Query: 318 AAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           AA     + +    + + L   +      PGRF  V       ++ +DY H       ++
Sbjct: 692 AASALYGLNLSIEAIRKGLATFNPDMESNPGRFNIVDMG--DFKVMLDYGHNPAGYLEVM 749

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR--- 429
           K +  I + R++ V G  GDRD       G+I         + +D + R  +P ++    
Sbjct: 750 KFLDKIDAKRLVGVIGMPGDRDDLSIYKAGEICSKCFSKIYIKEDSDLRGREPGEVAGIL 809

Query: 430 --AEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLV 463
             A I  G          +   A+  A+      D +V
Sbjct: 810 YDAVISSGTKKENVEIIYSEDRALEKALLDAQPGDFVV 847


>gi|182439212|ref|YP_001826931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467728|dbj|BAG22248.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 476

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 133/408 (32%), Gaps = 48/408 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V +  +          +   I V  +    L+       G+ P   LAVTGT+GK++ 
Sbjct: 74  LVVTAPGWQPDKPLFLAAAEAGIPVWGDVE--LAWRLRGDDGRKPAPWLAVTGTNGKTTT 131

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G                     ++   + +       ++VE 
Sbjct: 132 VRMLASILRAAGLRTEAVGNIG------------------VSLLDAVVGETEYDVLAVEL 173

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +AY  A  +         +     AD
Sbjct: 174 SSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRVYEGNTVACVYNVAD 229

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LF 304
            A    V +     GCR +             V       +  ++   K           
Sbjct: 230 PATEDLVREADVVEGCRAIGFTLGAPGPSQLGVVDGILVDRAFVADRHKQAQELAEVSDV 289

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AA L  A G+  A V + L        R E V        +    A 
Sbjct: 290 DPPAPHNIANALAAAALARAFGVQPAAVRDGLRAFRPDAHRIEHVADLDEVRYVDDSKAT 349

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L    +      IV    G  +      ++   A  L  + ++        D
Sbjct: 350 NTHATEASLAAYDS------IVWIAGGLAKGATFDELVIGAAKRLRGVVLI------GAD 397

Query: 425 PEKIRAEIIHGIPGFIEKG-NR------IEAIRTAIEMLNKQDVLVVA 465
              IR  +    P       +R       EA+  A E+    D +++A
Sbjct: 398 RALIREALTRHAPEVPVVDLDRTDTGAMSEAVARAAELARPGDTVLLA 445


>gi|114331393|ref|YP_747615.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
 gi|114308407|gb|ABI59650.1| cyanophycin synthetase [Nitrosomonas eutropha C91]
          Length = 862

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 133/372 (35%), Gaps = 29/372 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ A  +  I + + +             F  +  + T        A + L
Sbjct: 472 IAVTGTNGKTTTARLIANILEHNRMRVGIACTDGV---FVNNQCVDTGDCSGPKSARNIL 528

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQAYFNAKMRLF 234
               V    +E +  G+ +  L          TN+GR          T +     K  + 
Sbjct: 529 FHPDVDAAVLETARGGILREGLGFDYCDVAVVTNIGRGDHLGLANINTAEELAAVKRTIV 588

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCA 284
           E + P++  A++ ADD     +      +                     + I+L++   
Sbjct: 589 ENVNPEKGVAVLNADDPLVLGMASHCPGSVTFFSCNSRHPVILEQRIQGKRVIYLEEQHI 648

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----H 340
           +  +      +   +          FQ+ N + A G  +A G+D +++   L        
Sbjct: 649 VVTEAGTERRISLSNIQLTKNGMISFQIENVMAAIGAGLASGLDWSIICAGLADFVSDAQ 708

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGRF     N R   +  DY H  +++E ++  I  I + +  VV    GDR      
Sbjct: 709 TVPGRFNL--FNYREATLIADYGHNPDAMEALICAIDHIPAKKRTVVISAAGDRRNEDIR 766

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAI 453
           +  +I  D+ D  ++  D   R     ++   +  G+          E     +AI TA+
Sbjct: 767 LQTQILGDVFDEVVLFQDKCQRGRADGEVLGLLREGLENAKRVRKVSEIRGEFKAIDTAL 826

Query: 454 EMLNKQDVLVVA 465
             L   ++ ++ 
Sbjct: 827 TNLEAGELCLIL 838


>gi|218961097|ref|YP_001740872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729754|emb|CAO80666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 472

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 111/357 (31%), Gaps = 40/357 (11%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                    I+AVTG++GKS+  S +  I    G  S   G                   
Sbjct: 122 YRIKAKDSKIIAVTGSNGKSTTVSLIHHILTGLGKKSLLAGNIGD--------------- 166

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
              A     +   G  ++ +E SS  LD   ++  +       N+  DHID + + + Y 
Sbjct: 167 ---AFCSYDIEKPGWDYIVLEISSFQLDL--INSFQPDVAVLLNITPDHIDRYNSFEDYA 221

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            +K+ +F+     ++  + +                    LS                 +
Sbjct: 222 LSKVNIFKNQEMTDTAVLFWDSPEVKHFTKDIKARKLYFSLSPNDNAFAYLANNYIQFGS 281

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +V +S                   NA+ A     A+  +   + E ++    +P R E
Sbjct: 282 ETKVPLSYFAIKGPHN--------YANAMSAMLAVYALIPEPTKIAEAVKGFKSLPHRLE 333

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +V T           A  ++S+   L +         I +   G D+ +    ++     
Sbjct: 334 YVDTIKGVSFYNDSKATNTDSVRSALNSFEQ-----PIRIIMGGSDKGEDY-SVLAADLQ 387

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                A +T D        +   +   G        +    +R A    ++ D++V+
Sbjct: 388 KKVKKAYLTGDT------REKMRKTFSGKIPLECIADFELTVRKAFSDSDEGDIIVL 438


>gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|118595652|sp|Q11RH3|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 450

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 136/419 (32%), Gaps = 50/419 (11%)

Query: 59  FIPQ------AIAQGAEAIVVSSAYSLQDFSATIRSNTPI------LVVDNTRKFLSLFA 106
           FI +      A  QG    V S    L           P       L+     + +S   
Sbjct: 40  FIAELQQAGIAFEQG----VHSEEKILSAQLIVKSPGIPEKAPIMKLIRSKAIEVISEIE 95

Query: 107 SRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                 HP    +A+TG++GK++       I  + G S    G   T             
Sbjct: 96  FAYRHIHPGAKFIAITGSNGKTTTTLLTHHILAQLGYSVGLGGNIGTS------------ 143

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                      +  +      +E SS  LD       K       N+  DH+D ++ +  
Sbjct: 144 -------LARQIIHEKKDVYVLELSSFQLDDMYTF--KADVAVLLNITPDHLDRYEYKFE 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
            + A      + L      I Y++D+  +   K+ H    R + V  +  +         
Sbjct: 195 NYTASKFRIFQNLTPADYYITYSEDSVIES-YKKDHPVDARYVPVSLKQLYSAGAYSDEK 253

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +               FPL G+    N + A    ++IG D    +  ++     P R
Sbjct: 254 TIQIHALDDTVVTCNTEEFPLQGKHNYINIMAALNAAVSIGADIHKSIASIKSFRNAPHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            EFVG+      +    A   +S+   L +++T      +V+   G D+      I   +
Sbjct: 314 LEFVGSIYGVKFVNDSKATNVDSVWYALDSMKT-----PVVLIVGGVDKGNDYSQIEALV 368

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  +  +  DN       K+ +     +    E  + +EAIR A +   K D +++
Sbjct: 369 KEKVHTVVALGKDNS------KVLSGFASMVSEIKEAHSMVEAIRIAHDSAKKGDTVLL 421


>gi|94501898|ref|ZP_01308408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
 gi|94425951|gb|EAT10949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
          Length = 446

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 132/389 (33%), Gaps = 52/389 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I+ S    L         +  + VV +  +  +  A+         I+A+TG++ KS
Sbjct: 71  AARIIASPGIPLATDEIQRAIDAGVPVVSDI-QVFAEAANA-------PIIAITGSNAKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ ++ GL +   G   T               + L        +  +    +
Sbjct: 123 TVTTLVGEMAKQCGLKAAVGGNLGTP-------------ALEL-------LNSDIDVYVM 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+    + +     +  N+  DH+D + + + Y+  K     ++      A+I 
Sbjct: 163 ELSSFQLEA--TEHLNAKVATVLNISPDHLDRYDSYEGYYQTK----YKIFNGCEKAVIN 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD      + +     C                +       Q+ +  +         + 
Sbjct: 217 LDDN-----LAQPKTLNCPEQIGFSIDGKGADFVLDRTAQPWQLIVEGDALLSVDQLKIK 271

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L    G+D   +L+ L+    +  R +++                  
Sbjct: 272 GLHNYSNALAALALGHGFGLDMDGMLKALKSFPGLDHRCQWIKQVDEVDFYNDSKGTNVG 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + E  LK +    + RI+++ G  G +D     ++  +        IV       +D + 
Sbjct: 332 ATEAALKGLGPEYAKRIVLMLGGVG-KDADF-KVLRPVIDQYVSKVIV-----YGQDQDI 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           I  + + G+       +R E+   A EM 
Sbjct: 385 IAKD-LSGVD-----LDRAESFEQAFEMA 407


>gi|479430|pir||S33854 hypothetical protein - Wolinella succinogenes
          Length = 67

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREI 492
           IH     +++ +R++AIR A++ L  Q+VL++ GKG E   I+ + +K    D + +   
Sbjct: 1   IHHCQKCVKEPDRVQAIRRAVKELEAQEVLLILGKGDEAEQIIGS-QKIPMKDRETVLSA 59

Query: 493 LGLI 496
           LG I
Sbjct: 60  LGEI 63


>gi|312876350|ref|ZP_07736335.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796844|gb|EFR13188.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 428

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 141/405 (34%), Gaps = 43/405 (10%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +A+ +  + +VVS    L      +     I V+          A R      +NI+A+
Sbjct: 34  DEAVDK-VQLVVVSPGVPLSKRPLVLAHKKGIEVIGEI-----ELAYRFCK--SKNIVAI 85

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  + V +I ++        G          +                     
Sbjct: 86  TGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPFIDTIETS------------------S 127

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +E SS  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE +   
Sbjct: 128 KNTIFVLEISSFQLET--IKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEM 185

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               + Y ++     +     N      +       + ++K       +  T  V  KD 
Sbjct: 186 GYTVLNYDNNITRDLIGLAKGNVIVFSKNKSQFENMVFVEKDTIYFTFEGKTQEVMKKDE 245

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   +PGE  + NAL A    +  GI+   + + L+    V  R EFV   +       
Sbjct: 246 IF---IPGEHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFVAEINGIKFYND 302

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                +++ E  L+   +      I++   G D+ +        +         +     
Sbjct: 303 SKGTNTDAAEKALRAFES-----PIILIAGGYDKGESF-EKFASLVAKKVKKVFL----- 351

Query: 421 RSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +   KI +E+   G   F       EA+R + E     D++++
Sbjct: 352 LGQTKHKIASELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLL 396


>gi|6634625|emb|CAB64504.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
 gi|6634628|emb|CAB64506.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
 gi|6634631|emb|CAB64508.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
 gi|6634637|emb|CAB64512.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI  A   GA   +  
Sbjct: 54 FIETAFENGAAVTLSD 69


>gi|157828210|ref|YP_001494452.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932913|ref|YP_001649702.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           Iowa]
 gi|166224724|sp|A8GRB9|MURC_RICRS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029027|sp|B0BWS0|MURC_RICRO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157800691|gb|ABV75944.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908000|gb|ABY72296.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia rickettsii str.
           Iowa]
          Length = 485

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 63/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDEITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-----PI 401
             V        I  DYAH    ++  L   + I + +   V          +        
Sbjct: 330 TKVA-EYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
           M   A   ADI  +TD     E+P          +KI     H    F+ + +  +A+  
Sbjct: 389 MLCFAD--ADILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELD--DAVGV 444

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I+     D++++ G G+
Sbjct: 445 IIDNAASGDMIIMMGAGN 462


>gi|20141408|sp|P56947|CPHA_SYNY8 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|13516214|gb|AAF43647.2|AF220099_2 cyanophycin synthetase [Geminocystis herdmanii PCC 6308]
          Length = 874

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 10/132 (7%)

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
           +  PGR      + +   + +DYAH       +   ++     R+ V+ G G  RD+   
Sbjct: 726 NQTPGRMNL--FDMKDFSVLIDYAHNPAGYLAVGSFVKNWKGDRLGVIGGPGDRRDEDLM 783

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTA 452
            ++GKIA  + D  I+  DD+ R  D   +   I  GI        + +  +  EAI T 
Sbjct: 784 -LLGKIASQIFDHIIIKEDDDNRGRDRGTVADLIAKGIVAENPNASYDDILDETEAIETG 842

Query: 453 IEMLNKQDVLVV 464
           ++ ++K  ++V+
Sbjct: 843 LKKVDKGGLVVI 854


>gi|313891497|ref|ZP_07825110.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
 gi|313120074|gb|EFR43253.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
          Length = 463

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 137/429 (31%), Gaps = 55/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   PQ I   A+ ++VS+A S  +       +   P+    +        A+ L G  
Sbjct: 57  GHN--PQNIKN-ADVLIVSTAISKNNSEVLEAKKHKIPVFHRSDL------LAAILCG-- 105

Query: 114 PENILAVTGTSGKSSV-ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               + V G  GKS+  A   +  C      +  +G    +     ++       +    
Sbjct: 106 -GKSICVAGAHGKSTTSAMIGKVFCDAEKHPTVVLG--GKVDYLNGNSIFGNGEFVIAEA 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S  S                               TN+  DH+D++ T +   NA ++
Sbjct: 163 DESDGSFLKFN--------------------PFISVITNIEDDHLDHYLTVENIKNAFIK 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +        I+  D+   K ++ +               ++  + K     +     
Sbjct: 203 FINQTDKINGNTILCIDNEGVKSILPKLDKNSYITYGTSDNAEYKAINKRYIDSHMMFDV 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E         +PG   V NAL A    +  GID   + + L + + V  RF+   + 
Sbjct: 263 YHKESFLGTVSLMIPGTHNVRNALAALVTGLICGIDFKTIAKSLMEFNGVKRRFQIKYSG 322

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLAD 411
                I  DYAH    +   LK  +     R+I  F      R    +      A D AD
Sbjct: 323 EVK--IVDDYAHHPTEIMSTLKAAKECGKHRVICAFQPHRYSRTNLLKYEFAN-AFDNAD 379

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIP--GFIEKGNRI---EAIRTAIEMLNKQD 460
           I  +TD     E P      + +   I    P        N     EAI+     + K D
Sbjct: 380 IIFITDIYSAGEKPVNGISGKTLVDLIKEKHPTKKITYIKNMEDLPEAIK---NEMQKDD 436

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 437 MIITMGAGN 445


>gi|298531031|ref|ZP_07018432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509054|gb|EFI32959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 433

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 124/399 (31%), Gaps = 71/399 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+ +VVS   SL        +   ++        L   AS    +    ++AVTGT+G
Sbjct: 73  QGADLVVVSPGISLAMVRGLCPAGQTVI------SEL-ELASWFISEP---VIAVTGTNG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +Q++ +++G   F  G               TP           LS +    +
Sbjct: 123 KTTTCMLIQKVLEKAGRRVFTGGNIG------------TPLS------DHVLSGKRADIL 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L      G     G   N   +H+D+H+++  YF AK               
Sbjct: 165 VLEVSSFQLQ--GCSGFTPHVGVLLNFSANHLDHHESEDEYFRAK--------------- 207

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                    ++  R       VL +  + +     ++ +       T             
Sbjct: 208 --------MQLFARQGPMDLAVLPLDLRARVESDFRIKSNITYFAPTGRFHC------PG 253

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG     N   A   C  + +   +  + L +    P R E    +     I    A T
Sbjct: 254 LPGAHNQANMEAAMLACGFVDVSRNIFDQALLEFVPPPHRQEVFLQDKGVRYINDSKATT 313

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             ++   LK   +            GG    G   ++     + A    +        D 
Sbjct: 314 LEAMTAALKAFDSPIR------LLAGGRYKGGDFSLLAGTLQEKAAKVYL------FGDS 361

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +I  +            +  +A   A++     D +++
Sbjct: 362 REIFEDAWKNSADMEHFADLEQAAARAVQEAGPGDNVLL 400


>gi|6634646|emb|CAB64518.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQVVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA A +  
Sbjct: 54 FIERAFENGAAATLSD 69


>gi|85712535|ref|ZP_01043583.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
 gi|85693669|gb|EAQ31619.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
          Length = 455

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 163/447 (36%), Gaps = 73/447 (16%)

Query: 27  ERKINEVSSDSRHIQAG--WIFVAIVGNKEDGHLFI-------PQAIAQGAEAIVVSSAY 77
           + +I     DSR    G   I V +VG       ++          +A  A+ IVVS   
Sbjct: 41  DIRI----FDSREHPPGLDDI-VDLVGT-----EYVTTGGWRLEDLLA--ADLIVVSPGL 88

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
             +D    +  +  + +V +         ++L  +    ++AVTG++GKS+V + V+Q+ 
Sbjct: 89  DARDADIQMARDAGVPIVGDV-----EIFAQLNQRP---VVAVTGSNGKSTVTTLVEQMG 140

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           Q  G      G                   +           Q      +E SS  L+  
Sbjct: 141 QYHGYRWVAAGNIGVP----------VLDAL----------QQDADAYVLELSSFQLETT 180

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           R   +KL A +  N+  DH+D + ++Q+YF AK+ +F          +   +    +   
Sbjct: 181 R--SLKLNAAALLNVSADHLDRYDSEQSYFEAKLNIFNHAS------VSVLNRQDQQHWP 232

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K   ++   V        +  +K    I   +  +I      F       G   + N   
Sbjct: 233 KIVPDSVVTVGVDESVSDYGLVKDDAGIAMTRNGSILARADRFALA----GTHNLVNIQA 288

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  L   +G+     +  +     +P R + V        +    A    + E  +  +R
Sbjct: 289 ALALAETLGLSPDKGIAAIADFTGLPHRCQVVYEAQGVRWVDDSKATNIGATEAAINGLR 348

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            + +GR+I++ G  G     K     ++   L+ + ++        D +KI AE+  G  
Sbjct: 349 PMINGRLILIAGGDG-----KGAQFTQLLPVLSQVDVLLTI---GRDGKKI-AELRKGAR 399

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +   A++TA ++   +D +V+
Sbjct: 400 YCEHLSD---AVKTAQQIAEAEDWVVL 423


>gi|149202203|ref|ZP_01879176.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. TM1035]
 gi|149144301|gb|EDM32332.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. TM1035]
          Length = 467

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 131/415 (31%), Gaps = 47/415 (11%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +     +   P++        L            ++ +AV GT 
Sbjct: 70  GAAVVVISSAIKPGNPELDEARKRGLPVVRRAEMLAELMRL---------KSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++  + G+    +     I ++  + R+                      
Sbjct: 121 GKTTTTTLVAELLVKGGIDPTVV-NGGIIHAYGSNARMGQGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++    +         F   +P    A
Sbjct: 163 MVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGNIERLRQ-GFYDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--F 302
           +   D    + ++ R  +          Q     +                         
Sbjct: 219 VCCTDHPEVQALVGRITDRRVMTYGFNAQADVRAVNLHYEKGVAHFDVALQAEGRMIEGC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAVAVARHLGMKGDEIRTALASFGGVNRRFTRVG-EVNGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    +  +L+  R  T+GR+I V      R      +          AD+  + +   
Sbjct: 338 GHHPVEIAAVLRAARQATTGRVIAV--HQPHRYTRLSSLFDDFCGCFNEADVVAIAEVYA 395

Query: 421 RSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             EDP       + +   I HG        +  +  R   E     D++V  G G
Sbjct: 396 AGEDPIPGASRDDLVAGLIRHGHRHARAIRDEDDLERLVREQAGPGDMVVCLGAG 450


>gi|28493193|ref|NP_787354.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Tropheryma
           whipplei str. Twist]
 gi|28476234|gb|AAO44323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei str. Twist]
          Length = 528

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 134/429 (31%), Gaps = 63/429 (14%)

Query: 62  QAIAQGAEAI------VVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF---ASRLY 110
            AI  GA  +      +          S  I  + P++     R+   LS          
Sbjct: 106 DAI--GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRD 163

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
             +    + +TGT+GK++ A     +  + G      G   T                  
Sbjct: 164 KVNTCPWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGTP----------------- 206

Query: 171 AKALSYLSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               +  + +G  ++ VE SS  L     H    +K  + +  NL  DH+++H  ++ Y+
Sbjct: 207 -VLDAVRNPKGFDYLVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYY 265

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--------HL 279
            AK R++              D+   K V +       R +  G     +         L
Sbjct: 266 CAKSRVYHGTTGFC--VYNLDDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGIL 323

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                +  ++   + +   +      L     + + L A  L  ++  +   +   L++ 
Sbjct: 324 CDRAFLSARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDEF 383

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            + P R E V        +    A   +++   L N       R+I++FG    +     
Sbjct: 384 CLSPHRTEVVAKEMGVMWVNDSKATNPHAVIASLSNFS-----RVILIFGGLM-KGVDVS 437

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEM 455
            I  +    +    +V   N      +     I       +   +      EA+  A  +
Sbjct: 438 GIFDRFYETI-KAVVVIGKN------QSFVGNIK--CKKIVCIPDSNDPMSEAVAAADLL 488

Query: 456 LNKQDVLVV 464
               D +++
Sbjct: 489 ATPGDTVLL 497


>gi|302875394|ref|YP_003844027.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307688992|ref|ZP_07631438.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578251|gb|ADL52263.1| Mur ligase middle domain protein [Clostridium cellulovorans 743B]
          Length = 471

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 100/320 (31%), Gaps = 16/320 (5%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             I++ +   L D          +++V N  K           +     + V G+SGK++
Sbjct: 64  SGIIIDN-CDLIDLKNLSSKGIGVILVKNLNKAYEDIVQLYRKQFDIPFVQVIGSSGKTT 122

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  I +    +       ++ S  A +    T             +      +   
Sbjct: 123 TKEMLGSILRTKLNTLVSFENLNSPSGVAYNLLKLT-------------AKHQAAVLETG 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S G+       I+      T + R H+    + +    AK      L P+    I   
Sbjct: 170 MRSKGVISRSTSIIQPDYVIVTCIHRAHLVTVGSLENIIKAKSEFIGFLSPESLVII--N 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D  + + +      G  +     +   I  K++     K          + D      G
Sbjct: 228 GDDENCKKLPLDQYQGKVLTFGMSKSCDIWAKEIQYDDFKMHFKACTRNLEIDCTINTIG 287

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            + V NAL A  L + +G     + E L +   +  R + V  N     I   +    +S
Sbjct: 288 IYNVLNALAAIILSLNLGFSKQEIQEGLLQFKPMYNRLQVVKRNKNFCIINDTFNANPDS 347

Query: 369 LEMILKNIRTITSGRIIVVF 388
              +++ I+    G+ I++ 
Sbjct: 348 TIALVEEIQNFAQGKPIILV 367


>gi|289640756|ref|ZP_06472927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
 gi|289509332|gb|EFD30260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
          Length = 475

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 66/456 (14%), Positives = 132/456 (28%), Gaps = 33/456 (7%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVV 73
           ++    +  +   +  +  V  DSR + AG +FVA+ G + DGH F   A   GA A++ 
Sbjct: 10  VVCGGRLDAVDDHDAAVTGVVIDSRQVAAGALFVAVAGERVDGHDFAAAAAGAGAVAVLA 69

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +    +              +    R            +    ++AVTG++GK++    +
Sbjct: 70  ARPVGVPAVVVADPVAALAALAAQVRT-----------RSSATVVAVTGSAGKTTTKDLL 118

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +    G +    G  +  +       +T   P      L   +       ++      
Sbjct: 119 ADLLGELGPTVAAAGSFN--NEIGLPLTVTRIEPATRFAVLEMGARGPGHIAAL----CE 172

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L + R+  +  +  +      D        +                    ++ ADD   
Sbjct: 173 LARPRIGVVLNVGSAHLGQYADGRAGIARAKGELAEAASDA---------VVLNADDPLV 223

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +  RA                 H  +V      +   ++   +    L  +       
Sbjct: 224 AGMAARARGEVITFGEGERADVRAHDVRVGDDGRARFDLVAAGERHPVALTLVGEHQVGS 283

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
               AA         +               R E   T++    I   Y     S+   L
Sbjct: 284 ALAAAAVAIRLGLPPARAAEALSRARARSRWRMEVAVTDTGVTVINDAYNANPESMRAAL 343

Query: 374 KNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKI 428
           K +  ++ GR    V G     G     +   +G++ + L  +  +   +  R       
Sbjct: 344 KTLVDLSRGRRAWAVLGGMEELGASADDEHDALGRLVVRLGVEQLVAIGERARRIHLGAS 403

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 G    +   +  +A     E L   DV++V
Sbjct: 404 LEGSWSG--ESVWVADVEQACTLLREQLVPGDVVLV 437


>gi|78042912|ref|YP_360890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|122063239|sp|Q3AAE4|MURD_CARHZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77995027|gb|ABB13926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 451

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 142/433 (32%), Gaps = 70/433 (16%)

Query: 64  IAQGAEAIVVSSAYS----------LQDFSATIRSNTPILV----------VDNTRK--- 100
           I +GA+ ++     S           ++    +    P++           V  T +   
Sbjct: 27  IKRGAKVVLTDKKMSLPVDEELKKLAEEGVELVLGGYPLVKDWELLVVSPGVPLTEEPIA 86

Query: 101 --------FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
                    L       Y +    I+AVTGT+GK++  S++ ++ + +G  +   G    
Sbjct: 87  YSLKEGIPVLGEI-ELAYKELKAPIIAVTGTNGKTTTTSWIGEVLKIAGFKTLIAGNIGY 145

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                                      +    VS+E SS  L+   +   K       NL
Sbjct: 146 PLI--------------------EAVEEEWDAVSLEVSSFQLET--IKSFKPKVAVLLNL 183

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+D H+T + Y  AK R+F      +   + Y        +         RV     
Sbjct: 184 TPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNY----DDPRIRSLGRKTPGRVFYFSQ 239

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           + +      V       +     E        PLPG   + NAL     C + G+    +
Sbjct: 240 KEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENALATVAACWSFGVSGKNI 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              L     V  R E V   +    +        +S    L +       R IV+   G 
Sbjct: 300 ERGLRNFQGVAHRLEKVAEINGVLYVNDSKGTNPDSTIKALNSYE-----RPIVLIAGGR 354

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRT 451
           ++        G++A ++ +    T      E  E+++  + + G   ++   +  +A++ 
Sbjct: 355 NKGNS----FGELAREIREKVRFTI--LVGECREELKEALEMVGYDKYVVAESFEDAVKK 408

Query: 452 AIEMLNKQDVLVV 464
           A E+    DV+++
Sbjct: 409 AKELARPGDVVLL 421


>gi|294056592|ref|YP_003550250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615925|gb|ADE56080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 457

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 10/123 (8%)

Query: 13  ELINQLSIFPMQWRERK-INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAI 71
           +L +  +   +   E + I     D+R +Q+G  F+A+     DGH F+ QA+A      
Sbjct: 8   QLADWTNGHWLGAHEPEAIRAFCFDTRQLQSGDCFIALTAGARDGHDFVEQALA------ 61

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
              +       S  +    P LVV++T   +    + +       ++ VTG+ GK+S   
Sbjct: 62  ---AGAGSALVSRPLDLPIPQLVVEDTLLAMEAIGAAVRAAFSGPVVGVTGSCGKTSTKE 118

Query: 132 FVQ 134
            ++
Sbjct: 119 MLR 121


>gi|182414445|ref|YP_001819511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
 gi|177841659|gb|ACB75911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
          Length = 472

 Score = 68.4 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 73/451 (16%), Positives = 139/451 (30%), Gaps = 43/451 (9%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
            + DSR ++ G +FVAI   + DGH            A   + A +    +       P 
Sbjct: 28  FAIDSRQLRRGDVFVAIKSEQRDGHA--------FLGAAEAAGASAALVSTPDPALALPQ 79

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           LVV +  +     A          ++ ++G++GK+S  + +  + + +  SS        
Sbjct: 80  LVVADPLRAFQAIAREHRRLFRGPVVGISGSAGKTSTKNLLALLLETAAASSDAHAGQVL 139

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +    +N L  P  + L       +      V    S+ G      + I+      T +
Sbjct: 140 ATEGNLNNHLGVPLTLTLL----DPAVHRFAVVEAGISAPGEMAPLAEMIQPDVALITLV 195

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
              H +           K  L   + P            ++                V  
Sbjct: 196 AAAHTEELGGLAGVAKEKAVLPAAVPPTGIAIFPKHCTEFAAFRELDVQQMVVERADVIR 255

Query: 273 QGKFIHLKKVCAIHNKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
             +    K    + ++ + T+            F      +    NA +A    + +G+ 
Sbjct: 256 PAQPPRDKVFFTVSHRDEHTVVALAYGPPPPLTFTLRRVSDGMAQNAALAICAALWLGVP 315

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVV 387
           +  + + L +      R E    N  G  +Y+D Y     S+   L+    +       +
Sbjct: 316 AESIQQRLAQWQPAKLRGELRREN--GRWLYLDCYNANPASMTDALEAFYGMAPTAEPRL 373

Query: 388 FGCGGDRDQGK-----RPIMGKIALDLA-DIAIV-----------------TDDNPR-SE 423
           F  GG  + G+        +G+     A D A+V                   D  R +E
Sbjct: 374 FVLGGMEELGREAAGYHHELGRALRLRAGDQAVVIGEHAPAVRAGALAAGTAPDQVRVAE 433

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             E I  ++         KG+R  A+   + 
Sbjct: 434 SLEPIAVQVAAWRGAVFVKGSRRYALEKVLA 464


>gi|227363071|ref|ZP_03847207.1| possible tetrahydrofolate synthase [Lactobacillus reuteri MM2-3]
 gi|227071892|gb|EEI10179.1| possible tetrahydrofolate synthase [Lactobacillus reuteri MM2-3]
          Length = 405

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 123/393 (31%), Gaps = 30/393 (7%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI------ 147
            V   R+ L+   +         I+ + GT+GK S  + ++Q  Q +G            
Sbjct: 8   RVKFLRRILTRLGN---PDQRFKIIHIAGTNGKGSTGTMLEQGLQNAGYRVGYFSSPALV 64

Query: 148 ----------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                        S         ++T   P  L      +       +    +   +D  
Sbjct: 65  DDREQIKVNDHLISKKDFAMTYQKITEHLPADLLPDDITIFEWWTLIMLQYFADQKVDWA 124

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            ++         TN+         T  A  + ++         ++ A I         + 
Sbjct: 125 VIECGLGGQDDATNIISAPFISVITHIALDHTRILGPTIAKIAQAKAGIIKTGTKQVFLA 184

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316
                    ++    Q + + L +  A         + V  K +   F L G FQ  N  
Sbjct: 185 PHQEKDALTIIREKAQQQKVGLTQADAQSIVDGKAILKVNHKIYKVPFNLLGTFQSENLG 244

Query: 317 VAAG-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                             + L            +   +    I +D AH  ++ + + K 
Sbjct: 245 TVVSVFNFLYQRRLVTSWQPLLSTLATVKIAGRMQKIADHPPIILDGAHNPDAAKQLTKT 304

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNP-RSEDPEKIRAEII 433
           I  +   ++I+V G   D++      M KI   +AD  I+T  D+P R+ D     + + 
Sbjct: 305 ISKLPHNKVIMVLGFLADKNIS---QMVKIYQQMADEIIITTPDHPTRALD----ASALK 357

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +P  I   N  + +  A ++    D+++V G
Sbjct: 358 SVLPQAIIANNPRQGLVVAKKIAEPNDLIIVTG 390


>gi|182677686|ref|YP_001831832.1| UDP-N-acetylmuramate--L-alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|229486470|sp|B2IGG1|MURC_BEII9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182633569|gb|ACB94343.1| UDP-N-acetylmuramate--alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 476

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 79/425 (18%), Positives = 137/425 (32%), Gaps = 58/425 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A    +          + VV   R+   L+           +  +AV GT G
Sbjct: 67  AAVVVVSTAIKRDNPELVHARELRLPVV---RRAEMLAELMRL------KQCVAVAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +          I     I+++  + RL     + +    S          
Sbjct: 118 KTTTTSLVATLLDAGKFDPTVI-NGGIINAYGTNARLGAGDWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+ +T  A   A  R F E +P    A+
Sbjct: 168 -----------GTFLKLPADIAIVTNIDPEHLDHFKTFDAIKQA-FRAFIENIPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-- 303
           +  D    +E++    +          Q     +         +   +  + K       
Sbjct: 216 MCLDHPVVQELVGTIEDRRIITYGENPQADMRLVDVNLDGGMSRFNVVVRDRKAGQGKRF 275

Query: 304 ---------FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     P+PG     NA  A  + + +G+    +   L     V  RF   G    
Sbjct: 276 EERRVEDLLMPMPGLHNALNATAALSVALQLGMSDDAIRSALRGFGGVKRRFTRTG-EWN 334

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
           G +I+ DY H    +  +L+  R  T G++I V      R      +  + A     AD+
Sbjct: 335 GAQIFDDYGHHPVEIAAVLRAARASTKGQVIAVV--QPHRYTRLHSLFNEFASCFNDADV 392

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--------IEMLNKQDVLVV 464
            IV D     E P    A+  H +      G+R   +  A          + +  D +V 
Sbjct: 393 VIVADVYAAGEPPID-GADKEHLMRALKAFGHRQAMVLRAPEDLPALIRSLAHPGDYVVC 451

Query: 465 AGKGH 469
            G G+
Sbjct: 452 LGAGN 456


>gi|225849381|ref|YP_002729545.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644549|gb|ACN99599.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 454

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 130/404 (32%), Gaps = 51/404 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                +         P +     R + L+      YG      +A+ G+ GK++  S V 
Sbjct: 76  KPDNPELKKARELGIPTI----PRGEMLAELMRFKYG------IAIAGSHGKTTTTSMVG 125

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            +  ++G     +     + ++  + +L     +      S  S                
Sbjct: 126 TVLGKTGFDPTVV-IGGKLEAYGSNAKLGRGEFLVAESDESDGSFLK------------- 171

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +     S  N+  +H+ +++  +   NA    F   +P     +   DD   K
Sbjct: 172 -------LTPTIVSINNIDLEHLGFYKDLEDIKNA-FVEFANKVPFYGFVVANIDDENVK 223

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            ++ R      +           +  K+     K ++    +  +     P      VYN
Sbjct: 224 SIIPRIERKIIKFGLSKDADIRGYDLKLVNGRYKFKI---NDFGEIHLSVPGI--HNVYN 278

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL    +C  +G+   ++ E LE       RFE     S G  +  DYAH    ++  L 
Sbjct: 279 ALATISICNELGVPFCVIKESLENFKNAKRRFEIK--YSDGILVIDDYAHHPTEIKATLS 336

Query: 375 NIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------ 425
             R +    RII VF     R      +  +        DI I+TD     E+P      
Sbjct: 337 AARDMYGQNRIISVF--QPHRYSRVYSLFDEFVESFDIPDIVIITDIYSAGENPIEGVSG 394

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + +  +I           +  EA      ++   DV++  G G+
Sbjct: 395 QLLADKIRQRRNNVFYVKDVNEAESLLKSIIKNGDVVLTMGAGN 438


>gi|6634667|emb|CAB64532.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELINQLSIFP--MQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+   +        + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQAVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI  A   GA   +  
Sbjct: 54 FIETAFENGAAVTLSE 69


>gi|82703368|ref|YP_412934.1| cyanophycin synthetase [Nitrosospira multiformis ATCC 25196]
 gi|82411433|gb|ABB75542.1| Cyanophycin synthetase [Nitrosospira multiformis ATCC 25196]
          Length = 856

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 126/389 (32%), Gaps = 31/389 (7%)

Query: 103 SLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           ++ A+         I  +AVTGT+GK++    +  I    GL     G TST   + +  
Sbjct: 455 AIIANMFKKGDDARIPVVAVTGTNGKTTTVRMIANILDCQGLRV---GMTSTDGVYIEGQ 511

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--- 217
           R+ T        A   L    V    +E +  GL +  L   +      TN+G       
Sbjct: 512 RIDTGDCSGPKSARKVLLHPDVDAAVLETARGGLLREGLAFDRCDVAVVTNIGVGDHLGL 571

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
            Y  T +     K  + + + P    A++ A D +   +            +       I
Sbjct: 572 SYINTVEDLTAVKRIIVQNVKPGTGVAVLNAADPFVAGMAA-HCPGKVTFFARDPDNPVI 630

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA------- 330
              +            ++   + +F + LP          A    I   + +        
Sbjct: 631 AKHRAQRKRVVYVEDDAIVAAEGNFEYRLPFAGIPVTQNGAIAFQIENAMAAIAAGWAVG 690

Query: 331 -LVLEHLEKLHVVPGRFE-----FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
                    L       +     F     RG  +  DY H  +++  ++  I  I + R 
Sbjct: 691 LDWQIIRGGLANFVSDMQTAPGRFNFFTHRGATLIADYGHNVDAIRALVSAIDKIPAKRR 750

Query: 385 IVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEK 442
            VV    GD RD+  R    +I  D  D  ++  D   R     ++ + +  G+      
Sbjct: 751 SVVISGAGDRRDEDIRRQ-TEILGDAFDEVVLYQDQCQRGRADGEVLSLLRQGLEKAKRT 809

Query: 443 GNRIE------AIRTAIEMLNKQDVLVVA 465
            N  E      AI  A + L + ++ ++ 
Sbjct: 810 RNVKEIYGEFGAIDAAFDNLKEGELCLIL 838


>gi|62900690|sp|Q83GN2|MURD_TROWT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 480

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 134/429 (31%), Gaps = 63/429 (14%)

Query: 62  QAIAQGAEAI------VVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF---ASRLY 110
            AI  GA  +      +          S  I  + P++     R+   LS          
Sbjct: 58  DAI--GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRD 115

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
             +    + +TGT+GK++ A     +  + G      G   T                  
Sbjct: 116 KVNTCPWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGTP----------------- 158

Query: 171 AKALSYLSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               +  + +G  ++ VE SS  L     H    +K  + +  NL  DH+++H  ++ Y+
Sbjct: 159 -VLDAVRNPKGFDYLVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYY 217

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--------HL 279
            AK R++              D+   K V +       R +  G     +         L
Sbjct: 218 CAKSRVYHGTTGFC--VYNLDDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGIL 275

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                +  ++   + +   +      L     + + L A  L  ++  +   +   L++ 
Sbjct: 276 CDRAFLSARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDEF 335

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            + P R E V        +    A   +++   L N       R+I++FG    +     
Sbjct: 336 CLSPHRTEVVAKEMGVMWVNDSKATNPHAVIASLSNFS-----RVILIFGGLM-KGVDVS 389

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEM 455
            I  +    +    +V   N      +     I       +   +      EA+  A  +
Sbjct: 390 GIFDRFYETI-KAVVVIGKN------QSFVGNIK--CKKIVCIPDSNDPMSEAVAAADLL 440

Query: 456 LNKQDVLVV 464
               D +++
Sbjct: 441 ATPGDTVLL 449


>gi|227499420|ref|ZP_03929531.1| possible tetrahydrofolate synthase [Anaerococcus tetradius ATCC
           35098]
 gi|227218482|gb|EEI83725.1| possible tetrahydrofolate synthase [Anaerococcus tetradius ATCC
           35098]
          Length = 428

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 5/162 (3%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G  QVYNA  A      I  +  L  + + K          +   S+  RI +D +H  
Sbjct: 255 TGIHQVYNAATALLCLDHIKDEYNLTKDDIYKGIFRADNPGRLQMISKKPRILLDGSHNK 314

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSED 424
            +++ ++K++   T  R+IV F    D+D    P + +    +A   I+T  +DNPR+ D
Sbjct: 315 EAIDALIKSLENYTYDRLIVGFSILKDKDY---PYIIEKLSKVAGKIILTQIEDNPRAFD 371

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + +   +        +  + IEA   + ++ + +D+++  G
Sbjct: 372 LDDLYEIVKEKFDDVEKIKDPIEAYNFSKKIASDKDLVIWCG 413


>gi|148544501|ref|YP_001271871.1| FolC bifunctional protein [Lactobacillus reuteri DSM 20016]
 gi|184153865|ref|YP_001842206.1| folylpolyglutamate synthase [Lactobacillus reuteri JCM 1112]
 gi|325682822|ref|ZP_08162338.1| tetrahydrofolate synthase [Lactobacillus reuteri MM4-1A]
 gi|148531535|gb|ABQ83534.1| FolC bifunctional protein [Lactobacillus reuteri DSM 20016]
 gi|183225209|dbj|BAG25726.1| folylpolyglutamate synthase [Lactobacillus reuteri JCM 1112]
 gi|324977172|gb|EGC14123.1| tetrahydrofolate synthase [Lactobacillus reuteri MM4-1A]
          Length = 419

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 123/393 (31%), Gaps = 30/393 (7%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI------ 147
            V   R+ L+   +         I+ + GT+GK S  + ++Q  Q +G            
Sbjct: 22  RVKFLRRILTRLGN---PDQRFKIIHIAGTNGKGSTGTMLEQGLQNAGYRVGYFSSPALV 78

Query: 148 ----------GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                        S         ++T   P  L      +       +    +   +D  
Sbjct: 79  DDREQIKVNDHLISKKDFAMTYQKITEHLPADLLPDDITIFEWWTLIMLQYFADQKVDWA 138

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            ++         TN+         T  A  + ++         ++ A I         + 
Sbjct: 139 VIECGLGGQDDATNIISAPFISVITHIALDHTRILGPTIAKIAQAKAGIIKTGTKQVFLA 198

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQVYNAL 316
                    ++    Q + + L +  A         + V  K +   F L G FQ  N  
Sbjct: 199 PHQEKDALTIIREKAQQQKVGLTQADAQSIVDGKAILKVNHKIYKVPFNLLGTFQSENLG 258

Query: 317 VAAG-LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                             + L            +   +    I +D AH  ++ + + K 
Sbjct: 259 TVVSVFNFLYQRRLVTSWQPLLSTLATVKIAGRMQKIADHPPIILDGAHNPDAAKQLTKT 318

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNP-RSEDPEKIRAEII 433
           I  +   ++I+V G   D++      M KI   +AD  I+T  D+P R+ D     + + 
Sbjct: 319 ISKLPHNKVIMVLGFLADKNIS---QMVKIYQQMADEIIITTPDHPTRALD----ASALK 371

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +P  I   N  + +  A ++    D+++V G
Sbjct: 372 SVLPQAIIANNPRQGLVVAKKIAEPNDLIIVTG 404


>gi|289522905|ref|ZP_06439759.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503929|gb|EFD25093.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 485

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 98/304 (32%), Gaps = 16/304 (5%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H     S         +         TN+  DH++++ T Q+  +A    F      +  
Sbjct: 167 HGDYMVSELDESDGSFELFSCYIPVVTNIDWDHVNFYPTFQSVQDA-FVRFLSKRKDDGK 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            II  +D   + V  +                                 +    +  +  
Sbjct: 226 IIICGEDTGCQSVAGKFAPQCITYGWGMQWDWGAVGVNHSVGGGVSFTVVKRGAEIGEIN 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  V NAL A  +C  +GI    +   L K      R + +G        Y DY 
Sbjct: 286 LRVSGEHNVLNALAACAVCDLLGISFNTIRHALHKFKGTKRRLQCLGV-CDDIYFYDDYG 344

Query: 364 HTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           H    ++  L  +R    S R++V+F      R +       +  +  AD+  +    P 
Sbjct: 345 HHPREVQATLDTLRNIFPSRRLVVIFQPHRYSRTKAMYRKFAEALMK-ADLVYILPVYPA 403

Query: 422 SEDPE-KIRAEIIH-------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            E  E  I +++I        G    +   +  E +    E +   D+L+  G G   V+
Sbjct: 404 DEKLELSISSDLIVDSLTSECGHKNCLSLSD-DEVVSKVAENILPGDILLTLGAG--NVN 460

Query: 474 IVTN 477
           I  N
Sbjct: 461 IYGN 464


>gi|254449007|ref|ZP_05062461.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
 gi|198261401|gb|EDY85692.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
          Length = 468

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 87/451 (19%), Positives = 150/451 (33%), Gaps = 58/451 (12%)

Query: 34  SSDSRHIQ-AGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP 91
           S+++R ++ AG  IF+        GH      I    + IVVS+A    +          
Sbjct: 39  SANTRRLESAGARIFI--------GHS--AAHIEN-VDVIVVSTAVGEDNPEVVAAREAR 87

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPT 150
           I VV    + L+       G      +AV GT GK++  S    +    G   +F IG  
Sbjct: 88  IPVVPRA-EMLAELMRFRQG------IAVAGTHGKTTTTSLTASLLAEGGLDPTFVIG-- 138

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             ++S   + RL +   +      S  S                       ++ +    T
Sbjct: 139 GKLNSAGTNARLGSGDYLVAEADESDASFLI--------------------LQPVMSVVT 178

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+  +             F   LP    A++  DD   +E++ R           
Sbjct: 179 NIEPDHLATYGGSFEKLKDTFVEFLHHLPFYGLAVMCVDDPVVREILPRVTCQTLTYGIQ 238

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                     +     +   V +    +       +PGE  V NAL A  +   +G+   
Sbjct: 239 EGADIQAINLRFEGATSVFDVALPNGKRLDGITLNMPGEHNVQNALAALAIAHELGVSGD 298

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +   L+    +  RF+ +G    G     +  DY H  + +   L+  R     R +VV
Sbjct: 299 SISSALQSFGGIGRRFQLLGDIQCGNGSVTLVDDYGHHPSEMSATLRAARNAWPDRRLVV 358

Query: 388 FGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIH-GIPG 438
                   R Q        +    AD   +T+     E      D   + A +   G   
Sbjct: 359 AFQPHRYSRTQDLFEDFASVLSA-ADALCLTEVYAAGEPAVPGADGRSLAAAVRARGQVN 417

Query: 439 FIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            +   +  EA+   ++ +L + DVL+  G G
Sbjct: 418 PVFVESV-EALPEVLQGVLEEGDVLLTLGAG 447


>gi|169335453|ref|ZP_02862646.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258191|gb|EDS72157.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
          Length = 466

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 129/406 (31%), Gaps = 39/406 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV S+A    +       N  IL ++ +  FL L +        +  +AV+GT GK++ 
Sbjct: 71  LIVYSAAIRENNPERVEGKNKGILELERSV-FLGLISRYY-----KRTIAVSGTHGKTTT 124

Query: 130 ASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +S +  +        S  IG T    +       +    I   + +           +++
Sbjct: 125 SSLMSLVFLNADLDPSISIGGTLKKINGNSRVGDSDYFVIEACEFVDSFLHSRHFVGTIQ 184

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                 N+ +DH+DY            R F E+ PK+   ++  
Sbjct: 185 ----------------------NIEKDHLDYFTGGIEQIKESFRKFAEITPKDGMLVVNG 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD    +++        +                    N              F   +PG
Sbjct: 223 DDENVLDILDGLECKIVKAGLSDSNDFVAKNITYDKFGNPNFDVYKGGEFYHKFELNIPG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  V NAL    +     ID  ++ +  ++      RFE  G       +  DYAH    
Sbjct: 283 EHNVLNALSVVAVSDFFMIDKEVINDSFKEFTGAKRRFEKRG-IVNDITVIEDYAHHPTE 341

Query: 369 LEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED--- 424
           L++ +   +     ++ V+F      R         + A+  AD  I+ D     ED   
Sbjct: 342 LKVTIDACKNYEHNKLFVIFQPHTYSRTFLLFDEFVE-AMKGADELILNDIYSDREDNEW 400

Query: 425 ---PEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAG 466
               E I  ++I          +    IR   +      D ++VAG
Sbjct: 401 NIYSEDIANKVIEKYNIPSRVISEFSDIRDYVVNNAKPGDFVLVAG 446


>gi|83721549|ref|YP_441667.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|167618582|ref|ZP_02387213.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           Bt4]
 gi|257137836|ref|ZP_05586098.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|109892697|sp|Q2SZI2|MURC_BURTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83655374|gb|ABC39437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia thailandensis
           E264]
          Length = 465

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 141/429 (32%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVP--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R          +  + V A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCIDDPNVRQIVPLISKPVVRYGF--AADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG++    +  LPG   V NAL A  +   + +    + + L + + V  RF+  G  
Sbjct: 261 LREGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEM 320

Query: 353 SRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                    +  DY H    +   +   R    GR  +V      R    R         
Sbjct: 321 PAAGGGAYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNV 379

Query: 409 LA--DIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           L+  D  ++T+     E P      + +   +   G    +      E      ++    
Sbjct: 380 LSTVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|84516388|ref|ZP_01003747.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
 gi|84509424|gb|EAQ05882.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
          Length = 471

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 134/414 (32%), Gaps = 43/414 (10%)

Query: 66  QGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GAE +V+SSA      +  A   +  P++   +    L            ++ +AV GT
Sbjct: 75  AGAEVVVISSAIKPGNPELDAARATGLPVVRRADMLAELMRL---------KSNVAVAGT 125

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  +    G+    I     I ++  + R+                     
Sbjct: 126 HGKTTTTTMVAALLDEGGIDPTVI-NGGIIHAYGSNARMGQGE----------------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA       +RL          TN+  +H+++  T +         F   +P    
Sbjct: 168 WMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGTIENLRK-GFYDFVSNIPFYGL 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFD 301
           A+   D    + ++ R  +          Q     +         +      S +     
Sbjct: 224 AVCCTDHPEVQALVGRITDRRVVTFGFNAQADVRAINLTYKAGVAHFDIALQSEDQVIAG 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              P+PG+  V NAL A  +   +G+    +   L     V  RF  V     G  I  D
Sbjct: 284 CSLPMPGDHNVSNALAAVAVARHLGLKKDEIRAALAGFGGVNRRFTKVA-EVNGVTIIDD 342

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           Y H    +  +L+  R  T+GR+I V                    + AD+  +++    
Sbjct: 343 YGHHPVEIAAVLRAARQATTGRVIAVHQPHRFSRLSHHFDEFCACFNDADVVGISEVYAA 402

Query: 422 SEDPEKIRAE-------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            EDP    +        I HG        +  +  R   E     D++V  G G
Sbjct: 403 GEDPIAGASHADLVAGLIRHGHRHARIVNSEDDLERLVREQAKPGDMVVCLGAG 456


>gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
          Length = 457

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 135/402 (33%), Gaps = 52/402 (12%)

Query: 68  AEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ IVVSS  S Q            P++               +       ++ VTG++G
Sbjct: 72  ADCIVVSSGISPQASVVKKAQGRGIPVI---------GEI-DFVAPHIKGKVIGVTGSNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+    +  + ++ G  +   G                  P+ L       +SQ +  +
Sbjct: 122 KSTTTMLIGHLLKKYGYKTAVAGNIGN--------------PLSLH------ASQNLDFI 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L    L  +K      TNL  DHID+H +   Y  AK RL     P     +
Sbjct: 162 VIELSSFQLYWAHL--LKSHVAIVTNLAPDHIDWHGSFTNYLKAKARLVRLQEPGHWAVV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D         +               + +H         +Q+  +S   K+  F + 
Sbjct: 220 QNRDVD-----ALQLSGKSAVASLYWEGQEPVHKTDAYICMGEQEAWLSYNKKELLFDYR 274

Query: 306 L---PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                G   + N  + A   I  G+  + + + L     +P R  FV   +    I    
Sbjct: 275 DVDLIGRHNLENLAMTASALILGGVPCSNLTKQLSDFIPLPHRCTFVAEINGVRYIDDSK 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
                 +      + +I   +++++ G G   D      + +     A +AIV      +
Sbjct: 335 GTN---VAASATALTSIHGPKVVILGGQGKGEDYS---PLAEAVKKEARVAIV----LGA 384

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E    + A    G    IE  +  +A++ A+ +    + +++
Sbjct: 385 EKKPIVTALEGAGFARHIEVDSMEDAVKAAMALSLPGETVLL 426


>gi|196230906|ref|ZP_03129767.1| UDP-N-acetylmuramate/alanine ligase [Chthoniobacter flavus
           Ellin428]
 gi|196225247|gb|EDY19756.1| UDP-N-acetylmuramate/alanine ligase [Chthoniobacter flavus
           Ellin428]
          Length = 766

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 14/230 (6%)

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           + G       +   +                +            +PG   V N++ A  L
Sbjct: 237 HPGAISYGESHTAFYRFDDVHTKDFQSHFRVLRGGEPLGAITLNVPGRHNVSNSVGAIAL 296

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+  A + E LE       RFE     S    +  DY H  + ++  L   +    
Sbjct: 297 ATELGVPFAKIAEALESFRGARRRFEI-KYRSDRYMVVDDYGHHPSEVKATLATAKNTGR 355

Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII- 433
            R++ +F      R    +   G+ A   AD+A++ D  P SE P      + I  E++ 
Sbjct: 356 KRVLCMFQPHRYSRTLKLKAEFGR-AFHHADVAVIADVYPASELPIDGVSGQTIVDEMLR 414

Query: 434 HGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG--HETVHIVTNGEK 480
            G      + +R + I   I       DV++  G G  HE   I+    K
Sbjct: 415 EGHEAASFQPDRKK-IALEIGRALEPGDVVISLGAGNIHEAGSILARDIK 463


>gi|6634640|emb|CAB64514.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
 gi|6634652|emb|CAB64522.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQVVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI  A   GA   +  
Sbjct: 54 FIETAFENGAAVTLSD 69


>gi|6634649|emb|CAB64520.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQAVGAKNDVSIFEDIQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI  A   GA   +  
Sbjct: 54 FIETAFENGAAVTLSD 69


>gi|326202902|ref|ZP_08192769.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986979|gb|EGD47808.1| cyanophycin synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 893

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 14/176 (7%)

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           D    F    +  + N+L A    I + I    +++ +          PGRF      + 
Sbjct: 674 DIPITFGGIVDCNIENSLAAISALIGLNIPLDAIVKGMNTFQPDMELNPGRFNIFDMGTF 733

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DY+H       ++K ++ I + R++ + G  GDR       +G++  +      
Sbjct: 734 K--VMIDYSHNIAGYSAVVKFMQRIKAKRLVGIIGMPGDRQDSNLKEVGELCANSFHKIY 791

Query: 415 VTDD----NPRSEDPEKIRAE--IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVL 462
           + +D      R  +   I  +  I  G             EA+  A+      D++
Sbjct: 792 IKEDIDLRGRRRGEVADIFEQSIISAGAKKENVEIIYRETEALEKAMLDAQPGDLI 847


>gi|189423738|ref|YP_001950915.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter lovleyi SZ]
 gi|229620044|sp|B3E3Y1|MURC_GEOLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189419997|gb|ACD94395.1| UDP-N-acetylmuramate/alanine ligase [Geobacter lovleyi SZ]
          Length = 456

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 135/425 (31%), Gaps = 50/425 (11%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGKHP 114
           I  A       + +V S+A    +       +   P++     R   L+      YG   
Sbjct: 55  IGHAAENLTNVDVVVTSTAVQSDNPEVIEAKHRMVPVI----PRAEMLAELMRMKYG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +   +G+    +     +++   + +L            
Sbjct: 108 ---IAIAGTHGKTTTTSMVATVLTHAGIDPTIV-IGGKLNTLGSNAKLGQG--------- 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          +           +       TN+  DH+DY+             F
Sbjct: 155 -----------KFLVAEADESDGSFLTLSPTIAVVTNIDADHLDYYTGGLEQIKDTFVSF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A++  +D    E++ R       +         +    V     +   T  
Sbjct: 204 INKVPFYGLAVLCQEDRNINEIIPRIK--KRFMTYGLSSQADLRATHVKLDGFQTTFTAH 261

Query: 295 VE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +  +  +  F +PG   V NAL    + + + +    + E   +   V  RF   G   
Sbjct: 262 YKGYRLGEISFNMPGAHNVLNALACTAVALELDVPFDKIQEGFAQFGGVGRRFTVKG-EK 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
            G  +  DY H    +   L   R     R +VV        + K  +  +       AD
Sbjct: 321 NGIMVVDDYGHHPAEIRATLGAARNGWPERRLVVAFQPHRYSRTK-ELFNEFVTCFYDAD 379

Query: 412 IAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++TD    SE P      E++  E   HG        +R +       ++ + D+++ 
Sbjct: 380 VLVLTDIYAASEQPIPGVSAERLAEETRRHGQRDVTYIADRNDLPDYLAGIVKEGDIVIT 439

Query: 465 AGKGH 469
            G G+
Sbjct: 440 LGAGN 444


>gi|6634643|emb|CAB64516.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQVVGAKNDVSIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA   +  
Sbjct: 54 FIERAFENGAAVTLSD 69


>gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
          Length = 445

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A++ G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +     + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNHRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKDKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGTLKQGDEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|317050839|ref|YP_004111955.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5]
 gi|316945923|gb|ADU65399.1| UDP-N-acetylmuramate/alanine ligase [Desulfurispirillum indicum S5]
          Length = 453

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 141/414 (34%), Gaps = 48/414 (11%)

Query: 68  AEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V SSA S ++       R   P++   +  + L+      +G      + + G  G
Sbjct: 65  AHVVVTSSAVSKENPEVAEARRKRIPVI---SRAEMLAELMRMKHG------VLIAGAHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +   +GL    +     ++    + +L     I      S          
Sbjct: 116 KTTTTSLVATVLTDAGLDPTVV-IGGRLNKIKSNAKLGQGDLIVAEADESD--------- 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+ ++H+D++ + +   N     F    P    + 
Sbjct: 166 -----------GSFMHLPPVLSVVTNIDKEHMDHYGSMENLKNT-FLKFINKTPFFGVSF 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           +  DD + ++++ R   +            F     +   +  Q+  ++  G++  +F  
Sbjct: 214 VCLDDEHIQDILPRIERSHVTYGLNTNADIF--AHHIRRTNGCQRFDVNYNGRELGEFRL 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V N+L   G+ +   +    +   LE    V  RFE  G    G  +  DY H
Sbjct: 272 CLPGVHNVVNSLPVIGIALEFEVPVDTIRHSLEHFAGVHRRFEITGH-MNGFAVVDDYGH 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               +  +LK  R   SG++I +F     R    R +          AD  IV D  P  
Sbjct: 331 HPTEIMAVLKAAREWYSGKVIAIF--QPHRYSRVRELYEDFTKSFYDADEVIVADIYPAG 388

Query: 423 EDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      +KI  EI   G           E +        +   ++  G G+
Sbjct: 389 EAPIPGLNSQKIAQEIKARGHKQVTHMAGFDEIVAYLKAQHCEDGAIITLGAGN 442


>gi|288574852|ref|ZP_06393209.1| UDP-N-acetylmuramate/alanine ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570593|gb|EFC92150.1| UDP-N-acetylmuramate/alanine ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 482

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 85/278 (30%), Gaps = 14/278 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+  DH++++    +  N      + L       +   D      +     +
Sbjct: 180 HPTISVITNVDWDHVNHYPDFDSVLNTFESFSKNLRKGGLSVLCGEDGGVQSLLKMMEKD 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                ++ G+  ++         ++   V+ SV                 +N L A   C
Sbjct: 240 GPKAKVTYGWGDRWDWGATDIEYNHGGGVSFSVRKHGRSIGRIELSVSGDHNVLNALASC 299

Query: 323 IAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           I          ++   L +      R +F G       +Y DY H    +E  LK I  I
Sbjct: 300 IVADTLSVPFDVIKRTLRQFKGAKRRLQFKG-GVEHIDVYDDYGHHPKEVEATLKAISQI 358

Query: 380 TSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAE 431
              R I+V        R         ++    AD  +V    P  E P        I   
Sbjct: 359 FPERKILVAFQPHRFTRTAAMAEDFAEVLT-YADKVVVLPIYPADEPPIDGVTSHMIGDH 417

Query: 432 IIHGIPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAGKG 468
           +           +R + AI   + ++ + DV++  G G
Sbjct: 418 LSMKKHPSFFVADRKKDAIDKVMSLVEEGDVILTLGAG 455


>gi|255527337|ref|ZP_05394215.1| FolC bifunctional protein [Clostridium carboxidivorans P7]
 gi|296184932|ref|ZP_06853343.1| bifunctional protein FolC [Clostridium carboxidivorans P7]
 gi|255508984|gb|EET85346.1| FolC bifunctional protein [Clostridium carboxidivorans P7]
 gi|296050714|gb|EFG90137.1| bifunctional protein FolC [Clostridium carboxidivorans P7]
          Length = 447

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 140/414 (33%), Gaps = 54/414 (13%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           T K L L  +          + V GT+GK SV + + +I   SG                
Sbjct: 25  TEKILELLGN---PHKKIKYIHVAGTNGKGSVTTMISKILIESGFKVGMYTSPYLEDFEE 81

Query: 158 QDNRLTT-------------------------------PSPIYLAKALSYLSSQGVTHVS 186
           +     T                                  I  A    +   +    V 
Sbjct: 82  RIQINGTNISKDALSSVVTEVSKAVDKVIELGYDHPTEFEIITCAMFYYFCKEKVDFGVI 141

Query: 187 -------VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELL 238
                  +++++     +   G  ++A    ++ RDH++    T +     K  + +  +
Sbjct: 142 EVGLGGRLDSTNVVQPYNSQLGGGVLANVIVSISRDHMNILGDTLEKIAYEKAGIIKNGV 201

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P        + +   +EV K   +   +V     +          +    Q++ +     
Sbjct: 202 PVIMYPQEKSVEEVIEEVCKEKGSNLIKVPFNCVEYVESEKISNNSNKYVQKLIVRTSSN 261

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSR 354
            ++    L G+ Q+ N   A      I           + +  K     GR E +     
Sbjct: 262 IYNIELSLLGKHQMVNCATAIFAIEEIIKKGFRIELNNILNALKNVKWIGRLEVMKNKPL 321

Query: 355 GGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
              + +D AH  + +  + +NI +  +  ++I++ G   D++  K   M      +A+  
Sbjct: 322 ---VVIDGAHNIDGITKLKENIEKYFSYRKMILILGILADKEVEK---MVSTIAPMAEKI 375

Query: 414 I-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I VT D+ R+E+  ++   I         K N  EA +TA+  L ++D+L+++G
Sbjct: 376 IAVTPDSYRAENAHELEKIIKKCNANCESKDNYEEAYKTALSYLGEEDILIISG 429


>gi|228941001|ref|ZP_04103559.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973932|ref|ZP_04134507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980521|ref|ZP_04140831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228779341|gb|EEM27598.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228785798|gb|EEM33802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818680|gb|EEM64747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326941682|gb|AEA17578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 450

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISKAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +            +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSADTKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITIVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A     + DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEGDVVLL 422


>gi|85714977|ref|ZP_01045962.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698174|gb|EAQ36046.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 467

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 138/421 (32%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  NGADVLVVSTAIKRDNPELMAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVATLLDA-GDFDPTVINGGIINAYGTNARLGAGDWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A  +A  R F E +P    
Sbjct: 168 -------------GTFLKLPTDIAIVTNVDAEHLDHFKTFDAVQDA-FRSFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  D    + ++ R  +          Q     +             +    K     
Sbjct: 214 AVMCIDHPVVQTMVGRIEDRRIITYGQNPQADVRLVDLAPNGGGSHFKVVFRNRKTDAAH 273

Query: 304 F------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+PG     NA  A  +   +GI  A +   L     V  RF   G   +G  
Sbjct: 274 EIPDLVLPMPGPHNALNATAAIAVAHELGIPDATIRNALAAFGGVKRRFTKTG-EWKGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DY H    +  +LK  R  T+GR++ V      R    + +  +       ADI +V
Sbjct: 333 IIDDYGHHPVEIAAVLKAARESTAGRVVAVV--QPHRYTRLQALFEEFCTCFNDADIVVV 390

Query: 416 TDDNPRSEDPEK-IRAE-----IIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
            +  P  E P   I  +     +       +       A+   I  +    D +V  G G
Sbjct: 391 AEVYPAGETPIAGIDRDHFVLGLRAHGHREVVSLQESAALAGVIASLAKPGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|222109851|ref|YP_002552115.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
 gi|221729295|gb|ACM32115.1| cyanophycin synthetase [Acidovorax ebreus TPSY]
          Length = 861

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 77/236 (32%), Gaps = 13/236 (5%)

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A + +             +            + +++     +  +     ++  ++ 
Sbjct: 605 PHVAAMASVCPGKVIFFAVDRHHPLMATHRAQGNRVVYVDGDSIVAAEGSWRETISLREI 664

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGG 356
                    FQV N + A G    +G+    +   L          PGRF     + RG 
Sbjct: 665 PITRGGTIGFQVENVMAAIGAAWGVGLPWQTIRRGLAGFMNDSDNAPGRFNV--MDYRGA 722

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DY H  +++  +++ ++ + + +  VV    GDR         +I     D  ++ 
Sbjct: 723 TVIADYGHNPDAMRALVQAVQAMPARQRSVVISGAGDRRDQDIVEQTQILGQAFDDVVLY 782

Query: 417 DDNP-RSE---DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D   R     +   +  + + G P      E      AI  A+E L   D+ +V 
Sbjct: 783 QDACQRGRADGEVLALLRQGLQGAPRTRYVTEIHGEFIAIDHALERLQPGDLCLVL 838


>gi|169831592|ref|YP_001717574.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638436|gb|ACA59942.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 455

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 142/413 (34%), Gaps = 46/413 (11%)

Query: 67  GAE-AIVVSSAYSLQDFSATI--RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           GA   +V SSA    +    I  +   P++     R  +      +   H    +AV G 
Sbjct: 63  GAAELVVYSSAIPPDNPELVIARKRGLPVI----PRAEM--LGRLM---HQWKGIAVAGA 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  + +R+GL    I       +   + +      +      S        
Sbjct: 114 HGKTTTTSLVAFLLERTGLDPTVI--IGGEMNGFGNAKAGGGEYLVAEADESD------- 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                  S  L       +       TN+  DH+DY++T  A   A  R F   +P++  
Sbjct: 165 ------GSFSL-------LHPSIVIVTNVEDDHLDYYRTVDAIRRA-FREFIFKVPRDGV 210

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD + +++                    +    +                   F 
Sbjct: 211 AVLNYDDPFLRQMAHELPFPVITYGCAPDADYRLAGFHLN-CAVSSAEVYWRRELLGRFE 269

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   + NAL    +   +G++   +   L     V  RFE VG  SRG R+  DYA
Sbjct: 270 LTIPGRHNLLNALAVVAVGRHLGLEFPEIARALRDFRGVRRRFELVG-ESRGVRVVDDYA 328

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    ++  L+  R     R+I VF      R +      GK A   AD  +++   P  
Sbjct: 329 HHPTEIKATLEAARQTRPKRLIAVFQPHRYTRTKFLHAEFGK-AFTAADQVLLSRIYPAG 387

Query: 423 EDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E P        IR EI        +    + E +     ++ + D+++  G G
Sbjct: 388 EKPIPGVTARLIRDEIQKQQRVEPLLFEEQDELVAHLASVVREGDLVITLGAG 440


>gi|288818598|ref|YP_003432946.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787998|dbj|BAI69745.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752189|gb|ADO45672.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobacter thermophilus
           TK-6]
          Length = 452

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 139/410 (33%), Gaps = 51/410 (12%)

Query: 70  AIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            ++ SSA S  +           P++   +    L            +  +AV G+ GK+
Sbjct: 68  VVIYSSAVSESNPEIVQAKKMGIPVIPRGDMLAELFRL---------KEGIAVCGSHGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +   +G     I     +  F  + RL                        +
Sbjct: 119 TTTSMIAHMVHEAGYDPTVI-IGGVLQKFGSNARLGK--------------------DQL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S           +       TN+ R+H+ Y++      +A    F   +P     ++ 
Sbjct: 158 IISEADESDGSFLKLLPTVAVITNIDREHLGYYKDLDEIKSA-FLRFANSVPFYGFCVMN 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
           ADD  S+EVMK              +   +  + +          +  EGK        +
Sbjct: 217 ADDENSREVMKSVKAPLITFGI--EREAHLMARNLSLEGGCYSFDLFYEGKPLTRIHMSV 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   VYNAL    +C+ +GI  + + + LE       R EF G   +G  +Y DY H  
Sbjct: 275 AGRHNVYNALAGIAVCLRMGISVSNIKKALESFKNAERRLEFKGY-FKGAAVYDDYGHHP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +  ++K +R +   R IV+        R         ++  + AD+ ++TD     E+
Sbjct: 334 TEIRAVIKALREMYLQRRIVLVFQPHRYSRTYYLFKDFVEVLKE-ADVCLLTDIYSAGEE 392

Query: 425 ------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  + +      G   F  K    +AI   ++     DV++  G G
Sbjct: 393 NSYGVSAQDLAKA--AGCAFFENKEELFDAIEKKVKDA---DVILFMGAG 437


>gi|238060680|ref|ZP_04605389.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
 gi|237882491|gb|EEP71319.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
          Length = 484

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 137/459 (29%), Gaps = 69/459 (15%)

Query: 35  SDSRHIQAGWIFVAIV--GNKED-GHL--FIPQAIAQGAEAIV-VSSAYSLQDFSATIRS 88
            DS       I  A+   G +   GH   ++      GA  +V  + A    +  A   +
Sbjct: 47  HDS------DILAALRTAGVRVRVGHDAAYVE-----GASCVVHTTGARHAPEVRAARAA 95

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++        L+             ++AV+G+ GKS+ A          G+    + 
Sbjct: 96  GIPVVRRAQVLDKLAD---------GRRLVAVSGSHGKSTTA----------GMLVHILR 136

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
                 ++     LT P                +    +  +           +      
Sbjct: 137 TLGQDPTYLIGADLTGPGS-----------GAHLGRSRLLVAEADESYRSFHLLSPSLAV 185

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRAHNAGCRV 267
            TN+  DH  +                               A    +V+         +
Sbjct: 186 VTNVTDDHPSFVSRADVLRAYVEFGCRVAPDGFLIVNADCVGATVAAQVIADERPDLMVL 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                +   + L  V A       T+ +    +     P P    +++A  A    +A+G
Sbjct: 246 RCGRDRAADVRLLDVHAEGWSVSATVRMPNGTETRLTLPTPATHHLHDAAAAVACAVALG 305

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D A V   +     V  RFE       G  +   YA   N +   L+  RT+  GR+ V
Sbjct: 306 LDPADVTAAVGTFAGVRRRFE-HIDTRAGVTVIDSYASHPNEIAADLQAARTLARGRVFV 364

Query: 387 VFGCGGD-----------RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDP----EKIR 429
           VF   G            R       +G++  D AD  ++ D  DN     P    + I 
Sbjct: 365 VFQPSGHARVLALGERIGRVLALDERIGRVLADNADYVLLLDVPDNLSDGRPLADTDAIA 424

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A +  G   +        A R    M  + DV++  G G
Sbjct: 425 ARLRDGA--YCLPLGPDHAARVIARMAGRGDVVLTMGTG 461


>gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
 gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
          Length = 445

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 142/422 (33%), Gaps = 58/422 (13%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLS- 103
           G   DG +F    +  A+  G         + +   S  I    P +     N  + L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNG---------FDILALSPGISERQPNIEAFKQNGGRVLGD 97

Query: 104 -LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 98  IELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F           +   D      MKRA               +      
Sbjct: 200 LLDYAHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  ++    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +A   A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALAGK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|302877576|ref|YP_003846140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580365|gb|ADL54376.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
          Length = 463

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 147/480 (30%), Gaps = 68/480 (14%)

Query: 1   MK-LQD---LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAG-----------WI 45
           MK L D   LI       ++ +     Q    ++    +DSR    G            +
Sbjct: 1   MKTLSDKSVLILGLGETGLSMVRWLSAQGARLRV----ADSRTTPPGLDQVAQFVPADQL 56

Query: 46  FV-AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           F  A      DG       I      I +S    L D      +   I VV +   F   
Sbjct: 57  FFGAFTDTLFDG-------IE----LIAISPGVPLADPYIARAAARGIPVVGDIELFAQQ 105

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                +   P  +LA+TG++GK++V S V+ +C+ +GL +   G               +
Sbjct: 106 L-RASHAPLPGKVLAITGSNGKTTVTSLVEHLCRAAGLDAVAAGNI-------------S 151

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P+ + +                +E SS  L+  R   +   A +  N+  DH+D +    
Sbjct: 152 PAVLDVVLQRGDK---QPEVWVLELSSFQLETTR--SLTADAATVLNVSEDHLDRYLGMD 206

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y  AK ++      +     +   D      MK   +            +     +   
Sbjct: 207 EYAAAKQQILGGCRLQ-----VLNRDDARSIAMKHTTSDCVSFGLNKPASESDFGIEREG 261

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                    S   K  +             A +   LC AI +   ++L  L     +P 
Sbjct: 262 DDIWLVQGCSRLIKASEMQLAGLHNVANALAAL--ALCRAIDLPMPVLLAALRSFKGLPH 319

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E V                  +    L  +     G   V+   G  ++Q   P+   
Sbjct: 320 RVEKVAVLHGVTFYDDSKGTNVGATVAALAGL-----GCPAVLIAGGVGKEQDFSPL-KS 373

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                A   ++        D   I A +  G    I   +  +A++ A ++    D +++
Sbjct: 374 AVTHHARAVVLI-----GRDAPLIAAALAGGDVPLIHAADMQDAVQLAAKIAQYGDAVLL 428


>gi|94985823|ref|YP_605187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
 gi|94556104|gb|ABF46018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
          Length = 429

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             ++ DSR       FVA+ G +  G+ F+  A+A GA  ++            +     
Sbjct: 22  KRLTWDSREASPEVAFVALPGEQMHGNRFVQAALAAGAPFVLTDLDVPRAVRVPSQAGQG 81

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
                   R+ L  +A     K+P  ++ +TG+ GK++  S+         +  +   P
Sbjct: 82  A-------REALFAWARAERAKNPL-VVGITGSVGKTTAKSYAAAALNAHFMPVYNTMP 132


>gi|294670616|ref|ZP_06735494.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307655|gb|EFE48898.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 469

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 144/424 (33%), Gaps = 56/424 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
           QGA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 63  QGADVVVTSTAVKKDNPEVTAAVAQQIPVI----PRALMLAEMMRFKDG------IAIAG 112

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL   S I      S  S   
Sbjct: 113 THGKTTTTSLTASILAAAGLDPTFVIG--GKLTAAGTNARLGKGSYIVAEADESDASFLY 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  +    TN+  DH+D +       +     F   +P  
Sbjct: 171 --------------------LTPLMAVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ R                 I+   V +I  + + T+       E
Sbjct: 211 GKAFLCIDSEHVRAILPRISKPHATYGL--DDSADIYATDVESIGAQMKFTVHARLKGHE 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            + FD +  LPG   V NAL A G+ +  G+D   V   LE    V  RF+  G      
Sbjct: 269 PRTFDVVLNLPGRHNVLNALAAIGVALECGVDEEAVRRGLEGFAGVGRRFQSYGEIELPQ 328

Query: 357 R----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--A 410
                +  DY H    +   L   R     +  +V      R    R +    +  L   
Sbjct: 329 GGKALVVDDYGHHPVEMAATLSAARGAYPDKR-LVLAFQPHRYTRTRDLFDDFSKVLNTV 387

Query: 411 DIAIVTDDNPRSEDP-----EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D+ ++TD     EDP       +   +   G    +   +  E     +++L   DVL+ 
Sbjct: 388 DVLVLTDVYAAGEDPLPQDSRALARNVRAYGKVDPLYCADVNELPAMLLDVLRDGDVLLN 447

Query: 465 AGKG 468
            G G
Sbjct: 448 MGAG 451


>gi|281412291|ref|YP_003346370.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373394|gb|ADA66956.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotoga
           naphthophila RKU-10]
          Length = 430

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 114/363 (31%), Gaps = 57/363 (15%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
                L    P+ ++ +TGT GKS+  + +  +    G  SF  G   T +         
Sbjct: 91  ELQFFLDNVDPKKVVGITGTDGKSTATALMHHVLSERGFKSFLGGNFGTPAV-------- 142

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               +               +  +E SS  L       +        N+  DH+D+H + 
Sbjct: 143 --EALE----------GEYDYYVLEMSSFQLFWSERPYLSNF--LVLNISEDHLDWHSSF 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y ++K++        +           +K + +  +  G R   + +        +  
Sbjct: 189 EEYVDSKLKPAFLQTEGDLFVY-------NKHIERLRNLEGVRSRKIPFWTGENFATERE 241

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I + ++ T+                    N L  + L + +  +    LE L     +P
Sbjct: 242 LIVHGKKYTLPGNY----------PYQTRENILAVSILYMEMFNELESFLELLRDFKPLP 291

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E++G            A +++++   L N          VV    G   +    +  
Sbjct: 292 HRMEYLGQIDGRHFYNDSKATSTHAVLGALSNFDK-------VVLIMCGIGKKENYSLFV 344

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDV 461
           + A       I            +I  E+   +         N  EA   A+E+  K DV
Sbjct: 345 EKASPKLKHLI---------MFGEISKELAPFVGKIPHSIVENMEEAFEKAMEVSEKGDV 395

Query: 462 LVV 464
           +++
Sbjct: 396 ILL 398


>gi|145588855|ref|YP_001155452.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047261|gb|ABP33888.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 856

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 128/372 (34%), Gaps = 29/372 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++    +  +   +GL     G T T   +     + T        A + L
Sbjct: 473 VAVTGTNGKTTTVRLISHLLTETGLRV---GMTGTDGVYINHRAIDTGDCSGPKSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
               V    +E +  GL +  L   +      TN+G        + T         R+  
Sbjct: 530 MHPDVDAAVLETARGGLLREGLGFDRCEVAVVTNIGEGDHLGLNYITSVEDLAILKRVIV 589

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTI 293
           + +     A++ A D    ++  +            +         K    I+N     +
Sbjct: 590 QNVAPTGAAVLNAADPMVAKMGDKCSGRVIFFAQNQHHPVITAHRAKNKKVIYNDGTYIV 649

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAA---------GLCIAIGIDSALVLEHLEKL----H 340
           + +G    + FP+       N ++           G   A+G+D+  +   L       +
Sbjct: 650 ASKGSRVMYRFPVSEIPLTQNGVLGFQVENAMAAIGAAWALGLDAEKIARGLNSFESTAN 709

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGRF     N  G  +  DY H  +++  +   I  +   +  VV    GDR      
Sbjct: 710 SVPGRFNQFQHN--GATVIADYGHNPDAMRALASAITAMKPKQSHVVISGAGDRRDEDIR 767

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAI 453
            + +I  +  D  I+  D   R  +  ++   +  G+          E      AI TA+
Sbjct: 768 DLTRILGNSFDNIILYQDACQRGREDGEVLKLLQEGLVGATKAKQVKEIHGEFLAIDTAL 827

Query: 454 EMLNKQDVLVVA 465
             ++  D+ ++ 
Sbjct: 828 NDISAGDICLIL 839


>gi|15892254|ref|NP_359968.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia conorii str.
           Malish 7]
 gi|20532173|sp|Q92IT9|MURC_RICCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15619392|gb|AAL02869.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia conorii str.
           Malish 7]
          Length = 485

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 63/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-----PI 401
             V        I  DYAH    ++  L   + I + +   V          +        
Sbjct: 330 TKVA-EYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
           M   A   ADI  +TD     E+P          +KI     H    F+ + +  +A+  
Sbjct: 389 MLCFAD--ADILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELD--DAVGV 444

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I+     D++++ G G+
Sbjct: 445 IIDNAASGDMIIMMGAGN 462


>gi|170755790|ref|YP_001783188.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B1
           str. Okra]
 gi|229486483|sp|B1IH05|MURC_CLOBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169121002|gb|ACA44838.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B1 str.
           Okra]
          Length = 458

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 126/414 (30%), Gaps = 46/414 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A+ IV ++A +  D    I +    + + +   FL            +  +A++GT G
Sbjct: 68  KNADLIVYTAAIAS-DNPEIIEAKEKNIKLMDRADFLGNLMKGY-----KYNIAISGTHG 121

Query: 126 KSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  +  + +   +  +G    I +       +        +  S         
Sbjct: 122 KTTTTSMLSHVALKANVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSFLKF---- 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                 G   N+  DH+DY++      NA  +  + +       
Sbjct: 178 ------------------FPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLV 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
               D      + +   N     ++ G            A  N     +    K F    
Sbjct: 220 AYGEDKNIQSIIKEANCNVITYGINSGDIQAHNIEYDEKACGNFD--VVKDNQKLFSVKL 277

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  + N+L +  + +A  +    ++E +E       RFE  G  +    +  DYAH
Sbjct: 278 NVPGKHNILNSLASICIGLASDMKDKDIIEGIESFFGTHRRFELKGCKN-NITVIDDYAH 336

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   L   +     ++  VF      R         K   D AD  I+ D     E
Sbjct: 337 HPTEISATLDAAKKYPHNKMFCVFQPHTYSRTLTLFDDFTK-CFDNADEIILADIYAARE 395

Query: 424 DPEKIRAEIIHG---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               I    + G            F +  +        IE     D+++  G G
Sbjct: 396 KDTGIINSNMLGDKLRERGLKCTNFHKFDDIK---NYLIENAKDGDLILTVGAG 446


>gi|114566364|ref|YP_753518.1| UDP-N-acetylmuramate--alanine ligase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|123322290|sp|Q0AYQ7|MURC_SYNWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114337299|gb|ABI68147.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 465

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 109/278 (39%), Gaps = 16/278 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      TN+  DH+DY+++      A  R F E +  E  A++Y  DA+++ ++K   
Sbjct: 173 LRPYIALITNVEDDHLDYYKSVDNIRKA-FRQFVEQIRPEGFAMLYGGDAFNRSLVKDLT 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPLPGEFQVYNALVAA 319
                +          +     +I       +      F   F   +PG+    NAL A 
Sbjct: 232 LNKRLLFYGEDLSNDYYFLNWESIGLGSHFDVYKRELGFLGRFELAVPGKHNALNALAAI 291

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              + +G++   +   L+  H    RF+  G  +    +  DYAH    +   +   R  
Sbjct: 292 ASALELGLEMEPIKSALKNFHGARRRFQIQGQKAL-VTVVDDYAHHPTEIRATIDAARNF 350

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGK---IALDLADIAIVTDDNPRSEDP------EKIRA 430
            SGR+IVV+         +  ++G+    AL  AD+AI+T+     E+       E +  
Sbjct: 351 HSGRVIVVYQPHR---YSRTQLLGRQLGEALINADLAIITEVYSAGEEAIPGISGEVVCQ 407

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    +    R E I   +++  + D+++  G G
Sbjct: 408 AAQSIGCHSVYIPQREEIIPYLLQICQENDLIITMGAG 445


>gi|302878822|ref|YP_003847386.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
 gi|302581611|gb|ADL55622.1| cyanophycin synthetase [Gallionella capsiferriformans ES-2]
          Length = 856

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 126/371 (33%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++    +  I    G    ++G T++   + Q  R+ T        A + L
Sbjct: 473 VAVAGTNGKTTTVRLISHIL---GCQGLRVGMTNSDGVYIQGKRIDTGDCSGPKSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL------------GRDHIDYHQTQQA 225
               V     E +  G+ +  L   +      TN+              + +   +    
Sbjct: 530 LHPDVDAAVFETARGGVLREGLAFDRCNVAVVTNIGMGDHLGLNYISTVEDLSVVKRVVV 589

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A   +          A +      S     +  +            + ++++    +
Sbjct: 590 QNVALSGVAVLNAADPMSAAMADICPGSVTFFAQDRSHPVMAAHRAQGKRVVYVEGNQVV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             +      VE             FQ+ NA+ +     A+G+D   +   L         
Sbjct: 650 ACENTFEQRVELSHIPITRNGVIGFQIENAMASIAAVWALGVDWDTIRRGLASFVNDAAT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF F   + RG  +  DY H  +++  ++  ++ + + + +VV    GDR      +
Sbjct: 710 APGRFNF--FDYRGASVIADYGHNPDAILALISAVQNMPAKKRMVVISGAGDRRDEDIRL 767

Query: 402 MGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFI------EKGNRIEAIRTAIE 454
             +I  D+ D  I+  D   R     ++ + +  G+          E      AI TA+ 
Sbjct: 768 QTEILGDVFDEVILYQDQCQRGRADGEVLSLLRAGLINAKRAKITDEINGEFLAIDTALA 827

Query: 455 MLNKQDVLVVA 465
            L   D+ ++ 
Sbjct: 828 RLMPGDLCLIL 838


>gi|326382560|ref|ZP_08204251.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198679|gb|EGD55862.1| UDP-N-acetylmuramate--L-alanine ligase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 492

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 145/457 (31%), Gaps = 45/457 (9%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIA---QGAEAIVVSSAYSLQDFSATIRS- 88
           DSR +      +A+   G +   GH   P+A+     G   +V + A    D    + + 
Sbjct: 48  DSRGV------LALRTRGAQVRIGHS--PEALDVLDGGPTVVVTTRAAVPDDNPELVEAR 99

Query: 89  --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P++        L            +  + ++GT GK+S  S      Q  G+    
Sbjct: 100 RRGIPVVYRPEVLALL---------MQGDRTVLISGTHGKTSTTSMSVVALQHCGVD-PS 149

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 ++    +    +          S  S    T   V  ++   D     G     
Sbjct: 150 FAVGGELNESGTNAHHGSGDVFVAEADESDGSLLQYTPDIVVVTNIEADHLDFFG---SE 206

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            ++  +  D +   ++               L     A                H     
Sbjct: 207 AAYVQVFDDFVALIRSGGTLVLCLDDPGAAALAARCQADCARRGVTVLGYGSTGHTPVDG 266

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V  V      +          +    +  + +  +    LPG     NAL A   C   G
Sbjct: 267 VPVVAELAAVVPHGAGSVATVRLSSPLVEKAQTRELAVTLPGRHMALNALGALIACTRTG 326

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGR 383
            D   V   +E    V  RFE  G       +Y DYAH    +  +L   R +    SGR
Sbjct: 327 QDVDAVAAGIESFGGVHRRFELRGRAR-DVDVYDDYAHHPTEVRAVLTAAREVVAAGSGR 385

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIP 437
           +I VF      R     P  G+ AL LAD  IV D     E P+     ++ ++ + G  
Sbjct: 386 VIAVFQPHLYSRTAEFAPQFGE-ALSLADDVIVADVYGAREQPQPGVTGRLISDAVAGPA 444

Query: 438 GFIEKGNR-IEAIRTAIEMLNKQDVLVVAGKGHETVH 473
            F+   +R  +A+    E   + D+++  G G  T+ 
Sbjct: 445 AFVPDASRIADAVA---ERARRGDLVLTIGAGDITMQ 478


>gi|28572692|ref|NP_789472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei TW08/27]
 gi|62900691|sp|Q83HK0|MURD_TROW8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28410824|emb|CAD67210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei TW08/27]
          Length = 480

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 133/429 (31%), Gaps = 63/429 (14%)

Query: 62  QAIAQGAEAI------VVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF---ASRLY 110
            AI  GA  +      +          S  I  + P++     R+   LS          
Sbjct: 58  DAI--GARYVCAYLDELCEVDVDFIVVSPGISPDNPVIKRLRDRQIPILSEIELAWRVRD 115

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
             +    + +TGT+GK++ A     +  + G      G   T                  
Sbjct: 116 KVNTCPWILITGTNGKTTTALLTGSMLAKDGARVAVCGNIGTP----------------- 158

Query: 171 AKALSYLSSQGVTHVSVEASSHGLD---QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
               +  + +G  +  VE SS  L     H    +K  + +  NL  DH+++H  ++ Y+
Sbjct: 159 -VLDAVRNPKGFDYFVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYY 217

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--------HL 279
            AK R++              D+   K V +       R +  G     +         L
Sbjct: 218 RAKSRVYHGTTGFC--VYNLDDEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGIL 275

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                +  ++   + +   +      L     + + L A  L  ++  +   +   L++ 
Sbjct: 276 CDRAFLSARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDEF 335

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            + P R E V        +    A   +++   L N       R+I++FG    +     
Sbjct: 336 CLSPHRTEVVAKEMGVMWVNDSKATNPHAVIASLSNFS-----RVILIFGGLM-KGVDVS 389

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEM 455
            I  +    +    +V   N      +     I       +   +      EA+  A  +
Sbjct: 390 GIFDRFYETI-KAVVVIGKN------QSFVGNIK--CKKIVCIPDSNDPMSEAVAAADLL 440

Query: 456 LNKQDVLVV 464
               D +++
Sbjct: 441 ATPGDTVLL 449


>gi|303242183|ref|ZP_07328672.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
 gi|302590265|gb|EFL60024.1| cyanophycin synthetase [Acetivibrio cellulolyticus CD2]
          Length = 882

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 14/180 (7%)

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGT 351
           + KD    F    E  + N L A      + +    +   L          PGRF     
Sbjct: 670 KTKDIPITFGGILECNIENCLAAVSALWGLDMPLETIKAGLVSFLPDTSSNPGRFNIFDM 729

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + +DY+H     E ++K ++ + + R++ + G  GDR         +I     D
Sbjct: 730 GEFK--VMLDYSHNPAGFEEVIKFVKKLEANRLVGIIGMPGDRQDSSMCSAAQICAAGFD 787

Query: 412 IAIVTDD-NPRSEDPEKIR-----AEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + +D + R  +P ++        I  G+         +  +A+  AI     +D +V
Sbjct: 788 RLYIKEDADLRGREPGEVAGIFYDEAIKSGVSKENVEIIYSEEKALEKAILDAQPRDFIV 847


>gi|332885965|gb|EGK06209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
           DSM 22836]
          Length = 444

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 115/364 (31%), Gaps = 43/364 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAKRYT---SAKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIGRS---------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  +E SS  L+   +   K       N+  DH+D +   
Sbjct: 141 ---------FARQVAEDNFDYYVLELSSFQLE--NMYSFKADIAILLNITPDHLDRYDHD 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   +E   I + +D    + +++  + G +            +    
Sbjct: 190 MQKYVDAKMRIVQNQTEEDAFIFWEEDPIVSKEIQKLVSKGKQYTFAD-----HKVGNAI 244

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPG---EFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           A     ++ I      F     L        +YN+L +      + I    +   L    
Sbjct: 245 AYPENNEIKIDTPKSIFIMKEDLLALEGTHNLYNSLASGITAKLLDITDENLRHSLSDFQ 304

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R E V        I    A   NS    L++++T      +V+   G D+      
Sbjct: 305 GVEHRLEKVARVRGIQFINDSKATNVNSCWYALQSMKT-----KVVLILGGTDKGNDYTE 359

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           I   +   +  +  +  DN +              I   ++  +  +A+  +  +  + D
Sbjct: 360 IEQLVKDKVRALVFLGVDNSKLHKFFD------GKIDNIVDTSSMKDAVEKSYALAQEGD 413

Query: 461 VLVV 464
            +++
Sbjct: 414 TVLL 417


>gi|298490446|ref|YP_003720623.1| cyanophycin synthetase ['Nostoc azollae' 0708]
 gi|298232364|gb|ADI63500.1| cyanophycin synthetase ['Nostoc azollae' 0708]
          Length = 900

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 9/132 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  T+G+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGKYHALVDYAHNPASYEALGSFVRNWTTGQRIGVIGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAI 453
            +GK++ D+ D  +V +D+      R    + I   I    P   F    +  +AI  A+
Sbjct: 783 TLGKLSADIFDYILVKEDDDTRGRLRGSASDLIIQGITQVKPNSRFESILDETQAINKAL 842

Query: 454 EMLNKQDVLVVA 465
           +M     ++V+ 
Sbjct: 843 DMAPDGSLVVIL 854


>gi|258592730|emb|CBE69039.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           protein (folC) [NC10 bacterium 'Dutch sediment']
          Length = 452

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 13/171 (7%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           F  PL G  QV NA+ A  +   +           +         PGR +          
Sbjct: 270 FDIPLLGRHQVVNAIAAIAVSRLLRTAGAAIPESSIREGLCRTRWPGRLQLFPGRPL--- 326

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           + +D AH       +   +      GR+ +VFG   D++      M +    LA   I+T
Sbjct: 327 LILDGAHNPAGAIALRAFLEEQRFAGRLTLVFGVLQDKNWI---AMLQALAPLAKRVILT 383

Query: 417 -DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             ++ R+ DP ++  E     P      +  EAI  A  + + +D +V+ G
Sbjct: 384 RPESERAADPHRLL-EAERFCPKIEILEDVAEAIALARTVTDPEDTVVITG 433


>gi|270159321|ref|ZP_06187977.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|289165857|ref|YP_003455995.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
 gi|269987660|gb|EEZ93915.1| cyanophycin synthetase [Legionella longbeachae D-4968]
 gi|288859030|emb|CBJ12959.1| Cyanophycin synthetase [Legionella longbeachae NSW150]
          Length = 879

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 115/382 (30%), Gaps = 24/382 (6%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R         LY  H    + +   +G +   + V+ I   +  ++  +G T+T   + 
Sbjct: 462 PRNVAKPILDMLYPSHLSARIPIVAVTGTNGKTTVVRLIAHFARYANHHVGFTTTDGVYL 521

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +  + +        A   L    V    +E +  G+ +  L   +      TN+  DH+
Sbjct: 522 NNKLIHSGDCSGPGSAQVVLYDPEVDFAVLECARGGILRSGLGFDECDISIITNITGDHL 581

Query: 218 DYHQTQQAYFNAK-MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
             +        A+   +      K   AI+ ADD  + E+                    
Sbjct: 582 GLNDIHTLEELAQVKAVVAHSTKKSGYAILNADDNLTYELRNDFDCNIALFSMYESPRIR 641

Query: 277 IHLKKVCAIHNKQQ----------VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            H +         Q           T     K     F       + N L A    +   
Sbjct: 642 KHCRSGGLAAYIDQGKLVVQRGADRTFLSNIKSIPLSFHGAATSMIANILAATLAGVISQ 701

Query: 327 IDSALV----LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
                +             +PGR           ++ VDYAH   +   +   + ++   
Sbjct: 702 FSFDKIKEALHVFYPTFENLPGRMNLFKFPHC--QVMVDYAHNEGAFCELKNYLESVHCA 759

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI----- 436
           + I + G  GDR       +G  A  + D  ++  D + R     +I   ++ GI     
Sbjct: 760 KKIGIIGAVGDRRDEDIEKLGFQAASMFDEIVIRHDKDGRGRTHNEINRLLVSGILRSEF 819

Query: 437 -PGFIEKGNRIEAIRTAIEMLN 457
            P      +   A+   +E+ +
Sbjct: 820 KPSLNIISDEQAALEHVLEVAD 841


>gi|228909738|ref|ZP_04073561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
 gi|228850027|gb|EEM94858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
          Length = 450

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 126/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKEIPIVTEV-----ELAYRISKAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA   E+            +         +K               E     
Sbjct: 219 YSVI-NADDADVMELSADTKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A     + DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEGDVVLL 422


>gi|332187087|ref|ZP_08388827.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
 gi|332012787|gb|EGI54852.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. S17]
          Length = 471

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 157/454 (34%), Gaps = 62/454 (13%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGA------EAIVVSSAYSLQDFSATIRSNTPI 92
            +  G++   + G +E G   I  AI  GA        +V S+A +  +          I
Sbjct: 39  DVAEGYV---VQGLREKG---IAVAIGHGADNLGDAAVVVTSTAITRSNPEVEAALERRI 92

Query: 93  LVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            VV   R+   L+           ++ +AV GT GK++  S V  +    G+    I   
Sbjct: 93  PVV---RRAEMLAELMRL------KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVI-NG 142

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             I+S+  + RL                      + VEA        RLDG        T
Sbjct: 143 GIINSYGSNARLGASD-----------------WMVVEADESDGSFLRLDGTI---AVVT 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  +H+D++ +     +A    F E +P    A++  D    + ++ R  +        
Sbjct: 183 NIDPEHLDHYGSFDRVKDA-FVEFVENVPFYGAALLCLDHPEVQNILPRVRDRRVVTYGF 241

Query: 271 GYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             Q          +          +              P+PG   V NAL A G+ + +
Sbjct: 242 SAQADVRGVNVTPIPGGNRFEAIIRHRDGSSRSIEGIELPMPGRHNVQNALAAIGVALEL 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSG 382
           GID A + +   +   V  RF  VG  +  G    +  DY H    +  +L   R    G
Sbjct: 302 GIDDATIQQGFGQFGGVKRRFTKVGEIAVDGGVATVIDDYGHHPVEIRAVLAAAREGARG 361

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           R+I V         G      + A + AD  +VT      E P +   +    + G   +
Sbjct: 362 RVIAVVQPHRFTRLGNLMEEFQTAFNDADRVLVTPVYAAGEQPIEGV-DASALVEGLKRR 420

Query: 443 GNRIEA-IRTAIEML-------NKQDVLVVAGKG 468
           G+R  A +  A  +           D++V  G G
Sbjct: 421 GHRSTATVADADALAEDLSGSIRADDMIVCLGAG 454


>gi|325479251|gb|EGC82347.1| bifunctional protein FolC [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 422

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 5/168 (2%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +    L G  Q+YNA  A  +         L  E + K  +       +   S   RI V
Sbjct: 245 NIRTNLIGNHQIYNAATALMVIDFFKDKFNLTDEDIYKGMLEAKNPGRLQLISTNPRILV 304

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DD 418
           D +H   +++ +  +I+     ++IV F    D+D     ++ K+   +AD  +VT   +
Sbjct: 305 DGSHNKEAIDALASSIKNYNYDKLIVGFSILEDKDYT--YVIDKLTS-IADEIVVTEITE 361

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           NPR+ + +K+ + +   +P  I   + IEA        N+ D++V  G
Sbjct: 362 NPRAFELDKLYSLVKSKLPNTISIKDNIEAFEYTKNTANENDLVVWCG 409


>gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 445

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F           +   D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEQEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    ++EH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALIEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|126665248|ref|ZP_01736231.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
 gi|126630618|gb|EBA01233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
          Length = 448

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 120/351 (34%), Gaps = 37/351 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I+A+TG++GK++V + V  + + +G      G   T               + L   
Sbjct: 108 DAPIIAITGSNGKTTVTTLVADMARDAGYQVAVGGNIGTP-------------ALDLLNT 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L         +E SS  L+    D +  +A +  N+  DH+D +  + AY+ AK R+
Sbjct: 155 GARL-------YVLELSSFQLET--TDELNALAATVLNVSDDHMDRYPDKMAYYQAKQRI 205

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F         AI+  DDA S  + +      C  ++      F       + H      +
Sbjct: 206 FRG----CQYAIVNLDDALSTPMARNTLRFICFGMNRVNPETFSTRDDSVSGHPWVTWGL 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +         L G   + N + A GL  A G+    +L      H +P R E +   +
Sbjct: 262 --DNLIRADELGLVGRHNLSNVMAALGLGKAAGLPMDSMLATARAFHGLPHRCESLRLVN 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I         +    L ++         +V   GGD        +   A       
Sbjct: 320 GVEYINDSKGTNVGATVAALDSLAPAAGK---IVLIAGGDGKGADFSPLADPARRHCRAV 376

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++        D  +   E++        + +  +A+ +A  +    D +++
Sbjct: 377 VLI-----GRDAAQ-LQEVLAQGTATHIENSLADAVASAARLAQPGDRVLL 421


>gi|126657548|ref|ZP_01728704.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110]
 gi|126621252|gb|EAZ91965.1| hypothetical protein CY0110_29859 [Cyanothece sp. CCY0110]
          Length = 872

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 14/177 (7%)

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSR 354
           +          F + NAL A       G+D   + + +       +  PGR      N  
Sbjct: 681 NVPMTMNGMAPFMIANALAACLAAFCQGVDIEDIRQGVRTFKASANQTPGRMNL--FNLG 738

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VDYAH     E + + ++     R+ VV G G  RD+    ++GKIA  + D  +
Sbjct: 739 DYHALVDYAHNPAGYEAVGEFVKNWKGQRLGVVGGPGDRRDEDL-VLLGKIAAGVFDRIL 797

Query: 415 VTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           V +D+      R E  + I   I+       +    +  EAI   ++ ++K  ++V+
Sbjct: 798 VKEDDDKRGRDRGEAADLIIDGILSENDQADYQAILDETEAIEYGLDKVDKGGLVVI 854


>gi|170760239|ref|YP_001788888.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A3
           str. Loch Maree]
 gi|229486484|sp|B1KTF0|MURC_CLOBM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169407228|gb|ACA55639.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 458

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 120/408 (29%), Gaps = 45/408 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V +A    D    I +    + + +   FL            +  +A++GT GK++  S
Sbjct: 73  IVYTAAIASDNPEIIEAKEKNIKLMDRADFLGNLMKGY-----KYNIAISGTHGKTTTTS 127

Query: 132 FVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +  +  + +   +  +G    I +       +        +  S               
Sbjct: 128 MLSHVALKANVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSFLKF---------- 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G   N+  DH+DY++      NA  +  + +           D 
Sbjct: 178 ------------FPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDK 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + +   N     ++ G            A  N          K F     +PG+ 
Sbjct: 226 NIQSIIKEANCNVITYGINSGDIQAHNIEYDEKACGNFD--VFKDNQKLFSVKLNVPGKH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N+L +  + +A  +    ++E +E       RFE  G  +    +  DYAH    + 
Sbjct: 284 NILNSLASICIGLASDMKDKDIIEGIESFFGTHRRFELKGCKN-NITVIDDYAHHPTEIS 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
             L   +     ++  VF      R         K   D AD  I+ D     E    I 
Sbjct: 343 ATLDAAKKYPHNKMFCVFQPHTYSRTLTLFDDFTK-CFDNADEIILADIYAAREKDTGII 401

Query: 430 AEIIHG---------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              + G            F +  +        IE     D+++  G G
Sbjct: 402 NSNMLGDKLRERGLKCTNFHKFDDIK---NYLIENAKDGDLILTIGAG 446


>gi|17232557|ref|NP_489105.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc sp. PCC 7120]
 gi|25008804|sp|Q8YM75|MURC_ANASP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17134203|dbj|BAB76764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nostoc sp. PCC
           7120]
          Length = 494

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 122/411 (29%), Gaps = 44/411 (10%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +  +    A I    PIL   +    L      +   H    +AV GT GK++
Sbjct: 96  VVCSTAINSNNLEYQAAIELGCPILHRSDVLAAL------INDYHS---VAVAGTHGKTT 146

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL                      P+ I   +  ++  +  +   S  
Sbjct: 147 TSSMIGYMLLEAGLD---------------------PTIIVGGEVNAWEGNARLGQSSYL 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L       G  TN+  DH D++ T +   +      +             
Sbjct: 186 VAEADESDGSLVKHAPEIGIITNIELDHPDHYDTLEEVVDIFQTFAKGCKTLIGSVDCET 245

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLP 307
                +                        +  +    +     +  +GK        L 
Sbjct: 246 VRELLRNASGDRQQPTITYSLHQDTEADYTVTNIDYRADGTTALVWEKGKALGVLKLKLL 305

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + NAL A  +   +G++   + + +        RFEF G    G     DYAH  +
Sbjct: 306 SRHNLSNALAAVAVGRLVGLEFGEIAKGIAGFEGARRRFEFRG-EVDGITFIDDYAHHPS 364

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---LADIAIVTDDNPRSE- 423
            +   L   R        VV      R   +     +   +    AD+ ++TD     E 
Sbjct: 365 EIRATLAAARLQARPGQRVVAIFQPHR-YSRTLTFLEEFSESFSHADLVVLTDIYSAGEP 423

Query: 424 -----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  E +  +I    P  + +          ++ L   D+ +  G G+
Sbjct: 424 NLGLISGENLAEKIAQEHPQVVYQPTLSTVCEYLLKNLRPGDLALFLGAGN 474


>gi|284929364|ref|YP_003421886.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
 gi|284809808|gb|ADB95505.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
          Length = 501

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 127/428 (29%), Gaps = 54/428 (12%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++PQ I       + +      ++ A  +   P+    +    L               
Sbjct: 107 KYLPQVI---CSTAITN---DNSEYLAAKKKGCPVFHRSDILAAL---------ISDYKS 151

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT GK++ +S +  +   +G                    +               
Sbjct: 152 IGVAGTHGKTTTSSLIGYMLLEAG---------------IDPTIIIGGEVDAWDGNARIG 196

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           + +G     V+ S   L +H         G  TN+  DH D++Q      N       + 
Sbjct: 197 AEKGYLVAEVDESDGSLIKH-----HPHIGVITNIELDHPDHYQNLDDVINTFQIFAAQC 251

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                           + +           L    Q  +     V      +        
Sbjct: 252 DILVGSL-------DCEIISSYLSPHITYSLDFNKQADYTVKNLVNDNKGARAEVWERGI 304

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G   V N L A  +   IG++ +++++ L        RFE  G       
Sbjct: 305 YLGKINLTVLGNHNVSNTLAAIAVGRKIGLEFSVIVDSLLNFQSPKRRFEKRGY-CNEIT 363

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDL--ADIA 413
              DYAH  + ++  L   R+    +    +V      R      ++ K A     AD+ 
Sbjct: 364 FIDDYAHHPSEIKATLSAARSKIDNKLANRIVVIFQPHRYSRTFALLEKFATCFNEADLV 423

Query: 414 IVTDDNPRSED------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           ++TD     E        E +  E+    P  +   +  +  +   E+L  +D+++  G 
Sbjct: 424 VLTDIYSAGEINTNNIYGEDLAKEVSKNHPKVLYFPSLEDLPQKLPELLQPKDLVLFLGA 483

Query: 468 GHETVHIV 475
           G+    I+
Sbjct: 484 GNLN-QII 490


>gi|85707767|ref|ZP_01038833.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689301|gb|EAQ29304.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
          Length = 478

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 132/426 (30%), Gaps = 57/426 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA  +V SSA    +            VV   R+   L+           ++ +AV GT 
Sbjct: 67  GAAVVVTSSAVRRTNPEVAHALENRTPVV---RRAEMLAELMRL------KSTVAVAGTH 117

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  +    G     +     I  +  + R+                      
Sbjct: 118 GKTTTTSMIASLL-DCGEIDPTVINGGIIEQYGSNARMGDSD-----------------W 159

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        RLDG        TN+  +H+D++        A    F   +P    A
Sbjct: 160 MVVEADESDGSFLRLDGTI---AVVTNIDPEHLDHYGDFDGVKKA-FVEFIHNVPFYGAA 215

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
           I+  D    + V+    +          Q     +             I  +  + D   
Sbjct: 216 ILCVDHPEVQAVIGDVRDRKVVTYGFSLQADICGVNVRPTESGNTFDVIVRQRGEEDRRI 275

Query: 303 ---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                P+PG   V NAL A  + I +G     +         V  RF  VGT        
Sbjct: 276 EGVHLPMPGRHNVQNALAAIAVAIEMGCSDETICNGFGSFSGVRRRFTKVGTVPFPTGHA 335

Query: 357 RIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKRPIMG--KIALDL 409
            I  DYAH    +  +L   R  T      GR+I V      R      +M   +   + 
Sbjct: 336 TIIDDYAHHPVEIRAVLGAAREATEAAGVEGRVIAV--MQPHRYTRLNDLMDDFQNCFNE 393

Query: 410 ADIAIVTDDNPRSEDPEKIRAE-------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           AD+  +T      EDP +              G        +  +   T  E L + D++
Sbjct: 394 ADMVFITPVYEAGEDPIEGVNSESLVTGLKSRGHRSAQTTPDHDDLAATLAEELREGDMV 453

Query: 463 VVAGKG 468
           V  G G
Sbjct: 454 VCLGAG 459


>gi|319764371|ref|YP_004128308.1| udp-n-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|330826590|ref|YP_004389893.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
 gi|317118932|gb|ADV01421.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|329311962|gb|AEB86377.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
          Length = 477

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 139/438 (31%), Gaps = 56/438 (12%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASR 108
           G     GH     A  QGA+A+V S+A    +          I VV   R   L+     
Sbjct: 50  GVATHVGH---AAAHIQGADAVVTSTAVQQDNPEVLAARERKIPVVP--RAVMLAELMRL 104

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSP 167
             G      +A+ G  GK++  S V  +   +G   +F IG    ++S   + +L     
Sbjct: 105 RKG------IAIAGAHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGTNAKLGQGEY 156

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +    S  S                       +  +    TN+  DH++ +       
Sbjct: 157 IVVEADESDASFLN--------------------LLPVMAVVTNIDADHMETYGHDFGRL 196

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                 F   +P    AI+  D+   ++++               +G  +    V A+  
Sbjct: 197 KQAFVDFLHRMPFYGTAILCVDNPAIRDILPSVTCPVTSYGL--SEGAEVRALDVRAVGT 254

Query: 288 KQQVTISVEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +   ++         D D +  L GE  V NAL A  +   + +    VL  L     V 
Sbjct: 255 QMHFSVQRRNGVTLPDLDVVLNLAGEHNVLNALAAIAVATELNVPDEAVLRALAGFTGVG 314

Query: 344 GRFEFVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            RF+  G           +  DY H    +   +   R    GR +V+        + + 
Sbjct: 315 RRFQRHGDLPAQDGGRFTLIEDYGHHPVEMAATMAAARGAYPGRRLVLAFQPHRYSRTRD 374

Query: 400 --PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIR 450
                 K+    AD  ++T+     E P        +   +   G    +   +  +  +
Sbjct: 375 CFEDFVKVLGT-ADAVLLTEVYAAGEAPIVAADGRSLARALRVAGAVEPVFIDDVADMPQ 433

Query: 451 TAIEMLNKQDVLVVAGKG 468
                    DV++  G G
Sbjct: 434 RIAASAKDGDVVLCMGAG 451


>gi|291546794|emb|CBL19902.1| folylpolyglutamate synthase/dihydrofolate synthase [Ruminococcus
           sp. SR1/5]
          Length = 432

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/399 (13%), Positives = 117/399 (29%), Gaps = 30/399 (7%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L ++N R+ +         +     + V GT+GK SV +++      +G    +    +
Sbjct: 20  VLGLENMRELMRRLG---DPQDELKYVHVAGTNGKGSVIAYLYSALSGAGYRVGRYISPA 76

Query: 152 TISSFAQDNRLTTPSPIY------------LAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
             S   +      P                + + +              A++    +   
Sbjct: 77  VYSYRERMEVNGEPVSREKFAAYVTRIAEVIDEIVKEGKPHPSVFEIETAAAFLYFRDEK 136

Query: 200 DGIKLIAGSF------TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
             + L+          TN+    +       +  +            E  A I   +++ 
Sbjct: 137 CDLVLMEVGMGGDLDATNIISTTVLSILVSISMDHTAFLGNTLGEIAEKKAGIIKPNSHM 196

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V ++             Q          +     + +I+ +   +            Y
Sbjct: 197 VTVKQQPEAEAVIRRICAEQNVPYEAADQDS-AEVLEASITGQTFLYKGEKYTISLAGAY 255

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGRIYVDYAHTSNSL 369
               A     A+ I +               +                  VD AH   + 
Sbjct: 256 QKENAVAALRALEILNEQGYPTTLVQRQDGLKRTTWPGRFALLGTEPDFVVDGAHNPAAA 315

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDNPRSEDPEK 427
           +M+  +I     G+ I ++  G  RD+  R ++ K     AD    I   DNPR+  P++
Sbjct: 316 DMLAASIERYFKGKRI-IYIMGMFRDKDYRKVIRKT-EKYADTILTIAAPDNPRALTPQE 373

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   +           N   A+  A ++  K+DV++  G
Sbjct: 374 LADAVREFHSDVRPFDNIEAAVAEAYQLAGKEDVIIAFG 412


>gi|213963298|ref|ZP_03391555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
           sputigena Capno]
 gi|213954160|gb|EEB65485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
           sputigena Capno]
          Length = 447

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 115/348 (33%), Gaps = 33/348 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++      QI + +GL     G      +                      
Sbjct: 105 VGITGSNGKTTTTLLTHQIFKDAGLQVGLGGNIGYSFAELV------------------- 145

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +++   +  +E SS  LD   ++          N+  DH+D +  +   + A        
Sbjct: 146 ATENPPYYVLEISSFQLD--GIEHFAPHIAVLLNITPDHLDRYDYKFENYIASKFRIAMN 203

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVE 296
             +    I  ADD   +E ++        +     +        K   IH   +   +  
Sbjct: 204 QTENDYLIYDADDPVIEEWLQNHILKVKLIPFSIEKELPYGAFLKDNKIHIMLENQTAET 263

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +       L G+  + N + A+     + I +  + + L+    V  R E V       
Sbjct: 264 TEIDVEEISLRGKHNIKNTMAASVAARLVNIRNNSLRDSLKGFKGVDHRLEEVKVVEGVT 323

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   NS+   L  I+T      IV    G D+      ++  +   +  I  + 
Sbjct: 324 YVNDSKATNVNSVYFALDTIKT-----PIVWIVGGQDKGNDYNALLPYVHEKVKAIVCLG 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            DN      E I     +     IE  +  EA+R A +   + D +++
Sbjct: 379 VDN------EPILRSFSNSGKEMIETQSMDEAVRIAKKFATEGDTVLL 420


>gi|89895655|ref|YP_519142.1| hypothetical protein DSY2909 [Desulfitobacterium hafniense Y51]
 gi|122063244|sp|Q24TE4|MURD_DESHY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89335103|dbj|BAE84698.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 454

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 91/277 (32%), Gaps = 16/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D +++  G   N+  DH+D H T   Y  AK R+FE+  P +   + +
Sbjct: 162 ELSSFQLEW--VDSLRMNVGILLNVTPDHLDRHGTLDNYLAAKARIFEKQSPSDCAILNW 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                   V   A +   RV+             V            +          L 
Sbjct: 220 ----DDARVRALAPHLKARVVFFSPTSLLAEGYGVRGDEVVLAEGGKITPIIARGELQLR 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + A      +G+    + + L     V  R E VGT      I        +
Sbjct: 276 GSHNLENIMAAIAAVRELGLSWEEITQGLRDFKGVEHRQEVVGTYEGILFINDSKGTNPD 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + E  L           IV+   G ++       M  I   +  + +V       E   K
Sbjct: 336 ASEKALYAFEE-----PIVLIAGGKNKGLDFHDFMKTIKKQVKSLVLVGTAAAEMEQAAK 390

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  GI  ++  G   EA+  AI      DV+++
Sbjct: 391 -----DTGIQNYLRAGTFAEAVELAIAEAEPGDVVLL 422


>gi|114564956|ref|YP_752470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336249|gb|ABI73631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
          Length = 440

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S    +         +  I V+ +   F    A          ++ +TG++GKS
Sbjct: 67  ASQIIISPGVPIDTPEVRAALDMGIEVIGDVELFAREIA-----DKKPCVVGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +G S    G   T               + L    +           +
Sbjct: 122 TVTTLVYEMLLAAGKSVAIGGNIGTP-------------ALDLLPQNAD-------FYVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  IA +  N+  DH+D +     Y  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCIAATCLNVSEDHMDRYSDLNTYREAKLRLYPQ----------- 208

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPL 306
                   +  R       +  +      + + +  A           + +  +     L
Sbjct: 209 ----SRFVMYNRDDELTYPLEPMNQNNFGLGVPEGDAWGLSDGKIFHGDSEIINLIDVTL 264

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N L A  L  A G+    ++E  +    +  R E +        I    A   
Sbjct: 265 IGSHNHANLLAAMALADACGVGKEAMIEVAKSFVGLSHRCELIAVKQGVSYINDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L+ + +   G + ++ G  G +    RP+       L++   +T       D  
Sbjct: 325 GATVAALEGLNSHL-GDLYLIAGGDG-KGSDFRPL----TEPLSN---ITQLITLGRDGR 375

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI   +  G    IE     EA+  A E+ +  D++++
Sbjct: 376 KIAK-LKAG---TIEVATMAEAVAKAAELASSGDIVLL 409


>gi|312128117|ref|YP_003992991.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778136|gb|ADQ07622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 458

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 138/405 (34%), Gaps = 43/405 (10%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            + I +  + +VVS    L      +     + V+          A R      +NI+A+
Sbjct: 64  DEVIDR-VQLVVVSPGVPLSKRPLVLAHKKGVEVIGEI-----ELAYRFCK--SKNIVAI 115

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++  + V +I ++        G          +                     
Sbjct: 116 TGTNGKTTTTTLVGEILKKQYEDVVVCGNIGLPFIDTVETS------------------S 157

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T   +E SS  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE +   
Sbjct: 158 ENTIFVLEISSFQLET--IKYFKPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEM 215

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               + Y ++     +     N      +       + ++        +  T  V  KD 
Sbjct: 216 GYTVLNYDNNVTRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYFTFEGKTQEVMKKDE 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   +PG+  + NAL A    +  GI+   + + L+    V  R EFV   +       
Sbjct: 276 IF---IPGQHNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFVAEINGIKFYND 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                +++ E  +   +       I++   G D+ +        +         +     
Sbjct: 333 SKGTNTDAAEKAISAFK-----NPIILIAGGYDKGESF-EKFVSLIAKRVKKVFL----- 381

Query: 421 RSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +   KI +E+   G   F       EA+R + E     DV+++
Sbjct: 382 LGQTKHKIASELEKIGYKNFELVSTLKEAVRKSFESAQNGDVVLL 426


>gi|306836487|ref|ZP_07469460.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
 gi|304567650|gb|EFM43242.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
          Length = 487

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 139/427 (32%), Gaps = 60/427 (14%)

Query: 71  IVVSSAY---SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V S A       +  A   +N P++   +    L               + + GT GK+
Sbjct: 76  VVTSFAAIPQGNPELVAARENNIPLIRRSDLLAALME---------GHTQVLLAGTHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S  S      Q +GL          ++    +    T          S  S    +    
Sbjct: 127 STTSMAVSAMQHAGLD-PSFAIGGQLNRAGTNAHGGTGEAFVAEADESDASLLRYS---- 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN   DH+DY  +  AYF       + + P     ++ 
Sbjct: 182 ----------------PDIAVITNAEPDHLDYFHSADAYFKVFADFADLVTPDTGYLVVC 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL------------KKVCAIHNKQQVTISV 295
           A+D ++ E+ ++A + G  V+  G   K                     +    Q+++  
Sbjct: 226 AEDEHAAEIGEQALSRGINVIGYGGAEKARTTSVPLAATLTAEETTAAGMACTVQLSLPG 285

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   +   +PG   V N++ A    +  G + + + E L     V  RFE+ G+    
Sbjct: 286 VEESVSYQLQIPGHHMVLNSMAALIAGVLSGGEPSTIAEGLADFSGVRRRFEYRGSVDWQ 345

Query: 356 ---GRIYVDYAHTSNSLEMILKNIR-----TITSGRIIVVFG-CGGDRDQGKRPIMGKIA 406
               R++ DYAH    +  +L+  R         GR+I  F      R         + A
Sbjct: 346 GGSVRVFDDYAHHPTEVAAVLRAARAKVAAEGNGGRVIACFQPHLYSRTMEFDAEFAQ-A 404

Query: 407 LDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           L LAD  +V D     E P +     I    +      I + +   A +  + +    D+
Sbjct: 405 LALADAVVVLDIYGAREQPVEGITSRIITNKMPEEMEVIFEPDFSAAAKDVVSIAQPGDI 464

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 465 ILTIGAG 471


>gi|297191289|ref|ZP_06908687.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718424|gb|EDY62332.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 464

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 148/429 (34%), Gaps = 44/429 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G     GH    + +A  A ++VVSSA    +      +   + VV  +   L+   + L
Sbjct: 54  GVTVHIGH--AAEHLADDATSVVVSSAIRADNPELVRAAELSVPVVHRS-DALASLMTGL 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   +AV GT GK++  S +       GL          +     + R        
Sbjct: 111 ------RSIAVAGTHGKTTTTSMLAVALTELGLD-PSYAIGGDLDGPGTNARHGDGDIFV 163

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S  S Q                              N+  DH   + +    + +
Sbjct: 164 AEADESDRSFQKYD--------------------PEVAIVLNVELDHHANYASMDEIYES 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNK 288
                 +++P  +  I        +   K    +  ++++ G  +   + + K+      
Sbjct: 204 FETFAGKIVPGGTLVISADQAGAVELTAKVRDRSSVKIVTYGESEAADVRVHKITPRGLT 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +VT+ ++G+   F   +PG     NA+ A    +A+GI +  +   +     V  R + 
Sbjct: 264 SEVTVLLDGRLLTFTVSVPGRHYALNAVAALAAGVALGIPAHNLASAIGAYTGVKRRLQL 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFG-CGGDRDQGKRPIMGKIA 406
            G  + G ++   YAH    +   L+ +R   +G R++VVF      R Q     MG+ A
Sbjct: 324 KG-EAAGVQVIDSYAHHPTEMTADLEAMRGAAAGSRLLVVFQPHLFSRTQELGTEMGQ-A 381

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQ 459
           L LAD ++V D  P  EDP        I               +   A+   +  M    
Sbjct: 382 LALADASVVLDIYPAREDPIPGITSGLITDAARAAGADVTAVSD-KAAVPEVVAGMAKPG 440

Query: 460 DVLVVAGKG 468
           D+++  G G
Sbjct: 441 DLVLTMGAG 449


>gi|325981161|ref|YP_004293563.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
 gi|325530680|gb|ADZ25401.1| cyanophycin synthetase [Nitrosomonas sp. AL212]
          Length = 857

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 13/234 (5%)

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A +      S        +            + ++++    +         +   +   
Sbjct: 608 VASMAEYCPGSVIFFAHNSHHPVLARHHAQHKRVVYVENDYIVAVSDCSEYRIPLNEIPL 667

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGGRI 358
                  FQ+ N L A G   A+GI  + +   +          PGRF     N R   +
Sbjct: 668 TKNGTIRFQIENVLAAVGAGWALGIGWSDICAGVTNFVNNTQTAPGRFNL--FNYRNATL 725

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H  ++++ ++  I  I S +  VV    GDR         +I  D  D  ++  D
Sbjct: 726 IADYGHNPDAIQALVSAIENIPSRKRSVVISAAGDRRDEDIRQQTRILGDAFDEVVLYQD 785

Query: 419 NP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              R     ++ + +  G+          E      AI  A+  L   D+ ++ 
Sbjct: 786 KCQRGRADGEVLSLLREGLENARRTQKIREIIGEAIAIDAALSNLQDGDLCLIL 839


>gi|297181730|gb|ADI17911.1| folylpolyglutamate synthase [uncultured Desulfobacterales bacterium
           HF0200_07G10]
          Length = 443

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 8/152 (5%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               L           L    ++    GR E   T S    + +D AH  +S++ + K +
Sbjct: 269 ACLALNENGFNIEEEHLRQGLEMVSWEGRLE---TVSFNPTVVLDCAHNEDSVKNMTKEL 325

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIH 434
           R      R  +V G   D++      + KI   L D   +   NP R E  EK+  ++  
Sbjct: 326 RENFKFSRCFIVLGLMQDKNID---EIIKILSRLGDQFFLVSVNPPRGETSEKLAKKLKS 382

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   G   +A++    + N+ D++ + G
Sbjct: 383 HNKASQAFGTISDALQAVKHIANQDDLICITG 414


>gi|302036133|ref|YP_003796455.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
 gi|300604197|emb|CBK40529.1| UDP-N-acetylmuramate-L-alanine ligase [Candidatus Nitrospira
           defluvii]
          Length = 460

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 143/415 (34%), Gaps = 48/415 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+SSA +  +    + +    + V    + L+      +G      +A+ G  GK+
Sbjct: 65  AQVVVISSAVAATN-PEVVAAKARQIPVIPRAEMLAELMRLKFG------VAIAGAHGKT 117

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S V  +  + G   +  IG    +++     RL     +      S  S        
Sbjct: 118 TTTSMVANVLAQGGLDPTMVIG--GKVNALGSHARLGRGDLLIAEADESDGSFLR----- 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +     + TN+ R+H+D++ + +   ++    F   +P    A++
Sbjct: 171 ---------------LAPTIAAVTNIDREHLDHYGSMEKLNDS-FLEFVNKVPFYGLAVL 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
            +DD   + ++ R            + G         +       +  +   G++   F 
Sbjct: 215 CSDDERLRNLLPRVVKRYQTYGLHEHPGHVPDFRATDISLRQWGSEFRVFFRGRNLGPFR 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V N+LVA  + + + I   L+ + L     V  RF   G    G  +  DY 
Sbjct: 275 LSIPGIHNVSNSLVAIAIGMELDIPVDLIRKGLAAFSGVERRFHLRG-EKAGIMVVDDYG 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    +   +   +     R++V+F     R    R +M + A     AD   +T+    
Sbjct: 334 HHPTEVRATIAAAKQGWDRRVVVLF--QPHRYSRSRDLMQEFAHAFDQADALFMTEIYAA 391

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIE--AIRTAIEMLNKQDVLVVAGKG 468
            E P       K+   +            R +  A    +  L   D+++  G G
Sbjct: 392 GEQPIPGVSGAKLVEAVQAAGHPSATFVERKDTMA-EQVLPTLKSGDLVITLGAG 445


>gi|254478616|ref|ZP_05091989.1| FolC bifunctional protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035470|gb|EEB76171.1| FolC bifunctional protein [Carboxydibrachium pacificum DSM 12653]
          Length = 428

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 124/398 (31%), Gaps = 38/398 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N R+ L    +    +    I+ V GT+GK S +SF+  I + +G              
Sbjct: 23  ENIRRLLGYIGN---PEKNLKIIHVAGTNGKGSTSSFISSILKEAGYKVALYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIY------------LAKALSYLSSQGVTHVSVEA------SSHGLDQH 197
             +                       +A+ +    +       + A      S   +D  
Sbjct: 80  EERMKINGENISREKLVYYVEYIKPIIARMVREGYNHPTEFEVITAIAFKYFSDEEVDFV 139

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            L+         TN     +    T   Y +               A I           
Sbjct: 140 VLEVGLGGRFDATNAISSSLVSVITSIDYDHMDKLGNTLGDIAYEKAGIIKKKGVVVSFY 199

Query: 258 KRAHNAGCRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++         +   +  ++ +     V          +       D    L G  Q+YN
Sbjct: 200 QQEEALKVINDACEVKEAYLTVLDKSNVVIKEQNSDFQVFDYKNFKDLKITLLGTHQIYN 259

Query: 315 ALVAA-----GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           A +A         I         ++        PGR E +        + +D AH    +
Sbjct: 260 ASLAVEVIQKLKNIYGYRIEEEAIKRGLMSAKWPGRLEVMKKRPY---VVIDGAHNPQGM 316

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI 428
            ++ ++++     R+I+V G   D++  K   M  I   +AD+ I T   + R+   + +
Sbjct: 317 TVLKESLKLFNYRRLILVIGMLKDKEVNK---MLNIITPVADVIITTTPLSDRAYSAKDL 373

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            ++I              +A+  A++M  ++D+++  G
Sbjct: 374 ASKISRN--SVFAVDQIDKAVNEALKMAGEEDMVLFCG 409


>gi|220918994|ref|YP_002494298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956848|gb|ACL67232.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 462

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 131/404 (32%), Gaps = 46/404 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +V S    L +          + V           A+R  G  P  I+ +TGT+GK
Sbjct: 70  GAELVVASPGVPLANPEIQEARRRGVAVWGEV-----ELAARFLGGLP--IVGITGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+  +    +       +F  G   T  S      + +  P   A               
Sbjct: 123 STTTALTGALL-ARDRRTFVGGNLGTPLSEL----VLSGEPADAA--------------V 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS  L+   ++  +    +  N+  DH+D +    AY  AK RLF      +  A+ 
Sbjct: 164 VELSSFQLE--GIERFRARVAAVLNVTPDHLDRYPDVDAYAAAKARLFAT-QQPDDVAVA 220

Query: 247 YADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D  +  +        H  G    +                            +    
Sbjct: 221 NARDPRALAMAGASRADLHTFGFGAPTPASARDEGGEPGPEGTAIWFTPRGRAPERYQLR 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G     NA+ A      +G+    V   L+    +  R E V        +    
Sbjct: 281 NRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHHRLELVAEGRGVEWVNDSK 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNP 420
           A   +S  + L    +  + R++++ G  G +      RP+ G         A++T    
Sbjct: 341 ATNVDSTFVGLAAFPS-GAPRVVLIMGGRGKKAPYAPLRPLFGGRV-----KALLTI--- 391

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ED   I  E +  +      G+  +A+R A  +    DV+++
Sbjct: 392 -GEDAPAIERE-LGDLAPTEPCGDLADAVRRAAVLSGPGDVVLL 433


>gi|110803060|ref|YP_699195.1| FolC bifunctional protein [Clostridium perfringens SM101]
 gi|110683561|gb|ABG86931.1| FolC bifunctional protein [Clostridium perfringens SM101]
          Length = 441

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 132/391 (33%), Gaps = 47/391 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
                 + + GT+GK S  + +  + + +G                +             
Sbjct: 37  HKDTKFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENINKDDL 96

Query: 164 ----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                 T   I  A    Y S + V +  +E    G    RLD 
Sbjct: 97  AILMGDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGG----RLDA 152

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             +I      L    +D+            +    ++    P I Y  +  + EV+K   
Sbjct: 153 TNVILPEIVVLTSISLDHMNILGNTIEEIAKEKCGIIKGGVPVISYPQEEKALEVIKERC 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N     L V Y     ++  +    + Q++ +S+E +       L G+ QV N L+A   
Sbjct: 213 NELGCNLEVVYTKDIRNII-IDKEKHVQKIEVSLEDEILKIDLCLLGDHQVKNFLLALKT 271

Query: 322 CIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            I +  +    S   ++   K     GR E +   +    + +D AH  + +  +  +I 
Sbjct: 272 LIKLRNNGVNISNEAIKEGFKKVRWIGRMEVL---NENPLVVIDGAHNIDGIRSLRNSID 328

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
              + + I ++ G  GD+       M +      D  ++ + +  R+ED E +  ++   
Sbjct: 329 KYFNFKNITLILGVLGDKQVD---EMVEEITRGVDRVVIVEPHSDRAEDIEDLYIKVKKY 385

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    +  +  EA   A  + N  D+L++ G
Sbjct: 386 VKEVFKFKDYKEAYNKAYSLTNDDDLLLICG 416


>gi|89902193|ref|YP_524664.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
 gi|109892729|sp|Q21SX0|MURC_RHOFD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89346930|gb|ABD71133.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
          Length = 477

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 90/435 (20%), Positives = 144/435 (33%), Gaps = 61/435 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH     A   GA+A+V S+A    +          I VV   R   L+       G   
Sbjct: 56  GH---EAAHVAGADAVVTSTAVQADNPEVLSAREKHIPVVP--RAVMLAELMRLKTG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +   +G   +F IG    ++S   + RL     I +   
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGVNARLGQGDYIVVEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH++ +             
Sbjct: 163 ESDASFLN--------------------LSPVMAVVTNIDADHMETYGHDFGRLKQAFVD 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P    AI+  DD   ++++ +             +G  +    V A+  +   T+
Sbjct: 203 FLHRMPFYGTAILCTDDPAVRDIVPQVTCPISSYGF--EEGAELRAVNVRAVDGQMHFTV 260

Query: 294 SVEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                    D D +  L G   V NAL A  + + + I  A+V + L     V  RF+  
Sbjct: 261 QRRNGVVLPDLDVVLNLAGRHNVLNALSAIAVAVELNIADAVVQKALAGFKGVGRRFQRY 320

Query: 350 G----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR---PIM 402
           G     +     +  DY H    +   L   R    GR  +V      R    R      
Sbjct: 321 GEVRAQDGGTFTLIDDYGHHPVEMAATLAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDF 379

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------AIRTAIE 454
            K+    AD  ++ +     E P  I A     +   +    RIE        A+  AI 
Sbjct: 380 IKVIAQ-ADAVLLAEVYGAGEAP--IVAADGRTLARALRVAGRIEPVFVDDIAAMPQAIA 436

Query: 455 -MLNKQDVLVVAGKG 468
                 DV++  G G
Sbjct: 437 DNARDGDVVLCMGAG 451


>gi|167564198|ref|ZP_02357114.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           EO147]
          Length = 464

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 142/428 (33%), Gaps = 51/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLGVPIVP--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R          +  + V A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCIDDPNVRQIVPLISRPVVRYGF--APDAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G  
Sbjct: 261 LREGREPLPVVLNLPGLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 353 SRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 321 PVAGGAYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 379

Query: 410 A--DIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +  D  ++T+     E P      + +   +   G    +      E      ++    D
Sbjct: 380 STVDALVLTEVYAAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARAGD 439

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 440 VVITMGAG 447


>gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
          Length = 452

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 125/419 (29%), Gaps = 53/419 (12%)

Query: 60  IPQAIAQGAEA------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-------LFA 106
           I + +A GA        ++      L   S  +  +TP L      + L          A
Sbjct: 46  IAELLAMGAAVETGGHGLLTFRRQDLIVVSPGVPMDTPELKQ---VRALGVEMIGEVELA 102

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           SR       +++A+TG++GK++  S + +I + +G+ +   G               T  
Sbjct: 103 SRFLN---GSVVAITGSNGKTTTTSLIGEILRGAGVPTLVGGNIGLPVVEMVAESTDT-- 157

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                           T   +E SS  L+               N+  DH+D H T + Y
Sbjct: 158 ----------------TWSVLEISSFQLETVETFA--PKIAVVLNITPDHLDRHGTFEKY 199

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK R+ E   P +   +   D        K              +             
Sbjct: 200 AEAKTRITEMQTPADFLVLNAEDKPTQMVAAKTKAQIFWFSPRRPIKQGAFVHGDSILFL 259

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            ++      E        PL G   V N L A   C   G+ S  + E +     V  R 
Sbjct: 260 PREGG--KAEPVMPVSEIPLVGAHNVENVLAAVCACRLAGVSSEKIREGVRGFKAVDHRL 317

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FV   +         A   ++    L +           V    G +D+G         
Sbjct: 318 QFVAEVAGVKYYNDSKATNVDATAKALASFEG-------NVLLILGGKDKGSDY---TEL 367

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            DL    +VT     S    +     + G+           A+  A E     D +++A
Sbjct: 368 NDLLRERVVTVYTIGS--AAEKIETQLAGVMTLKHAETLERAVALATEDAKAGDTVLLA 424


>gi|322385905|ref|ZP_08059547.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
 gi|321270084|gb|EFX53002.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
          Length = 455

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 125/361 (34%), Gaps = 43/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +       I+ +TG++GK++  + + ++    G +    G     +S    +   
Sbjct: 109 ELAYLISDAP---IIGITGSNGKTTTTTMIAEVLTAGGQNGLLSGNIGFPASQVAQDASE 165

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T                    + +E SS  L    ++         TNL   H+DYH + 
Sbjct: 166 T------------------DTLVMELSSFQL--MGIEAFHPEIAVITNLMPTHLDYHGSF 205

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK  + + +   +   + +  D  +KE+ K+         +            V 
Sbjct: 206 EEYVAAKWNIQKNMTASDYVVLNFNQD-LAKELAKKTAAKVLPFSTKEKVDGAYLDGDV- 263

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                  +T   E         +PG   V NAL    +    GID+ ++ E +     V 
Sbjct: 264 -------LTFRGEVIMKASELGVPGSHNVENALATIAVAKLRGIDNQVIRETMAHFGGVK 316

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R ++VG  ++        +     +    K +    + ++I++   G DR      ++ 
Sbjct: 317 HRLQYVGEINQVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFDELVP 372

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I   L  + I+       E   +++         +++  +  +A R A  +    DV++
Sbjct: 373 DIKG-LKKMVIL------GESAARVKRAADQAEVSYLDASDVRDATRKAFSVAEPGDVVL 425

Query: 464 V 464
           +
Sbjct: 426 L 426


>gi|307244134|ref|ZP_07526252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492505|gb|EFM64540.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 454

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 138/362 (38%), Gaps = 35/362 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R   +     + +TGT+GK++  S V +IC+ +GL ++ +G     +         
Sbjct: 99  ELAYREGQEKNIKFIGITGTNGKTTTTSIVGEICKEAGLDTYVVGNIGNPAI-------- 150

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                      +   +Q    + +E SS  L+   +   +    +  NL  DH++ H T 
Sbjct: 151 ----------SAVEEAQPGAVLVIELSSFQLEA--VYDFRPEVSTVLNLTEDHMNRHHTM 198

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK  +F +  P+    + Y DD  ++++                    I+L    
Sbjct: 199 ENYAKAKANIFAKQTPESVCVLNY-DDPITRDMGNTCQARPVYFSRQSRPEAGIYLDDNK 257

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I   +           D   P  G   + N++ A GLC+  GID  ++ + L     V 
Sbjct: 258 NIIAVKDGREVEIVNAEDLSLP--GGHNLENSMAAIGLCLHFGIDKEIIKKVLTTFKAVE 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E+V T +    +        +S    +++ +T      I++   G D+    R +  
Sbjct: 316 HRLEYVNTVNGVVYVNDSKGTNPDSTIKAVQSYKT-----PIILIAGGYDKGSDFRELF- 369

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            IA++     +V       +  + I       GI    +  +  EA+  A ++ +K DV+
Sbjct: 370 DIAVNYVRTVLVI-----GQTADLIADTAFKAGIKEIYKLDSLKEAVIKASQIADKDDVV 424

Query: 463 VV 464
           ++
Sbjct: 425 LL 426


>gi|30316124|sp|Q9F1N2|MURD_SHEVD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|11761333|dbj|BAB19200.1| MurD [Shewanella violacea]
          Length = 449

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 132/398 (33%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S   ++         +  I V+ +      LFA  +  + P  ++ +TG++GKS
Sbjct: 67  ASQIVISPGIAIDTPEIRAAIDMDIEVIGDVE----LFARAIKDRSP-CVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +GL+    G                  P+ L                +
Sbjct: 122 TVTTLVGEMAKAAGLNYAVGGNIGIPVLDLLQK------PVDL--------------YIL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   +AY  AK+ L+             
Sbjct: 162 ELSSFQLET--THSLNCISATCLNISEDHMDRYSDLEAYRQAKLALY------------- 206

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D   + +  R  +       +      +          K    +    +         
Sbjct: 207 --DQSKRALFNREDSLTQPNDPMNQNSFGLTSPVNDEWGVKDGKIVHGTTEIASLQDVAI 264

Query: 308 GEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                +  L  A  L    GID   +++  +    +  R E V   +    +    A   
Sbjct: 265 VGSHNHANLIAAMALAYHAGIDKEPMIQVAKNFTGLAHRCELVANIAAVAYVNDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L+ +     G II++ G  G +     P+   +   +A +  +  D        
Sbjct: 325 GATVAALEGLGEHL-GDIILIVGGDG-KGADFTPLET-VFNKVAHLITLGKDG------- 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +I        +  +  +A++ A E+    D++++
Sbjct: 375 ---DKIAALKEHSHKADSMADAVKQAAELATAGDIVLL 409


>gi|118581688|ref|YP_902938.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
 gi|166224713|sp|A1AU60|MURC_PELPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118504398|gb|ABL00881.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
          Length = 460

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 123/408 (30%), Gaps = 40/408 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V+SSA    +          + V+    + L+      +G      +A+ GT GK++ 
Sbjct: 67  VVVISSAVHDDNPEVVEAKRLHVPVIPRA-EMLAELMRMKFG------IAIAGTHGKTTT 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S    I                             + I     L             + 
Sbjct: 120 TSMAASI-------------LGHAGIDPTIVIGGKLNAIGTNAQLGQGKFLLAEADESDG 166

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S   L               TN+  DH+D++             F   +P    A++  D
Sbjct: 167 SFLVL--------SPTIAVVTNIDADHLDHYSGGIEEIKDTFVKFINKVPFYGMAVLCLD 218

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   + ++ R                     +                +  +  F +PG 
Sbjct: 219 DPNIRAILPRVKKRYMTYGLSSQADIRATHVRHDGFTTSFTAHFK-GYRLGEISFTMPGA 277

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA+    + + + +  + + E   +   V  RF   G   RG  +  DY H    +
Sbjct: 278 HNVLNAMACIAVALELDVPFSAIQEGFSRFGGVGRRFTIKG-EPRGITVVDDYGHHPAEI 336

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-- 425
           +  L   R     R I V      R      + G+       AD+ I+TD     E P  
Sbjct: 337 KATLAAARLGWPERRI-VAVFQPHRYTRTHELFGEFVTAFYDADVLILTDVYAAGEQPVE 395

Query: 426 ----EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E++  EI+ HG        NR    +  + ++ + D+++  G G
Sbjct: 396 GATAERLSQEILRHGQKDVTWIPNRELIPQHLLGIVKEGDMVITLGAG 443


>gi|119511605|ref|ZP_01630712.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
 gi|119463766|gb|EAW44696.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
          Length = 495

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 132/416 (31%), Gaps = 43/416 (10%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +  +    A +    PIL   +    L      +   H    +AV GT GK++
Sbjct: 97  VVCSTAINANNLEYKAALELGCPILHRSDVLAAL------ISDYHS---IAVAGTHGKTT 147

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL                D  +     +   +  + L          +
Sbjct: 148 TSSMIGYMLLEAGL----------------DPTIIVGGEVDAWEGNARLGQSQYLVAEAD 191

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D+++T +   N   +  +      S    Y 
Sbjct: 192 ESDGSLVKH-----APEIGIITNIELDHPDHYETLEEVVNIFQKFADSCKTLISCIDCYQ 246

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLP 307
                +                           +    +     +  +GK        L 
Sbjct: 247 VRDLLRNSGGDRFKPTITYSLNPETDADYTATNIDYRADGTTALVWEKGKALGVLKLRLL 306

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + NAL A  +  A+G++   + + +        RFEF G    G     DYAH  +
Sbjct: 307 SRHNLSNALSAVAVGRALGLEFGTIAKGIATFEGARRRFEFRG-EVGGITFIDDYAHHPS 365

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSE-- 423
            + + L   R        VV      R       + + A     AD+ ++TD     E  
Sbjct: 366 EIRVTLAAARLQARPEQRVVAIFQPHRYSRTFTFLAEFAESFTHADLVVLTDIYSAGEPN 425

Query: 424 ----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                 E++ AEI    P  + + N        ++ L   D+ +  G G+    ++
Sbjct: 426 LGQISGEQLAAEIAKLHPQVLYQPNLPLMSEFLLQTLRPGDLALFLGAGNLN-QVI 480


>gi|256545068|ref|ZP_05472435.1| tetrahydrofolate synthase [Anaerococcus vaginalis ATCC 51170]
 gi|256399271|gb|EEU12881.1| tetrahydrofolate synthase [Anaerococcus vaginalis ATCC 51170]
          Length = 428

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 72/193 (37%), Gaps = 4/193 (2%)

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              +  ++                  +    L G+ Q+YNA  A         +  L   
Sbjct: 221 YKFNFDEIKIKTQNDNYNEFDFRNYKNIKTSLIGKVQIYNACNAINFLDYFKEEFFLDEN 280

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +++          +   S+  ++ +D +H   S++ ++K+++     R+IV F    D+
Sbjct: 281 IIKEGIFESKNSGRMELISKSPKVLIDGSHNKESIDALIKSLKLFKYNRLIVGFSVLKDK 340

Query: 395 DQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D      + +    +AD  ++T  DNPR+ D  ++   +           N   A   + 
Sbjct: 341 DYDY---IIENLSSVADEMVITKVDNPRAFDLGELEKIVREKFANVNAIDNIKNAYEYSK 397

Query: 454 EMLNKQDVLVVAG 466
           ++  + D+++  G
Sbjct: 398 QIAKENDLVLWCG 410


>gi|24379029|ref|NP_720984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           mutans UA159]
 gi|30316024|sp|Q8DVE3|MURD_STRMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24376923|gb|AAN58290.1|AE014899_9 putative D-glutamic acid adding enzyme MurD;
           UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Streptococcus mutans UA159]
          Length = 451

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 63/380 (16%), Positives = 132/380 (34%), Gaps = 50/380 (13%)

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  N P++    T   L+   S         I+ +TG++GK++  + +  +   +G S+
Sbjct: 92  ALEKNIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIADVLNHAGQSA 141

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G     +S      +T    +                  +E SS  L     +    
Sbjct: 142 RLSGNIGFPASEVA-QPVTEKDIL-----------------VMELSSFQL--MGTESFHP 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL   HIDYH + + Y  AK  + + +  ++   + +  D         A+   
Sbjct: 182 HMAVITNLMPTHIDYHGSFENYIEAKWNIQKNMTKEDFLVLNFNQD----LAKDLANQTQ 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +++    + K         +   +   I    +       +PG   V NAL    +   
Sbjct: 238 AKIIPFSTKEKVDGAYLDGQMLCFKGQAIMSASE-----LGVPGSHNVENALATIAVAKL 292

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+ +  + E L     V  R + +G  +         +     +    K +    + ++
Sbjct: 293 SGVSNEAIRETLIHFGGVKHRLQSLGNIAGVKFYNDSKSTN---ILATQKALSGFDNSKV 349

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           I++   G DR      ++  I   L  + I+ +  PR        A +  G+  ++   +
Sbjct: 350 ILI-AGGLDRGNEFDELVPDIKG-LKKMIILGESAPR-----LKHAAVQAGVT-YLNAKD 401

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
             +A R A +  +  DV+++
Sbjct: 402 VAQATRIAFQEASPGDVVLL 421


>gi|198282524|ref|YP_002218845.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667206|ref|YP_002424714.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|226706334|sp|B5ELC2|MURC_ACIF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711856|sp|B7J3V1|MURC_ACIF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198247045|gb|ACH82638.1| UDP-N-acetylmuramate/alanine ligase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519419|gb|ACK80005.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 464

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 83/433 (19%), Positives = 136/433 (31%), Gaps = 51/433 (11%)

Query: 51  GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFAS 107
           G +   GH     A  +GA+ +V+SSA    +          I V    R+   L+    
Sbjct: 50  GARIFSGH---EAANVRGADVVVISSAIPESNPEVQAARELRIPV---IRRAEMLAELMR 103

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPS 166
              G      +A+ GT GK++  S V  I    G   +F IG    + S      L +  
Sbjct: 104 FKQG------IAIAGTHGKTTTTSLVASILGAGGLDPTFVIG--GRLKSAGTHAALGSGE 155

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +      S  S                       +  +    TN+  DH++ +      
Sbjct: 156 YLVAEADESDASFLY--------------------LSPVMAVVTNIDADHMETYGGSLDN 195

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH---LKKVC 283
                  F + LP    A++  D+A    ++        R               ++ + 
Sbjct: 196 LRGAFLQFLQRLPFYGLAVLCTDEAVVAGLIPELRTPVLRYGFGADADLQARDVTVQGIG 255

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +     +   S      D    +PG   V NAL A G+   +GI  + +   L     V 
Sbjct: 256 SRFAVWRRVDSDYVHWLDVELGIPGRHNVLNALAAIGIASKVGIPESTIATALADFRGVG 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RFE VG    G  +  DY H    +   +   R++   R +VV      R    + +  
Sbjct: 316 RRFELVG-TFDGITVVDDYGHHPREIAATIAAARSVWPERPLVV-AFQPHRYSRTQALFA 373

Query: 404 KIALDL--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                L  AD  I+TD     E          +   +           + + A +     
Sbjct: 374 DFVSSLAAADRVILTDIYSAGEKALPGVTGRALAEAMAAQGMSVRFLPDLLTAPQQIRAE 433

Query: 456 LNKQDVLVVAGKG 468
           L    VL+  G G
Sbjct: 434 LPAGAVLLTLGAG 446


>gi|84496501|ref|ZP_00995355.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
 gi|84383269|gb|EAP99150.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
          Length = 972

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 115/393 (29%), Gaps = 50/393 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ +  +  I +  G      G TST      +  +          A   L
Sbjct: 502 VAVTGTNGKTTTSRMIAHIMKGVGRKV---GMTSTDGIVVDERLVFKADASGPKSARMVL 558

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEE 236
            +  V    +E +  G+ +  L   +      TN+  DH+                +  E
Sbjct: 559 QNPRVDFAVMEVARGGILREGLGYDRNDVAVVTNVAPDHLGLRGINTVEQLADVKAVIVE 618

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG---------YQGKFIHLKKVCAIHN 287
            +P+   A++ ADD   +++ KR   +                         + +    +
Sbjct: 619 AVPRNGFAVLNADDPLVRKMRKRCSGSIVWFTMSPPGSAVREFVDDHCRRGGRAIVLEPS 678

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----- 342
            +   I +                      A          +         LH +     
Sbjct: 679 DKGDMIVIRHGRRAMQLAWTHLLPATFGGTAMFNVANAMAAAGAAFAVGTGLHEIRQGLR 738

Query: 343 ---------PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---------- 383
                    PGR      N     + VDY H +  ++++   +      +          
Sbjct: 739 TFSTSYYLSPGRM--NQVNVNNIDVIVDYCHNAPGMKVLGDFVERYADAKAGSSELGKIS 796

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHG------- 435
            + V    GDR       +G IA    D+ +V +D   R   P +    +  G       
Sbjct: 797 RLAVIATAGDRRDEDMRELGSIAAHHFDVMVVREDERLRGRKPGETAGLVAEGAKAAMAD 856

Query: 436 ---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                        + A+R  +   N  D++VV 
Sbjct: 857 GARCRQVEVVTEELSAVRHVMARANPGDIVVVC 889


>gi|317473718|ref|ZP_07933005.1| UDP-N-acetylmuramate-alanine ligase [Anaerostipes sp. 3_2_56FAA]
 gi|316898839|gb|EFV20866.1| UDP-N-acetylmuramate-alanine ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 460

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 77/275 (28%), Gaps = 11/275 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+D+        ++  +   +L       +    D  S  V      
Sbjct: 178 FPKISIILNIEEDHMDFFHDINEIRDSFKKFAHKLPEDGLLVLNGEIDDISYIVEGLKAK 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +               ++ +                  + G   + NAL AA + 
Sbjct: 238 YVTYGIDNDEFTYTAKNISYDSMGHGHFDLYKEGTFVDSLSLNVNGLHNINNALSAAAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+    V   L        RFE+ G    G  +  DYAH    ++  L   +     
Sbjct: 298 DFLGLSIDTVKAGLLTFSGAKRRFEYKG-TCGGFTVIDDYAHHPTEIKATLNACKNYPHK 356

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED------PEKIRAEIIHG 435
            +  VF      R         +      D  I+TD     E          +  +I   
Sbjct: 357 ELWCVFQPHTYTRTNAFLDEFAEALSQ-CDHVIITDIYAAREKDTGMVHARDLADKIEKT 415

Query: 436 IPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKGH 469
                   +  +AI    ++   K D+L+  G G+
Sbjct: 416 GTDVRYIKD-FDAIEEFILKKCKKNDLLITMGAGN 449


>gi|126741300|ref|ZP_01756978.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
 gi|126717618|gb|EBA14342.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
          Length = 471

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 138/418 (33%), Gaps = 55/418 (13%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V+SSA      +         P++   +    L            ++ +A+ GT G
Sbjct: 71  AAVVVISSAIKPGNPELDEARLRGLPVVRRADMLAELMRL---------KSNIAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + ++    G     I     I ++  + R+                      +
Sbjct: 122 KTTTTTMMAELMVAGGFDPTII-NGGIIHAYGSNARMGQGE-----------------WM 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++              F   +P    A+
Sbjct: 164 VVEADESDGSFNRLPATI---AVVTNIDPEHMEHWGDFDTLRQ-GFHDFVSNIPFYGIAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---F 302
              D    + ++ R  +          Q        +          + ++ +D      
Sbjct: 220 CCTDHPEVQTLVGRISDRRVVTYGFNAQADV-RASNLTYKGGVAHFDVHLQAEDRVIEGC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G++S+ + E L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAVAVARHLGMNSSEIREALAAFGGVNRRFTKVG-EVDGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    +  +LK  R    GR+I V      R      +          AD+  + +   
Sbjct: 338 GHHPVEIAAVLKAARQACEGRVIAV--HQPHRYSRLSSLFDDFCACFNEADVVAIAEVFA 395

Query: 421 RSEDP--EKIRAEIIHGIPGF--------IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             EDP     R +++ G+           +++G+     R   E     D++V  G G
Sbjct: 396 AGEDPIEGASRDDLVAGLVRHGHRHARALMDEGDLE---RLVREQARPGDMVVCLGAG 450


>gi|153940015|ref|YP_001392902.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum F
           str. Langeland]
 gi|166222975|sp|A7GJE2|MURC_CLOBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152935911|gb|ABS41409.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|295320879|gb|ADG01257.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           230613]
          Length = 458

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 124/408 (30%), Gaps = 45/408 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V +A    D    I +    + + +   FL            +  +A++GT GK++  S
Sbjct: 73  IVYTAAIASDNPEIIEAKEKNIKLMDRADFLGNLMKGY-----KYNIAISGTHGKTTTTS 127

Query: 132 FVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +  +  + +   +  +G    I +       +        +  S               
Sbjct: 128 MLSHVALKANVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSFLKF---------- 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G   N+  DH+DY++      NA  +  + +           D 
Sbjct: 178 ------------FPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDK 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + +   N     ++ G            A  N     +    K F     +PG+ 
Sbjct: 226 NIQSIIKEANCNVITYGINSGDIQAHNIEYDEKACGNFD--VVKDNQKLFSVKLNVPGKH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N+L +  + +A  +    ++E +E       RFE  G  +    +  DYAH    + 
Sbjct: 284 NILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKN-NITVIDDYAHHPTEIS 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   +     ++  VF      R         K   D AD  I+ D     E D   I
Sbjct: 343 ATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTK-CFDNADEIILADIYAAREKDTGII 401

Query: 429 RAEIIHG--------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++++             F +  +        IE     D+++  G G
Sbjct: 402 SSDMLGDKLRDRGLKCTNFHKFDDIK---NYLIENAKDGDLILTVGAG 446


>gi|148269826|ref|YP_001244286.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           petrophila RKU-1]
 gi|166224768|sp|A5IKI7|MURD_THEP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147735370|gb|ABQ46710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           petrophila RKU-1]
          Length = 430

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 112/363 (30%), Gaps = 57/363 (15%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
                L    P+ ++ +TGT GKS+  + +  +    G  SF  G   T +         
Sbjct: 91  ELQFFLDNVDPKKVVGITGTDGKSTATALMHHVLSERGFKSFLGGNFGTPAV-------- 142

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               +               +  +E SS  L       +        N+  DH+D+H + 
Sbjct: 143 --EALE----------GEYDYYVLEMSSFQLFWSERPYLSNF--LVLNISEDHLDWHSSF 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y ++K++        +           +K + +     G R   + +        +  
Sbjct: 189 EEYVDSKLKPVFLQTEGDLFVY-------NKHIERLKDLEGVRSRKIPFWTDENFATEKE 241

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I   ++ T+                    N L  + L + +  +    LE L     +P
Sbjct: 242 LIVRGKRYTLPGNY----------PYQMRENVLAVSVLYMEMFNELESFLELLRDFKPLP 291

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E++G            A +++++   L N          VV    G   +    +  
Sbjct: 292 HRMEYLGQIDGRHFYNDSKATSTHAVLGALSNFDK-------VVLIMCGIGKKENYSLFV 344

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDV 461
           + A       I            +I  E+   +         N  EA   A+E+  K DV
Sbjct: 345 EKASPKLKHLI---------MFGEISKELAPFVGKIPHSIVENMEEAFEKAMEVSEKGDV 395

Query: 462 LVV 464
           +++
Sbjct: 396 ILL 398


>gi|308271441|emb|CBX28049.1| UDP-N-acetylmuramate--L-alanine ligase [uncultured Desulfobacterium
           sp.]
          Length = 459

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 100/271 (36%), Gaps = 15/271 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+ ++H+D++    A  +     F + +P    A++  D+ Y ++++ +        
Sbjct: 177 VVTNIDKEHLDFYSNIDAIKDV-FLNFIDRIPFYGLAVLCLDNEYVQDIIPKIKKRFTTY 235

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIG 326
                       K V       +  +   G    +    LPG   VYN+L +  + + + 
Sbjct: 236 GMSSQA--VFQAKNVSIEGLISKFKVCYNGNTLGEISLNLPGIHNVYNSLASIAVGMELD 293

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I   ++ E LE +  V  R E  G   RG  +  DY H    +   L+  +     R ++
Sbjct: 294 IPFDIIKEALENMQGVQRRLEIKG-EVRGITVVDDYGHHPTEIRTTLQAAKDCWPDRRVI 352

Query: 387 VFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIH-GIP 437
           V        + K       + A   +D  I+    P  E      D + +  EI   G  
Sbjct: 353 VVFQPHRYSRTKALFDDFTR-AFYQSDHLIILPIYPAGEKEIEGIDSKFLCEEIAAHGHK 411

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   +   A+    + LNK D+L+  G G
Sbjct: 412 EAVYMNDMESAVEYLKDKLNKNDILLTLGAG 442


>gi|30248927|ref|NP_840997.1| cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
 gi|30138544|emb|CAD84834.1| Cyanophycin synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 856

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 126/372 (33%), Gaps = 29/372 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++    +  + + + L             F     + T        A + L
Sbjct: 472 IAVTGTNGKTTTVRLIANMLENNRLRVGIACTDGV---FVNGQCVDTGDCSGPQSARNIL 528

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQAYFNAKMRLF 234
               V    +E +  G+ +  L          TN+GR          T +     K  + 
Sbjct: 529 FHPEVDAAVLETARGGILREGLGFDYCDVAVVTNIGRGDHLGLANINTAEELAAVKRTIV 588

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCA 284
           E + PK   A++ ADD     +                            + I+++    
Sbjct: 589 ENVNPKTGVAVLNADDPLVLGMASHCPGNVTFFSRNHRHPVILEQRVQGKRVIYMEDHHI 648

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----H 340
           I  +      +              FQ+ NA+ + G  +AI +D   +   L        
Sbjct: 649 IVAEAGTERRISLSQIRLTKNGMISFQIDNAMASIGAGLAIELDWTTICAGLADFVSDAQ 708

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGRF     N R   +  DY H  +++E ++  I  I + +  VV    GDR      
Sbjct: 709 TVPGRFNL--FNYREATLIADYGHNPDAMEALVCAIDHIPAKKRTVVISAAGDRRNEDIR 766

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAI 453
           +  +I  D+ D  ++  D   R     ++   +  G+          E     +AI TA+
Sbjct: 767 LQTRILGDVFDEVVLFQDKCQRGRADGEVLGLLREGLENAKRVRKVSEIRGEFKAIDTAL 826

Query: 454 EMLNKQDVLVVA 465
             L   ++ ++ 
Sbjct: 827 TNLEAGELCLIL 838


>gi|294142806|ref|YP_003558784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
 gi|293329275|dbj|BAJ04006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
          Length = 451

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 132/398 (33%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S   ++         +  I V+ +      LFA  +  + P  ++ +TG++GKS
Sbjct: 69  ASQIVISPGIAIDTPEIRAAIDMDIEVIGDVE----LFARAIKDRSP-CVIGITGSNGKS 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +GL+    G                  P+ L                +
Sbjct: 124 TVTTLVGEMAKAAGLNYAVGGNIGIPVLDLLQK------PVDL--------------YIL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   +AY  AK+ L+             
Sbjct: 164 ELSSFQLET--THSLNCISATCLNISEDHMDRYSDLEAYRQAKLALY------------- 208

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D   + +  R  +       +      +          K    +    +         
Sbjct: 209 --DQSKRALFNREDSLTQPNDPMNQNSFGLTSPVNDEWGVKDGKIVHGTTEIASLQDVAI 266

Query: 308 GEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                +  L  A  L    GID   +++  +    +  R E V   +    +    A   
Sbjct: 267 VGSHNHANLIAAMALAYHAGIDKEPMIQVAKNFTGLAHRCELVANIAAVAYVNDSKATNV 326

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L+ +     G II++ G  G +     P+   +   +A +  +  D        
Sbjct: 327 GATVAALEGLGEHL-GDIILIVGGDG-KGADFTPLET-VFNKVAHLITLGKDG------- 376

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +I        +  +  +A++ A E+    D++++
Sbjct: 377 ---DKIAALKEHSHKADSMADAVKQAAELATAGDIVLL 411


>gi|78484929|ref|YP_390854.1| UDP-N-acetylmuramate--alanine ligase [Thiomicrospira crunogena
           XCL-2]
 gi|109892753|sp|Q31I43|MURC_THICR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78363215|gb|ABB41180.1| UDP-N-acetylmuramate--L-alanine ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 461

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 127/368 (34%), Gaps = 45/368 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
            +VVS+A +  +           P++     R   L+      +G      +A+ GT GK
Sbjct: 67  VVVVSTAIAKDNPEVCFAKESRIPVI----PRAAMLAELMRMRFG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S    I    G   +F IG    ++ F  + RL +         ++       + +
Sbjct: 117 TTTTSLASAILTEGGLDPTFVIG--GKLNQFDSNARLGSS-----QYLIAEADESDASFL 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH++ +Q   A        F   LP    AI
Sbjct: 170 ---------------HLSPMMSVVTNIDEDHMETYQGDYANLEQTFIEFIHRLPFYGVAI 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   + ++ +      R             + +    +      + +  +F  +  
Sbjct: 215 VCIDDQNIQNMLPKLSR-KIRTYGFSESADIRATEVLHQGLSMHFNVKANDLPEFSVVLN 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDY 362
            PG+  V NAL A  + + + +    + + L     V  RFE   + S G +      DY
Sbjct: 274 QPGKHNVLNALAAITVALELDVSIESIQKALAGFGGVGRRFEVYPSRSIGHKNVTLVDDY 333

Query: 363 AHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDN 419
            H    LE  L   R      R+++VF     R    R +  +   AL  AD+ ++ D  
Sbjct: 334 GHHPTELEATLSTARMAFPEKRLVLVF--QPHRYSRTRDLFDEFVQALQHADLLVLLDVY 391

Query: 420 PRSEDPEK 427
           P  E P  
Sbjct: 392 PAGEAPIA 399


>gi|302874833|ref|YP_003843466.1| FolC bifunctional protein [Clostridium cellulovorans 743B]
 gi|307690547|ref|ZP_07632993.1| FolC bifunctional protein [Clostridium cellulovorans 743B]
 gi|302577690|gb|ADL51702.1| FolC bifunctional protein [Clostridium cellulovorans 743B]
          Length = 430

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRP 400
             GR E +   +      +D AH  +++  + +++ +  +   II++ G   D+      
Sbjct: 297 WKGRMEIM---NNNPITVIDGAHNIDAIIRLKESVEKYFSYKNIILILGILADKQVDN-- 351

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M  +    A   I VT ++ R+E  E +   +         + N  EA+R A E    +
Sbjct: 352 -MVNVIAKDAKKIITVTPNSERAELGEDLLKIVKKVNDNCQYEENYQEALRKAREYAEAE 410

Query: 460 DVLVVAG 466
           D+++++G
Sbjct: 411 DIILISG 417


>gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 458

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 134/396 (33%), Gaps = 42/396 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++VS    L      +     I V+          A R      +NI+A+TGT+GK++ 
Sbjct: 72  LVIVSPGVPLSKRPLVLAHKKGIEVIGEI-----ELAYRFCK--SKNIVAITGTNGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V +I ++        G          +                       T   +E 
Sbjct: 125 TTLVGEILKKQYEDVVVCGNIGLPFIDTIETS------------------SEDTIFVLEI 166

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE +       + Y +
Sbjct: 167 SSFQLET--IKYFKPKVGCILNITPDHLNRHLTMENYTKAKMRIFENIDEMGYTVLNYDN 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +     +     N      +       + ++        +  T  V  KD  F   +PG+
Sbjct: 225 NITRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYFTFEGKTQEVMKKDEIF---IPGQ 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL A    +  GI+   + + L+    V  R EFV   +            +++ 
Sbjct: 282 HNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFVAEINGIKFYNDSKGTNTDAA 341

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L           I++   G D+ +        +         +       +  +KI 
Sbjct: 342 EKALNAFE-----NPIILIAGGYDKGESF-EKFASLVAKKVKKVFL-----LGQTKQKIA 390

Query: 430 AEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +E+   G   F       EA+R + E     D++++
Sbjct: 391 SELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLL 426


>gi|323704370|ref|ZP_08115949.1| FolC bifunctional protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536436|gb|EGB26208.1| FolC bifunctional protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 425

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 123/396 (31%), Gaps = 35/396 (8%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           DN R+ L    +    +     + V GT+GK S  +F+  I   +G              
Sbjct: 23  DNIRRLLEYMGN---PQKKLKFIHVAGTNGKGSTCAFINSILINAGYKVGLYTSPYLEEF 79

Query: 156 FAQDNRLTTPSPIYLAKALSYLSS----------QGVTHVSVEASSHGLDQHRLDGIKLI 205
             +        P                                ++      R + +  +
Sbjct: 80  EERMRINNKNIPKDKLADYVEYVKDVVDRLLADGYHHPTEFELITAIAFKYFRDENVDFV 139

Query: 206 --------AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN+  + +    +   Y +               A I  ++       
Sbjct: 140 VLEVGLGGRFDATNVIDNSLVSVISTIDYDHMDKLGDTLEKIAYEKAGIIKENGIIVSFY 199

Query: 258 KRAHNAGCRVLSVGYQG---KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++             +      + +  V  I +  +  I       +    + G+ Q+YN
Sbjct: 200 QKDEALQVIERVANLKKASLDILDINDVEIIESNSEYQIFNYRDYKNLKICIIGKHQIYN 259

Query: 315 ALVAAGLCI----AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
           A +A              S   +         PGR E +   SR   I +D AH    + 
Sbjct: 260 ASLALMAVEKLRSQGITISEEAIRVGLADAKWPGRIEVL---SRCPFIVIDGAHNPQGMS 316

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           ++ + +   +  R+++V G   D+D  K   M K+ + LADI I T          +  A
Sbjct: 317 VLKEALNLFSYERLVLVIGMLKDKDTDK---MLKLIVPLADIVITTKPVSDRAYTAEELA 373

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E I G+   +   +  +AI  A+   NK+D+++  G
Sbjct: 374 EKIKGV-NPLHFEDIDDAINEALRKANKKDLILFCG 408


>gi|300777756|ref|ZP_07087614.1| cyanophycin synthase (L-arginine-adding) [Chryseobacterium gleum
           ATCC 35910]
 gi|300503266|gb|EFK34406.1| cyanophycin synthase (L-arginine-adding) [Chryseobacterium gleum
           ATCC 35910]
          Length = 876

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 73/214 (34%), Gaps = 14/214 (6%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M   +    +    G          V       ++ I  + KDF         F + N L
Sbjct: 634 MDENNPHIVKFAKEGKITCVYEEGFVTIKKGDWKIRIG-KAKDFPITMEGKARFMIENVL 692

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            A+      G     +   L          PGR           ++ +D+AH  +  E I
Sbjct: 693 AASLASYLYGFGIEDISNSLRTFIPSAQLTPGRLNVFKFK--NFKVLIDFAHNPSGYEAI 750

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAE 431
              ++ + S + I +    GDR        GKIA  + D  I+ ++ + R    ++I   
Sbjct: 751 EDYLKNVESTKKIGIISGVGDRRDNDIRECGKIAGRMFDHIIIRNEKHLRGRTEDEINGL 810

Query: 432 IIHGIP------GFIEKGNRIEAIRTAIEMLNKQ 459
           II G+        +      IEA++ AI M  + 
Sbjct: 811 IIEGMQSAGKDVSYEIIPKEIEALKHAIGMAEEG 844


>gi|322807873|emb|CBZ05448.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum H04402
           065]
          Length = 458

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 126/408 (30%), Gaps = 45/408 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V +A    D    I +    + + +   FL            +  +A++GT GK++  S
Sbjct: 73  IVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGY-----KYNIAISGTHGKTTTTS 127

Query: 132 FVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +  +  + +   +  +G    I +       +        +  S               
Sbjct: 128 MLSHVALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKF---------- 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G+  N+  DH+DY++      NA  +  + +           D 
Sbjct: 178 ------------FPYIGAILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDK 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + + + N     ++ G            A  N     +    K F     +PG+ 
Sbjct: 226 NIQSIIKEASCNVITYGINSGDIQAHNIEYDEKACGNFD--VVKDNQKLFSVKLNVPGKH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N+L +  + +A  +    ++E +E       RFE  G  +    +  DYAH    + 
Sbjct: 284 NILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKN-NITVIDDYAHHPTEIS 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   +     ++  VF      R         K   D AD  I+ D     E D   I
Sbjct: 343 ATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTK-CFDNADEIILADIYAAREKDTGII 401

Query: 429 RAEIIHG--------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++++             F +  +        IE     D+++  G G
Sbjct: 402 SSDMLGDKLRDRGLKCTNFHKFDDIK---NYLIENAKNGDLILTVGAG 446


>gi|149924619|ref|ZP_01912973.1| cyanophycin synthetase [Plesiocystis pacifica SIR-1]
 gi|149814504|gb|EDM74091.1| cyanophycin synthetase [Plesiocystis pacifica SIR-1]
          Length = 957

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 118/396 (29%), Gaps = 39/396 (9%)

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++V+  +  I + SG +              +        P+     L     
Sbjct: 495 VTGTNGKTTVSRMLAHILKMSGKTVGLTTTDGVYIDGERTVSGDMTGPVSARMVLRDP-- 552

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             V    +E +  GL +  L       G+  N+  DH+                   +  
Sbjct: 553 -SVDAAVLETARGGLLRAGLGYRANNVGAVLNVQADHLG-LGGIDTIEQLAAVKRIVVEV 610

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-ISVEGK 298
               A++ ADD    ++           ++   +   +                I+ +  
Sbjct: 611 SRDCAVLNADDEQCLKMADYTKAERIAYVTRNPKHALVREHIRAGGAACVLEEGINGQMI 670

Query: 299 DFDFLFPLPGEFQVY---------------NALVAAGLCIAIGIDSALVL----EHLEKL 339
                         +               NA+ AA +   + +    +           
Sbjct: 671 TLYDRGSHIPLLWTHLIPATLEGKALFNVQNAMFAALMARVMKVKIDNIRVGLRTFDTTF 730

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGK 398
              PGR      +    ++ +DY H   ++  + +   ++  +GR + V    GDR    
Sbjct: 731 FQAPGRLNV--FDDLPFKVILDYGHNPAAVGAMAETAASMEVNGRRLCVLAAPGDRRDED 788

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDPEKIR-----AEIIHGIP--GFIEKGNRIEAIR 450
              + K A    D  IV  DD+ R     ++      A I  G+         +   AI+
Sbjct: 789 IVAIAKQAAPHFDAFIVRRDDSLRGRKVGEVTGILMGALIGAGVSPSKVEVIEDEQAAIQ 848

Query: 451 TAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
            A+E   + D+LV+ G            +     D 
Sbjct: 849 AALERGERGDLLVIFG----DNISRCWKQIVHFNDA 880


>gi|187926156|ref|YP_001892501.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665644|ref|YP_002984003.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727910|gb|ACD29074.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867671|gb|ACS65331.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 855

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 128/372 (34%), Gaps = 30/372 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+GT+GK++    +  +   SGL    +G T T   + Q  R+ T        A + L
Sbjct: 473 VAVSGTNGKTTTVRLITHLLASSGLR---MGMTGTDGVYIQGQRIDTGDCSGPRSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR------------DHIDYHQTQQA 225
               V     E +  GL +  L   +      TN+G             + +   ++   
Sbjct: 530 LHPDVDAAVFETARGGLLREGLAFDRCDVAVVTNVGEGDHLGLNYISTVEDLAVLKSVIV 589

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A   +          A +      S              L      + + +     +
Sbjct: 590 QNVAPRGMAVLNAADPMVARMAEGCPGSVTFFAHDPGLPTLALHRAQGKRVVFVDGPEIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             +      +   D          FQV NA+ +     A+GID  ++   L         
Sbjct: 650 AAEGANETRIALADIPLTRNGTIGFQVENAMSSIAAAWALGIDWTVIRRGLATFVNDAAT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRP 400
            PGRF     + +G  +  DY H  ++++ +   + T+ + R +VV    GD RD+  R 
Sbjct: 710 APGRFNL--FDYKGATLIADYGHNPDAIQALCNAVATMPAQRRMVVISGAGDRRDEDIRK 767

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAI 453
              +I   + D  ++ +D   R     ++ A +  G+          E      AI TA+
Sbjct: 768 Q-TQILGGVFDDVVLYEDQCQRGRADGEVLALLREGLQGASRTSRVDEIRGEFLAIDTAL 826

Query: 454 EMLNKQDVLVVA 465
             L   D+ ++ 
Sbjct: 827 GRLQPGDLCLIL 838


>gi|95930730|ref|ZP_01313463.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133210|gb|EAT14876.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 456

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 134/410 (32%), Gaps = 43/410 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A S  +          + V+    + L+      YG      +AV GT GK+
Sbjct: 65  AQVVVTSTAVSSDNPEVVEAHRLLVPVIPRA-EMLAELMRLKYG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G+    +     +++   + +L     + +    S  S         
Sbjct: 118 TTTSMVATLLSHGGIDPTAV-VGGRLNALGSNAKLGQGEFMVVEADESDGSFLK------ 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  DH+DY+             F   +P    A++ 
Sbjct: 171 --------------LTPTIAVVTNIDEDHLDYYSGMDEIRGV-FLDFINKIPFYGLAVLC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DDA  + ++ +                     +  A   +  V    E K       +P
Sbjct: 216 LDDANIQTLLPQVQKRYVTYGLTPQADFSATEIEHRAGGTEFTVHFRQE-KLGRIRLEMP 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL +  +   + +    + E  E    V  RF+          +  DY H   
Sbjct: 275 GRHNVLNALASLAVARELDVPMKTICEGFESFAGVQRRFQIK--LDDEVMVVDDYGHHPA 332

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP 425
            ++  L   R     R++V+F     R    + +          AD+ +V D    SE P
Sbjct: 333 EIKATLSAARNGWDRRVVVIF--QPHRYSRTQALFDDFVTAFYQADVLLVMDVYAASEAP 390

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                 E +   I       +   N  EA ++  +++L   D+++  G G
Sbjct: 391 IEGVCGEDLAKAIAGHGHRQVTYCNSEEAVVKQVLDVLKPDDIVITLGAG 440


>gi|15676332|ref|NP_273468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis MC58]
 gi|30316129|sp|Q9K0Y4|MURD_NEIMB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|7225643|gb|AAF40858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis MC58]
 gi|316984929|gb|EFV63885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
 gi|325140935|gb|EGC63442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis CU385]
 gi|325199608|gb|ADY95063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
          Length = 445

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 147/418 (35%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +  + L+   
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-ELLADIV 105

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +R        ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 106 NRRDD----KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               ++  +      
Sbjct: 204 AHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQ 258

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             + + ++ +        PL G     N + A  LC AIG+    +LEH++    +P R 
Sbjct: 259 GNEDLIVTQDI-------PLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   + 
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALV 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|157964317|ref|YP_001499141.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia massiliae MTU5]
 gi|167017283|sp|A8F108|MURC_RICM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157844093|gb|ABV84594.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia massiliae MTU5]
          Length = 485

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 63/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYKDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCTDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-----PI 401
             V        I  DYAH    ++  L   + I + +   V          +        
Sbjct: 330 TKVA-EYNKASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
           M   A   ADI  +TD     E+P          +KI     H    F+ + +  +A+  
Sbjct: 389 MLCFAD--ADILYITDIYAAGENPIEGITGQSLVDKITKHKHHDKANFLAELD--DAVGV 444

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I+     D++++ G G+
Sbjct: 445 IIDNAASGDMIIMMGAGN 462


>gi|258654962|ref|YP_003204118.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
 gi|258558187|gb|ACV81129.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
          Length = 914

 Score = 67.2 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 117/386 (30%), Gaps = 43/386 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ +  +  I +  G      G TST      D  +          A   L
Sbjct: 507 VAVTGTNGKTTCSRMIGHIFKSMGRKV---GMTSTDGVVIDDRLVIRSDASGPRSARMVL 563

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--------------------I 217
            +  V     E +  G+ +  L   +       N+  DH                     
Sbjct: 564 QNPRVDFAVFEVARGGILREGLGYPRNDVAVVLNVAPDHLGLRGIDTVEQLAQVKQVIVE 623

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
              ++  A  NA   L   +    S  +++        ++      G + + +       
Sbjct: 624 AVPKSGSAVLNADDPLVAGMRRACSGEVVWFSTEPDNRMISDHCRRGGKAVILERSDLGE 683

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            +  V            +    F        +  +  A  A      +G     +     
Sbjct: 684 LIVLVHGRRRMPLAYTHLVPATFGGKAMFNVQNAMAAAAAAYCAGAHLGDIRGGLRSFTP 743

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-------SGRIIVVFGC 390
             +  PGR        RG ++ VDY H + ++  +   +             + I V   
Sbjct: 744 SYYSAPGRMNLT--EVRGVKVIVDYCHNAPAMVALGAFVDRFFEDSASWERPQRIGVIAT 801

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHG----------IPGF 439
            GDR       +G  A    D  IV +D   R   P +    I+ G          +   
Sbjct: 802 AGDRRDQDMIDLGLEAAKHFDRIIVREDERLRGRAPGETAGLIVQGAKEAQAQGGRVKQI 861

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVA 465
               + IEA + A+E  N  D+++V 
Sbjct: 862 EVVLDEIEATKVAVEWANPGDLVLVC 887


>gi|148378126|ref|YP_001252667.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153932484|ref|YP_001382527.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935877|ref|YP_001386079.1| cyanophycin synthetase [Clostridium botulinum A str. Hall]
 gi|148287610|emb|CAL81675.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152928528|gb|ABS34028.1| cyanophycin synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152931791|gb|ABS37290.1| cyanophycin synthase (L-aspartate-adding) [Clostridium botulinum A
           str. Hall]
          Length = 873

 Score = 67.2 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F   N  G  + +DY H     +++L++I+ I   RII V G  GDR       +G I  
Sbjct: 720 FNMYNVHGTNVILDYGHNIEGYKVVLESIKKIKHKRIIGVVGVPGDRTNSSTLKVGNICG 779

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQ 459
           +  D   + +D + R     +I   +  GI              +  EA++ AIE  N  
Sbjct: 780 ENFDYVYIKEDRDKRGRKHGEIADLLKKGILETGFKNSKLNIILDEEEALKKAIEFSNPG 839

Query: 460 DVLV 463
           D+++
Sbjct: 840 DLVI 843


>gi|328478046|gb|EGF47933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus MTCC 5462]
          Length = 462

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 129/415 (31%), Gaps = 40/415 (9%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIF---VA-IVGNKEDG 56
           M L ++      + +++     +         V+ DSR ++ G +    VA + G     
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVA------TGVAFDSRRLKPGMLLSHCVASVTGTSLFQ 56

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPE 115
                  + +G   ++             + +  P LVV +    +   A      K   
Sbjct: 57  RR-----LLRGQSQLLWQR------TICQMTTKLPTLVVPDPLAAMQKLAQYYLLMKVNP 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+TG++GK++       I            P +  +       + +  P        
Sbjct: 106 KVVAITGSNGKTTTKDMTAAILATQYHVVKT--PDNYNNEIGVPMTILSMEPNT------ 157

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 V  + +     G   H L  +     +   +  +        +A          
Sbjct: 158 -----EVLVLEMGMDRPG-QLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEIT 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + L ++   I   D+     ++ RA        + G   +        + H         
Sbjct: 212 DGLKEDGTFIFNGDEP---LLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFTVE 268

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +  +  F  P+ GE+ V NAL A  +     +    + + L    V   R +++  +   
Sbjct: 269 QWPELTFSIPIMGEYNVVNALAALLVGRRFHVKPEAMQKALAHFQVTANRTQWLIGDVGE 328

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +   Y     +++ ++ +     + GR I V G   +  +  R +   +A  L
Sbjct: 329 QILSDVYNANPTAMKAVIHDFSEFQTAGRHIAVLGDMLELGEQSRTLHAGLADAL 383


>gi|304386680|ref|ZP_07368961.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
 gi|304339233|gb|EFM05312.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
          Length = 469

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+ ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DVLVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|83942754|ref|ZP_00955215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
 gi|83846847|gb|EAP84723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 122/407 (29%), Gaps = 67/407 (16%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQ 134
           Y   +       +  + V ++   F   FA+  +        I+A+TG++GKS+ ++ V 
Sbjct: 80  YPAPNPVIVAAQDAGVPVDNDIGLFFQSFATLAWDNFDVVPKIIAITGSNGKSTTSALVH 139

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I + +G  +   G         +         + L                   SS+  
Sbjct: 140 HILKHAGRPTQLAGNIGRGVLDIEPAIDGEVVVLEL-------------------SSYQT 180

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           D  R   +      FTNL  DH+D H     YF AK RLF E  P  +       D    
Sbjct: 181 DLAR--NLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVI---GVDEPEG 235

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------DFDFLFPLP 307
             +    + G     V        L  +      ++  +S           D   +  LP
Sbjct: 236 RFLAGQLSEGAADDRVIRVSVDRKLTGLGWQVFARKGFLSEYRGGKQIGSIDLRSITGLP 295

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA  A   C  +G    ++         +P R + VG       +    A   +
Sbjct: 296 GAHNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQTVGEAGGVRFVNDSKATNVD 355

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQG---------KRPIMGKIALDLADIAIVTDD 418
           S    L   R I   R I                     K  ++G+ A   A        
Sbjct: 356 SAVKALAAFRNI---RWICGGLEKEGGLGSLSEPLETVRKAYVIGREAAQFA-------- 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                        +  G+      G    A+  A+E     DV+++A
Sbjct: 405 -------------MKLGVE-AEVCGTMDIAVARAVEDAEAGDVVLLA 437


>gi|239813927|ref|YP_002942837.1| UDP-N-acetylmuramate--L-alanine ligase [Variovorax paradoxus S110]
 gi|259509785|sp|C5CNF5|MURC_VARPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239800504|gb|ACS17571.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus S110]
          Length = 485

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 140/436 (32%), Gaps = 62/436 (14%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A A   GA+A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAAHIDGADAVVTSTAVQSDNPEVLAAREKRIPVVPRAL-MLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +   +G   +F IG    ++S   + +L +   I +    S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLDAAGLDPTFVIG--GRLNSAGANAQLGSGDYIVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH++ +    A        F 
Sbjct: 165 DASFLN--------------------LLPVMAVVTNIDADHMETYGHDFAKLKKAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI+  DD   ++++                   +    V A+  +   T   
Sbjct: 205 HRMPFYGVAILCTDDPAVRDIVAEVTCPVTSYGFGEEA--QVRAIDVRAVGGQMHFTAQR 262

Query: 296 EGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  D   +  LPGE  V NAL    + + +GI    V   L     V  RF+  G 
Sbjct: 263 RNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGE 322

Query: 352 ------NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR---PIM 402
                  +    +  DY H    +   +   R    GR  +V      R    R      
Sbjct: 323 VAAQGEPAGSFTVIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDF 381

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGN---RIEAIRTA 452
            K+  + AD  ++ +     E P        +   +   G    +   +     +AI   
Sbjct: 382 VKVIGN-ADAVLLGEVYAAGEPPIVAADGRTLARALRVAGKVEPVFVDDIGAMPQAI--- 437

Query: 453 IEMLNKQDVLVVAGKG 468
           ++     DV++  G G
Sbjct: 438 LDNARAGDVVLCMGAG 453


>gi|332829615|gb|EGK02261.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 444

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 115/365 (31%), Gaps = 45/365 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAKRYT---TAKMICITGSNGKTTTTSLIYHILKSAGLNVGLGGNIGRS---------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++ +   +  +E SS  L+   +   K       N+  DH+D +   
Sbjct: 141 ---------FARQVAEENYDYYVLELSSFQLE--NMYSFKADIAILLNITPDHLDRYDHD 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   +    I + +D    + +K+  + G +            +    
Sbjct: 190 IQKYIDAKMRIVQNQTEADAFIFWEEDPIVSKEIKKLVSKGKQYTFAE-----HKVGNAI 244

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPG---EFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           A  N  ++ I+     F     L        +YN+L +      + I    +   L    
Sbjct: 245 AYLNDHEIDINTPNSAFIMEQDLLALEGTHNLYNSLASGIAAKLLDITDDNLRHSLSDFQ 304

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R E V        I    A   NS    L+++      +  VV   GG        
Sbjct: 305 GVEHRLEKVAKVKGIQFINDSKATNVNSCWYALQSM------KTKVVLILGGTDKGNDYT 358

Query: 401 IMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            + ++  D A  +  +  DN +              +    +  +  EA+  +  +  + 
Sbjct: 359 EIEQLVKDKARALVFLGVDNSKLHKFFD------GKVKNIADASSMKEAVEKSYALAEEG 412

Query: 460 DVLVV 464
           D +++
Sbjct: 413 DTVLL 417


>gi|282902044|ref|ZP_06309942.1| UDP-N-acetylmuramate--alanine ligase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193131|gb|EFA68130.1| UDP-N-acetylmuramate--alanine ligase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 489

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 129/410 (31%), Gaps = 50/410 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A +    PIL   +    L   A         + +AV GT GK++
Sbjct: 99  VICSTAINNNNLEYRAALELGCPILHRSDVLAAL--IADY-------HSIAVAGTHGKTT 149

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    +     ++++  + RL                          
Sbjct: 150 TSSMIGYMLLEAGLDPTIV-VGGEVNAWEGNARLGE--------------------SKYL 188

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L       G  TN+  DH D++ T +                        
Sbjct: 189 VAEADESDGSLVKHTPAIGIITNIELDHPDHYATLEQVVETFQTFARGCQVVVGSI---- 244

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLP 307
                 ++++     G        QG    +  +    +     +  +GK        L 
Sbjct: 245 ----DCDIVRDRLKPGISYSLDPDQGADYTVTNIDYRPDGTTALVWEKGKSLGVLNLQLL 300

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +  ++ ++   + + L        RFEF G    G     DYAH  +
Sbjct: 301 GLHNLSNALAAVAVGRSLNLEFGQIAKGLTTFEGARRRFEFKG-EVDGITFIDDYAHHPS 359

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP 425
            +   L   R        VV      R    R  + + A     AD+ ++TD     E  
Sbjct: 360 EIRATLAAARLQAKPGQRVVGIFQPHRYSRVRTFLDEFANCFTHADLVVLTDIYSAGEPS 419

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 EK+ AEI    P  I + +        +  L   D+ V  G G+
Sbjct: 420 CEQVTGEKLAAEIAKRHPQVIYQPSLALIPPVLLSTLRPGDLAVFLGAGN 469


>gi|225619257|ref|YP_002720483.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
 gi|254765984|sp|C0QXF2|MURC_BRAHW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225214076|gb|ACN82810.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
          Length = 462

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 151/422 (35%), Gaps = 39/422 (9%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q I     A+V SSA S  +       +   + V +  + L+      YG    
Sbjct: 57  GHK--AQNIEDDVTAVVTSSAISPTNEEIIEAKSKK-ITVISRGEMLAELMRLRYG---- 109

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A++G+ GK++  S + QI   +GL+   I   +  +  +                 +
Sbjct: 110 --IAISGSHGKTTTTSLISQIMMHAGLNPVCIIGGNHFNLKSN----------------A 151

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +     ++  EA        R   +  +    TN+  DH+DY+   +A   A    F 
Sbjct: 152 ACNDLSSEYMVCEADESDGSFLR---LSPVINVVTNIDNDHLDYYGNVEALRVA-FLEFI 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    + +  +D   K++ K A+              ++    +         T   
Sbjct: 208 NKVPFYGCSFLCFEDNVVKDLSKSANKKYYSYGFSKDYDFYVDRDSIRVEAPITYFTAYH 267

Query: 296 EGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             +   +F  PL G   V N+L + G+ I +GID A + E L+    V  R        +
Sbjct: 268 NSECLGEFSVPLIGIHNVLNSLASIGVGIHLGIDIADIKEGLKTFEGVGRRL--NKLYDK 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIA 413
              ++ DYAH    ++  L ++R     R I+         + +  +   + A + AD  
Sbjct: 326 EITLFDDYAHHPTEIKATLSSVRNAYKNRRIIAVFQPHRYSRTELLLNDFEYAFNDADEV 385

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           I++D     E P      E I   +           N  + +    ++    D+++  G 
Sbjct: 386 IISDIYAAGESPIPGISGEIICDVVRKQNNHVRYIPNIEDVLPVLDDIKKDGDIILTLGA 445

Query: 468 GH 469
           G+
Sbjct: 446 GN 447


>gi|53720634|ref|YP_109620.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76808578|ref|YP_334914.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126441898|ref|YP_001060534.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126454974|ref|YP_001067785.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134280221|ref|ZP_01766932.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|167721339|ref|ZP_02404575.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           DM98]
 gi|167896002|ref|ZP_02483404.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           7894]
 gi|167904389|ref|ZP_02491594.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           NCTC 13177]
 gi|217425709|ref|ZP_03457199.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|226199600|ref|ZP_03795156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813918|ref|YP_002898369.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242315936|ref|ZP_04814952.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254180547|ref|ZP_04887145.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|254191011|ref|ZP_04897517.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199124|ref|ZP_04905539.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|254260254|ref|ZP_04951308.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
 gi|254299365|ref|ZP_04966815.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|59798176|sp|Q63QJ8|MURC_BURPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892695|sp|Q3JND9|MURC_BURP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222966|sp|A3NZL4|MURC_BURP0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222967|sp|A3NDW3|MURC_BURP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52211048|emb|CAH37036.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76578031|gb|ABA47506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126221391|gb|ABN84897.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126228616|gb|ABN92156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134248228|gb|EBA48311.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|157809030|gb|EDO86200.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|157938685|gb|EDO94355.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656954|gb|EDS88351.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|184211086|gb|EDU08129.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|217391297|gb|EEC31329.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|225928346|gb|EEH24377.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505140|gb|ACQ97458.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242139175|gb|EES25577.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254218943|gb|EET08327.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
          Length = 465

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 144/429 (33%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVP--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DDA  ++++        R          +  + V A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCIDDANVRQIVPLISKPVVRYGF--AADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G  
Sbjct: 261 RREGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 353 SRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +        +  DY H    +   +   R    GR  +V      R    R         
Sbjct: 321 AAAGGGAYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNV 379

Query: 409 LA--DIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           L+  D  ++T+     E P      + +   +   G    +      E      ++    
Sbjct: 380 LSTVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|255264765|ref|ZP_05344107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
 gi|255107100|gb|EET49774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
          Length = 468

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 135/418 (32%), Gaps = 64/418 (15%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           G  A++VS      Y   + +        + V ++   F   +A+  + +      ++AV
Sbjct: 66  GVSALIVSPGIPHLYPEPNKTIAAAWAAGVPVDNDIGLFFRSYATGDWDRFDVAPQVVAV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  I    G  +   G                   + L          
Sbjct: 126 TGSNGKSTTSALIHHILTEVGRPTQLAGNIGRGVLDIDPAIDGEVVVLEL---------- 175

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                    SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P+
Sbjct: 176 ---------SSYQTDLAR--SLTPDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPE 224

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVG----YQGKFIHLKKVCAIHNKQQVTISVE 296
            +   +   +               R++ +      QG   ++       ++ +      
Sbjct: 225 RAVIGVDEVEGQYLSNQMMDGMDPSRIIQISVDRKLQGPGWNIFARKGFLSEYRNGRQAG 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A   C ++G+   ++ + L     +P R + +       
Sbjct: 285 SIDLRDIIGLPGAHNHQNACAAYAACRSLGLAPKVIEQALHSFGGLPHRSQQIADQDGVR 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV-----FGCGGDRDQ----GKRPIMGKIAL 407
            +    A   +S    L   + I   R I        G  G +DQ     K  ++G+ A 
Sbjct: 345 YVNDSKATNVDSAAKALAAFKNI---RWICGGLEKEGGLTGLKDQLGAVRKAYVIGREAA 401

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             A                      + G+          EA+  A +     D +++A
Sbjct: 402 SFARQ--------------------LEGVE-TQICTTIQEAVAAAYQDAEAGDTVLLA 438


>gi|187930156|ref|YP_001900643.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12J]
 gi|229620425|sp|B2UCX6|MURC_RALPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187727046|gb|ACD28211.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12J]
          Length = 483

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 134/429 (31%), Gaps = 66/429 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F + LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGHF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALDLA 410
            +  DY H    +   L   R     R +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATLAAARGAFPDRRLVLSFQPHRFTRTRDCFEDFVKVLGTV----- 388

Query: 411 DIAIVTDDNPRSEDPEKIRAE---------IIHGIPGFIE--KGNRIEAIRTAIEMLNKQ 459
           D  ++ +     E P  I A+         + + I         +  +AI  A       
Sbjct: 389 DALLLAEVYAAGEPPI-IAADGRALTRALRVANKIEPVFVEQIEDMPQAILDA---AQDG 444

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 445 DVVITMGAG 453


>gi|220927591|ref|YP_002504500.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
 gi|219997919|gb|ACL74520.1| cyanophycin synthetase [Clostridium cellulolyticum H10]
          Length = 893

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 14/176 (7%)

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV----VPGRFEFVGTNSR 354
           D    F    +  + N+L A    I + I   ++++ +          PGRF      + 
Sbjct: 674 DIPITFGGIVDCNIENSLAAISALIGLNIPLDIIIKGMSTFQPDTQLNPGRFNIFDMGTF 733

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              + +DY+H       ++K ++ + + R++ + G  GDR       +G++         
Sbjct: 734 K--VMIDYSHNIAGYSAVVKFMQKVKAKRLVGIIGMPGDRQDSNFKEVGELCAKSFHRIY 791

Query: 415 VTDD----NPRSEDPEKIRAE--IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVL 462
           + +D      R  +   I  +  I  G          +  EA+  A+      D++
Sbjct: 792 IKEDIDLRGRRRGEVANIFEQSMINAGAKRENIEIIYSETEALEKAMLDAQPGDLI 847


>gi|329122143|ref|ZP_08250751.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
 gi|327466950|gb|EGF12466.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
          Length = 463

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 138/429 (32%), Gaps = 55/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   PQ I   A+ ++VS+A S  +       +   P+    +        A+ L G  
Sbjct: 57  GHN--PQNIKN-ADVLIVSTAISKNNSEVLEAKKHKIPVFHRSDL------LAAILCG-- 105

Query: 114 PENILAVTGTSGKSSV-ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               + V G  GKS+  A   +  C      +  +G    +     ++       +    
Sbjct: 106 -GKSICVAGAHGKSTTSAMIGKVFCDAEKHPTVVLG--GKVDYLNGNSIFGNGEFVIAEA 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S  S                               TN+  DH+D++ T +   NA ++
Sbjct: 163 DESDGSFLKFN--------------------PFISVITNIEDDHLDHYLTVENIKNAFIK 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +        I+  D+   K ++ +               ++  + K           
Sbjct: 203 FINQTDKINGNTILCIDNEGVKSILPKLDENSYITYGTSDNAEYKAINKRYIDSYMMFDV 262

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E         +PG   V NAL A    +  GID   +++ L + + V  RF+   + 
Sbjct: 263 YHKESFLGTVSLMIPGTHNVRNALAALVTGLICGIDFKTIVKSLMEFNGVKRRFQIKYSG 322

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLAD 411
                I  DYAH    +   LK  +     R+I  F      R    +      A D AD
Sbjct: 323 EVK--IVDDYAHHPTEIMSTLKAAKECGKHRVICAFQPHRYSRTNLLKYEFAN-AFDNAD 379

Query: 412 IAIVTDDNPRSEDP-EKIRAEII----------HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           I  +TD     E P   I  +++            I       +  EAI+     + K D
Sbjct: 380 IIFITDIYSAGEKPINGISGKMLVDLIKEKHPTKTITYIKNMEDLPEAIK---NEMQKDD 436

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 437 MIITMGAGN 445


>gi|150389213|ref|YP_001319262.1| FolC bifunctional protein [Alkaliphilus metalliredigens QYMF]
 gi|149949075|gb|ABR47603.1| FolC bifunctional protein [Alkaliphilus metalliredigens QYMF]
          Length = 439

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 8/164 (4%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                       +           S   +         PGR E V        + +D AH
Sbjct: 259 HQIENCCTALTAIDILKEHHDIEVSDESIYQGILETRWPGRMEVVQDEPT---VIIDGAH 315

Query: 365 TSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRS 422
                + +   ++ + SGR I  V G   D++           + L DI I T  N PRS
Sbjct: 316 NLQGGQALANTLKQLLSGRRITFVMGMLEDKEVDG---FLNELIPLVDIVIATTPNSPRS 372

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  ++         +    +AI   + +  K DVL+ AG
Sbjct: 373 MPANVLAGKMDVFKKPIHVEAEVRKAIEKGLALTGKDDVLLFAG 416


>gi|157092738|gb|ABV22542.1| truncated cyanophycin synthetase [synthetic construct]
          Length = 849

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH   S E +   +R  TSG+ I V G  GDR      
Sbjct: 725 QTPGRMNL--FNLGNYHALVDYAHNPASYEAVGAFVRNWTSGQRIGVVGGPGDRRDEDFV 782

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAI 453
            +GK+A ++ D  IV +D+     PR    E I   I    P   +    +  +AI   +
Sbjct: 783 TLGKLAAEIFDYIIVKEDDDTRGRPRGSASELITKGITQVKPDARYESILDETQAINKGL 842

Query: 454 EMLNKQ 459
           +M    
Sbjct: 843 DMAPAN 848


>gi|284047777|ref|YP_003398116.1| FolC bifunctional protein [Acidaminococcus fermentans DSM 20731]
 gi|283951998|gb|ADB46801.1| FolC bifunctional protein [Acidaminococcus fermentans DSM 20731]
          Length = 426

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVV 387
               +         PGR E      R   I +D AH  + + ++ K +     G R I V
Sbjct: 280 DEAAMLRGMDAARWPGRLER---IHRNPDIILDGAHNPSGVTVLRKALDEYYPGARRIYV 336

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIA--IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           FG   D+D      + +I     D    ++  +  RSE PEK+   +       +     
Sbjct: 337 FGMMADKDVS---QVSEILFRPEDTIYTVLAHEGDRSEKPEKLARRL---HKNAVPMDEL 390

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A R A++    +DV++V G
Sbjct: 391 AAAYRRAVQEAGPEDVVIVCG 411


>gi|226951004|ref|YP_002806095.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
 gi|254765991|sp|C1FNF4|MURC_CLOBJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226844146|gb|ACO86812.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 458

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 125/408 (30%), Gaps = 45/408 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V +A    D    I +    + + +   FL            +  +A++GT GK++  S
Sbjct: 73  IVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGY-----KYNIAISGTHGKTTTTS 127

Query: 132 FVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +  +  + +   +  +G    I +       +        +  S               
Sbjct: 128 MLSHVALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKF---------- 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G+  N+  DH+DY++      NA  +  + +           D 
Sbjct: 178 ------------FPYIGAILNIDADHLDYYRDLNDIKNAFSKFIKLIPKDGYLVAYGEDK 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + +   N     ++ G            A  N     +    K F     +PG+ 
Sbjct: 226 NIQSIIKEANCNVITYGINSGDIQAHNIEYDEKACGNFD--VVKDNQKLFSVKLNVPGKH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N+L +  + +A  +    ++E +E       RFE  G  +    +  DYAH    + 
Sbjct: 284 NILNSLASICIGLASNMKCKDIIEGIESFFGTHRRFELKGCKN-NITVIDDYAHHPTEIS 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   +     ++  VF      R         K   D AD  I+ D     E D   I
Sbjct: 343 ATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTK-CFDNADEIILADIYAAREKDTGII 401

Query: 429 RAEIIHG--------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++++             F +  +        IE     D+++  G G
Sbjct: 402 SSDMLGDKLRDRGLKCTNFHKFDDIK---NYLIENAKDGDLILTVGAG 446


>gi|254495666|ref|ZP_05108586.1| cyanophycin synthetase [Legionella drancourtii LLAP12]
 gi|254355117|gb|EET13732.1| cyanophycin synthetase [Legionella drancourtii LLAP12]
          Length = 855

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 107/368 (29%), Gaps = 23/368 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++V   +  + ++   ++          +     R     P      L   
Sbjct: 461 VAVTGTNGKTTVVRLISHLARQVNYTTGTTTTEGIYINNNMICRGDCSGPGSAEVVLHAP 520

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V    +E +  G+ +  L   +      TN+  DH+           A+++     
Sbjct: 521 ---EVDFAVLECARGGILRSGLGFDECDISIITNITVDHLGLGDIHTLEEMAEVKAVVAR 577

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-----------CAIH 286
             K++   I   D      ++        + S+    +      +             I 
Sbjct: 578 STKKTGYAILNADDNLTYNLRHDLQCNIALFSMFESPRIRKHCNLGGLTAYIDKGYVVIQ 637

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +     +  +    F       + N L A             + E L   +  P   
Sbjct: 638 QGARRHHIAKINEIPISFQGAATCMILNVLPAVLAGFISNFSIDKIKEALLNFYPTPENL 697

Query: 347 --EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
                        + +DYAH   +   I   + TI     I + G  GDR       +G 
Sbjct: 698 PGRMNLFKFPKCDVMIDYAHNEGAFCEIKNYLDTIECDTKIGIIGVAGDRRDEDIEKLGY 757

Query: 405 IALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLN 457
            +  + D  I+  D + R      I   +  GI      P      +   AI + +   N
Sbjct: 758 YSASMFDEIIIRHDKDGRGRSNNDITKHLRAGIARSGLTPEVNIISDEFAAIESVLARAN 817

Query: 458 KQDVLVVA 465
               +  A
Sbjct: 818 ADTFVFCA 825


>gi|294012777|ref|YP_003546237.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
 gi|292676107|dbj|BAI97625.1| UDP-N-acetylmuramate-alanine ligase [Sphingobium japonicum UT26S]
          Length = 473

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 92/436 (21%), Positives = 154/436 (35%), Gaps = 63/436 (14%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGK 112
           GH     A   G A  +V S+A    +    +      P++        L          
Sbjct: 59  GHK----AENLGDAAVVVTSTAIKKGNPEVDLALERRVPVIRRAEMLAELMRL------- 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL          
Sbjct: 108 --KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVI-NGGIINSYGSNARLGNSE------ 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VEA        RLDG        TN+  +H+D++ +     +A   
Sbjct: 159 -----------WMVVEADESDGSFLRLDGTL---AVVTNIDPEHLDHYGSFDKVKDA-FV 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-----IHLKKVCAIHN 287
            F E +P    A++  D    + ++ R  +          Q          +        
Sbjct: 204 EFVENVPFYGAAMLCLDHPEVQAILPRVQDRRIVTYGFSAQADIRGENVQPIPGGNRFDV 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +       +      P+PG   V NA+ A G+ + +GID A +     K   V  RF 
Sbjct: 264 QIRERDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATIQTGFAKFGGVKRRFT 323

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            VG  + GG    +  DY H    ++ +L   R    GR+I V      R    R +M +
Sbjct: 324 KVGEIAVGGGSATVIDDYGHHPVEIKAVLAAAREGAKGRVIAVV--QPHRFTRLRDLMDE 381

Query: 405 I--ALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIPGFIEKGNRIEA-IRTAIEML--- 456
              A + ADI       P  E P +    AE++ G+     +G+R  A +  A ++    
Sbjct: 382 FQQAFNDADIVYAAPVYPAGEQPIEGVDSAELVAGLKR---RGHRNAATVEGADDLARLI 438

Query: 457 ----NKQDVLVVAGKG 468
                  D+++  G G
Sbjct: 439 AADVQADDMIICLGAG 454


>gi|168181017|ref|ZP_02615681.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
 gi|182668137|gb|EDT80116.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
          Length = 458

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 125/408 (30%), Gaps = 45/408 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V +A    D    I +    + + +   FL            +  +A++GT GK++  S
Sbjct: 73  IVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGY-----KYNIAISGTHGKTTTTS 127

Query: 132 FVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +  +  + +   +  +G    I +       +        +  S               
Sbjct: 128 MLSHVALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKF---------- 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G+  N+  DH+DY++      NA  +  + +           D 
Sbjct: 178 ------------FPYIGAILNIDADHLDYYRDLNDIKNAFSKFIKLIPKDGYLVAYGEDK 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + +   N     ++ G            A  N     +    K F     +PG+ 
Sbjct: 226 NIQSIIKEANCNVITYGINSGDIQAHNIEYDEKACGNFD--VVKDNQKLFSVKLNVPGKH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N+L +  + +A  +    ++E +E       RFE  G  +    +  DYAH    + 
Sbjct: 284 NILNSLASICIGLASNMKCKDIIEGIESFFGTHRRFELKGCKN-NITVIDDYAHHPTEIS 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   +     ++  VF      R         K   D AD  I+ D     E D   I
Sbjct: 343 ATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTK-CFDNADEIILADIYAAREKDTGII 401

Query: 429 RAEIIHG--------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++++             F +  +        IE     D+++  G G
Sbjct: 402 SSDMLGDKLRDRGLKCTNFHKFDDIK---NYLIENAKDGDLILTVGAG 446


>gi|21910712|ref|NP_664980.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS315]
 gi|28895598|ref|NP_801948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes SSI-1]
 gi|94990778|ref|YP_598878.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10270]
 gi|47606755|sp|Q879A1|MURD_STRP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76363881|sp|P0C0D7|MURD_STRPY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595695|sp|Q1JG10|MURD_STRPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3090871|gb|AAC38404.1| uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate ligase
           [Streptococcus pyogenes]
 gi|21904915|gb|AAM79783.1| putative uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate
           ligase [Streptococcus pyogenes MGAS315]
 gi|28810847|dbj|BAC63781.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptococcus pyogenes SSI-1]
 gi|94544286|gb|ABF34334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10270]
          Length = 452

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 133/417 (31%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D         P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDEDFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 108 FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 155

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 156 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 205 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTQATVIPFSTQKVVDGAYLKDGILY--- 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 261 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 316 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 372 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|218290830|ref|ZP_03494899.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239188|gb|EED06389.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 463

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 87/424 (20%), Positives = 150/424 (35%), Gaps = 48/424 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   P+ +  GA+ +V S+A    +    A    N P++     R  +   A  +  + 
Sbjct: 55  GHR--PEHVE-GADIVVHSTAVKQDNVELQAARALNIPVIH----RSEM--LARLMDDR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AVTG  GK++  S +    +++GL    I     + +   DN      P  +A+A
Sbjct: 105 --VGIAVTGAHGKTTTTSMIAFTMEQNGLDPTFI--VGGVVADLGDNAKAGKGPFVVAEA 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                            S G   H    I       TN+  DH++++  +          
Sbjct: 161 D---------------ESDGSFLHYRPAI----AVVTNVEPDHLEHYDGKFENLVRAYET 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P E   ++ ADD   +E+   A                    ++    ++  V +
Sbjct: 202 FIRQIPSEGLLVMSADDDKLRELRSAARCRVVTYGFAEDADITARHVELGDRASRSDVLV 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + E         LPG+  V NAL A  +C+ +G+        L + H    RF+ V    
Sbjct: 262 NGEF-VGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVVA-EM 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
            G  I  DYAH    +   +   ++ T  RI+ VF      R         K   + AD 
Sbjct: 320 GGVLIVDDYAHHPTEIRATIAAAKS-TGRRIVAVFQPQRYTRTFFLFEEFAKAFGE-ADE 377

Query: 413 AIVTDD-NPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+ D  +P  E         ++ +EI     P         + I    + +   D+++ 
Sbjct: 378 VILCDIYSPAGERKIDGVSAARLASEIARMSNPHTRYIPTHDDVIEYLAQNVRPGDLVLT 437

Query: 465 AGKG 468
            G G
Sbjct: 438 MGAG 441


>gi|282857260|ref|ZP_06266500.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
 gi|282584910|gb|EFB90238.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
          Length = 476

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 130/400 (32%), Gaps = 44/400 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S  + +   R   P+L        L            +N + V GT GK++  S +  
Sbjct: 83  PASNPELAEARRKEIPVLQRAELLSLLFD---------SKNGIGVAGTHGKTTTTSLISY 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I +++ +          +     + +L                        ++ S    +
Sbjct: 134 ILEQADMQPTIA-VGGELCDIGCNAKLGMGE---------------YMVAELDESDESFE 177

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                    +    TN+  DH++ +   QA  +A    F     +     +  +DA  K+
Sbjct: 178 Y-----FHPLYSVVTNVDWDHVNQYPDLQAVIDA-FGRFLRNTKEGGKLFLCGEDAGVKK 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK----QQVTISVEGKDFDFLFPLPGEFQ 311
           V++   N     + +  +            ++          +   K       + GE  
Sbjct: 232 VIEALPNDLKNRMYLFGRDPSFDFYAADIQYHCGGGLNYTFYAKGRKMGTIELVISGEHN 291

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V ++L A G+   +G+   +V + +   H    R +          +Y DY H    +E 
Sbjct: 292 VLDSLAACGVAHELGVSFDIVQKAMRMFHGAKRRLQLRAMCPDNILVYDDYGHHPREIEA 351

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSEDP---- 425
            L  +R +   R I++        + +  +  + A  LA +   ++       E P    
Sbjct: 352 TLNAVRLMYPDRRILLIFQPHRYTRTQ-ALFDRFAEVLASVPQVVLLPIYAADEQPIPGV 410

Query: 426 --EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             E I A +       +   N++EA   A+ ++   D+++
Sbjct: 411 SSELIGATVAKLGGSCVLAQNKVEAAGRALSLVRPGDLIL 450


>gi|290580950|ref|YP_003485342.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
 gi|254997849|dbj|BAH88450.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
          Length = 451

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 132/380 (34%), Gaps = 50/380 (13%)

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +  N P++    T   L+   S         I+ +TG++GK++  + +  +   +G S+
Sbjct: 92  ALEKNIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIADVLNHAGQSA 141

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G     +S      +T    +                  +E SS  L     +    
Sbjct: 142 RLSGNIGFPASEVA-QPVTEKDIL-----------------VMELSSFQL--MGTESFHP 181

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TNL   HIDYH + + Y  AK  + + +  K+   + +  D         A+   
Sbjct: 182 HMAVITNLMPTHIDYHGSFENYIEAKWNIQKNMTEKDFLVLNFNQD----LAKDLANQTQ 237

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +++    + K         +   +   I    +       +PG   V NAL    +   
Sbjct: 238 TKIIPFSTKEKVDGAYLDGQMLCFKGQAIMSASE-----LGVPGSHNVENALATIAVAKL 292

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+ +  + E L     V  R + +G  +         +     +    K +    + ++
Sbjct: 293 SGVSNETIRETLIHFGGVKHRLQSLGNIAGVKFYNDSKSTN---ILATQKALSGFDNSKV 349

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           I++   G DR      ++  I   L  + I+ +  PR        A +  G+  ++   +
Sbjct: 350 ILI-AGGLDRGNEFDELVPDIKG-LKKMIILGESAPR-----LKHAAVQAGVT-YLNAKD 401

Query: 445 RIEAIRTAIEMLNKQDVLVV 464
             +A R A +  +  DV+++
Sbjct: 402 VAQATRIAFQEASPGDVVLL 421


>gi|306827028|ref|ZP_07460326.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430774|gb|EFM33785.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
          Length = 438

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 134/417 (32%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 34  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 93

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 94  FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 141

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 142 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 190

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 191 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTQATVIPFSTQKVVDGAYLKDGILY--- 246

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 247 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 301

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 302 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 357

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 358 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 407


>gi|161596204|gb|ABX73864.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           053442]
          Length = 451

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 46  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 95

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 96  THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 153

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 154 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 193

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 194 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 251

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 252 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 311

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
                   DY H    +   L   R     +  +V      R    R +       L+  
Sbjct: 312 GGTALLVDDYGHHPVEMAATLAAARGAYPEKR-LVLAFQPHRYTRTRDLFEDFTKVLNTV 370

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 371 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 430

Query: 464 VAGKG 468
             G G
Sbjct: 431 NMGAG 435


>gi|254375208|ref|ZP_04990688.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
 gi|151572926|gb|EDN38580.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3548]
          Length = 451

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 93/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +              + +     I       I  +G D  F   LPG++ V NA      
Sbjct: 229 SDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGKYNVQNATACIIA 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIHNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I 
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALSLADQLILLPTYSAGEQIIKGAESQDIA 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++       AI    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHAIYFLEKLANENTVILIQGAG 440


>gi|221069122|ref|ZP_03545227.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
 gi|220714145|gb|EED69513.1| cyanophycin synthetase [Comamonas testosteroni KF-1]
          Length = 856

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 13/234 (5%)

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A +               +            + +++     +  +     S+  +D   
Sbjct: 607 VAAMAHVCPGKVIFFAADRHHPVMATHRAQGSRVVYVDGDAIVAAEGSWRESIALRDIPL 666

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRI 358
                  FQV N + + G   A G+    +   L          P RF     + +G  I
Sbjct: 667 TRNGTITFQVENVMASIGAAWAAGLPWQTIRRGLAGFLNDSDNAPARFNV--MDYKGATI 724

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H  +++  + + +  + + R  VV    GDR         +I   + D  ++  D
Sbjct: 725 IADYGHNPDAIRALSQAVEAMPAKRRSVVISGAGDRRDQDITEQTQILGKVFDEVVLYQD 784

Query: 419 NP-RSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVA 465
              R     ++ A +  G+ G        E      AI  A+  L   D+ +V 
Sbjct: 785 ACQRGRVDGEVLALLKKGLEGAPRTSYSTEIHGEFLAIDHALARLQPGDLCLVL 838


>gi|302036130|ref|YP_003796452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
 gi|300604194|emb|CBK40526.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
          Length = 462

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 125/413 (30%), Gaps = 42/413 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           G  +   A+  GA+ +V+S      L   +        ++            ASR     
Sbjct: 59  GAQY-ESALE-GADLVVISPGVPTHLDALNRVRARGVRVIG-------ELELASRFLTAP 109

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AVTGT+GKS+  + + +  Q SG  +F  G             +        +  
Sbjct: 110 ---VVAVTGTNGKSTTVTLIGKFLQESGKRAFVGGNLG----------IAASEAALTSVQ 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               S+    +V +E SS  L+    +       +  N+  DH+D + + + Y  AK  +
Sbjct: 157 AKAGSAAPYEYVVLEVSSFQLET--TEQFHPWIAAILNVTLDHMDRYASVEDYVAAKATI 214

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F      +    ++  D      ++          S                 +    T+
Sbjct: 215 FANQTAGDY--SLFNLDDARVAALRGRTKGTVLGFSRSGATVSGVAGATVLDGDLIVTTV 272

Query: 294 SVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               ++      +   G   V N + A    +  G     V   L     +    E V  
Sbjct: 273 RGRREEICRRSDMRLIGLHNVENVMAAVTYGLLCGCSIEAVRAVLRSFPGLEHALEVVRE 332

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 +        +++   L+ I        I +   G D+      +   I   +  
Sbjct: 333 RRGVRFVNDSKGTNVDAVLKALEGIDQ-----PIWLIAGGRDKGGDFSRLERAIRERVKG 387

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++       E   +I+A +              +A+  A       +V+++
Sbjct: 388 LILI------GEAAGRIQAAMGD-FDRCRPAATLRDAVELAAREAQPGEVVLL 433


>gi|220906333|ref|YP_002481644.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 7425]
 gi|254765995|sp|B8HWY0|MURC_CYAP4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219862944|gb|ACL43283.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7425]
          Length = 482

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 67/424 (15%), Positives = 129/424 (30%), Gaps = 56/424 (13%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A      ++   +    PIL   +    L               +AV GT GK++
Sbjct: 75  VVCSTAIHADNPEYKMAVELGCPILHRSDLLAALIE---------RYQSIAVAGTHGKTT 125

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +    G     I     + ++  + R      +      S             
Sbjct: 126 TSSMIGYLL-LQGGVDPTIIIGGEVQAWEGNARTGMGEYLVAEADESD------------ 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                     L       G  TN+  DH D++   +        +FE         +   
Sbjct: 173 --------GSLAKFAPQIGVITNIELDHPDHYSNLEQVIK----IFETFANHCQTVVACW 220

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPL 306
           D    ++ +    +      S+  +    +     +   +  +    E  +   +    L
Sbjct: 221 DCPTIRDRLTVLPDQSVVSYSLFRESGADYSVDQISYGPQGTLAQVWERGELLGELSTKL 280

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NAL A  +   +G+D   +   + +      RFE  G  + G R   DYAH  
Sbjct: 281 LGAHNLKNALAAVAVGRLLGLDFITISRGIARFEGARRRFEVRG-EAHGIRFVDDYAHHP 339

Query: 367 NSLEMILKNIRTI---------TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVT 416
           + +   L   R              R++ VF      R         +   D AD+ ++T
Sbjct: 340 SEIRATLAAGRLQLKSREEFISPWQRLVAVFQPHRYTRTFTFLTEFSQAFGD-ADLVVLT 398

Query: 417 DDNPRSE-----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
           D     E       + +   +         + +  E      + L   D+++V G G+  
Sbjct: 399 DIYSAGERDRLVQGQHLADCMAEYHAQVQYQPSLEEVKLFLKQTLRPGDLVLVLGAGNLN 458

Query: 472 VHIV 475
             I+
Sbjct: 459 -QII 461


>gi|222478762|ref|YP_002564999.1| dihydropteroate synthase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451664|gb|ACM55929.1| dihydropteroate synthase [Halorubrum lacusprofundi ATCC 49239]
          Length = 878

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 9/140 (6%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               +         PGRFE V T        +D AH   +   +   +       + +V+
Sbjct: 297 PDEAVRDGLARATWPGRFEVVDTAPL---TVLDGAHNPAACRTLAGTLAEYDYDDLHLVY 353

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEII-HGIPGFIEKGNRI 446
           G   D+D          AL  AD A+    D  R+EDPE + A +   G+       +  
Sbjct: 354 GAMHDKDHVG----AASALPDADSAVTCRPDLDRAEDPEVLAAALRTAGVDDVTAGDDVA 409

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
            A+ TA+E  +  D +++ G
Sbjct: 410 AALETAVERADLGDCVLLVG 429


>gi|153009075|ref|YP_001370290.1| UDP-N-acetylmuramate--L-alanine ligase [Ochrobactrum anthropi ATCC
           49188]
 gi|166224711|sp|A6WZQ7|MURC_OCHA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151560963|gb|ABS14461.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum anthropi ATCC
           49188]
          Length = 468

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 88/281 (31%), Gaps = 16/281 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++   +    A  +  E +       +          V +   
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFENVRAAFAQFVENVPFYGFGVMCLDHPEVQALVSRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALV 317
                              ++    +   V I     +         P+PG+  V NA  
Sbjct: 233 RRIVTYGQNPQADVRFVNHRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGQHNVSNATA 292

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +GI +  +   L     V  RF   G    G  I+ DY H    +  +LK  R
Sbjct: 293 AIAVAHELGISADDIRRGLGSFGGVKRRFTHTG-TWNGVEIFDDYGHHPVEIRAVLKAAR 351

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKIR 429
             T GR++ +      R      +  + A     AD  IVT      EDP      E + 
Sbjct: 352 EATKGRVVAIV--QPHRYTRLASLFDEFAACFNDADTVIVTPVYTAGEDPIEGVNSEALV 409

Query: 430 AEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           + I           +  EA+      +    D +V  G G+
Sbjct: 410 SRIKTAGHRDARYASGPEALAPLVASIAEPGDFVVCLGAGN 450


>gi|325203527|gb|ADY98980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240355]
          Length = 445

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKDKIFRGDGVQVLNA-----DDTFCCAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++ A       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRHDLDGCGLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|113869225|ref|YP_727714.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha H16]
 gi|123032665|sp|Q0K6M5|MURC_RALEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113528001|emb|CAJ94346.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 477

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 89/435 (20%), Positives = 142/435 (32%), Gaps = 57/435 (13%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKH 113
            GH     A   GA A+VVS+A S  +       +  I VV   R   L+       G  
Sbjct: 55  HGHD---AANVTGANAVVVSTAVSGDNPEVLAARSKRIPVVP--RAVMLAELMRLKQG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I    
Sbjct: 108 ----VAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEA 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S  S                       +  +    TN+  DH+D +    A       
Sbjct: 162 DESDASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFI 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
            F + LP    A++  DD   +E++        R         +               Q
Sbjct: 202 EFTQRLPFYGIAVLCVDDPNVREILPFVSKPVVRYGFAEDAQIRAVDARAVDGQMHFTVQ 261

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +          + +  LPG   V NAL A  +   + +  A +++ L + H V  RF+  
Sbjct: 262 RQLNGHTEPPLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRY 321

Query: 350 GTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGK 398
           G  +         +  DY H    +   L   R    GR +V+      F    D  +  
Sbjct: 322 GEVATPDGAGTFTLVDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDF 381

Query: 399 RPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEII-HGIPGFIEKGNRIE---AIRTAI 453
             ++G +   L        + P  + D   +   +   G    +      E   AI  A+
Sbjct: 382 VKVLGTVDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILDAV 441

Query: 454 EMLNKQDVLVVAGKG 468
                 DV+V  G G
Sbjct: 442 ---RPGDVVVTMGAG 453


>gi|20807265|ref|NP_622436.1| folylpolyglutamate synthase [Thermoanaerobacter tengcongensis MB4]
 gi|20515773|gb|AAM24040.1| Folylpolyglutamate synthase [Thermoanaerobacter tengcongensis MB4]
          Length = 431

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 11/139 (7%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              ++        PGR E +        + +D AH    + ++ ++++     R+I+V G
Sbjct: 283 EEAIKRGLMNAKWPGRLEVMKKRPY---VVIDGAHNPQGMTVLKESLKLFNYRRLILVIG 339

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIE 447
              D++  K   M  I   +AD+ I T   P S D      ++   I            +
Sbjct: 340 MLKDKEVDK---MLNIITPVADVIITTT--PLS-DRACGAKDLASKISRNSVFAVDQIDK 393

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A+  A++M  ++D+++  G
Sbjct: 394 AVNEALKMAGEEDMVLFCG 412


>gi|307294495|ref|ZP_07574337.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
 gi|306878969|gb|EFN10187.1| UDP-N-acetylmuramate/alanine ligase [Sphingobium chlorophenolicum
           L-1]
          Length = 473

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 93/436 (21%), Positives = 154/436 (35%), Gaps = 63/436 (14%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGK 112
           GH     A   G A  +V S+A    +    +      P++        L          
Sbjct: 59  GHK----AENLGDAAVVVTSTAIKKGNPEVDLALERRVPVIRRAEMLAELMRL------- 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             ++ +AV GT GK++  S V  +    G+    I     I+S+  + RL          
Sbjct: 108 --KSTVAVAGTHGKTTTTSMVAALLDAGGVDPTVI-NGGIINSYGSNARLGNSE------ 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VEA        RLDG        TN+  +H+D++ +     +A   
Sbjct: 159 -----------WMVVEADESDGSFLRLDGTL---AVVTNIDPEHLDHYGSFDKVKDA-FV 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-----IHLKKVCAIHN 287
            F E +P    A++  D    + ++ R  +          Q          +        
Sbjct: 204 EFVENVPFYGAAMLCLDHPEVQAILPRVQDRRIVTYGFSAQADIRGENVQPIPGGNRFDV 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +       +      P+PG   V NA+ A G+ + +GID A V     K   V  RF 
Sbjct: 264 QIRERDGSLRRIEGIEMPMPGRHNVLNAMAAIGVALQMGIDDATVQTGFAKFGGVKRRFT 323

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            VG  + GG    +  DY H    ++ +L   R    GR+I V      R    R +M +
Sbjct: 324 KVGEIAVGGGTATVIDDYGHHPVEIKAVLAAAREGAKGRVIAVV--QPHRFTRLRDLMDE 381

Query: 405 I--ALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIPGFIEKGNRIEA-IRTAIEML--- 456
              A + ADI       P  E P +    AE++ G+     +G+R  A +  A ++    
Sbjct: 382 FQQAFNDADIVYAAPVYPAGEQPIEGVDSAELVAGLKR---RGHRNAATVEGADDLARVI 438

Query: 457 ----NKQDVLVVAGKG 468
                  D+++  G G
Sbjct: 439 AADVQADDMIICLGAG 454


>gi|295399713|ref|ZP_06809694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978116|gb|EFG53713.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 451

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 118/362 (32%), Gaps = 43/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + + ++ +         G     +         
Sbjct: 104 ELAYHISEAP---FIGITGSNGKTTTTTLIYEMLREGEKRPLLAGNIGVAACEV------ 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          ++    +  E SS  L   R    +       N+   H+DYH T+
Sbjct: 155 ------------AQKAEANNWLVTELSSFQLAGIR--DFRPHISVLLNIFDAHLDYHGTK 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK  +F+    ++  A++ ADD     + + +        +        ++K   
Sbjct: 201 EAYAQAKANIFKNQTNED-YAVVNADDELVMRLAENSCAQKVIFSATKKLDSGAYIKDGW 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N + V    +         LPG+  + N L A  +    G+D+  + + L     V 
Sbjct: 260 IYWNDEAVIAVSDIV-------LPGKHNLENILAAVAVAKLTGVDNKAIAKVLTTFTGVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++ T           A    + +  L           +++   G DR      ++ 
Sbjct: 313 HRLQYIATIDGRKFFNDSKATNILATQRALSAF----EKDSVILLAGGLDRGNEFDALLP 368

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +        I+       +   KI       GI       N  +A+  A ++    DV+
Sbjct: 369 YL--HNVKAIIL-----FGQTAAKIARVAKQAGIETIEYVDNVEKAVPVAYQLSEPGDVI 421

Query: 463 VV 464
           ++
Sbjct: 422 LL 423


>gi|326315571|ref|YP_004233243.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372407|gb|ADX44676.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 475

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 140/435 (32%), Gaps = 61/435 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA+A+V S+A    +          I VV      L+           +
Sbjct: 56  GH--AAAHIE-GADAVVTSTAVQADNPEVLAARERKIPVVPRAL-MLAELMRL------K 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +   +G   +F IG    ++S   + +L     I +    
Sbjct: 106 RGIAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIG--GRLNSAGANAKLGQGEYIVVEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH++ +        +    F
Sbjct: 164 SDASFLN--------------------LLPVMAVVTNIDADHMETYGHDFGRLKSAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    AI+  D+   +E++               +   +    V A   + +  + 
Sbjct: 204 LHRMPFYGTAILCTDNPAIREILPDVTCPVTSYGF--SEDAQVRAVDVRADAGRMRFRVQ 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D D +  L GE  V NAL A  + + + I    +L  L +   V  RF+  G
Sbjct: 262 RRNGVTLPDLDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYG 321

Query: 351 ----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR------P 400
                      +  DY H    +   L   R    GR +V+        + +        
Sbjct: 322 ELPAQGGGTFTLIEDYGHHPVEMTATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVK 381

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAI 453
           +MG      AD  ++T+     E P        +   +   G    +   +  E  R   
Sbjct: 382 VMGS-----ADAVLLTEVYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIA 436

Query: 454 EMLNKQDVLVVAGKG 468
           +     DV++  G G
Sbjct: 437 DNARSGDVVLCMGAG 451


>gi|258654049|ref|YP_003203205.1| UDP-N-acetylmuramate--L-alanine ligase [Nakamurella multipartita
           DSM 44233]
 gi|258557274|gb|ACV80216.1| UDP-N-acetylmuramate/alanine ligase [Nakamurella multipartita DSM
           44233]
          Length = 482

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 90/414 (21%), Positives = 138/414 (33%), Gaps = 46/414 (11%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G  A+VVS+A      +  A   +   ++   +    L               + V GT 
Sbjct: 79  GPTAVVVSTAVRPDNPEVVAARAAGIAVVRRADALAAL---------MTDRRSVCVAGTH 129

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+S  S +    Q +GL          ++                    S         
Sbjct: 130 GKTSTTSMLTVALQHAGLD-PSFAIGGELTGSGLGAHHGQGDVFVAEADESD-------G 181

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +  S HG                TN+  DH+D+H T +AY  A    F E +      
Sbjct: 182 SFLSFSPHG-------------AIVTNIEPDHLDHHGTAEAYT-AVFDQFIERIEPGGFL 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           +I ADD  S  +  R                        +     +  +++         
Sbjct: 228 VICADDPGSAALAARVRLRRLVTYGRAADAVVRLAVDPASDPATGEPVVTLADGTAVPLR 287

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  + NA+ A    + +G+D+ L+   L     V  RFE  G    G  +Y DYA
Sbjct: 288 LTVPGDHMLLNAVAALAAGVELGVDADLLAAGLAGYTGVRRRFELKGVAG-GVTVYDDYA 346

Query: 364 HTSNSLEMILKNIRTITS--GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           H    +   L   R +    GR++VVF      R        G  AL  AD+ +V D   
Sbjct: 347 HHPTEVAAQLAAARGVVPADGRLVVVFQPHLYSRTATFATEFG-AALGTADLVVVLDIYG 405

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             EDP      E I A +  G P       R  A R   E++   D+++  G G
Sbjct: 406 AREDPRPGVTGELITAAVPAG-PDVRYHPERSTAARFVAEIVRAGDLVITMGAG 458


>gi|6634655|emb|CAB64524.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------PIHEVAQVVGAKNDVSIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA   +  
Sbjct: 54 FIERAFENGAAVTLSD 69


>gi|46446885|ref|YP_008250.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|62900536|sp|Q6MBS4|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 444

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 62/414 (14%), Positives = 137/414 (33%), Gaps = 54/414 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFS--------ATIRSNTPILV--VDNTRKFLSLFASRLY 110
           P+ +   A+ +V+ +     D            I SN P++    ++ ++ +        
Sbjct: 48  PEILELKAKGLVIQADCETIDLKTFDLIVVSPGIPSNHPLIKKAHEHKKEVIGEI-ELGC 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                +I+ VTGT+GK++V   +  I   +GL +  +G   T           T   + L
Sbjct: 107 RASCHSIIGVTGTNGKTTVTLLITHILNANGLKAKALGNVGTPL---------TREILTL 157

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                           +E SS+ LD  +   +        N+  DH++ ++T + Y  +K
Sbjct: 158 ---------DFQEIAVLELSSYQLDTFQQQVLDE--AVVLNITPDHLERYETMENYAKSK 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            ++ + L       +        + ++           + GY         +C++  +  
Sbjct: 207 FQIGKCLKKSGKLFVERKAAVEYQHLL------NFPHSTYGYLPSCHTYTDLCSVFLEGM 260

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +  +               N L A  +C   GI     L+ L+       R EFV 
Sbjct: 261 QQFELPLEWQGKENHDLE-----NLLAAYAICARRGIKPQQFLQALKTFQKPSHRVEFVL 315

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +             +++   +++I      R + +   G D+       +  +     
Sbjct: 316 EKNGIHFYDDSKGTNIDAVMRAVQSI-----NRPVFLIAGGVDKGASYVAWL-NVFKGHV 369

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                       +   KI+ E+   I     + N  +A++ A +   + D +++
Sbjct: 370 KKVYAI-----GQAANKIQKELSLHI-RVQIEANLDDAVKQAYQDAKEGDAVLL 417


>gi|298531034|ref|ZP_07018435.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509057|gb|EFI32962.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 453

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 138/412 (33%), Gaps = 41/412 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G   +VV S    +D    +++ +  + V    + L+       G      +AV GT GK
Sbjct: 63  GPAQVVVKSTAVREDNPEILQARSAGIPVIPRAEMLAELMRLKTG------VAVAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  SF+  I + +GL    I     ++ +  +    T   +      S  S        
Sbjct: 117 TTTTSFLGTIFKEAGLDPTVI-IGGRLNKYGSNALPGTGEYLIAEADESDGSFLT----- 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +  I    TN+G DH+DY++            F   +P     ++
Sbjct: 171 ---------------LLPIINIVTNIGADHLDYYRDLDEIR-ESFVRFMNNVPFYGLNVV 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   ++V+ R                 +  + +      Q      +          
Sbjct: 215 CGDDPEIRQVLDRVKRPVLTYGFQEQS--RLRAEILSTSPGSQFNVFHDQNFWGRVKLNH 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V N L A G+ I  GID   +L  L     V  RFE  G       +  DY H  
Sbjct: 273 PGRHNVLNCLAAIGVAIQAGIDKQDILRSLADFGGVGRRFERKGIKD-DVIVVDDYGHHP 331

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSED 424
             +   L+  R     R +VV      R    R   G+    L  AD+ ++T+  P SED
Sbjct: 332 TEIAATLETARQCHPDRRLVVL-FQPHRFTRTRDFFGEFCRVLAGADLLLLTEIYPASED 390

Query: 425 PEKIRA--EIIHGIPGFIEKGNR-----IEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +  G+        R      EA R    +L + D+ +  G G+
Sbjct: 391 PIPGVNGWSLAQGVMQVARTPVRFYQSLDEAGRDLDSVLKQGDLFMTLGAGN 442


>gi|167838002|ref|ZP_02464861.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           MSMB43]
          Length = 465

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 143/435 (32%), Gaps = 64/435 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVP--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DDA  ++++        R          +  + V A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCIDDANVRQIVPLISKPVVRYGF--SADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             +G++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G  
Sbjct: 261 LRDGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 353 SRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                    +  DY H    +   +   R    GR  +V      R    R         
Sbjct: 321 PVADGGAYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNV 379

Query: 409 LA--DIAIVTDDNPRSEDP------EKIRAEIIHG-------IPGFIEKGNRIEAIRTAI 453
           L+  D  ++T+     E P      + +   +          +    E  +         
Sbjct: 380 LSTVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPMFVAAVDEVPD------ALA 433

Query: 454 EMLNKQDVLVVAGKG 468
           ++    DV++  G G
Sbjct: 434 KLARAGDVVITMGAG 448


>gi|296125459|ref|YP_003632711.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
 gi|296017275|gb|ADG70512.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
          Length = 462

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 139/411 (33%), Gaps = 43/411 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V SSA S  +           + V +  + L+      YG      +A++G+ GK++ 
Sbjct: 69  AVVTSSAISPANEEIVAAKAKK-ITVISRGEMLAELMRLRYG------IAISGSHGKTTT 121

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + QI   +GL+   I   +  +  +                 +  +     ++  EA
Sbjct: 122 TSLISQIMMHAGLNPVCIIGGNHFNLKSN----------------AVCNDLSSEYMVCEA 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                   R   +  +    TN+  DH+DY+   +A   A +    ++       + + +
Sbjct: 166 DESDGSFLR---LSPVINVVTNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLCFEN 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D                     Y                  +    +    +F  PL GE
Sbjct: 223 DVVRDLSKSANKKYYSYGFDKSYDFHVDKDSIRVEAPITYFIAYHNKECLGEFSVPLIGE 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N+L + G+   +GID   + E L+    V  R        +   ++ DYAH    +
Sbjct: 283 HNILNSLASIGVAYHLGIDVPNIKEGLKTFEGVGRRL--NKLYDKEITLFDDYAHHPTEI 340

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTDDNPRSED 424
           +  L ++R    S RII VF       +  R  +     + A + AD  I+TD     E 
Sbjct: 341 KATLSSVRNAYKSRRIIAVFQP----HRYSRTELLLNDFEYAFNDADEVIITDIYAAGEA 396

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P      E I   +           N  E +     +    D+++  G G+
Sbjct: 397 PIAGVNGEIICDIVKKQNKNVRYIKNIDEVLPVLESIKKDGDIIITLGAGN 447


>gi|168204898|ref|ZP_02630903.1| FolC bifunctional protein [Clostridium perfringens E str. JGS1987]
 gi|170663533|gb|EDT16216.1| FolC bifunctional protein [Clostridium perfringens E str. JGS1987]
          Length = 441

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 134/391 (34%), Gaps = 47/391 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
                 + + GT+GK S  + +  + + +G                +             
Sbjct: 37  HKDTKFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENINKDDL 96

Query: 164 ----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                 T   I  A    Y S + V +  +E    G    RLD 
Sbjct: 97  AVLMGDVKKAIDKVMKLGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGG----RLDA 152

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             ++      L    +D+            +    ++    P I Y  +  + EV+K   
Sbjct: 153 TNVVIPEVVVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVPVISYPQEEKALEVIKERC 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N     L V       ++  +    + Q++ +S+E +  +    L G+ QV N LVA   
Sbjct: 213 NELGCNLEVVNTEDIKNII-IDKEKHVQKIEVSLEDEILEIDLGLLGDHQVKNFLVALKT 271

Query: 322 CIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            I +  +    S   ++   K     GR E +   +    + +D AH  + +  +  +I 
Sbjct: 272 LIKLRNNGVNISNESIKEGFKKVRWIGRMEVL---NENPLVVIDGAHNIDGIRSLRNSID 328

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
              + + I ++ G  GD+       M +      D  ++ + +  R+ED E++  ++   
Sbjct: 329 KYFNFKNITLILGVLGDKQVD---EMVEEITRGVDKVVIVEPHSDRAEDIEELYIKVKKY 385

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    +  +  +A   A  + N+ D+L++ G
Sbjct: 386 VKEVFKFKDYKDAYNKAYSLTNRDDLLLICG 416


>gi|189485641|ref|YP_001956582.1| UDP-N-acetylmuramate-L-alanine ligase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|229620440|sp|B1GYM8|MURC_UNCTG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170287600|dbj|BAG14121.1| UDP-N-acetylmuramate-L-alanine ligase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 450

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 22/283 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  I    TN+  DH+DY+ + +    A        +P    AII +D+   ++++ +  
Sbjct: 171 LSPIITVVTNIDNDHLDYYDSMENLKEA-FVKHINCIPFYGTAIICSDNEVVRKIIPQIT 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                   +G         KV   ++       +  K       + G+  V N+L A G+
Sbjct: 230 RRYITYGLMGNPDIKASNIKV-LKNHTSFDVFYMRKKVGSVCMKILGKHNVSNSLAAIGV 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +GI  + + + + K   V  R E  G    G  +  DY H    +   L+ I+    
Sbjct: 289 GLRLGISFSSIADTINKFDGVSRRLEIKG-EKNGMMVIDDYGHHPTEVAATLRAIKLFWP 347

Query: 382 GRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII 433
            R +VV        + K+     G+   D AD   V D     E P      + I   ++
Sbjct: 348 ERRLVVLFQPHRYTRTKQLFNEFGRSFSD-ADFVKVLDIYSAGEQPIDEVTSDLILESLV 406

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG------KGHE 470
                  +  +  E     + +    DV++  G      KG E
Sbjct: 407 SNKCKAEKFSDLEE-FSKGLSV---GDVVLTLGAGDVWKKGEE 445


>gi|139473454|ref|YP_001128170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes str. Manfredo]
 gi|158512776|sp|A2RDK9|MURD_STRPG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134271701|emb|CAM29934.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes str. Manfredo]
          Length = 452

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 134/417 (32%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPLLTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 108 FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 155

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 156 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 205 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTKATVIPFSTQKVVDGAYLNDGILY--- 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 261 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 316 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 372 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|19746474|ref|NP_607610.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS8232]
 gi|50914620|ref|YP_060592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10394]
 gi|30316063|sp|Q8P063|MURD_STRP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390307|sp|Q5XB04|MURD_STRP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|19748678|gb|AAL98109.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes MGAS8232]
 gi|50903694|gb|AAT87409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10394]
          Length = 452

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 134/417 (32%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 108 FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 155

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 156 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 205 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTKATVIPFSTQKVVDGAYLNDGILY--- 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 261 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 316 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 372 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|295704238|ref|YP_003597313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294801897|gb|ADF38963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 172

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 53/203 (26%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G++ + N L A G  +        ++  L +L    GRF+ +       ++ +DYA
Sbjct: 1   MPVYGDYNIANVLAAIGTALHFEYHIEDIISVLPQLESPEGRFQVM-EGPNNQKVILDYA 59

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           HT  +   +++ ++ +   +                            + ++T D+P   
Sbjct: 60  HTPVAHTRLVEEVKKMEYNQ----------------------------LIVITVDHPGHH 91

Query: 424 DPEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG---------KGH 469
           DP  I  +++ G              R E +  ++ +    D++++           KG+
Sbjct: 92  DPNVIVDQVMTGFSNPSASNIHRAPTRTEGVLKSLSLGKPNDIILLTSGCINGAQLVKGN 151

Query: 470 ETVHIVTNGEKKMSVDCDIIREI 492
           E              D +II   
Sbjct: 152 E----------IPHSDEEIIASY 164


>gi|313903534|ref|ZP_07836924.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466087|gb|EFR61611.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 478

 Score = 66.8 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 98/282 (34%), Gaps = 20/282 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+  +H+D+++          R F   +      +   D    ++++     
Sbjct: 182 FPRIAVVTNVEPEHLDHYEGDFRRLLDAFRGFLGNVRPGGLVVACGDHPVVRQLLAGLPA 241

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLFPLPGEFQVYNALVAA 319
              RV   G + +  HL+        +    SV  +          +PGE  V NAL A 
Sbjct: 242 GRVRVARYGVEAEDCHLRARDVQTGPEGTRFSVWQEGRPLGEVTLAVPGEHNVLNALAAL 301

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + + +G+   +  + L   H    RF+ +     G  +  DYAH    +   L+  R  
Sbjct: 302 AVGLEVGVPFGVAAQALAGFHGAKRRFQVIHDRD-GILVVDDYAHHPTEIRATLRAARQR 360

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDN-PRSEDP----------E 426
                 V+      R    R +M + A     AD  I+T+   P  E P          E
Sbjct: 361 RGAAGRVIAVFQPQRYSRTRLLMDEFARAFGDADKVILTEIYAPPGERPIPGVSSAVLAE 420

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +I  E   G P      +R + I   +  +   D+++  G G
Sbjct: 421 RIAQE--EGRP-VDLFASREDLIEHLLATVRPGDLVLTMGAG 459


>gi|149927133|ref|ZP_01915390.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
 gi|149824072|gb|EDM83293.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
          Length = 466

 Score = 66.8 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 137/418 (32%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
            GA+A+V S+A    +          + VV   R   L+       G      +AV GT 
Sbjct: 63  AGADAVVTSTAVGGSNPEVLAARAARVPVVP--RAVMLAELMRLKQG------IAVAGTH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  I    G           ++S   + +L T   + +    S  S      
Sbjct: 115 GKTTTTSLVASIL-AEGKLDPTFVIGGRLNSAGANAKLGTGEFMVVEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH++ +    A        F + LP    A
Sbjct: 171 -----------------LMPVIAVITNIDADHMETYGHDFARLKQAFVEFTQRLPFYGVA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
            +  DD   +E+M     +   V     +   I    V A   + + T+  E +   D  
Sbjct: 214 AVCVDDPCVREIM--PFVSKTIVTYGLSEQAQIRAVNVQACQGQMKFTVLREDEAPLDIT 271

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIY 359
             LPG+  V N+L A  +   IG+    ++  LEK + V  RF+  G           + 
Sbjct: 272 LNLPGDHNVRNSLAAIAVATEIGVSDEAIVAALEKFNGVGRRFQHYGEVAAKEGGHFLVV 331

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    +   L   R     +  +V      R    R         L   D+ I+++
Sbjct: 332 DDYGHHPVEMAATLAAARGAYPDKR-LVLAFQPHRYTRTRDCFEDFVKVLGTPDLVILSE 390

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E P        +   +   G    +   +  E   T + +    D+++  G G
Sbjct: 391 VYSAGEAPIVAADGRSLARAVRVAGRTEPVFVEDMNEMKSTILNIARDGDLVITMGAG 448


>gi|86160187|ref|YP_466972.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|118595640|sp|Q2IG29|MURD_ANADE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85776698|gb|ABC83535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 462

 Score = 66.8 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 134/418 (32%), Gaps = 55/418 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPIL-VVDNTRKFLSLFASRLYGK 112
           GH     A   GA+ +V S    L +    A  R   P+   V          A+R  G 
Sbjct: 62  GHD---AADFTGADLVVASPGVPLANPEIQAARRRGVPVWGEV--------ELAARFLGG 110

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P  I+ +TGT+GKS+  +    +       +F  G   T  S    +     + +    
Sbjct: 111 LP--IVGITGTNGKSTTTALTGALL-ARHRRTFVGGNLGTPLSELVLSGEPAAAAV---- 163

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS  L+   ++  +    +  N+  DH+D +    AY  AK R
Sbjct: 164 --------------VELSSFQLE--GIERFRARVAAVLNVTPDHLDRYPDVDAYAAAKAR 207

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           LF      +  A+  A D  +  +   +    H  G                        
Sbjct: 208 LFAT-QEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEGGEPGPGGTAIW 266

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                    +       L G     NA+ A      +G+    V   L+    +  R E 
Sbjct: 267 YTPRGRAPERYQLHNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHHRLEL 326

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIA 406
           V        +    A   +S  + L       + R++++ G  G +      RP+ G   
Sbjct: 327 VAEGRGVEWVNDSKATNVDSTFVGLAAFPA-GAPRVVLIMGGRGKKAPYAPLRPLFGGRV 385

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 A++T      ED   I  E +  +      G+   A+R A  +    DV+++
Sbjct: 386 -----KALLTI----GEDAPAIERE-LGDLAPTEPCGDLPGAVRRAAVLSGPGDVVLL 433


>gi|328676147|gb|AEB27017.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida Fx1]
          Length = 451

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 92/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                          + +     I       I  +G D  F   LPG++ V NA      
Sbjct: 229 LDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGKYNVQNATACIIA 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I 
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---EALSLADQLILLPTYSAGEQIIKGAESQDIA 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++       AI    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHAIYFLEKLANENTVILIQGAG 440


>gi|33598261|ref|NP_885904.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella parapertussis
           12822]
 gi|33603172|ref|NP_890732.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella bronchiseptica
           RB50]
 gi|44888184|sp|Q7W4B5|MURC_BORPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|44888186|sp|Q7WFS3|MURC_BORBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33566819|emb|CAE39034.1| UDP-N-acetylmuramate--alanine ligase [Bordetella parapertussis]
 gi|33568803|emb|CAE34561.1| UDP-N-acetylmuramate--alanine ligase [Bordetella bronchiseptica
           RB50]
          Length = 468

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 94/439 (21%), Positives = 147/439 (33%), Gaps = 65/439 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH     A   GA AIV S+A +  +          I VV   R   L+           
Sbjct: 56  GHDRANVA---GAGAIVTSTAVAGDNPEVLAARAARIPVVP--RAVMLAELMRL------ 104

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +  +AV GT GK++  S V  +    G   +F IG    ++S   + RL     I +   
Sbjct: 105 KRGIAVAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGQGEYIVVEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A   +    
Sbjct: 163 ESDASFLN--------------------LLPVMAIVTNIDADHMDTYGHDVARLKSAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    AI+ ADDA  +E+M     +             +  + V A   + + T+
Sbjct: 203 FTQRLPFYGSAILCADDANVREIM--PFVSRPITTYGLSPDAQVCAQDVQADGTRMRFTV 260

Query: 294 SVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +D           LPG   V NAL A  +   +G+D A + E L     V  RF  
Sbjct: 261 QRRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQ 320

Query: 349 VG-------TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-- 399
            G              +  DY H    +   L   R     R IV+        + +   
Sbjct: 321 WGDLPVPAAHGGGTFTLVDDYGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCF 380

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIE---AI 449
               ++    AD  ++T+     E P        +   +   G    +   +  E   AI
Sbjct: 381 EDFVRVLGS-ADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAI 439

Query: 450 RTAIEMLNKQDVLVVAGKG 468
              ++ +   DV+VV G G
Sbjct: 440 ---LDFVRDGDVVVVMGAG 455


>gi|291615176|ref|YP_003525333.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585288|gb|ADE12946.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 464

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 122/393 (31%), Gaps = 38/393 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    + +          I V  +        A+  Y +    ++A+TG +GK++V 
Sbjct: 72  IVISPGVPVAEPLVQRAIARGIAVEGDIELLAQQLATNDYRR-NTKVIAITGANGKTTVT 130

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V  +C  +GL     G  S     A   R   P                     +E S
Sbjct: 131 SMVGAMCAAAGLDVQVAGNISPAVLDALRARDHQP-----------------QVWVLELS 173

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +   A    N+  DH+D + +  +Y  A  +    +             
Sbjct: 174 SFQLET--TYTLDADAAVVLNVTEDHLDRYDSMDSY--AAAKARIFIGNGVQVVNRDDVR 229

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           + +  +  R   +         +   I  +       +    I    +       + G  
Sbjct: 230 SAAMRLEGRKQTSFGLTPPASDEDWGITREGAATWLMQGAQKILRADE-----LQVTGMH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL A  LC A+G+    + E L     +P R E V                  + E
Sbjct: 285 NVANALAALALCRALGLPIVPLCEALRAFRGLPHRVEKVAEVGGITYYDDSKGTNVGATE 344

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             LK +     G+  VV   G  + Q   P+   +A   A   ++        D   I  
Sbjct: 345 AALKGL-----GKPAVVILGGDGKGQDFSPLKAAVA-QHARAVVLI-----GRDAPLIER 393

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +       +E  +  EA+  A       D ++
Sbjct: 394 ALQGCGKPVLEAHDMDEAVSMAAANAQTGDAVL 426


>gi|21672877|ref|NP_660942.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium tepidum
           TLS]
 gi|30316059|sp|Q8KGD2|MURD_CHLTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21645929|gb|AAM71284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium tepidum
           TLS]
          Length = 465

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 129/408 (31%), Gaps = 52/408 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A   +VS                 I VV          AS      P  I+ +TGT GK+
Sbjct: 69  AALCIVSPGIPQTVPVIREMHARGIPVVSEI-----ELASWFC---PARIIGITGTDGKT 120

Query: 128 SVASFVQQIC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           + A+ + +IC    +R G  +F +G                P    +    +        
Sbjct: 121 TTATLLHRICAAEGERKGFRAFSVGNIGI------------PFSSEVPGMTAAD------ 162

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ L+       +      TN+  DH+D +      +                
Sbjct: 163 IAVLELSSYQLEA--CFDFRPNIAVLTNVTPDHMDRYGGSIEAYATAKYRIHARQGAGDT 220

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGY--------QGKFIHLKKVCAIHNKQQVTISV 295
            I   DD   +    R+     R++ +G          G F+ ++    +      T  +
Sbjct: 221 LIYNHDDPILRAHFDRSEPWPFRLVRLGLRAETLDVAPGDFVSVEDGEIVVRASGSTERL 280

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D        GE  +YNAL +    +A G+    +   L     V  R E  G     
Sbjct: 281 MRVDEIMKPGFRGEHNLYNALSSVAAALAAGVAPETMRGVLAGFGGVEHRQELAGNACGL 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    A + N+L   L+++         V+   G D+      I   +   +A I  +
Sbjct: 341 NWINDSKATSVNALRQALQSVPAGM-----VLIAGGRDKGNDYSAIADLVREKVACIVAI 395

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  E   KI A+   G+   +E  +  EA+  A +       ++
Sbjct: 396 ------GESRRKI-ADAFRGVTPVVEAASLAEAVELARQNARPGASVL 436


>gi|282883313|ref|ZP_06291907.1| bifunctional protein FolC [Peptoniphilus lacrimalis 315-B]
 gi|281296817|gb|EFA89319.1| bifunctional protein FolC [Peptoniphilus lacrimalis 315-B]
          Length = 434

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
             GR + V   S+  RI +D AH    +E +  N++     ++ +V     D+D  K   
Sbjct: 295 WKGRMDLV---SKNPRILLDGAHNIGGIEKLRDNLKLFYFDKLYLVSSILKDKDHKK--- 348

Query: 402 MGKIALDLADIAIVTDDNPRS-EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           M +   ++AD+ I+ D   +S ED E +  E    +   + K +  EA+   + M    D
Sbjct: 349 MLEEIGEIADLLILVDLESKSNEDIEILEKEAQISVKKVMCKSSLKEALNYIVPMARPDD 408

Query: 461 VLVVAG 466
           +++V+G
Sbjct: 409 LILVSG 414


>gi|256788295|ref|ZP_05526726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           lividans TK24]
          Length = 475

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 132/408 (32%), Gaps = 48/408 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV +  +       T      + V  +    L+     L G+ P   LAVTGT+GK++ 
Sbjct: 76  LIVTAPGWKPTKPLFTAAGQAGVPVWGDVE--LAWRLRGLNGRKPAPWLAVTGTNGKTTT 133

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G              +    +           Q    ++VE 
Sbjct: 134 VQMLASILKAAGLRTAAVGNIGV----------SLLDAVT--------GEQEYDVLAVEL 175

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +AY  A  +         +     AD
Sbjct: 176 SSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRIYEGNHVACVYNVAD 231

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LF 304
            A    V       GCR +             V       +  +    K+          
Sbjct: 232 KATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVEGLLVDRAFVEDRQKNAQELAEVSDV 291

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AAGL  A G+ +A V + L        R   V        +    A 
Sbjct: 292 NPPAPHNIANALAAAGLARAFGVSAAAVRDGLRAFTPDAHRIAHVADVDGVAYVDDSKAT 351

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L    +      IV    G  +      ++   A  L    ++        D
Sbjct: 352 NTHATEASLAAYES------IVWIAGGLAKGATFDELVAGAAKRLRGAVLI------GAD 399

Query: 425 PEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
              IR  +    P       +R +      A++ A  +    D +++A
Sbjct: 400 RALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA 447


>gi|71903854|ref|YP_280657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS6180]
 gi|209559688|ref|YP_002286160.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes NZ131]
 gi|122063268|sp|Q48SK8|MURD_STRPM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226722949|sp|B5XMA3|MURD_STRPZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71802949|gb|AAX72302.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS6180]
 gi|209540889|gb|ACI61465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes NZ131]
          Length = 452

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 133/417 (31%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D         P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDEDFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 108 FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 155

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 156 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 205 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTKATVIPFSTQKVVDGAYLKDGILY--- 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 261 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 316 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 372 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|10566906|dbj|BAB16028.1| MurD [Streptococcus pyogenes]
          Length = 439

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 133/417 (31%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D         P +  DN   ++ L+           A 
Sbjct: 35  AAQALLEEGIKVICGSHPVELLDEDFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 94

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 95  FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 142

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 143 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 191

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 192 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTKATVIPFSTQKVVDGAYLKDGILY--- 247

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 248 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 302

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 303 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 358

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 359 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 408


>gi|56808764|ref|ZP_00366481.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M49 591]
          Length = 438

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 133/417 (31%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D         P +  DN   ++ L+           A 
Sbjct: 34  AAQALLEEGIKVICGSHPVELLDEDFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 93

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 94  FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 141

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 142 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 190

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 191 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTKATVIPFSTQKVVDGAYLKDGILY--- 246

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 247 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 301

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 302 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 357

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 358 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 407


>gi|21220566|ref|NP_626345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           coelicolor A3(2)]
 gi|289772189|ref|ZP_06531567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
 gi|30316144|sp|Q9S2W9|MURD_STRCO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|5689958|emb|CAB51995.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptomyces coelicolor A3(2)]
 gi|289702388|gb|EFD69817.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
          Length = 471

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 132/408 (32%), Gaps = 48/408 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV +  +       T      + V  +    L+     L G+ P   LAVTGT+GK++ 
Sbjct: 72  LIVTAPGWKPTKPLFTAAGQAGVPVWGDVE--LAWRLRGLNGRKPAPWLAVTGTNGKTTT 129

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G              +    +           Q    ++VE 
Sbjct: 130 VQMLASILKAAGLRTAAVGNIGV----------SLLDAVT--------GEQEYDVLAVEL 171

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +AY  A  +         +     AD
Sbjct: 172 SSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRIYEGNHVACVYNVAD 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LF 304
            A    V       GCR +             V       +  +    K+          
Sbjct: 228 KATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVEGLLVDRAFVEDRQKNAQELAEVSDV 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AAGL  A G+ +A V + L        R   V        +    A 
Sbjct: 288 NPPAPHNIANALAAAGLARAFGVSAAAVRDGLRAFTPDAHRIAHVADVDGVAYVDDSKAT 347

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L    +      IV    G  +      ++   A  L    ++        D
Sbjct: 348 NTHATEASLAAYES------IVWIAGGLAKGATFDELVAGAAKRLRGAVLI------GAD 395

Query: 425 PEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
              IR  +    P       +R +      A++ A  +    D +++A
Sbjct: 396 RALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA 443


>gi|312890540|ref|ZP_07750076.1| cyanophycin synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311296998|gb|EFQ74131.1| cyanophycin synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 873

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 115/365 (31%), Gaps = 28/365 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GK++    +  I + +G                   +  T  P+     L   
Sbjct: 485 IAITGTNGKTTTTRLIAHIVKNNGHRVGFTTSDGIYVQNTMMLKGDTTGPVSAEFIL--- 541

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
               V    +E +  G+ +  L   +   G  TN+  DH+              K  +  
Sbjct: 542 KDPTVDFAVLETARGGMLRSGLGFSQCDIGVITNIQEDHLGLSDIYNLDDLTRVKAIVIN 601

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +       +   ++   +   K   N               H K        +   I++
Sbjct: 602 AVKKDGWGILNADNEHCVRIGKKADCNIAYFSRHENNPVILKHAKNGGIACVCENGFITI 661

Query: 296 EGKDFDFLFPL----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----V 341
           +  D+                   F + N L A       G  +  +   LE        
Sbjct: 662 KKGDWKIRVQRVGLIPLTFGGTVPFMIENVLAATLAAFVWGFKTEDIKTSLETFIPSAAQ 721

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR        +  R  +D+AH  +    I + ++T+ S   I +    GDR       
Sbjct: 722 TPGRMNI--FEFKDFRFMIDFAHNPDGYNGIKEFLKTLDSPMKIGIIAGTGDRRDEDIRE 779

Query: 402 MGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIE 454
           +GKI+ ++ D  I+  + + R      I   +I GI        +      ++AI+ A+ 
Sbjct: 780 LGKISAEMFDHIILRQEKHLRGRTEANILGLLIEGILSVNPNASYEAIPKEVDAIKHAMT 839

Query: 455 MLNKQ 459
           +    
Sbjct: 840 LAKPG 844


>gi|150016657|ref|YP_001308911.1| FolC bifunctional protein [Clostridium beijerinckii NCIMB 8052]
 gi|149903122|gb|ABR33955.1| FolC bifunctional protein [Clostridium beijerinckii NCIMB 8052]
          Length = 437

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 82/201 (40%), Gaps = 13/201 (6%)

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-- 330
             +   L  +      Q V +      +   FPL GE Q+ N  VA      +  +    
Sbjct: 224 NEQNGKLVDINYDDFYQNVVVKSIKNIYKIKFPLLGEHQILNLGVALSAIEVLCENEKIE 283

Query: 331 ---LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIV 386
               ++E   +  V  GR E +        I +D AH  + ++ + KNI +     ++ +
Sbjct: 284 LNTSLIEKALQEVVWIGRLEVLKKKPT---IVIDGAHNIDGIKALRKNIEKYFKYNKLYL 340

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           + G   D+       M +    LA+    +T  + R+E  E ++ EI++     I   + 
Sbjct: 341 LLGILADKQV---KEMVQEITPLAEKVYALTPHSERAELSENLKEEILNYNSNTIALESY 397

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            EA   A++   ++D++VV+G
Sbjct: 398 EEAFSLALKEAKEEDLIVVSG 418


>gi|124265656|ref|YP_001019660.1| UDP-N-acetylmuramate--L-alanine ligase [Methylibium petroleiphilum
           PM1]
 gi|166224702|sp|A2SCY6|MURC_METPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|124258431|gb|ABM93425.1| UDP-N-acetylmuramate--L-alanine ligase [Methylibium petroleiphilum
           PM1]
          Length = 469

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 87/445 (19%), Positives = 144/445 (32%), Gaps = 68/445 (15%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLF 105
           VAI      GH     A   GAEA+V S+A    +       +  + VV   R   L+  
Sbjct: 53  VAI------GHD---AAHIAGAEAVVTSTAVKGDNPEVIAARSRRVPVVP--RAVMLAEL 101

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
                G      +A+ GT GK++  S V  +   +G   +F IG    ++S   ++RL  
Sbjct: 102 MRLKQG------IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANSRLGA 153

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              I +    S  S                       +  +    TN+  DH+D +    
Sbjct: 154 GDYIVVEADESDASFLN--------------------LLPVLSVVTNIDADHMDTYGHDL 193

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                    F   +P    AII  DD   + ++    +        G   +   +  +  
Sbjct: 194 GRLKHAFLEFLHRMPFYGAAIICGDDPGVRSIIP-MISRPVVSYGFGEDAQIRAVDVLAL 252

Query: 285 IHNKQQVTISVEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              + + T            P+    PG   V NAL    +   + +  A V + L    
Sbjct: 253 PGGQMRFTAQRRNGVVMPDLPITLNLPGRHNVLNALAVIAVAAELELPDAPVQKALAAFD 312

Query: 341 VVPGRFEFVGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV----FGCGG 392
            V  RF+  G           +  DY H    +  ++   R    GR +V+         
Sbjct: 313 GVGRRFQRYGELPTPAGGRFTLIDDYGHHPVEMAAVIAAARGAFPGRRLVIAFQPHRYTR 372

Query: 393 DRD--QGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGN 444
            RD  +    +MG      AD  ++ +     E P        +   +  G        +
Sbjct: 373 TRDCFEDFVKVMG-----GADAVLLGEVYAAGEAPIVAADGRALARALRVGGKLEPVFVD 427

Query: 445 RIEAIRTAIE-MLNKQDVLVVAGKG 468
            I A+  AI   +   DV++  G G
Sbjct: 428 EIAAMPQAIADNVQDGDVVITMGAG 452


>gi|309783022|ref|ZP_07677741.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918130|gb|EFP63808.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
          Length = 483

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 135/430 (31%), Gaps = 68/430 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F + LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGRF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALDLA 410
            +  DY H    +   L   R    GR +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATLAAARGAFPGRRLVLSFQPHRFTRTRDCFEDFIKVLGTV----- 388

Query: 411 DIAIVTDDNPRSEDPEKIRAE----------IIHGIPGFIE--KGNRIEAIRTAIEMLNK 458
           D  ++ +     E P  I A           + + I         +  +AI   I+    
Sbjct: 389 DALLLAEVYAAGEPP--IVAADGRALTRALRVANKIEPVFVEQIEDMPQAI---IDAAQD 443

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 444 GDVVITMGAG 453


>gi|255657475|ref|ZP_05402884.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-23m63]
 gi|296449070|ref|ZP_06890860.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296879893|ref|ZP_06903866.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
 gi|296262163|gb|EFH08968.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296429182|gb|EFH15056.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
          Length = 450

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 130/406 (32%), Gaps = 40/406 (9%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV +A    D    + +     +V N   FL            +N +AV+GT GK+S  S
Sbjct: 64  VVYTAAVHPDNEELVAAKEKNKLVMNRATFLGQIMREY-----KNSIAVSGTHGKTSTTS 118

Query: 132 FVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +  I +      +  +G   ++         +        + +    +           
Sbjct: 119 MLSTIFEYADLDPTILVGGNLSMIGGNVKIGNSNHFITEACEYVDSFLNFN--------- 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               N+  DH+DY         A    F +LLP E   II  DD
Sbjct: 170 -------------PKISIVLNVEEDHLDYFSGIDEIK-ASFNKFGKLLPPEGYFIINGDD 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +++        +          I         +             +F   + G  
Sbjct: 216 ENIDDILYDVKATIIKYGRDSDNDAVIKDIHFDNSGHGIFRIEYQGRDLGEFELSVYGLH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YNA  A    +  GID   + ++++    V  RFE  G   +   +  DYAH    L+
Sbjct: 276 NIYNASSAIMAALVSGIDLETIRKNIKIYKGVGRRFETKGY-YKNALVVDDYAHHPTELK 334

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE-DPEK 427
             L   + +    +  +F       + K  ++G+ +     AD  I+TD     E DP  
Sbjct: 335 ATLAAAKKLKKSTLWCIF-QPHTYTRTK-SLLGEFSEAFYAADKVIITDIYAAREKDPGD 392

Query: 428 I-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I       ++       I      + ++   E +   D+++ AG G
Sbjct: 393 IHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRENVKDNDLVITAGAG 438


>gi|218778063|ref|YP_002429381.1| FolC bifunctional protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759447|gb|ACL01913.1| FolC bifunctional protein [Desulfatibacillum alkenivorans AK-01]
          Length = 444

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 116/377 (30%), Gaps = 36/377 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN--------------- 160
             + + GT+GK SVA     I Q +G           +    +                 
Sbjct: 44  QCIHIAGTNGKGSVAQNTASILQAAGYKVGVYTSPHLVHINERFTVNGRPISDDEVLEAY 103

Query: 161 ----------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                     R  T      A AL      GV +  +E    G      + +K      T
Sbjct: 104 QAVKSVSGLERHATFFEYTTAMALYAFDRAGVDYAVMETGMGG-RLDATNVLKPELCIIT 162

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  +H  Y     A    +     +  P              K V K A  +   +  +
Sbjct: 163 NISVEHEMYLGNTIAQIAYEKAGIIK--PGVPVVTGVRQPDAIKAVEKAAAESKAPLYRM 220

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G   K   L+        Q              + +P          A          + 
Sbjct: 221 GKDFKTRRLQGGGFNFYGQDHAWKGLQCRLKGEYQIPNASLALAGCQALT--KRGAKITE 278

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
              +   +    PGR E   T      + +D AH   +++++ K +    + R + V   
Sbjct: 279 EQAKAGLEQVKWPGRLE---TIQESPMVILDGAHNLAAMKVLTKYLAETFADRDVTVITG 335

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
             D    K   M  +   LA   I+T     R+ + +++   I +    F+EK +  EA+
Sbjct: 336 FLDDKPYK--KMLPMLEALAAKIIITRPKIGRAVETKELTPLIRNKKDRFVEKPSVEEAV 393

Query: 450 RTAIEMLNKQDVLVVAG 466
           + A+E     DV+VVAG
Sbjct: 394 KYALENARDTDVIVVAG 410


>gi|323487300|ref|ZP_08092600.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
 gi|323399345|gb|EGA91743.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
          Length = 459

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 139/427 (32%), Gaps = 47/427 (11%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  G +A+V ++A   +D    +      + + +  + L               +A+ GT
Sbjct: 66  IKDGIDAVVYTAAI-HEDNPEFMEVKRRGIPMMSRAELLGQMMKNYRE-----AIAIAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V +I   +  ++  I     ++S   + R+  P          +  ++   
Sbjct: 120 HGKTTTTSMVTEIFMEA-DNNPTISVGGILNSIGGNIRVGGPE---------FFVTEACE 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + +   S                    N+  DH+D+ +       +  R F E +P+   
Sbjct: 170 YTNSFLS-----------FYPTMAVILNIEEDHLDFFKDIDDIRRS-FRQFIEKVPENGT 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I+       +E+   A        +                            K     
Sbjct: 218 IIMNGTIENWRELTAGAAGKVVTFGNSKENDYSFDAVVYDEYARPSFDLYIKGEKKERIS 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  VYNAL A  + +  G         L K      RFE  G   +G  I  DYA
Sbjct: 278 LGVQGEHNVYNALGAIAVAMESGAGLEAAGRGLLKFTGTNRRFEKKG-ELKGITIIDDYA 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +E  LK        RI   F      R +       + AL LAD  ++TD  P  
Sbjct: 337 HHPQEIEATLKAAENYPHKRICCAFQPHTYTRTKAFMKEFAQ-ALSLADCVMLTDIYPAR 395

Query: 423 E------DPEKIRAEII-HGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           E          I A +   G+  +      +  + I   +E   + D+L+  G G     
Sbjct: 396 ETDTLGVSSADIVALLKEKGVDAWYLPTFDDMEKFI---LENCTQGDLLITMGAGD---- 448

Query: 474 IVTNGEK 480
           IV  GE+
Sbjct: 449 IVKVGEE 455


>gi|254515243|ref|ZP_05127304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
 gi|219677486|gb|EED33851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
          Length = 456

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 111/350 (31%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++ KS+V   +  + Q +G  +   G                   + L    
Sbjct: 117 APVIGITGSNAKSTVTEMLGAMVQAAGRRTAVGGNLGVP-------------ALDLLDDQ 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +           +E SS  L+  R   + L   +  NL  DH+D H +   Y  AK    
Sbjct: 164 TE-------FYVLELSSFQLE--RAGPLNLEVATVLNLTPDHLDRHGSMPLYHQAK---- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +       +   DD  +   +      G R +S       +    +  +  +Q +   
Sbjct: 211 HRIFNGCRAVVFNVDDPLTIPPLAA----GRRQVSWRMGEPELTGFGLRLVDGEQMIVEG 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         LPG   + NAL A  L  AI +    +L  L     +  R E V     
Sbjct: 267 FEPLMRADEVSLPGRHNLANALAALALGAAIDLPRDAMLSVLRSFKGLEHRCELVLEREG 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A    +       I  + +   +++   G D+    R +   +A    ++ +
Sbjct: 327 VRWINDSKATNVGAALA---AINGLGAEHRLILIAGGRDKGADFRSLAPAVAA-HCEVVL 382

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       E  + I   +       I       A+  A       D++++
Sbjct: 383 LI-----GEAADGIATALGASCDTVI-AETLEHAVELAAARARSGDIVLL 426


>gi|218290680|ref|ZP_03494771.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239345|gb|EED06543.1| cyanophycin synthetase [Alicyclobacillus acidocaldarius LAA1]
          Length = 881

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 106/365 (29%), Gaps = 25/365 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GK++ A  V      +G +                 R  T  P+     LS  
Sbjct: 483 VSITGTNGKTTTARLVAHGFAVAGKTVGLTTTGGVYIGGECVCRGDTTGPMSARLVLS-- 540

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V    +E +  G+ +  L       G  TNL  DH+           A ++     
Sbjct: 541 -HPRVEVAVLETARGGIVRGGLAYDVADVGVITNLSLDHVGQDGLDSIDDIAFVKALVGE 599

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             ++  A++   D      +     A   ++S       +                 +  
Sbjct: 600 CVRDDGAVVLNADDPRVLALAPRFRAPLVLVSQVPNNPHVARHVQAGGTAVVASDGVLYE 659

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--------------VVP 343
                  P+ G  Q+   L             A        L                  
Sbjct: 660 WQGGAQRPIIGVAQIPICLGGLARFHVENAALAAAAMRAAGLPRSTVAKALATFLPEQNT 719

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E       G R+ +DY H       + + ++ +   R + V G  GDR        G
Sbjct: 720 GRLEMY-VLPNGARVVLDYGHNPAGFREVGRWLQALACRRRVGVVGVPGDRADHVVEEAG 778

Query: 404 KIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEML 456
           +      D  IV +D + R   P +I   +   I             +  EA   A+  L
Sbjct: 779 RALAPWFDEFIVKEDADLRGRAPGEIARLLSSSIARTCPDKKVEVILDEREAALFAVRGL 838

Query: 457 NKQDV 461
             +DV
Sbjct: 839 GAEDV 843


>gi|241664306|ref|YP_002982666.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12D]
 gi|240866333|gb|ACS63994.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12D]
          Length = 483

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 135/430 (31%), Gaps = 68/430 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F + LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR-----GG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGLHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGRF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALDLA 410
            +  DY H    +   L   R    GR +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATLAAARGAFPGRRLVLSFQPHRFTRTRDCFEDFIKVLGTV----- 388

Query: 411 DIAIVTDDNPRSEDPEKIRAE----------IIHGIPGFIE--KGNRIEAIRTAIEMLNK 458
           D  ++ +     E P  I A           + + I         +  +AI   I+    
Sbjct: 389 DALLLAEVYAAGEPP--IVAADGRALTRALRVANKIEPVFVEQIEDMPQAI---IDAAQD 443

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 444 GDVVITMGAG 453


>gi|15675424|ref|NP_269598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes M1 GAS]
 gi|71911066|ref|YP_282616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS5005]
 gi|81174547|sp|P0C0D8|MURD_STRP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13622612|gb|AAK34319.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71853848|gb|AAZ51871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS5005]
          Length = 452

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 134/417 (32%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 108 FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 155

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 156 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 205 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTKATVIPFSTQKVVDGAYLKDGILY--- 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 261 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 316 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 372 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|34580726|ref|ZP_00142206.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia sibirica 246]
 gi|28262111|gb|EAA25615.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia sibirica 246]
          Length = 485

 Score = 66.5 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 63/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-----PI 401
             V        I  DYAH    ++  L   + I + +   V          +        
Sbjct: 330 TKVA-EYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
           M   A   ADI  +TD     E+P          +KI     H    F+ + +  +A+  
Sbjct: 389 MFCFAD--ADILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELD--DAVGV 444

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I+     D++++ G G+
Sbjct: 445 IIDNAASGDMIIMMGAGN 462


>gi|325846545|ref|ZP_08169460.1| bifunctional protein FolC [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481303|gb|EGC84344.1| bifunctional protein FolC [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 424

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 4/193 (2%)

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                 ++                  D    L G+ Q+YNA  A  L      D  L   
Sbjct: 221 HEFSFDEITIKSQNTGYNQFDFKGYSDVKTSLIGKIQIYNACNAINLLDYFKEDFDLDDN 280

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +++          +   S   R+ +D +H   S + +L ++      R+IV F    D+
Sbjct: 281 IIKEGIYKSKNPGRLQMISTKPRVLLDGSHNRESFDALLDSLSLFNYNRLIVGFSVLKDK 340

Query: 395 DQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +      + K   +++   +VT  DNPR+ + ++++  +           N I A     
Sbjct: 341 EY---KYIIKKLSEISSEIVVTSVDNPRAFEAKELKEIVKKDFSKVRAIENNISAYEYTK 397

Query: 454 EMLNKQDVLVVAG 466
                 D+++  G
Sbjct: 398 SRAKNDDLVLWCG 410


>gi|332968967|gb|EGK08011.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella kingae
           ATCC 23330]
          Length = 443

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 124/362 (34%), Gaps = 42/362 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++ A  L G  P+ I+A+TG++GK++  S V  +CQ+SGL +   G   T    A   R 
Sbjct: 97  AILADLLRG-QPDKIIAITGSNGKTTTTSLVGHLCQQSGLDTVIAGNIGTPVLEAWLERR 155

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
             P                     +E SS  L+    D +   A +  N+  DH+D +  
Sbjct: 156 GKP----------------ADVWVLELSSFQLET--TDCLNATAATCLNISEDHLDRYDD 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y +AK     + +       +   D      MKR H           Q   +     
Sbjct: 198 LLDYAHAK-----DRIFHGDTVQVLNADDVFCRAMKRDHRTVHYFSLTQSQDYHLDAATA 252

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              H +  +             PL G     N L A  LC +IG++   +L H++    +
Sbjct: 253 QLKHRQDNLLP-------QNAIPLQGSHNAANVLAALALCESIGMERETLLCHVQTFKGL 305

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E VG  +    I         +    +  +R       I +   G  + Q   P+ 
Sbjct: 306 PHRVEKVGEKNGVVFIDDSKGTNVGATVAAIAGLRE-----KIWLIAGGMGKGQNFTPLR 360

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +I  ++       I      +A++ A       +++
Sbjct: 361 -DVLQGKAGAVFLI-----GVDAPQIAQDLDGCGVDLIFCDTLPQAVQQAFSAAKSGEIV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|325275015|ref|ZP_08141009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
 gi|324099854|gb|EGB97706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
          Length = 65

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
                   R  AI   I      DV+V+AGKGHE    + NGE+    D     + L
Sbjct: 2   AEVEFIAGRGAAIAHLIATAAADDVIVLAGKGHEDYQEI-NGERHDFSDLIEAEKAL 57


>gi|260424625|ref|ZP_05732710.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
 gi|260402591|gb|EEW96138.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
          Length = 456

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 93/277 (33%), Gaps = 15/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +      A    N+  DHI+ H T + Y  AK R+FE +       +  
Sbjct: 167 EVSSFQLE--FIKDFCPKAAVILNITPDHIERHHTMERYVAAKARIFENMGKDNCLLLNA 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+     + K  +   C         +   L     +  ++   + V          L 
Sbjct: 225 EDEYTPILMKKAKNTTVCLFSISRDVEEGACLNGADLVIKRRGKVLKV---AGIDELQLT 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L AA L    GI    + + + +   +P R EFV             A  ++
Sbjct: 282 GNQNYQNVLAAAFLAYEGGIPLEAIHDGIIEFKGLPHRIEFVRELDGVSYYNDSKATNTD 341

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R I++   G D+       M  +   +  + ++ +   R +D  +
Sbjct: 342 AAIKGMETF-----NRPIILIAGGYDKHTKLDKFMKTVKARVKCLILLGNAAARFKDEAE 396

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  GI   +   +   A+     +    DV+++
Sbjct: 397 -----KAGIKTIVLADDMRGAVEKGKSIACSGDVVLL 428


>gi|229270471|ref|YP_975688.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           FAM18]
 gi|229597116|ref|YP_001599824.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           053442]
 gi|189029221|sp|A9M2H2|MURC_NEIM0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325198895|gb|ADY94351.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           G2136]
 gi|325202766|gb|ADY98220.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240149]
          Length = 468

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 112

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 113 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 171 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 211 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 269 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 328

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 329 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 387

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 388 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 447

Query: 464 VAGKG 468
             G G
Sbjct: 448 NMGAG 452


>gi|94988878|ref|YP_596979.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS9429]
 gi|94992769|ref|YP_600868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS2096]
 gi|122063265|sp|Q1JAT4|MURD_STRPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063266|sp|Q1JKY4|MURD_STRPC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94542386|gb|ABF32435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS9429]
 gi|94546277|gb|ABF36324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS2096]
          Length = 452

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 134/417 (32%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 108 FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 155

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 156 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 205 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTKATVIPFSTQKVVDGAYLNDGILY--- 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 261 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 316 RVGQIKDITFYNDSKSTN---ILATKKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  N  EA   A ++    D +++
Sbjct: 372 -LKQMIIL------GESAERMKRAANKAEVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|118595671|sp|Q2G997|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 443

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 119/405 (29%), Gaps = 73/405 (18%)

Query: 67  GAEAIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G   +VVS    L           +  P++   +      LFA       P  ++ +TGT
Sbjct: 64  GFAGVVVSPGVPLNRHPIADHARAAGVPVIG--DIE----LFAQARADLPPHRVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+    V  IC  +GL +   G         +                         
Sbjct: 118 NGKSTTTMLVHHICAAAGLPARLGGNIGLPILGQEPLPEG-------------------G 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +     +  NL  DH+D +     Y  A       +   +  
Sbjct: 159 VYVLELSSYQIDL--TQSLACDVAALINLSPDHLDRYDGFAGYA-ASKARLFAMQRADQH 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+    D ++ E+ + A                        +H  Q   +  + +     
Sbjct: 216 AVFGCGDEHTLEIAREAS----------------ATHDTGFVHVVQPSALHGQLEWPSLQ 259

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P      + NA +A  +   +GI   +    L     +P R E V   +    +    A
Sbjct: 260 GPH----NLQNAAIAVEIARQLGIAEDIWRSALASFVGLPHRMERVAEANGVLFVNDSKA 315

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI----VTDDN 419
               S    L     I       + G     D               D  +    + +  
Sbjct: 316 TNPASTAPALGAYPRIHW-----ILGGLPKSDNL------DECAPYFDHVVAAYTIGEAG 364

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           PR        AEI+  +          +A+R A+E     DV+++
Sbjct: 365 PRF-------AEILEPVMPVTRSEMLCDAVRQAMEAAQPGDVVML 402


>gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
 gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
          Length = 445

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 144/418 (34%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A++ G + + +S   S +             V+ +         
Sbjct: 47  GKIFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADVVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKDKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC AIG+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLISTQDIPLQGLHNAANVMAAVALCEAIGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|94987547|ref|YP_595480.1| UDP-N-acetylmuramate--L-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224699|sp|Q1MPB8|MURC_LAWIP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94731796|emb|CAJ55159.1| UDP-N-acetylmuramate-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 453

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/277 (21%), Positives = 107/277 (38%), Gaps = 16/277 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  I    TN+  DH+DY+++ +   +A +     +       +   DD   + V+ R +
Sbjct: 171 LLPIINVVTNIDLDHLDYYRSFEEIEHAFVTFMNNVPFYGMNVV-CGDDPGVQRVLPRVN 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                         +  + +   I+  + +       +     P  G+  + NAL A G+
Sbjct: 230 RQVITYGFESSNHIWAEIIECGIINRFKVIAHGECLGEVILTQP--GKHNILNALAAIGV 287

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + +GI     +E L     V  RFE+ G    G  +  DY H    +   L+  R +  
Sbjct: 288 ALEVGISPKCCIEGLANFKGVGRRFEYKG-EKNGITVIDDYGHHPIEVAATLETARKVFP 346

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDPE-KIRAE-IIHGIP 437
            R IVV      R    + + G+    L+  D  ++T+  P  E P   I ++ +  GI 
Sbjct: 347 DRRIVV-AFQPHRFSRTQALFGEFCQVLSTVDKLLLTEIYPALEKPIPGINSQNLAQGIQ 405

Query: 438 GFIEK-----GNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              +       + I+A+  A+   L   DVL+  G G
Sbjct: 406 QISKIDVTYYPD-IDAVFHALPHVLCAGDVLITLGAG 441


>gi|299529566|ref|ZP_07043003.1| cyanophycin synthetase [Comamonas testosteroni S44]
 gi|298722429|gb|EFI63349.1| cyanophycin synthetase [Comamonas testosteroni S44]
          Length = 856

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 13/234 (5%)

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A +               +            + +++     +  +     S+  +D   
Sbjct: 607 VAAMAHVCPGKVIFFAADRHHPVMATHRAQGSRVVYVDGDAIVAAEGSWRESIALRDIPL 666

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRI 358
                  FQV N + + G   A G+    +   L          P RF     + +G  I
Sbjct: 667 TRNGTITFQVENVMASIGAAWAAGLPWQTIRRGLAGFLNDSDNAPARFNV--MDYKGATI 724

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H  +++  + + +  + + R  VV    GDR         +I   + D  ++  D
Sbjct: 725 IADYGHNPDAIRALSQAVEAMPAKRRSVVISGAGDRRDQDITEQTQILGKVFDDVVLYQD 784

Query: 419 NP-RSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVA 465
              R     ++ A +  G+ G        E      AI  A+  L   D+ +V 
Sbjct: 785 ACQRGRVDGEVLALLKKGLEGAPRTSYSTEIHGEFLAIDHALARLQPGDLCLVL 838


>gi|264676745|ref|YP_003276651.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
 gi|262207257|gb|ACY31355.1| cyanophycin synthetase [Comamonas testosteroni CNB-2]
          Length = 856

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 13/234 (5%)

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A +               +            + +++     +  +     S+  +D   
Sbjct: 607 VAAMAHVCPGKVIFFAADRHHPVMATHRAQGSRVVYVDGDAIVAAEGSWRESIALRDIPL 666

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRI 358
                  FQV N + + G   A G+    +   L          P RF     + +G  I
Sbjct: 667 TRNGTITFQVENVMASIGAAWAAGLPWQTIRRGLAGFLNDSDNAPARFNV--MDYKGATI 724

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H  +++  + + +  + + R  VV    GDR         +I   + D  ++  D
Sbjct: 725 IADYGHNPDAIRALSQAVEAMPAKRRSVVISGAGDRRDQDITEQTQILGKVFDDVVLYQD 784

Query: 419 NP-RSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVVA 465
              R     ++ A +  G+ G        E      AI  A+  L   D+ +V 
Sbjct: 785 ACQRGRVDGEVLALLKKGLEGAPRTSYSTEIHGEFLAIDHALARLQPGDLCLVL 838


>gi|160901141|ref|YP_001566723.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
 gi|160366725|gb|ABX38338.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
          Length = 875

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 74/234 (31%), Gaps = 13/234 (5%)

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A + +             +            + +++     +  +     ++  ++   
Sbjct: 623 VAAMASTSPGKVIYFAADRHHPVMATHRAQGNRVVYVDGDSIVAAESSWRETIALREIPI 682

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGGRI 358
                  FQV N + A      +G+    +   L          PGRF     + RG  +
Sbjct: 683 TRNGTISFQVENVMAAIAAAWGVGMPWQTIRRGLAGFVNDSDNAPGRFNV--MDYRGATL 740

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DY H  +++  +++ +  + + R  VV    GDR         +I     D  I+  D
Sbjct: 741 IADYGHNPDAIRALVQAVDAMPAQRRSVVISGAGDRRDQDITEQTQILGKAFDDVILYQD 800

Query: 419 NP-RSE---DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              R     +   +  + + G P      +      AI  A+  L   D+ +V 
Sbjct: 801 ACQRGRADGEVLALLQQGLQGAPRTDYVTQIQGEFNAIDHALARLTPGDLCLVL 854


>gi|168183481|ref|ZP_02618145.1| bifunctional protein FolC [Clostridium botulinum Bf]
 gi|182673315|gb|EDT85276.1| bifunctional protein FolC [Clostridium botulinum Bf]
          Length = 429

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 115/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +    + SG                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISTALKESGYKVGMYTSPYIEEFEERIQINGHNITKEDLGYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    +        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEEITYEKAGIIKKAPVIMYPQKKEVKKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CELIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKLGIKIEKIHIISALKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E+P+++   ++     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVAPHNDRGENPKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A       D++++ G
Sbjct: 389 CEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|312111768|ref|YP_003990084.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
 gi|311216869|gb|ADP75473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
          Length = 451

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 117/362 (32%), Gaps = 43/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + + ++ +         G     +         
Sbjct: 104 ELAYHISEAP---FIGITGSNGKTTTTTLIYEMLREGEKRPLLAGNIGVAACEV------ 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          ++    +  E SS  L   R    +       N+   H+DYH T+
Sbjct: 155 ------------AQKAEANNWLVTELSSFQLAGIR--DFRPHISVLLNIFDAHLDYHGTK 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK  +F+    ++  A++ ADD     + + +        +        ++K   
Sbjct: 201 EAYAQAKANIFKNQTNED-YAVVNADDELVMRLAENSCAQKVIFSATKKLDSGAYIKDGW 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N + V    +         LPG+  + N L A  +    G+D+  + + L     V 
Sbjct: 260 IYWNDEAVIAVSDIV-------LPGKHNLENILAAVAVAKLTGVDNKAIAKVLTTFTGVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++ T           A    + +  L           +++   G DR      ++ 
Sbjct: 313 HRLQYIATIDGRKFFNDSKATNILATQRALSAF----EKDSVILLAGGLDRGNEFDALLP 368

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +        I+       +   KI       GI       N  +A+  A  +    DV+
Sbjct: 369 YL--HNVKAIIL-----FGQTAAKIARVAKQAGIETIEYVDNVEKAVPVAYRLSEPGDVI 421

Query: 463 VV 464
           ++
Sbjct: 422 LL 423


>gi|6634595|emb|CAB64488.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634691|emb|CAB64540.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + E ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQAVGAKNDVSLFAEAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA   +  
Sbjct: 54 FIERAFENGAAVTLSE 69


>gi|33593953|ref|NP_881597.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis Tohama
           I]
 gi|44888182|sp|Q7VUQ4|MURC_BORPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33564027|emb|CAE43293.1| UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama
           I]
 gi|332383371|gb|AEE68218.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS]
          Length = 468

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 94/439 (21%), Positives = 147/439 (33%), Gaps = 65/439 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH     A   GA AIV S+A +  +          I VV   R   L+           
Sbjct: 56  GHDRANVA---GAGAIVTSTAVAGDNPEVLAARAARIPVVP--RAVMLAELMRL------ 104

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +  +AV GT GK++  S V  +    G   +F IG    ++S   + RL     I +   
Sbjct: 105 KRGIAVAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGQGEYIVVEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A   +    
Sbjct: 163 ESDASFLN--------------------LLPVMAIVTNIDADHMDTYGHDVARLKSAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    AI+ ADDA  +E+M     +             +  + V A   + + T+
Sbjct: 203 FTQRLPFYGSAILCADDANVREIM--PFVSRPITTYGLSPDAQVCAQDVQADGTRMRFTV 260

Query: 294 SVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +D           LPG   V NAL A  +   +G+D A + E L     V  RF  
Sbjct: 261 QRRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQ 320

Query: 349 VGTNSRG-------GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-- 399
            G              +  DY H    +   L   R     R IV+        + +   
Sbjct: 321 WGDLPVPAAHGGGIFTLVDDYGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCF 380

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIE---AI 449
               ++    AD  ++T+     E P        +   +   G    +   +  E   AI
Sbjct: 381 EDFVRVLGS-ADGVLLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAI 439

Query: 450 RTAIEMLNKQDVLVVAGKG 468
              ++ +   DV+VV G G
Sbjct: 440 ---LDFVRDGDVVVVMGAG 455


>gi|226358157|ref|YP_002787896.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319800|gb|ACO47794.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 917

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 12/137 (8%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQ 396
             + PGR      +    R+ +DYAH    +E + + I  +    GR+I V G  GDR  
Sbjct: 747 FELSPGRLNL--YDGHPFRVLLDYAHNPTGMEHLRELIGHLRPPKGRVIGVMGVAGDRRD 804

Query: 397 GKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKIRA-EIIHGIPGFI--EKGNRIEA 448
                MG++A    D+ IV +D  R      E    I    +  G+         +   A
Sbjct: 805 EDIVRMGELAAQAFDVLIVREDELRRGRAVGEGARLIEEGALRGGLDSAHMQTILDEPSA 864

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A+ +    D++V+ 
Sbjct: 865 VDAALRLAVPGDLVVLL 881


>gi|157963624|ref|YP_001503658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           pealeana ATCC 700345]
 gi|157848624|gb|ABV89123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           pealeana ATCC 700345]
          Length = 439

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 61/395 (15%), Positives = 129/395 (32%), Gaps = 56/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   + +     +  +  I V+ +         +R   +    ++ +TG++GK++V 
Sbjct: 70  IVISPGIACETPEVRVAFDMGIEVIGDV-----ELFARAVAQTSAKVIGITGSNGKTTVT 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + SG S    G                   + L      L         +E S
Sbjct: 125 TLVGEMAKASGSSYAVGGNIGVP-------------ALDLLLEPKDL-------YVLELS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      ++ +A +  N+  DH+D +   ++Y  AK++L+E+              
Sbjct: 165 SFQLET--TYSLQCVAATCLNISEDHMDRYSDLESYRQAKLKLYEQSKMAVFNREDTLTL 222

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +    +            G  G  I       +       +              G  
Sbjct: 223 PNNPTNQQSFGLDAPEGDDWGVSGGMIVQGSSQIMPISDVALV--------------GSH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N + A  L  A GI     +E  +    +  R E V        +    A    +  
Sbjct: 269 NLANIIAAMALTTAAGIKRECQIEVAKTFLGLAHRCEVVADIDGVTYVNDSKATNIGATV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  +         ++   GGD        +  +   ++ + ++  D            
Sbjct: 329 AAIDGLSEHLGE---LILIAGGDGKGADFKPLEPVLEKVSQLIVLGKDG----------- 374

Query: 431 EIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + I G+ P  I+  N +EA+  A E+    D++++
Sbjct: 375 DKIAGLKPEAIKVANMVEAVAKAHELATAGDIVIL 409


>gi|323694259|ref|ZP_08108435.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
 gi|323501732|gb|EGB17618.1| UDP-N-acetylmuramate-alanine ligase [Clostridium symbiosum
           WAL-14673]
          Length = 459

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 138/427 (32%), Gaps = 47/427 (11%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  G +A+V ++A   +D    +      + + +  + L               +A+ GT
Sbjct: 66  IKDGIDAVVYTAAI-HEDNPEFMEVKRRGIPMMSRAELLGQMMKNYRE-----AIAIAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V +I      ++  I     ++S   + R+  P          +  ++   
Sbjct: 120 HGKTTTTSMVTEIF-LEADNNPTISVGGILNSIGGNIRVGGPE---------FFVTEACE 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           + +   S                    N+  DH+D+ +       +  R F E +P+   
Sbjct: 170 YTNSFLS-----------FYPTMAVILNIEEDHLDFFKNIDDIRRS-FRQFIEKVPENGT 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I+       +E+   A        +                            K     
Sbjct: 218 IIMNGTIENWRELTAGAAGKVVTFGNSKENDYSFDAVVYDEYARPSFDLYIKGEKKERIS 277

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  VYNAL A  + +  G         L K      RFE  G   +G  I  DYA
Sbjct: 278 LGVQGEHNVYNALGAIAVAMESGAGLEAAGRGLLKFTGTNRRFEKKG-ELKGITIIDDYA 336

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +E  LK        RI   F      R +       + AL LAD  ++TD  P  
Sbjct: 337 HHPQEIEATLKAAENYPHKRICCAFQPHTYTRTKAFMKEFAQ-ALSLADCVMLTDIYPAR 395

Query: 423 E------DPEKIRAEII-HGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           E          I A +   G+  +      +  + I   +E   + D+L+  G G     
Sbjct: 396 ETDTLGVSSADIVALLKEKGVDAWYLPTFDDMEKFI---LENCTQGDLLITMGAGD---- 448

Query: 474 IVTNGEK 480
           IV  GE+
Sbjct: 449 IVKVGEE 455


>gi|260434248|ref|ZP_05788219.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260418076|gb|EEX11335.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 469

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 141/418 (33%), Gaps = 55/418 (13%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A      +         P++   +    L            ++ +A+ GT G
Sbjct: 71  AAVVVVSTAIKPGNPELDGARALGLPVVRRADMLAELMRL---------KSNIAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + ++    G     +     I ++  + R+                      +
Sbjct: 122 KTTTTTMMAELMVA-GDFDPTVINGGVIHAYGSNARMGQGE-----------------WM 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++         A    F   +P    A+
Sbjct: 164 VVEADESDGSFNRLPATI---AIVTNIDPEHMEHWGDFDRLR-AGFHDFVSNIPFYGLAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---F 302
              D A  + ++ R  +   R      Q        +          I ++ +D      
Sbjct: 220 CCTDHAEVQALVGRITDRRVRTYGFNAQADV-RAVNLTYKGGIAHFDIHLQYEDTVIEGC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+ +A + + L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAVAVARHLGMKTAQIRDALANFGGVNRRFTKVG-EVNGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    +  +LK  R  T GR+I V      R      +          AD+  + +   
Sbjct: 338 GHHPVEIAAVLKAARQATEGRVIAV--HQPHRYSRLSNLFEDFCACFNDADVVAIAEVFS 395

Query: 421 RSEDP--EKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             EDP     R +++ G+           +++G+     R   E     D++V  G G
Sbjct: 396 AGEDPIEGASRDDLVQGLIRHGHRHARALLDEGDLE---RLVREQARPGDMVVCLGAG 450


>gi|269127135|ref|YP_003300505.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
 gi|268312093|gb|ACY98467.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
          Length = 471

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 18/177 (10%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG    +NA  A  +   +G D A + + L        R E  G  + G +++  YAH  
Sbjct: 284 PGRHYAHNATAALAVARLLGCDFATIRDGLASFTGSMRRLERKG-EAGGVQVFDSYAHHP 342

Query: 367 NSLEMILKNIRTI--------TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
             L   L+  R           +GRI+ VF      R +      G+ AL LAD+A+V D
Sbjct: 343 TELTADLQATREYLDQLAAEGRTGRIVAVFQPHLYSRTRFFATEFGR-ALGLADVAVVLD 401

Query: 418 DNPRSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                EDPE       I   +  G         R +  +   E+    D+++  G G
Sbjct: 402 VYGAREDPEPGVSGRLIADAVPEG-TRVEYVPVREQVPQVVAELARPGDLVLTLGAG 457


>gi|302541868|ref|ZP_07294210.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459486|gb|EFL22579.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 485

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 85/417 (20%), Positives = 144/417 (34%), Gaps = 49/417 (11%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A ++VVSSA    +    A      P++   +    L      + G  P   +AV GT G
Sbjct: 72  ATSVVVSSAIRADNLELVAARERGIPVVHRSDALAAL------MDGHRP---IAVAGTHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +    +                S+     L  P         +      +   
Sbjct: 123 KTTTTSMLAVSLR----------TLGLDPSYVIGGDLDAPGS------SAEHGGGEIFVA 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + S     ++             N+  DH   + +    +++     E + P  +  I
Sbjct: 167 EADESDRSFHKY-----APEVAIILNVELDHHANYASMDEIYDSFRTFVERVRPGGTLVI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV----EGKDF 300
               D   +   + A   G RVL+ G      + +  V       +VT+       G + 
Sbjct: 222 SADHDGARELTAQLAGREGLRVLTYGEAADADVRVLDVVPHGLTSEVTVRFAEALGGGEI 281

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
            F   +PG    +NA+ A     A+ + +  +   +     V  R +  GT +   ++  
Sbjct: 282 TFTVSVPGRHYAHNAVAALAAGAALDVPARDLAPAIASYTGVKRRLQLKGTAAE-VQVID 340

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            YAH    +   L+ IR     GR++VVF      R Q     MG+ AL LAD ++V D 
Sbjct: 341 SYAHHPTEIAADLEAIRGGAGEGRVLVVFQPHLFSRTQELGAEMGE-ALALADASVVLDI 399

Query: 419 NPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            P  EDP      + +     H         +R  AI   I  M    D+++  G G
Sbjct: 400 YPAREDPVPGITSDLVIDAARHHGADVTAAHDRS-AIPGLIAGMAKPGDLVLTMGAG 455


>gi|229586496|ref|YP_002844997.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia africae ESF-5]
 gi|259509780|sp|C3PMU4|MURC_RICAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|228021546|gb|ACP53254.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia africae ESF-5]
          Length = 485

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 142/438 (32%), Gaps = 63/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA + ++      +    PI+   +    L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINPKNPEIKEALERKIPIIRRADMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYRDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-----PI 401
             V        I  DYAH    ++  L   + I + +   V          +        
Sbjct: 330 TKVA-EYNNASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDF 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRT 451
           M   A   ADI  +TD     E+P          +KI     H    F+ + +  +A+  
Sbjct: 389 MFCFAD--ADILYITDIYAAGENPIEGITGRNLVDKITKRKHHDKANFLAELD--DAVGV 444

Query: 452 AIEMLNKQDVLVVAGKGH 469
            I+     D++++ G G+
Sbjct: 445 IIDNAASGDMIIMMGAGN 462


>gi|6634661|emb|CAB64528.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA   +  
Sbjct: 54 FIERAFENGAAVTLSD 69


>gi|302871367|ref|YP_003840003.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574226|gb|ADL42017.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 455

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 132/382 (34%), Gaps = 35/382 (9%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
             +     +L      + +            +NI+A+TGT+GK++  + V +I ++    
Sbjct: 79  VPLSKRIVVLAHKKGVEVIGEIELAYRFCKSKNIVAITGTNGKTTTTTLVGEILKKQHDD 138

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G          +                       T   +E SS  L+   +   K
Sbjct: 139 VVVCGNIGLPFIDTVETS------------------SENTIFVLEISSFQLET--IKYFK 178

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
              G   N+  DH++ H T + Y  AKMR+FE +       + Y +      +     N 
Sbjct: 179 PKVGCILNITPDHLNRHATMENYVKAKMRIFENIDEAGYTVLNYDNGITRDLIGLAKRNV 238

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                +  +    + +++          T  V  KD  F   +PGE  + NAL A    +
Sbjct: 239 IVFSKNKNHFKNMVFVEENKIYFTFGGKTQEVMKKDEIF---IPGEHNLENALAAIACTL 295

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             G+    + + L+    V  R EFV   +            +++ E  +    +     
Sbjct: 296 PFGVAKDTIKDVLKTFKGVEHRIEFVTEINGIKFYNDSKGTNTDAAEKAISAFES----- 350

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEK 442
            I++   G D+ +      G IA  +  + ++       +  +KI  E+   G   F   
Sbjct: 351 PIILIAGGYDKGESFERFAGLIAKKVKKVFLL------GQTKQKIANELEKIGYQNFELV 404

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +  EA+  + E     DV+++
Sbjct: 405 SSLKEAVEKSFEYAKSGDVVLL 426


>gi|72161515|ref|YP_289172.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
 gi|109892752|sp|Q47QW8|MURC_THEFY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71915247|gb|AAZ55149.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
          Length = 472

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 98/286 (34%), Gaps = 25/286 (8%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       TN+  DH+D +   +   +        +       ++  DD  ++ V + A
Sbjct: 180 MLSPRVAVITNVEADHLDNYGDLEEIHDKFA---AFIGRVSETVVVGVDDPGARRVAEVA 236

Query: 261 HNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318
              G +VL+ G        ++ +         TI     D      PLPG     NA  A
Sbjct: 237 RQRGLKVLTYGEADTADYRVRDITVDGFTTMFTIDPPTGDPVHCTLPLPGRHNTLNAAAA 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI------ 372
             +   IG D  + +E L +      RFEF G  + G  +Y  YAH    +         
Sbjct: 297 VAVADTIGYDPEVAVEGLAEFAGAARRFEFKG-EANGVSVYDSYAHHPTEIAADLDAARA 355

Query: 373 ---LKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-- 426
               +  +   +GRI+V+F      R +             AD  +V       EDPE  
Sbjct: 356 ALDSQAAKGGKAGRIVVLFQPHLYSRTRIFAEEFAAALTK-ADEVVVLGIYAAREDPEPG 414

Query: 427 ----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                I   I  G      + +R  A+   + +    D+++  G G
Sbjct: 415 VTAELITERI--GHDRVYYRPDRDAAVECVVSVAQPGDIVLTMGAG 458


>gi|6634688|emb|CAB64538.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I  G +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQVVGAKNDISIFEDTRLEKAEFDSRLIGTGDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA   +  
Sbjct: 54 FIERAFENGAAVTLSD 69


>gi|218899066|ref|YP_002447477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228902418|ref|ZP_04066572.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
 gi|228966866|ref|ZP_04127910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|226711880|sp|B7IUS2|MURD_BACC2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218545114|gb|ACK97508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228792965|gb|EEM40523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857162|gb|EEN01668.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
          Length = 450

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 126/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKEIPIVTEV-----ELAYRISKAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA   E+            +         +K               E     
Sbjct: 219 YSVI-NADDADVMELSADTKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A     + DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEDDVVLL 422


>gi|296394968|ref|YP_003659852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Segniliparus
           rotundus DSM 44985]
 gi|296182115|gb|ADG99021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Segniliparus
           rotundus DSM 44985]
          Length = 491

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/487 (13%), Positives = 139/487 (28%), Gaps = 52/487 (10%)

Query: 6   LIYKDFPELINQLSIFPMQWRERK--INE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +I     ++   +     Q  + +  +   +  DSR +  G +F+A+ G + DG      
Sbjct: 1   MIPWTLRQVAAAVGGKLHQVPDPEQLVTAPLEHDSRKVVPGGLFLAVPGERTDGR----- 55

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV---------DNTRKFLSLFASRLYGKH 113
                      + A       ++   + P +V+           +R+      + L   +
Sbjct: 56  ------SHAAAAHAAGAVATLSSDPLDVPTVVLGAGPYPTGPQESRRLALAALAALAKAN 109

Query: 114 PENILA-------VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            + ++A       +TG+SGK+S    V Q+    G +    G  +               
Sbjct: 110 AQALVARGLTVVGITGSSGKTSTKDLVTQVLATRGATVGPPGSFNNELGHPWTVLRADQD 169

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
             +L   L+  +   +      A    + Q R+  +  +  +   +     +    +   
Sbjct: 170 TRFLVLELAARTIGHI------AELAQIAQPRIGVVLGVGSAHLGVFGSRENIAIAKGEL 223

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A              A++ ADD     +  R      R              ++  + 
Sbjct: 224 VEAL-----PCADDGGVAVLNADDPLVSAMASRTRARVVRYGMAESADVRAADVRLDPLS 278

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 I+ +G     L              AA         +             P R 
Sbjct: 279 RASFTLITPQGDAPVTLRVHGEHQAHNALAAAAVAAECGLSPAQTAEALSAAQAASPRRM 338

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCG---GDRDQGKRP 400
           +          +   Y     S+   L+ +  +     G    V G     GD       
Sbjct: 339 QVAERADGVVVVNDSYNANPESMRAGLRALVGMAHQCGGASWAVLGQMGELGDDSIVLHD 398

Query: 401 IMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLN 457
            +G+  + L+ D  +V  D  RS         ++ G      +   +   A R     L 
Sbjct: 399 QLGRFVVRLSVDRLVVVGD-SRSAKALH-TGAVLEGSWSGEAVLVPDWQSAARLVAAELG 456

Query: 458 KQDVLVV 464
            +DV++V
Sbjct: 457 PRDVVLV 463


>gi|294628851|ref|ZP_06707411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
 gi|292832184|gb|EFF90533.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
          Length = 473

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 139/413 (33%), Gaps = 55/413 (13%)

Query: 67  GAEAIVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE +V +         F A  R+  P+    +        A RL G      LAVTGT+
Sbjct: 73  GAELVVTAPGWKPDKPLFQAAGRAGVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTN 125

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++    +  I + +GL +  +G                     ++   + L  +    
Sbjct: 126 GKTTTVQMLAAILKAAGLRTAAVGNIG------------------VSLLDAVLGEEKYDV 167

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           ++VE SS+ L       ++  + +  NL  DH+D+H + +AY  A  +       + +  
Sbjct: 168 LAVELSSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRVYEGNRVACV 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-- 302
              AD A    V       GCR +             V       +  ++   K+     
Sbjct: 224 YNVADKATEDLVRAADVEEGCRAVGFTLGTPGPSQLGVVEGLLVDRAFVADRHKNAQELA 283

Query: 303 ---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  P    + NAL AA L  A G+ +A V + L        R   V        + 
Sbjct: 284 EVSDVNPPAPHNIANALAAAALARAFGVPAAAVRDGLRSFTPDAHRIAHVADVDGVAYVD 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A  +++ E  L +  +      IV    G  +      ++   A  L    ++    
Sbjct: 344 DSKATNTHATEASLASYES------IVWIAGGLAKGATFDELVAGAAERLRGAVLI---- 393

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
               D   IR  +    P       +R +      A++ A  +    D +++A
Sbjct: 394 --GADRALIRDALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA 444


>gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|254766034|sp|B9MQ99|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 457

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 134/396 (33%), Gaps = 42/396 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++VS    L      +     I V+          A R      +NI+A+TGT+GK++ 
Sbjct: 71  LVIVSPGVPLSKRPLVLAHKKGIEVIGEI-----ELAYRFCK--SKNIVAITGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V +I ++        G          +                       T   +E 
Sbjct: 124 TTLVGEILKKQYEDVVVCGNIGLPFIDTIETS------------------SEDTIFVLEI 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+   +   K   G   N+  DH++ H T + Y  AKMR+FE +       + Y +
Sbjct: 166 SSFQLET--IKYFKPKIGCILNITPDHLNRHLTMENYTKAKMRIFENIDEMGYTVLNYDN 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +     +     N      +       + ++        +  T  V  KD  F   +PG+
Sbjct: 224 NITRDLIGLAKGNVIVFSKTKTQFENVVFVENDVIYFTFEGKTQEVMKKDEIF---IPGQ 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL A    +  GI+   + + L+    V  R EFV   +            +++ 
Sbjct: 281 HNLENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFVAEINGIKFYNDSKGTNTDAA 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L           I++   G D+ +        +         +       +  +KI 
Sbjct: 341 EKALNAFE-----NPIILIAGGYDKGESF-EKFASLVAKKVKKVFL-----LGQTKQKIA 389

Query: 430 AEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +E+   G   F       EA+R + E     D++++
Sbjct: 390 SELERIGYKNFEFVSTLKEAVRKSFECAQNGDIVLL 425


>gi|301630395|ref|XP_002944307.1| PREDICTED: UDP-N-acetylmuramate--L-alanine ligase-like [Xenopus
           (Silurana) tropicalis]
          Length = 480

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 141/434 (32%), Gaps = 56/434 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  QGA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GHD---AAQVQGADAVVTSTAVQGDNPEVLAARARKIPVVPRAL-MLAELMRLRQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +   +G   +F IG    ++S   + RL     I +    
Sbjct: 108 --VAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIG--GRLNSAGANARLGQGEYIVVEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH++ +             F
Sbjct: 164 SDASFLN--------------------LLPVMAVVTNIDADHMETYGHDFGRLKRAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    AI+  D+   +E++                   +    V A   +   T+ 
Sbjct: 204 LHRMPFYGAAILCVDNPGVREILADVARPVTSYGFG--ADAQVRAVHVRADAGRMHFTVQ 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D +    L GE  V NAL A  + + +GI  A VL  L     V  RF+  G
Sbjct: 262 RSNGVTLPDLEVELNLAGEHNVLNALAAIAVAVELGIPDAAVLRALAGFSGVGRRFQRYG 321

Query: 351 TNS-------RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PI 401
                        ++  DY H    +   L   R    GR +V+        + +     
Sbjct: 322 DQPARAENGGGHYQLIEDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYSRTRDCFED 381

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIE 454
             KI    AD+ ++T+     E P        +   +   G    I   +  E  R  ++
Sbjct: 382 FVKILGQ-ADVVLLTEVYAAGEAPIVAADGRSLARALRVAGHVEPIFIDDVAELPRAIVQ 440

Query: 455 MLNKQDVLVVAGKG 468
                DV++  G G
Sbjct: 441 NARAHDVVLCMGAG 454


>gi|167580474|ref|ZP_02373348.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           TXDOH]
          Length = 465

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 142/429 (33%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVP--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DDA  ++++        R          +  + V A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCIDDANVRQIVPLISKPVVRYGF--AADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG++    +  LPG   V NAL A  +   + +    + + L + + V  RF+  G  
Sbjct: 261 LREGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEI 320

Query: 353 SRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                    +  DY H    +   +   R    GR  +V      R    R         
Sbjct: 321 PAAGGGAYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNV 379

Query: 409 LA--DIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           L+  D  ++T+     E P      + +   +   G    +      E      ++    
Sbjct: 380 LSTVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|304314679|ref|YP_003849826.1| UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588138|gb|ADL58513.1| predicted UDP-N-acetylmuramate-alanine ligase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 1002

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 12/192 (6%)

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +    I +          +PG F V NAL A  + + +G D   +   LE+   +
Sbjct: 308 SLNCGEHDGVIHIGPLTERIKLRVPGLFNVENALAAITVALVLGFDIRDIKNALEEFRGI 367

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GRFEF+     G  +Y+D AH   S+E + + I     GR+I+            +  +
Sbjct: 368 KGRFEFI-DQVDGVPVYMDAAHNPESMEKLFEGIE--FKGRLIISLDNPDTLTVRDKYRI 424

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEML 456
           G+I  + AD+ IV+  N   E   KI  E         G    I+  +  ++IR A+E+ 
Sbjct: 425 GQILGERADVLIVSGKN---ETTGKIDMEAASEVEGGAGRDKTIKTESVYDSIRRALEIA 481

Query: 457 NKQDVLVVAGKG 468
            K D ++  G G
Sbjct: 482 EKGDTVLHLGPG 493



 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 23/228 (10%)

Query: 260  AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              + G      GY+     +  + A  +  ++ I  E ++     P         A  AA
Sbjct: 783  MGHLGDYQCVCGYRRPQPEVMALEASADGFKLVIGSEMRNVKLRTPGIFNVYNALAAAAA 842

Query: 320  GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               + +  D   ++  +E    V GRF+ +       R+ +DYAH    +  +++ ++  
Sbjct: 843  AWSLGV--DMDDIVRGIESFSGVRGRFQKL---MDSPRVILDYAHNPAGVRAVMQELKG- 896

Query: 380  TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            T GR+IVV     +        +  +  D AD  I      R      I ++ +  I   
Sbjct: 897  TDGRLIVVNTVASESGIDGDLEIASLLKD-ADTVIPASYAARR--ASSILSKRVVHIESS 953

Query: 440  IEKG-------NRI---EAIRTAIEMLNKQDVLVVAGKG----HETVH 473
             ++        +R    EA+  A+E+    D +++ G+G     E   
Sbjct: 954  RKRAGAGTLGASREQVEEAVSKALEIAEPDDTVLIIGEGGFRYAEDYI 1001


>gi|212696279|ref|ZP_03304407.1| hypothetical protein ANHYDRO_00816 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676908|gb|EEB36515.1| hypothetical protein ANHYDRO_00816 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 424

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 4/193 (2%)

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                 ++                  D    L G+ Q+YNA  A  L      D  L   
Sbjct: 221 HEFSFDQIIIKSQNTGYNQFDFKGYSDVKTSLIGKIQIYNACNAINLLDYFKDDFDLDDH 280

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +++          +   S   R+ +D +H   S + +L ++      R+IV F    D+
Sbjct: 281 IIKEGIYNSKNPGRLQMISIKPRVLLDGSHNRESFDALLDSLSLFNYNRLIVGFSVLKDK 340

Query: 395 DQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +      + K   ++A   +VT  DNPR+ + ++++  +           N I A     
Sbjct: 341 EY---KYIIKKLSEIASEIVVTSVDNPRAFEAKELKEIVKKDFSKVRAIENNISAYEFTK 397

Query: 454 EMLNKQDVLVVAG 466
                 D+++  G
Sbjct: 398 SRAKNDDLVLWCG 410


>gi|168183628|ref|ZP_02618292.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|237797009|ref|YP_002864561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Ba4
           str. 657]
 gi|259509765|sp|C3KWA4|MURC_CLOB6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182673211|gb|EDT85172.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|229261312|gb|ACQ52345.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum Ba4
           str. 657]
          Length = 458

 Score = 66.5 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 126/408 (30%), Gaps = 45/408 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V +A    D    I +    + + +   FL            +  +A++GT GK++  S
Sbjct: 73  IVYTAAIASDNPEIIEAKEKNIKLMDRADFLGDLMKGY-----KYNIAISGTHGKTTTTS 127

Query: 132 FVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +  +  + +   +  +G    I +       +        +  S               
Sbjct: 128 MLSHVALKANVDPTILVGGNLDIINGNVRVGKSDFFITEACEYKSSFLKF---------- 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G+  N+  DH+DY++      NA  +  + +           D 
Sbjct: 178 ------------FPYIGAILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDK 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + + + N     ++ G            A  N     +    K F     +PG+ 
Sbjct: 226 NIQSIIKEASCNVITYGINSGDIQAHNIEYDEKACGNFD--VVKNNQKLFSVKLNVPGKH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N+L +  + +A  +    ++E +E       RFE  G  +    +  DYAH    + 
Sbjct: 284 NILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKN-NITVIDDYAHHPTEIS 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   +     ++  VF      R         K   D AD  I+ D     E D   I
Sbjct: 343 ATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTK-CFDKADEIILADIYAAREKDTGII 401

Query: 429 RAEIIHG--------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++++             F +  +        IE     D+++  G G
Sbjct: 402 SSDMLGDKLRDRGLKCTNFHKFNDIK---NYLIENAKDGDLILTVGAG 446


>gi|333029403|ref|ZP_08457464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
 gi|332740000|gb|EGJ70482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
          Length = 441

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 105/355 (29%), Gaps = 40/355 (11%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ +TG++GK++  S +  +  ++G +    G      +            I L
Sbjct: 99  RYSNAKMICITGSNGKTTTTSLLYHMFHKAGKNVGLAGNIGKSLARQVAEENHEFYIIEL 158

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                              SS  LD   +   K       N+  DH+D +      +   
Sbjct: 159 -------------------SSFQLD--NMYNFKADIAILLNITPDHLDRYDNCMDKYIDA 197

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                +    +   I ++DD   KE +        +         F +      I +   
Sbjct: 198 KFRIIQNQTDKDHFIYWSDDPILKEQINHRTIHATKNPFSVEHSDFTYKLGNKIILDGGN 257

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           ++I  E      +  L      YN + A        +    + + L   + V  R E+V 
Sbjct: 258 LSIDKEFVKLSGVHNL------YNTMAAITAAYLSKLSPMEIEQGLNSFNGVEHRLEYVD 311

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T      I    A   +S    L+ +         ++   G D+      I   I     
Sbjct: 312 TIHGVRFINDSKATNVDSCWYALQAMH-----NSTILILGGKDKGNDYNKITPLIKEKCT 366

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV 464
            +  +  +N +         +   G    IE   N  +A+  A  +    D +++
Sbjct: 367 GLVFLGANNTK-------LHQFFDGFNIPIEDTNNMTDAVVKAKGLAKSGDTVLL 414


>gi|281421048|ref|ZP_06252047.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
 gi|281404966|gb|EFB35646.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
          Length = 445

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 117/361 (32%), Gaps = 38/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G      G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIIKSAGYDVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D ++ +
Sbjct: 140 ---SLALQV-----AETPHKYYVIELSSFQLD--NMYKFRANVAILLNITPDHLDRYEFK 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   +E   I + DD     V K       +     +           
Sbjct: 190 MQNYTDAKMRITQNQTEEDSFIFWNDDPI---VTKELAKYNLKSHLCPFSEFKEEGCVGF 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               K ++    + +       L G+  +YN+L A   C  +GID   + + L     V 
Sbjct: 247 IEDGKYKLNFPSDFEMPQADMSLRGKHNIYNSLAAGLACNIVGIDHETLHKGLSDFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E VG       +    A   ++    L+++ T       ++   G D+      I  
Sbjct: 307 HRLEKVGKFQGVYYVNDSKATNVDACWYALESMTT-----PTILIIGGKDKGNDYNQIKD 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    A I  +  DN +  D          GIP   +  +  + +    E+    D ++
Sbjct: 362 LVKEKCAGIVYLGADNQKLHDNFDAL-----GIP-VRDTHSMKDCVAACQELAKPGDTVL 415

Query: 464 V 464
           +
Sbjct: 416 L 416


>gi|15678558|ref|NP_275673.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621604|gb|AAB85036.1| UDP-N-acetylmuramyl tripeptide synthetase related protein
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 682

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG F + NAL A  + + +G D   +   +E    + GRFEF+     G R+Y+D AH  
Sbjct: 13  PGIFNIENALAAITVALILGFDMEDIKRSIEDFRGIRGRFEFI-DEVDGVRVYMDAAHNP 71

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            S+E + + +     GR+IV            +  +G++  + A   IV+  N  +   +
Sbjct: 72  ESMEKLFEGME--FQGRLIVSLDNPDTLTVRDKERIGRVLAERAHTIIVSAKNETTGVTD 129

Query: 427 KIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMS 483
              A+ +    G    I+  +  ++IR A+E+    D ++  G G      V N  + + 
Sbjct: 130 MEAADEVAWGAGEERTIKTESVYDSIRRALEIAEPGDTILHIGPG------VVNTYENVR 183

Query: 484 VDCDIIRE 491
            D +   +
Sbjct: 184 SDIEEALK 191



 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 20/217 (9%)

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           + G      GY      +  + A     ++ I  E ++     P    F VYNAL AA  
Sbjct: 466 HLGDYQCICGYLRPQPDVMAIEASPGGFKLVIGQEMREVRLATPGI--FNVYNALAAAAT 523

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G++   ++  LE    VPGRF+ +  + R   I +DYAH    +  +++++R    
Sbjct: 524 AWTMGLEIDDIVRGLESFKGVPGRFQELSESPR---IILDYAHNPAGVRAVMQDLRG--K 578

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI- 440
           GR+IVV     +        +  I  D AD+ I      R      I  E    I     
Sbjct: 579 GRLIVVNTVASESGIDGDREIAAILKD-ADVVIPASYAARR--ASDILGERAVHIGSSRM 635

Query: 441 ---------EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +    EA+R A+E+    D +++ G+G
Sbjct: 636 RAGGGTLGASREQVAEAVRKALELAGPDDTVLIIGEG 672


>gi|297616979|ref|YP_003702138.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144816|gb|ADI01573.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 456

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 103/285 (36%), Gaps = 18/285 (6%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               VSVE SS  L+  R         +  N+  DH+D H T + Y  AK ++     P 
Sbjct: 157 EHGVVSVEVSSFQLETIR--EFHPRVAAVLNITPDHLDRHGTMEQYVEAKAKILSNQGPD 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   + Y +DA+ + +   A +      +     + ++++            + +  ++ 
Sbjct: 215 DFSVLNY-EDAWVRRLKTEAKSQVIFFSTARRLPRGVYVEDGKIKARLYDDEVVICPRE- 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L GE  + N L A G+ IA+G+    + + L     V  R E V   +    +  
Sbjct: 273 --NVALRGEHNLENVLCAVGIAIALGVKPDTIADTLRSFKGVRHRLEEVRRVNGVLYVND 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                  S    L+  +        V+   GG        ++ ++  D     ++     
Sbjct: 331 SKGTNPESTIKALQAFQE------PVILIAGGRNKGADFTVLSRVIKDKVRHLVLV---- 380

Query: 421 RSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E    IR +++  G        +  EA+  A E+    DV+++
Sbjct: 381 -GEASLLIREKVLEQGFQHIDVAKSFEEAVYRAKELARPGDVVLL 424


>gi|312621430|ref|YP_004023043.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201897|gb|ADQ45224.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 455

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 141/404 (34%), Gaps = 36/404 (8%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    + +    L +    +FL L          +N++A+ GT GK++  S
Sbjct: 64  VIYTAAISKDNPELLAAKRMNLKIYERAEFLGLLMRNF-----KNVIAIAGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +   +   + +     +  + +   + +       S             
Sbjct: 119 MIGYILKKANYNPTIL-VGAFVKQLGGNFVIGSKDYLVVEACEYVDSFLKFK-------- 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +      R F   +P     +   DD 
Sbjct: 170 ------------PTIGVILNIDNDHLDYFKDIDSIK-ESFRKFAMKIPSSGFIVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K+V+ + H     + +      F         + +  V              +PG   
Sbjct: 217 NVKDVISKLHTQVVCISTKEKADIFADNISYNDGYYEFDVKNKNNEILAHIKLNIPGFHN 276

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYNAL A  +   + I+S  + + L +      R E VG    G  +Y DYAH    ++ 
Sbjct: 277 VYNALAAFAVASKLRIESFTIEQTLSEFCGASRRLEKVG-EFNGIYLYDDYAHHPTEIKA 335

Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED------ 424
            L  ++ I+ G+++ +F      R +       + +L LAD  IVTD     E       
Sbjct: 336 TLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAE-SLKLADKVIVTDVYAAREKNVFGIT 394

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            EK+  ++           N  +     ++   K D++   G G
Sbjct: 395 SEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIGAG 438


>gi|126701142|ref|YP_001090039.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile 630]
 gi|254977143|ref|ZP_05273615.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-66c26]
 gi|255094472|ref|ZP_05323950.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CIP
           107932]
 gi|255102728|ref|ZP_05331705.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-63q42]
 gi|255308549|ref|ZP_05352720.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile ATCC
           43255]
 gi|255316223|ref|ZP_05357806.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-76w55]
 gi|255518885|ref|ZP_05386561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-97b34]
 gi|255652064|ref|ZP_05398966.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-37x79]
 gi|260685038|ref|YP_003216323.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260688696|ref|YP_003219830.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
 gi|306521800|ref|ZP_07408147.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-32g58]
 gi|123066482|sp|Q181B7|MURC_CLOD6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115252579|emb|CAJ70422.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           difficile]
 gi|260211201|emb|CBA66689.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260214713|emb|CBE07377.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
          Length = 450

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 130/406 (32%), Gaps = 40/406 (9%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VV +A    D    + +     +V N   FL            +N +AV+GT GK+S  S
Sbjct: 64  VVYTAAVHPDNEELVAAKEKNKLVMNRATFLGQIMREY-----KNSIAVSGTHGKTSTTS 118

Query: 132 FVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            +  I +      +  +G   ++         +        + +    +           
Sbjct: 119 MLSTIFEYADLDPTILVGGNLSMIGGNVKIGNSNHFITEACEYVDSFLNFN--------- 169

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               N+  DH+DY         A    F +LLP E   II  DD
Sbjct: 170 -------------PKISIVLNVEEDHLDYFSGIDEIK-ASFNKFGKLLPPEGYFIINGDD 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +++        +          I         +             +F   + G  
Sbjct: 216 ENIDDILYDVKATIIKYGRDSDNDAVIKDIHFDNSGHGIFRIEYEGRDLGEFELSVYGLH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YNA  A    +  GID   + ++++    V  RFE  G   +   +  DYAH    L+
Sbjct: 276 NIYNASSAIMAALVSGIDLETIRKNIKIYKGVGRRFETKGY-YKNALVVDDYAHHPTELK 334

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE-DPEK 427
             L   + +    +  +F       + K  ++G+ +     AD  I+TD     E DP  
Sbjct: 335 ATLAAAKKLKKSTLWCIF-QPHTYTRTK-SLLGEFSEAFYAADKVIITDIYAAREKDPGD 392

Query: 428 I-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I       ++       I      + ++   E +   D+++ AG G
Sbjct: 393 IHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRENVKDNDLVITAGAG 438


>gi|33598264|ref|NP_885907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           parapertussis 12822]
 gi|62900578|sp|Q7W4B2|MURD_BORPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33566822|emb|CAE39037.1| putative peptidoglycan synthesis protein [Bordetella parapertussis]
          Length = 508

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 129/389 (33%), Gaps = 57/389 (14%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A     +    +LA+TGT+GK++V +  +Q+ +  G+S+   G  S  +  A  
Sbjct: 118 RALAGLAESREYRP--RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAALI 175

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           + L       +                +E SS  L+  R   +   A    N+ +DH+D+
Sbjct: 176 DALDQDDLPQV--------------WVLELSSFQLETTRT--LAPDAAVVLNVTQDHLDW 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H   QAY  AK R+    L     AI+  DD  +  +++       R            +
Sbjct: 220 HGDMQAYAQAKARI----LKPARLAIVNRDDPLTVAMVESLQALNVRSFGRDVPALVGDM 275

Query: 280 -----KKVCAIHNKQQVTISVEGKDFDFLFPLPGE-------------------FQVYNA 315
                + V  +   +               P P                         NA
Sbjct: 276 GLELGQGVAWLTACESNDFDEPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNALNA 335

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  L  ++ +    +L  L      P R E V +      I         +    L+ 
Sbjct: 336 LAAMQLARSLDLGWGPMLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEG 395

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +     G+ +V+   G  + Q   P++  +    A   ++        D   I   +   
Sbjct: 396 L-----GQQVVLIAGGQGKGQDFSPLVP-VVRRHARAVVLI-----GVDGAAIGKVLEPT 444

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +   +  EA+R A E+    D +++
Sbjct: 445 GVPCVAAADMREAVRRAAELAQPGDAVLL 473


>gi|225850187|ref|YP_002730421.1| folylpolyglutamate synthetase [Persephonella marina EX-H1]
 gi|225646287|gb|ACO04473.1| folylpolyglutamate synthetase [Persephonella marina EX-H1]
          Length = 406

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 113/387 (29%), Gaps = 32/387 (8%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            +K L               + ++GT+GK S A +++ + +  GL +        +    
Sbjct: 21  IKKALEEIGEPQKEFPS---ILISGTNGKGSTAVYLESLLRYHGLKTGLFTSPHIMEENE 77

Query: 158 QDNRLTTPSPIY-----------------LAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           +         +                  L    +         +        L+     
Sbjct: 78  RWQVNRKSIEVDKLDRYIKEIEDLIKRYDLTYFEASAVIAFRYFLDENVDIAVLEVGLGG 137

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                   +  +               N+ M +  E L                E++ +A
Sbjct: 138 RWDATNVVYPEISVITNVSLDHTDLLGNSLMEIAREKLGITRKDRPVVIGTDQMEIISQA 197

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              G + +     G    +K     +  +   I            L        A +   
Sbjct: 198 VMKGIKEIYHYPIGFTYQIKDRSMDYIFKGKEIRDIRTSILGDRQLSNAATALTAFLLYS 257

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               I +D   V + +     +PGR + +        + VD AH  +++   ++ ++ + 
Sbjct: 258 ERKGIKVDDEKVKKAISG-SFIPGRMQILKEEPP---VIVDGAHNLDAVSKTVEEVKRLY 313

Query: 381 SGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            GR I+ VF C  D+D         I    +D  I T   P S     I  + I      
Sbjct: 314 PGRKIITVFSCMKDKDYKSIIH---IIRSSSDRVIAT-KLPFS---RSITEDEISQFKDI 366

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               +   A++ AIE  + + V+++ G
Sbjct: 367 DFIPDIDGALKKAIEEADSKSVVLITG 393


>gi|296134865|ref|YP_003642107.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
 gi|295794987|gb|ADG29777.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
          Length = 469

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 90/444 (20%), Positives = 141/444 (31%), Gaps = 67/444 (15%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLF 105
           VAI      GH     A  Q A+A+VVS+A    +          I VV   R   L+  
Sbjct: 53  VAI------GHD---AAHVQDADAVVVSTAVRADNPEVLAARARHIPVVP--RAVMLAEL 101

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
                    +  +A+ GT GK++  S V  +    G   +F IG    ++S   + +L  
Sbjct: 102 MRL------KRGIAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGVNAKLGQ 153

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              I +    S  S                       +  +    TN+  DH+D +    
Sbjct: 154 GEYIVVEADESDASFLN--------------------LLPVMAVVTNIDADHMDTYGHDP 193

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A        F   LP    A++  DDA  + +M     +         +   +    V A
Sbjct: 194 ARLRHAFVDFIARLPFYGAAVLCVDDAAVRGIM--PFVSKPITSYGFAEDAQVRAIDVRA 251

Query: 285 IHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              +   T+                LPG   V NAL A  +   + +D A +   L    
Sbjct: 252 EGAQMHFTVLRRNGVQLPPLAVTLNLPGRHNVQNALAAIAVATELNVDDAAIQRALAGFT 311

Query: 341 VVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            V  RF+  G     +     +  DY H    +   L   R    GR  +V      R  
Sbjct: 312 GVGRRFQRYGEVAAHHGGHFTLIDDYGHHPVEMAATLAAARGAFPGRR-LVLAFQPHRYT 370

Query: 397 GKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGN 444
             R +       L  AD  ++ +     E P        +   +               +
Sbjct: 371 RTRDLFEDFVKVLGEADAVLLAEVYAAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVAD 430

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
             +AI   +EM  + DVL+  G G
Sbjct: 431 LPQAI---LEMAREGDVLICMGAG 451


>gi|91200088|emb|CAJ73131.1| similar to UDP-N-acetylmuramate-L-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 498

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 139/417 (33%), Gaps = 49/417 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS+A    +    +     I VV  + + L            +  +A++GT GK++ +
Sbjct: 86  VIVSAAIQEGNPELKVARQLGIKVVKYS-QILGSLMQE------KRGIAISGTHGKTTTS 138

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I +++                     +       +               + E +
Sbjct: 139 AMISTILKKA---------------ELDPTYVIGGEVPDIGGNAHLGKGNLFVAEACEYN 183

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD     G+       TN+  DH+DY+   +   NA       +       +   DD
Sbjct: 184 SSFLDLVPSIGV------ITNIEEDHLDYYGNLEEIVNAFGHFANLIAKNGLLVV--NDD 235

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
             +  V  +         S+ +   +   K +       +  +   GK F DF   +PG 
Sbjct: 236 DRNVAVAAKRSVCKRETYSLRHTSHWYAKKILPTTQGINKFRVYNRGKIFGDFWLKIPGS 295

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL A  +C +IG+D  ++   LE       RF+ V   +    I  DYAH    +
Sbjct: 296 HNILNALAAIAVCTSIGVDKEIIKTSLESFKGAKRRFQIVAIKN-NITIIDDYAHHPTEI 354

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDN-PRSEDPE 426
           ++ LK  R +   R I          +  R ++ K++    LAD   + D    R  D E
Sbjct: 355 DVTLKAARELYPARKICCVYQPHQYSRT-RHLLKKLSESFYLADKVALADIYESRDNDFE 413

Query: 427 -------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG------HE 470
                  K+  EI                           DV++  G G      HE
Sbjct: 414 KTSISSLKLYEEIRKTGVDIQYYPQMEYITDMLCLNAKPGDVIITMGAGDIWKVAHE 470


>gi|83953993|ref|ZP_00962714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
 gi|83841938|gb|EAP81107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
          Length = 461

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 121/407 (29%), Gaps = 67/407 (16%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQ 134
           Y   +       +  + V ++   F   FA+  +        I+A+TG++GKS+ ++ V 
Sbjct: 74  YPAPNPVIVAAQDAGVPVDNDIGLFFQSFATLAWDNFDVVPKIIAITGSNGKSTTSALVH 133

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I + +G  +   G         +         + L                   SS+  
Sbjct: 134 HILKHAGRPTQLAGNIGRGVLDIEPAIDGEVVVLEL-------------------SSYQT 174

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           D  R   +      FTNL  DH+D H     YF AK RLF E  P  +       D    
Sbjct: 175 DLAR--NLTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVI---GVDEPEG 229

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------DFDFLFPLP 307
             +    + G     V        L  +      ++  +S           D   +  LP
Sbjct: 230 RFLAGQLSEGAADDRVIRVSVDRKLTGLGWQVFARKGFLSEYRGGKQIGSIDLRSITGLP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA  A   C  +G    ++         +P R + VG       +    A   +
Sbjct: 290 GAHNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQTVGEAGGVRFVNDSKATNVD 349

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQG---------KRPIMGKIALDLADIAIVTDD 418
           S    L   + I   R I                     K  ++G+ A   A        
Sbjct: 350 SAVKALAAFKNI---RWICGGLEKEGGLGSLSEPLETVRKAYVIGREAAQFA-------- 398

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                        +  G+      G    A+  AI      DV+++A
Sbjct: 399 -------------MKLGVE-AEVCGTMDVAVARAINDAEAGDVVLLA 431


>gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M04-240196]
          Length = 445

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +  + L+   
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-ELLADIV 105

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +R        ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 106 NRRDD----KVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F           +   D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC AIG+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   + 
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALV 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 445

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 146/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A++ G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGPVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKAGVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F     +   A     D      MKRA               +      
Sbjct: 200 LLDYAHTKAKIFRGDGVQVLNA-----DDVFCRAMKRAGREVKWFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  ++    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERETGRLKQGDEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|183982420|ref|YP_001850711.1| Mur family ligase [Mycobacterium marinum M]
 gi|183175746|gb|ACC40856.1| ligase, Mur-family [Mycobacterium marinum M]
          Length = 911

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 15/167 (8%)

Query: 310 FQVYNALVAAGLCIAIGIDSALV----LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             V NA+ A G+  A+G     +              PGR      +  G R+ +DY H 
Sbjct: 689 HNVENAMFATGMAYALGKTLDQISAGLRTFDNSFFQSPGRMNV--FDEHGFRVILDYGHN 746

Query: 366 SNSLEMILKNI-RTITSGRIIVVFGCGGDR-DQGKRPIMGKIALDLADIAIVTDDNPRS- 422
             ++  ++  + R    GR IV   C GDR D+    I  K+A          DDN R  
Sbjct: 747 EAAVGAMVDLVDRLKPRGRRIVGLTCPGDRRDEDATAIAAKVAGHFDTYICHRDDNLRDR 806

Query: 423 ---EDPEKIRAE-IIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              E PE +R   I  G+        G   +A+  A+E     D+++
Sbjct: 807 EPDEVPELLRDALIAEGVAPDAISIIGEEEQALDAALEQAQPDDLVL 853


>gi|189029013|sp|A1KVL2|MURC_NEIMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120867149|emb|CAM10916.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis FAM18]
 gi|254671167|emb|CBA08261.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha153]
 gi|261391937|emb|CAX49399.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis 8013]
 gi|317164855|gb|ADV08396.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           TCDC-NG08107]
 gi|325134890|gb|EGC57523.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M13399]
 gi|325138957|gb|EGC61507.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           ES14902]
 gi|325142977|gb|EGC65334.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           961-5945]
 gi|325208762|gb|ADZ04214.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           NZ-05/33]
          Length = 469

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|325132969|gb|EGC55646.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M6190]
 gi|325136990|gb|EGC59587.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M0579]
          Length = 506

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 150

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 151 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 208

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 209 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 248

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 249 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 307 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 366

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 367 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 425

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 426 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485

Query: 464 VAGKG 468
             G G
Sbjct: 486 NMGAG 490


>gi|169343556|ref|ZP_02864555.1| FolC bifunctional protein [Clostridium perfringens C str. JGS1495]
 gi|169298116|gb|EDS80206.1| FolC bifunctional protein [Clostridium perfringens C str. JGS1495]
          Length = 441

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 134/391 (34%), Gaps = 47/391 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
                 + + GT+GK S  + +  + + +G                +             
Sbjct: 37  HKDTKFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENINKDDL 96

Query: 164 ----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                 T   I  A    Y S + V +  +E    G    RLD 
Sbjct: 97  AVLMGDVKKAIDKVMKLGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGG----RLDA 152

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             ++      L    +D+            +    ++    P I Y  +  + EV+K   
Sbjct: 153 TNVVIPEVVVLTSISLDHMNILGNTIEEITKEKCGIIKSGVPVISYPQEEKALEVIKERC 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N     L V       ++  +    + Q++ +S+E +  +    L G+ QV N LVA   
Sbjct: 213 NELGCNLEVVNTEDIKNII-IDKEKHVQKIEVSLEDEILEIDLGLLGDHQVKNFLVALKT 271

Query: 322 CIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            I +  +    S   ++   K     GR E +   +    + +D AH  + +  +  +I 
Sbjct: 272 LIKLRNNGVNISNESIKEGFKKVRWIGRMEVL---NENPLVVIDGAHNIDGIRSLRNSID 328

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
              + + I ++ G  GD+       M +      D  ++ + +  R+ED E++  ++   
Sbjct: 329 KYFNFKNITLILGVLGDKQVD---EMVEEITRGVDKVVIVEPHSDRAEDIEELYIKVKKY 385

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    +  +  +A   A  + N+ D+L++ G
Sbjct: 386 VKEVFKFKDYKDAYNKAYSLTNRDDLLLICG 416


>gi|300173574|ref|YP_003772740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887953|emb|CBL91921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 448

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 114/363 (31%), Gaps = 42/363 (11%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+  A  L       ++AVTG++GK++  S ++ + +  G      G           + 
Sbjct: 98  LTEVAVAL-SSFEGRLIAVTGSNGKTTTTSLIRDMLKSDGQKVTTAGNIGIPVCEVIKD- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           LT    + L                 E SS  L       I+      TN+  +H+DYH 
Sbjct: 156 LTADDTLLL-----------------ELSSFQL--MGTPDIRPDIALITNIFANHLDYHG 196

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T++ Y  AK +L +     +   +        + + K                       
Sbjct: 197 TRENYVAAKFQLTKNQTSNQLLVLNADGQDTDEFIKKTHAKVVAFSRIKNDYTVRTDNVD 256

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +          IS           L G   + N + A  +    G+    +   LE    
Sbjct: 257 L---------IISDNHLMPLSGIKLVGPHNLENIVAAVTVAKLAGVHDTAIRHVLETFGG 307

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R + V T++         A    + +  L +          +    G DR      +
Sbjct: 308 VEHRLQHVLTDNGVVFYNDSKATDIEATQTALNSFHQ-----PTIWLAGGLDRGDDLMRL 362

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  ++   A IA         E  +KI A         I   +  +A+  A+++    DV
Sbjct: 363 LPNLSHVKAVIAF-------GETQQKIVAVARAANKPVITVDDVEQAVPVAVKLAVTGDV 415

Query: 462 LVV 464
           +++
Sbjct: 416 VLL 418


>gi|294792042|ref|ZP_06757190.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
 gi|294457272|gb|EFG25634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
          Length = 456

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 95/281 (33%), Gaps = 16/281 (5%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +  E SS+ L+   +   + I     N+  DH+  H+T + Y  AK R+FE  L  +  
Sbjct: 159 FLVAELSSYQLET--IKYFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTDYL 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD    ++  R+ +   ++          +                 +    +  
Sbjct: 217 VL-NIDDPVVADMEHRSSSHILKISQKKAVENGAYYAD---GQCYIAKDGVAKFVIGNED 272

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   + N L    L  A+G+    +   + + H V  R E V T           A
Sbjct: 273 IHIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKTIDGITFYNDSKA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +S+   L++         +++   G D+       M  +      +  + +   R E
Sbjct: 333 TNVDSVVKALESFDQ-----QVILLAGGHDKMTPLEDFMELVKEKTKAVIFMGEAADRFE 387

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              K       G+       +  EA+    ++    D++++
Sbjct: 388 TAAK-----EAGVKPIYRALSMKEAVEQGYKLAETGDIVLL 423


>gi|332974212|gb|EGK11145.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella kingae ATCC 23330]
          Length = 468

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 142/425 (33%), Gaps = 59/425 (13%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGT 123
           GAE +V S+A + ++    A +  + P++     R   L+       G      +A+ GT
Sbjct: 64  GAEVVVTSTAIAHENPEVQAALAQHIPVI----PRAMMLAELMRLKDG------IAIAGT 113

Query: 124 SGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S    I   +G   +F IG    +++   + +L     +      S  S    
Sbjct: 114 HGKTTTTSLTASILGAAGLDPTFVIG--GKLTAAGTNAKLGKGEYLVAEADESDASFLY- 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +  +    TN+  DH+D +       +     F   +P   
Sbjct: 171 -------------------LSPVITVITNIDEDHMDTYGQDVNRLHQAFIDFVHRMPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--- 299
            A +  D  + + ++ +             Q    +   V     + Q T++   +    
Sbjct: 212 KAFLCIDSEHVRTILSKIKKPFATYAIDNDQADI-YATNVQTNGAQMQFTVNFRHESSLQ 270

Query: 300 -FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR- 357
            FD    LPG   V NAL + G+ +      A + + L     V  RF+  G  +     
Sbjct: 271 SFDVTLNLPGRHNVLNALASIGVALECKAPVAAIQQGLANFAGVGRRFQSYGEIALPQGG 330

Query: 358 ---IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
              +  DY H    +   +   R    + R+++ F      R +        +    AD 
Sbjct: 331 KALVIDDYGHHPVEMAATIAATRGAYPNNRLVLAFQPHRYTRTKDLFYQFVDVLST-ADR 389

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQDVLV 463
            ++T+     E P  I     H +   +     +E I  A         + +L   DV++
Sbjct: 390 VVLTEVYAAGEAP--IPDANAHSLANAVRARGLVEPIYCADINALPSILLSVLKDGDVVL 447

Query: 464 VAGKG 468
             G G
Sbjct: 448 TMGAG 452


>gi|317055687|ref|YP_004104154.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
 gi|315447956|gb|ADU21520.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
          Length = 464

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 109/363 (30%), Gaps = 48/363 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P    A+TG+ GK++  + V +  +  G      G          +    T    
Sbjct: 111 FFDLCPCKTYALTGSDGKTTTTTLVSEFLKSEGKRVHLGGNIGKALLPLVETISET---- 166

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           V  E SS  L   R           TN+  +H++ H T + Y  
Sbjct: 167 --------------DVVVCELSSFQLISMR---ESPDVAGITNIRPNHLNVHGTMEEYTL 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A      +     + +++  DD  ++ +  R                   L++   +   
Sbjct: 210 A-KCNILDHQNAYARSVLSLDDEVTRGLQDRVRGDLAWFSIKEKPDNGAFLREDGMLCYN 268

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           ++  ++           +PG   V + L A  +     +    V +  ++   V  R EF
Sbjct: 269 ERGKVTEYV--HMKDIKIPGMHNVEDYLTAIAMTYG-EVKPENVAKIAKEFGGVEHRIEF 325

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +   +   L            ++   G D+     P M     +
Sbjct: 326 VRELDGVKYYNNSIASSPTRVLACLAAFDQKQ-----IMIQGGSDKGVSFEP-MAAPICE 379

Query: 409 LADIAIV---TDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNKQ 459
              + I+   T D        KIRA +             I   +  EA+RTA E   + 
Sbjct: 380 KVKVLILMGQTKD--------KIRAAVEAAPNFKGSGLKIITVKDMAEAVRTAREYAEEG 431

Query: 460 DVL 462
           D++
Sbjct: 432 DIV 434


>gi|218886057|ref|YP_002435378.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757011|gb|ACL07910.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 455

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 137/403 (33%), Gaps = 48/403 (11%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
              + +A  +   PI+     R   L+       G      +A+ GT GK++  S    I
Sbjct: 78  ENPEVAAARKRGIPII----PRAEMLAELMRLRTG------IAIAGTHGKTTTTSLTAAI 127

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G                     T P+ I   +  +Y ++  +   +   +      
Sbjct: 128 FDEAG---------------------TDPTVIIGGRLNAYGANARLGDGAYLIAEADESD 166

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +  I    TN+  DH+D++ +QQA  +A +    ++       +   DD   + +
Sbjct: 167 GSFLCLFPIVTVVTNVDMDHMDHYPSQQAIDDAFVDFMNKVPFYGMNVV-CGDDPGVRRL 225

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + R              G  I  + +    +     I             PG   + NAL
Sbjct: 226 LPRVKRPVVTYGFGE--GNAIRAEVLACADSSLFNVIVNGDDIGQVRLAQPGRHNILNAL 283

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G+ +   I    ++  L K   V  RFE  G    G  +  DY H    +   L   
Sbjct: 284 AAIGVALECDIAPEKIVAGLAKFGGVGRRFERKG-ERDGVLVVDDYGHHPAEIAATLATA 342

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP------EK 427
           R      R++VVF     R    + + G+     D  D  ++T+  P SE P      + 
Sbjct: 343 RQCFPHRRLVVVF--QPHRFSRTQALFGEFCKVFDGVDKLLLTEIYPASEKPIPGVSGQS 400

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
           +   I       +      +++  A+ E+L   D+L+  G G+
Sbjct: 401 LAQGIRQVSKTDVTYHQDFDSVLAALPEVLQPGDLLLTLGAGN 443


>gi|295839430|ref|ZP_06826363.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
 gi|295827475|gb|EFG65417.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
          Length = 474

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 139/423 (32%), Gaps = 56/423 (13%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DG      A+ +G E +V +  +              + V  +        A RL G   
Sbjct: 63  DGA-----ALPEGTELVVTAPGWQPGKPLFAAAGAAGVPVWGDV-----ELAWRLRGPGA 112

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              LAVTGT+GK++    +  I + +G  +  +G                     ++   
Sbjct: 113 APWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------------VSLLD 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L+ +    ++VE SS+ L       ++  + +  NL  DH+D+H +  AY  A  +  
Sbjct: 155 AVLAEEPYDVLAVELSSYQLHW--APSVRPHSAAVLNLAPDHLDWHGSMAAY--AADKGR 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                + +     AD A  K V       GCR +             V       +  + 
Sbjct: 211 IYEGNQVACVYNAADPATEKLVRAADVEEGCRAIGFTLGTPRPSEVGVVEGLLVDRAFVP 270

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +             P    + NAL AA L  A G+ +  V + L      P R E V
Sbjct: 271 DRTEQAQELAELADVNPPAPHNIANALAAAALARAYGVPATAVRDGLRAFRPDPHRIEHV 330

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T      +    A  +++ E  L           IV    G  +      ++   A  L
Sbjct: 331 ATIDGVAYVDDSKATNTHATEASLAAYEP------IVWIAGGLAKGATFDELVQGAAKRL 384

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRI------EAIRTAIEMLNKQDVL 462
             + ++        D   I   +    P       +R       EA+R A  +  + D +
Sbjct: 385 RGVVLL------GRDRALIAEALARHAPNVPVVDLDRADTGAMSEAVREAAGLAREGDTV 438

Query: 463 VVA 465
           ++A
Sbjct: 439 LLA 441


>gi|83589397|ref|YP_429406.1| FolC bifunctional protein [Moorella thermoacetica ATCC 39073]
 gi|83572311|gb|ABC18863.1| FolC bifunctional protein [Moorella thermoacetica ATCC 39073]
          Length = 440

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRP 400
            P R E +        + +D AH  +    +   +       R+I+V G   D+++ K  
Sbjct: 297 WPARLEIIQREPM---VIIDGAHNFDGAVSLRLALEEIFRYRRLILVLGMLADKEREKVV 353

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +           IVT  +NPR+ + + +   +   +           A+  A+ +    
Sbjct: 354 AVLAPLAA---AVIVTRPNNPRAGNWQSLADSVRRYVGVVEVIEAIPAAVERALALAEPS 410

Query: 460 DVLVVAG 466
           D++ V G
Sbjct: 411 DLICVTG 417


>gi|310829359|ref|YP_003961716.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
 gi|308741093|gb|ADO38753.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
          Length = 471

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 131/421 (31%), Gaps = 43/421 (10%)

Query: 56  GHLF--IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH +  IP+        +V S+A    +       +  + +V+ +  +L L +       
Sbjct: 64  GHDYNNIPEDTDM----VVYSAAIHEDNPDMVRAKDLDLPIVERS-DYLGLLSLAFD--- 115

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + V GT GK++ +S +  +   +            +     +  L       +   
Sbjct: 116 --KTIGVAGTHGKTTTSSMIAALLHYADFDPSVS-IGGKLPEIGGNACLGDSDYFVIESC 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               S    +H                      G  TN+  DH+DY              
Sbjct: 173 EYVDSFLKTSHYI--------------------GIITNIEEDHLDYFTEGLPQIKESFHK 212

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  +LP +   I Y D     + ++                   H  +   + N      
Sbjct: 213 FGAILPPDGLMIAYGDSQDVLDTVENLRCPVTTYGFEKKNDWTAHNIQYDDMGNPSFDAY 272

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F   +PGE  V NAL        +GID A V + L+  H    RFEF G   
Sbjct: 273 HHNEFYGHFNMKIPGEHNVLNALSCIACSEFLGIDEATVQKTLDNFHGAKRRFEFRG-EV 331

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADI 412
            G  +Y DYAH    L++++          + V+F      R               AD 
Sbjct: 332 NGINVYEDYAHHPTELKVVIDACLNHAHNNLWVIFQPHTYSRTFYLFDEFVDAFAK-ADF 390

Query: 413 AIVTDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEA-----IRTAIEMLNKQDVLVVA 465
            I+ D     E  D +    ++   I         + +     ++   + L   D+++VA
Sbjct: 391 IILNDIYSDREGNDWDIYSEDLAKRIKEKYHIPTIVMSEFNTIVKYLSDNLESDDLVLVA 450

Query: 466 G 466
           G
Sbjct: 451 G 451


>gi|268318243|ref|YP_003291962.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
 gi|262335777|gb|ACY49574.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
          Length = 455

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 125/363 (34%), Gaps = 37/363 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS         I+AVTGT+GK++  S +  I +R+G  +   G       F+     T
Sbjct: 100 EVASWFCRAP---IVAVTGTNGKTTTTSLIGYIFRRAGRRTIVAGNIGYP--FSDYVLDT 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           TP                   V +E SS  LD   +   +       N+  DH+D +   
Sbjct: 155 TPD----------------DVVVLEVSSFQLD--HVATFRPRVSVLLNITPDHLDRY-NY 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                A+ +       +    ++Y  D     +     +    +  +G+  +        
Sbjct: 196 NFNEYAQSKFRIFANQRGEDVLVYNHDDELIRMAAERAHRKRGLRVLGFSQRTELPAGAF 255

Query: 284 AIHNKQQVTISVEGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                  + I  + +         L G   +YN+L AA     + + + +V E L     
Sbjct: 256 VRDGYLILRIEQQEEVLMHANELALRGRHNLYNSLAAAVAARVMEVRNDVVRESLASFEG 315

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R EFV        +    A   N++   L++         IV+   G D+      +
Sbjct: 316 VPHRLEFVRELDGVRYVNDSKATNVNAVWYALESFS-----CPIVLIAGGRDKGNDYSVL 370

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              +   +  +  +       E  +K+  E+   +P  ++  +  EAI+ A       DV
Sbjct: 371 KPLVKEKVRALVAI------GESADKLLRELGPLVPHAVKAQSMEEAIQYARVFAEPGDV 424

Query: 462 LVV 464
           +++
Sbjct: 425 VLL 427


>gi|254372062|ref|ZP_04987555.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151569793|gb|EDN35447.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella novicida
           GA99-3549]
          Length = 451

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 93/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LNPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +              + +     I       I  +G D  F   LPG + V NA      
Sbjct: 229 SDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQNATACIIA 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I+
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALSLADQLILLPTYSAGEQIIKGAESQDIV 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++       AI    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHAIYFLEKLANENTVILIQGAG 440


>gi|94264635|ref|ZP_01288418.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
 gi|93454930|gb|EAT05171.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
          Length = 463

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 134/419 (31%), Gaps = 52/419 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V SSA    +    A   +  P++     R   L+            N +AV G
Sbjct: 63  AGADVVVTSSAVGADNPEVVAAQEAGVPVI----PRAAMLAELMRLKV-----NGIAVAG 113

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S  S    +   +GL    +     ++SF  + +L T   +      S  S    
Sbjct: 114 SHGKTSTTSMAGVVLAEAGLDPTVV-IGGQVNSFGSNAKLGTGDFLVAEADESDGSFVR- 171

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +  +    TN+  +H+D++   +A   A    F   +P   
Sbjct: 172 -------------------LSPVLEIVTNIDHEHVDHYADLEAVK-AAFLEFINRIPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+  DD     ++                             ++ +   S + +    
Sbjct: 212 AAILCLDDDNVTALLPMIRKRVITYGLSSQADIQAREITTRGFISRFE-VWSRQQRLGKV 270

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   VYNAL A  L   + I  A +   L     V  R +  G  S G  +  DY
Sbjct: 271 SLAVPGRHNVYNALAAIALGRELEIPFATIARALNNYSGVQRRLQVKG-ESDGITVIDDY 329

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +   L  +R     R +VV        R  G        A   AD+ I+ +   
Sbjct: 330 GHHPTEIRATLAALRAAWPRRRLVVLFQPHRYSRTAGLFQDFC-TAFHDADLLILNNIYA 388

Query: 421 RSED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E              +R      +    E  +   A+   +  L + DV++  G G+
Sbjct: 389 AGEAEIPEVAGDALALALRRHGQREVSYVPELADLPTAV---LGRLQRGDVVLTLGAGN 444


>gi|18310900|ref|NP_562834.1| FolC bifunctional protein [Clostridium perfringens str. 13]
 gi|18145582|dbj|BAB81624.1| folyl-polyglutamate synthetase [Clostridium perfringens str. 13]
          Length = 440

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 131/391 (33%), Gaps = 47/391 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
                 + + GT+GK S  + +  + + +G                +             
Sbjct: 36  HKDTKFIHIGGTNGKGSTTAMISSVLREAGFKVGMYTSPYLEEFEERIQINGENINKDDL 95

Query: 164 ----------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                                 T   I  A    Y S + V +  +E    G    RLD 
Sbjct: 96  AILMGDVKKAIDKVMELGYESPTQFEIITALMFYYFSKKKVDYAVLEVGLGG----RLDA 151

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
             ++      L    +D+            +    ++    P I Y  +  + EV+K   
Sbjct: 152 TNVVLPEVVVLTSISLDHMNILGNTIEEIAKEKCGIIKSGVPVISYPQEEKALEVIKERC 211

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           N     L V       ++  +    + Q++ +S+E +  +    L G+ QV N LVA   
Sbjct: 212 NELGCNLEVVNTEDIKNII-IDKEKHVQKIEVSLEDEILEIDLGLLGDHQVKNFLVALKT 270

Query: 322 CIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            I +  +    S   ++   K     GR E +   +    + +D AH  + +  +  +I 
Sbjct: 271 LIKLRNNGVNISNEAIKQGFKKVRWIGRMEVL---NENPLVVIDGAHNIDGIRNLRNSID 327

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
              + + I ++ G  GD+       M +      D  ++ + +  R+ED E +  ++   
Sbjct: 328 KYFNFKNITLILGVLGDKQVD---EMVEEITRGVDKVVIVEPHSDRAEDIEDLYIKVEKY 384

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    +  +  EA   A    N  D+L++ G
Sbjct: 385 VKEVFKFKDYKEAYNKAYSFTNDDDLLLICG 415


>gi|332527086|ref|ZP_08403166.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111517|gb|EGJ11499.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
          Length = 473

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 83/440 (18%), Positives = 142/440 (32%), Gaps = 67/440 (15%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA+A+V+S+A    +          I VV   R   L+       G   
Sbjct: 56  GHDAAN--IE-GADAVVISTAVKGDNPEVITARARRIPVVP--RAVMLAELMRLRRG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +   +G     +     + S   ++RL +   I +    
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAEAGRDPTFV-IGGKLLSAGANSRLGSGEYIVVEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  I    TN+  DH++ +    +   +    F
Sbjct: 164 SDASFLN--------------------LMPIMAVVTNIDADHMETYGHDLSRLRSAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    AI+  DD   + +M    +       +G   +   +        + + T  
Sbjct: 204 IHRMPFYGAAIVCGDDPGVRAIMP-MLSRPVVSYGLGEDVQVRAVDVEALPGGRMRFTAQ 262

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D      LPG   V NAL A  + + + +     +  L     V  RF+  G
Sbjct: 263 RRNGVALPDLSITLNLPGVHNVCNALAAIAVAMELELPDEPTVRALAGFTGVGRRFQRWG 322

Query: 351 -------TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV----FGCGGDRD--QG 397
                         +  DY H    +  ++   R    GR +V+          RD  + 
Sbjct: 323 ELPVSAARGGGSFTLIDDYGHHPAEMAAVVAAARGAFPGRRLVLAFQPHRYTRTRDCFED 382

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR-----IEAIR-- 450
              +MG      AD  ++T+     E P  I A     +   +    +     ++AI   
Sbjct: 383 FVKVMGS-----ADAVLLTEVYAAGEAP--IVAADGRALARALRVAGKVDPVFVDAIAEL 435

Query: 451 -TAIEM-LNKQDVLVVAGKG 468
             AI       DV++  G G
Sbjct: 436 PQAIAEFAQDGDVVIAMGAG 455


>gi|310816183|ref|YP_003964147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
 gi|308754918|gb|ADO42847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
          Length = 466

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 126/412 (30%), Gaps = 52/412 (12%)

Query: 67  GAEAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAV 120
           G   +V S   +                 + V ++   F   +A R +        ++ V
Sbjct: 66  GVRLLVTSPGIAHLYPKPHPVIAAAWAAFVPVDNDIGLFFRSYADREWDDFDIRPRVVTV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ ++ +  I +  G  +   G            R      + L          
Sbjct: 126 TGSNGKSTTSALLHHILEECGRPAQLAGNIGRGVLDLPPARDGEVVVLEL---------- 175

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                    SS+  D  R   +       TN+  DH+D H     YF AK RLF E  P 
Sbjct: 176 ---------SSYQTDLAR--ALTPDIAVLTNMSPDHLDRHAGMGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-- 298
            +       D      +      G     V +      L+        ++  ++   K  
Sbjct: 225 RAVI---GVDENEGRYLANQLIEGPGDDRVIFTSSGQKLESAAWSVFARKGFLTEWRKGR 281

Query: 299 -----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D   +  LPG     NA  A  +  ++G+    +   L     +P R + +G   
Sbjct: 282 QIASIDLRQVVGLPGAHNHQNACNAYAVARSLGLGPKAIEAALHSYPGLPHRSQRIGEKD 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A   +S    L+  + I   R I           G  P +G +        
Sbjct: 342 GVIFVNDSKATNVDSAAKALQAFQNI---RWICGGLEKEGGLGGLLPHVGSVKKAY---- 394

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++  D P         A  + G+          +A+  A       D++++A
Sbjct: 395 VIGRDAPHF-------ALQLTGVE-AEICTTMGQAVAQAFADAEPGDIVLLA 438


>gi|295110282|emb|CBL24235.1| folylpolyglutamate synthase/dihydrofolate synthase [Ruminococcus
           obeum A2-162]
          Length = 432

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 64/176 (36%), Gaps = 7/176 (3%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+   G+ ++       + +     + A   +        V +  + L         + 
Sbjct: 238 QTLEYRGETYELSLAGSYQTENAALALDALEVLNHKGYPTTVEQRKKGLRETKWN-GRLT 296

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDL 409
              R     VD AH   + +M+  ++R    GR +  + G   D+D      + +     
Sbjct: 297 IIHRDPLFIVDGAHNPAAADMLEDSVRKYFKGRNMYFIMGVFRDKDYSY---IIRKLCPY 353

Query: 410 ADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           A+  +   T DNPR+   +++   +    P      N  +A+     M +++DV++
Sbjct: 354 AEQIVTIETPDNPRALPAQELAEAVRECNPHVQAAENIQDAVNKVFAMADREDVIL 409


>gi|254462310|ref|ZP_05075726.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           HTCC2083]
 gi|206678899|gb|EDZ43386.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 471

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 135/428 (31%), Gaps = 49/428 (11%)

Query: 56  GHLFIPQAIAQ--GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
           GH+F+ Q       AE +V+SSA      +     R   P++        L         
Sbjct: 63  GHIFVGQKAENLESAEVVVISSAIKSGNPELDEARRRGLPVVRRAEMLAELMRL------ 116

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
              +  +AV GT GK++  + V  +          +     I ++  + R+         
Sbjct: 117 ---KLNIAVAGTHGKTTTTTMVATLLDAGKFDPTVV-NGGIIHAYGSNARMGQGE----- 167

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                        + VEA       +RL          TN+  +H+++  T++       
Sbjct: 168 ------------WMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGTEENLHQ-GF 211

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQ 289
             F   +P    AI   DDA  + ++ +  +          Q     +            
Sbjct: 212 LDFTSNIPFYGLAICCTDDADVQTLVGKLTDRRVVTYGFNAQADVRAVGLHYKGGVAMFD 271

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               + +        P+PG+  V NAL A  +   +G+    +   L     V  RF  V
Sbjct: 272 IHLQNEDQVIEGCSLPMPGDHNVSNALSAVAVARHLGMSGDEIRRALAAFGGVNRRFTKV 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                G  I  DY H    +  +LK  R  + GR+I +      R               
Sbjct: 332 A-EIDGVTIIDDYGHHPTEISAVLKAARQASEGRVIAI--HQPHRYTRLHHHFEDFCSCF 388

Query: 410 --ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             AD+  +T+     E+P +       +   I HG         + E      E     D
Sbjct: 389 NEADVVAITEIYAAGEEPIEGASRDDLVAGLIRHGHRHARSITTQDELTALVKEQAKPGD 448

Query: 461 VLVVAGKG 468
           ++V  G G
Sbjct: 449 MVVCLGAG 456


>gi|327441157|dbj|BAK17522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Solibacillus
           silvestris StLB046]
          Length = 450

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 128/426 (30%), Gaps = 61/426 (14%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFS----ATIRSNTPI---LVVDNTRKFL---- 102
            D +    + +++G   ++                      P    +V D   K L    
Sbjct: 43  FDANSEAQELLSKG-ITVICGRHPEDLLDEGFELVVKNPGIPYTNPIVADAIAKGLPVIT 101

Query: 103 -SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
               A  +        + +TG++GK++  + + ++ +   L     G   T++       
Sbjct: 102 EIELAYLVSEAP---FIGITGSNGKTTTTTLLFEMLKVGRLKPLIAGNIGTVACGV---- 154

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                            ++    +  E SS  L   R    +      TNL   H+DYH 
Sbjct: 155 --------------AAEAKADEVIVTELSSFQLMGTR--EFRPHIAILTNLYEAHLDYHG 198

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T + Y  AK  +       +        +A  + V K A  +  +++    +G       
Sbjct: 199 TFEEYAEAKFGVTRNQTADDYFIY----NADQEVVAKYAQKSKAKLIPFTTKGHANEGIS 254

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               +   Q    ++  +       PGE  + N L A    +        + E L     
Sbjct: 255 ADKENIYWQGDAILKRDNIVL----PGEHNLENILCAVAAALLQQCPVEAIEEVLGTFAG 310

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--- 398
           V  R +FV             A    + +  L           IV+   G DR       
Sbjct: 311 VRHRTQFVREWQGRKIYNDSKATNVLATKSALAAFEQ-----PIVLLAGGLDRGHSFEEL 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           R  M ++      +    +   R  +  K       GI   +   +  +A+    +M  +
Sbjct: 366 RKEMTRVKA----VVAFGETALRFIEFAKSC-----GITNIVRAIDVEDAVGYGAKMSEE 416

Query: 459 QDVLVV 464
            D++++
Sbjct: 417 GDIILL 422


>gi|225023733|ref|ZP_03712925.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC
           23834]
 gi|224943615|gb|EEG24824.1| hypothetical protein EIKCOROL_00597 [Eikenella corrodens ATCC
           23834]
          Length = 486

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 138/435 (31%), Gaps = 58/435 (13%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLY 110
             GH    + I  G + +V S+A    +    A   +  P++     R   L+       
Sbjct: 74  FHGH--AAEHIE-GVDVVVTSTAIKPDNPEVLAAREAGIPVI----PRAMMLAEIMRFGQ 126

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           G      +A+ GT GK++  S    I   +G   +F IG    +++   + +L     I 
Sbjct: 127 G------IAIAGTHGKTTTTSLTASILTAAGLDPTFVIG--GKLTAAGTNAKLGGGQYIV 178

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S  S                       +  +    TN+  DH+D +       + 
Sbjct: 179 AEADESDASFLY--------------------LTPVITVVTNIDTDHMDTYDHSVDKLHQ 218

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    A +  D  + + ++                    +   V +   + 
Sbjct: 219 AFVEFVHRMPFYGKAFLCIDSEHVRAILPEIQKPFATYGLDETADI--YADNVHSEGAQM 276

Query: 290 QVTISVEGKD---FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             T+ +  +    F+     PG   V NAL A G+ +  G D   +   L     V  RF
Sbjct: 277 CFTVHLNKRSIAPFEVRLNAPGRHNVLNALAAIGVALECGADVEAIQRGLAGFGGVGRRF 336

Query: 347 EFVGTNSRGGR----IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRP 400
           +  G           +  DY H    +   L   R      R+++ F      R +    
Sbjct: 337 QSYGEIKLPQGGSALVIDDYGHHPVEMAATLSAARGAYPESRLVLAFQPHRYTRTRDLFE 396

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAI 453
              ++    AD  ++TD     E+P        +   +   G    I   +  +   T +
Sbjct: 397 DFVRVLNT-ADAVVLTDVYAAGEEPIVAADSRALTRALRVAGKLEPIYCADVADMPATLL 455

Query: 454 EMLNKQDVLVVAGKG 468
            ML   D+L+  G G
Sbjct: 456 NMLQDGDLLLNMGAG 470


>gi|303327587|ref|ZP_07358028.1| tetrahydrofolate synthase [Desulfovibrio sp. 3_1_syn3]
 gi|302862527|gb|EFL85460.1| tetrahydrofolate synthase [Desulfovibrio sp. 3_1_syn3]
          Length = 440

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 120/370 (32%), Gaps = 22/370 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           + P  ++ + GT+GK S A+F+  +C   G  +        +S   +      P P    
Sbjct: 53  RPPFRVVQILGTNGKGSTAAFLASLCMAHGCKTGLYTSPHFVSPEERIRVDGRPWPAESW 112

Query: 172 KALSY--LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
            A +   ++           +   L   R + + +       +    +           A
Sbjct: 113 TAHANEIMAVAPDLTYFEFLTILALLLFREEKVDVT------VLEAGLGGRHDATTAVPA 166

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            +  +  +       +     A + +             +  +      L++    H   
Sbjct: 167 DLLCYAPVALDHRDVLGPTLTAIATDKAAAVRGPAPVCTAPQFPEAARCLEEAARAHKAM 226

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV------LEHLEKLHVVP 343
               +           L G  Q+ NA +A      +               H      +P
Sbjct: 227 LFQAAPLPAASAPGLGLAGPHQMVNAGLALAAWRHLAPLLDKNADNTTAQAHGLAHAFLP 286

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR + V        + +D AH  + +  +L+ +          VF C GD+D     +M 
Sbjct: 287 GRLQSVPGTKDSPPLLLDGAHNPHGMRALLRALDEAGIRPAGAVFSCLGDKDWHTSALML 346

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRI--EAIRTA--IEML 456
           K  L  A + I   DNPR+ DP ++      G+P     + +G R   +A+  A  +E  
Sbjct: 347 KHWLGAAPLFIPALDNPRAADPREVARA-CDGLPPATATVFEGPRALPDALAAARRLESA 405

Query: 457 NKQDVLVVAG 466
           + +  +++ G
Sbjct: 406 DPERPVLLTG 415


>gi|269792484|ref|YP_003317388.1| UDP-N-acetylmuramate/alanine ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100119|gb|ACZ19106.1| UDP-N-acetylmuramate/alanine ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 483

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 121/378 (32%), Gaps = 38/378 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +   S ++       + V GT GK++ +S +  + +R  +S         +     + +L
Sbjct: 104 AEVLSAIFNH--RRGIGVAGTHGKTTTSSMLALVMERCDMSPTVA-IGGELCDIGCNAKL 160

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            +                      ++ S    +              TN+  DH+D++ +
Sbjct: 161 GSGDV---------------MVAELDESDGSFEL-----FSPQVAVVTNVDWDHVDHYAS 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                +A    F   +      +I A+D  ++ V+    + G   +     G       V
Sbjct: 201 VDQVTDA-FVRFVGKIKDGGALVICAEDGGNQRVLNGIQSGGDVHVIRYGWGTSWDWGAV 259

Query: 283 CAI----HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                     +                + GE  V NAL    +    G+    V + L+ 
Sbjct: 260 NVHPLKGGGIEADVYRRGELRGHISLSVSGEHNVLNALATCAVADLFGVSFESVAKVLKS 319

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQ 396
                 R + VG ++ G  +  DY H    ++  +  +R    GR I+V        R Q
Sbjct: 320 FRGAKRRLQRVG-SADGIDVLDDYGHHPREIKATISAVRGALPGRRILVVFQPHRYTRTQ 378

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIR 450
                   +   LAD + +    P  E+P +      I      G+   +   +  +A+ 
Sbjct: 379 AMYRDFASVLA-LADRSFILPIYPADEEPIEGVSSDLIAGSFPDGVGDPVCCDSFEDAVE 437

Query: 451 TAIEMLNKQDVLVVAGKG 468
              E     DV++  G G
Sbjct: 438 RVRETCVPGDVVLTVGAG 455


>gi|254421594|ref|ZP_05035312.1| cyanophycin synthetase [Synechococcus sp. PCC 7335]
 gi|196189083|gb|EDX84047.1| cyanophycin synthetase [Synechococcus sp. PCC 7335]
          Length = 925

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 15/200 (7%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           +L  +      + +             P      +  +L      + I    A +     
Sbjct: 663 YLSIIQQDWLHRIIKAERVPLTMGGRAPFMIANALAASLAGFVQGVKIEQIRAALHSFQP 722

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               +PGR              VDYAH       I   ++    G  I V G  GDR   
Sbjct: 723 SASQIPGRMNLFDMG--NYHALVDYAHNPAGYAAIGSFVKN-WPGPAIGVVGAPGDRRDE 779

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPG-----------FIEKGNR 445
               +G++++D+ D  I+ +D + R   P  + A I  GI             +  + + 
Sbjct: 780 DLIELGQLSVDIFDQVIIKEDKDRRGRSPGAVAALIEQGILQTDESQRSTDFSYHIELDE 839

Query: 446 IEAIRTAIEMLNKQDVLVVA 465
            EA+  A++      ++V+ 
Sbjct: 840 SEAVNHALDSAPDNCLVVIL 859


>gi|91785292|ref|YP_560498.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
 gi|123168040|sp|Q13TZ3|MURC_BURXL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91689246|gb|ABE32446.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
          Length = 467

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 134/436 (30%), Gaps = 65/436 (14%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPEN 116
           I  A     GA A+VVS+A    +       +  I +V   R   L+       G     
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I      S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH+D +    A        F 
Sbjct: 165 DASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP    A++  DD   KE++        R        +   +             +  
Sbjct: 205 HRLPFYGIAVLCVDDPNVKEILPFVSKPIIRYGFAPD-AQVRAVNVQARDGKMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +    D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G     
Sbjct: 264 DAAPLDIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVF 323

Query: 356 --------GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                     +  DY H    +   +   R    GR  +V      R    R        
Sbjct: 324 SEGSTNGAYTLVDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVK 382

Query: 408 DLA--DIAIVTDDNPRSEDP------EKIRAEIIHG-------IPGFIEKGNRIEAIRTA 452
            L+  D  ++T+     E P        +   +          +    E  + + AI   
Sbjct: 383 VLSTVDALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAI--- 439

Query: 453 IEMLNKQDVLVVAGKG 468
              +   DV++  G G
Sbjct: 440 ---VRDGDVVITMGAG 452


>gi|317402449|gb|EFV83018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Achromobacter
           xylosoxidans C54]
          Length = 510

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 142/430 (33%), Gaps = 56/430 (13%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSA------TIRSNTPIL-VVDNTRKFLSLFASRLYGKHPE 115
           A+  G   +VVS   +     A             ++  ++   + L+  A     +   
Sbjct: 74  ALLDGVSQVVVSPGLAPDGAPAGDLLREAKARGIEVIGEIELFARALAELAETREYRP-- 131

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +LAVTGT+GK++V +  + +   SGLS    G               +P+ +  A   +
Sbjct: 132 RVLAVTGTNGKTTVTALTRDLVAASGLSVLAAGNI-------------SPAALT-ALMQA 177

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             +        +E SS  L+      +   A    N+ +DH+D+H        A  R   
Sbjct: 178 LDADDLPQVWVLELSSFQLET--THTLMADAAVVLNVTQDHLDWHGGMD----AYARTKA 231

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---------SVGYQGKFIHLKKVCAIH 286
            LL     AI+  DD Y+ +++        R            +G +        V A  
Sbjct: 232 RLLKMTRIAIVNRDDPYTVDMVPSLAAMPVRSFGREVPELVGDMGLELGQGVAWLVAAEP 291

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE-----KLHV 341
                 ++   +  D   P   + ++   +    L I    ++   L  L+      L  
Sbjct: 292 LDFDEPVAPVRRKKDAPEPTRAKGRMSRLMPVDALRIRGIHNALNALAALQLARCLDLGW 351

Query: 342 VPGRF-------EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            P          E            VDY + S    +          G+ +V+   G  +
Sbjct: 352 GPMLRALREYAGEPHRAAFVRSIGGVDYINDSKGTNVGATVAALEGMGQPVVLIAGGQGK 411

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            Q   P++  +    A   ++       +D  +I   +       I   +  +A+R A E
Sbjct: 412 GQDFSPLIP-VVSRHARAVLLI-----GQDGPEIGRVLAATGVDCIAVESLRDAVRRAAE 465

Query: 455 MLNKQDVLVV 464
           +    DV+++
Sbjct: 466 LAQAGDVVLL 475


>gi|241518511|ref|YP_002979139.1| cyanophycin synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240862924|gb|ACS60588.1| cyanophycin synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 910

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 118/354 (33%), Gaps = 35/354 (9%)

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +G TS+   +    R+          A   L    +    +E +  GL +  L     
Sbjct: 522 QIVGMTSSNGVYIDGRRIMEGDCTGPRSARVVLGEPTIDVAVLETARGGLLREGLAFNAC 581

Query: 205 IAGSFTNLGRDHID-YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             G  TN+  DH+            A   +  E + ++  +I+ ADD     + + A   
Sbjct: 582 DIGCVTNVTADHLGLRGVHSVEDLAAVKSVVVEAVHEDGWSILNADDPLVAAMREEAGGH 641

Query: 264 GCRVLSVGYQGKFIHLKKVCAI------------------HNKQQVTISVEGKDFDFLFP 305
            C   +   +     LK                       ++K Q  +     +      
Sbjct: 642 ICYFSTKAPKQWPDFLKDHVFHGGRALGCDLATGLFDMILYDKAQKMLICRVDEIPATMN 701

Query: 306 LPGEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               F V NAL A+ + +  G+        +           GR         G RI VD
Sbjct: 702 GMAAFNVENALAASAMAVCNGVPLPVIREALRSFGTSYEQSAGRL--NMVEREGVRIIVD 759

Query: 362 YAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD- 418
           YAH    L  + + +  + +G    I V G GGDR       MG+IA  + D  I+ +D 
Sbjct: 760 YAHNPGGLRALGRLVGKLRTGNSSCIGVVGIGGDRRDQDIYEMGEIAASVFDRLILKEDY 819

Query: 419 NPRSEDPEKIRAEIIHGIPGF------IEKGNRI-EAIRTAIEMLNKQDVLVVA 465
           + R     ++ A +  G          +E   R  EA+  A+      D++VV 
Sbjct: 820 DLRGRSAGEVVAILRQGALKAGFDASKLEVVLREHEAVERALGSALNDDLIVVT 873


>gi|118496694|ref|YP_897744.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           novicida U112]
 gi|194324001|ref|ZP_03057776.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208780034|ref|ZP_03247377.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
 gi|166224690|sp|A0Q425|MURC_FRATN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118422600|gb|ABK88990.1| UDP-N-acetylmuramate-alanine ligase [Francisella novicida U112]
 gi|194321898|gb|EDX19381.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           novicida FTE]
 gi|208744038|gb|EDZ90339.1| UDP-N-acetylmuramate--alanine ligase [Francisella novicida FTG]
          Length = 451

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 93/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +              + +     I       I  +G D  F   LPG++ V NA      
Sbjct: 229 SDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGKYNVQNATACIIA 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I 
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALSLADQLILLPTYSAGEQIIKGAESQDIA 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++       AI    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHAIYFLEKLANENTVILIQGAG 440


>gi|182435249|ref|YP_001822968.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|229620435|sp|B1VWF9|MURC_STRGG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|178463765|dbj|BAG18285.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 466

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 136/411 (33%), Gaps = 41/411 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          + VV  +   L+   + L        +AV GT GK+
Sbjct: 70  ASCVVVSSAIRADNPELLRAGELAVPVVHRS-DALASLMNGL------RAIAVAGTHGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +       GL +        +     +               S  S Q       
Sbjct: 123 TTTSMLAVALSSLGL-APSYAIGGDLEGPGTNATHGEGDIFVAEADESDRSFQKYD---- 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH   + +    +++      +++P  +  +  
Sbjct: 178 ----------------PEVAIVLNVELDHHANYASMDEIYDSFETFVGKIVPGGTLVVSA 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                 +   +    +  +V++ G  +   + + KV       +VT+ + GK   F   +
Sbjct: 222 DQPGAVELTRRVRDLSDLKVVTYGCAEDADVRVHKVTPRGLTSEVTVLLNGKFLTFTVSV 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG    +NA+ A    +A+GI +  +   L     V  R +  G  + G ++   YAH  
Sbjct: 282 PGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVKRRLQLKG-EAAGVQVIDSYAHHP 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   L+ +R   +   I+V        R Q     MG+     AD ++V D  P  ED
Sbjct: 341 TEMTADLEAMRGAAADARILVVFQPHLFSRTQELGTEMGQALAR-ADASVVLDIYPARED 399

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           P        I               ++ + +  A+  M    D+++  G G
Sbjct: 400 PIPGITSALIIDAAKEAGAEVTAVHDQAD-VPAAVAGMAKSGDLVLTMGAG 449


>gi|319791669|ref|YP_004153309.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
 gi|315594132|gb|ADU35198.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
          Length = 494

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 140/432 (32%), Gaps = 55/432 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A A   GA+A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAAHIEGADAVVTSTAVQSDNPEVLAAREKRIPVVPRAL-MLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +   +G   +F IG    ++S   + +L +   I +    S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLDAAGLDPTFVIG--GRLNSAGANAQLGSGDYIVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH++ +    A        F 
Sbjct: 165 DASFLN--------------------LLPVMAVVTNIDADHMETYGHDFAKLKKAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI+  DDA  ++++ +                 +    V A+  +   T   
Sbjct: 205 HRMPFYGVAILCTDDAAVRDIVAQVTCPVTSYGFGE--DAQVRAVDVRAVGGQMHFTAQR 262

Query: 296 EGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  D   +  LPGE  V NAL    + + +GI    V   L     V  RF+  G 
Sbjct: 263 RNGVTLPDLPIVLNLPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGE 322

Query: 352 NSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR---PIMG 403
            S         +  DY H    +   +   R    GR  +V      R    R       
Sbjct: 323 VSVPGGTGSFTVIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFV 381

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EML 456
           K+    AD  ++ +     E P        +   +           + I A+  A+ +  
Sbjct: 382 KVIGT-ADSVLLGEVYAAGEAPIVAADGRTLARALRVAGKVEPVFVDDIAAMPQAVLDNA 440

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 441 RPGDVVLSMGAG 452


>gi|310643587|ref|YP_003948345.1| udp-n-acetylmuramate--l-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309248537|gb|ADO58104.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 460

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 138/413 (33%), Gaps = 43/413 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A S  +          I     T     + A  L  +     +AV G  G
Sbjct: 63  AGADIVVYSTALSRDNVERVAAEELNIP----TLHRSQMLARLLNER---KGIAVAGAHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  + +R  +                   +       L        S+ V   
Sbjct: 116 KTTTSSMIALVMERCNVD---------------PTYIIGGEITNLGTNAKAGKSEFVVAE 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+    L  H   GI       TN+  DH++ +        +    F   +  +  AI
Sbjct: 161 ADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAI 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           + ADD   +E++ +                      +     +   T+S +G        
Sbjct: 215 VCADDQNIREMLPQLQTRVITYGVEHEADYM--ATDIQLGDRRLSFTMSRKGTALGTIEL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  +YNA+     C+  GI    +   + + H    RF+ +G  +    I  DYAH
Sbjct: 273 SVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFHGAKRRFQVLGEGN-DILIIDDYAH 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPRS 422
               +E  +   R  T  RII VF      R         +   + A+  I+TD  +P  
Sbjct: 332 HPTEIEATISAARA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFSE-ANEVIITDIYSPAG 389

Query: 423 ED------PEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E         K+   I+       I    +   I    + L   D+++  G G
Sbjct: 390 EKQIAGVHSSKLVDLIVQNSNANAIYLPTKEAVIEELKDRLQPGDLVLTMGAG 442


>gi|253575689|ref|ZP_04853025.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845027|gb|EES73039.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 458

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 137/413 (33%), Gaps = 45/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V S+A    +           P+L          + A  L  +   N +AV G  
Sbjct: 65  GADLVVYSTALPQDNVERLEAQEQGIPVLHRS------QMLARLLNER---NGVAVAGAH 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++ +S +    +  G     I     I     + +      + +A+A     S    +
Sbjct: 116 GKTTTSSMIALAMELCGTDPTYI-IGGEIMDMGTNAKAGQGKCV-VAEADESDGSFLQYY 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            S+                      TN+  DH++ +             F   +  +  A
Sbjct: 174 PSLGV-------------------VTNIEADHLENYGGDFNRLKEAYVQFLNQIKPDGKA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD   +E++ R  +                  ++       ++    + +      
Sbjct: 215 VVCGDDPNIRELLPRVQSPTITYGIETNCDYTAREIELGDRCVTFKM-YQGDRELGTVEL 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   VYNA+    +C+  GI    V++ L   H    RF+ +G    G  I  DYAH
Sbjct: 274 SVPGRHNVYNAMATVIVCMEAGIPFDEVVKALRHFHGAKRRFQVLG-EKNGILIIDDYAH 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPRS 422
               ++  +   +  T  RII VF      R         +   D AD  I+TD  +P  
Sbjct: 333 HPTEIQATIAAAKA-TGKRIIAVFQPQRYTRTFFLLDAFSRAFGD-ADEVIITDIYSPAG 390

Query: 423 EDP------EKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E         K+   I     PG      + + I      L   D+++  G G
Sbjct: 391 EKAIEGVSSSKLVELIKQNSNPGARYLPTKQDVIADLQHRLKPGDLVLTMGAG 443


>gi|294793907|ref|ZP_06759044.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
 gi|294455477|gb|EFG23849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
          Length = 456

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 97/289 (33%), Gaps = 18/289 (6%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S      +  E SS+ L+   +   + I     N+  DH+  H+T + Y  AK R+FE 
Sbjct: 152 YSMPADGFLVAELSSYQLET--IKHFRPIGAIILNITPDHLARHKTMENYIAAKERIFEN 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L  +   +   DD    ++  RA +   ++          +                 +
Sbjct: 210 QLSTDYLVL-NIDDPVVADMEHRAPSHILKISQKKAVENGAYYAD---GQCYIAKDGVAK 265

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               D    +PG   + N L    L  A+G+    +   + + H V  R E V T     
Sbjct: 266 FVIADEDIHIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKTIDGIT 325

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                 A   +S+   L++         +++   G D+       M ++  +     I  
Sbjct: 326 FYNDSKATNVDSVVKALESFDQ-----QVILLAGGHDKMTPLEDFM-QLVKEHTKAVIFM 379

Query: 417 DDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   R E   K       G+       +  EA+    ++    D++++
Sbjct: 380 GEAADRFEMAAK-----EAGVKPIYRALSMKEAVEQGYKLAETGDIVLL 423


>gi|254673375|emb|CBA08647.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha275]
          Length = 429

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 24  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 73

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 74  THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 131

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 132 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 171

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 172 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 229

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 230 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 289

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 290 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 348

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 349 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 408

Query: 464 VAGKG 468
             G G
Sbjct: 409 NMGAG 413


>gi|124009921|ref|ZP_01694587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microscilla marina
           ATCC 23134]
 gi|123984072|gb|EAY24445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microscilla marina
           ATCC 23134]
          Length = 502

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 113/368 (30%), Gaps = 16/368 (4%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GKS+       +  ++G      G      +    +   
Sbjct: 107 EFAARYTK---AKMIGITGSNGKSTTTLLTHHLLTQAGFKVGLAGNIGESFAKQVVDDAY 163

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLIAGSFTNLGRDHIDYHQT 222
               + ++        +   H+S+  +       R  + I     S   + +        
Sbjct: 164 DFFVVEVSSFQLDNCYEFRPHLSMLINITEDHMDRYENNINKYIASKFKVIQKQTPEDYF 223

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG------KF 276
                +A +    + + +    +   ++      +        +                
Sbjct: 224 LYNIDDANVTERLQKITEGIVGVSEGEEPAPNRTLPYCLPISLKNADPEKAKEQSLSYWD 283

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                +    + +               PLPG+  ++NA++A   C  +G    ++ E L
Sbjct: 284 EENGNIVLNFSDRGSDEQKTMTVPVADLPLPGKHNIFNAMIALQACHILGASPVVLHEGL 343

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           +     P R E V   S    I    +   +S    L +I+     R +V    G D+  
Sbjct: 344 KNFSNAPHRMEEVAELSEVKFINDSKSTNIDSAFYALDSIKMGEDERKLVWIAGGVDKGN 403

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               I   +A  +  +  +  DN   E       E +H      +     EA+  A ++ 
Sbjct: 404 DYEKIRDLVAKKVKILICLGLDN---EKLHNTFRETVHVTIRTQQI---NEAVEQAFDLA 457

Query: 457 NKQDVLVV 464
              D +++
Sbjct: 458 RPGDTVLL 465


>gi|295104114|emb|CBL01658.1| UDP-N-acetylmuramate--L-alanine ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 461

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 86/270 (31%), Gaps = 11/270 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        N+  DH+DY+ +      A  R            I    D  +   +    
Sbjct: 182 LTPYLSVVLNIDNDHLDYYGSMGELKFAFKRFALM----TQFMIFANADDKNTMDVMYTL 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAA 319
           +   R  ++   G +  +          +  +              +PG   +YNAL   
Sbjct: 238 DRRVRTFAIDNHGDYRAVNINEYKPGFFEFDLKEWNTTDTTRIRLSVPGRHNIYNALAMC 297

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +C  +G+ +    E          RFE  G    G  +  DYAH    L   L   + +
Sbjct: 298 AVCRFVGLSAEQCAEAALNFKGAGRRFEVYG-ECNGALVIDDYAHHPTELRATLNTAKEM 356

Query: 380 TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGI 436
              R+I V       R +        +   + DI ++T      E  DP    A++   I
Sbjct: 357 GYKRLIAVHQPFTYSRTKMLFNDFVDVL-KIPDITVLTPIMGSREPNDPTITSAKLAAQI 415

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           PG +   +  EA     +     D+++  G
Sbjct: 416 PGSVLVNSLQEAADWVKQNAQPGDLVITLG 445


>gi|56696089|ref|YP_166443.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria pomeroyi DSS-3]
 gi|81350286|sp|Q5LU62|MURC_SILPO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56677826|gb|AAV94492.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria pomeroyi DSS-3]
          Length = 465

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 133/415 (32%), Gaps = 47/415 (11%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +         P++   +    L            ++ +A+ GT 
Sbjct: 70  GAAVVVISSAIKPGNPELDGARAQGLPVVRRADMLAELMRL---------KSNIAIAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + + ++    G     I     I +++ + R+                      
Sbjct: 121 GKTTTTTMMAELMVAGGFDPTVI-NGGIIHAYSSNARMGQGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++  + +A        F   +P    A
Sbjct: 163 MVVEADESDGSFNRLPATV---AIVTNIDPEHMEHWGSIEALRQ-GFYDFVSNIPFYGIA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDF 302
           +   D A  + ++ R  +   R      Q                   +    +      
Sbjct: 219 VCCTDHAEVQALVGRITDRRVRTYGFNAQADVRATNLTYKGGVAHFDILLQHEDMVIEGC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAVAVARHLGMKADEIRAALAAFGGVNRRFTKVG-EVNGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    +  +LK  R  + GR+I V      R      +          AD+  + +   
Sbjct: 338 GHHPVEIAAVLKAARQASEGRVIAV--HQPHRYSRLSNLFDDFCACFNEADVVAIAEVYA 395

Query: 421 RSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P         +   I HG        +  +  R   E     D++V  G G
Sbjct: 396 AGEAPIPGADRDALVAGLIRHGHRHARAILSEEDLERLVREQTRPGDMVVCLGAG 450


>gi|89893538|ref|YP_517025.1| hypothetical protein DSY0792 [Desulfitobacterium hafniense Y51]
 gi|219666866|ref|YP_002457301.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
 gi|89332986|dbj|BAE82581.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537126|gb|ACL18865.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
          Length = 435

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 135/408 (33%), Gaps = 44/408 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVV+SA   ++     R+    + V +  +FL    S+      +  +AV GT GK++  
Sbjct: 51  IVVASAAYGENHEEIARARELNIPVYSYPQFLGRLMSK------KRGIAVAGTHGKTTTT 104

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           + +     +SG   +  +G           +           +   +  +    +     
Sbjct: 105 AMIGLALLQSGIDPTIVVGSDVPSIGGNAYSGQGDFFLAESCEYRRHFLNYSPEY----- 159

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  DH DY +       A      + +P      I+ +
Sbjct: 160 -----------------LIITNIEFDHPDYFKDLDDVVCA-FSEIAQKIPPHGRIFIWHE 201

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPG 308
           D   K +  +       +     +   ++   +        +TI +      +F   + G
Sbjct: 202 DPQRKAIQAQ----SPIITFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSG 257

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL +  LC+ IG+ +  VLE L   +    RFE +G N+ G  I  DYAH    
Sbjct: 258 KHNILNALASIALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNA-GALIVDDYAHHPTE 316

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NP 420
           +   L+  R +    RI  VF         K       +   AD  ++ +        N 
Sbjct: 317 IRSTLEGARLSFPDRRIRAVFQPHTFSRTEKLLQEFSQSFQAADEVVIAEIFASARETNL 376

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     +   I           +  E      + L+  D+++  G G
Sbjct: 377 NTISASSLADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLTLGAG 424


>gi|55820797|ref|YP_139239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMG 18311]
 gi|55822698|ref|YP_141139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus CNRZ1066]
 gi|62900662|sp|Q5M0D5|MURD_STRT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900663|sp|Q5M4Y2|MURD_STRT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|55736782|gb|AAV60424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus LMG 18311]
 gi|55738683|gb|AAV62324.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus CNRZ1066]
 gi|312278122|gb|ADQ62779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus ND03]
          Length = 450

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 140/427 (32%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS----- 103
            DG  F         + +G + +       L D +  +    P +  DN     +     
Sbjct: 38  NDGKAFEENPSAQSLLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNPMVARALEKEI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + +  +    G S    G     +S  
Sbjct: 98  PVWTEVELAYLVSEAP---IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
               +T    +                  +E SS  L    ++         TNL   HI
Sbjct: 155 A-QSVTNQDTL-----------------VMELSSFQL--MGIESFHPHIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  AK  +  E+   +   + +  D     + K         +      + +
Sbjct: 195 DYHGSFEEYVAAKWNIQNEMTSDDFIILNFNQD-----LAKELATQTNAQVVPFSTVEKV 249

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +       +  + +   +      +PG   V NAL    +    G+ +  + E L 
Sbjct: 250 DGAYLENGGLYFKGELLMHADEL----GVPGSHNVENALATIAVAKLSGVSNQAIKETLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FV T           +     +    K +    + ++I++   G DR   
Sbjct: 306 SFGGVKHRLQFVDTIDDVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I   L  + I+ +  PR       RA    G+  +++  +  +A R A E  +
Sbjct: 362 FDELIPDITG-LKKMVILGESAPR-----VKRAADKAGVT-YLDAKDVADATRIAFEQAS 414

Query: 458 KQDVLVV 464
             DV+++
Sbjct: 415 AGDVVLL 421


>gi|94994757|ref|YP_602855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10750]
 gi|118595696|sp|Q1J5S5|MURD_STRPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94548265|gb|ABF38311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10750]
          Length = 452

 Score = 66.1 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 134/417 (32%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFAS 107
             QA+  +G + I  S    L D +       P +  DN   ++ L+           A 
Sbjct: 48  AAQALLEEGIKVICGSHPVELLDENFEYMVKNPGIPYDNPMVKRALAKEIPILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +    G S+   G     +S            
Sbjct: 108 FVSEAP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASKVV--------- 155

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      +     + +E SS  L    ++  +      TNL   H+DYH + + Y 
Sbjct: 156 ---------QKAIAGDTLVMELSSFQLV--GVNAFRPHIAVITNLMPTHLDYHGSFEDYV 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +  ++   +   +  A+   S  + K          +            +     
Sbjct: 205 AAKWMIQAQMTESDYLIL-NANQEISATLAKTTKATVIPFSTQKVVDGAYLNDGILY--- 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL    +    GI   ++ + L     V  R +
Sbjct: 261 -----FKEQAIIAATDLGVPGSHNIENALATIAVAKLSGIADDIIAQCLSHFGGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG            +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 316 RVGQIKDITFYNDSKSTN---ILATQKALSGFDNSRLILI-AGGLDRGNEFDDLVPDLLG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + I+       E  E+++         ++E  +  EA   A ++    D +++
Sbjct: 372 -LKQMIIL------GESAERMKRAANKAEVSYLEARSVAEATELAFKLAQTGDTILL 421


>gi|169351140|ref|ZP_02868078.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
 gi|169292202|gb|EDS74335.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
          Length = 452

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 117/362 (32%), Gaps = 42/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A ++  K   + + VTGT+GK++  + + +I +    +    G           +   
Sbjct: 99  ELAYQVAKKQ--HYIGVTGTNGKTTTVTLIDKILKGQYQNVHLAGNVGMPLCDIVLDHNL 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                               ++ +E S+  L    +D  K    +  NL  DH+DY  + 
Sbjct: 157 LEE--------------ENHYIVIEMSNFQLLD--IDTFKPNVSTIINLTPDHLDYMASL 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y+ +K  +++     +   +   D    K + +         +S+  Q   +   K  
Sbjct: 201 DEYYASKTNIYKNTNKNDCFVVNLDDQVLDKYLKQYPIPCKQITMSLDNQADCMIKDKAI 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N+  + +            L G   + N ++A  +     + + ++ + +     V 
Sbjct: 261 YYQNEFIIDLDD--------IKLVGNHNLQNIMIAICIAKKCDVKNEIINQEIASFIGVE 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIM 402
            R EFV   +         A  +++  + LK  +         V    G  D+G     M
Sbjct: 313 HRIEFVKEINGIKIYNDSKATNTDASIIALKAFKQP-------VILLMGGFDKGLDLKEM 365

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              +  +  +        R +D           +   I   N  EA   AI      D++
Sbjct: 366 STYSNKIKRLVTFGAAGKRFKDEM--------HVENSICVKNLKEATLEAINNATAGDIV 417

Query: 463 VV 464
           ++
Sbjct: 418 LL 419


>gi|16332094|ref|NP_442822.1| UDP-N-acetylmuramate--L-alanine ligase [Synechocystis sp. PCC 6803]
 gi|3122411|sp|P74528|MURC_SYNY3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|1653723|dbj|BAA18634.1| UDP-N-acetylmuramate-alanine ligase [Synechocystis sp. PCC 6803]
          Length = 505

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 132/416 (31%), Gaps = 50/416 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +  +      I  N PI    +    L   A           + V GT GK++
Sbjct: 120 VVCSTAINEGNLEYQGAIAKNCPIYHRSDILAAL--IAE-------SRGIGVAGTHGKTT 170

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  + + +GL    +     + ++  +  L +   +      S             
Sbjct: 171 TSSLIGYVLKEAGLDPTIV-VGGEVDAWQGNAYLGSGEYLVAEVDESDG----------S 219

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            + H  +   +  I+L      +   + ++  +T +++    +   +  + ++  +    
Sbjct: 220 LTKHHPEIGIVTNIELDHPDHYSTLAEVVEIFRTFESHCQTLIGCLDCGVVRQHLSPTIT 279

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
               +            R         +     +                       LPG
Sbjct: 280 YSLENHPEADYQARQIKRQAHGNEVEVWERGVCL-----------------GTMTVTLPG 322

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL A  +   +G+D  ++ + +   +    RFE       G     DYAH  + 
Sbjct: 323 DHNISNALAAVAVGRLLGLDFPVIAQAIASFNGAKRRFE-CKGYCNGITFIDDYAHHPSE 381

Query: 369 LEMILKNIRT-ITSGRI-IVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE- 423
           L   L   +  +T G+   VV      R       M + A     AD+ ++TD     E 
Sbjct: 382 LLATLAAAKQKVTHGKYERVVAIFQPHRYSRTHTFMAEFATAFKDADLVVLTDIYSAGEQ 441

Query: 424 DPEKIR-----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
           +P  IR       +       + +    E      ++L   D+ +  G G+    I
Sbjct: 442 NPYNIRGEDLAKAVGQHHGHVVYQPRLTELREFLPKVLQSGDLALFLGAGNLNQQI 497


>gi|82703608|ref|YP_413174.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411673|gb|ABB75782.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
          Length = 522

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 134/426 (31%), Gaps = 59/426 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
           A+A+V S+A    +        + + VV   R   L+       G      +A+ GT GK
Sbjct: 94  ADAVVTSTAILPDNPEVLAARESKVPVVP--RAIMLAELLRLRQG------IAIAGTHGK 145

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +   +G+    +     + +     +L     I +    S  S        
Sbjct: 146 TTTTSLITSVLAEAGMDPTFV-IGGRLEAAGSHAKLGRGEFIVVEADESDASFLH----- 199

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+D ++            F + LP    A++
Sbjct: 200 ---------------LQPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFVQHLPFYGMAVL 244

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLF 304
             DDA+  E+M                       +           I  + + +    + 
Sbjct: 245 CVDDAHVLEIMPAITKPVTTYGLSETAQVRAADIRHSEGQMHFTALIGVNGKTRKLKIVL 304

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---------NSRG 355
            LPG   V NAL A  +C  +G+    ++  L     V  RF+  G           +  
Sbjct: 305 NLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQRYGEIPLTDPETGRNGS 364

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIA 413
             +  DY H    +   +   R    GR  +V      R    R +       L  AD+ 
Sbjct: 365 FTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDLFEDFVKVLSTADVL 423

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-----------FIEKGNRIEAIRTAIEMLNKQDVL 462
           ++T+     E P  I A+                          EAI     +   +DV+
Sbjct: 424 LLTEVYSAGEAPI-IAADSKSLARSLRVLGKVEPIFVERVDELEEAIH---SIARDKDVV 479

Query: 463 VVAGKG 468
           +V G G
Sbjct: 480 LVMGAG 485


>gi|257439004|ref|ZP_05614759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198589|gb|EEU96873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 467

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 106/358 (29%), Gaps = 33/358 (9%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGA---------------- 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
             A        +      VE SS  L               TN+  +H+D+H+  Q Y +
Sbjct: 157 --ALLPMLPEVRPEDVAVVELSSFQLIS---MHQSPKIAVVTNVTPNHLDHHKDMQEYID 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A  R           A++  ++  S+ + K           +        L+K   +   
Sbjct: 212 A-KRNILLYQNPPCRAVLGYENEISRSMQKDCKGRQVWFTRLHDTDNGAFLRKEDNMLCM 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +                      L+AA   +   +    + +       V  R E 
Sbjct: 271 AEDGVVTPF--LAQKDIKLRGLHNIENLLAAAAAVWGEVPVEAIQKVGSTFTGVEHRIEP 328

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T             +       L++         +++   G D+     P+  +I   
Sbjct: 329 VRTLDGVLYYNDSIGTSPTRTIAGLRSFDQ-----KVILIAGGYDKHIPYEPLAPEIVAH 383

Query: 409 LADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + D+ ++    PR E  + +R +              N   A+  A       D++++
Sbjct: 384 VKDLVLMGATGPRIE--KALREDPGFNEAALPIQHADNMQHAVELARAAAKPGDIIIL 439


>gi|219670075|ref|YP_002460510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfitobacterium hafniense DCB-2]
 gi|254766050|sp|B8FT58|MURD_DESHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219540335|gb|ACL22074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 92/277 (33%), Gaps = 16/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D + +  G   N+  DH+D H T + Y  AK R+FE+  P +   + +
Sbjct: 162 ELSSFQLEL--VDSLCMNVGILLNVTPDHLDRHGTLENYLAAKARIFEKQRPSDCAILNW 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                   V + A +   RV+             V            +          L 
Sbjct: 220 ----DDARVRELAPHLKARVVFFSPTSLLAEGYGVQGDEIVLARDGKITPIIKRRELQLR 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + +      +G+    + + L +   V  R E VGT      I        +
Sbjct: 276 GNHNLENIMASIAAVRELGLSWEEIAQGLREFKGVEHRQEVVGTYEGILFINDSKGTNPD 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + E  L           IV+   G ++       M  +   +  + +V       E   K
Sbjct: 336 AAEKALYAFEE-----PIVLIAGGKNKGLDFHDFMKTVKEQVKSLVLVGSAAAEMEQAAK 390

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  GI  ++      EA+  AI      +V+++
Sbjct: 391 -----DTGIRHYLRAETFAEAVELAIAEAEPGNVVLL 422


>gi|282857257|ref|ZP_06266497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
 gi|282584907|gb|EFB90235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
          Length = 436

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 121/352 (34%), Gaps = 50/352 (14%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+AVTGT+GK++  + +  + + +GL++   G                         L+
Sbjct: 104 KIIAVTGTNGKTTCTALIAHLLRNAGLNAVSAGNIGNP--------------------LA 143

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             + +    + +E SS  L  +    ++      TNL  DH+D+H + + Y N       
Sbjct: 144 AHADRSYDAIVMELSSFQLHWN--TQLRPDVAVLTNLAPDHLDWHGSYENYKN-DKCKIF 200

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +E  A+ +  DA+     +     G      G     +  + V  + + ++  +  
Sbjct: 201 LPRQEECYAVTHDVDAFRVPAGRAVCALG-----RGNLRIDMDGRDVFLVGHGRRRLLFH 255

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +               +  A VA                 L     +  R E VG  +  
Sbjct: 256 KSSLKLLGSHNLENAAMSCAAVALAFRDVDPSA------GLAGFEALHHRCEPVGEQNGV 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIA 413
             I         ++   L +I    +GR +++ G  G  +      + ++  +   A I 
Sbjct: 310 LFIDDSKGTNVAAVIAALHSI----NGRKLIILGGQGKGESY--DELARVVCEETFAAIV 363

Query: 414 IVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I         + EKI A +   G    +   +  EA++ A E+    D +++
Sbjct: 364 I-------GSEAEKILAALRVAGYGHAVRAKDMAEAVKKASELAAPGDKVLL 408


>gi|160947656|ref|ZP_02094823.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
 gi|158446790|gb|EDP23785.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
          Length = 466

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 133/431 (30%), Gaps = 53/431 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFS------ATIRSNTPILVVDN------TR-KFLSLFASRLYG 111
             GA+  +     ++++        A +  N  ++   +      TR +FL         
Sbjct: 54  KNGAKIFIGQKKENIENPDLIVYTDAILPDNEELIKAKSIGVPCVTRGQFLGALMRNYT- 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               + +A++G+ GKS+  S + +                        N L       + 
Sbjct: 113 ----HSIAISGSHGKSTTTSMISK--ILINSPFDPSILIGGNLDEIDGNVLCGNEDYLVT 166

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A  + ++    + S+                       N+  DH+D+++      +   
Sbjct: 167 EACEFKANILHYYPSMAI-------------------ILNIDEDHLDFYKNLDHIVDT-F 206

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQ 290
             + + L + S AII  DD     +++                 +         + +   
Sbjct: 207 IGYMKNLDENSKAIINIDDPNCLPLLEHIKGETITFGINNENATYNITNISFDKVGHPCF 266

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              + +     F   + G   +YNA  A       GID   +   + K   +  R E  G
Sbjct: 267 DIENEKFGKHHFCLNIIGRHNIYNAAAAIIATYETGIDVEYIKNAISKYKNLHRRMEVYG 326

Query: 351 TNSRGGRIYV--DYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIAL 407
               G +  +  DY H    ++  L +I     GR++ +F      R +       K   
Sbjct: 327 VIGNGKKATILTDYGHHPREIKSCLSSIAEHKEGRLVCIFQPHTYSRTKALLNDFAK-CF 385

Query: 408 DLADIAIVTDDNPRSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           D  D  IVT+     E  +       +  ++       I      EA     E    +D 
Sbjct: 386 DDCDEVIVTEIYAAREKFDPTIHSIDLVEKLNKNGVNAIYLKTFEEARDYIFETFKDKDT 445

Query: 462 LVVAGKG--HE 470
           ++  G G  HE
Sbjct: 446 IITTGCGNPHE 456


>gi|237796618|ref|YP_002864170.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Clostridium botulinum Ba4 str. 657]
 gi|229261845|gb|ACQ52878.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Clostridium botulinum Ba4 str. 657]
          Length = 429

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 115/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +    + SG                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISTALKESGYKVGMYTSPYIEEFEERIQINGHNITKEDLGYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    +        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEEITYEKAGIIKKAPVIMYPQKKEVKKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CELIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKVGIKIEKIHIISALKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E+P+++   ++     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVAPHNDRGENPKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A       D++++ G
Sbjct: 389 CEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|15643006|ref|NP_228048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           maritima MSB8]
 gi|30316146|sp|Q9WY76|MURD_THEMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4980732|gb|AAD35325.1|AE001707_12 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           maritima MSB8]
          Length = 430

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 113/363 (31%), Gaps = 57/363 (15%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
                L    P+ ++ +TGT GKS+  + +  +    G  +F  G   T +         
Sbjct: 91  ELQFFLDNVDPKKVVGITGTDGKSTATALMYHVLSGRGFKTFLGGNFGTPAV-------- 142

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               +               +  +E SS  L       +        N+  DH+D+H + 
Sbjct: 143 --EALE----------GEYDYYVLEMSSFQLFWSERPYLSNF--LVLNISEDHLDWHSSF 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y ++K++        +           +K + +  +  G R   + +        +  
Sbjct: 189 KEYVDSKLKPAFLQTEGDLFVY-------NKHIERLRNLEGVRSRKIPFWTDENFATEKE 241

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I   ++ T+                    N L  + L + +  +    LE L     +P
Sbjct: 242 LIVRGKKYTLPGNY----------PYQMRENILAVSVLYMEMFNELESFLELLRDFKPLP 291

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E++G            A +++++   L N          VV    G   +    +  
Sbjct: 292 HRMEYLGQIDGRHFYNDSKATSTHAVLGALSNFDK-------VVLIMCGIGKKENYSLFV 344

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDV 461
           + A       I            +I  E+   +         N  EA   A+E+  K DV
Sbjct: 345 EKASPKLKHLI---------MFGEISKELAPFVGKIPHSIVENMEEAFEKAMEVSEKGDV 395

Query: 462 LVV 464
           +++
Sbjct: 396 ILL 398


>gi|228970145|ref|NP_273471.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           MC58]
 gi|325199611|gb|ADY95066.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 468

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 112

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 113 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 171 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 211 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 269 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 328

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 329 GGTALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 387

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 388 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 447

Query: 464 VAGKG 468
             G G
Sbjct: 448 NMGAG 452


>gi|170758367|ref|YP_001788481.1| FolC bifunctional protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405356|gb|ACA53767.1| FolC bifunctional protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 429

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/388 (13%), Positives = 115/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +  + + +G                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISAVLKEAGYKVGMYTSPYIEEFEERIQINGNNIAKEDLSYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    +        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEEITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CELIKVEDNLINIEIEIIEKNMGQQSFKLKTKKDTYNIYLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKLGIKIEKMHIISAIKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E+ +++   ++     
Sbjct: 332 RYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVAPHNDRGENSKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A       D++++ G
Sbjct: 389 CEHLEDYKECYDKAKSYCEDGDMILICG 416


>gi|109892713|sp|Q2Y639|MURC_NITMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 493

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 134/426 (31%), Gaps = 59/426 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
           A+A+V S+A    +        + + VV   R   L+       G      +A+ GT GK
Sbjct: 65  ADAVVTSTAILPDNPEVLAARESKVPVVP--RAIMLAELLRLRQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  +   +G+    +     + +     +L     I +    S  S        
Sbjct: 117 TTTTSLITSVLAEAGMDPTFV-IGGRLEAAGSHAKLGRGEFIVVEADESDASFLH----- 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+D ++            F + LP    A++
Sbjct: 171 ---------------LQPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFVQHLPFYGMAVL 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLF 304
             DDA+  E+M                       +           I  + + +    + 
Sbjct: 216 CVDDAHVLEIMPAITKPVTTYGLSETAQVRAADIRHSEGQMHFTALIGVNGKTRKLKIVL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---------NSRG 355
            LPG   V NAL A  +C  +G+    ++  L     V  RF+  G           +  
Sbjct: 276 NLPGLHNVQNALAAIAVCNEVGLPDVSIVRALADFKGVDRRFQRYGEIPLTDPETGRNGS 335

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIA 413
             +  DY H    +   +   R    GR  +V      R    R +       L  AD+ 
Sbjct: 336 FTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDLFEDFVKVLSTADVL 394

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPG-----------FIEKGNRIEAIRTAIEMLNKQDVL 462
           ++T+     E P  I A+                          EAI     +   +DV+
Sbjct: 395 LLTEVYSAGEAPI-IAADSKSLARSLRVLGKVEPIFVERVDELEEAIH---SIARDKDVV 450

Query: 463 VVAGKG 468
           +V G G
Sbjct: 451 LVMGAG 456


>gi|300702963|ref|YP_003744565.1| UDP-N-acetylmuramate--l-alanine ligase [Ralstonia solanacearum
           CFBP2957]
 gi|299070626|emb|CBJ41921.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CFBP2957]
          Length = 483

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 132/430 (30%), Gaps = 68/430 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F   LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-----TNSRGG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALDLA 410
            +  DY H    +   +   R    GR +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFIKVLGTV----- 388

Query: 411 DIAIVTDDNPRSEDPEKIRAE----------IIHGIPGFIE--KGNRIEAIRTAIEMLNK 458
           D  ++ +     E P  I A           +   I         +  +AI  A      
Sbjct: 389 DGLLLAEVYSAGEPP--IVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDA---AQD 443

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 444 NDVVITMGAG 453


>gi|170728854|ref|YP_001762880.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           woodyi ATCC 51908]
 gi|169814201|gb|ACA88785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella woodyi
           ATCC 51908]
          Length = 442

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 135/396 (34%), Gaps = 54/396 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   ++         +  I V+ +      LFA  +  + P  ++ +TG++GKS
Sbjct: 67  ASQIIISPGIAVDTPEIRAAIDMGIEVIGDVE----LFARAVKDREP-CVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +GL+    G                   + L +    L         +
Sbjct: 122 TVTTLVGEMARVAGLNYAVGGNIGVP-------------ALDLLREPRDL-------YIL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I  +  N+  DH+D +   +AY  AK+ L+     +   A+  
Sbjct: 162 ELSSFQLET--THSLNCIVATCLNISEDHMDRYTDLEAYRQAKLSLY----CQSKRALFN 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  ++              S G    F     V         T  +   D   +    
Sbjct: 216 REDELTEP------KDPMNQNSFGLSAPFNDEWGVRDGKVVHGTTEIMNLLDVALVGSH- 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 N L A  L    G+D   +++       +  R E V  ++    +    A    
Sbjct: 269 ---NHANLLAAMALAYHAGVDKESMIQVATTFTGLAHRCELVAVHNGVSYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+       G  I++   G  +    +P+  +    L+ +  +  D         
Sbjct: 326 ATVAALEGFSDHLGG--IILIAGGDGKGADFQPLQ-QAIHGLSQLITLGKDG-------- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              +I       I   +  EA++TA E+    D+++
Sbjct: 375 --DKIAEFSEKAIRVSDMSEAVKTANELAEAGDIVL 408


>gi|297250431|ref|ZP_06934038.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
 gi|296838889|gb|EFH22827.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
          Length = 469

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                 I+   +  +  + + T+ V+ K  +
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QESFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLAAARGAYPDKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +  +  + +L   DV++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|126658806|ref|ZP_01729950.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. CCY0110]
 gi|126619904|gb|EAZ90629.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. CCY0110]
          Length = 522

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/426 (17%), Positives = 133/426 (31%), Gaps = 54/426 (12%)

Query: 71  IVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +  ++A      PI    +    L               +AV GT GK++
Sbjct: 114 VICSTAIAHSNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTT 164

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++G+                   +               +  G      +
Sbjct: 165 TSSLIGYMLLKAGVD---------------PTIIVGGEVDAWEGNARIGAKGGYLVAEAD 209

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++QT             +            
Sbjct: 210 ESDGSLTKH-----YPNIGIVTNIELDHPDHYQTLDDVVKTFQIFETQCDLLIGCL---- 260

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
                 E +               +G    +K + + H      +  +G+   +    +P
Sbjct: 261 ----DCETVATQLTPSITYSLDSTKGADYTVKNIVSNHKGTTAEVWEKGRYLGEMRLTIP 316

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  +   +G+D  ++ + L        RFE  G    G     DYAH  +
Sbjct: 317 GSHNVSNALAAIAVGRKLGLDFGVIADALFTFAGAKRRFEHRGH-CNGITFIDDYAHHPS 375

Query: 368 SLEMILKNIRTITSGRII--VVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSE 423
            +E  L   R    G  I  VV      R       + + A     AD+ I+TD     E
Sbjct: 376 EIEATLSAARCKVDGENISRVVAIFQPHRYSRTATFLKEFAACFKDADLVILTDIYSAGE 435

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVT 476
                   + +   I H     I + +    +   + + L   D+++  G G+    I+ 
Sbjct: 436 VNLHNISGQDLAEAIKHNHSHVIYEPSLKH-LHQVLPDFLQSGDLVMFLGAGNLN-QIIP 493

Query: 477 NGEKKM 482
               + 
Sbjct: 494 QVITQY 499


>gi|29337227|sp|P94335|MURC_CORGL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 486

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 146/425 (34%), Gaps = 60/425 (14%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R+     P++   +    L               + + GT GK
Sbjct: 80  VVVTSFAAIPQDNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G+          ++    +    T          S  S        
Sbjct: 131 TSTTSMSVVAMQAAGMD-PSFAIGGQLNKAGTNAHHGTGEVFIAEADESDASLLRYK--- 186

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+D+ +T +AYF      F   +      ++
Sbjct: 187 -----------------PNVAVVTNVEPDHLDFFKTPEAYFQV-FDDFAGRITPNGKLVV 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---------QQVTISVEG 297
             +D ++ E+ +R+   G + +  G         +V A+             + TI+++G
Sbjct: 229 CLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +  +PG+  V N   A      +G D   ++E L     V  RFEF G    G  
Sbjct: 289 QEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKF 348

Query: 358 I----YVDYAHTSNSLEMILKNIRTITS----GRIIVVFG-CGGDRDQGKRPIMGKIALD 408
                Y DYAH    +  +L   RT       GR+IV F      R    +    + AL 
Sbjct: 349 NGAAIYDDYAHHPTEVTAVLSAARTRVKAAGKGRVIVAFQPHLYSRTIEFQKEFAE-ALS 407

Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD A+V +     E P      +I  + +  IP  + + N         E+    D+++
Sbjct: 408 LADAAVVLEIYGAREQPVDGVSSEIITDAMT-IP-VVYEPNFSAVPERIAEIAGPNDIVL 465

Query: 464 VAGKG 468
             G G
Sbjct: 466 TMGAG 470


>gi|32474077|ref|NP_867071.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopirellula baltica SH 1]
 gi|32444614|emb|CAD74616.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Rhodopirellula baltica SH 1]
          Length = 690

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/488 (13%), Positives = 128/488 (26%), Gaps = 70/488 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF----------IPQAIAQGAEAIVV 73
              + +   ++  +   Q G + V           +          I QA+A+GA  I+ 
Sbjct: 154 SGSDIEFTSIAQSAETCQPGQLVV-----------YRLGDDCPVELISQALARGAAGILT 202

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                            P  +V +T + L+   S    +  + ++ +          +  
Sbjct: 203 EQILPAP---------IPQAIVADTDRALAEIRSNQTDRPDQKLITIGIVGSAGKTITSF 253

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEAS 190
                   +       T   SS +      T        L  ALS     G      E  
Sbjct: 254 LTASVLRDIPCRVAYQTDLGSSDSVVTEAGTAKVTNGASLIDALSDAVDAGAAVSITEMD 313

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L     D I+L     T L     D+  +                            
Sbjct: 314 SAQLRLGAYDQIELDIVVVTGLDMGGNDFGPSPIECAFELAGQGG-----VLIVPESDQR 368

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A S             V      G  + ++ +          +  E +       L    
Sbjct: 369 AVSAAHTAAQSQNIEVVTYGVDNGADVSIRTISLEDGTLTAMLRHESRAAVMESFLGRGH 428

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-----FVGTNSRGGRIYVDYAHT 365
                  AA + +        + E L KL  +PGRFE        T+     + +D   +
Sbjct: 429 FAECLAAAAAVGVVTENPLPQIAESLCKLRELPGRFEAITSGDWETDQNNPVVRLDIGGS 488

Query: 366 SNSLEMILKNIRT------------------------ITSGRIIVVFGCGGDRDQGKRPI 401
              ++  L+  R                             ++  V     + D      
Sbjct: 489 PERVKFALQAARKELLQTPASTAPMTLPMHGSSSVNNTKRPKLWCVLSVSENDDAETLMQ 548

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNK 458
            G++   + D  ++T  +    +   +   ++ GI          +   AI+ A    + 
Sbjct: 549 YGRLLESMPDHCVLTCADKDKANFLSMSHGVLDGIQDVAAMRLVADSSRAIQWAHAEASN 608

Query: 459 QDVLVVAG 466
            D+++V G
Sbjct: 609 NDMILVVG 616


>gi|25008816|sp|Q9K0Y1|MURC_NEIMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|7225646|gb|AAF40861.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis MC58]
 gi|325140938|gb|EGC63445.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           CU385]
 gi|325205492|gb|ADZ00945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M04-240196]
          Length = 469

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 269

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
                   DY H    +   L   R     +  +V      R    R +       L+  
Sbjct: 330 GGTALLVDDYGHHPVEMAATLAAARGAYLEKR-LVLAFQPHRYTRTRDLFEDFTKVLNTV 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|27381712|ref|NP_773241.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium japonicum
           USDA 110]
 gi|44888203|sp|Q89FU8|MURC_BRAJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27354881|dbj|BAC51866.1| UDP-N-acetylmuramate-alanine ligase [Bradyrhizobium japonicum USDA
           110]
          Length = 467

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 149/441 (33%), Gaps = 61/441 (13%)

Query: 50  VGNKED-GHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSL 104
            G K   GH           GAE +VVS+A    +          I VV   R+   L+ 
Sbjct: 51  KGAKVSVGHK-----AENVDGAEVVVVSTAIKRDNPELMAARERRIPVV---RRAEMLAE 102

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                     ++ +A+ GT GK++  + V  +    GL    I     I+++  + RL  
Sbjct: 103 LMRL------KSCVAIAGTHGKTTTTTMVATLLDAGGLDPTVI-NGGIINAYGSNARLGA 155

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              + +    S                          +       TN+  +H+D+ +T +
Sbjct: 156 GDWMVVEADESD--------------------GTFLKLPTDVAIVTNVDPEHLDHFKTFE 195

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A  +A  R F E LP    A++  D    + ++ +  +          Q     L  +  
Sbjct: 196 AVQDA-FRHFVENLPFYGFAVMCIDHPVVQSLVGKIEDRRIITYGENPQADV-RLVDLTP 253

Query: 285 IHNKQQVTISVE-------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           +    +  ++          +  D + P+PG     NA  A  +   +G+    +   + 
Sbjct: 254 MGGGSKFKVAFRDRKTGAVHEIPDLMLPMPGRHNASNATAAIAVARELGVSDEAIRSAIA 313

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  RF   G    G  +  DY H    +  +LK  R  T+G+I+ V      R   
Sbjct: 314 GFGGVKRRFTKTG-EWNGVTVIDDYGHHPVEIAAVLKAARESTNGKIVAVV--QPHRYTR 370

Query: 398 KRPIMGKIALDL--ADIAIVTDDNPRSEDPEK-I-RAEIIHGIP--GFIEKGNRIEAIRT 451
            + +  +       AD  IV D     E P   I R   + G+   G  E      A   
Sbjct: 371 LQSLFEEFCTCFNDADAVIVADVYAAGEAPIDGIDRDHFVAGLRAHGHREVVPLPAAPEL 430

Query: 452 A---IEMLNKQDVLVVAGKGH 469
           A     +    D++V  G G+
Sbjct: 431 AGIVKGLAKSGDLVVCLGAGN 451


>gi|120609511|ref|YP_969189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587975|gb|ABM31415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
          Length = 501

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 120/384 (31%), Gaps = 28/384 (7%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +QAG +FVA+ G + D + F+        +A    +A +L        +  P 
Sbjct: 36  VHTDTRTLQAGDLFVALRGERFDANDFLA-------QARAGGAAAALAHPGRLDAAGLPG 88

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T   L   A+    +    ++ VTG++GK++V   +  + +     +      + 
Sbjct: 89  IEVPDTLAALGALAAGWRARLDLPLVGVTGSNGKTTVTQMIASVLRAWKGDAAFATQGNF 148

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +       L     + L  A      +   +   E +           +        N 
Sbjct: 149 NNDIGVPLML-----LRLRDAHEAAVIELGMNHPGEIAVLAGIARPTVAL------VNNA 197

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H+++  T QA       +   L P        AD                       
Sbjct: 198 QREHLEFMHTVQAVAEENGSVISALPPDGVAVFPAADTYAPLWRGLAGTRRCLTFCDRAG 257

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
               +             V I      FD    + G   V NAL A    +A G     +
Sbjct: 258 VAADVRCTDARWETGAWNVQIDTPQGAFDGTLRIAGRHNVANALAATACALAAGAPLDAI 317

Query: 333 LEHLEKLHVVPGRF--------EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
              L     V GR         +  G   R   +   Y    +S+   +  +  +   ++
Sbjct: 318 ARGLAAFEPVKGRSRAFVATVAQPGGAPRRITAVDDTYNANPDSMRAAIDVLAELPGPQL 377

Query: 385 IVV--FGCGGDRDQGKRPIMGKIA 406
           +V+   G  GD+        G  A
Sbjct: 378 LVMGDMGEVGDQGPQFHAEAGGHA 401


>gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
 gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
          Length = 790

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 20/140 (14%)

Query: 1   MK--LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW--IFVAIVGNKEDG 56
           MK  L ++      ELI +         +  +  V +DSR+   G   +FVA+ G   D 
Sbjct: 1   MKYMLSEIARICGGELIGE---------DLPVARVLTDSRNCSFGEEPLFVAMKGTNHDS 51

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           H FI + + +  +A +             + +    +VV +    L   A+    +    
Sbjct: 52  HAFIGEMVRRDVKAFLAERK-------TQLPAGCGCVVVPSAIAALQQLAAHHRTRFKGR 104

Query: 117 ILAVTGTSGKSSVASFVQQI 136
           ++ +TG++GK+ V  ++ Q 
Sbjct: 105 VVGITGSNGKTVVKEWIAQQ 124


>gi|326775888|ref|ZP_08235153.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656221|gb|EGE41067.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 466

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 139/411 (33%), Gaps = 41/411 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +          + VV  +   L+   + L        +AV GT GK+
Sbjct: 70  ASCVVVSSAIRADNPELLRAGELAVPVVHRS-DALASLMNGL------RAIAVAGTHGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +       GL +        +     +               S  S Q       
Sbjct: 123 TTTSMLAVALSSLGL-APSYAIGGDLEGPGTNATHGEGDIFVAEADESDRSFQKYD---- 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH   + +    +++      +++P  +  +  
Sbjct: 178 ----------------PEVAIVLNVELDHHANYASMDEIYDSFETFVGKVVPGGTLVVSA 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                 +   +    +  +V++ G  +   + + KV       +VT+ + GK   F   +
Sbjct: 222 DQPGAVELTRRVRDLSDLKVVTYGCAEDADVRVHKVTPRGLTSEVTVLLNGKFLTFTVSV 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG    +NA+ A    +A+GI +  +   L     V  R +  G  + G ++   YAH  
Sbjct: 282 PGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVKRRLQLKG-EAAGVQVIDSYAHHP 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   L+ +R   +   I+V        R Q     MG+ AL LAD ++V D  P  ED
Sbjct: 341 TEMTADLEAMRGAAADARILVVFQPHLFSRTQELGTEMGQ-ALALADASVVLDIYPARED 399

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           P        I               ++ + +  A+  M    D+++  G G
Sbjct: 400 PIPGITSALIIDAAKEAGAEVTAVHDQAD-VPAAVAGMAKSGDLVLTMGAG 449


>gi|239999606|ref|ZP_04719530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae 35/02]
 gi|240113346|ref|ZP_04727836.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae MS11]
 gi|240116307|ref|ZP_04730369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID18]
 gi|260439876|ref|ZP_05793692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI2]
 gi|268595417|ref|ZP_06129584.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268599420|ref|ZP_06133587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268601974|ref|ZP_06136141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291043152|ref|ZP_06568875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|268548806|gb|EEZ44224.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268583551|gb|EEZ48227.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268586105|gb|EEZ50781.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291012758|gb|EFE04741.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|317164858|gb|ADV08399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 445

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 145/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVMNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F     +   A     D      MKRA     R         +      
Sbjct: 200 LLDYAHTKAKIFRGDGVQVLNA-----DDVFCRAMKRAGREVKRFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   +    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERGTGCLKQGNEDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
 gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
          Length = 445

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 143/418 (34%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKDKIFRGDGVQVLNA-----DDVFCHAMKRAGREVKWFSLEHKADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEVGDIVLL 418


>gi|194099349|ref|YP_002002449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae NCCP11945]
 gi|226722939|sp|B4RQC7|MURD_NEIG2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193934639|gb|ACF30463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae NCCP11945]
          Length = 445

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 145/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVMNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F     +   A     D      MKRA     R         +      
Sbjct: 200 LLDYAHTKAKIFRGDGVQVLNA-----DDVFCRAMKRAGREVKRFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   +    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERGTGCLKQGNEDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|54298603|ref|YP_124972.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148358651|ref|YP_001249858.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|296108259|ref|YP_003619960.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|59798137|sp|Q5X1S6|MURC_LEGPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224700|sp|A5IAW2|MURC_LEGPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53752388|emb|CAH13820.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148280424|gb|ABQ54512.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|295650161|gb|ADG26008.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|307611493|emb|CBX01164.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           130b]
          Length = 469

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 134/418 (32%), Gaps = 49/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
           +GA+ +V SSA    +           P++     R   L+      +G      +A+ G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVI----PRAAMLAELMRFRHG------IAIAG 122

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S V  +    GL            SF    +L +         L   +   V
Sbjct: 123 THGKTTTTSLVSSLLAEGGLD----------PSFVIGGKLNSCGA---NAQLGKSAYFVV 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                +AS   L          +    TN+  DH+D ++            F   LP   
Sbjct: 170 EADESDASFLFLK--------PMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  +D     ++                           + ++  V      K    
Sbjct: 222 LAVVCLEDEEICRILPAIQRPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTI 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
            F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G          I 
Sbjct: 282 QFQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIV 341

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
            DY H    +   +   R +    R++ VF      R Q        +   L+D  ++ D
Sbjct: 342 DDYGHHPQEILSTIDAFRRVWPERRLVHVFQPHRYTRTQSLHRQFVDVLS-LSDELLLMD 400

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
                E        E +  EI              ++++  ++  +   DV+++ G G
Sbjct: 401 IYAAGETAIPGVTSENLANEIRSRDKRVTIVS--EQSLKATLDEFIKDGDVILMQGAG 456


>gi|52842820|ref|YP_096619.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|59798151|sp|Q5ZSA5|MURC_LEGPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52629931|gb|AAU28672.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 469

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 134/418 (32%), Gaps = 49/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
           +GA+ +V SSA    +           P++     R   L+      +G      +A+ G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVI----PRAAMLAELMRFRHG------IAIAG 122

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S V  +    GL            SF    +L +         L   +   V
Sbjct: 123 THGKTTTTSLVSSLLAEGGLD----------PSFVIGGKLNSCGA---NAQLGKSAYFVV 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                +AS   L          +    TN+  DH+D ++            F   LP   
Sbjct: 170 EADESDASFLFLK--------PMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  +D     ++                           + ++  V      K    
Sbjct: 222 LAVVCLEDEEICRILPAIQRPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTI 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
            F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G          I 
Sbjct: 282 QFQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIV 341

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
            DY H    +   +   R +    R++ VF      R Q        +   L+D  ++ D
Sbjct: 342 DDYGHHPQEILSTIDAFRRVWPERRLVHVFQPHRYTRTQSLHRQFVDVLS-LSDELLLMD 400

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
                E        E +  EI              ++++  ++  +   DV+++ G G
Sbjct: 401 IYAAGETAIPGVTSENLANEIRSRDKRVTIVS--EQSLKATLDEFIKDGDVILMQGAG 456


>gi|146329426|ref|YP_001209869.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
 gi|189029172|sp|A5EY22|MURC_DICNV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146232896|gb|ABQ13874.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
          Length = 478

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 144/442 (32%), Gaps = 56/442 (12%)

Query: 46  FVAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKF 101
           ++A  G +     FI  A      A+ +VVSSA +  +           P++     R+ 
Sbjct: 58  YLAQKGAQI----FIGHAAENVEHADVVVVSSAIAENNVEVKQARALEIPVI-----RRA 108

Query: 102 --LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             L+      +G      +A+ GT GK++  S    +   +GL                D
Sbjct: 109 QMLAELMRFRFG------IAIAGTHGKTTTTSLTASLLSDAGL----------------D 146

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                   +  A + + L          + S           ++ +    TN+  DH++ 
Sbjct: 147 PTFVIGGILTAAGSNARLGEGHYLVAESDESDCSF-----WLLQPMISIVTNIDADHLEN 201

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           +        A    F   LP    A++  DDA  + ++                      
Sbjct: 202 YNGSYETLKAGFVRFLHNLPFYGLAVLCIDDAGVRSILPEVGRPVRTYGFSEDADVRAIN 261

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +   +     V    E + F     + G+  V NAL A  +   +GID   ++E L + 
Sbjct: 262 VRQKGLAMHFDVIAHDEDRCFSVTLNMAGKHNVLNALAAIIVGEELGIDRETIIEGLAQF 321

Query: 340 HVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DR 394
             V  RF   G  +          DY H    ++ +L       +GR IV         R
Sbjct: 322 KGVARRFTHHGRIAHDHGFADVFEDYGHHPREIKAVLDAAMEGFAGRRIVAVFQPHRFTR 381

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIE 447
            +       ++   + D  ++T+     E+P        +   I   G    I   ++ E
Sbjct: 382 TRDLLDDFAEVLA-VCDCLVLTEVYAAGEEPIAGADARDLTRAIRAHGRVEPIFIADKEE 440

Query: 448 AIRTA-IEMLNKQDVLVVAGKG 468
            +     ++L   DV++  G G
Sbjct: 441 IVPHLRHDILQDDDVVIFFGAG 462


>gi|59801871|ref|YP_208583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|293398488|ref|ZP_06642666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
 gi|62900451|sp|Q5F6L6|MURD_NEIG1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|59718766|gb|AAW90171.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610959|gb|EFF40056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
          Length = 445

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 144/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVMNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K  +F     +   A     D      MKRA     R         +      
Sbjct: 200 LLDYAHTKAEIFRGDGVQVLNA-----DDVFCRAMKRAGREVKRFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   +    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERGTGCLKQGNEDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|295688570|ref|YP_003592263.1| UDP-N-acetylmuramate/alanine ligase [Caulobacter segnis ATCC 21756]
 gi|295430473|gb|ADG09645.1| UDP-N-acetylmuramate/alanine ligase [Caulobacter segnis ATCC 21756]
          Length = 472

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 81/431 (18%), Positives = 147/431 (34%), Gaps = 57/431 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH     A  +GA AIV S+A    +       +  + +V   R+   L+      +   
Sbjct: 63  GHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLV---RRAEMLAELMRLQFS-- 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S V  +    G+    +     I+++  + ++     I +   
Sbjct: 115 ----IAVGGTHGKTTTTSMVATLLDAGGMDPTVV-NGGIINAYGTNAKVGEGDWIVVEAD 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +K      TN+  +H+D+    +A        
Sbjct: 170 ESDGSFLR--------------------LKSTVAIVTNIDAEHLDHWGDFEAVKKGFQDF 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + +      A+            +  +       +       +   ++     K  + +
Sbjct: 210 IQNIPFYGFAAVCTDHPEVQALTSRIENRRLVTYGTNPQAEVRVSNIEMGPDGAKFDIVV 269

Query: 294 SVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           S    +         P+ G   V NA  A  +   +G+D+  + + L     V  RF   
Sbjct: 270 SPRDGEVVRYDGLKMPMAGHHNVLNATAAVAVARELGVDAESIAKGLAGFGGVKRRFTTT 329

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  + G R+  DY H    +  +LK  R +T G++I V      R    R +M + +   
Sbjct: 330 GVAN-GIRVVDDYGHHPVEIAAVLKAARAVTQGKVIAVV--QPHRYTRLRDLMTEFSSCF 386

Query: 410 --ADIAIVTDDNPRSEDPEKI--RAEIIHGIPGFIEKGNRIE-------AIRTAI-EMLN 457
             AD  IV D     E P +   R  ++ G+  F   G+R         A+   I     
Sbjct: 387 NDADTVIVADVYTAGEQPIEGVNRDALVEGLKKF---GHRRALPLESPTALPRLIAAEAT 443

Query: 458 KQDVLVVAGKG 468
             D++V+ G G
Sbjct: 444 SGDLVVLLGAG 454


>gi|240128807|ref|ZP_04741468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268687189|ref|ZP_06154051.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268627473|gb|EEZ59873.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 445

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 144/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVMNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K  +F     +   A     D      MKRA     R         +      
Sbjct: 200 LLDYAHTKAEIFRGDGVQVLNA-----DDVFCRAMKRAGREVKRFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   +    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERGTGCLKQGNEDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|189029216|sp|Q24ZG1|MURC_DESHY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 449

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 135/408 (33%), Gaps = 44/408 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVV+SA   ++     R+    + V +  +FL    S+      +  +AV GT GK++  
Sbjct: 65  IVVASAAYGENHEEIARARELNIPVYSYPQFLGRLMSK------KRGIAVAGTHGKTTTT 118

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           + +     +SG   +  +G           +           +   +  +    +     
Sbjct: 119 AMIGLALLQSGIDPTIVVGSDVPSIGGNAYSGQGDFFLAESCEYRRHFLNYSPEY----- 173

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  DH DY +       A      + +P      I+ +
Sbjct: 174 -----------------LIITNIEFDHPDYFKDLDDVVCA-FSEIAQKIPPHGRIFIWHE 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPG 308
           D   K +  +       +     +   ++   +        +TI +      +F   + G
Sbjct: 216 DPQRKAIQAQ----SPIITFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSG 271

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL +  LC+ IG+ +  VLE L   +    RFE +G N+ G  I  DYAH    
Sbjct: 272 KHNILNALASIALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNA-GALIVDDYAHHPTE 330

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NP 420
           +   L+  R +    RI  VF         K       +   AD  ++ +        N 
Sbjct: 331 IRSTLEGARLSFPDRRIRAVFQPHTFSRTEKLLQEFSQSFQAADEVVIAEIFASARETNL 390

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     +   I           +  E      + L+  D+++  G G
Sbjct: 391 NTISASSLADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVLTLGAG 438


>gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M13399]
 gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240013]
          Length = 445

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 141/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F           +   D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDG-----VQVLNSDDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC AIG+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   + 
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALV 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|307152668|ref|YP_003888052.1| cyanophycin synthetase [Cyanothece sp. PCC 7822]
 gi|306982896|gb|ADN14777.1| cyanophycin synthetase [Cyanothece sp. PCC 7822]
          Length = 879

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH     E +   +R     R+ VV G G  RD+    
Sbjct: 727 QTPGRMNL--FNLGSYHALVDYAHNPAGYEAVGGFVRNWQGERLGVVGGPGDRRDEDL-I 783

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAI 453
           ++G++A  + D  IV +D+      R E  + I   II   P   +    N + AI   +
Sbjct: 784 LLGQLAAQMFDRIIVKEDDDTRGRERGEVADLIVKGIIQENPNLRYDVILNEVTAIEEGL 843

Query: 454 EMLNKQDVLVV 464
             + +  ++V+
Sbjct: 844 NQVQRNGLVVI 854


>gi|118618799|ref|YP_907131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
 gi|118570909|gb|ABL05660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
          Length = 525

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 86/526 (16%), Positives = 157/526 (29%), Gaps = 99/526 (18%)

Query: 5   DLIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNK-------- 53
           D    +  E++    + I P +  +R++   V  DSR +  G +F+A+ G +        
Sbjct: 3   DYTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAA 62

Query: 54  ---------------EDGHLFIPQAIAQGAEAIVVSSAYS---------LQDFSATIRSN 89
                                       G  AIVVS             L+  +    + 
Sbjct: 63  AAVAAGAVAVLAARPV------------GVSAIVVSPEPDSTADALTGVLEHDADGSGAA 110

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
               +    +   +   +         I+ +TG+SGK+S    V  + +  G      G 
Sbjct: 111 VLAALAKLAKAVAAELMAG-----GLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGS 165

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +            T S  YL   +S      +  ++  A                 G  
Sbjct: 166 FNNELGHPWTVLRATRSTDYLILEMSARHPGNIAALARVAP-------------PAIGVV 212

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+G  H+    +++           + +P     I+ ADD     + +       RV  
Sbjct: 213 LNVGTAHLGEFGSREIIAQT-KSELPQAVPASGVVILNADDPAVAAMAEVTAARVVRVGR 271

Query: 270 VGYQGKFIHLKKVCAIHN-------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
               G                    + Q T+            + G+ QV NAL A  + 
Sbjct: 272 ATATGAGWAGPGDVWAGPVSLDRLARPQFTMHAGDAAAQVRLGVYGDHQVSNALCAGAVA 331

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           +  G   + V   L +   V      V T   G  +  D Y    +S+   L+ +  I  
Sbjct: 332 LECGASVSQVAAALAEAGPVSRHRMRVSTRPDGVTVIDDAYNANPDSMRAGLQALAWIAR 391

Query: 382 GR-IIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDPEKI---------- 428
           G          G R Q +R   ++G++A   AD    T+ +       ++          
Sbjct: 392 GEAESTAASQPGVRPQSRRSWAVLGEMAELGADAI--TEHDHIGRLAVRLDVSRLVVVGT 449

Query: 429 ---RAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               + I HG           +   +R  A+      +   DV+++
Sbjct: 450 GRSMSAIYHGAVMEGSWGTEAVSVPDRDAALALLRAEIQPGDVVLI 495


>gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
 gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
          Length = 456

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 16/288 (5%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S      +  E SS+ L+   +   + I     N+  DH+  H+T + Y  AK R+FE 
Sbjct: 152 YSMPADGFLVAELSSYQLET--IKHFRPIGAIMLNITPDHLARHKTMENYIAAKERIFEN 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L  +   +   DD    ++  RA +   ++          +                 +
Sbjct: 210 QLSTDYLVL-NIDDPVVADMEHRAPSHILKISQKKAVENGAYYAD---GKCYIAKDGVAK 265

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               D    +PG   + N L    L  A+G+    +   + + H V  R E V T     
Sbjct: 266 FVIADEDIHIPGSHNIENILTVIALSYALGVPVETIHRIISEFHGVEHRLERVKTIDGIT 325

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                 A   +S+   L++         +++   G D+       M  +      +  + 
Sbjct: 326 FYNDSKATNVDSVVKALESFDQ-----QVILLAGGHDKMTPLEDFMELVKEKTKAVIFMG 380

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   R E   K       G+       +  +A+    ++    D++++
Sbjct: 381 EAADRFETAAK-----KAGVKPIYRALSMKDAVEKGYKLAETGDIVLL 423


>gi|302872762|ref|YP_003841398.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575621|gb|ADL43412.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 455

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 141/407 (34%), Gaps = 42/407 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    + +    L +    +FL L          +N++A++GT GK++  S
Sbjct: 64  VIYTAAISKDNPELLAAKRMNLKIYERAEFLGLLMKDF-----KNVIAISGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +   +   + +   + +  + +   + +       S             
Sbjct: 119 MIGYILKKANYNPTVL-VGAFVKQLSGNFVIGSKEYLVVEACEYVDSFLKFN-------- 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +      +   DD 
Sbjct: 170 ------------PTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKISTSGFLVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K+++ + +     + +      F         + +  V    +         +PG   
Sbjct: 217 NVKDIISQLNTQIICISTKEKTDIFADNISCIDGYYEFDVKNKDDETLAHIKLNIPGFHN 276

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYNAL A  +   +G++S  +   + +      R E VG    G  +Y DYAH    ++ 
Sbjct: 277 VYNALAAFAVASKLGVESITIEHAISEFCGASRRLEKVG-EFDGIYLYDDYAHHPTEIKA 335

Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR--------- 421
            L  ++ ++ G++  +F      R +       +    LAD  IVTD             
Sbjct: 336 SLNTLKKLSQGKVFAIFQPHTFSRLKNLLNEFAESLS-LADKVIVTDVYAAREKNTFGIT 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           SE+      EI           +        I+   K D++   G G
Sbjct: 395 SENLYLKLKEIGVDCEYISSFEDIA---SYVIKEAKKGDIIATIGAG 438


>gi|17547562|ref|NP_520964.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           GMI1000]
 gi|25008811|sp|Q8XVI8|MURC_RALSO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17429866|emb|CAD16550.1| probable udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 483

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 132/430 (30%), Gaps = 68/430 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F   LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-----TNSRGG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALDLA 410
            +  DY H    +   L   R    GR +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFIKVLGTV----- 388

Query: 411 DIAIVTDDNPRSEDPEKIRAE----------IIHGIPGFIE--KGNRIEAIRTAIEMLNK 458
           D  ++ +     E P  I A           +   I         +  +AI  A      
Sbjct: 389 DALLLAEVYAAGEPP--IVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDA---AQD 443

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 444 NDVVITMGAG 453


>gi|316984933|gb|EFV63889.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 506

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 150

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 151 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 208

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 209 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 248

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 249 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 307 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 366

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 367 GGTALLVDDYGHHPVEMAATLAAARGAYLEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 425

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 426 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485

Query: 464 VAGKG 468
             G G
Sbjct: 486 NMGAG 490


>gi|320352820|ref|YP_004194159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121322|gb|ADW16868.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
          Length = 458

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 132/413 (31%), Gaps = 43/413 (10%)

Query: 59  FIPQA---IAQG--AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           F+ QA   +  G    A +  +   +      +               L   A    G++
Sbjct: 50  FLKQAEVALETGGHTAAFLAGADMVIPGPGVPLDLPVLQAARKQGLPVLGELALA-AGQY 108

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AVTG++GK++V S + ++ + SG + F  G   T       +             
Sbjct: 109 AVPVIAVTGSNGKTTVTSLIGELLRASGKNPFVGGNIGTPLLDYFADPQG---------- 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      V +E SS  LD       +   G   N+  DH+D H + +AY  AK  L
Sbjct: 159 --------YDAVVLELSSFQLDL--AGAFRPDIGLLLNISPDHLDRHGSLEAYTLAKQNL 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F         AI+ ADD  +       +    R      +G    +     +       +
Sbjct: 209 FRH-QQLGDRAILGADDPVAA--ATPLNPEVGRFTFGRAEGCTARIADGRILLTLMAGAL 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S + +       L       NA  A       G + A + E L +    P R   V T  
Sbjct: 266 SGKTEYVLSGTTLHSSVNQLNAAAAILAVTLAGCEQAGIAEGLRRFVPPPHRMAEVATID 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADI 412
               I    A    +LE  L    +        V    G RD+G    ++ ++       
Sbjct: 326 GVRFINDSKATNIGALEAALAGCESP-------VVLIAGGRDKGSDYSLLREVVGRKVKH 378

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++        +   +    +  +          +A+R A+      D++++A
Sbjct: 379 LVLVG------EAAGLMRAALGSLVPTEAATTMEDAVRRAMTAAASGDLVLLA 425


>gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 445

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 141/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADVVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKDKIFRGGGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLISTQDIPLQGLHNAANVMAAVALCEAAGLPREALLEHIKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++ A       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYTQAEAGDIVLL 418


>gi|210621753|ref|ZP_03292802.1| hypothetical protein CLOHIR_00747 [Clostridium hiranonis DSM 13275]
 gi|210154635|gb|EEA85641.1| hypothetical protein CLOHIR_00747 [Clostridium hiranonis DSM 13275]
          Length = 432

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 11/229 (4%)

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D     + K A       +   +    +    V +      +           
Sbjct: 195 VVVYSQGDEAEDVLKKIAAEENAEFIEADFSSINVKKDDVHSQIFDFSINGKEFKDMEIK 254

Query: 303 LFPLPGEFQVYNALVAAGLCIA---IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           L           AL A         +   +   ++        PGR E V          
Sbjct: 255 LIGEHQVRNCVTALNAIDYLRRSGKVANITDDSVKAGILETKWPGRVEKV---MENPTFI 311

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  +    + K +    + R +V+  G   D+D      + +I + + D  +VT+ 
Sbjct: 312 IDGAHNEDGARSLRKVLDKYFADRNLVLMLGMLEDKDID---TVLEILMPVFDRVVVTEP 368

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DNPR    +K++A+I              +A+   +E+  + +V++ AG
Sbjct: 369 DNPRKISADKLKAKIEKYTGNVEAVEKIEDALERVLEVAEEGNVVISAG 417


>gi|160942737|ref|ZP_02089979.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446011|gb|EDP23014.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
          Length = 461

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 83/268 (30%), Gaps = 7/268 (2%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        N+  DH+DY+ +      A  R                +       + R  
Sbjct: 182 LTPYLSVVLNIDNDHLDYYGSMGELKFAFKRFALMTQFMIFANADDKNTMDVMYTLDRRV 241

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                     Y+   ++  K        +   + +        P  G   +YNAL    +
Sbjct: 242 RTFAIDNHADYRAVNVNEYKPGFFEFDLKEWNTTDTTRIRLSVP--GRHNIYNALAMCAV 299

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C  +G+ +    E          RFE  G    G  +  DYAH    L   L   + +  
Sbjct: 300 CRFVGLSAEQCAEAALNFKGAGRRFEVYG-ECNGALVIDDYAHHPTELRATLNTAKEMGY 358

Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIPG 438
            R+I V       R +        +   + DI ++T      E  DP    A++   IPG
Sbjct: 359 KRLIAVHQPFTYSRTKMLFNDFVDVL-KIPDITVLTPIMGSREPNDPTITSAKLAAQIPG 417

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   +  EA     +     D+++  G
Sbjct: 418 SVLVNSLQEAADWVKQNAKPGDLVITLG 445


>gi|150025184|ref|YP_001296010.1| cyanophycin synthetase [Flavobacterium psychrophilum JIP02/86]
 gi|149771725|emb|CAL43199.1| Cyanophycin synthetase [Flavobacterium psychrophilum JIP02/86]
          Length = 874

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 118/376 (31%), Gaps = 32/376 (8%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + +   +G +   +  + +      + +++G T++   + Q++ +          A   
Sbjct: 481 RIPIIAVTGTNGKTTTTRLLAHIVKNNGYKVGFTTSDGIYVQNHMMEKGDTTGPVSAEYI 540

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFE 235
           L    V    +E +  G+ +  L   +      TN+  DH+           A+      
Sbjct: 541 LKDPTVEFAVLETARGGILRSGLGFSRCDIAIVTNIQEDHLGLSDIYTLDDLARVKATVV 600

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK----VCAIHNKQQV 291
             + KE  AI+ A+D Y  ++ K                    + K    V    N    
Sbjct: 601 RSVKKEGWAILNAEDDYCIKIAKELSCNVAYFSLTEDNAVIKKMCKEGKTVAVYENGYIT 660

Query: 292 TISVEGKDFDFLFPLPG-------EFQVYNALVAAGLCIAIGIDSALVLEHLEKLH---- 340
               E K                 +F + N L A       G  +  +   L+       
Sbjct: 661 IKKGEWKIRVERATHVPLTLGGKAKFMIANVLAATLASYLYGFKTEDISLSLQTFIPSVA 720

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR        +  ++ VD+AH       I   +  I + + I +    GDR      
Sbjct: 721 QTPGRMNI--FEFKKFKVLVDFAHNPAGYRGIEGYLENIDAIKKIGIIAGVGDRRDEDIK 778

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAI 453
             G IA  + D  I+  +   R    E+I   I+ GI               IEAI+ AI
Sbjct: 779 ECGLIAGRMFDHIIIRQEKYLRGRTEEEIIDLILEGIAESGREVTHEIIPKEIEAIKHAI 838

Query: 454 EMLNKQ-------DVL 462
           +            DV+
Sbjct: 839 DNAEVGSFITALSDVV 854


>gi|225850494|ref|YP_002730728.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
 gi|254766015|sp|C0QPY2|MURC_PERMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225645302|gb|ACO03488.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
          Length = 459

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 144/414 (34%), Gaps = 50/414 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGT 123
           GA+ +V SSA    +           P +     R + L+      YG      +A+ G+
Sbjct: 65  GADVVVYSSAVKQDNPELLRAKQLGIPTI----PRGEMLAELMRFKYG------IAIAGS 114

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  I  ++G     +     + ++  + +L +   I      S  S     
Sbjct: 115 HGKTTTTSMVGTILGKTGYDPTVV-IGGKLEAYGSNAKLGSGDFIVTEADESDGSFLK-- 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +     S  N+  +HI +++       A +    ++    + 
Sbjct: 172 ------------------LTPTIVSINNIDLEHIGFYKNLNDIKRAFIDFANKVPFYGAV 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+   +                 +     +   I    +   + + +  ++  G+ +   
Sbjct: 214 AV---NIDDQNIKDIIPEIEKKIIRFGISEDSDIRGYDLRLENGRYRFKVNDFGEIY--- 267

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  VYNAL A  + + +G+   ++ E LE       RFE     S    +  DYA
Sbjct: 268 LSIPGKHNVYNALAAISISVELGVPFCVIKEALENFKNANRRFEIKYDGSV--TVIDDYA 325

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRS 422
           H    ++  L   R +  GR I+         +          + ++ DI ++T+  P  
Sbjct: 326 HHPTEIKATLSATREMFDGRRIIAVFQPHRYSRTFSLYDHFVRSFNIPDITVITEIFPAG 385

Query: 423 EDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P      EK+ ++I        +   +  +       +L K DVL++ G G+
Sbjct: 386 ESPIDSVNGEKLSSDIKKETGKTVLYGEDLQKTFNILKNILKKDDVLLILGAGN 439


>gi|94970655|ref|YP_592703.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|166222948|sp|Q1IKH1|MURC_ACIBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94552705|gb|ABF42629.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 131/421 (31%), Gaps = 54/421 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIR--SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE +V SSA   ++        ++ P++      + L+      YG      +A+ G  
Sbjct: 64  GAEVVVTSSAIDSRNPEVAEAHANHIPVIQRA---EMLAELMRLKYG------IAIAGMH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +    G     +     + +   + RL     +      S  S      
Sbjct: 115 GKTTTTSMVAAVL-AGGELDPTVIVGGRVDAMGSNARLGKSHYLVAEADESDRSFLK--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  I    TN+ R+H+D +   +      +   + +       
Sbjct: 171 -----------------LWFIHAVVTNIDREHMDTYHDMEDVERTFVEFMDRVPFYGMVV 213

Query: 245 IIYADDAYSKEV---MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF- 300
               ++     +    +R    G    S           +   +    + ++   GK   
Sbjct: 214 ACNDNEPLRAILPRVRRRIVTYGTTEGSDFLIRCVPCDSEQLLLGFLNRFSVEYRGKSLG 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +FL  +PG   V NA  A  + + + I +  +   L +   V  RF+  G  +    +  
Sbjct: 274 EFLLRVPGLHNVRNATAAIAIGVGLDIPADKIRAALAEFRGVDRRFQLKG-KANDISVID 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDD 418
           DY H    +   L   +      I VVF     R    R +M + A     AD   + D 
Sbjct: 333 DYGHHPTEIRATLAAAKQCGFRHIHVVF--QPHRYTRTRDLMDEFASSFGDADSLYLLDI 390

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE----------MLNKQDVLVVAGKG 468
            P SE P +             E   R  A   A                 D+++  G G
Sbjct: 391 YPASEQPIEGVN-TEALARRITEVSGR--ATFYAKSFQVAAIMAATAAEPGDMILTLGAG 447

Query: 469 H 469
           +
Sbjct: 448 N 448


>gi|323706228|ref|ZP_08117795.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534392|gb|EGB24176.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 465

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 121/420 (28%), Gaps = 43/420 (10%)

Query: 67  GAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V ++A    +         N P +   +    L     +         + V G+ 
Sbjct: 67  GADLVVYTAAVKEDNPEMIRARELNIPTI---DRATLLGEIMKKYT-----YGVGVAGSH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  + +        +     +     + R+               S      
Sbjct: 119 GKTTTTSLISVLLEEMNYDPTVL-VGGEVDIIGGNVRVGNSEYFITEACEYTDSFLKFY- 176

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH+DY +       +    F  L+P +   
Sbjct: 177 -------------------PYIAVILNVDSDHLDYFKNIDNIKQS-FTQFANLVPNDGFV 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   DD  +  V+K  +                   K                    F  
Sbjct: 217 VACGDDPNTMSVLKNVNRNIITFGLDSNCTWNAKNIKFDEKGFPSFDVYHNGTFVERFEL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G+  + NAL    +C  +G+D     + ++K      RFEF GT   G  I  DYAH
Sbjct: 277 SIVGKHNILNALATLSVCHLLGVDIKKTPDIIKKFKGTHRRFEFKGTID-GAVIIDDYAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L +       RII VF      R             D ADI I+TD     E
Sbjct: 336 HPTEIKATLSSALNYPHNRIICVFQPHTYTRTYSLLNDFAASFDD-ADITIITDIYAARE 394

Query: 424 D------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                   E +   I              + +      +   D+++  G G   V+ + N
Sbjct: 395 KDTGIVRAEDLANLIKDRGNEVYYIKEFSDIVDYLKGTIKNGDLVITIGAG--DVYEIGN 452


>gi|238917838|ref|YP_002931355.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
 gi|259509770|sp|C4Z4L9|MURC_EUBE2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238873198|gb|ACR72908.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
          Length = 459

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 80/284 (28%), Gaps = 13/284 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+D+ +      ++     E+L    +  I    D Y          
Sbjct: 178 NPTMNIILNVKEDHLDFFKDIDDIRHSFKLFTEKLPSDGTLIINTDIDNYEYFYQDTDCE 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                                 +       +    K       +PG   VYN+L A    
Sbjct: 238 VITFGSDPAKSMYSASDIAYDELGRCTYSLLINGEKADTITLGVPGLHNVYNSLAAIAAT 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             + +D   +   L        RFE  G    G  +  DYAH  + +   L +       
Sbjct: 298 RKLSVDMEHIKAGLSNFKGTNRRFEKKG-TFNGVTVIDDYAHHPDEIRATLSSAAHYPHN 356

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHG 435
           R+ VVF      R +         AL  AD  ++       E          +  +I   
Sbjct: 357 RVWVVFQPHTYSRTKLLFNEFAD-ALSHADKVVLAKIYAARETDTLGISSADLCEKIKSL 415

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
               +   N  +  +  ++     D+L+  G G     I   GE
Sbjct: 416 GKECVYIDNFEDIEKYLLKNCINGDLLITMGAGD----IYKVGE 455


>gi|54295451|ref|YP_127866.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
 gi|59798133|sp|Q5WTI7|MURC_LEGPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53755283|emb|CAH16777.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
          Length = 469

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 135/418 (32%), Gaps = 49/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
           +GA+ +V SSA    +           P++     R   L+      +G      +A+ G
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVI----PRAAMLAELMRFRHG------IAIAG 122

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S V  +    GL            SF    +L +         L   +   V
Sbjct: 123 THGKTTTTSLVSSLLAEGGLD----------PSFVIGGKLNSCGA---NAQLGKSAYFVV 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                +AS   L          +    TN+  DH+D ++            F   LP   
Sbjct: 170 EADESDASFLFLK--------PMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  +D     ++                           + ++  V      K    
Sbjct: 222 LAVVCLEDEEICRILPAIQRPTLTYGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTI 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
            F  PG   V NAL +  +   +G+D   ++  L+K   V  RF+ +G          I 
Sbjct: 282 QFQYPGRHNVLNALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIV 341

Query: 360 VDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
            DY H    +   +   R +    R++ VF      R Q         AL L+D  ++ D
Sbjct: 342 DDYGHHPQEILSTIDAFRRVWPERRLVHVFQPHRYTRTQSLHRQFVD-ALSLSDELLLMD 400

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
                E        E +  EI              ++++  ++  +   DV+++ G G
Sbjct: 401 IYAAGETAIPGVTSENLANEIRSRDKRVTIVS--EQSLKATLDEFIKDGDVILMQGAG 456


>gi|308070406|ref|YP_003872011.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
 gi|305859685|gb|ADM71473.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
          Length = 459

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 137/413 (33%), Gaps = 43/413 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A S  +          I     T     + A  L  +     +AV G  G
Sbjct: 62  AGADIVVYSTALSRDNVERVAAEELNIP----TLHRSQMLARLLNER---KGIAVAGAHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  + +R  +                   +       L        S+ V   
Sbjct: 115 KTTTSSMIALVMERCNVD---------------PTYIIGGEITNLGTNAKAGKSEFVVAE 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+    L  H   GI       TN+  DH++ +        +    F   +  +  AI
Sbjct: 160 ADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAI 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           + ADD   +E++ +                      +     +   T+S +G        
Sbjct: 214 VCADDQNIREMLPQLQTRVITYGVEHEADYM--ATDIQLGDRRLSFTMSRKGTALGTIEL 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  +YNA+     C+  GI    +   + + H    RF+ +G  S    I  DYAH
Sbjct: 272 SVPGKHNMYNAMATVISCLEAGIPFDQIAATIVEFHGAKRRFQVLG-ESNDILIIDDYAH 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPRS 422
               +E  +   R  T  RII VF      R         +   + A   I+TD  +P  
Sbjct: 331 HPTEIEATISAARA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFSE-ASEVIITDIYSPAG 388

Query: 423 ED------PEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E         K+   I+       I    +   I    + L   D+++  G G
Sbjct: 389 EKQIEGVHSSKLVDLIVQNSNANAIYLPTKEAVIEELKDRLQPGDLVLTMGAG 441


>gi|308273170|emb|CBX29773.1| hypothetical protein N47_F14680 [uncultured Desulfobacterium sp.]
          Length = 437

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGT 351
           I+    D         + +    ++AA   +    +     +    K    PGR E V +
Sbjct: 247 INNVWPDMQINLHGDHQIENAALVLAACEILEKKTNLSEKHIRAGLKQTNWPGRLEIVSS 306

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +     + +D AH  N+ + +   +     GR I V     D    K   M K  L ++D
Sbjct: 307 SPC---VILDGAHNLNASQALHNFLSKEYKGRKITVVTGMLDDKPYK--SMLKNILSVSD 361

Query: 412 IAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            AI+T     R+ +PEK+ A   + +          EA++ A+E     +V+ + G
Sbjct: 362 RAILTKPQIDRALEPEKLYAVSKNLVKDIKIIPKVDEAVKYALETALPDEVICITG 417


>gi|299065609|emb|CBJ36781.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CMR15]
          Length = 483

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 80/430 (18%), Positives = 132/430 (30%), Gaps = 68/430 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F   LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-----TNSRGG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALDLA 410
            +  DY H    +   L   R    GR +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFIKVLGTV----- 388

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPG------------FIEKGNRIEAIRTAIEMLNK 458
           D  ++ +     E P  I A     +                +  +  +AI  A      
Sbjct: 389 DALLLAEVYAAGEPP--IVAADGRALTRALRVAGKIEPIFVEQIEDMPQAILDA---AQD 443

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 444 NDVVITMGAG 453


>gi|239945137|ref|ZP_04697074.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|239991598|ref|ZP_04712262.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 11379]
 gi|291448599|ref|ZP_06587989.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
 gi|291351546|gb|EFE78450.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
          Length = 466

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 138/411 (33%), Gaps = 41/411 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +      +   I VV  +   L+   + L        +AV GT GK+
Sbjct: 70  ASCVVVSSAIRADNPELLRANELAIPVVHRS-DALASLMNGL------RAIAVAGTHGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +          +        +     +               S  S Q       
Sbjct: 123 TTTSMLAVALSSL-SLAPSYAIGGDLEGPGTNATHGEGDIFVAEADESDRSFQKYD---- 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH   + +    +++      +++P  +  I  
Sbjct: 178 ----------------PEVAIVLNVELDHHANYASMDEIYDSFETFVGKVVPGGTLVISA 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                 +   +    A  +V++ G  +   + + KV       +VT+ + GK   F   +
Sbjct: 222 DQPGAVELTRRVRDLADLKVVTYGSAEDADVRVHKVTPRGLTSEVTVLLNGKFLTFTVSV 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG    +NA+ A    +A+GI +  +   L     V  R +  G  + G ++   YAH  
Sbjct: 282 PGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVKRRLQLKG-EAAGVQVIDSYAHHP 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   L+ +R   +   I+V        R Q     MG+ AL LAD ++V D  P  ED
Sbjct: 341 TEMTADLEAMRGAAADARILVVFQPHLFSRTQELGTEMGQ-ALALADASVVLDIYPARED 399

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           P        I               ++ + +  AI  M    D+++  G G
Sbjct: 400 PIPGITSALIIDAAKTAGAEVTAVHDQAD-VPAAIAGMAKPGDLVLTMGAG 449


>gi|77462652|ref|YP_352156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387070|gb|ABA78255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 477

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 149/457 (32%), Gaps = 44/457 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +FVA+  ++ DGH F+ +A+A+GA A +VS           +  + 
Sbjct: 25  TGVSIDTRSLGPGDLFVALT-DQRDGHAFVAEALARGAAAALVSR------RPEGLPEDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++ VTG+ GK+S    ++      G         
Sbjct: 78  PLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKTSTKEMLRATLGGQGTVHAAEASY 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  + +    V        +H  +   L  +     +  
Sbjct: 138 NNHWGV----------PLTLARMPADVDFAVVEIGM----NHPGEIAPLSRLARPHLALI 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                         +    +     E L     AI+ A    S  +  RA   G   ++ 
Sbjct: 184 TTVAAAHLEAFDSLSAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARAAALGVPAVTF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L  +           S  G  F F    PG     NAL       A+G+D 
Sbjct: 244 GQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATLAAAEALGLDL 303

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNS-----------LEMILK 374
            +    L       GR                  +D A  +N                  
Sbjct: 304 TIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASLELLAAMAPTD 363

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKIRAEI 432
            +  I +GR I + G   +    +  +   +A    LA+IA+V    PR     +   E 
Sbjct: 364 GVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR----MRALHEA 419

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           +             E +  A  +++  D+++V G KG
Sbjct: 420 LPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp.
           MP688]
 gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           MP688]
          Length = 460

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 131/395 (33%), Gaps = 41/395 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V+S   +L +          I VV +         ++   +    ++A+TG +GK++V
Sbjct: 71  LVVISPGVALAEPEVQQALANGIQVVGDV-----ELFAQFRPR-SSKVIAITGANGKTTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++C+ +GL +   G        A     T  +P                   +E 
Sbjct: 125 TTLVGEMCKAAGLKTVVAGNIGLPVLDALRQVETDGAP---------------DVYVLEL 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +   A +  N+  DH+D +     Y  AK R+ +        A +   
Sbjct: 170 SSFQLET--TSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARILKG-------AGVQVL 220

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +         A      V          H   + A+H++  +              +PG 
Sbjct: 221 NREDAWCRNMALPDQPVVTFGLDLPVESHAYGLLALHDQLWLAQGAHPILHVEELRIPGL 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  LC AIG+D A +   L +   +P R E+V                  + 
Sbjct: 281 HNAANALAALALCRAIGVDWAPLQHVLREFKGLPHRVEWVADLHDIAFYDDSKGTNVGAT 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +      R +V+   G  + Q   P+  +     A   ++        D   I 
Sbjct: 341 CAALAGLP-----RKVVLIAGGDGKGQDFSPLR-EPVDQNARAVVLI-----GRDAALIE 389

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A +       +   +  EA++ A       D +++
Sbjct: 390 AALQGSPVPRLHAASLEEAVQQAYAAATPGDAVLL 424


>gi|89255606|ref|YP_512967.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501556|ref|YP_001427621.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010129|ref|ZP_02275060.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367001|ref|ZP_04983037.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|290953734|ref|ZP_06558355.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312920|ref|ZP_06803641.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|109892705|sp|Q2A5N4|MURC_FRATH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224689|sp|A7N9L2|MURC_FRATF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89143437|emb|CAJ78613.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica LVS]
 gi|134252827|gb|EBA51921.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           holarctica 257]
 gi|156252159|gb|ABU60665.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 451

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 93/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +              + +     I       I  +G D  F   LPG + V NA      
Sbjct: 229 SDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQNATACIIT 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I+
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALSLADQLILLPTYSADEQIIKGAESQDIV 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++       AI    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHAIYFLEKLANENTVILIQGAG 440


>gi|319639047|ref|ZP_07993804.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
 gi|317399625|gb|EFV80289.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
          Length = 469

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 136/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLY 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                  +   +  +  + + T+ V+ K  +
Sbjct: 212 GKAFLCIDSEHVRAILPKISKPYATYGLDDTADI--YATDIENVGAQMKFTVHVQMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QEPFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RI----YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 330 GGAALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +  +  + +L   DV++
Sbjct: 389 DALVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|270159082|ref|ZP_06187738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|289166082|ref|YP_003456220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
 gi|269987421|gb|EEZ93676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|288859255|emb|CBJ13189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
          Length = 484

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 118/381 (30%), Gaps = 59/381 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TGT+GKS+V + V ++ + +G      G   T      ++              
Sbjct: 105 APVIAITGTNGKSTVTTLVGEMAKAAGYKVAVAGNIGTPVLDMLNDE------------- 151

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  LD      ++ IA +  N+  DH+D H T +AY  AK R++
Sbjct: 152 -----HQYDLWVLELSSFQLDL--TYSLEPIAATILNVTPDHLDRHHTMEAYIQAKQRIY 204

Query: 235 E-------ELLPKESPAIIYADDAYSKEV--------------MKRAHNAGCRVLSVGYQ 273
                         +  +  + D                    +  A +   +       
Sbjct: 205 HKARVALFNRDDFYTVPMTSSHDDAKISQELSTNKTSSILREPLSHACSEREKEEIHLRG 264

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG----------EFQVYNALVAAGLCI 323
                     A        I+ E K +                      +NAL A  L  
Sbjct: 265 NVNRISFGKDAPEKNNWGLINQENKIYLAKGHTCFLPVESVLIKGVHNWFNALAACALAD 324

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
             GI    ++E L     +P R ++V T      I         +    +  I     G+
Sbjct: 325 IAGITQQHIIEVLTTFTGLPHRCQWVRTLDGVDWINDSKGTNIGATISAINGIGGSMQGK 384

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           I+++ G  G     K     ++   +AD           ED +KI    +  +       
Sbjct: 385 IVLIAGGQG-----KGADFKELTQPIADFV--RSIVLIGEDADKI-EAALANVVPISRAS 436

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +   A+  A       DV+++
Sbjct: 437 SLDNAVEVAKLQAKPGDVVLL 457


>gi|242308906|ref|ZP_04808061.1| predicted protein [Helicobacter pullorum MIT 98-5489]
 gi|239524570|gb|EEQ64436.1| predicted protein [Helicobacter pullorum MIT 98-5489]
          Length = 60

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
           + NR  AI+ AI+ L   +VL+V GKG E   I+ + E     D + I++ L L
Sbjct: 4   EENRALAIQRAIKELCDDEVLLVLGKGDEKYQIIGD-EMLHFDDVEEIQKSLQL 56


>gi|229047597|ref|ZP_04193187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
 gi|228723844|gb|EEL75199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
          Length = 450

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKILFSTTKENEDGACIKDNALY-------FKGEKVIEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|145296119|ref|YP_001138940.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           R]
 gi|166224333|sp|A4QFM2|MURC_CORGB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3868935|dbj|BAA34293.1| MurC [Corynebacterium glutamicum]
 gi|140846039|dbj|BAF55038.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 146/425 (34%), Gaps = 60/425 (14%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R+     P++   +    L               + + GT GK
Sbjct: 80  VVVTSFAAIPQDNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G+          ++    +    T          S  S        
Sbjct: 131 TSTTSMSVVAMQAAGMD-PSFAIGGQLNKAGTNAHHGTGEVFIAEADESDASLLRYK--- 186

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+D+ +T +AYF      F   +      ++
Sbjct: 187 -----------------PNVAVVTNVEPDHLDFFKTPEAYFQV-FDDFAGRITPNGKLVV 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---------QQVTISVEG 297
             +D ++ E+ +R+   G + +  G         +V A+             + TI+++G
Sbjct: 229 CLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +  +PG+  V N   A      +G D   ++E L     V  RFEF G    G  
Sbjct: 289 QEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKF 348

Query: 358 I----YVDYAHTSNSLEMILKNIRTITS----GRIIVVFG-CGGDRDQGKRPIMGKIALD 408
                Y DYAH    +  +L   RT       GR+IV F      R    +    + AL 
Sbjct: 349 NGAAIYDDYAHHPTEVTAVLSAARTRVKAAGKGRVIVAFQPHLYSRTMEFQKEFAE-ALS 407

Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD A+V +     E P      +I  + +  IP  + + N         E+    D+++
Sbjct: 408 LADAAVVLEIYGAREQPVDGVSSEIITDAMT-IP-VVYEPNFSAVPERIAEIAGPNDIVL 465

Query: 464 VAGKG 468
             G G
Sbjct: 466 TMGAG 470


>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbaspirillum seropedicae SmR1]
 gi|300074270|gb|ADJ63669.1| cyanophycin synthetase protein [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 122/371 (32%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++    +  +  ++GL     G T+T   +    R  T        A + L
Sbjct: 473 VAVAGTNGKTTTVRLITHLLAKTGLRV---GMTNTDGVYIDGQRTDTGDCSGPRSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQAY-------- 226
               V    +E +  G+ +  L   +      TN+G        Y  T +          
Sbjct: 530 FHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRVIV 589

Query: 227 -FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A              A + A    +                     + ++      +
Sbjct: 590 ENVAPTGTAVLNAADPMVAKMAASCPGAVTFFALDPTHPIMATHRAQGHRIVYRDGDAIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             +      ++             FQV N + + G   A+ +D   +   L         
Sbjct: 650 AAQGSFEKRLKLSGIPLTRAGAIGFQVENVMASVGAAWALNLDWEQITGALASFISDSGT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF     + +G  +  DY H  ++++ ++K + ++ + R  VV    GDR       
Sbjct: 710 APGRFNL--FDYKGATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGAGDRRDVDITR 767

Query: 402 MGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIE 454
             ++  D  D  ++  D   R  +  ++ A +  G+       +  E      AI TA+ 
Sbjct: 768 QTELLGDAFDEVVLYQDQCQRGREDGEVIALLRQGLSKASRTSDVKEINGEFLAIDTALG 827

Query: 455 MLNKQDVLVVA 465
            L   D+ ++ 
Sbjct: 828 SLQPGDLCLIL 838


>gi|167622393|ref|YP_001672687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352415|gb|ABZ75028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 439

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 128/395 (32%), Gaps = 56/395 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   + +     +  +  I V+ +         +R   +    ++ +TG++GK++V 
Sbjct: 70  IIISPGIACETPEVRVAFDMGIEVIGDV-----ELFAREVSQGSAKVIGITGSNGKTTVT 124

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +  G S    G                   + L      L         +E S
Sbjct: 125 TLVGEMAKACGCSYAVGGNIGVP-------------ALDLLLEPKEL-------YILELS 164

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      ++  A +  N+  DH+D +   ++Y  AK++L+++              
Sbjct: 165 SFQLET--THSLQCTAATCLNISEDHMDRYSDLESYRQAKLKLYKQ-------------- 208

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGE 309
                +  R             +   +   ++ A      + +    +        L G 
Sbjct: 209 -SKMVLFNREDALTVPNNPTNQESFGLDAPEMDAWGISGGMIVHGSSQIMAVSDVALVGS 267

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N + A  L  A GI+    +E  +    +  R E V   +    +    A    + 
Sbjct: 268 HNHANIIAAMALATAAGIERDFQIEVAKTFSGLAHRCEVVAEIAGVTYVNDSKATNIGAT 327

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +  +         ++   GGD        +  +   ++ + ++  D           
Sbjct: 328 VAAIDGLSEHLGE---LILIAGGDGKGADFKPLEPVLEKVSQLIVLGKD----------A 374

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +I    P  I+     EA+  A E+    D++++
Sbjct: 375 DKIAALKPEAIKVTTMAEAVLKANELATAGDIVIL 409


>gi|224368810|ref|YP_002602971.1| FolC [Desulfobacterium autotrophicum HRM2]
 gi|223691526|gb|ACN14809.1| FolC [Desulfobacterium autotrophicum HRM2]
          Length = 480

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
             +++        PGR E   T  +   + +D AH   +   + +      +  R+ +V 
Sbjct: 329 DEIIQRGISKTQWPGRLE---TIMQTPFVVIDGAHNLAAAINLARYFEEKFSDKRLTLVL 385

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDP---EKIRAEIIHGIPGFIEKGN 444
           G   D+D      M K  +  AD  I T  DN RS DP   E+    +  G         
Sbjct: 386 GILDDKDFS---SMLKQFVPWADRIIFTRADNKRSIDPHLLEQTARTLFTG--EITVIEK 440

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             +A+  AI   + QD + +AG
Sbjct: 441 VGDAVAHAIATSSSQDAVCIAG 462


>gi|258511796|ref|YP_003185230.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478522|gb|ACV58841.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 463

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 150/424 (35%), Gaps = 48/424 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   P+ +  GA+ +V S+A    +    A    N P++     R  +   A  +  + 
Sbjct: 55  GHR--PEHVE-GADIVVHSTAVKQDNVELQAARALNIPVIH----RSEM--LARLMDDR- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AVTG  GK++  S +    +++GL    I     + +   DN      P  +A+A
Sbjct: 105 --VGIAVTGAHGKTTTTSMIAFAMEQNGLDPTFI--VGGVVADLGDNAKAGKGPFVVAEA 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                            S G   H    I       TN+  DH++++  +          
Sbjct: 161 D---------------ESDGSFLHYRPAI----AVVTNVEPDHLEHYDGKFENLVRAYET 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P E   ++ ADD   +E+   A                    ++    ++  V +
Sbjct: 202 FIRQIPSEGLLVMSADDDKLRELRSAARCRVVTYGFAEDADITARHVELGDRASRSDVLV 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + +         LPG+  V NAL A  +C+ +G+        L + H    RF+ V    
Sbjct: 262 NGKF-VGTLQLALPGKHNVLNALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVVA-EV 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
               I  DYAH    +   +   ++ T  RI+ VF      R         K   + AD 
Sbjct: 320 GDVLIVDDYAHHPTEIRATIAAAKS-TGRRIVAVFQPQRYTRTFFLFEEFAKAFGE-ADE 377

Query: 413 AIVTDD-NPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+ D  +P  E         ++ +EI     P         + I   ++ +   D+++ 
Sbjct: 378 VILCDIYSPAGERKIDGVSAARLASEIARMSNPHTRYIPTHDDVIEYLVQSVRPGDLVLT 437

Query: 465 AGKG 468
            G G
Sbjct: 438 MGAG 441


>gi|240014781|ref|ZP_04721694.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI18]
 gi|240017229|ref|ZP_04723769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA6140]
 gi|240081134|ref|ZP_04725677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA19]
 gi|240121304|ref|ZP_04734266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID24-1]
 gi|240124137|ref|ZP_04737093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID332]
 gi|240126247|ref|ZP_04739133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-92-679]
 gi|254494321|ref|ZP_05107492.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268597245|ref|ZP_06131412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268682762|ref|ZP_06149624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268684828|ref|ZP_06151690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
 gi|226513361|gb|EEH62706.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268551033|gb|EEZ46052.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268623046|gb|EEZ55446.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268625112|gb|EEZ57512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
          Length = 445

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 145/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQSDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVMNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F     +   A     D      MKRA     R         +      
Sbjct: 200 LLDYAHTKAKIFRGDGVQVLNA-----DDVFCRAMKRAGREVKRFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   +    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERGTGCLKQGNEDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|239628388|ref|ZP_04671419.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518534|gb|EEQ58400.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 479

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 134/419 (31%), Gaps = 48/419 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +        +F A      P+L   +  + L            +  +AV+GT GK++ 
Sbjct: 97  AAIHE---DNPEFMAVKEKGIPML---SRAELLGEMMRNY-----KQAVAVSGTHGKTTT 145

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I   +G     I     +     + R+ +P  +++ +A  Y +S    H ++E 
Sbjct: 146 TSMITDIL-LAGNLDPTISVGGILQDIGGNIRVGSPE-LFVTEACEYTNSFLSFHPTMEV 203

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+D+ +  Q   ++  RLF E LP     +I + 
Sbjct: 204 -------------------ILNIEEDHLDFFKDIQDIRHS-FRLFAEKLPSRGLLVINSG 243

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               +E+ K                                  +            + GE
Sbjct: 244 IDAVEEITKGLGCRVVTFGKDSSSTYTAKDITYDGFARPSYDLVIQGEVVNRITLGVTGE 303

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYN+L A  + + +G     V+  L K      RFE  G    G  I  DYAH    +
Sbjct: 304 HNVYNSLAAIAVAMELGAGFDAVMAGLRKFTGTDRRFEKKG-EIGGITIIDDYAHHPQEI 362

Query: 370 EMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE----- 423
           +  L   +     ++  VF      R +       +     AD  I+ D     E     
Sbjct: 363 KATLSAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAETLSA-ADEVILADIYAARETDTLG 421

Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKGHETVHIVTNGEK 480
                I   I           +  + I T  +E     DVL+  G G     IV  GEK
Sbjct: 422 VSSRDIAQRIERLGTKAHYIPSFDD-IETFILENCINGDVLITMGAGD----IVKVGEK 475


>gi|163741570|ref|ZP_02148961.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
 gi|161385304|gb|EDQ09682.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
          Length = 465

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 137/426 (32%), Gaps = 51/426 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           F+ QA      A  +V+SSA      +         P++        L            
Sbjct: 60  FVGQAAENLEDAAVVVISSAIKPGNPELDEARLRGLPVVRRAEMLAELMRL--------- 110

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +A+ GT GK++  + + ++    G     I     I ++  + R+            
Sbjct: 111 KSNIAIAGTHGKTTTTTMMAELMVA-GHFDPTIVNGGIIHAYGSNARMGQGE-------- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + VEA       +RL          TN+  +H+++        +     F
Sbjct: 162 ---------WMVVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGDFDTLRD-GFYDF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A+   D    + ++ R  +          Q        +          I 
Sbjct: 209 VSNIPFYGVAVCCTDHPEVQALVGRITDRRVVTYGFNAQADV-RATNLTYKAGVAHFDIH 267

Query: 295 VEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++ +D        P+PG+  V NAL A  +   +G+ S+ + E L     V  RF  VG 
Sbjct: 268 LQAEDRVIEGCTLPMPGDHNVSNALSAVAVARHLGMKSSEIREALAAFGGVNRRFTKVG- 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  I  DY H    +  +LK  R    GR+I V      R      +          
Sbjct: 327 EVDGVTIIDDYGHHPVEITAVLKAARQACDGRVIAV--HQPHRYSRLSSLFEDFCACFNE 384

Query: 410 ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           AD+  + +     EDP +       +   I HG        +  +  R   E     D++
Sbjct: 385 ADVVAIAEVFAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDESDLERLVREQARPGDMV 444

Query: 463 VVAGKG 468
           V  G G
Sbjct: 445 VCLGAG 450


>gi|92114314|ref|YP_574242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
 gi|118595648|sp|Q1QVG5|MURD_CHRSD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91797404|gb|ABE59543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
          Length = 455

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 114/358 (31%), Gaps = 37/358 (10%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +    +    I A+TG++ KS+V + + ++ + SG  +   G   T +    D    +P 
Sbjct: 103 ALFVRECRSPIAAITGSNAKSTVTTLLGEMARESGWKTAVGGNLGTPALDLLDE---SPD 159

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                               +E SS  L+      +     +F NL  DH+D H   Q Y
Sbjct: 160 A---------------ELFVLELSSFQLET--TPWLGADTAAFLNLSEDHLDRHGDMQGY 202

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK R+F         A++ A+D  +                       I         
Sbjct: 203 RAAKQRIFRGARH----AVVNAEDPATWPDAPSCAVTRFTTDMPESGEWGIVDHDGERWL 258

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            + +  I   G+                A+ A             +   LE+   +P R 
Sbjct: 259 AQGRAAIMPVGQVRMPGRHNHANALAALAMGAHLGL-----SREAMCRVLERFPGLPHRG 313

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           EF+        I         +    +  I +   GR+I++ G  G +     P+  +  
Sbjct: 314 EFIVEREGVRWINDSKGTNVGATLAAIAGIGSDLEGRLILLAGGDG-KGADFSPL-AEPL 371

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A  AIV        D E++   +   +P      +   A++ A  +    D +++
Sbjct: 372 AHHAREAIV-----FGRDAERLEQALSARLP-VTRVADLAAAMQRARTIARAGDTVLL 423


>gi|295093756|emb|CBK82847.1| folylpolyglutamate synthase/dihydrofolate synthase [Coprococcus sp.
           ART55/1]
          Length = 451

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 100/313 (31%), Gaps = 18/313 (5%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
               T      A A  Y S + V  + +E    GL+         +     ++  DH+ +
Sbjct: 131 WGRPTSFETETAVAFCYFSDKKVDFLLLETGMGGLEDATNVCSHPVCTIIASISMDHMHF 190

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                        ++ + L              + E+      A  +             
Sbjct: 191 LGN------TLRDIYRQKLGILKKNCPCVAYPLASELEDMWDMACEQNNISNLAVLIREK 244

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLE 337
                  +        +G+ ++   P   +        A    +           +    
Sbjct: 245 DIEICRESVGGSEYIYDGQRYELQVPGIYQIYNSATAAATAHVLMRLGYELTEDDIRRGL 304

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQ 396
           K     GRF+ +        +YVD AH       + +NI    +GR +I + G   D+D 
Sbjct: 305 KATFWKGRFQKL---MDKPLLYVDGAHNPGGWRALRQNIDEYFAGRDLIYICGVFKDKDY 361

Query: 397 GKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                M +I +  A   I V  DNPR+    +++      I    E+ +  +A+R  + +
Sbjct: 362 E---QMLRIMMPGASAFIAVEPDNPRALSRHELKRLAGTYIDEVYEQEDVDDAVRLTMTL 418

Query: 456 L-NKQD-VLVVAG 466
             ++QD V++V G
Sbjct: 419 ADDRQDPVVIVFG 431


>gi|256820163|ref|YP_003141442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581746|gb|ACU92881.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 108/349 (30%), Gaps = 38/349 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++       I + +GL     G      +                      
Sbjct: 105 VGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSFAELV------------------- 145

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +++   +  +E SS  LD   ++          N+  DH+D +  +   +          
Sbjct: 146 ATKNPPYYVLEISSFQLD--GIEHFAPHIAVLLNITPDHLDRYDYKFENYIDSKFRIAMN 203

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +    I  ADD    + +                   +   LK        +  T  +
Sbjct: 204 QTENDYLIYDADDEVITQWLSTHTIKSKLIPFSIEKELPQGAFLKDNKIYIMLENQTTEI 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + ++            + N + A+     + I +  + E L+     P R E V      
Sbjct: 264 DVEEISLRGKH----NIKNTMAASVAARLVNIRNNSLRESLKGFKGAPHRLEEVKVVDGV 319

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +    A   NS+   L  I+T      IV    G D+      ++  +   +  I  +
Sbjct: 320 TYVNDSKATNVNSVFYALDTIKT-----PIVWIVGGQDKGNDYNSLLPYVHEKVRAIVCL 374

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             DN        I     + I   +E  +  EA++ A     + D +++
Sbjct: 375 GVDNT------PIIQSFYNTIDTLVETRSMDEAVKLAQSFAQEGDTVLL 417


>gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica ST-640]
 gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica 020-06]
          Length = 445

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 144/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V  +     
Sbjct: 43  VAQIGKMFDGPVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVWGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQRA 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K ++F     +   A     D      MKRA               +      
Sbjct: 200 LLDYAHTKDKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  ++    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|288870137|ref|ZP_06113069.2| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
 gi|288868258|gb|EFD00557.1| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
          Length = 463

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 69/182 (37%), Gaps = 15/182 (8%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  VYN+L A  +C+ +GI   ++ + L K      RFE  G    G  I  DYAH  
Sbjct: 285 PGEHNVYNSLAAIAVCMELGISLEMIKKGLWKFTGTNRRFEKKG-ELGGITIIDDYAHHP 343

Query: 367 NSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-- 423
             +   L         ++ VVF      R +       + AL +AD  I+ D     E  
Sbjct: 344 QEISASLATALNYPHRKLWVVFQPHTYTRTKAFLDEFAE-ALSMADEVILADIYAARETD 402

Query: 424 ----DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKGHETVHIVTNG 478
                 + I   I           +  E I T  +E     D+L+  G G     IV  G
Sbjct: 403 NLGISSKDIVDRIEAKGVKAHYIPSFDE-IETFILENCIHGDLLITMGAGD----IVKVG 457

Query: 479 EK 480
           EK
Sbjct: 458 EK 459


>gi|323099951|gb|ADX23551.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus mycoides]
          Length = 450

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 131/405 (32%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLAFEMLKEGKKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +  ++        +        ++K+    +  ++V    +     
Sbjct: 219 YSVI-NADDADVMTLSAQSKGQKVLFSTTKEIEDGAYIKENALYYKGEKVAEVSDIV--- 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L+    V  R E+V T +        
Sbjct: 275 ----LPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           IV+   G DR      ++             IVT   
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLI-----PYFKHVKAIVTFGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +RA    G+          EA+  A       DV+++
Sbjct: 381 TA---PKLVRAAEKAGLDVIESVDTLGEAVVKAYAHSTDGDVILL 422


>gi|262195225|ref|YP_003266434.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
 gi|262078572|gb|ACY14541.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
          Length = 472

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 15/277 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TNL  +H+D++ +      A    F   LP    A +  D+A  + ++ +  
Sbjct: 173 LAPTFAVVTNLDPEHLDHYGSVDNLHRA-FINFLNRLPFYGLAAVCLDNAGVQAILPQIQ 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
                             + +       +       ++  +   P+PG+  V N+L    
Sbjct: 232 KRFVTYGMASQA--TYRARNIRPEGLVTRYVAWRRAEELGEIHLPMPGQHNVLNSLAVLA 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +C A+ +   +  + L+    +  RF   G    G  +  D+ H    +   L   R+  
Sbjct: 290 ICDALDVPFEVTAKALQSFEGIQRRFTVRG-EVAGITVVDDFGHHPAEVRSTLAGARSAF 348

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKIRAEI 432
             R I +      R    R    + A     AD  I+TD     E P      E +   +
Sbjct: 349 PSRRI-IAAFQPHRYTRTRDQFQEFARSFYDADKVIITDVFSAGEAPIEGATAEALAKAV 407

Query: 433 I-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              G         R +      E++ + D+++  G G
Sbjct: 408 STSGHGDVTHIARRADVAEHLSEIVREGDLVITLGAG 444


>gi|53726037|ref|YP_104093.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|67643628|ref|ZP_00442373.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|121599536|ref|YP_991820.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384790|ref|YP_001027313.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126449994|ref|YP_001082750.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|251766632|ref|ZP_04819734.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
 gi|254178949|ref|ZP_04885603.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|254202814|ref|ZP_04909177.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|254208156|ref|ZP_04914506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|254357640|ref|ZP_04973914.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|59798163|sp|Q62GS8|MURC_BURMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222963|sp|A3MR64|MURC_BURM7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222964|sp|A2S5U4|MURC_BURM9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222965|sp|A1V0R7|MURC_BURMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52429460|gb|AAU50053.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|121228346|gb|ABM50864.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei SAVP1]
 gi|124292810|gb|ABN02079.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126242864|gb|ABO05957.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|147747061|gb|EDK54138.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|147752050|gb|EDK59117.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|148026704|gb|EDK84789.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|160694863|gb|EDP84871.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|238525007|gb|EEP88437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|243065315|gb|EES47501.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
          Length = 465

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 84/429 (19%), Positives = 143/429 (33%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVP--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    ++S   + RL     I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGMGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DDA  ++++        R          +  + V A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCIDDANVRQIVPLISKPVVRYGF--AADAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G  
Sbjct: 261 RREGREPLPVVLNLPGLHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 353 SRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +        +  DY H    +   +   R    GR  +V      R    R         
Sbjct: 321 AAAGGGAYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNV 379

Query: 409 LA--DIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           L+  D  ++T+     E P      + +   +   G    +      E      ++    
Sbjct: 380 LSTVDALVLTEVYAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|92116836|ref|YP_576565.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter hamburgensis
           X14]
 gi|122418259|sp|Q1QNU2|MURC_NITHX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91799730|gb|ABE62105.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter hamburgensis
           X14]
          Length = 467

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 136/420 (32%), Gaps = 51/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT 
Sbjct: 66  GADVLVVSTAIRRDNPELMAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +    G     +     I+++  + RL     + +    S         
Sbjct: 117 GKTTTTSMVAALLDA-GDFDPTVINGGIINAYGTNARLGAGEWMVVEADESD-------- 167

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +       TN+  +H+D+ +T  A  +A  R F E +P    A
Sbjct: 168 ------------GTFLKLPTDVAIVTNVDPEHLDHFKTFDAVQDA-FRSFVENVPFYGFA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D    + ++ R  +          Q     +             +    K      
Sbjct: 215 VMCIDHPVVQSMVGRIEDRRIVTYGENPQADARLVDLAPNGGGSHFKVVFRNRKTDAAHE 274

Query: 305 ------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                 P+PG     NA  A  +   +GI  A + + +     V  RF   G    G  I
Sbjct: 275 VSDLVLPMPGRHNALNATAAIAVAHELGIPDATIRKAIAAFGGVKRRFTKTG-EWNGVTI 333

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVT 416
             DY H    +  +LK  R  T G+++ V      R    + +  +       AD  +V 
Sbjct: 334 IDDYGHHPVEIAAVLKAARESTGGKVVAVV--QPHRYTRLQSLFEEFCTCFNDADTVVVA 391

Query: 417 DDNPRSEDPEK-IRAE-----IIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
           +  P  E P   I  +     +       +       A+   I  +    D +V  G G+
Sbjct: 392 EVYPAGEAPIAGIDRDHFVLGLRAHGHREVVPLQEPAALAGVIAGLAKPGDYVVCLGAGN 451


>gi|240118594|ref|ZP_04732656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID1]
 gi|268604305|ref|ZP_06138472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
 gi|268588436|gb|EEZ53112.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
          Length = 445

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 144/422 (34%), Gaps = 50/422 (11%)

Query: 47  VAIVGNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL 102
           VA +G   DG +F    +  A+  G + + +S   S +             V+ +     
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQSDIEAFKQNGGRVLGDI---- 98

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R 
Sbjct: 99  -ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +      +E SS  L+    + ++  A +  N+  DH+D +  
Sbjct: 158 G----------------KKADVWVLELSSFQLE--NTESLRPTAATVMNISEDHLDRYDD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y + K  +F     +   A     D      MKRA     R         +      
Sbjct: 200 LLDYAHTKAEIFRGDGVQVLNA-----DDVFCRAMKRAGREVKRFSLEHEADFW------ 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   +    E        PL G     N + A  LC A+G+    +LEH++    +
Sbjct: 249 -LERGTGCLKQGNEDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGL 307

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G  +    I         +    +  ++       + V   G  + Q   P+ 
Sbjct: 308 PHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLR 362

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A    +        D  +IR ++        +     EA++TA       D++
Sbjct: 363 DALKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIV 416

Query: 463 VV 464
           ++
Sbjct: 417 LL 418


>gi|74316135|ref|YP_313875.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiobacillus
           denitrificans ATCC 25259]
 gi|118595702|sp|Q3SMH5|MURD_THIDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74055630|gb|AAZ96070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 474

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 133/406 (32%), Gaps = 55/406 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + QA+AQG EA+              +      L V N ++     A+    +    ++A
Sbjct: 89  VAQAVAQGVEAV------------GDVELFARALAVLNAQR-----AALPAPQAAMRVIA 131

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GKS+V +    +C+ +GL+    G                   +     +   ++
Sbjct: 132 ITGSNGKSTVTAMCGDMCRMAGLTVCVAGNIGLP-------------VLDALHEIEQGAA 178

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +E SS  L+      +   A +  NL  DH+D +    AY  AK R+F     
Sbjct: 179 PLPQVWVLELSSFQLET--TSSLDATAAAVLNLSEDHMDRYPDMAAYAAAKARIFSG--- 233

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++  DD  +  +             V   G             + ++ +  +   
Sbjct: 234 -NGVQVLNRDDPRTLAMA-------IPGRHVVSFGLDRCPTDENFGLCEDELCLGGDMLM 285

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  +PG     NAL A  L  A+ +    +L  L     +P R E V          
Sbjct: 286 PLSVLAVPGLHNAANALAALALTRALDLPIEALLRGLMHFKGLPHRVEKVADIDGVTWYD 345

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDD 418
                   + E  L        GR   V   GGD + Q   P+   +A +   + ++   
Sbjct: 346 DSKGTNVGATEAAL-----YGMGRRKAVVILGGDGKGQDFGPLKAAVAANARAVVLI--- 397

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                D   I A I              +A+  A  +    D +++
Sbjct: 398 ---GRDAVAIEAAIEDSGVASYRADTLPDAVEQAARLAEPGDAVLL 440


>gi|83648521|ref|YP_436956.1| UDP-N-acetylmuramate--L-alanine ligase [Hahella chejuensis KCTC
           2396]
 gi|109892707|sp|Q2S9Z3|MURC_HAHCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83636564|gb|ABC32531.1| UDP-N-acetylmuramate--alanine ligase [Hahella chejuensis KCTC 2396]
          Length = 472

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 137/419 (32%), Gaps = 49/419 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V SSA +  +   T  +    P++      + L+      +G      +A+ GT
Sbjct: 72  AGANVVVTSSAVAKDNPEVTAANEQRIPVIARA---EMLAELMRYRHG------VAIAGT 122

Query: 124 SGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S +  +   +G   +F IG    ++S   + +L          A +  S    
Sbjct: 123 HGKTTTTSLMASVLGEAGLDPTFVIG--GRLNSAGTNAKLG---ASRYLVAEADESDASF 177

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            H++   S                   TN+  DH+  +             F   LP   
Sbjct: 178 LHLTPMVS-----------------VVTNIDADHMHTYGGDFEKLKQTFVDFLHNLPFYG 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD   +E++ R   +                     +             D   
Sbjct: 221 VAVMCYDDPVVREIIPRVGRSVITYGFNEKADVRAVDIAQQGMQTSFTAKRPGGHPDLRI 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
              +PG+  V NAL    +    GI    ++  L K   V  RF+  G          + 
Sbjct: 281 SLNMPGKHNVLNALAVIAVATDEGIADEAIVSALNKFQGVGRRFQVYGNYPVDEGSVMLV 340

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
            DY H    ++  +K IR      R++ VF      R +       ++     D+ ++ D
Sbjct: 341 DDYGHHPREVDATIKAIRDGWPEKRLVAVFQPHRYTRTRDLYEDFVQVLSK-VDVLVLMD 399

Query: 418 DNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
             P  E      D   +   I   G    I    R + ++  +  +L   D+L+  G G
Sbjct: 400 VYPAGEKEIPGADGRSLCRSIRQRGQLDPIFIE-RGQDVKAVLSGVLQDGDLLLTQGAG 457


>gi|56707396|ref|YP_169292.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669867|ref|YP_666424.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456471|ref|ZP_03664944.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370904|ref|ZP_04986909.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874234|ref|ZP_05246944.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|68565692|sp|Q5NI50|MURC_FRATT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123169630|sp|Q14JK2|MURC_FRAT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56603888|emb|CAG44872.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320200|emb|CAL08255.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569147|gb|EDN34801.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840233|gb|EET18669.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158535|gb|ADA77926.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 451

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +              + +     I       I  +  D  F   LPG + V NA      
Sbjct: 229 SDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKDDDLSFKLQLPGRYNVQNATACIIA 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I+
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALSLADQLILLPTYSADEQIIKGAESQDIV 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++       AI    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHAIYFLEKLANENTVILIQGAG 440


>gi|296269384|ref|YP_003652016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
 gi|296092171|gb|ADG88123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
          Length = 462

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 130/413 (31%), Gaps = 59/413 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V S  +          +   I V+          A RL G      LA+TGT+GK
Sbjct: 66  GASLVVTSPGWRPDHPLLAAAAAAGIEVIGEV-----ELAWRLRGDGAAPWLALTGTNGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  +   +GL +  +G                               +    ++
Sbjct: 121 TTAVRMLTSMLTAAGLKALAVGNVGVPIV--------------------EAVREPYDVLA 160

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS  L      GI  +A +  N+  DHID+H + + Y  AK ++F          I 
Sbjct: 161 VELSSFQLHWS--SGIAPLAAAVLNVAPDHIDWHGSLEEYAAAKAKIFRN----APTVIY 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---- 302
            ADD     + +    AG RV+             V       +  +       +     
Sbjct: 215 NADDERCARLAEPYRAAGRRVVGFTLGAPRPGQLGVVEDLLVDRAFVPDPRHTAEELATL 274

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                     V NAL AA L  A G+ +  V   L +    P R   V        +   
Sbjct: 275 ADVRPLAPHNVANALAAAALARAHGVPTGAVRRGLAEFVPDPHRIAHVARIGDVDYVDDS 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A   ++    L         R +V    G  +      ++ + A  L  + ++  D  R
Sbjct: 335 KATNPHAAAASLSAF------RSVVWIAGGQLKGADVDDLVRQAAGRLRGVVLLGADRAR 388

Query: 422 SEDPEKIRAEIIHGIPGFIEKG---------NRIEAIRTAIEMLNKQDVLVVA 465
                 IR  +    P               +R+  +  A ++    D +++A
Sbjct: 389 ------IREALERHAPHIPVVEVPGQDTGVMDRV--VTEAAKLAAPGDTVLLA 433


>gi|320007795|gb|ADW02645.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces flavogriseus ATCC
           33331]
          Length = 464

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 137/413 (33%), Gaps = 45/413 (10%)

Query: 68  AEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A ++VVSSA    +         + P++   +        AS + G      +AV GT G
Sbjct: 70  ATSVVVSSAIRADNPELVRAAELDIPVVHRSD------ALASLMDGL---RSIAVAGTHG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +        L          +     +               S  S Q     
Sbjct: 121 KTTTTSMLAVALSELALD-PSYAIGGDLEGPGTNATHGDGDIFVAEADESDRSFQKYA-- 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PA 244
                                    N+  DH   + +    + +      +++P  +   
Sbjct: 178 ------------------PEVAIVLNVELDHHANYASMDEIYESFETFVGKVVPGGTLVV 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                 A       R  ++   V     +G  + + KV       +VT+ + GK   F  
Sbjct: 220 AADQPGAVELTRRVRERSSVRVVTYGESEGADVRVHKVTPRGLTSEVTVVLNGKFLTFTV 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG    +NA+ A    +A+G+ +  +   +     V  R +  G  + G ++   YAH
Sbjct: 280 SVPGRHYAHNAVAALAAGVALGVPAHNLASAIGTYTGVKRRLQLKG-EAAGVQVIDSYAH 338

Query: 365 TSNSLEMILKNIR-TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +   L+ +R   +  R++VVF      R Q     MG+ AL LAD ++V D  P  
Sbjct: 339 HPTEMAADLEAMRGAASESRLLVVFQPHLFSRTQELGTEMGQ-ALALADASLVLDIYPAR 397

Query: 423 EDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
           EDP        I               +   A+  A+  M    D+++  G G
Sbjct: 398 EDPLPGVTSALIIDAAKAAGADVTAVHD-KAAVPAAVAGMAKPGDLVLTMGAG 449


>gi|89067826|ref|ZP_01155270.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
 gi|89046424|gb|EAR52480.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
          Length = 464

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 137/417 (32%), Gaps = 51/417 (12%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTG 122
           GAE +V+SSA      +     R   P++     R+   L+           ++ +AV G
Sbjct: 69  GAEVVVISSAIKPGNPELDEARRRGLPVV-----RRAEMLAELMRM------KSNIAVAG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  + V  +    G     +     I ++  + R+                    
Sbjct: 118 THGKTTTTTMVASLL-DHGRFDPTVINGGIIHAYGSNARVGEGE---------------- 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + VEA       +RL          TN+  +H+++  T++A        F   +P   
Sbjct: 161 -WMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGTEEALKK-GFYDFVSNIPFYG 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-- 300
            A+   D    + ++ R  +          Q     +         +             
Sbjct: 216 LAVCCTDHPDVQGLVSRITDRRVVTFGFNAQADVRAINLTYDKGVAKFDIALQGEGTVIE 275

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I  
Sbjct: 276 DCSLPMPGDHNVSNALSAVAVARHLGMKRDEIREALAAFGGVNRRFTRVG-EVGGVAIID 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDD 418
           DY H    +  +LK  R  T GR+I V      R      +  +       AD+  + + 
Sbjct: 335 DYGHHPVEIAAVLKAARQATEGRVIAV--HQPHRYSRLSSLFDQFCNCFNEADVVAIGEV 392

Query: 419 NPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E+P       + +   I  G        +  +  R   E     D++V  G G
Sbjct: 393 YAAGEEPIPGASRDDLVAGLIRAGHRHARAVTDEDDLERLVREQARPGDMVVCLGAG 449


>gi|313667818|ref|YP_004048102.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ST-640]
 gi|313005280|emb|CBN86713.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica 020-06]
          Length = 469

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--- 298
             A +  D  + + ++ +                  +   +  +  + + T+ V+ K   
Sbjct: 212 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTADI--YATDIENVGAQMKFTVHVQMKGHE 269

Query: 299 --DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QESFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|296504406|ref|YP_003666106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
 gi|296325458|gb|ADH08386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
          Length = 424

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 41  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 92

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 93  GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 134

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 135 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 192

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 193 YSVI-NADDADVMALSAYSKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVIEV 244

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 245 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 304

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 305 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 356

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 357 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 396


>gi|283850513|ref|ZP_06367801.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574084|gb|EFC22056.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 470

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 137/414 (33%), Gaps = 50/414 (12%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           A+ +V S+A      +         P++     R   L+       G      +AV GT 
Sbjct: 78  ADVVVKSTAVTNDNPEVVVARERGIPVI----PRAEMLAELMRLRTG------IAVAGTH 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I   +GL    I     ++++    RL     +      S         
Sbjct: 128 GKTTTTSLLATIFTEAGLDPTVI-IGGRLNAYGAGARLGQGEYLIAEADESD-------- 178

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  IA   TN+  DH+D++   +A  +A    F   +P     
Sbjct: 179 ------------GSFLCLAPIASVVTNVDADHLDHYAGIEAIDDA-FVEFLNGIPFYGVN 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD     ++ R +                 + +  A           +  +     
Sbjct: 226 VVCLDDPGVARLLPRINRPFVTYGFGEKARLRGRILETGAKSRFLVSLDGEDLGE--MRL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG   V NAL A G+ +  GI  A++ E L K   V  RFE  G    G  +  DY H
Sbjct: 284 NHPGRHNVQNALGAIGVSLETGIAPAVIAEALAKFGGVGRRFEIKG-ERAGVVVVDDYGH 342

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               +   L   R +   R +VV        + K  + G        AD  ++T+  P S
Sbjct: 343 HPAEIRATLATARAVYPDRRLVVAFQPHRFSRTK-ALFGDFCTCFEAADTLLLTEIYPAS 401

Query: 423 EDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           E P      E +   I            +   A+  A+  +L   D+L+  G G
Sbjct: 402 EAPIPGVSGESLARGIRQVSKTDVAYYPDFA-AVEAALPGVLRPGDLLLTLGAG 454


>gi|30022001|ref|NP_833632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 14579]
 gi|228960130|ref|ZP_04121794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229129190|ref|ZP_04258163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|229146484|ref|ZP_04274855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|60390083|sp|Q819Q2|MURD_BACCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29897557|gb|AAP10833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 14579]
 gi|228637117|gb|EEK93576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|228654427|gb|EEL10292.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|228799646|gb|EEM46599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 450

 Score = 65.3 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVIEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|297587603|ref|ZP_06946247.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
 gi|297574292|gb|EFH93012.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
          Length = 461

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 14/278 (5%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +           N+  DH+DY++    +  A    + + L + S AII  DD   + ++ 
Sbjct: 175 ILNYYPSMAIILNIDEDHLDYYKDL-NHIVATFIGYMKNLEENSKAIINIDDKNCEPLLS 233

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNAL 316
                         +  +         +      IS E   KD +F   + G   +Y+A+
Sbjct: 234 HIKGEIITFGIENEKADYNIHDITFNENGNPTFVISSEKFDKDEEFSLSIIGRHNIYDAV 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C    ID   + +++++   +  R E VG   +G  +  DY H    ++  LK +
Sbjct: 294 AAIIACYEFHIDIDTIRKNMKEYQNLHRRMETVGF-YKGCEVKTDYGHHPTEIKNTLKAL 352

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPE------KI 428
                G+   VF       + K  ++   A      D  IVT+     E  +       +
Sbjct: 353 DEHKKGKFYCVF-QPHTYSRTKM-LLDDFANAFYDCDEVIVTEIYAAREKFDSSIHSTDL 410

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +++             EA       ++  D+++  G
Sbjct: 411 VEKLVKNGVNAKYYKTFEEARDYLRSKVSDNDIVLTTG 448


>gi|167571348|ref|ZP_02364222.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           C6786]
          Length = 464

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 142/428 (33%), Gaps = 51/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLGVPIVP--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLTSAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R          +  + V A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCIDDPNVRQIVPLISKPVVRYGF--APDAQVRAENVEARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG++    +  LPG   V NAL A  +   + +  A + + L + + V  RF+  G  
Sbjct: 261 LREGREPLPVVLNLPGLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEI 320

Query: 353 SRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 321 PVAGGAYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 379

Query: 410 A--DIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +  D  ++T+     E P      + +   +   G    +      E      ++    D
Sbjct: 380 STVDALVLTEVYAAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARVGD 439

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 440 VVITMGAG 447


>gi|89901462|ref|YP_523933.1| FolC bifunctional protein [Rhodoferax ferrireducens T118]
 gi|89346199|gb|ABD70402.1| FolC bifunctional protein [Rhodoferax ferrireducens T118]
          Length = 441

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/388 (15%), Positives = 113/388 (29%), Gaps = 32/388 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A R+  +    ++ V GT+GK S    ++ I  ++G  +        +    +   L  
Sbjct: 36  VAERMQIRFDCPVITVAGTNGKGSTCVMLESILLQAGYRTGVYTSPHLVRFEERLRLLGE 95

Query: 165 P----------SPIYLAKALSYLSSQGVTHVSVE------ASSHGLDQHRLDGIKLIAGS 208
           P            +  A+    +                  S  GLD   L+        
Sbjct: 96  PVDAAQLIAAFESVERARCQDDVEVSLTYFEFSTLAILDVMSRSGLDVVILEVGLGGRLD 155

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N+         +      A +    E +  E   I+               +   R L
Sbjct: 156 AVNIIEPDCAIITSIDLDHMALLGPDRESIGYEKAGIMRTGRPVVVSDPVPPQSVLDRAL 215

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV----YNALVAAGLCIA 324
            VG     +      +   +Q        +     +P              L A      
Sbjct: 216 EVGADLWQVGRDFNVSGDRQQWAWAGRGRRYSGMAYPALLGANQLVNAAGVLAALMALRE 275

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383
               +A  + +      +PGRF+ V        + +D AH  +++  +  N+  +     
Sbjct: 276 RLPVTAQAVRNGFAFVELPGRFQIVPGQPA---LVLDVAHNPHAVAALTANLDAMGYFPT 332

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIR----AEIIHGIPG 438
              +FG   D+D     +M      L D    TD   PR+E    +     A+       
Sbjct: 333 THAIFGAMADKDV---ALMLARINPLVDKWYFTDLPTPRAESANALLLQWQAQNTRKDAS 389

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  +A++ AI   +  D ++V G
Sbjct: 390 AAVYADPQQALQAAISAADPTDRIIVFG 417


>gi|226943451|ref|YP_002798524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azotobacter
           vinelandii DJ]
 gi|226718378|gb|ACO77549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azotobacter
           vinelandii DJ]
          Length = 448

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 151/434 (34%), Gaps = 77/434 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVD----NTR------------------KFLS 103
           QGA   VV +  +  +  AT+++  P + V     +                      L 
Sbjct: 29  QGARFAVVDTRANPPEL-ATLKAQFPQVEVRCGELDVEFLCRASELYVSPGLALSTPALQ 87

Query: 104 LFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
             A+R                  I+A+TG++ KS+V + V ++ + +G      G   T 
Sbjct: 88  AAAARGVRLSGDIELFARYARAPIVAITGSNAKSTVTTLVGEMARAAGRRVAVGGNLGTP 147

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +    D        I L                +E SS  L+    + +     +  N+ 
Sbjct: 148 ALDLLD------DGIEL--------------YVLELSSFQLET--TERLNAEVATCLNVS 185

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH+D +   QAY  AK R+F          ++  DDA S+ ++           + G  
Sbjct: 186 EDHMDRYADLQAYHLAKHRIFRGARQ----VVVNRDDALSRPLVADR----LPCWTFGLG 237

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                   +   + ++ +    E         + G     NAL A  L  A+G+  A +L
Sbjct: 238 KPDFKGFGLLEENGEKCLAFQFETLMPVRELKIRGAHNQANALAAMALGHAVGLPFAPML 297

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG- 392
           E L++   +P R +++      G      A    +    ++ +    +G+++++ G  G 
Sbjct: 298 ETLKRFAGLPHRCQWLRDVREVGYYDDSKATNVGAALAAIEGLGADIAGKLVLIAGGDGK 357

Query: 393 --DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
             D    +RP       +     ++        D  +I A ++ G    +  G   EA+ 
Sbjct: 358 GADFSSLRRP-----VAEHCRAVVL-----LGRDAGRI-AVVLDGAVPLVRVGTLEEAVE 406

Query: 451 TAIEMLNKQDVLVV 464
            +  +    D +++
Sbjct: 407 RSASLAEAGDAVLL 420


>gi|326315566|ref|YP_004233238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372402|gb|ADX44671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 503

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 149/455 (32%), Gaps = 55/455 (12%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           V +D+R +QAG +FVA+ G + D + F+        +A    +A +L        +  P 
Sbjct: 39  VHTDTRTLQAGDLFVALRGERFDANEFLA-------QARAGGAAAALAHPGRLEAAGLPG 91

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V +T   L   A+    +    ++ VTG++GK++V      + +     +      + 
Sbjct: 92  IEVPDTLAALGALAAGWRARLDLPLIGVTGSNGKTTVTQMTAAVLRAWKGDAAFATQGNF 151

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
            +       L            + +   G+ H    A   G+ Q  +           N 
Sbjct: 152 NNDIGVPLMLLRLRA----AHEAAVIELGMNHPGEIAVLAGIAQPTV-------ALVNNA 200

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            R+H+++  T +A       +    LP    A+  ADDAY+      A    C    +  
Sbjct: 201 QREHLEFMHTVRAVAEENGSVISA-LPAGGVAVFPADDAYAPLWRGLAGARRCLAFGMEP 259

Query: 273 QGKFIHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                              V I      FD    + G   V NAL A    +A G     
Sbjct: 260 GSAAGVRCTRAHWEAGAWNVHIDTPLGGFDGTVRIAGRHNVANALAATACALAAGAPLDA 319

Query: 332 VLEHLEKLHVVPGRF--------EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +   L     V GR         +  G + R   +   Y    +S+   +  +  +   R
Sbjct: 320 IARGLAAFEPVKGRSRAFTAAVPQPGGGSRRITAVDDTYNANPDSMHAAIDVLGELPGPR 379

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI------- 436
           ++V+   G   DQG  P     A   A          R    E++ A    GI       
Sbjct: 380 LLVMGDMGEVGDQG--PQFHAEAGSHA----------RDRGIERLFALGALGIHAVQAFG 427

Query: 437 PGFIEKGNRI---EAIRTAIEMLNKQDVLVVAGKG 468
           P      +      A+R A         ++V  KG
Sbjct: 428 PQARHFDDMASLLAAVREAAPSAGS---VLV--KG 457


>gi|296166027|ref|ZP_06848477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898617|gb|EFG78173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 70

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 5  DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
          DL      +++      I P +  E ++   V  DSR +  G +F+A+ G + DGH +
Sbjct: 3  DLTVAQIADIVGGTLADISPQEAAELRVTGSVEFDSRAVGPGGLFLALPGARADGHDY 60


>gi|269215182|ref|ZP_05987878.2| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
 gi|269208127|gb|EEZ74582.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
          Length = 469

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 136/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                 I+   +  +  + + T+ V+ K  +
Sbjct: 212 GKAFLCVDSEHVRAILPKVSKPYATYGL--DDAADIYATDIENVGAQMKFTVHVQMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 QESFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 330 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 389 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 NMGAG 453


>gi|254509590|ref|ZP_05121657.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
 gi|221533301|gb|EEE36289.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
          Length = 469

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 138/417 (33%), Gaps = 49/417 (11%)

Query: 66  QGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + A  +VVS+A      +         P++   +    L             + +A+ GT
Sbjct: 69  KNAAVVVVSTAIKPGNPELDEARAQGLPVVRRADMLAELMRL---------RSNIAIAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + + ++    G     +     I ++  + R+                     
Sbjct: 120 HGKTTTTTMMAELMVA-GDFDPTVINGGIIHAYGSNARMGQGE----------------- 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA       +RL          TN+  +H+++        +     F   LP    
Sbjct: 162 WMVVEADESDGSFNRLPATI---AIVTNIDPEHMEHWGDFDQLRD-GFHEFVSNLPFYGL 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
           A+   D A  + ++ R  +   R      Q      + +          I ++ +D    
Sbjct: 218 AVCCTDHAEVQALVGRITDRRVRTYGFNAQADV-RAENLTYKGGVAHFDIHLQYEDKVIE 276

Query: 302 -FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
               P+PG+  V NAL A  +   +G+ +A + + L     V  RF  VG    G  I  
Sbjct: 277 GCTLPMPGDHNVSNALSAVAVARHLGMKTAQIRDALANFGGVNRRFTKVG-EIDGVTIID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDD 418
           DY H    +  +LK  R  T GR+I V      R      +          AD+  + + 
Sbjct: 336 DYGHHPVEIAAVLKAARQATEGRVIAV--HQPHRYSRLSSLFDDFCTCFNDADVVAIAEV 393

Query: 419 NPRSEDPEKIRAE-------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               EDP +  +        I HG        +  +  R   E     D++V  G G
Sbjct: 394 FAAGEDPIEGASRDDLVQGLIRHGHRHARAILSEDDLARLVREQARAGDMVVCLGAG 450


>gi|300690342|ref|YP_003751337.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
 gi|299077402|emb|CBJ50027.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
          Length = 483

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 134/425 (31%), Gaps = 58/425 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F   LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-----TNSRGG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKI----- 405
            +  DY H    +   L   R    GR +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKVLGTVDALLL 393

Query: 406 ALDLA--DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           A   A  + +IV  D        ++  +I        +  +  +AI  A       DV++
Sbjct: 394 AEVYAAGEPSIVAADGRALTRALRVAGKIEPVF--VEQIEDMPQAILDA---AQDNDVVI 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 TMGAG 453


>gi|225872736|ref|YP_002754193.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254766033|sp|C1F460|MURD_ACIC5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225794452|gb|ACO34542.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 461

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 136/416 (32%), Gaps = 51/416 (12%)

Query: 60  IPQ--AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSL--FASRLYG 111
           I Q  A+  G   ++      L   S  +  +TP LV    RKF    +     A+R   
Sbjct: 50  IEQGIAVEAGGHGLLTFRRQDLIVVSPGVPLDTPELV--QVRKFGLPIIGEVELAARFLK 107

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 LA+TG++GK++  S    I +R+       G          D+           
Sbjct: 108 ---GKTLAITGSNGKTTTTSLCGAILERAHQHVQVGGNIGLPVIALVDDSRDDG------ 158

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                          +E SS  L+    +  +       N+  DH+D H + + Y  AK 
Sbjct: 159 ------------WSVLEISSFQLET--TERFRPGIAVILNITPDHLDRHGSFENYVAAKE 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R+F      +  A+I   D  +        ++     S     +         I  +   
Sbjct: 205 RIFAAQTHDD--ALILNADDDAASRAAARASSRIFWFSRNRVIRQGAFVHEGNILFRAAE 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             + E        PL G   V N L A       G+ +  + + +     V  R EFV  
Sbjct: 263 DAATEPILPLSEIPLKGAHNVENVLAAVCAARLAGVSAEAIRDAVRDFRAVEHRLEFVAE 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIM-GKIALDL 409
                      A   ++    ++       G  +++ G   + D +  RP+M G++    
Sbjct: 323 IGGVSFYNDSKATNVDAARKAIEA---FPGGIHLILGGKDKNSDYRTLRPLMAGRV---- 375

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              A+ T         EKI    + G    I  G    A+  A    +  DV+++A
Sbjct: 376 --KAVYTI----GSAAEKIMTH-LDGAVPLIAAGTLDLAVNLAGGAASPGDVVLLA 424


>gi|153813010|ref|ZP_01965678.1| hypothetical protein RUMOBE_03418 [Ruminococcus obeum ATCC 29174]
 gi|149830957|gb|EDM86047.1| hypothetical protein RUMOBE_03418 [Ruminococcus obeum ATCC 29174]
          Length = 287

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 65/176 (36%), Gaps = 7/176 (3%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T+   G++++       + +     + A   +        V +  + L         + 
Sbjct: 93  QTLEYRGENYELALAGSYQTENAALALEALEVLGRVGYPTTVEQRKKGLKDTKWN-GRLT 151

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDL 409
              R     VD AH   + +M+  ++R    GR    + G   D+D    P + +     
Sbjct: 152 IIHREPLFIVDGAHNPAAADMLEDSVRKYFKGRKLFFIMGVFRDKDY---PYIIRKLCPY 208

Query: 410 ADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           A+  I   T DNPR+   +++  E+    P      +  +A+     M  ++DV++
Sbjct: 209 AEQIITIETPDNPRALPAQELAEEVKKCNPHVQAADSIPDAVDKIFAMAGREDVIL 264


>gi|134302664|ref|YP_001122633.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166224691|sp|A4J011|MURC_FRATW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134050441|gb|ABO47512.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 451

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 93/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +              + +     I       I  +G D  F   LPG + V NA      
Sbjct: 229 SDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQNATACIIA 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I+
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALSLADQLILLPTYSADEQIIKGAESQDIV 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++       AI    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHAIYFLEKLANENTVILIQGAG 440


>gi|163738719|ref|ZP_02146133.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
 gi|161388047|gb|EDQ12402.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
          Length = 465

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 137/426 (32%), Gaps = 51/426 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           F+ QA      A  +V+SSA      +         P++        L            
Sbjct: 60  FVGQAAENLEDAAVVVISSAIKPGNPELDEARLRGLPVVRRAEMLAELMRL--------- 110

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           ++ +A+ GT GK++  + + ++    G     I     I ++  + R+            
Sbjct: 111 KSNIAIAGTHGKTTTTTMMAELMVA-GHFDPTIVNGGIIHAYGSNARMGQGE-------- 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     + VEA       +RL          TN+  +H+++        +     F
Sbjct: 162 ---------WMVVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGDFDTLRD-GFYDF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    A+   D    + ++ R  +          Q        +          I 
Sbjct: 209 VSNIPFYGVAVCCTDHPEVQALVGRITDRRVVTYGFNAQADV-RAVNLTYKAGVAHFDIH 267

Query: 295 VEGKDFD---FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++ +D        P+PG+  V NAL A  +   +G+ S+ + E L     V  RF  VG 
Sbjct: 268 LQAEDRVIEGCTLPMPGDHNVSNALSAVAVARHLGMKSSEIREALAAFGGVNRRFTKVG- 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  I  DY H    +  +LK  R    GR+I V      R      +          
Sbjct: 327 EVDGVTIIDDYGHHPVEITAVLKAARQACDGRVIAV--HQPHRYSRLSSLFEDFCACFNE 384

Query: 410 ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           AD+  + +     EDP +       +   I HG        +  +  R   E     D++
Sbjct: 385 ADVVAIAEVFAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDESDLERLVREQARPGDMV 444

Query: 463 VVAGKG 468
           V  G G
Sbjct: 445 VCLGAG 450


>gi|85703766|ref|ZP_01034870.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217]
 gi|85672694|gb|EAQ27551.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. 217]
          Length = 465

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 76/415 (18%), Positives = 133/415 (32%), Gaps = 47/415 (11%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE +V+SSA      +     +   P++        L            ++ +AV GT 
Sbjct: 70  GAEVVVISSAIKPGNPELDEARKRGLPVVRRAEMLAELMRL---------KSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++  + G+    I     I ++  + R+                      
Sbjct: 121 GKTTTTTLVAELLVKGGIDPTVI-NGGVIHAYGSNARMGQGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++    +         F   +P    A
Sbjct: 163 MVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGDFERLRQ-GFYDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--F 302
           +   D    + ++ R  +          Q     +                         
Sbjct: 219 VCCTDHPEVQALVGRITDRRVLTYGFNAQADVRAVNLTYEKGVAHFDVALQAEGRVIEGC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+ +  +   L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAVAVARHLGMKADEIRAALASFGGVNRRFTRVG-EVDGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    +  +L+  R  T+GR+I V      R      +          AD+  + +   
Sbjct: 338 GHHPVEIAAVLRAARQATTGRVIAV--HQPHRYTRLASLFDDFCGCFNEADVVAIAEVYA 395

Query: 421 RSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             EDP       + +   I HG        +  +  R   E     D++V  G G
Sbjct: 396 AGEDPIPGASRDDLVAGLIRHGHRHARAIRDEDDLERLVREQAGPGDMVVCLGAG 450


>gi|120609516|ref|YP_969194.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
 gi|166222947|sp|A1TKD2|MURC_ACIAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120587980|gb|ABM31420.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
          Length = 475

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 80/435 (18%), Positives = 140/435 (32%), Gaps = 61/435 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA+A+V S+A    +          I VV      L+           +
Sbjct: 56  GH--AAAHIE-GADAVVTSTAVQSDNPEVIAARERKIPVVPRAL-MLAELMRL------K 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +   +G   +F IG    ++S   + +L     I +    
Sbjct: 106 RGIAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIG--GRLNSAGANAKLGQGEYIVVEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH++ +        +    F
Sbjct: 164 SDASFLN--------------------LLPVMAVVTNIDADHMETYGHDFGRLKSAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    AI+  D+   +E++               +   +    V A   + +  + 
Sbjct: 204 LHRMPFYGTAILCTDNPAIREILPDVTCPVTSYGF--SEDAQVRAVDVRADAGRMRFRVQ 261

Query: 295 VEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D D +  L GE  V NAL A  + + + I    +L  L +   V  RF+  G
Sbjct: 262 RRNGVTLPDLDVVLNLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYG 321

Query: 351 ----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR------P 400
                      +  DY H    +   L   R    GR +V+        + +        
Sbjct: 322 ELPAQGGGTFTLIEDYGHHPVEMTATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVK 381

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAI 453
           +MG      AD  ++T+     E P        +   +   G    +   +  E  R   
Sbjct: 382 VMGS-----ADAVLLTEVYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIA 436

Query: 454 EMLNKQDVLVVAGKG 468
           +     DV++  G G
Sbjct: 437 DNARGGDVVLCMGAG 451


>gi|28210045|ref|NP_780989.1| cyanophycin synthetase [Clostridium tetani E88]
 gi|28202480|gb|AAO34926.1| cyanophycin synthetase [Clostridium tetani E88]
          Length = 874

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 10/160 (6%)

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           +    V   + I        +       + +PGRF     + +   I +DY H +     
Sbjct: 685 MAACAVGISMGINPIYIRKAMESFNLDENYIPGRFNI--YSFKDRTIILDYGHNAEGYNA 742

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRA 430
           ++K  + +   R+I V G  GDR+      +G+I     D   + +D + R+     +  
Sbjct: 743 VIKGAKKLKHNRLIGVIGAPGDRNDEHLIKLGEIGGKNFDYIYIKEDKHNRTRKKGDVAK 802

Query: 431 EIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +  GI                 +A++ AI+   K D++V
Sbjct: 803 LLKTGILNTGFNKDNIKIILKEEDALKEAIKYSKKGDLIV 842


>gi|254428710|ref|ZP_05042417.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
 gi|196194879|gb|EDX89838.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
          Length = 474

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 138/433 (31%), Gaps = 49/433 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G + D GH      I  GA+ +V S+A + ++          I VV    + L+      
Sbjct: 61  GVRVDIGHR--ASNID-GADVVVTSTAVNTENLEVAAAHERRIPVVPRA-QMLAELMRFR 116

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +G      +AV GT GK++  S    I   +G   +F IG    ++S   + RL      
Sbjct: 117 HG------IAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIG--GRLNSAGTNARLG----- 163

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                              +AS   L          ++   TN+  DH+  +    A   
Sbjct: 164 -------QSRYLVAEADESDASFLHLQ--------PMSAIVTNIDADHMHTYGGDFAQLE 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                F   LP    A++  DD   ++++ R +    R             + V      
Sbjct: 209 NTFIEFLHNLPFYGVAVMCVDDPVVRKLLPRVNRQVIRYGFSEDADL--RAENVRQDGMV 266

Query: 289 QQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               +     +  +    +PG   V NAL A  +    G D   ++  L     V  RF+
Sbjct: 267 THFRVVRAEGEPLEVSLNMPGRHNVLNALAAIAVSADEGADDEAIIRGLNNFTGVGRRFD 326

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIM 402
             G     G    +  DY H    +   +  IR     R + +        R Q      
Sbjct: 327 VQGEYHFEGGSATLVDDYGHHPREVAATIDAIREGWPERRLAMLFQPHRYTRTQDLYEDF 386

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            ++     D+ ++ +     EDP        +   +       +   +  +        L
Sbjct: 387 VEVLS-GVDVLLMLEVYAAGEDPIPGADARALCRSLRKRGLEPVFVDDPDKLAGLLASQL 445

Query: 457 NKQDVLVVAGKGH 469
              D+LV  G G+
Sbjct: 446 QDGDLLVTQGAGN 458


>gi|260587768|ref|ZP_05853681.1| tetrahydrofolate synthase [Blautia hansenii DSM 20583]
 gi|331083771|ref|ZP_08332880.1| hypothetical protein HMPREF0992_01804 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542033|gb|EEX22602.1| tetrahydrofolate synthase [Blautia hansenii DSM 20583]
 gi|330403196|gb|EGG82756.1| hypothetical protein HMPREF0992_01804 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 432

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIA 406
                S+   + +D AH   + E + K++     G+    VFG   D+D  K   + ++ 
Sbjct: 294 RFTVMSQNPLVILDGAHNPQAAEALRKSLELYFKGKKLYYVFGVFQDKDYKK---IIELT 350

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             LA+  I   T DNPR+   E+++ ++           +   AI   +  +  +DVLVV
Sbjct: 351 APLAEHIITVETPDNPRALPAEELKKQVEKINASVETGESIEAAIEKNLSYMGAEDVLVV 410

Query: 465 AG 466
            G
Sbjct: 411 FG 412


>gi|187932212|ref|YP_001892197.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229620042|sp|B2SE51|MURC_FRATM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187713121|gb|ACD31418.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 451

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 93/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +              + +     I       I  +G D  F   LPG + V NA      
Sbjct: 229 SDKNVTSYGFSIDADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQNATACIIA 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I+
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALSLADQLILLPTYSADEQIIKGAESQDIV 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++       AI    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHAIYFLEKLANENTVILIQGAG 440


>gi|4406514|gb|AAD20011.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Streptomyces coelicolor A3(2)]
          Length = 142

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
             EL +QL +        +I  ++ DSR ++ G ++ A+ G +  G  F+ Q
Sbjct: 62  LAELADQLGVAAPDGS-AEITGITHDSRAVRPGDLYAALPGARLHGADFVTQ 112


>gi|83814772|ref|YP_444701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           DSM 13855]
 gi|122063258|sp|Q2S530|MURD_SALRD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83756166|gb|ABC44279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           DSM 13855]
          Length = 460

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 133/430 (30%), Gaps = 62/430 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPIL---------VVDNTRKF----LSL 104
             A + GA A +  +    +     +  + ++  +L         +V    +      S 
Sbjct: 39  QDAPSDGAAAALDEAGVEYEFGGHTAEALDADVLVLSPGVPTQSNIVQQALRAGLDVYSE 98

Query: 105 F--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS--GLSSFQIGPTSTISSFAQDN 160
              AS         I    G +  +S+   V +       G  +   G            
Sbjct: 99  IEAASWFCDAPIVAITGTNGKTTTTSLTGHVFRTAFADTLGREAIVAGNIGYP------- 151

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDY 219
                       +   L ++    V +E SS  LD   ++  +       N+  DH   Y
Sbjct: 152 -----------FSDYVLETEPTDVVVLEVSSFQLD--HVETFRPRVSVLLNITPDHLGRY 198

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               +AY  AK  +F      +       DD       + A   G R +++  +G     
Sbjct: 199 DHDFEAYAQAKHNIFRNQGEGDVVVYNRDDDDVRNAAEEAAAEQGVRPMAITREGVPAAG 258

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                     +     +         L G   +YN+L AA     + +++ ++ E L   
Sbjct: 259 AGFRDGRIVLRTDDEDDSLMPQDELALRGRHNMYNSLAAAVSARVMEVENDVIRESLSGF 318

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VP R E V T      +    A   N++   L++       R IV+    G RD+G  
Sbjct: 319 EGVPHRLEEVHTVDDVLYVNDSKATNVNAVWYALESFD-----RPIVLIA--GGRDKG-- 369

Query: 400 PIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                   D  D+  +  D  R      E  EK+  E+    P         +A+  A  
Sbjct: 370 -------NDYTDLKPLVRDQVRAVVALGESAEKVERELGGEAPDHSRAETMEDALTQAQR 422

Query: 455 MLNKQDVLVV 464
                DV+++
Sbjct: 423 AAQPGDVVLL 432


>gi|309379069|emb|CBX22371.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 480

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 135/425 (31%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +    A +    P++     R   L+       G      +A+ G
Sbjct: 75  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALMLAELMRFRDG------IAIAG 124

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 125 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 182

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 183 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 222

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D  + + ++ +                  +   +  +  + + T+ V+ K  +
Sbjct: 223 GKAFLCIDSEHVRAILPKVSKPYATYGLDDTADI--YATDIENVGAQMKFTVHVQMKGHE 280

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 281 QESFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 340

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 341 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 399

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +     + +L   D+++
Sbjct: 400 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 459

Query: 464 VAGKG 468
             G G
Sbjct: 460 NMGAG 464


>gi|88799425|ref|ZP_01115002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
 gi|88777735|gb|EAR08933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
          Length = 463

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 126/397 (31%), Gaps = 49/397 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+S    L D +     +  + +  +   FLS             ++A+TG++ KS
Sbjct: 88  ADVLVMSPGVPLADPAIKKALDQGVQLSSDIELFLSE--------FNGKVIAITGSNAKS 139

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V +++ +  +  G  +   G                                      +
Sbjct: 140 TVTAWLGEALKAGGQKTLVAGNIGIPVL--------------------ETDHAAYDVAVL 179

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   L  +        N+  DH+D ++T   Y  AK +++          +  
Sbjct: 180 ELSSFQLEL--LSRVNADIACVLNISEDHMDRYETLAHYVQAKQKIYFGAAS----VLYN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             DA ++ ++                  +   K+       Q   + +   +      LP
Sbjct: 234 RSDALTQPLVPDHVLKRTFASDAPDLNHYGLRKQDGNEWLAQGFDLVLPVSEV----ALP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL    L    G D +  L  L     +P R + +   +    I    A    
Sbjct: 290 GGHNVMNALAVLALADMAGNDRSATLTALTSFSGLPYRCQAIRERAGITFINDSKATNVG 349

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L+ + ++  G  I +   G  +DQ   P+  ++             +        
Sbjct: 350 STTAALEGLVSVR-GANIHLLAGGQAKDQDLSPL-AEVIEQTCKQVYAFGQD-------- 399

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            R + +      +E     EA   A     + D++++
Sbjct: 400 -RQQFLALTDRAVECETLSEAFAKANANAQEGDIVLL 435


>gi|293402021|ref|ZP_06646160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304413|gb|EFE45663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 438

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 124/361 (34%), Gaps = 47/361 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
               R       +  A+TGT+GK+++ + + ++ QR G ++   G      S        
Sbjct: 94  EIGYRYASHF--HYGAITGTNGKTTITTMLYEMLQRKG-NAIVAGNIGFPLSAL------ 144

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                      +Y   +   +V++E S+  L                NL  DH+DY  + 
Sbjct: 145 -----------AYDFEEEEKYVALELSNFQLLGIETFA--PEVSVVCNLAPDHLDYMPSV 191

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY+ +KMR++E    ++   +   DD       K         +        +  + V 
Sbjct: 192 EAYYESKMRIYENCQKEDWF-LRNVDDPTVVAYAK--------NIPCTTIDFSLTRQDVD 242

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 +V +       +  FP+ G++ + NA+VAA +   +G+  A +   +     V 
Sbjct: 243 LYRKDGKVWLHDLMLFEESRFPIVGDYNLSNAMVAACMAYKLGVSLADIQATISSFQPVE 302

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E++G            A  ++++   L +       + I++   G D+      +  
Sbjct: 303 HRLEYIGEKDGVKFYNDSKATNTHAVTAALSSFD-----KNILLLAGGHDKGISFLDL-- 355

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  D               + R +               EA+ TAI      D+++
Sbjct: 356 ---KQYDDRVKCCI------AFGETREQFKPIFTHVETVETMQEALHTAIAKAQSGDIIL 406

Query: 464 V 464
           +
Sbjct: 407 L 407


>gi|302518529|ref|ZP_07270871.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
 gi|302427424|gb|EFK99239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
          Length = 474

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 125/374 (33%), Gaps = 46/374 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +G  +  +G               
Sbjct: 102 ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------ 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 ++   + L+ +    ++VE SS+ L       ++  + +  NL  DH+D+H + 
Sbjct: 150 ------VSLLDAVLAEEPYDVLAVELSSYQLHW--APSVRPHSAAVLNLAPDHLDWHGSM 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  A  +       + +     AD A  + V       GCR +             V 
Sbjct: 202 AAY--AADKGRVYEGNQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVV 259

Query: 284 AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +   +  +    +             P    + NAL AA L  A G+ +  V E L  
Sbjct: 260 EGYLVDRAFVPDRAQQAQELAEVADVDPPAPHNIANALAAAALARAFGVPATAVREGLRA 319

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R E V T      +    A  +++ E  L     I       V+  GG      
Sbjct: 320 FRPDPHRIEHVATIDGVAYVDDSKATNTHAAEASLAAYEPI-------VWIAGGLAKGAS 372

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRI------EAIRT 451
              + + A       ++        D   IR  +    P       +R       EA+R 
Sbjct: 373 FDELVQGAAKRLRAVVL-----MGRDRALIREALARHAPNVPVVDLDRADTGAMSEAVRE 427

Query: 452 AIEMLNKQDVLVVA 465
           A  +    D +++A
Sbjct: 428 AAGLAESGDTVLLA 441


>gi|160945307|ref|ZP_02092533.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443038|gb|EDP20043.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
          Length = 467

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 105/356 (29%), Gaps = 29/356 (8%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGA---------------- 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
             A               VE SS  L               TN+  +H+D+H+  Q Y N
Sbjct: 157 --ALLPMLPEVSPEDVAVVELSSFQLIS---MHASPNIAVVTNVTPNHLDHHKDMQEYIN 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A  R       +   A++  ++  S+ +             +        L+K   +   
Sbjct: 212 A-KRNILLYQKQPCRAVLGYENEISRSMQADCKGKQVWFTRLHDTDNGAFLRKEDGMLCM 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +         +            L+AA   +   +    + +       V  R E 
Sbjct: 271 AEDGVVTPFLAQKDVK--LRGLHNIENLLAAAAAVWGEVPVEAIRQVGSTFTGVEHRIEP 328

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T             +       L++       R +++   G D+     P+  +I   
Sbjct: 329 VRTLDGVLYYNDSIGTSPTRTIAGLRSFD-----RKVILIAGGYDKHIPYEPLAPEIIAH 383

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++ ++    PR E   +  +             N   A+  A       D++++
Sbjct: 384 VKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDIIIL 439


>gi|119489853|ref|ZP_01622608.1| Cyanophycin synthetase [Lyngbya sp. PCC 8106]
 gi|119454281|gb|EAW35432.1| Cyanophycin synthetase [Lyngbya sp. PCC 8106]
          Length = 605

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       +DYAH   S E +   +R    G  I V G  GDR      
Sbjct: 431 QTPGRMNL--FNMGKYHALIDYAHNPASYEALAGFVRN-WEGVRIGVVGGPGDRRDEDFV 487

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFI-----------EKGNRIEA 448
            +GK+A ++ D  ++  DD+ R  +       I  GI   +              N  EA
Sbjct: 488 TLGKLAAEMFDQIVIKEDDDTRGRERGNGADLIREGIEQVLSRVPDPRVSHETILNETEA 547

Query: 449 IRTAIEMLNKQDVLVVA 465
           I T ++      ++V+ 
Sbjct: 548 IETTLDRAPNGGLVVIL 564


>gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
 gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
          Length = 445

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 141/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGCVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
               +    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGCLKQGDEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   + 
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALK 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 DK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYTQAEAGDIVLL 418


>gi|197124214|ref|YP_002136165.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
 gi|196174063|gb|ACG75036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
          Length = 462

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 129/404 (31%), Gaps = 46/404 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V S    L +          + V           A+R     P  I+ +TGT+GK
Sbjct: 70  GADLVVASPGVPLANPEIQAARRRGVAVWGEV-----ELAARFLDGLP--IVGITGTNGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+  +    +       +F  G   T  S      + +  P   A               
Sbjct: 123 STTTALTGALL-ARDRRTFVGGNLGTPLSEL----VLSGEPADAA--------------V 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS  L+   ++  +    +  N+  DH+D +    AY  AK RLF      +  A+ 
Sbjct: 164 VELSSFQLE--GIERFRARVAAVLNVTPDHLDRYPDVDAYAAAKARLFAT-QQPDDVAVA 220

Query: 247 YADDAYSKEVM----KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A D  +  +        H  G    +                            +    
Sbjct: 221 NARDPRALAMAGASRADLHTFGFGAPAPASARDEGGEPGPEGTAIWFTPRGRAPERYQLR 280

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G     NA+ A      +G+    V   L+    +  R E V        +    
Sbjct: 281 NRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHHRLELVAEGRGVEWVNDSK 340

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNP 420
           A   +S  + L    +  + R++++ G  G +      RP+ G         A++T    
Sbjct: 341 ATNVDSTFVGLAAFPS-GAPRVVLIMGGRGKKAPYAPLRPLFGGRV-----KALLTI--- 391

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ED   I  E +  +      G+   A+R A  +    DV+++
Sbjct: 392 -GEDAPAIERE-LGDLAPTEPCGDLAGAVRRAAVLSGPGDVVLL 433


>gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
          Length = 443

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/398 (14%), Positives = 128/398 (32%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I+VS   ++         +  I V+ +         +R   +    ++ +TG++GKS
Sbjct: 67  ATQIIVSPGIAIDTPEIRAAIDMDIEVIGDV-----ELFARAVKERDACVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G           +       I L                +
Sbjct: 122 TVTTLVAEMAKAAGINYAVGGNIGIPVLDLLQSD------IEL--------------YVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  I+ +  N+  DH+D +   +AY  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCISATCLNISEDHMDRYSDIEAYRQAKLRLYSQ----------- 208

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                   +  R          +      + L         +   +    +         
Sbjct: 209 ----TRFALFNREDELTKPKDPMNQNSFGLSLPDNDEWGVCEGKIVHGSVEVISLQDVAL 264

Query: 308 GEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                +  L  A  L    GI+ A ++E       +  RFE V   +    I    A   
Sbjct: 265 VGSHNHANLIAAMALAYQAGIEKAAMVEVASSFTGLEHRFEMVVNRNGVAYINDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    ++ I        I++   G  +    +P++  +   ++ +  +  D        
Sbjct: 325 GATVAAIEGISEHLGD--IILIAGGDGKGADFKPLVP-VLKAVSHLITLGKDG------- 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +I       I   +  +A+  A ++    D++++
Sbjct: 375 ---DKIAALSDSSIRVDSMADAVNKAAQLAIAGDIVLL 409


>gi|327538738|gb|EGF25388.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodopirellula baltica WH47]
          Length = 660

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 66/488 (13%), Positives = 127/488 (26%), Gaps = 70/488 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF----------IPQAIAQGAEAIVV 73
              + +   ++  +   Q G + V           +          I QA+A+GA  I+ 
Sbjct: 124 SGSDIEFTSIAQSAETCQPGQLVV-----------YRLGDDCPVELISQALARGAAGILT 172

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                            P  +V +T + L+   S    +  + ++ +          +  
Sbjct: 173 EQILPAP---------IPQAIVADTDRALAEIRSNQTDRPDQKLITIGIVGSAGKTITSF 223

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI---YLAKALSYLSSQGVTHVSVEAS 190
                   +       T   SS +      T        L  ALS     G      E  
Sbjct: 224 LTASVLRDIPCRVAYQTDLGSSDSVVTEAGTAKVTNGASLIDALSDAVDAGAAVSITEMD 283

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L     D I+L     T       D+  +                            
Sbjct: 284 SAQLRLGAYDQIELDIVVVTGRDMGGNDFGPSPIECAFELAGQGG-----VLIVPESDQR 338

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A S             V      G  + ++ +          +  E +       L    
Sbjct: 339 AVSAAHTAAQSQNIEVVTYGVDNGADVSIRTISLEDGTLTAMLRHESRAAVMESFLGRGH 398

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-----FVGTNSRGGRIYVDYAHT 365
                  AA + +        + E L KL  +PGRFE        T+     + +D   +
Sbjct: 399 FAECLAAAAAVGVVTENPLPQIAESLCKLRELPGRFEAITSGDWETDQNNPIVRLDIGGS 458

Query: 366 SNSLEMILKNIRT------------------------ITSGRIIVVFGCGGDRDQGKRPI 401
              ++  L+  R                             ++  V     + D      
Sbjct: 459 PERVKFALQAARKELLQTPASTAPMTLPMHGSSSVNNTKRPKLWCVLSVSENDDAETLVQ 518

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLNK 458
            G++   + D  ++T  +    +   +   ++ GI          +   AI+ A    + 
Sbjct: 519 YGRLLESMPDHCVLTCADKDKANFLSMSHGVLDGIQDVAAMRLVADSSRAIQWAHAEASN 578

Query: 459 QDVLVVAG 466
            D+++V G
Sbjct: 579 NDMILVVG 586


>gi|254805548|ref|YP_003083769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
 gi|254669090|emb|CBA07647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
          Length = 445

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 124/361 (34%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R  
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG 158

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                           +      +E SS  L+    + ++  A +  N+  DH+D +   
Sbjct: 159 ----------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDL 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y + K ++F     +   A     D      MKRA               +       
Sbjct: 201 LDYAHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW------- 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 ++    E        PL G     N + A  LC AIG+    +LEH++    +P
Sbjct: 249 LARETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAIGLSRNELLEHVKTFQGLP 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E +G  +    I         +    +  ++       + V   G  + Q   P+  
Sbjct: 309 HRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQ-----NPLFVILGGMGKGQDFTPLRD 363

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +A   A    +        D  +IR ++        +     EA++ A       D+++
Sbjct: 364 ALAGK-AKGVFLI-----GIDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|229019116|ref|ZP_04175950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
 gi|229025359|ref|ZP_04181777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228735944|gb|EEL86521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228742132|gb|EEL92298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
          Length = 450

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 127/405 (31%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLAFEMLKEGKKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVEMFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +  ++        +        ++K+              E     
Sbjct: 219 YSVI-NADDADVMTLSAQSKGQKVLFSTTKEIEDGAYIKENALY-------FKGEKVAEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L+    V  R E+V T +        
Sbjct: 271 SDIVLPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           IV+   G DR      ++             IVT   
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLI-----PYFKHVKAIVTFGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +RA    G+          EA+  A       DV+++
Sbjct: 381 TA---PKLVRAAEKAGLDVIESVDTLGEAVVKAYAHSTDGDVILL 422


>gi|254391590|ref|ZP_05006789.1| hypothetical protein SSCG_03965 [Streptomyces clavuligerus ATCC
           27064]
 gi|197705276|gb|EDY51088.1| hypothetical protein SSCG_03965 [Streptomyces clavuligerus ATCC
           27064]
          Length = 68

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
              D +++AGKGHE    +  G  +   D  ++RE + 
Sbjct: 20  EPGDTVLIAGKGHEQGQDIA-GVVRPFDDRQVLREAIR 56


>gi|121635446|ref|YP_975691.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis FAM18]
 gi|158513150|sp|A1KVL5|MURD_NEIMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120867152|emb|CAM10919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis FAM18]
          Length = 445

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 143/418 (34%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNA-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATKDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGKKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|294338819|emb|CAZ87153.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Thiomonas
           sp. 3As]
          Length = 469

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 90/444 (20%), Positives = 141/444 (31%), Gaps = 67/444 (15%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLF 105
           VAI      GH     A  Q A+A+VVS+A    +          I VV   R   L+  
Sbjct: 53  VAI------GHD---AAQVQDADALVVSTAVRADNPEVLAARARHIPVVP--RAVMLAEL 101

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
                    +  +A+ GT GK++  S V  +    G   +F IG    ++S   + +L  
Sbjct: 102 MRL------KRGIAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGVNAKLGQ 153

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              I +    S  S                       +  +    TN+  DH+D +    
Sbjct: 154 GEYIVVEADESDASFLN--------------------LLPVMAVVTNIDADHMDTYGHDP 193

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A        F   LP    A++  DDA  + +M     +         +   +    V A
Sbjct: 194 ARLRHAFVDFIARLPFYGAAVLCVDDAAVRGIM--PFVSKPITSYGFAEDAQVRAIDVRA 251

Query: 285 IHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              +   T+                LPG   V NAL A  +   + +D A +   L    
Sbjct: 252 EGAQMHFTVLRRNGVQLPPLAVTLNLPGRHNVQNALAAIAVATELNVDDAAIQRALAGFT 311

Query: 341 VVPGRFEFVG----TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            V  RF+  G     +     +  DY H    +   L   R    GR  +V      R  
Sbjct: 312 GVGRRFQRYGEVAAHHGGHFTLIDDYGHHPVEMAATLAAARGAFPGRR-LVLAFQPHRYT 370

Query: 397 GKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGN 444
             R +       L  AD  ++ +     E P        +   +               +
Sbjct: 371 RTRDLFEDFVKVLGEADAVLLAEVYSAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVAD 430

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
             +AI   +EM  + DVL+  G G
Sbjct: 431 LPQAI---LEMAREGDVLICMGAG 451


>gi|291567673|dbj|BAI89945.1| cyanophycin synthetase [Arthrospira platensis NIES-39]
          Length = 895

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       +DYAH   S E +   +     G  I V G  GDR      
Sbjct: 727 QTPGRMNL--FNMGSYHALIDYAHNPASYEALSGFVNN-WPGPRIGVVGGPGDRRDEDFV 783

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIP-----------GFIEKGNRIEA 448
            +GK++  + D  IV  DD+ R   P      I  GI             +    N  +A
Sbjct: 784 TLGKLSAKMFDRIIVKEDDDTRGRPPGDAAVLITQGIEEVLSPVRDPRVKYETVLNETDA 843

Query: 449 IRTAIEMLNKQDVLVVA 465
           I  A+E   K+ ++V+ 
Sbjct: 844 INMALEQAPKESLVVIL 860


>gi|284051570|ref|ZP_06381780.1| cyanophycin synthetase [Arthrospira platensis str. Paraca]
          Length = 871

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       +DYAH   S E +   +     G  I V G  GDR      
Sbjct: 703 QTPGRMNL--FNMGSYHALIDYAHNPASYEALSGFVNN-WPGPRIGVVGGPGDRRDEDFV 759

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIP-----------GFIEKGNRIEA 448
            +GK++  + D  IV  DD+ R   P      I  GI             +    N  +A
Sbjct: 760 TLGKLSAKMFDRIIVKEDDDTRGRPPGDAAVLITQGIEEVLSPVRDPRVKYETVLNETDA 819

Query: 449 IRTAIEMLNKQDVLVVA 465
           I  A+E   K+ ++V+ 
Sbjct: 820 INMALEQAPKESLVVIL 836


>gi|160937437|ref|ZP_02084798.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439506|gb|EDP17256.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
          Length = 472

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 132/424 (31%), Gaps = 47/424 (11%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G   +V ++A      +F A      P+L   +  + L            +  +A++GT 
Sbjct: 82  GISVVVYTAAIHEDNPEFRAARDQGLPML---SRAELLGELMRNY-----KEAIAISGTH 133

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I   +G     I     +     + R+  P             ++   +
Sbjct: 134 GKTTTTSMLTDIL-LAGDLDPTISVGGILKDIGGNIRVGGPD---------LFVTEACEY 183

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
            +   S                    N+  DH+D+ +  +   ++  RLF E LP +   
Sbjct: 184 TNSFLS-----------FYPTMEVILNVEEDHLDFFKDIEDIRHS-FRLFAEKLPAKGLL 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ +     +E+ +                                  +           
Sbjct: 232 VVNSGIEKVEEITRGLRCRVVTFGKDLSSTYTARNITYDGFARPSYDLVVQGETVTRITL 291

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + GE  VYN+L A  + + +G+    ++  L +      RFE  G    G  +  DYAH
Sbjct: 292 GVTGEHNVYNSLAAIAIALELGVGFDAIMSGLGRFTGTDRRFEKKG-EVAGVTVIDDYAH 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L   R     ++  VF      R +       +     AD  ++ D     E
Sbjct: 351 HPQEIKATLAAARNYPHRKLWCVFQPHTYTRTRAFLDQFAEALSA-ADEVVLADIYAARE 409

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKGHETVHIVT 476
                     +   I           +  E I T  +E     D+L+  G G     IV 
Sbjct: 410 TDTLGVSSRDVADRIEKLGTKAHYIPSFDE-IETFILENCMNGDLLITMGAGD----IVK 464

Query: 477 NGEK 480
            GEK
Sbjct: 465 VGEK 468


>gi|313904465|ref|ZP_07837842.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
 gi|313470801|gb|EFR66126.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
          Length = 462

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 125/399 (31%), Gaps = 39/399 (9%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           S  +++A +  N P+L    TR   +     +   +   I         ++ +     + 
Sbjct: 82  SNPEYAAAVEKNIPLL----TR---AQLLGEMMKSYKIPICVSGTHGKTTTTSMASHVLM 134

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                 +  +G    +         T    +   +  +                      
Sbjct: 135 AADKNPTISVGGILPLIKGNYHIGNTDTFLMEACEYTNSFLDF----------------- 177

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                        ++  DH+D+ +  +   N+  R F ELLP +   II ADD   K + 
Sbjct: 178 -----FPKISIILDIDADHLDFFKDLEDIRNS-FRKFAELLPADGTLIINADDPAFKMIT 231

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K                    +     + +     +       +F   +PG   V NAL 
Sbjct: 232 KDLPCEVITYSLSNIGNYTADMITYDELGHASFRALYKGEPIGNFALQVPGSHNVSNALA 291

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              L   +GID+  + +  +  H    RFE  G    G  +  DYAH    ++  L   R
Sbjct: 292 VIALAEKLGIDADTIQKGFDSFHGTNRRFEQKG-EMNGATVIDDYAHHPTEIKATLNTAR 350

Query: 378 TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRA 430
            +    I  VF      R +   P   + AL +AD  ++ D     E        + ++ 
Sbjct: 351 RVPHKTIWCVFQPHTYTRTKSLLPQFAE-ALSIADHVVLADIYAARELDIYGISSKDLQN 409

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           EII          +  E        + + D+L+  G G+
Sbjct: 410 EIIKLGTDCDYFPSFAEIEAYLRANVKEGDLLITMGAGN 448


>gi|78356090|ref|YP_387539.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|109892703|sp|Q313Q2|MURC_DESDG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78218495|gb|ABB37844.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 454

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 83/439 (18%), Positives = 140/439 (31%), Gaps = 63/439 (14%)

Query: 44  WIFVAIVGNKEDGHLFIPQA---IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100
            IF+        G   +  A   +   A       +    +  A      PI+     R 
Sbjct: 52  DIFIG------HGAENVTDAQVLVKSTAV------SMDNPEVQAAQEKGIPII----PRA 95

Query: 101 F-LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             L+       G      +A+ GT GK++  S    I   +G     I     ++++  +
Sbjct: 96  EMLAELMRLRKG------IAIAGTHGKTTTTSLTAAIFDEAGTDPTVI-IGGRLNAYGSN 148

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            RL     +      S                          +  +    TN+  DH+D+
Sbjct: 149 ARLGEGEFLLAEADESD--------------------GSFLCLSPVVNVVTNVDLDHVDF 188

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           +  QQA   A +    ++       +   DDA  + ++ +                 +  
Sbjct: 189 YHDQQAIDTAFINFMNKVPFYGMNVV-CGDDAGVRRLLPQIKRPVLTYGFG--PDNQLRA 245

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           + V      +   +       +     PG   V NAL A G+ +  GI + + L  L   
Sbjct: 246 ETVTCGETSRFRVLLHGEDLGEVNLVQPGRHNVLNALAAIGVGLETGIAADVCLRGLANF 305

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  RFE  G    G  +  DY H    +   L   RT   GR +VV        + K 
Sbjct: 306 RGVGRRFERKG-ERGGVLVVDDYGHHPAEIAATLATARTCYPGRRLVVAFQPHRFSRTK- 363

Query: 400 PIMGKI--ALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIR 450
            + G    A D  D  ++T+  P SE P      + +   I            +  +A+R
Sbjct: 364 ALFGDFCKAFDNVDKLLLTEIYPASEAPIPGVSGQSLAQGIRQVSNTDVDYFQD-FDAMR 422

Query: 451 TAI-EMLNKQDVLVVAGKG 468
            A+ E L   D+ +  G G
Sbjct: 423 AALPETLRPGDLFLTLGAG 441


>gi|116750889|ref|YP_847576.1| UDP-N-acetylmuramate--alanine ligase [Syntrophobacter fumaroxidans
           MPOB]
 gi|166224744|sp|A0LNY9|MURC_SYNFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116699953|gb|ABK19141.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 469

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 103/279 (36%), Gaps = 17/279 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D+++   A+       F   +P    A++  +D   + ++ R  
Sbjct: 172 LPPTIAVVTNIDLEHLDFYRDL-AHIQETFLQFINKIPFYGQAVLCLEDENIQSILPRVE 230

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
                             + V          +   G +  +    +PG   V N+L A  
Sbjct: 231 KRFTTYGFSSQADF--QARDVRTSGLFSSYRVHSHGDELGEIEIRIPGRHNVLNSLAAVA 288

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
           +   + +D A + + L  +  V  RF+  G  +    +  DY H  + +  +L+ +    
Sbjct: 289 VARELDLDWANIQDGLRDMTGVQRRFQIKG-EAANVLVIDDYGHHPSEIRAVLQTLADCY 347

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP------EKIRAE 431
              R IVVF     R    R +M + A     +D+ +VT+    SE P      E++  E
Sbjct: 348 PDRRRIVVF--QPHRYTRTRALMEQFARCFYHSDVLLVTEIYAASETPIPGVTGERLSQE 405

Query: 432 IIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I   G            A+   ++++   D ++  G G+
Sbjct: 406 IASHGHHDLHFCETVESALSRLVKLVKPGDAVITLGAGN 444


>gi|20094483|ref|NP_614330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus
           kandleri AV19]
 gi|19887585|gb|AAM02260.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanopyrus
           kandleri AV19]
          Length = 470

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 135/410 (32%), Gaps = 44/410 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPI-LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A+A  VS A         +    P  + V++    L           P   + +TGT+GK
Sbjct: 69  ADAAFVSPAIPEDAEGRKLAELVPEEITVEDVAGLLGDL-------FPVPAIGITGTNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    V  + +  G   ++             +R      I        +    V  V 
Sbjct: 122 TTTTWAVAHLLEACGYEVWRCSSL---------DRHLVIEAIVDGVVTGEIEGYDVAVVE 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +   +  L      GI+L  G  TN+  +H+     +      +    +  + + S  ++
Sbjct: 173 LPHGTIRLA----AGIELDVGVLTNVSPEHL----DEFGGSFERYVRRKLTITEMSEVLV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D   +E+ KR ++A    +       +   +    +      ++  +          
Sbjct: 225 AGYD--CEELRKRLNDAVWYSVRDPDADYYGRRENGRLVVKGPDASVEADF--------H 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
              + V N   A   C+  G D   V E L     VPGR E +G    G   Y+D AH  
Sbjct: 275 LIGYYVENCTGAVAACLEFGADPEGVAEGLATFEGVPGRMELLG-EFSGRVAYIDAAHNP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRP--IMGKIALDLADIAIVTDDNPRSE 423
           + L+  L   R +   R   +     + D   +R     G+I  + AD    +  N   E
Sbjct: 334 DGLKASLPPFRELADERGGRLLVSVDNPDTVTERDKFEFGRIVGEYADFVAASGYNETLE 393

Query: 424 DPE-KIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +     E++ G        +   +  EA         + DVL+  G G
Sbjct: 394 RLDRSAAEEVVKGAESAGCEGVAVDSVREAAEEVAARSEEGDVLLHVGPG 443


>gi|333027791|ref|ZP_08455855.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
 gi|332747643|gb|EGJ78084.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
          Length = 454

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 125/374 (33%), Gaps = 46/374 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +G  +  +G               
Sbjct: 82  ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGHRTAAVGNIG------------ 129

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 ++   + L+ +    ++VE SS+ L       ++  + +  NL  DH+D+H + 
Sbjct: 130 ------VSLLDAVLAEEPYDVLAVELSSYQLHW--APSVRPHSAAVLNLAPDHLDWHGSM 181

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  A  +       + +     AD A  + V       GCR +             V 
Sbjct: 182 AAY--AADKGRVYEGNQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVV 239

Query: 284 AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +   +  +    +             P    V NAL AA L  A G+ +  V E L  
Sbjct: 240 EGYLVDRAFVPDRAQQAQELAEVADVDPPAPHNVANALAAAALARAFGVPATAVREGLRA 299

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R E V T      +    A  +++ E  L     I       V+  GG      
Sbjct: 300 FRPDPHRIEHVATIDGVSYVDDSKATNTHAAEASLAAYEPI-------VWIAGGLAKGAS 352

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRI------EAIRT 451
              + + A       ++        D   IR  +    P       +R       EA+R 
Sbjct: 353 FDELVQGAAKRLRAVVL-----MGRDRALIREALARHAPNVPVVDLDRADTGAMSEAVRE 407

Query: 452 AIEMLNKQDVLVVA 465
           A  +    D +++A
Sbjct: 408 AAGLAESGDTVLLA 421


>gi|304383924|ref|ZP_07366381.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
 gi|304335002|gb|EFM01275.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
          Length = 443

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 122/401 (30%), Gaps = 44/401 (10%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  GAE ++ S     +        +  I ++         FA R        ++ +TG+
Sbjct: 60  ILNGAE-VIKSPGIPKEAPMVRKIIDKSIPIISEI-----EFAGRYTH---AKMVCITGS 110

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++  S +  I + +G      G                   + L       +     
Sbjct: 111 NGKTTTTSLIYHIFREAGYDVGLAGNIGN--------------SLALQV-----AEDPHA 151

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS  LD   +   +       N+  DH+D +      +        +   +E  
Sbjct: 152 FYIIELSSFQLDD--MFDFRANIAILLNITPDHLDRYDHCMQNYVNAKMRILQNQTEEDS 209

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I + DD   K  +++      +      +            +  ++ T           
Sbjct: 210 FIFWNDDPIIKRELQKYDIKAMQYPFSELKENGSIGYIEEGRYTLEEPT---PFNMEQEE 266

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   +YN+L A       GI   ++ + L     V  R E V        I    A
Sbjct: 267 LSLTGRHNIYNSLAAGIAGSIAGIKKDVIRKSLSDFPGVEHRLEKVVKVGGVQYINDSKA 326

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++    L ++RT       ++   G D+     PI   +      +  +  DN +  
Sbjct: 327 TNVDACWYALDSMRT-----PTILIIGGKDKGNDYEPIKALVKEKCVGLVYLGADNSKLH 381

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D          GIP   +  +  E +     M    D +++
Sbjct: 382 DNFDHL-----GIP-VRDTHSMKECMEACYAMARPGDTVLL 416


>gi|258514343|ref|YP_003190565.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778048|gb|ACV61942.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 458

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 140/412 (33%), Gaps = 43/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE IV+SSA    +      +    P++             +R+  +     +A+ G  G
Sbjct: 65  AELIVISSAIPSNNPEWQFALHKGVPVIHR-------GEMLARMMDRQ--TGIAIAGAHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +     ++ L    +     ++    + +L                     + 
Sbjct: 116 KTTTTSMIALTLVKNNLDPTVL-IGGELTDIGGNAKLG--------------------YG 154

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +           ++      TN+  DH+DY++T++    A    F   +P +  A+
Sbjct: 155 QYLVAEADESDGSFLLLRPNIIVVTNIENDHLDYYKTEEKITEA-FSKFIRKIPSDGMAV 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   K +  +                +     +      +                
Sbjct: 214 LCTDDRQLKHMSTQLKRPCKTYSVKSTDADYTIRNMITDGPKSKVEVYENGTLLGILELL 273

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL    +   IG+D   + E L        RF+ +G      ++  DYAH 
Sbjct: 274 VPGLHNISNALAVVAVGRHIGLDFDKIAEALSTFKGAQRRFQLIGIEKE-VQVVDDYAHH 332

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            + +   LK  R   +GRII VF      R Q      G+   D AD+ IV+D     E 
Sbjct: 333 PSEIRATLKAARQAHAGRIIAVFQPHRYSRTQHLYEQFGEAFGD-ADVVIVSDIYSAGEK 391

Query: 425 PEK------IRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
           P +      I A +       +     IE I   +E ++   D+++  G G+
Sbjct: 392 PIEGVHAGLIVAAVQKNTGREVIYQPGIEQITDCLETIVKHGDLVLTMGAGN 443


>gi|303232778|ref|ZP_07319463.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae
           PB189-T1-4]
 gi|302481264|gb|EFL44339.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae
           PB189-T1-4]
          Length = 503

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 120/410 (29%), Gaps = 43/410 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VVSSA    +          I +     K LS  +           +AV GT GK++ 
Sbjct: 110 VVVVSSAILQTNPELVYAKEHGIAIWPRA-KMLSYLS------LHAKTIAVAGTHGKTTT 162

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  +    G                 D        +   K               + 
Sbjct: 163 SSMIATMLDHMGD----------------DPSFLIGGIVEEYKTNGRSGKSDYFVCEADE 206

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S           +       TN+  DH+D+++T            + +    +  I   D
Sbjct: 207 SD-----GSFMYLNPHVAVITNIEADHLDHYKTFDNLTRTFAAFMDLVGSDGTVVI-CGD 260

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPG 308
           +   + + + +                  L                 G++        PG
Sbjct: 261 NPTCRALAQASSRHVVTYGFDATCDYVCTLGANTHTITNSFQVRCPSGEELAITLTANPG 320

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                NA  A     A+G+D     + L        RF  +G       +  DY H    
Sbjct: 321 THNALNATAAIAAAGALGLDVYAAAKALCTFKGAHRRFTHMG-TWNDICVVDDYGHHPTE 379

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP- 425
           ++  L   + +   RI+ VF     R    + +M + A     AD+ IVTD     E P 
Sbjct: 380 IKATLAAAKNLQFKRIVCVF--QPHRYTRTQALMNEFADAFVDADVVIVTDVFSAGETPI 437

Query: 426 -----EKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                + +   I    P  I      +   +   IE+L   D+L+  G G
Sbjct: 438 PGVTGQHVAQLIAKRHPSCITESIPQKKAVVNRLIELLQPGDLLITQGAG 487


>gi|254491357|ref|ZP_05104537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxidans DMS010]
 gi|224463486|gb|EEF79755.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxydans DMS010]
          Length = 413

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 129/397 (32%), Gaps = 47/397 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V+S     +        +  I +V +         SR        I+A+TG++GKS
Sbjct: 35  ADMVVLSPGVDPRLPEIKAAKDAGIEIVGDI-----ELFSRYAEAP---IVAITGSNGKS 86

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + +  + Q SG +    G   T +    +    TP                     +
Sbjct: 87  TVTTLLALMAQLSGKTVKAGGNLGTPALDLLEGE--TPD-----------------FYIL 127

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R   +   A    N+  DH+D + +   Y  AK ++F      +   ++ 
Sbjct: 128 ELSSFQLETVR--SLNAFAAVVLNVSPDHMDRYDSVSDYQQAKQKIFNG----DGVMVLN 181

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D      ++     G   +  G          +        +              + 
Sbjct: 182 TEDP----FVQEMRIEGRNHIGFGLHKSEGVDFGLLQYDGAVWLAEGESPLLAIDAMKIV 237

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + NAL A  L  A+ +    +L  L+  + +P R   V   +         A    
Sbjct: 238 GKHNLANALAALALGSAMALPMPAMLSALQAFNGLPHRCRLVRVLNEVRWFNDSKATNVG 297

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +       I  +     IV+   G  + Q     + +         ++       ED +K
Sbjct: 298 ACIA---AINGLADDGAIVLIAGGVGKGQDF-SELTESLEKAVRAVVL-----LGEDADK 348

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   I   +   I   +  +A+  A  +    D +++
Sbjct: 349 IATAIPPQVEQ-IHATDMQDAVLKAQSLAQPGDNVLL 384


>gi|78044616|ref|YP_360887.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|109892698|sp|Q3AAE7|MURC_CARHZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77996731|gb|ABB15630.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 464

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 133/401 (33%), Gaps = 45/401 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + +A     +VVS+A S  +       R   P++             +RL  + 
Sbjct: 66  GHR--EENLASDVSLVVVSTAVSQDNPELLKAKRLGIPVMHR-------GELLARLMQE- 115

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV GT GK++ +S +  + ++ G                          + L   
Sbjct: 116 -KKGIAVAGTHGKTTTSSMIAYVLEKEGFD---------------PVIAVGGEIVDLGYN 159

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 + +   + E+    L       +   A   TN+  DH+DY+Q+ +    A  + 
Sbjct: 160 AKAGQGEYMVAEADESDGSFLK------LLPYAAVITNIEADHLDYYQSFEEIKKAFKKF 213

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + + P+      +  D      M + +              F+        +       
Sbjct: 214 ADNIRPEGFGVFCW--DNLQVREMLKGYKKRKFTYGFSPGSDFMLRDYREEQNQLVANIY 271

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                + +    +PG+  + NA  A  +   IG+    + E L + +    RF+ +G   
Sbjct: 272 YKNTLEGELRLKVPGKHNILNAAAATAVLRNIGLSFKAISERLLEFNGAKRRFQILG-ER 330

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
            G  I  DYAH    +E  L+  +      ++VVF      R         ++ +D A+ 
Sbjct: 331 NGALIVDDYAHHPTEVEATLRAAKLYKDRDVLVVFQPHRYTRTHFFYKEFARVLVD-AEK 389

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIE 447
            ++T      E P      E I  E+       +   +  E
Sbjct: 390 VVLTGIYSAGEKPIPGVSGEMIAEEMKKLGKNPLYLESLDE 430


>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
 gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
          Length = 468

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 121/368 (32%), Gaps = 43/368 (11%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+L  +  + +  E  L +TGT+GKS+V +    + +  G S+F  G      S      
Sbjct: 112 LALLVAASWPRSLETAL-ITGTNGKSTVTALTGALLEAGGRSTFTGGNLGVPLS------ 164

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT-NLGRDHIDYH 220
                   L  A++    +    + +E SS+ L+  R+ G   ++ +   N+  DH+D +
Sbjct: 165 -------ELVLAVARGEREAPEALVLECSSYQLETLRVHGSPAVSVAMLLNVSPDHLDRY 217

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            + + Y           L     A++ A DA++  +  R      R + V  +     L 
Sbjct: 218 DSLEHYA-ETKGRVFGGLEPGGLALLSARDAFTPRLR-RFVPEAARCVLVDGEDDRPRLS 275

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                       +            L G     NAL A      +G+        L +  
Sbjct: 276 DASL-------ELGAGESIDRRALALAGRHNALNALFAVLAARHLGVSLDTCEATLRRFQ 328

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM----ILKNIRTITSGRIIVVFGCGGDRDQ 396
            +P R   +             A    S+        +    I  GR        GD   
Sbjct: 329 ALPHRMNPIAERDGVRYFDDSKATNVASVLAGLDGFEQTFVLICGGR-----AKDGDDLG 383

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
             RP++ +    L  +          E  E+  A +  G    +   +  EA+R A    
Sbjct: 384 ALRPVLARQGRALVAL---------GESAEQFMA-MAKGALPCVRVADMDEAVRVAASCA 433

Query: 457 NKQDVLVV 464
              D +++
Sbjct: 434 QPGDAVLL 441


>gi|194290812|ref|YP_002006719.1| udp-N-acetylmuramate--l-alanine ligase [Cupriavidus taiwanensis LMG
           19424]
 gi|229486486|sp|B3R6V8|MURC_CUPTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193224647|emb|CAQ70658.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 140/435 (32%), Gaps = 57/435 (13%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKH 113
            GH     A   GA A+VVS+A S  +       +  I VV   R   L+       G  
Sbjct: 55  HGHD---AANVSGANAVVVSTAVSGDNPEVLAARSQRIPVVP--RAVMLAELMRLKQG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ GT GK++  S V  +    G   +F IG    ++S   + RL T   I    
Sbjct: 108 ----VAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEA 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S  S                       +  +    TN+  DH+D +    A       
Sbjct: 162 DESDASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFI 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQ 289
            F + LP    A++  DD   +E++        R         +                
Sbjct: 202 EFTQRLPFYGIAVLCVDDPNVREILPFVSKPVVRYGFAEDAQIRAVDARAVDGQMHFTVL 261

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +          + +  LPG   V NAL A  +   + +  A +++ L + H V  RF+  
Sbjct: 262 RQLNGHTEPPLEIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRY 321

Query: 350 GTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGK 398
           G  +         +  DY H    +   L   R     R +V+      F    D  +  
Sbjct: 322 GEVATPDGAGTFTLVDDYGHHPVEMAATLAAARGAFPERRLVLAFQPHRFTRTRDCFEDF 381

Query: 399 RPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEII-HGIPGFIEKGNRIE---AIRTAI 453
             ++G +   L        + P  + D   +   +   G    +      E   AI  A+
Sbjct: 382 VKVLGTVDALLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILNAV 441

Query: 454 EMLNKQDVLVVAGKG 468
                 DV+V  G G
Sbjct: 442 ---RPGDVVVTMGAG 453


>gi|227486694|ref|ZP_03917010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235282|gb|EEI85297.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 449

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 125/389 (32%), Gaps = 37/389 (9%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            + L+        +   ++  +  + +S              +A+TGT+GK+S  S V  
Sbjct: 66  DFVLKSPGIKPTDDIVQILEKD-NEIISDIEVSQRLFPDREKIAITGTNGKTSTTSMVAH 124

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I    G  ++ +G       +    +                          E SS  L 
Sbjct: 125 ILNECGKPAYAVGNIGEGVLWQMYEKKGVF--------------------VEELSSFQL- 163

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            H     K   G+  N+  DHID+H +   Y N+K++L       +   I + +D  S++
Sbjct: 164 -HDTQAYKPHIGAILNIKEDHIDWHGSFDDYINSKLKLAANQDQGDYLVINH-EDEISQK 221

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +K          S     + + L+            I            + G     N 
Sbjct: 222 HIKDFKAQIYEFSSQNIVDRGLFLEGNKICLRNGGCVIEEILD--VRDLSVIGRHNYENV 279

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A  L    G++ + +++ ++    +  R E+V T S             +S    +++
Sbjct: 280 MAAILLTYLYGLNLSEIIKAIKTFKSIAHRLEYVRTLSGIDFYNDSKGTNVDSSVKAIES 339

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                  R I++   G D+         K       + ++       E  + +       
Sbjct: 340 FD-----RPILIIAGGYDKHIDYT-DFVKAFRKNGKLMVI--MGATKEKLKALCE---KY 388

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +I   +  EAI TA       DV+++
Sbjct: 389 DIKYILVKDMNEAINTAYSKGENGDVVLL 417


>gi|213650215|ref|ZP_03380268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 370

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 120/331 (36%), Gaps = 17/331 (5%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
           + P ++V +TR+     A+ +  + P  ++A+TG+SGK+SV      I  + G + +   
Sbjct: 1   DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAS 60

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
             +               PI L +            + + A+  G     +   +  A  
Sbjct: 61  NFN----------NDIGVPITLLRLNHD---YDYAVIELGANHQGEIAWTVSLTRPEAAL 107

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             NL   H++   +      AK  ++   LP+   AI+ AD+           +      
Sbjct: 108 VNNLAAAHLEGFGSLAGVAKAKGEIYTG-LPENGIAIMNADNNDWLNWQSIIGDRQVWRF 166

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           S            +    +  + T+       D L PLPG   + NAL AA L +A+G  
Sbjct: 167 SPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGAT 226

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV- 387
            A V   L  L  VPGR   +  +     +   Y     S+   ++ +  +   R++VV 
Sbjct: 227 LAAVKAGLAALKAVPGRLFPIQLSENQLVLDDAYNANVGSMTAAVQVLSEMPGYRVLVVG 286

Query: 388 -FGCGGDRDQGKRPIMGKIA-LDLADIAIVT 416
                G   +     +G+ A     D  + T
Sbjct: 287 DMAELGAESEACHLQVGEAAKAAGIDRVLST 317


>gi|170696722|ref|ZP_02887837.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
 gi|170138385|gb|EDT06598.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
          Length = 467

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 138/431 (32%), Gaps = 55/431 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPEN 116
           I  A     GA A+VVS+A    +       +  I +V   R   L+       G     
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I      S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH+D +    A        F 
Sbjct: 165 DASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-IS 294
             LP    A++  DD   KE++     +   +         +    V A   K   T + 
Sbjct: 205 HRLPFYGIAVLCVDDPNVKEIL--PFVSKPIIRYGLAPDAQVRAVNVEARDGKMHFTAMR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G    
Sbjct: 263 EDAAPLDIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPV 322

Query: 355 G--------GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                      +  DY H    +   +   R    GR  +V      R    R       
Sbjct: 323 TSDGEPRGAYTLVDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFV 381

Query: 407 LDLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-N 457
             L+  D  ++T+     E P        +   +           + ++ +  A+  L  
Sbjct: 382 KVLSTVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALAALVR 441

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 442 DGDVVITMGAG 452


>gi|311693453|gb|ADP96326.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [marine bacterium
           HP15]
          Length = 446

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 123/352 (34%), Gaps = 41/352 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I+A+TG++GK++V + V ++ + +G +    G   T               + L   
Sbjct: 108 DAPIVAITGSNGKTTVTTLVGEMAKAAGRNVAVGGNIGTP-------------ALDLLGQ 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L         +E SS  L+    D +  +A +  NL  DH+D +  +     A  + 
Sbjct: 155 GADL-------YVLELSSFQLET--TDELNALAATVLNLSDDHMDRYPNK----MAYFQA 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + +      AI+  DDA S  + +       R L  G+                  +T 
Sbjct: 202 KQRIFRGCKNAIVNLDDALSTPMARD----NLRFLCFGFHRVNPETFSTRDDDQGTWITF 257

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +         L G   + N + A  L  A G+   ++L    +   +P R EFV   +
Sbjct: 258 GFDNLLLASELKLMGHHNISNVMAALALGHAAGLPMDVMLRVAREFPGLPHRCEFVRRLN 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADI 412
               I         +       I ++   +  VV   GGD +      +   IAL     
Sbjct: 318 DVDFINDSKGTNVGATVA---AIESLAPDKGKVVLIAGGDGKGADFTALEAPIAL-HCRA 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++        D   I   +  GIP     G+  EA+  + E+    D +++
Sbjct: 374 VLLI-----GRDAPAIADVLGSGIP-VHRVGSLAEAVSRSAELAMPGDRVLL 419


>gi|312126685|ref|YP_003991559.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776704|gb|ADQ06190.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 455

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 142/407 (34%), Gaps = 42/407 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    + +    L +    +FL L          +N++A+ GT GK++  S
Sbjct: 64  VIYTAAISKDNPELLAAKRMNLKIYERAEFLGLLMRNF-----KNVIAIAGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +   +   + +     +  + +   + +       S             
Sbjct: 119 MIGYILKKANYNPTIL-VGAFVKQLGGNFVIGSKDYLVVEACEYVDSFLKFN-------- 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +P     +   DD 
Sbjct: 170 ------------PTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K+++ + H     + +      F         + +  V  +           +PG   
Sbjct: 217 NVKDIISKFHTQVVCISTKEKADIFADNISCNDGYYEFDVKNNNNEILAHIKLNIPGFHN 276

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYNAL A  +   + ++S  + + L +      R E VG    G  +Y DYAH    ++ 
Sbjct: 277 VYNALAAFAVASKLRVESLTIEQALSEFCGASRRLEKVG-EFNGIYLYDDYAHHPTEIKA 335

Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR--------- 421
            L  ++ I+ G+++ +F      R +       + +L LAD  IVTD             
Sbjct: 336 TLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAE-SLKLADKVIVTDVYAAREKNIFGIT 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           SE       EI           +        ++   K D++   G G
Sbjct: 395 SEKLYLKLKEIGIDCEYISNFDDIA---CYVVKEAKKGDIIATIGAG 438


>gi|295105488|emb|CBL03032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 467

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 105/356 (29%), Gaps = 29/356 (8%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGA---------------- 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
             A               VE SS  L               TN+  +H+D+H+  Q Y +
Sbjct: 157 --ALLPMLPEVSPEDVAVVELSSFQLIS---MHASPNIAVVTNVTPNHLDHHKDMQEYID 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A  R       +   A++  ++  S+ +             +        L+K   +   
Sbjct: 212 A-KRNILLYQKQPCRAVLGYENEISRSMQADCKGKQVWFTRLHDTDNGAFLRKEDGMLCM 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +         +            L+AA   +   +    + +       V  R E 
Sbjct: 271 AEDGVVTPFLAQKDVK--LRGLHNIENLLAAAAAVWGEVPVEAIRQVGSTFTGVEHRIEP 328

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T             +       L++       R +++   G D+     P+  +I   
Sbjct: 329 VRTLDGVLYYNDSIGTSPTRTIAGLRSFD-----RKVILIAGGYDKHIPYEPLAPEIIAH 383

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++ ++    PR E   +  +             N   A+  A       D++++
Sbjct: 384 VKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDIIIL 439


>gi|253564350|ref|ZP_04841807.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_2_5]
 gi|251948126|gb|EES88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_2_5]
 gi|301161369|emb|CBW20909.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 638R]
          Length = 444

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + +     G R     +           
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPI---IKRELDKHGIRAHLYPFSAIKEEGSIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++  +T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 247 VEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIEE 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +    +  G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHEFFDRL--GLPVAEVQTGMKDAVEAAYKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|298490184|ref|YP_003720361.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
 gi|298232102|gb|ADI63238.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
          Length = 493

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 118/409 (28%), Gaps = 41/409 (10%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A +    PIL   +    L   A           +AV GT GK++
Sbjct: 96  VICSTAINTNNLEYKAALELGCPILHRSDVLAAL--IADYY-------SIAVAGTHGKTT 146

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  +  ++GL    +     ++++  + RL                          
Sbjct: 147 TTSIIGYMLLQAGLDPTIL-VGGEVNAWEGNARLGE--------------------SKYL 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L       G  TN+  DH D+++  +   +   +  +             
Sbjct: 186 VAEADESDGSLVKHSPAIGVITNIELDHPDHYENLEEVVDTFQKFAQGCQILVGSIDCDT 245

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                    +R        L       +              +              L  
Sbjct: 246 VRDCFDRPGQRLKPTISYSLHPETNADYTVTNIDYRADGTTALVWEKAKALGVLNLRLLS 305

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N L A  +  ++G++   + + +        RFEF G  + G     DYAH  + 
Sbjct: 306 RHNLSNGLAAVAVGRSLGLEFGEIAKGIATFEGARRRFEFRG-EAAGITFIDDYAHHPSE 364

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSE--- 423
           +   L            VV      R       + + A     AD+ ++TD     E   
Sbjct: 365 IRATLAAASLQARPGQRVVAIFQPHRYSRTLTFLDQFAGSFAHADLVVLTDIYSAGEADL 424

Query: 424 ---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E++  EI    P  I +          +  L   D+ +  G G+
Sbjct: 425 GQISGEQLADEIAKQHPQVIYQPTLSSIRELLLSTLRPGDLALFLGAGN 473


>gi|53711599|ref|YP_097591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           fragilis YCH46]
 gi|60679849|ref|YP_209993.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60389935|sp|Q64ZL9|MURD_BACFR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81174945|sp|Q5LIJ5|MURD_BACFN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52214464|dbj|BAD47057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           fragilis YCH46]
 gi|60491283|emb|CAH06031.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 444

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + +     G R     +           
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPI---IKRELDKHGIRAHLYPFSAIKEEGSIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++  +T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 247 VEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIEE 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +    +  G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHEFFDRL--GLPVAEVQTGMKDAVEAAYKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|229220794|ref|YP_208580.3| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA
           1090]
 gi|229597261|ref|YP_002002446.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|260439879|ref|ZP_05793695.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|109892712|sp|Q5F6L9|MURC_NEIG1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 468

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 63  NGADVVVASTAVKKENPEVVAALERQIPVI----PRALMLAELMRFRDG------IAIAG 112

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 113 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 171 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 211 GKAFLCVDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 268

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 269 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 328

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 329 GGTALLVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 387

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +  +  + +L   DV++
Sbjct: 388 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVL 447

Query: 464 VAGKG 468
             G G
Sbjct: 448 NMGAG 452


>gi|326318672|ref|YP_004236344.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375508|gb|ADX47777.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 861

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 71/236 (30%), Gaps = 13/236 (5%)

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A +               +            + +++     +  +      +  +D 
Sbjct: 605 PHVAAMAPSSPGKVIFFALDRHHPVMATHRARGQRVVYVDGDHIVAAEDSWREQIALRDI 664

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGG 356
                    FQV NA+ +      IG+    +   L          PGRF     + RG 
Sbjct: 665 PLTRNGAIGFQVENAMASIAAAWGIGLPWDTIRRGLAGFVNDSDNAPGRFNV--MDFRGA 722

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DY H  +++  ++  +  +   R  VV    GDR         +I     D  I+ 
Sbjct: 723 TVIADYGHNPDAMRALVSAVDALPGNRRSVVISGAGDRRDEDIRGQTEILGAAFDDVILY 782

Query: 417 DDNP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D   R     ++ A +  G+          E      AI  A+  L   D+ +V 
Sbjct: 783 QDAAQRGRADGEVMALLREGLANASRTKYIDEIRGEFAAIDAALARLQPGDLCLVL 838


>gi|126461545|ref|YP_001042659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103209|gb|ABN75887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 477

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 149/457 (32%), Gaps = 44/457 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +FVA+  ++ DGH F+ +A+A+GA A +VS           +  + 
Sbjct: 25  TGVSIDTRSLGPGDLFVALA-DQRDGHAFVAEALARGAAAALVSR------RPEGLPEDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++ VTG+ GK+S    ++      G         
Sbjct: 78  PLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKTSTKEMLRATLGGQGTVHAAEASY 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  + +    V        +H  +   L  +     +  
Sbjct: 138 NNHWGV----------PLTLARMPADVDFAVVEIGM----NHPGEIAPLSRLARPHLALI 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                         A    +     E L     AI+ A    S  +  RA   G   ++ 
Sbjct: 184 TTVAAAHLEAFDSLAAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARAAALGVPAVTF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L  +           S  G  F F    PG     NAL       A+G+D 
Sbjct: 244 GQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATLAAAEALGLDL 303

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNS-----------LEMILK 374
            +    L       GR                  +D A  +N                  
Sbjct: 304 TIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASLELLAAMAPTD 363

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKIRAEI 432
            I  I +GR I + G   +    +  +   +A    LA+IA+V    PR     +   E 
Sbjct: 364 GIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR----MRALHEA 419

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           +             E +  A  +++  D+++V G KG
Sbjct: 420 LPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|254485599|ref|ZP_05098804.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
 gi|214042468|gb|EEB83106.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
          Length = 471

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 134/413 (32%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE IV+SSA      +  A   +  PI+        L            ++ +AV GT 
Sbjct: 70  GAEVIVISSAIKPGNPELDAARFAGLPIVRRAEMLAELMRL---------KSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++  + G+    +     I ++  + R+                      
Sbjct: 121 GKTTTTTMVAELLVKGGIDPTVV-NGGIIHAYGSNARMGQGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++              F   +P    A
Sbjct: 163 MVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGNFDTLRQ-GFLDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDF 302
           I   D    + ++ +  +          Q     +         +      S +    D 
Sbjct: 219 ICCIDHPEVQALVGKITDRRVMTYGFNAQADVRAVNLHYKAGVAHFDIQFQSEDITIKDC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +GI    +   L     V  RF  VG    G  I  DY
Sbjct: 279 SLPMPGDHNVSNALAAVAVSRHLGIKGEEIRAALAGFGGVNRRFTKVG-EVDGVSIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  T GR+I V                    + AD+  + +     
Sbjct: 338 GHHPVEITAVLKAARQATEGRVIAVHQPHRYSRLSHHFDEFCACFNDADVVGIAEVYAAG 397

Query: 423 EDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           EDP       + +   I HG        +  +  R   E     D++V  G G
Sbjct: 398 EDPIPGASRDDLVAGLIRHGHRHARAVQSEEDLARLVKEQAGPGDMVVCLGAG 450


>gi|117924062|ref|YP_864679.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetococcus sp. MC-1]
 gi|166224701|sp|A0L5N0|MURC_MAGSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117607818|gb|ABK43273.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetococcus sp. MC-1]
          Length = 476

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 138/434 (31%), Gaps = 56/434 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    QAI  GA+A+V SSA    +          I VV    + L+      YG    
Sbjct: 56  GHT--AQAIE-GADAVVTSSAVKRDNPEVMAARALRIPVVPRA-EMLAELMRLKYG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  +   + +    +     + S   +  +   + +      S
Sbjct: 108 --IAIAGTHGKTTTTSLVAALLGAADMDPTVV-NGGIVKSLGSNAHVGQGAFLVTEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +       TN+  +H++++ T  A   A  R F 
Sbjct: 165 DGSFLK--------------------LSPTIAVVTNMDPEHMNHYGTFDAVREA-FRGFV 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    A++  D      + +   +       +  Q     +             I  
Sbjct: 204 SKIPFYGLAVLCGDHPEVSLLAEEMLDKRVITYGLSDQVDLQAVHIRQEGIVTHFEVIQH 263

Query: 296 EGKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +                +PG   V N L A  + + + +     +  L     V  RF+ 
Sbjct: 264 DRHHGRESRSLGTIQLNMPGCHNVSNTLAALAVAMELAVPWERCVRALAGFGGVQRRFDL 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIA 406
           +   +    I  DYAH    +   ++ +R      R++ VF      R         +  
Sbjct: 324 LHQEAA-ITIIDDYAHHPVEIAATMEAVRNGYPQQRVVAVFQPHRYSRVLDHMHDFCR-C 381

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG---FIEKGNRIEAIRTAIEM-- 455
              AD+ +V +     E P      E+    ++ GI             +A R  +++  
Sbjct: 382 FKNADVVLVDEIYRAGEQPPEGPLGEQGAIVLVEGIRRHSSAQVALLADDA-RWGLDLGG 440

Query: 456 -LNKQDVLVVAGKG 468
            L   DV+V  G G
Sbjct: 441 QLKPNDVVVFLGAG 454


>gi|193213699|ref|YP_001999652.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
 gi|226711893|sp|B3QLW6|MURD_CHLP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193087176|gb|ACF12452.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
          Length = 467

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 119/405 (29%), Gaps = 46/405 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           AE  VVS                 I VV          AS         I+ +TGT GK+
Sbjct: 69  AELCVVSPGIPRTAPVIREMEARGISVVSEI-----ELASWFCR---ARIIGITGTDGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + A+ + +IC+  G                    + TP    ++               +
Sbjct: 121 TTATLIHRICEADGEQ--------QGYRAFSVGNIGTPFSSEVSGME------PDDIAVL 166

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L+       +      TN+  DH+D +      +                 I  
Sbjct: 167 ELSSYQLE--GCSSFRPNIAVLTNITPDHMDRYGGDIHAYARAKFRIHASQQAGDTLIYN 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--------SVEGKD 299
            DD   +   +       +V+  G + +         +       +             D
Sbjct: 225 HDDPLLRAHFEGDGPWPFKVVRTGLKAESFEGVSEDFVSVADGWIVIRTAGLTEQFMPVD 284

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                   GE  +YN L +     A G+    V   L +   V  R EFVG+      I 
Sbjct: 285 EVMKPGFRGEHNLYNVLSSVAAARAAGVRDDAVRRSLSEFGGVEHRQEFVGSFCGVDWIN 344

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-MGKIALDLADIAIVTDD 418
              A   N++   L+ +          +    G RD+G     + ++  +     +    
Sbjct: 345 DSKATNVNAMRQALQTV-------PAGMVLIAGGRDKGNDYASIAELVKEKVSCIVAI-- 395

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               E   KI AE   G+    E  +  EA+  A +       ++
Sbjct: 396 ---GESRGKI-AEAFRGVVPVFEAASLHEAVELARQSARPGGSVL 436


>gi|118602740|ref|YP_903955.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|166224725|sp|A1AX27|MURC_RUTMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118567679|gb|ABL02484.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 469

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 76/415 (18%), Positives = 135/415 (32%), Gaps = 41/415 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A+ IVVSSA    +          I VV    + L+      +G      +A+ GT G
Sbjct: 70  KNAQVIVVSSAIKDNNLEVIKAHQLNIPVVPRA-EMLAELMRFRFG------IAIAGTHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I   + L    I     ++S   + +L     +      S  S       
Sbjct: 123 KTTTTSIITHILNVAELDPTYI-IGGILNSSGINAKLGESDYLIAEADESDASFLH---- 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  +             F   LP     I
Sbjct: 178 ----------------LQPMLSVITNIDYDHMVTYDNDYQNLKDAFIKFSANLPFYGACI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD    E++   H                   K   +     V      K       
Sbjct: 222 MCADDEGVNEILNSIHRPLITYGFNNGTDIQAVNVKQVGMQMYFDVIYDKYTKQIPIKLN 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDY 362
           L G+  + N L A G+C  + I + ++ + L     V  R +  G  +       ++ DY
Sbjct: 282 LIGKHNILNTLAAIGICCELNIKTNIIQKALANFSGVARRLDHHGKLNINNAQVSLFDDY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
           AH    +  + ++++     + +VV        +  R +       L  ADI I+ +  P
Sbjct: 342 AHHPKEISAVFESLKNTYQDKRLVVIFQPHRYSRT-RDLFDDFVYTLSSADILILLNIYP 400

Query: 421 RSEDPEK------IRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P        +   I        +   N  E +     ++N  D+L++ G G
Sbjct: 401 AQEKPIAHINSSTLANAIRRSSGLNPMVIKNPKEILTVLPSIVNNNDILLILGAG 455


>gi|33603175|ref|NP_890735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           bronchiseptica RB50]
 gi|62900580|sp|Q7WFS0|MURD_BORBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33568806|emb|CAE34564.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
           RB50]
          Length = 510

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 121/386 (31%), Gaps = 49/386 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A     +    +LA+TGT+GK++V +  +Q+ +  G+S+   G  S  +  A  
Sbjct: 118 RALAGLAESREYRP--RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAALI 175

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           + L       +                +E SS  L+  R   +   A    N+ +DH+D+
Sbjct: 176 DALDQDDLPQV--------------WVLELSSFQLETTRT--LAPDAAVVLNVTQDHLDW 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H   QAY  AK R+    L     AI+  DD  +  +++       R            +
Sbjct: 220 HGDMQAYAQAKARI----LKPARLAIVNRDDPLTVAMVESLQALNVRSFGRDVPALVGDM 275

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                              D     P   +           +   + +D+  +      L
Sbjct: 276 GLELGQGVAWLTACESNDFDEPAPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNAL 335

Query: 340 HVVPGRF---------------------EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           + +                         E            VDY + S    +       
Sbjct: 336 NALAAMQLARSLDLGWGPMLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAAL 395

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G+ +V+   G  + Q   P++  +    A   ++        D   I   +      
Sbjct: 396 EGLGQQVVLIAGGQGKGQDFSPLVP-VVRRHARAVVLI-----GVDGAAIGKVLEPTGVP 449

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   +  EA+R A E+    D +++
Sbjct: 450 CVAAADMREAVRRAAELAQPGDAVLL 475


>gi|67459429|ref|YP_247053.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia felis URRWXCal2]
 gi|75536156|sp|Q4UKN9|MURC_RICFE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|67004962|gb|AAY61888.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia felis URRWXCal2]
          Length = 478

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 140/436 (32%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA +  +      +    PI+        L           
Sbjct: 64  GH--AEQNITN-VSYVVISSAINSNNPEIKEALERKIPIIRRAEMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  + 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYKDFETLIGA-FKS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK-- 404
             V        +  DYAH    ++  L   + I   +   V          +   +    
Sbjct: 330 TKVA-EYNKAVVIDDYAHHPEEIKATLATAKNIADKQNGKVIAIFQPHRYSRMQHLFDDF 388

Query: 405 -IALDLADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
            +  + AD+  +TD     E+P           KI     H    F+ + +  +A+   I
Sbjct: 389 MLCFNDADMIYITDIYAAGEEPIEGITSQNLVNKITKNKHHDQANFLAELD--DAVEVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +  +  D++++ G G+
Sbjct: 447 DNASSGDMIIMMGAGN 462


>gi|116627601|ref|YP_820220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMD-9]
 gi|122267801|sp|Q03L98|MURD_STRTD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116100878|gb|ABJ66024.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus LMD-9]
          Length = 450

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 140/427 (32%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS----- 103
            DG  F         + +G + +       L D +  +    P +  DN     +     
Sbjct: 38  NDGKAFEENPSAQSLLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNPMVARALEKEI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + +  +    G S    G     +S  
Sbjct: 98  PVWTEVELAYLVSEAP---IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
               +T    +                  +E SS  L    ++         TNL   HI
Sbjct: 155 A-QSVTNQDTL-----------------VMELSSFQL--MGIESFHPHIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  AK  +  E+   +   + +  D     + K         +      + +
Sbjct: 195 DYHGSFEEYVAAKWNIQNEMTSDDFIILNFNQD-----LAKELATQTNAQVVPFSTVEKV 249

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +       +  + +   +      +PG   V NAL    +    G+ +  + E L 
Sbjct: 250 DGAYLENGGLYFKGELLMHADEL----GVPGSHNVENALATIAVAKLSGVSNQAIKETLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FV T           +     +    K +    + ++I++   G DR   
Sbjct: 306 SFGGVKHRLQFVDTIDDVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I   L  + I+ +  PR       RA    G+  +++  +  +A R A E  +
Sbjct: 362 FDELIPDITG-LKKMVILGESAPR-----VKRAADKTGVT-YLDAKDVADATRIAFEQAS 414

Query: 458 KQDVLVV 464
             DV+++
Sbjct: 415 AGDVVLL 421


>gi|320334251|ref|YP_004170962.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus maricopensis
           DSM 21211]
 gi|319755540|gb|ADV67297.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus maricopensis
           DSM 21211]
          Length = 462

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 130/422 (30%), Gaps = 38/422 (9%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  +G + ++V+S    +D      ++   + V    + L    +   G    
Sbjct: 54  GHD---AAHVRGVD-VLVASEAVPKDHPELTAAHAQGVEVQPRMRLLGELLA---GGPS- 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + V GT GK++  S +      +GL          +  F  + R+           ++
Sbjct: 106 --VGVIGTHGKTTTTSMIAVTLAGAGLDPAAF-VGGIVPEFGSNARVGAG------PFVA 156

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            +         +   +                     G     Y ++ +A   A  R   
Sbjct: 157 EVDESDPKFQELACGTA-------VFTNAEDDHIGGAGTAQATYWESVEAQHAAFARFVR 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +   A     DA  + +      A   +              V    N    T+  
Sbjct: 210 --QAERVLACADWVDAEGRSLDALLVGAREVLTYGTGADCTYRAVDVRPDANGTSFTVER 267

Query: 296 EGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+        LPG   V N L A  +    G D       L        R++ +G    
Sbjct: 268 RGEVLGSARVRLPGTHNVLNGLAALAVADLHGADFPAAAAALAAFTGPGRRWQHIG-ELN 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIA 413
           G  +  DYAH +  +   ++     T  R+ VVF      R Q   P + + +L  AD  
Sbjct: 327 GALVIDDYAHNATKVAAAIEAAHQ-TGRRVRVVFQPHRYLRTQQSWPRLAQ-SLMGADEV 384

Query: 414 IVTDDNPRSEDPEK------IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D    SE P +      I   +   G  G     +R + ++   E     DV+V  G
Sbjct: 385 LLLDIAAASEPPIEGIHATLISDRMREEGHAGVRYSPDRAQVVQYLRETAAPGDVIVTMG 444

Query: 467 KG 468
            G
Sbjct: 445 AG 446


>gi|89055254|ref|YP_510705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Jannaschia
           sp. CCS1]
 gi|118595660|sp|Q28NN2|MURD_JANSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|88864803|gb|ABD55680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jannaschia sp.
           CCS1]
          Length = 460

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 128/410 (31%), Gaps = 49/410 (11%)

Query: 67  GAEAIVVSSAYSL------QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENIL 118
           G   +V S           +   A   +  P+   ++   F        +  H  P  ++
Sbjct: 61  GVACLVTSPGIPHLYSTPHRAIVAAYAAGVPV--DNDIGLFFRSLGQGDWAFHDTPPRVV 118

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GKS+ ++ +  I + +G      G         +         I L        
Sbjct: 119 AVTGSNGKSTTSALIAHILEEAGTPVQLAGNIGRGVLDIEPPIDGEVIVIEL-------- 170

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                      SS+  +  R   +      FTNL  DH++ H     YF AK RLF E  
Sbjct: 171 -----------SSYQTELAR--ALTPDIAVFTNLSADHLERHGGMGGYFAAKRRLFSEGG 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P+ +   +   +               R++ V           V                
Sbjct: 218 PERAVIGVDEIEGQYLAGQLVEGPEDGRLIRVSSGKLSGPGWDVSTRKGWLSEFRKGRQA 277

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D   +  LPG     NA  A G+C A+G+   ++         +P R + V   +  
Sbjct: 278 ASIDLRGVPGLPGAHNHQNAACAYGVCRALGLAPRVIEAAFATFEGLPHRSQRVAEINGV 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +    A   ++    L   + I          CGG    G    + + A  +A   ++
Sbjct: 338 FYVNDSKATNVDAATKALGAFKRIRW-------ICGGLEKDGGLEALWEAAGHVAKAYVI 390

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +   +E       +I   +      G+   A+  A       D +++A
Sbjct: 391 GRE---AEAFALHLGDIPKDV-----CGDMATAVARASADAQPGDTVLLA 432


>gi|160933177|ref|ZP_02080566.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
 gi|156868251|gb|EDO61623.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
          Length = 492

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 114/364 (31%), Gaps = 50/364 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I AVTG+ GK++  + + ++ + +G +    G          +         
Sbjct: 140 FFDLCPCRIYAVTGSDGKTTTTTIISEMLKAAGKTVHLGGNIGCPLLPKVEEIR------ 193

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             VE SS  L   R           TNL  +H+D H+  Q Y +
Sbjct: 194 ------------KDDVAVVELSSFQLISMRKS---PDVAVVTNLAPNHLDIHKDMQEYID 238

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +          A++  D+  ++ +                  + + L      H +
Sbjct: 239 AKKNIILH-QNAFGRAVLNLDNEITRGLAPLVRGELSYFTRQHTTDRGVCLNGGAICHRR 297

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             V   +          +PG   V N + A        +    + +  E    V  R EF
Sbjct: 298 NGVVSRIMDVK---DIRIPGNHNVENYMAAIAAVWG-EVSPEQMRQVAESFPGVEHRAEF 353

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +         ++      + I++   G D+       MG +  +
Sbjct: 354 VRNVDGADYYNDSIASSPTRTISGTLSL----YSQKIILIAGGYDKKIPYDA-MGPVVNE 408

Query: 409 LADIAIV---TDDN-----PRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              + I+   T D       ++E  DP+ IR          I   N  EA+ TA  +  K
Sbjct: 409 KVKLLILMGNTADKIQSAVTKAENYDPQAIR---------IIRVENMEEAVETAHRLAQK 459

Query: 459 QDVL 462
            DV+
Sbjct: 460 GDVV 463


>gi|114799440|ref|YP_759855.1| putative UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas
           neptunium ATCC 15444]
 gi|114739614|gb|ABI77739.1| putative UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 469

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 121/394 (30%), Gaps = 51/394 (12%)

Query: 95  VDNTRKFLSLFASRLYGKH--------PENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           V +    L + A R+                + V GTSGKS+    +  I   +G S   
Sbjct: 82  VPDIAAALRVGARRMSRAQMLSALFNAAPTAIGVAGTSGKSTTTGMIAWILHHAGKSPTV 141

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +       + A      TP  +         +S  V    +  S        + G     
Sbjct: 142 M-------NGAVMKNFQTPDAL--------FASSLVGASGIFVSEVDESDGSIAGYNPRV 186

Query: 207 GSFTNLGRDHIDYHQTQQAY--FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +N+  DH    + +  +  F A+       L  +  A +  D              G
Sbjct: 187 AVVSNISLDHKSMDELRALFGGFAARAETVVLNLDNDETARMAGDFP------------G 234

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVAAGLC 322
               S+      +  + +         ++  +            PG   V N L A    
Sbjct: 235 AVTYSLENPAARLTAQNIAPAPTHITFSVHDQTSGATAPIRLATPGRHNVSNVLAAIAAT 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +A G+  A   + L     +  RF+ +GT   G  +  D+ H  + +   L+ +     G
Sbjct: 295 LACGVTLAEAAKALASFAGISRRFDVIGTEG-GVTVIDDFGHNPDKIAATLRTVNQFP-G 352

Query: 383 RIIVVFGCGGDRD-QGKRPIMGKIALDLAD-IAIVTDDNP--------RSEDPEKIRAEI 432
           R++V+F   G    +  R        +  D   I+    P        RS   + + A+I
Sbjct: 353 RVLVMFQPHGFGPLRNMRREFAACFAENLDAEDILLMPEPAYFGGTVDRSVGSQDLAADI 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                     G+R        E+    D ++V G
Sbjct: 413 RALGREAHALGDRAACGARLFELAKPGDRILVMG 446


>gi|296133658|ref|YP_003640905.1| UDP-N-acetylmuramate/alanine ligase [Thermincola sp. JR]
 gi|296032236|gb|ADG83004.1| UDP-N-acetylmuramate/alanine ligase [Thermincola potens JR]
          Length = 459

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 136/411 (33%), Gaps = 44/411 (10%)

Query: 69  EAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             +VVSSA     ++ +   +    IL   +    L+   +       +  +AV G  GK
Sbjct: 67  RVVVVSSAISPDNEELAEARKKGLKILHRGDV---LAGLMAE------KKGIAVAGAHGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  + +++GL    +     +     + +L     +      S  S        
Sbjct: 118 TTTTSMIALVLEKNGLDPTVV-VGGELFDIGSNAKLGKGEYLVAEADESDGSFLK----- 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  DH+DY+ + +    A     E++  +    + 
Sbjct: 172 ---------------LSPYIEVITNIEDDHLDYYGSTEKIDAAFQEFTEKIPDEGFCILC 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +       +V+            +G   ++     +C                      +
Sbjct: 217 FNS--PKVKVLADKLKKPFISYGIGVPAEYEGRNILCQGTQSSVDVFYRNEYLGKLRLNV 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  + NAL A  +   +G+    V + L     V  RF+ +G   +G  +  DYAH  
Sbjct: 275 PGEHNLANALAALAVGRLVGLSFEQVADALASFTGVGRRFQLIGQ-VKGITVVDDYAHHP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             L+  L+  R     RII VF      R +      G+ A    DI I+T+     E P
Sbjct: 334 TELKATLQAARKAGFARIISVFQPHRFTRTKFLYKQFGE-AFHGPDIIIITEIYSAGEKP 392

Query: 426 ------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKGH 469
                 + I  E+       +      E I    +      D+++  G G+
Sbjct: 393 IAGVSAQLIIDEVKKHTTAPVYFLKTEEDILEFLLANTRSGDLVLTLGAGN 443


>gi|265764983|ref|ZP_06093258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_16]
 gi|263254367|gb|EEZ25801.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_16]
          Length = 444

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + +     G R     +           
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPI---IKRELDKHGIRAHLYPFSAIKEEGSIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++  +T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 247 VEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIEE 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +    +  G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHEFFDRL--GLPVAEVQTGMKDAVEAAYKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|27381717|ref|NP_773246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|27354886|dbj|BAC51871.1| bll6606 [Bradyrhizobium japonicum USDA 110]
          Length = 459

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 119/384 (30%), Gaps = 54/384 (14%)

Query: 24  QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS 83
            + +  I+ V+ DSR ++ G +FVA+ G    G  FI         A   +         
Sbjct: 20  SFPDTPIDFVTQDSRLVKPGSLFVALSGTPSGG--FI--------SAFASARDGWEFADK 69

Query: 84  ATIRSN-------------TPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A                   P +VV +T    L   A     +    ++ +TG++GK+S 
Sbjct: 70  AEAAGAAAMIVPHEIAGIRVPQIVVKDTLIDGLWGLARAARARFNGPVIGLTGSAGKTST 129

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F+          S                      P+ L    +      +  V +  
Sbjct: 130 KEFLAAYPNAYASPSSFNNFWGV--------------PLTL---CNARPDASLWVVEMGM 172

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +  G      +  +       N+   H++   + +A    K+ +   L       +    
Sbjct: 173 NQTGEIARLSELTRPTVALVVNVQPVHLEKLGSLEAIRREKVSIALGLPEDGVLVLPAGL 232

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                    +A     +V+  G   +   +          QV   +  K   F       
Sbjct: 233 ---------KASEWKGKVVRFGEHAEVHEVT-HAPHGESWQVVAMIGKKQIAFSLTPGAP 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            +V NAL A     A  +D+A +   L+++ ++ GR            I   +     S+
Sbjct: 283 HRVQNALAALASIRAANLDAATLAIKLDRVGIMTGR-GVEQAVGGVTVIDDSFNGNPASV 341

Query: 370 EMILKNI--RTITSGRIIVVFGCG 391
              L ++  R +T GR I V G  
Sbjct: 342 AAALHSLQARNVTGGRRIAVLGDM 365


>gi|332305223|ref|YP_004433074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172552|gb|AEE21806.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 441

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 133/397 (33%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS   SLQ  +        + VV +         +         +LAVTG++GKS
Sbjct: 64  ADMLVVSPGLSLQTAAIQEAIEAGVQVVGDI-----ELFAMFNNTP---VLAVTGSNGKS 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +VA+   ++C   G  +   G   T               + L +  + +       + +
Sbjct: 116 TVATLAYEMCIAGGKKALLGGNIGTP-------------ALELLEKDADI-------IVL 155

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +     NL  DH+D H    +Y  AK+R++++           
Sbjct: 156 ELSSFQLES--THTLRPLVACMLNLSDDHLDRHGDMLSYQRAKLRIYKDARFSVCNRDDA 213

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A    +         +         +     L    A  + Q   +  E    +      
Sbjct: 214 ATWPMTINPDVMFGLSSSERGLSWDKDTAQLLLDGKAYLDSQACMLVGEHNMLNIQ---- 269

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                     A  + +  GI+   +         +  R + V  +S    I    A    
Sbjct: 270 ---------AATAMTMLAGIELEAIKSAAMNFAGLAHRCQTVAMSSNVRWINDSKATNVG 320

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +  +     G++I++ G  G +     P+  +    ++++  +  D P       
Sbjct: 321 ATIAAIDGLAPTCKGKLILIAGGDG-KGADFSPLEERFNHQVSELITLGKDGP------- 372

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E+    P   +  N  +A++ A  + +K   +++
Sbjct: 373 ---ELAKLKPSSHQVVNLEDAVQLAASLASKDSTVLL 406


>gi|240017226|ref|ZP_04723766.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           FA6140]
          Length = 506

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVI----PRALMLAELMRFRDG------IAIAG 150

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 151 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 208

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 209 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 248

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 249 GKAFLCVDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 307 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 366

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       KI     
Sbjct: 367 GGTALLVDDYGHHPVEMAATLAAARGAYPDKRLVLAFQPHRYTRTRDLFEDFTKILNT-V 425

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +  +  + +L   DV++
Sbjct: 426 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVL 485

Query: 464 VAGKG 468
             G G
Sbjct: 486 NMGAG 490


>gi|332528462|ref|ZP_08404454.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
 gi|332042141|gb|EGI78475.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
          Length = 477

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 139/434 (32%), Gaps = 55/434 (12%)

Query: 57  HLFIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKH 113
             F+  A      A+A+V S+A    +       +  I +V   R   L+          
Sbjct: 52  RTFVGHAAQHVADADAVVTSTAVKADNPEVLAARDKHIPIVP--RAVMLAELMRL----- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            +  +A+ GT GK++  S V  +   +G   +F IG    ++S   + RL     I +  
Sbjct: 105 -KRGIAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANARLGQGEFIVVEA 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S  S                       +  +    TN+  DH++ +            
Sbjct: 162 DESDASFLN--------------------LLPVLSVVTNIDADHMETYGHDFGRLKQAFV 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   +P    AI+  DD   +EV    +               +    V A+  +   T
Sbjct: 202 DFLHRMPFYGTAILCTDDPAVREVADTVNCPITSYGFGD--NAQVRAVNVRAVGGQMHFT 259

Query: 293 ISVEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                     D + +  L G   V NAL A  +   + I    +L+ L +   V  RF+ 
Sbjct: 260 AQRRNGVVLPDLEVVLNLAGRHNVLNALSAIAVAAELEIPDVALLKALAEFKGVGRRFQR 319

Query: 349 VGTNSRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR---PI 401
            G           +  DY H    +   L   R    G+  +V      R    R     
Sbjct: 320 YGEIPAKGGGTFTLIDDYGHHPVEMAATLSAARGAFPGQR-LVLAFQPHRYTRTRDCFED 378

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIE 454
             K+  + AD  ++ +     E P        +   +           + I A+ +T ++
Sbjct: 379 FVKVIGESADAVLLAEVYAAGESPIVAADGRSLTRALRVAAKVEPVFVDDIAAMPQTILD 438

Query: 455 MLNKQDVLVVAGKG 468
           +    DV++  G G
Sbjct: 439 LARAGDVVMCMGAG 452


>gi|296133262|ref|YP_003640509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296031840|gb|ADG82608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 473

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 148/427 (34%), Gaps = 36/427 (8%)

Query: 19  SIFPMQWRERKINEVSSDSR--HIQAGWIFVAIVG-NKEDGHLFIPQAIAQGAEAIVVSS 75
            +      ++KI  +   SR   ++ G ++  + G    D +  I  A+ +GA A+V+S 
Sbjct: 14  GVLRQGDPQQKITGI--MSRCKAVKPGQVYFDVKGGPGSDEN--ILVALDKGAVALVISK 69

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
               +           ++ V           S    +    ++ VTGTSGK++    +  
Sbjct: 70  ---HKKKLPFNNHKISVIAVPKVWDAFWDCVSYHRDQFNIPVVGVTGTSGKTTTKEMIAS 126

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I ++             I    Q+  L +  P ++ +  +   +     + +    H   
Sbjct: 127 IFKKKW---------GKILKTEQNLNLPSFVPGHIMRLTAEHKAAVFE-IGMNRRGHVAK 176

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q R+  IK + G  TN+G+ H+    +++A    K  + E +       ++   D  +  
Sbjct: 177 QSRV--IKPMIGIITNIGQAHVGMLGSKEAVIEEKGSIIEGIPKNGY--LLINADDENSG 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +  +   G  +            + +    +       + GK+     P+ G+  VYNA
Sbjct: 233 KLDLSSFQGKTLRFGIKNKADYVAEDIATGLDFVSFKTVIYGKEEQIRVPISGKHNVYNA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A      + I+   + + L        R + V   +    I   Y    +S+   L+ 
Sbjct: 293 LAAIAASTLLNIEVKYIKQGLAGFRRPKLRLQLVKGINDSLLINDTYNANPDSVIAGLEV 352

Query: 376 IRTITSGRI-IVVFG---CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           ++ +   R  I V G     G         +G+   +L    ++T          K+  +
Sbjct: 353 LKELAKDRTSIAVLGNMLEQGVFTNEAHQRVGRRVQELGIDYLIT--------IGKLARQ 404

Query: 432 IIHGIPG 438
           I  G   
Sbjct: 405 IAVGARK 411


>gi|332704500|ref|ZP_08424588.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554649|gb|EGJ51693.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 454

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 148/416 (35%), Gaps = 52/416 (12%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           A  +V S+A      +     R   P++     R   L+       G      +AV GT 
Sbjct: 65  AHVVVKSTAVPETNPEVQEARRLGIPVI----PRAEMLAELMRLRTG------IAVAGTH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S + +I   +GL    I     ++S+  +  L     +      S  S      
Sbjct: 115 GKTTTTSLLAEIFTAAGLDPTVI-IGGRLNSWGANAYLGEGEYLIAEADESDGSFLV--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  I    TN+  DH+D++  QQA   A    F   +P     
Sbjct: 171 -----------------LAPIITIVTNVDADHLDFYPDQQAIDRA-FTEFMNKVPFYGVN 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD   + ++        R+++ G +       ++ +   +    + V+ + +  + 
Sbjct: 213 VVCGDDPGVERIL---PGIRRRIMTYGLRPGNRIRGEITSCQERCIFKLYVDEEYWADVV 269

Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
              PG   V N++ A G+ +  G+    +L+ LE+   V  RFE  G    G  +  DY 
Sbjct: 270 LNKPGRHNVLNSMAAIGVALEAGLPKEAILQGLERFGGVGRRFEIKG-EKGGILVVDDYG 328

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    +   L   +     R +VV        + K  + G        AD+ ++T+    
Sbjct: 329 HHPAEIGATLATAKDCYPERRLVVAFQPHRFTRTK-ALFGDFCKVFDVADVLLLTEIYAA 387

Query: 422 SEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
           SE P        +   I   G        N  E +  A+  +L   DVL+  G G+
Sbjct: 388 SEAPIPGVSGLSLAQGIRQVGKVDVSFFPNFEE-MEAALPGLLRPGDVLLTLGAGN 442


>gi|206971160|ref|ZP_03232111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218232675|ref|YP_002368712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus B4264]
 gi|228954189|ref|ZP_04116217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071412|ref|ZP_04204634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|229081165|ref|ZP_04213675.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|229152110|ref|ZP_04280305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|229180188|ref|ZP_04307532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|226711881|sp|B7H6P8|MURD_BACC4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206733932|gb|EDZ51103.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218160632|gb|ACK60624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           B4264]
 gi|228603397|gb|EEK60874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|228631459|gb|EEK88093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|228702209|gb|EEL54685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|228711703|gb|EEL63656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|228805509|gb|EEM52100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 450

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|187925441|ref|YP_001897083.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phytofirmans
           PsJN]
 gi|229486478|sp|B2SYX4|MURC_BURPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187716635|gb|ACD17859.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 87/437 (19%), Positives = 137/437 (31%), Gaps = 67/437 (15%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPEN 116
           I  A     GA A+VVS+A    +       +  I +V   R   L+       G     
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I      S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH+D +    A        F 
Sbjct: 165 DASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT-IS 294
             LP    A++  DD   KE++        R          +    V A   K   T + 
Sbjct: 205 HRLPFYGIAVLCVDDPNVKEILPFVSKPIIRYGF--APDAQVRAVNVKAHDGKMHFTAMR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    D +  LPGE  V NAL A  +   + +  A +   L   + V  RF+  G    
Sbjct: 263 EDAAPIDIVLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPV 322

Query: 355 --------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                      +  DY H    +   +   R    GR  +V      R    R       
Sbjct: 323 VSEGKASGAYTLVDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFV 381

Query: 407 LDLA--DIAIVTDDNPRSEDP------EKIRAEIIHG-------IPGFIEKGNRIEAIRT 451
             L+  D  ++T+     E P        +   +          +    E  + + A+  
Sbjct: 382 KVLSTVDALVLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAV-- 439

Query: 452 AIEMLNKQDVLVVAGKG 468
               +   DV++  G G
Sbjct: 440 ----VRDGDVVITMGAG 452


>gi|95930733|ref|ZP_01313466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133213|gb|EAT14879.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 448

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 130/412 (31%), Gaps = 57/412 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGK 112
           GH     A+ Q A+ IVVS      +   +  I    P+   V+   + L+         
Sbjct: 59  GHD---DAVFQQADLIVVSPGVPLTVPVLAKAIDRGIPVWGEVEYASRHLT--------- 106

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++A+TGT+GKS+    V Q+ +  G   F  G                        
Sbjct: 107 --APVIAITGTNGKSTTTELVGQMLRGCGKRVFVGGNIGVPLI----------------- 147

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                + Q V +V VE SS  L+   +D +        N+  DH+D +    AY  AK  
Sbjct: 148 ---EAAGQDVDYVVVELSSFQLET--IDQLHPRYALMLNVSVDHLDRYPDMAAYVAAKKA 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +F      +  A++  +D     ++    +   R  S     + I   +       +   
Sbjct: 203 IFANQTADD-IAVLNGEDELVMAMVPGIDSRPVRFSSQRLLEQGISFTQGTIHWCNKGEQ 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 +        G   + N + A    +  G D     +   +   +P R   V T 
Sbjct: 262 CCFNTDELML----SGLHNIENVMAALVPVLLEGCDPEQAWQAACRFTGLPHRMVLVRTL 317

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +              S+E  +  +        + +   G D+    R I   +   +  +
Sbjct: 318 NGVRWYNDSKGTNLGSVEKSVGGLSA-----PVTLIAGGKDKGGDYRDIRSALQGRVTAL 372

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLV 463
            ++            +  +    +       +  +A+  A ++  +   V++
Sbjct: 373 VLIGQ-------AADLMEQAWGDLCPIYRAESMEQAVDVAHKVTPSPGQVVL 417


>gi|290956552|ref|YP_003487734.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646078|emb|CBG69171.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
          Length = 461

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 141/411 (34%), Gaps = 44/411 (10%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA      + +       P++   +        A  + G  P   +AV GT G
Sbjct: 70  ATCVVVSSAIRADNPELARAAELGIPVVHRSD------ALARLMDGLRP---IAVAGTHG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +          +  +G      S+A    L  P    L               
Sbjct: 121 KTTTTSML----------AVSLGELGLKPSYAIGGDLDVPGSNALHGD-----------G 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +                    N+  DH   + +    + +       ++P  +  I
Sbjct: 160 EIFVAEADESDRSFHKYAPEVAIVLNVELDHHANYASMDEIYASFETFAGRIVPGGTLVI 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             + D      +    +    V     +   + +  V A   K +VT+ ++G++  F   
Sbjct: 220 --SADHEGARELTSRLSGVRVVTYGEREDADVRVLSVVAQGLKSEVTVLLDGQEITFAVS 277

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG    +NA+ A    +A+G+ +A +   L     V  R +  G  +RG ++   YAH 
Sbjct: 278 VPGRHYAHNAVAALAAGVALGVPAAELAPALAAYTGVKRRLQLKG-EARGVQVIDSYAHH 336

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +   L+ +R+      I+V        R Q     MG+    LAD ++V D  P  E
Sbjct: 337 PTEMTADLEAMRSAAGDARILVVFQPHLFSRTQELGTEMGQSLA-LADASVVLDIYPARE 395

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DP      E I A             ++ E   T   M    D+++  G G
Sbjct: 396 DPIPGVTSELIIAAARSAGADVTALHDKAEVPGTIAGMAKPGDLVLTMGAG 446


>gi|91201183|emb|CAJ74243.1| similar to UDP-N-acetylmuramoylalanine D-glutamate ligase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 476

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 124/415 (29%), Gaps = 48/415 (11%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           G   D   FI        + ++VS A     +       +  PI    +T        + 
Sbjct: 80  GEHRD-VDFINT------DMVIVSPAVPGDSKFIQIARENGVPI----DTE------MNI 122

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P   + VTG++GKS+  + +  I Q++    +  G                   +
Sbjct: 123 FFKLCPAFTIGVTGSNGKSTTTTLIGDILQQTSNKIWVGGNIGK--------------SL 168

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L       +      V +E SS  L+              TN+  +H+D H+   +Y +
Sbjct: 169 LLQLEEMKPADI----VVLELSSFQLESLSSIKKSPCISIVTNISPNHLDRHKDIDSYIH 224

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +      +   AI+  DD   +   K  +       +          +    + + 
Sbjct: 225 AKKNIILH-QKQSDSAILNYDDTELRTWGKECYGRVLWYSTQQPVENGAFRENEHIVISI 283

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              TIS+          LPG+  ++N L A+      G +   + + +     +  R EF
Sbjct: 284 DGNTISIPCVS---KIKLPGDHNLHNVLAASCATYLHGANKQTIEKTVTSFCGLEHRLEF 340

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A T  S    + + +         V   GG            I  +
Sbjct: 341 VREAKGIRYYNDSKATTPESAIAAIMSFKN-------SVLIAGGYDKGSDFEEFAAICSN 393

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                ++        +      +     P         +A +TA  +     VL+
Sbjct: 394 YCKAVVLIGKTANKIEELISLKKGEKEYPHVCVANTLKDAFQTANTLTTPGGVLL 448


>gi|257438505|ref|ZP_05614260.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium prausnitzii
           A2-165]
 gi|257199084|gb|EEU97368.1| UDP-N-acetylmuramate--alanine ligase [Faecalibacterium prausnitzii
           A2-165]
          Length = 476

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 84/270 (31%), Gaps = 11/270 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        N+  DH+DY+ +      A  R            I    D  +   +    
Sbjct: 198 LTPYMSVVLNIDNDHLDYYGSMGELKFAFKRFALM----THFMIFANADDKNTMDVMYTL 253

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAA 319
           +   R  ++     +  +          +  +      +       +PG   +YNAL   
Sbjct: 254 DRRVRTFAIDNAADYRAVNVQEYKPGFFEFDLKEWDTNELGHIRLAVPGRHNIYNALAMC 313

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +C ++G+                 RFE  G    G  +  DYAH    +   L   + +
Sbjct: 314 AVCRSVGLTVEECANAALNFKGAGRRFEVYG-ECNGAVVVDDYAHHPTEIRATLNTAKEL 372

Query: 380 TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGI 436
              R+I V       R +        +   + DI ++T      E  DP    A++   I
Sbjct: 373 GYNRVIAVHQPFTYSRTKMLFNDFVDV-FKIPDITVITPIMGSREPNDPTITSAKLAAQI 431

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           P  +   +   A     +   + D+++  G
Sbjct: 432 PNSVLVDSLEAAADWVKQNAREGDLVITLG 461


>gi|163841228|ref|YP_001625633.1| UDP-N-acetylmuramate--L-alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
 gi|189029025|sp|A9WRD7|MURC_RENSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|162954704|gb|ABY24219.1| UDP-N-acetylmuramate--alanine ligase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 465

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 148/426 (34%), Gaps = 45/426 (10%)

Query: 51  GNKED-GHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH     A     GA+ +V+S+A    +      + T  L V +  + L+   +
Sbjct: 53  GASVHAGH-----AAQNVAGADTVVISTAIRANN-PELEFARTQGLRVLHRSEALAAAMA 106

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTP 165
                  + ++AV GT GK++  + +  + + +GL       G                 
Sbjct: 107 ------QDTVVAVAGTHGKTTTTAMIAVLLREAGLDPSFAVGGTV--------------- 145

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                    +   +       +  +            +      TN   DH+D++ T +A
Sbjct: 146 --------PALGVNAAHGAGGIFVAEADESDGSFLNYRPQIAVVTNAEPDHLDHYGTAEA 197

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A  + F  L+P +   +   DD  +  + K+A   G RV++ G              
Sbjct: 198 VMEA-FQSFIGLIPADGLLVACTDDDGALALAKQAAARGTRVVTYGRSAAAEVWLINDGA 256

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           H   +    +  +       +PGE    NAL A  + + +G+++   L  L        R
Sbjct: 257 HRAIEFITPIGPQRLVLELQVPGEHNALNALAAFAVALELGVEAEQALSALAGFTGAARR 316

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           FEF G   RG R++ DYAH    +   L   RT+  G  ++V        +         
Sbjct: 317 FEFKGQ-VRGIRVFDDYAHHPTEVRAALTAARTVADGHHVLVLFQPHLFSRTHEFAAEFA 375

Query: 406 ALDLA-DIAIVTDDNPRSEDPEKIR--AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           A     D  +V D  P  EDP        I         + +R +AI+  +      D++
Sbjct: 376 AALSLADSIMVLDVYPAREDPIPGVTGELITEANAKLTFQPDRAKAIQELVARTANGDIV 435

Query: 463 VVAGKG 468
           +  G G
Sbjct: 436 LTVGAG 441


>gi|149175312|ref|ZP_01853934.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
 gi|148845921|gb|EDL60262.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
          Length = 486

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 75/442 (16%), Positives = 142/442 (32%), Gaps = 61/442 (13%)

Query: 51  GNKED-GHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLF 105
           G +   GH   F+P+    G   +V S A  L +           P     +  + L   
Sbjct: 72  GYRVHQGHDMRFVPE----GTSVLVYSPAIGLANPERRFAQRMGIPQF---SYAQMLGHL 124

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                    +  + + GT GKS+  +    I Q +G+                     +P
Sbjct: 125 MR------QKQGVCIAGTHGKSTTTALTAFILQNAGV---------------------SP 157

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           S +  A+  S   +      ++  +     Q     +     + TN+  DH DY + Q  
Sbjct: 158 SAVIGAELCSQNLNGWAGEGALFVAESCEYQRSFLNLFPFYAAITNIEPDHFDYFKNQDD 217

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A       +    +  +             R             +G       + + 
Sbjct: 218 MTTAYAEFVARIPKGGTLVLPST---CMGLQKLREACKAKISTFSLERGADWWATDIKST 274

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               +  +  +G+ F +      G+  V NA+VAA LC   GID+  + E + +   +  
Sbjct: 275 AFGLRFRLFHQGEYFSEISLQKTGKHNVSNAMVAAILCHTAGIDAEQIREGIYEFPGIRR 334

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R+E +G + +G  ++ DYAH   +++  LK +R     R I          + +  +M  
Sbjct: 335 RYERMG-SYKGLTLFDDYAHHPTAIQATLKMLRQEYPDRRIWCLYEPHQVSRTQ-ALMDY 392

Query: 405 IALDL--ADIAIVTDDNPRSEDPE--------KIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            A     AD  ++       E           ++   I+          +  + + T   
Sbjct: 393 YAGSFQQADRILIAPVYAAREKLAEEPVETSKELVRRILLHNASVSFSSSLDQMLSTLET 452

Query: 455 MLNKQDVLVVAGKG------HE 470
                D+++  G G      HE
Sbjct: 453 EAQSGDIIITMGAGEINRIHHE 474


>gi|268318240|ref|YP_003291959.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262335774|gb|ACY49571.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 479

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 133/412 (32%), Gaps = 43/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA   Q+   T+ +    + +    + L       +G      + V GT GK+
Sbjct: 76  ADVVVYSSAVRPQENPETLEALRRRIPLIPRAEMLGELMRMKFG------IGVAGTHGKT 129

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +    G     I     +++F  +        I +                 
Sbjct: 130 TTTSMVGLVVSEGGFDPTII-VGGKVAAFESNAVAGEGDIIVI----------------- 171

Query: 188 EASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                  +  R    +       T++  +H+D ++       A  R F   +P    AI+
Sbjct: 172 ----EADEYDRTFLRLTPTLAVVTSIEPEHLDIYRDLDDL-MAAFRQFASSVPFFGAAIL 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   + ++ +                     +     ++  V +  E         +
Sbjct: 227 CLDDPNVQALVGQLDRRVRTYGLARQAEIRAENVQFEGFGSRFDVLLQGEP-LGTIQLQV 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  + + + I    +   L +   V  RFE +G    G  +  DYAH  
Sbjct: 286 PGLHNVRNALAAVAVGLELDIPFEAIQAGLARFTGVRRRFERLG-EVHGVLVIDDYAHHP 344

Query: 367 NSLEMI-LKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +          +   R++ VF      R +  +    +  +D AD+ +VTD     E 
Sbjct: 345 TEIRATLEAAATAMPDRRLVAVFQPHLYSRTRDFQEDFARSFVD-ADVLVVTDVYGAREA 403

Query: 425 P------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           P      E+I       G         R +     +E  L   D ++  G G
Sbjct: 404 PIPGITGERIAELARRFGHRDVHYVPERRQIPGYLLEHVLRPGDAVLFMGAG 455


>gi|260576888|ref|ZP_05844871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
 gi|259020925|gb|EEW24238.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
          Length = 466

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 130/418 (31%), Gaps = 53/418 (12%)

Query: 61  PQAIAQGAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--P 114
            QA   G  A++ S      Y   +          + V ++   F   FA+  +      
Sbjct: 61  AQAFD-GVAALITSPGIPHLYPAPNKVIARAYEAGVPVDNDIGLFFRSFATPDWDNFETA 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTG++GKS+  + +  I + +G  +   G                   + L    
Sbjct: 120 PRVVCVTGSNGKSTTTALIHHILEVAGRPTQMAGNIGRGVLDIDPAVDGEVVVLEL---- 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          SS+  D  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 176 ---------------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHNGMGGYFAAKRRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E  P  +       D      +      G     V        L++       ++  ++
Sbjct: 219 AEGGPDRAVI---GVDEVEGRYLAGQLAEGAADDRVIRISSGTKLEEFAWSVFARKGFLA 275

Query: 295 VEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +       D   +  LPG     NA  A   C ++G+   L+ +       +P R +
Sbjct: 276 EWRRGKQVASIDLRGVAGLPGAHNHQNACAAYAACRSLGVGPKLIEQAFHSFAGLPHRSQ 335

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG  +    +    A   +S    L+    I   R I          +   P +G +A 
Sbjct: 336 TVGEKAGVRFVNDSKATNVDSAAKALQAFPRI---RWIAGGMGKDGGIKALVPHLGSVA- 391

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                A +   + R          +  G   +        A+  A       +V+++A
Sbjct: 392 ----KAYLIGHSARD-------FALELGATPYEICETMERAVAAATRDAQAGEVVLLA 438


>gi|300864111|ref|ZP_07109007.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
 gi|300337877|emb|CBN54153.1| cyanophycin synthetase [Oscillatoria sp. PCC 6506]
          Length = 906

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 17/139 (12%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH ++S E +   +R    G  I V G  GDR      
Sbjct: 727 QTPGRMNL--FNLGTYHALVDYAHNAHSYEALGSFVRN-WPGFHIGVVGGPGDRRDEDFI 783

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIP-------------GFIEKGNRI 446
            +GK++  + D  IV +D  R   P    AE I  GI               +    +  
Sbjct: 784 TLGKLSAKIFDRIIVKEDADRRGRPAGSAAELISQGIREALNSQENGKSKVEYESILDET 843

Query: 447 EAIRTAIEMLNKQDVLVVA 465
            A+  A++      ++V+ 
Sbjct: 844 TAVNKALDNAPPGSLVVIL 862


>gi|226357935|ref|YP_002787675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (MurE synthetase) (UDP-N-acetylmuramyl-tripeptide
           synthetase); Mur ligase family protein; Cyanophycin
           synthetase [Deinococcus deserti VCD115]
 gi|226320178|gb|ACO48171.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (MurE synthetase)
           (UDP-N-acetylmuramyl-tripeptide synthetase); putative
           Mur ligase family protein; putative Cyanophycin
           synthetase [Deinococcus deserti VCD115]
          Length = 724

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 133/379 (35%), Gaps = 37/379 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT+GKS+ A  V  I   +G +    G T+T   +  D R+ +        A   L
Sbjct: 330 LALTGTNGKSTTARMVAHILAHAGHTV---GFTNTSGVYVADKRIHSGDATGPKSARMVL 386

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               VT   +E +  GL +  L   +   G+  N+  DH+           A+++     
Sbjct: 387 RHPAVTVAVLETARGGLLREGLGFDRADVGAVLNVKSDHLGLGGVNTVRDLARVKSLVVR 446

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---------------- 281
           +   S   +   D      M+R       + S+        L+                 
Sbjct: 447 VVASSGLSVLNADDPLTLGMRRVARGRIALFSISGLDGNKALRDHIDAGGLAVVCEPQAD 506

Query: 282 --VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA----LVLEH 335
             V A+++  +    +   D          F V NAL AA +C+ + +        +   
Sbjct: 507 GDVIAVYDGGERQSLMRAADIPATLGGLARFNVENALAAAAMCLGLDLTLEVIRSALTTF 566

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGD 393
                  PGR      ++ G R+ +DYAH  ++L      +  + S  GR+I +    GD
Sbjct: 567 TSSFEQSPGRLNV--HDAHGFRVILDYAHNPDALAAQRALLHRLRSPGGRLIGMVSVPGD 624

Query: 394 RDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNR------- 445
           R       +G+IA    D  +  +  + R     +  + +  G         R       
Sbjct: 625 RRDDDIREVGEIAAGTFDELVFREGPDGRGRPRGETMSLMAEGARSAGFASERIHLVLEE 684

Query: 446 IEAIRTAIEMLNKQDVLVV 464
            +A+   + +    D+ V+
Sbjct: 685 SDAVDATLNLARPGDIAVI 703


>gi|210623279|ref|ZP_03293696.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
 gi|210153680|gb|EEA84686.1| hypothetical protein CLOHIR_01646 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 133/407 (32%), Gaps = 41/407 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V ++A    +           L+V N   FL            +N +AV+GT GK+S  
Sbjct: 64  VVYTAAIHPDNEELMAARKKNKLIV-NRAAFLGQIMREY-----KNSIAVSGTHGKTSTT 117

Query: 131 SFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +  I +      +  +G   ++         +        + +    +          
Sbjct: 118 SMLSAIFEYADLDPTILVGGNLSMIGGNVKIGHSNHFITEACEYVDSFLNFN-------- 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+DY         A    F +LLP +   II  D
Sbjct: 170 --------------PKISIVLNIEEDHLDYFSGIDEIK-ASFNKFGKLLPPDGYFIINGD 214

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  + +++        +  S       I   +   +       +        F   + G 
Sbjct: 215 DENTADILYDVKATVIKYGSNKDNDAVIKNIEFDELGCGIFDLVYNGEDLGKFELSVRGL 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             +YNA+ A    I  GID   +  +++K   V  RFEF G    G  I  DYAH    L
Sbjct: 275 HNIYNAVAAIITSIVSGIDVETIKRNIKKYRGVGRRFEFKG-KYNGATIVDDYAHHPTEL 333

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE-DPE 426
           +  L   + I   R+  +F       + K  ++ + +     AD  IVTD     E DP 
Sbjct: 334 KSTLSTAKRIKKNRLWCIF-QPHTYSRTK-SLLNEFSDAFFAADKVIVTDIYAARETDPG 391

Query: 427 KI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I       ++ H            + +    + +   D ++ AG G
Sbjct: 392 DIHSTDLVEKLYHNNIDAKYIKEFDDIVEYLADNVEPDDFVITAGAG 438


>gi|71909109|ref|YP_286696.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
 gi|109892702|sp|Q47AA5|MURC_DECAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71848730|gb|AAZ48226.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
          Length = 463

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 70/417 (16%), Positives = 131/417 (31%), Gaps = 43/417 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+A+V+S+A    +          I VV    + L+       G      +A+ GT G
Sbjct: 63  AGADAVVISTAVKADNPEVIAARERKIPVVPRA-QMLAELMRLKSG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  I    G+    +     +++   + RL +   +      S  S       
Sbjct: 116 KTTTTSLVTSILAEGGIDPTFV-IGGRLNAAGANARLGSGDFLVAEADESDASFLF---- 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH++ +        +    F   LP    A+
Sbjct: 171 ----------------LSPVISVVTNIDADHMETYGHDFERLKSAFVDFLNRLPFYGVAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  DDA  ++++ R                   ++           V ++          
Sbjct: 215 VCGDDANIRDILPRVPKQIITYGLSNECNFHAENIVADNGQMRFDCVRVNGTTSRLSITL 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYV 360
             PG   V NAL A  +   + +  A +++ L +   V  RF+  G  +        +  
Sbjct: 275 NTPGMHNVLNALAAIAVATEVQVSDAAIVKALAEFKGVGRRFQRYGEVALPAGGSFTLVD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDD 418
           DY H    +   L   R    GR  +V      R    R         L+  D   + + 
Sbjct: 335 DYGHHPVEMAATLAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVLSTVDALCLAEI 393

Query: 419 NPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E P        +   +   G    +   +     +T +++    DV++  G G
Sbjct: 394 YAAGEAPIVAADGRSLARALRVSGKVEPVFVEDIAAMPQTIMDVARDGDVVLCMGAG 450


>gi|318057552|ref|ZP_07976275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actG]
 gi|318079765|ref|ZP_07987097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actF]
          Length = 474

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 124/374 (33%), Gaps = 46/374 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +G  +  +G               
Sbjct: 102 ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLSAILEAAGHRTAAVGNIG------------ 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 ++   + L+ +    ++VE SS+ L       ++  + +  NL  DH+D+H + 
Sbjct: 150 ------VSLLDAVLAEEPYDVLAVELSSYQLHW--APSVRPHSAAVLNLAPDHLDWHGSM 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  A  +       + +     AD A  + V       GCR +             V 
Sbjct: 202 AAY--AADKGRVYEGNQVACVYNSADPATEELVRAADVEEGCRAIGFTLGTPRPSELGVV 259

Query: 284 AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +   +  +    +             P    + NAL AA L  A G+ +  V   L  
Sbjct: 260 EGYLVDRAFVPDRAQQAQELAEVADVDPPAPHNIANALAAAALARAFGVPATAVRAGLRA 319

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R E V T      +    A  +++ E  L     I       V+  GG      
Sbjct: 320 FRPDPHRIEHVATIDGVAYVDDSKATNTHAAEASLAAYEPI-------VWIAGGLAKGAT 372

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRI------EAIRT 451
              + + A       ++        D   IR  +    P       +R       EA+R 
Sbjct: 373 FDELVQGAAKRLRAVVL-----MGRDRALIREALARHAPNVPVVDLDRADTGAMSEAVRE 427

Query: 452 AIEMLNKQDVLVVA 465
           A  +    D +++A
Sbjct: 428 AAGLAESGDTVLLA 441


>gi|227824967|ref|ZP_03989799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acidaminococcus sp.
           D21]
 gi|226905466|gb|EEH91384.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acidaminococcus sp.
           D21]
          Length = 459

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 96/289 (33%), Gaps = 18/289 (6%)

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                ++V+ E SS  L+               N+  DH + H   + Y NAK ++F   
Sbjct: 152 HMGPESYVAAELSSFQLEGMTTF--HPQIACIVNITPDHFERHGNMENYINAKAQIFAHQ 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             ++   + Y ++       K A  A  RV     + K      +   +    V  S   
Sbjct: 210 TAEDVLVLNYDNEPD----RKLASRAASRVFFFSTEEKLEKGAWIEEGNFVFDVDGSKHV 265

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G     N L A   C   G+    + + L+    V  R E+V T      
Sbjct: 266 VCKVSDLKIFGAHNEQNVLAAILCCHFAGVTVENMEKVLKAFEGVEHRLEYVTTIKGVPY 325

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                A  ++S    ++  +       +++   G D+       M ++     D  I+  
Sbjct: 326 YNDSKATNTDSAVKAIEAFKE----GHVILLAGGHDKMTDLTEFM-QVTARKTDALIL-- 378

Query: 418 DNPRSEDPEKIRAEIIH-GIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
                E  ++        G+   +   G+  +A+R A +M     V+++
Sbjct: 379 ---LGEARQRFLKAAQKNGVKNIVMCDGSFEDAVRLAYDMAKPPQVVLL 424


>gi|224542359|ref|ZP_03682898.1| hypothetical protein CATMIT_01538 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524741|gb|EEF93846.1| hypothetical protein CATMIT_01538 [Catenibacterium mitsuokai DSM
           15897]
          Length = 401

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 123/377 (32%), Gaps = 25/377 (6%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+ L            +N++ V GT+GK S  ++++ I    G           I    +
Sbjct: 25  RRILEEL---DINTKQKNMIHVAGTNGKGSTVNYLRSILNAHGYHVGTFTSPYMIKHNDR 81

Query: 159 DNRLTTPSPIY--LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                 P      LA    Y +     ++S+      +         L            
Sbjct: 82  IRIDDQPISDEDLLALINKYETVIEEKNLSMFEIDVLIMLDYFSSHDLDYRIIECGIGGA 141

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV------ 270
            D     Q   +A   +  + L +  P++    +     + +  +     V  +      
Sbjct: 142 NDKTNVIQPIISAITNIGNDHLDQIGPSLYDVINEKMGIIKEGQYFITSEVEGMVLARLQ 201

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                      V   +   +       +D  F     G +QV NA +A  +   +     
Sbjct: 202 EQCDAMGATMVVVPEYQVSRYPFHFRYRDMAFTLEKQGVYQVANARLALTIANKLINLDE 261

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
              E   +  V  GRFE    N  G ++ +D AH ++ ++ +L  ++ + +   + +F  
Sbjct: 262 KTTEKAIEEAVWYGRFE--MMNVAGHQVILDGAHNTDGVKALLTTMQYMRTKDTVFIFSG 319

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
             D+D      M ++  +      +T  N  R+ D E  R+             +  EAI
Sbjct: 320 LKDKDVD---EMIELIDEAGYPIYLTSFNDERASDLEDYRS-----FSTVTVVPHFAEAI 371

Query: 450 RTAIEMLNKQDVLVVAG 466
           + A+    K D LV+ G
Sbjct: 372 KVALL---KHDQLVITG 385


>gi|225077400|ref|ZP_03720599.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
 gi|224951284|gb|EEG32493.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
          Length = 445

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 142/420 (33%), Gaps = 54/420 (12%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAELQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F                   + +            +      F    +     
Sbjct: 204 AHTKAKIFRG--------------DGVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWL 249

Query: 287 NKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            ++   +  + +D      +P +      N + A  LC A+G+    +LEH++    +P 
Sbjct: 250 ERETGRLKQDDEDLIATQNIPLQGLHNAANVMAAVALCEAVGLQREALLEHVKTFQGLPH 309

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G  +    I         +    +  ++       + V   G  + Q   P+   
Sbjct: 310 RVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDA 364

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 365 LKDK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|304321497|ref|YP_003855140.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
 gi|303300399|gb|ADM09998.1| UDP-N-acetylmuramate--L-alanine ligase [Parvularcula bermudensis
           HTCC2503]
          Length = 473

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 137/417 (32%), Gaps = 56/417 (13%)

Query: 70  AIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+VVS+A      + +A    + P++   +    L            +  + V GT GK+
Sbjct: 79  AVVVSTAIGQDNPELAAARARHVPVVRRADMLAELMRL---------KWNVCVAGTHGKT 129

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +    G     +     I+++A + R  T                    + V
Sbjct: 130 TTTSMIGSLLDA-GDLDPTVINGGIINNYASNARPGTGD-----------------WMVV 171

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           EA        RL       G  TN+  +H+D++        A    F   LP    A + 
Sbjct: 172 EADESDGTFIRLPATV---GVITNIDPEHLDHYGDFAGVR-AAFDQFVANLPFYGFAAVC 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---FLF 304
            D    + ++ R  +          Q               +   I  +           
Sbjct: 228 LDHPEVQALVGRVTDRRLITYGFNPQADVRAENLDPTEEGSRFDIIFRKDDIVRLEGITL 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG   V NAL AA +   +G+    + +   +   V  RF  VG   RG RI  DY H
Sbjct: 288 PMPGRHNVLNALAAAIVAREMGVPEDAIRDGFARFRGVRRRFTEVG-KYRGARIIDDYGH 346

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               +   L   RT+  GR+I V      R    + +          AD+ +V D  P  
Sbjct: 347 HPVEIAATLSAARTVARGRVIAV--MQPHRYTRLQQLFDAFCGCFNDADLVMVGDVYPAG 404

Query: 423 EDP------EKIRAEII-HGIPGFIEKGNRIEAI----RTAIEMLNKQDVLVVAGKG 468
           E P        +   I  HG  G        EA     +   + L   DV++  G G
Sbjct: 405 EMPIEGMDKRALADGIARHGHRGVEVI----EAWGGLSQRLRDELQDGDVVICLGAG 457


>gi|261886110|ref|ZP_06010149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 277

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 105/293 (35%), Gaps = 45/293 (15%)

Query: 33  VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI 92
           ++ +S+  ++G  F  +  N      F   AI  GA  I             T +    I
Sbjct: 11  ITDNSKTCESGCFF--LKSNSN--AKFENDAIKSGAIII-------------TPKRAKTI 53

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS- 151
           L +D+                   ++ +TGT+GK++ A  +    +  G      G    
Sbjct: 54  LNLDD----------------GIRLIGITGTNGKTTTAFAIAFGLRSLGYKVGISGTRGA 97

Query: 152 -TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   D  LT+   +     +      G  +  +E SSH + Q+R++G+      FT
Sbjct: 98  FICDQQIADQGLTSCQILETLSYIKQAKESGCRYFVMEVSSHAIAQNRIEGLNSALKVFT 157

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +DH+DYH++     +   R+       +SP +I  DD   +   K       +    
Sbjct: 158 NVSQDHLDYHKS----CSEYARVESSFFDDDSPKLISGDDESIRFNHKNTMIYWLKNSDA 213

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
            +  +    K         +  I  + +  +    L G+F +YN L A G   
Sbjct: 214 SFFVENYDFKG------GIKANIKSKNETANLQSHLQGKFNLYNLLAAIGSIK 260


>gi|254475825|ref|ZP_05089211.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
 gi|214030068|gb|EEB70903.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
          Length = 465

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 153/473 (32%), Gaps = 66/473 (13%)

Query: 12  PELINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEA 70
            E++  L    +Q  + K ++++  SR  + G  IFV            +  A    A  
Sbjct: 28  AEVLLNLGYV-VQGSDLKASKIT--SRLEKLGAQIFVGQRAEN------LEDA----AVV 74

Query: 71  IVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           ++ S+      +         P++        L            ++ +A+ GT GK++ 
Sbjct: 75  VISSAIKPGNPELDEARNRGLPVVRRAEMLAELMRL---------KSNIAIAGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + + ++    G     I     I ++  + R+                      + VEA
Sbjct: 126 TTMMAELMVA-GHFDPTIVNGGIIHAYGSNARMGQGE-----------------WMVVEA 167

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                  +RL          TN+  +H+++        N     F   +P    A+   D
Sbjct: 168 DESDGTFNRLPATI---AVVTNIDPEHMEHWGDFDTLRN-GFYEFVSNIPFYGIAVCCTD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDFLFPLP 307
               + ++ R  +          Q     +         +      + +        P+P
Sbjct: 224 HPEVQALVGRITDRRVVTYGFNTQADVRAVNLTYKAGVAHFDIQLQAEDRVIEGCTLPMP 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL A  +   +G++S+ +   L     V  RF  VG    G  I  DY H   
Sbjct: 284 GDHNVSNALSAVAVARHLGMNSSEIRAALAAFGGVNRRFTKVG-EVDGVTIIDDYGHHPV 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP 425
            +  +LK  R    GR+I V      R      +          AD+  + +     EDP
Sbjct: 343 EIAAVLKAARQACDGRVIAV--HQPHRYSRLSSLFDDFCGCFNEADVVAIAEVFAAGEDP 400

Query: 426 --EKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                R +++ G+           +++ +     R   E     D++V  G G
Sbjct: 401 IEGAGRDDLVAGLIRHGHRHARALLDEPDLE---RLVREQARPGDMVVCLGAG 450


>gi|240128804|ref|ZP_04741465.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268687186|ref|ZP_06154048.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627470|gb|EEZ59870.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 506

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVI----PRALMLAELMRFRDG------IAIAG 150

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 151 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 208

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 209 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 248

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 249 GKAFLCVDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 307 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 366

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                   DY H    +   L   R     + +V+        R +       K+     
Sbjct: 367 GGTALLVDDYGHHPVEMAATLAAARGAYPDKRLVLAFQPHRYTRTRDLFEDFTKVLNT-V 425

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +  +  + +L   DV++
Sbjct: 426 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVL 485

Query: 464 VAGKG 468
             G G
Sbjct: 486 NMGAG 490


>gi|158426180|ref|YP_001527472.1| UDP-N-acetylmuramate--L-alanine ligase [Azorhizobium caulinodans
           ORS 571]
 gi|172047924|sp|A8HZ95|MURC_AZOC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158333069|dbj|BAF90554.1| UDP-N-acetylmuramate-alanine ligase [Azorhizobium caulinodans ORS
           571]
          Length = 467

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 137/430 (31%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + I  GAE +VVSSA    +          + VV   R+   L+          
Sbjct: 58  GHK--AENID-GAEVVVVSSAIKRDNPELLAARAKRLPVV---RRAEMLAELMRL----- 106

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            ++ +A+ GT GK++  S V  +  + G     I     I+++  + RL     + +   
Sbjct: 107 -KSCVAIAGTHGKTTTTSLVATLLDKGGFDPTVI-NGGIINAYGTNARLGAGDWMVVEAD 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S                          +       TN+  +H+D+ +T      A  R 
Sbjct: 165 ESD--------------------GTFLKLPAEVAIITNIDPEHLDHFKTFDKVQEA-FRT 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F E +P    A++  D    + ++ R  +          Q     +         +   +
Sbjct: 204 FVENVPFYGFAVMCIDHPVVQALVGRIEDRRIITYGENPQADVRLVDVDLRGGITRFGVV 263

Query: 294 SVE------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +       +      P+PG+    NA  A  +   + +    ++E +     V  RF 
Sbjct: 264 FRDRAGTAEHRIDGLKLPMPGKHNALNATAAIAVARELRVPDDRIIEAIGGFGGVKRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G   +G  I+ DY H    +  +L+  R  T G++I V      R      +  +   
Sbjct: 324 RTG-EWKGATIFDDYGHHPVEISAVLRAARAATEGQVIAVV--QPHRYTRLASLFDEFCT 380

Query: 408 DL--ADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNK 458
               AD  IV       E P      E +   +   G           E       +   
Sbjct: 381 CFNDADHVIVAPVYAAGESPVPGADSEHLVQGLRARGHRSVTALKGPEELAGLVAGLAKP 440

Query: 459 QDVLVVAGKG 468
            D ++  G G
Sbjct: 441 GDFVICLGAG 450


>gi|239999603|ref|ZP_04719527.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           35/02]
 gi|240014778|ref|ZP_04721691.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           DGI18]
 gi|240081137|ref|ZP_04725680.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|240113349|ref|ZP_04727839.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|240116304|ref|ZP_04730366.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID18]
 gi|240118591|ref|ZP_04732653.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|240121301|ref|ZP_04734263.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID24-1]
 gi|240124134|ref|ZP_04737090.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID332]
 gi|240126250|ref|ZP_04739136.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494318|ref|ZP_05107489.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268595414|ref|ZP_06129581.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268597248|ref|ZP_06131415.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268599423|ref|ZP_06133590.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268601971|ref|ZP_06136138.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268604302|ref|ZP_06138469.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268682759|ref|ZP_06149621.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268684831|ref|ZP_06151693.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043155|ref|ZP_06568878.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|293398491|ref|ZP_06642669.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
 gi|59718763|gb|AAW90168.1| putative UDP-N-acetylmuramate--alanine ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|193934636|gb|ACF30460.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513358|gb|EEH62703.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268548803|gb|EEZ44221.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268551036|gb|EEZ46055.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268583554|gb|EEZ48230.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268586102|gb|EEZ50778.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268588433|gb|EEZ53109.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268623043|gb|EEZ55443.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268625115|gb|EEZ57515.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012761|gb|EFE04744.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|291610962|gb|EFF40059.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
          Length = 506

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 138/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A   ++    A +    P++     R   L+       G      +A+ G
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVI----PRALMLAELMRFRDG------IAIAG 150

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 151 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 208

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 209 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFY 248

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS-----VE 296
             A +  D  + + ++ +                 I+   +  +  + + T+       E
Sbjct: 249 GKAFLCVDSEHVRAILPKVSKPYATYGLDDTAD--IYATDIENVGAQMKFTVHVQMKGHE 306

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F+ +  +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 307 QGSFEVVLNMPGRHNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPN 366

Query: 357 RIY----VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLA 410
                   DY H    +   L   R     +  +V      R    R +       L+  
Sbjct: 367 GGTALLVDDYGHHPVEMAATLAAARGAYPEKR-LVLAFQPHRYTRTRDLFEDFTKVLNTV 425

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D  ++T+     E+P        +   I   G    I   N  +  +  + +L   DV++
Sbjct: 426 DALVLTEVYAAGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVL 485

Query: 464 VAGKG 468
             G G
Sbjct: 486 NMGAG 490


>gi|154249900|ref|YP_001410725.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153836|gb|ABS61068.1| UDP-N-acetylmuramate--alanine ligase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 451

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 112/341 (32%), Gaps = 45/341 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P    AVTGT GKS+  S +       G   +             + R            
Sbjct: 106 PFRGFAVTGTDGKSTTTSMLANSLIDLGADPYVFLGALHNKLEHGNYRHGKSDI------ 159

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        ++ S  G +  R           TN+  DH++ +Q+ + Y+++   L
Sbjct: 160 ---------AVYELDESQPGYELFR-----PEFLIITNIREDHVENYQSLEHYYSSFETL 205

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +      + A                       ++ G       L +       Q VTI
Sbjct: 206 IKNSKFVVTFA---------------DEKKFKGNVTFGVYSGDFKLVERKQEGFYQTVTI 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +  F  P+PG     NAL    L  +IG +   VL+  E   +   RF     N 
Sbjct: 251 FTPYGERKFFLPVPGYHNALNALAVISLLSSIGYNIDKVLDSFEDFRLPGRRFNVSYDNP 310

Query: 354 -RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLA 410
            R   I  DYAHT++ +E++LK  R +   R IV+        + KR      +I    A
Sbjct: 311 SRKITIVDDYAHTADEIEVLLKTSREVYPERKIVLIFQPHRYTRFKREAERFKRILQS-A 369

Query: 411 DIAIVTDDNPRSE-----DPEKIRAEIIHGIPGFIEKGNRI 446
           D   +T+     E       + I +EI   I    +  +  
Sbjct: 370 DEIYITEIYGAFETKNGVTAKNIVSEIAKAI-FVEKIEDLK 409


>gi|222530360|ref|YP_002574242.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254763736|sp|B9MND8|MURC_ANATD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222457207|gb|ACM61469.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 455

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 103/271 (38%), Gaps = 16/271 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH+DY +   +  N+  + F + +P     ++  DD   K+++ + +     +
Sbjct: 174 VILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVVNYDDKNVKDIINQLNTQIICI 232

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +      F         + +  V  + +         +PG   VYNAL A  +   +G+
Sbjct: 233 STKEKTDIFADNISCSDGYYEFDVKNNNDEILAHIKLNIPGFHNVYNALAAFAVASKLGV 292

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +S  + + L +      R E VG    G  +Y DYAH    ++  L  ++ I+ G+++ +
Sbjct: 293 ESITIEQALSEFRGASRRLEKVG-EFNGIYLYDDYAHHPTEIKATLATLKKISEGKVLAI 351

Query: 388 FG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR---------SEDPEKIRAEIIHGIP 437
           F      R +       + +L LAD  IVTD             SE       EI     
Sbjct: 352 FQPHTFSRLKTLLNEFAE-SLQLADKVIVTDVYAAREKNVFGITSEKLYLKLKEIGIDCE 410

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +       A++   K D++   G G
Sbjct: 411 YISNFEDIA---CYAVKEAKKGDIIATIGAG 438


>gi|295107917|emb|CBL21870.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus obeum A2-162]
          Length = 459

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 119/382 (31%), Gaps = 48/382 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L               +AV GT GK++  S +  I    G     I     + +   +
Sbjct: 101 QLLGQIMRNYD-----TSIAVAGTHGKTTTTSMLSHIL-LKGECDPTISVGGILPAIGGN 154

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            R+       L +A  Y +S      ++                       N+  DH+D+
Sbjct: 155 IRVGQSETF-LTEACEYTNSFLSFFPTLGI-------------------ILNMDADHLDF 194

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            +      ++  R F ELLP +   II AD    + V +                     
Sbjct: 195 FKDIDDIRHS-FRKFAELLPADGALIINADTPKYEMVAENLPCKVITYGLEHDAEYTASD 253

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                  +     +            +PG   V NAL +      + +D+ ++   L+  
Sbjct: 254 ITYDEFGHPTFHVLHNGEDIGICSLKVPGIHNVSNALASIAAGRLLDLDNEVIFAGLKDF 313

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGK 398
                RF++ G       I  DYAH    +E  L         +I  VF      R +  
Sbjct: 314 GGTDRRFQYKG-KVGEVTIIDDYAHHPTEIEATLHAAHNYPHKKIWCVFQPHTYTRTKAL 372

Query: 399 RPIMGKIALDLADIAIVTDDNPRSE---------DPEKIRAEI---IHGIPGFIEKGNRI 446
            P   K AL LAD  ++ D     E         D +K   E+       P F E  N  
Sbjct: 373 LPEFAK-ALTLADHVVLADIYAARETDNLGISSADLQKQIRELGTPCEYFPTFDEIEN-- 429

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
                 +E   + D+L+  G G
Sbjct: 430 ----FLLENCTQGDLLITMGAG 447


>gi|325130846|gb|EGC53579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis OX99.30304]
          Length = 445

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 142/418 (33%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A+  G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +         D      MKRA               +          
Sbjct: 204 AHTKAKIFRGDGVQVLNV-----DDAFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGNEDLIATKDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   +A
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATAAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALA 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 GK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|229162848|ref|ZP_04290805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
 gi|228620730|gb|EEK77599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
          Length = 450

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 127/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +            +        ++K               E     
Sbjct: 219 YSVI-NADDADVMALSVNTKGQKVLFSTTKEIEDGAYIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTLNNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFAQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A    +  DV+++
Sbjct: 383 ---PKLVRAAGKAGLDIIESVDTLEEAVGKAYAHSSDGDVILL 422


>gi|75675245|ref|YP_317666.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
 gi|109892715|sp|Q3STS7|MURC_NITWN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74420115|gb|ABA04314.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter winogradskyi
           Nb-255]
          Length = 467

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 139/421 (33%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  NGADVLVVSTAIKRDNPELMAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVATLLDA-GDFDPTVINGGIINAYGTNARLGAGEWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A  +A  R F E +P    
Sbjct: 168 -------------GTFLKLPTDVAIVTNVDAEHLDHFKTFDAVQDA-FRSFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEG 297
           A++  D    + ++ R  +          Q     +               +        
Sbjct: 214 AVMCIDHPVVQAMVGRIEDRRIITYGQNPQADVRLVDLAPNGGGSHFKVMFRNRKTDAAH 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D + P+PG     NA  A  +   +GI  A + + L     V  RF   G    G  
Sbjct: 274 EISDLVLPMPGPHNALNATAAIAVAHELGITDATIRKALAAFGGVKRRFTRTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           +  DY H    +  +LK  R  T GR+I V      R    + +  +       AD  +V
Sbjct: 333 VIDDYGHHPVEIAAVLKAARESTDGRVIAVV--QPHRYTRLQALFEEFCTCFNDADTVVV 390

Query: 416 TDDNPRSEDPEK-IRAE-----IIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            D  P  E P   I  +     +       +       A+   I  +  + D +V  G G
Sbjct: 391 ADVYPAGETPIVGIDRDHFVLGLRAHGHREVVPLPESAALAGIIADLAKQGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|83953981|ref|ZP_00962702.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83841926|gb|EAP81095.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. NAS-14.1]
          Length = 471

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 132/415 (31%), Gaps = 47/415 (11%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +  A   +  PI+        L            ++ +AV GT 
Sbjct: 70  GAAVVVISSAIKPGNPELDAARVAGLPIVRRAEMLAELMRL---------KSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++  + G+    +     I ++  + R+                      
Sbjct: 121 GKTTTTTMVAELLVKGGIDPTVV-NGGIIHAYGSNARMGQGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++              F   +P    A
Sbjct: 163 MVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGDFDTLRK-GFLDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDF 302
           +   D    + ++ +  +          Q     +             +         D 
Sbjct: 219 VCCIDHPEVQALVGKITDRRVMTYGFNTQADVRAVNLHYKAGVAHFDIMFQTEGITIKDC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NA+ A  +   +G+ +  +   L     V  RF  VG    G  I  DY
Sbjct: 279 SLPMPGDHNVSNAMAAVAVSRHLGMKTEEIRAALAGFGGVNRRFTKVG-EVDGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    +  +LK  R  T GR+I V      R         +       AD+  + +   
Sbjct: 338 GHHPVEITAVLKAARQATEGRVIAV--HQPHRYSRLHHHFEEFCACFNDADVVGIAEVYA 395

Query: 421 RSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P +       +   I HG        +  +  R   E     D++V  G G
Sbjct: 396 AGEAPIEGAGRDDLVAGLIRHGHRHARAVQSEDDLARLVREQAGPGDMVVCLGAG 450


>gi|289549278|ref|YP_003474266.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
 gi|289182895|gb|ADC90139.1| UDP-N-acetylmuramate/alanine ligase [Thermocrinis albus DSM 14484]
          Length = 448

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 132/358 (36%), Gaps = 29/358 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +AV G+ GK++  S +  I   +GL    +     +  F  + RL     I      
Sbjct: 106 KEGVAVCGSHGKTTTTSMIAYILHEAGLDPTVL-IGGILQRFNGNARLGKGDFI------ 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          S           +       TN+ R+H+D+++   +   A    F
Sbjct: 159 --------------VSEADESDGSFLKLTPTVAVITNIDREHLDFYKDYDSIRKA-FLEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    +++ ADD    +++   + +             +  K +  +       + 
Sbjct: 204 ANSVPFYGFSVLNADDEGCSQII--PYVSKKHYTYGIQTEAHLMAKNLRLLEGTYSFDVV 261

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             GK+  +    +PG+  V NAL +  + + + +   ++ E LE       R E  G   
Sbjct: 262 WMGKNLGNIHLKVPGKHNVQNALASILVALQMDVSFDVIKEALESFRNAERRLELKGF-Y 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADI 412
           +G  +Y DY H    +  ++K +R +     I++        +    +      L  AD 
Sbjct: 321 KGFPVYDDYGHHPTEIRSVIKAVREMYPDTKILLVFQPHRYSRTYYLLQDFATVLREADS 380

Query: 413 AIVTDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            IVTD  P  E+    + A+ +  I G I   ++ E +  A++ L    V++  G G+
Sbjct: 381 CIVTDIYPAGEENRWHVSAKQLAEISGCIYAPSKEE-VFQAVKRLADNHVILFMGAGN 437


>gi|114773353|ref|ZP_01450557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
 gi|114546287|gb|EAU49198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
          Length = 468

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 140/412 (33%), Gaps = 55/412 (13%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             ++VS      Y              ++V ++   F   FA++ +        ++ VTG
Sbjct: 68  VCLIVSPGIPHLYPAPHPIVLKAWQNGVVVDNDVGLFFRSFATQEWDNFDVMPKVICVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+  + +  + + S       G            +  T   + L            
Sbjct: 128 SNGKSTTTALIAHLLEGSNRKVVVAGNIGRGVLDIPPAQDGTIVVLEL------------ 175

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                  SS+ +D  R   +      F NL  DH+D H     YF AK RLF +  P  +
Sbjct: 176 -------SSYQIDLAR--ALAPDIAVFINLSPDHLDRHNGMGGYFYAKRRLFIDGNPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV--------LSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  D    + ++       +         ++   Q     +        + +    
Sbjct: 227 II---GVDEIEGQFLENQLRQDAKSGEPVISVSVNSKLQNNGWSVFSRKGFLAEWRKGRQ 283

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V   D   +  LPGE    NA  A  +C +IG+   L+ E L     +  R + VGT + 
Sbjct: 284 VASIDLRSMSGLPGEHNHQNACCAYAVCRSIGLAPKLIEEKLNSYVGLTHRCQTVGTFNG 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIA 413
              +    A   ++ +  L   ++I    + +V G   +      +P   +I        
Sbjct: 344 VMYVNDSKATNVDAAKKALLAFKSI----LWIVGGESKEAGVLPLKPYFNRIKKAY---L 396

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I T       D   +  ++      F+  G+  EA+R A     K DV+++A
Sbjct: 397 IGT-------DVSDLIKDLSS--IDFVIAGSISEAVRLASLDAEKNDVVLLA 439


>gi|229013097|ref|ZP_04170262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
 gi|229168653|ref|ZP_04296375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228614809|gb|EEK71912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228748351|gb|EEL98211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
          Length = 450

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 125/405 (30%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V       S+ A+   G        +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYSISAAPFVG--------IT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++               LAK    + ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVAC----------EVAQLAKENEVVVTEL 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            +   +   S                +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 169 SSFQLMGVESFQ----------PKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +        ++K               E     
Sbjct: 219 YSII-NADDADVMALSAYSKGQKVLFSTTKEIEDGAYIKDNALY-------FKGEKVVKV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L+    V  R E+V T +        
Sbjct: 271 SDIVLPGKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           IV+   G DR      ++             IVT   
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLI-----PYFKHVKAIVTFGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +RA    G+          +A+  A       DV+++
Sbjct: 381 TA---PKLVRAAEKAGLDVIESVETLDDAVVKAYAHSTDGDVILL 422


>gi|154483291|ref|ZP_02025739.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
 gi|149735801|gb|EDM51687.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
          Length = 460

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 125/401 (31%), Gaps = 40/401 (9%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
                +  A    N P+L    TR +FL       +       + V+GT GK++  S + 
Sbjct: 80  KADNPELVAATEMNIPLL----TRAEFLGQIMKNYH-----TAIGVSGTHGKTTTTSMLS 130

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           QI   +      +     + +   + R+           +   + +        A + G+
Sbjct: 131 QIMLEANTDPTIL-VGGIMPAINGNTRIGHSD------NMITEACEYTNSFLSFAPTIGI 183

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                           N+  DH+D+ +      ++  R  E +    +  I    D    
Sbjct: 184 IL--------------NVAADHLDFFKDLDDIRHSFRRYAELIPEGGALVINSDIDNLDY 229

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                  N                              +         +  + GE  +YN
Sbjct: 230 FTEGLKCNVITVGSDPEKSMYSAANITYDEFARGSYDLVVNGETKTHIVLKVTGEHNIYN 289

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           +L +      +GID   ++  L++      RF++ G       +  DYAH  + +   +K
Sbjct: 290 SLASIAAAHFMGIDDNSIIAGLQQYGGTDRRFQYKG-KLGDITVIDDYAHHPDEIRATIK 348

Query: 375 NIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI-RAE 431
             +     ++ VVF      R +   P   K   + AD  ++ D     E D   I   +
Sbjct: 349 TAKHYPHKKMWVVFQPHTYTRTKALLPEFCKALSE-ADAVVLADIYAAREKDTLGISSKD 407

Query: 432 IIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++ GI           +  E     +E  +  D+L+  G G
Sbjct: 408 VMKGIKKLGTEAYYFPSFSEIENFLLENCSTGDLLITMGAG 448


>gi|299131924|ref|ZP_07025119.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
 gi|298592061|gb|EFI52261.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
          Length = 468

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 140/420 (33%), Gaps = 53/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT 
Sbjct: 66  GADVLVVSTAIKRDNPELMAARAQRIPVV---RRAEMLAELMRL------KSCIAIAGTH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +    G     +     I+++  + RL     + +    S         
Sbjct: 117 GKTTTTSMVATLLDA-GALDPTVINGGIINAYGTNARLGAGDWMVVEADESD-------- 167

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            + +     TN+  +H+D+ +T +A   A  R F E +P    A
Sbjct: 168 ------------GTFLKLPVDVAIVTNVDPEHLDHFKTFEAVQEA-FRHFVEGVPFYGFA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D A  + ++ +  +          Q     L  +       +  + +  +      
Sbjct: 215 VMCIDHAVVQALVGKIEDRRIITYGENPQADA-RLVDLQPFTGGSKFKVEIRHRKAGAAH 273

Query: 305 -------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+PG     NA  A  +   +G+    + + L     V  RF   G    G  
Sbjct: 274 VISDLVLPMPGRHNALNATAAIAVAYEVGMSDEAIRKALAGFGGVKRRFTRTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           +  DY H    +  +LK  R  T GR+I V      R    + +  +       AD  +V
Sbjct: 333 VIDDYGHHPVEIAAVLKAARDSTKGRVIAVV--QPHRYTRLQSLFEEFCTCFNDADTVVV 390

Query: 416 TDDNPRSEDPE-KIRAE---IIHGIPGFIEKGNRIEAIRTA---IEMLNKQDVLVVAGKG 468
            D  P  E P   I  +   +     G  E      A + A     +    D +V  G G
Sbjct: 391 ADVYPAGEAPIPGIDRDSFVLGLRAHGHREVIPLEGASQLASIVRRIAQPGDFVVCLGAG 450


>gi|148381488|ref|YP_001256029.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930938|ref|YP_001385863.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934724|ref|YP_001389270.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. Hall]
 gi|166222973|sp|A7FPH5|MURC_CLOB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222974|sp|A5I7S3|MURC_CLOBH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148290972|emb|CAL85108.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152926982|gb|ABS32482.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930638|gb|ABS36137.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           Hall]
          Length = 458

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 128/412 (31%), Gaps = 46/412 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV ++A +  +   T       + + +   FL            +  +A++GT GK+
Sbjct: 70  ADLIVYTAAIASDNPEITKAKEKN-IKLMDRADFLGNLMKGY-----KYNIAISGTHGKT 123

Query: 128 SVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +  +  + +   +  +G    I +       +        +  S           
Sbjct: 124 TTTSMLSHVALKANVDPTILVGGNLDIINGNVRVGESDFFITEACEYKSSFLKF------ 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                               G   N+  DH+DY++      NA  +  + +         
Sbjct: 178 ----------------FPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAY 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             D      + + + N     ++ G            A  N     +    K F     +
Sbjct: 222 GEDKNIQSIIKEASCNVITYGINSGDIQAHNIEYDEKACGNFD--VVKDNQKLFSVKLNV 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + N+L +  + +A  +    ++E +E       RFE  G  +    +  DYAH  
Sbjct: 280 PGKHNILNSLASICIGLASNMKDKDIIEGIESFFGTHRRFELKGCKN-NITVIDDYAHHP 338

Query: 367 NSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-D 424
             +   L   +     ++  VF      R         K   D AD  I+ D     E D
Sbjct: 339 TEISATLDAAKKYPHNKLFCVFQPHTYSRTLTLFDDFTK-CFDNADEIILADIYAAREKD 397

Query: 425 PEKIRAEIIHG--------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I ++++             F +  +        IE     D+++  G G
Sbjct: 398 TGIISSDMLGDKLRDRGLKCTNFHKFDDIK---NYLIENTKDGDLILTVGAG 446


>gi|225572707|ref|ZP_03781462.1| hypothetical protein RUMHYD_00896 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039943|gb|EEG50189.1| hypothetical protein RUMHYD_00896 [Blautia hydrogenotrophica DSM
           10507]
          Length = 433

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             VD AH  ++   + ++I    S + I  + G   D+D      + +I    A   I T
Sbjct: 303 FVVDGAHNPDAARRLEESICQYFSHKNIYYIVGMFRDKDYD---EVLRITAPYA-KGIFT 358

Query: 417 DDNP---RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              P   R+    ++  +            +  EA++ A E+   QDV+V  G
Sbjct: 359 VQTPNSQRALSARELAEDAGKYHDRVEAVSDLTEAVKRAYEVAGPQDVIVAFG 411


>gi|224826076|ref|ZP_03699179.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
 gi|224601713|gb|EEG07893.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
          Length = 455

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 135/422 (31%), Gaps = 56/422 (13%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           VA+     D   F       GAE +VVS   ++   +          VV +         
Sbjct: 53  VALKTGAFDATTFA------GAEMLVVSPGVAVATPAIAAFRRAGGEVVGDV-----ELF 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +R        ++A+TG++GKS+V S V  +C+++GL +   G                  
Sbjct: 102 ARAIAGSGSKVIAITGSNGKSTVTSLVGHLCRQAGLDTVLAGNIGL-------------- 147

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT---Q 223
           P+  A      S +      +E SS  L+      +   A +  N+  DH+D +      
Sbjct: 148 PVLDALGEREASGKRPDVWVLELSSFQLET--TTSLNADAATVLNISEDHLDRYADLLDY 205

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                A        +     A++ A           +             G++       
Sbjct: 206 AHSKTAVFNGRGVQVLNRDDALVRAMVRPGHAQRWFSLKETADYALRQDAGRYWLTVAGE 265

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           A+ +  ++++       + L  L     +     A    +             +    + 
Sbjct: 266 AVFDCAEMSLQGLHNAANALAALALTEAIGLPRAALLEGL-------------KTFTGLA 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFV        I         + E  L  +      R +V+   G  + Q   P+  
Sbjct: 313 HRVEFVAEVHGVRYIDDSKGTNVGATEAALNGMT-----RPVVLIAGGDGKGQDFSPLKP 367

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
             A  +A   ++        D  KIRA ++ G+P   ++     EA R A  +    DV+
Sbjct: 368 ACA-RIARAVLLI-----GRDAGKIRA-VLEGLPLPIVDCATLEEATREAARLAEAGDVV 420

Query: 463 VV 464
           ++
Sbjct: 421 LL 422


>gi|323699056|ref|ZP_08110968.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. ND132]
 gi|323458988|gb|EGB14853.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           ND132]
          Length = 483

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 130/420 (30%), Gaps = 55/420 (13%)

Query: 55  DGHLFIPQA---IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLY 110
            G   +  A   I         +      +  A      PI+     R   L+       
Sbjct: 74  HGADNVGDADVLIKS------TAIPDRNPELVAARERGIPII----PRAEMLAELMRLKT 123

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      +AV GT GK++  S +  I   +GL    I     ++++  + RL     +  
Sbjct: 124 G------IAVAGTHGKTTTTSLLATIFTEAGLDPTVI-IGGRLNTYGANARLGEGDYLIA 176

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               S  S                       +  I    TN+ +DH+D++  Q A   + 
Sbjct: 177 EADESDGSFLR--------------------LAPIITVVTNIDKDHMDFYDNQDAIDLSF 216

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           MR            +   DD   + ++                     +         + 
Sbjct: 217 MRFMNSTPFYGMNVV-CGDDEGVQRLLPLIKRPYLTYGLGKQNKLRGEIVSSHLRSLFKV 275

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                E  +     P      V NAL   G+ + +G+D   +++ L     V  RFE  G
Sbjct: 276 WLDGEEWGEVTVAQPGT--HNVLNALACIGVALEVGLDKEEIIQGLGNFGGVGRRFERKG 333

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL- 409
              +G  +  DY H    +   L+  +     R +VV        + K  + G+      
Sbjct: 334 -EKKGVIVVDDYGHHPAEIMANLRTAKECYPDRRLVVAFQPHRFSRTK-ALFGEFCKAFG 391

Query: 410 -ADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIE-----KGNRIEAIRTAIEMLNKQDV 461
            ADI ++T+  P SE P    +   +  GI    E       +     +   ++L   D+
Sbjct: 392 DADILLLTEIYPASESPIPGVSGLSLAQGIKQVSETKVQFFPDFESLEKRLKDLLQPGDL 451


>gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
 gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
          Length = 449

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 133/389 (34%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMVEKALEKGIPVL----TEVELAYLIS------DAPIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQGGLLSGNIGFPASQV------------------AQTATEKDVLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   HIDYH + + Y  AK  L + +  K+   + +  D   + 
Sbjct: 174 -MGIEAFHPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEKDVIVLNFNQDLAKEL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A      +    E         +PG   V NA
Sbjct: 233 ATKTKARVLPFSTIEKVDG---------AYLEDGLLKFKGEAVMRADELGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+++ ++ E L     V  R ++V             +     +    K 
Sbjct: 284 LATIAVAKVRGVENEVIKETLSAFGGVKHRLQYVDEIQGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  IA  L ++ I+ +  PR       RA    G
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPHIAG-LKEMVILGESAPR-----VKRAADKAG 393

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A + A ++ +  DV+++
Sbjct: 394 VS-YVDATDVADAAKKAFDLASPGDVVLL 421


>gi|239907962|ref|YP_002954703.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
 gi|259509768|sp|C4XK68|MURC_DESMR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239797828|dbj|BAH76817.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
          Length = 457

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 135/414 (32%), Gaps = 50/414 (12%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           A+ +V S+A      +         P++     R   L+       G      +AV GT 
Sbjct: 65  ADVVVKSTAVTSDNPEVVVARERGIPVI----PRAEMLAELMRLRTG------IAVAGTH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I   +G     I     ++++    RL     +      S         
Sbjct: 115 GKTTTTSLLATIFTEAGYDPTVI-IGGRLNAYGAGARLGQGEYLIAEADESD-------- 165

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  IA   TN+  DH+D++   +A  +A    F   +P     
Sbjct: 166 ------------GSFLCLSPIASVVTNVDADHLDHYDGIEAIDDA-FVDFLNNIPFYGVN 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD     ++ R +                 +    A+   +         +     
Sbjct: 213 VVCLDDPGVARILPRVNRPILTYGFSDKARLRGRIIDSGAMSCFEVSLDGKRLGE--MRL 270

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG   V NAL A G+ + +GI    + E L K   V  RFE  G    G  +  DY H
Sbjct: 271 NHPGRHNVLNALGAIGVSLEVGIPLGTIAEALAKFAGVGRRFERKG-EKDGVVVVDDYGH 329

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               ++  L   R +   R +VV        + K  + G        AD  ++T+  P S
Sbjct: 330 HPAEIKATLATARAVYPERRLVVAFQPHRFSRTK-ALFGDFCTCFEAADELLLTEIYPAS 388

Query: 423 EDP------EKIRAEIIHGIP-GFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           E P      E +   I            +   A+  A+  +L   D+ V  G G
Sbjct: 389 EAPIPGVSGESLGQGIRQVTKTKVAYYPDFA-AMEAALPGILRPGDLFVTLGAG 441


>gi|229111382|ref|ZP_04240935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
 gi|228672158|gb|EEL27449.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
          Length = 450

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAIEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVIEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|6723459|emb|CAB66325.1| MurC protein [Corynebacterium glutamicum]
          Length = 486

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 147/425 (34%), Gaps = 60/425 (14%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R+     P++   +    L               + + GT GK
Sbjct: 80  VVVTSFAAIPQDNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G+          ++    +    T          S  S        
Sbjct: 131 TSTTSMSVVAMQAAGMD-PSFAIGGQLNKAGTNAHHGTGEVFIAEADESDASLLRYK--- 186

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+D+ +T +AYF      F   +      ++
Sbjct: 187 -----------------PNVAVVTNVEPDHLDFFKTPEAYFQV-FDDFAGRITPNGKLVV 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---------QQVTISVEG 297
             +D ++ E+ +R+   G + +  G +       +V A+             + TI+++G
Sbjct: 229 CLNDPHAAELGERSVRKGIKTVGYGTRDAVQAHPEVPAMATVVDSQVVAEGTRATINIDG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +  +PG+  V N   A      +G D   ++E L     V  RFEF G    G  
Sbjct: 289 QEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKF 348

Query: 358 I----YVDYAHTSNSLEMILKNI----RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALD 408
                Y DYAH    +  +L+      +    GR+IV F      R    +    + AL 
Sbjct: 349 NGAAIYDDYAHHPTEVTAVLRRCATRVKAAGKGRVIVAFQPHLYSRTMEFQKEFAE-ALS 407

Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD A+V +     E P      +I  + +  IP  + + N         E+    D+++
Sbjct: 408 LADAAVVLEIYGAREQPVDGVSSEIITDAMT-IP-VVYEPNFSAVPERIAEIAGPNDIVL 465

Query: 464 VAGKG 468
             G G
Sbjct: 466 TMGAG 470


>gi|332557534|ref|ZP_08411856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275246|gb|EGJ20561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 477

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 149/457 (32%), Gaps = 44/457 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +FVA+  ++ DGH F+ +A+A+GA A +VS           +  + 
Sbjct: 25  TGVSIDTRSLGPGDLFVALA-DQRDGHAFVAEALARGAAAALVSR------RPGGLPEDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++ VTG+ GK+S    ++      G         
Sbjct: 78  PLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKTSTKEMLRATLGGQGTVHAAEASY 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  + +    V        +H  +   L  +     +  
Sbjct: 138 NNHWGV----------PLTLARMPADVDFAVVEIGM----NHPGEIAPLSRLARPHLALI 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                         A    +     E L     AI+ A    S  +  RA   G   ++ 
Sbjct: 184 TTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARAAALGVPAVTF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L  +           S  G  F F    PG     NAL       A+G+D 
Sbjct: 244 GQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATLAAAEALGLDL 303

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNS-----------LEMILK 374
            +    L       GR                  +D A  +N                  
Sbjct: 304 TIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASLELLAAMAPTD 363

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKIRAEI 432
            I  I +GR I + G   +    +  +   +A    LA+IA+V    PR     +   E 
Sbjct: 364 GIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR----MRALHEA 419

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           +             E +  A  +++  D+++V G KG
Sbjct: 420 LPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|297538642|ref|YP_003674411.1| cyanophycin synthetase [Methylotenera sp. 301]
 gi|297257989|gb|ADI29834.1| cyanophycin synthetase [Methylotenera sp. 301]
          Length = 856

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 133/384 (34%), Gaps = 30/384 (7%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA+   G+ P  ++ V GT+GK++    +  I    GL     G T++   + +  R+ T
Sbjct: 462 FAAGDDGRIP--LVTVAGTNGKTTTVRLISHILTCQGLRV---GMTNSDGVYIEGRRIDT 516

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL------------ 212
                   A + L    V    +E +  G+ +  L   +      TN+            
Sbjct: 517 GDCSGPKSARNVLMHPDVDAAVLETARGGVLREGLAFDRCNVAVVTNIGMGDHLGLSYIT 576

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             + +   +       A   +          A + A    +     +            +
Sbjct: 577 TVEDLAVVKRVVVQNVAPDGMAVLNAADPMTANMAAACPGAVTFFAQNGQLPVIATHRAH 636

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + ++++    +  +Q     ++             FQV NA+ A     A+ ++  ++
Sbjct: 637 GHRVVYVEGGQIVAAQQNNEHRIDLAKIPVTRNGTIGFQVENAMAAIASAWALKVEWDVI 696

Query: 333 LEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
           L+ +          PGRF F     RG  +  DY H  +++  ++  I  I + + +VV 
Sbjct: 697 LQGVSTFVNDAQTAPGRFNF--FEYRGASVIADYGHNPDAIVALVSAIENIPAKKRMVVI 754

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI------PGFIE 441
              GDR         +I  D  D  I+ +D   R     ++ A +  G+          E
Sbjct: 755 SGAGDRRDIDISRQSEILGDAFDEVILYEDQCQRGRADGEVLALLRSGLANAKRTKKVDE 814

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVA 465
                 AI  A+  L K D+ ++ 
Sbjct: 815 IRGEFVAIDAALSRLEKGDLCLIL 838


>gi|149377264|ref|ZP_01895011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
 gi|149358452|gb|EDM46927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
          Length = 446

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 125/351 (35%), Gaps = 39/351 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I+A+TG++GK++V + V ++ + +G      G   T               + L   
Sbjct: 108 DAPIIAITGSNGKTTVTTLVGEMARAAGRRVEVGGNIGTP-------------ALDLLGR 154

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L         +E SS  L+  R   +  +A +  N+  DH+D +  +     A  + 
Sbjct: 155 GADL-------YVLELSSFQLETTR--ELNALAATVLNVSDDHMDRYPDK----MAYFQA 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + +      A++  DDA S  + +       R L  G+                  +T 
Sbjct: 202 KQRIFNGCQNAVVNLDDALSTPMARD----NLRFLCFGFYRVNPDTFSTRDDDEGTWITF 257

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +         L G+  + N + A  L  A G+   ++L+ +++   +P R EFV   S
Sbjct: 258 GFDNLLLAEELGLMGQHNISNVMAALALGHAAGLPMDVMLDTVKRFKGLPHRCEFVRRVS 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I         +    ++++  + +G  IV+   G  +      ++ +         
Sbjct: 318 DVDYINDSKGTNVGATTAAIESL--VPTGGKIVLIAGGEGKGADF-SLLAEPVAAHCRAV 374

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++        D   I   + + +       +   A+ TA ++    D +++
Sbjct: 375 VLI-----GADAGTIATALGNRVETV-NAADIAGAVHTAKKLAQPGDRVLL 419


>gi|255284091|ref|ZP_05348646.1| tetrahydrofolate synthase [Bryantella formatexigens DSM 14469]
 gi|255265348|gb|EET58553.1| tetrahydrofolate synthase [Bryantella formatexigens DSM 14469]
          Length = 437

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIA 406
                       VD AH   + E + ++I+T  +GR I+ V G   D++      + +I 
Sbjct: 297 RFTVICDEPLFIVDGAHNRGAAEQLRESIKTYLAGRRIIAVCGVLKDKEYE---AVLQIT 353

Query: 407 LDLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLV 463
               D  I   T DNPR+   E++       IP      +  +A+  +      + DV++
Sbjct: 354 APYIDRMITIETPDNPRALPAEELARTAQKYIPHVEAAESLAQAVDRSFSAADREGDVIL 413

Query: 464 VAG 466
             G
Sbjct: 414 AFG 416


>gi|83648524|ref|YP_436959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
 gi|118595658|sp|Q2S9Z0|MURD_HAHCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83636567|gb|ABC32534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
          Length = 446

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 135/356 (37%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    ILA+TG++GKS+V + V ++ +  G++    G   T               +
Sbjct: 102 FSREANAPILAITGSNGKSTVTTLVGEMAKACGVNVAVGGNLGT------PVLDLLADEV 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                VE SS  L+    D +  +A +  NL  DH+D +    AY  
Sbjct: 156 EL--------------YVVELSSFQLET--TDRLGALAATVLNLSEDHMDRYADMMAYHL 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK+R+F     +    ++  DDA ++  + R        L     G++  L++       
Sbjct: 200 AKLRVFYGCRRQ----VLNRDDALAQPPLSREAEITWFTLKTPEPGQYGVLEEKDGAWLA 255

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                 +  +               NAL A  L  A G++    L+ L +   +  R E+
Sbjct: 256 YGAEKLLPVEQMRIRGKH----NWSNALAALALADAAGLEREPCLQALREFTGLTHRCEW 311

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V        I    A    + +  L  +  +TSG I+++ G  G + Q   P+   +   
Sbjct: 312 VADKDGVAYINDSKATNVGATQAALAGLGPVTSGGIVLICGGQG-KGQDFTPLAPAVKEW 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ + I+ +D P+         E + G    +      EA++ A E  +  D++++
Sbjct: 371 VSTLIIIGEDGPK-------LKEALAGGVMALSAETMEEAVKLAAEKSSPGDLVLL 419


>gi|85707193|ref|ZP_01038279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
 gi|85668247|gb|EAQ23122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
          Length = 465

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/414 (13%), Positives = 116/414 (28%), Gaps = 49/414 (11%)

Query: 63  AIAQGAEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           A+ + A  IV   +   Y   +          + V ++   F    A+  +G       +
Sbjct: 63  ALDRVASLIVSPGIPHLYPAPNRVIVAAQAAGVPVDNDIGLFFRSLATDDWGGFDVTPKV 122

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GKS+ ++ +  +   +G ++   G                   + L+   + L
Sbjct: 123 IAVTGSNGKSTTSALIHHVLVEAGRTAQLAGNIGRGVLDIDPPEDGGVVVLELSSYQTDL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +      V+V  +       R  G+     +   L  +                      
Sbjct: 183 ARALTPDVAVFTNFSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAVIGVDEPE-------- 234

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +  A   A+      V++ + +            +   L +         + +    
Sbjct: 235 --GQYLAGQMAEGPNDDRVIRISVDHKLTGSGWSVFARKGFLSEYRHGRQVGSIDLRGVK 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG     NA  A   C  +G+   ++   L     +P R + V        
Sbjct: 293 G-------LPGSHNHQNACAAYAACRTLGLAPRVIEAGLHSYAGLPHRSQRVAEKDGIIF 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           +    A   +S    L+    I            +     G     K  ++G+ A   A 
Sbjct: 346 VNDSKATNVDSALKALQAFENIRWICGGLEKDGGLAGLAPGLAHVRKAYVIGREAAGFAR 405

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                                  G           +A+ +A+      DV+++A
Sbjct: 406 AL---------------------GTVESEVCTTMAKAVASAMSDAESGDVVLLA 438


>gi|296160540|ref|ZP_06843356.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889289|gb|EFG69091.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
          Length = 467

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 132/427 (30%), Gaps = 63/427 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +       +  I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    + S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F   LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD   KE++        R        +   +             +  +    D + 
Sbjct: 214 VLCVDDPNVKEILPFVSKPIIRYGFAPD-AQVRAVNVQARDGKMHFTAMREDAAPLDIVL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--------G 356
            LPGE  V NAL A  +   + +  A +   L   + V  RF+  G              
Sbjct: 273 NLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVSSEGKTNGAY 332

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAI 414
            +  DY H    +   +   R    GR  +V      R    R         L+  D  +
Sbjct: 333 TLVDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVKVLSTVDALV 391

Query: 415 VTDDNPRSEDP------EKIRAEIIHG-------IPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +T+     E P        +   +          +    E  + + AI      +   DV
Sbjct: 392 LTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAI------VRDGDV 445

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 446 VITMGAG 452


>gi|312114843|ref|YP_004012439.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219972|gb|ADP71340.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 477

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 137/422 (32%), Gaps = 54/422 (12%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  + +SSA      +  A      P+     T   L               + VTG+ 
Sbjct: 66  GASVVCISSAVKEGNPELQAARERGLPVFSRAETLAALMK---------GYRTICVTGSH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  + +++GL    +     + S+  + R+                   V  
Sbjct: 117 GKTTTTSMIGWVMEKAGLDPTVL-VGGVLRSWGTNARIG------------ASRWMVVEA 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              +A+   L            G  TN+  +H+DY+ + +A   A  R F   +P+   A
Sbjct: 164 DESDATFIKL--------PTEIGVATNIDPEHLDYYGSVEALHEA-FRTFLRQIPQTGVA 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI----------S 294
           +   D    +E+ +    +G       +        K+  + ++    +           
Sbjct: 215 VAGIDHPVVRELTQELAASGELPPLTSFGRALDARVKIDNVVSQGASVMFDVVIAGKPGE 274

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +       +PG     NA  A   C+  G+ +  + + L     V  RF   G    
Sbjct: 275 PPLRHTGVKLQVPGAHNALNAAAAIAACLHAGLSADQIFDGLASFEGVDRRFSPRG-EWN 333

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-- 412
           G  IY DYAH    +  +L   R    GR+I V      R    + + G+     AD   
Sbjct: 334 GVAIYDDYAHHPAEIAAVLSAARGAARGRVIAVV--QPHRYSRLQSLFGEFCACFADADT 391

Query: 413 AIVTDDNPRSEDPEKIRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +VT      E P  I  + +       G             + T   +    D+++  G
Sbjct: 392 VVVTPVYSAGEQPNGIDRDTLVDGLRQQGHARIYPVDGEDTLVSTLAAVAQPGDLVLTLG 451

Query: 467 KG 468
            G
Sbjct: 452 AG 453


>gi|229192082|ref|ZP_04319051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
 gi|228591408|gb|EEK49258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
          Length = 450

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 122/403 (30%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T+                +A+         
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTV-------------ACEVAQGAKENEVVV 165

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               S +     L Q ++         F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 166 TELSSFQLMGVELFQPKIAA-------FLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|157151093|ref|YP_001449974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|189082919|sp|A8AW14|MURD_STRGC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157075887|gb|ABV10570.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 450

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 132/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 83  PYNNAMVIRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      S+ G   + +E SS  L 
Sbjct: 133 VLTAGGQNGLLSGNIGFPASQV------------------AQSACGKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++K 
Sbjct: 174 -MGIEAFHPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKG 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 232 MASQTQATVVPFSTTEKVDGAYLDGDV--------LTFRGEAIIKVAEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 284 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+    PR       RA    G
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAPR-----VKRAADQAG 393

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A  +    D++++
Sbjct: 394 VS-YLDATDVRDAAHKAFALAEPGDIVLL 421


>gi|186680972|ref|YP_001864168.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc punctiforme PCC
           73102]
 gi|229620055|sp|B2J717|MURC_NOSP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|186463424|gb|ACC79225.1| UDP-N-acetylmuramate--alanine ligase [Nostoc punctiforme PCC 73102]
          Length = 481

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 129/416 (31%), Gaps = 51/416 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A +    P+L   +    L   A           +AV GT GK++
Sbjct: 91  VICSTAINTNNLEYKAALELGCPVLHRSDVLAAL--IADYY-------SIAVAGTHGKTT 141

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    +     ++++  + RL                         +
Sbjct: 142 TSSMIGYMLLEAGLDPTIL-VGGEVNAWEGNARLG---------------QSQYLVAEAD 185

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++ T +   +        +    +      
Sbjct: 186 ESDGSLVKH-----APEIGIITNIELDHPDHYDTLEEVID--------IFQTFAKGCKTL 232

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLP 307
             +     ++                    +  +    +     +   GK        L 
Sbjct: 233 IGSIDCATVRDRLQPTISYSLHSDTDADYTVTNIDYRADGTTALVWERGKALGVLKLRLL 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + NAL A  +  A+G++   + + +        RFE  G    G     DYAH  +
Sbjct: 293 SRHNLSNALAAVAVGRALGLEFGAIAKGIATFEGARRRFELRG-EVDGITFIDDYAHHPS 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSED- 424
            + + L   R        VV      R       + + A     AD+ ++TD     E  
Sbjct: 352 EIRVTLAAARLQARPGQRVVAIFQPHRYSRTLTFLEEFAESFTHADLVVLTDIYSAGEPN 411

Query: 425 -----PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                 E++ AEI       + +          ++ L   D+ +  G G+    ++
Sbjct: 412 LGQITGEQLAAEIAKQHSQVVYQPTLPSVCEYLLQTLRPGDLALFLGAGNLN-QVI 466


>gi|330823366|ref|YP_004386669.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
 gi|329308738|gb|AEB83153.1| cyanophycin synthetase [Alicycliphilus denitrificans K601]
          Length = 863

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 76/236 (32%), Gaps = 13/236 (5%)

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A +               +            + +++ +   +  +     SV  ++ 
Sbjct: 605 PHVAAMATSCPGKVIFFAADRHHPVMATHRAQGNRVVYVDEGHIVAAEGSWRESVPLREI 664

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGG 356
                    FQV NA+ A      +G+    +   L          PGRF     + RG 
Sbjct: 665 PITRGGAIGFQVENAMAAIAATWGLGLPWQTIRRGLAGFVNDSDNAPGRFNV--MDYRGA 722

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DY H  +++  +++ +  I + +  VV    GDR         +      D  ++ 
Sbjct: 723 TLIADYGHNPDAIRALVQAVDAIPAKQRSVVISGAGDRRDQDIIEQTRTLGAAFDDVVLY 782

Query: 417 DDNP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D   R     ++ A +  G+ G        E      AI  A+E L   D+ +V 
Sbjct: 783 QDACQRGRADGEVLALLKQGLEGAPRTRYVTEIHGEFVAIDHALERLQPGDLCLVL 838


>gi|158334963|ref|YP_001516135.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
 gi|189028946|sp|B0CCD6|MURC_ACAM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158305204|gb|ABW26821.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
          Length = 487

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 132/432 (30%), Gaps = 58/432 (13%)

Query: 66  QGAEA---IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           QG+ A   ++ S+A      ++ A +++  PI    +    L         + P   +A+
Sbjct: 71  QGSSAPPQVICSTAIHEDNPEYQAAVQAGCPIFHRSDVLAAL-------MQEFP-QSIAI 122

Query: 121 TGTSGKSSVASFVQQI--CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            GT GK++ +S V  +        +    G  +     A+     T    YL        
Sbjct: 123 AGTHGKTTTSSLVGYLLLQASLDPTIIVGGEVAAWGGNAR-----TGESPYLVAEADESD 177

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                               L       G  TN+  DH D++ +        +       
Sbjct: 178 ------------------GSLVKFFPHIGVITNIELDHPDHYTSLDQV--VSIFQEFVDH 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                  +       + +      +               ++ +        V +   G+
Sbjct: 218 CHTLIVSVDCPTIADRFLALATDQSMITYSLSSKVSADYTVQNIDYSGQGTIVEVLERGE 277

Query: 299 DFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  PL GE  + NAL A  +   +G++   + + L        RFE  G  ++G  
Sbjct: 278 SLGQLELPLLGEHNLSNALAAVAVGRYVGLEFPAIAKALRTFSGAKRRFEIYG-EAQGIC 336

Query: 358 IYVDYAHTSNSLE--------MILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALD 408
           +  DYAH  + ++               T +  R++ VF      R         + +  
Sbjct: 337 LIDDYAHHPSEIQVTLASAKLQAQAAAATYSQSRVVAVFQPHRYSRAATFFQEFSQ-SFQ 395

Query: 409 LADIAIVTDD------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            AD+ +VTD       NP + + +K+   I         +      I      L   DV+
Sbjct: 396 DADLVVVTDIYSAGEANPGTINGKKLADAIAANHSVVTFQPTLTNVIDFLQGHLQSGDVV 455

Query: 463 VVAGKGHETVHI 474
           +  G G     I
Sbjct: 456 LFLGAGDLNRII 467


>gi|332363491|gb|EGJ41273.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK355]
          Length = 459

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 132/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNDMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEAFHPQIAVITNLMPTHLDYHGSLEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +A        +            V        +T   E         +PG   + NA
Sbjct: 241 MASQAQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQAAEIGVPGSHNIENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+    PR       RA    G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDIKG-LKKMVILGQSAPR-----VKRAADQAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A +     D++++
Sbjct: 403 VS-YLDATDVRDAAHKAFDQAKPGDIVLL 430


>gi|319941790|ref|ZP_08016112.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
 gi|319804723|gb|EFW01590.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
          Length = 465

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 137/425 (32%), Gaps = 57/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           +GA+A++VSSA    +   T      I VV   R   L+       G      +A+ G  
Sbjct: 63  RGADAVIVSSAVKADNPEVTAARELDIPVVP--RAVMLAELMRLRRG------IAIAGAH 114

Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S    +    G   +F IG    ++S   + RL T   +      S  S     
Sbjct: 115 GKTTTTSLTASLLAAGGLDPTFVIG--GKLNSAGANARLGTGEFLVAEADESDASFLN-- 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +  +  + TN+  DH+D +        +    F   LP    
Sbjct: 171 ------------------LTPVIAAVTNIDEDHMDTYGHDFEKLKSAFVDFLGRLPFYGV 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDF 302
           A++  DD   + +  R       +         +    V A   + + T+   +      
Sbjct: 213 AVLCMDDDNVRSI--RPRVTKPVIGYGLSHDATVRAIDVTADGTRMRFTVLRPDHPPLPV 270

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG------- 355
           +  LPG   V NAL A  +    G+    +   L +   V  RF   G            
Sbjct: 271 VLNLPGVHNVRNALAAVAIATLAGVKDEDIKRGLAEFKGVGRRFAQWGDIPIQDADGRIT 330

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               +  DY H  + +   L  +R    GR IVV        + +       K+  D  D
Sbjct: 331 GTFTLIDDYGHHPHEMAATLAAVRGAWPGRRIVVAFQPHRYTRTRDCFNDFVKVLED-VD 389

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--------AIRTAIEMLNKQDVLV 463
             ++ +  P  E P  I     H +   I+   R E               ++   DV+V
Sbjct: 390 GVVLANVYPAGEAP--IPGADSHHLAEAIKASGRSEPVVVDVDQVPDAVRSLVEPGDVVV 447

Query: 464 VAGKG 468
             G G
Sbjct: 448 TMGAG 452


>gi|312898962|ref|ZP_07758350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
 gi|310620124|gb|EFQ03696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
          Length = 454

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 27/396 (6%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++ S  +  +          P  V+    + L   ++R      E  +AV  T  +    
Sbjct: 57  VICSFGHQDESLLDEADIIVPSPVISPETRLLKAASARQIPVWSEVEVAVHVTDAEFIGI 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +        + L+   +  T   +    +             + + + +        E S
Sbjct: 117 TGTNGKTTTTVLTGEIMKATGRQTVVGGNIGFGLSETAEDLPSSAVVVA--------ELS 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  +    NL  DH+D H T +AY  AK R+F     K   AI+  DD
Sbjct: 169 SFQLEL--TSSLKAKSAVILNLTPDHLDRHHTMEAYGEAKKRIFLN-QDKNDYAILNYDD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +  + +          +   G                 +     +  +       L G+ 
Sbjct: 226 SAVRAMASDLSGTVLYISVHGEVPVGAFAADGNLYIRMEGKDTCLCKET---DLHLFGKH 282

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + N L AA L    G    ++   L +   V  R E+V                +++ E
Sbjct: 283 NIQNCLAAALLTYCAGASIDVIRRVLTEFRGVEHRLEWVRDVKGVPYYNDSKGTNTDASE 342

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIR 429
             L+          +++   G D+       M K+A    D  I+  +   R E      
Sbjct: 343 KALEAFSGH-----LILIAGGHDKMTDLTSFM-KLAARKVDTLILVGEAADRFE-----A 391

Query: 430 AEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV 464
                G+      G +  +A+RTA E   K   +++
Sbjct: 392 EARKAGMKDIRRVGFSMEKAVRTAYETAEKGQTVLL 427


>gi|261367771|ref|ZP_05980654.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
 gi|282570568|gb|EFB76103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
          Length = 465

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 105/354 (29%), Gaps = 29/354 (8%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + ++ + +G   F  G               TP  +
Sbjct: 111 FFEFCPCEIIAVTGSDGKTTTTTLISKMMEAAGRKVFLGGNIGAA--LLPQLADVTPEAV 168

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             VE SS  L   R           TN+  +H+D+H+  Q Y +
Sbjct: 169 ----------------AVVELSSFQLISMRRS---PKVAVVTNVTPNHLDHHKDMQEYID 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +    +P     + Y ++        ++   G +V                     
Sbjct: 210 AKRNILLWQVPPCRAVLGYENEISRSM---QSDCKGEQVWFTRLHETDNGAFLRAEDDTL 266

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                                      L+AA   +   +    + +       V  R E 
Sbjct: 267 CYAENGTVTPVVARSEVKLRGLHNVENLLAAIAAVWGRVPVEAMRQVASTFTGVEHRIEP 326

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T           A +       L++         I++   G D+     P+  +I   
Sbjct: 327 VRTLDGVTYYNDSIASSPTRTIAGLRSFDQ-----KIILIAGGYDKKIPYEPLAPEILAH 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +  + ++    PR E   +   +  +     +   N  +A+  A       DV+
Sbjct: 382 VKTLVLMGATAPRIEKAVREHPDFPNSDLKIVHADNMQDAVEKARAAAVPGDVV 435


>gi|154503754|ref|ZP_02040814.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
 gi|153795854|gb|EDN78274.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
          Length = 487

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 133/413 (32%), Gaps = 45/413 (10%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGT 123
           G + +V ++A   ++      +    P+L    TR + L    +       +  +AV+GT
Sbjct: 98  GIDCVVYTAAIRRENAELMEAVAKKIPML----TRAELLGQLMANY-----KTPIAVSGT 148

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  +   +G +   I     + +   + R+       +    +   +    
Sbjct: 149 HGKTTTTSMISHVL-LAGDTDPTISVGGILQAIGGNIRVG---SSGIFVTEACEYTNSFL 204

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H   + S                    N+  DH+D+ +  +   ++    F  LLP +  
Sbjct: 205 HFFPKIS-----------------IILNIEADHLDFFKDLEDIRHS-FHQFAALLPSDGT 246

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            II  +    +E+ +    +                                   D   +
Sbjct: 247 LIINGEIDQYQEICEGLDCSVVTYGMSPEFDYSAQNITYDEKGRVAFDFFRNGKLDTHIV 306

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G+  V NAL A      +G+    + + L        RFE+ GT      I  DYA
Sbjct: 307 LSVTGDHNVSNALSAIATAELLGLSMDTIQKGLLSFSGTDRRFEYKGTID-DVTIVDDYA 365

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    ++  LK  +     ++  VF      R +       + AL  AD  I+ D     
Sbjct: 366 HHPTEIKATLKAAKHYPHRKLWCVFQPHTYTRTKAFFQEFAE-ALSHADHVILADIYAAR 424

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKG 468
           E        E +   I           +  E I T   E  N  D+++  G G
Sbjct: 425 ETDTLGVSSEALSDAIRSLGTDSHYFPSFAE-IETFLKENWNAGDLVLTMGAG 476


>gi|160878268|ref|YP_001557236.1| UDP-N-acetylmuramate--alanine ligase [Clostridium phytofermentans
           ISDg]
 gi|189029008|sp|A9KQI8|MURC_CLOPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160426934|gb|ABX40497.1| UDP-N-acetylmuramate--alanine ligase [Clostridium phytofermentans
           ISDg]
          Length = 469

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 124/409 (30%), Gaps = 47/409 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                ++ A  + N P+L   +   FL     +      +N + V+GT GK++  S V  
Sbjct: 80  KSDNVEYQAVQKHNIPML---DRADFLGQVMLQY-----KNAIGVSGTHGKTTTTSMVSL 131

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G     I     + +   + R+       +       S                 
Sbjct: 132 MM-LEGNFDPTISVGGILDNIEGNIRIGHSENFIVESCEYKNSFLSFN------------ 178

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD----- 250
                          N+  +H+D+ +  +    +     ++L    +  +    D     
Sbjct: 179 --------PAHAIILNIEAEHLDFFKDIEDIRTSFHTFAKKLPDYGNLVVWGGIDRYEEL 230

Query: 251 --AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--L 306
               S  V+     +                  V +     +     +   F       +
Sbjct: 231 IEDLSCNVITYGMFSSEEEREQNKDRYDYAACNVTSDDFGLRSYDLYKHGKFVDRINLAV 290

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  V N+L A  L   +G   + + + L        RFE  G  + G  I  DYAH  
Sbjct: 291 IGDHNVLNSLAAISLVDTLGGTMSAIKKALLAYKGTERRFERKGVLN-GITIVDDYAHHP 349

Query: 367 NSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD------DN 419
           + ++  L    +     I  VF      R +         AL LAD  ++ D      +N
Sbjct: 350 SEIKATLIAAASYPHKDIWCVFQPHTYTRTKSFFHDFT-TALALADKIVLADIYAAREEN 408

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P     + I+ E++          +  E  +  +E     D+L+  G G
Sbjct: 409 PGDISSKDIQNELLKIGKEAYYISDFAEIEKFLLEHCTNGDLLITMGAG 457


>gi|295696465|ref|YP_003589703.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
 gi|295412067|gb|ADG06559.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
          Length = 454

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 127/416 (30%), Gaps = 47/416 (11%)

Query: 60  IPQAIAQGAEAIVV---SSAYSLQDFSATIRSNTPI---LVVDNTRK---FLSLFASRLY 110
             +    GA  +V     S +             P     V +  R+    ++       
Sbjct: 48  ANELARMGARLVVGGHPESLFDQPWDEVVKNPGVPYSAHPVAEAIRRGIPVVTELEVAWR 107

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            + PEN L +TGT+GK++  S+V  + + +G+     G                   I  
Sbjct: 108 IR-PENWLGITGTNGKTTTTSWVGHMLEVAGVPHRVAGNIGVPLCDVV-------EAID- 158

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                         +  E SS  L        +   G+  N+   H+DYH   +AY  AK
Sbjct: 159 ----------SEEWLVAELSSFQLQ--GTLRFRPHIGAILNIYPAHLDYHGGLEAYAAAK 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +F    P++   +        + +              G +   +    V        
Sbjct: 207 KNMFVNQGPEDYAVLNGGRKDEHQLMA---GVRARPARFGGPRRPGVPGMAVEGDRVLWW 263

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                E         LPGE  + N L A  L +  G   + V         V  R EFV 
Sbjct: 264 DGFRAEPVCAVGDVALPGEHNLENFLAAGTLAVLAGASLSAVATSGRTFRGVEHRMEFVR 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                       A    +    L         + ++    G DR    R ++  +  +  
Sbjct: 324 QWQGVTFYNDSKATNPEAAFRALGAFP-----KNVIWIAGGLDRGDDYRRLLP-LLQEGR 377

Query: 411 DIAIVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++T     PR      +  E+  GIP      +  EA+R A+ +    DV+++
Sbjct: 378 VKTVLTMGQSGPR---IAALAQEV--GIP-VRRVADVEEAVRIAVSLARGGDVVLL 427


>gi|110833460|ref|YP_692319.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
 gi|123345752|sp|Q0VS01|MURC_ALCBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110646571|emb|CAL16047.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
          Length = 474

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 80/433 (18%), Positives = 139/433 (32%), Gaps = 49/433 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           G + D GH    + I  GA+ +V S+A + ++          I VV    + L+      
Sbjct: 61  GVRVDIGHR--AENID-GADVVVTSTAVNTENLEVAAAHERRIPVVPRA-QMLAELMRFR 116

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +G      +AV GT GK++  S    I   +G   +F IG    ++S   + RL      
Sbjct: 117 HG------IAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIG--GRLNSAGTNARLG----- 163

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                              +AS   L          ++   TN+  DH+  +    A   
Sbjct: 164 -------QSRYLVAEADESDASFLHLQ--------PMSAIVTNVDADHMHTYGGDFAQLE 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                F   LP    A++  DD   ++++ R +    R             + V      
Sbjct: 209 NTFIEFLHNLPFYGVAVMCVDDPVVRKLLPRVNRQVIRYGFSEDADL--RAENVRQDGMV 266

Query: 289 QQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               +     +  D    +PG   V NAL A  +    G     ++  L     V  RF+
Sbjct: 267 THFRVVRAEGEPLDVSLNMPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNFTGVGRRFD 326

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIM 402
             G     G    +  DY H    +   +  IR    GR + +        R Q      
Sbjct: 327 VQGDYHFDGGSATLVDDYGHHPREVAATIDAIREGWPGRRLAMLFQPHRYTRTQDLYEDF 386

Query: 403 GKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            ++     D+ ++ +     E+P        +   +       +   +  +        L
Sbjct: 387 VEVLS-GVDVLLMLEVYAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLASQL 445

Query: 457 NKQDVLVVAGKGH 469
              D+LV  G G+
Sbjct: 446 QNGDLLVTQGAGN 458


>gi|269219669|ref|ZP_06163523.1| tetrahydrofolate synthase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210911|gb|EEZ77251.1| tetrahydrofolate synthase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 571

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 18/147 (12%)

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            V+EH       PGR E V ++     + VD AH  +  +     +R    GR++ V G 
Sbjct: 412 DVVEHAFMSVSSPGRLEIVRSSPT---VVVDAAHNPHGAQATADALREYFPGRLVGVVGM 468

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI---PGFIEKGNRI 446
             D+D         +   + D  +VTD    R+ D ++  A+I  G+        + N  
Sbjct: 469 MADKDVEG---FLGVLEPVLDAVVVTDIASDRAMDADE-LADIAGGVFGDGRVFVERNLA 524

Query: 447 EAIRTAIEMLNKQD-------VLVVAG 466
           EAI  A  +    D        +VV G
Sbjct: 525 EAIDRAAGLAESDDGAPMASPAVVVLG 551


>gi|89055250|ref|YP_510701.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
 gi|109892708|sp|Q28NN6|MURC_JANSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|88864799|gb|ABD55676.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
          Length = 474

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 93/309 (30%), Gaps = 16/309 (5%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +    S         + VEA       +RL          TN+  +H+++  T +     
Sbjct: 149 IHAYGSNARVGQGDWMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGTIENLRQG 205

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            +     +                  V K                         A     
Sbjct: 206 FLDFVSNIPFYGLAVCCTDHPEVQTLVGKITDRRVVTFGFNAQADVRAVNLHYRAGVACF 265

Query: 290 QVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            + + S +        P+PG+  V NAL A  +   +G+ +  + E L+    V  RF  
Sbjct: 266 DIALQSEDILIEGCTLPMPGDHNVSNALAAVAVARHLGMKADEIREALDGFKGVNRRFTK 325

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG    G  +  DY H    +  +LK  R  + GR+I V      R      +       
Sbjct: 326 VG-EVGGITVIDDYGHHPVEIAAVLKAARQASDGRVIAV--HQPHRYSRLHSLFDDFCGC 382

Query: 409 L--ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
              AD+  + +     EDP +       +   I HG        +  +  R   E     
Sbjct: 383 FSEADVVAIAEVYAAGEDPIEGASRDDLVAGMIRHGHRHARAILDEDDLERLVREQARPG 442

Query: 460 DVLVVAGKG 468
           D++V  G G
Sbjct: 443 DMVVCLGAG 451


>gi|317402452|gb|EFV83021.1| UDP-N-acetylmuramate-L-alanine ligase [Achromobacter xylosoxidans
           C54]
          Length = 468

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 137/424 (32%), Gaps = 54/424 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA+AIV S+A +  +          I VV   R   L+           +  +AV GT G
Sbjct: 64  GADAIVTSTAVAGDNPEVIAARAARIPVVP--RAIMLAELMRL------KRGIAVAGTHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  I    G           ++S   + RL     I +    S  S       
Sbjct: 116 KTTTTSLVASILAA-GDLDPTFVIGGRLNSAGANARLGQGDYIVVEADESDASFLN---- 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH+D +    A   +    F + LP    A+
Sbjct: 171 ----------------LLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----F 300
           +  DDA  +E+M     +         +   +   +V A   + +  +    +D      
Sbjct: 215 LCTDDANVREIM--PFVSRPITSYGLNEDAMVRGYEVQADGTRMRFNVQRSHRDTLLPPL 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----- 355
                LPG   V NAL A  +   +G+    + + L     V  RF   G          
Sbjct: 273 QVELNLPGLHNVRNALAAIAVATELGVSDEAIRDALASFKGVGRRFTQTGEFPVPAVHGG 332

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               +  DY H    +   L   R     R IV+        + +       ++    AD
Sbjct: 333 GTFTVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGT-AD 391

Query: 412 IAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++T+     E P        +   +   G    +   +  +  +  ++ +   DV++V
Sbjct: 392 AVLLTEVYAAGEPPLVAADGRALSRALRVAGKVEPVFVEDVADLPQAVVDFVRDGDVVIV 451

Query: 465 AGKG 468
            G G
Sbjct: 452 MGAG 455


>gi|329905042|ref|ZP_08273977.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547778|gb|EGF32551.1| Cyanophycin synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 831

 Score = 64.1 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 126/371 (33%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++    +  +  ++GL     G T+T   + +  R+ +        A + L
Sbjct: 448 VAVTGTNGKTTTVRLIAHLMTQTGLRV---GMTNTDGVYIRGRRIDSGDCSGPRSARNVL 504

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
               V     E +  G+ +  L   +      TN+G        + T         R+  
Sbjct: 505 LHPDVDAAVFETARGGVLREGLAFDRCQVAVVTNIGTGDHLGLNYITTVEDLAVLKRVIV 564

Query: 236 ELLPKESPAIIYADDAYSKEVMKRA----------HNAGCRVLSVGYQGKFIHLKKVCAI 285
           + +     A++ A D     +                            + + +     +
Sbjct: 565 QNVSDTGVAVLNATDPIVARMAGNCSGSVTFFGSDRRHPVMATHRAQGRRVVFIDDDMLV 624

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             + +    +   +          FQV N + +     A+ +D  ++   L+        
Sbjct: 625 AAEGKTEYRIALSEIPITRGGAIGFQVENVMASVAAGWALDLDWDVMRSGLKSFANDSDN 684

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF     + RG  +  DY H  +++  +++ +  + + R  VV    GDR       
Sbjct: 685 APGRFNV--FDYRGATLIADYGHNPDAILALVQAVECLPAKRRSVVISGAGDRRDEDIRQ 742

Query: 402 MGKIALDLADIAIVTDDNP-RSE---DPEKIRAEIIHGIPGFIEKGN-RIE--AIRTAIE 454
             +I     D  ++  D   R     +   +    + G          R E  AI TA+E
Sbjct: 743 QTEILGAAFDDVLLYQDQCQRGRADGEVVALLRAGLAGASRTTVIDEIRGEFLAIDTALE 802

Query: 455 MLNKQDVLVVA 465
            L+  D+ ++ 
Sbjct: 803 RLSPGDLCLIL 813


>gi|89098947|ref|ZP_01171827.1| folyl-polyglutamate synthetase [Bacillus sp. NRRL B-14911]
 gi|89086351|gb|EAR65472.1| folyl-polyglutamate synthetase [Bacillus sp. NRRL B-14911]
          Length = 447

 Score = 64.1 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 58/167 (34%), Gaps = 16/167 (9%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                  +  A           +     L         PGR E +   S    + +D AH
Sbjct: 272 HQTRNAALAAAAAGILNQYYSFMIEEKDLRKGLSEAYWPGRLERL---SDNPVVLMDGAH 328

Query: 365 TSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRS 422
               +  +   +     G+ I VVF    D+   K   M +I    AD    T  D PR+
Sbjct: 329 NEEGIMALADELGKRYDGKKIAVVFAALSDKKLDK---MIRILDGAADRITFTQFDFPRA 385

Query: 423 EDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D     AE++ G+          +  EAIRT +  L   DVLV+ G
Sbjct: 386 AD-----AEMLAGLSISRNKTACASWEEAIRTELSNLQSADVLVITG 427


>gi|207721502|ref|YP_002251942.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
 gi|206586662|emb|CAQ17248.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
          Length = 483

 Score = 64.1 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 131/430 (30%), Gaps = 68/430 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F   LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-----TNSRGG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALDLA 410
            +  DY H    +   +   R     R +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATVAAARGAFPDRRLVLAFQPHRFTRTRDCFEDFIKVLGTV----- 388

Query: 411 DIAIVTDDNPRSEDPEKIRAE----------IIHGIPGFIE--KGNRIEAIRTAIEMLNK 458
           D  ++ +     E P  I A           +   I         +  +AI  A      
Sbjct: 389 DGLLLAEVYSAGEPP--IVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDA---AQD 443

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 444 NDVVITMGAG 453


>gi|88856513|ref|ZP_01131170.1| UDP-N-acetylmuramate-alanine ligase [marine actinobacterium
           PHSC20C1]
 gi|88814167|gb|EAR24032.1| UDP-N-acetylmuramate-alanine ligase [marine actinobacterium
           PHSC20C1]
          Length = 482

 Score = 64.1 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 135/415 (32%), Gaps = 44/415 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   G+ A +V +     D    + +    + V +  + L+            
Sbjct: 65  GHD----AAHLGSAAALVYTGALWPDNPEYLAAVERGIPVLHRSQALAWLVG------DT 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV G  GK++    +    +  G +S        I      +   T     +    S
Sbjct: 115 RLVAVAGAHGKTTSTGMIITGLRELG-ASPSFVNGGVIQGLGTSSGSGTDDLFVVEADES 173

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S    +                          TN+  DH+D++ +  A+ +A +    
Sbjct: 174 DGSFLLYS--------------------TAIALITNVDADHLDHYGSHDAFDDAFVEFAS 213

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                   A++ + D      + +  N    V     +   + L  V +       ++ V
Sbjct: 214 RASD----AVVVSSDDPGAIRVTQRLNHANIVTFGEAEDATVRLHSVTSEGPV-AFSVVV 268

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G++      +PG     NA  A  +   +G D    ++ +        RFE       G
Sbjct: 269 DGREERVQLSVPGHHNAVNATGAIAVLTGLGHDLGAAIDAVSTFAGTQRRFEL-HAVVDG 327

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIA 413
             +Y DYAH    +E  L   R++   G++I V       R +       ++   LAD  
Sbjct: 328 VSVYDDYAHHPTEVEAALSGARSVVGAGKLIAVHQPHLYSRTRDMATEFAEVYERLADHT 387

Query: 414 IVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           IV D     EDP      ++ +             +  +A     E+  + D+++
Sbjct: 388 IVLDVFGAREDPIPGVTGELVSSQFADPTRVDFVPDWQQAANRVAELAGEGDIVM 442


>gi|303242546|ref|ZP_07329024.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302589908|gb|EFL59678.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 464

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 109/362 (30%), Gaps = 45/362 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I AVTG+ GK++  + +  +    G + +  G   T      D    T   +
Sbjct: 111 FFEVCPAQIFAVTGSDGKTTTTTLIYNMLTAQGYNCWLGGNIGTPLLSKIDEIKETDKVV 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L       +       TNL  +H+D H++   Y  
Sbjct: 171 ------------------LELSSFQLH---TMTLSPNVAVVTNLAPNHLDMHKSMDEYIE 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F      +   + + +D   +       N                  ++    + 
Sbjct: 210 AKKNIFLHQSKSDKVILNFDNDITREFSKDVKGNVVYFSRVNKIDSGAKMDGEMLVYSDG 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +   V   D       PG   + N L A    I   ++   +         V  R E 
Sbjct: 270 KDIREIVNSGDIVI----PGVHNIENYLAAIAAVI-DYVEIDTIKRVATTFKGVEHRIEL 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A + +     L + +        V+   GG   +    +MG++ ++
Sbjct: 325 VRELDGIKFYNDSIASSPSRTIAGLNSFKQ------KVILIAGGYDKKIPYDVMGEVLVN 378

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP--------GFIEKGNRIEAIRTAIEMLNKQD 460
                ++       +   KI   ++  +           I+     EA++ A E     D
Sbjct: 379 KVKCLVLV-----GQTAPKIEKALLDEVQRTGNGKDINVIKCSTLKEAVQKAYEFAKSGD 433

Query: 461 VL 462
           ++
Sbjct: 434 II 435


>gi|254464869|ref|ZP_05078280.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
 gi|206685777|gb|EDZ46259.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
          Length = 465

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 78/458 (17%), Positives = 143/458 (31%), Gaps = 57/458 (12%)

Query: 23  MQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSLQ 80
           +Q  + K ++++  SR  + G  IFV            + +A    A  ++ S+      
Sbjct: 38  VQGSDLKSSKIT--SRLQELGARIFVGQKAEN------LEEA----AVVVISSAIKPGNP 85

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           +         P++   +    L            ++ +A+ GT GK++  + + ++    
Sbjct: 86  ELDEARLRGLPVVRRADMLAELMRL---------KSNVAIAGTHGKTTTTTMMAELMVAG 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G     +     I ++  + R+                      + VEA       +RL 
Sbjct: 137 GFDPTIV-NGGIIHAYGSNARMGQGE-----------------WMVVEADESDGSFNRLP 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  +H+++        +  +     +                  V + +
Sbjct: 179 ATI---AVVTNIDPEHMEHWGDFDRLRDGFLEFVSNIPFYGIAVCCTDHAEVQALVGRIS 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAA 319
                                  A      V +  E +  +    P+PG+  V NAL A 
Sbjct: 236 DRRVVTYGFNAQADVRAVNLTYKAGVAHFDVVLQAEDRVIEGCTLPMPGDHNVSNALSAV 295

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +   +G++S  + E L     V  RF  VG    G  I  DY H    +  +LK  R  
Sbjct: 296 AVARHLGMNSTEIREALAAFGGVNRRFTKVG-EVNGVTIIDDYGHHPVEIAAVLKAARQA 354

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK-------IRA 430
             GR+I V      R      +          AD+  + +     EDP +       +  
Sbjct: 355 CEGRVIAV--HQPHRYSRLSNLFEDFCACFNEADVVAIAEVFSAGEDPIEGASRDDLVAG 412

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I HG        N  +  R   E     D++V  G G
Sbjct: 413 LIRHGHRHARALLNEEDLERLVREQARPGDMVVCLGAG 450


>gi|83748767|ref|ZP_00945782.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|207744400|ref|YP_002260792.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724588|gb|EAP71751.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|206595805|emb|CAQ62732.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 483

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 131/430 (30%), Gaps = 68/430 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA A+VVS+A    +          I +V   R   L+       G      +A+ GT G
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIVP--RAVMLAELMRLKQG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +    G   +F IG    ++S   + RL T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAEGGLDPTFVIG--GRLNSAGANARLGTGDFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D +    A        F   LP    A
Sbjct: 171 -----------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           ++  DD   +E++        R         +                +           
Sbjct: 214 VLCVDDPNVREILPFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLS 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-----TNSRGG 356
               LPG   V NAL A  +   + +    +++ L + + V  RF+  G           
Sbjct: 274 ITLNLPGMHNVQNALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRF 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV------FGCGGDRDQGKRPIMGKIALDLA 410
            +  DY H    +   +   R     R +V+      F    D  +    ++G +     
Sbjct: 334 TLIDDYGHHPVEMAATVAAARGAFPDRRLVLAFQPHRFTRTRDCFEDFIKVLGTV----- 388

Query: 411 DIAIVTDDNPRSEDPEKIRAE----------IIHGIPGFIE--KGNRIEAIRTAIEMLNK 458
           D  ++ +     E P  I A           +   I         +  +AI  A      
Sbjct: 389 DGLLLAEVYSAGEPP--IVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDA---AQD 443

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 444 NDVVITMGAG 453


>gi|289704957|ref|ZP_06501372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
 gi|289558293|gb|EFD51569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
          Length = 527

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 138/418 (33%), Gaps = 51/418 (12%)

Query: 67  GAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA A  +V S  +              + +  +    L+       G+   + + +TGT+
Sbjct: 99  GAAADLVVTSPGWRPDQPLLMAAHAAGLPIWSDVE--LAWRLRERAGRKTADWVCLTGTN 156

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V+ I +  G  +   G   T                      +    +G   
Sbjct: 157 GKTTTVTMVEAILRADGRRAVACGNVGTP------------------VLDAIRDPEGFDV 198

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +++E SS  L      G+   + +  NL  DH+D+H + + Y  AK +++          
Sbjct: 199 LALELSSFQLHW--THGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVYANTRVACVF- 255

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                D  ++ +++RA        ++G+      L  +  +         ++ +  + + 
Sbjct: 256 --NEQDPVTRTLVERADVQEG-CRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEAIA 312

Query: 305 --------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P+     V NA  AA L  A+G+  A V E L        R + V T+    
Sbjct: 313 LAERADLGPVAPRHTVANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRDIM 372

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   ++ +  L    +      +V    G  +      ++   A  L  + ++ 
Sbjct: 373 WVNDSKATNPHAADASLAAFSS------VVWLAGGLPKGVTYHELVAAHAHRLRAVVLLG 426

Query: 417 DDNPRS---------EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D             E P         G           EA+R A  +    D +++A
Sbjct: 427 RDTSALRAALAAHAPEVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVLMA 484


>gi|317050622|ref|YP_004111738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
 gi|316945706|gb|ADU65182.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
          Length = 439

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 125/356 (35%), Gaps = 36/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            Y ++   I+AVTGT+GKS+V + +  I Q+SG+S+   G                P+  
Sbjct: 93  FYQEYEGAIIAVTGTNGKSTVTALIAHILQQSGISAVAAGNIGL------------PALD 140

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            LA         G     +E SS  L+   +   +       N+  DH++ + T + Y +
Sbjct: 141 TLAL--------GCQVTVLELSSFQLET--IQTFRPDIAVLLNVTEDHLNRYDTFEHYVD 190

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F     ++   + + DD   + +    H    RV       + +     C +   
Sbjct: 191 AKERIFLNQTAEDWCVLNH-DDPVIRTLTSDNHIPARRVFFSSRSRQMVDNFLNCTVQGV 249

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +        +       L G   + N   A       G+    +   LE    +P R   
Sbjct: 250 RGKVNGQLLEAPADRLCLEGLHNMENVAAALAAVRLYGLSPEQIGTGLEGFAPLPHRMTL 309

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V        I    A    ++      ++++   + I++   G ++      + G  A+ 
Sbjct: 310 VREIVGVRYIDDSKATNIGAV------LKSLEGQKNIILIAGGRNKGGDFAQLAG--AVK 361

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   I+       E   +I   +   +   +   +  +A+  A +     D +++
Sbjct: 362 ASCKLILAI----GEARHQIAGALGKSVS-VLLADDMADAVSQAWKQAVSGDTVLL 412


>gi|148658617|ref|YP_001278822.1| FolC bifunctional protein [Roseiflexus sp. RS-1]
 gi|148570727|gb|ABQ92872.1| FolC bifunctional protein [Roseiflexus sp. RS-1]
          Length = 453

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 121/414 (29%), Gaps = 51/414 (12%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           N  +  +L A+     H    + + GT GK S A+ ++ I + +GL +         +  
Sbjct: 28  NLVRTRALLAALGNPHHAMPSVIIAGTKGKGSTAALLEAIVRAAGLRTGLWTSPHLHTYR 87

Query: 157 AQDNRLTTP--------------------------SPIYLAKALSYLSSQGVTHVSVEAS 190
            +     TP                          +P+  A   +        H    A 
Sbjct: 88  ERIQVNRTPMTRDELVRAVESIQPVIESMMSGPVGAPVTFAIGFALALRYFAEHAVDLAI 147

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                  R D   ++    + +     D+                 ++    P I     
Sbjct: 148 LEVGVGGRFDSAAVVTPILSVITPISYDHMDLLGDTLAQIAWEKAGIMKPGVPVISAPQH 207

Query: 251 AYSKEVMKRA------HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             ++E + R            R        +  H      I   Q + I  + +    + 
Sbjct: 208 PEARETLIRCAAEIGAPLYFVRDTLAPSAIQDDHSTGAWPIPAGQGLDIEPQQRILFDIA 267

Query: 305 PLPGEFQVYNAL-----VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           P                 A  L  A    +   +         PGR E +        I 
Sbjct: 268 PSLPGVFQKVNARLATGAALLLRDAGLPIADDAIARGLADARWPGRMEIIDGAPP---IV 324

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-D 417
           +D AH   S+  +++++R    + R +VVFG   D+D  +   M        D  ++T  
Sbjct: 325 LDGAHNGESMRQLVQSLRCLFPNRRYVVVFGASRDKDLER---MLPELAPAVDALVLTAS 381

Query: 418 DNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +PR      E  ++    +  G+       +  EA+  A       D++ V G
Sbjct: 382 RHPRALVALDELRQRFIPLVREGVT-IDIVLDPAEALAHARAYATDDDLICVTG 434


>gi|219849960|ref|YP_002464393.1| FolC bifunctional protein [Chloroflexus aggregans DSM 9485]
 gi|219544219|gb|ACL25957.1| FolC bifunctional protein [Chloroflexus aggregans DSM 9485]
          Length = 438

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 10/155 (6%)

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           + AA L    GI                PGRFE +    R   I +D AH  +S   + +
Sbjct: 272 MGAALLLRGQGIAIDDAAIRRGLAEAWWPGRFEVIDGRPR---ILIDGAHNGDSAVKLWQ 328

Query: 375 NI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEI 432
            I + +   R I+V G   D+D              AD  I+T   +P++ D ++I AE+
Sbjct: 329 AIEQELPHRRFILVLGTSRDKDIAAIAA---ALAPHADHIIITRSSHPKAMDLDRIAAEV 385

Query: 433 IHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAG 466
                  +       EAI TA  +    D++ V G
Sbjct: 386 EPFASAPMTIVPVVAEAIATARTLAGPADLICVTG 420


>gi|163941652|ref|YP_001646536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           weihenstephanensis KBAB4]
 gi|226711883|sp|A9VU74|MURD_BACWK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|163863849|gb|ABY44908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 450

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 125/405 (30%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V       S+ A+   G        +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYSISAAPFVG--------IT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++               LAK    + ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVAC----------EVAQLAKENEVVVTEL 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            +   +   S                +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 169 SSFQLMGVESFQ----------PKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTETD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +        ++K               E     
Sbjct: 219 YSII-NADDADVMALSAYSKGQKVLFSTTKEIEDGAYIKDNALY-------FKGEKVVKV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L+    V  R E+V T +        
Sbjct: 271 SDIVLPGKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           IV+   G DR      ++             IVT   
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLI-----PYFKHVKAIVTFGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +RA    G+          +A+  A       DV+++
Sbjct: 381 TA---PKLVRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|228476841|ref|ZP_04061486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
 gi|228251415|gb|EEK10560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
          Length = 450

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 138/412 (33%), Gaps = 54/412 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASRLYGK 112
           + +G + +       L D +  +    P +  DN     +             A  +   
Sbjct: 53  LEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNPMVARALEKGIPVWTEVELAYLVSEA 112

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+ +TG++GK++  + +  +    G S    G     +S      +T    +    
Sbjct: 113 P---IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEVA-QSVTAQDTL---- 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         +E SS  L    +D         TNL   HIDYH + + Y  AK  
Sbjct: 165 -------------VMELSSFQL--MGIDSFHPHIAVITNLMPTHIDYHGSFEEYVAAKWN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +  ++   +   + +  D     + K         +      + +    +       +  
Sbjct: 210 IQNQMTADDFVVLNFNQD-----LAKELATQTKAQVVPFSTVEKVDGAYLENGGLYFKGE 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + ++  +      +PG   V NAL    +    GI +  + E L     V  R +FV T 
Sbjct: 265 LVMQADEI----GVPGSHNVENALATIAVAKLSGISNQAIKETLASFGGVKHRLQFVDTI 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                     +     +    K +    + ++I++   G DR      ++  I   L  +
Sbjct: 321 DEVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFDELIPDITG-LKKM 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+ +  PR       RA    G+  +++  +  +A R A +  +  DV+++
Sbjct: 376 VILGESAPR-----VKRAADKAGVT-YLDAKDVADATRIAFDQASAGDVVLL 421


>gi|83942742|ref|ZP_00955203.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. EE-36]
 gi|83846835|gb|EAP84711.1| UDP-N-acetylmuramate--alanine ligase [Sulfitobacter sp. EE-36]
          Length = 471

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 131/415 (31%), Gaps = 47/415 (11%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V+SSA      +  A   +  PI+        L            ++ +AV GT 
Sbjct: 70  GAAVVVISSAIKPGNPELDAARVAGLPIVRRAEMLAELMRL---------KSNIAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V ++    G+    +     I ++  + R+                      
Sbjct: 121 GKTTTTTMVAELLVNGGIDPTVV-NGGIIHAYGSNARMGQGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++              F   +P    A
Sbjct: 163 MVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGDFDTLRK-GFLDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDF 302
           +   D    + ++ +  +          Q     +             +         D 
Sbjct: 219 VCCIDHPEVQALVGKITDRRVMTYGFNTQADVRAVNLHYKAGVAHFDIMFQTEGITIKDC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NA+ A  +   +G+ +  +   L     V  RF  VG    G  I  DY
Sbjct: 279 SLPMPGDHNVSNAMAAVAVSRHLGMKTEEIRAALAGFGGVNRRFTKVG-EVDGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    +  +LK  R  T GR+I V      R         +       AD+  + +   
Sbjct: 338 GHHPVEITAVLKAARQATEGRVIAV--HQPHRYSRLHHHFEEFCACFNDADVVGIAEVYA 395

Query: 421 RSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P +       +   I HG        +  +  R   E     D++V  G G
Sbjct: 396 AGEAPIEGAGRDDLVAGLIRHGHRHARAVQSEDDLARLVREQAGPGDMVVCLGAG 450


>gi|115524116|ref|YP_781027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518063|gb|ABJ06047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 480

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 30  INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           +  +S DSR +  G  + AI G   DGH F+       A     + A   ++      ++
Sbjct: 28  VFGLSIDSRTLTPGDAYFAIKGEAHDGHAFVAA-----ALEAGAAVAVVAREQRDQFAAD 82

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             +L+VD+  + L   A     +    ++AVTG+ GK+S    ++ +    G +   +  
Sbjct: 83  ARLLIVDDVLEALRDLARAARARLEGQVIAVTGSVGKTSTKEALRAVFAAQGETHASVAS 142

Query: 150 TSTIS 154
            +   
Sbjct: 143 FNNHW 147


>gi|238019066|ref|ZP_04599492.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
 gi|237864321|gb|EEP65611.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
          Length = 460

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 88/277 (31%), Gaps = 15/277 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      TN+  DH+D+++T     NA    F E LP+   AI+  D+   + +M R +
Sbjct: 171 LRPHTIVITNIEDDHMDHYKTMDNLLNA-FCEFVETLPESGKAIVCGDNENIRYIMSRVN 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                   +     ++                            +PGE  V N+L A  +
Sbjct: 230 R-NFITYGLSDNNDYVAKNIHYVDSTLVYDVYHKGVNIERIRLRVPGEHNVLNSLAAFIV 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                     ++       +   R      +  G  +  DYAH    ++  LK  + +  
Sbjct: 289 AHDCCGVETRIITKGLGKFIGAKRRFETKGHVAGVWVVDDYAHHPTEIKATLKAAKELEK 348

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----------PEKIRAE 431
            R+I VF                 A   AD   +TD     ED          P  I+A 
Sbjct: 349 HRVICVFQPHRFTRTSLLKDEFATAFTNADEVYMTDIYSSGEDPIPGIDGHTIPNAIKAA 408

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +       +  E +   +      D+++  G G
Sbjct: 409 TGQDVNYVPSVDDLPEVLAKVV---RPNDLVITMGAG 442


>gi|237807301|ref|YP_002891741.1| UDP-N-acetylmuramate--L-alanine ligase [Tolumonas auensis DSM 9187]
 gi|259509784|sp|C4LA26|MURC_TOLAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237499562|gb|ACQ92155.1| UDP-N-acetylmuramate/alanine ligase [Tolumonas auensis DSM 9187]
          Length = 484

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 137/418 (32%), Gaps = 48/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA  +VVS+A    +          I VV   R+   L+      +G      +A+ GT 
Sbjct: 78  GASVVVVSTAIHGDNPEVMAARELRIPVV---RRAEMLAELMRYRHG------IAIAGTH 128

Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S +  +  ++G   +F IG    ++S   + RL T   +      S  S     
Sbjct: 129 GKTTTTSLIASVYAQAGADPTFVIG--GLLNSAGTNARLGTSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +        A    F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYGGDFTKLRATFLEFLHNLPFYGL 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++     A             +         ++ ++ +  +G      
Sbjct: 227 AVVCIDDPVIRELLPEIGRATITYGYSEDADVQVQEFVQEGSQSQFRLRL-QDGSFLPLR 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---V 360
             LPG     NA     + +   I +  +++ L +   V  RF+  G    G        
Sbjct: 286 LNLPGRHNALNAAATVAVALEDHIPTDAIVDALAQFAGVGRRFQQYGEFDTGAGKVLLVD 345

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD 418
           DY H    +   L   R     R +V+        R +       ++     D+ I+ D 
Sbjct: 346 DYGHHPTEVRATLAATRAAWPERRLVLVFQPHRYTRTRDLYDDFAEVLAK-VDVLIMLDV 404

Query: 419 NPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               EDP        +   I   G    I      E      ++L   DV++  G G+
Sbjct: 405 YAAGEDPIPGADGRSLCRSIRQRGTLDPIFVATPAEVPGVLADVLKDGDVVLTQGAGN 462


>gi|326795772|ref|YP_004313592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546536|gb|ADZ91756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
          Length = 449

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 116/358 (32%), Gaps = 40/358 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +A+TG++ KS+V + V+ + +  G ++   G                   +
Sbjct: 103 FAEYVDAPFIAITGSNAKSTVTTLVEYLLKSIGKAAIAGGNIGRP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                 +        +  +E SS  L+      +K       N+  DH+D +    +Y  
Sbjct: 150 DTLSQEAD-------YYVLELSSFQLET--THALKADVACMLNVSEDHMDRYDDLYSYQR 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R++         A+    D  +  ++ +               +F  L     +   
Sbjct: 201 AKQRIYRG----CKSAVCNKQDILTAPLLSQDTPVRAFTTGSPDLKEFGLLPDDKGVWLS 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA--LVLEHLEKLHVVPGRF 346
           + V       +        G   + N L A  +   +G+D     V + L +   +P R 
Sbjct: 257 KGVKPLYHSSEIALK----GTHNLANVLAALSILDLLGVDIELPAVAQGLYEFKGLPHRC 312

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V   +    I         +    L  +  +    II++ G  G +D    P+  +  
Sbjct: 313 ETVAVVNGVTYINDSKGTNVGATLAALNGLGDLKRQNIILIAGGEG-KDADFSPL-SQPI 370

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  I+       +D + I   I   +  +   G+  EA+  A     + D++++
Sbjct: 371 DKYVKRTIL-----FGKDADLISTSI-SDVSVYSLVGDLSEAVALAKSDAKEGDIVLL 422


>gi|316933187|ref|YP_004108169.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
 gi|315600901|gb|ADU43436.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           DX-1]
          Length = 468

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 138/421 (32%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           +GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDA-GDLDPTVINGGIINAYGTNARLGAGDWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A  +A  R F E +P    
Sbjct: 168 -------------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEG 297
           A++  D    + ++ +  +          Q     L               +        
Sbjct: 214 AVMCIDHPVVQTLVGKIEDRRIITYGENPQADARLLDLTPSGGGSTFKVAFRDRKAGTAH 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D + P+PG     NA  A  +   +G+    + + L     V  RF   G    G  
Sbjct: 274 EIADLMLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DY H    +  +LK  R  T+G++I V      R    + +  +       AD  IV
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQSTAGKVIAVV--QPHRFTRLQSLFEEFCTCFNDADAVIV 390

Query: 416 TDDNPRSEDPEK-IRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D  P  E P   I  +        HG    +   +          +    D +V  G G
Sbjct: 391 ADVYPAGEAPIAGIDRDHFVLGLRAHGHRDVVPLQDSASLAGVVAGLARSGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|157373552|ref|YP_001472152.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
 gi|189082501|sp|A8FQA1|MURC_SHESH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157315926|gb|ABV35024.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 489

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 73/419 (17%), Positives = 141/419 (33%), Gaps = 50/419 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVS+A S  +          I VV    + L+      +G      +AV GT GK
Sbjct: 80  GADVVVVSTAISADNPELLEAQALRIPVVQRA-EMLAELMRYRHG------VAVAGTHGK 132

Query: 127 SSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++  S +  +  Q     +F IG    ++  ++    +R                     
Sbjct: 133 TTTTSLIASVYGQAERDPTFVIGGLLNSAGTNARLGHSRYLIAEADE------------- 179

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                   S     H    ++ +    TN+  DH+D ++       +    F   LP   
Sbjct: 180 --------SDASFLH----LQPMVSVVTNIEADHMDTYEGDFEKLKSTFIDFLHNLPFYG 227

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD   +E++ +                   L  V   +  +        +D + 
Sbjct: 228 VAVMCIDDPVVRELLPKVGR-KIVTYGFSEDADVQALNFVQEAYLSRFTLRRAGVEDMEV 286

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIY 359
           +  LPG+  V NAL A  +     ID A +++ L     +  RFE +G          + 
Sbjct: 287 VVNLPGQHNVLNALAAIAVATEDEIDDAAIIQALADFQGIGRRFEQLGCFDTNKGEMVLV 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD 417
            DY H  + +   +K  +     + +V+        + +       ++     D  ++ D
Sbjct: 347 DDYGHHPSEVAATIKAAKAGWPEKRLVMVYQPHRYSRTRDLYDDFVEVLSQ-VDCLLLLD 405

Query: 418 DNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E P        +   I   G    I   +  + +    ++L   D+++  G G+
Sbjct: 406 VYAAGESPVPGADSRALCRSIRQRGQLDPIFVSDSEQLLSLLPDVLQAGDLVLTQGAGN 464


>gi|256379761|ref|YP_003103421.1| UDP-N-acetylmuramate--L-alanine ligase [Actinosynnema mirum DSM
           43827]
 gi|255924064|gb|ACU39575.1| UDP-N-acetylmuramate/alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 466

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 106/452 (23%), Positives = 164/452 (36%), Gaps = 60/452 (13%)

Query: 36  DSRHIQAGWIFVAIV--GNKE----DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           DSR +      +A+   G       DG   + Q +  G  A+VVS+A    +        
Sbjct: 39  DSRTV------LALRAQGAHVAVGHDGAN-LDQ-LDGGPTAVVVSTAIREDNPELVAARE 90

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             + V    R+  +  A+ +       +  V GT GK+S  S +    Q   +       
Sbjct: 91  RGVAV---LRRAEA-LAALMLDH---RVACVAGTHGKTSTTSMLTVALQHCRMDP----S 139

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +      +           +  A +  S       +   +                   
Sbjct: 140 FAIGGDLNESGANAHQGAGGVFVAEADESDGSFLFFAPSVA-----------------VV 182

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH+D+H T +AY  A    F E +      I  ADD  S  +  RA   G RV  
Sbjct: 183 TNVEADHLDHHGTVEAYV-AVFDEFLERIEPGGVLIACADDEGSAALADRAEKRGIRVRR 241

Query: 270 VGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            G            +           + ++G+  D    +PGE    NA+ A    + +G
Sbjct: 242 YGRAATGEGAAVLVEHRPDGAGGLAVVELDGERLDVRVAVPGEHMAGNAVAALLAAVELG 301

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRII 385
            D   VLE L     V  RFEF G  + G R+Y DYAH    +   LK  R +   GR++
Sbjct: 302 ADRWGVLEGLAAFGGVRRRFEFKGVAA-GVRVYDDYAHHPTEVAAQLKAARPVAGDGRLV 360

Query: 386 VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAE---IIHGI 436
           VVF      R +      GK AL LAD  +V D     EDPE     ++ A+   +  G 
Sbjct: 361 VVFQPHLYSRTKTFAAEFGK-ALALADEVVVLDVYGAREDPEPGVTGELVADAVPLEAGR 419

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +   +R+        ++ + D++V  G G
Sbjct: 420 VRHVPSFDRVP--ELVAGLVREGDLVVTMGAG 449


>gi|126735382|ref|ZP_01751128.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. CCS2]
 gi|126715937|gb|EBA12802.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. CCS2]
          Length = 465

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 135/413 (32%), Gaps = 43/413 (10%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE IV+SSA      +  A      P++        L            ++ +AV GT 
Sbjct: 70  GAEVIVISSAIKPGNPELDAARAKGMPVVRRAEMLAELMRL---------KSNVAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G+    I     I ++  + R+                      
Sbjct: 121 GKTTTTTMVAALLDEGGIDPTVI-NGGIIHAYGSNARMGQGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++  T++A        F   +P    A
Sbjct: 163 MVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGTEEALHQ-GFYDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQVTISVEGKDFDF 302
           +   DD   + ++ +  +          Q     +         +      + +      
Sbjct: 219 VCCTDDPDVQSLVGKITDRRVVTYGFNAQADIRAVNLHYKAGVAHFDIALQAEDAVIEGC 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  DY
Sbjct: 279 ALPMPGDHNVSNALSAVAVARHLGMKKDEIRAALAGFKGVNRRFTKVG-EIDGVAIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            H    +  +LK  R  T GR+I V                    + AD+  +++     
Sbjct: 338 GHHPVEIAAVLKAARQSTEGRVIAVHQPHRFSRLSHHFDEFCACFNDADVVGISEVFSAG 397

Query: 423 EDPEKIRAE-------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E+P    +        I HG        +  +  R   E     D++V  G G
Sbjct: 398 EEPIDGASHRDLVAGLIRHGHRHARTVESEDDLERLVREQAKSGDMVVCLGAG 450


>gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine ligase [Herbaspirillum seropedicae
           SmR1]
 gi|300072464|gb|ADJ61863.1| UDP-N-acetylmuramate-L-alanine ligase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 475

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 128/425 (30%), Gaps = 58/425 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           GA+AIV S+A    +          I +V   R   L            +  +A+ GT G
Sbjct: 64  GADAIVTSTAVKGDNPEVLAARKKHIPIVP--RAVMLGELMRL------KKGIAIAGTHG 115

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  +  + G   +F IG    ++S   + +L T   I      S  S      
Sbjct: 116 KTTTTSLVASVLAQGGLDPTFVIG--GRLTSAGANAKLGTGEFIVAEADESDASFLN--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH++ +    A        F + LP    A
Sbjct: 171 -----------------LTPVIEVITNIDADHMETYNHDFARLKQAFVEFTQRLPFYGVA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD + +E+M                     +         +   I           
Sbjct: 214 VLCLDDPHVREIMPMVSKPILTYGFHED-ADVRAIDAKAVDGKMEFTVIQDGYAPMQVSL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG--------- 355
             PG   V NA  A  +   + +D A   + L + + V  RF   G              
Sbjct: 273 NQPGMHNVQNACAAIAIARELDVDDAATQKALTEFNGVGRRFTRYGEVPLWDAEGKPAGH 332

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIA 413
             +  DY H        +   R    GR  +V      R    R +       L+  D+ 
Sbjct: 333 FTLVDDYGHHPVETAATIAAARGAYPGRR-LVLAFQPHRYTRTRDLFEDFVKVLSSPDVL 391

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++ +     E P        +   +            + G+  E IR  +      DV++
Sbjct: 392 VLAEVYSAGEAPIVAADGRSLAHALRAAGKVEPVFVDDIGDMPETIRNVV---RDGDVVM 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 TMGAG 453


>gi|124515887|gb|EAY57396.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum rubarum]
          Length = 464

 Score = 63.8 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 143/425 (33%), Gaps = 50/425 (11%)

Query: 56  GHLFIPQAIAQGAE-AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           GH    Q    GA  A+V+S+A S ++       R   P++      + L+       G 
Sbjct: 57  GHR-AEQV---GAVDAVVISTAISQENPELLEARRLGIPVVH---RGEALAGIMRGFQG- 108

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AV G+ GK++  S +  +    G           +  F  + R+          
Sbjct: 109 -----VAVAGSHGKTTTTSMIAHVL-AHGGLDPTCVVGGRVPGFGGNARVGK-------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                        ++  +           I       TN+ ++H+DY+Q+      A   
Sbjct: 155 ------------KNIFIAESDESDGSFLKISPHVAVVTNVDQEHLDYYQSFDQLK-AAFE 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   +P E  A+   DD     ++   +                       +     V 
Sbjct: 202 RFLTSVPPEGLAVACLDDPELSNILPSLNAPHWTYGFSPAADVVGSDVSAEGLSTSFSVR 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +     F+  +PG   V NAL    +    G+++    E LE+   V  RF  VG  
Sbjct: 262 LRGKD-IGTFVLNVPGVHNVLNALATIAVAHHFGLEAECAREALERFRGVGRRFTQVGEE 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLA 410
             G RI  DY H    + + L   R     R +VV      R    R ++ + A    LA
Sbjct: 321 G-GIRIVDDYGHHPTEIGVTLAAARQAYPDRRLVV-AFQPHRFSRTRDLLSRFASAFQLA 378

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+ ++ +     E P       ++  EI           G++ E I   + +L   D+L+
Sbjct: 379 DVLVLGEIYGAGESPIAGITGRRLFDEIRTSFENEAYFAGDQSEMISRLMTILKPGDLLI 438

Query: 464 VAGKG 468
             G G
Sbjct: 439 TMGAG 443


>gi|309801451|ref|ZP_07695578.1| Mur ligase family, catalytic domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221966|gb|EFO78251.1| Mur ligase family, catalytic domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 159

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 18/116 (15%)

Query: 4   QDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVG----NKEDGHLF 59
             L+ +        L+   +   +     ++ D+R ++ G + V   G       DG   
Sbjct: 15  HHLLDEVITPERWSLNADGIDNADVPFTHITYDTRTVREGTLLVC-KGRFRPEFLDGLK- 72

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
                 +G  A V    +S         +  P L+V++ RK LSL ++  YG    
Sbjct: 73  -----ERGLVAYVSERDFSDH-------TEVPGLIVNDARKALSLLSAAFYGMPQN 116


>gi|302380068|ref|ZP_07268545.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312141|gb|EFK94145.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 461

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 98/278 (35%), Gaps = 14/278 (5%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +           N+  DH+D+++    +  A    + + L + S AII  DD   + ++ 
Sbjct: 175 ILNYYPSMAIILNIDEDHLDFYKDL-NHIVATFIGYMKNLDENSKAIINIDDKNCEPLLS 233

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNAL 316
                         +  +         +      +S E   KD +F   + G   +Y+A+
Sbjct: 234 HIKGEIITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIGRHNIYDAV 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C    ID   + +++++ H +  R E +G   +G  +  DY H    ++  LK +
Sbjct: 294 AAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGF-YKGCEVKTDYGHHPTEIKNTLKAL 352

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPE------KI 428
                G+   VF       + K  ++   A      D  IVT+     E  +       +
Sbjct: 353 DEHKKGKFYCVF-QPHTYSRTKM-LLDDFANSFYDCDEVIVTEIYAAREKFDSSIHSTDL 410

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +++             EA       + + D+++  G
Sbjct: 411 VEKLVKNGVNAKYYKTFEEARDYIRSKVCENDMVLTTG 448


>gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
 gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
          Length = 441

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 133/397 (33%), Gaps = 46/397 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ S    + +      +   I VV +        A R++G     I+A+TGT+GK++ 
Sbjct: 60  IILKSPGIRMDNPVILKANELNIEVVSDL-----ELAQRIFGD--IKIVAITGTNGKTTT 112

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + ++   SG  +  IG                     +       +S   T+  +E 
Sbjct: 113 TSLMTKMLNDSGRKAISIGNIG------------------VGMLWEIYNSDKDTYFVIEC 154

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+       K       N+  DHID+H + + Y NAK  + +         +  AD
Sbjct: 155 SSFQLES--TKHFKPQYSCIINITPDHIDWHGSMKNYVNAKKNVLKNQDENCYTVL-NAD 211

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D Y +E  K        + +     +   +K      +       ++ KD      L G 
Sbjct: 212 DEYYEECKKFTKANIYDISTSKNIERGSFIKDNSIYFSDSYCDKIIDLKDV----KLIGY 267

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L    L   IGI+   + E L     V  R EFV   S             ++ 
Sbjct: 268 HNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVEHRLEFVRDLSGVKYYNDSKGTNVDAS 327

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +++       + +++   G D+          IA      A++     R      + 
Sbjct: 328 VKAIESFD-----KNVIILAGGYDKKVSLDNFF--IAGKDKFKALILMGQTR-----DLF 375

Query: 430 AEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +     G        +  +A+  A ++    DV+++
Sbjct: 376 EQKAKEYGFKNIYLVDDMKQAVTQANKIAESGDVVLL 412


>gi|307731071|ref|YP_003908295.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585606|gb|ADN59004.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
          Length = 467

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 134/430 (31%), Gaps = 53/430 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPEN 116
           I  A     GA A+VVS+A    +       +  I +V   R   L+       G     
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I      S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH+D +    A        F 
Sbjct: 165 DASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP    A++  DD   KE++        R        +   +             +  
Sbjct: 205 HRLPFYGIAVLCVDDPNVKEILPFVSKPIIRYGFAPD-AQVRAVNVEARDGKMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV------ 349
           +    D    LPGE  V NAL A  +   + +  A +   L   + V  RF+        
Sbjct: 264 DAAPLDITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVI 323

Query: 350 --GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
             G       +  DY H    +   +   R    GR  +V      R    R        
Sbjct: 324 ADGQTRGAYTLVDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVK 382

Query: 408 DLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNK 458
            L+  D  ++T+     E P        +   +           + ++ +  A+  ++  
Sbjct: 383 VLSTVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAIVRD 442

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 443 GDVVITMGAG 452


>gi|16330482|ref|NP_441210.1| cyanophycin synthetase [Synechocystis sp. PCC 6803]
 gi|8134384|sp|P73833|CPHA_SYNY3 RecName: Full=Cyanophycin synthetase; AltName: Full=Cyanophycin
           synthase
 gi|1652973|dbj|BAA17890.1| slr2002 [Synechocystis sp. PCC 6803]
          Length = 873

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       VDYAH       +   ++     R  VV G  GDR      
Sbjct: 727 QTPGRMNL--FNLGRYHALVDYAHNPAGYRAVGDFVKNWHGQRFGVV-GGPGDRRDSDLI 783

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAI 453
            +G+IA  + D  IV +D+        E  + I   I+   PG  +    +   A+  A+
Sbjct: 784 ELGQIAAQVFDRIIVKEDDDKRGRSGGETADLIVKGILQENPGAAYEVILDETVALNKAL 843

Query: 454 EMLNKQDVLVV 464
           + + ++ ++VV
Sbjct: 844 DQVEEKGLVVV 854


>gi|312866147|ref|ZP_07726368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
 gi|311098551|gb|EFQ56774.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
          Length = 451

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 136/416 (32%), Gaps = 55/416 (13%)

Query: 61  PQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS---------LFASR 108
            QA+  +G + I       L D    +    P +  DN   ++ L            A R
Sbjct: 49  AQALLEEGIKVICGHHPLELLDEDFAVMIKNPGIRYDNPMVKRALEKGIPVYTEVELAYR 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + +  +    G S+   G        A +  +T     
Sbjct: 109 ISESP---IIGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGFP---ASEVAMTATDQD 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                +E SS  L    ++         TNL   HIDYH T + Y  
Sbjct: 163 TL---------------VMELSSFQL--MGVETFHPHMAVITNLMPTHIDYHGTFEEYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  L +++   +   + +  D       K               G         A   +
Sbjct: 206 AKWHLQDQMTAGDYLILNFNQDLAKDLATKTQATVVPFSTQEEVDG---------AYLKE 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +    E         +PG   V NAL    +    GI + ++ E L     V  R + 
Sbjct: 257 GYLYFKGEQVMAADSIGVPGSHNVENALATIAVAKLSGIANEVIAETLASFGGVKHRLQS 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +G            +     +    K +    + ++I++   G DR      ++  I   
Sbjct: 317 LGQVQGVAFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFDELVPDIKG- 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L  + I+    PR +           G+P +++  +  EA   A E     DV+++
Sbjct: 372 LKKMVILGQSAPRLKRAAD-----KAGVP-YLDAKDVKEATWIAFEEAASGDVVLL 421


>gi|303230738|ref|ZP_07317485.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514498|gb|EFL56493.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 460

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 144/434 (33%), Gaps = 57/434 (13%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++     QG +A+V S+A      +  A       IL   +  K +   
Sbjct: 50  GATVHIGHNADYV-----QGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     N +AV G  GK+S  S + QI    G     +     +      + L   
Sbjct: 105 ---------TNGIAVAGAHGKTSTTSMIGQILVE-GQMEPTVIIGGEVDYLKGSSCLGKG 154

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               +    S  S                       ++      TN+  DH+D+++T + 
Sbjct: 155 EYSVVEADESDGSFLK--------------------LRPKMIVITNIEDDHMDHYKTMEN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP +  A++  D+   + VM +                    K +   
Sbjct: 195 LLNA-FCQFVETLPVDGKAVVCGDNDNIRYVMSKVERQFITYGL--EDSNDYVAKNIHYE 251

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVP 343
            +     +  +G+        +PG   V N+L +  +           +++ L K     
Sbjct: 252 DSSLVYDVVHKGETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPSIVKALGKFIGAK 311

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RFE  G    G  +  DYAH    ++  LK  + +   R+I VF               
Sbjct: 312 RRFETKGH-VAGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRYSRTSLLKDEF 370

Query: 404 KIALDLADIAIVTDDNPRSEDPEK---------IRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             A   AD   +TD     EDP           I +E+ H    ++E  N + A+    +
Sbjct: 371 ATAFTSADEIYMTDIYSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLA--K 428

Query: 455 MLNKQDVLVVAGKG 468
           ++   D+++  G G
Sbjct: 429 VVRPNDLVITMGAG 442


>gi|229134722|ref|ZP_04263531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
 gi|228648768|gb|EEL04794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
          Length = 450

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 126/405 (31%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V       S+ A+   G        +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYSISAAPFVG--------IT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++               LAK    + ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVAC----------EVAQLAKENEVVVTEL 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            +   +   S                +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 169 SSFQLMGVESFQ----------PKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +        ++K               E     
Sbjct: 219 YSII-NADDADVMALSAYSKGQKVLFSTTKEIEDGAYIKDNALY-------FKGEKVVKV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  ++  L+    V  R E+V T +        
Sbjct: 271 SDIVLPGKHNLENILAAMSIAKLLGVSNEAIIAVLKSFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           IV+   G DR      ++             IVT   
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLI-----PYFKHVKAIVTFGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +RA    G+          +A+  A       DV+++
Sbjct: 381 TA---PKLVRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|163814710|ref|ZP_02206099.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
 gi|158450345|gb|EDP27340.1| hypothetical protein COPEUT_00861 [Coprococcus eutactus ATCC 27759]
          Length = 460

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 93/277 (33%), Gaps = 9/277 (3%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K       N+  DH+D+ +           +F    PKE   I+  D  Y   V++ 
Sbjct: 175 HAFKPFISIILNVDADHLDFFKDIDEIA-ESFHVFATKTPKEGLVIVNGDMEYYDTVVRD 233

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                             H  +   + +     +    +  D    + GE  VYN+L A 
Sbjct: 234 LECRIVTFGKGTQNKYSAHNIRFDDLGHPTYTLVVDGKEVTDITLRVFGEHNVYNSLSAI 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              + +GI   ++ + L +      RFE+ GT     R+  DYAH    +   LK  +  
Sbjct: 294 AAALELGISIDVIKQGLSECVGAERRFEYKGTILDNVRVMDDYAHHPTEISATLKAAQNT 353

Query: 380 TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEI 432
           +   +  VF      R         + AL + D  IV D     E        +++  +I
Sbjct: 354 SYNELWCVFQPHTYSRTYALFDEFAE-ALKVCDHVIVADIYAAREKDTGLVSAKQLAEKI 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                      +  +     ++   K D+L+  G G+
Sbjct: 413 AESGTDAFYLPSFDDIENYLLKNCKKNDLLITMGAGN 449


>gi|310820716|ref|YP_003953074.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309393788|gb|ADO71247.1| Tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 437

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRP 400
            PGR E +G       + +D AH    ++++L ++  +  GR    VFG   D+D   R 
Sbjct: 294 WPGRLEELGCQPP---VLLDGAHNPAGMKVLLASLEALYPGRALHAVFGVVADKD---RG 347

Query: 401 IMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M +          +T  D PRS  PE+   E            +  +A+  A       
Sbjct: 348 PMMQGLFPRCASVHLTPLDTPRSLPPERYLPEAQALCAAVYAYASLDDALAGARSQARPG 407

Query: 460 DVLVVAG 466
           DV++  G
Sbjct: 408 DVILCTG 414


>gi|115375946|ref|ZP_01463194.1| folylpolyglutamate synthase [Stigmatella aurantiaca DW4/3-1]
 gi|115367029|gb|EAU66016.1| folylpolyglutamate synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 409

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRP 400
            PGR E +G       + +D AH    ++++L ++  +  GR    VFG   D+D   R 
Sbjct: 266 WPGRLEELGCQPP---VLLDGAHNPAGMKVLLASLEALYPGRALHAVFGVVADKD---RG 319

Query: 401 IMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M +          +T  D PRS  PE+   E            +  +A+  A       
Sbjct: 320 PMMQGLFPRCASVHLTPLDTPRSLPPERYLPEAQALCAAVYAYASLDDALAGARSQARPG 379

Query: 460 DVLVVAG 466
           DV++  G
Sbjct: 380 DVILCTG 386


>gi|326333492|ref|ZP_08199733.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
 gi|325948692|gb|EGD40791.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
          Length = 472

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 102/275 (37%), Gaps = 13/275 (4%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
             A   TN+  DH+D   T++AY       F   L  +   +   DD  + ++   AH+ 
Sbjct: 183 PYAAVVTNVEADHLDQWGTEEAYR-EGFAQFVGRLAPDGFLVAVIDDPGAADLRHVAHSL 241

Query: 264 GCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           G R + VG      +    +         T+     +       +PG   V +AL A  +
Sbjct: 242 GRRFIGVGESELADVRAVDIVLEGTTSSFTVVDGLDELGRITLQIPGRHYVADALAALTV 301

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
            + +G    L+   LE       R E  G  + G R+Y  YAH  + +   L + R++  
Sbjct: 302 GLRLGHSFDLLKAGLESFTGTRRRMERKG-EAAGVRVYDSYAHHPSEIAGDLVSGRSVAG 360

Query: 381 SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIP 437
            GR+IV F      R +     MG++    AD  +V D     ED  PE     +   +P
Sbjct: 361 EGRLIVAFQPHMVSRTRIFGEEMGRVLGA-ADEVVVLDVYLAREDYDPEVTGKLVADAVP 419

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +      EA           D+++  G G
Sbjct: 420 LPPDRVVSVAGLEEAAVELARRARPGDLVLTLGAG 454


>gi|298369634|ref|ZP_06980951.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282191|gb|EFI23679.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 469

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 138/426 (32%), Gaps = 57/426 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA+ +V S+A    +      +    P++     R   L+       G      +A+ G
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAANEQQIPVI----PRALMLAELMRFRDG------IAIAG 113

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    I   +G   +F IG    +++   + RL     I      S  S   
Sbjct: 114 THGKTTTTSLTASILGAAGLDPTFVIG--GKLNAAGTNARLGKGEYIVAEADESDASFLH 171

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  I    TN+  DH+D +       +     F   +P  
Sbjct: 172 --------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFY 211

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A +  D A+ + ++ +                 I+   +  I  + + T+ V  K  +
Sbjct: 212 GKAFLCVDSAHVRAILPKVSKPYATYGLDDTAD--IYATDIENIGAQMKFTVHVNMKGHE 269

Query: 302 FLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   V NAL A G+ + +G     + + L     V  RF+  G      
Sbjct: 270 RKTFGVVLNMPGRHNVLNALAAIGVALEVGAPVEAIQQGLLGFEGVGRRFQKYGDIKLPN 329

Query: 357 R----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
                +  DY H    +   L   R     + +V+        R +       KI     
Sbjct: 330 GGTALVVDDYGHHPVEMAATLAAARGAYPEKRLVLAFQPHRYTRTRDLFEDFTKILNT-V 388

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+ ++T+     E+P        +   I   G    I   +  E     + +L   D+++
Sbjct: 389 DLLVLTEVYAAGEEPIAAADSRALARAIRVLGKLEPIYCESVSELPAMLLNVLQDGDMVL 448

Query: 464 VAGKGH 469
             G G+
Sbjct: 449 NMGAGN 454


>gi|91776623|ref|YP_546379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
 gi|118595665|sp|Q1GYZ9|MURD_METFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91710610|gb|ABE50538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
          Length = 453

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 138/436 (31%), Gaps = 59/436 (13%)

Query: 36  DSRHIQAG-WI----FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           DSR +  G       F    G       F   A  + AE IV S    + +         
Sbjct: 36  DSRALPPGLDAVRQEF---PGMAIHLGPFTAAAFKE-AELIVASPGVPVAEPQVQAAIER 91

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            + VV +   F    ++         ++A+TG +GKS+V + V +IC+ +G  +   G  
Sbjct: 92  GVPVVGDVELFAQARSAH------AKVIAITGANGKSTVTTLVGEICKAAGFKTVVAGNI 145

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   +        + +                +E SS  L+      +   A +  
Sbjct: 146 GLPVLDVIN------DAVDV--------------YVLELSSFQLET--TYSLAADAATVL 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +   QAY NAK R+F     +   A    DDA+S+ +              
Sbjct: 184 NISADHMDRYADMQAYANAKARIFTRAGLQVLNA----DDAWSRGMAAEG-----VAQLT 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                    +    +H+  +  ++   +    +  L        A   A L +   +D  
Sbjct: 235 FGLDAPRSAQDFGLLHDAGEAWLARGQRKLMPVADLNITGLHNAANALAALALCTVLDID 294

Query: 331 LVL--EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            V+  + L     +P R ++V                  +    L         R +V+ 
Sbjct: 295 EVVALQALRDFKGLPHRVQWVADIDGVSFYDDSKGTNVGATVAAL-----HGLNRKLVLI 349

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
             G  + Q    +   +A   A   ++        D   I   +              EA
Sbjct: 350 AGGDGKGQDFAALRAPVA-KHARAVVLI-----GRDAGVIADALQESGVLLEYGDTLEEA 403

Query: 449 IRTAIEMLNKQDVLVV 464
           +  A  + ++ D +++
Sbjct: 404 VVKAFNLADRGDAVLL 419


>gi|281424941|ref|ZP_06255854.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris F0302]
 gi|281400785|gb|EFB31616.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris F0302]
          Length = 459

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 114/365 (31%), Gaps = 41/365 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L   GT GK++ ++    I  +S +         + +         +   + +   
Sbjct: 111 SHKGLCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKNYGTNYILSDSSDYVVIEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               S                       ++      T+   DH+D + T++AY  +    
Sbjct: 171 EFDRSFHW--------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E +          A   +    MK+    G +V     +    H + +   + +     
Sbjct: 211 TELIQ------PGGALIIHRDLEMKQHVQEGVKVYDYSREAGDFHAENIVIDNGEISFDF 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               ++  +     P    + NA+ A  +    G  +  +   +     V  RF+F    
Sbjct: 265 VSPIENVKNIKLGQPVPINIENAVAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDF-KIK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
           +       DY H    +    ++++ +  GR I V        R +           +  
Sbjct: 324 NDKHVFLSDYGHHPKEVLQSARSLKELFKGRKITVMFQPHLYTRTRDFYHEFADALSNF- 382

Query: 411 DIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  ++T+  P  E+P +      I   +  G+   I    R + +   ++     DVLVV
Sbjct: 383 DEVVLTEIYPAREEPIEGVTSKLIFDNLKPGVEKTII---RKDDVLDYVK-SRDFDVLVV 438

Query: 465 AGKGH 469
            G G+
Sbjct: 439 LGAGN 443


>gi|254786999|ref|YP_003074428.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Teredinibacter
           turnerae T7901]
 gi|259509791|sp|C5BP36|MURD_TERTT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|237684910|gb|ACR12174.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Teredinibacter
           turnerae T7901]
          Length = 453

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 123/397 (30%), Gaps = 46/397 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S     +           I +V +   FL              ++ +TG++GKS
Sbjct: 74  AAEIVLSPGVDRRTDFIQAALKNNISIVGDIELFLREV--------QVPVVGITGSNGKS 125

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + +  +  ++G  +   G             L     +           +      +
Sbjct: 126 TVTALMAAVGAKAGFKTCAAGNIG----------LPVLDAL----------QENAELYIL 165

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+     G+ +      N+  DH+D +     Y  AK R++             
Sbjct: 166 ELSSFQLESVSRPGLTV--ACMLNVSEDHMDRYNRFVDYCMAKQRIYFGAQNVVYNIDDK 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                  + + R   +  + +  G    +           K  +    + K         
Sbjct: 224 LTQPPIVDGVARRGFSLSKPIEEGESAFYFSADTGNLCAAKDNLINIDQIKI-------F 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L    +  A+ I  A     +++   +  R ++V        I    A    
Sbjct: 277 GRHNVANVLAVFAMADALNITRAATCAAVQEFSGLDHRCQWVAKKRGVTFINDSKATNVG 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + +  +  +    S + I++   G  +D       GK+      + I+        D   
Sbjct: 337 AAQAAIAGLSA--SFKRILLIAGGDGKDANFFS-FGKLVDAHVAVLIL-----MGRDAGA 388

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A+ +      ++     EA+  A     + D++++
Sbjct: 389 I-ADCVSDTTPVVQAQTMTEAVEVAFSSAEEGDLVLL 424


>gi|257784286|ref|YP_003179503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
 gi|257472793|gb|ACV50912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
          Length = 478

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 148/452 (32%), Gaps = 30/452 (6%)

Query: 28  RKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86
           R++      DSR +Q G +FVA  G K +G+ ++  A   GA  +V S   +     +  
Sbjct: 23  REVAGCAVIDSREVQQGSLFVAFAGEKVNGNSYLLSAAQAGAAVVVASEPVTDNLLDSLA 82

Query: 87  RSNTPILVV--DNTRKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLS 143
            +   +L    D+   FL   A+     HP   ++ VTG+ GK++    +++    +   
Sbjct: 83  ATGASVLEAADDDCEAFLLALAAAWREAHPNWLVVGVTGSVGKTTTKEMLRRGIGATRRV 142

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G  + +        L+TP    +      ++  G        +            +
Sbjct: 143 HATAGNHNNL-IGLPLTVLSTPEDTEVLVLELGMNHAGEITRLTSVA------------R 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP------AIIYADDAYSKEVM 257
                 TN+G  HI    +++    AK  +   +    S       A       +  +  
Sbjct: 190 PTVAVITNVGTSHIGLLGSRKNIARAKAEIVSGMRAFGSIEPTLIQASAGDYTKFIADKF 249

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNAL 316
            R     C+ +           K +         TIS            +PG   V + L
Sbjct: 250 ARPARVVCKTVGATEDDVMSAQKVILDEKGLPTATISASSGWSRTVTLEVPGRVVVDDLL 309

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A      +G+D     E +E++     R   +        I   Y  + NS    L  +
Sbjct: 310 LALEAVETLGLDLDAAAEAIEQMPATRMRLSVLDATCGAKIIDDSYNASPNSTAAALDVL 369

Query: 377 RTIT-SGRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTDDNPRSEDPEKIRAE 431
             +   GR I + G  G+    ++ + G     IA    D           E  E     
Sbjct: 370 MQMPAEGRRIALIGEIGELGPEEKRLHGYVGAYIAAKNPDFVAFVGTGAAREMVEA-ARV 428

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +        +  +  EA+     +L + DVL+
Sbjct: 429 MGFSEDKIEQFNDVNEALAVLGPVLKQGDVLL 460


>gi|220904385|ref|YP_002479697.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|254765997|sp|B8IZU2|MURC_DESDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219868684|gb|ACL49019.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 457

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 140/427 (32%), Gaps = 53/427 (12%)

Query: 56  GHLFIPQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A    G   ++V S     D    + +    + +    + L+       G   
Sbjct: 56  GH-----AAENVGDVQVLVKSTAISDDNPELVEARKRNIAIIPRAEMLAELMRLRQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S    I   +GL    I     ++ +  +  L     +      
Sbjct: 108 ---IAIAGTHGKTTTTSLTASIFDEAGLDPTVI-IGGRLNVYGANAHLGHGEYLIAEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S                          +  I    TN+  DH+D+++T++A  +A    F
Sbjct: 164 SD--------------------GSFLCLLPIINVVTNVDEDHLDHYKTREAINSA-FVQF 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     I+  DD    E++ +                      + +    +     
Sbjct: 203 MNNVPFYGLNIVCGDDPGVLELLPQVKRPVLTYGFAEDNAL--RAVPLESGRISRFQVWL 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + K  +   P PG   + NAL + G  + +GI        L     V  RFEF G   +
Sbjct: 261 HDEKLGEVSLPQPGRHNILNALASIGAAMEVGISFEKCAAGLCGFKGVGRRFEFKG-EKQ 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADI 412
           G  +  DY H    +   L   R +  GR I V      R        G+     +  D 
Sbjct: 320 GVTVVDDYGHHPAEIAATLATARQVFEGRRI-VAAFQPHRFSRTEAHFGEFCKVFNNVDQ 378

Query: 413 AIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            ++T+    SE+P          + IR      +  F    +   A+    ++L + DVL
Sbjct: 379 LLLTEIYAASENPIPGVSGQSLAQGIRQVSSTPVEYFQTLDDLARALP---DILQEGDVL 435

Query: 463 VVAGKGH 469
           +  G G+
Sbjct: 436 LTLGAGN 442


>gi|90020493|ref|YP_526320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
 gi|122063257|sp|Q21MH1|MURD_SACD2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89950093|gb|ABD80108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
          Length = 456

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 135/397 (34%), Gaps = 45/397 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S    L            + ++ +   FL+             ++ +TG++GKS
Sbjct: 76  AKQIVLSPGVPLATPEIQQAKAAGVEIIGDIDLFLAE--------RKAPVVGITGSNGKS 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V    + +G++    G                             +   V    +
Sbjct: 128 TVTTLVGLAAENAGMNVAVGGNIGVPVLDLL-------------------ADADVELYVL 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +L      N+  DH+D + +   Y  AK R++             
Sbjct: 169 ELSSFQLES--VKRAQLDVACVLNVSPDHMDRYPSLAHYCQAKQRIYFGAKKIVYNLEDT 226

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                    ++R   +  + +    +        V   ++   ++++ +         + 
Sbjct: 227 LTIPPVMAGVERYGFSSKKAVEENEKH-------VLLNNDTNALSLNGQDVFSVADIKIA 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  +C A  I  A + + L++   +P R ++V   +    I    A    
Sbjct: 280 GAHNLKNALAALAICDAANIPFAGLKQALQEFEGLPHRCQWVANKNGVTYINDSKATNIG 339

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S +  ++ +         +V   GGD        +GK+        ++        D  K
Sbjct: 340 SAQAAIEGLAGQFKN---IVLIAGGDGKGADFSSLGKVINQYVSAVVLI-----GVDAPK 391

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I+A +   +   ++      A++ A  +    D++++
Sbjct: 392 IQAVVDPQV-MCVKAQTLNAAVKQAALLAKSGDLVLL 427


>gi|84501756|ref|ZP_00999928.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
 gi|84390377|gb|EAQ02936.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
          Length = 469

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 79/416 (18%), Positives = 133/416 (31%), Gaps = 51/416 (12%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE +V+SSA      +     R   P++        L            ++ +A+ GT G
Sbjct: 71  AEVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRL---------KSNIAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  +    G+    I     I ++  + R+                      +
Sbjct: 122 KTTTTTMVATLLDAGGIDPTVI-NGGIIHAYGSNARVGLGE-----------------WM 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+D+              F   +P    A+
Sbjct: 164 VVEADESDGTFNRLPATI---AVVTNIDPEHMDHWGDFDTLRQ-GFLDFVSNIPFYGLAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FL 303
              D    + ++ R  +          Q     +             +     D      
Sbjct: 220 CCTDHPEVQNLVGRITDRRVATYGFNAQADIRAVNLTYRKGVAHFDVLLQAEGDRIDGCS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  +  DY 
Sbjct: 280 LPMPGDHNVSNALSAVAVARHLGMKKDEIRTALANFGGVNRRFTRVG-EVGGVTVIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    +  +LK  R  T GR+I V      R      +          AD+  + +    
Sbjct: 339 HHPVEIAAVLKAARQATEGRVIAV--HQPHRYTRLHTLFEDFCACFNEADVVAIAEVYAA 396

Query: 422 SED--PEKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEMLNKQDVLVVAGKG 468
            ED  P   R +++ G+     +  R  AI       R   E   + D++V  G G
Sbjct: 397 GEDPVPGATRDDLVAGLIRHGHRHAR--AINSEDDLERLVREQAQEGDMVVCLGAG 450


>gi|209519096|ref|ZP_03267902.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
 gi|209500468|gb|EEA00518.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. H160]
          Length = 467

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 134/430 (31%), Gaps = 53/430 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPEN 116
           I  A     GA+A+VVS+A    +       +  I +V   R   L+       G     
Sbjct: 55  IGHAAENIEGADAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I      S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH+D +    A        F 
Sbjct: 165 DASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP    A++  DD   KE++        R        +   +             +  
Sbjct: 205 HRLPFYGIAVLCVDDPNVKEILPFVSKPIIRYGFAAE-AQVRAVNVEAREGRMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR- 354
           +    D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G     
Sbjct: 264 DAPSLDITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVT 323

Query: 355 -------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                     +  DY H    +   +   R    GR  +V      R    R        
Sbjct: 324 SDGQVAGSYTLVDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVK 382

Query: 408 DLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNK 458
            L+  D  ++T+     E P        +   +           + ++ +  A+   +  
Sbjct: 383 VLSTVDALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVRD 442

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 443 GDVVITMGAG 452


>gi|284172781|ref|YP_003406163.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
 gi|284017541|gb|ADB63490.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
          Length = 810

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +++I+     F+   PL G  Q  NA VAA L   +       +    +    PGRFE +
Sbjct: 235 EISIAGPKWSFETRLPLVGPHQATNAGVAATLADQVAGVDPESIARGLRDSYWPGRFEVM 294

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
            T        +D AH   + E +   +   +   + +VFG   ++D      M   AL  
Sbjct: 295 STTPL---AILDGAHNPGACETLASLVDRYSFDDLHLVFGAMREKD---HRGMA-AALPS 347

Query: 410 ADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D   + + D PR+E+ + + A            G+ +EA   A+   ++ D ++V G
Sbjct: 348 PDALYLCEPDVPRAENTDALAAAFDDRPATIDCAGSVLEATERALSAADEGDCVLVTG 405


>gi|221638509|ref|YP_002524771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159290|gb|ACM00270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase precursor
           [Rhodobacter sphaeroides KD131]
          Length = 477

 Score = 63.8 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 149/457 (32%), Gaps = 44/457 (9%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             VS D+R +  G +FVA+  ++ DGH F+ +A+A+GA A +VS           +  + 
Sbjct: 25  TGVSIDTRSLGPGDLFVALT-DQRDGHAFVAEALARGAAAALVSR------CPEGLPEDA 77

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+L+V +  + L         +    ++ VTG+ GK+S    ++      G         
Sbjct: 78  PLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKTSTKEMLRATLGGQGTVHAAEASY 137

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
           +               P+ LA+  + +    V        +H  +   L  +     +  
Sbjct: 138 NNHWGV----------PLTLARMPADVDFAVVEIGM----NHPGEIAPLSRLARPHLALI 183

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
                         A    +     E L     AI+ A    S  +  RA   G   ++ 
Sbjct: 184 TTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARAAALGVPAVTF 243

Query: 271 GYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           G        L  +           S  G  F F    PG     NAL       A+G+D 
Sbjct: 244 GQSADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATLAAAEALGLDL 303

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNS-----------LEMILK 374
            +    L       GR                  +D A  +N                  
Sbjct: 304 TIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASLELLAAMAPTD 363

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKIRAEI 432
            +  I +GR I + G   +    +  +   +A    LA+IA+V    PR     +   E 
Sbjct: 364 GVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPR----MRALHEA 419

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG-KG 468
           +             E +  A  +++  D+++V G KG
Sbjct: 420 LPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKG 456


>gi|299142302|ref|ZP_07035435.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris C735]
 gi|298576391|gb|EFI48264.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris C735]
          Length = 459

 Score = 63.4 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 114/365 (31%), Gaps = 41/365 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L   GT GK++ ++    I  +S +         + +         +   + +   
Sbjct: 111 SHKGLCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKNYGTNYILSDSSDYVVIEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               S                       ++      T+   DH+D + T++AY  +    
Sbjct: 171 EFDRSFHW--------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E +          A   +    MK+    G +V     +    H + +   + +     
Sbjct: 211 TELIQ------PGGALIIHRDLEMKQHVQEGVKVYDYSREAGDFHAENIVIDNGEISFDF 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               ++  +     P    + NA+ A  +    G  +  +   +     V  RF+F    
Sbjct: 265 VSPIENVKNIKLGQPVPINIENAVAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDF-KIK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
           +       DY H    +    ++++ +  GR I V        R +           +  
Sbjct: 324 NDKHVFLSDYGHHPKEVLQSARSLKELFKGRKITVIFQPHLYTRTRDFYHEFADALSNF- 382

Query: 411 DIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  ++T+  P  E+P +      I   +  G+   I    R + +   ++     DVLVV
Sbjct: 383 DEVVLTEIYPAREEPIEGVTSKLIFDNLKPGVEKTII---RKDDVLDYVK-SRDFDVLVV 438

Query: 465 AGKGH 469
            G G+
Sbjct: 439 LGAGN 443


>gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 474

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 136/394 (34%), Gaps = 31/394 (7%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++           ++I  +  I+ V +  + +   A+  + +    + AVTG++GKS
Sbjct: 88  AAAVL-----PEGISWSSIPKSVAIVRVSDVNQAIWRLANWNWRQVRPQVAAVTGSAGKS 142

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  I +RS       G  +T +         +P                   + +
Sbjct: 143 TTTSMVTSILKRSRRVVHTQGNLNTFTYLPSYLLRLSP-------------GDEFLMLEM 189

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S      +   ++   G+ TN+G  H            AK  L + L P  +  +  
Sbjct: 190 GMKSFNNIARQCRVVRPEVGAVTNVGEAHAGQLGGVHRVVKAKQELIDGLRPGAT--LYL 247

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D    + +      G            I    +    N     +  EGK   F  P  
Sbjct: 248 NADCLRSKQLSTRRFRGSVYTFGIRNPADIQGSNIQYSTNGVSFDVMTEGKRGRFFIPTW 307

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL A G+  A+GI    + + L K+ +   R + +  +     I   +    +
Sbjct: 308 GDHNVLNALAAIGIARALGIGFHQIRDGLAKVKLPRMRLQRIRGSHGRTLINDAWNANPS 367

Query: 368 SLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           +++  L  +R ++S R  I V G     G   +     +G+ A  +    ++T      +
Sbjct: 368 AMKAGLSVLRYLSSKRPGIAVLGDMMELGGYTRAGHREVGRFAARMNLHQLIT----YGQ 423

Query: 424 DPEKI-RAEIIHGIP--GFIEKGNRIEAIRTAIE 454
              +I R  +  G+         NR   +R  + 
Sbjct: 424 KAREIGRTALAAGMDPHRVRHFSNRGALLRHLLS 457


>gi|301057830|ref|ZP_07198899.1| bifunctional protein FolC [delta proteobacterium NaphS2]
 gi|300448141|gb|EFK11837.1| bifunctional protein FolC [delta proteobacterium NaphS2]
          Length = 427

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRP 400
            PGR + V        I +D AH + ++  + K + R  +  ++I+V G   D+D    P
Sbjct: 285 WPGRMQIVKE---NPTILLDGAHNAGAMRALAKTVLRDFSYEKMILVIGIMADKDI---P 338

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            + +  + ++D  + T     R+ DP  +  +            +  EA+  A  +   +
Sbjct: 339 ALLRAIVPMSDRVLYTRPVYSRAADPRVLMEKAGSFNTPGEIVFHLSEALEKAEAIAGPK 398

Query: 460 DVLVVAG 466
           D++VV G
Sbjct: 399 DLIVVCG 405


>gi|311741530|ref|ZP_07715354.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303700|gb|EFQ79779.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 487

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 141/428 (32%), Gaps = 60/428 (14%)

Query: 70  AIVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD     A   ++ P++   +    L               + + GT GK
Sbjct: 75  VVVTSFAAIPQDNPELVAAKDNDIPVIRRSDLLAALME---------GHKQVLLAGTHGK 125

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +GL          ++    +    T          S  S    +   
Sbjct: 126 TSTTSMTVSAMQHAGLD-PSFAIGGQLNRAGTNAHGGTGEAFVAEADESDASLLRYS--- 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  T +  DH+D+  +++AYF       + + P+    ++
Sbjct: 182 -----------------PDVAVLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------------KVCAIHNKQQVTIS 294
            A+D ++    +RA   G  V++ G   K                     +     + + 
Sbjct: 225 CAEDEHAARAGERALERGINVVAYGSPEKSFTSTVPLAAELVREETTAEGMDTTVNLDLP 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---T 351
              +   +   +PG   V N++ A    +  G   A + E L     V  RFE+ G    
Sbjct: 285 SVSETVRYELQIPGHHMVLNSMGALIAGVLSGGAPAAIAEGLADFGGVRRRFEYRGSVDK 344

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-----TITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
             +  R++ DYAH    +  +L+  R         GR+I  F      R         + 
Sbjct: 345 QGKPVRVFDDYAHHPTEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQ- 403

Query: 406 ALDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           AL LAD A+V D     E P +     I  + +      I + +   A R  + ++   D
Sbjct: 404 ALSLADAAVVLDIYGAREQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGD 463

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 464 VVLTIGAG 471


>gi|300774444|ref|ZP_07084307.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506259|gb|EFK37394.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
          Length = 445

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 119/362 (32%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         I+A+TG++GK++  S +  I +  GL+    G               
Sbjct: 93  EFASEFTD---AKIIAITGSNGKTTTTSLIYYILKNDGLNVGLGGNIG------------ 137

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQT 222
                        ++ +   +  +E SS  LD   +   +       NL +DH   Y+  
Sbjct: 138 -------YSFAKQVADENHEYYVLEVSSFQLDD--IQNFRPYISLLLNLSQDHLDQYNYN 188

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AK R+ E             D+     + K    A     S   + +       
Sbjct: 189 YEEYALAKFRIAENQENDNFFIYNKDDEMSKNLLEKLEIKAKMIPFSTKEKLQEGGFVNE 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             I  K +   S++  +      L G   V N+L A+     + I++  +   L     V
Sbjct: 249 DEIVVKMKDEFSMKVDEL----SLLGNHNVANSLAASIAGKILEINNESIRHSLMTFQAV 304

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R EFV        I    A     +      + ++ +  + +V G     D  +   +
Sbjct: 305 EHRLEFVTEIDGVKYINDSKATN---VNATYYALESMKTPTVWIVGGLDKGNDYTEIEDL 361

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            K  +    I  +  DN      +KI            +  +  EA+R +  +  K D +
Sbjct: 362 VKRKVKA--IVCLGIDN------KKIIDFFKDKKEFIYDTSSMEEAVRISKSLAKKGDTV 413

Query: 463 VV 464
           ++
Sbjct: 414 LL 415


>gi|226950592|ref|YP_002805683.1| FolC bifunctional protein [Clostridium botulinum A2 str. Kyoto]
 gi|226840954|gb|ACO83620.1| FolC bifunctional protein [Clostridium botulinum A2 str. Kyoto]
          Length = 429

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 114/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +  + + SG                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISTVLKESGYKVGMYTSPYIEEFEERIQINGHNITKEDLGYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    +        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEEITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CELIKVEDNLINIEIEIIGKNMGQQSFKLKTKENTYNICLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKLGIKIEKIHIISALKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E  +++   ++     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVAPHNDRGESSKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A       D++++ G
Sbjct: 389 CEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|303235636|ref|ZP_07322243.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
 gi|302484083|gb|EFL47071.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
          Length = 453

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 117/362 (32%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G      G               
Sbjct: 104 EFAGRYTN---SKMVCITGSNGKTTTTSLIYHIFKNAGYDVGLAGNIGK----------- 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +  Q
Sbjct: 150 ---SLALQI-----AEEPHEYYVIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDFQ 199

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   KE   I + DD     + K       + +   +           
Sbjct: 200 FEKYADAKMRIIQNQTKEDSFIYWNDDPV---IKKELEKFDVKAVQYPFSELKEKGSIGY 256

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               +  +              L G+  +YN+L A       GI    + + L     V 
Sbjct: 257 IEEGQYILETPTPFNMEQEDLSLTGKHNIYNSLAAGLASNISGITKENIRKSLSDFPGVE 316

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +    I    A   ++    L+++RT       ++   G D+     PI  
Sbjct: 317 HRLEKVCKVAGVQYINDSKATNVDACWYALESMRT-----PTILIIGGKDKGNDYTPIKE 371

Query: 404 KIALDLADIAIVTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +      +  +  DN +  E+ +++      GIP   +  +  E +    EM    D +
Sbjct: 372 LVKEKCVGLVYLGADNKKLHENFDEL------GIP-VRDTHSMKECMDACYEMAKSGDTV 424

Query: 463 VV 464
           ++
Sbjct: 425 LL 426


>gi|89892892|ref|YP_516379.1| hypothetical protein DSY0146 [Desulfitobacterium hafniense Y51]
 gi|89332340|dbj|BAE81935.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 885

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 75/214 (35%), Gaps = 11/214 (5%)

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           ++ +    + L+VG    F+    +      Q   I    KD    +       + NAL 
Sbjct: 633 EKDNLTIRKHLAVGGIAVFVRRGNILLCQGDQSHKI-CGVKDLPVTWNGKALHNLQNALA 691

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           A  +  ++G+ +  +   L +    P   R         G ++++DY H +  ++ I + 
Sbjct: 692 AIAVGWSLGLKAEGIRISLSEFTSDPECNRGRLNPYTIGGVQVFIDYGHNAAGIKAIAQT 751

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR----- 429
           +R   +  ++      GDR       + ++A       I+ +D + R   P +I      
Sbjct: 752 LRKFKAPAVVGCVTVPGDRPDETIREVARVAARGFHRLIIREDGDLRGRRPGEIAGMIME 811

Query: 430 AEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDV 461
             I  G+            EA    ++     ++
Sbjct: 812 EAIASGMDPRRISVVLPEREAFCHGLDTCKPGEI 845


>gi|296876961|ref|ZP_06901005.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431996|gb|EFH17799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 449

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 137/389 (35%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYTNPMVEKALEKGIPVL----TEVELAYLIS------DAPIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQGGLLSGNIGFPASQV------------------AQTATEKEVLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   HIDYH + + Y  AK  L + +  K+   + +  D     
Sbjct: 174 -MGIEAFHPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEKDVIVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K         +      + +    +     K +  + +   +      +PG   V NA
Sbjct: 228 LAKELATKTKARVLPFSTIEKVDGAYLEDGLLKFKGEVVMRADEL----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +     +++ ++ E L     V  R ++V             +     +    K 
Sbjct: 284 LATIAVAKVRSVENEVIKETLSAFGGVKHRLQYVDEIQGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L ++ I+ +  PR       RA    G
Sbjct: 341 LSGFDNNKVILI-AGGLDRGNEFDELVPHITG-LKEMVILGESAPR-----VKRAADKAG 393

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +P +++  +  +A + A ++ +  DV+++
Sbjct: 394 VP-YVDAADVADATKKAFDLASPGDVVLL 421


>gi|332710219|ref|ZP_08430170.1| cyanophycin synthetase [Lyngbya majuscula 3L]
 gi|332350998|gb|EGJ30587.1| cyanophycin synthetase [Lyngbya majuscula 3L]
          Length = 892

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 10/143 (6%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +      +   PGR      N       VDYAH + S E +   +R    G    + G
Sbjct: 714 EALTTFRASVDQTPGRMNL--FNLGSYHALVDYAHNAASYEALGSFVRN-WPGECFGIVG 770

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI------PGFIEK 442
             GDR       +G+++  + D  I+  DD+ R          I  GI        +   
Sbjct: 771 GPGDRRNEDFIELGRLSAKIFDRIIIKEDDDLRGRPSGDAAELICKGIGQEKSESNYEII 830

Query: 443 GNRIEAIRTAIEMLNKQDVLVVA 465
               EAI   ++ +    ++V+ 
Sbjct: 831 LRETEAIERGLDKVADGGLVVIL 853


>gi|304316506|ref|YP_003851651.1| FolC bifunctional protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778008|gb|ADL68567.1| FolC bifunctional protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 425

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 13/195 (6%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALV 332
           + +  V    +     +       +    + G+ Q+YNA +A      +       S  V
Sbjct: 222 MDINDVKIKESNSNHQVFDYKNYKNLKISIIGKHQIYNASLAVMAVEKLIQYGINISEDV 281

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           ++        PGR E +        I +D AH    +  + + +   T  R+I+V G   
Sbjct: 282 IKRGLINAKWPGRIEVISKLPL---IVIDGAHNPQGMAALKEALNLFTYNRLILVIGMLK 338

Query: 393 DRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           D+D      M K+ +  AD+ I T   + R+   E++  +I       +   N  +AI  
Sbjct: 339 DKDTD---SMLKLIVPEADLIITTKPISDRAYTAEELSQKIA--YDDVLHFENIDDAINE 393

Query: 452 AIEMLNKQDVLVVAG 466
           A++   K D+++  G
Sbjct: 394 ALKSAGKNDLILFCG 408


>gi|237796978|ref|YP_002864530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
 gi|259509786|sp|C3KVT7|MURD_CLOB6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|229261229|gb|ACQ52262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
          Length = 458

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 118/360 (32%), Gaps = 47/360 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD             G    ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNNLLVLNKDDD----------LTNGMENEALGDVLKFSLVEKVYNGAYL 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+      +          L+AA   +   +    +         V  R E
Sbjct: 260 SNNKLTMQGKEVCDSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       R +++   G D+    +P+    A 
Sbjct: 320 FIREVNGVKYYNDSIASSPSRTLAGLNSFE-----RPVILIAGGYDKKIPFKPL----AE 370

Query: 408 DLADIA---IVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              D     I+  D  N      EK+ +     I   +   +  EA++ A  M  K D++
Sbjct: 371 GGYDKIKILILMGDTKNKIKSAFEKVISHKKCEIE-IVIVNSMEEAVKVADNMAEKGDII 429


>gi|292490622|ref|YP_003526061.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
 gi|291579217|gb|ADE13674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
          Length = 452

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 151/435 (34%), Gaps = 58/435 (13%)

Query: 36  DSRHIQAGWIFVA-----IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
           DSR    G   +A     + G       F   A+ Q AE +V+S   +L + +  +    
Sbjct: 41  DSREAPPG---LAALQEQVPGVAVRLGDF-EVALMQQAERLVISPGVALSEPAIQVAQAR 96

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            I V+ +         +         ++A+TG++GKS+V   V+ + +++G      G  
Sbjct: 97  GIPVLGDI-----ELFAYWAQAP---VIAITGSNGKSTVTVLVEAMARQAGKKVLSGGNL 148

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
              +    +  +     + L                   SS  L+      +  +A    
Sbjct: 149 GLPALELLEKPVPDLYVLEL-------------------SSFQLET--TSTLNAVAACIL 187

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +   +AY  AK R++         A++   D      + +      R    
Sbjct: 188 NISPDHMDRYPNLEAYVQAKGRVYHGTG-----AMVINADDVQVAGLAQPERHCLRFTLG 242

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   L++        +     E       FPL G   + NAL A  L  A G+   
Sbjct: 243 APAADEYGLRERAGETWLAR---GHELLLPARQFPLVGRHNLANALAALALGEAAGLPQL 299

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L  L +   +P R E+V   +              +    ++ +     G+++++ G 
Sbjct: 300 AMLSALREFRGLPHRCEWVAQANGVDWYNDSKGTNVGATVAAIEGL--HCQGKLVLIAGG 357

Query: 391 GGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G +     P+   +    A   ++   D PR E      A + + +P +    +  EA+
Sbjct: 358 VG-KGADFSPLCAPL-SRRARAVVLMGQDAPRLE------AALANSVPLYQ-VNDMGEAV 408

Query: 450 RTAIEMLNKQDVLVV 464
             A  +    D +++
Sbjct: 409 NKASALAEPGDSVLL 423


>gi|149914524|ref|ZP_01903054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
 gi|149811317|gb|EDM71152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
          Length = 496

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 54/428 (12%), Positives = 114/428 (26%), Gaps = 55/428 (12%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           I     DG      A    A  IV   +   Y   + +        + V ++   F +  
Sbjct: 86  IKDLSRDG------AFDDIACLIVSPGIPHLYPQPNKAVAKALQAGVPVDNDIGLFFASL 139

Query: 106 --ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A          ++AVTG++GKS+ ++ +  +   +G      G               
Sbjct: 140 GGADWAVHDVAPRVVAVTGSNGKSTTSALIHHVLHEAGKDVQLAGNIGRGVLDIDPPGDG 199

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L+   + L+      V+V  +       R  G+     +   L  +        
Sbjct: 200 GVVVLELSSYQTELARALTPDVAVFTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAVI 259

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                  + +          A   A       V++ + +            +   L +  
Sbjct: 260 GIDEPEGLFM----------AGQLATAPGDDRVIRISVDRKLAGPGWSVFARKGFLSEYR 309

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               +  + +            LPG+    NA  A   C ++ +   ++         +P
Sbjct: 310 KGKQQGAIDLREIKG-------LPGQHNHQNACAAYAACRSLSLSPKVIERAFHSFAGLP 362

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQG 397
            R + +        +    A   +S    L     I            +     G R+  
Sbjct: 363 HRSQVIAEKDGVTFVNDSKATNVDSALKALNAFANIRWICGGLQKEGGLAGLEPGLRNVL 422

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           K  ++G+ A   A     T+                              A+  A+    
Sbjct: 423 KAYVIGREAAQFALQLTGTE---------------------AETCTTMQTAVAHAMADAK 461

Query: 458 KQDVLVVA 465
             + +++A
Sbjct: 462 PGETVLLA 469


>gi|219666155|ref|YP_002456590.1| cyanophycin synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536415|gb|ACL18154.1| cyanophycin synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 885

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 75/214 (35%), Gaps = 11/214 (5%)

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           ++ +    + L+VG    F+    +      Q   I    KD    +       + NAL 
Sbjct: 633 EKDNLTIRKHLAVGGIAVFVRRGNILLCQGDQSHKI-CGVKDLPVTWNGKALHNLQNALA 691

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           A  +  ++G+ +  +   L +    P   R         G ++++DY H +  ++ I + 
Sbjct: 692 AIAVGWSLGLKAEGIRTSLSEFTSDPECNRGRLNPYTIGGVQVFIDYGHNAAGIKAIAQT 751

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR----- 429
           +R   +  ++      GDR       + ++A       I+ +D + R   P +I      
Sbjct: 752 LRKFKAPAVVGCVTVPGDRPDETIREVARVAARGFHRLIIREDGDLRGRRPGEIAGMIME 811

Query: 430 AEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDV 461
             I  G+            EA    ++     ++
Sbjct: 812 EAIASGMDPRRISVVLPEREAFCHGLDTCKPGEI 845


>gi|261349377|ref|ZP_05974794.1| UDP-N-acetylmuramyl tripeptide synthase [Methanobrevibacter smithii
           DSM 2374]
 gi|288861741|gb|EFC94039.1| UDP-N-acetylmuramyl tripeptide synthase [Methanobrevibacter smithii
           DSM 2374]
          Length = 478

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/412 (12%), Positives = 127/412 (30%), Gaps = 26/412 (6%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A +++       +      N P++VVD      +        K       + +TGT+GKS
Sbjct: 61  ACLITQTPQDGAWDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +  +  I + +G+       + +  +   D  ++      +       ++  + ++ +
Sbjct: 121 TTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEV------KNNGKLDYLVI 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E S        L   K  A    +  +  +             +   +E+  + +     
Sbjct: 175 EVSEVQGWLGNLM--KHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNA 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  +                           K   ++    +    +    +   P  
Sbjct: 233 IGDGVTVLNYDDDLVMKLTPKHPFLCSMNNMDSKNPNVYYDNGIFYEGKRILENKDLPFT 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + N L A   CI++ +D   ++E ++    +  RF  +        I  D+AH  +
Sbjct: 293 SHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLH---ENPLIVDDFAHNPD 349

Query: 368 SLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDNPR- 421
            ++  +   R + +      VV    G R      +  +   +  D     +++  N   
Sbjct: 350 GIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNTKLVLSSSNDVV 409

Query: 422 -------SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   E+ E     +      +    N  + ++   +  +  D++++ G
Sbjct: 410 DHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILLIG 461


>gi|222446083|ref|ZP_03608598.1| hypothetical protein METSMIALI_01732 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435648|gb|EEE42813.1| hypothetical protein METSMIALI_01732 [Methanobrevibacter smithii
           DSM 2375]
          Length = 478

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/412 (12%), Positives = 126/412 (30%), Gaps = 26/412 (6%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A +++              N P++VVD      +        K       + +TGT+GKS
Sbjct: 61  ACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +  +  I + +G+       + +  +   D  ++      +       ++  + ++ +
Sbjct: 121 TTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEV------KNNGKLDYLVI 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E S        L   K  A    +  +  +             +   +E+  + +     
Sbjct: 175 EVSEVQGWLGNLM--KHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNA 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  +                           K   ++    +    +    +   P  
Sbjct: 233 IGDGVTVLNYDDDLVMKLTPKHPFLCSMNNMDSKNPNVYYDNGIFYEGKRILENKDLPFT 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + N L A   CI++ +D   ++E ++    +  RF  +        I  D+AH  +
Sbjct: 293 SHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLH---ENPLIVDDFAHNPD 349

Query: 368 SLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDNPR- 421
            ++  +   R + +      VV    G R      +  +   +  D     +++  N   
Sbjct: 350 GIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNTKLVLSSSNDVV 409

Query: 422 -------SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   E+ E     +      +    N  + ++   +  +  D++++ G
Sbjct: 410 DHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILLIG 461


>gi|261417495|ref|YP_003251178.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373951|gb|ACX76696.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328089|gb|ADL27290.1| putative UDP-N-acetylmuramate--alanine ligase murC [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 475

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 135/422 (31%), Gaps = 59/422 (13%)

Query: 67  GAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           G  A+VVS+A      D         P++      + L+  +           +A++GTS
Sbjct: 71  GLTAVVVSTAIEDSNPDLKRAKELGVPVMHRS---EMLAKISKE------ARTIAISGTS 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+V + V  I   +GL    +     ++             +     +    S     
Sbjct: 122 GKSTVTAMVYHILDYAGLQPSVMTGAGLVN-------------LQAQGKIGNAVSGKGEW 168

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  E         R +      G   N+ +DH +          +++        +   +
Sbjct: 169 LVAEVDESDGTLVRYE---PEIGVILNIDKDHKEI---------SELEQIFLKFSQNVLS 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             +         + +  +AG            +      ++    Q  +    +   F  
Sbjct: 217 AGHILIVNDAHPLAKKFSAGREFDFGYESYVSVQGIDFKSVGTHIQFRVRHGNELVKFEI 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG+  + NAL A    +  G+      + L     V  R + +G    G  +  D+AH
Sbjct: 277 PLPGKHNMENALAATAAALRAGVSLHTCADALSSFPGVFRRHQILG-TFNGITLVDDFAH 335

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-------DRD------QGKRPIMGKIALDLAD 411
               +   +K+ +  T GR+I  F   G        +D      +  RP M        D
Sbjct: 336 NPAKIAASIKSAQDFTEGRVIAWFQPHGFGPTRFLRKDLVDFIAKTLRP-MDMDFDRKND 394

Query: 412 IAIVTDDN------PRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   ++         R      +  + I+ G    I   +R E  +  +E     D +++
Sbjct: 395 VMFFSEIYYAGGTVTRDISAGDLADDLILKGCE-AIYIADRNECAKKMLEYAEPGDTILL 453

Query: 465 AG 466
            G
Sbjct: 454 MG 455


>gi|312136106|ref|YP_004003444.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
 gi|311776157|gb|ADQ05644.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
          Length = 455

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 140/407 (34%), Gaps = 42/407 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    + +    L +    +FL L          +N++A++GT GK++  S
Sbjct: 64  VIYTAAISKDNPELLAAKRMNLKIYERAEFLGLLMKDF-----KNVIAISGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +   +   + +     +  + +   + +       S             
Sbjct: 119 MIGYILKKANYNPTVL-VGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLKFN-------- 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +P     I   DD 
Sbjct: 170 ------------PTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPASGFLIANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K+++   +     + +      F         + +  V  + +         +PG   
Sbjct: 217 NVKDIISELNTQIICISTKEKTDIFADNISCSDGYYEFDVKNNNDKILAHIKLNIPGFHN 276

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYNAL A  +   +G++S  +   + +      R E  G    G  +Y DYAH    ++ 
Sbjct: 277 VYNALAAFAVASKLGVESITIEHAIAEFCGASRRLEKAG-EFDGICLYDDYAHHPTEIKA 335

Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR--------- 421
            L  ++ ++ G++  +F      R +       +    LAD  I+TD             
Sbjct: 336 SLNTLKKLSQGKVFAIFQPHTFSRLKNLLNEFAESLS-LADKVIITDVYAAREKNNFGIT 394

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           SE+      EI           +        ++   K D++   G G
Sbjct: 395 SENLCLKLKEIGVDCEYISSFEDIA---CYVVKEAKKGDIIATIGAG 438


>gi|170755247|ref|YP_001783157.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B1 str. Okra]
 gi|226711900|sp|B1IGJ0|MURD_CLOBK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169120459|gb|ACA44295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum B1 str. Okra]
          Length = 458

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 116/364 (31%), Gaps = 55/364 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ +R G  ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKREGYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD             G    ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNNLLVLNKDDD----------LTNGMENEALGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+                 L+AA   +   +    +         V  R E
Sbjct: 260 SNNKLTIQGKEVCDSKDINLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       + +++   G D+     P+    A 
Sbjct: 320 FIREVNGVKYYNDSIASSPSRTLAGLNSFE-----KPVILIAGGYDKKIPFEPL----AE 370

Query: 408 DLADIA---IVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNK 458
              D     I+  D        KIR+     I         +   +  EA++ A +M  K
Sbjct: 371 GGYDKIKILILMGDTKN-----KIRSAFEKVISYKKCEMEIVIVNSMEEAVKVADDMAEK 425

Query: 459 QDVL 462
            D++
Sbjct: 426 GDII 429


>gi|332881748|ref|ZP_08449396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680387|gb|EGJ53336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 114/352 (32%), Gaps = 39/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I +++G +    G                          
Sbjct: 103 AKMICITGSNGKTTTTSLIYHIFKKAGYNVGLAGNIG-------------------QSLA 143

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +   +  +E SS  LD   +   +       N+  DH+D +      +       
Sbjct: 144 LQVAEKDYDYYVIELSSFQLD--NMYRFRANIAVLLNITPDHLDRYDHCMQNYVDAKMRI 201

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   +    + + DD   ++ +++      +      + + +          +  +   
Sbjct: 202 LQNQEETDAFVYWNDDPIIRKELEKYQIKAKKCPFSILKKEGMIGY---LADGQYVIEYP 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  +YN+L A       G+ + ++ + L     V  R E V     
Sbjct: 259 TPFNMEQESLALTGKHNMYNSLAAGITADIAGVKNEVIRQSLGDFEGVEHRLEKVVRVRG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-MGKIALDLA-DI 412
              I    A   ++    L++++T T           G +D+G     + ++       +
Sbjct: 319 VDYINDSKATNVDACWYALESMKTPT-------VLILGGKDKGNDYEAIAELVRKKCVGL 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN +  D          GIP   +  +  + +     M    D +++
Sbjct: 372 VFLGADNRKLHDFFDSF-----GIP-IADTHSMKDCVEACYRMARPGDTVLL 417


>gi|19553357|ref|NP_601359.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390996|ref|YP_226398.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324927|dbj|BAB99550.1| UDP-N-acetylmuramate-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326335|emb|CAF20497.1| PROBABLE UDP-N-ACETYLMURAMATE--ALANINE LIGASE PROTEIN
           [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 145/425 (34%), Gaps = 60/425 (14%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R+     P++   +    L               + + GT GK
Sbjct: 80  VVVTSFAAIPQDNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGK 130

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G+          ++    +    T          S  S        
Sbjct: 131 TSTTSMSVVAMQAAGMD-PSFAIGGQLNKAGTNAHHGTGEVFIAEADESDASLLRYK--- 186

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+D+ +T +AYF      F   +      ++
Sbjct: 187 -----------------PNVAVVTNVEPDHLDFFKTPEAYFQV-FDDFAGRITPNGKLVV 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK---------QQVTISVEG 297
             +D ++ E+ +R+   G + +  G         +V A+             + TI+++G
Sbjct: 229 CLNDPHAAELGERSVRKGIKTVGYGTADAVQAHPEVPAMATIVDSQVVAEGTRATINIDG 288

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++   +  +PG+  V N   A      +G D   ++E L     V  RFEF G    G  
Sbjct: 289 QEVSVILQIPGDHMVLNGAAALLAGYLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKF 348

Query: 358 I----YVDYAHTSNSLEMILKNIRTITS----GRIIVVFG-CGGDRDQGKRPIMGKIALD 408
                Y DYAH    +  +L   RT       GR+IV F      R    +      AL 
Sbjct: 349 NGAAIYDDYAHHPTEVTAVLSAARTRVKAAGKGRVIVAFQPHLYSRTIEFQKEFAG-ALS 407

Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD A+V +     E P      +I  + +  IP  + + N         E+    D+++
Sbjct: 408 LADAAVVLEIYGAREQPVDGVSSEIITDAMT-IP-VVYEPNFSAVPERIAEIAGPNDIVL 465

Query: 464 VAGKG 468
             G G
Sbjct: 466 TMGAG 470


>gi|294778000|ref|ZP_06743434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
 gi|294448058|gb|EFG16624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
          Length = 444

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 112/352 (31%), Gaps = 37/352 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I +++G++    G                         
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG-------------------QSL 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++     +  +E SS  LD   +           N+  DH+D +  Q   +      
Sbjct: 143 AYQVAECNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFR 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +    +   I + DD   +  + +    G        + +              +   
Sbjct: 201 IIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAYVEQDKVYFTEPIA 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               ++      L G   ++N++ A       GI    + E L     V  R E V    
Sbjct: 261 FNMEQE---ELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVR 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADI 412
               I    A   NS    L++++T    + I++    G +D+G     +  +  +    
Sbjct: 318 GVDYINDSKATNVNSCWYALQSMKT----KTILIL---GGKDKGNDYNEIADLVKEKCTG 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I       +E           G+P   +  +  +A+  A  M  K + +++
Sbjct: 371 LIY--MGLHNEKLHDFFD--KFGLP-VADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|114763032|ref|ZP_01442462.1| UDP-N-acetylmuramate--L-alanine ligase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544356|gb|EAU47364.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. HTCC2601]
          Length = 478

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 100/310 (32%), Gaps = 18/310 (5%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +    S         + VEA       +RL          TN+  +H+++  + +   + 
Sbjct: 159 IHAYGSNARVGLGEWMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGSIENLRD- 214

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    A+   D A  + ++ R  +          Q     +          
Sbjct: 215 GFYQFVSNIPFYGLAVCCTDHAEVQALVGRVSDRRVTTYGFNAQADVRAVNLRYEKGIAH 274

Query: 290 QVTISV--EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +    + K  +   P+PG+  V NAL A  +   +G+    +   L     V  RF 
Sbjct: 275 FDILLQGEDSKIEECTLPMPGDHNVSNALAAVAVARHLGMTREEIRAALAAFGGVNRRFT 334

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG    G  +  DY H    +  +LK  R  + GR+I V      R      +      
Sbjct: 335 RVG-EVNGVTVIDDYGHHPVEIAAVLKAARQASEGRVIAV--HQPHRYSRLHTLFDDFCA 391

Query: 408 DL--ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
               AD+  + D     EDP +       +   I HG        +  +  R   E    
Sbjct: 392 CFNEADVVAIGDVYGAGEDPIEGASRDDLVAGLIRHGHRHARAIHDEDDLERLVREQARP 451

Query: 459 QDVLVVAGKG 468
            D++V  G G
Sbjct: 452 GDMVVCLGAG 461


>gi|56752359|ref|YP_173060.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           6301]
 gi|81300550|ref|YP_400758.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           7942]
 gi|81561305|sp|Q5MZI0|MURC_SYNP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93141289|sp|P95836|MURC_SYNE7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56687318|dbj|BAD80540.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus elongatus PCC
           6301]
 gi|81169431|gb|ABB57771.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           7942]
          Length = 478

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 147/450 (32%), Gaps = 62/450 (13%)

Query: 58  LFIPQAIAQGAE-AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            F  +A++ G    ++ S+A     +++ A I    P+    +    L            
Sbjct: 67  EFFQEAVSAGQSPQVICSTAIHAHNEEYQAAIDLGCPVFHRSDLLAALLRV--------- 117

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++ +  +  +  ++GL    +     +++   + RL            
Sbjct: 118 YESIAVAGTHGKTTTSGLIAYLLYQAGLDPTVV-IGGEVNALGGNARLGQG--------- 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    H+  EA         L  ++   G  TN+  DH D++   +A  +      
Sbjct: 168 --------RHLVAEADESD---GSLVKLQAAIGIITNIELDHPDHYCDLEAVISTFKTFS 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +      +         +    ++              +G    + +V    +  Q  I 
Sbjct: 217 DNCSQLIAN--------WDCPTVRDRLPGTISYSLDPARGADYTVDQVSFRGSGTQARIW 268

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             G+       PL     + NAL A   C  +G+D A + E L        RFEF G ++
Sbjct: 269 ERGELLGRIHLPLLEAHNLSNALAAIAACRHLGMDFASIREGLAGFEGARRRFEFRG-SA 327

Query: 354 RGGRIYVDYAHTSNSLEMILKN--------IRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +G +   DYAH  + L   L             +      +V      R    +  + + 
Sbjct: 328 QGIQFVDDYAHHPSELAATLAAARLQIDSGCSRLPEVPKRLVAIFQPHRYSRTQAFLAEF 387

Query: 406 ALDL--ADIAIVTDD------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEML 456
           A     AD+ +++D       NP     + +   I           +  EA+     ++L
Sbjct: 388 AQSFGPADLVLISDIYAAGERNPGQLSGQTLADAIAQYQANVHYAPDL-EAVEQRLHQLL 446

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDC 486
              D+ +  G G+    ++       + D 
Sbjct: 447 QPGDLALFLGAGNLN-QVIPRLLDHYACDR 475


>gi|209524823|ref|ZP_03273369.1| cyanophycin synthetase [Arthrospira maxima CS-328]
 gi|209494702|gb|EDZ95011.1| cyanophycin synthetase [Arthrospira maxima CS-328]
          Length = 895

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 15/137 (10%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR      N       +DYAH   S E +   +     G  I V G  GDR      
Sbjct: 727 QTPGRMNL--FNMGSYHALIDYAHNPASYEALSGFVNN-WPGPRIGVVGGPGDRRDEDFV 783

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKI---RAEIIHGIP----GFIEKGNRIEA 448
            +GK++  + D  IV +D+     PR +    I     E++  +P          N  +A
Sbjct: 784 TLGKLSAKMFDRIIVKEDDDTRGRPRGDAAVLITQGIEEVLSPVPDPRVKHETILNETDA 843

Query: 449 IRTAIEMLNKQDVLVVA 465
           I  A++   K+ ++V+ 
Sbjct: 844 INLALDQAPKEALVVIL 860


>gi|258516086|ref|YP_003192308.1| Mur ligase middle domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779791|gb|ACV63685.1| Mur ligase middle domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 455

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 68/474 (14%), Positives = 156/474 (32%), Gaps = 48/474 (10%)

Query: 1   MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGH 57
           MK   L++++     ++I           E  I+  +     ++   ++  +  +  D +
Sbjct: 1   MKNLNLKEMLSIIEGKIIRGTD-------ELLIDHAAIVPHKLKDNSLYFNMQDDPVDFN 53

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            F      +    ++ S  Y++++          ++ V++  K    F           +
Sbjct: 54  SF------KNCAMVINSEHYNVENSKW------TVVAVEDVEKAFWRFVKYYRNLFNIPV 101

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT GK++    ++ I      ++      +          L        A      
Sbjct: 102 VAVTGTCGKTTTKEMIKHILSLHFKTAATYKSINGWRMHL-PYLLEIDETTEAAVFE--- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   +V      ++  R    K   G  TN+G DH+    T   Y NAK  + E L
Sbjct: 158 -------TAVAYPEDLIESCRYF--KPDIGIITNIGVDHLSGCSTFDNYLNAKAEMMEGL 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             + +  +    D  +   +      G  +     +       ++       Q ++  + 
Sbjct: 209 GYRGTLIL--NADDKNISRIDLQPYKGRIIYFGLSKKSHFRASEISLTDKGMQFSLEYKK 266

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             +D   P  G   +YNAL A      +G+        L     +    + V   +    
Sbjct: 267 LRYDIFVPGFGTHSIYNALAAIACTHVLGLGIKEAALRLASYKHLERHLQVVPGVNGSTI 326

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR----DQGKRPIMGKIALDLADIA 413
           I   ++    S++  LK ++ ++  +               ++     +G +A+++    
Sbjct: 327 IDDTWSSNPTSMQAALKTLQNLSGNKRKAAILGDMFYLYSWEKELHREIGNLAVEIGLDI 386

Query: 414 IVTDDNPRSEDPEKIRA-EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++T  +  SE    I    +  G+         +  EA +    +L+   +++V
Sbjct: 387 LLTVGDAASE----IARGALEKGMNSENIFICADADEAYQVICPLLDDNTIVLV 436


>gi|163855003|ref|YP_001629301.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella petrii DSM
           12804]
 gi|189028975|sp|A9I4V6|MURC_BORPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163258731|emb|CAP41030.1| UDP-N-acetylmuramate-L-alanine ligase [Bordetella petrii]
          Length = 468

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 139/427 (32%), Gaps = 58/427 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
            GA AIV S+A +  +    A   +  P++     R   L+           +  +AV G
Sbjct: 63  AGAGAIVTSTAVAGDNPEVIAARAAGIPVV----PRAIMLAELMRL------KRGIAVAG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S V  +    G           ++S   + RL     I +    S  S    
Sbjct: 113 THGKTTTTSLVASVLAA-GDLDPTFVIGGRLTSAGANARLGQGEYIVVEADESDASFLN- 170

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +  +    TN+  DH+D +    A   +    F + LP   
Sbjct: 171 -------------------LLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYG 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---- 298
            A++ ADDA  +E+M     +             +  + V A   + + T+  + +    
Sbjct: 212 SAVLCADDANVREIM--PFVSRPITTYGLSPDAHVRGENVQADGTRMRFTVQRQDRATAL 269

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355
                   LPG   V NAL A  +   +G+    + + L     V  RF   G       
Sbjct: 270 PPLAIELNLPGLHNVRNALAAVAVATELGVPDEAIAQALASFKGVGRRFTQTGEFPVPAA 329

Query: 356 -----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
                  +  DY H    +   L   R     R IV+        + +       ++   
Sbjct: 330 HGGGTFTLIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLG- 388

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            AD  ++T+     E P        +   +   G    +   +  +  +  ++ +   DV
Sbjct: 389 GADAVLLTEVYAAGEPPLVAADGRALARALRVAGRIEPVFVEDVADLPQAVLDFVRDGDV 448

Query: 462 LVVAGKG 468
           +VV G G
Sbjct: 449 VVVMGAG 455


>gi|323527429|ref|YP_004229582.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384431|gb|ADX56522.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
          Length = 467

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 82/430 (19%), Positives = 133/430 (30%), Gaps = 53/430 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPEN 116
           I  A     GA A+VVS+A    +       +  I +V   R   L+       G     
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I      S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH+D +    A        F 
Sbjct: 165 DASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP    A++  DD   KE++        R        +   +             +  
Sbjct: 205 HRLPFYGIAVLCVDDPNVKEILPFVSKPIIRYGFAPD-AQVRAVNVQARDGKMHFTAMRE 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR- 354
           +    D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G     
Sbjct: 264 DAAPLDITLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVI 323

Query: 355 -------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                     +  DY H    +   +   R    GR  +V      R    R        
Sbjct: 324 ADGQAAGTYTLVDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFVK 382

Query: 408 DLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNK 458
            L+  D  ++T+     E P        +   +           + ++ +  A+   +  
Sbjct: 383 VLSTVDALVLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAVVRD 442

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 443 GDVVITMGAG 452


>gi|148273039|ref|YP_001222600.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|189028983|sp|A5CS50|MURC_CLAM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147830969|emb|CAN01914.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 476

 Score = 63.4 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 8/180 (4%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T++ +G        +PG     NA  A  + + +G+D    +  L        RFE   
Sbjct: 263 FTLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGLGVDPDDAIAGLAGFSGTGRRFEL-H 321

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFG-CGGDRDQGKRPIMGKIALD 408
              RG  +Y DYAH    +   L+  RT+   GRII V       R +       ++  +
Sbjct: 322 AEVRGVSVYDDYAHHPTEVRAALEAARTVVGEGRIIAVHQPHLYSRTRMMAGDFARVYEE 381

Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  IV D     EDP       + +E            +  EA   A E+    D +V
Sbjct: 382 LADHTIVLDVFGAREDPIPGVTGALVSECFEDAGHVDYLPDWQEAADRAAEIARDGDFIV 441


>gi|168183596|ref|ZP_02618260.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
 gi|182673240|gb|EDT85201.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
          Length = 458

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 118/360 (32%), Gaps = 47/360 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD             G    ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNNLLVLNKDDD----------LTNGMENEALGDVLKFSLVEKVYNGAYL 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+      +          L+AA   +   +    +         V  R E
Sbjct: 260 SNNKLTMQGKEVCDSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       R +++   G D+    +P+    A 
Sbjct: 320 FIREVNGVKYYNDSIASSPSRTLAGLNSFE-----RPVILIAGGYDKKIPFKPL----AE 370

Query: 408 DLADIA---IVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              D     I+  D  N      EK+ +     I   +   +  EA++ A  M  K D++
Sbjct: 371 GGYDKIKILILMGDTKNKIKSAFEKVISHKKCEIE-IVIVNSMEEAVKVADNMAEKGDII 429


>gi|315225589|ref|ZP_07867398.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
 gi|314944406|gb|EFS96446.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
          Length = 444

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 108/349 (30%), Gaps = 38/349 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++       I + +GL     G      +                      
Sbjct: 105 VGITGSNGKTTTTLLTYHIFKEAGLQVGLGGNIGYSFAELV------------------- 145

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +++   +  +E SS  LD   ++          N+  DH+D +  +   +          
Sbjct: 146 ATENPPYYVLEISSFQLD--GIEHFAPHIAVLLNITPDHLDRYDYKFENYINSKFRIAMN 203

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +    I  ADD    + +                   +   LK        +  T  +
Sbjct: 204 QTENDYLIYDADDEVITQWLSTHTIKSKLIPFSIEKELPQGAFLKDNKIYIMLENQTTEI 263

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + ++            + N + A+     + I +  + E L+     P R E V      
Sbjct: 264 DVEEISLRGKH----NIKNTMAASVAARLVNIRNNSLRESLKGFKGAPHRLEEVKVVDGV 319

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +    A   NS+   L  I+T      IV    G D+      ++  +   +  I  +
Sbjct: 320 TYVNDSKATNVNSVFYALDTIKT-----PIVWIVGGQDKGNDYNSLLPYVHEKVRAIVCL 374

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             DN        I     + I   +E  +  EA++ A     + D +++
Sbjct: 375 GVDNT------PIIQSFYNTIGTLVETRSMDEAVKLAQGFAQEGDTVLL 417


>gi|315604422|ref|ZP_07879488.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315314128|gb|EFU62179.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 463

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 91/447 (20%), Positives = 152/447 (34%), Gaps = 54/447 (12%)

Query: 51  GNKED-GHL--FI-PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   D GH    + P+A+      +VVSSA    +    +      LV+  + + L+L A
Sbjct: 52  GVHVDVGHDASHVDPEAV------VVVSSAIREDNPELAVARRRGQLVIHRS-QALALAA 104

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           S +        +AV G  GK+S +  +    +  GL          +        L    
Sbjct: 105 SGM------RFVAVAGAHGKTSTSGMLAIALRACGLDPSVA-VGGVLPQLGTGAHLGGGE 157

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                   S  S            S  ++              TN+  DH+D + ++   
Sbjct: 158 VFVAEADESDGSFLNY--------SPAIE------------IVTNVEPDHLDRYHSR-EE 196

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-----LKK 281
           F      F   L      +  A+D  +  +   A + G RV++ G +          +  
Sbjct: 197 FEEIFVEFVRRLVPGGLLVACAEDPGAARLADTAKSLGARVVTYGREEHSQCEADVLICD 256

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           V         +++   +       +PGE  V NA  A    I  G++   + + L     
Sbjct: 257 VSVDAEGASASLAWGPRRARLRLAVPGEHHVLNAAAAWVAGIECGVEPQAMADGLGTYAG 316

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              RFE  G    G R++ DYAH    +E  ++  R + +G  + V        + +  I
Sbjct: 317 AARRFESRG-AVGGRRLFDDYAHHPTEVEAAIEQARVVAAGGEVTVVFQPHLYSRTR--I 373

Query: 402 MGK---IALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEML 456
             +    AL  AD  ++       EDPE       I   + G     +  EA R A  + 
Sbjct: 374 FAERFASALSRADHVVLAGIYGAREDPEPGVDSGMIASRVVGASYAEDMHEAARRAARLT 433

Query: 457 NKQDVLVVAGKGHET--VHIVTNGEKK 481
            +  V V  G G  T     V +  K+
Sbjct: 434 PRGGVCVTMGAGSITRCGQDVLDEWKR 460


>gi|328881789|emb|CCA55028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           venezuelae ATCC 10712]
          Length = 474

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 124/374 (33%), Gaps = 46/374 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +GL +  +G        A     T
Sbjct: 103 ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIGVSLLDAVLGEET 162

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                ++VE SS+ L       +++ + +  NL  DH+D+H + 
Sbjct: 163 ------------------YDVLAVELSSYQLHW--APSVRVHSAAVLNLAPDHLDWHGSM 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  A  +       + +     AD      V +     GCR +             V 
Sbjct: 203 EAY--AADKGRIYQGNQVACVYNVADKVTEDLVREADVEEGCRAIGFTLGTPGPSELGVV 260

Query: 284 AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                 +  +    K             P    + NAL AA L  A G+++  V + L+ 
Sbjct: 261 EDLLVDRAFVPDRQKSAQELAEVSDVQPPAPHNIANALAAAALARAFGVEAKAVRDGLKA 320

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R E V        +    A  +++ E  L           IV    G  +    
Sbjct: 321 FRPDPHRIELVEEVQGVTYVDDSKATNTHAAEASLAAYDP------IVWIAGGLAKGATF 374

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NR------IEAIRT 451
             ++ K A  L    ++        D   IR  +    P       +R       EA+R 
Sbjct: 375 DELVEKSAKRLRGAVLI------GADRALIREALARHAPEVPVVDLDRTDTGAMSEAVRE 428

Query: 452 AIEMLNKQDVLVVA 465
           A  +    D +++A
Sbjct: 429 AARLARAGDTVLLA 442


>gi|329901113|ref|ZP_08272729.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549212|gb|EGF33800.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 471

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 127/436 (29%), Gaps = 61/436 (13%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
               +I      GA+AIV S+A    +          I +V      L+           
Sbjct: 57  HAAAYID-----GADAIVTSTAVKEDNPEVVAGRERHIPIVPRAL-MLAELMRL------ 104

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           +  +A+ GT GK++  S V  +  + G   +F IG    ++S   + +L     I     
Sbjct: 105 KRGIAIAGTHGKTTTTSLVASVLAQGGLDPTFVIG--GRLTSAGANAKLGAGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH++ ++            
Sbjct: 163 ESDASFLN--------------------LSPVIEVITNIDADHMETYEHDFNKLKQAFVD 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++  DD + +E+M R             +     +         Q   I
Sbjct: 203 FTLRLPFYGIAVLCLDDVHVREIMPRIAK-PIMTYGFHEEADVRAIDARAVGGLMQFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                        PG   V NA  A  +   + +      + L + + V  RF   G  +
Sbjct: 262 QDGYPPLPISLNQPGMHNVQNACAAIAIARELSVADCDTQKALAEFNGVGRRFTRYGEIA 321

Query: 354 R---------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
                        +  DY H        L   R    GR  +V      R    R +   
Sbjct: 322 FAGRDGKPGGTFALVDDYGHHPVETAATLSAARGAYPGRR-LVLAFQPHRYTRTRDLFED 380

Query: 405 IALDLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGNRIEAIRTA 452
               L+  D  ++ +     E P        +   +               +  E I   
Sbjct: 381 FVKVLSSTDALVLAEVYAAGEQPIVAADGRALAHALRVAGKVEPVFVEVIADMPETI--- 437

Query: 453 IEMLNKQDVLVVAGKG 468
           + ML   DV++  G G
Sbjct: 438 MNMLRDGDVVITMGAG 453


>gi|70732386|ref|YP_262142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf-5]
 gi|81174950|sp|Q4K6J1|MURD_PSEF5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68346685|gb|AAY94291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf-5]
          Length = 448

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 120/356 (33%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I+A++G++ KS+V + V ++   +G      G   T               +
Sbjct: 103 FARNAKAPIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +    AY  
Sbjct: 150 DLLSDDVEL-------YVMELSSFQLET--TDQLGAEVATVLNISEDHMDRYSGLPAYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          +    DA ++ ++      G    + G          +     +
Sbjct: 201 AKHRIFRGARQ----VVFNRQDALTRPLIGE----GLPCWTFGLSKPDFKAFGLREEDGE 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L     +  R ++
Sbjct: 253 KYLAFEFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLAALRTFAGLEHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+I+++ G  G +    + + G +A +
Sbjct: 313 VRDLDGVAYYNDSKATNVGAALAAIEGLGADIEGKIVLIAGGDG-KGADFKDLRGPVAAN 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                I+        D ++I   I   +P  I  G+  EA+          DV+++
Sbjct: 372 -CRAVIL-----MGRDSDQIGEAIGDAVP-LIRVGSLQEAVEQCRATAQPGDVVLL 420


>gi|167586022|ref|ZP_02378410.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ubonensis Bu]
          Length = 465

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 127/430 (29%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  +    G           + S   + RL T   I      
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAA-GDLDPTFVIGGRLISAGANARLGTGDFIVAEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH+D +    A        F
Sbjct: 164 SDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + LP    A++  DD   ++++        R                          I 
Sbjct: 204 TQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVIR 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS- 353
              +    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G    
Sbjct: 263 EGREPLPVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPA 322

Query: 354 ---RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  +  DY H    +   +   R    GR  +V      R    R         L+
Sbjct: 323 AGGGSYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVLS 381

Query: 411 --DIAIVTDDNPRSE------DPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNK 458
             D  ++T+     E      + + +   +               +  +A+         
Sbjct: 382 TVDALVLTEVYAAGEAAITTANGDALSRALRAAGKVEPVFVAAIDDVPDALTKV---AQN 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|146276742|ref|YP_001166901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166224764|sp|A4WQD2|MURD_RHOS5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145554983|gb|ABP69596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 465

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 120/396 (30%), Gaps = 44/396 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
                  +  + +  P+   ++   F   FA+R +    +   ++ VTG++GKS+  + +
Sbjct: 81  PAPNPVIARAMAAGVPV--DNDIGLFFRSFATRDWDAFDQMPRVVCVTGSNGKSTTTALI 138

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I   SG  +   G            R      + L                   SS+ 
Sbjct: 139 HHILAESGRPTQMAGNIGRGVLDLDPARDGEVVVLEL-------------------SSYQ 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD--- 250
            D  R   +      FTNL  DH+D H     YF AK RLF E  P  +   +   +   
Sbjct: 180 TDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEPEGLY 237

Query: 251 -AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            A    V                +     +        + +    +   D   +  LPG 
Sbjct: 238 LAGQLSVAPEDDRVIRISAGQKLERFGWAVFARKGFLAEWRKGRQMASIDLRAMPGLPGA 297

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NA  A   C  +G+    + E L     +P R + VG  +    +    A   +S 
Sbjct: 298 HNHQNACAAYAACRTLGLAPRQIEEALGSFKGLPHRSQLVGERNGVRFVNDSKATNVDSA 357

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L+    I   R I             RP +  +       A +   + R        
Sbjct: 358 AKALQAFPKI---RWIAGGLGKDGGIAALRPHLDAVV-----KAYLIGHSARD------- 402

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             +  G            A+  A E     +V+++A
Sbjct: 403 FALQMGATDHEICETMDRAVVRAAEEAQPGEVVLLA 438


>gi|126663232|ref|ZP_01734230.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624890|gb|EAZ95580.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteria bacterium BAL38]
          Length = 444

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 56/392 (14%), Positives = 118/392 (30%), Gaps = 49/392 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                     +  + P++         S     +        + +TG++GK++       
Sbjct: 72  PEKAPIVKKLLEKDIPVI---------SEIEFAIQFTQ-AKTVGITGSNGKTTTTLLTYH 121

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + + +GL+    G                            ++        +E SS  LD
Sbjct: 122 VLKEAGLNVGLAGNIGKS-------------------FAWQVAENKHDIYVLELSSFQLD 162

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +   K      TN+  DH+D +    + +        +   +    I   +D   K 
Sbjct: 163 --GVFNYKPNIAIITNISPDHLDRYNYDYSLYINSKFRITKNQTEADYLIYDNEDEAIKN 220

Query: 256 VMKRAHNAGCRVLS---VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            +K       +V        + +   L +          T ++   +            +
Sbjct: 221 WLKNNTIKANKVPFSLTTKPEAEGGFLDENNMNSTINNDTFTMPINELALEGKH----NI 276

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA+ A  +   + I    + E L        R E V        I    A   NS+   
Sbjct: 277 KNAMAATAVAQLLNIRKQTIRESLTNFQGAEHRLEKVLKIQGVQYINDSKATNVNSV--- 333

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              + ++T+  + +V G   D+      +M  +   +  I  +  DN       KI    
Sbjct: 334 FYALDSMTTPTVWIVGGV--DKGNDYDELMPLVREKVKAIVCLGVDNT------KISNTF 385

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + +   +E  +  EA++ A  +  K D +++
Sbjct: 386 NNVVDIMVETTSMAEAVQIAQRLAEKGDSVLL 417


>gi|254880788|ref|ZP_05253498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|319639798|ref|ZP_07994528.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
 gi|254833581|gb|EET13890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|317388615|gb|EFV69464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
          Length = 444

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 112/352 (31%), Gaps = 37/352 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I +++G++    G                         
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG-------------------QSL 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++     +  +E SS  LD   +           N+  DH+D +  Q   +      
Sbjct: 143 AYQVAECNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFR 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +    +   I + DD   +  + +    G        + +              +   
Sbjct: 201 IIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAYVEQDKVYFTEPIA 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               ++      L G   ++N++ A       GI    + E L     V  R E V    
Sbjct: 261 FNMEQE---ELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVR 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADI 412
               I    A   NS    L++++T    + I++    G +D+G     +  +  +    
Sbjct: 318 GVDYINDSKATNVNSCWYALQSMKT----KTILIL---GGKDKGNDYNEIADLVKEKCTG 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I       +E           G+P   +  +  +A+  A  M  K + +++
Sbjct: 371 LIY--MGLHNEKLHDFFD--KFGLP-VADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|150003965|ref|YP_001298709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|149932389|gb|ABR39087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
          Length = 444

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 112/352 (31%), Gaps = 37/352 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I +++G++    G                         
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG-------------------QSL 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++     +  +E SS  LD   +           N+  DH+D +  Q   +      
Sbjct: 143 AYQVAECNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFR 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +    +   I + DD   +  + +    G        + +              +   
Sbjct: 201 IIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAYVEQDKVYFTEPIA 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               ++      L G   ++N++ A       GI    + E L     V  R E V    
Sbjct: 261 FNMEQE---ELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVR 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADI 412
               I    A   NS    L++++T    + I++    G +D+G     +  +  +    
Sbjct: 318 GVDYINDSKATNVNSCWYALQSMKT----KTILIL---GGKDKGNDYNEIADLVKEKCTG 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I       +E           G+P   +  +  +A+  A  M  K + +++
Sbjct: 371 LIY--MGLHNEKLHDFFD--KFGLP-VADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|312863272|ref|ZP_07723510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
 gi|311100808|gb|EFQ59013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
          Length = 450

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 137/416 (32%), Gaps = 55/416 (13%)

Query: 61  PQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASR 108
            QA+  +G + +       L D +  +    P +  DN     +             A  
Sbjct: 49  AQALLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNPMVARALEKEIPVWTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + +  +    G S    G     +S      +T    +
Sbjct: 109 VSEAP---IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEVA-QSVTNQDTL 164

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L    ++         TNL   HIDYH + + Y  
Sbjct: 165 -----------------VMELSSFQL--MGIESFHPHIAVITNLMPTHIDYHGSFEGYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +  ++   +   + +  D     + K         +      + +    +      
Sbjct: 206 AKWNIQNKMTSDDFVILNFNQD-----LAKELATQTNAQVVPFSTVEKVDGAYLENGGLY 260

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  + +   +      +PG   V NAL    +     + +  + E L     V  R +F
Sbjct: 261 FKGELVMHADEL----GVPGSHNVENALATIAVAKLSSVSNQAIKETLSSFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T           +     +    K +    + ++I++   G DR      ++  I   
Sbjct: 317 VDTIDNVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFDELIPDITG- 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L  + I+ +  PR       RA    G+   ++  +  +A R A E  +  DV+++
Sbjct: 372 LKKMVILGESAPR-----VKRAADKAGVTH-LDAKDVADATRIAFEQASAGDVVLL 421


>gi|282882832|ref|ZP_06291437.1| tetrahydrofolate synthase [Peptoniphilus lacrimalis 315-B]
 gi|281297243|gb|EFA89734.1| tetrahydrofolate synthase [Peptoniphilus lacrimalis 315-B]
          Length = 422

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 8/218 (3%)

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +EV K          S  Y+  F  +  +    N  + +          L      +
Sbjct: 195 PQKEEVYKELKEIADENKSEIYKFDFSEINIINEDINGNEFSFREYKNIKTSLIGRHQAY 254

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
               AL          +     +         P R E +        I +D +H   S+ 
Sbjct: 255 NASLALSILSYLKNFFVLDDEKIRQGIYKTTNPARLEIISDEPL---ILMDGSHNEESIN 311

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIR 429
            ++ N+      ++I+ F    D+++ K   + K     AD  ++TD D+ R  D   + 
Sbjct: 312 SLISNLDKFNYEKLILGFSILRDKEREK---IIKNLAKYADTVVLTDIDSDRKSDINDLY 368

Query: 430 AEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAG 466
                     I    +  +A+   +E+ +K+D+++  G
Sbjct: 369 NIFKSYTDKKIYMETDIEKAVNKTLELASKKDLILWCG 406


>gi|169343255|ref|ZP_02864266.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
 gi|169298553|gb|EDS80634.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
          Length = 457

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 72  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 127 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 169 EYKQSFLR---FFPYVGIILNIDADHLDFYKNINHIKDTFKQFVRLIPNDGYIIG--NAD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 224 DEKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 284 NVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   RI+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 343 ATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 401

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 402 NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 446


>gi|254469048|ref|ZP_05082454.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
 gi|207087858|gb|EDZ65141.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
          Length = 461

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 140/413 (33%), Gaps = 40/413 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           Q A+ +V S+A    +       N  I ++    + LS       G      +A+ GT G
Sbjct: 63  QKADVVVTSTAIPKNNPEIVAAKNQNIPIIPRA-EMLSELMRFKEG------IAIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S  S +  I   +G                    +       L ++     S+ +   
Sbjct: 116 KTSTTSILATIMNDAG---------------LDPTYVIGGRINSLRQSARLGKSKHMIVE 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+ +  L  +            TN+  DH++ +   +         F   +P  +   
Sbjct: 161 ADESDASFLHLN------PSNVLVTNIDYDHMETYGHDEERLKQTFVDFIHQIPFYNEVF 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLF 304
           +  DD   K + K                 +     +    +  +  +IS + + F    
Sbjct: 215 LCIDDKNIKSIQKLIARPIITYGFSKKADYYPDRVVIKKNKSSFRVNSISKKIRSFSVEI 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF---EFVGTNSRGGRIYVD 361
            +PG   + N L A  + +++ I   ++ + L+K   V  RF   E      +   +  D
Sbjct: 275 DMPGRHYILNTLGAIAIALSLNIKPQIISKALKKFKGVSRRFDLYEEFKLGEKNIHLIDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDN 419
           Y H    ++ +L +I+    G+ I +        + K       +I   +AD   + +  
Sbjct: 335 YGHHPTEIKAVLDSIKKGFPGKKINLVFQPHRYSRTKDLFEQFVQILA-MADRLFLFEIY 393

Query: 420 PRSEDPEKIRA--EIIHGIPGFIEK-GNRIEAIRTAIEMLNKQD-VLVVAGKG 468
              E   K     E+I  I        +  +A R  IE   K D +L+V G G
Sbjct: 394 AAGEQAIKGINSHELIKNIKKEKYILDDMAKA-RLLIEDKIKDDEILLVMGAG 445


>gi|172040884|ref|YP_001800598.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium urealyticum
           DSM 7109]
 gi|229486485|sp|B1VHC3|MURC_CORU7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171852188|emb|CAQ05164.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium urealyticum
           DSM 7109]
          Length = 487

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 92/468 (19%), Positives = 150/468 (32%), Gaps = 78/468 (16%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQGA---EAIVVSSAYSLQDFS---ATI 86
           DSR +      +A+   G +   GH      +  GA     +V S A   +D     A  
Sbjct: 44  DSRSV------LALRAAGAEVAIGHDAAN--VTGGAELPTVVVTSFAAIPKDNPELTAAR 95

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +  PI+   +    L+   S            + GT GK+S  S      Q +GL    
Sbjct: 96  EAGIPIVRRSDV---LAELMS------DRRAFLLAGTHGKTSTTSMAVVGVQAAGLD-PS 145

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 ++    +    T          S  S    +                       
Sbjct: 146 FAIGGQLNRAGTNAHHGTGEIFIAEADESDGSFLSYS--------------------PEV 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+DY+ T++AY  A    F   +      +   DD  +  +  R   AG  
Sbjct: 186 AVITNIEPDHLDYYGTEEAYV-AIFDEFATKVTPGGYLVCCLDDPGAAALAARVRAAGTA 244

Query: 267 VLSVGYQGK---------------FIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
              +GY  +                  +        K +  +  + + + D    +PG  
Sbjct: 245 PTVLGYGSRAAADQHPDIPAAAIIEEMIPDARGTAAKVRFNLPGQEERYEDIRVAIPGAH 304

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N + A      +G D   V+  +     V  RFE+ G  + G R+Y DYAH    + 
Sbjct: 305 MTLNGVAAITGGALLGADLEKVIAGVADFDGVRRRFEYHG-EAGGVRVYDDYAHHPTEVT 363

Query: 371 MILKNIRTITS----GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +L   + +      GRII VF      R         + AL LAD  ++ D     E P
Sbjct: 364 AVLTAAKELVEATDAGRIIAVFQPHLYSRTMNFASEFAR-ALSLADEVVLLDIFGAREQP 422

Query: 426 EK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     I  E +     +  + +        I +    DV++  G G
Sbjct: 423 VEGVDSRIIGEKLTC--EWHFQPDFSAVAEQVIGIAKPGDVVLTIGAG 468


>gi|86749119|ref|YP_485615.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
 gi|109892730|sp|Q2IYK6|MURC_RHOP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86572147|gb|ABD06704.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           HaA2]
          Length = 468

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 139/421 (33%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  AGADVLVVSTAIKRDNPELLAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDA-GDFDPTVINGGIINAYGTNARLGAGDWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A  +A  R F E +P    
Sbjct: 168 -------------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEG 297
           A++  D    + ++ +  +          Q     L+              +        
Sbjct: 214 AVMCIDHPVVQALVGKIEDRRIITYGENPQADARLLELKPSGSGSTFKVAFRDRKAGTAH 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  + + P+PG     NA  A  +   +G+    + + L     V  RF   G +  G  
Sbjct: 274 EIAELMLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG-DWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DY H    +  +LK  R  T GR+I V      R    + +  +       AD  IV
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQSTDGRVIAVV--QPHRFTRLQSLFEEFCTCFNDADSVIV 390

Query: 416 TDDNPRSEDP-EKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D  P  E P + I  +        HG    I   +          +    D +V  G G
Sbjct: 391 ADVYPAGEAPIQGIDRDHFVLGLRAHGHRNVIPLQDSASLAGVVAGVAKSGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|83949551|ref|ZP_00958284.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens
           ISM]
 gi|83837450|gb|EAP76746.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius nubinhibens
           ISM]
          Length = 470

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 142/415 (34%), Gaps = 45/415 (10%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE +V+SSA      +  A      P++        L            ++ +AV GT 
Sbjct: 70  GAEVVVISSAIKPGNPELDAARARGLPVVRRAEMLAELMRL---------KSNVAVAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G     +     I ++  + R+                      
Sbjct: 121 GKTTTTTMVAALL-DHGKFDPTVINGGIIHAYGSNARVGAGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++  T++         F   +P    A
Sbjct: 163 MVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGTEENLHR-GFYEFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   DDA  + ++ +  +          Q    G  +  +   A  +        +    
Sbjct: 219 VCCTDDADVQTLVGKVTDRRVVTYGFNAQADVRGMNLRYEAGQAHFDIALRGEGDDKVIK 278

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D + P+PG+  V NAL A  +   +G+ SA + E L     V  RF  VG    G  I  
Sbjct: 279 DCVLPMPGDHNVSNALSAVAVARHLGMRSAEIREALANFGGVNRRFTRVG-EVDGVVIID 337

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    +  +LK  R  T GR+I V                    + AD+  ++D   
Sbjct: 338 DYGHHPTEIAAVLKAARQATEGRVIAVHQPHRYSRLSHHFEEFCACFNEADVVGISDVYA 397

Query: 421 RSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             EDP       + +   I HG        +  +  R   E     D++V  G G
Sbjct: 398 AGEDPIPGASRDDLVAGLIRHGHRHARALLDEGDLTRLVREQAGPGDMVVCLGAG 452


>gi|325269661|ref|ZP_08136274.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
 gi|324988029|gb|EGC19999.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
          Length = 498

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 113/361 (31%), Gaps = 38/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 149 EFAGRYTD---SKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN----------- 194

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 195 ---SLALQV-----AEDPHAYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDFK 244

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   I + DD     + K         +   +     +     
Sbjct: 245 FENYADAKMRIIQNQTKDDSFIYWNDDPV---IKKELEKFDVHAVCYPFSELKENGSIGY 301

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++              L G   +YN+L A       GI    + + L     V 
Sbjct: 302 IEEGQYKIEKPEPFNMEQEDLSLTGRHNIYNSLAAGIASGISGIRKENIRKSLSDFPGVE 361

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +    I    A   ++    L+++RT       ++   G D+     PI  
Sbjct: 362 HRLEKVCKVAGVQYINDSKATNVDACWYALESMRT-----PTILILGGKDKGNDYDPIKE 416

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    A +  +  DN +  D          GIP   +  +  + +     M    D ++
Sbjct: 417 LVREKCAGLVYLGADNKKLHDNFDSL-----GIP-VCDTHSMKDCVAACASMAKPGDTVL 470

Query: 464 V 464
           +
Sbjct: 471 L 471


>gi|329849874|ref|ZP_08264720.1| UDP-N-acetylmuramate--alanine ligase [Asticcacaulis biprosthecum
           C19]
 gi|328841785|gb|EGF91355.1| UDP-N-acetylmuramate--alanine ligase [Asticcacaulis biprosthecum
           C19]
          Length = 475

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 92/281 (32%), Gaps = 18/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+  +H+D+    +A        F E +P    A +  D    + +  +  
Sbjct: 181 LKSTLAIVTNIDAEHLDHWGDFEAVKK-GFVDFVENIPFYGFAAVCIDHPEVQALAAKVE 239

Query: 262 NAGCRVLSVGYQGKFIHLK-----KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           N       V  Q +   L      +      +   T            P+ G   V NA 
Sbjct: 240 NRRLIPYGVSPQAEVRCLNISFGPEGALFDVQFSPTGVEPFTWEKIRLPMTGNHNVSNAT 299

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+    V   L     V  RF   G    G RI  DY H    +  +L   
Sbjct: 300 AAIAIARELGVTEDAVRTGLAGFGGVKRRFTTTGV-VDGIRIIDDYGHHPVEIAAVLTAA 358

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA--EI 432
           R ++ G++I V      R    R +M + +     AD  IV D     E P    +   +
Sbjct: 359 RQVSQGKVIAVV--QPHRYTRLRDLMTEFSSCFHDADAVIVADVYSAGETPIDGVSKTAL 416

Query: 433 IHGIPGF----IEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
           + G+  F        +   A+           D++V  G G
Sbjct: 417 VEGLHRFGHRNAVALDGPAALAGLVAAEARPGDLVVCLGAG 457


>gi|148642419|ref|YP_001272932.1| peptide ligase [Methanobrevibacter smithii ATCC 35061]
 gi|148551436|gb|ABQ86564.1| cell wall biosynthesis protein, MurD-like peptide ligase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 478

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/412 (12%), Positives = 126/412 (30%), Gaps = 26/412 (6%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKS 127
           A +++              N P++VVD      +        K       + +TGT+GKS
Sbjct: 61  ACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +  +  I + +G+       + +  +   D  ++      +       ++  + ++ +
Sbjct: 121 TTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEV------KNNGKLDYLVI 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E S        L   K  A    +  +  +             +   +E+  + +     
Sbjct: 175 EVSEVQGWLGNLM--KHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNA 232

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  +                           K   ++    +    +    +   P  
Sbjct: 233 IGDGVTVLNYDDDLVMKLTPKHPFLCSMNNMDSKNPNVYYDNGIFYEGKRILENKDLPFT 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + N L A   CI++ +D   ++E ++    +  RF  +        I  D+AH  +
Sbjct: 293 SHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLH---ENPLIVDDFAHNPD 349

Query: 368 SLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDNPR- 421
            ++  +   R + +      VV    G R      +  +   +  D     +++  N   
Sbjct: 350 GIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNIKLVLSSSNDVV 409

Query: 422 -------SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   E+ E     +      +    N  + ++   +  +  D++++ G
Sbjct: 410 DHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILLIG 461


>gi|18146159|dbj|BAB82199.1| UDP-N-acetylmuramate-alanine ligase [Clostridium perfringens str.
           13]
          Length = 435

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 50  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 104

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 105 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 146

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 147 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIG--NAD 201

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 202 DEKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 261

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 262 NVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 320

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   RI+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 321 ATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 379

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 380 NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 424


>gi|254391589|ref|ZP_05006788.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Streptomyces clavuligerus ATCC 27064]
 gi|197705275|gb|EDY51087.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Streptomyces clavuligerus ATCC 27064]
          Length = 173

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
             EL  +L +      E  +  ++ DSR ++ G ++ A+ G +  G  F
Sbjct: 62  LGELAARLGVSDPAADEVTVTGITHDSRAVRPGDVYAALPGARLHGADF 110


>gi|160902901|ref|YP_001568482.1| FolC bifunctional protein [Petrotoga mobilis SJ95]
 gi|160360545|gb|ABX32159.1| FolC bifunctional protein [Petrotoga mobilis SJ95]
          Length = 438

 Score = 63.4 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 129/414 (31%), Gaps = 52/414 (12%)

Query: 93  LVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
             V    + +   + R+   ++    + +TGT+GK SV + + +I + +G+         
Sbjct: 18  FKVKLGLERIDELSKRIGSPQNTFKSIHITGTNGKGSVTTAISRILRFNGMKVGTYISPH 77

Query: 152 TISSFAQDNRLT-------------------------------TPSPIYLAKALSYLSSQ 180
            +S   +                                    +   I  A A  Y   Q
Sbjct: 78  LVSITERIKVNGENISEKEFVEIYNEIEEEIKTMDLKGEEYAPSFFEITTAMAFKYFEKQ 137

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V     E    G    RLD   +I    + +     D+ +T      A       ++ K
Sbjct: 138 KVDVGVFEVGLGG----RLDATNIINSDVSVITSISKDHIKTLGDTLEAIAYEKAGIIKK 193

Query: 241 ESPAIIYADD--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            +  I+   D       + K       ++   G     I+ +     +      ++ E K
Sbjct: 194 NNFLILGNIDESPKKVILNKAKEVNAEKIYEHGKDFYSINHRYFINNNMLDYHGLNYEIK 253

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGI----DSALVLEHLEKLHVVPGRFEFVGTNSR 354
           D  F      + +     +AA                V E +   +   GRFE+      
Sbjct: 254 DLIFGANGTFQIENVTTSLAATEAFMQKFGKTLSIEKVREAMANFYW-EGRFEYT--EIN 310

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G ++  D AH   + + + K++     + + I + G   D+D  K   M +I   + D  
Sbjct: 311 GKKMVFDGAHNLAAAQQLEKSVNLYFPTQKKIALIGILDDKDYEK---MSQIFASVFDKI 367

Query: 414 IVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           IVT   + R   PE I  E            +  E     +    K D+  V G
Sbjct: 368 IVTSVPSERGRHPELIYEEFKKHTKNVEFIKDPSEGFNKLLS--EKSDIYFVTG 419


>gi|51246730|ref|YP_066614.1| folylpolyglutamate synthase [Desulfotalea psychrophila LSv54]
 gi|50877767|emb|CAG37607.1| related to folylpolyglutamate synthase [Desulfotalea psychrophila
           LSv54]
          Length = 441

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 21/135 (15%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E++  +       +D AH    +  +++ +   +  R+I V+G   D+D      
Sbjct: 301 WPGRLEYLQLDRSPAPYLLDGAHNPAGIASLVEALALYSYRRLICVWGAMADKDIA--TG 358

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE---------AIRT 451
           + +I     D+  +T  D+ R+ +P  + A         + + +R +         A+  
Sbjct: 359 LNRIV-PHVDLLCLTAVDSERAAEPAAMFA--------LLTEDDRKKTTCFTSSSLALEY 409

Query: 452 AIEMLNKQDVLVVAG 466
           A  M  K D++++AG
Sbjct: 410 AERMAGKDDLILIAG 424


>gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
 gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
          Length = 445

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 143/418 (34%), Gaps = 50/418 (11%)

Query: 51  GNKEDGHLF----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G   DG +F    +  A++ G + + +S   S +             V+ +         
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQNGGRVLGDI-----ELL 101

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +  +  + ++A+TG++GK++V S V  +C + GL +   G   T    A+  R     
Sbjct: 102 ADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTPVLEAEWQREG--- 158

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                        +      +E SS  L+    + ++  A +  N+  DH+D +     Y
Sbjct: 159 -------------KKADVWVLELSSFQLE--NTESLRPTAATVLNISEDHLDRYDDLLDY 203

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + K ++F     +   A     D      MKRA               +          
Sbjct: 204 AHTKDKIFRGDGVQVLNA-----DDVFCRAMKRAGREVKWFSLEHEADFW-------LER 251

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              ++    E        PL G     N + A  LC A+G+    +LEH++    +P R 
Sbjct: 252 ETGRLKQGDEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRV 311

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +G  +    I         +    +  ++       + V   G  + Q   P+   + 
Sbjct: 312 EKIGEKNGVVFIDDSKGTNVGATVAAIAGLQN-----PLFVILGGMGKGQDFTPLRDALK 366

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    +        D  +IR ++        +     EA++TA       D++++
Sbjct: 367 DK-AKGVFLI-----GVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|146295957|ref|YP_001179728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166224756|sp|A4XI02|MURD_CALS8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145409533|gb|ABP66537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 453

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 127/362 (35%), Gaps = 37/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R      +NI+A+TGT+GK++  + V +I ++   +    G       F      +
Sbjct: 101 ELAYRFCR--SKNIVAITGTNGKTTTTTLVGEILKKVFDNVIVCGNIGFP--FIDYVESS 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T   I                  +E SS  L+   +   K + G   N+  DH++ H   
Sbjct: 157 TDDTI----------------FVIEISSFQLET--IKYFKPMVGCILNITPDHLNRHMNM 198

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y  AKMR+FE +  +    +   +      +       G  +     +    +   V 
Sbjct: 199 DNYIRAKMRIFENIDQEGYSVLNMDNSITRDLI---GCAKGTVITFSKNESDTQNSVFVD 255

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                +     VE         +PGE  + N L A G  +   I  +++ + L++   V 
Sbjct: 256 GDFIYRNFLGKVEKVMRKDDIFMPGEHNLENTLAAIGCVLPFEIQPSIIEKTLKEFKGVE 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFV   +            +++    L +         I++   G D+ +       
Sbjct: 316 HRIEFVREINGVRFYNDSKGTNTDASSKALNSFEV-----PIILIAGGYDKGESF-EKFA 369

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           K+         +       +  +KI  ++   G   F    +  EA++ + E+  + DV+
Sbjct: 370 KLISQKVKKVFL-----LGQTKQKIADQLQKIGYLNFEFVEDLKEAVKKSFEIAKEGDVV 424

Query: 463 VV 464
           ++
Sbjct: 425 LL 426


>gi|320527324|ref|ZP_08028509.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
 gi|320132348|gb|EFW24893.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
          Length = 459

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 120/377 (31%), Gaps = 38/377 (10%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L            ++ +AV+GT GK++  S +  I   +          S     A  
Sbjct: 104 ELLGELMENY-----KHSIAVSGTHGKTTTTSMLSYILMAANTDP----TISLGGMLAH- 153

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                     +   +     Q     + E ++  L+   L GI        N+  DH+D+
Sbjct: 154 ----------IGGNIRVGRGQTFLTEACEYTNSFLELKPLVGI------ILNVEADHLDF 197

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            +       +  R    +    +  I ++       +       G  +            
Sbjct: 198 FKDLDDIRLSFRRFASGIKEGGTLVINHSIQDKEYII---GDFKGTVITFGEDGDMHARN 254

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               A+ N        + K  D    +PG+  V NAL A     +IGID A + + L   
Sbjct: 255 IAYDALGNPGFEVYYKDEKLGDVQLLVPGKHNVDNALAAIATAYSIGIDFAAIKQGLVSY 314

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGK 398
             V  RF++ G    G  +  DYAH    +E  L   +     ++ VVF      R    
Sbjct: 315 SGVDRRFQYKG-KCNGATVIDDYAHHPQEIEATLNAAKHYPHKKLYVVFQPHTYSRTIAL 373

Query: 399 RPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
            P   K AL+ AD+ I+       E        E I   +              E +   
Sbjct: 374 LPEFAK-ALENADVVILAKIYAAREVNTTGVSAEDISKLMNQSKVTSFYLPTFEEIVDYL 432

Query: 453 IEMLNKQDVLVVAGKGH 469
              L + D+ +  G G+
Sbjct: 433 RSHLEEGDLCITMGAGN 449


>gi|303228388|ref|ZP_07315221.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516890|gb|EFL58799.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 460

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 84/434 (19%), Positives = 144/434 (33%), Gaps = 57/434 (13%)

Query: 51  GNKED-GH--LFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++     QG +A+V S+A      +  A       IL   +  K +   
Sbjct: 50  GATVHIGHNADYV-----QGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     N +AV G  GK+S  S + QI    G     +     +      + L   
Sbjct: 105 ---------TNGIAVAGAHGKTSTTSMIGQILVE-GQMEPTVIIGGEVDYLKGSSCLGKG 154

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               +    S  S                       ++      TN+  DH+D+++T + 
Sbjct: 155 EYSVVEADESDGSFLK--------------------LRPKTIVITNIEDDHMDHYKTMEN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP +  A++  D+   + VM +                    K +   
Sbjct: 195 LLNA-FCQFVETLPVDGKAVVCGDNDNIRYVMSKVERQFITYGL--EDSNDYVAKNIHYE 251

Query: 286 HNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVP 343
            +     +  +G+        +PG   V N+L +  +           +++ L K     
Sbjct: 252 DSSLVYDVVHKGETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPSIVKALGKFIGAK 311

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RFE  G    G  +  DYAH    ++  LK  + +   R+I VF               
Sbjct: 312 RRFETKGH-VAGVWVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRYSRTSLLKDEF 370

Query: 404 KIALDLADIAIVTDDNPRSEDPEK---------IRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             A   AD   +TD     EDP           I +E+ H    ++E  N + A+    +
Sbjct: 371 ATAFTSADEIYMTDIYSSGEDPISGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLA--K 428

Query: 455 MLNKQDVLVVAGKG 468
           ++   D+++  G G
Sbjct: 429 VVRPNDLVITMGAG 442


>gi|229588488|ref|YP_002870607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens SBW25]
 gi|229360354|emb|CAY47211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens SBW25]
          Length = 448

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 118/356 (33%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I+A++G++ KS+V + V ++   +G      G   T +             I
Sbjct: 103 FARHAKAPIVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPALDLLS------DDI 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                +E SS  L+      +     +  N+  DH+D +    AY  
Sbjct: 157 EL--------------YVMELSSFQLET--THDLGAEVATVLNVSEDHMDRYSGLPAYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA S+ +M      G    + G          +   H +
Sbjct: 201 AKHRIFRGAKQ----VVVNRQDALSRPLMGE----GLPCWTFGLSKPDFKAFGIREEHGE 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L     +  R ++
Sbjct: 253 KYLAFEFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRTFGGLEHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+++++ G  G +    + + G +A  
Sbjct: 313 VRDLDGVSYYNDSKATNVGAALAAIEGLGADIEGKLVLIAGGDG-KGADFKDLKGPVAT- 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D + I A +   +P      +  +AI     +    D +++
Sbjct: 371 HCRAVVLI-----GRDSDLIAAALGDAVPQV-RATSLDDAIAHCKALAQPGDAVLL 420


>gi|323127721|gb|ADX25018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 452

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 131/427 (30%), Gaps = 59/427 (13%)

Query: 54  EDGHLF----IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F      QA+  +G + +  S    L D         P +  DN    + L    
Sbjct: 38  NDGKPFEENPAAQALLEEGIKVVCGSHPLELLDEDFEYMVKNPGIPYDNPMVTRALEKQI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + +  +    G S+   G     +S  
Sbjct: 98  PVLTEVELAYLVSESP---IVGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASEV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                                +     + +E SS  L    +D  K      TNL   H+
Sbjct: 155 V------------------QKASANDTLVMELSSFQL--MGIDAFKPHIAVITNLMPTHL 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  AK             A + ADD       +    A  +           
Sbjct: 195 DYHGSFEDYVAAK---------WRIQAEMTADDYLILNANQEISAALAKTTKATVIPFST 245

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 A      +              +PG   + NAL A  +    GI   +++E L 
Sbjct: 246 QEVVDGAYLEDGMLYFKRHPIMPAANLGVPGSHNIENALAAIAVAKLSGIADDVIVEVLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R + VG            +     +    K +    + ++I++   G DR   
Sbjct: 306 HFGGVKHRLQLVGKIKDITFYNDSKSTN---ILATQKALSGFDNKKLILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  +   L  + I+       E  E+++         ++E  +   A   A +   
Sbjct: 362 FDDLVPDLRG-LKQMIIL------GESAERMKRAAEMANVPYLEAADVAAATELAFQEAQ 414

Query: 458 KQDVLVV 464
             D +++
Sbjct: 415 AGDTILL 421


>gi|33593956|ref|NP_881600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis Tohama I]
 gi|62900577|sp|Q7VUQ1|MURD_BORPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33564030|emb|CAE43296.1| putative peptidoglycan synthesis protein [Bordetella pertussis
           Tohama I]
 gi|332383374|gb|AEE68221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis CS]
          Length = 510

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 120/386 (31%), Gaps = 49/386 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A     +    +LA+TGT+GK++V +  +Q+ +  G+S+   G  S  +  A  
Sbjct: 118 RALAGLAESREYRP--RVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAALM 175

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           + L       +                +E SS  L+  R   +   A    N+ +DH+D+
Sbjct: 176 DALDQDDLPQV--------------WVLELSSFQLETTRT--LAPDAAVVLNVTQDHLDW 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H   QAY  AK R+    L     AI+  DD  +  +++       R            +
Sbjct: 220 HGDMQAYAQAKARI----LKPARLAIVNRDDPLAVAMVESLQALNVRSFGRDVPALVGDM 275

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                              D     P   +           +   + +D+  +      L
Sbjct: 276 GLELGQGVAWLTACESNDFDEPAPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNAL 335

Query: 340 HVVPGRF---------------------EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           + +                         E            VDY + S    +       
Sbjct: 336 NALAAMQLARSLDLGWGPMLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAAL 395

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G+ +V+   G  + Q   P++  +    A   ++        D   I   +      
Sbjct: 396 EGLGQQVVLIAGGQGKGQDFSPLVP-VVRRHARAVVLI-----GVDGAAIGKVLEPTGVP 449

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  EA+R A E+    D +++
Sbjct: 450 CAAAADMREAVRRAAELAQPGDAVLL 475


>gi|322517040|ref|ZP_08069927.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
 gi|322124387|gb|EFX95889.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 137/416 (32%), Gaps = 55/416 (13%)

Query: 61  PQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASR 108
            QA+  +G + +       L D +  +    P +  DN     +             A  
Sbjct: 49  AQALLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNPMVARALEKEIPVWTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + +  +    G S    G     +S      +T    +
Sbjct: 109 VSEAP---IIGITGSNGKTTTTTMIADVLNYGGKSGVLSGNIGFPASEVA-QSVTNQDTL 164

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L    ++         TNL   HIDYH + + Y  
Sbjct: 165 -----------------VMELSSFQL--MGIESFHPHIAVITNLMPTHIDYHGSFEGYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +  ++   +   + +  D     + K         +      + +    +      
Sbjct: 206 AKWNIQNKMTSDDFVILNFNQD-----LAKELATQTNAQVVPFSTVEKVDGAYLENGGLY 260

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  + +   +      +PG   V NAL    +     + +  + E L     V  R +F
Sbjct: 261 FKGELVMHADEL----GVPGSHNVENALATIAVAKLSSVSNQAIKETLSSFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T           +     +    K +    + ++I++   G DR      ++  I   
Sbjct: 317 VDTIDNVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFDELIPDIIG- 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L  + I+ +  PR       RA    G+   ++  +  +A R A E  +  DV+++
Sbjct: 372 LKKMVILGESAPR-----VKRAADRAGVTH-LDAKDVADATRIAFEQASAGDVVLL 421


>gi|110833457|ref|YP_692316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
 gi|118595639|sp|Q0VS04|MURD_ALCBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110646568|emb|CAL16044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
          Length = 441

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 122/370 (32%), Gaps = 45/370 (12%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V + ++ +            E ++A+TG++ KS+V + + Q+    G++    G      
Sbjct: 87  VVDGKEVIGDI-ELFARAASEPLVAITGSNAKSTVTTLLGQVADACGMNPGIGGNLGVP- 144

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                        + L    + L         +E SS  L+      +     +  N+ +
Sbjct: 145 ------------ALELLDDQARL-------YVLELSSFQLET--TYSLSAEVATVLNVSQ 183

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D + +   Y  AK R+++        A+   DD     +  R      R +S G   
Sbjct: 184 DHLDRYASFADYLAAKQRVYDG----CQVAVWNRDD-----LATRPPATVARQISFGAHP 234

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +  +           +    +   +      L G     N L    +  A+ ++    L 
Sbjct: 235 EADYRLDSENGQLLCRGEPLLSLSEL----ALTGHHNAMNILSVLAISDALSLNRDKALA 290

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            ++    +P R + V  +          A    +    L  I     G++I+V G  G +
Sbjct: 291 TVKTFTGLPHRCQLVAESGGVRWFNDSKATNVGATLAALTGIGESIEGKVILVAGGLG-K 349

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            Q   P+  + A      A++       ED   +   +           +   A+R A  
Sbjct: 350 GQDFSPL-AEPARQYLRAALL-----MGEDRTTVAQGMSA--APCELVADMAVAVRRAHA 401

Query: 455 MLNKQDVLVV 464
           +    D +++
Sbjct: 402 LAQPGDAVLL 411


>gi|255325343|ref|ZP_05366449.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297908|gb|EET77219.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
          Length = 487

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 142/428 (33%), Gaps = 60/428 (14%)

Query: 70  AIVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD     A   ++ P++   +    L               + + GT GK
Sbjct: 75  VVVTSFAAIPQDNPELVAAKDNDIPVIRRSDLLAALME---------GHKQVLLAGTHGK 125

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +GL          ++    +    T          S  S    +   
Sbjct: 126 TSTTSMTVSAMQHAGLD-PSFAIGGQLNRAGTNAHGGTGEAFVAEADESDASLLRYS--- 181

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  T +  DH+D+  +++AYF       + + P+    ++
Sbjct: 182 -----------------PDVAVLTTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------------KVCAIHNKQQVTIS 294
            A+D ++    +RA   G  V++ G   K                     +    ++ + 
Sbjct: 225 CAEDEHAARAGERALERGINVVAYGSAEKSFTSTVPLAAELVREETTAEGMDTTVKLDLP 284

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---T 351
              +   +   +PG   V N++ A    +  G   A + E L     V  RFE+ G    
Sbjct: 285 GVSETVRYELQIPGHHMVLNSMGALIAGVLSGGAPAAIAEGLADFSGVRRRFEYRGSVDK 344

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-----TITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
             +  R++ DYAH    +  +L+  R         GR+I  F      R         + 
Sbjct: 345 QGKPVRVFDDYAHHPTEVAAVLRAARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQ- 403

Query: 406 ALDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           AL LAD A+V D     E P +     I  + +      I + +   A R  + ++   D
Sbjct: 404 ALSLADAAVVLDIYGAREQPVEGITSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGD 463

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 464 VVLTIGAG 471


>gi|161485639|ref|NP_563409.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           str. 13]
          Length = 466

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 81  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 136 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 178 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIG--NAD 232

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 233 DEKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 292

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 293 NVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 351

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   RI+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 352 ATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 410

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 411 NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 455


>gi|149277289|ref|ZP_01883431.1| cyanophycin synthetase [Pedobacter sp. BAL39]
 gi|149232166|gb|EDM37543.1| cyanophycin synthetase [Pedobacter sp. BAL39]
          Length = 871

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 69/238 (28%), Gaps = 14/238 (5%)

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                    AD   S   M  ++         G          +       ++ +  +  
Sbjct: 616 QHCVRIAADADCNVSYFSMDESNPVIVEHCKKGGIAAVYENGYITIKKGDWKIRVE-KVT 674

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSR 354
                F    +F + N L A       G     +   LE         PGR         
Sbjct: 675 HIPLTFGGSVDFMIQNVLAATLATFLWGYKIEDIRMSLETFIPSAAQTPGRMNTFRFKEF 734

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I VD+AH     + I   +++I +   I V    GDR         + A ++ D  I
Sbjct: 735 K--ILVDFAHNPAGFKGIKTYLKSIDATEHIGVISATGDRRDSDILETARTAAEMFDKII 792

Query: 415 VTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNR------IEAIRTAIEMLNKQDVLVVA 465
           +  +   R    +++   ++ GI     + +        EA++  I        + + 
Sbjct: 793 ICQEKYLRGRKQQELIDLLLQGIREVKPEMDVIINNNGEEALKYIIATARPGSFITIL 850


>gi|255010087|ref|ZP_05282213.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147882|ref|ZP_07810075.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136649|gb|EFR54009.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 444

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 114/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEEEHDYYVIELSSFQLD--NMYKFRADIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + +     G       +           
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPI---IKRELDKHGICAHLYPFSAIKEEGSIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++  +T  +          L G+  +YN+L A       GI    +   L     V 
Sbjct: 247 VEDHEVVITAPIAFNMEQEQLALTGQHNLYNSLAAGISANLAGITKENIRRALSDFQGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIEE 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +    +  G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHEFFDRL--GLPVAEVQTGMKDAVEAAYKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|166031191|ref|ZP_02234020.1| hypothetical protein DORFOR_00877 [Dorea formicigenerans ATCC
           27755]
 gi|166029038|gb|EDR47795.1| hypothetical protein DORFOR_00877 [Dorea formicigenerans ATCC
           27755]
          Length = 456

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 90/298 (30%), Gaps = 19/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I     ++       +    E SS  L+   +   +    +  N   DH++ H T +AY 
Sbjct: 150 IGNPYTVAADLMTEHSIAVAEMSSFQLES--IVAFRPNVSAILNYTPDHLNRHHTMEAYI 207

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +       +   + Y +    ++  +          S     K I+L     I+ 
Sbjct: 208 AAKENIARNQTEDDYCVLNYEE-PVMRKFAETLKCHVLFFSSQHKLEKGIYLDNDKIIYK 266

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                      +        G     N + A  +    G+    + + +     V  R E
Sbjct: 267 NPDEVEVCHVDELQI----LGTHNYENVMAAVCMAAVYGVPMETIRKAILAFKGVAHRIE 322

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +V   +             ++    ++ +R     R  ++ G G D+D      +     
Sbjct: 323 YVAEKNGVVYYNDSKGTNPDAAIKAIQAMR-----RPTILLGGGYDKDSEYTEWINSFDG 377

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+          EKI  +        ++      EA+  A+EM    D +++
Sbjct: 378 K-VKKLIL-----MGATKEKIARDCEKCDFHDYVYVDTFEEAMNLAVEMAEPGDAVLL 429


>gi|25008803|sp|Q8XHJ0|MURC_CLOPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 457

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 72  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 127 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 169 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIG--NAD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 224 DEKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 284 NVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   RI+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 343 ATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 401

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 402 NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 446


>gi|251782916|ref|YP_002997219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391546|dbj|BAH82005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 456

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 131/427 (30%), Gaps = 59/427 (13%)

Query: 54  EDGHLF----IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F      QA+  +G + +  S    L D         P +  DN    + L    
Sbjct: 42  NDGKPFEENPAAQALLEEGIKVVCGSHPLELLDEDFEYMVKNPGIPYDNPMVTRALEKQI 101

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + +  +    G S+   G     +S  
Sbjct: 102 PVLTEVELAYLVSESP---IVGITGSNGKTTTTTMIADVLNAGGQSALLSGNIGYPASEV 158

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                                +     + +E SS  L    +D  K      TNL   H+
Sbjct: 159 V------------------QKASANDTLVMELSSFQL--MGVDAFKPHIAVITNLMPTHL 198

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  AK             A + ADD       +    A  +           
Sbjct: 199 DYHGSFEDYVAAK---------WRIQAEMTADDYLILNANQEISAALAKTTKATVIPFST 249

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 A      +              +PG   + NAL A  +    GI   +++E L 
Sbjct: 250 QEVVDGAYLEDGMLYFKGHPIMPAANLGVPGSHNIENALAAIAVAKLSGIADDVIVEVLS 309

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R + VG            +     +    K +    + ++I++   G DR   
Sbjct: 310 HFGGVKHRLQLVGKIKDITFYNDSKSTN---ILATQKALSGFDNKKLILI-AGGLDRGNE 365

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  +   L  + I+       E  E+++         ++E  +   A   A +   
Sbjct: 366 FDDLVPDLRG-LKQMIIL------GESAERMKRAAEMANVPYLEAADVAAATELAFQEAQ 418

Query: 458 KQDVLVV 464
             D +++
Sbjct: 419 AGDTILL 425


>gi|206561798|ref|YP_002232563.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           J2315]
 gi|229486475|sp|B4E6J1|MURC_BURCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198037840|emb|CAR53784.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           J2315]
          Length = 465

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 128/431 (29%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTDDNPRSEDP------EKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLN 457
           +  D  ++T+     E        + +   +               +  +A+        
Sbjct: 381 STVDALVLTEVYAAGEAAIPTASGDALSRALRAAGKVDPVFVATVDDVPDALAKV---AR 437

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 438 NGDVVITMGAG 448


>gi|182420067|ref|ZP_02951301.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237669521|ref|ZP_04529501.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376104|gb|EDT73691.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237654965|gb|EEP52525.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 461

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 132/429 (30%), Gaps = 44/429 (10%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I +  + +V ++A    +       +  IL++ +  +FL            +
Sbjct: 61  GHN--KDNIKKDVDLVVYTAAIPSDNPEILAAKDQNILLM-DRAEFLGHIMKGH-----K 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV+GT GK++  S +  +   + L    +     +     + R+             
Sbjct: 113 YNVAVSGTHGKTTCTSMLSHVTLAANLDPTIL-VGGELDVIGGNFRIGNSEYFLTEACEY 171

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                            G   N+  DH+D ++      +     F 
Sbjct: 172 KKSFLKFP--------------------PYVGIILNIDADHLDCYKDINEIADT-FMAFS 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +L+PK+   + Y DD   KE++  A                        +          
Sbjct: 211 KLIPKDGYLVGYGDDERVKEILSNAECNTVSYGFNDDSDVTAKNITFNKMGCASFDVYKS 270

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + K F     +PG+  V NAL +  + +   I     +E L K      RFE+ G    G
Sbjct: 271 DKKLFSLTLNVPGKHNVLNALASICVSLIFNIADKDTVEGLSKCKGAHKRFEYKG-ELNG 329

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    ++  L   + I   ++  VF      R +           +  D  I
Sbjct: 330 VTVIDDYAHHPTEIKATLNTAQKIDHNKVYCVFQPHTYTRTKTLFDEFTHCFNE-CDELI 388

Query: 415 VTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + D     E        E++   I           +  EA+      L   D+L+  G G
Sbjct: 389 LMDIYAAREKDTGLVSSEELGNAIRSTGVNCTNVHSHDEALEYVKSKLGDGDLLLTVGAG 448

Query: 469 H-----ETV 472
                 E  
Sbjct: 449 DVVIVGEKY 457


>gi|315606651|ref|ZP_07881662.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           buccae ATCC 33574]
 gi|315251661|gb|EFU31639.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           buccae ATCC 33574]
          Length = 443

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 114/361 (31%), Gaps = 38/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAARYTH---SKMVCITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDNC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD   K  +++      +      + K        
Sbjct: 190 MQNYVDAKMRILQNQTADDSFIFWNDDPIIKRELEKYDIKAVKCPFSELKEKGSIGYIEE 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +  ++ T             L G+  +YN+L A       GI   ++ + L     V 
Sbjct: 250 GEYKIEKPT---PFNMEQEELSLTGKHNIYNSLAAGIATNIAGIKKEVIRKSLGDFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   ++    L++++        ++   G D+      I  
Sbjct: 307 HRLEKVCKVGGVQYINDSKATNVDACWYALESMK-----NPTILILGGKDKGNDYNQIKE 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +      +  +  DN +  D          GIP   +  +  + +    EM    D ++
Sbjct: 362 LVKKKCVGLVYLGADNKKLHDNFDAL-----GIP-VRDTHSMKDCVAACYEMARPGDTVL 415

Query: 464 V 464
           +
Sbjct: 416 L 416


>gi|296394963|ref|YP_003659847.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
 gi|296182110|gb|ADG99016.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
          Length = 475

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 90/434 (20%), Positives = 143/434 (32%), Gaps = 75/434 (17%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G  A+VVS A   +D    + +     P+L        L               + V+GT
Sbjct: 67  GPTAVVVSQAAIPEDNPELVEARKRGVPVLYRPQVLAALME---------GSTRVLVSGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S      Q++GL          +     +    + +        S        
Sbjct: 118 HGKTTTTSLTVAALQQAGLD-PSFAVGGELGEAGTNAHQGSGNAFVAEADESD------- 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                          L   +  A   TN+  DH+D+  + +AY  A    F   +     
Sbjct: 170 -------------GSLLRYQPDAAVVTNVEADHLDHFGSSEAYV-AVFDQFVRQIAPGGS 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI------HLKKVCAIHNKQQVTISVEG 297
            I+  DD  +  +  RA  AG RVL  G             L          ++T+  E 
Sbjct: 216 LIVDVDDPGAAALGSRAAAAGTRVLGYGSNQAPAGVLLAARLADWSPHGEGARLTVVFEP 275

Query: 298 K-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             +  F   +PG     NAL A    +  G      +  +     V  RF+  G    G 
Sbjct: 276 GGERVFSIGVPGRHMARNALGAVLAAVFAGASLDGAISGVSAFTGVRRRFQLKGAER-GV 334

Query: 357 RIYVDYAHTSNSLEMILKNIRTI-------TSGRIIVVFGCGGDRDQGKRPIMG---KIA 406
           R++ DYAH    +   L   R +        SGR++VVF         +  +       A
Sbjct: 335 RVFDDYAHHPTEVAATLAGARALVTDPDGSCSGRLVVVFQPHM---YSRTRLFATEFAAA 391

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI------------RTAIE 454
           L+ AD  +V D     E PE        GI G +   +++ A+            +TA  
Sbjct: 392 LEAADEVLVLDVYGAREKPE-------AGITGAL-IADQVRAVPARFVPMFSSVAQTAAS 443

Query: 455 MLNKQDVLVVAGKG 468
           +    DV++  G G
Sbjct: 444 LAKPGDVVITMGAG 457


>gi|323142004|ref|ZP_08076855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413536|gb|EFY04404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 466

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 15/281 (5%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            ++ E SS  L++  +           NL  DH++ H T +AY  AK  +F +    +  
Sbjct: 168 WLAAELSSFQLEK--VSSFCPDIAVVLNLTPDHLERHHTMEAYGEAKKNIFRQQGEVQVT 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y DD   +          C         + I+++     +         E       
Sbjct: 226 VLNY-DDPIVRTWGAETKGRLCYFSRKEKLQQGIYMQD---GNFIISWDGKQETVCNISE 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     N L A       G+  + + + L     +  R E+V T           A
Sbjct: 282 LHLFGGHNEENVLAAIACGFFAGVSISDMADVLRNFRSIEHRIEYVATIDGVPYYNDSKA 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             ++S    L+  +       I++   G D+     P+M ++  +  D  I+       E
Sbjct: 342 TNTDSTIKALEAFKD----GHIILLAGGHDKLTPLEPMM-ELVKEKTDALIL--LGAAKE 394

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              K  A +  G+   +   +  +A+  A  M +K  V+++
Sbjct: 395 RFNK--AAVACGVQNIVLADSFEDAVSKAHSMAHKPQVVLL 433


>gi|291561835|emb|CBL40635.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SS3/4]
          Length = 460

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 124/421 (29%), Gaps = 46/421 (10%)

Query: 70  AIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+V ++A      +++A    N PIL   +  + L            E  +AV+GT GK+
Sbjct: 72  AVVYTAAVHPDNPEYAAAAAKNLPIL---SRAELLGQLMKNY-----EKSIAVSGTHGKT 123

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S + +I       +  I     + S   + R+  P             ++   + + 
Sbjct: 124 TTTSMLTEILMDEK-KNPTISVGGMLDSIGGNIRVGGPE---------LFVTEACEYTNS 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S                    N+  DH+D+ +  +   ++  +  E L       I  
Sbjct: 174 FLS-----------FFPNMEIILNIEADHLDFFKDIEDIRHSFRKFAELLPANGVLIINS 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               Y +                                      +            +P
Sbjct: 223 DIRDYKEICDGLPIKVITVGSDPAKSHYSAADVTFNENACATYTLLEDGKAIDTITLGVP 282

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   VYN+L +      +GI    +   L +      RFE  G    G  +  DYAH   
Sbjct: 283 GIHNVYNSLASIAAAHELGIRGEGIRNGLLRFTGTHRRFEKKGMIG-GVTVIDDYAHHPQ 341

Query: 368 SLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--- 423
            +   L   +      I  VF      R +       K     AD  ++ D     E   
Sbjct: 342 EIAATLAAAKNYPHREIWCVFQPHTYTRTKALMEDFAKALSA-ADHVVLADIYAARETDN 400

Query: 424 ---DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKGHETVHIVTNGE 479
                  +  +I           +  +AI T  +E     D+L+  G G     IV  GE
Sbjct: 401 LGISSGTLAEKIAALGTDTHYFPS-FDAIETFLLENCVNGDLLITMGAGD----IVKVGE 455

Query: 480 K 480
           K
Sbjct: 456 K 456


>gi|224369147|ref|YP_002603311.1| Mpl [Desulfobacterium autotrophicum HRM2]
 gi|223691864|gb|ACN15147.1| Mpl [Desulfobacterium autotrophicum HRM2]
          Length = 472

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 133/407 (32%), Gaps = 39/407 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V +A    +  A       I       + L+ F ++      + I+ VTGT GK++ 
Sbjct: 76  LVIVGNAVFRSNPEAVAAMERGIAFCSMP-QALNYFVAK-----DKKIILVTGTHGKTTT 129

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  +  ++GL          ++ F  + R+     I +       +        +  
Sbjct: 130 SSLMAHVLNQAGLD-PSFMIGGIVTDFNSNYRIGGGDYIVIEGDEYDTAFFDKGPKFM-- 186

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               T +  DH D  +             + LLP+         
Sbjct: 187 -----------HYAPCFTIMTGVEFDHADIFRDLDHVRQIFAAFVKGLLPESMTIAWG-- 233

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFDFLFPLPG 308
                 + +   +A  R+   G+         +          I     K   F  PL G
Sbjct: 234 --DDMNLKEILAHANNRIQRYGHGPGEWQCIDLKVEQGTSVFRIKDPEGKILRFAIPLMG 291

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    +   I I   ++   L     V  R E  G    G  +  D+AH   +
Sbjct: 292 DHNVMNALAVIAVARQINIPVDVLARALVSFSGVKRRQEVRGVKR-GITVMDDFAHHPTA 350

Query: 369 LEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDN----- 419
           +   L+ +R     GRII VF    +     R +   I   A D AD+  +   +     
Sbjct: 351 VRETLRAVRPFYTQGRIIAVFEPRTN--SSMRKVFQTIYPQAFDDADLVCICRPSAMGKI 408

Query: 420 PRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P  E   PEK+ A+I       +   +    +   ++M    D++++
Sbjct: 409 PVEERLSPEKLVADICERGTQALLFDDTDTLVDFLVKMGVTGDLMLI 455


>gi|295677761|ref|YP_003606285.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437604|gb|ADG16774.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
          Length = 467

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 137/431 (31%), Gaps = 55/431 (12%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPEN 116
           I  A     GA A+VVS+A    +       +  I +V   R   L+       G     
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I      S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH+D +    A        F 
Sbjct: 165 DASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIEFT 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             LP    A++  DD   KE++     +   +         +    V A   +   T+  
Sbjct: 205 HRLPFYGIAVLCVDDPNVKEIL--PFVSKPIIRYGLAADAQVRAVNVEAREGRMHFTVMR 262

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           E     D    LPGE  V NAL A  +   + +  A +   L   + V  RF+  G    
Sbjct: 263 EDAAPLDVTLNLPGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPV 322

Query: 355 --------GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                      +  DY H    +   +   R    GR  +V      R    R       
Sbjct: 323 VSDGQAAGSYTLVDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRFTRTRDCFEDFV 381

Query: 407 LDLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LN 457
             L+  D  ++T+     E P        +   +           + ++ +  A+   + 
Sbjct: 382 KVLSTVDALVLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVR 441

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 442 DGDVVITMGAG 452


>gi|288925518|ref|ZP_06419451.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccae D17]
 gi|288337734|gb|EFC76087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccae D17]
          Length = 443

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 114/361 (31%), Gaps = 38/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAARYTH---SKMVCITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDNC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD   K  +++      +      + K        
Sbjct: 190 MQNYVDAKMRILQNQTADDSFIFWNDDPIIKRELEKYDIKAVKCPFSELKEKGSIGYIEE 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +  ++ T             L G+  +YN+L A       GI   ++ + L     V 
Sbjct: 250 GEYKIEKPT---PFNMEQEELSLTGKHNIYNSLAAGIATNIAGIKKEVIRKSLGDFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   ++    L++++        ++   G D+      I  
Sbjct: 307 HRLEKVCKVGGVQYINDSKATNVDACWYALESMK-----NPTILILGGKDKGNDYNQIKE 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +      +  +  DN +  D          GIP   +  +  + +    EM    D ++
Sbjct: 362 LVKKKCVGLVYLGADNKKLHDNFDAL-----GIP-VRDTHSMKDCVAACYEMARPGDTVL 415

Query: 464 V 464
           +
Sbjct: 416 L 416


>gi|172037288|ref|YP_001803789.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. ATCC 51142]
 gi|254765994|sp|B1WQL2|MURC_CYAA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171698742|gb|ACB51723.1| UDP-N-acetylmuramate-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 518

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 125/427 (29%), Gaps = 54/427 (12%)

Query: 71  IVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +  ++A      PI    +    L               +AV GT GK++
Sbjct: 114 VICSTAIAHNNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTT 164

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++                     +               +  G      +
Sbjct: 165 TSSLIGYMLLKA---------------DLDPTIIVGGEVDAWEGNARIGAKGGYLVAEAD 209

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++QT             +         +  
Sbjct: 210 ESDGSLTKH-----YPNIGIVTNIELDHPDHYQTLDDVVKTFQIFETQCD-------LLI 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                + V      A    L       +                        +    +PG
Sbjct: 258 GCLDCETVASELTPAITYSLDPSKGADYTVQNVTSNHKGTFAEVWERGNYLGEIRLTIPG 317

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A  +   +G++ A++ + L        RFE  G    G     DYAH  + 
Sbjct: 318 SHNLSNALAAIAVGRKLGLNFAVIADALFTFAGAKRRFEQRGQ-CNGITFIDDYAHHPSE 376

Query: 369 LEMILKNIRTITSG----RIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           +E  L   R+   G    R++ +F      R               AD+ I+TD     E
Sbjct: 377 IEATLSAARSKVDGETISRVVAIFQPHRYSRTATFLKEFA-TCFKDADLVILTDIYSAGE 435

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETVHIVT 476
                   + +   + +     I + +    +   I +++   D+++  G G+    I+ 
Sbjct: 436 VNLHNISGQDLAEAVENNHSQVIYEPSLK-GLPQVIPDLIKPGDLVLFLGAGNLN-QIIP 493

Query: 477 NGEKKMS 483
                  
Sbjct: 494 EMINTYH 500


>gi|212692810|ref|ZP_03300938.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|237724907|ref|ZP_04555388.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D4]
 gi|212664599|gb|EEB25171.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|229436645|gb|EEO46722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
           5_1_36/D4]
          Length = 444

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 112/352 (31%), Gaps = 37/352 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I +++G++    G                         
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG-------------------QSL 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++     +  +E SS  LD   +           N+  DH+D +  Q   +      
Sbjct: 143 AYQVAEYNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFR 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +    +   I + DD   +  + +    G        + +              +   
Sbjct: 201 IIQNQTPDDAFIFWNDDPVIQRELHKYGIHGHYYPFAERKEEGTAAYVEQDKVYFTEPIA 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               ++      L G   ++N++ A       GI    + E L     V  R E V    
Sbjct: 261 FNMEQE---ELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVR 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADI 412
               I    A   NS    L++++T    + I++    G +D+G     +  +  +    
Sbjct: 318 GVDYINDSKATNVNSCWYALQSMKT----KTILIL---GGKDKGNDYNEIADLVKEKCTG 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I       +E           G+P   +  +  +A+  A  M  K + +++
Sbjct: 371 LIY--MGLHNEKLHAFFD--KFGLP-VADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|187735166|ref|YP_001877278.1| UDP-N-acetylmuramate/alanine ligase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425218|gb|ACD04497.1| UDP-N-acetylmuramate/alanine ligase [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 765

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 129/426 (30%), Gaps = 46/426 (10%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A++  AE ++ SSA    + +        I      R+     A+ L GK     + V
Sbjct: 69  ADAVSD-AEIVIYSSAIRADNPALAAARKLNI---PCMRRA-ECLAAILNGK---KGVVV 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +GT GK++ ++    + +   +                           L     +    
Sbjct: 121 SGTHGKTTTSALCAHLMREGRMR---------------PCHYVGAEIPVLGTNAHWNEDS 165

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  + S        L           N+  +H+D+++        K          
Sbjct: 166 EYLVAEGDESD-----GTLVNYIPEHSIVLNIEPEHLDHYKDLDEI---KAVFDRLCSQT 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
               I       +++V  +  N+     S         L             +  + +  
Sbjct: 218 RGKIIYCRAHPGAEDVCAKYPNSVSYGWSDADYTATDVL---ERRGRTLFTVLKGKEELG 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V N+L A  L   +G+D   V   L        RFE     S   RI  
Sbjct: 275 RVELGIPGRHNVLNSLAAIALATELGVDFPAVTRGLASFAGAKRRFE-TKYLSSSIRIVD 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDN 419
           DY H    +   L+  R++   R++V F      R Q      GK+  + AD+  V D  
Sbjct: 334 DYGHHPTEIAATLQTARSLQPNRLVVYFQPHRYTRTQLLADDFGKVLQE-ADLVFVADVY 392

Query: 420 PRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG--HE 470
           P SE P      + I   +  HG        +   A  T    L   D+ +  G G  HE
Sbjct: 393 PASELPIEGVSGQTIINAMHRHGPVETRYLPDLGIAHHTIGNALKPGDLFLTLGAGNVHE 452

Query: 471 TVHIVT 476
               + 
Sbjct: 453 CGMRIA 458


>gi|159897146|ref|YP_001543393.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890185|gb|ABX03265.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 894

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 133/395 (33%), Gaps = 41/395 (10%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TGT+GK++ A     I + +G      G TST   +    R+          A   L 
Sbjct: 495 ALTGTNGKTTTARMTAHILKMAGYHV---GMTSTDGIYIDGERVLRGDMTGPKSARMVLR 551

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEEL 237
              V    +E +  G+ +  L   ++  G+  N+  DH+           AK   L  E+
Sbjct: 552 DPTVDAAVLETARGGILREGLGYDEVDVGAILNISADHLGLRGIDTLEEMAKVKSLIIEV 611

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           + ++  A++ ADD    +++ R                     +V       +  ++ + 
Sbjct: 612 IKRDGWAVLNADDPLVAKLVARTRAKPFYFSFDPANPLVREQVQVGGRAIVVEKGVNGDM 671

Query: 298 KDFDFLFPLPGEFQVY-------------------NALVAAGLCIAIGIDSALVLEHLEK 338
                          +                    A +A  L I+I      +      
Sbjct: 672 VTLYDKGRHIPLLWTHLIPATLEGRAKFNVANALAAAALAYSLGISIENIRQGLRTFTTS 731

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQG 397
            +  PGR      +    R+ +DY H   ++  ++  +R +   G+ I V    GDR + 
Sbjct: 732 FYQTPGRLNV--FDEHPFRVILDYGHNPAAVSNLIDVVRQLPREGKAICVISVPGDRREV 789

Query: 398 KRPIMGKIALDLA-DIAIVTDDNP-----RSEDPEKIRAEII-HGIPGFIEKGNR--IEA 448
               +G++      D  I+ +D         E P  IR  +   G         R   EA
Sbjct: 790 DAREIGRLLGAGVFDQIIIKEDTSLRGRKEGEMPGYIREGLAEAGFAESNIHYTRHEREA 849

Query: 449 IRTAIEMLNKQDVLVVAGKGHETV----HIVTNGE 479
           I  A++   + D+++V     E       I+  G+
Sbjct: 850 IAMALDGAQRGDLVMVFA--DEPTEAWKQIIYWGK 882


>gi|182416775|ref|ZP_02948170.1| folylpolyglutamate synthase [Clostridium butyricum 5521]
 gi|237668111|ref|ZP_04528095.1| tetrahydrofolate synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379355|gb|EDT76852.1| folylpolyglutamate synthase [Clostridium butyricum 5521]
 gi|237656459|gb|EEP54015.1| tetrahydrofolate synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 435

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 13/196 (6%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-----GLCIAIGIDSALV 332
           +LK +   +  Q V ++     ++   PL GE Q+ N  VA         +     +  +
Sbjct: 229 NLKGIDYDNITQNVQVNGLNGIYNVDLPLLGEHQILNLCVAIKAVEVLCQVEKIQYNKEI 288

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
           +E   K     GR E   T +R   I +D AH  + + ++  NIR      ++ ++ G  
Sbjct: 289 IEESLKDVKWIGRLE---TLNRKPLIVIDGAHNIDGIRVLKNNIRKYFKYNKMYLLLGIL 345

Query: 392 GDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
            D+       M K    +A+    +T  + R+E  E ++ EI           +  EAI 
Sbjct: 346 ADKQVN---EMIKEITPMAEKIFALTPHSDRAELSEDLKREIEKVNQNVEAFDDYNEAIN 402

Query: 451 TAIEMLNKQDVLVVAG 466
            A+++    D+++V+G
Sbjct: 403 EALKVAEDDDLILVSG 418


>gi|297621605|ref|YP_003709742.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297376906|gb|ADI38736.1| UDP-N-acetylmuramate--alanine ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 447

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 85/270 (31%), Gaps = 16/270 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+G DH+D+HQT++   N   R F   +  E+      DD   + +  +  + G   
Sbjct: 174 IVTNIGLDHMDHHQTEERLLNC-FRTFFSKVQNEAFCFWCGDDKRLQTLNPKGVSYGFHE 232

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +      F  +             +  +GK F  +  L           A         
Sbjct: 233 NNRLRVDHFRQV------GWTSIFDVVFDGKRFADIEVLLAGEHHALNAAAVFGLSLRLG 286

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                +    K      R   V     G     DYAH    +   LK IR  +  R I V
Sbjct: 287 AQESKIREALKTFKGVARRCEVKGEKNGILFLDDYAHHPTEIRATLKAIRQASPDRRI-V 345

Query: 388 FGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPE------KIRAEIIHGIPGF 439
                 R    R  MG        AD  IVTD +   E P        I +E+       
Sbjct: 346 AVFQPHRYTRTRDCMGMYGSTFHSADQVIVTDIHAAGESPIPGVEVCHILSELEKNSSVK 405

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                R +      + L K DV+V  G G+
Sbjct: 406 CRYLPREDLSCKLSKFLEKGDVVVTLGAGN 435


>gi|237709499|ref|ZP_04539980.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|265754705|ref|ZP_06089757.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
 gi|229456555|gb|EEO62276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|263234819|gb|EEZ20387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
          Length = 444

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 112/352 (31%), Gaps = 37/352 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I +++G++    G                         
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNVGLAGNIG-------------------QSL 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++     +  +E SS  LD   +           N+  DH+D +  Q   +      
Sbjct: 143 AYQVAEYNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDHQMQNYVDAKFR 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +    +   I + DD   +  + +    G        + +              +   
Sbjct: 201 IIQNQTPDDAFIFWNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAYVEQDKVYFTEPIA 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               ++      L G   ++N++ A       GI    + E L     V  R E V    
Sbjct: 261 FNMEQE---ELALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVR 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADI 412
               I    A   NS    L++++T    + I++    G +D+G     +  +  +    
Sbjct: 318 GVDYINDSKATNVNSCWYALQSMKT----KTILIL---GGKDKGNDYNEIADLVKEKCTG 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I       +E           G+P   +  +  +A+  A  M  K + +++
Sbjct: 371 LIY--MGLHNEKLHAFFD--KFGLP-VADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|148244841|ref|YP_001219535.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166224747|sp|A5CW53|MURC_VESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146326668|dbj|BAF61811.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 469

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 133/415 (32%), Gaps = 41/415 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A+A+V+SSA    +          I +V    + L+      +G      +A+ GT G
Sbjct: 70  KNAQAVVISSAIKDNNPEVIKAHQLNIPIVPRA-EMLAELMRFRFG------IAIAGTHG 122

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I   + L    I     ++S   + +L     +      S  S       
Sbjct: 123 KTTTTSIITHILNMAELDPTYI-IGGILNSSGINAKLGESDYLIAEADESDASFLH---- 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  +H+  +             F   LP     I
Sbjct: 178 ----------------LQSMLSVITNIDHEHMATYNNDYQKLKDAFVSFSANLPFYGTCI 221

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD    E++   H                   K   +     +      K F     
Sbjct: 222 ICIDDKGVNEILSDIHRPIITYGFNNGADIQAINIKQVDMQMHFDIIYDKYTKPFPIKLN 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDY 362
           L G+  + N L A G+C  + I   ++ + L     V  R ++ G  +       ++ DY
Sbjct: 282 LIGKHNILNTLAAIGICCELNIKVNIIQKALANFSGVARRLDYHGKLNINNLQISLFDDY 341

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  + ++++     + +VV        R         +I    AD  I+ D  P
Sbjct: 342 GHHPKEISAVFESLKDTYQNKRLVVIFQPHRYSRTHDLFDNFTRILST-ADALILLDIYP 400

Query: 421 RSEDPEK------IRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P        +   I        +   N+ + +     +++  DVL+  G G
Sbjct: 401 AQEKPIAHINSSTLADAIRKYSSLNPVVIKNQKKILDILPNIVHNNDVLLTLGAG 455


>gi|22299713|ref|NP_682960.1| cyanophycin synthetase [Thermosynechococcus elongatus BP-1]
 gi|10047072|emb|CAC07987.1| cyanphycin synthetase [Synechococcus elongatus]
 gi|22295897|dbj|BAC09722.1| cyanophycin synthetase [Thermosynechococcus elongatus BP-1]
          Length = 896

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 10/131 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR            + VDYAH     E I + ++    G+ I V G  GDR      
Sbjct: 725 QTPGRMNLFDLGQFS--VLVDYAHNPAGYEAIGEFVQK-WPGQRIGVVGGPGDRRDQDLE 781

Query: 401 IMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAI 453
            +G+++  + D  I+ +D+     PR +    I   + H      +    + + AI+ A+
Sbjct: 782 QLGELSAKIFDWIIIKEDDDTRGRPRGDAAYWIERGVHHHSVQRQYDIIHDEVAAIQFAL 841

Query: 454 EMLNKQDVLVV 464
           +   K  ++V+
Sbjct: 842 DRAPKGSLVVI 852


>gi|312140141|ref|YP_004007477.1| UDP-N-acetylmuramate-l-alanine ligase murc [Rhodococcus equi 103S]
 gi|325676978|ref|ZP_08156650.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
 gi|311889480|emb|CBH48797.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Rhodococcus equi 103S]
 gi|325552278|gb|EGD21968.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
          Length = 498

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 89/442 (20%), Positives = 141/442 (31%), Gaps = 64/442 (14%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G  A+V + A   +D    + +     P+++        ++ AS +
Sbjct: 60  GHD--ASALDLLPGGPTAVVTTHAAIPKDNPELVEAAARGIPVILRP------AVLASLM 111

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G      L V+GT GK+S  S +    Q  G           ++    +    T     
Sbjct: 112 QGH---RTLLVSGTHGKTSTTSMLVVALQHCGFD-PSFAVGGELNEAGTNAHHGTGDVFV 167

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S                       L          TN+  DH+D+  T  AY   
Sbjct: 168 AEADESD--------------------GSLLQYDPDVVIVTNVEADHLDFFGTSDAYVQV 207

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---------- 279
               F   +      +   DD  S  + +R   AG   + V   G    +          
Sbjct: 208 -FDDFVARIAPGGLLVACLDDPGSAALARRTIEAGRDDVRVVGYGTADGVAAAGPVPVGV 266

Query: 280 ----KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                +        Q+  + E         +PG+    NAL A       G     +LE 
Sbjct: 267 ELVSWEARDTGGVAQIRFAGEDAARTLRLGVPGKHMALNALAALLAGRGAGASIDELLEG 326

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFG- 389
           L     V  RF+F G    G R++ DYAH    +  +L     +       GR++VVF  
Sbjct: 327 LAGFGGVHRRFQFTGRER-GVRVFDDYAHHPTEVRAVLGAASDLVDDDRQPGRVVVVFQP 385

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRI 446
               R        G+ ALDLAD  +V D     E+P    +  +           + +R 
Sbjct: 386 HLYSRTVTFAQEFGE-ALDLADEVVVLDVYGAREEPLPGVSGALVAQSVTKPVHYQPDRS 444

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           +  R    +    DV++  G G
Sbjct: 445 QVPRQVASLAEPGDVVITMGAG 466


>gi|312888796|ref|ZP_07748359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298671|gb|EFQ75777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
          Length = 461

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 118/363 (32%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S    I + +GL+    G      ++       
Sbjct: 111 EFAGRYTD---AKMICITGSNGKTTTTSLTYHILKNAGLNVGLAGNIGKSFAY------- 160

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++++   +  +E SS  LD   +   K       N+  DH+D +  +
Sbjct: 161 ------------QVATEQFDYYVLEISSFMLD--NMYKFKADIAVLLNITPDHLDRYDYK 206

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A      +        I  ADD  + + +         +     +          
Sbjct: 207 MENYTASKFRIAQNQTAADYFIYCADDPETIKGIAEREIEAQLLTFSIEKKVERGAYLDQ 266

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                       +         L G+  +YN++ +      + I +  + + +E    + 
Sbjct: 267 QDLIINATLEHFKMS--LNKLALQGKHNIYNSMASGITSKVLDIRNKTIRDSMEDFQNIE 324

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFVG  S    I    A   NS    L+++          V    G  D+G    M 
Sbjct: 325 HRLEFVGKISGISFINDSKATNVNSTWYALESMSN-------NVILILGGVDKGNDYNML 377

Query: 404 KIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           K  +     +IV    DN R      I       +   +   +  EA++ A  +  K D 
Sbjct: 378 KELVKQKVKSIVCMGKDNNR------IHDAFEDDVDVIVNTSSASEAVQVAYHLATKGDT 431

Query: 462 LVV 464
           +++
Sbjct: 432 VLL 434


>gi|189219420|ref|YP_001940061.1| UDP-N-acetylmuramate-alanine ligase and UDP-N-acetylmuramate
           dehydrogenase [Methylacidiphilum infernorum V4]
 gi|189186278|gb|ACD83463.1| UDP-N-acetylmuramate-alanine ligase and UDP-N-acetylmuramate
           dehydrogenase [Methylacidiphilum infernorum V4]
          Length = 732

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 134/400 (33%), Gaps = 46/400 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                ++ A ++   P++     R FL    +       + ++ VTG  GKS+ +  +  
Sbjct: 58  PLDNPEYRACVQRGIPLVK----RAFLLSLLAL-----DKKVILVTGMHGKSTTSGMIAW 108

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I +  GL           S +     LT     YL +    +     +  S    S    
Sbjct: 109 ILKDCGLD---------PSFYVGAETLTPGGSAYLGRGEYMVIEGDESDGSFLYFSPQY- 158

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                          N+  +H++Y+    A   A     E +   +   I   DD + + 
Sbjct: 159 -----------LVVLNIEEEHLNYYSDIDAILLAFK---EMIARTQDIVIFNQDDPHCRT 204

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++   + A  +      + +           ++       + +  +    +PG   V NA
Sbjct: 205 LL---YRADKKAFGYSLKERGPDFWIDSQGASQGYPVYREQNRLCNIKLQIPGMQNVQNA 261

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +  +IGI        L +   +  RFE      +   +  DYAH    ++  L++
Sbjct: 262 LAALSMATSIGISPLSASSSLSRFLGLKRRFEL-KYKGKDYEVIDDYAHHPTEIKATLRS 320

Query: 376 IRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-----R 429
            +     R + +F      R +  +P+    A   AD+ +VT+     E    I      
Sbjct: 321 AKG-RGKRTVALFQPHRYSRIKTMKPLFAH-AFHDADVVVVTEIFGAGEPSNGIDGWSLA 378

Query: 430 AEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            EI   G P  + + +        + ++   D ++  G G
Sbjct: 379 KEIKEQGHPAVLFEKDLDRLASRTLSIIQPGDTIISLGAG 418


>gi|331092378|ref|ZP_08341204.1| hypothetical protein HMPREF9477_01847 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401402|gb|EGG80988.1| hypothetical protein HMPREF9477_01847 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 432

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 130/412 (31%), Gaps = 45/412 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           V +   + D       N+    +++TR+FL    +    +  + I+ V GT+GK SV ++
Sbjct: 4   VQAEAYIADLPKFTTKNS----LEHTREFLVRLGN---PEKNKKIIHVAGTNGKGSVCAY 56

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG----------- 181
           +Q +    G  +             +                 +                
Sbjct: 57  LQAMLLADGKKTGMFISPHLEKINERIVIQGEEISDEKFLKAFHFVMDTIKEMKKDGIAH 116

Query: 182 -------VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          S   ++   L+         TN  +  I    T     +  +   
Sbjct: 117 PSYFEFLFGMGMYAFSEADVEYIILETGLGGRLDATNSIQHPIMTVITSITLDHTDILGD 176

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA------IHNK 288
                    A I  +      +  R +       +       I + K             
Sbjct: 177 TIEKIAAEKAGIIKEGIPVVCMGDREYTHVIEKRAEKLHSPCIKISKNAYEIIESTDKYI 236

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV--LEHLEKLHVVPGRF 346
              +++   K   +     G +QV NA++A      +  +   +          V  GR 
Sbjct: 237 DFFSVNAYDKYVTWKLHNSGVYQVENAMLAIKALEYLFPEKEDMSLWRRALANVVWQGRM 296

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E +        I VD AH   ++E  +K+++ +   + +++F    D+D  K   M +  
Sbjct: 297 EEIMPG-----IVVDGAHNIGAVEAFVKSVKQMKDTKNVILFSSVSDKDYEK---MIQYL 348

Query: 407 LDL--ADIAIVTD-DNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIE 454
                A+  I+T+  + R E+PE++       +    I + + ++A+  A+E
Sbjct: 349 CLHMKAECYIITEIPDTRGEEPEQLAEVFRKYVKSEVIVEPDLLKALSCAVE 400


>gi|170079000|ref|YP_001735638.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
 gi|169886669|gb|ACB00383.1| cyanophycin synthetase [Synechococcus sp. PCC 7002]
          Length = 897

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR       +      VDYAH     E +   ++    G  I V G  GDR      
Sbjct: 727 QTPGRMNLFDLGTH--HALVDYAHNPAGYEAVGAFVKN-WPGERIGVVGGPGDRRDEDLI 783

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAI 453
           ++G+IA  + D  IV  DD+ R     ++   I  GI        +    +   A+  A+
Sbjct: 784 LLGRIAAAVFDRIIVKEDDDKRGRHAGEVADLIRQGIQEENPNCQYETILDEQRALNVAL 843

Query: 454 EMLNKQDVLVV 464
           +   ++ ++V+
Sbjct: 844 DEAPQEALVVI 854


>gi|302344210|ref|YP_003808739.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
 gi|301640823|gb|ADK86145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
          Length = 446

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 115/361 (31%), Gaps = 39/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
               R   + P  ++  TGT+GKS+V S +  + +  GL +F  G   T           
Sbjct: 97  ELGFRFL-RPPAVMI--TGTNGKSTVTSLIAAMLEAEGLRAFAGGNLGTP---------- 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          +Q      +E SS   D      ++   G   N+  DH+D + + 
Sbjct: 144 --------LCAYVAGAQDDDWAVLEVSSFQTDT--AVSLRPKVGVILNITDDHLDRYDSF 193

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  +K RL       +  A++ ADD      +  A  +     +         L+   
Sbjct: 194 EQYAQSKFRLLANQAEGD-VAVLCADDPEVAARLGLAPASVWLYGAANDHRPGGRLENQR 252

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +         L+    +    N L A     A G+ +  +   +++   + 
Sbjct: 253 LALELPGRRLIKLDASRSRLWGGFNKL---NILAAGLAAAACGVSAQAMQRAIDEFQPLG 309

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R   V                  +++  L+ +      R  V+   G D+D G+  ++ 
Sbjct: 310 HRLALVAERDGVAWYDDSKGTNVGAVQAALEALA-----RPAVLLLGGRDKD-GRFALLA 363

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 A + I        E    I  +I  G+       +   A+  A +     DV++
Sbjct: 364 PQLAAWARLVIC-----FGEAGASIAGQI-EGLAERQVVADLPAAVTLAAQEAKPGDVVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|83312948|ref|YP_423212.1| UDP-N-acetylmuramate--L-alanine ligase [Magnetospirillum magneticum
           AMB-1]
 gi|109892710|sp|Q2W0H2|MURC_MAGMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|82947789|dbj|BAE52653.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
          Length = 476

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 99/283 (34%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   A   TN+  +H+D++ T +    A  R F E +P    A +  D    + ++ R  
Sbjct: 174 LPSTAVVVTNIDPEHMDHYGTVERLHEA-FRTFVENIPFYGFAAMCIDHPEVQALVARVP 232

Query: 262 NAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +         +Q         + +                     D   P+ GE  V N+
Sbjct: 233 DRKLVTYGFNHQALVRVEKLSMDITGARYDVVITDRVTGATRTIADIHLPMYGEHNVLNS 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +   +G+ + +V   L     V  RF   G  ++G  +  DY H    +  +LK 
Sbjct: 293 LAAIAVANELGLPNDVVKTALGGFKGVKRRFTRTG-EAKGVTVIDDYGHHPVEIAAVLKA 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIR--AE 431
            R+   G +I V      R      +  +       AD+ IV D     E P +    A 
Sbjct: 352 ARSACQGNVIAVV--QPHRYSRLSSLFAEFCTCFNDADMVIVADVYAAGEKPMEGFDKAA 409

Query: 432 IIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLVVAGKGH 469
           ++ G+     +     A   A+      +    D++V  G G+
Sbjct: 410 LVKGLQEHGHRRVMALADSKALAPLVNSLAGPGDMVVCLGAGN 452


>gi|90020496|ref|YP_526323.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
 gi|109892735|sp|Q21MG8|MURC_SACD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89950096|gb|ABD80111.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
          Length = 474

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 130/431 (30%), Gaps = 50/431 (11%)

Query: 57  HLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGK 112
           H+FI        GA  +V SSA    +          I +V   R+   L       +G 
Sbjct: 62  HVFIGHHATNVDGASVVVNSSAVESGNPELMEAREKRIPIV---RRAEMLGELMRYRHG- 117

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AV GT GK++  S +  I    G           ++S   +  L          
Sbjct: 118 -----IAVAGTHGKTTTTSLISSILAA-GKKDPTFIIGGLLNSAGSNAGLG--------- 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                          +AS   L          +    TN+  DH+D ++   +       
Sbjct: 163 ---ESRYLVAEADESDASFLHLQ--------PMVSVVTNIDADHMDTYEGDFSKLKQTFI 211

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DD    E++     +                 +      + +V 
Sbjct: 212 DFLHNLPFYGLAVVCGDDPIVTELIPAISRSVVTYGFNEDSDYRAFDVRQDGSKLRFKVA 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +    +PG+  V NA  A  +     +D   +   L     V  RFE  G  
Sbjct: 272 RPEGLATLELFLNMPGKHNVLNATAAVAVASEEKVDDDAIQNGLANFMGVGRRFEIYGEF 331

Query: 353 SRGG----RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
             G      +  DY H    +   +  +R     R +V+        + +       ++ 
Sbjct: 332 EVGAGPTAMLVDDYGHHPREVAATIAAVRDGWPDRRLVMVYQPHRYSRTRDLYEDFVEVL 391

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIE-MLNK 458
               D  ++ +     EDP        +   I   G+   I      E +   I+ ++  
Sbjct: 392 ST-VDQLVLLEVYSAGEDPIPGADSRHLSRTIRTRGVVDPIFVEGV-EGVPAVIKDIVQP 449

Query: 459 QDVLVVAGKGH 469
            D+++  G G+
Sbjct: 450 GDIIITQGAGN 460


>gi|229061518|ref|ZP_04198862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
 gi|228717752|gb|EEL69402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 125/405 (30%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V       S+ A+   G        +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEVELAYSISAAPFVG--------IT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++               LAK    + ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKYPVIAGNIGTVAC----------EVAQLAKENEVVVTEL 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            +   +   S                +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 169 SSFQLMGVESFQ----------PKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTETD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +        ++K               E     
Sbjct: 219 YSII-NADDADVMALSAYSKGKKVLFSATKIIEDGAYIKDNALY-------FKGEKVVKV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L+    V  R E+V T +        
Sbjct: 271 SDIVLPGKHNLENILAAMSIAKLLGVSNEAITAVLKSFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           IV+   G DR      ++             IVT   
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLI-----PYFKHVKAIVTFGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +RA    G+          +A+  A       DV+++
Sbjct: 381 TA---PKLVRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 422


>gi|330720684|gb|EGG98925.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC2047]
          Length = 482

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 129/415 (31%), Gaps = 43/415 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA + ++          I +V    + L       +       +AV GT GK+
Sbjct: 78  ADVVVTSSAINEENPEIIFARANRIPLVPRA-EMLGELMRYRHS------IAVAGTHGKT 130

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +  S +  +    G   +F IG    ++S   + +L     +      S  S        
Sbjct: 131 TTTSLLASLLAEGGLDPTFVIG--GLLNSAGTNAKLGASRILVAEADESDASFLH----- 183

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          ++ +    TN+  DH+  +    +        F   LP     + 
Sbjct: 184 ---------------LQPMTAIVTNIDADHMSTYGGDFSKLTDTFISFLHNLPFYGLVVA 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   K V+                       K   +          + +D      +
Sbjct: 229 CIDDDNVKAVLPDVSRPVITYGVAEEADYRAVDIKQTGLRMTFTAKRPNDHQDLQVTLNI 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYA 363
           PG   V NA+ A  +    G+    +   L+K   V  RF+  G          +  DY 
Sbjct: 289 PGHHNVLNAMAAIAVATDEGVSDEAICAALQKFEGVGRRFQICGEFETVNGSVLMVDDYG 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPR 421
           H    ++  L  +R+    R +V+        +  R +       L+  D  ++ +  P 
Sbjct: 349 HHPREVKATLDTVRSSWPDRRLVMLYQPHRYSRT-RDLFEDFISVLSEVDSLLLMEVYPA 407

Query: 422 SEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E+P        +   I   G    +   +  + I      L   D+L+  G G+
Sbjct: 408 DEEPIPGADGRSLCRSIRQRGQVDPVFIDHGEDVIDVLARELKDGDILLTQGAGN 462


>gi|294676377|ref|YP_003576992.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
 gi|294475197|gb|ADE84585.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
          Length = 468

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 141/463 (30%), Gaps = 58/463 (12%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-AYSL 79
           F +Q  + K ++++   R ++ G  F    G +      I +A    A  ++ S+     
Sbjct: 35  FSVQGSDAKASKITD--RLVELGATFF--EGQR---ASNIGEA----AVVVISSAIKPGN 83

Query: 80  QDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            +     R + P++     R+   L+              +A+ GT GK++  + V  + 
Sbjct: 84  PELEEARRRHLPVV-----RRAEMLAELMRLRSN------IAIAGTHGKTTTTTMVATLL 132

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
            + G     I     I ++  + R                       + VEA       +
Sbjct: 133 DKGGFDPTVI-NGGIIHAYGSNARAGAGE-----------------WMVVEADESDGSFN 174

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RL          TN+  +H+++  T +            +                  V 
Sbjct: 175 RLPATI---AIVTNIDPEHMEHWGTIENLRKGFYDFVSGIPFYGLAVCCTDHPEVQALVG 231

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNAL 316
           K                      +     N   + +  EG   +    P+PG   V NAL
Sbjct: 232 KITDRRVVTFGFNAQADVRAVNLRFEGGRNCFDIQLQAEGAVIEGCTLPMPGNHNVSNAL 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+    + + L     V  RF  VG    G  +  DY H    +  +LK  
Sbjct: 292 AAVAVARHLGMKKDEIRDALANFAGVNRRFTKVGEVLGGVTVIDDYGHHPVEIAAVLKAA 351

Query: 377 RTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED--PEKIRA 430
           R   S      V+      R    + +          AD+  + D     E+  P   R 
Sbjct: 352 RQAVSATPGARVIAAHQPHRYTRLQNLFDDFCTCFNEADVVAIADVYAAGEEPIPGASRD 411

Query: 431 E-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +     I HG        N  +  R   E     D++V  G G
Sbjct: 412 DLVSGLIRHGHRHARALLNEEDLARLVKEQARPGDIVVCLGAG 454


>gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL S4-378]
          Length = 394

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/306 (17%), Positives = 114/306 (37%), Gaps = 18/306 (5%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            ++Q       ++ P+++V+NT   L   A++   +    ++A+TG++GK++    +  I
Sbjct: 4   GAVQKDVPNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAI 63

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            + +    +  G  +          LT P    +A     ++ +    V  + +   +  
Sbjct: 64  VETTYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIA- 121

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TN+G  HI+Y  +++    AK+ +   L P            + + +
Sbjct: 122 -----------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEENL 165

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +    +   R L+ G                +    I+    D +   P+ GE  V+N +
Sbjct: 166 LLGNVDGDFRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWEPDLEIFVPIIGEHNVFNTM 225

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A      IGI+   +   L+ +     R E++ T S    +   Y  +  +L+ +LK  
Sbjct: 226 AAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTF 285

Query: 377 RTITSG 382
             + S 
Sbjct: 286 MHMDSK 291


>gi|303327347|ref|ZP_07357788.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302862287|gb|EFL85220.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 457

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 134/423 (31%), Gaps = 47/423 (11%)

Query: 56  GHLFIPQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A    G   ++V S     D    +      + +    + L+       G   
Sbjct: 56  GH-----AAENVGDVQVLVKSTAIGDDNPELVEGRRRNIAIIPRAEMLAELMRLRQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S    I   +GL    I     ++ +  +  L     +      
Sbjct: 108 ---IAIAGTHGKTTTTSLTASIFDTAGLDPTVI-IGGRLNVYGTNAHLGHGDYLIAEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S                          +  I    TN+  DH+D++++++A   A    F
Sbjct: 164 SD--------------------GSFLCLLPIINVVTNVDEDHLDHYKSREAID-AAFVQF 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     ++  DD   + ++ R                 +    + +    +     
Sbjct: 203 MNNVPFYGINVVCGDDPGVRALLPRVKRPVLTYGF--AADNHLRAVPLESGLRSRFEVWR 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + K  +   P PG   + NAL A G  +   I        L     V  RFEF G    
Sbjct: 261 EDEKLGEVSLPQPGRHNILNALAAIGAAMEADIAFERCARGLGGFGGVGRRFEFKG-EKD 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
           G  +  DY H    +   L   R +  GR I V      R    +   G+        D 
Sbjct: 320 GVTVVDDYGHHPAEIAATLATARQVFPGRRI-VAAFQPHRFSRTQAHFGEFCKVFDQVDE 378

Query: 413 AIVTDDNPRSEDPEKIR--AEIIHGIPGFIEKGNRI----EAIRTAI-EMLNKQDVLVVA 465
            ++T+    SE P        +  G+        R     +A+  A+ E+L   DVL+  
Sbjct: 379 VLLTEIYAASEKPIPGVSGQSLAQGVQQVSTTPVRYFQTLDALAQALPEVLRPGDVLLTL 438

Query: 466 GKG 468
           G G
Sbjct: 439 GAG 441


>gi|253682183|ref|ZP_04862980.1| bifunctional protein FolC [Clostridium botulinum D str. 1873]
 gi|253561895|gb|EES91347.1| bifunctional protein FolC [Clostridium botulinum D str. 1873]
          Length = 436

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGK 404
                  ++   I +D AH  + ++ + ++I T      II++ G   D+       M +
Sbjct: 302 MGRFEILNKKPLIVIDGAHNIDGIKKLKESINTYLEYKNIILILGILADKQVEN---MVE 358

Query: 405 IALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               +A   I VT ++ R E   ++   +           +  +A RTA++   + D+L+
Sbjct: 359 AITPMAQKVICVTPNSERGEIATELMKVVKKYNKNCEVVESYKDAYRTALKYCEEDDLLL 418

Query: 464 VAG 466
           ++G
Sbjct: 419 ISG 421


>gi|303232747|ref|ZP_07319432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
 gi|302481233|gb|EFL44308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
          Length = 506

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 108/310 (34%), Gaps = 26/310 (8%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I L+   +  S         E SS  L +        +A +  N+  DHI++H + +AY 
Sbjct: 155 IGLSCCEAACSRSDDEWFCAELSSFQLAE--TSNFHPVAAALLNITPDHIEWHGSMEAYA 212

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK ++F + L  ++ AII  DDAY + + +R    G  VL V         +     +N
Sbjct: 213 AAKEQIFAQ-LTADNLAIISRDDAYCRAIYERLCARGVPVLCVSTGADPQTQQAAYVENN 271

Query: 288 KQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              + +         +     +    + N L A+ L +  G D   + + L +   +  R
Sbjct: 272 IMHIRLHNRTYTLCDVRNTKLQGEHNIQNMLTASALALFAGADVQAITDVLLQFSTLEHR 331

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            EFV        +    A  ++        +R   +G+ IVV   G D+      +   +
Sbjct: 332 LEFVARIGDVDFVNDSKATNTD---AAQHALRVYDAGK-IVVLLGGHDKQTDLAALAHDV 387

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-----------GFIEKGNRIEAIRTAIE 454
               +          R      I   + + +              + + +  EA   A+ 
Sbjct: 388 VRKCSVAVCYGQAGSR------IAQALTYELSCANAEHPNTTCTIVYEPHLREAFDAAVL 441

Query: 455 MLNKQDVLVV 464
                D +++
Sbjct: 442 HAKPGDCVLL 451


>gi|326797502|ref|YP_004315321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
 gi|326548266|gb|ADZ76651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
          Length = 457

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 111/361 (30%), Gaps = 35/361 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R         + +TG++GKS+       I Q++G++    G      +        
Sbjct: 105 EFAARYTD---AKTVCITGSNGKSTTTMLTYHILQKAGINVGLAGNIGKSFAL------- 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++++      +E SS  LD       +       N+  DH+D +  +
Sbjct: 155 ------------QVATEQYEVYVLEISSFMLDDM--YDFRADIAVLLNITPDHLDRYDYK 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +            +    I   DD  + + +               +          
Sbjct: 201 MENYVNSKFRITRNQRENDIFIYCKDDPETNKALTAKEINATMYPFSLTEEVQYGAYLNE 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                  +              L G+  VYN + +  +     + +  + E +     +P
Sbjct: 261 EKEIVITLPNQERFIMSINDLALQGKHNVYNNMASGIVAKVWELRNESIRESMGDFVNIP 320

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   S    I    A   NS+   L+++     G+I+++    G  D+G    M 
Sbjct: 321 HRLEHVTKISGIEFINDSKATNVNSVWYALESL----PGKIVLI---MGGVDKGNDYSML 373

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +      IV       +D   I           +      EA++ A  +  K D ++
Sbjct: 374 RELVQSKVRGIVCL----GKDNRNIHNAFEADTDVIVNTQTMSEAVQIAYHIAQKGDTVL 429

Query: 464 V 464
           +
Sbjct: 430 L 430


>gi|169629089|ref|YP_001702738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus ATCC 19977]
 gi|169241056|emb|CAM62084.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus]
          Length = 491

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 75/498 (15%), Positives = 141/498 (28%), Gaps = 67/498 (13%)

Query: 6   LIYKDFPELINQ--LSIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
           +   +  E++      I   + R+ ++   V  DSR +  G +F+A+ G + DGH     
Sbjct: 1   MTVAEIAEIVGGRLDGISAQEARQARVTGTVEFDSRQVSPGGLFLALPGARADGHDHAR- 59

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE------- 115
                      ++        A      P +VV  T    +  ++  +            
Sbjct: 60  ----------GAAEAGAVAVLAARPVGVPAIVVPPTGVARTEVSALEHDSDGSGAAVLAA 109

Query: 116 -----------------NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
                             I+ +TG+SGK+S    +  +    G      G  +       
Sbjct: 110 TAALAAEVARRLTARGLRIVGITGSSGKTSTKDLIAAVLSPLGEVVAPPGSFNNELGHPW 169

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                T              S     + + A   G             G   N+G  H+ 
Sbjct: 170 TVLRAT-------------ESTKFLVLELSARRPGNIAELAAIAPPSIGVVLNVGTAHLG 216

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              ++QA  + K  L  + L     A++ ADDA    +  +      R         +  
Sbjct: 217 EFGSRQAIADTKGEL-PQSLSGGGVAVLNADDAAVAAMAAKTPARVVRTSVHHPADIWAT 275

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              V  +   +    + +      L              AA         + +       
Sbjct: 276 EVSVDDLARARFTLHAGQDSVPVQLAVHGEHHVSNALAAAAVALECGATLAQVAAALAGA 335

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCG-- 391
             V   R E    +     I   Y    +S+   LK + ++        R   V G    
Sbjct: 336 GPVSRRRMEVSTRDDGVTVINDAYNANPDSMMAGLKALVSMARHGGEPRRSWAVLGEMAE 395

Query: 392 -GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRI 446
            G     +   +G+ A+ L  + + +V     RS+        ++ G      +   +  
Sbjct: 396 LGPDAISEHDRIGRAAVRLDVSRLVVVGTG--RSQRAMH-AGAVMEGSWGSEAVLVDDPA 452

Query: 447 EAIRTAIEMLNKQDVLVV 464
            A       L   DV++V
Sbjct: 453 AAASLLASELAAGDVVLV 470


>gi|257389186|ref|YP_003178959.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286]
 gi|257171493|gb|ACV49252.1| FolC bifunctional protein [Halomicrobium mukohataei DSM 12286]
          Length = 817

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL G  Q  NA +AA LC  +       +    +    PGRFE +G       + +D 
Sbjct: 252 KLPLLGAHQAINAGIAATLCRQVSDVDEATIARGLRNAHWPGRFEIMGR---DPLVVLDG 308

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPR 421
           AH    +E +++ +       + VV G   D+D   R I G  ALD AD  +  + D  R
Sbjct: 309 AHNPGGVERVVETLAAFDYDELHVVAGSMVDKDL--RAIAG--ALDGADHVVACEPDRDR 364

Query: 422 SEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +ED + +              + +   A   A++   + D ++V G
Sbjct: 365 AEDEQVVAKAFRDETAASVETRSDVAGAFDVALDGAGEDDCVLVTG 410


>gi|254253334|ref|ZP_04946652.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895943|gb|EAY69823.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 465

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 133/429 (31%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH     A   GA A+VVS+A    +       +  + +V   R   L+       G   
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 TADGGRYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTDDNPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEM-LNKQ 459
           +  D  ++T+     E      + + +   +   G    +      E +  A+       
Sbjct: 381 STVDALVLTEVYAAGEAAIVTANGDALSRALRAAGKVEPVFVATVDE-VPGALAQVARNG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|289423178|ref|ZP_06424993.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156509|gb|EFD05159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 457

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 108/282 (38%), Gaps = 25/282 (8%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D     A +  NL  DH++ H T + Y  AK R+FE  +      + Y
Sbjct: 167 ELSSFQLES--IDMFSPTASTVLNLTEDHLNRHHTMENYAKAKARIFENQVDDTVCILNY 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++ + +  H             + I+L      +      I            LP
Sbjct: 225 -DDPITRSMAEDCHADVVFFSRKDKFERGIYLDDDN--NIIVNNEIEEIALLKADELSLP 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + A GL +A+G++  ++++ L+    V  R E+V T      +        +
Sbjct: 282 GGHNLENCMAAIGLTLALGVEIEVLVKVLKTFKAVEHRLEYVDTVKGVKYVNDSKGTNPD 341

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV---TDDNPRSED 424
           S    +++ +       I++   G D+      +  +IA D     ++   T D      
Sbjct: 342 STIKAVQSYKD-----PIILIAGGYDKGSDFNELF-EIAKDYVRSVVILGQTGD------ 389

Query: 425 PEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  E    HG        +  EA+  + ++  ++D++++
Sbjct: 390 ---LIEETARKHGFTDLYRVNDLKEAVEKSAQIAKEKDIVLL 428


>gi|258645243|ref|ZP_05732712.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
 gi|260402593|gb|EEW96140.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
          Length = 469

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 134/415 (32%), Gaps = 44/415 (10%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             A+ +VVSSA      +       + PI    +    +  +            +AV G 
Sbjct: 65  NNADVLVVSSAIGMDNPELQEAKSRDLPIFHRSDVLAAIFKWG---------KGIAVAGA 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GKS+ ++ + QI   + +    +           ++ L           ++       +
Sbjct: 116 HGKSTTSAMIGQIFHVAKMDPTIV-LGGFTDYLKGNSCLGHGE-----HIIAEADESDGS 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +                        TN+  DH+D++ T +    A +     +  K+  
Sbjct: 170 FLKFAT---------------FLSVVTNIEDDHLDHYGTVENIRKAFVEFLNHVTYKDGG 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI+  D    + ++ +          +    ++  + K     N        + K     
Sbjct: 215 AIVCIDSEGVQAILPQIKK-KVISFGINDSAEYRAVNKRYKKQNMLFDVYHYKEKLGTVS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V +AL A  + +  GI     ++ L     V  RF+       G  I  DYA
Sbjct: 274 LQIPGIHNVRDALGAIVVALYCGISFETSVKALSVFSGVKRRFQ-TKMKEHGVWIVDDYA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   LK  + +   R+I  F      R +  +    +  +D AD+   TD     
Sbjct: 333 HHPTEIAATLKAAKEMGRHRVICAFQPHRYSRTKLLQEEFSEAFID-ADVLFFTDIYAAG 391

Query: 423 EDPEK------IRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E P +      I   +    P        N  +  +   +++   D+L+  G G+
Sbjct: 392 ESPIQGIDGTLIPNLVKRRFPDKPINYVKNVEDLPKELYKVIKPDDMLITMGAGN 446


>gi|212696146|ref|ZP_03304274.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676775|gb|EEB36382.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 463

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 124/404 (30%), Gaps = 42/404 (10%)

Query: 78  SLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           + ++  A      P++    TR  FL            +N +AV+G+ GKS+  S + + 
Sbjct: 83  NNEELIAARSLGVPVV----TRGVFLGGLMKNY-----KNSIAVSGSHGKSTTTSMISK- 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                 +              + N       I + +A  Y  +    + S+         
Sbjct: 133 -ILMNSTKNPTILLGGDLDEIEGNVHVGDEEILVTEACEYKGNIRYYYPSIGI------- 184

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                         N+  DH+DY++             +         +   ++     +
Sbjct: 185 ------------ILNIDEDHLDYYKDLNDIIETFKSYLKNQDENSKTILNLNEENNKLVI 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                                           +   I  +G    F   + G   + NA 
Sbjct: 233 DSVQGELITYGQENPDADYNATNITFDEDGKPRFDLIMKDGSTEHFELSILGRHNINNAC 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    +  G+D   +   ++    +  R + +G N  G +I +DY H  + +++ L  +
Sbjct: 293 AAIISTLESGVDIETIKNSIQSYKGLERRMQLLG-NIDGCKIILDYGHHPSEIQVNLSAL 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE--DP----EKI 428
              T GR+I V+       + KR +  +       AD  I+TD     E  DP    + I
Sbjct: 352 AEHTKGRLICVW-QPHTYTRTKR-LFNEFVNCFDDADEVIITDIFAAREPFDPSISSKDI 409

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
              ++             +     +  + + D ++V G G    
Sbjct: 410 VDALVEKGKSAKYLPTFDQVKEYVLSDIKENDQVIVTGSGDSDY 453


>gi|282878013|ref|ZP_06286821.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
 gi|281299848|gb|EFA92209.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
          Length = 443

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 114/350 (32%), Gaps = 35/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G  +   G                   + L    
Sbjct: 102 SKMICITGSNGKTTTTSLIYHIFKSAGYDAGLAGNIGR--------------SLALQV-- 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SS  LD   +   K       N+  DH+D +      +       
Sbjct: 146 ---AEDPHEYYIIELSSFQLD--NMYKFKADIAILLNITPDHLDRYDNCMQNYVDAKMRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +    +   I + DD   K  +K+ +    +      + K          +  ++ T  
Sbjct: 201 IQNQTAQDSFIYWNDDPIIKRELKKYNIKAVQCPFSELKEKGSIGYIEEGEYTIEKPT-- 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  +YN+L A       GI + ++ + L     V  R E V     
Sbjct: 259 -PFNMEQEALALTGKHNIYNSLAAGIATDIAGIRNEVIRKSLSDFPGVEHRLEKVCKVGG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++    L+++RT       ++   G D+     PI   +      +  
Sbjct: 318 VQYINDSKATNVDACWYALESMRT-----PTILILGGKDKGNDYGPIKDLVKEKCVALMY 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DN +  D          GIP   +  +  E +    E+    D +++
Sbjct: 373 LGADNSKLHDNFDNL-----GIP-VRDTHSMKECVAACYELAKPGDTVLL 416


>gi|171060710|ref|YP_001793059.1| cyanophycin synthetase [Leptothrix cholodnii SP-6]
 gi|170778155|gb|ACB36294.1| cyanophycin synthetase [Leptothrix cholodnii SP-6]
          Length = 865

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 113/369 (30%), Gaps = 24/369 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++    +  I   SGL     G T+T   +    ++ +        A + L
Sbjct: 478 VAVTGTNGKTTATRLIAHILATSGLRV---GMTNTDGVYVNGRQIDSGDCSGPKSARNVL 534

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQA--------- 225
               V     E +  G+ +  L   +      TN+G       +Y  T +          
Sbjct: 535 MHPDVDAAVFETARGGVLREGLGFDRCQVAVVTNIGAGDHLGLNYITTVEDLAVLKRVIV 594

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A              A +                            + + +     +
Sbjct: 595 QNVAASGYAVLNAADPICAAMATTCPGQVIFFAADRQHPVMATHRAQGKRCVFVDGDQLV 654

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +     SV  +D          FQV NA+ A      +G+D   V   L         
Sbjct: 655 AAEGAWRESVSLRDIPITRGGLIGFQVENAMAAVAAAWGVGLDWDAVRRGLASFVNDADN 714

Query: 346 F--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
               F   + RG  +  DY H  +++  ++  +  +   R  VV    GDR         
Sbjct: 715 APGRFNVLDYRGATVIADYGHNPDAMRALVSAVDALPGKRRSVVISGAGDRRDEDIREQT 774

Query: 404 KIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEML 456
           +I     D  I+  D   R  +  ++   +  G+          E      AI  A+E L
Sbjct: 775 QILGQAFDDVILFQDACQRGREDGEVLRLLREGLSDATRTRRVDEIYGEFIAIDAALERL 834

Query: 457 NKQDVLVVA 465
              D+ +V 
Sbjct: 835 EPGDLCLVL 843


>gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
 gi|189082875|sp|A9KLU2|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
          Length = 454

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 124/362 (34%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A          I A+TGT+GK+S  + V +I +    S F +G       + Q  + T
Sbjct: 101 ELAYNFSK---GKIAAITGTNGKTSTTTLVGEIMKTYYKSVFVVGNIGVP--YTQMVKNT 155

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + +A                E SS  L+   ++  +    +  N+  DH++ H T 
Sbjct: 156 ENDSVTVA----------------EMSSFQLET--IETFRPDVSAILNITPDHLNRHHTM 197

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK+ + +    +++  + Y D      +   +      +L      +      + 
Sbjct: 198 EAYIEAKVNITKNQTKEDTCILNYED----SYLRTVSGRIPATILWFSSVRELERGLFLR 253

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             H   +               + G+    N + A G+ IA+ +    + E + K   V 
Sbjct: 254 ENHIIYRDDEKECVVCDVNELQIIGKHNYENVMAAVGIAIALKVPMDFIREAVTKFRGVE 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E+V T               ++    +K ++T       ++ G G D+D      + 
Sbjct: 314 HRIEYVTTKRGVKYYNDSKGTNPDASIQAIKAMQT-----KTLLIGGGYDKDSDYDDWIK 368

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                +  + ++       +  EKI       G+   +   +  EA+    E     + +
Sbjct: 369 AFDDKVTYLVLL------GQTREKIANAAKRLGVKNIVLVDSLSEAVDFCAEHAGVGETV 422

Query: 463 VV 464
           ++
Sbjct: 423 LL 424


>gi|328952740|ref|YP_004370074.1| FolC bifunctional protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453064|gb|AEB08893.1| FolC bifunctional protein [Desulfobacca acetoxidans DSM 11109]
          Length = 433

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/381 (16%), Positives = 123/381 (32%), Gaps = 40/381 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSPIY 169
               + + GT+GK SVA+ +  I  ++G           IS       QD  +T    + 
Sbjct: 53  KCRYIHIAGTNGKGSVAAMLSAIFTQAGYRIGFYSSPHLISFHERFRLQDQDITDDEVLE 112

Query: 170 LAKALSYLS--------------SQGVTHVSVEASSHGLDQHR------LDGIKLIAGSF 209
           L   +  +                  + +    A    L+          + I+ +    
Sbjct: 113 LINQVRQVVQDIELPTFFEFVTAMAFLYYSQKAADPVILETGMGGRLDATNIIQPLLTII 172

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH ++         A+     +  P        +  +    +   +      +  
Sbjct: 173 TNIAMDHREFLGNDLRAIAAEKAGIIK--PGVPVVTYVSQASARLPIQAASGVLKSPLYY 230

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G   +          +  + +T+S    +               A+    L        
Sbjct: 231 GGSDFQVKGQGNGRFRYQGRHLTLSGLQTNLVGRHQYRNAAVALAAVE--LLQEQGFHLP 288

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
              +    +    PGR E V T  +   I +D AH   +   +++ ++  +   R+I+V 
Sbjct: 289 EESIRQGLQQVRWPGRLEVVSTRPQ---IILDGAHNPAAATTLMQALKHDLIYRRLILVL 345

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEKGNR 445
           G   D+D      + +  L LA + I     PR E    PEK+++   +         + 
Sbjct: 346 GIMADKDI---RGILRRLLPLAQVVIF--SRPRYERAATPEKLKSLAANAPRETYVIDDL 400

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             AI  A  + ++ D++VV G
Sbjct: 401 AAAIAQARRLADQDDLIVVTG 421


>gi|300857309|ref|YP_003782293.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM
           13528]
 gi|300437424|gb|ADK17191.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium ljungdahlii DSM
           13528]
          Length = 457

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 82/268 (30%), Gaps = 11/268 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH+DY++      NA ++    +  K        D      +     N     
Sbjct: 182 VILNIDADHLDYYKDIDDIQNAFIKFANLIPEKGYLVGCVDDARMKNVISNVNCNVLTYG 241

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           ++ G            +  +        + K       +PG+  + NAL +  + + + I
Sbjct: 242 INAGDITAKNICFDEKSCASFD--IYKNDVKISSLHLNVPGKHNILNALASTAVSLILDI 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  +   LE       RFE  G    G  +  DYAH    ++  L         RII V
Sbjct: 300 STDNIKMGLENFKGTHRRFELKGKKQ-GITVIDDYAHHPTEIKATLNAAINYPHKRIICV 358

Query: 388 FG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFI 440
           F      R         + A D  D  I+ +  P  E          +  EI        
Sbjct: 359 FQPHTFSRTISLFKEFTE-AFDNVDELILANIYPAREKDTGKVSSAMLSKEIAKRGIKST 417

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +    +      L   D+L+  G G
Sbjct: 418 NISDFKSIVDYLKSNLKDGDLLLTVGAG 445


>gi|313203975|ref|YP_004042632.1| udp-N-acetylmuramoylalanine--d-glutamate ligase [Paludibacter
           propionicigenes WB4]
 gi|312443291|gb|ADQ79647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paludibacter
           propionicigenes WB4]
          Length = 444

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 111/362 (30%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++    V  I + +GL     G               
Sbjct: 94  EFAGRYTK---AKMICITGSNGKTTTTMLVYHILKNAGLKVGLAGNVGQ----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       ++    +  VE SS  LD   +   K       N+  DH+D ++  
Sbjct: 140 ---SLALQV-----ATDTFDYYVVELSSFQLD--GMTEFKADIAILLNITPDHLDRYEYN 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   +E   I + +D   K  + +             + +        
Sbjct: 190 FQNYVDSKFRITQNQTEEDSFIFWENDPVIKAELAKRKIQSTMYPFSIERSERTKAF--I 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   T+            L G    YN++ A      + +    + + L+    V 
Sbjct: 248 EQDELIIKTLKTLFTMPTTDLALQGMHNTYNSMAAGLAASIVNVRKESIRQSLQDFQGVE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E+V T      +    A   NS    L+++      +  VV   GG         + 
Sbjct: 308 HRLEYVATVKNIRFVNDSKATNVNSCWYALQSM------KTPVVLILGGTDKGNDYSEIE 361

Query: 404 KIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           ++        I    DN     P     +    I   ++  +  +A++ A  +    D +
Sbjct: 362 ELVKANVKALIFMGLDN----SPLHKFFD--GKIERIVDVQSMEDAVKEAYGLAESGDTV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|303234875|ref|ZP_07321500.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
 gi|302493993|gb|EFL53774.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
          Length = 461

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 98/278 (35%), Gaps = 14/278 (5%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +           N+  DH+D+++    +  A    + + L + S AII  DD   + ++ 
Sbjct: 175 ILNYYPSMAIILNIDEDHLDFYKDL-NHIVATFIGYMKNLDENSKAIINIDDKNCEPLLS 233

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNAL 316
                         +  +         +      +S E   KD +F   + G   +Y+A+
Sbjct: 234 HIKGEIITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIGRHNIYDAV 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C    ID   + +++++ H +  R E +G   +G  +  DY H    ++  LK +
Sbjct: 294 AAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGF-YKGCEVKTDYGHHPTEIKNTLKAL 352

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPE------KI 428
                G+   VF       + K  ++   A      D  +VT+     E  +       +
Sbjct: 353 DEHKKGKFYCVF-QPHTYSRTKM-LLDDFANAFYDCDEVVVTEIYAAREKFDSSIHSTDL 410

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +++             EA       + + D+++  G
Sbjct: 411 VEKLVKNGVNAKYYKTFEEARDYIRSKVCENDMVLTTG 448


>gi|288939895|ref|YP_003442135.1| UDP-N-acetylmuramate/alanine ligase [Allochromatium vinosum DSM
           180]
 gi|288895267|gb|ADC61103.1| UDP-N-acetylmuramate/alanine ligase [Allochromatium vinosum DSM
           180]
          Length = 475

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 139/428 (32%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    Q     A+A+VVS+A    +          I +V   R+   L+      YG  
Sbjct: 66  GHR-AEQVSE--ADAVVVSTAIDETNPEIQQARERRIPIV---RRAEMLAELMRFYYG-- 117

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S V  I    G   +F IG    ++S   + RL +   +    
Sbjct: 118 ----VAVAGTHGKTTTTSLVASILAEGGLDPTFVIG--GRLNSAGANARLGSTKYLVAEA 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S  S                       ++ +    TN+  DH+  +            
Sbjct: 172 DESDASFLY--------------------LQPMVSIVTNIDADHMRTYGNDFDRLRQTFM 211

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DD   + ++           +           +   +     V 
Sbjct: 212 EFLHHLPFYGLAVLCIDDPEVRALVPEVPRPVRTYGTRPEADLRASDIRQEGMRTSFLVH 271

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF---EFV 349
            +   +       LPG   V NAL A  + + +G++   ++  L     V  RF   E V
Sbjct: 272 GAEFERPLAVTLNLPGRHNVLNALAAISVALELGVEDEAIVRALAGFQGVGRRFVAREVV 331

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIAL 407
               R   +  DY H    L   L   R    GR +V+        R Q +     ++  
Sbjct: 332 DPQGRRLLVVDDYGHHPRELAATLAAAREGWPGRRLVLVFQPHRYSRTQEQFEDFVEVLS 391

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQD 460
              D  ++ +  P  E P        +   I             ++A+   +   +   D
Sbjct: 392 T-PDALVLCEVYPAGETPIPGADGRALSRAIRVRGELDPIFAQGLDAVPGLLANIIRDGD 450

Query: 461 VLVVAGKG 468
           +L+V+G G
Sbjct: 451 ILLVSGAG 458


>gi|171462988|ref|YP_001797101.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|229620049|sp|B1XT10|MURC_POLNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171192526|gb|ACB43487.1| UDP-N-acetylmuramate--alanine ligase [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 478

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 83/433 (19%), Positives = 131/433 (30%), Gaps = 68/433 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
           A  I  + A +  +  A   +  P++     R   L        G      +A+ GT GK
Sbjct: 67  AVVISTAVAGNNPEVLAARAAKIPVIQ----RAVMLGELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ AS V  +    G   +F IG    ++S   + RL     I +    S  S       
Sbjct: 117 TTTASLVASVLAEGGLDPTFVIG--GKLNSAGANARLGRGDFIVVEADESDASFLQ---- 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  DH+D +Q   A        F + +P    A+
Sbjct: 171 ----------------LFPAMEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DDA  ++++        R               V A   +   T+           P
Sbjct: 215 LCIDDANVRDIIPFVSQPVLRYGLSDDADI--RAANVRADGTRMHFTVDRRTVRRHGNKP 272

Query: 306 LPGE--------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-- 355
            P            V NAL A G+   +G+    + + L +   V  RF+  G       
Sbjct: 273 GPLNITLNLPGLHNVRNALAAIGIATELGVGDEAITKALSEFGGVGRRFQRYGEIPLDSG 332

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLAD 411
               +  DY H    +   L   R     R  +V      R    R   G+        D
Sbjct: 333 GSFTLIDDYGHHPVEMSATLAAARGAYPDRR-LVLAFQPHRYTRTRDCFGEFVQVLRSFD 391

Query: 412 IAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM---------- 455
             ++TD  P  E      D + +    I          N   A+  A  +          
Sbjct: 392 ALVLTDVYPAGEAKIPGADGKSLMKAAIAEEKNSKALLN-SAAVAYAASITEMPEKLRQV 450

Query: 456 LNKQDVLVVAGKG 468
           L   DVL+  G G
Sbjct: 451 LKDGDVLITMGAG 463


>gi|91216028|ref|ZP_01252997.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186005|gb|EAS72379.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 447

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 42/364 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS   G    NI+ +TG++GK++V + V  I + +GLS    G               
Sbjct: 94  EFASWFTG---ANIIGITGSNGKTTVTNMVYHILKNAGLSVSMAGNVG------------ 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++ Q   +  +E SS  LD   ++  +      T++  DH+D +   
Sbjct: 139 -------FSFAEQVARQSFHNYVLELSSFQLD--GVEDFRPHIAILTSITPDHLDRYHDN 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   I   DD      +++       +              + 
Sbjct: 190 FQEYIQAKFKITKNQTKDDFLIYNKDDKVIVNWLEKNTVKAQLIPFTNTTIMT----DLS 245

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA---LVAAGLCIAIGIDSALVLEHLEKLH 340
           A     ++ I +    F            +N    + A+     + I    + E +E   
Sbjct: 246 AFIENNKINIKLNHNLFTMSVNDLSVKGDHNTRNAMAASTAARLLKIRKQTIRESMESFQ 305

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R E +G  ++   I    A     +      + ++T+  + +V G   D+      
Sbjct: 306 GVEHRLEQLGKINKVAFINDSKATN---INATFYALDSMTAPTVWIVGGV--DKGNVYED 360

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           ++  +   +  I  +  DN      +KI     + +   IE  N  +A+  A  +    D
Sbjct: 361 LLPLVNEKVKAIVCLGIDN------QKIYNSFSNCVDTIIESSNMTDAVAKAYGLTEDND 414

Query: 461 VLVV 464
            +++
Sbjct: 415 AVLL 418


>gi|322807473|emb|CBZ05047.1| dihydrofolate synthase [Clostridium botulinum H04402 065]
          Length = 429

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 114/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +  + + SG                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISTVLKESGYKVGMYTSPYIEEFEERIQINGHNITKKDLGYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    +        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEEITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CELIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKLGIKIEKIHIISALKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E  +++   ++     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVAPHNDRGESSKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A       D++++ G
Sbjct: 389 CEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|262373951|ref|ZP_06067228.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
 gi|262310962|gb|EEY92049.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
          Length = 452

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 127/397 (31%), Gaps = 48/397 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   + Q        +  I VV +          R        I+A+TG++ KS+V 
Sbjct: 69  IILSPGLAPQLPEIQQAIDKGIPVVGDI-----QLLRRATDAP---IIAITGSNAKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V  + Q +G      G     +     ++   P  I L                 E S
Sbjct: 121 TLVGLMAQDAGKKVAVGGNLGRPALDLLKDK---PELIVL-----------------ELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +        N+  DH+D H     Y  AK      +       +   DD
Sbjct: 161 SFQLET--TSHLNAEVAVVLNMSEDHLDRHGDMLGYHKAK----HRIFQGVKKVVYNRDD 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             S+ ++  A       L+     ++  L+         +    +      ++    G  
Sbjct: 215 NLSRPLVPDATPMQSFGLNAPDLNQYGVLRDADGTMWLARGRERILKTSEMYIQ---GMH 271

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    +  A+G     +LE L+    +  R E+V T                +  
Sbjct: 272 NVANALACLAIGEAVGFPLPSMLETLKTFKGLEHRCEYVQTIDGVRYYNDSKGTNVGATL 331

Query: 371 MILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             +        +  G++ ++ G  G + Q  RP+   I        I+       ED   
Sbjct: 332 AAIDGLGAAIEVNKGKLALILGGQG-KGQDFRPLRNAI-QKYVKSVILI-----GEDAPV 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   I  G        +   A+  A ++   +DV+++
Sbjct: 385 IEQAI-QGTTVIQHASSLKAAVELAQQVTQAEDVVLL 420


>gi|296331096|ref|ZP_06873570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674251|ref|YP_003865923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151740|gb|EFG92615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412495|gb|ADM37614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 451

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 121/366 (33%), Gaps = 52/366 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  L        + +TG++GK++  + + ++ +     +   G   T++S    +   
Sbjct: 105 ELAYYLTN---AKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVASEVAYHADG 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                +  E SS  L        +       NL   H+DYH T+
Sbjct: 162 ------------------DEWIVTELSSFQL--MGTHAFRPEISLILNLFDAHLDYHHTR 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK +++      +  AI+  DD     + +                +  ++K   
Sbjct: 202 ENYEKAKQKVYLHQAASD-KAIVNQDDETVVRLAEAGKAENIPFSVSKTLEQGAYVKDGM 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +        + E         LPG   + N L A  +    G  +  V + L     V 
Sbjct: 261 IM-------FNGEAIIPLEEVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RP 400
            R ++V T           A    +    L         + +++   G DR  G    +P
Sbjct: 314 HRLQYVTTVKDRKFYNDSKATNILATSKALSAFD-----KPVILLAGGLDRGNGFDDLKP 368

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M  +       A++T     P+ E   K+  E+  GI       N  +A+  A  + N+
Sbjct: 369 YMKHV------KAVLTFGQTAPKLE---KLGNEM--GIQHVKRVDNVEQAVSAAFALSNE 417

Query: 459 QDVLVV 464
            DV+++
Sbjct: 418 GDVILL 423


>gi|24375703|ref|NP_719746.1| UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
 gi|38372363|sp|Q8E9P8|MURC_SHEON RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24350637|gb|AAN57190.1|AE015855_1 UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
          Length = 488

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 157/441 (35%), Gaps = 56/441 (12%)

Query: 47  VAIVGNKED---GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-- 101
           + ++G K     G   + QA     + +VVS+A + Q+          I +V   R+   
Sbjct: 61  LCLLGAKIHIGHGADNVQQA-----DVVVVSTAINPQNPEIIAAKELRIPIV---RRAEM 112

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+      +G      +A+ GT GK++  S +  +  ++G     +     ++S   + R
Sbjct: 113 LAELMRYRHG------VAIAGTHGKTTTTSLIASLYGQAGRDPTFV-IGGLLNSAGTNAR 165

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L T   +    A +  S     H+    S                   TN+  DH+D + 
Sbjct: 166 LGTSRYL---IAEADESDASFLHLQPMVS-----------------VVTNIEADHMDTYG 205

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                  +    F   LP    A++  DD   +E+M R                      
Sbjct: 206 GDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRISRHIVTYGFRDDADV--QALN 263

Query: 282 VCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                ++ + T+  +GK+  D L  LPG+  V NAL A  +     ID + +++ L +  
Sbjct: 264 FSQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQ 323

Query: 341 VVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRD 395
            +  RF+ +G  +       +  DY H  + +   +K  R     + +V+        R 
Sbjct: 324 GIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGWPEKRLVMAYQPHRYTRT 383

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEA 448
           +       ++     D  ++ D     E P        +   I + G    I   +  + 
Sbjct: 384 RDLYEDFIEVLSQ-VDCLLLLDVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPEQL 442

Query: 449 IRTAIEMLNKQDVLVVAGKGH 469
                ++L + D+L+  G G+
Sbjct: 443 AEVLPDVLQEGDLLLTQGAGN 463


>gi|126729253|ref|ZP_01745067.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
 gi|126710243|gb|EBA09295.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
          Length = 465

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 131/417 (31%), Gaps = 51/417 (12%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V+SSA      +     R   P++        L            ++ +A+ GT 
Sbjct: 70  GADVVVISSAIKPGNPELDEARRRGLPVVRRAEMLAELMRL---------KSNIAIAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +          +     I ++  + R+                      
Sbjct: 121 GKTTTTTMVATLLDAGNFDPTVV-NGGIIHAYGSNARMGQGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++  + +         F   +P    A
Sbjct: 163 MVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGSIENLRQ-GFYDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--F 302
           +   D    + ++ R  +          Q     +                   +     
Sbjct: 219 VCCTDHPEVQALVGRVTDRRVVTYGFNAQADVRAMGLRYEKGVAHFDVHFQVSGEVIEGM 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG+  V NAL A  +   +G+    +   L     V  RF  VG    G  I  DY
Sbjct: 279 TLPMPGDHNVSNALSAIAVARHLGMTGEEIRAALAAFGGVNRRFTKVG-EVNGVTIIDDY 337

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    +  +LK  R  + GR+I V      R         +       AD+  + +   
Sbjct: 338 GHHPVEIAAVLKAARQASEGRVIAV--HQPHRYTRLHHHFEEFCSCFNEADVVAIAEVYA 395

Query: 421 RSEDP--EKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P     R +++ G+          +   + +E  R   E     D++V  G G
Sbjct: 396 AGETPIEGATRDDLVAGLVRHGHRHARALRDEDDLE--RLVREQAQPGDMVVCLGAG 450


>gi|262282744|ref|ZP_06060512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
 gi|262262035|gb|EEY80733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
          Length = 450

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 129/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 83  PYNNAMVIRALEKEIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S    +                        + +E SS  L 
Sbjct: 133 VLTAGGQNGLLSGNIGFPASQVAQSASG------------------KDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++K 
Sbjct: 174 -MGIEAFHPQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKG 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +   +        V        +T   E         +PG   V NA
Sbjct: 232 MASQTQATVVPFSTTEKEDGAYLDGDV--------LTFRGEAIIKVAEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 284 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+    PR      ++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAPR------VKRAADQA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A   A  +    D++++
Sbjct: 393 EVSYLDATDVRDAAHKAFALAEPGDIVLL 421


>gi|226951755|ref|ZP_03822219.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ATCC 27244]
 gi|226837545|gb|EEH69928.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ATCC 27244]
          Length = 452

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 146/447 (32%), Gaps = 76/447 (17%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--G---------AEAIVVSS--AYSLQ 80
            +DSR                 GH  IP+ I +  G         AE I++S   A  L 
Sbjct: 34  VTDSRETPP-------------GHDQIPENIKKSFGKLDLDLLLQAEEIILSPGLAPQLP 80

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
           +    +    P++   +          R        I+A+TG++ KS+V +    + + +
Sbjct: 81  EIQQALEKGIPVI--SDI-----QLLRRATDVP---IVAITGSNAKSTVTTLFGLMAKDA 130

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G      G                   + L K    L       + +E SS  L+     
Sbjct: 131 GKKVAVGGNLGRP-------------ALDLLKDQPEL-------IVLELSSFQLET--TS 168

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +        N+  DH+D H     Y  AK      +       +   DD+ S+ ++   
Sbjct: 169 HLNAEVAVLLNMSEDHLDRHGDMLGYHKAK----HRIFQGVKKVVYNRDDSLSRPLVPDV 224

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  L+     ++  L++        +     E         + G   V NAL    
Sbjct: 225 TPMQSFGLNAPDMNQYGVLREADGSMWLARGR---ERLIKTSDLYIQGMHNVANALACLA 281

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIR 377
           L  AIG+ +  +LE L++   +  R E+V T  +             +    ++      
Sbjct: 282 LGEAIGLPTQSMLETLQQFKGLEHRCEYVQTVDQVRYYNDSKGTNVGATLAAIEGLGAAI 341

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               G++ ++ G  G + Q  +P+   I        I+       ED   I  + +H   
Sbjct: 342 EAKHGKLALILGGQG-KGQDFKPLRNAI-QKYVKTVILI-----GEDAAMI-EQALHNTT 393

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +  +A+  A +    +DV+++
Sbjct: 394 QIQHASSLKQAVDIAHQATQAEDVVLL 420


>gi|33592809|ref|NP_880453.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|33572457|emb|CAE42026.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|332382222|gb|AEE67069.1| cyanophycin synthetase [Bordetella pertussis CS]
          Length = 857

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 131/384 (34%), Gaps = 30/384 (7%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA R  G+ P  ++AV GT+GK++       I   +G      G T++   +    R+ T
Sbjct: 462 FAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAGHRV---GMTNSDGVYVGKQRIDT 516

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQT 222
                   A   L    V    +E +  G+ +  L   +      TN+G        + +
Sbjct: 517 GDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHFGLGYIS 576

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----------NAGCRVLSVGY 272
                    R+  + +  +  A++ A D    E+               N          
Sbjct: 577 TVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRAQ 636

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + ++      +  +    ++    D          FQV N + A     A+GID   +
Sbjct: 637 GHRVVYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWDTI 696

Query: 333 LEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              L          PGRF     + RG  +  DY H  ++++ +++ I T+ + R  VV 
Sbjct: 697 RHALAIFVNDAQTAPGRFNV--FDFRGATLIADYGHNPDAIQALVRAIDTMPARRRSVVI 754

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG------FIE 441
              GDR         +I     D  I+  D   R     ++ A +  G+          E
Sbjct: 755 SGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHIDE 814

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVA 465
                 AI  A+E L   D+ ++ 
Sbjct: 815 IQGEFVAIDAALERLAPGDLCLIL 838


>gi|224826079|ref|ZP_03699182.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
 gi|224601716|gb|EEG07896.1| UDP-N-acetylmuramate/alanine ligase [Lutiella nitroferrum 2002]
          Length = 463

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 81/440 (18%), Positives = 144/440 (32%), Gaps = 59/440 (13%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRK-FLSLF 105
            G     GH     A  QGA+ +V S+A    +         + P++     R   L+  
Sbjct: 49  QGAVVHFGHD---AAYMQGADVVVTSTAVKADNPEVVEAKARHIPVI----PRAMMLAEL 101

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
                G      +A+ GT GK++  S    +   +G   +F IG    +++   + +L +
Sbjct: 102 MRFKQG------IAIAGTHGKTTTTSLTASVLAAAGLDPTFVIG--GKLTAAGTNAKLGS 153

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              +      S  S                       +  +    TN+  DH+D ++   
Sbjct: 154 GEFLVAEADESDASFLH--------------------LAPVMAVVTNIDADHMDTYEHSF 193

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                    F   LP    A++  DDA  +E++ R                     +   
Sbjct: 194 DKLKQAFVDFLHRLPFYGRAVLCLDDANVREILPRVTKPVTTYGFSDDADVQAANVRAVG 253

Query: 285 IHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 V      +  F  +  LPG   V NAL A  + +  G D A + + L +   V 
Sbjct: 254 GQMHFDVVARNGNQLHFPVVLNLPGRHNVLNALSAIAIGLECGADVASIQQGLAEFAGVG 313

Query: 344 GRFEFVGTNSR----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            RF+  G  +        +  DY H    +   L  +R     +  +V      R    R
Sbjct: 314 RRFQRYGEVACPSGGHFTLVDDYGHHPVEMAATLAAVRGAFPAQR-LVLAFQPHRYTRTR 372

Query: 400 PIMGKIALDLA--DIAIVTDDNPRSEDPEKIRAEIIHGIPGFI-----EKGNRIEAIRTA 452
            +       L+  D+ ++++     E P  I A     +   +      +   IEAI   
Sbjct: 373 DLFEDFVKVLSTVDVLLLSEVYAAGETP--IVAADGRALARAVRVTGKVEPLFIEAIADL 430

Query: 453 ----IEMLNKQDVLVVAGKG 468
               ++ +   DV++  G G
Sbjct: 431 PQVILDTVQDGDVVITMGAG 450


>gi|254491328|ref|ZP_05104508.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxidans
           DMS010]
 gi|224463457|gb|EEF79726.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxydans
           DMS010]
          Length = 473

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 89/279 (31%), Gaps = 13/279 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +    TN+  DH+  ++       A    F   LP    A++  DD   KE++    
Sbjct: 178 LQPMIAVVTNIDEDHMATYEGDFGKLKATFIEFLHHLPFYGLAVMCLDDPVVKELLAEVT 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                          +         +   V     G+ +     +PG     NA  A  +
Sbjct: 238 RPFITYGQDEDADYQLVDLTQHQGQSFFTVVEKHSGERYPITLNMPGLHNALNATAAMAV 297

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIRT 378
              + ++ A   + L K   +  RF  +G          +  DY H    +   L   R 
Sbjct: 298 ARNLAVNIAACQQALLKFDGIGRRFNLLGQVDAEGGKATLIDDYGHHPTEIAATLAATRG 357

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSE------DPEKIRA 430
                 +VV        +  R +    A  L+  D+ ++ +  P  E      D   +  
Sbjct: 358 GWPDNRVVVVFQPHRYSRT-RDLFEDFAHVLSAVDVLVMLEVYPAGESKIAGADARSLCR 416

Query: 431 EI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I + G    +   N+ E       +L   DVL+  G G
Sbjct: 417 AIRLRGQVEPVFAENQEELFALLPGLLKDGDVLLTLGAG 455


>gi|170754552|ref|YP_001782797.1| FolC bifunctional protein [Clostridium botulinum B1 str. Okra]
 gi|169119764|gb|ACA43600.1| FolC bifunctional protein [Clostridium botulinum B1 str. Okra]
          Length = 429

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 114/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +  + + SG                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISTVLKESGYKVGMYTSPYIEEFEERIQINGHNITKEDLGYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    +        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEEITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CDLIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKLGIKIEKIHIISALKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E  +++   ++     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVAPHNDRGESSKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A       D++++ G
Sbjct: 389 CEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|313893638|ref|ZP_07827206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313441782|gb|EFR60206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 460

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 87/277 (31%), Gaps = 15/277 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++      TN+  DH+D+++T     NA    F E LP+   AI+  D+   + VM R  
Sbjct: 171 LRPHTIVITNIEDDHMDHYKTMDNLLNA-FCEFVETLPENGKAIVCGDNESIRYVMNRVK 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                   +     ++                            +PG+  V N+L A  +
Sbjct: 230 R-NFITYGLDDSNDYVAKNIHYVDSTLVYDIYHKGINIERVRLRVPGDHNVLNSLAAFIV 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                   A V+       +   R      +  G  +  DYAH    ++  LK  + +  
Sbjct: 289 AHDCCGVEARVITKGLGKFIGAKRRFETKGHVAGVWVVDDYAHHPTEIKATLKAAKELEK 348

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----------PEKIRAE 431
            R+I VF                 A   AD   +TD     ED          P  I+  
Sbjct: 349 HRVICVFQPHRFTRTSLLKDEFATAFTSADEVYMTDIYSSGEDPIPGIDGTTIPNAIKEA 408

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +       +  E +   +      D+++  G G
Sbjct: 409 TGQDVNYVPSVDDLPEVLAKVV---RPNDLVITMGAG 442


>gi|302380550|ref|ZP_07269015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311493|gb|EFK93509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
          Length = 441

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 133/397 (33%), Gaps = 46/397 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ S    + +      +   I VV +        A R++G     I+A+TGT+GK++ 
Sbjct: 60  IILKSPGIRMDNPVILKANELNIEVVSDL-----ELAQRIFGD--IKIVAITGTNGKTTT 112

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + ++   SG  +  IG                     +       +S   T+  +E 
Sbjct: 113 TSLMTKMLNDSGRKAISIGNIG------------------VGMLWEIYNSDKDTYFVIEC 154

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+       K       N+  DHID+H + Q Y NAK  + +         +  AD
Sbjct: 155 SSFQLES--TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKNQDENCYTVL-NAD 211

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D Y +E  K        + +     +   +K      +       ++ K+      L G 
Sbjct: 212 DEYYEECKKFTKANVYDISTSKNVKRGSFIKDNSIYFSDSDCDKIIDLKNV----NLIGY 267

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L    L   IGI+   + E L     V  R EFV   S             ++ 
Sbjct: 268 HNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVEHRLEFVRDLSGVKYYNDSKGTNVDAS 327

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +++       + +++   G D+          IA      A++     R      + 
Sbjct: 328 VKAIESFD-----KNVIILAGGYDKKVSLDNFF--IAGKDKFKALILMGQTR-----DLF 375

Query: 430 AEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +     G        +  +A+  A ++    DV+++
Sbjct: 376 EQKAKEYGFMNIYLVDDMKQAVTQANKIAESGDVVLL 412


>gi|296448262|ref|ZP_06890156.1| UDP-N-acetylmuramate/alanine ligase [Methylosinus trichosporium
           OB3b]
 gi|296254214|gb|EFH01347.1| UDP-N-acetylmuramate/alanine ligase [Methylosinus trichosporium
           OB3b]
          Length = 468

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 136/439 (30%), Gaps = 59/439 (13%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G +   GH     A   G  A+VV+S+   +D      +    L V    + L+     
Sbjct: 51  KGARVHVGHD----AQWLGDAAVVVASSAIKRDNPEIAEARRRRLPVVKRAEMLAELMR- 105

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 +  +AV GT GK++  S V  +    GL    +     I+++  + R      +
Sbjct: 106 -----DKRCVAVAGTHGKTTTTSLVATLLDAGGLDPTVV-NGGIINAYGTNARPGAGEWM 159

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +    S                          +       TN+  +H+D+     A   
Sbjct: 160 VVEADESD--------------------GTFLKLPAEIAIVTNVDPEHLDHFGDFDAVKR 199

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
              R F + LP    A +  D   ++E++    +          + +   +         
Sbjct: 200 -GFRSFIDNLPFYGFAAVCIDHPTAREIIGEIEDRRVISYGEDERAEARLVDLDLEGGVG 258

Query: 289 QQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           +   +  +              P  G     NA  A  +   +G+    +   L     V
Sbjct: 259 RFAVLIRDRDTGVETRIDRLVLPAAGRHNALNATAAIAVAHRLGVSLNDIRSGLAGFAGV 318

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RF   G    G  I+ DY H    +  +L+  R  T GR+I +      R    + + 
Sbjct: 319 KRRFTKTG-EWNGVSIFDDYGHHPVEIAAVLRAARASTKGRVIAI--MQPHRYTRLQSLF 375

Query: 403 GKIALDLADIAI--VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI------- 453
            + A   AD  +  + D  P  E   KI       +    ++    +A   A+       
Sbjct: 376 SEFAGCFADADVTLIADVYPAGE--AKIAGVDGAALARAAQEQGHADA--RALGSSNELP 431

Query: 454 ----EMLNKQDVLVVAGKG 468
               ++    D +V  G G
Sbjct: 432 QLIAKIAAPGDYVVFLGAG 450


>gi|288801604|ref|ZP_06407046.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
 gi|288335646|gb|EFC74079.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
          Length = 443

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 111/351 (31%), Gaps = 35/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I + +G  +   G                   + L   
Sbjct: 101 NSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN--------------SLALQV- 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +     +  +E SS  LD   +   +       N+  DH+D +  +   +      
Sbjct: 146 ----AEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYKFENYADAKMR 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   KE   I + DD     + K         +   +     +         +  +  
Sbjct: 200 IIQNQTKEDSFIYWNDDPV---IKKELEKFDVHAVCYPFSELKENGSIGYIEEGQYTIEQ 256

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G   +YN+L A       GI    + + L     V  R E V   +
Sbjct: 257 PEPFNMEQEDLSLTGRHNIYNSLAAGIASDISGIKKENIRKSLSDFPGVEHRLEKVCKVA 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A   ++    L+++RT       ++   G D+      I   +    A I 
Sbjct: 317 GVQYINDSKATNVDACWYALESMRT-----PTILIIGGKDKGNDYNSIKDLVKQKCAGIV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN +  D      ++  G+P   +  +  + +    E+    D +++
Sbjct: 372 YLGADNKKLHDN---FDDL--GLP-IRDTHSMKDCVAACAELAKPGDTVLL 416


>gi|302344984|ref|YP_003813337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150055|gb|ADK96317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
          Length = 443

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 110/351 (31%), Gaps = 35/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I + +G  +   G                   + L   
Sbjct: 101 NSKMICITGSNGKTTTTSLIYHIFKDAGYDAGLAGNIGN--------------SLALQV- 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +     +  +E SS  LD   +   +       N+  DH+D +  +   +      
Sbjct: 146 ----AEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYKFENYADAKMR 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   KE   I + DD     + K         +   +               +  +  
Sbjct: 200 IIQNQTKEDSFIYWNDDPV---IKKELEKFDVHAVCYPFSELKEKGSIGYIEEGQYTIEQ 256

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G   +YN+L A       GI    + + L     V  R E V   +
Sbjct: 257 PEPFNMEQEDLSLTGRHNIYNSLAAGIASDISGIKKENIRKSLSDFPGVEHRLEKVCKVA 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A   ++    L+++RT       ++   G D+      I   +    A I 
Sbjct: 317 GVQYINDSKATNVDACWYALESMRT-----PTILIIGGKDKGNDYNSIKDLVKQKCAGIV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN +  D      ++  G+P   +  +  + +    E+    D +++
Sbjct: 372 YLGADNKKLHDN---FDDL--GLP-IRDTHSMKDCVAACAELAKPGDTVLL 416


>gi|192292413|ref|YP_001993018.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           TIE-1]
 gi|229620427|sp|B3QFN0|MURC_RHOPT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|192286162|gb|ACF02543.1| UDP-N-acetylmuramate/alanine ligase [Rhodopseudomonas palustris
           TIE-1]
          Length = 467

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 139/421 (33%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           +GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDA-GDLDPTVINGGIINAYGTNARLGGGDWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A  +A  R F E +P    
Sbjct: 168 -------------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEG 297
           A++  D    + ++ +  +          Q     L               +        
Sbjct: 214 AVMCIDHPVVQTLVGKIEDRRIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAH 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D   P+PG     NA  A  +   +G+    + + L     V  RF   G    G  
Sbjct: 274 EIADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DY H    +  +LK  R  TSG++I V      R    + +  +       AD  IV
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQSTSGKVIAVV--QPHRFSRLQSLFEEFCTCFNDADAVIV 390

Query: 416 TDDNPRSEDP-EKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D  P  E P E I  +        HG    +   +          + +  D +V  G G
Sbjct: 391 ADVYPAGEAPIEGIDRDHFVLGLRAHGHRDVVALQDSASLAGVVAGLAHSGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|262380536|ref|ZP_06073690.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
 gi|262297982|gb|EEY85897.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
          Length = 482

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 138/429 (32%), Gaps = 51/429 (11%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHP 114
           FI  A    +GA  +VVS+A   ++          I VV   R+   L       +G   
Sbjct: 71  FIGHAADNIKGASVLVVSTAIDPENPEVKAAIEQRIPVV---RRAEMLGELMRYRHG--- 124

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S +  +    G+    +     ++    +  L            
Sbjct: 125 ---IAVAGTHGKTTTTSLLTCMLAEEGMDPTYV-IGGLLNRTGVNAALG----------- 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                        +AS   L+         +A   TN+  DH+D +             F
Sbjct: 170 -ASRYIVAEADESDASFLHLE--------PMAAIVTNIDADHMDTYGGSFDVLKDTFIQF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DDA  +E+M R                      V     +   T+ 
Sbjct: 221 LHKLPFYGLAVVCGDDANIREIMPRIARPLLTYGFNPDNDI--RAVDVEQDGMRSHFTVL 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            + ++        PG   V NAL A G+    G+  A +   LE    V  RF+  G   
Sbjct: 279 RKDREPLRLTINQPGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFG 338

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
                 ++  DY H    +E  +K  R     R +V+        + +        +   
Sbjct: 339 LEQGTVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMMFQPHRFSRTRDCFDDFVDVLSQ 398

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEM-LNKQD 460
             D  ++ +  P  E P        +   I + G    I        ++  I+  L   D
Sbjct: 399 -VDQLLLLEVYPAGEKPIVGADSRSLARSIRLRGEVEPILIDPVEGNLQNVIQKVLQPND 457

Query: 461 VLVVAGKGH 469
           +L+  G G+
Sbjct: 458 LLLTQGAGN 466


>gi|182624328|ref|ZP_02952113.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
 gi|177910546|gb|EDT72919.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
          Length = 457

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 72  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 127 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 169 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIG--NAD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 224 DEKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 284 NVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   +I+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 343 ATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 401

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 402 NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 446


>gi|170781769|ref|YP_001710101.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|189028984|sp|B0RIJ4|MURC_CLAMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169156337|emb|CAQ01485.1| UDP-N-acetylmuramoyl-L-alanine ligase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 476

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 8/180 (4%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T++ +G        +PG     NA  A  + + +G+D    +  L        RFE   
Sbjct: 263 FTLTHDGVSRRAALRVPGRHNAINAAGAYAVLVGLGVDPDDAIAGLAGFSGTSRRFEL-H 321

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFG-CGGDRDQGKRPIMGKIALD 408
              RG  +Y DYAH    +   L+  RT+   GRII V       R Q       ++  +
Sbjct: 322 AEVRGVSVYDDYAHHPTEVRAALEAARTVVGEGRIIAVHQPHLYSRTQMMAGDFARVYEE 381

Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           LAD  IV D     EDP       + +E            +  +A   A E+    D +V
Sbjct: 382 LADHTIVLDVFGAREDPIPGVTGALVSERFADASHVDYLPDWQQAADRAAEIARDGDFIV 441


>gi|282850404|ref|ZP_06259783.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
 gi|282579897|gb|EFB85301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
          Length = 456

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 95/281 (33%), Gaps = 16/281 (5%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +  E SS+ L+   +   + I     N+  DH+  H+T + Y  AK R+FE  L  +  
Sbjct: 159 FLVAELSSYQLET--IKYFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTDYL 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   DD    ++  RA +   ++          +                 +    D  
Sbjct: 217 VL-NIDDPVVADMEHRAPSHILKISQKKAVENGAYYAD---GQCYIAKDGVAKFVIADED 272

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   + N L    L  A+G+    +   + + H V  R E V T           A
Sbjct: 273 IHIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKTIDGITFYNDSKA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +S+   L++         +++   G D+       M  +      +  + +   R E
Sbjct: 333 TNVDSVVKALESFDQ-----QVILLAGGHDKMTPLEDFMELVKEKTKAVIFMGEAADRFE 387

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              K       G+       +  EA+    ++    D++++
Sbjct: 388 TAAK-----EAGVKLIYRALSMKEAVGQGYKLAETGDIVLL 423


>gi|257063610|ref|YP_003143282.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791263|gb|ACV21933.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
          Length = 464

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 131/422 (31%), Gaps = 41/422 (9%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH           + +V S+A    +    + +    + V      L+     L      
Sbjct: 56  GHD-AANVPEN-CDVVVASTAIPDTN-PEIVAARERGIEVWQRAHMLAELGRGL------ 106

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             LA  GT GK++ +S +       GL    +     + ++  + +  T     +    S
Sbjct: 107 KTLAAAGTHGKTTTSSMLATAIDALGLDPTFV-VGGMVDAYKTNAKSGTGEYYVVEADES 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  DH+D++             F 
Sbjct: 166 D--------------------GSFLNLSPYVALVTNVEPDHLDHYTGGIDEIRDTFAKFM 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P E   +++ DD     + + +                +       I +   +++  
Sbjct: 206 SSVPDEGACVVFGDDPELVRIARASAKRVYTYGLGEGNDIVVSGYSTKGISSTFDLSMPD 265

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                  L   PG     NA    G+  A+G+D A   E +     V  RF+ VG  + G
Sbjct: 266 GSNVTCTLKKNPGLHNALNAAGILGVVFALGLDVAAAAEGIADYTGVRRRFDLVG-EAAG 324

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAI 414
             +  DYAH    ++  L     +   R+  +F      R        GK   D AD+  
Sbjct: 325 VTVVDDYAHHPTEIKATLSAAAGLDFKRVFALFQPHRYSRTASLTDEFGKAFAD-ADVLR 383

Query: 415 VTDDNPRSEDPEK------IRAEIIH-GIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + D  P  E P +      I   +   G P       ++ EA    +E L   D+L   G
Sbjct: 384 IMDVYPAGEAPIEGVSGKLIADAVEAFGAPTDVAYLPDKDEAAARVLEELQPGDILFTMG 443

Query: 467 KG 468
            G
Sbjct: 444 AG 445


>gi|168209731|ref|ZP_02635356.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712111|gb|EDT24293.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
          Length = 457

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 72  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 127 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 169 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIG--NAD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 224 DEKVMEVLEVAKCNVLTYEINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 284 NVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   +I+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 343 ATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 401

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 402 NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 446


>gi|169824312|ref|YP_001691923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
 gi|167831117|dbj|BAG08033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
          Length = 441

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 133/397 (33%), Gaps = 46/397 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ S    + +      +   I VV +        A R++G     I+A+TGT+GK++ 
Sbjct: 60  IILKSPGIRMDNPVILKANELNIEVVSDL-----ELAQRIFGD--IKIVAITGTNGKTTT 112

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + ++   SG  +  IG                     +       +S   T+  +E 
Sbjct: 113 TSLMTKMLNDSGRKAISIGNIG------------------VGMLWEIYNSDKDTYFVIEC 154

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+       K       N+  DHID+H + Q Y NAK  + +         +  AD
Sbjct: 155 SSFQLES--TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKNQDENCYTVL-NAD 211

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D Y +E  K        + +     +   +K      +       ++ KD      L G 
Sbjct: 212 DEYYEECKKFTKANVYDISTSKNVKRGSFIKDNSIYFSDSDCDKIIDLKDV----KLIGY 267

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L    L   IGI+   + E L     V  R EFV   S             ++ 
Sbjct: 268 HNYQNVLFCVTLAKLIGINDDSIRETLMSFSGVEHRLEFVRDLSGVKYYNDSKGTNVDAS 327

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +++       + +++   G D+          IA      A++     R      + 
Sbjct: 328 VKAIESFD-----KNVIILAGGYDKKVSLDNFF--IAGKDKFKALILMGQTR-----DLF 375

Query: 430 AEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +     G        +  +A+  A ++    DV+++
Sbjct: 376 EQKAKEYGFKHIYLVDDMKQAVTQANKIAESGDVVLL 412


>gi|312878093|ref|ZP_07738028.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795135|gb|EFR11529.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 455

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 146/404 (36%), Gaps = 36/404 (8%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    I +    L +    +FL L          +N++A++GT GK++  S
Sbjct: 64  VIYTAAISKDNPELIAAKRMNLKIYERAEFLGLLMKNF-----KNVIAISGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +   +   + +     +  + +   + +       S             
Sbjct: 119 MIGYILKKACYNPTIL-VGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLKFN-------- 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +P     +   DD 
Sbjct: 170 ------------PTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K+V+ + H     + +      F         + +  V  + +         +PG   
Sbjct: 217 NVKDVISKLHTQVVCISTKEKADIFAGNISCNDGYYEFDVKNNNDEILAHIKLNIPGFHN 276

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYNAL A  +   +G++S  +   L +      R E VG    G  ++ DYAH    ++ 
Sbjct: 277 VYNALAAFAVTSKLGVESLTIEHALSEFCGASRRLEKVG-EFDGIYLFDDYAHHPTEIKA 335

Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED------ 424
            L  ++ ++ G++  +F      R +       + +L LAD  IVTD     E       
Sbjct: 336 TLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAE-SLKLADKVIVTDVYAAREKNTFGIT 394

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            EK+  ++           N  +     ++   K D++   G G
Sbjct: 395 SEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIGAG 438


>gi|237755425|ref|ZP_04584051.1| folylpolyglutamate synthase [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692425|gb|EEP61407.1| folylpolyglutamate synthase [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 413

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 114/396 (28%), Gaps = 49/396 (12%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-------- 149
            +  L  F++    +     + V GT+GK S +++++ + +  G  +             
Sbjct: 22  IKSALKEFSN---PEKNFKSILVAGTNGKGSTSAYLESLFRHYGYKTGLFTSPHLIRENE 78

Query: 150 -----------------TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                             + +    +   LT      L              V +     
Sbjct: 79  RWQIDRKEIDDKKLQNYINELKPIIEKYNLTYFEACTLL----AFKYFSDEKVDIAVVEV 134

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL   R D   ++    + +     D+                 +  ++ PA+I  +   
Sbjct: 135 GLG-GRWDSTNVLEPEISVITNVSFDHMHILGNTLLDIAYEKTGITRQDKPAVIGRNQPE 193

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               +K       +   V     F+          K +  I    +             +
Sbjct: 194 IIHWLKER---KIKEYYVKDIDYFVKEIDFNKYDYKFKKHIFENLEISMLGKRQLENSSL 250

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
                   L          ++          GR E     S+   I +D AH    L   
Sbjct: 251 ALTTFLLFLDKNNQPVVENIIRKALYNTKWKGRMEI---ISKNPFIIIDGAHNEEGLIKT 307

Query: 373 LKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRA 430
            + I+ I   + I  +F    D+D  K   M  I    +D  I +T    R+   E  + 
Sbjct: 308 FQEIKEIFPNKKIFTIFSFMKDKDTEK---MINIIKQNSDFYIAITMPFSRAMTAEDFKN 364

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               GI    E  N +EA++     ++K  ++++ G
Sbjct: 365 ---VGIKNVKE--NHLEAVKELKNSVDKDTIILITG 395


>gi|6634682|emb|CAB64534.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 1  MKLQDLIYKDFPELIN--QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHL 58
          MKL         E+            + + ++ +   DSR I    +FV + G + DGH 
Sbjct: 1  MKL------TIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHD 53

Query: 59 FIPQAIAQGAEAIVVS 74
          FI +A   GA   +  
Sbjct: 54 FIERAFENGAAVTLSD 69


>gi|332362875|gb|EGJ40668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK49]
          Length = 459

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 132/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +  N P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKNIPVI----TEVELAYLISE------APIVGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++ +       TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEALHPQIAVITNLMPTHLDYHGSLEDYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVMPFSTTEKVDGAYLEGDV--------LTFRGEAIMQAAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+    PR       RA    G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAPR-----VKRAADQAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A       D++++
Sbjct: 403 VS-YLDATDVQDAAHKAFAQAEPGDIVLL 430


>gi|323144085|ref|ZP_08078727.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
 gi|322416139|gb|EFY06831.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
          Length = 479

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 144/441 (32%), Gaps = 59/441 (13%)

Query: 44  WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-- 101
            +F+        GH    + I  GA  +VVSSA    +          I VV   R+   
Sbjct: 67  DVFI--------GHR--AENIE-GASVVVVSSAIHQGNPEVNAAIEKRIPVV---RRAEM 112

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDN 160
           L       YG      +AV GT GK++  S +  I   +G   +F IG    ++S   + 
Sbjct: 113 LGELMRYRYG------IAVAGTHGKTTTTSLISSIFAEAGLDPTFVIG--GLLNSAGTNA 164

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           RL +   +      S  S                       ++ +    TN+  DH++ +
Sbjct: 165 RLGSSRYLIAEADESDASFLH--------------------LQPMMTVVTNIEADHLETY 204

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
               +        F   LP    A++  DD   +++M R   A     ++      +   
Sbjct: 205 GGDFSKLEDTFIEFLHNLPFYGVAVVCNDDPVIRKLMPRIGRAVVTYGTIEGSDLQVVDY 264

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +     +     +            LPG     NA  A  + +  GID   +   L+   
Sbjct: 265 EQKEAGSTFT-VLRKNASPLKIELNLPGIHMAKNAAAAIAVAMEEGIDDDSIKRALKNFA 323

Query: 341 VVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRD 395
            V  RF+  G       I     DY H  + ++  +  +R     R +V+        R 
Sbjct: 324 GVGRRFQRYGKLMSPQGIVSLVDDYGHHPSEVQATIDAVRRGWPNRRLVMVFQPHRYTRT 383

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEA 448
           +       ++     D  ++ +  P  EDP        +   I   G        +  E 
Sbjct: 384 RDLYEDFIRVLQQ-VDELVLLEVYPAGEDPIQGADGRHLCRSIRAKGKLEPHFARDVAEV 442

Query: 449 IRTAIEMLNKQDVLVVAGKGH 469
                 ++ + D+++  G G+
Sbjct: 443 PEILDHIVKENDIVLTQGAGN 463


>gi|110802264|ref|YP_699749.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           SM101]
 gi|123047139|sp|Q0SQ58|MURC_CLOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110682765|gb|ABG86135.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens
           SM101]
          Length = 457

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 123/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 72  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 127 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +  + +            D
Sbjct: 169 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVKLIPNDGYIIG--NAD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 224 DKKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 284 NVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   +I+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 343 ATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 401

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 402 NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 446


>gi|153854762|ref|ZP_01995996.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
 gi|149752669|gb|EDM62600.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
          Length = 459

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 88/276 (31%), Gaps = 10/276 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                 G   N+  DH+D+ +      N+    F +LLPK+   +I  +    +E+    
Sbjct: 176 HFFPKIGVILNIDEDHLDFFKDLADIRNS-FHRFAKLLPKDGTLVINDNIPNLEEITADL 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R  +                       +            + G+  V NAL A  
Sbjct: 235 DCRVIRYGNDSSLDYSATNVLHDKKGEASFDLVKSGEFIDRISLSVNGDHNVSNALSAIA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G+    + E L+  H    RFE+ G    G  +  DYAH    +   L   +   
Sbjct: 295 VADLLGVPFTKIKEGLKSFHGTDRRFEYKG-EVNGVTVIDDYAHHPTEINATLTAAKEYP 353

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
              I  +F      R +   P     AL  AD  I+ D     E        E I  E+ 
Sbjct: 354 HKEIWCIFQPHTYTRTKALFPEFVD-ALTHADHVILADIYAARETDTLGMSSEMIAEELK 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                     +  E     ++   K DVL+  G G+
Sbjct: 413 KKGCDAYYFPSFEEIENFCLDKCQKGDVLITMGAGN 448


>gi|82703611|ref|YP_413177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
 gi|122063250|sp|Q2Y636|MURD_NITMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82411676|gb|ABB75785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
          Length = 473

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 120/397 (30%), Gaps = 34/397 (8%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + I +S    L +          I VV +    L   A    G     ++ +TG++GK
Sbjct: 67  GVDLIAISPGLPLSEPLVQQALKEGIPVVGDME--LFACAVGGTGGGMPKLVGITGSNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V +    + +++G      G                   +  A      + +      
Sbjct: 125 TTVTAMTGAMLKKAGWDVEVAGNIGP--------------AVLDALMRREDTGKMPQAWV 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+      + L A +  N+  DH+D +   Q Y  AK R+F            
Sbjct: 171 LELSSFQLET--TKSLGLDAAAVLNVSEDHLDRYAGMQEYAAAKARIFLGDSEGVQILNG 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                    +  R H               +  +       +    +    +       +
Sbjct: 229 DDPVVRQMTLAGRPHVTFSLATPQSADDFGLLREGGDTWLMQGDTRLMDARE-----LAI 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NAL A  LC A+ +    +L+ L +   +P R E V   S             
Sbjct: 284 TGRHNCANALAALALCRALAVPFEPLLQALREFRGLPHRVEKVAAFSGITFYDDSKGTNV 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    LK +         VV   GGD        +     +     ++        D E
Sbjct: 344 GATVAALKGLGQ------PVVLIAGGDGKAQNFSPLAAPIGEHGRAVVLI-----GRDAE 392

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           KI   I              EA+R + ++  + D ++
Sbjct: 393 KIAVAINECGVPLHRAQTMEEAVRKSFQLAREGDAVL 429


>gi|47565784|ref|ZP_00236823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228987057|ref|ZP_04147182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47557064|gb|EAL15393.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228772651|gb|EEM21092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 450

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 129/403 (32%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K        ++V    +     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVAVGDIV--- 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T S        
Sbjct: 275 ----LPGQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|212635040|ref|YP_002311565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           piezotolerans WP3]
 gi|212556524|gb|ACJ28978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Shewanella
           piezotolerans WP3]
          Length = 422

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 127/398 (31%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S   S++        +  I V+ +         +R     P  ++ +TG++GKS
Sbjct: 51  ATQIVISPGISVETPEVRAAFDMGIEVIGDV-----ELFARAIANSPARVIGITGSNGKS 105

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +GLS    G                   + L      L         +
Sbjct: 106 TVTTLVGEMAAAAGLSYTLGGNIGIP-------------VLDLLLNPKEL-------YVL 145

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  IA +  N+  DH+D +   ++Y  AK+ L+             
Sbjct: 146 ELSSFQLET--THSLNCIAATCLNISEDHMDRYNDLESYRQAKLNLY------------- 190

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D     +  R          +      +   +V A    +   +              
Sbjct: 191 --DQSKSVLFNREDLLTLPNSPMNQNSFGLDAPEVDAWGGAEGNIVRGSSVIMPISEVAL 248

Query: 308 GEFQVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                +  L  A  L  ++ I    ++E  ++   +  R E V   +    +    A   
Sbjct: 249 VGSHNHANLIAAMALASSVDIGREYLVEVAKQFTGLTHRCEVVADIAGVTYVNDSKATNV 308

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    ++ +         ++   GGD        +      ++ +  +       +D +
Sbjct: 309 GATVAAIEGLSEHLGE---LILIAGGDGKGADFTALATALERVSSVITL------GKDGD 359

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI A +  G           EA+  A E+    D++++
Sbjct: 360 KIAA-LKEGSQSVKT---MAEAVALANEISTAGDIVIL 393


>gi|77462660|ref|YP_352164.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221638517|ref|YP_002524779.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332557542|ref|ZP_08411864.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
 gi|109892733|sp|Q3J4M1|MURC_RHOS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766019|sp|B9KNK0|MURC_RHOSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77387078|gb|ABA78263.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221159298|gb|ACM00278.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332275254|gb|EGJ20569.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
          Length = 470

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 131/420 (31%), Gaps = 57/420 (13%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +V+SSA      +         P++     R+   L+              +A+ GT
Sbjct: 71  AAVVVISSAIKKGNPELEEARLRGLPVV-----RRAEMLAELMRMRSN------IAIAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  +  + G     I     I ++  + R                      
Sbjct: 120 HGKTTTTTMVATLLDKGGFDPTVI-NGGVIHAYGSNARAGAGE----------------- 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA       +RL          TN+  +H+++  +  A        F   +P    
Sbjct: 162 WMVVEADESDGSFNRLPATI---AIVTNIDPEHMEHWGSFDALRK-GFYDFVTNIPFYGL 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
           A+   D A  + ++ R  +          Q     +                        
Sbjct: 218 AVCCTDHAEVQALVGRVTDRRIVTFGFNAQADVRAINLRYENGIAHFDVALQSEGTGHVI 277

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I 
Sbjct: 278 EGMSLPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVG-EVGGVTII 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    +  +LK  R    GR+I V      R      +          AD+  + +
Sbjct: 337 DDYGHHPVEIAAVLKAARQAVKGRVIAV--HQPHRYSRLHSLFDDFCTCFNEADVVAIAE 394

Query: 418 DNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ED  P   R +++ G+          I   + +E  R   E     D++V  G G
Sbjct: 395 VYAAGEDPIPGAGRDDLVAGLIAHGHRHARAILCEDDLE--RLVREQARPGDMVVCLGAG 452


>gi|261876162|ref|YP_697180.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           ATCC 13124]
 gi|255529905|gb|ABG83104.2| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens ATCC
           13124]
          Length = 466

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 81  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 136 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 178 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIG--NAD 232

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 233 DEKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 292

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 293 NVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 351

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   +I+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 352 ATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 410

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 411 NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 455


>gi|254416325|ref|ZP_05030078.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420]
 gi|196176763|gb|EDX71774.1| cyanophycin synthetase [Microcoleus chthonoplastes PCC 7420]
          Length = 869

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 10/142 (7%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +      +   PGR      N       VDYAH + S E +   +R  +  R+ VV G
Sbjct: 690 DALTTFRASVAQTPGRMNL--FNLGEYHALVDYAHNAASYEAVGGFVRNWSGERVGVVGG 747

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDD-----NPRSEDPEKIRAEIIHGIPG--FIEK 442
            G  RD+    + G+++ D+ D  I+ +D      P  E  E IR  I+   P   +   
Sbjct: 748 PGDRRDEDFINL-GRLSADIFDRIIIKEDADLRGRPSGEAAELIRKGILETNPDREYEII 806

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            N  +AI TA++ +    ++V+
Sbjct: 807 LNETDAINTALDGVASGGLVVI 828


>gi|157825459|ref|YP_001493179.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia akari str.
           Hartford]
 gi|166224721|sp|A8GMP6|MURC_RICAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157799417|gb|ABV74671.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia akari str.
           Hartford]
          Length = 478

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/440 (15%), Positives = 140/440 (31%), Gaps = 67/440 (15%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA +  +      +    PI+        L           
Sbjct: 64  GH--AKQHITN-VSYVVISSAINSNNPEIKEALERKIPIIRRAEMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S +  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLMACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  + 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYKDFETLIGA-FKS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHTIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KINIPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMG 403
             V        +  DYAH    ++  L   R I    +G++I +F         +   M 
Sbjct: 330 TKVA-EYNNAVVIDDYAHHPEEIKATLATARNIADKQNGKVIAIF------QPHRYSRMQ 382

Query: 404 KIALDL------ADIAIVTDDNPRSEDP------EKIRAEII--HGIPGFIEKGNRIEAI 449
            +  D       AD+  +TD     E+P      + +  +I                + +
Sbjct: 383 HLFDDFMRCFNDADMIYITDIYAAGEEPIEGVTGQNLVDKITKNKHHDQANFLAELEDVV 442

Query: 450 RTAIEMLNKQDVLVVAGKGH 469
              I+     D++++ G G+
Sbjct: 443 GVIIDNAASGDMIIIMGAGN 462


>gi|313206533|ref|YP_004045710.1| udp-n-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|312445849|gb|ADQ82204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|315023526|gb|EFT36530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer RA-YM]
 gi|325336018|gb|ADZ12292.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Riemerella
           anatipestifer RA-GD]
          Length = 441

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 114/362 (31%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         I+A+TG++GK++  S +  I + +G++    G               
Sbjct: 93  EFASEFTN---AKIVAITGSNGKTTTTSLIYHILKDNGMNVGLGGNIGKS---------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQT 222
                        ++ +   +  +E SS  LD   +   +       NL +DH   Y+  
Sbjct: 140 ---------FAKQVADESFDYYVLEISSFQLDD--IQNFRPYISLLLNLSQDHLDQYNYN 188

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AK R+ E             D+   K + +          S+            
Sbjct: 189 YEEYALAKFRITENQEYDNFFIYNKDDEMSQKILQELDLKVKKVPFSIKETLSEGGYMND 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             I  K Q   +++ +D      L G   V N+L A+     + I +  +   L     V
Sbjct: 249 ENIVVKFQGEFTMKIRDL----ALIGNHNVANSLAASIAGKILNISNESIRNSLMTFQAV 304

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R + +   +    I    A     +      + ++T   + +V G     D      +
Sbjct: 305 DHRLQEIANLNGVKFINDSKATN---VNATYYALESMTQPTVWIVGGVDKGNDYT---EI 358

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            ++        +         D +KI               +  EAI+ +  +    D +
Sbjct: 359 EELVKKKVKAIVC-----LGIDNQKIIDFFRDKKEFIYNTSSMEEAIKISKSIAEAGDAV 413

Query: 463 VV 464
           ++
Sbjct: 414 LL 415


>gi|268610569|ref|ZP_06144296.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus flavefaciens
           FD-1]
          Length = 471

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 130/429 (30%), Gaps = 54/429 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           FI Q      GA+ IV ++A      +  A   S  P+L   +    L +  S       
Sbjct: 58  FIGQRAENIEGADLIVHTAAIMADNPELIAAKASGVPVLERADL---LGIVTSWY----- 109

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            N + V+GT GK+S  S + QI   +G                  + +   S I + ++ 
Sbjct: 110 SNAICVSGTHGKTSTTSMITQILYTAG--VDLSAYIGGKLPCIGGSGIAGKSDILVCESC 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
            +          +                       N+  DH+DY  T +    +  +  
Sbjct: 168 EFEDHFLKFFPDISV-------------------ILNIDADHLDYFGTLENIIKSFHKFN 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E     +   I  +D+   K +                   +    K           + 
Sbjct: 209 EN--TSKCIIINGSDENSMKSLEGITGKEIITFGKDSSCDYYPENVKHENGLLTTYDAMY 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              K       + G   V N+L A      +G +   + + LE+      RFE +G    
Sbjct: 267 KGEKLGTITLHVAGIHNVLNSLAAVAAARYVGAEFDAIQKGLEEFRGAKRRFEKLGFEK- 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIA 413
           G  +  DYAH    LE  L     +    +  VF      R +       ++   + D A
Sbjct: 326 GITVVDDYAHHPTELEATLNAAMEMNFNHVWAVFQPFTFSRTKLLLDDFARVL-QIPDHA 384

Query: 414 IVTDD-NPRSEDPEKIR-AEIIHGIPGFIEKGNRIEA--------------IRTAIEMLN 457
           ++TD    R ++   I    +   IP  +      +A                   E   
Sbjct: 385 VLTDIMGSREKNTYGIFTRHLAEKIPDCVWFPQDEQAEWTDERKYANFGQICDYICEHAQ 444

Query: 458 KQDVLVVAG 466
           + D+++  G
Sbjct: 445 EGDLVITLG 453


>gi|258404875|ref|YP_003197617.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797102|gb|ACV68039.1| UDP-N-acetylmuramate/alanine ligase [Desulfohalobium retbaense DSM
           5692]
          Length = 454

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/276 (21%), Positives = 99/276 (35%), Gaps = 14/276 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  I    TN+  DH+D++  Q A  ++ +    ++       +   DD   + ++ R  
Sbjct: 171 LLPIMTVVTNVDADHMDFYADQTAIDDSFVHFMNQIPFYGLNVV-CGDDPGVQRLLPRIK 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                             + +          I  E    +     PG   V NAL AA L
Sbjct: 230 RPVVTYGLEEDNDV--RAEILGFNGGSHFRLIYQERPIGELHLKHPGRHNVLNALAAAAL 287

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +  G+    V+  L+    V  RFE  G    G  +  DY H    +   L   R    
Sbjct: 288 ALEAGVSEDAVIHGLDCFGGVGRRFETKG-ERDGVLVVDDYGHHPTEIAATLTTARETYP 346

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP------EKIRAEII 433
            R +VV        + +  + G+   A + AD+ ++T+  P SE P        +   I 
Sbjct: 347 ERRLVVLFQPHRFTRTQ-ALFGQFCRAFEEADLLLLTEIYPASETPIPGVTGANLAQGIR 405

Query: 434 HGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
                 +E  N  EA + A+  ML   D+L+  G G
Sbjct: 406 QVSQTRVEFFNDFEAAQEALPGMLRPGDLLITLGAG 441


>gi|168205753|ref|ZP_02631758.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|168217610|ref|ZP_02643235.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
 gi|189029222|sp|Q0TMG0|MURC_CLOP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170662717|gb|EDT15400.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|182380340|gb|EDT77819.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
          Length = 457

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 72  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 127 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 169 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIG--NAD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 224 DEKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 284 NVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   +I+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 343 ATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 401

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 402 NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 446


>gi|160894558|ref|ZP_02075334.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
 gi|156863869|gb|EDO57300.1| hypothetical protein CLOL250_02110 [Clostridium sp. L2-50]
          Length = 460

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 79/277 (28%), Gaps = 9/277 (3%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                      N+  DH+D+    +         F    P+    I+  D  Y   V + 
Sbjct: 175 HAFSPYISIILNVDADHLDFFSGIEEIA-ESFHTFATKTPENGKVIVNGDMKYFDTVTRD 233

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                                +           +       D    + G+  VYN+L A 
Sbjct: 234 LKCQVITFGEDPKNHYSAANIRFDEFGRPTYTLVIDGENITDITLHVFGKHNVYNSLSAI 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                +GID   +   L        RFE+ GT     ++  DYAH    +   L   +  
Sbjct: 294 AAATELGIDIDAIKAGLLHCKGAERRFEYKGTILDNVKVMDDYAHHPTEIAATLAAAKNT 353

Query: 380 TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEI 432
               +  VF      R         K+   + D  IV D     E        +++  +I
Sbjct: 354 DYHELWCVFQPHTYSRTYALFDDFAKVLS-VCDHVIVADIYAAREKDTGLVSSKQLAEKI 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                      +  +     ++   K D+L+  G G+
Sbjct: 413 ASYGTDAFYLPSFTDIENYLLKNCKKNDLLITMGAGN 449


>gi|288958924|ref|YP_003449265.1| UDP-N-acetylmuramate--alanine ligase [Azospirillum sp. B510]
 gi|288911232|dbj|BAI72721.1| UDP-N-acetylmuramate--alanine ligase [Azospirillum sp. B510]
          Length = 472

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 140/425 (32%), Gaps = 59/425 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA  IVVSSA    +          + VV   R+   L            +  +A+ GT
Sbjct: 66  AGAAVIVVSSAVKRDNPEVVAARAALVPVV---RRAEMLGELMRL------KWAIAIGGT 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  + + + L    I     I+++  + RL T   + +    S        
Sbjct: 117 HGKTTTTSMVGHMLEHANLDPTVI-NGGIINAYGSNTRLGTGDWMVVEADESD------- 168

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D++ T      A    F + +P    
Sbjct: 169 -------------GTFVKLPACIAVVTNMDPEHLDFYGTFDNAR-AAFDSFVQNIPFYGF 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A +  D    + ++ R  +          Q     +         +   +  +    +  
Sbjct: 215 AALCIDHPEVQAMIPRVSDRRIVTYGFSPQADIRAVNVELGPDGAKYDVLIYDRHTGESR 274

Query: 304 F------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+ G   V N+L    +   +G+   ++ + + K   V  RF   G  + G  
Sbjct: 275 AIAGVRLPMYGPHNVQNSLACFAVGNEMGLPDVVMRDSMAKFQGVKRRFTKTG-EANGIT 333

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL------AD 411
           +  DY H    +  +LK  RT  +GR I V          +   +  +  +       AD
Sbjct: 334 VIDDYGHHPVEIAAVLKAARTAGTGRTIAVV------QPHRYSRLANLFEEFCTCFNDAD 387

Query: 412 IAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             IV D     E P      + +   + +HG    +   N+ E  +   EM    D +V 
Sbjct: 388 AVIVADVYAAGEAPIEGVSRDSLVEGLRMHGHRHVVALQNQQELAQVVREMARPGDFVVC 447

Query: 465 AGKGH 469
            G G+
Sbjct: 448 LGAGN 452


>gi|153809197|ref|ZP_01961865.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
 gi|149128173|gb|EDM19393.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
          Length = 444

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEDHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD   +  + +    G +     +           
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPIIRHELAKH---GLKAHLYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++ ++T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 247 VEDHEVKITEPIAFNMEQEELALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFRGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N +  D          G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHNEKLHDFFD-----RFGLPVADVQTGMKDAVEAAYKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|311031456|ref|ZP_07709546.1| folyl-polyglutamate synthase [Bacillus sp. m3-13]
          Length = 426

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 134/392 (34%), Gaps = 35/392 (8%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L         +    I+ + GT+GK S   F++ + + +GL+       +      Q 
Sbjct: 26  RILQFLEKVANPQDQIQIVHIGGTNGKGSTLRFLESVLKETGLAVGVFHSPAYRFINDQL 85

Query: 160 NRLTTP-------SPI----------------YLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           +   T          I                 L  A+++     +  V +     GL  
Sbjct: 86  SVNGTSITDEEMVEIIRVFNNHGLEEAGLTEFELQTAMAFYYFATMKKVDIALIEVGLG- 144

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            R D   ++  + + +     D+     +           ++ +  P I    +  +KEV
Sbjct: 145 GREDSTNVMTPALSIITNVGHDHIGFLGSSVEEIAHHKAGIIKRGVPVISGEQNPAAKEV 204

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +++        +    +     LK+        +  +    ++ +       +    +  
Sbjct: 205 IQKEAFMKESPVYFMEEEFSYRLKEGKLTFQSAKKNL----EELELSLQGDHQGANASLA 260

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           + A L +    D       L++  +            +   I +D AH   +++ ++  I
Sbjct: 261 IMAYLLLTDKWDMEYDERVLKEGLLKAEHPGRFELVQKEPPIILDGAHNEEAVDALVNTI 320

Query: 377 R-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIH 434
           +   ++ R++V+F    D+      +M +    +AD  I T  N PR+   E +    + 
Sbjct: 321 KMNFSNKRVVVLFSALKDKPIE---LMVRKLEPIADEIIFTSFNFPRAARAEDVFQ--VS 375

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +     + +   A++TAI  ++   VL++ G
Sbjct: 376 ELQEKEFEEDWKTALQTAISRVDGNSVLLITG 407


>gi|293391359|ref|ZP_06635693.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951893|gb|EFE02012.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 497

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 152/475 (32%), Gaps = 65/475 (13%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQ--G 67
             E++     + +   +   + V+   R I+AG  +F+        GH           G
Sbjct: 55  IAEILLNEG-YSISGSDIAESAVTQ--RLIKAGANVFI--------GHQ-----AENIVG 98

Query: 68  AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V+SSA    +       +   P++      + L+      +G      +AV GT G
Sbjct: 99  ASVVVISSAIHGDNPEVMAAKDARIPVIQRA---QMLAELMRFRHG------IAVAGTHG 149

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  I   +GL    +     + S   +  L                      +
Sbjct: 150 KTTTTAMVSMIYAEAGLDPTFV-NGGLVKSAGTNAHLG----------------CSRYLI 192

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S     H    ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 193 AEADESDASFLH----LQPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGLAV 248

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD    E++                   I   +           I   G+  D L  
Sbjct: 249 LCADDEVLMELVPLVGRQVITYGFSENADYRIEDYQQTGFQGHYT-VICPNGERIDVLLN 307

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDY 362
           +PG     NA  A  +    GI +  +L  L        RF+ +G   R      +  DY
Sbjct: 308 VPGRHNALNATAALVVAKEEGIKNDAILAALADFQGAGRRFDQLGQFIRPNGKVMLVDDY 367

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNP 420
            H    + + ++  R     + IV+        + +       ++     D+ I+ D  P
Sbjct: 368 GHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ-VDVLIMLDVYP 426

Query: 421 RSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E P      + +   I + G    I   +  +      +++   D+++  G G
Sbjct: 427 AGEAPIVGADSKALCRSIRNLGKVDPILVSDTEQLGEVLDQIIQDGDLILAQGAG 481


>gi|237738134|ref|ZP_04568615.1| folylpolyglutamate synthase [Fusobacterium mortiferum ATCC 9817]
 gi|229420014|gb|EEO35061.1| folylpolyglutamate synthase [Fusobacterium mortiferum ATCC 9817]
          Length = 411

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 115/372 (30%), Gaps = 27/372 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ + GT+GK S ++ ++ I   +G    +      +    +             
Sbjct: 36  QKNYKVIHIAGTNGKGSTSTTIETILLEAGYKVGKYTSPHILKFNERIRANGQDISDEEI 95

Query: 172 KALSYLSSQ--------------GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                +  +                  +    S  GLD   L+         TN+    +
Sbjct: 96  VKYYQIVKEVIAKTGIRPTFFEVTTAMMFKYFSDLGLDYVVLETGMGGRFDATNVCEAEL 155

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                        +      + KE   II                               
Sbjct: 156 CVITNVSLDHTEYLGDTIYKIAKEKAGIIKNTSRVVVADSNPEFLKAISEEKAEIINVLE 215

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             K      + ++    ++     + F L G +Q  N L A  + I +GID  ++    +
Sbjct: 216 KYKNTTMELDFEKFITKIDLGAEKYNFSLFGNYQFKNFLTAYEVAIQLGIDKEIIKRASK 275

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQ 396
           K+     RFE      +   + +D AH  + +  + K I        +V+      D+D 
Sbjct: 276 KVVWQC-RFERY---CQNPLVVLDGAHNEDGMRELCKIIEQGYKSEEVVIITSILKDKDV 331

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                M  +   +AD  I T   +NPR  + EKI  ++     G I + N  +A   A  
Sbjct: 332 KH---MLGLMRKIADNIIFTSLEENPRGTNGEKIFEQLEDK-KGCIVENNMKKAYELAKS 387

Query: 455 MLNKQDVLVVAG 466
              K  ++VV G
Sbjct: 388 YNKK--IIVVCG 397


>gi|39936591|ref|NP_948867.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           CGA009]
 gi|48428302|sp|P61682|MURC_RHOPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39650447|emb|CAE28970.1| UDP-N-acetylmuramate-alanine ligase [Rhodopseudomonas palustris
           CGA009]
          Length = 467

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 139/421 (33%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           +GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  KGADVLVVSTAIKRDNPELLAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDA-GDLDPTVINGGIINAYGTNARLGGGDWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A  +A  R F E +P    
Sbjct: 168 -------------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDA-FRNFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEG 297
           A++  D    + ++ +  +          Q     L               +        
Sbjct: 214 AVMCIDHPVVQTLVGKIEDRRIITYGENPQADARLLDLAASGGGSTFKVAFRDRKAGTAH 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D   P+PG     NA  A  +   +G+    + + L     V  RF   G    G  
Sbjct: 274 EIADLKLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DY H    +  +LK  R  T+G++I V      R    + +  +       AD  IV
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQSTAGKVIAVV--QPHRFSRLQSLFEEFCTCFNDADAVIV 390

Query: 416 TDDNPRSEDP-EKIRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D  P  E P E I  +        HG    +   +          + +  D +V  G G
Sbjct: 391 ADVYPAGEAPIEGIDRDHFVLGLRAHGHRDVVALQDSASLAGVVAGLAHSGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|15895664|ref|NP_349013.1| folylpolyglutamate synthase [Clostridium acetobutylicum ATCC 824]
 gi|15025411|gb|AAK80353.1|AE007739_9 Folylpolyglutamate synthase [Clostridium acetobutylicum ATCC 824]
 gi|325509814|gb|ADZ21450.1| Folylpolyglutamate synthase [Clostridium acetobutylicum EA 2018]
          Length = 431

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
             GR E + +      + VD AH S+ +  + ++I       R+I++ G   D++  K  
Sbjct: 297 WKGRLEVLKS---NPLVVVDGAHNSDGILKLKESIGVHFKYKRLILILGILADKEVKK-- 351

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M ++    A   I V+  N R+ED +++   +         + +   A   AI    + 
Sbjct: 352 -MVELITKDAYKIITVSPHNNRAEDEKELCKMVKVYNNECEAEKDYKRAYEKAISYYKEG 410

Query: 460 DVLVVAG 466
           D++++ G
Sbjct: 411 DMILICG 417


>gi|312794215|ref|YP_004027138.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181355|gb|ADQ41525.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 455

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 146/404 (36%), Gaps = 36/404 (8%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V+ +A   +D    I +    L +    +FL L          +N++A++GT GK++  S
Sbjct: 64  VIYTAAISKDNPELIAAKRMNLKIYERAEFLGLLMKNF-----KNVIAISGTHGKTTTTS 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I +++  +   +   + +     +  + +   + +       S             
Sbjct: 119 MIGYILKKASYNPTIL-VGAFVKQLGGNFVIGSKEYLVVEACEYVDSFLKFN-------- 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                          G   N+  DH+DY +   +  N+  + F + +P     +   DD 
Sbjct: 170 ------------PTIGVILNIDNDHLDYFKDIDSIKNS-FKKFAQKIPTSGFLVANCDDK 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K+V+ + H     + +      F         + +  V  + +         +PG   
Sbjct: 217 NVKDVISKLHTQVVCISTKEKADIFAGNISCNDGYYEFDVKNNNDEILAHIKLNIPGFHN 276

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           VYN+L A  +   +G++S  + + L +      R E VG    G  +Y DYAH    ++ 
Sbjct: 277 VYNSLAAFAVASKLGVESITIEQALSEFCGASRRLEKVG-EFDGIYLYDDYAHHPTEIKA 335

Query: 372 ILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED------ 424
            L  ++ ++ G++  +F      R +       + +L  AD  IVTD     E       
Sbjct: 336 TLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAE-SLKWADKVIVTDVYAAREKNTFGIT 394

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            EK+  ++           N  +     ++   K D++   G G
Sbjct: 395 SEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKGDIIATIGAG 438


>gi|153938318|ref|YP_001392439.1| FolC bifunctional protein [Clostridium botulinum F str. Langeland]
 gi|152934214|gb|ABS39712.1| FolC bifunctional protein [Clostridium botulinum F str. Langeland]
 gi|295320425|gb|ADG00803.1| FolC bifunctional protein [Clostridium botulinum F str. 230613]
          Length = 429

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 114/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +  + + SG                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISAVLKESGYKVGMYTSPYIEEFEERIQINGHNITKEDLGYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    +        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEEITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CDLIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKLGIKIEKIHIISALKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E  +++   ++     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVAPHNDRGESSKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A       D++++ G
Sbjct: 389 CEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|254246418|ref|ZP_04939739.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
 gi|124871194|gb|EAY62910.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
          Length = 465

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 81/433 (18%), Positives = 130/433 (30%), Gaps = 60/433 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGK 112
           GH      I  GA A+VVS+A      +  A  R   PI+     R   L+       G 
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRQGVPIVQ----RAVMLAELMRLKQG- 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I   
Sbjct: 108 -----IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAE 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S  S                       +  +    TN+  DH+D +    A      
Sbjct: 161 ADESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAF 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F + LP    A++  DD   ++++        R                         
Sbjct: 201 IEFTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFT 259

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I         +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G 
Sbjct: 260 VIREGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGD 319

Query: 352 NSR----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                     +  DY H    +   +   R    GR  +V      R    R        
Sbjct: 320 VPSADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVN 378

Query: 408 DLA--DIAIVTDDNPRSED--PEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEM 455
            L+  D  ++T+     E   P      +   +               +  +A+      
Sbjct: 379 VLSTVDALVLTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKV--- 435

Query: 456 LNKQDVLVVAGKG 468
               DV++  G G
Sbjct: 436 AQNGDVVITMGAG 448


>gi|295695332|ref|YP_003588570.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
 gi|295410934|gb|ADG05426.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
          Length = 466

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 88/441 (19%), Positives = 151/441 (34%), Gaps = 57/441 (12%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDN 97
           ++ G + +AI      GH    Q    GA+ +V SSA S  +       R    IL    
Sbjct: 47  VRRGAV-IAI------GHR-ANQV--DGADCVVYSSAVSPDNPELVEARRRGVRILHRS- 95

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
             + L+           +  +AV G  GK++ +S +  +  ++GL    I     + S  
Sbjct: 96  --ELLAEILQA------KKGIAVAGAHGKTTTSSMIAFVMNQAGLDPTYI--VGGVISNL 145

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +N      P  +A+A     +    H  V                      TN+  DH+
Sbjct: 146 GENAKAGLGPYAVAEADESDGTFLNYHPYVAV-------------------VTNIEPDHL 186

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           + +  +        + F   + +   A++ ADD     +  +                  
Sbjct: 187 ENYGGKFENLRGAYKRFLGQVREGGLAVLCADDPELSNLGSQLAGRTVWYGFSSGADWTA 246

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +   H++ +V    E    D    +PG   + +AL A  +C   GI  + + E L 
Sbjct: 247 QDVDLHDGHSRCRVFYRREH-VGDLTLSVPGRHNISDALAAIAVCREAGIPFSTIAEILS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                  RF+ +  +  G  I  DYAH    +E  L   RT T  RI+ VF         
Sbjct: 306 SFRGAKRRFQQIA-DVAGVLIVDDYAHHPTEIEATLAAART-TGRRIVAVFQPQRYTRTH 363

Query: 398 KRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRI---------E 447
                   A   AD  I+TD  +P  E  +KI       +   I + +           +
Sbjct: 364 FLLDQFSYAFKDADEVIITDIYSPVGE--QKIAGVSAERLAQLIRERSNERVWFLRQKQD 421

Query: 448 AIRTAIEMLNKQDVLVVAGKG 468
            I   +  ++  D+++  G G
Sbjct: 422 VINDLLSRVHPGDLVLFMGAG 442


>gi|295111742|emb|CBL28492.1| UDP-N-acetylmuramate--alanine ligase [Synergistetes bacterium SGP1]
          Length = 497

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 83/270 (30%), Gaps = 12/270 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D+  + +    A  R            +  A+D  ++ +++       R 
Sbjct: 182 IVTNVDWDHVDHFPSFEDVILAFARFASGRKEGAPLIV-CAEDEGAQRMLEGLRGPLLRY 240

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                           A                     + GE  V NAL A      +G+
Sbjct: 241 GWGRSWDWGAFDLVPRATGGISCSVCRKGKVLGPLELSVSGEHNVLNALAALAAADVLGV 300

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                   L+  H    R +  GT   G  +  DYAH    +   L  +R I   R I++
Sbjct: 301 PFEKAAATLKDFHGAARRLQTKGTLG-GVTVIDDYAHHPTEIAATLSALRGIYPNRRILL 359

Query: 388 FGCGGDRDQGKRPIMGK---IALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGF 439
                     +   + +    AL  AD  ++       E P     E I   +       
Sbjct: 360 LYQPHR--YTRTAALVEPLTAALSGADEILLLPIYSAGEPPQQVSAEAIVERLRRAGKRI 417

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               +  +A+R    +    D+L+  G G+
Sbjct: 418 AFCRDEDDALRAVRALSQDGDLLLTMGAGN 447


>gi|297559874|ref|YP_003678848.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844322|gb|ADH66342.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 486

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/294 (21%), Positives = 106/294 (36%), Gaps = 35/294 (11%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       TN+  DH+D +   +            +   E   ++  DD  ++ V + A
Sbjct: 180 MLSPKIAVVTNVEADHLDNYSGIEEI---HANFASFVDRVERTLVVGVDDPGARRVAELA 236

Query: 261 HNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVA 318
              G RVL+ G  +     + +V A     + TI     +  D    +PG   V NA  A
Sbjct: 237 RERGKRVLTYGEAEDADYRVTRVRARGFTTEFTIRTANGEPVDGQLAVPGRHNVLNAAAA 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR- 377
             +   +G D  + +E +        RFE  G  + G  +Y  YAH    +E  L+  R 
Sbjct: 297 VAVADELGHDLEVAVEGIADFAGAARRFEPKG-EAGGVAVYDSYAHHPTEIEADLRATRA 355

Query: 378 --------------TITSGRIIVVFGCGGDRDQGKRPIMGK---IALDLADIAIVTDDNP 420
                             GR++ +F         +  I  +    AL LAD  +VT+   
Sbjct: 356 ALESLAEEAREDGREHAGGRVVALFQPHL---YSRTRIFAEEFAAALGLADEVVVTEVYA 412

Query: 421 RSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             EDPE       I + + H          R +A+    E+    D+++  G G
Sbjct: 413 AREDPEPGVTAELITSRVAH--DRVWYVPGRDDAVLRVAELAGPGDIVLTMGAG 464


>gi|148381111|ref|YP_001255652.1| FolC bifunctional protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931511|ref|YP_001385485.1| FolC bifunctional protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937356|ref|YP_001388891.1| FolC bifunctional protein [Clostridium botulinum A str. Hall]
 gi|148290595|emb|CAL84724.1| putative folylpolyglutamate synthase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927555|gb|ABS33055.1| FolC bifunctional protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933270|gb|ABS38769.1| FolC bifunctional protein [Clostridium botulinum A str. Hall]
          Length = 429

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 113/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +  + + SG                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISAVLKESGYKVGMYTSPYIEEFEERIQINGHNITKEDLGYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K             K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEEITYEKAGIIKKAPVITYPQKKEVEKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CELIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKLGIKIEKIHIISALKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E  +++   ++     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVAPHNDRGESSKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A       D++++ G
Sbjct: 389 CEHLEDYKECYDKAKFYCEDGDMILICG 416


>gi|282880606|ref|ZP_06289312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305501|gb|EFA97555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 443

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 114/352 (32%), Gaps = 39/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G  +   G                   + L    
Sbjct: 102 SKMICITGSNGKTTTTSLIYHIFKAAGYDAGLAGNIGR--------------SLALQV-- 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SS  LD   +   K       N+  DH+D +      +       
Sbjct: 146 ---AEDPHEYYIIELSSFQLD--NMYKFKADIAILLNITPDHLDRYDNCMQNYVDAKMRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   ++   I + DD   K  +++      +      + K          +  ++ T  
Sbjct: 201 IQNQTEKDSFIYWNDDPIIKRELQKYDIKAVQCPFSELKEKGSIGYIEEGQYTIEKPT-- 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  VYN+L A       GI + ++ + L     V  R E V     
Sbjct: 259 -PFNMEQEALSLTGKHNVYNSLAAGIATDIAGIRNDVIRKSLSDFSGVEHRLEKVCKVGG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLADI 412
              I    A   ++    L+++ T T           G +D+G    + K  +      +
Sbjct: 318 VEYINDSKATNVDACWYALESMNTPT-------VLILGGKDKGNDYQLIKELVKKKCVGL 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN +  +          GIP   +  +  E +    EM    D +++
Sbjct: 371 VYLGADNTKLHNNFDSL-----GIP-VRDTHSMKECVEACYEMARPGDTVLL 416


>gi|163752979|ref|ZP_02160103.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
 gi|161326711|gb|EDP98036.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
          Length = 446

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 111/353 (31%), Gaps = 38/353 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I+ +TG++GK++       + +   L+    G                         
Sbjct: 103 DAMIVGITGSNGKTTTTMLTHHVLKEGELNVGVAGNMGDS-------------------F 143

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++ Q      +E SS  LD   +   K      TN+  DH+D +  +   + A    
Sbjct: 144 AKQVAEQSYDTYVLELSSFQLD--GIIDFKPRIAIITNITPDHLDRYDYKFENYIASKFR 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 K+   I  ADD      MK+                    +L+    I   Q  
Sbjct: 202 IAMNQTKDDYLIYDADDEVVTNWMKKHPVKSTLIPFSLKNKLENGAYLENENIILTIQNK 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           TI++                V NA+ A+ +   + I    + E +     V  R E V  
Sbjct: 262 TITMPTDSLALEGKH----NVKNAMAASAVAQLLNIRKQTIRESMSGFQGVEHRLEKVLK 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 I    A     +      + ++T+  + +V G   D+      ++  +   +  
Sbjct: 318 IQNVQYINDSKATN---INATYYALESMTTQTVWIVGGV--DKGNDYSDLLPLVHEKVKA 372

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I  +  DN       KI           +E  +  EA++ A ++  K D +++
Sbjct: 373 IICLGVDNS------KIIESFGRVADLMVETTSMEEAVKIAHKIAEKGDNVLL 419


>gi|163794528|ref|ZP_02188499.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium BAL199]
 gi|159180252|gb|EDP64775.1| UDP-N-acetylmuramate--alanine ligase [alpha proteobacterium BAL199]
          Length = 475

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 79/429 (18%), Positives = 142/429 (33%), Gaps = 50/429 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A +    A  +VVS+A    +       +  + +V    + L            + 
Sbjct: 57  FVGHAASNVDDASILVVSTAIKGDNPELAAARSRMLPIVHRA-EMLGELMRL------KW 109

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  +   +GL    I     I++   + RL           +  
Sbjct: 110 SIAVAGTHGKTTTTSLISTVLDGAGLD-PTIINGGIINAIGTNARLGAGD-----WMVVE 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + V + A+                   TN+  +H+D+H T +    A    F +
Sbjct: 164 SDESDGSFVKLPAT---------------IAVVTNIDPEHLDFHGTFENLQKA-FESFVQ 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P    A +  D    + ++ +  +          Q     +         +   I  +
Sbjct: 208 NIPFYGFAAMCLDHPTVQTLIPKVSDRRIVTYGFSPQADVRGVDVEITPAGSRFTAIITD 267

Query: 297 GKDFDFLF------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                         P+ G+  V NAL A  +   +G+    V+  L+    V  RF   G
Sbjct: 268 RAHGTERRLENVLLPMYGQHNVQNALAAMAVASEMGLPDDRVVASLQGFGGVKRRFTKTG 327

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             + G  +  DY H    +  +L   R+ +  GR+I V      R    R +        
Sbjct: 328 -EAGGITVIDDYGHHPVEISAVLLAARSASGAGRVIAVV--QPHRYTRLRDLFEDFCTCF 384

Query: 410 --ADIAIVTDDNPRSEDPEK-IRAEII------HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             AD  IV D  P  E P   I  + +       G       G+ +E     ++     D
Sbjct: 385 NDADAVIVADVYPAGEAPIAGIDRDALVEGLRARGHRRVQPLGDPVELAARVLDFAKDGD 444

Query: 461 VLVVAGKGH 469
           ++V  G G+
Sbjct: 445 MVVCLGAGN 453


>gi|254411000|ref|ZP_05024778.1| UDP-N-acetylmuramate--alanine ligase [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182355|gb|EDX77341.1| UDP-N-acetylmuramate--alanine ligase [Microcoleus chthonoplastes
           PCC 7420]
          Length = 512

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 125/416 (30%), Gaps = 51/416 (12%)

Query: 71  IVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ SSA +  +  + A +    PI    +    L               +AV GT GK++
Sbjct: 115 VICSSAINPINSEYKAAVEGGYPIFHRSDLLAAL---------MQDYRSIAVAGTHGKTT 165

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL                      P+ +   +  ++  +  +      
Sbjct: 166 TSSLMGYLLLKTGLD---------------------PTIVVGGEVDAWQGNARLGKSPFL 204

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D++Q             +             
Sbjct: 205 VAEADESDGSLAKLAPEIGVITNIELDHPDHYQNLDQVIETFKIFADRCQTIVGCI---- 260

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                + +           L       +   + V             +         L G
Sbjct: 261 ---DCQTLRSHFTPTISYSLQRTAGADYSVDRIVYQAEGITARIWEGDQVLGTLQLSLLG 317

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL    +   +G++   +   L        RFE  G   +G     DYAH  + 
Sbjct: 318 QHNLSNALAVVAVGRHLGLEFDAIASALATFEGAKRRFEVRG-ECKGITFVDDYAHHPSE 376

Query: 369 LEMILKNIRTITS--GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE-- 423
           ++  L   R       RI+ +F      R         K   D AD+ +VTD     E  
Sbjct: 377 IQATLAAARLQVELSRRIVAIFQPHRYSRTLTFLSDFAKSFGD-ADLVVVTDIYSAGEAG 435

Query: 424 ----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                 E++RA I         +    E  +   ++L   D+ +  G G+    I+
Sbjct: 436 VGQITGEQVRAAIADHHERVYYQPTLDEVSQLLAQILQPGDLAIFLGAGNLN-QII 490


>gi|168213417|ref|ZP_02639042.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
 gi|170715048|gb|EDT27230.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
          Length = 457

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 122/405 (30%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I++    L++ +  +FL            +  +AV GT GK++  
Sbjct: 72  VVVYTAAIPSDNPEIIKAKEDNLILMDRAEFLGQIMKGH-----KFNVAVAGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +     LS+                         L             +   EA 
Sbjct: 127 SMISHVA----LSADLDPTILVGG--------------DLDIIHGNFRVGNSEYFITEAC 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            +     R        G   N+  DH+D+++      +   +    +            D
Sbjct: 169 EYKQSFLR---FFPYVGIILNIDADHLDFYKDINHIKDTFKQFVRLIPNDGYIIG--NAD 223

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +            +          +              E K       +PG  
Sbjct: 224 DEKVMEVLEVAKCNVLTYGINNGDIQARNIEFNEKGCATFDVFRNEEKLLSLSLNVPGMH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L A  L     I++  ++  L        RFE+ GT +    +  DYAH    ++
Sbjct: 284 NVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYKGTKN-DITVIDDYAHHPVEIK 342

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   +I+ VF      R +       K   D  D  ++ D     E D  +I
Sbjct: 343 ATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVK-CFDDCDELVLMDIYAAREKDLGEI 401

Query: 429 RAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++     I           +  EA+      L+K D+L+  G G
Sbjct: 402 NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKGDLLLTVGAG 446


>gi|121611886|ref|YP_999693.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121556526|gb|ABM60675.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 890

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 121/372 (32%), Gaps = 27/372 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ A  + Q+    GL     G T+T   +    ++ +        A + L
Sbjct: 500 VAVTGTNGKTTTARLIAQLFTAQGLRV---GMTNTDGVYVNGRQIDSGDCSGPKSARNVL 556

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
               V     E +  G+ +  L   +      TN+G        + T         R+  
Sbjct: 557 LHPEVDAAVFETARGGILREGLGFDRCQVAVVTNIGTGDHLGLNYITTVQDLAVLKRVIV 616

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH----------NAGCRVLSVGYQGKFIHLKKVCAI 285
           + +     A++ A D     +               +    V       + +++   C +
Sbjct: 617 QNVAPGGYAVLNAADPIVAAMAPACPGKVIYFAGGRHHPVMVTHRAQGHRTVYVDGDCIV 676

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            ++     ++  +D          FQV N + A      +G+    +   L         
Sbjct: 677 ASEGSWRETIHLRDVPVTRNGTIAFQVDNVMAAVAAAWGVGLPWQTLRRGLSGFVNDSDN 736

Query: 346 F--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKRP 400
               F   + RG  +  DY H  +++  +   +  I +    R  VV    GDR      
Sbjct: 737 APGRFNIMDYRGATLIADYGHNPDAMRALASAVEAIDAASGKRRSVVISAAGDRRDEDIR 796

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAI 453
               I     D  I+  D   R     ++ A +  G+          E      AI TA+
Sbjct: 797 QQSAILGAAFDEVILYQDAAQRGRSDGEVMALLRQGLIGAARARHIEEIHGEFNAIDTAL 856

Query: 454 EMLNKQDVLVVA 465
             L   D+ +V 
Sbjct: 857 ARLQPGDLCLVL 868


>gi|225017206|ref|ZP_03706398.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
 gi|224949981|gb|EEG31190.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
          Length = 457

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 129/411 (31%), Gaps = 49/411 (11%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVT 121
           +GA+ IV ++A      +  A  +S  P +   V      L L   R         + V+
Sbjct: 70  KGADLIVYTAAIMEDNPELIAAKQSGIPTIERCV-----LLGLITERYSD-----CICVS 119

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S + QI   +G     +                      +    +      
Sbjct: 120 GTHGKTTTTSMLTQILLDAGKDPSAV----IGGKLKSIEGYGRSGSSEVMVCEACEFVDT 175

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             H                 +        N+ RDH+DY +T +    +  +   +     
Sbjct: 176 FLH-----------------LSPDIAVVLNIDRDHMDYFKTMENLKLSFEKFCRKATKC- 217

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +   DDA S EV  R                +    +     +     +    +   
Sbjct: 218 --ILYNGDDANSAEVAGRVDQRKVTFGFSDQNDYYPANVQHVDGLHTTFDLMHKGERLTS 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG+  + NA  A    +  G+    + E L        RFE +G    G  I  D
Sbjct: 276 LNLFVPGDHNILNATAACAAALETGVRPEQLAEGLGNFKGAGRRFELLG-KINGITIVDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTD 417
           YAH    +++ L+  +++   ++  V           R  M       AL +AD  ++++
Sbjct: 335 YAHHPAEIKVTLQAAQSLNFNKVWAVHQPF----TYSRTAMLLDDFAEALSIADQVVLSE 390

Query: 418 D-NPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               R ++   I   ++   I G +      E     +      D++V  G
Sbjct: 391 IMGSREKNTYGIYAKDLADKIDGCVWFPTFEEISDYVLSHAEPGDLVVTLG 441


>gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
 gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
          Length = 450

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 140/427 (32%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         +  G + +       L D    +    P +   N    K L+   
Sbjct: 38  NDGKPFEENPAAQSLLEDGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++   +G      G     +S  
Sbjct: 98  QVLTEVELAYLISDAP---IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                               ++     + +E SS  L    +          TNL   HI
Sbjct: 155 ------------------AQTATAKDTLVMELSSFQL--MGVQEFHPEIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  AK  +  ++   +   + +  D     + K   +     +      + +
Sbjct: 195 DYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQD-----LAKELASKTQATVVPFSTQEKV 249

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +       +  + +   +      +PG   V NAL A  +    G+D+  + E L 
Sbjct: 250 DGAYLEDGQLCFRGEVVMAASEI----GVPGSHNVENALAAIAVAKLRGVDNQTIKETLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FV             +     +    K +    + ++I++   G DR   
Sbjct: 306 AFGGVKHRLQFVDEIQGVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I   L  + I+       +  E+++         +++  +  +A R A E+  
Sbjct: 362 FDELVPDITG-LKKMVIL------GQSAERVKRAAEKAGVTYVDATDIADATRKAYELAT 414

Query: 458 KQDVLVV 464
           + DV+++
Sbjct: 415 QGDVVLL 421


>gi|268318029|ref|YP_003291748.1| Mur ligase middle domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262335563|gb|ACY49360.1| Mur ligase middle domain protein [Rhodothermus marinus DSM 4252]
          Length = 538

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/378 (18%), Positives = 119/378 (31%), Gaps = 41/378 (10%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           RK     A+         I+ +TG+ GK+S    + +I           G          
Sbjct: 177 RKARRKLAA----HPNLTIIGITGSYGKTSTKFIIAEILSLRYQVLATPGS--------- 223

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                TP  I             V  + +     G  +      +   G  T +G  H++
Sbjct: 224 ---YNTPMGICKVINEQLRPEHQVLVLEMGIRHPGDIRELCAIARPDIGVVTAVGPMHLE 280

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              + +A    K  L     P     +  ADD     + +RA     RV   G     + 
Sbjct: 281 TMGSIEAIAREKSELVACTRPGGPVVL-NADDPRVAAMAERARGPVWRVSVEGNPEADLV 339

Query: 279 LKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            + +       +  +  E   +  F   L G   V N L+A  +    G+    +   + 
Sbjct: 340 ARDITYGPEGTRFVVRDETGTEQVFQTRLLGRHNVLNILLALAVGRIFGLRLRQMAHAVA 399

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL--KNIRTITSGRIIVV---FGCGG 392
           +L  V  R +       G    +D A  SN +      + +    +GR IVV       G
Sbjct: 400 RLRPVEHRLQLRRE---GPITVIDDAFNSNPVGARNALEILGQFRTGRRIVVTPGMVELG 456

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI------ 446
            R+  +   +G+      D+A++    PR   P      I  G+       +RI      
Sbjct: 457 AREAEENRALGRFMAQHVDLAVL--IGPRRTLP------IQEGLREAGFPEDRIHVFRSL 508

Query: 447 -EAIRTAIEMLNKQDVLV 463
            EA       L   DV++
Sbjct: 509 FEAQDFLKTYLQPGDVVL 526


>gi|33597711|ref|NP_885354.1| cyanphycin synthetase [Bordetella parapertussis 12822]
 gi|33574139|emb|CAE38469.1| cyanphycin synthetase [Bordetella parapertussis]
          Length = 857

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 131/384 (34%), Gaps = 30/384 (7%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA R  G+ P  ++AV GT+GK++       I   +G      G T++   +    R+ T
Sbjct: 462 FAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAGHRV---GMTNSDGVYVGKQRIDT 516

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQT 222
                   A   L    V    +E +  G+ +  L   +      TN+G        + +
Sbjct: 517 GDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHLGLGYIS 576

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----------NAGCRVLSVGY 272
                    R+  + +  +  A++ A D    E+               N          
Sbjct: 577 TVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRAQ 636

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + ++      +  +    ++    D          FQV N + A     A+GID   +
Sbjct: 637 GHRVVYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWDTI 696

Query: 333 LEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              L          PGRF     + RG  +  DY H  ++++ +++ I T+ + R  VV 
Sbjct: 697 RHALAIFVNDAQTAPGRFNV--FDFRGATLIADYGHNPDAIQALVRAIDTMPARRRSVVI 754

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG------FIE 441
              GDR         +I     D  I+  D   R     ++ A +  G+          E
Sbjct: 755 SGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHIDE 814

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVA 465
                 AI  A++ L   D+ ++ 
Sbjct: 815 IQGEFVAIDAALQRLAPGDLCLIL 838


>gi|85711824|ref|ZP_01042880.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Idiomarina baltica OS145]
 gi|85694439|gb|EAQ32381.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Idiomarina baltica OS145]
          Length = 443

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 119/363 (32%), Gaps = 35/363 (9%)

Query: 106 ASRLYGKH--PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           A  L+        +LAV+GT GK++ AS +  I Q +G     +       +F     L 
Sbjct: 92  AQWLHDNVLGQRWVLAVSGTHGKTTTASMLTWILQANGYQPGFL-IGGVPGNFNVSAALG 150

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 +       +        V  S + L                NL  DH D   T 
Sbjct: 151 ESDFFIIEADEYDTAFFDKRSKFVHYSPNTL-------------VINNLEFDHADIFDTL 197

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                    L   +       I    DA  + + K   +   RV    +         + 
Sbjct: 198 ADIQKQFAHLLRIVPGNGQVIIPDQVDAIEQVITKGCWSDVVRVGKDWHYHANSADASL- 256

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +  +  +     PL G   ++NA++A      +G+      E L       
Sbjct: 257 -------FNLRRDDNEVAVKLPLVGTHNMHNAVMAMIAAFHVGVLPQQAAEALATFKAPK 309

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPI 401
            R E +    RG +++ D+AH   +++  +  ++   +GR++V+     +  +    +  
Sbjct: 310 RRLELL-LEYRGIKVFDDFAHHPTAIKTTVDALKKSETGRLVVLLEPRSNTMKSGVHKDA 368

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +     D   I I          PE I  +I   +P     G+    ++ AI+ L   D 
Sbjct: 369 LANALADADSINIF--------APESIEWDIASAVPNARVFGDTEAMLQHAIDDLVPGDT 420

Query: 462 LVV 464
           +V+
Sbjct: 421 VVI 423


>gi|225027259|ref|ZP_03716451.1| hypothetical protein EUBHAL_01515 [Eubacterium hallii DSM 3353]
 gi|224955412|gb|EEG36621.1| hypothetical protein EUBHAL_01515 [Eubacterium hallii DSM 3353]
          Length = 435

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 9/146 (6%)

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              ++     +      + PGR E +         Y D AH  +    +   ++   + +
Sbjct: 284 LDTMNIKAAQQGGIIRTIWPGRLEVLKKEPL---FYRDGAHNPDGARKLASFLQKHFTNK 340

Query: 384 IIV-VFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIP-GFI 440
            I+ + G   D++  K   + +  + +A    V   +N R    E +   I        +
Sbjct: 341 RIIYIMGVLKDKEYTK---ILQYLMPMAKKVYVFRPNNERGLSAEILANTIKEKADVPVM 397

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + +   A+  A+E    +D+LV  G
Sbjct: 398 IEPDVNTAVSKALEAAQPEDILVACG 423


>gi|33602560|ref|NP_890120.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
 gi|33576999|emb|CAE34079.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
          Length = 857

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 131/384 (34%), Gaps = 30/384 (7%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           FA R  G+ P  ++AV GT+GK++       I   +G      G T++   +    R+ T
Sbjct: 462 FAERDDGRIP--VVAVAGTNGKTTTVRLTAHILDCAGHRV---GMTNSDGVYVGKQRIDT 516

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQT 222
                   A   L    V    +E +  G+ +  L   +      TN+G        + +
Sbjct: 517 GDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAIVTNIGMGDHLGLGYIS 576

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH----------NAGCRVLSVGY 272
                    R+  + +  +  A++ A D    E+               N          
Sbjct: 577 TVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRAQ 636

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + ++      +  +    ++    D          FQV N + A     A+GID   +
Sbjct: 637 GHRVVYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWDTI 696

Query: 333 LEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              L          PGRF     + RG  +  DY H  ++++ +++ I T+ + R  VV 
Sbjct: 697 RHALAIFVNDAQTAPGRFNV--FDFRGATLIADYGHNPDAIQALVRAIDTMPARRRSVVI 754

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG------FIE 441
              GDR         +I     D  I+  D   R     ++ A +  G+          E
Sbjct: 755 SGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHIDE 814

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVA 465
                 AI  A++ L   D+ ++ 
Sbjct: 815 IQGEFVAIDAALQRLAPGDLCLIL 838


>gi|113866801|ref|YP_725290.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525577|emb|CAJ91922.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 877

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 14/163 (8%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           N L A     A+GI + L+   +         VPGRF        G  + VD AH + +L
Sbjct: 692 NVLAAVAAGWALGISNDLIRAGVVTFDVGQVDVPGRFTL--FERNGATVVVDDAHNAPAL 749

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN------PRSE 423
           E +   +    + R +VV+G G  R        G       D   + +D       P +E
Sbjct: 750 EALATALERFPAERRMVVYGAGMQRRDEDLVRQGMALGQHFDRVFLCEDRSVKRALPDAE 809

Query: 424 DPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               ++  +  G  +   I++G R  AI TA+  L   D+LV+
Sbjct: 810 ARALLKQGLYEGRRVTKIIDEGTRASAIETALSQLVPGDLLVL 852


>gi|254292770|ref|YP_003058793.1| UDP-N-acetylmuramate--L-alanine ligase [Hirschia baltica ATCC
           49814]
 gi|254041301|gb|ACT58096.1| UDP-N-acetylmuramate/alanine ligase [Hirschia baltica ATCC 49814]
          Length = 474

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 139/452 (30%), Gaps = 62/452 (13%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R  + G  IF+        GH         GA  I  +      +  A   +  P++   
Sbjct: 49  RLRKKGARIFI--------GHE-AENVANAGAVIISSAIKAGNPEVDAARAAGIPVVRRA 99

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           N    L            +  + V GT GK++  + V  +   + +    I     ++++
Sbjct: 100 NMLAELVRM---------KWTVCVAGTHGKTTTTTMVSSLLDAADIDPTVI-NGGIVNAY 149

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             + +      + L    S                          +   A   TN+  +H
Sbjct: 150 GSNAKAGAGDWMVLEADESD--------------------GTFTKLSPTAAIVTNIDPEH 189

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ++++ + +    A    F E +P    A++  D    + +  R  +          Q   
Sbjct: 190 MEHYGSMENLR-AAFDTFVENIPFYGFAVLCTDHPEVQALASRIVDRRRITYGFNRQADV 248

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGIDSA 330
             +     +                         P+ G+  V NAL A  + + +G    
Sbjct: 249 RAVNLRTDLKGAHFDIALRRPGSATPRMIKGATLPMAGDHNVQNALAAVTVALELGASDD 308

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSR-----GGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +L  L     V  RF   G           RI  DY H    +E +LK  R++  G+  
Sbjct: 309 QILAGLSGFGGVKRRFTPAGEWEIEAGKEPVRIIDDYGHHPVEIEAVLKAARSMQ-GQGG 367

Query: 386 VVFGCGGDRDQGKRPIMGK--IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIP 437
           V+      R      +  +     D+ADI ++       E P      E +   I     
Sbjct: 368 VIAVAQPHRYSRLNDLFSEFSTCFDMADIVLIPPVYEAGETPIEGINHETLVKSIRQHGH 427

Query: 438 GFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             +     +EA+  AI+      D++V  G G
Sbjct: 428 KDVGILESLEALPEAIKAYAKPGDMVVCLGAG 459


>gi|239917863|ref|YP_002957421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
 gi|239839070|gb|ACS30867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 531

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 138/418 (33%), Gaps = 51/418 (12%)

Query: 67  GAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA A  +V S  +              + +  +    L+       G+   + + +TGT+
Sbjct: 103 GAAADLVVTSPGWRPDQPLLMAAHAAGLPIWSDVE--LAWRLRERAGRKTADWVCLTGTN 160

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V+ I +  G  +   G   T                      +    QG   
Sbjct: 161 GKTTTVTMVEAILRADGRRAVACGNVGTP------------------VLDAIRDPQGFDV 202

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +++E SS  L      G+   + +  NL  DH+D+H + + Y  AK +++          
Sbjct: 203 LALELSSFQLHW--THGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVYANTRVACVF- 259

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                D  ++ +++RA        ++G+      L  +  +         ++ +  + + 
Sbjct: 260 --NEQDPLTRTLVERADVQEG-CRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEAIA 316

Query: 305 --------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P+     + NA  AA L  A+G+  A V E L        R + V T+    
Sbjct: 317 LAERADLGPVAPRHTMANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRDIM 376

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   ++ +  L    +      +V    G  +      ++   A  L  + ++ 
Sbjct: 377 WVNDSKATNPHAADASLAAFSS------VVWLAGGLPKGVTYHELVAAHAHRLRAVVLLG 430

Query: 417 DDNPRS---------EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D             + P         G           EA+R A  +    D +++A
Sbjct: 431 RDTSALRAALAAHAPDVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVLMA 488


>gi|194288896|ref|YP_002004803.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222731|emb|CAQ68734.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 877

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 14/167 (8%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHT 365
           FQ+ N L A     A+GI + L+   +         VPGRF        G  + VD AH 
Sbjct: 688 FQIENVLAAVAAGWALGISNDLIRAGVVTFDVGQVDVPGRFTL--FERNGATVVVDDAHN 745

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN------ 419
           + +LE +   +    + R +VV+G G  R        GK+     D   + +D       
Sbjct: 746 APALEALATALERFPAERRMVVYGAGVQRRDQDLVRQGKVLGQHFDRVFLCEDRSVKRAL 805

Query: 420 PRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P +E    ++  +  G  +   I++G R  AI  A+  L   D+LV+
Sbjct: 806 PDAEARALLKQGLYEGRRVTKIIDEGTRASAIEAALSQLVPGDLLVL 852


>gi|282880603|ref|ZP_06289309.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305498|gb|EFA97552.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 457

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 110/363 (30%), Gaps = 42/363 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L   GT GK++ ++    I  +S +         + +  +      T   I +    
Sbjct: 112 HRGLCFAGTHGKTTTSTMCAHIMHQSHVDCNAFLGGISKNYGSNYILSDTSDYIVIEADE 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S                       ++      T+   DH+D + T++AY  +     
Sbjct: 172 FDRSFHW--------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             + P  +  I    +      M+   N   RV      G   H + +   +        
Sbjct: 212 TLIKPGGALIIHEGLE------MQEDVNNEVRVFRYSLNGGDFHAENIKIENGTITFDFI 265

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++        P    V NA+ A  +    G  +  +   +     V  RF+F   N+
Sbjct: 266 SPIENVTQVELGHPIPINVENAVAAMAMAQLNGCTAEELRYGMSTYKGVDRRFDF-KVNN 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLAD 411
                  DYAH    +    K++R +   R +          R +       +    L D
Sbjct: 325 ERHVFLSDYAHHPKEIYQSAKSLRELYHDRHVTAIFQPHLYTRTRDFYKEFAEALSQL-D 383

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+ D  P  E P        I  E+       I K + I+ ++         DVLVV 
Sbjct: 384 EVILCDIYPAREAPIPGVTSALIYNELTCKEKSMIHKEDVIDLVKK-----RDFDVLVVL 438

Query: 466 GKG 468
           G G
Sbjct: 439 GAG 441


>gi|309774771|ref|ZP_07669793.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917456|gb|EFP63174.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 523

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 127/379 (33%), Gaps = 39/379 (10%)

Query: 98  TRKFLSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
            R   +  A RL  +H   +I+ +TG+ GK+SV + + ++      +    G  +     
Sbjct: 162 IRNHYASDAQRLLQEHGDLSIIGITGSYGKTSVKTILNELLSGVYYTLMTPGSYNNQMG- 220

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                      I L           V    + A         +  +K   G  T++G  H
Sbjct: 221 -----------ITLTIRTKLQHLHEVFLCEMGADHVREIHDLMQFVKPRYGVVTSVGPQH 269

Query: 217 IDYHQTQQAYFNAKMRLFEE-LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
           +    +     + KM++ E   L              S  +  + H     V    ++  
Sbjct: 270 LATFGSMDNILHEKMQMIECLPLDGIGFVNRDNAYIQSYTIKNKCH----IVWFGMHESA 325

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                 +         T++ E ++  F   L G+  V N   A  +   +GI   ++   
Sbjct: 326 DYRCSNIRYSEEGTSFTVTAENQEHSFHTRLLGKHNVVNITCAIAVAHTLGISWEIMALA 385

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGD 393
           +EKL  V  R +   +      +   Y          L+ I+ +   R I+   F   G+
Sbjct: 386 VEKLPYVEHRLQVRKSFC--TLLDDAYNSNPEGARCALEVIKQMKHKRFIITPGFLELGE 443

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-RAEIIHGI-------PGFIEKGNR 445
           + + ++  +G+   D  D+A++           +I    I+ G+              + 
Sbjct: 444 KQEEEQYTLGQEIADSVDVALL---------VGRIQTKSIVKGLQARQFPAQNIYICDSF 494

Query: 446 IEAIRTAIEMLNKQDVLVV 464
            EA+    +  + QD +++
Sbjct: 495 QEALSIVQKQADPQDCVLL 513


>gi|193213696|ref|YP_001999649.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobaculum parvum NCIB
           8327]
 gi|229486480|sp|B3QLW3|MURC_CHLP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193087173|gb|ACF12449.1| UDP-N-acetylmuramate/alanine ligase [Chlorobaculum parvum NCIB
           8327]
          Length = 471

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 83/286 (29%), Gaps = 15/286 (5%)

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  R         +  N                      F   +P     I   D    +
Sbjct: 165 EYDRAFLKLTPTIAVVNSLESEHMDTYGTMDNLRDSFAAFANKVPFYGRVICCVDWPEIR 224

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVY 313
            ++ R +                    + A       T+   G+ +      +PG   V 
Sbjct: 225 SLISRLNRRYTTFGIEEPADVM--ASDLEACEGGSVFTVEAFGESYPGVRLGVPGRHNVL 282

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  + + IG+    ++  L     +  RF+       G  +  DYAH  + ++  +
Sbjct: 283 NALAAFSVGLEIGLPPEKIIAGLGAYTGMRRRFQMKFKGGNGLLVVDDYAHHPSEVKATV 342

Query: 374 KNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNP---RSEDPEKI 428
           K  R      RI+ VF      R        G      AD   V    P   R+ED   +
Sbjct: 343 KAARHGWKEHRIVAVFQPHLYSRTSEFAVEFGWALSR-ADAIYVAGIYPSRERTEDFPGV 401

Query: 429 RAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E+        G      + +  + + +  +      +++  G G
Sbjct: 402 TGELVAEAARKAGAKEVTFEPDSEQLLDSLRQEAGPDTLILFMGAG 447


>gi|328675240|gb|AEB27915.1| UDP-N-acetylmuramate--alanine ligase [Francisella cf. novicida
           3523]
          Length = 451

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 89/275 (32%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  ++            F      +S  +   D      + K   
Sbjct: 169 LSPQVAIVTNIDLDHMATYKNSYQNLLENFANFISKESVKSIYLCADDQGCRDLLAKYTL 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                          + +             I  +G +  F   LPG + V NA      
Sbjct: 229 TDKNITSYGFSNDADVQIYDYHIADEITHFKIIYKGDELSFKLQLPGRYNVQNATACIIT 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   L  +R  
Sbjct: 289 CLDLGFKYEDISNALIKVAGVARRFDIYTKIISGYQVTVIDDYGHHPVEVANSLSAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I 
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALALADQLILLPTYSAGEQVIKGAESQDIA 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  ++   +   AI    E+ N   V++V G G
Sbjct: 406 KELSQYLLADSFDHAIYFLEELANDDTVVLVQGAG 440


>gi|291522020|emb|CBK80313.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus catus GD/7]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 120/412 (29%), Gaps = 49/412 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D      + +  L + +  + L    +        N +AV+GT GK++  
Sbjct: 72  VVVYTAAIHPDNPEFAAAKSAGLPMMDRAELLGQIMTNYT-----NAIAVSGTHGKTTTT 126

Query: 131 SFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +  I        +  +G              +        +  +              
Sbjct: 127 SMLSHILLAADTDPTISVGGILKAIHGNIRVGHSDNFITEACEYTNSFLKFN-------- 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+D+ +      ++  R F E L  +   +I  +
Sbjct: 179 --------------PSLEIILNIEEDHLDFFKDINDIRHS-FRKFAEKLDADDILVINGE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            ++  E+                                    I+   K       + G 
Sbjct: 224 ISHVSEITDGLPCHIITYGLKPECDYAAENITFDEFAKGSFDLIAYGKKIDHIQLNVAGI 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A      + I   ++ + L        RFE+ G    G  +  DYAH    +
Sbjct: 284 HNVSNALAAIASARELHIPMDIIKKGLMAFEGTDRRFEYKGQ-FNGVTVIDDYAHHPTEI 342

Query: 370 EMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEK 427
           +  L   +     +I  VF      R +         AL LAD  ++ D     E DP  
Sbjct: 343 KATLTAAQKYPHRQIWCVFQPHTYTRTKAFFHEFAD-ALSLADKIVLADIYAARETDPGD 401

Query: 428 I-RAEIIH----------GIPGFIEKGN--RIEAI--RTAIEMLNKQDVLVV 464
           I   +I              P F E     R + I     I M    DV++V
Sbjct: 402 IHSRDIQKLLLEKGKEAYYFPSFEEIEKFLREKCINGDLLITM-GAGDVVLV 452


>gi|149186204|ref|ZP_01864518.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           SD-21]
 gi|148830235|gb|EDL48672.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           SD-21]
          Length = 429

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 106/401 (26%), Gaps = 66/401 (16%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G   +VVS    L        ++    P++   +      LFA       P  ++ +TGT
Sbjct: 64  GYAGVVVSPGVPLNTHPIKPHADSFGVPVI--SDIE----LFAQARADLPPHKVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + V  I + +G+ +   G         +                         
Sbjct: 118 NGKSTTTALVHHILETAGVPTTMGGNIGLPILEQEPLPEG-------------------G 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      +        N+  DH+D +      + A      E+   +  
Sbjct: 159 VYVLELSSYQIDL--TYSLDCDVAVLLNITPDHLDRYDGNFEKYQASKLRLFEMQASQHA 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+                         G        +                       
Sbjct: 217 AVTENV----------HRYPDDPTDVWGPWDSEDRARDAR------------PLGSQRDW 254

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G     NA  A  +   + +    V   L     +P R E +   +    +     
Sbjct: 255 PTLQGPHNGQNAFAAIEVAYELELSEEAVSRALRTFPGLPHRMERIAEIAGVAYVNDSKG 314

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             + +    L     I      +V G        K P +G+   +L  +           
Sbjct: 315 TNTAASAPALAAFHNIH----WIVGGL------AKEPGLGECEAELGLVKAAYTIGKAGP 364

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D   +      G     +  +   A+ +A       D +++
Sbjct: 365 DFAALLD----GRVPVEQCESLDRAVTSAAAKAEAGDTVLL 401


>gi|229157491|ref|ZP_04285568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
 gi|228625941|gb|EEK82691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
          Length = 450

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 126/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T+                +A+         
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTV-------------ACEVAQGAKENEVVV 165

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
               S +     L Q ++         F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 166 TELSSFQLMGVELFQPKIAA-------FLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K        ++V    +     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVAVGDIV--- 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T S        
Sbjct: 275 ----LPGQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRLEYVTTISNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|107021639|ref|YP_619966.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116688584|ref|YP_834207.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
 gi|123371911|sp|Q1BZG2|MURC_BURCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222962|sp|A0K487|MURC_BURCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|105891828|gb|ABF74993.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116646673|gb|ABK07314.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
          Length = 465

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 129/431 (29%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +       +  + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARHQGVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTDDNPRSED--PEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLN 457
           +  D  ++T+     E   P      +   +               +  +A+        
Sbjct: 381 STVDALVLTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKV---AQ 437

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 438 NGDVVITMGAG 448


>gi|146276746|ref|YP_001166905.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|166224720|sp|A4WQD6|MURC_RHOS5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145554987|gb|ABP69600.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 470

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 129/426 (30%), Gaps = 66/426 (15%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENI 117
           I  AI +G             +     R   P++     R+   L+              
Sbjct: 76  ISSAIKKG-----------NPELEEARRRGLPVV-----RRAEMLAELMRLRSN------ 113

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT GK++  + V  +  + G     I     I ++  + R                
Sbjct: 114 IAIAGTHGKTTTTTMVATLLDKGGFDPTVI-NGGVIHAYGSNARAGAGE----------- 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + VEA       +RL          TN+  +H+++  +  A        F   
Sbjct: 162 ------WMVVEADESDGSFNRLPATI---AIVTNIDPEHMEHWGSFDALRK-GFYDFVTN 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P    A+   D    + ++ R  +          Q     +                  
Sbjct: 212 IPFYGLAVCCTDHPEVQALVGRVTDRRIVTFGFNAQADVRAINLRYENGTAHFDVALQGE 271

Query: 298 KDFD----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +         P+PG+  V NAL A  +   +G+    + E L     V  RF  VG   
Sbjct: 272 GEGHLIEGMTLPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVG-EV 330

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
            G  I  DY H    +  +L+  R    GR+I V      R      +          AD
Sbjct: 331 GGVTIIDDYGHHPVEIAAVLRAARQAVKGRVIAV--HQPHRYSRLHTLFDDFCTCFNEAD 388

Query: 412 IAIVTDDNPRSEDP--EKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +  + +     E P     R +++ G+          I   + +E  R   E     D++
Sbjct: 389 VVAIAEVYAAGETPIAGASRDDLVAGLIAHGHRHARAILCEDDLE--RLVREQARPGDMV 446

Query: 463 VVAGKG 468
           V  G G
Sbjct: 447 VCLGAG 452


>gi|325102886|ref|YP_004272540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter saltans
           DSM 12145]
 gi|324971734|gb|ADY50718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter saltans
           DSM 12145]
          Length = 448

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 110/356 (30%), Gaps = 37/356 (10%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
             +    + +TG++GK++       I +++GL+    G                      
Sbjct: 101 RYNKAKTICITGSNGKTTTTLLTYHILKKAGLNVGLAGNIG------------------- 141

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                 ++ +   +  +E SS  LD   +   K       N+  DH+D +  +   +   
Sbjct: 142 YSFAKQVAEENFDYYVLELSSFMLD--NMYDFKADIAVLLNITPDHLDRYNYEMKNYVDS 199

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                +    +   I  ADD  +   + R      R               +        
Sbjct: 200 KFRIIQNQTSQDHFIYCADDPETIAALDRHQINAERHPFSITNKVENGAF-LENDTIYFN 258

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  +           L G   VYN++ +      + + +  V E +     V  R EFV 
Sbjct: 259 LNNTEPLTMTIQELALQGSHNVYNSMASGISAKILELRNETVRESMGDFKNVAHRLEFVA 318

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALD 408
             S    I    A   NS    L+++ +        V    G  D+G    M +  +   
Sbjct: 319 KISGITFINDSKATNVNSTWYALESMSSD-------VVLILGGVDKGNDYSMLRNLVKEK 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++ I  +  DN      + I       +   +   +  EA+  A  +  K   +++
Sbjct: 372 VSSIVCLGLDN------KAIHDAFEDDVEIIVNTKSAAEAVEVAYHLAKKGSTVLL 421


>gi|229031544|ref|ZP_04187544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
 gi|228729833|gb|EEL80813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
          Length = 450

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 127/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K+              E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKENALC-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKVYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALAAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS]
 gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS]
          Length = 1299

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 140/406 (34%), Gaps = 40/406 (9%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A              P L V + R  L+  A      +P  I+AVTG++GK+S  + ++ 
Sbjct: 490 ALLADATPLAFPHGVPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIED 549

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + Q  G+        +T      +    T   I + +  +   SQ               
Sbjct: 550 LLQVFGVPKRPTKNFNTFDGVNGEVANLTNEAIAVIEVAASFLSQRGG------------ 597

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R + ++      T++G  H++Y  + Q    A+++     L     A+I  D      
Sbjct: 598 -PRPNVLRPEVAMITSIGEAHLEYFGSPQGV--AEVKSNVFDLMSRGTAVIPRDADTYDY 654

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +++RA  AG   +S G          +        V   + G+   +     G     N+
Sbjct: 655 MVQRARAAGATTVSFGAH-PSADAHLLSYSAADGVVEAEIFGERITYELGALGRHFARNS 713

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMI 372
           + A G+  A+G+D       L     V GR   F   ++ G    +D  Y    +S+   
Sbjct: 714 VGALGVVAALGLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAA 773

Query: 373 LKNIRT---ITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPR---S 422
           ++ +        GR I V       G R +     + +  L  A D   +  D  R    
Sbjct: 774 IEMLSERATPPRGRRIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWD 833

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + P +IR +    + G     +R  A           DV++   KG
Sbjct: 834 DLPSEIRGQYYPTVDGLQAALDREFA---------DGDVVLF--KG 868


>gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS]
 gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS]
          Length = 851

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 140/406 (34%), Gaps = 40/406 (9%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A              P L V + R  L+  A      +P  I+AVTG++GK+S  + ++ 
Sbjct: 42  ALLADATPLAFPHGVPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIED 101

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + Q  G+        +T      +    T   I + +  +   SQ               
Sbjct: 102 LLQVFGVPKRPTKNFNTFDGVNGEVANLTNEAIAVIEVAASFLSQRGG------------ 149

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             R + ++      T++G  H++Y  + Q    A+++     L     A+I  D      
Sbjct: 150 -PRPNVLRPEVAMITSIGEAHLEYFGSPQGV--AEVKSNVFDLMSRGTAVIPRDADTYDY 206

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +++RA  AG   +S G          +        V   + G+   +     G     N+
Sbjct: 207 MVQRARAAGATTVSFGAH-PSADAHLLSYSAADGVVEAEIFGERITYELGALGRHFARNS 265

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGR-FEFVGTNSRGGRIYVD--YAHTSNSLEMI 372
           + A G+  A+G+D       L     V GR   F   ++ G    +D  Y    +S+   
Sbjct: 266 VGALGVVAALGLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAA 325

Query: 373 LKNIRT---ITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIVTDDNPR---S 422
           ++ +        GR I V       G R +     + +  L  A D   +  D  R    
Sbjct: 326 IEMLSERATPPRGRRIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWD 385

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           + P +IR +    + G     +R  A           DV++   KG
Sbjct: 386 DLPSEIRGQYYPTVDGLQAALDREFA---------DGDVVLF--KG 420


>gi|332522873|ref|ZP_08399125.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314137|gb|EGJ27122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 452

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 140/427 (32%), Gaps = 59/427 (13%)

Query: 54  EDGHLF----IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG +F      QA+   G + +  S   +L D    +    P +   N    K L+   
Sbjct: 38  NDGKVFEENPAAQALLELGIKVVCGSHPLALLDEDFELMIKNPGIPYSNPMVEKALAKGI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+A+TG++GK++  + +  +    G S+   G     +S  
Sbjct: 98  PVLTEVELAYLVSEAP---IIAITGSNGKTTTTTMIADVLNHGGQSALLAGNIGYPASEV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                              L ++    + +E SS  L    +          TNL   H+
Sbjct: 155 ------------------ALKAEAKDRLVMELSSFQL--MGVKAFHPQIALITNLMPTHL 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  A     ++ + +E   I+ AD   +  +  +         +        
Sbjct: 195 DYHGSLEEYV-AAKWNIQQRMTEEDYVILNADQELTSTLASKTKAKVLYFSTKKEVEGAY 253

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                   +    +  S           +PG   V NAL    +     I + ++ + L+
Sbjct: 254 LKGGKLYYNGDFIMEAS--------SIGVPGLHNVENALATIVVAKLSHIANPVISDTLK 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R ++ G            +    + +  L       + + +++   G DR   
Sbjct: 306 HFGGVKHRLQYAGQLQDITFYNDSKSTNILACQKALSGF----NKKNLILIAGGLDRGNS 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I        I+  +   + D  K+ AE+      +    +  +A R A +  N
Sbjct: 362 FDELVPDI--KGIKKMILIGE---TTDKMKLAAEMAE--VSYSSAKDVADATRLAFKGAN 414

Query: 458 KQDVLVV 464
             D++++
Sbjct: 415 AGDIILL 421


>gi|269928933|ref|YP_003321254.1| FolC bifunctional protein [Sphaerobacter thermophilus DSM 20745]
 gi|269788290|gb|ACZ40432.1| FolC bifunctional protein [Sphaerobacter thermophilus DSM 20745]
          Length = 452

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 57/167 (34%), Gaps = 14/167 (8%)

Query: 308 GEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                  A   A   +            +         PGR E V        + VD AH
Sbjct: 265 RHQVENAATAVAACWLLREQGIDIPEDAIRAGLAAVHWPGRLEVVREQPL---VVVDGAH 321

Query: 365 TSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRS 422
             ++   + +  + T    R  +V G   D+D    P M +I   LAD  I T   +PR+
Sbjct: 322 NVDAAARLAEALVDTFGQRRRTLVLGIARDKDI---PAMLEILAPLADRIIATASHHPRA 378

Query: 423 EDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            DP ++ A             E  +    +  A++    +D++ V G
Sbjct: 379 ADPAQVAAAARAAGGAGLAVEEAPDIATGLHRALDAAAPEDLICVTG 425


>gi|46201829|ref|ZP_00208265.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 476

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 99/283 (34%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +   A   TN+  +H+D++ T +    A  R F E +P    A +  D    + ++ R  
Sbjct: 174 LPSTAVVVTNIDPEHMDHYGTVEKLHEA-FRTFVENIPFYGFAAMCIDHPEVQALVARVP 232

Query: 262 NAGCRVLSVGYQ------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +         +Q         + +K                        P+ GE  V N+
Sbjct: 233 DRKLVTYGFNHQALVRVENLTMDIKGASYDVVITDRVTGATRTISGIHLPMYGEHNVLNS 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +   +G+ + +V + L     V  RF   G  ++G  +  DY H    +  +LK 
Sbjct: 293 LAAIAVANELGLPNDVVKKALGGFKGVKRRFTRTG-EAKGVTVIDDYGHHPVEIAAVLKA 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA--E 431
            R+   G +I V      R      +  +       AD+ IV D     E P +      
Sbjct: 352 ARSACQGNVIAVV--QPHRYSRLSSLFAEFCTCFNDADMVIVADVYAAGEKPMEGFDKTA 409

Query: 432 IIHGIPGFIEKGNRIEAIRTAI-----EMLNKQDVLVVAGKGH 469
           ++ G+     +     A   A+      +    D++V  G G+
Sbjct: 410 LVKGLQEHGHRRVMALAEPQALAPLVNSLAGPGDMVVCLGAGN 452


>gi|254683377|ref|ZP_05147237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. CNEVA-9066]
          Length = 450

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 126/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             AI  ADDA    +   +        +         +K               E     
Sbjct: 219 YSAI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKAEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|253580842|ref|ZP_04858105.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847912|gb|EES75879.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 427

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIA 406
                 +     VD AH   + +M+  +I     G+ I+ + G   D+D   R ++ K A
Sbjct: 294 RFTVICKKPLFVVDGAHNPAAADMMAASIEHYFKGKRIIYIMGVFADKDY--RSVIQKTA 351

Query: 407 LDLADIA--IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              AD    I T DN R+    ++   +    P         +A+  A  +  +QDV++ 
Sbjct: 352 H-FADRILTIQTPDNIRALPAGELAKTVSEYNPNVQAMDTIKDAVEEAFSLAGEQDVIIA 410

Query: 465 AG 466
            G
Sbjct: 411 FG 412


>gi|157803465|ref|YP_001492014.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia canadensis str.
           McKiel]
 gi|166224723|sp|A8EXZ6|MURC_RICCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157784728|gb|ABV73229.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia canadensis str.
           McKiel]
          Length = 477

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 74/436 (16%), Positives = 137/436 (31%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH  +PQ I      +V+SSA      +    +    PI+        L           
Sbjct: 64  GH--VPQNITN-VSYVVISSAINPDNPEIQEALERKIPIIRRAEMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNRSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++      +A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYKDFATLISA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +      I    +          +
Sbjct: 210 FIINLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSADAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P+PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPIPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-----PI 401
             V        I  DYAH    ++  L   + I + +   V          +        
Sbjct: 330 TKVA-EYNMASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQHLFDDF 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEII--HGIPGFIEKGNRIEAIRTAI 453
           M   A   ADI  +TD     E+P      + +  +I                +A+   I
Sbjct: 389 MLCFAD--ADILYITDIYAAGENPIEGITGQSLVDKITKNKYHDQANFLATLDDAVGVII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     DV+++ G G+
Sbjct: 447 DNAVSGDVIIMMGAGN 462


>gi|170731884|ref|YP_001763831.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           MC0-3]
 gi|229486474|sp|B1JV79|MURC_BURCC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169815126|gb|ACA89709.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 129/431 (29%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +       +  + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARHQGVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTDDNPRSED--PEKIRAEIIHGIPG--------FIEKGNRIEAIRTAIEMLN 457
           +  D  ++T+     E   P      +   +               +  +A+        
Sbjct: 381 STVDALVLTEVYAAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKV---AQ 437

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 438 NGDVVITMGAG 448


>gi|224541556|ref|ZP_03682095.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525523|gb|EEF94628.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
          Length = 446

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 120/352 (34%), Gaps = 38/352 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             ++ +AVTGT+GK++  + + +I + +G  +   G           N            
Sbjct: 106 KKQHYIAVTGTNGKTTTVTLIYEILKAAGRKAHICGNYGIPYCEVVLNEHLYEE------ 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VE S+  L    ++  K    +  NL  DH+DY  +   Y  A   
Sbjct: 160 --------EGHDIVVEMSNFQLID--IEEFKPEVATVLNLTPDHLDYMDSLDEY-YASKM 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  ++   I  +DD   +  + +                 + LK     +  Q+V 
Sbjct: 209 RIYMNQDEKDLFINNSDDETLQSYLAKYPVPSRIETFSVKGQGDVELKDNAIYYKGQKVI 268

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E K         G   V N +VA   C ++G+    + + L     V  R EFV   
Sbjct: 269 DRDEIKIV-------GLHNVANMMVAIAACASVGVSLDSIHDTLAAFKGVEHRIEFVREL 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                        +++  + +K        + +++   G +++   + +  +    L   
Sbjct: 322 DGVRYYNDSKGTNTDAAVIAIKAFE-----KPVILLMGGHEKNLDLKDV--REQNPLIKT 374

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I        E  E+   ++ H  P  I   +  +AI  A E+  + DV+++
Sbjct: 375 LIC-----FGETKERFSKDMAH--PHTIVVDHMKDAILKAKEIAKEGDVVLL 419


>gi|39993|emb|CAA45555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|383709|prf||1904153A murD gene
          Length = 369

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 120/356 (33%), Gaps = 49/356 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++  + + ++ +     +   G   T++S    +             
Sbjct: 30  SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVASEVAYHADG---------- 79

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      +  E SS  L        +       N+   H+DYH T++ Y  AK ++
Sbjct: 80  --------DEWIVTELSSFQL--MGTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKV 129

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +      +  AI+  DD     + +                +  ++K    +        
Sbjct: 130 YLHQTASD-KAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIM-------F 181

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + E         LPG   + N L A  +    G  +  V + L     V  R ++V T +
Sbjct: 182 NGEAILPLEEVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTTVN 241

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RPIMGKIALDLA 410
                    A    +    L         + +++   G DR  G    +P M  +     
Sbjct: 242 GRKFYNDSKATNILATSKRLSAFD-----KPVILLAGGLDRGNGFDDLKPYMKHV----- 291

Query: 411 DIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A++T     P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 292 -KAVLTFGQTAPKLE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 341


>gi|300021779|ref|YP_003754390.1| UDP-N-acetylmuramate/alanine ligase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299523600|gb|ADJ22069.1| UDP-N-acetylmuramate/alanine ligase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 478

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/287 (21%), Positives = 103/287 (35%), Gaps = 23/287 (8%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G  TN+  +H+DY  + +A  +     F + +P    A+   D    +++++R +
Sbjct: 173 LPTEIGIVTNIDPEHLDYFGSVEAMHHEYE-AFLKNIPFFGLAVACIDHPVVRDMIERLN 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE----------GKDFDFLFPLPGEFQ 311
                   + Y         + +I  +   T               K  D+  P+PG   
Sbjct: 232 LRADGRRLLTYGQSQDADLVLQSIRIEGNTTYFDATLTASVKGGARKLTDWSVPIPGAHN 291

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NAL A  +    G++ A +   +     V  RF+F G    G  IY DY H    +  
Sbjct: 292 ALNALAAIAVATQAGLEDAKIKAAMAGFSGVKRRFQFTG-EWNGVGIYDDYGHHPAEISA 350

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP---- 425
           +L   R  T G++I V      R    R +    A     AD  IV       E P    
Sbjct: 351 VLAAARGGTKGKVIAVVEP--HRYTRVRDLFEDFARCFKDADHVIVAPLYTAGEPPITGI 408

Query: 426 --EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
             + + A I        E  +   AI  AI+      D++V  G G+
Sbjct: 409 DNQTLAARIATAGRRSAEAVDEPGAIAAAIKRVAGPGDIVVCLGAGN 455


>gi|229818497|ref|ZP_04448778.1| hypothetical protein BIFANG_03806 [Bifidobacterium angulatum DSM
           20098]
 gi|229784145|gb|EEP20259.1| hypothetical protein BIFANG_03806 [Bifidobacterium angulatum DSM
           20098]
          Length = 78

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 426 EKIRAEIIHGIPGFIE----KGNRIEAIRTAIEMLNKQ----DVLVVAGKGHETVHIVTN 477
           E I  ++   +           +R +AI +A+    +     DV++V GKGHE      N
Sbjct: 2   EDICRDMADHVTNSHVTSDTIIDRTQAIASALHEAQEDKDRTDVVLVIGKGHERWIKDLN 61

Query: 478 GEKKMSVDCDIIREIL 493
                  D  ++  +L
Sbjct: 62  RHVPYEGDDCVVERLL 77


>gi|108804329|ref|YP_644266.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
 gi|123069100|sp|Q1AVX4|MURC_RUBXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108765572|gb|ABG04454.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrobacter xylanophilus
           DSM 9941]
          Length = 447

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 141/431 (32%), Gaps = 65/431 (15%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTR-KFLSLFASRLYG 111
           GH    +A   G AE +V+S+A    +       R + P++     R + L+   +   G
Sbjct: 51  GH----EARQVGDAEVVVISTAIPKTNPELLEARRRSIPVI----PRAEALARILAEGRG 102

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +    +  G +   +     ++    +        I   
Sbjct: 103 ------IAVAGTHGKTTTTSMIAHSLRALGENPTAL-VGGELNDIGSNVIFGREDLIVAE 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S  S                       +   A   TN+  DH D++ + +       
Sbjct: 156 ADESDRSILR--------------------LHPQAAVITNIEYDHPDFYASLEEVV-ETF 194

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP E   ++ ADD   + + + A          G +       +   +     +
Sbjct: 195 ARFVAGLPPEGHLVLCADDPRCRRLAELAPCPVTTYGLSGGE------LRARVLSPGSYL 248

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K  +    + G   V N+L AAG+   +G D       L     V  RF+  G 
Sbjct: 249 LFEGARKRGEVSLGVYGRHNVLNSLAAAGIARWLGHDPLEAARTLGSFGGVRRRFQLKG- 307

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGG-DRDQGKRPIMGKIALD 408
              G R+  DYAH    +  IL   R      GRII VF      R +      G+    
Sbjct: 308 ERSGVRVVDDYAHHPTEIMAILDVARATAAPEGRIIAVFQPHRYSRTRKLYREFGRAFGR 367

Query: 409 LADIAIVTDDNPRSEDPE----------KIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LN 457
            AD  +VT+     E P+           I        P      +  EA+   + M   
Sbjct: 368 -ADAVVVTEVYGAGEMPQPGVSGKLVVDAICE--TSDRPEVYYVPD-QEALPEVLRMISG 423

Query: 458 KQDVLVVAGKG 468
            +D ++  G G
Sbjct: 424 PRDTVITLGAG 434


>gi|126729249|ref|ZP_01745063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
 gi|126710239|gb|EBA09291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
          Length = 466

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 113/355 (31%), Gaps = 39/355 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GKS+ ++ +  I   S  SS   G                   + L   
Sbjct: 118 PPRVVAVTGSNGKSTTSALIHHILTASVRSSQLAGNIGRGVLDIDPPEDGGVVVLEL--- 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS+  +  R   +      FTNL  DH+D H     YF AK RL
Sbjct: 175 ----------------SSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRL 216

Query: 234 FEELLPKESPAIIYADDAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           F E  P      +   +      +    RA +   RV +    G    +       ++ +
Sbjct: 217 FAEGGPDRCVIGVDEVEGQFLAGQMAEGRADDRVIRVATHKLTGPGWMVFARKGFLSEWR 276

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               +   D   +  LPG     NA  A   C ++G+    +   L     +P R + + 
Sbjct: 277 KGRQIASVDLRDVAGLPGAHNHQNACAAWAACRSLGLGPREIEAGLRSFAGLPHRSQRIA 336

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  +    A   +S    L     I   R +              P +  +A    
Sbjct: 337 EQGGVIFVNDSKATNVDSALKALLAFDRI---RWVCGGLMKEGGLAALEPGLNHVAKAY- 392

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              I         +PE    ++  G       G   +A+  A E     DV+++A
Sbjct: 393 --VI-------GREPEGFALQL--GGVEAELCGTMDQAVARAAEDAQPGDVVLLA 436


>gi|160880895|ref|YP_001559863.1| FolC bifunctional protein [Clostridium phytofermentans ISDg]
 gi|160429561|gb|ABX43124.1| FolC bifunctional protein [Clostridium phytofermentans ISDg]
          Length = 424

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVF 388
              +         PGRFE +    +   + +D  H    +E   + ++    G+  IV+ 
Sbjct: 277 ENAISEGMNYVTWPGRFEVL---CKQPLVILDGGHNVQCVEAFSEVLKQFIPGKKAIVIL 333

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           G   D+D      M    +      I VT  N R+   E++  E+    P        +E
Sbjct: 334 GVLADKDY---KGMIPYLVPFTKRFIAVTPKNTRALPSEQLAEELSKHHPLVSHNATPVE 390

Query: 448 AIRTAIEMLNKQDVLVVAG 466
            I  A+    + D++ V G
Sbjct: 391 GIMAALRDAREDDIICVIG 409


>gi|311029926|ref|ZP_07708016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           m3-13]
          Length = 449

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 128/424 (30%), Gaps = 62/424 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------L 104
           G+      +++G E +      ++ D    +    P +   N    L+            
Sbjct: 45  GNEQAEYLLSKGMEVVCGGHPTNIFDQKIDVVFKNPGIPYHNPLVQLATEKGIPVLTEVE 104

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A ++       I+ +TG++GK++  + + ++      S    G    +S          
Sbjct: 105 LAYQISEAP---IIGITGSNGKTTTTTLIDEMLAADKKSPLIAGNIGNVSVEV------- 154

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                         +     +  E SS  L     D  +     F NL   H+DYH T  
Sbjct: 155 -----------AQQATEKDIMVTELSSFQL--MGTDIFRPKISVFLNLFEAHLDYHGTLD 201

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y  AK ++F     ++   +    D      +           S        +LK    
Sbjct: 202 EYGKAKAKIFFNQTKEDYAVV--NADDAQVMKLSEGIQPTIVPFSTNKTVDGAYLKDNYV 259

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                      E         LPG+  + N L A       G+ +  ++E L +   V  
Sbjct: 260 C-------FKDEKIISIDQIVLPGKHNLENILAAVAAVKLSGVSNEAIIEVLTRFSGVKH 312

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR---PI 401
           R +F+G            A    + +  L           +V+   G DR        P 
Sbjct: 313 RLQFIGERDGRRFYNDSKATNILATQKALSAFEN-----NVVLLAGGLDRGNEFDDLLPY 367

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           M  +        +VT      E  EK+       GI       N  +A+  A EM    D
Sbjct: 368 MSNV------KVLVT----FGETAEKLMRTASEAGIKQIKHVDNVEKAVPVAYEMSEGGD 417

Query: 461 VLVV 464
           V+++
Sbjct: 418 VILL 421


>gi|294674970|ref|YP_003575586.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
 gi|294473470|gb|ADE82859.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
          Length = 443

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 115/351 (32%), Gaps = 35/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I + +G  +   G                   + L   
Sbjct: 101 DSKMICITGSNGKTTTTSLIYHIFKEAGYDAGLAGNIGN--------------SLALQV- 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +     +  +E SS  LD   +   +       N+  DH+D +  +   +      
Sbjct: 146 ----AEDPHEYYIIELSSFQLD--NMYDFRADIAILLNITPDHLDRYNFEMQNYVDAKMR 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +    +   I +ADD   K  +++      +      + K +        +  ++   
Sbjct: 200 IIQNQTDKDAFIYWADDPIIKRELEKYDIHSIQYPFSELKEKGVIGYIEEGKYKIEKPE- 258

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G+  +YN+L A       GI    + + L     V  R E V T  
Sbjct: 259 --PFNMEQESLSLTGKHNIYNSLAAGIAADIAGIKKEEIRKSLSDFPGVEHRLEKVCTVR 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A   ++    L+ ++T      +++   G D+     PI   +    + I 
Sbjct: 317 GVQYINDSKATNVDACWYALEAMKT-----KVILIIGGKDKGNDYEPIKPLVKEKCSGIV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN +  D          GIP   +  +  E +    EM    + +++
Sbjct: 372 YLGADNQKLHDNFDNL-----GIP-VRDTHSMKECMEACYEMAKPGETVLL 416


>gi|255535504|ref|YP_003095875.1| cyanophycin synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255341700|gb|ACU07813.1| Cyanophycin synthase [Flavobacteriaceae bacterium 3519-10]
          Length = 876

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 120/386 (31%), Gaps = 27/386 (6%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R   +     LY +     + +   +G +   +  + I      + +++G T++   + 
Sbjct: 462 PRNVAAPVVDMLYPQGKPFRIPIIAVTGTNGKTTTTRLIAHIVKNNGYRVGFTTSDGIYI 521

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           Q+  LT         A   L    V    +E +  G+ +  L       G  TN+  DH+
Sbjct: 522 QNTMLTKGDTTGPISAEFILKDPTVEFAVLETARGGILRSGLGFSSCDIGVLTNIKEDHL 581

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-------------KRAHNAG 264
             +         K++       K+    +   D      +                +   
Sbjct: 582 GMNDIHNLKDLTKVKRVVLDAVKKGGWSVLNADDEYSMRLMPDLDSKIAIFSLDENNEYI 641

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +    G          +     + ++ +                F + N L A      
Sbjct: 642 RKFAKEGKITCVYEEGFITIKKGEWKIRVVKAH-SVPITMEGKARFMISNVLAATLATYL 700

Query: 325 IGIDSALVLEHLEKLHV----VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            G     +   L  L       PGR            + +D+AH  +  E I   ++ + 
Sbjct: 701 HGFAIEDIANSLRTLIPSAALTPGRLNIFKFKKFN--VLIDFAHNPSGYEAIEDYLKNVD 758

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIP-- 437
           S + I +    GDR        GKIA  + D  I+ ++ + R    E+I   +I GI   
Sbjct: 759 SPKKIGIISGVGDRRDEDIMQCGKIAGRMFDHIIIRNEKHLRGRTEEQINGLVISGIHSS 818

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQ 459
                +      I+A++ A+ +  + 
Sbjct: 819 GRDVSYEIIPVEIDALKHAMSLAEEN 844


>gi|313677377|ref|YP_004055373.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Marivirga
           tractuosa DSM 4126]
 gi|312944075|gb|ADR23265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marivirga
           tractuosa DSM 4126]
          Length = 455

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 128/394 (32%), Gaps = 55/394 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A +++     +  N P++   +  +F        +G     I+A+TGT+GKS+       
Sbjct: 74  APNVEIVKKALGKNIPVI---DELEFA-------FGFTKGKIIAITGTNGKSTTTMLTYH 123

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + + +GLS    G                            L         +E SS  +D
Sbjct: 124 LLKEAGLSVGLGGNIGKS-------------------MAGQLVDIDFDWWVLECSSFQID 164

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                  K       N+  DH+D +  +   + A      +   KE  A++Y +D    +
Sbjct: 165 --GFVNFKPHIAILLNITPDHLDRYDYKVENYVASKFSLFKNQGKEDFALLYTEDKLIHD 222

Query: 256 VMKRAHNAG----CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              +   +      +   + Y+G + +   +    +KQ+ T S +               
Sbjct: 223 YQVKHPFSSKLLEFKFEDIPYEGAYANPSGIIVNLDKQRHTFSQDLLTIKGKHNQT---- 278

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA+ +        I +  + E L K   +  R E VG       I    A   +    
Sbjct: 279 --NAMASILTAKLTKIKNDKISESLPKFKSIQHRLESVGNIHGIEFINDSKATNVD---A 333

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRA 430
           +   +   T   I +V    G  D+G                I +  DN      EKI+ 
Sbjct: 334 VYYALDAFTRPIIWIV----GGVDKGNDYSQLDAVSTNVKAIICLGKDN------EKIKE 383

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 P   E  +  +A+    ++   ++V+++
Sbjct: 384 HFKSRCPIIEETQSMQDAVEMGYKLSKDREVVLL 417


>gi|170728851|ref|YP_001762877.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella woodyi ATCC
           51908]
 gi|229620422|sp|B1KKX6|MURC_SHEWM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169814198|gb|ACA88782.1| UDP-N-acetylmuramate--alanine ligase [Shewanella woodyi ATCC 51908]
          Length = 489

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 144/421 (34%), Gaps = 54/421 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA+ +VVS+A    +          I VV   R+   L+      +G      +AV GT 
Sbjct: 80  GADVVVVSTAIHADNPELLEAQALRIPVV---RRAEMLAELMRYRHG------VAVAGTH 130

Query: 125 GKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S +  +  Q     +F IG    ++  ++   ++R                   
Sbjct: 131 GKTTTTSLIASVYGQAERDPTFVIGGLLNSAGTNARLGNSRYLIAEADE----------- 179

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                     S     H    ++ +    TN+  DH+D ++       +    F   LP 
Sbjct: 180 ----------SDASFLH----LQPMVSVITNIEADHMDTYEGDFERLKSTFIDFLHNLPF 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  DD   +E++  +                  L  V   +  +        +D 
Sbjct: 226 YGIAVMCIDDPVVRELLP-SVGRKIVTYGFSEDADVQALNFVQDGYRSRFTLRRTGVEDV 284

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           + +  LPGE  V NAL A  +     I+   +++ L     +  RFE +G         V
Sbjct: 285 EVMVNLPGEHNVLNALAAIAVASEDEIEDEAIIQALADFEGIGRRFEQLGCFDTDRGEVV 344

Query: 361 ---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIV 415
              DY H  + +   +K  +     + +V+        + +       ++     D  ++
Sbjct: 345 LVDDYGHHPSEVAATIKAAKLGWPEKRLVMIYQPHRYSRTRDLYEDFVEVLSQ-VDCLLL 403

Query: 416 TDDNPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D     E      D   +   I + G    I   ++ + +    ++L + D+L+  G G
Sbjct: 404 LDVYSAGEAAIPGADSRALCRSIRLRGQLDPIFVADQEQLLTLLPDVLQEGDLLLTQGAG 463

Query: 469 H 469
           +
Sbjct: 464 N 464


>gi|304385172|ref|ZP_07367518.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
 gi|304329366|gb|EFL96586.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
          Length = 464

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 142/401 (35%), Gaps = 46/401 (11%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPENILAVTGTS 124
           + I+      L   +  I    P+LV               A R+       ++ VTG++
Sbjct: 69  KGILAQHHIELIVKNPGIPYTNPVLVAAKEQNVPIIAEPELAYRVMD---SELIGVTGSN 125

Query: 125 GKSSVASFVQ-QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++V + +Q  + Q+   +++  G                P+   + KA +        
Sbjct: 126 GKTTVTTMIQLMLDQQDHHAAYVAGNIGV------------PATTVVQKATANDRVVMEL 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              + A    L  H             N+  +H+D+H+T++ Y N KMR+ E     +  
Sbjct: 174 SSFMLAGIDQLHPH--------IAVVNNIFSNHLDWHKTRENYVNDKMRITENQTKDDYF 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I + D+   +++ +R           G      + K        +++  + E       
Sbjct: 226 VINW-DNPEWQQLAQRTAAQVVPFSRQGLVENGAYAKDGQLYFKNERIMAADEIG----- 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  V NAL A  +    G+ +  + + L+    V  R ++V T +         A
Sbjct: 280 --VPGDQNVENALAAIAVAKIEGVANKHIKQVLQTFSGVKHRIQYVKTLAGRQFYNDSKA 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
                +E     ++     R I++   G DR      ++  +        IV   N ++ 
Sbjct: 338 T---DIEATQVALKAFQ--RPIILIAGGLDRGDDYTRLVADL-KPHVKEVIV---NGQTA 388

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  A+   G+    +     +++  A E     DV+++
Sbjct: 389 AHMQEAAQ-AAGVKVVKDSPRVKDSVAIAFEDSQPGDVILL 428


>gi|222111403|ref|YP_002553667.1| folc bifunctional protein [Acidovorax ebreus TPSY]
 gi|221730847|gb|ACM33667.1| FolC bifunctional protein [Acidovorax ebreus TPSY]
          Length = 441

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 114/398 (28%), Gaps = 36/398 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +   A RL  +    ++ V GT+GK S  + ++ +  ++G  +        +    +
Sbjct: 27  LERVGEVARRLGLRFNCPVITVAGTNGKGSTCAMLEAVALQAGYRTGVYTSPHLVHFEER 86

Query: 159 DNRLT----------TPSPIYLAKALSYLSSQGVTHVSVE------ASSHGLDQHRLDGI 202
                          +   +  A+  +                    S   LD   L+  
Sbjct: 87  CRIRGEIVDAASLVASFEAVERARTQNGNEVTLTYFEFTTLAILRHMSLSLLDVAILEVG 146

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMK 258
                  TN+         +        +    E + +E   I+                
Sbjct: 147 LGGRLDATNIIDADCAVITSVDIDHVEFLGPDRETIGREKAGIMRTGRPVVVSDPMPPQS 206

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +A      +   G+  +                  G  +  L           AL A
Sbjct: 207 VIDHAREIGADLWRFGQDFNFSGDKQQWAWAGRGRRYAGLAYPALRGANQLVNASGALAA 266

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                     +A  +     L  +PGRF+ V        + +D AH  +S+  +  N+  
Sbjct: 267 LEAVRERLPITAQAVRAGLALVELPGRFQIVPGQPT---LVLDVAHNPHSVAALTANLDA 323

Query: 379 I-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKI------RA 430
           +        VFG   D+D      M      + D    TD   PR+E    +        
Sbjct: 324 MGYFPTTHAVFGAMADKDL---APMLAKVGPVIDRWYFTDLPTPRAETAASLQQKWNALQ 380

Query: 431 EIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  G P        N  EA+R A+E  +  D +VV G
Sbjct: 381 MVAGGRPEVATSLHANPEEALRAAVEAADPADRIVVFG 418


>gi|218439183|ref|YP_002377512.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 7424]
 gi|254765996|sp|B7KHE9|MURC_CYAP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218171911|gb|ACK70644.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7424]
          Length = 495

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 123/419 (29%), Gaps = 55/419 (13%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+ S+A +  +    A      PI    +    L               + V GT GK++
Sbjct: 109 IICSTAIADNNSEYQAAKELGYPIFHRSDVLAALIK---------DYYSIGVAGTHGKTT 159

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +    GL                D  +     +      + L         V+
Sbjct: 160 TSSLIGYMLLGGGL----------------DPTIIVGGEVDAWDGNARLGQGQFLVAEVD 203

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++QT            ++            
Sbjct: 204 ESDGSLTKH-----SPRIGIITNIELDHPDHYQTLDEVVKTFQIFEQQC---------ET 249

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFLFPL 306
             A       R H       S+    +  +  K         +    E   +       L
Sbjct: 250 LIACIDCKTVRTHFKPQITYSLDPDREADYTVKNVTYKTDGSMAEVWEKGQYLGQMHISL 309

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+  + NAL A  +   +G+D  ++   +        RFE  G +  G     DYAH  
Sbjct: 310 LGQHNISNALAAVAVGRTLGLDFEVIASGIATFIGAKRRFEHKGYSQ-GITFIDDYAHHP 368

Query: 367 NSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI-MGKIALDL--ADIAIVTDDNPRS 422
           + +   L+  R  +   R   V          +    M + A     AD+ IVTD     
Sbjct: 369 SEVRCTLEAARLRLDQDRYRRVVAIFQPHRYSRTATFMDEFATSFDDADVVIVTDIYSAG 428

Query: 423 E------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E        +++   I           +         ++L   D+ +  G G+    I+
Sbjct: 429 EVNIGQISGQQVADAISRHHQQVFYHPSLKSLGSFLSQILEPGDLALFLGAGNLN-QII 486


>gi|162148962|ref|YP_001603423.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545285|ref|YP_002277514.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189028992|sp|A9H0J3|MURC_GLUDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161787539|emb|CAP57135.1| putative UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532962|gb|ACI52899.1| UDP-N-acetylmuramate/alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 480

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 130/428 (30%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA  +VV+S    +D    + +   ++ V    + L+            
Sbjct: 59  GHD----AANLGAAQVVVTSTAVRRDNPEVVAARARLIPVVRRAEMLAELMRL------- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
                 G +   +  + +      +      +     I ++  + R+ +           
Sbjct: 108 RWAVAVGGTHGKTTTTSLIAAVLEAARLDPTVINGGIIEAYGTNTRMGSGD--------- 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + VEA        RL  +       TN+  +H+D+  T +A   A    F 
Sbjct: 159 --------WMVVEADESDGSFLRLPSVI---TVVTNMDPEHLDHWGTAEAMQAAY-DQFV 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC------AIHNKQ 289
             +P    A++  D    ++++ R  +          Q      K +             
Sbjct: 207 SNIPFYGFAVLCIDHPAVQQMIPRLSDHRIVTYGFSPQADIRAEKVITDKLGATFEVVVT 266

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               +   +   F  P+ G   V NAL A  + + + ID A +         V  RF   
Sbjct: 267 NRNRNRTRRAGPFRLPMLGHHNVQNALAAIAVGVEMDIDDATLRSAFAGFRGVKRRFTRT 326

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  + G  +  DY H    +  +LK  R   +  +I V      R    + + G+    +
Sbjct: 327 G-ETGGITVIDDYGHHPVEIAAVLKAARQAGARDVIAVV--QPHRYSRLQTLFGEFCTCM 383

Query: 410 ADI--AIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
            D    IV D     E P      + +   +   G    +   +          +    D
Sbjct: 384 NDAGTVIVADVYAAGEAPIPGVDRDALVEGLRERGHRSVVPLPDPEHLAEMVHAIARPGD 443

Query: 461 VLVVAGKG 468
            +V  G G
Sbjct: 444 FVVCLGAG 451


>gi|78065122|ref|YP_367891.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
 gi|109892696|sp|Q39JW9|MURC_BURS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77965867|gb|ABB07247.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
          Length = 465

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 128/431 (29%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH  +   I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAVN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  +PG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 RDGRAPLAVVLNMPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 AADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTDDNPRSEDPEKIR--AEIIHGIPG--------FIEKGNRIEAIRTAIEMLN 457
           +  D  ++T+     E          +   +               +  +A+        
Sbjct: 381 STVDALVLTEVYAAGEAAISTANGDALSRALRTVGKVDPVFVATVDDVPDALAKV---AQ 437

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 438 NGDVVITMGAG 448


>gi|319899156|ref|YP_004159249.1| UDP-N-acetylmuramate--alanine ligase [Bartonella clarridgeiae 73]
 gi|319403120|emb|CBI76678.1| UDP-N-acetylmuramate--alanine ligase [Bartonella clarridgeiae 73]
          Length = 456

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 92/280 (32%), Gaps = 15/280 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P    A++  D    + ++ R H
Sbjct: 154 LPADIAVVTNIDVEHLDHYGNFNALREA-FRQFVENVPFYGFAVMCLDHPEVQTLVSRIH 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNA 315
           +          Q     L             +    K  +         P+ G+  V NA
Sbjct: 213 DRWVITYGANPQADVRFLNLSMEGQKMYFDILIRSQKTGEKTEINNLILPMSGKHNVSNA 272

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +G+    + + L +   V  RF   G +  G  I+ DY H    ++ +L  
Sbjct: 273 TAAIAIAYELGVSPEAIKKGLAEFGGVKRRFTKTG-DWNGVEIFDDYGHHPVEIKAVLHA 331

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
            R    GR+I V                    + AD  ++T      E+P      +++ 
Sbjct: 332 ARESAKGRVIAVVQPHRYTRLYHLFDDFSACFNDADTVMITPVYAAGEEPIAGFSSKELV 391

Query: 430 AEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I + G           + I     +    D +V  G G
Sbjct: 392 EHIQMAGHRDVRLINTLEDVISIVSTLAKSGDYVVFLGAG 431


>gi|227497591|ref|ZP_03927814.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces urogenitalis
           DSM 15434]
 gi|226832960|gb|EEH65343.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces urogenitalis
           DSM 15434]
          Length = 495

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 12/159 (7%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRII 385
              +   L        RFE  G    G R+  DYAH    ++ +    R +     GR++
Sbjct: 324 PQAMARALGAFGGTKRRFEDRG-EVGGVRVVDDYAHHPTEIQALATAAREVAQARGGRLL 382

Query: 386 VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHGIPGFI 440
           ++F      R Q      G+ AL LAD+ +VT   P  E     P      +   +PG  
Sbjct: 383 ILFQPHLFSRTQAFAERFGQ-ALSLADLVVVTAVYPAREAQEDFPGVSGRTVSEHVPGGR 441

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGH--ETVHIVTN 477
              +R+EA R+  +   + D+L+  G G   E   ++ +
Sbjct: 442 YLADRVEAARSLADAAQRGDLLLTVGAGDVTEMGQVILD 480


>gi|325262546|ref|ZP_08129283.1| tetrahydrofolate synthase [Clostridium sp. D5]
 gi|324032378|gb|EGB93656.1| tetrahydrofolate synthase [Clostridium sp. D5]
          Length = 431

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 10/204 (4%)

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +    Y       + +    ++Q+ +         FL            L       + G
Sbjct: 215 MKCRMYILYPEEAEIIEENWDEQRFSYRDWKNIRIFLAGRYQIANAVTVLGVIRALRSRG 274

Query: 327 IDSALVL-EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI- 384
            + +        +  V PGR       SR   + VD AH   +   + +++     GR  
Sbjct: 275 YEISKRDVMAGFEKTVWPGRL---TCISREPLVIVDGAHNEEAALKLQESVEQYFRGRRL 331

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEK 442
           I + G   D++  K   +G I   LA+     +  D  R+    ++   +    P     
Sbjct: 332 IFIMGVFRDKEYEK---IGSIMGPLAEKIYTVELPDTGRTLGAGELEQALKPYCPDVKAV 388

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
               +A+R A     K+DV++  G
Sbjct: 389 CGIEQAVREACASAEKEDVILAFG 412


>gi|167747842|ref|ZP_02419969.1| hypothetical protein ANACAC_02571 [Anaerostipes caccae DSM 14662]
 gi|167652737|gb|EDR96866.1| hypothetical protein ANACAC_02571 [Anaerostipes caccae DSM 14662]
          Length = 433

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 67/256 (26%), Gaps = 10/256 (3%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+D+        ++  +   +L       +    D  S  V      
Sbjct: 178 FPKISIILNIEEDHMDFFHDINEIRDSFKKFAHKLPEDGLLVLNGEIDDISYIVEGLKAK 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +               ++ +                  + G   + NAL AA + 
Sbjct: 238 YVTYGIDNDEFTYTAKNISYDSMGHGHFDLYKEGTFVDSLSLNVNGLHNINNALSAAAVA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+    V   L        RFE+ G    G  +  DYAH    ++  L   +     
Sbjct: 298 DFLGLSIDTVKAGLLTFSGAKRRFEYKG-TCGGFTVIDDYAHHPTEIKATLNACKNYPHK 356

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED------PEKIRAEIIHG 435
            +  VF      R         +      D  I+TD     E          +  +I   
Sbjct: 357 ELWCVFQPHTYTRTNAFLDEFAEALSQ-CDHVIITDIYAAREKDTGMVHARDLADKIEKT 415

Query: 436 IPGFIEKGNRIEAIRT 451
                   +  +AI  
Sbjct: 416 GTDVRYIKD-FDAIEE 430


>gi|319947490|ref|ZP_08021722.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
 gi|319746430|gb|EFV98691.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
          Length = 450

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 128/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYTNPMVERALEKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G +    G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQNGLLSGNIGFPASQV------------------AQTATAKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +  K+   + +  D     
Sbjct: 174 -MGIEAFHPEIAVITNLMPTHLDYHGSFEGYVAAKWAIQKNMTAKDFVVLNFNQDLAKD- 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            + +   A     S   +    +L+               E         +PG   V NA
Sbjct: 232 -LSQQTQATVVPFSTQEKVDGAYLEDGVLY-------FRGEAVMRADQIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++V             +    + +  L  
Sbjct: 284 LATIAVAKLRGIDNQTIQETLSAFGGVKHRLQYVAEIEGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +++   G DR      ++  I   L  + I+       E  E+++      
Sbjct: 344 F----DNANVILIAGGLDRGNEFDELVPDITG-LKKMVIL------GESAERVKRAANQA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+    D++++
Sbjct: 393 GVTYLDATDVADATRKAYELAEPGDIVLL 421


>gi|193301875|gb|ABV90250.2| sporulation protein A [Bacillus subtilis subsp. sadata]
          Length = 458

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 120/356 (33%), Gaps = 49/356 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++  + + ++ +     +   G   T++S    +             
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGTVASEVAYHADG---------- 161

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      +  E SS  L        +       N+   H+DYH T++ Y  AK ++
Sbjct: 162 --------DEWIVTELSSFQL--MGTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKV 211

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +      +  AI+  DD     + +                +  ++K    +        
Sbjct: 212 YLHQTASD-KAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIM-------F 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + E         LPG   + N L A  +    G  +  V + L     V  R ++V T +
Sbjct: 264 NGEAILPLEEVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTTVN 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RPIMGKIALDLA 410
                    A    +    L         + +++   G DR  G    +P M  +     
Sbjct: 324 GRKFYNDSKATNILATSKALSAFD-----KPVILLAGGLDRGNGFDDLKPYMKHV----- 373

Query: 411 DIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A++T     P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 374 -KAVLTFGQTAPKLE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|126461553|ref|YP_001042667.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|166224719|sp|A3PHS9|MURC_RHOS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126103217|gb|ABN75895.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 470

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 131/420 (31%), Gaps = 57/420 (13%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +V+SSA      +         P++     R+   L+              +A+ GT
Sbjct: 71  AAVVVISSAIKKGNPELEEARLRGLPVV-----RRAEMLAELMRMRSN------IAIAGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  +  + G     I     I ++  + R                      
Sbjct: 120 HGKTTTTTMVATLLDKGGFDPTVI-NGGVIHAYGSNARAGAGE----------------- 161

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA       +RL          TN+  +H+++  +  A        F   +P    
Sbjct: 162 WMVVEADESDGSFNRLPATI---AIVTNIDPEHMEHWGSFDALRK-GFYDFVTNIPFYGL 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
           A+   D A  + ++ R  +          Q     +                        
Sbjct: 218 AVCCTDHAEVQALVGRVTDRRIVTFGFNAQADVRAINLRYENGIAHFDVALQSEGAGHVI 277

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG+  V NAL A  +   +G+    + E L     V  RF  VG    G  I 
Sbjct: 278 EGMSLPMPGDHNVSNALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVG-EVGGVTII 336

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    +  +LK  R    GR+I V      R      +          AD+  + +
Sbjct: 337 DDYGHHPVEIAAVLKAARQAVKGRVIAV--HQPHRYSRLHSLFDDFCTCFNEADVVAIAE 394

Query: 418 DNPRSED--PEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ED  P   R +++ G+          I   + +E  R   E     D++V  G G
Sbjct: 395 VYAAGEDPIPGAGRDDLVAGLIAHGHRHARAILCEDDLE--RLVREQARPGDMVVCLGAG 452


>gi|156740113|ref|YP_001430242.1| FolC bifunctional protein [Roseiflexus castenholzii DSM 13941]
 gi|156231441|gb|ABU56224.1| FolC bifunctional protein [Roseiflexus castenholzii DSM 13941]
          Length = 454

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 14/157 (8%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  L  A    +   +         PGR E          I +D AH   S++ ++ ++
Sbjct: 286 AALLLRDAGLPITDAAIAAGLASARWPGRMEI---IDGSPPIVLDGAHNGESIQQLVVSL 342

Query: 377 RTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPR-----SEDPEKIR 429
             I  GR  ++VFG   D+D  +   M        D  ++T   +PR      E  ++  
Sbjct: 343 NRIFPGRRCVIVFGASRDKDLAR---MIPALAPAIDALVLTASRHPRALVALHELRQQFA 399

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +    P  I   +  EA+  A ++    D++ V G
Sbjct: 400 PLVRSDTPIDIVI-DPAEALARAQDLAAPNDLICVTG 435


>gi|228922665|ref|ZP_04085965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837094|gb|EEM82435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 450

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNQILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G  +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDIIESVDTLDEAVVKAYVHSKDGDVVLL 422


>gi|169824118|ref|YP_001691729.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
 gi|167830923|dbj|BAG07839.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
          Length = 461

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 14/278 (5%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +           N+  DH+D+++    +  A    + + L + S AII  DD   + ++ 
Sbjct: 175 ILNYYPSMAIILNIDEDHLDFYKDL-NHIVATFIGYMKNLDENSKAIINIDDKNCEPLLS 233

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNAL 316
                         +  +         +      +S E   KD +F   + G   +Y+A+
Sbjct: 234 HIKGEIITFGIENEKADYNVHDITFNENGNPSFVVSSEKFDKDEEFSLSIIGRHNIYDAV 293

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C    ID   + +++++ H +  R E +G   +G  +  DY H    ++  LK +
Sbjct: 294 AAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGF-YKGCEVKTDYGHHPTEIKNTLKAL 352

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPE------KI 428
                G+   VF       + K  ++   A      D  +VT+     E  +       +
Sbjct: 353 DEHKKGKFYCVF-QPHTYSRTKM-LLDDFANAFYDCDEVVVTEIYAAREKFDSSIHSTDL 410

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +++             EA       +   D+++  G
Sbjct: 411 VEKLVKNGVNAKYYKTFEEARDYIRSKVCDNDLVLTTG 448


>gi|56964122|ref|YP_175853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           clausii KSM-K16]
 gi|60390298|sp|Q5WFG8|MURD_BACSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56910365|dbj|BAD64892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus clausii
           KSM-K16]
          Length = 451

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 112/350 (32%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+TG++GK++  + V+++ + SG      G   T++S                   
Sbjct: 111 AEMVAITGSNGKTTTTTLVKEMLEHSGRKPLIAGNIGTVASEV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               ++    + +E SS  L     +  +     + N+   H+DYH T++ Y  AK R+ 
Sbjct: 154 -AQKAKAEHVIVLEVSSFQL--MGTNAFQPKVAVWLNIFDAHLDYHGTREDYIAAKARIA 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             + P +      ADD    + + R          +       ++K              
Sbjct: 211 ANMGPADYLVY-NADDPTVVQAIARIGATLVPFSRINVVEDGAYVKDGTIF-------FK 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         LPG   V N L A       G     +   L     V  R ++VG+   
Sbjct: 263 DEPILALADAVLPGAHNVENMLAATAAARLAGATVEQIRHVLSHFPGVKHRLQYVGSWEG 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    + +  L         + +V+   G DR      ++  +        +
Sbjct: 323 RQFYNDSKATNILATKAALSGFA-----KPVVLIAGGLDRGNDFDELLASL--KYVKAVV 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   E   K+ A         +      +A   A+ +    DV+++
Sbjct: 376 -----AYGETKSKLLALAAKANVQAVTAERVQDATEKAVALSQPGDVVLL 420


>gi|313888013|ref|ZP_07821691.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845968|gb|EFR33351.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 464

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 89/274 (32%), Gaps = 12/274 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+DY            + + + L +    +I  DD  +K ++   + 
Sbjct: 179 FPTTEIILNIDEDHLDYFDNIDHIIRT-FKGYVDNLRESDYVVINIDDENAKTLLPIENC 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                    +        +              + K       + G   + N+L A G  
Sbjct: 238 KFFTFGIKNHADLMAKNIEFNEEGFPTYDLYLRDEKVAHVELSVLGRHNILNSLAAIGAA 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              GI     +  L+    V  R E  G   +G ++  DYAH    ++  +  I+    G
Sbjct: 298 YVNGISIKDSIAGLKSYKGVERRLEVKGF-YKGAKVMDDYAHHPTEIKSSIHAIKNACKG 356

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED------PEKIRAEIIH 434
           ++  VF       + K  ++   A     +D+ I+TD     E        + +R  I  
Sbjct: 357 KLYTVF-QPHTFTRTK-LLLDAFANSFDESDVIIITDIYAAREKDYGDIHSKTLRNAIAD 414

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       + ++   E ++K D+ V  G G
Sbjct: 415 HRDNAFYISGFEDIVKFVKENISKDDIFVTMGAG 448


>gi|289209360|ref|YP_003461426.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. K90mix]
 gi|288944991|gb|ADC72690.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. K90mix]
          Length = 478

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 140/418 (33%), Gaps = 53/418 (12%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A+ +VVSSA    +    A  R   PI+     R+   L+      YG      +AV GT
Sbjct: 74  ADVLVVSSAIDPSNPEVQAARRRGIPIV-----RRAEMLAELMRFRYG------IAVAGT 122

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +   +G+    +     ++S A  + L     +      S  S     
Sbjct: 123 HGKTTTTSLVASVLAEAGMDPTFV-IGGRLNSTASHSNLGAGDYLVAEADESDASFLH-- 179

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+  +        A    F   LP    
Sbjct: 180 ------------------LQPMISIVTNIDADHLGTYGNDFGNLRATFLEFLHHLPFYGI 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDF 302
           A++ ADD   +++         R+         +    V     +    + + G+  F  
Sbjct: 222 AVLCADDPQVRDLYPELERP--RLTYGIEAQADVRALNVRQEGVRMFFDLKLPGQAAFPV 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--TNSRGGRIYV 360
              LPG   V NAL AA +   + +    +   LE+   +  RF+     T      +  
Sbjct: 280 TLNLPGRHNVLNALAAAAVAHELEVAPEAIQAALERFQGIGRRFQVQELETAQGPLTLVD 339

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
           DY H    +E      R      R I VF     R    R +    A  L+  D+ I+ +
Sbjct: 340 DYGHHPREIEATQAAARDAWPDRRRITVF--QPHRYTRTRDLFEDFAEALSETDVLILLE 397

Query: 418 DNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             P  E+P        +   I + G    +   +  +       ML   DV++  G G
Sbjct: 398 VYPAGEEPIPSADGRSLARAIRLRGQVEPVFVEHAADVAEVLSGMLKPNDVVITQGAG 455


>gi|195977729|ref|YP_002122973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|226722945|sp|B4U1U3|MURD_STREM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195974434|gb|ACG61960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 452

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 136/417 (32%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFAS 107
             QA+  +G   I  S    L D         P +  DN     +             A 
Sbjct: 48  AAQALLEEGIRVICGSHPLELLDEDFYCMVKNPGIRYDNPMVVCALDKAISILTEVELAY 107

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +      S+   G     +S            
Sbjct: 108 LVSEAP---IIGITGSNGKTTTTTMIADVLNAGNQSALLAGNIGFPASEV---------- 154

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                     ++     + +E SS  L     +  +      TNL   H+DYH + + Y 
Sbjct: 155 --------AQAATAKDILVMELSSFQLL--GTEQFQPHIAVITNLVPTHLDYHGSFEDY- 203

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            A     +  +  +   ++ AD    K + ++   +     +                  
Sbjct: 204 IAAKWRIQHRMTDKDYLVLNADQELVKSLAQKTKASPVFFSTKEKVDGAYLADGYLYFKE 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +Q ++ +           LPG   + NAL    +    GI + ++ + L     V  R +
Sbjct: 264 EQVMSAA--------ELGLPGRHNIENALATIAVAKLRGISNQVISKTLSHFSGVKHRLQ 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VGT ++        +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 316 LVGTLNQVTFYNDSKSTN---ILACQKALSGFDNSRVILI-AGGLDRGNEFDELVPDLVG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + ++       E  E+++         +++  +   A + A E     D++++
Sbjct: 372 -LKKMILL------GESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKPGDIILL 421


>gi|298207886|ref|YP_003716065.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850527|gb|EAP88395.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/401 (14%), Positives = 124/401 (30%), Gaps = 50/401 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ ++ S     +        +  + +V         FAS         I+ +TG++GK+
Sbjct: 64  ADVVMKSPGIPDKAPIIKQLKDNKVAIVSEI-----EFASEFTN---ATIIGITGSNGKT 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V  +   I +  GL++   G                            ++     +  +
Sbjct: 116 TVTRWTHHILKEGGLNASVGGNIGDS-------------------FAKQVALSPSENYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  LD   +   +      TN+  DH+D +    + + A           +   I  
Sbjct: 157 ELSSFQLDD--IKNFRPHIAIITNITPDHLDRYDYDFSKYVASKFRITMNQTNDDYLIYD 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           AD+    + ++        V     +                ++ I+++           
Sbjct: 215 ADNEAINDYLEAHTIQPKLVPFSTTKSLKYGAY-----IEHNELIINIDENKIHMPIDSL 269

Query: 308 GEFQVYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                +N   A     A  +       + E L     V  R E V   +    I    A 
Sbjct: 270 ALKGTHNQKNAMASSSAAKMLKIRKQTIRESLANFQGVEHRLEHVLKINNVNYINDSKAT 329

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSE 423
               +      + +++S  I +V G     D      +  +  +     I +  DN    
Sbjct: 330 N---VNATFYALESMSSDTIWIVGGVDKGNDYS---QLNALVNEKVKAIICLGVDN---- 379

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +KI     + +   +E  +  EAI+ A ++  + D +++
Sbjct: 380 --QKILKAFNNCVDIMVETQSMSEAIKIAYKIGERGDAVLL 418


>gi|260551075|ref|ZP_05825279.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
 gi|260405842|gb|EEW99330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
          Length = 455

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 125/408 (30%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 89  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 117 ITGSNAKSTVTTLMGLMAKDAGKKVAIGGNLGRP-------------ALDLLKDQPEL-- 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 162 -----LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLEYHQAK----HRIFQ 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+         +    +    
Sbjct: 211 GVKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGILRDADGTLWLARGLQRLIKSS 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             ++    G   V NAL    L  AIG+    +LE L+    +  R E+V T        
Sbjct: 271 DLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKHFKGLEHRCEYVKTVHDVRYYN 327

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 328 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFTPLRSSI-EKYAKVVVLI 385

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+         +DV+++
Sbjct: 386 -----GEDAPVIEQAI-QGATKILHAATLKEAVEICQRETQAEDVVLL 427


>gi|239832308|ref|ZP_04680637.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
 gi|239824575|gb|EEQ96143.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
          Length = 468

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 93/282 (32%), Gaps = 18/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +          Q +   +               +       +  D   P+PG+  V NA 
Sbjct: 232 DRRIITYGQNPQAEVRFVNHRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGQHNVSNAT 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI +  +   L     V  RF   G    G  I+ DY H    +  +LK  
Sbjct: 292 AAIAVAHELGISADDIRRGLGSFGGVKRRFTHTG-TWNGVEIFDDYGHHPVEIRAVLKAA 350

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R    GR+I +      R      +  + A     AD  IV       EDP      E +
Sbjct: 351 REAAKGRVIAIV--QPHRFTRLASLFDEFAACFNDADTVIVAPVYTAGEDPIEGVNSETL 408

Query: 429 RAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
            + I           N  EA+      +    D +V  G G+
Sbjct: 409 VSRIKTAGHRDARYANGPEALAPLVASIAEPGDFVVCLGAGN 450


>gi|25010591|ref|NP_734986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae NEM316]
 gi|77413561|ref|ZP_00789749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
 gi|30316027|sp|Q8E6P1|MURD_STRA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23094944|emb|CAD46166.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160390|gb|EAO71513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
          Length = 451

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 131/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         ++ +TG++GK++  + + +
Sbjct: 83  PYNNPMVKKALEKQIPVL----TEVELAYLVSE------SQLIGITGSNGKTTTTTMIAE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLNAGGQRGLLAGNIGFPASEVV------------------QAADDKDILVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +   +      TNL   H+DYH + + Y  AK  +  ++   +   + +       +
Sbjct: 174 -MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQ--GISK 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            + +   A     S   +    +++     +  + + +  +         +PG   V NA
Sbjct: 231 ELAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMLVDDIG-------VPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GI + ++ E L     V  R + +G            +     +    K 
Sbjct: 284 LATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + ++       E   +++      
Sbjct: 341 LSGFDNTKVILI-AGGLDRGNEFDELIPDITG-LKHMVVL------GESASRVKRAAQKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +  +A+  A E+  + DV+++
Sbjct: 393 GVTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|319949799|ref|ZP_08023822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dietzia cinnamea P4]
 gi|319436539|gb|EFV91636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dietzia cinnamea P4]
          Length = 57

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 454 EMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493
           +     DV+V+AGKGHET   V  G      D     E L
Sbjct: 1   DWARAGDVVVIAGKGHETGQEVA-GVVHPFDDRARAAEEL 39


>gi|319762220|ref|YP_004126157.1| folc bifunctional protein [Alicycliphilus denitrificans BC]
 gi|317116781|gb|ADU99269.1| FolC bifunctional protein [Alicycliphilus denitrificans BC]
          Length = 450

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 115/391 (29%), Gaps = 31/391 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A RL  +    ++ V GT+GK S  + ++ +  ++G  +   G    +    +    
Sbjct: 41  GEVARRLALRFDCPVITVAGTNGKGSTCAMIEAVAMQAGYRTGVYGSPHLVRFEERCRIR 100

Query: 163 T-TPSPIYLAKALSYLSSQGVTHVSVEAS---SHGLDQHRLDGIKLIAGSFTNLGRDHID 218
             T     L      +         V  +      L   RL  + L+  +   +G     
Sbjct: 101 GETVDAASLVPHFEAVERARTQGDEVSLTYFEFTTLAILRLMSMSLLDVAILEVGLGGRL 160

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                     A +   +    +       A       +M R          V  Q    H
Sbjct: 161 DATNVIDADCAVITSVDIDHVEFLGPDREAIGREKAGIM-RTGRPVVVSDPVPPQSVIDH 219

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +++ A   +     +  G    + +          A  A      +   +  +      
Sbjct: 220 AREIGADLWRFGHDFNYSGDKQQWAWAGRSRRYAGLAYPALRGANQLINAAGALAALEAL 279

Query: 339 LHVVP----------GRFE---FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRI 384
              +P           R E             + +D AH  +++  +  N+  +      
Sbjct: 280 RARLPITAQAVRLGLARVELPGRFQIVPGQPTLVLDVAHNPHAVAALTANLDAMGYFPTT 339

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA-----EIIHGIPG 438
             VFG   D+D      M      + D    TD   PR+E    ++      +++ G   
Sbjct: 340 HAVFGAMADKDL---APMLAKVGPIIDRWYFTDLPTPRAESAAALQQKWNALQMVAGGRR 396

Query: 439 FIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
            +      +  EA+R A+E  +  D +VV G
Sbjct: 397 PVSTSLHTSPEEALRAAVEAADPADRIVVFG 427


>gi|217076877|ref|YP_002334593.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
 gi|217036730|gb|ACJ75252.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
          Length = 514

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 111/363 (30%), Gaps = 21/363 (5%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A R   +     +AVTG+ GK+S   ++  +      S       +T     +  R    
Sbjct: 158 AKRKISRLNPLTVAVTGSYGKTSTKYYLHHLVAEHYKSLMTPESYNTTMGITKTIREKLD 217

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               +       +        +E             IK      T++G  H +  ++   
Sbjct: 218 KSHEVFIVELAENDNYGYSKLLEL------------IKPQISILTSIGIQHFEEFESLDN 265

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
                     +    +       D+     +            ++  +     ++++   
Sbjct: 266 IIQNFKNFILDERSGKKIIANIDDENIKNVLENIDTKKEIITCAINEKNAQYKVEELKIS 325

Query: 286 HNKQQV-TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            +      I+   + F F   + G   + N L+A      + +    V+E  + +     
Sbjct: 326 KDGANFAIITPNNQKFYFETNVYGYENIRNLLLAIVASFELKVPVEEVIERAKNIVKPKH 385

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPI 401
           R E V  ++    I   +       +M L+ +    + R I+V   F   G+++  +   
Sbjct: 386 RLEIVRNDTI-TVIDDTFNSNPKGFKMALEYLALFENKRKILVTPGFVELGEKEDEEHYK 444

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEK-IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +GK      D+  +  +  R+E   K +      G        +  E I      L   D
Sbjct: 445 IGKEIAKYVDVVFLIGEK-RTEKIYKGLIDSNFEG--KIFIVEDLNEVIEKFKTFLQPGD 501

Query: 461 VLV 463
           V++
Sbjct: 502 VVL 504


>gi|239814065|ref|YP_002942975.1| cyanophycin synthetase [Variovorax paradoxus S110]
 gi|239800642|gb|ACS17709.1| cyanophycin synthetase [Variovorax paradoxus S110]
          Length = 855

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 114/381 (29%), Gaps = 24/381 (6%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI--SSFAQDNRL 162
           FA    G+ P  ++AVTGT+GK++ A  +  +   SGL +                    
Sbjct: 461 FAHGDDGRIP--VVAVTGTNGKTTTARLINHLLASSGLRTGMTNTDGVYVDGRQTDSGDC 518

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-------GIKLIAGSFTNLGRD 215
           + P           + +             GL   R         G     G       +
Sbjct: 519 SGPKSARNVLMHPDVDAAVFEVARGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYITTVE 578

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
            +   +       A            + A + A                          +
Sbjct: 579 DLAVLKRVIVRNVAPDGYAVLNAADVNVAAMAAGCPGHVIFFTADRQHPVMATHRAQGKR 638

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            +++ +   +  +      +  +D          FQV N + A     A+G+D   +   
Sbjct: 639 TVYVDQDTLVAAEGSWRERIALRDVPITRGGTIGFQVDNVMAAVAAAWAVGLDWDTIRSG 698

Query: 336 LEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           L          PGRF     + RG  +  DY H ++++  ++  + T+ + +  VV    
Sbjct: 699 LASFLNDAAGVPGRFNV--MDYRGATVIADYGHNTDAMRALVSAVDTMPANKRSVVISGA 756

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNP-RSE---DPEKIRAEIIHGIPGFIEKGN-RI 446
           GDR          I     D  I+  D   R     +   +  + + G          R 
Sbjct: 757 GDRRDSDIRDQTAILGQAFDDVILYQDAAQRGRADGEVMALLRQGLQGAARTRYIDEIRG 816

Query: 447 E--AIRTAIEMLNKQDVLVVA 465
           E  AI TA+  L   D+ ++ 
Sbjct: 817 EFVAIDTALARLQPGDLSLIL 837


>gi|330825959|ref|YP_004389262.1| FolC bifunctional protein [Alicycliphilus denitrificans K601]
 gi|329311331|gb|AEB85746.1| FolC bifunctional protein [Alicycliphilus denitrificans K601]
          Length = 450

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 115/391 (29%), Gaps = 31/391 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A RL  +    ++ V GT+GK S  + ++ +  ++G  +   G    +    +    
Sbjct: 41  GEVARRLALRFDCPVITVAGTNGKGSTCAMIEAVAMQAGYRTGVYGSPHLVRFEERCRIR 100

Query: 163 T-TPSPIYLAKALSYLSSQGVTHVSVEAS---SHGLDQHRLDGIKLIAGSFTNLGRDHID 218
             T     L      +         V  +      L   RL  + L+  +   +G     
Sbjct: 101 GETVDAASLVPHFEAVERARTQGDEVSLTYFEFTTLAILRLMSMSLLDVAILEVGLGGRL 160

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
                     A +   +    +       A       +M R          V  Q    H
Sbjct: 161 DATNVIDADCAVITSVDIDHVEFLGPDREAIGREKAGIM-RTGRPVVVSDPVPPQSVIDH 219

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            +++ A   +     +  G    + +          A  A      +   +  +      
Sbjct: 220 AREIGADLWRFGHDFNYSGDKQQWAWAGRSRRYAGLAYPALRGANQLINAAGALAALEAL 279

Query: 339 LHVVP----------GRFE---FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRI 384
              +P           R E             + +D AH  +++  +  N+  +      
Sbjct: 280 RARLPITAQAVRLGLARVELPGRFQIVPGQPTLVLDVAHNPHAVAALTANLDAMGYFPTT 339

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA-----EIIHGIPG 438
             VFG   D+D      M      + D    TD   PR+E    ++      +++ G   
Sbjct: 340 HAVFGAMADKDL---APMLAKVGPIIDRWYFTDLPTPRAESAAALQQKWNALQMVAGGRR 396

Query: 439 FIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
            +      +  EA+R A+E  +  D +VV G
Sbjct: 397 PVSTSLHTSPEEALRAAVEAADPADRIVVFG 427


>gi|170761088|ref|YP_001788857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226711901|sp|B1KTB9|MURD_CLOBM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169408077|gb|ACA56488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 458

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 116/360 (32%), Gaps = 47/360 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD             G    ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSDNLLVLNKDDD----------LTNGMENEALGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+      +          L+AA   +   +    +         V  R E
Sbjct: 260 SNNKLTIQGKEICDSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       + +++   G D+     P+    A 
Sbjct: 320 FIREVNEVKYYNDSIASSPSRTLAGLNSFE-----KPVILIAGGYDKKIPFEPL----AE 370

Query: 408 DLADIA---IVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              D     I+  D  N      EK+ +         +   +  EA++ A  M  K D++
Sbjct: 371 GGYDKIKILILMGDTKNKIKSAFEKVISH-KKCEMEIVIVNSMEEAVKVADNMAEKGDII 429


>gi|186477420|ref|YP_001858890.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phymatum
           STM815]
 gi|229486477|sp|B2JHF9|MURC_BURP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|184193879|gb|ACC71844.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia phymatum STM815]
          Length = 464

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 135/428 (31%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +       +  I +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARHRRIPIVP--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++  DD   KE++        R        +   +             +
Sbjct: 203 FTHRLPFYGIAVLCVDDPNVKEILPFVSKPIIRYGFAPD-AQVRAVNVEAREGKMHFTAM 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +    D +  LPG   V NAL A  +   + +  A +   L   + V  RF+  G  +
Sbjct: 262 REDAPPIDIVLNLPGLHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVT 321

Query: 354 RG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R     +  +V      R    R         L
Sbjct: 322 VTSGGAYTLVDDYGHHPVEMAATIAAARGAFPDKR-LVLAFQPHRFTRTRDCFEDFVKVL 380

Query: 410 A--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQD 460
           +  D  ++T+     E P        +   I           + ++ +  A+  ++   D
Sbjct: 381 STVDALVLTEVYSAGEAPIVAADGRSLTRAIRVAGKVEPVFVDTVDEVPDALGAIVRDGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|77919798|ref|YP_357613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
 gi|122063252|sp|Q3A2G4|MURD_PELCD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77545881|gb|ABA89443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
          Length = 450

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 132/418 (31%), Gaps = 55/418 (13%)

Query: 51  GNKED--GHLFIPQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G + D  GH     A+  GA+ I +S      +   +  +++  P+       +     A
Sbjct: 53  GLRFDCGGHD---AALLAGADLIAISPGIPLTVPAVAGALQAGVPV-------QGEIEIA 102

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +R   +    ++A+TGT+GKS+    + +I +  G  +F  G   T              
Sbjct: 103 AR---ELSAPMVAITGTNGKSTTTCLMGEIMRCWGRRAFVGGNLGTPLIE---------- 149

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                       S     +  E SS  L+   +D  +   G   NL  DH+D +     Y
Sbjct: 150 ---------ATRSTDWDWIVAEISSFQLEA--IDTFRPRYGMLLNLTADHLDRYAGMGEY 198

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK+RLFE +  ++  A++ ADDA                 S     + +       + 
Sbjct: 199 VAAKLRLFENMTAED-VAVVNADDALVVRSTTDLPCRKIPFSSSRVLDEGMGFDGQHIVW 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                    +  D        G   V N + A    +  G  + +  + +     +  R 
Sbjct: 258 RHAGRQERFDVADLQLK----GLHNVENVMAALIPPLMEGCPTDIAWKAVCGFSGLDHRM 313

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             V                  S+   L  ++       + +   G D+     P+ G I 
Sbjct: 314 VLVREIDGVSWYDDSKGTNVGSVVKSLAGLQG-----PVTLIAGGKDKGGDYAPLAGLIG 368

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  I+                   G+   +   +   A++ A ++      +++
Sbjct: 369 EK-VEHLILIGQ------AADRMQAAFQGMTTILRADSLEAAVQQAQQVTMAGGTVLL 419


>gi|85858177|ref|YP_460379.1| folylpolyglutamate synthase / dihydrofolate synthase [Syntrophus
           aciditrophicus SB]
 gi|85721268|gb|ABC76211.1| folylpolyglutamate synthase / dihydrofolate synthase [Syntrophus
           aciditrophicus SB]
          Length = 465

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/430 (13%), Positives = 131/430 (30%), Gaps = 42/430 (9%)

Query: 68  AEAIVVS-------SAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILA 119
           A+ IV              +D    +  N  I+ +  +  + L         K+P  ++ 
Sbjct: 17  AKNIVCEVIINCTMENVQKEDPQRLLDLNCNIIRLGLDPIRHLLERMENPQLKYPAVLI- 75

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
             GT+GK S A+ +  I + SG            S   +     +       +    +  
Sbjct: 76  -GGTNGKGSTAAILSCILKESGYKVGLYTSPHLTSICERIRINGSLISEERMQDCFGMIQ 134

Query: 180 -----QGVTHVSVEASSHGLDQ--------------HRLDGIKLIAGSFTNLGRDHIDYH 220
                       + AS++                   RLD   ++    + +   H+++ 
Sbjct: 135 SSLEEPLTYFEVLTASAYLYFYQEKVDIAVLEVGMGGRLDATNVVTPLVSVISNVHLEHQ 194

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +    +          ++ + S  +         +++          L    +   + +K
Sbjct: 195 EYLGRHLRDIAAEKAGIIKENSVCVTAVTQKAVLDLLSETCRQKEATLYRLGKDIRVRVK 254

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                  +       + K             +  A         I ++   +L  +    
Sbjct: 255 GDGTFSYQGIAIKLDDLKCTLSGAHQIKNAALALAAAEVVTTKGIRVNRQAMLSGVACAS 314

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKR 399
              GR E +        + VD AH   +  ++ + +R        +++FG  GD++    
Sbjct: 315 WD-GRLEILQNTPT---VLVDGAHNPAAANVLCQALRNRNADDHRLLIFGALGDKNY--- 367

Query: 400 PIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            +M K  L   D  I T   P++E   D   +     H         +  EA++ A+ + 
Sbjct: 368 RLMLKKLLPFFDHVIFTK--PKTERAVDVADLIRAARHYDRSAEAIEDSCEALQRALCLT 425

Query: 457 NKQDVLVVAG 466
            K D++ + G
Sbjct: 426 GKNDMICITG 435


>gi|320160936|ref|YP_004174160.1| folylpolyglutamate synthetase [Anaerolinea thermophila UNI-1]
 gi|319994789|dbj|BAJ63560.1| folylpolyglutamate synthetase [Anaerolinea thermophila UNI-1]
          Length = 466

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 12/212 (5%)

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            H A       G         +   +++  +     + +      PL G  QV NA  A 
Sbjct: 234 FHFAPWSHDLEGQTLFVWKEDEQDMVNSFIESGAHTDWEPLRLRIPLLGYHQVQNAATAY 293

Query: 320 GLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                        S   ++        PGRFE +   +R   + VD AH  +S   +   
Sbjct: 294 AALQIGKTCGVPVSDAAIQKGFSTVYWPGRFEIL---NRNPMLIVDSAHNRDSALKLRLT 350

Query: 376 IRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEII 433
           +     G+  I++FG   D+D      M    L      I T   +PR+ D + +   I 
Sbjct: 351 LDDYLPGKPVILLFGVSEDKDI---AGMLGELLPRVKRVITTQSVHPRAMDAQTLVEWIH 407

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                        +A+ +A+E+  K + +++A
Sbjct: 408 RYGVRAEAIVPVEKALASAMEIAQKSEAVILA 439


>gi|268610479|ref|ZP_06144206.1| UDP-N-acetylmuramyl pentapeptide synthase [Ruminococcus
           flavefaciens FD-1]
          Length = 535

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 115/349 (32%), Gaps = 28/349 (8%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A++V         +  I ++     +++ ++ L             + + +TG+ GK+S+
Sbjct: 155 AVLV---PLSNIINKPIENSINKWYINDAKRILGEC-------PTLHKVGITGSYGKTSM 204

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             ++ ++              S  ++        TP  + +        +       + A
Sbjct: 205 KFYLDEL------------LNSKYNTLKTPESFNTPMGVTITIRNYLKPTHEYFICEMGA 252

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 +   D  +   G  T++G  H++   + +   N K  L + +  K        D
Sbjct: 253 RRVHEIKELCDIAEPHDGIITSVGPQHLETFGSIENVLNTKFELADCVKAKGGKIYFNGD 312

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPG 308
           +     + K+A      +L    +G       +       + T++  G +   F   L G
Sbjct: 313 NEL---IRKKAPEYEGAILYGLQEGNDYRATDISVSSRGTEFTVTAPGGESHRFSTKLLG 369

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  V N L A       GI    +   ++++  VP R + +   +    I   Y    + 
Sbjct: 370 EHNVQNVLGAIAYAHGTGIPLEKLTLPVKRIQAVPHRLQLLDKGNGLTFIDDAYNSNPSG 429

Query: 369 LEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMGKIALDLADIAIV 415
               L  +    + RI+V       G + +      G+ A    D  ++
Sbjct: 430 CRAALAVLELFDACRILVTPGMVELGAKQEELNFEFGQEAAKSCDYIVL 478


>gi|116624736|ref|YP_826892.1| FolC bifunctional protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227898|gb|ABJ86607.1| FolC bifunctional protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 422

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 11/158 (6%)

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
                   A + +     S   +E        PGR E V   S    I +D AH      
Sbjct: 260 HQVENAATAAIALTRLGVSDHSIETGIAQTRWPGRLERV---SEHPEIILDGAHNPAGAR 316

Query: 371 MILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI 428
            +   I    +GR + +++G   D+       +  I   LA   I+T     R+  PE I
Sbjct: 317 ALAAYIERFYAGRRVRLIYGAMRDKAID---EIAGILFPLAHQVILTAPRQARALAPEAI 373

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R   I   P      +  +AI    +     D + + G
Sbjct: 374 RE--IADHPDVQVAPDLAQAIALLCDAA-SNDAVFITG 408


>gi|260910912|ref|ZP_05917554.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634969|gb|EEX53017.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 463

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 128/421 (30%), Gaps = 53/421 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IPQA       +VV +    +D    +        +    + L      L G      L 
Sbjct: 63  IPQACKNAKSCLVVYTPAIPEDHKELVYFRENGFEIQKRAQVLGTLTRALKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
             GT  K++ +     I  +S            IS     N + +P   Y+         
Sbjct: 117 FAGTHAKTTTSCMCAHIMHQSHPDCNAF--LGGISKNYGTNYILSPQSEYVVIEADEFDR 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                 ++      T+   DH+D + T++AY  +       +  
Sbjct: 175 SFHW------------------LRPWMSVITSTDPDHLDIYGTKEAYMESFRHYTTLIQE 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +  I           +K     G +V          H + V   +           + 
Sbjct: 217 GGALIIKKGL------ALKPNVKPGVKVYQYSLNEGDFHAENVKIDNGNITFDFVSPIES 270

Query: 300 FDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    + NA+ A  +    G ++  +   ++  H V  RF+F    +     
Sbjct: 271 VKNVTLGHPVPINIENAVAAMAMAQLNGCNAEELRYGIKTYHGVDRRFDF-KIKTPNLVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-VVFG-CGGDRDQGKRPIMGKIALDLADIAIVT 416
             DYAH  N +    ++IR +   R I  VF      R +       K AL L +  I+ 
Sbjct: 330 LSDYAHHPNEILQSARSIRQLYKDRKITAVFQPHLYTRTRDFYKEFAK-ALSLLNEVILC 388

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-------AIEMLNKQ--DVLVVAGK 467
           D  P  E P       I G+   +   N  + +          +++  ++  DVLV  G 
Sbjct: 389 DIYPAREQP-------IKGVSSKLIYDNLEKGVEKSMISKEDVLKLARERDFDVLVFLGA 441

Query: 468 G 468
           G
Sbjct: 442 G 442


>gi|218961094|ref|YP_001740869.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729751|emb|CAO80663.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 464

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 136/412 (33%), Gaps = 44/412 (10%)

Query: 68  AEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V SSA +  +           P++        ++  +           + + GT G
Sbjct: 65  ADVVVKSSAINDDNPEIVSAYEMKIPVIRRAELLAEITRMSF---------SIGIAGTHG 115

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    + + +GL    I     + +F  +N + +   I +       S       
Sbjct: 116 KTTSTSMAGSVLESAGLEPTII-VGGKVKNFGSNNVMGSGKYIVVEADEYDHSFLT---- 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  DH+D ++       +    +   +P     I
Sbjct: 171 ----------------LTPCIAGITNVDADHLDCYRNLDEIK-SSFIEYANKVPFFGSVI 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              DD   + ++   H                    +   ++   +    + K       
Sbjct: 214 ACLDDPGVQAILPFIHKKIVTYGFSRQADVQARDIDMQGFNSSYDLLFK-DYKLGRISLK 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G+  + N+L+AA + + + I    + + L K   V  RF+  G  + G  +Y DYAH 
Sbjct: 273 VTGKHNIQNSLLAASIGLELDIPFPAIQDGLGKFSGVYRRFDLKG-EAGGITVYDDYAHH 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +   L+  +     RI+ +F      R +      GK      D  I+    P  E 
Sbjct: 332 PTEIIATLEGFKDSAKRRIVALFQPHLYSRTRDFYEEFGKSFFS-CDCLILAPIYPAREQ 390

Query: 425 P------EKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P      + I  A I  G        +  E +   + +L + D+L+  G G+
Sbjct: 391 PIPGISSKLIADAAIQSGHHNVHLINSNSEIVSQTLALLKEGDILITMGAGN 442


>gi|90407785|ref|ZP_01215963.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
 gi|90311145|gb|EAS39252.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
          Length = 487

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 140/422 (33%), Gaps = 56/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA  +VVS+A    +          I VV   R+   L+      +G      +A++GT 
Sbjct: 78  GASVVVVSTAIDANNPELLAAEQARIPVV---RRAEMLAELMRYRHG------IAISGTH 128

Query: 125 GKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S +  I  Q     +F IG    ++  ++    +R                   
Sbjct: 129 GKTTTTSLIASIFGQAKLDPTFVIGGLLNSAGTNAKLGQSRYLIAEADE----------- 177

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                     S     H    ++ +    TN+  DH+D +Q            F + LP 
Sbjct: 178 ----------SDASFLH----LQPMISVVTNIEADHLDTYQGDFEILKDTFVRFIQNLPF 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  DD+  + ++ R                 I         + +     V     
Sbjct: 224 YGTAVVCLDDSVVESLIPRFARQCVTYGFHEQADIRISNFS-QLRSHCEFDLHRVNKDVL 282

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-- 358
                LPG+    NA  A  + +   ID   ++E L     +  RFE  G  + G     
Sbjct: 283 KVQLNLPGKHNALNAAAAIAVAMEENIDDEFIIEALHNFEGIGRRFEQYGEFATGRGNVL 342

Query: 359 -YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIV 415
              DY H    ++  +  +R     +  +V      R    R +  + A  LA  D  ++
Sbjct: 343 LVDDYGHHPTEVQATINAVRAGWPEKR-LVMAYQPHRYTRTRDLYEEFAHVLAQVDQLLL 401

Query: 416 TDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGK 467
            D     E P        +   I +      I   +  EA+  A+ E++   D+++  G 
Sbjct: 402 LDVYSAGEAPIAGADSRSLCRTIRLQSNKEPIFVPSP-EALPAALAEIMEDGDLVLTQGA 460

Query: 468 GH 469
           G+
Sbjct: 461 GN 462


>gi|321315285|ref|YP_004207572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis BSn5]
 gi|320021559|gb|ADV96545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis BSn5]
          Length = 451

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 120/356 (33%), Gaps = 49/356 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++  + + ++ +     +   G   T++S    +             
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGTVASEVAYHADG---------- 161

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      +  E SS  L        +       N+   H+DYH T++ Y  AK ++
Sbjct: 162 --------DEWIVTELSSFQL--MGTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKV 211

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +      +  AI+  DD     + +                +  ++K    +        
Sbjct: 212 YLHQTASD-KAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIM-------F 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + E         LPG   + N L A  +    G  +  V + L     V  R ++V T +
Sbjct: 264 NGEAILPLEEVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTTVN 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RPIMGKIALDLA 410
                    A    +    L         + +++   G DR  G    +P M  +     
Sbjct: 324 GRKFYNDSKATNILATSKALSAFD-----KPVILLAGGLDRGNGFDDLKPYMKHV----- 373

Query: 411 DIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A++T     P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 374 -KAVLTFGQTAPKLE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|322372684|ref|ZP_08047220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
 gi|321277726|gb|EFX54795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
          Length = 450

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 140/416 (33%), Gaps = 55/416 (13%)

Query: 61  PQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASR 108
            QA+  +G + +       L D +  +    P +  DN     +             A  
Sbjct: 49  AQALLEEGIKVVCGGHPLELLDENFELMVKNPGIRYDNPMVARALEKGIPVWTEVELAYL 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +       I+ +TG++GK++  + +  +    G S    G     +S      +T    +
Sbjct: 109 VSEAP---IIGITGSNGKTTTTTMIADVLNHGGKSGVLSGNIGFPASEVA-QSVTAQDTL 164

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L    +D         TNL   HIDYH + +AY  
Sbjct: 165 -----------------VMELSSFQL--MGIDSFHPHIAVITNLMPTHIDYHGSFEAYVA 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +   +   +   + +  D     + K         +      + +    +      
Sbjct: 206 AKWNIQNRMTSDDFIILNFNQD-----LAKELATKTKAQVVPFSTVEKVDGAYLENGGLY 260

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  + ++  +      +PG   V NAL    +    GI +  + E L     V  R +F
Sbjct: 261 YKGELIMKADEI----GVPGSHNVENALATIAVSKLSGISNQAIKETLASFGGVKHRLQF 316

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T +         +     +    K +    + ++I++   G DR      ++  I   
Sbjct: 317 VDTINDVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFDELVPDITGV 372

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + I+ +  PR       RA    G+  +++  +  +A R A +  +  DV+++
Sbjct: 373 K-KMIILGESAPR-----VKRAAEKAGVS-YLDAKDVADATRIAFDQASAGDVVLL 421


>gi|284166542|ref|YP_003404821.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
 gi|284016197|gb|ADB62148.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
          Length = 847

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 13/192 (6%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                  H +  VT+       +    L G  Q  NA +AA L   +   S   L    +
Sbjct: 231 AYGGRVNHTEAAVTVEHGDWTLENRLSLLGAHQAENAGIAAVLARQVADISDDDLARGLR 290

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGRFE +        I +D AH   + E +   + T     + +VFG   D+D   
Sbjct: 291 SAHWPGRFEVL---ETTPLIVLDGAHNPGACEPLAATLDTYDYDDLHLVFGAMHDKD--- 344

Query: 399 RPIMGKIALDLADIAIVTDDNP-RSED---PEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              M        D+ + T+    R+ED      +  ++  G+          +A+ TA+ 
Sbjct: 345 HREMAATL-PTPDVVVATEPPLDRAEDRDVLASVFEDV--GVADVRTSATVQDALETALR 401

Query: 455 MLNKQDVLVVAG 466
             +  D ++V G
Sbjct: 402 EADDNDCVLVTG 413


>gi|291544563|emb|CBL17672.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           18P13]
          Length = 462

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 110/366 (30%), Gaps = 54/366 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I  VTG+ GK++  + + ++  ++G   ++ G          +      + +
Sbjct: 110 FFDLCPCRIYGVTGSDGKTTTTTLISEMLAKTGRRVYKGGNIGKALLPLIETIREEDAAV 169

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             VE SS  L   R           TN+  +H+D H T + Y  
Sbjct: 170 ------------------VELSSFQLISMRRS---PDVAVITNISPNHLDVHGTMEEYIG 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K+ L           +    D      +           +   + +             
Sbjct: 209 CKVNLIAHQNAYSKTVL--NLDNAQTAALAEQVRGRLLWFTRQQKPERGTFLDAEGWLCY 266

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +   +      +    +PG   V N L A        + +  ++E  +    V  R EF
Sbjct: 267 AEAGKTQRIVRAED-IRIPGLHNVENYLAAIAAVWG-EVPAETIVEVAKTFGGVEHRIEF 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +   +   L++       + ++V   G D+     P M +    
Sbjct: 325 VRELDGVKWYNDSIATSPTRVLAGLRSF-----NQRLIVIAGGYDKKIPFEP-MAETVNQ 378

Query: 409 LADIAI------------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              I I            VT+D   S DP K+           +   +  EA++ A E+ 
Sbjct: 379 RVKILILMGVTAPKIEKAVTEDP--SYDPAKL---------QIVHAASMEEAVQKAKELA 427

Query: 457 NKQDVL 462
              D++
Sbjct: 428 QPGDIV 433


>gi|302561123|ref|ZP_07313465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
 gi|302478741|gb|EFL41834.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
          Length = 470

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 130/413 (31%), Gaps = 58/413 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV +  +              + V  +        A RL G      LAVTGT+GK++ 
Sbjct: 71  LIVTAPGWRPDKPLFAAADRAGVPVWGDV-----ELAWRLRGPDAAPWLAVTGTNGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G                     ++   + L  +    ++VE 
Sbjct: 126 VQMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGEERYDVLAVEL 167

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +    A  R    +      A +Y  
Sbjct: 168 SSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSME----AYARDKGRVYEGNRVACVYNA 221

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----- 304
           DA  K   +               G  +       +   + + +     +          
Sbjct: 222 DATGKPSTEDLVREADVEEGCRAVGFTLGAPGPSQLGVVEGILVDRAFVENRQRNAQELA 281

Query: 305 -----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                  P    + NAL AA L  A G+ ++ V + L        R   V        I 
Sbjct: 282 EVSDVNPPAPHNIANALAAAALARAYGVPASAVRDGLRAFTPDAHRIAHVADVDGVTYID 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A  +++ E  L    +      IV    G  +      ++G  A  L    ++    
Sbjct: 342 DSKATNTHAAEASLAAYDS------IVWIAGGLAKGATFDELVGGAAKRLRGAVLI---- 391

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
               D   IR  +    P       +R +      A++ A  +    D +++A
Sbjct: 392 --GRDRALIREALARHAPEVPVVDLDRTDTGAMLQAVQEAQRLARPGDTVLLA 442


>gi|16078584|ref|NP_389403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309394|ref|ZP_03591241.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313719|ref|ZP_03595524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318643|ref|ZP_03599937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221322916|ref|ZP_03604210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|417327|sp|Q03522|MURD_BACSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|580932|emb|CAA78769.1| murD [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633891|emb|CAB13393.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484071|dbj|BAI85146.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 451

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 120/356 (33%), Gaps = 49/356 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               + +TG++GK++  + + ++ +     +   G   T++S    +             
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVASEVAYHADG---------- 161

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      +  E SS  L        +       N+   H+DYH T++ Y  AK ++
Sbjct: 162 --------DEWIVTELSSFQL--MGTHAFRPEISLILNVFDAHLDYHHTRENYEKAKQKV 211

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +      +  AI+  DD     + +                +  ++K    +        
Sbjct: 212 YLHQTASD-KAIVNQDDETVVRLAEAGKAEIVPFSVSKTLEQGAYVKDSMIM-------F 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + E         LPG   + N L A  +    G  +  V + L     V  R ++V T +
Sbjct: 264 NGEAILPLEEVVLPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRLQYVTTVN 323

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RPIMGKIALDLA 410
                    A    +    L         + +++   G DR  G    +P M  +     
Sbjct: 324 GRKFYNDSKATNILATSKALSAFD-----KPVILLAGGLDRGNGFDDLKPYMKHV----- 373

Query: 411 DIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A++T     P+ E   K+  E+  GI       N  +A+  A  + N+ DV+++
Sbjct: 374 -KAVLTFGQTAPKLE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|260426600|ref|ZP_05780579.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
 gi|260421092|gb|EEX14343.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
          Length = 475

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 102/312 (32%), Gaps = 22/312 (7%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +    S         + VEA       +RL          TN+  +H+++  + +   + 
Sbjct: 158 IHAYGSNARVGLGEWMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGSIENLRD- 213

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    A+   D A  + ++ R  +          Q     +          
Sbjct: 214 GFYQFVSNIPFYGLAVCCTDHAEVQALVGRVTDRRVTTYGFNAQADVRAVNLRYEKGIAH 273

Query: 290 QVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +  + + K      P+PG+  V NAL A  +   +G+    +   L     V  RF 
Sbjct: 274 FDILLQAEDMKIEGCTLPMPGDHNVSNALAAVAVARHLGMKREEIRLALAAFGGVNRRFT 333

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG    G  I  DY H    +  +LK  R  T GR+I V      R      +      
Sbjct: 334 RVG-EVNGVTIIDDYGHHPVEIAAVLKAARQATEGRVIAV--HQPHRYSRLHSLFDDFCA 390

Query: 408 DL--ADIAIVTDDNPRSEDP--EKIRAEIIHGIPGFIEKGNRIEAI-------RTAIEML 456
               AD+  + +     E P     R +++ G+     +  R  AI       R   E  
Sbjct: 391 CFNEADVVAIAEVYAAGEAPIEGATRDDLVAGLIRHGHRHAR--AILNEDDLERLVREQA 448

Query: 457 NKQDVLVVAGKG 468
              D++V  G G
Sbjct: 449 RPGDMVVCLGAG 460


>gi|312959055|ref|ZP_07773574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
 gi|311286825|gb|EFQ65387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
          Length = 448

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 113/356 (31%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I+A++G++ KS+V + V ++   +G      G   T +             +
Sbjct: 103 FARHAKAPIVAISGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPALDLLS------DEV 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                +E SS  L+      +     +  N+  DH+D +    AY  
Sbjct: 157 EL--------------YVMELSSFQLET--THDLGAEVATVLNVSEDHMDRYSGLPAYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA S+ ++      G    + G          +   + +
Sbjct: 201 AKHRIFRGAKQF----VVNRQDALSRPLIGE----GMPCWTFGLGKPDFKAFGIREENGE 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L     +  R ++
Sbjct: 253 KYLAFEFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRAFGGLEHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+  +V   GGD        +     +
Sbjct: 313 VRDLDGVSYYNDSKATNVGAALAAIEGLGADIDGK--LVLIAGGDGKGADFKDLKAPVAE 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D + I A +   +P      +  +AI     +    D +++
Sbjct: 371 HCRAVVL-----MGRDADLIAAALGDAVPQV-RATSLDDAIAQCKALAQPGDAVLL 420


>gi|237734701|ref|ZP_04565182.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mollicutes
           bacterium D7]
 gi|229382029|gb|EEO32120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coprobacillus
           sp. D7]
          Length = 446

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/396 (13%), Positives = 120/396 (30%), Gaps = 42/396 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRK--FLSLFASRLYGKHPENILAVTGTSGKSSV 129
           +    +     +  I  + P ++    RK    +           ++ + VTGT+GK++ 
Sbjct: 63  LFERDFDFVIKNPGINYHKPFILRLKERKIPVYTEIELAFQVAKKQHYIGVTGTNGKTTT 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + + +I +         G   T       +                       +V +E 
Sbjct: 123 VTLIDKILKGQYQHVHLAGNVGTPLCDVVLDNDLLNE--------------ENHYVVIEM 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+  L    ++  K    +  NL  DH+DY  +   Y  A      +    +   ++  D
Sbjct: 169 SNFQLLD--IERFKPYVSTIINLTPDHLDYMASLDEY-YASKTNIYKNTDLDDYFVVNLD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D    E +++      +V           +K+    +  + +    + K         G 
Sbjct: 226 DKTVMEYLEKYPVPCNQVTMSLIHEADCMIKEQAIYYRDELIINLADIKVV-------GR 278

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N + A  +     +   ++   +     V  R EFV   +         A  +++ 
Sbjct: 279 HNIQNIMTAICIAKKCDVPVTVINREIASFIGVEHRIEFVREINGVKIYNDSKATNTDAT 338

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            + LK            V    G  D+G     M      ++ +        R ++    
Sbjct: 339 IIALKAFEQP-------VILLMGGFDKGLDLTEMATYGNKISHLVTFGAAGERFKN---- 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++   +       N   A   AIE     D++++
Sbjct: 388 --DM--HVANSSSVENLEAATLLAIEKAKAGDIILL 419


>gi|256821915|ref|YP_003145878.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
 gi|256795454|gb|ACV26110.1| UDP-N-acetylmuramate/alanine ligase [Kangiella koreensis DSM 16069]
          Length = 489

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 131/413 (31%), Gaps = 43/413 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S+A    +          + VV    + L+      +G      +AV GT GK++ 
Sbjct: 83  VVVASTAIPKNNPELEAAREHRVPVVPRA-EMLAELMRFRHG------VAVAGTHGKTTT 135

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S +  I    G   +F IG    ++S   + RL T                    ++  
Sbjct: 136 TSLIASIFAEGGLDPTFVIG--GLLNSAGSNARLGT----------------SRFFIAEA 177

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S     H    I+ +    TN+  DH+D +             F   LP    A++  
Sbjct: 178 DESDASFLH----IQPMVAVVTNIEADHMDTYGGDFKNLENNFIDFLHNLPFYGLAVMCI 233

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   +E+M R                           +  +V       + +    LPG
Sbjct: 234 DDKTVQEIMPRVTRPTVTYGFSEDADVRAVDFTQSGTKSHFKVIRRDYDGELEITLNLPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHT 365
              V NAL A  +    G+    + + L +   +  RF+  G          +  DY H 
Sbjct: 294 RHNVQNALAAIAVATEDGVSDQAIQKALSEFGGIGRRFQMYGDFKVDGKTITLMDDYGHH 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE 423
            + +   ++ +R     R +V+        + +       K+  +  D  ++ +     E
Sbjct: 354 PSEVMATIEAMRRSWPERRLVMVYQPHRYSRTRDLYEDFSKVLSE-VDALLLLEVYAAGE 412

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +P        +   I   G    I      +       +L   DV+V  G G+
Sbjct: 413 EPIPGADSRSLCRSIRQRGKIEPIHVEKIAQLPELLSNILQDGDVVVTQGAGN 465


>gi|319757602|gb|ADV69544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis JS14]
          Length = 447

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 133/427 (31%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         +  G   I  S    L D    +    P +  DN    K +    
Sbjct: 36  NDGKPFEENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGI 95

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++       +   G         
Sbjct: 96  PVWTEVELAYLVSDVP---IVGITGSNGKTTTTTMIAEVLNAGKKPAKLCGNIGY----- 147

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                  P+      A +  +      + +E SS  L     +         TNL   HI
Sbjct: 148 -------PASSVAQTATAEDT------LVMELSSFQL--MGTESFHPHIAVVTNLIASHI 192

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  +  ++  ++   I +          + A      V+    Q    
Sbjct: 193 DYHGTFEDYVAAKWMIQRQMTAEDFVVINFNQKEA----KELAGQTKATVVPFSTQEVVD 248

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                      +   I    +        PG   V NAL    +   +G+D   + E L 
Sbjct: 249 GAYLADGKLYFKGEYIMDADQIGV-----PGSHNVENALATIVVAKLLGVDQQAIQESLS 303

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FVG  +         +     +    K +    + ++I++   G DR   
Sbjct: 304 AFGGVKHRLQFVGEINGVSFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 359

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  +   L  + I+    PR +                IE  +  +A R A  +  
Sbjct: 360 FDELVPDLVG-LKKMVILGQSAPRVQRAADKAE------VETIEALDIADATRKAFAIAE 412

Query: 458 KQDVLVV 464
           K D++++
Sbjct: 413 KGDIVLL 419


>gi|146320316|ref|YP_001200027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 98HAH33]
 gi|253751317|ref|YP_003024458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|253753218|ref|YP_003026358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|253755041|ref|YP_003028181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|158514149|sp|A4VZT8|MURD_STRS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145691122|gb|ABP91627.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           98HAH33]
 gi|251815606|emb|CAZ51192.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|251817505|emb|CAZ55249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|251819463|emb|CAR44977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|292557890|gb|ADE30891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           GZ1]
          Length = 449

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 133/427 (31%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         +  G   I  S    L D    +    P +  DN    K +    
Sbjct: 38  NDGKPFEENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++       +   G         
Sbjct: 98  PVWTEVELAYLVSDVP---IVGITGSNGKTTTTTMIAEVLNAGKKPAKLCGNIGY----- 149

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                  P+      A +  +      + +E SS  L     +         TNL   HI
Sbjct: 150 -------PASSVAQTATAEDT------LVMELSSFQL--MGTESFHPHIAVVTNLIASHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  +  ++  ++   I +          + A      V+    Q    
Sbjct: 195 DYHGTFEDYVAAKWMIQRQMTAEDFVVINFNQKEA----KELAGQTKATVVPFSTQEVVD 250

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                      +   I    +        PG   V NAL    +   +G+D   + E L 
Sbjct: 251 GAYLADGKLYFKGEYIMDADQIGV-----PGSHNVENALATIVVAKLLGVDQQAIQESLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FVG  +         +     +    K +    + ++I++   G DR   
Sbjct: 306 AFGGVKHRLQFVGEINGVSFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  +   L  + I+    PR +                IE  +  +A R A  +  
Sbjct: 362 FDELVPDLVG-LKKMVILGQSAPRVQRAADKAE------VETIEALDIADATRKAFAIAE 414

Query: 458 KQDVLVV 464
           K D++++
Sbjct: 415 KGDIVLL 421


>gi|146318130|ref|YP_001197842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 05ZYH33]
 gi|158514131|sp|A4VTK3|MURD_STRSY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145688936|gb|ABP89442.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           05ZYH33]
          Length = 449

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 133/427 (31%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         +  G   I  S    L D    +    P +  DN    K +    
Sbjct: 38  NDGKPFEENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++       +   G         
Sbjct: 98  PVWTEVELAYLVSDVP---IVGITGSNGKTTTTTMIAEVLNAGKKPAKLCGNIGY----- 149

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                  P+      A +  +      + +E SS  L     +         TNL   HI
Sbjct: 150 -------PASSVAQTATAEDT------LVMELSSFQL--MGTESFHPHIAVVTNLIASHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  +  ++  ++   I +          + A      V+    Q    
Sbjct: 195 DYHGTFEDYVAAKWMIQRQMTAEDFVVINFNQKEA----KELAGQTKATVVPFSTQEVVD 250

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                      +   I    +        PG   V NAL    +   +G+D   + E L 
Sbjct: 251 GAYLADGKLYFKGEYIMDADQIGV-----PGSHNVENALATIVVAKLLGVDQQAIQESLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FVG  +         +     +    K +    + ++I++   G DR   
Sbjct: 306 AFGGVKHRLQFVGEINGVSFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  +   L  + I+    PR +                IE  +  +A R A  +  
Sbjct: 362 FDELVPDLVG-LKKMVILGQSAPRVQRAADKAE------VETIEALDIADATRKAFAIAE 414

Query: 458 KQDVLVV 464
           K D++++
Sbjct: 415 KGDIVLL 421


>gi|327473405|gb|EGF18825.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK408]
          Length = 459

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 128/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDMLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQVAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+       +   +++      
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVIL------GQSAARVKRAADQA 401

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A   A       D++++
Sbjct: 402 GVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|323343872|ref|ZP_08084099.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
 gi|323095691|gb|EFZ38265.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
          Length = 443

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 117/351 (33%), Gaps = 37/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G      G                   + L    
Sbjct: 102 AKMICITGSNGKTTTTSLIYHIFKTAGYDVGLAGNIGR--------------SLALQV-- 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              + +   +  +E SS  LD   +           N+  DH+D ++    ++       
Sbjct: 146 ---AEEPHEYYIIELSSFQLD--NMYKFHANIAILLNITPDHLDRYEYCMQHYVDAKMRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   K+   I + DD   K  +++      +      + K          +  ++ T  
Sbjct: 201 IQNQTKQDSFIYWNDDPIIKHELEKYDIHAVKCPFSELKEKGSIGYIEEGQYKIEKPT-- 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  +YN+L A       GI   ++ + L     V  R E V     
Sbjct: 259 -PFNMEQEELSLTGKHNIYNSLAAGIASNISGIKKDIIRKSLSDFPGVEHRLEKVCKVGG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++    L++++T       ++   G D+      I   +      +  
Sbjct: 318 VQYINDSKATNVDACWYALESMKT-----PTILILGGKDKGNDYSSIKELVRKKCVGLVY 372

Query: 415 VTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DN +  ++ + +      GIP   +  +  + ++   +M    D +++
Sbjct: 373 LGADNTKLHQNFDSL------GIP-VRDTHSMEDCVKACYDMAKPGDTVLL 416


>gi|307244053|ref|ZP_07526172.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492577|gb|EFM64611.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 453

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 131/405 (32%), Gaps = 37/405 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V ++A S  +       N  IL++ N   FL             N +AV GT GK+S  
Sbjct: 64  VVYTAAISDDNEELVEAKNKNILLI-NRAAFLGQIMREY-----RNSIAVAGTHGKTSTT 117

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I   +      +     +S+   + R+             +  ++   +V    S
Sbjct: 118 SILSTIFDYAQTDPTVL-VGGNLSTIGGNVRIG---------NSKHFITEACEYVDSFLS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            + L            G   N+  DH+DY         A    F +LLP+    II  D+
Sbjct: 168 FNPL-----------IGIVLNIEEDHLDYFSGLDEIK-ASFNKFGKLLPQSGYFIINGDN 215

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +K+++        R          I   +                    F   + G  
Sbjct: 216 ENTKDIVYDVRANIIRFGQNPDNDAIISDIRYDENGYAIFNLKYKGVNLGGFHLSVYGLH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YNA  A    I   ID   + + + + H V  RFE  G       +  DYAH    ++
Sbjct: 276 NIYNATAAILAAIVSDIDVDTIRKSVLEYHGVGRRFEKKGY-YNDALVIDDYAHHPTEIK 334

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKI 428
             L   + +   ++ V F      R +       + A   AD  IVTD     E DP  I
Sbjct: 335 ATLAAAKNLRDKKLWVAFQPHTYSRTKSLFKEFSE-AFYSADKVIVTDIYAAREKDPGDI 393

Query: 429 -----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   +       I      E +    + L   DV +  G G
Sbjct: 394 SSKDLVQSLYQNNVDAIYLPTFDEIVDYIKDKLGPNDVFMTCGAG 438


>gi|125717507|ref|YP_001034640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           sanguinis SK36]
 gi|158513223|sp|A3CLN5|MURD_STRSV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125497424|gb|ABN44090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Streptococcus sanguinis SK36]
          Length = 450

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 128/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 83  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDMLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 174 -MGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 232 MASQTQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQVAEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 284 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+       +   +++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVIL------GQSAARVKRAADQA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A   A       D++++
Sbjct: 393 GVSYLDATDVRDAAHKAFAQAEPGDIVLL 421


>gi|254393145|ref|ZP_05008303.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444045|ref|ZP_08218779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706790|gb|EDY52602.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 470

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 134/411 (32%), Gaps = 41/411 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +      +   + VV  +   L+   + L        +AV GT GK+
Sbjct: 70  ASCVVVSSAIRADNPELVRAAELSVPVVHRS-DALASLMTGL------RAIAVAGTHGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +       GL          ++    +               S  S Q       
Sbjct: 123 TTTSMLAVALGALGLD-PSYAIGGDLAGPGSNAHHGDGDIFVAEADESDRSFQKYA---- 177

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH   + +          +F   +      +I 
Sbjct: 178 ----------------PEVAIVLNVELDHHANYASMDEI-YESFEIFAGRIVPGGTLVIA 220

Query: 248 ADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           AD   + E+  R         V     +G  + +++V       +V + ++G+   F   
Sbjct: 221 ADQPGAVELTSRLRERTELRIVTYGESEGADVRVQRVTPNGLTSEVAVVLDGRPLTFTVS 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG    +NA+ A     A+GI    +   L     V  R +  G  + G ++   YAH 
Sbjct: 281 VPGRHYAHNAVAALAAGAALGIPVDELATALGAYTGVGRRLQLKG-EAGGVQVIDSYAHH 339

Query: 366 SNSLEMILKNIRTIT-SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +   L+ +R      R++VVF      R Q     MG+ AL LAD ++V D  P  E
Sbjct: 340 PTEMTADLEAMRAAAADSRLLVVFQPHLFSRTQELGTEMGQ-ALALADASLVLDIYPARE 398

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DP      E I                  E   T   M    D+++  G G
Sbjct: 399 DPVPGVTSELIITAARAAGADVTPAHAMREVPETVAGMAKPGDLVLTMGAG 449


>gi|324990672|gb|EGC22608.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK353]
          Length = 459

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 128/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASNKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEAFYPQIAVITNLMPTHLDYHGSVEEYAVAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQVAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+       +   +++      
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVIL------GQSAARVKRAADQA 401

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A   A       D++++
Sbjct: 402 GVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-064]
          Length = 392

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 110/300 (36%), Gaps = 18/300 (6%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           Q        + P+++V++T   L   A++   +    ++A+TG++GK++    +  I + 
Sbjct: 5   QKDVPNPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVET 64

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +    +  G  +          LT P    +A     ++ +    V  + +   +     
Sbjct: 65  TYKVHYTGGNFNNH-IGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIA---- 119

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+G  HI+Y  +++    AK+ +   L P            + + ++  
Sbjct: 120 --------IITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIY-----PHEETLLLG 166

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             N   R L+ G                +    I+    + +   P+ GE  V+N + A 
Sbjct: 167 NINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFVPIIGEHNVFNTMAAM 226

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                IGI+   +   L+ +     R E++ T S    +   Y  +  +L+ +LK    +
Sbjct: 227 LAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHM 286


>gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
 gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
          Length = 444

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 114/350 (32%), Gaps = 45/350 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++GKS+V   V ++   SG  +   G                   + L       
Sbjct: 110 IAITGSNGKSTVTDLVGELINASGKKALVGGNIGVP-------------ALDL------- 149

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 +V++E SS  L+  R   ++ +A +  N+  DH+D ++  Q Y +AK  ++ + 
Sbjct: 150 LKLEGDYVALELSSFQLESTR--SLEPVAATVLNVSEDHLDRYKNYQEYIDAKRSIYAKA 207

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A    DD  +      +     R        K                TI  +G
Sbjct: 208 RTCLVNA----DDENTWIKSAESGQNILRFGLSNNSDKIDWAVDFE------TCTIMHDG 257

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA---LVLEHLEKLHVVPGRFEFVGTNSR 354
            +   L  L  +       VA  L +    +      VL+  +    +P R + V     
Sbjct: 258 NEILKLDELTLQGIHNALNVAVALALVDIAEIELTQAVLDAAKSYQGLPHRSQLVAIKDG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A    +    + +        II++   GGD        + +I  +     +
Sbjct: 318 ITFINDSKATNVGATVAAIHSFEPQFGKNIILI--AGGDAKGADLSSLQEIIKETVKAVV 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +D   I               N  EA+R A E   K D++++
Sbjct: 376 C-----FGKDAPAIAKLAPA---KTQLVSNLEEAVRIAYEQAQKGDLVLL 417


>gi|325294673|ref|YP_004281187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065121|gb|ADY73128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 412

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 132/361 (36%), Gaps = 53/361 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R        I+++TGT+GKS+  + + Q+ + +G  +F  G       F+     T
Sbjct: 72  ELAYRY---FKGKIISITGTNGKSTTTALIYQVLKEAGYKTFIGGNFGIP--FSSFAEET 126

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T   I +                +E SS  ++   L   +       N+  DH++ +++ 
Sbjct: 127 TDDSITV----------------LELSSFQIED--LKDFRSSISIILNITPDHMNRYKSF 168

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK++L    L      I+  DD   + + +       R                 
Sbjct: 169 EEYVKAKLKL----LGHSEFCILNQDDPVLRNLNRENFFFFSRKRKADAF---------- 214

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               ++      + K    L PL G   V N + A      + + +  +L   +  + +P
Sbjct: 215 ---FEKGKIFCKDFKIEVELLPLKGIHNVENYMGALLALKKLKLSNEKILNGFKTFYGLP 271

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +    I    +   +SL+  L++         I++   G D+       + 
Sbjct: 272 HRTELVAEINGIKFINDSKSTNVDSLKKALESYED------IILIAGGSDKGLDF-SSLR 324

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           K+  +     +   +   +E  +K  ++I+          N  +A++TA ++ +  DV++
Sbjct: 325 KLVRERVKGIVAIGET--AEQFKKTFSDIV----DVRISDNIFQAVKTAYKLASSGDVVL 378

Query: 464 V 464
           +
Sbjct: 379 L 379


>gi|229092960|ref|ZP_04224092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
 gi|228690414|gb|EEL44199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
          Length = 450

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKAEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|226940889|ref|YP_002795963.1| cyanophycin synthetase [Laribacter hongkongensis HLHK9]
 gi|226715816|gb|ACO74954.1| ATP-grasp enzyme-like D-alanine-D-alanine ligase [Laribacter
           hongkongensis HLHK9]
          Length = 856

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 125/373 (33%), Gaps = 31/373 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV+GT+GK++       +  ++G     +G T T   +    ++ +        A + L
Sbjct: 474 VAVSGTNGKTTTVRLSAHLIAQTGKR---MGMTVTDGVYVNGRQIDSGDCSGPRSARNVL 530

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN------------LGRDHIDYHQTQQA 225
               V     E +  G+ +  L   +      TN               D +   ++   
Sbjct: 531 MHPDVDAAVFETARGGMLREGLGFDRCDVAVVTNVGEGDHLGLNYIYTLDELAVLKSIVV 590

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-VCA 284
              +   +          A + A    S        +            + I+++     
Sbjct: 591 QNVSPSGMAVLNAADPMVARMAASCPGSVTFFAHDGHHPVINAHRAQGRRVIYVEDGQIV 650

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-- 342
                 V ++ +             FQ+ N++ A G   A+GI    +   L        
Sbjct: 651 CAEGGDVRMTFDLAQVPLTAGGRIAFQIENSMGAVGAAWALGIAQEQIAAGLASFVSDAA 710

Query: 343 --PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKR 399
             PGRF     + RG  +  DY H  ++++ +++ + T+   R IVV    GD RD+  R
Sbjct: 711 TAPGRFNL--FDYRGATLIADYGHNPDAMQALVQAVETLPGQRRIVVISGAGDRRDEDIR 768

Query: 400 PIMGKIALDLADIAIVTDDNP-RSE---DPEKIRAEIIHGIPG---FIEKGNRIEAIRTA 452
               +I     D  ++  D   R     +   +  E + G P      E      AI TA
Sbjct: 769 RQ-TRILGTAFDEVVLYQDACQRGRADGEVVALLREGLEGAPRTRQIDEIQGEFLAIDTA 827

Query: 453 IEMLNKQDVLVVA 465
           +  L   D+ ++ 
Sbjct: 828 LARLTPGDLCLIL 840


>gi|165872273|ref|ZP_02216910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227813178|ref|YP_002813187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. CDC 684]
 gi|254754377|ref|ZP_05206412.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Vollum]
 gi|254766036|sp|C3L713|MURD_BACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|164711949|gb|EDR17489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227002721|gb|ACP12464.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 124/403 (30%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKAEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+    +   L++   V  R E+V T +        
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSKEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|30263914|ref|NP_846291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Ames]
 gi|47529344|ref|YP_020693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186762|ref|YP_030014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Sterne]
 gi|52141576|ref|YP_085253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus E33L]
 gi|167636572|ref|ZP_02394866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|167641133|ref|ZP_02399388.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|170688845|ref|ZP_02880048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|170709237|ref|ZP_02899658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|177655544|ref|ZP_02936954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190565997|ref|ZP_03018916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218905043|ref|YP_002452877.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228916550|ref|ZP_04080116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928961|ref|ZP_04091993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229604216|ref|YP_002868148.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
 gi|254721447|ref|ZP_05183236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. A1055]
 gi|254735953|ref|ZP_05193659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743848|ref|ZP_05201531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Kruger B]
 gi|254756744|ref|ZP_05208773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Australia 94]
 gi|60389927|sp|Q636B4|MURD_BACCZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390084|sp|Q81WC9|MURD_BACAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711879|sp|B7JK00|MURD_BACC0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766035|sp|C3P682|MURD_BACAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30258558|gb|AAP27777.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. Ames]
 gi|47504492|gb|AAT33168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180689|gb|AAT56065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. Sterne]
 gi|51975045|gb|AAU16595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           E33L]
 gi|167510913|gb|EDR86304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|167527995|gb|EDR90801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|170125844|gb|EDS94750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|170667200|gb|EDT17960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|172080073|gb|EDT65170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190562916|gb|EDV16882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218537488|gb|ACK89886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228830768|gb|EEM76373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843129|gb|EEM88211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268624|gb|ACQ50261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
          Length = 450

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKAEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|325856508|ref|ZP_08172197.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|327313073|ref|YP_004328510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
 gi|325483477|gb|EGC86450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|326944914|gb|AEA20799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
          Length = 443

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 113/362 (31%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I   +G  +   G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFTNAGYDAGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 140 ---SLALQV-----AEDPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYK 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + K         +   +     +     
Sbjct: 190 FENYADAKMRIIQNQTAEDSFIYWNDDPV---IKKELEKFDVHAVCYPFSELKENGSIGY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++              L G   +YN+L A       GI    + + L     V 
Sbjct: 247 IEEGQYKIEKPEPFNMEQEDLSLTGRHNIYNSLAAGIASDISGIKKENIRKSLGDFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +    I    A   ++    L+++RT       ++   G D+      I  
Sbjct: 307 HRLEKVCKVAGVQYINDSKATNVDACWYALESMRT-----PTILILGGKDKGNDYNAIKD 361

Query: 404 KIALDLADIAIVTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +      I  +  DN +  E+ + +      GIP   +  +  + +    EM    D +
Sbjct: 362 LVKEKCTGIVYLGADNRKLHENFDGL------GIP-VRDTHSMKDCVAACTEMAKPGDTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|323356550|ref|YP_004222946.1| UDP-N-acetylmuramate-alanine ligase [Microbacterium testaceum
           StLB037]
 gi|323272921|dbj|BAJ73066.1| UDP-N-acetylmuramate-alanine ligase [Microbacterium testaceum
           StLB037]
          Length = 468

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 9/192 (4%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            T++ +G+  +    +PG     NA  A  +   +G   A     +E       RFE  G
Sbjct: 264 FTLTADGESVEVQLRVPGAHNAVNAAGAVAVLRVLGHSLADAARAVEGFGGTVRRFELHG 323

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALD 408
               G  +Y DYAH    +   L   RT+     I+         R Q       ++   
Sbjct: 324 V-QHGVSVYDDYAHHPTEVAAALSAARTVVGEGRIIAIQQPHTYSRTQEMYREFAEVLET 382

Query: 409 LADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AD  ++ D     EDP      ++ +             +   A      +    D ++
Sbjct: 383 HADHTVMLDVYGAREDPVPGVTGELVSGAFADPEHVHYVPDWQAAADYTARIARPGDYVI 442

Query: 464 VAGKGHETVHIV 475
             G G+    I+
Sbjct: 443 TLGCGN-VYQII 453


>gi|315498794|ref|YP_004087598.1| UDP-N-acetylmuramate/alanine ligase [Asticcacaulis excentricus CB
           48]
 gi|315416806|gb|ADU13447.1| UDP-N-acetylmuramate/alanine ligase [Asticcacaulis excentricus CB
           48]
          Length = 475

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 82/280 (29%), Gaps = 16/280 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+  +H+D+    +A     +   E +      A+            K  +
Sbjct: 181 LKSTLAIVTNIDAEHLDHWGDFEAVKKGFVDFVENIPFYGFAAVCVDHPEVLALTAKVEN 240

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----EGKDFDFLFPLPGEFQVYNALV 317
                                        V  S              P+ G   V NA  
Sbjct: 241 RRLIPYGVSPQAEVRCTNIDFGPEGATFDVVFSPVGVEPFVWAGLKLPMTGNHNVSNATA 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  +   +G+    V + L     V  RF   G    G RI  DY H    +  +LK  R
Sbjct: 301 AIAIARELGVSEDDVRKGLGAFGGVKRRFTTTG-IVNGVRIIDDYGHHPVEIAAVLKAAR 359

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKIR 429
            +T G++I V      R    R +M + +     AD  IV D     E P      + + 
Sbjct: 360 QVTQGKVIAVV--QPHRYTRLRDLMTEFSTCFHDADKVIVADVYSAGEVPIEGVSKDALV 417

Query: 430 AEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
             +           +   A+           D++V  G G
Sbjct: 418 EALHRHGHRNAVGLDGPAALAGLVAAEAKAGDLVVCLGAG 457


>gi|289582210|ref|YP_003480676.1| dihydropteroate synthase [Natrialba magadii ATCC 43099]
 gi|289531763|gb|ADD06114.1| dihydropteroate synthase [Natrialba magadii ATCC 43099]
          Length = 840

 Score = 61.5 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 72/187 (38%), Gaps = 11/187 (5%)

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A H +  V+I  +        PLPG  Q  NA +AA L   I   S   L    +    
Sbjct: 242 RANHTEAAVSIDADDWSVSTQIPLPGTHQAENAGIAAALARQIADVSTDELARGLRNAHW 301

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGRFE + T      + +D AH   + E +   + T     + +VFG   D+D      M
Sbjct: 302 PGRFEVLDTEPL---VVLDGAHNPGACEQLAATLGTYEFDDLHLVFGAMHDKD---HREM 355

Query: 403 GKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRI--EAIRTAIEMLNKQ 459
              AL   D  I  +    R+ED   + A +         K  R   +A+  A+      
Sbjct: 356 V-AALPTPDAVITAEPGLDRAED-RDVLATVFDDAGTAQVKTTRSVPDALSQALADAGPD 413

Query: 460 DVLVVAG 466
           D ++V G
Sbjct: 414 DCVLVTG 420


>gi|332142426|ref|YP_004428164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552448|gb|AEA99166.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 479

 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 131/405 (32%), Gaps = 40/405 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V+S   +L      +     + V+ +   F  L  S       + ++ +TG++GK
Sbjct: 72  GVDTLVLSPGLALDIEQVELAKQCGVEVIGDVELFARLNTSFKSDTPAKRVVGITGSNGK 131

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V   V  +    G+ S + G                   +                V 
Sbjct: 132 TTVTLLVNHLLNACGVKSIEAGNVGRP----------VLEALE----------SDADVVV 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE------LLPK 240
           +E SS  L+      + L A +  N+  DH+D H T + Y +AK R+F            
Sbjct: 172 MELSSFQLET--TSSLVLEAATVLNISDDHLDRHGTLEHYVDAKHRIFANAKSAVVWRDG 229

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGC-RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           E  A   A +   +   ++A+  G  R       G       +  + + + +  + +   
Sbjct: 230 EFVAPDDALNVEGQANAQKANQNGLLRSAIEYGLGASDSGFSIVTMLDSKHIAFNGKPII 289

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L G   V N + A G+C  +G+     ++HL      P R   V   +    I 
Sbjct: 290 ALSDIHLAGMHNVLNIMAALGICCKLGVSPDQAVKHLHSFKSAPHRCVEVARVNSVRYID 349

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A    +    L+ I    +G+  ++   GGD        +                +
Sbjct: 350 DSKATNIGATIAALEGISPTIAGK--LLLIAGGDAKGADISSLAPYLTQYVSHVFALGKD 407

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                                +     EA++ A+ +    D +++
Sbjct: 408 ---------AHLFAQSFAHTTQVATMKEAVKGALRLAAPGDAVLL 443


>gi|295094465|emb|CBK83556.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus sp. ART55/1]
          Length = 460

 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 91/277 (32%), Gaps = 9/277 (3%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              K       N+  DH+D+ +           +F    PKE   I+  D  Y   V++ 
Sbjct: 175 HAFKPFISIILNVDADHLDFFKDIDEIA-ESFHVFATKTPKEGLVIVNGDMKYYDTVVRD 233

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                             H  +     +     +    +  D    + GE  VYN+L A 
Sbjct: 234 LECRVVTFGKGAQNKYSAHNIRFDDFGHPTYTLVVDGKEITDITLKVFGEHNVYNSLSAI 293

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              + +GI   ++ + L +      RFE+ GT     R+  DYAH    +   LK  +  
Sbjct: 294 AASLELGISIDVIKQGLSECVGAERRFEYKGTILDNVRVMDDYAHHPTEIAATLKAAKNT 353

Query: 380 TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEI 432
           +   +  VF      R           AL + D  IV D     E        +++  +I
Sbjct: 354 SYNELWCVFQPHTYSRTYALFDEFVD-ALKVCDHVIVADIYAAREKDTGLVSAKQLAEKI 412

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                      +  +     ++   K D+L+  G G+
Sbjct: 413 AETGTDAFYLPSFDDIENYLLKNCKKNDLLITMGAGN 449


>gi|218437868|ref|YP_002376197.1| cyanophycin synthetase [Cyanothece sp. PCC 7424]
 gi|218170596|gb|ACK69329.1| cyanophycin synthetase [Cyanothece sp. PCC 7424]
          Length = 879

 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
           +  PGR      N       VDYAH     E +   +R     R+ VV G G  RD+   
Sbjct: 726 NQTPGRMNL--FNLGSYHALVDYAHNPAGYEAVGGFVRNWRGERLGVVGGPGDRRDEDL- 782

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTA 452
            ++G+++  + D  IV  DD+ R  +  ++   I+ GI        +    N + AI   
Sbjct: 783 ILLGQLSAQIFDRIIVKEDDDTRGRERGEVADLIVKGITQENPHVKYEIILNEVTAIEEG 842

Query: 453 IEMLNKQDVLVV 464
           +  + +  ++V+
Sbjct: 843 LAQVAQNGLVVI 854


>gi|327404522|ref|YP_004345360.1| FolC bifunctional protein [Fluviicola taffensis DSM 16823]
 gi|327320030|gb|AEA44522.1| FolC bifunctional protein [Fluviicola taffensis DSM 16823]
          Length = 415

 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 116/366 (31%), Gaps = 13/366 (3%)

Query: 107 SRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           S  +    E    + V GT+GK SV++ +  I   SG +              +      
Sbjct: 36  SAFFNHPEEKLRFIHVGGTNGKGSVSNMLASILTESGETVGLFTSPHLFDFTERIRINGN 95

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P  I     + +         S+E S   +                 +    +       
Sbjct: 96  P--IDNQFVIDFCEKVQNHSWSIEPSFFEITWMMALDYFHQNNCSIVIAEVGLGGRLDAT 153

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                 + +   +       +       + E           V+      +   + +  A
Sbjct: 154 NIIQPIISVITNIGLDHINILGDTRTKIAFE-KAGIIKQNIPVVIGEVDSETFPVFEATA 212

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA---IGIDSALVLEHLEKLHV 341
                ++ I +          +  +   Y+ + A    +       +  +    +  L  
Sbjct: 213 NERNSRIIIPLHQDSSLPKGIIGYQIGNYSIVSAVCDYLEEQGFSCNQPIRENGILNLKA 272

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRP 400
             G F  +   +      VD AH +  + +++K+I+ +  GR+  ++G   D++ +    
Sbjct: 273 NTGFFGRMEIINHSPLTIVDCAHNAEGIHVLMKSIQEVNKGRLHCIYGTSSDKNLETIIH 332

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +   A         T +NPRS   E++  ++   I       + I+A++ A E +NK D
Sbjct: 333 ELPAEAAYY----FTTFENPRSLSFEELTQKMTPRIKKATFFDSPIKALKKAQETVNKSD 388

Query: 461 VLVVAG 466
            +++ G
Sbjct: 389 TILIFG 394


>gi|298245025|ref|ZP_06968831.1| FolC bifunctional protein [Ktedonobacter racemifer DSM 44963]
 gi|297552506|gb|EFH86371.1| FolC bifunctional protein [Ktedonobacter racemifer DSM 44963]
          Length = 472

 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 11/130 (8%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
             P R E VG       I VD AH ++S++ +++ +RT     R++ V     D+DQ   
Sbjct: 321 QWPARIEVVGRQPT---IVVDGAHNTDSMQKLVQALRTTFAPRRLLFVLSTSKDKDQEG- 376

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEML 456
             M +   D AD+ ++T+  NPR    E + A      PG     +    EA+  A+ + 
Sbjct: 377 --MIQTLAD-ADVVVLTNMHNPRVTPLETLSALFSRHAPGVELHSEPTSEEALDLAVRLA 433

Query: 457 NKQDVLVVAG 466
           +K D++   G
Sbjct: 434 DKDDLICATG 443


>gi|114566875|ref|YP_754029.1| cyanophycin synthetase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337810|gb|ABI68658.1| UDP-N-acetylmuramyl tripeptide synthase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 887

 Score = 61.5 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 123/365 (33%), Gaps = 25/365 (6%)

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TGT+GK++VA  ++ +   +G        + T              P+      S L ++
Sbjct: 486 TGTNGKTTVARLIRHVLSLAGQKVGMTCSSGTYIGKECIAEGDNTGPLSAH---SILYNR 542

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            V    +E +  G+ +  L       G  TN+  DH+           A ++       K
Sbjct: 543 DVEVAVLETARGGIIRRGLGYDLADVGVITNISGDHLGMDDINTLEDMAFVKSLVVEAIK 602

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------------KVCAIHNK 288
            +   +   D    E + R  +    + S+      +                +  I+  
Sbjct: 603 PNGYAVLNADDGMTEHIVRKASCNPVLFSLNRDNMLVEDHIKQDGMAVVIEEDLIVIYQN 662

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE- 347
           +     +   +    F       + N+L A     A G+   ++   L      P   E 
Sbjct: 663 KIRDEIMTINEIPITFNGKAICNIENSLAAVASLSAFGLAKNVIRLGLMSFTSDPTANEG 722

Query: 348 -FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
            F   +    R+ +DY H  ++ + +++ I  + + R++ + G  GDR       +G+I+
Sbjct: 723 RFNLFDMGSFRVLLDYGHNYSAYQSVMQFINNMNAARLVGIIGVPGDRLDKTIFDIGQIS 782

Query: 407 LDLADIAIVTDD-NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNK 458
                   + +D + R     ++   + +G               +  +A+  AI     
Sbjct: 783 GQAFSKIYIKEDEDLRGRSAGEVAGILYNGAVSGGADRENMEIVLSETDALNAAINNAFT 842

Query: 459 QDVLV 463
            D++V
Sbjct: 843 GDLIV 847


>gi|328945583|gb|EGG39734.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1087]
          Length = 459

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDTLVMELSSFQLI 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 184 --GIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVMPFSTTEKVDGAYLEGDV--------LTFRGEAIMQAAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+    PR       RA    G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAPR-----VKRAADQAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A       D++++
Sbjct: 403 VS-YLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|270291458|ref|ZP_06197680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
 gi|270280304|gb|EFA26140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
          Length = 464

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 141/399 (35%), Gaps = 46/399 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPENILAVTGTSGK 126
           I+      L   +  I    P+LV               A R+       ++ VTG++GK
Sbjct: 71  ILAQHHIELIVKNPGIPYTNPVLVAAKEQNVPIIAEPELAYRVMD---SELIGVTGSNGK 127

Query: 127 SSVASFVQ-QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++V + +Q  + Q+   +++  G                P+   + KA +          
Sbjct: 128 TTVTTMIQLMLDQQDHHAAYVAGNIGV------------PATTVVQKATANDRVVMELSS 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A    L  H             N+  +H+D+H+T++ Y N KMR+ E     +   I
Sbjct: 176 FMLAGIDQLHPH--------IAVVNNIFSNHLDWHKTRENYVNDKMRITENQTKDDYFVI 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            + D+   +++ +R           G      + K        +++  + E         
Sbjct: 228 NW-DNPEWQQLAQRTAAQVVPFSRQGLVENGAYAKDGQLYFKNERIMAADEIG------- 279

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  V NAL A  +    G+ +  + + L+    V  R ++V T +         A  
Sbjct: 280 VPGDQNVENALAAIAVAKIEGVANKHIKQVLQTFSGVKHRIQYVKTLAGRQFYNDSKAT- 338

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              +E     ++     R I++   G DR      ++  +        IV   N ++   
Sbjct: 339 --DIEATQVALKAFQ--RPIILIAGGLDRGDDYTRLVADL-KPHVKEVIV---NGQTAAH 390

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  A+   G+    +     +++  A E     DV+++
Sbjct: 391 MQEAAQ-AAGVKVVKDSPRVKDSVAIAFEDSQPGDVILL 428


>gi|53803416|ref|YP_114845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
 gi|62900496|sp|Q604V5|MURD_METCA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53757177|gb|AAU91468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
          Length = 459

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 144/444 (32%), Gaps = 73/444 (16%)

Query: 34  SSDSRHIQAG---------W--IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
             DSR    G            +F+           F   A+A  A  +VVS   SL   
Sbjct: 50  VMDSRLAPPGLQDLREAFPDVPLFLG---------DFSRSALAA-ATHLVVSPGLSLDLA 99

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                    + V  +    L LFA  +       ++A+TG +GKS+V + V  + + +G+
Sbjct: 100 EIRESHRCGVRVFGD----LDLFACCVR----APVVAITGANGKSTVTTLVGLMAKAAGV 151

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
           ++   G   T               + L  A + L         +E SS  L++  L   
Sbjct: 152 NAAVGGNLGTPM-------------LDLLDAAAEL-------YVLELSSFQLERSELF-- 189

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +    +  N+  DH+D +    +Y  AK R+F                     ++   + 
Sbjct: 190 EADVATVLNISPDHMDRYPDLASYAEAKRRVFRGEGLMVLN--------QDDPLVAAMYR 241

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G R +  G          +     +  +              + G   + NAL A  + 
Sbjct: 242 PGRRAVRFGLGSGDELDYSLARWEGRAWLLAKGVPLLPADEVRIKGRHNLANALAAVAIA 301

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A G D   ++  L     +  R ++V        +    A    +    L  +      
Sbjct: 302 DACGFDRQAMVGVLRTFPGLDHRMQWVADIGGVAYVNDSKATNVGACIAALSGLEG---- 357

Query: 383 RIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
              VV   GGD +      ++   A  L    ++  D P       +  E++ G+   I 
Sbjct: 358 --KVVLIAGGDGKGADFSSLVPVAAEKLRAAVLMGRDGP-------LIDEVLKGVVPTIR 408

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVA 465
                EA+R A  +    D +++A
Sbjct: 409 VKTMFEAVRAARGVAQSGDTVLLA 432


>gi|291546674|emb|CBL19782.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 459

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 94/279 (33%), Gaps = 22/279 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+D+ +      ++  R F ELLP +   II AD    + + +    
Sbjct: 178 FPKISVILNMDADHLDFFKDIDDIRHS-FRKFAELLPADGTLIINADTPEYETITRELPC 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                                   +     +    K   +   +PG   V NAL A  + 
Sbjct: 237 NVLTYGLEHDADYTAADITWDKYGHPSFSVLFRGKKIGSYYLRVPGIHNVSNALAAIAVG 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             + + + ++++ L        RF++ G    G  I  DYAH    +E  L   +     
Sbjct: 297 RLLDLPNDVIVKGLGSFTGTDRRFQYKG-EIGGITIIDDYAHHPTEIEATLHAAKNYPHQ 355

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---------DPEKIRAEI 432
           ++  VF      R +   P   K AL LAD  ++ D     E         D +K   E+
Sbjct: 356 KVWCVFQPHTYTRTKALLPEFAK-ALTLADHVVLADIYAARETDNLGISSQDLQKQIQEL 414

Query: 433 ---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  P F E  +        ++     D+L+  G G
Sbjct: 415 GTPCEYFPTFDEIES------FLLKSCAHGDLLITMGAG 447


>gi|271964376|ref|YP_003338572.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
 gi|270507551|gb|ACZ85829.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
          Length = 468

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 140/434 (32%), Gaps = 57/434 (13%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFAS 107
           G +   GH      I    + +VVS+A    +      +R    ++     R      AS
Sbjct: 60  GGRVHIGH--AASNIKN-VDTVVVSTAIRDSNPELGEALRQGLRVI----PRAA--ALAS 110

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G+     +A+ GT GK++  S +    Q+ G                    +TT   
Sbjct: 111 VMAGR---TGVALAGTHGKTTTTSMLTVALQKCGADPSYC---------VGGQLVTTG-- 156

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                              V  +           +       TN+  DH+D +   +A +
Sbjct: 157 ----------LGADEGAGEVFVAEADESDGSFLMLAPEIAVVTNVEPDHLDNYGDPRAVY 206

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           ++  R  E +          ADD  S  ++  A   G +V++ G                
Sbjct: 207 DSFARFVERVGKSMVI---CADDPGSAALVPIARARGLKVVTYGEAEGADFRVSGILPDG 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                      +     P  G     NA     + + +G+    + + L        RFE
Sbjct: 264 LGISFAVEGRGEVRLAVP--GRHNALNATAVIAVAMELGVSFDEIRDGLAAFTGAKRRFE 321

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFG-CGGDRDQGKRPI 401
             G  + G  ++  YAH    L   L+  R +      SGR+I VF      R +     
Sbjct: 322 AKG-EAGGVAVFDSYAHHPTELAADLRAARDVVASFSGSGRVIAVFQPHLYSRTRFFADE 380

Query: 402 MGKIALDLADIAIVTDDNPRSEDPE-KIRAEIIHGI-----PGFIEKGNRIEAIRTAIE- 454
            G +AL LAD AIV D     EDPE  +   ++ G              R EA+   +  
Sbjct: 381 FG-VALGLADEAIVLDVYGAREDPEPGVSGALVAGKVPLPPERVTYAPQR-EAVPALVAG 438

Query: 455 MLNKQDVLVVAGKG 468
                D+++  G G
Sbjct: 439 RARPGDIVLTMGAG 452


>gi|294815699|ref|ZP_06774342.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328298|gb|EFG09941.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 529

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 134/411 (32%), Gaps = 41/411 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +VVSSA    +      +   + VV  +   L+   + L        +AV GT GK+
Sbjct: 129 ASCVVVSSAIRADNPELVRAAELSVPVVHRS-DALASLMTGL------RAIAVAGTHGKT 181

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +       GL          ++    +               S  S Q       
Sbjct: 182 TTTSMLAVALGALGLD-PSYAIGGDLAGPGSNAHHGDGDIFVAEADESDRSFQKYA---- 236

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                  N+  DH   + +          +F   +      +I 
Sbjct: 237 ----------------PEVAIVLNVELDHHANYASMDEI-YESFEIFAGRIVPGGTLVIA 279

Query: 248 ADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           AD   + E+  R         V     +G  + +++V       +V + ++G+   F   
Sbjct: 280 ADQPGAVELTSRLRERTELRIVTYGESEGADVRVQRVTPNGLTSEVAVVLDGRPLTFTVS 339

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG    +NA+ A     A+GI    +   L     V  R +  G  + G ++   YAH 
Sbjct: 340 VPGRHYAHNAVAALAAGAALGIPVDELATALGAYTGVGRRLQLKG-EAGGVQVIDSYAHH 398

Query: 366 SNSLEMILKNIRTIT-SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +   L+ +R      R++VVF      R Q     MG+ AL LAD ++V D  P  E
Sbjct: 399 PTEMTADLEAMRAAAADSRLLVVFQPHLFSRTQELGTEMGQ-ALALADASLVLDIYPARE 457

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DP      E I                  E   T   M    D+++  G G
Sbjct: 458 DPVPGVTSELIITAARAAGADVTPAHAMREVPETVAGMAKPGDLVLTMGAG 508


>gi|114777861|ref|ZP_01452792.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551852|gb|EAU54392.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 458

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 137/414 (33%), Gaps = 49/414 (11%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           A+ +V+SSA   +  + +A  +   P++     R   L+       G      +AV G+ 
Sbjct: 67  AQVVVLSSAINPANPEIAAAEKRGIPVI----PRAEMLAELMRMKQG------VAVAGSH 116

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK+++ S +    + +G+            ++    RLT           +  S+  +  
Sbjct: 117 GKTTMTSLIAHGMEAAGMD----------PTYIIGGRLT-----------ATGSNARLGA 155

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                +           +       +N+  +H+D++        A  R F  L+P     
Sbjct: 156 SPWLVAEADESDGSFLRLSPTIAVVSNIDPEHLDHYGDFATLQEA-FRTFVNLVPFYGRV 214

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +++ +  +   +    H       S       +   +  +            G   +F  
Sbjct: 215 VLHHEHPHVAALRLGLHKPVTTYGSSLQADLHLLESRAGSEGQCFTAASREHGNLGEFHL 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P+PG     NAL A  + + +GID   +   L     +  RF+     +    +  DYAH
Sbjct: 275 PMPGRHNAENALAAMAVLMDLGIDIETIRSALASFEGIQRRFQRTSCGTG--VMVDDYAH 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDNPR 421
               +   L   R     R I V        + +  +   MG  A D A+   +      
Sbjct: 333 HPREVLATLVAARDCWPERHISVIFQPHRFTRTRDLMDDFMG--AFDTANEVSLLPIYAA 390

Query: 422 SE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           SE      + + +   ++  G        N  EA     E L    ++++ G G
Sbjct: 391 SEAAIEGVNSQALCQGMLARGHRHVSLLENLDEAAAAVREQLAAGHIVLLMGAG 444


>gi|227548915|ref|ZP_03978964.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079004|gb|EEI16967.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 483

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 143/427 (33%), Gaps = 59/427 (13%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   +D    +R+   + P++   +    L               L + GT GK
Sbjct: 72  VVVTSFAAIPKDNPELVRAAEESIPVIRRSDLLAELME---------GSTQLLLAGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G                 D        + LA   ++  +  V    
Sbjct: 123 TSTTSMAVVALQAAGE----------------DPSFVIGGQLNLAGTNAHQGAGEVFVAE 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S   L ++     K      TN+  DH+DY  T + Y       F + +P     ++
Sbjct: 167 ADESDASLLRY-----KPDVAVITNIEPDHLDYFGTAEKY-FEVFDSFADRIPPGGHLVV 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---------CAIHNKQQVTISVEG 297
             DDA +    +RA   G  V   G          +              + ++TI    
Sbjct: 221 CLDDAEAAACGQRARARGVNVFGYGTAAAASRYPDIPAAAVITASDTTFAEVELTIGGVQ 280

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NS 353
           +   +   +PG+  V NA  A   C  +G D   + E L     V  RFE  G       
Sbjct: 281 RTVRYTLSIPGQHMVLNAAGALVACTLVGADPGKLAEGLTGFTGVRRRFELKGQLTGGRF 340

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGK---IALD 408
            G R+Y DYAH    +  +L   R      G+   V  C       +     +    AL 
Sbjct: 341 AGVRVYDDYAHHPTEVTAVLTAARETVRAAGQGGKVVACYQPHLYSRTIAFAEQFAAALS 400

Query: 409 LADIAIVTDDNPRSEDPEK------IRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           LAD  ++ D     E+P +      I  ++        + + N  +A  T  E+    D+
Sbjct: 401 LADSVVLLDIFGAREEPVEGVDSRIIIDQMDPEASARTVYEPNFSQAPVTIAELAEPGDL 460

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 461 VLTMGAG 467


>gi|217967635|ref|YP_002353141.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336734|gb|ACK42527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 456

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 101/282 (35%), Gaps = 18/282 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SS  L+   ++  +     F N+  DH+D + +   Y  AK R+F     ++  
Sbjct: 160 YFVLEVSSFQLED--IEKFRPFISLFINIYPDHLDRYSSMDEYMLAKSRIFMNQKEEDYA 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y  +     ++  A     + L  G++             NK    +S         
Sbjct: 218 ILSYDQEE----IINLAKPYKVKKLFFGFKKHENDGIFYDESRNKVFYKLSERYGSLTIP 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +     + N + +A + + +G++  ++ +  E    +P   + +G  +    +    A
Sbjct: 274 KGIWNRILISNFMASALVGLLLGVEERVIEKTGEDFQGIPFALQRIGELNGRVFVNDSKA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               S    + +I +      I++   G +++     +   I        ++        
Sbjct: 334 TNPVSTSSAINSINS-----PIILILGGRNKNFDFHELFENIKKSKVRRVVLIG------ 382

Query: 424 DPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
           + ++I  E+           +   +A+R A E+    DV+++
Sbjct: 383 ETKEIMRELSEEYEIPYVIADSLEDAVRRAYEVSEPGDVILL 424


>gi|170076738|ref|YP_001733376.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. PCC 7002]
 gi|169884407|gb|ACA98120.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7002]
          Length = 488

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 130/425 (30%), Gaps = 58/425 (13%)

Query: 62  QAIA--QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            AI    G   ++ S+A   ++    A       I    +    L   A         + 
Sbjct: 73  DAIEQHNGLPQVICSTAIGQENPEFQAAQSLGCHIFHRSDVLSAL--VAEY-------DS 123

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT GK++ +S +  I   +G+                      P+ I   +  ++ 
Sbjct: 124 VAVGGTHGKTTTSSLIGYIFLVAGVD---------------------PTIIVGGEVDAWD 162

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +  +   +   +        L  ++   G  TN+  DH D++Q+            ++ 
Sbjct: 163 GNARLGQGNYLVAEADESDGTLVKLRPQLGVVTNIELDHPDHYQSLDQVVEIFQTFAQQC 222

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
               +             +                +        +       Q TI   G
Sbjct: 223 DRLIACV-------DCPTIATGVVPYQVGYGLQNLEQADYWATDIHYGATSTQATIWERG 275

Query: 298 KDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
               +    L G   + NAL A       G+    + E L        RFE  G   +G 
Sbjct: 276 DRLGEINLALLGAHNLSNALGAIAAARCCGVPFEPIAEALASFQGAKRRFEIRGQ-YQGI 334

Query: 357 RIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIA 413
            +  DYAH  + +E+ L+  R       R++ +F      R Q       K A   AD+ 
Sbjct: 335 TLIDDYAHHPSEIEVTLQAARLRAGQGRRVVAIFQPHRYSRTQAFFDEFAK-AFKNADVT 393

Query: 414 IVTD---------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I+TD         DN   E  ++  A    G        +           L   D++++
Sbjct: 394 IITDIYSAGEKNVDNLTGEALQQAIAHQQDG--DVAYYPDLQSLPTWLAPQLQTGDLVLL 451

Query: 465 AGKGH 469
            G G+
Sbjct: 452 LGAGN 456


>gi|148381457|ref|YP_001255998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933316|ref|YP_001385832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936485|ref|YP_001389239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. Hall]
 gi|166224758|sp|A7FZA3|MURD_CLOB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224759|sp|A5I7P2|MURD_CLOBH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148290941|emb|CAL85077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929360|gb|ABS34860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932399|gb|ABS37898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A str. Hall]
          Length = 458

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 116/364 (31%), Gaps = 55/364 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD             G    ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNNLLVLNKDDD----------LTNGMENEALGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+      +          L+AA   +   +    +         V  R E
Sbjct: 260 SNNKLTIQGKEVCDSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       + +++   G D+     P+    A 
Sbjct: 320 FIREVNGIKYYNDSIASSPSRTLAGLNSFE-----KPVILIAGGYDKKIPFEPL----AE 370

Query: 408 DLADIA---IVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNK 458
              D     I+  D        KI++     I         +   +  EA++ A  M  K
Sbjct: 371 GGYDKIKILILMGDTKN-----KIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEK 425

Query: 459 QDVL 462
            D++
Sbjct: 426 GDII 429


>gi|330718670|ref|ZP_08313270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           fallax KCTC 3537]
          Length = 414

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 131/430 (30%), Gaps = 69/430 (16%)

Query: 41  QAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRK 100
           + G +F+       D    +  +       IV +   + Q           I ++     
Sbjct: 18  KNGVVFI-----NHDAADIVDDSFQ----YIVKNPGINYQHPIIKQAEKLNIPIITEVTV 68

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            LS             ++ VTG++GK++  S ++ + Q  G S    G   T        
Sbjct: 69  ALST--------FKGRLIGVTGSNGKTTTVSLIRDMLQADGQSVVTAGNIGTPVCEVAGQ 120

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                                   + +E SS  L       I+    + TN+   H++YH
Sbjct: 121 LR------------------KDDTLLLELSSFQLL--GTPDIQPDIAAVTNIFASHLNYH 160

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +++ Y  AK ++ +  L  +   +    D    +   +   A   + S    G +    
Sbjct: 161 GSRENYVKAKFQITKHQLATQHLVL--NADIADSQRFAQDTQAAVTMFSRQQSGYYAGAD 218

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +           +  +         L G   + N L A  +    G+    + + L +  
Sbjct: 219 QDNL-------LVDNQIVMPLDNIKLVGPHNLENILAAVSVAKLAGVKIESMRQVLSQFG 271

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R EFV +++         A     +E   + + +     + +  G     D  +  
Sbjct: 272 GVKYRLEFVFSHNGIKFYDDSKAT---DIEATQQALNSFDVPTVWLAGGLDRGDDLTRMK 328

Query: 401 IMGK-----IA-LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              K     IA  + AD  +            KI      GI       N + A   AI 
Sbjct: 329 DNLKHVKSVIAFGETADKVV---------SLAKI-----AGIQNITVTENVMTAAPIAIA 374

Query: 455 MLNKQDVLVV 464
                DV+++
Sbjct: 375 QAKAGDVVLL 384


>gi|314978259|gb|EFT22353.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA2]
 gi|315088657|gb|EFT60633.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA1]
          Length = 471

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 97/272 (35%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESIGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L   L   R +    GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRVVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   +I   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|188997415|ref|YP_001931666.1| FolC bifunctional protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932482|gb|ACD67112.1| FolC bifunctional protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 413

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 113/399 (28%), Gaps = 55/399 (13%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-------- 149
            R  L         +     + V GT+GK S +++++ + +  G  +             
Sbjct: 22  IRSALKEL---NNPEKNFKSILVAGTNGKGSTSAYLESLLRHYGYKTGLFTSPHLIRENE 78

Query: 150 -----------------TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                             + +    +   LT      L              V +     
Sbjct: 79  RWQIDRKEIDDKKLQNYINELKPIIEKYNLTYFEACTLL----AFKYFSDKKVDIAVVEV 134

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL   R D   ++    + +     D+                 +  ++ PA+I  +   
Sbjct: 135 GLG-GRWDSTNVLEPETSVITNVSFDHMHMLGNTLLDIAYEKTGITRQDKPAVIGRNQPE 193

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               +K       +   +     F+        + K +  I    +             +
Sbjct: 194 IIHWLKER---KIKEYYIKDIDYFVKEIDFNKYNYKFKEHIFENLEISMLGKRQIENSSL 250

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
                   L          ++          GR E     S+   I +D AH    L   
Sbjct: 251 ALTTFLLFLDKNNQPVVENIIRKALYNTKWKGRMEI---ISKNPFIIIDGAHNEEGLIKT 307

Query: 373 LKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPR---SEDPEK 427
            + I+ I   + I  +F    D+D  K   M  I    +D  I T     R   +ED + 
Sbjct: 308 FQEIKEIFPNKKIFTIFSFMKDKDTEK---MINIIKQNSDFYIATVMPFSRAMTAEDFKN 364

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +      GI    E  N +EA++     ++K  ++++ G
Sbjct: 365 L------GIENVKE--NHLEAVKELKNSVDKDTIILITG 395


>gi|303235741|ref|ZP_07322348.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella disiens
           FB035-09AN]
 gi|302484188|gb|EFL47176.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella disiens
           FB035-09AN]
          Length = 459

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 118/363 (32%), Gaps = 39/363 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L   GT GK+S ++    I  +S L         + +         +   + +    
Sbjct: 112 HKGLCFAGTHGKTSTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILSDSSDYVVIEADE 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S                       ++      T+   DH+D + T++AY  +     
Sbjct: 172 FDRSFHW--------------------LRPYMSVITSTDPDHLDIYGTKEAYLESFRHYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E +    +  I    +      MK     G +V     +    H + +   +      + 
Sbjct: 212 ELIQKGGTLVIHTDLE------MKPNVQEGVKVYEYSREKGDFHAENIRIKNGTIVFDMV 265

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++ +      P    + N + A  L    G  S  + + ++    V  RF+F   N 
Sbjct: 266 SPIENINDIELGQPIPINIENGIAAMALAQLSGCTSDELRKGMKSYAGVDRRFDFKIMND 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADI 412
           +   +  DYAH    +    K+++ I   R I V        +     M    AL   D 
Sbjct: 326 Q-HVLLSDYAHHPKEILQSAKSLKEIYPDRKITVIFQPHLYSRTNDFYMDFAKALSHFDE 384

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            ++T+  P  E+P        I   +  G+   + + + +  +  A E     DVLVV G
Sbjct: 385 VVLTEIYPAREEPIPGVTSALIYDNLDEGVEKQMIEKDNV--VAFAKE--RNFDVLVVLG 440

Query: 467 KGH 469
            G+
Sbjct: 441 AGN 443


>gi|85858524|ref|YP_460726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophus
           aciditrophicus SB]
 gi|122063269|sp|Q2LR50|MURD_SYNAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85721615|gb|ABC76558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophus
           aciditrophicus SB]
          Length = 453

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 129/408 (31%), Gaps = 45/408 (11%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             +   A+AQ  +A+V S                 I V+          A R        
Sbjct: 63  ADYGISALAQ-VDAVVPSPGVPPFHPVLKEAVKRCIPVISEL-----ELACRYLQTP--- 113

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++A+TGT+GK++  S + +I   SG   F  G   T          T    +        
Sbjct: 114 MIAITGTNGKTTTTSLIGEILSGSGRKVFVGGNIGTPLVEYVTGPQTADCAV-------- 165

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     VE SS  L    +D          N   DH++YH + +AY  A       
Sbjct: 166 ----------VEISSFQLQW--VDQFHAFVSILLNTTCDHVNYHGSFEAYR-AVKERIFN 212

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              K+  AI+ AD+  S  + +   +      +     + ++ +K   I    +      
Sbjct: 213 NQGKQDVAILNADEPDSAVLAESLSSPVFFFSTTKMVERGLYQEKDRLICLDGEGKQEFY 272

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    LPG   V N + A     A G     V+  +     +  R EF        
Sbjct: 273 PLSMI---RLPGAHNVENVMAAILASRACGCSPENVINAISGFSGIAHRIEFTREIGGVK 329

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                      +++  ++          I++   G D+D     +   +   +  + I  
Sbjct: 330 FYDDSKGTNVGAVKRAIETFSD-----PIILLMGGRDKDGDFETLSALLQDRVKALVIF- 383

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 E  E+I+  I  GI   +   +  EAI  A       DV+++
Sbjct: 384 -----GEARERIQERI-GGIVPTVLTPSLKEAIAAARRQACAGDVVLL 425


>gi|327330618|gb|EGE72364.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL097PA1]
          Length = 471

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 97/272 (35%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L   L   R +    GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRVVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   +I   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|315080330|gb|EFT52306.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL078PA1]
          Length = 471

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 97/272 (35%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L   L   R +    GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRVVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   +I   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|313791784|gb|EFS39895.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA1]
 gi|313802129|gb|EFS43361.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA2]
 gi|313838461|gb|EFS76175.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL086PA1]
 gi|314963082|gb|EFT07182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA1]
 gi|315077546|gb|EFT49604.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA2]
 gi|327452866|gb|EGE99520.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL092PA1]
          Length = 471

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 97/272 (35%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L   L   R +    GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRVVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   +I   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|297588289|ref|ZP_06946932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
 gi|297573662|gb|EFH92383.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
          Length = 441

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 134/395 (33%), Gaps = 42/395 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ S    + +      +   I VV +        A R++      I+A+TGT+GK++ 
Sbjct: 60  IILKSPGIRMDNPVILKANELNIEVVSDL-----ELAQRIFED--IKIVAITGTNGKTTT 112

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + ++   SG  +  IG                     +       +S   T+  +E 
Sbjct: 113 TSLMTKMLNDSGRKAISIGNIG------------------VGMLWEIYNSDKDTYFVIEC 154

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+       K       N+  DHID+H + Q Y NAK  + +         +   D
Sbjct: 155 SSFQLES--TKNFKPQYSCIINITPDHIDWHGSMQNYVNAKKNVLKNQDENCYTVL-NVD 211

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D Y +E  K   +    V +     K   +K      +       ++ KD      L G 
Sbjct: 212 DEYYEECKKFTKSNVYDVSTSTDVKKGSFIKDDSIYFSDSDCNKIIDLKDV----KLIGY 267

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L    L   IGI+   + + L     V  R EFV   S             ++ 
Sbjct: 268 HNYQNVLFCVTLAKLIGINDDSIRQTLMSFSGVEHRLEFVRELSGVKYYNDSKGTNVDAS 327

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +++       + +++   G D+          IA      A++     R    +K R
Sbjct: 328 VKAIESFD-----KNVIILAGGYDKKVSLDNFF--IAGKDKFKALILMGQTRDLFEKKAR 380

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +G        +  +A+  A ++    DV+++
Sbjct: 381 E---YGFGNIFLVDDMKQAVTQANKIAESGDVVLL 412


>gi|289426296|ref|ZP_06428042.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289426882|ref|ZP_06428608.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|295130334|ref|YP_003580997.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|289153461|gb|EFD02176.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289159971|gb|EFD08149.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|291375983|gb|ADD99837.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|313764734|gb|EFS36098.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA1]
 gi|313772516|gb|EFS38482.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL074PA1]
 gi|313807246|gb|EFS45733.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA2]
 gi|313809752|gb|EFS47473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA1]
 gi|313815799|gb|EFS53513.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA1]
 gi|313818292|gb|EFS56006.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA2]
 gi|313820054|gb|EFS57768.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA1]
 gi|313823137|gb|EFS60851.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA2]
 gi|313825586|gb|EFS63300.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA1]
 gi|313827825|gb|EFS65539.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA2]
 gi|313830661|gb|EFS68375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL007PA1]
 gi|313833881|gb|EFS71595.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL056PA1]
 gi|314915225|gb|EFS79056.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA4]
 gi|314918546|gb|EFS82377.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA1]
 gi|314919809|gb|EFS83640.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA3]
 gi|314925476|gb|EFS89307.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA3]
 gi|314931824|gb|EFS95655.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL067PA1]
 gi|314955980|gb|EFT00378.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA1]
 gi|314958375|gb|EFT02478.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA1]
 gi|314960273|gb|EFT04375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA2]
 gi|314968083|gb|EFT12182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA1]
 gi|314973663|gb|EFT17759.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA1]
 gi|314976256|gb|EFT20351.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL045PA1]
 gi|314983535|gb|EFT27627.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA1]
 gi|314987723|gb|EFT31814.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA2]
 gi|314990202|gb|EFT34293.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA3]
 gi|315085925|gb|EFT57901.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA3]
 gi|315096283|gb|EFT68259.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL038PA1]
 gi|315098266|gb|EFT70242.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA2]
 gi|315101043|gb|EFT73019.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA1]
 gi|315108235|gb|EFT80211.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL030PA2]
 gi|327325919|gb|EGE67709.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA2]
 gi|327332208|gb|EGE73945.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA3]
 gi|327442830|gb|EGE89484.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA2]
 gi|327446201|gb|EGE92855.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA2]
 gi|327447816|gb|EGE94470.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA1]
 gi|327451052|gb|EGE97706.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA3]
 gi|327453593|gb|EGF00248.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA2]
 gi|328753085|gb|EGF66701.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA1]
 gi|328753740|gb|EGF67356.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL020PA1]
 gi|328759170|gb|EGF72786.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA2]
 gi|328760584|gb|EGF74152.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL099PA1]
 gi|332675176|gb|AEE71992.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           266]
          Length = 471

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 97/272 (35%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L   L   R +    GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRVVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   +I   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|299534670|ref|ZP_07048002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
 gi|298730043|gb|EFI70586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
          Length = 449

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 115/366 (31%), Gaps = 52/366 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + +  +  +   +    G   T++         
Sbjct: 104 ELAFLISDAP---FIGITGSNGKTTTTTLIFDMLSKGSKNPLIAGNIGTVACGVAKEANQ 160

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               +                   E SS  L    +   K      TNL   H+DYH T 
Sbjct: 161 DDIIVT------------------ELSSFQL--MGIKTFKPKIAILTNLYDAHLDYHGTF 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y  AK  +       +      AD         ++H       S G     I      
Sbjct: 201 NNYAEAKFGVTRNQDDSDYFIY-NADQPIVVGYAAQSHAQKIPFSSKGRTANGISAD--- 256

Query: 284 AIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                 + TI  +G+ +     +  PG+  + N L A   CI +G D   + E L     
Sbjct: 257 ------ETTIYWQGEPYMDRANIALPGKHNLENILAAVAACILVGCDKEKMEEVLATFGG 310

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--- 398
           V  R +FV   +         A    + +  L   +       +++   G DR       
Sbjct: 311 VRHRTQFVREWNGRKIYNDSKATNCLATKSALDAFQA-----PVILLAGGLDRGHSFEEL 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           RP M  +      +    +   R  +  K       G+   +   N  +A++ A  M  +
Sbjct: 366 RPCMSHVKG----VVAFGETGLRFVEFAKSC-----GVQQTVIAQNVEDAVQYAAPMSAE 416

Query: 459 QDVLVV 464
            DV+++
Sbjct: 417 GDVILL 422


>gi|167759619|ref|ZP_02431746.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
 gi|167662745|gb|EDS06875.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
          Length = 487

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 111/358 (31%), Gaps = 31/358 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A++GT GK++  S +  I   +G     I     + +   + ++       L    +  
Sbjct: 142 IAISGTHGKTTTTSMLSHIL-LAGEMDPTISVGGILKAIGGNIKVGKSE---LFVTEACE 197

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +    H   + S                    N+  DH+D+ +       +    F +L
Sbjct: 198 YTNSFLHFFPKIS-----------------VILNIDEDHLDFFKDLDDIR-SSFHKFAKL 239

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           LPK+   II  +      + K       +                  +       +    
Sbjct: 240 LPKDGTLIINGNIDKLDCITKGLDCRIIKYGDDSSMDYSATNISHNKLGEASFDLVKAGV 299

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   + G+  V NAL A  +   +G+    + + L++      RFE+ G    G  
Sbjct: 300 FVDRISLSVNGDHNVSNALAAIAVSDLLGVSLDKMKKGLKEFTGTNRRFEYKG-EMDGVT 358

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVT 416
           I  DYAH    +   L   +      +  VF      R +       + AL  AD  +++
Sbjct: 359 IIDDYAHHPTEINATLTAAKYYPHRELWCVFQPHTYTRTKALFHEFVE-ALAHADHVVLS 417

Query: 417 DDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D     E        + I   +           +  +     +E   K D+L+  G G
Sbjct: 418 DIYAARETDTLGISSKDIADALKEKGCDAYYFSSFEDIQDFCVEKCQKGDLLITMGAG 475


>gi|262377183|ref|ZP_06070408.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
 gi|262307921|gb|EEY89059.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter lwoffii SH145]
          Length = 482

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 116/367 (31%), Gaps = 39/367 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           +GA  IVVS+A   ++          I VV   R+   L       +G      +AV GT
Sbjct: 80  KGANVIVVSTAIDKENPEIKTAIENRIPVV---RRAEMLGELMRYRHG------IAVAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +  +     +    +     ++    +  L                     
Sbjct: 131 HGKTTTTSLITCMLAEENMDPTYV-IGGLLNRTGMNAALG------------ASRYIVAE 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               +AS   L+         +A   TN+  DH+D +             F + LP    
Sbjct: 178 ADESDASFLHLE--------PMAAVVTNIDADHMDTYGGSFDVLKDTFIQFLQKLPFYGL 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E+M R                         +       +  E +     
Sbjct: 230 AVVCGDDANIREIMPRIARPLLTYGFNEDNDIRAVDVDQDGMQTHFT-VLRKEREPLRVT 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYV 360
              PG   V NAL A G+    G+  A +   LE    V  RFE  G         ++  
Sbjct: 289 VNQPGLHNVLNALAAIGIATDEGVSDASICRALEGFSGVGRRFEVQGEFAIEGGDVKLVD 348

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDD 418
           DY H    +E  +K  R     R +V+        + +       ++     D  ++ D 
Sbjct: 349 DYGHHPKEVEATIKAARQSHPDRRLVMMFQPHRYSRTRDCFDDFVEVLST-VDQLLLLDV 407

Query: 419 NPRSEDP 425
            P  E P
Sbjct: 408 YPAGEKP 414


>gi|242239991|ref|YP_002988172.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Dickeya dadantii Ech703]
 gi|242132048|gb|ACS86350.1| FolC bifunctional protein [Dickeya dadantii Ech703]
          Length = 422

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 113/386 (29%), Gaps = 30/386 (7%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V    + L L       +    +  V GT+GK +    +  I   +G+          +
Sbjct: 34  RVKQVAEHLQLL------QPAPWVFTVAGTNGKGTTCCTLAAILMAAGMRVGVYSSPHLL 87

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG-------LDQHRLDGIKLIA 206
               +        P  L          G   +S+     G         Q RLD + L  
Sbjct: 88  RYTERVRIQGQELPESLHCQAFADIDAGRNGISLTYFEFGTLAALQLFKQARLDVVILEV 147

Query: 207 GSFTNLG----RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           G    L      D      T  A  +               A I+  +  +        +
Sbjct: 148 GLGGRLDATNIVDADVAVVTSIALDHTDWLGNSRESIGREKAGIFRANKPAVVGEPDMPD 207

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +   V +      F           K         K    L             +AA   
Sbjct: 208 SIAAVAAEKGALLFRRGADWSFDVQKDAWRWQCGDKHIAGLPIPSVPLPNAATALAALQV 267

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
             + ID   ++    +   +PGRF+ V        + +D AH  ++   +   +  +   
Sbjct: 268 SGLDID-EDIIRLGLRNAALPGRFQIVREKPL---LILDVAHNPHAAGYLASRLNALPRY 323

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFI 440
           GR+ +V G   D+D    P        LAD       D PR    E++    + G   + 
Sbjct: 324 GRVRIVIGMLADKDI---PGTLAYLKPLADDWYCAPLDGPRGAGVEQLACH-LAGCGQY- 378

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +   A R A++    QD++VV G
Sbjct: 379 --ADVASAWRQAMQDAGPQDIVVVCG 402


>gi|332878268|ref|ZP_08445994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683719|gb|EGJ56590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 108/352 (30%), Gaps = 38/352 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GK++       I +++GL     G      +                   
Sbjct: 102 STIVAITGSNGKTTTTLLTHHIFKQAGLEVGLGGNIGYSFAELV---------------- 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SS  LD   ++          N+  DH+D +  +   + A     
Sbjct: 146 ---AHSNPPYYVLEISSFQLD--GIEHFAPHIAVLLNITPDHLDRYDYKFENYIASKFRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                     I  ADD    + +                   +   LK        +  T
Sbjct: 201 AMNQTANDYFIYDADDPVINDWLTTHPLKPKCIGFSIEKELSEGAFLKDNKIHIMLENQT 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             ++ ++            + N + AA     + I +A + E L+       R E V   
Sbjct: 261 TVIDVEEISLKGKH----NIKNTMAAAVAARLVNIRNASLRESLKGFQGAAHRLEEVKVV 316

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I    A   NS+   L  I+T      IV    G D+      ++  +   +  I
Sbjct: 317 EGVTYINDSKATNVNSVYFALDTIKT-----PIVWIVGGQDKGNDYNSLLPYVHQKVKAI 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN        I     + I   +E  +  EA++ A       D +++
Sbjct: 372 VCLGVDNT------PILQSFYNVIDNMVETRSMEEAVKMAQRFATAGDTVLL 417


>gi|226327918|ref|ZP_03803436.1| hypothetical protein PROPEN_01799 [Proteus penneri ATCC 35198]
 gi|225203622|gb|EEG85976.1| hypothetical protein PROPEN_01799 [Proteus penneri ATCC 35198]
          Length = 432

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/381 (13%), Positives = 107/381 (28%), Gaps = 41/381 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ V+GT+GK +    ++ I   SGL          +    +           L+
Sbjct: 47  RPAPKVITVSGTNGKGTTCHMLESILMASGLKVGVYSSPHLVRYTERVRIQGK----ELS 102

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +         +     + S    +   L  +KL   +  ++    +       A      
Sbjct: 103 EGAFCEVFAEIEQARGDISLTFFEYGTLAALKLFQQAQLDVVILEVGLGGRLDATNIVDA 162

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV------CAI 285
            +                D       K           VG       + +V         
Sbjct: 163 DIAAITSIALDHTDWLGADREHIGHEKAGIFRANHYAVVGEPDMPHSIAQVANEKHAKLF 222

Query: 286 HNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDS-----A 330
                 + ++EG+ + +            P         A+      +            
Sbjct: 223 RRGTDWSFAIEGEHWHWRCVDCEFDALPIPNIPLANAATAMGVICCLLRSDDKVSQAITE 282

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVV 387
             +        +PGRF+     S+   +  D AH  ++   + + +  +      ++ +V
Sbjct: 283 QSIVEGMSHAQLPGRFQV---ISQHPLVIFDVAHNPHAAGYLAEKLSQLPQKSDTQMRIV 339

Query: 388 FGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            G  GD+D       G +A    LAD   V    P +E        +   +   +   + 
Sbjct: 340 VGMLGDKDIA-----GTLACLTPLADHWYVA---PLNEFRGASAEVLAQHLDKPMVFDSV 391

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A + AI      D++VV G
Sbjct: 392 ENAWQQAISDAAPNDIVVVCG 412


>gi|88801288|ref|ZP_01116816.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
 gi|88781946|gb|EAR13123.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
          Length = 460

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 114/363 (31%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA++        I+ +TG++GK++    V +I + +GL+    G               
Sbjct: 110 EFAAKYT---SATIVGITGSNGKTTTTMLVHRILKDAGLNVGLAGNIGVS---------- 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  VE SS  LD   ++         TN+  DH+D ++  
Sbjct: 157 ---------FAQQVAEVSHENYVVELSSFQLD--GIEKFSSHIAILTNITPDHLDRYEYD 205

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG--CRVLSVGYQGKFIHLKK 281
              + A      +   +    I  ADD      +K+                     LK 
Sbjct: 206 FEKYVASKFRITQNQKESDYLIYDADDIAINTWLKQHKIKAKLVPFSLKKELAYGAFLKG 265

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              I N  + TI +             +  +   + A      + I    + E L     
Sbjct: 266 NNIIININKETIKMPISTITVKGKHNVKNTMAATMAA----QLLQIRKEAIKESLANFEG 321

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E V        I    A   N+    L+        R  V    G D+      +
Sbjct: 322 VEHRLENVAKVKGVEYINDSKATNVNATFYALE-----CMDRQTVWIVGGVDKGNDYNDL 376

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +   +  I  +  DN      +KI+    + +   +E     EA++ A ++    D 
Sbjct: 377 LPLVREKVKAIVCLGVDN------QKIKDMFGNVVDIVVETAGAEEAVKVAHKLAEDGDA 430

Query: 462 LVV 464
           +++
Sbjct: 431 VLL 433


>gi|293610054|ref|ZP_06692355.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827286|gb|EFF85650.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 448

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 128/408 (31%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 82  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 110 ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 155 -----IVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+    +    +    +    
Sbjct: 204 GVKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGMLWLARGLQRLIKSS 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             ++    G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 264 DLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVHDVRYYN 320

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 321 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFGPLRSSI-EKYAKVVVLI 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+  +      +DV+++
Sbjct: 379 -----GEDAPVIEQAI-QGATKILHAATLKEAVELSQRETQAEDVVLL 420


>gi|322376972|ref|ZP_08051465.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
 gi|321282779|gb|EFX59786.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
          Length = 450

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TATDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K   +     +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELASKTQATVVPFSTLEKVDGAYLEDGQLYFRGEVVMAANEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDEIKGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNNKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 SVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|238026133|ref|YP_002910364.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia glumae BGR1]
 gi|237875327|gb|ACR27660.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia glumae BGR1]
          Length = 466

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 133/438 (30%), Gaps = 57/438 (13%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLF 105
           VAI      GH      I  GA A+V S+A    +          + +V   R   L+  
Sbjct: 53  VAI------GHDAAN--IE-GANAVVTSTAVRSDNPEVLAARRLGVPIVP--RAVMLAEL 101

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
                G      +A+ GT GK++  S V  +    G   +F IG    + S   + RL +
Sbjct: 102 MRLKQG------IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGS 153

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              I      S  S                       +  +    TN+  DH+D +    
Sbjct: 154 GDFIVAEADESDASFLN--------------------LYPVIEVITNIDEDHMDTYGHDF 193

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A        F + LP     ++  DD   ++++        R                  
Sbjct: 194 ARLKQAFIEFTQKLPFYGSVVVCVDDPNVRQILPFISKPVVRYGLAPDAEVRAEQVAAR- 252

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   I         +  LPG   V NAL A  +   +G+  A + + L   + V  
Sbjct: 253 DGRMHFTAIREGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGR 312

Query: 345 RFEFVGTNSR-----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
           RF+  G  +         +  DY H    +   +   R    GR  +V      R    R
Sbjct: 313 RFQRYGEIATADGAGSYTLVDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTR 371

Query: 400 PIMGKIALDLA--DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIR 450
               +    L+  D  ++T+     E P      E +   +   G           E   
Sbjct: 372 DCFEEFVNVLSTVDELVLTEVYAAGEAPIPTASGEALARALRASGRVDPAFVATVDEVPA 431

Query: 451 TAIEMLNKQDVLVVAGKG 468
              + +   DV++  G G
Sbjct: 432 ALAQRVRAGDVVITMGAG 449


>gi|291459276|ref|ZP_06598666.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418530|gb|EFE92249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 452

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 117/375 (31%), Gaps = 42/375 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            + A+TGT+GK++  S V +I +     +  +G               T   +    + +
Sbjct: 108 KLAAITGTNGKTTTVSLVGEILRSHFSDTHVVGNIGNPF---------TAEALETEDSSA 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                      +E SS  L+   +   +    + TN+  DH+D H++ + Y   K  +  
Sbjct: 159 ---------TVIEVSSFQLET--IMDFRPDVSAITNITPDHLDRHKSMKNYIRIKESIAM 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++   + + +D   +   K        +     +               ++     
Sbjct: 208 NQTEEDCVVLNH-EDPELRSFGKGKELKPKVLWFSSERELKEGFFLRKDALFFREAGKEA 266

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E         L G+    N + A  +   +G+    ++   +    V  R EFV   S  
Sbjct: 267 EELLKVRELKLLGKHNYENVMCAMAVSYRMGVPMRKIISVCKSFRPVEHRIEFVRKRSGV 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
                      ++    L+ +        +++ G G D+       + +    +  + ++
Sbjct: 327 SYYNDSKGTNVDAAIQALRAMPG-----PVILIGGGYDKHVDFDDWVKEFKGRVKYLVLI 381

Query: 416 TDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV----AGKGH- 469
                  +   +I       G    +   +  EA+R      +  D +++    A  G  
Sbjct: 382 ------GQTRSQIANCAKKYGFKNIMFAEDMDEAVRDCAAYADSGDFVLLSPACASWGMF 435

Query: 470 ----ETVHIVTNGEK 480
               E   I  +  K
Sbjct: 436 KDYEERGQIFKDCVK 450


>gi|229174579|ref|ZP_04302109.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
 gi|228608884|gb|EEK66176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
          Length = 450

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 127/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLAFEMLKEGQKHPIIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K+              E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKENALC-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKVYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLVPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|260172405|ref|ZP_05758817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           D2]
 gi|315920701|ref|ZP_07916941.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694576|gb|EFS31411.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 444

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 115/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD     + +     G +     +           
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPI---IRQELAKHGLKAHLYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++ ++T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 247 VEDHEVKITEPIAFNMEQEELALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +       G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHEFFD--RFGLPVADVQTGMKDAVEAAYKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|257784288|ref|YP_003179505.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
 gi|257472795|gb|ACV50914.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
          Length = 467

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 88/282 (31%), Gaps = 11/282 (3%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               E SS  L       +        N+  DH+++H + +AY  A        L     
Sbjct: 162 WFVAELSSFQLAT--TQKLHPHVAMLLNITPDHLEWHGSLEAYA-AAKEKIFANLDVNDL 218

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI+   D +   V  R    G  V  +                         E +     
Sbjct: 219 AIVSDLDEFCLAVSSRLEARGISVCHLAQTDPGTQNAAFVRNGALVVRLSGKEMELVATD 278

Query: 304 FPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                        +AA  C + +GID   +   L     +  R E V T +    +    
Sbjct: 279 ALHIRGMHNALNALAAAACGLFLGIDIVSIRHALLDFMPLEHRIEPVKTINGVLYVNDSK 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A  ++S+E  L +       + I++   G D+         K++   A      +  PR 
Sbjct: 339 ATNTDSVEKSLTSFPD----KDIILLLGGHDKGTELDKFAQKVSATCAYAICFGEAGPRF 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +    +  G    +E+ +  EA   A+E+     V+++
Sbjct: 395 ---AEALRHVSGGRAEVVEEPHLREAFAHAVELARPGFVVLL 433


>gi|222097358|ref|YP_002531415.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Bacillus
           cereus Q1]
 gi|254766038|sp|B9IVY9|MURD_BACCQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221241416|gb|ACM14126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Q1]
 gi|324327812|gb|ADY23072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 450

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|330997824|ref|ZP_08321659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569712|gb|EGG51477.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 444

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 113/352 (32%), Gaps = 39/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I +++G +    G                          
Sbjct: 103 AKMICITGSNGKTTTTSLIYHIFKKAGYNVGLAGNIG-------------------QSLA 143

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +   +  +E SS  LD   +   +       N+  DH+D +      +       
Sbjct: 144 LQVAEKDYDYYVIELSSFQLD--NMYRFRANIAVLLNITPDHLDRYDHCMQNYVDAKMRI 201

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   +    + + DD   ++ +++      +      + + +          +  +   
Sbjct: 202 LQNQEETDAFVYWNDDPIIRKELEKYQIKAKKCPFSILKKEGMIGY---LADGQYVIEYP 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  +YN+L A       G+ + ++ + L     V  R E V     
Sbjct: 259 TPFNMEQESLALTGKHNMYNSLAAGITADIAGVKNEVIRQSLSDFEGVEHRLEKVVRVRG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-MGKIALDLA-DI 412
              I    A   ++    L++++T T           G +D+G     + ++       +
Sbjct: 319 VDYINDSKATNVDACWYALESMKTPT-------VLILGGKDKGNDYEAIAELVRKKCVGL 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  DN +             GIP   +  +  + +     M    D +++
Sbjct: 372 VFLGADNGKLHAFFDSF-----GIP-IADTHSMKDCVEACYRMARPGDTVLL 417


>gi|315645748|ref|ZP_07898872.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
 gi|315279226|gb|EFU42536.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
          Length = 458

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 142/417 (34%), Gaps = 51/417 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA+ +V S+A S  +       + N P+L          + A  L  +     +AV G 
Sbjct: 62  QGADLVVYSTALSKDNVERVEAEKLNIPVLH------RAQMLARLLNER---KGVAVAGA 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ +S +  + +  G+                   +     + +         + V 
Sbjct: 113 HGKTTTSSMIALVMEECGVD---------------PTFIIGGEIMNVGTNAKAGEGEHVV 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             + E+    L  H   G+        N+  DH++ ++       A    F   +  +  
Sbjct: 158 AEADESDGSFLQYHPWLGV------VLNIEADHLENYEGDFNRLKAAYVQFLSQIKPDGT 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD   + ++                 ++     V        + +    +     
Sbjct: 212 AVVCADDHNIQAILPDLKCNVTTYGIHSD-AEYTATNLVLGDRQVSFMMLHNGMELGTVE 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  + G  +  DYA
Sbjct: 271 LSVPGKHNVYNAMATVICCLKGGISFEAIVEAIVKFNGAKRRFQVLG-EADGILVIDDYA 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPR 421
           H    +E  +   +  T  RII VF      R         +   + AD  I+TD  +P 
Sbjct: 330 HHPTEIEATISAAKA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFSE-ADEVIITDIYSPA 387

Query: 422 SED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E            E I      G      K +    +    + + + D+++  G G
Sbjct: 388 GEKQIEGISSGKLVELIVQNSNAGARYLPTKEDV---LNDLKDRVKEGDLVLTMGAG 441


>gi|189462921|ref|ZP_03011706.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
 gi|189430348|gb|EDU99332.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
          Length = 444

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 111/353 (31%), Gaps = 39/353 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I +++GL+    G                         
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIG-------------------QSL 142

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++     +  +E SS  LD   +           N+  DH+D +  +   +      
Sbjct: 143 AYQVAECNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDYKMQNYVDAKFR 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +        I + DD     + K  H  G       +  K           NK   T 
Sbjct: 201 IIQNQTDNDAFIFWNDDPV---IQKELHKYGIHGHYYPFAEKKEEGLAAFVEQNKVYFTK 257

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +E         L G   ++N++ A       GI    + E L     V  R E V    
Sbjct: 258 PIEFNMEQEELALTGTHNLFNSMAAGISANIAGIRKECIREALSDFKGVEHRLEKVTRVR 317

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADI 412
               I    A   NS    L +++T    + +++    G +D+G     +  +  +    
Sbjct: 318 GVDYINDSKATNVNSCWYALNSMKT----KTVLIL---GGKDKGNDYNEIADLVKEKCSG 370

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I    +       +   +   G      +  +  +A+  A  M  K + +++
Sbjct: 371 LIFLGLH------NEKLHDFFDGFGLPIADVQSMKDAVDAAYRMAKKGETVLL 417


>gi|327458768|gb|EGF05116.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1057]
          Length = 459

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASNKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEAFHPQIAVITNLMPTHLDYHGSLEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVVPFSTTEKVDGAYIEGDV--------LTFRGEAIMQVAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLHGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+     R       RA  + G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAAR-----VKRAADLAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A       D++++
Sbjct: 403 VS-YLDATDVRDAAHKAYSQAEPGDIVLL 430


>gi|160883882|ref|ZP_02064885.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
 gi|237716646|ref|ZP_04547127.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
 gi|237720376|ref|ZP_04550857.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_2_4]
 gi|262405421|ref|ZP_06081971.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_22]
 gi|293370476|ref|ZP_06617029.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CMC 3f]
 gi|294646202|ref|ZP_06723856.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CC 2a]
 gi|294809131|ref|ZP_06767849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298480582|ref|ZP_06998779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           D22]
 gi|156110612|gb|EDO12357.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
 gi|229442629|gb|EEO48420.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
 gi|229450127|gb|EEO55918.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_2_4]
 gi|262356296|gb|EEZ05386.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_22]
 gi|292634468|gb|EFF53004.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CMC 3f]
 gi|292638420|gb|EFF56784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CC 2a]
 gi|294443685|gb|EFG12434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295086278|emb|CBK67801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           xylanisolvens XB1A]
 gi|298273403|gb|EFI14967.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           D22]
          Length = 444

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 115/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD     + +     G +     +           
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPI---IRQELAKHGLKAHLYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++ ++T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 247 VEDHEVKITEPIAFNMEQEELALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +       G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHEFFD--RFGLPVADVQTGMKDAVEAAYKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|121595060|ref|YP_986956.1| FolC bifunctional protein [Acidovorax sp. JS42]
 gi|120607140|gb|ABM42880.1| FolC bifunctional protein [Acidovorax sp. JS42]
          Length = 441

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 117/398 (29%), Gaps = 36/398 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +   A RL  +    ++ V GT+GK S  + ++ +  ++G  +        +    +
Sbjct: 27  LERVGEVARRLGLRFNCPVITVAGTNGKGSTCAMLEAVALQAGYRTGVYTSPHLVHFEER 86

Query: 159 DNRLT----------TPSPIYLAKALSYLSSQGVTHVSVE------ASSHGLDQHRLDGI 202
                          +   +  A+  +                    S   LD   L+  
Sbjct: 87  CRIRGEIVDAASLVASFEAVERARTQNGNEVTLTYFEFTTLAILRHMSLSLLDVAILEVG 146

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMK 258
                  TN+         +        +    E + +E   I+                
Sbjct: 147 LGGRLDATNIIDADCAVITSVDIDHVEFLGPDRETIGREKAGIMRTGRPVVVSDPMPPQS 206

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +A      +   G+  +                  G  +  L           AL A
Sbjct: 207 VIDHAREIGADLWRFGQDFNFSGDKQQWAWAGRGRRYAGLAYPALRGANQLVNASGALAA 266

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                     +A  +     L  +PGRF+ V        + +D AH  +S+  +  N+  
Sbjct: 267 LEAVRERLPITAQAVRAGLALVELPGRFQIVPGQPT---LVLDVAHNPHSVAALTANLDA 323

Query: 379 I-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA-----E 431
           +        VFG   D+D      M      + D    TD   PR+E    ++      +
Sbjct: 324 MGYFPTTHAVFGAMADKDL---APMLAKVGPVIDRWYFTDLPTPRAETAASLQQKWNALQ 380

Query: 432 IIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ G    +      N  EA+R A+E  +  D +VV G
Sbjct: 381 MVAGGRREVATSLHANPEEALRAAVEAADPADRIVVFG 418


>gi|229117409|ref|ZP_04246785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
 gi|228666019|gb|EEL21485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
          Length = 450

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 126/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGRKHPIIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +     F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVESFQPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKIIFSTAKENEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   +VT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---LVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A     + DV+++
Sbjct: 383 ---PKLVRAAEKVGLDIIESVDTLDEAVVKAYAHSTEGDVILL 422


>gi|255657209|ref|ZP_05402618.1| putative folylpolyglutamate synthase [Clostridium difficile
           QCD-23m63]
 gi|296451952|ref|ZP_06893667.1| possible tetrahydrofolate synthase [Clostridium difficile NAP08]
 gi|296879654|ref|ZP_06903631.1| possible tetrahydrofolate synthase [Clostridium difficile NAP07]
 gi|296259143|gb|EFH06023.1| possible tetrahydrofolate synthase [Clostridium difficile NAP08]
 gi|296429367|gb|EFH15237.1| possible tetrahydrofolate synthase [Clostridium difficile NAP07]
          Length = 432

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 83/232 (35%), Gaps = 17/232 (7%)

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D     +         + + V +    I    + +          ++    D 
Sbjct: 195 VLVYDQTDEAKDVIKSVCKEKKAKYIEVNFDDVNIKKSDINSQIYDCT---VMKENYRDL 251

Query: 303 LFPLPGEFQVYNALVAAGLCIAIG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              L GE Q+ N+++A  +   +         +   +         PGR E +       
Sbjct: 252 EIKLIGEHQINNSILAISVIKYLKDINKLANINEESIRKGLIKTKWPGRIEKIKE---NP 308

Query: 357 RIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
              +D AH  +  + + K + +     ++ ++ G   D+D      + ++ L   +  I 
Sbjct: 309 IFIIDGAHNEDGAKSLAKALDKNFKDRKLTLLIGMLEDKDID---SVLEVLLPHFNKVIT 365

Query: 416 TDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           T   NPR+ + + +R +++  +     K    +A+   +E  ++ D+++ AG
Sbjct: 366 TTPINPRAINSDILREKVLKYVDDVTSKHEIEDAVNYTLETSSEDDIIISAG 417


>gi|304407502|ref|ZP_07389154.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343453|gb|EFM09295.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
          Length = 444

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 134/418 (32%), Gaps = 47/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ +V S+A S  +    A    N P+L      + LS   +          +AV G 
Sbjct: 46  KGADLVVYSTALSKDNVERKAAEELNIPVLHRA---QMLSRLMNA------GKGVAVAGA 96

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ +S +  + +               +       +     + +         + V 
Sbjct: 97  HGKTTTSSMIALVME---------------TCKIDPTYIIGGEIVNVGTNAKAGKGEYVV 141

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             + E+    L  H    I       TN+  DH++ ++            F   +  +  
Sbjct: 142 AEADESDGSFLQYHPTIAI------VTNIEPDHLENYEGDFNKLKEAYVQFLHQVKPDGK 195

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK----FIHLKKVCAIHNKQQVTISVEGKD 299
           AI+  DD   +E++        R   +   G           +     K    +  +G+ 
Sbjct: 196 AIVCIDDTNLQEMLPSLRGGALRNDQIVTYGIDQEANYRASDLQLGDRKVSFILHRDGET 255

Query: 300 F-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    +PG   VYNA+     C+  G+    V E +        RF  +G       +
Sbjct: 256 LGNVELSVPGRHNVYNAMATIITCLEAGLSFESVAEAIRLFRGAKRRFHVLG-EKNDILV 314

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
             DYAH    ++  +   +  T  RI+ VF                 A   AD  I+TD 
Sbjct: 315 IDDYAHHPTEIQATISAAKA-TGKRIVAVFQPQRYTRTYFLLEQFSCAFGEADEVIITDI 373

Query: 419 -NPRSED------PEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +P  E         K+   I+            + E +   I      D+++  G G
Sbjct: 374 YSPAGEQQIEGVHSRKLVEMIVQNSNANTAYVPTKEEVLERLIASKKPGDLIITMGAG 431


>gi|224536612|ref|ZP_03677151.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521703|gb|EEF90808.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 444

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 113/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       ++    +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----ATDQHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYNHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + +     G       +           
Sbjct: 190 MQNYVDAKFRITQNQTPEDAFIFWNDDPI---IKRELDKHGLCAHLYPFSAMKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI+   +   L     V 
Sbjct: 247 VEDGEVEINEPIAFNMEQEKLALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   NS    L++++T       V+   G D+      I  
Sbjct: 307 HRLEKVATVRGVEFINDSKATNVNSCWYALQSMKT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E        +  G+P    +    +A+  A  +  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHDFFDRM--GLPVADVQTGMKDAVDAAFRLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|189220191|ref|YP_001940831.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum
           V4]
 gi|189187049|gb|ACD84234.1| UDP-N-acetylmuramate-alanine ligase [Methylacidiphilum infernorum
           V4]
          Length = 483

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 138/395 (34%), Gaps = 44/395 (11%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           + +    +  + V+GT GK++ +S +  I +  S   SF IG      +F    R T   
Sbjct: 109 KFFFLQGKQNIVVSGTHGKTTTSSLLAWIFESASLNPSFLIG--GLPKNFTSGCRYTRGD 166

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              L       +         +  S  L                N+  DH D        
Sbjct: 167 YWILEGDEYDTAY-------FDKRSKFLHY------LPQTVIINNIEYDHADIFANLGEI 213

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A  +   +L+P+    II  DD    E+ K +      V           +  V    
Sbjct: 214 LLA-FKRLIQLIPRNGHLIIPEDDPNIVELAKSSLAPVYTVGFGKEAEF--RITDVLYDQ 270

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +  +  E     F  P+PGE+ V NA +        GI    + +       V  R 
Sbjct: 271 RGSRFRMLGEE----FFLPVPGEYNVRNAAMCLAAAKLYGIKPEQISQGFASFLGVKRRL 326

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           E +G  + G ++  D+ H   ++   ++ +R    S R+  VF    +    +R +  + 
Sbjct: 327 EVLG-EACGIQVLDDFGHHPTAIYKTIQAVRQRYPSRRLWAVFEPRSN--TTRRAVFQQE 383

Query: 406 ---ALDLADIAIVT-----DDNPRSE--DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIE 454
              AL  AD  +++     D    SE   PE+I  E+   GIP F    +  E ++  +E
Sbjct: 384 LPQALAGADGVVISEVANKDGLSPSERLKPEQIAQELGKKGIPSFF-CASPQEILQKLLE 442

Query: 455 MLNKQDVLVVAGKG--HE-TVH--IVTNGEKKMSV 484
           +L   D++V    G  H        + N +K    
Sbjct: 443 VLRAGDIVVFFSNGSFHGIPYRLVEILNNKKDHFD 477


>gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
 gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
          Length = 435

 Score = 61.1 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 123/348 (35%), Gaps = 44/348 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+A+TGT+GKS+  + V++I + +       G                         LS
Sbjct: 94  KIIAITGTNGKSTTVALVERILKGASKRVIACGNYGLP--------------------LS 133

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               +   +  VEASS+ L+   +D  K    +  N+  DH+ +H +   Y  AK ++F+
Sbjct: 134 EAIYENAEYYVVEASSYQLE--FIDKFKPNIAAILNIAFDHLSWHGSMDNYIEAKKKIFK 191

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L  +               +K   ++                +       K  V ++ 
Sbjct: 192 NQLEDDFF-------------IKNDSDSYIFDGKANLFLVSKRDRNADCFFEKNGVIVNR 238

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L G     N   AA + +  GI+   + E +  +  +  R EFV      
Sbjct: 239 PEYLRIDKTGLFGSKVFENIAFAALIGLLCGIEKKTIKEVVGTMSNLEHRIEFVDEIDGV 298

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
                  A   +++E     I +   G  IV+   G  + +    ++  +    A   +V
Sbjct: 299 KFYNDSKATNLDAVEA---AINSFDEGIKIVIILGGKHKGESYSRLLP-LLEKRARAVVV 354

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  ED + I  E+   +P  +   N   A+R A E+ +K DV++
Sbjct: 355 -----YGEDRKVILNELDGFLPVPLPAVNIWGAVRAAFEVASKDDVVL 397


>gi|322807843|emb|CBZ05418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum H04402 065]
          Length = 458

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 116/360 (32%), Gaps = 47/360 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD  ++              ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNNLLVLNKDDDLTNEM----------ENEALGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+                 L+AA   +   +    +         V  R E
Sbjct: 260 SNNKLTIQGKEVCDSKDINLKGRHNIANLLAAFCMVNKYVSIDSMKYVAINFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       + +++   G D+     P+    A 
Sbjct: 320 FIREVNGVKYYNDSIASSPSRTLAGLNSFE-----KPVILIAGGYDKKIPFEPL----AE 370

Query: 408 DLADIA---IVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              D     I+  D  N      EK+ +         +   +  EA++ A  M  K D++
Sbjct: 371 GGYDKIKILILMGDTKNKIKSAFEKVISH-KKCEMEIVTVNSMEEAVKVADNMAEKGDII 429


>gi|305680833|ref|ZP_07403640.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659038|gb|EFM48538.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 477

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 143/427 (33%), Gaps = 66/427 (15%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    + +   N P++   +    L    +          + + GT GK
Sbjct: 72  VVVTSFAAIPQDNPELVAAREQNIPVIRRSDL---LGELMT------GSTQVLIAGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G+                         I      +  ++   +   
Sbjct: 123 TSTTSMAVVAMQAAGMDPS--------------------FAIGGQLNKAGTNAHQGSGHC 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
             A +   D   L          TN+  DH+D+  T +AYF      F   L      ++
Sbjct: 163 FVAEADESDASLLR-YSPDIAVVTNIEPDHLDFFHTPEAYFQV-FDDFASRLTDTGVLVV 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-------LKKVCAIHNKQQVTISVEGKD 299
             DD ++  + +R                  H       ++ V          + V  ++
Sbjct: 221 CLDDEHAAALGERQKTKVTVRGYGSAAAAERHPDIAYTVVESVAVADQISHAHMRVGERE 280

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRG 355
            +    +PG   V NA  A    +  G D A + + + +   V  RFEF G     + RG
Sbjct: 281 VEVAMQIPGTHMVLNAAAALTAGVLAGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRT----ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
             +Y DYAH    +  +L   R       SG++IVVF      R Q       + AL LA
Sbjct: 341 VEVYDDYAHHPTEVRAVLTAAREKLAARGSGQVIVVFQPHMYSRTQEFAAEFAE-ALSLA 399

Query: 411 DIAIVTDDNPRSEDPEK------IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           D A+V D     E P        I   + + +   P F          +T  E+ +  D+
Sbjct: 400 DAAVVLDIYGAREQPHDGITSQLIIDRMTNKVVHQPNFSLVP------QTVAELAHPGDM 453

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 454 VITMGAG 460


>gi|239502056|ref|ZP_04661366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB900]
          Length = 448

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 126/408 (30%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 82  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 110 ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 155 -----LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+         +    +    
Sbjct: 204 GAKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKSS 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             ++    G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 264 DLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVHDVRYYN 320

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 321 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFSPLRSSI-EKYAKVVVLI 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+         +DV+++
Sbjct: 379 -----GEDAPVIEQAI-QGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|169634628|ref|YP_001708364.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii SDF]
 gi|260556380|ref|ZP_05828599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
 gi|169153420|emb|CAP02557.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii]
 gi|260410435|gb|EEX03734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
          Length = 455

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 126/408 (30%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 89  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 117 ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 162 -----LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+         +    +    
Sbjct: 211 GAKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKSS 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             ++    G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 271 DLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVHDVRYYN 327

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 328 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFSPLRSSI-EKYAKVVVLI 385

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+         +DV+++
Sbjct: 386 -----GEDAPVIEQAI-QGATKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|91202857|emb|CAJ72496.1| similar to multifunctional folylpolyglutamate
           synthase/dihydrofolate synthase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 464

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 14/191 (7%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           L  +                             +    +               +     
Sbjct: 265 LCNIKTWQGVYGNLFIPLMGIHQAK-----NCAMALGALDVLREHGKISIDNETIREAFT 319

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQG 397
               PGR E +G       I +D+AHT  S+  + + +       +++V+ G   D+D  
Sbjct: 320 HVRCPGRIEVLGETPL---IVLDFAHTVESMAALRETLFEHFTFNKLVVILGFSQDKDID 376

Query: 398 KRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM 455
               + +  +  A+   VT   N R+  PE++  +I            +  +A+  A   
Sbjct: 377 N---ILREIVPCANDIFVTKSTNSRAVPPEELAKKIKAVYGKRAEICNSARDAVIAAQHA 433

Query: 456 LNKQDVLVVAG 466
            +  D+L + G
Sbjct: 434 ASPDDLLCITG 444


>gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
 gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
          Length = 450

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIVGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G +    G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQNGLLSGNIGYPASQVAQ---TATDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +   +   +   + +     +KE
Sbjct: 174 -MGIQEFHPEIAVITNLMPTHIDYHGSFEDYVAAKWNIQSNMTAADYLVLNFNQ-ELAKE 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  + + A     ++           +             E         +PG   V NA
Sbjct: 232 LATKTNAAVVPFSTLEKVDGAYLEDGLLY--------FRGEKVMAADEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV   +         +     +    K 
Sbjct: 284 LATIAVAKLRGVDNETIKETLSAFGGVKHRLQFVDQINGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+I+      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERIKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVDATDIADATRKASELAEEGDVVLL 421


>gi|238021216|ref|ZP_04601642.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
 gi|237868196|gb|EEP69202.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
          Length = 472

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 130/426 (30%), Gaps = 59/426 (13%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGT 123
           GAE +V S+A    +    A I  + P++     R   L+              +A+ GT
Sbjct: 64  GAEVVVASTAIKQDNPEIQAAIARHIPVI----PRAMMLAEIMRFRES------IAIAGT 113

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S           ++  +G      +F    +LT       A   + L      
Sbjct: 114 HGKTTTTSL----------TASILGAAGLDPTFIIGGKLTA------AGTNAKLGKGTWM 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S           +  +    TN+  DH+D +             F   +P    
Sbjct: 158 VAEADESDASFLY-----LSPVFTVITNIDEDHMDTYNHDADKLRQAFIDFVHRMPFYGK 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----K 298
           A +  D A  + ++ +                      V     + Q T++ +      +
Sbjct: 213 AFLCIDSANVRAILPKIQKPFATYAIDDETADLW-ASNVRTHDAQMQFTVNRKHADNSVQ 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR- 357
            FD      G   V NAL + G+ +        + + L     V  RF+  G  +     
Sbjct: 272 TFDVTLNCAGRHNVLNALASIGVALECKAPVEAIQQGLATFGGVGRRFQSYGEINLPQGG 331

Query: 358 ---IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
              +  DY H    ++  L   R        +V      R    R +       L   D 
Sbjct: 332 KALVIDDYGHHPVEMQATLSAARGAFPNNR-LVLAFQPHRYTRTRDLFEDFVTILNSVDA 390

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------IEMLNKQDVL 462
            ++TD     E+P  I A     +   +    ++E I  A            +L   DV+
Sbjct: 391 LVLTDVYAAGEEP--IVAADSRALTRAVRVHGKLEPIYCADVNAVPETLLHNVLQDGDVV 448

Query: 463 VVAGKG 468
           +  G G
Sbjct: 449 LTMGAG 454


>gi|226711953|sp|A3M1C6|MURD_ACIBT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193076113|gb|ABO10720.2| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 17978]
          Length = 448

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 125/408 (30%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 82  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 110 ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 155 -----LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+              ++   
Sbjct: 204 GAKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWL---ACGLQRLI 260

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 261 KSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVHDVRYYN 320

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 321 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFSPLRSSI-EKYAKVVVLI 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+         +DV+++
Sbjct: 379 -----GEDAPVIEQAI-QGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|167758768|ref|ZP_02430895.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
 gi|167663508|gb|EDS07638.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
          Length = 450

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 98/287 (34%), Gaps = 19/287 (6%)

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
               T    E SS  L+   +   +    +  N   DH++ H T +AY NAK  +     
Sbjct: 155 MNENTITVAEMSSFQLES--IVDFRPKVSAILNFTPDHLNRHHTMEAYVNAKKNIARNQG 212

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P++   + Y +D  ++E  K+         S     K I+L+    I+   +        
Sbjct: 213 PQDYCILNY-EDGLTREFGKKVKAQVLYFSSQRKLEKGIYLEDGNIIYRDGEEVSVCRVD 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
           +        G     N + A  +    G+    + + +++   V  R E+V   +     
Sbjct: 272 ELQL----LGTHNYENVMAAVAMAYVYGVPMETIRKSIKEFKGVEHRIEYVTEKNGVAYY 327

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
                   ++    ++        R  V+ G G D+D      +      +  + ++   
Sbjct: 328 NDSKGTNPDAAIKGIQA-----MNRPTVLIGGGYDKDSAYTDWIESFDGKVKKLVLL--- 379

Query: 419 NPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  EKI  +    G   ++      EA+ TA ++    D +++
Sbjct: 380 ---GATKEKIAKDANACGFKDYLFADTFEEAVLTAAKIAMPGDAVLL 423


>gi|126640338|ref|YP_001083322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ATCC 17978]
          Length = 435

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 125/408 (30%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 69  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 96

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 97  ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 141

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 142 -----LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 190

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+              ++   
Sbjct: 191 GAKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWL---ACGLQRLI 247

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 248 KSSDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVHDVRYYN 307

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 308 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFSPLRSSI-EKYAKVVVLI 365

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+         +DV+++
Sbjct: 366 -----GEDAPVIEQAI-QGATKILHAATLKEAVELCQRETQAEDVVLL 407


>gi|229541201|ref|ZP_04430261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus coagulans
           36D1]
 gi|229325621|gb|EEN91296.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus coagulans
           36D1]
          Length = 451

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 90/281 (32%), Gaps = 23/281 (8%)

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VE SS  L    +   +      TN+   H+DYH T++AY  AK  +       +   
Sbjct: 165 MVVELSSFQL--MGVQTFRPHIAIITNIYEAHLDYHGTKEAYAKAKSNITRNQTEDDFLI 222

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           + +A       +         +++    +        V       +    ++  D     
Sbjct: 223 LNHAQPE----LWDLVSFTKAKIIPFSTKEYVEDGASVKDGSIMWKGEKIMDRADIVL-- 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG+  + N L A      +G  +  +   L     V  R +++G            A 
Sbjct: 277 --PGDHNLENILAAVAAAKLMGASNDAISGVLGTFKGVKHRTQYIGEIKGRKFYNDSKAT 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSE 423
              + +  L           +++   G DR  G   ++   AL      I   +  P+ E
Sbjct: 335 NILACKAALAAFHQ-----PVILLAGGLDRGNGFDELIP--ALKYVKALITFGETAPKLE 387

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              K       GIP      N  EA+  A  +    D +++
Sbjct: 388 STAK-----KAGIPVIRTVENVEEAVPVAWALSEPGDCILL 423


>gi|319939629|ref|ZP_08013988.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811218|gb|EFW07524.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
          Length = 450

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 137/427 (32%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLS--- 103
            DG  F         + +G + +       L D    +    P +  DN   +K L    
Sbjct: 38  NDGKPFEENPAAQSLLEEGIKVVTGGHPLELLDEDFELMVKNPGIRYDNPMVKKALEKEI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++    G S    G     +S  
Sbjct: 98  PVITEVELAYLISDAP---IIGITGSNGKTTTTTMIAEVLTAGGQSGLLSGNIGFPASQV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                               ++     + +E SS  L    ++         TNL   HI
Sbjct: 155 ------------------ATTATKNDTLVMELSSFQL--MGIETFHPEIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  AK  + + +   +   + +      +   K          +    G   
Sbjct: 195 DYHGSFENYVAAKWNIQKNMSKSDFLVLNFNQTLAKELAAKTQATVVPFSTTEKVDG--- 251

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 A      +T   E         +PG   V NAL    +    GI++ ++ E L 
Sbjct: 252 ------AYLEGNMLTFRGEPVMAADELGVPGSHNVENALATIAVAKLRGIENQVIKETLA 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R ++VG  +         +     +    K +    + ++I++   G DR   
Sbjct: 306 GFGGVKHRLQYVGEINHVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I   L  + I+       E   +++         +++  +  +A + A     
Sbjct: 362 FDELVPDI-QGLKKMVIL------GESAARVKRAADKAGVSYMDAADVKDATQKAFAEAQ 414

Query: 458 KQDVLVV 464
             D++++
Sbjct: 415 AGDIVLL 421


>gi|298372208|ref|ZP_06982198.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275112|gb|EFI16663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 468

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 122/376 (32%), Gaps = 54/376 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R         + +TG++GK++       I + +G +    G               
Sbjct: 105 EFAGRYTN---AKTICITGSNGKTTTTMLTYHILRNAGYNVGLAGNVGKS---------- 151

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQT 222
                        ++     +  +E SS  LD   +   +      TN+  DH   Y   
Sbjct: 152 ---------FAMQVAEDNFDYYILEISSFQLD--GMYSFRADIAIITNITPDHLDRYDYK 200

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y ++K R+ +     +       D   + E+ KR  +   R +      +  ++   
Sbjct: 201 FQNYVDSKFRILQNQTENDFFIFWAGDSTVANEIEKRGTSIKARKIPFDLTSQTDNVPNY 260

Query: 283 CAIH----NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +         +T  +  +      PL G   +YN++ A       G+    +   LE 
Sbjct: 261 AFVDGKDIIFNNLTNKLFLEMETNNLPLKGNHNLYNSMAAGLASQVAGVSKDAIRRSLET 320

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R E+V T      I    A   NS    L+++         VV   GG      
Sbjct: 321 FEGVEHRMEYVATVRGVRYINDSKATNVNSCWYALQSMT------TPVVLILGGTDKGND 374

Query: 399 RPIMGKIALDLADIAI-VTDDN---------PRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
              + ++  D     I +  DN          R+++ +KI          + E  +  E 
Sbjct: 375 YSDISELVSDRVHHLIFLGVDNDKLIKFFGCHRNKEGKKI---------PYSEARSMEEC 425

Query: 449 IRTAIEMLNKQDVLVV 464
           ++ A ++    D +++
Sbjct: 426 VQQAYKVAKNGDTVLL 441


>gi|311068041|ref|YP_003972964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
 gi|310868558|gb|ADP32033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
          Length = 451

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 122/366 (33%), Gaps = 52/366 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + + ++ +     +   G   T++S    +   
Sbjct: 105 ELAYYVTD---AKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGTVASEVAYHADG 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                +  E SS  L        +       N+   H+DYH ++
Sbjct: 162 ------------------DEWIVTELSSFQL--MGTHAFRPHISLILNVFDAHLDYHHSR 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK  ++   L  +  A++  DD     + +    A     +     +   +K   
Sbjct: 202 ENYEKAKQNVYLHQLESD-TAVVNQDDETVVRLAEAGKAASLAFSATKPLERGACVKD-- 258

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                  +    E         LPG   + N L A  +    G  +  + + L     V 
Sbjct: 259 -----GMILFDNEAILSLEDVVLPGAHNLENILAAVAVVKTAGASNEAIKKVLTSFTGVK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RP 400
            R ++V T           A    +    L         + +++   G DR  G    +P
Sbjct: 314 HRLQYVTTIQDRKFYNDSKATNVLATSKALSAFE-----KPVLLLAGGLDRGNGFDELKP 368

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M  +       AI+T     P+ E   K+ AE+  GI       N  +A+  A  + N+
Sbjct: 369 YMQNV------KAILTFGQTAPKLE---KLGAEL--GIQHVKRVDNVEQAVSAAFALSNE 417

Query: 459 QDVLVV 464
            DV+++
Sbjct: 418 GDVILL 423


>gi|313115620|ref|ZP_07801078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310622069|gb|EFQ05566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 467

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 108/361 (29%), Gaps = 39/361 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGA---------------- 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
             A               VE SS  L               TN+  +H+D+H+  Q Y +
Sbjct: 157 --ALLPMLPEVAPEDVAVVELSSFQLIS---MHSSPNIAVVTNVTPNHLDHHKDMQEYID 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A  R       +   A++  ++  S+ +             +        L+K   +   
Sbjct: 212 A-KRNILLYQKQPCRAVLGYENEISRSMQSDCKGKQVWFTRLHDTDNGAFLRKEDNMLCM 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  +         +            L+AA   +   +    + +       V  R E 
Sbjct: 271 AEDGVVTPFLAQKDVK--LRGLHNIENLLAAAAAVWGEVPVEAIQKVGSTFTGVEHRIEP 328

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T             +       L++       + +++   G D+     P+  ++   
Sbjct: 329 VRTLDGVLYYNDSIGTSPTRTIAGLRSF-----NQKVILIAGGYDKHIPYEPLAPEVVAH 383

Query: 409 LADIAIVTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + ++ ++    PR      EDP    AE+           N   A+  A       D+++
Sbjct: 384 VKNLVLMGATGPRIEKAVREDPNFNEAEL-----PIQHADNMQHAVELARACAKPGDIII 438

Query: 464 V 464
           +
Sbjct: 439 L 439


>gi|134095973|ref|YP_001101048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Herminiimonas
           arsenicoxydans]
 gi|133739876|emb|CAL62927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 80/426 (18%), Positives = 143/426 (33%), Gaps = 45/426 (10%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKH 113
           DG  F+  A++ G    ++          A      P+   ++   + L+    +    +
Sbjct: 66  DGIDFV--AVSPG----LMPERELAALIPAAEEKEIPLWGEIELFAQALAAL--KEERNY 117

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++A+TGT+GK++V S V  +CQR+GL+    G               +P+ +     
Sbjct: 118 TPKVIAITGTNGKTTVTSLVGLLCQRAGLTVQVAGNI-------------SPAALD-RLD 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S        +E SS  L  H    ++    +  NL +DH+D+H    AY + K R+
Sbjct: 164 QAVASDALPQVWVLELSSFQL--HFTYSLQADVATVLNLTQDHLDWHGDMAAYADDKARI 221

Query: 234 FEELL-----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           F           ++  +  A  + +                +  +     L    A    
Sbjct: 222 FGSNTIRVLNRDDARVMQMALPSAAVITFGADEAGQANCFGLADENGMRWLSVAVAEEEL 281

Query: 289 QQVTISVEGKDFDFLFPLPG---------EFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            Q     +  +                  +    NAL A  LC AIG+  A +L  L + 
Sbjct: 282 PQKRRKKDNVELAISTKKLMPVDALKIRGQHNAINALSALALCRAIGLSFAQLLHGLREY 341

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN-SLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           H  P R E V T +               ++  +     +   G   +V   GGD     
Sbjct: 342 HGEPHRVEHVMTIAGVEYYDDSKGTNVGATVAALNGLGVSQDGGAKHLVLIAGGDGKGQD 401

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              +       A   ++       +D   IRA I       I+     EA + A E+   
Sbjct: 402 FSPLADPVAKYARAVVLI-----GKDAASIRAAIAATGVELIDCTTLEEATQKAAELAQA 456

Query: 459 QDVLVV 464
            D +++
Sbjct: 457 GDAVLL 462


>gi|13471548|ref|NP_103114.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium loti
           MAFF303099]
 gi|23821883|sp|Q98KB4|MURC_RHILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|14022290|dbj|BAB48900.1| UDP-N-acetylmuramate-alanine ligase [Mesorhizobium loti MAFF303099]
          Length = 466

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 96/283 (33%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +      A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGSFDKVREA-FRQFVENVPFYGFGVMCTDHPEVQALVGRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNA 315
           +          Q          A    +   +  + K            P+PG   V NA
Sbjct: 232 DRRVITYGENAQADVRFTNHRMAGATSEFDVVIRDRKTGSQSTISGLRLPMPGRHNVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +G+    + + L     V  RF   G +  G  ++ DY H    +  +LK 
Sbjct: 292 TAAIAVAHELGLSGEAIKKGLSSFAGVKRRFTHTG-SWNGVDVFDDYGHHPVEISAVLKA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R+ T GR+I +      R      +  + +     AD  IV       EDP      ++
Sbjct: 351 ARSATKGRVIAI--AQPHRFTRLHDLFNEFSACFNDADTVIVAPVYAAGEDPIDGVSSDE 408

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
           + + I  G            AI   I  +    D +V  G G+
Sbjct: 409 LVSRIRAGGHRDARYIEGPTAIAPIIRGLAKPGDFVVFLGAGN 451


>gi|225021927|ref|ZP_03711119.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945314|gb|EEG26523.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 477

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 142/427 (33%), Gaps = 66/427 (15%)

Query: 70  AIVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD     A    N P++   +    L    +          + + GT GK
Sbjct: 72  VVVTSFAAIPQDNPELVAAREHNIPVIRRSDL---LGELMT------GSTQVLIAGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G+                         I      +  ++   +   
Sbjct: 123 TSTTSMAVVAMQAAGMDPS--------------------FAIGGQLNKAGTNAHQGSGHC 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
             A +   D   L          TN+  DH+D+  T +AYF      F   L      ++
Sbjct: 163 FVAEADESDASLLR-YSPDIAVVTNIEPDHLDFFHTPEAYFQV-FDDFAARLTDTGVLVV 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-------LKKVCAIHNKQQVTISVEGKD 299
             DD ++  + +R                  H       ++ V          + V  ++
Sbjct: 221 CLDDEHAAALGERQKTKVTVRGYGSAAAAERHPDIAYTVVESVAVADQISHAHMRVGERE 280

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG 355
            +    +PG   V NA  A    +  G D A + + + +   V  RFEF G     + RG
Sbjct: 281 VEVAMQIPGTHMVLNAAAALTAGVLAGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRG 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRT----ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
             +Y DYAH    +  +L   R       SG++IVVF      R Q       + AL LA
Sbjct: 341 VEVYDDYAHHPTEVRAVLTAAREKLAARGSGQVIVVFQPHMYSRTQEFAAEFAE-ALSLA 399

Query: 411 DIAIVTDDNPRSEDPEK------IRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDV 461
           D A+V D     E P        I   + + +   P F          +T  E+ +  D+
Sbjct: 400 DAAVVLDIYGAREQPHDGITSQLIIDRMTNKVVHQPNFSLVP------QTVAELAHPGDM 453

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 454 VITMGAG 460


>gi|319404509|emb|CBI78114.1| UDP-N-acetylmuramate--alanine ligase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 456

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 15/280 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P    A++  D    + +  R H
Sbjct: 154 LPADIAVVTNIDVEHLDHYGNFNAIREA-FRQFVENVPFYGFAVMCIDHPEVQTLASRIH 212

Query: 262 NAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          Q     L      +K C     +      + +  + + P+ G+  V NA
Sbjct: 213 DRWVITYGANPQADIRFLNLSMEGQKACFDILIRSRKTGEKTEINNLILPMSGKHNVSNA 272

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +GI    + + L +   V  RF   G N  G  I+ DY H    ++ +L  
Sbjct: 273 TAAIAIAHELGISPEAIKKGLAEFGGVKRRFTKTG-NWNGVEIFDDYGHHPVEIKAVLHA 331

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
            R    G II +                    + AD  ++T      E+P      +++ 
Sbjct: 332 ARESAKGNIIAIMQPHRYTRLYHLFDDFSTCFNDADTVMITPVYAAGEEPIAGFGSKELV 391

Query: 430 AEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I + G        +  + I     +    D +V  G G
Sbjct: 392 EHIQMAGHRDVHLINSLEDIISIVSRLAKSGDYVVFLGAG 431


>gi|115350518|ref|YP_772357.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
 gi|122324103|sp|Q0BIK0|MURC_BURCM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115280506|gb|ABI86023.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
          Length = 465

 Score = 61.1 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 134/430 (31%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH     A   GA A+VVS+A    +       +  + +V   R   L+       G   
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----A----IRTAIE-MLNK 458
           +  D  ++T+     E    I       +   +    R++    A    +  A+  +   
Sbjct: 381 STVDALVLTEVYAAGE--AAITTANGDALSRALRAVGRVDPVFVASVDDVPDALAGVARN 438

Query: 459 QDVLVVAGKG 468
            DV++  G G
Sbjct: 439 GDVVITMGAG 448


>gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 450

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 130/361 (36%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              + +  +  + I+A+TG++GK++V S V  +C++ GL +   G   T    A+  R  
Sbjct: 104 EIFAHIANRRGDKIIAITGSNGKTTVTSLVGHLCEKCGLDTVVAGNIGTPVLEAEMQRGG 163

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                           +      +E SS  L+    + ++  A +  N+  DH+D +   
Sbjct: 164 ----------------KKAGVWVLELSSFQLE--NTESLRPSAAAVLNISEDHLDRYDDL 205

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y + K ++F  +  +   A     D      MKRA               +       
Sbjct: 206 LDYAHTKDKIFRGVGVQVLNA-----DDALCRAMKRAGRGVKWFSLEKQADYW------- 253

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 ++    +        PL G     N + A  LC A+G+    +++H++    +P
Sbjct: 254 LERETGRLKAVSDDLMNTTDIPLQGLHNAANVMAAVALCEAVGLPREELVKHIQTFKGLP 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E +G  +    I         +    +  +++     +  + G  G + Q   P+  
Sbjct: 314 HRVEKIGEKNGVVFIDDSKGTNVGATAAAISGLQS----PLFAILGGLG-KGQDFTPL-A 367

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        ++        D  +IR ++       I+     EA++TA       D+++
Sbjct: 368 QVLRGKVKAVLLI-----GRDAPQIRRDLAGAGLNLIDCATLQEAVQTAYAQAQSGDIVL 422

Query: 464 V 464
           +
Sbjct: 423 L 423


>gi|300933353|ref|ZP_07148609.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium resistens
           DSM 45100]
          Length = 481

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 141/466 (30%), Gaps = 73/466 (15%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQG---AEAIVVSSAY---SLQDFSATI 86
           DSR I      +A+   G   + GH      +  G      +V S A       + SA  
Sbjct: 41  DSRSI------LALRTAGATVNIGHSAAN--LTAGGELPTVVVTSFAAIPQDNPELSAAR 92

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            +N P++   +        A  +  +       + GT GK+S  S      Q +G     
Sbjct: 93  DNNIPVVRRSDV------LAQLMVDR---RAFLLAGTHGKTSTTSMAVAALQAAGWD-PS 142

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 ++    +    T          S  S                            
Sbjct: 143 FAIGGQLNRAGTNAHHGTGDVFVAEADESDGSFLSYQ--------------------PEV 182

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII----------------YADD 250
              TN+  DH+DY  T++AY     R    ++   +  +                    D
Sbjct: 183 AVVTNVEPDHLDYFGTEEAYREVFERFAGCVVTGGTLVVCLDDAGSRALAQSLSRSIPAD 242

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                ++     A          G  I   ++     +  V    +         +PG  
Sbjct: 243 ERDYRILGYGTRAAVEDAPEVEAGAIIEDMRITPAGTEVSVRFFDDEAPRVLRVAIPGSH 302

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NA  A      +G D   +LE + +   V  RFE+ G +     +Y DYAH    + 
Sbjct: 303 MVLNATAAVLGGALLGADIDKLLEGIAEFDGVRRRFEYHG-SVNDVHVYDDYAHHPTEVT 361

Query: 371 MILKNIRT----ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +L   R        GR+I VF      R           AL LAD  ++ D     E+P
Sbjct: 362 AVLSAARERIEAQGKGRVIAVFQPHLYSRTMTFADEFA-AALSLADEVVLLDIFGARENP 420

Query: 426 EKIRAE--IIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            +      I   +    E      A+ RT  ++    D+++  G G
Sbjct: 421 VEGVDSRVIGDKVTVPWEYAPEFNAVPRTVSKLTRPGDMVLTIGAG 466


>gi|300726288|ref|ZP_07059741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
 gi|299776485|gb|EFI73042.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
          Length = 443

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 121/362 (33%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G  +   G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKTAGYDAGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 140 ---SLALQV-----AEEPHEYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDNK 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   +E   I + DD   ++ + +    G        + K +      
Sbjct: 190 FENYADAKMRILQNQTQEDSFIYWNDDPVIQKELNKFKITGRACPFSEIKEKNVIGYIED 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +  +  T     +D      L G+  +YN+L A       GI    + + L     V 
Sbjct: 250 GKYIIEHPTPFCMEQD---DMSLTGKHNIYNSLAAGIAADIAGIKKEDIHKGLSSFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   ++    L++++T       ++   G D+      I  
Sbjct: 307 HRLEKVCKVDGVQYINDSKATNVDACWYALESMKT-----PTILILGGKDKGNDYSQIYD 361

Query: 404 KIALDLADIAIVTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +      +  +  DN +  E+ ++       GIP   +     E ++   ++    D +
Sbjct: 362 LVKEKCRGLVYLGADNKKLHENFDQF------GIP-VKDTHGMKECVQACRDLAQPGDTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|215446387|ref|ZP_03433139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase murF
          [Mycobacterium tuberculosis T85]
 gi|289758278|ref|ZP_06517656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
          [Mycobacterium tuberculosis T85]
 gi|289713842|gb|EFD77854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
          [Mycobacterium tuberculosis T85]
          Length = 130

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 5  DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
          +L      E++      I P     R++   V  DSR I  G +F+A+ G + DGH  
Sbjct: 3  ELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHDH 60


>gi|256830370|ref|YP_003159098.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579546|gb|ACU90682.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
          Length = 458

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 130/418 (31%), Gaps = 54/418 (12%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
           QGA+ +V S+A      +         PI+     R   L+       G      +AV G
Sbjct: 63  QGAQVVVRSTAVSEDNPELEEARAHGVPII----PRAEMLAELMRLKVG------VAVAG 112

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S +  I   + L    I                      L    S       
Sbjct: 113 THGKTTTTSLLATIFMEAHLDPTVI--IGGR----------------LNAYGSNAMLGQG 154

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++  EA            +       TN+  DH+DY++      ++ +     +     
Sbjct: 155 RYLIAEADESD---GSFLCLLPRISIVTNVDADHLDYYKDLDEIRDSFVDFMNSVPFYGL 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +   DD   + ++ R                   +    A         S    +   
Sbjct: 212 NVV-CGDDKGVQSILSRVRRPVMTYGFGEENDLRAEIISCEAGSRFNVYRQSEFWGEVTL 270

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G   V NAL A G+ +  G+    ++  L     V  RFE       G  +  DY
Sbjct: 271 THP--GRHNVLNALAAIGVAMEAGVPKKDIIHGLGAFAGVGRRFE-HKGERNGVLVVDDY 327

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNP 420
            H    +   L+  R     + +VV      R    + + G  +   A  D  ++T+  P
Sbjct: 328 GHHPTEIAATLETARLCYPHKRLVV-AFQPHRFTRTQALFGDFSKVFAGVDQLLLTEIYP 386

Query: 421 RSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            SE P          + IR      +  F + G+   A+    E+L + D+ +  G G
Sbjct: 387 ASESPIPGVSGQSLAQAIRQVTSTPVRFFEDFGSMQAALG---EILQEGDLFLTLGAG 441


>gi|146299568|ref|YP_001194159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
           johnsoniae UW101]
 gi|146153986|gb|ABQ04840.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
           johnsoniae UW101]
          Length = 443

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 115/350 (32%), Gaps = 40/350 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++       + + +GL+    G                            +
Sbjct: 104 IGITGSNGKTTTTMLTHHLLKSAGLNVGLGGNIGKS-------------------FAWQV 144

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +        +E SS  LD   +   +      TN+  DH+D ++ +   +          
Sbjct: 145 AENKYDAYVLELSSFQLD--GIIDYRPDIAIITNISPDHLDRYEYKYENYINSKFRITMN 202

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +    I  ADD  S E +K       +  +              A  N  ++ I +  
Sbjct: 203 QTESDYLIYDADDEASTEWLK-----NNKTKAKLIPFSLTKTFDEGASINNNKMEIKINQ 257

Query: 298 KDFDFLFPLPG---EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++F           +  + NA+ A+ +   + I +A + E L     V  R E V     
Sbjct: 258 EEFTMETEHIALEGKHNMKNAMAASSVAKLMQIRNATIRESLSNFQGVEHRLEKVLKIQN 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A     +      + ++    + +V G   D+      +M  +   +  I  
Sbjct: 318 VQYINDSKATN---VNATFFALDSMNVPTVWIVGGV--DKGNDYNELMSLVREKVKAIIC 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DN       KI       +   +E  N  +A++TA  +  K D +++
Sbjct: 373 LGIDN------RKIIDAFGAVVDIMVEVNNMNDAVKTAQRLTEKGDAVLL 416


>gi|317132325|ref|YP_004091639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470304|gb|ADU26908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
          Length = 458

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 106/365 (29%), Gaps = 48/365 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +I +R G      G            R   P   
Sbjct: 106 FFEVCPCRIIAVTGSDGKTTTTTLISEILKREGRRVHLGGNIG---------RPLLPEIE 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +         +      VE SS  L   R           TN+  +H+D H+    Y  
Sbjct: 157 TI---------REDDVAVVELSSFQLISMRRS---PDVAVITNITPNHLDMHKDMVEYIQ 204

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F          + + D+A +  + +                   +      I   
Sbjct: 205 AKKHIFLHQNGCSKTVLNF-DNAITVPMAEEVRGQCLGFSLKEPPRFGCYTDADGVIWFL 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                       D L P     + Y A  AA   +A       +L        V  R E 
Sbjct: 264 SGEQKHYVMHRDDILLPGSHNVENYMAAAAAVWGLAK---PETILGVARSFTGVEHRIEL 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A T +     L+           V+   GG        ++G  A+ 
Sbjct: 321 VRELDGVRYYNDSIATTPSRTLAGLRAFSQ------KVILIAGGYDKHIPFDVLGPAAVQ 374

Query: 409 LADIAIV---TDDNPRSEDPEKIRAEI------IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                I+   T D        KI   +        G P  +      EA++TA       
Sbjct: 375 SVKCLILLGATAD--------KIATAVEGAEGYATGEPPILRVSGLEEAVQTARAQAASG 426

Query: 460 DVLVV 464
           DV+++
Sbjct: 427 DVVLL 431


>gi|300814100|ref|ZP_07094383.1| bifunctional protein FolC [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511757|gb|EFK38974.1| bifunctional protein FolC [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 422

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 8/218 (3%)

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               EV K          S  Y+  F  +  +    N  + +          L      +
Sbjct: 195 PQKDEVYKELKEIADGNNSEIYKFDFSEINIINEDINGNEFSFREYKNVRTSLIGRHQAY 254

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
               AL          +     +         P R E     S    I +D +H   S+ 
Sbjct: 255 NASLALSILSYLKNFFVLDDEKIRQGIYKTTNPARLEI---ISDKPLILMDGSHNEESIN 311

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIR 429
            ++ N+      ++I+ F    D++   R  + K     AD  ++T+ D+ R  D   + 
Sbjct: 312 SLISNLDKFNYEKLILGFSILRDKE---REKIIKKLAKYADTVVLTEIDSDRKSDINDLC 368

Query: 430 AEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAG 466
                     I    +  +A+   +E+ +K+D+++  G
Sbjct: 369 NIFKSYTDKKIYMETDIEKAVNKTLELSSKKDLILWCG 406


>gi|49479386|ref|YP_037974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118479132|ref|YP_896283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196035806|ref|ZP_03103208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196038844|ref|ZP_03106152.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225865894|ref|YP_002751272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228935228|ref|ZP_04098054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947632|ref|ZP_04109922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123426|ref|ZP_04252630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|301055403|ref|YP_003793614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           anthracis CI]
 gi|60390446|sp|Q6HEQ2|MURD_BACHK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158512491|sp|A0RHT3|MURD_BACAH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766037|sp|C1EPS6|MURD_BACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49330942|gb|AAT61588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418357|gb|ABK86776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|195991455|gb|EDX55421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196030567|gb|EDX69166.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225789057|gb|ACO29274.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228660202|gb|EEL15838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|228812152|gb|EEM58483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824393|gb|EEM70199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|300377572|gb|ADK06476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 450

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKAEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|312867256|ref|ZP_07727466.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
 gi|311097385|gb|EFQ55619.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
          Length = 449

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 136/389 (34%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMVEKALEKGIPVL----TEVELAYLIS------DAPIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQGGLLSGNIGFPASQV------------------AQTATEKDVLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   HIDYH + + Y  AK  L + +  K+   + +  D     
Sbjct: 174 -MGIEAFHPEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEKDVIVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K         +      + +    +     K +  + +   +      +PG   V NA
Sbjct: 228 LAKELATKTKARVLPFSTVEKVDGAYLEDGLLKFKGEVVMRADEL----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+++ ++ E L     V  R ++V             +     +    K 
Sbjct: 284 LATIAVAKVRGVENEVIKETLSAFGGVKHRLQYVDEIQGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L ++ I+ +  PR +           G
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPHITG-LKEMVILGESAPRVKRVAD-----KAG 393

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +P +++  +  +A + A  + +  DV+++
Sbjct: 394 VP-YVDAADVADATKKAFYLASPGDVVLL 421


>gi|291533194|emb|CBL06307.1| UDP-N-acetylmuramate--L-alanine ligase [Megamonas hypermegale
           ART12/1]
          Length = 393

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 10/246 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+  DH+D++ + +    A ++  + L  +   A++  D+   + +  +   
Sbjct: 155 YPKIAVITNIEDDHMDHYGSMENIIKAFIQFVQNLDKETGLAVLCFDNENIRNIADKVDR 214

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
                            K +         T+  +G+   D    +PG+  V NAL    +
Sbjct: 215 KYISYALDHDADYM--AKDIKIDGPHTSFTVIYKGEVLGDVALNIPGKHNVLNALATIAV 272

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C  +G+    + E  +       RF+     +    I  DYAH    ++  +K  +    
Sbjct: 273 CHHMGLSIEEIAEGFKVFSGTKRRFQ-TKFRNENVWIVDDYAHHPTEIQTTIKAAKQTNP 331

Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            R+IV F      R Q  +   G      AD+ ++TD    SEDP     E I G     
Sbjct: 332 KRLIVAFQPHRYSRTQLLQKEFGS-CFVGADVLVLTDIYAASEDPI----EGISGKTIVD 386

Query: 441 EKGNRI 446
           E  NR 
Sbjct: 387 EVKNRQ 392


>gi|254368603|ref|ZP_04984619.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157121506|gb|EDO65697.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 451

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  +             F      +S  +   D      + K   
Sbjct: 169 LSPQVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAKYNQ 228

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +              + +     I       I  +G D  F   LPG + V NA      
Sbjct: 229 SDKNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQNATACIIT 288

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIRT- 378
           C+ +G     +   L K+  V  RF+       G ++ V  DY H    +   +  +R  
Sbjct: 289 CLDLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDR 348

Query: 379 ITSGRIIVVF---GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
             + +II VF       +RD  K       AL LAD  I+       E   K     +I+
Sbjct: 349 YPNKKIIHVFQPHRYTRNRDLIKDWP---KALSLADQLILLPTYSADEQIIKGAESQDIV 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G+ G++        I    ++ N+  V+++ G G
Sbjct: 406 KGLSGYLLADGFDHVIYFLEKLANENTVILIQGAG 440


>gi|50842246|ref|YP_055473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
 gi|59798222|sp|Q6A9Q1|MURC_PROAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50839848|gb|AAT82515.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
          Length = 471

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 97/272 (35%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVYGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L   L   R +    GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRVVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   +I   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|213155698|ref|YP_002317743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|215484924|ref|YP_002327163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|301346529|ref|ZP_07227270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB056]
 gi|301512504|ref|ZP_07237741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB058]
 gi|301594847|ref|ZP_07239855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB059]
 gi|332851488|ref|ZP_08433485.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332866813|ref|ZP_08437217.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
 gi|226711875|sp|B7H1N2|MURD_ACIB3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711876|sp|B7I325|MURD_ACIB5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213054858|gb|ACJ39760.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|213988566|gb|ACJ58865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|332729941|gb|EGJ61272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332734421|gb|EGJ65541.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
          Length = 448

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 126/408 (30%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 82  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 110 ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 155 -----LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+         +    +    
Sbjct: 204 GAKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKSS 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             ++    G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 264 DLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVHDVRYYN 320

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 321 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFGPLRSSI-EKYAKVVVLI 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+         +DV+++
Sbjct: 379 -----GEDAPVIEQAI-QGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|169797488|ref|YP_001715281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AYE]
 gi|169150415|emb|CAM88312.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii AYE]
          Length = 455

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 126/408 (30%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 89  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 117 ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 161

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 162 -----LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+         +    +    
Sbjct: 211 GAKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKSS 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             ++    G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 271 DLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVHDVRYYN 327

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 328 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFGPLRSSI-EKYAKVVVLI 385

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+         +DV+++
Sbjct: 386 -----GEDAPVIEQAI-QGATKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|239947811|ref|ZP_04699564.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922087|gb|EER22111.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 479

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 145/442 (32%), Gaps = 71/442 (16%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      IV+SSA +    +    +    PI+        L           
Sbjct: 64  GH--AEQNITN-VSYIVISSAINPNNPEIKEALERKIPIIRRAEMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S V  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLVACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY++  +    A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYKDFETLIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGATIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMG 403
             V        I  DYAH    ++  L   + I    +G++I +F         +   M 
Sbjct: 330 TKVA-EYNKASIIDDYAHHPEEIKATLATAKNIANKQNGKVIAIF------QPHRYSRMQ 382

Query: 404 KIALDL------ADIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIE 447
            +  D       ADI  +TD     E+P          +KI     H    F+ + +  +
Sbjct: 383 HLFDDFMLCFVDADILYITDIYAVGENPIEGITGQSLVDKITKNKHHDKANFLAQLD--D 440

Query: 448 AIRTAIEMLNKQDVLVVAGKGH 469
           A+   I+     D++++ G G+
Sbjct: 441 AVGVIIDNAASGDMIIMMGAGN 462


>gi|255524030|ref|ZP_05390992.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296186887|ref|ZP_06855288.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
 gi|255512317|gb|EET88595.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296048601|gb|EFG88034.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
          Length = 458

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 90/273 (32%), Gaps = 11/273 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+D+++      NA    F +L+PK    I Y +D    +V+   + 
Sbjct: 179 FPYIGVILNIDADHLDFYKDIDDIQNA-FIKFAKLIPKNGYLICYGEDPRMGKVISECNC 237

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +          K            +           +PG+  + NAL +  + 
Sbjct: 238 -NVLTYGLTNGNVVAKNMKFDEKGCASFDVYAANEMITSVKLNVPGKHNILNALASICVS 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +++ I + L+ + LE       RFE  G  + G  +  DYAH    ++  L   +     
Sbjct: 297 LSLDIPTNLISKGLESFKGTHRRFEIKGVKN-GITVVDDYAHHPTEIKATLSAAKNYPHN 355

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHG 435
           +I  VF      R         +   D AD  I+ D     E          +  +I   
Sbjct: 356 KIFCVFQPHTYSRTLNLFKEFTEAFGD-ADELILADIYAAREKDTGVVSSSMLANKIKET 414

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   +  E +    +     DV++  G G
Sbjct: 415 KSACFNFHSFEEIVSYLNKNAKNGDVILTVGAG 447


>gi|42783006|ref|NP_980253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 10987]
 gi|60390050|sp|Q732F6|MURD_BACC1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|42738933|gb|AAS42861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10987]
          Length = 450

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNXTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|294792040|ref|ZP_06757188.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
 gi|294457270|gb|EFG25632.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
          Length = 460

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 125/430 (29%), Gaps = 49/430 (11%)

Query: 51  GNKED-GHL--FIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++      G +AIV S+A      +  A       IL   +  K +   
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     + +AV G  GK+S  S + QI   +                     +   
Sbjct: 105 ---------TDGIAVAGAHGKTSTTSMIGQILVEANADPTV---------------IIGG 140

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              YL  +            + E+    L  H            TN+  DH+D+++T   
Sbjct: 141 EVDYLKGSSCLGKGHFSVVEADESDGSFLKLH------PHTIVITNIEDDHMDHYKTMDN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP+   AI+  D+   + VM R                          
Sbjct: 195 LLNA-FCEFVETLPEAGKAIVCGDNENIRYVMSRVKRTFITYGLEDNNDYVAK-NIHYVD 252

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +                  +PGE  V N+L A  +           +       +   R
Sbjct: 253 SSLVYDVYHKGINISRISLRVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGAKR 312

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                 +  G  +  DYAH    ++  L+  + +   R+I VF                 
Sbjct: 313 RFETKGHVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDEFAT 372

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNK 458
           A   AD   +TD     EDP        I   +       +    +  +      +++  
Sbjct: 373 AFTSADEIYMTDIYSSGEDPIAGIDGRTIPDAVEAATNKVVHYVPSVDDIPAVLAKIVRP 432

Query: 459 QDVLVVAGKG 468
            D+++  G G
Sbjct: 433 NDLVITMGAG 442


>gi|146281466|ref|YP_001171619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri A1501]
 gi|145569671|gb|ABP78777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           stutzeri A1501]
          Length = 447

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 121/375 (32%), Gaps = 50/375 (13%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R          L  +    I+A+TG++ KS+V + V ++   +G +    G  
Sbjct: 84  ALQEAAARGVKLSGDIELLAREAKAPIVAITGSNAKSTVTTLVGEMAAAAGRTVAVGGNL 143

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +                        +  V    +E SS  L+    + +     +  
Sbjct: 144 GTPALDL--------------------LADDVDLYVLELSSFQLET--TEQLNAEVATCL 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++  DD  S+ ++          L  
Sbjct: 182 NISEDHMDRYSGLPAYHQAKHRIFRGARQ----VVVNRDDRLSRPLVGEDVPTWTFGLGK 237

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                F   ++    +   Q    +  ++            +    +   + +  G    
Sbjct: 238 PDFKGFGLFEEKGEKYLAFQFEALMPVRELKMRGAHNQSNALAALALGHAVGLPFGPMLD 297

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                L +   +P R ++VG  +         A    +    ++ +     G+++++ G 
Sbjct: 298 T----LRRFTGLPHRCQWVGERAGVSYYDDSKATNVGAALAAIEGLGADIDGKLVLIAGG 353

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G +      +   +A       ++   D PR         E +      I   +  EA+
Sbjct: 354 DG-KGADFSALRAPVA-RYCRAVVLLGRDAPR-------LDEALGEAAVLIRVASLEEAV 404

Query: 450 RTAIEMLNKQDVLVV 464
           + A E     D +++
Sbjct: 405 QRAAECAEPGDAVLL 419


>gi|104783455|ref|YP_609953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           entomophila L48]
 gi|95112442|emb|CAK17169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           entomophila L48]
          Length = 448

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 122/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 85  ALQQAAARGVTLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAQAGKRVAVGGNL 144

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T +    D        + L                +E SS  L+    D +     +  
Sbjct: 145 GTPALDLLD------DSVEL--------------YVLELSSFQLET--TDQLNAEVATVL 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +       G    S 
Sbjct: 183 NISEDHMDRYSGLPAYHLAKHRIFRGARQ----VVVNRQDALSRPL----PVEGRPSWSF 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 235 GLNAPDFKAFGLREVDGEKHLAFEFQTLMPVRELKIRGAHNQSNALAALALGHAAGLPFE 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V   +         A    +    ++ +     G+  +V   
Sbjct: 295 PMLEALREFKGLAHRCQWVRERNGVNWYDDSKATNVGAALAAIEGLGADIEGK--LVLIA 352

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGD        + +         ++        D E++   +   +P         EA++
Sbjct: 353 GGDGKGADFAALREPVAQHCRAVVL-----LGRDAERLAETLGDTVPQV-RVKTLDEAVQ 406

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 407 RCAELAQPGDAVLL 420


>gi|25028608|ref|NP_738662.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259507666|ref|ZP_05750566.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|29336721|sp|Q8FNU1|MURC_COREF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|23493894|dbj|BAC18862.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259164713|gb|EEW49267.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 489

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 141/431 (32%), Gaps = 72/431 (16%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +R+   N P++   +    L               + + GT GK
Sbjct: 84  VVVTSFAAIPQDNPELVRAREENIPVIRRSDLLGELLE---------GHRQVLIAGTHGK 134

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G+          ++    +    T          S  S    T   
Sbjct: 135 TSTTSMAVVALQAAGMD-PSFAIGGQLNKAGTNAHQGTGEAFVAEADESDASLLRYT--- 190

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+D+ +T +AYF      F + L      ++
Sbjct: 191 -----------------PEIAVVTNIEPDHLDFFKTPEAYFQV-FEDFADRLTPGGTLVV 232

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---------CAIHNKQQVTISVEG 297
             DD  +  + +RA   G   +  G          V           +       + ++G
Sbjct: 233 CLDDPGAAALGERAVARGINAVGYGTVDAVAAHPTVPVKATILSSRVVAEGTYAVLDIDG 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           ++ + +  +PG   V N   A      +G D   +   L     V  RFE+ GT   G  
Sbjct: 293 REVEIILQIPGNHMVLNGAAALLSGYLLGADLDKLAAGLSDFSGVRRRFEYHGTVRGGQF 352

Query: 358 I----YVDYAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQGKRPIMGKI---A 406
                Y DYAH    +E +LK  R        GR+IV F         +     +    A
Sbjct: 353 DGASVYDDYAHHPTEVEAVLKAARERVDAAGEGRVIVAFQPHL---YSRTLEFAREFAGA 409

Query: 407 LDLADIAIVTDDNPRSEDPEK------IRAEI---IHGIPGFIEKGNRIEAIRTAIEMLN 457
           L LAD A++ +     E P +      I  E+   +   P F    +RI       E+  
Sbjct: 410 LSLADAAVLLEIFGAREKPVEGVTSRVITDEMTIPVSYEPNFSAVPDRIA------EIAG 463

Query: 458 KQDVLVVAGKG 468
             D+++  G G
Sbjct: 464 PADIVLTMGAG 474


>gi|302339378|ref|YP_003804584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636563|gb|ADK81990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 459

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 146/434 (33%), Gaps = 61/434 (14%)

Query: 59  FIPQAIAQGAEAIVVS-SAYSLQDFSATIRSNTPI----------------LVVDNT--- 98
           FI +    GAE  V       +   S    ++ P+                +VV N    
Sbjct: 30  FIEE----GAEVTVTDLRDEKILGPSIRKLASFPVRFVLGRHEMSDFSKADIVVKNPAVP 85

Query: 99  -----RKFLSLF---ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
                 K  +      S     +   I+AVTG+ GKS+V S +    Q     +   G  
Sbjct: 86  ASSPYLKAAARVESDISIFLRHNNRPIIAVTGSKGKSTVVSAMFHAIQLRYPEARLGGNI 145

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI-KLIAGSF 209
                        T SP+     +    ++    V +E SS  L   R   + K      
Sbjct: 146 -------------TVSPLT---FIDECRAESAAPVILELSSWQLADLRGKRLLKPAVSLI 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH + + + +AY  A  ++      KE+  +I  DD +S E              
Sbjct: 190 TNIMHDHQNSYDSMEAYV-ADKKIIYADQTKEAYTVINGDDPWSAEFASETPAKSIPFFR 248

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                + I    +    +      S E +       + GE    N L AA +    G   
Sbjct: 249 DEGSARGISAW-LAEDGSGWYRDASGEEEILPAHIAICGEHNRLNLLSAALVLKLFGTAG 307

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           + V + L     +P R E +    +  R Y D A T    E     +++ ++   +++  
Sbjct: 308 SDVKQRLADFRGIPHRLELLTEKRQ-VRWYNDSASTIP--EATAVAVKSFSA--PLILIT 362

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G D++    P+    A+      I+  +   S+    I       +P      +  EA+
Sbjct: 363 GGTDKNIDFSPLESYAAVP--KKMIL-LEGSASDKMADILE--SRNLPFSGPFASLKEAV 417

Query: 450 RTAIEMLNKQDVLV 463
           + A +  +  D+++
Sbjct: 418 QCAEKEASPGDIVL 431


>gi|126700872|ref|YP_001089769.1| putative folylpolyglutamate synthase [Clostridium difficile 630]
 gi|255308301|ref|ZP_05352472.1| putative folylpolyglutamate synthase [Clostridium difficile ATCC
           43255]
 gi|115252309|emb|CAJ70150.1| Folylpolyglutamate synthase [Clostridium difficile]
          Length = 432

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388
              +         PGR E +          +D AH  +  + + K + +     ++ ++ 
Sbjct: 285 EESIRKGLINTKWPGRIEKIKE---NPIFIIDGAHNEDGAKSLAKALDKNFKGRKLTLLI 341

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           G   D+D      + +I L   +  I T   NPR+ + + +R +++  +     K    +
Sbjct: 342 GMLEDKDID---SVLEILLPHFNKVITTTPSNPRAINSDILREKVLKYVDDVTSKHEIED 398

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A+   +E  ++ D+++ AG
Sbjct: 399 AVNYTLETSSEDDIIISAG 417


>gi|327479641|gb|AEA82951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri DSM 4166]
          Length = 447

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 123/375 (32%), Gaps = 50/375 (13%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R             +    I+A+TG++ KS+V + V ++   +G +    G  
Sbjct: 84  ALQEAAARGVKLSGDIELFAREAKAPIVAITGSNAKSTVTTLVGEMAAAAGRTVAVGGNL 143

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                        TP+   LA  +            +E SS  L+    + +     +  
Sbjct: 144 G------------TPALDLLADEVDLYV--------LELSSFQLET--TEQLNAEVATCL 181

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++  DD  S+ ++          L  
Sbjct: 182 NISEDHMDRYSGLPAYHQAKHRIFRGARQ----VVVNRDDRLSRPLVGEDVPTWTFGLGK 237

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                F   ++    +   Q    +  ++            +    +   + +  G    
Sbjct: 238 PDFKGFGLFEEKGEKYLAFQFEALMPVRELKMRGAHNQSNALAALALGHAVGLPFGPMLD 297

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                L +   +P R ++VG  +         A    +    ++ +     G+++++ G 
Sbjct: 298 T----LRRFTGLPHRCQWVGERAGVSYYDDSKATNVGAALAAIEGLGADIDGKLVLIAGG 353

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            G +      +   +A       ++   D PR        AE +      I   +  EA+
Sbjct: 354 DG-KGADFSALRAPVA-RYCRAVVLLGRDAPR-------LAEALGEATVLIRVASLEEAV 404

Query: 450 RTAIEMLNKQDVLVV 464
           + A E     D +++
Sbjct: 405 QRAAECAESGDAVLL 419


>gi|302342253|ref|YP_003806782.1| FolC bifunctional protein [Desulfarculus baarsii DSM 2075]
 gi|301638866|gb|ADK84188.1| FolC bifunctional protein [Desulfarculus baarsii DSM 2075]
          Length = 432

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGKR 399
            PGR E   T+     +++D AH   S + +L +I  +    G +++V G   D+   K 
Sbjct: 287 WPGRLERWPTDEGEPALWLDGAHNIPSAKALLASIDLLRRPGGPLVMVVGVMADKAVDK- 345

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             +  I L  AD  + +     R+  P+ + A      P      +   AI+ A E+   
Sbjct: 346 --ILAIVLPAADRVVFSRPGYSRAATPQALAAAAPKDCPPSEINDDLASAIQRARELAGP 403

Query: 459 QDVLVVAG 466
           + V+++ G
Sbjct: 404 EGVVLITG 411


>gi|269956085|ref|YP_003325874.1| UDP-N-acetylmuramate/alanine ligase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304766|gb|ACZ30316.1| UDP-N-acetylmuramate/alanine ligase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 493

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIM 402
            RFE  G  + G R+  DYAH    +E +L+  R +     ++V        + +     
Sbjct: 343 RRFEPRG-EAGGVRVVDDYAHHPTEIEALLRAARPVAGTGRVLVLFQPHLYSRTRIFADR 401

Query: 403 GKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIP------GFIEKGNRIEAIRTAIE 454
              AL LAD  +VT      ED  P      I   +P      G     +R EA R   E
Sbjct: 402 FAAALALADEVVVTGVYRAREDVDPAVGARTITDLLPTTASGGGVHAVEDRQEAARRIAE 461

Query: 455 MLNKQDVLVVAGKG 468
           +    D+++  G G
Sbjct: 462 LARPGDLVLTVGAG 475


>gi|326388919|ref|ZP_08210501.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206519|gb|EGD57354.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 474

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 133/408 (32%), Gaps = 50/408 (12%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
              +  A + +  P++        L            +N +AV GT GK++  S V  + 
Sbjct: 80  DNPEVVAALEARIPVVRRAEMLAELMRL---------KNTVAVAGTHGKTTTTSMVACLL 130

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
              G+    I     I+S+  + RL                      + VEA        
Sbjct: 131 DAGGIDPTVI-NGGIINSYGSNARLGDSD-----------------WMVVEADESDGSFL 172

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RLDG        TN+  +H+D++ +      A    F E +P    A++  D    + ++
Sbjct: 173 RLDGTI---AVVTNIDPEHLDHYGSFDRVK-AAFVEFIENVPFYGAAMLCIDHPVVQAII 228

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDFLFPLPGEFQV 312
               +          Q        +      +   +  +      +  D + P+PG   V
Sbjct: 229 PMVRDRRVITYGFSAQSDVRGEAVIPVPGGNRFTAVLRQRDGTFHRIEDIVLPMPGRHNV 288

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSL 369
            NAL A  +   +G+   ++ +   K   V  RF  VG          +  DY H    +
Sbjct: 289 QNALAAIAVAREMGVADDVIRDGFAKFGGVKRRFTKVGEIEVDGGLVTVIDDYGHHPVEI 348

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPEK 427
             +L   R    GR+I V      R    R  M +   A   AD+  VT      E P +
Sbjct: 349 RAVLAAAREGARGRVIAVV--QPHRFTRLRDHMEEFQSAFHDADVVFVTPVYAAGEAPIE 406

Query: 428 IRAE--IIHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 ++ GI               E  R    M+   D++V  G G
Sbjct: 407 GVDAAVMVEGIKARGHRSAHSIAGVGELARELAPMVRADDMIVCLGAG 454


>gi|221632549|ref|YP_002521770.1| folylpolyglutamate synthase [Thermomicrobium roseum DSM 5159]
 gi|221157143|gb|ACM06270.1| folylpolyglutamate synthase [Thermomicrobium roseum DSM 5159]
          Length = 484

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 14/131 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400
            PGRFE +        + +D AH    +  +L+ +  +   GR + +FG     D     
Sbjct: 315 FPGRFEIIQETPL---VILDGAHNPQKMAALLEALDALSVQGRRLALFGVLEGHDAL--- 368

Query: 401 IMGKIALDLADIAIVTDDNPRS-----EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
            M  +     D+ ++T   PR+      DP ++ A         +   +  EA+   +EM
Sbjct: 369 TMATMLAKSVDMVVLTT--PRAFLRTAADPVELAAACQAQGTHAVTVDDPAEALALVLEM 426

Query: 456 LNKQDVLVVAG 466
               D++VV G
Sbjct: 427 AQPNDLIVVTG 437


>gi|218131850|ref|ZP_03460654.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
 gi|217986153|gb|EEC52492.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
          Length = 444

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD   +  +++    G +     +           
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKH---GLKAHPYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI    + + L     V 
Sbjct: 247 VEDGEVEINEPIAFNMEQEELALHGTHNLYNSLAAGISANLAGIKKEDIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVATVRGIQFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIEE 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +       G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVRTKCSALVYLGLHN---EKLHEFFD--RFGLPVADVQTGMKDAVEAAFQLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|209550173|ref|YP_002282090.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535929|gb|ACI55864.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 471

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 88/281 (31%), Gaps = 17/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNAL 316
                              ++    +   V I                P+PG   + NA 
Sbjct: 233 RKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVIELKGLVMPMPGRHNISNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI SA + + L     V  RF   G    G +I+ DY H    ++ +L+  
Sbjct: 293 AAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK------I 428
           R    GRII V      R      +  + A     AD   +       EDP        +
Sbjct: 352 REACKGRIIAV--HQPHRHSRLASLFEEFAACFNDADSIFLAPVYAAGEDPIAGIDSVSL 409

Query: 429 RAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            + I  G        N  E + +   E+    D +V+ G G
Sbjct: 410 VSRIKSGGHRDARFLNSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|329118775|ref|ZP_08247473.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465122|gb|EGF11409.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 484

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 82/424 (19%), Positives = 142/424 (33%), Gaps = 57/424 (13%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGT 123
           GA+ +V S+A    +    A +    P++     R   L+       G      +A+ GT
Sbjct: 79  GADVVVTSTAVKKDNPEVAAALAQQIPVI----PRALMLAELMRFKDG------IAIAGT 128

Query: 124 SGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S    +   +G   +F IG    +++   + RL     I      S  S    
Sbjct: 129 HGKTTTTSLTASVLAAAGLDPTFVIG--GKLTASGTNARLGKGEYIVAEADESDASFLH- 185

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +  I    TN+  DH+D +       +     F   +P   
Sbjct: 186 -------------------LTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYG 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---- 298
            A + AD  + + ++ +                    + + +   + +  + V  K    
Sbjct: 227 KAFLCADSEHVRAILPKVSKPYTTYGFGEDADI--RAENIESDGAQMKFAVRVRMKGHEP 284

Query: 299 -DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            DF     LPG   V NAL A G+ +  G D+A + + L+    V  RF+  G       
Sbjct: 285 LDFPVTLNLPGRHNVLNALAAIGVALECGADTAAIQQGLQNFGGVGRRFQSYGEIPLKTG 344

Query: 358 ----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
               +  DY H    +   L   R     R  +V      R    R +    A  L   D
Sbjct: 345 GSALVIDDYGHHPTEMAATLAAARGAYPHRR-LVLAFQPHRYTRTRDLFDDFAKVLNTVD 403

Query: 412 IAIVTD-----DNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVV 464
             ++TD     ++P  ED   +   +   G    +   +  E     ++  L+  DVL+ 
Sbjct: 404 TLVLTDVYAAGEDPLPEDSRALARNVRAYGKVEPLYCADVNEMPAMLLDTVLHDGDVLLN 463

Query: 465 AGKG 468
            G G
Sbjct: 464 MGAG 467


>gi|299143292|ref|ZP_07036372.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517777|gb|EFI41516.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 511

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 115/361 (31%), Gaps = 18/361 (4%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                 +   +L +TG+ GK+SV      I                +      +   TP 
Sbjct: 153 RNYKENYDLKVLGITGSFGKTSVKFISNTILSE------------GLRVKNTPSSFNTPM 200

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +         ++  V    + A   G  +     ++   G  T +G  H+   +T    
Sbjct: 201 GLSKIINNELENTTEVFIAELGAKKRGEIEEVAALVQPNIGIITAIGPTHMHLFKTIDNI 260

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            N       E+LP+   AI   D+ Y K +  +      R      +   ++   +    
Sbjct: 261 QNT-KYELIEMLPENGVAIFNYDNDYVKPLADKTEIKTIRYGIKDVEKLDVYATDISVDE 319

Query: 287 NKQQVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
              +  + +    + +    L G   + N L AA     +G+    +   ++K+  V  R
Sbjct: 320 MGSKFILHIRELGEIECESKLLGVHNISNLLAAASSAYILGLSLEQIANGMKKVEPVEHR 379

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIM 402
              V +NS    I   +          L  I     GR I++       GD ++ +   +
Sbjct: 380 LNIVNSNSGVIVIDDAFNSNPIGFRAALDVISEFKDGRKIIITPGMVELGDMEEEENYKI 439

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           G       D  I+     R+    +   +  + +       +  EA +    +   +DV+
Sbjct: 440 GFEIAKTCDFVILVGKK-RTAPIYRGLEDAKYNLENVFRVNSLNEATQVLGHLSAPKDVV 498

Query: 463 V 463
           +
Sbjct: 499 L 499


>gi|296133661|ref|YP_003640908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermincola sp. JR]
 gi|296032239|gb|ADG83007.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermincola potens
           JR]
          Length = 454

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 94/299 (31%), Gaps = 20/299 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
           I L              +  E SS  L+  HR    K       N   DH+D H T + Y
Sbjct: 145 IGLPLVAEVEKYAREDIIVAEVSSFQLECIHR---FKPKVSIILNFTPDHLDRHGTFENY 201

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK R+FE   P++   + + D   +    +              +      +    I 
Sbjct: 202 ILAKARIFENQGPEDFAVLNFDDPKVAACAEQVKAQVIFFSRRHKLEKGVYVRQDRIIID 261

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             Q        KD            + NAL A      +G++  ++ E L     VP R 
Sbjct: 262 LGQGSKDVCSVKDIFIRGNH----NLENALAATAAAATLGVEPEVIAEVLRTFRGVPHRM 317

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E V        I        ++    L +         +V+   G ++         K+ 
Sbjct: 318 EHVAEIDGVAYINDSKGTNPDAAMKALDSYDQ-----PLVLIAGGRNKGSDFTAFAAKVR 372

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  + ++       E  ++I   +   G           EA+R A E+ N  +++++
Sbjct: 373 EKVRALVVL------GECADEIIESMNKVGFSNIYRAHTLEEAVRKAAEVANPGEIVLL 425


>gi|229186153|ref|ZP_04313322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
 gi|228597329|gb|EEK54980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
          Length = 450

 Score = 60.7 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEDD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKAEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|290473427|ref|YP_003466293.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus bovienii SS-2004]
 gi|289172726|emb|CBJ79497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus bovienii SS-2004]
          Length = 456

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 104/372 (27%), Gaps = 41/372 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G      G          D         +   
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYK---PGFLIGGVPGNFDVSAQIGESPFFVI 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                        S                        NL  DH D  +       A ++
Sbjct: 158 EADEYDCAFFDKRSKFV-----------HYGPRTLIMNNLEFDHADIFENL-----AAVQ 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K     GC               K  +  +     
Sbjct: 202 KQFHHLVRVVPGSGKILVPDNDINLKHVIGMGCWSELEHVGETGNWQTKKVSQDSSIYQV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                +  +  + L GE  ++N L+A      +G+  A   + L        R E  G  
Sbjct: 262 FHQSEQVGEVNWSLVGEHNMHNGLIAIAAAHHVGVQPADACQVLGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDL- 409
             G  +Y D+AH   ++ + L  +R+   G    +      R    +  M K  IA  L 
Sbjct: 321 VNGISVYDDFAHHPTAILVTLAALRSKVGGVAR-ILAVLEPRSNTMKMGMSKNDIAPSLG 379

Query: 410 -ADIAIVTDDNPRSEDPEKI---RAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +         P  I    AEI    I       +    +R  +E     D +++
Sbjct: 380 RADEVFLYQ-------PANIPWQVAEIAEHCIQPARWSADIDALVRMIVEAAQPGDYILI 432

Query: 465 AGKG-----HET 471
              G     HE 
Sbjct: 433 MSNGGFDGIHEK 444


>gi|289549042|ref|YP_003474030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
 gi|289182659|gb|ADC89903.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
          Length = 422

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 122/355 (34%), Gaps = 48/355 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +       +A+TGT GKS+       I +       + G                P    
Sbjct: 79  WRFFEGTAIAITGTDGKSTTTRLSYLILRSYFSHVEEGGNIGV------------PFSYL 126

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           + K    L+        +E SS       L   +   G+F N   DH+D+H   + Y  +
Sbjct: 127 VMKNPKALA-------VLEVSSFQGKT--LKTFRPHVGAFLNFSEDHLDWHPDLRDYLWS 177

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K  +F    P++   +           + R   +  R +  G   +    +       ++
Sbjct: 178 KYNIFSRQTPEDWILLNGTQK------VTRDTPSPARKVFFGDGCEAHVKEDGAYWSEEK 231

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             ++            L G+  +YNALVA  +   +G+ +  + E L     +P R E V
Sbjct: 232 LFSVED--------IKLIGKHNLYNALVACVIGRIMGVPTDRMKEVLRDFRGLPHRLELV 283

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-MGKIALD 408
           G            + T N+L+     + ++  GR+I++    G +D+G     +  +   
Sbjct: 284 GDFGGVLVYNDSKSTTPNALQA---ALGSMPDGRVILI---AGGKDKGASFEHLCPLVTQ 337

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               A++  +  R        A+   G        +  EAIR A       D+L+
Sbjct: 338 KVKHAVLIGEAKRR------IADAWKGCTQVSLASSLDEAIRMAQREAKPGDILL 386


>gi|163855000|ref|YP_001629298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           petrii DSM 12804]
 gi|163258728|emb|CAP41027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bordetella petrii]
          Length = 509

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 119/389 (30%), Gaps = 55/389 (14%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A     +    +L VTGT+GK++V +  +Q+ +  G++    G     +  A  
Sbjct: 118 RALAELAESRDYRP--RLLTVTGTNGKTTVTALTRQLVEAGGMTVRAAGNIGPAALAALI 175

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           +                 +        +E SS  L+  R   +   A    N+ +DH+D+
Sbjct: 176 DA--------------LDADDLPQVWVLELSSFQLETTR--SLMADAAVVLNVTQDHLDW 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H    AY  AK RL    L     +I+  DD     +++       R            +
Sbjct: 220 HGGMDAYAQAKARL----LKMARVSIVNRDDPRVAGMVEALPAMDVRSFGRDLPELVGDM 275

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK- 338
                +       ++ E  DFD   P     +           I+  +    +    +  
Sbjct: 276 G--LELGQGMAWLVACEPNDFDEPAPPARRKKDAPPPRRGAGRISRLMPLDALRIRGQHN 333

Query: 339 ---------------LHVVPGRF-------EFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                          +   P          E            VDY + S    +     
Sbjct: 334 GLNALAALQLARVLNIGWGPMLRALREYTGEPHRAEFVRTIGEVDYINDSKGTNVGATVA 393

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHG 435
                G+ +V+   G  + Q   P+   +    A   ++   D P      +I   +   
Sbjct: 394 ALEGLGQPVVLIAGGLGKGQDFSPL-APVVTRHARAVVLIGTDGP------EIGRVLADT 446

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +   +  +A+R   E+    D +++
Sbjct: 447 GVPCVAAQDMRDAVRRGAELAQPGDAVLL 475


>gi|229086477|ref|ZP_04218649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
 gi|228696794|gb|EEL49607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
          Length = 450

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 128/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEV-----ELAYRISKAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G                     +A  ++  + + 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIG-----------------TVACEVAQTAKEN 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V+ E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 162 EIVVT-ELSSFQL--MGVETFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTKAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I    D      +         + S     +     K  A++ K +  + ++     
Sbjct: 219 YSVI--NADDADVMALSENSKGQKVLFSATKVIEDGAYIKEDALYFKGEKVVDIKDIVLP 276

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L       N L A  +    G+ +  ++  L++   V  R E+V T +        
Sbjct: 277 GKHNL------ENILAAMSIAKLSGVANEAIIAVLKRFTGVKHRLEYVTTLNNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            ++   G DR      ++       A +A        
Sbjct: 331 KATNMLATEKALSAFTQ-----PTILLAGGLDRGNEFDDLIPYFEHVKAIVAY------G 379

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ ++A    G+       N  EA+  A  +    DV+++
Sbjct: 380 QTAPKLVKAAQKAGLDMIETVDNLEEAVEKAYALSADGDVILL 422


>gi|189464537|ref|ZP_03013322.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
 gi|189438327|gb|EDV07312.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
          Length = 444

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 114/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       ++    +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----ATDQHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + +     G R     +           
Sbjct: 190 MQNYVDAKFRITQNQTPEDAFIFWNDDPI---IKRELDKHGLRAHLYPFSAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI+   +   L     V 
Sbjct: 247 VEDGEVEINEPIAFNMEQEKLALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   NS    L++++T       V+   G D+      I  
Sbjct: 307 HRLEKVATVRGVEFINDSKATNVNSCWYALQSMKT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E        +  G+P    +    +A+  A  +  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHDFFDRM--GLPVADVQTGMKDAVDAAFRLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|315103158|gb|EFT75134.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA2]
          Length = 471

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 96/272 (35%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L   L   R      GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRAVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   ++   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGEMVHDAVLAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|293604150|ref|ZP_06686558.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817375|gb|EFF76448.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 856

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 123/371 (33%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++       +   +G      G T++   +  + R+ T        A S L
Sbjct: 473 VAVAGTNGKTTTVRLTAHLLGAAGNRV---GMTNSDGVYIDNLRIDTGDCSGPRSARSVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFE 235
               V     E +  G+ +  L   +      TN+G        + +         R+  
Sbjct: 530 MHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGYISTVEDLAVVKRVIV 589

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG----------KFIHLKKVCAI 285
           + +     A++ A D    E+      +                     + ++      +
Sbjct: 590 QHVHPSGTAVLNAADPIVAEMAASCPGSITYFAEDRNHPVLATHRAQGLRSVYRDGDAIV 649

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
             +    I     D          FQV NA+ +     A+ +D  +V   L         
Sbjct: 650 AAQGAEEIRFPLADIPLTRNGTITFQVENAMASIAAAWALNLDWEVVRRGLATFVNDAQT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF     + RG  +  DY H  +++  +++ +  + + R  VV    GDR      +
Sbjct: 710 APGRFNV--FDYRGATVIADYGHNPDAILALVRAVDAMPAKRRSVVISGAGDRRDEDIRM 767

Query: 402 MGKIALDLADIAIVTDDNP-RSE---DPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIE 454
             +I     D  ++  D   R     +   +  E + G P      E      AI TA+ 
Sbjct: 768 QTEILGAAFDDVLLYQDQCQRGRADGEVLALLQEGLVGAPRTQHIEEIHGEFLAIDTALA 827

Query: 455 MLNKQDVLVVA 465
            L   D+ ++ 
Sbjct: 828 RLQAGDLCLIL 838


>gi|282854257|ref|ZP_06263594.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|282583710|gb|EFB89090.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|314923244|gb|EFS87075.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL001PA1]
 gi|314967011|gb|EFT11110.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA2]
 gi|314980967|gb|EFT25061.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA3]
 gi|315091698|gb|EFT63674.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA4]
 gi|315093068|gb|EFT65044.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL060PA1]
 gi|327327831|gb|EGE69607.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL103PA1]
          Length = 471

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 96/272 (35%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L   L   R      GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRAVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   ++   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGEMVHDAVLAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|254976849|ref|ZP_05273321.1| putative folylpolyglutamate synthase [Clostridium difficile
           QCD-66c26]
 gi|255094236|ref|ZP_05323714.1| putative folylpolyglutamate synthase [Clostridium difficile CIP
           107932]
 gi|255315989|ref|ZP_05357572.1| putative folylpolyglutamate synthase [Clostridium difficile
           QCD-76w55]
 gi|255518646|ref|ZP_05386322.1| putative folylpolyglutamate synthase [Clostridium difficile
           QCD-97b34]
 gi|255651768|ref|ZP_05398670.1| putative folylpolyglutamate synthase [Clostridium difficile
           QCD-37x79]
 gi|260684794|ref|YP_003216079.1| putative folylpolyglutamate synthase [Clostridium difficile CD196]
 gi|260688452|ref|YP_003219586.1| putative folylpolyglutamate synthase [Clostridium difficile R20291]
 gi|306521560|ref|ZP_07407907.1| putative folylpolyglutamate synthase [Clostridium difficile
           QCD-32g58]
 gi|260210957|emb|CBA66219.1| putative folylpolyglutamate synthase [Clostridium difficile CD196]
 gi|260214469|emb|CBE06938.1| putative folylpolyglutamate synthase [Clostridium difficile R20291]
          Length = 432

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388
              +         PGR E +          +D AH  +  + + K + +     ++ ++ 
Sbjct: 285 EESIRKGLINTKWPGRIEKIKE---NPIFIIDGAHNEDGAKSLAKALDKNFKGRKLTLLI 341

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           G   D+D      + +I L   +  I T  N PR+ + + +R +++  +     K    +
Sbjct: 342 GMLEDKDID---SVLEILLPHFNKVITTTPNNPRAINSDILREKVLKYVDDVTSKHEIED 398

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A+   +E  ++ D+++ AG
Sbjct: 399 AVNYTLETSSEDDIIISAG 417


>gi|294648998|ref|ZP_06726446.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825133|gb|EFF83888.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 452

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 143/445 (32%), Gaps = 72/445 (16%)

Query: 34  SSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ--G---------AEAIVVSSAYSLQDF 82
            +DSR    G                IP+ I +  G         AE I++S   + Q  
Sbjct: 34  VTDSRETPPGC-------------DQIPENIKKSFGKLDLDLLLQAEEIILSPGLAPQLP 80

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                    I VV +          R        I+A+TG++ KS+V +    + + +G 
Sbjct: 81  EIQQALEKGIPVVSDI-----QLLRRATDVP---IVAITGSNAKSTVTTLFGLMAKDAGK 132

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G                   + L K    L       + +E SS  L+      +
Sbjct: 133 KVAVGGNLGRP-------------ALDLLKDQPEL-------IVLELSSFQLET--TSHL 170

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+D H     Y  AK      +       +   DD+ S+ ++     
Sbjct: 171 NAEVAVLLNMSEDHLDRHGDMLGYHKAK----HRIFQGVKKVVYNRDDSLSRPLVPDVTP 226

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                L+     ++  L++        +     E         + G   V NAL    L 
Sbjct: 227 MQSFGLNAPDMNQYGVLREADGSMWLARGR---ERLIKTSDLYIQGMHNVANALACLALG 283

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTI 379
            AIG+ +  +LE L++   +  R E+V T  +             +    ++        
Sbjct: 284 EAIGLPTQSMLETLQQFKGLEHRCEYVQTVDQVRYYNDSKGTNVGATLAAIEGLGAAIEA 343

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             G++ ++ G  G + Q  +P+   I        I+       ED   I  + +H     
Sbjct: 344 KHGKLALILGGQG-KGQDFKPLRNAI-QKYVKTVILI-----GEDAAMI-EQALHNTTQI 395

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
               +  +A+  A +    +DV+++
Sbjct: 396 QHASSLKQAVDIAHQATQAEDVVLL 420


>gi|319744582|gb|EFV96935.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           agalactiae ATCC 13813]
          Length = 455

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 128/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         ++ +TG++GK++  + + +
Sbjct: 87  PYNNPMVKKALEKQIPVL----TEVELAYLVSE------SQLIGITGSNGKTTTTTMIAE 136

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G      G     +S                      ++     + +E SS  L 
Sbjct: 137 VLNAGGQRGLLAGNIGFPASEVV------------------QAADDKDILVMELSSFQL- 177

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +   +      TNL   H+DYH + + Y  AK  +  ++   +   + +     SKE
Sbjct: 178 -MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQG-ISKE 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K          +           K      +  +++            +PG   V NA
Sbjct: 236 LAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDD--------IGVPGSHNVENA 287

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GI + ++ E L     V  R + +G            +     +    K 
Sbjct: 288 LATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN---ILATQKA 344

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + ++       E   +++      
Sbjct: 345 LSGFDNTKVILI-AGGLDRGNEFDELIPDITG-LKHMVVL------GESASRVKRAAQKA 396

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +  +A+  A E+  + DV+++
Sbjct: 397 GVTYSDALDVRDAVHKAYEVAQQGDVILL 425


>gi|302550798|ref|ZP_07303140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468416|gb|EFL31509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 134/411 (32%), Gaps = 51/411 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G+E IV +  +              + V  +        A RL G      LAVTGT+GK
Sbjct: 73  GSELIVTAPGWKPDKPLFAAADRAGVPVWGDV-----ELAWRLRGPDAAPWLAVTGTNGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  I   +GL +  +G                     ++   + L  +    ++
Sbjct: 128 TTTVQMLASILTAAGLRTAAVGNIG------------------VSLLDAVLGEEPYDVLA 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS+ L       ++  + +  NL  DH+D+H + +AY  A  +       + +    
Sbjct: 170 VELSSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRIYEGNRVACVYN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---- 302
            AD A    V +     GCR +             +       +  +    K+       
Sbjct: 226 VADKATEDLVREADVEEGCRAIGFTLGTPAPSQLGIVEGILVDRAFVENRQKNAQELAEV 285

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                P    + NAL AA L  A G+ +  V + L        R   V        +   
Sbjct: 286 ADVDPPAPHNIANALAAAALARAFGVPAQAVRDGLRAFTPDAHRIAHVADVDGVAYVDDS 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  +++ E  L    +      IV    G  +      ++ K A  L    ++      
Sbjct: 346 KATNTHAAEASLAAYES------IVWIAGGLAKGATFDELVAKSAPRLRGAVLI------ 393

Query: 422 SEDPEKIRAEIIHGIPGFIEKG-NR------IEAIRTAIEMLNKQDVLVVA 465
             D E IR  +    P       +R        A++ A  +    D +++A
Sbjct: 394 GADRELIREALARHAPEVPVVDLDRTDTGAMRAAVQEARRLARTGDTVLLA 444


>gi|160914185|ref|ZP_02076407.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
 gi|158433996|gb|EDP12285.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
          Length = 525

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 127/368 (34%), Gaps = 25/368 (6%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           ++      L      +I+ +TG+ GK+SV   + Q+  +   +       +         
Sbjct: 167 YMKEAKQLLQQHQNLHIIGITGSYGKTSVKHILYQLIAQQYYTLMTPHSYNNKMG----- 221

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                  I L       S   V    + A         +  +K      T +G  H+   
Sbjct: 222 -------ITLTIRKQLQSLHEVFLCEMGADHVHEISALMAFVKPSWSIVTAIGPQHLSTF 274

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHL 279
           QT +   + KM+     +       I   +  +  + +      CR+++ G        +
Sbjct: 275 QTMEHIVHEKMQA----IECLPKDGIGFLNIDNAWIREYPIQNTCRIVTYGTHAAADYRI 330

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           K +          I V+G D+ F   L G+  V N      +   +GI+ +++ E  + L
Sbjct: 331 KDIVYSKQGASFKIHVKGVDYAFHTKLLGKHNVVNIAAGIAVAHCLGIELSVLQELTKHL 390

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSN-SLEMILKNIRTITSGRIIVV---FGCGGDRD 395
             V  R +   T+S      +D A+ SN         +     G+ IVV   F   GD +
Sbjct: 391 PYVEHRLQLRPTSSY---TMLDDAYNSNVEGATYALEVLAKMEGKHIVVTPGFLDLGDME 447

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           +     +GK    +AD  I+   + +S+   K   +  +         N  EA     ++
Sbjct: 448 ENAHVRLGKQLTQVADEVILVGQH-QSKHIVKGLQQAQYDSRHVYVCENIQEAFELLKQL 506

Query: 456 LNKQDVLV 463
             K  V++
Sbjct: 507 ATKDSVVL 514


>gi|77408374|ref|ZP_00785114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77172977|gb|EAO76106.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 451

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 128/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         ++ +TG++GK++  + + +
Sbjct: 83  PYNNPMVKKALEKQIPVL----TEVELAYLVSE------SQLIGITGSNGKTTTTTMIAE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLNAGGQRGLLAGNIGFPASEVV------------------QAADDKDILVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +   +      TNL   H+DYH + + Y  AK  +  ++   +   + +     SKE
Sbjct: 174 -MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQG-ISKE 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K          +           K      +  +++            +PG   V NA
Sbjct: 232 LAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDD--------IGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GI + ++ E L     V  R + +G            +     +    K 
Sbjct: 284 LATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + ++       E   +++      
Sbjct: 341 LSGFDNTKVILI-AGGLDRGNEFDELIPDITG-LKHMVVL------GESASRVKRAAQKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +  +A+  A E+  + DV+++
Sbjct: 393 GVTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|329888140|ref|ZP_08266738.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
 gi|328846696|gb|EGF96258.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
          Length = 481

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 103/293 (35%), Gaps = 33/293 (11%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+  +H+D++    A   A    F E +P     ++  D    +++  +  
Sbjct: 179 LKCTVAIITNIDPEHLDHYGDFDAVKKA-FGDFIEDIPFYGFGVVCLDHPEVQKLAAQID 237

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----------EGKDFDFLFPLPGEFQ 311
           N       +  Q        V    +  +  + +            +  +   P+ G   
Sbjct: 238 NRRLVTYGLNPQAMV-RADNVRMDPDGSRFDVVIQGQGMAALGEPARIENLHLPMAGWHN 296

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL A  +   IG+D   +   L     V  RF   G    G R+  DY H    +  
Sbjct: 297 VSNALAAIAVAREIGVDDDAIRTGLAGFGGVKRRFTTTGVAH-GVRVIDDYGHHPVEIAA 355

Query: 372 ILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED 424
           +LK  R +      +GR+I V      R    R +M   +     AD  +V D  P  E 
Sbjct: 356 VLKAARQVVQNADNTGRVIAVV--QPHRYTRLRDLMEDFSTCFSDADSVLVADVYPAGEQ 413

Query: 425 PEKIRA--EIIHGIPGFIEKGNRIEAIRTAI-------EMLNKQDVLVVAGKG 468
           P +      ++ G+  +  +   + A+  A        +     D++V+ G G
Sbjct: 414 PIEGVDKHALVEGVRRYGHRH--VAALENAAVLPRVIKDEAKPGDLVVLLGAG 464


>gi|206602134|gb|EDZ38616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 487

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 101/373 (27%), Gaps = 25/373 (6%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI---- 153
            R  +         +    ++AV GT+GKS+ ++ +    + +G   F  G   T     
Sbjct: 99  IRNVMGEM-EWASLRTSVPLVAVGGTNGKSTTSALLAHFLEAAGERVFLGGNFGTPLSEM 157

Query: 154 --SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
             S     + L T + + L+   +         V++  +       R   +     +  N
Sbjct: 158 VLSEREGSSPLPTVAVVELSSFQAETMGVFRPVVNLLLNITPDHLDRYLSVDHYRRAKWN 217

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             +       T      A              A  Y           +          + 
Sbjct: 218 AFQTMEKDSFTVLNRDPACGVYPPFSPISSRLAWFYG---------SKEPCPDRTGGLIL 268

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                                +     +            +   L            +  
Sbjct: 269 EGDPLSATLDGIEGLPPISWNLKNFPLEGMGNRQNLAAALLGAVLYLQATGKHPEQATTA 328

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + +       +P R E VG       I    A   ++  + L+      +G   +V    
Sbjct: 329 LEKAAASFRGLPHRMEVVGEWKGIRFINDSKATNVDATRLALEGY----AGHSPIVHLIL 384

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           G RD+G      +  +  +  +I        E  EKIR E+   +P      +  EA+  
Sbjct: 385 GGRDKGAPYAPLREGIRTSVKSIAVL----GEAREKIREELGSLVP-MTLCESLEEAVDV 439

Query: 452 AIEMLNKQDVLVV 464
           A    ++ D +++
Sbjct: 440 AAGQASEGDRVLL 452


>gi|296269387|ref|YP_003652019.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
 gi|296092174|gb|ADG88126.1| UDP-N-acetylmuramate/alanine ligase [Thermobispora bispora DSM
           43833]
          Length = 472

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 58/171 (33%), Gaps = 11/171 (6%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NA     +   +G+    V   L        RFE  G  + G  ++  YAH  
Sbjct: 288 PGRHNALNATAVIAVADRLGLPLGEVAAGLAAFGGAKRRFEAKG-EAGGVAVFDSYAHHP 346

Query: 367 NSLEMILKNIRTIT--SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             L   L+  R +    GR+I VF      R +      G  AL LAD  IV D     E
Sbjct: 347 TELTADLRAAREVNAGRGRVIAVFQPHLYSRTRFFADAFG-AALGLADEVIVLDVYGARE 405

Query: 424 DPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           DPE       I   +       +   +R              D+++  G G
Sbjct: 406 DPEPGVTGALIAERVPLPADRVVYAPDRESVPALVAGRARPGDIVLTMGAG 456


>gi|323352742|ref|ZP_08087712.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
 gi|322121778|gb|EFX93524.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
          Length = 459

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 129/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDMLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQVAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNEIAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+       +   +++      
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVIL------GQSAARVKRAADQA 401

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A   A    +  D++++
Sbjct: 402 GVSYLDATDVRDAAHKAFAQADPGDIVLL 430


>gi|299147132|ref|ZP_07040199.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_23]
 gi|298515017|gb|EFI38899.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_23]
          Length = 444

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 115/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +     +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEDYHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD     + +     G +     +           
Sbjct: 190 MQNYIDAKFRITQNQTPDDAFIFWNDDPI---IRQELAKHGLKAHLYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++ ++T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 247 VEDHEVKITEPIAFNMEQEELALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +       G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHEFFD--RFGLPVADVQTGMKDAVEAAYKLAKKGEAVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|94312061|ref|YP_585271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cupriavidus
           metallidurans CH34]
 gi|118595679|sp|Q1LIM4|MURD_RALME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|93355913|gb|ABF10002.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Cupriavidus
           metallidurans CH34]
          Length = 504

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 95/307 (30%), Gaps = 40/307 (13%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS  L+      +   A +  N+ +DH+D+H + +AY  AK R+F         
Sbjct: 177 VWVLELSSFQLEY--TFSLAPHAATVLNVTQDHLDWHGSMEAYAAAKARIFGPAEKGCLQ 234

Query: 244 AIIYADDAYSKEVMKRA------------------------HNAGCRVLSVGYQGKFIHL 279
            +    D  +  + +R                                            
Sbjct: 235 VLNR-QDPLTMNMARRGTTLVTFGTDLPETPGSYGVLREGGMPWLVLAEPDTEADAEQKP 293

Query: 280 KKVCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           ++           + V  K         + G     NA+ A  LC AI +    +L  L 
Sbjct: 294 RRRKKDDVAADAVVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPLNALLHGLR 353

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +    P R E+V T                +    L  +        +V+   G  + Q 
Sbjct: 354 EYRGEPHRVEWVATIDEVEYFDDSKGTNVGATVAALSGLDKH-----VVLIAGGEGKGQD 408

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             P++  +A   A   ++       +D   +R  +       I+ G+  EA+  +  +  
Sbjct: 409 FSPLVAPVA-QYARAVVLI-----GKDAGALREALGATGKPLIDAGSLEEAVEKSASLAE 462

Query: 458 KQDVLVV 464
             DV+++
Sbjct: 463 AGDVVLL 469


>gi|262199168|ref|YP_003270377.1| cytoplasmic peptidoglycan synthetase domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262082515|gb|ACY18484.1| cytoplasmic peptidoglycan synthetase domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 631

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 14/166 (8%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V N + A  +  ++GI  +++ + +     V  R E VG    G  +  DYAH   ++
Sbjct: 308 HNVGNIVAAIAVAHSLGIAPSVIRDSIAAFAGVARRQEIVGVAQ-GVYVIDDYAHHPTAV 366

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIV-TDDNPRSE- 423
              L+ +R   T  RI+ VF         +R    +    AL  AD  +V    NP S  
Sbjct: 367 TETLRGLRRRFTERRIMAVFEPRS--ATSRRKTFQREYLSALAHADSVVVGRLYNPDSIP 424

Query: 424 -----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                DPE +  ++  G        N  + +R   E     DV+VV
Sbjct: 425 PEDRFDPEALALKLHSGRTPASYIDNVDDIVRHLSEQARPGDVVVV 470


>gi|320334318|ref|YP_004171029.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
 gi|319755607|gb|ADV67364.1| cyanophycin synthetase [Deinococcus maricopensis DSM 21211]
          Length = 937

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQ 396
               PGR           R+ +DYAH  + LE +   ++ +    GR+I V G  GDR  
Sbjct: 767 FEQSPGRLNL--YEGHPFRVLLDYAHNPSGLEYLRDLVQHMRPRRGRVIGVVGVAGDRRD 824

Query: 397 GKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGF-------IEKGNRIEA 448
                MG+IA +  D  I+ +D   R   P +    +  G               +  +A
Sbjct: 825 DDMRRMGEIAAEAFDEIIIREDELRRGRAPGEGARLVAEGARSAGFADEHLTTILSEPDA 884

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A+    + D++V+ 
Sbjct: 885 VDHALRAARQGDLVVLL 901


>gi|323343869|ref|ZP_08084096.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
 gi|323095688|gb|EFZ38262.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
          Length = 458

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 108/351 (30%), Gaps = 40/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L   GT GK++ ++    I  +S L         + +         T   + +    
Sbjct: 112 HKGLCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILSDTSDFVVIEADE 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S                       ++      T+   DH+D + T++AY  +     
Sbjct: 172 FDRSFHW--------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +    +  I    +      MK+    G +V          H + +   + +      
Sbjct: 212 TLIQKGGALIIHRDLE------MKQNVQEGVKVYDYSLHEGDFHAENIVIENGEITFDFI 265

Query: 295 VEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++  D     P    + N + A  +    G  S  +   ++  H V  RF+F    +
Sbjct: 266 SPIENIKDIRLGQPIPINIVNGIAAMAMAQLNGCTSEELRYGMKTYHGVERRFDF-KIKT 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLAD 411
                  DYAH    +    K+IR +   R I          R +       +    L D
Sbjct: 325 DKLVFLSDYAHHPKEIYQSAKSIRELYKDRKITAIFQPHLFTRTRDFYKEFAEALSQL-D 383

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             I+ D  P  E P       I G+   +   N  E +     M++K+DV+
Sbjct: 384 EVILCDIYPAREQP-------ISGVTSKLIYDNLKEGVEK--SMIHKEDVI 425


>gi|300112941|ref|YP_003759516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
 gi|299538878|gb|ADJ27195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
          Length = 452

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 129/398 (32%), Gaps = 44/398 (11%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGK 126
            A++  +   +      +    P + V   R    +              ++ +TG++GK
Sbjct: 68  AALIAEAEQLVVSPGVALSE--PAIQVAQARGIPVIGDI-ELFASYAKAPVIGITGSNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V S ++ + +++G      G     +    +  +     + L                
Sbjct: 125 STVTSLLEMMARQAGKQVLAGGNLGLPALELLEKPVPDLYILEL---------------- 168

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
              SS  L+      +  +A    N+  DH+D +    AYF AK R++            
Sbjct: 169 ---SSFQLET--TYTLNTVAACVLNISPDHMDRYPDLDAYFQAKARIYRGTGTMII---- 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D +    + + H +  R            L++        +     E        PL
Sbjct: 220 -NTDDFRVASLAQPHRSCLRFTLGNPNNNEYGLREYGGEIWLAR---GHEELLSTRRLPL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + NAL A  L  A G+  A +L  L+    +P R E++                 
Sbjct: 276 AGRHNLANALAALALGEAAGLPRAAMLSALQVFPGLPHRCEWLAEVKGVRWYNDSKGTNV 335

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    ++ +     G+++++ G  G +     P+   +      + ++  D  R E   
Sbjct: 336 GATVAAIEGMP--CQGKLVLIAGGVG-KGADFSPLREPLVQRARAVVLIGQDASRLE--- 389

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++ G        +  EA+  A  +    D +++
Sbjct: 390 ----AVLAGGLPLYRANSMGEAVAKASALAQSGDCVLL 423


>gi|224024607|ref|ZP_03642973.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
 gi|224017829|gb|EEF75841.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
          Length = 444

 Score = 60.7 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 113/352 (32%), Gaps = 39/352 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I +++GL+    G                          
Sbjct: 103 AKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIG-------------------QSLA 143

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++     +  +E SS  LD   +           N+  DH+D +  Q   +       
Sbjct: 144 FQVAKCNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYGYQMQNYVDAKFRI 201

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +        I + DD   +  + +    G        + + +            +    
Sbjct: 202 IQNQTDADAFIFWNDDPVIQRELHKYGIHGHYYPFAEKREEGLAAFVEENKVYFTEPIAF 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              ++      L G   ++N++ A       GI    + E L     V  R E V     
Sbjct: 262 NMEQE---ELALTGTHNLFNSMAAGISANIAGIRKECIREALNDFKGVEHRLEKVCRVRG 318

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADIA 413
              I    A   NS    L++++T    + +++    G +D+G     +  +  +     
Sbjct: 319 VEYINDSKATNVNSCWYALQSMKT----KTVLIL---GGKDKGNDYNEIADLVREKCSGL 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I    +       +   +   G     ++  +  +A+  A +M  K + +++
Sbjct: 372 IFMGLH------NEKLHDFFDGFGLPIVDVQSMKDAVDAAYQMAKKGETVLL 417


>gi|239987056|ref|ZP_04707720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 11379]
          Length = 475

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 133/408 (32%), Gaps = 48/408 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V +  +          +   + V  +    L+       GK     LAVTGT+GK++ 
Sbjct: 73  LVVTAPGWQPDKPLFLAAAEAGVPVWGDVE--LAWRLRGDNGKKAAPWLAVTGTNGKTTT 130

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G                     ++   + L       ++VE 
Sbjct: 131 VRMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGETEYDVLAVEL 172

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +AY  A  +         +     AD
Sbjct: 173 SSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRVYEGNTVACVYNVAD 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLF 304
            A    V +     GCR +             V       +  ++   K           
Sbjct: 229 PATEDLVREADVEEGCRAIGFTLGAPGPSQLGVVDGILVDRAFVANRQKQAQELAEVTDV 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AA L  A G++ A V + L        R E V        +    A 
Sbjct: 289 DPPAPHNIANALAAAALARAFGVEPAAVRDGLRAFRPDAHRIEHVADIGEVAYVDDSKAT 348

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L +  +      IV    G  +      ++   A  L  + ++        D
Sbjct: 349 NTHATEASLASYDS------IVWIAGGLAKGATFDELVIGAAKRLRGVVLM------GAD 396

Query: 425 PEKIRAEIIHGIPGFIEKG-NR------IEAIRTAIEMLNKQDVLVVA 465
              I   +    P       +R       EA+  A E+    D +++A
Sbjct: 397 RALIHEALTRHAPEVPVVDLDRTDTGAMSEAVARAAELARPGDTVLLA 444


>gi|238019064|ref|ZP_04599490.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
 gi|237864319|gb|EEP65609.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
          Length = 456

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 94/289 (32%), Gaps = 18/289 (6%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S      +  E SS+ L+   +   + I     N+  DH+  H+T + Y  AK R+FE 
Sbjct: 152 YSMPADGFLVAELSSYQLET--IKHFRPIGAIMLNITADHLARHKTMENYIAAKERIFEN 209

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L  +   +   DD    ++  R  +   ++          +  K               
Sbjct: 210 QLSTDFMVL-NIDDPIVADMEHRVLSHILKISQHQVVPNGAYYDK---GQCYVTKDGIAT 265

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   + N L    L   +G+ +  +   + + H V  R E V T     
Sbjct: 266 PVIGSDDIHIPGSHNIENILTVIALTYVLGVPAETIHRIISEFHGVEHRLERVKTIDGIT 325

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                 A   +S+   L++          V+   GG           ++  D     I  
Sbjct: 326 FYNDSKATNVDSVVKALESFDQ------SVILLAGGHDKMTPLEDFMQLVKDHTKAVIFM 379

Query: 417 DDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   R E      A    G+       +  +A+    ++ ++ D++++
Sbjct: 380 GEAADRFE-----AAAKEAGVQPIYRASSMKDAVEQGYKLADQGDIVLL 423


>gi|218893505|ref|YP_002442374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa LESB58]
 gi|218773733|emb|CAW29547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 448

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 115/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+A+TG++ KS+V + V ++   +       G   T               +
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +     Y  
Sbjct: 150 DLLADDIEL-------YVLELSSFQLET--CDRLNAEVATVLNVSEDHMDRYDGMADYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA ++ ++           S G          +     +
Sbjct: 201 AKHRIFRGARQ----VVVNRADALTRPLIADT----VPCWSFGLNKPDFKAFGLIEEDGQ 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L+    +  R ++
Sbjct: 253 KWLAFQFDKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFPGLAHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+  +V   GGD        + +    
Sbjct: 313 VRERQGVSYYDDSKATNVGAALAAIEGLGADIDGK--LVLLAGGDGKGADFHDLREPVAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 371 FCRAVVL-----LGRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|154252864|ref|YP_001413688.1| UDP-N-acetylmuramate--L-alanine ligase [Parvibaculum
           lavamentivorans DS-1]
 gi|171769613|sp|A7HVU8|MURC_PARL1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154156814|gb|ABS64031.1| UDP-N-acetylmuramate--alanine ligase [Parvibaculum lavamentivorans
           DS-1]
          Length = 491

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 96/286 (33%), Gaps = 19/286 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+DY+ +  A  +A    F E +P    A++  D    + ++ R  
Sbjct: 174 LPATIAIVTNIDPEHLDYYGSFDAAKDA-FLAFVENVPFYGAAVMCIDHPEVQALIGRVR 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP------LPGEFQVYNA 315
           +          Q                      + K             + G   + N+
Sbjct: 233 DRRIVTYGTNPQADIRATNARVEDGFNVFDVAITDRKTGTAREMTGVRLAMHGTHNMLNS 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+   +GI    +   LE    V  RF FVG +     IY DY H    +  +L+ 
Sbjct: 293 LAAIGVATQMGIADDKIRAALEGFGGVKRRFTFVG-SWNDVNIYDDYGHHPVEIAAVLQA 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP--EKIRAE 431
            R+ T GR I V      R      +  +       AD  IV D     E P     R  
Sbjct: 352 ARSATKGRTIAVV--QPHRYTRLHNLFDEFCACFNDADAVIVADVYEAGEKPIEGASRDA 409

Query: 432 IIHGIPGF----IEKGNRIEAIRTAIEM-LNKQDVLVVAGKGHETV 472
           ++ G+       +   +  EA+   I       D++V  G G  T 
Sbjct: 410 LVEGLRDRGHRNVMALDGPEALPRLIAETARPGDLVVCLGAGSITY 455


>gi|223933921|ref|ZP_03625882.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
 gi|223897398|gb|EEF63798.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
          Length = 447

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 136/427 (31%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         +  G   I  S    L D    +    P +  DN    K +    
Sbjct: 36  NDGKPFEENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGI 95

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++       +   G         
Sbjct: 96  PVWTEVELAYLVSDAP---IVGITGSNGKTTTTTMIAEVLNAGNKPAKLCGNIGY----- 147

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                  P+      A +  +      + +E SS  L     +  +      TNL   HI
Sbjct: 148 -------PASSVAQTATAEDT------LVMELSSFQL--MGTESFRPHIAVVTNLIASHI 192

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  +  ++  ++   + +      + + ++       + ++       
Sbjct: 193 DYHGTFEDYVAAKWMIQGQMAAEDFVVLNFNQKEAKE-LAEQTKATVVPLSTLEVVDGAY 251

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                     +  +              +PG   V NAL    +   +G+D   + E L 
Sbjct: 252 LADGKLYFKGEYIMD--------ADQIGVPGSHNVENALATIVVAKLLGVDRQAIQESLS 303

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FVG  +         +     +    K +    + ++I++   G DR   
Sbjct: 304 AFGGVKHRLQFVGEINGVSFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 359

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  +   L  + I+    PR +                IE  +  +A R A  +  
Sbjct: 360 FDELVPDLVG-LKKMVILGQSAPRVQRAADKAE------VETIEALDIADATRKAFAIAE 412

Query: 458 KQDVLVV 464
           K D++++
Sbjct: 413 KGDIVLL 419


>gi|330832323|ref|YP_004401148.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
 gi|329306546|gb|AEB80962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
          Length = 449

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 136/427 (31%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         +  G   I  S    L D    +    P +  DN    K +    
Sbjct: 38  NDGKPFEENPTAQSLLEDGIRVICGSHPLELLDEDFALMVKNPGIRYDNPMVEKAIGKGI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++       +   G         
Sbjct: 98  PVWTEVELAYLVSDAP---IVGITGSNGKTTTTTMIAEVLNAGNKPAKLCGNIGY----- 149

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                  P+      A +  +      + +E SS  L     +  +      TNL   HI
Sbjct: 150 -------PASSVAQTATAEDT------LVMELSSFQL--MGTESFRPHIAVVTNLIASHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH T + Y  AK  +  ++  ++   + +      + + ++       + ++       
Sbjct: 195 DYHGTFEDYVAAKWMIQGQMAAEDFVVLNFNQKEAKE-LAEQTKATVVPLSTLEVVDGAY 253

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                     +  +              +PG   V NAL    +   +G+D   + E L 
Sbjct: 254 LADGKLYFKGEYIMD--------ADQIGVPGSHNVENALATIVVAKLLGVDRQAIQESLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FVG  +         +     +    K +    + ++I++   G DR   
Sbjct: 306 AFGGVKHRLQFVGEINGVSFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  +   L  + I+    PR +                IE  +  +A R A  +  
Sbjct: 362 FDELVPDLVG-LKKMVILGQSAPRVQRAADKAE------VETIEALDIADATRKAFAIAE 414

Query: 458 KQDVLVV 464
           K D++++
Sbjct: 415 KGDIVLL 421


>gi|328952332|ref|YP_004369666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452656|gb|AEB08485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 467

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 117/361 (32%), Gaps = 39/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A     +    + A++GT+GK++  + V ++   SG      G   T           
Sbjct: 107 EVAGWHLKRP---VAAISGTNGKTTTTTLVGKMLLASGKRPLVGGNIGTPL--------- 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L    +         + +E SS  LD       +  A +  N+  DH+D +   
Sbjct: 155 ----VDLLSQQAEADC-----IILEVSSFQLDT--APSFRPRAAALLNISEDHLDRYPDF 203

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           QAY  +K  LF         A++ ADD  +  +  +  +      +              
Sbjct: 204 QAYARSKAGLFRR-QGPSETAVLNADDPKAAALADQVQSQVYLFSTRKKLTFGAWQAGES 262

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 +     E K       LPG   + N + A  L + +G       E L +   +P
Sbjct: 263 LRVCLAR---GPEAKFPLNKIVLPGRHNLENIMAALLLALEMGATPQGCAEALARFKGLP 319

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E+V                  ++   L+        R +V+   G D+    RP+  
Sbjct: 320 HRLEWVANIGGVDFYDDSKGTNVGAVVRSLE-----HFDRPVVLIAGGRDKGGDYRPL-S 373

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +        I+       E  +KI A  + G        +  +A+  A    +  +V++
Sbjct: 374 ALLRQRVKKVIL-----LGEAQDKIAAA-LSGAALMQPAADMAQAVELAYAAASSGEVVL 427

Query: 464 V 464
           +
Sbjct: 428 L 428


>gi|303246308|ref|ZP_07332588.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
 gi|302492371|gb|EFL52243.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
          Length = 470

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 150/417 (35%), Gaps = 56/417 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           A+ +V S+A + ++    A      P++     R   L+       G      +AV GT 
Sbjct: 78  ADVVVKSTAVTNENPEVVAARERGIPVI----PRAEMLAELMRLRNG------IAVAGTH 127

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S +  I   +G     I     ++++    RL     +      S         
Sbjct: 128 GKTTTTSLLATIFTEAGYDPTVI-IGGRLNAYGAGARLGQGEYLIAEADESD-------- 178

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  IA   TN+  DH+D++    A  +A    F   +P     
Sbjct: 179 ------------GSFLCLSPIASVVTNVDADHLDHYADLAAIDDA-FVDFLNGIPFYGVN 225

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFL 303
           ++  DD     ++ R       +L+ G   +     K+       + +++++GKD  +  
Sbjct: 226 VVCLDDPGVARLLPRV---NRPILTYGVTSQARLRGKILETGAASRFSVTLDGKDLGEMR 282

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
              PG   V NAL A GL +  GI+  ++   L K   V  RFE  G    G  +  DY 
Sbjct: 283 LAHPGRHNVLNALGAIGLSLEAGIELPVIAAALAKFGGVGRRFERKG-ERNGVVVVDDYG 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    +   L   RT+   R +VV        + K  + G        AD  ++T+  P 
Sbjct: 342 HHPAEIRATLATARTVYPDRRLVVAFQPHRFSRTK-ALFGDFCTCFEAADELLLTEIYPA 400

Query: 422 SEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           SE P          + IR      +  + +     EA+     ++   D+L+  G G
Sbjct: 401 SEAPIPGVSGESLAQGIRQVSKTNVSYYRDFPAMEEALP---GIVRPGDLLLTLGAG 454


>gi|258546154|ref|ZP_05706388.1| UDP-N-acetylmuramate--alanine ligase [Cardiobacterium hominis ATCC
           15826]
 gi|258518579|gb|EEV87438.1| UDP-N-acetylmuramate--alanine ligase [Cardiobacterium hominis ATCC
           15826]
          Length = 479

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 142/452 (31%), Gaps = 68/452 (15%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIA--QGAEAIVVSSAYSLQDFSA--TIRSNTPI 92
           R    G  +F         GH     A    + A  +V SSA   ++           P+
Sbjct: 58  RLAAKGATLFF--------GH-----AAENVKDASVVVTSSAIDPKNPEVLRARELGIPV 104

Query: 93  LVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +     R+   L+      +G      +AV GT GK++  S +  I   +GL        
Sbjct: 105 I-----RRAEMLAELMRFRFG------IAVAGTHGKTTTTSLIASILADAGL-------- 145

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
                   D        +  A + + L          + S           ++ +    T
Sbjct: 146 --------DPTFVIGGVLTAAGSNARLGDGQYLVAEADESDASF-----LHLQPMMSVVT 192

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH++ +             F   LP    A++  DD   + ++             
Sbjct: 193 NIDADHLENYGGSFDNLKQGFVRFLHNLPFYGLAVLCIDDEGVQSILGDVGRPVRTYGFS 252

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                     +   +     V   V G+ F     +PG+  V NAL A  +   +G+  A
Sbjct: 253 EAAEVRAVNVRQVGLKMHFDVVDKVSGETFPLALSMPGKHNVLNALAAFIITSELGLTRA 312

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRII-V 386
            +   L +   V  RF   G          ++ DY H  N +  +L+      +GR I  
Sbjct: 313 EITAGLAQFKGVGRRFTHHGIIEHEHGRAEVFEDYGHHPNEIRAVLQAAAEGFAGRRIFA 372

Query: 387 VFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPG 438
           VF      R +       ++  +  +  ++TD     E P        +   I   G   
Sbjct: 373 VFQPHRFTRTRDCLDDFAEVLSN-CEALVLTDVYSAGEAPIAGADSRALARAIRAHGKVE 431

Query: 439 FIEKGNRIEAIRTAI--EMLNKQDVLVVAGKG 468
            +   +   AI   +   +L   DV++  G G
Sbjct: 432 PVLIAD-KAAINQQLYDNLLADGDVVIYFGAG 462


>gi|269958264|ref|YP_003328051.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma centrale str.
           Israel]
 gi|269848093|gb|ACZ48737.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma centrale str.
           Israel]
          Length = 472

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 116/421 (27%), Gaps = 62/421 (14%)

Query: 66  QGAEAIVVSSAYSLQDFSA--TIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTG 122
           + A+ +V S+A    +      I +  P+L   +   K L               + V G
Sbjct: 68  RNADVVVYSNAIKDNNIELQCAIAAGKPVLRRTELLSKALG----------TRRTIVVAG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  I + +G+            S+  + ++ +     +    S  S    
Sbjct: 118 SHGKTSTTGMIASIMEHAGMDPTVF-IGGIAFSYNNNYKMGSGEWAVVEADESDSSFT-- 174

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +       TNL  +H D +   +            +    +
Sbjct: 175 ------------------ALPCEVAVVTNLEWEHPDKYACLETLKGVFSDFLCNVKAGGA 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +     +                          +              +    +    
Sbjct: 217 AVVPSGLSSVLGNNAVCGKTTYGLTEGDLLVSNITYASDATVFDIVDGTEVCHGVR---- 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P+PG   V NAL A      +G+D + +   LE    V  RFE + ++ RG     DY
Sbjct: 273 -LPVPGRHNVENALAAVAAVKRLGVDCSCIKSGLENFMGVRRRFEVI-SSVRGVTFVDDY 330

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AH    ++      +   +G  ++         R Q              D  I+TD  P
Sbjct: 331 AHHPTEIDATRNTAKLFAAGGRVIGILQPHRFTRVQHFFNDFTAAVSKF-DHMILTDVYP 389

Query: 421 RSEDP------EKIRAEIIH-------GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
             E+         I   + +                + I A+          DV+V  G 
Sbjct: 390 AGEEVISGCESLDIVRAVKNLGFDRIVHASDVHTITDVISAV------AGPGDVVVAMGA 443

Query: 468 G 468
           G
Sbjct: 444 G 444


>gi|229075669|ref|ZP_04208651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
 gi|229098383|ref|ZP_04229328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|229104475|ref|ZP_04235142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228678917|gb|EEL33127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228685000|gb|EEL38933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|228707445|gb|EEL59636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
          Length = 450

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 126/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGRKHPIIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +     F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVESFQPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKILFSTAKENEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L           IV+   G DR      ++       A   +VT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---LVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A     + DV+++
Sbjct: 383 ---PKLVRAAEKVGLDIIESVDTLDEAVVKAYAHSTEGDVILL 422


>gi|302206518|gb|ADL10860.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|308276760|gb|ADO26659.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 485

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 153/471 (32%), Gaps = 85/471 (18%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQ------GAEAIVVSSAYSLQDFSATI 86
           DSR +      +A+   G     GH     A             +V S A   QD    +
Sbjct: 44  DSRAV------LALRSMGAHVAVGH-----AAENLSIAGEKPTVVVTSFAAIPQDNPELV 92

Query: 87  RS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +     P++   +    L               + + GT GK+S  S      Q +G+ 
Sbjct: 93  AARELGIPVIRRSDLLGELME---------GSTQVLIAGTHGKTSTTSMAVVAMQAAGMD 143

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                    ++    +    T          S  S                         
Sbjct: 144 -PSFAIGGQLNKAGTNAHQGTGDAFVAEADESDASLLRYK-------------------- 182

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D+ ++++AY       F + L      ++  DD ++  + ++ H  
Sbjct: 183 PNIAVITNIEPDHLDFFKSEEAY-FEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKIHEK 241

Query: 264 GCRVLSVGYQGK----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              +  VGY                ++     H+    TI V G++ + +   PG   V 
Sbjct: 242 HKDIKVVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVL 301

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSL 369
           NA  A    +  G D   +   +     V  RFE+ G     +  G  +Y DYAH    +
Sbjct: 302 NAAAALTAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEV 361

Query: 370 EMILKNIR----TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +L   R        GR++V+F      R           AL LAD AIV D     E 
Sbjct: 362 SAVLTAARAKLQARGQGRLLVIFQPHLYSRTINFVDEFA-AALSLADEAIVLDIYGAREK 420

Query: 425 PEK-----IRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P +     I  + +  IP   E    +  EA+    ++    D+++  G G
Sbjct: 421 PVEGVDSRIITDKMT-IPAHFEPDFSHVPEAVA---DLAAPGDLVITMGAG 467


>gi|300858813|ref|YP_003783796.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686267|gb|ADK29189.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331073|gb|ADL21267.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 485

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 153/471 (32%), Gaps = 85/471 (18%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQ------GAEAIVVSSAYSLQDFSATI 86
           DSR +      +A+   G     GH     A             +V S A   QD    +
Sbjct: 44  DSRAV------LALRFMGAHVAVGH-----AAENLSIAGEKPTVVVTSFAAIPQDNPELV 92

Query: 87  RS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
            +     P++   +    L               + + GT GK+S  S      Q +G+ 
Sbjct: 93  AARELGIPVIRRSDLLGELME---------GSTQVLIAGTHGKTSTTSMAVVAMQAAGMD 143

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                    ++    +    T          S  S                         
Sbjct: 144 -PSFAIGGQLNKAGTNAHQGTGDAFVAEADESDASLLRYK-------------------- 182

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D+ ++++AY       F + L      ++  DD ++  + ++ H  
Sbjct: 183 PNIAVITNIEPDHLDFFKSEEAY-FEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKIHEK 241

Query: 264 GCRVLSVGYQGK----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
              +  VGY                ++     H+    TI V G++ + +   PG   V 
Sbjct: 242 HKDIKVVGYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVL 301

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVDYAHTSNSL 369
           NA  A    +  G D   +   +     V  RFE+ G     +  G  +Y DYAH    +
Sbjct: 302 NAAAALTAGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEV 361

Query: 370 EMILKNIR----TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +L   R        GR++V+F      R           AL LAD AIV D     E 
Sbjct: 362 SAVLTAARAKLQARGQGRLLVIFQPHLYSRTINFVDEFA-AALSLADEAIVLDIYGAREK 420

Query: 425 PEK-----IRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P +     I  + +  IP   E    +  EA+    ++    D+++  G G
Sbjct: 421 PVEGVDSRIITDKMT-IPAHFEPDFSHVPEAVA---DLAAPGDLVITMGAG 467


>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
 gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
          Length = 492

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 85/406 (20%), Positives = 147/406 (36%), Gaps = 40/406 (9%)

Query: 68  AEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  IVVS    L +   +  + S  P +        L L A          I AVTGT+G
Sbjct: 86  ASRIVVSPGVPLSEPILAYAMDSGIPTI------SELGLAAEAFPK--AVKIAAVTGTNG 137

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTH 184
           KS+V +F  QI Q++G+ +F  G               TP      +   +         
Sbjct: 138 KSTVTTFTGQILQQAGVRTFIGGNLG------------TPFSDAACECFKFPSDDPPYQV 185

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ L+           G   NL  DH++ H++ + Y   K RLFE +   +   
Sbjct: 186 TVLEVSSYQLELP--GSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERMDSSKLSI 243

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I +A D + ++V  + ++   +       G  +  +   A+                   
Sbjct: 244 IPHA-DEFLRKVAYKYNSGSTKAWLGALPGIQLDSQARRAVVVVPTTKAEARLYLSGLKA 302

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
                 Q         L + +G+D   +   + +L  +P R + VG + +G     D  A
Sbjct: 303 VGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWINDSKA 362

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDD 418
              ++    +K +      R  V+   G  +   +   +G     L+D      AIVT  
Sbjct: 363 TNVDAAYTGIKGLAD----RKAVILLGGLAKVLDQDGSLG--FKKLSDLLQNHRAIVTF- 415

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  EK   E    IP F       +A+  A ++  + D++++
Sbjct: 416 GAFGEQIEKELKEANVSIPCFRS-LTMEDAVARAEKLSKQGDIILL 460


>gi|229198024|ref|ZP_04324738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
 gi|228585503|gb|EEK43607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
          Length = 450

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 GDIVLPGQHNLENILAAMSISKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|332653809|ref|ZP_08419553.1| tetrahydrofolate synthase [Ruminococcaceae bacterium D16]
 gi|332516895|gb|EGJ46500.1| tetrahydrofolate synthase [Ruminococcaceae bacterium D16]
          Length = 422

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRP 400
            P R E V        I +D  H    +  +   +  +  G+ +I + G  GD+D    P
Sbjct: 287 WPARLELVRR---NPDILLDGGHNPQCMAALHDALEELYPGKKMIFLTGVLGDKDY---P 340

Query: 401 IMGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNK 458
            M    L LA     +T D+PR+   ++  A+ +HG+           + I+ A+ +   
Sbjct: 341 DMINKILPLAKSFVTITPDSPRALSAQE-LADYLHGLGIQADACETTEQGIQQALALAGP 399

Query: 459 QDVLVVAG 466
           +DV+   G
Sbjct: 400 EDVVCACG 407


>gi|227499842|ref|ZP_03929935.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217951|gb|EEI83224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
          Length = 438

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 118/353 (33%), Gaps = 37/353 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                I+++TGT+GK+S  S V  I   + + S  +G       +   N         L 
Sbjct: 94  YPQAKIISITGTNGKTSSTSMVNHIVNEACIKSIAVGNIGEGILWQMYNNKDAFFACEL- 152

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                             SS  L  H            TN+  DHID+H + + Y N+K+
Sbjct: 153 ------------------SSFQL--HDTKTYHPHIACITNITEDHIDWHGSFEDYINSKL 192

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            + +     +   I + +D   ++  K          S     +  +LK        ++ 
Sbjct: 193 NITKNQDENDFLIINH-EDKILQDHKKDYKAQVYEFSSKNEVERGAYLKDGAIYLKDKEE 251

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
              ++  +      + G     N +VA       GI    +++ L     +  R E+V T
Sbjct: 252 IKVIDVDEL----SVIGSHNYENIMVALLSTYLFGIKIQDIIKGLRSFKAIEHRLEYVDT 307

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
             +            +S    +++         +++   G D+       +     +   
Sbjct: 308 IRKVKIYNDSKGTNVDSSIKAIESFTE-----PLIIIAGGYDKHIDYTDYVKSFKKNGKL 362

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + I+       +  +K++    +    + E  +  +AIR   E   + DV+++
Sbjct: 363 MVIM------GQTKDKLKKLCENYQVAYKEAEDMEDAIRICFENAKEGDVILL 409


>gi|167755735|ref|ZP_02427862.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
 gi|167704674|gb|EDS19253.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
          Length = 446

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 112/362 (30%), Gaps = 42/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A ++  K   + + VTGT+GK++  + + +I +         G   T       +   
Sbjct: 99  ELAFQVAKKQ--HYIGVTGTNGKTTTVTLIDKILKGQYQHVHLAGNVGTPLCDVVLDNDL 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                               +V +E S+  L    ++  K    +  NL  DH+DY  + 
Sbjct: 157 LNE--------------ENHYVVIEMSNFQLLD--IERFKPYVSTIINLTPDHLDYMASL 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y  A      +    +   ++  DD    E +++      +V           +K+  
Sbjct: 201 DEY-YASKTNIYKNTDLDDYFVVNLDDKTVMEYLEKYPVPCNQVTMSLIHEADCMIKEQA 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +  + +    + K         G   + N + A  +     +   ++   +     V 
Sbjct: 260 IYYRDELIINLADIKVV-------GRHNIQNIMTAICIAKKCDVPVTVINREIASFIGVE 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIM 402
            R EFV   +         A  +++  + LK            V    G  D+G     M
Sbjct: 313 HRIEFVREINGVKIYNDSKATNTDATIIALKAFEQP-------VILLMGGFDKGLDLTEM 365

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                 ++ +        R ++      ++   +       N   A   AIE     D++
Sbjct: 366 ATYGNKISHLVTFGAAGERFKN------DM--HVANSSSVENLEAATLLAIEKAKAGDII 417

Query: 463 VV 464
           ++
Sbjct: 418 LL 419


>gi|85708883|ref|ZP_01039949.1| hypothetical protein NAP1_06570 [Erythrobacter sp. NAP1]
 gi|85690417|gb|EAQ30420.1| hypothetical protein NAP1_06570 [Erythrobacter sp. NAP1]
          Length = 474

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 130/379 (34%), Gaps = 43/379 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +   S L+ +  E+ +AV GTSGKS+V   +  I   +G     +     +     D   
Sbjct: 106 AELLSNLFNR-AEHSVAVGGTSGKSTVTGMIAWIMAEAGRDPTVM--NGAVMKNFADGSN 162

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                     A + + S       V+ S   +  +R        G   N+  DH      
Sbjct: 163 --------PFASARMGSGRSFVSEVDESDGSIALYR-----PSVGVLLNVSLDHKSIE-- 207

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                    +LF + +     A+I  D+  ++ + +R  N     +        +  + +
Sbjct: 208 ------ELRQLFGDYVAISDRAVINFDNEEARFLAERVKNVVSFAVHDQSADITVEPESI 261

Query: 283 CAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                  +  +      + F  + P+PG   + NAL A     A GI+    +  L+   
Sbjct: 262 EQDALGIRAAVIDNRTREVFPLILPMPGMHNLSNALAAIAAASASGIEVRSAVYVLKDFA 321

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            +  RF+ VGT++ G  +  D+ H        L+ ++  T GR+I  F   G    G   
Sbjct: 322 GLARRFDVVGTSASGITVIDDFGHNPEKCAATLRTLKA-TEGRVIAFFQPHG---YGPLK 377

Query: 401 IMGKIALD-------------LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            MG    +             + D         RSE  E+I A I            R  
Sbjct: 378 QMGHELAETFAKELGADDITIMCDPVYFGGTVDRSEGTERIIAMIEEHGGTAEHIPEREA 437

Query: 448 AIRTAIEMLNKQDVLVVAG 466
                IE+ +  D +V+ G
Sbjct: 438 CGDRIIEIASPGDRIVIMG 456


>gi|91977859|ref|YP_570518.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
 gi|123762580|sp|Q133X2|MURC_RHOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91684315|gb|ABE40617.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB5]
          Length = 467

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 138/421 (32%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  AGADVLVVSTAIKRDNPELLAARAQRIPVV---RRAEMLAELMRL------KSCIAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDA-GDVDPTVINGGIINAYGTNARLGAGDWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A  +A  R+F E +P    
Sbjct: 168 -------------GTFLKLPADVAVVTNVDPEHLDHFKTFDAVQDA-FRIFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEG 297
           A++  D    + ++ +  +          Q     L               +        
Sbjct: 214 AVMCIDHPVVQALVGKIEDRRIITYGENPQADARLLDLKPSGAGSTFKVAFRDRKAGTAH 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D + P+PG     NA+ A  +   +G+    + + L     V  RF   G    G  
Sbjct: 274 EITDLMLPMPGPHNALNAVAAIAVAHELGLSDDTIRKALAAFGGVRRRFTKTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DY H    +  +LK  R  TS ++I V      R    + +  +       AD  IV
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQSTSAKVIAVV--QPHRFTRLQSLFEEFCTCFNDADTVIV 390

Query: 416 TDDNPRSEDPEK-IRAE------IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D  P  E P   I  +        HG    I   +          +    D +V  G G
Sbjct: 391 ADVYPAGEAPIAGIDRDHFVLGLRAHGHREVIPLQDSASLAGVVAGVARSGDYVVCLGAG 450

Query: 469 H 469
           +
Sbjct: 451 N 451


>gi|332978084|gb|EGK14822.1| tetrahydrofolate synthase [Desmospora sp. 8437]
          Length = 440

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 120/398 (30%), Gaps = 44/398 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--------- 155
                + +     + + GT+GK S A+ V  + Q +G                       
Sbjct: 36  LGRLNHPERRLKFIHIAGTNGKGSTAAMVASVLQEAGYPVGMFSSPYLHHWGERITLDGE 95

Query: 156 ----------------------FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                                      R+T      L   L +        V  E    G
Sbjct: 96  PIPEKSFVHWAGQVAQLVEEMDREGVGRVTPFEFWTLVAILYFAKEAVPWFVVWETG-LG 154

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                 + +  +    TN+G DH     +T       K  + +  +P  +        + 
Sbjct: 155 GRLDSTNVVYPLVSVITNVGHDHTHILGETVTQIAGEKAGIIKPGVPVVTACEEEEALSV 214

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
              V +       R+            ++  +             +             V
Sbjct: 215 LSTVAEEKQCRLYRLHREFDVVPRSGGEEGESFSFHNPFRPLERVRIPLRGEHQVKNGAV 274

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
               +         +     +    +    PGR E V   S+  R+ +D AH     E +
Sbjct: 275 ALMTLEILRKYYATVLEETDVLAGMENVRWPGRLEQV---SQHPRVLLDGAHNPEGAEAL 331

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAE 431
            + +R ++  R++++     D+D      + K  L L D  +VT  D PR  +P ++R E
Sbjct: 332 ARALRDLSCDRLLLLTAVLEDKDATG---ILKPLLPLVDRVMVTGVDQPRGLEPARLR-E 387

Query: 432 IIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVVAG 466
           +   +   +E G      E +R  +E   ++D +VVAG
Sbjct: 388 VAARLRPDLEIGQATGADEGLRRLLEEAGERDCIVVAG 425


>gi|226941967|ref|YP_002797041.1| UDP-N-acetylmuramate--L-alanine ligase [Laribacter hongkongensis
           HLHK9]
 gi|254766007|sp|C1D5L5|MURC_LARHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226716894|gb|ACO76032.1| MurC [Laribacter hongkongensis HLHK9]
          Length = 469

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 135/422 (31%), Gaps = 54/422 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA  +V S+A    +          I +V    + L+       G      +A+ GT GK
Sbjct: 64  GANVVVTSTAVQADNPEVMAARAAGIPIVPRA-QMLAELMRFKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V     R+G   +F IG    +++   + RL +   +      S  S       
Sbjct: 117 TTTTSLVASALGRAGLDPTFVIG--GRLTAAGSNARLGSGDYLVAEADESDASFL----- 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH+D +             F + LP    A+
Sbjct: 170 ---------------CLSPVMAVVTNIDADHMDTYGHDFERLKQAFIDFLQRLPFYGRAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFD 301
           +  DD + +E++                   +    +  +  +    +  + +       
Sbjct: 215 LCIDDKHVREIL--PFVTRPLTTYGLTPDADVRADNIRPVAGQMLFDVVWQQQGEEQRHP 272

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----R 357
               LPG   V NAL A  + +  G D   +   L +   V  RF+  G  +        
Sbjct: 273 VTLNLPGRHNVLNALAAIAIGLECGADIGAIAAGLTEFSGVGRRFQRYGDIALPAGGQAT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIV 415
           +  DY H    +   L   R     R  +V      R    R +       L+  D  ++
Sbjct: 333 VVDDYGHHPVEMAATLAAARGAFPERR-LVLAFQPHRYTRTRDLFEDFVGVLSTVDALLL 391

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
            +  P  E P  I A     +   +    ++E +          T ++ L   DV++  G
Sbjct: 392 AEVYPAGEAP--IVAADGRALARAVRVAGKVEPVFVERIADLPATLLDQLQDGDVVLTMG 449

Query: 467 KG 468
            G
Sbjct: 450 AG 451


>gi|325846778|ref|ZP_08169693.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481536|gb|EGC84577.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 463

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 124/400 (31%), Gaps = 42/400 (10%)

Query: 78  SLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           + ++  A      P++    TR  FL            +N +AV+G+ GKS+  S + + 
Sbjct: 83  NNEELIAARSLGVPVV----TRGVFLGGLMKNY-----KNSIAVSGSHGKSTTTSMISK- 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                 +              + N       I + +A  Y  +    + S+         
Sbjct: 133 -ILMNSTKNPTILLGGDLDEIEGNVHVGDEEILVTEACEYKGNIRYYYPSIGI------- 184

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                         N+  DH+DY++             +         +   ++     +
Sbjct: 185 ------------ILNIDEDHLDYYKDLNDIIETFKSYLKNQDENSKTILNLNEENNKLVI 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                                           +   I  +G    F   + G   + NA 
Sbjct: 233 DSVQGELITYGQENPDADYNATNITFDEDGKPRFDLIMKDGSTEHFELSILGRHNINNAC 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    +  G+D   +   ++    +  R + +G N  G +I +DY H  + +++ L  +
Sbjct: 293 AAIISTLESGVDIETIKNSIQSYKGLERRMQLLG-NIDGCKIILDYGHHPSEIQVNLSAL 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE--DP----EKI 428
              T GR+I V+       + KR +  +       AD  I+TD     E  DP    + I
Sbjct: 352 AEHTKGRLICVW-QPHTYTRTKR-LFNEFVNCFDDADEVIITDIFAAREPFDPSISSKDI 409

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              ++             +     +  + + D ++V G G
Sbjct: 410 VDALVEKGKSAKYLPTFDQVKEYVLSDIKENDQVIVTGSG 449


>gi|197105784|ref|YP_002131161.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
 gi|254766016|sp|B4RFG2|MURC_PHEZH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196479204|gb|ACG78732.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
          Length = 477

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 105/282 (37%), Gaps = 20/282 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+  +H+D++   +A   A  + F E +P    A +  D    + +  R  
Sbjct: 176 LKSTVAVVTNIDPEHLDHYGDFEAVKKA-FQDFVENIPFYGFAAVCLDHPEVQAMTARVE 234

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNA 315
           N       V  Q +      +       + ++ ++ +D  F+       P+ G+  V NA
Sbjct: 235 NRRLVTYGVNPQAEV-RAHNIRMGPEGARFSVVIQPRDGGFISFDDLLLPMAGQHNVQNA 293

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +   +G+    + + L     V  RF   G    G R+  DY H    +  +LK 
Sbjct: 294 LAAIAVARELGVSPDAIRKGLAAFGGVKRRFTTTGVAG-GVRVVDDYGHHPVEIASVLKA 352

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIR--AE 431
            R ++ G++I V      R    R +          AD  IV D     E P +      
Sbjct: 353 ARAVSEGKVIAVV--QPHRYTRLRDLFEDFCACFNDADTVIVADVYAAGEAPIEGVGKES 410

Query: 432 IIHGIPGF---IEKGNRIEAIRTAI--EMLNKQDVLVVAGKG 468
           ++ G+  +           A   A+  E  +  D++V+ G G
Sbjct: 411 LVEGLRRYGHRRVLPLPAPAGLAALVREEAHPGDLVVLLGAG 452


>gi|325124219|gb|ADY83742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 448

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 127/408 (31%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 82  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 110 ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 155 -----IVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+         +    +    
Sbjct: 204 GVKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGTLWLARGLQRLIKSS 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             ++    G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 264 DLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRCEYVKTVHDVRYYN 320

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 321 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFGPLRSSI-EKYAKVVVLI 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+  +      +DV+++
Sbjct: 379 -----GEDAPVIEQAI-QGATKILHAATLKEAVELSQRETQAEDVVLL 420


>gi|229496695|ref|ZP_04390409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316592|gb|EEN82511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 452

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 110/364 (30%), Gaps = 38/364 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR   +    + A+TG++GK++  ++V  I + +G  +   G               
Sbjct: 94  EFASRYLPE-DTKVAAITGSNGKTTTVNWVTHILKTAGYDAAMCGNVG------------ 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  VE SS  LD               N+  DH+D ++ +
Sbjct: 141 -------FSMARLVAEDPHKYYVVEMSSFQLD--GTYKFHPNVSVLLNITPDHLDRYKHK 191

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        + L K    + + +DA+ K+ +++       +           L    
Sbjct: 192 FELYALSKMRITQQLGKGDSFVYWEEDAFIKKYLEQHSMECTLLPFSLQTSGAKALY--E 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLH 340
           +      +        F            +N L A    +     G+ +  + + L    
Sbjct: 250 SDKETLHIEAQHNLSAFSIPKRDLALVGKHNLLNAMASALVAREFGVSNEYLGKALRDFK 309

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VP R E+V        I    A    S    L+           VV   GG        
Sbjct: 310 NVPHRIEYVAEIDGVRYINDSKATNIQSTFYALEA------QTTPVVLILGGTDKGNNYS 363

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +  + L      I         D +K+       I    +  +  E +  A E+    D
Sbjct: 364 EIEDVVLSKCRALIF-----MGIDNDKLHRAFDGKIDQIRDARSMDECLTHAQELAQSGD 418

Query: 461 VLVV 464
           V+++
Sbjct: 419 VVLL 422


>gi|153813506|ref|ZP_01966174.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
 gi|149830377|gb|EDM85469.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
          Length = 459

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 127/405 (31%), Gaps = 53/405 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
              +F+       P+L    TR + L               +AV GT GK++  S +  I
Sbjct: 82  DNPEFACAKEKGIPML----TRAQLLGQIMRNYD-----TSIAVAGTHGKTTTTSMLSHI 132

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G     I     + +   + R+                ++   + +   S      
Sbjct: 133 L-LKGECDPTISVGGILPAIGGNIRVGQSE---------TFLTEACEYTNSFLS------ 176

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                     G   N+  DH+D+ +      ++  R F ELLP E   II AD    + +
Sbjct: 177 -----FFPTIGIILNIDADHLDFFKDIDDIRHS-FRTFAELLPAEGALIINADTPKYEMI 230

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            +                          + +     +            +PG   V NAL
Sbjct: 231 TENLPCKVITYGLEHDAEYTATDITYDELGHATFHVLHNGEDLGTCSLKVPGIHNVSNAL 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            +      + + + ++ + L+       RF++ G       I  DYAH    +E  L   
Sbjct: 291 ASIAAGQLLDLSTEVIFDGLKDFGGTDRRFQYKG-KIGDVTIIDDYAHHPTEIEATLHAA 349

Query: 377 RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---------DPE 426
           +     +I  VF      R +   P   K AL LAD  ++ D     E         + +
Sbjct: 350 KNYPHKKIWCVFQPHTYTRTKALLPEFAK-ALTLADHVVLADIYAARETDNLGISSRNLQ 408

Query: 427 KIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   E+       P F E  N        +E   + D+L+  G G
Sbjct: 409 EKIVELGTPCEYFPTFDEIEN------FLLENCTQGDLLITMGAG 447


>gi|119478635|ref|ZP_01618538.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
 gi|119448412|gb|EAW29663.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
          Length = 477

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 74/464 (15%), Positives = 142/464 (30%), Gaps = 59/464 (12%)

Query: 21  FPMQWRERKINEVSSDSRHIQ-AG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           + +   + ++++V+   R +Q  G  +F+        GH      I+ G + +V S+A  
Sbjct: 44  YQISGSDIQVSKVT---RRLQEKGITVFI--------GHR--ESNIS-GVDVVVCSTAVK 89

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC- 137
             +          I +V    + L+      +G      +AV GT GK++  S +  +  
Sbjct: 90  DDNPEILEAMAHRIPIVPRA-EMLAELMRYRHG------IAVAGTHGKTTTTSLIASVFA 142

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +     +F IG     +        +        ++ +                      
Sbjct: 143 EARLDPTFVIGGLLNSAGTNAQLGESRFLVAEADESDASFLH------------------ 184

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++ +    TN+  DH+  +             F   LP    A++  DD   +E++
Sbjct: 185 ----LQPMVSVVTNIEADHMATYDGDFNKLKKTFVEFLHNLPFYGMAVMCIDDDVVRELL 240

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                A             I       +     V    + K  D    +PG+  V NA  
Sbjct: 241 PAVGRATLTYGFSHDADFSIVDVNKLGLRTSFSVKRPGKHKQIDITINMPGDHNVLNATA 300

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILK 374
           A  +    GID   +   +EK   V  RF+  G             DY H    +E  + 
Sbjct: 301 AIAVATDEGIDDEAIQRGIEKFEGVGRRFQVYGEFDIEEGSVLLVDDYGHHPTEVEATIS 360

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDPEKIRA-- 430
             R     R +V+        + K       ++     D  ++ +     E+P       
Sbjct: 361 AARQAWPDRRLVMVYQPHRYTRTKDLYEDFVRVLST-VDSLLLLEVYSAGEEPIPGADGR 419

Query: 431 -----EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                    G+   I              ++   DV++  G G+
Sbjct: 420 SLSRSIRSRGLIDPIFVEKIESIAEVLKSIVKPGDVVLTQGAGN 463


>gi|260591742|ref|ZP_05857200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
 gi|260536026|gb|EEX18643.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
          Length = 443

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 108/351 (30%), Gaps = 35/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I + +G      G                   + L   
Sbjct: 101 NSKMICITGSNGKTTTTSLIYHIFKDAGYDVGLAGNIGN--------------SLALQV- 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +     +  +E SS  LD   +   +       N+  DH+D +  +   +      
Sbjct: 146 ----AEDPHAYYIIELSSFQLD--NMYNFRANIAILLNITPDHLDRYDFKFENYADAKMR 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +   K+   I + DD     + K         +   +     H         + ++  
Sbjct: 200 IIQNQTKDDSFIYWNDDPV---IKKELKKYDVHAVCYPFSELKEHGSIGYIEEGQYKIEQ 256

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       L G   +YN+L A       GI    + + L     V  R E V   +
Sbjct: 257 PEPFNMEQEDLSLTGRHNIYNSLAAGIASNISGIKKESIRKSLSDFPGVEHRLEKVCKVA 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A   ++    L+++RT       ++   G D+      I   +      + 
Sbjct: 317 GVQYINDSKATNVDACWYALESMRT-----PTILILGGKDKGNDYSAIKDLVKEKCTGLV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN +  D          GIP   +  +  + +    EM    D +++
Sbjct: 372 YLGADNKKLHDNFDSL-----GIP-VRDTHSMKDCVTACAEMAKPGDTVLL 416


>gi|239940572|ref|ZP_04692509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 15998]
 gi|291444007|ref|ZP_06583397.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346954|gb|EFE73858.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
          Length = 472

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 133/408 (32%), Gaps = 48/408 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V +  +          +   + V  +    L+       GK     LAVTGT+GK++ 
Sbjct: 70  LVVTAPGWQPDKPLFLAAAEAGVPVWGDVE--LAWRLRGDNGKKAAPWLAVTGTNGKTTT 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G                     ++   + L       ++VE 
Sbjct: 128 VRMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGETEYDVLAVEL 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +AY  A  +         +     AD
Sbjct: 170 SSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRVYEGNTVACVYNVAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-----FLF 304
            A    V +     GCR +             V       +  ++   K           
Sbjct: 226 PATEDLVREADVEEGCRAIGFTLGAPGPSQLGVVDGILVDRAFVANRQKQAQELAEVTDV 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AA L  A G++ A V + L        R E V        +    A 
Sbjct: 286 DPPAPHNIANALAAAALARAFGVEPAAVRDGLRAFRPDAHRIEHVADIGEVAYVDDSKAT 345

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L +  +      IV    G  +      ++   A  L  + ++        D
Sbjct: 346 NTHATEASLASYDS------IVWIAGGLAKGATFDELVIGAAKRLRGVVLM------GAD 393

Query: 425 PEKIRAEIIHGIPGFIEKG-NR------IEAIRTAIEMLNKQDVLVVA 465
              I   +    P       +R       EA+  A E+    D +++A
Sbjct: 394 RALIHEALTRHAPEVPVVDLDRTDTGAMSEAVARAAELARPGDTVLLA 441


>gi|22536654|ref|NP_687505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae 2603V/R]
 gi|76787986|ref|YP_329209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae A909]
 gi|76798291|ref|ZP_00780538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77405595|ref|ZP_00782685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
 gi|77411435|ref|ZP_00787781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|30316025|sp|Q8E186|MURD_STRA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063264|sp|Q3K2P4|MURD_STRA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22533493|gb|AAM99377.1|AE014213_16 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 2603V/R]
 gi|76563043|gb|ABA45627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae A909]
 gi|76586363|gb|EAO62874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77162521|gb|EAO73486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|77175817|gb|EAO78596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
          Length = 451

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 128/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         ++ +TG++GK++  + + +
Sbjct: 83  PYNNPMVKKALEKQIPVL----TEVELAYLVSE------SQLIGITGSNGKTTTTTMIAE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLNAGGQRGLLAGNIGFPASEVV------------------QAANDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +   +      TNL   H+DYH + + Y  AK  +  ++   +   + +     SKE
Sbjct: 174 -MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQG-ISKE 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K          +           K      +  +++            +PG   V NA
Sbjct: 232 LAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDD--------IGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GI + ++ E L     V  R + +G            +     +    K 
Sbjct: 284 LATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + ++       E   +++      
Sbjct: 341 LSGFDNTKVILI-AGGLDRGNEFDELIPDITG-LKHMVVL------GESASRVKRAAQKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +  +A+  A E+  + DV+++
Sbjct: 393 GVTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|228992648|ref|ZP_04152574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
 gi|228766980|gb|EEM15617.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
          Length = 450

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 133/405 (32%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++  +   ++ +         G   T++                       +++ 
Sbjct: 119 GSNGKTTTTTLTFEMLKEGQKHPVIAGNIGTVACEVV------------------QAAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVETFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADD     +   +        +         +K        +++    +     
Sbjct: 219 YSVI-NADDVDVMALSANSKGQKVLFSTTKVIEDGACIKDGALYFKGEKIVEVQDIV--- 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+++  ++  L++   V  R E+V T +        
Sbjct: 275 ----LPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           +++   G DR      ++        +    I+T   
Sbjct: 331 KATNMLATEKALSAFTQ-----PVILLAGGLDRGNEFDDLI-----PYFEHVKAILTYGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +RA    GI       N  EA+  A       DV+++
Sbjct: 381 TA---PKLVRAAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|317474535|ref|ZP_07933809.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909216|gb|EFV30896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 444

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD   +  +++    G +     +           
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKH---GLKAHPYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI    + + L     V 
Sbjct: 247 VEDGEVEINEPIAFNMEQEELALHGTHNLYNSLAAGISANLAGIKKEDIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVATVRGIQFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIEE 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +       G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVRTKCSALIYLGLHN---EKLHEFFD--RFGLPVADVQTGMKDAVEAAFQLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|291559992|emb|CBL38792.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SSC/2]
          Length = 461

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 124/452 (27%), Gaps = 53/452 (11%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------- 92
           I+ G    +I G+       I     +GA+  +  +A ++ D    +     I       
Sbjct: 30  IKEG---FSISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEE 86

Query: 93  --------LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   + V      L            +N +AV+GT GK++  S +  I   +G + 
Sbjct: 87  YKEAIRRNIPVMKRATLLGQMMHNY-----QNAIAVSGTHGKTTTTSMLSYIL-LAGNTD 140

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             I     + +   + R+               S                          
Sbjct: 141 PTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--------------------P 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+  DH+D+ +      ++      +L       I    +     V        
Sbjct: 181 KISIILNIEEDHMDFFKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYA 240

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              L               A  +                  + GE  V NAL A      
Sbjct: 241 TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKR 300

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGID   + + L        RFE  G       +  DYAH    +   L++ +      +
Sbjct: 301 IGIDVDTMKKGLLGFTGAKRRFELKG-TCNDFTVVDDYAHHPTEIRATLESAKNYPHNEL 359

Query: 385 IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIP 437
             VF      R         K AL L D  IVTD     E        + I   +     
Sbjct: 360 WCVFQPHTYSRTIAFLDDFAK-ALSLCDHVIVTDIYAAREKDTGIVSSKDIVDRMADYDV 418

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                    +  +  ++   K D+L+  G G+
Sbjct: 419 DVHYIKEFDDIEKFILKNCKKNDLLITMGAGN 450


>gi|293375146|ref|ZP_06621434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292646252|gb|EFF64274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 460

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 138/421 (32%), Gaps = 32/421 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQA-GWIFVAIVGNKEDGHLF 59
           MK   L      ++I+             I+ V + ++ +++   +   +     D   F
Sbjct: 1   MK--KLSIGTIRKVIHGS--LVKGNDNLMISSVVTQAKQVESSNTLLFLLNPRTFD-WRF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I + +     AIV               +N  I+ V+  ++    F      +    ++A
Sbjct: 56  IKKYL---PCAIVTDRPI----GHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT GK++     + I +    +   +               T     +L+  +    S
Sbjct: 109 VTGTCGKTTTKDMTRHILKHFYKTEGTVKS-------------TNGESKHLSYLMKLNDS 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                     ++ G  +      K   G  TN+G DH+D  +T + Y  AK  + + +  
Sbjct: 156 VEAAVYETAVAAPGYIKKSSRYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGE 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +  +    D  + + +      G  +     +        +  +       ++V  K 
Sbjct: 216 KGTLIL--NADDDNIKKISLEDFKGKIIYYGVGENSDYQASNIEFVPKGMSYILTVNNKR 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    P  G  QVYN++ A      +GI     ++ L     +   FE +   ++   I 
Sbjct: 274 YKVFIPGYGVHQVYNSMAAIAAAYEVGISYRDSIKLLPSFKHLNSHFEVMKGLNQCQLIV 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLADIAIV 415
             +     SLE  +K +  I   R  +         G   +     +G +        ++
Sbjct: 334 DTWNINPTSLEASIKTMCEIAKNRKKIALVGSIDALGKNSRQLHQKVGDMICQYDLDVLI 393

Query: 416 T 416
           T
Sbjct: 394 T 394


>gi|241205556|ref|YP_002976652.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859446|gb|ACS57113.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 471

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 89/281 (31%), Gaps = 17/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNAL 316
                              ++    +   V I                P+PG   + NA 
Sbjct: 233 RKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVIELKGLVMPMPGRHNISNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI SA + + L     V  RF   G    G +I+ DY H    ++ +L+  
Sbjct: 293 AAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK------I 428
           R    GR+I V      R      +  + A     AD   +       EDP +      +
Sbjct: 352 RESCKGRVIAV--HQPHRFSRLASLFEEFAACFNDADSIFLAPVYAAGEDPIEGIDSVSL 409

Query: 429 RAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            + I  G        N  E + +   E+    D +V+ G G
Sbjct: 410 VSRIKSGGHRDARFINSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|107100001|ref|ZP_01363919.1| hypothetical protein PaerPA_01001022 [Pseudomonas aeruginosa PACS2]
          Length = 448

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 115/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+A+TG++ KS+V + V ++   +       G   T               +
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +     Y  
Sbjct: 150 DLLADDIEL-------YVLELSSFQLET--CDRLNAEVATVLNVSEDHMDRYDGMADYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA ++ ++           S G          +     +
Sbjct: 201 AKHRIFRGARQ----VVVNRADALTRPLIAD----SVPCWSFGLNKPDFKAFGLIEEDGQ 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L+    +  R ++
Sbjct: 253 KWLAFQFDKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+  +V   GGD        + +    
Sbjct: 313 VRERQGVSYYDDSKATNVGAALAAIEGLGADIDGK--LVLLAGGDGKGADFHDLREPVAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 371 FCRAVVL-----LGRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|332706478|ref|ZP_08426539.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya majuscula 3L]
 gi|332354362|gb|EGJ33841.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya majuscula 3L]
          Length = 515

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 129/417 (30%), Gaps = 53/417 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A ++   PI    +    L               +AV GT GK++
Sbjct: 116 VICSTAINPLNSEYQAALKLGCPIFHRSDLLAALIE---------DYYSIAVAGTHGKTT 166

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++G     I     + +   + RL                        + 
Sbjct: 167 TSSLIGYLLWQAGCDPTMI-IGGEVDAIGGNARLGNG--------------------PLL 205

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D++Q  +      + +F+    +    +   
Sbjct: 206 VAEADESDGSLVKLSAEIGVVTNIELDHPDHYQKLE----EVVEIFQTFAKRCKNLVGCI 261

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D    +  +K   +   R              +    +                   L G
Sbjct: 262 DCETVRSQLKPNISYSLRRDMGADYSVDDVTYEA---NGTTARVWEGNQVLGRLELKLLG 318

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL A  +   +G++   +   +        RFE  G          DYAH  + 
Sbjct: 319 KHNLSNALAAVAVARNLGLEFEAIASGIASFEGAKRRFELRG-KCNDISFVDDYAHHPSE 377

Query: 369 LEMILKNIRTITS--GRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE- 423
           ++  L   R   +   RII +F       +  R  P    ++   AD+ +++D     E 
Sbjct: 378 IQATLAAARIQVNADQRIIAIF-QPHRYSRTLRFLPEF-SVSFSNADLVVISDIYSAGEP 435

Query: 424 DPEKIR-----AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           D  +I        I         +      +    ++L   D+ +  G G+    I+
Sbjct: 436 DLGEISGENLYQAIASNHKDVHYQPTLESVVEFLNQILYPGDLALFLGAGNLN-QII 491


>gi|206976740|ref|ZP_03237644.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217961334|ref|YP_002339902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus AH187]
 gi|229140561|ref|ZP_04269116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
 gi|226711882|sp|B7HM33|MURD_BACC7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206745050|gb|EDZ56453.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217063256|gb|ACJ77506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH187]
 gi|228643122|gb|EEK99398.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
          Length = 450

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 125/403 (31%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADDA    +   +        +         +K               E     
Sbjct: 219 YSVI-NADDADVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKGEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNKAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              P+ +RA    G+          EA+  A       DV+++
Sbjct: 383 ---PKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|116073647|ref|ZP_01470909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
 gi|116068952|gb|EAU74704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
          Length = 457

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 83/271 (30%), Gaps = 24/271 (8%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A           + +TGT+GK++V   +Q +   +GL +   G           
Sbjct: 93  AVCGEMAVAWDALSHRPWIGITGTNGKTTVTHLLQHVLSHAGLQAPMAGNVGH------- 145

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                 S   LA A S         + +E SS+ ++      +    G +T L  DH++ 
Sbjct: 146 ------SAAELALACSSGHLPQPDWIVMEMSSYQIEA--AQQVAPRIGIWTTLTPDHLER 197

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T      A   +   LL +   A++ ADD        +   A     S          
Sbjct: 198 HGTLD----AYRAIKHGLLARSEQAVLNADDPDLCRHHHQWPAATWVSTSPTPPVPCTLW 253

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                    ++  +           PLPG     N L+     +  G+  + +   L   
Sbjct: 254 IDPEQWVCSREQRLFP-----ADALPLPGNHNRQNMLLVTAAALHAGLPPSAIEAALRCF 308

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
             VP R E +G            A   ++  
Sbjct: 309 SGVPHRLEPLGLVKGMRVYNDSKATNYDAAA 339


>gi|78187954|ref|YP_375997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium luteolum
           DSM 273]
 gi|122063253|sp|Q3B127|MURD_PELLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78167856|gb|ABB24954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           luteolum DSM 273]
          Length = 460

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 124/395 (31%), Gaps = 39/395 (9%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTGTSGKSSVAS 131
                  S  +    P++     R+         AS         I  +TGT GK++ A+
Sbjct: 68  DADFAVVSPGVPPGVPVIRELERRQIPVHSEIELASWFCR---ARIAGITGTDGKTTTAT 124

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            VQ++ +  G             ++   N       I +  +      +      VE SS
Sbjct: 125 LVQRMAEAVGR-------LGGYRAYGVGN-------IGVPFSSKVEEMEERDIAVVELSS 170

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           + L+  R    +  A   TN+  DH+D +      +          L      +  ADD 
Sbjct: 171 YQLE--RCSSFRPEAALITNITPDHLDRYGGDIMRYADAKYRIAMNLGSSGTLVYNADDP 228

Query: 252 YSKEVMKRA--HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
             +          +     + G  G                    +            G 
Sbjct: 229 ILRARFSVGGLQFSTVPFSTAGPVGGDPSSGIYLEDGWVHAGLRRLIHTSEFQKGSFRGN 288

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A GL  A+ +D   VL+ L +   V  R EFV +      I    A   N++
Sbjct: 289 HNNSNVLGAIGLARALRLDEKAVLQALREFPGVEHRQEFVASKRGSDWINDSKATNVNAM 348

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADIAIVTDDNPRSEDPEKI 428
              L+ +     GRI+++    G RD+G     +  +  + AD+ +        E  +K+
Sbjct: 349 RQALEAV----PGRIVLI---AGGRDKGNDYSAVATLVREKADLVV-----AMGESRQKV 396

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                  +   +E     +A+R A         ++
Sbjct: 397 ADAFRADVA-VVEAATLEDAVRLAAGGAGTGRTVL 430


>gi|255102401|ref|ZP_05331378.1| putative folylpolyglutamate synthase [Clostridium difficile
           QCD-63q42]
          Length = 432

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVF 388
              +         PGR E +          +D AH  +  + + K + +     ++ ++ 
Sbjct: 285 EESIRKGLINTKWPGRIEKIKE---NPIFIIDGAHNEDGAKSLAKALDKNFKGRKLTLLI 341

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           G   D+D      + +I L   +  I T  N PR+ + + +R +++  +     K    +
Sbjct: 342 GMLEDKDID---SVLEILLSHFNKVITTTPNNPRAINSDILREKVLKYVDDVTSKHEIED 398

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A+   +E  ++ D+++ AG
Sbjct: 399 AVNYTLETSSEDDIIISAG 417


>gi|15599610|ref|NP_253104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAO1]
 gi|152985250|ref|YP_001350322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PA7]
 gi|254238923|ref|ZP_04932246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|254244775|ref|ZP_04938097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|296391123|ref|ZP_06880598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAb1]
 gi|30316126|sp|Q9HVZ9|MURD_PSEAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|9950646|gb|AAG07802.1|AE004856_13 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126170854|gb|EAZ56365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|126198153|gb|EAZ62216.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|150960408|gb|ABR82433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PA7]
          Length = 448

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 115/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+A+TG++ KS+V + V ++   +       G   T               +
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +     Y  
Sbjct: 150 DLLADDIEL-------YVLELSSFQLET--CDRLNAEVATVLNVSEDHMDRYDGMADYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA ++ ++           S G          +     +
Sbjct: 201 AKHRIFRGARQ----VVVNRADALTRPLIADT----VPCWSFGLNKPDFKAFGLIEEDGQ 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L+    +  R ++
Sbjct: 253 KWLAFQFDKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+  +V   GGD        + +    
Sbjct: 313 VRERQGVSYYDDSKATNVGAALAAIEGLGADIDGK--LVLLAGGDGKGADFHDLREPVAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 371 FCRAVVL-----LGRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|322383208|ref|ZP_08057019.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152477|gb|EFX45263.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 462

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 131/414 (31%), Gaps = 45/414 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +V S+A    +         N PIL          + A  +  +     +AV G  
Sbjct: 64  GADLVVYSTALPKDNVEIVAAEARNIPILHRS------QMLARLMNER---KGIAVAGAH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++ +S +  + ++ G     I     I +   + +  T   +      S  +      
Sbjct: 115 GKTTTSSMIALVMEKCGADPTYI-IGGEIMNIGSNAKAGTGEYVVAEADESDGTFLQYY- 172

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     N+  DH++ +             F   +     A
Sbjct: 173 -------------------PTLALVNNIEADHLENYGGNFENLKKAYAQFLSQVKPGGKA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  DDAY +E++     +      +G    +  +             +           
Sbjct: 214 IVCKDDAYIREMIP-YVESEVITYGIGSDADYQAVDIHLGDRKVSFSVLYKGENLGKIEL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  V NAL    +C+  G+    V   + + H    RF+ +G       I  DYAH
Sbjct: 273 SVPGKHNVCNALATLIICLEAGLTFDQVAAAIHEFHGAKRRFQVMG-EINDILIIDDYAH 331

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPRS 422
               +   +   +  T  RIIVVF      R         +   + AD  I+TD  +P  
Sbjct: 332 HPTEISATISAAKA-TGKRIIVVFQPQRYTRTFFLFEQFSRCFGE-ADEVIITDIYSPAG 389

Query: 423 E------DPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E         K+   I               + +   I+ +   D+++  G G+
Sbjct: 390 EKQIEGVSSAKLVDMIRQNSHANAEYMPKSEDVLAHLIDHVKPGDLVITMGAGN 443


>gi|294793905|ref|ZP_06759042.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
 gi|294455475|gb|EFG23847.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
          Length = 460

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 125/430 (29%), Gaps = 49/430 (11%)

Query: 51  GNKED-GHL--FIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++      G +AIV S+A      +  A       IL   +  K +   
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     + +AV G  GK+S  S + QI   +                     +   
Sbjct: 105 ---------TDGIAVAGAHGKTSTTSMIGQILVEANADPTV---------------IIGG 140

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              YL  +            + E+    L  H            TN+  DH+D+++T   
Sbjct: 141 EVDYLKGSSCLGKGHFSVVEADESDGSFLKLH------PHTIVITNIEDDHMDHYKTMDN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP+   AI+  D+   + VM R                          
Sbjct: 195 LLNA-FCEFVETLPEAGKAIVCGDNENIRYVMSRVKRTFITYGLEDNNDYVAK-NIHYVD 252

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +                  +PGE  V N+L A  +           +       +   R
Sbjct: 253 SSLVYDVYHKGINIGRISLCVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGAKR 312

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                 +  G  +  DYAH    ++  L+  + +   R+I VF                 
Sbjct: 313 RFETKGHVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDEFAT 372

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNK 458
           A   AD   +TD     EDP        I   +       +    +  +      +++  
Sbjct: 373 AFTSADEIYMTDIYSSGEDPIAGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKIVRP 432

Query: 459 QDVLVVAGKG 468
            D+++  G G
Sbjct: 433 NDLVITMGAG 442


>gi|256832304|ref|YP_003161031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685835|gb|ACV08728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
          Length = 502

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 133/428 (31%), Gaps = 65/428 (15%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++ S  +     + T  ++  + V         L  +  +   P   LAVTGT+GK++ 
Sbjct: 73  LVIASPGWPPHHEALTAAADHAVPVWSEIELAWQLRVNNEHTNKPAPWLAVTGTNGKTTT 132

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I    GL    +G                      A  +  + +  +    +E 
Sbjct: 133 VELLATILHADGLRVATVGNVG-------------------APVIRQIQNPTIDVFVLEL 173

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L  H    ++ +A +  N+  DH+D+H +   Y  A  +         +      D
Sbjct: 174 SSFQL--HFTYSMEPLASAILNIAEDHVDWHGSFDQY--ASDKARIFTHTHRACVYSEGD 229

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP---- 305
           D   + + +   + G R +SV  +        +       +           +       
Sbjct: 230 DRVVRLLHEADVHPGARAISVSAESPTPSSLGIVDGVLCDRAFTEPLTGPQRYRHAAELA 289

Query: 306 -------------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        + G   + N L AA L  A G+    V + ++       R E V T 
Sbjct: 290 QLSDLAHLAGPDGVVGSHTITNTLFAAALARAYGVAPRAVRDGVKSFQPGRHRIEHVATV 349

Query: 353 SRGG-------RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           ++          I    A  +++    L ++   ++    V    G  +      ++ +I
Sbjct: 350 AKNDAPQSGVTFINDSKATNAHAARASLLSLPLSST----VWIVGGVTKGANLDSLIAEI 405

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGN----RIEAIRTAIEMLN 457
              L    ++        + ++I        P          +       A+ TA +   
Sbjct: 406 GPQLRSAVVI------GVEHQEIVRAFARHAPHIPVHVASADDTGGVMRHAVNTAWKAAE 459

Query: 458 KQDVLVVA 465
             DV+++A
Sbjct: 460 PGDVVILA 467


>gi|153940305|ref|YP_001392870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum F str. Langeland]
 gi|166224760|sp|A7GJB0|MURD_CLOBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152936201|gb|ABS41699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum F str. Langeland]
          Length = 458

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 116/360 (32%), Gaps = 47/360 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++ G  ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD  ++              ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNNLLVLNKDDDLTNEM----------ENEALGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+                 L+AA   +   +    +         V  R E
Sbjct: 260 SNNKLTIQGKEVCDSKDINLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       + +++   G D+     P+    A 
Sbjct: 320 FIREVNGVKYYNDSIASSPSRTLAGLNSFE-----KPVILIAGGYDKKIPFEPL----AE 370

Query: 408 DLADIA---IVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              D     I+  D  N      EK+ +         +   +  EA++ A  +  K D++
Sbjct: 371 GGYDKIKILILMGDTKNKIKSAFEKVISH-KKCEMEIVIVNSMEEAVKVADNIAEKGDII 429


>gi|281413643|ref|ZP_06245385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 475

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 137/418 (32%), Gaps = 51/418 (12%)

Query: 67  GAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA A  +V S  +                +  +    L+       G+   + + +TGT+
Sbjct: 47  GAAADLVVTSPGWRPDQPLLMAAHAAGRPIWSDVE--LAWRLRERAGRKTADWVCLTGTN 104

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V+ I +  G  +   G   T                      +    QG   
Sbjct: 105 GKTTTVTMVEAILRADGRRAVACGNVGTP------------------VLDAIRDPQGFDV 146

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +++E SS  L      G+   + +  NL  DH+D+H + + Y  AK +++          
Sbjct: 147 LALELSSFQLHW--THGLAPASSAVLNLAEDHVDWHGSMEEYAAAKGKVYANTRVACVF- 203

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                D  ++ +++RA        ++G+      L  +  +         ++ +  + + 
Sbjct: 204 --NEQDPLTRTLVERADVQEG-CRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEAIA 260

Query: 305 --------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P+     + NA  AA L  A+G+  A V E L        R + V T+    
Sbjct: 261 LAERADLGPVAPRHTMANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRDIM 320

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +    A   ++ +  L    +      +V    G  +      ++   A  L  + ++ 
Sbjct: 321 WVNDSKATNPHAADASLAAFSS------VVWLAGGLPKGVTYHELVAAHAHRLRAVVLLG 374

Query: 417 DDNPRS---------EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D             + P         G           EA+R A  +    D +++A
Sbjct: 375 RDTSALRAALAAHAPDVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVLMA 432


>gi|226323768|ref|ZP_03799286.1| hypothetical protein COPCOM_01543 [Coprococcus comes ATCC 27758]
 gi|225207952|gb|EEG90306.1| hypothetical protein COPCOM_01543 [Coprococcus comes ATCC 27758]
          Length = 441

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 120/409 (29%), Gaps = 48/409 (11%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L +D+ +  L    +    +     + + GT+GK S+ + +  I Q++G  + +    +
Sbjct: 19  VLGLDSIKSLLGELGN---PQKDLKFIHIAGTNGKGSILAGLSGILQQAGYRTGRYCSPT 75

Query: 152 TISSFAQDNRLT------------------------------TPSPIYLAKALSYLSSQG 181
            +    +    +                              T   I  A A  Y   + 
Sbjct: 76  VMGYMERFQVDSQWMAEDELAPFVSQVKEAAEKVEEKTDLTVTVFEIETAIAFLYFREKQ 135

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             +V +EA   GL     + I     S                    A+ +         
Sbjct: 136 CDYVVLEAGMGGL-LDATNVIDTTVLSIFASISMDHIGVLGNTLEEIAENKAGIIKPSCL 194

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +        + +  + K+A   GCR +    +     +     +  +       +     
Sbjct: 195 AVVTSPQQMSVTDILQKKAGECGCRFVVSHPEK---AVISEETMDGQIFSYGEYKDIRLR 251

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                  +           L           +         PGRF+ +        +  D
Sbjct: 252 LAGRYQIDNAATVLEAVDALRRNGVSIPEDAVRKGFVKVTWPGRFQVLEKEPT---VIAD 308

Query: 362 YAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
            AH  ++   + +N+RT  + R IV V G   D++      + +I          T D P
Sbjct: 309 GAHNRDAARRLAENVRTYLTDRKIVGVMGVFKDKEYE---QIAEIMAPYLSKVY-TIDLP 364

Query: 421 RSED---PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             E     E++   +           N  +A+  A     K+DV++V G
Sbjct: 365 NGERNLGKERLCEVLKAKNIQSEPAENIADALEKAKAECGKEDVVLVFG 413


>gi|260430914|ref|ZP_05784885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414742|gb|EEX08001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 464

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 130/416 (31%), Gaps = 52/416 (12%)

Query: 62  QAIAQGAEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PEN 116
           +A    A  IV   +   Y   +       +  + V ++   +   FA   +  +  P  
Sbjct: 62  EAFDDIASLIVSPGIPHLYPEPNPVVAAALDAGVPVDNDIGLYFRSFAGPEWNNYDTPPR 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           ++AVTG++GKS+ A+ +  I   +G  +   G               +   + L      
Sbjct: 122 VIAVTGSNGKSTTAALIHHILTEAGREAQLAGNIGRGVLDIDPGGDGSVVVLEL------ 175

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                        SS+  +  R   +      FTNL  DH+D H     YF AK RLF E
Sbjct: 176 -------------SSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSE 220

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
             P  +       D      +      G     V        L         ++  +S  
Sbjct: 221 GGPDRAVI---GVDEIEGAFLAGQLAEGAGDDRVIRVSVARKLAGPGWQVFARKGFLSEY 277

Query: 297 GK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            K       D   +  LPG     NA  A   C A+G+   ++ + L     +P R + +
Sbjct: 278 RKGRQAASIDLRDIKGLPGTHNHQNACSAYAACRALGLAPKMIEDALHSYPGLPHRSQVI 337

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +    +    A   +S    L   + I   R I     G +++ G   +       L
Sbjct: 338 AEANGVTFVNDSKATNVDSAVKALGAFKKI---RWIC---GGLEKEGGIAALNDATDEVL 391

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               I         +      ++              EA+  A+      + +++A
Sbjct: 392 CAYVI-------GREAAAFAMQLSV---ETRVCTTMAEAVEQAMRDAAPGETVLLA 437


>gi|120612620|ref|YP_972298.1| cyanophycin synthetase [Acidovorax citrulli AAC00-1]
 gi|120591084|gb|ABM34524.1| cyanophycin synthetase [Acidovorax citrulli AAC00-1]
          Length = 861

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 71/236 (30%), Gaps = 13/236 (5%)

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A +               +            + +++     +  +      +  +D 
Sbjct: 605 PHVAAMAPSSPGKVIFFALDRHHPVMATHRAQGQRVVYVDGEHIVAAEDSWREQIALRDI 664

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGG 356
                    FQV NA+ A      +G+    +   L          PGRF     + RG 
Sbjct: 665 PLTRNGTIGFQVENAMAAIAAAWGVGLPWDTIRRGLAGFMNDSDNAPGRFNV--MDFRGA 722

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DY H  +++  +++ +  + + R  VV    GDR         +I     D  I+ 
Sbjct: 723 TVIADYGHNPDAMRALVQAVGAMPARRRSVVISGAGDRRDEDIRGQTEILGAAFDDVILY 782

Query: 417 DDNP-RSE---DPEKIRAEIIHGIPGFIEKGNRI---EAIRTAIEMLNKQDVLVVA 465
            D   R     +   +  E + G               AI  A+  L   D+ +V 
Sbjct: 783 QDAAQRGRADGEVMALLREGLAGASRTKYIDEIRGEFAAIDAALGRLEPGDLCLVL 838


>gi|284044107|ref|YP_003394447.1| FolC bifunctional protein [Conexibacter woesei DSM 14684]
 gi|283948328|gb|ADB51072.1| FolC bifunctional protein [Conexibacter woesei DSM 14684]
          Length = 422

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKR 399
           +VPGR +  G         +D AH    +E I +++  +T+GR  + V     D+D    
Sbjct: 280 MVPGRMQVAGHEPL---TVLDGAHNPAGIEAIAESLPQLTAGRRLVAVVSVLDDKDA--- 333

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLN 457
             M +  L   +  + T + +PR+  P  + +       P    + +   A+  A E+  
Sbjct: 334 AAMLRALLPHCEHVVFTRNHSPRALPPATLASLASQLDGPPSELETDPRRALARARELAG 393

Query: 458 KQDVLVVAG 466
              V++  G
Sbjct: 394 AGGVVLATG 402


>gi|269836658|ref|YP_003318886.1| FolC bifunctional protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785921|gb|ACZ38064.1| FolC bifunctional protein [Sphaerobacter thermophilus DSM 20745]
          Length = 482

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400
            PGR E V    R   + +D AH    +  + +N+  +    R IVVFG     D     
Sbjct: 317 FPGRMEVVQERPR---VVLDGAHNPAKMASLTRNLDRLGRPRRRIVVFGSLDSHDYL--- 370

Query: 401 IMGKIALDLADIAIVTDDNP---RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
            M  +  + AD  IVT        + D   +   I+             +AI  A+E   
Sbjct: 371 TMANLVAEAADEVIVTTPMATQRAAADARVLADAIMAAGRPAEVVAEPRDAIVAALERAT 430

Query: 458 KQDVLVVAG 466
             D +V  G
Sbjct: 431 PDDEIVATG 439


>gi|269798173|ref|YP_003312073.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282850402|ref|ZP_06259781.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
 gi|269094802|gb|ACZ24793.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282579895|gb|EFB85299.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
          Length = 460

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 125/430 (29%), Gaps = 49/430 (11%)

Query: 51  GNKED-GHL--FIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLF 105
           G     GH   ++      G +AIV S+A      +  A       IL   +  K +   
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     + +AV G  GK+S  S + QI   +                     +   
Sbjct: 105 ---------TDGIAVAGAHGKTSTTSMIGQILVEANADPTV---------------IIGG 140

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
              YL  +            + E+    L  H            TN+  DH+D+++T   
Sbjct: 141 EVDYLKGSSCLGKGHFSVVEADESDGSFLKLH------PHTIVITNIEDDHMDHYKTMDN 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             NA    F E LP+   AI+  D+   + VM R                          
Sbjct: 195 LLNA-FCEFVETLPEAGKAIVCGDNENIRYVMSRVKRTFITYGLEDNNDYVAK-NIHYVD 252

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +                  +PGE  V N+L A  +           +       +   R
Sbjct: 253 SSLVYDVYHKGINISRISLRVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGAKR 312

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                 +  G  +  DYAH    ++  L+  + +   R+I VF                 
Sbjct: 313 RFETKGHVAGVWVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDEFAT 372

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNK 458
           A   AD   +TD     EDP        I   +       +    +  +      +++  
Sbjct: 373 AFTSADEIYMTDIYSSGEDPIAGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKIVRP 432

Query: 459 QDVLVVAGKG 468
            D+++  G G
Sbjct: 433 NDLVITMGAG 442


>gi|3122406|sp|O07669|MURD_ENTHR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2222673|emb|CAA74234.1| murD [Enterococcus hirae]
          Length = 460

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 98/278 (35%), Gaps = 20/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TN+   HIDYH+T++ Y  AK  L + +  K+   + 
Sbjct: 172 MELSSFQL--MGITDFRPHVAVVTNIYEAHIDYHKTRKEYVKAKWHLQQNMTEKDYLILN 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +  +   +   K                    L      + ++ + I+           +
Sbjct: 230 WNQEELRELSKKTKATVLPFATEQKLPKGACSLDGSIYYNQEKIMDIT--------ELGV 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  +    GI +  +   L   H VP R ++VG            A   
Sbjct: 282 PGSHNVENALAAISVAKLYGISNEAIKNALHHFHGVPHRTQYVGEFQGRKFYNDSKATNI 341

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + +M L   +       +V+   G DR      ++  +    A +    +   R ED  
Sbjct: 342 LATKMALSGFQL----DQLVLIAGGLDRGNSFDELIPALKGIKA-LITFGETQNRLEDAG 396

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K       GIP      N   A+  A+E+  + D +++
Sbjct: 397 K-----KAGIPVIKTAENAEAAVPIALELSEEGDSILL 429


>gi|322436304|ref|YP_004218516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164031|gb|ADW69736.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
          Length = 451

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 120/362 (33%), Gaps = 37/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             ASR       +++A+TG++GK++  +   +I   + L +   G               
Sbjct: 100 ELASRFLD---GSVIAITGSNGKTTTTTLTGKIFADAALPTLVGGNIGLPVIDLIAESR- 155

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                              T   +E SS  L+       K       N+  DH+D H+T 
Sbjct: 156 -----------------PETWSVLEVSSFQLETATTF--KPRIAMVLNVTPDHLDRHKTF 196

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y+ AK R+       E   I+ A+D  ++++  +               +   +    
Sbjct: 197 ERYWEAKARITAC-QESEDFLILNAEDVNAQKMAAKTRAQIYWFSGRRQVKQGAFVHGES 255

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                ++     E         L G   V N L A       GID+  +   ++    V 
Sbjct: 256 VFFLGKEGG-KPEPVLPVSEIALKGAHNVENVLAAVCAARLAGIDAETIRAAVKGFRAVE 314

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +         A   +     +K + +   G  +++    G +D+       
Sbjct: 315 HRLELVRVRNGVEFYNDSKATNVD---ATVKAVESFAGGIHLIL----GGKDKDSDYATL 367

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              L      + T         EKI  + + G+   ++ G   +A++ A E     ++++
Sbjct: 368 SALLKERVRVVYTI----GSAAEKIERQ-LDGVVKIVQAGTLDKAVKLAAEAAVSDEIVL 422

Query: 464 VA 465
           +A
Sbjct: 423 LA 424


>gi|294506459|ref|YP_003570517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           M8]
 gi|294342787|emb|CBH23565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           M8]
          Length = 481

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 134/430 (31%), Gaps = 62/430 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQ---DFSATIRSNTPIL---------VVDNTRKF----LSL 104
             A + GA A +  +    +     +  + ++  +L         +V    +      S 
Sbjct: 60  QDAPSDGAAAALDEAGVEYEFGGHTAEALNADVLVLSPGVPTQSNIVQQALRAGLDVYSE 119

Query: 105 F--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQR--SGLSSFQIGPTSTISSFAQDN 160
              AS         I    G +  +S+   V +       G  +   G            
Sbjct: 120 IEAASWFCDAPIVAITGTNGKTTTTSLTGHVFRTAFADTPGREAIVAGNIGYP------- 172

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDY 219
                       +   L ++    V +E SS  LD   ++  +       N+  DH   Y
Sbjct: 173 -----------FSDYVLETEPTDVVVLEVSSFQLD--HVETFRPRVSVLLNITPDHLGRY 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
               +AY  AK  +F      +       DD     V + A   G R +++  +G     
Sbjct: 220 DHDFEAYAQAKHNIFRNQGEGDVVVYNRDDDDVRDAVEEAAAEQGVRPMAITREGVPAAG 279

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                     +     +         L G   +YN+L AA     + +++ ++ E L   
Sbjct: 280 AGFRDGRIVLRTDDEDDSLMPQDELALRGRHNMYNSLAAAVSARVMEVENDVIRESLSGF 339

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VP R E V T      +    A   N++   L++       R IV+    G RD+G  
Sbjct: 340 EGVPHRLEEVRTVDDVLYVNDSKATNVNAVWYALESFD-----RPIVLIA--GGRDKG-- 390

Query: 400 PIMGKIALDLADIAIVTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                   D  D+  +  D  R      E  EK+  E+    P         +A+  A  
Sbjct: 391 -------NDYTDLKPLVRDQVRAVVALGESTEKVERELGGEAPDHSRAATMEDALTQAQR 443

Query: 455 MLNKQDVLVV 464
                DV+++
Sbjct: 444 AAQPGDVVLL 453


>gi|56476226|ref|YP_157815.1| UDP-N-acetylmuramate--L-alanine ligase [Aromatoleum aromaticum
           EbN1]
 gi|81358257|sp|Q5P6Z7|MURC_AZOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56312269|emb|CAI06914.1| UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)
           (UDP-N-acetylmuramoyl-L-alanine synthetase), gene: MURC
           OR RSC2843 OR RS00262 [Aromatoleum aromaticum EbN1]
          Length = 471

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 138/436 (31%), Gaps = 59/436 (13%)

Query: 56  GHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH     A     GA+A+V+S+A    +       +  + +V    + L+      +G  
Sbjct: 56  GH-----AAENVAGADAVVISTAVRNDNPEVVAARSRHVPIVPRA-QMLAELMRLKHG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  S V  I    G+    +     +++   + RL     +     
Sbjct: 108 ----IAIAGTHGKTTTTSLVASILAEGGMDPTFV-IGGKLNAAGANARLGKGDFLVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLL--------------------LTPVISVITNIDADHMDTYGHDFARLKQAFVD 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD + + +M        R      +   I  + V A   +    +
Sbjct: 203 FLQHLPFYGVAVLCEDDPHVRSIMPLVSKQVVRYGL--SESANIRAENVRAEGGRMLFDV 260

Query: 294 SVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          LPG   V NAL A  +   + +  A +++ L +   V  RF+  G
Sbjct: 261 VRTNGSVSRLPIELNLPGVHNVLNALAAIAVATEVQVPDAAIIKALAEFRGVGRRFQRYG 320

Query: 351 ---------TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
                    T      +  DY H    +   L   R    GR  +V      R    R  
Sbjct: 321 EVALRDAEGTPQGSCTLIDDYGHHPVEMAATLAAARGAFPGRR-LVLAFQPHRYTRTRDC 379

Query: 402 MGKIALDLA--DIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTA 452
                  L+  D  ++ +     E P        +   I   G    +   +  E   T 
Sbjct: 380 FEDFVKVLSTVDALLLAEVYAAGEAPVVAADGRSLARAIRVAGKVEPVFVEDIDEMPATV 439

Query: 453 IEMLNKQDVLVVAGKG 468
           +  +   DV++  G G
Sbjct: 440 LAAVRDGDVVITMGAG 455


>gi|310765303|gb|ADP10253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Erwinia sp. Ejp617]
          Length = 450

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 103/360 (28%), Gaps = 38/360 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++AV GT GK++ A     I Q  G    F IG        + +   +    I   +
Sbjct: 102 DRWVIAVAGTHGKTTTAGMTAWILQACGYEPGFVIGGVPGNFEVSANLGKSPFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D +   +A       
Sbjct: 162 YDCAFFDKRAKFV---------------HYCPRTLILNNLEFDHADIYDDLRAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+  + GC               K  +        
Sbjct: 202 KQFHHLVRIVPGQGKIILPEHDANLKQMMSMGCWSEHEAVGENSCWQVKKLSPDASCWEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +  + L GE  + N ++A      +G+        L        R E  G  
Sbjct: 262 MLDGERVAEVKWSLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------K 404
           S G ++Y D+AH   ++   L  +R    G  RI+ V        +     MG       
Sbjct: 321 SNGIKVYDDFAHHPTAIHATLAALRGKVGGTARILAVLEP-----RSNTMKMGISKDDLA 375

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AL  AD   +   +       ++    I       +    +EAI       +  D ++V
Sbjct: 376 PALGRADEVFLYQPHHIPWQVSEVADACIQPAHWSADIDTLVEAIAKV---AHPGDTILV 432


>gi|261363719|ref|ZP_05976602.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria mucosa
           ATCC 25996]
 gi|288568285|gb|EFC89845.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria mucosa
           ATCC 25996]
          Length = 424

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 123/392 (31%), Gaps = 35/392 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                R+  +    ++ V GT+GK SV +++ QI +++G     +     +    +    
Sbjct: 28  GEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNERIAVN 87

Query: 163 TTPSPIYLAKALSYLS---------SQGVTHVSVEASSHGLDQHRLDGIKLI---AGSFT 210
             P    L  A              +    +          +Q  +  +++         
Sbjct: 88  AEPVSDDLITASFERIEAARGEISLTYFEFNALAAVDIFIREQVDVMILEVGLGGRLDAV 147

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-------PAIIYADDAYSKEVMKRAHNA 263
           N+         +      A +    E +  E           I   +   + ++  A   
Sbjct: 148 NVFDCDCAVVTSVDLDHQAFLGDTVEQVGFEKAGVFRSGKPAICGQNPAPESLVAHAEAI 207

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G ++L V     F  L+ +   + +     S +        P P     Y    AA    
Sbjct: 208 GAKLLMVQRDFDFSSLENIQ-WNYRFHPQHSDDPARNRNSLPFPALRGAYQLSNAACALT 266

Query: 324 AIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            +   +  +   +        L   PGRF+ +          +D  H  ++   + +++ 
Sbjct: 267 VLECLNEKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRRSLI 323

Query: 378 TITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH- 434
            +    +   VF    D+D      + +I  D  D   +   D PR    E ++A++   
Sbjct: 324 NLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTAEALQAKLEAQ 380

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I       +  EA R A+    + D +VV G
Sbjct: 381 NIENIQTFTSVREAYRAALAKAGENDRIVVFG 412


>gi|188585928|ref|YP_001917473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226722938|sp|B2A2H0|MURD_NATTJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|179350615|gb|ACB84885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 461

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 127/390 (32%), Gaps = 39/390 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                  +       P++   +  +      +    K  E ++AVTGT+GK++  + + +
Sbjct: 80  PMDNNIITKAKELGMPVI---DELELGYQILNYRLTKPEERLIAVTGTNGKTTTTNLIGE 136

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
             + SG S +  G                     L  +           + +E SS  L+
Sbjct: 137 FFEASGYSIYVAGNVG------------------LPLSQIACEVTDTDFIVLEVSSFQLE 178

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              + G +       N+  DH+D+H    +Y  AKM +F+    K+   +   DD  +  
Sbjct: 179 --FIKGFRPKVSMILNITPDHLDWHGDLDSYIRAKMNIFKNQTSKDFSVV-NVDDETTFG 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + + +            + +   ++    + N      S+  K       LPGE  + N 
Sbjct: 236 LNRESKGRKLNFSKNSLRTEGSFIEDDHLVINYLDTKTSIIHK---HDILLPGEHNLENV 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A    +   I    +   L+    V  R E V   +    I         +      +
Sbjct: 293 LAATTATLPFSISEENIRNTLKAFSGVDHRLELVRELNGVKFINDSKGTNVEA------S 346

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH- 434
           ++ I S   +++   G D+          I         +       E  +KI + +   
Sbjct: 347 LKAINSFDSMILIAGGKDKGADFSEFAEAIKEKGVKKVYL-----FGETYKKIASALDKV 401

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             P +    N   A+  A +     DV+++
Sbjct: 402 YYPEYYIVNNLETAVTGAYQDAISGDVVLL 431


>gi|303231404|ref|ZP_07318138.1| putative tetrahydrofolate synthase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514000|gb|EFL56008.1| putative tetrahydrofolate synthase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 435

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 53/160 (33%), Gaps = 14/160 (8%)

Query: 314 NALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            AL A  L +          +          GRFE   T         D AH +   E  
Sbjct: 265 CALQAVRLVMEHDDAISEETMREGFARATWAGRFEIKKTL--DRTFIFDGAHNAAGAESF 322

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG--KIALDLADIAI-VTDDNPRSEDPEKI 428
                         +V     D+D      MG  +  +   D  I V    PR+E PEK+
Sbjct: 323 GMTYHELFGDTPKTMVMAILSDKD-----EMGIIREVVKPKDTVIAVAAPTPRTEVPEKL 377

Query: 429 RAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +   + G +   + +   A+  A++     D++VV G
Sbjct: 378 VETVRQCVKGVVAQTEDSVSSALDLALQSTQDGDIIVVCG 417


>gi|255262234|ref|ZP_05341576.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
 gi|255104569|gb|EET47243.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
          Length = 466

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 127/414 (30%), Gaps = 45/414 (10%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GAE IV+SSA      ++ A      PI+        L            ++ +AV GT 
Sbjct: 71  GAEVIVISSAIKPGNAEYDAARAKGLPIVRRAEMLAELMRL---------KSNVAVAGTH 121

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G+    I     I ++  + R+                      
Sbjct: 122 GKTTTTTMVSALLDAGGIDPTVI-NGGIIHAYGSNARVGQGD-----------------W 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++  +        +     +       
Sbjct: 164 MVVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGSFDNLRQGFLDFVSNIPFYGLAV 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FL 303
                      V K                                + +  E +  +  +
Sbjct: 221 CCTDHPEVQALVGKITDRRVVTYGFNAQVDVRAINLSYKDGSAYFDIQLQSEDQVIEGCM 280

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ S  +   LE    V  RF  VG    G  I  DYA
Sbjct: 281 LPMPGDHNVSNALAAVAVSRHLGMKSEEIKTALENFGGVNRRFTRVG-KVNGVTIIDDYA 339

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    +   LK  R    GR+I V      R      +          AD+A + +    
Sbjct: 340 HHPVEIAAALKAARQACDGRVIAV--HQPHRYSRLHDLFDDFCGCFNDADVAAIAEVFAA 397

Query: 422 SEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            EDP +       +   I  G           +  R   E     D++V  G G
Sbjct: 398 GEDPIEGASRDDLVAGMIRSGHRHARSILGEEDLERLVREQTKPGDMVVCLGAG 451


>gi|300721516|ref|YP_003710791.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297628008|emb|CBJ88557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 456

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 112/373 (30%), Gaps = 43/373 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ A  +  + +  G    F IG      + +     +    I   
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWVLEACGYKPGFLIGGVPGNFAVSAQIGESPFFVIEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D  +       A +
Sbjct: 161 EYDSAFFDKRSKFV---------------HYSPRTLIMNNLEFDHADIFENL-----ASI 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     L +  P+        +   +K   + GC               K  +  +    
Sbjct: 201 QKQFHHLVRVVPSTGKIIVPDNDINLKHVLSMGCWSEQEQLGDGGSWQAKKLSQDSSNYQ 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    +  + L GE  ++N L+A      IGI  A   + L +      R E  G 
Sbjct: 261 VFHHGEWVGEVNWSLVGEHNMHNGLMAIAAAHHIGIQPADACQALGEFINARRRLELRG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC------GGDRDQGKRPIMG 403
              G  +Y D+AH   ++   L+ +R+   G  RI+ V          G       P MG
Sbjct: 320 EVNGISVYDDFAHHPTAILATLEALRSKVGGVARILAVLEPRSNTMKMGMSKSDIAPSMG 379

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +     AD   +           +I  + +       +       +R  +E     D ++
Sbjct: 380 R-----ADEVFLYQPVNMPWQVVEIAEQCVQPARWSADIDTL---VRMIVETAQPGDHIL 431

Query: 464 VAGKG-----HET 471
           V   G     HE 
Sbjct: 432 VMSNGGFDGIHEK 444


>gi|261405664|ref|YP_003241905.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
 gi|261282127|gb|ACX64098.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
          Length = 477

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 131/425 (30%), Gaps = 61/425 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            + I  G   +V +                 I +V          A RL       ++ +
Sbjct: 66  DELIHPGVALLVKNPGIPYSVPPVQKAIELEIPIVTEV-----EIAYRLCEAP---MIGI 117

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++  ++V ++ + +GLS    G               TP         +  ++ 
Sbjct: 118 TGSNGKTTTTTWVGKLLENAGLSPIVAGNIG------------TPLS------EAAATAT 159

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + VE SS  L     +  +       N+   H+DYH     Y  A           
Sbjct: 160 EHDWMVVELSSFQLK--GTEAFRPRISCLLNVTETHLDYHGGMDDYV-ASKAKLFANQTS 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E  A++  DD   + ++                 + +H+    A   +         +  
Sbjct: 217 EDTAVLNWDDPVCRNLVPYIKAHIVPFSMSESLREGVHITPPYAPGAQDSDEDCQGRRII 276

Query: 301 DFLFPLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                                 F V NA+ A  + IA G+    + E L     V  R E
Sbjct: 277 YTDGEGFTHEIIRVENIGLPGRFNVGNAMAACAIAIAAGVAPDKLEEALSSFRGVEHRLE 336

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV             A  S +  M L + +       +V+   G DR      ++  +  
Sbjct: 337 FVAELQGVSYYNNSKATNSKATHMALTSFKE-----PVVLIAGGLDRGSDYEELIPSMQG 391

Query: 408 DLADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQ 459
            +  + ++       E  EKI  A    G+   I   N  +A       +R A  +    
Sbjct: 392 RVKAVVLL------GETREKIANAAAKAGLKDIILVDNGEDAASTLTSAVRKAAGLAESG 445

Query: 460 DVLVV 464
           D++++
Sbjct: 446 DIVLL 450


>gi|327313069|ref|YP_004328506.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola F0289]
 gi|326946343|gb|AEA22228.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola F0289]
          Length = 458

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 118/367 (32%), Gaps = 47/367 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              L   GT GK++ ++    I  +S    ++F  G +    +    +  +    I   +
Sbjct: 112 HKGLCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILSGRSDFVVIEADE 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                                        ++      T+   DH+D + T++AY  +   
Sbjct: 172 FDRSFHW----------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             E +    +  +    +      MK+    G +V          H + V          
Sbjct: 210 YTELIQKGGALILHKGLE------MKQHVQEGVKVYEYSRNDGDFHAENVRIADGAITFD 263

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                ++        P    + N + A  +    G  +  +   ++    V  RF+F   
Sbjct: 264 FISPIENVKDVELGQPIPINIENGIAAMAMAQLNGCTADELRRGMKTYGGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
           NSR      DYAH    +    K+++ +   R + V        R +         AL  
Sbjct: 324 NSR-HVFLSDYAHHPKEILQSAKSLKELYPDRKVTVIFQPHLYSRTRDFYKDFAS-ALSH 381

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+T+  P  E+P        I   +  G+    I+K + ++ +R         DVL
Sbjct: 382 FDEVILTEIYPAREEPIPGVTSSLIYDNLRPGVEKQMIKKDDVLDFVR-----SRDFDVL 436

Query: 463 VVAGKGH 469
           VV G G+
Sbjct: 437 VVLGAGN 443


>gi|76801390|ref|YP_326398.1| folylpolyglutamate synthase / dihydropteroate synthase
           [Natronomonas pharaonis DSM 2160]
 gi|76557255|emb|CAI48830.1| folylpolyglutamate synthase / dihydropteroate synthase
           [Natronomonas pharaonis DSM 2160]
          Length = 812

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 10/177 (5%)

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +    +   PL G  Q  NA VAA L   +G  S   +E   +    PGRFE +   
Sbjct: 238 LDGDDWHVETALPLLGAHQARNAGVAAALARTVGNVSTADIERGLRNAHWPGRFEVM--- 294

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +R   + +D AH   S   +   + T     + +VFG   D+D      M + AL  A +
Sbjct: 295 NREPLVVLDGAHNPGSCAGVAATLSTFAYDDLHLVFGAMCDKD---HRGMVE-ALPDATV 350

Query: 413 AIVT-DDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           A     D  R+E  + + A  E + G       G   +A+  A+      D ++V G
Sbjct: 351 AYTCRPDIQRAETADSLAAVFEAVGGAAAVEPVGAVEDAVERALAAAGSDDAVIVCG 407


>gi|56421350|ref|YP_148668.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261418169|ref|YP_003251851.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. Y412MC61]
 gi|297529026|ref|YP_003670301.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|319767871|ref|YP_004133372.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
 gi|68565686|sp|Q5KW36|MURC_GEOKA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56381192|dbj|BAD77100.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus kaustophilus
           HTA426]
 gi|261374626|gb|ACX77369.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC61]
 gi|297252278|gb|ADI25724.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. C56-T3]
 gi|317112737|gb|ADU95229.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52]
          Length = 434

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 124/400 (31%), Gaps = 56/400 (14%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++  A  +   P++      +FL   A +         +AVTG+ GK++
Sbjct: 64  VIAGNAFPDTHEEIEAARQLGVPVIR---YHRFLGQLAGKFTS------IAVTGSHGKTT 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG  +                    +   +  S    +  + 
Sbjct: 115 TTGLLAHVMQGAHPTSYLIGDGTGKGEPGSKY-----FVFEACEYRRHFLSYFPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY       F+A  ++  +    +   +   
Sbjct: 169 ---------------------TNIDFDHPDYFANVDDVFSAFQQMANQ---VKKAIVACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y   +  +           G +  F     V                   F  P  G
Sbjct: 205 DDPYLPNIQAKV---PILFYGFGEENDFQARNIVKTTEGMAFDVFVRNTFFASFAIPRFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC   G+D+  + + L+    V  RF       +   +  DYAH    
Sbjct: 262 THNVLNALAVIALCHYEGVDAGTIAKRLQTFQGVKRRFSEKTVGRQ--VLIDDYAHHPRE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD--DNPRSED 424
           +   L+  R    GR +V         R Q       +  L  AD   + D   + R  +
Sbjct: 320 ITATLEAARQKYPGREVVAIFQPHTYTRTQTFLREFAESLLQ-ADHVYLCDIFGSAREHE 378

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +    ++   IP       +  A+         QD ++V
Sbjct: 379 GKLTIRDLQAQIPRSQLLEEQNVAVLK-----QHQDAVLV 413


>gi|52080122|ref|YP_078913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           licheniformis ATCC 14580]
 gi|52785496|ref|YP_091325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           licheniformis ATCC 14580]
 gi|319646103|ref|ZP_08000333.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           BT1B_CT2]
 gi|62900504|sp|Q65JY2|MURD_BACLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52003333|gb|AAU23275.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           licheniformis ATCC 14580]
 gi|52347998|gb|AAU40632.1| MurD [Bacillus licheniformis ATCC 14580]
 gi|317391853|gb|EFV72650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           BT1B_CT2]
          Length = 451

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 124/366 (33%), Gaps = 52/366 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  L        + +TG++GK++  + V ++ +     +   G   T +S   +    
Sbjct: 105 ELAYHLTDAP---FIGITGSNGKTTTTTLVYEMLKADSKKALVAGNIGTAASEVANQASG 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                +  E SS  L        +   G   N+   H+DYH ++
Sbjct: 162 ------------------DEWIVTELSSFQL--MGTYQFRPKIGLLLNVFDAHLDYHHSR 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK +++     +   A++  DD     + + +              +   +K   
Sbjct: 202 KNYELAKQQVYRN-QSETDVAVVNLDDETVVRLAECSKAEKVYFSVRRTLERGACVKDGA 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +        + E         LPGE  + N L A  +    G+  A V + L     V 
Sbjct: 261 IM-------FNGEPVMPLEDVVLPGEHNLENILAALCIVKTAGVSDAAVRKVLTSFTGVK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RP 400
            R ++V T           A    + +  L   +     + +++   G DR       +P
Sbjct: 314 HRMQYVATIKNRLFYNDSKATNILATKKALSAFQ-----KPVILLAGGLDRGNEFDELKP 368

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M  +       A++T  +  P+ E   K+  E+  GI       N  +A   A  + ++
Sbjct: 369 HMSFV------KAVITFGETAPKFE---KLAEEM--GIQQVKRVDNVEQAATAAFSLSDE 417

Query: 459 QDVLVV 464
            DV+++
Sbjct: 418 GDVILL 423


>gi|325694125|gb|EGD36043.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK150]
          Length = 459

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++       + TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEDFHPQIAAITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +   A     +            V        +T   E         +PG   + NA
Sbjct: 241 MASQTQAAVVPFSTTEKVDGAYLDGDV--------LTFRGEAIMQAAEIGVPGSHNIENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNEVVFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+       +   +++      
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVIL------GQSAARVKRAADQA 401

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A   A       D++++
Sbjct: 402 GVSYLDATDVRDAAHKAFAQAEPGDIILL 430


>gi|311104877|ref|YP_003977730.1| cyanophycin synthetase 1 [Achromobacter xylosoxidans A8]
 gi|310759566|gb|ADP15015.1| cyanophycin synthetase 1 [Achromobacter xylosoxidans A8]
          Length = 857

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 120/372 (32%), Gaps = 29/372 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++       I   +G      G T++   +  + R+ T        A S L
Sbjct: 473 VAVAGTNGKTTTVRLTAHILGAAGNRV---GMTNSDGVYVDNLRIDTGDCSGPRSARSVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFE 235
               V     E +  G+ +  L   +      TN+G        + +         R+  
Sbjct: 530 MHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGYISTVEDLAVVKRVIV 589

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-----------KFIHLKKVCA 284
           + +     A++ A D    E+      +                                
Sbjct: 590 QHVHPSGTAVLNAADPIVAEMAASCPGSITYFAEDRNHPVLATHRAQGLRCVYRDGDAIV 649

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-- 342
              +                     FQV NA+ +     A+G+D+ ++   L        
Sbjct: 650 TAQQGAEETRYPLAAIPLTRNGTITFQVENAMASIAAAWALGLDTDIIRRGLATFVNDAQ 709

Query: 343 --PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGRF     + RG  +  DY H  +++  +++ +  + + R  VV    GDR      
Sbjct: 710 TAPGRFNV--FDYRGATVIADYGHNPDAILALVRAVDAMPAKRRSVVISGAGDRRDEDIR 767

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAI 453
           +  +I  D  D  ++  D   R     ++ A +  G+          E      AI TA+
Sbjct: 768 MQTEILGDAFDDVLLYQDQCQRGRADGEVLALLQQGLVNASRSKHVEEIHGEFLAIDTAL 827

Query: 454 EMLNKQDVLVVA 465
             L   D+ ++ 
Sbjct: 828 ARLGAGDLCLIL 839


>gi|325838831|ref|ZP_08166678.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490694|gb|EGC93003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 460

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 138/421 (32%), Gaps = 32/421 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQA-GWIFVAIVGNKEDGHLF 59
           MK   L      ++I+             I+ V + ++ +++   +   +     D   F
Sbjct: 1   MK--KLSIGTIRKVIHGS--LVKGNDNLMISSVVTQAKQVESSNTLLFLLNPRTFD-WRF 55

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I + +     AIV               +N  I+ V+  ++    F      +    ++A
Sbjct: 56  IKKYL---PCAIVTDRPI----GHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIA 108

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT GK++     + I +    +   +               T     +L+  +    S
Sbjct: 109 VTGTCGKTTTKDMTRHILKHFYKTEGTVKS-------------TNGESKHLSYLMKLNDS 155

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                     ++ G  +      K   G  TN+G DH+D  +T + Y  AK  + + +  
Sbjct: 156 VEAAVYETAVAAPGYIKKSSRYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGE 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           K +  +    D  + + +      G  +     +        +  +       ++V  K 
Sbjct: 216 KGTLIL--NADDDNIKKISLEDFKGKIIYYGVGENADYQASNIEFVPKGMSYILTVNNKR 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
           +    P  G  QVYN++ A      +GI     ++ L     +   FE +   ++   I 
Sbjct: 274 YKVFIPGYGVHQVYNSMAAIAAAYEVGISYRDSIKLLPSFKHLNSHFEVMKGLNQCQLIV 333

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGKRPIMGKIALDLADIAIV 415
             +     SLE  +K +  I   R  +         G   +     +G +        ++
Sbjct: 334 DTWNINPTSLEASIKTMCEIAKNRKKIALVGSIDALGKNSRQLHQKVGDMICQYDLDVLI 393

Query: 416 T 416
           T
Sbjct: 394 T 394


>gi|218245822|ref|YP_002371193.1| cyanophycin synthetase [Cyanothece sp. PCC 8801]
 gi|218166300|gb|ACK65037.1| cyanophycin synthetase [Cyanothece sp. PCC 8801]
          Length = 877

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 14/177 (7%)

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSR 354
           +          F + NAL A     A G+D  ++ + +       +  PGR      N  
Sbjct: 681 NIPMTMGGMAPFMIANALAACLATFAQGVDIEMIRQGVRTFKASVNQTPGRMNL--FNLG 738

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VDYAH     E +   +R     R+ VV G G  RD+    ++GKIA  + +  I
Sbjct: 739 DYHALVDYAHNPAGYEAVGGFVRNWKGERLGVVGGPGDRRDEDL-ILLGKIAAQVFNRII 797

Query: 415 VTD-----DNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVV 464
           V +        R E  + I   I+            +  EAI   +  +N+  ++V+
Sbjct: 798 VKEDDDRRGRDRGEVADLIIKGIVQENSQIEYEAILDETEAIEVGLNRVNRGGLVVI 854


>gi|237807298|ref|YP_002891738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
 gi|237499559|gb|ACQ92152.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
          Length = 430

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 126/398 (31%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV S   +L   +        + +V +              +    ++A+TG++GKS
Sbjct: 61  ASLIVASPGIALATPALQAAQMAGVEIVGDIE--------LFAREAKAPVVAITGSNGKS 112

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V  + +++G      G   T               + L    + L         +
Sbjct: 113 TVTTLVGLMAEQAGFKVGIGGNIGTP-------------ALDLLLQPADL-------YVL 152

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A    NL  DH+D +     Y  AK               I+
Sbjct: 153 ELSSFQLET--TSSLQPAAAVILNLSEDHLDRYDGMAGYLAAKQ-------------RIF 197

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A+  +       A     +       G            +   +++  +         + 
Sbjct: 198 ANAKHIVVNRDDAATLPPQHAYWQSFGLNSESYGRVQQDDGLWLSVDGKPVLSVAELNIV 257

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+GI  A  L  L     +  R +FV   +    I    A    
Sbjct: 258 GAHNQMNALAAMALADAVGIPQAAQLTVLRSFTGLSHRCQFVRDVNGVRWINDSKATNVG 317

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    +  +     GR+ ++ G  G + Q   P+   +A  +  +     D         
Sbjct: 318 STLAAVAGVGESVQGRLWLLAGGQG-KGQDFSPLQPLLANQIYRMVCFGQD-------AG 369

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I  E+           +  EA+R+    +   D +++A
Sbjct: 370 ILMELA---DNTQRVADLDEAVRSVAAEVQPGDWVLLA 404


>gi|184156588|ref|YP_001844927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ACICU]
 gi|332874928|ref|ZP_08442779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
 gi|226711877|sp|B2I1V6|MURD_ACIBC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183208182|gb|ACC55580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ACICU]
 gi|322506475|gb|ADX01929.1| murD [Acinetobacter baumannii 1656-2]
 gi|323516354|gb|ADX90735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332736871|gb|EGJ67847.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
          Length = 448

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 126/408 (30%), Gaps = 72/408 (17%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  AIA+G   +                ++ PI+                         A
Sbjct: 82  IQAAIAKGISVV-------GDIQLLRRATDVPIV-------------------------A 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++ KS+V + +  + + +G      G                   + L K    L  
Sbjct: 110 ITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL-- 154

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                + +E SS  L+      +        N+  DH+D H     Y  AK      +  
Sbjct: 155 -----LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGNMLGYHQAK----HRIFQ 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                +   DDA S+ ++          L+     ++  L+         +    +    
Sbjct: 204 GAKKVVFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKSS 263

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             ++    G   V NAL    L  AIG+    +LE L++   +  R E+V T        
Sbjct: 264 DLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKRFKGLEHRCEYVKTVRDVRYYN 320

Query: 360 VDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
                   +    +        +  G++ ++ G  G + Q   P+   I    A + ++ 
Sbjct: 321 DSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFSPLRSSI-EKYAKVVVLI 378

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 ED   I   I  G    +      EA+         +DV+++
Sbjct: 379 -----GEDAPVIEQAI-QGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|312136564|ref|YP_004003901.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224283|gb|ADP77139.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 492

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 92/505 (18%), Positives = 160/505 (31%), Gaps = 63/505 (12%)

Query: 1   MKLQD----LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIV--GNKE 54
           M+L++    +I            I   +  +  ++++  D+ +++   IF      G K 
Sbjct: 1   MQLKNKKIVVIGGCGTVGSLMARILKSKGNDVTVSDIRKDT-YLK--DIF---KSEGIKL 54

Query: 55  D--GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           D  GH      I + A+AI           S T       L+  N +  L      L  K
Sbjct: 55  DLGGHD--LSLIKK-ADAI-------AIAPSLTNNKKVLNLINKNPKAELIKIEDILKYK 104

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT--STISSFAQDNRLTTPSP--- 167
             + ++ +TGT+GK++    ++ I + SGL   +                          
Sbjct: 105 VKKPVVGITGTNGKTTTREMLKNILKISGLEVPEHHLNIQGNTEFIPPLQARLPGDVAVV 164

Query: 168 -IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN----------LGRDH 216
            I      + +                + +  L  I                   +    
Sbjct: 165 EIGTFGVKNEIKRSAKNSNVTVGVITNISRDHLKNISFQEYVECKKEITEVAKKLVLNAD 224

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
                +          +    +  +            K +       G         G  
Sbjct: 225 DPIVASFGNDNTVYYGIENLKIKIKHFFEDRDCPFCGKNLKYEEIFLGHLGKYECECGFK 284

Query: 277 IHLKKVCAIH-NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                V AI    ++  +S++  +        G F VYNAL AA     + ID   ++E 
Sbjct: 285 RPRPTVKAIDVENKKFILSIDSNEGLVKLEYGGIFNVYNALAAAAAAFILKIDFDKIIEG 344

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     VPGR E      +   I +DYAH    ++ IL+ I+    GR+IVV     +  
Sbjct: 345 LNTFKKVPGRMEK---IYKKPEIIIDYAHNVAGVKAILQTIKP--KGRLIVVNTISSESG 399

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRS------------EDPEKIRAEIIHGIPGFIEKG 443
             +   + KI    ADI I    + R             +  EK   +   G   F    
Sbjct: 400 IKEDIKIAKILSS-ADILIPASYSARKASKYTNTTVINVKSTEKKFKKGTLGASKFQV-- 456

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
              EAI+ A+   +K D +++ G+G
Sbjct: 457 --EEAIKKALSYADKNDTILIIGEG 479


>gi|300869091|ref|ZP_07113691.1| UDP-N-acetylmuramate--L-alanine ligase [Oscillatoria sp. PCC 6506]
 gi|300332907|emb|CBN58887.1| UDP-N-acetylmuramate--L-alanine ligase [Oscillatoria sp. PCC 6506]
          Length = 539

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 76/462 (16%), Positives = 140/462 (30%), Gaps = 83/462 (17%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEA--------IVVSSAY--SLQDFSATIRSNTPILVVD 96
           +A  G+  +G         +GA A        ++ S+A   +  ++   +    PI    
Sbjct: 100 IAASGDNRNG---------KGAIALSHLDLPQVICSTAIHPANSEYRRALDLGCPIFHRS 150

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +    L               +AV GT GK++ +S +  +  ++GL    +     ++++
Sbjct: 151 DVLAAL---------ILDYQSIAVAGTHGKTTTSSMIGFMLLKAGLDPTIV-VGGEVNAW 200

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             + RL                     H     +        L  +    G  TN+  DH
Sbjct: 201 EGNARLG--------------------HGPYLVAEADESDGSLVKLSAKIGVVTNIELDH 240

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
            D++ T                  +        D     +                +G  
Sbjct: 241 PDHYDTLDQ---VIATFNVFAQNCQILVGCIDCDTVKNSLK-----PSVSYSLEADRGAD 292

Query: 277 IHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             +  V    +     +   G    +    L G+  + NAL A  +   +G++ A++ + 
Sbjct: 293 YTVDSVEYRADCTIARVWERGTALGEMQLKLLGQHNLSNALAAVAVGRLLGLEFAVIAKA 352

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---------------TIT 380
           +        RFE  G    G     DYAH  + +   L + R                  
Sbjct: 353 IADFEGARRRFEVRG-EHNGILFVDDYAHHPSEIRATLTSARLRIENSKPKPKSKIKNSK 411

Query: 381 SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
           S R++ VF      R         +   D ADI IV+D     E        EK+   I 
Sbjct: 412 SRRVVAVFQPHRYSRTLTFLTEFAQSFSD-ADIVIVSDIYSAGEPNTGQISGEKLADLIA 470

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                   + +     +   E+L   D+ +  G G+    I+
Sbjct: 471 EHHQQVYYQPSLQSIAKFLTEILRPGDLALFLGAGNLN-QII 511


>gi|206602131|gb|EDZ38613.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 464

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 138/410 (33%), Gaps = 45/410 (10%)

Query: 70  AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+V+S+A S ++       R   P++      + LS       G      +AV G+ GK+
Sbjct: 68  AVVISTAISPENPELLEARRLGIPVVH---RGEALSGIMRGFRG------VAVAGSHGKT 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  +    G           +  F  + R+                       ++
Sbjct: 119 TTTSMIAHVL-AHGGLDPTCVVGGRVPGFGGNARVGK--------------------KNI 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +           I       TN+ ++H+DY+Q+      A    F   +P E  A++ 
Sbjct: 158 FVAEADESDGSFLKISPHVAVVTNIDQEHLDYYQSFDQLK-AAFERFLASVPPEGLAVVC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD     ++   +                       +     V +  +     F   +P
Sbjct: 217 LDDPELSNILPSLNAPHWTYGFNPSADVVGSDVSAEGLSTSFSVRLRGKD-IGSFSLNIP 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL    +    G+++  V E LE+   V  RF  VG    G RI  DY H   
Sbjct: 276 GVHNVLNALATIAVGHHFGLEAECVREALERFRGVGRRFTQVGEEG-GIRIVDDYGHHPT 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP 425
            + + L   R     R +VV      R    R ++ + A    LAD+ ++ +     E P
Sbjct: 335 EIGVTLAAARQAYPDRRLVV-AFQPHRFSRTRDLLSRFASAFQLADVLVLGEIYGAGESP 393

Query: 426 ------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++  EI            ++ E I   + +L   D+L+  G G
Sbjct: 394 IAGITGRRLFDEIRVSFENEAYFAADQSEMIARLMTILKPGDLLMTMGAG 443


>gi|315924910|ref|ZP_07921127.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621809|gb|EFV01773.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 480

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 118/407 (28%), Gaps = 42/407 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A V        +       + P++   +   +L L +           + V GT GK++ 
Sbjct: 81  AAVHE---DNPEMIRANALDIPLVERSD---YLGLLSQVFP-----KTIGVAGTHGKTTT 129

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  +   + +          I     +  L     + +       S     H     
Sbjct: 130 SSMIATLLHCAEMDPSVS-IGGNIGVIGGNATLGKSDYLVIESCEYVDSFLKTEHFI--- 185

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                            G  TN+  DH+DY +            F  +LP +   I Y D
Sbjct: 186 -----------------GVITNIEEDHLDYFKGGLKQIKHSFHDFGSILPPDGLMIAYGD 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                +V+                             N              F   +PG+
Sbjct: 229 SDDVLDVVSDLACQVITYGLSDKNEWVARNITYNDEGNPFFDAYHNGTLYGRFALRIPGQ 288

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA+        + I    V E L+       RFEF G    G  +Y DYAH    L
Sbjct: 289 HNVLNAMACIACADYLNIQKETVEEALDHFGGAKRRFEFRG-AVGGINVYEDYAHHPTEL 347

Query: 370 EMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED---- 424
           ++++         ++ VV+      R         K      D  ++++     E     
Sbjct: 348 KVVIDACLNHAHNKLWVVYQPHSYSRIYYLFDEFVKSFEK-VDKLVISEIYSNRETNDWD 406

Query: 425 --PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             PE +   I        +      + ++   + +   D+++VAG G
Sbjct: 407 IFPEDLAKRIKQNYQVPAVVISEFADIVKFLTDNVEADDLVLVAGAG 453


>gi|254502723|ref|ZP_05114874.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
 gi|222438794|gb|EEE45473.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
          Length = 469

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 90/282 (31%), Gaps = 17/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++        A  +  + +       +          +     
Sbjct: 171 LPADVAIVTNIDPEHLDHYGDFSGVQKAFRQFIDNVPFYGFAVMCLDHPEVQTMIGNIED 230

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNAL 316
                  +            +    +   VTI       E +  + + P+PG   V NA 
Sbjct: 231 RRIVTYGTNPQADVRFTDVSMDGGKSMFSVTIRDRRSGEETELSNLVLPMPGLHNVSNAT 290

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+    + + +     V  RF F G  + G +++ DY H    ++ +L   
Sbjct: 291 AAIAVASQLGVSPQDIEKGISSFGGVKRRFTFTG-EAGGVQVFDDYGHHPVEIKAVLHAA 349

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA--EI 432
           R  T G++I V      R      +    +     AD  ++T      E P +     ++
Sbjct: 350 RESTDGKVIAV--MQPHRYTRLHSLFDDFSNCFNDADAVVITPVYEAGEQPIEGARHTDL 407

Query: 433 IHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + G+               E      E+    D ++  G G+
Sbjct: 408 VSGLKTRGHRQVQAINGPEELASVVKELAGPGDFVICLGAGN 449


>gi|222149135|ref|YP_002550092.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium vitis S4]
 gi|254763734|sp|B9JY53|MURC_AGRVS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221736120|gb|ACM37083.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium vitis S4]
          Length = 471

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 21/284 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPGEFQVYNAL 316
                              +     +   V I        F F     P+PG   + NA 
Sbjct: 233 RKVVTYGENPQADVRFFNVRNEGTKSIFDVEIRRRRTGRVFSFKDLTLPMPGRHNISNAC 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   + I    + + L     V  RF   G    G +++ DY H    ++ +LK  
Sbjct: 293 AAIAVANRLDISEEAIRKGLSTFGGVKRRFTLTG-TWNGVQVFDDYGHHPVEIKAVLKAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R    GRII V      R      +    A     AD  +++      EDP      E +
Sbjct: 352 RESCKGRIIAV--HQPHRFSRLSSLFEDFANCFNDADSILLSPVYAAGEDPIEGIDSEAL 409

Query: 429 RAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + I  G      ++   +++  I + I      D +V+ G G+
Sbjct: 410 VSRIRSGGHRDVRYLASPDQLAGIISTI--AQPGDFVVLLGAGN 451


>gi|302382172|ref|YP_003817995.1| Mur ligase middle domain protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192800|gb|ADL00372.1| Mur ligase middle domain protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 469

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NAL A G   A+G+     +  LE    +  R E VG  + G  +  D+AH
Sbjct: 281 NVPGAHNVANALAALGAVRALGVPLDQAVASLETFAGIRRRMEVVGAAN-GVTVIDDFAH 339

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM-GKIALDLA-----DIAIV--- 415
             + +   +K +     GR++++F   G    G   +M  +     A     D  ++   
Sbjct: 340 NPDKIAATVKTLHAFD-GRLLILFQPHG---FGPLKLMKAEFIDTFAGLLRPDDVLLMPE 395

Query: 416 ------TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 T D  RS   E I A +           +R       I++    D ++V G
Sbjct: 396 PVYYGGTTD--RSVGSEDIAAGVRAAGRTAEALSDRAACGDRLIDLARPGDRIIVMG 450


>gi|229006196|ref|ZP_04163882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
 gi|228755037|gb|EEM04396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
          Length = 450

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 133/405 (32%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++  +   ++ +         G   T++                       +++ 
Sbjct: 119 GSNGKTTTTTLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQAAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVETFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADD     +   +        +         +K        +++    +     
Sbjct: 219 YSVI-NADDVDVMALSANSKGQKVLFSATKVIEDGACIKDGALYFKGEKIVEVQDIV--- 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+++  ++  L++   V  R E+V T +        
Sbjct: 275 ----LPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           +++   G DR      ++        +    I+T   
Sbjct: 331 KATNMLATEKALSAFTQ-----PVILLAGGLDRGNEFDDLI-----PYFEHVKAILTYGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +RA    GI       N  EA+  A       DV+++
Sbjct: 381 TA---PKLVRAAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|221202515|ref|ZP_03575545.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
 gi|221208163|ref|ZP_03581168.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221172066|gb|EEE04508.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221177610|gb|EEE10027.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
          Length = 465

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 81/429 (18%), Positives = 141/429 (32%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R          +  + + A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGL--SPDAQVRAEDIDARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG+     +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G  
Sbjct: 261 IREGRTPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDV 320

Query: 353 SR----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                    +  DY H    +   +   R    GR  +V      R    R         
Sbjct: 321 PTADGGRYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNV 379

Query: 409 LA--DIAIVTD------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQ 459
           L+  D  ++T+          + + + +   +             ++A+  A+       
Sbjct: 380 LSTVDALVLTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|206895540|ref|YP_002247022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738157|gb|ACI17235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 441

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 88/278 (31%), Gaps = 23/278 (8%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +     F NL  DH+D H + + YF  K R+F+   P++   +  
Sbjct: 159 EVSSFQLET--VHTFRPQVAVFLNLTPDHLDRHGSMENYFQTKARIFKLQQPQDLGVLNA 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D   S  +           +  G          V          + + G+         
Sbjct: 217 EDRWASSLIGSLKSRTLAFGIEKGDVHWSEGFLNVLGTTVASVSDVKLRGR--------- 267

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               + N       C  +  D       + +      R EFV +           A   +
Sbjct: 268 --HNLANIAAGVAACYHLLPDGFDFGSAISQFCAPEHRIEFVRSVGGVSFYDDSKATNPD 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S  + L+  +         V    G R++G       +A  +   + V       E  E 
Sbjct: 326 STIVALEAFQEP-------VVVILGGRNKGM--DFAALAEFIKRKSTVKWAVVMGEAKES 376

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I+  ++  G     E  +  EA+  A E+    DV+++
Sbjct: 377 IKESLLANGFENISEADSLEEAVHLAYEIAAPGDVVLL 414


>gi|134102298|ref|YP_001107959.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003739|ref|ZP_06561712.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|189029030|sp|A4FLV9|MURC_SACEN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133914921|emb|CAM05034.1| UDP-N-acetylmuramate--alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 490

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 101/451 (22%), Positives = 148/451 (32%), Gaps = 58/451 (12%)

Query: 36  DSRHIQAGWIFVAIVGNKED---GHLFIPQAIAQ--G-AEAIVVSSAY--SLQDFSATIR 87
           DSR +      +A+         GH    + I Q  G   A+VVS+A      +  A   
Sbjct: 56  DSRTV------LALKAQGAHIALGHR--AENIEQFDGDPTAVVVSTAIRRDNPELVAAQE 107

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P+L      + L+   +         +  V GT GK+S  S +              
Sbjct: 108 RGVPVLRRA---EALAALMA------DHRVACVAGTHGKTSTTSMLTVA----------- 147

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                     Q  RL     I      S  ++         A +   D   L        
Sbjct: 148 ---------LQHCRLDPSFAIGGDLNESGANAHHGDGGVFVAEADESDGSFLV-FAPSVA 197

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV--MKRAHNAGC 265
             TN+  DH+D+H T +AY     R  E + P         D   +      + A     
Sbjct: 198 VVTNVEPDHLDHHGTAEAYTEVFQRFVERIEPGGVLIACADDAGAALLADQAEAAGVRVR 257

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R            +      H    VT+ V G   D    +PGE    NA+ A    + +
Sbjct: 258 RYGHEVTADGDARMVGYRPEHGSGVVTVEVSGDRLDVQVAVPGEHMAANAVAALLAGLEL 317

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRI 384
           G     +LE L     V  RFEF G    G R+Y DYAH    ++  L+  R +   GR+
Sbjct: 318 GAPLEGLLEGLAAFGGVRRRFEFKGRAD-GVRVYDDYAHHPTEVDAQLRAARPVVGDGRL 376

Query: 385 IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIP 437
           +VVF      R           AL LAD  +V D     EDP      E I   +     
Sbjct: 377 VVVFQPHLYSRTAAFSGEFA-TALGLADEVVVLDVYGAREDPQPGVTGELIAESVPLPAE 435

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               + +   A      ++   D+++  G G
Sbjct: 436 RVHYEASFTAAAPLVAGLVQPGDLVLTMGAG 466


>gi|300788096|ref|YP_003768387.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
 gi|299797610|gb|ADJ47985.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
          Length = 465

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 93/419 (22%), Positives = 147/419 (35%), Gaps = 61/419 (14%)

Query: 69  EAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            A+VVS+A      + +A   +  P+L            A  + G     +  + GT GK
Sbjct: 73  SAVVVSTAIKETNPELAAARAAGIPVLH------RAQALAGLMEGH---RVACIAGTHGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTH 184
           +S  S +                        Q  RL     I   L ++ +         
Sbjct: 124 TSTTSMLTVA--------------------LQHCRLDPSFAIGGDLNESGANAHHGEGGV 163

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              EA                    TN+  DH+D+H T +AY       F   +      
Sbjct: 164 FVAEADESD---GSFLTYSPSVAVVTNVEPDHLDHHGTAEAYTKV-FTEFVSRIVPGGLL 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFD 301
           I+  DD  + ++ ++A + G RV   G          + +     +   V + ++G++  
Sbjct: 220 IVCGDDPAADDLGRQAEDLGVRVRRYGRTATGPGDARILEYVPAPDGGVVRLVLDGEEVS 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PGE    NA+ A    I +G     +++ L     V  RFEF G      R+Y D
Sbjct: 280 VRVAVPGEHMALNAIAALLAGIELGAPVPGLVDGLAAFGGVRRRFEFKGRAG-DVRVYDD 338

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAH    +   L+ +R    SGR+IVVF      R +       + AL LAD  +V D  
Sbjct: 339 YAHHPTEVAAQLRAVRTAAGSGRVIVVFQPHLYSRTKTFSVEFAE-ALSLADEVVVLDVY 397

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT----------AIEMLNKQDVLVVAGKG 468
              E+PE        GI G +       A+            A  +    D++V  G G
Sbjct: 398 GAREEPE-------PGITGALIADRVTAAVHYEPAFDVAAPLAAGLAKPGDLVVTMGAG 449


>gi|196045927|ref|ZP_03113156.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
 gi|196023367|gb|EDX62045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
          Length = 450

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 124/403 (30%), Gaps = 47/403 (11%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPILVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++      ++ +         G   T++                        ++ 
Sbjct: 119 GSNGKTTTTMLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQDAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVELFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEND 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADD     +   +        +         +K               E     
Sbjct: 219 YSVI-NADDVDVMALSAYSKGQKVLFSTTKEIEDGACIKDNALY-------FKAEKVVEV 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+ +  +   L++   V  R E+V T +        
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + E  L            V+   G DR      ++       A   IVT     
Sbjct: 331 KATNMLATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA 382

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           S   + +RA    G+          EA+  A       DV+++
Sbjct: 383 S---KLVRAAEKAGLETIESVDTLEEAVVKAYAHSTDGDVILL 422


>gi|269926710|ref|YP_003323333.1| UDP-N-acetylmuramate/alanine ligase [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790370|gb|ACZ42511.1| UDP-N-acetylmuramate/alanine ligase [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 452

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 113/360 (31%), Gaps = 33/360 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VV+      + S  + +    L V +  + L    +       +  +A+ GT GK
Sbjct: 59  GVDCVVVTKPV--MNTSEVLSAVEKGLKVVDRAELLGQLMN------GKKGIAIAGTHGK 110

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + V +I  RSG+    +        +    R                         
Sbjct: 111 TTTTALVAEILIRSGVDPTVL-VGGVPVGWEIGGRYGKDEW------------------- 150

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A +    +  L  +       TN+  DH D   T+    +A       + P     + 
Sbjct: 151 MVAEADEYARSFLW-LHPELAVITNIEHDHPDIFPTECELVDAFSSFLRGMKPDGKVFVC 209

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--CAIHNKQQVTISVEGKDFDFLF 304
                  + V   A  +     + G +G      +V            I  +        
Sbjct: 210 KESRLAMEVVKGIASASRLYYQTYGVEGGCDWSARVTRKVGGVTCFDIIGPDFMLEGLKT 269

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   + N + A  + I        V   +++   V  RFE+ G  S+G  +  DYAH
Sbjct: 270 SLPGRHNLINIVGAVAVGINASASPEGVKSAIQEFRGVKRRFEYKG-ESKGVIVLDDYAH 328

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-MGKIALDLADIAIVTDDNPRSE 423
               +   +   R    GR I V        + K  +     AL LAD   + D     E
Sbjct: 329 HPTEIAATISAAREYYPGRQIFVAFQPHTYSRTKTFLAHFAEALKLADKVFLLDVYAARE 388


>gi|167766034|ref|ZP_02438087.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
 gi|167712114|gb|EDS22693.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
          Length = 463

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 124/452 (27%), Gaps = 53/452 (11%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------- 92
           I+ G    +I G+       I     +GA+  +  +A ++ D    +     I       
Sbjct: 32  IKEG---FSISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEE 88

Query: 93  --------LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   + V      L            +N +AV+GT GK++  S +  I   +G + 
Sbjct: 89  YKEAIRRNIPVMKRATLLGQMMHNY-----QNAIAVSGTHGKTTTTSMLSYIL-LAGNTD 142

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             I     + +   + R+               S                          
Sbjct: 143 PTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--------------------P 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+  DH+D+ +      ++      +L       I    +     V        
Sbjct: 183 KISIILNIEEDHMDFFKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYA 242

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              L               A  +                  + GE  V NAL A      
Sbjct: 243 TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKR 302

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGID   + + L        RFE  G       +  DYAH    +   L++ +      +
Sbjct: 303 IGIDVDTMKKGLLGFTGAKRRFELKG-TCNDFTVVDDYAHHPTEIRATLESAKNYPHNEL 361

Query: 385 IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIP 437
             VF      R         K AL L D  IVTD     E        + I   +     
Sbjct: 362 WCVFQPHTYSRTIAFLDDFAK-ALSLCDHVIVTDIYAAREKDTGIVSSKDIVDRMADYDV 420

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                    +  +  ++   K D+L+  G G+
Sbjct: 421 DVHYIKEFDDIEKFILKNCKKNDLLITMGAGN 452


>gi|302391532|ref|YP_003827352.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM
           5501]
 gi|302203609|gb|ADL12287.1| UDP-N-acetylmuramate/alanine ligase [Acetohalobium arabaticum DSM
           5501]
          Length = 469

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 10/184 (5%)

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              + +  +    +PG+  + NAL   G+ + IG++ + + E L+    V  RFE +G  
Sbjct: 260 YRYQDRLGELKLNVPGKHNLSNALAVIGIGLHIGLEFSKIAEALKDFTGVKRRFEKLG-K 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLAD 411
            RG  +  DYAH    LE  L     +   RII VF      R +        +A   AD
Sbjct: 319 YRGAVLVDDYAHHPTELEATLAAANNMDFERIIAVFQPHRYTRTKFLLEEF-SLAFGDAD 377

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I+TD     E+P      EKI   I   +           +      + +   D+++ 
Sbjct: 378 EVIITDIYASGEEPIPGVKAEKIAELINQRVFQKAKFIAELDKVYDYLKDRIGAGDLVLT 437

Query: 465 AGKG 468
            G G
Sbjct: 438 LGAG 441


>gi|108759161|ref|YP_633742.1| UDP-N-acetylmuramate--L-alanine ligase [Myxococcus xanthus DK 1622]
 gi|123374163|sp|Q1D0T1|MURC_MYXXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108463041|gb|ABF88226.1| UDP-N-acetylmuramate--alanine ligase [Myxococcus xanthus DK 1622]
          Length = 472

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 75/471 (15%), Positives = 151/471 (32%), Gaps = 63/471 (13%)

Query: 11  FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEA 70
             E++  L  + +   + + ++++   R ++ G  F        +GH      I   A+ 
Sbjct: 31  IAEVLLNLG-YRVSGSDLRESDITR--RLVRMGATFF-------EGHR-AQNLIQ--ADV 77

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKS 127
           +V+SSA    +    A  +   P++     R   L+           +  +AV G+ GK+
Sbjct: 78  VVISSAVRKDNPEVVAARQRKIPVI----PRAEMLAELMRL------KYAVAVAGSHGKT 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   +GL    +     ++    + +L       L    +  S     H   
Sbjct: 128 TTTSMVATVLSAAGLDPTAV-VGGKVNVLDSNAKLGKSE---LMVVEADESDGSFLH--- 180

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D++       +A    F   +P     ++ 
Sbjct: 181 --------------LHPSIAIVTNIDPEHMDHYGDLDTLQSA-FVEFCNRVPFYGLNVLC 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPL 306
            D+   + ++ R       V           L+ +       +       +   +F   +
Sbjct: 226 LDNPNVQALLPRIE--KRFVTYGSSHMADYRLENIQLDGFTTRFNAYRREESLGEFRVRM 283

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G    +NAL    +   + I    V E L +   V  RF   G  ++G  +  DY H  
Sbjct: 284 VGAHNAFNALAVIAVAEEMDIPLETVRESLAEFGGVQRRFTVRG-EAQGITVVDDYGHHP 342

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED 424
             +   L   R     R  VV      R      +M +       +D+  VT      E+
Sbjct: 343 TEVLATLAGARRAFGRR--VVVAFQPHRYTRTHDLMKEFTTSFNDSDVLFVTSVYAAGEE 400

Query: 425 P------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  + +   +   G         R +     +  L + D+++  G G
Sbjct: 401 RIHGATGDALADAVRAHGHRDVTFVEKRTDLPAALLPRLREGDLVLTLGAG 451


>gi|303229434|ref|ZP_07316224.1| putative tetrahydrofolate synthase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515970|gb|EFL57922.1| putative tetrahydrofolate synthase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 435

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 14/160 (8%)

Query: 314 NALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            AL A  L +          +          GRFE   T         D AH +   E  
Sbjct: 265 CALQAVRLVMEHDDTISEETMREGFARATWAGRFEIKKTL--DRTFIFDGAHNAAGAESF 322

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAI-VTDDNPRSEDPEKI 428
                         +V     D+D      MG I   +   D  I V    PR+E PEK+
Sbjct: 323 GMTYHELFGDTPKTMVMAILSDKD-----EMGIIHEVVKPKDTVIAVAAPTPRTEVPEKL 377

Query: 429 RAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +   + G +   + +   A+  A++     D++VV G
Sbjct: 378 VETVRQCVKGVVAQTEDSVSSALDLALQSTQDGDIIVVCG 417


>gi|282891539|ref|ZP_06300030.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498507|gb|EFB40835.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 116/395 (29%), Gaps = 51/395 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S    L      +     I       K L              ++ +TGT+GK++V
Sbjct: 73  LVVTSPGVPLTHPVLQLAQAKNI-------KILGEIELAFRS-LRNKLIGITGTNGKTTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  +   +G+ +  +G      S        T   + L                   
Sbjct: 125 TLLLTHLLNYAGIPAKAVGNVGEPLSAEITCSSETVLVVEL------------------- 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  LD   L   +L  G   N+  DH+D + + + Y           L K        +
Sbjct: 166 SSFQLDT--LQSRQLDMGVILNITPDHLDRYASMEDYA----------LSKMKIKSCIKE 213

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            A      K   N G    +                  +               +     
Sbjct: 214 GAPLYMEEKAFQNYGFLQANFPCHLYGYSHNCHLMSDQQHLFLNKNIDSILPIEYRETKS 273

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            ++ N + A GLC  +GID+ L  E +   +  P R E V                 +++
Sbjct: 274 HRLENLMAAYGLCREMGIDATLFWEGVSTFNTPPHRIEKVAIFKNVSYYNDSKGTNIDAV 333

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              ++ I        I++   G D+     P +   A  +  I  +       +  EK+ 
Sbjct: 334 MRAIETIEG-----PIILIAGGVDKGTDFSPWISAFANKVKHICAI------GQATEKLD 382

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +       +   N  +A++ A  +    D +++
Sbjct: 383 RTLSKSF-NVVRCQNMHDAVKHASSLAYPGDNVLL 416


>gi|77919795|ref|YP_357610.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
 gi|109892717|sp|Q3A2G7|MURC_PELCD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77545878|gb|ABA89440.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
          Length = 458

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 138/418 (33%), Gaps = 47/418 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S+A    D    I ++  ++ V    + L+      YG      +AV GT GK+
Sbjct: 65  ADVVVTSTAVKS-DNPEVIEAHRRLIPVIPRAEMLAELMRMKYG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +  +SG+    +     + S   + +L                         
Sbjct: 118 TTTSMVSTVLSKSGIDPTVV-IGGRLDSIGSNAKLGQG--------------------KF 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +           +  I    TN+  DH+DY+             F   +P    AI+ 
Sbjct: 157 LVAEADESDGSFLKLSPIIAVVTNVDADHLDYYSDLDEIKRT-FVDFINKIPFYGVAILC 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPL 306
            DD   + ++ +                    +++     +   T+  +G+        +
Sbjct: 216 LDDPNVQALIPQVGKRFVTYGMSTQADYN--AQEISYQEERTTFTVCWQGERLGQLSIRM 273

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A  +   + I    + E       V  RF+      R   +  DY H  
Sbjct: 274 PGQHNVLNALAAVAVARELEIPFEQIAEAFCDFCGVQRRFQP-KYQGRDIMVVDDYGHHP 332

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED 424
             +++ L    +  + R++ VF     R    + +  +       AD  +V D     E 
Sbjct: 333 AEIKVTLAAACSGWNRRVVAVF--QPHRYSRTQALFDEFVTAFYQADHLVVMDIYAAGET 390

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKGHETVHI 474
           P        +   I  HG        +  EA+     E++   D+++  G G+    I
Sbjct: 391 PIPGVEARLLAEGIAGHGHRDVHYCPD-AEAVAAHLREVVQAGDLVLTLGAGN-VWQI 446


>gi|325293464|ref|YP_004279328.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
 gi|325061317|gb|ADY65008.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
          Length = 471

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 89/282 (31%), Gaps = 17/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPGEFQVYNAL 316
                              ++    +   V I        F F     P+PG   V NA 
Sbjct: 233 RKVITYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSFTDLVLPMPGRHNVSNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI  A + + L     V  RF   G  + G +++ DY H    ++ +L   
Sbjct: 293 AAIAVANRLGISEADIKKGLASFAGVKRRFTLTG-EANGVQVFDDYGHHPVEIKAVLAAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R    GRI+ V      R      +    A     AD  I+       EDP      E +
Sbjct: 352 REACKGRIVAV--HQPHRYSRLSSLFDDFAHCFNDADTIILAPVYAAGEDPIEGASSEAL 409

Query: 429 RAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + I   G         R +       + N  D +V+ G G+
Sbjct: 410 VSAIKAAGHRDARFLEKREDLASMVAGIANPGDFVVLLGAGN 451


>gi|261881129|ref|ZP_06007556.1| UDP-N-acetylmuramate-alanine ligase [Prevotella bergensis DSM
           17361]
 gi|270332134|gb|EFA42920.1| UDP-N-acetylmuramate-alanine ligase [Prevotella bergensis DSM
           17361]
          Length = 459

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 124/436 (28%), Gaps = 55/436 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP A       +VV +     +    +        V    + L        G      L 
Sbjct: 63  IPHACRNKETCLVVYTPAVSDNHKELLYFRNNGFEVQKRAQVLGTLTRTHKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK+S ++    I  +S +            ++  +  L+           +    
Sbjct: 117 VAGTHGKTSTSTMCAHIMHQSHVECNAF-LGGISKNYGTNYILS--DSSDFVVIEADEFD 173

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           +                     +       T+   DH+D + T++        L      
Sbjct: 174 RSFHW-----------------LSPWMTVITSTDPDHLDIYGTKE------AYLESFRHY 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            E      A   ++   MK     G +  +        H + +     +         ++
Sbjct: 211 TELIRPGGALIIHTDLEMKANVQDGVKTYTYSRDKGDFHAENIVIEDGEITFDFVSPIEN 270

Query: 300 FDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              + P  P    + N + A  +    G  +  +   +E    V  RF+F    +     
Sbjct: 271 ITGIKPGHPIPINIENGVAAMAMAQLNGCTANELKYGMETYRGVDRRFDF-KVRNDKHVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVT 416
             DYAH    +    K+++ +   R I          R +              D  I+T
Sbjct: 330 LTDYAHHPKEILQSAKSLKELYGNRKITAIFQPHLYTRTRDFYQDFANSLSHF-DEVILT 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           D  P  E P      + I   I  G+    I K +  + ++         DVLV+ G G 
Sbjct: 389 DIYPAREQPIPGITSKIIFDNIKPGVEKQMIRKEDFPDFVKN-----RDFDVLVILGAGD 443

Query: 470 -ETV-----HIVTNGE 479
            E        I+   +
Sbjct: 444 LENYATQIAQIIEKRK 459


>gi|227356149|ref|ZP_03840538.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Proteus mirabilis ATCC 29906]
 gi|227163613|gb|EEI48529.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Proteus mirabilis ATCC 29906]
          Length = 445

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 100/378 (26%), Gaps = 35/378 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ V+GT+GK +    ++ I   SGL          +    +           L+
Sbjct: 60  RPAPKVITVSGTNGKGTTCHMLESILMASGLKVGVYSSPHLVRYTERVRIQGK----ELS 115

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A        +     + S    +   L  +KL   +  ++    +       A      
Sbjct: 116 PADFCQVFAEIEQTRGDISLTFFEYGTLAALKLFQQAQLDVVILEVGLGGRLDATNIVDA 175

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---------------F 276
            +                D       K           VG                   F
Sbjct: 176 DIAAITSIALDHTDWLGADREHIGHEKAGIFRKNHYAVVGEPDMPLSIAQVAQQKQAKLF 235

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                     +          K F+ L             +A   C+    D        
Sbjct: 236 RRGVDWSFSIDGDHWHWRSADKQFEKLPIPNIPLANAGTAMAVIRCLLKSDDKVSQGITH 295

Query: 337 EKLHVVPGRFE---FVGTNSRGGRIYVDYAHTSNS---LEMILKNIRTITSGRIIVVFGC 390
           + +     + +        S+   +  D AH  ++   L   L  +   +  ++ +V G 
Sbjct: 296 QSIVEGMSKAQLPGRFQIISQHPLVIFDVAHNPHAAGYLAEKLAQLPRYSDTKVRIVVGM 355

Query: 391 GGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            GD+D       G +A     AD   V    P +E        +   +       +  +A
Sbjct: 356 LGDKDIA-----GTLACLSPQADQWYVA---PLNEFRGASAQVLAQHLDYPAVFDSVEQA 407

Query: 449 IRTAIEMLNKQDVLVVAG 466
            + AI    K D++VV G
Sbjct: 408 WQQAISEAQKNDIVVVCG 425


>gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 449

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 117/346 (33%), Gaps = 42/346 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GKS+V + V  I ++SGL +F  G   T    + + R                
Sbjct: 111 VGITGTNGKSTVTTMVGHIAKKSGLKTFIGGNLGTPLISSINER---------------- 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    VE SS  L             S  N+ +DH+DYH+       A  +L    
Sbjct: 155 ----FDVYVVEVSSFQLTWFGKKEKYFHLSSILNIAQDHLDYHRDM--REYALAKLKIIE 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L   S  I         +++           S      F     +  +H         + 
Sbjct: 209 LTSGSSIINSEILENFGDLLVDKTKKQIIPFSTRKDSFFCLKDGIMRLH---------KL 259

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                    PG     NA +  GL   +GI     LE L+    +  R +  G  +    
Sbjct: 260 SISLDSLNFPGIHNQENAAITLGLAQFLGIHVHDALEKLQDYAFLDHRMQKCGQINGVTF 319

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I    A  ++    ++  +      ++I++      R+    P++ KI+       I   
Sbjct: 320 INDSKATNAH---AVINALENFDLEKVIIILSGKEKRE-DYTPLIKKIS--RVKHIIFLG 373

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+ +S     I      GI  +       EA++ A+E+    D+++
Sbjct: 374 DSLKS----LIERLKKKGIT-YDVVHTIDEALKKAVELSKAGDIVL 414


>gi|83589692|ref|YP_429701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
           thermoacetica ATCC 39073]
 gi|118595666|sp|Q2RK81|MURD_MOOTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83572606|gb|ABC19158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
           thermoacetica ATCC 39073]
          Length = 455

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 93/282 (32%), Gaps = 17/282 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +V  E SS  L+   +        +  N+  DH+D H + + Y  AK R+          
Sbjct: 159 YVVCEVSSFQLEA--ITSFHPQVAAILNITPDHLDRHGSLENYIAAKARVMAY-QEARDF 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AI+  DD +++ +   A +                L+      +                
Sbjct: 216 AILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDGVICCDLGAGGTVKLC--HCEE 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G   + N++ AA + +A+G+D   +   L+    VP R E V   +    I     
Sbjct: 274 LSLKGSHNLENSMAAALVALALGVDPEQLTRTLKTFPAVPHRLEPVAEINGVCYINDSKG 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +    +           +V+   G ++      +  ++A  +  + +V       E
Sbjct: 334 TNPEATMKAINAYSN-----PLVLIAGGRNKGSDFTLLAQQMAGRVKHLVLV------GE 382

Query: 424 DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++       GI       +   A+R A       D++++
Sbjct: 383 AARELEQAARKAGIDSIYLAPDFASAVREAAGAARPGDIVML 424


>gi|297530715|ref|YP_003671990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
 gi|297253967|gb|ADI27413.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
          Length = 451

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 117/364 (32%), Gaps = 47/364 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + + ++ +  G      G    ++         
Sbjct: 104 ELAYHISEGP---FIGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGLVACEV------ 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          ++    +  E SS  L    +D  +       N+   H+DYH T+
Sbjct: 155 ------------AREAKPGQWLVTELSSFQLA--GIDKFRPAIAVLLNIFDAHLDYHGTK 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK  +F     ++  A++ ADD     +     +      +    G+  +++   
Sbjct: 201 EAYAAAKANIFRNQTERD-YAVVNADDPLVMNIASSVRSQKVLFSATKLLGEGAYVQDGA 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                     + +         LPG+  + N L A       G     + + L     V 
Sbjct: 260 IYW-------NGDPVIRIADIVLPGQHNLENILAAVAAAKLAGASDEAIRQVLATFSGVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R ++V             A    + +  L       +G  +++   G DR      ++ 
Sbjct: 313 HRLQYVAEIDGRRFYNDSKATNILATQKALSAF----AGEPVILLAGGLDRGNEFDDLLP 368

Query: 404 KIALDLADIAIV---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +        ++   T D        +I      GI       N  +A+  A E+    D
Sbjct: 369 YL--QQVKAVVLFGQTAD-----KIGRIAQ--KAGIETIRYVDNVEKAVPVAFELSEPGD 419

Query: 461 VLVV 464
           V+++
Sbjct: 420 VILL 423


>gi|261419315|ref|YP_003252997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. Y412MC61]
 gi|319766131|ref|YP_004131632.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
 gi|261375772|gb|ACX78515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC61]
 gi|317110997|gb|ADU93489.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
          Length = 451

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 117/364 (32%), Gaps = 47/364 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + + ++ +  G      G    ++         
Sbjct: 104 ELAYHISEGP---FIGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGLVACEV------ 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          ++    +  E SS  L    +D  +       N+   H+DYH T+
Sbjct: 155 ------------AREAKPGQWLVTELSSFQLA--GIDKFRPAIAVLLNIFDAHLDYHGTK 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK  +F     ++  A++ ADD     +     +      +    G+  +++   
Sbjct: 201 EAYAAAKANIFRNQTERD-YAVVNADDPLVMNIASSVRSQKVLFSATKLLGEGAYVQDGA 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                     + +         LPG+  + N L A       G     + + L     V 
Sbjct: 260 IYW-------NGDPVIRIADIVLPGQHNLENILAAMAAAKLAGASDEAIRQVLATFSGVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R ++V             A    + +  L       +G  +++   G DR      ++ 
Sbjct: 313 HRLQYVAEIDGRRFYNDSKATNILATQKALSAF----AGEPVILLAGGLDRGNEFDDLLP 368

Query: 404 KIALDLADIAIV---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +        ++   T D        +I      GI       N  +A+  A E+    D
Sbjct: 369 YL--QQVKAVVLFGQTAD-----KIGRIAQ--KAGIETIRYVDNVEKAVPVAFELSEPGD 419

Query: 461 VLVV 464
           V+++
Sbjct: 420 VILL 423


>gi|332361772|gb|EGJ39576.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1056]
          Length = 459

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 131/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNDMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEAFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +   A     +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQAAVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQAAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+    PR       RA    G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAPR-----VKRAADQAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A       D++++
Sbjct: 403 VS-YLDATDVWDAAHKAFAQAEPGDIVLL 430


>gi|197285644|ref|YP_002151516.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Proteus mirabilis HI4320]
 gi|194683131|emb|CAR43714.1| FolC bifunctional protein [includes: folylpolyglutamate synthase
           and dihydrofolate synthase] [Proteus mirabilis HI4320]
          Length = 432

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 100/378 (26%), Gaps = 35/378 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ V+GT+GK +    ++ I   SGL          +    +           L+
Sbjct: 47  RPAPKVITVSGTNGKGTTCHMLESILMASGLKVGVYSSPHLVRYTERVRIQGK----ELS 102

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A        +     + S    +   L  +KL   +  ++    +       A      
Sbjct: 103 PAEFCQVFAEIEQTRGDISLTFFEYGTLAALKLFQQAQLDVVILEVGLGGRLDATNIVDA 162

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---------------F 276
            +                D       K           VG                   F
Sbjct: 163 DIAAITSIALDHTDWLGADREHIGHEKAGIFRKNHYAVVGEPDMPLSIAQVAQQKQAKLF 222

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                     +          K F+ L             +A   C+    D        
Sbjct: 223 RRGVDWSFSIDGDHWHWRSADKQFEKLPIPNIPLANAGTAMAVIRCLLKSDDKVSQGITH 282

Query: 337 EKLHVVPGRFE---FVGTNSRGGRIYVDYAHTSNS---LEMILKNIRTITSGRIIVVFGC 390
           + +     + +        S+   +  D AH  ++   L   L  +   +  ++ +V G 
Sbjct: 283 QSIVEGMSKAQLPGRFQIISQHPLVIFDVAHNPHAAGYLAEKLAQLPRYSDTKVRIVVGM 342

Query: 391 GGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            GD+D       G +A     AD   V    P +E        +   +       +  +A
Sbjct: 343 LGDKDIA-----GTLACLSPQADQWYVA---PLNEFRGASAQVLAQHLDYPAVFDSVEQA 394

Query: 449 IRTAIEMLNKQDVLVVAG 466
            + AI    K D++VV G
Sbjct: 395 WQQAISEAQKNDIVVVCG 412


>gi|169350228|ref|ZP_02867166.1| hypothetical protein CLOSPI_00972 [Clostridium spiroforme DSM 1552]
 gi|169293011|gb|EDS75144.1| hypothetical protein CLOSPI_00972 [Clostridium spiroforme DSM 1552]
          Length = 436

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 84/274 (30%), Gaps = 17/274 (6%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q              N+  DH+DY    + Y  +  +   +    +   I++ DD     
Sbjct: 154 QDHFLHYYPNYAIINNIELDHVDYFGNLERYIESFEKFANQ---VKDTVIVWGDDPN--- 207

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K           +        +  +                   F  P  G   +YN+
Sbjct: 208 IKKINFEKRVMRFGLNDYNDVRAVNVIENNLGFSFDVYIHNELFGHFNLPFFGNHMLYNS 267

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    L     +DS  + + L        R+              DYAH   +++ +++ 
Sbjct: 268 LAIITLGYLENMDSEYIQDKLSTFQGTKRRYSVT--EVGNNIYVDDYAHHPTAIKYVIEA 325

Query: 376 IRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVT--DDNPRSEDPEKI-RA 430
            R    G+ IV         +G R      + A+DLAD        +N   E+   I   
Sbjct: 326 TRVRYPGKKIVAVFKPDRFSRGARFAVEFAR-AMDLADYPYFCPFPENAVKEEGIDIDIY 384

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +I   +P         EA   A E+    DV+ +
Sbjct: 385 DIAKNLPRAKVINEDQEA---AKELAQYDDVVFL 415


>gi|260462091|ref|ZP_05810335.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031951|gb|EEW33218.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
          Length = 468

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 97/283 (34%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +      A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPAEIAVVTNIDPEHLDHYGSFDKVREA-FRQFVENVPFYGFGVMCTDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNA 315
           +          Q          A    +   +    K            P+PG   V NA
Sbjct: 232 DRRVITYGENAQADVRFTNHRMAGAISEFDVVIRNRKTGGQTAISDLRLPMPGRHNVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +G+ +  + + L     V  RF   G +  G  ++ DY H    +  +LK 
Sbjct: 292 TAAIAVAHELGLSAEAIKKGLSSFAGVKRRFTHTG-SWNGVDVFDDYGHHPVEIAAVLKA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R+ T GR+I +      R      +  + +     AD  +V       E+P      ++
Sbjct: 351 ARSATKGRVIAI--AQPHRFTRLHDLFNEFSACFNDADTVMVAPVYAAGEEPIDGVTSDE 408

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
           + + I  G            AI   I ++    D +V  G G+
Sbjct: 409 LVSRIRAGGHRDARYIEGPAAIAPVIRDLAKPGDFVVFLGAGN 451


>gi|317508857|ref|ZP_07966496.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Segniliparus rugosus ATCC BAA-974]
 gi|316252818|gb|EFV12249.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Segniliparus rugosus ATCC BAA-974]
          Length = 494

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 146/457 (31%), Gaps = 53/457 (11%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            DSR +  G +F+A+ G + DG                 + A       A+   + P +V
Sbjct: 33  HDSRKVVPGGLFLAVPGERTDGR-----------AHAASAHAAGAVATLASDPLDVPTVV 81

Query: 95  V---------DNTRKFLSLFASRLYGK-------HPENILAVTGTSGKSSVASFVQQICQ 138
           +         + +++      + L              I+ VTG+SGK+S    + Q+  
Sbjct: 82  LGEGPYPTPPEESKRLALAAVAALAKANAEALVAQGLTIVGVTGSSGKTSTKDLLAQVLA 141

Query: 139 RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR 198
             G +    G  +             P  ++L              + + A   G     
Sbjct: 142 TKGSTVGPPGSYNNELGHPWTVLRAGPESVFL-------------VLELAARGIGHIAAL 188

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA--KMRLFEELLPKESPAIIYADDAYSKEV 256
               +   G    +G  H+    +++    A  ++            A++ ADD     +
Sbjct: 189 ARIARPRIGVVLGVGSAHLGEFGSRENIAIAKGELVEALPSAEDGGVAVLNADDPLVLAM 248

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             R      R              +V A+  + + T+     +      + GE Q +NAL
Sbjct: 249 AARTKARVVRYGMSESAEIRAADVRVDALA-RPRFTLITPQGEAPVELQVHGEHQAHNAL 307

Query: 317 VAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            AA + +  G+  A   E L +     P R +          I   Y     S+   L+ 
Sbjct: 308 AAAAVALECGLSVAQTAEALSRARAASPRRMQVTERADGAVVINDSYNANPESMRAGLRA 367

Query: 376 IRTITS---GRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +     G    V G     G+        +G+ A+ L+   ++   + RS       
Sbjct: 368 LVDMADNSGGVSWAVLGPMGELGEDSIALHDQLGRYAVRLSVKRLLVVGDSRSAKALH-T 426

Query: 430 AEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++ G          +  +A R   + L  +DV++V
Sbjct: 427 GAVLEGSWSGEAELVSDWSQAARIVADELGPRDVVLV 463


>gi|317154475|ref|YP_004122523.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944726|gb|ADU63777.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 480

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 134/419 (31%), Gaps = 54/419 (12%)

Query: 59  FIPQ-AIAQG-AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKH 113
           FI   A   G A+ ++ S+A   ++    A      PI+     R   L+       G  
Sbjct: 72  FIGHGAANLGEADVLIKSTAIPDKNPELVAARGRGIPII----PRAEMLAELMRLRTG-- 125

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  S +  I   +GL    I     ++++  + RL     +     
Sbjct: 126 ----VAIAGTHGKTTTTSLLATIFTEAGLDPTVI-IGGKLNTYGANARLGGGDYLIAEAD 180

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  I    TN+ +DH+D++  Q A  +A  R 
Sbjct: 181 ESDGSFLL--------------------LSPIISVVTNVDKDHMDFYADQDAIDDAFTRF 220

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +       +   DD   + ++                     +         +    
Sbjct: 221 MNSIPFYGMNVV-CGDDEGVQRLLPTIKRPCLTYGLGPKNRLRGEIITSHLRSLFRVFLD 279

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +     P      V NAL   G+ +  G+D   ++  L     V  RFE  G   
Sbjct: 280 GQPWGEVTVAQPGI--HNVQNALACIGVALEAGLDKEDIVNGLANFGGVGRRFERKG-ER 336

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
           +G  +  DY H    +   L+  R     R +VV      R    + + G+       AD
Sbjct: 337 KGVLVVDDYGHHPAEIIANLRTARACYPDRRLVV-AFQPHRFTRTQALFGEFCKAFTDAD 395

Query: 412 IAIVTDDNPRSEDPEKIRA--EIIHGIP-----GFIEKGNRI--EAIRTAIEMLNKQDV 461
           + ++T+  P SE P    +   +  GI            +    EA     + L   D+
Sbjct: 396 LLLLTEIYPASESPIPGVSGLSLAQGIKQVSDTKVQFFPDFESLEA--RLADTLRPGDL 452


>gi|259907207|ref|YP_002647563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae Ep1/96]
 gi|224962829|emb|CAX54288.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477016|emb|CAY72908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae DSM 12163]
          Length = 450

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 103/360 (28%), Gaps = 38/360 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++AV GT GK++ A     I Q  G    F IG        + +   +    I   +
Sbjct: 102 DRWVIAVAGTHGKTTTAGMTAWILQACGYEPGFVIGGVPGNFEVSANLGKSPFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D +   +A       
Sbjct: 162 YDCAFFDKRAKFV---------------HYCPRTLILNNLEFDHADIYDDLRAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+  + GC               K  +        
Sbjct: 202 KQFHHLVRIVPGQGKIILPEHDANLKQMMSMGCWSEHEAVGENGCWQVKKLSPDASCWEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +  +  + L GE  + N ++A      +G+        L        R E  G  
Sbjct: 262 MLDGERVAEVNWSLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------K 404
           S G ++Y D+AH   ++   L  +R    G  RI+ V        +     MG       
Sbjct: 321 SNGIKVYDDFAHHPTAIHATLAALRGKVGGTARILAVLEP-----RSNTMKMGISKDDLA 375

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AL  AD   +   +       ++    I       +    +EAI       +  D ++V
Sbjct: 376 PALGRADEVFLYQPHHIPWQVSEVADACIQPAHWSADIDTLVEAIAKV---AHPGDTILV 432


>gi|218961974|ref|YP_001741749.1| FolC bifunctional protein [Includes: Folylpolyglutamate synthase
           (Folylpoly-gamma-glutamate synthetase) (FPGS)
           (Tetrahydrofolylpolyglutamate synthase); Dihydrofolate
           synthase] [Candidatus Cloacamonas acidaminovorans]
 gi|167730631|emb|CAO81543.1| FolC bifunctional protein [Includes: Folylpolyglutamate synthase
           (Folylpoly-gamma-glutamate synthetase) (FPGS)
           (Tetrahydrofolylpolyglutamate synthase); Dihydrofolate
           synthase] [Candidatus Cloacamonas acidaminovorans]
          Length = 426

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/378 (15%), Positives = 117/378 (30%), Gaps = 34/378 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY--LAKA 173
           N   + GT+GK SV + ++ +C+ SGL++        I+   +             L   
Sbjct: 40  NGFHIGGTNGKGSVCATLEALCRESGLNTALNTSPHLINYNERFRINGKEPSFETILNTF 99

Query: 174 LSYLSSQGVTHVSVEASSHGLDQ------------------HRLDGIKLIAGSFTNLGRD 215
           L Y +       S    +  L                     RLD   L       +   
Sbjct: 100 LRYENLFDKWEASFFEITTALAFSMFSEHNVDVSIIEVGLGGRLDATNLFIPDVAVITNI 159

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
            +D+ +T              ++ +  P ++   +   + +++         +    +  
Sbjct: 160 GLDHIKTLGGTLEIIAGEKAGIIKEGIPLVLGDIEESPRSIIEAVAKTKKVPVFRYKRDW 219

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-----A 330
              ++           +     +  +    L GE Q  N   A    I            
Sbjct: 220 QTSIRNDNLTGINFDYSFG-NYEFPNLEANLMGEHQAINIGSALTAFILYAEKKKLPVAE 278

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFG 389
            V+    +     GR + +   S+   I +D AH  + ++ ++  +  I   R +  +  
Sbjct: 279 EVIRKALQHISWKGRMQLL---SQKPIIIIDGAHNVHGVKALMSTLEKIFPNRKVKFMVS 335

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
              D+D      M  +    A+   V  + + R+   E   A I      +       EA
Sbjct: 336 ILRDKDY---KQMLSLICPKAEQIYVARNQSERAASVEDQVAVIEEYNIPYKTAPTVAEA 392

Query: 449 IRTAIEMLNKQDVLVVAG 466
              A++   + D+L+V G
Sbjct: 393 YSLAVKECKEDDILIVCG 410


>gi|317496809|ref|ZP_07955139.1| FolC protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895821|gb|EFV17973.1| FolC protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 424

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 135/408 (33%), Gaps = 44/408 (10%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L +DN ++ L    +    +    ++ + GT+GK S  +F+  I + SG  + +    +
Sbjct: 19  VLGLDNIKELLERLGN---PQDQLKVVHIAGTNGKGSTLAFLAGIFRESGYRAGRYVSPA 75

Query: 152 TISSFAQDNRLTTPSPIYLAKAL--------SYLSSQGVTHVSVEASSHGLDQ------- 196
           +     +                          +   G++H ++      L         
Sbjct: 76  SFCYEERFRINEENISKEDLCFYMEKIKKISDEMVRDGMSHPTMFEIETALSFLYFLDKK 135

Query: 197 -----------HRLDGIK----LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                       RLD        IA    ++G DH+ +         A+     +     
Sbjct: 136 VDVVLLETGMGGRLDATNVVKKPIAVIIASIGMDHMQFLGDTIEKIAAEKAGIIK--EGC 193

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                   ++ ++ + ++A    C+V  V  +G  +  + +       + +     +  +
Sbjct: 194 PVISYNNQESVNEVIKEKAKEMHCKVTFVNSEGIRVLSESLNGESFSYRSSDGRWYEKIE 253

Query: 302 FLFPLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                  +      AL A          S    E   +  +  GR E +    +   +  
Sbjct: 254 IPLLGRHQINNAALALEALNTIRNYYCISEFQTEDGLRKTIWRGRIEIL---EKDPLVIC 310

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDD 418
           D AH  +  + +L  ++   T+ R+I + G   D+D      M +I   +A     V  D
Sbjct: 311 DGAHNPDGAKSLLNFLQNNFTNRRLIYIMGVLSDKDYE---QMIQILTPMAAKVYTVAPD 367

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           N R+   + +   I        E+    E +    +  +K+DV+++ G
Sbjct: 368 NARALSSKDLAECIRKYHHDVEERQRLKECLEEVKQQADKEDVIIICG 415


>gi|310830391|ref|YP_003965492.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309249858|gb|ADO59424.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 459

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 139/413 (33%), Gaps = 43/413 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V S+A S  +          I     T     + A  L  +     +AV G  G
Sbjct: 62  AGADIVVYSTALSRDNVERVAAEELNIP----TLHRSQMLARLLNER---KGIAVAGAHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  + +R  +                   +       L        S+ V   
Sbjct: 115 KTTTSSMIALVMERCNVD---------------PTYIIGGEITNLGTNAKAGKSEFVVAE 159

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           + E+    L  H   GI       TN+  DH++ +        +    F   +  +  AI
Sbjct: 160 ADESDGSFLQYHPWQGI------VTNIEADHLENYDGDFNRLKSAYVQFLGQIQPDGAAI 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
           + ADD   +E++ +                      +     +   T++ +G        
Sbjct: 214 VCADDQNIQEMLPQLQTRVITYGIEHEADYM--ATDIQLGDRRLSFTMNRKGTALGTIEL 271

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG+  VYNA+     C+  GI    +   + + H    RF+ +G       +  DYAH
Sbjct: 272 SVPGKHNVYNAMATVISCLEAGIPFEQIAATIVEFHGAKRRFQVIGDLH-DVLVVDDYAH 330

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPRS 422
               +   L+  ++ T  RI+ VF      R         +   D AD  I+ D  +P  
Sbjct: 331 HPTEIIATLQAAKS-TGKRIVAVFQPQRYTRTYFLLDQFSRAFSD-ADEVIIPDIYSPAG 388

Query: 423 E------DPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E      D +K+   I            ++ E     ++ +   D+++  G G
Sbjct: 389 EKRIEGIDSQKLVELIKTNSNKNAKYLPSKDEISSYLLDAVKPGDIVITMGAG 441


>gi|237749171|ref|ZP_04579651.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
 gi|229380533|gb|EEO30624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
          Length = 495

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 130/366 (35%), Gaps = 37/366 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +  +++AVTGT+GK++V S    +C+R+G +    G               +P+ + +  
Sbjct: 117 YKPDVIAVTGTNGKTTVTSLTGHMCERAGKTVRLAGNI-------------SPAALDVLL 163

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +            +E SS  L       ++  A +  NL +DH+D+H + +AY  AK R
Sbjct: 164 DVIEKKQLPD-VWVLELSSFQLFT--TYTLQANAATVLNLTQDHLDWHGSMEAYGEAKAR 220

Query: 233 LFEELLPKE-------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           +F E   +           +  AD                  L +    +++ +      
Sbjct: 221 IFGEKTVRVLNREDAAVMKMASADAPVVTFGTDEPLEPSSFGLHLDRDMEWLAVMSPVED 280

Query: 286 HNKQQVTISVEGKDFDFLFPLPG-------EFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              ++   +    ++     +P             NAL A  LC AI +  A +L+ L  
Sbjct: 281 GIVRRNKKNDAPLEYAVQNLMPAGALKIRGRHNASNALAALALCRAIHLPFAPLLQALSD 340

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R E + T      I         +    +  +       II++ G  G +DQ  
Sbjct: 341 YRGEPHRVELIATVKTVSYIDDSKGTNVGATVAAVNGLGEKGRKNIILIAGGLG-KDQDF 399

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            P+  ++        ++       +D  +I   +      F+   +   A+  A +M   
Sbjct: 400 SPL-SEVVAQYVKAVMLI-----GKDARQIHDALAETGASFVYSDSLEHAVGEAAKMAQD 453

Query: 459 QDVLVV 464
            D +++
Sbjct: 454 NDTVLL 459


>gi|71275121|ref|ZP_00651408.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|170731110|ref|YP_001776543.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M12]
 gi|229620438|sp|B0U4Z6|MURC_XYLFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71163930|gb|EAO13645.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|167965903|gb|ACA12913.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M12]
          Length = 477

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 142/418 (33%), Gaps = 49/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+      +G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRHG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  +    G   +F IG                     L  A +         
Sbjct: 126 KTTTTSLIAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGAGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        RL+ +       TN+  DH++ +    +        F + LP    A
Sbjct: 167 LVVEADESDGSFLRLNPLV---AVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           ++  DD    E+  +A      +         +  + V     +   T+ +         
Sbjct: 224 LLCLDDPEVAELAGKARRH--VMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKVIPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360
             LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    V   
Sbjct: 282 LALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLI 341

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSSVDALVLSE 400

Query: 418 DNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             P  E      D + +   I   G    +  G     I    ++L + D+L++ G G
Sbjct: 401 VYPAGEVPIPGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGAG 458


>gi|160915597|ref|ZP_02077808.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
 gi|158432717|gb|EDP11006.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
          Length = 440

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/396 (14%), Positives = 135/396 (34%), Gaps = 47/396 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
            ++ + Y+    +  I+   PI+   V++     +         +     A+TGT+GK++
Sbjct: 57  CLLHTDYAFVVKNPGIKYTVPIVRYFVEHEIAIYTEIEIAYRYANGFRYGAITGTNGKTT 116

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           + + + ++ ++ G  +   G      S                   +      V  V++E
Sbjct: 117 ITTMLYEMLKKKG-QAIVAGNIGYPLSEL-----------------ALRYEDEVKDVALE 158

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S+  L    ++          NL  DH+DY  + ++Y+ +KMR++E         +   
Sbjct: 159 LSNFQLL--GIEQFAPTVSVVCNLAPDHLDYMPSVESYYASKMRIYENCKEDAWF-LRNL 215

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD    E  K                            +             +    L G
Sbjct: 216 DDPIVMEYAKNIPCKVIDFSLTRKNCPLHRANGKVYFEDVVLFE--------EKSLALKG 267

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           ++ + NA++AA +   +G+    +   + +   V  R E++G            A  +++
Sbjct: 268 DYNLSNAMIAACMAYRLGVSCEDIQTVIAQFQPVEHRMEYIGEKRGVKFYNDSKATNTHA 327

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E  L         + I++   G D+    + +          + I            + 
Sbjct: 328 VEAAL-----HCFDKNIILLAGGHDKGISFQEL--SAYDKRIKLCI---------AFGET 371

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + + ++       +     A+ TAIE  ++ DV+++
Sbjct: 372 KDQFVNVFSHVETRETMQAALTTAIEKASEGDVILL 407


>gi|197303947|ref|ZP_03168979.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
 gi|197296915|gb|EDY31483.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
          Length = 458

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 79/275 (28%), Gaps = 10/275 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH+D+ +  +   ++    F  LLP +   II  D    +E+ +  
Sbjct: 176 HFYPKISVILNIEEDHLDFFKDLEDIRHS-FHQFSALLPSDGTLIINGDIKDYQEIYEGL 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   S           +           +            + G+  V NAL A  
Sbjct: 235 DCNVITYGSSAEFDYSATEIQYDEKGFVSFELLKHNTSCGRVQLSVTGDHNVSNALAAIA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +GI    + + L        RFE+ G    G  +  DYAH    +   LK  +   
Sbjct: 295 TAELLGIPMDTIRKGLLSFSGTDRRFEYKG-TFNGVTVVDDYAHHPTEIAATLKAAQHYP 353

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
              I  VF      R +       + AL   D  ++ D     E          +  E  
Sbjct: 354 HNEIWCVFQPHTYTRTKAFFHEFAE-ALSHTDHLVLADIYAARETDTLGISSSDLAKEAA 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +  E      E     D+L+  G G
Sbjct: 413 KLGTDTHYYPSFAEIEAFLKENCKSGDLLITMGAG 447


>gi|15837400|ref|NP_298088.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa 9a5c]
 gi|23821887|sp|Q9PF80|MURC_XYLFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9105694|gb|AAF83608.1|AE003919_19 UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa 9a5c]
          Length = 477

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 143/418 (34%), Gaps = 49/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+      +G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRHG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  +    G   +F IG                     L  A +         
Sbjct: 126 KTTTTSLIAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGAGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        RL+ +       TN+  DH++ +    +        F + LP    A
Sbjct: 167 LVVEADESDGSFLRLNPLV---AVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           ++  DD    E+  +A      +         +  + V     +   T+ +         
Sbjct: 224 LLCLDDPEVAELAGKARRH--VMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360
             LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    V   
Sbjct: 282 LALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLI 341

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +   +R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAVRGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSSVDALVLSE 400

Query: 418 DNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             P  E      D + +   I   G    +  G     I    ++L + D+L++ G G
Sbjct: 401 VYPAGEVPIPGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGAG 458


>gi|330815444|ref|YP_004359149.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367837|gb|AEA59193.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 136/442 (30%), Gaps = 66/442 (14%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLF 105
           VAI      GH      I  GA A+VVS+A    +          + +V   R   L+  
Sbjct: 53  VAI------GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVP--RAVMLAEL 101

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
                G      +A+ GT GK++  S V  +    G   +F IG    + S   + RL +
Sbjct: 102 MRLKQG------IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGS 153

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              I      S  S                       +  +    TN+  DH+D +    
Sbjct: 154 GDFIVAEADESDASFLN--------------------LYPVIEVITNIDEDHMDTYGHDF 193

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A        F + LP    A++  DD   ++++        R                  
Sbjct: 194 ARLKQAFIEFTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAEVRAEQVDAR- 252

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                   I         +  LPG   V NAL A  +   +G+  A + + L   + V  
Sbjct: 253 DGRMHFTVIRDGLAPLRVVLNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGR 312

Query: 345 RFEFVGT----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           RF+  G     +     +  DY H    +   +   R    GR  +V      R    R 
Sbjct: 313 RFQRYGELAAADGGSYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRD 371

Query: 401 IMGKIALDLA--DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE----------- 447
                   L+  D  ++T+     E    I       +   + +  R++           
Sbjct: 372 CFEDFVNVLSTVDALVLTEVYAAGE--AAIPTASGEALSRALREIGRVDPSFVAGVDEVP 429

Query: 448 -AIRTAIEMLNKQDVLVVAGKG 468
            A+   +      DV++  G G
Sbjct: 430 AALARVV---RAGDVVITMGAG 448


>gi|315084589|gb|EFT56565.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA2]
          Length = 471

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VVTNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGR 383
           GI    +L  +        RF+ VG       ++ DYAH    L + L   R +    GR
Sbjct: 305 GISHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRVTLGAARRVVTGQGR 363

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGI 436
           +I  F      R +      G  AL LAD  IV+D  P  EDP      E +   +I   
Sbjct: 364 VIACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAG 422

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  ++ +      E +   D+++  G G
Sbjct: 423 GDSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|317132444|ref|YP_004091758.1| FolC bifunctional protein [Ethanoligenens harbinense YUAN-3]
 gi|315470423|gb|ADU27027.1| FolC bifunctional protein [Ethanoligenens harbinense YUAN-3]
          Length = 428

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRP 400
            P R E +        + +D AH +     +   +R    GR +  V G   D+D     
Sbjct: 288 FPARLERLHDKPL---VLLDGAHNAAGTAALADAVRRYLPGRPVTTVMGMLADKDYA--A 342

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +G IA   A    V  D+PR+ DP +            +   +  +A   A+     + 
Sbjct: 343 GVGNIAPLSARFIAVRPDSPRALDPRETARTASAFCANTVFFDDLGDAFADALAHTGAEG 402

Query: 461 VLVVAG 466
           VL++ G
Sbjct: 403 VLLICG 408


>gi|15889377|ref|NP_355058.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium tumefaciens
           str. C58]
 gi|23821880|sp|Q8UDM9|MURC_AGRT5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15157227|gb|AAK87843.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium tumefaciens str.
           C58]
          Length = 471

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 89/282 (31%), Gaps = 17/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPGEFQVYNAL 316
                              ++    +   V I        F F     P+PG   V NA 
Sbjct: 233 RKVITYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSFKDLVLPMPGRHNVSNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI  A + + L     V  RF   G  + G +++ DY H    ++ +L   
Sbjct: 293 AAIAVANRLGISEADIKKGLASFAGVKRRFTLTG-EANGVQVFDDYGHHPVEIKAVLAAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R    GRII V      R      +    A     AD  ++       EDP      E +
Sbjct: 352 REACKGRIIAV--HQPHRYSRLSSLFDDFAHCFNDADTILLAPVYAAGEDPIEGASSEAL 409

Query: 429 RAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + I   G         R +       + N  D +V+ G G+
Sbjct: 410 VSAIKAAGHRDARFLEKREDLASQVAAIANPGDFVVLLGAGN 451


>gi|302185271|ref|ZP_07261944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae 642]
          Length = 448

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 121/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T +         
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTPALDLLS---- 153

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               I L                +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 154 --DDIEL--------------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLRQFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A+V        D E I   +   +P  +       A+  + ++  + D ++
Sbjct: 366 APVAKHCRAAVV-----LGRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|291542832|emb|CBL15942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           bromii L2-63]
          Length = 463

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 111/355 (31%), Gaps = 32/355 (9%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G +    G          ++       +
Sbjct: 110 FFDLCPCRIIAVTGSDGKTTTTTIISEFLKAAGFNVHLGGNIGKPLLPEIESVNDDDCAV 169

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             VE SS  L   R           TNL  +H+D H+  Q Y +
Sbjct: 170 ------------------VELSSFQLISMRKS---PDIAVVTNLAPNHLDIHKDMQEYID 208

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K  +        S A++  D+  +    +       +            L      +N 
Sbjct: 209 SKKNIILH-QNAFSKAVLNLDNEITNGFSESVRGQLAKFSVKENVSNGAFLDGDTICYND 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                 +          +PG   V N L A        +D+  +    +    V  R EF
Sbjct: 268 YGKITRIMN---IHDIKIPGMHNVENYLAAISAVWG-LVDAETMTAVAKTFGGVAHRAEF 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +     +   ++      + I +   G D+     P+ G +  D
Sbjct: 324 VREVDGVKYYNDSIASSPTRTALGTLSL----YKQKICIIAGGYDKHIPYEPL-GPVIND 378

Query: 409 LADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              + I+  D  P+ E   K  +         +   N  EA+  A E   K D++
Sbjct: 379 KVKLLILLGDTAPKIEKAVKEASNYDADEIEIVNVTNMEEAVAVARERSTKGDIV 433


>gi|12007718|gb|AAG45237.1| MurD [Pseudomonas aeruginosa]
          Length = 448

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 114/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+A+TG++ KS+V + V ++   +       G   T               +
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +     Y  
Sbjct: 150 DLLADDIEL-------YVLELSSFQLET--CDRLNAEVATVLNVSEDHMDRYDGMADYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA ++ ++           S G          +     +
Sbjct: 201 AKHRIFRGARQ----VVVNRADALTRPLIADT----VPCWSFGLNKPDFKAFGLIEEDGQ 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +              + G     NAL A  L  A+G+    +L  L+    +  R ++
Sbjct: 253 KWLAFQFGKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+  +V   GGD        + +    
Sbjct: 313 VRERQGVSYYDDSKATNVGAALAAIEGLGADIDGK--LVLLAGGDGKGADFHDLREPVAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 371 FCRAVVL-----LGRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|81428361|ref|YP_395361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|122063248|sp|Q38XM9|MURD_LACSS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78610003|emb|CAI55051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 454

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 134/419 (31%), Gaps = 56/419 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASR 108
           + +  A GA  I  S   +L +         P +  DN     +             A  
Sbjct: 49  VAELRALGATVITGSHPVALFEEGFHYLFKNPGIRYDNPMVAEAIKREIPVLTEPELAYE 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFV--QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
           +      + ++VTG++GK++  + +      QR+   ++  G      S           
Sbjct: 109 VSE---ADWVSVTGSNGKTTTTTLIALMLNYQRAQGHAYAAGNIGIPLSEV--------- 156

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                       +     +  E SS  L       +K      TN+   H+DYH T++ Y
Sbjct: 157 ---------AQKATAKDTMVTELSSFQL--MGTTTVKPKVAVLTNIYEAHLDYHGTRENY 205

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AKMR+ +     +   + +      + + ++          +G   +  ++K      
Sbjct: 206 VQAKMRIVQNQTASDYFVVNWDL-PELRTLSQQTKAQVVPFSRLGTSEEGAYVKDGQLC- 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                    E         +PG+  V NAL A      +G  +  ++E L     V  R 
Sbjct: 264 ------FKGEVIMPVTDINVPGDHNVENALAALAAAKLMGQSNEAIIEVLTTFTGVKHRM 317

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           +FV   +         A    + E+ LK+ +       IV+   G DR     P+   + 
Sbjct: 318 QFVKEFAGRRFYNDSKATNMEATEVALKSFKQ-----PIVLIAGGLDRGFTFEPL-TDLL 371

Query: 407 LDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  I+       E  + +       GI          EA+  A     + DV+++
Sbjct: 372 KAHVKAIIL-----YGETKQLLAQTAKEAGIETIEIVDQLTEAVPAAYAASQEGDVILL 425


>gi|194337859|ref|YP_002019653.1| UDP-N-acetylmuramate/alanine ligase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|229620054|sp|B4SH48|MURC_PELPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194310336|gb|ACF45036.1| UDP-N-acetylmuramate/alanine ligase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 479

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 133/428 (31%), Gaps = 52/428 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQD---FSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           GH    Q    G++ +V SSA   +D     A  ++  P++  D   + L       YG 
Sbjct: 57  GHR-AEQV--AGSDVVVYSSAIRAEDNIELIAAEKAGIPVIKRD---EMLGELMRYTYG- 109

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                + + GT GK++  + +  +   S  S   +     IS + +              
Sbjct: 110 -----ICIAGTHGKTTTTAMIATMLIESDESPTVM--IGGISDYLKG------------- 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                      ++ +EA     +  R         +  N                     
Sbjct: 150 ---STVVGEGKYMVIEAD----EYDRAFLKLTPTIAVVNSLESEHMDTYGTLDELKEAFV 202

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   +P     I   D    +++M + +                    +   +     +
Sbjct: 203 AFANKVPFYGRVICCVDWPEIRKIMPKMNRLCTTFGIDEPADVM--AFDIVLDNQHTTFS 260

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           I   G+++      +PG   V NAL A    + +GI    ++  L +   +  RF+    
Sbjct: 261 IKAFGQEYRDVSLQVPGRHNVLNALAAFSTGLELGILPERLIAGLGRYSGMRRRFQVKYD 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409
           N  G  +  DYAH    ++  ++  ++     RI+ VF      R +      G  AL  
Sbjct: 321 NGHGLMVVDDYAHHPTEVKATVRAAKSGWRDSRIVAVFQPHLFSRTREFAHEYG-WALSH 379

Query: 410 ADIAIVTDDNPRSE--------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           AD+  V D  P  E        D E I   +   G        +         E     +
Sbjct: 380 ADMVYVADIYPAREKGVDYPGVDGELIADAVRKAGGKHVEFVADMQNLFTALKEWSVNGN 439

Query: 461 VLVVAGKG 468
           +L+  G G
Sbjct: 440 MLLFMGAG 447


>gi|255692976|ref|ZP_05416651.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621289|gb|EEX44160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 444

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 111/351 (31%), Gaps = 34/351 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I + +G++    G                   + L   
Sbjct: 101 NAKMICITGSNGKTTTTSLIYHIFKSAGMNVGLAGNIGK--------------SLALQV- 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +     +  +E SS  LD   +   +       N+  DH+D +      +      
Sbjct: 146 ----AEDHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFR 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +    +   I + DD     + +     G +     +              ++ ++  
Sbjct: 200 ITQNQTPDDAFIFWNDDPI---IKRELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKINE 256

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          L G+  +YN+L A       GI    + + L     V  R E V    
Sbjct: 257 PIAFNMEQEELALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVEHRLEKVARVR 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A   NS    L+++ T       V+   G D+      I   +    + + 
Sbjct: 317 GIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIEDLVREKCSALV 371

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   N +  D          G+P    +    +A+  A ++  K + +++
Sbjct: 372 YMGLHNEKLHDFFD-----RFGLPVADVQTGMKDAVEAAYKLAKKGETVLL 417


>gi|224541758|ref|ZP_03682297.1| hypothetical protein CATMIT_00930 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525362|gb|EEF94467.1| hypothetical protein CATMIT_00930 [Catenibacterium mitsuokai DSM
           15897]
          Length = 531

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 122/377 (32%), Gaps = 38/377 (10%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
               +     + + GT+GK S  ++ +++ + +G         + ++    D       P
Sbjct: 160 FYDPQTKLTCVHIGGTNGKGSTTNYTKEVLKCAGYKVGTFTSPALVNRL--DIIRVDDEP 217

Query: 168 IYLAKALSYLSSQGVTHVSVEAS----------SHGLDQHRLDGIKLI----AGSFTNLG 213
           I  A  + Y +      ++ E S           + ++Q     +  +        TN+ 
Sbjct: 218 IDEATIVRYANRYMDDWMAYELSKFEIEVFIAVMYFIEQGVDIALFEVGLGGTLDATNII 277

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +  +          +      + +    II     Y     +R            ++
Sbjct: 278 SPILSVNTNIGLDHVNFLGNTYASIARSKAGIIKRGIPYMT--AERRPECLEVFYEEAHK 335

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---A 330
                ++           +IS +   +         +QV N+ +A  +   I  +     
Sbjct: 336 HHSYVIEIRKPKRVYYGASISYDYHGYHIDLSTSAHYQVTNSALAINILEYIRKEFPFKD 395

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             LE      V  GRFE   T  +   I VD AH    ++   ++ R  +  +  ++F  
Sbjct: 396 ADLEKGMHDAVWEGRFE---TIHKNPLIIVDGAHNREGMDAFFESARDFSDIK--IIFSA 450

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            GD+D      M +  L L+    VT  D+PR    +++  +    I       +   A+
Sbjct: 451 LGDKDTHH---MLETLLSLSKDITVTQFDHPRRATAQQLAEDFPVKID-----EDWKHAV 502

Query: 450 RTAIEMLNKQDVLVVAG 466
             A     K  V+ + G
Sbjct: 503 DEAYSH--KG-VVFITG 516


>gi|28209954|ref|NP_780898.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium tetani E88]
 gi|44888201|sp|Q899J1|MURC_CLOTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28202389|gb|AAO34835.1| UDP-N-acetylmuramate--alanine ligase [Clostridium tetani E88]
          Length = 456

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 84/444 (18%), Positives = 144/444 (32%), Gaps = 55/444 (12%)

Query: 50  VGNKEDGHL-----FIPQAIAQGAEAIVVSSAYSLQDFS-----ATIRSNTP-------- 91
            G K  G        I + I  GAE  +   A ++++       A +  + P        
Sbjct: 32  KGYKVSGSDSTKSPIIDKLINLGAEIYIGHKAENIKNVDLIVYTAAVSEDNPELTKALTN 91

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            + + N  +FL            +  +AV+GT GK++  S +  I   + L         
Sbjct: 92  NIKIMNRAEFLGYLMDGH-----KYNIAVSGTHGKTTTTSMMSHITVNANLDPTI--LVG 144

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
              +    N  T  S  +L +A  Y  S       +                       N
Sbjct: 145 GELNIINGNVRTGKSEYFLTEACEYKESFLKFFPYIGV-------------------ILN 185

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +  DH+DY++      NA    F  L+PK+   I  A+D    +++K   +       + 
Sbjct: 186 IDADHLDYYKDINHIKNA-FSKFANLIPKDGYLIACAEDENINDIIK-NIDCTIITYGLN 243

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                                I      F     +PG + V NAL +  +  A+ ID   
Sbjct: 244 KGDIQAKNITFDNKGCASFDVIKNSSVLFSVKLNVPGSYNVLNALASICVSFALNIDKES 303

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-C 390
           +++ LE  H    RFE  G  +    +  DYAH    ++  L   +   S RI+ VF   
Sbjct: 304 IIKGLESFHGTHRRFELKGVRN-DVTVIEDYAHHPTEIKATLSAAKNYPSNRILCVFQPH 362

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR------AEIIHGIPGFIEKGN 444
              R         + +    D  I+ D  P  E    I        ++       I   +
Sbjct: 363 TYTRTYSLFEDFTE-SFYNTDTLILADIYPAREKDTGIVSSDMLGNKLRKKNINCINLHS 421

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKG 468
             +      +     D++++ G G
Sbjct: 422 FEDISDYLKKETKPGDLVLIMGAG 445


>gi|187776916|ref|ZP_02993389.1| hypothetical protein CLOSPO_00455 [Clostridium sporogenes ATCC
           15579]
 gi|187775575|gb|EDU39377.1| hypothetical protein CLOSPO_00455 [Clostridium sporogenes ATCC
           15579]
          Length = 429

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 112/388 (28%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +  I + +G                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISAILKEAGYKVGMYTSPYIEEFEERIQINNYNIPKDDFSHII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANVVEKVGNMGYGNPTEFEIITVAMFYYFCLKK----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    I        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLEKIAYEKAGIIKKAPVIIYPQKKESEKIIEKVCKEKK 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
             ++ V      +  + +     +Q   +  +   ++    L GE Q+ N +V       
Sbjct: 215 SELIKVEDNLINVKREIIQKNIGQQSFKLKTKEDTYNICLSLLGEHQIKNCIVVILAIEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH    +E +  N+ +  
Sbjct: 275 LIKLGIKIEKIYIISALKKVKWPARLEIV---NKNPLTVIDGAHNMEGIEGLKNNVNKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + VT  N R E  +++    +     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVTPHNDRGESSKELMHIALKYNNN 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E          + D++++ G
Sbjct: 389 CEYLEDYKECYNKGKSYYEEGDMILICG 416


>gi|127514072|ref|YP_001095269.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
 gi|126639367|gb|ABO25010.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
          Length = 479

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 114/356 (32%), Gaps = 28/356 (7%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   +
Sbjct: 125 NRWVLAVSGTHGKTSTSSMLAWILEDCGYAPGFLIGGVPQNFGVSARLGDSPFFVVEADE 184

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S    +    V                 +       NL  DH D     +A       
Sbjct: 185 YDSAFFDKRSKFV---------------HYQPRTLVINNLEFDHADIFDDLKAIQRQFNH 229

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +   +  +       A DA  + +         +       G      ++ +        
Sbjct: 230 VIRTVPGQGKVIWPSASDAVREVI--DMGCWSEQETYNLMAGSPGWYSELLSEDGHSFEL 287

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                      + L G+  V NA +A      +G+  A  +E L +      R E +G  
Sbjct: 288 FFDGESQGVLDWSLIGQHNVENATMAIAAARHVGVKPAAAIEALTRFAPPKRRMELIG-T 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGD---RDQGKRPIMGKIALD 408
                +Y D+AH   ++   L+  R  +  GRIIVV     +   R   K  + G +A  
Sbjct: 347 VNDIAVYDDFAHHPTAIATTLQGCRAKVGEGRIIVVLEPRSNTMKRGVHKDTLAGSMA-- 404

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           LAD A +   +    D E   A+    +    +     +++  A       D ++V
Sbjct: 405 LADAAYLYQADNIDWDVEAAMAKAELPVTVLYQIDELADSVTAA---ARPGDTIIV 457


>gi|254282164|ref|ZP_04957132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
 gi|219678367|gb|EED34716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
          Length = 441

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/393 (17%), Positives = 128/393 (32%), Gaps = 48/393 (12%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           VVS   ++            + V+ +   F++             ++ +TG++GKS+V  
Sbjct: 65  VVSPGIAMDHPLVDRALKAGVRVIGDIDLFMAEA--------NAPVIGITGSNGKSTVTE 116

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            V  I + SG +    G   T               + L +  + +         +E SS
Sbjct: 117 MVAAILRASGSAVAVGGNLGTP-------------ALDLLEHPADI-------YVLELSS 156

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+  R + + L   +  N+  DH+D H +   Y  AK           +     AD  
Sbjct: 157 FQLE--RSEKLGLAVATVLNISADHLDRHGSMPRYHQAK---HRIFRGARTVVANRADPL 211

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + ++A     R      +     +     +  +   T++   +      PLPG   
Sbjct: 212 TVPLLEEKADVVVWRDGEPDLREFGTRVVDGEVMLCRGFDTLAAATE-----LPLPGRHN 266

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NAL A  +  A G+D   ++  L+  H +P R   V        I         +   
Sbjct: 267 LANALAAMAVASAAGVDDEQLVPGLKHFHGLPHRCALVRELDGIRFINDSKGTNIGATRA 326

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L+ +     G   VV   GG         +   A        +T      E   +I   
Sbjct: 327 ALEGL----GGNGNVVLIAGGVGKGQDFTELQASAEQRCRRV-LTV----GESAREIELA 377

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +P         +A+    E+    D++++
Sbjct: 378 LGATVP-CQRVETIEQAVTRGRELAKAGDIVLL 409


>gi|60389983|sp|Q6FFC2|MURD_ACIAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 113/351 (32%), Gaps = 42/351 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++ KS+V +   Q+ + +G      G           +    P  + L       
Sbjct: 108 VAITGSNAKSTVTTLFGQMAKDAGKRVAVGGNLGRPGLDLLKDE---PELLVL------- 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E SS  L+      +        N+  DH+D H     Y  AK      +
Sbjct: 158 ----------ELSSFQLET--TSHLNAEVAVILNMSEDHLDRHGDMLGYHQAK----HRI 201

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +   DD+ ++ ++         + S G     I    V    +          
Sbjct: 202 FQGVKKVVYNRDDSLTRPLV----PDSTPMQSFGLNAPDIKQYGVLREDDGTMWLARGRT 257

Query: 298 KDFDFLFPLPG-EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +              + NAL    L  AIG+    +LE L++   +  R E+V T +   
Sbjct: 258 RLIKSSELYIQGTHNIANALACLALGEAIGLPVESMLETLKQFKGLEHRCEYVKTVNDVR 317

Query: 357 RIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                      +    +           G++IV+ G  G + Q    ++ +        A
Sbjct: 318 YYNDSKGTNVGATLAAIDGLGAAIEPKQGKVIVILGGQG-KGQDF-SLLRQSVEKYVKAA 375

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I+       ED ++I  + +      +      +A+  A +    +DV+++
Sbjct: 376 ILI-----GEDAQQI-EQALTETTQLVHASTLKDAVTQAQQYAQPEDVVLL 420


>gi|50083547|ref|YP_045057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           sp. ADP1]
 gi|49529523|emb|CAG67235.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ADP1]
          Length = 455

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 113/351 (32%), Gaps = 42/351 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++ KS+V +   Q+ + +G      G           +    P  + L       
Sbjct: 115 VAITGSNAKSTVTTLFGQMAKDAGKRVAVGGNLGRPGLDLLKDE---PELLVL------- 164

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                     E SS  L+      +        N+  DH+D H     Y  AK      +
Sbjct: 165 ----------ELSSFQLET--TSHLNAEVAVILNMSEDHLDRHGDMLGYHQAK----HRI 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  +   DD+ ++ ++         + S G     I    V    +          
Sbjct: 209 FQGVKKVVYNRDDSLTRPLV----PDSTPMQSFGLNAPDIKQYGVLREDDGTMWLARGRT 264

Query: 298 KDFDFLFPLPG-EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           +              + NAL    L  AIG+    +LE L++   +  R E+V T +   
Sbjct: 265 RLIKSSELYIQGTHNIANALACLALGEAIGLPVESMLETLKQFKGLEHRCEYVKTVNDVR 324

Query: 357 RIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                      +    +           G++IV+ G  G + Q    ++ +        A
Sbjct: 325 YYNDSKGTNVGATLAAIDGLGAAIEPKQGKVIVILGGQG-KGQDF-SLLRQSVEKYVKAA 382

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I+       ED ++I  + +      +      +A+  A +    +DV+++
Sbjct: 383 ILI-----GEDAQQI-EQALTETTQLVHASTLKDAVTQAQQYAQPEDVVLL 427


>gi|225028221|ref|ZP_03717413.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
 gi|224954533|gb|EEG35742.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
          Length = 466

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/409 (16%), Positives = 117/409 (28%), Gaps = 56/409 (13%)

Query: 67  GAEAIVVSSAYSLQDF-------SATIRSNTPILVVDN------TRKFL-SLFASRLYGK 112
           GA+ ++   A ++ D        +A   SN       N      TR  L     +     
Sbjct: 60  GAKVVIGQKAENITDDIDLVVYTAAIHESNEEFAAAKNKGIPMMTRAALLGQIMANF--- 116

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AV GT GK++  S +  I      +   +     +     + R+          
Sbjct: 117 --AKSIAVAGTHGKTTTTSMLTHIL-LQADTDPTVSVGGMLDRIGGNIRVGHSDLFLTEA 173

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                S                          +     N+  DH+D+ +  +   N+   
Sbjct: 174 CEYTNSFLEFY--------------------PLYSIILNVEEDHMDFFKDIEDIKNS-FH 212

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F      +   II  D  ++  ++                             N     
Sbjct: 213 KFASQTADDGLIIINGDMGHTDFILNGLSQKHVTFGLNPDNDYTAADITFDKEGNASYNL 272

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I+   +       + G   V N+L A     AIG+    + + L        RFE+ G +
Sbjct: 273 IAHGQEKGRITLKVKGRHNVMNSLAAIACTEAIGLPLDAIRKGLLSFGGTHRRFEYKG-S 331

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
                +  DYAH    +   L   +      + V+F      R +   P   K     AD
Sbjct: 332 LGDVTVIDDYAHHPTEIRATLSAAKDYPHDELWVIFQPHTYTRTKAFLPEFAKALEQ-AD 390

Query: 412 IAIVTDDNPRSE---------DPEKIRAE---IIHGIPGFIEKGNRIEA 448
             ++ D     E         D  K+  E    +H  P F E  + ++A
Sbjct: 391 HIVLADIYAAREVDTGEVSSKDVMKLLQEDGQDVHYFPSFEEIKDFVKA 439


>gi|182414448|ref|YP_001819514.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
 gi|177841662|gb|ACB75914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
          Length = 442

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 126/417 (30%), Gaps = 59/417 (14%)

Query: 65  AQGAEAIVVSSAYSLQDFSAT-----------IRSNTPILVVDNTRKF----LSLF--AS 107
             GA  ++  +  +     A                 P LV+   R+     L+    AS
Sbjct: 35  ELGAAGVIYDAKGTEFTAKAASLHRLVIFSPGFPPEHPWLVLA--RQAGCECLAELDLAS 92

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             +      ++AVTGT+GK+++  F+    +  G  +  +G      + A          
Sbjct: 93  VFWR---GTVIAVTGTNGKTTLTEFLTHALRSIGRDARSVGNVGHSFAQAVAESNG---- 145

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                               E SS   +   L   +  A  +TN+  DH++ H   ++YF
Sbjct: 146 -----------GTSEQIAVCEVSSFQAET--LKHFRASATLWTNIAEDHLERHPGLESYF 192

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           NAK  L    +                   +         +    +     L  +  +  
Sbjct: 193 NAKWNL----VLHTRVPATGTAHPLPFVGARGGGVFAGSSVRRFAERYGRPLTGIEWVAT 248

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + Q T           +P        N L+A     A G+    +    ++  +   R  
Sbjct: 249 EHQPTNPRLAGTVFADYPQ-----RENYLLAEAWWRAAGLPVEQLELAAKRFDLGRHRLA 303

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V             A   +++E  L+   T      +V+   G  +       + +IA 
Sbjct: 304 LVVERDGATYWNDSKATNFHAVEAALERFTT-----PVVLIAGGKAKGGDLAGFVHRIAP 358

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +A + ++       E  E++                  +A+R A E+    D +++
Sbjct: 359 RVAHVVLI------GETSEELAFHCAAFRVAHTRCSTLEDAVRRAAELAEPGDHVLL 409


>gi|319649665|ref|ZP_08003821.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
 gi|317398827|gb|EFV79509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
          Length = 450

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 93/279 (33%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TNL   H+DYH T++ Y  AK  +      K+   + 
Sbjct: 166 IELSSFQL--MGIQDFRPRIAILTNLYDAHLDYHGTREEYHAAKANITMNQTEKDYFIVN 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D        +   A  R  +         +    A      +  + E         L
Sbjct: 224 ADQD--------KVMEAAARSEAKIIPFSTSRVLSEGAYVKDGWIYFNDEQVMKRKDVSL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  + N L +       G+ +  + + L     V  R ++VG            A   
Sbjct: 276 PGEHNLENILSSVAAAKLTGVGNEAISQVLSSFTGVKHRLQYVGEYQSRKFYNDSKATNI 335

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + +  +           +++   G DR  G   ++  +    A   +VT      +  E
Sbjct: 336 LATKNAVSAFDQ-----PVILLAGGLDRGNGFDELIPSLKKVKA---LVT----FGQTAE 383

Query: 427 KI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI  A +  GI       N  +A+  A ++    DV+++
Sbjct: 384 KIENAAMEAGIKTIERVDNVEKAVPAAFKLSEPGDVILL 422


>gi|313890708|ref|ZP_07824333.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120809|gb|EFR43923.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 461

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 69/438 (15%), Positives = 138/438 (31%), Gaps = 81/438 (18%)

Query: 54  EDGHLF----IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F      QA+   G + +  S   +L D    +    P +   N    K L+   
Sbjct: 47  NDGKAFEENPAAQALLELGIKVVCGSHPLALLDEDFELMIKNPGIPYSNPMVEKALAKGI 106

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+A+TG++GK++  + +  +    G S+   G     +S  
Sbjct: 107 PVLTEVELAYLVSEAP---IIAITGSNGKTTTTTMIADVLNHGGQSALLSGNIGYPASEV 163

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                              L ++    + +E SS  L    +D         TNL   HI
Sbjct: 164 V------------------LKAEPKDRLVMELSSFQL--MGVDAFHPHIALITNLIPTHI 203

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  A     ++ +  E   I+ AD   ++ +  +         +        
Sbjct: 204 DYHGSLENYV-AAKWNIQQRMTNEDYVILNADQELTRVLASKTQAKVLYFSTKKEVEGAY 262

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                   + +  +  S           +PG   V NAL    +     I + ++++ L+
Sbjct: 263 LQGDKLYYNGEFIMEAS--------SIGVPGLHNVENALATIVVAKLSNIANHVIVDTLK 314

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-------- 389
               V  R ++ G            +     +    K +       +I++ G        
Sbjct: 315 HFGGVKHRLQYAGQLHDITFYNDSKSTN---ILACQKALSGFDKENLILIAGGLDRGNSF 371

Query: 390 ---CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                  +   K  ++G+ A  +                 ++ A+   G+       +  
Sbjct: 372 DELVPDIKGIKKMILIGETAGKM-----------------ELAAD-TAGVSHS-NAKDVA 412

Query: 447 EAIRTAIEMLNKQDVLVV 464
           EA R A +     D++++
Sbjct: 413 EATRIAFKEALAGDIILL 430


>gi|301310866|ref|ZP_07216795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
 gi|300830929|gb|EFK61570.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
          Length = 445

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 108/361 (29%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G+     G               
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGN----------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 141 ---SLALQV-----AEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDHLDRYNYE 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   I + DD      + + H                 +K   
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPKATLYPFAETHENG--VKGYT 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +     T++        L  L G   +YN+L +      + I    +   L     V 
Sbjct: 249 ENNQVVIETVNGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++         VV   GG         + 
Sbjct: 309 HRLEKVLRVRGVDYINDSKATNVNSCWYALQSMT------TPVVLILGGTDKGNDYSEIE 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        I         D  K+ A     +    +  +  EA+  A +M +K D ++
Sbjct: 363 ELVNKKVHSLIF-----MGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|296285056|ref|ZP_06863054.1| hypothetical protein CbatJ_15620 [Citromicrobium bathyomarinum
           JL354]
          Length = 476

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 130/416 (31%), Gaps = 57/416 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A V     ++ +         P L   +    L   A        E  +AV GTSGKS
Sbjct: 83  ASAAV---EDTVPEVVRAKELGLPRLTRADLNAALFNAA--------ETGVAVAGTSGKS 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +  I   +G  +  I   + + +F  D+R                +S  V    +
Sbjct: 132 TVTGMLGWILHHAG-KNPTIMNGAVMKNFVSDDR--------------PFASAVVGDADL 176

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             S        +   K   G   N+  DH               +LF + L     +++ 
Sbjct: 177 YVSEVDESDGSIAQYKPAVGILLNVSLDHKSMD--------ELRQLFGDFLEASDRSVVN 228

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--LFP 305
           ADD  +  ++  A+      ++ G     I    +     +Q   +  +  D        
Sbjct: 229 ADDEEAFRLVAHANAPLTFGVTNGCAALGIVEGSIAEGPTRQAAMVHDKRDDSQHALTLN 288

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           LPG   + NAL A     A G+  A  +  L +   +  RF+ VGT+S G  +  D+ H 
Sbjct: 289 LPGRHNLSNALAAIAGANAAGVSVADAVAALAEFKGLARRFDIVGTSSSGVTVIDDFGHN 348

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-------------LADI 412
                  L+ ++         V         G    MG    +             L D 
Sbjct: 349 PEKAAATLRTLKAHEGR----VLAFFQPHGYGPLKQMGGELAETFARELGPEDISLLCDP 404

Query: 413 AIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                T D  RSE  E+I   I       I    R       +      D + + G
Sbjct: 405 VYFGGTVD--RSEGSERIVDLIAKHGGKAIHINTREGCGDWLVANARPGDRIAIMG 458


>gi|296125387|ref|YP_003632639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
 gi|296017203|gb|ADG70440.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
          Length = 471

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 135/413 (32%), Gaps = 45/413 (10%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTP--ILVVDNTR----KFLSLFASRLYG 111
           I     + A+    +   S+ D      I    P  I +V   +    K +         
Sbjct: 63  IEALKDKNAKLFFGNQEISILDGITLIIISPGIPHTIDIVKEAKRRGIKIIGEIEFAYNL 122

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               N +AVTGT GK++  + + +I       +  +G             L T  P    
Sbjct: 123 LPNRNYIAVTGTDGKTTTVTLIYKIISSYK-KARLVGNVG----NTFSKELETIEPDE-- 175

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                        + +E SS  L+   ++       +  N+  DH+D ++  + YFNAK 
Sbjct: 176 ------------DIVLELSSFQLET--VEKFHAHIAAILNIAEDHLDRYKDIEEYFNAKK 221

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +       +   + Y +   +    +  +N   ++L+   +        +      + +
Sbjct: 222 NISINQNKNDFLILNYDNIYTNIWYNELNNNCKMKLLTFSLKS---KFADIYYNEEDEYI 278

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E         + G+  V N L A  +C+   I +  +   +     +  R E V  
Sbjct: 279 YYENEKLFSIKERKILGKHNVANILAAVLVCLKDNIPAEHIEHVVNNFKGIEHRVELVAE 338

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            +    I    A + N++   LK+       + I++   G +++     +   I   +  
Sbjct: 339 INGVKYINDSKATSMNAVMSALKSFD-----KDIILIMGGRNKNIDFTSLNNLIESRVKK 393

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++       E  E +   I       I   +  +A   A  +    D +++
Sbjct: 394 LILI------GEAAEALDDMI--HFENKIIIKDFTDAFNYASAISINGDTVLL 438


>gi|167764158|ref|ZP_02436285.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
 gi|167698274|gb|EDS14853.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
          Length = 444

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD   +  +++    G +     +           
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKH---GLKAHPYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI    + + L     V 
Sbjct: 247 VEDGEVEINEPIAFNMEQEELALRGTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVATVRGVQFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E        +  G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVRSKCSALVYLGLHN---EKLHGFFDRL--GLPVADVQTGMKDAVDAAFKLARKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|269215876|ref|ZP_06159730.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
 gi|269130826|gb|EEZ61902.1| UDP-N-acetylmuramate--alanine ligase [Slackia exigua ATCC 700122]
          Length = 463

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 122/410 (29%), Gaps = 43/410 (10%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V S+A    +           P+    +    L            +  LA  GT GK+
Sbjct: 70  VVVASTAVPDTNPEVMRARELGIPVWQRAHMLAELGR---------GKKTLAAAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +S +       GL          + ++  + +  T     +    S            
Sbjct: 121 TTSSMLAGAVDALGLD-PTFIVGGMVDAYRTNAKSGTGDYYVVEADESD----------- 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  DH+D++        A  + F   +P +   ++ 
Sbjct: 169 ---------GSFLNLSPYVALVTNVEADHLDHYVGGIDEIRATFKTFMASVPADGALVVC 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D    E+ +                  +       + +   ++          L   P
Sbjct: 220 GEDPSLAELAESTGRRVVSYGFSPACDVRVSDYATHGVSSTFTLSFPDGTVVESGLAKNP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA    G+  A+G+D A     +     V  RF+  G  + G  +  DYAH   
Sbjct: 280 GRHNALNAAGVLGVIWALGLDVASASAGIASYSGVRRRFDLKG-EAAGVAVVDDYAHHPT 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +   L    ++   R+ V+F      R        G  A    D   V       EDP 
Sbjct: 339 EIAATLAAATSLDFNRVHVIFQPHRYSRTASLADEFGP-AFAGVDSLTVLGVYAAGEDPI 397

Query: 427 K------IRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +      +   +     +       +  EAIR+ ++   + D+++  G G
Sbjct: 398 EGVSGRLVADSVRACGSVSDVSYIEDFDEAIRSVVDRAREGDLVITMGAG 447


>gi|227542949|ref|ZP_03972998.1| tetrahydrofolate synthase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181171|gb|EEI62143.1| tetrahydrofolate synthase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 486

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 28/141 (19%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGK--- 398
           PGR E V         ++D AH  +  + +   + R     R+I V  C GD+D      
Sbjct: 340 PGRLERVRATPT---TFIDAAHNPHGAKALAGAMSRDFDFRRLIGVLACLGDKDVDGVLT 396

Query: 399 --RPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAI 453
              P+M        D  + T +N PR    E++  +     G        N   A+  A+
Sbjct: 397 QLEPVM--------DEVVCTVNNSPRCLPAEELADKARAIFGEERVHLAENLPAAVELAV 448

Query: 454 EMLN---KQDVL-----VVAG 466
           E+     + D +     ++ G
Sbjct: 449 ELAEDPTEGDTVSGGGILITG 469


>gi|253568794|ref|ZP_04846204.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298387941|ref|ZP_06997490.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
 gi|62900586|sp|Q8A256|MURD_BACTN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251840813|gb|EES68894.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298259348|gb|EFI02223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
          Length = 444

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 114/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + + L+    G               
Sbjct: 94  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEEHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD     + +     G +     +           
Sbjct: 190 MQNYIDAKFRITQNQTTDDAFIFWNDDPI---IKQELAKHGLKAHLYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++ ++T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 247 VEDHEVKITEPIAFNMEQEELALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E           G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHAFFD--RFGLPVADVQTGMKDAVEAAYKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|256751471|ref|ZP_05492349.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749690|gb|EEU62716.1| cyanophycin synthetase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 819

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 131/387 (33%), Gaps = 25/387 (6%)

Query: 65  AQGAEAIV-VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   +  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKP-------RNVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G +                 +     P      L+  +     
Sbjct: 487 NGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSAKTCLADKNIDA-- 544

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEELLPKES 242
              +E +  G+ +  L       G  TN+  DH+     +     A    L  E + ++ 
Sbjct: 545 -AVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKALVVEAVKEDG 603

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQVT 292
            +++ ADD  +  + +RA                       G  +++K    +    Q+ 
Sbjct: 604 YSVLNADDPMTPYLAQRAKGKIIYFSMYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQII 663

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVG 350
             V+ ++          + V NAL A      + +   ++ + ++  +         F  
Sbjct: 664 PVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPINIIAKGIKTFYCDTTHNPGRFNL 723

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I     
Sbjct: 724 FNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQGF 783

Query: 411 DIAIVTDD-NPRSEDPEKIRAEIIHGI 436
           D   V +D + R   P ++   +  G 
Sbjct: 784 DFIYVKEDLDLRGRKPGEVAKLLEQGA 810


>gi|83858914|ref|ZP_00952436.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853737|gb|EAP91589.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 467

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 80/437 (18%), Positives = 135/437 (30%), Gaps = 56/437 (12%)

Query: 50  VGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF 105
            G        I  A     GA A+VVSSA    +            VV   R+   L+  
Sbjct: 54  KGAVVH----IGHAAENVEGAGALVVSSAVKKDNPELVAARAKRTPVV---RRAEMLAEL 106

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                    ++ +AV GT GK++  S V  +   +G     I     IS++  + ++   
Sbjct: 107 MRL------KHAVAVAGTHGKTTTTSLVACLMDAAGFDPTVI-NGGIISAYGSNAKIGEG 159

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             + +    S  S                       ++   G  TN+  +H++++ +  A
Sbjct: 160 EWMVVEADESDGSFLK--------------------LRGSVGIITNIDPEHMEHYGSFDA 199

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             +A  +  E  LP    A++  D    + +  R  +          Q        V   
Sbjct: 200 LRDAFAQFVEN-LPFYGFAVLCIDHPEVQALAARIEDRRVITYGFSPQADVRLSNLVMDE 258

Query: 286 HNKQQVTISVEGKDFDFLF-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                             +     P+ GE  V NA  A  +  A+G         L    
Sbjct: 259 TGGHFDLTFQPRGIEPVTWAGMSLPMMGEHNVLNAAGALAVVQALGGGEEEARTALSGFT 318

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKR 399
            V  RF   G    G  +  DY H    +  +LK  R  + +GR+  V      R     
Sbjct: 319 GVKRRFTITGQAH-GVTVVDDYGHHPVEITAVLKAARQRVGAGRVHAVV--QPHRYSRLH 375

Query: 400 PIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAE--IIHGIPGFIE----KGNRIEAIRT 451
            +          AD   VT      E P +  ++  ++ G+            R      
Sbjct: 376 DLFEDFCTCFNDADSVWVTPVYAAGEAPIEGASQDSLVAGLQRHGHRNPNATTRETLPDD 435

Query: 452 AIEMLNKQDVLVVAGKG 468
              ++   D++V  G G
Sbjct: 436 LKSVMQPGDLIVCLGAG 452


>gi|152979585|ref|YP_001345214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus succinogenes
           130Z]
 gi|189028967|sp|A6VQN2|MURC_ACTSZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150841308|gb|ABR75279.1| UDP-N-acetylmuramate--alanine ligase [Actinobacillus succinogenes
           130Z]
          Length = 476

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 141/430 (32%), Gaps = 48/430 (11%)

Query: 56  GHLFIPQAIAQ--GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYG 111
           G +FI  A      A  +VVSSA    +    A      P++      + L+      +G
Sbjct: 64  GKIFIGHAATNVENASVVVVSSAIKPDNVEVVAAHEKRIPVIQRA---QMLAELMRFRHG 120

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +A+ GT GK++  + +  I  ++GL    +     + S   +  L         
Sbjct: 121 ------IAIAGTHGKTTTTAMISMIYTQAGLDPTFV-NGGLVKSAGTNAYLG---ASRYL 170

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A +  S     H+    S                   TN+  DH+D +           
Sbjct: 171 IAEADESDASFLHLQPMVS-----------------VVTNIEPDHMDTYHGDFDEMKRTY 213

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP    A++ ADDA   E++ +                 I   +          
Sbjct: 214 VNFLHNLPFYGLAVMCADDAVLMELVPQVGRQVITYGFSEKADYRIENYEQTGFQGHYD- 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+  G+    L  +PG+    NA  A  +    GI +  +L  L        RF+ +G 
Sbjct: 273 VITPAGERIHILLNVPGKHNALNATAALVVAKEEGIGNDAILAALADFQGAGRRFDQLGE 332

Query: 352 NSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
             R      +  DY H    + + ++  R+    R +V+        + +       ++ 
Sbjct: 333 FIRPNGKVMLVDDYGHHPTEVGVTIQAARSGWENRRVVMVFQPHRYSRTRDLFDDFVRVL 392

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQ 459
               D+ I+ D  P  E P        +   I + G    I   +  +      +++   
Sbjct: 393 SQ-VDVLILLDVYPAGEQPIAGADSRSLARSIRNLGKVDPIFVADHGQLPEVVDQIIQDG 451

Query: 460 DVLVVAGKGH 469
           D+++  G G+
Sbjct: 452 DLILAQGAGN 461


>gi|292489592|ref|YP_003532482.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora CFBP1430]
 gi|292898188|ref|YP_003537557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Erwinia amylovora ATCC 49946]
 gi|291198036|emb|CBJ45139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase (murein peptide ligase [Erwinia amylovora ATCC
           49946]
 gi|291555029|emb|CBA23087.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora CFBP1430]
 gi|312173768|emb|CBX82022.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 450

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 101/360 (28%), Gaps = 38/360 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++AV GT GK++ A     I Q  G    F IG        + +   +    I   +
Sbjct: 102 DRWVIAVAGTHGKTTTAGMTAWILQACGYEPGFVIGGVPGNFEVSANLGKSPFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D +   +A       
Sbjct: 162 YDCAFFDKRAKFV---------------HYCPRTLILNNLEFDHADIYDDLRAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+  + GC                  +        
Sbjct: 202 KQFHHLVRIVPGQGKIILPEQDANLKQVMSMGCWSEHETVGENGCWQVNKLSPDASCWEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +     + L GE  + N ++A      +G+        L        R E  G  
Sbjct: 262 LLDGERVAQVNWSLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------K 404
           S G ++Y D+AH   ++   L  +R    G  RI+ V        +     MG       
Sbjct: 321 SNGIKVYDDFAHHPTAIHATLAALRGKVGGTARILAVLEP-----RSNTMKMGISKDDLA 375

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AL  AD   +   +       ++    I       +    +EAI       +  D ++V
Sbjct: 376 PALGRADEVFLYQPHHIPWQVSQVADACIQPAHWSADIDTLVEAIAK---TAHPGDTILV 432


>gi|269101761|ref|ZP_06154458.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161659|gb|EEZ40155.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 472

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 83/438 (18%), Positives = 147/438 (33%), Gaps = 58/438 (13%)

Query: 50  VGNK-EDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSL 104
            G +   GH     A +   GA  +VVS+A S ++          I VV   R+   L+ 
Sbjct: 52  KGAQIFFGH-----AASNVEGASVVVVSTAISQENPELVAARELRIPVV---RRAEMLAE 103

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                +G      +A+ GT GK++  + V QI   +GL    +     + S   + RL  
Sbjct: 104 LMRYRHG------IAIAGTHGKTTTTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLG- 155

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                               ++    S     H    ++ +    TN+  DH+D +    
Sbjct: 156 ---------------CSRYLIAEADESDASFLH----LQPMVCVVTNIEADHMDTYGGDF 196

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                    F   LP    A++  DD   +E++ R                   L     
Sbjct: 197 EVLKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPRVGRPMLTYGFSEDADV--RLMDYQQ 254

Query: 285 IHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              +   TI  + K +      +PG     NA  A  +    G+D   ++  L +     
Sbjct: 255 CGQQGFFTIVRKDKPELKVTLNVPGRHNALNATAAVAVATEEGVDDDAIIRALAEFQGTG 314

Query: 344 GRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGK 398
            RF+ +G    G     +  DY H  + +++ ++  R      R+++VF      R +  
Sbjct: 315 RRFDHLGEFETGNGTAMLVDDYGHHPSEVDVTIQAARAGWPDKRLVMVFQPHRYSRTRDL 374

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRT 451
                 +     D+ ++ D     E P        +   I   G    I   N  EA+  
Sbjct: 375 YDDFANVLEQ-VDVLLMLDVYAAGEAPIAGADGRALCRTIRGRGKLDPIFVAN-KEALPA 432

Query: 452 AIEM-LNKQDVLVVAGKG 468
           A+   +   D+++  G G
Sbjct: 433 ALANIIQNDDLVLTQGAG 450


>gi|297569239|ref|YP_003690583.1| FolC bifunctional protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296925154|gb|ADH85964.1| FolC bifunctional protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 453

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 122/409 (29%), Gaps = 52/409 (12%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS----SFAQDN 160
            A     +     + V GT+GK SVA+ +  +  R+G                     D 
Sbjct: 29  LARLGKPQQQLRFIHVAGTNGKGSVAAALLAVLSRAGYRVGLYTSPHLSCVRERFRINDE 88

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----------------HRLDG--- 201
            +        A A+  +            ++  L                   RLD    
Sbjct: 89  FIGKDEFARHATAIHEVLGDDQITYFEFTTALALLWFAARRVDVAILEVGLGGRLDATNV 148

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I    G  TN+  DH  Y     A   A+     +           A D   + V +R  
Sbjct: 149 ITPEVGVITNVSLDHQAYLGDTLAEVAAEKAGIIK--AGVPLVTGVAADESREVVEQRCR 206

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                   +G    + +     A  +  Q            L+   G     + L     
Sbjct: 207 LLKAPCYLLGRNFSWAYGDDRQARQDSAQSVSDSAAAAAGNLWHYRGLNGEISGLQCRLR 266

Query: 322 CIAIGIDS-----------------ALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYV 360
                 +                     +         PGR E++     G     R+ +
Sbjct: 267 GRHQRDNLSLALATLELLAPIWPVTEESIRAGIAAVNWPGRLEYLEIRPAGADGRRRVLL 326

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DD 418
           D AH    +  ++  ++   +  R++VV+    D+D      + +IA  LAD  ++T  +
Sbjct: 327 DGAHNPAGIGALVGALQEDFSYRRLVVVWASMADKDVA--AGLQQIA-PLADELVLTRPE 383

Query: 419 NPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + RS  P  +R  +         E  +   A++ A +     D+++VAG
Sbjct: 384 SERSATPAAMRQMLPPATRTAAREAEDTAGALQLAWQASTPDDLVLVAG 432


>gi|237785341|ref|YP_002906046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758253|gb|ACR17503.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 489

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 133/425 (31%), Gaps = 70/425 (16%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGT 123
           A  IV S  +               P++   +       + +   G+   P   LAVTGT
Sbjct: 76  ASLIVTSPGWRPDTPLLRDAQEQGIPVIG--DVELA---WCADRDGRFGEPRTWLAVTGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++  S +  +   SG ++  +G                     +A   +   +  V+
Sbjct: 131 NGKTTATSMLASMMVESGAAAEAVGNIG------------------VAVGTALTQTPRVS 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +  E SS  L       +   AG   NL  DHID+H +  AY   K R     + + S 
Sbjct: 173 VMVAELSSFQLHWSPT--LTPDAGVVLNLAEDHIDWHGSMDAYAADKAR-----VYRGSV 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++ ADD       +R         S     + +    +      Q   I     D   +
Sbjct: 226 IVVNADDERVCREAERYMELSSTSSSGDTPARRVIEFTMGEPGAGQVGVIDGRIVDRACV 285

Query: 304 FPLPGEFQVYNAL--------------VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   + +A                A  +  + G++   ++  L    V   R + V
Sbjct: 286 PAHSEGVDIADATRISPPGPAGVADALAATAIARSQGVEPDAIVRALSSFVVEKHRGQVV 345

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   I    A   ++ +  L  + +       V    G  +      ++ K A  +
Sbjct: 346 YEAGDIRWIDNSKATNPHATDAALSAVES------CVWIAGGQLKGAQIDDLIHKNADRI 399

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGN----RIEAIRTAIEMLNKQD 460
           +   ++  D        +I  + +  I        I   +      EA++ A  +    D
Sbjct: 400 SAAVVLGQD-------REIIRQSLATIHPRIPLTVITSTDPVIAMNEAVQAASRLAQPGD 452

Query: 461 VLVVA 465
            +++A
Sbjct: 453 TVLLA 457


>gi|317504115|ref|ZP_07962117.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
 gi|315664787|gb|EFV04452.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
          Length = 443

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 104/354 (29%), Gaps = 43/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G      G                   + L    
Sbjct: 102 SKMVCITGSNGKTTTTSLIYHIFKTAGYDVGLAGNIGK--------------SLALQV-- 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SS  LD   +   +       N+  DH+D +  +   +       
Sbjct: 146 ---AEDPHEYYVIELSSFQLD--NMYDFRANIAVLLNITPDHLDRYDFKFENYADAKMRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   +E   I + DD     + K       +     +                 ++   
Sbjct: 201 LQNQTQEDSFIYWNDDPV---IQKELEKFETKAFVCPFSEHKEQGAFGYIEDGNYKLDYP 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  ++N+L A       GI S  + + L     V  R E V   + 
Sbjct: 258 TPFNMKQEELSLTGKHNLHNSLAAGLAANIAGIKSEAIRKGLGDFPGVEHRLEKVCKVNG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++    L ++ T       ++   G D+     PI   +      I  
Sbjct: 318 VQYINDSKATNVDACWYALDSMTT-----PTILILGGKDKGNDYTPIKELVKKKCRAIVY 372

Query: 415 VTDDNP----RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DN       +D   I  +            +  + +     +    D +++
Sbjct: 373 LGADNKKLHDNFDDLGVIIKDT----------HSMKDCVEACHTLAQPGDTVLL 416


>gi|212637106|ref|YP_002313631.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella piezotolerans WP3]
 gi|212558590|gb|ACJ31044.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella piezotolerans WP3]
          Length = 461

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 121/352 (34%), Gaps = 22/352 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +LAV+GT GK+S AS +  I +  G     +      +         +P  +  A   
Sbjct: 107 RWVLAVSGTHGKTSTASMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFVVEADEY 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          S+    + +    +       NL  DH D     +A    +    
Sbjct: 167 D--------------SAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQR-QFNHV 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P E   I  AD    ++V++    +   +  +       +   +    ++ +V + 
Sbjct: 212 IRTVPGEGKVIWPADAKSVQQVIELGCWSEQEMYHLNSAATGWYATNLSEDGHEFEVFLE 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + +     + L G+  + NA++A      +G+     +E L K      R E +G    
Sbjct: 272 GDSQ-GVVNWQLIGQHNIENAVMAIAAARHVGVKPDAAIEALVKFAPPKRRMELIGC-VA 329

Query: 355 GGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADI 412
           G  +Y D+AH   ++   L  +R  + +G++ V+     +  + G        +L LA  
Sbjct: 330 GVEVYDDFAHHPTAITTSLAGMRAKVGAGKVTVILEPRSNTMKSGVHKDTLANSLALASN 389

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A +        D   I A +           +  E I  A+      D ++V
Sbjct: 390 AYLYQAGNIDWD---ISAAMSTAAVPVEVLFDIDEIIAKAVAQACSGDTIIV 438


>gi|317490378|ref|ZP_07948862.1| FolC protein [Eggerthella sp. 1_3_56FAA]
 gi|316910513|gb|EFV32138.1| FolC protein [Eggerthella sp. 1_3_56FAA]
          Length = 437

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 14/133 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRP 400
            PGRFE V        I VD  H     + ++ ++  +  GR  + + G   D+D    P
Sbjct: 291 WPGRFEIVRAGEGEPTIVVDGGHNPQGAQALVDSLVDVFPGRKPVFIIGVLEDKDY---P 347

Query: 401 IMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEII---------HGIPGFIEKGNRIEAIR 450
           +M +  L   +    V  DNPR+    K+   I                    +  +A+ 
Sbjct: 348 VMLETVLPHGSAFVAVAPDNPRALPASKLARAIRWTGQDLLGCSACVNPYVARDMADALA 407

Query: 451 TAIEMLNKQDVLV 463
            A E+     ++ 
Sbjct: 408 HARELAGPDGLIC 420


>gi|298377157|ref|ZP_06987111.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
 gi|298266141|gb|EFI07800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
          Length = 445

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 108/361 (29%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G+     G               
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGN----------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 141 ---SLALQV-----AEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDHLDRYNYE 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   I + DD      + + H                 +K   
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETYENG--VKGYT 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +     T++        L  L G   +YN+L +      + I    +   L     V 
Sbjct: 249 ENNQVVIETVNGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++         VV   GG         + 
Sbjct: 309 HRLEKVLRVRGVDYINDSKATNVNSCWYALQSMT------TPVVLILGGTDKGNDYSEIE 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        I         D  K+ A     +    +  +  EA+  A +M +K D ++
Sbjct: 363 ELVNKKVHSLIF-----MGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|225019371|ref|ZP_03708563.1| hypothetical protein CLOSTMETH_03324 [Clostridium methylpentosum
           DSM 5476]
 gi|224948002|gb|EEG29211.1| hypothetical protein CLOSTMETH_03324 [Clostridium methylpentosum
           DSM 5476]
          Length = 439

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 7/126 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            P R E +  +        D AH +N ++ +++ ++ I +   I V G   D+D G    
Sbjct: 301 FPARMELLSQHPLLLL---DGAHNANGVQALMQAVKKIEASPKIAVAGMLADKDYGAELA 357

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +   A    D  I+T   + R+E   +++              +  EA   A++M     
Sbjct: 358 LLSGA---VDQLILTQVQSARAESLSRLQDAAQGHGYPVSVCEDLREAYELALKMAGADG 414

Query: 461 VLVVAG 466
           ++V+ G
Sbjct: 415 LVVIFG 420


>gi|313106944|ref|ZP_07793147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
 gi|310879649|gb|EFQ38243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
          Length = 448

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 114/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+A+TG++ KS+V + V ++   +       G   T               +
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +     Y  
Sbjct: 150 DLLADDIEL-------YVLELSSFQLET--CDRLNAEVATVLNVSEDHMDRYDGMADYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA ++ ++           S G          +     +
Sbjct: 201 AKHRIFRGARQ----VVVNRADALTRPLIADT----VPCWSFGLNKPDFKAFGLIEEDGQ 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A G+    +L  L+    +  R ++
Sbjct: 253 KWLAFQFDKLLPVGELKIRGAHNYSNALAALALGHAAGLPFDAMLGALKAFSGLAHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+  +V   GGD        + +    
Sbjct: 313 VRERQGVSYYDDSKATNVGAALAAIEGLGADIDGK--LVLLAGGDGKGADFHDLREPVAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 371 FCRAVVL-----LGRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|161526004|ref|YP_001581016.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|189349279|ref|YP_001944907.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|229486476|sp|A9AI95|MURC_BURM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160343433|gb|ABX16519.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans ATCC
           17616]
 gi|189333301|dbj|BAG42371.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia multivorans ATCC
           17616]
          Length = 465

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 132/428 (30%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 TADGGRYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTD------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQD 460
           +  D  ++T+          + + + +   +             ++A+  A+       D
Sbjct: 381 STVDALVLTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|120437105|ref|YP_862791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
 gi|158512450|sp|A0M529|MURD_GRAFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|117579255|emb|CAL67724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
          Length = 445

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 124/363 (34%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         ++ +TG++GK++V + VQ + +  G++S   G               
Sbjct: 95  EFASWFSEVP---VIGITGSNGKTTVTNLVQHLLKEGGINSGMGGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++ +      +E SS  LD   ++  K      TN+  DH+D +  +
Sbjct: 140 -------NSYAKMVAEEMHDWFVLELSSFQLD--GIEKFKPHIAILTNITPDHLDRYDYK 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN--AGCRVLSVGYQGKFIHLKK 281
              + A      E   +E   I  ADD    + +++                    +++ 
Sbjct: 191 LENYIASKFRIAENQTEEDYFIYDADDKNITDWLEKNPVRSQKLPFSIEKKIENGAYIEN 250

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +        ++   +              NA+ A+ +   + I    + E +     
Sbjct: 251 ENIVVTINNTKFTMPTSELALQGKH----NAKNAMAASMVSQLLRIRKQTIRESMASFQG 306

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E V   +    I    A   N+    L+++ +       V    G D+      +
Sbjct: 307 VEHRLEKVLKINNVLYINDSKATNVNATFYALESMES-----ETVWILGGVDKGNVYDDL 361

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +   +  I  +  DN      EKI +   + +   +E  +  EA++ A  + +K D 
Sbjct: 362 LPLVNEKVKAIICLGVDN------EKIVSAFGNIVDTMVETTSMSEAVQMAYRLSDKGDN 415

Query: 462 LVV 464
           +++
Sbjct: 416 VLL 418


>gi|319406005|emb|CBI79636.1| UDP-N-acetylmuramate--alanine ligase [Bartonella sp. AR 15-3]
          Length = 463

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 94/280 (33%), Gaps = 15/280 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P    A++  D    + +  R H
Sbjct: 161 LPADIAVVTNIDVEHLDHYGNFNAVREA-FRQFVENVPFYGFAVMCLDHPEVQTLASRIH 219

Query: 262 NAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          Q     L      +K C     +      + +  + + P+ G+  V NA
Sbjct: 220 DRWVITYGANPQADVRFLNLSMEGQKACFDILIRSRKTDEKIEINNLILPMSGKHNVSNA 279

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +GI    + + L +   V  RF   G N  G  I+ DY H    ++ +L  
Sbjct: 280 TAAIAIAHELGISPEAIKKGLAEFEGVKRRFTKTG-NWNGVEIFDDYGHHPVEIKAVLHA 338

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
            R      II V                    + AD  ++T      E+P      +++ 
Sbjct: 339 ARESAKRNIIAVIQPHRYTRLYHLFDDFSTCFNDADTVMITPVYAAGEEPIAGFGSKELV 398

Query: 430 AEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I + G           + I     +    D +V  G G
Sbjct: 399 EHIQMAGHRDVRLINTLEDVISIVSTLAKSGDYVVFLGAG 438


>gi|16081726|ref|NP_394109.1| tetrahydrofolylpolyglutamate synthase related protein [Thermoplasma
           acidophilum DSM 1728]
 gi|10639804|emb|CAC11776.1| tetrahydrofolylpolyglutamate synthase related protein [Thermoplasma
           acidophilum]
          Length = 424

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 103/310 (33%), Gaps = 19/310 (6%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           NR  T   +    A  Y +   V + SVE    G    RLD   +I    + + +   ++
Sbjct: 110 NRNPTFFEVTTMMAFQYFADMKVDYASVEVGLGG----RLDATNIIMPLVSVITQVGYEH 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                    +       ++ +  P ++         V+K   +      S         +
Sbjct: 166 ADKLGCSLTSIAYEKGGIIKEGRPIVLQDQKPE---VVKTIKSISQVRGSPLIMLDPQKI 222

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL-EK 338
           + +                 +     L GE+Q  NA  A     A GI           K
Sbjct: 223 RGLNLSEAGTSFDFEGMNGTYHLETDLIGEYQALNAATAVLAIEASGIGLEKNDIERGIK 282

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               PGR E     SR   I +D AH   ++  +    R + + + ++V G   D+D   
Sbjct: 283 SARWPGRLEI---ISRDPLIIIDAAHNPPAVNKMANTFRKVFTKKPLIVAGILSDKDS-- 337

Query: 399 RPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                 +   ++D  I T   +  R+ DP+K+     H         + I+A+  A    
Sbjct: 338 -YAYFHVIRQISDRIIFTTPEEKERAVDPKKLYDLYGHLFSEARVIPDPIDAVNEA---A 393

Query: 457 NKQDVLVVAG 466
            + D ++V G
Sbjct: 394 KRSDFVLVTG 403


>gi|313898702|ref|ZP_07832237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312956586|gb|EFR38219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 523

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 120/367 (32%), Gaps = 26/367 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +  A  L   +  +I+ +TG+ GK+SV + + ++      +    G  +           
Sbjct: 168 ADAAKLLRSNNALSIVGITGSYGKTSVKTILNELLSDVYYTLMTPGSYNNQMG------- 220

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                I L           V    + A         +  +K   G  T++G  H+    +
Sbjct: 221 -----ITLTIRNKLERLHEVFLCEMGADHVKEIHDLMQFVKPQYGVVTSVGAQHLATFGS 275

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +   + KM++ E L            D          +        +     +     +
Sbjct: 276 MENILHEKMQMIECLPADG--IGFVNRDNAYIRTYSIQNTCRIVWFGMSEDADY-RCCDI 332

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                    T+  EG+   F   L G+  V N   A  +   +G+   ++   +EKL  V
Sbjct: 333 RYSEEGTSFTVIQEGQSHRFHTKLLGKHNVVNITCAIAVAHTLGVSWEIMALAVEKLPYV 392

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRP 400
             R +   +      +   Y          L+ ++ +   R I+   F   G++ + ++ 
Sbjct: 393 EHRLQVRKSFC--TLLDDAYNSNPEGARCALEVLKQMKHQRFIITPGFLELGEQQEEEQY 450

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPG--FIEKGNRIEAIRTAIEMLN 457
            +G+   D  D A++      +   + I A +   G P        +  EA+    +   
Sbjct: 451 KLGEEIADSVDTAVLV----GAVQTKSIAAGLTDSGFPKERVHVCDSFQEALAIVQKQAQ 506

Query: 458 KQDVLVV 464
            QD +++
Sbjct: 507 LQDCVLL 513


>gi|326316612|ref|YP_004234284.1| FolC bifunctional protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373448|gb|ADX45717.1| FolC bifunctional protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 441

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 117/398 (29%), Gaps = 36/398 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +   A RL       ++ V GT+GK S  + ++ +  +SG  +        +    +
Sbjct: 27  LERVGEVARRLGLHFACPVITVAGTNGKGSTCAMLEAVALQSGYRTGVYTSPHLVKFEER 86

Query: 159 DNRLT----------TPSPIYLAKALSYLSSQGVTHVSVE------ASSHGLDQHRLDGI 202
                            + +  A+                       S  GLD   L+  
Sbjct: 87  CRIRGESVGADDLVEHFAAVEAARTQDGAEVSLSYFEFTTLAILRLMSQAGLDVAILEVG 146

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMK 258
                  TN+         +        +    E + +E   I+                
Sbjct: 147 LGGRLDATNVVDTDCAVITSIDIDHTEFLGPDRESIGREKAGIMRPGRPAIVSDPMAPQS 206

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +A      +   G+  +                  G  +  L            L A
Sbjct: 207 VLDHARALGADLWQFGQDFNFSGDKQQWAWAGRGRRYAGLAYPALRGANQLVNASGVLAA 266

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                     +A  +     +  +PGRF+ V        + +D AH  +S+  +  N+  
Sbjct: 267 LEALRDRLPITAQAVRTGLAMVELPGRFQIVPGQPT---LVLDVAHNPHSVAALTANLDA 323

Query: 379 I-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA-----E 431
           +        VFG   D+D    P++ +I   L D    TD   PR+E    ++      +
Sbjct: 324 MGFFPTTHAVFGAMADKDLA--PMLARI-GPLVDRWYFTDLPTPRAETAAALQQKWNALQ 380

Query: 432 IIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
           I+ G    +      +  +A++ A+      D +VV G
Sbjct: 381 IVAGGRREVRTSLHPDPWQALQAAVGAAEPTDRIVVFG 418


>gi|329954172|ref|ZP_08295267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
 gi|328528149|gb|EGF55129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
          Length = 444

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 116/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AMEKHDYYVIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD   +  +++    G +     +           
Sbjct: 190 MQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKH---GLKAHLYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI    + + L     V 
Sbjct: 247 VEDGEVEINEPIAFNMEQEELALHGTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVATVRGIQFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E   +       G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVRTKCSALVYLGLHN---EKLHEFFD--RFGLPVADVQTGMKDAVDAAFKLAQKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|317133419|ref|YP_004092733.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
 gi|315471398|gb|ADU28002.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
          Length = 454

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 128/404 (31%), Gaps = 48/404 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A V        +  A    N P+    +  + L L +         +  AV+GT GK++ 
Sbjct: 76  AAVHE---DNPEIQAARAKNLPLF---SRAELLGLLSRHY-----ADTFAVSGTHGKTTT 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + QI   +G     +     +      +R+       L    +              
Sbjct: 125 TSMLTQILMMAGKDPTAV-IGGKLPFIGGSSRIG---ATDLMVCEACE------------ 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 Q     +        N+  DH++Y ++ +       R   +       A+IY  
Sbjct: 169 -----FQDSFLTLHPAVSVILNIDNDHLEYFKSMENLIEHFARFAAQTGN----ALIYNG 219

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +     R  +       + +   +          +     +  E         +PG 
Sbjct: 220 DDANTLRAVRNASIHKITFGLDHANDYSADNIGVVDRHLTFDLLRGEQTMAHITLKVPGR 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL A       G+  A++ E L        RFE +G  + G  +  DYAH    L
Sbjct: 280 HNILNALAACAAAAYAGVPDAVIEEGLNAFSGAGRRFEVLGRTANGTTVADDYAHHPTEL 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLADIAIVTDD-NPRSED 424
              L+  + +    +  VF          R  M       AL +AD  +++     R  +
Sbjct: 340 SATLRAAKDLGYAAVWAVFQPF----TFSRTAMLLDDFADALRIADKVVLSPIMGSREVN 395

Query: 425 PEKIR-AEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAG 466
              IR  ++   +PG +   +  +AI     E     D+++  G
Sbjct: 396 TYGIRSEDLAAKVPGSVCLPD-FDAIAAYVSEHAGPHDLVLTLG 438


>gi|192359638|ref|YP_001983384.1| UDP-N-acetylmuramate--L-alanine ligase [Cellvibrio japonicus
           Ueda107]
 gi|190685803|gb|ACE83481.1| UDP-N-acetylmuramate--alanine ligase [Cellvibrio japonicus Ueda107]
          Length = 474

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 75/465 (16%), Positives = 149/465 (32%), Gaps = 61/465 (13%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL 79
           + +   + K + V+   R +Q G  IF+        GH        QGA+ +V SSA + 
Sbjct: 41  YEISGSDIKASSVTE--RLVQKGARIFI--------GHD-ASNV--QGADVVVNSSAVNN 87

Query: 80  QDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            +          I VV   R+   L       +G      +AV GT GK++  S +  I 
Sbjct: 88  TNPEVVGARELRIPVV---RRAEMLGELMRYRHG------IAVAGTHGKTTTTSLLASIL 138

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             + L                    +T +   L  +   ++    +  S           
Sbjct: 139 AAADLDPT---------FIIGGLVNSTGTNAQLGGSRYLVAEADESDASFL--------- 180

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++ +    TN+  DH++ +    +        F   LP    A++  +D   ++++
Sbjct: 181 ---HLQPMVAIVTNIDADHMETYGGDFSRLKKTFVEFLHNLPFYGLAVVCGEDPVIRDII 237

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                         +        +   + ++  V      +       +PG   V NA  
Sbjct: 238 PDVARPILTYGFNEHCDFRATNIRQDKMSSEFDVLRPGNPEPLHIRLNIPGIHNVLNATA 297

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILK 374
              +    GI  + +   L     V  RF+  G    G     +  DY H    +  ++K
Sbjct: 298 VIAVATDEGISDSAIQAGLANFQGVGRRFQVYGNFPVGDGSTMLVDDYGHHPREVAAVIK 357

Query: 375 NIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------E 426
            +R     R +V+        R +       ++     D  ++ +     E+P       
Sbjct: 358 AVRDGWPERRLVMVYQPHRFTRTRDLYEDFVEVLST-VDALVMLEVYSAGEEPIPGADSR 416

Query: 427 KIRAEIIH-GIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKGH 469
            +   I   G+   +      + +   I+ L    D+++  G G+
Sbjct: 417 HLCRSIRARGVIEPVFVETV-DGVPDVIKDLVRAGDIVITQGAGN 460


>gi|114704920|ref|ZP_01437828.1| UDP-N-acetylmuramate--L-alanine ligase [Fulvimarina pelagi
           HTCC2506]
 gi|114539705|gb|EAU42825.1| UDP-N-acetylmuramate--L-alanine ligase [Fulvimarina pelagi
           HTCC2506]
          Length = 471

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 90/281 (32%), Gaps = 17/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ T +    A     E +       +          V +   
Sbjct: 173 LPADIAVVTNIDPEHLDHYGTFERVKEAFRSFVENVPFYGFAVMCIDHPVVQSVVSEIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPGEFQVYNAL 316
                                    +   VT+    K  +        P+PG+  V NA 
Sbjct: 233 RRVITYGENPQADVRFENVSFEPGKSHFSVTVRDRVKGTETNLGELTLPMPGKHNVSNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+    + + L     V  RF   G    G  IY DY H    +  +L   
Sbjct: 293 AAIAVADRLGLSPEQIQKGLATFEGVKRRFTLTGV-VDGIAIYDDYGHHPVEIRSVLAAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R   +GR+I V      R    + +    A     AD  I+       E+P      E +
Sbjct: 352 RASANGRVIAVV--QPHRYTRLQALFPDFASCFNDADTVILAPVYAAGEEPIEFANSEML 409

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
              I  G        +  + + T I ++   +D++++ G G
Sbjct: 410 VERIKLGGHRDARLIDGPDELPTLINQIAEAEDIVILLGAG 450


>gi|308373337|ref|ZP_07667555.1| LOW QUALITY PROTEIN: putative Mur ligase family, catalytic domain
          protein [Mycobacterium tuberculosis SUMu005]
 gi|308338020|gb|EFP26871.1| LOW QUALITY PROTEIN: putative Mur ligase family, catalytic domain
          protein [Mycobacterium tuberculosis SUMu005]
          Length = 78

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 5  DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVGNKEDGHLF 59
          +L      E++      I P     R++   V  DSR I  G +F+A+ G + DGH  
Sbjct: 3  ELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHDH 60


>gi|327541989|gb|EGF28489.1| folylpolyglutamate synthase/dihydrofolate synthase [Rhodopirellula
           baltica WH47]
          Length = 512

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 97/318 (30%), Gaps = 21/318 (6%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             LTT   I              T +     S  + Q     I  I     ++  D    
Sbjct: 171 FELTTAMAIEHFHRRQCDIWVLETGLGGRLDSTNVFQSHATAITSIGLDHQHVLGD---- 226

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             T +     K  +F+   P  +             +  +       +            
Sbjct: 227 --TAELIAAEKAGIFKRDTPAINGVPAGPVRDVIVRIADQIGAPLMHLGDEIQITPNTES 284

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-----DSALVLE 334
           +K      +          D      L G  QV NA +A  L  A+            + 
Sbjct: 285 QKCWGSSFQISGLGDWMPGDTVVDLKLEGAHQVRNAAIALALVDALPDVTRKLRPEQCIH 344

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGD 393
                  +  R E          + +D AH ++S+E +L  +    +GR    +FG   D
Sbjct: 345 QCLSSLQMEARLERF-DLPDDRVVLLDTAHNADSIEAMLNVLSQRMAGRRRFCLFGTSAD 403

Query: 394 RDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI-RAEIIHGI--PGFIEKGNRIEA 448
           ++      M +    L D   +T  + NPR    + + R  +  G+         + I A
Sbjct: 404 KNVL---AMLQRMQPLFDQWTLTRYEGNPRFVPVDDLNRTALQAGLSPDRITSFEHPIAA 460

Query: 449 IRTAIEMLNKQDVLVVAG 466
           ++ A+  LN  DVLV+ G
Sbjct: 461 VQNAVNSLNTGDVLVICG 478


>gi|312136565|ref|YP_004003902.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224284|gb|ADP77140.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 510

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 12/198 (6%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                       +     V   + +    +PG   + N+L    + +A+G+    + E L
Sbjct: 301 CENCGELLCKCGEFKRRYVGPFEKNIKLQIPGIVNIENSLATITVGLALGLKMKYIKEKL 360

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
           E    + GRFE +G    G +IY+D AH   S+E ++ N+     GR+I+          
Sbjct: 361 ENFKGIKGRFEKIG-EIDGVKIYMDAAHNPESMEKVIGNLD--VKGRLIISLDNPDTLTT 417

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKI----RAEIIHGIPGFIEK--GNRIEAIR 450
             +  +G+I    ADI I +  N   E   +I      E+  G          N  ++I 
Sbjct: 418 RDKFRIGRILSKKADILICSAKN---ETTGEIDWNAAEEVARGAKECKTIITSNVRDSIL 474

Query: 451 TAIEMLNKQDVLVVAGKG 468
            AIE+  K D+++  G G
Sbjct: 475 KAIELSKKGDLILHIGPG 492


>gi|258514340|ref|YP_003190562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778045|gb|ACV61939.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 449

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 125/362 (34%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+R        ++A+TGT+GK++  S + +I + +G+ +   G          + +  
Sbjct: 97  ELAARFIKAP---VVAITGTNGKTTTTSLIGEIFRNNGIKTLVAGNIGLPLVTEVE-KYG 152

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               I                   E SS  L+       +       N+  DH+D H T 
Sbjct: 153 PGDII-----------------VAEVSSFQLET--TVHFRPNVAVILNITPDHLDRHATM 193

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           Q Y  AK  ++++ L  +   + Y DD+ +  +  +               + + ++   
Sbjct: 194 QNYAQAKANIYKQQLSSDYTVLNY-DDSLTASLAVKVPGRVIFFSRKHILDRGVFVRNEE 252

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I        ++   D      +PG   + NAL +      +G+   ++   L+    V 
Sbjct: 253 IIAALDGDETAICRVD---EVKIPGAHNLENALASVAAGFVLGVGRQVLANTLKTFPGVE 309

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFV   +    I        ++    L+          IV+   G ++    +  M 
Sbjct: 310 HRLEFVAEINGVRYINDSKGTNPDAAVKGLQAYSQ-----PIVLIAGGRNKGSDFKEFMQ 364

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                +  + ++       E  +++       G    I+  + I A++ A +     DV+
Sbjct: 365 AAKEKVRTMVVL------GECAQELLEAAQAVGFGNVIQATDFISAVKLAAQTARSGDVV 418

Query: 463 VV 464
           ++
Sbjct: 419 LL 420


>gi|71898202|ref|ZP_00680376.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731941|gb|EAO33998.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 477

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 143/418 (34%), Gaps = 49/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+      +G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRHG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  +    G   +F IG                     L  A +         
Sbjct: 126 KTTTTSLIAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGAGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        RL+ +       TN+  DH++ +    +        F + LP    A
Sbjct: 167 LVVEADESDGSFLRLNPLV---AVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           ++  DD    E++ +A      +         +  + V     +   T+ +         
Sbjct: 224 LLCLDDPEVAELVGKARRH--VMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360
             LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    V   
Sbjct: 282 LALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLI 341

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSSVDALVLSE 400

Query: 418 DNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             P  E      D + +   I   G    +  G     I    ++L + D+L++ G G
Sbjct: 401 VYPAGEVPIPGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLLMMGAG 458


>gi|288929764|ref|ZP_06423607.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328865|gb|EFC67453.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 460

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 119/394 (30%), Gaps = 43/394 (10%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IPQA  +    +VV +     D    +        +    + L      L G      L 
Sbjct: 63  IPQACKKAQSCLVVYTPAIPDDHKELVYFRQNGFEIQKRAQVLGTLTRTLKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
             GT GK++ +     I  +S            IS     N + +P   Y+         
Sbjct: 117 FAGTHGKTTTSCMCAHIMHQSHPDCNAF--LGGISKNYGTNYILSPKSEYVVIEADEFDR 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                 ++      T+   DH+D + T+ AY  +       +  
Sbjct: 175 SFHW------------------LRPWMSVITSTDPDHLDIYGTKAAYMESFRHYTTLIRE 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I    +      +K     G +V          H + V   +           ++
Sbjct: 217 GGVLIIKKGVE------LKPDVKPGVKVYEYALDAGDFHAENVKIDNGNITFDFVSPVEN 270

Query: 300 FDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                   P    + NA+ A  +    G ++  +   ++  H V  RF+F    +     
Sbjct: 271 VKNVTLGHPIPINIENAVAAMAMAQLNGCNAEELRYGIKTYHGVDRRFDF-KIKTPHLVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-VVFG-CGGDRDQGKRPIMGKIALDLADIAIVT 416
             DYAH  N +    +++R +   R I  VF      R +       K AL L D  I+ 
Sbjct: 330 LSDYAHHPNEILQSAQSLRQLYKDRKITAVFQPHLYTRTRDFYKEFAK-ALSLLDEVILC 388

Query: 417 DDNPRSEDPEK------IRAEIIHGIPGFIEKGN 444
           D  P  E+P +      I   +  G+   +   +
Sbjct: 389 DIYPAREEPIEGVSSKLIYDNLDAGVEKSMIAKD 422


>gi|283768730|ref|ZP_06341641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
 gi|283104516|gb|EFC05889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
          Length = 523

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 120/362 (33%), Gaps = 22/362 (6%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            RLY +     + +TG+ GK+S  + +Q I +    S                    TP 
Sbjct: 170 KRLYAQRDLIKIGITGSYGKTSTKNIIQSIVREEYHSLMT------------PASYNTPM 217

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            I +           V    + A   G     +  ++   G  T++G  H+    + +  
Sbjct: 218 GITMTIRNYLKPIHQVFVCEMGADHVGEITRLMKYVQPQIGVVTSVGPQHLLTFGSLENI 277

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            + KM++ E L       I   +D   +  +K  ++       +  +       K+    
Sbjct: 278 IHEKMQMIERLPKDGLGVINLDNDYIRQYRVK--NSVPLISFGIQSEDVDYRAVKISYTT 335

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                T+    ++  F   L GE  + N L    +   +GI    +   +  +  V  R 
Sbjct: 336 TGSYFTVVHAKEEVAFHTKLLGELNIMNILSGIVVARHLGISWKSLQRAVANMEQVEHRL 395

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVV---FGCGGDRDQGKRPIM 402
           E        G  ++D A  +N +   +   + ++  G+  ++       G +        
Sbjct: 396 ELKKI---NGHRFIDDAFNANPIGAKMALEVLSMMPGKRYIITPGMIDLGKKQDEYNREF 452

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           GK      D  I+     +++  ++  AE+              EA+    E  ++ D +
Sbjct: 453 GKRMKHFVDEVILVGPK-QTKAIQEGLAEMNFDADHIHVYQTVQEALAYVYEHADEHDTI 511

Query: 463 VV 464
           ++
Sbjct: 512 LL 513


>gi|119387199|ref|YP_918254.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
 gi|166224712|sp|A1BAL4|MURC_PARDP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119377794|gb|ABL72558.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
          Length = 475

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 132/425 (31%), Gaps = 58/425 (13%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             G   I  +      +     R   P++        L            ++ +A+ GT 
Sbjct: 70  EAGVVVISTAIKKGNPELEEARRRGLPVVRRAEMLAELMRL---------KSNVAIAGTH 120

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + V  +    G     I     I ++  + R                       
Sbjct: 121 GKTTTTTMVATLLDAGGFDPTVI-NGGVIHAYGSNARAGAGE-----------------W 162

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA       +RL          TN+  +H+++  +  A      + F   +P    A
Sbjct: 163 MVVEADESDGSFNRLPATI---AIVTNIDPEHMEHWGSFDALRK-GFQDFVSNIPFYGLA 218

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--- 301
           +   D    + ++ R  +          Q     +                   + +   
Sbjct: 219 VCCTDHPEVQSLVGRLTDRRVATFGFNAQADVRAINLRYENGVAHFDIALQGEAELNEGE 278

Query: 302 ------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                    P+PG+  V NAL A  +   +G+  A + E L +   V  RF  VG    G
Sbjct: 279 VPVIEGCTLPMPGDHNVSNALAAVAVARHLGMKRAQIREALARFGGVSRRFTRVG-EVDG 337

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIA 413
             I  DY H    +  +LK  R  T GR+I V      R      +          AD+ 
Sbjct: 338 VTIIDDYGHHPVEIAAVLKAARQATKGRVIAV--HQPHRYSRLSSLFDDFCTCFNEADVV 395

Query: 414 IVTDDNPRSED--PEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            + +     E+  P   R +++ G+           +++G+     R   E     D++V
Sbjct: 396 AIAEVYSAGEEPIPGASRDDLVAGLIAHGHRHARAVMDEGDLE---RLVREQARPGDMVV 452

Query: 464 VAGKG 468
             G G
Sbjct: 453 CLGAG 457


>gi|296140341|ref|YP_003647584.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
 gi|296028475|gb|ADG79245.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
          Length = 495

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 87/454 (19%), Positives = 143/454 (31%), Gaps = 74/454 (16%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G   +V + A   +D    + +     P+++       L       
Sbjct: 63  GHS--ADALDLLPGGPTVVVTTHAAIPKDNPELVEAHRRGIPVILRPEVLADLME----- 115

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                   L V+GT GK+S  S      Q  G  +        ++    +    T     
Sbjct: 116 ----GYRTLLVSGTHGKTSTTSMAVVGLQHCGG-NPSFAVGGELNESGTNAFHGTGDVFV 170

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S                       L          TN+  DH+D+  +++ Y  A
Sbjct: 171 AEADESD--------------------GSLLQYSPDVVVVTNVEADHLDFFGSEEKYV-A 209

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHN----AGCRVLSVGYQGKFIHLKKV--- 282
               F E +      ++  DD  S  + +R H      G RV   G          V   
Sbjct: 210 VFDAFTERIRPGGTLVVCLDDPGSAALGQRTHAALRARGVRVFGYGEGTHRDLAPDVTLI 269

Query: 283 --------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG---IDSAL 331
                    A     +V  S E +       +      + AL A    IA+      +A 
Sbjct: 270 AELLDYKPRAEGGMLKVRFSDENRQVTERAIMLSVPGKHMALNAIAATIAVVNLGYPTAK 329

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIV 386
           V+  +E    V  RF+  GT   G R++ DYAH    +  +L     +       GR+IV
Sbjct: 330 VIAGIESFGGVHRRFQLRGTED-GVRVFDDYAHHPTEVRAVLTAAAEMVAKQAVPGRVIV 388

Query: 387 VFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF 439
            F      R +       + AL LAD  +  D     E P      E+I  ++   +   
Sbjct: 389 AFQPHLYSRTEQFAAEFAE-ALSLADHVVALDVYGAREAPLPGITGERIAEKVTTDVTYV 447

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
             + +      T +++    DV++  G G  T+ 
Sbjct: 448 PSQADVA---GTVVDIARPGDVVITMGAGDVTMQ 478


>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella
           patens]
 gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 130/395 (32%), Gaps = 36/395 (9%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             +  D +A I++  P          L   A+ L G     + AVTGT+GKS+V +F  Q
Sbjct: 128 PVTHPDIAAAIQAGVPAF------SELGFAAAALPGN--IKVAAVTGTNGKSTVTTFTSQ 179

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I + +G+ +F  G   T  S              L            +   VE SS+ L+
Sbjct: 180 ILRNAGVRTFVGGNLGTPLSDGV-----------LQCLAFPAEDPPFSVAVVEVSSYQLE 228

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                     A    NL  DH++ H++ +AY  +        +     AII   D   + 
Sbjct: 229 LP--GSFHPKAAVILNLTPDHLERHKSMEAYG-SIKCRVFSRMEASDVAIIPQSDVLLRR 285

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +   + +   R    G  G  +      AI       +                      
Sbjct: 286 LAAMSGSQATRAWMGGLPGVQLDKDARRAIVVVPTTGVEARLYLSSLQAVGTHNAHNAGT 345

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILK 374
                L + +G+ S  +   +  L   P R E V  + +G     D  A   +S  + ++
Sbjct: 346 AALLALSLDVGLQSEDIQAAIPHLKAPPHRMEIVHQDDQGVVWVNDSKATNVDSTSVGIR 405

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGK---IALDLADIAIVTDDNPRSEDPEKIRAE 431
           +I     G+  VV   G  +       +G    +    +  A+V            I  E
Sbjct: 406 SI----VGKKAVVLLGGQAKVGVGSGGLGFGVLVESLQSHRAVV----LFGASGLAIEQE 457

Query: 432 II-HGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   G+           +A++ A  +    D +++
Sbjct: 458 LRHAGLSITCTYTELFADAVQLAGSLAQPGDAVLL 492


>gi|294787084|ref|ZP_06752338.1| UDP-N-acetylmuramate--alanine ligase [Parascardovia denticolens
           F0305]
 gi|315226736|ref|ZP_07868524.1| UDP-N-acetylmuramate--L-alanine ligase [Parascardovia denticolens
           DSM 10105]
 gi|294485917|gb|EFG33551.1| UDP-N-acetylmuramate--alanine ligase [Parascardovia denticolens
           F0305]
 gi|315120868|gb|EFT84000.1| UDP-N-acetylmuramate--L-alanine ligase [Parascardovia denticolens
           DSM 10105]
          Length = 528

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 57/183 (31%), Gaps = 14/183 (7%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             F     +PG     NA  A    + +G+      +     +    RFE  G    G  
Sbjct: 331 GKFRVNLRVPGIHNARNAAAAIIAAVLLGVSPQKACQAAFDFYGAKRRFEKRG-EVNGVT 389

Query: 358 IYVDYAHTSNSLEMILKNI-RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIV 415
           +  DYAH    +  +L+   R        VVF      R         + AL LAD  IV
Sbjct: 390 VVDDYAHHPTEISALLQAAHRRYPQAATRVVFQPHLYSRTHFFAREFAQ-ALSLADDVIV 448

Query: 416 TDDNPRSEDPEK-------I---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           T   P  E  E        I     +   G        +  EA R         D+++  
Sbjct: 449 TGIFPAREKQEDWPQVGPDIVVSLIDQEGGRVKARSVEDMDEAGRLIAADAQPGDLILTV 508

Query: 466 GKG 468
           G G
Sbjct: 509 GAG 511


>gi|146342497|ref|YP_001207545.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. ORS278]
 gi|166222960|sp|A4YZK2|MURC_BRASO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146195303|emb|CAL79328.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Bradyrhizobium sp. ORS278]
          Length = 467

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 144/424 (33%), Gaps = 57/424 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  AGADVVVVSTAIKRDNPELMAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    GL    I     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDAGGLDPTVI-NGGIINAYGTNARLGGGEWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T +A  +A  R F E +P    
Sbjct: 168 -------------GTFLKLPADVAIVTNVDPEHLDHFKTFEAVQDA-FRAFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  D    + ++ +  +       V  Q     +             +  + K     
Sbjct: 214 AVMCIDHPVVQALVGKIEDRRIITYGVNPQADVRLVDLTPMGGGSSFKVVFRDRKSGATH 273

Query: 304 F------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+PG     NA  A  +   +G+    + + +     V  RF   G    G  
Sbjct: 274 EISDIVLPMPGRHNASNATAAIAVARELGLSDEAIRKAIGGFGGVKRRFTRTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           +  DY H    +  +LK  R  ++G+++ V      R    + +  +       AD  +V
Sbjct: 333 VIDDYGHHPVEIAAVLKAARESSNGKVVAVV--QPHRYTRLQSLFEEFCTCFNDADAVVV 390

Query: 416 TDDNPRSEDP-EKIRAE------IIHGIPGFIEKGNRIEAIRTA---IEMLNKQDVLVVA 465
            D  P  E P E I  +        HG    +      +A   A    ++    D++V  
Sbjct: 391 ADVYPAGEAPIEGIDRDHFVLGLRAHGHRDVLPLP---KAADLAGIVKDLAKPGDLVVCL 447

Query: 466 GKGH 469
           G G+
Sbjct: 448 GAGN 451


>gi|32474140|ref|NP_867134.1| folylpolyglutamate synthase/dihydrofolate synthase [Rhodopirellula
           baltica SH 1]
 gi|32444677|emb|CAD74679.1| folylpolyglutamate synthase/dihydrofolate synthase [Rhodopirellula
           baltica SH 1]
          Length = 543

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 98/318 (30%), Gaps = 21/318 (6%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             LTT   I              T +     S  + Q     I  I     ++  D    
Sbjct: 201 FELTTAMAIEHFHRRQCDIWVLETGLGGRLDSTNVFQSHATAITSIGLDHQHVLGD---- 256

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             T +     K  +F+   P  +             +  +       +            
Sbjct: 257 --TAELIAAEKAGIFKRDTPAINGVPAGPVRDVIVRIANQIGAPLMHLGDEIQITPNTES 314

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI-----DSALVLE 334
           +K      +          D      L G  Q+ NA +A  L  A+            + 
Sbjct: 315 QKCWGSSFQISGLGDWMPGDTVVDLKLEGAHQIRNAAIALALVDALPDVTRKLRPEQCIH 374

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGD 393
                  +  R E    +     + +D AH ++S+E +L  +    +GR  + +FG   D
Sbjct: 375 QCLSSLQMEARLERFDLSD-DRVVLLDTAHNADSIEAMLNVLNQRMAGRRRLCLFGTSAD 433

Query: 394 RDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKI-RAEIIHGI--PGFIEKGNRIEA 448
           ++      M +      D   +T  + NPR    + + R  +  G+         + I A
Sbjct: 434 KNVL---AMLQRMQPHFDQWTLTRYEGNPRFVPVDDLNRTALQAGLSPDRITSFEHPIAA 490

Query: 449 IRTAIEMLNKQDVLVVAG 466
           ++ A+  LN  DVLV+ G
Sbjct: 491 VQNAVNSLNTGDVLVICG 508


>gi|332652745|ref|ZP_08418490.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
 gi|332517891|gb|EGJ47494.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
          Length = 464

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/409 (17%), Positives = 129/409 (31%), Gaps = 41/409 (10%)

Query: 66  QGAEAIV--VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA+ ++   +      + +A   +  P+       +              +N L V GT
Sbjct: 78  QGADCVIRTAAVHDDNPEIAAARAAGIPVFERA---QAWGAIMRHY-----QNALCVAGT 129

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S    I   +      +     + +    +R+     I L       S     
Sbjct: 130 HGKTTTTSMCTHIFLAAQRDPTVM-IGGVLPALGAGHRVGKGDTIILESCEYCNSFLSFF 188

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                                      N+  DH+D+ +  +   ++  R  + +      
Sbjct: 189 --------------------PTVAVILNVDADHLDFFKDLEDVKHSFRRFAQLVPQGGCV 228

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
                 D      M    +    +L+ G +   IH   +          +  +GK     
Sbjct: 229 VA----DGDDANTMDALKDLDKPMLTFGLEQGDIHAANLTWNKGLPTFDLIYKGKTLGSI 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NAL AAG  + + +    + E L        RFE       G  +Y DY
Sbjct: 285 SLRVPGIHNVRNALAAAGAALQLNVPVEAIREGLYAFGGAGRRFE-HKGEYHGAVVYDDY 343

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           AH  + L+ +L  ++T+   R+I  F      R +       ++   L D  ++ +    
Sbjct: 344 AHHPHELQALLSTVKTLGYQRVICAFQPHTYTRTKELFDDFVEVL-KLPDKVLLAEIFAA 402

Query: 422 SE-DPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E D   I   ++   IP         +      E+    D+L+  G G
Sbjct: 403 RETDTLGISSKDLADRIPNAEFCPTLEDVTARFKELAQPGDLLITVGAG 451


>gi|29348859|ref|NP_812362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340765|gb|AAO78556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 413

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 114/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + + L+    G               
Sbjct: 63  EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSADLNVGLAGNIGK----------- 108

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       + +   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 109 ---SLALQV-----AEEHHDYYIIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 158

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD     + +     G +     +           
Sbjct: 159 MQNYIDAKFRITQNQTTDDAFIFWNDDPI---IKQELAKHGLKAHLYPFAAVKEDGAIAY 215

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              ++ ++T  +          L G+  +YN+L A       GI    + + L     V 
Sbjct: 216 VEDHEVKITEPIAFNMEQEELALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVE 275

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 276 HRLEKVARVRGIDFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 330

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E           G+P    +    +A+  A ++  K + ++
Sbjct: 331 LVREKCSALVYLGLHN---EKLHAFFD--RFGLPVADVQTGMKDAVEAAYKLAKKGETVL 385

Query: 464 V 464
           +
Sbjct: 386 L 386


>gi|116052448|ref|YP_792760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115587669|gb|ABJ13684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 448

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 114/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+A+TG++ KS+V + V ++   +       G   T               +
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +     Y  
Sbjct: 150 DLLADDIEL-------YVLELSSFQLET--CDRLNAEVATVLNVSEDHMDRYDGMADYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA ++ ++           S            +     +
Sbjct: 201 AKHRIFRGARQ----VVVNRADALTRPLIADT----VPCWSFDLNKPDFKAFGLIEEDGQ 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L+    +  R ++
Sbjct: 253 KWLAFQFDKLLPVGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+  +V   GGD        + +    
Sbjct: 313 VRERQGVSYYDDSKATNVGAALAAIEGLGADIDGK--LVLLAGGDGKGADFHDLREPVAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D   I   + + +P  +      EA+R A E+  + D +++
Sbjct: 371 FCRAVVL-----LGRDAGLIAQALGNAVP-LVRVATLDEAVRQAAELAREGDAVLL 420


>gi|330888571|gb|EGH21232.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 486

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 137/422 (32%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S          
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESD--------- 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                +  L    L G+       TN+  DH+  ++            F   LP    A+
Sbjct: 177 -----ASFLHLQPLVGV------VTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++ +                   +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPQVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVISAVRGGWPDRRLVMVSQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 431

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 135/399 (33%), Gaps = 46/399 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G +  V S     +        +  I ++ +       FAS  Y    ++I+A+TGT+GK
Sbjct: 50  GIDFAVKSPGIKPESKIIKTLEDKNIKIISDI-----EFASYFYK--TKDIVAITGTNGK 102

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +++ + V +I  + G  S+ +G          D                         + 
Sbjct: 103 TTITTLVNEILNKVG-KSYAVGNIGVGVMDVIDY--------------------DPKFIV 141

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            EASS  L    +D         TN+  DH+D+H+T + Y  AK  +++ L   +   + 
Sbjct: 142 CEASSFQLAY--IDKFHPHVAVITNITSDHLDWHKTVENYRKAKENIYKNLEEDDFLILG 199

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            + D          +        +G  G F   +++   H    +   ++  D       
Sbjct: 200 ASCDYVKTINAGVKNTFYYSYDDLGRPGLFTKDEEIIFRHFDGTLENIMKVSDVFIKGRH 259

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                + NA+ A     ++G+D  ++++ ++    V  R EFV T +             
Sbjct: 260 ----NIENAMAAILSAYSLGVDLEIIVDTIKNFKGVEHRIEFVRTFNGISYYNDSKGTNP 315

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +S ++ LK            V   GG     K     K+  D  D    T         E
Sbjct: 316 DSTDVALKAFEK-------SVLIIGG---YDKGSDFKKLLEDNKDKI--TSLVVMGATSE 363

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            I  E            +  EA+  A  +  +   +V+ 
Sbjct: 364 LIIKEATELGIETTRVKDMEEAVSVATTIARENHSVVLL 402


>gi|58038644|ref|YP_190608.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconobacter oxydans 621H]
 gi|81352635|sp|Q5FUJ4|MURC_GLUOX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|58001058|gb|AAW59952.1| UDP-N-acetylmuramate--alanine ligase [Gluconobacter oxydans 621H]
          Length = 477

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 131/431 (30%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGK 112
           GH     A   G A+ +V S+A    +          I VV   R+   L+      +  
Sbjct: 59  GHD----AANLGDAQVVVTSTAVKKDNPEVVAARAKLIPVV---RRAEMLAELMRLRWS- 110

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                    G +   +  + +             +     I ++  + R+ +        
Sbjct: 111 ------VAIGGTHGKTTTTSLVACVLEHARLDPTVINGGIIEAYGTNTRMGSGD------ 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VEA        RL  +       TN+  +H+D+  T++A   A   
Sbjct: 159 -----------WMVVEADESDGSFLRLPAVI---AVVTNMDPEHLDHWGTEEAMQ-AGYD 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   +P    A++  D    ++++ R  +          Q      K V          
Sbjct: 204 QFVSNIPFYGFAVLCVDHPQVQQMIPRLSDHRVITYGFSPQADIRAEKVVMDKRGATFEV 263

Query: 293 ISVEGKD------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +    +         F  P+ G   V N+L A  + + + I  +++   L     V  RF
Sbjct: 264 VVTNRQRNRSRRAGPFRLPMLGHHNVLNSLAAIAVALEMEISDSVIASALTTFKGVKRRF 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              G    G  I  DY H    +  +LK  R   +  +I V      R    + +  +  
Sbjct: 324 TRTG-EYNGISIVDDYGHHPVEIAAVLKAARQAGARNVIAV--MQPHRYSRLKVLFNEFC 380

Query: 407 LDL--ADIAIVTDDNPRSEDP--EKIRAEIIHGIPG-----FIEKGNRIEAIRTAIEMLN 457
             +  AD  IV D     E P     R  ++ G+        +   +          +  
Sbjct: 381 TCMNDADTVIVADVYAAGETPIEGAGRDALVEGLRDRGHRSVVPLPDPAHLAEMINAIAK 440

Query: 458 KQDVLVVAGKG 468
             D +V  G G
Sbjct: 441 PGDYVVCLGAG 451


>gi|189029215|sp|A5CD22|MURC_ORITB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 490

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 123/337 (36%), Gaps = 44/337 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V+SSA    +    A I +  PI+   +  + L+           +  +A++G+
Sbjct: 71  NGAGIVVISSAIKHNNPEYQAAILAKIPII---SRAEMLAELMR------SKVAIAISGS 121

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I +  GL    I     +++ A +  L           ++       T
Sbjct: 122 HGKTTTTALIACIFEACGLHPTVI-TGGIMNNRATNAYLGDGD-----YFIAEADESDAT 175

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+                   TN+  +H+D+++      +A  R F   LP +  
Sbjct: 176 FIKIPAT---------------IAVITNIDVEHLDFYKNFDNLISA-FRKFIINLPYDGF 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+   DD   + ++ +  +       +  +   I    +   +      + ++  +F   
Sbjct: 220 AVACIDDITVQNLIAKITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNE 279

Query: 304 F-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P  G+  + N+L A  + + + +D  ++ +  +    +  RF  +G      
Sbjct: 280 VIITQVTLPALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNFKGIARRFTKIG-EYNNI 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGC 390
            +  DYAH    +   +   R I     GR+I VF  
Sbjct: 339 TVIDDYAHHPAEIIATIDTARCIADKQQGRVIAVFQP 375


>gi|94309649|ref|YP_582859.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353501|gb|ABF07590.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 883

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 135/373 (36%), Gaps = 29/373 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK+ VA  V ++ Q SG  +             Q  +               L
Sbjct: 489 VGITGTNGKTVVAKLVARLLQLSGKHTGLACSDGLFLDRRQVEKGGRGDRASWDAGHRIL 548

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
            ++ V     E  S  +    L   +   G  TN G+     D++   +      +R   
Sbjct: 549 MNRAVEAAVFENDSGMILSQGLPYDRCQVGVVTNFGKPDHIGDFYVEDEDRMYNVLRTQV 608

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAH------------NAGCRVLSVGYQGKFIHLKKVC 283
           +++ K   A+I A DA   E+ +                A     + G +  F+   KV 
Sbjct: 609 DVVLKTGVAVINAADARLVEMAELCDGDVIFFGLSADLPAIATHRAAGKRAVFVRDGKVV 668

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH--- 340
                 +  ++ +       +     FQ+ N L A     A+GI + L+   +       
Sbjct: 669 LATGNSETALT-DVSAIPLTYAGRVAFQIENVLAAVATGWALGISNDLIRAGIVTFDVGQ 727

Query: 341 -VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VPGRF        G  + VD AH + +LE +   +    S R ++VFG G  R     
Sbjct: 728 VDVPGRFTL--FEHHGATVVVDDAHNAPALEALAAALDRFPSERRMLVFGAGVQRRDEDL 785

Query: 400 PIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG-------IPGFIEKGNRIEAIRT 451
              GK+     D   + +D   + E PE     ++         +   I++G R  A+  
Sbjct: 786 IEQGKVIGATFDRVFLCEDQSVKRELPETEARALLKKGLYEGRRVTKIIDEGARRAAVEA 845

Query: 452 AIEMLNKQDVLVV 464
           A+  L   D+LV+
Sbjct: 846 ALAQLVAGDLLVL 858


>gi|291166139|gb|EFE28185.1| tetrahydrofolate synthase [Filifactor alocis ATCC 35896]
          Length = 434

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 7/139 (5%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            +  + +  +   +P R E +  +     + +D +H  +    + K + T     I ++ 
Sbjct: 276 PSESICYGVEHTFIPARMEILSESPL---VLLDGSHNEDGAIALKKTLATFPKTSIKMIM 332

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           G   D++  K   + +    L+DI I    N PR+   +K+            +  +  E
Sbjct: 333 GVLKDKNIYK---ILENTATLSDIFIAVSPNHPRALSSKKLAEVSKQYCNNVKQASSLEE 389

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A+ +A   L + D+LV+ G
Sbjct: 390 AVNSAFLNLKESDILVICG 408


>gi|71908878|ref|YP_286465.1| cyanophycin synthetase [Dechloromonas aromatica RCB]
 gi|71848499|gb|AAZ47995.1| Cyanophycin synthetase [Dechloromonas aromatica RCB]
          Length = 857

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 119/372 (31%), Gaps = 29/372 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+ GT+GK++ +  + +I + +GL     G TST   + +  R+ T        A + L
Sbjct: 473 VAIAGTNGKTTTSRLIGRIFESNGLRV---GMTSTDGIYIEGKRIDTGDCSGPRSARNVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID--YHQTQQAYFNAKMRLFE 235
               V     E +  G+ +  L          TN+G        + T         R+  
Sbjct: 530 MHPDVDAAVFETARGGVLREGLGFDLCDVAVVTNIGLGDHLGLNYVTTVDELAVVKRVIV 589

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK--FIHLKKVCAIHNKQQVTI 293
           E +     A++ A D     +                         +    ++ ++   I
Sbjct: 590 ENVSPHGTAVLNATDPIVASMAIHCPGDVIFFARDRNHHVLATHRAQGKRVVYVERDAII 649

Query: 294 SVEGKDFDFLFP-------------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             EG       P                E  +  A     L     +    +   +    
Sbjct: 650 FGEGGRKKHRVPLANVPLTRNGSIGFQVENAMAAAATGWALGYDWPVIERALANFVSDAT 709

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGRF     + +G  +  DY H  ++++ ++K +  + + R  VV    GDR      
Sbjct: 710 TAPGRFNV--FDFKGATLIADYGHNPDAIQALVKAVENMPAVRRSVVISGAGDRRDEDIR 767

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIE------KGNRIEAIRTAI 453
              +I  +  D  I+  D   R     ++   +  G+                 AI TA+
Sbjct: 768 QQTEILGEAFDDVILYQDACQRGRADGEVIGLLRDGLANASRTKQIDAITGEFVAIDTAL 827

Query: 454 EMLNKQDVLVVA 465
             L   D+ ++ 
Sbjct: 828 NRLQPGDLCLIL 839


>gi|325518027|gb|EGC97835.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. TJI49]
          Length = 465

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 132/428 (30%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAENVDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 RERRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 SADGGHYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTD------DNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +  D  ++T+          + + + +   +   G    +   +  E      ++    D
Sbjct: 381 STVDALVLTEVYAAGEAAIATANGDALSRALRTAGKVDPVFVASVDEVPDALAKVAQNGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|150009088|ref|YP_001303831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937512|gb|ABR44209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
          Length = 445

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 106/361 (29%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G+     G               
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGN----------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  LD   +   K       N+  DH+D +  +
Sbjct: 141 ---SLALQV-----AEDPHAVYVIELSSFQLD--NMYDFKADIAIILNITPDHLDRYNYE 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   I + DD      + + H               +      
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHENGMKGY--T 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +     T +        L  L G   +YN+L +      + I    +   L     V 
Sbjct: 249 ENNQVVIETANGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++         VV   GG         + 
Sbjct: 309 HRLEKVLRVRGVDYINDSKATNVNSCWYALQSMT------TPVVLILGGTDKGNDYSEIE 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        I         D  K+ A     +    +  +  EA+  A +M +K D ++
Sbjct: 363 ELVSKKVHSLIF-----MGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|222529479|ref|YP_002573361.1| FolC bifunctional protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456326|gb|ACM60588.1| FolC bifunctional protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 432

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 9/127 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRP 400
             GRFE +        + +D AH  + ++++++N +   + + IV V G   D++  K  
Sbjct: 294 WNGRFEVLIDTPL---VVLDGAHNVDGMKVLVENCKIYLNDKKIVAVVGILKDKEYEK-- 348

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M  +   +A   I T   + +    EK   EI H   G     +  EAI+ A+ + N+ 
Sbjct: 349 -MISLIKSVAQRVIFTLVPSQKRAFSEKEALEISHKC-GVEFVPDFREAIKYALGLCNED 406

Query: 460 DVLVVAG 466
           D +++ G
Sbjct: 407 DAVIICG 413


>gi|150020782|ref|YP_001306136.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho melanesiensis
           BI429]
 gi|149793303|gb|ABR30751.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho melanesiensis
           BI429]
          Length = 431

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 85/246 (34%), Gaps = 11/246 (4%)

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                      E L   +     +       +    +N     ++ G +     +  +  
Sbjct: 174 TNIRYDHIENFESLQHYNYCFEKSCKNAKICISNSENNIEKNSITFGLKNADYKILSIEK 233

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +  KQ+V I       +FL  +PG   V NAL    LC  +G + + VL+  E   +   
Sbjct: 234 MGYKQKVKILTPYGIKNFLLNVPGIHNVLNALSVIALCFELGYEKSAVLKAFEDFVLPGR 293

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIM 402
           RF+          I  DY+HT   ++ +L   + +   + I +        + KR     
Sbjct: 294 RFQIYRNEEI--TIIDDYSHTPIEIKSLLLTAKEVFKNKKIQIIFQPHRFTRLKREWKEF 351

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE------ML 456
            K AL +AD   +T+     E   KI A+II          N  + +   IE        
Sbjct: 352 AK-ALSIADKVYITEVYGAFEKVGKISAKIIADEINATFLSNIEDILDIEIEPDNVYIFA 410

Query: 457 NKQDVL 462
              D++
Sbjct: 411 GAGDII 416


>gi|297564828|ref|YP_003683800.1| FolC bifunctional protein [Meiothermus silvanus DSM 9946]
 gi|296849277|gb|ADH62292.1| FolC bifunctional protein [Meiothermus silvanus DSM 9946]
          Length = 414

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 19/130 (14%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKR 399
             PGR E +G N     + +D AH       + + ++     +  ++V     D+D    
Sbjct: 278 WHPGRLERLGEN-----VLLDGAHNPEGAWALRQALKAHFPDKPLVLVLALSKDKDA--- 329

Query: 400 PIMGKIALDLADI--AIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                IA  L D+   I+T   +PRS  P    AE+    PG     N + A++ A+ M+
Sbjct: 330 ---PAIAQALGDLGPVILTRYASPRSRPP----AELRAHFPGARIVENPLPALQKALSMI 382

Query: 457 NKQDVLVVAG 466
            +  ++VVAG
Sbjct: 383 PRNGLVVVAG 392


>gi|221632098|ref|YP_002521319.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
 gi|221155634|gb|ACM04761.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
          Length = 462

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 86/422 (20%), Positives = 139/422 (32%), Gaps = 51/422 (12%)

Query: 56  GHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL-SLFASRLYGK 112
           GH       A       +VV+SA   Q       +   I +V   R  L    A+     
Sbjct: 64  GHDERHAQDA-----HLLVVTSAVRAQHPEVAAFAAQRIPIVK--RAALLGWLAASY--- 113

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AV GT GKS+    +      +G                    LT    I    
Sbjct: 114 ---RTIAVAGTHGKSTTCGMIALALDAAG--------------------LTPGFAIGAEV 150

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +S  +   ++         +    ++       N+  DH D    + +   A  R
Sbjct: 151 RDLGGTSARLPGGNLFVVEADEYDYSFLFLEPDIAVVLNVDHDHPDLFPDRASVARA-FR 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   L     A+++ADD  +  V     + G RV++ G         +           
Sbjct: 210 RFLARLRPVGTAVVWADDPVACAVADELQSRGHRVVTFGETA------EAAYRVLPDGAL 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               G  +     +PG     NA  A    + +G+   + +  LE  + V  RFE VG  
Sbjct: 264 RDPSGAIWPLALAVPGRHNRLNAAAAVAAVVQVGVPLVVAVRALEHFNGVGRRFEEVG-I 322

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLA 410
             G R+ +DYAH    +   +   R    + R+  VF       +  R +     AL+ A
Sbjct: 323 VNGVRVILDYAHHPREIAATIAAARERFPAARLWAVF-QPHTYSRTARFLTEFAHALEQA 381

Query: 411 DIAIVTDDNPRSEDPEKIR--AEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+A+V +     E P      A +   I     I   + + A  T    +   DV++V G
Sbjct: 382 DLAVVAEIYAAREQPLAGIDAAALASAIRRIPAIAVPDPMAAAETVGAAMRAGDVVLVLG 441

Query: 467 KG 468
            G
Sbjct: 442 AG 443


>gi|168187060|ref|ZP_02621695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295070|gb|EDS77203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
          Length = 458

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 128/386 (33%), Gaps = 47/386 (12%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            +    N  ++   N+  +++          P  I  +TG+ GK++  + V  I    G 
Sbjct: 85  PSMRIDNPALVKAKNSGAYITSEMEEFIKYCPARIFGITGSDGKTTTTTLVYNILMTEGY 144

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            ++  G        + +                    +    V +E SS  L        
Sbjct: 145 RTWVGGNIGNPLFASIE------------------EMKEEDKVVLELSSFQL---MTMEE 183

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           ++     TNL  +H+D H+  + Y +AK  +F+    K+   +   +D            
Sbjct: 184 EINCALVTNLSPNHLDIHKDMEEYVDAKKNVFKYQENKDLLVLNKDND----------IT 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGL 321
                 + G   KF   +++          + + GK+   L  +          L+AA  
Sbjct: 234 NSLTEEAKGRVMKFSRKEEIKDGAYLNGDKLVLLGKEICTLGDIKLKGMHNVENLLAAFC 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            ++       + +       V  R EFV             A +       L+       
Sbjct: 294 LVSEDASIESMAKVATTFTGVQHRCEFVKEIDGVKYYNDSIASSPTRTIAGLRAFE---- 349

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA---IVT--DDNPRSEDPEKIRAEIIHGI 436
            + +++   G D+     P+    A +  D     ++T    +   +  +K+  +    I
Sbjct: 350 -KPVILIAGGYDKHIPFEPL----AEEGYDKIKALVLTGLTKDKIKDAFDKVMKDRGISI 404

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           P ++E+G   EAI  A ++  + D++
Sbjct: 405 PIYMEEG-FNEAIYRAKDIAKEGDIV 429


>gi|126663519|ref|ZP_01734516.1| cyanophycin synthetase [Flavobacteria bacterium BAL38]
 gi|126624467|gb|EAZ95158.1| cyanophycin synthetase [Flavobacteria bacterium BAL38]
          Length = 872

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 116/365 (31%), Gaps = 28/365 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++    +  I + +G                   +  T  PI     L   
Sbjct: 485 IAVTGTNGKTTTTRLIAHIVKNNGFKVGFTTSDGIYVQNHMMEKGDTTGPISAEYIL--- 541

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEE 236
               V    +E +  G+ +  L   +   G  TN+  DH+                   +
Sbjct: 542 KDPTVEFAVLETARGGILRSGLGFSRCDIGIITNIQEDHLGISDINTLEDLARVKATVVK 601

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---VCAIHNKQQVTI 293
            + K+  AI+ A+D    ++ +  +                 L K   + A++    +TI
Sbjct: 602 SIKKDGWAILNAEDENCLKIAQDLNCNIAYFSLEENTPIVKQLAKEGKIVAVYENGFITI 661

Query: 294 SVEGKDFDFLFPLPGE--------FQVYNALVAAGLCIAIGIDSALVLEHLEKLH----V 341
                                   F + N L A       G  +  +   L+        
Sbjct: 662 KKGEWKIRIERATHVPLTLGGKAKFMIANVLAATLAAYLQGFKTDDISLSLQTFIPSAAQ 721

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR        +  ++ +D+AH       + + + ++ + + I +    GDR       
Sbjct: 722 TPGRMNI--FEFKKFKVLIDFAHNPAGYRGVEEYLSSVEATKKIGIIAGVGDRRDEDIKE 779

Query: 402 MGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIE 454
              IA  + D  I+  + + R    E+I   I+ GI               +EA++ AI 
Sbjct: 780 CATIAARMFDHIIIRQEKHLRGRTEEEINNLILEGIAASGKTVTHEIITKEVEALKHAIN 839

Query: 455 MLNKQ 459
                
Sbjct: 840 SAEDG 844


>gi|170720131|ref|YP_001747819.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida W619]
 gi|229620051|sp|B1J3L3|MURC_PSEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169758134|gb|ACA71450.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida W619]
          Length = 482

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 139/440 (31%), Gaps = 61/440 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IFV        GH     A    A+ +VVSSA +  +          I VV    + L+ 
Sbjct: 64  IFV--------GHR-AENAAH--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAE 111

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIG---PTSTISSFAQDN 160
                +G      +AV GT GK++  S +  +    G   +F IG     +  ++    +
Sbjct: 112 LMRYRHG------VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTS 165

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           R                             S     H    ++ +    TN+  DH+  +
Sbjct: 166 RYLIAEADE---------------------SDASFLH----LQPMVAVVTNIDADHMATY 200

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +            F   LP    A++  DD   +E++ +                     
Sbjct: 201 EGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVREILPQVKRPTVTYGFCEEADIRAINV 260

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
               +       +  + +  +    +PG   V NAL    +    GI    +++ L    
Sbjct: 261 SQKGMQTHFT-VLRRDREPLEVSVNMPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQ 319

Query: 341 VVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            V  RF+  G          +  DY H    +  ++K +R     R +V+        + 
Sbjct: 320 GVGRRFQVYGELPVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRT 379

Query: 398 KR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEA 448
           +       ++  D A++ ++ +  P  E+P       ++   I   G    I      E 
Sbjct: 380 RDLYDDFVQVLGD-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAEL 438

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
                 +L   D+L+  G G
Sbjct: 439 APLVKPLLRAGDILLCQGAG 458


>gi|324993410|gb|EGC25330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK405]
 gi|324995278|gb|EGC27190.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK678]
 gi|325697065|gb|EGD38952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK160]
 gi|327461684|gb|EGF08015.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1]
 gi|327469030|gb|EGF14502.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK330]
 gi|327489537|gb|EGF21330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1058]
          Length = 459

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 129/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASSKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEDFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +            +            V        +T   E         +PG   V NA
Sbjct: 241 MASHTQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQAAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGQVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+     R       RA  + G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAAR-----VKRAADLAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A       D++++
Sbjct: 403 VS-YLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|257056719|ref|YP_003134551.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharomonospora
           viridis DSM 43017]
 gi|256586591|gb|ACU97724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharomonospora
           viridis DSM 43017]
          Length = 458

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/411 (15%), Positives = 120/411 (29%), Gaps = 53/411 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G   +V S  +       T  +++ I V+ +                P   LAVTGT+GK
Sbjct: 61  GTRLVVTSPGWRPTAPLLTAAASSGIEVIGDVELAW-RIGQERPN--PPTWLAVTGTNGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++     + + + +G+ +   G        A     +T                    + 
Sbjct: 118 TTTVGMAESMLRSAGVDAVACGNVGFAVLDAVLAGHST--------------------LV 157

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS  L   R   +   A    N+  DH+                   +       + 
Sbjct: 158 VELSSFQLHWSR--SLAPSASVVLNVAEDHL----DWHGGLAEYAADKGTIHRGSGTVVA 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---- 302
              D +S+++ +       R +             V       +  ++      +     
Sbjct: 212 NLRDPWSRKLAEEHAPPEARRVGFTLDTPRPGELGVVEDLLVDRAFVADPVHAAEELGTL 271

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                 G   V NAL AA L  A G+    V E L        R   VG       I   
Sbjct: 272 ADVRPGGPHNVANALAAAALVRAYGVGPEAVAEGLRSFRPGAHRAVEVGEFDGVRYIDDS 331

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A   ++       I ++ +   +V    G  +      ++  +A  L  + ++      
Sbjct: 332 KATNPHA------AIGSLLAHPSVVWIAGGQLKGASVDELVAAVAERLRGVVLL------ 379

Query: 422 SEDPEKIRAEIIHGIPGFIEK-------GNRIEAIRTAIEMLNKQDVLVVA 465
             D +     +    P  + +            A++ A E+    D +++A
Sbjct: 380 GADADVFAEALARHAPDVLVRRIGSGDDEPMTAAVKAARELARPGDAVLLA 430


>gi|114570627|ref|YP_757307.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
 gi|122315581|sp|Q0AMW8|MURC_MARMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114341089|gb|ABI66369.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
          Length = 468

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 86/440 (19%), Positives = 145/440 (32%), Gaps = 64/440 (14%)

Query: 47  VAI--VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--L 102
           VAI       DG           A AIVVSSA    +          I VV   R+   L
Sbjct: 58  VAIGHKAANVDG-----------AGAIVVSSAIKPDNPELVAARAAKIPVV---RRAEML 103

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +           +  +AV GT GK++  S V  +   +G+    I     IS++  + ++
Sbjct: 104 AELMRL------KFAVAVGGTHGKTTTTSLVAVLMDAAGVDPTVI-NGGIISAYGSNAKV 156

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                      ++  + +         S+  +               TN+  +H++++ T
Sbjct: 157 GLGD------WMAVEADESDGSFLKLRSTVAI--------------VTNIDPEHMEHYGT 196

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHL 279
                 A    F E LP    A++  D    + +  R  +          Q         
Sbjct: 197 FDVLRQA-FFQFVENLPFYGFAVLCTDHPEVQSLASRVEDRRVITYGQNPQADARLENLK 255

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                     +  +  + +        P+ GE  V NA+ A      +G+  A     L 
Sbjct: 256 MDPSGATFDVRFRLRGQDETVWRDIFLPMMGEHNVLNAVAALATARELGLTEAGAKTALG 315

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +   V  RF   G   +G  I  DY H    +  +LK  R   +G++I V      R   
Sbjct: 316 QFGGVKRRFTRTG-EWKGAAIIDDYGHHPVEIAAVLKAARQAATGKVIAV--MQPHRYSR 372

Query: 398 KRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR------IEAI 449
              +    +     AD  +VT      EDP +   +  H +      G+R       +A+
Sbjct: 373 LHDLFDDFSTCFNDADSVLVTPVYTAGEDPIEGADQ-AHLVESLRSHGHRDAGATTRDAV 431

Query: 450 RT-AIEMLNKQDVLVVAGKG 468
                +   + DV+V  G G
Sbjct: 432 AADVAKRAGEGDVVVCLGAG 451


>gi|328955355|ref|YP_004372688.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
 gi|328455679|gb|AEB06873.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
          Length = 470

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 119/357 (33%), Gaps = 30/357 (8%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +   PE  +AVTGT+GK++  S   Q+   + +    +G     +    D R        
Sbjct: 105 WRLSPERWIAVTGTNGKTTTVSLTGQLLSAARIPCEVVGNIGETAISQVDRR-------- 156

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                     Q       E SS+ L           A    N+  DH+ +H+  + Y  A
Sbjct: 157 ----------QDGDWFVAELSSYQLAT--TSEFHPRAAVLLNITPDHLRWHRGFENYARA 204

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-VGYQGKFIHLKKVCAIHNK 288
           K+    + L +   AII  DD   + +  +   +  R+L         +    V A    
Sbjct: 205 KL-KILQNLDENDLAIIDVDDPGLRRLGSQVIASHRRILRLAHDDPASVDAAFVRAGRLV 263

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++              + G   V NAL A+   +  G   A V E L     +  R E 
Sbjct: 264 VRLDGIEHDLARVSELAVAGAHNVSNALAASASALLAGASDAAVSEGLRAFSSLEHRMEP 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G            A  ++++E  L        G  +++   G D+         ++   
Sbjct: 324 AGDIDGVRFYNDSKATNTDAVEKALTAF----PGDRVILLLGGYDKGTPLHGFATRVVQQ 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +        R  D     A    G+     E  + ++A+  A  +  + DV+++
Sbjct: 380 IGAVVCFGQARRRFMDAMTGAA---SGLDVDVAEADDLLDAVDVARSLACRGDVILL 433


>gi|262280678|ref|ZP_06058461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257578|gb|EEY76313.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 455

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 115/350 (32%), Gaps = 40/350 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG++ KS+V + +  + + +G      G                   + L K    L
Sbjct: 115 VAITGSNAKSTVTTLIGLMAKDAGKKVAVGGNLGRP-------------ALDLLKDQPEL 161

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  + +E SS  L+      +        N+  DH+D H     Y  AK      +
Sbjct: 162 -------LVLELSSFQLET--TSHLNAEVAVVLNMSEDHLDRHGDMWGYHQAK----HRI 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                  I   DDA S+ ++          L+     ++  L+         +    +  
Sbjct: 209 FQGVKKVIFNRDDALSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGTLWLARGLQRLIK 268

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               ++    G   V NAL    L  AIG+    +LE L++   +  R EFV T      
Sbjct: 269 SSDLYIQ---GMHNVANALACLALGEAIGLPMESMLETLKQFTGLEHRCEFVKTVDDVRY 325

Query: 358 IYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                     +    +        +  G++ ++ G  G + Q   P+   I    A + +
Sbjct: 326 YNDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQG-KGQDFAPLRSSI-EKYAKVVV 383

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       ED   I   I  G    +      EA+         +DV+++
Sbjct: 384 LI-----GEDASVIEQAI-QGTTKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|148556847|ref|YP_001264429.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
 gi|166224734|sp|A5VDC5|MURC_SPHWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148502037|gb|ABQ70291.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingomonas wittichii RW1]
          Length = 473

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 136/433 (31%), Gaps = 57/433 (13%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGK 112
           GH     A   G A  +V S+A    +    +     + VV   R+   L+         
Sbjct: 59  GHK----AENLGDAAVVVTSTAIKRGNPEVELALEKRVPVV---RRAEMLAELMRL---- 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             ++ +A+ GT GK++  S V  +    G+    I     I+S+  + RL          
Sbjct: 108 --KSTVAIAGTHGKTTTTSMVAALLDAGGVDPTVI-NGGIINSYGSNARLGASD------ 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VEA        RLDG        TN+  +H+D++ +     +    
Sbjct: 159 -----------WMVVEADESDGSFLRLDGTI---AVVTNIDPEHLDHYGSFDKVKDC-FV 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F E +P    A++  D    + ++ R  +          Q               +   
Sbjct: 204 EFVENVPFYGAALLCIDHPEVQAIIPRVRDRKVVTYGFSAQADVRGDNVTPIPGGNRFDV 263

Query: 293 ISVEG-----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +         +      P+PG   V NAL A G+ + + I  A++     K   V  RF 
Sbjct: 264 VVRNRDGDTRRIEGVTLPMPGRHNVQNALAAIGVALEMNISDAIIATGFAKFGGVKRRFT 323

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            VG    G     +  DY H    +  +L   R     ++I V      R    R +M +
Sbjct: 324 KVGEVPVGDGVATVIDDYGHHPVEIRAVLAAAREGARAKVIAVV--QPHRFTRLRDLMTE 381

Query: 405 --IALDLADIAIVTDDNPRSEDPEKIRAEII-------HGIPGFIEKGNRIEAIRTAIEM 455
              A + AD   V       E P                G               T    
Sbjct: 382 FQTAFNDADTVYVAPVYAAGEAPIDGVDAAALVAGLKQRGHRSAQVIAGPEALAATLAAT 441

Query: 456 LNKQDVLVVAGKG 468
           +   D+++  G G
Sbjct: 442 IAADDMVICLGAG 454


>gi|307824832|ref|ZP_07655055.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
 gi|307734190|gb|EFO05044.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
          Length = 480

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 131/418 (31%), Gaps = 53/418 (12%)

Query: 70  AIVVSSAYS--LQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
            +V SSA     ++         P++     R   L+      +G      +AV GT GK
Sbjct: 78  VVVASSAIDRSNEEIDEAYIQRIPVI----PRAEMLAELMRFRFG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S    I    G   +F IG    ++S   + +L           ++       + +
Sbjct: 128 TTTTSLTASILAEGGLDPTFVIG--GRLNSAGSNAKLGLG-----HYLVAEADESDASFL 180

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            ++                +    TN+ +DH+  ++          + F   LP    A+
Sbjct: 181 YLQ---------------PMMAIVTNIDQDHMATYEGSYQRLKDTFKEFLHHLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   + V+                       K   +H    V    +         
Sbjct: 226 MCLDDEGVRAVLPEISKPVTTYGVHEDADVRAVNIKQEGMHTSFDVIRRGDYPPLQVTLN 285

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDY 362
           +PG   + NAL A  +   + +  A +++ L     +  RF+  G    G     +  DY
Sbjct: 286 MPGWHNMLNALAAISVATKLAVGDAAIIKSLGAFKGIGRRFQLNGDLPMGEGKLTLVDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +   L+ +R     R  V+        R +       ++     D+ I+ D   
Sbjct: 346 GHHPREIAATLEALRQAWPDRRSVIVFQPHRYTRTRDLFEDFVQVLST-VDVLILMDVYA 404

Query: 421 RSE------DPEKIRAEII-HGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVVAGKGH 469
             E      D   +   I   G    +   N  E   I   I +    DV++  G G+
Sbjct: 405 AGETAIPGADGRALSRAIRVRGQVDPVFVENWEELPQILAGIVLA--DDVILTMGAGN 460


>gi|160891418|ref|ZP_02072421.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|317478449|ref|ZP_07937609.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
 gi|156858825|gb|EDO52256.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|316905338|gb|EFV27132.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
          Length = 443

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 118/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 93  EFAGRYTD---AKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN----------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +++   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 139 ---SLALQV-----ATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + +     G R     +           
Sbjct: 189 MQKYVDAKFRITQNQTPEDAFIFWNDDPI---IKRELDKHGLRAHLYPFAAVKEDGAIAY 245

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI    + + L     V 
Sbjct: 246 VEDGEVEINEPIAFNMEQEELALHGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVE 305

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   NS    L++     +G+ +++ G G D+      I  
Sbjct: 306 HRLEKVATVRGVSFINDSKATNVNSCWYALQS----MTGKTVLILG-GKDKGNDYTEIED 360

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E        +  G+P    +    +A+  A ++  K + ++
Sbjct: 361 LVREKCSALVYLGLHN---EKLHAFFDRL--GLPVADVQTGMQDAVEAAFKLAKKGETVL 415

Query: 464 V 464
           +
Sbjct: 416 L 416


>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
 gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
          Length = 492

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 146/406 (35%), Gaps = 40/406 (9%)

Query: 68  AEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  IVVS    L +   +  + S  P +        L   A          I AVTGT+G
Sbjct: 86  ASRIVVSPGVPLSEPILAYAMDSGIPTI------SELGFAAEAFPK--AVKIAAVTGTNG 137

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL-SSQGVTH 184
           KS+V +F  QI Q++G+ +F  G               TP      +   +         
Sbjct: 138 KSTVTTFTGQILQQAGVRTFVGGNLG------------TPFSDAACECFKFPSDDPPYQA 185

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ L+           G   NL  DH++ H++ + Y   K RLFE +   +   
Sbjct: 186 AVLEVSSYQLELP--GSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERMDSSKLSI 243

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I +A D + ++V  + ++   +       G  +  +   A+                   
Sbjct: 244 IPHA-DEFLRKVAYKYNSGSTKAWLGALPGVQLDSQARRAVVVVPTTKAEARLYLSGLKA 302

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YA 363
                 Q         L + +G+D   +   + +L  +P R + VG + +G     D  A
Sbjct: 303 VGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWINDSKA 362

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDD 418
              ++    +K +      R  V+   G  +   +   +G     L+D      AIVT  
Sbjct: 363 TNVDAAYTGIKGLAD----RKAVILLGGLAKVLDEDGSLG--FKKLSDLLQNHRAIVTF- 415

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               E  EK   E    IP F       +A+  A ++  + D++++
Sbjct: 416 GAFGEQIEKELKEANVSIPCFRS-LTMEDAVARAEKLSKQGDIILL 460


>gi|291166345|gb|EFE28391.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Filifactor
           alocis ATCC 35896]
          Length = 449

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 90/289 (31%), Gaps = 22/289 (7%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
             T    E SS  L+   +   K     F NL  DH++ H + + Y         +   K
Sbjct: 150 EHTWYVSELSSFQLEM--IKEFKCHIAGFLNLTPDHLNRHGSLKTYG-EMKSNIFKNQTK 206

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  A++  +D Y   + ++  +      +       I+LK+     N   +T  +  +  
Sbjct: 207 DDYAVLNYEDDYVCHLGEKLPSKVLYFSTKREVPFGIYLKEGYIYENITGITNKLFDRK- 265

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   + N L+A  +     I    +   L     V  R EFV        I  
Sbjct: 266 --NVLLAGNHNMENVLMAMCMAYCANISFDCMKSVLSNFEGVEHRLEFVEMIDGVRYIND 323

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL---ADIAIVTD 417
                 ++    ++        + I++   G D+       +              I+  
Sbjct: 324 SKGTNPDASVKAVEAFE-----KNIILIAGGMDKKVPFDKFVETFTGKHLGKVKKLILLG 378

Query: 418 DNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 + + I  +     G        N  EA+  A +     D++++
Sbjct: 379 ------ETKNIIKDCAQKHGFDSVDLVNNMEEAVDVAHQQAEGGDIVLL 421


>gi|296122915|ref|YP_003630693.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015255|gb|ADG68494.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
          Length = 896

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 113/353 (32%), Gaps = 26/353 (7%)

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +          +G T T   +  D R+ T        A + LS+  V    +E +  G+ 
Sbjct: 507 MAHIFRQQGKCVGMTCTDGVYIDDRRIDTGDCSGPRSARTVLSNPTVEAAVLETARGGIL 566

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLFEELLPKESPAIIYADDAYS 253
           +  L   +      TN+G          +         R+  E +  +  A++ A+D  +
Sbjct: 567 REGLGFDRCHVAIVTNIGEGDHLGMAGIETAEQLGRVKRVIVENVSPDGHAVLNAEDPIT 626

Query: 254 KEVMKRAHNAGCRVLSVGYQG---------------KFIHLKKVCAIHNKQQVTISVEGK 298
             +              G                  +   L       + +  +++    
Sbjct: 627 LAMADYCPGKVILFARSGDHPAVKSHLAKGGKAVYTQQNWLIAAEGSWSARVASLNNVPL 686

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            F  L     +  + +   A  L I      + +      +   P RF  +   + G  +
Sbjct: 687 TFSGLIGFQVDNTMASMAAAWALGIPFETIRSALETFSSDIRKAPARFNVL--EAAGATL 744

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +DY H S+++  +L  I  +  GR  +V+   GDR         ++     D  ++ +D
Sbjct: 745 IIDYGHNSSAIVALLDAINQLPHGRRRIVYTAAGDRRDEDIVRQAQLIASGFDEIVIYED 804

Query: 419 NP-RSEDPEKIRAEIIHGIPG----FIEKGNRIE--AIRTAIEMLNKQDVLVV 464
              R     ++   +  G+            R E  AI   ++ +   D++++
Sbjct: 805 QCTRGRADGEVIRLMRQGLSQGGRLSSILETRGEMVAIEMCLQRMEPGDLVLI 857


>gi|167752866|ref|ZP_02424993.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
 gi|167659935|gb|EDS04065.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
          Length = 450

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 122/362 (33%), Gaps = 35/362 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R  GK     + VTG++GK++  S + +I + +G +    G      +++      
Sbjct: 94  EFAGRYLGK--ARTICVTGSNGKTTTTSLIYKILRDAGYNVALGGNIGESFAYS------ 145

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        +++       +E SS  LD   +   +   G  TN+  DH+D +   
Sbjct: 146 -------------VATGDYDWYVLELSSFQLD--GMFRFRAHIGVLTNITPDHLDRYDYC 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +        I   DD    + + +      ++                
Sbjct: 191 FQNYVDAKMRITQNQNSRDFFIYSGDDEVIWQQLPKYDLRMKQLPFAAKNAVASGAGDAF 250

Query: 284 AIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +  K   T+  E  + D     +PG    YNA+ AA   +A G+    +   +     V
Sbjct: 251 LLDGKFTATVGRESVEIDTAKMRIPGLHNAYNAMAAALAALAAGVSPIRIRSSIYDFAPV 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E  G       I    A   +S    L++++     R +V    G D+     P+ 
Sbjct: 311 EHRLEPAGEIGGVAYINDSKATNVDSTWYALESMK-----RPVVWIAGGTDKGNDYEPL- 364

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            + A +     +    + R     K+       IP  I   +   A++ A +     DV+
Sbjct: 365 KRFAREKVHTLVCMGIDNR-----KLVESFTGIIPEIISTDSLDAAMQAARKASRPGDVV 419

Query: 463 VV 464
           ++
Sbjct: 420 LL 421


>gi|164686739|ref|ZP_02210767.1| hypothetical protein CLOBAR_00334 [Clostridium bartlettii DSM
           16795]
 gi|164604129|gb|EDQ97594.1| hypothetical protein CLOBAR_00334 [Clostridium bartlettii DSM
           16795]
          Length = 429

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 115/403 (28%), Gaps = 41/403 (10%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---- 151
           +N+ K L L  +    +    I+ V GT+GK SV SF+       G              
Sbjct: 23  ENSLKLLELLGN---PQDKLKIIHVAGTNGKGSVCSFIANSLHAQGYKVGLYTSPYLEKF 79

Query: 152 --------------------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
                                           +     T   I  A A  Y   QGV +V
Sbjct: 80  TERIRINGENIPEEDVARIVTLMREKIEQMVKEGFSYPTEFEIETAMAFYYYWEQGVDYV 139

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPA 244
           ++E    G           +A    +L  DHI     T       K  + +      S  
Sbjct: 140 ALEVGLGGRYDATNVIKDSLASVIVSLSLDHIGILGDTLGKIAYEKAGIIKPNGLTISYK 199

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    K+V K  ++    V       K   +                         
Sbjct: 200 QKEEAAEVIKDVCKEQNSEYIEVDFDSINVKKSDVSSQIFDCTIDGEKFEDMEIQLIGDH 259

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +         L A      + + +  + +        PGR E +          +D AH
Sbjct: 260 QVNNAVLALTVLKAIRDKRGVELSNEAIKKGFHD-TKWPGRIEKIKD---NPVFIIDGAH 315

Query: 365 TSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             +    +   + +     ++  + G   D+D      +  +      +   T D+ R+ 
Sbjct: 316 NEDGARSLTNALEKNFKGKKLTFLIGMLADKDIDSVLDL--LMDKFEKVVTTTPDSDRAI 373

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             E+++A+I       I      +A++  ++   K +V++ AG
Sbjct: 374 SCEELKAKIEKYGKEVIAIPKIEDAVQYVLDHAEKDEVIIAAG 416


>gi|89902196|ref|YP_524667.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodoferax
           ferrireducens T118]
 gi|118595682|sp|Q21SW7|MURD_RHOFD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89346933|gb|ABD71136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodoferax
           ferrireducens T118]
          Length = 506

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/439 (15%), Positives = 136/439 (30%), Gaps = 57/439 (12%)

Query: 57  HLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT-PILVVDNT------------RKFLS 103
             FI  A    A  +V +   ++         +   ++   NT             + L+
Sbjct: 54  AQFISGAFD--AALVVGTDVRAVFKSPGLSPLDVATVIEAANTIGIRATGELGLFSQALA 111

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +     +   +LAVTGT+GK++V +    + +R G S    G             L 
Sbjct: 112 DLKA--TQNYTPKVLAVTGTNGKTTVTALTGLLVERGGKSVAVAGNIGPTLLDTLIQHLA 169

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             +   +                +E SS  L+     G +  A +  N+ +DH+D+H + 
Sbjct: 170 AGTLPEV--------------WVIELSSFQLEGE--TGFEPSAAAVLNITQDHLDWHGSM 213

Query: 224 QAYFNAKMRLFE----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            AY  AK  +F      +L +E P ++       +  ++R               +    
Sbjct: 214 AAYVAAKAHVFGATGLMILNREDPQVMAMLPEPVRVKLQRPQLRAHVTFGADLPRRPGDF 273

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL--- 336
                      V      +          E  +   + A  L I    ++   L  L   
Sbjct: 274 GLEQVNGMLWLVRALEADETLKNRKGETPELFLQRLMPADALRIRGRHNAVNALAALALA 333

Query: 337 ---------EKLHVVPGRFEFVGTNSRGGRIYVDYA--HTSNSLEMILKNIRTITSGRII 385
                        +   R E       G    V++       ++   +  +  + S R +
Sbjct: 334 QAAGCALGPMLYGLRDYRGEPHRVAPIGIFNEVEFFDDSKGTNVGATVAALAGLGSERKV 393

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +V   G  + Q   P++  +    A   ++        D   +RA +       +E  + 
Sbjct: 394 IVILGGEGKGQDFAPLVDPV-SRYARAVVLI-----GRDAPLLRAALQATHVPLLEAESM 447

Query: 446 IEAIRTAIEMLNKQDVLVV 464
            +A+  A    +  D +++
Sbjct: 448 AQAVALANAQAHAGDAVLL 466


>gi|187479349|ref|YP_787374.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella avium 197N]
 gi|109892693|sp|Q2KVG1|MURC_BORA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115423936|emb|CAJ50488.1| UDP-N-acetylmuramate--alanine ligase [Bordetella avium 197N]
          Length = 468

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 145/425 (34%), Gaps = 58/425 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
           A+AIV S+A +  +          I VV   R   L+           +  +AV GT GK
Sbjct: 65  ADAIVTSTAVAGDNPEVIAARLARIPVVP--RAVMLAELMRL------KRGIAVAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +    G   +F IG    ++S   + +L     I +    S  S       
Sbjct: 117 TTTTSLVASVLAAGGLDPTFVIG--GRLNSAGANAQLGQGEFIVVEADESDASFLN---- 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH+D +    A   +    F + LP    A+
Sbjct: 171 ----------------LLPVMAIITNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD---- 301
           + ADDA  +E+M     +             +  + V A   + + ++  +G++ D    
Sbjct: 215 LCADDANVREIM--PFVSRPITTYGLSSDAQVRAENVQADGTRMRFSVRRQGREQDLPTL 272

Query: 302 -FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR------ 354
                LPG   V NAL A  +   +G+  A + + L     V  RF   G          
Sbjct: 273 EVELNLPGLHNVRNALAAIAVASELGVADAAICQALAGFKGVGRRFTQWGEFPVAEAQGG 332

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               +  DY H    +   L   R     R IV+        + +       ++    AD
Sbjct: 333 GRYSVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGT-AD 391

Query: 412 IAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEM-LNKQDVLV 463
             ++T+     E P        +   +   G    +   +   A+  A+   +   DVL+
Sbjct: 392 AVLLTEVYAAGEAPLVAADGRALARALRVAGKVEPLFVEDVA-ALPQAVRDFMRDGDVLI 450

Query: 464 VAGKG 468
           + G G
Sbjct: 451 LMGAG 455


>gi|227488336|ref|ZP_03918652.1| tetrahydrofolate synthase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091698|gb|EEI27010.1| tetrahydrofolate synthase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 486

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 28/141 (19%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGK--- 398
           PGR E V         ++D AH  +  + +   + R     R+I V  C GD+D      
Sbjct: 340 PGRLERVRATPT---TFIDAAHNPHGAKALAGAMSRDFDFRRLIGVMACLGDKDVDGVLT 396

Query: 399 --RPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAI 453
              P+M        D  + T +N PR    E++  +     G        N   A+  A+
Sbjct: 397 QLEPVM--------DEVVCTVNNSPRCLPAEELADKARAIFGEERVHLAENLPAAVELAV 448

Query: 454 EMLN---KQDVL-----VVAG 466
           E+     + D +     ++ G
Sbjct: 449 ELAEDPTEGDTVSGGGILITG 469


>gi|317499409|ref|ZP_07957676.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893281|gb|EFV15496.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 463

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 123/452 (27%), Gaps = 53/452 (11%)

Query: 40  IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPI------- 92
           I+ G     I G+       I     +GA+  +  +A ++ D    +     I       
Sbjct: 32  IKEG---FTISGSDIHTSDIIKHLEDKGAKVYLSQTADNITDDIDLVVYTAAINFDTNEE 88

Query: 93  --------LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                   + V      L            +N +AV+GT GK++  S +  I   +G + 
Sbjct: 89  YKEAIRRNIPVMKRATLLGQMMHNY-----QNAIAVSGTHGKTTTTSMLSYIL-LAGNTD 142

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             I     + +   + R+               S                          
Sbjct: 143 PTISVGGILDAINGNIRVGHSETFVTEACEYTNSFLEFF--------------------P 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 N+  DH+D+ +      ++      +L       I    +     V        
Sbjct: 183 KISIILNIEEDHMDFFKDLDDIRHSFREFAHKLPDYGYLIINGEIENIDYIVDGLKAEYA 242

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
              L               A  +                  + GE  V NAL A      
Sbjct: 243 TFGLENDSYDYCAKNIGYDAFGHAHFDYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKR 302

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           IGID   + + L        RFE  G       +  DYAH    +   L++ +      +
Sbjct: 303 IGIDVDTMKKGLLGFTGAKRRFELKG-TCNDFTVVDDYAHHPTEIRATLESAKNYPHNEL 361

Query: 385 IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIP 437
             VF      R         K AL L D  IVTD     E        + I   +     
Sbjct: 362 WCVFQPHTYSRTIAFLDDFAK-ALSLCDHVIVTDIYAAREKDTGIVSSKDIVDRMADYDV 420

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                    +  +  ++   K D+L+  G G+
Sbjct: 421 DVHYIKEFDDIEKFILKNCKKNDLLITMGAGN 452


>gi|220910205|ref|YP_002485516.1| cyanophycin synthetase [Cyanothece sp. PCC 7425]
 gi|219866816|gb|ACL47155.1| cyanophycin synthetase [Cyanothece sp. PCC 7425]
          Length = 918

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 10/131 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR              VDYAH     + +   +     G  I V G  GDR      
Sbjct: 725 QTPGRMNLFDLGRFS--ALVDYAHNPAGYQAVGDFVLK-WPGERIGVVGGPGDRRDEDLE 781

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAI 453
            +G ++  + D  IV  DD+ R          I  G+        + E  +   AI  A+
Sbjct: 782 TLGSLSAQIFDRVIVKEDDDTRGRARGNAAEWIKAGLLQVKPDYSYEEILDETTAISKAL 841

Query: 454 EMLNKQDVLVV 464
           E      ++V+
Sbjct: 842 ETAPDGSLVVI 852


>gi|239931807|ref|ZP_04688760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291440176|ref|ZP_06579566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343071|gb|EFE70027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 472

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 129/411 (31%), Gaps = 51/411 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + IV +  +              + V  +        A RL        LAVTGT+GK
Sbjct: 73  GTDLIVTAPGWKPDKPLFVAAERAGVPVWGDV-----ELAWRLRRPDSAPWLAVTGTNGK 127

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  I + +GL +  +G                     ++   + L  +    ++
Sbjct: 128 TTTVQMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGEEEYDVLA 169

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS+ L       ++  +    NL  DH+D+H + QAY  A  +       + +    
Sbjct: 170 VELSSYQLHW--APSLRAHSAVVLNLAPDHLDWHGSLQAY--AADKGRIYEGNRVACVYN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---- 302
            AD A    V +     GCR +             V       +  +    +        
Sbjct: 226 VADKATEDLVREADVEEGCRAVGFTLGTPGPSQLGVVEGILVDRAFVEDRYRSAQELAEV 285

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                P    V NAL AA L  A G+ +  V + L        R   V        +   
Sbjct: 286 SDVNPPAPHNVANALAAAALARAFGVPATAVRDGLRAFTPDAHRIAHVADVDGVAYVDDS 345

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  +++ E  L           +V    G  +      ++   A  L    ++      
Sbjct: 346 KATNTHAAEASLAAYEP------VVWIAGGLAKGATFDELVAGAAKRLRGAVLI------ 393

Query: 422 SEDPEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
             D   IR  +    P       +R +      A++ A  +    D +++A
Sbjct: 394 GRDRALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA 444


>gi|138894653|ref|YP_001125106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266166|gb|ABO66361.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 440

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 116/362 (32%), Gaps = 43/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R+        + +TG++GK++  + + ++ +  G      G    ++         
Sbjct: 93  ELAYRISEAP---FIGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGLVACEV------ 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          ++    +  E SS  L    +D  +       N+   H+DYH T+
Sbjct: 144 ------------AKEAKPDQWLVTELSSFQLA--GIDEFRPRIAVLLNIFDAHLDYHGTK 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK  +F      +  A++ ADD    +++                G+  +++   
Sbjct: 190 EAYAAAKANIFRNQTAHD-YAVVNADDPLVMDIVSSVRAQKVLFSVTKPLGEGAYVQDGT 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N + V    +         LPG+  + N L A       G  +  +   L     V 
Sbjct: 249 VYWNGESVIQIADIV-------LPGQHNLENILAAVAAAKLAGASNEAIRRVLTTFTGVK 301

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R ++V             A    + +  L           +++   G DR      ++ 
Sbjct: 302 HRLQYVAEVDGRRFYNDSKATNILATQKALAAFAD----EPVILLAGGLDRGNEFDALLP 357

Query: 404 KIALDLADIAIVTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +    A +          +   KI R     GI       N  +A+  A  +    DV+
Sbjct: 358 YLQQVKAMVLF-------GQTAAKIGRVAREAGIETVEYVDNVEKAVPVAFRLSEPGDVI 410

Query: 463 VV 464
           ++
Sbjct: 411 LL 412


>gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 788

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 138/461 (29%), Gaps = 69/461 (14%)

Query: 26  RERKINEVSSD------SRHIQA-G-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSS-A 76
           +   +    SD      +R ++  G  +F+        GH      I  G   +  S   
Sbjct: 24  QNIPVTG--SDLAESSTTRALKEAGATLFI--------GHS--ASYIKPGTTIVYTSDIK 71

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
            S  +F A  +   P+L   +    L               LAVTGT GK++ +S +  +
Sbjct: 72  ESNPEFIAAQQLKCPMLHRSDLLALL---------MQNRKTLAVTGTHGKTTTSSLLSWV 122

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G           I+    + +             S  S    T             
Sbjct: 123 LHHAGQD-PSFAVGGVIAQLNANAQHGKGDYFVAEADESDGSFLRYT------------- 168

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                     G  TN+  DH++Y+QT++A   A    F + +          DD+  +++
Sbjct: 169 -------PYGGIITNIDLDHMNYYQTEEALVGA-FHQFAKKVESADHLFWCGDDSRLQKL 220

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                + G              L  +       + +  +  +   +      +   YN L
Sbjct: 221 NIEGVSYG--------FNSDCQLHILQFTQKGWKTSFDITFRGLQYRQIEIAQIGSYNVL 272

Query: 317 --VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
              A              +          GR   +    +      DYAH  N + + L+
Sbjct: 273 NSAAVFGLALQMGIEEHAIRKALSTFPGVGRRCTMRGQKQEILFIDDYAHHPNEIAVTLR 332

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDP------EK 427
            IR     + ++V        + K  +   +   + AD+  VTD     E        +K
Sbjct: 333 AIRDAIGEKRLIVLFQPHRYSRTKDCLGTYRGIFESADMVYVTDIYSAGEQEIPGVTTQK 392

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  E+            R E +    + L   DV+V  G G
Sbjct: 393 VFDELSQDRSPDFYYSPRKEIVEKVYQTLFPHDVVVTLGAG 433


>gi|149184749|ref|ZP_01863067.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
 gi|148832069|gb|EDL50502.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
          Length = 475

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 139/415 (33%), Gaps = 54/415 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S+A           +    L +  TR  L+       G      +AV GTSGKS+V
Sbjct: 79  IVVASAAIEDSVPEIDRANELGCLRL--TRAELNSILFNTSGA----GIAVAGTSGKSTV 132

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +G  +  I   + + +F    R    + +      +    +    +++  
Sbjct: 133 TGMLGWILEATG-RAPTIMNGAVMKNFVSPERPFASAVVGSQSIYASEVDESDGSIALYR 191

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            + G                 N+  DH               +LF + L +   ++I AD
Sbjct: 192 PAVG--------------VLLNVSLDHKSME--------ELRQLFGDYLSRSRISVINAD 229

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLP 307
           D  +  ++ +A +     +        I    +     +Q   +    +  +      +P
Sbjct: 230 DEEALALLPQAKDVITFGIEQDKAQISIVPGSIAEGPVRQAAMVIDRHDKSEQALRLNMP 289

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A     A G+  A  +E L     +  RF+ VGT+     +  D+ H   
Sbjct: 290 GRHNLSNALAAIAGAAAAGVPVAASVEALAGFEGLARRFDIVGTSHAAITVIDDFGHNPE 349

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-------------LADIAI 414
                L+ +R   SGR++V F   G    G    MG                  + D   
Sbjct: 350 KCAATLRTLRAH-SGRVLVFFQPHG---YGPLRQMGDELAQVFVDELAEDDRVLMCDPVY 405

Query: 415 V--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAG 466
              T D  RSE  E+I   +            R  AI    + + +  D +VV G
Sbjct: 406 FGGTVD--RSEGSERIVRLVEQAGGRAEYIPTRK-AIEDRLVNLASPGDRIVVMG 457


>gi|207721506|ref|YP_002251946.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum MolK2]
 gi|206586666|emb|CAQ17252.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum MolK2]
          Length = 550

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 11/155 (7%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NA+ A  LC AIG+ ++ +L  L      P R E +                  + 
Sbjct: 372 HNATNAMAALALCRAIGLSASALLHGLRDYAGEPHRVELIAAFDDIEFFDDSKGTNVGAT 431

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +         VV   GG+        +       A   ++        D  +IR
Sbjct: 432 VAALSGLSKH------VVLIAGGEGKGQDFSPLAAPVAQYARAVVLI-----GRDAPQIR 480

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A +       +E      A++ A+      D +++
Sbjct: 481 AALADSGVELVEAPTLEAAVQEAVARAQPGDAVLL 515


>gi|146305955|ref|YP_001186420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina ymp]
 gi|145574156|gb|ABP83688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           mendocina ymp]
          Length = 448

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 118/356 (33%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I+A+TG++ KS+V + V ++   +G      G   T               +
Sbjct: 103 FARHAKAPIVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +    AY  
Sbjct: 150 DLLADDVEL-------YVLELSSFQLET--TDQLNAEVATCLNISEDHMDRYSGLPAYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++  DDA S+ ++             G          +   + +
Sbjct: 201 AKHRIFRGARQ----VVVNRDDALSRPLIADQ----VTCWEFGLGKPDFKRFGLLEENGE 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    E         + G     NAL A  L  A+G+    +L  L +   +P R ++
Sbjct: 253 KSLAFRFEALLPVSELKIRGAHNQSNALAALALGHAVGLPMEAMLATLRQFAGLPHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG  +         A    +    ++ +    +G+  +V   GGD        +      
Sbjct: 313 VGERAGVNYYDDSKATNVGAALAAIEGLGADIAGK--LVLIAGGDGKGADFSALKAPVAR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D E I A +    P  +      EA++   E+    D +++
Sbjct: 371 FCRAVVL-----LGRDAELIAAALGDAAP-LVRVTTLDEAVQRCSELAEAGDAVLL 420


>gi|315498851|ref|YP_004087655.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Asticcacaulis
           excentricus CB 48]
 gi|315416863|gb|ADU13504.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Asticcacaulis
           excentricus CB 48]
          Length = 488

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 99/301 (32%), Gaps = 25/301 (8%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A   +N P++   +  +  +   + L  K     +A+TGT+GKS+  + +  I + +G
Sbjct: 106 VKAAQEANVPVIG--DI-ELFARTLNALPEKQRPKTVAITGTNGKSTTTALIGHILKAAG 162

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
             +   G          +    T   I                     SS+ LD  +   
Sbjct: 163 RDAHIGGNIGIGVLDLPEMHAGTIYVIE-------------------TSSYQLDLTQTF- 202

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
            +       N   DH+D H     Y  AK R+F      E+  I   D+     V +   
Sbjct: 203 -RPDVAVLMNFSPDHLDRHGDMDGYIKAKKRIFLNQTAHETAVIGTDDEWSQAVVTEMTA 261

Query: 262 NAGCRVLSVGYQGKFIH-LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           +    ++ +  +      +  +  +        + +  D   +  L G     NA  A  
Sbjct: 262 HHSVNLIPISSRRTLGRGVYALNGVIYDATTDRARQIIDLKTVRTLTGRHNWQNACAAYS 321

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C A+G+   +++  +     +  R + +G       I    A  +++    + +  +  
Sbjct: 322 ACRALGLTVEVIVAGIRSFPGLDHRMQEIGRIKNVRFINDSKATNADAARQAMSSYDSFY 381

Query: 381 S 381
            
Sbjct: 382 W 382


>gi|168179188|ref|ZP_02613852.1| FolC bifunctional protein [Clostridium botulinum NCTC 2916]
 gi|182669920|gb|EDT81896.1| FolC bifunctional protein [Clostridium botulinum NCTC 2916]
          Length = 429

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 115/388 (29%), Gaps = 48/388 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL------------- 162
             + + GT+GK S  + +  + + SG                +                 
Sbjct: 40  RCIHIAGTNGKGSTTAMISTVLKESGYKVGMYTSPYIEEFEERIQINGHNITKEDLGYII 99

Query: 163 ------------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                             T    I +A    +   +    V       GL   RLD   +
Sbjct: 100 TKVANIVEKVENMGYGNPTEFEIITVAMFYYFCLKE----VDFAVIEVGLG-GRLDSTNV 154

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           +    + +     D+                 ++ K    +        K + K      
Sbjct: 155 LEPILSIITSISYDHMNILGETLKEITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKN 214

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-- 322
           C ++ V      I ++ +     +Q   +  +   ++    L GE Q+ N +        
Sbjct: 215 CELIKVEDNLINIEIEIIEKNMGQQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEK 274

Query: 323 --IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTI 379
                     + +    K    P R E V   ++     +D AH  + +E +  N+ +  
Sbjct: 275 LMKLGIKIEKIHIISALKKVKWPARLEIV---NKNPLTVIDGAHNIDGIESLKNNVSKYF 331

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPG 438
              ++I++ G   D+       M K  + LAD  + V   N R E  +++   ++     
Sbjct: 332 KYNKLILILGILKDKQVE---DMIKTLVPLADRVLTVVPHNDRGESSKELMHIVLKHNES 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +  E    A      +D++++ G
Sbjct: 389 CEHLEDYKECYDKAKFYCEDRDMILICG 416


>gi|226311413|ref|YP_002771307.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
 gi|254765985|sp|C0ZAJ4|MURC_BREBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226094361|dbj|BAH42803.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
          Length = 460

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 143/414 (34%), Gaps = 43/414 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA++IV S++ S +D    I      + V +  + L+   +   G      +AV G  GK
Sbjct: 63  GADSIVYSTSIS-KDNPEVIAGQALGIPVMHRSQMLARILNERTG------VAVAGAHGK 115

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S +  + +  G+          + S   + +  T   +      S  S        
Sbjct: 116 TTTTSMISHVLEECGVD-PTFIIGGELMSAGTNAKAGTSDYVIAEADESDGSFLEYR--- 171

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                             +    T++  DH+++              F   L  +  AI+
Sbjct: 172 -----------------PMYEIVTSIEPDHLEHFDGDFNNLKQAYVQFLSHLKPDGKAIL 214

Query: 247 YADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
             DD++ +EVM   ++         +   Q +F      C            + +  +  
Sbjct: 215 CIDDSHVREVMPSVEKTVVTYAVDPNFVAQAQFSATSIECGDRCSTCQVYHKDERLGELC 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  + NAL A  +C+ IG+    + + L        RF+ +G    G  +  DYA
Sbjct: 275 LVVPGKHNIANALAAIVVCLDIGLSFDKIAQALSTFSGAKRRFQIIGDAR-GVLVVDDYA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPR 421
           H    +   L   R  +  R+I VF      R         +   + AD  I+TD  +P 
Sbjct: 334 HHPTEIIATLSGARA-SGRRVIAVFQPQRYTRTYFLMDEFSRAFAE-ADEVIITDIYSPA 391

Query: 422 SED------PEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E+       E +  +I     P       + +      + L + D+++  G G
Sbjct: 392 GEEKIEGVTSEVLVQKIRTNSHPRAQYIPTKEQMQEHVFKELQEGDLVLTMGAG 445


>gi|294506461|ref|YP_003570519.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
 gi|294342789|emb|CBH23567.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
          Length = 879

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/415 (16%), Positives = 125/415 (30%), Gaps = 50/415 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +   T  +    + +    + L       +G      + V GT GK+
Sbjct: 477 ADVVVYSSAVDPDENPETREAERRRISLIPRAEMLGELIRMKFG------VGVAGTHGKT 530

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +    G     I     +++F  +        + +                 
Sbjct: 531 TTTSMAGLVVAEGGFDPTVI-VGGKVTAFGSNAITGEGDVLVI----------------- 572

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                  +  R       + +      +         A   A    +   +P    AI+ 
Sbjct: 573 ----EADEYDRTFLRLTPSLAVITSIEEDHLDVYEDLAAIQAAFTQYANSVPFFGAAILC 628

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   + ++           +           +   +  +  V +  E +       +P
Sbjct: 629 LDDPNVQAIVGDVERRVVTYGTTRQAEVRGENVRREGMTTRFDVVVRGE-RLGTIELHVP 687

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  +   + I    V + L     V  RFE  G    G  +  DYAH   
Sbjct: 688 GMHNVRNALAAVAVGQELEISFERVRDGLGTFTGVRRRFEKKG-EVGGITVLDDYAHHPT 746

Query: 368 SLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +E  L          R++ VF      R Q       + +   AD+ ++TD     E P
Sbjct: 747 EIEATLDAAHQGFPDRRVVAVFQPHMYSRTQNFMDEFAR-SFFNADMLVLTDVYGAREAP 805

Query: 426 EKIRAEIIHG--IPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKG 468
                 +  G       + G+R  A+              E++   DV+++ G G
Sbjct: 806 ---IEGVTGGRLAERAEQFGHR--AVHYVPEKTDLPGRLQELVGPGDVVLMLGAG 855


>gi|289704954|ref|ZP_06501369.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus SK58]
 gi|289558290|gb|EFD51566.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus SK58]
          Length = 495

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 11/151 (7%)

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +     +  +E       RFEF G    G R++ DYAH    +   +   R +     + 
Sbjct: 323 MAFEAAVRGVEAFRGTARRFEFRGAAR-GVRVFDDYAHHPTEVAAAVSAGRAVAGDARVH 381

Query: 387 VFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE------KIRAEIIHGI-P 437
           V        R +         AL  AD   V       E+P        I + +  G   
Sbjct: 382 VLFQPHLFSRTRDFAAEFA-AALSGADAVRVLPVYAAREEPMPGVDSSLIASRLTTGAAE 440

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   +R EA+R+        DV++  G G
Sbjct: 441 DRVVAEDRAEAVRSVAAGAETGDVVLTMGAG 471


>gi|257058868|ref|YP_003136756.1| cyanophycin synthetase [Cyanothece sp. PCC 8802]
 gi|256589034|gb|ACU99920.1| cyanophycin synthetase [Cyanothece sp. PCC 8802]
          Length = 877

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 14/177 (7%)

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSR 354
           +          F + NAL A     A G+D  ++ + +       +  PGR      N  
Sbjct: 681 NIPMTMGGMAPFMIANALAACLATFAQGVDIEMIRQGVRTFKASVNQTPGRMNL--FNLG 738

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                VDYAH     E +   +R     R+ VV G G  RD+    ++GKIA  + +  I
Sbjct: 739 DYHALVDYAHNPAGYEAVGGFVRNWKGERLGVVGGPGDRRDEDL-ILLGKIAAQVFNRII 797

Query: 415 VTD-----DNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLVV 464
           V +        R E  + I   I+            +  +AI   ++ +N+  ++V+
Sbjct: 798 VKEDDDRRGRDRGEVADLIIKGIVQENSQIEYEAILDETQAIEVGLDRVNRGGLVVI 854


>gi|226950973|ref|YP_002806064.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
 gi|254766043|sp|C1FNC3|MURD_CLOBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226843277|gb|ACO85943.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 458

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 116/364 (31%), Gaps = 55/364 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++    ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEDYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD  ++              ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNNLLVLNKDDDLTNEM----------ENEALGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+      +          L+AA   I   +    +         V  R E
Sbjct: 260 SNNKLTIQGKEVCDSKDIKLKGRHNIANLLAAFCMINKYVSIDSMKYVATNFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       + +++   G D+     P+    A 
Sbjct: 320 FIREVNGVKYYNDSIASSPSRTLAGLNSFE-----KPVILIAGGYDKKIPFEPL----AE 370

Query: 408 DLADIA---IVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNK 458
              D     I+  D        KI++     I         +   +  EA++ A  M  K
Sbjct: 371 GGYDKIKILILMGDTKN-----KIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEK 425

Query: 459 QDVL 462
            D++
Sbjct: 426 GDII 429


>gi|168187611|ref|ZP_02622246.1| folylpolyglutamate synthase [Clostridium botulinum C str. Eklund]
 gi|169294519|gb|EDS76652.1| folylpolyglutamate synthase [Clostridium botulinum C str. Eklund]
          Length = 436

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGK 404
                  +    + +D AH  + +  + ++I T  S + IV + G   D+       M K
Sbjct: 302 MGRFEILNNDPTVIIDGAHNIDGITKLKESIDTYVSYKDIVLILGILNDKQVE---DMVK 358

Query: 405 IALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +    A + I VT  + R+E  +++   +       I   +   A  TA+   N++D+L+
Sbjct: 359 VITPSAKMVICVTPHSERAEIAKELMRSVKTYNSNCIAIEDYKTAYETALNYCNREDLLL 418

Query: 464 VAG 466
           ++G
Sbjct: 419 ISG 421


>gi|226943454|ref|YP_002798527.1| UDP-N-acetylmuramate--L-alanine ligase [Azotobacter vinelandii DJ]
 gi|259509764|sp|C1DQA0|MURC_AZOVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226718381|gb|ACO77552.1| UDP-N-acetylmuramate--alanine ligase [Azotobacter vinelandii DJ]
          Length = 488

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 140/428 (32%), Gaps = 52/428 (12%)

Query: 59  FIPQAIAQGAEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI       A A  +VVSSA +  +          I VV    + L+      +G     
Sbjct: 67  FIGHRAENAASADVLVVSSAVNSSNPEVMTALERRIPVVPRA-EMLAELMRYRHG----- 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIG---PTSTISSFAQDNRLTTPSPIYLAK 172
            +AV GT GK++  S +  +    G   +F IG     +  ++    +R           
Sbjct: 121 -IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGSSRYLIAEADE--- 176

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                             S     H    ++ +    TN+  DH+D ++   +       
Sbjct: 177 ------------------SDASFLH----LQPMVAVVTNIDADHMDTYEGDFSRLKKTFV 214

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DD   +E++            +G       +    A        
Sbjct: 215 DFLHNLPFYGLAVLCVDDPVVREILPLVARPTI-TYGLGEDADIRAVDIRQAGMRTYFTV 273

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E    +    +PG   V NAL    +    GID   +++ L     V  RF+  G  
Sbjct: 274 LRQERAPLEMSVNMPGVHNVLNALATIAIACDEGIDDTAIVQGLSGFQGVGRRFQVYGEL 333

Query: 353 SR---GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIAL 407
                G  +  DY H    +  +LK +R     R +V+        R +       +I  
Sbjct: 334 QIEGGGVMLVDDYGHHPREVAAVLKAVRGGWPDRRLVMVYQPHRFTRTRDLYEDFVQILS 393

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQD 460
           D A++ ++ +  P  E+P        +   I            R   I   ++ +L   D
Sbjct: 394 D-ANVLLLMEVYPAGEEPIPGADSRSLCRSIRQRGQLDPIYVERGADIAPLLKPLLRPGD 452

Query: 461 VLVVAGKG 468
           +L+  G G
Sbjct: 453 ILLCQGAG 460


>gi|312622287|ref|YP_004023900.1| folc bifunctional protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202754|gb|ADQ46081.1| FolC bifunctional protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 437

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRP 400
             GRFE +        + +D AH  + ++++++N +   + + IV V G   D++  K  
Sbjct: 299 WNGRFEVLIDTPL---VVLDGAHNVDGMKVLVENCKIYLNDKKIVAVVGILKDKEYEK-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            M  +   +A   I T    +     +  A  I    G     +  EAI+ A+ + N+ D
Sbjct: 354 -MISLIKSVAQRVIFTLVPSQKRAFSEKEALEISHKCGVEFVPDFREAIKYALGLCNEDD 412

Query: 461 VLVVAG 466
            +++ G
Sbjct: 413 AVIICG 418


>gi|317504112|ref|ZP_07962114.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella salivae DSM
           15606]
 gi|315664784|gb|EFV04449.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella salivae DSM
           15606]
          Length = 458

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 113/364 (31%), Gaps = 41/364 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L   GT GK++ ++    I  +S +         + +             I +   
Sbjct: 111 SHKGLCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKNYGTNYILSKNSDYIVIEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               S                       ++      T+   DH+D + T++AY  +    
Sbjct: 171 EFDRSFHW--------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E + P  +  I    +      MK+    G +V     +    H + V   + +     
Sbjct: 211 TELIQPGGALIIHRNLE------MKQHVQEGVKVYDYSREAGDFHAENVVIDNGEICFDF 264

Query: 294 SVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               ++        P    + NA+ A  +    G  +  +   +     V  RF+F    
Sbjct: 265 ISPIENVARVNLGQPIPINIENAIAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDF-KIK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-- 410
                   DY H    +    ++++ +  GR I V        +  R    + A  L+  
Sbjct: 324 DNRHVFLSDYGHHPKEVLQSARSLKELFKGRKITVMFQPHLYSRT-RDFYLEFADALSNF 382

Query: 411 DIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+T+  P  E+P +      I   +   +   + K +  E +          DVLVV
Sbjct: 383 DEVILTEIYPAREEPIEGVTSMLIYDHLKPNVEKTMIKKD--EVLDYVKG--RDFDVLVV 438

Query: 465 AGKG 468
            G G
Sbjct: 439 LGAG 442


>gi|307706272|ref|ZP_07643086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
 gi|307618363|gb|EFN97516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
          Length = 450

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 129/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALSKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TATDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTATDFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K         +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELATKTQATVVPFSTLEKVDGAYLEDGQLYFRGEVVMAANEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDEIKGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|167773014|ref|ZP_02445067.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
 gi|167664947|gb|EDS09077.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
          Length = 453

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 131/406 (32%), Gaps = 39/406 (9%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA+ IV ++A      +  A   S TP +       FL+           E+ + V GT
Sbjct: 68  AGADLIVYTAAIMDDNPELRAAFASKTPTVERAELLGFLTGLY--------EDCICVCGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + + Q+   +GL                 N     S + + +A  +       
Sbjct: 120 HGKTTTTAMLTQMLLGAGLDPTA--VIGGKLPAIGGNGRAGESSLMVCEACEFKDHFLQL 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H  +                       N+  DH++Y  T +    +     +        
Sbjct: 178 HPDLSV-------------------ILNVDADHLEYFGTIENIIKSF---HKFADMTTRT 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I+   D  S   ++  +              +            +              
Sbjct: 216 IIVNGSDPNSMRAVEGINGKEIITFGWDEHFDYYPANIRRKGAQAEFDLCCGGRALTHLT 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   + NA  A    I  G+    + EHL +      RFE +G    G  I  DYA
Sbjct: 276 LHVPGLHNILNATAACAAAIKSGVPVTALGEHLAQFRGAGRRFEILG-EVHGVTIADDYA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPR 421
           H    + + L+  R +   R+  VF      R +       K AL LAD  ++++    R
Sbjct: 335 HHPAEIAVTLRAAREMDFRRVWAVFQPFTYSRTKLLMDDFAK-ALSLADRVVMSEIMGSR 393

Query: 422 SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            ++ E +  +++   IPG +      E     ++     D+++  G
Sbjct: 394 EKNTEGVYTSQLAEKIPGSVWFAGFEEIADYVMKHAESGDLVITLG 439


>gi|153955827|ref|YP_001396592.1| hypothetical protein CKL_3218 [Clostridium kluyveri DSM 555]
 gi|219856194|ref|YP_002473316.1| hypothetical protein CKR_2851 [Clostridium kluyveri NBRC 12016]
 gi|146348685|gb|EDK35221.1| FolC [Clostridium kluyveri DSM 555]
 gi|219569918|dbj|BAH07902.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 450

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRP 400
             GR E +G       + +D AH    + M+ +N  R      +I++ G   D++  K  
Sbjct: 309 WKGRLEVMGR---NPLVVIDGAHNIQGISMLKENICRYFQYNDMILILGILADKEVEK-- 363

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M K  + LA   + VT  + R +   +++  I        +  +  +A R A+   +K+
Sbjct: 364 -MVKTIVPLAKRVMAVTPKDKRGQIAGRLKTIIGKYNSNCEDFNDYEKAYRKALSYCSKE 422

Query: 460 DVLVVAG 466
           D+++V G
Sbjct: 423 DLILVCG 429


>gi|83816151|ref|YP_444704.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber DSM 13855]
 gi|109892736|sp|Q2S527|MURC_SALRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83757545|gb|ABC45658.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber DSM 13855]
          Length = 475

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 124/415 (29%), Gaps = 50/415 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V SSA    +   T  +    + +    + L       +G      + V GT GK+
Sbjct: 73  ADVVVYSSAVDPDENPETREAERRRISLIPRAEMLGELIRMKFG------VGVAGTHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +    G     I     +++F  +        + +                 
Sbjct: 127 TTTSMAGLVVAEGGFDPTVI-VGGKVTAFGSNAITGEGDVLVI----------------- 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                  +  R       + +      +         A   A    +   +P    AI+ 
Sbjct: 169 ----EADEYDRTFLRLTPSLAVITSIEEDHLDVYEDLAAIQASFTQYANSVPFFGAAILC 224

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   + ++           +           +   +  +  V +  E +       +P
Sbjct: 225 LDDPNVQAIVGDVERRVVTYGTTRQAEVRGENVRREGMTTRFDVVVRGE-RLGTIELHVP 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  +   + I    V + L     V  RFE  G    G  +  DYAH   
Sbjct: 284 GMHNVRNALAAVAVGQELEISFERVRDGLGTFTGVRRRFEKKG-EVGGITVLDDYAHHPT 342

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP 425
            +E  L         R +V         + +   M + A     AD+ ++TD     E P
Sbjct: 343 EIEATLDAAHQGFPDRRVVAVFQPHMYSRTQN-FMDEFACSFFNADMLVLTDVYGAREAP 401

Query: 426 EKIRAEIIHG--IPGFIEKGNRIEAIRTA----------IEMLNKQDVLVVAGKG 468
                 +  G       + G+R  A+              E++   DV+++ G G
Sbjct: 402 ---IEGVTGGRLAERAEQFGHR--AVHYVPEKTDLPGRLQELVGPGDVVLMLGAG 451


>gi|260576892|ref|ZP_05844875.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
 gi|259020929|gb|EEW24242.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
          Length = 479

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 84/468 (17%), Positives = 146/468 (31%), Gaps = 62/468 (13%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQ 80
           + +Q  + K ++++   R +  G  F    G +         A   G  A+VV S+   +
Sbjct: 36  YRVQGSDAKASKITD--RLVSLGATFF--EGQR---------AANLGEAAVVVISSAIKK 82

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS 140
                  +    L V    + L+           ++ +A+ GT GK++  + V  +  + 
Sbjct: 83  GNPELEEARRRQLPVVRRAEMLAELMRL------KSNIAIAGTHGKTTTTTMVATLLDKG 136

Query: 141 GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
           G     I     I ++  + R                       + VEA       +RL 
Sbjct: 137 GFDPTVI-NGGVIHAYGSNARAGEGE-----------------WMVVEADESDGSFNRLP 178

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  +H+++  T +         F   +P    A+   D A  + ++ R 
Sbjct: 179 ATI---AIVTNIDPEHMEHWGTFENLRK-GFYDFVSNIPFYGLAVCCTDHAEVQALVGRV 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---------DFDFLFPLPGEFQ 311
            +          Q     +                                  P+PG+  
Sbjct: 235 TDRRIVTFGFNAQADVRAINLTYDAGVAHFDVALQGEGPDDTGKIAVIEGCTLPMPGDHN 294

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V NAL A  +   +G+  A + E L     V  RF  VG    G  I  DY H    +  
Sbjct: 295 VSNALAAIAVARHLGMKKAEIREALAGFAGVNRRFTRVGV-VNGVTIIDDYGHHPVEIAA 353

Query: 372 ILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-- 425
           +L+  R  T+G     V+      R      +          AD+  + +     EDP  
Sbjct: 354 VLRAARQATAGTPGARVIAVHQPHRYTRLHSLFDDFCTCFNEADVVAIAEVYAAGEDPIP 413

Query: 426 -----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                + +   I HG        N  +  R   E     D++V  G G
Sbjct: 414 GASRDDLVAGLIAHGHRHARAILNEDDLERLVREQARPGDMVVCLGAG 461


>gi|86282551|gb|ABC91614.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CFN
           42]
          Length = 452

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 21/283 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 154 LPADVAVITNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIE 212

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-------FPLPGEFQVYN 314
           +          Q      K V     +    + +  +             P+PG   + N
Sbjct: 213 DRKIITYGENPQADV-RFKNVRIDGTRSIFDVEIRRRRTGQRTELKGLVMPMPGRHNISN 271

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  A  +   +GI S  + + L     V  RF   G    G +I+ DY H    ++ +LK
Sbjct: 272 ATAAIAVANRLGISSEDIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLK 330

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK----- 427
             R    GRII V      R      +  + A     AD  ++       ED  +     
Sbjct: 331 AAREACKGRIIAV--HQPHRYTRLASLFEEFAACFNDADSILLAPVYAAGEDAIEGVDST 388

Query: 428 -IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            + + I  G        +  E +     E+    D +V+ G G
Sbjct: 389 SLVSRIKSGGHRDARFLSSAELLPEMVAEVAKPGDFVVLLGAG 431


>gi|168180985|ref|ZP_02615649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
 gi|182668046|gb|EDT80025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
          Length = 458

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 116/364 (31%), Gaps = 55/364 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V ++ ++    ++  G   T      +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEDYRTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVW 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+         +   DD  ++              ++G   KF  ++KV      
Sbjct: 210 AKKNIFKYQSSNNLLVLNKDDDLTNEM----------ENEALGDVLKFSLVEKVYNGACL 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               ++++GK+      +          L+AA   I   +    +         V  R E
Sbjct: 260 SNNKLTIQGKEVCDSKDIKLKGRHNIANLLAAFCMINKYVSIDSMKYVATNFSGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           F+   +         A + +     L +       + +++   G D+     P+    A 
Sbjct: 320 FIREVNGVKYYNDSIASSPSRTLAGLNSFE-----KPVILIAGGYDKKIPFEPL----AE 370

Query: 408 DLADIA---IVTDDNPRSEDPEKIRAEIIHGIP------GFIEKGNRIEAIRTAIEMLNK 458
              D     I+  D        KI++     I         +   +  EA++ A  M  K
Sbjct: 371 GGYDKIKILILMGDTKN-----KIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEK 425

Query: 459 QDVL 462
            D++
Sbjct: 426 GDII 429


>gi|325299145|ref|YP_004259062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318698|gb|ADY36589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 444

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 113/362 (31%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I +++GL+    G               
Sbjct: 95  EFAGRYTN---AKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIG------------ 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  +E SS  LD   +           N+  DH+D +  +
Sbjct: 140 -------QSLAYQVAECNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYDYK 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +        + + DD     + +  H  G       +  K        
Sbjct: 191 MQNYIDAKFRIIQNQTDNDAFVFWNDDPI---IREELHKYGIHGQYYPFAEKREDGLAAF 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +  +K   T  +E         L G   ++N++ A       GI  + + E L     V 
Sbjct: 248 SEQDKVYFTKPIEFNMEQEELALTGTHNLFNSMAAGISANIAGIRKSCIREALSDFKGVE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    LK+++T       V+   G D+      I G
Sbjct: 308 HRLEKVARVRGVDYINDSKATNVNSCWYALKSMKT-----KTVLILGGKDKGNDYNEIAG 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
            +    + +  +   N       +       G      +  +  +A+  A  M    + +
Sbjct: 363 LVREKCSGLIFLGLHN-------EKLHAFFDGFGLPIADVQSMKDAVDAAYRMAKNGETV 415

Query: 463 VV 464
           ++
Sbjct: 416 LL 417


>gi|113971897|ref|YP_735690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
 gi|122943467|sp|Q0HE84|MURC_SHESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113886581|gb|ABI40633.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
          Length = 488

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 157/441 (35%), Gaps = 56/441 (12%)

Query: 47  VAIVGNKED---GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-- 101
           + ++G K     G   + QA     + +VVS+A + ++          I +V   R+   
Sbjct: 61  LCLLGAKIHIGHGADNVQQA-----DVVVVSTAINPENPEIIAAKELRIPIV---RRAEM 112

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+      +G      +A+ GT GK++  S +  +  ++G     +     ++S   + R
Sbjct: 113 LAELMRYRHG------VAIAGTHGKTTTTSLIASLYGQAGRDPTFV-IGGLLNSAGTNAR 165

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L T   +      S  S                       ++ +    TN+  DH+D + 
Sbjct: 166 LGTSRYLIAEADESDASFLH--------------------LQPMVSVVTNIEADHMDTYG 205

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                  +    F   LP    A++  DDA  +E+M R                      
Sbjct: 206 GDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRHMITYGFSDDADV--QALN 263

Query: 282 VCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                ++ + T+  +GK+  D L  LPG+  V NAL A  +     ID + +++ L +  
Sbjct: 264 FQQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQ 323

Query: 341 VVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRD 395
            +  RF+ +G  +       +  DY H  + +   +K  R     + +V+        R 
Sbjct: 324 GIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRT 383

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEA 448
           +       ++     D  ++ +     E P        +   I + G    I   +  + 
Sbjct: 384 RDLYEDFIEVLSQ-VDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQL 442

Query: 449 IRTAIEMLNKQDVLVVAGKGH 469
                ++L + D+L+  G G+
Sbjct: 443 AEVLPDVLQEGDLLLTQGAGN 463


>gi|317472438|ref|ZP_07931762.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900082|gb|EFV22072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
           3_2_56FAA]
          Length = 454

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH+D H T + Y   K  + +     +   + Y
Sbjct: 164 EISSFQLET--IQDFCPKVSAVLNITPDHLDRHGTVEVYAKTKESIGKNQTGDQVMVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  ++ + +RA+             + ++ K    +  + +   ++  +       L 
Sbjct: 222 -EDPVTRNMAERANARVVFFSLDHELEEGVYFKDGSFMLAENKTVQTICTE---ADINLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  +   +G+ +  + + +     V  R E+V T              ++
Sbjct: 278 GGHNYENILAAIAVSHYMGVPAEQIRKGVSGFKGVEHRIEYVDTIKDVAYYNDSKGTNTD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +K        R   + G G D+       +      + ++ ++          EK
Sbjct: 338 AAIKGIKA-----MNRPTFLIGGGYDKKAEYDDWIEAFDGKVKELILL------GATAEK 386

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G    +      EA+  A +     D +++
Sbjct: 387 IGKTAEAHGFSRIVYVDTLEEAVEYASKHAVSGDAVLL 424


>gi|307265454|ref|ZP_07547010.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919568|gb|EFN49786.1| cyanophycin synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 819

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 131/387 (33%), Gaps = 25/387 (6%)

Query: 65  AQGAEAIV-VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
             GA   +  S    +  + +  +         N  K +         K    I+++TGT
Sbjct: 434 ENGAIIEINASPGIRMHHYPSKGKP-------RNVAKAIVDMLFPKGSKATIPIISITGT 486

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V      I +  G +                 +     P      L+  +     
Sbjct: 487 NGKTTVTRMTAHILKTYGYTVGMTCTDGIYIDDTCVYKGDNTGPKSARTCLADKNIDA-- 544

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK-MRLFEELLPKES 242
              +E +  G+ +  L       G  TN+  DH+     +     A    L  E + ++ 
Sbjct: 545 -AVLETARGGIIREGLGYDLADVGVITNISEDHLGIDGIETLEDLAFVKALVVEAVKEDG 603

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----------GKFIHLKKVCAIHNKQQVT 292
            +++ ADD  +  + +RA                       G  +++K    +    Q+ 
Sbjct: 604 YSVLNADDPMTTYLAQRAKGKIIYFSRYDNNLTVKKHIEKGGIAVYVKDGVIVIANGQII 663

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--EFVG 350
             V+ ++          + V NAL A      + +   ++ + ++  +         F  
Sbjct: 664 PVVKIEEIPAALSGKVLYNVENALAAIAASYGVKVPVNIIAKGIKTFYCDTTHNPGRFNL 723

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            N    R+ VDY H    ++ +++  + + + R+I V G  GDR       +G+I     
Sbjct: 724 FNVGNFRVLVDYGHNIAGIKSVIEAAQKLDANRLIGVIGVPGDRINSSILKVGEICGQGF 783

Query: 411 DIAIVTDD-NPRSEDPEKIRAEIIHGI 436
           D   V +D + R   P ++   +  G 
Sbjct: 784 DFIYVKEDLDLRGRKPGEVAKLLEQGA 810


>gi|148994421|ref|ZP_01823644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|168488368|ref|ZP_02712567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|147927257|gb|EDK78291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|183573146|gb|EDT93674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|332074492|gb|EGI84968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17570]
          Length = 450

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 120/389 (30%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TASDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 TSKTEATVVAFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +     +D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|162329635|ref|YP_470341.2| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli CFN 42]
 gi|109892728|sp|Q2K6C2|MURC_RHIEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 471

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 96/283 (33%), Gaps = 21/283 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-------FPLPGEFQVYN 314
           +          Q      K V     +    + +  +             P+PG   + N
Sbjct: 232 DRKIITYGENPQADV-RFKNVRIDGTRSIFDVEIRRRRTGQRTELKGLVMPMPGRHNISN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  A  +   +GI S  + + L     V  RF   G    G +I+ DY H    ++ +LK
Sbjct: 291 ATAAIAVANRLGISSEDIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLK 349

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK----- 427
             R    GRII V      R      +  + A     AD  ++       ED  +     
Sbjct: 350 AAREACKGRIIAV--HQPHRYTRLASLFEEFAACFNDADSILLAPVYAAGEDAIEGVDST 407

Query: 428 -IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            + + I  G        +  E +     E+    D +V+ G G
Sbjct: 408 SLVSRIKSGGHRDARFLSSAELLPEMVAEVAKPGDFVVLLGAG 450


>gi|308177861|ref|YP_003917267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
 gi|307745324|emb|CBT76296.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
          Length = 509

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 127/422 (30%), Gaps = 61/422 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ ++VS  ++ ++       +  I +  +    L+       G      L +TGT+GK+
Sbjct: 91  AQLVMVSPGWNPRNPVIAEAESKGIAIWSDIE--LAWRVQNRAGHTAPQWLVITGTNGKT 148

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +     + I +  GL +  +G   T                      +          +V
Sbjct: 149 TTVGMTESILRADGLKAIAVGNVGTP------------------ILDAVREPVDYDVFAV 190

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L  H    I  +A    NL  DH+D+H   + Y  AK +++E        AI  
Sbjct: 191 ELSSFQL--HYTHTISPVASVVLNLAEDHVDWHDGFENYKAAKAKIYERTQIA---AIFN 245

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-------F 300
           A D  + ++++ A                                   E K         
Sbjct: 246 AADEATIKMVEDADVVEGCRAIGFTTDTPAVSMVGVVEGLLVDRAFLEERKTSAVELIAL 305

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             +  +       NA  AA L  A G+    V   L+       R + V        +  
Sbjct: 306 KEIGEIVPRHTAANAAAAAALTRAYGVHPEAVAAGLKNFDSGDHRIQAVARKDDILWVND 365

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   ++ +  L           +V    G  +      ++ K A  LA + ++  D  
Sbjct: 366 SKATNPHAADASLAAFTR------VVWIAGGLSKGVEYGDLVAKHAQRLAKVLLIGTDT- 418

Query: 421 RSEDPEKIRAEIIHGIPGFIEKG--NRIE---------------AIRTAIEMLNKQDVLV 463
                  +R  +    P        +  +               A+  A E+    D ++
Sbjct: 419 -----AGLREALAAHAPEVEVIDITDSAQDSEGAAPSGAQVMTRAVSKAAEIAQAGDTVL 473

Query: 464 VA 465
           +A
Sbjct: 474 MA 475


>gi|167630789|ref|YP_001681288.1| folylpolyglutamate synthase [Heliobacterium modesticaldum Ice1]
 gi|167593529|gb|ABZ85277.1| folylpolyglutamate synthase [Heliobacterium modesticaldum Ice1]
          Length = 459

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 14/160 (8%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRI 358
             PL G  Q  N   A  +  A             +        PGR E +G        
Sbjct: 268 TPPLSGRHQQANLATAVAVLEAAKEKGFDWRADHLEAGLGQVSWPGRLERIGP------F 321

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
            +D AH       +   +R   +G+ + V G   D++   R  +  I   LA   IVT  
Sbjct: 322 LLDGAHNVAGALSLAAALREEGAGKYVFVLGMLADKE---RERVVDILAPLAKAIIVTRP 378

Query: 419 N-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           N PR+ + + + +             +  EA+  A     
Sbjct: 379 NSPRAGEWQALASLAARRCDSVTVVSDIGEALEMARLSAQ 418


>gi|308188236|ref|YP_003932367.1| UDP-N-acetylmuramate-alanine ligase [Pantoea vagans C9-1]
 gi|308058746|gb|ADO10918.1| UDP-N-acetylmuramate-alanine ligase [Pantoea vagans C9-1]
          Length = 454

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 106/357 (29%), Gaps = 32/357 (8%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  GL    I       +F    +L       +   
Sbjct: 106 DRWVLAVAGTHGKTTTAGMAAWILEACGLEPGFI-IGGVPGNFDVSAKLGKSPFFVIEAD 164

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +        V  S   L  +             NL  DH D     +A    +   
Sbjct: 165 EYDCAFFDKRSKFVHYSPRTLILN-------------NLEFDHADIFDDLRAIQK-QFHH 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              ++P +   ++   D      +K+    GC               K            
Sbjct: 211 LVRIVPGQGKILLPEHDPN----LKQVMAMGCWSEQESVGEHGRWQAKKLTNDASHWEIW 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+      + L        R E  G   
Sbjct: 267 LDGEKVGEVKWALVGEHNMHNGLMAIAAARHVGVKPEDAGQALNTFINARRRLELRG-EV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL---- 409
              ++Y D+AH   ++   L  +R+   GR  ++       +  K   MG    DL    
Sbjct: 326 NNIKVYDDFAHHPTAILATLAALRSKVGGRARILAVLEPRSNTMK---MGVSKNDLAPSL 382

Query: 410 --ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD   +   +     P ++       IP      +    +    +     D ++V
Sbjct: 383 ARADEVFLFQPHH---IPWQVSDVAEACIPPAHWSADIDTLVEMVAKAAQPGDTILV 436


>gi|170016886|ref|YP_001727805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
 gi|226711918|sp|B1MXV9|MURD_LEUCK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169803743|gb|ACA82361.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
          Length = 449

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 110/354 (31%), Gaps = 41/354 (11%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++AVTG++GK++  S ++ + + SG +    G   T  S      LT+   + L
Sbjct: 107 SSFDGRLIAVTGSNGKTTTTSLIRDMLKASGQTVTTAGNIGTPVSEVVG-PLTSQDTLLL 165

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                            E SS  L    L  IK      TN+  +H+DYH  +  Y  AK
Sbjct: 166 -----------------ELSSFQL--MGLPDIKPDIALITNIFANHLDYHGDRAHYVAAK 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            ++ +     +   +            K                 +     +        
Sbjct: 207 YQITKNQTANQKLILNADGADTPDFAAKTQAQVVLFSRDNSSDMAWTDGHDLIIEGEHVM 266

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                          L G   + N L A  +    G+ +  +   LE    VP R +++ 
Sbjct: 267 PL---------TAIKLVGPHNLENILAAITVSKIAGVTNEAIKSVLEVFGGVPHRLQYLL 317

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T +         A    + +  L +          +    G DR      ++  ++    
Sbjct: 318 TENGVRYYNDSKATDIEATQTALDSFHE-----PTIWLAGGLDRGDDLTRLIPNLS--HV 370

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + I        E  +K+ A         I   +  EA+  AI   +  DV+++
Sbjct: 371 KLVI-----AFGETQQKVVAIARQAHKPVITVTSVKEAVPVAISSSSAGDVVLL 419


>gi|56419653|ref|YP_146971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           kaustophilus HTA426]
 gi|62900465|sp|Q5L0X7|MURD_GEOKA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56379495|dbj|BAD75403.1| UDP-N-acetylmuramoylalanine D-glutamate ligase (D-glutamic acid
           adding enzyme) [Geobacillus kaustophilus HTA426]
          Length = 451

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 115/351 (32%), Gaps = 44/351 (12%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + +TG++GK++  + + ++ +  G      G    ++                      
Sbjct: 114 FIGITGSNGKTTTTTLIYEMLKADGQDPLLAGNIGLVACEV------------------A 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             ++    +  E SS  L    +D  +       N+   H+DYH T++AY  AK  +F  
Sbjct: 156 REAKPGQWLVTELSSFQLA--GIDKFRPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRN 213

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
              ++  A++ ADD     +     +      +    G+  +++             + +
Sbjct: 214 QTERD-YAVVNADDPLVMNIASSVRSQKVLFSATKLLGEGAYVQDGAIYW-------NGD 265

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    LPG+  + N L A       G     + + L     V  R ++V       
Sbjct: 266 PVIRIADIVLPGQHNLENILAAVAAAKLAGASDEAIRQVLATFSGVKHRLQYVAEIDGRR 325

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV- 415
                 A    + +  L       +G  +++   G DR      ++  +        ++ 
Sbjct: 326 FYNDSKATNILATQKALSAF----AGEPVILLAGGLDRGNEFDDLLPYL--QQVKAVVLF 379

Query: 416 --TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             T D        +I      GI       N  +A+  A E+    DV+++
Sbjct: 380 GQTAD-----KIGRIAQ--KAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           tasmaniensis Et1/99]
 gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 438

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 132/400 (33%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPSLIAAAQAGVEIVGDVE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLP-------------ALTLLQQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIYENATACVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +              G          +        + +  E         L 
Sbjct: 213 ADDAMTMPIRGADARCVSFGADFGDYH-------LTRQQGSTWLRVQGEKVLNTDEMHLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQLVHEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +    +G + ++ G  G   D     R + G+             D     +
Sbjct: 326 STEAALNGL--HPAGTLWLLLGGDGKSADFTPLTRYLQGERIRVYC----FGRD---GAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI       ++     EA+R     +   D++++
Sbjct: 377 LAALRPEI------AVQTATMAEAVRQIAAQVRPGDLVLL 410


>gi|104783452|ref|YP_609950.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas entomophila
           L48]
 gi|122401968|sp|Q1I5B9|MURC_PSEE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|95112439|emb|CAK17166.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas entomophila L48]
          Length = 482

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 141/440 (32%), Gaps = 61/440 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IFV        GH     A +  A+ +VVSSA +  +          I VV    + L+ 
Sbjct: 64  IFV--------GHR-AENAAS--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAE 111

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIG---PTSTISSFAQDN 160
                +G      +AV GT GK++  S +  +    G   +F IG     +  ++    +
Sbjct: 112 LMRYRHG------VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTS 165

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           R                             S     H    ++ +    TN+  DH+  +
Sbjct: 166 RYLIAEADE---------------------SDASFLH----LQPMVAVVTNIDADHMATY 200

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +            F   LP    A++  DD   +E++ +             +     + 
Sbjct: 201 EGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVREILPQVKRPTV-TYGFSEEADIRAIN 259

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                       +  + +  +    +PG   V NAL    +    GI    +++ L    
Sbjct: 260 VRQQGMQTHFTVLRRDCEPLEVSVNMPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQ 319

Query: 341 VVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            V  RF+  G          +  DY H    +  ++K +R     R +V+        + 
Sbjct: 320 GVGRRFQVYGELPVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRT 379

Query: 398 KR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEA 448
           +       ++  D A++ ++ +  P  E+P       ++   I   G    I      E 
Sbjct: 380 RDLYDDFVQVLGD-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAEL 438

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
                 +L   D+L+  G G
Sbjct: 439 APLVKPLLRAGDILICQGAG 458


>gi|291549817|emb|CBL26079.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus torques L2-14]
          Length = 458

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 117/415 (28%), Gaps = 43/415 (10%)

Query: 64  IAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAV 120
           I+ G + +V ++A +  +      +    P+L    TR + L            +  +AV
Sbjct: 66  ISDGIDCVVYTAAINKANPELMEAVARKIPML----TRAELLGQLMKNY-----KTPIAV 116

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           +GT GK++  S +  I       +      S                       +   + 
Sbjct: 117 SGTHGKTTTTSMISHILLA----ADLDPTISVGGILKAIGGNIRVGKSETFITEACEYTN 172

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              H   + S                    N+  DH+D+ +  +   ++    F  LLP 
Sbjct: 173 SFLHFYPKIS-----------------VILNIEEDHLDFFKDLEDIRHS-FHQFAALLPS 214

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   II  D    +E+            S                       I       
Sbjct: 215 DGTLIINGDIDNYQEIYDSLDCNVITYGSSDMLDYSASNITYDEKGLVAFDLIKNGKVVD 274

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                + G+  V NAL +      + I    + + +        RFE+ G    G  +  
Sbjct: 275 HIQLSVTGDHNVSNALASIATAELLQIPMETIKKGILSFSGTDRRFEYKG-TFNGVTVVD 333

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           DYAH    +   LK  +     ++  VF      R +       + AL   D  ++ D  
Sbjct: 334 DYAHHPTEIAATLKAAQHYPHNQVWCVFQPHTYTRTKAFFHEFAE-ALSHTDHLVLADIY 392

Query: 420 PRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              E          +  E            +  E      E     D+L+  G G
Sbjct: 393 AARETDTLGVSSADLAEEARKLGTDAHYLPSFEEIEAFLKENCKSGDLLITMGAG 447


>gi|270295451|ref|ZP_06201652.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
 gi|270274698|gb|EFA20559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
          Length = 444

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 118/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTN---AKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +++   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----ATEQHDYYVIELSSFQLD--NMYNFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD     + +     G R     +           
Sbjct: 190 MQKYVDAKFRITQNQTSEDAFIFWNDDPI---IKRELDKHGLRAHLYPFAAVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI    + + L     V 
Sbjct: 247 VEDGEVEINEPIAFNMEQEELALHGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   NS    L++     +G+ +++ G G D+      I  
Sbjct: 307 HRLEKVATVRGVSFINDSKATNVNSCWYALQS----MTGKTVLILG-GKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E        +  G+P    +    +A+  A ++  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHAFFDRL--GLPVADVQTGMQDAVEAAFKLAKKGETVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|225870026|ref|YP_002745973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
 gi|225699430|emb|CAW92917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
          Length = 457

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 139/417 (33%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR------KFLS-----LFAS 107
             QA+  +G   I  S    L D         P +  DN        K +S       A 
Sbjct: 52  AAQALLEEGIRVICGSHPLELLDEDFYCMVKNPGIRYDNPMVVRALDKAISILTEVELAY 111

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +      S+   G     +S            
Sbjct: 112 LVSEAP---IIGITGSNGKTTTTTMIADVLNAGNHSALLAGNIGFPASEV---------- 158

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                     ++     + +E SS  L     +  +      TNL   H+DYH + + Y 
Sbjct: 159 --------AQAATAKDILVMELSSFQLL--GTEQFQPHIAVITNLVPTHLDYHGSFEDYI 208

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK R+   +  K+   +  AD    K + ++   +     +                  
Sbjct: 209 AAKRRIQHRMTDKDYLVL-NADQELVKSLAQKTKASPVFFSTKEKVDGAYLADGYLYFKE 267

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++ ++ +           +PG   + NAL    +    GI + ++   L     V  R +
Sbjct: 268 ERLMSAA--------ELGVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVKHRLQ 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VGT ++        +     +    K +    + ++I++   G DR      ++  +  
Sbjct: 320 LVGTLNQVTFYNDSKSTN---ILACQKALSGFDNSKVILI-AGGLDRGNEFDELVPDLVG 375

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + ++       E  E+++         +++  +   A + A E     D++++
Sbjct: 376 -LKKMILL------GESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKAGDIILL 425


>gi|329928513|ref|ZP_08282381.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
 gi|328937772|gb|EGG34180.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
          Length = 458

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 142/417 (34%), Gaps = 51/417 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA+ +V S+A S  +       + N P+L          + A  L  +     +AV G 
Sbjct: 62  QGADLVVYSTALSKDNVERVEAEKLNIPVLH------RAQMLARLLNER---KGVAVAGA 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ +S +  + +  G+                   +     + +         + V 
Sbjct: 113 HGKTTTSSMIALVMEECGVD---------------PTFIIGGEIMNVGTNAKAGEGEHVV 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             + E+    L  H   G+        N+  DH++ ++       A    F   +  +  
Sbjct: 158 AEADESDGSFLQYHPWLGV------VLNIEADHLENYEGDFNRLKAAYVQFLSQIKADGT 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD   + ++            +    ++     V    +     +    +     
Sbjct: 212 AVVCADDNNIQAILPDLKC-NVTTYGIHADAEYTATNLVLGDRHVSFTMLHNGMELGTVE 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  + G  +  DYA
Sbjct: 271 LSVPGKHNVYNAMATVICCLKSGISFEAIVEAIVKFNGAKRRFQVLG-EAEGILVIDDYA 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPR 421
           H    +E  +   +  T  RII VF      R         +   + AD  I+TD  +P 
Sbjct: 330 HHPTEIEATISAAKA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFGE-ADEVIITDIYSPA 387

Query: 422 SED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E            E I      G      K +    +      + + D+++  G G
Sbjct: 388 GEKQIEGISSGKLVELIVQNSNAGARYLPTKEDV---LNDLKGRVKEGDLVLTMGAG 441


>gi|261867481|ref|YP_003255403.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412813|gb|ACX82184.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 476

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 137/434 (31%), Gaps = 52/434 (11%)

Query: 51  GNKEDGHLFIPQAIAQ--GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G K     FI        GA  +V+SSA      +  A   +  P++      + L+   
Sbjct: 63  GAKV----FIGHQAENIVGASVVVISSAIHGDNPEVMAAKEARIPVIQRA---QMLAELM 115

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
              +G      +AV GT GK++  + V  I   +GL    +     + S   +  L    
Sbjct: 116 RFRHG------IAVAGTHGKTTTTAMVSMIYAEAGLDPTFV-NGGLVKSAGTNAHLG--- 165

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                             ++    S     H    ++ +    TN+  DH+D +      
Sbjct: 166 -------------CSRYLIAEADESDASFLH----LQPMISIVTNIEPDHMDTYHGDFDE 208

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                  F   LP    A++ ADD    E++                   I   +     
Sbjct: 209 MKQTYVNFLHNLPFYGLAVLCADDEVLMELVPLVGRQVITYGFSENADYRIEDYQQTGFQ 268

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 I   G+  D L  +PG     NA  A  +    GI +  +L  L        RF
Sbjct: 269 GHYT-VICPNGERIDVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADFQGAGRRF 327

Query: 347 EFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PI 401
           + +G   R      +  DY H    + + ++  R     + IV+        + +     
Sbjct: 328 DQLGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDD 387

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIE 454
             ++     D  I+ D  P  E P      + +   I + G    I   +  +      +
Sbjct: 388 FVQVLSQ-VDALIMLDVYPAGEAPIVGADSKALCRSIRNLGKVDPILVSDTEQLGEVLDQ 446

Query: 455 MLNKQDVLVVAGKG 468
           ++   D+++  G G
Sbjct: 447 IIQDGDLILAQGAG 460


>gi|223938694|ref|ZP_03630584.1| UDP-N-acetylmuramate [bacterium Ellin514]
 gi|223892682|gb|EEF59153.1| UDP-N-acetylmuramate [bacterium Ellin514]
          Length = 443

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 21/268 (7%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              NL  DH D  +       A  + F  L+P+    I   DD     ++   H    R 
Sbjct: 163 IINNLEFDHADIFENLGTIQTA-FKRFINLVPRNGQLIANGDDPNLAPLLNVTHCPVKRF 221

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                         +       +  I      F F   L GE  V NAL         G+
Sbjct: 222 GFGEENAW--RAMNLNLAPTVSEFEIP----SFKFRIGLLGELNVRNALAVVACAKHCGL 275

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIV 386
            +  +    +    +  R E  G +  G  +  D+ H   ++   LK +R      +I  
Sbjct: 276 KNHEIQSAFDTFKGIKRRMEVRGVSG-GVTVVDDFGHHPTAIRETLKALRIKFKGQKIWA 334

Query: 387 VFGCGGDRDQGKRPIM-GKIALDLADI-AIVTDDNPRSE--------DPEKIRAEIIHGI 436
           +F    +    +R +   ++A   AD  A+V     R E        DPE++  EI    
Sbjct: 335 IFEPRTN--TTRRNVFQTELADSFADADAVVVSQIARLELLKPEERLDPERLMQEIKSKG 392

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +    +    +     +V+ V
Sbjct: 393 KTAEYLLDADAIVEHVCKHAQGGEVICV 420


>gi|297623693|ref|YP_003705127.1| FolC bifunctional protein [Truepera radiovictrix DSM 17093]
 gi|297164873|gb|ADI14584.1| FolC bifunctional protein [Truepera radiovictrix DSM 17093]
          Length = 433

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 7/127 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E      RG  + +D AH   +   +   +  +     ++VFG   D+D      
Sbjct: 288 WPGRLE--PVPYRGRTVLLDGAHNPAAAAALAATLERLGVAPALLVFGTSADKDA---RE 342

Query: 402 MGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           M +         I T    +PRS  PE + A                 A+  A+E     
Sbjct: 343 MVRALAGSVRATIATRARLSPRSSPPETLAALWRDAARPAQVAPTPEAALALALESSQPG 402

Query: 460 DVLVVAG 466
           + +VVAG
Sbjct: 403 ETVVVAG 409


>gi|315221960|ref|ZP_07863871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
 gi|315188926|gb|EFU22630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
          Length = 450

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 127/388 (32%), Gaps = 50/388 (12%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           Y     +  +    P++    T   L+   S         I+ +TG++GK++  + + ++
Sbjct: 84  YDNPMVARALEKKIPVI----TEVELAYLIS------DAPIIGITGSNGKTTTTTMIAEV 133

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
               G +    G     +S                      ++     + +E SS  L  
Sbjct: 134 LTAGGQNGLLSGNIGFPASQV------------------ATTATQNDTLVMELSSFQL-- 173

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             ++         TNL   HIDYH + + Y  AK  + + +   +   + +      +  
Sbjct: 174 MGIETFHPEIAVITNLMPTHIDYHGSFENYVAAKWNIQKNMSKSDFLILNFNQTLAKELA 233

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K          +    G         A      +T   E         +PG   V NAL
Sbjct: 234 AKTQATVVPFSTTEKVDG---------AYLEGNMLTFRGEPVMAADELGVPGSHNVENAL 284

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               +    GI++ ++ E L     V  R ++VG  +         +     +    K +
Sbjct: 285 ATIAVAKLRGIENQVIKETLAGFGGVKHRLQYVGEINHVKFYNDSKSTN---ILATQKAL 341

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
               + ++I++   G DR      ++  I   +  + I+       E   +++       
Sbjct: 342 SGFDNSKVILI-AGGLDRGNEFDELVPDI-QGVKKMVIL------GESAARVKRAADKAG 393

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +++  +  +A + A       D++++
Sbjct: 394 VSYMDAADVKDATQKAFAEAQAGDIVLL 421


>gi|309799972|ref|ZP_07694172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
 gi|308116371|gb|EFO53847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
          Length = 450

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 131/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALEKGIPVL----TEVELAYLIS------DAPIVGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G +    G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQNGLLSGNIGYPASQVAQ---TATDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + +AY  AK  +   +   +   + +     +KE
Sbjct: 174 -MGIQEFHPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQSNMTAADYLVLNFNQ-ELAKE 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  + +       ++           +             E         +PG   V NA
Sbjct: 232 LATKTNATVVPFSTLEKVDGAYLEDGLLY--------FRGEKVMAADEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+ ++ E L     V  R +FV   +         +     +    K 
Sbjct: 284 LATIAVAKLRGVDNEIIKETLSAFGGVKHRLQFVDQINGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVDATDIADATRKAYELAEEGDVVLL 421


>gi|163815474|ref|ZP_02206847.1| hypothetical protein COPEUT_01639 [Coprococcus eutactus ATCC 27759]
 gi|158449111|gb|EDP26106.1| hypothetical protein COPEUT_01639 [Coprococcus eutactus ATCC 27759]
          Length = 448

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 99/306 (32%), Gaps = 12/306 (3%)

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T      A A  Y   + V  + +E    GL          +     ++  DH  +    
Sbjct: 118 TSFETETAIAFCYFMDKNVDILLLETGMGGLLDATNVCKSPLCTIIASISMDHTQFLGD- 176

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                   +++ + L      +       ++++M +         + G+           
Sbjct: 177 -----TLQKIYSQKLGIMKKDVPCVAYPVNEDLMPQWIEKCDENATTGFSVMVNPSDIGI 231

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   +   +G  +D   P   +       V     +         +   + L    
Sbjct: 232 LHSGLDGSSYIYKGNTYDLAVPGIYQIYNSVVAVETAYMLQKEGYDLKNVNISDGLAATR 291

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            +            +YVD AH       + KNI T   GR  +++ CG  RD+  R  M 
Sbjct: 292 WK-GRFQKLMDVPPVYVDGAHNPGGWRALRKNIDTYFPGR-DLIYICGVFRDKDYR-QML 348

Query: 404 KIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QD- 460
           +I +  A   I V  DNPR+    ++       I     + +  +A+  A+ + ++ +D 
Sbjct: 349 EIMMPGAGSFIAVQPDNPRALSNRELGELAKMYIDSVYVQDDVDDAVEQALRISSEVEDP 408

Query: 461 VLVVAG 466
           V+++ G
Sbjct: 409 VVIIFG 414


>gi|224532736|ref|ZP_03673353.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           burgdorferi WI91-23]
 gi|224512354|gb|EEF82738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           burgdorferi WI91-23]
          Length = 451

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 121/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYYKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNDNLIGSFSDSRAVFIIPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV    +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILNNFKGIEHRLEFVK-LVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  EA+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIINILEKSSIQYFLFDSLREAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|150014970|ref|YP_001307224.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189028985|sp|A6LPI8|MURC_CLOB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149901435|gb|ABR32268.1| UDP-N-acetylmuramate--alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 459

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 134/452 (29%), Gaps = 59/452 (13%)

Query: 51  GNKEDGHLFIPQAI-----AQGAEAIVVSS-------------AYSLQDFSATIRSNTPI 92
           G    G  F   AI     + GAE  +                A    D    + +    
Sbjct: 34  GYSVSGSDFKDSAIIDKLRSSGAEIYIGHRRENINNVDLVVYTAAIPSDNPELLEAKEKN 93

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + + +  +FL            +  +A++GT GK++  S +  I     L    +     
Sbjct: 94  IALMDRAEFLGQIMKGH-----KYSVAISGTHGKTTCTSMLSHITLADNLDPTIL-VGGE 147

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + +   + R+               S                            G   N+
Sbjct: 148 LDAIGGNFRIGNSEYFLTEACEYKRSFLKFP--------------------PYVGIILNI 187

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+DY++      +     F  L+P++   + YADD    E++   +           
Sbjct: 188 DSDHLDYYKDIDEIADT-FLQFSRLIPEDGYLVGYADDQRVNEILSETNCNTLSYGFSDN 246

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                                      F+    +PG+  + NAL +  + +   I +  +
Sbjct: 247 ANLTAKNIHFNTNGCATFDVYKDGNNLFNITLNVPGKHNILNALASICVSLIFNISNDCI 306

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CG 391
           +E L        RFE+ G    G  +  DYAH    ++  L   + +   +   +F    
Sbjct: 307 IEGLSNCKGAHKRFEYKG-KLNGVTVIDDYAHHPTEIKATLSTAKQMNHNKTYCIFQPHT 365

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNR 445
             R +       +   D AD  I+ D     E        +++   + +     I   + 
Sbjct: 366 YTRTKALFDEFTECFND-ADELILMDIYAAREKNTGLVSSDELGDALRNKGLKCINVHSH 424

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGH-----ETV 472
            EA+      L   D+L+  G G      E  
Sbjct: 425 DEALNYVKSKLVSGDLLLTVGAGDVVIVGEKY 456


>gi|291298684|ref|YP_003509962.1| FolC bifunctional protein [Stackebrandtia nassauensis DSM 44728]
 gi|290567904|gb|ADD40869.1| FolC bifunctional protein [Stackebrandtia nassauensis DSM 44728]
          Length = 448

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 16/134 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T      + +D AH    +   +  +    +  R+IVV G  GD++      
Sbjct: 306 PGRLERVRTAPV---VLLDGAHNPAGMAATVAAVEEEFSLRRLIVVLGVFGDKNA---VE 359

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNK 458
           M ++   + D  +VT   + R++    +  E                 +AI +A+ +  +
Sbjct: 360 MLRLLQPVCDHLVVTQSTSERAKPVAALAREAAEVFDDEQITVMPYLPDAIESAVTLAEE 419

Query: 459 QDV------LVVAG 466
            +       +++ G
Sbjct: 420 GEAAYGGAGVLITG 433


>gi|42783594|ref|NP_980841.1| folylpolyglutamate synthase [Bacillus cereus ATCC 10987]
 gi|42739523|gb|AAS43449.1| folylpolyglutamate synthase [Bacillus cereus ATCC 10987]
          Length = 433

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 115/387 (29%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLENAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V  +G     +H +      +          +D         + +     + A + +   
Sbjct: 221 VYEMGNHFTSLHKQSSEDGEHFDFTCPFASFEDVRISMKGSHQVRNAALALMAVMYVKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLESIADEIIFTT----FAFDRAISADKLASYAKEESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EML + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMLGENDVFIITG 417


>gi|15604117|ref|NP_220632.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia prowazekii str.
           Madrid E]
 gi|6225734|sp|Q9ZDS8|MURC_RICPR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3860809|emb|CAA14709.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE (murC) [Rickettsia prowazekii]
 gi|292571843|gb|ADE29758.1| UDP-N-acetylmuramate--alanineligase [Rickettsia prowazekii Rp22]
          Length = 495

 Score = 58.8 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/436 (16%), Positives = 140/436 (32%), Gaps = 60/436 (13%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           F+ QA    +    +V+SSA +  +      +    PI+        L            
Sbjct: 62  FLGQAKQNIKNVSYVVISSAINQNNPEIKEALERKIPIIRRAEMLAELMRL--------- 112

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +AV+G+ GK++  S +  + + +GL    I     I++ + +  L + + +      
Sbjct: 113 KCSVAVSGSHGKTTTTSLIACLFEAAGLCPTVI-NGGIINNKSTNAYLGSSNYLIAEADE 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  +                       I       TN+  +H+DY+Q  +    A  R F
Sbjct: 172 SDATFIH--------------------IPSTIAIITNIDPEHLDYYQDFEILIGA-FRSF 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A+   D    ++++            +  +   I    +          + 
Sbjct: 211 ITNLPFYGFAVCCIDHKIVRKLVDDITERKIITYGIDSEDAHIIAFNINTDIASSTFDVK 270

Query: 295 VEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   +            P PG   + N+L A  + I +      +         V  RF 
Sbjct: 271 ISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFT 330

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGK---RPI 401
            V        I  DYAH    ++  L   + I    +G++I +F       + K      
Sbjct: 331 KVA-EYNKAVIIDDYAHHPEEIKATLATAKNIANQQNGKVIAIF-QPHRYSRIKYLFDDF 388

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEII--HGIPGFIEKGNRIEAIRTAI 453
           M   A   ADI  +T+     E P      + +  ++                + +   I
Sbjct: 389 MLCFAD--ADILYITNIYAAGETPIEGITGQSLVDKMTQNKHHDKANFLAELDDVVSIII 446

Query: 454 EMLNKQDVLVVAGKGH 469
           +     D++++ G G+
Sbjct: 447 DNAASGDMIIMMGAGN 462


>gi|329116440|ref|ZP_08245157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
 gi|326906845|gb|EGE53759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
          Length = 452

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 134/427 (31%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--TRKFLS--- 103
            DG  F         + +G + I  S    L D    +    P +   N   +K L    
Sbjct: 38  NDGKAFEENPSAQVLLEEGIKVICGSHPLELLDEDFALMVKNPGIPYSNEMVKKALDKGI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I A+TG++GK++  + +  +   +G S+   G         
Sbjct: 98  QVLTEVELAYLISEAP---IFAITGSNGKTTTTTMIADVLNHAGQSALLSGNIGFP---- 150

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                       +A             + +E SS  L    +D  +      TNL   HI
Sbjct: 151 ---------ASEVAVDAKENDR-----LIMELSSFQL--MGVDQFRPHIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y NA     +  +  +   I+  D   S ++  +         S        
Sbjct: 195 DYHGSFEEYVNA-KWNIQNNMSDKDFLILNGDQEISYDLANKTKATILYFSSQKEVDGAY 253

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            L        +  +              +PG   V NAL    +     +D+  + E L 
Sbjct: 254 CLDGKLYFEGEYIMD--------ADQIGVPGLHNVENALATIAVAKLANVDNDSIKETLA 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R ++VG  ++        +    + +  L +         +++   G DR   
Sbjct: 306 SFGGVKHRLQYVGQVNQIKFYNDSKSTNILACQKALSSF----DNSNLILIAGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I        I+       +  +K++         +++  +  EA   A +   
Sbjct: 362 FDDLVPDIIG--LKKLIL-----LGQSADKMKKAAEKAGVSYLDAKDVAEATAIAFKEAK 414

Query: 458 KQDVLVV 464
           + DV+++
Sbjct: 415 QGDVVLL 421


>gi|254470266|ref|ZP_05083670.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
 gi|211960577|gb|EEA95773.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
          Length = 473

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 85/282 (30%), Gaps = 17/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++        A  +  E +       +          V +   
Sbjct: 173 LPADIAVVTNIDPEHLDHYGDFDGVRAAFAQFVENVPFYGFAVMCLDHPEVQSLVGQIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPGEFQVYNAL 316
                  +                 +   V+I     D          P+PG   V NA 
Sbjct: 233 RRIITYGTNPQADVRFTDVSTKGGKSIFSVSIHDRRGDKVTELQDLVLPMPGLHNVSNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  L  ++GI    + + L     V  RF   G +  G   + DYAH    ++ +L   
Sbjct: 293 AAIALAHSLGISGENIRKGLASFGGVKRRFTHTG-SWNGVEFFDDYAHHPVEIKSVLHAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA--EI 432
           R    G++I V      R    + +          AD  ++       E P +     ++
Sbjct: 352 REAAEGKVIAV--MQPHRFTRLQSLFEDFCACFNDADKVVIAPVFAAGEQPIEGADQPDL 409

Query: 433 IHGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           I G+               E      E+    D+++  G G+
Sbjct: 410 ISGLRAGGHRSVHSIAGPDELAGKIAELAEPGDLVICLGAGN 451


>gi|148284352|ref|YP_001248442.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Boryong]
 gi|146739791|emb|CAM79666.1| UDP-N-acetylmuramate--alanine ligase [Orientia tsutsugamushi str.
           Boryong]
          Length = 502

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 123/337 (36%), Gaps = 44/337 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V+SSA    +    A I +  PI+   +  + L+           +  +A++G+
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAILAKIPII---SRAEMLAELMR------SKVAIAISGS 133

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I +  GL    I     +++ A +  L           ++       T
Sbjct: 134 HGKTTTTALIACIFEACGLHPTVI-TGGIMNNRATNAYLGDGD-----YFIAEADESDAT 187

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+                   TN+  +H+D+++      +A  R F   LP +  
Sbjct: 188 FIKIPAT---------------IAVITNIDVEHLDFYKNFDNLISA-FRKFIINLPYDGF 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+   DD   + ++ +  +       +  +   I    +   +      + ++  +F   
Sbjct: 232 AVACIDDITVQNLIAKITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNE 291

Query: 304 F-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P  G+  + N+L A  + + + +D  ++ +  +    +  RF  +G      
Sbjct: 292 VIITQVTLPALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNFKGIARRFTKIG-EYNNI 350

Query: 357 RIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGC 390
            +  DYAH    +   +   R I     GR+I VF  
Sbjct: 351 TVIDDYAHHPAEIIATIDTARCIADKQQGRVIAVFQP 387


>gi|126726622|ref|ZP_01742462.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703951|gb|EBA03044.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
          Length = 463

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 136/414 (32%), Gaps = 47/414 (11%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE +V+SSA      +         P++        L            ++ +A+ GT G
Sbjct: 71  AEVVVISSAIKPGNPELDTARARGLPVVRRAEMLAELMRL---------KSNIAIAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V ++    G+    I     I ++  + R+                      +
Sbjct: 122 KTTTTTLVAELLVGGGMDPTVI-NGGIIHAYGSNARMGQGE-----------------WM 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++  +  A        F   +P    A+
Sbjct: 164 VVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGSFDALRQGFA-DFVGNIPFYGLAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN--KQQVTISVEGKDFDFL 303
              D    + ++ R  +       V  Q     L                +      D  
Sbjct: 220 CCTDHPEVQALVGRIRDRRITTFGVNAQADVRALNLRYENGRALFDIQLKAEGQMIEDCS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PGE  V NAL A  +   +G+  A +   LE    V  RF  VG    G  +  DYA
Sbjct: 280 LPMPGEHNVTNALAAVAVARHLGMKKAEIRTALENFGGVNRRFTRVG-EVGGAIVIDDYA 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    +   L+  R  T+GR+I V      R      +          AD+  ++D    
Sbjct: 339 HHPVEIAAALRAARQSTTGRVIAV--HQPHRFSRLHDLFDDFCACFNDADVVAISDVYAA 396

Query: 422 SEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
            E P      + + A ++             EA+   I+      D+++  G G
Sbjct: 397 GEAPIEGANRDDLVAGLVAHGHRHALALQNEEALLDLIKTEAKPGDMVICLGAG 450


>gi|116492948|ref|YP_804683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265588|sp|Q03EY1|MURD_PEDPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116103098|gb|ABJ68241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 455

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 139/398 (34%), Gaps = 45/398 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLSL--FASRLYGKHPENILAVTGTSGK 126
           I+  +   L   +  I    P+LV    R  K +S    A  +       ++ VTG++GK
Sbjct: 68  ILSQNKIELIVKNPGIPYTNPVLVDAQARGIKIVSEPELAYWVMD---SELIGVTGSNGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V + +Q +   +   ++  G                P+     KA +           
Sbjct: 125 TTVTTLIQLMLDDNKKHAYVAGNIGV------------PATTVAQKATAEDKIVMELSSF 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           + A    L  H             N+   H+D+H+T++ Y N KM + +     +   I 
Sbjct: 173 MLAGIDRLHPH--------IAVLNNIFASHLDWHKTRENYVNDKMNITKNQTKDDFLVIN 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           + +  + + + KR           G       L K  A   + ++    E         +
Sbjct: 225 WDNTEWQE-LAKRTQAKVVPFSRQG-------LTKSGAYEIEGKLYFKDELIMEADEIGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  V NAL A  +     + +A + + L     V  R ++V   +         A   
Sbjct: 277 PGEQNVENALAAIAVAKIEKVSTAHIKQVLTTFGGVKHRIQYVENLNGRQFYNDSKAT-- 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +E     +R+    + +++   G DR      ++  +        IV  +   +E  +
Sbjct: 335 -DIEATQVALRSF--KKPVILIAGGLDRHDDLDRLIPDL-EPNVKEVIVNGET--AEKFK 388

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI      GI    +     E++  A +   + D++++
Sbjct: 389 KIAQ--KAGISVIKDSSRVSESVEIAYQDSKEGDIILL 424


>gi|225571175|ref|ZP_03780173.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
 gi|225160006|gb|EEG72625.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
          Length = 459

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 123/406 (30%), Gaps = 42/406 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +       ++F A  +   P+L   +  + L    +          +AV+GT GK++ 
Sbjct: 77  AAIHE---DNEEFKAAAQKGIPML---SRAELLGQLMTNYD-----VPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  I   +G     I     + +   + ++ T     L    +   +    H   + 
Sbjct: 126 TSMLSHIL-LAGDLDPTISVGGILKAIGGNIKVGTS---GLFVTEACEYTNSFLHFFPKI 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S                    N+  DH+D+ +      N+  R F  LLP +   +I  +
Sbjct: 182 S-----------------VILNIDEDHLDFFKDLDDIRNS-FRRFAALLPADGTLVINGE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               +E+            +                 +     +            + G+
Sbjct: 224 IENLEEITAGLSCRVVTYGTEHSMNYSASNISHNEKGDASFDLVKNGEFMERVQLSVNGD 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A  +   + +  A +   L++      RFE       G  +  DYAH    +
Sbjct: 284 HNVSNALAAVAVADILSVPLADICRGLKEFAGTNRRFE-HKGEKNGFTVIDDYAHHPTEI 342

Query: 370 EMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE----- 423
           +  L          +  VF      R +         AL LAD  I+ D     E     
Sbjct: 343 KASLTAAAHYPHKELWCVFQPHTYTRTKALFHEFVD-ALALADHVILADIYAARETDTLG 401

Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                I   +              E     ++M +K D+L+  G G
Sbjct: 402 ISSRDIADALKEKECDAYYFSTFKEIEDFCLDMCHKGDLLITMGAG 447


>gi|156973222|ref|YP_001444129.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166224748|sp|A7MXR2|MURC_VIBHB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156524816|gb|ABU69902.1| hypothetical protein VIBHAR_00903 [Vibrio harveyi ATCC BAA-1116]
          Length = 485

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 146/472 (30%), Gaps = 67/472 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEA 70
           L     I      E  + E     R +  G  +F+        GH    QA  + + A  
Sbjct: 43  LNEGYQITGSDLSENPVTE-----RLVSKGATVFI--------GH----QASNVEK-ASV 84

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + ++          I +V   R+   L+      +G      +AV GT GK++
Sbjct: 85  VVVSTAINEENPEVMAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V QI   +GL    +     + S   + RL +   +      S  S          
Sbjct: 136 TTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------- 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+  DH+D +             F   LP    AI+  
Sbjct: 188 -------------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCI 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   +E++ R                 I          K    +     + D    +PG
Sbjct: 235 DDPVIRELIPRISRQVITYGFSEDADVRIEDYHQEGQQGKFT-VVREGRANLDITLNIPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHT 365
                NA  A  +     I    +L+ +        RF+ +G    G     +  DY H 
Sbjct: 294 RHNALNASAAIAVATEDDISDEAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHH 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE 423
              +++ +   R+    + +V+        + +        +     D+ I+ D     E
Sbjct: 354 PTEVDVTIHAARSGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGE 412

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P        +   I   G    I      +       ++   D+++  G G
Sbjct: 413 KPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGAG 464


>gi|295101921|emb|CBK99466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii L2-6]
          Length = 466

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 107/361 (29%), Gaps = 40/361 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I+AVTG+ GK++  + + +  + +G      G                    
Sbjct: 113 FFQFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRRVHLGGNIGA---------------- 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
             A               VE SS  L               TN+  +H+D+H+  Q Y +
Sbjct: 157 --ALLPMLPEVSPDDVAVVELSSFQLIS---MHQSPNIAVVTNVTPNHLDHHKDMQEYID 211

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A  R       +   A++  ++  S+ + K           +        L++   +   
Sbjct: 212 A-KRNILLYQKQPCRAVLGYENEISRSMQKDCKGKQVWFTRLHETDNGAFLREDGMLCMA 270

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +   ++      D              L+AA   +   +    +         V  R E 
Sbjct: 271 ENGVVTPFLAQKDVKLRGLHNI---ENLLAAAAAVWGEVPVEAIQLVGSSFTGVEHRIEP 327

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V               +       L++         +++   G D+     P+  +I   
Sbjct: 328 VRVLDGVTYYNDSIGTSPTRTIAGLRSFDQ-----KVILIAGGYDKHIPYEPLAPEITAH 382

Query: 409 LADIAIVTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + ++ ++    PR      EDP    AE+           N   A+  A       D+++
Sbjct: 383 VKNLVLMGATGPRIEKAVREDPNFHEAEL-----PIQHADNMQHAVELARACAKPGDIII 437

Query: 464 V 464
           +
Sbjct: 438 L 438


>gi|149002384|ref|ZP_01827326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182683613|ref|YP_001835360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
 gi|237650293|ref|ZP_04524545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821989|ref|ZP_04597834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|226722948|sp|B2IN76|MURD_STRPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147759699|gb|EDK66690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182628947|gb|ACB89895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
          Length = 450

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 120/389 (30%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TASDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 TSKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +     +D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|119944901|ref|YP_942581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
 gi|119863505|gb|ABM02982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
          Length = 445

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 121/395 (30%), Gaps = 46/395 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ S   +L   +          ++ +   F    +   Y      ++ ++G++GKS+V
Sbjct: 65  LIIASPGIALATPALQFALANGCEIIGDIELFARELSKPAYAH--AKLVTISGSNGKSTV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + ++   + +     G                   + L        S  +    +E 
Sbjct: 123 TSLLGEMAVAAKIKVAVGGNIGIP-------------ALDL-------LSPEIDLYILEL 162

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +     +  N+  DH+D + +   Y  AK       L ++    +Y  
Sbjct: 163 SSFQLET--TFSLNADIATLLNISEDHMDRYDSYAQYTAAK-----HRLYQQCKMALYNR 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D         + N           G      K   +       ++ +             
Sbjct: 216 DDKLTYPKNHSLNKTSFGFDKLAYGLVTDADKQIFLAKNGSPILAAKQLKLSGKHNW--- 272

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  L  A+G+    +   L+    +P R EFV   +    I    A    + 
Sbjct: 273 ---MNTLAAFALGEAVGLSEIGMFTALQAYSGLPHRCEFVAEINNVRWINDSKATNIGAA 329

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  L  +     G + V+ G  G     K     ++AL L    I         D +KI 
Sbjct: 330 QAALLGLSETIPGNVHVILGGDG-----KGADFSELALVL--KEIQGMIVCFGVDGKKIA 382

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A+        +   N  +A+          D++++
Sbjct: 383 AQ----HKRALLVENLEQAVENIFTTAQAGDLVIL 413


>gi|255015709|ref|ZP_05287835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           2_1_7]
          Length = 441

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 107/361 (29%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G+     G               
Sbjct: 91  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGN----------- 136

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 137 ---SLALQV-----AEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDHLDRYNYE 186

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   I + DD      + + H                 +K   
Sbjct: 187 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHENG--VKGYT 244

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +     T +        L  L G   +YN+L +      + I    +   L     V 
Sbjct: 245 ENNQVVIETANGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE 304

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++         VV   GG         + 
Sbjct: 305 HRLEKVLRVRGVDYINDSKATNVNSCWYALQSMT------TPVVLILGGTDKGNDYSEIE 358

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        I         D  K+ A     +    +  +  EA+  A +M +K D ++
Sbjct: 359 ELVNKKVHSLIF-----MGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVL 413

Query: 464 V 464
           +
Sbjct: 414 L 414


>gi|114773356|ref|ZP_01450560.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
 gi|114546290|gb|EAU49201.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
          Length = 470

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 141/420 (33%), Gaps = 51/420 (12%)

Query: 62  QAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           +A+      ++ S+     ++         PI+        L            ++ +A+
Sbjct: 73  EAVE---VVVISSAIKAGNKELDHARALGLPIVRRAEMLAELMRL---------KSNIAI 120

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            GT GK++  + V  +    G+    I     I ++  + R+ T   + +    S     
Sbjct: 121 AGTHGKTTTTTLVATLLDHGGIDPTVI-NGGIIHAYGSNARMGTGDWMVVEADESD---- 175

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                              + +       TN+  +H++++ +     +A    F   +P 
Sbjct: 176 ----------------GTFNKLPATIAVVTNIDPEHMEHYGSFDNLKDA-FYNFVSNIPF 218

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI   D    + ++ R  +          Q      + +          I+++ ++ 
Sbjct: 219 YGLAICNTDHPEVQSLVGRVDDRRIVTYGFNKQADV-RAENLKFKKGCAYFDIALQSENA 277

Query: 301 DFL---FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+PG++ V NAL A  +   +G+D+  +   L +   V  RF  VG    G  
Sbjct: 278 FIKDVMLPMPGDYNVSNALAAVAVSRHLGMDAKQIRNALLEFKGVKRRFTHVG-EINGVT 336

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIV 415
           I  DYAH    +  +L   +  TSG++I V      R      +          AD+  +
Sbjct: 337 IIDDYAHHPVEISAVLSAAKQATSGKVIAV--HQPHRYSRLDNLFEDFCNSFNDADVVGI 394

Query: 416 TDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           TD     E+P K       +      G        +  +  +  +E     D+LV  G G
Sbjct: 395 TDVYSAGEEPIKNRNRDSLVAGLKARGHRNAFAVVDEADLKKFFLENCKNGDLLVCLGAG 454


>gi|152976874|ref|YP_001376391.1| FolC bifunctional protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025626|gb|ABS23396.1| FolC bifunctional protein [Bacillus cytotoxicus NVH 391-98]
          Length = 433

 Score = 58.4 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 112/385 (29%), Gaps = 43/385 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + +               +   + +    P          
Sbjct: 42  KCIHLAGTNGKGSTLTYMRYMLEAETYKVGTFTSPYIETFNERISVNGKPISDQEITDLV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    +     GL   R D   ++  
Sbjct: 102 NIVKPVVEKLDETEFGEATEFEIITVMAMYYFGKVNICDLVLFETGLG-GRFDSTNVVYP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEVMKRAHNAGCR 266
             T +     D+                 ++    P I    D    + + K A+     
Sbjct: 161 VLTIITNIGHDHMHILGNTLAEIAYEKAGIIKSGVPVITGVQDGEALQVIQKVANEKNAS 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  +G Q   +H +      +          KD         + +     + A L +   
Sbjct: 221 LYEIGKQFTVVHQRSNEEGEHFDFSCPFASFKDIQISMKGDHQVRNAALALMAVLYLKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +          GRFE +        + +D AH    +  +++  +   S +
Sbjct: 281 MSFLVEEENIRIGLSETYWIGRFERLRR---NPDVIIDGAHNPEGIASLVQTAKAHYSDK 337

Query: 384 II-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIE 441
            + ++F   GD++      M      +AD  I T  D  R+   +++           +E
Sbjct: 338 NVSILFTALGDKELSH---MVGQLEAVADEMIFTTFDFNRAISAQELANYATKETKKVVE 394

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             N  EAI   +  L + DV ++ G
Sbjct: 395 --NWKEAIDQKLLELQENDVFIITG 417


>gi|221213276|ref|ZP_03586251.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
 gi|221166728|gb|EED99199.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
          Length = 465

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 132/428 (30%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +          + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  ++      R    R         L
Sbjct: 322 TADGGRYTLIDDYGHHPVEMAATIAAARGAFPGRR-LILAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTD------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQD 460
           +  D  ++T+          + + + +   +             ++A+  A+       D
Sbjct: 381 STVDALVLTEVYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGD 440

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 441 VVITMGAG 448


>gi|77460896|ref|YP_350403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf0-1]
 gi|118595675|sp|Q3K742|MURD_PSEPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77384899|gb|ABA76412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf0-1]
          Length = 448

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 116/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I+A++G++ KS+V + V ++   +G      G   T               +
Sbjct: 103 FARNAKAPIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +    AY  
Sbjct: 150 DLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGLPAYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA ++ +M      G    + G          +   + +
Sbjct: 201 AKHRIFRGAKQF----VVNRQDALTRPLMGE----GQPCWTFGLSKPDFKAFGLREENGE 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L     +  R ++
Sbjct: 253 KYLAFEFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLVALRTFAGLEHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V      G      A    +    ++ +     G+  VV   GGD    +   +      
Sbjct: 313 VRDLDGVGYYNDSKATNVGAALAAIEGLGADIDGK--VVLIAGGDGKGAEFKDLRDPVAT 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                I+        D +KI   I   +P  I     ++A+          DV+++
Sbjct: 371 HCRAVIL-----MGRDSDKIGEAIGDAVP-LIRATTLVDAVAQCRAAAQPGDVVLL 420


>gi|317484853|ref|ZP_07943745.1| FolC protein [Bilophila wadsworthia 3_1_6]
 gi|316923899|gb|EFV45093.1| FolC protein [Bilophila wadsworthia 3_1_6]
          Length = 421

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/380 (14%), Positives = 112/380 (29%), Gaps = 19/380 (5%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           N    L L         P   + + GT+GK S ++F+  + +  GL          ++  
Sbjct: 30  NALDALGLL------TPPFVTVQIVGTNGKGSTSTFLSCVARAHGLKVGLYTSPHFVTPR 83

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
            +     T  P      L+    +   +++       L    L            +    
Sbjct: 84  ERIRINGTMLPADRWPVLADRVMEAAPNLTYFEFLTALG---LLAFAEAGVDLVVMEAGL 140

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
             ++    A     +      +  E        D  S +                 +   
Sbjct: 141 GGHYDATTAMPVQAVCFTPIGMDHEKILGPTLTDIASDKSQAMRPGVPAFTAPQEAEALD 200

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             L+       + + T S+           P +       +A    +A       + E  
Sbjct: 201 CLLRTAQEKGAELRETASLPFPQSALGLAGPHQRVNARLAIAVWDWLADQHHWPNMPETA 260

Query: 337 EK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
            K       PGRF+ +   +    + +D AH  + L      +R        V+F C  D
Sbjct: 261 AKGLASAHFPGRFQRIPACNGLPPLILDGAHNPHGLRAFETAVRDADIQPAAVIFSCLAD 320

Query: 394 RDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI--EAIR 450
           +D     P + +IA D         DN R+ + E++   +  G    I +  +    A++
Sbjct: 321 KDISDMLPFIRRIAGDAPLFVPTIQDNERAMNGEELAKLLAEGRGPAITQPTQRLSLALK 380

Query: 451 TAIEMLNKQDV----LVVAG 466
                +  +D     +++ G
Sbjct: 381 ETASFVPAEDADRHPVLLCG 400


>gi|50955151|ref|YP_062439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leifsonia
           xyli subsp. xyli str. CTCB07]
 gi|62900514|sp|Q6AE62|MURD_LEIXX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50951633|gb|AAT89334.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 517

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 137/420 (32%), Gaps = 52/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---LFASRLYGKHPENILAVTGT 123
           G E IVVS  +              I V  +           A    G  P + + VTGT
Sbjct: 85  GPELIVVSPGFHADHPLLLWADQQGIPVWGDIELAWRLRDKTAPPGSGNSPADWICVTGT 144

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++       +    G      G                     +A   +    QG  
Sbjct: 145 NGKTTTVQLTATMLLAGGSRVAPCGNIG------------------VAVLDAIRDPQGFD 186

Query: 184 HVSVEASSHGLDQ-HRLDG--IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            + VE SS+ L   +R  G  +   A +  N+  DH+D+H + +AY  AK +++E     
Sbjct: 187 VLVVELSSYQLHWINRNAGGEVSPYAAACLNIADDHLDWHGSLEAYAAAKAKVYENAQVA 246

Query: 241 ESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-KKVCAIHNKQQVTIS 294
                   A +   +        RA   G  V      G    +      + ++    I 
Sbjct: 247 CVYNRADEATLRMVEETEVVEGARAIGFGLDVPGPSDFGIVDGILCDRAFLDDRLHSAIE 306

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   +      L     V N L A+ L  A G++  +V + L    +   R E V   + 
Sbjct: 307 LTTLEELREAGLAAPHIVANILAASALARAYGVEPWVVRDVLSAFRLDAHRIELVRIEAG 366

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +    A   ++ +  L+   ++    + VV G     D     ++ + A  L    +
Sbjct: 367 VSWVDDSKATNPHAADASLRAYPSV----VWVVGGLFKGVDLDG--LVKRHAARLRGAVL 420

Query: 415 VTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIE-----AIRTAIEMLNKQDVLVVA 465
           +  D         +          G+P      +  E     A+R A  ++   D +++A
Sbjct: 421 IGAD-------RDLLRSAFQRHAPGLPVVEVDADETEHVMPTAVRLAAALVRDGDTVLLA 473


>gi|114045897|ref|YP_736447.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
 gi|123326953|sp|Q0HZR5|MURC_SHESR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113887339|gb|ABI41390.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
          Length = 488

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 79/441 (17%), Positives = 157/441 (35%), Gaps = 56/441 (12%)

Query: 47  VAIVGNKED---GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-- 101
           + ++G K     G   + QA     + +VVS+A + ++          I +V   R+   
Sbjct: 61  LCLLGAKIHIGHGADNVQQA-----DVVVVSTAINPENPEIIAAKELRIPIV---RRAEM 112

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+      +G      +A+ GT GK++  S +  +  ++G     +     ++S   + R
Sbjct: 113 LAELMRYRHG------VAIAGTHGKTTTTSLIASLYGQAGRDPTFV-IGGLLNSAGTNAR 165

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L T   +      S  S                       ++ +    TN+  DH+D + 
Sbjct: 166 LGTSRYLIAEADESDASFLH--------------------LQPMVSVVTNIEADHMDTYG 205

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                  +    F   LP    A++  DDA  +E+M R                      
Sbjct: 206 GDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRHMITYGFSDDADV--QALN 263

Query: 282 VCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                ++ + T+  +GK+  D L  LPG+  V NAL A  +     ID + +++ L +  
Sbjct: 264 FHQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQ 323

Query: 341 VVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRD 395
            +  RF+ +G  +       +  DY H  + +   +K  R     + +V+        R 
Sbjct: 324 GIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRT 383

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEA 448
           +       ++     D  ++ +     E P        +   I + G    I   +  + 
Sbjct: 384 RDLYEDFIEVLSQ-VDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQL 442

Query: 449 IRTAIEMLNKQDVLVVAGKGH 469
                ++L + D+L+  G G+
Sbjct: 443 AEVLPDVLQEGDLLLTQGAGN 463


>gi|256841648|ref|ZP_05547154.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
 gi|256736542|gb|EEU49870.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
          Length = 445

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 107/361 (29%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G+     G               
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGN----------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 141 ---SLALQV-----AEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDHLDRYNYE 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   I + DD      + + H                 +K   
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHENG--VKGYT 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +     T +        L  L G   +YN+L +      + I    +   L     V 
Sbjct: 249 ENNQVVIETANGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++         VV   GG         + 
Sbjct: 309 HRLEKVLRVRGVDYINDSKATNVNSCWYALQSMT------TPVVLILGGTDKGNDYSEIE 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        I         D  K+ A     +    +  +  EA+  A +M +K D ++
Sbjct: 363 ELVNKKVHSLIF-----MGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|167766381|ref|ZP_02438434.1| hypothetical protein CLOSS21_00885 [Clostridium sp. SS2/1]
 gi|167711972|gb|EDS22551.1| hypothetical protein CLOSS21_00885 [Clostridium sp. SS2/1]
 gi|291559219|emb|CBL38019.1| folylpolyglutamate synthase/dihydrofolate synthase
           [butyrate-producing bacterium SSC/2]
          Length = 424

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/408 (14%), Positives = 135/408 (33%), Gaps = 44/408 (10%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +L +DN ++ L    +    +    ++ + GT+GK S  +F+  I + SG  + +    +
Sbjct: 19  VLGLDNIKELLERLGN---PQDQLKVVHIAGTNGKGSTLAFLAGIFRESGYRAGRYVSPA 75

Query: 152 TISSFAQDNRLTTPSPIYLAKAL--------SYLSSQGVTHVSVEASSHGLDQ------- 196
           +     +                          +   G++H ++      L         
Sbjct: 76  SFCYEERFRINEENISKEDLCFYMEKIKKISDEMVRDGMSHPTMFEIETALSFLYFLDKK 135

Query: 197 -----------HRLDGIK----LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                       RLD        IA    ++G DH+ +         A+     +     
Sbjct: 136 VDVVLLETGMGGRLDATNVVKKPIAVIIASIGMDHMQFLGDTIEKIAAEKAGIIK--EGC 193

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
                   ++ ++ + ++A    C+V  V  +G  +  + +       + +     +  +
Sbjct: 194 PVISYNNQESVNEVIKEKAKEMHCKVTFVNSEGIRVLSESLNGESFSYRSSDGRCYEKIE 253

Query: 302 FLFPLPGEFQVYN-ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                  +      AL A          S    E   +  +  GR E +    +   +  
Sbjct: 254 IPLLGRHQINNAALALEALNTIRNYYCISEFQTEDGLRKTIWRGRIEIL---EKDPLVIC 310

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDD 418
           D AH  +  + +L  ++   T+ R+I + G   D+D      M +I   +A     V  D
Sbjct: 311 DGAHNPDGAKSLLNFLQNNFTNRRLIYIMGVLSDKDYE---QMIQILTPMAAKVYTVAPD 367

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           N R+   + +   +        E+    E +    +  +K+DV+++ G
Sbjct: 368 NARALSSKDLAECVRKYHHDVEERQRLKECLEEVKQQADKEDVIIICG 415


>gi|28199734|ref|NP_780048.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa
           Temecula1]
 gi|182682481|ref|YP_001830641.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M23]
 gi|32129758|sp|Q87AG0|MURC_XYLFT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620437|sp|B2I9B2|MURC_XYLF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28057855|gb|AAO29697.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Temecula1]
 gi|182632591|gb|ACB93367.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M23]
 gi|307578762|gb|ADN62731.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 477

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 143/418 (34%), Gaps = 49/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+      +G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRHG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  +    G   +F IG                     L  A +         
Sbjct: 126 KTTTTSLIAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGAGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        RL+ +       TN+  DH++ +    +        F + LP    A
Sbjct: 167 LVVEADESDGSFLRLNPLV---AVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           ++  DD    E++ +A      +         +  + V     +   T+ +         
Sbjct: 224 LLCLDDPEVAELVGKARRH--VMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360
             LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    V   
Sbjct: 282 LALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLI 341

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSSVDALVLSE 400

Query: 418 DNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             P  E      D + +   I   G    +  G     I    ++L + D+L++ G G
Sbjct: 401 VYPAGEVPIPGADAKALARAIRARGRSEPVVVGQVASLIDVLPDVLQEGDLLLMMGAG 458


>gi|329895277|ref|ZP_08270919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
 gi|328922399|gb|EGG29742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
          Length = 452

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 122/356 (34%), Gaps = 45/356 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   ++ +TG++GKS+V + V ++  ++GL +   G  S  +    D+ +      
Sbjct: 109 FMEAAKAPVIGITGSNGKSTVTTLVGEMLAKAGLRAAVGGNLSPAALAILDDDI------ 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L+  R + + L      N+  DHID+H +  AY  
Sbjct: 163 --------------EVYVLEMSSFQLE--RSNALGLDVAVVLNVTADHIDHHGSMAAYHA 206

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK       + +++ A++  DD    + +  +     R  +  ++     L         
Sbjct: 207 AK-----HRIFRKAKAVVVNDDDVLTQPLVDSTVQVTRYGAKAHRDAEFKLLNDALWMGV 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            ++              L G     NALVA  +     + +  +   L     +P R   
Sbjct: 262 SKI-------IDVSEMALRGRHNHLNALVACAIAACFDVAAEAMAATLRTFSGLPHRCRV 314

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T +    I    A    +       I  I     +V+   G  + Q    ++  I   
Sbjct: 315 VQTIAGVTYINDSKATNVGAALA---AIEGIGPNSDLVLLAGGLGKGQDFSALVPAI-NR 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                IV       E   ++ A  +  +   I+  N  +A+  A E+    D +++
Sbjct: 371 YVREVIV-----FGEAAGELAA--LPLLRPAIQVENLQQAVSRAAEIAQPGDTVLL 419


>gi|312795062|ref|YP_004027984.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166837|emb|CBW73840.1| UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 487

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 83/432 (19%), Positives = 135/432 (31%), Gaps = 58/432 (13%)

Query: 56  GHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGK 112
           GH    I      GA+A+V+S+A    +          I +V   R   L+       G 
Sbjct: 80  GHDARHID-----GADAVVISTAVHADNPEVLEARRRHIPIVP--RAVMLAELMRLKQG- 131

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I   
Sbjct: 132 -----IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAE 184

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S  S                       +  +    TN+  DH+D +    A      
Sbjct: 185 ADESDASFLN--------------------LFPVIEVITNIDADHMDTYGHDFARLKQAF 224

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP    A++  DD   +E++    +          +                  
Sbjct: 225 IEFTHRLPFYGIAVLCVDDPNVREILP-FVSKPIIRYGFAQEADVRATHVCARDGRMHFT 283

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               +    D +  LPG   V NAL A  +   + +  A +   L + + V  RF+  G 
Sbjct: 284 VHRADAAPLDIVLNLPGTHNVQNALAAIAIATELEVADADIQSALAEFNGVGRRFQRYGE 343

Query: 352 NSRG----GRIYVDYAHTSNSL-EMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKI 405
                     +  DY H    +   I          R+++VF      R +       K+
Sbjct: 344 VPLTRGGAYLLIDDYGHHPVEMAATIAAARGAFPDRRLVLVFQPHRYTRTRDCFEDFVKV 403

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEML 456
                D  ++T+     E P  I A     +   I    R+E +              M+
Sbjct: 404 LST-VDALVLTEVYAAGEAP--IVAADGRALARAIRVAGRVEPVFVDTLDEIPDALAAMV 460

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 461 ADGDVVMTMGAG 472


>gi|216264830|ref|ZP_03436822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 156a]
 gi|221218094|ref|ZP_03589560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 72a]
 gi|223888943|ref|ZP_03623534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 64b]
 gi|224533660|ref|ZP_03674249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi CA-11.2a]
 gi|225549611|ref|ZP_03770577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 118a]
 gi|215981303|gb|EEC22110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 156a]
 gi|221192042|gb|EEE18263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 72a]
 gi|223885759|gb|EEF56858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 64b]
 gi|224513333|gb|EEF83695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi CA-11.2a]
 gi|225369888|gb|EEG99335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 118a]
          Length = 451

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 122/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNDNLIGSFSNSRAVFIIPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILNNFKSIEHRLEFVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|218282555|ref|ZP_03488805.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
 gi|218216542|gb|EEC90080.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
          Length = 440

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 66/394 (16%), Positives = 126/394 (31%), Gaps = 47/394 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
              Y+    +  I    P +   V+   K  +            +  AVTGT GK++V +
Sbjct: 59  EKKYAFIVKNPGIPYRVPFVHYFVEQNAKIYTEIEVAYRYAKNFDYAAVTGTDGKTTVTT 118

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            + ++  R    S   G   T                      +   +    +V++E S+
Sbjct: 119 LLFEMLNRQK-KSLVAGNIGTPLCEL-----------------ALEYTDTNYNVALELSN 160

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L    ++  +    + TNL  DH+DY  + +AYF +KMR++E            ADD 
Sbjct: 161 FQLL--GIETFRPHVSTVTNLAPDHLDYMDSLEAYFESKMRIYE---------NTNADDY 209

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           + + V         + +        +  K V    + Q                + GEF 
Sbjct: 210 FIRNVDDENVVKYAQNIPCHVIDFSLKRKDVDLYKDDQYAYYKDTQLFKLSDLKIVGEFN 269

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NA++A+ +   +G+    + E + +   V  R E+V T           A  +++   
Sbjct: 270 CGNAMMASCMAYLMGVSLFNIQEVIREFSGVEHRIEYVDTIDNVRFYNDSKATNTHAACA 329

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            L             V    G +D+       K    +    I           +    +
Sbjct: 330 GLSAFEK-------NVILLCGGKDKHISFDDLKQYDAVVKKCI------SFGQTKDKFKD 376

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I       +      +A   A+      D++++ 
Sbjct: 377 I---FSNQVSVETMRDAFEKAVLFAKPGDIVLLC 407


>gi|83748764|ref|ZP_00945779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia
           solanacearum UW551]
 gi|207744403|ref|YP_002260795.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724585|gb|EAP71748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia
           solanacearum UW551]
 gi|206595808|emb|CAQ62735.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum IPO1609]
          Length = 550

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 11/155 (7%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NA+ A  LC AIG+ ++ +L  L      P R E +                  + 
Sbjct: 372 HNATNAMAALALCRAIGLPASALLHGLRDYAGEPHRVELIAAFDDIEFFDDSKGTNVGAT 431

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +         VV   GG+        +       A   ++        D  +IR
Sbjct: 432 VAALSGLSKH------VVLIAGGEGKGQDFSPLATPVAQYARAVVLI-----GRDAPQIR 480

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A +       +E      A++ A+      D +++
Sbjct: 481 AALADSGVELVEAPTLEAAVQEAVARAQPGDAVLL 515


>gi|306832975|ref|ZP_07466107.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
 gi|304424874|gb|EFM28008.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
          Length = 452

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 136/425 (32%), Gaps = 54/425 (12%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS------- 103
           G   D +      + +G + I  S    L D +  +    P +  DN     +       
Sbjct: 41  GKTFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNPMVARAIEKNIPV 100

Query: 104 ----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A  +       I+ +TG++GK++  + + +     G S    G     +S    
Sbjct: 101 ITEVELAYMISAAP---IIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFPASEV-- 155

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                             ++     + +E SS  L     D         TNL   HIDY
Sbjct: 156 ----------------AQTATDKDILVMELSSFQL--MGTDTFHPHIAIITNLMPTHIDY 197

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y  AK  + + +   +   + +  D  +KE+ ++         +          
Sbjct: 198 HGTFEEYVAAKWNIQKNMTADDFVVLNFNQD-LAKELAQKTAAQVVPFSTTKKVDGAYLD 256

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   +  +  S           +PG   V NAL    +    GI +  + E L   
Sbjct: 257 GDTLYFKGEAIMKAS--------EIGVPGSHNVENALATIAVAKLSGIANDAIKETLTHF 308

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R + +G  +         +     +    K +    + ++I++   G DR     
Sbjct: 309 GGVKHRLQALGEINGVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFD 364

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  I      I I+ +  PR      ++         +++  +  +A R A +     
Sbjct: 365 ELVPDITGVKL-IVILGESAPR------VKRAADKANVPYVDAKDVADAARIAYDKAEAG 417

Query: 460 DVLVV 464
           DV+++
Sbjct: 418 DVVLL 422


>gi|296110605|ref|YP_003620986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
 gi|295832136|gb|ADG40017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
          Length = 448

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 114/352 (32%), Gaps = 41/352 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AVTG++GK++  S ++ + +  G      G   T  S   +N LT    + L  
Sbjct: 108 FNGRLIAVTGSNGKTTTTSLIRDMLESDGQQVTTAGNIGTPVSEVVEN-LTDEETLLL-- 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                          E SS  L       I+      TN+  +H+DYH ++  Y  AK +
Sbjct: 165 ---------------ELSSFQLL--GTPDIRPDIALITNIFANHLDYHGSRDNYVEAKFQ 207

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +     ++  +          + +                  ++   +   ++     
Sbjct: 208 ITKNQTVDQTLVLNAEGKDTQNFITRTNAKVVEFSRKSSEFMVTVNADSLMIANHPVMPL 267

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        L G   + N + A  +    G+  + + + LE    V  R +FV + 
Sbjct: 268 ---------TAIKLVGPHNLENIVAATTVAKLAGVHDSAIRQVLETFGGVAHRLQFVLSA 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           ++        A    + +  L +          +    G DR      ++  +      +
Sbjct: 319 NQIKFYNDSKATDIEATQTALNSFDQ-----PTIWLAGGLDRGDDLTRLVPNL--THVKV 371

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I        E  +KI           I   +  +A+  A+++    D++++
Sbjct: 372 VI-----AFGETQQKIVEVARAANKPVITVTDVTQAVPVAVKLAEAGDIVLL 418


>gi|262383988|ref|ZP_06077124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
 gi|262294886|gb|EEY82818.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
          Length = 445

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 107/361 (29%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I + +G+     G               
Sbjct: 95  EFAGRYTD---SKMICITGSNGKTTTTMLTYHILKEAGVDVGLAGNVGN----------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 141 ---SLALQV-----AEDPHAVYVIELSSFQLD--NMYDFRADIAIILNITPDHLDRYNYE 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   I + DD      + + H                 +K   
Sbjct: 191 MQNYVDAKFRILQNQTKDDAFIFWNDDPIIAREIAKRHPEATLYPFAETHENG--VKGYT 248

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +     T +        L  L G   +YN+L +      + I    +   L     V 
Sbjct: 249 ENNQVVIETANGTFTMEQDLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVE 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++         VV   GG         + 
Sbjct: 309 HRLEKVLRVRGVDYINDSKATNVNSCWYALQSMT------TPVVLILGGTDKGNDYSEIE 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        I         D  K+ A     +    +  +  EA+  A +M +K D ++
Sbjct: 363 ELVNKKVHSLIF-----MGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|300871753|ref|YP_003786626.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
 gi|300689454|gb|ADK32125.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
          Length = 460

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 138/412 (33%), Gaps = 48/412 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V SSA S  +          I+V+    + L+       G      +A++G+ GK++ 
Sbjct: 70  AVVSSSAISPTNEEIISAKKKNIIVIP-RGEMLAEIMRLKQG------IAISGSHGKTTT 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S + QI   + L+   I   +  +  +                          ++  EA
Sbjct: 123 TSLISQIMIEAKLNPICIIGGNHFNLKSNAYCNLNSE-----------------YMVCEA 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                   R   +  +    TN+  DH+DY+   +    A +    ++       + + +
Sbjct: 166 DESDGSFLR---LSPVFSVVTNIDNDHLDYYGNVEKLRLAFLDFINKVPFYGCSFLCFEN 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPG 308
           D   K++ K                 ++    +     K       + K   +F  PL G
Sbjct: 223 D-VVKDLAKSVSKKYYSYGFSNEYDFYVDKSSIKTEEFKTYFKAYYKDKFLGEFELPLIG 281

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  V N+L +  +   + ID+  + + L+    V  R        +   ++ DY H    
Sbjct: 282 EHNVLNSLASIAVAYHLDIDTDTIKKALKTFEGVGRRL--NKLYDKEITLFDDYGHHPTE 339

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDP-- 425
           ++  L ++R     R I+         + +  +   + A   AD  I+TD     E P  
Sbjct: 340 IKATLSSLRNAYKDRRIIAIFQPHRYSRTQLLLNDFENAFLDADNLIITDIYAAGESPIA 399

Query: 426 ----EKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               E I   +       I    +    +E I+         D+++  G G+
Sbjct: 400 GISGETICKIVKNNNIKYIKNIEDILPELEKIK------KDGDIIITLGAGN 445


>gi|119478638|ref|ZP_01618541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
 gi|119448415|gb|EAW29666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
          Length = 453

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 141/406 (34%), Gaps = 48/406 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A  Q A  ++VS    L   +     ++ I+V  +              +    I A
Sbjct: 62  ISDADLQNASRLLVSPGIGLDQPAIARAIDSGIIVCGDI--------DLFCEEAKAPIAA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++V + V  + +R G S+   G     +       L  P P            
Sbjct: 114 ITGSNGKTTVTTLVGLMAERCGRSAAVGGNIGVPALDL----LLEPEP------------ 157

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +E SS  L+  R D +   A +  N+  DH+D +     Y  AK R+F     
Sbjct: 158 ---DMYVLELSSFQLE--RADVLGFEAATVLNISADHMDRYPDLSTYRRAKYRIFNHC-- 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                        +  +          VLS G     +    +  ++  + +    E   
Sbjct: 211 ------KKKIINRADPLAAPYCGEDLDVLSFGLDRPGLKGFGLIDVNGVEYLAYQTEPLM 264

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G   + NAL A  L  A+G++ +L+ E L +   +  R + VG   +     
Sbjct: 265 AVGALKMVGRHNIENALAALALGFAMGLELSLMTEVLSEFSGLDHRCQLVGEYQQIKYYN 324

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
                   +    ++ +  +   + +++   G  +     P++  +    A   +V  + 
Sbjct: 325 DSKGTNVGAAIAAIEGLAAVA--KKVILIAGGEGKGADFSPLLP-VLKQFARAIVVIGE- 380

Query: 420 PRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             SE   K+   EII      +   +  +A+  A  +    D +++
Sbjct: 381 -ASEQLLKLCGDEIIA-----LRASSMQQAVEKAAMLAVSGDAVLL 420


>gi|116626353|ref|YP_828509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|122251657|sp|Q01Q46|MURD_SOLUE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116229515|gb|ABJ88224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 442

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 109/362 (30%), Gaps = 43/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+          + +TG++GK++  S    I + +G+     G      +   ++   
Sbjct: 94  ELAAPFLK---GRTIGITGSNGKTTTTSLTGHILREAGVPVQVGGNIGLPVTAMVESSRD 150

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                  +E SS  L+   +   +   G   N+ ++H+D H T 
Sbjct: 151 DG------------------WNVLELSSFQLET--IHEFRAHIGLALNVTQNHLDRHHTF 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  A      E       A++ A+D        R         S         L    
Sbjct: 191 ENYA-AIKGRLFETQQAGDYAVLNAEDPVCVAYAARTRATVQWFSSRKKVDPGATLCGNK 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +  +        P+ G   + N L AA      G++ A +   +     V 
Sbjct: 250 L-------VLFGKLLMEAGEIPIRGRHNIENVLAAAIAASRAGVEHAAIAAAVRSFRAVE 302

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFV   +         A + ++    L        G + V+    G +D+G      
Sbjct: 303 HRLEFVRKLNGVDFYNDSKATSVDATLKALDAF----PGGLWVIL---GGKDKGLDY--A 353

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   L + A             KI  +I  G    ++      A+R A       D ++
Sbjct: 354 ALREPLTEKA--RAALLIGAAAGKIAEQI-AGAVPLVDAKTLDGAVRHAFAHAAPGDTVL 410

Query: 464 VA 465
           +A
Sbjct: 411 LA 412


>gi|313813206|gb|EFS50920.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA1]
          Length = 471

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 91/270 (33%), Gaps = 11/270 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF+  + +      +          A        + +    V
Sbjct: 187 VVTNVEADHLDNWGTPQAYFDGFVSMATRPEVRYVVTNADDPGAAELACRLESTDTVRVV 246

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +   + L  +         T+            +PG + + NA  A  +   +GI
Sbjct: 247 TYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLLGI 306

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRII 385
               +L  +        RF+ VG       ++ DYAH    L   L   R +    GR+I
Sbjct: 307 SHQDLLTGIASFTGTLRRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRVVTGQGRVI 365

Query: 386 VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG 438
             F      R +      G  AL LAD  IV+D  P  EDP      E +   +I     
Sbjct: 366 ACFQPHLFSRTRDFAGEFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGD 424

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ++ +      E +   D++   G G
Sbjct: 425 SRYVPDKQDLPEALAEEVRPGDLVTTLGAG 454


>gi|198274310|ref|ZP_03206842.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
 gi|198272800|gb|EDY97069.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
          Length = 443

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 115/352 (32%), Gaps = 37/352 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++ +TG++GK++  S +  I +++GL+    G                         
Sbjct: 101 NAKMICITGSNGKTTTTSLIYHIFKKAGLNVGLAGNIG-------------------QSL 141

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              ++     +  +E SS  LD   +           N+  DH+D +  +   +      
Sbjct: 142 AYQVAECNYDYYVIELSSFQLD--NMYKFHANIAVLMNITPDHLDRYGFEMQNYVDAKFR 199

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             +    +   I + DD     + K  H  G       +  K           NK   T 
Sbjct: 200 IIQNQTDDDAFIFWNDDPI---IQKELHKYGIHGQYFPFAEKNEEGVAAFTEENKVYFTR 256

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +          L G   ++N++ A       GI    + E L     V  R E V    
Sbjct: 257 PIAFNMEQEELALTGTHNLFNSMAAGISANIAGIRKECIREALNDFKGVEHRLEKVARVK 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADI 412
               I    A   NS    L++++T    + I++    G +D+G     +  +  +    
Sbjct: 317 GVDYINDSKATNVNSCWYALQSMKT----KTILIL---GGKDKGNDYNEIADLVKEKCSG 369

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I    +  +E           G+P  ++  +  +A+  A  M  K + +++
Sbjct: 370 LIFLGLH--NEKLHDFFDNF--GLP-IVDVQSMPDAVNAAYNMAKKGETVLL 416


>gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
 gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
          Length = 464

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 149/451 (33%), Gaps = 58/451 (12%)

Query: 61  PQAIAQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDNTR--------KFLSLFA 106
            + I+ GA   +      V     L  ++A I  + P L+   +         + L +  
Sbjct: 46  DKLISMGARVALGHMAKNVKEDIDLVIYTAAIADDNPELLKAKSLGIKLLTRAEALGMLM 105

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           S          +A++GT GK++  S V   +       +  +G    +S    + ++   
Sbjct: 106 SEY-----NTSIAISGTHGKTTTTSMVSLILNNAKKDPTILVG--GNLSDINGNLKIGKS 158

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                             +   EA  +         ++       N+  DH+DY    + 
Sbjct: 159 E-----------------YFVTEACEY---MDSFLNLRPKVELILNIDSDHLDYFDDIEH 198

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              +  R F EL+PK+   I Y  + + K  +K   N      S G       + +    
Sbjct: 199 IAKS-FRAFAELVPKDGLVIGYDANPFVKAALKNVSNVVTFGFSRGSDYVAEDI-EFDHQ 256

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                   + E    +    +PGE  + NAL AA     +G+D + +   L +   +  R
Sbjct: 257 GLPSFKICNGENVVANVKLKIPGEHNIQNALAAAACTHTLGVDGSDIENTLNEFSGINRR 316

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGK 404
           F+ VG      ++  DYAH    +E  L   + +   R+  +F      R +        
Sbjct: 317 FDIVGMIGGSVKLVDDYAHHPTEIEATLDAAKKMKHNRLWCLFQPHTYTRTKALFSDFAP 376

Query: 405 IALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEML 456
                ADI ++ +     E        + I  +I    P        +  +      E L
Sbjct: 377 ALSK-ADIIVMNEIYAAREININKLSAKSIVEDIKKRFPEKEVYFFEDMEDMAGFVYENL 435

Query: 457 NKQDVLVVAGKGHETVHIVTNGEKKMSVDCD 487
              D+++  G G     I   GE  M  D +
Sbjct: 436 KINDLVITMGAGD----IFKAGELLMEYDRE 462


>gi|85374297|ref|YP_458359.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
 gi|84787380|gb|ABC63562.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
          Length = 476

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 122/414 (29%), Gaps = 53/414 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A V     S+ +         P L   +    L   A        E  +A+ GTSGKS
Sbjct: 83  ASAAV---EDSVPEVVRAKELGLPRLTRADLNAALFNSA--------ETGVAIAGTSGKS 131

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   +  I   +G            +          P    +   +    S+       
Sbjct: 132 TVTGMLGWILHHAGREP----TIMNGAVMKNFVSEGRPFASAVIGGVDLYVSEVDE---- 183

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              S  L Q ++  +  ++    ++      +    +A   A +   ++   +       
Sbjct: 184 SDGSIALYQPKVGLLLNVSLDHKSMEELRTLFGDYVEASDIAVINADDDEAIQ---LEGR 240

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +  +  + G    S            +             +  +   +  +P
Sbjct: 241 ADDAITFAIYDKGASIGVVDGSRADGPVRQAATVID----------RRDDSEHALVLHMP 290

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A     A G+  A  +  L +   +  RF+ +GT++ G  +  D+ H   
Sbjct: 291 GRHNLSNALAAIAGASAAGVQVADAVAALAEFKGLARRFDIIGTSASGITVIDDFGHNPE 350

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-------------LADIAI 414
                L+ ++         V         G    MG    +             L D   
Sbjct: 351 KCRATLRTLKAHPGR----VLAFFQPHGYGPLRQMGAELAETFAYELDADDITLLCDPVY 406

Query: 415 V--TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              T D  RS+  E+I   I       I    R       +      D +VV G
Sbjct: 407 FGGTVD--RSQGSERIVDLIAQAGGQAIHINTREGCGDWLVANAQPGDRIVVMG 458


>gi|288553163|ref|YP_003425098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
 gi|288544323|gb|ADC48206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
          Length = 450

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/390 (16%), Positives = 128/390 (32%), Gaps = 51/390 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +R N P++        LS            +++A+TG++GK++  + + +
Sbjct: 83  PYHNPIVKEAVRRNIPVITEVELASVLSE----------ADMIAITGSNGKTTTTTLIYE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + + S  +    G   T+S                        +     + +EASS  L 
Sbjct: 133 MLKNSAKNPLIAGNIGTVSCDVAKG------------------AASDDVIVLEASSFQLL 174

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
               +          NL   H+DYH T++ Y  AK ++       +       DD    +
Sbjct: 175 --GTENFHPNVSVLLNLFDAHLDYHGTKEEYVAAKSKITANQTEDDVFVY-NLDDPLVSQ 231

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           V +++  A     +     + +++ +              +         LPG   V N 
Sbjct: 232 VAEKSKAAKLPFSTKEVVSEGVYVNQGSIY-------FKDQLIIALSEVVLPGSHNVENI 284

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G  + +G     +   L+    V  R +FV   +         A    + +  L+ 
Sbjct: 285 LAAVGAAMTMGAKVTQIQHVLKTFSGVEHRLQFVKKINDRLFYNDSKATNILAAKKALEA 344

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-H 434
                    +++   G DR         ++A  L++   V       E  EK+       
Sbjct: 345 FSQ-----PVILLAGGLDRGN----EFDELASSLSN---VKALVAFGETKEKLARTAKGA 392

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           GI          +A+  A  +  + DV+++
Sbjct: 393 GIAEVEYADRVKDAVECAYRLSEEGDVILL 422


>gi|109899819|ref|YP_663074.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas atlantica
           T6c]
 gi|122971620|sp|Q15Q18|MURC_PSEA6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109702100|gb|ABG42020.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoalteromonas atlantica
           T6c]
          Length = 484

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 149/445 (33%), Gaps = 67/445 (15%)

Query: 44  WIFVAIVGNKEDGHLFIPQA--IAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTR 99
            IF         GH    QA  + + A  +VVSSA    +      +    P++     R
Sbjct: 64  TIFF--------GH----QASNVEK-ANVVVVSSAIDPTNPEVNAANEMRIPVI-----R 105

Query: 100 KF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSF 156
           +   L+      +G      +A+ GT GK++  S +  I  Q     +F IG    ++S 
Sbjct: 106 RAEMLAELMRFRHG------IAIAGTHGKTTTTSLIATIFAQAELDPTFVIG--GLLNSA 157

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
             + RL +         ++       + V                ++ +    TN+  DH
Sbjct: 158 GTNARLGSS-----QYLIAEADESDASFV---------------HLQPMVSVVTNIEPDH 197

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ++ +Q            F   LP    A++  DD    +++ R                 
Sbjct: 198 METYQGDFQKMQDTYIDFLHNLPFYGLAVLCIDDPVITQLLPRIKRKYLTYGYSEVADVR 257

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
               K     ++  +    + +D   +   PG+  V NAL A  +     I+ A +   L
Sbjct: 258 ATHVKHTFNQSEFTLK-RKDHQDIQVVVNAPGKHNVLNALAAIAVATDENIEDAAITAAL 316

Query: 337 EKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
                +  RFE +G  + G        DY H    +E  +   R     R +V+      
Sbjct: 317 ANFSGIGRRFEMLGEFATGEGDVLLVDDYGHHPTEVEATIAVARNNWPDRRLVMAYQPHR 376

Query: 394 RDQGKR--PIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGN 444
             + +       ++     D+ ++ D     E      D + +   +   G    I   +
Sbjct: 377 YSRTRDLYEDFVRVLSQ-VDVLLLLDVYSAGEEKIEGADSKSLCRSMRQRGQLEPIYVAD 435

Query: 445 RIEAIRTAIEMLNKQDVLVVAGKGH 469
           + E  +   + L  QD+L+  G G+
Sbjct: 436 KNELPKLLADNLKDQDILLTQGAGN 460


>gi|319407502|emb|CBI81150.1| UDP-N-acetylmuramate--alanine ligase [Bartonella sp. 1-1C]
          Length = 456

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 94/280 (33%), Gaps = 15/280 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P    A++  D    + +  R H
Sbjct: 154 LPADIAVVTNIDVEHLDHYGNFNAIREA-FRQFVENVPFYGFAVMCIDHPEVQTLASRIH 212

Query: 262 NAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          Q     L      +K C     +      + +  + + P+ G+  V NA
Sbjct: 213 DRWVITYGANPQADIRFLNLSMEGQKACFDILIRSRKTGEKIEISNLILPMSGKHNVSNA 272

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +GI    + + L +   V  RF   G N  G  I+ DY H    ++ +L  
Sbjct: 273 TAAIAIAHELGISPEAIKKGLAEFGGVKRRFTKTG-NWNGVEIFDDYGHHPVEIKAVLHA 331

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
            R    G II +                    + AD  ++T      E+P      +++ 
Sbjct: 332 ARESAKGNIIAIMQPHRYTRLYHLFDDFSTCFNDADTVMITPVYAAGEEPIAGFGSKELV 391

Query: 430 AEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I + G        +    I          D +V  G G
Sbjct: 392 EHIQMAGHRDVHLINSLENVISIVSRFAKSGDYVVFLGAG 431


>gi|302528928|ref|ZP_07281270.1| folylpolyglutamate synthase [Streptomyces sp. AA4]
 gi|302437823|gb|EFL09639.1| folylpolyglutamate synthase [Streptomyces sp. AA4]
          Length = 478

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 19/138 (13%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V        + VD AH       +   I       R++ V G   D+D   R 
Sbjct: 330 NPGRLERVRAAPA---VLVDAAHNPMGARALATTIADEFNFRRLVAVVGVLADKDA--RG 384

Query: 401 IMGKIALDLADIAIVTDDNPRS---EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           I+  +   ++D+ +    +PRS   ED  ++ A I  G    + + +   AI TAI ++ 
Sbjct: 385 ILDALEPVVSDVVVTRSSSPRSLPVEDLAELAASIF-GEDRVLAEPDLETAIETAIGLVE 443

Query: 458 KQD---------VLVVAG 466
           + D          ++V G
Sbjct: 444 QNDDPEEPLAGGGVLVTG 461


>gi|297621520|ref|YP_003709657.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
 gi|297376821|gb|ADI38651.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
          Length = 532

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 114/372 (30%), Gaps = 23/372 (6%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           K L   A +   K    ++ +TG+ GK+S    + Q+ Q            +  S+F   
Sbjct: 163 KILIKGAKQKLKKIDPYVIGITGSYGKTSTKDALGQLLQ-----------ITLGSTFWPS 211

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             + T   I  +             + + A   G    RL G+                 
Sbjct: 212 KGINTDMGITRSIRERLEPLTKYAVIEMAAYGTG-SIRRLCGLTPPHAGIITGIGLAHLD 270

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL--SVGYQGKFI 277
               Q           + +P+E   I   D+  ++++          +       +    
Sbjct: 271 RFGDQKTIYQAKSELAQAIPEEGILICNGDNPGTRQISAEFKKQTTLLYGLDNSKRDLDC 330

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            +  +       +  I  EGK F+ +  L G   + N   A  +  A+G         L 
Sbjct: 331 WITPLELTKEGTRFRIEWEGKSFEGITSLYGNTSLSNCAGAFAMACALGAQPDFAAAALS 390

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDR 394
            L  V  R +      R   I+  Y          L  +  + + + I++        ++
Sbjct: 391 TLIPVNNRLQISRDEER-TYIHDAYNSNPEGFLSALHVLHQMPARKRILMTPGMIELAEQ 449

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTA 452
           +      +G  A  + D+AI+     R E        I  G      I   +R EA    
Sbjct: 450 NLNMHHKVGYQAAKVCDLAILVGKTNR-ESLS--LGLIAGGFTQSQIITAEHRSEAFEKL 506

Query: 453 IEMLNKQDVLVV 464
             ++ K D +++
Sbjct: 507 AAVMEKGDAVLI 518


>gi|167745317|ref|ZP_02417444.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
 gi|167655038|gb|EDR99167.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
          Length = 468

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 93/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N+  DH+D H T + Y   K  + +     +   + Y
Sbjct: 178 EISSFQLET--IQDFRPQVSAVLNITPDHLDRHGTVEVYARTKESIGKNQTGDQVMVLNY 235

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  ++ + +RA+             + ++ K    +  + +   ++  +       L 
Sbjct: 236 -EDPVTRNMAERANARVVFFSLDHELEEGVYFKDGSFMLAENKTVQTICTE---ADINLL 291

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  +   +G+ +  + + +     V  R E+V T              ++
Sbjct: 292 GGHNYENILAAIAVSHYMGVPAEQIRKGVSGFKGVEHRIEYVDTIKDVAYYNDSKGTNTD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +K        R   + G G D+       +      + ++ ++          EK
Sbjct: 352 AAIKGIKA-----MNRPTFLIGGGYDKKAEYDDWIEAFDGKVKELILL------GATAEK 400

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G    +      EA+  A +     D +++
Sbjct: 401 IGKTAEAHGFSRIVYVDTLEEAVEYASKHAVSGDAVLL 438


>gi|29832662|ref|NP_827296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           avermitilis MA-4680]
 gi|60390553|sp|Q82AD8|MURD_STRAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29609782|dbj|BAC73831.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces avermitilis MA-4680]
          Length = 467

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 127/406 (31%), Gaps = 47/406 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV +  +          +   + V  +        A RL G      LAVTGT+GK++ 
Sbjct: 71  LIVTTPGWQPDKPLFAAAAEAGVPVWGDV-----ELAWRLRGPGSAPWLAVTGTNGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +GL +  +G        A     T                     ++VE 
Sbjct: 126 VQMLASILTAAGLRTAAVGNIGVSLLDAVLGEET------------------YDVLAVEL 167

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  N+  DH+D+H + +AY   K R++E         +    
Sbjct: 168 SSYQLHW--APSLRAHSATVLNIAPDHLDWHGSMEAYTADKGRIYEGNRVACVYNVADKA 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                              ++G  G          +      +    + +          
Sbjct: 226 TEDLVRAADVEEGCRAVGFTLGTPGPSQLGVVEGILVDRAFVEDRQKNAQELAEVADVHP 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           P    + NAL AA L  A G+ ++ V + L        R   V        I    A  +
Sbjct: 286 PAPHNIANALAAAALARAFGVPASAVRDGLRAFRPDAHRIAHVADVDGVTYIDDSKATNT 345

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++ E  L    +      IV    G  +      ++ K A  L  + ++        D  
Sbjct: 346 HAAEASLAAYGS------IVWIAGGLAKGASFDELVAKSAQRLRGVVLI------GADRA 393

Query: 427 KIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
            IR  +    P       +R +      A++ A  +    D +++A
Sbjct: 394 LIREALARHAPEVPVVDLDRTDTGAMPAAVQEARRLAVAGDTVLLA 439


>gi|69244714|ref|ZP_00602978.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257879366|ref|ZP_05659019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257881768|ref|ZP_05661421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257890192|ref|ZP_05669845.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257893520|ref|ZP_05673173.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|258615774|ref|ZP_05713544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecium DO]
 gi|260558808|ref|ZP_05830997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|293553185|ref|ZP_06673822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|293560474|ref|ZP_06676966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|293568300|ref|ZP_06679624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|294621603|ref|ZP_06700768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|314937871|ref|ZP_07845187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|314941362|ref|ZP_07848255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|314950121|ref|ZP_07853407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
 gi|314951338|ref|ZP_07854392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|314992831|ref|ZP_07858232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|314997991|ref|ZP_07862886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|68196305|gb|EAN10734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257813594|gb|EEV42352.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257817426|gb|EEV44754.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257826552|gb|EEV53178.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257829899|gb|EEV56506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|260075267|gb|EEW63580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|291589012|gb|EFF20836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|291598768|gb|EFF29820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|291602595|gb|EFF32810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|291605622|gb|EFF35064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|313588003|gb|EFR66848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|313592635|gb|EFR71480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|313596555|gb|EFR75400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|313599785|gb|EFR78628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|313642729|gb|EFS07309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|313643562|gb|EFS08142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
          Length = 453

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 22/279 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TN+   HIDYH T++ Y  AK  L + +  K+   + 
Sbjct: 168 MELSSFQL--MGITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + + +R         +       ++       + K+++    E         +
Sbjct: 226 WNQSELQE-LAQRTKARVLPFSTKEVLEDGVYADDYSIYYKKEKIMEISELG-------V 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A  +    GI +  + E L   H VP R ++VG            A   
Sbjct: 278 PGKHNVENALAAISVAKLYGISNEAIRETLHFFHGVPHRTQYVGEIQGRKFYNDSKATN- 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + + +V+   G DR      ++  +    A +          +  E
Sbjct: 337 --ILATKMALSGFETSK-VVLLAGGLDRGNTFDELIPSLKGIKAMVVF-------GQTKE 386

Query: 427 KIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+       GI   +   +  +A+  A+E     DV+++
Sbjct: 387 KLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVVLL 425


>gi|270340242|ref|ZP_06007559.2| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
 gi|270332137|gb|EFA42923.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
          Length = 497

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 113/350 (32%), Gaps = 35/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTG++GK++  S +  I + +G      G                   + L    
Sbjct: 156 SKMICVTGSNGKTTTTSLIYHIFKNAGYDVGLAGNIGR--------------SLALQV-- 199

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SS  LD   +   +       N+  DH+D +  +   +       
Sbjct: 200 ---AEDPHAYYIIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDYKFQNYVDAKMRI 254

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +E   I + DD   K+ +++      +      + K            + ++   
Sbjct: 255 IRNQTEEDSFIYWNDDPVVKKELEKYDIHAVQCPFSELKEKGSIGY---IEEGQYKLEYP 311

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V          L G+  +YN+L A       GI    + + L     V  R E V   + 
Sbjct: 312 VPFNMEQERLSLTGKHNIYNSLAAGLASNISGIRKEQIRKSLSDFPGVEHRLEKVCDVAG 371

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++    L+++ T       ++   G D+      I   +      +  
Sbjct: 372 VHYINDSKATNVDACWYALESMTT-----PTILIIGGRDKGNNYDAIKELVKQKCVGLVY 426

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DN +  D      ++  GIP   +  +  + +    +M    D +++
Sbjct: 427 LGADNKKLHDN---FDDL--GIP-VADTHSMKDCVEACYKMAKTGDTVLL 470


>gi|213965279|ref|ZP_03393476.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
 gi|213952131|gb|EEB63516.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
          Length = 497

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 85/429 (19%), Positives = 135/429 (31%), Gaps = 68/429 (15%)

Query: 70  AIVVSSAY---SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A+V+S A    +  + +     + P+L   +    L               L + GT GK
Sbjct: 84  AVVISFAAIPKTNPELAGAHELDIPVLKRSDVLALL---------MQDSKALLIAGTHGK 134

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +GL          +S    +    +          S  S        
Sbjct: 135 TSTTSMTVAALQAAGLD-PSFAVGGLMSKAGVNAHQGSGDVFVAEADESDASLLTYQ--- 190

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+D+    + Y  A    F E +      ++
Sbjct: 191 -----------------PEVAVITNIEPDHLDFFGDDETY-YAVFDAFAERIKDGGHLVV 232

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT---------ISVEG 297
            A+D ++  + +RA   G  VL+ G +        +         T          +V  
Sbjct: 233 CAEDPHAAALGERAVERGINVLAYGGEDALAKHPTLPVGAVLHGWTPVGGGARVEATVGS 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F    PG     NAL A      +G D   +   L +   V  RF++ G+   G  
Sbjct: 293 TSVRFELHQPGRHMALNALAAMVGGDCVGADLGRMARGLGEFTGVRRRFDYHGSIGEGPF 352

Query: 358 ----IYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFG-CGGDRDQGKRPIMGKIALD 408
               IY DYAH    +  +L   R +      G +I VF      R +         AL 
Sbjct: 353 VGARIYDDYAHHPTEVSAVLGAARELVTEAGRGNVIAVFQPHLYSRTRNFADEFA-AALS 411

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI---IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           LAD A++ D     E+P        I  ++   +   P F     R        E+    
Sbjct: 412 LADKAVLLDVFGAREEPLPGVDGALIANKMTIPVTYEPHFTSVPAR------VREIAEPH 465

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 466 DVILTIGAG 474


>gi|153814139|ref|ZP_01966807.1| hypothetical protein RUMTOR_00348 [Ruminococcus torques ATCC 27756]
 gi|145848535|gb|EDK25453.1| hypothetical protein RUMTOR_00348 [Ruminococcus torques ATCC 27756]
          Length = 445

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGK 404
           F      S      VD AH  ++ + + ++I     GR  I + G   D++  K   + +
Sbjct: 301 FGRFTCISEWPVFLVDGAHNEDAAKRLRESIEAYFPGRKLIYIMGVFQDKEYEK---IIR 357

Query: 405 IALDLADIAIVTDDNPRSE---DPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +  A     T D P  E     +K++  +      +P +   G   +A++ A+E  ++
Sbjct: 358 LTIPYAKCVY-TVDLPNKERTLSAQKLKEAVEAQSEYVPAYA-VGEIKQAVKEALENADE 415

Query: 459 QDVLVVAG 466
            DV++  G
Sbjct: 416 DDVILAFG 423


>gi|221065136|ref|ZP_03541241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
 gi|220710159|gb|EED65527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
          Length = 632

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 117/373 (31%), Gaps = 46/373 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +   +L +TGT+GK++V S   Q+ +  GLS    G          D          L  
Sbjct: 246 YAPKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPT---LLDTLSGRIDAETL-- 300

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         +E SS  LD  R  G +  A +  N+ +DH+D+H   QAY +AK  
Sbjct: 301 ---------PQAWVLELSSFQLDDCR--GFEPTAATVLNITQDHLDWHGGMQAYADAKAH 349

Query: 233 LFEELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +F E         +   +       +    +        V   G   +      +  ++ 
Sbjct: 350 VFGEQALMVLNREDPVVMAMLPAPVAVPGKRGKTFQRAHVTFGGDMPRRPGDFGLEVVNG 409

Query: 288 KQQVTISVEGKDFDFLFP----------------LPGEFQVYNALVAAGLCIAIGIDSAL 331
              +  + E  +                      + G     NAL A  L    G   A 
Sbjct: 410 MTWLVRAHEADETSKGKNVDDLHIVRLMPADALRIRGRHNAINALSALALATGAGCTLAP 469

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L  L +    P R + VG                 +       +  +     IVV   G
Sbjct: 470 LLYGLREYRGEPHRVQPVGRVGDVEYFDDSKGTNVGATVA---ALMGLGPDHRIVVILGG 526

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
             + Q   P+           A++       +D  +IR  +       ++     +A++ 
Sbjct: 527 LGKGQDFTPL-AAPVSRYVRAAVLI-----GQDAPQIREALGDTGVTLVDAATMQDAVQQ 580

Query: 452 AIEMLNKQDVLVV 464
           A  + +  D +++
Sbjct: 581 AARLAHAGDAVLL 593


>gi|293365023|ref|ZP_06611740.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307702267|ref|ZP_07639227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|291316473|gb|EFE56909.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307624280|gb|EFO03257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
          Length = 450

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQRGLLSGNIGYPASQV------------------AQTATAKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K         +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELATKTQATVVPFSTQEKVDGAYLEDGQLYFRGEVVMAASEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDEIQGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|251779958|ref|ZP_04822878.1| tetrahydrofolate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084273|gb|EES50163.1| tetrahydrofolate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 437

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 135/391 (34%), Gaps = 45/391 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP---------TSTISSFAQDNRL 162
           +    ++ + GT+GK S  S +  I    G                           N+L
Sbjct: 38  QKKLKLIHIAGTNGKGSTTSMITSILIGMGYKVGMYTSPFLEEFEERIQINGENIPKNKL 97

Query: 163 T---------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
           T                     T   I       Y  ++ V +  +E    G +    + 
Sbjct: 98  TELINTVKKAVDKVIEEGYEHPTEFEILTTVMYLYYYNEKVDYAVIEVG-LGGELDSTNV 156

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I  I    T++  DH++      + +   M+    +  +    +    +   + ++++A 
Sbjct: 157 ITPIVSVITSISFDHMNILGN--SLYEIAMQKAGIIKEEIPVVVYPQTNEAMRAIIEKAK 214

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--- 318
               +V  +          K       Q+V I    + ++   PL GE Q+ N  VA   
Sbjct: 215 ITNSKVCEINSNSGTFIEVKHE-EKFYQKVKIDTGKELYNVNLPLMGEHQILNLSVALTT 273

Query: 319 --AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
                     I +  ++E+  +     GR E +   ++   I +D AH  + ++M+  N+
Sbjct: 274 IEILCEREGLILNKELIENSIESVKWRGRLEVL---NKEPLIVMDGAHNIDGIKMLKSNV 330

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHG 435
           +     +   VF   G     +   M K    +A     +T  + R+E   +++  I+  
Sbjct: 331 KKYF--KYNNVFLLLGILADKQVEEMIKEITPMAYKVYALTPHSDRAELNTELKDHILKY 388

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               I   +  EA++T +     +D+++++G
Sbjct: 389 NKNTIALDSYEEAMKTVLSEATSEDLILISG 419


>gi|118581691|ref|YP_902941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
 gi|158512568|sp|A1AU63|MURD_PELPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118504401|gb|ABL00884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
          Length = 446

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 118/360 (32%), Gaps = 41/360 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             ASR        ++A+TGT+GK++  +    I  ++G  +F  G             L 
Sbjct: 100 ELASRFIQAP---LVAITGTNGKTTATTITGDIFIKNGFRTFVGGNIGNPLIEL----LE 152

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           +  P+                V  E SS  L+  R    +    +  NL  DH+D + + 
Sbjct: 153 SAEPVE--------------RVVAEISSFQLEWIR--AFRPAVAALLNLSEDHLDRYASY 196

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK+R+FE     +  A++ ADD    E  +                + I  ++  
Sbjct: 197 REYIEAKLRIFENQTADD-YAVVNADDELVMEHSRGLRACLFPFSRKQELDEGIFHREGL 255

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +              F       G   + N + A    + +       L  + +   + 
Sbjct: 256 IVWRHNGREERFPTAGFRLQ----GVHNLENIMAALACSLLLECRPTESLACVREFEALH 311

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EFV   +         A    S+E  L++         I +   G D+     P+  
Sbjct: 312 HRMEFVRELNGVRWYEDSKATNVGSVEKALESF------DAITLIAGGKDKGGSYSPL-S 364

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++  +     ++       E   +++ E+   +          EA+  A E+      ++
Sbjct: 365 RLVRERVRHLVLI-----GEAAGRMQEELGT-LTDTRRAATLEEAVSLAAELTAPGGTVL 418


>gi|149910625|ref|ZP_01899263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
 gi|149806353|gb|EDM66328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
          Length = 445

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 122/356 (34%), Gaps = 50/356 (14%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I+A+TG++GKS+V + V ++   +G+ +   G                   + L   
Sbjct: 108 KAPIIAITGSNGKSTVTTLVGEMANAAGVKTAIGGNIGIP-------------ALDL--- 151

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                ++      +E SS  L+      +K +A +  N+  DH+D +   +AY  AK+ +
Sbjct: 152 --LDVAEPYQLYVLELSSFQLET--THSLKAVAATVLNVTDDHLDRYPDFEAYRQAKLSI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +++     +            +V+        R +     G       +        +  
Sbjct: 208 YQDAQTIVT---------NRDDVLTVCATQDNRDVGKHSVGADDADYGLIQQQGCTWLAY 258

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             EG        + G   + NAL A  L  A G+D    L  L++   +  R EF+   +
Sbjct: 259 QGEGIISADDLQITGVHNLMNALSAIALLDAAGVDRIKTLPGLKQFTGLAHRCEFIRKLN 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A    +    L  +++   GR+ ++ G  G     K    G +   L D  
Sbjct: 319 DVMWINDTKATNVGATLAALDGLKSSVKGRLYLIAGGDG-----KGADFGPLVPALRDDI 373

Query: 414 IVT----DDNPRSEDPEKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +T     D  R             G+        +   AI    +++   D +++
Sbjct: 374 ALTYCFGKDGVRF-----------AGLAENTKLVADLDTAIAEISQLVQPGDWVLL 418


>gi|309792832|ref|ZP_07687274.1| FolC bifunctional protein [Oscillochloris trichoides DG6]
 gi|308225144|gb|EFO78930.1| FolC bifunctional protein [Oscillochloris trichoides DG6]
          Length = 435

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 13/142 (9%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
              +         PGRFE +        I +D AH  +S + ++  +R  +T  R+I+V 
Sbjct: 284 DAAMAQGLATAQWPGRFEVLPGRPC---ILLDGAHNGDSAQKLMVALRAELTFERLILVL 340

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSED---PEKIRAEIIHGIPGFIEKGN 444
           G   D+D      +    +  A   ++T   +PR+ D      I    + G        +
Sbjct: 341 GTSRDKDIEG---IVAALVPHAAALVITRSVHPRAMDLDRVATIAQPYLRG--SIDLVPD 395

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             +A+  A  +    D++ V G
Sbjct: 396 IGDALLQAQALATPNDLICVTG 417


>gi|160896918|ref|YP_001562500.1| UDP-N-acetylmuramate--L-alanine ligase [Delftia acidovorans SPH-1]
 gi|229486487|sp|A9BUK7|MURC_DELAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160362502|gb|ABX34115.1| UDP-N-acetylmuramate--alanine ligase [Delftia acidovorans SPH-1]
          Length = 477

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 135/432 (31%), Gaps = 55/432 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I  GA+A+V S+A    +          I VV      L+       G    
Sbjct: 56  GH--AAAHIE-GADAVVTSTAVQSDNPEVLAARERKIPVVPRAL-MLAELMRFKQG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ G  GK++  S V  +   +G   +F IG    ++S   + +L     I +    
Sbjct: 108 --IAIAGAHGKTTTTSLVTSVLAEAGLDPTFVIG--GKLNSAGANAKLGQGDYIVVEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH++ +             F
Sbjct: 164 SDASFLN--------------------LLPVMAVVTNIDADHMETYGHDFGRLKGAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P    AI+  D    +E++ +                 +    V A       T+ 
Sbjct: 204 LHRMPFYGRAIVCVDSPAVREILPQVARPVTTYGFAE--DAQVRALNVRAEAGSMHFTVR 261

Query: 295 VEGKDFDFLFPL----PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                      +    PGE  V NAL A  + + + I    +L   E    V  RF+  G
Sbjct: 262 RSNGQSYPDLDVVLSLPGEHNVLNALSAVAVAMELEISDDALLRAFESFKGVGRRFQRYG 321

Query: 351 T----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGK 404
                +     +  DY H    +   L   R    GR +V+        + +       K
Sbjct: 322 ELAAADGGSFTVIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVK 381

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIE-ML 456
           +   LAD  ++T+     E P        +   +   G    +   N  E +  AI    
Sbjct: 382 VIG-LADAVLLTEVYAAGEAPVVAADGRSLARALRVAGRVEPVFVENVAE-LPAAIAVNA 439

Query: 457 NKQDVLVVAGKG 468
              DVL+  G G
Sbjct: 440 RDGDVLLCMGAG 451


>gi|55377104|ref|YP_134954.1| dihydropteroate synthase [Haloarcula marismortui ATCC 43049]
 gi|55229829|gb|AAV45248.1| dihydropteroate synthase [Haloarcula marismortui ATCC 43049]
          Length = 814

 Score = 58.4 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 9/171 (5%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              D   PL G  Q  NA +AA LC  +   S   LE   +    PGRFE +   +    
Sbjct: 244 WRVDTYLPLLGAHQAQNAGIAATLCQQVADISQTDLERGLRNAHWPGRFEVM---NESPL 300

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           + +D AH   S+E   + + +     + VV G   D+D  +       AL   D  +   
Sbjct: 301 VVLDGAHNPGSIERTAETLSSFDYDNLHVVIGAMVDKDHER----IAAALPDPDHVVACQ 356

Query: 418 DN-PRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466
            N  R+E    + A + +     +E + +   A+  A++  +  D ++V G
Sbjct: 357 PNVDRAESHHVVAAAVENATDATVETRSDVAGALDIALDAADSGDAVLVVG 407


>gi|312898924|ref|ZP_07758312.1| protein FolC [Megasphaera micronuciformis F0359]
 gi|310620086|gb|EFQ03658.1| protein FolC [Megasphaera micronuciformis F0359]
          Length = 437

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
            L +         PGRF+ +  +  G  + +D AH    +E   +         R + VF
Sbjct: 287 DLAIMKGFHTVYWPGRFQIL--SVSGKTMIIDGAHNPAGVESFCRTYEEVFGKRRRVFVF 344

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               D++  K   + +      D         PR+ DP+ +   I  G        +   
Sbjct: 345 SVLADKEYDK---IVRRLFRANDAVFCAPAPTPRTADPKVMADLIGEGAKA---CPSVSA 398

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           AI TA++   ++DV VV G
Sbjct: 399 AIDTALKETTEKDVCVVVG 417


>gi|307328984|ref|ZP_07608152.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
 gi|306885346|gb|EFN16364.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
          Length = 474

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 87/460 (18%), Positives = 145/460 (31%), Gaps = 72/460 (15%)

Query: 47  VAIVGNKEDGHL-----------------FIPQA---IAQGAEAIVVSSAYSLQDFSATI 86
           +A+ G +  G                    I  A   IA  A  +VVSSA    +     
Sbjct: 31  LAMRGARVSGSDTKDSPIVGALRELGATVHIGHAAGNIAADATGVVVSSAIRADNLELVT 90

Query: 87  RS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                  ++   +    L               +AV GT GK++  S +    +  GL  
Sbjct: 91  AHERGIAVVHRSDALAALMD---------GSRPIAVAGTHGKTTTTSMLAVSLRTLGLDP 141

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +     + +     R             S  S                          
Sbjct: 142 SYV-IGGDLDAPGSSARHGDGEIFVAEADESDRSFHKYA--------------------P 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA---H 261
                 N+  DH   + +      A    F   +      +I AD + ++E+  R     
Sbjct: 181 EVAIILNVELDHHANYASMDEI-YASFETFVGRIRSGGALVISADQSGARELTARVSGGE 239

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI----SVEGKDFDFLFPLPGEFQVYNALV 317
                +     +   + +  +       +VT+    S+ G +  F   +PG     NA+ 
Sbjct: 240 EPPRVLTYGEDESADVRVLAIEPHGLTSEVTVRLAESLGGAEITFTVSVPGRHYALNAVA 299

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A     A+G+ +  +   L     V  R +  GT + G ++   YAH    +   L+ IR
Sbjct: 300 ALTAGAALGVPAGELAPALASYTGVKRRLQLKGTAA-GVQVIDSYAHHPTEIAADLEAIR 358

Query: 378 T-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
                GR++VVF      R Q     MG+ AL LAD ++V D  P  EDP        + 
Sbjct: 359 GGAGEGRVLVVFQPHLFSRTQELGTEMGE-ALALADASVVLDIYPAREDPVPGITSGLVI 417

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKG 468
                       + +R  A+   I  M    D+++  G G
Sbjct: 418 DAAARHGADVTAEHDRN-AVPELIAGMAKPGDLVLTMGAG 456


>gi|255536592|ref|YP_003096963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342788|gb|ACU08901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 457

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 113/362 (31%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         I+A+TG++GK++  S +  I +  GL     G               
Sbjct: 103 EFASEFTN---AKIIAITGSNGKTTTTSLIYHILKNDGLKVGLGGNIGKS---------- 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQT 222
                        ++ +   +  +E SS  LD   +   +       NL +DH   Y+  
Sbjct: 150 ---------FAKQVADESFDYYVLEVSSFQLDD--IQNFRPHISLLLNLSQDHLDQYNYN 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y  AK R+ E             D+     + K    A     S+  + K       
Sbjct: 199 YEEYALAKFRIAENQENDNFFIYNKDDEMSQNLLEKLEVKAKMIPFSLKEKLKEGGFFTG 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +  K Q   S++  +   +        V N+L A+     + I +  +   L     V
Sbjct: 259 DKMVVKLQDEFSMDIAELALVGNH----NVANSLAASIAGKILKISNESIRNSLMTFQAV 314

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A     +      + ++    + +V G     D  +   +
Sbjct: 315 QHRLEQVAETGGVRFINDSKATN---VNATYYALESMKQPTVWIVGGIDKGNDYTEIEDL 371

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            K  +    I  +  DN      +KI               +  EA+  +  +  K D +
Sbjct: 372 VKRKVKA--IVCLGLDN------QKIVDFFKSKKDLIYSTSSMAEAVNISKSLAAKGDAV 423

Query: 463 VV 464
           ++
Sbjct: 424 LL 425


>gi|255024440|ref|ZP_05296426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-208]
          Length = 66

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 456 LNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLIL 497
               DV+++AGKGHE   ++ + E     D    R  +   L
Sbjct: 1   AEAGDVILIAGKGHEDYQLIGD-EVIDFDDRVEARIAIEKKL 41


>gi|238751277|ref|ZP_04612771.1| Folylpolyglutamate synthase [Yersinia rohdei ATCC 43380]
 gi|238710551|gb|EEQ02775.1| Folylpolyglutamate synthase [Yersinia rohdei ATCC 43380]
          Length = 404

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 68/192 (35%), Gaps = 13/192 (6%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHL 336
           + + V    ++ + + + +  +  +         + NA  A  +    G+      +   
Sbjct: 209 YQRNVAWQFSQHEHSWNWQCGEHQWCNLPLPNVPLANAATALAVLHYSGLPLSEEAIHQG 268

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD 395
            +   +PGRF+ V        + +D AH  ++   +   +  +   G++  V G   D+D
Sbjct: 269 LQTASLPGRFQVVSEQPL---LILDVAHNPHAARYLTDKLAQLPKQGKVRAVVGMLSDKD 325

Query: 396 QGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            G          +  D       + PR         ++   +    +  +   A R A++
Sbjct: 326 IGGT---LTCLSEQVDEWYCAPLEGPRG----ASAEQLAEHLASSRQFSDVTTAWRQAMQ 378

Query: 455 MLNKQDVLVVAG 466
               QDV++V G
Sbjct: 379 DAAPQDVVIVCG 390


>gi|225548647|ref|ZP_03769694.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 94a]
 gi|225370677|gb|EEH00113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 94a]
          Length = 451

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 122/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQNIFYCNEGKVYFNGNLIGSFSNSRAVFIIPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILNNFKGIEHRLEFVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|319937184|ref|ZP_08011591.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. 29_1]
 gi|319807550|gb|EFW04143.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. 29_1]
          Length = 436

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 17/274 (6%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q      +       N+  DH+DY Q+ + Y  +  +   +    +   +++ DD +   
Sbjct: 154 QDHFLHYQPTYAVINNIEMDHVDYFQSIEQYVQSFEQFANQ---VKDTVVVWGDDPHLPH 210

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +    +        +  +   I    +   H               F  P  G   +Y++
Sbjct: 211 L---NYTKRVLKFGISDKNDVIAKNIINNNHGLYFDVYIHGDLFGHFALPFYGMHMLYDS 267

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    L     +D+  + + L     V  R+              DYAH   +++ +++ 
Sbjct: 268 LAVITLGYLENMDADYIQKRLSTFDGVKRRYTVQ--EVGNNVYVDDYAHHPTAIKYVIEA 325

Query: 376 IRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVT--DDNPRSEDPEKI-RA 430
            R+   G+ IV         +G R      + +++LAD   +    +N + E    I   
Sbjct: 326 TRSRYPGKEIVAIFQPDRFSRGLRFAKEFAE-SMNLADYPFLVHFPENAKKEAGIDIDIH 384

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           EI   +P  I      +A++    +    DV+ +
Sbjct: 385 EIGQYLPRAIVIHEDEDAVKL---LAEHDDVVFL 415


>gi|295091436|emb|CBK77543.1| folylpolyglutamate synthase/dihydrofolate synthase [Clostridium cf.
           saccharolyticum K10]
          Length = 456

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 23/188 (12%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                +  +     P   ++Q  NA++A      I       +    +  V PGR E + 
Sbjct: 260 HLFIRKNGEEPLEIPFAAQYQAVNAMLAV-QAAEILGIPERAVREGLQKTVWPGRMEEIM 318

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-L 409
                  +Y+D AH    +    +   +++  R I++F    D++      M +I L   
Sbjct: 319 PG-----VYLDGAHNEGGIRAFARAAASLSGKRKILLFAVSSDKEY---REMAEILLREF 370

Query: 410 A-DIAIVTD-------DNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNK 458
           A D+ I+T        D  R E+    R  +       P    + +  EA+ TA++   +
Sbjct: 371 APDVLILTQIAYGRGLDIHRLEEAS--REAMAKAGGHGPRLFVRPSAEEALLTALDEKGE 428

Query: 459 QDVLVVAG 466
           +D +  AG
Sbjct: 429 EDTVFCAG 436


>gi|270295448|ref|ZP_06201649.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D20]
 gi|270274695|gb|EFA20556.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D20]
          Length = 461

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 117/364 (32%), Gaps = 41/364 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +A
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLLHQSHVGCTAF-LGGISKNYGTNLLLSATSPYTVIEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             +  S                      +       T    DH+D + T++AY  +    
Sbjct: 170 DEFDRSFHW-------------------LSPWMSVITATDPDHLDIYGTKEAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVT 292
              + P  +  +    +      M+     G    +        H + +           
Sbjct: 211 TTLIQPGGALILHKGLE------MQADVQPGVTTYTYSRNEGDFHAENIRIGNGEIFIDF 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ + +  D    +P    + N + A  L    G     + + +     V  RF+F    
Sbjct: 265 VAPDTRINDIQLGVPVSINIENGVAAMALAHLSGATDEEIKQGMASFRGVDRRFDF-KLK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
           +       DYAH    +   +K++R +   + I V        R +            L+
Sbjct: 324 NDRIVFLSDYAHHPAEIAQSVKSVRELYQDKKITVIFQPHLYTRTRDFYRDFADSLS-LS 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+T+  P  E P      + I   +  GI   I    R E + + +      +VLVV
Sbjct: 383 DEVILTEIYPAREQPIPGVTSQLIYDNLRPGIEKCIC---RKEDVLSLLAQ-KHTEVLVV 438

Query: 465 AGKG 468
            G G
Sbjct: 439 LGAG 442


>gi|226307038|ref|YP_002766998.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus erythropolis
           PR4]
 gi|259509779|sp|C1A0X4|MURC_RHOE4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226186155|dbj|BAH34259.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus erythropolis
           PR4]
          Length = 502

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 139/439 (31%), Gaps = 43/439 (9%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G   +V + A   +D    + +     P+++        ++ AS +
Sbjct: 59  GHD--ADALDLLPGGPTVVVTTHAAIPKDNPELVEAARRGIPVILRP------AVLASLM 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G        V+GT GK+S  S +    Q  G           ++    +    +     
Sbjct: 111 QGN---RTFLVSGTHGKTSTTSMLVVALQHCGFD-PSFAVGGELNEAGTNAHHGSGDVFV 166

Query: 170 LAKALSYL---SSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                S            V     +  LD    ++    +   F +  R           
Sbjct: 167 AEADESDGSLLQYDPNVIVVTNIEADHLDYFGSVEAYVKVFDDFVDKLRPGGLLIACLDD 226

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             +A +        +    ++    A ++EV           + VG +    H   V   
Sbjct: 227 PGSADLAKRIVASGRSDIRVLGYGSADAQEVEAGTAFEPVDGVEVGVRLLGFHAHDV--- 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
               Q  ++ E         +PG     NAL A       G ++  ++E L     V  R
Sbjct: 284 GGVLQFQLAGENAARTVRMAVPGRHMALNALAALLAARDAGAETEEIVEGLAGFGGVHRR 343

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS------------GRIIVVFG-CGG 392
           F+F G    G R++ DYAH    +  +L     +              GR+IVVF     
Sbjct: 344 FQFTGRER-GVRVFDDYAHHPTEVRAVLGAAADLVRPEDDSSSTNSAAGRVIVVFQPHLY 402

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAI 449
            R         + ALDLAD  +V D     E+P    +  +           + +  +A 
Sbjct: 403 SRTAAFAVEFAQ-ALDLADEVVVLDVYGAREEPMPGVSGALVAQSVTKPVHYQPDLSQAP 461

Query: 450 RTAIEMLNKQDVLVVAGKG 468
           +    + +  D+++  G G
Sbjct: 462 KQVAALAHPGDIVITMGAG 480


>gi|291087162|ref|ZP_06571832.1| tetrahydrofolate synthase [Clostridium sp. M62/1]
 gi|291075829|gb|EFE13193.1| tetrahydrofolate synthase [Clostridium sp. M62/1]
          Length = 469

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 23/188 (12%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                +  +     P   ++Q  NA++A      I       +    +  V PGR E + 
Sbjct: 273 HLFIRKNGEEPLEIPFAAQYQAVNAMLAV-QAAEILGIPERAVREGLQKTVWPGRMEEIM 331

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-L 409
                  +Y+D AH    +    +   +++  R I++F    D++      M +I L   
Sbjct: 332 PG-----VYLDGAHNEGGIRAFARAAASLSGKRKILLFAVSSDKEY---REMAEILLREF 383

Query: 410 A-DIAIVTD-------DNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNK 458
           A D+ I+T        D  R E+    R  +       P    + +  EA+ TA++   +
Sbjct: 384 APDVLILTQIAYGRGLDIHRLEEAS--REAMAKAGGHGPRLFVRPSAEEALLTALDEKGE 441

Query: 459 QDVLVVAG 466
           +D +  AG
Sbjct: 442 EDTVFCAG 449


>gi|160891421|ref|ZP_02072424.1| hypothetical protein BACUNI_03871 [Bacteroides uniformis ATCC 8492]
 gi|156858828|gb|EDO52259.1| hypothetical protein BACUNI_03871 [Bacteroides uniformis ATCC 8492]
          Length = 481

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 117/364 (32%), Gaps = 41/364 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +A
Sbjct: 131 SSKGLCVAGTHGKTTTSTMAAHLLHQSHVGCTAF-LGGISKNYGTNLLLSATSPYTVIEA 189

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             +  S                      +       T    DH+D + T++AY  +    
Sbjct: 190 DEFDRSFHW-------------------LSPWMSVITATDPDHLDIYGTKEAYLESFRHY 230

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVT 292
              + P  +  +    +      M+     G    +        H + +           
Sbjct: 231 TTLIQPGGALILHKGLE------MQADVQPGVTTYTYSRNEGDFHAENIRIGNGEIFIDF 284

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ + +  D    +P    + N + A  L    G     + + +     V  RF+F    
Sbjct: 285 VAPDTRINDIQLGVPVSINIENGVAAMALAHLSGATDEEIKQGMASFRGVDRRFDF-KLK 343

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
           +       DYAH    +   +K++R +   + I V        R +            L+
Sbjct: 344 NDRIVFLSDYAHHPAEIAQSVKSVRELYQDKKITVIFQPHLYTRTRDFYRDFADSLS-LS 402

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+T+  P  E P      + I   +  GI   I    R E + + +      +VLVV
Sbjct: 403 DEVILTEIYPAREQPIPGVTSQLIYDNLRPGIEKCIC---RKEDVLSLLAQ-KHTEVLVV 458

Query: 465 AGKG 468
            G G
Sbjct: 459 LGAG 462


>gi|116253047|ref|YP_768885.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|189029026|sp|Q1ME34|MURC_RHIL3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115257695|emb|CAK08793.1| putative UDP-N-acetylmuramate--L-alanine ligase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 471

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 88/281 (31%), Gaps = 17/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNAL 316
                              ++    +   V I                P+PG   + NA 
Sbjct: 233 RKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVIELKGLVMPMPGRHNISNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI SA + + L     V  RF   G    G +I+ DY H    ++ +L+  
Sbjct: 293 AAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK------I 428
           R    GR+I V      R      +  + A     AD   +       EDP +      +
Sbjct: 352 RESCKGRVIAV--HQPHRFSRLASLFEEFAACFNDADSIFLAPVYAAGEDPIEGIDSVSL 409

Query: 429 RAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            + I  G           E + +   E+    D +V+ G G
Sbjct: 410 VSRIKSGGHRDARFLTSAEFLPQMVAEVAKPGDFVVLLGAG 450


>gi|117922174|ref|YP_871366.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
 gi|166224731|sp|A0L1P1|MURC_SHESA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117614506|gb|ABK49960.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
          Length = 488

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 81/441 (18%), Positives = 158/441 (35%), Gaps = 56/441 (12%)

Query: 47  VAIVGNKED---GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-- 101
           + ++G K     G   + QA     + +VVS+A + ++          I +V   R+   
Sbjct: 61  LCLLGAKIHIGHGADNVQQA-----DVVVVSTAINPENPEIIAAKELRIPIV---RRAEM 112

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+      +G      +A+ GT GK++  S +  +  ++G     +     ++S   + R
Sbjct: 113 LAELMRYRHG------VAIAGTHGKTTTTSLIASLYGQAGRDPTFV-IGGLLNSAGTNAR 165

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L T   +    A +  S     H+    S                   TN+  DH+D + 
Sbjct: 166 LGTSRYL---IAEADESDASFLHLQPMVS-----------------VVTNIEADHMDTYG 205

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                  +    F   LP    A++  DDA  +E+M R                      
Sbjct: 206 GDFEKLKSTFVDFLHNLPFYGVAVVCIDDAVVREIMPRIGRHMITYGFSDDADV--QALN 263

Query: 282 VCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                ++ + T+  +GK+  D L  LPG+  V NAL A  +     ID + +++ L +  
Sbjct: 264 FHQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQ 323

Query: 341 VVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRD 395
            +  RF+ +G  +       +  DY H  + +   +K  R     + +V+        R 
Sbjct: 324 GIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGWPDKRLVMAYQPHRYTRT 383

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEA 448
           +       ++     D  ++ +     E P        +   I + G    I   +  + 
Sbjct: 384 RDLYEDFIEVLSQ-VDCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQL 442

Query: 449 IRTAIEMLNKQDVLVVAGKGH 469
                ++L + D+L+  G G+
Sbjct: 443 AEVLPDVLQEGDLLLTQGAGN 463


>gi|313888807|ref|ZP_07822468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845176|gb|EFR32576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 517

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 118/352 (33%), Gaps = 18/352 (5%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +L +TG+ GK+SV      I                +      +   TP  +       
Sbjct: 168 KVLGITGSFGKTSVKFISDTILSE------------GLRVKNTPSSFNTPMGLSKIINNE 215

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
               + V    + A   G      + ++   G  T +G  H+   +T +           
Sbjct: 216 LERDREVFIAELGAKVPGEIHEVAELVQPDIGIITAIGPTHMHLFKTIENIQKT-KYELI 274

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E LP++  AI   D+ Y K +  +      R  +  +    ++  ++       +  + +
Sbjct: 275 EDLPEDGIAIFNYDNDYVKPLADKTKKKTYRYGTKDFDKLDVYADEIKVNETGSEFVLHI 334

Query: 296 EGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G  +      L G   + N L AA     +G+    +   + K+  V  R   + +++ 
Sbjct: 335 KGGGEIKCSTRLLGVHNISNLLAAATAAHVLGLSLEEIQRGISKVEPVEHRLSLIPSSNN 394

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLAD 411
              I   +          L  +R     R I++       GD ++ +   +G++  D+ D
Sbjct: 395 TIVIDDAFNSNPVGFRAALDVLREFKDHRKIIITPGMVELGDMEEEENRKIGQVMADVLD 454

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AI+     R+    +   +            +  EA +   ++    DV++
Sbjct: 455 FAILVGKK-RTLPIYEGLKDKNFDEEKIYRVSSLDEATKVLAKISMAGDVVL 505


>gi|212551067|ref|YP_002309384.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549305|dbj|BAG83973.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 466

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 128/409 (31%), Gaps = 43/409 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V++ A        T   N    +V    + L            +  + + GT GK++ 
Sbjct: 73  LVVITPAIPYDHSEWTFFRNAGFNIVKRA-QLLGEITKN------KKGICIAGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  + ++S             +         T   I +       S           
Sbjct: 126 SSMIAHLLKQSSAGCNAFLGGILKNYNNNLLLSDTSDLIVIEADEYDRSFHW-------- 177

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       +       T++  DH+D + T+++Y  A       +       +    
Sbjct: 178 ------------LSPFMAVITSVDSDHLDVYGTEKSYKEAFEHFTFLIRRGGVLLMREGI 225

Query: 250 D--AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPL 306
           D     +E ++    +G      G      + + V     +      +      D     
Sbjct: 226 DIAPSLQEGVQHYSYSGDISKIRGKNKPDFYAQNVRINSEEIHFDFVAPNTVIKDIQLNE 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           P E  + N++ A  + +   + S  + + +     V  RF+F    +    +  DYAH  
Sbjct: 286 PIEINIVNSVAALAVALLNSVTSEELKQAMASFIGVKRRFDF-HIKTDDLVLIDDYAHHP 344

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             L+  +K++RT+   R + V        R         +    LAD  I+    P  E 
Sbjct: 345 QELKSSIKSVRTLYPNRRLAVIFQPHLYSRTNDFYKEFAQSLS-LADEVILLPIYPAREK 403

Query: 425 P-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P      +I  + +      +   +  E I +  +   K DV++V G G
Sbjct: 404 PIPNVSSQIILDSLTISSKQLVNYD--ELISSVAK--QKMDVVLVIGAG 448


>gi|328950960|ref|YP_004368295.1| UDP-N-acetylmuramate--L-alanine ligase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451284|gb|AEB12185.1| UDP-N-acetylmuramate--L-alanine ligase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 452

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 89/276 (32%), Gaps = 11/276 (3%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +++     TNL  DH+      +  ++       +   + +    +        +++ 
Sbjct: 165 QHLQVNTALLTNLEDDHVAAPGQTRQNYHESFEALIQATRRFAQRAGHVVYNADWPLLEE 224

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 RV      G F       +    +   +       +    + G   V NAL   
Sbjct: 225 VTAGLERVGFGLEHGAFRAEAVDLSPEGSRFRVVWDGTVLGEARLRVLGLHNVMNALGVI 284

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +    G+D   V   L +      RFE VG    G  +  DYAH    +   L+  R  
Sbjct: 285 AVSALEGLDLEAVFAALAEFRGAHRRFERVG-EINGAWVVDDYAHHPTEVAATLQAARA- 342

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEII 433
           T  R+ VVF         +       AL LAD A+V +     E P +      I   + 
Sbjct: 343 TGRRVRVVFQPHRYLRTLQMWERFAEALQLADEAVVLEVYAAGEAPIEGVSGRLIAERLQ 402

Query: 434 H-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             G P    + +  +A     E     D+++  G G
Sbjct: 403 ALGHPARFMEWDEAQA--YLTESARANDLILTMGAG 436


>gi|149010691|ref|ZP_01832062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765172|gb|EDK72101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
          Length = 450

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TASDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH   + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 TSKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|317121201|ref|YP_004101204.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591181|gb|ADU50477.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 564

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 124/423 (29%), Gaps = 64/423 (15%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF---ASRLYGKHPENILAVTGTSGKS 127
           ++    ++    +  ++ + P +     R   +           +    ++ VTG++GK+
Sbjct: 149 VLRERPFATVFLTPGMKKDLPEIRAA--RAAGAQIRGEIDLFLERCRAKVIGVTGSAGKT 206

Query: 128 SVASFVQQICQ--------RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +  S + +  +          G   +  G          D     P  + +         
Sbjct: 207 TTTSLIGEGLRRATAPGGPLEGRPVYVGGNIGRPLIEEVD--RIPPEALVV--------- 255

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +E SS  L+   L         + NL  +H+D H + +AY  AK R+      
Sbjct: 256 -------LELSSFQLE---LCHRAPQVAVYLNLRPNHLDVHGSMEAYAAAKSRIVALQAA 305

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK-------VCAIHNKQQVT 292
           +   A++  DD     +  RA        +     + +  ++       V A +   +  
Sbjct: 306 EGW-AVLNGDDPAPAGLAPRAPGRVAIFAASARVARQLAEQEAGRRGGPVRAAYLAGEHL 364

Query: 293 ISVEGKDFDFLFPLPGE-----FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +G++   +               NAL A       G     + E       V  R E
Sbjct: 365 AVWDGQEERCVLDGRAMVLRGAHNRLNALAAILAGWVAGAPPEAMAEAAAAFRGVEHRLE 424

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V             A   +     L+          +V+   G D+     P+ G    
Sbjct: 425 LVREVDGVRYYNDSIATAPDRTLAALEAFTE-----PVVLIAGGYDKGIPFDPL-GPAVC 478

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDV 461
             A   ++       +    I+  I                G+  EA+  A  +    DV
Sbjct: 479 RRARAVVL-----LGKTAGAIQRVIEEAAAREGRRPVVRRVGSLEEAVAEARRLARPGDV 533

Query: 462 LVV 464
           +++
Sbjct: 534 VLL 536


>gi|237799292|ref|ZP_04587753.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022148|gb|EGI02205.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 486

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 135/422 (31%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPMVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|227494649|ref|ZP_03924965.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831831|gb|EEH64214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 455

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 149/420 (35%), Gaps = 47/420 (11%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A      + +     N P++      + L++ A  L        +AV G  GK++
Sbjct: 65  VVVSTAVRETNPELAFAREHNLPVIHRS---QALAIAAQGLD------FVAVAGAHGKTT 115

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +  +      +G+          ++ F     L                      V+  
Sbjct: 116 TSGMLAAALSAAGMD-PSFAVGGVVAGFGTGAHLGQG----------------RFFVAEA 158

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S G   +            TN+  DH+D++ +++A+  A    F   +  +   ++ A
Sbjct: 159 DESDGSFLNYT----PRVALVTNVEPDHLDHYGSREAFE-AVFDEFVTRITADGALVVCA 213

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQG-----KFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           DD  +  + +R    G RV S G        + + + +V    +     +S   +     
Sbjct: 214 DDPGASALGQRVLATGRRVWSYGLDSSVEGAQHLQISEVELHASGSSFLVSYGDETVAVH 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V NA  A  + + +GI  +++ E L+       RFEF G    G R++ DYA
Sbjct: 274 LNVSGLHNVLNATGALAVALDLGISLSVMAEALKAFTGTGRRFEFKG-EVAGKRLFDDYA 332

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           H  + +   LK  R +     + V+F      R +            LAD  ++ D    
Sbjct: 333 HHPSEVAAALKQARVVVGEGKVVVLFQPHLYSRTRNFAAEFAASLA-LADQVVLADIYGA 391

Query: 422 SEDPEKIR--AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV---HIVT 476
            EDP      A I   +      G    A   A E+    D+ +  G G+ T     I+ 
Sbjct: 392 REDPMPGITSALIGDKLVEVAFVGPLETAAEVAAELTEAGDICITMGAGNVTSVGNQIIN 451


>gi|189183854|ref|YP_001937639.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180625|dbj|BAG40405.1| UDP-N-acetylmuramate-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
          Length = 502

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 123/337 (36%), Gaps = 44/337 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V+SSA    +    A I +  PI+   +  + L+           +  +A++G+
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAISAKIPII---SRAEMLAELMR------SKIAIAISGS 133

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I +  GL    I     +++ A +  L           ++       T
Sbjct: 134 HGKTTTTALIACIFEACGLHPTVI-TGGIMNNKATNAYLGDGD-----YFIAEADESDAT 187

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+                   TN+  +H+D+++      +A  R F   LP +  
Sbjct: 188 FIKIPAT---------------IAVITNIDVEHLDFYKNFDNLISA-FRKFIINLPYDGF 231

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+   DD   + ++ +  +       +  +   I    +   +      + ++  +F   
Sbjct: 232 AVACIDDITVQNLIAKITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNE 291

Query: 304 F-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P  G+  + N+L A  + + + +D  ++ +  +    +  RF  +G      
Sbjct: 292 VIITQVTLPALGKHNILNSLAAIAIAVELNLDLNIIKDGFKNFKGIARRFTKIG-EYNNI 350

Query: 357 RIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGC 390
            +  DYAH    +   +   R I     GR+I VF  
Sbjct: 351 TVIDDYAHHPAEIIATIDIARCIADKQQGRVIAVFQP 387


>gi|307708861|ref|ZP_07645321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
 gi|307620197|gb|EFN99313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
          Length = 450

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALSKGIPVL----TEVELAYLISE------APIVGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TASDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K   +     +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELASKTQATVVPFSTQEKVDGAYLEDGQLYFRGEVVMAANEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDEIKGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 DVSYVDATDIADATRKAYELATQGDVVLL 421


>gi|269960242|ref|ZP_06174617.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
 gi|269835049|gb|EEZ89133.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
          Length = 485

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 146/472 (30%), Gaps = 67/472 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEA 70
           L     I      E  + E     R +  G  +F+        GH    QA  + + A  
Sbjct: 43  LNEGYQITGSDLSENPVTE-----RLVSKGATVFI--------GH----QASNVEK-ASV 84

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + ++          I +V   R+   L+      +G      +AV GT GK++
Sbjct: 85  VVVSTAINEENPEVMAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V QI   +GL    +     + S   + RL +   +      S  S          
Sbjct: 136 TTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------- 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+  DH+D +             F   LP    AI+  
Sbjct: 188 -------------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCI 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   +E++ R                 I          K    +     + D    +PG
Sbjct: 235 DDPVIRELIPRISRQVITYGFADDADVRIENYHQEGQQGKFT-VVREGRANLDITLNIPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHT 365
                NA  A  +     I    +L+ +        RF+ +G    G     +  DY H 
Sbjct: 294 RHNALNASAAIAVATEDDISDEAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHH 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE 423
              +++ +   R+    + +V+        + +        +     D+ I+ D     E
Sbjct: 354 PTEVDVTINAARSGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGE 412

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P        +   I   G    I      +       ++   D+++  G G
Sbjct: 413 KPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGAG 464


>gi|281424945|ref|ZP_06255858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
 gi|281400789|gb|EFB31620.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
          Length = 443

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 108/350 (30%), Gaps = 35/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G      G                   + L    
Sbjct: 102 SKMVCITGSNGKTTTTSLIYHIFKSAGYDVGLAGNIGK--------------SLALQV-- 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SS  LD   +   +       N+  DH+D +  +   +       
Sbjct: 146 ---AEDPHEYYVIELSSFQLD--NMYDFRANIAILLNITPDHLDRYDFKFENYADAKMRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +    E   I + DD     + K       +  +  +                 ++   
Sbjct: 201 IQNQTPEDSFIYWNDDPV---IKKELEKFEIKAYACPFSELKEKGSIGYIEAGTYKLEYP 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  +YN+L A       GI   ++ + L     V  R E V     
Sbjct: 258 TPFNMEQEALSLTGKHNIYNSLAAGLASNIAGIKKEIIRKSLSDFPGVEHRLEKVCKVGG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++    L++++T       V+   G D+     PI   +      +  
Sbjct: 318 VQYINDSKATNVDACWYALESMKT-----PTVLILGGKDKGNDYTPIKELVKKKCRGLVY 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DN +  D          G+P   +  +  + +    EM    D +++
Sbjct: 373 LGADNKKLHDNFDAL-----GLP-VKDTHSMKDCVEACHEMAKSGDTVLL 416


>gi|157363503|ref|YP_001470270.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
 gi|189082509|sp|A8F4X2|MURC_THELT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157314107|gb|ABV33206.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga lettingae TMO]
          Length = 445

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 116/384 (30%), Gaps = 48/384 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVV +     D    IR+ +  + V +  +FL          + +   AVTG+ GK++  
Sbjct: 62  IVVHTPAVHSDNPEIIRARSNGIRVVSRFEFLYDIL-----NNGKTQFAVTGSDGKTTTT 116

Query: 131 SFVQQICQRSGLSSFQI-GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           + +    +  G       G       F        P    L ++    S     ++ +  
Sbjct: 117 AMLAHCLKVLGEDPTVFLGGIHRSLEFGNYRPGKGPYVYELDESQPEFSRFSPDYMIIT- 175

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N   D   Y    ++   +  +            + +++
Sbjct: 176 -------------NARGDHLENYSGDRQLYRDCFRSVVMSTRKS----------VVTFSE 212

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  + ++                      L         Q   I + GK+++    +PGE
Sbjct: 213 DENTSDL--------GTWTFGKSINSTCRLIDRNRNGLFQFAKIEINGKEYNLTLKVPGE 264

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV-GTNSRGGRIYVDYAHTSNS 368
             + NA+    L  + G +   VL+ LE       RF        R   +  DYAHT + 
Sbjct: 265 HNILNAMAVITLLWSAGHEVEEVLKALEDFTGTYRRFTVTVIDEKRKVYMIDDYAHTPDE 324

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE--- 423
           ++ +L   R +   +  VV        +  R   G  A  L  AD   +T+     E   
Sbjct: 325 IKSLLSTTREVFPSQKRVVIFQPHRYSRLMRED-GNFAKALKDADEIYITEVYSAFEQTI 383

Query: 424 ---DPEKIRAEIIHGIPGFIEKGN 444
                + I   ++          +
Sbjct: 384 PQISSKVIADGLVSYGKKAQYVAD 407


>gi|89095258|ref|ZP_01168179.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
 gi|89080465|gb|EAR59716.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
          Length = 482

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 129/409 (31%), Gaps = 45/409 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           S+A + ++          I +V   R+   L+      +G      +AV GT GK++  S
Sbjct: 84  STAVNEENPEVKAAREKRIPIV---RRAEMLAELMRYRHG------IAVAGTHGKTTTTS 134

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  I    G           ++S   + ++ T                       +AS 
Sbjct: 135 LLASIF-AEGELDPTFVIGGRLNSAGTNAKMGT------------SRYLVAEADESDASF 181

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L          +    TN+  DH++ ++   +        F   LP    A++  DD 
Sbjct: 182 LHLQ--------PMVAIVTNIDADHMETYENDFSRLKKTFVEFLHNLPFYGLAVMCVDDP 233

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              E++                       +   +  +  V       D D    +PG   
Sbjct: 234 VVCEILPEISRPVLTYGVSEDADYRAENIRQEGMCTRFTVKRPEGFADLDVSLNMPGHHN 293

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNS 368
           + NAL    +    GI    +   LEK   V  RF+ +G          +  DY H    
Sbjct: 294 MLNALATIAVASDEGISDEAICSALEKFEGVGRRFQVLGDVSVTDGTAMLVDDYGHHPRE 353

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP- 425
           +  ++K IR     + +V+        + +       ++  +  D+ ++ +     E+P 
Sbjct: 354 VNAVVKAIREGWPEKRLVMIYQPHRYSRTRDLYEDFVEVLSE-VDVLLLLEVYAAGEEPV 412

Query: 426 -----EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +   I   G    +   ++        ++L   D+L+  G G
Sbjct: 413 AGADSRSLCRSIRQRGRLDPVFVSDKDSVADVLKDILQPGDLLLTQGAG 461


>gi|312148110|gb|ADQ30769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi JD1]
          Length = 451

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 122/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNGNLIGSFSNSRAVFIIPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILNNFKGIEHRLEFVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|238795099|ref|ZP_04638691.1| Folylpolyglutamate synthase [Yersinia intermedia ATCC 29909]
 gi|238725594|gb|EEQ17156.1| Folylpolyglutamate synthase [Yersinia intermedia ATCC 29909]
          Length = 422

 Score = 58.0 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 69/194 (35%), Gaps = 17/194 (8%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 A  ++Q+ +   +  +  +         + NA  A  +    G+  +  +    
Sbjct: 227 WWFSQQAPFDQQRNSWDWQCGNHQWANLPLPNVPLANAATALAVLHYSGLPLSDEVIRQG 286

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRD 395
            L    PGRF+ V        + +D AH  ++   +   + R    G++  V G   D+D
Sbjct: 287 LLAASLPGRFQVVSEQPL---LILDVAHNPHAARYLTDRLARLPKHGKVRAVVGMLSDKD 343

Query: 396 QGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
            G     G +A   +  D       + PR         ++   +    +  +   A R A
Sbjct: 344 IG-----GTLACLSEQVDEWYCAPLEGPRG----ATAEQLAEHLVLSRQFSDVETAWRQA 394

Query: 453 IEMLNKQDVLVVAG 466
           ++    QDV++V G
Sbjct: 395 MQDAEPQDVVIVCG 408


>gi|319944697|ref|ZP_08018961.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
 gi|319741946|gb|EFV94369.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
          Length = 489

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 147/450 (32%), Gaps = 68/450 (15%)

Query: 51  GNKED-GHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G K   GH    +  A     + +VVS+A    +          + VV      L+    
Sbjct: 50  GAKVHVGHQAEHVEDA-----DCVVVSTAVRADNPEVRRARARRVPVVPRAL-MLAELMK 103

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPS 166
              G      +A+ GT GK++  S V  I  ++G   +F IG    ++S   + RL +  
Sbjct: 104 LKQG------VAIAGTHGKTTTTSLVASILAKAGLDPTFVIG--GRLNSAGVNARLGSGD 155

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            I +    S  S                       +  +  + TN+  DH+D +    A 
Sbjct: 156 YIVVEADESDASFLN--------------------LLPMIAAVTNIDADHMDTYGHDMAR 195

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                  F   LP    A++  DD + +E++    +       +G   +   +       
Sbjct: 196 LKQAFVDFLNRLPFYGSAVLCLDDPHVREIVP-FVSKPTITYGLGEDAQVRAVDVRAEGD 254

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 +       +    L GE  V NAL A  +   +G+ +  ++  L +   V  RF
Sbjct: 255 RMHFQVLRENEPPLEVSLALSGEHNVRNALAAIAIATELGVKAEAIVAALAEFRGVGRRF 314

Query: 347 EFVGTNSRG-------------------GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           E  G                          +  DY H    +E  L+ +R     R  +V
Sbjct: 315 ERYGEVPVPVREGREGAQAGQTAAASGTFTLIDDYGHHPVEIEATLRAVRGAFPTRR-LV 373

Query: 388 FGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP-------EKIRAEIIHGIPG 438
                 R    R +       L +AD  I+T+     E P         +RA  +     
Sbjct: 374 LAFQPHRYSRTRDLFEDFVRVLGMADQLILTEVYAAGEPPIVAADGRALVRAVRLASQRD 433

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   +  E   T + ++   DV++  G G
Sbjct: 434 PLFVADVAELPTTVLGLVQPGDVVITMGAG 463


>gi|255320030|ref|ZP_05361226.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
 gi|255302898|gb|EET82119.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter radioresistens
           SK82]
          Length = 482

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 120/377 (31%), Gaps = 43/377 (11%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHP 114
           FI  A    + A  +VVS+A   ++          I VV   R+   L       +G   
Sbjct: 71  FIGHAADNIKNASVLVVSTAIDPENPEVKAAIEQRIPVV---RRAEMLGELMRYRHG--- 124

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  S +  +    G+    +     ++    +  L            
Sbjct: 125 ---IAVAGTHGKTTTTSLLTCMLAEEGMDPTYV-IGGLLNRTGVNAALG----------- 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                        +AS   L+         +A   TN+  DH+D +             F
Sbjct: 170 -ASRYIVAEADESDASFLHLE--------PMAAIVTNIDADHMDTYGGSFDVLKDTFIQF 220

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DDA  +E+M R                      V     +   T+ 
Sbjct: 221 LHKLPFYGLAVVCGDDANIREIMPRIARPLLTYGFNPDNDI--RAVDVEQDGMRSHFTVL 278

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
            + ++        PG   V NAL A G+    G+  A +   LE    V  RF+  G   
Sbjct: 279 RKDREPLRLTINQPGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFG 338

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
                 ++  DY H    +E  +K  R     R +V+        + +        +   
Sbjct: 339 LEQGTVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMMFQPHRFSRTRDCFDDFVDVLSQ 398

Query: 409 LADIAIVTDDNPRSEDP 425
             D  ++ +  P  E P
Sbjct: 399 -VDQLLLLEVYPAGEKP 414


>gi|226321051|ref|ZP_03796594.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 29805]
 gi|226233575|gb|EEH32313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 29805]
          Length = 451

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 123/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +A        +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKARVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNDSLIGSFSNSRAVFIVPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILNNFKGIEHRLEFVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|73542270|ref|YP_296790.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119683|gb|AAZ61946.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 878

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 14/163 (8%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLH----VVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           N L A     A+GI + L+   +         VPGRF        G  + VD AH + +L
Sbjct: 693 NVLAAVATGWALGISNDLIRAGIVTFDVGQVDVPGRFTL--FERNGATVIVDDAHNAPAL 750

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN------PRSE 423
           E +   +    + R ++V+G G  R        GK+     D   + +D       P +E
Sbjct: 751 EALATALDRFPAERRMIVYGAGVQRRDEDMVRQGKVIGATFDRVFLCEDRSVKGALPDAE 810

Query: 424 DPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               ++  +  G  +   I++G R +AI TA+  L   D+LV+
Sbjct: 811 ARALLKQGLYEGRRVTKIIDEGTRQDAIETALGQLVAGDLLVL 853


>gi|220927180|ref|YP_002502482.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium nodulans
           ORS 2060]
 gi|254766011|sp|B8IN63|MURC_METNO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219951787|gb|ACL62179.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium nodulans ORS
           2060]
          Length = 471

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 141/419 (33%), Gaps = 51/419 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           AE +VVS+A    +    +     + VV   R+   L+           ++ +AV GT G
Sbjct: 67  AELVVVSTAIRRDNPELALARERRLPVV---RRAEMLAELMRF------KSCVAVAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL    I     I+++  + R+     + +    S          
Sbjct: 118 KTTTTSLVATLLDAGGLDPTVI-NGGIINAYGTNARMGEGDWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+  +  A  +A  R F + +P    A+
Sbjct: 168 -----------GTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDA-FRAFIDNIPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEGKD 299
           +  D    ++++ R  +          Q     +       +       +        + 
Sbjct: 216 MCIDHPTVQDLVGRIEDRRIVTYGENPQADVRLIDVDLKGGQSRFRVMIRDRRPGFRLEM 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG+    NA  A  +   +G+    +   L     V  RF   G    G +I+
Sbjct: 276 EDLVLPMPGKHNALNATAALAVAHELGVSPEAIRRALAGFGGVKRRFTRTG-EWNGAQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    ++ +LK  R  T GR++ V      R      +          AD  IV  
Sbjct: 335 DDYGHHPVEIKAVLKAARASTEGRVVAVV--QPHRYTRLASLFDDFCTCFNDADTVIVAP 392

Query: 418 DNPRSEDPEKI--RAEIIHGIP----GFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
                E P +   R  ++ G+            R E +   I  +    D +V  G G+
Sbjct: 393 VYAAGEAPIEGFDRDALVAGLKSRGHRNAVALERSEDLAAMISGLAGPGDYVVCLGAGN 451


>gi|317401778|gb|EFV82394.1| cyanphycin synthetase [Achromobacter xylosoxidans C54]
          Length = 856

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 129/371 (34%), Gaps = 28/371 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++       I   +G      G T++   +  + R+ T        A S L
Sbjct: 473 VAVAGTNGKTTTVRLTAHILGTAGNRV---GMTNSDGVYVDNLRIDTGDCSGPRSARSVL 529

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFE 235
               V     E +  G+ +  L   +      TN+G        + +         R+  
Sbjct: 530 MHPDVDAAVFETARGGILREGLAFDRCNVAIVTNIGMGDHLGLGYISTVEDLAVVKRVIV 589

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTI 293
           + +     A++ A D    E+      +                  + +  ++      +
Sbjct: 590 QHVHPSGTAVLNAADPIVAEMASSCPGSITYFAEDRNHPVMATHRAQGLRVVYRDGDAIV 649

Query: 294 SVEGKD--------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV--- 342
           + +G +                  FQV NA+ +     A+G+D ++V   L         
Sbjct: 650 AAQGGEETRFPLAEIPLTRNGTIVFQVENAMASIAAAWALGLDWSIVRRGLATFVNDAQT 709

Query: 343 -PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRF     + RG  +  DY H  +++  +++ +  + + R  VV    GDR      +
Sbjct: 710 APGRFNV--FDYRGATVIADYGHNPDAILALVRAVDAMPAKRRSVVISGAGDRRDEDIRM 767

Query: 402 MGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIE 454
             +I  +  D  ++  D   R     ++ A +  G+          E      AI TA+ 
Sbjct: 768 QTEILGEAFDDVLLYQDQCQRGRADGEVLALLQQGLVNASRTRHIEEIHGEFLAIDTALA 827

Query: 455 MLNKQDVLVVA 465
            LN  D+ ++ 
Sbjct: 828 RLNAGDLCLIL 838


>gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
 gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
          Length = 467

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 124/362 (34%), Gaps = 35/362 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+R        I+A TGT+GK++V SF+ ++ +  GL+ F  G   T           
Sbjct: 111 ELAARHVDVP---IIAATGTNGKTTVTSFLGRMLEDQGLAVFVGGNIGTP---------- 157

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        +      ++ VE SS  LD   ++          N+  DH+D +   
Sbjct: 158 --------LTAYLMGEMKADYLVVEISSFQLDT--IERFTPEISIILNISPDHLDRYADY 207

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY ++K+R+FE     ++  +    +     + K     G  VL  G +          
Sbjct: 208 SAYIHSKLRIFENQGAGQTVIL----NDDDIVLKKTTPPEGTSVLRYGLKKG--AGIDAF 261

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +      ++ +G+     F LPG   + N L       A+G+    + + +     + 
Sbjct: 262 IENEGILSAVTEKGRFNLSAFSLPGAHNLENLLAVVLAGQALGLAPEPIQKTINAFKGLS 321

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V  N  G        +  +    +   +R + S    ++   GG         + 
Sbjct: 322 NRLERVCANGHGFLQKKVQFYNDSKATNVDAAVRAVQSFDKPLILIAGGRHKGSNYQPLV 381

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A+         +   + AE   G   F       +A++ A  M    DV++
Sbjct: 382 NACKGHVKGAVF------MGESASLLAEAFTGETPFSLAETMPDAVKKAAHMAESGDVVL 435

Query: 464 VA 465
           +A
Sbjct: 436 LA 437


>gi|23098924|ref|NP_692390.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Oceanobacillus iheyensis HTE831]
 gi|30316035|sp|Q8ER50|MURD_OCEIH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22777152|dbj|BAC13425.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oceanobacillus
           iheyensis HTE831]
          Length = 449

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 134/410 (32%), Gaps = 56/410 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASRLYGKHPE 115
           GAE ++ S   S+ D    I  N P +  DN     +                L  +   
Sbjct: 56  GAELVLGSHPISVLDGKDLIVKN-PGIRYDNVIVEEAQRRGIPVISEVELVHYLTNQP-- 112

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ +TG++GK++  + + ++  RS +S    G    +++              L     
Sbjct: 113 -VIGITGSNGKTTTTTLITEMLDRSNVSVKVAGNIGVVATEV---------ASSLQSDEK 162

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + +E SS  L    +D ++       NL   H+DYH + + Y  AK  +F+
Sbjct: 163 ---------MVMELSSFQLQ--GIDQLQFSTAVLLNLFEAHLDYHGSFENYVEAKCNIFK 211

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +       DD  S  +            S                 +++ + I  
Sbjct: 212 SQNKHDYLIYNADDDNVSAAIKTAEATKVPFSSSRPLADGAWMDDDFLYYKDEKIIAIRD 271

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L G+  + N L A       G  +  +++ L     V  R EFVG  +  
Sbjct: 272 IV--------LVGKHNMENILAAIATAKLNGATNEGIVQVLTTFSGVKHRLEFVGVINGR 323

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
                  A    + +  L         + +V+   G DR      ++  +    A +   
Sbjct: 324 YIYNDSKATNILATKKALAAF-----NKNVVLLAGGLDRGNTFEELIPYLHHVKAMVVF- 377

Query: 416 TDDNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E   K++   +   IP   +  +   A+  A  + ++QD +++
Sbjct: 378 ------GETAGKLKDAGVAANIPVIEKALDVQHAVEVAFALTDEQDTILL 421


>gi|332669998|ref|YP_004453006.1| FolC bifunctional protein [Cellulomonas fimi ATCC 484]
 gi|332339036|gb|AEE45619.1| FolC bifunctional protein [Cellulomonas fimi ATCC 484]
          Length = 463

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 12/131 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V ++     + VD AH    +E ++  +       R++ V G   D+D      
Sbjct: 323 PGRLEVVRSSPT---VLVDGAHNPAGVEALVAALDEAFAFQRVVGVVGVMADKDPEGILA 379

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEML--- 456
           + +    LA++ +    NPR+ DP+ +    +   G           EAI  A       
Sbjct: 380 LLEPV--LAEVVVTRASNPRALDPQDLAEVAVDVFGEDRVHVVERLDEAIDLAAARAEGE 437

Query: 457 -NKQDVLVVAG 466
             +   ++V G
Sbjct: 438 VERGGAVLVTG 448


>gi|325269658|ref|ZP_08136271.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella multiformis DSM
           16608]
 gi|324988026|gb|EGC19996.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella multiformis DSM
           16608]
          Length = 458

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 119/382 (31%), Gaps = 52/382 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              L   GT GK++ ++    I  +S    ++F  G +    +    +  +    I   +
Sbjct: 112 HKGLCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILSAHSDFVVIEADE 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                                        ++      T+   DH+D + T++AY  +   
Sbjct: 172 FDRSFHW----------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             E +    +  I    +      MK+    G +V      G   H   V          
Sbjct: 210 YTELIQKGGALIIHKGLE------MKQHVQEGVKVYEYSRDGGDFHAGNVRIADGTITFD 263

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                ++        P    + N + A  +    G  +  +   ++    V  RF+F   
Sbjct: 264 FLSPIENVRDVELGQPIPINIENGIAAMAMAQLNGCTAEELRNGMKTYGGVDRRFDF-KI 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
                    DYAH    +    K+++ + + R + V        R +       + AL  
Sbjct: 323 KDSRHVFLSDYAHHPKEILQSAKSLKELYADRKVTVIFQPHLYSRTRDFYKDFAE-ALSH 381

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+T+  P  E P        I   +   I    I K + ++ +R         DVL
Sbjct: 382 FDEVILTEIYPAREQPIPGVTSRLIYDNLRPDIEKQMIRKEDVLDFVR-----SRDFDVL 436

Query: 463 VVAGKGH-ETVH----IVTNGE 479
           VV G G+ +        + NG+
Sbjct: 437 VVLGAGNLDNYVPRITEILNGK 458


>gi|195941718|ref|ZP_03087100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi 80a]
          Length = 451

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 122/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYYKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNDNLIGSFSNSRAVFIIPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILNNFKSIEHRLEFVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|54309811|ref|YP_130831.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Photobacterium profundum SS9]
 gi|46914249|emb|CAG21029.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Photobacterium profundum SS9]
          Length = 426

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 109/390 (27%), Gaps = 40/390 (10%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +  ++       K  E ++ V GT+GK S  + ++ I   +G           I    + 
Sbjct: 39  RAFAVAQKEQLIKPAERVITVAGTNGKGSTCAILEAILIDAGYKVGVYSSPHLIRYNERV 98

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                     L  +    +   +     + S    +   L  + L      ++    +  
Sbjct: 99  RINGQ----ELDDSYHSAAFAHIEQARGDVSLSLFEFGTLAALHLFKQQRVDVVILEVGL 154

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-- 277
                A       +               DD       K       +    G        
Sbjct: 155 GGRLDATNIVDHDVSVITSLAVDHVDWLGDDIEVIGFEKAGIFRSEKPAICGQPNPPASV 214

Query: 278 --HLKKVCAIHNKQQVTISVEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAI 325
             H   + A   +     S E +   + +            P       A     L  A 
Sbjct: 215 PAHADDIGAELYQVGYQFSYEQQGDTWSWNCGAFDLTGLPIPALPLPNAATALMALGTAE 274

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--- 382
              S   +        +PGR E V  +     + +D AH  ++ E +   +  +      
Sbjct: 275 LEVSDENIVAGLSKVSLPGRMERVSESPL---VLMDVAHNPHAAEYLSSQLTQLKVRENK 331

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-----DNPRSEDPEKIRAEIIHGI 436
            RI  V     D+D      +     ++    + T      + PR+E  ++I + +   +
Sbjct: 332 TRIHAVVAMLHDKD------IAATINEM-KGIVDTWYPASLEGPRAEKADEIISHLSIDV 384

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            GF    +   A   A+      DV++V G
Sbjct: 385 TGF---ASPELAFDAALTQAAPDDVVIVFG 411


>gi|261206518|ref|ZP_05921218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289565428|ref|ZP_06445877.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|294614711|ref|ZP_06694613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|294618991|ref|ZP_06698486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
 gi|260079228|gb|EEW66919.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289162757|gb|EFD10608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|291592449|gb|EFF24056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|291594652|gb|EFF26034.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
          Length = 453

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 22/279 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TN+   HIDYH T++ Y  AK  L + +  K+   + 
Sbjct: 168 MELSSFQL--MGITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + + +R         +       ++       + K+++    E         +
Sbjct: 226 WNQSELQE-LAQRTKARVLPFSTKEVLEDGVYADDYSIYYKKEKIMEISELG-------V 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A  +    GI +  + E L   H VP R ++VG            A   
Sbjct: 278 PGKHNVENALAAISVAKLYGISNEAIRETLHFFHGVPHRTQYVGEIQGRKFYNDSKATN- 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + + +V+   G DR      ++  +    A +          +  E
Sbjct: 337 --ILATKMALSGFETTK-VVLLAGGLDRGNTFDELIPSLKGIKAMVVF-------GQTKE 386

Query: 427 KIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+       GI   +   +  +A+  A+E     DV+++
Sbjct: 387 KLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVVLL 425


>gi|153843974|ref|ZP_01993609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|149745274|gb|EDM56525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
          Length = 266

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               +  +     PL GEF   N ++A    +++G D + +L    +L  V GR E    
Sbjct: 161 RFDGQFGEGTLHAPLIGEFNAANLMLAFATLLSLGFDKSDLLATAAQLQPVLGRMELFQA 220

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             R  ++ VDYAHT ++LE  L+ +R    G++  +FGCGGDRD GK
Sbjct: 221 EHR-AKVVVDYAHTPDALEKALQALRVHCDGQLWAIFGCGGDRDAGK 266


>gi|146312506|ref|YP_001177580.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Enterobacter sp. 638]
 gi|145319382|gb|ABP61529.1| FolC bifunctional protein [Enterobacter sp. 638]
          Length = 422

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 120/387 (31%), Gaps = 35/387 (9%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  ASRL+   P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVASRLHVLKPAPFVFTVAGTNGKGTTCRTLESMLMAAGYKVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +     T  P     A           +S+       +   L  + L   +  ++    +
Sbjct: 92  RVRIQNTELPESAHTASFAEIEAARGEISLSY----FEYGTLSALWLFKQAKLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNMVDADVSVVTSIALDHIDWLGPDRESIGREKAGIFRANKPAVVGEPDMPH 207

Query: 278 HLKKVCA--------IHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCI 323
            +  V               Q  ++     F          P P   Q   A   A +  
Sbjct: 208 TIADVAQEKGALLLRRGVDWQYDVTENDWRFIDAQGVLEHLPFPHVPQPNAATALAAIRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +    S   +    +  ++PGRF+ V  + R   + +D AH  ++   + + ++++  +G
Sbjct: 268 SGLNVSEQAIRDGIQNAMLPGRFQIVSESPR---LILDVAHNPHAAGYLAERLKSLPKNG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD-DNPRSEDPEKIRAEIIHGIPGF 439
           R++ V G   D+D G     G +A   +  D       + PR    E++   I  G    
Sbjct: 325 RVLAVIGMLHDKDIG-----GTLACMESVVDCWYCAPLEGPRGATAEQLMEHISAGTA-- 377

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               +  +A   A+     +D ++V G
Sbjct: 378 --YESVAQAWHAAMADAKPEDTVLVCG 402


>gi|302384555|ref|YP_003820377.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
 gi|302195183|gb|ADL02754.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
          Length = 459

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 144/427 (33%), Gaps = 47/427 (11%)

Query: 64  IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           I +G + +V ++A      +++       PIL   +  + L            EN +AV+
Sbjct: 66  IKEGIDVVVYTAAVHPDNPEYAEAKEKGLPIL---SRAELLGQMMKNY-----ENSIAVS 117

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S + +I   +      I     ++S   + R+  P             ++ 
Sbjct: 118 GTHGKTTTTSMITEILLAAEAD-PTISVGGILNSIGGNIRVGGPG---------LFVTEA 167

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             + +   S                    N+  DH+D+ +  +   ++  RLF E LP  
Sbjct: 168 CEYTNSFLS-----------FFPTMEVILNIEADHLDFFKDIKDIRHS-FRLFAEKLPPN 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              +I  D    +E+ +                      +                    
Sbjct: 216 GSLVINNDIESREEITEGLPCQVITYGKKPGSRYQAEAIRFDEYARATYDLKLDGNVVDT 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PGE  VYN+L AA +C  +GI+  L+ + L++      RFE  G    G  I  D
Sbjct: 276 VTLGVPGEHNVYNSLAAAAVCTELGIEFDLIKKGLKRFTGTNRRFEKKG-ELSGVTIIDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    +   L+  +     ++ V F      R +         AL LAD  I+ D   
Sbjct: 335 YAHHPQEIRATLETAKHYPHNKLWVAFQPHTYTRTKAFLEEFAD-ALSLADEVILADIYA 393

Query: 421 RSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKGHETVH 473
             E          I   I           +  E I T  +E     D+L+  G G     
Sbjct: 394 ARETDDLGISSGDIAERIGKRGVKAHYFSSFDE-IETFILENCIHGDLLITMGAGD---- 448

Query: 474 IVTNGEK 480
           IV  GEK
Sbjct: 449 IVKVGEK 455


>gi|113955473|ref|YP_731457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9311]
 gi|113882824|gb|ABI47782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9311]
          Length = 466

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 116/354 (32%), Gaps = 33/354 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A           + +TGT+GK++V   +  +  ++GL +   G              
Sbjct: 98  GEMAVAWQALCKCPWIGITGTNGKTTVTHLLHHVLNQAGLYAPMAGNVGD---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   L       +      + +E SS+ ++      ++   G +T L  DH++ H +
Sbjct: 148 ---SAAELGLQCMDPAQTKPDWIVMEMSSYQIES--AIEVRPTIGIWTTLTPDHLERHGS 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 A   + + LL +   A++ ADDA     ++  H        +           +
Sbjct: 203 MD----AYRDIKKGLLQRSEHAVLNADDAD----LQSRHADWPDAQWISSAQNKCEPSNL 254

Query: 283 CAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               N +    S +G  F      + GE    N L+     +  G+++  +   L     
Sbjct: 255 ELWINPEGFVCSKKGALFPANALAMLGEHNRQNMLLVTAAALQTGLEAQAIERGLRSFPG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R E +G+           A   ++  + L+ + +      I +   G  +       
Sbjct: 315 VPHRLESLGSLHGMNVFNDSKATNYDAAAVALQAVPS-----PIALLAGGLSKQGDASGW 369

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           +  +   +  IA+   D  R      IR     G           +A+  AIE 
Sbjct: 370 LQLLHDKVCSIALFGSD--RDILLGLIRNSGYTG--DVTSHPTMADAVAAAIEQ 419


>gi|114562573|ref|YP_750086.1| FolC bifunctional protein [Shewanella frigidimarina NCIMB 400]
 gi|114333866|gb|ABI71248.1| FolC bifunctional protein [Shewanella frigidimarina NCIMB 400]
          Length = 425

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 118/369 (31%), Gaps = 22/369 (5%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPIYL 170
           P  ++ V GT+GK +  + +  I +++GLS         +    +   + +  +   +  
Sbjct: 52  PAKVITVAGTNGKGTTCAMLASILRQAGLSVGVYSSPHLLHYNERVQINQQDASDDALIE 111

Query: 171 AKALSYLSSQGVTHVSVEASS-HGLDQHRLDGIKLI--------AGSFTNLGRDHIDYHQ 221
           A      +   ++    E ++  GL   +   + +I            TN+         
Sbjct: 112 AFCAIEAARGDISLTFFEYATLAGLYLFKAAKVDVIILEVGLGGRLDATNIIDSTATILT 171

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +        +      L     A ++  D  +         +     +  +   +    +
Sbjct: 172 SIDLDHQEYL-GDTRELVGREKAGVFRPDCVAIIGEPDLPLSITEYANQLHTTLYRVGHE 230

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                N+ Q  +            L           +    ++            + L  
Sbjct: 231 FNYHKNQTQPALWHFESARQSYTGLTVPRLPLANAASVVALLSHIWPQISQQHINQGLQQ 290

Query: 342 V--PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
               GR E V        + +D AH  +++  + + ++     RI+ + G   D+D    
Sbjct: 291 AQLAGRLEQVSQQPL---VLLDVAHNPHAVRYLAQQLQAYQGRRIVALCGMLKDKDIK-- 345

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLN 457
            ++  +A  ++   +V+ DNPR    + +R  + +        E  +   A +     +N
Sbjct: 346 SVLATLAEQISHWNLVSLDNPRGASAQALRQALPNDGSCEHVSEFADIASAWQAIQATVN 405

Query: 458 KQDVLVVAG 466
             DV++V G
Sbjct: 406 ADDVVIVFG 414


>gi|329964558|ref|ZP_08301612.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
 gi|328524958|gb|EGF52010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
          Length = 466

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 119/363 (32%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G   +           
Sbjct: 116 EFAGRYTD---AKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGS----------- 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +++   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 162 ---SLALQV-----ATEKHDYYIIELSSFQLD--NMYKFRANIAVLMNITPDHLDRYDHC 211

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    +   I + DD     + +     G +     +           
Sbjct: 212 MQNYVDAKFRITQNQTPDDAFIYWNDDPI---IKRELAKHGLKAHLYPFAAVKKDGVIAY 268

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI    + + L     V 
Sbjct: 269 VEDGEVEINEPIAFNMEQEELALRGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVE 328

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IM 402
            R E V T      I    A   NS    L+++ T    + +++    G +D+G     +
Sbjct: 329 HRLEKVATVRGVQFINDSKATNVNSCWYALQSMTT----KTVLIL---GGKDKGNDYTEI 381

Query: 403 GKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             +       +  +   N   E   +    +  G+P    +    +A+  A  +  K + 
Sbjct: 382 EDLVRKNCSGLVYLGLHN---EKLHEFFDRM--GLPVADVQTGMKDAVDAAFRLAKKGET 436

Query: 462 LVV 464
           +++
Sbjct: 437 VLL 439


>gi|331266779|ref|YP_004326409.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
 gi|326683451|emb|CBZ01069.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
          Length = 450

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 139/427 (32%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         +  G + +       L D    +    P +   N    K L+   
Sbjct: 38  NDGKPFEENPAAQSLLEDGIKVVTGGHPLELLDEDFALMVKNPGIPYSNPMIEKALAKGI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++   +G      G     +S  
Sbjct: 98  PVLTEVELAYLISDAP---IIGITGSNGKTTTTTMIGEVLTAAGQRGLLSGNIGYPASQV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                               ++     + +E SS  L    +          TNL   HI
Sbjct: 155 ------------------AQTATAQDTLVMELSSFQL--MGVQEFHPEIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH + + Y  AK  +  ++   +   + +  D     + K         +      + +
Sbjct: 195 DYHGSFEEYVAAKWNIQNKMTADDFLVLNFNQD-----LAKELATKTQATVVPFSTLEKV 249

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +       +  + +   +      +PG   V NAL    +    G+D+ ++ E L 
Sbjct: 250 DGAYLEDGQLYFRGEVVMAADEI----GVPGSHNVENALATIAVAKLRGVDNQIIKEILS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FV             +     +    K +    + ++I++   G DR   
Sbjct: 306 AFGGVKHRLQFVDEIKGVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I   L  + I+       +  E+++         +++  +  +A R A E+  
Sbjct: 362 FDELVPDITG-LKKMVIL------GQSAERVKRAAEKAGVTYVDATDIADATRKAYELAT 414

Query: 458 KQDVLVV 464
           + DV+++
Sbjct: 415 QGDVVLL 421


>gi|325856498|ref|ZP_08172187.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola CRIS 18C-A]
 gi|325483467|gb|EGC86440.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola CRIS 18C-A]
          Length = 458

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 118/367 (32%), Gaps = 47/367 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              L   GT GK++ ++    I  +S    ++F  G +    +    +  +    I   +
Sbjct: 112 HKGLCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILSDRSDFVVIEADE 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                                        ++      T+   DH+D + T++AY  +   
Sbjct: 172 FDRSFHW----------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             E +    +  +    +      MK+    G +V          H + V          
Sbjct: 210 YTELIQKGGALILHKGLE------MKQHVQEGVKVYEYSRNDGDFHAENVRIADGTITFD 263

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                ++        P    + N + A  +    G  +  +   ++    V  RF+F   
Sbjct: 264 FISPIENVKDVELGQPIPINIENGIAAMAMAQLNGCTANELRRGMKTYGGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
           NSR      DYAH    +    K+++ +   R + V        R +         AL  
Sbjct: 324 NSR-HVFLSDYAHHPKEILQSAKSLKELYPDRKVTVIFQPHLYSRTRDFYKDFAG-ALSH 381

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+T+  P  E+P        I   +  G+    I+K + ++ +R         DVL
Sbjct: 382 FDEVILTEIYPAREEPIPGVTSSLIYDNLRPGVEKQMIKKDDVLDFVR-----SRDFDVL 436

Query: 463 VVAGKGH 469
           VV G G+
Sbjct: 437 VVLGAGN 443


>gi|257483446|ref|ZP_05637487.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330987135|gb|EGH85238.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011578|gb|EGH91634.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 486

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 136/422 (32%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++ +                   +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPQVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|251798403|ref|YP_003013134.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
 gi|247546029|gb|ACT03048.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
          Length = 462

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 136/417 (32%), Gaps = 47/417 (11%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ +V S+A S  +    A    N P+L      + L+   +          +AV G 
Sbjct: 62  KGADLVVYSTALSKDNVERMAAEELNIPVLHRA---QMLARLMNA------GKGVAVAGA 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ +S +  + ++                 A    +     + +         + V 
Sbjct: 113 HGKTTTSSMIALVMEKC---------------DADPTYIIGGEIVNVGTNAKAGKGEYVV 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             + E+    L  H    I       TN+  DH++ +        A    F   + +   
Sbjct: 158 AEADESDGSFLQYHPSIAI------VTNIEPDHLENYDGDFGKLKAAYVKFLSQVKENGK 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCR--VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           AI+ ADD    E++ +         +            + +     K    ++  G    
Sbjct: 212 AIVCADDETITELLPKLDADTASKLITYGIDSDSEYKAENISLGDRKVSFEMTHRGTTLG 271

Query: 302 F-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   VYNA+     C+  G+    + + + +      RF+ +G       +  
Sbjct: 272 TLELSVPGRHNVYNAMATVITCLEAGLSFDNIAKAIHEFIGAKRRFQVLG-EVNDILVID 330

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD- 418
           DYAH    ++  +   +  T  RII VF      R         + A   AD  I+TD  
Sbjct: 331 DYAHHPTEIQATISAAKA-TGKRIIAVFQPQRYTRTFFLLEQFSR-AFPEADEVIITDIY 388

Query: 419 NPRSED------PEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +P  E         K+   I             + E +      +   D+++  G G
Sbjct: 389 SPAGEQQIEGVHSRKLVEMIKTNSNANTSYIPTKEEVLVHLTAKVAPGDLVITMGAG 445


>gi|259419223|ref|ZP_05743140.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345445|gb|EEW57299.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 469

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 98/314 (31%), Gaps = 22/314 (7%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +    S         + VEA       +RL          TN+  +H+++        + 
Sbjct: 148 IHAYGSNARMGQGEWMVVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGDFDRLRD- 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    A+   D A  + ++ R  +          Q     +          
Sbjct: 204 GFYEFVSNIPFYGLAVCCTDHAEVQALVGRISDRRVVTYGFNAQADVRAVNLTYKGGVAH 263

Query: 290 QVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +  +   K      P+PG+  V NAL A  +C  +G+    +   L     V  RF 
Sbjct: 264 FDILLQAEGQKIEGCTLPMPGDHNVSNALSAVAVCRHLGMKLDEIRAALAAFGGVNRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMG 403
            VG    G  I  DY H    +  +LK  R        GR+I V      R      +  
Sbjct: 324 KVG-EVDGVTIIDDYGHHPVEIAAVLKAARQAIGSEGEGRVIAV--HQPHRYSRLSSLFD 380

Query: 404 KIALDL--ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                   AD+  + +     EDP +       +   I HG        N  + +R   E
Sbjct: 381 DFCACFNDADVVAIAEVFAAGEDPIEGASRDDLVAGLIRHGHRHARAILNEDDLLRLVRE 440

Query: 455 MLNKQDVLVVAGKG 468
                D++V  G G
Sbjct: 441 QARPGDMVVCLGAG 454


>gi|239917860|ref|YP_002957418.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus NCTC
           2665]
 gi|239839067|gb|ACS30864.1| UDP-N-acetylmuramate--L-alanine ligase [Micrococcus luteus NCTC
           2665]
          Length = 495

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 11/151 (7%)

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +     +  +E       RFEF G    G R++ DYAH    +   +   R + +   + 
Sbjct: 323 MAFEAAVRGVEAFRGTARRFEFRGAAR-GVRVFDDYAHHPTEVAAAVSAGRAVAADARVH 381

Query: 387 VFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE------KIRAEIIHGI-P 437
           V        R +         AL  AD   V       E+P        I + +  G   
Sbjct: 382 VLFQPHLFSRTRDFAAEFA-AALSGADAVRVLPVYAAREEPMPGVDSSLIASRLTTGAAE 440

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   +R EA+R+        DV++  G G
Sbjct: 441 DRVVAEDRAEAVRSLAAGATAGDVVLTMGAG 471


>gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 464

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 115/348 (33%), Gaps = 34/348 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N + VTGT+GK++V  ++    + + +  +  G   T  S    + +T            
Sbjct: 116 NTIGVTGTNGKTTVTEWIGYGFEVAKMPYYVAGNVGTPLSEIIYDIVT------------ 163

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                  +++ +E SS+ ++      +K      TNL  DHID +     YFNAK+ LF+
Sbjct: 164 ------GSNLVLELSSYQIENS--IFLKPKIAMITNLTLDHIDRYANLDEYFNAKVHLFK 215

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                 S      DD Y ++ +K        +     +     +  V       +  +  
Sbjct: 216 NQENGYSI--YNKDDPYLEKNIKNLTLKTKILNVSKRKDF--SIAGVIENKIFVKDNLDF 271

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L GE  + NAL  A       ++   + + L     V  R E   T+   
Sbjct: 272 VKIIDLSDLSLKGEHNIENALFVASSLYLSSVEPKHIEKALSTFSGVEHRQERFYTHKGI 331

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    +    S  + LK           ++   GG         +  +A       I+
Sbjct: 332 TWINDSKSTNPESTIVALKTWGE----NNNLILILGGKDKNTPLDELVSLASKTCKAIIL 387

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                   + +K   +     P      +  + I  A E+    D+++
Sbjct: 388 ------FGEAKKRFFDHFKSFPNLFVLNSLDDVIDKAFELAKPNDIVL 429


>gi|326388916|ref|ZP_08210498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206516|gb|EGD57351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 452

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/405 (15%), Positives = 103/405 (25%), Gaps = 73/405 (18%)

Query: 67  GAEAIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G   +VVS    L              P++   +      LFA+      P  ++ +TGT
Sbjct: 64  GFAGVVVSPGVPLNRHPITAHAAAHGVPVIG--DIE----LFAAIRPELPPHRVVGITGT 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + V  IC+ +G  +   G                             +     
Sbjct: 118 NGKSTTTALVHHICREAGFPARMGGNIGLPVLG-------------------EEALPAGG 158

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS+ +D      ++    +  N+  DH+D +     Y  +K RLF    P +  
Sbjct: 159 VYVLELSSYQIDL--TYSLEADVAALINISPDHLDRYDGFAGYAASKARLFAMQRPDQHA 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                D          AH    R +                                   
Sbjct: 217 VFGTGDADTGAIADAVAHVREARFVHRPDPALLSGQAD-------------WPSLQGPHN 263

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                        +             +    L     +P R E V        +    A
Sbjct: 264 LQNAAIAVAIAEALGIAEA--------VWRPALASFVGLPHRMERVVEVDGVLFVNDSKA 315

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI----VTDDN 419
               S    L     I     I      GD                 D  +    + +  
Sbjct: 316 TNPASTAPALAAYPRIHW---ICGGVPKGDDLDD--------CAPWFDHVVEAYTIGEAG 364

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           PR        AEI+             +A+R A+      DV+++
Sbjct: 365 PRF-------AEILRDHVPVRRSEMLCDAVRDAMAAAKPGDVVML 402


>gi|256545187|ref|ZP_05472553.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399228|gb|EEU12839.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 463

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/402 (14%), Positives = 123/402 (30%), Gaps = 42/402 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A + ++  A  + + P++   +   FL            +N +AV+G+ GKS+  S + +
Sbjct: 81  AENNEELVAARKLDIPVV---SRGVFLGGLMKNY-----KNSIAVSGSHGKSTTTSMISK 132

Query: 136 I-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I    +   +  +G    +     +  +     +                          
Sbjct: 133 ILMNSTKNPTILLG--GDLDEIEGNVHVGDKDILVTEACEYK------------------ 172

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +       G   N+  DH+DY++                       +   ++    
Sbjct: 173 --GNIRYYYPSIGIILNIDEDHLDYYKDINDIVETFKFYLRNQSKDSKTILNLNEENNKL 230

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +                                +   I   G    F   + G   + N
Sbjct: 231 VIDAVQGELITYGQDNPDADYNATNISFDESGKPRFDLIMKNGDVEHFELAILGRHNINN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  +    +  G+D   + ++++    +  R + +G N     I +DY H  + +++ L 
Sbjct: 291 ACASIIATLESGVDIKTIKKNIQSYTGLERRMQLMG-NVNDCNIILDYGHHPSEIQVNLN 349

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE--DP----E 426
            +   T GR+I V+       + KR +  +       AD  I+TD     E  DP    +
Sbjct: 350 ALAEHTKGRLICVW-QPHTYTRTKR-LFNEFVKCFDEADEVIITDIFAAREPFDPSISSK 407

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   +I             +     +  + K D ++V G G
Sbjct: 408 DVVDALIKTGKSAKYIPTFEKVKEYLLSDIKKDDQVIVTGSG 449


>gi|313837456|gb|EFS75170.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA2]
 gi|314929334|gb|EFS93165.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL044PA1]
 gi|314971663|gb|EFT15761.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA3]
 gi|328906998|gb|EGG26764.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium sp. P08]
          Length = 471

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 96/271 (35%), Gaps = 13/271 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D   T QAYF     +     P+    +  ADD  + E+  R  + G   
Sbjct: 187 VITNVEADHLDNWGTPQAYF--DGFVSMATRPEVRYVVTNADDPGAAELACRLESTGTVR 244

Query: 268 --LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                  +   + L  +         T+            +PG + + NA  A  +   +
Sbjct: 245 VVTYGESEQAEVRLVDLDLNGKAASATLVHGPTQGRLELQVPGRYNLSNAAAAYCVGSLL 304

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           GI    +L  +        RF+ VG       I+ DYAH    L   L   R   +G+  
Sbjct: 305 GISHRDLLAGIASFTGTLRRFQLVG-RVNDVSIFDDYAHHPTELRATLGAARRAVTGQGR 363

Query: 386 VVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIP 437
           V+           R  +G+   AL L D  IV+D  P  EDP      E +   ++    
Sbjct: 364 VIACFQPHLFSRTRDFVGEFGSALTLVDRVIVSDIYPAREDPIPGVTGELVHDAVLAAGG 423

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 ++ +      E +   D+++  G G
Sbjct: 424 DSRYVPDKQDLPEALAEEVRPGDLVITLGAG 454


>gi|229198586|ref|ZP_04325288.1| Folyl-polyglutamate synthetase [Bacillus cereus m1293]
 gi|228584868|gb|EEK42984.1| Folyl-polyglutamate synthetase [Bacillus cereus m1293]
          Length = 434

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 114/386 (29%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLENAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V  +G     +H +      +          +D         +       + A + +   
Sbjct: 221 VYEMGNHFTSLHKQSSEDGEHFDFTCPFASFEDVRISMKGSHQVGNAALALMAVMYVKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLESIADEIIFTT---FAFDRAISAGELASYAKEESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EML + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMLGENDVFIITG 417


>gi|15594930|ref|NP_212719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi B31]
 gi|3914074|sp|O51532|MURD_BORBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2688512|gb|AAB91522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi B31]
          Length = 451

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 122/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNDSLIGSFSNSRAVFIIPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILSNFKGIEHRLEFVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|288817395|ref|YP_003431742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786794|dbj|BAI68541.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751002|gb|ADO44485.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 422

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 127/360 (35%), Gaps = 48/360 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R        ++A+TGT GKS+V      I +    +  + G T T  S        
Sbjct: 76  ELAYRF---FKGRVVAITGTDGKSTVTRMTYLILREHFGNVLEGGNTGTAFSEIVLR--- 129

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
              P  LA               +E SS       L   +   G+F N  RDH+D+H + 
Sbjct: 130 --DPFSLA--------------VLEVSSFQGKT--LKTFRPCCGAFLNFARDHLDWHISL 171

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y ++K  +F+    ++   +    +               +      +     L++  
Sbjct: 172 EDYLHSKYNIFKHQQEEDFVVLYSRQEEVVNT------PTRAKKYFFSSKDAHGFLREGR 225

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           A    +++    + K +       G     NAL +A +   +G+ S  + + L +   +P
Sbjct: 226 AYFMGEELFEVSKLKIY-------GHHNYRNALASAMIAKLMGVPSETIRKVLYEFSGLP 278

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E +G            A T N+LE  LK++      + +++   G D+      +  
Sbjct: 279 FRLELLGEWEGVKVFNDSKATTVNALESALKSMPD----KSVILIAGGRDKGGDFESLYD 334

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I   +    ++       E  +KI      G     +  +  EA++ A     + D+++
Sbjct: 335 LILQKVRLALLI------GEAKDKIFQA-WRGATILEKVESLEEALKVAKAYSQRGDIIL 387


>gi|229158075|ref|ZP_04286145.1| Folyl-polyglutamate synthetase [Bacillus cereus ATCC 4342]
 gi|228625394|gb|EEK82151.1| Folyl-polyglutamate synthetase [Bacillus cereus ATCC 4342]
          Length = 433

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 115/386 (29%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  +G     +H +                 +D         +       + A + +   
Sbjct: 221 LYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        + +  +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRNGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D   +  E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAILAGELASYSKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EML + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMLGENDVFIITG 417


>gi|239813924|ref|YP_002942834.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
 gi|239800501|gb|ACS17568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
          Length = 707

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 141/431 (32%), Gaps = 56/431 (12%)

Query: 59  FIPQAIAQGAEAI--VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           ++P A  + AE +  +   + +    +A    +TP L +    +          G  P  
Sbjct: 259 YVPTAAREAAEFVAKIAELSATNPASAAVEEEDTPQLKLVPIEE-----PPAPRGYTPA- 312

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +LAVTGT+GK++V +   Q+ +R+G S    G             +       L      
Sbjct: 313 VLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPTLLDTLAAHI---DAETL------ 363

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS  LD   + G +  A +  NL +DH+D+H   QAY +AK R+F  
Sbjct: 364 -----PDVWVLELSSFQLD--GVQGFEPTAATVLNLTQDHLDWHGDMQAYASAKARIFGT 416

Query: 237 -------------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                        +    +P  +       +  +    +   R    G +        V 
Sbjct: 417 QGLMVLNRDDPGVMAMLPAPVKVKLQRPQVRAHVTFGASMPLRPGDYGIERVNGMAWLVR 476

Query: 284 A----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           A               +  I ++      +  + G     NAL A  L  A G     +L
Sbjct: 477 ALEADETQKRKRGAVVEEEIFLQRLLPADVLRIRGRHNAMNALAALALASAAGCPLGPML 536

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             L +    P R E +                  +       +  +   R +VV   G  
Sbjct: 537 YGLREYRGEPHRVEPIAIVDEVEYFDDSKGTNVGATVA---ALNGLGEDRRVVVILGGEG 593

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           + Q   P+   +A   A   ++        D   I   +       +  G+  EA++ A 
Sbjct: 594 KGQDFEPLAAPVA-QYARAVVLI-----GRDAPLIEQALAATGASLMHAGSMQEAVKLAA 647

Query: 454 EMLNKQDVLVV 464
              N  D +++
Sbjct: 648 ARANPGDAVLL 658


>gi|77460893|ref|YP_350400.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
 gi|109892724|sp|Q3K745|MURC_PSEPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77384896|gb|ABA76409.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
          Length = 486

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 139/434 (32%), Gaps = 63/434 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A A  A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAA--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG    +++   + +L T   +      
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADE 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       ++ +    TN+  DH+  +             F
Sbjct: 175 SDASFLH--------------------LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++                        V     +   T+ 
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPLVKRPTVTYGFSEDADV--RAINVRQQGMQTFFTVL 272

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++  D    +PG   V N+L    +    G+    +++ L     V  RF+  G   
Sbjct: 273 RPDREPLDVSVNMPGNHNVLNSLATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELP 332

Query: 354 R---GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  +  DY H    +  ++K +R     R  +V      R    R +       LA
Sbjct: 333 VDGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERR-LVMVYQPHRYSRTRDLYDDFVNVLA 391

Query: 411 D--IAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML----- 456
           D  + ++ +  P  E+P       K+   I   G    I        I   +++      
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRKLCNSIRQRGQLDPIY-------IERGVDLAPLVKP 444

Query: 457 --NKQDVLVVAGKG 468
                D+L+  G G
Sbjct: 445 LLRAGDILLCQGAG 458


>gi|315918003|ref|ZP_07914243.1| folylpolyglutamate synthase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317059318|ref|ZP_07923803.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_5R]
 gi|313684994|gb|EFS21829.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_5R]
 gi|313691878|gb|EFS28713.1| folylpolyglutamate synthase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 414

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 116/354 (32%), Gaps = 23/354 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPSPIYLAK 172
            I+ + GT+GK S A+ +++I   +G    +               + +  +   I    
Sbjct: 39  KIIHIAGTNGKGSTATTLERILLEAGYQVGKYTSPHILKFNERIIANGKQISDEEIEKYY 98

Query: 173 ALSYLSS--------QGVTHVSVEAS---SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                                ++  S      LD   L+         TN+ +  +    
Sbjct: 99  YQVEKIMEEEKIDATFFEITTAMMFSYFRDKKLDYVVLETGMGGRLDATNVSQAELCIIT 158

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    +      + KE   II           +                       
Sbjct: 159 NVSLDHTEYLGDSIYKIAKEKAGIIKNCPKVIVADQQEEFLQAILEEKAEVINVLNKYAD 218

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                + ++    ++ +  ++ F L G++Q +N L A      +GI   ++    EK+  
Sbjct: 219 ATYQLDFEKFMTEIKIEGKNYHFSLFGDYQYHNFLCAYEAAKQLGISEEIIQRAAEKVVW 278

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              RFE          + +D AH  + +  ++K ++       + +      +D+  +P 
Sbjct: 279 EC-RFEIAARQPL---VILDGAHNPDGVRELVKIVKQHYHKTEVAILTSI-LKDKDIKP- 332

Query: 402 MGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           M ++  +++D  I+T   DNPR    +++  ++ +    F  + +  +A +  I
Sbjct: 333 MLEMLAEVSDDIILTSLADNPRGSTAKELF-DLANNPDIFSMEEDMKQAYKLLI 385


>gi|89095261|ref|ZP_01168182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
 gi|89080468|gb|EAR59719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
          Length = 449

 Score = 58.0 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 119/360 (33%), Gaps = 44/360 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    ++A+TG++ KS+V + V ++ + +G++    G   T      +        I
Sbjct: 103 FCREISAPVIAITGSNAKSTVTTLVGEMAEAAGINVGVCGNIGTPVLEMLEQPEKDLYVI 162

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                   SS  L+    + ++    +  N+  DH+D + + Q Y+ 
Sbjct: 163 EL-------------------SSFQLET--TNDLRAEVATVLNISPDHMDRYDSMQDYYK 201

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK      +       ++  DD+ +  ++      G +  +       + L  +      
Sbjct: 202 AK----HRIFRGAKNVVVNRDDSLTAPLL----PQGVKQTAFHLGKPDLKLFGLIEDQGD 253

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             + + ++         + G   + NAL A  L  A G+    +L  L     +  R E+
Sbjct: 254 VWLALGLDKLIAASELKMRGRHNLANALAALALGQAAGLPMDAMLNALRGFTGLRHRCEW 313

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V  +               +    L  +    S    +V   GGD   GK     ++A  
Sbjct: 314 VAEHQGVTYFNDSKGTNVGATVAALNGLGGTLSEENGIVLIAGGD---GKGAEFVELAEP 370

Query: 409 LADI----AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           L +       +  D    E       +I              EA+  A ++    D++++
Sbjct: 371 LRNYGRALVYIGVD---GERLASQCGDI-----NSRPAATMDEAVVIASQLAKSGDIVLL 422


>gi|325911815|ref|ZP_08174219.1| bifunctional protein FolC [Lactobacillus iners UPII 143-D]
 gi|325476321|gb|EGC79483.1| bifunctional protein FolC [Lactobacillus iners UPII 143-D]
          Length = 420

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DN + + P  I A+        ++  N   A++ A +     D++VV G
Sbjct: 362 DNLQRKLPVAILAQNFKN--HVMQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|313884894|ref|ZP_07818646.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619585|gb|EFR31022.1| UDP-N-acetylmuramate--L-alanine ligase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 443

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 123/391 (31%), Gaps = 52/391 (13%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSL-QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            F P  I +G   I  ++      +         PI       KFL              
Sbjct: 55  EFSPDNIKEGLTIIAGNAFGDDHPELVKARELGLPIYR---YHKFLGDLIKNYTS----- 106

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV+G+ GK+S    +  +      +S+ IG               T      A   + 
Sbjct: 107 -IAVSGSHGKTSTTGLLSHVVSHIQPTSYLIG-------------DGTGFGDEAANYFAL 152

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            + +   H    +  + +               TN+  DH D++ +  A F+A      +
Sbjct: 153 EACEYRHHFLAYSPDYAI--------------ITNVDFDHPDFYPSIDAVFDAMQTFANQ 198

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                   I   +D Y +++  +                 ++  K+       Q  + + 
Sbjct: 199 THKG---VIACGEDEYLRKLEAKVP----VHFYGFSHDNEVYADKIERTPEGSQFDVYIN 251

Query: 297 GKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+ +     P  G+  + NAL    +    G D  LV +H+     V  RF         
Sbjct: 252 GEFYHHFVLPAFGQHNILNALAVITVLNLEGFDKDLVAQHIASFPGVKRRF--SARKVNN 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIA 413
             +  DYAH  + +   +   +      RI+ VF      R        GK AL LAD  
Sbjct: 310 LTLIDDYAHHPSEIRATIDAAQQKFPHKRIVAVFQPHTFSRTIALLDEFGK-ALSLADDV 368

Query: 414 IVTD--DNPRSEDPEKIRAEIIHGIPGFIEK 442
            + D   + R  D      ++   +P  +E 
Sbjct: 369 YLVDIFHSAREHDGAVTIQDLAAKVPKNVEI 399


>gi|256372024|ref|YP_003109848.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008608|gb|ACU54175.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 455

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 140/415 (33%), Gaps = 55/415 (13%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ +  S+A    +   +A      P+L        L+           + ++AV+GT 
Sbjct: 69  GADVVAASTAIPSSNVELAAARARGVPVLSRAELLAALTA---------GKQVVAVSGTH 119

Query: 125 GKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  + + Q  Q + L  S+ IG     +  +    + +   +   ++ +        
Sbjct: 120 GKTTTTAMIAQALQAADLAPSWVIGAELNEAGASGHAGIGSLFVVEADESDATF------ 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                     L   R   +       TNL  DH+D++ +      A +  FE  +   + 
Sbjct: 174 ----------LAVDRHLAV------ATNLEPDHLDHYGSFD----ALVASFEAFVGGSAL 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A +   D      +      G     V    +      V    +          +     
Sbjct: 214 APVICVDDPR---LAALAPEGALTYGVAEAARLQIRNPVLTPTHSAFECFLDHRRLGSIE 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V N   A    +++G     V   L +   V  RF+F     RG RI  DYA
Sbjct: 271 LGVLGMHNVRNGAAAVAAALSVGAPFDAVALALRRYVGVARRFQF-KRELRGARIIDDYA 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L+  R + SGRI+VVF      R +     +G+   D AD  +VTD     
Sbjct: 330 HLPGEITATLQAARQLGSGRIVVVFQPHRYSRTKLLGVELGRALGD-ADEVVVTDVYAAG 388

Query: 423 EDPEKI---------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E+P  I         RA             +R         ++   DV++  G G
Sbjct: 389 EEP--IPGVSGEVVWRAAAERLGERAHWVADRGALAAFVASVVRPGDVVLTMGAG 441


>gi|228987709|ref|ZP_04147820.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771983|gb|EEM20438.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 433

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 114/386 (29%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  +G     +H +                 +D         +       + A + +   
Sbjct: 221 LYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D   +  E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAILAGELASYSKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EML + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMLGENDVFIITG 417


>gi|332799092|ref|YP_004460591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
 gi|332696827|gb|AEE91284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
          Length = 468

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 20/283 (7%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ VE SS  L+   +   +       N+ +DH++ H+T + Y  AK R+ E  +  +  
Sbjct: 175 YLVVEVSSFQLE--NIMHFRPKISVILNITKDHLNRHKTFEKYIEAKARILENQIEGDYT 232

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y DD   +   K+A              +  ++K    +         V   +    
Sbjct: 233 VLNY-DDPIVRTFAKKAKPKVLFFSRKEELERGAYVKNGVIVIRDNGKIYPVLKAE---E 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   + NAL AA +     I+   + E ++    V  R EFV        I    A
Sbjct: 289 LGIKGSHNLENALAAACVAWITRINLNNMAETMKDFRGVEHRLEFVANIDGIKFINDSKA 348

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++ +  ++ +         +V   GG   +       K         I+  D     
Sbjct: 349 TNPDAAQKAIEALEE------PIVLIAGGYDKKSDYSDFIKTFKGKVKKLILIGDT---- 398

Query: 424 DPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I  +  I HG     +  +  +A+++A       DV+++
Sbjct: 399 --ASIIEDTAIKHGFFDIEKANSLQDAVKSAYNAAAAGDVVLL 439


>gi|324328360|gb|ADY23620.1| folylpolyglutamate synthase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 434

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 114/387 (29%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLENAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V  +G     +H +      +          +D         +       + A + +   
Sbjct: 221 VYEMGNHFTSLHKQSSEDGEHLDFTCPFASFEDVRISMKGSHQVGNAALALMAVMYVKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLESIADEIIFTT----FAFDRAISADKLASYAKEESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EML + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMLGENDVFIITG 417


>gi|134102301|ref|YP_001107962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914924|emb|CAM05037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 469

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 117/359 (32%), Gaps = 45/359 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   LAVTGT+GK++    ++ I +  G+     G                         
Sbjct: 112 PATWLAVTGTNGKTTTVGMLESILRADGVDVVACGNVGLPVV------------------ 153

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                  G   ++VE SS  L   +       A    NL  DH+D+H +  AY  AK R+
Sbjct: 154 --DAVRAGHRVLAVELSSFQLHWSQTVA--PHASVVLNLAADHLDWHGSLDAYGAAKARV 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +       S A+  ADD +S  +         R +S         +  V +     +   
Sbjct: 210 YAG----NSVAVHNADDEWSVRLADAGAPQQARRVSFTLSDPAPGVLGVESGALVDRAFG 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                         G   V NAL AA L  A G++   V E L        R   V  ++
Sbjct: 266 DRVRLAAVADVHPAGPHNVANALAAASLARAYGVEPEAVAEGLRSFQPGAHRSVVVAESA 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A   ++ +  L+          +V    G  +      ++   A  LA + 
Sbjct: 326 GVSYVDDSKATNPHAADAALRA------HPKVVWIAGGLLKGADVEDLVAANAARLAGVV 379

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNKQDVLVVA 465
           ++  D  R          +    P      +E G+    + A+R A E       +V+A
Sbjct: 380 LIGRDRARF------AEALARHAPDVPVREVESGDDAGMLAAVRLAGEFAEPGCAVVLA 432


>gi|126643213|ref|YP_001086197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 115/354 (32%), Gaps = 31/354 (8%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGT 123
           A G +  +V      +            LVV +TR  L    +    ++ +  ++A+TG+
Sbjct: 3   ANGCQVAIVERPIDAE---------IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGS 53

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           SGK++    +  I  R   +    G  +          L  P        L         
Sbjct: 54  SGKTTTKEMLGSILSRLAPTLITRGNLNND--------LGVP-----MMLLELRKEHQYA 100

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + + A+  G   +    ++       N+G  H+     +     AK  ++  +LP+   
Sbjct: 101 VMELGANHQGEIDYTSKIVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVA 160

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I   DD       +    A    +     G  +   ++  +       +          
Sbjct: 161 IIPQQDD----FTAEIREAAKSHQIMSFGAGGDVFATEIELLPQSANFQLHTPQGSSFVR 216

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  GE  V NA  A    +A+G+    +++ L +     GR  F+        I   Y 
Sbjct: 217 LPFAGEHNVQNATAAVAFALALGVSLEDIVKGLAQAQGAKGRLNFIQKAPH-LFIDDTYN 275

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLA-DIAI 414
               S+    + +      +++V+   G  GD    +   +G+   +L  D  +
Sbjct: 276 ANPTSMRAAAQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIV 329


>gi|332531950|ref|ZP_08407834.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038577|gb|EGI75020.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 483

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 143/447 (31%), Gaps = 59/447 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R I+AG  +F+   G+ E+    +  A       +VVSSA    +          + VV 
Sbjct: 58  RLIKAGAEVFI---GHHENN---VKDA-----NVVVVSSAIDETNPEIIAAKAARVPVV- 105

Query: 97  NTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTI 153
             R+   L+      +G      +A+ GT GK++  S +  I  ++G   +F IG     
Sbjct: 106 --RRAEMLAELMRFRHG------IAIAGTHGKTTTTSLIASIYGQAGLDPTFIIGGLLNS 157

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +        +        ++ +                          ++ +    TN+ 
Sbjct: 158 AGSNAKVGKSDFLIAEADESDASFLH----------------------LQPMVSVITNIE 195

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH+D +             F   LP    A++  D   + E++ R              
Sbjct: 196 EDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVAAELIPRFGRPVITYGESKDA 255

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +      A      VT + +G+       +PG     NA  A  +     I +  +L
Sbjct: 256 DYRMSDFSQSANTCTFTVT-NKQGECLTATLNMPGRHNALNATAAIAVAKDQNIANHAIL 314

Query: 334 EHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           E L+K   +  RF+  G          +  DY H  + +   +  +R     + +V+   
Sbjct: 315 EALQKFEGIGRRFQHYGEFENERGNVMLVDDYGHHPSEVAATIAAVREGWPDKRLVMVYQ 374

Query: 391 GGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEK 442
                R +       K+  D  D  ++ D     EDP      + +   +       +  
Sbjct: 375 PHRFSRTRDLYEDFVKVLAD-VDQLLLLDVYSAGEDPIVGADSKSLCRSLRQRGKEPLHV 433

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               E        L   D+++  G G+
Sbjct: 434 ATNAELAGVLAANLQNNDLVLTQGAGN 460


>gi|312149280|gb|ADQ29351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi N40]
          Length = 451

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 122/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYYKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNDNLIGSFSNSRAVFIIPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILNNFKSIEHRLEFVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIINILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|291003737|ref|ZP_06561710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 479

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 117/359 (32%), Gaps = 45/359 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   LAVTGT+GK++    ++ I +  G+     G                         
Sbjct: 122 PATWLAVTGTNGKTTTVGMLESILRADGVDVVACGNVGLPVV------------------ 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                  G   ++VE SS  L   +       A    NL  DH+D+H +  AY  AK R+
Sbjct: 164 --DAVRAGHRVLAVELSSFQLHWSQTVA--PHASVVLNLAADHLDWHGSLDAYGAAKARV 219

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           +       S A+  ADD +S  +         R +S         +  V +     +   
Sbjct: 220 YAG----NSVAVHNADDEWSVRLADAGAPQQARRVSFTLSDPAPGVLGVESGALVDRAFG 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                         G   V NAL AA L  A G++   V E L        R   V  ++
Sbjct: 276 DRVRLAAVADVHPAGPHNVANALAAASLARAYGVEPEAVAEGLRSFQPGAHRSVVVAESA 335

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A   ++ +  L+          +V    G  +      ++   A  LA + 
Sbjct: 336 GVSYVDDSKATNPHAADAALRA------HPKVVWIAGGLLKGADVEDLVAANAARLAGVV 389

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNKQDVLVVA 465
           ++  D  R          +    P      +E G+    + A+R A E       +V+A
Sbjct: 390 LIGRDRARF------AEALARHAPDVPVREVESGDDAGMLAAVRLAGEFAEPGCAVVLA 442


>gi|319408823|emb|CBI82480.1| UDP-N-acetylmuramate--alanine ligase [Bartonella schoenbuchensis
           R1]
          Length = 468

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 77/437 (17%), Positives = 144/437 (32%), Gaps = 55/437 (12%)

Query: 50  VGNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFA 106
            G     GH    + +   A+ +V+S+A    +          + +V   R+   L+   
Sbjct: 49  KGINIHIGHR--AENLEA-AKVVVISTAIKKTNPEYIAAKEKHLPIV---RRAEMLAELM 102

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                      +AV GT GK++  S V  +   S      I     I+++  + R+    
Sbjct: 103 RF------RRTIAVGGTHGKTTTTSMVAALLDASNFDPMVI-NGGIINAYGTNARMGCGD 155

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            + +    S                          +       TN+  +H+DY+ +  A 
Sbjct: 156 WMVVEADESD--------------------GTFLKLPADIVVVTNIDSEHLDYYGSFDAV 195

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL------K 280
             A  R F E +P    A++  D    + +  R  +          Q     L      +
Sbjct: 196 REA-FRQFVENMPFYGFAVMCLDHPEVQTLASRIDDRWVVTYGANPQADVRFLNLSMEGQ 254

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           K       +    + E +  + + P+ G+  + NA  A  +   +GI +  + + L +  
Sbjct: 255 KTHFDVLIRSRKTNEETELRNLVLPMSGQHNISNATAAIAIAHELGISNESIRKGLAEFC 314

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  RF   G +  G  I+ DY H    ++ +L   R    GR+I +      R      
Sbjct: 315 GVKRRFTQTG-SWCGVEIFDDYGHHPVEIKAVLSAARESAKGRVIAIV--QPHRYSRLHD 371

Query: 401 IMGKIALDL--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +          AD  ++       E+P      +++   I       +   N +E I   
Sbjct: 372 LFDDFVTCFNDADTVMIAPVYAAGEEPITGFGSKELVEHIQMASHRDVRLVNTLEDIALI 431

Query: 453 IE-MLNKQDVLVVAGKG 468
           I  +    D +V  G G
Sbjct: 432 IATLAKPGDYVVFLGAG 448


>gi|229019682|ref|ZP_04176489.1| Folyl-polyglutamate synthetase [Bacillus cereus AH1273]
 gi|229025921|ref|ZP_04182313.1| Folyl-polyglutamate synthetase [Bacillus cereus AH1272]
 gi|228735367|gb|EEL85970.1| Folyl-polyglutamate synthetase [Bacillus cereus AH1272]
 gi|228741589|gb|EEL91782.1| Folyl-polyglutamate synthetase [Bacillus cereus AH1273]
          Length = 433

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 94/312 (30%), Gaps = 22/312 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +        V  E    G    R D   +I    T +     D+   
Sbjct: 120 TEFEIITVMAICYFGKVNFCDVVLFETGLGG----RFDSTNVIHPVLTIITNIGHDHMHI 175

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKK 281
                         ++    P I    D  + +V+++        V  +G Q   +H   
Sbjct: 176 LGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHANVYELGKQFTSLHKHS 235

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEK 338
                +          +D         +       + A + +   +        ++   +
Sbjct: 236 NEDGEHFDFACPFASFEDVRISMKGIHQVGNATVALMAVMYLKTYLSFLINEEEMKVGLQ 295

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQG 397
                GRFE +        I +D AH    +E ++K +      + +VV F   GD+   
Sbjct: 296 EAYWIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDKNVVVLFTALGDKQLH 352

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIE 454
               M      +AD  I T           I A+ +         +   +  EAI T IE
Sbjct: 353 N---MVGQLEAIADEIIFTT----FAFDRAISADKLASYSQKESKLIFEDWKEAIDTKIE 405

Query: 455 MLNKQDVLVVAG 466
           M+ + DV ++ G
Sbjct: 406 MIGENDVFIITG 417


>gi|218674669|ref|ZP_03524338.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli GR56]
          Length = 471

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 89/281 (31%), Gaps = 17/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +  A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGSFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNAL 316
                              ++    +   V I                P+PG   + NA 
Sbjct: 233 RKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHNISNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI SA + + L     V  RF   G    G +I+ DY H    ++ +L+  
Sbjct: 293 AAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK------I 428
           R    GRII V      R      +  + A     AD   +       ED  +      +
Sbjct: 352 REACKGRIIAV--HQPHRYSRLASLFEEFAACFNDADSIFLAPVYAAGEDAIEGADSTSL 409

Query: 429 RAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            + I  G        +  E + +   E+    D +V+ G G
Sbjct: 410 VSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|28871542|ref|NP_794161.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966566|ref|ZP_03394717.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|302059793|ref|ZP_07251334.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato K40]
 gi|302131740|ref|ZP_07257730.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999568|sp|Q87WY6|MURC_PSESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28854793|gb|AAO57856.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928416|gb|EEB61960.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|331016735|gb|EGH96791.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 486

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 135/426 (31%), Gaps = 64/426 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  +             F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   ++++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVRDILPLVKR-PTMTYGFSEDSDVRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGHVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  + A++ ++ +  P
Sbjct: 345 GHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAE-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLV--- 463
             E+P       + G        +  +        I   +E+           D+L+   
Sbjct: 404 AGEEP-------VPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 464 ---VAG 466
              +AG
Sbjct: 457 AGDIAG 462


>gi|94985731|ref|YP_605095.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus geothermalis DSM
           11300]
 gi|189029012|sp|Q1IXV8|MURC_DEIGD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94556012|gb|ABF45926.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus geothermalis DSM
           11300]
          Length = 465

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 125/411 (30%), Gaps = 43/411 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + ++ S A               +      R  ++L    L        + V GT GK
Sbjct: 77  GVDVLIASEAVPKNHPELVAARGAGV----EVRPRMALLDELLRAGPS---VGVIGTHGK 129

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT-PSPIYLAKALSYLSSQGVTHV 185
           ++  S +    Q +GL          +  F  + RL T P    + ++    +       
Sbjct: 130 TTTTSMIAVAMQGAGLDPAAF-VGGIVPEFGSNVRLGTGPFVAEVDESDRGFAV------ 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +      FTN   DH+     Q  Y+    +           A 
Sbjct: 183 ----------------LSCETAVFTNAEDDHVG--GNQATYWETVEQQHAAFARFVGQAR 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LF 304
                A    + +    +G R+     +G       +         T++  G+       
Sbjct: 225 RVLYCADWPGLDQLVTTSGERLNYGLAEGADYRAVDLRPDAEGTTFTVARRGEVLGEARV 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            LPG   V NAL A  +    G +       L        R++ +G    G  I  DYAH
Sbjct: 285 GLPGLHNVLNALAALAVTDLYGGNFQTAAAALAAFRGPGRRWQRIG-ELNGALIIDDYAH 343

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +  +   ++  R       +V       R Q   P +   AL  AD  +V D    SE 
Sbjct: 344 NATKVAAAVQAARQTGRRVRVVFQPHRYLRTQQSWPRLAD-ALMGADEVLVLDIATASEP 402

Query: 425 P-----EKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P       + ++     G  G     +R E +R   E     DV+V  G G
Sbjct: 403 PIPGIHATLVSDRMAQSGHTGVRYAPDRAEVVRYLRETACADDVIVTMGAG 453


>gi|229117960|ref|ZP_04247320.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock1-3]
 gi|228665409|gb|EEL20891.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock1-3]
          Length = 433

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/309 (17%), Positives = 94/309 (30%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +        V  E    G      + I  I    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKINFCDVVLFETGLGGRFDS-TNVIHPILTIITNIGHDHMHILGD 178

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                  +     +            DD   + + K A      +  +G     +H +  
Sbjct: 179 TLGEIAYEKAGIIK--SGVPVITGVQDDEALQVIQKVAKENHANLYELGKHFTALHKQSN 236

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKL 339
                   V      +D         +    +  + A + +   +        +      
Sbjct: 237 EDGERFDFVCPFASFEDVRMSMKGVHQVGNASLALMAIMYLKTYVSFLIEEEEIRAGLHE 296

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGK 398
               GRFE + +      I +D AH    +E ++K +      + I+V F   GD+    
Sbjct: 297 AYWIGRFEKLKS---NPDIIIDGAHNPEGIESLVKTVEAHYKDKNIIVLFTALGDKQLHN 353

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              M      +AD  I T     R+   +K+ A         I   +  EAI T +EM+ 
Sbjct: 354 ---MVGQLETIADEIIFTTFAFDRAISADKLAAHSQK--KSKIVFEDWKEAIDTKVEMIG 408

Query: 458 KQDVLVVAG 466
             DV ++ G
Sbjct: 409 GNDVFIITG 417


>gi|309804257|ref|ZP_07698334.1| bifunctional protein FolC [Lactobacillus iners LactinV 11V1-d]
 gi|308163660|gb|EFO65930.1| bifunctional protein FolC [Lactobacillus iners LactinV 11V1-d]
          Length = 420

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DN + + P  I A+        ++  N   A++ A +     D++VV G
Sbjct: 362 DNLQRKLPVAILAQNFKN--HVMQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|301384719|ref|ZP_07233137.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato Max13]
          Length = 486

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 135/426 (31%), Gaps = 64/426 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  +             F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMVTYGGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   ++++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVRDILPLVKR-PTMTYGFSEDSDVRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGHVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  + A++ ++ +  P
Sbjct: 345 GHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAE-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLV--- 463
             E+P       + G        +  +        I   +E+           D+L+   
Sbjct: 404 AGEEP-------VPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 464 ---VAG 466
              +AG
Sbjct: 457 AGDIAG 462


>gi|326560733|gb|EGE11101.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 46P47B1]
          Length = 460

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 106/357 (29%), Gaps = 22/357 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++  + +  I Q SG+ +        +     D+R      + LA 
Sbjct: 101 KDRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGF--LIGGVPLVNTDDRR-----LSLAF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAK 230
             S    +    +  +         R   +     +    NL  DH D      A     
Sbjct: 154 QHSSYLGKQFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQF 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +   +  K    I     +    + K       R    G       L           
Sbjct: 214 HHMIRMIPSKGQIIIPADTPSLETTLNKGVWTTVVRTSLNGDAEWQAKLDANDGSSFW-- 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +          + + G   V NAL A      +G+   +    L     +  R E +G
Sbjct: 272 --VHHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIAL 407
            +     ++ D+AH   ++   L    + +   RI  +     +  +    RP +   A 
Sbjct: 330 -DVDDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAA 388

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +AD  I     P+         E+I   P  +   +    I          D +++
Sbjct: 389 -IADQVI--WYEPQGLSWG--LKEVIGSTPNQLVLDSINAIIEHIKTYAKAGDAIII 440


>gi|228998694|ref|ZP_04158281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
 gi|228761162|gb|EEM10121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
          Length = 450

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/405 (15%), Positives = 132/405 (32%), Gaps = 51/405 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           + + +    +V +      +          I +V          A R+        + +T
Sbjct: 67  ELLERNISLVVKNPGIPYSNPLLVAAKEKQIPIVTEV-----ELAYRISEAP---FVGIT 118

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G++GK++  +   ++ +         G   T++                       +++ 
Sbjct: 119 GSNGKTTTTTLTFEMLKEGQKHPVIAGNIGTVACEV------------------AQAAKE 160

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V  E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +
Sbjct: 161 NEVVVTELSSFQL--MGVETFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEAD 218

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I  ADD     +   +        +         +K        +++    +     
Sbjct: 219 YSVI-NADDVDVMALSANSKGQKVLFSATKVIEDGACIKDGALYFKGEKIVEVQDIV--- 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L A  +   +G+++  ++  L++   V  R E+V T +        
Sbjct: 275 ----LPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRLEYVTTINNRKFYNDS 330

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDN 419
            A    + E  L           +++   G DR      ++        +    I+T   
Sbjct: 331 KATNMLATEKALSAFTQ-----PVILLAGGLDRGNEFDDLI-----PYFEHVKAILTYGQ 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                P+ +R     GI       N  EA+  A       DV+++
Sbjct: 381 TA---PKLVRVAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|226323567|ref|ZP_03799085.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
 gi|225208251|gb|EEG90605.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
          Length = 470

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 56/167 (33%), Gaps = 11/167 (6%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             VYNAL A  +   +G+ +  +   L   H    RFE+ G    G  I  DYAH    +
Sbjct: 295 HNVYNALAAIAVADILGVPAETIQTGLASFHGTDRRFEYKG-EVGGVTIIDDYAHHPTEI 353

Query: 370 EMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE----- 423
              LK+       ++  +F      R +       + AL  AD  I+ D     E     
Sbjct: 354 AATLKSAAHYPHKKLWCIFQPHTYTRTKALFSEFAE-ALAHADHVILADIYAARETDTLG 412

Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKG 468
               ++   +           +   AI           D+L+  G G
Sbjct: 413 ISSTQLADAVKEHGCDATYLPSFA-AIEEFVTTHCQPGDLLITMGAG 458


>gi|262395258|ref|YP_003287112.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|262338852|gb|ACY52647.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 485

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 148/472 (31%), Gaps = 67/472 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEA 70
           L     I      E  + E     R +  G  +F+        GH    QA  + + A  
Sbjct: 43  LNEGYQITGSDLSENPVTE-----RLVSKGATVFI--------GH----QASNVEK-ASV 84

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + ++          I +V   R+   L+      +G      +AV GT GK++
Sbjct: 85  VVVSTAINEENPEVIAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V QI   +GL    +     + S   + RL +   +      S  S          
Sbjct: 136 TTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------- 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+  DH+D +             F   LP    AI+  
Sbjct: 188 -------------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCI 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   +E++ R                 I   +      K    +     + D    +PG
Sbjct: 235 DDPVVRELIPRISRQVITYGFSEDADVRIENYRQEGQQGKFT-VVRKGRANLDITLNIPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHT 365
                NA  A  +     I+   +L+ +        RF+ +G    G     +  DY H 
Sbjct: 294 RHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHH 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE 423
              +++ +   R+    + +V+        + +        +     D+ I+ D     E
Sbjct: 354 PTEVDVTINAARSGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGE 412

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P        +   I   G    I      +       ++   D+++  G G
Sbjct: 413 KPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGAG 464


>gi|119505119|ref|ZP_01627195.1| UDP-N-acetylmuramate-alanine ligase [marine gamma proteobacterium
           HTCC2080]
 gi|119459101|gb|EAW40200.1| UDP-N-acetylmuramate-alanine ligase [marine gamma proteobacterium
           HTCC2080]
          Length = 478

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 132/425 (31%), Gaps = 43/425 (10%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            I  A     GA+ +V SSA               I VV    + L+       G     
Sbjct: 65  HIGHAAQNIVGADVLVTSSAIPSNTPELIAARQARIPVVPRA-EMLAELMRYRQG----- 118

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  +   +G     +     +++   + RL     + +    S 
Sbjct: 119 -IAVAGTHGKTTTTSLLASVFGEAGEDPTFV-IGGLLNNAGSNARLGAGQYLIVEADESD 176

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S                       +  +    TN+  DH+D++      +      F  
Sbjct: 177 ASFLH--------------------LLPMVSVVTNVEADHMDHYAGDIGNYEQAFLDFLH 216

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    AI+  DD   + ++ +                 +    V  +  +  +     
Sbjct: 217 NLPFYGLAILCLDDPGVQRLLPQITRRVVTYGRDSEADYCVSSVAVSGLQTRFLLNRPRG 276

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG- 355
                    +PGE    NA  AA +   +G+    +   L +   V  RF  +G  +   
Sbjct: 277 RSSLSINLNMPGEHNALNAAAAAAVATELGLADDAIENGLSQFSGVGRRFSPLGEVAWRG 336

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLAD 411
              ++  DY H  + +   L   R    G+ IV+        R +        +  D  D
Sbjct: 337 GVVQMIDDYGHHPSEVRATLNAARAAFPGQRIVMVFQPHRFSRTRDFYEDFVAVLSD-CD 395

Query: 412 IAIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++ D     E      D   +   I   G    +   +         ++L   D+L+ 
Sbjct: 396 LLVLLDVYSAGEDHIAGADARSLARSIRQRGAIDPVFAPDIKSVPAVLCDVLEPGDLLLT 455

Query: 465 AGKGH 469
            G G+
Sbjct: 456 QGAGN 460


>gi|229588491|ref|YP_002870610.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
 gi|259509778|sp|C3KCT1|MURC_PSEFS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229360357|emb|CAY47214.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
          Length = 481

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 140/434 (32%), Gaps = 63/434 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAE--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG    +++   + +L T   +      
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADE 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       ++ +    TN+  DH+  +             F
Sbjct: 175 SDASFLH--------------------LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++ +                      V     +   T+ 
Sbjct: 215 LHNLPFYGLAVVCLDDPVVREILPQVKRPTVTYGFSEDADV--RAINVRQEGMQTYFTVL 272

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT-- 351
              ++  D    +PG   V N+L    +    G+    ++E L +   V  RF+  G   
Sbjct: 273 RPDREPLDVSVNMPGNHNVLNSLATICIATDEGVSDEAIVEGLSRFAGVGRRFQVYGQLP 332

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  +  DY H    +  ++K +R     R  +V      R    R +       LA
Sbjct: 333 VEGGDVMLVDDYGHHPTEVAAVIKAVRGGWPERR-LVMVYQPHRYSRTRDLYDDFVNVLA 391

Query: 411 D--IAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML----- 456
           D  + ++ +  P  E+P       K+   I   G    I        I   +++      
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRKLCNSIRQRGQLDPIY-------IERGVDLAPIVKP 444

Query: 457 --NKQDVLVVAGKG 468
                D+L+  G G
Sbjct: 445 LLRAGDILLCQGAG 458


>gi|257454325|ref|ZP_05619588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
 gi|257448228|gb|EEV23208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
          Length = 486

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 127/397 (31%), Gaps = 52/397 (13%)

Query: 68  AEA--IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A A  I++S                 I +V +           +  +    I+A+TG++ 
Sbjct: 88  AVADRIIISPGIDPYLPVFDGARAKKIAIVSDI-----QLFHEVAKQRDIPIIAITGSNA 142

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + V ++ + +G      G   T               + L      ++       
Sbjct: 143 KSTVTTLVGEMVKNAGFKVGVGGNLGTP-------------ALDLLLEPIQMA------- 182

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L       +     +  N+  DH+D H     Y  AK      +       +
Sbjct: 183 VLELSSFQLQT--TTNLAAKVATVLNMSPDHLDRHGNMLGYHQAK----HRIFQGVQSIV 236

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D  S+ ++           +     ++  +K         +    +  +      P
Sbjct: 237 VNREDLLSRPLVADDMPTISFGSNAPDMNQYGLIKDSDGKIWLARGRERLLNEK---DVP 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + GE  + NAL A  +    G+    +L  L+    +P R EF+ T  +           
Sbjct: 294 IKGEHNLMNALSALAIGELAGLPLESMLTTLKNFVGLPHRCEFITTTHQLDCFDDSKGTN 353

Query: 366 SNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             S    +  +  +    G+ + V   G  + Q     + K  +D A +          E
Sbjct: 354 IGSTIAAILGLGKVYAPKGKKLAVILGGQGKGQNF-AELAKPLMDYAQVVYFI-----GE 407

Query: 424 DPEKIRAEII-HGIPGF-------IEKGNRIEAIRTA 452
           D +KI A++   G+           +     +A+  A
Sbjct: 408 DADKIAADLASAGLDAHNPAGIVLTKCQTLEQAVNQA 444


>gi|218249929|ref|YP_002375093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi ZS7]
 gi|226321891|ref|ZP_03797417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi Bol26]
 gi|226711886|sp|B7J2E8|MURD_BORBZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218165117|gb|ACK75178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi ZS7]
 gi|226233080|gb|EEH31833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi Bol26]
          Length = 451

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 122/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNGNLIGSFSNSRAVFIIPKVITFFVSYYL---------NIDLNRT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILSNFKGIEHRLEFVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++             +AD  + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDFLSF-----SKIAD-IVRTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|124515890|gb|EAY57399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
           rubarum]
          Length = 487

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/400 (13%), Positives = 113/400 (28%), Gaps = 32/400 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS     + ++         L + N    +  +AS         ++AV GT+GKS+ +
Sbjct: 79  VIVSPGVPPRKWAGQEAP----LYIRNVMGEM-EWASSWTAVP---LVAVGGTNGKSTTS 130

Query: 131 SFVQQICQRSGLSSFQIGPTSTI------SSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           + +    + +G   F  G   T       S     + L T + + L+   +         
Sbjct: 131 ALLAHFLEAAGERVFLGGNFGTPLSDMVLSERRGSSPLPTVAVVELSSFQAETMGIFRPV 190

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           V++  +       R   +     +  N  +       T      A              A
Sbjct: 191 VNLLLNITPDHLDRYLSVDHYRNAKWNAFQTMEKESFTVLNRDPACGVYPPFSPISSRLA 250

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
             Y           +          +  +                   +     +     
Sbjct: 251 WFYG---------SKGPCPDRTGGLILERDALSATLDGIEGLPPISWNLEKFPLEGMGNR 301

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                  +   L            + ++ E       +P R E VG       I    A 
Sbjct: 302 QNLAAALLGAVLYLKATGKHPEQVTTVLEEAAASFRGLPHRMEVVGEWKGIRFINDSKAT 361

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  + L+      +G    V    G RD+G      +  +  +  +I        E 
Sbjct: 362 NVDATRLALEGY----AGHSPFVHLILGGRDKGAPYAPLREGIRTSVKSIAVL----GEA 413

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +KIR E+   +P      +  EA+  A    ++ D +++
Sbjct: 414 RDKIREELGSLVP-LRMCESLEEAVDVAAGQASEGDRVLL 452


>gi|52141049|ref|YP_085780.1| folylpolyglutamate synthase [Bacillus cereus E33L]
 gi|51974518|gb|AAU16068.1| folylpolyglutamate synthase [Bacillus cereus E33L]
          Length = 433

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 91/308 (29%), Gaps = 14/308 (4%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + +  +P  +           +++ K        + +          + 
Sbjct: 179 TLEEIAYEKAGIIKSGVPVITGVQDEEALQVIQKIAKENQANLYEMGNHFTSLHKQSSED 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 239 GEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K + +    + ++V F   GD+      
Sbjct: 299 WVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNK 458
            M      +AD  I T     + D      E+         +   N  EAI T +EM+ +
Sbjct: 354 -MVDQLETIADEIIFTT---FAFDRAISAGELASYAKKESKLVFENWKEAIDTKVEMIGE 409

Query: 459 QDVLVVAG 466
            DV ++ G
Sbjct: 410 NDVFIITG 417


>gi|15965928|ref|NP_386281.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium meliloti
           1021]
 gi|307308238|ref|ZP_07587947.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
 gi|307319705|ref|ZP_07599130.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|23821882|sp|Q92NM0|MURC_RHIME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15075197|emb|CAC46754.1| Probable UDP-N-acetylmuramate--alanine ligase [Sinorhizobium
           meliloti 1021]
 gi|306894636|gb|EFN25397.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|306901236|gb|EFN31842.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
          Length = 471

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 87/286 (30%), Gaps = 19/286 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +  A   A  +  E +       +          V K   
Sbjct: 173 LPADIAVVTNIDPEHLDHYGSFDAVRAAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNAL 316
                           H  ++    +   + I         +  D   P+PG   V NA 
Sbjct: 233 RKVVTYGENPQADVRFHNIRMDGATSIFDIEIRRRRTGQVIEIKDLRLPMPGRHNVSNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI    +   L     V  RF   G    G RI+ DY H    +  +L+  
Sbjct: 293 AAVAVAQRLGIKPEDIARGLATFGGVKRRFTLTG-EWNGARIFDDYGHHPVEIRAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R    GRI+ V      R      +          AD  ++       E+       E +
Sbjct: 352 REACQGRIVAV--HQPHRYSRLSSLFEDFTSCFNDADTILLAPVYAAGEEAIEGVSSEAL 409

Query: 429 RAEII-HGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
              I   G           EA+   I ++    D +V+ G G  T 
Sbjct: 410 VDRIKAAGHRDARHVPG-QEALAPVIAKIAQPGDFVVLLGAGSITY 454


>gi|312959058|ref|ZP_07773577.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
 gi|311286828|gb|EFQ65390.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
          Length = 481

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 140/434 (32%), Gaps = 63/434 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAE--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG    +++   + +L T   +      
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADE 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       ++ +    TN+  DH+  +             F
Sbjct: 175 SDASFLH--------------------LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++ +                      V     +   T+ 
Sbjct: 215 LHNLPFYGLAVVCLDDPVVREILPQVKRPTVTYGFSEDADV--RAINVRQEGMQTYFTVL 272

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++  D    +PG   V N+L    +    G+    ++E L +   V  RF+  G   
Sbjct: 273 RPDREPLDVSVNMPGNHNVLNSLATICIATDEGVSDEAIVEGLSRFAGVGRRFQVYGQLP 332

Query: 354 RG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  +  DY H    +  ++K +R     R  +V      R    R +       LA
Sbjct: 333 VDGGDVMLVDDYGHHPTEVAAVIKAVRGGWPERR-LVMVYQPHRYSRTRDLYDDFVNVLA 391

Query: 411 D--IAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEML----- 456
           D  + ++ +  P  E+P       K+   I   G    I        I   +++      
Sbjct: 392 DANVLLLMEVYPAGEEPIPGADSRKLCNSIRQRGQLDPIY-------IERGVDLAPIVKP 444

Query: 457 --NKQDVLVVAGKG 468
                D+L+  G G
Sbjct: 445 LLRAGDILLCQGAG 458


>gi|312872462|ref|ZP_07732531.1| bifunctional protein FolC [Lactobacillus iners LEAF 2062A-h1]
 gi|311092044|gb|EFQ50419.1| bifunctional protein FolC [Lactobacillus iners LEAF 2062A-h1]
          Length = 420

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DN + + P  I A+        ++  N   A++ A +     D++VV G
Sbjct: 362 DNLQRKLPVAILAQNFKN--HVMQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|257452777|ref|ZP_05618076.1| dihydrofolate synthase [Fusobacterium sp. 3_1_5R]
 gi|257466855|ref|ZP_05631166.1| dihydrofolate synthase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 409

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 118/354 (33%), Gaps = 23/354 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY------ 169
            I+ + GT+GK S A+ +++I   +G    +      +    +                 
Sbjct: 34  KIIHIAGTNGKGSTATTLERILLEAGYQVGKYTSPHILKFNERIIANGKQISDEEIEKYY 93

Query: 170 -----LAKALSYLSSQGVTHVSVEAS---SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                + +     ++      ++  S      LD   L+         TN+ +  +    
Sbjct: 94  YQVEKIMEEEKIDATFFEITTAMMFSYFRDKKLDYVVLETGMGGRLDATNVSQAELCIIT 153

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    +      + KE   II           +                       
Sbjct: 154 NVSLDHTEYLGDSIYKIAKEKAGIIKNCPKVIVADQQEEFLQAILEEKAEVINVLNKYAD 213

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                + ++    ++ +  ++ F L G++Q +N L A      +GI   ++    EK+  
Sbjct: 214 ATYQLDFEKFMTEIKIEGKNYHFSLFGDYQYHNFLCAYEAAKQLGISEEIIQRAAEKVVW 273

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              RFE          + +D AH  + +  ++K ++       + +      +D+  +P 
Sbjct: 274 EC-RFEIAARQPL---VILDGAHNPDGVRELVKIVKQHYHKTEVAILTSI-LKDKDIKP- 327

Query: 402 MGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           M ++  +++D  I+T   DNPR    +++  ++ +    F  + +  +A +  I
Sbjct: 328 MLEMLAEVSDDIILTSLADNPRGSTAKELF-DLANNPDIFSMEEDMKQAYKLLI 380


>gi|225868966|ref|YP_002744914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702242|emb|CAW99994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 457

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 137/417 (32%), Gaps = 55/417 (13%)

Query: 60  IPQAI-AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR------KFLS-----LFAS 107
             QA+  +G   I  S    L D         P +  DN        K +S       A 
Sbjct: 52  AAQALLEEGIRVICGSHPLELLDEDFYCMVKNPGIRYDNPMVVRALDKAISILTEVELAY 111

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            +       I+ +TG++GK++  + +  +      S+   G     +S            
Sbjct: 112 LVSEAP---IIGITGSNGKTTTTTMIADVLNVGDQSALLAGNIGFPASEV---------- 158

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                     ++     + +E SS  L     +  +      TNL   H+DYH + + Y 
Sbjct: 159 --------AQAATAKDILVMELSSFQLL--GTEQFQPHIAVITNLVPTHLDYHGSFEDY- 207

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            A     +  +  +   ++ AD    K + ++   +     +                  
Sbjct: 208 IAAKWRIQHRMTGKDYLVLNADQELVKSLAQKTKASPVFFSTKEKVDGAYLADGYLYFKE 267

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++ ++ +           +PG   + NAL    +    GI + ++   L     V  R +
Sbjct: 268 ERLMSAA--------ELGVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVKHRLQ 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VGT ++        +     +    K +    + R+I++   G DR      ++  +  
Sbjct: 320 LVGTLNQVTFYNDSKSTN---ILACQKALSGFDNSRVILI-AGGLDRGNEFDELVPDLVG 375

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  + ++       E  E+++         +++  +   A + A E     D++++
Sbjct: 376 -LKKMILL------GESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKAGDIILL 425


>gi|197105787|ref|YP_002131164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
 gi|226722943|sp|B4RFS2|MURD_PHEZH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|196479207|gb|ACG78735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
          Length = 469

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 121/412 (29%), Gaps = 63/412 (15%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA----------SRLYGKHPENILAVTGT 123
             A  +      +    P   V+  R+  +             +         I+A+TGT
Sbjct: 65  EFAAVMLSPGVPLTHPAPHWTVERAREAGAEIVGDIELFARTVNAAPEHKRPKIVAITGT 124

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +  IC  +G      G         +D        + L             
Sbjct: 125 NGKSTTTALIGHICAEAGRDVRIGGNIGYGVLGLEDMHGGAVYVLEL------------- 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                 SS+ LD      +        N+  DH++ H T   Y  A  R       K   
Sbjct: 172 ------SSYQLDL--TSSLHADVTVILNISPDHLERHGTMDEYV-AAKRRILLNQGKGDT 222

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSV--GYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           A+I  DD + + +      A  R +      +     +  +  +        + E  D  
Sbjct: 223 AVIGVDDPWGQRICTEITAANRRTIVPVSASKAMSRGVYALDGLLYDATGERAQEVADLK 282

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG     NA  A      +GI      +HL     +  R E V    +   +   
Sbjct: 283 RARSLPGRHNWQNAAAAYAAARGLGISGEEAAQHLMTFPGLAHRMETVAVLGKVRFVNDS 342

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  +++    + +                     G  P  G I     D  I  D  PR
Sbjct: 343 KATNADAARQAMSSYPKFYWI-------------AGGLPKTGGI-----DGLI--DLFPR 382

Query: 422 SE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK---QDVLVV 464
            E      +     A+++ G    +E G    A+R A         + ++++
Sbjct: 383 IEKAYLVGEAAPAFADVLRGKAPAVESGTIEAAVRQAYADARAAGQEAIVLL 434


>gi|148989060|ref|ZP_01820460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925557|gb|EDK76634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
          Length = 434

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 120/389 (30%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 67  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 116

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 117 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 157

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 158 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 216

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 217 TSKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 267

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +     +D+  + E L     V  R +FV             +    + +  L  
Sbjct: 268 LATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 327

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 328 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 376

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 377 GVAYVEATDIADATRKAYELATQGDVVLL 405


>gi|126735378|ref|ZP_01751124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
 gi|126715933|gb|EBA12798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
          Length = 466

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 56/408 (13%), Positives = 117/408 (28%), Gaps = 37/408 (9%)

Query: 63  AIAQGAEAIV---VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENI 117
           A    A  IV   +   Y + +       +  + V ++   F   FA+  +        +
Sbjct: 63  AFEDIACLIVSPGIPHLYPVPNPVIAAAWDAEVPVDNDIGLFFRSFATASWDDFDTQPRV 122

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GKS+ A+ +  I   +G  +   G         +         + L+   + L
Sbjct: 123 IAVTGSNGKSTTAALIHHILVENGRPAQLAGNIGRGVLDIEPAHDGEVVVLELSSYQTDL 182

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           +      V+V  +       R  G+     +   L  +              +  +  + 
Sbjct: 183 ARSMTPDVAVFTNLSPDHLDRHAGVGGYFAAKRRLFAEGGPD----------RAVIGVDE 232

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A    +      V++ +              +   L +         + + V  
Sbjct: 233 AEGRYIANQLIEGPGDDRVIRVSSGQKLAGQGWTVFARKGFLSEHRKGRQVGSIDLRVIT 292

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG     NA  A   C  +G+    +   ++    +P R + V        
Sbjct: 293 G-------LPGAHNHQNACAAYAACRTLGLGPKGIEAAMQSYPGLPHRSQVVAERDGVTF 345

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +    A   +S       ++     R I           G  P +  +A       I   
Sbjct: 346 VNDSKATNVDSAAK---ALQAFPKVRWICGGLQKEGGLDGLLPHLDHVAKAY---VI--- 396

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                 + E    +++         G    A+  A       +V+++A
Sbjct: 397 ----GREAEDFARQLMG--AEAEVCGTMDVAVSQAAADAQAGEVVLLA 438


>gi|146305958|ref|YP_001186423.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
 gi|189029020|sp|A4XQS5|MURC_PSEMY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145574159|gb|ABP83691.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
          Length = 480

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 129/431 (29%), Gaps = 58/431 (13%)

Query: 59  FIPQAIAQG--AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           FI  A      A+ +VVSSA +  +          I VV    + L+      +G     
Sbjct: 67  FIGHAAENAEQADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG----- 120

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  +    GL                              A + 
Sbjct: 121 -IAVAGTHGKTTTTSLLASVFAAGGLDP----TFVIGGRLNAAGTNAQLGSSRFLIAEAD 175

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S     H+    S                   TN+  DH+  +             F  
Sbjct: 176 ESDASFLHLQPMVS-----------------VVTNIDADHMSTYGGDFNRLKKTFIEFLH 218

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A++  DD   +E++ +                   +             +  +
Sbjct: 219 NLPFYGLAVLCVDDPVVRELLPQVGRPTVTYGFAED-ADVRAINVRQEGMRTYFTVLRPD 277

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG- 355
            +  D    +PG   V NAL    +    GID A ++  L     V  RF+  G      
Sbjct: 278 CEPLDVSVNMPGNHNVLNALATIAIATDEGIDDAAIVAGLSGFQGVGRRFQVYGELPVDG 337

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               +  DY H    +  ++K +R     R +V+        + +       ++  + A+
Sbjct: 338 GSVMLVDDYGHHPREVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVQVLGE-AN 396

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------N 457
           + ++ +  P  E+P       I G        +  +        +   +++         
Sbjct: 397 VLLLVEVYPAGEEP-------IPGADSRQMCHSIRQRGQLDPIYVERGVDLAPLLKPLLR 449

Query: 458 KQDVLVVAGKG 468
             D+L+  G G
Sbjct: 450 AGDILLCQGAG 460


>gi|15900589|ref|NP_345193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae TIGR4]
 gi|111658685|ref|ZP_01409328.1| hypothetical protein SpneT_02000191 [Streptococcus pneumoniae
           TIGR4]
 gi|30316108|sp|Q97RU8|MURD_STRPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14972164|gb|AAK74833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae TIGR4]
          Length = 450

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 120/389 (30%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 TSKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +     +D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|283768879|ref|ZP_06341790.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219]
 gi|283104665|gb|EFC06038.1| UDP-N-acetylmuramate--L-alanine ligase [Bulleidia extructa W1219]
          Length = 458

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/406 (14%), Positives = 127/406 (31%), Gaps = 54/406 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
              ++   ++ N P++   +    L+      +     N +A+ GT GK++  + +  I 
Sbjct: 81  DNPEYQQAMKLNIPLMNRKDL---LAEVMEHYH-----NSIAIAGTHGKTTTTAMLSYIF 132

Query: 138 QRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             + L                 + R+               S                  
Sbjct: 133 LAAELDPTI--SIGAHFKKIHGNVRIGHSEAFLAEACEYTNSFL---------------- 174

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                ++ +A    N+  DH+D+ +  Q   N+  +       + +  I    D   + V
Sbjct: 175 ----ALRPLASIILNIEEDHLDFFKDLQDIRNSFHQFVLNTSSEGALIIHSQIDHVEEIV 230

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
               ++       +          +       Q        +      P  G+  + NAL
Sbjct: 231 --EGYHGQVIQFGLNKGDLCAKNIQHLRHGGNQFEVWMRSERLGSIELPTGGKHNITNAL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G+ I+ G+    + + L++      RFE  G   +G  I  DYAH    ++  L   
Sbjct: 289 AAIGVAISFGVPFEAIQQGLKEFEGADRRFEKKGF-YQGAEIVDDYAHHPQEIQATLNMA 347

Query: 377 RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEIIH 434
           +     R+I+VF      R +       ++     D  ++       E D   I ++++ 
Sbjct: 348 KDYPHQRLIMVFQPHTYSRTKFLFEEFAEVLSQ-VDQVVLAPIYAAREIDDGSISSDLLA 406

Query: 435 G-----------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                       +  F+E  +         + L + D+ +  G G+
Sbjct: 407 KRINELKGNAVSLGSFVEIKD------YLKKQLQEGDLCLTVGAGN 446


>gi|118594410|ref|ZP_01551757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
 gi|118440188|gb|EAV46815.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
          Length = 481

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 128/396 (32%), Gaps = 30/396 (7%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   S  +  A  +      VV++   FL       +      I+ VTGT+GK++ 
Sbjct: 88  CIVLSPGISFSEIKAIAQGKD---VVNDIFLFLKFIEKNNHRVKNLKIIGVTGTNGKTTT 144

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F++ + +  G++    G             L+    I     +  +  +  +   +  
Sbjct: 145 CFFLEHLYKSLGVNVRVAGNIG----------LSPLELIDDLDYIEIIILEISSFQLLPF 194

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S GL       +KL  G   NL  DH+D H+  + Y+  K  L      K +       
Sbjct: 195 ISKGL------PVKLDVGILLNLSPDHLDIHKNMEEYYQTKAELLRS--SKRTVVSHNLG 246

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPG 308
              S E    +   G   +S         +K        ++     +  +       + G
Sbjct: 247 LNTSTEFTDISFGEGFEEVSKINNNGKSLIKYRQYFQYNKKYIFDDQGFRVEINKLKITG 306

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N          +G  S  +   L +   +P R E+V   +              S
Sbjct: 307 GHNLLNITAGIAAFRVLGGSSNRLKNILAEFKGIPHRIEWVRLLNDVDYFNDSKGTNVAS 366

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
                  +      + I++   G  + Q   P+   I  ++  + ++  D    E+    
Sbjct: 367 TVA---ALENFRDKKNIILIAGGESKGQSLLPLRDHIKRNVTHLLLIGKDAKLFEEC--- 420

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +II      +   +  +A+  A     K  V+++
Sbjct: 421 FKDIIT--TQIVRYESMDDAVCHAYRFARKHGVILL 454


>gi|306825643|ref|ZP_07458982.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432004|gb|EFM34981.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 450

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 131/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQTATAKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + +AY  AK  +   +   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQNNMAAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K         +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELATKTQATVVPFSTKEKVDGAYLENGQLYFRGEVVMAASEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+ ++ E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGVDNQIIKETLSAFGGVKHRLQFVDEIKGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAAEKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVTYVDATDIADATRKAYELATQGDVVLL 421


>gi|254230417|ref|ZP_04923797.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|151937050|gb|EDN55928.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 484

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 148/472 (31%), Gaps = 67/472 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEA 70
           L     I      E  + E     R +  G  +F+        GH    QA  + + A  
Sbjct: 43  LNEGYQITGSDLSENPVTE-----RLVSKGATVFI--------GH----QASNVEK-ASV 84

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + ++          I +V   R+   L+      +G      +AV GT GK++
Sbjct: 85  VVVSTAINEENPEVIAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V QI   +GL    +     + S   + RL +   +      S  S          
Sbjct: 136 TTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------- 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+  DH+D +             F   LP    AI+  
Sbjct: 188 -------------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCI 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   +E++ R                 I   +      K    +     + D    +PG
Sbjct: 235 DDPVVRELIPRISRQVITYGFSEDADVRIENYRQEGQQGKFT-VVRKGRANLDITLNIPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHT 365
                NA  A  +     I+   +L+ +        RF+ +G    G     +  DY H 
Sbjct: 294 RHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHH 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE 423
              +++ +   R+    + +V+        + +        +     D+ I+ D     E
Sbjct: 354 PTEVDVTINAARSGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGE 412

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P        +   I   G    I      +       ++   D+++  G G
Sbjct: 413 KPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGAG 464


>gi|254430906|ref|ZP_05044609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
           7001]
 gi|197625359|gb|EDY37918.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
           7001]
          Length = 473

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 110/361 (30%), Gaps = 36/361 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                      P   + +TGT+GK++V   V  + + SGL +   G     ++    +R 
Sbjct: 107 GEMVPAWEASRPVPWIGITGTNGKTTVTHLVHHLLEASGLDAPMAGNVGYSAAELVLDRR 166

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            + + +              T + VE SS+ ++      +    G +T L  DH++ H T
Sbjct: 167 GSGAEL-------------PTWMVVELSSYQIEA--APEVAPRVGIWTTLTPDHLERHGT 211

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH--NAGCRVLSVGYQGKFIHLK 280
            +    A   +   LL +    ++  DD   +                            
Sbjct: 212 LE----AYRAIKRSLLERSQVQVLNGDDPDLQRHAASWPGACWVTAGPRQELPEAIRPHL 267

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            V A    +    + +         +PGE    N ++A    +  G+    +        
Sbjct: 268 WVEAGRVIRDHNGTSQDLMAADCLAMPGEHNRQNMMLAIAAGLEAGLTGQQMECAFRSFP 327

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VP R E +   +         A   ++ E+ ++ +        +VV   G  +    R 
Sbjct: 328 GVPHRLERIDQQAGVSYYNDSKATNYDAAEVAVRALAG-----PLVVLAGGQAKRGEARG 382

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLN 457
            + +     A   ++          +     ++ G              EA+  A  +  
Sbjct: 383 WL-EALHQKARAVVL------FGAAQAEFQALLEGASFAGAIHRCDGLNEAVPLARALAA 435

Query: 458 K 458
           +
Sbjct: 436 E 436


>gi|163751825|ref|ZP_02159041.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
 gi|161328310|gb|EDP99471.1| UDP-N-acetylmuramate--alanine ligase [Shewanella benthica KT99]
          Length = 489

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 126/379 (33%), Gaps = 46/379 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q     A+ +VVS+A   ++          I VV    + L+      +G    
Sbjct: 72  GHQ-AEQVHD--ADVVVVSTAIDAENPELVAARKLRIPVVQRA-EMLAELMRYRHG---- 123

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGL-SSFQIG---PTSTISSFAQDNRLTTPSPIYLA 171
             +AV GT GK++  S +  +  ++G   +F IG    ++  ++    +R          
Sbjct: 124 --VAVAGTHGKTTTTSLIASVYAQAGRDPTFVIGGLLNSAGTNARLGHSRYLIAEADE-- 179

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                              S     H    ++ +    TN+  DH+D +        +  
Sbjct: 180 -------------------SDASFLH----LQPMVSVVTNIEADHMDTYGGDFEKLKSTF 216

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP    A++  DD   +E++ +                   L  V   +     
Sbjct: 217 IDFLHNLPFYGVAVMCIDDPVIRELLPKVGR-KIVSYGFSEDADIQALNFVQQGYRSHFT 275

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG- 350
                  D + +  LPGE  V NAL A  +     I+   ++  L +   +  RF+ +G 
Sbjct: 276 LRREGVADIEVMVNLPGEHNVLNALAAIAVATEDEIEDEAIVRALAEFEGIGRRFQQLGS 335

Query: 351 --TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
             T+     +  DY H  + +   +K  R     + +V+        + +       ++ 
Sbjct: 336 FATSKGEVMLVDDYGHHPSEVTATIKAARLGWPDKRLVMIYQPHRYSRTRDLYDDFVEVL 395

Query: 407 LDLADIAIVTDDNPRSEDP 425
               D  I+ D     E P
Sbjct: 396 SQ-VDSLILLDVYAAGEAP 413


>gi|91205778|ref|YP_538133.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii RML369-C]
 gi|109892734|sp|Q1RHX0|MURC_RICBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91069322|gb|ABE05044.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia bellii RML369-C]
          Length = 478

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 136/429 (31%), Gaps = 68/429 (15%)

Query: 69  EAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             +VVSSA +  +      +    PI+        L            +  +AV+G+ GK
Sbjct: 74  SYVVVSSAINRNNPEVKEALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  + + +GL    I     I++ + +  L + + +      S  +        
Sbjct: 125 TTTTSLVACLFEAAGLHPTVI-NGGIINNRSTNAYLGSSNYLIAEADESDATFI------ 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          I       TN+  +H+DY++      NA  R F   LP    A+ 
Sbjct: 178 --------------SIPSTIAIITNIDPEHLDYYKDFDTLINA-FRSFITNLPFYGFAVC 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------ 300
             D    +E++            +      I    +          + +   +       
Sbjct: 223 CIDHKIVRELVNNITERKVITYGIDSDDAHITAFNISTDITSSTFDVKISLPNVSGVTII 282

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P PG   + N+L A  + + +      +         V  RF  V        + 
Sbjct: 283 EKITIPTPGRHNILNSLAAISVGVELDFGIKAIKNGFNSFKGVKRRFTKVA-EYNQASVI 341

Query: 360 VDYAHTSNSLEMILKNIRTI---TSGRIIVVF------GCGGDRDQGKRPIMGKIALDLA 410
            DYAH    ++  L   + I     G++I +F            D   R        D A
Sbjct: 342 DDYAHHPEEIKATLSTAKNIANKQHGKVIAIFQPHRYSRMQHLFDDFMR------CFDDA 395

Query: 411 DIAIVTDDNPRSEDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           D+  +TD     E P          + I     H    F+ K +  +++   +   +  D
Sbjct: 396 DLLYITDVYAAGESPIEGISGQSLIDNIIKLKYHNQANFLAKLD--DSLEVIMNKASPGD 453

Query: 461 VLVVAGKGH 469
           ++++ G G+
Sbjct: 454 MIIMMGAGN 462


>gi|221231502|ref|YP_002510654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
 gi|254766058|sp|B8ZMZ6|MURD_STRPJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|220673962|emb|CAR68471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
          Length = 450

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 120/389 (30%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 TSKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +     +D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|189501426|ref|YP_001960896.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           BS1]
 gi|226711862|sp|B3EQB7|MURC_CHLPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189496867|gb|ACE05415.1| UDP-N-acetylmuramate/alanine ligase [Chlorobium phaeobacteroides
           BS1]
          Length = 465

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 121/430 (28%), Gaps = 56/430 (13%)

Query: 56  GHLFIPQAIAQGAE-AIVVSSAYSL---QDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
           GH     A   GA   +V SSA +    ++ +A ++   P++  D   + L        G
Sbjct: 57  GH----SAENIGACDVVVYSSAVAASENEEVAAALQKGIPVIKRD---EMLGELMRYKSG 109

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 + V GT GK++  + +  +   +G S   +                      + 
Sbjct: 110 ------ICVAGTHGKTTTTAMIATMLIGAGESPTVM----------------------IG 141

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                L    +            +  R       + +  N                    
Sbjct: 142 GISDDLKGSTMVGSGKYMVIEADEYDRAFLKLTPSLAVINSLEMEHTDTYADIEALRDAF 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   +P         D    ++++ R +                   ++     +  V
Sbjct: 202 VAFANKVPFYGRVFCCVDWPEVRKIIPRMNRRLFTYGIEESADLMARDIQIVGHETRFTV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               + +        PG   V+NAL A    + +G+    ++  L     +  RF+ +  
Sbjct: 262 DY-QKQEMARVSIAAPGRHNVHNALAAIATGLEMGLPVDSIVSGLASFSGMRRRFQILYG 320

Query: 352 NSRGGRIYVDYAHTS-NSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409
            + G  I  DYAH        +           +I VF      R        G  AL  
Sbjct: 321 RAGGPVIVDDYAHHPSEVKAAVKAARAGWPEHEVIAVFQPHLFSRTTAFADEYG-WALSN 379

Query: 410 ADIAIV---------TDDNPR--SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           AD   V         T D P    E   +  A ++ G        +R E   T       
Sbjct: 380 ADRVCVADVFAAREKTADYPGVSGELVAE--AALMAGAQQVSFIPDREELCTTLQGYCVP 437

Query: 459 QDVLVVAGKG 468
            ++L+  G G
Sbjct: 438 GNLLLCMGAG 447


>gi|124266216|ref|YP_001020220.1| cyanophycin synthetase [Methylibium petroleiphilum PM1]
 gi|124258991|gb|ABM93985.1| cyanphycin synthetase [Methylibium petroleiphilum PM1]
          Length = 855

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 123/369 (33%), Gaps = 24/369 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++ A  +  +   SGL     G T+T   + +  ++ +        A + L
Sbjct: 472 VAVTGTNGKTTTARLIAHLFATSGLRV---GMTNTDGVYVEGRQIDSGDCSGPKSARNVL 528

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI---DYHQTQQA--------- 225
               V     E +  G+ +  L   +      TN+G       +Y  T +          
Sbjct: 529 MHPDVDAAVFETARGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYITTVEDLAVLKRVIV 588

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A+           + A +               +            + ++++    +
Sbjct: 589 QNVAQSGYAVLNATDVNVAAMAGTCPGDVIFFAADRHHPVMATHRAQGKRTVYVEGDALV 648

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +      +  +D          FQV NA+ A      +G+D   V   L         
Sbjct: 649 AAQGAWREKLLLRDIPLTRGGTIGFQVENAMAAVAAAWGVGLDWDTVRRGLASFVNDADN 708

Query: 346 F--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
               F   + +G  +  DY H  +++  ++  +  + + R  VV    GDR         
Sbjct: 709 APGRFNVMDFKGATVIADYGHNPDAMRALVAAVDAMPATRRAVVISGAGDRRDDDIREQT 768

Query: 404 KIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIEML 456
           +I     D  ++  D   R     ++ A +  G+ G     +  E      AI TA++ L
Sbjct: 769 QILGAAFDDVLLYQDAAQRGRADGEVIALLREGLRGATRTRHVEEIHGEFIAIDTALDRL 828

Query: 457 NKQDVLVVA 465
              ++ +V 
Sbjct: 829 KPGELCLVL 837


>gi|317124646|ref|YP_004098758.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Intrasporangium
           calvum DSM 43043]
 gi|315588734|gb|ADU48031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Intrasporangium
           calvum DSM 43043]
          Length = 496

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 116/365 (31%), Gaps = 46/365 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L VTGT+GK++  + +  I + SGL +   G   T    A  +    P P  +    
Sbjct: 130 APWLTVTGTNGKTTTVNMLASILRASGLRATSAGNVGTPILEAVLH----PEPYDV---- 181

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     ++VE SS  L   R   I  +A +  N+  DH+D+H +   Y  AK +++
Sbjct: 182 ----------LAVELSSFQLHWQR--SISAVASAVLNVAPDHLDWHGSYAEYLRAKGKIY 229

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-------LKKVCAIHN 287
           +         +            +          + G     +          +      
Sbjct: 230 DNTHLACVYNVADIQTEQLVMEAEVVEGCRAVGFTTGIPAPSMIGVVDDVLADRAFVEQR 289

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           ++         D     P      + NAL AA L  A G+    V + L        R  
Sbjct: 290 QRSAAELCTLDDLRGDAPSVAPHYLANALAAAALARAYGVGPLAVRDGLRAFRPDRHRIA 349

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V T      +    A  +++    L +  +      +V    G  +      ++ ++A 
Sbjct: 350 EVATVRGVRWVNDSKATNTHAAAAALTSFDS------VVWIAGGLLKGADVDSLVEEVAS 403

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GN-----RIEAIRTAIEMLNKQD 460
            L  + ++  D  R      I   +    P        +         +  A  + +  D
Sbjct: 404 RLRGVVLIGADRAR------IAEALARHAPDVPVIDLPDTDTGVMDLVVTHAARLAHPGD 457

Query: 461 VLVVA 465
           V+++A
Sbjct: 458 VVLLA 462


>gi|309809483|ref|ZP_07703341.1| bifunctional protein FolC [Lactobacillus iners SPIN 2503V10-D]
 gi|308170155|gb|EFO72190.1| bifunctional protein FolC [Lactobacillus iners SPIN 2503V10-D]
          Length = 420

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DN + + P  I A+        ++  N   A++ A +     D++VV G
Sbjct: 362 DNLQRKLPVAILAQNFKN--HVMQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|227431980|ref|ZP_03914000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352265|gb|EEJ42471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 449

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 113/352 (32%), Gaps = 41/352 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AVTG++GK++  S ++ + +  G +    G      S      LT    + L  
Sbjct: 109 FNGRLIAVTGSNGKTTTTSLIRDMLKADGQNVITAGNIGVPVSEVV-FDLTREDTLLL-- 165

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                          E SS  L    L  I+      TN+  +H+DYH+T+  Y  AK  
Sbjct: 166 ---------------ELSSFQLL--GLPDIQPDIALVTNIFSNHLDYHKTRANYVAAKFH 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +       +   +            ++  N     +    + K          +      
Sbjct: 209 ITRHQNANQYLVLNADGQDT-----EKFKNETEAQVLEFSRTKQHFPVAFSNGNLTLTDE 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I +  KD   + P        N L A  +    G+    + E L+    V  R +++ T 
Sbjct: 264 IVMPTKDIKLVGPH----NQENILAAVTVANLAGVSKPAIREVLKTFSGVAHRLQYLFTV 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                     A     +E     + +     I +  G     D  +  ++  +    A I
Sbjct: 320 GDVKYYNDSKAT---DIEATQTALDSFDCPTIWIGGGLERGDDLER--LLPNLKNVKAVI 374

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A+        E  +KI           I   +   A   A+++ +  DV+++
Sbjct: 375 AV-------GETQQKIVTLARKAGKPVIAVTDVEHAASVAVQLASPGDVVLL 419


>gi|26988072|ref|NP_743497.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida KT2440]
 gi|37999638|sp|Q88N75|MURC_PSEPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24982796|gb|AAN66961.1|AE016324_11 UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida KT2440]
 gi|313500436|gb|ADR61802.1| MurC [Pseudomonas putida BIRD-1]
          Length = 482

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 140/440 (31%), Gaps = 61/440 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IFV        GH     A    A+ +VVSSA +  +          I VV    + L+ 
Sbjct: 64  IFV--------GHR-AENAAT--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAE 111

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIG---PTSTISSFAQDN 160
                +G      +AV GT GK++  S +  +    G   +F IG     +  ++    +
Sbjct: 112 LMRYRHG------VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTS 165

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           R                             S     H    ++ +    TN+  DH+  +
Sbjct: 166 RYLIAEADE---------------------SDASFLH----LQPMVAVVTNIDADHMATY 200

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +            F   LP    A++  DD   +E++ +             +     + 
Sbjct: 201 EGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVREILPQVKRPTV-TYGFSEEADIRAIN 259

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                       +  + +  +    +PG   V NAL    +    GI    +++ L    
Sbjct: 260 VRQQGMQTHFTVLRRDREPLEVSVNMPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQ 319

Query: 341 VVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            V  RF+  G          +  DY H    +  ++K +R     R +V+        + 
Sbjct: 320 GVGRRFQVYGELPVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRT 379

Query: 398 KR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEA 448
           +       ++  D A++ ++ +  P  E+P       ++   I   G    I      E 
Sbjct: 380 RDLYDDFVQVLGD-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAEL 438

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
                 +L   D+L+  G G
Sbjct: 439 APLVKPLLRAGDILLCQGAG 458


>gi|331701059|ref|YP_004398018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128402|gb|AEB72955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 459

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 133/363 (36%), Gaps = 43/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQ--ICQRSGLSSFQIGPTSTISSFAQDNR 161
             AS++       I+ VTG++GK++  + + +    +R+   ++  G     ++     +
Sbjct: 104 ELASQITD---AEIIGVTGSNGKTTTVTMITEILNQERAKGHAYAAGNIGISATETAK-K 159

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            T    I                  +E SS  L    +  +       TN+  +H+DYH+
Sbjct: 160 ATADDTI-----------------VMELSSFMLL--GIKTLHPHVAVLTNIFSNHLDYHK 200

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T++ Y NAKMR+     P++   + +  D +   + KR+              K  + K 
Sbjct: 201 TRENYVNAKMRITMNQTPEDFFVVNFDSDEWRG-LSKRSAAKVVPFARTTEIDKGAYEKN 259

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               +N + +  + + K       +PG+  V NAL A      +G  +  +   LE    
Sbjct: 260 GKLYYNDEFIMNAEDIK-------VPGKQNVENALAAIACAKVLGKSNLAITNVLETFTG 312

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R +FV   +         A     +E     +      + +V+   G DR      +
Sbjct: 313 VRHRLQFVLEANGRKFYNDSKAT---DIEATQMALEGFD--KPVVLLAGGLDRGYTFDKL 367

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           + +    +    +  +     ED  K       GI    +  N  EA+  A    ++ D+
Sbjct: 368 IPQFKEHVKAAVLFGETADLLEDSLK-----KAGIQNIQKVDNIDEAVPAAYSFSDEGDI 422

Query: 462 LVV 464
           +++
Sbjct: 423 VLL 425


>gi|327330615|gb|EGE72361.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL097PA1]
          Length = 498

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 82/303 (27%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L    L  +   A    +        H++      A  +  
Sbjct: 175 AMADEINYDVFAVELSSFQLHWSNLLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 235 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVE 294

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 295 QRATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 355 HQAGGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 409 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 463 VVA 465
           ++A
Sbjct: 463 LMA 465


>gi|251792024|ref|YP_003006744.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533411|gb|ACS96657.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 476

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 141/434 (32%), Gaps = 52/434 (11%)

Query: 51  GNKEDGHLFIPQAIAQ--GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           G K     FI  +     GA  +V+SSA      +  A  ++  P++      + L+   
Sbjct: 63  GAKV----FIGHSAENIIGASVVVISSAIHGDNPEVMAAKKARIPVIQRA---QMLAELM 115

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
              +G      +AV GT GK++  + V  I  ++GL    +     + S   +  L    
Sbjct: 116 RFRHG------IAVAGTHGKTTTTAMVSMIYAQAGLDPTFV-NGGLVKSAGTNAHLG--- 165

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                             ++    S     H    ++ +    TN+  DH+D +      
Sbjct: 166 -------------CSRYLIAEADESDASFLH----LQPMISIVTNIEPDHMDTYHGDFDE 208

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
                  F   LP    A++ ADDA    ++ +                 I   +     
Sbjct: 209 MKQTYVNFLHNLPFYGLAVLCADDADLMSLVPQVGRQVITYGFSENADYRIEDYQQTGFQ 268

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 I   G+  D L  +PG     NA  A  +    GI +  +L  L        RF
Sbjct: 269 GHYT-VICPNGERIDVLLNVPGRHNALNATAALVVAKEEGIKNEAILAALADFQGAGRRF 327

Query: 347 EFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PI 401
           + +G   R      +  DY H    + + ++  R     + +V+        + +     
Sbjct: 328 DQLGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDD 387

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIE 454
             ++     D  I+ D  P  E P      + +   I + G    I   +  +      +
Sbjct: 388 FVQVLSQ-VDALIMLDVYPAGESPIVGADSKALCRSIRNLGKVDPILVSDTAQLGDVIDQ 446

Query: 455 MLNKQDVLVVAGKG 468
           ++   D+++  G G
Sbjct: 447 IIQDGDLILAQGAG 460


>gi|210634199|ref|ZP_03298039.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
 gi|210158889|gb|EEA89860.1| hypothetical protein COLSTE_01961 [Collinsella stercoris DSM 13279]
          Length = 474

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 131/414 (31%), Gaps = 51/414 (12%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +VVS+A    +           P+         L          +    +A  GT GK+
Sbjct: 79  VVVVSTAIPETNPELMRARELGIPVWHRAKMLSALG---------YGRTTVAAAGTHGKT 129

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +S V  +  R G   SF IG    +  +  + +        +    S  S        
Sbjct: 130 TTSSMVATMLDRMGLDPSFLIG--GVVEGYGTNGKNGDGEYFVVEADESDSSFLY----- 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  DH+D++ + +   +     F  L+ ++   I+
Sbjct: 183 ---------------LNPHVVIVTNVEADHMDHYSSLEEIEDT-FCAFMNLVGEDGTVIV 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFLFP 305
             +D +  E+ +    A                            VT+         +  
Sbjct: 227 CGEDPHLVELARSTGRAVLTYGEGEGFDVSCAPMASSHTFGTDFSVTLPDGAVRTVAIKN 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            PG   + NA  A      +G+D+      L        RF  VG  +RG  +  DY H 
Sbjct: 287 NPGRHNMLNATAALASAYVLGLDTEDAARALSTFEGARRRFTHVG-ETRGVMLVDDYGHH 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSE 423
              ++  L   +++   ++ VVF     R    + +        AD    ++ D  P  E
Sbjct: 346 PTEVKATLHAAKSLDFAKVAVVF--QPHRYTRLQALCDDFVDAFADADTVVLIDVFPAGE 403

Query: 424 DP------EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
            P      + +  +I    P        +  +A+ T ++  +   D+L+  G G
Sbjct: 404 MPIPGVTSKMLADKIRAAHPDKQVRYVAD-HQALMTCLDEVVQAGDLLITMGAG 456


>gi|190892582|ref|YP_001979124.1| UDP-N-acetylmuramate--alanine ligase [Rhizobium etli CIAT 652]
 gi|190697861|gb|ACE91946.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 471

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 88/281 (31%), Gaps = 17/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNAL 316
                              ++    +   V I                P+PG   + NA 
Sbjct: 233 RKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHNISNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI SA + + L     V  RF   G    G +I+ DY H    ++ +L+  
Sbjct: 293 AAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK------I 428
           R    GRII V      R      +  + A     AD   +       ED  +      +
Sbjct: 352 REACKGRIIAV--HQPHRYSRLASLFEEFAACFNDADSIFLAPVYAAGEDAIEGVDSTSL 409

Query: 429 RAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            + I  G        +  E + +   E+    D +V+ G G
Sbjct: 410 VSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|150397282|ref|YP_001327749.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium medicae
           WSM419]
 gi|166224733|sp|A6UB84|MURC_SINMW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150028797|gb|ABR60914.1| UDP-N-acetylmuramate--alanine ligase [Sinorhizobium medicae WSM419]
          Length = 471

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 89/285 (31%), Gaps = 17/285 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +  A  +A  +  E +       +          V K   
Sbjct: 173 LPADIAVVTNIDPEHLDHYGSFDAVRSAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNAL 316
                           H  ++    +   + I         +  D   P+PG   V NA 
Sbjct: 233 RKVVTYGENPQADVRFHNIRMDGATSIFDIEIRRRRTGQVIEIKDLRLPMPGRHNVSNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI    +   +     V  RF   G    G RI+ DY H    ++ +L+  
Sbjct: 293 AAVAVAQRLGIKPEDIARGIASFGGVKRRFTLTG-EWNGARIFDDYGHHPVEIKAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R    GRI+ V      R      +          AD  ++       E+       E +
Sbjct: 352 REACQGRIVAV--HQPHRYSRLSSLFEDFTSCFNDADTILLAPVYSAGEEAIDGVNSEAL 409

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
              I           +  EA+   + ++    D +V+ G G  T 
Sbjct: 410 VNRIKAAGHRDARHISGQEALAPVVAKIAQPGDFVVLLGAGSITY 454


>gi|51473445|ref|YP_067202.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia typhi str.
           Wilmington]
 gi|59798218|sp|Q68XC2|MURC_RICTY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51459757|gb|AAU03720.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia typhi str.
           Wilmington]
          Length = 498

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 72/437 (16%), Positives = 139/437 (31%), Gaps = 61/437 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    Q I      +V+SSA   +  +    +    PI+        L           
Sbjct: 64  GH--AKQNIKN-VSYVVISSAIHQNNPEIKEALERKIPIIRRAEMLAELMRL-------- 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G+ GK++  S +  + + +GL    I     I++ + +  L + + +     
Sbjct: 113 -KCSVAVSGSHGKTTTTSLIACLFEAAGLYPTVI-NGGIINNKSTNAYLGSSNYLIAEAD 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  +                       I       TN+  +H+DY+Q  +    A  R 
Sbjct: 171 ESDATFIH--------------------IPSTIAIITNIDPEHLDYYQDFEILIGA-FRS 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+   D    ++++            +  +   I    +          +
Sbjct: 210 FITNLPFYGFAVCCIDHKIVRKLVDDITERKIITYGIDAEDAHIIAFNINTDIASSTFDV 269

Query: 294 SVEGKDF-------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +   +            P PG   + N+L A  + I +      +         V  RF
Sbjct: 270 KISLPNVLGTTIIEKITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRF 329

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGK---RP 400
             V        I  DYAH    ++  L   + I    +G++I +F       + K     
Sbjct: 330 TKVA-EYNQAVIIDDYAHHPEEIKATLATAKNIANQQNGKVIAIF-QPHRYSRIKYLFDD 387

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII--HGIPGFIEKGNRIEAIRTA 452
            M   A   ADI  +T+     E P      + +  ++                + +   
Sbjct: 388 FMLCFAD--ADILYITNIYAAGEKPIEGITGQSLVDKMTQNKYHDKANFLAELDDVVSVI 445

Query: 453 IEMLNKQDVLVVAGKGH 469
           I+     D++++ G G+
Sbjct: 446 IDHAASGDMIIMMGAGN 462


>gi|254463263|ref|ZP_05076679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2083]
 gi|206679852|gb|EDZ44339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 466

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 117/391 (29%), Gaps = 34/391 (8%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQ 134
           Y   +          + V ++   F   FA+  +        ++AVTG++GKS+ ++ + 
Sbjct: 79  YPTPNPVIKEALQMGVPVDNDISLFFRSFATSEWDNLDVTPRVVAVTGSNGKSTTSALIH 138

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + + +   +   G                   + L+   + L+      V+V  +    
Sbjct: 139 HVLEHANRPTQLAGNIGRGVLDIDPAIDGEVVVLELSSYQTDLARALTPDVAVFTNLSPD 198

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              R  G+     +   L  +              +  +  +       A   A+     
Sbjct: 199 HLDRHQGMGGYFAAKRRLFAEGGP----------ERAIIGIDEDEGLYLAGQMAEGPQDD 248

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            V++ +                  L +         + +            LPG     N
Sbjct: 249 RVIRISVERKLTDFGWAVFANKGFLSEYRKGRQIGSIDLRAIKG-------LPGAHNHQN 301

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  A  +C  +G+   ++         +P R + V        +    A   +S    L 
Sbjct: 302 ACCAYAVCRTLGLAPRVIEAGFASYPGLPHRSQIVADVDGVTYVNDSKATNVDSAAKALG 361

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
             + I          CGG   +G    +   A ++    ++  +  R        A  + 
Sbjct: 362 AFKKIRW-------ICGGLEKEGGVEALANAADEVLKAYVIGREASRF-------AMQLA 407

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           G+       +  EA+  A+E  ++ + +++A
Sbjct: 408 GV-KTEVCTSMEEAVARAMEDSSEGETVLLA 437


>gi|254362461|ref|ZP_04978569.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
 gi|153094053|gb|EDN74965.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
          Length = 475

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 132/420 (31%), Gaps = 52/420 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVT 121
            GA  +VVS+A    +    A   +  P++     R+   L+      +G      +A+ 
Sbjct: 76  AGASVVVVSTAIDETNPEIIAAREARIPVI-----RRAEMLAEIMRFRHG------IAIA 124

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  + +  I       +                +           A +  S   
Sbjct: 125 GTHGKTTTTAMISMIYTE----AKLDPTFVNGGLVKSTGKNAHLGASRYLIAEADESDAS 180

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             H+    S                   TN+  DH+D +             F   LP  
Sbjct: 181 FLHLQPMVS-----------------VVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFY 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++ ADD    E+  R                   ++       ++  T+     +  
Sbjct: 224 GLAVMCADDETVMEIAPRVGRQVITYGFSENADY--RIEDYQQTGFQEHYTVVCPSGERI 281

Query: 302 FLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---R 357
            +   +PG     NA  A  +    GI +  +L  L        RF+ +G+  R      
Sbjct: 282 DVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFIRPNGKIM 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIV 415
           +  DY H    +++ ++  R+   G+  VV      R    R +  +    L+  D  I+
Sbjct: 342 LVDDYGHHPTEVDVTIQAARSGWEGKR-VVMIFQPHRYSRTRDLFDEFVQVLSKVDALIL 400

Query: 416 TDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D     E P      + +   I + G    I   +  +      +++   D+++  G G
Sbjct: 401 LDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|118443545|ref|YP_877808.1| folylpolyglutamate synthase [Clostridium novyi NT]
 gi|118134001|gb|ABK61045.1| folylpolyglutamate synthase [Clostridium novyi NT]
          Length = 436

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 9/159 (5%)

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
                L A      +G+           L     GRFE +   +R   + +D AH  + +
Sbjct: 269 NCATVLYAINELKKMGVSIKDTSIINGLLKVKWIGRFEIL---NRNPLVILDGAHNIDGI 325

Query: 370 EMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEK 427
           + + +++ T    + ++++ G   D+       M K+    A + I VT  + R+E   +
Sbjct: 326 KSLKESVDTYADYKDMVLILGILNDKQVE---DMIKVITPNAKMVICVTPHSERAEIAGE 382

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   +    P  I   +   A  TA++  +  D+L+++G
Sbjct: 383 LMKSVKQYNPNCIAIEDYKIAYETALKYCDCDDLLLISG 421


>gi|66047328|ref|YP_237169.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500775|sp|Q4ZNZ1|MURC_PSEU2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|63258035|gb|AAY39131.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 486

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 136/422 (32%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGHVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  ++       I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQSGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|315612789|ref|ZP_07887700.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314899|gb|EFU62940.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
          Length = 450

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 126/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQTATAKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTQATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAASEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSSFGGVKHRLQFVDEIQGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|304396923|ref|ZP_07378803.1| UDP-N-acetylmuramate [Pantoea sp. aB]
 gi|304355719|gb|EFM20086.1| UDP-N-acetylmuramate [Pantoea sp. aB]
          Length = 450

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 103/358 (28%), Gaps = 34/358 (9%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              +LAV GT GK++ A     I +       F IG        +     +    I   +
Sbjct: 102 DRWVLAVAGTHGKTTTAGMAAWILEACALEPGFIIGGVPGNFDVSAKLGKSPFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D     +A    +  
Sbjct: 162 YDCAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDLRAIQK-QFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               ++P +   ++   D      +K+    GC               K           
Sbjct: 206 HLVRIVPGQGKILLPEHDPN----LKQVMAMGCWSEQESVGEHGRWQAKKLTNDASHWEI 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                K  +  + L GE  ++N L+A      +G+      + L        R E  G  
Sbjct: 262 WLDGEKVGEVNWGLVGEHNMHNGLMAIAAARHVGVKPEDAGQALNTFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--- 409
               ++Y D+AH   ++   L  +R+   GR  ++       +  K   MG    DL   
Sbjct: 321 VNSIKVYDDFAHHPTAILATLAALRSKVGGRARILAVLEPRSNTMK---MGVSKNDLAPS 377

Query: 410 ---ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              AD   +   +     P ++       IP      +    +   ++     D ++V
Sbjct: 378 LARADEVFLFQPHH---IPWQVSDVAEACIPPAHWSADIDTLVEMVVKAAQPGDTILV 432


>gi|282878010|ref|ZP_06286818.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccalis ATCC
           35310]
 gi|281299845|gb|EFA92206.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccalis ATCC
           35310]
          Length = 457

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 109/365 (29%), Gaps = 42/365 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                L   GT GK++ ++    I  +S +            ++  +  L+         
Sbjct: 110 QTHKGLCFAGTHGKTTTSTMCAHIMHQSHVDCNAF-LGGISKNYGTNYILS--DASDYIV 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +    +                     ++      T+   DH+D + T++AY  +   
Sbjct: 167 IEADEFDRSFHW-----------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +          A   +    MK A   G  +          H + +   +      
Sbjct: 210 YTTLIQ------PGGALIIHRDLEMKPAVQEGVSMYDYSRDKGDFHAENIEIKNGHITFD 263

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                ++ +      P    + N + A  +    G  +  +   +   H V  RF+F   
Sbjct: 264 FISPLENVEGVELGQPIPINIENGVAAMAMAQLNGCTAEELRYGMSTYHGVERRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
           N R   +  DYAH    +    K++R +   R +          R +       K    L
Sbjct: 324 NDR-HVLLSDYAHHPKEIYQSAKSLRELYHDRKVTAIFQPHLYTRTRDFYKEFAKALSQL 382

Query: 410 ADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            D  I+ D  P  E P K      I  E+       I K   ++ ++         DVLV
Sbjct: 383 -DEVILCDIYPAREQPIKGVTSQLIYDELTCKEKSMIHKEEVLDLVKR-----RDFDVLV 436

Query: 464 VAGKG 468
           + G G
Sbjct: 437 ILGAG 441


>gi|229098931|ref|ZP_04229866.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-29]
 gi|228684429|gb|EEL38372.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-29]
          Length = 433

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 93/309 (30%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +        V  E    G      + I  I    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKINFCDVVLFETGLGGRFDS-TNVIHPILTIITNIGHDHMHILGD 178

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                  +     +            DD   + + K A      +  +G     +H +  
Sbjct: 179 TLGEIAYEKAGIIK--SGVPVITGVQDDEALQVIQKVAKENHANLYELGKHFTALHKQSN 236

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKL 339
                          +D         +    +  + A + +   +        +      
Sbjct: 237 EDGERFDFACPFASFEDVRMSMKGVHQVGNASLALMAIMYLKTYVSFLIEEEEIRAGLHE 296

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGK 398
               GRFE + +      I +D AH    +E ++K +      + I+V F   GD+    
Sbjct: 297 AYWIGRFEKLKS---NPDIIIDGAHNPEGIESLVKTVEAHYKDKNIIVLFTALGDKQLHN 353

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              M      +AD  I T     R+   +K+ A         I   +  EAI T +EM+ 
Sbjct: 354 ---MVGQLETIADEIIFTTFAFDRAISADKLAAHSQK--KSKIVFEDWKEAIDTKVEMIG 408

Query: 458 KQDVLVVAG 466
             DV ++ G
Sbjct: 409 GNDVFIITG 417


>gi|269792481|ref|YP_003317385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100116|gb|ACZ19103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 462

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 112/348 (32%), Gaps = 31/348 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG++GK++  S +  +   +G+S+   G          +   + P        +   
Sbjct: 111 VGVTGSNGKTTTTSILGHVLNAAGVSTAVAGNIG-------NPLGSVPLSGETPSLVVAE 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    H   EAS  G             G  TNL  DHID+H + + Y  AK RL E  
Sbjct: 164 LSSFQLHWCEEASFAG-------------GVVTNLAPDHIDWHGSYENYVLAKRRLIERT 210

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P     +  AD    +               V          +V  +     V      
Sbjct: 211 GPDGFAVVQLADLDILRGGSGSVRLYPLSWDKVEQGVHLDDAAQVALLLMNGSVRELFRF 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                L     E        A  +              + +    P R E VG       
Sbjct: 271 DQVRLLGRHNLENAAMALCAANLVL---NRPLNGEDGRIGEFMAPPHRCELVGRYGGVTF 327

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +         +    L++++    G  +++ G  G  +  +  ++ +   +    A++  
Sbjct: 328 VDDSKGTNVAATVTALRSLKCDPGGTKVILLGGRGKGEDYQ--VLAQTVSEECSYAVL-- 383

Query: 418 DNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E+ ++I   +   G   +   G+  EA+R A +   + D++++
Sbjct: 384 ---YGEEGDRIAEALSKAGFNRWSRVGSLDEAVRVAFQRTKEGDMILL 428


>gi|260220017|emb|CBA27134.1| UDP-N-acetylmuramate--L-alanine ligase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 401

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/286 (19%), Positives = 95/286 (33%), Gaps = 21/286 (7%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +  +    TN+  DH++ +             F   +P    AI+  DD   +++ ++ 
Sbjct: 93  NLLPVMAVVTNIDADHMETYGHDFGKLKKAFVDFLHRMPFYGAAILCTDDPAVRDICEQV 152

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFDFLFPLPGEFQVYNAL 316
                                V A+  +   T+         D + +  LPG   V NAL
Sbjct: 153 TCPITSYGFNEDAEV--RAVNVRAVGGQMHFTVQRRNGVVLPDMEVVLNLPGLHNVLNAL 210

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAHTSNSLEMI 372
            A  + + + I  A V++ L +   V  RF+  G  +        +  DY H    +   
Sbjct: 211 SAIAVAVELNIPDAAVVKALAEFKGVGRRFQRYGDLALPQGGTVTVIDDYGHHPVEMAAT 270

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKR---PIMGKIALDLADIAIVTDDNPRSEDP---- 425
           L   R    GR  +V      R    R       K+    AD  ++ +     E P    
Sbjct: 271 LAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVIGAGADAVLLAEVYAAGEAPIVAA 329

Query: 426 --EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
               +   +  G        + I A+ + AI+     DVL+  G G
Sbjct: 330 DGRSLARALRIGGKVEPLFVDDIAAMPQAAIDNARDGDVLMCMGAG 375


>gi|119897176|ref|YP_932389.1| UDP-N-acetylmuramate--L-alanine ligase [Azoarcus sp. BH72]
 gi|166222953|sp|A1K3U7|MURC_AZOSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119669589|emb|CAL93502.1| probable UDP-N-acetylmuramate-L-alanine ligase [Azoarcus sp. BH72]
          Length = 467

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 76/434 (17%), Positives = 134/434 (30%), Gaps = 59/434 (13%)

Query: 56  GHLFIP-QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     +A    A+A+VVS+A    +          I +V    + L+       G   
Sbjct: 56  GHDAANVEA----ADALVVSTAVKNDNPEVIAARARHIPIVPRA-QMLAELMRLKSG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S V  I    G           +++   + RL     +      
Sbjct: 108 ---IAIAGTHGKTTTTSLVASIL-AEGAMDPTFVIGGRLNAAGANARLGKGDFLVAEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH+D +    A        F
Sbjct: 164 SDASFL--------------------MLSPVISVVTNIDADHMDTYGHDFARLKQAFVDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + LP    A++  DD + + +M        R             + + A   +    + 
Sbjct: 204 LQRLPFYGVAVLCEDDPHVRSIMPLVSKQVVRYGLSETANI--RAENIRAEGGRMIFDVL 261

Query: 295 VEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                       +  LPG   V NAL A  +   + +    +++ L +   V  RF+  G
Sbjct: 262 RVNGSTTRLADVVLNLPGLHNVRNALAAIAVATEVQVPDEAIVKALAEFSGVGRRFQRYG 321

Query: 351 TNSRG----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
             +        +  DY H    +E  L   R    GR  +V      R    R       
Sbjct: 322 EVAAPSGGTFTLIDDYGHHPVEMEATLAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFV 380

Query: 407 LDLA--DIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGN---RIEAIRTAIE 454
             L+  D  ++ +     E P        +   +   G    +   +     +A+  A+ 
Sbjct: 381 KVLSTVDALLLAEVYAAGEAPIVAADGRALSRALRVAGKVEPVFVEDIGGMPQAVLEAV- 439

Query: 455 MLNKQDVLVVAGKG 468
                DV++  G G
Sbjct: 440 --RDGDVVITMGAG 451


>gi|331269099|ref|YP_004395591.1| folylpolyglutamate synthase [Clostridium botulinum BKT015925]
 gi|329125649|gb|AEB75594.1| folylpolyglutamate synthase [Clostridium botulinum BKT015925]
          Length = 439

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400
             GRFE +        + +D AH  + ++ + ++I        +I++ G   D+      
Sbjct: 304 WMGRFEILKK---NPLVVIDGAHNIDGIKKLKESINLYLEYKNVILILGILTDKQVEN-- 358

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M ++   +AD  I VT  + R+E   ++   +           +  +A   A++   + 
Sbjct: 359 -MVEVITPMADKVICVTPHSDRAEIATELMKIVKKYNEDCEAVESYEDAYMNALKYCEED 417

Query: 460 DVLVVAG 466
           D+L+V+G
Sbjct: 418 DLLLVSG 424


>gi|326333495|ref|ZP_08199736.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948695|gb|EGD40794.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
          Length = 488

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 117/386 (30%), Gaps = 71/386 (18%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                   +    LAVTGT+GK++    +  I + +GL S  +G                
Sbjct: 122 AWRLRDPDNAAPWLAVTGTNGKTTTVQMLDNILRTAGLRSVAVGNVG------------- 168

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                L    + +  +     +VE SS  L  H    +   A    N+  DH+D++ + +
Sbjct: 169 -----LPIVEAVMDPEPYDVFAVELSSFQL--HYTSSMAAEAAVVLNIAEDHLDWYPSME 221

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y  A  +       + +     AD+A    V +     G R +        +    V  
Sbjct: 222 EY--AADKGRVYEGVERACVYNVADEATMHLVEEADVVEGARAIGFTLGTPAVGQVGVVE 279

Query: 285 IHNKQQVTISVEGKDFDFLFPLPG-----EFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                +  I         L  +          V NAL AA L  A G+  A V + L+  
Sbjct: 280 DILVDRAFIEERQTSAAELCQISDLASSAPHYVQNALAAAALARAHGVSQAAVRDGLKSF 339

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS------------------ 381
                R E V        +    A   ++ +  L+    +                    
Sbjct: 340 RPDGHRIEVVAEVGGVTWVDDSKATNPHAAQASLQAYDPVIWIAGGLAKGARFDDLVASI 399

Query: 382 -GRIIVVFGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
             R+  V   G DRD      +       A D+ IV  D+P  E                
Sbjct: 400 HERLRAVILIGQDRDV-----IASALAAHAGDLEIVELDDPDGEAA-------------- 440

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVA 465
                  EA+  A  +    D +++A
Sbjct: 441 -----LAEAVEIAAALAKPGDTVLLA 461


>gi|325977740|ref|YP_004287456.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177668|emb|CBZ47712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 452

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 136/425 (32%), Gaps = 54/425 (12%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS------- 103
           G   D +      + +G + I  S    L D +  +    P +  DN     +       
Sbjct: 41  GKPFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNPMVARAIEKNIPV 100

Query: 104 ----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A  +       I+ +TG++GK++  + + +     G S    G     +S    
Sbjct: 101 ITEVELAYMISDAP---IIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFPASEV-- 155

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                             ++     + +E SS  L     D         TNL   HIDY
Sbjct: 156 ----------------AQTATDKDILVMELSSFQL--MGTDTFHPHIAVITNLMPTHIDY 197

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y  AK  + + +   +   + +  D  +KE+ ++         +          
Sbjct: 198 HGTFEEYVAAKWNIQKNMTADDFVVLNFNQD-LAKELAQKTAAQVVPFSTTEKVDGAYLD 256

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   +  +  S           +PG   V NAL    +    GI +  + E L   
Sbjct: 257 GDTLYFKGEAIMKAS--------EIGVPGSHNVENALATIAVAKLSGIANDAIKETLTHF 308

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R + +G  +         +     +    K +    + ++I++   G DR     
Sbjct: 309 GGVKHRLQALGGINGVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFD 364

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  I      + I+ +  PR      ++         +++  +  +A R A +     
Sbjct: 365 ELVPDITGVKL-MVILGESAPR------VKRAADKANVPYVDAKDVADAARIAYDKAEAG 417

Query: 460 DVLVV 464
           DV+++
Sbjct: 418 DVVLL 422


>gi|311898890|dbj|BAJ31298.1| putative UDP-N-acetylmuramate--L-alanine ligase [Kitasatospora
           setae KM-6054]
          Length = 468

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 146/424 (34%), Gaps = 46/424 (10%)

Query: 59  FIPQAIA---QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           F+  A      G  ++VVSSA    +    A      P++   +    L           
Sbjct: 57  FVGHAAEHLPAGTSSVVVSSAIRADNPELVAARERGVPVVHRSDALAALMG--------- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               LAV GT GK++  S +       G         +                  +  A
Sbjct: 108 GRRALAVAGTHGKTTTTSMLAVSLGELG----LEPSYAIGGDLDAPGSNAHHGAGEIFVA 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S +     + E +                    N+  DH   + + +    +    
Sbjct: 164 EADESDRSFHKYAPEVA-----------------IVLNVELDHHANYASIEEIHQSFETF 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVT 292
              + P  +  +    +   +   + A  AG  V++VG  +   + +  V A     +VT
Sbjct: 207 VGRIQPGGTLVVSADHEGARELTRRVAGRAGLNVVTVGAAEDADVRVLAVAAHGMTSEVT 266

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           + + G+   F   +PG    +NA+ A    +A+G+ +  + + L     V  R +  G  
Sbjct: 267 VELGGERLVFTVSVPGRHYAHNAVAALAAGVALGVPAEGLAKALGAYTGVRRRLQLKG-E 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
           +RG ++   YAH    +   L+ IR     GR++VVF      R Q     MG +AL LA
Sbjct: 326 ARGTQVIDSYAHHPTEMAADLEAIREAAGAGRVLVVFQPHLFSRTQQLAEEMG-LALALA 384

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D ++V D  P  EDP      E I             + +   A      +    D+++ 
Sbjct: 385 DASVVLDIYPAREDPIPGVTAELIIDAARRAGADVRAEHDFAAAPAVLAALAAPGDLVLT 444

Query: 465 AGKG 468
            G G
Sbjct: 445 MGAG 448


>gi|194397716|ref|YP_002037343.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae G54]
 gi|226722946|sp|B5E2Z8|MURD_STRP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4009480|gb|AAC95449.1| D-glutamic acid adding enzyme MurD [Streptococcus pneumoniae G54]
 gi|194357383|gb|ACF55831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae G54]
          Length = 450

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIATDKNTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH   + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLVKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|317507070|ref|ZP_07964833.1| FolC protein [Segniliparus rugosus ATCC BAA-974]
 gi|316254645|gb|EFV13952.1| FolC protein [Segniliparus rugosus ATCC BAA-974]
          Length = 462

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + +      +  D AH  +    +   +     +     V    GD+D   R +
Sbjct: 320 PGRLERMPSGPGEPLVLADAAHNPHGATALASALAEDFPNTPFHGVLSVMGDKDV--RGV 377

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNK- 458
           +  +   LA + +  + +PR+    ++             + + +  EA+ TA E+    
Sbjct: 378 LEALKPALASVVVTDNGSPRALPAAELAELARTVFEPKRVVVQPDFAEAVGTAKELAAPK 437

Query: 459 QDVLVVAG 466
            + +++ G
Sbjct: 438 GEGVLITG 445


>gi|326315568|ref|YP_004233240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372404|gb|ADX44673.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 672

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 124/384 (32%), Gaps = 47/384 (12%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           ++L A R    +   +LA+TGT+GK++V S    + + +G S    G             
Sbjct: 273 MALAALRESHGYAPAVLAITGTNGKTTVTSLTGLLVECAGRSVAVAGNIGPTLLDTLGRH 332

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           L       L                +E SS  LD     G +  A +  N+ +DH+D+H 
Sbjct: 333 L---DADTL-----------PQAWVLELSSFQLD--GATGFEPTAATVLNITQDHLDWHG 376

Query: 222 TQQAYFNAKMRLFEE-------------LLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             QAY  AK R+F +             +     P  +       +  +    +   R  
Sbjct: 377 DMQAYARAKARIFGQSGLMVLNREDAAVMDMLPPPVRVKLQKPQLRAHVTFGADMPQRPG 436

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE---------FQVYNALVAA 319
             G +        V A  + +    +    + D                     NAL A 
Sbjct: 437 DFGIETVNGMAWLVRAQESDETAKRTRSHAEEDLHIQRLMPADALRIRGRHNAVNALAAL 496

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A G   A +L  L +    P R E +G  +              +       +  +
Sbjct: 497 ALAHAAGCPFAPMLYALREYRGEPHRVEPLGRVNEVEYFDDSKGTNVGATVA---ALGGL 553

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            + R +VV   G  + Q   P+           A++        D  +IRA +       
Sbjct: 554 GADRRVVVILGGDGKGQDFSPL-AMPVSRYVRAAVLI-----GRDAPQIRAALRDAGVPL 607

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLV 463
           ++     EA+R A +  +  D ++
Sbjct: 608 VDAPTLPEAVRLAAQRAHAGDAVL 631


>gi|306829146|ref|ZP_07462336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
 gi|304428232|gb|EFM31322.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
          Length = 450

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQRGLLSGNIGYPASQV------------------AQTATAKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K         +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELATKTQATVVPFSTLEKVDGAYLEDGQLYFRGEVVMAASEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDEIKGIKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  I I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKRIVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVDAKDIADATRKAYELATQGDVVLL 421


>gi|295706761|ref|YP_003599836.1| folylpolyglutamate synthase [Bacillus megaterium DSM 319]
 gi|294804420|gb|ADF41486.1| folylpolyglutamate synthase [Bacillus megaterium DSM 319]
          Length = 432

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 15/166 (9%)

Query: 308 GEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                  AL    +C              +    +     GRFE V   +      +D A
Sbjct: 261 YHQVKNAALAVMAVCYLKEKKKLSIFKEQMIKGIQHTKWNGRFEIV---NEHPLTIIDGA 317

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPR 421
           H +  ++ +L  +R     R I +VF C  D+   +   M +    +A     T  D PR
Sbjct: 318 HNAEGIDSLLSTLRLHYEDRNIHLVFSCLNDKSADR---MVQELETIAVSITFTSFDFPR 374

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           +    ++     H      E  +  +AI    E    +QD++V+ G
Sbjct: 375 ARTAAELYEMSTHHNKHMDE--DWKKAIAYVKEKATGEQDMVVITG 418


>gi|257888485|ref|ZP_05668138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
 gi|257824539|gb|EEV51471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
          Length = 453

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH T++ Y  AK  L + +  ++   + 
Sbjct: 168 MELSSFQL--MGITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + + +R         +       ++       + K+++    E         +
Sbjct: 226 WNQSELQE-LAQRTKARVLPFSTKEVLEDGVYADDHAIYYRKEKIMEISELG-------V 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  +    GI +  + + L   H VP R ++VG            A   
Sbjct: 278 PGTHNVENALAAITVAKLYGISNEAIRQTLHLFHGVPHRTQYVGEIQGRKFYNDSKATN- 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + + +V+   G DR      ++  +    A I             +
Sbjct: 337 --ILATKMALSGFETAK-VVLLAGGLDRGNTFDELVPSLKGIKAMIVF------GQTKEK 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I A    GI   +   +  +A+  A+E     DV+++
Sbjct: 388 LIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILL 425


>gi|315653391|ref|ZP_07906313.1| tetrahydrofolate synthase [Lactobacillus iners ATCC 55195]
 gi|315489316|gb|EFU78956.1| tetrahydrofolate synthase [Lactobacillus iners ATCC 55195]
          Length = 420

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DN + + P  I A+        ++  N   A++ A +     D++VV G
Sbjct: 362 DNLQRKLPVAILAQNFKN--HVMQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|309805467|ref|ZP_07699512.1| bifunctional protein FolC [Lactobacillus iners LactinV 09V1-c]
 gi|308165118|gb|EFO67356.1| bifunctional protein FolC [Lactobacillus iners LactinV 09V1-c]
          Length = 365

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 250 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 306

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DN + + P  I A+        ++  N   A++ A +     D++VV G
Sbjct: 307 DNLQRKLPVAILAQNFKN--HVMQAVNVRSALKIARQNAKPDDLIVVTG 353


>gi|295398675|ref|ZP_06808699.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
 gi|294973110|gb|EFG48913.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
          Length = 462

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 126/423 (29%), Gaps = 60/423 (14%)

Query: 61  PQAI--AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFAS 107
            QA+     A  +      SL D         P +  +N     +             A 
Sbjct: 52  AQALIEENNARVVAGGHPVSLLDEDFAFMVKNPGIPFNNPMVVRAQEIGLPVYTDIELAD 111

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           ++       I+ +TG++GK++            G    +    +  S    +  + +   
Sbjct: 112 KMTD---ATIIGITGSNGKTTTT-------SLVGEMLGKAASLAGESYVGGNIGIPSLDI 161

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                      ++    + +E SS  L     D  +    + TN+   H+DYH +   Y 
Sbjct: 162 --------ASKAEADDRLILELSSFQL--MGTDAFQPHIAAITNIYAAHLDYHGSMDGYI 211

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +AK ++       +   +             R   A     S              + + 
Sbjct: 212 SAKWQITANQTTDDFLILNA---DQMDVFGDRTTKATVVPFSATTIQPDGAWFDQDSQNF 268

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                I +  KDF      PG   + N LVA  +   +GI +  +   +   H V  R +
Sbjct: 269 IWHDEIVLNRKDFFL----PGHHNLENMLVAVAIGKLLGISNEEIKNGVSTFHGVKHRLQ 324

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV             A  +++    L +         ++    G DR        G    
Sbjct: 325 FVAEIDGRRFYNDSKATNNDASITALDSFSQ--KQDNVIWLAGGLDR--------GNEVT 374

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDV 461
           +LAD      D  +        A+   G+          +     EA++ A +M    D 
Sbjct: 375 ELADH----MDRVKGMVVFGQAADKFAGLGQNKGLTAIQQVEWIEEAVKAAYDMSAPGDT 430

Query: 462 LVV 464
           +++
Sbjct: 431 ILL 433


>gi|4033456|sp|O51926|MURC_BUCAP RecName: Full=Putative UDP-N-acetylmuramate--L-alanine ligase;
           AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 132/425 (31%), Gaps = 49/425 (11%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ I++SSA      +  A  + N PIL     R  +     +      +  +AV+GT G
Sbjct: 77  ADFIIISSAIPSDNPEIKAAKKKNIPIL----LRAEMLQIFMQF-----KFGIAVSGTHG 127

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+++ + +  I  ++ L    I     I S     +L                       
Sbjct: 128 KTTLLAMIFDILNQNKLDPTVI-NGGLIKSINSHAKLG--------------------FS 166

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +           +       TN+  DHID +  +          F   +P    AI
Sbjct: 167 KYFIAEADESDGSFLCLNPTTAIITNIEPDHIDNYNGEFKLLKKTFLDFLNKIPSYGIAI 226

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  D+     ++ +                 I   K     +   +    +  + + +  
Sbjct: 227 LCTDNKAILNILPKIKCKVITYGFNKSAEFRITSYKQSDFISNFTLIRKKQLNNLEIILN 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------R 357
           LPGE    NA  A        I    + + L+       RFE+VG               
Sbjct: 287 LPGEHNALNATAAIAFATYQKIPDEKIYQSLKNFKGTSRRFEYVGKLFIKKKSIQNKSVM 346

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIV 415
           +  DY H    L   +K IR     + +++        + +       KI     D  ++
Sbjct: 347 LINDYGHHPTELSETIKTIRKSWPKKNLIMIFQPHRYTRTRNLYFDFIKILSQ-VDSLLI 405

Query: 416 TDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +    +E      D   + ++I       I   NR   +   +  LN  D++++ G G 
Sbjct: 406 LNVYSANESFISGADSFSLYSDIKKIKKNVILVTNRNLILNYLLPHLNGNDIILIQGAGD 465

Query: 470 ETVHI 474
               I
Sbjct: 466 IDTII 470


>gi|332799453|ref|YP_004460952.1| FolC bifunctional protein [Tepidanaerobacter sp. Re1]
 gi|332697188|gb|AEE91645.1| FolC bifunctional protein [Tepidanaerobacter sp. Re1]
          Length = 460

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 31/150 (20%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRP 400
            PGR E     S    I +D AH    ++ + + +    S R  I+V G   D+D     
Sbjct: 304 WPGRLEL---ISENPTILIDGAHNIAGIKTLKEALNQYYSNRKKILVTGILADKDY---K 357

Query: 401 IMGKIALDLADIAIVTDDN-PRS----EDPEKIRA--------------EIIHGIPG--- 438
            M +  + +ADI I T  N PR+    E  + I                +I   I     
Sbjct: 358 EMLRDIVPVADIIITTAPNNPRALTACELADIIAELFGDSVVQMNVKDLDIEKKISNNTA 417

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                +    +A++ A  + N +D++V AG
Sbjct: 418 IQVYAEEKIEDAVKLAKTLANSEDMIVFAG 447


>gi|307704498|ref|ZP_07641406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
 gi|307621911|gb|EFO00940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
          Length = 450

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALTKGIPVL----TEVELAYLISE------APIVGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TASDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K   +     +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELASKTQATVVPFSTLEKVDGAYLEDGQLYFRGEVVMAANEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDEIKGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVSYVDATDIADATRKAYELATQGDVVLL 421


>gi|225856379|ref|YP_002737890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae P1031]
 gi|225858514|ref|YP_002740024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae 70585]
 gi|254766057|sp|C1C648|MURD_STRP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766061|sp|C1CJF2|MURD_STRZP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722058|gb|ACO17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 70585]
 gi|225725603|gb|ACO21455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae P1031]
 gi|301793866|emb|CBW36259.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV104]
 gi|332204703|gb|EGJ18768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47901]
          Length = 450

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 TSKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|15902647|ref|NP_358197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae R6]
 gi|116515762|ref|YP_816097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae D39]
 gi|30316022|sp|Q8DQM2|MURD_STRR6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122279017|sp|Q04LK1|MURD_STRP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15458185|gb|AAK99407.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae R6]
 gi|116076338|gb|ABJ54058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae D39]
          Length = 450

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 130/427 (30%), Gaps = 59/427 (13%)

Query: 54  EDGHLF-----IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS--- 103
            DG  F         + +G + I       L D    +    P +  +N    K L+   
Sbjct: 38  NDGKPFEDNPAAQSLLEEGIKVITGGHPLELLDEEFALMVKNPGIPYNNPMIEKALAKRI 97

Query: 104 ------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
                   A  +       I+ +TG++GK++  + + ++   +G      G     +S  
Sbjct: 98  PVLTEVELAYLISEAP---IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQV 154

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                                +     + +E SS  L    +          TNL   HI
Sbjct: 155 ------------------AQIASDKDTLVMELSSFQL--MGVQEFHPEIAVITNLMPTHI 194

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           DYH +   Y  AK  +  ++   +   + +  D       K               G   
Sbjct: 195 DYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKTEATVVPFSTLEKVDG--- 251

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 A     Q+    E         +PG   V NAL    +     +D+  + E L 
Sbjct: 252 ------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRDVDNQTIKETLS 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               V  R +FV             +    + +  L           +V+   G DR   
Sbjct: 306 AFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSGF----DNSKVVLIAGGLDRGNE 361

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              ++  I   L  + I+       +  E+++         ++E  +  +A R A E+  
Sbjct: 362 FDELVPDITG-LKKMVIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELAT 414

Query: 458 KQDVLVV 464
           + DV+++
Sbjct: 415 QGDVVLL 421


>gi|298488533|ref|ZP_07006563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156874|gb|EFH97964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 448

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 127/361 (35%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+ S  +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPSDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+++++ G  G +      +  
Sbjct: 308 HRCQWLREHGGVHYYNDSKATNVGAALAAIEGLGSDIDGKLVLIAGGDG-KGADFSALRA 366

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +A +    A++        D E I   +   +P  +       A+  + ++  + D ++
Sbjct: 367 PVA-EHCRAAVL-----LGRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|168486808|ref|ZP_02711316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570252|gb|EDT90780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
          Length = 450

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIATDKNTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH   + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|86132605|ref|ZP_01051198.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
 gi|85816847|gb|EAQ38032.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
          Length = 445

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 119/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS+        I+ +TG++GK++       I +++G++    G               
Sbjct: 95  EFASQYTD---ATIVGITGSNGKTTTTMLTGFILEQAGINLGVAGNIGDS---------- 141

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++ + +    +E SS  LD   +           N+  DH+D +  +
Sbjct: 142 ---------YAKMVAQKEIDTYVLEISSFQLD--GIADFAPHIAVVLNVTPDHLDRYDYK 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A          +    I  ADD  S + + +       +     Q          
Sbjct: 191 FENYIASKFRIAMNQKETDYLIYDADDPVSVDWLNKHPVRSKLLPFSLTQEFENGAFIKD 250

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                Q    +      +      G+    NA+ A+ +   + I  A + E LE    V 
Sbjct: 251 NNLVVQIDNNTFTMTTNNLALK--GQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVE 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +    I    A     +      + ++    + +V G   D+    R +  
Sbjct: 309 HRLEQVLKINNVQYINDSKATN---VNATFYALDSMNDPTVWIVGGV--DKGNDYRDLYP 363

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I   +  I  +  DN      +K+ +   + +   +E  +  EA++ A ++  + D ++
Sbjct: 364 LINEKVKAIICLGVDN------QKLMSHFENMVDIIVETPSMTEAVKIAYKVAERGDNVL 417

Query: 464 V 464
           +
Sbjct: 418 L 418


>gi|319791666|ref|YP_004153306.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
 gi|315594129|gb|ADU35195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
          Length = 735

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 114/367 (31%), Gaps = 42/367 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAVTGT+GK++V +   Q+ +R+G S    G             +       L       
Sbjct: 346 LAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPTLLDTLAAHI---DAETL------- 395

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE- 236
                    +E SS  LD   + G +  A +  NL +DH+D+H    AY  AK R+F   
Sbjct: 396 ----PDVWVLELSSFQLD--GVQGFEPTAATVLNLTQDHLDWHGDMPAYAAAKARIFGAK 449

Query: 237 --LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ---------------GKFIHL 279
             ++     A + A       V  +       V                     G  +  
Sbjct: 450 GLMILNRDDAGVMAMLPPPVRVKLQRPQIRTHVTFGSAMPLRPGDYGIERINGIGWLVRA 509

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +      +++  +  E   F  L P               L       +A         
Sbjct: 510 LEADETQKRKRGAVVEEEIFFQRLMPADALRIRGRHNAMNALAALALATAADCPLGPMLY 569

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYA--HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +   R E            V+Y       ++   +  +  +   R +VV   G  + Q 
Sbjct: 570 GLREYRGEPHRVEPIALIDDVEYFDDSKGTNVGATVAALNGLGEDRRVVVILGGEGKGQD 629

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             P+   +A   A   ++        D   I A + +     +   +  EA++ A    N
Sbjct: 630 FEPLAAPVA-QHARAVVLI-----GRDAPLIEAALANTGVSLMHAASMDEAVKLAAARAN 683

Query: 458 KQDVLVV 464
             D +++
Sbjct: 684 PGDAVLL 690


>gi|306830842|ref|ZP_07464004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426865|gb|EFM29975.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 452

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 136/425 (32%), Gaps = 54/425 (12%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS------- 103
           G   D +      + +G + I  S    L D +  +    P +  DN     +       
Sbjct: 41  GKPFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNPMVARAIEKNIPV 100

Query: 104 ----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A  +       I+ +TG++GK++  + + +     G S    G     +S    
Sbjct: 101 ITEVELAYMISDAP---IIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFPASEV-- 155

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                             ++     + +E SS  L     D         TNL   HIDY
Sbjct: 156 ----------------AQTATDKDILVMELSSFQL--MGTDTFHPHIAVITNLMPTHIDY 197

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y  AK  + + +   +   + +  D  +KE+ ++         +          
Sbjct: 198 HGTFEEYVAAKWNIQKNMTADDFVVLNFNQD-LAKELAQKTVAKVVPFSTTEKVDGAYLD 256

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   +  +  S           +PG   V NAL    +    GI +  + E L   
Sbjct: 257 GDTLYFKGEAIMKAS--------EIGVPGSHNVENALATIAVAKLSGIANDAIKETLTHF 308

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R + +G  +         +     +    K +    + ++I++   G DR     
Sbjct: 309 GGVKHRLQALGEINGVKFYNDSKSTN---ILATQKALSGFENSKVILI-AGGLDRGNEFD 364

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  I      + I+ +  PR      ++         +++  +  +A R A +     
Sbjct: 365 ELVPDITGVKL-MVILGESAPR------VKRAADKANVPYVDAKDVADAARIAYDKAEAG 417

Query: 460 DVLVV 464
           DV+++
Sbjct: 418 DVVLL 422


>gi|227822650|ref|YP_002826622.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
 gi|254766017|sp|C3MEM8|MURC_RHISN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227341651|gb|ACP25869.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
          Length = 469

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 87/285 (30%), Gaps = 17/285 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V K   
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPGEFQVYNAL 316
                           H  ++    +   V I                P+PG   V NA 
Sbjct: 233 RKVITYGENPQADVRYHNVRMDGATSVFDVEIRRRRTGQVIQLNGLRLPMPGRHNVSNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G++   + + L     V  RF   G    G  I+ DY H    ++ +L+  
Sbjct: 293 AAVAVAQRLGMEPEAIAKGLASFGGVKRRFTLTG-EWNGASIFDDYGHHPVEIKAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R    GRI+ V      R      +    +     AD  ++       ED       + +
Sbjct: 352 REACQGRIVAV--HQPHRYSRLSSLFEDFSACFNDADTILIAPVYAAGEDAIDGVNSQAL 409

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGHETV 472
              I        +     EA+   + ++    D +V+ G G  T 
Sbjct: 410 VNSIKAAGHRDAQFLTGPEALAPVVSKIAQPGDFVVLLGAGSITY 454


>gi|225854210|ref|YP_002735722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae JJA]
 gi|254766060|sp|C1CD51|MURD_STRZJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722576|gb|ACO18429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae JJA]
          Length = 450

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 120/389 (30%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH   + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLVKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +     +D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|188026372|ref|ZP_02961838.2| hypothetical protein PROSTU_03908 [Providencia stuartii ATCC 25827]
 gi|188020136|gb|EDU58176.1| hypothetical protein PROSTU_03908 [Providencia stuartii ATCC 25827]
          Length = 447

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 99/360 (27%), Gaps = 36/360 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G      G          +         +   
Sbjct: 89  PERWVLAVAGTHGKTTTAGMLAWILEDCGYK---PGFLIGGVPGNFEVSAQLGESPFFVI 145

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                        S                        NL  DH D  +  +A       
Sbjct: 146 EADEYDCAFFDKRSKFV-----------HYSPRTLVLNNLEFDHADIFENLEAIQ----- 189

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  PA        S   +K+    GC               K       Q   
Sbjct: 190 KQFHHLVRIVPASGKIFMPDSDNNLKQVMTMGCWSEQEFVGEHGEWQAKKLNHDGSQFEV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              + +  +  +   G   + NAL+A      +G+ +      L K      R E  G  
Sbjct: 250 YYQQQRVGEVNWSQVGNHNIQNALMAIAAAHHVGVPAKEACFALGKFINARRRLELRGVE 309

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGD--RDQGKRPIMGKIALD 408
             G  +Y D+AH   ++   L+ +R+   G  RI+ V     +  +    +  +      
Sbjct: 310 -YGVSVYDDFAHHPTAILATLEALRSKVGGTSRILAVLEPRSNTMKLGVNKSDIAPALGR 368

Query: 409 LADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVV 464
            AD   +         P  I     EI             I+A+    IE     D ++V
Sbjct: 369 -ADEVFLFQ-------PSNIPWMVTEIAEKCVQPARWSGDIDALAQMVIETAQPGDHILV 420


>gi|163760789|ref|ZP_02167869.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
 gi|162282111|gb|EDQ32402.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
          Length = 474

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 142/438 (32%), Gaps = 57/438 (13%)

Query: 50  VGNKED-GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF 105
            G +   GH     A   G AE +VVS+A    +          + VV   R+   L+  
Sbjct: 51  KGIEVHIGH----SAANLGDAEVVVVSTAIKKSNPELMAARERLLPVV---RRAEMLAEL 103

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
                     N +A+ GT GK++  S V  + +  GL    I     I+++  + R+   
Sbjct: 104 MRF------RNAIAIGGTHGKTTTTSMVATLLEAGGLDPTVI-NGGIINAYGTNARMGEG 156

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             + +    S                          +       TN+  +H+D++ T  A
Sbjct: 157 EWMVVEADESD--------------------GTFLKLPAEIAVITNIDPEHLDHYGTFDA 196

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
                 R F E +P     ++  D    + ++ R  +          Q            
Sbjct: 197 ARA-AFRQFAENVPFYGFGVMCLDHPEVQALVSRIEDRRVITYGENPQSDVRFFNHRMDG 255

Query: 286 HNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                  +    K  +         P+PG+  V NA+ A  +   +G+    + + L + 
Sbjct: 256 PVSVFDVVINSRKTGETVELKDLRLPMPGKHNVSNAVAAIAVAFELGLTPDQISKGLGQF 315

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  RF   G +  G  I+ DY H    ++ +L   R    GR+I V      R     
Sbjct: 316 GGVKRRFTHTG-SWNGVEIFDDYGHHPVEIKAVLSAARDACQGRVIAV--HQPHRFSRLS 372

Query: 400 PIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA------EIIHGIPGFIEKGNRIEAIRT 451
            +    +     A+  ++       EDP +          +  G    +   +   A+  
Sbjct: 373 SLFDDFSACFNDANTVMLAPVYAAGEDPIEGIDSAHLVMSMKAGGHRDVRLVDGPSALAP 432

Query: 452 AIE-MLNKQDVLVVAGKG 468
            I  +    D +V+ G G
Sbjct: 433 IIADIAKPGDYVVLLGAG 450


>gi|148985270|ref|ZP_01818493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922468|gb|EDK73587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799723|emb|CBW32288.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae OXC141]
          Length = 446

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 123/389 (31%), Gaps = 54/389 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TASDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D  SK 
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLTSKT 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                  +    +               A     Q+    E         +PG   V NA
Sbjct: 233 EATVVPFSTLEKVDG-------------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 279

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 280 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 339

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 340 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 388

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 389 GVAYVEATDIADATRKAYELATQGDVVLL 417


>gi|29840624|ref|NP_829730.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           caviae GPIC]
 gi|33301359|sp|Q821S1|MURD_CHLCV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29834974|gb|AAP05608.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           caviae GPIC]
          Length = 419

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 122/391 (31%), Gaps = 69/391 (17%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S                 I +V +        A +    H    + +TG++GK++   F+
Sbjct: 66  SPGVKPSHSLVVEAKRRGIPIVTDV-----QLAFQDPEFHRYPSIGITGSAGKTTTVLFL 120

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             + +  G+ +F +G                             + +      VE SS  
Sbjct: 121 VHLLRSMGMGAFAMGNIGVPI---------------------LQAMREKGIRVVEISSFQ 159

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L +  ++   L   +  N+  +H+DYHQ+ Q Y  AK  + + L   ES  +        
Sbjct: 160 LTEQEIETPVLSGAAILNISENHLDYHQSLQNYSEAKRNITKCLQSVESLWVGEWLSPGK 219

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +                              +  +   SV  K          +   Y
Sbjct: 220 SYL------------------------------DYTKEIASVLDKGSALKPLYLHDRSNY 249

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            A  A    I+        L+ L+     P R E++G       I    A T +S+E  L
Sbjct: 250 CAAYALANEISNV-PLEAFLQALQTFEKPPHRIEYLGEKDGVSYINDSKATTMSSVEKAL 308

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
             ++       ++V   G ++      ++  I        IV     R+E      A+ +
Sbjct: 309 IAVKE-----NVIVILGGRNKGSDFTSLIP-ILTQTVKH-IVAMGECRNE-----IAQAL 356

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            G     +  +  EA+  A  +    DV+++
Sbjct: 357 SGSLPLTQARDLQEAVSMAQSIAQPGDVILL 387


>gi|260893414|ref|YP_003239511.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
           KC4]
 gi|260865555|gb|ACX52661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
           KC4]
          Length = 457

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 132/406 (32%), Gaps = 49/406 (12%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILA 119
             ++     + +     +    P L V   R+              A R        ++A
Sbjct: 54  RLVLGEYPSAKEFDLLVLSPGVP-LTVPPVREAKEAGIEIVGELELAFRFARAP---VVA 109

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTGT+GK++  +    I Q +GL ++  G      S   +     P  I +         
Sbjct: 110 VTGTNGKTTTTALTGAIFQAAGLRTWVAGNIGLPLSEVVEEAR--PEDILV--------- 158

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  VE SS  L+       K +     NL  DH+D H    +Y  AK R+F     
Sbjct: 159 -------VEVSSFQLET--TSTFKPVVAVILNLTPDHLDRHGDFNSYRQAKARIFARQTD 209

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           KE   + Y DD   + +   +                + + K   +   + V        
Sbjct: 210 KEVTVLNY-DDPEVRNMAADSCGRVLFFSRRHKLATGVWVAKGEILVKWEGVE---GKVT 265

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 LPG   + NAL A    +A  +   ++   L +   V  R E V   +    + 
Sbjct: 266 EVASLALPGAHNLENALAATAAAVAQNVPLEVIGRVLREFKGVAHRLELVAEINGVKYVN 325

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
                   +    L+          IV+   G ++    R +  K+   +  + ++    
Sbjct: 326 DSKGTNPEATIKALEAYD-----CPIVLIAGGRNKGSDFRLLASKMKEKVKALVLI---- 376

Query: 420 PRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E    + A+    G+   +   +  +A+R A E     DV+++
Sbjct: 377 --GESAPLLAAQAKAAGVSDIVLARDLPDAVRRAREKARPGDVVLL 420


>gi|171909571|ref|ZP_02925041.1| FolC bifunctional protein [Verrucomicrobium spinosum DSM 4136]
          Length = 413

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/380 (16%), Positives = 118/380 (31%), Gaps = 27/380 (7%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +NTRK L        G      L V GT+GK SV +F+  + + + +++        I  
Sbjct: 28  ENTRKLLDDM-KLPMGGQ--KFLHVAGTNGKGSVCAFLHSLLKAAEVNAGLFTSPHLIHF 84

Query: 156 FAQ----DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
             +    +  +T+   +    AL         H +    +  L        +L       
Sbjct: 85  RERIRDAERTITSQEIVKEVDALRKRVEGWDPHPTFFELTFALALDWFRKQELEWVVLET 144

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
                +D   T          +  +        +       +  +       G  V+++ 
Sbjct: 145 GMGGRLDATNTVLPAACVITSISLDHQQHLGATLREIATEKAGIIK-----PGVPVITLK 199

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              + + +    A      ++I         L            L  A    A    S  
Sbjct: 200 QAPEVMQVLSDTARERGAPLSIVTTPLRGYQLGLFGQHQLWNATLAVAAFKAAGFRASEP 259

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGC 390
           VL    K    P RF+    +     + +D AH  ++ E +++       G +  VVFG 
Sbjct: 260 VLRVGLKTVEWPARFQREEQDR----LIIDGAHNPDAAETLVRTWHQAFPGEKASVVFGA 315

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII---HGIPGFIEKGNRI 446
             ++D      + +    +A     T  D+PR+  PE +R E+                 
Sbjct: 316 VSNKDA---KAVMRSLQPIASHWHFTRFDSPRAMAPEDLRKELADLYASAVNCSVHETIE 372

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           +A+  A     +   ++V G
Sbjct: 373 DALAKARHNAER---VLVTG 389


>gi|55981054|ref|YP_144351.1| UDP-N-acetylmuramate--alanine ligase [Thermus thermophilus HB8]
 gi|55772467|dbj|BAD70908.1| UDP-N-acetylmuramate--alanine ligase [Thermus thermophilus HB8]
          Length = 446

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 13/175 (7%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V+NAL AA   +A+G     +   L +   V  RFE VG    G  +  DY
Sbjct: 263 HLRVPGRHNVHNALAAALAALALGASPEAISRGLSRFPGVGRRFERVG-EVGGAWVVDDY 321

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIV----T 416
           AH    ++  L+    + SGR + VF       R Q       + AL  A   +V    T
Sbjct: 322 AHHPTEVQATLEAA--LLSGRRVRVFFQPHRLLRTQELWEAFAQ-ALKGAHEVVVLPVYT 378

Query: 417 DDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E PE +   I      +     + ++ EA+  A      +D+L+  G G
Sbjct: 379 AGERGRESPEALSDRIAKRLEDLGRPARRMDKEEALAYARATARPEDLLLFMGAG 433


>gi|304310319|ref|YP_003809917.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
 gi|301796052|emb|CBL44256.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
          Length = 480

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 138/427 (32%), Gaps = 48/427 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            I  A     G + IVVS+A    +          I VV    + L       YG     
Sbjct: 68  HIGHAAKNVDGTDVIVVSTAIDSANPELDAARERRIPVVPRA-EMLGELMRYRYG----- 121

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV GT GK++  S +  I    G     +     ++S   + +L T   +      S 
Sbjct: 122 -IAVAGTHGKTTTTSLIASILAEGGSDPTFV-IGGRLNSAGTNAKLGTGRFLVAEADESD 179

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S                       ++ +    TN+  DH+  +             F  
Sbjct: 180 ASFLH--------------------LQPMVSVVTNIDFDHMSTYNGDFNRLKETFLRFLH 219

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            LP    A++  DD   +E++ +          + ++     +             +  +
Sbjct: 220 NLPFYGLAVLCVDDPTIREILPQISR-PVVTYGIDHEADIQAVDIQNVGLQSTYRVLRRD 278

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG- 355
            +       +PG   V N+L A  +     I    +   LEK   V  RF+  G      
Sbjct: 279 AESLSITLNIPGRHNVLNSLAAIAVASDENIAGDAIARALEKFQGVGRRFQIQGEIPIMG 338

Query: 356 --GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               +  DY H    +   +  +R     R +V+        + +       ++  D  D
Sbjct: 339 GTVTLVDDYGHHPREVAATIAAVRQSWPSRRLVMIYQPHRYSRTRDLYEDFVQVLSD-VD 397

Query: 412 IAIVTDDNPRSEDP------EKIRAEI-IHGI--PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + ++ +     E+P        +   I + G   P FIE+ + + ++    + L   DV+
Sbjct: 398 VLLLMEVYSAGEEPIAGADSRSLCRSIRMRGAVEPIFIEEPSVLPSVLE--KHLLNGDVV 455

Query: 463 VVAGKGH 469
           +  G G+
Sbjct: 456 LTQGAGN 462


>gi|299142299|ref|ZP_07035432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
 gi|298576388|gb|EFI48261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
          Length = 443

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 105/350 (30%), Gaps = 35/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G      G                   + L    
Sbjct: 102 SKMVCITGSNGKTTTTSLIYHIFKSAGYDVGLAGNIGK--------------SLALQV-- 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SS  L  + +   +       N+  DH+D +  +   +       
Sbjct: 146 ---AEDPHEYYVIELSSFQL--NNMYDFRANIAILLNITPDHLDRYDFKFENYADAKMRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +    E   I + DD     + K       +  +  +                 ++   
Sbjct: 201 IQNQTPEDSFIYWNDDPV---IKKELEKFEIKAYACPFSELKEKGSIGYIEAGTYKLEYP 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  +YN+L A       GI   ++ + L     V  R E V     
Sbjct: 258 TPFNMEQEALSLTGKHNIYNSLAAGLASNIAGIKKEIIRKSLSDFPGVEHRLEKVCKVGG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++    L++++T       V+   G D+     PI   +      +  
Sbjct: 318 VQYINDSKATNVDACWYALESMKT-----PTVLILGGKDKGNDYTPIKELVKKKCRGLVY 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DN +  D                +  +  + +    EM    D +++
Sbjct: 373 LGADNRKLHDNFDALDL------PVKDTHSMKDCVEACHEMAKSGDTVLL 416


>gi|168492843|ref|ZP_02716986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576912|gb|EDT97440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
          Length = 450

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 TSKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|293571733|ref|ZP_06682752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
 gi|291608190|gb|EFF37493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
          Length = 453

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH T++ Y  AK  L + +  ++   + 
Sbjct: 168 MELSSFQL--MGITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + + +R         +       ++       + K+++    E         +
Sbjct: 226 WNQSELQE-LAQRTKARVLPFSTKEVLEDGVYADDHAIYYKKEKIMEISELG-------V 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  +    GI +  + + L   H VP R ++VG            A   
Sbjct: 278 PGTHNVENALAAITVAKLYGISNEAIRQTLHLFHGVPHRTQYVGEIQGRKFYNDSKATN- 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + + +V+   G DR      ++  +    A I             +
Sbjct: 337 --ILATKMALSGFETAK-VVLLAGGLDRGNTFDELVPSLKGIKAMIVF------GQTKEK 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I A    GI   +   +  +A+  A+E     DV+++
Sbjct: 388 LIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILL 425


>gi|330973386|gb|EGH73452.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 486

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 136/426 (31%), Gaps = 64/426 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGHVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  + A++ ++ +  P
Sbjct: 345 GHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAE-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLV--- 463
             E+P       + G        +  +        I   +E+           D+L+   
Sbjct: 404 AGEEP-------VPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 464 ---VAG 466
              +AG
Sbjct: 457 AGDIAG 462


>gi|302669659|ref|YP_003829619.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
 gi|302394132|gb|ADL33037.1| UDP-N-acetylmuramate-alanine ligase MurC [Butyrivibrio
           proteoclasticus B316]
          Length = 464

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 13/276 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  +N+  DH+D+ +      ++  R F +LLP +   +I  D    +E+      
Sbjct: 180 FPKISIISNIDADHLDFFKDLDDIRHS-FRKFAQLLPADGTLVINGDIDNVEEITDSLPC 238

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 S      +          N         G+  D    +PG   VYNAL +  + 
Sbjct: 239 TIITYGSRDSFDYYPTDITYNEQGNPSFTAHLPGGETLDISLAVPGIHNVYNALASIAVA 298

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              GI    ++  L        RFE+ G    G  I  DYAH    ++  L   +     
Sbjct: 299 NLFGISKDNIVAALSAFGGTSRRFEYKG-EIGGVTIIDDYAHHPTEIKATLTAAQNYPHN 357

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHG 435
           +I  VF      R +         AL LAD  ++ D     E          +R +I+  
Sbjct: 358 KIWCVFQPHTYTRTKALLDEFAD-ALSLADHVVLADIYAARETDTLGISSRTLRDKIVAN 416

Query: 436 ---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 F    N  E  +  ++   K D+L+  G G
Sbjct: 417 GHECNYFPTIENFGEIEKFLLQNCTKGDLLITMGAG 452


>gi|282859040|ref|ZP_06268176.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
 gi|282588208|gb|EFB93377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
          Length = 443

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 111/350 (31%), Gaps = 35/350 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G      G                   + L    
Sbjct: 102 SKMICITGSNGKTTTTSLIFHIFKDAGYDVGLAGNIGN--------------SLALQV-- 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +     +  +E SS  LD   +   +       N+  DH+D ++ +   +       
Sbjct: 146 ---AEDPHDYYIIELSSFQLDD--MYNFRANIAILLNITPDHLDRYEYKFENYADAKMRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   KE   I + DD   K+ +++      R      + K          +  +Q T  
Sbjct: 201 IQNQTKEDSFIYWNDDPVIKKELEKFDVKAVRYPFSELKEKGSIGYIEQGQYTIEQPT-- 258

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      L G+  +YN+L A       GI    + + L     V  R E V   + 
Sbjct: 259 -PFNMEQEDLSLTGKHNIYNSLAAGIAANIGGIKKENIRKSLSDFPGVEHRLEKVCKVAG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++    L+++ T       V+   G D+      I   +      +  
Sbjct: 318 VQYINDSKATNVDACWYALESMTT-----PTVLIIGGKDKGNDYDAIKDLVKQKCRAVVY 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  DN      +K+     H      +  +  + +     +    D +++
Sbjct: 373 LGADN------QKLHDNFDHLGITVRDTHSMKDCVAACAALAKPGDTVLL 416


>gi|46199028|ref|YP_004695.1| UDP-N-acetylmuramate-alanine ligase [Thermus thermophilus HB27]
 gi|46196652|gb|AAS81068.1| UDP-N-acetylmuramate-alanine ligase [Thermus thermophilus HB27]
          Length = 446

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 13/175 (7%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V+NAL AA   +A+G     +   L +   V  RFE VG    G  +  DY
Sbjct: 263 HLRVPGRHNVHNALAAALAALALGASPEAISRGLSRFPGVGRRFERVG-EVGGAWVVDDY 321

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIV----T 416
           AH    ++  L+    + SGR + VF       R Q       + AL  A   +V    T
Sbjct: 322 AHHPTEVQATLEAA--LLSGRRVRVFFQPHRLLRTQELWEAFAQ-ALKGAHEVVVLPVYT 378

Query: 417 DDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 E PE +   I      +     + ++ EA+  A      +D+L+  G G
Sbjct: 379 AGERGRESPEALSDRIAKRLEDLGRPARRMDKEEALAYARATARPEDLLLFMGAG 433


>gi|317478445|ref|ZP_07937606.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_1_36]
 gi|316905404|gb|EFV27197.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 4_1_36]
          Length = 461

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 117/364 (32%), Gaps = 41/364 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +A
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLLHQSHVGCIAF-LGGISKNYGTNLLLSATSPYTVIEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             +  S                      +       T    DH+D + T++AY  +    
Sbjct: 170 DEFDRSFHW-------------------LSPWMSVITATDPDHLDIYGTKEAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVT 292
              + P  +  +    +      M+     G    +        H + +           
Sbjct: 211 TTLIQPGGALILHKGLE------MQADVQPGVATYTYSRNEGDFHAENIRIGNGEIFIDF 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ + +  D    +P    + N + A  L    G     + + +     V  RF+F    
Sbjct: 265 VAPDTRINDIQLGVPVSINIENGVAAMALAHLSGATDEEIKQGMASFRGVDRRFDF-KLK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLA 410
           +       DYAH    +   +K++R +   + I V        R +            L+
Sbjct: 324 NDRIVFLSDYAHHPAEIAQSVKSVRELYQDKKITVIFQPHLYTRTRDFYRDFADSLS-LS 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+T+  P  E P      + I   +  GI   I    R E + + +      +VLVV
Sbjct: 383 DEVILTEIYPAREQPIPGVTSQLIYDNLRPGIEKCIC---RKEDVLSLLAQ-KHTEVLVV 438

Query: 465 AGKG 468
            G G
Sbjct: 439 LGAG 442


>gi|323142002|ref|ZP_08076853.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413534|gb|EFY04402.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
          Length = 464

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 96/275 (34%), Gaps = 11/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+D++ T++  + A  + F   + +   A++  D+A  + +     
Sbjct: 175 LYPYLAVVTNIEDDHLDHYGTEENIYQA-FKQFVGNIKEGGKAVLCFDNAKVRRLAAETD 233

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                    G    +I       +               +    +PG   V N++ A   
Sbjct: 234 KEVITYGVEGEGADYIARDISYGVDGTSYKLYYKGEFVTEVHLIVPGRHNVLNSMGAFAA 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +GI +  +L  L+K      RFE  G    G  +  DYAH    + + LK  R    
Sbjct: 294 AHEMGIATDKILASLKKFGGAKRRFETKG-KVNGVWVVDDYAHHPTEIGVTLKAARQTKP 352

Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI--IHGIP- 437
            R++ VF      R +       +      D  I+TD    SE+     + +    GI  
Sbjct: 353 ERLLCVFQPHRYTRTKLLFSEFCE-CFKDCDELILTDIYAASEEAITGVSSMHLAEGIKA 411

Query: 438 ----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +  G   +A      ++   D+++  G G
Sbjct: 412 ATGQEVLYIGKLTKAEEYLERVVRPGDLVMTIGAG 446


>gi|110634356|ref|YP_674564.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium sp. BNC1]
 gi|123057820|sp|Q11GS6|MURC_MESSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110285340|gb|ABG63399.1| UDP-N-acetylmuramate--L-alanine ligase [Chelativorans sp. BNC1]
          Length = 465

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 95/284 (33%), Gaps = 21/284 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +      A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVITNIDPEHLDHYGSFDKVREA-FRQFVENVPFYGLGVMCIDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------FDFLFPLPGEFQVYNA 315
           +          Q             +     I    K        D   P+PG   V NA
Sbjct: 232 DRRVVTYGENLQADVRFENHRMENGHSVFDVIIRARKSDAVKAMRDLRLPMPGRHNVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +G+    + + L     V  RF   G    G  I+ DY H    +  +LK 
Sbjct: 292 TAAIAVANELGMGEEAIRKGLAAFGGVKRRFTLTG-TWNGISIFDDYGHHPVEIRAVLKA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK-IRAEI 432
            R  TSGRII +      R    R +  + +     AD  +V       E P   I +E 
Sbjct: 351 AREATSGRIIAI--AQPHRYTRLRDLFDEFSACFNDADTVLVAPVYAAGESPIAGISSEA 408

Query: 433 I------HGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           +       G           EAI     E  N+ D +V  G G+
Sbjct: 409 LVASLRAAGHRDARFIPGP-EAIAPIVREAANEGDFVVFLGAGN 451


>gi|298252627|ref|ZP_06976421.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis 5-1]
 gi|297532991|gb|EFH71875.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis 5-1]
          Length = 520

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 55/174 (31%), Gaps = 14/174 (8%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NA  A    + +G++        E       RF+  G    G  +  DYAH  
Sbjct: 336 PGLHNALNASAAIVAAVLLGMNPEDAARSAESFRGASRRFDIRGC-VDGVTVVDDYAHHP 394

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +  +L+  R   +   + V        R Q       K    LAD  IVT   P  E 
Sbjct: 395 TEIAALLRAARRKYTSSTLRVLFQPHLFSRTQAFANEFAKSLA-LADDVIVTGIFPAREK 453

Query: 425 PEK---IRAE-IIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E    I AE I+                +  EA           DVL+  G G
Sbjct: 454 QEDFPNINAETIVKAAKSQNLDVKIEAVDDMREAALKLTLRAKSGDVLLTVGAG 507


>gi|302335880|ref|YP_003801087.1| UDP-N-acetylmuramate--L-alanine ligase [Olsenella uli DSM 7084]
 gi|301319720|gb|ADK68207.1| UDP-N-acetylmuramate--L-alanine ligase [Olsenella uli DSM 7084]
          Length = 473

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 127/413 (30%), Gaps = 49/413 (11%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGK 126
            +V+SSA    +           P+      R K LS  +S          +AV GT GK
Sbjct: 73  VVVISSAIPETNPEVIRARELGIPVW----PRAKMLSYLSS------DATTIAVAGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S V  +    G+                D        +            G     
Sbjct: 123 TTTSSMVATMIDHLGM----------------DPSFLIGGIVEEYGTNGRNGRGGYFVCE 166

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S           +       TN+  DH+D++ T +       +  + +    +  I 
Sbjct: 167 ADESD-----GSFLYLNPDVVVVTNIEEDHLDHYGTLKNIERTFCQFMDLVGDAGTIVI- 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL--F 304
              D      + R+               ++ + +          ++     D   +   
Sbjct: 221 -NGDVPHYVELARSTGRRVVSYGFDGACDYVCIPEDSHHRLASSFSVETPSGDSVRVVIK 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG   + NA  A  +  A+G D     + L        RF     +  G  +  DY H
Sbjct: 280 SNPGRHNMANATAAIAVADALGCDLPRAADALSAFQGAHRRF-THVGDVDGVTVVDDYGH 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +   L   R +   RI+ VF      R Q  +      A D AD+ +VT+  P  E
Sbjct: 339 HPTEIRATLAAARDLDFKRIVCVFQPHRYSRTQSLQDQFAH-AFDNADVLVVTEIFPAGE 397

Query: 424 DP------EKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P      + +   +    G+       NR + +R   ++    D+L+  G G
Sbjct: 398 TPIPGVTGKTVSGGVAQAGGVDDVSFIANRKDLVRHLCDVCRPGDLLITQGAG 450


>gi|304392255|ref|ZP_07374197.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
 gi|303296484|gb|EFL90842.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
          Length = 472

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 92/289 (31%), Gaps = 27/289 (9%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D+++T      A  R F E LP     ++  D    + ++ R  
Sbjct: 173 LPATVAVVTNIDPEHLDHYKTFDRAKKA-FRRFIENLPFYGFGVMCIDHPEVQALVARVE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD------FDFLFPLPGEFQVYNA 315
           +          Q                   +  + +        D   P+PG   V NA
Sbjct: 232 DRRLVTYGNNPQADVRFRNVRAQGAKNIFDVVIQDRRSPDAIELNDLELPMPGIHNVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +G+ +  + + L     V  RF   G +  G  ++ DYAH    +  +LK 
Sbjct: 292 TAAIAVAWQLGVGAQEIRDGLAAFKGVRRRFTHTG-SWNGVEVFDDYAHHPVEISAVLKA 350

Query: 376 IRTITS------GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-- 425
            R+         GR+I +      R      +  + A     AD   V       E P  
Sbjct: 351 ARSAVRSGDGTGGRVIAI--KQPHRYTRLDDLFEEFAACFNDADTVYVAPVYAAGEQPID 408

Query: 426 ----EKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
                 +   I   G         R EAI   I       D ++  G G
Sbjct: 409 NRNAASLAEAIRSSGHRDVQAIEGR-EAIADLIRAKAKPGDYVLFLGAG 456


>gi|257899138|ref|ZP_05678791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
 gi|257837050|gb|EEV62124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
          Length = 453

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH T++ Y  AK  L + +  ++   + 
Sbjct: 168 MELSSFQL--MGITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + + +R         +       ++       + K+++    E         +
Sbjct: 226 WNQSELQE-LAQRTKARVLPFSTKEVLEDGVYADDHAIYYRKEKIMEISELG-------V 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  +    G+ +  + + L   H VP R ++VG            A   
Sbjct: 278 PGTHNVENALAAITVAKLYGVSNEAIRQTLHLFHGVPHRTQYVGEIQGRKFYNDSKATN- 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + + +V+   G DR      ++  +    A I             +
Sbjct: 337 --ILATKMALSGFETAK-VVLLAGGLDRGNTFDELVPSLKGIKAMIVF------GQTKEK 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I A    GI   +   +  +A+  A+E     DV+++
Sbjct: 388 LIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILL 425


>gi|71282429|ref|YP_271112.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
 gi|109892700|sp|Q47VR0|MURC_COLP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71148169|gb|AAZ28642.1| UDP-N-acetylmuramate--alanine ligase [Colwellia psychrerythraea
           34H]
          Length = 503

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 140/427 (32%), Gaps = 49/427 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH      +   A  IVVS+A + ++          I VV   R+   L+      +G  
Sbjct: 79  GHQ-AENVVQ--ASVIVVSTAINSENPELVKAKELRIPVV---RRAEMLAELMRFRHG-- 130

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  S +  I    G           ++S   + RL +         
Sbjct: 131 ----IAIAGTHGKTTTTSLIASIF-AQGKLDPTFVIGGLLNSAGTNARLGS--------- 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                         +AS   L          +    TN+  DH++ +Q            
Sbjct: 177 ---SRYLVAEADESDASFLHLQ--------PMVSVITNIDADHMETYQGDFEKLKDTYIE 225

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++  D+   +E++ R                     +     +   V +
Sbjct: 226 FLHNLPFYGLAVVCIDNPVVRELLPRISRQVITYGFSKDADVRAVNYQQNGAVSHFTVEV 285

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +  +    LPG+  V NAL    +    G++   + + L +   +  RFE +   S
Sbjct: 286 EGQ-EPLEMSVNLPGQHNVLNALAGVAVAKDEGVNDEAICKALTEFEGIGRRFEKLTDFS 344

Query: 354 R---GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALD 408
                  +  DY H  + ++  +  +R      R+++VF      R +       ++  +
Sbjct: 345 TAAGDMVLVDDYGHHPSEVKATILAMRQGWPDKRLVMVFQPHRYSRTRDLYEDFVEVLSE 404

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             D   + D     E P      + +   I + G    +   +  +  +     L   D+
Sbjct: 405 -VDCLFLLDVYAAGETPISSADSKSLARSIRLRGQIEPVYVSDVDKLPQLLATQLQDNDM 463

Query: 462 LVVAGKG 468
           ++  G G
Sbjct: 464 VITQGAG 470


>gi|37680606|ref|NP_935215.1| folylpolyglutamate synthase [Vibrio vulnificus YJ016]
 gi|37199354|dbj|BAC95186.1| folylpolyglutamate synthase [Vibrio vulnificus YJ016]
          Length = 421

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 98/367 (26%), Gaps = 21/367 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +             
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRINGQDLADEKH 105

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    +S+       +   L  ++L      ++    +       A      
Sbjct: 106 CEAFDFIEQQRGDISLSL----FEYGTLAALRLFQTEKVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 162 DVSVITSLALDHVDWLGDDINVIGFEKAGIYRSGKPAICGQPTPPSTVAAHADDIGAEFY 221

Query: 288 KQQVTISVEGKDFDFLFPL-------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +  +    +     + +              +     A  L      D  L   ++    
Sbjct: 222 QVGIQFDYQLSGEGWRWQHGAFALEDLPLPGLPLPNAATALMALGASDLELSDINIVNGL 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
                   +        I +D AH  +S E ++  +++   G+ I  V G   D+D    
Sbjct: 282 KNAKLAGRMQVLQTAPLILLDVAHNPHSAEYLVTQLQSRYQGKTIHAVIGMLKDKDIKST 341

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             +          A +T   PR+   E++   +  G   +    +   A   A+      
Sbjct: 342 LEVLAPVTRHWYPASLT--GPRAATAEELIQYLPQGTQSYT---DPAHAFDQALSQAQSD 396

Query: 460 DVLVVAG 466
           ++++V G
Sbjct: 397 EIVLVVG 403


>gi|288904810|ref|YP_003430032.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
 gi|288731536|emb|CBI13091.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
          Length = 451

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 136/425 (32%), Gaps = 54/425 (12%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS------- 103
           G   D +      + +G + I  S    L D +  +    P +  DN     +       
Sbjct: 40  GKPFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNPMVARAIEKNIPV 99

Query: 104 ----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A  +       I+ +TG++GK++  + + +     G S    G     +S    
Sbjct: 100 ITEVELAYMISDAP---IIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFPASEV-- 154

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                             ++     + +E SS  L     D         TNL   HIDY
Sbjct: 155 ----------------AQTATDKDILVMELSSFQL--MGTDIFHPHIAVITNLMPTHIDY 196

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y  AK  + + +   +   + +  D  +KE+ ++         +          
Sbjct: 197 HGTFEEYVAAKWNIQKNMTADDFVVLNFNQD-LAKELAQKTVAKVVPFSTTEKVDGAYLD 255

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   +  +  S           +PG   V NAL    +    GI +  + E L   
Sbjct: 256 GDTLYFKGEAIMKAS--------EIGVPGSHNVENALATIAVAKLSGIANDAIKETLTHF 307

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R + +G  +         +     +    K +    + ++I++   G DR     
Sbjct: 308 GGVKHRLQALGEINGVKFYNDSKSTN---ILATQKALSGFENSKVILI-AGGLDRGNEFD 363

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  I      + I+ +  PR      ++         +++  +  +A R A +     
Sbjct: 364 ELVPDITGVKL-MVILGESAPR------VKRAADKANVPYVDAKDVADAARIAYDKAEAG 416

Query: 460 DVLVV 464
           DV+++
Sbjct: 417 DVVLL 421


>gi|167035502|ref|YP_001670733.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida GB-1]
 gi|189029021|sp|B0KFS5|MURC_PSEPG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166861990|gb|ABZ00398.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida GB-1]
          Length = 482

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 140/440 (31%), Gaps = 61/440 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IFV        GH     A    A+ +VVSSA +  +          I VV    + L+ 
Sbjct: 64  IFV--------GHR-AENAAT--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAE 111

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIG---PTSTISSFAQDN 160
                +G      +AV GT GK++  S +  +    G   +F IG     +  ++    +
Sbjct: 112 LMRYRHG------VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTS 165

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           R                             S     H    ++ +    TN+  DH+  +
Sbjct: 166 RYLIAEADE---------------------SDASFLH----LQPMVAVVTNIDADHMATY 200

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +            F   LP    A++  DD   +E++ +             +     + 
Sbjct: 201 EGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVREILPQVKRPTV-TYGFSEEADIRAIN 259

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                       +  + +  +    +PG   V NAL    +    GI    +++ L    
Sbjct: 260 VRQQGMQTHFTVLRRDCEPLEVSVNMPGNHNVLNALATIAIATDEGITDEAIIQGLSGFQ 319

Query: 341 VVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            V  RF+  G          +  DY H    +  ++K +R     R +V+        + 
Sbjct: 320 GVGRRFQVYGELPVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRT 379

Query: 398 KR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEA 448
           +       ++  D A++ ++ +  P  E+P       ++   I   G    I      E 
Sbjct: 380 RDLYDDFVQVLGD-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAEL 438

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
                 +L   D+L+  G G
Sbjct: 439 APLVKPLLRAGDILICQGAG 458


>gi|282862160|ref|ZP_06271223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
 gi|282563185|gb|EFB68724.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
          Length = 477

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 129/410 (31%), Gaps = 55/410 (13%)

Query: 70  AIVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V +         F A   ++ P+    +        A RL G      LAVTGT+GK+
Sbjct: 78  LVVTAPGWKPGKPLFQAAAEADVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTNGKT 130

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +    +  I + +GL +  +G        A     T                     ++V
Sbjct: 131 TTVRMLASILEAAGLRTAAVGNIGVSLLDAVLGEET------------------YDVLAV 172

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ L       ++  + +  NL  DH+D+H +  AY  A  +       + +     
Sbjct: 173 ELSSYQLHW--APSLRADSAAVLNLAPDHLDWHGSMDAY--AADKGRVYEGNRVACVYNA 228

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----- 302
            D A    V +     GCR +             V       +  ++   K         
Sbjct: 229 QDPATEDLVREADVEEGCRAIGFTLGTPGPSQLGVVDGILVDRAFVANRQKQAQELAQVE 288

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                    + NAL AA L  A G+  + V + L        R E V   +    I    
Sbjct: 289 DVNPSAPHNIANALAAAALARAFGVRPSAVRDGLRAFRPDAHRIEHVADVAGVAYIDDSK 348

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A  +++ E  L           IV    G  +      ++   A  L  + ++       
Sbjct: 349 ATNTHAAEASLAAYDP------IVWIAGGLAKGATFDALVTGAAKRLRGVVLM------G 396

Query: 423 EDPEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
            D   IR  +    P        R +      A+R A  +    D +++A
Sbjct: 397 ADRALIREALARHAPEVPVVDLERTDTGAMSGAVREAARLARPGDTVLLA 446


>gi|260893411|ref|YP_003239508.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
 gi|260865552|gb|ACX52658.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
          Length = 461

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 141/410 (34%), Gaps = 46/410 (11%)

Query: 70  AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +VVSSA    +    A      P++     R+      + +   +    +AV G  GK+
Sbjct: 70  LVVVSSAIKPDNPELLAAREREIPVI-----RR--GELLAWVMRDY--RGIAVAGAHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V  +    GL    +           + RL   S        S  S         
Sbjct: 121 TTTAMVANVLLAGGLDPTVL-VGGYWPLIEGNCRLGKGSYFVTEADESDASFLL------ 173

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +  +    TN+  DH+DY+   +A   A  R F   +     A++ 
Sbjct: 174 --------------LTPMLAVVTNIENDHLDYYGNLEALLGA-FRTFLARIEPPGTAVVC 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D    ++++   +               +   ++    +   +              LP
Sbjct: 219 LDSPLVRQLIGVLNIPVITYGMEEGADYILKKVELSGSSSSALLYYRGRL-LGQLKLNLP 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + NA  A  +   +G+  A+  + L +   V  RFEF+G  + G  +  DYAH   
Sbjct: 278 GKHNLLNAAAAVAVGAYLGVPFAVASQALAEFRSVRRRFEFLG-EAGGVMVVDDYAHHPT 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
            ++  ++  R I  GR++VVF      R     P  G+ +   AD+ ++ +  P  E P 
Sbjct: 337 EVQATIEAARQIHRGRLVVVFQPHRYTRTALLYPEFGR-SFFGADVLVLDEIYPAGEPPL 395

Query: 426 -----EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E I        P        +  +A     E+++  D+++  G G
Sbjct: 396 PGVTAELIAKACQDHCPDLPLYRLPSTGKA-AFLKEIVSPGDLVLTMGAG 444


>gi|84490005|ref|YP_448237.1| UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera stadtmanae
           DSM 3091]
 gi|84373324|gb|ABC57594.1| predicted UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 489

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 59/427 (13%), Positives = 137/427 (32%), Gaps = 26/427 (6%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENI 117
           I  A  +G   ++  + +     S     N  ++V ++     +   + +  ++      
Sbjct: 52  IEIANEKGVSCLITQNPHD-DAISMAKALNFSLIVTEHIEYATAFALNTIVKEYAEDSFK 110

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GKS+    +  I       ++      +  +   D R+ +    Y  K  +  
Sbjct: 111 VAVTGTNGKSTTTHLLYTIFSDFNYDTYTNTDAESEGNTLIDPRVASELSDYYHKNNNID 170

Query: 178 SSQGVTHVSVEASSHGLDQH---RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK--MR 232
                           +  H    +  +   +   TN   DHI+  ++            
Sbjct: 171 VITLEVSEVQGWDDEIMKNHSNKMIRALDADSVIITNASMDHINLVKSFDNLLYEISGAA 230

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  KES  ++  +D   + +     N     +         ++  V         +
Sbjct: 231 KALLNGDKESLLVLNYEDENIRNMANIVSNQSNINVMFFGNYDENNILSVSYKEGVGIYS 290

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            +    +     P      + + + A  +CI   +D   V+E L+    +  RF      
Sbjct: 291 GNELYVE-QKDLPFNSIHFIQDIMAALAVCIYRNMDRGRVIESLKNYKPLARRF---IKL 346

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---- 408
                I  D+AH  + + + ++N   +    + +V    G R       + +  +     
Sbjct: 347 RENPIIIDDFAHNPSGINLTIENGSKLG-NNLFIVNAIRGSRGDDINREIAEALVKSLKD 405

Query: 409 --------LADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQ 459
                      + +V   N   +  + I  EI+      F+   +  E++   + + +  
Sbjct: 406 RDNYTLLLTCSVDVVNHLNTVVDSEKNIFLEILEENNIHFMLFESLEESLLNVVNLASDD 465

Query: 460 DVLVVAG 466
           DV+++ G
Sbjct: 466 DVILLLG 472


>gi|332292531|ref|YP_004431140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170617|gb|AEE19872.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 445

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 133/411 (32%), Gaps = 49/411 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    +A+   A+ ++ S     +           + V+         FAS+       
Sbjct: 55  GHT---EALILNADVVMKSPGIPDKAPIVQRLLEKGVAVISEI-----EFASQYTD---A 103

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG++GK++       I +++G++    G                           
Sbjct: 104 TIVGITGSNGKTTTTMLTGFILEQAGINLGVAGNIGDS-------------------YAK 144

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            ++ + +    +E SS  LD   +           N+  DH+D +  +   + A      
Sbjct: 145 MVAQKEIDTYVLEISSFQLD--GIADFAPHIAVVLNVTPDHLDRYDYKFENYIASKFRIA 202

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               +    I  ADD  S + +K+                     +K           T 
Sbjct: 203 MNQKETDYLIYDADDPVSVDWLKKHPVKSKLLPFSLDKEFENGAFIKDNNLTVQLNNNTF 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           ++   +        G+    NA+ A+ +   + I  A + E LE    V  R E V   +
Sbjct: 263 TMATNNLALK----GQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVEHRLEQVLKIN 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               I    A   N+    L ++         V    G D+    R +   +   +  I 
Sbjct: 319 NVQYINDSKATNVNATFYALDSMSE-----PTVWIVGGVDKGNNYRDLYPLVNEKVKAII 373

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN       K+ +   + +   +E  +  EA++ A ++  + D +++
Sbjct: 374 CLGVDN------AKLMSHFGNMVDIIVETPSMSEAVKIAYKVSERGDNVLL 418


>gi|303254732|ref|ZP_07340833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|303259957|ref|ZP_07345931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261363|ref|ZP_07347311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264029|ref|ZP_07349950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
 gi|303266343|ref|ZP_07352233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|303268810|ref|ZP_07354598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|301801549|emb|CBW34241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV200]
 gi|302598272|gb|EFL65317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|302637497|gb|EFL67984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638876|gb|EFL69337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|302641675|gb|EFL72034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|302644154|gb|EFL74411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|302646434|gb|EFL76660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
          Length = 450

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH   + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLVKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|261493191|ref|ZP_05989720.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496953|ref|ZP_05993320.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307389|gb|EEY08725.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311154|gb|EEY12328.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 475

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 132/420 (31%), Gaps = 52/420 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVT 121
            GA  +VVS+A    +    A   +  P++     R+   L+      +G      +A+ 
Sbjct: 76  AGASVVVVSTAIDETNPEIIAAREARIPVI-----RRAEMLAEIMRFRHG------IAIA 124

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  + +  I       +                +           A +  S   
Sbjct: 125 GTHGKTTTTAMISMIYTE----AKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADESDAS 180

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             H+    S                   TN+  DH+D +             F   LP  
Sbjct: 181 FLHLQPMVS-----------------VVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFY 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++ ADD    E+  R                   ++       ++  T+     +  
Sbjct: 224 GLAVMCADDETVMEIAPRVGRQVITYGFSENADY--RIEDYQQTGFQEHYTVVCPSGERI 281

Query: 302 FLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---R 357
            +   +PG     NA  A  +    GI +  +L  L        RF+ +G+  R      
Sbjct: 282 DVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFIRPNGKIM 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIV 415
           +  DY H    +++ ++  R+   G+  VV      R    R +  +    L+  D  I+
Sbjct: 342 LVDDYGHHPTEVDVTIQAARSGWEGKR-VVMIFQPHRYSRTRDLFDEFVQVLSKVDALIL 400

Query: 416 TDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D     E P      + +   I + G    I   +  +      +++   D+++  G G
Sbjct: 401 LDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|91228515|ref|ZP_01262437.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
 gi|91187949|gb|EAS74259.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
          Length = 485

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 143/448 (31%), Gaps = 62/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           R +  G  +F+        GH    QA  + + A  +VVS+A + ++          I +
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 108

Query: 95  VDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V   R+   L+      +G      +AV GT GK++  + V QI   +GL    +     
Sbjct: 109 V---RRAEMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFV-NGGL 158

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + S   + RL +   +      S  S                       ++ +    TN+
Sbjct: 159 VKSAGTNARLGSSRILIAEADESDASFLH--------------------LQPMVSIVTNI 198

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+D +             F   LP    AI+  DD   +E++ R             
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELIPRISRQVITYGFSED 258

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
               I   +      K    +     + D    +PG     NA  A  +     I+   +
Sbjct: 259 ADVRIEDYRQEGQQGKFT-VVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAI 317

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           L+ +        RF+ +G    G     +  DY H    +++ +   R+    + +V+  
Sbjct: 318 LKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377

Query: 390 CGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFI 440
                 + +        +     D+ I+ D     E P        +   I   G    I
Sbjct: 378 QPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGEKPIAGADGRALCRTIRSRGKVDPI 436

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +       ++   D+++  G G
Sbjct: 437 FVPEIEQLPSVLANVIQDGDLILTQGAG 464


>gi|332366089|gb|EGJ43845.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1059]
          Length = 459

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 130/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 VLTAGGQNGLLSGNIGFPASQV------------------AQTASNKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEAFHPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQAAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+     R       RA  + G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAAR-----VKRAADLAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A       D++++
Sbjct: 403 VS-YLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|329921164|ref|ZP_08277686.1| bifunctional protein FolC [Lactobacillus iners SPIN 1401G]
 gi|328934802|gb|EGG31293.1| bifunctional protein FolC [Lactobacillus iners SPIN 1401G]
          Length = 420

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DN + + P  I A+  +     ++  N   A++ A +     D++VV G
Sbjct: 362 DNLQRKLPVAILAQ--NFNNHVVQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|269216097|ref|ZP_06159951.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Slackia exigua ATCC 700122]
 gi|269130356|gb|EEZ61434.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Slackia exigua ATCC 700122]
          Length = 442

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 8/140 (5%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              ++   +    PGRFE V  +       VD  H      M+  ++R     R +  F 
Sbjct: 289 DDAIKRGLETTRWPGRFELVAASPT---TIVDGGHNEQGAAMLASSLRAYFPHRTVT-FV 344

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAE-IIHGIPGFIEKGNRI 446
            G  +D+  R  M  +   LA      +  +  R+     +  E +  G+   +   +  
Sbjct: 345 AGMLKDKRYR-DMVALVAPLAAKVYCVEPPEPERALPAADLAQEFVRAGVADTVACASIA 403

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           + +  A    +  DV+   G
Sbjct: 404 DGVHRARAEASPDDVVCCFG 423


>gi|212639658|ref|YP_002316178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anoxybacillus
           flavithermus WK1]
 gi|212561138|gb|ACJ34193.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Anoxybacillus
           flavithermus WK1]
          Length = 447

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 110/351 (31%), Gaps = 41/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  + +  + Q +       G   T++     +  T    I      
Sbjct: 109 APIIGITGSNGKTTTTTLIYHMLQEAKRRPLIAGNIGTVACEVAKHA-TKDDII------ 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  L        +       N+   H+DYH T++AY  AK  +F
Sbjct: 162 -----------VMELSSFQLL--GTIRFRPHIAVLLNIFDAHLDYHGTKEAYAEAKGNIF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +  A++ ADD    ++ K++                  +K+             
Sbjct: 209 KNQTETD-YAVVNADDPIVMQLAKKSRARHVPFSVKTPLSYGATVKEGAIY-------FH 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L G   + N L A       G D+  +   L     VP R +FV   + 
Sbjct: 261 DERIIDTTDVALRGTHNLENILAAVAAAKLAGADNEAIRRVLTTFTGVPHRLQFVAEING 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    + +  L           +++   G DR      ++           I
Sbjct: 321 RKFYNDSKATNILATQKALSAFHE-----PVILLAGGLDRGNEFDELLPYF--KHVKAVI 373

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 P+ E   +       GI       N  +A   A E  +  D++++
Sbjct: 374 TFGQTAPKIERVAR-----EAGIQQVKRVDNVEQAAFAAYEWSSPGDIILL 419


>gi|223937423|ref|ZP_03629328.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
 gi|223893974|gb|EEF60430.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
          Length = 477

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 106/357 (29%), Gaps = 34/357 (9%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + +     +A+ GT+GK + A  V+ I   +   +   G  +                  
Sbjct: 103 FQQSKCLSIAIAGTNGKGTTAELVESILTHNNRKTSLCGHGARPVCSVVP---------- 152

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                    ++ +  + ++A+S  L+       +       NL  DH+D + T   Y  A
Sbjct: 153 --------ETKEMDFLVLQANSFQLET--TQFFRPAVAVLMNLAHDHLDRYATHADYVRA 202

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             RLF+     +   +          + +           +           +       
Sbjct: 203 NARLFQNQQAFDWAIVQSEA------LAQLRLLDVPIPSKIITFSANNRRADIFLDRGLL 256

Query: 290 QVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +         +            N + A  +   + I    ++  L+       RFE
Sbjct: 257 ISRLPGWEGPLWNMDECLLRGSHNAENVMAALAVGHVLRIPLEEIVNALKTKAPGAHRFE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +    I    A   ++L+  L ++    +G   +    GG         +G +  
Sbjct: 317 FVAEVNGVKYINDSKATNVDALQKALLSVPPAPAGEPNIWLIAGGKDKSLDYHDVGPLMS 376

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                A +       E  EKIRA             + +EA+  A +     DV+++
Sbjct: 377 QRVKGAFLI-----GEAREKIRAA-WSLFTPCTTVSSLLEAVGAAGKSAVPGDVILL 427


>gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea
           psychrophila LSv54]
 gi|62900515|sp|Q6AJ52|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Desulfotalea psychrophila LSv54]
          Length = 456

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/414 (14%), Positives = 131/414 (31%), Gaps = 62/414 (14%)

Query: 56  GH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYG 111
           GH   F+ QA     + I VS  ++  +  A +R     +        L   A  + +  
Sbjct: 67  GHTFQFLSQA-----DVIFVSPGFADGELLARLRRAGVQV--------LGELALAAPVLD 113

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++A+TGT+GK++V S V  + + SG   F  G             L++   + + 
Sbjct: 114 RP---VVAITGTNGKTTVTSLVGDLLRASGKRVFVGGNIGVPLLDL----LSSGDEVDV- 165

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                        + +E SS  L+               NL  DH+D H     Y  A  
Sbjct: 166 -------------IVLEVSSFQLEL--AGDFSPHIALLLNLSPDHLDRHGDLAGYR-AAK 209

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
               +       AI+  DD     ++        R L       F     +       + 
Sbjct: 210 MHLFQKQGMTDIAIVSGDDPLC--LLSDGCGEASRYLFG-----FSAASDISVAAGHFEF 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALV-AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             + + + +            +     AA +  ++    A +   +    +   R E V 
Sbjct: 263 DFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIERGIAAFTLDAHRMEPVA 322

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + +         A  + ++   L+ +        +++   G D+    R +   +A  + 
Sbjct: 323 SIAGVQYYNDSKATNTGAVISALQQLVR------VILIAGGRDKGDNYRLLREAVAGHVR 376

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + +  P       +    +  +       +  EA+  A     + D +++
Sbjct: 377 TLICIGEATP-------LLVAALEDVVQVYRATSLAEAVSLAASFAEEGDSVLL 423


>gi|33151978|ref|NP_873331.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus ducreyi
           35000HP]
 gi|38372292|sp|Q7VMY1|MURC_HAEDU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33148200|gb|AAP95720.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus ducreyi 35000HP]
          Length = 475

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 130/404 (32%), Gaps = 50/404 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +VVSSA    +   T   +   P++      +   + A  +  +H    +AV GT
Sbjct: 76  AGASVVVVSSAIEENNPEITAAKSARIPVI------QRAQMLAEIMRFRHS---IAVAGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I   +GL    +     + S  ++  L          A +  S     
Sbjct: 127 HGKTTTTAMLSMIYTEAGLDPTFV-NGGLVKSAGKNAHLG---ASRYLIAEADESDASFL 182

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+    S                   TN+  DH+D +             F   LP    
Sbjct: 183 HLQPMLS-----------------VVTNIEPDHMDTYGGDFEQMKTIYVKFLRNLPFYGL 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD    E+  +                 I   +           I    +  D +
Sbjct: 226 AVMCADDDVVMEIAPQVGRQVISYGFNANADYRIENYQQTGFQGHYT-VICPNNERLDVV 284

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYV 360
             +PG     NA  A  +    GI +  +L  L        RF+ +GT  R      +  
Sbjct: 285 LNVPGHHNALNATAALAVAKEEGIANDAILAALADFQGAGRRFDPLGTFKRPNGTVMLID 344

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           DY H    + + +K  R     + I V      R    R +       L+ + ++     
Sbjct: 345 DYGHHPTEIAVTIKAARQGWQHKRI-VMIFQPHRYSRTRDLFDDFVNVLSKVDVL----- 398

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  I  ++       I K +  +A+  +I  L K D ++V
Sbjct: 399 -------IMLDVYAAGENAIVKAD-SKALCRSIRNLGKVDPILV 434


>gi|322831189|ref|YP_004211216.1| UDP-N-acetylmuramate [Rahnella sp. Y9602]
 gi|321166390|gb|ADW72089.1| UDP-N-acetylmuramate [Rahnella sp. Y9602]
          Length = 461

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 104/364 (28%), Gaps = 42/364 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AV GT GK++ A  V  I +  G     +       +F    RL     I L  
Sbjct: 101 PERWVIAVAGTHGKTTTAGMVTWILEACGYEPGYV-IGGVPGNFEVSARLGNSPFIVLEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLILN-------------NLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +  K    +   D    + +             VG     +   K     +     
Sbjct: 207 LVRLVPGKGKIILPEHDTPLKQVMA---MGCWSEQEFVGDAENCVWDAKKLTPDSSTFEV 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                      + L GE  ++N L+A      +G+      + L        R E  G  
Sbjct: 264 YLHGEAVGQVKWNLVGEHNMHNGLMAIAAARHVGVKPEDACKALGDFINARRRLELRGVE 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL- 409
                +Y D+AH   ++   L  +R+   G  RI+ V        +     MG    +L 
Sbjct: 324 -NDVSVYDDFAHHPTAILATLSALRSKVGGTARILAVLEP-----RSNTMKMGMSKNELA 377

Query: 410 -----ADIAIVTDDNPRSEDPEKI---RAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQD 460
                AD   +         P+ I    AE+    I       +    +   ++     D
Sbjct: 378 PSLGRADEVFLLQ-------PQHIPWQVAEVAEHCIQPAHWSADVDSLVDMVVKASQPGD 430

Query: 461 VLVV 464
            ++V
Sbjct: 431 HILV 434


>gi|289624983|ref|ZP_06457937.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647041|ref|ZP_06478384.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488536|ref|ZP_07006566.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156877|gb|EFH97967.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 486

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 136/426 (31%), Gaps = 64/426 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLV--- 463
             E+P       I G        +  +        I   +E+           D+L+   
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 464 ---VAG 466
              +AG
Sbjct: 457 AGDIAG 462


>gi|227550457|ref|ZP_03980506.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257897140|ref|ZP_05676793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|293377364|ref|ZP_06623568.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
 gi|227180358|gb|EEI61330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257833705|gb|EEV60126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|292644056|gb|EFF62162.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
          Length = 453

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 20/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH T++ Y  AK  L + +  ++   + 
Sbjct: 168 MELSSFQL--MGITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAEDYLVLN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + + +R         +       ++       + K+++    E         +
Sbjct: 226 WNQSELQE-LAQRTKARVLPFSTKEVLEDGVYADDHAIYYKKEKIMEISELG-------V 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  +    G+ +  + + L   H VP R ++VG            A   
Sbjct: 278 PGTHNVENALAAITVAKLYGVSNEAIRQTLHLFHGVPHRTQYVGEIQGRKFYNDSKATN- 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + + +V+   G DR      ++  +    A I             +
Sbjct: 337 --ILATKMALSGFETAK-VVLLAGGLDRGNTFDELVPSLKGIKAMIVF------GQTKEK 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I A    GI   +   +  +A+  A+E     DV+++
Sbjct: 388 LIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILL 425


>gi|331087834|ref|ZP_08336759.1| hypothetical protein HMPREF1025_00342 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330409529|gb|EGG88970.1| hypothetical protein HMPREF1025_00342 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 445

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGK 404
           F      S      VD AH  ++ + + ++I     GR  I + G   D++  K   + +
Sbjct: 301 FGRFTCISERPVFLVDGAHNEDAAKRLRESIEAYFPGRKLIYIMGVFQDKEYEK---IIR 357

Query: 405 IALDLADIAIVTDDNPRSE---DPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +  A     T D P  E     +K++  +      +P +   G   +A++ A+E  ++
Sbjct: 358 LTIPYAKCVY-TVDLPNKERTLSAQKLKEAVEAQSEYVPAYA-VGEIKQAVKEALENADE 415

Query: 459 QDVLVVAG 466
            DV++  G
Sbjct: 416 DDVILAFG 423


>gi|317499943|ref|ZP_07958179.1| tetrahydrofolate synthase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898660|gb|EFV20695.1| tetrahydrofolate synthase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 445

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGK 404
           F      S      VD AH  ++ + + ++I     GR  I + G   D++  K   + +
Sbjct: 301 FGRFTCISERPVFLVDGAHNEDAAKRLRESIEAYFPGRKLIYIMGVFQDKEYEK---IIR 357

Query: 405 IALDLADIAIVTDDNPRSE---DPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +  A     T D P  E     +K++  +      +P +   G   +A++ A+E  ++
Sbjct: 358 LTIPYAKCVY-TVDLPNKERTLSAQKLKEAVEAQSEYVPAYA-VGEIKQAVKEALENADE 415

Query: 459 QDVLVVAG 466
            DV++  G
Sbjct: 416 DDVILAFG 423


>gi|259501546|ref|ZP_05744448.1| tetrahydrofolate synthase [Lactobacillus iners DSM 13335]
 gi|302191480|ref|ZP_07267734.1| FolC bifunctional protein [Lactobacillus iners AB-1]
 gi|259167064|gb|EEW51559.1| tetrahydrofolate synthase [Lactobacillus iners DSM 13335]
          Length = 420

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           DN + + P  I A+  +     ++  N   A++ A +     D++VV G
Sbjct: 362 DNLQRKLPVAILAQ--NFNNHVVQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|149020325|ref|ZP_01835217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
 gi|147930627|gb|EDK81609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
          Length = 450

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH   + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLVKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|330950223|gb|EGH50483.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 458

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 135/422 (31%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 47  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 99

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 100 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 153

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 154 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 197

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 198 MCIDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 256

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 257 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDY 316

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 317 GHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 375

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 376 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 428

Query: 467 KG 468
            G
Sbjct: 429 AG 430


>gi|330895226|gb|EGH27564.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 486

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 135/422 (31%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|302185268|ref|ZP_07261941.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae 642]
          Length = 486

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 135/422 (31%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|254419673|ref|ZP_05033397.1| Mur ligase middle domain family [Brevundimonas sp. BAL3]
 gi|196185850|gb|EDX80826.1| Mur ligase middle domain family [Brevundimonas sp. BAL3]
          Length = 468

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 12/253 (4%)

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                    LF     + + A++  D+  +  +++          ++G +   +    + 
Sbjct: 196 HKSMEELRDLFGGFTARATTAVLNLDNPETAALVQTLPAGKAITFALGEEKADLSAYDLQ 255

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 +  +     ++D +  +PG   V NAL A G   A+ + +   ++ LE    + 
Sbjct: 256 PTPTGMKFRLMEGWSEYDVVLNVPGAHNVANALAALGAVKALDVPTGQAVKALETFAGIR 315

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPI 401
            R E VG       +  D+AH  + +   LK +     GR++++F     G     K   
Sbjct: 316 RRMEVVG-TVNDITVIDDFAHNPDKIAATLKTLHAFD-GRLLILFQPHGFGPLKLMKSEF 373

Query: 402 MGKIALDLADIAIVTDDNP--------RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +   A  + +  ++    P        RS   E I   +            R +     +
Sbjct: 374 IDGFAGLMRETDVLLMPEPVYYGGTTDRSVGSEDIATGVRAAGRQAEALPTRADCGDRIV 433

Query: 454 EMLNKQDVLVVAG 466
           +M    D ++V G
Sbjct: 434 QMAQSGDRIIVMG 446


>gi|66047331|ref|YP_237172.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae B728a]
 gi|75500772|sp|Q4ZNY8|MURD_PSEU2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|63258038|gb|AAY39134.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 448

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 120/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T +         
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPALDLLS---- 153

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L                +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 154 --DEVEL--------------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNGQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +P  +       A+  + ++    D ++
Sbjct: 366 APVARHCRAAVL-----LGRDAELIAQALGDAVP-LLRVDTVQAAVEHSAKLAQCGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|331092522|ref|ZP_08341344.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400743|gb|EGG80346.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 461

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 116/407 (28%), Gaps = 42/407 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +       ++F+  +R N P+L   +  + L    +       E  +AV+GT GK++ 
Sbjct: 77  AAIHE---DNEEFAEAVRQNIPML---SRAELLGQLMTNY-----ECPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  +    G     I     + +   + R+       +    +   +    H   + 
Sbjct: 126 TSMLSHVL-LEGEKDPTISVGGILKAINGNIRVGNS---GVFVTEACEYTNSFLHFLPKI 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA-KMRLFEELLPKESPAIIYA 248
           S                    N+  DH+D+ +       +           +E   II  
Sbjct: 182 S-----------------IILNVEEDHMDFFKDIDDIRQSFHRFAQLLPQNEEGTLIING 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +    + +              G                                  + G
Sbjct: 225 EIEKIEAITDGLTCRVLTYGLHGDYDYSAKNISYNETGCTSFDFYRFGEFADRISLSVTG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           E  V NAL A  +     +    + + L        RFE+ G    G  I  DYAH    
Sbjct: 285 EHNVSNALSAIAVGELTNVPLESIKKGLLSFSGTDRRFEYKG-ELNGFTIIDDYAHHPTE 343

Query: 369 LEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---- 423
           +   L +++         +F      R +       + AL LAD  ++ D     E    
Sbjct: 344 ITATLSSVKHYPHRETWCIFQPHTYTRTKAFFHEFAE-ALSLADHVLLVDIYAARETDTL 402

Query: 424 --DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E +  EI           +        ++     D+L+  G G
Sbjct: 403 GMSSELLAEEIKKLGTDAHYFPDFKSVENFVLKHCIHDDLLITMGAG 449


>gi|170700184|ref|ZP_02891202.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
 gi|170134916|gb|EDT03226.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 133/431 (30%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH     A   GA A+VVS+A    +       +  + +V   R   L+       G   
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTD------DNPRSEDPEKIRAEIIH--GIPGFIE--KGNRIEAIRTAIEMLN 457
           +  D  ++T+          + + + +   +     +         +  +A+     +  
Sbjct: 381 STVDALVLTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVATVDDVPDALA---GVAR 437

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 438 NGDVVITMGAG 448


>gi|260654940|ref|ZP_05860428.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Jonquetella anthropi E3_33 E1]
 gi|260630255|gb|EEX48449.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Jonquetella anthropi E3_33 E1]
          Length = 439

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 113/382 (29%), Gaps = 41/382 (10%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK----- 172
           + + GT+GK S A+F++ I + +G  +        I    +      P P  L       
Sbjct: 47  IHLAGTNGKGSTAAFLESIYRAAGYKTALYTSPHLIHLGERLLVNGYPLPPELWAEASQK 106

Query: 173 -------ALSYLSSQGVTHVSVEASSHGLDQHRLDGI------KLIAGSFTNLGRDHIDY 219
                         +     ++ A+++ L +     +             TN+  D    
Sbjct: 107 VAQTILGHPWLSQHRPTYFETLTAAAYLLVRDAKPDVAIIETGMGGRLDATNILPDCRLA 166

Query: 220 HQTQQAYFNAKMRLFE------ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
             T   + +             E      P           E+            S  Y 
Sbjct: 167 VITPIDWDHMAFLGNTLSAIASEKFGIIVPGRPAIFSDNHPELAPEFRACCAAKNSPAYT 226

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---A 330
                +       +  + +++       +   L G +Q  NA +A      +  D     
Sbjct: 227 MDECRIFDAETSLDGCEFSLTTPCGTNRWFSRLLGTYQPENASLALRATEILQKDFPVTE 286

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII--VVF 388
                  +    PGR E V   SR   + +D AH  + ++ +  ++  +     +  VVF
Sbjct: 287 EARREGLRTVRWPGRLEVV---SRDPDVILDGAHNPHGMKALTDSLLALYGKDRLLTVVF 343

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHG--IPGFIEKGN 444
               D+D         ++  L    I T    N R E  + +  +      I   +   +
Sbjct: 344 TAMADKDYAG--EFSYMSSRLKIRLICTRVPHNTRCESAQVLAQKATGYPFIDVPLAVED 401

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
            + A+  A    +    +++ G
Sbjct: 402 PVAALEKARGFSDP---VILCG 420


>gi|149005804|ref|ZP_01829543.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126882|ref|YP_003878913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|147762744|gb|EDK69704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483944|gb|ADM90813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|332077113|gb|EGI87575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17545]
          Length = 450

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 67/389 (17%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TASDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 TSKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDI-PGLKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYEIATQGDVVLL 421


>gi|118594413|ref|ZP_01551760.1| UDP-N-acetylmuramate--L-alanine ligase [Methylophilales bacterium
           HTCC2181]
 gi|118440191|gb|EAV46818.1| UDP-N-acetylmuramate--L-alanine ligase [Methylophilales bacterium
           HTCC2181]
          Length = 457

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 130/426 (30%), Gaps = 49/426 (11%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSAT--IRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +   A     G + IV S+A +  +         N PI+      + LS       G   
Sbjct: 54  YTKHAAKNITGVDVIVSSTAITKNNIEIKEGKDKNIPIIARA---EMLSELMRFKTG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK+S  S +  I  + G           I+S   + +L       +    
Sbjct: 108 ---IAVAGTHGKTSTTSLLASILSQ-GNLDPTFVIGGRINSMKANAKLGAGDIFVVEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  I    TN+ RDH++ +Q       A    F
Sbjct: 164 SDASFLH--------------------LNPINTIVTNIDRDHLEAYQGDFERLKATYLDF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTI 293
              +P  S   +  DD    +++                      +       N      
Sbjct: 204 IHQVPFYSNVFLCVDDDEINKIIPDIMRPIVTYGLSAQAQIQATSIVHFENKMNFVVHDK 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +   FD    LPG   V N L A  + +  G+    + + L     V  R++      
Sbjct: 264 YYKKIKFDININLPGIHYVNNTLAAIAVGLEFGVSIKNIQKALRDFEGVSRRYDVYRGIY 323

Query: 354 RGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           +  + ++   DY H    +  +L+  +     + + +        + K        +  +
Sbjct: 324 KNNKNFIVVDDYGHHPTEIRAVLEATKKGFPNKEVALVFQPHRYSRTKDCYEEFLSV-FN 382

Query: 409 LADIAIVTDDNPRSED------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +     + D     ED       EK+  +I           N   A +  ++ + +  ++
Sbjct: 383 IPQKLFLFDIYSAGEDHIPGISSEKLLKDIKR--SNAYHLPNGKRANKIILDNIAEDSII 440

Query: 463 VVAGKG 468
           ++ G G
Sbjct: 441 LIMGAG 446


>gi|20094192|ref|NP_614039.1| UDP-N-acetylmuramate-alanine ligase [Methanopyrus kandleri AV19]
 gi|19887211|gb|AAM01969.1| UDP-N-acetylmuramate-alanine ligase [Methanopyrus kandleri AV19]
          Length = 512

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 110/332 (33%), Gaps = 32/332 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++ V GT+GK++  + ++ +C++ GL +   G      +      L    P  ++ 
Sbjct: 107 PTRPVIGVGGTNGKTTTVAMIRHVCEQLGLEAPHHGLPGMQGNVGLLPPLQARLPGDVSV 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT------QQAY 226
               +++ G     +EA+   L Q     +  I     N   D + Y +           
Sbjct: 167 L--EIATFGKRGEILEAAE--LSQVECVCVTNITPDHLNEAGDFLTYARCEAELLEPDTI 222

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A +   + L+      + +  D     +     +   +    G   +   +       
Sbjct: 223 ELAVLNAQDPLVVGAPEVVDFNGDIVYYGLDVEPFDTSEKECWCGGHVEVHEILPWVGPF 282

Query: 287 NKQQV-------------------TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             ++                     +     +++   P+ G    YNAL A  +C     
Sbjct: 283 KCRECGLRSPEPDYLATDVDLSGFRLICPDGEYEVRLPVMGLHNAYNALAAIAVCSEFLG 342

Query: 328 -DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRII 385
            D   V+E L+    V GR E +  +     + +DY H    ++  L+ ++      R+ 
Sbjct: 343 LDVEDVVEALQSFEGVEGRLEVL-WDDGERVVILDYGHNPAGVDATLRCVKEAYRERRVC 401

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            V     +        + + A DLAD+ +V  
Sbjct: 402 AVIAVASELGPEGDEEILRRAADLADLVVVAS 433


>gi|310659201|ref|YP_003936922.1| UDP-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Clostridium
           sticklandii DSM 519]
 gi|308825979|emb|CBH22017.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Clostridium
           sticklandii]
          Length = 446

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 93/282 (32%), Gaps = 18/282 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +  E SS  L+   +   +    +  N+  DH++ H+T   Y  AK R+FE     E  
Sbjct: 155 FLITELSSFQLES--IKTFRPCISAILNITEDHLNRHKTMSEYMKAKFRIFENQSSDEFL 212

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y D+       +              +       +             ++ KD    
Sbjct: 213 VLNYDDELLRLSQSEIKPKIIYFSRREILKEGIFVENEQIVACIGNTKEYIMDVKDILL- 271

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G+  + N L A  + +  GID +++ + +     V  R E V T +    I    A
Sbjct: 272 ---LGQHNLENVLAAVSIAVLAGIDKSIIKQEVMNFRGVEHRLELVRTYNDVNYINDSKA 328

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +S    L+          +++   G D+       +      +  + ++       E
Sbjct: 329 TNPDSSIKALEA-----MNTPVILIAGGMDKQSDYSSFIDSCIPKVKHLILL------GE 377

Query: 424 DPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             + I    I  G+    +  +  +A+  A     + D +++
Sbjct: 378 TKDVIEKTAISKGLGNITKVEDMKQAVDVAFLKAKEGDTVLL 419


>gi|269967384|ref|ZP_06181444.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
 gi|269827972|gb|EEZ82246.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
          Length = 485

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 143/448 (31%), Gaps = 62/448 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
           R +  G  +F+        GH    QA  + + A  +VVS+A + ++          I +
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 108

Query: 95  VDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           V   R+   L+      +G      +AV GT GK++  + V QI   +GL    +     
Sbjct: 109 V---RRAEMLAELMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGLDPTFV-NGGL 158

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           + S   + RL +   +      S  S                       ++ +    TN+
Sbjct: 159 VKSAGTNARLGSSRILIAEADESDASFLH--------------------LQPMVSIVTNI 198

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH+D +             F   LP    AI+  DD   +E++ R             
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELIPRISRQVITYGFSED 258

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
               I   +      K    +     + D    +PG     NA  A  +     I+   +
Sbjct: 259 ADVRIEDYRQEGQQGKFT-VVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAI 317

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           L+ +        RF+ +G    G     +  DY H    +++ +   R+    + +V+  
Sbjct: 318 LKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVTINAARSGWQDKRLVMIF 377

Query: 390 CGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFI 440
                 + +        +     D+ I+ D     E P        +   I   G    I
Sbjct: 378 QPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGEKPIAGADGRALCRTIRSRGKVDPI 436

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 +       ++   D+++  G G
Sbjct: 437 FVPEIEQLPSVLANVIQDGDLILTQGAG 464


>gi|282859037|ref|ZP_06268173.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bivia
           JCVIHMP010]
 gi|282588205|gb|EFB93374.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bivia
           JCVIHMP010]
          Length = 459

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 125/421 (29%), Gaps = 33/421 (7%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                L   +   + NT I+         + F             A    +   +     
Sbjct: 57  EENIDLIPTACRDKENTLIIYTPAIPTTHAEFVYFQKNGFEIQKRAQVLGTLTKTHKGLC 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                    +S         SS   +  L     I      +Y+ S    +V +EA    
Sbjct: 117 FAGTHGKTTTSSMCAHIMHQSSVDCNAFLGG---ISKNYGTNYILSDKSDYVVIEADEFD 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              H    ++      T+   DH+D + T++AY  +     E +          A   + 
Sbjct: 174 RSFH---WLRPWMTVITSTDPDHLDIYGTKEAYLESFRHYTELIQ------PGGALIIHK 224

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQV 312
              ++     G  +     +    H + +               +         P    +
Sbjct: 225 DLEVQPNVQEGVTIYEYSREEGDFHAENIRIKEGTIVFDFISPIETIKNVELGQPIPINI 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N + A  +    G+ +  + E +     V  RF+F   NS    +  DYAH    +   
Sbjct: 285 ENGISAMAMAQLNGVSANEIREGMRTYGGVDRRFDFKVMNS-KHVVLSDYAHHPKEILQS 343

Query: 373 LKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----- 425
            K+++ + + R + V        R +         AL   D  I+T+  P  E+P     
Sbjct: 344 AKSLKELYADRKVTVIFQPHLYTRTRDFYKEFAD-ALSFFDEVILTEIYPAREEPIEGVT 402

Query: 426 -EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ETV-----HIVTNG 478
              I   +  GI   +   +  E +          DVLV+ G G+ +        ++ + 
Sbjct: 403 SALIFDNLKAGIEKQLIVKD--EVLNFVKS--RDFDVLVILGAGNLDNYVPQIAQLIEDK 458

Query: 479 E 479
           E
Sbjct: 459 E 459


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040773|gb|ACT57569.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 135/419 (32%), Gaps = 51/419 (12%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE +V+S+A    +    A    N PI+        L               ++V+GT G
Sbjct: 67  AEILVLSTAIDKDNVECIAARERNIPIIFRSEMLAGLMRC---------RKSISVSGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  + ++       I     I+S+  + R+ T   I +    S  +       
Sbjct: 118 KTTTTSLIAALLEQGKFDPTVI-NGGIINSYGTNARIGTSEWIVVEADESDGTFIR---- 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+DY+    A   A    F + +P    A+
Sbjct: 173 ----------------LPSDIVVVTNIDPEHLDYYGDFNAIR-AAFYKFIDNIPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK------D 299
           +  D    + ++ R  N          Q    +                           
Sbjct: 216 VCMDHPEVRSLIARIQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVI 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D   PL GE  + NA  +  +   +G+ S  V + L     +  RF  VG       ++
Sbjct: 276 KDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGV-WNDVHVF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    +  +L  +R I   +II +      R      +  + +     ADI +++ 
Sbjct: 335 DDYGHHPIEISSVLAAVRQICPRKIIAI--HQPHRYSRLSTLFDQFSSCFGDADIVLISP 392

Query: 418 DNPRSE-------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E        PE ++   + G P      +    +   + +    D ++  G G+
Sbjct: 393 VYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGN 451


>gi|328472000|gb|EGF42877.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           10329]
          Length = 485

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 147/472 (31%), Gaps = 67/472 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEA 70
           L     I      E  + E     R +  G  +F+        GH    QA  + + A  
Sbjct: 43  LNEGYEITGSDLSENPVTE-----RLVSKGATVFI--------GH----QASNVEK-ASV 84

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + ++          I +V   R+   L+      +G      +AV GT GK++
Sbjct: 85  VVVSTAINEENPEVMAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V QI   +GL    +     + S   + RL +   +      S  S          
Sbjct: 136 TTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------- 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+  DH+D +             F   LP    AI+  
Sbjct: 188 -------------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCI 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   +E++ R                 I          K    +     + D    +PG
Sbjct: 235 DDPVIRELIPRISRQVITYGFSDDADVRIENYHQEGQQGKFT-VVRKGRANLDITLNIPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHT 365
                NA  A  +     I+   +L+ +        RF+ +G    G     +  DY H 
Sbjct: 294 RHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHH 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE 423
              +++ +   R+    + +V+        + +        +     D+ I+ D     E
Sbjct: 354 PTEVDVTINAARSGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGE 412

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P        +   I   G    I      +       ++   D+++  G G
Sbjct: 413 KPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGAG 464


>gi|121998786|ref|YP_001003573.1| UDP-N-acetylmuramate [Halorhodospira halophila SL1]
 gi|121590191|gb|ABM62771.1| UDP-N-acetylmuramate [Halorhodospira halophila SL1]
          Length = 454

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 122/365 (33%), Gaps = 35/365 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+ GT GK++ AS    I +R GL    +          +  RL T SP  +    
Sbjct: 103 RCVVAIAGTHGKTTTASMATWILERCGLDPGYL-IGGAPGFSERSARLGTGSPFVVEADE 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +                    +   +       NL  DH D +   +A    ++   
Sbjct: 162 YDTAFFDKRAK-------------VVHYQPRVLLLNNLEFDHADIYPDLEAIA-TQLHHA 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P     +I  DD +   V+ R   +    +  G    +       A H    V + 
Sbjct: 208 IRTVPANGRVLINGDDPHLPSVVARGCWSRLERIGFGADNDWRIDADEAAEH---AVLVH 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     P PG   + NA  A     + G D    ++ + +   V  R E  G    
Sbjct: 265 RGTPLGALQPPQPGRHNLANAAAAVAAAASAGADPTTAVKAINEFPGVRRRLELRGC-VD 323

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADI 412
           G  +  D+AH  +++   L  + T    R++ V     +  R    R  + + AL  AD 
Sbjct: 324 GVEVIDDFAHHPSAVAATLNALAT-PGRRLLAVLEPRSNTMRLGIHRHQLAE-ALGHADQ 381

Query: 413 A-IVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-- 468
           A ++T  D P S    +  A +   +    E  +     R A+      D LVV   G  
Sbjct: 382 AFVLTPPDLPWS--VSEALAPLGERLHTAAEVSDLA---RLALAKARPGDCLVVMSNGAF 436

Query: 469 ---HE 470
              HE
Sbjct: 437 GDIHE 441


>gi|172059550|ref|YP_001807202.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           MC40-6]
 gi|229486473|sp|B1YSS5|MURC_BURA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171992067|gb|ACB62986.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 133/431 (30%), Gaps = 56/431 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH     A   GA A+VVS+A    +       +  + +V   R   L+       G   
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  LPG   V NAL A  +   +G+    + + L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTD------DNPRSEDPEKIRAEIIH--GIPGFIE--KGNRIEAIRTAIEMLN 457
           +  D  ++T+          + + + +   +     +         +  +A+     +  
Sbjct: 381 STVDALVLTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVASVDDVPDALA---GVAR 437

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 438 NGDVVITMGAG 448


>gi|225860677|ref|YP_002742186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229802|ref|ZP_06963483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254818|ref|ZP_06978404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502480|ref|YP_003724420.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|254766062|sp|C1CQG4|MURD_STRZT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225728254|gb|ACO24105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238075|gb|ADI69206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390416|gb|EGE88757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA04375]
 gi|332075981|gb|EGI86447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41301]
 gi|332203845|gb|EGJ17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47368]
          Length = 450

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIATDKNTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH   + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMAAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|187479352|ref|YP_787377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           avium 197N]
 gi|118595642|sp|Q2KVF5|MURD_BORA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115423939|emb|CAJ50491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bordetella avium
           197N]
          Length = 508

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 71/385 (18%), Positives = 127/385 (32%), Gaps = 49/385 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A          +LAVTGT+GK++V +  +Q+ +  GLS+   G  S        
Sbjct: 118 RALASLAEARAYHP--RLLAVTGTNGKTTVTALTRQLIEACGLSARAAGNISP------- 168

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                      +   +           +E SS  L+      ++  A    N+ +DH+D+
Sbjct: 169 -------AALASLMEALDQDALPDVWVLELSSFQLET--THSLQADAAVVLNVTQDHLDW 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H   QAY  AK RL    L     AI+  DD  +  ++   +    R        +   +
Sbjct: 220 HGDMQAYAQAKARL----LKMARVAIVNRDDPLTLAMVADVNGLNVRSFGRDLPQRVGDM 275

Query: 280 -----KKVCAIHNKQQVTISVEGKDFDFLFPLPGEF-------QVYNALVAAGLCIAIGI 327
                + V  +   +               P P             +AL   G+  A+  
Sbjct: 276 GLELGQGVAWLVACEPSDFDEPVVRRKKDAPPPQRGEGRMSRLMPVDALRIRGVHNALNA 335

Query: 328 DSALVLEHLEKLHVVPGRF-------EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            +AL L  + +L   P          E            VDY + S    +         
Sbjct: 336 LAALQLARVLELGWGPMLRALRDYAGEPHRAAFVRSIGGVDYINDSKGTNVGATVAALEG 395

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGF 439
            G+ +V+   G  + Q   P+   +    A   ++   D P       I   +       
Sbjct: 396 LGQTVVLIAGGQGKGQDFSPLRSAV-SRHARAVVLIGADGP------AIGQVLESTGVAL 448

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   +  EA+R A E+    + +++
Sbjct: 449 VVAADMREAVRRAAEIAQAGEAVLL 473


>gi|254465031|ref|ZP_05078442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
 gi|206685939|gb|EDZ46421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
          Length = 463

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 127/413 (30%), Gaps = 49/413 (11%)

Query: 65  AQGA----EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--P 114
             GA     A++ S      Y   +          + V ++   F   FA   +  H  P
Sbjct: 60  KAGAFDDVAALITSPGIPHLYPKPNPVIRAALEAGVPVDNDIGLFFRSFADADWQMHDQP 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AVTG++GKS+  + +  I Q +G  S   G                   + L    
Sbjct: 120 PRVVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDPPGEGGVVVLEL---- 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          SS+  +  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 176 ---------------SSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218

Query: 235 E--ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +     S +       +   V + + +      +    G    +       ++ +  
Sbjct: 219 AEADRTAPSSASTRTRGCFWRPAVRRASDDRVIASRARKLTGPGWQVFARKGFLSEYRKG 278

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 D   +  LPG     NA  A      +G+   ++ + +     +P R + +   
Sbjct: 279 RQAASIDLREMTGLPGAHNHQNACAAYAAARTLGLAPRVIGDAMATFPGLPHRSQTIAEA 338

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    +    A   +S    L   + I   R I     G ++D G   + G+        
Sbjct: 339 AGVRYVNDSKATNLDSAVKALSAFKNI---RWIC---GGLEKDGGLEALKGQTGNVQKAY 392

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            I         +      ++               A+  A+      D +++A
Sbjct: 393 VI-------GREAAGFALQLDV---EAEVCTTMAAAVERAMADAQAGDTVLLA 435


>gi|170288579|ref|YP_001738817.1| FolC bifunctional protein [Thermotoga sp. RQ2]
 gi|170176082|gb|ACB09134.1| FolC bifunctional protein [Thermotoga sp. RQ2]
          Length = 435

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 116/388 (29%), Gaps = 41/388 (10%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------------- 151
            +           + V GT+GK SV + +  I    G                       
Sbjct: 35  LSKLGNPHLKYKSIHVGGTNGKGSVTNMISHILISQGYRVGSYYSPHLSTFRERIRLNEE 94

Query: 152 -------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-------ASSHGLDQH 197
                         +  L       +     +     +  +              GL   
Sbjct: 95  YISEEDVVKIYEKMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLG-G 153

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RLD   ++    + +     D+ +T              ++ +  P +       + +VM
Sbjct: 154 RLDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVM 213

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +         + V  +   + +K +    N+         +D       P + +     +
Sbjct: 214 EDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVAL 273

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                  + +    + E L+    + GRFE +     G    +D AH  +  E ++++++
Sbjct: 274 KTLEATGLPLSEKAIREGLKNAKNL-GRFEIL--EKDGKTYILDGAHNPHGAESLVRSLK 330

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHG 435
              + + + +V G   D++   R  + +    + +  IVT   +PR +D   +       
Sbjct: 331 LYFNDKPLNLVIGILDDKN---REDILRKYTGIFERVIVTCVPSPRMKDMNSLVDTAKKF 387

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                   + +EAI       ++ D +V
Sbjct: 388 FKNVEVIEDPLEAIE-----SSEGDTVV 410


>gi|148269894|ref|YP_001244354.1| FolC bifunctional protein [Thermotoga petrophila RKU-1]
 gi|61657383|emb|CAI44299.1| folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga
           petrophila]
 gi|61657515|emb|CAI44426.1| folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga sp.
           RQ2]
 gi|147735438|gb|ABQ46778.1| FolC bifunctional protein [Thermotoga petrophila RKU-1]
          Length = 437

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 116/388 (29%), Gaps = 41/388 (10%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------------- 151
            +           + V GT+GK SV + +  I    G                       
Sbjct: 37  LSKLGNPHLKYKSIHVGGTNGKGSVTNMISHILISQGYRVGSYYSPHLSTFRERIRLNEE 96

Query: 152 -------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-------ASSHGLDQH 197
                         +  L       +     +     +  +              GL   
Sbjct: 97  YISEEDVVKIYEKMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLG-G 155

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RLD   ++    + +     D+ +T              ++ +  P +       + +VM
Sbjct: 156 RLDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVM 215

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +         + V  +   + +K +    N+         +D       P + +     +
Sbjct: 216 EDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVAL 275

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                  + +    + E L+    + GRFE +     G    +D AH  +  E ++++++
Sbjct: 276 KTLEATGLPLSEKAIREGLKNAKNL-GRFEIL--EKDGKTYILDGAHNPHGAESLVRSLK 332

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHG 435
              + + + +V G   D++   R  + +    + +  IVT   +PR +D   +       
Sbjct: 333 LYFNDKPLNLVIGILDDKN---REDILRKYTGIFERVIVTCVPSPRMKDMNSLVDTAKKF 389

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                   + +EAI       ++ D +V
Sbjct: 390 FKNVEVIEDPLEAIE-----SSEGDTVV 412


>gi|313888161|ref|ZP_07821835.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845851|gb|EFR33238.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 432

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
             GR E V   SR   I +D AH  + ++ +++++      ++ ++     D++  K   
Sbjct: 295 WKGRMEIV---SRDPLIILDGAHNFDGIKRLVESLDNFKFKKLHLIMSILADKEHKK--- 348

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQ 459
           M +      D  +  + D  R   P+++ +E    G+ G +   +  EA+    +   + 
Sbjct: 349 MLEEIASYTDEVVFVNLDYKRGTSPDELSSEASEYGLKGQVMTID--EALAYYKKSYQEG 406

Query: 460 DVLVVAG 466
           D++++ G
Sbjct: 407 DLILITG 413


>gi|187777501|ref|ZP_02993974.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
 gi|187774429|gb|EDU38231.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 113/360 (31%), Gaps = 47/360 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P NI  VTG+ GK++  + V ++ ++ G  ++  G   T      +         
Sbjct: 111 FIKYCPANIFGVTGSDGKTTTTTLVYEMLKKEGYKTWVGGNIGTPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L       +       TNL  +H+D H+  + Y  
Sbjct: 162 ---------EMKEDHMVVLELSSFQL---MTMDVSPEISLITNLSPNHLDVHKDFEEYVE 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+     +   +   DD  +  + K A     +   V        L         
Sbjct: 210 AKKNIFKYQENNDLLVL-NKDDELTNRMEKEALGNILKFSLVEKVYDGACLSNNKLTILG 268

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           ++V  S + K                 L+AA   +   +    +         V  R EF
Sbjct: 269 KEVCDSKDIK--------LKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFSGVEHRCEF 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   +         A + +     L         + +++   G D+     P+    A +
Sbjct: 321 IREVNGVKYYNDSIASSPSRTLAGLNAFE-----KPVILIAGGYDKKIPFEPL----AEE 371

Query: 409 LADIA---IV---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             D     I+   T    +S   + I           +   +  EA++ A ++  K D++
Sbjct: 372 GYDKIKTLILMGDTKSKIKSAFEKVILD--KKCKIEIVMVNSMEEAVKVADDISEKGDII 429


>gi|255037244|ref|YP_003087865.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dyadobacter
           fermentans DSM 18053]
 gi|254950000|gb|ACT94700.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dyadobacter
           fermentans DSM 18053]
          Length = 456

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 112/362 (30%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FASR        ++A+TG++GK++       + + +GL+    G               
Sbjct: 104 EFASRYTD---AKLIAITGSNGKTTTTLLTYHLLKTAGLNVGLAGNIGDS---------- 150

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQT 222
                        ++ +   +  +E SS  LD   +           N+  DH   Y   
Sbjct: 151 ---------FAWAVAEKQFEYYVLEISSFQLD--NIIDFHPYISLLLNITPDHLDRYGYD 199

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            Q Y ++K  +       +        +   KE+ KR    G   +        +     
Sbjct: 200 FQNYVDSKFNIIRNQQASDYFIYYKESEVIQKELEKRNPAVGRIEV---SLDNALEAGSY 256

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                          +      P+ G     NAL A  +   +GID   + E L+     
Sbjct: 257 LENGTLVSKINGNALEIAFAELPVKGPHNAINALSAISVAQLLGIDPEKIREGLKSFTNA 316

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E V        I    A   +S+   L +         +++   G D+      I 
Sbjct: 317 PHRLEQVEVIGGVTYINDSKATNVDSVFYALGSFDQ-----PVILIAGGVDKGNDYSQIE 371

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  + ++       +DP K+       +P      +  +A+    E     DV+
Sbjct: 372 ALVKSKVKGLIVL------GKDPVKLETYFAGKVPQIYATDDVRDAVNKGREWGVPGDVV 425

Query: 463 VV 464
           ++
Sbjct: 426 LL 427


>gi|118479623|ref|YP_896774.1| folylpolyglutamate synthase [Bacillus thuringiensis str. Al Hakam]
 gi|196044779|ref|ZP_03112013.1| FolC bifunctional protein [Bacillus cereus 03BB108]
 gi|229186698|ref|ZP_04313857.1| Folyl-polyglutamate synthetase [Bacillus cereus BGSC 6E1]
 gi|118418848|gb|ABK87267.1| folylpolyglutamate synthase [Bacillus thuringiensis str. Al Hakam]
 gi|196024267|gb|EDX62940.1| FolC bifunctional protein [Bacillus cereus 03BB108]
 gi|228596801|gb|EEK54462.1| Folyl-polyglutamate synthetase [Bacillus cereus BGSC 6E1]
          Length = 433

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 110/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEIAELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAEENRAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K +++    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVKSHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T IEM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKIEMIGENDVFIITG 417


>gi|78484911|ref|YP_390836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
 gi|118595701|sp|Q31I61|MURD_THICR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78363197|gb|ABB41162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
          Length = 449

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 116/360 (32%), Gaps = 39/360 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R  GK    I+A+TG++GKS+V + V +  + +G +    G               
Sbjct: 92  ELFARAAGKP---IVAITGSNGKSTVTTLVAEALKEAGYAVGVGGNIGCP---------- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L    +           +E SS  L+      ++ IA +  N+  DH+D +   
Sbjct: 139 ---ALDLLTHPTEF-----DVYVLELSSFQLET--TYSLQTIAATVLNISEDHMDRYLAL 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK      +L     A++  D                R      +        + 
Sbjct: 189 EDYIQAK----MTILNNTELAVLPLDFERVGI---ARPGDEVRFGLNYAEALPPKEYGIV 241

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + +  +                G     NAL    LC    +  A+  + L+    +P
Sbjct: 242 MKNGQAWLGWEDHASVPVTAMAQQGLHHQLNALAMMALCRPFDLSDAVFEKVLKTFKGLP 301

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R + V        I         +    +++I+    G++I++ G  G ++      +G
Sbjct: 302 HRTQVVLEQEGVRWINDSKGTNVGATVTAIESIKETLDGQVILIAGGVG-KEADFN-ELG 359

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  +     AI+       +D   I  ++              EA+  A  +    D ++
Sbjct: 360 QAVVQSCRQAIL-----FGQDKAIIAQQLPQ--EKIQLVDTLSEAVLLAKTIAKSGDAVL 412


>gi|127514380|ref|YP_001095577.1| UDP-N-acetylmuramate--alanine ligase [Shewanella loihica PV-4]
 gi|166224729|sp|A3QIM0|MURC_SHELP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126639675|gb|ABO25318.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella loihica PV-4]
          Length = 484

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 122/371 (32%), Gaps = 49/371 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA+ +VVS+A    +          I +V   R+   L+      +G      +AV GT 
Sbjct: 80  GADVVVVSTAIDASNPEILAAQERRIPIV---RRAEMLAELMRYRHG------VAVAGTH 130

Query: 125 GKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S +  +  Q     +F IG    ++  ++    +R                   
Sbjct: 131 GKTTTTSLIASVYGQAERDPTFVIGGLLNSAGTNARLGKSRYLIAEADE----------- 179

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                     S     H    ++ +    TN+  DH+D ++       +    F   LP 
Sbjct: 180 ----------SDASFLH----LQPMVSVVTNIEADHMDTYEGDFEKLKSTFVDFLHNLPF 225

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKD 299
              A+   DD   +E++ R                              + T+  E   D
Sbjct: 226 YGVAVACIDDPVVREILPRIGRKVVTYGFSEDADV--QALNFEQQGYSSRFTVRREGMAD 283

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GG 356
            D    LPG   V NAL A  +     I+   ++  L++   +  RF+ +G  +      
Sbjct: 284 LDLRVNLPGRHNVLNALAAIAVATEDEIEDEAIIRALDEFQGIGRRFQQLGEFTTTAGEV 343

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAI 414
            +  DY H  + +   +K  R+    + +V+        + +       ++     D  +
Sbjct: 344 MLVDDYGHHPSEVAATIKAARSGWPDKRLVMIYQPHRYSRTRDLYDDFVEVLAQ-VDCLL 402

Query: 415 VTDDNPRSEDP 425
           + D     E P
Sbjct: 403 LLDVYSAGEAP 413


>gi|298506400|gb|ADI85123.1| folylpolyglutamate synthetase [Geobacter sulfurreducens KN400]
          Length = 424

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E      R   + +D AH  +    + +++      R+IVV G   D+D      
Sbjct: 283 WPGRMELFSGAPR---VLLDGAHNPDGARALAESLADYPRRRLIVVTGVMADKDA---AG 336

Query: 402 MGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +    L LA   + VT    R  D  ++           +  G   E +  A +   +QD
Sbjct: 337 ILAPVLPLAHEVVAVTPAVERGLDAGRLAELCREKGLNAVAGGTVAEGLALARQRAGEQD 396

Query: 461 VLVVAG 466
           +++V G
Sbjct: 397 LILVCG 402


>gi|167647625|ref|YP_001685288.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter sp. K31]
 gi|189028981|sp|B0T827|MURC_CAUSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167350055|gb|ABZ72790.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter sp. K31]
          Length = 472

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 138/430 (32%), Gaps = 55/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH     A  +GA AIV S+A    +       +  + +V   R+   L+      +   
Sbjct: 63  GHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLV---RRAEMLAELMRLQFS-- 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
                   G +   +  + +      +G     +     I+++  + ++     I +   
Sbjct: 115 -----VAVGGTHGKTTTTSMVAALLDAGALDPTVVNGGIINAYGTNAKVGEGDWIVVEAD 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +K      TN+  +H+D+  T  A        
Sbjct: 170 ESDGSFLK--------------------LKSTVAIVTNIDAEHLDHWGTFDAVKKGFQDF 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E +      A+            +  +       +       +   ++     +  + +
Sbjct: 210 IENIPFYGFAAVCTDHPEVQALTARIENRRLVTYGTNPQAEVRVSNIQMGPEGAQFDILV 269

Query: 294 SVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           S    D         P+ G   V NA  A  +   +G+D+  +   L     V  RF   
Sbjct: 270 SPLSGDLVLYEGLKMPMAGHHNVLNATAAVAVARELGVDADAIRAGLAGFGGVKRRFTTT 329

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  + G RI  DY H    +  +LK  R +++G++I V      R    R +M + +   
Sbjct: 330 GVAN-GVRIVDDYGHHPVEIAAVLKAARAVSTGKVIAVV--QPHRFTRLRDLMTEFSSCF 386

Query: 410 --ADIAIVTDDNPRSEDPEKI--RAEIIHGIPGFIEKGNRIEAIR-------TAIEMLNK 458
             AD  IV D     E P +   R  ++ G+  F  +  R  A+                
Sbjct: 387 NDADTVIVADVYTAGEAPIEGVDRDHLVEGLKKFGHR--RALALESPAALPALIAAEAQS 444

Query: 459 QDVLVVAGKG 468
            D++V+ G G
Sbjct: 445 GDLVVLLGAG 454


>gi|39997464|ref|NP_953415.1| folC bifunctional protein [Geobacter sulfurreducens PCA]
 gi|39984355|gb|AAR35742.1| folC bifunctional protein [Geobacter sulfurreducens PCA]
          Length = 381

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E      R   + +D AH  +    + +++      R+IVV G   D+D      
Sbjct: 240 WPGRMELFSGAPR---VLLDGAHNPDGARALAESLADYPRRRLIVVTGVMADKDA---AG 293

Query: 402 MGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +    L LA   + VT    R  D  ++           +  G   E +  A +   +QD
Sbjct: 294 ILAPVLPLAHEVVAVTPAVERGLDAGRLAELCREKGLNAVAGGTVAEGLALARQRAGEQD 353

Query: 461 VLVVAG 466
           +++V G
Sbjct: 354 LILVCG 359


>gi|77361418|ref|YP_340993.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876329|emb|CAI87551.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 453

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 145/447 (32%), Gaps = 59/447 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R I+AG  +F+   G+ E+    +  A       +VVSSA    +          + VV 
Sbjct: 28  RLIKAGAEVFI---GHHENN---VKDA-----NVVVVSSAIDETNPEIIAAKAARVPVV- 75

Query: 97  NTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTI 153
             R+   L+      +G      +A+ GT GK++  S +  I  ++G   +F IG     
Sbjct: 76  --RRAEMLAELMRFRHG------IAIAGTHGKTTTTSLIASIYAQAGLDPTFIIGGLLNS 127

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +        +        ++ +                          ++ +    TN+ 
Sbjct: 128 AGSNAKVGKSDFLIAEADESDASFLH----------------------LQPMVSVITNIE 165

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH++ +             F   LP    A++  D   + E++ R              
Sbjct: 166 EDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVASELIPRFGRPVITYGESSDA 225

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +      A   K  VT + +G+       +PG+    NA  A  +     I +  +L
Sbjct: 226 DYRMSDFSQSANTCKFTVT-NKQGESLTATLNMPGKHNALNATAAIAVAKDQNIANFAIL 284

Query: 334 EHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           E L+K   +  RF+  G          +  DY H  + +   +   R     + +V+   
Sbjct: 285 EALQKFEGIGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGWPDKRLVMVYQ 344

Query: 391 GG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEK 442
                R +       K+  +  D  ++ D     E+P      + +   +          
Sbjct: 345 PHRFTRTRDLYEDFVKVLAE-VDQLLLLDVYSAGEEPIVGADSKSLCRSLRQRGKEPRHV 403

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            N  E      + L   D+++  G G+
Sbjct: 404 ANSAELASVLADCLQNNDLVLTQGAGN 430


>gi|294674973|ref|YP_003575589.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella ruminicola 23]
 gi|294472650|gb|ADE82039.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella ruminicola 23]
          Length = 457

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 113/375 (30%), Gaps = 50/375 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                L V GT GK++ ++    I  +S L            ++  +  L+    + +  
Sbjct: 110 KSHKGLCVAGTHGKTTTSTMCAHIMHQSQLDCNAF-LGGISKNYGTNYILSDSDYVVIEA 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                S                       ++      T+   DH+D + T++AY  +   
Sbjct: 169 DEFDRSFHW--------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRH 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             E +          A   +    MK+    G R+          H + +   + +    
Sbjct: 209 YTELIQ------PGGALIIHRDLEMKQNVQEGVRIYDYSLNEGDFHAENIRIDNGEITFD 262

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                +         P    + N + A  +    G  +  +   ++    V  RF+F   
Sbjct: 263 FISPIESVKNVQLGQPVPINIENGIAAMAMAQLNGCTADELKYGMQTYGGVDRRFDF-KI 321

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
            +       DYAH    +    K+IR +   + I          R +            L
Sbjct: 322 KTDKLVFLSDYAHHPKEIYQSAKSIRELYKNKHITAIFQPHLYTRTRDFYKDFADALSQL 381

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTA--IEMLNKQD- 460
            D  I+T+  P  E P      + I   +  G+   +        I+ A  ++ +   D 
Sbjct: 382 -DEVILTEIYPARELPIEGVTSQLIYDNLKPGVQKKM--------IQKADVLDYIKDHDF 432

Query: 461 -VLVVAGKGHETVHI 474
            VL+V G G     +
Sbjct: 433 EVLIVLGAGDLDNQV 447


>gi|289168282|ref|YP_003446551.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
 gi|288907849|emb|CBJ22689.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
          Length = 450

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 129/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIVGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S       T      L                +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQVAQ---TATDKDTL---------------VMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K         +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELARKTQATVVPFSTQEKVDGAYLEDGQLYFRGEVVMAANEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +     +    K 
Sbjct: 284 LATIVVAKLRGVDNQTIKETLSAFGGVKHRLQFVDEIKGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|254518609|ref|ZP_05130665.1| FolC bifunctional protein [Clostridium sp. 7_2_43FAA]
 gi|226912358|gb|EEH97559.1| FolC bifunctional protein [Clostridium sp. 7_2_43FAA]
          Length = 432

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRP 400
             GR E +        I +D AH    +E +  NI      +   ++ G   D++     
Sbjct: 297 WKGRLEVLKK---DPFIVIDGAHNIAGIEFLKSNIEEYFKYKNLYLILGILADKNVE--- 350

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M KI   +A     VT ++ R+    +++  ++      I   +  +AI+ ++   NK 
Sbjct: 351 EMVKIIAPVATEVYTVTANSIRAASANELKEVVLEYNNNCIAFDDYDKAIKLSLSKANKD 410

Query: 460 DVLVVAG 466
           D++V AG
Sbjct: 411 DLIVAAG 417


>gi|148997231|ref|ZP_01824885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168575358|ref|ZP_02721294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|307067304|ref|YP_003876270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
 gi|147756931|gb|EDK63971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578542|gb|EDT99070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|306408841|gb|ADM84268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
          Length = 450

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 121/389 (31%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGEHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|330981215|gb|EGH79318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 460

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 136/426 (31%), Gaps = 64/426 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 49  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 101

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 102 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 156 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 199

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 200 MCIDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 258

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 259 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDY 318

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 319 GHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 377

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLV--- 463
             E+P       + G        +  +        I   +E+           D+L+   
Sbjct: 378 AGEEP-------VPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 430

Query: 464 ---VAG 466
              +AG
Sbjct: 431 AGDIAG 436


>gi|189423741|ref|YP_001950918.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
 gi|226711913|sp|B3E3Y4|MURD_GEOLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189420000|gb|ACD94398.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
          Length = 446

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 140/412 (33%), Gaps = 52/412 (12%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
             D   F        A+ +VVS     +       +   + VV          ASR    
Sbjct: 60  HHDEADFTA------ADLVVVSPGVPQEHPLLRKTTEAGVAVVSEI-----ELASRFITA 108

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++A+TGT+GK++  +   ++ + +G S++  G               +  P+  A 
Sbjct: 109 P---LVAITGTNGKTTTTTLAGELFRANGFSTYVGGNIGDPLIDLP----ASGEPVERA- 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                          E SS  L+   +   +    +  N+  DH+D + + QAY NAK+R
Sbjct: 161 -------------VAEISSFQLEW--ISSFRPKVAALLNITEDHLDRYPSYQAYINAKLR 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +FE     +  A++  DD    +  +                + I  ++   +       
Sbjct: 206 IFENQTADD-FAVVNRDDELVWQAAQSLKAQLFPFSRRHELTEGIFSREGELLFRHHGQE 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +S+    F       G   + N + A   C+ +G      LE L +   +  R EFV   
Sbjct: 265 LSIPTAGFRLQ----GVHNLENIMAALACCLLLGCQRETSLELLNRFEALHHRMEFVREV 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +         A    S+   L++         I +   G D+     P+  ++       
Sbjct: 321 ADVRYFEDSKATNVGSVAKALESFEN------ITLIAGGKDKGGSYAPL-AELVQQRVRH 373

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++       E  E+   + +  +    +     EA++ + ++     V+++
Sbjct: 374 LVLI-----GEAAER-MQQELGDLTATHKAATLEEAVQLSADLTAPGGVVLL 419


>gi|330987132|gb|EGH85235.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 448

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 124/361 (34%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+++++ G  G +      +  
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGKLVLIAGGDG-KGADFSALRA 366

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +A +    A++        D E I   +   +   +       A+  +  +  + D ++
Sbjct: 367 PVA-EHCRAAVL-----LGRDAELIAQALGDAVT-LVRVETVQAAVEQSARLAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|330973389|gb|EGH73455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 448

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 120/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T +         
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPALDLLS---- 153

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L                +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 154 --DEVEL--------------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLREHEGVDYYNDSKATNVGAALAAIEGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +   +       A+  + ++  + D ++
Sbjct: 366 APVARHCRAAVL-----LGRDAELIAQALGDAVA-LVRVDTVQAAVEHSAKLAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|325833518|ref|ZP_08165967.1| bifunctional protein FolC [Eggerthella sp. HGA1]
 gi|325485442|gb|EGC87911.1| bifunctional protein FolC [Eggerthella sp. HGA1]
          Length = 496

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRP 400
            PGRFE V        + VD  H       ++ ++  +  GR  + + G   D+D    P
Sbjct: 350 WPGRFEIVRAGEGEPTVVVDGGHNPQGARALVDSLADVFPGRKPVFIMGVLEDKDY---P 406

Query: 401 IMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEII---------HGIPGFIEKGNRIEAIR 450
            M +  + L      VT DNPR+   +++   I                +   +  +A+ 
Sbjct: 407 AMLETVMPLVGGFVAVTPDNPRALSADRLARAIRWTGQDVLGCSAHMRPLVARDMADALA 466

Query: 451 TAIEMLNKQDVLVVAG 466
            A E+     ++   G
Sbjct: 467 KARELAGADGLICAFG 482


>gi|315606654|ref|ZP_07881665.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccae ATCC
           33574]
 gi|315251664|gb|EFU31642.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccae ATCC
           33574]
          Length = 458

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 129/419 (30%), Gaps = 49/419 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP A  + A  +VV +     D             ++   + L        G      L 
Sbjct: 63  IPHACKKPASTLVVYTPAIPADHKELTFFREGGFEIEKRAQVLGTLTRTHKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ ++    I  +S            IS     N + +    ++         
Sbjct: 117 VAGTHGKTTTSTMCAHIMHQSQQDCNAF--LGGISKNYGTNYILSDKSDFVVIEADEFDR 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                 +       T+   DH+D + T++AY  +     E + P
Sbjct: 175 SFHW------------------LHPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQP 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +  +    +      M++    G RV          H + +   + +         + 
Sbjct: 217 GGALILHKNLE------MQQHVQEGVRVYEYSLDEGDFHAENIKIENGEITFDFISPVEC 270

Query: 300 FDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              +    P    + N + A  +    G  +  +   ++    V  RF+F   N R    
Sbjct: 271 VRNVMLGQPVPINIENGVAAMAMAQLNGCTAEELRYGMKTYAGVDRRFDFKIKNDR-HVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVT 416
             DYAH    +    K+IR +   R I          +  R      A  L+  D  I+ 
Sbjct: 330 LSDYAHHPKEIYQSAKSIRELYKDRKITAIFQPHLYTRT-RDFYQDFANSLSLLDEVILC 388

Query: 417 DDNPRSEDPEK------IRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  P  E P +      I   +  G+    I K + ++ ++         DVL+V G G
Sbjct: 389 DIYPAREKPIEGVTSKLIYDNLKPGVEKSMIHKEDVLDLVK-----SRDFDVLLVLGAG 442


>gi|295706370|ref|YP_003599445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
 gi|294804029|gb|ADF41095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
          Length = 449

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 135/441 (30%), Gaps = 79/441 (17%)

Query: 60  IPQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPI----------------LVVDNT---- 98
             Q + Q GA+ +V       ++ +A     T I                ++V N     
Sbjct: 24  AAQLVKQLGAKVVVNDQKPYEENVAAQELEKTGIEVVCGHHPLELLDKADVIVKNPGIPY 83

Query: 99  -----RKFLS---------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                ++ L            A  +        + +TG++GK++  + + ++ +      
Sbjct: 84  SNVLLQEALKRNIPILTEVELAYEISEAP---FIGITGSNGKTTTTTLIYKMLEEDQKQP 140

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   T++                        +     +  E SS  L    ++  + 
Sbjct: 141 LIAGNIGTVACEV------------------AQKATKDNVIVTELSSFQL--MGIEKFRP 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 NL   H+DYH T++ Y  AK  LF     ++  A+I ADD    +         
Sbjct: 181 KISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSED-FAVINADDELVMKASADVKATK 239

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                     +  ++K               E         LPG+    N L A  +   
Sbjct: 240 VPFSVTAQTTEGAYIKNETIF-------FKDEEVMSLKDVVLPGKHNQENILAAVSVVKL 292

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G  +  +   L     V  R ++V T ++        A    + ++ L           
Sbjct: 293 YGCSNEAIYRVLTTFAGVKHRVQYVTTINKRKFYNDSKATNMLATKVALSAFSQ-----P 347

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-RAEIIHGIPGFIEKG 443
            ++   G DR      +  +     A   ++T      E   KI R     GI       
Sbjct: 348 TILLAGGLDRGNEFDDLKEEFKNVKA---VIT----FGETAPKIERVAKEAGIQIVKRVD 400

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           N  +A+  A    +++DV+++
Sbjct: 401 NVKQAVSEAYAYSDEEDVILL 421


>gi|257792510|ref|YP_003183116.1| FolC bifunctional protein [Eggerthella lenta DSM 2243]
 gi|257476407|gb|ACV56727.1| FolC bifunctional protein [Eggerthella lenta DSM 2243]
          Length = 437

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 14/136 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRP 400
            PGRFE V        + VD  H       ++ ++  +  GR  + + G   D+D    P
Sbjct: 291 WPGRFEIVRAGEGEPTVVVDGGHNPQGARALVDSLADVFPGRKPVFIMGVLEDKDY---P 347

Query: 401 IMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEII---------HGIPGFIEKGNRIEAIR 450
            M +  + L      VT DNPR+   +++   I                +   +  +A+ 
Sbjct: 348 AMLETVMPLVGGFVAVTPDNPRALSADRLARAIRWTGQDVLGCSAHMRPLVARDMADALA 407

Query: 451 TAIEMLNKQDVLVVAG 466
            A E+     ++   G
Sbjct: 408 KARELAGADGLICAFG 423


>gi|254419559|ref|ZP_05033283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
 gi|196185736|gb|EDX80712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
          Length = 467

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 115/362 (31%), Gaps = 48/362 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTP----ILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           G  A+V+S    L         +      + VV +   F     +   G+ P  ++A+TG
Sbjct: 65  GFAALVLSPGAPLTHPKPHWTVDKARAAGVPVVGDIELFARALDALPEGRRP-WVIAITG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  + +  + Q++GL+    G          +    TP  +              
Sbjct: 124 TNGKSTTTALIGWVLQQAGLTVHVGGNIGIGVLALPEP---TPGAV-------------- 166

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +E SS+ LD     G    A   TN+  DH+D H   + Y  AK R+F+       
Sbjct: 167 --YVIEVSSYQLDL--TTGFAPDAAILTNISPDHLDRHGGMEGYVAAKRRIFQSRKTAPY 222

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I         + +K    A   V         + +  +                D   
Sbjct: 223 VGIDDPYGFAIWQELKAEGRAVDPVSVERPMDDDLGMYLMDDWLTYNAGGRPAPIVDLSK 282

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG     NA  A      +GI    V++ L     +  R E VG       I    
Sbjct: 283 ARSLPGRHNAQNAAFAFLAVNDMGIPEETVVKGLLTFPGLAHRMEAVGHIGHVRFINDSK 342

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG--------------KRPIMGKIALD 408
           A  +++    L +           VF   G + +               K  ++G+ A  
Sbjct: 343 ATNADAARQALASYPK--------VFWIAGGKPKDGGIDDLADLFPRVAKAYLIGEAAEA 394

Query: 409 LA 410
            A
Sbjct: 395 FA 396


>gi|119469215|ref|ZP_01612199.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
 gi|119447467|gb|EAW28735.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
          Length = 483

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 146/447 (32%), Gaps = 59/447 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R I+AG  +F+   G+ E+    +  A       +VVSSA    +          I VV 
Sbjct: 58  RLIKAGAEVFI---GHHENN---VKDA-----NVVVVSSAIDETNPEIIAAKAARIPVV- 105

Query: 97  NTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTI 153
             R+   L+      +G      +A+ GT GK++  S +  I  ++G   +F IG     
Sbjct: 106 --RRAEMLAELMRFRHG------IAIAGTHGKTTTTSLIASIYAQAGLDPTFIIGGLLNS 157

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +        +        ++ +                          ++ +    TN+ 
Sbjct: 158 AGSNAKVGKSDFLIAEADESDASFLH----------------------LQPMVSVITNIE 195

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH+D +             F   LP    A++  D   + E++ R              
Sbjct: 196 EDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVAAELIPRFGRPIITYGESPTA 255

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +      A      VT + +G+       +PG+    NA  A  +     I +  +L
Sbjct: 256 DYRMSDFSQSANTCTFTVT-NKQGECLTATLNMPGKHNALNATAAIAVAKDQNIANQAIL 314

Query: 334 EHLEKLHVVPGRFEFVG---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           E L+K   +  RF+  G          +  DY H  + +   +  +R     + +V+   
Sbjct: 315 EALQKFEGIGRRFQQYGEFENERGNIMLVDDYGHHPSEVAATIAAVREGWPDKRLVMIYQ 374

Query: 391 GGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEK 442
                + +       K+  D  D  ++ D     E+P      + +   +       +  
Sbjct: 375 PHRYSRTRDLYEDFVKVLAD-VDQLLLLDVYGAGEEPIVGADSKSLCRSLRQRGKEPLHV 433

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +  E      + L   D+++  G G+
Sbjct: 434 ASSKELAGVLADNLQNNDLVLTQGAGN 460


>gi|153839043|ref|ZP_01991710.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|260363428|ref|ZP_05776276.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
 gi|31076799|sp|Q87SG3|MURC_VIBPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149747471|gb|EDM58419.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|308114671|gb|EFO52211.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
          Length = 485

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 148/472 (31%), Gaps = 67/472 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEA 70
           L     I      E  + E     R +  G  +F+        GH    QA  + + A  
Sbjct: 43  LNEGYEITGSDLSENPVTE-----RLVSKGATVFI--------GH----QASNVEK-ASV 84

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + ++          I +V   R+   L+      +G      +AV GT GK++
Sbjct: 85  VVVSTAINEENPEVMAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTT 135

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V QI   +GL    +     + S   + RL +   +      S  S          
Sbjct: 136 TTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------- 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+  DH+D +             F   LP    AI+  
Sbjct: 188 -------------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCI 234

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   +E++ R                 I          K    +     + D    +PG
Sbjct: 235 DDPVIRELIPRISRQVITYGFSDDADVRIENYHQEGQQGKFT-VVRKGRANLDITLNIPG 293

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHT 365
                NA  A  +     I+   +L+ +        RF+ +G    G     +  DY H 
Sbjct: 294 RHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHH 353

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE 423
              +++ +K  R+    + +V+        + +        +     D+ I+ D     E
Sbjct: 354 PTEVDVTIKAARSGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGE 412

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P        +   I   G    I      +       ++   D+++  G G
Sbjct: 413 KPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGAG 464


>gi|326803773|ref|YP_004321591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651338|gb|AEA01521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 462

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 119/362 (32%), Gaps = 39/362 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +         ++ +TG++GK++  S + +I Q +   + +                 
Sbjct: 107 ELLAWFNQ---AEVIGITGSNGKTTTTSLLGEILQGAKELTGKTEVAGN----------- 152

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               I +    +         + +E SS  L    ++  +    +  +L   H+DYH + 
Sbjct: 153 ----IGIPALTASQGLSSQDRLVLELSSFQL--MGIETFRPHIAAIIDLYPTHLDYHGSI 206

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  A      +    +   ++  D     +  K +      +       K     +  
Sbjct: 207 ENYL-AAKWRITKNQGPDDYLLLNYDQEILWQKAKESSAQIIPISIESELEKGAWYNEKE 265

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   T+      F      PG+  V NALVA  +   +G+ +A +     + H V 
Sbjct: 266 GTLMWGSETVLKREDLFL-----PGKHNVQNALVALAIAKLLGVSNASIQTACSQFHGVK 320

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +FV             A  + +    L++ +       +V    G DR  G + ++ 
Sbjct: 321 HRIQFVDQIKERRFYNDSKATNNEASITALRSFKE-----PLVWIAGGLDRGNGVKELLK 375

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           ++    A +A+        E  +K        GI       N  EA + A  +    DV+
Sbjct: 376 ELGQVHALVAM-------GETQDKFIDLANKAGISQISVAKNIEEATQAAYRLSQPGDVI 428

Query: 463 VV 464
           ++
Sbjct: 429 LL 430


>gi|146281469|ref|YP_001171622.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri A1501]
 gi|189029022|sp|A4VIH9|MURC_PSEU5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145569674|gb|ABP78780.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas stutzeri A1501]
 gi|327479644|gb|AEA82954.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri DSM
           4166]
          Length = 485

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 135/426 (31%), Gaps = 64/426 (15%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVSSA +  +    +     I VV    + L+      +G      +AV GT G
Sbjct: 76  AGADVLVVSSAINSANPEVALALEQRIPVVPRA-EMLAELMRYRHG------IAVAGTHG 128

Query: 126 KSSVASFVQQICQRSG-LSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           K++  S +  +    G   +F IG     +  ++    +R                    
Sbjct: 129 KTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGSSRYLIAEADE------------ 176

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                    S     H    ++ +    TN+  DH+  +             F   LP  
Sbjct: 177 ---------SDASFLH----LQPMVAVVTNIDADHMSTYGGDFGKLKKTFVEFLHNLPFY 223

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD   +E++ +                   +             +    +  D
Sbjct: 224 GLAVLCVDDPVVREIIPQIGR-PTTTYGFSEDADVRAINVRQEGMRTYFTVLRDGCEPLD 282

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRI 358
               +PG   V NAL    +    GID   +++ L +   V  RF+  G          +
Sbjct: 283 VSVHMPGNHNVLNALATIAIATDEGIDDEAIVQGLAEFAGVGRRFQVYGNLPVDGGSVML 342

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVT 416
             DY H    +  ++K +R     R +V+        + +       ++  + +++ ++ 
Sbjct: 343 VDDYGHHPREVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVQVLGE-SNVLLLM 401

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVL 462
           +  P  E+P       I G        +  +        +   +++           D+L
Sbjct: 402 EVYPAGEEP-------IPGADSRQLCHSIRQRGQLDPIYVERGVDLAPLVKPLLRAGDIL 454

Query: 463 VVAGKG 468
           +  G G
Sbjct: 455 LCQGAG 460


>gi|118444015|ref|YP_877138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           novyi NT]
 gi|158512394|sp|A0PXN6|MURD_CLONN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118134471|gb|ABK61515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium novyi
           NT]
          Length = 458

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 115/361 (31%), Gaps = 49/361 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  I  +TG+ GK++  + V  I    G  ++  G          +         
Sbjct: 111 FIKYCPAKIFGITGSDGKTTTTTLVYNILMTEGYKTWVGGNIGNPLFSNIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L        ++     TNL  +H+D H+    Y +
Sbjct: 162 ---------EMKEEDKVVLELSSFQL---MTMKEEINCALVTNLSPNHLDIHKDMDEYVD 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+     +   +   +D  +  V +                +F   +++ +    
Sbjct: 210 AKKNIFKYQEVNDLLVLNRDNDITNSLVKEAK----------SRVMQFSRKEEIESGAYL 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               + + GK+   L  +          L+AA   ++       + +       V  R E
Sbjct: 260 NGDKLVLLGKEVCALEDIKLKGMHNVENLLAAFCLVSEDASIESMAKVATTFTGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV             A +       L+        + +++   G D+     P+    A 
Sbjct: 320 FVREIDGVKYYNDSIASSPTRTIAGLRAFE-----KPVILIAGGYDKHIPFEPL----AE 370

Query: 408 DLADIA---IVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDV 461
           +  D     ++T    N   +  +K   +   GI   I   +   EAI  A ++ N+ D+
Sbjct: 371 EGLDKIQALVLTGLTKNKIKDAFDKAMKD--RGINIPIYMEDGFNEAIYRAKDIANEGDI 428

Query: 462 L 462
           +
Sbjct: 429 I 429


>gi|289677699|ref|ZP_06498589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 448

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 122/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYNGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             ++++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENSEKYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +P  +       A+  + ++  + D ++
Sbjct: 366 APVAKYCRAAVL-----LGRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLALRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|222097903|ref|YP_002531960.1| folylpolyglutamate synthase [Bacillus cereus Q1]
 gi|221241961|gb|ACM14671.1| folylpolyglutamate synthase [Bacillus cereus Q1]
          Length = 407

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 114/386 (29%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 16  KCVHLAGTNGKGSTLTYMRYMLENAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 75

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 76  KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 134

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CR 266
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 135 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENQAN 194

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  +G     +H +                 +D         +       + A + + I 
Sbjct: 195 LYEMGNHFTSLHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKIY 254

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 255 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 311

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 312 NVIVLFTALGDKQLHN---MVGQLESIADEIIFTT---FAFDRAISAGELASYAKEESKL 365

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EML + DV ++ G
Sbjct: 366 VFDNWKEAIDTKVEMLGENDVFIITG 391


>gi|210608677|ref|ZP_03287954.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
 gi|210152934|gb|EEA83940.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
          Length = 450

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 101/298 (33%), Gaps = 19/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + L  +  +    E SS  L+   +   +    +  N+  DH++ H T +AY 
Sbjct: 144 IGNPYTAAALEMREDSVAVAEMSSFQLET--IHEFRPKVSAILNITPDHLNRHHTMEAYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  + +    +++  + Y +D  ++++ +          S     + I+L     I  
Sbjct: 202 KAKEDIAKNQTKEDTCVLNY-EDEVTRKIGENVKANVLYFSSQRKLDRGIYLDDGNIILR 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +  +     +      L G     N + A  +  A G    ++   +++   V  R E
Sbjct: 261 QDEEILVCNVNEL----KLLGTHNYENVMAAVAMAAAYGTPMEVIRRTIKEFAGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV                 ++    ++        R  V+ G G D+D      +     
Sbjct: 317 FVREKDGVAYYNDSKGTNPDAAIKGIQA-----MNRPTVLIGGGYDKDSEYEEWIQAFDG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + +V          EKI       G   ++   +  EA+   IE     D +++
Sbjct: 372 KVKLLVLV------GATKEKIAEAAERVGFVSYVMADSFEEAVEKCIEAAEPGDAVLL 423


>gi|109892723|sp|Q3IFY1|MURC_PSEHT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 145/447 (32%), Gaps = 59/447 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R I+AG  +F+   G+ E+    +  A       +VVSSA    +          + VV 
Sbjct: 58  RLIKAGAEVFI---GHHENN---VKDA-----NVVVVSSAIDETNPEIIAAKAARVPVV- 105

Query: 97  NTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTI 153
             R+   L+      +G      +A+ GT GK++  S +  I  ++G   +F IG     
Sbjct: 106 --RRAEMLAELMRFRHG------IAIAGTHGKTTTTSLIASIYAQAGLDPTFIIGGLLNS 157

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +        +        ++ +                          ++ +    TN+ 
Sbjct: 158 AGSNAKVGKSDFLIAEADESDASFLH----------------------LQPMVSVITNIE 195

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH++ +             F   LP    A++  D   + E++ R              
Sbjct: 196 EDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVASELIPRFGRPVITYGESSDA 255

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +      A   K  VT + +G+       +PG+    NA  A  +     I +  +L
Sbjct: 256 DYRMSDFSQSANTCKFTVT-NKQGESLTATLNMPGKHNALNATAAIAVAKDQNIANFAIL 314

Query: 334 EHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           E L+K   +  RF+  G          +  DY H  + +   +   R     + +V+   
Sbjct: 315 EALQKFEGIGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGWPDKRLVMVYQ 374

Query: 391 GG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEK 442
                R +       K+  +  D  ++ D     E+P      + +   +          
Sbjct: 375 PHRFTRTRDLYEDFVKVLAE-VDQLLLLDVYSAGEEPIVGADSKSLCRSLRQRGKEPRHV 433

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            N  E      + L   D+++  G G+
Sbjct: 434 ANSAELASVLADCLQNNDLVLTQGAGN 460


>gi|323342441|ref|ZP_08082673.1| folylpolyglutamate synthase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463553|gb|EFY08747.1| folylpolyglutamate synthase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 407

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/381 (14%), Positives = 110/381 (28%), Gaps = 31/381 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+ L+   +    +     + + GT+GK S  ++ + I Q +G S              +
Sbjct: 26  RQCLADMGN---PQDSLTCIHIGGTNGKGSTTNYTRAILQEAGYSVGTFTSPHLTVHNDR 82

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF--------- 209
                             ++        +      +    L  I                
Sbjct: 83  IRINNENISDSDLLMYINVTEPFWDQYQLSMFEIDVLISILYFIDNDIDYAIYEVGLGGR 142

Query: 210 ---TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+ +  I             +    E +  E   II  +  +     K +      
Sbjct: 143 LDATNVIQPVITGITNIGLDHMNILGDTIEKIATEKAGIIKMNVPFFTTERKDSCLEVFS 202

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             +   Q     +               V  + +        +    +  +     +   
Sbjct: 203 YFTDLKQTNMHQVMIPEPKREGLAYYFDVLEEPYVIQNQGLYQVGNASLAIHLVKALPHI 262

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                 +++        GRFE V        +YVD AH    +EM+++++  +     + 
Sbjct: 263 TVDTKTIQNAIASASWAGRFEPVLDG-----VYVDGAHNEMGIEMLVRSM-EMLPRPWVA 316

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VF    D+D     +M      + D  I+T  D  RSE     RAE +          ++
Sbjct: 317 VFTALKDKDYT---LMINKLESVFDEVIITQFDFYRSE-----RAEKLAFGHNVTIIEDQ 368

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +AI T ++  N    + + G
Sbjct: 369 YKAIDTGMKHRNNGTCV-ITG 388


>gi|148828299|ref|YP_001293052.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
 gi|166224694|sp|A5UIR3|MURC_HAEIG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148719541|gb|ABR00669.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
          Length = 475

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 119/376 (31%), Gaps = 41/376 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA    +    A+ +   P++      + L+      +G   
Sbjct: 67  YIGHAAEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG--- 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I       +                +           A 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIAE 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  S     H+    S                   TN+  DH+D ++       A    F
Sbjct: 174 ADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +                 I   +             
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VFC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   R
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIR 335

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDL 409
                R+  DY H    +++ +K  R     + IV+        + +       ++   L
Sbjct: 336 PNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLS-L 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|167040634|ref|YP_001663619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter sp. X514]
 gi|300914675|ref|ZP_07131991.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307724091|ref|YP_003903842.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
 gi|226722952|sp|B0K3H2|MURD_THEPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166854874|gb|ABY93283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           sp. X514]
 gi|300889610|gb|EFK84756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307581152|gb|ADN54551.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
          Length = 454

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 101/300 (33%), Gaps = 20/300 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + + +     +  E SS  L+   +   K       N+  DH+D H+T + Y 
Sbjct: 143 IGYPLIYAVMEAAEDDFIVAEISSFQLET--IKEFKPKISCIINITPDHLDRHKTFENYR 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K R+FE     E   + Y DD  +  +  +A                 ++K      +
Sbjct: 201 DIKGRIFENQREDEYTVLNY-DDPVTWSLKNKAKCRVFPFSRKSLLENGAYIKDGSIYIS 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  +   +  +   +PGE  + NAL A+ +    GI + ++   L+    V  R E
Sbjct: 260 VNGNAEKIIDIEEIY---IPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++ +      +  +V   GG     +     K   
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQAL------KTPIVLIAGGYDKGSEFDEFVKAFN 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       +  +KIR             +  G   EA++ A E   + D +++
Sbjct: 371 GKVKKLILI-----GQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|28897235|ref|NP_796840.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28805444|dbj|BAC58724.1| UDP-N-acetylmuramate-alanine ligase [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 490

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 148/472 (31%), Gaps = 67/472 (14%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEA 70
           L     I      E  + E     R +  G  +F+        GH    QA  + + A  
Sbjct: 48  LNEGYEITGSDLSENPVTE-----RLVSKGATVFI--------GH----QASNVEK-ASV 89

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + ++          I +V   R+   L+      +G      +AV GT GK++
Sbjct: 90  VVVSTAINEENPEVMAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTT 140

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V QI   +GL    +     + S   + RL +   +      S  S          
Sbjct: 141 TTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------- 192

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+  DH+D +             F   LP    AI+  
Sbjct: 193 -------------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCI 239

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   +E++ R                 I          K    +     + D    +PG
Sbjct: 240 DDPVIRELIPRISRQVITYGFSDDADVRIENYHQEGQQGKFT-VVRKGRANLDITLNIPG 298

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHT 365
                NA  A  +     I+   +L+ +        RF+ +G    G     +  DY H 
Sbjct: 299 RHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHH 358

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE 423
              +++ +K  R+    + +V+        + +        +     D+ I+ D     E
Sbjct: 359 PTEVDVTIKAARSGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYAAGE 417

Query: 424 DP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P        +   I   G    I      +       ++   D+++  G G
Sbjct: 418 KPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPSVLANVIQDGDLILTQGAG 469


>gi|109899822|ref|YP_663077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
 gi|109702103|gb|ABG42023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
          Length = 441

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/397 (14%), Positives = 127/397 (31%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS   SL+  +     +  + V+ +         +         +LAVTG++GKS
Sbjct: 64  ADMLVVSPGLSLKTPAINAAIDAGVQVIGDI-----ELFAMFNNTP---VLAVTGSNGKS 115

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +VA+   ++C  +G  +   G                   + L +  + +       + +
Sbjct: 116 TVATLAYEMCLAAGKKALLGGNIGIP-------------ALELLEKDADI-------IVL 155

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++       NL  DH+D H    +Y  AK+R++ +           
Sbjct: 156 ELSSFQLET--TYTLRPHVACMLNLSDDHLDRHGDMLSYQRAKLRIYRDARFSVCNRDDA 213

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A    +         +         +     L       +     +  E    +      
Sbjct: 214 ATWPMTINPDVMFGLSSSERGLSWNKDTAHILLDGKDFLDSHACMLVGEHNMLNIQ---- 269

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                     A  + +  GID   +         +  R + V  +     I    A    
Sbjct: 270 ---------AATAMAMLAGIDLTAIKLAATSFAGLAHRCQTVAVSHHVRWINDSKATNVG 320

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +  +     G++I++ G  G +     P+  +  + + ++  +  D P+      
Sbjct: 321 ATIAAIDGLSPTCKGKLILIAGGDG-KGADFSPLEERFNVQVNELITLGKDGPK------ 373

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AE+        +     +A++ A  +      +++
Sbjct: 374 -LAELKA---NSHQVATLDDAVQLAATLAEGDATVLL 406


>gi|319782849|ref|YP_004142325.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168737|gb|ADV12275.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 468

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 96/283 (33%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +      A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPAEIAVVTNIDPEHLDHYGSFDKVREA-FRQFVENVPFYGFGVMCTDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNA 315
           +          Q          +    +   +  + K            P+PG   V NA
Sbjct: 232 DRRVITYGENAQADVRFTNHRMSGAISEFDVVIRDRKTGGQTVIAGLRLPMPGRHNVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +G+ +  + + L     V  RF   G +  G  I+ DY H    +  +LK 
Sbjct: 292 TAAIAVAHELGLSAEAIKKGLSSFAGVKRRFTHTG-SWDGVEIFDDYGHHPVEISAVLKA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R+ T GR+I +      R      +  + +     AD  +V       E+P      + 
Sbjct: 351 ARSATQGRVIAI--AQPHRFTRLHDLFNEFSTCFNDADTVMVAPVYAAGEEPIDGVSSDA 408

Query: 428 IRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           + + I  G            AI     ++    D +V  G G+
Sbjct: 409 LVSRIRAGGHRDARYIEGPAAIAPIVRDLAKPGDFVVFLGAGN 451


>gi|300726291|ref|ZP_07059744.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bryantii B14]
 gi|299776488|gb|EFI73045.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bryantii B14]
          Length = 458

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 109/351 (31%), Gaps = 40/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L   GT GK++ ++    I  +S L         + +             + +    
Sbjct: 112 HKGLCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKNYGTNYILSDKSDYVVIEADE 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S                       ++      T+   DH+D + T++AY  +     
Sbjct: 172 FDRSFHW--------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E +    +  I    +      +K   +   +  +        H + +   + +    + 
Sbjct: 212 ELIQDGGALIIHTNLE------VKPNVSDKVKTFTYSRDEGDFHAENININNGEITFDLV 265

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++        P    + N++ A  +    G  +  +   ++    V  RF+F    +
Sbjct: 266 SPIENVKGIQLGQPIPINIENSIAAMAMAQLNGCTAEELKYGMQTYTGVDRRFDF-KIKN 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLAD 411
                  DY H    +    K+++ +   R I          R +       + AL L D
Sbjct: 325 NKHVFLSDYGHHPKEVMQSAKSLKELYPNRKITAMFQPHLYTRTRDFYKDFAE-ALSLFD 383

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             ++T+  P  E+P       I G+   +   N  E I    +M+ K DVL
Sbjct: 384 EVVLTEIYPAREEP-------IPGVTSKLIYDNLKEGIEK--DMILKDDVL 425


>gi|295688559|ref|YP_003592252.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
 gi|295430462|gb|ADG09634.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
          Length = 470

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 122/393 (31%), Gaps = 70/393 (17%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF------------------ 105
           IA GA+  +     + ++ +A        L   + R+F +L                   
Sbjct: 29  IAGGAKVALWDEKVASREAAAAEGFPVVDLETADWRQFAALMLSPGVPLTHPKPHWTVQK 88

Query: 106 --------------------ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                               A+ ++ +    I+A+TGT+GKS+  + +  +C  +G  + 
Sbjct: 89  AKAAGVEILGDIELFARTVAAAPVHKRP--KIIAITGTNGKSTTTALIGHLCASAGRDTR 146

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G         +D        + L                   SS+ LD      +   
Sbjct: 147 IGGNIGQGVLGLEDMHGGAVYVLEL-------------------SSYQLDL--TSSLHPD 185

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           A    N+  DH+D H     Y  A  R       K   AII  DD + +++      A  
Sbjct: 186 AVVLLNISPDHLDRHGGMDGY-IAAKRRIFLNQGKGDTAIIGVDDPWCQQICTEITAANR 244

Query: 266 RVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           R +     G      +  +  +         VE  D      LPG     NA  A     
Sbjct: 245 RTIWPISAGKAMGRGVYALQGVLYDATGERVVEVADLLRARSLPGRHNWQNAAAAYAAAR 304

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-- 381
           AIGI     ++ L     +  R E VG   +   +    A  +++    + +        
Sbjct: 305 AIGIPMQDAVDGLMTFPGLAHRMETVGKIGKVRFVNDSKATNADAARQAMSSYPKFYWIA 364

Query: 382 GRIIVVFGCGGDRD----QGKRPIMGKIALDLA 410
           G +    G    +D      K  ++G+ A   +
Sbjct: 365 GGVAKAGGIDDLKDLFPRVAKAYLIGEAAEPFS 397


>gi|225575651|ref|ZP_03784261.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037108|gb|EEG47354.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
          Length = 459

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 88/273 (32%), Gaps = 10/273 (3%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+D+ +  +   ++  RLF E LP +   II +D     E+++    
Sbjct: 178 FPKISLILNIDADHLDFFKDIEDIRHS-FRLFAEKLPADGTLIINSDTDKYTEIIRDLPC 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                             +           +        +   +PG   V NAL    L 
Sbjct: 237 EIITYGLNSNADYTAQNIQYNEYGYATFDCVKDGVNLGTYSLSVPGIHNVSNALATLVLG 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G++S  +   L+       RF++ G       +  DYAH    ++  L   +     
Sbjct: 297 FKLGLNSEALKTGLKHFQGTDRRFQYKG-KVGEVTVIDDYAHHPTEIKATLTAAKNYPHK 355

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHG 435
            +  VF      R +   P   + AL  AD  ++ D     E          ++ +I+  
Sbjct: 356 SLWCVFQPHTYTRTKALLPEFAR-ALTFADHVVLADIYAARETDNLGISSRDLQKQILEL 414

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                      E     +E     D+L+  G G
Sbjct: 415 GTDCHYFSTFDEIENYLLENCIPGDLLITMGAG 447


>gi|149918773|ref|ZP_01907260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
 gi|149820374|gb|EDM79790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
          Length = 482

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 28  RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIR 87
           R I     DSR    G +FV IV  + DGH FIP A+A GA A +V          A   
Sbjct: 22  RPIQAAFIDSRTPTPGGLFVPIVAAR-DGHDFIPAALAAGASATLVGPG----RGEAVPE 76

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +  ++ V +T + L+  A     +    ++A+TG++GK++ 
Sbjct: 77  GDFTVVEVGDTLEGLTQLARDARAQLDGPVVAITGSNGKTTT 118


>gi|170720128|ref|YP_001747816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida W619]
 gi|169758131|gb|ACA71447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           W619]
          Length = 448

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 122/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 85  ALQQAAARGVKLSGDIELFARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKHVAVGGNL 144

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T               + L      L         +E SS  L+    D +     +  
Sbjct: 145 GTP-------------ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVL 182

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +       G    S 
Sbjct: 183 NISEDHMDRYSGLPAYHLAKHRIFRGARQ----VVVNRQDALSRPL----PVEGRPCWSF 234

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 235 GLNQPDFKAFGLREVDGEKYLAFEFQALMPARELKIRGAHNQSNALAALALGHAAGLPFE 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V   S         A    +    ++ +     G+  +V   
Sbjct: 295 PMLEALREFGGLAHRCQWVRARSGVNWYDDSKATNVGAALAAIEGLGADIDGK--LVLIA 352

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGD        + +         ++        D +++   +   +P  +      EA++
Sbjct: 353 GGDGKGADFAALREPVARFCRAVVL-----LGRDADRLAEALGDAVP-LVRVKTLDEAVQ 406

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 407 QCAELAVPGDAVLL 420


>gi|237747015|ref|ZP_04577495.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes HOxBLS]
 gi|229378366|gb|EEO28457.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 79/436 (18%), Positives = 134/436 (30%), Gaps = 61/436 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH   P+ I + A+AIVVSSA    +          + +V   R   L+           
Sbjct: 56  GH--APENIEK-ADAIVVSSAIRDDNPEVLAARKKNVPIVP--RAVMLAELMRL------ 104

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +A+ GT GK++  S V  +    G     +     ++S   +  L     I      
Sbjct: 105 KRGIAIAGTHGKTTTTSLVASVLAEGGFDPTFV-IGGRLNSAGANAGLGAGDFIVAEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH+D +    A        F
Sbjct: 164 SDASFLN--------------------LNPVIEVITNIDADHMDTYGHDFARLKQAFVEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + LP     ++  DD+  +E+ K   +                +             + 
Sbjct: 204 TQRLPFYGRVMLCIDDSNVREI-KPFISKPITTYGFHEDADVRAIDARAEGTLMIFTALQ 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-------- 346
                 +     PG   V NA     +   +GI+ + +   +EK   V  RF        
Sbjct: 263 KGHPPLEICLNQPGMHNVQNACAVIAIARELGIEDSAIQRAMEKFTGVNRRFTRLGKIRL 322

Query: 347 -EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            +  G       +  DY H  + +   L   R     R  +V      R    R +    
Sbjct: 323 PQKDGEKIAEVELVDDYGHHPSEMAATLAAARGAYPNRR-LVLVFQPHRYTRTRDLFEDF 381

Query: 406 ALDLA--DIAIVTDDNPRSEDPEKIRAEII--------HGIPGFIEKGNRIE---AIRTA 452
              L+  D+ ++ +  P  E P  I A+           G    +   +  E   A+   
Sbjct: 382 VKVLSATDVLLLGEVYPAGEQPI-IAADGRTLARTIRVAGKVDPVFVEDIAEMPSAVLNV 440

Query: 453 IEMLNKQDVLVVAGKG 468
           IE     DV++  G G
Sbjct: 441 IED---GDVVITMGAG 453


>gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
 gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
          Length = 419

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 128/356 (35%), Gaps = 42/356 (11%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           Y     +++AVTGT GKS+ +  +  I       +   G   T  S        T     
Sbjct: 75  YRFFDGSVIAVTGTDGKSTTSKLIHHIIGEE--KADIGGNYGTPFSDIVSEGKDT----- 127

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                          V +E SS  +  +  +  +     F N   DH+D+H+    Y  +
Sbjct: 128 ---------------VVLELSSFQI--YSTEMFRPDIAVFLNFYPDHLDWHKKLLHYRLS 170

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMK-RAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           K RLF  +  ++   + + D        K + +      L    +G +    ++    N 
Sbjct: 171 KYRLFRNMKEEDPAVLNFDDQVVRNTPKKGKRYYFSLSPLPDNLEGAYYDGSEIVLKING 230

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +    +       +  +       N + +       GID   + E L+    +P R E+
Sbjct: 231 FKFKFGLSDIHLKGIHNI------QNIMASVVTAYIYGIDPETIEERLKSFKPLPHRMEY 284

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG+ +         A T  +++  +++      G+ +++   G ++      +  ++   
Sbjct: 285 VGSINGVDFYNDSKATTVQAVKKAVQSF----DGKRVILITGGINKGGDFSDLRDELLNS 340

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + ++ I+        D + I + I   +     K +  +A+ TA +   K DV+++
Sbjct: 341 VKEVFII------GRDRKSIYSMIKDYV-KAEIKESLEDAVNTAFKKAEKGDVILL 389


>gi|193214550|ref|YP_001995749.1| UDP-N-acetylmuramate--L-alanine ligase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088027|gb|ACF13302.1| UDP-N-acetylmuramate/alanine ligase [Chloroherpeton thalassium ATCC
           35110]
          Length = 470

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 114/416 (27%), Gaps = 46/416 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV SSA   +       +    + V    + L     R  G      + + GT GK
Sbjct: 67  GADVIVHSSAVKPEMNEEVQEAFARQIPVIKRDEMLGELMRRKAG------ICIAGTHGK 120

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  + V  + +      +  IG  S   + +          I                 
Sbjct: 121 TTTTTMVGTMLKECHEDPTVIIGGISDYFNGSAVVGNGNYMVIE---------------- 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                    +  R                                   F   +P     I
Sbjct: 165 -------ADEYDRTFLKLTPTIGVITTLEAEHLDIYKDLDDLKQAFVQFANTVPFYGAVI 217

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LF 304
              D+     ++         +         +  K+V         T++  GK       
Sbjct: 218 CCIDEPAIAAIL--PCLNRRVITYGLTPEAELQAKEVVFHGKTAHFTVTHLGKPLGKLEL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--NSRGGRIYVDY 362
             PG   V NAL    + + +G++   +   L     V  RF    +     G  +  DY
Sbjct: 276 KAPGLHNVKNALATVAVGLELGLEFDSICRALASFQAVRRRFHVKYSDGEPNGLMVIDDY 335

Query: 363 AHTSNSLEMILKNIRTITSGRI-IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AH    +   L+  R        I VF      R Q      GK AL LAD  IVTD   
Sbjct: 336 AHHPTEVRATLEAARLGWPKHHLIAVFQPHLFSRTQTFADEFGK-ALALADEIIVTDVYA 394

Query: 421 RSEDPEK--------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E  E         +   +            + + I+  +   +   +++  G G
Sbjct: 395 SREKAEDFIGVSGDLVVRAVQKAGGKASYIEQKSDIIQQLLNRASAGQMIITMGAG 450


>gi|171057214|ref|YP_001789563.1| UDP-N-acetylmuramate--L-alanine ligase [Leptothrix cholodnii SP-6]
 gi|229620039|sp|B1XYR4|MURC_LEPCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170774659|gb|ACB32798.1| UDP-N-acetylmuramate--alanine ligase [Leptothrix cholodnii SP-6]
          Length = 469

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 88/447 (19%), Positives = 145/447 (32%), Gaps = 70/447 (15%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LS 103
           IFV        GH     A   GA+A+V S+A    +          I VV   R   L+
Sbjct: 53  IFV--------GHD---AAHIAGAQAVVTSTAVKGDNPEVIAARAARIPVVP--RAVMLA 99

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRL 162
                  G      +A+ GT GK++  S V  +   +G   +F IG    ++S   ++ L
Sbjct: 100 ELMRLKSG------IAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIG--GKLNSAGANSAL 151

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                I +    S  S                       +  +    TN+  DH+D +  
Sbjct: 152 GKGDYIVVEADESDASFLN--------------------LLPVLSVITNIDADHMDTYGH 191

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A        F   +P    AI+  DD   + ++    +       +G   +   +  V
Sbjct: 192 DFARLKQAFVEFLHKMPFYGAAILCGDDPGVRSIIP-MISRPVITYGLGEDVQVRAVDVV 250

Query: 283 CAIHNKQQVTISVEGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                + + T          D +    LPG   V NAL    +   + +  A ++  L K
Sbjct: 251 ALPGGQMRFTCQRRNGTVLPDLEITLNLPGVHSVRNALATIAVATELELPDAPIVSALAK 310

Query: 339 LHVVPGRFEFVGTNSR----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV----FGC 390
              V  RF+  G           +  DY H    +  ++   R    GR +V+       
Sbjct: 311 FSGVGRRFQRWGDWPCAAGGEFTLIDDYGHHPVEMAAVIAAARGAFPGRRLVLAFQPHRY 370

Query: 391 GGDRD--QGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIE 441
              RD  +    +MG      AD  ++T+     E P        +   +   G    + 
Sbjct: 371 TRTRDCFEDFVKVMGS-----ADAILLTEVYAAGEAPIVAADGRSLTRALRVAGKVDPLF 425

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  E   T  E     DV++  G G
Sbjct: 426 VDDVNELPATIAEQALAGDVVIAMGAG 452


>gi|319424766|gb|ADV52840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella
           putrefaciens 200]
          Length = 439

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 127/397 (31%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +L         +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + +         +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGVP-------------ALDLLSENAEI-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDA 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                          A       G     I+  +   +                    L 
Sbjct: 220 LTIPTEPMNQNSFGLAPPEGDEWGICDSKIYHGRSEIMPIT--------------EVSLI 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+G+D  ++ +       +  R E VG       +    A    
Sbjct: 266 GSHNHANLLAAMALVYAVGVDKQVMAKVARTFTGLSHRCEVVGIKGGVTYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +         ++   GGD   GK      +   L+    VT       D  K
Sbjct: 326 ATVAALDGLSDHLGD---IILIAGGD---GKGADFSPLVEPLSK---VTHLITLGRDGNK 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A +  G    I+  +   A+  A  +    D++++
Sbjct: 377 IAA-LKEG---AIKVDSMAAAVAKAAALATSGDIVLL 409


>gi|167037226|ref|YP_001664804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115645|ref|YP_004185804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226722951|sp|B0K8K5|MURD_THEP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166856060|gb|ABY94468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928736|gb|ADV79421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 454

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 101/300 (33%), Gaps = 20/300 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + + +     +  E SS  L+   +   K       N+  DH+D H+T + Y 
Sbjct: 143 IGYPLIYAVMEAAEGDFIVAEISSFQLET--IKEFKPKISCIINITPDHLDRHKTFENYR 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K R+FE     E   + Y DD  +  +  +A                 ++K      +
Sbjct: 201 DIKGRIFENQREDEYTVLNY-DDPVTWSLKNKAKCRVFPFSRKSLLENGAYIKDGSIYIS 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  +   +  +   +PGE  + NAL A+ +    GI + ++   L+    V  R E
Sbjct: 260 VNGNAEKIIDIEEIY---IPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++ +      +  +V   GG     +     K   
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQAL------KTPIVLIAGGYDKGSEFDEFVKAFN 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       +  +KIR             +  G   EA++ A E   + D +++
Sbjct: 371 GKVKKLILI-----GQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|325690202|gb|EGD32206.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK115]
          Length = 459

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 129/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 ALTAGGQNGLLSGNIGYPASQV------------------AQTASSKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEDFHPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQAAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LAMIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+     R       RA  + G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAAR-----VKRAADLAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A       D++++
Sbjct: 403 VS-YLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|317501878|ref|ZP_07960063.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088609|ref|ZP_08337520.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896768|gb|EFV18854.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407566|gb|EGG87066.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 461

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 82/275 (29%), Gaps = 10/275 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH+D+ +  +   ++    F ELLP++   II A+     E+ +  
Sbjct: 176 HFFPKISVILNIEEDHLDFFKDLEDIRHS-FHQFAELLPEDGTLIINAEIKDYAEIYEGL 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G               +                  + G+  V NAL A  
Sbjct: 235 SCNVVTYGTNGCFDYSAKNITYDENGHVAFDLFRRGEYADHIQLSVTGDHNVSNALSAIA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G+   +    L        RFE+ G    G  +  DYAH    +   LK  +   
Sbjct: 295 VADILGLSIDITKRGLLSFTGTDRRFEYKG-EFNGVTVIDDYAHHPTEILATLKAAQHSL 353

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
              +  VF      R +       + AL  AD  ++ D     E          +  E  
Sbjct: 354 HNSVWCVFQPHTYTRTKAFFHEFAE-ALSHADHLVLADIFAARETDTLGISSADLAKETE 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +  +      E     D+L+  G G
Sbjct: 413 KLGTDTHYFPSFAQIEAFLKENCRPGDLLITMGAG 447


>gi|297626709|ref|YP_003688472.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922474|emb|CBL57047.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 480

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 102/276 (36%), Gaps = 19/276 (6%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV---MKRAHNAG 264
             TN+  DH+D   + +    A+        P     +I ADDA ++E+   ++R  +  
Sbjct: 187 VITNVEADHLDNWGSAE--HYARGFERFATGPTVRDVVIDADDAGARELTGKLRRLASGP 244

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                         L  +         T+  +G ++     +PG   ++NA  A      
Sbjct: 245 TVTTYGEADDADARLSDIEFSGMHSSATLHFQGHEYALRLSVPGRHNLWNAAAAFVTGRL 304

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTI-T 380
           +G+ +  +L   +       RF+ +G+ +       ++ DYAH    +   L   R +  
Sbjct: 305 LGLAADDLLRGAQAFAGTLRRFQPLGSATLPDGQVHVFDDYAHHPTEIRAALNAGRRVAG 364

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII 433
             R++  F      R +      G+ AL LAD+ +VTD     E+P      + +    +
Sbjct: 365 DHRLVACFQPHLYSRTREFATEFGR-ALALADLVVVTDIYGAREEPVPGVSGKLVADAAV 423

Query: 434 HGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                     N+ E  +  A  ++   D ++  G G
Sbjct: 424 EAGADTYYVPNKAELPVELA-ALVRGGDFVLTLGAG 458


>gi|120597219|ref|YP_961793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. W3-18-1]
 gi|120557312|gb|ABM23239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           W3-18-1]
          Length = 439

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 127/397 (31%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +L         +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + +         +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGVP-------------ALDLLSENAEI-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDA 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                          A       G     I+  +   +                    L 
Sbjct: 220 LTIPTEPMNQNSFGLAPPEGDEWGICDSKIYHGRSEIMPIT--------------EVSLI 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+G+D  ++ +       +  R E VG       +    A    
Sbjct: 266 GSHNHANLLAAMALVYAVGVDKQVMAKVARTFTGLSHRCEVVGIKGGVTYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +         ++   GGD   GK      +   L+    VT       D  K
Sbjct: 326 ATVAALDGLSDHLGD---IILIAGGD---GKGADFSPLVEPLSK---VTHLITLGRDGNK 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A +  G    I+  +   A+  A  +    D++++
Sbjct: 377 IAA-LKEG---AIKVDSMAAAVAKAAALATSGDIVLL 409


>gi|163846031|ref|YP_001634075.1| FolC bifunctional protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523759|ref|YP_002568229.1| FolC bifunctional protein [Chloroflexus sp. Y-400-fl]
 gi|163667320|gb|ABY33686.1| FolC bifunctional protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447638|gb|ACM51904.1| FolC bifunctional protein [Chloroflexus sp. Y-400-fl]
          Length = 438

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 9/153 (5%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  L           +         PGRFE     +   RI +D AH  +S + + + I
Sbjct: 274 TALLLRDQGVPIDDQAIRRGLAEAWWPGRFEL---IAGPPRILIDGAHNGDSAQKLWQAI 330

Query: 377 R-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIH 434
              +   + I+V G   D+D                  I+T  N P++ D ++I AE+  
Sbjct: 331 SDELPHRQFILVLGTSRDKDIAAIAAALAPQAAH---VIITRSNHPKAMDLDRIAAEVAP 387

Query: 435 -GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                        EA+ TA  +  + D++ V G
Sbjct: 388 FTNAPMQIVPVVAEALATAQALAEQDDLICVTG 420


>gi|239826521|ref|YP_002949145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. WCH70]
 gi|259509789|sp|C5D8M2|MURD_GEOSW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|239806814|gb|ACS23879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           WCH70]
          Length = 451

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 121/362 (33%), Gaps = 43/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + + ++ +         G   T +         
Sbjct: 104 ELAYHISEAP---FIGITGSNGKTTTTTLIYEMLREGEKRPLLAGNIGTAACEV------ 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          ++    +  E SS  L   R    +       N+   H+DYH T+
Sbjct: 155 ------------AKKAEASNWLVTELSSFQLAGIR--DFRPRISVLLNIFDAHLDYHGTK 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK  +F+    ++  A+I ADD    ++ +  H       +    G+  ++    
Sbjct: 201 EAYAQAKANIFKNQTNED-YAVINADDELVMQLAENIHAQKVAFSATKVLGRGAYINNGF 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N + V    +         LPG+  + N L A  +    G+D+  + + L     V 
Sbjct: 260 IYWNDEAVIAVADIV-------LPGKHNLENILAAVAVAKLAGVDNKSIYQVLTTFTGVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R ++V T           A    + +  L           +++   G DR      ++ 
Sbjct: 313 HRLQYVATIDGRKFFNDSKATNILATQKALSAF----EKDSVILLAGGLDRGNEFDALLP 368

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +        ++       +   KI       GI       N  +A+  A ++    DV+
Sbjct: 369 YL--HNVKAVVL-----FGQTAPKIARVAKQAGIETIEYVDNVEKAVPVAYQLSEPGDVI 421

Query: 463 VV 464
           ++
Sbjct: 422 LL 423


>gi|261337521|ref|ZP_05965405.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium gallicum DSM
           20093]
 gi|270277921|gb|EFA23775.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium gallicum DSM
           20093]
          Length = 521

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           +D  +  +     H    RF+  G    G  +  DYAH    +  +L   R       + 
Sbjct: 347 MDPFVAAQAATSFHGAARRFDIKG-TVNGVTVVDDYAHHPTEIAALLTAARRRYPKARLH 405

Query: 387 VFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNP---RSEDPEKIRA----EIIHGI- 436
           V        R Q       + AL LAD  IVT   P   R ED   + A    E   GI 
Sbjct: 406 VLFQPHLFSRTQFFAQEFAQ-ALALADDVIVTGIFPARERQEDFANVTAHTIVEQAEGIT 464

Query: 437 ----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               P   +  +  EA    +E +   DV++  G G
Sbjct: 465 DHAQPWISDMDDMQEAAAAVVERVQPGDVVLTVGAG 500


>gi|256752933|ref|ZP_05493764.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748188|gb|EEU61261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 450

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 101/300 (33%), Gaps = 20/300 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + + +     +  E SS  L+   +   K       N+  DH+D H+T + Y 
Sbjct: 143 IGYPLIYAVMEAAEGDFIVAEISSFQLET--IKEFKPKISCIINITPDHLDRHKTFENYR 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K R+FE     E   + Y DD  +  +  +A                 ++K      +
Sbjct: 201 DIKGRIFENQREDEYTVLNY-DDPVTWSLKNKAKCRVFPFSRKSLLENGAYIKDGSIYIS 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  +   +  +   +PGE  + NAL A+ +    GI + ++   L+    V  R E
Sbjct: 260 VNGNAEKIIDIEEIY---IPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++ +      +  +V   GG     +     K   
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQAL------KTPIVLIAGGYDKGSEFDEFVKAFN 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       +  +KIR             +  G   EA++ A E   + D +++
Sbjct: 371 GKVKKLILI-----GQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|171778709|ref|ZP_02919805.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282666|gb|EDT48090.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 451

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 135/425 (31%), Gaps = 54/425 (12%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS------- 103
           G   D +      + +G + I  S    L D +  +    P +  DN     +       
Sbjct: 40  GKPFDENPAAQSLLEEGIKVICGSHPLELLDENFELMVKNPGIRYDNPMVARAIEKNIPV 99

Query: 104 ----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A  +       I+ +TG++GK++  + + +     G S    G        A +
Sbjct: 100 ITEVELAYMISDAP---IIGITGSNGKTTTTTMIAETLNNGGKSGLLSGNIGFP---ASE 153

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
              T      L                +E SS  L     D         TNL   HIDY
Sbjct: 154 VAQTATDKDTL---------------VMELSSFQL--MGTDTFHPHMAVITNLMPTHIDY 196

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H   + Y  AK  + + +  ++   + +  D  +KE+ ++         +          
Sbjct: 197 HGGFEEYVAAKWNIQKNMTAEDYLVLNFNQD-LAKELAQKTAAQVIPFSTTEKVDGAYLD 255

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                  ++  +  S           +PG   V NAL    +    GI +  + E L   
Sbjct: 256 GDTLYFKDEAIMKAS--------EIGVPGNHNVENALATIAIAKLSGIANEAIKETLSHF 307

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R + +G  +         +     +    K +    + ++I++   G DR     
Sbjct: 308 GGVKHRLQALGEVNGIKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFD 363

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  I      + I+ +  PR      ++         +++  +  +A R A       
Sbjct: 364 ELVPDITGVKL-MVILGESAPR------VKRAADKAQVPYVDAKDVADAARIAYSKAEAG 416

Query: 460 DVLVV 464
           DV+++
Sbjct: 417 DVVLL 421


>gi|84490004|ref|YP_448236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373323|gb|ABC57593.1| predicted UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Methanosphaera stadtmanae DSM 3091]
          Length = 479

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/379 (15%), Positives = 120/379 (31%), Gaps = 27/379 (7%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V+ TRK +S   +R+    P + + +TG+ GK++    +  I + +G + +Q       
Sbjct: 94  KVEVTRKTISDIINRIL---PMDKIGITGSFGKTTTTDMLTNIFKAAGYNVYQCSS---- 146

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
                         I             +  + +   + GL    +  I L  G  TNL 
Sbjct: 147 -----MKWNLVSEAIVDDIVKGEYIGADIAILELPHGTLGL----MGEIDLKIGVLTNLR 197

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            +H             + +       ++  A     D  + +     +       +V   
Sbjct: 198 PEH-LCEFGGSMEKYVERKACILPASQKLIANSQCGDLLTYKREDTVYFNFENDEAVNLD 256

Query: 274 GKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                              ++ +   + +        +   N   A  +    GI    +
Sbjct: 257 KYTPTYYGFYDDGKYNIRIVNNKETTESEIEIDTIAFYTYENLTAAIAVSREYGISLNDI 316

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + +     V GR E++G    G   Y D ++   S+   L++++      +I+++    
Sbjct: 317 KKGIGMFTGVGGRMEYLG-KFNGVDAYYDASYGDQSVRQALESVKD---ENLIILYDNVD 372

Query: 393 DRDQGKRPIMGKIALDLADIAIVTD----DNPRSEDPE-KIRAEIIHGIPGFIEKGNRIE 447
                 +   G++  D A+I I T      N    D    +   I +     I      E
Sbjct: 373 STTIRDKAESGRVIGDYANIVIATGYVEITNTLDMDAALDLLNAIENDDVLKIALCTLDE 432

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A   A++     D++V  G
Sbjct: 433 AAELAMKYAKPGDIIVHLG 451


>gi|326564735|gb|EGE14948.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 12P80B1]
          Length = 460

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 107/360 (29%), Gaps = 28/360 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++  + +  I Q SG+ +        +     D+R      + LA 
Sbjct: 101 KDRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGF--LIGGVPLVNTDDRR-----LSLAF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAK 230
             S    +    +  +         R   +     +    NL  DH D      A     
Sbjct: 154 QHSSYLGKQFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQF 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +   +  K    I     +    + K       R    G       L           
Sbjct: 214 HHMIRMIPSKGQIIIPANTPSLETTLDKGVWTTVVRTSLNGDAEWQAKLDANDGSSFW-- 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +          + + G   V NAL A      +G+   +    L     +  R E +G
Sbjct: 272 --VHHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIAL 407
            +     ++ D+AH   ++   L    + +T  RI  +     +  +    RP +   A 
Sbjct: 330 -DVDDILVFDDFAHHPTAISTTLDGAKKRLTPRRIWAIIEPRSNTMKLGSHRPHLAASAA 388

Query: 408 DLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +AD  I         +P+ +     E I   P      +    I          D +++
Sbjct: 389 -IADQVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIII 440


>gi|166365245|ref|YP_001657518.1| UDP-N-acetylmuramate--L-alanine ligase [Microcystis aeruginosa
           NIES-843]
 gi|189029000|sp|B0JHH4|MURC_MICAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166087618|dbj|BAG02326.1| UDP-N-acetylmuramate-alanine ligase [Microcystis aeruginosa
           NIES-843]
          Length = 478

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 126/418 (30%), Gaps = 53/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNT--PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +       +   PI    +    L   A         + +AV GT GK++
Sbjct: 86  VICSTAINDHNKEYQAARDLGYPIFHRSDVLAAL--IADY-------DSIAVAGTHGKTT 136

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL                D  +     +   +  + L          +
Sbjct: 137 TSSLIGYVLLEAGL----------------DPTIIVGGEVDAWEGNARLGQGRFLVAEAD 180

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++Q      +       +     +      
Sbjct: 181 ESDGSLTKH-----APKIGVITNIELDHPDHYQNLSEVIDTFHEFAHQCQILVACL---- 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  + +         L       +   + +      +                +PG
Sbjct: 232 ---DCDTIAEHFRPTISYSLDPEKGADYTVSEIIYEQGMMKASVWEKGSYLGQMEVKIPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL    +   +G++ A++ + +        RFE     + G     DYAH  + 
Sbjct: 289 QHNISNALAVVAIGRYLGLEFAVIADAIATFAGAKRRFE-HKGEANGITFIDDYAHHPSE 347

Query: 369 LEMILKNIRTITSG----RIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           L   L   +    G    R I +F      R        G  A   AD+ ++TD     E
Sbjct: 348 LLATLAAAKLKVEGKQYQRSIAIFQPHRYSRTTAFLEEFGS-AFSSADVVVLTDIYSAGE 406

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                   +++  ++                 +  +E+L   D+ +  G G+    ++
Sbjct: 407 VNINHVTGQQVAEQVRKHHKNAYYHPELSSLGQFLLEILQPGDLALFLGAGNLN-QVI 463


>gi|149275988|ref|ZP_01882133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter sp.
           BAL39]
 gi|149233416|gb|EDM38790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter sp.
           BAL39]
          Length = 447

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 125/363 (34%), Gaps = 40/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R         + +TG++GK++ +     I + +GL+    G               
Sbjct: 96  EFAKRYTH---AKTICITGSNGKTTTSLLTYHILKHAGLNVGLAGNIG------------ 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                      + +++       +E SS  LD   +   +       N+  DH+D +  +
Sbjct: 141 -------NSFAAQVATAEYDWYVLEISSFMLDD--MYDFRADVAVLLNITPDHLDRYDYK 191

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A      +   ++   I  ADD  + + MK+      R+     +        + 
Sbjct: 192 LGNYAASKMRIAQNQSEDDSFIYCADDEETLKAMKQQKVES-RMYPFSIRKHIEQGAYLE 250

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           + +    + ++ +         L G+  +YN++ +  +   + I +A + E +     V 
Sbjct: 251 SNNIHININLNDQLTMSITDLALQGKHNIYNSMASGIVAKVLDIRNATIRESMGDFKNVE 310

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   S    I    A   NS    L+++ T        V    G  D+G    M 
Sbjct: 311 HRLEHVAKISGVEYINDSKATNVNSTWYALESVNTD-------VILIMGGVDKGNDYEML 363

Query: 404 KIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           K  +     AIV    DN R      I       +   +   +  EA++ A  +  K + 
Sbjct: 364 KDMVRQKVRAIVCLGKDNKR------IHEAFEDDVEVIVNTFSAHEAVQVAYHLAKKGNT 417

Query: 462 LVV 464
           +++
Sbjct: 418 VLL 420


>gi|169831595|ref|YP_001717577.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638439|gb|ACA59945.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 449

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 92/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R    +       NL  DH+D H T +AY  AK  +F      +   + +
Sbjct: 159 EVSSFQLETTR--DFRPRVAVILNLTSDHLDRHGTMEAYIEAKAAIFANQQASDWTVLNF 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++ +  R               + + ++    +        +V          +P
Sbjct: 217 -DDPRTRALASRTRAEVIFFSRQHKLEQGVFIQDGQIMARAGGKEAAVCPVR---TLSIP 272

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A      +GI  + +   L     VP R E VG       +    A   +
Sbjct: 273 GAHNVENALAATAAGWVLGIGPSALGRALTSFQGVPHRLETVGWVGGVEYVNDSKATNPD 332

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPE 426
           +    L           +V+   G ++       M K    +  + I+       E   E
Sbjct: 333 AAIRALDAYAG-----PVVLIAGGRNKGNDFTAFMEKAREKVRVLVII------GECAAE 381

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              A    G+   +   +   A++ A +     +V+++
Sbjct: 382 MAAAAARAGLGEVLRAKDLPGAVQLARDAARPGEVVLL 419


>gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 773

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 16/291 (5%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
             A    +   +I   +  L+V N  K L   A          ++ +TG++GK+ V  ++
Sbjct: 15  DGAQPTPNSRLSILDFSNFLIVANPLKALQKLAEAHRENFKIPVIGITGSNGKTIVKEWL 74

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            Q+                 S  + ++++  P  +             +       S  G
Sbjct: 75  HQLLSPDRCIV--------RSPRSYNSQIGVPLSV-----WQLNEEAELGIFEAGISEMG 121

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   IK   G  TN+G  H +   + Q     K+ LF+     +       ++  S
Sbjct: 122 EMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFK---DCDVVIYNGDNELIS 178

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             V K    A     S     + +++ KV    +   +       D  F  P   +  + 
Sbjct: 179 NCVAKSMLTAREIAWSCKDIERPLYISKVTKKEDHTVIAYRYLDMDNIFCIPFIDDASIE 238

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           NAL     C+ +   +  + E + +L  +  R E     +    I   Y  
Sbjct: 239 NALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCILINDSYNS 289


>gi|255020014|ref|ZP_05292087.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
 gi|254970543|gb|EET28032.1| UDP-N-acetylmuramate--alanine ligase [Acidithiobacillus caldus ATCC
           51756]
          Length = 465

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 130/390 (33%), Gaps = 51/390 (13%)

Query: 51  GNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLF 105
           G +   GH     A  +GA+ +V+SSA    +    A      P++     R+   L+  
Sbjct: 50  GARIFSGH---EAANVRGADVVVISSAVPESNPEVQAAREQRIPVI-----RRAEMLAEL 101

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
                G      +AV GT GK++  S V  I   +    +F IG    + S   + RL  
Sbjct: 102 MRFRQG------IAVAGTHGKTTTTSLVASILAAADLDPTFVIG--GLLKSAGTNARLGD 153

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              +      S  S                       +  +    TN+  DH+D +    
Sbjct: 154 GEYLVAEADESDASFLY--------------------LAPVMAVVTNIDADHMDTYGGSL 193

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                    F + LP    A++  DD   + ++    +                      
Sbjct: 194 EELRRAFLQFLQRLPFYGLAVLCTDDPLVRGLIPELRSPVLGYGFSASADLQARHWHQVG 253

Query: 285 IHNKQQVTISVEGKDFDF---LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
             ++ +V   V+G+   +      +PG   V NAL A G+   +G+ +  +   L     
Sbjct: 254 GRSRFEVWRRVDGEAVHWLDAELAIPGRHNVLNALAAIGIASKVGVRAETIQAALADFRG 313

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  RFE +G +  G  I  DY H    LE  L   R +   R I V      R    R +
Sbjct: 314 VGRRFEILG-DFAGITIVDDYGHHPRELEATLAAARDMWPDRPI-VLAFQPHRFSRTRDL 371

Query: 402 MGKIALDL--ADIAIVTDDNPRSEDPEKIR 429
                  L  AD +++ D     E    I 
Sbjct: 372 FADFVEVLGKADRSVLLDIYGAGE--AAIA 399


>gi|50121978|ref|YP_051145.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Pectobacterium atrosepticum SCRI1043]
 gi|49612504|emb|CAG75954.1| bifunctional protein [includes: folylpolyglutamate synthase and
           dihydrofolate synthase] [Pectobacterium atrosepticum
           SCRI1043]
          Length = 422

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 54/392 (13%), Positives = 104/392 (26%), Gaps = 42/392 (10%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V    + L L       +    I  V GT+GK +    ++ I   +GL          +
Sbjct: 34  RVKQVAEHLQLL------QPAATIFTVAGTNGKGTTCCTLESILLAAGLRVGVYSSPHLV 87

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +           L+ A    +   +       S    +   L  ++L   +  ++ 
Sbjct: 88  RYTERVRIQGH----ELSDAQHTQAFADIEAGRGAVSLTYFEFGTLSALQLFKQANLDVV 143

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +       A       +               +D  S    K       R   VG  
Sbjct: 144 ILEVGLGGRLDATNIVDADVSVVTSIAIDHTDWLGNDRESIGREKAGIFRQGRPAVVGEP 203

Query: 274 GKFIHLKKVCA-----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +  V A                    +   +D            V     A  L 
Sbjct: 204 DMPGTIADVAAEKGALLRRRGRDWEFSVQRETWSWQDKQRELSRLPLPNVPLPNAATALA 263

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
                   +  E + +                  R+ +D AH  ++   +   +  +   
Sbjct: 264 ALHYSSLNVSEEAIRQGLQRAALPGRFQIVQESPRLILDVAHNPHAAAYLANRLAGLPKA 323

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIH 434
           G++  V G   D+D         IA  LA +  + D+        PR         +I  
Sbjct: 324 GKMRAVVGMLSDKD---------IAGTLAHLIPLIDEWYCASLEGPRG----ATAQQIAE 370

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +       + + A + A+    +QD+++V G
Sbjct: 371 HLTRSQSFPDVVTAWQQAMSDATEQDIVIVCG 402


>gi|139437196|ref|ZP_01771356.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC
           25986]
 gi|133776843|gb|EBA40663.1| Hypothetical protein COLAER_00335 [Collinsella aerofaciens ATCC
           25986]
          Length = 472

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 129/412 (31%), Gaps = 48/412 (11%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +VVS+A    +           P+         L          H    +AV GT GK+
Sbjct: 77  VVVVSTAIPESNPELVRARELGIPVWPRAKMLSALG---------HGYTTVAVAGTHGKT 127

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +S    +  R G   SF IG    +  +  + +  +          S  S        
Sbjct: 128 TTSSMCATMLDRMGLDPSFLIG--GIVEGYDTNGKNGSGDYFVAEADESDSSFLF----- 180

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  DH+D++   +    A    F  L+ ++   I+
Sbjct: 181 ---------------LNPNVVIVTNVEADHLDHYSGIEEIE-ATFAKFMSLVGEDGTVIV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +D +  E+ K                       V  I +   V      +    +   
Sbjct: 225 CGEDPHLVELAKSTGRHVLSYGFAESNDIVCMHPDVKGIQSDFIVRFEDGTEHAVEIKSN 284

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NA     +   +G D     + L     V  RF  VG    G  +  DY H  
Sbjct: 285 PGRHNMLNATAVLTVAHVLGFDIDSAAKALSSFEGVRRRFTHVGDID-GITVVDDYGHHP 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED 424
             ++  L    ++    + VVF     R    + +    A     AD  ++ D     E 
Sbjct: 344 TEIKATLAAASSLGYKHVDVVF--QPHRYSRLQALCDDFADAFANADKLLLIDVFSAGEM 401

Query: 425 P------EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P      + +   +    PG   +   +R+E  +   +M+ + D+L+  G G
Sbjct: 402 PIPGVTSKMLADTVRAKHPGKEVVYCSSRLELNQELEQMVGEGDLLLTMGAG 453


>gi|313903440|ref|ZP_07836831.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466261|gb|EFR61784.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 549

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 112/382 (29%), Gaps = 59/382 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQ--------RSGLSSFQIGPTSTISSFAQDN 160
              +    +L VTG++GK++  + + +  +         +G   F  G          D 
Sbjct: 173 FLERCRGKVLGVTGSAGKTTTTTLLAEGLRQAAAPGGPLAGRPVFVGGNIGRPLIEEVD- 231

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
               P  + +                +E SS  L+   L         + NL  +H+D H
Sbjct: 232 -RIPPEALVV----------------LELSSFQLE---LCHRAPDVAVYLNLRPNHLDIH 271

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T +AY  AK R+ E   P    A++ AD+     +  RA        +     + +  +
Sbjct: 272 GTMEAYAAAKARIVELQEPDGW-AVLNADEPAPAGLAGRAPGRVAAFAASARAARELAER 330

Query: 281 KVCAIHNKQQVTISVEGKDFDFL------------FPLPGEFQVYNALVAAGLCIAIGID 328
           +        +       +   +               L G     NAL A       G D
Sbjct: 331 EAARRGGPVRAAYLAGDRLVAWDGQGERPLLEAGAMHLRGAHNRLNALAAILAGWVAGAD 390

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
            A + +       V  R E V             A   +     L+          +V+ 
Sbjct: 391 PAGMAQAAAAFRGVEHRLEPVRELDGVWYYNDSIATAPDRTLAALEAFTE-----PVVLI 445

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG------FIEK 442
             G D+     P+ G      A   ++          E I+  I                
Sbjct: 446 AGGYDKGIPFDPL-GPALCRRARAVVL-----LGRTAEAIQRVIEEAARQEGKAPLVRRV 499

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +  EA+  A  +    DV+++
Sbjct: 500 ASLEEAVAEARRLARPGDVVLL 521


>gi|315646029|ref|ZP_07899150.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
 gi|315278790|gb|EFU42104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
          Length = 479

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 135/455 (29%), Gaps = 87/455 (19%)

Query: 65  AQGAEAIVVSSAYSLQ------------------DFSATIRSNTPILV--------VDNT 98
             GA  IV       Q                       I     +LV        V   
Sbjct: 30  QAGASVIVNDRKEREQCPEASELEALGISVICGGHPDDLIDPGVALLVKNPGIPYSVPPV 89

Query: 99  RKFLS---------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
           RK L            A  L       I+ +TG++GK++  ++V ++ + +GLS    G 
Sbjct: 90  RKALELEIPIVTEVEVAYHLCEAP---IIGITGSNGKTTTTTWVGKLLESAGLSPIVAGN 146

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-----QHRLDGIKL 204
                         TP         +   +     + VE SS  L      + R+  +  
Sbjct: 147 IG------------TPLS------EAAAEATPDNWMVVELSSFQLKGTEEFRPRIACLLN 188

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
           IA +  +      DY  ++   F  +      +L  + P            ++  +    
Sbjct: 189 IAETHLDYHGGMDDYISSKARLFVNQTADDTAVLNWDDPVCRNLVPYIKARIIPFSMTES 248

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-------FPLPGEFQVYNALV 317
            R             +           TI     +             LPG F V NAL 
Sbjct: 249 LREGVYLSTPYAPGSQDSDEDEGDVGRTIIYTDGEGFTHEIIRVENIGLPGRFNVDNALA 308

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A  + IA G+    +   L     V  R EFV             A  S +  M L + +
Sbjct: 309 ACAIAIAAGVAPDQLEGALSSFRSVEHRLEFVAELQGISYYNNSKATNSKATNMALTSFK 368

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGI 436
                  I++   G DR      ++  +   +  + ++       E  EKI  A    G+
Sbjct: 369 E-----PIILIAGGLDRGSDYEDLIPSMQGRVKAVVLI------GETKEKIANAAAKAGL 417

Query: 437 PGFIEKGNRIEA-------IRTAIEMLNKQDVLVV 464
              I   N  +A       +R A E+    D++++
Sbjct: 418 KDIILVDNGKDAAATLTSAVRKASELAESGDIVLL 452


>gi|254238926|ref|ZP_04932249.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126170857|gb|EAZ56368.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
          Length = 480

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 57/438 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IF+       DG              +VVSSA +  +          I VV    + L+ 
Sbjct: 63  IFIGHQAENADGAD-----------VLVVSSAINRANPEVASALERRIPVVPRA-EMLAE 110

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLT 163
                +G      +AV GT GK++  S +  +    G   +F IG    +++   + +L 
Sbjct: 111 LMRYRHG------IAVAGTHGKTTTTSLISSVFAAGGLDPTFVIG--GRLNAAGTNAQLG 162

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                   +AS   L          +    TN+  DH+  +   
Sbjct: 163 ------------ASRYLVAEADESDASFLHLQ--------PMVAVVTNIDADHMATYGGD 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                     F   LP    A++  DD   +E++ +          +        +    
Sbjct: 203 FNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPTV-TYGLSEDADVRAINIRQ 261

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +  E +  D    +PG   V N+L    +    GI    +++ L     V 
Sbjct: 262 EGMRTWFTVLRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVG 321

Query: 344 GRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGK 398
            RF+  G          +  DY H    +  ++K IR     R +V+        R +  
Sbjct: 322 RRFQVYGELQVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDL 381

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH--GIPGFIEKGNRIEAIR 450
                ++  + A++ ++ +  P  E+P       ++   I     +     + +   A  
Sbjct: 382 YEDFVQVLGE-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLA-P 439

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 440 LVKPLLRAGDILLCQGAG 457


>gi|91786974|ref|YP_547926.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
 gi|122968125|sp|Q12EL4|MURC_POLSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91696199|gb|ABE43028.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas sp. JS666]
          Length = 467

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 81/431 (18%), Positives = 138/431 (32%), Gaps = 54/431 (12%)

Query: 59  FIPQAIAQGAE--AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A +  A+  A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAASNLAKVDAVVTSTAVQADNPEVLAAREKRIPVVPRAL-MLAELMRLKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ GT GK++  S V  +   +G   +F IG    ++S   + RL     I +    S
Sbjct: 108 -IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIG--GRLNSAGANARLGLGDYIVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH++ +    A        F 
Sbjct: 165 DASFLN--------------------LLPVMAVVTNIDADHMETYGHDFANLKKAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI+  DD   +E++ +                 +    V  +  +   T   
Sbjct: 205 HRMPFYGTAILCTDDPAVREIVPQVSCPITSYGFGE--DAQVRAVNVRPVGAQMHFTAQR 262

Query: 296 EGK----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  D + +  L GE  V NAL A  + + + +    V + L +   V  RF+  G 
Sbjct: 263 RNGVTLPDLEVVLNLAGEHNVLNALSAIAVAVELNVPDTAVQKALAEFKGVGRRFQSYGD 322

Query: 352 NSR----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR---PIMGK 404
                     +  DY H    +   L   R    GR  +V      R    R       K
Sbjct: 323 VPAKGGGHFTVIEDYGHHPVEVAATLAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVK 381

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLN 457
           +    AD  ++ +     E P        +   +           + I+A+  AI +   
Sbjct: 382 VIGQ-ADAVLLAEVYAAGETPIVAADGRSLARALRVAGKLEPVFVSEIDAMPQAILDNAL 440

Query: 458 KQDVLVVAGKG 468
             DV++  G G
Sbjct: 441 GGDVVMCMGAG 451


>gi|300717683|ref|YP_003742486.1| FolC bifunctional protein [Erwinia billingiae Eb661]
 gi|299063519|emb|CAX60639.1| FolC bifunctional protein [Erwinia billingiae Eb661]
          Length = 420

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 16/166 (9%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLP       A   A L  +       ++       ++PGRF+ V  + R   + +D AH
Sbjct: 247 PLPQVPMPNAATALAALRCSSLQVDDAIIYQWLDKAILPGRFQTVAESPR---VILDVAH 303

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD-DNP 420
             ++   +   +  +   G++  V G   D+D       G +A      D       D P
Sbjct: 304 NPHAASYLAGRLSELPKSGKVHAVVGMLHDKDIA-----GTLACLQPEVDYWYCAPLDGP 358

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R         ++   +P      +  +A R A++    QD+++V G
Sbjct: 359 RG----ASAEQLKAHLPTAQTFTSVADAYRQALQQAEAQDIVLVCG 400


>gi|291532687|emb|CBL05800.1| Folylpolyglutamate synthase [Megamonas hypermegale ART12/1]
          Length = 204

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 13/174 (7%)

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK----LHVVPGRFEFVGTNSR 354
           +F++   L G+ Q+ N+ +A      +G +   +          L   P RFE    N  
Sbjct: 22  NFNYKLKLLGDHQIENSSLAIMTASILGNNDERITRENIIDGLALAKWPARFEV--FNFD 79

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
           G    VD AH    + ++ +N+       + +++ G   D+D      M    L   D  
Sbjct: 80  GQICIVDGAHNPAGMMILRQNLDKYYPNEKRVILLGILKDKDID---TMLIDLLRDDDEI 136

Query: 414 IVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++T  N  R   PE I ++I +         N  EA+  A +   K  VL + G
Sbjct: 137 VITTPNSERKASPEYIASKISNH--RVETFNNMQEALTLARQWAGKDKVLCITG 188


>gi|290961154|ref|YP_003492336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptomyces
           scabiei 87.22]
 gi|260650680|emb|CBG73796.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Streptomyces scabiei 87.22]
          Length = 473

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 115/379 (30%), Gaps = 53/379 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I   +GL +  +G               
Sbjct: 100 ELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILTAAGLRTAAVGNIGVSLLDVVLG--- 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                           +    ++VE SS+ L       ++  + +  NL  DH+D+H + 
Sbjct: 157 ---------------DEPYDVLAVELSSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSM 199

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +    A       +      A +Y  DA  K   +               G  +      
Sbjct: 200 E----AYAADKGRVYEGNRVACVYNVDATDKPSTEDLVREADVEEGCRAVGFTLGTPGPS 255

Query: 284 AIHNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVL 333
            +     + +     +                 P    + NAL AA L  A G+ +A V 
Sbjct: 256 QLGVVDGILVDRAFVENRQKNAQELAEVADVNPPAPHNIANALAAAALARAYGVPAAAVR 315

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L        R   V        I    A  +++ +  L    +      IV    G  
Sbjct: 316 DGLRAFTPDAHRIAHVADVDGVAYIDDSKATNTHAAQASLAAYES------IVWIAGGLA 369

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIE----- 447
           +      ++   A  L    ++        D   IR  +    P       +R +     
Sbjct: 370 KGATFDELVAGAAGRLRGAVLI------GADRALIREALARHAPEVPVVDLDRTDTGAMP 423

Query: 448 -AIRTAIEMLNKQDVLVVA 465
            A+R A  +    D +++A
Sbjct: 424 AAVREARTLARAGDTVLLA 442


>gi|212702358|ref|ZP_03310486.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
 gi|212674236|gb|EEB34719.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
          Length = 457

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 141/423 (33%), Gaps = 47/423 (11%)

Query: 56  GHLFIPQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A    G   ++V S    +D    + +    + +    + L+       G   
Sbjct: 56  GH-----AAENVGNVQVLVKSTAIAEDNPEVVEARRRNIAIIPRAEMLAELMRLRQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++  S    I   +GL    I     ++ +  +  L +         +
Sbjct: 108 ---VAIAGTHGKTTTTSLTASIFDTAGLDPTVI-IGGRLNVYGTNAHLGSG-----HYLI 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +       + + +                 I    TN+  DH+D++ T+QA  +A ++  
Sbjct: 159 AEADESDGSFLCLF---------------PIINVVTNVDEDHLDHYGTRQAIDDAFVQFM 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            ++       +   DD   + ++ R                 +    + +    +     
Sbjct: 204 NKVPFYGLNVV-CGDDPGVRALLPRVKRPVLTYGF--AADNQLRAVLLESGMTSRFEVWR 260

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + K  +   P PG   + NAL A G   A  I     +E L     V  RFEF G    
Sbjct: 261 DDQKLGEVTLPHPGRHNILNALAAIGAATAADIPFERCVEGLATFRGVGRRFEFKG-ERN 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
           G  +  DY H    +   L   R +   R +VV      R    +   G+        D 
Sbjct: 320 GVTVIDDYGHHPAEIAATLATARQVFPNRRLVV-AFQPHRFSRTQAHFGEFCKVFDVVDQ 378

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVA 465
            ++T+    SE P      E +   +       +     I+A+   + ++L   DVL+  
Sbjct: 379 LVLTEIYAASEKPIPGVSGESLAQGMRQVSETPVTYFQTIDAMVKGLDDILKPGDVLLTL 438

Query: 466 GKG 468
           G G
Sbjct: 439 GAG 441


>gi|188535054|ref|YP_001908851.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia tasmaniensis Et1/99]
 gi|188030096|emb|CAO97982.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia tasmaniensis Et1/99]
          Length = 450

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 103/360 (28%), Gaps = 38/360 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++AV GT GK++ A  V  I Q  G    F IG        +     +    I   +
Sbjct: 102 DHWVIAVAGTHGKTTTAGMVAWILQACGYEPGFVIGGVPGNFDVSAKLGKSPFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D ++  +A       
Sbjct: 162 YDCAFFDKRAKFV---------------HYCPRTLILNNLEFDHADIYEDLRAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+    GC               K  +        
Sbjct: 202 KQFHHLVRIVPGQGKIILPEHDANLKQVMAMGCWSEQEAVGENGCWQVKKLSPDASHWEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                +  +  + L GE  + N ++A      +G+        L        R E  G  
Sbjct: 262 WLDGERVAEVNWSLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC------GGDRDQGKRPIMGK 404
           S G ++Y D+AH   ++   L  +R    G  RI+ V          G       P +G+
Sbjct: 321 SNGIKVYDDFAHHPTAINATLAALRGKVGGTARILAVLEPRSNTMKMGISKNDLAPSLGR 380

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                AD   +   +       ++    I       +    +EAI     + +  D ++V
Sbjct: 381 -----ADEVFLYQPHHIPWQVSEVADACIQPAHWSADIDTLVEAIAK---IAHPGDTILV 432


>gi|1841788|gb|AAB47522.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus elongatus PCC
           7942]
          Length = 280

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 20/201 (9%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             PL     + NAL A   C  +G+D A + E L        RFEF G +++G +   DY
Sbjct: 80  HLPLMEAHNLSNALAAIAACRHLGMDFASIREGLAGFEGARRRFEFRG-SAQGIQFVDDY 138

Query: 363 AHTSNSLEMILKN--------IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADI 412
           AH  + L   L             +      +V      R    +  + + A     AD+
Sbjct: 139 AHHPSELAATLAAARLQIDSGCSRLPEVPKRLVAIFQPHRYSRTQAFLAEFAQSFGPADL 198

Query: 413 AIVTDD------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVA 465
            +++D       NP     + +   I           +  EA+     ++L   D+ +  
Sbjct: 199 VLISDIYAAGERNPGQLSGQTLADAIAQYQANVHYAPDL-EAVEQRLHQLLQPGDLALFL 257

Query: 466 GKGHETVHIVTNGEKKMSVDC 486
           G G+    ++       + D 
Sbjct: 258 GAGNLN-QVIPRLLDHYACDR 277


>gi|212635889|ref|YP_002312414.1| folylpolyglutamate synthetase [Shewanella piezotolerans WP3]
 gi|212557373|gb|ACJ29827.1| Folylpolyglutamate synthetase [Shewanella piezotolerans WP3]
          Length = 426

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 112/368 (30%), Gaps = 30/368 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT----------P 165
            ++ V GT+GK +  + ++   + +G S         +    +                 
Sbjct: 54  KVVTVAGTNGKGTTCAMIEAALKLTGRSVGVYSSPHLLKYNERVRINGVDATDAALVSAF 113

Query: 166 SPIYLAKALSYLSSQGVTHVSVEAS--SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             I  A+A   LS      ++         LD   L+         TN+    I    + 
Sbjct: 114 EAIEAARAEISLSFFEYATLAGLVLFKREQLDVILLEVGLGGRLDATNIIDADISVVTSI 173

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                  +    EL+  E   I  A       ++         +      G  ++     
Sbjct: 174 DLDHQEYLGDTRELVAAEKAGIFRAGRPA---IVGEPDCPQPLIDYAHSIGANLYRVGQE 230

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV- 342
             +     + +  G+ FD       +    NA  A  +   +  +    L      +   
Sbjct: 231 FNYTCSNTSWNYHGQSFDLDPLPLPKLPQPNAATAIAVLEHLCPNIDSNLLADVVGNTQL 290

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E +        + VD AH  ++   +   +  +   R+  + G   D+D       
Sbjct: 291 AGRLEQL---CDKPCVIVDVAHNPHAARYLKSRLSKLNKARLFAICGMLKDKDA------ 341

Query: 403 GKIALDLADIA---IVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             + ++L+       +TD D PR  + E     ++    G     N   A   A +  N 
Sbjct: 342 AAVLVELSIDVTHWYLTDLDVPRGTNAES-LKALLPPQSGASCFNNIESAWNAAQQQANA 400

Query: 459 QDVLVVAG 466
            DV++V G
Sbjct: 401 DDVIIVFG 408


>gi|297569450|ref|YP_003690794.1| UDP-N-acetylmuramate/alanine ligase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925365|gb|ADH86175.1| UDP-N-acetylmuramate/alanine ligase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 490

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 145/421 (34%), Gaps = 31/421 (7%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +V+SSA    D      ++  ++ V    + L+            N +AV G+ GK
Sbjct: 64  GADVVVISSAVK-PDNPEVTAAHEALIPVIPRAEMLAELMRL-----KINGIAVAGSHGK 117

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S    +   +GL    +     ++SF  + +L     +      S  S   ++ V 
Sbjct: 118 TSTTSMAGTLLAEAGLDPTVV-IGGQVNSFGSNAKLGEGDFLVAEADESDGSFLKLSPVL 176

Query: 187 VEASSHGL----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
              ++  L      H L+ +K     F N    +            A   L        +
Sbjct: 177 EIVTNIDLEHVDHYHDLEAVKAAFLEFINRIPFYGAAILCLDDPNVA-ALLPLVRKRTIT 235

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG--KDF 300
             +    D  ++E+  R   +   V   G +    + K     +   Q  +S E   K  
Sbjct: 236 YGLSSQADVQAREITSRGFVSRFEVWQRGREQATNNGKNCAQDNGMAQDAVSREPLRKLG 295

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   +YNAL    L + + I   ++   L     V  R E  G    G  +  
Sbjct: 296 SVALAVPGRHNIYNALAVIALGLELEIPFPVIARALSTYSGVQRRLEVKG-EVDGITVVD 354

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDD 418
           DY H    +   L  +R     R +VV        R  G  P     A   AD+ ++ D 
Sbjct: 355 DYGHHPTEIRATLAAMRQAWPKRRLVVLFQPHRYSRTAGLLPDFC-TAFHDADLLLLDDI 413

Query: 419 NPRSEDP------EKIRAEIIHGIPGFIEKG----NRIEAIRTAIEMLNKQDVLVVAGKG 468
               E+P      + +   I       +E      +  EA+   + +L + DV++  G G
Sbjct: 414 YAAGEEPVAALAGDALARAIRRHGQKEVEYVSGLIDNPEAV---LPVLKRGDVVLTLGAG 470

Query: 469 H 469
           +
Sbjct: 471 N 471


>gi|158522799|ref|YP_001530669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
 gi|226711907|sp|A8ZXW5|MURD_DESOH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158511625|gb|ABW68592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
          Length = 459

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 71/402 (17%), Positives = 130/402 (32%), Gaps = 54/402 (13%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSL--FASRLYGKHPENILAVTGT 123
           A+ IVVS                  P+         +     A+R   K    + AVTGT
Sbjct: 72  ADYIVVSPGVPETLAPLKKAAEKGIPV---------MGEMELAARFVTKP---VAAVTGT 119

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++V + +  + + SG   F  G          D        +               
Sbjct: 120 NGKTTVTTLLGDMLKASGRQVFVGGNIGAPLIGFADKGENADMAV--------------- 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              VE SS  LD       +       N+  DH+  +    AY  +K R+FE     +  
Sbjct: 165 ---VEVSSFQLDTSETF--RPHVAVLLNIAEDHLARYVDFNAYVRSKGRIFENQEADDVA 219

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I  AD      V++ +     R L+            +     +     +         
Sbjct: 220 VINGAD----FHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIVTAGTKTATISVTS 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +     + N   A    +A+G     +   ++    +  R E+V +           A
Sbjct: 276 PLMRARHNMENIAAATLAALAMGATVEGIQAAVDGFQGLRHRLEYVASIDDVHYFDDSKA 335

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRS 422
              +++   L       + R++++    G  D+G    + K +  + A   ++       
Sbjct: 336 TNPDAVRRAL----EFFTSRVVLLL---GGEDKGCDYGVLKNVIRERARAVVL-----FG 383

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              EKIR  I +G     + G+  EA+R A E+    D +++
Sbjct: 384 AAKEKIRMAI-NGSVSLWDAGSMAEAVRRAHELAAPGDAVLL 424


>gi|153815035|ref|ZP_01967703.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
 gi|145847603|gb|EDK24521.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 82/275 (29%), Gaps = 10/275 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH+D+ +  +   ++    F ELLP++   II A+     E+ +  
Sbjct: 176 HFFPKISVILNIEEDHLDFFKDLEDIRHS-FHQFAELLPEDGTLIINAEIKDYAEIYEGL 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   + G               +                  + G+  V NAL A  
Sbjct: 235 SCNVVTYGTNGCFDYSAKNITYDENGHVAFDLFRRGEYADHIQLSVTGDHNVSNALSAIA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G+   +    L        RFE+ G    G  +  DYAH    +   LK  +   
Sbjct: 295 VADILGLSIDITKRGLLSFTGTDRRFEYKG-EFNGVTVIDDYAHHPTEILATLKAAQHSL 353

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
              +  VF      R +       + AL  AD  ++ D     E          +  E  
Sbjct: 354 HNSVWCVFQPHTYTRTKAFFHEFAE-ALSHADHLVLADIFAARETDTLGISSADLAKETE 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +  +      E     D+L+  G G
Sbjct: 413 KLGTDTHYFPSFAQIEAFLKENCRPGDLLITMGAG 447


>gi|300715069|ref|YP_003739872.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia billingiae Eb661]
 gi|299060905|emb|CAX58012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia billingiae Eb661]
          Length = 451

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 100/360 (27%), Gaps = 38/360 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++AV GT GK++ A     I Q  G    F IG        +     +    I   +
Sbjct: 102 DRWVIAVAGTHGKTTTAGMAAWILQACGLEPGFVIGGVPGNFDVSATLGKSPFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D     +A       
Sbjct: 162 YDCAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+    GC               K       +   
Sbjct: 202 RQFHHLVRIVPGQGKILMPDHDVNIKQVMAMGCWSEQETVGDSGHWQAKKLTPDASRWEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                +  +  + L GE  ++N ++A      +GI        L        R E  G  
Sbjct: 262 WLDGERVAEVNWALVGEHNMHNGMMAIAAARHVGIKPEDAGLALNDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------K 404
           + G ++Y D+AH   ++   +  +R+   G  RI+ V        +     MG       
Sbjct: 321 ANGVKVYDDFAHHPTAILATMTALRSKVGGTARILAVLEP-----RSNTMKMGISKDDLA 375

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AL  AD   +   +     P ++               +    +   +++    D ++V
Sbjct: 376 PALARADEVFLLQPHH---IPWQVSEVAEACSQPAHWSPDVDVLVEMIVKVAQPGDTILV 432


>gi|71735898|ref|YP_276229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|109892721|sp|Q48EF9|MURC_PSE14 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71556451|gb|AAZ35662.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322449|gb|EFW78542.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330082|gb|EFW86069.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874984|gb|EGH09133.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 486

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 135/422 (31%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 226 MCIDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVSAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|229062151|ref|ZP_04199475.1| Folyl-polyglutamate synthetase [Bacillus cereus AH603]
 gi|228717134|gb|EEL68810.1| Folyl-polyglutamate synthetase [Bacillus cereus AH603]
          Length = 433

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 91/309 (29%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAIYYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           ++V K  H +   +            K 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVKNEEALQVIQKVAKENHASLYELGKQFTTLHKHSNKD 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                           +         G   +    V         +     ++   +   
Sbjct: 239 GEHFDFDCPFASFENVRISMKGIHQVGNAALALMAVMYLKTYLSFLIDEEEIKVGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKKKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   +  EAI T ++M+ 
Sbjct: 354 -MVGQLEKVADEIIFTT----FAFDRAISADKLASYSQQESKLVFEDWKEAIDTKVDMIG 408

Query: 458 KQDVLVVAG 466
           + DVL++ G
Sbjct: 409 EHDVLIITG 417


>gi|257885178|ref|ZP_05664831.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
 gi|257821030|gb|EEV48164.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
          Length = 453

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 22/279 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TN+   HIDYH T++ Y  AK  L + +  K+   + 
Sbjct: 168 MELSSFQL--MGITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEKDYLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + + +R         +       ++       + K+++    E         +
Sbjct: 226 WNQSELQE-LAQRTKARVLPFSTKEVLEGGVYADDYSIYYKKEKIMEISELG-------V 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A  +    GI +  + E L   H VP R ++VG            A   
Sbjct: 278 PGKHNVENALAAISVAKLYGISNEAIRETLNLFHGVPHRTQYVGEIQGRKFYNDSKATN- 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + + +V+   G DR      ++  +    A +          +  E
Sbjct: 337 --ILATKMALSGFETSK-VVLLAGGLDRGNTFDELIPSLKGIKAMVVF-------GQTKE 386

Query: 427 KIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+       GI   +   +  +A+  A+E     DV+++
Sbjct: 387 KLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVVLL 425


>gi|237749168|ref|ZP_04579648.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes OXCC13]
 gi|229380530|gb|EEO30621.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes OXCC13]
          Length = 469

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 131/435 (30%), Gaps = 59/435 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH   P+ I   A+A+VVS+A    +          I +V   R   L+           
Sbjct: 56  GH--APENIEN-ADAVVVSTAIRDDNPEVLAARKKNIPLVP--RAVMLAELMRL------ 104

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  +A+ GT GK++  S V  +    G     +     ++S   +  L     I      
Sbjct: 105 KRGIAIAGTHGKTTTTSLVASVLAEGGFDPTFV-IGGRLNSAGANAGLGAGDFIVAEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH+D +    A        F
Sbjct: 164 SDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFVEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + LP     ++  DD    E+                        K           + 
Sbjct: 204 TQRLPFYGRVMLCIDDKNVCEIKPFISKPVTTYGFHEDADVRAIDPKAEGT-MMTFTALQ 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF-------- 346
            +          PG   V NA     +   +GI+ + +   +E+   V  RF        
Sbjct: 263 KDHPPISIRLNQPGMHNVQNACAVIAIARELGIEDSAIQRAMEQFTGVNRRFTRLGTVRL 322

Query: 347 -EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMG 403
            +  GT+     +  DY H  + +   +   R     R +V+        R +       
Sbjct: 323 PQKTGTSIAEVELVDDYGHHPSEMAATIAAARGAYPDRRLVIAFQPHRYTRTRDLFEDFV 382

Query: 404 KIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIE---AIRTAI 453
           K+    AD+ ++ +  P  E P        +   I   G    +   N  E   AI   I
Sbjct: 383 KVLS-GADVLLLGEVYPAGEQPIVAADGRTLARTIRVAGKVDPVFVENIAEMPDAILNVI 441

Query: 454 EMLNKQDVLVVAGKG 468
           E     DV++  G G
Sbjct: 442 ED---DDVVITMGAG 453


>gi|152989249|ref|YP_001350319.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|189029019|sp|A6VB84|MURC_PSEA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150964407|gb|ABR86432.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 480

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 57/438 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IF+       DG              +VVSSA +  +          I VV    + L+ 
Sbjct: 63  IFIGHQAENADGAD-----------VLVVSSAINRANPEVASALERRIPVVPRA-EMLAE 110

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLT 163
                +G      +AV GT GK++  S +  +    G   +F IG    +++   + +L 
Sbjct: 111 LMRYRHG------IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLG 162

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                   +AS   L          +    TN+  DH+  +   
Sbjct: 163 ------------ASRYLVAEADESDASFLHLQ--------PMVAVVTNIDADHMATYGGD 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                     F   LP    A++  DD   +E++ +          +        +    
Sbjct: 203 FNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPTV-TYGLSEDADVRAINIRQ 261

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +  E +  D    +PG   V N+L    +    GI    +++ L     V 
Sbjct: 262 EGMRTWFTVLRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVG 321

Query: 344 GRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGK 398
            RF+  G          +  DY H    +  ++K IR     R +V+        R +  
Sbjct: 322 RRFQVYGELQVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDL 381

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH--GIPGFIEKGNRIEAIR 450
                ++  + A++ ++ +  P  E+P       ++   I     +     + +   A  
Sbjct: 382 YEDFVQVLGE-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLA-P 439

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 440 LVKPLLRAGDILLCQGAG 457


>gi|6523805|gb|AAF14862.1|AF110740_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
 gi|12060818|gb|AAG48251.1|AF306766_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
          Length = 487

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 57/438 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IF+       DG              +VVSSA +  +          I VV    + L+ 
Sbjct: 70  IFIGHQAENADGAD-----------VLVVSSAINRANPEVASALERRIPVVPRA-EMLAE 117

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLT 163
                +G      +AV GT GK++  S +  +    G   +F IG    +++   + +L 
Sbjct: 118 LMRYRHG------IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLG 169

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                   +AS   L          +    TN+  DH+  +   
Sbjct: 170 ------------ASRYLVAEADESDASFLHLQ--------PMVAVVTNIDADHMATYGGD 209

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                     F   LP    A++  DD   +E++ +          +        +    
Sbjct: 210 FNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPTV-TYGLSEDADVRAINIRQ 268

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +  E +  D    +PG   V N+L    +    GI    +++ L     V 
Sbjct: 269 EGMRTWFTVLRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVG 328

Query: 344 GRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGK 398
            RF+  G          +  DY H    +  ++K IR     R +V+        R +  
Sbjct: 329 RRFQVYGELQVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDL 388

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH--GIPGFIEKGNRIEAIR 450
                ++  + A++ ++ +  P  E+P       ++   I     +     + +   A  
Sbjct: 389 YEDFVQVLGE-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLA-P 446

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 447 LVKPLLRAGDILLCQGAG 464


>gi|15599607|ref|NP_253101.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAO1]
 gi|116052445|ref|YP_792757.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893502|ref|YP_002442371.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|254244778|ref|ZP_04938100.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|313106941|ref|ZP_07793144.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|23821886|sp|Q9HW02|MURC_PSEAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122257549|sp|Q02H29|MURC_PSEAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711872|sp|B7UZI9|MURC_PSEA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9950643|gb|AAG07799.1|AE004856_10 UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|115587666|gb|ABJ13681.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126198156|gb|EAZ62219.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|218773730|emb|CAW29544.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|310879646|gb|EFQ38240.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 480

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 57/438 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IF+       DG              +VVSSA +  +          I VV    + L+ 
Sbjct: 63  IFIGHQAENADGAD-----------VLVVSSAINRANPEVASALERRIPVVPRA-EMLAE 110

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLT 163
                +G      +AV GT GK++  S +  +    G   +F IG    +++   + +L 
Sbjct: 111 LMRYRHG------IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLG 162

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                   +AS   L          +    TN+  DH+  +   
Sbjct: 163 ------------ASRYLVAEADESDASFLHLQ--------PMVAVVTNIDADHMATYGGD 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                     F   LP    A++  DD   +E++ +          +        +    
Sbjct: 203 FNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPTV-TYGLSEDADVRAINIRQ 261

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +  E +  D    +PG   V N+L    +    GI    +++ L     V 
Sbjct: 262 EGMRTWFTVLRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVG 321

Query: 344 GRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGK 398
            RF+  G          +  DY H    +  ++K IR     R +V+        R +  
Sbjct: 322 RRFQVYGELQVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDL 381

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH--GIPGFIEKGNRIEAIR 450
                ++  + A++ ++ +  P  E+P       ++   I     +     + +   A  
Sbjct: 382 YEDFVQVLGE-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLA-P 439

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 440 LVKPLLRAGDILLCQGAG 457


>gi|238797425|ref|ZP_04640924.1| Folylpolyglutamate synthase [Yersinia mollaretii ATCC 43969]
 gi|238718696|gb|EEQ10513.1| Folylpolyglutamate synthase [Yersinia mollaretii ATCC 43969]
          Length = 416

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 112/378 (29%), Gaps = 44/378 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  V GT+GK +    ++ I   +GL                 + L     + + 
Sbjct: 46  KPAPKVFTVAGTNGKGTTCCTLESILLAAGLRVGVYSS---------PHLLRYTERVRIQ 96

Query: 172 KALSYLSSQGVTHVSVEASSHGL-----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 +    +   +EA   G+     +   L  ++L   +  ++    +       A 
Sbjct: 97  GQELSEAEHSHSFAQIEAGREGISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDAT 156

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV---- 282
                 +                D  S    K       +   VG     + +  V    
Sbjct: 157 NIVDSDVAAITSIAIDHTDWLGFDRESIGREKAGVFRAGKPAVVGEPDMPLSIADVAAKL 216

Query: 283 --CAIHNKQQVTISVEGKDFDFLFPLPGE-------FQVYNALVAAGLCIAIGIDS-ALV 332
                   +    S + + + +                + NA  A  +     +      
Sbjct: 217 GAQLYQRDKAWQFSQQEQSWCWQCDDRQWADLPLPNVPLANAATALAVLHYSKLPLSEAA 276

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
           +    +   +PGRF+ V        + +D AH  ++   +   +  +   G++  V G  
Sbjct: 277 IHQGLQAARLPGRFQRVSEQPL---LILDVAHNPHAARYLTDRLAQLPKQGKVRAVVGML 333

Query: 392 GDRDQGKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D       G +A   +  D       + PR        A++   +    + G+   A
Sbjct: 334 SDKDIA-----GTLACLAEQVDEWYCAPLEGPRG----ATAAQLAEHLSLSRQFGDVETA 384

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++    QDV++V G
Sbjct: 385 WRQAMQDAEPQDVVIVCG 402


>gi|107100004|ref|ZP_01363922.1| hypothetical protein PaerPA_01001025 [Pseudomonas aeruginosa PACS2]
 gi|296391120|ref|ZP_06880595.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAb1]
          Length = 469

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 138/438 (31%), Gaps = 57/438 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IF+       DG              +VVSSA +  +          I VV    + L+ 
Sbjct: 52  IFIGHQAENADGAD-----------VLVVSSAINRANPEVASALERRIPVVPRA-EMLAE 99

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLT 163
                +G      +AV GT GK++  S +  +    G   +F IG    +++   + +L 
Sbjct: 100 LMRYRHG------IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLG 151

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                   +AS   L          +    TN+  DH+  +   
Sbjct: 152 ------------ASRYLVAEADESDASFLHLQ--------PMVAVVTNIDADHMATYGGD 191

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                     F   LP    A++  DD   +E++ +          +        +    
Sbjct: 192 FNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPTV-TYGLSEDADVRAINIRQ 250

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +  E +  D    +PG   V N+L    +    GI    +++ L     V 
Sbjct: 251 EGMRTWFTVLRPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVG 310

Query: 344 GRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGK 398
            RF+  G          +  DY H    +  ++K IR     R +V+        R +  
Sbjct: 311 RRFQVYGELQVEGGSVMLVDDYGHHPREVAAVIKAIRGGWPERRLVMVYQPHRYTRTRDL 370

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH--GIPGFIEKGNRIEAIR 450
                ++  + A++ ++ +  P  E+P       ++   I     +     + +   A  
Sbjct: 371 YEDFVQVLGE-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLA-P 428

Query: 451 TAIEMLNKQDVLVVAGKG 468
               +L   D+L+  G G
Sbjct: 429 LVKPLLRAGDILLCQGAG 446


>gi|262370166|ref|ZP_06063493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
 gi|262315205|gb|EEY96245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
          Length = 448

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 125/399 (31%), Gaps = 52/399 (13%)

Query: 71  IVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           IV+S      L +  A I    P+  V            R   K    I+A+TG++ KS+
Sbjct: 69  IVISPGLDPKLPEIQAAIAKGIPV--VSEI-----QILRRATDKP---IMAITGSNAKST 118

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V + +  + + +G+     G     +         T     L                +E
Sbjct: 119 VTTLIGLMAEHAGVKVAVGGNLGRPALDL------TKDEPDL--------------YILE 158

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L+      ++       N+  DH+D H     Y  AK      +       +   
Sbjct: 159 LSSFQLET--TSNLQAEVAVVLNMSEDHLDRHGDMMGYHTAK----HRIFQGVKKVVHNR 212

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD+ ++ ++  A       L+     ++  L+         +    +      ++    G
Sbjct: 213 DDSLTRPLVPDATPMQSFGLNAPDMNQYGVLRDDDGTIWLARGRTRLLNSAEMYIQ---G 269

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    L  AI +    +LE L+    +  R EFV                  +
Sbjct: 270 THNVANALACLALGEAINLPLESMLETLKSFKGLEHRCEFVKDVEGVRYYNDSKGTNVGA 329

Query: 369 LEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
               +           G++ ++ G  G + Q     + +       +A++       ED 
Sbjct: 330 TLAAIDGLGAAIEAKGGKVAIILGGQG-KGQDF-SALREALSKYVKVAVLI-----GEDA 382

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I  + + G    +      +A+          DV+++
Sbjct: 383 ALI-EQAVAGTTTLLHAETLEQAVALCQAHTQAHDVVLL 420


>gi|330877132|gb|EGH11281.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964058|gb|EGH64318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 486

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/422 (16%), Positives = 134/422 (31%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  +             F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++                     +             +  + +  D    
Sbjct: 226 MCVDDPVVREILPLVKRPTL-TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVISAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|226226832|ref|YP_002760938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
           aurantiaca T-27]
 gi|226090023|dbj|BAH38468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
           aurantiaca T-27]
          Length = 464

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 125/406 (30%), Gaps = 55/406 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S                 + VV      L L       +     +AVTGT+GK++ 
Sbjct: 75  VVVASPGVPPSAPPLRAAHEAGVPVVGEVEIALRL-------QPALRYIAVTGTNGKTTT 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  + +  G+ +  +G              T  S + L +             ++E 
Sbjct: 128 TALIGHLLRALGVDAADVGNIG-----------TPVSALALQET-------PPAWAALEM 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L  H   GI    G  T L  DH+D + +   Y+  K RLF   + +         
Sbjct: 170 SSFQL--HDTPGIYPDVGVLTTLSPDHLDRYTSVAEYYGDKQRLFLNAVSQSRWVATADS 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DA       R    G       +  K          H    + +           PL G+
Sbjct: 228 DAV------RELVQGIEGQWYWFSTKQTDGMDASYHHESGMLHVLGAPLMARDRVPLAGD 281

Query: 310 FQVYNALVAAGLCIAIGIDSAL------VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             V N L A    +              + + +      P R E V        I    A
Sbjct: 282 HNVANVLAAVLSVMVADASFRTGTARAALADAVATFRAPPHRLETVVHRHDVVWINDSKA 341

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               S  + L  +      R  VV   G  + +    ++ ++   +A + I        E
Sbjct: 342 TNVASTLVALAGMT-----RPTVVLLGGRHKGEPYTALLPEL-RRIAKVVI-----AYGE 390

Query: 424 DPEKIRAEI---IHGIPGFIEKGNRIEA--IRTAIEMLNKQDVLVV 464
             + I A++   + G+   ++   R  A  +  A    +  D +++
Sbjct: 391 AADTIVADLTAPLAGVVPVVQVHERSFAAVMTRAHAEASAGDAVLL 436


>gi|218905659|ref|YP_002453493.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH820]
 gi|218535271|gb|ACK87669.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH820]
          Length = 433

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/390 (14%), Positives = 111/390 (28%), Gaps = 45/390 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---- 167
           +H    + + GT+GK S  ++++ + + +             +   + +   TP      
Sbjct: 38  EHHIKCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEI 97

Query: 168 ------------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
                                     +   ++      V    V     GL   R D   
Sbjct: 98  TELVKIVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTN 156

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           +I    T +     D+                 ++    P I    D  + +V+++    
Sbjct: 157 VIHPVLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKE 216

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L           K+      +   T      +   +           AL    +  
Sbjct: 217 NRANLYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMY 276

Query: 324 AIGI----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                        +    +     GRFE +        I +D AH    +E ++K + + 
Sbjct: 277 VKTYLSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESH 333

Query: 380 TSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              + ++V F   GD+       M      +AD  I T     + D      E+      
Sbjct: 334 YKDKNVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAISAGELASYAKK 387

Query: 439 --FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +   N  EAI T +EM+ + DV ++ G
Sbjct: 388 ESKLVFENWKEAIDTKVEMIGENDVFIITG 417


>gi|50512588|gb|AAT77678.1| FolC-P protein [Haloferax volcanii]
          Length = 838

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 26/195 (13%)

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHV 341
              H +  VT+  + +  D   PL G +Q  NA +A  L   +  D     +    +   
Sbjct: 233 RVNHQEAAVTVETDAETLDVRIPLLGAYQARNAGIAVSLARQVRPDIDAEAIHRGLRNAH 292

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRFE +GT      + +D AH  ++   +   +       + +V+G   D+D G    
Sbjct: 293 WPGRFEVMGTEPT---VVLDGAHNPDACAQVATVLDEFDYDDLHLVYGAMHDKDHG---E 346

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--------- 452
           M     ++A +     D  R EDPE I + +   + G         A+ T          
Sbjct: 347 MVGALPEVASVVTCKADISRGEDPE-ILSSVFERLNGP--------AVETGGAVAAALDR 397

Query: 453 -IEMLNKQDVLVVAG 466
                +  D ++VAG
Sbjct: 398 ARARADPDDCVLVAG 412


>gi|291514888|emb|CBK64098.1| UDP-N-acetylmuramate--L-alanine ligase [Alistipes shahii WAL 8301]
          Length = 460

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 95/279 (34%), Gaps = 20/279 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       T+   DH+D + T +A   A  +   ++ P  S  I    D     V+    
Sbjct: 175 LYPDVAVVTSADADHLDIYGTHEAVKEAFSQFVRQIRPGGSLIIKRGVD----IVIDNPG 230

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A  R         +    ++    + +   ++  G        +PG   + NA+ A   
Sbjct: 231 IAVYRYSYDEPCDFYARNVQLLEGGHYRYDLVTPSGAFEGCTLGVPGWVNIENAVAAVAS 290

Query: 322 CIA------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                      +D+  +   L     V  RFEF   N+       DYAH    L   L +
Sbjct: 291 VWCAAKAGGTPLDADKLRGALASFSGVKRRFEFY-VNTPKQVYMDDYAHHPRELAATLTS 349

Query: 376 IRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KIRAEI 432
           +R +  GR I          R +       + AL  AD  ++    P  E+P   I +EI
Sbjct: 350 VRKMFPGRRITALFQPHLYTRTRDLHAEFAE-ALSHADEVVLLPIYPAREEPIPGITSEI 408

Query: 433 IH-GIPGFIEKGNRIEAIRTAIEMLNKQ-DVLVVAGKGH 469
           I   +       +R      A E+     DV++  G G+
Sbjct: 409 IARRVAAPCRIVDRD---HLADEVAAMDTDVVISFGAGN 444


>gi|260775615|ref|ZP_05884512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608796|gb|EEX34961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 456

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 107/358 (29%), Gaps = 33/358 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             +      GC   +     +     +          
Sbjct: 202 -RQFHHLVRTVPGNGRILAPQGDSAIADVLQRGCWSETEFSGEQGDWRAEKQVADGSIFT 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  V NAL+A      +G+   L  + L K      R E  G 
Sbjct: 261 VFFQGEAVGTVKWDLVGDHNVDNALMAIAAARHVGVTPDLACQSLAKFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGC---GGDRDQGKRPIMGKIAL 407
                 +Y D+AH   ++E+ +  +R  +   RI+ V         R   K  +   +A 
Sbjct: 320 EVNQITVYDDFAHHPTAIELTVGGLRNKVGKQRILAVLEPRSATMKRGVHKETLAASLAQ 379

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
             AD+  +   +    + E    +I           + ++A ++   E     D ++V
Sbjct: 380 --ADVVFLYQPD----NIEWSVEDIAQQCQQSAYASDSVDALVQMVTEQAQPGDQILV 431


>gi|309378803|emb|CBX22629.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 424

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 125/394 (31%), Gaps = 31/394 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVGEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAVNAEPVSDDTITASFERIEAERGDISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD + +  G    +    +D+          ++   +  + +     I   +   + ++ 
Sbjct: 144 LDAVNVFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPESLVA 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V  +    H  +    + +     S +        P P     Y    A
Sbjct: 203 HAETIGAKLLMV-QRDFEFHAMENIQWNYRFHPQHSDDRARNRNALPFPALRGAYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKN 375
           A     +   +  +   +  +       E +G            +D  H  ++   + ++
Sbjct: 262 ACALTVLECLNDKLPADIGAIKRGLLLVENLGRFQVLPGRPLTVLDVGHNPHAARALRRS 321

Query: 376 IRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI- 432
           +  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ ++ 
Sbjct: 322 LMNLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQDKLH 378

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            HGI          EA R A     + D +VV G
Sbjct: 379 EHGIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|288925521|ref|ZP_06419454.1| UDP-N-acetylmuramate--alanine ligase [Prevotella buccae D17]
 gi|288337737|gb|EFC76090.1| UDP-N-acetylmuramate--alanine ligase [Prevotella buccae D17]
          Length = 458

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 130/419 (31%), Gaps = 49/419 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP A  + A  +VV +     D             ++   + L        G      L 
Sbjct: 63  IPHACKKPASTLVVYTPAIPADHKELTFFREGGFEIEKRAQVLGTLTRTHKG------LC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ ++    I  +S            IS     N + +    ++         
Sbjct: 117 VAGTHGKTTTSTMCAHIMHQSQQDCNAF--LGGISKNYGTNYILSDKSDFVVIEADEFDR 174

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                                 ++      T+   DH+D + T++AY  +     E + P
Sbjct: 175 SFHW------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQP 216

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +  +    +      M++    G RV          H + +   + +         + 
Sbjct: 217 GGALILHKNLE------MQQHVQEGVRVYEYSLDEGDFHAENIKIENGEITFDFISPVEC 270

Query: 300 FDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
              +    P    + N + A  +    G  +  +   ++    V  RF+F   N R    
Sbjct: 271 VRNVMLGQPVPINIENGVAAMAMAQLNGCTAEELRYGMKTYAGVDRRFDFKIKNDR-HVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVT 416
             DYAH    +    K+IR +   R I          +  R      A  L+  D  I+ 
Sbjct: 330 LSDYAHHPKEIYQSAKSIRELYKDRKITAIFQPHLYTRT-RDFYQDFANSLSLLDEVILC 388

Query: 417 DDNPRSEDPEK------IRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D  P  E P +      I   +  G+    I K + ++ ++         DVL+V G G
Sbjct: 389 DIYPAREKPIEGVTSKLIYDNLKPGVEKSMIHKEDVLDLVK-----SRDFDVLLVLGAG 442


>gi|229175139|ref|ZP_04302655.1| Folyl-polyglutamate synthetase [Bacillus cereus MM3]
 gi|228608275|gb|EEK65581.1| Folyl-polyglutamate synthetase [Bacillus cereus MM3]
          Length = 433

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 90/309 (29%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKVNFCDVVLFETGLGGRFDS-TNVIYPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           ++V K  H     +            + 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVRDEEALQVIQKVAKENHANLYEMGKHFTVLHKQSGED 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 239 GEQFDFICPFATFEDVRISMKGVHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K + +    + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKNKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   N  EAI T +EM+ 
Sbjct: 354 -MVDQLETIADEIIFTT----FAFDRAISADKLASYSKKESKLVFENWKEAIDTKVEMIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 ENDVFIITG 417


>gi|331695816|ref|YP_004332055.1| FolC bifunctional protein [Pseudonocardia dioxanivorans CB1190]
 gi|326950505|gb|AEA24202.1| FolC bifunctional protein [Pseudonocardia dioxanivorans CB1190]
          Length = 501

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKR 399
             PGR E + ++     + +D AH  +    +  ++       R++ V G   D+D   R
Sbjct: 354 HTPGRLERMRSDPAAPTVLLDAAHNPHGARALAASLLSEFRFTRLVGVVGVMRDKDA--R 411

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLN 457
            ++ ++   L +I +   + PR+ D +++    +   G      +    +AI  A+E+  
Sbjct: 412 GLLAELEPALHEIVVTAAETPRAMDADELATLAVEVFGAERVSVEPVLAQAIEQAVELAE 471

Query: 458 K 458
           +
Sbjct: 472 E 472


>gi|326569002|gb|EGE19071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC1]
 gi|326569302|gb|EGE19363.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC7]
 gi|326571978|gb|EGE21983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis BC8]
          Length = 460

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 106/360 (29%), Gaps = 28/360 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++  + +  I Q SG+ +        +     D+R      + LA 
Sbjct: 101 KDRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGF--LIGGVPLVNTDDRR-----LSLAF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAK 230
             S    +    +  +         R   +     +    NL  DH D      A     
Sbjct: 154 QHSSYLGKQFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQF 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +   +  K    I     +    + K       R    G       L           
Sbjct: 214 HHMIRMIPSKGQIIIPANTPSLETTLDKGVWTTVVRTSLNGDAEWQAKLDANDGSSFW-- 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +          + + G   V NAL A      IG+   +    L     +  R E +G
Sbjct: 272 --VHHNNTSAMVRWSMSGLHNVNNALTAIAAAHHIGVSVEMACTALSHFGGIKRRMELIG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIAL 407
            +     ++ D+AH   ++   L    + +   RI  +     +  +    RP +   A 
Sbjct: 330 -DVDDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAA 388

Query: 408 DLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +AD  I         +P+ +     E I   P      +    I          D +++
Sbjct: 389 -IADQVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIII 440


>gi|282854260|ref|ZP_06263597.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes J139]
 gi|282583713|gb|EFB89093.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes J139]
 gi|314923247|gb|EFS87078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL001PA1]
 gi|314980970|gb|EFT25064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL110PA3]
 gi|315091701|gb|EFT63677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL110PA4]
 gi|315103161|gb|EFT75137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL050PA2]
          Length = 498

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 82/303 (27%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 175 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 235 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDDLIVDRAFVE 294

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 295 QRATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              S    +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 355 HQASGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 409 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 463 VVA 465
           ++A
Sbjct: 463 LMA 465


>gi|167758805|ref|ZP_02430932.1| hypothetical protein CLOSCI_01147 [Clostridium scindens ATCC 35704]
 gi|167663545|gb|EDS07675.1| hypothetical protein CLOSCI_01147 [Clostridium scindens ATCC 35704]
          Length = 430

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIA 406
                 +    ++D AH  ++   + +++ T   G R+I + G   D++  K   +  I 
Sbjct: 294 RFTCLMKKPLFFIDGAHNEDAARRLRESVETYFPGKRLIYIMGVFQDKEYEK---IAAIM 350

Query: 407 LDLADIA--IVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLNKQDV 461
             LA     +   D  R+   E++   +    P       + +  EA R A+   + +D+
Sbjct: 351 APLAKSVHTVNLPDEHRTLPAEELARVMQRHCPSDVIVQAEPSIQEAGRHALSEADNKDI 410

Query: 462 LV 463
           ++
Sbjct: 411 IL 412


>gi|325261331|ref|ZP_08128069.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
 gi|324032785|gb|EGB94062.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
          Length = 458

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 90/279 (32%), Gaps = 22/279 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+D+ +  +   ++    F  LLP +   +I ++    +E+    + 
Sbjct: 178 YPRISVILNIEEDHLDFFKDLEDIRHS-FHQFASLLPPDGTLVINSNIQNYEEICSGLNC 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 S                       +         +  + G+  V NAL +  + 
Sbjct: 237 GIITYGSSPKSDYSAQNISYDDKGCVSFDLLRKGIPAEHVVLSVTGDHNVSNALASIAVA 296

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             + I S ++ + L        RFE+ GT + G  I  DYAH    +   LK  +     
Sbjct: 297 ELLDIPSDMIQKGLISFSGTDRRFEYKGTLN-GTTIVDDYAHHPTEIAATLKAAQHYPHQ 355

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII-- 433
            +  VF      R +       + AL  AD  ++ D     E          +  E++  
Sbjct: 356 GLWCVFQPHTYTRTKAFFHEFAE-ALSHADHVVLADIYAARETDTLGISSSDLAQELLNL 414

Query: 434 ----HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               H  P F E  N         +     D+L+  G G
Sbjct: 415 GTDSHYFPCFEEIEN------FLKKNCKPGDLLITMGAG 447


>gi|314967014|gb|EFT11113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL082PA2]
 gi|315093065|gb|EFT65041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL060PA1]
 gi|327327834|gb|EGE69610.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL103PA1]
          Length = 498

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 82/303 (27%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 175 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 235 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDDLIVDRAFVE 294

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  + + L  LH+   R E V
Sbjct: 295 QRATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAIGQGLRDLHLGGHRIETV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              S    +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 355 HQASGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 409 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 463 VVA 465
           ++A
Sbjct: 463 LMA 465


>gi|242278166|ref|YP_002990295.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio salexigens
           DSM 2638]
 gi|259509766|sp|C6BYG5|MURC_DESAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|242121060|gb|ACS78756.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio salexigens DSM
           2638]
          Length = 470

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 139/377 (36%), Gaps = 48/377 (12%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYG 111
            G   +  A     + +V S+A S  +           PI+     R   L+       G
Sbjct: 57  HGADNVNDA-----DVVVKSTAISDDNPELVKARELGIPII----PRAEMLAELMRLRTG 107

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +AV GT GK++  S +  I   + L    I     +++F  + RL         
Sbjct: 108 ------IAVAGTHGKTTTTSLLATIFTEAELDPTVI-IGGRLNTFGSNARLGDG-----Q 155

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             ++       + + +                 I    TN+ +DH+D++  Q+A      
Sbjct: 156 FLIAEADESDGSFLCLA---------------PIITVVTNVDKDHLDFYGGQEAID-ESF 199

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R F   +P     ++  DD   + ++    +     ++ G         ++ +   +   
Sbjct: 200 RKFMNSIPFYGMNVVCGDDPGVQRLL---PSIKRPCMTYGLNKGNRLRGEILSCEVRSLF 256

Query: 292 TISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
            + ++ K   +     PG+  V NAL A G+ +  G+D  ++L  L     V  RFE  G
Sbjct: 257 KVYLDEKLLGEVSLAQPGKHNVLNALGAIGVSLEAGLDPKVILSGLSNFMGVGRRFEKKG 316

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--D 408
             S+G  +  DY H    ++  ++  ++    R +VV      R      + G+     +
Sbjct: 317 -ESKGILVVDDYGHHPAEIQATIETAKSCFPQRRLVV-AFQPHRFTRTEALFGEFCKTFE 374

Query: 409 LADIAIVTDDNPRSEDP 425
            AD  ++T+  P SEDP
Sbjct: 375 KADELLLTEIYPASEDP 391


>gi|261405378|ref|YP_003241619.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261281841|gb|ACX63812.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 458

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 142/417 (34%), Gaps = 51/417 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           QGA+ +V S+A S  +       + N P+L          + A  L  +     +AV G 
Sbjct: 62  QGADLVVYSTALSKDNVERVEAEKLNIPVLH------RAQMLARLLNER---KGVAVAGA 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++ +S +  + +  G+                   +     + +         + V 
Sbjct: 113 HGKTTTSSMIALVMEECGVD---------------PTFIIGGEIMNVGTNAKAGEGEHVV 157

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             + E+    L  H   G+        N+  DH++ ++       A    F   +  +  
Sbjct: 158 AEADESDGSFLQYHPWLGV------VLNIEADHLENYEGDFNRLKAAYVQFLSQIKADGT 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD   + ++            +    ++     V    +     +    +     
Sbjct: 212 AVVCADDNNIQAILPDLKC-NVTTYGIHADAEYTATNLVLGDRHVSFTMLHNGMELGTVE 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  VYNA+     C+  GI    ++E + K +    RF+ +G  + G  +  DYA
Sbjct: 271 LSVPGKHNVYNAMATVICCLKSGISFGAIVEAIVKFNGAKRRFQVLG-EAEGILVIDDYA 329

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPR 421
           H    +E  +   +  T  RII VF      R         +   + AD  I+TD  +P 
Sbjct: 330 HHPTEIEATISAAKA-TGKRIIAVFQPQRYSRTFFLLDAFSRAFGE-ADEVIITDIYSPA 387

Query: 422 SED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E            E I      G      K +    +      + + D+++  G G
Sbjct: 388 GEKQIEGISSGKLVELIVQNSNAGARYLPTKEDV---LSDLKGRVKEGDLVLTMGAG 441


>gi|241765423|ref|ZP_04763393.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
 gi|241364828|gb|EER59801.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
          Length = 477

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 134/417 (32%), Gaps = 50/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V S+A +  +          I VV      L+       G      +A+ GT GK++ 
Sbjct: 67  AVVTSTAVTGDNPEVLAAREKKIPVVPRAL-MLAELMRLKQG------IAIAGTHGKTTT 119

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S V  +   +G   +F IG    ++S   + +L +   I +    S  S          
Sbjct: 120 TSLVTSVLAEAGLDPTFVIG--GRLNSAGANAKLGSGDYIVVEADESDASFLN------- 170

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        +  +    TN+  DH++ +             F   +P    AI+  
Sbjct: 171 -------------LLPVMAVVTNIDADHMETYGHDFGRLKKAFVDFLHRMPFYGTAILCV 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFDFLF 304
           D    ++++               +   +    V A   + + T+         D + + 
Sbjct: 218 DSPAVRDILPSVTCPVTSYGF--SEDAQVRAINVRAEAGQMRFTVQRRNGVTLPDMEVVL 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGRIYV 360
            L GE  V NAL A  + + + I    VL  L     V  RF+  G           +  
Sbjct: 276 NLAGEHNVLNALSAIAVAVELNIPDEAVLRALAGFKGVGRRFQRYGDLPAKGGGHFTVID 335

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDD 418
           DY H    +   L   R    GR +V+        + +       K+    AD  ++T+ 
Sbjct: 336 DYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVKVIGS-ADAVLLTEV 394

Query: 419 NPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E P        +   +   G    +   N  + ++   +     DV++  G G
Sbjct: 395 YAAGEAPVVAADGRSLARALRVAGRVEPVFVDNVADMVQVIADNAKDGDVVMCMGAG 451


>gi|115372723|ref|ZP_01460029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823490|ref|YP_003955848.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370204|gb|EAU69133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396562|gb|ADO74021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 454

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 136/399 (34%), Gaps = 46/399 (11%)

Query: 69  EAIVVSSAYSL--QDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
             +VVS    L   +F A   +  PI   V          ASR     P  +  +TGT+G
Sbjct: 72  ALVVVSPGVPLSRPEFKAARAAGVPIWGEV--------ELASRFLSAVP--LFGITGTNG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  +   ++  R G  +F  G      S A      TP                   +
Sbjct: 122 KSTTTALTGELFSRGGGRTFVGGNLGRPFSEAA----LTPEA--------------WDAL 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VE SS  L+   +  ++    +  NL  DHID +++  AY  AK R+F         A+
Sbjct: 164 VVELSSFQLE--GIQQMRARGAAILNLTPDHIDRYESHAAYGQAKTRIFLN-QGVGDFAV 220

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD     + ++A          G   + + L               ++         
Sbjct: 221 VNVDDPDVVGLARQARVPRYGFSLTGNPVEALELAGRAVAQEGGFRLDFLKETYSLTNRA 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     NA+ A  L    G+    V   L+    +P R E V        +    A  
Sbjct: 281 LRGAHNAQNAMAATLLARLGGVPREAVQAGLDGYPGLPHRLESVRVLDGVEWVNDSKATN 340

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +S+ + L+          +++   G  +    +P++ +        A++T      +D 
Sbjct: 341 VDSVLVALRAFAG-----NLLLIAGGKGKGAPYQPMVDE--GRGKVKAVLTI----GQDA 389

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E + A      P     G    A+R A E+    D +++
Sbjct: 390 ELLAAAYREAAP-VHACGTLEVAVRRARELAKGGDTVLL 427


>gi|330811581|ref|YP_004356043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379689|gb|AEA71039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 448

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 115/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I+A++G++ KS+V + V ++   +G      G   T               +
Sbjct: 103 FARNAKAPIIAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +    AY  
Sbjct: 150 DLLSDDVEL-------YVMELSSFQLET--TDHLGAEVATVLNVSEDHMDRYSGLPAYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          +    DA ++ ++      G    S G          +   + +
Sbjct: 201 AKHRIFRGARQ----VVFNRQDALTRPLLGE----GMPCWSFGLGVPDFKGFGLREENGE 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L     +  R ++
Sbjct: 253 KYLAFEFQNLMPVRELKIRGAHNQANALAALALGHAVGLPFDAMLSALRTFAGLEHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A    +    ++ +     G+  +V   GGD        +      
Sbjct: 313 VRDLDGVAWYNDSKATNVGAALAAIEGLGADIEGK--LVLIAGGDGKGADFKDLRDPVAA 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D E I   +   +P  +  G+  EA++    + +  D +++
Sbjct: 371 NCRAVVL-----MGRDRELIAQALGDAVP-LVRVGSLDEAVQQCRALAHPGDAVLL 420


>gi|319761497|ref|YP_004125434.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
 gi|317116058|gb|ADU98546.1| cyanophycin synthetase [Alicycliphilus denitrificans BC]
          Length = 863

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 13/236 (5%)

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A +               +            + +++ +   +  +     SV  ++ 
Sbjct: 605 PHVAAMATSCPGKVIFFAADRHHPVMATHRAQGNRVVYVDEGHIVAAEGSWRESVPLREI 664

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV----PGRFEFVGTNSRGG 356
                    FQV NA+ A     A+G+    +   L          PGRF     + RG 
Sbjct: 665 PITRGGAIGFQVENAMAAIAATWALGLPWQTIRRGLAGFVNDSDNAPGRFNV--MDYRGA 722

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            +  DY H  +++  +++ +  I + +  VV    GDR         +      D  ++ 
Sbjct: 723 TLIADYGHNPDAIRALVQAVDAIPARQRSVVISGAGDRRDQDIVEQTRTLGAAFDDVVLY 782

Query: 417 DDNP-RSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            D   R     ++ A +  G+ G        E      AI  A+E L   D+ +V 
Sbjct: 783 QDACQRGRADGEVLALLKQGLEGAPRTRYVTEIHGEFVAIDHALERLQPGDLCLVL 838


>gi|226360229|ref|YP_002778007.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus opacus B4]
 gi|254766018|sp|C1AU54|MURC_RHOOB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226238714|dbj|BAH49062.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus opacus B4]
          Length = 503

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 142/457 (31%), Gaps = 79/457 (17%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G   +V + A   +D    + +     P+++        ++ AS +
Sbjct: 59  GHD--AGALDLLPGGPTVVVTTHAAIPKDNPELVEAARRGIPVILRP------AVLASLM 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G      L V+GT GK+S  S +    Q  G           ++    +    +     
Sbjct: 111 QGH---RTLLVSGTHGKTSTTSMLVVALQHCGFD-PSFAVGGELNEAGTNAHHGSGDVFV 166

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S                       L          TN+  DH+DY  + +AY   
Sbjct: 167 AEADESD--------------------GSLLQYDPNVVVVTNVEADHLDYFGSPEAYIQV 206

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---------- 279
               F   L      +   DD  S  + +R    G   + V   G               
Sbjct: 207 -FDDFAARLSHGGLLVACLDDPGSAALAQRVAARGLPGVRVLGYGSAEDADGAFAPIDGV 265

Query: 280 --------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    +   +    Q  ++ E         +PG     NAL A       G D   
Sbjct: 266 EVGARLLSFEARDVGGVLQFQLAGEQAPRTIRMNVPGRHMALNALAALLAAREAGADVDE 325

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI--------------- 376
           +LE +     V  RF+F G    G R++ DYAH    +  +L                  
Sbjct: 326 ILEGIAGFGGVHRRFQFTGREH-GVRVFDDYAHHPTEVRAVLGAAADLVSQPHEADRRES 384

Query: 377 -RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
              + SG++IVVF      R        G  ALDLAD  +V D     E+P    +  + 
Sbjct: 385 EEPVRSGKVIVVFQPHLYSRTATFAEEFGH-ALDLADEVMVLDVYGAREEPLPGVSGALV 443

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +        + +  +A R    + +  DV++  G G
Sbjct: 444 ALSVSKPVHYQPDLSQAPRQVAALASPGDVVITMGAG 480


>gi|90580229|ref|ZP_01236036.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
 gi|90438531|gb|EAS63715.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
          Length = 487

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 140/420 (33%), Gaps = 52/420 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           QGA  +V S+A S ++      +   I VV   R+   L+      +G      +A+ GT
Sbjct: 80  QGASVVVASTAISKENPELMAATELRIPVV---RRAEMLAELMRYRHG------IAIAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  +   QI   +GL    +     + S   + RL                     
Sbjct: 131 HGKTTTTALTTQIYSEAGLDPTFV-NGGLVKSAGTNARLG----------------CSRY 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            ++    S     H    ++ +    TN+  DH+D +             F   LP    
Sbjct: 174 LIAEADESDASFLH----LQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGL 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDF 302
           A++  DD   +E++ R                   +     +  +   T+  + K   + 
Sbjct: 230 AVMCIDDPVVRELLPRVGRPMLTYGFAEDADV--RITNYTQMGQQGHFTVLRKDKPALNI 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
              +PG+    NA  A  +    G+D   ++  L +      RF+ +G    G     + 
Sbjct: 288 TLNIPGKHNALNATAAIAVATEEGVDDDAIMRALIEFEGTGRRFDHLGEFETGNGNVMLV 347

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD 417
            DY H  + +++ ++  R   + + +V+        + +        +     D+ ++ D
Sbjct: 348 DDYGHHPSEVDVTIQAARAGWADKRLVMIFQPHRYSRTRDLYDDFANVLDQ-VDVLVMLD 406

Query: 418 DNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIE--AIRTAIEMLNKQDVLVVAGKG 468
                E P        +   I   G    I      E  AI     ++   D+++  G G
Sbjct: 407 VYSAGEAPIAGADGRALCRTIRSRGKIDPIFVPEAEELPAILA--NIIQNDDLVLTQGAG 464


>gi|160933632|ref|ZP_02081020.1| hypothetical protein CLOLEP_02486 [Clostridium leptum DSM 753]
 gi|156867509|gb|EDO60881.1| hypothetical protein CLOLEP_02486 [Clostridium leptum DSM 753]
          Length = 432

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKR 399
            +P R E +G +     + +D AH   +  ++ + +      R I+ V G   D+D    
Sbjct: 289 YIPARMEVLGRSPL---VILDGAHNPGAARVLAQALEKYLPHRKIIGVMGMLKDKDSRSS 345

Query: 400 PIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
                        A++T    NPR+    ++             + +  +AI  A ++  
Sbjct: 346 LRSLASLFQ----ALITASPKNPRALPAAELADRAREYCSQVFAEEDLSKAICLARKLAG 401

Query: 458 KQDVLVVAG 466
           +   +V+ G
Sbjct: 402 EDGAIVICG 410


>gi|121535920|ref|ZP_01667716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
           carboxydivorans Nor1]
 gi|121305491|gb|EAX46437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
           carboxydivorans Nor1]
          Length = 449

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 89/277 (32%), Gaps = 16/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  NL  DH+D H++   Y  A           +   ++ 
Sbjct: 161 EISSFQLE--GVVDFRPRIAAVLNLTPDHLDRHRSLDNYK-AMKERIFRNQRPDDYLVLN 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   +++ +RA +                L+    +   +  T ++          L 
Sbjct: 218 YDDPLVRDMAERAPSQAVFFSRKARLSTGARLEDETIVMCWEGKTEAICPVK---EMKLF 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A+ +    G D+  +   L     V  R E V             A    
Sbjct: 275 GAHNIENALAASCVAFLAGADAGAIGAVLRTFMGVEHRIEPVAEIRGVRYYNDSKATNPE 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L+          I++   G D+       M ++A    D  I+  +    E   +
Sbjct: 335 SAIKALEAFDGH-----IILIAGGRDKKTDLTEFM-ELAKQKVDHLILLGE--AKERFYQ 386

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A   HG+          +A+  A  +     V+++
Sbjct: 387 --AAAAHGVTNIHLVDKFEDAVTLAYRLARPPQVVLL 421


>gi|229093553|ref|ZP_04224655.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-42]
 gi|228689883|gb|EEL43688.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-42]
          Length = 433

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 110/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENRAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K +++    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVKSHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMIGENDVFIITG 417


>gi|326562287|gb|EGE12613.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 103P14B1]
 gi|326574539|gb|EGE24480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis CO72]
 gi|326575490|gb|EGE25415.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 101P30B1]
          Length = 460

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 106/360 (29%), Gaps = 28/360 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++  + +  I Q SG+ +        +     D+R      + LA 
Sbjct: 101 KDRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGF--LIGGVPLVNTDDRR-----LSLAF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAK 230
             S    +    +  +         R   +     +    NL  DH D      A     
Sbjct: 154 QHSSYLGKQFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQF 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +   +  K    I     +    + K       R    G       L           
Sbjct: 214 HHMIRMIPSKGQIIIPANTPSLETTLDKGVWTTVVRTSLNGDAEWQAKLDANDGSSFW-- 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +          + + G   V NAL A      +G+   +    L     +  R E +G
Sbjct: 272 --VHHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIAL 407
            +     ++ D+AH   ++   L    + +   RI  +     +  +    RP +   A 
Sbjct: 330 -DVDDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAA 388

Query: 408 DLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +AD  I         +P+ +     E I   P      +    I          D +++
Sbjct: 389 -IADQVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIII 440


>gi|326423916|ref|NP_760865.2| dihydrofolate synthase [Vibrio vulnificus CMCP6]
 gi|319999293|gb|AAO10392.2| Dihydrofolate synthase [Vibrio vulnificus CMCP6]
          Length = 421

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 98/367 (26%), Gaps = 21/367 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +             
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRINGQDLADEKH 105

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    +S+       +   L  ++L      ++    +       A      
Sbjct: 106 CEAFDFIEQQRGDISLSL----FEYGTLAALRLFQTEKVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 162 DVSVITSLALDHVDWLGDDINVIGFEKAGIYRSGKPAICGQPTPPSTVAAHADDIGAEFY 221

Query: 288 KQQVTISVEGKDFDFLFPL-------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +  +    +     + +              +     A  L      +  L   ++    
Sbjct: 222 QVGIQFDYQLSGEGWRWQHGAFALEDLPLPGLPLPNAATALMALGASNLELSDINIVNGL 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
                   +        I +D AH  +S E ++  +++   G+ I  V G   D+D    
Sbjct: 282 KNAKLAGRMQVLQTAPLILLDVAHNPHSAEYLVTQLQSRYQGKTIHAVIGMLKDKDIKST 341

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             +          A +T   PR+   E++   +  G   +    +   A   A+      
Sbjct: 342 LEVLAPVTRHWYPASLT--GPRAATAEELIQYLPQGTQSYT---DPAHAFDQALSQAQSD 396

Query: 460 DVLVVAG 466
           ++++V G
Sbjct: 397 EIVLVVG 403


>gi|330811578|ref|YP_004356040.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379686|gb|AEA71036.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 486

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 139/433 (32%), Gaps = 61/433 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAN--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG    +++   + +L T   +      
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADE 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       ++ +    TN+  DH+  +             F
Sbjct: 175 SDASFLH--------------------LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++             G +     +             + 
Sbjct: 215 LHNLPFYGLAVVCLDDPVVREILPLIKR-PTMTYGFGEEADVRAINVRQQGMQTFFTVLR 273

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + +  D    +PG   V NAL    +    G+    +++ L     V  RF+  G    
Sbjct: 274 PDREPLDVSVNMPGNHNVLNALATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPV 333

Query: 355 ---GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDL 409
                 +  DY H    +  ++K +R     R +V+        + +       ++  D 
Sbjct: 334 DGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDLYDDFVQVLAD- 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML------ 456
           A++ ++ +  P  E+P       I G        +  +        I   +++       
Sbjct: 393 ANVLLLMEVYPAGEEP-------IPGADSRQLCHSIRQRGQLDPIYIERGVDLAPLVKPL 445

Query: 457 -NKQDVLVVAGKG 468
               D+L+  G G
Sbjct: 446 LRAGDILLCQGAG 458


>gi|83814912|ref|YP_446443.1| Mur ligase family protein [Salinibacter ruber DSM 13855]
 gi|83756306|gb|ABC44419.1| Mur ligase family, glutamate ligase domain protein [Salinibacter
           ruber DSM 13855]
          Length = 543

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 124/367 (33%), Gaps = 30/367 (8%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            RL  +   +++ +TG+ GK+S    V ++ ++              + +A  +   TP 
Sbjct: 186 RRLQTRSDLSVVGITGSYGKTSTKFIVAELLRQ------------KYNVYATPSSYNTPM 233

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            + LA          V  +       G D   L  I     S               Q  
Sbjct: 234 GLCLAVNEHLKPEHQVLVLEYGIRYPG-DMDELCDIAEPDASVVTTIGVAHLETMGSQDR 292

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI- 285
             A+  +  E    + PA++ ADD     + +RA     R+ + G+    I    +    
Sbjct: 293 IAAEKGVLVERTAPDGPAVLNADDERVAAMAERAAGPVWRISTEGHPDADITADDIRYDT 352

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                      G    F   L G   V N L+A  +  ++G+    +   + ++  +  R
Sbjct: 353 GGTAFDVTDDTGTTVTFETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIEHR 412

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSL--EMILKNIRTITSGRIIVV---FGCGGDRDQGKRP 400
            +     SRG    +D A  SN +     ++ +  +  G+ ++V       GDR   +  
Sbjct: 413 LQL---RSRGDVTIIDDAFNSNPVGARNAVEILSEMDGGKRVIVTPGMVELGDRQWTENK 469

Query: 401 IMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEML 456
             G +      D+ ++  +    E    I+A +  G       +   +  EA       L
Sbjct: 470 DFGVVLAQHDLDLVVLVGE----EQTAPIQAGLSEGGAPAERIMVVDSLAEAQEILERRL 525

Query: 457 NKQDVLV 463
              DV++
Sbjct: 526 GPGDVVL 532


>gi|56551728|ref|YP_162567.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|59803054|sp|Q9RNM7|MURC_ZYMMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56543302|gb|AAV89456.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 476

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 124/372 (33%), Gaps = 45/372 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA    +          I VV   R+   L+           ++ +AV GT G
Sbjct: 68  AAVVVVSSAIHRGNPEVEAALENRIPVV---RRAEMLAELMRL------KSTVAVAGTHG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    G+    I     I+S+  + RL                      +
Sbjct: 119 KTTTTSMVAALLDAGGIDPTVI-NGGIINSYGSNARLGDSD-----------------WM 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA        RLDG        TN+  +H+D++ + +   +A    F   +P    A 
Sbjct: 161 VVEADESDGSFLRLDGTL---AIVTNIDPEHLDHYGSFEKVQDA-FVEFVSNVPFYGAAF 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDF 300
           +  D    + ++ R  +          Q     +         +   +         +  
Sbjct: 217 LCIDHPVVQSILPRIRDRRLITYGFSAQADIRAVDITPISGGNRFTAVIRGRDGDIRRIE 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-- 358
           +   P+PG   + NAL A G+ +   I  A + +   +   V  RF  VG    G     
Sbjct: 277 NIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKIGDGSVL 336

Query: 359 -YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
              DY H    ++ +L   R     R+I V      R      +M +   A + AD+  V
Sbjct: 337 VIDDYGHHPVEIKAVLSAARESAQQRVIAVV--QPHRFSRLHDLMTEFQSAFNDADMVFV 394

Query: 416 TDDNPRSEDPEK 427
                  E P  
Sbjct: 395 APVYAAGEQPIA 406


>gi|88858800|ref|ZP_01133441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
 gi|88819026|gb|EAR28840.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
          Length = 442

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/395 (14%), Positives = 124/395 (31%), Gaps = 55/395 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   +L            + V+ +         +R+  K    ++AVTG++GKS+V 
Sbjct: 75  IIISPGIALSTHEVQQAIAANVEVIGDI-----ELFARINDKP---VVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +   ++   +G +    G                 SP+ L  +        +    +E S
Sbjct: 127 TLAARVLADAGYNVGLAGNIGI-------------SPLDLFAS-------EIDVFVLELS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +  I+ +  NL  DH+D +     Y+ AK  ++                
Sbjct: 167 SFQLET--TTSLAPISATILNLCEDHMDRYAGMDEYYAAKQTIYRNAQWAVYNQADLLTY 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            +  +       +G        +       +   I     +TI  +              
Sbjct: 225 PHEAKATLSFGESGSDYHLEHDESGSFFAYQQQTILPVSDLTIVGKHNQL---------- 274

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL    L     IDS +     +    +  R +FV             A    +  
Sbjct: 275 ---NALAVMALLKPFNIDSFVYSTSFKAFTGLAHRCQFVAQIDGVNFYNDSKATNVGACI 331

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             ++ +   +  + +++   G  +     P+    A  + ++  +  D        K  A
Sbjct: 332 SSIEGL--YSPNKRLILIVGGDGKGADFSPLQYYFAAQVTELICLGRDG-------KALA 382

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +  G        +  +A+  A ++    D +++A
Sbjct: 383 ALKAG---SHFVSSMAQAVACAKKLAASGDNVLLA 414


>gi|225175194|ref|ZP_03729190.1| FolC bifunctional protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169370|gb|EEG78168.1| FolC bifunctional protein [Dethiobacter alkaliphilus AHT 1]
          Length = 431

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 11/181 (6%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHLEKLHVVPGRFEFV 349
              S + K  +    L G  QV NA +A      + +      +         PGR E  
Sbjct: 240 NYWSRQRKLDNLQISLLGPHQVRNAALAVATRELLPVPLDTDAIYRGLAAAKWPGRLEVF 299

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALD 408
                   + VD AH  + ++ +   + TI  GR + +V G  GD+       +  + + 
Sbjct: 300 SRRPL---VLVDGAHNIDGIKALKSALDTILDGRPLRLVLGILGDKAVD---EILSLIVP 353

Query: 409 LADI-AIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVA 465
           LA    IVT  DNPR+ +P ++           +   +   EA+   +    +++ L ++
Sbjct: 354 LATAGLIVTKPDNPRASNPREVAELARRYTSAPVAATDTVEEAVALGLAQTGEEEALCIS 413

Query: 466 G 466
           G
Sbjct: 414 G 414


>gi|289426865|ref|ZP_06428591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes J165]
 gi|295130331|ref|YP_003580994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes SK137]
 gi|289159954|gb|EFD08132.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes J165]
 gi|291376296|gb|ADE00151.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes SK137]
 gi|313764737|gb|EFS36101.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL013PA1]
 gi|313772513|gb|EFS38479.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL074PA1]
 gi|313807243|gb|EFS45730.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL087PA2]
 gi|313809749|gb|EFS47470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL083PA1]
 gi|313815802|gb|EFS53516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL059PA1]
 gi|313818289|gb|EFS56003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL046PA2]
 gi|313820051|gb|EFS57765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL036PA1]
 gi|313823140|gb|EFS60854.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL036PA2]
 gi|313825583|gb|EFS63297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL063PA1]
 gi|313827822|gb|EFS65536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL063PA2]
 gi|313830658|gb|EFS68372.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL007PA1]
 gi|313833878|gb|EFS71592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL056PA1]
 gi|314915228|gb|EFS79059.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL005PA4]
 gi|314919806|gb|EFS83637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL050PA3]
 gi|314925473|gb|EFS89304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL036PA3]
 gi|314931821|gb|EFS95652.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL067PA1]
 gi|314955977|gb|EFT00375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL027PA1]
 gi|314958372|gb|EFT02475.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL002PA1]
 gi|314960276|gb|EFT04378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL002PA2]
 gi|314968080|gb|EFT12179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL037PA1]
 gi|314973660|gb|EFT17756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL053PA1]
 gi|314976253|gb|EFT20348.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL045PA1]
 gi|314978262|gb|EFT22356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL072PA2]
 gi|314983538|gb|EFT27630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL005PA1]
 gi|314987726|gb|EFT31817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL005PA2]
 gi|314990205|gb|EFT34296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL005PA3]
 gi|315080333|gb|EFT52309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL078PA1]
 gi|315084592|gb|EFT56568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL027PA2]
 gi|315085928|gb|EFT57904.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL002PA3]
 gi|315088654|gb|EFT60630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL072PA1]
 gi|315096280|gb|EFT68256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL038PA1]
 gi|315098263|gb|EFT70239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL059PA2]
 gi|315101046|gb|EFT73022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL046PA1]
 gi|327325916|gb|EGE67706.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL096PA2]
 gi|327332211|gb|EGE73948.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL096PA3]
 gi|327442833|gb|EGE89487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL013PA2]
 gi|327446204|gb|EGE92858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL043PA2]
 gi|327447813|gb|EGE94467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL043PA1]
 gi|327451055|gb|EGE97709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL087PA3]
 gi|327453590|gb|EGF00245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL083PA2]
 gi|328753088|gb|EGF66704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL087PA1]
 gi|328753743|gb|EGF67359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL020PA1]
 gi|328759167|gb|EGF72783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL025PA2]
 gi|328760587|gb|EGF74155.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL099PA1]
          Length = 498

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 81/303 (26%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 175 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 235 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVE 294

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 295 QRATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 355 HQAGGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 409 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 463 VVA 465
           ++A
Sbjct: 463 LMA 465


>gi|289426292|ref|ZP_06428038.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes SK187]
 gi|289153457|gb|EFD02172.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes SK187]
 gi|313791787|gb|EFS39898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL110PA1]
 gi|313802126|gb|EFS43358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL110PA2]
 gi|313838458|gb|EFS76172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL086PA1]
 gi|314963085|gb|EFT07185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL082PA1]
 gi|315077549|gb|EFT49607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL053PA2]
 gi|327452863|gb|EGE99517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL092PA1]
          Length = 498

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 81/303 (26%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 175 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 235 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVE 294

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 295 QRATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 355 HQAGGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 409 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 463 VVA 465
           ++A
Sbjct: 463 LMA 465


>gi|241762280|ref|ZP_04760361.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752697|ref|YP_003225590.1| UDP-N-acetylmuramate--L-alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|241373183|gb|EER62813.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552060|gb|ACV75006.1| UDP-N-acetylmuramate/alanine ligase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 476

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 124/372 (33%), Gaps = 45/372 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA    +          I VV   R+   L+           ++ +AV GT G
Sbjct: 68  AAVVVVSSAIHRGNPEVEAALENRIPVV---RRAEMLAELMRL------KSTVAVAGTHG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    G+    I     I+S+  + RL                      +
Sbjct: 119 KTTTTSMVAALLDAGGIDPTVI-NGGIINSYGSNARLGDSD-----------------WM 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA        RLDG        TN+  +H+D++ + +   +A    F   +P    A 
Sbjct: 161 VVEADESDGSFLRLDGTL---AIVTNIDPEHLDHYGSFEKVQDA-FVEFVSNVPFYGAAF 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDF 300
           +  D    + ++ R  +          Q     +         +   +         +  
Sbjct: 217 LCIDHPVVQSILPRIRDRRLITYGFSAQADIRAVDITPISGGNRFTAVIRSRDGDIRRIE 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-- 358
           +   P+PG   + NAL A G+ +   I  A + +   +   V  RF  VG    G     
Sbjct: 277 NIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKIGDGSVL 336

Query: 359 -YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
              DY H    ++ +L   R     R+I V      R      +M +   A + AD+  V
Sbjct: 337 VIDDYGHHPVEIKAVLSAARESAQQRVIAVV--QPHRFSRLHDLMTEFQSAFNDADMVFV 394

Query: 416 TDDNPRSEDPEK 427
                  E P  
Sbjct: 395 APVYAAGEQPIA 406


>gi|169833121|ref|YP_001694158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226722947|sp|B1IAM3|MURD_STRPI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|168995623|gb|ACA36235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 450

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 125/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYNNPMIEKALAKGIPVL----TEVELAYLISE------APIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH +   Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K   +     +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKDLTSKTEATVIPFSTLEKVDGAYLEDGQLYFRGEVVMAANEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +     +D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRDVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELAIQGDVVLL 421


>gi|113460505|ref|YP_718569.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
 gi|123131920|sp|Q0I1D2|MURC_HAES1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|112822548|gb|ABI24637.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
          Length = 476

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 137/421 (32%), Gaps = 54/421 (12%)

Query: 67  GAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +VVSSA    +           P++      + L+      +G      +A+ GT 
Sbjct: 77  GASVVVVSSAIKGDNIEVITAHEKRIPVIQRA---QMLAEIMRFRHG------IAIAGTH 127

Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPT---STISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  + V  I  ++G   +F  G     +  +++   +R                   
Sbjct: 128 GKTTTTAMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGCSRYLIAEADE----------- 176

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                     S     H    ++ +    TN+  +H++ +             F   LP 
Sbjct: 177 ----------SDASFLH----LQPMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPF 222

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              +++ ADD    E+  +                 I   +           ++  G+  
Sbjct: 223 YGLSVMCADDPVLMELSSQVGRQVVTYGFSDEADYRIEDYQQTGFQGHYT-VVAPNGERI 281

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---R 357
           D L  +PG+    NA  A  +    GI++  +L  L +      RF+ +G   R      
Sbjct: 282 DVLLNVPGKHNALNATAALTVAKEEGIENEAILTALAEFQGAGRRFDQLGQFIRPNGKVM 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIV 415
           +  DY H    + + ++  R     + IV+        + +       ++     D+ I+
Sbjct: 342 LVDDYGHHPTEVNVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ-VDVLIM 400

Query: 416 TDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D     E      D   +   I + G    I   +  +      +++   D+++  G G
Sbjct: 401 LDVYAAGEQAIAGADSRSLCRSIRNLGKVDPILVSDHKQLAEIVDQVIQDGDLILAQGAG 460

Query: 469 H 469
           +
Sbjct: 461 N 461


>gi|324998739|ref|ZP_08119851.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia sp. P1]
          Length = 478

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 86/413 (20%), Positives = 135/413 (32%), Gaps = 45/413 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+A    +       +  + VV    + ++  A+   G+    ++AV GT GK+S  
Sbjct: 76  VVVSTAIRETNPELAAARDQGLQVVH---RAVA-LAALTEGR---RLVAVAGTHGKTSTT 128

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S V    Q +G           +S         +     +    S               
Sbjct: 129 SMVTVALQHTGAD-PSFAIGGDLSVSGSGAHHGSGDVFVVEADESD-------------- 173

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH+D+H   +A + A    F E L   +  +  ADD
Sbjct: 174 ------GSFTAFAPSVAVVTNVEPDHLDHHGD-EATYRAVFERFLERLVPGATLVTCADD 226

Query: 251 AYSK---EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             S+      +RA     R        +   L          +      G++ +    +P
Sbjct: 227 PGSELVAVHAERAGITVRRYGRTATGSQDARLLDFAPDGVGSRTRFRWGGEEHELALGVP 286

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE    NAL A     A+  D A +LE L     V  RFEF G   RG  +Y DYAH   
Sbjct: 287 GEHMALNALGAFLAGTAVDQDPAALLEGLAGFGGVQRRFEFKG-RVRGVAVYDDYAHHPT 345

Query: 368 SLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIMG---KIALDLADIAIVTDDNPR 421
            +   L+  R    +  GR   V          +  +       +L LAD  +V D    
Sbjct: 346 EVAATLRAAREAAPVVQGRRGRVLVAFQPHLYSRTRLFAGEFGASLSLADEVMVLDVYGA 405

Query: 422 SEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            EDPE       I  ++           +  +       +    D ++  G G
Sbjct: 406 REDPEPGVGPALITDQVRLPAERVHRAPSWEKTPAAIAALAADGDTVITMGAG 458


>gi|257483449|ref|ZP_05637490.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011575|gb|EGH91631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 448

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 124/361 (34%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+++++ G  G +      +  
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGKLVLIAGGDG-KGADFSALRA 366

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +A +    A++        D E I   +   +   +       A+  +  +  + D ++
Sbjct: 367 PVA-EHCRAAVL-----LGRDAELIAQALGDAVT-LVRVDTVQAAVEQSARLAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|206976041|ref|ZP_03236951.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus H3081.97]
 gi|217961946|ref|YP_002340516.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH187]
 gi|229141195|ref|ZP_04269734.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST26]
 gi|206745793|gb|EDZ57190.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus H3081.97]
 gi|217067672|gb|ACJ81922.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH187]
 gi|228642236|gb|EEK98528.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST26]
          Length = 433

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 114/386 (29%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLENAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CR 266
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENQAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  +G     +H +                 +D         +       + A + + I 
Sbjct: 221 LYEMGNHFTSLHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKIY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLESIADEIIFTT---FAFDRAISAGELASYAKEESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EML + DV ++ G
Sbjct: 392 VFDNWKEAIDTKVEMLGENDVFIITG 417


>gi|159030200|emb|CAO91092.1| murC [Microcystis aeruginosa PCC 7806]
          Length = 478

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/418 (14%), Positives = 126/418 (30%), Gaps = 53/418 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNT--PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +       +   PI    +    L   A         + +AV GT GK++
Sbjct: 86  VICSTAINDHNKEYQAARDLGYPIFHRSDVLAAL--IADY-------DSIAVAGTHGKTT 136

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL                D  +     +   +  + L          +
Sbjct: 137 TSSLIGYVLLEAGL----------------DPTIIVGGEVDAWEGNARLGQGRFLVAEAD 180

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++Q      +       +     +      
Sbjct: 181 ESDGSLTKH-----APKIGVITNIELDHPDHYQNLSEVIDTFHEFAHQCQILVACL---- 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  + +         L       +   + +      +                +PG
Sbjct: 232 ---DCDTIAEHFRPTISYSLDPEKGADYTVSEIIYEQGMMKASVWEKGSYLGQMEVKIPG 288

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL    +   +G++ A++ + +        RFE     + G     DYAH  + 
Sbjct: 289 QHNISNALAVVAIGRYLGLEFAVIADAIATFAGAKRRFE-HKGEANGITFIDDYAHHPSE 347

Query: 369 LEMILKNIRTITSG----RIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           L   L   +    G    R I +F      R        G  A   AD+ ++TD     E
Sbjct: 348 LLATLAAAKLKVEGKQYQRSIAIFQPHRYSRTTAFLEEFGS-AFSSADVVVLTDIYSAGE 406

Query: 424 ------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
                   +++  ++                 +  +E+L   D+ +  G G+    ++
Sbjct: 407 VNINHVTGQQVAEQVRKHHKNAYYHPELSSLGQFLLEILQPGDLALFLGAGNLN-QVI 463


>gi|134294648|ref|YP_001118383.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
 gi|166222968|sp|A4JB95|MURC_BURVG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134137805|gb|ABO53548.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
          Length = 465

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 80/432 (18%), Positives = 140/432 (32%), Gaps = 58/432 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH      I  GA A+VVS+A    +       +  + +V   R   L+       G   
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARHQRVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R          +  + + A   +   T+
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGL--SADAQVRAENIDARDGRMHFTV 260

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
             EG+     +  LPG   V NAL A  +   +G+    +   L + + V  RF+  G  
Sbjct: 261 IREGRSPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEV 320

Query: 353 SR----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                    +  DY H    +   +   R    GR  +V      R    R         
Sbjct: 321 PSADGGQYTLIDDYGHHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNV 379

Query: 409 LA--DIAIVTD------DNPRSEDPEKIRAEIIH--GIPGFIE--KGNRIEAIRTAIEML 456
           L+  D  ++T+          + + + +   +     +         +  +A+       
Sbjct: 380 LSTVDALVLTEVYAAGEAAIATANGDALSRALRTVGKVDPVFVATVDDVPDALAKV---A 436

Query: 457 NKQDVLVVAGKG 468
              DV++  G G
Sbjct: 437 RNGDVVITMGAG 448


>gi|325688217|gb|EGD30236.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK72]
          Length = 459

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 129/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        +    P++    T   L+   S         I+ +TG++GK++  + + Q
Sbjct: 92  PYDNAMVVRALEKKIPVI----TEVELAYLISE------APIIGITGSNGKTTTTTMIAQ 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                G +    G     +S                      ++     + +E SS  L 
Sbjct: 142 ALTAGGQNGLLSGNIGYPASQV------------------AQTASSKDTLVMELSSFQL- 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++         TNL   H+DYH + + Y  AK  + + +   +   + +  D ++KE
Sbjct: 183 -MGIEDFHPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADDYLVLNFNQD-WAKE 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +         +            V        +T   E         +PG   V NA
Sbjct: 241 MASQTQATVVPFSTTEKVDGAYLEGDV--------LTFRGEAIMQAAEIGVPGSHNVENA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+  + E L     V  R ++VG  +         +     +    K 
Sbjct: 293 LATIAVAKLRGIDNQTIKEVLSAFGGVKHRLQYVGRVNEVAFYNDSKSTN---ILATQKA 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  +   L  + I+     R       RA  + G
Sbjct: 350 LSGFDNSKVILI-AGGLDRGNEFDELVPDLKG-LKKMVILGQSAAR-----VKRAADLAG 402

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +++  +  +A   A       D++++
Sbjct: 403 VS-YLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|293603442|ref|ZP_06685867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
           piechaudii ATCC 43553]
 gi|292818144|gb|EFF77200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Achromobacter
           piechaudii ATCC 43553]
          Length = 510

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 123/386 (31%), Gaps = 49/386 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A     +    +L VTGT+GK++V +  + +   SGLS    G           
Sbjct: 118 RALADLAETQEYRP--RLLTVTGTNGKTTVTALTRDLIDASGLSVVAAGNI--------- 166

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
               +P+ +  A   +  +        +E SS  L+  R   +   A    N+ +DH+D+
Sbjct: 167 ----SPAALT-ALMDALDNDALPQVWVLELSSFQLETTR--SLMADAAVVLNVTQDHLDW 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---------SV 270
           H    AY  AK R+    L     AI+  DD  +  ++        R            +
Sbjct: 220 HGGMDAYAAAKARI----LTMARIAIVNRDDPLTIAMVPTVSALNVRSFGRDMPELVGDM 275

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +        V +  +          +  D   P+    ++   +    L I    ++ 
Sbjct: 276 GLELGQGVAWLVASEPSDFDEPAPPTRRKKDAPEPVRANGRMSRLMPVDALRIRGIHNAL 335

Query: 331 ------------LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                        +        +     E            VDY + S    +       
Sbjct: 336 NALAALQLARCLDLGWGAMLRTLREYAGEPHRAAFVRQIGGVDYINDSKGTNVGATVAAL 395

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G+ +V+   G  + Q   P++  +    A   ++        D  +I   +      
Sbjct: 396 EGLGQPVVLIAGGQGKGQDFSPLIP-VVSRHARAVMLI-----GVDGPEIGRVLASTGVN 449

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I   +   A+R A E+    D +++
Sbjct: 450 CITVDSLHAAVRGAAELAQPGDAVLL 475


>gi|237799288|ref|ZP_04587749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022144|gb|EGI02201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 448

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 120/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        I+A+TG++ KS+V + V  + + +G      G   T +         
Sbjct: 101 ELFARYAKAP---IIAITGSNAKSTVTTLVGDMAKAAGKRVAVGGNLGTPALDL------ 151

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          S  +    +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 152 --------------LSDDIDLYVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYTGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHQAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMPVRDLKVRGAHNQANALAALALGHAVGLPFEAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    +K + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLREHDGVDYYNDSKATNVGAALAAIKGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               +     ++   +       ++ A+++      I       A+  +  +    D ++
Sbjct: 366 APVTEHCRAVVLLGRD------AELIAQVLGDAVPLIRVDTLQAAVERSASLAQGGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|16126785|ref|NP_421349.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter crescentus
           CB15]
 gi|221235565|ref|YP_002518002.1| UDP-N-acetylmuramate--L-alanine ligase [Caulobacter crescentus
           NA1000]
 gi|23821884|sp|Q9A5A6|MURC_CAUCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765989|sp|B8H086|MURC_CAUCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13424109|gb|AAK24517.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter crescentus CB15]
 gi|220964738|gb|ACL96094.1| UDP-N-acetylmuramate--alanine ligase [Caulobacter crescentus
           NA1000]
          Length = 473

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 145/434 (33%), Gaps = 62/434 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH     A  +GA AIV S+A    +       +  + +V   R+   L+      +   
Sbjct: 63  GHD---AAHVEGASAIVYSTAVKADNPEMVAGRDKRLPLV---RRAEMLAELMRLQFS-- 114

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S V  +    GL    +     I+++  + ++     I +   
Sbjct: 115 ----VAVGGTHGKTTTTSMVAALLDAGGLDPTVV-NGGIINAYGTNAKVGEGDWIVVEAD 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +K      TN+  +H+D+     A        
Sbjct: 170 ESDGSFLK--------------------LKSTVAIVTNIDAEHLDHWGDFDAVKKGFQDF 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            + +      A+            +  +       +       +   ++        + +
Sbjct: 210 IQNIPFYGFAAVCTDHPEVQALTSRIENRRLVTYGTNPQAEVRVSNIEMGPEGATFDIIV 269

Query: 294 SVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           S    +         P+ G   V NA  A  +   +G+D+  + + L     V  RF   
Sbjct: 270 SPRAGEAVRYDGLKMPMAGHHNVLNATAAVAVARELGVDAEAIAKGLAGFGGVKRRFTTT 329

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           G  + G R+  DY H    +  +LK  R +  +G++I V      R    R +M + +  
Sbjct: 330 GVAN-GIRVVDDYGHHPVEIAAVLKAARAVTPNGKVIAVV--QPHRFTRLRDLMTEFSSC 386

Query: 409 L--ADIAIVTDDNPRSEDPEKI----RAEIIHGIPGFIEKGNRIE-------AIRTAIE- 454
              AD  IV D     E P  I    R  ++ G+  F   G+R         A+   I  
Sbjct: 387 FNDADTVIVADVYTAGEQP--IPGVDRDALVAGLKKF---GHRRALPLENPTALPRLIAA 441

Query: 455 MLNKQDVLVVAGKG 468
                D++V+ G G
Sbjct: 442 EATSGDLVVLLGAG 455


>gi|296314712|ref|ZP_06864653.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838547|gb|EFH22485.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           polysaccharea ATCC 43768]
          Length = 424

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 126/397 (31%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++ QI +++G     +     +    +
Sbjct: 24  LERVGEVKKRMNLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAVNAEPVSDDTITASFERIETARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD + +       +    +D+          ++   +  + +     I   +   + ++ 
Sbjct: 144 LDAVNVFDCDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPESLLS 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A + G ++L V  +    H  +    + + +   S          P P     Y    A
Sbjct: 203 HAESIGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDGPARNRNALPFPALRGAYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +   +  +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACALTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D      + +I  D  D   +   D PR    + ++ 
Sbjct: 319 RRSLMNLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLDSLQD 375

Query: 431 EI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++  HGI          EA R A     + D +VV G
Sbjct: 376 KLHEHGIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|296121825|ref|YP_003629603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296014165|gb|ADG67404.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 498

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 128/410 (31%), Gaps = 44/410 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A+ IV + A         +  +  I +    + FL         + P  + AVTG++G
Sbjct: 88  RKADLIVANPAVRPDHRLLKLARDGGIPITTEVQLFL--------ERCPAPVAAVTGSNG 139

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+  + + +IC+         G      ++   N       I ++      +      V
Sbjct: 140 KSTTTAMLHRICE------MASGSPGLRRAWLGGN-------IGVSLLDQLPAITSDDLV 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L               TN   +H+D+H     Y +A  +       +   A+
Sbjct: 187 VMELSSFQLYWLNQIEWSPSIAIVTNFSANHLDWHDGLDDYRSA-KQTMFRWQNESDVAV 245

Query: 246 IYADDAYSKEV--MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-- 301
           I  DD    +                     K+    +           + +   +    
Sbjct: 246 INLDDPDVCQWPGPALRLGFQTGSNCSDVTTKYGVFSESEKEGCLPSQILRLPDAEIRLA 305

Query: 302 --FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + GE  + NA+ A      + I   ++   L     +P R EFVG  +      
Sbjct: 306 ASSWLRVKGEHNLQNAMAAIAAASVMDIPMEVIETALRSYQALPHRLEFVGACAGREFYN 365

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A T  S  + LK          +++   G D+       M K+      + ++    
Sbjct: 366 DSLATTPESAILGLKAFSQ-----PVILLAGGYDKGVDL-SSMSKVISKACRVVVL---- 415

Query: 420 PRSEDPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +    I  +I       G P  I   +  +A   A E     +V+++
Sbjct: 416 -MGQTAPAIHEQIEQYRPSGGGPEVIFASSPHDAFTKAWENSQPGEVMLL 464


>gi|322391625|ref|ZP_08065094.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
 gi|321145708|gb|EFX41100.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
          Length = 450

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 123/361 (34%), Gaps = 43/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +       I+ +TG++GK++  + + Q+   +G +    G     +S       T
Sbjct: 104 ELAYLISEAP---IVGITGSNGKTTTTTMIGQVLTAAGQNGLLSGNIGYPASHVAQ---T 157

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 L                +E SS  L    ++         TNL   HIDYH + 
Sbjct: 158 ATDKDTL---------------VMELSSFQL--MGIESFHPEIAVITNLMPTHIDYHGSF 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK  + + +   +   + +  D  +KE+ ++   +     ++           + 
Sbjct: 201 EAYVAAKWNIQKNMTAADYLVLNFNQD-LAKELAEKTQASVVPFSTLEKVDGAYLENGLL 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                       E         +PG   V NAL    +    G+D+  + E L     V 
Sbjct: 260 Y--------FRGEAVMAADEIGVPGSHNVENALATIAVAKIRGVDNETIKETLSAFGGVK 311

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R ++    +         +     +    K +    + ++I++   G DR      ++ 
Sbjct: 312 HRLQYADEINGVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFDELVP 367

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I   L  + I+       +  E+++         +++  +  +A R A  +    D+++
Sbjct: 368 DIKG-LKKMVIL------GQSAERVKRAADKAGVEYVDATDIADATRKAYHLAGTGDIVL 420

Query: 464 V 464
           +
Sbjct: 421 L 421


>gi|313813209|gb|EFS50923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL025PA1]
 gi|315107076|gb|EFT79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL030PA1]
          Length = 498

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 81/303 (26%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 175 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 235 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVE 294

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 295 QRATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 355 HQAGGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 409 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 463 VVA 465
           ++A
Sbjct: 463 LMA 465


>gi|297539591|ref|YP_003675360.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
 gi|297258938|gb|ADI30783.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
          Length = 472

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 139/411 (33%), Gaps = 57/411 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
              +  A      P++     R   L+       G      +AV GT GK++  S +  I
Sbjct: 77  ENPEVKAARAKKIPVV----PRALMLAELMRFRQG------IAVAGTHGKTTTTSLIASI 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G+    +     + +   + +L T   I      S  S                  
Sbjct: 127 LAEAGMDPTFV-IGGKLEAANANAKLGTGEYIVAEADESDASFLH--------------- 170

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +  +    TN+ +DH+D ++       +    F + LP    A++  DDA  +E+
Sbjct: 171 -----LTPVMAVVTNIDQDHMDTYEHSFDKLKSAFVEFLQQLPFWGMAVVCIDDANIREI 225

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQVY 313
           + R       +     +   +    V A   K   T         +FD    LPG   V 
Sbjct: 226 LPRVT--KPVMTYGFSEDARVRAINVRADDGKMHFTAQRINGVVTEFDVTLNLPGNHYVL 283

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVDYAHTSNSL 369
           NAL A  +   + +  A +++ L++   V  RFE  G  +        +  DY H    +
Sbjct: 284 NALAAIAIASELNVPDAAIIKALKEFKGVGRRFERYGEIAVKGGGAFTLIDDYGHHPVEM 343

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSE---- 423
           + ++   R     R  +V      R    R         L+  D  ++T+     E    
Sbjct: 344 QAVIAAARAAFPNRR-LVMAFQPHRYTRTRDCFEDFVRVLSSTDAVLLTEVYSAGEASIV 402

Query: 424 --DPEKIRAEIIHGI---PGFIEKGN-RIEAIRTAIEMLNKQDVLVVAGKG 468
             D   +   I  G    P F+E  +   EAI   + M    DV++V G G
Sbjct: 403 AADTRSLIRSIRIGGKVEPLFVETTDELPEAI---LNMAQADDVVIVMGAG 450


>gi|330895229|gb|EGH27567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 448

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 121/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T +         
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPALDLLS---- 153

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L                +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 154 --DEVEL--------------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYNGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +P  +       A+  + ++  + D ++
Sbjct: 366 APVAKHCRAAVL-----LGRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLALRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|168492240|ref|ZP_02716383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573524|gb|EDT94052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
          Length = 450

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 127/412 (30%), Gaps = 54/412 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTR--KFLS---------LFASRLYGK 112
           + +G + I       L D    +    P +   N    K L+           A  +   
Sbjct: 53  LEEGIKVITGGHPLELLDEEFALMVKNPGIPYSNPMIEKALAKRIPVLTEVELAYLISEA 112

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+ +TG++GK++  + + ++   +G      G     +S                 
Sbjct: 113 P---IIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYPASQV--------------- 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                 +     + +E SS  L    +          TNL   HIDYH +   Y  AK  
Sbjct: 155 ---AQIASDKDTLVMELSSFQL--MGVQEFHPEIAVITNLMPTHIDYHGSFSEYVAAKWN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +  ++   +   + +  D       K               G         A     Q+ 
Sbjct: 210 IQNKMTAADFLVLNFNQDLVKDLASKTEATVVPFSTLEKVDG---------AYLEDGQLY 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E         +PG   V NAL    +    G+D+  + E L     V  R +FV   
Sbjct: 261 FRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDI 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                     +    + +  L           +V+   G DR      ++  I   L  +
Sbjct: 321 KGVKFYNDSKSTNILATQKALSGF----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKM 375

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            I+       +  E+++         ++E  +  +A R A E+  + DV+++
Sbjct: 376 VIL------GQSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|302383799|ref|YP_003819622.1| UDP-N-acetylmuramate/alanine ligase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194427|gb|ADL01999.1| UDP-N-acetylmuramate/alanine ligase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 484

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 99/292 (33%), Gaps = 31/292 (10%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +K      TN+  +H+D++    A   A    F E +P    A +  D    + ++ +  
Sbjct: 179 LKSTVAIVTNIDPEHLDHYGDFDAVRKA-FCDFVENIPFYGFAAVCLDHPEVQRLVAQID 237

Query: 262 NAGCRVLSVGYQGKFIH---------LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           N       +  Q               +    I  +    +    +  D   P+ G   V
Sbjct: 238 NRRIVTYGMNPQAMVRADKVEMSPDGARFDVLIQGRGAAALEDPVRIPDLHLPMAGWHNV 297

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NAL A  +   + +    +   L     V  RF   G    G RI  DY H    +  +
Sbjct: 298 ANALAAIAVARELDVSDDAIRAGLASFAGVKRRFTTTGV-VNGVRIVDDYGHHPVEIAAV 356

Query: 373 LKNIRTITS-----GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP 425
           LK  R +       GR+I V      R    R +M + +     AD  IV D     E P
Sbjct: 357 LKAARQVAHTAEGGGRVIAVV--QPHRFTRLRDLMDEFSTSFSDADSVIVADVYAAGEAP 414

Query: 426 EKIRA--EIIHGIPGFIEKGNRIEAIRTAI-------EMLNKQDVLVVAGKG 468
            +      ++ GI  +     R+ A+  A        E     DV+V+ G G
Sbjct: 415 IEGVDKQALVDGIRRYGHL--RVSALENAAVLPRVIAEEAKAGDVVVLLGAG 464


>gi|229105096|ref|ZP_04235747.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-28]
 gi|228678277|gb|EEL32503.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-28]
          Length = 433

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 93/309 (30%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKINFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGD 178

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                  +     +            DD   + + K A      +  +G     +H +  
Sbjct: 179 TLGEIAYEKAGIIK--SGVPVITGVQDDEALQVIQKVAKENHANLYELGKHFTALHKQSN 236

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKL 339
                          +D         +    +  + A + +   +        +      
Sbjct: 237 EDGERFDFACPFASFEDVRISMKGVHQVGNASLALMAIMYLKTYVSFLIEEEEIRAGLHE 296

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGK 398
               GRFE + +      I +D AH    +E ++K +      + I+V F   GD+    
Sbjct: 297 AYWIGRFEKLKS---NPDIIIDGAHNPEGIESLVKTVEAHYKDKNIIVLFTALGDKQLHN 353

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              M      +AD  I T     R+   +K+ A         I   +  EAI T +EM+ 
Sbjct: 354 ---MVGQLETIADEIIFTTFAFDRAISADKLAAHSQK--ESKIVFEDWKEAIDTKVEMIG 408

Query: 458 KQDVLVVAG 466
             DV ++ G
Sbjct: 409 GNDVFIITG 417


>gi|309812672|ref|ZP_07706416.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
 gi|308433367|gb|EFP57255.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
          Length = 479

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 89/274 (32%), Gaps = 11/274 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+  DH+D++ T      A       + P+        D+       +R   
Sbjct: 187 HPQVAIVTNIKDDHLDFYGTSANLARAYETFAATIAPQGLLVACADDEGSLALAQRRRAA 246

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GL 321
               +         + +          ++++       D    +PG   + NA      L
Sbjct: 247 GARVLTYGRDTDADVRIVAESGEGFDWRMSLRDGDAVHDVALHVPGAHNLLNAAGVYTAL 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+  A V   L        RFE  G  + G R+  DYAH    L+ +++    +  
Sbjct: 307 VHGFGLAPADVARGLGAFRGTSRRFEPRG-EAGGVRVVDDYAHNPGKLDALVRTAAGLKD 365

Query: 382 GRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDP------EKIRAEIIH 434
              ++V        + +    G   ALD AD A V D     E P        I   +  
Sbjct: 366 DGELIVIFQPHLYSRTQHAATGLAAALDGADHAFVLDVYGAREQPVAGVSGALITDRMTS 425

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           G   F    +  +A+   +++    D++V  G G
Sbjct: 426 GRGEFTPTAD--DALARVLDVARPGDLVVTVGAG 457


>gi|302877580|ref|YP_003846144.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
 gi|302580369|gb|ADL54380.1| UDP-N-acetylmuramate/alanine ligase [Gallionella capsiferriformans
           ES-2]
          Length = 466

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 134/419 (31%), Gaps = 50/419 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS+A S  +          I VV      L+       G      +AV GT GK+
Sbjct: 65  ADVVVVSTAVSQDNPEVVAARARHIPVVPRAM-MLAELMRLRQG------IAVAGTHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S    +  R G     +     ++S   + +L T   I +    S  S         
Sbjct: 118 TTTSLTASVLARGGFDPTFV-IGGKLNSSGTNAKLGTGEFIVVEADESDASFLY------ 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         ++ I    TN+  DH++ +    A        F E LP    A++ 
Sbjct: 171 --------------LQPILAVVTNIDEDHMETYGHDFAKLKQAFIDFIEHLPFYGRAMVC 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFP 305
            DDA  +E++ R                     +                  +D      
Sbjct: 217 VDDANIREILPRVTKPVTTYGFSEDAQIRAINVRHEGGKMCFTAQCRQNGTPRDLVITLN 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GRIYVD 361
           LPG   V NAL A  + + IG+    ++  L++   V  RF+  G  +        +  D
Sbjct: 277 LPGRHNVLNALAAIAIALEIGVADDAIIAALDEFEGVGRRFQRYGEIALPEGGRFTLIDD 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDN 419
           Y H    +   L  +R    GR  +V      R    R +       L   D  ++ +  
Sbjct: 337 YGHHPVEMAATLAAVRGAFPGRR-LVLAFQPHRYTRTRDLFEDFVKILCGVDALLLAEVY 395

Query: 420 PRSED---PEKIRAEI----IHGIPGFI---EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              E        RA +    + G    I      +  ++I   ++     DV+V  G G
Sbjct: 396 AAGETRLVAADGRAMMHALRLAGQSEAIFVEHIADMPQSI---MQWARDGDVVVTMGAG 451


>gi|297626712|ref|YP_003688475.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922477|emb|CBL57050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 494

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 19/168 (11%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                  V NAL AA L  + G+    V + L  LH+   R E V  +     +    A 
Sbjct: 307 HPFAPHNVENALAAAALTRSFGVPPRAVAQGLRDLHLGGHRIETVAQSDGITWVDDSKAT 366

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             N+    ++          IV    G  +      ++ + A  L  + ++        D
Sbjct: 367 NPNAANSSMRAYE------HIVWIAGGQTKGTSFDELLTRHAKRLRGVVLL------GVD 414

Query: 425 PEKIRAEIIHGIPGF-IEKGN------RIEAIRTAIEMLNKQDVLVVA 465
            + I   +    P   +   +        +A++ A  M    D +++A
Sbjct: 415 RQVIADALRRHAPRVPVVVLDGKQTGVMDQAVQEASRMARPGDTVLLA 462


>gi|317130029|ref|YP_004096311.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474977|gb|ADU31580.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 526

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 115/361 (31%), Gaps = 18/361 (4%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
            R+       ++ +TG+ GK+SV  F+  +                 +         T  
Sbjct: 171 QRIKSAQHLKVIGITGSFGKTSVKHFMHAVLSA------------KFNVLMTPESFNTKL 218

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            +             V    + A   G  +   + +    G  T +G  H++  ++    
Sbjct: 219 GVTRTIREKLKPYHEVFIAEMGAKQGGDVEEICELVDQQYGVLTAIGEQHLETFKSLDNI 278

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
              K          ++   +   D  +                +      I  K +    
Sbjct: 279 KKTK--YEIIETLPDNGVGVLNKDDENIMSYAPYQKRDVIYYGIDAPDVDIRAKDISYSS 336

Query: 287 NKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                T+ ++  +   F   L G+  VYN L A  + + +G+  + +++ +  L  VP R
Sbjct: 337 KGMDFTVVLKNGETQTFRTKLLGKHNVYNILAAIAIGLQLGMKLSEMVKPIRSLDAVPHR 396

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV--VFGCGGDRDQGKRPIMG 403
            E   +      I   +       +M +  + ++   R++V       G+++        
Sbjct: 397 LELKRSTGNITIIDDSFNSNPVGSKMAVDVLGSMEGYRMLVTPGMIELGEKEYELNKEWA 456

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             A +  D  I+     +++  +    E  +         N  +AI+   ++  ++ +++
Sbjct: 457 TYAANKCDYIILVGKK-QTKPLQDGLKEANYPEAQLYIAENLQDAIQQMHKVAKEKTIVL 515

Query: 464 V 464
           +
Sbjct: 516 L 516


>gi|163732131|ref|ZP_02139577.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
 gi|161394429|gb|EDQ18752.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
          Length = 468

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 132/417 (31%), Gaps = 53/417 (12%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE +V+SSA      +  A   S  PI+        L            ++ +AV GT G
Sbjct: 71  AEVVVISSAIKPGNAELDAARASGLPIVRRAEMLAELMRL---------KSNIAVAGTHG 121

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  +    G     +     I ++  + R                       +
Sbjct: 122 KTTTTTMVATLLDA-GEFDPTVVNGGIIHAYGSNARKGEGE-----------------WM 163

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA       +RL          TN+  +H+++              F   +P    A+
Sbjct: 164 VVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGDFDTLRQ-GFLDFVSNIPFYGVAV 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--DFL 303
              D    + ++ +  +          Q     +    A                  D  
Sbjct: 220 CCTDHPEVQALVGKITDRRVITYGFNAQADVRAVNLRYASGVAHFDVALQAEGIVIEDCS 279

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG+  V NAL A  +   +G+ + ++   L     V  RF  VG    G  I  DY 
Sbjct: 280 LPMPGDHNVSNALSAIAVARHLGMKAEVIKTALAAFGGVNRRFTRVG-EIDGVTIIDDYG 338

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    +  +LK  R  T GR+I V      R      +          AD+  + +    
Sbjct: 339 HHPVEIAAVLKAARQATEGRVIAV--HQPHRYSRLSSLFDDFCACFNDADVVGIAEVYAA 396

Query: 422 SED--PEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ED  P   R +++ G+           + + +     R   E     D++V  G G
Sbjct: 397 GEDPIPGAGRDDLVAGLIRHGHRHARAVVGEDDLE---RLVREQTRPGDMVVCLGAG 450


>gi|152980186|ref|YP_001354704.1| UDP-N-acetylmuramate--L-alanine ligase [Janthinobacterium sp.
           Marseille]
 gi|166224696|sp|A6T2F7|MURC_JANMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151280263|gb|ABR88673.1| UDP-N-acetylmuramate--alanine ligase [Janthinobacterium sp.
           Marseille]
          Length = 465

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 133/438 (30%), Gaps = 65/438 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH    + I + A+AIV S+A    +          I +V   R   L+       G   
Sbjct: 56  GH--AAENIEK-ADAIVTSTAVKEDNPEVIAAREKHIPIVP--RAVMLAELMRLRRG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    ++S   + +L T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GLLNSAGANAKLGTGEFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH++ +             
Sbjct: 163 ESDASFLN--------------------LSPVIEVITNIDADHMETYGHDFEKLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DDA  +E+M R               +   +       +     +
Sbjct: 203 FTQRLPFYGVAVLCIDDATVREIMPRISKLITTYGFHED-AQVRAIDAKAIDGHMHFTVL 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                        PG   V NA  A  +   +G+      + L + + V  RF   G  S
Sbjct: 262 QEGYAPMQVSLNQPGMHNVQNACAAIAIARELGVADHATQKALTEFNGVGRRFTRYGEIS 321

Query: 354 RG---------GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
                        +  DY H        +   R    GR  +V      R    R +   
Sbjct: 322 LPAVNDKPAGTFALVDDYGHHPVETAATIAAARGAYPGRR-LVLAFQPHRYTRTRDLFED 380

Query: 405 IALDLA--DIAIVTDDNPRSEDPEKIRAE----------IIHGIPGFIE--KGNRIEAIR 450
               L+  D+ ++ +     E P  I A           +   +         +    I 
Sbjct: 381 FVKVLSTTDMLVLAEVYAAGEQP--IVAADGRTLAHALRVAGKVDPVFVEKIADMPATI- 437

Query: 451 TAIEMLNKQDVLVVAGKG 468
             + ++   DV++  G G
Sbjct: 438 --MNIIKDGDVVITMGAG 453


>gi|148244846|ref|YP_001219540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326673|dbj|BAF61816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 432

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 125/394 (31%), Gaps = 50/394 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           + +S   +  +          I +V +         SR        ++ +TG++GKS+V 
Sbjct: 65  VFISPGIAQSETIVGWAMKKNIPIVSDI-----ELFSRFAKAP---VIGITGSNGKSTVT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + Q+   SG+     G     +    + ++                     +  +E S
Sbjct: 117 KLLTQMIADSGMLVAIGGNIGIPALDCLNEKI--------------------EYYVLELS 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ LD      + LI G   N+  DH+D + + + Y ++K+ L++          +   D
Sbjct: 157 SYQLDYS--YHLNLITGVVLNITPDHLDRYSSFEYYIHSKLSLYQYCQY-----SVVNLD 209

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                        G  +         +    +C +       +SV+              
Sbjct: 210 EPLIPKQTNVKYFGINIPKRANDFGTVTCHNICYLLKGNNTLMSVDEVQLIGEHNT---- 265

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L   I +  + +++ ++    +  R E+V             A       
Sbjct: 266 --KNILAALALGDQIKLPISSMIQSIKNFKALEHRLEWVIKKQNIDYYNDSKATN---AI 320

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  I+T+      +V   GG   +    ++ K         ++   + R     +   
Sbjct: 321 STIIAIQTLMYKHQNIVLILGGIAKKEDYTLLFKFINKGITGVVLIGQSTR-----QFLQ 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           EI      +       EA+  A  M++   V+++
Sbjct: 376 EINTNSIIYANTNTMQEAVNIARSMISNG-VILL 408


>gi|213966174|ref|ZP_03394360.1| FolC bifunctional protein [Corynebacterium amycolatum SK46]
 gi|213951189|gb|EEB62585.1| FolC bifunctional protein [Corynebacterium amycolatum SK46]
          Length = 572

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V +      +++D AH  +    +   +       R+I V    G++D   R +
Sbjct: 425 PGRLERVRSTPT---VFIDAAHNPHGARALRTALSAEFDFRRVIGVLSVLGEKDA--RGL 479

Query: 402 MGKIALDLADIAIVT-DDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + ++     +  ++T + +PR    +D   +  EI  G            A+  A+ +  
Sbjct: 480 LVEL-EPYFEEVVITQNTSPRALHYDDLADLAEEIF-GEERVHRVPTLPSAVELAVALAE 537

Query: 458 KQDV---------LVVAG 466
           + D          ++V G
Sbjct: 538 ETDTGDGIVSGSGVIVTG 555


>gi|171913124|ref|ZP_02928594.1| UDP-N-acetylmuramate--alanine ligase [Verrucomicrobium spinosum DSM
           4136]
          Length = 770

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 51/418 (12%)

Query: 67  GAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA+ ++ SSA       + A  R   P++      + L+   +R +G      + V GT 
Sbjct: 74  GADMVIYSSAVKPGNPAYEAAYRHGIPLVRRA---EALAAIMARKHG------VVVAGTH 124

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++ +S    + +  G                  +         L              
Sbjct: 125 GKTTTSSMAAHVLRVGGAK---------------PSHYVGAEIPILGSNAH-----WDDA 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +  +        L   +       N+  +H+DY++          +L E+       +
Sbjct: 165 GELFVAEGDESDGTLVKFEPRHAIILNIEAEHLDYYEDLNEIKLVFRQLLEK---TSGYS 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +  A+D  + E+ +   N          +        +     + +  +  +G+    + 
Sbjct: 222 VYCAEDPVATELCEGRKNGISYGW---SRDHNFSANILELRPAQTRYEVFQKGELLGEVL 278

Query: 305 -PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V N+L A  L +++G+  + + + LE       RFE    +    +I  DY 
Sbjct: 279 LGIPGRHNVLNSLAAISLAVSVGVPFSSIKQALESFRGARRRFEV-KYSGSQYQIIDDYG 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           H    ++  L   + +   RI+ +F      R Q  +   G  A +  D+  VTD    S
Sbjct: 338 HHPTEIKATLATAKALNPKRIVCLFQPHRYSRTQLLKQEFGG-AFNDVDVLCVTDVYAAS 396

Query: 423 EDP------EKIRAEIIHGIPGFIEKGNRI--EAIRTAIEMLNKQDVLVVAGKG--HE 470
           E P      E I  E+    PG           A       L   D+L+  G G  HE
Sbjct: 397 EKPLPGVSGETILEEVKLQAPGVECHSTPKLLNARDLIGSKLRPGDLLITLGAGNVHE 454


>gi|170718784|ref|YP_001783967.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 2336]
 gi|189028994|sp|B0US68|MURC_HAES2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168826913|gb|ACA32284.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus somnus 2336]
          Length = 476

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 137/421 (32%), Gaps = 54/421 (12%)

Query: 67  GAEAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +VVSSA    +           P++      + L+      +G      +A+ GT 
Sbjct: 77  GASVVVVSSAIKGDNIEVITAHEKRIPVIQRA---QMLAEIMRFRHG------IAIAGTH 127

Query: 125 GKSSVASFVQQICQRSG-LSSFQIGPT---STISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  + V  I  ++G   +F  G     +  +++   +R                   
Sbjct: 128 GKTTTTAMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGCSRYLIAEADE----------- 176

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                     S     H    ++ +    TN+  +H++ +             F   LP 
Sbjct: 177 ----------SDASFLH----LQPMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPF 222

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              +++ ADD    E+  +                 I   +           ++  G+  
Sbjct: 223 YGLSVMCADDPVLMELSSQVGRQVVTYGFSDEADYRIEDYQQTGFQGHYT-VVAPNGERI 281

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---R 357
           D L  +PG+    NA  A  +    GI++  +L  L +      RF+ +G   R      
Sbjct: 282 DVLLNVPGKHNALNATAALTVAKEEGIENEAILTALAEFQGAGRRFDQLGQFIRPNGKVM 341

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIV 415
           +  DY H    + + ++  R     + IV+        + +       ++     D+ I+
Sbjct: 342 LVDDYGHHPTEVNVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ-VDVLIM 400

Query: 416 TDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D     E      D   +   I + G    I   +  +      +++   D+++  G G
Sbjct: 401 LDVYAAGEQAIAGADSRSLCRSIRNLGKVDPILVSDHKQLAEIVDQVIQDGDLILAQGAG 460

Query: 469 H 469
           +
Sbjct: 461 N 461


>gi|299144101|ref|ZP_07037181.1| UDP-N-acetylmuramate--alanine ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518586|gb|EFI42325.1| UDP-N-acetylmuramate--alanine ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 465

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 120/413 (29%), Gaps = 43/413 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G + +V + A ++++          I ++ +   FL               +A++GT G
Sbjct: 73  RGVDLVVYTDAINIENEELKAAIKLKIDII-DRASFLGALMKNYD-----TSIAISGTHG 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V +I +                       L +   I L   L  ++       
Sbjct: 127 KTTTTSMVTEIIK----------------------NLNSNPTILLGGQLDDINGNVKIGD 164

Query: 186 SVEASSHGLDQH-RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                +   +    +           N+  DH+DY    +       + F   L      
Sbjct: 165 KKLFLTEACEYKANVLKYFPTTAVVLNIDEDHLDYFDNIEHIIKT-FKGFVNNLNSNDKL 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  DD  SK ++           +                          E    +   
Sbjct: 224 ILNLDDENSKMLLNDKKENVITFSTKSPANYNAKNITYSLDGYPSYDLYYNEKFIGNVEL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   V N+L A    +  G+     +  ++    V  R E+ G       I  DYAH
Sbjct: 284 SIMGNHNVSNSLAAIAASVENGVSFKDAINGIKIYKGVHRRLEYKG-KYNDAIIEDDYAH 342

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---LADIAIVTDDNPR 421
               ++  L  ++    G +  +F         +  ++          AD+ I+TD    
Sbjct: 343 HPTEIKASLNALKNSCKGSLYCIFQP---HTFTRTKLLLDSFSKSFNNADVVIITDIYAA 399

Query: 422 SE-DPEKI-----RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E D   I        I           N  +      + L + D+ V  G G
Sbjct: 400 REKDYGDIHSKTLCDAINSNGGNAFYLKNFSDVCEYLKKNLKENDMAVTMGAG 452


>gi|289597221|ref|YP_003483917.1| FolC bifunctional protein [Aciduliprofundum boonei T469]
 gi|289535008|gb|ADD09355.1| FolC bifunctional protein [Aciduliprofundum boonei T469]
          Length = 422

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 98/299 (32%), Gaps = 11/299 (3%)

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +NR  T   +    A  Y S   V    +E    G    RLD   ++    T++    +D
Sbjct: 110 ENRNPTFFEVSTMLAFEYFSYMNVDFAVLEVGLGG----RLDATNIVMPEITSIVTIDLD 165

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           +  T       +    E+    +    +   +   + + +    A  R          + 
Sbjct: 166 H--THILGDTIRDIAREKAGIIKPNVPVVIGENKKEAIEEIKRIAELRNAPYHNIWDEME 223

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            + V    N  +         +    PLPG+ Q+ N LVA  +   +  + ++    +E 
Sbjct: 224 FEDVHIDLNGLRFKAHTPISTYTIETPLPGKHQITNMLVAIRIAELLQENYSISHSDIED 283

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                   +      R   +  D AH  ++   ++  IR +       +F    D++   
Sbjct: 284 GIKNIKWKDRFQVKRRRPLLIFDSAHNPSAARALVSTIRDVGIEEPTFLFSILSDKNID- 342

Query: 399 RPIMGKIALDLADIAIVTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                K    ++   IVT+ +   R  + E I           I   N  +A++ A+E 
Sbjct: 343 --EFLKEISKVSKKIIVTEIDYERRRTELEDIVEHAKKYFSEVIPIKNPCDALKYAMEN 399


>gi|237747018|ref|ZP_04577498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
 gi|229378369|gb|EEO28460.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
          Length = 498

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 135/403 (33%), Gaps = 41/403 (10%)

Query: 79  LQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            +  +     + P+   ++   + L         +   N++AVTGT+GK++V S    +C
Sbjct: 84  KEILAFAKEHDVPVWSEIEMFAQALKGLEKERQYRP--NVIAVTGTNGKTTVTSLTGHMC 141

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           +R+G +    G               +P+ + +   +     Q      +E SS  L   
Sbjct: 142 RRAGKTVRLAGNI-------------SPAALDVLLDVIR-KDQLPEIWVLELSSFQLFT- 186

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++    +  NL +DH+D+H + +AY  AK R+F E   +                 
Sbjct: 187 -TYSLEADTATVLNLTQDHLDWHGSMEAYGAAKERIFGEKTVRVLNRGDETVMQMRTSQA 245

Query: 258 KRAHNAGCRVLSVGYQGKF--IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
                        G  G      ++ +  +  +++  +    K+               A
Sbjct: 246 PVVSFGTDEPSEPGSYGLHLDRDIEWLSVMSPREEEALRKNRKNAVQQEYRIQNLMPAGA 305

Query: 316 L------------VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           L             A  LC AIG+  A +L+ L +    P R E V        I     
Sbjct: 306 LRIRGRHNASNALAALALCRAIGLPFAPLLQALREYPGEPHRVELVAIVKDVAYIDDSKG 365

Query: 364 HTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
               +    +K +    +   R I++   G  ++Q   P+   +        ++      
Sbjct: 366 TNVGATVAAVKGLGESEAREERRIILIAGGLGKEQDFSPL-SHVVSRYVKAVLLI----- 419

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +D   I   +       I   +  +A+    E+  K D++++
Sbjct: 420 GKDAHLIHDALSSAGVEQIYCDSLEQAVLRGSEIARKNDIVLL 462


>gi|188589349|ref|YP_001919591.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum E3
           str. Alaska E43]
 gi|229486481|sp|B2UXS3|MURC_CLOBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188499630|gb|ACD52766.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 460

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 16/282 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+DY++            F +L+P +   I Y  D+  KE++ +A  
Sbjct: 178 FPYVGVILNIDADHLDYYKDIDEIT-ETFGQFADLIPNDGYLIGYIGDSRVKEILSKAKC 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                          ++                  K FD     PGE  + NAL +  + 
Sbjct: 237 NTLSYGFENADVTARNIT-FNEKGCASFDVYKHNDKLFDLTLSNPGEHNILNALSSICVS 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   ++   ++  L +      RFE+ G    G  +  DYAH    ++  L   + I   
Sbjct: 296 LIFDVNYDDIICGLSECKGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHN 354

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHG 435
           +   VF      R +           D AD  ++ D     E          +   +   
Sbjct: 355 KTFCVFQPHTYTRTKTLFDEFTDAFFD-ADEVVLMDIYAAREKDTGLVSSNDLGVALRAK 413

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-----ETV 472
                   +  EA+          D+L+  G G      E  
Sbjct: 414 GVKCTNVHSHDEALEYLKNSAKPNDLLLTVGAGDVVIVGEKY 455


>gi|146291592|ref|YP_001182016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           putrefaciens CN-32]
 gi|145563282|gb|ABP74217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           putrefaciens CN-32]
          Length = 439

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 127/397 (31%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +L         +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + +         +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGVP-------------ALDLLSENAEI-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDA 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                          A       G     I+  +   +                    L 
Sbjct: 220 LTIPTEPMNQNSFGLAPPEGDEWGICDSKIYHGRSEIMPIT--------------EVSLI 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+G+D  ++ +       +  R E VG       +    A    
Sbjct: 266 GSHNHANLLAAMALVYAVGVDKQVIAKVARTFTGLSHRCEVVGIKGGVTYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +         ++   GGD   GK      +   L+    VT       D  K
Sbjct: 326 ATVAALDGLSDHLGD---IILIAGGD---GKGADFSPLVEPLSK---VTHLITLGRDGNK 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A +  G    I+  +   A+  A  +    D++++
Sbjct: 377 IAA-LKEG---AIKVDSMAAAVAKAAALATSGDIVLL 409


>gi|332675173|gb|AEE71989.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes 266]
          Length = 493

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 81/303 (26%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 170 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 229

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 230 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVE 289

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 290 QRATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 349

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 350 HQAGGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 404 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 457

Query: 463 VVA 465
           ++A
Sbjct: 458 LMA 460


>gi|253681289|ref|ZP_04862087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
 gi|253562527|gb|EES91978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
          Length = 458

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 110/360 (30%), Gaps = 47/360 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V  + +  G  ++  G          +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYNMLKSQGYKTWVGGNIGNPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           V +E SS  L         +     TNL  +H+D H+  + Y N
Sbjct: 162 ---------RMTKEDKVVLELSSFQL---MTINEDINCALVTNLSPNHLDVHKDMEEYVN 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+     +   +   D+  + +++  A     +           + K        
Sbjct: 210 AKKNIFKYQNENDLLVLNR-DNKITNDLVNEAKGRVKQFSIKEEINNGAYFKNNKLFILD 268

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           ++V    E K                 L+AA   +   ++  ++ +       V  R EF
Sbjct: 269 KEVCALEEVK--------LKGMHNVENLLAAFCLVHEDVNVDIMRKVATTFTGVEHRCEF 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +       L+        + +++   G D+     P+    A +
Sbjct: 321 VRELDGVKYYNDSIASSPTRTIAGLRAFE-----KPVILIAGGYDKHIPFEPL----AEE 371

Query: 409 LADIA---IVTDDNPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLNKQDVL 462
             D     I+T      E  +K   ++I      I         EAI  A E+    D++
Sbjct: 372 GYDKIKALILT--GVTKEKIKKAFDDVIKNKQYKIPIYMLEGFEEAIYKAKEISKMGDIV 429


>gi|188589067|ref|YP_001921653.1| folylpolyglutamate synthase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499348|gb|ACD52484.1| folylpolyglutamate synthase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 437

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 133/392 (33%), Gaps = 47/392 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ------------- 158
           +    ++ V GT+GK S  S +  I    G                +             
Sbjct: 38  QKKLKLIHVAGTNGKGSTTSMITSILIGMGYKVGMYTSPFLEEFEERIQINGENIPKNKL 97

Query: 159 ------------------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                                 T    +  A  L Y  ++ V +  +E    G +    +
Sbjct: 98  TELINTVKKAVDKVIEEGYEHPTEFEILTTAMYLYYY-NEKVDYAVIEVG-LGGELDSTN 155

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            I  I    T++  DH++      + +   M+    +  +    +    +   + ++++A
Sbjct: 156 VITPIVSVITSISFDHMNILGN--SLYEIAMQKAGIIKEEIPVVVYPQTNEAMRAIIEKA 213

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA-- 318
                +V  +          K       Q+V I    + ++   PL GE Q+ N  VA  
Sbjct: 214 KITNSKVCEINSNSGTFIEVKHE-EKFYQKVKIDTGKELYNANLPLMGEHQILNLSVALT 272

Query: 319 ---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                      I +  ++E+  +     GR E +   ++   I +D AH    ++M+  N
Sbjct: 273 TIEILCEREGLILNKKLIENSIESVKWKGRLEVL---NKEPLIVMDGAHNIEGIKMLKSN 329

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIH 434
           ++     +   VF   G     +   M K    +A    V T  + R+E   +++  I+ 
Sbjct: 330 VKKYF--KYNNVFLLLGILADKQVEEMIKEITPMAYKVYVLTPHSDRAELNTELKDHILK 387

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                I   +  +A++T +     +D+++++G
Sbjct: 388 YNKNTIALDSYEDAMKTVLSEATSEDLILISG 419


>gi|126649728|ref|ZP_01721964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
 gi|126593447|gb|EAZ87392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
          Length = 449

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/366 (16%), Positives = 111/366 (30%), Gaps = 52/366 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + +  +      +    G   T++         
Sbjct: 104 ELAYLISDAP---FIGITGSNGKTTTTTLIFDMLNNGSKNPLIAGNIGTVACGVAKEANE 160

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               +                   E SS  L        K      TNL   H+DYH T 
Sbjct: 161 DDIIVT------------------ELSSFQL--MGTKTFKPKISILTNLYDAHLDYHGTF 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y  AK  +       +      AD         +++       S G     I      
Sbjct: 201 DNYAEAKFAVTRNQDESDYFIY-NADQPIVVGYAAQSNAQKIPFSSNGRTVNGISAD--- 256

Query: 284 AIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                 + TI  +G+ +     +  PG+  + N L A   CI +G D   + E L     
Sbjct: 257 ------ETTIYWQGEPYMDRANIALPGKHNLENILAAVAACILVGCDKGKMEEVLATFGG 310

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--- 398
           V  R +FV   +         A    + +  L   +       +++   G DR       
Sbjct: 311 VRHRTQFVREWNGRKIYNDSKATNCLATKSALDAFQA-----PVILLAGGLDRGHSFEEL 365

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           R  M  +      +    +   R  +  K       G+   +   N  +A+  A  M  +
Sbjct: 366 RSSMNHVKG----VVAFGETGLRFVEFAKSC-----GVQQTVIAQNVEDAVHYAAPMSAE 416

Query: 459 QDVLVV 464
            D++++
Sbjct: 417 GDIILL 422


>gi|320527377|ref|ZP_08028559.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
 gi|320132234|gb|EFW24782.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
          Length = 523

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 114/368 (30%), Gaps = 22/368 (5%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           F+      L        + +TG+ GK+S  + +Q +                 ++     
Sbjct: 164 FIGQAKKILCEDKDLIKIGITGSYGKTSTKNVMQAMIGEQ------------FNTLMTPA 211

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
              TP  I +           V    + A   G   + +  ++   G  T++G  H+   
Sbjct: 212 SYNTPMGITITIRTLLKPIHKVFVCEMGADHVGEITNLMKFVQPSIGVVTSIGPQHLATF 271

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +Q+     KM++ E L       + Y +D      +K  +        V  +    +  
Sbjct: 272 GSQENIIKEKMQMMELLPKDGLGVLNYDNDFIRNYRLK--NLVKTVSYGVKSRDVDYYAD 329

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +         T+    +       L GE  + N L A  +   + +    +    + + 
Sbjct: 330 DITYTRMGSSFTVVHRDEHVRIETKLLGELNILNILSAICVARHLNVPWPTIQRAAKTMK 389

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSL-EMILKNIRTITSGRIIVV---FGCGGDRDQ 396
            V  R E     +  G  ++D A  SN +   +   + ++      VV       G    
Sbjct: 390 QVEHRLEL---KTINGYRFIDDAFNSNPVGSAMALEVLSMMPNTRYVVTPGMIDLGAIQD 446

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                 G+     AD  I+  +  +++   +   E+   +   I      EA       +
Sbjct: 447 DANKEFGRKMKGKADEVILVGEI-QTKSIYEGLQEVGFDMNRVIVVKTVKEAFDHIYRHV 505

Query: 457 NKQDVLVV 464
              D +++
Sbjct: 506 LPSDTILL 513


>gi|315108238|gb|EFT80214.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL030PA2]
          Length = 498

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 81/303 (26%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 175 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 235 IYHQATNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVE 294

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 295 QRATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 355 HQAGGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 409 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 463 VVA 465
           ++A
Sbjct: 463 LMA 465


>gi|291530397|emb|CBK95982.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium siraeum 70/3]
          Length = 461

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/404 (15%), Positives = 116/404 (28%), Gaps = 34/404 (8%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV ++A    +        + +  V+   + L L  S          + V+GT GK
Sbjct: 67  GADLIVYTAAIMSDNPELIAAKASGVKTVERC-ELLGLVTSWY-----NKAVCVSGTHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +  +     +       T                   +    +   S    H  
Sbjct: 121 TTTSSMLTHMYLAQNIDL----STVIGGKLKAIGGSGRAGSSDVMVCEACEFSNTFLH-- 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +        N+  DH+D+ +T      A    F +          
Sbjct: 175 ---------------LFPNISIILNIDADHLDFFKTMDNLR-ASFTKFCDNTTDILVVNG 218

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             ++                         +    K  +        +    K       +
Sbjct: 219 DDENTMRAVKASGFDKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGNKIERISIHV 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NA+ A    +A G+    + + L        RFE + T   G  +  DYAH  
Sbjct: 279 PGAHNVLNAVAACAAALATGVTPENINKGLSTFWGAGRRFERLATIG-GITVVDDYAHHP 337

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   LK  + +    R+  V       R           AL++AD  ++T+     E 
Sbjct: 338 AEVAATLKTAKAMQDFKRVWAVHQPFTYSRTYTLMDDFAS-ALEIADKVVLTEIMGSREK 396

Query: 425 --PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  A++   IPG        E  R   +     D+++  G
Sbjct: 397 NTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESGDMIITLG 440


>gi|262370857|ref|ZP_06064181.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
 gi|262314219|gb|EEY95262.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter johnsonii SH046]
          Length = 482

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 137/421 (32%), Gaps = 51/421 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           QGA  IVVS+A   ++        T   VV   R+   L       +G      +AV GT
Sbjct: 80  QGANVIVVSTAIDAENPEIKAAIETRTPVV---RRAEMLGELMRYRHG------IAVAGT 130

Query: 124 SGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S V  +        ++ IG     +        +        ++ +       
Sbjct: 131 HGKTTTTSLVTCMLAEENLDPTYVIGGLLNRTGVNAALGASRFIVAEADESDASFLH--- 187

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              ++ +A   TN+  DH+D +             F + LP   
Sbjct: 188 -------------------LQPMATIVTNIDADHMDTYGGSFDVLKDTFVQFLQKLPFYG 228

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FD 301
            A++  DDA  +E+M R                      +     +   T+  + ++   
Sbjct: 229 LAVVCGDDANIREIMPRIGRPLITYGFNEDNDI--RAVDIEQEGMQSHFTVLRKDREPLR 286

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRI 358
               LPG   + NAL A G+    G+  A +   LE    V  RF+  G         ++
Sbjct: 287 LTINLPGLHNILNALAAIGIATDEGVSDAAIARALESFSGVGRRFQVQGEFDIDGGNVKL 346

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVT 416
             DY H    +E  +K  R     R +V+        + +        +     D  ++ 
Sbjct: 347 VDDYGHHPKEVEATIKAARASHPDRRLVMMFQPHRFSRTRDCFDDFVDVLS-HVDQLLLL 405

Query: 417 DDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +  P  E P        +   I + G    I        ++ A++  L   D+L+  G G
Sbjct: 406 EVYPAGEKPIVGADSRSLARSIRLRGDVEPILIDPVEGNLQHALKKVLQADDLLLTQGAG 465

Query: 469 H 469
           +
Sbjct: 466 N 466


>gi|229830143|ref|ZP_04456212.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
 gi|229791441|gb|EEP27555.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
          Length = 458

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/374 (12%), Positives = 98/374 (26%), Gaps = 32/374 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +    ++   +PE+I         +S +     + +     +  +G              
Sbjct: 100 AQLLGQIMSHYPESIAIAGTHGKTTSTSMMSMLLLESDQKPTISVGGILDAIHSNVHVGN 159

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           +        +  +        +                          N+  +H+D+ + 
Sbjct: 160 SDRFVAEACEYTNSFLEFYPKY----------------------SVILNIEAEHLDFFKD 197

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 +  R  E    K    I    + +   ++    +             +      
Sbjct: 198 LDDIRRSFKRFAENTADKGLLVINGEINDWQS-LVADVKSDVQTYGFDDSCDWYPSQISY 256

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                   +    +         +PG   + NAL    +   +G+    + E   K H  
Sbjct: 257 DHFGCASFIPHFRQQTLPLIRLHVPGRHNIGNALSVLAVAHRMGLSEEEIREGFAKFHGA 316

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPI 401
             RF++ G    G  +  DYAH    +   L   +     RI+VVF      R +     
Sbjct: 317 DRRFQYKG-KFHGATVIDDYAHHPTEIRASLAAAKNYPHKRIVVVFQPHTYTRTKAFLED 375

Query: 402 MGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                   AD  I+ D     E          I+  +       +   +  E      + 
Sbjct: 376 FADALSA-ADQVILADIYAAREQDIYGVSSLDIKKRLDAAGVDCLYFPSFEEIEDYLKKN 434

Query: 456 LNKQDVLVVAGKGH 469
               D+L+  G G+
Sbjct: 435 SIDGDLLITMGAGN 448


>gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 449

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 117/362 (32%), Gaps = 39/362 (10%)

Query: 109 LYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             G+H    ++ +TG++GK++       I   +G+ +   G                   
Sbjct: 94  FAGRHTEAKMVCITGSNGKTTTTLLTCHILTTAGIDAGLAGNVGRS-------------- 139

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQTQQAY 226
                  + ++        VE SS  LD   +   +      TN+  DH   Y    + Y
Sbjct: 140 -----LAAQVAEDAHPLYVVELSSFQLD--GMFDFRADIAVLTNITPDHLDRYDHKFENY 192

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            ++K R+   + P++        +A    + +              +  +          
Sbjct: 193 IDSKFRILNNMRPQDLFIYGLDSEAVGHRLRQVRVVPRMAGFIYADRSIWEKNTCRSGAW 252

Query: 287 NKQQVTI----SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            + +  +    + + +       + G   VYNA+ A   C+ +G+    + E L     V
Sbjct: 253 MEGEEVVVQLENRQFRIAKQEISIQGRHNVYNAMAAILACMQVGVSDEKIAEGLRTFPQV 312

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V        I    A   +S    L ++ T      ++    G D+      + 
Sbjct: 313 EHRLETVRVVEGVTYINDSKATNVDSAWYALDSMTT-----PVIWIAGGTDKGNDYSVLF 367

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   +  +  +  DN       K+      GI   ++  +  +A+  A +   + D +
Sbjct: 368 DLVRQKVKVLICMGVDN------RKLIDN-FSGICQVVDTHSLKDALAAARQYAVEGDTV 420

Query: 463 VV 464
           ++
Sbjct: 421 LL 422


>gi|270292242|ref|ZP_06198456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
 gi|270279288|gb|EFA25131.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
          Length = 450

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 131/389 (33%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------APIVGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                      ++     + +E SS  L 
Sbjct: 133 VLTAAGQRGLLSGNIGYPASQV------------------AQTATAKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH + + Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQD----- 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K         +      + +    +       +  + +   +      +PG   V NA
Sbjct: 228 LAKELATRTQATVVPFSTLEKVDGAYLEDGQLYFRGEVIMAADEI----GVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GID+ ++ E L     V  R +FV             +     +    K 
Sbjct: 284 LATIAVAKLRGIDNQIIKETLSAFGGVKHRLQFVDEIQGVKFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 341 LSGFDNSKVILI-AGGLDRGNEFDELVPDITG-LKRMVIL------GQSAERVKRAAEKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +++  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|154485087|ref|ZP_02027535.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
           27560]
 gi|149734040|gb|EDM50159.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
           27560]
          Length = 454

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 96/281 (34%), Gaps = 24/281 (8%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K    +  N+  DH++ H T + Y + KM + +     +   + Y
Sbjct: 164 EISSFQLET--IHTFKPDVSAVLNITPDHLNRHYTMECYTDVKMSIAKNQDSNQPIVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D   +E   +  N      S       ++L+    I+   +    V   +      L 
Sbjct: 222 -EDPILREYAGKLTNRIIWFSSKQKVNPGVYLEGKNIIYADGKKETFVTTTEDTT---LV 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N + A  + I + +   ++ E + K   VP R E+V T +            ++
Sbjct: 278 GIHNVENIMAAIAISINMDVPVDIIRETIRKFKAVPHRIEYVETINDVIYYNDSKGTNTD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA---IVTDDNPRSED 424
           +    ++        R  ++   G D+           A    D     ++       + 
Sbjct: 338 ASIKAIEA-----MSRPTILIAGGYDKKVSFDDW----AEAFGDKVKCLVL-----LGQT 383

Query: 425 PEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E+I   +   G    I   +  EA+    +     D +++
Sbjct: 384 AEQIADTVKKHGFTNIIFTESLKEAVDECAKNAKPGDAVLL 424


>gi|294501021|ref|YP_003564721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
 gi|294350958|gb|ADE71287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
          Length = 449

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 135/441 (30%), Gaps = 79/441 (17%)

Query: 60  IPQAIAQ-GAEAIVVSSAYSLQDFSATIRSNTPI----------------LVVDNT---- 98
             Q + Q GA+ +V       ++ +A     T I                ++V N     
Sbjct: 24  AAQLVKQLGAKVVVNDQKPYEENVAAQELEKTGIEVVCGHHPLELLDKADVIVKNPGIPY 83

Query: 99  -----RKFLS---------LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
                ++ L            A  +        + +TG++GK++  + + ++ +      
Sbjct: 84  SNVLLQEALKRNIPILTEVELAYEISEAP---FIGITGSNGKTTTTTLIYKMLEEDQKQP 140

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G   T++                        +     +  E SS  L    ++  + 
Sbjct: 141 LIAGNIGTVACEV------------------AQKATKDNVIVTELSSFQL--MGIEKFRP 180

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                 NL   H+DYH T++ Y  AK  LF     ++  A+I ADD    +         
Sbjct: 181 KISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSED-FAVINADDELVMKASADVKATK 239

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                     +  ++K               E         LPG+    N L A  +   
Sbjct: 240 VPFSVTAQTTEGAYIKNETIF-------FKDEEVMSLKDVVLPGKHNQENILAAVSVVKL 292

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G  +  +   L     V  R ++V T ++        A    + ++ L           
Sbjct: 293 YGCSNEAIYRVLTTFAGVKHRVQYVTTINKRKFYNDSKATNMLATKVALSAFSQ-----P 347

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI-RAEIIHGIPGFIEKG 443
            ++   G DR      +  +     A   ++T      E   KI R     GI       
Sbjct: 348 TILLAGGLDRGNEFDDLKEEFKNVKA---VIT----FGETAPKIERVAKEAGIQIVKRVD 400

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           N  +A+  A    +++DV+++
Sbjct: 401 NVKQAVSEAYACSDEEDVILL 421


>gi|254387287|ref|ZP_05002546.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
 gi|194346091|gb|EDX27057.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
          Length = 465

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 142/430 (33%), Gaps = 46/430 (10%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH      +A  +  +VVSSA      + +       P++   +    L+    
Sbjct: 55  GATVHIGH--AAAHLAADSTCVVVSSAIRSDNPELARAAELGIPVVHRSD---ALAGLMD 109

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            L        +AV GT GK++  S +       GL          + +   +        
Sbjct: 110 GLRP------IAVAGTHGKTTTTSMLAVSLSALGLD-PSYAIGGDLDAPGSNAHHGEGDI 162

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                  S  S    T                           N   DH   + + +  +
Sbjct: 163 FVAEADESDRSFHKYT--------------------PQVAIILNAELDHHANYASMEEIY 202

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKFIHLKKVCAIH 286
            +      +++P  +  + +     ++   + A N G RV++ G +    + + K+    
Sbjct: 203 ESFETFVAKVVPGGTLVVAHGQAGAAEIAARVAGNEGLRVVTYGEEEAADVRITKITPRG 262

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +VT+ ++G+   F   +PG    +NA+ A    +A+GI +  +   L K   V  R 
Sbjct: 263 LTSEVTVVIDGRMLTFTVSVPGRHYAHNAVAALAAGVALGIPAHNLASALGKYTGVKRRL 322

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGK 404
           +  G  + G ++   YAH    +   L+ IR       I+V        R Q     MG+
Sbjct: 323 QLKG-EAAGVQVIDSYAHHPTEMSADLEAIRGAAGDSRILVVFQPHLFSRTQELGKEMGQ 381

Query: 405 IALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNK 458
                     V D  P  EDP      +I           +   +  +A+   I  M   
Sbjct: 382 ALALADAAL-VLDIYPAREDPIPGITSEIIIASARAAGADVTAEHEKDAVADVIAGMAKP 440

Query: 459 QDVLVVAGKG 468
            D+++  G G
Sbjct: 441 GDLVLTMGAG 450


>gi|121611480|ref|YP_999287.1| UDP-N-acetylmuramate--L-alanine ligase [Verminephrobacter eiseniae
           EF01-2]
 gi|166224746|sp|A1WRL2|MURC_VEREI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121556120|gb|ABM60269.1| UDP-N-acetylmuramate--L-alanine ligase [Verminephrobacter eiseniae
           EF01-2]
          Length = 477

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 79/427 (18%), Positives = 134/427 (31%), Gaps = 64/427 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+A+V S+A +  +          I VV      L+       G      +A+ GT GK
Sbjct: 64  GADAVVTSTAVTADNPEVLAARAKKIPVVPRAL-MLAELMRLKQG------IAIAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  +   +G   +F IG    ++S     +L +   I +    S  S       
Sbjct: 117 TTTTSLVTSVLAEAGLDPTFVIG--GRLNSVGAHAKLGSGDYIVVEADESDASFLN---- 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH++ +             F   +P    AI
Sbjct: 171 ----------------LLPVMAVVTNIDADHMETYGHDFGRLKGAFVDFLHRMPFYGTAI 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFD 301
           +  D    +++M               +   +    + A   +   T+         D  
Sbjct: 215 LCVDSPAVRDIM--PGVTCPITSYGLSEDAQVRAVDLRADGARMHFTVQRSNGVTLPDLA 272

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG----GR 357
               L G   V NAL A  + + + I  A VL  L     V  RF+  G           
Sbjct: 273 VQLNLAGAHNVLNALSAIAVAVELNIPDAAVLRALAGFKGVGRRFQSYGQLPAKDGGQFS 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR------PIMGKIALDLAD 411
           +  DY H    +   L   R    GR +V+        + +        +MG      AD
Sbjct: 333 VIDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRYSRTRDCFEDFVRVMGS-----AD 387

Query: 412 IAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIE---AIRTAIEMLNKQDV 461
             ++T+     E P        +   +   G    +   +  +   AI    E     D+
Sbjct: 388 AVLLTEVYAAGEAPVVAADGRSLARALRVAGRVEPVFVADVADLPQAIA---ENARDGDL 444

Query: 462 LVVAGKG 468
           L+  G G
Sbjct: 445 LLCMGAG 451


>gi|225552147|ref|ZP_03773087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia sp. SV1]
 gi|225371145|gb|EEH00575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia sp. SV1]
          Length = 451

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 120/431 (27%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           + +GA+ ++       +     D                         +VV N       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPSVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
               FA R           +   I+AVTGT GKS++ S + Q  +         G     
Sbjct: 90  KYLKFAKRVETDISLFLMFNKNPIIAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPIISIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +         +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDQAYYKYFSKFKSKVRVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + I       ++    +  S       F+ P    F V   L          ID    
Sbjct: 249 FDQDIFYCNEGKVYFNDNLIGSFSNSRAVFIIPKVITFFVSYYL---------NIDLNHT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R E V  + +    Y D A T     ++          RI ++ G   
Sbjct: 300 GQILNNFKGIEHRLELVK-SVQNVMFYNDTASTIPESTVLSVKSLKTKDNRINLIVGGT- 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D++         ++       + T    R     KI   +      +    +  +A+  A
Sbjct: 358 DKELDF------LSFSKITYIVRTWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|220912337|ref|YP_002487646.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859215|gb|ACL39557.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 525

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 135/416 (32%), Gaps = 42/416 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV S  +          +   I V  +    L+    R  G+   + LA+TGT+GK++ 
Sbjct: 96  LIVTSPGWRPDQALLAAAARAHIPVWGDVE--LAWRVRRREGRKTADWLAITGTNGKTTT 153

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               + + + +GL +  +G                  P+                 +VE 
Sbjct: 154 VGLTESMLRAAGLKAIAVGNVGK------PILDAIREPVE------------YDVFAVEL 195

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L     + +  +A    N+  DH+D+H +  +Y   K +++E             +
Sbjct: 196 SSFQLHW--AESLSPLASVCLNVAEDHVDWHGSYDSYLADKAKVYERTQKACLYNAEQFE 253

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK----VCAIHNKQQVTISVEGKDFDFLFP 305
                E             +       +        V     +++   + E      L P
Sbjct: 254 TERMVENADVVEGCRAIGFTTVTPAISMLGVVEGLLVDRAFIEERRDSAAELAAMADLGP 313

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +     V NAL AAGL  A G+D+A V + +        R + V  +     +    A  
Sbjct: 314 IAPRHMVANALAAAGLVRAYGVDAAAVRQGIRDYVPGDHRIQPVARHEGVLWVNDSKATN 373

Query: 366 SNSLEMILKNIRTITS---GRIIVVFGCGGDRDQGKR-----------PIMGKIALDLA- 410
            ++    L     +     G    V      R+Q  R             +       A 
Sbjct: 374 PHAAAASLAAFTNVVWIAGGLSKGVTYDDLVREQAHRLKAVVLIGTDSTELAGALQRHAP 433

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465
           D+ ++      +E+ +   AE   G    +  +    +A+ TA ++    D +++A
Sbjct: 434 DVPVIAAAPGETEEVQTAAAEGATGTRFPLSGEQVMSQAVATAAQLAGSGDTVLMA 489


>gi|50842243|ref|YP_055470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Propionibacterium acnes KPA171202]
 gi|62900680|sp|Q6A9Q4|MURD_PROAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50839845|gb|AAT82512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes KPA171202]
          Length = 493

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 81/303 (26%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 170 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 229

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 230 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVE 289

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 290 QRATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 349

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 350 HQAGGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKGTHFDNLVTTHAGKL 403

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 404 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 457

Query: 463 VVA 465
           ++A
Sbjct: 458 LMA 460


>gi|332305226|ref|YP_004433077.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172555|gb|AEE21809.1| UDP-N-acetylmuramate/alanine ligase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 484

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 140/419 (33%), Gaps = 52/419 (12%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA      + +A      P++     R+   L+      +G      +A+ GT
Sbjct: 77  ANVVVVSSAIDPTNPEVNAANEKRIPVI-----RRAEMLAELMRFRHG------IAIAGT 125

Query: 124 SGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
            GK++  S +  I  Q     +F IG    ++S   + RL +         ++       
Sbjct: 126 HGKTTTTSLIATIFAQAELDPTFVIG--GLLNSAGTNARLGSS-----QYLIAEADESDA 178

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           + V                ++ +    TN+  DH++ +Q            F   LP   
Sbjct: 179 SFV---------------HLQPMVSVVTNIEPDHMETYQGDFDKMQDTYIDFLHNLPFYG 223

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD    E++ R                     K     ++    I  +  D   
Sbjct: 224 LAVLCIDDPVITELLPRIKRKYLTYGYSENADVRATNVKHRFNQSEFT-LIRKDHDDIQV 282

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY--- 359
               PG+  V N+L A  +     I  + +   L     +  RFE +G  + G       
Sbjct: 283 TVNAPGKHNVLNSLAAIAVATDENIADSAIKTALANFSGIGRRFEMLGEFATGDGDVLLV 342

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD 417
            DY H    +E  +   R     R +V+        + +       ++     D+ ++ D
Sbjct: 343 DDYGHHPTEVEATIAVARNNWPDRRLVMAYQPHRYSRTRDLYEDFVRVLSQ-VDVLLLLD 401

Query: 418 DNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E      D + +   I   G    I   ++ E  +   + L+ QD+L+  G G+
Sbjct: 402 VYSAGEEKIEGADSKSLCRSIRQRGQLEPIYVADKSELPKLLADNLSDQDILMTQGAGN 460


>gi|124021741|ref|YP_001016048.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9303]
 gi|166224716|sp|A2C5M3|MURC_PROM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123962027|gb|ABM76783.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 488

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 83/268 (30%), Gaps = 26/268 (9%)

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                A +      + +           +   ++K   +A          G       +C
Sbjct: 202 HTDHYADLDELINTMKRFGRGCRRLLANFDCPILKEHFDATAWWSVKTSAGVDFAALPIC 261

Query: 284 AIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              ++    I  +GK       P+PG   + NA+ A   C   G+    + + L  L   
Sbjct: 262 LNGDQTIADIYEQGKRMGQITLPMPGLHNLSNAMAAIAACRLAGLSFEDLQQGLADLQPP 321

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----------TSGRIIVVFGCGG 392
             RF+F G    G +I  DYAH  + +   L   R I             RI+ VF    
Sbjct: 322 GRRFDFRG-TWEGRQIVDDYAHHPSEVSATLAMARLIVTSGRSQLPSPPKRILAVFQPHR 380

Query: 393 -DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAI 449
             R         +   + AD  ++       E+P  I+      +   I     N   A+
Sbjct: 381 YSRTNEFLYEFARALGE-ADAVLLAPVYSAGENP--IQGATSESLANAIRIQHPNLPVAV 437

Query: 450 RTAIEMLN--------KQDVLVVAGKGH 469
                 L         K D+++  G G+
Sbjct: 438 AENFNQLTLLVQKHSLKGDLVLAMGAGN 465


>gi|88807416|ref|ZP_01122928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
 gi|88788630|gb|EAR19785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
          Length = 462

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 123/357 (34%), Gaps = 33/357 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              +           + +TGT+GK++V   +Q +   +GL +   G              
Sbjct: 98  GEMSVAWDALRGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGY---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   LA  +   +      V +E SS+ ++      +    G +T L  DH++ H T
Sbjct: 148 ---SAAELALEVLQGTRPKPDWVVMEMSSYQIEA--AAEVSPRIGIWTTLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +    A   +   LL +    ++ ADDA  ++       +  R +S G         ++
Sbjct: 203 IE----AYRAIKRGLLERSEIPVLNADDADIRQHCGHWSRSCIRWVSCGDHSPEGGNPQL 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                        +        PLPGE    N L+     +A G+ ++ +   L     V
Sbjct: 259 TVNAQGWVSR-GEQHLFPADSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCFTGV 317

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G+           A   ++  + L++++       +V+   G  +     P +
Sbjct: 318 PHRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQA-----PVVLLAGGQTKKGDAVPWL 372

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPG-FIEKGNRIEAIRTAIEMLN 457
             I   +A + +        E   ++   I   G  G  I   +   A+  A+ +  
Sbjct: 373 KLIQSQVAGVVLF------GEGAGELADLIETSGFAGPMIHCADLDSAVSQALSLAR 423


>gi|291166629|gb|EFE28675.1| UDP-N-acetylmuramate--alanine ligase [Filifactor alocis ATCC 35896]
          Length = 452

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 84/275 (30%), Gaps = 13/275 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G   N+  DH+DY  +      +  +  + +            D  +     +  
Sbjct: 168 LYPKFGIILNIEADHLDYFDSLDVIIQSFRKFSQNVSSNGYTIA--NGDDQNVRTALKDL 225

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                          I         N              F   +PG+  + NA  A   
Sbjct: 226 PNCILFGYDKNNDAVIVDNSFDKNGNGHFSIQLDSDILGPFSIKVPGKHNIMNATAAILT 285

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                I    +   +   H V  RF++ G N     +Y DYAH  + ++  L   + +  
Sbjct: 286 AYKDDIPLEKIQHGIFSYHGVDRRFQYKG-NYGDVLVYDDYAHHPSEIKATLSAAKFLNP 344

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE------DPEKIRAEII 433
            R++ +F       + K  ++ + A     ADI I+TD     E        + +   + 
Sbjct: 345 NRLVAIF-QPHTYTRTK-SLLEEFATSFYDADIVIITDIYASRETDTGLVSSQDLVNRLK 402

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 I   +  E       +L K D++   G G
Sbjct: 403 AHGKDAIHLNDITELQNYLDPILQKNDIIFTIGAG 437


>gi|264680248|ref|YP_003280158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
 gi|262210764|gb|ACY34862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
          Length = 634

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 118/373 (31%), Gaps = 46/373 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +   +L +TGT+GK++V S   Q+ +  GLS    G            R+       L  
Sbjct: 248 YAPKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPSLLDTLSARI---DAETL-- 302

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         +E SS  LD  R  G +  A +  N+ +DH+D+H   QAY +AK  
Sbjct: 303 ---------PQAWVLELSSFQLDDCR--GFEPTAATVLNITQDHLDWHGGMQAYADAKAH 351

Query: 233 LFEELLPK-----ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +F E         +   +       +    +        V   G   +      +  ++ 
Sbjct: 352 VFGEQALMVLNREDPVVMAMLPAPVAVPSKRGKTFQRAHVSFGGDMPRRPGDFGLEVVNG 411

Query: 288 KQQVTISVEGKDFDFLFP----------------LPGEFQVYNALVAAGLCIAIGIDSAL 331
              +  + E  +                      + G     NAL A  L    G   A 
Sbjct: 412 MTWLVRAHEADETSKGKNADDLHIVRLMPADALRIRGRHNAINALSALALATGAGCTLAP 471

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           +L  L +    P R + VG                 +       +  +     IVV   G
Sbjct: 472 LLYGLREYRGEPHRVQPVGRVGDVEYFDDSKGTNVGATVA---ALMGLGPDHRIVVILGG 528

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
             + Q   P+           A++       +D   IR  +       ++  +  +A++ 
Sbjct: 529 LGKGQDFTPL-AAPVSRYVRAAVLI-----GQDAPLIREALGDTGVTLVDAASMQDAVQQ 582

Query: 452 AIEMLNKQDVLVV 464
           A  + +  D +++
Sbjct: 583 AARLAHANDAVLL 595


>gi|255533212|ref|YP_003093584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
 gi|255346196|gb|ACU05522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
          Length = 447

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 121/363 (33%), Gaps = 40/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R         + +TG++GK++       I + +GL+    G               
Sbjct: 96  EFAKRYTK---AKTICITGSNGKTTTTMLTYHILKNAGLNVGLAGNIG------------ 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                      + ++S       +E SS  LD   +   K       N+  DH+D +  +
Sbjct: 141 -------HSFAAQVASADFDWYVLEISSFMLDD--MYDFKADIAVLLNITPDHLDRYDYK 191

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A      +    E   I  ADD  + + +K       +      + K      + 
Sbjct: 192 LGNYAASKMRITQNQTSEDIFIYCADDEETLKALK-NVKVDSKTYPFSIRKKIEKGAYLE 250

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           + +    + ++ +         L G+  +YN++ +  +   + I +  + E +     + 
Sbjct: 251 SNNIHININLNDQLTMSITELALQGKHNIYNSMASGIVAKVLDIRNTAIRESMGDFKNIE 310

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   S    I    A   NS    L+++ T        V    G  D+G    M 
Sbjct: 311 HRLEHVARISGVDYINDSKATNVNSTWYALESVGTD-------VILIMGGVDKGNDYDML 363

Query: 404 KIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           K  +     AIV    DN R      I       +   +   +  EA++ A  +  K + 
Sbjct: 364 KDMVRQKVKAIVCLGKDNKR------IHEAFEDDVEIIVNTFSAHEAVQVAYHLAKKGNT 417

Query: 462 LVV 464
           +++
Sbjct: 418 VLL 420


>gi|160871628|ref|ZP_02061760.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
 gi|159120427|gb|EDP45765.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
          Length = 471

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 144/429 (33%), Gaps = 51/429 (11%)

Query: 55  DGH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
            GH   +I  A     + IV SSA S  +       +  I VV      L+      Y  
Sbjct: 63  HGHHEKYIRDA-----DVIVYSSAVSCDNVEIQAARHALIPVVPRAL-MLAEIMRFRYS- 115

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                +AV GT GK++  S V  +    G   +F IG    ++S     RL +   +   
Sbjct: 116 -----IAVAGTHGKTTTTSLVASLLGEGGLDPTFVIG--GKLNSTRTHARLGSGRYLVAE 168

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
              S  S                       +K +    TN+ RDH+  +           
Sbjct: 169 ADESDASFLY--------------------LKPMIAIVTNIDRDHMGTYSGNFQQLKKSF 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP    A++  DD + + ++                   I   +   I N  + 
Sbjct: 209 LEFLWHLPFYGLAVLCCDDPFIRSILPDIMRPILTYGFSEDADIRITSFQQKEIKNYFR- 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  + K  D +  LPGE    NAL A  +   +GI + ++ + L     V  RF+ +G 
Sbjct: 268 VLRPKKKPMDIILNLPGEHNALNALAAIAVASELGIKNDVICKALSHFSGVDRRFQVLGK 327

Query: 352 NSRGGRI---YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            +          DY H    +   LK IR     R  +V      R    R +       
Sbjct: 328 LTCKHGDALLIDDYGHHPREIAATLKAIRHAWPDRR-LVMTYQPHRYTRTRDLFSDFVKI 386

Query: 409 LA--DIAIVTDDNPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           L+  D  ++ +     E      D   +   I ++     I   ++ + +    E++   
Sbjct: 387 LSQVDHLLLLNVYAAGEAVISGADSAALLKSIHLNKQINPIHIEDKEKLMSILDEIIQDG 446

Query: 460 DVLVVAGKG 468
           DVL++ G G
Sbjct: 447 DVLLLQGAG 455


>gi|330981219|gb|EGH79322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 448

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 121/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T +         
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPALDLLS---- 153

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L                +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 154 --DEVEL--------------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYNGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      +   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFNGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMSVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +P  +       A+  + ++  + D ++
Sbjct: 366 APVAKYCRAAVL-----LGRDAELIAQALGDAVP-LVRVDTVQAAVEHSAKLALRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|294501413|ref|YP_003565113.1| folylpolyglutamate synthase [Bacillus megaterium QM B1551]
 gi|294351350|gb|ADE71679.1| folylpolyglutamate synthase [Bacillus megaterium QM B1551]
          Length = 432

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 15/166 (9%)

Query: 308 GEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                  AL    +C              +    +     GRFE V   +      +D A
Sbjct: 261 YHQVKNAALAVMAVCYLKEKKKLSISKEQMIKGIQHTKWNGRFEIV---NEHPLTIIDGA 317

Query: 364 HTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPR 421
           H +  ++ +L  +R     R I +VF C  D+   +   M +    +A     T  D PR
Sbjct: 318 HNAEGIDSLLSTLRLHYEDRSIHLVFSCLNDKSADR---MVQELETIAASITFTSFDFPR 374

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAG 466
           +   +++     H      E+    +AI    E    +QD++V+ G
Sbjct: 375 ARPAQELYEMSTHHNKHMDEEW--KKAIAYVKEKATGEQDMVVITG 418


>gi|51595039|ref|YP_069230.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           IP 32953]
 gi|150260409|ref|ZP_01917137.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125]
 gi|167469525|ref|ZP_02334229.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis FV-1]
 gi|218927752|ref|YP_002345627.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis CO92]
 gi|229837053|ref|ZP_04457218.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A]
 gi|229840444|ref|ZP_04460603.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843014|ref|ZP_04463164.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900779|ref|ZP_04515903.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516]
 gi|20532169|sp|Q8ZIE8|MURC_YERPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798206|sp|Q66EK4|MURC_YERPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082521|sp|A7FM65|MURC_YERP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082522|sp|Q1C215|MURC_YERPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082523|sp|Q1CMM6|MURC_YERPN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082895|sp|A4TQ82|MURC_YERPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51588321|emb|CAH19929.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|115346363|emb|CAL19235.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis CO92]
 gi|149289817|gb|EDM39894.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis CA88-4125]
 gi|229682118|gb|EEO78210.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Nepal516]
 gi|229689890|gb|EEO81949.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696810|gb|EEO86857.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705996|gb|EEO92005.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis Pestoides A]
 gi|320016922|gb|ADW00494.1| UDP-N-acetylmuramate:L-alanine ligase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 491

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 134/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMLSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +    +    +  
Sbjct: 227 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLR-RQDKPLIEVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 286 LNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGS 345

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +   A     ++LN +D+++V G
Sbjct: 405 LMLDVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|119358484|ref|YP_913128.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
 gi|166222971|sp|A1BJX7|MURC_CHLPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119355833|gb|ABL66704.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 466

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 85/262 (32%), Gaps = 26/262 (9%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        +L  +H+D + T +    A +    ++                 E+ K   
Sbjct: 173 LTPTIAVINSLESEHMDTYGTIEELRKAFIAFANKVPFYGRVICCV----DWPEIRKLIP 228

Query: 262 NAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAA 319
           +   R  + G      +    +    N+ + T+   GK++      +PG   V NAL A 
Sbjct: 229 HLNRRYTTFGIDEPADVMASDMVMDKNRSRFTVRASGKEYPGVSLNVPGRHNVMNALAAF 288

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              + +GI    ++  L +   +  RF+    NS G  +  DYAH  + ++  +K  R  
Sbjct: 289 ASGLELGIAPERIIAGLTRYSGMRRRFQIKYDNSAGVLVVDDYAHHPSEVKAAVKAARDG 348

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDL------ADIAIVTDDNPRSEDPEK------ 427
                IV         + +     + A +       AD   V D  P  E          
Sbjct: 349 WPNAEIVAVFQPHLFSRTR-----EFADEYGWALLRADKIYVADIYPSREKAADYPGVSG 403

Query: 428 --IRAEI-IHGIPGFIEKGNRI 446
             + A +   G        +R 
Sbjct: 404 SLVAAAVHKAGGKHAEFIADRE 425


>gi|296394166|ref|YP_003659050.1| FolC bifunctional protein [Segniliparus rotundus DSM 44985]
 gi|296181313|gb|ADG98219.1| FolC bifunctional protein [Segniliparus rotundus DSM 44985]
          Length = 463

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E +    +   + VD AH  +  + +   +     +     V    GD+D   R +
Sbjct: 321 PGRLERMPAAPQDPLVLVDAAHNPHGAQALAGALAEDFPNTPFHAVLSVMGDKDV--RGV 378

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLN-K 458
           +  +   L+ + I  + +PR+   + +             + + +  EA+ TA E+   K
Sbjct: 379 LEALKPALSSVVITHNGSPRALAADALAEVARTVFEPKRVVVQPDFAEAVSTAKELAALK 438

Query: 459 QDVLVVAG 466
            + ++V G
Sbjct: 439 GEGVLVTG 446


>gi|325510600|gb|ADZ22236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum EA 2018]
          Length = 462

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 106/359 (29%), Gaps = 43/359 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  I  VTG+ GK++  + +  + +  G  ++  G   T          T    +
Sbjct: 112 FIKYCPAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVGGNIGTPLFSKIKEVSTKDKVV 171

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L       +       TNL  +H+D H+  + Y N
Sbjct: 172 ------------------LELSSFQL---MTIDVSPEVAVVTNLSPNHLDIHKNMEEYIN 210

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F     K +  II  D+  +  +   A     +           +  K       
Sbjct: 211 AKKNIFTH-QSKGNVLIINRDNEITNNMESEALGDLLKFSRNEKVKNGAYYNKQDGNIYL 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  I  +                    +AA   ++  +    +++       V  R EF
Sbjct: 270 FENKICNKDDI------KIKGMDNVENFMAAFCAVSKDVSKESMIKVAMNFAGVEHRREF 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +       L         R +++   G D+     P+    A  
Sbjct: 324 VRELDGVKYYNDSIASSPTRTISGLNAYE-----RPVILIAGGYDKHIPFEPL----AEK 374

Query: 409 LADIAIV-----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             D   V        N   E  +K+  E    +P  I   N  EA+  A ++    D++
Sbjct: 375 GYDKIKVLILMGATKNKIKETFDKVICEKNIKLP-IILSDNLEEAVCEAKKVATNGDIV 432


>gi|149371575|ref|ZP_01890991.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
 gi|149355202|gb|EDM43762.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
          Length = 444

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 116/361 (32%), Gaps = 38/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS         ++ +TG++GK++ A+   ++ +   L+    G      +        
Sbjct: 95  EFASAFTD---ATVVGITGSNGKTTTATLTFELLKEE-LNVALGGNIGKSFAEQVSEE-- 148

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                               +  +E SS  LD   +          TNL  DH+D ++  
Sbjct: 149 -----------------KYNNFVLELSSFQLD--GIKDFAPHIAVLTNLSPDHLDRYEYD 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A          +E   I  ADD    + M        ++     Q          
Sbjct: 190 YDKYIASKFRITMNQTEEDYFIYDADDEEITKWMSVHEIKAKKLPFSLKQKFDEGAYIKD 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                                   G+  V NA+ A  +   + I  A + E LE    V 
Sbjct: 250 NQIVITINNTHFTMSIAALGLK--GQHNVKNAMAATTVATLLKIRKATIRESLENFQGVE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        +    A     +      + ++TS  + +V G   D+      ++ 
Sbjct: 308 HRLEKVVKIGNVLYVNDSKATN---VNATYYALDSMTSPTVWIVGGV--DKGNNYEDLLP 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  I  +  DN      +KI ++  + +   +E  +  EA++ A ++  + D ++
Sbjct: 363 LVNEKVKAIICLGVDN------QKIISQFGNVVDMMVEASSMAEAVKVAYKLSERNDTVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|330828046|ref|YP_004390998.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
 gi|328803182|gb|AEB48381.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
          Length = 484

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 139/418 (33%), Gaps = 48/418 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA  +VVS+A    +          I VV   R+   L+      +G      +A+ GT 
Sbjct: 78  GASVVVVSTAIKQDNPELLAARELRIPVV---RRAEMLAELMRFRHG------IAIAGTH 128

Query: 125 GKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  I  +     +F IG    ++S   + RL +   +    A +  S     
Sbjct: 129 GKTTTTSLVASIYAEADRDPTFVIG--GLLNSAGTNARLGSSRYL---IAEADESDASFL 183

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+    S                   TN+  DH+D +    +   A    F   LP    
Sbjct: 184 HLQPMVS-----------------IVTNIEADHMDTYGGDFSKLKATFIEFLHNLPFYGL 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   + ++            +        L  V   ++        E  +    
Sbjct: 227 AVVCIDDPVIRGMLPEIARPTL-TYGLSDDADVQVLDFVQTTNHSCFRVRRKEAGELLVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYV 360
             LPG     NA  A  +    G+    ++  L K   V  RF+  G    G     +  
Sbjct: 286 LNLPGIHNALNAAAAIAVATEDGVSDEAIISALAKFEGVGRRFQQYGEFETGRGKAMLVD 345

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD 418
           DY H  + +++ +   R      R+++VF      R +        +     D+ ++ + 
Sbjct: 346 DYGHHPSEVKVTINAARAGWPEKRLVMVFQPHRYTRTRDLYEDFADVLSK-VDVLVMLEV 404

Query: 419 NPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               E+P        +   I   G    I      +      +++ + D+++  G G+
Sbjct: 405 YAAGEEPIPGADGRALCRSIRSRGNLEPIFVATPDDVPAVLADLIGEGDLVLTQGAGN 462


>gi|260881599|ref|ZP_05404797.2| tetrahydrofolate synthase [Mitsuokella multacida DSM 20544]
 gi|260848349|gb|EEX68356.1| tetrahydrofolate synthase [Mitsuokella multacida DSM 20544]
          Length = 439

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 12/168 (7%)

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLE-----KLHVVPGRFEFVGTNSRGGRIYV 360
                        A + I +  +    +         +L   P RFE +    +   I V
Sbjct: 260 HLLGVHQVENSAVALMTIRLLHNIDDRITMKTVTEALRLVSWPARFERLELGQQ--AIVV 317

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DD 418
           D AH    ++ + +++     +   +++ G   D+D      M  I L   D  +VT   
Sbjct: 318 DGAHNPAGMKALRESLDEIFPAEERVLLLGILKDKDID---TMLDILLRPNDTVVVTVPQ 374

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + R++    +   +   +       N  EA+  A+E+ N + +LV+AG
Sbjct: 375 SERADSAADLLRRVAPAVQHVEAFENNTEALNRALELANGEKLLVIAG 422


>gi|254168657|ref|ZP_04875500.1| FolC bifunctional protein [Aciduliprofundum boonei T469]
 gi|197622491|gb|EDY35063.1| FolC bifunctional protein [Aciduliprofundum boonei T469]
          Length = 422

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 98/299 (32%), Gaps = 11/299 (3%)

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           +NR  T   +    A  Y S   V    +E    G    RLD   ++    T++    +D
Sbjct: 110 ENRNPTFFEVSTMLAFEYFSYMSVDFAVLEVGLGG----RLDATNIVMPEITSIVTIDLD 165

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           +  T       +    E+    +    +   +   + + +    A  R          + 
Sbjct: 166 H--THILGDTIRDIAREKAGIIKPNVPVVIGENKKEAIEEIKRIAELRNAPYHNIWDEME 223

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
            + V    N  +         +    PLPG+ Q+ N LVA  +   +  + ++    +E 
Sbjct: 224 FEDVHIDLNGLRFKAHTPISTYTIETPLPGKHQITNMLVAIRIAELLQENYSISHSDIED 283

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                   +      R   +  D AH  ++   ++  IR +       +F    D++   
Sbjct: 284 GIKNIKWKDRFQVKRRRPLLIFDSAHNPSAARALVSTIRDVGIEEPTFLFSILSDKNID- 342

Query: 399 RPIMGKIALDLADIAIVTDDN--PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                K    ++   IVT+ +   R  + E I           I   N  +A++ A+E 
Sbjct: 343 --EFLKEISKVSKKIIVTEIDYERRRTELEDIVEHAKKYFSEVIPIKNPCDALKYAMEN 399


>gi|116747993|ref|YP_844680.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697057|gb|ABK16245.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 477

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 124/406 (30%), Gaps = 37/406 (9%)

Query: 70  AIVVSSAYSLQDFSAT--IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +++ +A    +  A   +    P L +          A      H   ++A  GT GKS
Sbjct: 71  LVIIGNAIRRTNPEAEYVLSHGLPYLSMP------QAIAEFFLCAHKSMVVA--GTHGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + +S +  +  R GL           +  +       P  +        +          
Sbjct: 123 TTSSLLSWVLSRGGLDPSVFVGAFIKNWNSSYRIGRGPFMV--------IEGDEYDTAFF 174

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           +     L      GI       T++  DH D     +A   A  R F  L+  +   I+ 
Sbjct: 175 DKGPKFLHYSPWIGI------VTSVEFDHADIFTDFEAVRRA-FRSFARLIQPDGHLILN 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA    + K +                I          +      +       L  +P
Sbjct: 228 ADDANCLALAKESRGRVTTYGWSRTADWRIVDMIHTDGRIRFTYENPLSRGTESILTRMP 287

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N++         G+D   V + L     V  R + +G    G  +  D+AH   
Sbjct: 288 GRHNVSNSMAVMAAASLAGLDRNAVQDGLLTFEGVKRRQDILG-EIGGILVMDDFAHHPT 346

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT--------DDN 419
           ++   ++ ++     R I         +  +R +  +      D A           D  
Sbjct: 347 AVRETIQALKDFYPRRRIFC-AFEPRTNSSRRSVFQQAYTTAFDDAFCICIKHPPGMDAI 405

Query: 420 PRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           PR E  D +K+ A+I           +  + I   ++     D++V
Sbjct: 406 PREERLDVQKLVADIAERGKECHGFASAEDLIGFLVDHCASGDLVV 451


>gi|327194621|gb|EGE61471.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli
           CNPAF512]
          Length = 471

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 87/281 (30%), Gaps = 17/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNAL 316
                              ++    +   V I                P+PG   + NA 
Sbjct: 233 RKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHNISNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI S  + + L     V  RF   G    G +I+ DY H    ++ +L+  
Sbjct: 293 AAIAVANRLGISSVDIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLRAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK------I 428
           R    GRII V      R      +  + A     AD   +       ED  +      +
Sbjct: 352 REACKGRIIAV--HQPHRYSRLASLFEEFAACFNDADSIFLAPVYAAGEDAIEGVDSTSL 409

Query: 429 RAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            + I  G        +  E + +   E+    D +V+ G G
Sbjct: 410 VSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAG 450


>gi|241668293|ref|ZP_04755871.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876825|ref|ZP_05249535.1| glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842846|gb|EET21260.1| glutamate ligase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 561

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 123/377 (32%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WSKVYDIPAVIVTGTNGKTTTVRLTDYICRTAGK---LTGYTSTDWVKVNDELIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH   D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  +F  +       I   +    ++  K +                 +L K     
Sbjct: 283 AEAKAIVFRTMGKDSHAVINLDNFYMKQQFDKLSCAKIIVTQDPDQHDMDYYLSKADYAC 342

Query: 287 NKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             +    +   K                    +  + NA++A  L   +GID   + + L
Sbjct: 343 VVENGIFTWIDKKSKKQILPVVDAPLTVKGFAKHNIENAMIAIALSFKLGIDFDYIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  I+     G+  ++ G  GD
Sbjct: 403 RSYKNDPKVNRGRANIFEFDNKVAVLDYAHNEAGMEALLNMIKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   I     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIILEHGIDFVVIKETEKYLRGAKPLELPTLIRDDLERKGFDISKTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            +  ++  ++ML   D+
Sbjct: 523 ELIGVKYILDMLEDNDI 539


>gi|153949929|ref|YP_001402343.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           IP 31758]
 gi|165928218|ref|ZP_02224050.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937849|ref|ZP_02226410.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008796|ref|ZP_02229694.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211992|ref|ZP_02238027.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401224|ref|ZP_02306724.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422021|ref|ZP_02313774.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426494|ref|ZP_02318247.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025732|ref|YP_001722237.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           YPIII]
 gi|186894045|ref|YP_001871157.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pseudotuberculosis
           PB1/+]
 gi|270487851|ref|ZP_06204925.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27]
 gi|294502644|ref|YP_003566706.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003]
 gi|152961424|gb|ABS48885.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           IP 31758]
 gi|165914261|gb|EDR32877.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919829|gb|EDR37130.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992135|gb|EDR44436.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206738|gb|EDR51218.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960158|gb|EDR56179.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049249|gb|EDR60657.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054592|gb|EDR64400.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752266|gb|ACA69784.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           YPIII]
 gi|186697071|gb|ACC87700.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pseudotuberculosis
           PB1/+]
 gi|262364621|gb|ACY61178.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis D182038]
 gi|270336355|gb|EFA47132.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM D27]
 gi|294353103|gb|ADE63444.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Z176003]
          Length = 500

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 134/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 88  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAVAGT 136

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 137 HGKTTTTAMLSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 193

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 194 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 235

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +    +    +  
Sbjct: 236 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLR-RQDKPLIEVT 294

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 295 LNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGS 354

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 355 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVLSQ-VDVL 413

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +   A     ++LN +D+++V G
Sbjct: 414 LMLDVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQG 473

Query: 467 KGH 469
            G+
Sbjct: 474 AGN 476


>gi|310657783|ref|YP_003935504.1| UDP-n-acetylmuramate--l-alanine ligase [Clostridium sticklandii DSM
           519]
 gi|308824561|emb|CBH20599.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           sticklandii]
          Length = 453

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 88/274 (32%), Gaps = 12/274 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+DY    +    A    F   +  +   I   DD    + +K    
Sbjct: 169 YPKIAIILNVEEDHLDYFSGLEQIE-ASFAKFASQVKPDGFVIANGDDENILKALKDVDK 227

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                         IH +   +           +     F   +PG+  V NA  A    
Sbjct: 228 TKIYFGRNKNCQAIIHDEVYNSSGYATFSLSMDDKFIGRFTLKVPGKHNVLNATAAILSA 287

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
               +    +   +E    V  RFE+ G    G ++Y DYAH    +   L   + I   
Sbjct: 288 YVSKLPLDAIKTGIESYTGVGRRFEYKG-EVNGIKVYDDYAHHPTEVAATLSAAKMIKHH 346

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDN-PRSEDPEKI-----RAEIIH 434
            +  +F       + K  ++ + A+    +D+ I++D    R  DP  I        I  
Sbjct: 347 LLYTIF-QPHTYTRTK-ELLDRFAVSFNDSDVVIISDIYASRENDPGNIHSKDLVEAIKK 404

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +  G+  E       +L  +D++   G G
Sbjct: 405 SGKDALYIGSLDEVQNYLGSVLEPEDIVFTIGAG 438


>gi|300780833|ref|ZP_07090687.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
 gi|300532540|gb|EFK53601.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
          Length = 465

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 130/412 (31%), Gaps = 46/412 (11%)

Query: 70  AIVVSSAYSLQDFSA---TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD            P++   +    L               +   GT GK
Sbjct: 71  VVVTSFAAIPQDNPELVGAAEHGIPVIRRSDL---LGELMEGY------TQMLFAGTHGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G                 D        +  A   ++  S  V    
Sbjct: 122 TSTTSMAVVALQAAGE----------------DPSFAIGGQLNRAGTNAHHGSGAVFVAE 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S   L ++R           TN+  DH+DY    + Y+      F + +      I+
Sbjct: 166 ADESDGSLLRYR-----PDIAVITNIEPDHLDYFGDAETYYKV-FDDFADRITDTGTLIV 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFD 301
             DD  + E   RA   G  V+  G             +  + +  +SV      G +  
Sbjct: 220 CLDDESAAECGVRALERGVTVVGYGTMTHPSIPNAAHVVDWRTENDLSVVKVNLNGTEMT 279

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   +PG+  V N++ A    +  G D   + E L     V  RFE  G  S G R+Y D
Sbjct: 280 YHLSIPGKHMVLNSVAALVAGVTAGADPFALAEGLSGFTGVRRRFELRGELSDGTRVYDD 339

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
           YAH    ++ +LK  +   +  ++        R Q                 ++     R
Sbjct: 340 YAHHPTEVDAVLKAAKGTGARVVVCFQPHLYSRTQEFAGEFADALSLADAAVVLDIFGAR 399

Query: 422 -----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  D   I   +   I   + + N   A     +++   D+++  G G
Sbjct: 400 ETPVEGLDSRIITDHMS--ITDVVYEPNFSAAPAAVAKLVRPGDLVLTMGAG 449


>gi|196034514|ref|ZP_03101923.1| FolC bifunctional protein [Bacillus cereus W]
 gi|195993056|gb|EDX57015.1| FolC bifunctional protein [Bacillus cereus W]
          Length = 433

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 109/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENRAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T IEM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKIEMIGENDVFIITG 417


>gi|149910628|ref|ZP_01899266.1| UDP-N-acetylmuramate--L-alanine ligase [Moritella sp. PE36]
 gi|149806356|gb|EDM66331.1| UDP-N-acetylmuramate--L-alanine ligase [Moritella sp. PE36]
          Length = 485

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 136/420 (32%), Gaps = 50/420 (11%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + A  +VVS+A  L +    A   +  P++      + L+      +G      +A+ GT
Sbjct: 77  RNASVVVVSTAIDLTNPEIVAAHENRIPVIKRA---EMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S  + V  I   +GL    +     + S   +  L T   +      S  S     
Sbjct: 128 HGKTSTTALVTGIYHEAGLDPTFV-NGGLVKSTGTNAGLGTSRYLIAEADESDASFLL-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +    A        F   LP    
Sbjct: 185 ------------------LQPMVAVITNIEADHMDTYGGDFAKLEKTFVDFLHNLPFYGL 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADDA  ++++                     +  V   H         +  D    
Sbjct: 227 AVMCADDAVIEKLIPDVGRQ-VVTYGFAENADVRIIDYVQKGHKSHFTICRKDRDDLRVS 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYV 360
              PG+    NA  A  +    GID   ++  L        RFE +G    G     +  
Sbjct: 286 LNSPGQHNALNATAAVAVATEDGIDDRAIVTALANFAGTGRRFEQLGEFDSGAGNVMLVD 345

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD 418
           DY H    +++ +   R      R++ VF      R +        +     D+  + + 
Sbjct: 346 DYGHHPTEVDVTITAARAGWPEKRLVSVFQPHRYTRTRDLYEDFANVLSK-VDLLFLLEV 404

Query: 419 NPRSEDP------EKIRAEIIH-GIPGFIEKGNRIE--AIRTAIEMLNKQDVLVVAGKGH 469
            P  E+P        +   I   G    I   +  E  AI    E L   D+++  G G+
Sbjct: 405 YPAGEEPIPGADSRSLCRSIRQRGNIEPIFVSSPDEIPAILA--EHLQDGDLVLTQGAGN 462


>gi|307824829|ref|ZP_07655052.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
 gi|307734187|gb|EFO05041.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
          Length = 479

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 116/351 (33%), Gaps = 44/351 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I+A++G++GKS+V + + ++ + +G+     G   T               + L   
Sbjct: 132 DAPIVAISGSNGKSTVTTMLGEMAKATGMKVGVGGNLGTP-------------ALDLLAL 178

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            + L         +E SS  L+  R   +  +A +  N+  DH+D H     Y   K R+
Sbjct: 179 NAQL-------YVLELSSFQLE--RTSALNAVAATVLNVSADHLDRHVDMAEYAREKQRV 229

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F         A    DD     +           ++        +      + + +   +
Sbjct: 230 FRGDGVMVINA----DDPVVYAMRDDGRKVFTFSINKKADFYLGYKDDTEYLMHDEACLM 285

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +         PL G     NAL A  L +A+G+D  ++ + L     +  R + V    
Sbjct: 286 PL------AELPLEGRHNAANALAALALGVAVGLDEQIMCDALRIFKGLSHRMQRVAEIR 339

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A    +    L+           V+   GGD        +     + A   
Sbjct: 340 GVTWVNDSKATNIGACVAALQGYAR------KVILIAGGDAKGADMNELTPAIKEKAKSV 393

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++   +        +  + ++G        N  +A+  A  + +  + +++
Sbjct: 394 VLMGKD------AGLIKQALNGCVPVYSADNMAQAVEIAAGLADVGESVLL 438


>gi|291557260|emb|CBL34377.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium siraeum
           V10Sc8a]
          Length = 461

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/404 (15%), Positives = 115/404 (28%), Gaps = 34/404 (8%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV ++A    +        + +  V+   + L L  S          + V+GT GK
Sbjct: 67  GADLIVYTAAIMSDNPELIAAKASGVKTVERC-ELLGLVTSWY-----NKAVCVSGTHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +  +             T                   +    +   S    H  
Sbjct: 121 TTTSSMLTHMYLAQN----VDLSTVIGGKLKAIGGSGRAGSSDVMVCEACEFSNTFLH-- 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +        N+  DH+D+ +T      A    F +          
Sbjct: 175 ---------------LFPNISIILNIDADHLDFFKTMDNLR-ASFTKFCDNTTDILVVNG 218

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             ++                         +    K  +        +    K       +
Sbjct: 219 DDENTMRAVKASGFDKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGSKIERISIHV 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NA+ A    +A G+    + + L        RFE + T   G  +  DYAH  
Sbjct: 279 PGAHNVLNAVAACAAALATGVTPENINKGLSTFWGAGRRFERLATIG-GITVVDDYAHHP 337

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   LK  + +    R+  V       R           AL++AD  ++T+     E 
Sbjct: 338 AEVAATLKTAKAMQDFKRVWAVHQPFTYSRTYTLMDDFAS-ALEIADKVVLTEIMGSREK 396

Query: 425 --PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  A++   IPG        E  R   +     D+++  G
Sbjct: 397 NTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESGDMIITLG 440


>gi|261346176|ref|ZP_05973820.1| FolC protein [Providencia rustigianii DSM 4541]
 gi|282565832|gb|EFB71367.1| FolC protein [Providencia rustigianii DSM 4541]
          Length = 429

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 105/376 (27%), Gaps = 31/376 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK +    ++ I   +GL          I    +             
Sbjct: 47  QPAPRVITVTGTNGKGTTCHTLESILMAAGLKVGVYSSPHLIRYTERVRIQGQELAESEF 106

Query: 172 KALSYLSSQGVTHVSVEASSHG------------LDQHRLDGIKLIAGSFTNLGRDHIDY 219
                       ++S+    +G            LD   L+         TN+  D    
Sbjct: 107 CQAFAAIEAQRGNISLTYFEYGTLAALQLFKQAALDIVILEVGLGGRLDATNVV-DADIA 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             T  A  +      +        A I+  D Y          +            F   
Sbjct: 166 AITSIALDHTDWLGSDREHIGYEKAGIFRQDHYGVVGEPDMPASIGEYADKIGTRLFRRG 225

Query: 280 KKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDS-----ALVL 333
           K      +    +   E + +     P         A+      + I  +         +
Sbjct: 226 KDWNYQEHGNHWSWESEQRSWQDLPLPNVPLANAATAMGVISCLMEIAPELTLKITDQAI 285

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGC 390
            H  +   +PGRF+ +G         +D AH  ++   ++  +  +      RI  V G 
Sbjct: 286 YHGLQTAQLPGRFQVIGE---NPLKILDVAHNPHAAGYLVTKLAQLPIVDGRRIRAVVGM 342

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
            GD+D             L+         P  E      A++   +    E  +   A +
Sbjct: 343 LGDKDIQG------TLQCLSKQVTDWYLAPLKEFRGADVAQLSQHLDDANEFDSVEAAWQ 396

Query: 451 TAIEMLNKQDVLVVAG 466
            A      QDV+VV G
Sbjct: 397 QACNDAQPQDVIVVCG 412


>gi|294101819|ref|YP_003553677.1| UDP-N-acetylmuramate/alanine ligase [Aminobacterium colombiense DSM
           12261]
 gi|293616799|gb|ADE56953.1| UDP-N-acetylmuramate/alanine ligase [Aminobacterium colombiense DSM
           12261]
          Length = 471

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 91/283 (32%), Gaps = 22/283 (7%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G        TN   DH++++ T  +   A    F      +   ++  +D     ++   
Sbjct: 178 GFHPNIAVLTNADWDHVNHYPTFDSVIEA-FGRFLVNPKDDGVVVLCGEDVGLTRILDEN 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--LPGEFQVYNALVA 318
           H     +              V  +          +   F       + G+  + NAL A
Sbjct: 237 HLKNEVITYGWGSAWDWGAYNVEHVPGGGVSFSVAKNGKFVDEVKLSVSGDHNIMNALAA 296

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +   + +   L+ + L+       R +++G ++ G  IY DY H    +   L  +  
Sbjct: 297 CVVADRLEVPFPLIKKTLKTFRGAKRRLQYIG-STNGMDIYDDYGHHPREIAATLNTLSQ 355

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI-----------AIVTDDNP-RSEDPE 426
           +   R + V        +        +  D AD+               D+ P    D  
Sbjct: 356 MFPERRLNVVFQPHRFSRT-----AAMYKDFADVLLLADRLFLLPVYGADEEPIEGIDSN 410

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I +E+ +      I   +  +A+    E + + DV+V  G G
Sbjct: 411 LIYSELQLRQYKNCILCSDMYDAVALLKESMEEGDVVVTVGAG 453


>gi|190572802|ref|YP_001970647.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia K279a]
 gi|229620424|sp|B2FNN8|MURC_STRMK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190010724|emb|CAQ44333.1| putative UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas
           maltophilia K279a]
          Length = 478

 Score = 56.1 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 142/420 (33%), Gaps = 53/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLTAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---SIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++  DD     +  R                    + V    ++ + T+ +      + +
Sbjct: 224 VLCIDDPEVAALAARTPRHVMSYGMSPQADV--RAENVVQEGSRMRFTLRLPQGTSQEVV 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LE    V  RF    E    +    RI 
Sbjct: 282 LALPGRHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRII 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H  + LE +    R   + + +VV      R    R    K A  L+  D  ++++
Sbjct: 342 DDYGHHPSELEAVFAAARGGWADKRLVV-AFQPHRYSRTRDQFDKFAAVLSSVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKG 468
             P  E+P  I     H +   I    R E   +  A E+           D+L++ G G
Sbjct: 401 VYPAGEEP--IAGADSHALARAIRARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAG 458


>gi|319900364|ref|YP_004160092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
 gi|319415395|gb|ADV42506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
          Length = 444

 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 113/361 (31%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +GL+    G               
Sbjct: 94  EFAGRYTD---AKMVCITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGN----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +++   +  +E SS  LD   +   +       N+  DH+D +   
Sbjct: 140 ---SLALQV-----ATEKHDYYIIELSSFQLD--NMYRFRANIAVLMNITPDHLDRYDHC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +             +   I + DD     + +     G +     +           
Sbjct: 190 MQNYIDAKFRITRNQTPDDAFIYWNDDPI---IKRELAKHGLKAHLYPFASVKEDGAIAY 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               + ++   +          L G   +YN+L A       GI+   + + L     V 
Sbjct: 247 VEDGEIEINAPIAFNMEQEELALRGTHNLYNSLAAGISANLAGIEKEYIRKALSDFKGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++ T       V+   G D+      I  
Sbjct: 307 HRLEKVCDVRGIHFINDSKATNVNSCWYALQSMTT-----KTVLILGGKDKGNDYTEIED 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +    + +  +   N   E        +  G+P    +    +A+  A  +  K + ++
Sbjct: 362 LVREKCSALVYLGLHN---EKLHGFFDRL--GLPVADVQTGMKDAVDAAFRLAKKGETIL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|284039597|ref|YP_003389527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirosoma linguale
           DSM 74]
 gi|283818890|gb|ADB40728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirosoma linguale
           DSM 74]
          Length = 449

 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 119/363 (32%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++       + + +G +    G      +        
Sbjct: 96  EFAARYTK---ARLIGITGSNGKTTTTLLTYHLLKTAGFNVGLAGNIGDSFAE------- 145

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQT 222
                        + +    +  +E SS  LD       +L      N+  DH   Y+  
Sbjct: 146 ------------QVIADTYDYYVLELSSFQLDDM--YKTQLDVMVLLNITPDHLDRYNYE 191

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN-AGCRVLSVGYQGKFIHLKK 281
            Q Y  +K R+ +   P +S      +     E+ KR  +     +          +L  
Sbjct: 192 FQNYVASKFRILQNARPADSFIYFAENQPILDELAKRQPDVKKLPISLQSTPSPGGYLAD 251

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                  Q  + +++  +     P        N L A     ++G+ S  +   L+    
Sbjct: 252 GQLTAKTQTQSFAIQQSETPLRGPH----NALNMLAAILAAQSVGVTSEAIQAGLKTFQN 307

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              R E  GT +    I    A   +S+   L ++ T       +    G D+      +
Sbjct: 308 AAHRLEPAGTINGIQFINDSKATNVDSVFYALSSMDT-----PTIWIAGGQDKGNDYSQL 362

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              ++  +  +  +  DN       K+       +P   E  N  +AI   +E+    DV
Sbjct: 363 DALVSQKVKALICLGVDNH------KLVDYFGGKVPLIYETQNITDAIAKGLELGQSGDV 416

Query: 462 LVV 464
           +++
Sbjct: 417 VLL 419


>gi|110680531|ref|YP_683538.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter denitrificans
           OCh 114]
 gi|123361696|sp|Q163J1|MURC_ROSDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109456647|gb|ABG32852.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter denitrificans OCh
           114]
          Length = 468

 Score = 56.1 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 97/313 (30%), Gaps = 24/313 (7%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +    S         + VEA       +RL          TN+  +H+++          
Sbjct: 148 IHAYGSNARKGEGEWMVVEADESDGTFNRLPATI---AIVTNIDPEHMEHWGDFDTLRQ- 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    A+   D    + ++ +  +          Q     +    A     
Sbjct: 204 GFLDFVSNIPFYGVAVCCTDHPEVQALVGKITDRRVITYGFNAQADVRAVNLRYAGGVAY 263

Query: 290 QVTISVEGKDFD--FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                            P+PG+  V NAL A  +   +G+ + ++   L     V  RF 
Sbjct: 264 FDVALQAEGTVIEGCSLPMPGDHNVSNALSAIAVARHLGMKAEVIKTALAAFGGVNRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            VG    G  I  DY H    +  +LK  R  T GR+I V      R      +      
Sbjct: 324 RVG-EIDGVTIIDDYGHHPVEIAAVLKAARQATEGRVIAV--HQPHRYSRLSSLFDDFCA 380

Query: 408 DL--ADIAIVTDDNPRSED--PEKIRAEIIHGI--------PGFIEKGNRIEAIRTAIEM 455
               AD+  + +     ED  P   R +++ G+           + + +     R   E 
Sbjct: 381 CFNDADVVGIAEVYAAGEDPIPGAGRDDLVAGLIRHGHRHARAVVGEDDLE---RLVREQ 437

Query: 456 LNKQDVLVVAGKG 468
               D++V  G G
Sbjct: 438 TRPGDMVVCLGAG 450


>gi|300214728|gb|ADJ79144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus
           salivarius CECT 5713]
          Length = 458

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 96/267 (35%), Gaps = 20/267 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +          TN+   HIDYH T++ Y NAKMR+       +   + + D+   +E+ +
Sbjct: 177 ITEYHPKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQTENDYFVVNW-DNEEWQELSQ 235

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R+         +G      ++      + + ++      K       +PG   V NAL A
Sbjct: 236 RSKAKIVPFSRLGKSKDGAYVADGYLFYKEDKIMPVDNIK-------VPGTHNVENALAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +    G  +  + E L     V  R ++V T +         A    + E  L     
Sbjct: 289 IAVAKIFGKSNEDIKEVLTTFSGVRHRTQYVTTLNGRKFYNDSKATNMEATEKALAGF-- 346

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIP 437
                 +V+   G DR      +   +   +  + +        E  + +       G+ 
Sbjct: 347 ---NNTVVLLAGGLDRGFTFEKLEPSLKNKVHAMIVF------GETADLMAKAGKEAGVE 397

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I+  + + A+  A ++ N+ DV+++
Sbjct: 398 KIIKTKDAVSAVPEAYKVSNEGDVILL 424


>gi|299533120|ref|ZP_07046505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
 gi|298718897|gb|EFI59869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
          Length = 634

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 124/418 (29%), Gaps = 55/418 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A    V  A            +     +   R+            +   +L +TGT+GK+
Sbjct: 212 ASVASVFDAARSIGLPTGGELDLFAFALKGLREAHG---------YAPKVLGITGTNGKT 262

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S   Q+ +  GLS    G            R+       L                +
Sbjct: 263 TVTSLTGQLLEHGGLSVGVAGNIGPSLLDTLSARI---DAETL-----------PQAWVL 308

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK-----ES 242
           E SS  LD  R  G +  A +  N+ +DH+D+H   QAY +AK  +F E         + 
Sbjct: 309 ELSSFQLDDCR--GFEPTAATVLNITQDHLDWHGGMQAYADAKAHVFGEQALMVLNREDP 366

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +       +    +        V   G   +      +  ++    +  + E  +   
Sbjct: 367 VVMAMLPAPVAVPGKRGKTFQRAHVSFGGDMPRRPGDFGLEVVNGMTWLVRAHEADETSK 426

Query: 303 LFP----------------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                              + G     NAL A  L    G   A +L  L +    P R 
Sbjct: 427 GKNADDLHIVRLMPADALRIRGRHNAINALSALALATGAGCTLAPLLYGLREYRGEPHRV 486

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           + VG                 +       +  +     IVV   G  + Q   P+     
Sbjct: 487 QPVGRVGDVEYFDDSKGTNVGATVA---ALMGLGPDHRIVVILGGLGKGQDFTPL-AAPV 542

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 A++       +D   IR  +       ++     +A++ A  + +  D +++
Sbjct: 543 SRYVRAAVLI-----GQDAPLIREALGDTGVTLVDAATMQDAVQQAARLAHANDAVLL 595


>gi|154509041|ref|ZP_02044683.1| hypothetical protein ACTODO_01558 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798675|gb|EDN81095.1| hypothetical protein ACTODO_01558 [Actinomyces odontolyticus ATCC
           17982]
          Length = 463

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 98/270 (36%), Gaps = 12/270 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D + +++ +       F   +      +  A+D  +  + + A   G RV
Sbjct: 179 IVTNVEPDHLDRYHSREEFEG-IFVEFARRMVPGGLLVTCAEDEGAVRLAQSARAEGLRV 237

Query: 268 LSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           ++ G          + +  V    +    +++           +PGE  V NA  A    
Sbjct: 238 VTYGRRERSLCTPDVVIADVRVEAHGAGASLTWGELSASLALSVPGEHNVLNAAAAWVAG 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
           I  G+    + + L +      RFE  G      R++ DYAH    +E  ++    +   
Sbjct: 298 IECGLSPQAIADGLGEFTGAARRFEARGQ-VGSRRLFDDYAHHPTEVEAAIREAHVVAGE 356

Query: 382 GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPG 438
           G + VVF      R +       + AL  AD  ++       EDPE       I   I G
Sbjct: 357 GDVTVVFQPHLYSRTRIFAERFAQ-ALSGADHVVLAGIYGAREDPEPGVDSSLISSRIEG 415

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +  EA R A  +  +  V +  G G
Sbjct: 416 AFYVEDMHEAARLAASLTPEGGVCLTMGAG 445


>gi|298369208|ref|ZP_06980526.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298283211|gb|EFI24698.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 425

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 111/394 (28%), Gaps = 31/394 (7%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+  +    ++ V GT+GK SV +++ QI  ++G     +     +    +
Sbjct: 24  LERVGEVKKRMGLQPQCPVVVVAGTNGKGSVCAYLSQIYTQAGFKVGTLTSPHLLRYNER 83

Query: 159 DNRLTTP--SP---------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
               T P                   I L        +     +  +     L+     R
Sbjct: 84  IAVNTRPVEDAAIVASFERIEAARAGISLTYFEFNTLAAVDIFIREKVDVMVLEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD + +       +    +D+                 +     PAI             
Sbjct: 144 LDAVNVFDADCAVVTSVDLDHQAFLGDTVEQVAFEKAGVFRSGKPAICGQTPPPESLRRH 203

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                   +L               +     Q +           FP        +    
Sbjct: 204 AGEIGAELLLIKRDFDFSTLENVQWSYRYHPQNSDGRTRNRNALPFPALRGAYQLSNAAC 263

Query: 319 AGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A   +    D        ++    L   PGRF+ +          +D  H  ++   + +
Sbjct: 264 ALTVLECLGDRLPVDIAAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRR 320

Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI- 432
           ++  +    +   VF    D+D      + K      +  I   D PR    E +  ++ 
Sbjct: 321 SLINLMFAEKRTAVFSILADKDIDGVLDIVK--DQFDEWHIAPLDVPRGMTAEALVRKLS 378

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            HGI       N  +A R A+E   + D +VV G
Sbjct: 379 EHGIENVKVFENIEKAYRAALEKAGENDRIVVFG 412


>gi|296112263|ref|YP_003626201.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis RH4]
 gi|295919957|gb|ADG60308.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis RH4]
          Length = 460

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 107/360 (29%), Gaps = 28/360 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++  + +  I Q SG+ +        +     D+R      + LA 
Sbjct: 101 KDRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGF--LIGGVPLVNTDDRR-----LSLAF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAK 230
             S    +    +  +         R   +     +    NL  DH D      A     
Sbjct: 154 QHSSYLGKQFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQF 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +   +  K    I     +    + K       R    G       L           
Sbjct: 214 HHMIRMIPSKGQIIIPANTPSLETTLDKGVWTTVVRTSLNGDAEWQAKLDANDGSSFW-- 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +          + + G   V NAL A      +G+   +    L     +  R E +G
Sbjct: 272 --VHHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVKMACTALSHFGGIKRRMELIG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIAL 407
            +     ++ D+AH   ++   L    + +T  RI  +     +  +    RP +   A 
Sbjct: 330 -DVDDILVFDDFAHHPTAISTTLDGAKKRLTPRRIWAIIEPRSNTMKLGSHRPHLAASAA 388

Query: 408 DLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +AD  I         +P+ +     E I   P      +    I          D +++
Sbjct: 389 -IADQVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIII 440


>gi|294787902|ref|ZP_06753146.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
 gi|294484195|gb|EFG31878.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
          Length = 470

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 142/428 (33%), Gaps = 61/428 (14%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
           QGA+ +V S+A    +    A +  + P++     R   L+           +N +A+ G
Sbjct: 63  QGAQVVVTSTAIRADNPEVLAALEQHIPVI----PRAMMLAELMRF------KNGIAIAG 112

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    +   +G   +F IG    +++   + +L + + I      S  S   
Sbjct: 113 THGKTTTTSLTASVLGAAGLDPTFVIG--GKLTAAGTNAKLGSGNYIVAEADESDASFLY 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +  +    TN+  DH+D +  +          F   +P  
Sbjct: 171 --------------------LSPVFTVVTNIDEDHMDTYDHKIDKLYQAFTDFIHRMPFY 210

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-- 299
             A +  D A+ + ++       C            +   + AI ++ + T  +  +   
Sbjct: 211 GKAFLCVDSAHVRNILPEIKRPYCTYSISDETADI-YATNILAIGSQMKFTAHIRQQKNN 269

Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
               FD +  +PG   V NAL + G+ +   +    +   L     V  RF+  G  +  
Sbjct: 270 EPLVFDVVLNIPGVHNVCNALASIGVALECKVPVDAIQAGLAGFSGVGRRFQSYGEMNLP 329

Query: 356 GR----IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
                 +  DY H    +   L   R        +V      R    R ++   +  L  
Sbjct: 330 QGGKALVIDDYGHHPVEMAATLAAARGAYPDNR-LVLAFQPHRYTRTRDLIDDFSAILST 388

Query: 410 ADIAIVTDDNPRSEDP---------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           AD  ++T+     E P          +I      G    I   +      T +  L   D
Sbjct: 389 ADFLMLTEVYAAGEQPIPHADGRSLARIVRA--RGKVEPIFCEDVNLIPETLLPFLQDGD 446

Query: 461 VLVVAGKG 468
           V++  G G
Sbjct: 447 VILTMGAG 454


>gi|227891044|ref|ZP_04008849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
 gi|227867133|gb|EEJ74554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
          Length = 458

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 96/263 (36%), Gaps = 20/263 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+   HIDYH T++ Y NAKMR+       +   + + D+   +E+ +R+  
Sbjct: 181 HPKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQTEDDYFVVNW-DNEEWQELSQRSKA 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +G      ++      + + ++    + K       +PG   V NAL A  + 
Sbjct: 240 KIVPFSRLGKSKDGAYVADGYLFYREDKIMPVDDIK-------VPGTHNVENALAAIAVA 292

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G  +  + E L     V  R ++V T +         A    + E  L         
Sbjct: 293 KIFGKSNEDIKEVLTTFSGVRHRTQYVTTLNGRKFYNDSKATNMEATEKALAGF-----N 347

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIPGFIE 441
             +V+   G DR      +   +   +  + +        E  + +       G+   I+
Sbjct: 348 NPVVLLAGGLDRGFTFEKLEPSLKNKVHAMIVF------GETADLMAKAGKEAGVEKIIK 401

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464
             + + A+  A ++ N+ DV+++
Sbjct: 402 TKDAVSAVPEAYKVSNEGDVILL 424


>gi|315125601|ref|YP_004067604.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
 gi|315014114|gb|ADT67452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
          Length = 444

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 124/395 (31%), Gaps = 53/395 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S    L+  +     N  + V+ +         +R+  K    ++AVTG++GKS+V 
Sbjct: 75  IIISPGLGLKTPAVAKAINAGVEVIGDV-----ELFARINSKP---VVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +   ++ + +G      G   T      D                           +E S
Sbjct: 127 TLAYEVLKTAGYKVALGGNIGTAVLDLLDG--------------------DFDVFVLELS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD  R   +K  + +  N+  DH+D + + QAY ++K+ ++                
Sbjct: 167 SFQLDTTR--SLKTTSATVLNISEDHLDRYDSYQAYIDSKLSIYNGAEHLVINVDDIQTH 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             S+ +  +      +      Q        V         T++V GK            
Sbjct: 225 PVSRTLAPQLSFGETQGDYHLAQHNNEAHFMVKDEAYLPVSTLAVVGK-----------H 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L    L     I  A     L + + +  R +FVG  +         A    +  
Sbjct: 274 NYLNTLAVMALLSPFTITKAHYKTALAQFNGLAHRCQFVGEFNDVKYFNDSKATNVGATI 333

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
                I ++   +  +V   GGD       ++           I    +           
Sbjct: 334 A---AIDSLAGEQQNLVVIAGGDAKGADLEVLKPYIEKHVKALICFGKD---------AK 381

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +++          N  EA+  A ++    D +++A
Sbjct: 382 DLVALSAKGHLTNNMSEAVALAKQLSKSGDTVLLA 416


>gi|282850550|ref|ZP_06259929.1| bifunctional protein FolC [Veillonella parvula ATCC 17745]
 gi|282580043|gb|EFB85447.1| bifunctional protein FolC [Veillonella parvula ATCC 17745]
          Length = 435

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 45/157 (28%), Gaps = 7/157 (4%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
              +    L       S   +          GRFE             D AH +   E  
Sbjct: 265 CALMAVRLLMKEDTNISEETMREGFARTTWAGRFEVKRGL--DRTFIFDGAHNAAGAESF 322

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                         VV     D+DQ    I+ ++      + +V     R+E PE +   
Sbjct: 323 AMTYNELFKDTPKTVVMAILKDKDQE--AIIREVVKSGDTVLVVPAPTDRTEVPENLVEV 380

Query: 432 IIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I   +P        +   A+  A +     D++ V G
Sbjct: 381 IRRTVPKVTAQTAESVEAALALAYKHTKTGDIIAVCG 417


>gi|297544895|ref|YP_003677197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842670|gb|ADH61186.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 454

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 99/300 (33%), Gaps = 20/300 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + + +     +  E SS  L+   +   K       N+  DH++ H+T + Y 
Sbjct: 143 IGYPLIYAVMEASEDAFIVAEISSFQLET--IKEFKPKISCIINITPDHLNRHKTFENYR 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K R+FE     E   + + DD  +  +  +A                 ++K       
Sbjct: 201 DIKGRIFENQRENEYTVLNF-DDPVTWSLKNKAKCRVFPFSRKNSLENGAYVKNGSIY-- 257

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              V  + +         +PGE  + NAL A+ +    GI   ++   L+    V  R E
Sbjct: 258 -ISVDKNAKKIIDIEEIYIPGEHNLENALAASSVAYLSGISVDVIANTLKTFKGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++ ++       IV+   G D+         K   
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQALKP-----PIVLIAGGYDKGSEF-DEFVKAFN 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       +  +KI+             +      EA++ A E   + D +++
Sbjct: 371 GKVKKLILI-----GQTAKKIKDTAKKYYYPEDDILFADTLEEAVKKAYESAKEGDSVLL 425


>gi|33239474|ref|NP_874416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|44888179|sp|Q7VEJ1|MURC_PROMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33236999|gb|AAP99068.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 472

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 14/227 (6%)

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +   +      + K +         Y    +++A        S              
Sbjct: 195 HTDYYTNIDSLINTIKKFTKNCKKIVANYDCNNLRKACPDKTIWWSTNEFKNINFAAIPK 254

Query: 284 AIHNKQQVTISVEGKDFDFLFPL--PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            ++ +  +    E   +     +  PG   + N L A   C +  I+ + +  H+  L  
Sbjct: 255 IMNGQITLASYYENGKYIDDISISLPGVHNLNNTLGAIAACRSADINFSDIKPHVSSLKC 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--------IVVFGCGGD 393
              RF+F G   +G +I  DYAH  + +   L   R + + +          +V      
Sbjct: 315 PERRFQFKG-IWKGRQIVDDYAHHPSEIRETLSMARLMINTKKSILPMAADRIVVIFQPH 373

Query: 394 RDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK-IRAEIIHGIP 437
           R    R ++ + A +L  AD+ I+T      E+P K I +E +    
Sbjct: 374 RYSRTRDLITEFAKNLGAADLVILTPIYSAGEEPIKGITSEKLKSCT 420


>gi|53803428|ref|YP_114842.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
 gi|59798159|sp|Q604V8|MURC_METCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53757189|gb|AAU91480.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
          Length = 472

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 90/280 (32%), Gaps = 14/280 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+ +DH+  +             F   +P    A++ A+D   ++++ R 
Sbjct: 176 HLQPMIAVVTNIDQDHMGTYGNDFGRLKDAFVEFLHHVPFYGAAVLCAEDPGVRDILPRL 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                R            +         +   +    +  +    LPG   + NAL A G
Sbjct: 236 SK-PYRTYGEREGVDIRAVGIQRLGLQSRFSVLRQGAEPLEITLNLPGYHNILNALAAIG 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR 377
           +   +G+  A++   L     +  RF+     + G        DY H  + L   L + R
Sbjct: 295 VATELGVADAVIQRALAGFRGIGRRFQINACLNFGDGEITFVDDYGHHPSELAATLDSAR 354

Query: 378 TITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
                R +VV        R +       ++     D+ I+ +     E P        + 
Sbjct: 355 NAWPDRRLVVVFQPHRYTRTRDLFEDFVQVLSR-VDVLILLEVYSAGEAPIAGADGRSLS 413

Query: 430 AEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I   G    I      E       +L   DV++  G G
Sbjct: 414 RAIRVRGQIDPIFAETPEEVFDILPNVLKPGDVVMTLGAG 453


>gi|294792175|ref|ZP_06757323.1| tetrahydrofolate synthase [Veillonella sp. 6_1_27]
 gi|294457405|gb|EFG25767.1| tetrahydrofolate synthase [Veillonella sp. 6_1_27]
          Length = 435

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 45/157 (28%), Gaps = 7/157 (4%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
              +    L       S   +          GRFE             D AH +   E  
Sbjct: 265 CALMAVRLLMKEDTNISEETMREGFARTTWAGRFEVKRGL--DRTFIFDGAHNAAGAESF 322

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                         VV     D+DQ    I+ ++      + +V     R+E PE +   
Sbjct: 323 AMTYNELFKDTPKTVVMAILKDKDQE--AIIREVVKSGDTVLVVPAPTDRTEVPENLVEV 380

Query: 432 IIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I   +P        +   A+  A +     D++ V G
Sbjct: 381 IRRTVPKVTAQTAESVEAALALAYKHTKTGDIIAVCG 417


>gi|288563201|pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
           Glutamate (Murd) Ligase From Streptococcus Agalactiae To
           1.5a
          Length = 451

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 127/389 (32%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y+       +    P+L    T   L+   S         ++ +TG++GK++  + + +
Sbjct: 83  PYNNPXVKKALEKQIPVL----TEVELAYLVSE------SQLIGITGSNGKTTTTTXIAE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G      G     +S                      ++     +  E SS  L 
Sbjct: 133 VLNAGGQRGLLAGNIGFPASEVV------------------QAANDKDTLVXELSSFQLX 174

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +   +      TNL   H+DYH + + Y  AK  +  +    +   + +       +
Sbjct: 175 --GVKEFRPHIAVITNLXPTHLDYHGSFEDYVAAKWNIQNQXSSSDFLVLNFNQ--GISK 230

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            + +   A     S   +    +++     +  + +    +         +PG   V NA
Sbjct: 231 ELAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIXSVDDIG-------VPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    GI + ++ E L     V  R + +G            +     +    K 
Sbjct: 284 LATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN---ILATQKA 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +    + ++I++   G DR      ++  I   L    ++       E   +++      
Sbjct: 341 LSGFDNTKVILI-AGGLDRGNEFDELIPDITG-LKHXVVL------GESASRVKRAAQKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +  +A+  A E+  + DV+++
Sbjct: 393 GVTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|229032111|ref|ZP_04188089.1| Folyl-polyglutamate synthetase [Bacillus cereus AH1271]
 gi|228729201|gb|EEL80199.1| Folyl-polyglutamate synthetase [Bacillus cereus AH1271]
          Length = 433

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 110/387 (28%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L    +      K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMDKHFTALHKQSSEEGEQFDFTCPFATFEDLRISMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--- 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSKKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIGENDVFIITG 417


>gi|291288102|ref|YP_003504918.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885262|gb|ADD68962.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 465

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 126/399 (31%), Gaps = 48/399 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKH 113
           GH +     A+GA+ +V SSA    +       +   P++        L           
Sbjct: 59  GHRYEN---AEGADVVVYSSAVRETNPELVCAKDNFIPVIKRGEMLAELMRL-------- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +A++G+ GK++  S V +I   + L    +     +++   +  L + + I     
Sbjct: 108 -KYSIAISGSHGKTTTTSMVAEILNAAKLDPTVV-VGGILNTKDTNATLGSGNVIV---- 161

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               + +      + + S  L               TN+  +H D ++  +         
Sbjct: 162 --AEADESDRSFLLMSPSVAL--------------VTNIDFEHPDTYRDLEDVKRTFADF 205

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               +P    A++  +D  + +++                       +      +  V I
Sbjct: 206 ISR-VPFYGSAVLCLEDDNTADLIPLIDRRFVTYGFRAQADVHGVNVEQKGFSMQFDVII 264

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S E K        PGE  V NAL A  +     I    +   LE    V  R      + 
Sbjct: 265 SGE-KAGRIKLGFPGEHNVLNALGAIAVATQFDIPFRTIKRALEGFKGVQRRL-TSRYDD 322

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
               +  DY H    ++  LK +R     + I+         +    +M + A     AD
Sbjct: 323 GECIVMDDYGHHPTEIKTTLKAVRGAYPDKKILAIFQPHRYSRTA-ALMKEFATAFFDAD 381

Query: 412 IAIVTDDNPRSE------DPEKIRAEII-HGIPGFIEKG 443
           +  +TD    SE      D E +  EI   G        
Sbjct: 382 MLFITDIYAASEEKIDGVDSEAMVKEIKTRGFKNVKYIP 420


>gi|291619056|ref|YP_003521798.1| Mpl [Pantoea ananatis LMG 20103]
 gi|291154086|gb|ADD78670.1| Mpl [Pantoea ananatis LMG 20103]
 gi|327395390|dbj|BAK12812.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase Mpl [Pantoea ananatis AJ13355]
          Length = 455

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 102/357 (28%), Gaps = 32/357 (8%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              +LAV GT GK++ A     I +  G    F IG        +     +    I   +
Sbjct: 106 DRWVLAVAGTHGKTTTAGMAAWILEACGLEPGFIIGGVPGNFDVSAKLGKSPFFVIEADE 165

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D     +A       
Sbjct: 166 YDCAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDLRAIQ----- 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+    GC               K       +   
Sbjct: 206 KQFHHLVRIVPGQGKILLPEHDHNLKQVMAMGCWSEQEHVGDGGHWQAKKLTPDASRWEV 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    K  +  + L GE  ++N L+A      +G+      + L+       R E  G  
Sbjct: 266 LLAGEKVGEVNWGLVGEHNMHNGLMAIAAARHVGVKPEDASQALDSFINARRRLELRG-E 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDR---DQGKRPIMGKIAL 407
             G +IY D+AH   ++   L  +R+   G  RI+ V     +       K  +   +A 
Sbjct: 325 VNGIKIYDDFAHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKMGVNKNELAPSLA- 383

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD   +      S  P ++       +       +    + T  +     D ++V
Sbjct: 384 -RADEVFLFQP---SHIPWQVADVAEACMQPAHCSADIDTLVETIAKTAQPGDSILV 436


>gi|293392858|ref|ZP_06637176.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
 gi|291424717|gb|EFE97928.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
          Length = 491

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 136/424 (32%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A    +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAIPSDNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +             F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF- 302
           A++  DD   +E++ R                   ++       +   T+S + K     
Sbjct: 227 AVMCIDDPVVRELLPRVGRHVTTYGFSDDADV--RIESYSQRGPQGHFTLSRQDKPLMTV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------ 356
               PG     NA  A  +    GID   +L  L        RF+F+G            
Sbjct: 285 TLNAPGRHNALNAAAAVAVATEEGIDDDDILRALAGFQGTGRRFDFLGEYPLTPVNGKAG 344

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DI 412
              +  DY H    ++  +K  R     +  +V      R    R +    A  L+  D+
Sbjct: 345 SAMLVDDYGHHPTEVDATIKAARAGWPDKR-LVMIFQPHRYTRTRDLYDDFANVLSQVDV 403

Query: 413 AIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++ D  P  E P        +   I   G    I   +      T  ++L   D+++V 
Sbjct: 404 LLMLDVYPAGEAPIPGADSRSLCRTIRNRGKLDPILVSDADTVPETLAQLLQNDDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|5834369|gb|AAD53935.1|AF179611_19 UDP-N-acetylmuramate-alanine ligase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 123/372 (33%), Gaps = 45/372 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA    +          I VV   R+   L+           ++ +AV GT G
Sbjct: 68  AAVVVVSSAIHRGNPEVEAALENRIPVV---RRAEMLAELMRL------KSTVAVAGTHG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    G+    I     I+S+  + RL                      +
Sbjct: 119 KTTTTSMVAALLDAGGIDPTVI-NGGIINSYGSNARLGDSD-----------------WM 160

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            VEA        RLDG        TN+  +H+D++ + +   +A    F   +P    A 
Sbjct: 161 VVEADESDGSFLRLDGTL---AIVTNIDPEHLDHYGSFEKVQDA-FVEFVSNVPFYGAAF 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDF 300
           +  D    + ++ R  +          Q     +         +   +         +  
Sbjct: 217 LCIDHPVVQSILPRIRDRRLITYGFSAQADIRAVDITPISGGNRFTAVIRGRDGDIRRIE 276

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-- 358
           +   P+PG   + NAL A G+ +   I  A + +   +   V  RF  VG          
Sbjct: 277 NIFLPMPGRHNIQNALSAIGVALEFSIPDAAIRDGFARFGGVKRRFSRVGEIKICDGSVL 336

Query: 359 -YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIV 415
              DY H    ++ +L   R     R+I V      R      +M +   A + AD+  V
Sbjct: 337 VIDDYGHHPVEIKAVLSAARESAQQRVIAVV--QPHRFLRLHDLMTEFQSAFNDADMVFV 394

Query: 416 TDDNPRSEDPEK 427
                  E P  
Sbjct: 395 APVYAAGEQPIA 406


>gi|326561773|gb|EGE12108.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis 7169]
          Length = 460

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 106/360 (29%), Gaps = 28/360 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++  + +  I Q SG+ +        +     D+R      + LA 
Sbjct: 101 KDRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGF--LIGGVPLVNTDDRR-----LSLAF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAK 230
             S    +    +  +         R   +     +    NL  DH D      A     
Sbjct: 154 QHSSYLGKQFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQF 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +   +  K    I     +    + K       R    G       L           
Sbjct: 214 HHMIRMIPSKGQIIIPADTPSLETTLDKGVWTTVVRTSLNGDAEWQAKLDANDGSSFW-- 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +          + + G   V NAL A      +G+   +    L     +  R E +G
Sbjct: 272 --VHHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIAL 407
            +     ++ D+AH   ++   L    + +   RI  +     +  +    RP +   A 
Sbjct: 330 -DVDDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAA 388

Query: 408 DLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +AD  I         +P+ +     E I   P      +    I          D +++
Sbjct: 389 -IADQVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIII 440


>gi|288574849|ref|ZP_06393206.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570590|gb|EFC92147.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 453

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 93/290 (32%), Gaps = 19/290 (6%)

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             + +      +E SS  L     +  +      TN+  DHID+H + + Y +AK +   
Sbjct: 148 DFAGERRDVFVIELSSFQLHW--TEKSEFDISVITNIAPDHIDWHGSYENYISAKKKAIS 205

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    +   D +                  +   G FI+ ++  A+    +  + +
Sbjct: 206 HRRDTGWSIVQEKDRSLLGGQSDPRTIGLTLENDLKKDGIFINNERAIAVIEGVRHDLFM 265

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +      PL G   + NA +AA  CI            L      P R +F+      
Sbjct: 266 SKQ-----VPLLGGHNIENAAMAATACILSSSRKIDWSMGLASYQAPPHRCQFIVEKDGI 320

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             +          +      +R+I  G+  VV   G  + +  R  +     D    AI+
Sbjct: 321 SYVDDSKGTN---VASTCTALRSIPGGK--VVILGGKGKGENYR-ELALAVKDNCRYAIL 374

Query: 416 TDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  E+   I   +    +  +    +  EA+  A     + D +++
Sbjct: 375 -----LGEERFAIADALKEQNVTDWQMVESMEEAVVKASRRAKRGDTVLL 419


>gi|218290829|ref|ZP_03494898.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239187|gb|EED06388.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 432

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 104/386 (26%), Gaps = 32/386 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            +   + +       V GT+GK SV + +  +    G  +             +      
Sbjct: 29  LSKLDHPESDLCFYHVAGTNGKGSVCAMLAAMLTALGYRTGLYTSPGLGGFNGRVAIDGV 88

Query: 165 P-------SPIYLAKALSYLSSQGVTHVSVEA------SSHGLDQHRLDGIKLIAGSFTN 211
           P         +   +  S  S        + A       S G+++   +         TN
Sbjct: 89  PIAEPEFAEYVEAVRRASDTSDPPTEFEVLTAVALLAFRSAGVERVVWETGLGGRLDATN 148

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+             +      + +E   I+             A+    R  +  
Sbjct: 149 VVWPHVTAITNVSHDHVEILGPTLVDIAREKAGIVKPGVPVVTACADGAYRVIERTAARR 208

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-------AAGLCIA 324
                   + V        V +    +      P                   A      
Sbjct: 209 GSRLVSVGRDVQFTITGAGVRLRGAYRGLFRDAPSVRLGLCGEHQAQNATVSLAMLELGE 268

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR- 383
             I  A     L  L  V         N  G  I +D AH       + + +R +  G  
Sbjct: 269 GRIAEANWERALASLESVRWPLRCEVFNLGGRLIVIDGAHNEEGARTLARALRRLGKGVG 328

Query: 384 ---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA---EIIHGIP 437
                +VF    D+D   R +  ++     D  +V   +PR  DP  + A   EI   + 
Sbjct: 329 ANGWRMVFAAFADKDV--RGMFAQMLPLACDALMVRSPHPRGADPRALAALACEIRPDLS 386

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 +  +A++ A++      ++V
Sbjct: 387 -IHVMSSIEDAVQEALDHPEP--IVV 409


>gi|326577894|gb|EGE27758.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Moraxella catarrhalis O35E]
          Length = 460

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 106/360 (29%), Gaps = 28/360 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              ++LAV GT GK++  + +  I Q SG+ +        +     D+R      + LA 
Sbjct: 101 KDRHVLAVAGTHGKTTTTTMLAWILQFSGIDTGF--LIGGVPLVNTDDRR-----LSLAF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAK 230
             S    +    +  +         R   +     +    NL  DH D      A     
Sbjct: 154 QHSSYLGKQFFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFADLDAIQTQF 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +   +  K    I     +    + K       R    G       L           
Sbjct: 214 HHMIRMIPSKGQIIIPADTPSLETTLDKGVWTTVVRTSLNGDAEWQAKLDANDGSSFW-- 271

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +          + + G   V NAL A      +G+   +    L     +  R E +G
Sbjct: 272 --VHHNNTSAMVRWSMSGLHNVNNALTAIAAAHHVGVSVEMACTALSHFGGIKRRMELIG 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIAL 407
            +     ++ D+AH   ++   L    + +   RI  +     +  +    RP +   A 
Sbjct: 330 -DVDDILVFDDFAHHPTAISTTLDGAKKRLAPRRIWAIIEPRSNTMKLGSHRPHLAASAA 388

Query: 408 DLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +AD  I         +P+ +     E I   P      +    I          D +++
Sbjct: 389 -IADQVI-------WYEPQGLTWGLKEAIGSTPNQRVLDSINAIIEHIKTYAKAGDAIII 440


>gi|260591745|ref|ZP_05857203.1| UDP-N-acetylmuramate--alanine ligase [Prevotella veroralis F0319]
 gi|260536029|gb|EEX18646.1| UDP-N-acetylmuramate--alanine ligase [Prevotella veroralis F0319]
          Length = 459

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 107/351 (30%), Gaps = 40/351 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L   GT GK++ ++    I  +S L         + +             + +    
Sbjct: 112 HKGLCFAGTHGKTTTSTMCAHIMHKSHLDCNAFLGGISKNYGTNYILSDHSDYVVIEADE 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S                       ++      T+   DH+D + T++AY  +     
Sbjct: 172 FDRSFHW--------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E + P  +  I    +      MK+    G +V     +    H + +            
Sbjct: 212 ELIQPGGALIIHKNLE------MKQHVQEGVKVYDYSREEGDFHAENIRIEKGTITFDFV 265

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              +         P    + N + A  +    G  +  + E +     V  RF+F   N 
Sbjct: 266 SPIETVKDVELGQPIPINIENGIAAMAMAQLNGCTAEELREGMRTYGGVDRRFDFKIKND 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLAD 411
           R      DY H    +    K+++ + + R I V        R +         AL   D
Sbjct: 326 R-HVFLSDYGHHPKEILQSAKSLKELYADRKITVIFQPHLYTRTRDFYKDFAD-ALSHFD 383

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             I+T+  P  E P       I G+   +   N    I  A +M+ K DVL
Sbjct: 384 EVILTEIYPAREQP-------IEGVTSKLIYDNLRPNI--AKQMIKKDDVL 425


>gi|87199446|ref|YP_496703.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135127|gb|ABD25869.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 475

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 47/143 (32%), Gaps = 21/143 (14%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +  RF+ VGT++ G  +  D+ H    +   L  ++    GR+I  F   G    G 
Sbjct: 322 FEGLARRFDIVGTSASGVTVIDDFGHNPEKVGATLSTLKAHP-GRVIAFFQPHG---YGP 377

Query: 399 RPIMGKIALD-------------LADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
              MG    +             L D      T D  RS   E+I   I           
Sbjct: 378 LRQMGAELAEVMARTLDANDISVLCDPVYFGGTVD--RSVGSERIVDLIRSHGGKAEYIA 435

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
            R +      ++    D +V+ G
Sbjct: 436 ERTDCATRIAQLARPGDRVVIMG 458


>gi|160896915|ref|YP_001562497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
 gi|160362499|gb|ABX34112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
          Length = 650

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 120/385 (31%), Gaps = 48/385 (12%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            L   ++    +    +L +TGT+GK++V S   Q+ + +GL     G            
Sbjct: 254 ALKALSAAHGYRP--TVLGITGTNGKTTVTSLTGQLLEHAGLRVAVAGNIGP-------- 303

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             T    +      +  +        +E SS  LD   +   +  A +  N+ +DH+D+H
Sbjct: 304 --TLLDTLT----QAIDAETLPQAWVLELSSFQLD--GVQMFEPTAAAVLNITQDHLDWH 355

Query: 221 QTQQAYFNAKMRLF---------------EELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            + +AY +AK  +F                 +LP              +  +    +   
Sbjct: 356 GSLRAYADAKACIFGSSGTMVLNREDPEVMRMLPAPVVPPGKRQKPQQRAHITFGGDMPR 415

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA------ 319
           R    G +        V A    +          +          ++     A       
Sbjct: 416 RPGDFGLEVVSGMTWLVRAHEADETAKGKNAEDLYIQRLMPADALRIRGRHNAINALSAL 475

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  A G   A +L  L +    P R + +G  +              +       +  +
Sbjct: 476 ALASAGGCTLAPLLYGLREYRGEPHRVQPIGRVNGVEYYDDSKGTNVGATVA---ALSGL 532

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
                IVV   G  + Q   P++  +       A++        D  +IRA +       
Sbjct: 533 GPDHRIVVILGGDGKGQDFSPLVAPV-SRHVRTAVLI-----GRDAGRIRAALQDCGVPL 586

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++     +A+  A    ++ D +++
Sbjct: 587 VDATTMADAVELAASRAHEGDAVLL 611


>gi|22127499|ref|NP_670922.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis KIM 10]
 gi|45443360|ref|NP_994899.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809536|ref|YP_653452.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua]
 gi|108810587|ref|YP_646354.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516]
 gi|145600341|ref|YP_001164417.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides
           F]
 gi|162418996|ref|YP_001607294.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Angola]
 gi|21960596|gb|AAM87173.1|AE013964_9 UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis KIM 10]
 gi|45438229|gb|AAS63776.1| UDP-N-acetyl-muramate:alanine ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774235|gb|ABG16754.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Nepal516]
 gi|108781449|gb|ABG15507.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Antiqua]
 gi|145212037|gb|ABP41444.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis Pestoides
           F]
 gi|162351811|gb|ABX85759.1| UDP-N-acetylmuramate--alanine ligase [Yersinia pestis Angola]
 gi|262360674|gb|ACY57395.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia pestis D106004]
          Length = 507

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 134/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 95  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAVAGT 143

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 144 HGKTTTTAMLSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 200

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 201 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 242

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +    +    +  
Sbjct: 243 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLR-RQDKPLIEVT 301

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 302 LNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGS 361

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 362 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANVLSQ-VDVL 420

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +   A     ++LN +D+++V G
Sbjct: 421 LMLDVYAAGEPPIPGADSRALCRTIRNRGKLDPILVPDSESAPEMLAQILNGEDLILVQG 480

Query: 467 KGH 469
            G+
Sbjct: 481 AGN 483


>gi|148549594|ref|YP_001269696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida F1]
 gi|148513652|gb|ABQ80512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           F1]
          Length = 450

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 122/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 87  ALQQAAARGVKLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNL 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T               + L      L         +E SS  L+    D +     +  
Sbjct: 147 GTP-------------ALDLLADDIEL-------YVLELSSFQLET--TDQLNAEVATVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +       G    + 
Sbjct: 185 NISEDHMDRYSGLPAYHLAKHRIFRGARQ----VVVNRQDALSRPL----PVEGRPCWTF 236

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 237 GLNSPDFKAFGLREVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFE 296

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L  L +   +  R ++V   +         A    +    ++ +     G+  +V   
Sbjct: 297 PMLAALREFGGLAHRCQWVRERNGVNWYDDSKATNVGAALAAIEGLGADIEGK--LVLIA 354

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGD    +   + +         ++        D E++   +   +P  +      +A++
Sbjct: 355 GGDGKGAEFTALREPVKRFCRAVVL-----LGRDAERLAEALGDAVP-LVRVKTLDDAVQ 408

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 409 QCAELAQAGDAVLL 422


>gi|319949906|ref|ZP_08023908.1| UDP-N-acetylmuramate--L-alanine ligase [Dietzia cinnamea P4]
 gi|319436430|gb|EFV91548.1| UDP-N-acetylmuramate--L-alanine ligase [Dietzia cinnamea P4]
          Length = 487

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 91/456 (19%), Positives = 143/456 (31%), Gaps = 62/456 (13%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           G+  D      +A+    + +VVS A    D    + +    + V    + L   A    
Sbjct: 66  GHHAD----ALEALGSPPQIVVVSKAAIPADNPELVAARAAGVPVVTRSQVLGHLARA-- 119

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  + V GT GK+S  S +      +G                  N      P+++
Sbjct: 120 ----GRSIMVCGTHGKTSTTSMLIAGMLSAGSDPSFA--VGGTVLQFGTNARGGADPVFV 173

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
           A+A                         L   +      TN   DH+D+  T +AY+   
Sbjct: 174 AEADESD-------------------GSLVHYEPDVVILTNAEPDHLDHFGTAEAYYEVF 214

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCA 284
                 +    +  +   D+  ++   + A      V      G    L        +  
Sbjct: 215 DTFLARIPDTGALVVCVDDEGAAERARRAAAAGVRVVGYRTADGPTTDLPVAGELAGITV 274

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI-----AIGIDSALVLEHLEKL 339
             +  +  ++++G     L        +    +AA L       A G D+   L  L   
Sbjct: 275 DSDGTRARLTLDGGSHGDLHVGTPGEHMALNALAALLAAREVAGAGGFDADGFLAGLSGF 334

Query: 340 HVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFG-CGG 392
             V  RFE  G    G    R+Y DYAH    +  +L   R I     GR++ VF     
Sbjct: 335 GGVGRRFEPKGEAVVGEGRARVYDDYAHHPTEVAAVLGAAREIVEADGGRLVAVFQPHLY 394

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE------KIRAEIIHGIPGFIEKGNRI 446
            R +      G+ AL LAD  +V D     E PE       I   +           +  
Sbjct: 395 SRTRIFAEEFGR-ALSLADEVVVLDVYGARERPEPGVDGGLIARNVTA---AVHHVPDLD 450

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETV---HIVTNGE 479
            A+ T   +L   DV+   G G  T     IV  GE
Sbjct: 451 SALTTVTGILRPGDVVFTLGAGDITTLGPRIVAGGE 486


>gi|269302690|gb|ACZ32790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae LPCoLN]
          Length = 417

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 115/396 (29%), Gaps = 71/396 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++ S              +  I VV + +  L     +           +TG++GK++ 
Sbjct: 61  LVIRSPGIKPYHPWVEQAVSLKIPVVTDIQVAL-----KTPEFQRYPSFGITGSNGKTTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F+  +    G+ +  +G                                      VE 
Sbjct: 116 TLFLTHLLNTLGIPAIAMGNIGLPI---------------------LDHMGQPGVRVVEI 154

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L         L    F N  R+H+DYH+   AYF+AK+R+ +              
Sbjct: 155 SSFQLATQEEHIPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRIQKC------------- 201

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  +++                 I+ +++             E  D          
Sbjct: 202 -------LRQDKTFWVWEECSLGNSYQIYSEEIE------------EILDKGDALKPIYL 242

Query: 310 FQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               N   A  L   +G       L+ +        R E++G       I    A T  +
Sbjct: 243 HDRDNYCAAYALANEVGWVSPEGFLKAIRTFEKPAHRLEYLGEKDGVHYINDSKATTVTA 302

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E  L  +     G+ ++V   G D+     P +  +        I        E  + I
Sbjct: 303 VEKALMAV-----GKDVIVILGGKDKGGDF-PALASVLSQTTKHVI-----AMGECRQTI 351

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +   IP  +   +  EA+  A  +  + D +++
Sbjct: 352 ADALSEKIPLTLS-KDLQEAVSIAQTIAQEGDTVLL 386


>gi|218234174|ref|YP_002369264.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus B4264]
 gi|218162131|gb|ACK62123.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus B4264]
          Length = 433

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 90/309 (29%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKFNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + +  +P  +           + V K  H     + +          + 
Sbjct: 179 TLEEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHANLYEMDNHFTALHKQSSED 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 239 GERFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   N  EAI T +EM+ 
Sbjct: 354 -MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESKLVFENWKEAIDTKVEMIA 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 ENDVFIITG 417


>gi|313668827|ref|YP_004049111.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria lactamica ST-640]
 gi|313006289|emb|CBN87752.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria lactamica 020-06]
          Length = 424

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/395 (14%), Positives = 115/395 (29%), Gaps = 33/395 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVGEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA------------SSHGLDQHRLDGIKLIA 206
                 P       A           +S+                  +D   L+      
Sbjct: 84  IAVNAEPVSDDTITASFERIEAAHGEISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGR 143

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+         +      A +    E +  E   +  +             +    
Sbjct: 144 LDAVNVFDGDCAVVTSVDLDHQAFLGDTVEQVGFEKAGVFRSGKPAICGQNPAPESLVAH 203

Query: 267 VLSVG------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY------N 314
             ++G       +    H  +    + +     S +        P P     Y       
Sbjct: 204 AEAIGAKLLMVQRDFEFHAMENIQWNYRFHPQHSDDRARNRNALPFPALRGAYQLSNAAC 263

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL                ++    L   PGRF+ +          +D  H  ++   + +
Sbjct: 264 ALTVLECLNGKLPADIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRR 320

Query: 375 NIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI 432
           ++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ ++
Sbjct: 321 SLMNLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQDKL 377

Query: 433 -IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             HGI          EA R A     + D +VV G
Sbjct: 378 HEHGIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|44888240|sp|Q9F1M9|MURC_SHEVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 142/430 (33%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q    G + +VVS+A   ++          I VV    + L+      +G    
Sbjct: 72  GH-HADQV--HGTDVVVVSTAIDAENPELVAAKELRIPVVQRA-EMLAELMRYRHG---- 123

Query: 116 NILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLA 171
             +AV GT GK++  S +  I  Q     +F IG    ++  ++   ++R          
Sbjct: 124 --VAVAGTHGKTTTTSLIASIYAQADRDPTFVIGGLLNSAGTNARLGNSRYLIAEADE-- 179

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                              S     H    ++ +    TN+  DH+D +        +  
Sbjct: 180 -------------------SDASFLH----LQPMVSVVTNIEADHMDTYGGDFEKLKSTF 216

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP    A++  DD   +E++ +                   L  V   ++    
Sbjct: 217 IDFLHNLPFYGVAVMCIDDPVVRELLPKVGR-KIVTYGFSEDADIQALNFVQQGYSSHFT 275

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 +D   +  LPGE  V NAL +  +     I+   ++  L +   +  RF+ +GT
Sbjct: 276 LRRDGVEDIAVMVNLPGEHNVLNALASIAVATEDEIEDEAIVLALAQFEGIGRRFQQLGT 335

Query: 352 NSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
            +       +  DY H  + +   +K  R     + +V+        + +       ++ 
Sbjct: 336 FATSKGEVMLVDDYGHHPSEVAATIKAARLGWPDKRLVMIYQPHRYSRTRDLYDDFVEVL 395

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQ 459
               D  I+ D     E P        +   I   G    I      + +    ++L   
Sbjct: 396 SQ-VDCLILLDVYSAGEAPVPGADSRALCRSIRQRGQLDPIFVAGTEQLLSLLPDVLQDG 454

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 455 DLLLTQGAGN 464


>gi|38234172|ref|NP_939939.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|48428297|sp|P61677|MURC_CORDI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|38200434|emb|CAE50122.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium diphtheriae]
          Length = 477

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 129/423 (30%), Gaps = 58/423 (13%)

Query: 70  AIVVSSAY---SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A       +      +N P++   +    L               + + GT GK
Sbjct: 72  VVVTSFAAIPQDNPELQEARANNIPVIRRSDLLGELME---------DHQQVLIAGTHGK 122

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G           ++    +    T          S  S        
Sbjct: 123 TSTTSMAVVALQAAGKD-PSFAIGGQLNKAGTNAHDGTGKAFVAEADESDASLLRYK--- 178

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+D+ +T +AYF      F E +      ++
Sbjct: 179 -----------------PDIAVVTNIEPDHLDFFKTSEAYFKV-FDDFAERVQPGGTLVV 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-------LKKVCAIHNKQQVTISVEGKD 299
             DD ++  + ++  +               +       ++ +       +  I+V    
Sbjct: 221 CLDDPHAAALGEKFKDRMTVRGYGSPAAAQQYPDVAFTVVEHMEVGPAGTRARITVGDDT 280

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRG 355
            D +  +PG   V NA  A    +  G +   +   +     V  RFEF G         
Sbjct: 281 VDVIMRIPGHHMVLNACAALTAGVTAGAELERLAAGISDFSGVRRRFEFHGRVSGGAFHD 340

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRII--VVFGCGGD---RDQGKRPIMGKIALDLA 410
             +Y DYAH    +  +LK  R     R I  VV         R         + AL LA
Sbjct: 341 AEVYDDYAHHPTEVTAVLKAARQQQEARGIGRVVVAFQPHLYSRTMEFAAEFAE-ALSLA 399

Query: 411 DIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           D A++ D     E P +     I ++ +      + + N         ++    D++V  
Sbjct: 400 DHAVILDIFGAREQPVEGVDSRIISDKMT--IPVVFEPNFSAVAAQVKKIAQPNDIIVTM 457

Query: 466 GKG 468
           G G
Sbjct: 458 GAG 460


>gi|15836434|ref|NP_300958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae J138]
 gi|8979275|dbj|BAA99109.1| muramoylalanine-glutamate ligase [Chlamydophila pneumoniae J138]
          Length = 417

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 115/396 (29%), Gaps = 71/396 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++ S              +  I VV + +  L     +           +TG++GK++ 
Sbjct: 61  LVIRSPGIKPYHPWVEQAVSLKIPVVTDIQVAL-----KTPEFQRYPSFGITGSNGKTTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F+  +    G+ +  +G                                      VE 
Sbjct: 116 TLFLTHLLNTLGIPAIAMGNIGLPI---------------------LDHMGQPGVRVVEI 154

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L         L    F N  R+H+DYH+   AYF+AK+R+ +              
Sbjct: 155 SSFQLATQEEHVPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRIQKC------------- 201

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  +++                 I+ +++             E  D          
Sbjct: 202 -------LRQDKTFWVWEECSLGNSYQIYSEEIE------------EILDKGDALKPIYL 242

Query: 310 FQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               N   A  L   +G       L+ +        R E++G       I    A T  +
Sbjct: 243 HDRDNYCAAYALANEVGWVSPEGFLKAIRTFEKPAHRLEYLGKKDGVHYINDSKATTVTA 302

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E  L  +     G+ ++V   G D+     P +  +        I        E  + I
Sbjct: 303 VEKALMAV-----GKDVIVILGGKDKGGDF-PALASVLSQTTKHVI-----AMGECRQTI 351

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +   IP  +   +  EA+  A  +  + D +++
Sbjct: 352 ADALSEKIPLTLS-KDLQEAVSIAQTIAQEGDTVLL 386


>gi|294142803|ref|YP_003558781.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella violacea DSS12]
 gi|11761336|dbj|BAB19203.1| MurC [Shewanella violacea]
 gi|293329272|dbj|BAJ04003.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella violacea DSS12]
          Length = 494

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 142/430 (33%), Gaps = 53/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q    G + +VVS+A   ++          I VV    + L+      +G    
Sbjct: 83  GH-HADQV--HGTDVVVVSTAIDAENPELVAAKELRIPVVQRA-EMLAELMRYRHG---- 134

Query: 116 NILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLA 171
             +AV GT GK++  S +  I  Q     +F IG    ++  ++   ++R          
Sbjct: 135 --VAVAGTHGKTTTTSLIASIYAQADRDPTFVIGGLLNSAGTNARLGNSRYLIAEADE-- 190

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                              S     H    ++ +    TN+  DH+D +        +  
Sbjct: 191 -------------------SDASFLH----LQPMVSVVTNIEADHMDTYGGDFEKLKSTF 227

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
             F   LP    A++  DD   +E++ +                   L  V   ++    
Sbjct: 228 IDFLHNLPFYGVAVMCIDDPVVRELLPKVGR-KIVTYGFSEDADIQALNFVQQGYSSHFT 286

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 +D   +  LPGE  V NAL +  +     I+   ++  L +   +  RF+ +GT
Sbjct: 287 LRRDGVEDIAVMVNLPGEHNVLNALASIAVATEDEIEDEAIVLALAQFEGIGRRFQQLGT 346

Query: 352 NSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
            +       +  DY H  + +   +K  R     + +V+        + +       ++ 
Sbjct: 347 FATSKGEVMLVDDYGHHPSEVAATIKAARLGWPDKRLVMIYQPHRYSRTRDLYDDFVEVL 406

Query: 407 LDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQ 459
               D  I+ D     E P        +   I   G    I      + +    ++L   
Sbjct: 407 SQ-VDCLILLDVYSAGEAPVPGADSRALCRSIRQRGQLDPIFVAGTEQLLSLLPDVLQDG 465

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 466 DLLLTQGAGN 475


>gi|15618810|ref|NP_225096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae CWL029]
 gi|16752135|ref|NP_445502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae AR39]
 gi|33242264|ref|NP_877205.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae TW-183]
 gi|30316148|sp|Q9Z705|MURD_CHLPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4377221|gb|AAD19039.1| Muramoylalanine-Glutamate Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189877|gb|AAF38745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae AR39]
 gi|33236775|gb|AAP98862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae TW-183]
          Length = 417

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 115/396 (29%), Gaps = 71/396 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++ S              +  I VV + +  L     +           +TG++GK++ 
Sbjct: 61  LVIRSPGIKPYHPWVEQAVSLKIPVVTDIQVAL-----KTPEFQRYPSFGITGSNGKTTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F+  +    G+ +  +G                                      VE 
Sbjct: 116 TLFLTHLLNTLGIPAIAMGNIGLPI---------------------LDHMGQPGVRVVEI 154

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L         L    F N  R+H+DYH+   AYF+AK+R+ +              
Sbjct: 155 SSFQLATQEEHIPALSGSVFLNFSRNHLDYHRNLDAYFDAKLRIQKC------------- 201

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  +++                 I+ +++             E  D          
Sbjct: 202 -------LRQDKTFWVWEECSLGNSYQIYSEEIE------------EILDKGDALKPIYL 242

Query: 310 FQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               N   A  L   +G       L+ +        R E++G       I    A T  +
Sbjct: 243 HDRDNYCAAYALANEVGWVSPEGFLKAIRTFEKPAHRLEYLGKKDGVHYINDSKATTVTA 302

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E  L  +     G+ ++V   G D+     P +  +        I        E  + I
Sbjct: 303 VEKALMAV-----GKDVIVILGGKDKGGDF-PALASVLSQTTKHVI-----AMGECRQTI 351

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +   IP  +   +  EA+  A  +  + D +++
Sbjct: 352 ADALSEKIPLTLS-KDLQEAVSIAQTIAQEGDTVLL 386


>gi|261377899|ref|ZP_05982472.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria cinerea
           ATCC 14685]
 gi|269145752|gb|EEZ72170.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria cinerea
           ATCC 14685]
          Length = 424

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 124/393 (31%), Gaps = 37/393 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    R+  +    ++ V GT+GK SV +++ QI +++G     +     +    +    
Sbjct: 28  SEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNERIAVN 87

Query: 163 TTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
             P                   I L        +     +  +     L+     RLD +
Sbjct: 88  AEPVSDDTITASFERIETARGKISLTYFEFNALAAVDIFMREQVDVMILEVGLGGRLDAV 147

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +       +    +D+          ++   +  + +     I   +   + ++  A  
Sbjct: 148 NVFDCDCAVVTSVDLDHQA-FLGNTVEQVGFEKAGVFRSGKPAICGQNPAPESLVAHAEA 206

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G ++L V     F  L+ +   + +     S +        P P     Y    AA   
Sbjct: 207 IGTKLLMVQRDFDFSSLENIQ-WNYRFHPQHSDDPARNRNSLPFPALRGAYQLSNAACAL 265

Query: 323 IAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +   +  +   +        L   PGRF+ +          +D  H  ++   + +++
Sbjct: 266 TVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRRSL 322

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
             +    +   VF    D+D      + +I  D  D   +   D PR    E ++ ++  
Sbjct: 323 INLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHK 379

Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I          EA R A     + D +VV G
Sbjct: 380 HSIENIQTFATVREAYRAAASKAGENDRIVVFG 412


>gi|167624560|ref|YP_001674854.1| FolC bifunctional protein [Shewanella halifaxensis HAW-EB4]
 gi|167354582|gb|ABZ77195.1| FolC bifunctional protein [Shewanella halifaxensis HAW-EB4]
          Length = 421

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 111/368 (30%), Gaps = 30/368 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----------TP 165
            ++ V GT+GK +  + ++   Q SG +         +    +                 
Sbjct: 49  KVVTVAGTNGKGTTCAMIEAALQLSGQTVGVYSSPHLLKYNERVRINGLDATDAALVNAF 108

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             I  A+A   L+      ++         LD   L+         TN+    I    + 
Sbjct: 109 ESIETARAEISLTFFEYATLAGLYLFKAAKLDVILLEVGLGGRLDATNIIDTDIAVVTSI 168

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                  +    E +  E   I  A+      ++         +      G  ++     
Sbjct: 169 DLDHQEYLGDTREHVAAEKAGIFRANRPA---IVGEPDCPSSLLDVANRVGASLYRVNSE 225

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVV 342
             +         +G+ FD            NA     +        S  ++        +
Sbjct: 226 FSYRCSDKDWHYQGQHFDLDNLPFPYLPQPNAATVIAVLEHLCPTISEDIIAKAVGETQL 285

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E     +   R+ VD AH  ++   +   +  +   R+I + G   D+D   R ++
Sbjct: 286 AGRLE---CLNDSPRVIVDVAHNPHAARYLKSRLAAMPKRRLIALCGMLKDKDV--RSVL 340

Query: 403 GKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNK 458
            +++ D  D   + D + PR        A++   +P         +   A       L  
Sbjct: 341 QELSAD-VDQWYLCDLSVPRG----ATAADLKAFMPAQTQASTYTDMSAAWHALRAQLQP 395

Query: 459 QDVLVVAG 466
            DV++V G
Sbjct: 396 DDVVIVFG 403


>gi|220905003|ref|YP_002480315.1| FolC bifunctional protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869302|gb|ACL49637.1| FolC bifunctional protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 444

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 102/338 (30%), Gaps = 15/338 (4%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+ LS+       + P   + V GT+GK S A+F+  +CQ  GL +        +S   +
Sbjct: 31  RRALSILG---LARPPFVTVQVLGTNGKGSTAAFLSSLCQSHGLRTGLYTSPHFVSPTER 87

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                 P P  L    +      V  ++        +   +  +        ++      
Sbjct: 88  IRIDGHPWPPDLWPPQADSIMNAVPELTYF------EFLTVLALLAFREEQVDVAVLEAG 141

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
              +  A       L            +   D  +    K         +    Q     
Sbjct: 142 LGGSHDATTAVSADLTCFTPIAMDHKDVLGADLAAIARDKAGAIRPNVPVCAARQFPQAT 201

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA------GLCIAIGIDSALV 332
                A    +   +  +  +  F+  L G  Q  NA +A          +      A +
Sbjct: 202 RVLENAAAACKAPLVWADTLEAPFVPGLAGPHQRDNAALALTAWRRLAPMLGKNPADAAL 261

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            +       VPGR + +        + +D AH  + +  ++  +          VF C G
Sbjct: 262 QQQGLARAFVPGRLQAIPAADGLPPLLLDGAHNPHGMAALVNALNQTGVRPAAAVFSCLG 321

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           D+D      M K  L    + I    NPR+ D   + A
Sbjct: 322 DKDWHSVAGMLKKILGHTPVFIPALHNPRAADVHDVAA 359


>gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
 gi|30316069|sp|Q8R9G4|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
          Length = 450

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 101/300 (33%), Gaps = 24/300 (8%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + L +    H+  E SS  L+   +   +       N+  DH+D H+T + Y 
Sbjct: 143 IGYPLIYAALEAGPNDHIVAEISSFQLET--VKEFRPKISCIINITPDHLDRHKTFENYA 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           N K R+FE    +E   + Y DD  +  + +RA                 ++K+      
Sbjct: 201 NIKGRIFENQREEEYVVLNY-DDPVTWGLKERAKAKVFPFSRKKVLENGAYVKEGFLY-- 257

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                +  +         +PGE  + NAL A+ +    GI+   +   L     V  R E
Sbjct: 258 -----LQNKKVIKVEDIYIPGEHNLENALAASSVAYLSGIEVDAIETTLRTFKGVEHRIE 312

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV                 ++    ++ +      +  +V   GG     +     K   
Sbjct: 313 FVAEIEGIKFYNDSKGTNPDASIKAIQAL------KTPIVLIAGGYDKGSEFDEFVKTFD 366

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       +  +KI+   +             +  EA+R A E+  K D +++
Sbjct: 367 KKVRKLILI-----GQTAQKIKKTALKYSYPEEDIFLVDSLEEAVRKAYEVAEKGDSVLL 421


>gi|121603914|ref|YP_981243.1| cyanophycin synthetase [Polaromonas naphthalenivorans CJ2]
 gi|120592883|gb|ABM36322.1| cyanophycin synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 862

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 9/136 (6%)

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
              H  PGRF     +  G  +  DY H  +++  ++  +  + + R  VV    GDR  
Sbjct: 704 CDTHNAPGRFNV--MDYGGATVIADYGHNPDAMLALVAAVNAMPAQRRSVVISGAGDRRD 761

Query: 397 GKRPIMGKIALDLADIAIVTDDNP-RSE---DPEKIRAEIIHGIPGFIEKGN-RIE--AI 449
                   I     D  I+  D   R     +   +  E + G          R E  AI
Sbjct: 762 SDITNQTVILGAAFDDVILYQDAAQRGRADGEVMALLREGLKGASRTQRIDEIRGEFVAI 821

Query: 450 RTAIEMLNKQDVLVVA 465
            TA+  L   D+ +V 
Sbjct: 822 DTALARLQPGDLCLVL 837


>gi|328955358|ref|YP_004372691.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
 gi|328455682|gb|AEB06876.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
          Length = 473

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 127/457 (27%), Gaps = 66/457 (14%)

Query: 58  LFIPQAIAQGAEA----------------IVVSSAYSLQDFSA--TIRSNTPILVVDNTR 99
            +I Q +  G                   +VVS+A    +           P+       
Sbjct: 49  RYIRQLLRAGVSVHVGHDASLIDEAEPDVVVVSTAIPETNPELVRARELGIPVWPRAKML 108

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQ 158
             L          H    +AV GT GK++ AS    +  R G   SF IG          
Sbjct: 109 AALG---------HGCTTIAVAGTHGKTTTASMCATMLDRMGLDPSFLIGGIVEGYKTNG 159

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
            N   T       ++ S                          ++      TN+  DH+D
Sbjct: 160 RNGSGTYFVAEADESDSSFLY----------------------LEPRVVVVTNVEADHLD 197

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           ++ +     N   +    +  +        D    +     +                  
Sbjct: 198 HYGSLAEIENTFAQFMSLVGEQGVIVACGDDKQLYELARSTSKRIVTYGFDARNDIVCEV 257

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
               CA  +  ++           +   PG   + NA  A G+  A+G+D+A     L  
Sbjct: 258 CDDRCAQASGCRIRFPDGRLHEVDIAHNPGRHNMLNASAAMGVAFALGLDTAAAARALST 317

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  RF  VG +  G  +  DY H    ++  L   R +    I VVF          
Sbjct: 318 FEGVRRRFTRVG-DVCGVTVVDDYGHHPTEIKATLAAARGLDYRHIDVVFQPHRYSRLKA 376

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG--FIEKGNRIEAIR 450
                  A   AD  ++ D     E P      + +   +    P        +R+  + 
Sbjct: 377 FLDDFADAFADADKVVLIDVFSAGEMPIPGVTSKALADTVRARHPDKQVSYVSDRMALME 436

Query: 451 TAIEMLNKQDVLVVAGKGH------ETVHIVTNGEKK 481
               +    D+L+  G G       E      + +K 
Sbjct: 437 RLETITEPGDLLITMGAGDISAVAPE-YIEYLDKKKV 472


>gi|317968396|ref|ZP_07969786.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0205]
          Length = 460

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 77/432 (17%), Positives = 139/432 (32%), Gaps = 65/432 (15%)

Query: 62  QAIAQGAE---AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            AI  G     A+VVSSA    +       R+   +    +    L   A+       + 
Sbjct: 46  DAIRSGTSCPPAVVVSSAVPANNPELLEAERAGLKVWHRSDVLAAL--IAA-------QP 96

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            ++V G+ GK++ ++ V  +   +                        P+ +      ++
Sbjct: 97  SISVAGSHGKTTTSTLVASLLHATNHD---------------------PTAVIGGVVPAF 135

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S+       +  +        L   +   G  TNL  DH D++    +           
Sbjct: 136 ASNGRNGDGPLLVAEADESDGSLVKFQSWLGVITNLELDHTDHYSDLASLITT------- 188

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L + +             V++    A         +G            ++   T   +
Sbjct: 189 -LQRFAKGSEQLLANRDCPVLREHFQAHHWWSIQSSEGVDFAAIADELDGDRTLATFYEQ 247

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  PLPG   + NA  A   C   G+  A +   +E L     RF++ G N  G
Sbjct: 248 GEALGQFRLPLPGLHNLSNAAAAMAACRLHGVSFAELQRAVEGLQAPGRRFDYRG-NWCG 306

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT----------SGRIIVVFGCGG-DRDQGKRPIMGK 404
            ++  DYAH  + ++  L   R +             R++VVF      R         +
Sbjct: 307 RQVVDDYAHHPSEVQATLAMARLMVSSGRSPLPEAPQRLLVVFQPHRYSRTAEFLSDFAQ 366

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF-IEKGNRIEAIRTAI-EML 456
                AD  ++       E P        + AEI    PG  +   + +E +  AI +  
Sbjct: 367 ALSQ-ADAVLIAPLYTAGEAPIPGISSAALAAEIQRIAPGLPVSAFDDLETLADAIGQTS 425

Query: 457 NKQDVLVVAGKG 468
              D+++  G G
Sbjct: 426 QAGDLVLAMGAG 437


>gi|291566624|dbj|BAI88896.1| UDP-N-acetylmuramate--alanine ligase [Arthrospira platensis
           NIES-39]
          Length = 529

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 132/431 (30%), Gaps = 71/431 (16%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A      ++   +    PI    +    L   A           +AV GT GK++
Sbjct: 112 VICSTAIHPENAEYKVALELGCPIFHRSDLLAAL--MAEY-------QSIAVAGTHGKTT 162

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL                      P+ +   +  ++  +  V H    
Sbjct: 163 TSSLIAFLLLKAGLD---------------------PTILVGGEVSAWEGNARVGHGPYL 201

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D+++      +       +            
Sbjct: 202 VAEADESDGSLVKLGAYIGIVTNIELDHPDHYKNLDQLISTFKIFANQCETIVGCV---- 257

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  V           ++      +                             L G
Sbjct: 258 ---DCPIVRDYLKPTISYSINPELDADYTVDAVQYLADGVIAQVYERGEAIGLLKLQLLG 314

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A  +   +  + +++ + + +      RFE+ G N  G +   DYAH  + 
Sbjct: 315 SHNLSNALAAVAVGRLLNWEFSVIAQAIAEFPGTKRRFEYRG-NYGGIQFVDDYAHHPSE 373

Query: 369 LEMILKNIR-------------------TITSGRII--VVFGCGGDRDQGKRPIMGKIAL 407
           + + L   R                    I  G  I  VV      R      ++   A 
Sbjct: 374 IRVTLAAARGRLQNSSGLSSTFSETAITPIHPGSEIKRVVAIFQPHRYSRTETLLEDFAQ 433

Query: 408 DL--ADIAIVTDD------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNK 458
               AD+ ++T+       NP   + +++ A I    P    + +  +A++    ++L  
Sbjct: 434 CFGDADLVMLTEIYSAGEANPGRINGQQLAARIAENHPHVDYQPSL-DAVKTRLFQLLKP 492

Query: 459 QDVLVVAGKGH 469
            D+++  G G+
Sbjct: 493 GDLVLFLGAGN 503


>gi|254525136|ref|ZP_05137191.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
 gi|219722727|gb|EED41252.1| UDP-N-acetylmuramate--alanine ligase [Stenotrophomonas sp. SKA14]
          Length = 478

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 143/420 (34%), Gaps = 53/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLTAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---SIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++  DD     +  +                    + V    ++ + T+ +      + +
Sbjct: 224 VLCIDDPEVAALAAKTPRHVMSYGMSPQADV--RAENVVQEGSRMRFTLRLPQGTSQEVV 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG+  V NAL AA +   +G+    +   LE    V  RF    E    +    RI 
Sbjct: 282 LALPGKHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRII 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H  + LE +    R   + + +VV      R    R    K A  L+  D  ++++
Sbjct: 342 DDYGHHPSELEAVFAAARGGWADKRLVV-AFQPHRYSRTRDQFDKFAAVLSSVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKG 468
             P  E+P  I     H +   I    R E   +  A E+           D+L++ G G
Sbjct: 401 VYPAGEEP--IAGADSHALARAIRARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAG 458


>gi|194364381|ref|YP_002026991.1| UDP-N-acetylmuramate--L-alanine ligase [Stenotrophomonas
           maltophilia R551-3]
 gi|229620423|sp|B4SJX6|MURC_STRM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194347185|gb|ACF50308.1| UDP-N-acetylmuramate/alanine ligase [Stenotrophomonas maltophilia
           R551-3]
          Length = 478

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 143/420 (34%), Gaps = 53/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLTAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---SIITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++  DD     +  +                    + V    ++ + T+ +      + +
Sbjct: 224 VLCIDDPEVAALAAKTPRHVMSYGMSPQADV--RAENVVQEGSRMRFTLRLPQGTSQEVV 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG+  V NAL AA +   +G+    +   LE    V  RF    E    +    RI 
Sbjct: 282 LALPGKHNVLNALAAAAVGWQLGVAPDAIARALEGFAGVGRRFNDLGEVTTASGAKVRII 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H  + LE +    R   + + +VV      R    R    K A  L+  D  ++++
Sbjct: 342 DDYGHHPSELEAVFAAARGGWADKRLVV-AFQPHRYSRTRDQFDKFAAVLSSVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE--AIRTAIEML-------NKQDVLVVAGKG 468
             P  E+P  I     H +   I    R E   +  A E+           D+L++ G G
Sbjct: 401 VYPAGEEP--IAGADSHALARAIRARGRSEPVVVGKAAELASVLPDVLQDGDLLLMMGAG 458


>gi|60390567|sp|Q899G5|MURD_CLOTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 458

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 110/356 (30%), Gaps = 39/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + +  I +  G + +  G          +   T    I
Sbjct: 111 FIKYCPAKLFCITGSDGKTTTTTLIYNILKTEGYTVWVGGNIG-------NPLFTKIEEI 163

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L         +     TN+  +H+D H+  + Y  
Sbjct: 164 -----------KKDDKVVLELSSFQL---MSIKEPIEVALVTNVSPNHLDIHKDMEEYIK 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+     +   I   D+  +K + +       +        +             
Sbjct: 210 AKKNIFKYQRENDLLVI-NEDNKITKSMEEECRGRLLKFSMKEKLKEGSFYYN------- 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +     E K  +              L+AA  C++       + E  +  + V  R EF
Sbjct: 262 -EDLYINEKKVCNVSEVKLKGMHNVENLLAAFSCVSEDSSIDSMREVAKNFNGVEHRLEF 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +       L++       R +++   G D+      ++ K  + 
Sbjct: 321 VKEIQEVKYFNDSIASSPTRTLAALQSFD-----RPVILIAGGYDKKISF-EVLAKEGIS 374

Query: 409 LADIAIVTDDNPRS--EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                I+  D      E  +K+  +    +P      +  EAI  A E     DV+
Sbjct: 375 HIKHLILLGDTKYKIEEAFKKVMRDSSEDLP-ISICNSIEEAINIAKENGESGDVV 429


>gi|294508378|ref|YP_003572436.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
 gi|294344706|emb|CBH25484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
          Length = 543

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 119/356 (33%), Gaps = 30/356 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG+ GK+S    V ++ ++              + +A  +   TP  + LA      
Sbjct: 197 VGITGSYGKTSTKFIVAELLRQ------------KYNVYATPSSYNTPMGLCLAVNEHLK 244

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V  +       G D   L  I     S               Q +  A+  +  E 
Sbjct: 245 PEHQVLVLEYGIRYPG-DMDELCDIAEPDASVVTTIGVAHLETMGSQDHIAAEKGVLVER 303

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVE 296
              + PA++  DD     + +RA     R+ + G+    I    +               
Sbjct: 304 TAPDGPAVLNVDDERVAAMAERAAGPVWRISTEGHPDADITASDIRYDTGGTAFNVTDDT 363

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G    F   L G   V N L+A  +  ++G+    +   + ++  +  R +     SRG 
Sbjct: 364 GTTVTFETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIEHRLQL---RSRGD 420

Query: 357 RIYVDYAHTSNSL--EMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDL-A 410
              +D A  SN +     ++ +  +  G+ ++V       GDR   +    G +      
Sbjct: 421 VTIIDDAFNSNPVGARNAVEILSEMDGGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDL 480

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           D+ ++  +    E    I+A +  G       +   +  EA       L   DV++
Sbjct: 481 DLVVLVGE----EQTAPIQAGLSEGGAPAERIMVVDSLAEAQEILERRLGPGDVVL 532


>gi|46204165|ref|ZP_00209293.1| hypothetical protein Magn03004223 [Magnetospirillum
          magnetotacticum MS-1]
          Length = 75

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 22 PMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
               +R +  +++DSR +  G +FVA+ G   DG LF
Sbjct: 14 EAGLADRAVAGLTADSRKVVPGGVFVAVPGTAADGRLF 51


>gi|313500439|gb|ADR61805.1| MurD [Pseudomonas putida BIRD-1]
          Length = 446

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 123/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 83  ALQQAAARGVKLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNL 142

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T               + L      L         +E SS  L+    D +     +  
Sbjct: 143 GTP-------------ALDLLADDIEL-------YVLELSSFQLET--TDQLNAEVATVL 180

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +       G    + 
Sbjct: 181 NISEDHMDRYSGLPAYHLAKHRIFRGARQ----VVVNRQDALSRPL----PVEGRPCWTF 232

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 233 GLNPPDFKAFGLREVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V   +         A    +    ++ +     G+  +V   
Sbjct: 293 PMLEALREFGGLAHRCQWVRERNGVNWYDDSKATNVGAALAAIEGLGADIEGK--LVLIA 350

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGD    +   + +         ++        D E++   +   +P  +      +A++
Sbjct: 351 GGDGKGAEFTALREPVKRFCRAVVL-----LGRDAERLAEALGDAVP-LVRVKTLDDAVQ 404

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 405 QCAELAQAGDAVLL 418


>gi|251780203|ref|ZP_04823123.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084518|gb|EES50408.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 460

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 87/284 (30%), Gaps = 20/284 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+DY++          +  + +           D      V +  + 
Sbjct: 178 FPYVGVILNIDADHLDYYKDIDEITETFGQFADLIPNDGYLIGYIGD----SRVKEILYK 233

Query: 263 AGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
           A C  LS G++   +  + +                 K FD     PGE  + NAL +  
Sbjct: 234 AKCNTLSYGFENADVTARNITFNEKGCASFDVYKHNNKLFDLTLSNPGEHNILNALSSIC 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           + +   ++   ++  L +      RFE+ G    G  +  DYAH    ++  L   + I 
Sbjct: 294 VSLIFDVNYDDIICGLSECKGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIP 352

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
             +   VF      R +           D AD  ++ D     E          +   + 
Sbjct: 353 HNKTFCVFQPHTYTRTKTLFDEFTDAFFD-ADEVVLMDIYAAREKDTGLVSSNDLGVALR 411

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-----ETV 472
                     +  EA+          D+L+  G G      E  
Sbjct: 412 AKGVKCTNVHSHDEALEYLKNSAKPNDLLLTVGAGDVVIVGEKY 455


>gi|163856171|ref|YP_001630469.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259899|emb|CAP42200.1| cyanophycin synthetase [Bordetella petrii]
          Length = 946

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 10/161 (6%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEM 371
           N L A G   A+GI  A++   +E   +      ++F      G  + VD  H +++L+ 
Sbjct: 766 NVLAAVGTAWALGIPDAIIRAGIEAFDIDQADAPWQFTLFERGGATVVVDDVHNASALQA 825

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI------VTDDNPRSEDP 425
           ++       + R   V+  G DR        G++     D  +      VT   P  +  
Sbjct: 826 LIDAAARFPASRRCAVYAAGADRRDADLIEQGRLLAGAFDRVVLYDDATVTSRRPAGQAR 885

Query: 426 EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +R  +  G       ++ +   AI  A++ +   D +++
Sbjct: 886 ALLRQGLAQGTRPIDVQDEPDHALAIGLALDHIQAGDFVLL 926


>gi|222099426|ref|YP_002533994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
 gi|254766063|sp|B9K6P5|MURD_THENN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221571816|gb|ACM22628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
          Length = 432

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 117/362 (32%), Gaps = 57/362 (15%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
                L     E ++ +TGT+GKS+ A+ +       GL  F  G   T +         
Sbjct: 91  ELQFFLDRADKEKVIGITGTNGKSTSAALMHHALSHRGLKVFLGGNFGTPAV-------- 142

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                           +   +  +E SS  L        ++      N+  DH+D+H + 
Sbjct: 143 ------------EALREDYDYYVLEVSSFQLFWCERP--RVSRFVLLNISEDHLDWHSSF 188

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y N+K++       K++       +   + +   +     ++                
Sbjct: 189 KEYLNSKLKPAFFQEEKDTFVY----NKNIETLEDLSRVKPKKIPFWTEDTFVE------ 238

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 +  + ++GK F      P + +  N L  + L   +  D    L+ L     +P
Sbjct: 239 ------ENRLVLQGKSFPLPGSYPLQMKE-NILAVSVLYNELFGDVEGFLDSLRSFKPLP 291

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R EF+G            A +++++   L N          V+    G        +  
Sbjct: 292 HRMEFLGKIKGRSFYNDSKATSTHAVLGALSNFDR-------VILIMCGIGKNENYSVFI 344

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDV 461
           + A       IV           +I  ++   +    +    +  EA R A+E+  + DV
Sbjct: 345 ERARPRIKHLIV---------FGEIYRDLRPFLSNVPYSIVSDLEEAFRKALEVSEEGDV 395

Query: 462 LV 463
           ++
Sbjct: 396 IL 397


>gi|86134329|ref|ZP_01052911.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
 gi|85821192|gb|EAQ42339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
          Length = 461

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 116/389 (29%), Gaps = 45/389 (11%)

Query: 82  FSATIRSNTPILV--VDNTRKFLSLF--ASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            S  I  + P++   VDN    +S    A+         I+ +TG++GK++       I 
Sbjct: 85  KSPGIPDSVPLVKKLVDNNIPVISEIEFAANFTK---ATIVGITGSNGKTTTTLLTHHIL 141

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
           + + L     G                     L       + +   +  +E SS  LD  
Sbjct: 142 KNANLDVGAAGNIG--------------DSFALQV-----AEKNYNNYVLEISSFQLD-- 180

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
            +   +      TN+  DH+D +      +        +   +    I  ADD      +
Sbjct: 181 GITNFRPHIAILTNITPDHLDRYDYDFQNYINSKFRITKNQEETDFLIYDADDDVITGWL 240

Query: 258 KRAHNAGC--RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           K            +         +K      N Q+    +                  NA
Sbjct: 241 KENKTKAKLLPFSNEKELKYGAFIKDNNITINIQKDKFYMPISSLSIKGKH----NTKNA 296

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A      + +    + E L        R E V        I    A     +      
Sbjct: 297 MAATMAAQLLKVRKDAIKESLSNFEGAEHRLENVAKIKDVHYINDSKATN---VNATFYA 353

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +  +    I +V G   D+      ++  +   +  I  +  DN      EKI+    + 
Sbjct: 354 LECMDQQTIWIVGGV--DKGNDYTDLLPLVREKVKAIVCLGVDN------EKIKNTFGNV 405

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   +E     EA++ + ++  + D +++
Sbjct: 406 IETIVETAGAEEAVKVSHKLAERGDAVLL 434


>gi|291535568|emb|CBL08680.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           M50/1]
          Length = 459

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 85/275 (30%), Gaps = 10/275 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  +H+D+ +  Q   N+  R F     K+   II  +     E+    
Sbjct: 176 HFYPRYSVILNVEAEHLDFFKDIQDIRNS-FRKFAGNTKKDGAIIINGEIENYTELTSGL 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                          +                +       D    +PG   V NAL A  
Sbjct: 235 DPQVITFGLNDSCDYYPSDITFDKTACASFTAMHHGTPVMDVKLHVPGMHNVSNALAAIA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L + +GI +  +L  L        RF++ G    G  I  DYAH    +   L   +   
Sbjct: 295 LSLDLGISTDAILAGLSAFGGADRRFQYKGC-VDGVTIIDDYAHHPTEIRATLTAAKNYP 353

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
             R+++ F      R +        +   +AD+ ++ D     E          I A++ 
Sbjct: 354 HKRLVLAFQPHTYSRTKAFLDDFADVLS-MADVVVLADIYAAREKNTYGISSRDILAKLK 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +  E  +  ++     D+L+  G G
Sbjct: 413 EKGTECYYFPSFEEIEKFLLKNCINGDLLITMGAG 447


>gi|262273812|ref|ZP_06051625.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
 gi|262222227|gb|EEY73539.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
          Length = 487

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 139/436 (31%), Gaps = 54/436 (12%)

Query: 50  VGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLF 105
            G K     F+  A +   GA  +VVS+A    +          I VV   R+   L+  
Sbjct: 66  KGAKV----FLGHAESNVDGASVVVVSTAIRQDNPELVAAKTARIPVV---RRAEMLAEL 118

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
               +G      +AV GT GK++  +    I Q +GL    +     + S   + RL   
Sbjct: 119 MRYRHG------IAVAGTHGKTTTTALTTLIYQEAGLDPTFV-NGGLVKSAGTNARLG-- 169

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                              ++    S     H    ++ +    TN+  DH+D +     
Sbjct: 170 --------------CSRYLIAEADESDASFLH----LQPMVAIVTNIEADHMDTYGGNFD 211

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
                   F   LP    A++  DD   +E++ R                 +   +    
Sbjct: 212 NLKQTFIDFLHNLPFYGLAVMCVDDPVVRELIPRIGRQVITYGFSEDADVRLKDYRQEGQ 271

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                  +     D      +PG     NA  A  +    G++   +L  L        R
Sbjct: 272 KGIFT-VLRAGKPDIHVELNIPGRHNALNAAAAVAVATEDGVEDDAILRALASFEGTGRR 330

Query: 346 FEFVGTNSRGGRI---YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRP 400
           F+ +G             DY H  + +++ ++  R      R+++VF      R +    
Sbjct: 331 FDQLGLFPVDDGYALLVDDYGHHPSEVDVTIQAARAGWADNRLVMVFQPHRYSRTRDLYD 390

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAI 453
               +     D+ ++ D  P  E P        +   I   G    I   +  +A+  A+
Sbjct: 391 DFANVLEQ-VDVLLMLDVYPAGEAPIAGADGRSLCRTIRGRGKIDPIFVPDV-DALPAAL 448

Query: 454 EM-LNKQDVLVVAGKG 468
              +   D+++  G G
Sbjct: 449 AAVIQPGDLVLTQGAG 464


>gi|237785344|ref|YP_002906049.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758256|gb|ACR17506.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 537

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/208 (23%), Positives = 68/208 (32%), Gaps = 37/208 (17%)

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---- 354
                  +PG+  V NA+ A    + +G D    +  +     V  RFE  GT S     
Sbjct: 334 THRVEMHIPGKHMVLNAVAAIVSSVLVGADRERAVSGVNGFQGVRRRFESHGTISHVYYE 393

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI---------TSGRIIVVFGCGG-DRDQGKRPIMGK 404
           G  +Y DYAH    +  +L   R              R+IVVF      R +       +
Sbjct: 394 GASVYDDYAHHPTEVRAVLTAAREKIQAMDPVEGHQRRVIVVFQPHMYSRTEEFASEFAE 453

Query: 405 IALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            AL LAD AIV D     E P      + I  ++                 R    +   
Sbjct: 454 -ALSLADEAIVMDIYGAREKPIPGVTSDLIIDQMTISAHAAHRVDEVP---RMVSSIAGP 509

Query: 459 QDVLVVAGKG-------------HETVH 473
            D+++  G G             HE V 
Sbjct: 510 GDIILTMGAGTVTMLADPIVAALHEPVQ 537


>gi|320155722|ref|YP_004188101.1| dihydrofolate synthase/Folylpolyglutamate synthase [Vibrio
           vulnificus MO6-24/O]
 gi|319931034|gb|ADV85898.1| dihydrofolate synthase / Folylpolyglutamate synthase [Vibrio
           vulnificus MO6-24/O]
          Length = 421

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 99/367 (26%), Gaps = 21/367 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +             
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRINGQDLADEKH 105

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    +S+       +   L  ++L      ++    +       A      
Sbjct: 106 CEAFDFIEQQRGDISLSL----FEYGTLAALRLFQTEKVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 162 DVSVITSLALDHVDWLGDDINVIGFEKAGIYRSGKPAICGQPTPPSTVAAHADDIGAEFY 221

Query: 288 KQQVTISVEGKDFDFLFPL-------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +  +    +  D  + +              +     A  L      +  L   ++    
Sbjct: 222 QVGIQFDYQLSDEGWRWQHGAFALEDLPLPGLPLPNAATALMALGASNLELSDINIVNGL 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
                   +        I +D AH  +S E ++  +++   G+ I  V G   D+D    
Sbjct: 282 KNAKLAGRMQVLQTAPLILLDVAHNPHSAEYLVAQLQSRYQGKTIHAVIGMLKDKDIKST 341

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             +          A +T   PR+   E++   +  G   +    +   A   A+      
Sbjct: 342 LEVLVPVTRHWYPASLT--GPRAATAEELIQYLPQGTQSYT---DPAHAFDQALSQAQSD 396

Query: 460 DVLVVAG 466
           ++++V G
Sbjct: 397 EIVLVVG 403


>gi|114777351|ref|ZP_01452348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552133|gb|EAU54635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 462

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 88/274 (32%), Gaps = 14/274 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     NL  DH D     +A   A+       +P     ++  DD     V+ R 
Sbjct: 176 HYHARTLILNNLEYDHADIFPDLEAIQ-AQFHHLIRTVPAAGSIVVNGDDDNLDYVLARG 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +           +  +    +        +  +  + + G  QV NA   A 
Sbjct: 235 CWTPLVRFARYGGRDAEWHWQPLSDDGSRFRLYQHGDEVMEVSWGMIGLHQVANACAVAA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G+ SA +         +  R   VG    G RI+ D+AH   ++  ++   R   
Sbjct: 295 TASRLGVSSADIAAAFASFGGIRRRMTLVG-EVGGIRIFDDFAHHPTAISGVVAAARAAM 353

Query: 381 --SGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADIAIVTDDNPRSEDPEKIR--AEI 432
              GR+ VV      R    R  + + AL      AD  +    + R+ +   +   AE+
Sbjct: 354 KGRGRLWVVVEP---RSNTMRSRIHQQALPACFAAADQVVFVPASDRNLNASDVLDVAEV 410

Query: 433 IHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              I P  +   +    I       ++ D +++ 
Sbjct: 411 CRAIGPHAVVLADAEAIIAHIRSHASEGDDVLIL 444


>gi|257791840|ref|YP_003182446.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|317489841|ref|ZP_07948337.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|257475737|gb|ACV56057.1| UDP-N-acetylmuramate/alanine ligase [Eggerthella lenta DSM 2243]
 gi|316911055|gb|EFV32668.1| UDP-N-acetylmuramate-alanine ligase [Eggerthella sp. 1_3_56FAA]
          Length = 475

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 126/414 (30%), Gaps = 37/414 (8%)

Query: 76  AYSLQDFSATIRSNTPILVV------DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              +    A I    P++VV      +N     +  A  L   H   +LA  G       
Sbjct: 53  EVHIGHDPANIPEGNPVIVVSTAILDNNPELAAAK-ARGLTIWHRAQMLAYLG------R 105

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           A     +    G ++      S +    +D        +      ++  +     V  + 
Sbjct: 106 ALQTLAVAGTHGKTTTSSMLASVLDGMGEDPTFLIGGIVRAYGTNAHSGTGAHYVVEADE 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S           +   A   TN+  DH+D+++     +         +       +   +
Sbjct: 166 SDKSF-----MHLSPRAVLVTNIEADHLDHYRDLDEIYEKFASFIGSVPDDGGVVVACGE 220

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     V + +                I   +   + +   + +         +   PG 
Sbjct: 221 DEALVRVARASGKRLFTYGFSDACDVRIASYEPNGVGSDFTLELPDGSVVSAHVKQNPGR 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA    GL  A+G D A   E L     V  RF+ VG  + G  +  DYAH    +
Sbjct: 281 HNVLNAAGVVGLLWALGYDPAQAAEALADFAGVKRRFDLVG-EAGGVTVVDDYAHHPTEI 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-------ALDLADIAIVTDDNPRS 422
              ++    +    + V+F         + P+  ++       A D AD     D  P  
Sbjct: 340 AATIEAASHLGFAHVHVLFQPHR---YSRAPLFTEVLKDDFGRAFDAADAVTFMDVYPAG 396

Query: 423 EDP------EKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E P      +     ++   G P       RIE +      L + D+L+  G G
Sbjct: 397 EAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEVVPYLAGKLGEGDLLITMGAG 450


>gi|28209980|ref|NP_780924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           tetani E88]
 gi|28202415|gb|AAO34861.1| UDP-N-acetylmuramoylalanine-d-glutamate ligase [Clostridium tetani
           E88]
          Length = 464

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 110/356 (30%), Gaps = 39/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + +  I +  G + +  G          +   T    I
Sbjct: 117 FIKYCPAKLFCITGSDGKTTTTTLIYNILKTEGYTVWVGGNIG-------NPLFTKIEEI 169

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                      +    V +E SS  L         +     TN+  +H+D H+  + Y  
Sbjct: 170 -----------KKDDKVVLELSSFQL---MSIKEPIEVALVTNVSPNHLDIHKDMEEYIK 215

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+     +   I   D+  +K + +       +        +             
Sbjct: 216 AKKNIFKYQRENDLLVI-NEDNKITKSMEEECRGRLLKFSMKEKLKEGSFYYN------- 267

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +     E K  +              L+AA  C++       + E  +  + V  R EF
Sbjct: 268 -EDLYINEKKVCNVSEVKLKGMHNVENLLAAFSCVSEDSSIDSMREVAKNFNGVEHRLEF 326

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +       L++       R +++   G D+      ++ K  + 
Sbjct: 327 VKEIQEVKYFNDSIASSPTRTLAALQSFD-----RPVILIAGGYDKKISF-EVLAKEGIS 380

Query: 409 LADIAIVTDDNPRS--EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                I+  D      E  +K+  +    +P      +  EAI  A E     DV+
Sbjct: 381 HIKHLILLGDTKYKIEEAFKKVMRDSSEDLP-ISICNSIEEAINIAKENGESGDVV 435


>gi|330964055|gb|EGH64315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 448

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 119/361 (32%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G               
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLG------------ 145

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P  + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 146 -PPALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    +         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKFLAFQFDNLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++   +         A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLRERNGVDYYNDSKATNVGAALAAIEGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +P  I       A   + E+    D ++
Sbjct: 366 APVAQYCRAAVL-----LGRDAELIAQALGDAVP-LIRVDTLQAAAERSAELAQHGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|301300388|ref|ZP_07206590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851990|gb|EFK79672.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 437

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 97/267 (36%), Gaps = 20/267 (7%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +          TN+   HIDYH T++ Y NAKMR+       +   + + D+   +E+ +
Sbjct: 156 ITEYHPKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQTEDDYFVVNW-DNEEWQELSQ 214

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R+         +G      ++      + + ++    + K       +PG   V NAL A
Sbjct: 215 RSKARIVPFSRLGKSKGGAYVADGYLFYKEDKIMPVDDIK-------VPGTHNVENALAA 267

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +    G  +  + E L     V  R ++V T +         A    + E  L     
Sbjct: 268 IAVAKIFGKSNEDIKEVLTTFSGVRHRTQYVTTLNGRKFYNDSKATNMEATEKALAGF-- 325

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIP 437
                 +V+   G DR      +   +   +  + +        E  + +       G+ 
Sbjct: 326 ---NNPVVLLAGGLDRGFTFEKLEPSLKNKVHAMIVF------GETADLMAKAGKEAGVE 376

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I+  + + A+  A ++ N+ DV+++
Sbjct: 377 KIIKTKDAVSAVPEAYKVSNEGDVILL 403


>gi|47566647|ref|ZP_00237469.1| FolC family protein [Bacillus cereus G9241]
 gi|47556677|gb|EAL15009.1| FolC family protein [Bacillus cereus G9241]
          Length = 433

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 113/387 (29%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  +G     +H +                 +D         +       + A + +   
Sbjct: 221 LYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--- 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADETIFTT----FAFDRAISADKLASYSKKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EML + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMLGENDVFIITG 417


>gi|116618590|ref|YP_818961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271210|sp|Q03W34|MURD_LEUMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116097437|gb|ABJ62588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 449

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/352 (17%), Positives = 114/352 (32%), Gaps = 41/352 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AVTG++GK++  S ++ + +  G +    G      S      LT    + L  
Sbjct: 109 FNGRLIAVTGSNGKTTTTSLIRDMLKADGQNVITAGNIGVPVSEVV-FDLTREDTLLL-- 165

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                          E SS  L    L  I+      TN+  +H+DYH+T+  Y  AK R
Sbjct: 166 ---------------ELSSFQLL--GLPDIQPDIALVTNIFSNHLDYHKTRANYVAAKFR 208

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +       +   +            ++  N     +    + K          +      
Sbjct: 209 ITRHQNANQYLVLNADGQDT-----EKFKNETEAQVLEFSRTKQHFPVAFSNGNLTLTDE 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I +  KD   + P        N L A  +    G+    + E L+    V  R +++ T 
Sbjct: 264 IVMPTKDIKLVGPH----NQENILAAVTVANLAGVSKPAIREVLKTFSGVAHRLQYLFTA 319

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                     A     +E     + +     I +  G     D  +  ++  +    A I
Sbjct: 320 GDVKYYNDSKAT---DIEATQTALDSFDCPTIWIGGGLERGDDLER--LLPNLKNVKAVI 374

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A+        E  +KI           I   +   A   A+++ +  DV+++
Sbjct: 375 AV-------GETQQKIVTLAREAGKPVIAVTDVEHAAPVAVQLASPGDVVLL 419


>gi|71734389|ref|YP_276232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|118595674|sp|Q48EF6|MURD_PSE14 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71554942|gb|AAZ34153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322452|gb|EFW78545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330079|gb|EFW86066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330874996|gb|EGH09145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 448

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 124/361 (34%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLL 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+++++ G  G +      +  
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGKLVLIAGGDG-KGADFSALRA 366

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +A +    A++        D E I   +   +   +       A+  +  +  + D ++
Sbjct: 367 PVA-EHCRAAVL-----LGRDAELIAQALGDAVT-LVRVDTVQAAVEQSARLAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|30022545|ref|NP_834176.1| folylpolyglutamate synthase [Bacillus cereus ATCC 14579]
 gi|29898103|gb|AAP11377.1| Folylpolyglutamate synthase [Bacillus cereus ATCC 14579]
          Length = 433

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++           V     GL   R D   +I  
Sbjct: 102 KLVKPVVEKLDETDLGEATEFEIITVMAICYFGKFNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              + +          +               + +         G   +    V      
Sbjct: 221 LYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +    +     GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEEIRTGYQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIAENDVFIITG 417


>gi|256847983|ref|ZP_05553427.1| folylpolyglutamate synthase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715043|gb|EEU30020.1| folylpolyglutamate synthase [Lactobacillus coleohominis 101-4-CHN]
          Length = 439

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/405 (15%), Positives = 120/405 (29%), Gaps = 45/405 (11%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R FL    +   G+     + VTGT+GK SV +  +QI    GL+              +
Sbjct: 29  RLFLQRLGNPQRGQ---RYIHVTGTNGKGSVVAMTRQILMEQGLTVGSFTSPFITRFNER 85

Query: 159 DNRLTTPSP-------------------------------IYLAKALSYLSSQGVTHVSV 187
                 P                                 I  A    Y +   +  V +
Sbjct: 86  IAINGEPIADQDLLHYVQQVAPVVEALDKELPAGGPTEFEIDTAIMFCYFADHDLDVVIL 145

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E    GL          +  +   +G DH+ Y  +  A    +     +         + 
Sbjct: 146 EVGIGGLYDSTNVIESPVVTAIVTVGYDHMKYLGSTIADIARQKAGIIKNGVPMVTGNLP 205

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D       + + H+         ++   +  + +    +   + +  E           
Sbjct: 206 NDSQRVVTQVAKEHDCTVYQFGRDFRTTLVGHQTIYPELSYSGLQLHNERYRLSLAGDYQ 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTS 366
                    +A     A G+           L+   PGR E V   ++   I +D AH  
Sbjct: 266 LANCGIAVTLAQLFMQADGLKLDQRAVRQALLNTKWPGRMELV---NQEPMIILDGAHNL 322

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTDDNP----R 421
             ++ + + IR    G  + V       D+    ++G++A      I + T + P    +
Sbjct: 323 PGMQALTETIRDDFKGHEVYVLVAI-LADKQYELMLGELASLSNVHITVTTFEGPYAGRK 381

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           S D   +   I    P      +  +A       ++  DV+++ G
Sbjct: 382 SADLGAVVKMIPSHHP-IQMVPDWQQAFAKLATQVSTDDVILITG 425


>gi|256422087|ref|YP_003122740.1| FolC bifunctional protein [Chitinophaga pinensis DSM 2588]
 gi|256036995|gb|ACU60539.1| FolC bifunctional protein [Chitinophaga pinensis DSM 2588]
          Length = 428

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 107/382 (28%), Gaps = 32/382 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
           +H    + V GT+GK S +  +  + Q++G  +        +    +             
Sbjct: 43  QHKFKSIHVAGTNGKGSTSHMLAALFQQAGYKTGLYTSPHLLDFRERIRINGEMVSKEFV 102

Query: 164 ----------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                           +   + +A A  Y + + V    +E    G      + I     
Sbjct: 103 VAFVEQMQPAIESLEPSFFELTVAMAFQYFALEQVDIAIIEVG-LGGRLDSTNIITPELS 161

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+           ++     +       A   ++             A    
Sbjct: 162 VITNISYDHMHILGNTLPEIASEKAGIIKANVPVVIAQTQSEIESVFIDKAAFLGAPIHF 221

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AGLCIAI 325
               +  +     +       Q             L        +   L A         
Sbjct: 222 ADQEWLIQETEFAQGQLKLGLQHTHSGDMKTIRTDLSGQYQMKNIMGVLSAWKILQKAGW 281

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
            +    VL  L  +  + G      T +       D  H    +  I++ ++ +    + 
Sbjct: 282 ELPEQTVLTALSHVKKLTGLRGRWETVAHDPLTIFDVGHNEAGITEIVQQLQHMVYRHLH 341

Query: 386 VVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +V G   D++  K  P+    A      A +    PR+ D +++                
Sbjct: 342 IVTGFVKDKEVNKVLPLFPTAATYYFCKAQL----PRAMDQQELAELAQQHGLRGHAYET 397

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             +A +TA +  +K D+++V G
Sbjct: 398 VQQAFQTAKQQAHKDDIVLVCG 419


>gi|258651728|ref|YP_003200884.1| FolC bifunctional protein [Nakamurella multipartita DSM 44233]
 gi|258554953|gb|ACV77895.1| FolC bifunctional protein [Nakamurella multipartita DSM 44233]
          Length = 515

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 16/134 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+     I VD AH  +    +   +    +  R++ V    GD+D      
Sbjct: 371 PGRLERVRTSPT---IMVDAAHNPHGAAALAAALAAEFSFTRLVGVLAVLGDKDVHG--- 424

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +   D  D  +VT + +PRS  P ++ A      G           +AI  A+E+   
Sbjct: 425 ILEALADSFDEVVVTRNSSPRSMPPAELAALAEDVFGDGVVHVAERMDDAIALAVELAET 484

Query: 459 Q--DV----LVVAG 466
              D     +V+ G
Sbjct: 485 GVEDTSGTGVVITG 498


>gi|115372803|ref|ZP_01460109.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823487|ref|YP_003955845.1| UDP-n-acetylmuramate--l-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370284|gb|EAU69213.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396559|gb|ADO74018.1| UDP-N-acetylmuramate--L-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 475

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 132/416 (31%), Gaps = 54/416 (12%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           A+ +V+SSA    +    A  +   P++     R   L+           +  +AV G+ 
Sbjct: 77  ADVVVISSAVKKDNPEVVAARQRKIPVI----PRAEMLAELMRL------KYAVAVAGSH 126

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +   +GL    +     ++    + +L     + +    S  S      
Sbjct: 127 GKTTTTSMVATVLSAAGLDPTAV-VGGKVNVLDSNAKLGKSELMVVEADESDGSFLK--- 182

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +       TN+  +H+D++ T      A    F   +P     
Sbjct: 183 -----------------LHPSIAVVTNIDPEHMDHYGTLDVLQTA-FVEFCNRVPFYGLN 224

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  D    + ++ R         S       +    +     + Q     +    +F  
Sbjct: 225 VLCLDHPNVQALLPRLEKRAVTYGSSHMADYRLEGVTLEGFTTRFQ-AFRRDEPLGEFRV 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G     NAL    +   + I   +V   L +   V  RF   G    G  +  DY H
Sbjct: 284 RMVGAHNALNALAVIAVAEEMEIPLDMVRGALAEFGGVQRRFTVRG-EVGGVTVVDDYGH 342

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               +   L   R     R++V F     R      ++ + A     +D+  VT      
Sbjct: 343 HPTEVMATLAGARKAFGRRLVVAF--QPHRYTRTHDLLKEFATSFNDSDVLFVTSVYGAG 400

Query: 423 EDP----------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E+P          E IR      +    ++ +   A+   +    + D+++  G G
Sbjct: 401 EEPIPGATGDVLAEAIRDHGHRDVTFVEKRMDLPAALAQRVM---EGDLVLTLGAG 453


>gi|68249688|ref|YP_248800.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260581812|ref|ZP_05849608.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|81335883|sp|Q4QLF7|MURC_HAEI8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68057887|gb|AAX88140.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260095005|gb|EEW78897.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|309973394|gb|ADO96595.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2846]
          Length = 475

 Score = 55.7 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 120/376 (31%), Gaps = 41/376 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA    +    A+ +   P++      + L+      +G   
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG--- 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I       +                +           A 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIAE 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  S     H+    S                   TN+  DH+D ++       A    F
Sbjct: 174 ADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +                 I   +           I 
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VIC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   R
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIR 335

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDL 409
                R+  DY H    +++ +K  R     + IV+        + +       ++   L
Sbjct: 336 PNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLS-L 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|121595963|ref|YP_987859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acidovorax
           sp. JS42]
 gi|120608043|gb|ABM43783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax sp.
           JS42]
          Length = 498

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 122/386 (31%), Gaps = 48/386 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L        G  P  +LA+TGT+GK++V S    + + +       G           
Sbjct: 100 QALREL-RAGQGYAPA-VLAITGTNGKTTVTSLTGLLVECADKRVAVAGNIGPTLLDTLA 157

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             +   +   +                +E SS  LD   + G +  A +  N+ +DH+D+
Sbjct: 158 QHIDAGTLPEV--------------WVLELSSFQLD--GVQGFEPTAAAVLNITQDHLDW 201

Query: 220 HQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           H + QAY  AK         ++     A + A       V  +       V   G   + 
Sbjct: 202 HGSLQAYAQAKGRIFGETGLMVLNREDAEVMALLPPPVRVKLQKPQLRAHVTFGGDMPQR 261

Query: 277 IHLKKVCAIHNK------------------QQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                +  +                     Q   + ++         + G     NAL A
Sbjct: 262 PGDFGIEVVSGMAWLVRAHEADETAKRGKAQDAELHIQRLMPADALRIRGRHNAINALAA 321

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G   A +L  L +    P R E VG                 +       +  
Sbjct: 322 LALAQAAGCPLAPMLYGLREYRGEPHRVESVGIVREVEYFDDSKGTNVGATVA---ALTG 378

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           + + R +VV   G  + Q   P+   +A   A   ++        D  +IRA +      
Sbjct: 379 LGADRRLVVILGGDGKGQDFSPLAAPVA-RYARAVVLI-----GRDAPQIRAALQGCGVP 432

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +     EA++ A +  +  D +++
Sbjct: 433 LQDAATLPEAVQLATQRAHAGDAVLL 458


>gi|291543273|emb|CBL16382.1| folylpolyglutamate synthase/dihydrofolate synthase [Ruminococcus
           sp. 18P13]
          Length = 424

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 111/396 (28%), Gaps = 36/396 (9%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +T + L   A     +     + V GT+GK SV + +  + + +G S+      +     
Sbjct: 23  DTMQAL--LARMGNPQKGLQSIVVAGTNGKGSVCAMLSAVLEAAGCSAGTYTSPAVFQLL 80

Query: 157 AQDNRLTTPS-------PIYLAKALSYLSSQGVTHVS----------VEASSHGLDQHRL 199
            Q    T+            L +  +   ++   + +             +  G     L
Sbjct: 81  EQYKLGTSCCTAEQFAQACTLVRQGAEALARDGIYPTGFELETAAAFALFAQQGCGLAVL 140

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +          N+  + +    T  A  + +             A I           + 
Sbjct: 141 ECGMGGDLDAVNVAENRLLAVITPIAVDHTRFLGDTPEEIARHKAGIVTPGCPLVTAPQT 200

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    +    G         A+   +     +  K  +    L G    Y    AA
Sbjct: 201 PAVLSVLEDACAAAGSRCIPVPEGALTMLEDTPKGMLLKPEEGEPYLLGLHGAYQCGNAA 260

Query: 320 GLCIAIGIDSAL-------VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
               A    +          +         PGRF+ +G         +D AH  + ++  
Sbjct: 261 VALEACRQLAKAGLPISDGDIRRGFAAARHPGRFQLLGEAPV---FVLDGAHNPHGMDAF 317

Query: 373 LKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRA 430
              +  +  GR I  V G   D+   +   M +     A     VT    R  D  ++ A
Sbjct: 318 CTGLEQMFPGREILAVMGVFRDKAYDR---MLQRLSRTASGLYAVTAPGARGLDARQLGA 374

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                      + + ++ IR A    +   V+ V G
Sbjct: 375 AAEAYFSRVRVEPDPVQGIREAARHSDA--VIAVCG 408


>gi|257068174|ref|YP_003154429.1| folylpolyglutamate synthase/dihydrofolate synthase [Brachybacterium
           faecium DSM 4810]
 gi|256558992|gb|ACU84839.1| folylpolyglutamate synthase/dihydrofolate synthase [Brachybacterium
           faecium DSM 4810]
          Length = 462

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 12/116 (10%)

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-D 417
           +D AH       +++ +R      R + + G   ++D      +  +   L D  ++T  
Sbjct: 332 LDAAHNPAGALTLVETVRENFRFTRTVGLVGILREKDA---AEILDVLEPLLDSVVITQS 388

Query: 418 DNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK-QD---VLVVAG 466
            +PR   ++    I  +I       +E+ +  +AI+ A+++     D    +VVAG
Sbjct: 389 SSPRAIPTDVLADIARDIFQDEDRVVERASLPDAIQAAVDLAETDGDQFGGVVVAG 444


>gi|187933070|ref|YP_001884399.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B
           str. Eklund 17B]
 gi|229486482|sp|B2TI04|MURC_CLOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187721223|gb|ACD22444.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 460

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 16/282 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+DY++            F +L+P +   I Y  D+  KE++ +A  
Sbjct: 178 FPYVGVILNIDADHLDYYKDIDEIT-ETFGQFADLIPNDGYLIGYVGDSRVKEILFKAKC 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                          ++                  K FD     PGE  + NAL +  + 
Sbjct: 237 NTLSYGFENADVTARNIT-FNEKGCASFDVYKHNDKLFDLTLSNPGEHNILNALSSICVS 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   ++   ++  L +      RFE+ G    G  +  DYAH    ++  L   + I   
Sbjct: 296 LIFDVNYDDIICGLSECKGAHKRFEYKG-EVNGVTVIDDYAHHPVEIKATLNTSKKIPHN 354

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHG 435
           +   VF      R +           D AD  ++ D     E          +   +   
Sbjct: 355 KTFCVFQPHTYTRTKTLFDEFTDAFFD-ADEVVLMDIYAAREKDTGLVSSNDLGVALRAK 413

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-----ETV 472
                   +  EA+          D+L+  G G      E  
Sbjct: 414 GVKCTNVHSHDEALEYLKNSAKPNDLLLTVGAGDVVIVGEKY 455


>gi|15896442|ref|NP_349791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum ATCC 824]
 gi|30316107|sp|Q97EB9|MURD_CLOAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15026265|gb|AAK81131.1|AE007815_1 UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           acetobutylicum ATCC 824]
          Length = 462

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 106/359 (29%), Gaps = 43/359 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  I  VTG+ GK++  + +  + +  G  ++  G   T          T    +
Sbjct: 112 FIKYCPAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVGGNIGTPLFSKIKEVSTKDKVV 171

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L       +       TNL  +H+D H+  + Y N
Sbjct: 172 ------------------LELSSFQL---MTIDVSPEVAVVTNLSPNHLDIHKNMEEYIN 210

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F     K +  II  D+  +  +   A     +           +  K       
Sbjct: 211 AKKNIFTH-QSKGNVLIINRDNEITNNMESEALGDLLKFSRNEKVKNGAYYNKQDGNIYL 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  I  +                    +AA   ++  +    +++       V  R EF
Sbjct: 270 FENKICNKDDI------KIKGMDNVKNFMAAFCAVSKDVSKESMIKVAMNFAGVEHRREF 323

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +       L         R +++   G D+     P+    A  
Sbjct: 324 VRELDGVKYYNDSIASSPTRTISGLNAYE-----RPVILIAGGYDKHIPFEPL----AEK 374

Query: 409 LADIAIV-----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             D   V        N   E  +K+  E    +P  I   N  EA+  A ++    D++
Sbjct: 375 GYDKIKVLILMGATKNKIKETFDKVICEKNIKLP-IILSDNLEEAVCEAKKVATNGDIV 432


>gi|330957972|gb|EGH58232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 448

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 117/356 (32%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   ++A+TG++ KS+V + V ++   +G      G   T               +
Sbjct: 103 FARHAKAPVIAITGSNAKSTVTTLVGEMAIAAGKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +    AY  
Sbjct: 150 DLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGLPAYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA S+ ++      G    + G      H   +   + +
Sbjct: 201 AKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNTPDFHGFGLREENGE 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    E         + G     NAL A  L  A+G+    +L  L +   +  R ++
Sbjct: 253 KYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +             A    +    ++ +     G+  +V   GGD        +      
Sbjct: 313 LREREGVHYYNDSKATNVGAALAAIEGLGADIDGK--LVLIAGGDGKGADFSGLRAPVAK 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               A++   +       ++ A+++      +       A+  + E+    D +++
Sbjct: 371 HCRAAVLLGRD------AELIAQVLGDAVPLVRVDTLQAAVGRSAELARSGDAVLL 420


>gi|328882439|emb|CCA55678.1| Dihydrofolate synthase or Folylpolyglutamate synthase [Streptomyces
           venezuelae ATCC 10712]
          Length = 500

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 16/159 (10%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              G   A  +D   V     ++   PGR E V ++     + +D AH  +      + I
Sbjct: 334 FGIGAEHARTLDPDTVRRAFAQVAS-PGRLEIVRSSPT---VVLDAAHNPHGARATAEGI 389

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALD-LADIAIVTDDNPRSEDPEKIRAEIIH 434
                  R+I V    GD+D        +      A++ I  + NPR+ D + + A  + 
Sbjct: 390 SEAFGFSRLIGVVSTSGDKDA---KGFLEAFEPIFAEVVITANSNPRATDVDALAAVAVE 446

Query: 435 --GIPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAG 466
             G    + +    +AI  AI +  +        ++V G
Sbjct: 447 VFGEDRVVVEPRLDDAIEAAITLAEEEAEFGGAGVLVTG 485


>gi|319897394|ref|YP_004135591.1| udp-n-acetylmuramate:l-alanine ligase [Haemophilus influenzae
           F3031]
 gi|317432900|emb|CBY81266.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3031]
          Length = 475

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 135/426 (31%), Gaps = 48/426 (11%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA    +    A+ +   P++      + L+      +G   
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG--- 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I       +                +           A 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIAE 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  S     H+    S                   TN+  DH+D ++       A    F
Sbjct: 174 ADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +                 I   +           I 
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VIC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   R
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIR 335

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDL 409
                R+  DY H    + + +K  R     + IV+        + +       ++    
Sbjct: 336 PNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ- 394

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D     E P      + +   I + G    I   +  +      +++   D++
Sbjct: 395 VDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILISDTSQLGDVLDQIIQDGDLI 454

Query: 463 VVAGKG 468
           +  G G
Sbjct: 455 LAQGAG 460


>gi|134095975|ref|YP_001101050.1| D-alanine:D-alanine-adding enzyme [Herminiimonas arsenicoxydans]
          Length = 371

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 112/308 (36%), Gaps = 15/308 (4%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            L   AS    +    ++ VTG++GK++V   +  I   +      +      ++     
Sbjct: 2   ALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRGNFNNDI--- 58

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                 P+ L +  +   +     + +  +  G         +   G   N  R+H ++ 
Sbjct: 59  ----GVPLTLLRLNAACKAA---VIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFM 111

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           ++ +A            LP +  A+  ADDA++     R++ A  + L+ G+        
Sbjct: 112 ESVEAVAQENG-AVLASLPADGVAVFPADDAFTPLW--RSYAAQRKTLTFGFSADADVRC 168

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
              A      ++++   + F       G   V NAL A    +AIGI    ++  L+   
Sbjct: 169 TYAANVFGNDMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFA 228

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGK 398
            V GR +     S    I   Y    +S+   +  +  + S RI+V+   G  G+  +  
Sbjct: 229 PVSGRLQRKLAASGALVIDDTYNANPDSVRAAIDVLAQMASPRILVLGDMGEVGNDGRQY 288

Query: 399 RPIMGKIA 406
              +G  A
Sbjct: 289 HEEIGAYA 296


>gi|21672874|ref|NP_660939.1| UDP-N-acetylmuramate-alanine ligase [Chlorobium tepidum TLS]
 gi|25453121|sp|Q8KGD5|MURC_CHLTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21645925|gb|AAM71281.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium tepidum TLS]
          Length = 475

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 124/430 (28%), Gaps = 56/430 (13%)

Query: 56  GHLFIPQAIAQGAEAIVV----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
           GH    QA   GA  +VV        S  +  A  +   P++  D   + L        G
Sbjct: 60  GH----QAENVGASDVVVYSSAVRPESNVEILAAQKLGIPVIKRD---EMLGELMRHKSG 112

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 + V+GT GK++  + V  +   +G   +  IG  S     +          I  
Sbjct: 113 ------ICVSGTHGKTTTTAMVATMLLEAGQSPTVMIGGVSDYLKGSTVVGEGKSMVIE- 165

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                                   +  R         +  N                   
Sbjct: 166 ----------------------ADEYDRAFLKLTPTIAVLNSLESEHMDTYGTMDNLRDC 203

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F   +P     I   D    + ++ R +          +        ++        
Sbjct: 204 FAEFANKVPFYGRVICCVDWPEIRRIIPRLNRRYTTFGIEEHADVM--ASEIEPGDGGST 261

Query: 291 VTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            T+   G+ +      +PG   V NAL A  + + IG+    ++  L +   +  RF+  
Sbjct: 262 FTVEAFGERYPGVRLNVPGRHNVLNALAAFSVGLEIGLPPERIIAGLARYSGMRRRFQVK 321

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIAL 407
              + G  +  DYAH    ++  ++  R      RI+ VF      R        G    
Sbjct: 322 YRGADGVLVIDDYAHHPTEVKATVRAARDGWKEHRIVAVFQPHLYSRTAEFAGEFGWALS 381

Query: 408 DLADIAIVTDDNPRSEDPEK---IRAEIIHGIPGFIEKGNR-----IEAIRTAI-EMLNK 458
             AD   V    P  E  E    I  E++          N       EA+  A+ E    
Sbjct: 382 R-ADTVYVAGIYPSREKAEDYPGITGELVAEASRTAGAKNVWFTEEHEALLAALQEEAAP 440

Query: 459 QDVLVVAGKG 468
           + + +  G G
Sbjct: 441 ETLFLFMGAG 450


>gi|325202511|gb|ADY97965.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis M01-240149]
          Length = 424

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 118/396 (29%), Gaps = 35/396 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVGEVKKRMKLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEA------------SSHGLDQHRLDGIKLIA 206
                 P       A           +S+                  +D   L+      
Sbjct: 84  IAINAEPVSDDTIIASFERIEAAHGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGR 143

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-------PKESPAIIYADDAYSKEVMKR 259
               N          +      A +    E +        +     I   +     ++  
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQAFLGDTVEQVGLEKAGVFRSGKPAICGQNPAPASLVAH 203

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   G ++L V  +    H  +    + + +   S          P P     Y    AA
Sbjct: 204 AEAIGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDNPARNRNALPFPALRGTYQLSNAA 262

Query: 320 GLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
                +   +  +   +        L   PGRF+ +          +D  H  ++   + 
Sbjct: 263 CTLTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALR 319

Query: 374 KNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAE 431
           +++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ +
Sbjct: 320 RSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQNK 376

Query: 432 IIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    I       +  EA R A     + D +VV G
Sbjct: 377 LHEHSIENIQTFASVREAYRAAASKAGENDRIVVFG 412


>gi|171316209|ref|ZP_02905432.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098623|gb|EDT43420.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 465

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 78/429 (18%), Positives = 134/429 (31%), Gaps = 52/429 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHP 114
           GH     A   GA A+VVS+A    +       +  + +V   R   L+       G   
Sbjct: 56  GHD---AANIAGANAVVVSTAVRSDNPEVLAARHQGVPIVQ--RAVMLAELMRLKQG--- 107

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +A+ GT GK++  S V  +    G   +F IG    + S   + RL T   I     
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIG--GRLISAGANARLGTGDFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  +    TN+  DH+D +    A        
Sbjct: 163 ESDASFLN--------------------LYPVIEVITNIDADHMDTYGHDFARLKQAFIE 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + LP    A++  DD   ++++        R                          I
Sbjct: 203 FTQRLPFYGSAVVCVDDPNVRQIIPFISKPVVRYGLSPDAQVRAEDIDAR-DGRMHFTVI 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                    +  LPG   V NAL A  +   +G+    +   L + + V  RF+  G   
Sbjct: 262 REGRAPLAVVLNLPGLHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVP 321

Query: 354 R----GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +  DY H    +   +   R    GR  +V      R    R         L
Sbjct: 322 SADGGQYTLIDDYGHHPVEMAATVAAARGAFPGRR-LVLAFQPHRYTRTRDCFDDFVNVL 380

Query: 410 A--DIAIVTD------DNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIE-MLNKQ 459
           +  D  ++T+          + + + +   +   G    +   +  + +  A+  +    
Sbjct: 381 STVDALVLTEVYAAGEAAIATANGDALSRALRAVGKVDPVFVASV-DGVPDALAGVARNG 439

Query: 460 DVLVVAGKG 468
           DV++  G G
Sbjct: 440 DVVITMGAG 448


>gi|121634491|ref|YP_974736.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria meningitidis FAM18]
 gi|120866197|emb|CAM09937.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria meningitidis FAM18]
 gi|254673618|emb|CBA09152.1| FolC bifunctional protein [Neisseria meningitidis alpha275]
 gi|325131853|gb|EGC54553.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis M6190]
 gi|325137903|gb|EGC60478.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis ES14902]
          Length = 424

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 126/397 (31%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++ QI +++G     +     +    +
Sbjct: 24  LERVGEVKKRMKLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAVNAEPVSDDTIIASFERIEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +    G    +    +D+          ++   +  + +     I   +     ++ 
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPASLVA 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V    +F  L+ +   + +     S +        P P     Y    A
Sbjct: 203 HAEAIGAKLLMVQRDFEFHALENIQ-WNYRFHPQHSDDPTRNRNALPFPALRGAYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +   +  +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACTLTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ 
Sbjct: 319 RRSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQN 375

Query: 431 EI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++  HGI          EA R A     + D +VV G
Sbjct: 376 KLHEHGIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|56551725|ref|YP_162564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|62900668|sp|Q5NPA7|MURD_ZYMMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56543299|gb|AAV89453.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 441

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 125/412 (30%), Gaps = 83/412 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           G  A VVS    +        +     PI+   +   F    A   + +H      + +T
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQ--AHGFWERHGRRCPVVGIT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +  I + +GL +   G        A                        
Sbjct: 129 GTNGKSTTTALIHHILKEAGLPTLMGGNIGLPLLAADPLPDG------------------ 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +E SS+ +D      +       TN+  DH+D H   + Y  AK RLF       
Sbjct: 171 -GVYVLELSSYQIDL--TFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPH 227

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I   D                             + K  A H       ++  +D  
Sbjct: 228 YAVIATDDIPSQV------------------------IAKQSAAHLVTVHADNISAEDQV 263

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G     NA++A  +   +GI   ++ + L     +P R + +G       I   
Sbjct: 264 NWPNLQGPHNAQNAVLAMAVAHILGISDDVISKALISYAGLPHRMQKIGERRGVLFIDDS 323

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--------RPIMGKIALDLADIA 413
            A  + +    L     I    I+       D D  K           +G+   D A   
Sbjct: 324 KATNAMATAPALAAFPAIHW--ILGGVPKTADLDPCKAFYNHIRQAYTIGQAGPDYA--- 378

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                        ++  E   G+   +E G   +A+R A E     +V+++ 
Sbjct: 379 -------------QLLRE--AGV-NVVECGTLEKAVRLAAEEAQPDEVVMLT 414


>gi|329115578|ref|ZP_08244300.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
 gi|326695006|gb|EGE46725.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
          Length = 498

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 91/282 (32%), Gaps = 19/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  +    TN+  +H+D+  + +A   A    F   +P    A++  D    ++++ R  
Sbjct: 195 LPSVISVVTNMDPEHLDHWGSPEAMEAAY-DQFVSNVPFYGFAVLCIDHPAVQQMIPRLS 253

Query: 262 NAGCRVLSVGYQGKFIHLKKVC------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          Q      K +                     K   F  P+ G   V NA
Sbjct: 254 DHRIVTYGFSPQADVRAEKLITDKLGATFEVTLTDRVSRHTRKAGPFRLPMLGSHNVQNA 313

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +   + I   ++   L     V  RF   G  + G  +  DY H    +  +LK 
Sbjct: 314 LAAIAVATEMDISDDVIRSGLASFRGVKRRFTRTG-EAGGITVIDDYGHHPVEIAAVLKA 372

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R   +  +I V      R    + +       +  AD  IV+D     EDP      +K
Sbjct: 373 ARQAGANHVIAV--MQPHRYSRLKILFSDFCACMNDADTVIVSDVYAAGEDPLPDASRDK 430

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   +   G    +   +          +    D +V  G G
Sbjct: 431 LIEGLRERGHRSVVPLSSPDHLAEMINAIAKPGDYVVCLGAG 472


>gi|15602008|ref|NP_245080.1| UDP-N-acetylmuramate--L-alanine ligase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431689|sp|P57818|MURC_PASMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12720360|gb|AAK02227.1| MurC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 482

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 132/423 (31%), Gaps = 48/423 (11%)

Query: 63  AIAQ--GAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENIL 118
           A     GA  +VVSSA    +           P++      + L+      +G      +
Sbjct: 77  AAENIDGASVVVVSSAIRADNVEVVAAQERRIPVIQRA---QMLAEIMRFRHG------I 127

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV GT GK++  + +  I   +GL    +     + S   +  L                
Sbjct: 128 AVAGTHGKTTTTAMISMIYAEAGLDPTFV-NGGLVKSAGTNAHLG--------------- 171

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                 ++    S     H    ++ +    TN+  DH++ +             F   L
Sbjct: 172 -CSRYLIAEADESDASFLH----LQPMVSVVTNIEPDHMETYHGSFEEMKHTYVNFLHNL 226

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P    A++ ADD    E+  +                 I   +           I+  G+
Sbjct: 227 PFYGLAVLCADDDVLTELTPKVGRQVITYGFSEKADYRIEDYQQTGFQGHYT-VITPSGE 285

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-- 356
             D L  +PG     NA  A  +    GI +  +L  L        RF+ +G   R    
Sbjct: 286 RIDVLLNVPGRHNALNATAALVVAKEEGIGNEAILAALADFQGAGRRFDQLGQFIRPNGK 345

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIA 413
             +  DY H    + + ++  R     + I +        + +       ++     D+ 
Sbjct: 346 VMLVDDYGHHPTEVGVTIQAARQGWENKRIAMIFQPHRYSRTRDLFDDFVQVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I+ D     E P        +   I + G    I   +  +      ++L   D+++  G
Sbjct: 405 IMLDVYAAGETPIAGADSRSLCRSIRNLGKVDPIFVSDHRQLGEILDQVLQDGDLILAQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|152976274|ref|YP_001375791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|189082871|sp|A7GRN8|MURD_BACCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152025026|gb|ABS22796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 451

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 134/416 (32%), Gaps = 52/416 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASR 108
             +  A+G + +       L + +  +    P +   N     +             A R
Sbjct: 49  AAELQAKGMDVVCGGHPLELLERNIALVVKNPGIPYSNPLLVAATEKQIPIITEIELAYR 108

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           +        + +TG++GK++      ++ +         G   T++              
Sbjct: 109 ISEAP---FIGITGSNGKTTTTMLTFEMLKEGEKHPAIAGNIGTVACEV----------- 154

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                    +++    +  E SS  L    ++  +    +F NL   H+DYH T++ Y  
Sbjct: 155 -------AQAAKANEVLVTELSSFQL--MGVETFQPKIAAFLNLFEAHLDYHGTKKEYGL 205

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+     +   I  ADDA   E+   +        +         +K+       
Sbjct: 206 AKANIFKNQTAADYSVI-NADDADVMELSANSKGQKILFSTTKEIEDGACIKENALY--- 261

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                  E         LPG+  + N L A  +   +G+ +  ++  L++   V  R E+
Sbjct: 262 ----FKGEKVVEIKDIVLPGKHNLENILAAMSIAKLLGVANEAIVAVLKRFTGVKHRLEY 317

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V T           A    + E  L    +      +++   G DR      ++      
Sbjct: 318 VTTIHNRKFYNDSKATNILATEKALSAFTS-----PVILLAGGLDRGNEFDDLIPYF-EQ 371

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AIVT        P+ + A    G+       +  EA+  A       DV+++
Sbjct: 372 HV-KAIVTYGQTA---PKLVHAAEKAGLAIIEAVHHLEEAVERAYAHSADGDVILL 423


>gi|271968520|ref|YP_003342716.1| FolC bifunctional protein [Streptosporangium roseum DSM 43021]
 gi|270511695|gb|ACZ89973.1| FolC bifunctional protein [Streptosporangium roseum DSM 43021]
          Length = 440

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V     G  + VD AH    ++  L+ ++      ++I V     D+D      
Sbjct: 296 PGRLEVVRR---GPTVLVDAAHNPGGIQATLEAVQESFDFAKLIAVVAVFEDKDVQG--- 349

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK 458
           + ++   + D  +VT + +PRS D +++ A      G+    +      AI  AI M++ 
Sbjct: 350 ILELLEPMVDEIVVTRNSSPRSMDVDELAALAEEIFGLDRVHQVERLDSAIDRAIGMVDA 409

Query: 459 -----QDVLVVAG 466
                   +++ G
Sbjct: 410 LGEFSGAGVLITG 422


>gi|94967150|ref|YP_589198.1| FolC bifunctional protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549200|gb|ABF39124.1| FolC bifunctional protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 447

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 11/194 (5%)

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC----IAIGIDSALVLEHL 336
               +  + +  + V  +  +   PLPG  Q+ N  +A              ++  +E  
Sbjct: 241 DYRDVEGRNRYPLEVMNEIIEVNSPLPGRHQLRNLALAITTAEELARFGFPVTSKQIEQG 300

Query: 337 EKLHVVPGRFEFVGTNSR--GGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGD 393
            +     GRF+ +          +  D AH  +    +   +    + R + +VFG   D
Sbjct: 301 IRETRWAGRFQVISAEKNALKRELIFDVAHNPDGAWALRSALSDKIAERPLTLVFGAMHD 360

Query: 394 RDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +       M +I    A   IVT   NPR+    ++           ++  +   A+  A
Sbjct: 361 KAF---REMVQILFPTAQQVIVTQAKNPRAATTAELAEVAKEVGTEVVQCASVEAAVHKA 417

Query: 453 IEMLNKQDVLVVAG 466
            E+  +  V+VV G
Sbjct: 418 PELTAENGVIVVTG 431


>gi|28871545|ref|NP_794164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|38257960|sp|Q87WY3|MURD_PSESM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28854796|gb|AAO57859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016732|gb|EGH96788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 448

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 120/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKFLAFQFENLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLSSLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++   +         A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLRERNGVDYYNDSKATNVGAALAAIEGLGSDIGGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +P  I       A   + E+  + D ++
Sbjct: 366 APVAKYCRAAVL-----LGRDAELIAQALGDAVP-LIRVDTVQAAAERSAELAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|301055964|ref|YP_003794175.1| folylpolyglutamate synthase [Bacillus anthracis CI]
 gi|300378133|gb|ADK07037.1| folylpolyglutamate synthase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 433

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 109/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENHAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMIGENDVFIITG 417


>gi|254673378|emb|CBA08656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha275]
          Length = 210

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 13/194 (6%)

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSA 330
              F    +      ++   +    +D      +P +      N + A  LC A+G+   
Sbjct: 1   MKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNATNVMAAVALCEAVGLPRE 60

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LEH++    +P R E +G  +    I         +    +  ++       + V   
Sbjct: 61  ALLEHVKTFQGLPHRVEKIGKKNGVVFIDDSKGTNVGATAAAITGLQ-----NPLFVILG 115

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G  + Q   P+   +A   A    +        D  +IR ++        +     EA++
Sbjct: 116 GMGKGQDFTPLRDALAGK-AKGVFLI-----GVDAPQIRRDLDGCDLNMTDCATLEEAVQ 169

Query: 451 TAIEMLNKQDVLVV 464
            A       D++++
Sbjct: 170 KAYAQAEAGDIVLL 183


>gi|167764155|ref|ZP_02436282.1| hypothetical protein BACSTE_02539 [Bacteroides stercoris ATCC
           43183]
 gi|167698271|gb|EDS14850.1| hypothetical protein BACSTE_02539 [Bacteroides stercoris ATCC
           43183]
          Length = 461

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 118/364 (32%), Gaps = 41/364 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +A
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLFHQSHVGCTAF-LGGISKNYGTNLLLSPASPYTVIEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             +  S       +                      T+   DH+D + T++AY  +    
Sbjct: 170 DEFDRSFHWLSPYMSV-------------------ITSTDPDHLDIYGTREAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVT 292
              + P  +  I           ++     G R  +        H + +           
Sbjct: 211 TTLIQPGGALIIRKGL------ALQPDVQPGVRTYTYSRDEGDFHAENIRIGNGEIVIDF 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I+ + +  D    +P    + N + A  L    G+    + + +     V  RF+F    
Sbjct: 265 IAPDTRINDIRLGVPIGINIENGVAAMALAHLNGVTDEEIRQGMASFRGVDRRFDF-KIK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-- 410
           +       DYAH    +   +K+IR +   + I          +  R      A  L+  
Sbjct: 324 TDRLVFLSDYAHHPAEIAQSVKSIRELYRDKKITAIFQPHLYTRT-RDFYKDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+T+  P  E P      + I   +  GI   I    R E I   +      +VL+V
Sbjct: 383 DEVILTEIYPAREQPIPGVSSQLIYDNLRPGIEKCIC---RKEDIPDLLSK-KPVEVLIV 438

Query: 465 AGKG 468
            G G
Sbjct: 439 LGAG 442


>gi|240144337|ref|ZP_04742938.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|257203680|gb|EEV01965.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|291540809|emb|CBL13920.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           XB6B4]
          Length = 459

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 85/275 (30%), Gaps = 10/275 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  +H+D+ +  Q   N+  R F     K+   II  +     E+    
Sbjct: 176 HFYPRYSVILNVEAEHLDFFKDIQDIRNS-FRKFAGNTKKDGAIIINGEIENYTELTSGL 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                          +                +       D    +PG   V NAL A  
Sbjct: 235 DPQVITFGLNDSCDYYPSDITFDETACASFTAMHHGTPVMDVKLHVPGMHNVSNALAAIA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L + +GI +  +L  L        RF++ G    G  I  DYAH    +   L   +   
Sbjct: 295 LSLDLGISTDAILAGLSAFGGADRRFQYKGC-VDGVTIIDDYAHHPTEIRATLTAAKNYP 353

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
             R+++ F      R +        +   +AD+ ++ D     E          I A++ 
Sbjct: 354 HKRLVLAFQPHTYSRTKAFLDDFADVLS-MADVVVLADIYAAREKNTYDISSRDILAKLK 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +  E  +  ++     D+L+  G G
Sbjct: 413 EKGTECYYFPSFEEIEKFLLKNCINGDLLITMGAG 447


>gi|49474455|ref|YP_032497.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella quintana str.
           Toulouse]
 gi|59798260|sp|Q6G125|MURC_BARQU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49239959|emb|CAF26364.1| UDP-N-acetylmuramate--alanine ligase [Bartonella quintana str.
           Toulouse]
          Length = 475

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 91/283 (32%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+ R+H+D++ +  A   A  R F E +P    A++  D    + +  R  
Sbjct: 173 LPADIAVVTNIDREHLDHYGSFCAVREA-FRQFVENVPFYGFAVLCLDHPEVQSLASRID 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNA 315
           +          Q     L                  K            P+ G+  V NA
Sbjct: 232 DRWVITYGTNPQADIRFLNLSMDGQKTHFDVFIRSRKTGKETELKNLVLPMSGQHNVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +GI +  + + L +   V  RF   G + RG  I+ DY H    ++ +L  
Sbjct: 292 TAAIAIAHELGISNESIKKGLAEFGGVKRRFTQTG-SWRGIEIFDDYGHHPVEIKAVLYA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R    GR+I +      R      +    A     AD  ++       E P       +
Sbjct: 351 ARESAKGRVIAIV--QPHRYSRLYHLFDDFAACFNDADTVLIAPIYGAGEAPIAGFGARE 408

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +   I + G           + +          D +V  G G+
Sbjct: 409 LVEHIKMAGHRDVRLIHCLEDVVLIVSTFAKPGDYVVFLGAGN 451


>gi|271964372|ref|YP_003338568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
 gi|270507547|gb|ACZ85825.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
          Length = 465

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 111/377 (29%), Gaps = 55/377 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL        LA+TGT+GK++V   +  +   +G ++  +G   T           
Sbjct: 92  ELAWRLRPAGAAPWLALTGTNGKTTVVRMLTSMLTAAGHAALAVGNVGTPVV-------- 143

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          +     ++VE SS  L  HR   +     +  N+  DH+D+H + 
Sbjct: 144 ------------EAVTGPADVLAVELSSFQL--HRSPSLAPHTAAVLNVAPDHLDWHGSL 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +       R+  E+  +    +  ADD +S  +                 G     +   
Sbjct: 190 E----EYARVKGEIFTRAGTVVHNADDEWSARLAAPYDGGTGARSVGFTLGVPAPGQVGV 245

Query: 284 AIHNKQQVTISVEGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                       +                     V NAL AA +  + G+ +  V + L 
Sbjct: 246 VEDLLVDRAFVADPARHAEELASFDDIRPFAPHNVANALAAAAMARSYGVPAEAVRQGLL 305

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                P R   V        +    A   ++    L    +      IV    G  +   
Sbjct: 306 DFVPDPHRMARVARVGEVDYVDDSKATNPHAAAASLAAYPS------IVWIAGGQLKGAD 359

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---------NRIEA 448
              ++ + A  L    ++  D  R      IR  +                    +R+  
Sbjct: 360 VDDLVRRAAPRLRGAVLLGADRER------IRQALARHAANVPVVEVAGQDTGVMDRV-- 411

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A  +    D +++A
Sbjct: 412 VIEAARLAAPGDTVLLA 428


>gi|262202909|ref|YP_003274117.1| UDP-N-acetylmuramate/alanine ligase [Gordonia bronchialis DSM
           43247]
 gi|262086256|gb|ACY22224.1| UDP-N-acetylmuramate/alanine ligase [Gordonia bronchialis DSM
           43247]
          Length = 529

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 135/446 (30%), Gaps = 51/446 (11%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH   P A+ Q   G   IV + A   +     + +     PIL+     + L+   +  
Sbjct: 65  GHD--PSALDQIPGGPSVIVTTHAAIPKTNPELVAARSRGIPILLRP---RVLAELMAGH 119

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTPSP 167
                   L + GT GK+S  S      Q  G        G  +   + A          
Sbjct: 120 ------RTLLIAGTHGKTSTTSMAVVALQHCGQDPSFAIGGELNESGTNAHHGHDGVFVA 173

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                  S L       V        LD    ++    +   F +   D           
Sbjct: 174 EADESDGSLLEYTPDVVVVTNIDVDHLDFFGTIERYVAVFDDFADRIVDGGTLVVCLDDP 233

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             A +         +    +          +    +    +LS          +      
Sbjct: 234 GAAALGGRVAARLGDRGVAVLGYGEGVHAGLAPGVHHVAHLLSWSASATGGQAR------ 287

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            +    +  E  +F     LPG+    N + A   C  +G D A V+  +     V  RF
Sbjct: 288 VRFTAPLVDEPSEFTVGLTLPGKHMSLNGIGAIIGCARLGADLAGVISGIGAFGGVHRRF 347

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----------GRIIVVFGCGGDRD 395
           EF G    G  +  DYAH    +  +L   R + +           GR+I VF       
Sbjct: 348 EFRG-RCGGVDVIDDYAHHPTEVAAVLTAARDMVTARTDGPATGRAGRVIAVFQPHL--- 403

Query: 396 QGKRPIMG---KIALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIE 447
             +          ALD AD A++ D     E P      +I A+ +H    F    +R+ 
Sbjct: 404 YSRTMEFAGEFATALDHADAAVIADVYGAREQPIPGVSGRIIADRMHIPAQFAPDLSRLA 463

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVH 473
           A     ++    D+++  G G  T+ 
Sbjct: 464 A--QVAQITRPGDIVLTLGAGDITMQ 487


>gi|331268360|ref|YP_004394852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
 gi|329124910|gb|AEB74855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
          Length = 458

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 106/367 (28%), Gaps = 61/367 (16%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  +  +TG+ GK++  + V  + +  G  ++  G          +         
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYNMLKSEGYKTWVGGNIGNPLFANIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           V +E SS  L         +     TNL  +H+D H+  + Y +
Sbjct: 162 ---------EMTKADKVVLELSSFQL---MTIKEDMNCALVTNLSPNHLDIHKDMEEYVD 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F+     +   +   D+  + +++  A     +           + K        
Sbjct: 210 AKKNIFKYQNENDLLVL-NKDNKITNDLVNEAKGKVKQFSIKEEIHNGAYFKNDKLFILD 268

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           ++V    E K                 L+AA   +   +    + +       V  R EF
Sbjct: 269 KEVCALEEIK--------LKGMHNVENLLAAFCLVNEDVSINNMRKVAISFTGVEHRCEF 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A +       L+        + +++   G D+     P+    A +
Sbjct: 321 VRELDGVKYYNDSIASSPTRTIAGLRAFE-----KPVILIAGGYDKHIPFEPL----AEE 371

Query: 409 LADIA---IVTDDNPRSEDPEKIRAEIIHGIPGFIE----------KGNRIEAIRTAIEM 455
             D     I+T            + +I       IE               EAI  A E+
Sbjct: 372 GYDKIKALILTG---------VTKEKIKKAFDNVIENKPYKIPIYMVERFEEAIYKAKEI 422

Query: 456 LNKQDVL 462
               D++
Sbjct: 423 SKAGDIV 429


>gi|322834419|ref|YP_004214446.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
 gi|321169620|gb|ADW75319.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
          Length = 495

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 142/447 (31%), Gaps = 67/447 (14%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 83  ASVVVVSTAISSDNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 131

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 132 HGKTTTTAMVTSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRFLIAEADESDASFLH-- 188

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 189 ------------------LQPMVAIVTNIEADHMDTYQGDFEILKQTFINFLHNLPFYGR 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +    +       
Sbjct: 231 AVMCIDDPVIRELIPRVGRHMTTYGFSEDADVIIENYRQVGAQGHFTLR-RQDLPLISVT 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  A  +     I    +L  L        RF        E V   +  
Sbjct: 290 LNAPGRHNALNAAAAVAVATDENISDDAILRALAGFQGTGRRFDFLGEYALENVNGKTGS 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIA 413
             +  DY H    ++  +K  R   + +  +V      R    R +    A  L+  D+ 
Sbjct: 350 AMLVDDYGHHPTEVDATIKAARAGWANKR-LVMIFQPHRYTRTRDLYDDFANVLSQVDVL 408

Query: 414 IVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVA 465
           I+ D  P  E P        +   I   G    I   + IEA+  +  ++L   D+++V 
Sbjct: 409 IMLDVYPAGEAPIPGADSRSLCRTIRARGKLDPILVSD-IEAVPESLAQILEGDDLVLVQ 467

Query: 466 GKGH----------ETVHIVTNGEKKM 482
           G G+          + +  V  GE+  
Sbjct: 468 GAGNVGRVARKLADQKLQPVKKGEEHH 494


>gi|260752700|ref|YP_003225593.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552063|gb|ACV75009.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 441

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 124/412 (30%), Gaps = 83/412 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           G  A VVS    +        +     PI+   +   F    A   + +H      + +T
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQ--AHGFWERHGRCCPVVGIT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +  I + +GL +   G        A                        
Sbjct: 129 GTNGKSTTTALIHHILKEAGLPTLMGGNIGLPLLAADPLPDG------------------ 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +E SS+ +D      +       TN+  DH+D H   + Y  AK RLF       
Sbjct: 171 -GVYVLELSSYQIDL--TFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPH 227

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I   D                             + K  A H       ++  +D  
Sbjct: 228 YAVIATDDIPSQV------------------------IAKQSAAHLVAVHADNISAEDQV 263

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G     N ++A  +   +GI   ++ + L     +P R + +G       I   
Sbjct: 264 NWPNLQGPHNAQNTVLAMAVAHILGISDDVISKALISYAGLPHRMQKIGERRGVLFIDDS 323

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--------RPIMGKIALDLADIA 413
            A  + +    L     I    I+       D D  K           +G+   D A   
Sbjct: 324 KATNAMATAPALAAFPAIHW--ILGGVPKTADLDPCKAFYNHIRQAYTIGQAGPDYA--- 378

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                        ++  E   G+   +E G   +A+R A E     +V+++ 
Sbjct: 379 -------------QLLRE--AGV-NVVECGTLEKAVRLAAEEAQPDEVVMLT 414


>gi|70732383|ref|YP_262139.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf-5]
 gi|109892722|sp|Q4K6J4|MURC_PSEF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68346682|gb|AAY94288.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 484

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 139/433 (32%), Gaps = 61/433 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A    A+ +VVSSA +  +          I VV    + L+      +G    
Sbjct: 67  GHR-AENAAN--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLAELMRYRHG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  +    G   +F IG    +++   + +L T   +      
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADE 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       ++ +    TN+  DH+  +             F
Sbjct: 175 SDASFLH--------------------LQPLVAVVTNIDADHMATYDGDFNKLKKTFVDF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++ +             +     +             + 
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRPTV-TYGFSEEADVRAINVRQQGMQTFFTVLR 273

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--- 351
            + +  D    +PG   V N+L    +    GI    +++ L     V  RF+  G    
Sbjct: 274 RDREPLDVSVNMPGNHNVLNSLATICIATDEGISDEAIVQGLSGFQGVGRRFQVYGELPV 333

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDL 409
                 +  DY H    +  ++K +R     R +V+        R +       ++  D 
Sbjct: 334 EGGNVMLVDDYGHHPTEVAAVIKAVRGGWPERRLVMVYQPHRFSRTRDLYDDFVQVLAD- 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML------ 456
           A++ ++ +  P  E+P       I G        +  +        I   +++       
Sbjct: 393 ANVLLLMEVYPAGEEP-------IPGADSRQLCHSIRQRGQLDPIYIERGVDLAPLVKPL 445

Query: 457 -NKQDVLVVAGKG 468
               D+L+  G G
Sbjct: 446 LRAGDILLCQGAG 458


>gi|312874551|ref|ZP_07734576.1| bifunctional protein FolC [Lactobacillus iners LEAF 2053A-b]
 gi|311089942|gb|EFQ48361.1| bifunctional protein FolC [Lactobacillus iners LEAF 2053A-b]
          Length = 420

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I  +  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIINLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ + + P  I A+  +     ++  N   A++ A +     D++VV G
Sbjct: 362 DHLQRKLPVAILAQ--NFNNHVVQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|229123997|ref|ZP_04253189.1| Folyl-polyglutamate synthetase [Bacillus cereus 95/8201]
 gi|228659299|gb|EEL14947.1| Folyl-polyglutamate synthetase [Bacillus cereus 95/8201]
          Length = 433

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 109/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KIVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENRAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMIGENDVFIITG 417


>gi|167630126|ref|YP_001680625.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167592866|gb|ABZ84614.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 465

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 93/282 (32%), Gaps = 18/282 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V  E SS  L+    D     A    N+  DH+D H   + Y  A           E  
Sbjct: 161 WVVAEVSSFQLET--TDQFHPRASLILNITPDHLDRHGDMENYR-AIKARIFRNQGSEDI 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++  DD   + +     +       +       ++          +  ++V   D    
Sbjct: 218 TVLNYDDPLVRTLAADCRSRVLFFSRLQKMEHGAYVDGGMIRFAGPEGDMAVAAVD---R 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V NAL A  L + +GI  A+V + +     V  R E VGT      +     
Sbjct: 275 LQIKGAHNVENALAACALTVGLGIAPAVVAQAMIDFQPVEHRMEPVGTVEGVAYVNDSKG 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++    +++       R +++   G ++       + +I        ++       +
Sbjct: 335 TNPDASIKAIESYD-----RPVILIAGGKNKGSDF-SELAEIIKKRVKAVVLV-----GQ 383

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
               + A +       I+  +  +A +  A +M    DV+++
Sbjct: 384 AAPVLEAALRKAGVEAIKLVDTFDATVLEAAQMAEPGDVVLL 425


>gi|30264525|ref|NP_846902.1| folylpolyglutamate synthase [Bacillus anthracis str. Ames]
 gi|47529988|ref|YP_021337.1| folylpolyglutamate synthase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187349|ref|YP_030601.1| folylpolyglutamate synthase [Bacillus anthracis str. Sterne]
 gi|49478641|ref|YP_038507.1| folylpolyglutamate synthase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65321826|ref|ZP_00394785.1| COG0285: Folylpolyglutamate synthase [Bacillus anthracis str.
           A2012]
 gi|165871994|ref|ZP_02216635.1| FolC bifunctional protein [Bacillus anthracis str. A0488]
 gi|167636210|ref|ZP_02394514.1| FolC bifunctional protein [Bacillus anthracis str. A0442]
 gi|167640710|ref|ZP_02398970.1| FolC bifunctional protein [Bacillus anthracis str. A0193]
 gi|170688681|ref|ZP_02879886.1| FolC bifunctional protein [Bacillus anthracis str. A0465]
 gi|170708331|ref|ZP_02898775.1| FolC bifunctional protein [Bacillus anthracis str. A0389]
 gi|177653963|ref|ZP_02936004.1| FolC bifunctional protein [Bacillus anthracis str. A0174]
 gi|190567076|ref|ZP_03019992.1| FolC bifunctional protein [Bacillus anthracis Tsiankovskii-I]
 gi|227817237|ref|YP_002817246.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Bacillus anthracis str. CDC 684]
 gi|228917095|ref|ZP_04080653.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929503|ref|ZP_04092523.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228948171|ref|ZP_04110455.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229603858|ref|YP_002868741.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus anthracis str. A0248]
 gi|254687053|ref|ZP_05150911.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254724615|ref|ZP_05186398.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Bacillus anthracis str. A1055]
 gi|254736561|ref|ZP_05194267.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254741599|ref|ZP_05199286.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Bacillus anthracis str. Kruger B]
 gi|254754803|ref|ZP_05206838.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Bacillus anthracis str. Vollum]
 gi|254757635|ref|ZP_05209662.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Bacillus anthracis str. Australia 94]
 gi|30259183|gb|AAP28388.1| bifunctional protein FolC [Bacillus anthracis str. Ames]
 gi|47505136|gb|AAT33812.1| FolC bifunctional protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181276|gb|AAT56652.1| folylpolyglutamate synthase [Bacillus anthracis str. Sterne]
 gi|49330197|gb|AAT60843.1| folylpolyglutamate synthase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164712284|gb|EDR17820.1| FolC bifunctional protein [Bacillus anthracis str. A0488]
 gi|167511282|gb|EDR86668.1| FolC bifunctional protein [Bacillus anthracis str. A0193]
 gi|167528431|gb|EDR91199.1| FolC bifunctional protein [Bacillus anthracis str. A0442]
 gi|170126706|gb|EDS95589.1| FolC bifunctional protein [Bacillus anthracis str. A0389]
 gi|170667367|gb|EDT18125.1| FolC bifunctional protein [Bacillus anthracis str. A0465]
 gi|172081018|gb|EDT66096.1| FolC bifunctional protein [Bacillus anthracis str. A0174]
 gi|190562067|gb|EDV16036.1| FolC bifunctional protein [Bacillus anthracis Tsiankovskii-I]
 gi|227007558|gb|ACP17301.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Bacillus anthracis str. CDC 684]
 gi|228811529|gb|EEM57866.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830183|gb|EEM75800.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842513|gb|EEM87603.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268266|gb|ACQ49903.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus anthracis str. A0248]
          Length = 433

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 109/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENRAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMIGENDVFIITG 417


>gi|255326230|ref|ZP_05367316.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
 gi|255296684|gb|EET76015.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
          Length = 495

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 140/411 (34%), Gaps = 41/411 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S+A   +D    + +    L V +  + L+             ++AV GT GKS+ +
Sbjct: 87  VVISTAI-REDNPELVAARAQGLRVLHRSEALAAVMGE------SQVVAVAGTHGKSTTS 139

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +  +  + G   SF +G                P  I++A+A     S      ++  
Sbjct: 140 SMISVMFDQLGAQPSFAVGTVIAGRGTNAHLGAQGPETIFVAEADESDGSFVRYCPAIAV 199

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  DH+D+++T +  F A  R    L P         D
Sbjct: 200 -------------------VTNVEPDHLDFYETDERVFEAFNRFVGSLAPNGVVVTCADD 240

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK--------QQVTISVEGKDFD 301
              +    +        V         + + ++ +  +          +        + D
Sbjct: 241 AGAADLAARSRAAGVPVVTYGEAADADLRISEITSAGSSSSSHLSWSFECRGVRYEGEQD 300

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     NA  A    +  G ++A +   L        RF   G    G +++ D
Sbjct: 301 LALKVPGIHNQLNASAAFASALISGYEAADIARALADFVGADRRFTLRG-EVAGVKVFDD 359

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAH    +   L+  RT+  G  + V        R +       + AL ++D A V D  
Sbjct: 360 YAHHPTEVFRALQTGRTVADGHNLYVIFQPHLFSRTREFAKEFAQ-ALSMSDRAHVLDIY 418

Query: 420 PRSEDP-EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P  E P E + +E+I G     +       AI   +      D+++  G G
Sbjct: 419 PARELPIEGVTSELITGAGFSEVRYATAESAIEDIVACAQDGDIVMTVGAG 469


>gi|293192329|ref|ZP_06609440.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
 gi|292820244|gb|EFF79238.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces odontolyticus
           F0309]
          Length = 463

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/270 (21%), Positives = 97/270 (35%), Gaps = 12/270 (4%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D + +++ +       F   +      +  A+D  +  + + A   G RV
Sbjct: 179 IVTNVEPDHLDRYHSREEFEG-IFVEFARRMVPGGLLVTCAEDEGAVRLAQSARAEGLRV 237

Query: 268 LSVGY-----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           ++ G          + +  V         +++           +PGE  V NA  A    
Sbjct: 238 VTYGRRERSLCTPDVVIADVRVEAQGAGASLTWGELSASLALSVPGEHNVLNAAAAWVAG 297

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-S 381
           I  G+    + + L +      RFE  G      R++ DYAH    +E  ++    +   
Sbjct: 298 IECGLSPQAIADGLGEFTGAARRFEARGQ-VGSRRLFDDYAHHPTEVEAAIREAHVVAGE 356

Query: 382 GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPG 438
           G + VVF      R +       + AL  AD  ++       EDPE       I   I G
Sbjct: 357 GDVTVVFQPHLYSRTRIFAERFAQ-ALSGADHVVLAGIYGAREDPEPGVDSSLISSRIEG 415

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +  EA R A  +  +  V +  G G
Sbjct: 416 AFYVEDMHEAARLAASLTPEGGVCLTMGAG 445


>gi|167614190|gb|ABZ89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 438

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 115/347 (33%), Gaps = 45/347 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GKS+VA+ V+ I ++SG   +  G                   + + +  + L
Sbjct: 109 ISITGTNGKSTVATIVKNIAKKSGYKVYLGGNIGFP-------------ALDMLEKKADL 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS  L+   +  +K       N+  DH+D +               + 
Sbjct: 156 -------YILELSSFQLE--NIFSLKSKLSVVLNINEDHLDRYPDG-----------FQQ 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   +I    +     + ++ +    +       G       V +I +K  +    + 
Sbjct: 196 YKKIKLSIYKNSEICLINLREKKYCFKNKHKKYITFGTNDSDYYVSSIKDKIFLYYKQKK 255

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   +       NALV+  +  A+      V         +P RF+ V  ++    
Sbjct: 256 IFDMSKTSIHEHQNYENALVSLAISDAMNFPRDKVKYVFSNFKSLPHRFQIVHKHNDISW 315

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I    +   NS ++ L NI T    +  +    GGD+      I+      L        
Sbjct: 316 INDSKSTNINSTKIALSNINT----KGTIWLLLGGDKKSANFQILKNDLEKLKVKIYCFG 371

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +    +  KI           I   N  +A+    + +   D++++
Sbjct: 372 KD--GMNIAKIFQ------KKSIYIENLKDAMILISKEVMSGDIVLL 410


>gi|94264522|ref|ZP_01288309.1| Folylpolyglutamate synthetase [delta proteobacterium MLMS-1]
 gi|93455081|gb|EAT05308.1| Folylpolyglutamate synthetase [delta proteobacterium MLMS-1]
          Length = 438

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 342 VPGRFEF--VGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD-QG 397
            PGR E   +G  +   R+ +D AH    +  ++  ++   +  R++VV+    D+D   
Sbjct: 294 WPGRLELLKMGPPADERRVLLDGAHNPAGVAELVAALQGDFSYRRLVVVWAGMADKDLAA 353

Query: 398 KRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEM 455
              +M  IA     + I T  D  RS   E++R  +        +     +EA+  A   
Sbjct: 354 GLALMAPIAS----VFIFTRPDAERSATAEELRELLPPEQRRQALVAAGVVEALELACRQ 409

Query: 456 LNKQDVLVVAG 466
               D++VVAG
Sbjct: 410 SEADDLVVVAG 420


>gi|325829942|ref|ZP_08163400.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
 gi|325488109|gb|EGC90546.1| UDP-N-acetylmuramate--L-alanine ligase [Eggerthella sp. HGA1]
          Length = 475

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 125/414 (30%), Gaps = 37/414 (8%)

Query: 76  AYSLQDFSATIRSNTPILVV------DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
              +    A I    P++VV      +N     +  A  L   H   +LA  G       
Sbjct: 53  EVHIGHDPANIPEGNPVIVVSTAILDNNPELAAAK-ARGLTIWHRAQMLAYLG------R 105

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           A     +    G ++      S +    +D        +      ++  +     V  + 
Sbjct: 106 ALQTLAVAGTHGKTTTSSMLASVLDGMGEDPTFLIGGIVRAYGTNAHSGTGAHYVVEADE 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S           +   A   TN+  DH+D+++     +         +       +   +
Sbjct: 166 SDKSF-----MHLSPRAVLVTNIEADHLDHYRDLDEIYEKFASFIGSVPDDGGVVVACGE 220

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     V   +                I   +   + +   + +         +   PG 
Sbjct: 221 DEALVRVACASGKRLFTYGFSDACDVRIASYEPNGVGSDFTLELPDGSVVSAHVKQNPGR 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NA    GL  A+G D A   E L     V  RF+ VG  + G  +  DYAH    +
Sbjct: 281 HNVLNAAGVVGLLWALGYDPAQAAEALADFAGVKRRFDLVG-EAGGVTVVDDYAHHPTEI 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-------ALDLADIAIVTDDNPRS 422
              ++    +    + V+F         + P+  ++       A D AD     D  P  
Sbjct: 340 AATIEAASHLGFAHVHVLFQPHR---YSRAPLFTEVLKDDFGRAFDAADAVTFMDVYPAG 396

Query: 423 EDP------EKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E P      +     ++   G P       RIE +      L + D+L+  G G
Sbjct: 397 EAPVPGVSGKTFLNVVLDHAGHPEAAYVPRRIEVVPYLAGKLGEGDLLITMGAG 450


>gi|227485010|ref|ZP_03915326.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237007|gb|EEI87022.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 468

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 83/278 (29%), Gaps = 11/278 (3%)

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             +           N+  DH+DY++      N                +   ++     +
Sbjct: 173 GNIRYYFPQTVIILNIDEDHLDYYKDLNDIVNTFKEYLRNQDENSKTILNLNEENNKLIL 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                +             +        +       +   G    F   + G   + NA+
Sbjct: 233 DAVQGDLITYGQENPDADYYATNINFDEVGRPSFDLMMKNGDVEHFKLGVIGRHNINNAM 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            +       GID   + E++ K   +  R + +G       I  DY H  + + + L  +
Sbjct: 293 ASIIATYENGIDINTIRENILKYTGLDRRMQIIGH-VNKTTIMTDYGHHPSEILVTLDAL 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE--DP----EKI 428
           +  T GR+I V+       + K  +          AD  IVTD     E  DP    + +
Sbjct: 352 KEHTKGRLICVW-QPHTYSRTKT-LFNDFLNSFNSADEIIVTDIYAAREKFDPTIHSKDV 409

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              ++             EA      ++   D+++  G
Sbjct: 410 VDAMVKKGLNAKYISTFEEARDYIYTIIKDDDLVITTG 447


>gi|227503281|ref|ZP_03933330.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
 gi|227075784|gb|EEI13747.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
          Length = 487

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 136/426 (31%), Gaps = 58/426 (13%)

Query: 71  IVVSSAYSLQDFSATIR---SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           +V S A   QD    +    +N P++   +    L               + + GT GK+
Sbjct: 76  VVTSFAAIPQDNPELVAARGNNIPLIRRSDLLAALME---------GHTQVLLAGTHGKT 126

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S  S      Q +GL          ++    +    T          S  S    +    
Sbjct: 127 STTSMAVSAMQHAGLD-PSFAIGGQLNRAGTNAHGGTGEAFVAEADESDASLLRYS---- 181

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN   DH+DY  +  AYF       + + P     ++ 
Sbjct: 182 ----------------PDIAVITNAEPDHLDYFHSADAYFKVFADFADLVTPDTGYLVVC 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL------------KKVCAIHNKQQVTISV 295
           A+D ++ E+ ++A + G  V+  G   K                     +    Q+++  
Sbjct: 226 AEDEHAAEIGEQALSRGINVIGYGGAEKARTTSVPLAATLTAEETTAAGMACTVQLSLPG 285

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             +   +   +PG   V N++ A    +  G + + + E L     V  RFE+ G+    
Sbjct: 286 VEQSVSYQLQIPGHHMVLNSMAALIAGVLSGGEPSTIAEGLADFSGVRRRFEYRGSVDWQ 345

Query: 356 ---GRIYVDYAHTSNSLEMILKNIR-----TITSGRIIVVFG-CGGDRDQGKRPIMGKIA 406
               R++ DYAH    +  +L+  R         GR+I  F      R         +  
Sbjct: 346 GGSVRVFDDYAHHPTEVAAVLRAARAKVAAEGNGGRVIACFQPHLYSRTMEFDAEFAQAL 405

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRTAIEMLNKQDVL 462
                  ++     R +  E I + II          I + +   A +  + +    D++
Sbjct: 406 ALADAAVVLDIYGAREQPVEGITSRIITNKMPEEMEVIFEPDFSAAAKDVVSIAQPGDII 465

Query: 463 VVAGKG 468
           +  G G
Sbjct: 466 LTIGAG 471


>gi|311069478|ref|YP_003974401.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus atrophaeus 1942]
 gi|310869995|gb|ADP33470.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus atrophaeus 1942]
          Length = 432

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 120/413 (29%), Gaps = 55/413 (13%)

Query: 59  FIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           F    I  G   I  ++   +  +    +    P++      KFL  +  +         
Sbjct: 53  FSADNIKAGMTVIAGNAFPDTHPEIEKALSEGIPVIR---YHKFLGDYMKKYIS------ 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG  GK+S    +  + Q++  +SF IG  + + +   +            +   + 
Sbjct: 104 VAVTGAHGKTSTTGLLAHVMQQAKPTSFLIGDGTGMGNENSEY-----FVFEACEYRRHF 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S    +  +                      TN+  DH DY       F+A        
Sbjct: 159 LSYQPDYAIM----------------------TNIDFDHPDYFSNIDDVFDAFQ---NMA 193

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L      I   DD Y   + K   N        G +  F     V               
Sbjct: 194 LQVNKGIIACGDDEY---LPKIHANVPVVYYGTGEENDFQARNIVKNTEGTTFDVFVRNT 250

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F  P  G   V N+L    LC    ID  ++   L+    V  RF           
Sbjct: 251 FYDTFYIPAYGHHNVLNSLAVIALCHYEEIDVNIIKLALQSFGGVKRRFNEKILG--DQV 308

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIV 415
           +  DYAH    +++ ++  R     R IV         R Q       +     AD   +
Sbjct: 309 LIDDYAHHPTEIKVTIEAARQKFPEREIVAVFQPHTFTRTQSFLDEFAESLSA-ADCVYL 367

Query: 416 TDD-NPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEML-----NKQDV 461
            D      E+  K+  A++   I           ++  A +          D+
Sbjct: 368 CDIFGSARENIGKLTIADLQEKIDNAKLIDENDTSVLKAHDQAVLIFMGAGDI 420


>gi|241762283|ref|ZP_04760364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373186|gb|EER62816.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 441

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 125/412 (30%), Gaps = 83/412 (20%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENI--LAVT 121
           G  A VVS    +        +     PI+   +   F    A   + +H      + +T
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQ--AHGFWERHGRRCPVVGIT 128

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +  I + +GL +   G        A                        
Sbjct: 129 GTNGKSTTTALIHHILKEAGLPTLMGGNIGLPLLAADPLPDG------------------ 170

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +E SS+ +D      +       TN+  DH+D H   + Y  AK RLF       
Sbjct: 171 -GVYVLELSSYQIDL--TFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPH 227

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I   D                             + K  A H       ++  +D  
Sbjct: 228 YAVIATDDIPSQV------------------------IAKQSAAHLVTVHADNISAEDQI 263

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G     NA++A  +   +GI   ++ + L     +P R + +G       I   
Sbjct: 264 NWPNLQGPHNAQNAVLAMAVAHILGISDDVISKALVSYAGLPHRMQKIGERRGVLFIDDS 323

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--------RPIMGKIALDLADIA 413
            A  + +    L     I    I+       D D  K           +G+   D A   
Sbjct: 324 KATNAMATAPALAAFPAIHW--ILGGVPKTADLDPCKAFYNHIRQAYTIGQAGPDYA--- 378

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                        ++  E   G+   +E G   +A+R A E     +V+++ 
Sbjct: 379 -------------QLLRE--AGV-NVVECGTLEKAVRLAAEEAQPDEVVMLT 414


>gi|332162416|ref|YP_004298993.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606501|emb|CBY27999.1| dihydrofolate synthase; Folylpolyglutamate synthase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666646|gb|ADZ43290.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863728|emb|CBX73829.1| bifunctional protein folC [Yersinia enterocolitica W22703]
          Length = 422

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEH 335
             +     +  Q          D          V  A  A  L +           V+  
Sbjct: 226 AWQFSQHGSFDQPQNGWNWLCGDRQLNDLPLPNVPLANAATALAVLHYSGLSLSEDVIRQ 285

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDR 394
             +   +PGRF+     S    + +D AH  ++   +   +  +   G++  V G   D+
Sbjct: 286 GLQAASLPGRFQI---ISEQPLLILDVAHNPHAARYLTDKLAQLPKQGKVRAVVGMLSDK 342

Query: 395 DQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           D G     G +A   +  D       + PR         ++   +    +  +   A R 
Sbjct: 343 DIG-----GTLACLSEQVDKWYCAPLEGPRG----ASAEQLAEHLAQSRQFSDVETAWRQ 393

Query: 452 AIEMLNKQDVLVVAG 466
           A++    QDV++V G
Sbjct: 394 AMQDAEPQDVVIVCG 408


>gi|221632096|ref|YP_002521317.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
 gi|221157253|gb|ACM06380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
          Length = 469

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 89/278 (32%), Gaps = 12/278 (4%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+     G+       T++  DH+D + + +AY +AK  +     P +   + 
Sbjct: 170 LELSSWQLEGLDEHGLSPHIAVLTSISPDHLDRYPSFEAYIDAKRAIARHQRPGDWFVVN 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD  +                          +    I         +  +     FPL
Sbjct: 230 R-DDPVAWACRDAGCGKVVPFGRDDGVSDGAFWRDDRLIWRWGGEEQDLLRRS---DFPL 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            GE  V NAL AA   +  G   A V   L +   VP R E            VD+ + S
Sbjct: 286 MGEHAVGNALAAAAAALLRGASPAHVAAALREAEPVPHRLE-----HVARLGTVDFVNDS 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +           T     +V   GG         + +         ++  D   + D +
Sbjct: 341 AATAPAAVLAALATFRERPIVLIGGGAAKGVSLAELAEAVARQVRAVVL-LDGTATPDYQ 399

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    + G  +  +  EA+R A E+     V+++
Sbjct: 400 AALRAAGARVEGPYQ--SMEEAVRRAAELAEPGAVVLL 435


>gi|154482465|ref|ZP_02024913.1| hypothetical protein EUBVEN_00132 [Eubacterium ventriosum ATCC
           27560]
 gi|149736666|gb|EDM52552.1| hypothetical protein EUBVEN_00132 [Eubacterium ventriosum ATCC
           27560]
          Length = 462

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VV 387
               ++   +  V PGR E +        I +D AH   ++  + K +    + + I  +
Sbjct: 309 IEKNIKKGIEKTVWPGRMEVISKEPL---IIIDGAHNPGAVLELRKTLDLYFTNKRITFI 365

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
            G   D+D  K     +I  D A+  I +T +N R  D  K+   ++          +  
Sbjct: 366 MGVLSDKDFSKE---AEIIADRAERIITITPNNSRGLDGHKLAETLVKYNHNVQVADSLK 422

Query: 447 EAIRTAIEMLNKQ--DVLVVAG 466
           +A   +I+ + +   D+++  G
Sbjct: 423 QAAEESIDTIKENRADMILAFG 444


>gi|325067281|ref|ZP_08125954.1| UDP-N-acetylmuramate/alanine ligase [Actinomyces oris K20]
          Length = 242

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFG-CGGDR 394
                 RFE  G  + G R+  DYAH    +E +L+  R +     GR++V+F      R
Sbjct: 110 FGGTGRRFEDRG-EADGVRVIDDYAHHPTEIEALLRTARGVAQERGGRVLVLFQPHLFSR 168

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAE-IIHGIPG--FIEKGNRIEA 448
            +      G+ AL LAD  ++TD  P  E   D   I  + +   +PG        R+EA
Sbjct: 169 TRAFADRFGQ-ALALADAVVITDVYPARETQADFPDITGDTVAQRVPGGTARFVAERLEA 227

Query: 449 IRTAIEMLNKQDVLV 463
                ++    D+L+
Sbjct: 228 AHAVADLARPGDLLL 242


>gi|307266535|ref|ZP_07548068.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918454|gb|EFN48695.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 454

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 102/300 (34%), Gaps = 20/300 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + + +     +  E SS  L+   +   K       N+  DH++ H+T ++Y 
Sbjct: 143 IGYPLIYAVMEATEGDFIVAEISSFQLET--IKEFKPKISCIINITPDHLNRHKTFESYR 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K R+FE     E   + + DD  +  +  +A                 ++K      +
Sbjct: 201 DIKGRIFENQRGDEYTVLNF-DDPVTWSLKNKAKCRVFPFSRKSSLENGAYVKDGSIYIS 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  +   +  +   +PGE  + NAL A+ +    GI + ++   L+    V  R E
Sbjct: 260 VNGNAKKIIDIEEIY---IPGEHNLENALAASSVAYLSGISANVIANTLKTFKGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++ +      +  +V   GG     +     K   
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQAL------KTPIVLIAGGYDKGSEFDEFVKAFN 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       +  +KIR             +  G   EA++ A E   + D +++
Sbjct: 371 GKVKKLILI-----GQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|187251915|ref|YP_001876397.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
 gi|226711909|sp|B2KEW4|MURD_ELUMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|186972075|gb|ACC99060.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
          Length = 452

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 110/284 (38%), Gaps = 20/284 (7%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E SS+ L+       K  A +  N+  DHID+H + + Y +AK ++F+    K
Sbjct: 162 QHDLIVMEVSSYQLEDS--SYFKPYAATILNITPDHIDHHGSFKKYLDAKSKIFKFQTQK 219

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I  AD        K    A   + S  Y      L+++ +        +     + 
Sbjct: 220 DIAVINSAD--------KNCLKAAKNIKSKLYGFATTPLQQIRSHVFYDGDELVFSAGER 271

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                LPG   V NA+ A+ L +A G+DS  + +   K   V  R E +G       I  
Sbjct: 272 ISPPKLPGIHNVENAMAASLLALAAGVDSQSIQQAFNKFKTVEHRIELLGIKKGISFIND 331

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   +S    +  +R++  G+   +   G D+      ++  +        ++     
Sbjct: 332 SKATNIDST---IIALRSMPDGKKTWLILGGQDKGSPYGVLLP-LLETKCKKVLLV---- 383

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +   KI+ + + G   F   G   +A+  A     K+D++++
Sbjct: 384 -GQAAAKIKKD-LPGYKYFNVCGTIDKAVEYAFNNAQKEDIILL 425


>gi|328952329|ref|YP_004369663.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452653|gb|AEB08482.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 477

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 90/275 (32%), Gaps = 13/275 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+ R+H+D+++          +   ++ P  +    Y  D  +   +     
Sbjct: 172 NPHVAVVTNVDREHLDHYRDLAHIQEVFAKFIHQVQPGGAVVACY--DDPNLRPLLYGVQ 229

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +   G +                +  E K      PL G   V N+L AA + 
Sbjct: 230 GRLITYGLKSGGNYRAAHIQVTGGGSSYTLLRQEKKLGQITIPLAGWHYVANSLAAAAVG 289

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A+G+D   +   L +   +  RFE  G N +G  +  DY H    +   L  +    +G
Sbjct: 290 FALGLDFRDIQAGLAQTGRIKRRFEIKGEN-QGVTVIDDYGHHPTEIRATLDAMAQAFAG 348

Query: 383 RIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII- 433
           R +VV        R Q   P    I    A +  +TD     E          +   I  
Sbjct: 349 RRLVVAFQPHRFSRTQALLPDFFDIFQQ-AQLLFLTDIYSAGERVIHGLSGRDLYRGIRE 407

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            G       GNR E        L + DVLV  G G
Sbjct: 408 AGHTAVQYVGNREELAPELWNYLRRGDVLVTMGAG 442


>gi|289624980|ref|ZP_06457934.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647038|ref|ZP_06478381.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330868713|gb|EGH03422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 448

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 124/361 (34%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++  +          A    +    ++ + +   G+++++ G  G +      +  
Sbjct: 308 HRCQWLREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGKLVLIAGGDG-KGADFSALRA 366

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +A +    A++        D E I   +   +   +       A+  +  +  + D ++
Sbjct: 367 PVA-EHCRAAVL-----LGRDAELIAQALGDTVT-LVRVDTVQAAVEQSARLAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|187935191|ref|YP_001886692.1| folylpolyglutamate synthase [Clostridium botulinum B str. Eklund
           17B]
 gi|187723344|gb|ACD24565.1| tetrahydrofolate synthase [Clostridium botulinum B str. Eklund 17B]
          Length = 437

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 6/149 (4%)

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                   I +  ++E+  +     GR E +   ++   I +D AH    ++M+  N++ 
Sbjct: 276 ILCEREGLIFNKELIENSIESVKWKGRLEVL---NKKPLIVMDGAHNIEGIKMLKNNVKK 332

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIP 437
               +   VF   G     +   M K    +A     +T  + R+E   +++  I+    
Sbjct: 333 YF--KYNNVFLLLGILADKQVEEMIKEITPMAYKVYALTPHSDRAELNTELKDHILKYNK 390

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I   +  +A++T +     +D+++++G
Sbjct: 391 NTIALDSYEDAMKTVLSEATSEDLILISG 419


>gi|323489497|ref|ZP_08094724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
 gi|323396628|gb|EGA89447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
          Length = 454

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 113/365 (30%), Gaps = 50/365 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + +  +  +   +    G   T++S   +    
Sbjct: 104 ELAYLISEAP---FIGITGSNGKTTTTTLLFHMLNQDNKNPLIAGNIGTVASGVAE---- 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          ++    +  E SS  L     +  +      TN+   H+DYH + 
Sbjct: 157 --------------KAKPENVIVTELSSFQLK--GTEAFRPTIAIITNIYEAHLDYHGSI 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  A           E   I  AD     E  K            G   + +   +  
Sbjct: 201 EDYR-ASKMKLTSNQTAEDYFIYNADQPLLVEHAKNCKAKLVPFTLKGRTEESVSADENY 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                +++              L G+  + N L A    +  G     ++  L     V 
Sbjct: 260 VYWQGEEL-------IERSKIMLAGQHNLENILAATAATLIQGGTKETIIRVLTSFTGVK 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRP 400
            R +F+             A  + + +  L+          I++   G +R+      RP
Sbjct: 313 HRSQFIKEWQGRKFYNDSKATNALATKSALEAFPE-----NIILLAGGLERNHSLDEIRP 367

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M ++        +VT      E  ++        G+   I+ G   +A+  AI+     
Sbjct: 368 FMDRV------KVLVT----FGETAQRFTTFAEESGVKTIIQAGKMDDAVEKAIQASADG 417

Query: 460 DVLVV 464
           D +++
Sbjct: 418 DTILL 422


>gi|307721054|ref|YP_003892194.1| hypothetical protein Saut_1134 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979147|gb|ADN09182.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 337

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 19/108 (17%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++ +     ELIN   +          N +  D++ ++ G +F+A      D    I
Sbjct: 1   MRLENTLALTHGELINTPFVNS-------FNNIVFDAKAVRRGDLFIA-----FDEST-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
             AI  GA  +V      + D      S    + V +    L      
Sbjct: 48  KDAIFNGAYGVVFDKPTQITD------SEIAWIKVKDLEDTLKRLLRF 89


>gi|261749339|ref|YP_003257024.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497431|gb|ACX83881.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 467

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 33/352 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+++TG++GK++ +  V +I Q+ G      G                        
Sbjct: 106 KNSYIISITGSNGKTTTSYIVYKILQKEGFHVEIAGNIGRS------------------- 146

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S    +      +E SS  LD       +       N+ RDH+D +      + +   
Sbjct: 147 -FSREVLKKKDVYVLEVSSFQLDD--CYNFRSNIAVLLNITRDHLDRYHNDIESYISSKF 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                  KE   I   DD   ++  K+       +     +   +           +   
Sbjct: 204 RISTQQNKEDIFIYNHDDPLIRKGFKKYPILSNCIPFSIQEELCVGAYLKENKIFFRNKF 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                       PL G+  +YN L +  + + + +    ++  +  L  +  R E V   
Sbjct: 264 NQERCLLHVDKIPLKGDHNLYNILASVLVSVTLNVRKTSMIHPILGLKSIEHRMEKVLNI 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +    I    A   N++   LK+++        +    G D+    R I+  +   +  I
Sbjct: 324 NGVQFINDSKATNVNAVFYALKSMKA-----PTIWIAGGKDKGNDYREILPLVKEKVKAI 378

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  +N +     +   +I        E  +  +A+R A  +    D +++
Sbjct: 379 IFLGKNNKKFISFFQDVIDI------IFETNSLKKAVRMAYILSIHGDNILL 424


>gi|218258175|ref|ZP_03474577.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225698|gb|EEC98348.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
          Length = 453

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 107/361 (29%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I +++G+     G               
Sbjct: 103 EFAGRYTD---AKMICITGSNGKTTTTMLTYHILRQAGVDVGLAGNVGN----------- 148

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  LD   +   K       N+  DH+D +  +
Sbjct: 149 ---SLALQV-----AEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDHLDRYNYE 198

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +    E   I + DD      + + H                 +K   
Sbjct: 199 MQNYVDAKFRILQNQTAEDAFIFWNDDPIIAREIAKRHPEATLYPFAETHEAG--VKGYT 256

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                +  T +        L  L G   +YN+L +      + I    +   L     V 
Sbjct: 257 EDKKIRIETSNGTFTMEQDLLALSGTHNLYNSLASGIASKLVDIHDENLRASLSDFTGVE 316

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++         +V   GG         + 
Sbjct: 317 HRLEKVARVRGVDYINDSKATNVNSCWYALQSMT------TPLVLILGGTDKGNDYSEIE 370

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        I         D  K+ A     +P   +  +  EA+  A ++  K D ++
Sbjct: 371 ELVKKKVHALIF-----LGVDNTKLHAFFDGKVPVIEDARSMEEAVSKAYKLAEKGDTVL 425

Query: 464 V 464
           +
Sbjct: 426 L 426


>gi|27262262|gb|AAN87412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Heliobacillus
           mobilis]
          Length = 199

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 14/157 (8%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL A    I +GID A+          V  R E VG  +    I        ++ 
Sbjct: 25  HNVENALAALAGTIGLGIDPAVAARAARNFQPVEHRMEPVGMVNGVEYINDSKGTNPDAS 84

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +++       + IV+   G ++    R  +  +  +     ++            I 
Sbjct: 85  IKAIESYD-----KPIVLIAGGKNKGSDFR-ELASLIKERVKAVVLVGQ------AAPIL 132

Query: 430 AEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E +   G   F       E +  A ++    DV+++
Sbjct: 133 EEALRSSGYDQFTRVQTFAETVAEASKLAQPGDVVLL 169


>gi|88707115|ref|ZP_01104809.1| cyanphycin synthetase [Congregibacter litoralis KT71]
 gi|88698627|gb|EAQ95752.1| cyanphycin synthetase [Congregibacter litoralis KT71]
          Length = 544

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 12/127 (9%)

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR-DQGKRPIMGKIALDLADIA 413
           G    VD+AH    LE ++  +  + + R  ++ G  GDR D+  R      A    D  
Sbjct: 400 GATFLVDFAHNPAGLEALMPMVEGLPARRRALITGQAGDRGDEDIRAFADASAALHFDRI 459

Query: 414 IVT--DDNPRSE---DPEKIRAE--IIHGIPGFIEKGNRIE--AIRTAIEMLNKQDVLVV 464
            +   D + R     +  +I  +  I  G        ++ E  A R A+      D++V+
Sbjct: 460 WLKRMDGHARGRAEGEVARIMRDAFIEQGHSAKSISLSKTELDATRAALRWAKPGDLVVL 519

Query: 465 AGKGHET 471
               HE 
Sbjct: 520 LS--HEK 524


>gi|251772200|gb|EES52770.1| UDP-N-acetylmuramate--alanine ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 471

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 135/409 (33%), Gaps = 45/409 (11%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVSSA   S  ++ A +    PI+     R  +   AS +    P   +AVTG+ GK++
Sbjct: 70  VVVSSAIRHSNPEWIAAVTRGIPIVH----RGEM--LASLVN---PSYGIAVTGSHGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S V  +   +GL                      P+ +   +  S+     V      
Sbjct: 121 TTSMVASLLVSAGLD---------------------PTCVVGGRVSSFPGCALVGRSRYF 159

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +           +       TN+ R+H+D++ T      A    + +   +    I+  
Sbjct: 160 VTEADESDGSFMKLAPRLRIVTNIDREHMDFYGTFDNLIQA-FSTYLDTGDEGGIGILCI 218

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD     +++R                         + +   V +        F   +PG
Sbjct: 219 DDPGVAALIERISTIPLTYGLSSAARVRAENIVHEGVGSSFDVRVDGAC-WGRFSLHVPG 277

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A    I + I   L+ + L +   V  RF  +G    G  +  DY H    
Sbjct: 278 MHNILNALAAICAGICLEISPDLMRQALSRFESVGRRFTLLG-ERDGVIVVDDYGHHPTE 336

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP- 425
           +   L   R    GR I V      R    R +          AD  +VT+     EDP 
Sbjct: 337 IRATLAAARLAYPGRRI-VAVFQPHRFTRVRDLQNAFIESFSDADKILVTEIYSAGEDPI 395

Query: 426 -----EKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                E +  ++       ++   R +  +     ML   D+L+  G G
Sbjct: 396 PGIGSEGLYRKMRDRWDDRVDYEPRRDRWVERLNGMLKPGDLLLTLGAG 444


>gi|168482914|ref|ZP_02707866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043724|gb|EDT51770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
          Length = 450

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 120/389 (30%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALAKGIPVL----TEVELAYLISE------ALIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH     Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|34497973|ref|NP_902188.1| folylpolyglutamate synthase/dihydrofolate synthase [Chromobacterium
           violaceum ATCC 12472]
 gi|34332810|gb|AAQ60189.2| folylpolyglutamate synthase/dihydrofolate synthase [Chromobacterium
           violaceum ATCC 12472]
          Length = 421

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/392 (13%), Positives = 119/392 (30%), Gaps = 32/392 (8%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V+  R  + L       K    ++ V GT+GK S  + +  I + +G           +
Sbjct: 27  RVERVRGAMGL-------KPACPVIMVAGTNGKGSTCAMLSSIFRAAGFKVGAYTSPHIL 79

Query: 154 SSFAQ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               +          +  + +   I  A       +           S   ++  +  ++
Sbjct: 80  RYNERIAIDLKPASDERIIASFEAID-AARGDTTLTYFEFGTLAAVHSFVAEKVDVIILE 138

Query: 204 LI---AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           +         N+    +    +      A +    E +  E   +  A         +  
Sbjct: 139 VGLGGRLDAVNIFEPDVSVVVSVDLDHQAILGDNREDIGFEKAGVYRAGKPAICVDPEPP 198

Query: 261 HNAGCRVLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                   ++G     +        + N+         +    +  L G +Q+ NA  A 
Sbjct: 199 QRLLDHAAAIGADLKLYGRDFGYTRMDNQWSFRCGDHARHALPIPALRGAYQMINACGAL 258

Query: 320 GLCIAIGIDSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            +  AI     + +  +++       PGRF+ +        + +D  H  ++++ +   +
Sbjct: 259 AVLDAIRDKLPVGIGAIKQGLVEVEWPGRFQVLPGRPA---VVLDVGHNPHAVKAMAAAL 315

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-H 434
           + +        VF    D+D      + K   +     +   D PR +  E I + +   
Sbjct: 316 KQLPFAENRYAVFSMLADKDMMAVVELAK--GEFDHWLVAGLDMPRGQSGEAIASALKNA 373

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           GI          +A   A+      D +VV G
Sbjct: 374 GIASVSAFDTVAQAWSAALSRAGDNDRIVVFG 405


>gi|320011285|gb|ADW06135.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 493

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 126/406 (31%), Gaps = 47/406 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V +  +          +   + V  +        A RL G      LAVTGT+GK++ 
Sbjct: 94  LVVTAPGWKPDKPLFLAAAEAGVPVWGDV-----ELAWRLRGPDAAPWLAVTGTNGKTTT 148

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G                     ++   + L  +    ++VE 
Sbjct: 149 VRMLASILEAAGLRTAAVGNIG------------------VSLLDAVLGDETYDVLAVEL 190

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  +G+  NL  DH+D+H +   Y   K R++E            A 
Sbjct: 191 SSYQLHW--APSLRAHSGAVLNLAPDHLDWHGSMAGYAADKGRIYEGNSVACVYNAQDAA 248

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFI---HLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                              ++G  G          +             +          
Sbjct: 249 TEDLVREADVEEGCRAIGFTLGTPGPSQLGLVDGILVDRAFVADRQKQAQELAEVGDVDP 308

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           P    + NAL AA L  A G+  A V + L        R E V   +    I    A  +
Sbjct: 309 PAPHNIANALAAAALARAFGVPPAAVRDGLRAFRPDAHRIEHVADVAGVTYIDDSKATNT 368

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++ E  L           IV    G  +      ++   A  L  + ++        D  
Sbjct: 369 HAAEASLAAYEP------IVWIAGGLAKGATFDGLVTGAAKRLRGVVLM------GADRA 416

Query: 427 KIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
            I+  +    P       +R +      A+  A  +    D +++A
Sbjct: 417 LIKEALTRHAPEVPVVDLDRTDTGAMPAAVLEAARLARPGDTVLLA 462


>gi|111018100|ref|YP_701072.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
 gi|123145349|sp|Q0SHS2|MURC_RHOSR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110817630|gb|ABG92914.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus jostii RHA1]
          Length = 503

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 142/457 (31%), Gaps = 79/457 (17%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G   +V + A   +D    + +     P+++        ++ AS +
Sbjct: 59  GHD--AGALDLLPGGPTVVVTTHAAIPKDNPELVEAARRGIPVILRP------AVLASLM 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G      L V+GT GK+S  S +    Q  G           ++    +    +     
Sbjct: 111 QGH---RTLLVSGTHGKTSTTSMLVVALQHCGFD-PSFAVGGELNEAGTNAHHGSGDVFV 166

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S                       L   +      TN+  DH+DY  + +AY   
Sbjct: 167 AEADESD--------------------GSLLQYEPDVVVVTNVEADHLDYFGSTEAYIQV 206

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL---------- 279
               F   L      +   DD  S  + +R    G   + V   G               
Sbjct: 207 -FDDFAARLSPGGLLVACLDDPGSAALAQRVAARGLPGVRVLGYGSAEDADGAFASVDGV 265

Query: 280 --------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                    +   +    Q  ++ E         +PG     NAL A       G D   
Sbjct: 266 EVGARLLSFEARDVGGVLQFQLAGEQSPRTVRMGVPGRHMALNALAALLAAREAGADVDE 325

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---------- 381
           +LE +     V  RF+F G    G R++ DYAH    +  +L     +            
Sbjct: 326 ILEGIAGFGGVHRRFQFTGREH-GVRVFDDYAHHPTEVRAVLGAAADLVRQPHEADRRES 384

Query: 382 ------GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                 G++IVVF      R        G  ALDLAD  +V D     E+P    +  + 
Sbjct: 385 EDSVRSGKVIVVFQPHLYSRTATFAEEFGH-ALDLADEVVVLDVYGAREEPLPGVSGALV 443

Query: 435 GI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +        + +  +A R    + +  DV++  G G
Sbjct: 444 ALSVSKPVHYQPDLSQAPRQVAALASPGDVVITMGAG 480


>gi|87199156|ref|YP_496413.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|109892716|sp|Q2G994|MURC_NOVAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|87134837|gb|ABD25579.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 474

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 132/412 (32%), Gaps = 54/412 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
                +  A + +  P++        L            ++ +AV GT GK++  S V  
Sbjct: 78  KRDNPEVVAALENRIPVVRRAEMLAELMRL---------KSTVAVAGTHGKTTTTSMVAC 128

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +    G+    I     I+S+  + RL                      + VEA      
Sbjct: 129 LLDAGGIDPTVI-NGGIINSYGSNARLGDSD-----------------WMVVEADESDGS 170

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             RLDG        TN+  +H+D++ + +   +A +   E +    +  +          
Sbjct: 171 FLRLDGTL---AVVTNIDPEHLDHYGSFERVKSAFVEFIENVPFYGAAMLCIDHPEVQAI 227

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQ 311
           + K                            N+    +      F        P+PG   
Sbjct: 228 IPKVRDRRVVTYGFSAQADVRGEGVTPIPGGNRFTAVLRQRDGSFRRIEGIELPMPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNS 368
           V NAL A  + + +G+   L+     K   V  RF  VG    G     I  DY H    
Sbjct: 288 VQNALAAVAVAVEMGVSDELIRGGFAKFGGVKRRFTKVGEVDIGSGAVTIIDDYGHHPVE 347

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI--ALDLADIAIVTDDNPRSEDPE 426
           +  +L   R    GR+I V      R    R  M +   A + AD+       P  E P 
Sbjct: 348 IRAVLAAAREGVQGRVIAVV--QPHRFTRLRDHMDEFQGAFNDADVVYAAPVYPAGEQPI 405

Query: 427 KIR--AEIIHGIPGFIEKGNRIE-----AIRTAIEML---NKQDVLVVAGKG 468
           +    A ++ GI     +G+R       A   A E+       D++V  G G
Sbjct: 406 EGVDSAAMVEGIKA---RGHRSAHLTTGADELAKELAATVQAGDMVVCLGAG 454


>gi|296504948|ref|YP_003666648.1| folylpolyglutamate synthase [Bacillus thuringiensis BMB171]
 gi|296326000|gb|ADH08928.1| folylpolyglutamate synthase [Bacillus thuringiensis BMB171]
          Length = 407

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 16  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 75

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++           V     GL   R D   +I  
Sbjct: 76  KLVKPVVEKLDETDLGEATEFEIITVMAICYFGKFNFCDVVLFETGLG-GRFDSTNVIHP 134

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 135 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 194

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              + +          +               + +         G   +    V      
Sbjct: 195 LYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 254

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +    +     GRFE +        I +D AH    +E ++K +      +
Sbjct: 255 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 311

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 312 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 364

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 365 LVFENWKEAIDTKVEMIAENDVFIITG 391


>gi|228935776|ref|ZP_04098588.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823833|gb|EEM69653.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 433

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 109/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KVVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENRAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMIGENDVFIITG 417


>gi|213966569|ref|ZP_03394720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384716|ref|ZP_07233134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059796|ref|ZP_07251337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131743|ref|ZP_07257733.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928419|gb|EEB61963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 448

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 121/361 (33%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    E         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKFLAFQFENLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLSSLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++   +  G      A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLRERNGVGYYNDSKATNVGAALAAIEGLGSDIGGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +P  I       A   + E+  + D ++
Sbjct: 366 APVAKYCRAAVL-----LGRDAELIAQALGDAVP-LIRVDTVQAAAERSAELAQRGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|109897927|ref|YP_661182.1| FolC bifunctional protein [Pseudoalteromonas atlantica T6c]
 gi|109700208|gb|ABG40128.1| FolC bifunctional protein [Pseudoalteromonas atlantica T6c]
          Length = 426

 Score = 55.3 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 111/365 (30%), Gaps = 20/365 (5%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            + ++ V GT+GK +  +F++Q C  +G           I    +               
Sbjct: 52  KQTVVTVAGTNGKGTTCAFLEQACLAAGKRVGVYSSPHLIQYTERVRINGIDGSEQAHCR 111

Query: 174 LSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLI--------AGSFTNLGRDHIDYHQ 221
                 +    + +     G    L       + +              N+    I    
Sbjct: 112 AFQAVERARGDIPLTYFEFGTLAGLKLVHDANVDIALLEVGLGGRLDAVNVVSPDIAVIT 171

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +        +   +EL+  E   I+  +         +       V        + H+  
Sbjct: 172 SIDLDHQDFLGDTKELVAAEKAGIMRDNIPVVVGEPVKYQALLDAVSQHSALASWQHVDF 231

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              + +   V  + +        P      V   L    L      +  L     +    
Sbjct: 232 DYQLADDYMVWSNHQLSYAQLPIPHIPAQNVSTGLQVIQLLKLDLSEGDLANVITDT--R 289

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +PGR +++G +     I VD AH  ++   +L  IR +   R+ +V G   D+D   R  
Sbjct: 290 LPGRCQYIGYSPA---IMVDVAHNPHATGYLLSQIRKLDYDRLYLVVGMLKDKDI--RSS 344

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +   +   A   +   D PR      I   ++      +E     +A   A  +  +QD+
Sbjct: 345 LADFSNLNAHWMLGGLDVPRGAAAADI-KSVLDEQQKVLEFSTVCQAFEKAKALAQEQDL 403

Query: 462 LVVAG 466
           +VV G
Sbjct: 404 IVVFG 408


>gi|295695684|ref|YP_003588922.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
 gi|295411286|gb|ADG05778.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
          Length = 529

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 124/375 (33%), Gaps = 33/375 (8%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R      A R        I+ +TG+ GK+S    +  +             T   +   
Sbjct: 168 LRAAREKLAQR----PDLIIVGITGSYGKTSTKFILGTL------------LTQKFNVLV 211

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
             +   TP  +             V  V + A   G  +   D +    G  T +G  H+
Sbjct: 212 TPDSYNTPMGVCRVVNERLKPEHEVFVVEMGARQPGDIRELADLVHPKIGVLTAVGPVHL 271

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           +   + +A          + LP +  A++  D+ Y +E+ K   +       +   G  +
Sbjct: 272 ETFGSVEAVART-KYELIKSLPPDGLAVMNYDNPYCRELAKETRHVQVEGYGLESPGARL 330

Query: 278 HLKKVCAIHNKQQVTISVEG--KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            +  V          ++     +       L G  QV N L A  +   +G+    +   
Sbjct: 331 VVSDVHVSEKGTTFVLADRETGESASCRTDLLGRHQVLNILGAVTVARHLGLSLRQIAAG 390

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTITSGRIIVV---FGCG 391
           + +L  VP R + + +   GG   +D A  SN     +   + +  SGR +VV       
Sbjct: 391 IGQLQPVPHRLQLIRS---GGVYVIDDAFNSNPTGTEVALEVLSGFSGRKVVVTPGMVEL 447

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEA 448
           G  ++      G+    + D  I+       E  + I A ++ G           +  EA
Sbjct: 448 GGEEERYNREFGQRMAQVCDHVILVGP----ERTKPIAAGLLDGGLPRDRVSVVTSLEEA 503

Query: 449 IRTAIEMLNKQDVLV 463
                ++L   D ++
Sbjct: 504 TAVLQQLLRPGDAVL 518


>gi|225677415|ref|ZP_03788382.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590559|gb|EEH11819.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 504

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 141/411 (34%), Gaps = 24/411 (5%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V SSA    +    A   +N  +L   +    L+           + ++AV+G+SG
Sbjct: 86  AQIVVHSSAIESDNVELIAAKNNNKTVLHRSDI---LAEIMK------GKYVIAVSGSSG 136

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I   S + +  I     ++S+  +++L       +    S  +   +   
Sbjct: 137 KTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSKLGKSDTFLIEADESDGTMLKIPAK 195

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +S   D     G      +  +   ++        +               E+ +I
Sbjct: 196 IAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSAVLSDSVDIDYDASNSITFGFENGSI 255

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             ++       ++          S     K                T+         L  
Sbjct: 256 RASNIKQHANSIEFDVLNNWIPASATCMTKKQVSSHHPLSSQCV--TLGSSPLKNIVLSN 313

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G  +V NAL A  + I +GI  A + + L +   V  RF  +  N +G ++  DYAH 
Sbjct: 314 AIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARRFSLIA-NIKGVKLIEDYAHH 372

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            N +   L   R+IT G++I +       R +       +I   + D  I+T  +P  + 
Sbjct: 373 PNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRI-FMMFDYVILTPVHPPEDK 431

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           P      + I+  +I       +  N    I   I    +  D+++  G G
Sbjct: 432 PIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPGDIVLFIGAG 482


>gi|59712301|ref|YP_205077.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Vibrio fischeri ES114]
 gi|59480402|gb|AAW86189.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Vibrio fischeri ES114]
          Length = 426

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 124/377 (32%), Gaps = 34/377 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIY 169
           K    ++ V GT+GK S  + ++ I   +G              +   + N       + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMESILINAGYRVGVYSSPHLIRYNERIRINGNDLSDSLI 105

Query: 170 LAKALSYLSSQGVTHVSVE-----ASSHGLDQHRLDGIKLIAGSFTNLG----RDHIDYH 220
                +  + +    +S+      ++      H++D + L  G    L      DH    
Sbjct: 106 TQSFAAIEAWRKDISLSLFEFGTLSALWAFKAHQVDVVLLEVGLGGRLDATNVVDHDVSI 165

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T  A  +      +  +     A I+  +  +        ++            +    
Sbjct: 166 ITSLAVDHVDWLGDDIEVIGFEKAGIFRSEKPAICGQPNPPSSVAAHADDINAELYQVGY 225

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEKL 339
           +     + +  T S +   FD          + NA  A       G++   + +     L
Sbjct: 226 QFDYKVDAETQTWSWKSGAFDLDNLPLPNLPLANAATAIMALGVSGLELSDVNIVEGLTL 285

Query: 340 HVVPGRFEF--VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ 396
             +PGR +    G +     I +D AH  +S   +++ +R    + +I  V G   D+D 
Sbjct: 286 ATLPGRMQRLTCGNSELEPTIILDVAHNPHSAHYLVQQVRQRFPNKKIHAVVGMLHDKD- 344

Query: 397 GKRPIMGKIALDLADIAIVTD-------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                   I   L++   V D         PR+ +  ++ A +   I  +    +   A 
Sbjct: 345 --------IKSTLSEFTGVIDVWYPASLSGPRAANASELTAVLSKEITEYSSPVD---AF 393

Query: 450 RTAIEMLNKQDVLVVAG 466
           + A++     D+++V G
Sbjct: 394 KVALQQAENDDLILVFG 410


>gi|330446844|ref|ZP_08310495.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491035|dbj|GAA04992.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 487

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 143/447 (31%), Gaps = 60/447 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R    G  IF                   QGA  +V S+A S ++      +   I VV 
Sbjct: 62  RLTAKGAEIFFGHSAENV-----------QGASVVVASTAISKENPELMAATELRIPVV- 109

Query: 97  NTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
             R+   L+      +G      +A+ GT GK++  +   QI   +GL    +     + 
Sbjct: 110 --RRAEMLAELMRYRHG------IAIAGTHGKTTTTALTTQIYSEAGLDPTFV-NGGLVK 160

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           S   + RL                      ++    S     H    ++ +    TN+  
Sbjct: 161 SAGTNARLG----------------CSRYLIAEADESDASFLH----LQPMVCVVTNIEA 200

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D +             F   LP    A++  DD   +E++ R               
Sbjct: 201 DHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPRVGRPMLTYGFAEDAD 260

Query: 275 KFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
               L        +   T+  +GK + D    +PG+    NA  A  +    G+D   +L
Sbjct: 261 V--RLVNYTQTGQQGHFTVQRKGKPELDITLNIPGKHNALNATAAIAVATEEGVDDDAIL 318

Query: 334 EHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             L +      RF+ +G    G     +  DY H  + +++ +K  R     + +V+   
Sbjct: 319 RALVEFEGTGRRFDHLGEFDTGNGKVMLVDDYGHHPSEVDVTIKAARAGWEDKRLVMIFQ 378

Query: 391 GGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIE 441
                + +        +     D+ ++ D     E P        +   I   G    I 
Sbjct: 379 PHRYSRTRDLYDDFANVLDQ-VDVLVMLDVYAAGEAPIAGADGRALCRTIRSRGKIDPIF 437

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              + E       ++   D+++  G G
Sbjct: 438 VPEKEELPAVLANIIQNDDLVLTQGAG 464


>gi|327399129|ref|YP_004339998.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
 gi|327181758|gb|AEA33939.1| UDP-N-acetylmuramate--L-alanine ligase [Hippea maritima DSM 10411]
          Length = 460

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 136/430 (31%), Gaps = 49/430 (11%)

Query: 57  HLFIPQAIAQGAEAIV------VSSAYSLQDFSATIRSNTPILVVDN-----TRKFLSLF 105
           + ++ +   QG +  +      +     L   S+ ++++   L+  +     T K   L 
Sbjct: 44  NSYVEKLKKQGVKVYLGHSLSNIEEDVDLVVVSSAVKNDNIELIQADKLNIPTIKRYQLL 103

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A  +      N +AV G+ GK++  S    + + + L    I           +N +   
Sbjct: 104 AHLVNN---SNSIAVAGSHGKTTTTSLSASLLKNANLDPTAI--IGGKLRNINNNVI--- 155

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             I     L   + +      +     GL               TN+  DH+ ++   + 
Sbjct: 156 --IGKCNYLIVEADESDGGFLLLNPKIGL--------------LTNIDNDHLGFYGNFEN 199

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A     +         II  DD   K+    +        S+  +   ++   +   
Sbjct: 200 EKVAFYDFMDN----SEKLIINIDDPIIKQWKNLSKRQNLLTYSIKSKKADVYAYDIQTN 255

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 +I    K  + +          +  +A      I      ++           R
Sbjct: 256 AAYSIFSIKTPTKKIEQIKLKIIGTHNISNALAVVCLAEILEIGEDIIRKTLSEFEGVDR 315

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                 N R  ++Y DYAH    +   LK  + I S  I  VF     R      +M + 
Sbjct: 316 RFTYVGNYRNLKVYDDYAHHPTEIRETLKAAKLI-SKNIYAVF--QPHRFSRTAYLMDEF 372

Query: 406 ALDL--ADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           A     A    V D  P SE P      +I A+ ++ I       N  + ++  ++ + +
Sbjct: 373 AGSFKDAKRVFVLDIFPASESPIDGIDSQILAQKVNEISANAVYINNEDMLKKHLDQIEE 432

Query: 459 QDVLVVAGKG 468
             V+V  G G
Sbjct: 433 DGVVVALGAG 442


>gi|302389514|ref|YP_003825335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200142|gb|ADL07712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 452

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 101/284 (35%), Gaps = 22/284 (7%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ VE SS  L+   +   K       N+  DH++ H+T + Y  AK R+ E    ++  
Sbjct: 159 YIVVEVSSFQLE--NIVRFKPKISVILNITEDHLNRHKTFENYIEAKARILENQDEEDFT 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y DD     + KRA +            + +++K    +  +      +        
Sbjct: 217 VLNY-DDPIVASLEKRARSKIVFFSRKQELQEGVYVKNDVIVIRENGNIYPILKAK---E 272

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   + NAL A  +      +   + E L+  H V  R E+V T      I     
Sbjct: 273 LGIKGSHNLENALAAVAVAWITKANLNNLAETLKDFHGVEHRLEYVDTIDGVKFINDSKG 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV--TDDNPR 421
              ++ +  L+ +        I++   G D+    RP +      +  + ++  T D   
Sbjct: 333 TNPDAAQKALEAVDG-----PIILIAGGYDKKVDFRPFVRSFFGKVKKVVLIGATAD--- 384

Query: 422 SEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +I R     G     +  +  EA+  A       D +++
Sbjct: 385 -----QIERTAREEGFFEVEKAASMREAVEIAKRSAEPGDTVLL 423


>gi|296116438|ref|ZP_06835052.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977031|gb|EFG83795.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 483

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 143/434 (32%), Gaps = 62/434 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA  +VV+S    +D    + +   ++ V    + L+      +     
Sbjct: 59  GHD----AANLGAAQVVVTSTAVQRDNPEVLAARARLIPVVRRAEMLAELMRLRWS---- 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AV GT GK++  S V  + + + L    I     I ++  + R+ +           
Sbjct: 111 --VAVGGTHGKTTTTSLVAAVLEAAKLDPTVI-NGGIIEAYGTNTRMGSGD--------- 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + VEA        RL  +       TN+  +H+D+  T++A   A    F 
Sbjct: 159 --------WMVVEADESDGSFLRLPSVI---TVVTNMDPEHLDHWGTEEAMQAAY-DQFV 206

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    A++  D    ++++ R  +          Q      K +          +  
Sbjct: 207 SNIPFYGFAVLCIDHPAVQQMIPRLSDHRIVTYGFSPQADIRAEKVITDKLGATFEVVVT 266

Query: 296 EGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                       F  P+ G   V NAL A  + + + ID A +         V  RF   
Sbjct: 267 SRNRNRSRRAGPFRLPMLGHHNVQNALAAIAVGVEMEIDDATIRSAFAAFKGVKRRFTRT 326

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           G  + G  +  DY H    +  +LK  R   +  +I V      R    + +  +    +
Sbjct: 327 G-ETGGITVIDDYGHHPVEIAAVLKAARQAGANNVIAV--MQPHRYSRLQSLFNEFCTCM 383

Query: 410 ADI--AIVTDDNPRSEDPEKI--RAEIIHG-----------IPGFIEKGNRIEAIRTAIE 454
            D    I+ D     E P +   R  ++ G           +PG       I AI     
Sbjct: 384 NDAGTVIIADVYAAGEQPIEGMDRDALVEGLRERGHRSVVPLPGPEHLAEMINAI----- 438

Query: 455 MLNKQDVLVVAGKG 468
                D +V  G G
Sbjct: 439 -ARPGDFVVCLGAG 451


>gi|228993196|ref|ZP_04153117.1| Folyl-polyglutamate synthetase [Bacillus pseudomycoides DSM 12442]
 gi|228766522|gb|EEM15164.1| Folyl-polyglutamate synthetase [Bacillus pseudomycoides DSM 12442]
          Length = 436

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/384 (12%), Positives = 106/384 (27%), Gaps = 41/384 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + +               +   + +   TP          
Sbjct: 45  KCVHLAGTNGKGSTLTYMRYMLEAGKYKVGTFTSPYIETFNERISVNGTPIADKEITELV 104

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      +    +     GL   R D   ++  
Sbjct: 105 NMVKPVVEKLDETDLGEATEFEIITVMAICYFGKINFCDIVLFETGLG-GRFDSTNVVHP 163

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + EV+++        
Sbjct: 164 VLTMITNIGHDHMHILGNTLAEIAYEKAGIIKSGVPVITGVQDEEALEVIQKIAQEKNAN 223

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA---AGLCI 323
           +   G Q   +H +      +          ++         +       +         
Sbjct: 224 LYEFGKQFTAVHRRSDEDGEHFDFSCPFASFEEVQISMKGSHQVGNAALALMGIMYLKTY 283

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +          GRFE +        + +D AH    +  ++K ++   + +
Sbjct: 284 LSFLMEEEHIGVGLSEAYWIGRFERL---QSNPDVIIDGAHNPEGIASLVKTVKAHYNDK 340

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            I+V F   GD+         +   D       T D  R+   E++ A          E 
Sbjct: 341 NILVLFTALGDKQLDNMVGQLETIADEMTFTTFTFD--RAISAEELAAYSRKETKQVFE- 397

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            N  EAI   +  L + DV ++ G
Sbjct: 398 -NWKEAIDAKMNNLQENDVFIITG 420


>gi|224368385|ref|YP_002602548.1| MurC [Desulfobacterium autotrophicum HRM2]
 gi|259509767|sp|C0Q8P4|MURC_DESAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|223691101|gb|ACN14384.1| MurC [Desulfobacterium autotrophicum HRM2]
          Length = 456

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 134/424 (31%), Gaps = 44/424 (10%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            +GH    Q        ++V+S    ++    I +    +      + L+          
Sbjct: 54  FNGHR-ADQVKD---VDVLVTSTAISKNNPEVIEAAERSIRTIPRAEMLAELMRI----- 104

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
            +  +AV+G  GK+S  + +  I  ++GL    +     + S   +        I     
Sbjct: 105 -KYAIAVSGAHGKTSTTAMIATILNQAGLDPTVV-VGGLLKSIGTNAHHGKGDYIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                             + TN+  +H+D+++  +   +     
Sbjct: 163 ESDGSFLKYA--------------------PAIAAVTNIDLEHLDFYKDIEDIKD-NFVK 201

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   +P    A++  D+ + + ++ R                     +           +
Sbjct: 202 FINSVPFYGLAVLCLDNEHIQAILPRITARYTTFGLSAQADLAARGIRFEGRRGYFT-VV 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +    D    L G+  + NAL A  + + + +D +++ E LE++  V  R E  G   
Sbjct: 261 HGKEVLGDITLNLSGKHNISNALAAIAVALELKVDFSVIKEALEQIEGVKRRLEIKG-ER 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               +  DY H    ++  L  +R     + +VV        + K       + A   +D
Sbjct: 320 NSITVVDDYGHHPTEVKTTLAAVREGWPDKRVVVVFQPHRYSRTKALFDEFTR-AFYQSD 378

Query: 412 IAIVTDDNPRSEDPEKIRAEII-------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  V      SE P      +        HG    I   +    +    + L   D+++ 
Sbjct: 379 LLFVLPIYAASEQPIDGIDSLKLCNGIQEHGHKNVICVKDFESCLSILSDTLEPGDLVLT 438

Query: 465 AGKG 468
            G G
Sbjct: 439 LGAG 442


>gi|103487383|ref|YP_616944.1| Mur ligase, middle region [Sphingopyxis alaskensis RB2256]
 gi|98977460|gb|ABF53611.1| Mur ligase, middle region [Sphingopyxis alaskensis RB2256]
          Length = 462

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 122/395 (30%), Gaps = 57/395 (14%)

Query: 95  VDNTRKF----LSLFASR----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
           V +        L+  +               + V GTSGKS+V   +  I +R+G     
Sbjct: 81  VPDVAAANTLGLARMSRADLNAALFNAAAKGVGVGGTSGKSTVTGMIGWILERAGQKPTV 140

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +      +  + D    TP    L    +              S        +       
Sbjct: 141 MNGAVMRNFASPD----TPFASALVGGDAIY-----------VSEVDESDGSIALYAPDV 185

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH           +   RLF +   K   A+I ADD  S  ++         
Sbjct: 186 AVVTNISLDHKS--------LDELHRLFGDFAAKARIAVINADDPESAPLLA----GANV 233

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +         I       + N  +  +       D    +PG     NAL A     A+ 
Sbjct: 234 LRFGFGDNAAIRGSDFEPLPNGCRFAVHFAADSHDVRLQMPGRHNAANALAAIAAARALN 293

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I  A  +  L     +  R+E +G       +  D+AH  + +   L  +  +  GR ++
Sbjct: 294 IPVAQSVAALADFAGLARRYEVLGQAG-DVTVIDDFAHNPDKVAATLAAVAELP-GRALL 351

Query: 387 VFGCGGDRDQGKRPIMG-KIALDLA------DIAIV--------TDDNPRSEDPEKIRAE 431
            F   G    G    MG ++A   A      D   V        T D  RS   E + A+
Sbjct: 352 FFQPHG---YGPLRQMGKELATSFAAGMRDGDRLYVCDPVYFGGTVD--RSIGSEALVAD 406

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I+ G    +    R       ++     D +++ G
Sbjct: 407 IVAGGADAVHLTTRANCGAAMLDEARPGDRILILG 441


>gi|89074169|ref|ZP_01160668.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
 gi|89050105|gb|EAR55631.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
          Length = 487

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 138/419 (32%), Gaps = 50/419 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           QGA  +V S+A S ++      + + I +V   R+   L+      +G      +A+ GT
Sbjct: 80  QGASVVVASTAISKENPELVAATESRIPIV---RRAEMLAELMRYRHG------IAIAGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  +   QI   +GL    +     + S   + RL                     
Sbjct: 131 HGKTTTTALTTQIYSEAGLDPTFV-NGGLVKSAGTNARLG----------------CSRY 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            ++    S     H    ++ +    TN+  DH+D +             F   LP    
Sbjct: 174 LIAEADESDASFLH----LQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGL 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I        H      +  +    +  
Sbjct: 230 AVMCIDDPVVRELLPRVGRPMITYGFAEDADVRITNY-TQTGHQGHFTVLRKDKPALNIT 288

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYV 360
              PG+    NA  A  +    G+D   ++  L +      RF+ +G    G     +  
Sbjct: 289 LNTPGKHNALNATAAIAVATEEGVDDEAIMRALIEFEGTGRRFDHLGEFETGNGNVMLVD 348

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDD 418
           DY H  + +++ ++  R   + + +V+        + +        +     D+ ++ D 
Sbjct: 349 DYGHHPSEVDVTIQAARAGWADKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLVMLDV 407

Query: 419 NPRSEDP------EKIRAEIIH-GIPGFIEKGNRIE--AIRTAIEMLNKQDVLVVAGKG 468
               E P        +   I   G    I      E  AI     +++  D+++  G G
Sbjct: 408 YSAGEAPIAGADGRALCRTIRSRGKIDPIFVPEAEELPAILA--NIIHNDDLVLTQGAG 464


>gi|226941033|ref|YP_002796107.1| FolC [Laribacter hongkongensis HLHK9]
 gi|226715960|gb|ACO75098.1| FolC [Laribacter hongkongensis HLHK9]
          Length = 424

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/380 (14%), Positives = 111/380 (29%), Gaps = 35/380 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---DNRLTTPSPI 168
           +    ++ V GT+GK SV + + +I   +G           +    +   D    +   I
Sbjct: 39  RPGFPVITVGGTNGKGSVCAMLTRILASAGYRVGTYTSPHLMVYNERIAIDAESLSDEAI 98

Query: 169 Y--------------LAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAGSFTN 211
                          L        +     V  +     L+     RLD + +       
Sbjct: 99  VRGLAAVEAGRGDVPLTYFEFGTLAAMWNFVDAKVDVAILEVGLGGRLDAVNVFEPDCAA 158

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +    +      Q +                 A   A  A  +   +   +A      + 
Sbjct: 159 VVSVDL----DHQDWLGDNREDIGFEKAGIFRAGKPALCADPQPPARLVGHAAAIGAPLW 214

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
             G+     +   +  +     S              +      ++A    +   +    
Sbjct: 215 LAGRDFGFTRTDPLQWEFWCGQSRRHALPTPALRGNYQMGNAALVLAILEAVRDRLPVGA 274

Query: 332 VLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFG 389
                  L    P RF+ +          +D  H  +++  ++ +++T+    R + VF 
Sbjct: 275 GAVRRGLLEVEWPARFQVLPGRPV---TVLDVGHNPHAIRAMVSSLQTLNYAERRLAVFS 331

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIH-GIPGFIEKGNRI 446
              D+D      + ++A D  D   V    D+PR+     + A +   G+    E  +  
Sbjct: 332 MLADKDVD---SVIELAKDEFDEWWVAPIADSPRAMPVAGLVARLRAHGVTRIHECADLA 388

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
            A R A E   + D + V G
Sbjct: 389 TAYRQAREQATENDRITVFG 408


>gi|269214411|ref|ZP_05986500.2| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           lactamica ATCC 23970]
 gi|269209810|gb|EEZ76265.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           lactamica ATCC 23970]
          Length = 489

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 127/397 (31%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 89  LERVGEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNER 148

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 149 IAVNAEPVSDDTITASFERIETARGEISLTYFEFNALAAVDIFIREQVDVMILEVGLGGR 208

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD + +  G    +    +D+          ++   +  + +     I   +   + ++ 
Sbjct: 209 LDAVNVFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPESLVA 267

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY----- 313
            A   G ++L V  +    H  +    + + +   S          P P     Y     
Sbjct: 268 HAEAIGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDGPARNRNALPFPALRGAYQLSNA 326

Query: 314 -NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             AL                ++    L   PGRF+ +          +D  H  ++   +
Sbjct: 327 ACALTVLECLNGKLPADIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 383

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D G    + +I  D  D   +   D PR    E ++ 
Sbjct: 384 RRSLMNLAFAQKRTAVFSMLSDKDIGG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQD 440

Query: 431 EI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++  HGI          EA R A     + D +VV G
Sbjct: 441 KLHEHGIENIQTFAAVREAYRAAASKAGENDRIVVFG 477


>gi|55980312|ref|YP_143609.1| folyl-polyglutamate synthetase [Thermus thermophilus HB8]
 gi|55771725|dbj|BAD70166.1| folyl-polyglutamate synthetase [Thermus thermophilus HB8]
          Length = 414

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 12/125 (9%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR + +    RG  + +D AH       + + +R         V G   D+D      
Sbjct: 280 NPGRLQRL--LWRGRELLLDGAHNPEGALALREALRFHGLLPAAFVLGFSRDKD---HAA 334

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M +    L  + +    +PRSEDP      ++   PG     + +EA+  A     +   
Sbjct: 335 MAEALRGLGPVVLTRYASPRSEDP----RALLPLFPGAKVVEDPLEALEEAFS--REG-R 387

Query: 462 LVVAG 466
           +VVAG
Sbjct: 388 VVVAG 392


>gi|154494018|ref|ZP_02033338.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
 gi|154086278|gb|EDN85323.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
          Length = 453

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 106/361 (29%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++       I +++G+ +   G               
Sbjct: 103 EFAGRYTD---AKMICITGSNGKTTTTMLTYHILRQAGVDAGLAGNVGN----------- 148

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  LD   +   K       N+  DH+D +  +
Sbjct: 149 ---SLALQV-----AEDPHAVYVIELSSFQLD--NMYDFKADIAILLNITPDHLDRYNYE 198

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +             E   I + DD      + + H               +      
Sbjct: 199 MQNYVDAKFRIIRNQTAEDAFIFWNDDPIIAREIAKRHPQATLYPFAETHEAGVKGYTED 258

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                +    +   ++   L  L G   +YN+L +      + I    +   L     V 
Sbjct: 259 KKIIIETSNGTFTMEE--DLLALSGTHNLYNSLASGIASKLVDIHDENLRASLSDFTGVE 316

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V        I    A   NS    L+++         +V   GG         + 
Sbjct: 317 HRLEKVARVRGVDYINDSKATNVNSCWYALQSMT------TPLVLILGGTDKGNDYSEIE 370

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ++        I         D  K+       +P   +  +  EA+  A ++  K D ++
Sbjct: 371 ELVKKKVHALIF-----LGVDNAKLHGFFDGKVPVIEDARSMEEAVAKAYKLAEKGDTVL 425

Query: 464 V 464
           +
Sbjct: 426 L 426


>gi|314918543|gb|EFS82374.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL050PA1]
          Length = 498

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 81/303 (26%), Gaps = 24/303 (7%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +          +VE SS  L       +   A    +        H++      A  +  
Sbjct: 175 AMADEINYDVFAVELSSFQLHWSNSLSLHSAAVLNLHQDHLEWYAHESDPLGSYAADKAR 234

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  S     AD A    V       G R +          +  +       +  + 
Sbjct: 235 IYHQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVE 294

Query: 295 VEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                                 V NAL AA L  + G+ +  V + L  LH+   R E V
Sbjct: 295 QRATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETV 354

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A   ++    ++          IV    G  +      ++   A  L
Sbjct: 355 HQAGGITWVDDSKATNPHAANSSMRAFE------HIVWIAGGQAKVTHFDNLVTTHAGKL 408

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGNR-----IEAIRTAIEMLNKQDVL 462
             + ++  D  R      I   +    P    +   +        A+  A +M    D +
Sbjct: 409 RGVVVLGTD--RG----IIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 463 VVA 465
           ++A
Sbjct: 463 LMA 465


>gi|138896357|ref|YP_001126810.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|166224692|sp|A4IRW1|MURC_GEOTN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134267870|gb|ABO68065.1| UDP-N-acetyl muramate-alanine ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 434

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 108/351 (30%), Gaps = 49/351 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++  A  + + P++      +FL   AS+         +AVTG+ GK++
Sbjct: 64  VIAGNAFPDTHEEIEAARQLSVPVIR---YHRFLGELASKFTS------IAVTGSHGKTT 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG           ++          +                
Sbjct: 115 TTGLLAHVMQGAHPTSYLIG--DGTGKGEPGSKYFVFEACEYRRHF-------------- 158

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY       F+A  ++ +++       +   
Sbjct: 159 -----------LSYFPDYAIITNIDFDHPDYFANIDDVFSAFQQMAQQVKKG---IVACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y + +  +          +G +  F     V                   F  P  G
Sbjct: 205 DDPYLQNIQAKV---PILFYGLGEENDFQARNIVKTTEGTAFDVFVRNTFFASFTIPRFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC   GID+  +   L+    V  RF       +   +  DYAH    
Sbjct: 262 THNVLNALAVIALCHYEGIDAGTIAARLQTFQGVKRRFTEKTVGRQ--VLIDDYAHHPRE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD 417
           +   L+  R    GR +V         R Q       +     AD   + D
Sbjct: 320 IMATLEAARQKYPGREVVAIFQPHTYTRTQTFLSEFAESLQQ-ADYVYLCD 369


>gi|304384941|ref|ZP_07367287.1| tetrahydrofolate synthase [Pediococcus acidilactici DSM 20284]
 gi|304329135|gb|EFL96355.1| tetrahydrofolate synthase [Pediococcus acidilactici DSM 20284]
          Length = 434

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/391 (13%), Positives = 118/391 (30%), Gaps = 34/391 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+  +      I+ + GT+GK S  + + +  + +G  +      + I    Q     +
Sbjct: 32  LAALGHPDLNYRIIHLAGTNGKGSTGAMLAKSLENAGYRAGHFSSPAMIDQREQIQINGS 91

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI----------------AGS 208
                   AL    +Q +      AS    +   L  ++                     
Sbjct: 92  MIEKEAFVALYEKIAQKLPQTITTASISIFEWFTLIMLEYFAENGVEWAIIEAGLGGEND 151

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--- 265
            TN+         T   Y + ++         ++ A I   DA      K+         
Sbjct: 152 ATNIIEHPAAVVFTHIDYDHVQILGDTLEQIAQNKAGIIKKDATVFIAPKQTQQVRTILE 211

Query: 266 -----RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                +  +   Q     ++ +       +V++  +  +              + L    
Sbjct: 212 KKAVQKRATSVIQAVPGTIQVIKRSITGFKVSLHAKTINIAATPFKLLGDYQIDNLTTVV 271

Query: 321 LCIAIGIDSA--LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                  +       + L ++       +      R   + +D AH  +  + ++K +  
Sbjct: 272 TVYEWLFNQQVINDWQPLIEMMQHIQIPDRFQVLQRDPLVILDGAHNVDGTQALIKGLSN 331

Query: 379 IT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNP-RSEDPEKIRAEIIHG 435
           +  + ++  + G   D+D      M  +    AD    V  DNP R+  P  I  + + G
Sbjct: 332 LNANHKLFFILGFLKDKDYSG---MLHLYAKAADRIFAVQPDNPSRALRPTTI--QTVLG 386

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +   A++ A+ + +    +VV G
Sbjct: 387 NKVVGSYRDLYTALQQALTLADADTTIVVTG 417


>gi|238785195|ref|ZP_04629187.1| Folylpolyglutamate synthase [Yersinia bercovieri ATCC 43970]
 gi|238713873|gb|EEQ05893.1| Folylpolyglutamate synthase [Yersinia bercovieri ATCC 43970]
          Length = 404

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 113/378 (29%), Gaps = 44/378 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  + GT+GK +    ++ I   +GL                 + L     + + 
Sbjct: 34  KPAPKVFTIAGTNGKGTTCCTLESILLAAGLRVGVYSS---------PHLLRYTERVRIQ 84

Query: 172 KALSYLSSQGVTHVSVEASSHGL-----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 +    +   +EA   G+     +   L  ++L   +  ++    +       A 
Sbjct: 85  GQELPEAEHSHSFAQIEAGREGISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDAT 144

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--- 283
                 +                D  S    K       +   VG       +  V    
Sbjct: 145 NIVDSDVAAITSIAIDHTDWLGFDRESIGREKAGVFRAGKPAVVGEPDMPQSIADVAAQL 204

Query: 284 ----------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALV 332
                        ++Q    S +  D  +         + NA  A  +    G+     V
Sbjct: 205 GAPLYQRDKAWQFSQQANRWSWQCDDQQWRDLPLPNVPLANAATALAVLHYCGLPLSESV 264

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
           +    +   +PGRF+ V        + +D AH  ++   +   +  +   G++  V G  
Sbjct: 265 IRQGLQAARLPGRFQIVSEQPL---LILDVAHNPHAARYLTDRLAQLPKQGKVRAVVGML 321

Query: 392 GDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D       G +A   +  D       + PR        A++   +    +  +   A
Sbjct: 322 SDKDIA-----GTLACLSEQVDEWYCALLEGPRG----ATAAQLAEHLTLSRQFSDVETA 372

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++    QDV++V G
Sbjct: 373 WRQAMQDAQPQDVVIVCG 390


>gi|196249983|ref|ZP_03148678.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
 gi|196210497|gb|EDY05261.1| UDP-N-acetylmuramate--alanine ligase [Geobacillus sp. G11MC16]
          Length = 434

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 108/351 (30%), Gaps = 49/351 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++  A  + + P++      +FL   AS+         +AVTG+ GK++
Sbjct: 64  VIAGNAFPDTHEEIEAARQLSVPVIR---YHRFLGELASKFTS------IAVTGSHGKTT 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG           ++          +                
Sbjct: 115 TTGLLAHVMQGAHPTSYLIG--DGTGKGEPGSKYFVFEACEYRRHF-------------- 158

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY       F+A  ++ +++       +   
Sbjct: 159 -----------LSYFPDYAIITNIDFDHPDYFANIDDVFSAFQQMAQQVKKG---IVACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y + +  +          +G +  F     V                   F  P  G
Sbjct: 205 DDPYLQNIQAKV---PILFYGLGEENDFQARNIVKTTEGTAFDVFVRNTFFASFTIPRFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC   GID+  +   L+    V  RF       +   +  DYAH    
Sbjct: 262 THNVLNALAVIALCHYEGIDAGTIAARLQTFQGVKRRFSEKTVGRQ--VLIDDYAHHPRE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD 417
           +   L+  R    GR +V         R Q       +     AD   + D
Sbjct: 320 IMATLEAARQKYPGREVVAIFQPHTYTRTQTFLSEFAESLQQ-ADYVYLCD 369


>gi|297569452|ref|YP_003690796.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925367|gb|ADH86177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 497

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/411 (16%), Positives = 118/411 (28%), Gaps = 55/411 (13%)

Query: 66  QGAEAIVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            G + I++S      +    A   +  PI+            A          ++AVTGT
Sbjct: 81  AGVDVILLSPGIPLDIPALDAARAAGVPII---------GELALA-PEYLRTPVIAVTGT 130

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+V + V ++ + +G + F  G   T      +                        
Sbjct: 131 NGKSTVTTLVGELLRAAGRNVFVGGNLGTP---LCEYLAGPQEA---------------D 172

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS  LD               N+  DH+D +    AY  A          +E  
Sbjct: 173 WAVLEVSSFQLDS--AGKFSPDIAVLLNISPDHLDRYPDYAAYA-ASKWRIVANQGREQW 229

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  DD     ++     A       G                       +        
Sbjct: 230 AVINRDDPEILRLLAAGPPASRVFGFGGRGMAGPLAANQSREAAPGPPVDGLRLCLTQED 289

Query: 304 FPLPGEFQVYNALVA----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     N L                   G   A V   L     +P R   V T +
Sbjct: 290 EHCEEYPLPANELAVEPNRQNALAAVLAARLAGCPPAAVGPALAAFQALPHRLALVATVA 349

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                    A    ++   L+ +        +V+   G D+    R ++  I   +  + 
Sbjct: 350 GVRYYDDSKATNIGAVISALQGLPG-----PVVLIAGGLDKGGDYRLLLPAIKEKVRAVV 404

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++          EK+RA +   +P   E  +   A+R A ++    + +++
Sbjct: 405 LIGS------AREKMRAALAPAVP-VTEAADLPSAVRIATQLAAAGEAVLL 448


>gi|283458376|ref|YP_003363000.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
 gi|283134415|dbj|BAI65180.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 499

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 143/411 (34%), Gaps = 41/411 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S+A   +D    + +    L V +  + L+             ++AV GT GKS+ +
Sbjct: 91  VVISTAI-REDNPELVAARAQGLRVLHRSEALAAVMGE------SQVVAVAGTHGKSTTS 143

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S +  +  + G   SF +G                P  I++A+A     S      ++  
Sbjct: 144 SMISVMFDQLGAQPSFAVGTVIAGRGMNAHLGAQGPGSIFVAEADESDGSFVRYRPAIAV 203

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  DH+D+++T +  F A  R    L P         D
Sbjct: 204 -------------------VTNVEPDHLDFYETDERVFEAFNRFVGSLAPNGVVVTCADD 244

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF----- 304
              +    +        V         + + ++ +  +     +S   +     +     
Sbjct: 245 AGAADLAARSRAAGVPVVTYGESADADLRISEITSAGSSSSSHLSWSFECHGVRYEGEQD 304

Query: 305 ---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     NA  A    +  G ++A +   L +      RF   G    G +++ D
Sbjct: 305 LALKVPGIHNQLNASAAFASALISGYEAADIARALAEFVGADRRFTLRG-EVAGVKVFDD 363

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAH    +   L+  RT+  G  + V        R +       + AL +AD A V D  
Sbjct: 364 YAHHPTEVFRALETGRTVADGHNLYVIFQPHLFSRTREFAKEFAQ-ALSMADRAHVLDIY 422

Query: 420 PRSEDP-EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P  E P E + +E+I G     +      +AI   +      D+++  G G
Sbjct: 423 PARELPIEGVTSELITGAGFSEVRYATAEDAIEDIVTCAQDGDIVMTVGAG 473


>gi|118602749|ref|YP_903964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567688|gb|ABL02493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 433

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 121/393 (30%), Gaps = 52/393 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I +S   +  +          I V+ +         SR        I+ +TG++GKS+V 
Sbjct: 65  IFISPGIAQNESIVIWAKEQNIPVISDI-----ELFSRFAKAP---IIGITGSNGKSTVT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             + Q+   +G+     G   T      + ++                     +  +E S
Sbjct: 117 QLLTQMIINAGMQVAMGGNIGTPVLDCLNEKI--------------------EYYVLELS 156

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ LD      + LI G   N+  DH+D +Q  + Y N+K+ L++         ++   D
Sbjct: 157 SYQLDYS--HHLNLIVGVVLNITPDHLDRYQNFKHYINSKLSLYQHCQH-----LVINLD 209

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                    A   G  +         +       +     V +S+               
Sbjct: 210 EPLTPPKVNAKCFGISIPKQADDFGTVTCHDTYYLLKGDNVLMSINEVQLIGEHNT---- 265

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L   I +    +++ ++    +  R E+V             A       
Sbjct: 266 --RNILAALALGDQIRLPIISMIQSIKNFKGLEHRLEWVAKKQNIDYYNDSKATN---AI 320

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  I+ +      +V   GG   Q     + K+        I+       +  ++   
Sbjct: 321 STITAIQALMRKHQNIVLILGGIAKQENYTPLFKLINKSITSVILI-----GQSAQQFEQ 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           EI              +A+  A  M+N   +L+
Sbjct: 376 EI---NTNTSHAKTMKDAVNVAHSMINNGTILL 405


>gi|330997827|ref|ZP_08321662.1| UDP-N-acetylmuramate--L-alanine ligase [Paraprevotella xylaniphila
           YIT 11841]
 gi|329569715|gb|EGG51480.1| UDP-N-acetylmuramate--L-alanine ligase [Paraprevotella xylaniphila
           YIT 11841]
          Length = 458

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 132/427 (30%), Gaps = 50/427 (11%)

Query: 60  IPQA-IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           IP A   + A  +V + A   +              ++   + L        G      L
Sbjct: 63  IPSACRDKDACLVVYTPAIPCEHAELAYFK-ANGFEIEKRAQVLGALTRAHKG------L 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GK++ +S    I  +S +          I+     N + +P   Y+        
Sbjct: 116 CVAGTHGKTTTSSMAAHILHQSHVDCNAF--LGGITKNYGTNYILSPKSDYVVIEADEFD 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                                  +   A   T    DH+D + T++AY     R +  L+
Sbjct: 174 RSFHW------------------LTPYASVITATDPDHLDIYGTKEAYL-ESFRKYTSLI 214

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 +++       +V +             +  + I +       +     IS  G 
Sbjct: 215 RPGGFLVLHEGLEMQPDVQEGVMTYSYSRGHGDFHAENIRIGDGEIYFDF----ISPLGH 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             D    +P    + N + A  L    G+    + + +     V  RF+F    S     
Sbjct: 271 IKDVQLGVPVSINIENGIAAMALAQISGVTPEEIKQGMASFRGVDRRFDF-RMKSDKAVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVT 416
             DYAH    +   + ++R +  G+ I          +  R    + A  L+  D  I+T
Sbjct: 330 LTDYAHHPAEIRQSVISVRELYRGKKIAAIFQPHLYTRT-RDFYKEFAGSLSLLDEVILT 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH- 469
           D  P  E P        I   +   +   +    R E +   +   +  DV ++ G G  
Sbjct: 389 DIYPAREAPIPGVTSRLIYDRLAPTVKKCLC---RKEDVPEIVRQSDA-DVFILLGAGDL 444

Query: 470 ETV--HI 474
           E+    I
Sbjct: 445 ESYAPQI 451


>gi|325168919|ref|YP_004280709.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
 gi|325064642|gb|ADY68331.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
          Length = 1056

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 122/408 (29%), Gaps = 53/408 (12%)

Query: 91   PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            P+L V +  + +         +   ++LAVTG++GK++V + +       G  +      
Sbjct: 675  PVLKVADNMQAVLAMGDYARSRMTGSVLAVTGSAGKTTVVAMLAHALSAWGNVAKSNHNA 734

Query: 151  STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            +  +  A +                        HV +E +   +        +     FT
Sbjct: 735  NLPAGVAWNL---------------ASIPWETPHVVLELAIGKMAISARMA-RPKVAIFT 778

Query: 211  NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
            N+   H+    T       K  +F  + P ++  +      +       +      V   
Sbjct: 779  NVLPAHLGEKSTVTDIARTKSAIFLGMEPGDTAVLNRDMLEWDTVHDAASRRKLEIVTYG 838

Query: 271  GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
              +     L +  A        I    ++  FL    G     N L        +G    
Sbjct: 839  TSEECMCQLLRYDAASRHAHARI--RNREVSFLIGAAGSHMALNGLAVLAAISVLGHPLE 896

Query: 331  LVLEHLEKLHVVPGRFEFVGTNSRGGR---IYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              +  LE    +PGR E +     G R   I   Y     S+   L  +     GR I V
Sbjct: 897  PAIAQLESFAALPGRGEEIHLLLDGRRLTVIDDAYNANPGSMRAALARLGDHIGGRRIAV 956

Query: 388  FGCGGDRDQGKRPIMGKIAL----DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
             G   +   G+     ++A        D   VT D             +       +   
Sbjct: 957  LGEMAELGPGRAAYHTELAAFIQDRSIDEVYVTGD-------------LYSDFWKALSPS 1003

Query: 444  NR------IEAIRTAI-EMLNKQDVLVVAGKG------HETVHIVTNG 478
            +R       +A++  + E L   D ++   KG      HE V  + N 
Sbjct: 1004 SRGLYAESRQALKEILRERLVDGDTVLF--KGSHSTGMHELVEWLKNN 1049


>gi|33862300|ref|NP_893860.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9313]
 gi|44888177|sp|Q7V9C3|MURC_PROMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33640413|emb|CAE20202.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 488

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 83/268 (30%), Gaps = 26/268 (9%)

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                A +      + +           +   ++K   +A          G       +C
Sbjct: 202 HTDHYANLDELINTMKRFGQGCRRLLANFDCPILKEHFDATAWWSVKTSAGVDFAALPIC 261

Query: 284 AIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              ++    I  +GK       P+PG   + NA+ A   C   G+    V + L  L   
Sbjct: 262 LNGDQTIADIYEQGKRMGQITLPMPGLHNLSNAMAAIAACRLEGLSFEDVQQGLADLQPP 321

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----------TSGRIIVVFGCGG 392
             RF+F G    G +I  DYAH  + +   L   R I             RI+ VF    
Sbjct: 322 GRRFDFRG-TWEGRQIVDDYAHHPSEVSATLTMARLIVTSGRSQLPNPPKRILAVFQPHR 380

Query: 393 -DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAI 449
             R         +   + AD  ++       E+P  I+      +   I     N   A+
Sbjct: 381 YSRTNKFLYDFARALGE-ADAVLLAPVYSAGENP--IQGATSESLAKAIRIQHPNLPVAV 437

Query: 450 RTAIEMLN--------KQDVLVVAGKGH 469
                 L         K D+++  G G+
Sbjct: 438 AENFNQLTLLVQKHSLKGDLVLAMGAGN 465


>gi|229152659|ref|ZP_04280847.1| Folyl-polyglutamate synthetase [Bacillus cereus m1550]
 gi|228630805|gb|EEK87446.1| Folyl-polyglutamate synthetase [Bacillus cereus m1550]
          Length = 433

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIANEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++           V     GL   R D   +I  
Sbjct: 102 KLVKPVVEKLDETDLGEATEFEIITVMAICYFGKFNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              + +          +               + +         G   +    V      
Sbjct: 221 LYEMDNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +    +     GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIAENDVFIITG 417


>gi|197335324|ref|YP_002156514.1| bifunctional protein FolC [Vibrio fischeri MJ11]
 gi|197316814|gb|ACH66261.1| bifunctional protein FolC [Vibrio fischeri MJ11]
          Length = 426

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 113/372 (30%), Gaps = 24/372 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G           I    +           L 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMESILINAGYRVGVYSSPHLIRYNERIRINGNDLSDSLI 105

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR------------DHIDY 219
                        +S+     G     L   K        L              DH   
Sbjct: 106 SQSFAAIEAWRKDISLSLFEFG-TLSALWAFKAHQVDVVLLEVGLGGRLDATNVVDHDVS 164

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             T  A  +      +  +     A I+  +  +        ++            +   
Sbjct: 165 IITSLAVDHVDWLGDDIEVIGFEKAGIFRSEKAAICGQPNPPSSVAAHADDINADLYQVG 224

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE-HLEK 338
            +     +    T S +   FD          + NA  A       G++ + +      K
Sbjct: 225 YQFDYNVHADTQTWSWKSGAFDLDNLPLPNLPLANAATAIMALGVSGLELSDINIVEGLK 284

Query: 339 LHVVPGRFEF--VGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRD 395
              +PGR +    G +     I +D AH  +S   +++ +R    + +I  V G   D+D
Sbjct: 285 SARLPGRMQRLTRGNSEFEPTIILDVAHNPHSAHYLVQQVRQRFPNKKIHAVVGMLHDKD 344

Query: 396 QGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +G+    + D+        PR+ +  ++ A +   I  +    +   A + A++
Sbjct: 345 IK--STLGEFTGVI-DVWYPASLSGPRAANASELTAVLSKEITEYSSPVD---AFKVALQ 398

Query: 455 MLNKQDVLVVAG 466
                D+++V G
Sbjct: 399 QAESDDLILVFG 410


>gi|333010253|gb|EGK29686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri VA-6]
          Length = 457

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 104/360 (28%), Gaps = 36/360 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV GT GK++ A     I ++ G     +       +F    RL       +  
Sbjct: 101 HDRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +                 + +            NL  DH D     +A       
Sbjct: 160 DEYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC         +     K       +   
Sbjct: 202 KQFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    K  +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 LLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL- 409
           + G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL 
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLA 375

Query: 410 -----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 376 PSLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|329940944|ref|ZP_08290224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseoaurantiacus M045]
 gi|329300238|gb|EGG44136.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseoaurantiacus M045]
          Length = 489

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 104/317 (32%), Gaps = 29/317 (9%)

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            + TP  + +  A +  S +    ++VE SS+ L       +++ + +  NL  DH+D+H
Sbjct: 159 NIGTP-IVDVVLAGADESGEPYDVLAVELSSYQLHW--APSLRVHSAAVLNLAPDHLDWH 215

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            + +AY  A  +       + +     AD A    V +     GCR +            
Sbjct: 216 GSMEAY--AADKGRVYEGNRIACVYNMADKATEDLVREADVEEGCRAVGFTLGTPGPSQL 273

Query: 281 KVCAIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            V       +  +    K+            P    + NAL AA L  A G+ +  V + 
Sbjct: 274 GVVDGLLVDRAFVEDRQKNAQELAEVSDVNPPAPHNIANALAAAALARAYGVPAKAVRDG 333

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L        R   V        I    A  +++ +  L    +      IV    G  + 
Sbjct: 334 LRAFTPDAHRIAHVADVDGVAYIDDSKATNTHATQASLAAYES------IVWIAGGLAKG 387

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NR------IEA 448
                ++   A  L    ++        D   IR  +    P       +R        A
Sbjct: 388 ATFDELVAGAAGRLRGAVLI------GADRALIREALARHAPEVPVVDLDRTDTGAMRAA 441

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A ++    D +++A
Sbjct: 442 VAEARKLARPGDTVLLA 458


>gi|282882294|ref|ZP_06290925.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
 gi|281297844|gb|EFA90309.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
          Length = 510

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 115/359 (32%), Gaps = 32/359 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +L +TG+ GK+SV      I +    +                +   TP  +       
Sbjct: 161 KVLGITGSFGKTSVKFISDTILKEKYRT------------KNTPSSFNTPMGLSKVINNE 208

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              +  V    + A   G        +    G  T +G  H+   +T +   N       
Sbjct: 209 LDKNHEVFIAELGAKQKGEIDEVAKLVSPDIGIITAVGPTHMHLFKTIENIQNT-KYELI 267

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E LP++  AI   D+ Y K +  +      R      +   ++ K +         T+ +
Sbjct: 268 EDLPEDGIAIFNYDNDYVKPLADKTKKKTYRYGIKDIEKLDVYAKDIRVNEKGSTFTLGI 327

Query: 296 EG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +G  +      L G   + N L  A     +G +   +   +EK+  V  R   V + + 
Sbjct: 328 KGLGEISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIKNGIEKVKAVEHRLNIVPSPAG 387

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLAD 411
              I   +          L  I     G+ I++       G  ++ +   +G     + D
Sbjct: 388 YVVIDDAFNSNPVGFRAALSVIDEFKEGKKIIITPGMVELGAIEEEENYKIGIEIAKVCD 447

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-------TAIEMLNKQDVLV 463
             I+          +KI A I   +       +RI  ++         +E+    DV++
Sbjct: 448 YVILVG--------QKISAPIKRALIDNNFNEDRIFTVKSLNDGTSKLVEIAKAGDVVL 498


>gi|254282152|ref|ZP_04957120.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           NOR51-B]
 gi|219678355|gb|EED34704.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           NOR51-B]
          Length = 466

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 133/418 (31%), Gaps = 45/418 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +VVSSA +  +        + I +V    + L+      YG      +AV GT G
Sbjct: 62  AGADVLVVSSAIADTNPELQAAKASRIPIVPRA-EMLAELMRYRYG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  I   +G   +F IG                   +   ++ +         
Sbjct: 115 KTTTTSLIASILGEAGEDPTFVIGGVLNQGGSNARLGDGRFLVVEADESDASFLH----- 169

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +  +    TN+  DH+D++    A +      F   LP    A
Sbjct: 170 -----------------LLPMMSVVTNVEADHMDHYGGDYANYERAFVEFLHNLPFYGLA 212

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD   + V+                   +   +   +     V      K  +   
Sbjct: 213 VMCIDDPGVRAVLPTVTRQVLSYGRDDTADFQLTALEGDGMVTLLTVRRPEPCKTLELTL 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVD 361
            +PG     NA  A  +   +GI    +   L +   V  RF  +GT            D
Sbjct: 273 NMPGVHNALNATAAVAVATELGIADDAIAAGLARFGGVGRRFSRLGTVRWEHGEALLIDD 332

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD--IAIVTDDN 419
           Y H    +   L   R+    R +V+        +  R +       L+D  + ++ D  
Sbjct: 333 YGHHPTEVAATLAAARSACPDRRLVMLYQPHRYSRT-RDLYEDFVAVLSDCEVLLLLDVY 391

Query: 420 PRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
              E+P        +   I   G    I   +  EA+    I +L   D+L+  G G+
Sbjct: 392 SAGEEPIAGADSRALTRSIRQRGAVEPIFVAD-AEALAPVLINILRDGDLLLTQGAGN 448


>gi|83949453|ref|ZP_00958186.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
 gi|83837352|gb|EAP76648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
          Length = 466

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 123/393 (31%), Gaps = 50/393 (12%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQR 139
            +A + +  P+   ++   F   FA++ + +   P  ++AVTG++GKS+ ++ +  +   
Sbjct: 87  IAAALAAGVPV--DNDIGLFFRSFAAQGFDEFDTPPRVVAVTGSNGKSTTSALIHHVLSE 144

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G +S   G                   + L                   SS+  +  R 
Sbjct: 145 AGRASQLAGNIGRGVLDIDPPEDGGVVVLEL-------------------SSYQTELAR- 184

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +      FTNL  DH+D H     YF AK RLF E  P  +       D      +  
Sbjct: 185 -ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSEGGPDRAVI---GVDEAEGRFLAN 240

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------DFDFLFPLPGEFQV 312
             + G     V        L         ++  +S   K       D   +  LPG    
Sbjct: 241 QLSVGPSDDRVIRISSGTKLTGPGWQVFARKGFLSEYRKGRQAGSIDLREIKGLPGAHNH 300

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA  A   C A+G+   ++         +P R + +   +    +    A   +S    
Sbjct: 301 QNACAAYAACRALGLAPRVIEAGFASFGGLPHRSQLIAEQNGVSFVNDSKATNVDSAARA 360

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L     I   R I           G  P +  +        I         +      ++
Sbjct: 361 LMAYGRI---RWICGGLQKEGGLAGLAPGLANVVKAY---VI-------GREAAAFALDL 407

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             G            A+  A+E     D +++A
Sbjct: 408 --GETETEICTTMERAVARAMEEAEPGDCVLLA 438


>gi|307564692|ref|ZP_07627222.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
 gi|307346620|gb|EFN91927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
          Length = 443

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 106/354 (29%), Gaps = 43/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++GK++  S +  I + +G      G                   + L  A 
Sbjct: 102 SKMICITGSNGKTTTTSLIFHIFKDAGYDVGLAGNIGK--------------SLALQVAE 147

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  +     +  +E SS  LD   +   +       N+  DH+D ++ +   +       
Sbjct: 148 SPHA-----YYVIELSSFQLD--NMYKFRANIAILLNITPDHLDRYEYKFENYANAKMRI 200

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   KE   I + DD     + K       + +   +                  +   
Sbjct: 201 IQNQTKEDSFIYWKDDPV---IKKELEKFDVKAVQYPFSELKETGSIGYIEEGMYTIEKP 257

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +          L G+  +YN+L A       GI    + + L     V  R E V   S 
Sbjct: 258 IPFNMEQEDLSLTGKHNIYNSLAAGIAANIGGIKKENIRKSLSDFKGVEHRLEKVCKVSG 317

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   ++    L+++ T       V+   G D+      I   +      I  
Sbjct: 318 VQYINDSKATNVDACWYALESMVT-----PTVLILGGRDKGNNYDAIKDLVKQKCRAIVY 372

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVV 464
           +  DN           ++               +  + +    E+    D +++
Sbjct: 373 LGADN----------KKLHDNFDNLGIITRDTHSMKDCVAACRELAKSGDTVLL 416


>gi|120555365|ref|YP_959716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
 gi|158513048|sp|A1U3G0|MURD_MARAV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120325214|gb|ABM19529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
          Length = 446

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 121/344 (35%), Gaps = 39/344 (11%)

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++V + V ++ + +G +    G   T               + L +  + L   
Sbjct: 115 TGSNGKTTVTTLVGEMARAAGRNVQVGGNIGTP-------------ALDLLEQGADL--- 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SS  L+    + +  +A +  N+  DH+D +  +     A  +  + +   
Sbjct: 159 ----YVLELSSFQLET--TEELGALAATVLNVSDDHMDRYPDK----MAYFQAKQRIYRG 208

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              AI+  DDA S  + +       R L  G+                  +T  +E    
Sbjct: 209 CKNAIVNLDDALSTPMARDT----LRFLCFGFNRVNPETFSTRDDDEGTWITWGLENLLL 264

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G   + N + A  L  A G+    +LE   +   +P R E V        I  
Sbjct: 265 ASELQLMGRHNISNVMAALALGYAAGLAMEPMLEVARRFRGLPHRCESVRNLDGVDYIND 324

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                  +    ++++    SG++I++ G  G +    +P+  +         ++     
Sbjct: 325 SKGTNVGATVAAIESLVP-ESGKVILIAGGDG-KGADFQPL-AEPVAACCRALVLI---- 377

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              D  KI   +   +P      +  EA+  A +     D +++
Sbjct: 378 -GRDAGKISRAVGASVPQ-HRATSLQEAVSLARQAAEPGDRVLL 419


>gi|253988592|ref|YP_003039948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780042|emb|CAQ83203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
           asymbiotica]
          Length = 423

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 124/397 (31%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L        ++  I +V +              +    I+A+TG++GKS
Sbjct: 53  ADLIVVSPGIALATAELQAAADAGIEIVGDIE--------LFCREATTPIIAITGSNGKS 104

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G      G                   + L         Q      +
Sbjct: 105 TVTSLVGEMAKAAGWQVGVGGNIGLP-------------ALEL-------LKQSCQLYVL 144

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +    + + A          +    +  
Sbjct: 145 ELSSFQLET--TYSLKAAAATVLNVTEDHMDRYPQGLSQYRAAKLRVYHQAKRCIVNVQD 202

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                   +  R  + G          +   L             +  +         L 
Sbjct: 203 TLTLPETGMDSRCVSVGVDCGDYQLDSENAFL------------KVHNQSLLAANEIKLT 250

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N LVA  L  A+GI     L  L     +  RF+ V  N+    I    A    
Sbjct: 251 GRHNYVNGLVALALADAVGIPREASLATLTVYPGLNHRFQLVHLNNGVRWINDSKATNVG 310

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G +     P+   +  D   +     D  R     +
Sbjct: 311 STEAALNGLNL--EGTLYLLLGGDG-KSADFSPLKPFLCGDKVRLYCFGRDGKR---LAQ 364

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +R EI              +AIR     L   D++++
Sbjct: 365 LRPEI------ATLTETMEQAIRDIAPRLVAGDMVLL 395


>gi|308235553|ref|ZP_07666290.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14018]
 gi|311114359|ref|YP_003985580.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14019]
 gi|310945853|gb|ADP38557.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis ATCC
           14019]
          Length = 503

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 53/175 (30%), Gaps = 16/175 (9%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NA  A    + +G+      +          RF+  G    G  +  DYAH  
Sbjct: 314 PGLHNARNACAAIIAAMLLGMSPKDAADGASSFRGASRRFDIRGC-VNGVTVVDDYAHHP 372

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++ +L+  R       I V        R +         AL LAD  IVT   P  E 
Sbjct: 373 TEIDALLRAARRRYPNASIRVLFQPHLFSRTRSFAHEFAS-ALSLADDVIVTGIFPAREK 431

Query: 425 PEK--------IRAEIIHG--IPGFIEKGNRIE-AIRTAIEMLNKQDVLVVAGKG 468
            E         I                 +  E A++ A       DVL   G G
Sbjct: 432 QEDFPDIHASTIVDVARKDDITSNIEAVEDMREGALKLA-SRAKNGDVLFTVGAG 485


>gi|94501895|ref|ZP_01308405.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
 gi|94425948|gb|EAT10946.1| UDP-N-acetylmuramate--alanine ligase [Oceanobacter sp. RED65]
          Length = 485

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 123/368 (33%), Gaps = 46/368 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A ++++          I +V   R+   L+      +G      +AV GT G
Sbjct: 79  ANVVVVSTAINVENPEIQYAQQNRIPIV---RRAEMLAELMRYRHG------IAVAGTHG 129

Query: 126 KSSVASFVQQI-CQRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           K++  S V  I  +     +F IG    ++  ++    +R                    
Sbjct: 130 KTTTTSLVASILAEGDKDPTFVIGGRLTSAGTNAQLGGSRYLVAEADE------------ 177

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                    S     H    ++ +    TN+  DH+D +             F   LP  
Sbjct: 178 ---------SDASFLH----LQPMVSIVTNIEADHMDTYGGDFNRVKKTFIEFLHNLPFY 224

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  +D   +E++                  +    K   I+    V    + KD  
Sbjct: 225 GLAVLCIEDETIREILPEVSRPVVTYGFSDSADYYAQEIKQEGIYTSFTVKRPGDNKDLQ 284

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS---RGGRI 358
               +PG   V NAL A  +    GI    ++  LEK   V  RF+  G          +
Sbjct: 285 IRLRMPGRHNVLNALSAIAVATDEGIADDAIIRALEKFQGVGRRFQICGEYPLQDDSVML 344

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVT 416
             DY H    + + +  IR      R+++VF      R +       +I  +  D  ++ 
Sbjct: 345 VDDYGHHPTEVAVTIDAIRKGWPEKRLLMVFQPHRYTRTRDLYDDFVQILSE-VDSLVLL 403

Query: 417 DDNPRSED 424
           D     ED
Sbjct: 404 DVYSAGED 411


>gi|326771694|ref|ZP_08230979.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505]
 gi|326637827|gb|EGE38728.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces viscosus C505]
          Length = 524

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFG-CGGDR 394
                 RFE  G  + G R+  DYAH    +E +L+  R +     GR++V+F      R
Sbjct: 356 FGGTGRRFEDRG-EADGVRVIDDYAHHPTEIEALLRTARGVAQERGGRVLVLFQPHLFSR 414

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAE-IIHGIPG--FIEKGNRIEA 448
            +      G+ AL LAD  +VTD  P  E   D   I  + +   +PG        R++A
Sbjct: 415 TRAFADRFGQ-ALALADAVVVTDVYPARETQADFPDITGDTVAQRVPGGTARFVAERLDA 473

Query: 449 IRTAIEMLNKQDVLVVAGKG 468
                ++    D+L+  G G
Sbjct: 474 AHAVADLARPGDLLLTVGAG 493


>gi|90962026|ref|YP_535942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius UCC118]
 gi|118595662|sp|Q1WT99|MURD_LACS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90821220|gb|ABD99859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           salivarius UCC118]
          Length = 458

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 20/263 (7%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+   HIDYH T++ Y NAKMR+       +   + + D+   +E+ +R+  
Sbjct: 181 HPKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQTEDDYFVVNW-DNEEWQELSQRSKA 239

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +G      ++      + + ++      K       +PG   V NAL A  + 
Sbjct: 240 KIVPFSRLGKSKDGAYVAGGYLFYKEDKIMPVDNIK-------VPGTHNVENALAAIAVA 292

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
              G  +  + E L     V  R ++V T +         A    + E  L         
Sbjct: 293 KIFGKSNEDIKEVLTTFSGVRHRTQYVTTLNGRKFYNDSKATNMEATEKALAGF-----N 347

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE-IIHGIPGFIE 441
             +V+   G DR      +   +   +  + +        E  + +       G+   I+
Sbjct: 348 NPVVLLAGGLDRGFTFEKLEPSLKNKVHAMIVF------GETADLMAKAGKEAGVEKIIK 401

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464
             + + A+  A ++ N+ DV+++
Sbjct: 402 TKDAVSAVPEAYKVSNEGDVILL 424


>gi|300741266|ref|ZP_07071287.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
 gi|300380451|gb|EFJ77013.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
          Length = 486

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 132/412 (32%), Gaps = 42/412 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S+A   +D    I +    L V +  + L+             ++AV GT GKS+ +
Sbjct: 83  VVISTAI-HEDNPELIAARAQNLRVLHRSEALAAAMG------SSQVVAVAGTHGKSTTS 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +  + G        T      +      T                     S   +
Sbjct: 136 SMIAVMLDKLGFHPSFAVGTVIAGYGSNARLGATGE------------------GSWFVA 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +      TN+  DH+D+++T +  + A    F   +      +   DD
Sbjct: 178 EADESDGSFVRYQPAIAVVTNVEPDHLDFYETPERVYEA-FNRFVASMAPGGVLVTCWDD 236

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---------NKQQVTISVEGKDFD 301
             ++ + +RA +AG  V++ G   +          H            +        + D
Sbjct: 237 EGARALAERARDAGIEVVTYGQSTEADLRVSRITSHGSESSATLRWSFECASKHYEGEQD 296

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     NA  A    +  G         L        RF   G +  G +++ D
Sbjct: 297 AQLRVPGIHNQLNAAAAFITALLAGAQPEDAAAALYGFGGADRRFTLRG-DVAGIKVFDD 355

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAH    +   L+  RT+  G  + V        R Q       +     AD + V D  
Sbjct: 356 YAHHPTEVFRALETGRTVADGHNLYVVFQPHLFSRTQEFAADFAQALSK-ADRSYVLDIY 414

Query: 420 PRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P  E P E + +E+I   G        +   AI          D+++  G G
Sbjct: 415 PARELPIEGVTSELITGAGFSEVHYASDAAAAIEDIAMCAVPGDIIMTIGAG 466


>gi|307298498|ref|ZP_07578301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915663|gb|EFN46047.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 441

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 133/362 (36%), Gaps = 51/362 (14%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L+ K    ++ VTGT+GKS+  + ++ I        FQ G                    
Sbjct: 103 LWSKPRGTVIGVTGTNGKSTTVTMLRHIISGKNRKVFQGGNLG----------------- 145

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                L+ ++ +   +  +E SS  L     + ++    +  NLG DH+DYH++   YF 
Sbjct: 146 ---YPLAGVAEEVYDYYVLEVSSFQLKWFAEERVRFHLSAVINLGEDHLDYHRSIDDYFK 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K+RL +    +    +  A     KE++K +       L  G+        +V  I  +
Sbjct: 203 SKLRLAKM--TEGITVVPKAVADCQKELLKGSKLRPFVALGEGFDSFDREHLRVRGIEFR 260

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                           P  G     N LV   +   IG+ +  V + L+    +  R + 
Sbjct: 261 TSDL------------PFTGLHNYENVLVVLLISQLIGLSAEDVFQELKSYTFLSHRLQL 308

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V             A  ++++      +R+    + I++ G   ++D+    ++ +    
Sbjct: 309 VRELEGVKYYDDSKATNAHAVSA---ALRSFEPSKTILILGGR-EKDETYSELI-EQLGQ 363

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-- 464
           L  + ++           KI +  +   GIP      N  +A++    +  K D +V+  
Sbjct: 364 LKHVVMLGS-------SMKILSAKLQMRGIP-VSGAANMADAVKICRGLAAKGDNVVLSP 415

Query: 465 AG 466
           AG
Sbjct: 416 AG 417


>gi|291615173|ref|YP_003525330.1| UDP-N-acetylmuramate/alanine ligase [Sideroxydans lithotrophicus
           ES-1]
 gi|291585285|gb|ADE12943.1| UDP-N-acetylmuramate/alanine ligase [Sideroxydans lithotrophicus
           ES-1]
          Length = 486

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 139/452 (30%), Gaps = 73/452 (16%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKH 113
            GH      +   A+A+VVS+A    +          I +V   R   L+       G  
Sbjct: 55  HGHD-ANNLLD--ADAVVVSTAVKADNPEMMAAREQHIPIVP--RAVMLAELMRLRQG-- 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S V  +  + G     +     ++S   + RL T   I     
Sbjct: 108 ----IAVAGTHGKTTTTSLVTSVLAKGGYDPTFV-IGGRLNSSGANARLGTGEFIVAEAD 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S  S                       +  I    TN+  DH++ +             
Sbjct: 163 ESDASFLY--------------------LTPILAVVTNIDADHMETYGHDFGKLKQAFVD 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--------AI 285
           F E LP    AI+ ADD   ++++ R                     +            
Sbjct: 203 FVERLPFYGRAILCADDENVRDILPRISKPITTYGLSEDVQIRAVDVRHEGGRMRFTAQC 262

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            + ++     +  D +    L G   V NAL A  + + +G+  + ++  L +   V  R
Sbjct: 263 RHDEKCLFEGKPIDLEVTLNLAGMHNVLNALAAIAVGLEVGVAPSAIVAALAEFEGVGRR 322

Query: 346 FEFVGTNSRGGRI------------------YVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            +  G       +                    DY H    ++  L  +R    G+  ++
Sbjct: 323 MQRYGEIPLPNPLPQAGEGANAAAAGGSFTLIDDYGHHPVEMKATLAAVRGAFPGKR-LL 381

Query: 388 FGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
                 R    R +       L   D   + +     E P  I A     +   +    +
Sbjct: 382 LAFQPHRFTRTRDLFEDFVKVLGGVDALALAEVYAAGEQP--IVAADGRALMHALRVAGQ 439

Query: 446 IEAI---------RTAIEMLNKQDVLVVAGKG 468
            EA+         +T ++M    DV++  G G
Sbjct: 440 NEAVFVENIADMPQTIMQMAQDGDVVLTMGAG 471


>gi|188582368|ref|YP_001925813.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium populi
           BJ001]
 gi|229620045|sp|B1ZGP5|MURC_METPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|179345866|gb|ACB81278.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium populi
           BJ001]
          Length = 468

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 140/450 (31%), Gaps = 64/450 (14%)

Query: 38  RHIQAGWI--FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           R +    I  FV        GH    + +   A  +VVS+A    +          + VV
Sbjct: 46  RRLSENGIRTFV--------GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVV 94

Query: 96  DNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R+   L+           ++ +AV GT GK++  S V  +     L    I     I
Sbjct: 95  ---RRAEMLAELMRF------KSCVAVAGTHGKTTTTSLVATLLDAGNLDPTVI-NGGII 144

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +++  + R+     + +    S                          +       TN+ 
Sbjct: 145 NAYGTNARMGAGDWMVVEADESD--------------------GTFLKLPADVAIVTNID 184

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            +H+D+  +  A  +A  R F + +P    A++  D    ++++    +          Q
Sbjct: 185 PEHLDHFGSFDAIKDA-FRRFIDNIPFYGFAVMCIDHPIVQDLVGHIEDRRIITYGENPQ 243

Query: 274 GKFIHLK------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +       +       +        +  D + P+PG     NA  A  +   +G+
Sbjct: 244 ADVRLIDIDLKGGQSRFRVMIRDRRPGFRLEMQDLVLPMPGRHNALNATAALAVAHELGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               + + L     V  RF   G    G  I+ DY H    +  +L+  R+ T G++I V
Sbjct: 304 SEDAIRKALAGFGGVKRRFTRTG-EWNGAAIFDDYGHHPVEIAAVLRAARSSTDGKVIAV 362

Query: 388 FGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPG 438
                 R    + +          AD  IV       E P +       I      G   
Sbjct: 363 V--QPHRYTRLQSLFEDFCTCFNDADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRD 420

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +      +  R         D +V  G G
Sbjct: 421 AVALERPEDLARLVSGRAEPNDYVVCLGAG 450


>gi|6979688|gb|AAF34599.1| Irb1 [Vibrio cholerae]
          Length = 48

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 40 IQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
          I++G  FVAI G+ EDG  FI +AIAQGA  ++  +     + 
Sbjct: 1  IKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNG 43


>gi|148549591|ref|YP_001269693.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
 gi|166224717|sp|A5W8P9|MURC_PSEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148513649|gb|ABQ80509.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida F1]
          Length = 482

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 76/447 (17%), Positives = 141/447 (31%), Gaps = 75/447 (16%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           IFV        GH     A    A+ +VVSSA +  +          I VV    + L+ 
Sbjct: 64  IFV--------GHR-AENAAT--ADVLVVSSAINPANPEVATALERRIPVVPRA-EMLAE 111

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIG---PTSTISSFAQDN 160
                +G      +AV GT GK++  S +  +    G   +F IG     +  ++    +
Sbjct: 112 LMRYRHG------VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQLGTS 165

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           R                             S     H    ++ +    TN+  DH+  +
Sbjct: 166 RYLIAEADE---------------------SDASFLH----LQPMVAVVTNIDADHMATY 200

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
           +            F   LP    A++  DD   +E++ +             +     + 
Sbjct: 201 EGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVREILPQVKRPTV-TYGFSEEADIRAIN 259

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                       +  + +  +    +PG   V NAL    +    GI    +++ L    
Sbjct: 260 VRQQGMQTHFTVLRRDREPLEVSVNMPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQ 319

Query: 341 VVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            V  RF+  G          +  DY H    +  ++K +R     R +V+        + 
Sbjct: 320 GVGRRFQVYGELPVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSRRLVIVYQPHRYSRT 379

Query: 398 KR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEA 448
           +       ++  D A++ ++ +  P  E+P       ++   I   G    I        
Sbjct: 380 RDLYDDFVQVLGD-ANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIY------- 431

Query: 449 IRTAIEML-------NKQDVLVVAGKG 468
           I   +E+           D+L+  G G
Sbjct: 432 IERGVELAPLVKPLLRAGDILICQGAG 458


>gi|330828043|ref|YP_004390995.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
 gi|328803179|gb|AEB48378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
          Length = 427

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 114/333 (34%), Gaps = 43/333 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + +A+ + A  IV S   +L        +   + +V +              +    ++A
Sbjct: 50  LDEALLKQAHMIVASPGIALATPELKAAAECGVQIVGDIE--------LFVRETQTPVIA 101

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GKS+V + V ++   +GL+    G   T               + L         
Sbjct: 102 ITGSNGKSTVTTLVGEMIAEAGLNVGVGGNIGTP-------------ALEL-------LK 141

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
           Q +    +E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + +    
Sbjct: 142 QPMDLCVLELSSFQLET--THSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQHS-- 197

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                       +       A             G   +    C +  +  +T+  E   
Sbjct: 198 -----------KHILVNRDDAQTLPDVGQVWQSFGLDCNGYGRCLLDGRHWLTLHGEPLL 246

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 + G     NAL A  LC A+GI  A  L  L +   +P R  FV   +    I 
Sbjct: 247 AVDEMKIVGAHNQANALAAMALCDAVGIPRAAQLTVLRRFEGLPHRARFVREVNGVRWIN 306

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              A    +    +  +R    GR++++ G  G
Sbjct: 307 DSKATNVGATLAAVAGVRESVKGRLLLLAGGQG 339


>gi|307299267|ref|ZP_07579068.1| FolC bifunctional protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915063|gb|EFN45449.1| FolC bifunctional protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 439

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRP 400
            PGRFE    +     + +D AH  ++  ++ + +     G R+ ++FG   D+D     
Sbjct: 299 WPGRFEV--FSQDSKSVILDGAHNPDAARVLRRTVEKYFPGERLTLLFGSLDDKDYETNI 356

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
              K+  ++AD  +V    N RS  PEK+                   A+  A+E+    
Sbjct: 357 ---KVLSEIADSVVVCRVPNHRSIHPEKVADVWRKYCSSVQFVEEHEIAMNKALEIS--- 410

Query: 460 DVLVVAG 466
           D L+V G
Sbjct: 411 DSLLVCG 417


>gi|238918679|ref|YP_002932193.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella ictaluri
           93-146]
 gi|238868247|gb|ACR67958.1| UDP-N-acetylmuramate--alanine ligase, putative [Edwardsiella
           ictaluri 93-146]
          Length = 491

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 135/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A +  +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 83  ASVVVVSTAIAADNPEIIAAREARIPVI-----RRAEMLAELMRFRHG------IAIAGT 131

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 132 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +             F   LP    
Sbjct: 189 ------------------LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   + C            +       
Sbjct: 231 AVLCIDDPVIRELLPRVGRQVTTYGFSQDADVRIEEYRQCG-AQGTFFLCRQDRPRLAVT 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  AA +    GID   +L  L++      RF+F+G  S          
Sbjct: 290 LNAPGRHNALNAAAAAAVASEEGIDDEAILRALDRFQGTGRRFDFLGEFSLQHVNNRPGR 349

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     R +V+        R +        +     D+ 
Sbjct: 350 VMLVDDYGHHPTEVDATIKAARAGWPDRRLVMVFQPHRFTRTRDLYDDFANVLSQ-VDVL 408

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D  P  E P        +   I   G    +   +     +T  + L + D+++  G
Sbjct: 409 LMLDVYPAGEHPIPGADSRSLCRSIRGRGKLDPVLVSDPATLAQTLAQFLQEGDLILTQG 468

Query: 467 KGH 469
            G+
Sbjct: 469 AGN 471


>gi|223986480|ref|ZP_03636481.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
 gi|223961542|gb|EEF66053.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
          Length = 535

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 116/372 (31%), Gaps = 22/372 (5%)

Query: 98  TRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
            +K     A  +   H     + +TG+ GK+S  + +QQI                  S 
Sbjct: 171 IKKHYMKLAKEILKSHDRLIKIGITGSYGKTSSKNILQQILSE------------KFYSL 218

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
                  TP  I +        +  V    + A   G  +  +D ++   G  T++G  H
Sbjct: 219 PTPASFNTPMGITITIREQLKPTHEVFICEMGADHVGDIEQLMDFVQPQIGLVTSIGPQH 278

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ++   +Q+     KM++ E+L       +   ++      +K  +        +  +   
Sbjct: 279 LNTFGSQENIVTEKMKMIEKLPVTGFGVLNKDNELIRNYYIK--NKCPIAWYGIEQEDVD 336

Query: 277 IHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                +          I      D  F   L GE  + N L A  +   +G+    +   
Sbjct: 337 YRAVNISFGPQGSSFDIHTREGADIPFKTRLLGEHNIANILAAVAVGRHLGVSWEQLQSA 396

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIV--VFGCGG 392
           + ++  V  R E    N  G     D +        M L+ ++T+   R IV       G
Sbjct: 397 VAQVRYVEHRLEVKKIN--GYTFIDDAFNSNPVGSAMSLQVLKTMPGTRFIVTPGMIDLG 454

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
            R        G    D AD  I+     ++E   +        +          EA    
Sbjct: 455 PRQHEINKQFGMKMKDCADEVILVGKR-QTEPIVEGLQACGFDMAHVHIVATVKEAFGLV 513

Query: 453 IEMLNKQDVLVV 464
            +     D +++
Sbjct: 514 YQKAAYTDTILL 525


>gi|89067941|ref|ZP_01155385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046539|gb|EAR52595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
          Length = 464

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 123/415 (29%), Gaps = 63/415 (15%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
            A++VS      Y              + V ++   F        +  H     ++AVTG
Sbjct: 68  AALIVSPGIPHLYPRPHPVIAAAWEAGVPVDNDIGLFFRSLGQSDWDSHDVAPKVVAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ A+ +  + +  G  S   G                   + L            
Sbjct: 128 SNGKSTTAALIHHVLREGGRESQLAGNIGRGVLDIDPPGDGGVVVLEL------------ 175

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                  SS+  +  R   +      FTNL  DH+D H     YF AK RLF E  P   
Sbjct: 176 -------SSYQTELAR--SLTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRC 226

Query: 243 PAIIYADDAYS---KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
              +   +      +    RA +   R+ +     +   +       ++ +    V   D
Sbjct: 227 IVGVDELEGRFLANQLAESRADDRVIRISADRKLAEGWSVTARKGYLSELRKGRQVGSID 286

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  LPG     NA  A  +   +G+    +         +P R + +        + 
Sbjct: 287 LREIKGLPGAHNHQNACAAYAVARTLGLGPRQIEAAFASYPGLPHRSQLIAERGGVRFVN 346

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVV-------FGCGGDRDQG--KRPIMGKIALDLA 410
              A   +S    L     I   R I          G   D   G  K  ++G+ A   A
Sbjct: 347 DSKATNVDSAAKALAAFGRI---RWICGGLQKEGGLGGLLDAAGGVVKAYVIGREAEAFA 403

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                                 + GI          +A+  +       DV+++A
Sbjct: 404 MS--------------------LTGID-AEVCTTMADAVARSAAEAEPGDVVLLA 437


>gi|145627891|ref|ZP_01783692.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145639341|ref|ZP_01794947.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|144979666|gb|EDJ89325.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145271644|gb|EDK11555.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|309751215|gb|ADO81199.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2866]
          Length = 475

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 120/376 (31%), Gaps = 41/376 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA    +    A+ +   P++      + L+      +G   
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG--- 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I       +                +           A 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIAE 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  S     H+    S                   TN+  DH+D ++       A    F
Sbjct: 174 ADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +                 I   +         + I 
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHY-IVIC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   R
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAIAKEEGIANEAILEALADFQGAGRRFDQLGEFIR 335

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDL 409
                R+  DY H    +++ +K  R     + IV+        + +       ++    
Sbjct: 336 PNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ- 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|261367207|ref|ZP_05980090.1| UDP-N-acetylmuramate--alanine ligase [Subdoligranulum variabile DSM
           15176]
 gi|282570805|gb|EFB76340.1| UDP-N-acetylmuramate--alanine ligase [Subdoligranulum variabile DSM
           15176]
          Length = 456

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 81/266 (30%), Gaps = 9/266 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +    G   N+  DH++Y+ T      A  +            +   DD  + +V+   
Sbjct: 180 HLTCAVGVILNIDNDHLEYYGTMGQLKLAFQKFALL----SRTVVFNMDDHNTVDVVNSI 235

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                                       +   + +          +PG   +YNAL    
Sbjct: 236 DRPVLSFGITEDARFRAVNVAEYKPGFYEFDVLELGENFAHIRLGVPGYHNIYNALAMCC 295

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G+     +   E  H    RFE  G    G  I  DYAH    LE  LK  + + 
Sbjct: 296 CVRPLGLKPEDAVRAAEAFHGTGRRFEIKG-ECNGAVIVDDYAHHPTELEATLKTAKGLG 354

Query: 381 SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DPEKIRAEIIHGIP 437
             R+I V       R +       K+  + A+  ++       E  D      ++   IP
Sbjct: 355 YQRVIAVHQPFTYSRTKMLMDDFVKVLGE-ANQVVLLPIMGGREADDGTVSSEQLAAKIP 413

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLV 463
           G +       A     +   K D++V
Sbjct: 414 GSVVVDGLEGAADWVKQNAGKGDLVV 439


>gi|262376991|ref|ZP_06070217.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
 gi|262308029|gb|EEY89166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
          Length = 448

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 121/397 (30%), Gaps = 48/397 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S     +        N  I VV            R   K    I+A+TG++ KS+V 
Sbjct: 69  IVISPGLDPKLPEIQAAINKGIPVVSEI-----QILRRATDKP---IVAITGSNAKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  +   +G      G     +         T     L                +E S
Sbjct: 121 TLIGLMAADAGKKVAIGGNLGRPALDL------TKDDPEL--------------YILELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +        N+  DH+D H     Y  AK      +       +   DD
Sbjct: 161 SFQLET--TSNLAAEVAVVLNMSEDHLDRHGDMMGYHTAK----HRIFQGVKKVVYNRDD 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           + ++ ++          L+     ++  LK         +    +      ++    G  
Sbjct: 215 SLTRPLVPDVTPIQSFGLNAPDMNQYGILKDTDGSIWLARGRERLLKSTEMYMQ---GTH 271

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    L  AIG+    +L  L+    +  R EFV                  +  
Sbjct: 272 NVANALACLALGEAIGLPLESMLNTLKTFKGLEHRCEFVKEVQGVRYYNDSKGTNIGATL 331

Query: 371 MILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             L           G++ ++ G  G     K   + +     A +A++       ED   
Sbjct: 332 AALDGLGMAIEAQGGKVAIILGGQGKGQDFK--ALRESLSKYAKVAVLI-----GEDRPV 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A I  G    I   +  +A+    +     DV+++
Sbjct: 385 IEAAI-AGTIELIHADSLQQAVEICQKHTQAHDVVLL 420


>gi|167627721|ref|YP_001678221.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597722|gb|ABZ87720.1| Mur ligase family protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 561

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 123/377 (32%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WSKVYDIPAVIVTGTNGKTTTVRLTDYICRTAGK---LTGYTSTDWVKVNDELIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH--IDYHQTQQAY 226
                   L+++ V    +E++  GL +  L    + A + TN+  DH   D  +T    
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
             AK  +F  +       I   +    ++  K +                 +L K     
Sbjct: 283 AEAKAIVFRTMGKDSHAVINLDNFYMKQQFDKLSCAKIIVTQDPDQHDMDYYLSKADYAC 342

Query: 287 NKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             +    +   K                    +  + NA++A  L   +GID   + + L
Sbjct: 343 VVENGIFTWIDKKSKKQILPVVDAPLTVKGFAKHNIENAMIAIALSFKLGIDFDYIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  I+     G+  ++ G  GD
Sbjct: 403 GSYKNDPKVNRGRANIFEFDNKVAVLDYAHNEAGMEALLNMIKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   I     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIILKHGIDFVVIKETEKYLRGAKPLELPTLIRDDLERKGFDISKTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            +  ++  ++ML   D+
Sbjct: 523 ELIGVKYILDMLEDNDI 539


>gi|171462985|ref|YP_001797098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192523|gb|ACB43484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 540

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 126/390 (32%), Gaps = 45/390 (11%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            LS  A      +   +LA+TGT+GK++ A+   Q+C+R+G      G  S  +     N
Sbjct: 134 ALSRMAQAQESSYEAAVLAITGTNGKTTTAALTGQLCERAGKKVAVAGNISPAALEKLMN 193

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            L     I                  +E SS  L       +   A +  N+ +DH+D+H
Sbjct: 194 CLDLADQI----------VDMSDVWVLELSSFQLVY--THTLNATAATVLNITQDHLDWH 241

Query: 221 QTQQAYFNAKMRLF----EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
              QAY  AK R+F      +L ++   ++       K           R    G  G  
Sbjct: 242 GDMQAYAEAKSRIFGADTVCILNRDDSLVMGLLSDEQKVDKSIVTFGSNRPDEQGAFGIE 301

Query: 277 IHLKKVCAIHNKQQVT----------------------ISVEGKDFDFLFPLPGEFQVYN 314
             L+                                  + ++         + G     N
Sbjct: 302 HDLRAGGIDWLVWAEVDEDVEPKSKRRRKSAVVEDDEPLRLKRLIPADALRIRGRHNALN 361

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  L  A+ +   ++L  L   H  P R + +        +         +    L 
Sbjct: 362 ALAALALARAVNLPMNVLLHGLRDYHGEPHRVQSIAIVRDVEYVDDSKGTNVGATVAALN 421

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            +     G+ I +   G  + Q   P+  + AL     A V       +D   I   +  
Sbjct: 422 GLGNNELGKRIWLIAGGDGKGQDFSPLR-EPALRFVKGAFVI-----GKDGVAIGEALGA 475

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           GIP     G+ + A++         D++++
Sbjct: 476 GIP-ITNCGDLVSAVQAVAGQAISGDIVLL 504


>gi|85058335|ref|YP_454037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Sodalis glossinidius str.
           'morsitans']
 gi|84778855|dbj|BAE73632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 455

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 105/362 (29%), Gaps = 44/362 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +       +FA   RL       +    
Sbjct: 103 RWVIAVAGTHGKTTTAGMVAWILEEFGYQPGFV-IGGVPGNFAVSARLGDGPFFVVEADE 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +                 + +            N+  DH D     +A         
Sbjct: 162 YDCAFFD-------------KRSKFVHYCPRTLILNNMEFDHADIFDDLKAIQ-----KQ 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L +  P         +   +K     GC   +     + +   K  A          
Sbjct: 204 FHHLIRLVPGKGKIILPDNDVNLKHTVAMGCWSETEYTGEEGVWRAKKVAPDASGFEVFL 263

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                    + L GE  ++NAL+A      +G+  A     L+       R E  G    
Sbjct: 264 HYEPVGTVNWQLVGEHNMHNALMAVAAVRHVGVQPADACRALDGFINARRRLELKG-TVN 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC------GGDRDQGKRPIMGKIA 406
           G  +Y D+AH   ++   L  +R+   G  RII V          G       P +G+  
Sbjct: 323 GVTMYDDFAHHPTAILATLAALRSKVGGTARIIAVLEPRSNTMKMGLSKNELAPSLGR-- 380

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              AD   +         P+ I  ++       +       +    +   ++     D +
Sbjct: 381 ---ADEVFLYQ-------PQHIPWQVSEVAEACVQPAHCSADVDTLVEMVVKTAQPGDYI 430

Query: 463 VV 464
           +V
Sbjct: 431 LV 432


>gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|60390532|sp|Q7V0A5|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 117/391 (29%), Gaps = 44/391 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVVS A      +        I+V+                    N + +TGT+GK++V 
Sbjct: 83  IVVSPAIPFDHKTIIKLKERGIVVI-------GEINIAWESLKNINWIGITGTNGKTTVT 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I + + L +   G   T                 L +      S+ +  +  E S
Sbjct: 136 HLLSHILRENNLFAPFAGNIGTP----------------LCEIAYSTKSKNIDWIVAELS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  ++      IK   G +T    DH+D H+T   YF  K  L ++   +          
Sbjct: 180 SFQIEI-ATHCIKPKIGIWTTFTPDHLDRHKTLDNYFKIKNSLLKQSEFRIYNYDDQYLK 238

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K ++          +S         +     I  +++  +S++              
Sbjct: 239 ENFKSLLNGIWITTNPNVSDSDH-CDYWINNENFIVERREKLLSLKNFKLKGNHNT---- 293

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L+A      IG+ +  +   L     +P R E +        I    A   +S  
Sbjct: 294 --QNLLLAVAAARKIGLSTERIKNALLSYEQLPHRMETIFQRDELEIINDSKATNFDSSV 351

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +  I+         +   GG    G      KI    A    +       E  + ++ 
Sbjct: 352 AGINAIKGSP------IIISGGRLKNGDSIEWVKIINKKAKAVFL-----FGESSQTLKK 400

Query: 431 EIIHG--IPGFIEKGNRIEAIRTAIEMLNKQ 459
            I+ G      +   +  E I  A   +   
Sbjct: 401 LILEGGFKNDILTFNDLSEVINYAYSYIKNN 431


>gi|90418193|ref|ZP_01226105.1| UDP-N-acetylmuramate-alanine ligase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337865|gb|EAS51516.1| UDP-N-acetylmuramate-alanine ligase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 475

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 90/283 (31%), Gaps = 21/283 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ T      A    F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGTFDKVREA-FCAFVENVPFYGFGVMCLDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-------PLPGEFQVYN 314
           +          Q      + V     K    IS+  +             P+PG   V N
Sbjct: 232 DRRIITYGENLQADV-RFENVSFTAGKSHFDISIRDRVKGTTERIDGLVLPMPGRHNVSN 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A  A  +   + I +  + + L     V  RF   G       IY DY H    +   L 
Sbjct: 291 ATAAIAVAHRLNISADAIRKGLAGFGGVKRRFTLTGVVGE-VAIYDDYGHHPVEIRAALS 349

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP-----EK 427
             R+  SGR+I V      R    + +    A     AD  I+       E+P      +
Sbjct: 350 AARSSASGRVIAVV--QPHRYSRLQALFADFAACFNDADTVIIAPVYAAGEEPIDFVSSE 407

Query: 428 IRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I  E +   G           E       +    D++V  G G
Sbjct: 408 ILVERLKLGGHRDARLIDGPEELAPLIHNLAEPGDMVVCLGAG 450


>gi|255320976|ref|ZP_05362149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262379934|ref|ZP_06073089.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
 gi|255301940|gb|EET81184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262298128|gb|EEY86042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
          Length = 448

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 128/390 (32%), Gaps = 46/390 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A  L +    I    P+  V +          R        I+A+TG++ KS+V + +  
Sbjct: 76  APQLPEIQQAIAKGIPV--VGDI-----QLLRRATEVP---IVAITGSNAKSTVTTLIGL 125

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + + +G      G                   + L K    L       + +E SS  L+
Sbjct: 126 MAKEAGKKVAVGGNLGRP-------------ALDLLKDQPEL-------IILELSSFQLE 165

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              L  +        N+  DH+D H     Y  AK      +       +   DDA S+ 
Sbjct: 166 TTSL--LNAEVAVVLNMSEDHLDRHGDMLGYHAAK----HRIFQGVKKVVFNRDDALSRP 219

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++  A       L+     ++  L+         +    +      ++    G   + NA
Sbjct: 220 LVPDAVPVQSFGLNAPDMNQYGVLRDTDGTLWLARGRERLLKSTEMYIQ---GTHNIANA 276

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    L  AIG+    +LE L+    +  R E+V T +              +    ++ 
Sbjct: 277 LACLALGEAIGLPLNSMLETLKSFKGLAHRCEYVDTVNNVRYYNDSKGTNIGATLAAIEG 336

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +    + R   V    G + +G+     + A        ++       ED  KI   I  
Sbjct: 337 LGAAIAPRKGKVVVILGGQGKGQDFKALRAAVQQYVKTVVLI-----GEDALKIEQSI-E 390

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           G    ++     EA++      + +DV+++
Sbjct: 391 GSTEILKAATLQEAVQLCHAKADAEDVVLL 420


>gi|189347969|ref|YP_001944498.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium limicola DSM
           245]
 gi|229486479|sp|B3EIK7|MURC_CHLL2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189342116|gb|ACD91519.1| UDP-N-acetylmuramate/alanine ligase [Chlorobium limicola DSM 245]
          Length = 466

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 135/418 (32%), Gaps = 51/418 (12%)

Query: 67  GAEAIVVS---SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G + +V S         + SA  ++  P++  D   + L       YG      + ++GT
Sbjct: 65  GCDVVVYSSAVRKDENVEISAAEKAGIPVIKRD---EMLGELMRYKYG------ICISGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  +   SG S   +     +S +   +                  +    
Sbjct: 116 HGKTTTTAMIATMLMESGESPTVM--IGGVSDYLGGS------------------TVVGE 155

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +   S   D+  L  +        +L  +H+D + T +   NA +   +++      
Sbjct: 156 GKYMVIESDEYDRAFLK-LTPTIALVNSLESEHMDTYGTLEELKNAFIAFADKVPFYGRV 214

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFD- 301
                      E+ K       R  + G +    +    +    N    TI+  G  ++ 
Sbjct: 215 ICCV----DWPEIRKIIPMLNRRYTTFGIEEHADVMASDIVMEKNHTVFTITAFGSRYEG 270

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NAL A    I + I    ++  L     +  RF+    N RG  I  D
Sbjct: 271 VRLHVPGRHNVLNALAAFSAGIELEIAPEKLIAGLGCYSGMRRRFQIRYDNGRGLMIVDD 330

Query: 362 YAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAH  + ++  +   +      RII VF      R        G      AD  I+ +  
Sbjct: 331 YAHHPSEVKATVSAAKNGWADSRIIAVFQPHLFSRTLEFADEYGWALSR-ADSVIIAEVY 389

Query: 420 PRSEDPEK--------IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P  E  E         +   +   G         R     +  E  +  ++L+  G G
Sbjct: 390 PSREKAENFSGVNGNLVAEAVRRAGGKHVEYIEGRETLSGSLREHCSDGNMLLFMGAG 447


>gi|254480487|ref|ZP_05093734.1| FolC bifunctional protein [marine gamma proteobacterium HTCC2148]
 gi|214039070|gb|EEB79730.1| FolC bifunctional protein [marine gamma proteobacterium HTCC2148]
          Length = 431

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 9/141 (6%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVF 388
              L+      + PGR +       G    +D AH   +++ +L+NI  +  +G++I +F
Sbjct: 273 EDQLQRAIDGSIRPGRLQR--MELGGFHYLLDVAHNPAAIDKLLENIAASPCNGKVIALF 330

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKG-NR 445
               D+       M +      D   + +  DNPR+    +I   +       I    N 
Sbjct: 331 SAMKDKAID---EMLEACSGHFDAWFLGEQPDNPRAMPTAQIAELLREQGQEAISISKNL 387

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A R A  ++N +D+LVV G
Sbjct: 388 RQAFRRAQTVMNGEDLLVVFG 408


>gi|90416334|ref|ZP_01224266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
 gi|90332059|gb|EAS47273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
          Length = 450

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 132/394 (33%), Gaps = 46/394 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS   SL++ +        + ++ +   FL              ++ +TG++GKS+V 
Sbjct: 74  VVVSPGISLEEPALVAAQQQKVKLLGDVELFL--------EHAKAPVVLITGSNGKSTVT 125

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             V ++ Q SGL     G   T      D+                          +E S
Sbjct: 126 KLVGEMAQASGLKVGVGGNLGTPMLDLLDDEN--------------------QLYVIELS 165

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+   +   +    +  N+  DH+D +   Q Y  AK R+F          I    D
Sbjct: 166 SFQLEL--VTDTRGAISAILNISPDHMDRYADLQQYHAAKHRIFRGASQ----VIFNRQD 219

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A +  ++        ++ + G     +    +     +  +   ++         L G  
Sbjct: 220 ALTNPLLS----VAVKLCNFGLNRPDLANFGLLDEEGETWLAYGLKPLMRSAELALKGRH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NAL A  L  A G+D A +L  L +   +  R E+V T      I         +  
Sbjct: 276 NIANALAALALGQAAGLDMAAMLTTLTRFTGLSHRCEYVATVDGVTYIDDSKGTNIGATV 335

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L          +I++ G  G     K     ++   L     +       ED + I A
Sbjct: 336 AALNGFGEDDRANLILIAGGQG-----KGQNFTELKAPLGKFVKLLA--LFGEDAQSI-A 387

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E + G        +   A+  A  +    D++++
Sbjct: 388 ETLSGTTQIETLASLQAAVDCARAVAQPGDIVLL 421


>gi|258542971|ref|YP_003188404.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256634049|dbj|BAI00025.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637109|dbj|BAI03078.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640161|dbj|BAI06123.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643218|dbj|BAI09173.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256646273|dbj|BAI12221.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256649326|dbj|BAI15267.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256652312|dbj|BAI18246.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256655370|dbj|BAI21297.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 477

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 91/282 (32%), Gaps = 19/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  +    TN+  +H+D+  + +A   A    F   +P    A++  D    ++++ R  
Sbjct: 174 LPSVISVVTNMDPEHLDHWGSPEAMEAAY-DQFVSNVPFYGFAVLCIDHPAVQQMIPRLS 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVC------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          Q      K +                     K   F  P+ G   V NA
Sbjct: 233 DHRIVTYGFSPQADVRAEKLITDKLGATFEVTLTDRVSRRTRKAGPFRLPMLGSHNVQNA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +   + I   ++   L     V  RF   G  + G  +  DY H    +  +LK 
Sbjct: 293 LAAIAVATEMDISDDVIRSGLASFRGVKRRFTRTG-EAGGITVIDDYGHHPVEIAAVLKA 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R   +  +I V      R    + +       +  AD  IV+D     EDP      +K
Sbjct: 352 ARQAGANHVIAV--MQPHRYSRLKILFSDFCACMNDADTVIVSDVYAAGEDPLPDASRDK 409

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +   +   G    +   +          +    D +V  G G
Sbjct: 410 LIEGLRERGHRSVVPLSSPDHLAEMINAIAKPGDYVVCLGAG 451


>gi|229490346|ref|ZP_04384187.1| UDP-N-acetylmuramate--alanine ligase [Rhodococcus erythropolis
           SK121]
 gi|229322636|gb|EEN88416.1| UDP-N-acetylmuramate--alanine ligase [Rhodococcus erythropolis
           SK121]
          Length = 502

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 138/438 (31%), Gaps = 41/438 (9%)

Query: 56  GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRL 109
           GH     A+     G   +V + A   +D    + +     P+++        ++ AS +
Sbjct: 59  GHD--ADALDLLPGGPTVVVTTHAAIPKDNPELVEAARRGIPVILRP------AVLASLM 110

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G        V+GT GK+S  S +    Q  G           ++    +    +     
Sbjct: 111 QGN---RTFLVSGTHGKTSTTSMLVVALQHCGFD-PSFAVGGELNEAGTNAHHGSGDVFV 166

Query: 170 LAKALSYL---SSQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                S            V     +  LD    ++    +   F +  R           
Sbjct: 167 AEADESDGSLLQYDPNVIVVTNIEADHLDYFGSVEAYVKVFDDFVDKLRPGGLLIACLDD 226

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             +A +     +  +    ++    A ++EV           + VG +    H   V   
Sbjct: 227 PGSADLAKRIVVSGRSDIRVLGYGSADAQEVEAGTAFEPVDGVEVGVRLLGFHAHDV--- 283

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
               Q  ++ E         +PG     NAL A       G ++  ++E L     V  R
Sbjct: 284 GGVLQFHLAGESAARTVRMAVPGRHMALNALAALLAARDAGAETEEIVEGLAGFGGVHRR 343

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS------------GRIIVVFGCGGD 393
           F+F G    G R++ DYAH    +  +L     +              GR+IVVF     
Sbjct: 344 FQFTGRER-GVRVFDDYAHHPTEVRAVLGAAADLVRPEDDSSSTNSAAGRVIVVFQPHLY 402

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIR 450
                       ALDLAD  +V D     E+P    +  +           + +  +A +
Sbjct: 403 SRTAAFAEEFAQALDLADEVVVLDVYGAREEPMPGVSGALVAQSVTKPVHYQPDLSQAPK 462

Query: 451 TAIEMLNKQDVLVVAGKG 468
               + +  D+++  G G
Sbjct: 463 QVAALAHPGDIVITMGAG 480


>gi|154685939|ref|YP_001421100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           amyloliquefaciens FZB42]
 gi|166224750|sp|A7Z4E3|MURD_BACA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154351790|gb|ABS73869.1| MurD [Bacillus amyloliquefaciens FZB42]
          Length = 451

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 119/366 (32%), Gaps = 52/366 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + + ++ +   + +   G   T++S    +   
Sbjct: 105 ELAYYITN---AKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGTVASEVAYHADG 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                +  E SS  L        +   G   N+   H+DYH ++
Sbjct: 162 ------------------DEWIVTELSSFQL--MGTHAFRPEIGLILNVFDAHLDYHHSR 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK  ++   L  +  AI+   D     + +                    +K   
Sbjct: 202 ENYEKAKQNVYLHQLESD-TAIVNQSDETVVRLAESGKAGTVPFSVHQELSSGAFIKDGM 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +   + +    +         LPG   + N L A       G  +  + + L     V 
Sbjct: 261 LMFGDEAILPVDDIV-------LPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RP 400
            R ++V             A    +    L   +       +++   G DR  G    +P
Sbjct: 314 HRLQYVTAIQNRKFYNDSKATNILATSKALSAFKA-----PVILLAGGLDRGNGFDDLKP 368

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M  +       A++T     P+ E   K+  E+  GI       N  +A+  A  + N+
Sbjct: 369 YMDNV------KAVLTFGQTAPKIE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNE 417

Query: 459 QDVLVV 464
            DV+++
Sbjct: 418 GDVILL 423


>gi|94498831|ref|ZP_01305375.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
 gi|94421719|gb|EAT06776.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
          Length = 475

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 136/398 (34%), Gaps = 52/398 (13%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGK 112
           GH     A   G A  +V S+A    +    +   T    V   R+   L+         
Sbjct: 59  GHK----AENLGDAAVVVTSTAIKRGNPEVELALET---RVPVIRRAEMLAELMRL---- 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             ++ +AV GT GK++  S +  +    G+    I     I+S+  + RL          
Sbjct: 108 --KSTVAVAGTHGKTTTTSMIAALLDAGGVDPTVI-NGGIINSYGSNARLGNSD------ 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VEA        RLDG        TN+  +H+D++ +     +A   
Sbjct: 159 -----------WMVVEADESDGSFLRLDGTI---AVVTNIDPEHLDHYGSFDRVKDA-FV 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-----LKKVCAIHN 287
            F   +P    A++  D    + ++ R  +          Q          +        
Sbjct: 204 EFVGNVPFYGAALLCLDHPEVQAILPRVQDRRIVTYGFSAQADIRGENVRPVPGGNLFDV 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +       K  D L P+PG   V N+L A G+ + +GI   ++    EK   V  RF 
Sbjct: 264 LIRDRDGHVEKISDILLPMPGRHNVSNSLAAIGVALQLGITHDVICTGFEKFGGVKRRFT 323

Query: 348 FVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
            VG     G    +  DY H    +  +L   R    GR++ +      R    R +M +
Sbjct: 324 KVGEVQLEGGVATVIDDYGHHPVEIRAVLAAAREGALGRVVAIV--QPHRFTRLRDLMDE 381

Query: 405 I--ALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIPG 438
              A + ADI          E P +    A ++ G+  
Sbjct: 382 FQQAFNDADIVYAAPVYAAGEQPIEGVDSAALVAGLKR 419


>gi|326693779|ref|ZP_08230784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           argentinum KCTC 3773]
          Length = 448

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 132/427 (30%), Gaps = 61/427 (14%)

Query: 54  EDGHLFIP-----QAIAQGAEAIVVSSAYSLQDFSATI--RSNTPI--------LVVDNT 98
            +G  F+P     Q  A G   I    A SL      +      P         + +D  
Sbjct: 37  VNGGDFVPDDTFNQLQAAGVTFINHDEATSLDASFDYLIKNPGIPYDTALVQRAIALDIP 96

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              L+  A  L       ++AVTG++GK++  S ++++    G      G   T  S   
Sbjct: 97  --VLTEVAVAL-SSFEGRLIAVTGSNGKTTTTSLIREMLLADGQRVTTAGNIGTPVSEVV 153

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
            + LT    + L                 E SS  L    +  I+      TN+  +H+D
Sbjct: 154 AD-LTADDTLLL-----------------ELSSFQL--MGVPDIQPDIALITNIFANHLD 193

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH T++ Y  AK +L +     ++  +       ++     A        +         
Sbjct: 194 YHGTREQYVAAKFQLTQNQTVAQTLVLNADSPDTAQFTADTAAQVVPFSRTQSGHRVAAT 253

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              +                       L G   + N L A  +    G+++  + + L  
Sbjct: 254 AGNLVIDDQVVMPL---------TAIKLVGPHNLENILAAVTVAKLAGVENEAIRQVLAS 304

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  R E++ T+          A     +E     + +     I +  G     D  +
Sbjct: 305 FGGVAHRLEYLFTDQAVMYYNDSKAT---DIEATQTALDSFDQPTIWLAGGLDRGDDLTR 361

Query: 399 R-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             P M  +   +A            E  +K+ A             +   A R A+ +  
Sbjct: 362 LLPNMTHVKTVVA----------FGETQQKVVAVAKAAGLPVQTVDDVTAAARLAVTLAQ 411

Query: 458 KQDVLVV 464
             DV+++
Sbjct: 412 AGDVVLL 418


>gi|225075608|ref|ZP_03718807.1| hypothetical protein NEIFLAOT_00624 [Neisseria flavescens
           NRL30031/H210]
 gi|224953030|gb|EEG34239.1| hypothetical protein NEIFLAOT_00624 [Neisseria flavescens
           NRL30031/H210]
          Length = 427

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 121/396 (30%), Gaps = 35/396 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++  I + +G     +     +    +
Sbjct: 24  LERVGEVKKRMNLVPQCPVVVVAGTNGKGSVCAYLSHIYKEAGFKVGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSPIYLAKALSYLSS--------QGVTHVSVEASSHGLDQHRLDGIKLI----A 206
               T      L  +                    ++ A    + ++    I  +     
Sbjct: 84  IAINTQQVSDELIVSSFERVEAARGEISLTYFEFNALAAVDIFMRENVDVMILEVGLGGR 143

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-------PAIIYADDAYSKEVMKR 259
               N+         +      A +    E +  E           +   +   + ++K 
Sbjct: 144 LDAVNVFDGDCSVVTSVDLDHQAFLGDTVEQVGFEKAGVFRSGKPAVCGQNPAPESLVKH 203

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   G ++L V  +       +    + +     S          P P     Y    AA
Sbjct: 204 AEEIGAKLLMV-QRDFDFTSMESVQWNYRFHPQSSDGQSRNRNSLPFPALRGAYQLSNAA 262

Query: 320 GLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
                +   +  +   +        L   PGRF+ +        + +D  H  ++   + 
Sbjct: 263 CALTVLECLNEQLPVDIGAIKRGLLLVENPGRFQVLPGRPL---VVLDVGHNPHAARALR 319

Query: 374 KNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAE 431
           +++  +    +   VF    D+D      + +I  D  D   +   N PR    E ++A+
Sbjct: 320 RSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWNIAPLNVPRGMTVEALQAK 376

Query: 432 IIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   GI           A RTA+    + D +VV G
Sbjct: 377 LAEHGIDNVNVFETVAAAYRTALAKATENDRIVVFG 412


>gi|311113341|ref|YP_003984563.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
 gi|310944835|gb|ADP41129.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
          Length = 494

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 134/412 (32%), Gaps = 42/412 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V+S+A   +D    I +    L V +  + L+             ++AV GT GKS+ +
Sbjct: 91  VVISTAI-HEDNPELIAARAQNLRVLHRSEALAAAMGA------SQVVAVAGTHGKSTTS 143

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +  + G        T      +      T                     S   +
Sbjct: 144 SMIAVMLDKLGFHPSFAVGTVIAGYGSNARLGATGE------------------GSWFVA 185

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                       +      TN+  DH+D+++T +  + A  R    ++P       + DD
Sbjct: 186 EADESDGSFVRYQPAIAVVTNVEPDHLDFYETPERVYEAFNRFVASMVPGGVLVTCW-DD 244

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH---------NKQQVTISVEGKDFD 301
             ++ + +RA +AG  V++ G   +          H            +        + D
Sbjct: 245 EGARALAERARDAGIEVVTYGQSTEADLRVSRITSHGSESSATLRWSFECASKHYEGEQD 304

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     NA  A    +  G         L        RF   G +  G +++ D
Sbjct: 305 AQLRVPGIHNQLNAAAAFITALLAGAQPEDAAAALYGFGGADRRFTLRG-DVAGIKVFDD 363

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAH    +   L+  RT+  G  + V        R Q       +     AD + V D  
Sbjct: 364 YAHHPTEVFRALETGRTVADGHNLYVVFQPHLFSRTQEFAADFAQALSK-ADRSYVLDIY 422

Query: 420 PRSEDP-EKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P  E P E + +E+I   G        +   AI          D+++  G G
Sbjct: 423 PARELPIEGVTSELITGAGFSEVHYASDAAAAIEDIAMCAVPGDIIMTIGAG 474


>gi|254562107|ref|YP_003069202.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
 gi|254269385|emb|CAX25351.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
          Length = 468

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 142/450 (31%), Gaps = 64/450 (14%)

Query: 38  RHIQAGWI--FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           R +    I  FV        GH    + +   A  +VVS+A    +          + VV
Sbjct: 46  RRLAENGIRTFV--------GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVV 94

Query: 96  DNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R+   L+           ++ +AV GT GK++  S V  +     L    I     I
Sbjct: 95  ---RRAEMLAELMRF------KSCVAVAGTHGKTTTTSLVATLLDAGNLDPTVI-NGGII 144

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +++  + R+     + +    S                          +       TN+ 
Sbjct: 145 NAYGTNARMGAGDWMVVEADESD--------------------GTFLKLPADVAIVTNID 184

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            +H+D+  + +A  +A  R F + +P    A++  D    ++++    +          Q
Sbjct: 185 PEHLDHFGSFEAIKDA-FRRFIDNIPFYGFAVMCIDHPIVQDLVGHIEDRRIITYGENPQ 243

Query: 274 GKFIHLK------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +       +       +        +  D + P+PG     NA  A  +   +G+
Sbjct: 244 ADVRLIDIDLKGGQSRFRVMIRDRRPGFRMEIEDLVLPMPGRHNALNATAALAVAHELGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            S  + + L     V  RF   G    G  I+ DY H    ++ +L+  R  T GR+I +
Sbjct: 304 PSDAIRKALAGFGGVKRRFTRTG-EWNGATIFDDYGHHPVEIQAVLRAARASTDGRVIAI 362

Query: 388 FGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPG 438
                 R    + +          AD  IV       E P +       I      G   
Sbjct: 363 V--QPHRYTRLQSLFEDFCTCFNDADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRD 420

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +      +  R         D +V  G G
Sbjct: 421 AVALERPEDLARLVAGRAGSNDYVVCLGAG 450


>gi|217077223|ref|YP_002334941.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho africanus TCF52B]
 gi|217037078|gb|ACJ75600.1| UDP-N-acetylmuramate--alanine ligase [Thermosipho africanus TCF52B]
          Length = 433

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 79/241 (32%), Gaps = 9/241 (3%)

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                 + L   +     +       V    +N     +  G       + K+      Q
Sbjct: 179 DHIENFKNLQHYNSCFENSCKNVKICVSNVENNIINNSIKFGLNDGDYKINKIENNKFSQ 238

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           ++TI+       F+  +PG     NAL    L   +G +  LVLE      +   RF+  
Sbjct: 239 KITINTPYGKKKFILNVPGVHNALNALSIISLLFEMGYEKDLVLEAFSDFSLPKRRFDIS 298

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALD 408
             N     I  DY+HT   ++ +L   +++   + I +        + KR       AL 
Sbjct: 299 -YNENDIVIIDDYSHTPVEIKSLLSTAKSVFKDKKITIIFQPHRYSRLKREWKNFSEALS 357

Query: 409 LADIAIVTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEM------LNKQDV 461
           LAD   +T+     E    I    I+  I   I    + E ++               D+
Sbjct: 358 LADKIYITEVYGAFESKNGISARLIVEKINNAIFVQEKEELLQILPSEPGVYIFAGAGDI 417

Query: 462 L 462
           +
Sbjct: 418 I 418


>gi|167749944|ref|ZP_02422071.1| hypothetical protein EUBSIR_00912 [Eubacterium siraeum DSM 15702]
 gi|167657111|gb|EDS01241.1| hypothetical protein EUBSIR_00912 [Eubacterium siraeum DSM 15702]
          Length = 461

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 64/404 (15%), Positives = 116/404 (28%), Gaps = 34/404 (8%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV ++A    +        + +  V+   + L L  S          + V+GT GK
Sbjct: 67  GADLIVYTAAIMSDNPELIAAKASGVKTVERC-ELLGLVTSWY-----NKAVCVSGTHGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S +  +             T                   +    +   S    H  
Sbjct: 121 TTTSSMLTHMYLAQN----VDLSTVIGGKLKAIGGSGRAGSSDVMVCEACEFSNTFLH-- 174

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +        N+  DH+D+ +T      A    F +          
Sbjct: 175 ---------------LFPNISIILNIDADHLDFFKTMDNLR-ASFTKFCDNTTDILVVNG 218

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             ++          +              +    K  +        +    K       +
Sbjct: 219 DDENTMRAVKASGFNKQIITFGKTDKNRYYPENIKRISDFQTDFDLMENGSKIERISIHV 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NA+ A    +A G+    + + L        RFE + T   G  +  DYAH  
Sbjct: 279 PGAHNVLNAVAACAAALATGVTPENINKGLSTFWGAGRRFERLATIG-GITVVDDYAHHP 337

Query: 367 NSLEMILKNIRTIT-SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   LK  + +    R+  V       R           AL++AD  ++T+     E 
Sbjct: 338 AEVAATLKTAKAMQDFKRVWAVHQPFTYSRTYTLMDDFAS-ALEIADKVVLTEIMGSREK 396

Query: 425 --PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  A++   IPG        E  R   +     D+++  G
Sbjct: 397 NTYNVYSADLAAKIPGCKWFPTFEEVARYVADNAESDDMIITLG 440


>gi|160932699|ref|ZP_02080088.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
 gi|156867773|gb|EDO61145.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
          Length = 473

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 138/411 (33%), Gaps = 40/411 (9%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AEA+V ++A      + +A      P L     R  +     R Y     + +AV+GT G
Sbjct: 80  AEAVVYTAAVKQDNPELAAAREKGIPTLE----RSVMLGIVCRRY----ADAVAVSGTHG 131

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + + QI  +SG     I     +     ++R+ +            +  +   +V
Sbjct: 132 KTTTTAMLTQILVQSGKDPTAI-IGGKLPFLGGNSRVGSSEI---------MVCEACEYV 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +        N+  DH+DY +       +     +  L      +
Sbjct: 182 DTFL-----------QLTPAVSIILNIDADHLDYFKDLNNIIKSF---HQFALQTTKRLV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DDA +++ +                  +           ++   +    K  + +  
Sbjct: 228 VNGDDANTQKAIAGVSLPAVTFGMKDTNDYYAGSIAEKKGVCEEFSLMYRGEKLAEIVLS 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PGE  +YNAL AA     +G+    + + L     V  RFE +G N  G  +  D+AH 
Sbjct: 288 VPGEHNIYNALAAAAAAHTLGVSPEDIAKSLHAFTGVHRRFEVLG-NPSGIMVADDFAHH 346

Query: 366 SNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE- 423
              L   L     +    +  VF      R         K AL + D  ++++  P  E 
Sbjct: 347 PTELSATLTAAMKMGFHTVWAVFQPHTYSRTALLLEDFAK-ALSIPDRVVMSEILPVREV 405

Query: 424 DPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
           +   I   ++   IPG +      E            D+++  G G+    
Sbjct: 406 NTYHIYTKDLADKIPGSVWFDTFEEITDYVTAHAEPGDLILTLGGGN-VYQ 455


>gi|326391690|ref|ZP_08213215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992268|gb|EGD50735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 454

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 102/300 (34%), Gaps = 20/300 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + + +     +  E SS  L+   +   K       N+  DH++ H+T ++Y 
Sbjct: 143 IGYPLIYAVMEATEGDFIVAEISSFQLET--IKEFKPKISCIINITPDHLNRHKTFESYR 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K R+FE     E   + + DD  +  +  +A                 ++K      +
Sbjct: 201 DIKGRIFENQRGDEYTVLNF-DDPVTWSLKNKAKCRVFPFSRKSSLENGAYVKDGSIYIS 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  +   +  +   +PGE  + NAL A+ +    GI + ++   L+    V  R E
Sbjct: 260 VNGNAKKIIDIEEIY---IPGEHNLENALAASSVAYLSGISANVIASTLKSFKGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++ +      +  +V   GG     +     K   
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQAL------KTPIVLIAGGYDKGSEFDEFVKAFN 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       +  +KIR             +  G   EA++ A E   + D +++
Sbjct: 371 GKVKKLILI-----GQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|228960733|ref|ZP_04122372.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798949|gb|EEM45924.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 433

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++           V     GL   R D   +I  
Sbjct: 102 KLVKPVVEKLNETDLGEATEFEIITVMAICYFGKFNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              + +          +               + +         G   +    V      
Sbjct: 221 LYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +    +     GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIAENDVFIITG 417


>gi|145637109|ref|ZP_01792772.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
 gi|145269763|gb|EDK09703.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
          Length = 475

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 118/376 (31%), Gaps = 41/376 (10%)

Query: 59  FIPQAIA--QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +I  A    +GA  +VVSSA    +    A+ +   P++      + L+      +G   
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG--- 120

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +AV GT GK++  + +  I       +                +           A 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIAE 173

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +  S     H+    S                   TN+  DH+D ++       A    F
Sbjct: 174 ADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVKF 216

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++ ADD    E++ +                 I   +           I 
Sbjct: 217 LHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VIC 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
              +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   R
Sbjct: 276 PNNERINVLLNVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIR 335

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDL 409
                R+  DY H    + + +K  R     + IV+        + +       ++    
Sbjct: 336 PNGKVRLVDDYGHHPTEVGVTIKAAREGWGEKRIVMIFQPHRYSRTRDLFDDFVQVLSQ- 394

Query: 410 ADIAIVTDDNPRSEDP 425
            D  I+ D     E P
Sbjct: 395 VDALIMLDVYAAGEAP 410


>gi|327404198|ref|YP_004345036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
 gi|327319706|gb|AEA44198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
          Length = 447

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 109/351 (31%), Gaps = 37/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + +TG++GK++    +  + +++GL     G                          
Sbjct: 106 AKKVCITGSNGKTTTTMLIHHMLKKAGLKVGLAGNVG-------------------YSFA 146

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +      +E SS  LD   ++  K      TN+  DH+D ++     +       
Sbjct: 147 KQVALEDNEIYVLELSSFQLDD--MEDFKAEIAILTNITPDHLDRYEYNMQLYVNSKFRI 204

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                     I  ADD      +++   +  ++     Q                    +
Sbjct: 205 LNNQTAGDYFIYNADDKTILAELEKRSISAQKLPFSLTQEFEQGAYTANKQLIIN---FN 261

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L G+    N+L +      + I   +V E L     V  R EFV     
Sbjct: 262 NQFTMSIHELALKGKHNTQNSLASGLAGRILDIRKDIVRESLSDFVNVEHRLEFVAKVCG 321

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A   NS       + ++    I +V G     D      + ++  +     I
Sbjct: 322 IEFINDSKATNINSTW---FALESMEQPTIWIVGGVDKGNDYS---ELVELVKEKVKAII 375

Query: 415 -VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  DN      +KI       +   +E G+ +EA+     +  K + +++
Sbjct: 376 CLGKDN------QKIIDTFSGHVETIVEAGSAMEAVAYGYRLAKKDETVLL 420


>gi|294675705|ref|YP_003576320.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
 gi|294474525|gb|ADE83913.1| CDA peptide synthetase III [Rhodobacter capsulatus SB 1003]
          Length = 1288

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 133/414 (32%), Gaps = 45/414 (10%)

Query: 63  AIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           A+A+ A+ ++ S A         A  R+  P   V +  + L+   +          + V
Sbjct: 60  ALARAADCVIASPAIPETHVERRAARRAGLP---VKSRARALAEVIA------DRQTICV 110

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-DNRLTTPSPIYLAKALSYLSS 179
            G+ GKS+V + +  I   +G   F     +  +  A+   RL  P   ++ +A      
Sbjct: 111 AGSHGKSTVTAMLIHILSAAGQEDFGYMLGAAFADAARLPARLGAPDAPFVTEACEAH-- 168

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                              L   +      TNL  +H D++        A    F   LP
Sbjct: 169 -----------------GALAAWQPSLAILTNLDDEHADHYGGLPGLRRAVA-DFLSRLP 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            E  A+   DD    ++++RA  A                 +                  
Sbjct: 211 PEGRAVACGDDPQVLDLLRRARCAALTYGLGADNDL-----RAVPDGTGGATVFLNGTDL 265

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG   + NAL A G+ + +GI  A     L     +  R + V   +R  R++
Sbjct: 266 GRLSLIVPGRHNLRNALAALGMALTLGIGFATAAGALADFPGLARRLQPVAPGNR-LRLF 324

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
            D+AH    +E  L  +R  T GR+I +F                 AL  AD + +    
Sbjct: 325 DDFAHHPAEIEAALAVLRETTEGRLIAIFEPQLHSRITLMAARFAQALGAADHSYLLPVV 384

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV-AG 466
              E          +      G        +  E +      L   + LVV AG
Sbjct: 385 ALGETAQAGNGDAALAEACRAGGLSCDHVSDMSELLARLQADLQGDETLVVMAG 438


>gi|332288551|ref|YP_004419403.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330431447|gb|AEC16506.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 480

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 133/416 (31%), Gaps = 44/416 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA  +VVSSA    D    I +    + V    + L+      +G      +AV GT G
Sbjct: 81  AGASVVVVSSAIK-PDNPEVIAAREARIPVIQRAQMLAEIMRFRHG------IAVAGTHG 133

Query: 126 KSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  + +  I  Q     +F  G     +       L+        ++ +         
Sbjct: 134 KTTTTAMIAMIYAQAKLDPTFVNGGLVKSAGTNAHLGLSRYLIAEADESDASFLH----- 188

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            ++ +    TN+  DH+D +             F   LP    A
Sbjct: 189 -----------------LQPMVAVVTNIEPDHMDTYHGNFEEMKQTYINFLHNLPFYGLA 231

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++ ADD   + ++ +                 I               I  +G+  + L 
Sbjct: 232 VLCADDPVLQTLLPKVGRQVITYGFSDKADYRIEDYSQTGFQGHYT-VICPDGQRMEILL 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD 361
            +PG+    NA  A  +    GID   +L  L        RF+ +G+  R      +  D
Sbjct: 291 NVPGKHNALNATAALAVAKEEGIDDESILAALADFQGAGRRFDQLGSFIRPNGKVMLIDD 350

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDN 419
           Y H    + + ++  R     + IV+        + +       ++     D+ I+ D  
Sbjct: 351 YGHHPTEVNVTIQAARHGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ-VDVLIMLDVY 409

Query: 420 PRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P  E P        +   I + G    I   +  +      ++L   D+++  G G
Sbjct: 410 PAGEAPIAGADSRSLCRSIRNLGKIDPIFLADPEQLPEIMDQVLQDGDLILAQGAG 465


>gi|309806563|ref|ZP_07700563.1| bifunctional protein FolC [Lactobacillus iners LactinV 03V1-b]
 gi|308167042|gb|EFO69221.1| bifunctional protein FolC [Lactobacillus iners LactinV 03V1-b]
          Length = 295

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I  +  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 180 IDGAHNPDAAYNLAQTIINLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 236

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ + + P  I A+  +     ++  N   A++ A +     D++VV G
Sbjct: 237 DHLQRKLPVAILAQ--NFNNHVVQAVNVRSALKIARQNAKPDDLIVVTG 283


>gi|291557015|emb|CBL34132.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           V10Sc8a]
          Length = 511

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 116/318 (36%), Gaps = 19/318 (5%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R +++     + G     ++ +TG+ GK+S   +++   +  G     +    + +    
Sbjct: 152 RHYINDAKRIINGLPDLTVVGLTGSYGKTSTKFYLE---KLLGAKYNVLMTPESYN---- 204

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               TT   + +       ++  +    + A + G  +   D +K   G  T++G  H++
Sbjct: 205 ----TTMGVVKV-VRGQLNATHEIFLCEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLE 259

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
             ++       K  L + L  K+    +  D+ Y    + +      +V      G   +
Sbjct: 260 TFKSIDNIIKTKFELADSLPDKDGIIFLNYDNEY----IAKHECNKNKVTYSLGGGTDYY 315

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              +    N  Q T+    ++  F   L G   V N + A  +   +G+  A ++  +++
Sbjct: 316 ADNISVSENGTQFTVHNGNEEKQFTTKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKR 375

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQ 396
           L  VP R + +   +    I   +       +  L  +      +I+V       G+++ 
Sbjct: 376 LECVPHRLQIIK-GTNKTIIDDAFNSNPTGAKAALDTLAVFEGFKILVSPGMVELGEKEY 434

Query: 397 GKRPIMGKIALDLADIAI 414
                 G+ A ++ D  I
Sbjct: 435 ELNKRFGEQAAEICDFVI 452


>gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
 gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
          Length = 454

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 101/300 (33%), Gaps = 20/300 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + + +     +  E SS  L+   +   K       N+  DH+D H+T + Y 
Sbjct: 143 IGYPLIYAVMEAAEDDFIVAEISSFQLET--IKEFKPKISCIINITPDHLDRHKTFENYR 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K R+FE     E   + Y DD  +  +  +A                 ++K      +
Sbjct: 201 DIKGRIFENQREDEYTVLNY-DDPVTWNLKNKAKCRVFPFSRKSLLENGAYVKDGSIYIS 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  +   +  +   +PGE  + NAL A+ +    GI + ++   L+    V  R E
Sbjct: 260 VYGNAEKIIDIEEIY---IPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++ +      +  +V   GG     +     K   
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQAL------KTPIVLIAGGYDKGSEFDEFVKAFN 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+       +  +KI+             +  G   EA++ A E   + D +++
Sbjct: 371 GKVKKLILI-----GQTAKKIKDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|328949820|ref|YP_004367155.1| FolC bifunctional protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450144|gb|AEB11045.1| FolC bifunctional protein [Marinithermus hydrothermalis DSM 14884]
          Length = 413

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGK 398
            + PGR E++        + +D AH  +    + + +    SG    +V     D+D   
Sbjct: 274 FMHPGRMEYLPERR----LLLDGAHNPDGARALGRALEAHFSGWPRTLVLALSEDKDP-- 327

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
                    +  +  +VT    PR+ DP    A +    PG        +A+  A+ +  
Sbjct: 328 -RAFAAAFRECFERVVVTRYAAPRAMDP----AALHAHFPGAEVVEESAKALERALAVTP 382

Query: 458 KQDVLVVAG 466
            + ++VVAG
Sbjct: 383 PEGLVVVAG 391


>gi|229048174|ref|ZP_04193743.1| Folyl-polyglutamate synthetase [Bacillus cereus AH676]
 gi|229129749|ref|ZP_04258716.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-Cer4]
 gi|228653665|gb|EEL09536.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-Cer4]
 gi|228723161|gb|EEL74537.1| Folyl-polyglutamate synthetase [Bacillus cereus AH676]
          Length = 433

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++           V     GL   R D   +I  
Sbjct: 102 KLVKPVVEKLDETDLGEATEFEIITVMAICYFGKFNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              + +          +               + +         G   +    V      
Sbjct: 221 LYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +    +     GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIAENDVFIITG 417


>gi|229147027|ref|ZP_04275387.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST24]
 gi|228636415|gb|EEK92885.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST24]
          Length = 433

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++           V     GL   R D   +I  
Sbjct: 102 KLVKPVVEKLDETDLGEATEFEIITVMAICYFGKFNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              + +          +               + +         G   +    V      
Sbjct: 221 LYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +    +     GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIAENDVFIITG 417


>gi|309801878|ref|ZP_07695994.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|308221493|gb|EFO77789.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 164

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 22/120 (18%)

Query: 3   LQD--LIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGW-IFVAIVG----NKED 55
           L++  L+ +        L    +      +  ++ D+R ++ G  +FV   G       D
Sbjct: 17  LKEHHLLREIVHGRRWTLDASDLPGANEPVGSITYDTRKVEPGSMLFV--KGRFKPEFLD 74

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           G         +G  A V  + Y+ +  +         ++V++  K +SL ++  YG    
Sbjct: 75  GID------GKGLAAYVAETEYADRTKAIG-------IIVEDVHKAMSLLSAAFYGMPQN 121


>gi|295394737|ref|ZP_06804952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972333|gb|EFG48193.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 501

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 114/374 (30%), Gaps = 46/374 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R+ G +    L +TGT+GK++  S +  + + +G+++   G   +    A  +   
Sbjct: 134 ELAWRVRGTNAAPWLVITGTNGKTTATSMLASMFRAAGVNAVACGNIGSPLLEAVLDPAA 193

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               I LA    +       H                       +  NL  DH+D+H + 
Sbjct: 194 EVLAIELASFQLHWQFSMCAHS---------------------AAVLNLAPDHVDWHGSY 232

Query: 224 QAYFNAKMRLFEELLPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           + Y   K R++  ++          A     +        RA   G  V   G  G    
Sbjct: 233 ENYVADKARVYSNVMKACVYNREDLATRKLVEDAEVVAGARAVGFGLGVPGPGEFGLVED 292

Query: 279 LKKVCAIHNKQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +    A    +  +     S++            +  V NAL AA L  +I +    V +
Sbjct: 293 ILVDRAFAPNRYSSALELASLDDVAKAAGTTSAPDHYVMNALAAAALARSIDLPPVAVRD 352

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L        R   V T      +    A   ++    L +         IV    G  +
Sbjct: 353 GLRSFAPGDHRMRVVRTLDDITWVNDSKATNPHAASAALGSFDP------IVWIAGGLPK 406

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN----RIEAIR 450
                 I+      L  + ++       ED   + + +       I           A+ 
Sbjct: 407 GADYHDIVEGFKDRLRSVVVI------GEDDSALSSALEASHVDTIRIEPGPRVMERAVN 460

Query: 451 TAIEMLNKQDVLVV 464
            A E+    D +++
Sbjct: 461 AARELAQPGDTVLL 474


>gi|253580162|ref|ZP_04857429.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848681|gb|EES76644.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 96/298 (32%), Gaps = 18/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I        L  +  +    E SS  L+   +D       +  N+  DH++ H T + Y 
Sbjct: 144 IGTPYTSKALEMKPNSITVAEISSFQLET--IDEFAPKVSAILNITEDHLNRHHTMEEYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K  + E    ++   + Y +D   +E  K          S     + I+L     I  
Sbjct: 202 RVKELITENQGTEDVCVLNY-EDEVLREFGKHLTPRVVYFSSGRKLDEGIYLDGNKIILK 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  I V   +      L G+    N + A  +    G+    + + + +   V  R E
Sbjct: 261 DGEKEIEVVKTE---DLKLLGKHNFENVMAAVAMAYYDGVSLDSIRKSICEFTAVAHRIE 317

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +V                 ++    ++        R  ++ G G D+  G    +     
Sbjct: 318 YVTEKKGVVYYNDSKGTNPDAAIKGIQA-----MNRPTLLIGGGYDKQSGYDEWIEAFDG 372

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++       +  EKI+      G    I   +  EA++   E     D +++
Sbjct: 373 KVRYLVLI------GQTKEKIKEAAEKHGFHDIILCEDLKEAVKVCEEKAQPGDAVLL 424


>gi|163852359|ref|YP_001640402.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218531119|ref|YP_002421935.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240139696|ref|YP_002964173.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
 gi|229620038|sp|A9VWV4|MURC_METEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766010|sp|B7KSC2|MURC_METC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163663964|gb|ABY31331.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218523422|gb|ACK84007.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240009670|gb|ACS40896.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
          Length = 468

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 142/450 (31%), Gaps = 64/450 (14%)

Query: 38  RHIQAGWI--FVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVV 95
           R +    I  FV        GH    + +   A  +VVS+A    +          + VV
Sbjct: 46  RRLAENGIRTFV--------GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVV 94

Query: 96  DNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
              R+   L+           ++ +AV GT GK++  S V  +     L    I     I
Sbjct: 95  ---RRAEMLAELMRF------KSCVAVAGTHGKTTTTSLVATLLDAGNLDPTVI-NGGII 144

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +++  + R+     + +    S                          +       TN+ 
Sbjct: 145 NAYGTNARMGAGDWMVVEADESD--------------------GTFLKLPADVAIVTNID 184

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            +H+D+  + +A  +A  R F + +P    A++  D    ++++    +          Q
Sbjct: 185 PEHLDHFGSFEAIKDA-FRRFIDNIPFYGFAVMCIDHPIVQDLVGHIEDRRIITYGENPQ 243

Query: 274 GKFIHLK------KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +       +       +        +  D + P+PG     NA  A  +   +G+
Sbjct: 244 ADVRLIDIDLKGGQSRFRVMIRDRRPGFRMEIEDLVLPMPGRHNALNATAALAVAHELGV 303

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            S  + + L     V  RF   G    G  I+ DY H    ++ +L+  R  T GR+I +
Sbjct: 304 PSDAIRKALAGFGGVKRRFTRTG-EWNGATIFDDYGHHPVEIQAVLRAARASTDGRVIAI 362

Query: 388 FGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPG 438
                 R    + +          AD  IV       E P +       I      G   
Sbjct: 363 V--QPHRYTRLQSLFEDFCTCFNDADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRD 420

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +      +  R         D +V  G G
Sbjct: 421 AVALERPEDLARLVAGRAGSNDYVVCLGAG 450


>gi|301165435|emb|CBW25006.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Bacteriovorax marinus SJ]
          Length = 457

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 100/271 (36%), Gaps = 10/271 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  I    TN+  DH+D++ + +A   +    F   +P      + A D     + K   
Sbjct: 173 LNPIMSVVTNIDNDHMDHYGS-EANLLSSFTEFINKVPFYGLTALNAHDERLMALTKEVK 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                              +    +           K  +    +PG+  + N+L A  L
Sbjct: 232 KPWVTFGVETEADFEARDIRYE-NNITIYDLYHSGEKKIEIRITIPGKHNILNSLGAIAL 290

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+    + + + K   V  RF+ +        +  DYAH    +++ LK ++    
Sbjct: 291 AFNMGVPFEEIAKSIIKFDGVGRRFQTL-VAKDNFEVIDDYAHHPTEIDVTLKAMKETRP 349

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDP------EKIRAEIIH 434
            + IVV        + +      +   + AD   ++   P SE P      +++ A+I  
Sbjct: 350 NKKIVVVFEPHRYSRTRDCWDSFLHCFNSADTVYISPIYPASEKPIPGIEADRLIADINK 409

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             P  ++K + IE I + I+   +++V +V 
Sbjct: 410 LHPDLVKKLDSIENIDSIIDNYKEENVTLVT 440


>gi|53711596|ref|YP_097588.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis YCH46]
 gi|60679846|ref|YP_209990.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis NCTC
           9343]
 gi|265764980|ref|ZP_06093255.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_16]
 gi|52214461|dbj|BAD47054.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides fragilis YCH46]
 gi|60491280|emb|CAH06028.1| putative UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           fragilis NCTC 9343]
 gi|263254364|gb|EEZ25798.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_16]
          Length = 464

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 129/416 (31%), Gaps = 48/416 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP+A    A  +VV +    Q+ +           +    + L               L 
Sbjct: 63  IPEACKDKATTLVVLTPAVPQEHAELTYFRDNGFEIQKRAQVLGTITR------SSKGLC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ ++    +  +S +            ++  +  L++ SP  + +A  +  S
Sbjct: 117 VAGTHGKTTTSTMTAHLFHQSHVGCTAF-LGGISKNYGTNLLLSSTSPYTVIEADEFDRS 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +                      T    DH+D + T +  +      +  L+ 
Sbjct: 176 FHWLSPYMSV-------------------ITATDPDHLDIYGT-EQAYLESFEHYTTLIQ 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                II    +   +V +             +  + I +       +     I ++   
Sbjct: 216 PGGALIIRKGISLQPKVKEGVKMYTYSRDEGDFHAENIRIGNGEIFIDFVGPDIRIDN-- 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +P    + N + A  L    G+    + + +     V  RF+F   N+R     
Sbjct: 274 --IQLGVPVSINIENGVAAMALAHLNGVTPEEIKQGMASFRGVDRRFDFKIKNNR-IVFL 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRII-VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
            DYAH  + ++  + ++R +   + I  VF      R +            L D  I+ D
Sbjct: 331 SDYAHHPSEIKQSVMSMRELYRDKKITAVFQPHLYTRTRDFYKDFADSLS-LLDEVILVD 389

Query: 418 DNPRSEDP------EKIRAEIIHGIPGF----IEKGNRIEA--IRTAIEMLNKQDV 461
             P  E P        I   +  GI        E  + ++A  I   I +    D+
Sbjct: 390 IYPAREQPIPGVSSRLIYDNLRPGIEKSMCKKEEILDVLKAKHIEVLITL-GAGDI 444


>gi|113971900|ref|YP_735693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-4]
 gi|113886584|gb|ABI40636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-4]
          Length = 439

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 128/397 (32%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I++S   ++         +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  AKQIIISPGIAIDTPEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + +         +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGIP-------------ALDLLTENADI-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDA 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                          A       G     I+      +                    L 
Sbjct: 220 LTIPTEPMNQNSFGLAPPEGDEWGICDSKIYHGHSEIMPIT--------------EVSLI 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+G+D  ++ +       +  R E VG  +    +    A    
Sbjct: 266 GSHNHANLLAAMALVYAVGVDKQVMAKVARTFTGLSHRCEVVGVKAGVTYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +         ++   GGD   GK      +   L     VT       D  K
Sbjct: 326 ATVAALDGLSDHLGD---IILIAGGD---GKGADFSPLVEPLTK---VTHLITLGRDGNK 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A +  G    I+  +   A+  A E+    D++++
Sbjct: 377 IAA-LKEG---AIKVDSMAAAVAKAAELATSGDIVLL 409


>gi|332202563|gb|EGJ16632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41317]
          Length = 450

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 120/389 (30%), Gaps = 50/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            YS       +    P+L    T   L+   S         I+ +TG++GK++  + + +
Sbjct: 83  PYSNPMIEKALVKGIPVL----TEVELAYLISE------ALIIGITGSNGKTTTTTMIGE 132

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +   +G      G     +S                       +     + +E SS  L 
Sbjct: 133 VLTAAGQHGLLSGNIGYPASQV------------------AQIASDKDTLVMELSSFQL- 173

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +          TNL   HIDYH     Y  AK  +  ++   +   + +  D     
Sbjct: 174 -MGVQEFHPEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDL 232

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
             K               G         A     Q+    E         +PG   V NA
Sbjct: 233 ASKTEATVVPFSTLEKVDG---------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENA 283

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    +    G+D+  + E L     V  R +FV             +    + +  L  
Sbjct: 284 LATIAVAKLRGVDNQTIKETLSAFGGVKHRLQFVDDIKGVKFYNDSKSTNILATQKALSG 343

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +V+   G DR      ++  I   L  + I+       +  E+++      
Sbjct: 344 F----DNSKVVLIAGGLDRGNEFDELVPDITG-LKKMVIL------GQSAERVKRAADKA 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++E  +  +A R A E+  + DV+++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|77918352|ref|YP_356167.1| folylpolyglutamate synthetase; dihydrofolate synthetase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544435|gb|ABA87997.1| folylpolyglutamate synthetase; dihydrofolate synthetase [Pelobacter
           carbinolicus DSM 2380]
          Length = 422

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 108/387 (27%), Gaps = 37/387 (9%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQDN 160
            A   + +    I+ V GT+GK SV++    I Q +G  +         S          
Sbjct: 29  LARLDHPERAMRIVHVAGTNGKGSVSAATALILQTAGYRTGLYTSPHLHSFTERIRIDGV 88

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           +++ P  + L   +  +            ++  L   R              GR      
Sbjct: 89  QVSEPDMVSLVDEVRAVVGSLPVTFFEFTTAMALVYFRNRHTDFAVLEVGMGGRLDATNA 148

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDA-----YSKEVMKRAHNAGCRVLSVGYQGK 275
              +      +            A I  + A         V+   H    RVL       
Sbjct: 149 VESEISVVTPVCCDHAEHLGADLATIAGEKAGIIKRQVPVVIAEQHPDAQRVLLTKAAEM 208

Query: 276 ----FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-- 329
                +  +    I +               L P          L  A        +   
Sbjct: 209 LAPVCLWDRDFRIIDHDTHFDFFAPSLTLKGLRPGLAGAHQRQNLAVALAACMSLRNRGV 268

Query: 330 ---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                 L +  +    PGR E+     R   I +D AH      ++ + + ++   ++  
Sbjct: 269 ALSEEALRYGVEKVQWPGRLEWWRQQRR---ILLDGAHNHGGAVVLARYLASLDGKKVRW 325

Query: 387 VFGCGGDR--DQGKRPIMGKIALDLA-----DIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           V G  G R  D    P++   A   A     D  I         +P+K+           
Sbjct: 326 VVGIKGQRCIDDILTPLLPHTAHLYATLPPVDQGI---------EPDKLVRAARAAGVLA 376

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  +A+  A+    + DV++VAG
Sbjct: 377 KAYATPADAMTAALADQGEDDVVLVAG 403


>gi|86606524|ref|YP_475287.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. JA-3-3Ab]
 gi|109892748|sp|Q2JTH3|MURC_SYNJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86555066|gb|ABD00024.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. JA-3-3Ab]
          Length = 510

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 133/414 (32%), Gaps = 51/414 (12%)

Query: 71  IVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V SSA      + +A +     +    +    L         +     + V GT GK++
Sbjct: 96  VVYSSAIRPTNPELAAALDKGLKVWHRADLLAAL------FNHRPS---IGVAGTHGKTT 146

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +G     I     + ++  + RL     +      S             
Sbjct: 147 TSSMIGYMLLAAGWDPTLI-IGGEMDAWDGNARLGQGEYLVAEVDESD------------ 193

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                     L  +    G  TN+  DH D++   +    A  +  +    +   A +  
Sbjct: 194 --------GSLVRLYPQIGVITNIELDHPDHYANLEQVIRAFQQYGQ--QSQTLVACLDC 243

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +  +   +   ++      +     + ++     +    ++ ++  + +       + G
Sbjct: 244 PNVATHLKVDIGYSLAGHPQAQYQARQILYTADCTSAEIWERGSLLGQLR-----LQVLG 298

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A  +   +G++ A++   L +   V  RFE  G    G     DYAH  + 
Sbjct: 299 SHNLSNALAAVAVGRQLGLEFAVIASALAEFRGVQRRFEVKG-EVGGVTFIDDYAHHPSE 357

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD--IAIVTDDNPRSE--- 423
           +   L+  R +   R++ VF     R      +    A   AD  + ++       E   
Sbjct: 358 IRATLRAAR-LQQRRVVAVF--QPHRHSRLAKLFQDFACCFADAQVVVIVPTYGAGEAAP 414

Query: 424 ---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
              D  ++   +    P      +  +  +    +L   D+ +  G G     I
Sbjct: 415 EGSDSLRLAVSVAEHHPHVRYVSSLPQLPQVLPSILQPGDLAIFLGAGDLNQQI 468


>gi|84495980|ref|ZP_00994834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
 gi|84382748|gb|EAP98629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
          Length = 502

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 110/367 (29%), Gaps = 50/367 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L VTGT+GK++    +  I + +G  +   G   T    A    +  P P       
Sbjct: 139 APWLTVTGTNGKTTTVQMLTSILRAAGKRAISAGNVGTPILEA----IMDPEPFD----- 189

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     ++VE SS  L     D I+  A    N+  DH+D+H + + Y  AK +++
Sbjct: 190 ---------AIAVELSSFQLHWS--DSIRPQASVCLNVAPDHVDWHGSYEDYLAAKGKVY 238

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-------LKKVCAIHN 287
                     +         E  +          ++G     +          +      
Sbjct: 239 NNTQVACIYNVDDPQTERLVEDAEVQEGCRAVGFTLGTPAPSMLGLVGEVLADRAFVEQR 298

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +          D     P      V NAL AA L  A G+++  V   L+       R  
Sbjct: 299 RHAAAELATIDDLRGDSPDVAPHLVANALAAAALARAHGVEAGAVRAGLKAFRPEAHRIA 358

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V T      +    A   ++    L            VV+  GG         + + A 
Sbjct: 359 HVATLEDVRYVDDSKATNPHAAAASLTAY-------EHVVWIAGGLLKGADVDDLVRTAA 411

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---------NRIEAIRTAIEMLNK 458
                 ++        D  +I   +    P               +R+  +  A  +   
Sbjct: 412 PSLRGVVLI-----GRDRAQIADALARHAPDVPVVDVADTDTGVMDRV--VSQAASLAQS 464

Query: 459 QDVLVVA 465
            DV+++A
Sbjct: 465 GDVVLLA 471


>gi|330877135|gb|EGH11284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 448

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 119/361 (32%), Gaps = 41/361 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +R        ++A+TG++ KS+V + V ++   +G      G   T           
Sbjct: 101 ELFARYAKAP---VIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP---------- 147

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L      L         +E SS  L+    D +     +  N+  DH+D +   
Sbjct: 148 ---ALDLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGL 195

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+F          ++   DA S+ ++      G    + G      H   + 
Sbjct: 196 PAYHLAKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLR 247

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + ++ +    +         + G     NAL A  L  A+G+    +L  L +   + 
Sbjct: 248 EENGEKFLAFQFDNLMPVSELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +++   +         A    +    ++ + +   G+  +V   GGD        + 
Sbjct: 308 HRCQWLRERNGVDYYNDSKATNVGAALAAIEGLGSDIDGK--LVLIAGGDGKGADFSGLR 365

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                    A++        D E I   +   +P  I       A   + E+    D ++
Sbjct: 366 APVAQYCRAAVL-----LGRDAELIAQALGDAVP-LIRVDTVQAAAERSAELAQHGDAVL 419

Query: 464 V 464
           +
Sbjct: 420 L 420


>gi|311103999|ref|YP_003976852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
           xylosoxidans A8]
 gi|310758688|gb|ADP14137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Achromobacter
           xylosoxidans A8]
          Length = 510

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 129/386 (33%), Gaps = 49/386 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A     +    +L VTGT+GK++V +  +Q+ + SGLS    G  S  +  A  
Sbjct: 118 RALADLAETREYRP--RLLTVTGTNGKTTVTALTRQLIEASGLSVVAAGNISPAALAALM 175

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           +                 +        +E SS  L+      +   AG   N+ +DH+D+
Sbjct: 176 DA--------------LDAESLPQVWVLELSSFQLET--THSLMADAGVVLNVTQDHLDW 219

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL---------SV 270
           H + +AY  AK RL    L     AI+  DD Y+ +++   +    R            +
Sbjct: 220 HGSMEAYAQAKARL----LKMARVAIVNRDDPYTVDMVATLNALNVRSFGRDVPELVGDM 275

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G +        V    N          +  D   P+  + ++   +    L I    ++ 
Sbjct: 276 GLELGQGVAWLVACEPNDFDEPAPPVRRKKDAPEPVRAKGRMSRLMPVDALRIRGIHNAL 335

Query: 331 ------------LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                        +        +     E            VDY + S    +       
Sbjct: 336 NALAALQLARCLDLGWGAMLRALREYAGEPHRAAFVRTIGGVDYINDSKGTNVGATVAAL 395

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              G+ +V+   G  + Q   P++  +    A   ++       +D  +I   +      
Sbjct: 396 EGLGQQVVLIAGGQGKGQDFAPLIPGV-TQHARAVMLI-----GQDGPEIGRVLASTGVQ 449

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +      +A+R A E+    D +++
Sbjct: 450 CVMAETLRDAVRGAAELAQPGDAVLL 475


>gi|304413644|ref|ZP_07395088.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
 gi|304283735|gb|EFL92129.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 133/427 (31%), Gaps = 57/427 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVT 121
           QGA  +VVSSA    +    A   +  P++     R+   L+      +G      +AV 
Sbjct: 77  QGASVVVVSSAIPENNVEIVAARAARIPVI-----RRAEMLAELMRYRHG------IAVA 125

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  + V  I   +GL    +     + +     RL                   
Sbjct: 126 GTHGKTTTTAMVASIYADAGLDPTFV-NGGLVKAAGVHARLG----------------CS 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              ++    S     H    ++ +    TN+  DH+D +Q            F   LP  
Sbjct: 169 RYLIAEADESDASFLH----LQPMVAIVTNIEADHMDTYQGNFENLKQTFINFLHHLPFY 224

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DDA  +E++ R                 I   +                 +  
Sbjct: 225 GRAVMCIDDARIREILPRIGRHITTYGFSDDADIQIKDYQ-QQQAQGCFTLCRPGKTELK 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NS 353
            +   PG     NA  A  +     I    +L  L        RF+F+G           
Sbjct: 284 VMLNAPGCHNALNAAAAIAVATEERISDDCILTALANFQGTGRRFDFLGHFSLEKVNGKK 343

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               +  DY H    + + +K  R     + IV+        +         K+  +  D
Sbjct: 344 GSVMLVDDYGHHPTEVAVTIKAARAGWPEKRIVMIFQPHRYSRTHDLYDDFAKVLAE-VD 402

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVL 462
           + ++ +     E P        +   I    P  +E     +    +    + LN  D++
Sbjct: 403 VLLMLNVYAAGEKPIPGADSRSLCRTIRVRNPDQLEPIFISDNEALLDILAKQLNDNDLV 462

Query: 463 VVAGKGH 469
           ++ G G+
Sbjct: 463 LIQGAGN 469


>gi|296113749|ref|YP_003627687.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
 gi|295921443|gb|ADG61794.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
          Length = 469

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 124/387 (32%), Gaps = 32/387 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSV 129
           I++S     +  S        I VV + + F+    A  L       ++A+TG++ KS+V
Sbjct: 65  IIISPGIDPRTPSIAAAKAQGIPVVSDVQLFIDTLKARDLAQATNTPVIAITGSNAKSTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ +R+G+     G   T               + L           +  V +E 
Sbjct: 125 TTLVGEMAKRAGMIVGVGGNIGTP-------------ALELLTIQ------NMDLVVLEL 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE              
Sbjct: 166 SSFQLE--HISNLAAQGATILNLSADHLDRHDGMADYLAQKLRIFEHCQTAIICQDDAGL 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  ++R       + +            +    +   +    +         + G+
Sbjct: 224 AKQCLTTLQRIAPNHTIITTNSLLSHQTADFYLFDDGDGMALYHQKDKLLPIHQLKIKGK 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL A  L  A  +    +L+ L+    +P R E++                  S 
Sbjct: 284 HNLLNALSALALGTAANLPMDAMLDTLKTFKGLPHRCEYIDDIDGKAYFNDSKGTNIGST 343

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +  + T+     + +   G  + Q     +       AD   +       +D   I 
Sbjct: 344 MAAIDGLGTVYGTSSLALILGGLGKGQDF-SELSAYVTQWADSVYLI-----GQDAPMIE 397

Query: 430 AEIIHG----IPGFIEKGNRIEAIRTA 452
            +++ G    +    + G   +A+  A
Sbjct: 398 QDLLKGDAHLVSKIYQVGTLDQAVLAA 424


>gi|294634491|ref|ZP_06713026.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda ATCC 23685]
 gi|291092005|gb|EFE24566.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda ATCC 23685]
          Length = 456

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 112/369 (30%), Gaps = 41/369 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G      G          +         +     
Sbjct: 103 RWVIAVAGTHGKTTTAGMVNWILEACGYQ---PGFVIGGVPGNFEVSARLGDSPFFVIEA 159

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                      S                        NL  DH D     +A    +    
Sbjct: 160 DEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLRAIQK-QFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+P +   I  A+DA  K+V+     +       G      H +K+    +   VT+ 
Sbjct: 208 VRLVPGKGRIISPANDANLKQVLAMGCWSEQEQSGEGAA---WHAQKLSPDASHFVVTLD 264

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E +  +  + L GE  ++N L+A      +G+  A     L        R E  G  + 
Sbjct: 265 GE-RVGEVQWSLVGEHNMHNGLMAIAAARHVGVPPAEACRALASFINARRRLELRG-EAY 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------KIA 406
           G  +Y D+AH   ++   L  +R    G  RI+ V        +     MG        A
Sbjct: 323 GVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP-----RSNTMKMGVCKNELAPA 377

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           L  AD   +         P ++       +       +    +   ++     D ++V  
Sbjct: 378 LGRADEVYLYQPQH---IPWQVVEVAEACVQPAHWSADLDTLVDMIVKNAQPGDHILVMS 434

Query: 467 KG-----HE 470
            G     HE
Sbjct: 435 NGGFGGIHE 443


>gi|268590480|ref|ZP_06124701.1| FolC protein [Providencia rettgeri DSM 1131]
 gi|291314159|gb|EFE54612.1| FolC protein [Providencia rettgeri DSM 1131]
          Length = 429

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 117/390 (30%), Gaps = 32/390 (8%)

Query: 99  RKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +   A ++    P   ++ VTGT+GK +    ++ I   SGL          I    
Sbjct: 33  LERVGQVARKMNLTQPAPKVITVTGTNGKGTTCHTLESIFMASGLKVGVYSSPHLIRYTE 92

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG------------LDQHRLDGIKLI 205
           +        P      +          +S+    +G            LD   L+     
Sbjct: 93  RVRIQGQELPESDFCEVFATIEAQRADISLTYFEYGTLAALQLFKQAKLDIVILEVGLGG 152

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  D      T  A  +      +        A I+  + Y          +  
Sbjct: 153 RLDATNVV-DADIAAITSIALDHTDWLGADREHIGYEKAGIFRKNHYGVVGEPDMPASIA 211

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIA 324
           +V        F               +     +++     P         AL      + 
Sbjct: 212 QVAEQLGTQLFRRGTDWQYSEQANSWSWKSSQREWHDLPLPNVPLANAATALGVVSCLLE 271

Query: 325 IGIDSALVLEHLEKLH-----VVPGRFEFVGTNSRGGRIYVDYAHTSNS---LEMILKNI 376
           I  D A  +             +PGRF+ +G       + +D AH  ++   L   L  +
Sbjct: 272 IDADIAQKVTESAIHQGLKSAQLPGRFQIIGEKPL---MILDVAHNPHAAGYLVSKLAAL 328

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
               + RI+ V G  GD+D             L+         P +E      A++   +
Sbjct: 329 PETKNRRILAVVGMLGDKDIKG------TLECLSQQVTDWYLAPLTEFRGADVAQLSQYL 382

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           P   +  +  +A + A    N+QDV+VV G
Sbjct: 383 PTANQFESVEKAWQQACVDANEQDVIVVCG 412


>gi|206900214|ref|YP_002250973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
 gi|206739317|gb|ACI18375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
          Length = 456

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 103/286 (36%), Gaps = 26/286 (9%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SS  L+   ++  +     F N+  DH+D +     Y  AK R+F     ++  
Sbjct: 160 YFVLEISSFQLED--IEEFRPFISLFINIYPDHLDRYSNMDEYILAKARIFMNQKKEDYA 217

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + +  +     ++K A +   R L  G+              NK    +S      +  
Sbjct: 218 ILNHDQEE----IVKLAKHYEVRKLFFGFNKHEEEGLFYEEDKNKIFYNLSDRRGFLNIP 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +     V N + +A + + +G+   ++ +  E+   +P   + +G  +    +    A
Sbjct: 274 KGIWNRILVNNFMASALVGLLLGVREEVIEKTGEEFQGIPFALQKIGEINGRIFVNDSKA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               S    +K+I +      I++   G +++   + +   I        I+  +     
Sbjct: 334 TNPISTISAIKSINS-----PILLILGGRNKNFDFQELFENIKKTTVKALILIGE----- 383

Query: 424 DPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAIEMLNKQDVLVV 464
                  E++  +    +       +   A++ A EM    DV+++
Sbjct: 384 -----TKEVMKNLSEEYDIPYVLSDSLESAVKKAYEMSQPGDVILL 424


>gi|188587819|ref|YP_001919625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum E3 str. Alaska E43]
 gi|226711898|sp|B2UXV7|MURD_CLOBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|188498100|gb|ACD51236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 458

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 114/358 (31%), Gaps = 43/358 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I  +TG+ GK++  + + +I Q  G  ++  G               TP   
Sbjct: 111 FVRYCKAKIYGITGSDGKTTTTTIISKILQEEGYKTWVGGNIG------------TPLFA 158

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            + +  +         V +E SS  L       + +     TNL  +H+D H+  Q Y +
Sbjct: 159 QIEEIKAEDR------VVLELSSFQL---MTMNLPMDIAVCTNLAPNHLDMHKDMQEYID 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F       +  +            +     G    + G   +F   ++V      
Sbjct: 210 AKKNIFLYQGSTNTLVVN----------RENEITYGFEAEAKGEVREFSSKREVKEGAYY 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   + + GK+      +           +AA +     +    + +  E  + V  R E
Sbjct: 260 KDGILYLSGKEVCKKDNIVIKGMHNVENYLAAFIATKDDVSIENMKKVAESFNGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V   +         A + N     LK        + +++   G D+     P+      
Sbjct: 320 LVREINGVKYYNDSIASSPNRTLAGLKAFD-----KKVILIAGGYDKHLLFEPL-ANEGY 373

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--GIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
                 I+       E  + +  ++    GI     E     EA++ A ++  + D++
Sbjct: 374 PYIKELILLGQT--KEKIKDVFKDLEASKGIKINISEVSTLEEAVKKAQDLAKQGDII 429


>gi|325663714|ref|ZP_08152118.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470207|gb|EGC73440.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 459

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 113/354 (31%), Gaps = 30/354 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I +    + +    + L    +       +  +AV+GT GK++  
Sbjct: 72  VVVYTAAVHADNPEFIAAKEHQIPMLTRAELLGQLMTNY-----KTPIAVSGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I   +G +   I     +     + R+               S            
Sbjct: 127 SMISHIL-LAGDTDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNSFLDFL------- 178

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G   N+  DH+D+ +      ++    F  LLP +   II ++ 
Sbjct: 179 -------------PKIGIILNVEEDHMDFFKDLDDIRHS-FHRFAALLPNDGTLIINSEI 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +  ++++   +                   +   + N     I    K       + GE 
Sbjct: 225 SQYEQIIAGLNCNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL A      +GID   + + L        RFE+ GT   G  I  DYAH    +E
Sbjct: 285 NVSNALSAIITGTLLGIDLEKIKKGLLSFTGTDRRFEYKGTLD-GVTIIDDYAHHPTEIE 343

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             L   +      I  +F      R +       + AL LAD  I+ D     E
Sbjct: 344 ATLSAAQHYPHREIWCIFQPHTYTRTKAFFHEFAQ-ALTLADHVILADIYAARE 396


>gi|227499510|ref|ZP_03929617.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227218389|gb|EEI83640.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 461

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 118/406 (29%), Gaps = 40/406 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSS 128
            +V + A    +          + VV  TR  FL            +N +AV+G+ GKS+
Sbjct: 73  LVVYTDAILDDNEELIAAKKLSVPVV--TRGVFLGALMRNY-----KNSIAVSGSHGKST 125

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S + +I   S   +  +     +     + R+ +   +                    
Sbjct: 126 TTSMISKILMHSDKDATIL-LGGELEEMKGNVRVGSEEYLVTEACEYK------------ 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                     +           N+  DH+DY++  +   N                    
Sbjct: 173 --------GNIRYYYPQTLIVLNIDEDHLDYYKDLEDIVNTFKEYLSNQDENSMTITNLN 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +D                              +     + +       G    F   + G
Sbjct: 225 EDNNRLIFDSVKGRLITYAQDNEEADYNAFNIQFDNDGHPEFDLKFANGSIEHFKLGVIG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA+ +       GI    + E++ K   +  R + +G       I  DY H  + 
Sbjct: 285 RHNINNAMASIIATYENGISIKTIKENIVKYTGLDRRMQVIGH-VSDATIMTDYGHHPSE 343

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE--D 424
           +++ +  +   T GR+I V+       + K  +  +        D  IVTD     E  D
Sbjct: 344 IKVTVDALAEHTKGRLICVW-QPHTYSRTKT-LFNEFLNCFDSCDEVIVTDIYAAREKFD 401

Query: 425 P----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           P    + +   ++             E      +++ K D+++  G
Sbjct: 402 PTIHSKDVVDALVKKGINAKYISQFEECKDYIEKIIKKDDLVLTTG 447


>gi|26988069|ref|NP_743494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida KT2440]
 gi|38258004|sp|Q88N78|MURD_PSEPK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24982793|gb|AAN66958.1|AE016324_8 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           KT2440]
          Length = 450

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 123/374 (32%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 87  ALQQAAARGVKLSGDIELFARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNL 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T               + L      L         +E SS  L+    D +     +  
Sbjct: 147 GTP-------------ALDLLADDIEL-------YVLELSSFQLET--TDQLNAEVATVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +       G    + 
Sbjct: 185 NISEDHMDRYSGLPAYHLAKHRIFRGARQ----VVVNRQDALSRPL----PVEGRPCWTF 236

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 237 GLNPPDFKAFGLREVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFE 296

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V   +         A    +    ++ +     G+  +V   
Sbjct: 297 PMLEALREFGGLAHRCQWVRERNGVNWYDDSKATNVGAALAAIEGLGADIEGK--LVLIA 354

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGD    +   + +         ++        D E++   +   +P  +      +A++
Sbjct: 355 GGDGKGAEFTALREPVKRFCRAVVL-----LGRDAERLAEALGDAVP-LVRVKTLDDAVQ 408

Query: 451 TAIEMLNKQDVLVV 464
              E+    D +++
Sbjct: 409 QCAELAQAGDAVLL 422


>gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
          Length = 413

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 134/401 (33%), Gaps = 61/401 (15%)

Query: 67  GAEAIVVSSAYSLQDF--SATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           G  A+V S     ++       R+  P+   V            R       + ++VTGT
Sbjct: 40  GIAAVVKSPGVPPRNPLLEKAKRAGIPVYGEV--------ELGYRFS---SGSFISVTGT 88

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GKS+  + +    + SG  SF  G        +     TT                   
Sbjct: 89  NGKSTTTAVIYHALKLSGRESFIGGNYGIP--LSTFALDTTEESFT-------------- 132

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             ++E SS  ++   L   +     F N+  DH++ + + + Y  AK+RL    L     
Sbjct: 133 --ALELSSFQIED--LTSFRSRVSVFLNVTPDHLNRYSSFEEYREAKLRL----LDFSDC 184

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   K +  +           G     +          + ++ +    +     
Sbjct: 185 AVVNGDDPSFKHLKGKL----------GIYTFSVSTDSGADARVEGELLVFSGYRIPYRE 234

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G   + N L A      +G+    + E  +    +P R E VG       +    A
Sbjct: 235 LPLKGIHNLENYLAALVALAVVGLSEEEIYEGFKAFKGLPHRCEVVGRKGGVVFVNDSKA 294

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++++  L++       R +V+   G D+    + +   +   +  +  +       E
Sbjct: 295 TNPDAMKKALESF------RSVVLIAGGSDKGLDFKELKPLVKSRVKALVAI------GE 342

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              K+  E        +   +  EA+  A  +   + V+++
Sbjct: 343 TAGKLV-ETFKEETYVLTASSMEEAVERAYALAGDEGVVLL 382


>gi|299133064|ref|ZP_07026259.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
 gi|298593201|gb|EFI53401.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
          Length = 1310

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 63/429 (14%), Positives = 122/429 (28%), Gaps = 42/429 (9%)

Query: 50  VGNK-EDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
            G     GH         GA  +V S A    +      +    + +    + L L    
Sbjct: 48  KGATVFHGH-HADHV--NGAGMVVYSDAIPFSN-PELAEARLRQIPIAKRAQCLGLLLEH 103

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +AV+G+ GKSS  + +  I + SG     +    +        R       
Sbjct: 104 ------SRAVAVSGSHGKSSTTTMIANILRASGQDVSHVVGAPSECLDNIQGRCGASDIF 157

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                 ++ +                    L  +        N+  DHI+++ + +    
Sbjct: 158 VAEACEAFQN--------------------LAPLSPDIALILNIDDDHIEHYGSVEKLHG 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A       +      A+I   +      +  +  A                         
Sbjct: 198 AFRDFAGRIRNGG--ALIVNGEDARARDIAASAIAPVTTFGFAAGFDVHAAHIAMDGGGS 255

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               I+   +       +PG   + NAL     C+A+ +  A +    E+   V  R++ 
Sbjct: 256 TFSVIAYGAELGTLRLKVPGRHMIGNALACVAACLALDVSFAGIQRGFEQFTGVSRRWQM 315

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL- 407
            G    G R+  DYAH    L   L+  R I +    +            R ++G+    
Sbjct: 316 HG-EVHGVRLIDDYAHHPTELRACLETARLIAAHSGSLCIAFQPQLYSRTRRLLGEYVEV 374

Query: 408 -DLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
               D   + + +   E          +   +           +  E ++    + +  D
Sbjct: 375 LKGFDRIGLVEIDGAGEKNTFGVSVHHLADTLREAGKTVCAFPDAGELLQNISSLASTGD 434

Query: 461 VLVVAGKGH 469
            L+ AG G+
Sbjct: 435 TLIFAGAGN 443


>gi|284046367|ref|YP_003396707.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
 gi|283950588|gb|ADB53332.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
          Length = 552

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS 381
           I  G+  A V   L ++     R   +   + G  +  D Y          L  +R   +
Sbjct: 400 IGHGLALADVARALGRVTPPDHRLAPIVNRAAGIVVIDDSYNANPEGAAAALGVLRDHPA 459

Query: 382 GRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            R ++V       G R+Q +   +G++A  +ADIAI+     R ED              
Sbjct: 460 TRRLLVTPGMVELGAREQEENRRLGELAAGVADIAIL--IGARGEDVAAGMRAAGAPEER 517

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +   A     E+    DV++
Sbjct: 518 ILVLPDGPAAHAKVAELTRSGDVVL 542


>gi|330448820|ref|ZP_08312467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493011|dbj|GAA06964.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 450

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 106/359 (29%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ AS +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVMAVSGTHGKTTTASMLAWILEDCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLKAIQ---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P           + +      GC        G      +          
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKGVKNIDETLEMGCWSELEYIGGDGHWRAEKHREDGSVFD 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       +PL G+  V NAL+A      +G+   L  E L K      R E  G 
Sbjct: 261 VYLDGDNVGTVRWPLVGDHNVNNALMAIAAARHVGVTPDLACEALAKFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
            + G  +Y D+AH   ++E+ L  +R  +   RI+ V     +  + G        +L  
Sbjct: 320 EANGVTVYDDFAHHPTAIELTLGGLRAKVGDSRILAVLEPRSNTMKLGVHKDDLAPSLHA 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD             P  I     EI            +  E ++  +E     D ++V
Sbjct: 380 ADEVFFFQ-------PPNIPWSVEEIAQQCSQPAYSSDDLDELVKRIVEQAKPGDTILV 431


>gi|229169199|ref|ZP_04296913.1| Folyl-polyglutamate synthetase [Bacillus cereus AH621]
 gi|228614265|gb|EEK71376.1| Folyl-polyglutamate synthetase [Bacillus cereus AH621]
          Length = 433

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 91/309 (29%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAIYYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           ++V K  H +   +            K 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVKNEEALQVIQKVAKENHASLYELGKQFTTLHKHSNKD 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                           +         G   +    V         + +   ++   +   
Sbjct: 239 GEHFDFDCPFASFENVRISMKGIHQVGNAALALMAVMYLKTYLSFLINEEEMKVGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVGAHYKKKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   +  EAI T ++M+ 
Sbjct: 354 -MVGQLEKVADEIIFTT----FAFDRAISADKLASYSQQESKLVFEDWKEAIDTKVDMIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 EHDVFIITG 417


>gi|33863701|ref|NP_895261.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9313]
 gi|60390535|sp|Q7V5V5|MURD_PROMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33635284|emb|CAE21609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 460

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 22/276 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A           +A+TGT+GK++V   +  + + +GL +   G              
Sbjct: 98  GEMAVAWRSLSHLPWIAITGTNGKTTVTHLLNHVLESNGLRAPMGGNVGHA--------- 148

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  +A      ++Q    + +E SS+ ++      I    G +TNL  DH++ H T
Sbjct: 149 ----AAEVALKWRQPNAQRPDWLVMELSSYQIEA--APEIAPRMGIWTNLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 A   +   LL +    I   DD   +                           +
Sbjct: 203 LD----AYRTIKRGLLERSEIRIFNGDDPDLRSQRSSWDKGLWVSSEGPGTANHRADFWI 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A    ++   ++          +PG+  + N L+        G+ +  +   L     V
Sbjct: 259 DAEGLVREPQGALFAAS---ALAMPGQHNLQNLLLVTAAARQTGLPAKAIEASLRSFPGV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           P R E +G   +        A   ++  + LK +  
Sbjct: 316 PHRLEQLGHIQQMSVYNDSKATNYDAACVGLKAVPP 351


>gi|145633131|ref|ZP_01788863.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145635590|ref|ZP_01791288.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148826248|ref|YP_001291001.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229844906|ref|ZP_04465044.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
 gi|166224693|sp|A5UCW7|MURC_HAEIE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|144986357|gb|EDJ92936.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145267152|gb|EDK07158.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148716408|gb|ABQ98618.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229812287|gb|EEP47978.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
          Length = 475

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 119/377 (31%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA    +    A+ +   P++      + L+      +G  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN+  DH+D ++       A    
Sbjct: 173 EADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +                 I   +           I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  + L  +PG+    NA  A  +    GID+  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAIAKEEGIDNEAILEALADFQGAGRRFDQLGEFI 334

Query: 354 RGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           R     R+  DY H    + + +K  R     + IV+        + +       ++   
Sbjct: 335 RPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 409 LADIAIVTDDNPRSEDP 425
             D  I+ D     E P
Sbjct: 395 -VDALIMLDVYAAGEAP 410


>gi|163856170|ref|YP_001630468.1| cyanophycin synthetase [Bordetella petrii DSM 12804]
 gi|163259898|emb|CAP42199.1| cyanophycin synthetase [Bordetella petrii]
          Length = 857

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 122/369 (33%), Gaps = 24/369 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AV GT+GK++       +   SGL     G T++   +     + +        A   L
Sbjct: 474 VAVAGTNGKTTTVRLTTHLLAGSGLRV---GMTNSDGVYIGARSIDSGDCSGPRSARRVL 530

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY--HQTQQAYFNAKMRLFE 235
           +  GV     E +  G+ +  L   +      TNLG        + +         R+  
Sbjct: 531 AHPGVDAAVFETARGGILREGLAFDRCDVAIVTNLGMGDHLGLGYISTVEDLAVVKRVIV 590

Query: 236 ELLPKESPAIIYADDAYSKEVMKRA------------HNAGCRVLSVGYQGKFIHLKKVC 283
           + +     A++ A D    ++                H       + G++  +     + 
Sbjct: 591 QYVHAGGTAVLNATDPIVADMASACPGSVTFFSSDPAHPLIGTHRAQGHRVVYRDGPDIV 650

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           A     +V I++          +  +     A VAA   + +                  
Sbjct: 651 AAQGDAEVRIALADIPLTHGGAIAFQVDNAMAAVAAAWSLGVDWPVIRQGLAGFISDAQT 710

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
               F   + RG  +  DY H  ++++ +++ +  + + R  VV    GDR         
Sbjct: 711 VPGRFNMFDYRGATVIADYGHNPDAIQALVQAVEALPARRRSVVISGAGDRRDDDLRRQT 770

Query: 404 KIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIE------AIRTAIEML 456
           +I  D  D  ++ +D   R     ++   +  G+ G     +  E      AI TA+  L
Sbjct: 771 EILGDAFDDVVLYEDQCQRGRADGEVLTLLRQGLAGAQRARHVEEIRGEFLAIDTALARL 830

Query: 457 NKQDVLVVA 465
              D+ +V 
Sbjct: 831 EAGDLCLVL 839


>gi|16126795|ref|NP_421359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus CB15]
 gi|221235575|ref|YP_002518012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus NA1000]
 gi|30316113|sp|Q9A597|MURD_CAUCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766042|sp|B8H096|MURD_CAUCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13424123|gb|AAK24527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus CB15]
 gi|220964748|gb|ACL96104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus NA1000]
          Length = 471

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 74/448 (16%), Positives = 133/448 (29%), Gaps = 89/448 (19%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNT--------------------------PILVVDN 97
           IA GA+  +     + ++ +A                                P   V+ 
Sbjct: 29  IAGGAKVALWDEKPASREAAAAEGFAVVDLQAADWSQFAALMLSPGVPLSHPKPHWTVEK 88

Query: 98  TRKF----------LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
            R             +   +         I+A+TGT+GKS+  + +  +C  +G  +   
Sbjct: 89  ARAAGVEVLGDVELFARTVNAAPAHKRPKIIAITGTNGKSTTTALIGHLCASAGRDTRVG 148

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G         +D        + L                   SS+ LD      +K  A 
Sbjct: 149 GNIGLGVLGLEDMHGGAVYVLEL-------------------SSYQLDL--TSSLKPDAV 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH+D H     Y  A  R       K   AII  DDA+ +++      A  R 
Sbjct: 188 VLLNISPDHLDRHGGMDGY-IAAKRRIFLNQGKGDTAIIGVDDAWCQQICTEITAANRRT 246

Query: 268 LSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +     G      +  +  +         VE  D      LPG     NA  A     AI
Sbjct: 247 IWPISAGKAMGRGVYALQGVLYDATGERVVEVADILRARSLPGRHNWQNAAAAYAAARAI 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GR 383
           GI     ++ L     +  R E VG   +   +    A  +++    + +        G 
Sbjct: 307 GISMQDAVDGLMTFPGLAHRMETVGKIGKVRFVNDSKATNADAARQAMSSYPKFYWIAGG 366

Query: 384 IIVVFGCGGDRD----QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
           +    G    +D      K  ++G+ A   +                      + G    
Sbjct: 367 VAKAGGIDDLKDLFPRIAKAYLIGEAAEPFSWT--------------------LAGKAEC 406

Query: 440 IEKGNRIEAIRTAIEML---NKQDVLVV 464
           +  G   +A++ A        ++ ++++
Sbjct: 407 VLSGTLEKAVQQAYADAAASGEEAIVLL 434


>gi|253564353|ref|ZP_04841810.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_2_5]
 gi|251948129|gb|EES88411.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 3_2_5]
          Length = 464

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 129/416 (31%), Gaps = 48/416 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP+A    A  +VV +    Q+ +           +    + L               L 
Sbjct: 63  IPEACKDKATTLVVLTPAVPQEHAELTYFRDNGFEIQKRAQVLGTITR------SSKGLC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ ++    +  +S +            ++  +  L++ SP  + +A  +  S
Sbjct: 117 VAGTHGKTTTSTMTAHLFHQSHVGCTAF-LGGISKNYGTNLLLSSTSPYTVIEADEFDRS 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +                      T    DH+D + T +  +      +  L+ 
Sbjct: 176 FHWLSPYMSV-------------------ITATDPDHLDIYGT-EQAYLESFEHYTTLIQ 215

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                II    +   +V +             +  + I +       +     I ++   
Sbjct: 216 PGGALIIRKGISLQPKVKEGVKMYTYSRDEGDFHAENIRIGNGEIFIDFVGPDIRIDN-- 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +P    + N + A  L    G+    + + +     V  RF+F   N+R     
Sbjct: 274 --IQLGVPVSINIENGVAAMALAHLNGVTPEEIKQGMASFRGVDRRFDFKIKNNR-IVFL 330

Query: 360 VDYAHTSNSLEMILKNIRTITSGRII-VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
            DYAH  + ++  + ++R +   + I  VF      R +            L D  I+ D
Sbjct: 331 SDYAHHPSEIKQSVMSMRELYRDKKITAVFQPHLYTRTRDFYKDFADSLS-LLDEVILVD 389

Query: 418 DNPRSEDP------EKIRAEIIHGIPGF----IEKGNRIEA--IRTAIEMLNKQDV 461
             P  E P        I   +  GI        E  + ++A  I   I +    D+
Sbjct: 390 IYPAREQPIPGVSSRLIYDNLRPGIEKSMCKKEEILDVLKAKHIEVLITL-GAGDI 444


>gi|229111928|ref|ZP_04241472.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock1-15]
 gi|228671492|gb|EEL26792.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock1-15]
          Length = 433

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++           V     GL   R D   +I  
Sbjct: 102 KLVKPVVEKLDETDLGEATEFEIITVMAICYFGKFNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              + +          +               + +         G   +    V      
Sbjct: 221 LYEMGNHFTALHKQSSEDGEEFDFTCPFASFEDVRITMKGSHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +    +     GRFE +        I +D AH    +E ++K I      +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTIEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIAENDVFIITG 417


>gi|118590891|ref|ZP_01548291.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
 gi|118436413|gb|EAV43054.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
          Length = 466

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 87/282 (30%), Gaps = 17/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++        A  +  E +       +          +     
Sbjct: 173 LPADVAIVTNIDPEHLDHYGDFAGVRAAFRQFVENVPFYGFAVMCLDHPEVQTMIGTIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNAL 316
                  +            +    +   VT+         +  +   P+PG   V NA 
Sbjct: 233 RRVVTYGANPQADVRYTDVSMDGGKSMFSVTLRDRRSGQVIELNNLTLPMPGLHNVSNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+ +  + + +     V  RF   G    G +++ DY H    ++ +L   
Sbjct: 293 AAIAVASQLGVGADELRKGIAAFGGVKRRFTHTG-TVGGVQVFDDYGHHPVEIKAVLHAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA--EI 432
           R  T G++I V      R      +    +     AD  I+       E P +  A  ++
Sbjct: 352 RESTKGKVIAV--MQPHRYTRLHSLFDDFSNCFNDADAVIIAPVYAAGEQPIEGAAHTDL 409

Query: 433 IHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           + G+               +      ++    D +V  G G+
Sbjct: 410 VSGMKTRGHRNVQAIEGPEDLPALIKDLAEPGDFVVCLGAGN 451


>gi|317484864|ref|ZP_07943756.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316923910|gb|EFV45104.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 455

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 131/404 (32%), Gaps = 46/404 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
           A    +  A  +   P++     R   L+       G      +A+ GT GK+S  S   
Sbjct: 76  AEDNPEVVAARQKGIPVI----PRAEMLAELMRLRTG------IAIAGTHGKTSTTSLTA 125

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I   + L    I     I+++  + RL     +      S                   
Sbjct: 126 AIFDAASLDPTVI-IGGRINAYGANARLGQGEYLIAEADESD------------------ 166

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  +  I    TN+ RDH+D++  Q+A   A    F   +P     ++  DD   +
Sbjct: 167 --GSFLCLLPIINVVTNVDRDHLDHYGNQEAIDEA-FVSFMNQIPFYGLNVVCGDDPGVE 223

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            ++ R              G  I  + +      +        +  +     PG   + N
Sbjct: 224 RLLPRVKRPVVTYGFGS--GNHIRAEVLECGVINRFKVFIKGEELGEVTLRQPGRHNILN 281

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A G+ +  GI+    +E L +   V  RFE          +  DY H    +   L 
Sbjct: 282 ALAAIGVALDAGIEPHFCIEGLARFGGVGRRFE-HKGEKNDILVVDDYGHHPVEIAATLA 340

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIR--A 430
             RT    R +VV      R    + + G+    L   D  ++T+  P SE P       
Sbjct: 341 TARTAYPDRRVVV-AFQPHRFSRTQALFGEFCHVLGTVDKLLLTEIYPASEKPIPGVNGQ 399

Query: 431 EIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +  GI            N  E +    ++L   D+ +  G G+
Sbjct: 400 NLAQGIRQVSDADVSYFQNFDEMVAALPDILKPGDLFLTIGAGN 443


>gi|225866438|ref|YP_002751816.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus 03BB102]
 gi|225790168|gb|ACO30385.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus 03BB102]
          Length = 433

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 110/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEDAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENRAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K +++    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVKSHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +A+  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIANEIIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T IEM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKIEMIGENDVFIITG 417


>gi|299821556|ref|ZP_07053444.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
 gi|299817221|gb|EFI84457.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
          Length = 455

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 127/403 (31%), Gaps = 35/403 (8%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT--RKFLSLFASRLYGKHPENILAVT 121
           + QG + I  S    L D    +    P +  +N   +K L L            I  +T
Sbjct: 53  LEQGIKVICGSHPIELLDEGFELVIKNPGIPYNNPMIQKALQL-----------KIPVIT 101

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
                  ++         +   +        + +  Q +       I    ++    +  
Sbjct: 102 EVELAYQISDAPIIGITGTNGKTTTTTIIHHMLNERQADNSLLAGNIGFPASMVASKALP 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             ++++E SS  L    +D         TN+   H+DYH  +  Y  AK ++ +     +
Sbjct: 162 EQYITMELSSFQL--MGIDTFHPHISVITNIYEAHLDYHADRDEYVQAKWKIQKNQTADD 219

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I + D    K + K+         +    G   +++    +        + E     
Sbjct: 220 ILVINW-DQEELKTLTKKTKAQIVPFSTTQKLGLGSYVQNGKLM-------FNDEIVGER 271

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG+  + N L +  +   IG+ +  +++ L+    VP R +FV            
Sbjct: 272 ADILLPGDHNLENILASIAVAKTIGVSNEQIMQVLKTFKGVPHRTQFVTEWHGRKFYNDS 331

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A    + +  LK  +       +V+   G DR      ++           +       
Sbjct: 332 KATNILATQSALKGFKE-----PVVLLAGGLDRGNEFDELLPFF--QHVKALVC-----F 379

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E  EKI               N   A+  A E  +  DV+++
Sbjct: 380 GETAEKIGRIGKQSGTEVFYVENVEAAVPVAFEASSPGDVILL 422


>gi|15615810|ref|NP_244114.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus halodurans C-125]
 gi|20139205|sp|Q9K7W1|MURC_BACHD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|10175871|dbj|BAB06967.1| UDP-N-acetylmuramate-alanine ligase [Bacillus halodurans C-125]
          Length = 433

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 64/348 (18%), Positives = 97/348 (27%), Gaps = 43/348 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS+AYS +            L + +   FL  F  R         +AVTG+ GK+S  
Sbjct: 64  VVVSAAYSDEHEEVVAAKEQG-LEIQSYPTFLGEFIQRFTS------IAVTGSHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +SF IG        A D+           +                  
Sbjct: 117 GLLSHVLGSHCPTSFLIG--DGTGKGAADSHYFVFEACEYRRHFLNYR------------ 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A       +  +   AI+   D
Sbjct: 163 -------------PDYCIMTNIDFDHPDYFDDINDVFSAFQE----MAMQVKKAIVACGD 205

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                +     N             F                        DF  P  G+ 
Sbjct: 206 DEQ--LQGIHANVPVVYYGFNEDNDFQARNIEVTSEGTHFQVFVRNNHYGDFTIPRFGKH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V N+L    LC    I   ++   L+    V  RF        G  +  DYAH    + 
Sbjct: 264 NVLNSLAVIALCHYENIPVEVLARELKTFEGVKRRFTEKTLG--GQILIDDYAHHPTEIS 321

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD 417
             ++  +     R +V         + K  +     AL  AD   + D
Sbjct: 322 ATIEAAKQKYPDRPVVAIFQPHTFSRTKAFLHEFAEALKQADHVYLCD 369


>gi|225011611|ref|ZP_03702049.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
 gi|225004114|gb|EEG42086.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
          Length = 445

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/290 (17%), Positives = 93/290 (32%), Gaps = 16/290 (5%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             ++ +   +  +E SS  LD   +          TN+  DH+D +      +       
Sbjct: 145 RQVAQEQFDYYVLEISSFQLD--NIHDFAPHISVITNITPDHLDRYSYSLENYIKSKFKI 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   ++   +  ADD     + +       +   V Y  +           +      +
Sbjct: 203 IQNQTQKDFFLFNADDPI---LKEAISEHKNKASKVPYGFEVKREGSTHENDHLILKHRN 259

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                    F L G   + NA+ AA +   + I    + E L      P R E V T  R
Sbjct: 260 KNTMIDTTQFTLTGRHNLLNAMAAATIGSLLDISKDTIRESLTHFKGAPHRMEKVLTIQR 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A     +      + +I +  I +V G     D      +  +    A   I
Sbjct: 320 VSYINDSKATN---VNATYFALESIDTPLIWIVGGVDKGNDYT---TLLPLIRTKAKAII 373

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   ED E ++         FIE  +  EA++ A ++   +D +++
Sbjct: 374 C-----LGEDNEALKNTFERVTDIFIETQSMSEAVKIAHKVAAPKDTVLL 418


>gi|160946328|ref|ZP_02093537.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
 gi|158447444|gb|EDP24439.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
          Length = 441

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 97/299 (32%), Gaps = 26/299 (8%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +       +S   T   +E SS  L  H ++  K    S  N+  DHID+H +   Y 
Sbjct: 140 IGIGMLWEIFNSDDETVNIIEVSSFQL--HNIENFKPYIASIGNITPDHIDWHGSFDNYI 197

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K+++F+ +            D     ++        ++         I L    A   
Sbjct: 198 EDKLKIFKNM------------DKNGNLILNIDDEILGKINVENTNVTKISLNNKNADFY 245

Query: 288 KQQVTISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +       K         + G+    N L++  +C   GI    ++   +    V  R
Sbjct: 246 LSENNFYHNDKKLFSMKDLKILGKHNAQNVLISLAICYNYGIIMDTIIFACKNFGGVEHR 305

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            EFV   +             +S    ++ +      + I++   G D++    P+    
Sbjct: 306 IEFVRELNGIKFYNDSKGTNVDSTIKAIEALE-----KPIILIVGGYDKNVDFNPLFESF 360

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  + +V D   +  D  K      +G    I   +  E +    E+    D +++
Sbjct: 361 NGKVKTLILVGDTKYKFYDSAK-----KNGFENNIIVNDYREVVEKCFEIAESGDNVLL 414


>gi|218661509|ref|ZP_03517439.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli IE4771]
          Length = 256

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 12/174 (6%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+ DY 
Sbjct: 65  MPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYG 123

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    ++ +L+  R    GRII V      R      +  + A     AD  ++      
Sbjct: 124 HHPVEIKAVLRAAREACKGRIIAV--HQPHRYSRLASLFEEFAACFNDADSILLAPVYAA 181

Query: 422 SEDPEK------IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            ED  +      + + I  G        +  E +     E+    D +V+ G G
Sbjct: 182 GEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPEMVAEVAKPGDFVVLLGAG 235


>gi|167750587|ref|ZP_02422714.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
 gi|167656513|gb|EDS00643.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
          Length = 511

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 116/318 (36%), Gaps = 19/318 (5%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R +++     + G     ++ +TG+ GK+S   +++   +  G     +    + +    
Sbjct: 152 RHYINDAKRIINGLPDLTVVGLTGSYGKTSTKFYLE---KLLGAKYNVLMTPESYN---- 204

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               TT   + +       ++  +    + A + G  +   D +K   G  T++G  H++
Sbjct: 205 ----TTMGVVKV-VRGQLNATHEIFLCEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLE 259

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
             ++       K  L + L  K+    +  D+ Y    + +      +V      G   +
Sbjct: 260 TFKSIDNIIKTKFELADSLPDKDGIIFLNYDNEY----IAKHECNKNKVTYSLGGGTDYY 315

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              +    N  Q T+    ++  F   L G   V N + A  +   +G+  A ++  +++
Sbjct: 316 ADNISVSENGTQFTVHNGNEEKQFATKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKR 375

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQ 396
           L  VP R + +   +    I   +       +  L  +      +I+V       G+++ 
Sbjct: 376 LECVPHRLQIIK-GTNKTIIDDAFNSNPTGAKAALDTLAVFDGFKILVSPGMVELGEKEY 434

Query: 397 GKRPIMGKIALDLADIAI 414
                 G+ A ++ D  I
Sbjct: 435 ELNKRFGEQAAEICDFVI 452


>gi|167035505|ref|YP_001670736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida GB-1]
 gi|166861993|gb|ABZ00401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           GB-1]
          Length = 450

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 124/374 (33%), Gaps = 48/374 (12%)

Query: 101 FLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
            L   A+R                  I+A++G++ KS+V + V ++  ++G      G  
Sbjct: 87  ALQQAAARGVKLSGDIELFARHATAPIIAISGSNAKSTVTTLVGEMAAKAGKRVAVGGNL 146

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
            T               + L      L         +E SS  L+    D +     +  
Sbjct: 147 GTP-------------ALDLLADDVEL-------YVLELSSFQLET--TDQLNAEVATVL 184

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +    AY  AK R+F          ++   DA S+ +       G    + 
Sbjct: 185 NISEDHMDRYSGLPAYHLAKHRIFRGAKQ----VVVNRQDALSRPL----PVEGRPCWTF 236

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G          +  +  ++ +    +         + G     NAL A  L  A G+   
Sbjct: 237 GLNQPDFKAFGLREVDGEKYLAFEFQALMPARELKVRGAHNQSNALAALALGHAAGLPFE 296

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +LE L +   +  R ++V   +         A    +    ++ +     G+  +V   
Sbjct: 297 PMLEALREFGGLAHRCQWVRERNGVNWYDDSKATNVGAALAAIEGLGADIEGK--LVLIA 354

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           GGD    +   + +         ++        D E++   +   +P  +   +  +A++
Sbjct: 355 GGDGKGAEFTALREPVKRFCRAVVL-----LGRDAERLADALGDDVP-LVRVKSLDDAVQ 408

Query: 451 TAIEMLNKQDVLVV 464
              ++    D +++
Sbjct: 409 QCAQLAQAGDAVLL 422


>gi|310765084|gb|ADP10034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
           Ejp617]
          Length = 438

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 69/400 (17%), Positives = 135/400 (33%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L   S    +   + ++ +              +    I+A+TG++GKS
Sbjct: 66  ADLIIASPGVALAHPSLMAAAQNGVEIIGDVE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGTGGNIGLP-------------ALTLLQQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH+D +      + A       +    +  ++ 
Sbjct: 158 ELSSFQLET--TSSLHAAAATILNVTEDHMDRYPLGMQQYRAAK---LRIYENATVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V             VG          +        + +  E         L 
Sbjct: 213 ADDAMTMPVRGADARCVSFGADVGDYH-------LTRQQGSTWLRVQGEKVLNTDEMHLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQRVHEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +    +G + ++ G  G   D     R + G       D   +        +
Sbjct: 326 STEAALNGL--HPAGILWLLLGGDGKSADFSPLTRYLQG-------DRIRIYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+       ++     EA++     +   D++++
Sbjct: 377 LAALRPEV------AVQTETMAEAVQQIAARVQPGDLVLL 410


>gi|308048069|ref|YP_003911635.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
 gi|307630259|gb|ADN74561.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
          Length = 486

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 135/416 (32%), Gaps = 47/416 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVS+A   ++          I VV   R+   L+      +G      +AV GT G
Sbjct: 79  ADVVVVSTAIREENPEIRAARERRIPVV---RRAEMLAELMRFRHG------IAVAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K             + L++   G      +F    +L +          +  ++Q     
Sbjct: 130 K----------TTTTSLTASLFGQGGLDPTFVIGGKLNS----------AGTNAQLGLGR 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A +   D   L  ++ +    TN+  DH+D +             F   LP    A+
Sbjct: 170 YLVAEADESDASFLH-LQPMISVVTNIEPDHMDTYGGDINKLYDTFVDFLHNLPFYGVAV 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLF 304
           +  DD   + ++ R                    +    +  + Q T+    +D    + 
Sbjct: 229 LCLDDPGVQVILPRVGRRIVTYGFHPDADV--RAEDFVQVGTRTQFTLHRPNRDPLPLVL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VD 361
            LPG   V NAL A  + +  G++   +   L++   +  RF+  G    G        D
Sbjct: 287 NLPGRHNVQNALAAIAVAMEEGVEDDAIEAALDQFQGIGRRFQQYGEFDTGAGKVLLVDD 346

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDN 419
           Y H  + + + +K  R     R  +V      R    R +       L+  D  ++ +  
Sbjct: 347 YGHHPSEVAVTIKAARASWPDRR-LVMVFQPHRFSRTRDLYDDFCAVLSEVDCLLLMEVY 405

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              ED         +   I       +             + L   DV++  G G+
Sbjct: 406 SAGEDLIPGADSRALCRSIRQRGIDPVYVPGPEGLPALLADQLQDGDVVLTQGAGN 461


>gi|301161366|emb|CBW20906.1| putative UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           fragilis 638R]
          Length = 464

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 126/417 (30%), Gaps = 50/417 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           IP+A    A  +VV +    Q+ +           +    + L               L 
Sbjct: 63  IPEACKDKATTLVVLTPAVPQEHAELTYFRDNGFEIQKRAQVLGTITR------SSKGLC 116

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ ++    +  +S +            ++  +  L++ SP  + +A  +  S
Sbjct: 117 VAGTHGKTTTSTMTAHLFHQSHVGCTAF-LGGISKNYGTNLLLSSTSPYTVIEADEFDRS 175

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +                      T    DH+D + T       +  L      
Sbjct: 176 FHWLSPYMSV-------------------ITATDPDHLDIYGT------EQAYLKSFEHY 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGK 298
                   A        ++     G ++ +        H + +           +  + +
Sbjct: 211 TTLIQPGGALIIRKGISLQPKVKEGVKMYTYSRDEGDFHAENIRIGNGEIFIDFVGPDIR 270

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +    +P    + N + A  L    G+    + + +     V  RF+F   N+R    
Sbjct: 271 IDNIQLGVPVSINIENGVAAMALAHLNGVTPEEIKQGMASFRGVDRRFDFKIKNNR-IVF 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRII-VVFG-CGGDRDQGKRPIMGKIALDLADIAIVT 416
             DYAH  + ++  + ++R +   + I  VF      R +            L D  I+ 
Sbjct: 330 LSDYAHHPSEIKQSVMSMRELYRDKKITAVFQPHLYTRTRDFYKDFADSLS-LLDEVILV 388

Query: 417 DDNPRSEDP------EKIRAEIIHGIPGF----IEKGNRIEA--IRTAIEMLNKQDV 461
           D  P  E P        I   +  GI        E  + ++A  I   I +    D+
Sbjct: 389 DIYPAREQPIPGVSSRLIYDNLRPGIEKSMCKKEEILDVLKAKHIEVLITL-GAGDI 444


>gi|291278997|ref|YP_003495832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
 gi|290753699|dbj|BAI80076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
          Length = 413

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 118/370 (31%), Gaps = 51/370 (13%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           V+N  K +S +         +  + +TG++GKS+      QI  + GL S   G      
Sbjct: 65  VNNKSKVISEYELVFNLVKDKTFIGITGSNGKSTTTFLTSQILNKIGLKSVACGNIGYPL 124

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
            +A                          +  VE SS  +D  R  G  L AG   N+  
Sbjct: 125 GYAI--------------------FDDFDYFVVEFSSFQIDLMR-KGEFLDAGVIINITP 163

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D ++T + Y           L  +        D     V K   +            
Sbjct: 164 DHLDRYKTFENY-----------LKSKVRLSELLKDDGFFVVGKDITSYIANYDLCIDTD 212

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
              + K    +   +   I+V        FPL G+  + N   A  +          V  
Sbjct: 213 FNDYPKLKGDVLYFENFYINVNH------FPLVGKHNLVNLSFALEIVNNFYELKGDVTH 266

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +E L  +P R E V        +        +S +  LK +     G+II++ G   D+
Sbjct: 267 LIEDLKGLPHRCEIVREIDGILFVNDSKGTNVDSTKTALKGL----DGKIILLLGGL-DK 321

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           D     +   I        +         D + I  +I       I      EA  T+ E
Sbjct: 322 DGDFSELNDDI-KKKCKAVVC-----FGRDAKNIYDQI--DFEKKILVNKLKEAFDTSTE 373

Query: 455 MLNKQDVLVV 464
           +    D++++
Sbjct: 374 LAKSGDIVLL 383


>gi|229013672|ref|ZP_04170801.1| Folyl-polyglutamate synthetase [Bacillus mycoides DSM 2048]
 gi|228747594|gb|EEL97468.1| Folyl-polyglutamate synthetase [Bacillus mycoides DSM 2048]
          Length = 433

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 90/309 (29%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAIYYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           ++V K  H +   +            K 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVKNEEALQVIQKVAKENHASLYELGKQFTTLHKHSNKD 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                           +         G   +    V         + +   ++   +   
Sbjct: 239 GEHFDFDCPFASFENVRISMKGIHQVGNAALALMAVMYLKTYLSFLINEEEMKVGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKKKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   +  EAI T ++ + 
Sbjct: 354 -MVGQLEKVADEIIFTT----FAFERAISADKLASYSQQESKLVFEDWKEAIDTKVDRIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 EHDVFIITG 417


>gi|163802645|ref|ZP_02196536.1| fructose-1,6-bisphosphatase [Vibrio sp. AND4]
 gi|159173533|gb|EDP58353.1| fructose-1,6-bisphosphatase [Vibrio sp. AND4]
          Length = 453

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 112/355 (31%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +     + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEVIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D+  ++V++R      +   +    +   L     +   +  
Sbjct: 205 HHLVRTVPGNGLILAPKQDSSLQDVIERGCWTEKQFSGIDGDWQASKL----LVDGSKFE 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 261 VLLQGEKVGIVDWDLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
             +G  +Y D+AH   ++E+ L  +R     + I+           +      IA  L  
Sbjct: 320 EEQGVTVYDDFAHHPTAIELTLGGLRNKVGQKRILAVLEPRSATMKRGVHKNTIAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + I  +          + +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPDDIDWSVQDIAEQCQQ---RAFVEADMDTFVAKIVERAQPSDQILV 431


>gi|320539530|ref|ZP_08039197.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia symbiotica str. Tucson]
 gi|320030383|gb|EFW12395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia symbiotica str. Tucson]
          Length = 454

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 103/362 (28%), Gaps = 42/362 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A  V  + +  G     I       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMVTWVLEACGYQPGFI-IGGVPGNFEVSARLGGSPFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +        +  S   L                NL  DH D     +A        
Sbjct: 161 EYDCAFFDKRAKFMHYSPRTLVMS-------------NLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     +            
Sbjct: 203 QFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQELVGEEGTWCAQKLTPDASCYAVF 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LNGEQVGEVQWALVGEHNMHNGLMAIAATRHVGVQPADACRALGNFINARRRLELCG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC------GGDRDQGKRPIMGKI 405
            G  +Y D+AH   ++   L  +R    G  RI+ V          G       P +G+ 
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRAKVGGTARILAVLEPRSNTLKMGISKHELAPSLGR- 380

Query: 406 ALDLADIAIVTDDNPRSEDPE---KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
               AD   +       + P    ++   +   +       +    +   ++     D +
Sbjct: 381 ----ADEVFL------FQPPNIPWQVAQVVESCVQPAHWSADLDILVEMIVKTTQPGDYI 430

Query: 463 VV 464
           +V
Sbjct: 431 LV 432


>gi|149190169|ref|ZP_01868445.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
 gi|148836058|gb|EDL53019.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
          Length = 486

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 142/437 (32%), Gaps = 56/437 (12%)

Query: 50  VGNKEDGHLFI-PQA--IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSL 104
            G       +I  QA  I   A  +VVS+A   ++          I VV   R+   L+ 
Sbjct: 66  KGATV----YIGHQASNIEN-ASVVVVSTAIDPENQELVAAKELRIPVV---RRAEMLAE 117

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                +G      +AV GT GK++  + V QI   +G+    +     + S   + RL +
Sbjct: 118 LMRFRHG------IAVAGTHGKTTTTALVTQIYSEAGMDPTFV-NGGLVKSAGTNARLGS 170

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              +    A +  S     H+    S                   TN+  DH+D +    
Sbjct: 171 SRIL---IAEADESDASFLHLQPMVS-----------------IVTNIEADHMDTYGGDF 210

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                    F   LP    A++  DD   +E++                   I   +   
Sbjct: 211 DTLKQTFIDFLHNLPFYGQAVMCVDDPVVRELIPSVSRQVITYGFSDDADVRIENYRQDG 270

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              K    +    ++ +    +PG+    NA  A  +     I    ++  +        
Sbjct: 271 QQGKFT-VVRKGRENLEITLNIPGQHNALNAAAAIAVATEDNIADEAIVNAMLGTEGTGR 329

Query: 345 RFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-- 399
           RFE +G    G     +  DY H    +++ +K  R   + + +V+        + +   
Sbjct: 330 RFEHLGEFETGNGKVMLVDDYGHHPTEVDVTIKAARNGWAEKRLVMIFQPHRYSRTRDLY 389

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTA 452
                +     D+ ++ D     E P        +   I   G    +   +   A+ + 
Sbjct: 390 DDFANVLEQ-VDVLVMLDVYSAGEAPIAGADGRSLCRTIRTRGKLDPVFVPDVN-ALPSV 447

Query: 453 IE-MLNKQDVLVVAGKG 468
           +  +L + D+L+  G G
Sbjct: 448 LSNLLQEGDLLLTQGAG 464


>gi|307243621|ref|ZP_07525764.1| bifunctional protein FolC [Peptostreptococcus stomatis DSM 17678]
 gi|306492990|gb|EFM65000.1| bifunctional protein FolC [Peptostreptococcus stomatis DSM 17678]
          Length = 470

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKR 399
            PGR E +          +D AH  +  + ++  I  +       I+V G   D+D    
Sbjct: 298 WPGRMEIL---MDSPLFMIDGAHNLDGAQSLVGEIDRLLGEEWDKILVLGLLADKDVDG- 353

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
             + KI +   D  IVT  +NPR+ D E++   +       I   +  +A+  + ++
Sbjct: 354 --IVKILVPRFDRVIVTLPNNPRAMDVEELAYRVGMYCQDIICIEDIGQAVDYSFDL 408


>gi|312874454|ref|ZP_07734484.1| bifunctional protein FolC [Lactobacillus iners LEAF 2052A-d]
 gi|311090066|gb|EFQ48480.1| bifunctional protein FolC [Lactobacillus iners LEAF 2052A-d]
          Length = 420

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I  +  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIINLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ + + P  I A+  +     ++  N   A++ A +     D++VV G
Sbjct: 362 DHLQRKLPVAILAQ--NFNNHVMQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|291008557|ref|ZP_06566530.1| folylpolyglutamate synthase [Saccharopolyspora erythraea NRRL 2338]
          Length = 458

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V        + VD AH  +    + + +    +  R++ V G  GD+D   R +
Sbjct: 311 PGRLERVRAAPS---VLVDAAHNPHGARALAEALSSEFSFRRLVAVVGVLGDKDV--RGV 365

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEK---IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           + ++   + ++ +  + +PR+ DP++   I  +I  G    + +    +A+ TAI+M  +
Sbjct: 366 LAELEPVVEEVVLTRNSSPRAMDPDELASIAKDIF-GPDRIVVEPRLDDAVETAIQMAEE 424

Query: 459 ---------QDVLVVAG 466
                       +V+ G
Sbjct: 425 TTDPSESVSGGGVVITG 441


>gi|225619140|ref|YP_002720366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225213959|gb|ACN82693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 471

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/385 (15%), Positives = 125/385 (32%), Gaps = 39/385 (10%)

Query: 82  FSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  I    PI+     R  K +             N +AVTGT GK++  + V  I + 
Sbjct: 91  ISPGIPHTIPIVEEAKRRNIKIIGEIEFAYNFLPNRNYIAVTGTDGKTTTVTLVHDIIKS 150

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
               +  +G      S   +        I                  +E SS  L+   +
Sbjct: 151 YK-KARLLGNVGNTFSKEIETIEEDEDVI------------------LELSSFQLET--V 189

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           +       +  N+  DH+D ++  + YFN K  +       +   + Y +   +    + 
Sbjct: 190 EKFHAHIAAVLNIAEDHLDRYKDIEDYFNTKKNITINQNKNDFLILNYDNIYTNIWYNEL 249

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             N   ++L+   + KF  +                E         + G+  + N L A 
Sbjct: 250 NGNCKMKLLTFSLKSKFATIYYNEEDEYIY---YENEKLFSIANRKVIGKHNIANILAAV 306

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +C+   I    + + +     +  R E V T +    +    A + NS+   LK+    
Sbjct: 307 LICLKDDIPVEYIEKAVNNFKGIEHRVELVATINGVKYVNDSKATSMNSVMSALKSFD-- 364

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              + I++   G +++     +   I   +  + ++       E  E +   +       
Sbjct: 365 ---KDIILIMGGRNKNIDFTHLNNIINARVKKLILI------GEAAEALSEML--HFENK 413

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVV 464
           I   +  +A   A  +    D +++
Sbjct: 414 IIVRDLTDAFNYASAISINGDTVLL 438


>gi|223041416|ref|ZP_03611619.1| folylpolyglutamate synthase [Actinobacillus minor 202]
 gi|223017674|gb|ACE87886.2| folylpolyglutamate synthase [Actinobacillus minor 202]
          Length = 431

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 117/378 (30%), Gaps = 29/378 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ V GT+GK S   F++    ++GL+         I    +          +  
Sbjct: 46  NPAPYVITVAGTNGKGSTCRFLEVALLKAGLTVGVYSSPHLIRYNERVRINGEVLADHFH 105

Query: 172 KALSYLSSQGV-----THVSVEASSHGLDQHRLDGIKL------IAGSFTNLGRDHIDYH 220
                  ++              S+  L ++    + +           TN+   H+   
Sbjct: 106 IQSFADINEKKTASLTYFEFSTLSALQLFKNAKLDVVILEVGLGGRLDATNIVDPHLAVI 165

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +      A +    E + +E   I          V+         +         +  +
Sbjct: 166 TSIDIDHVAFLGDNREDIGREKAGIFREHIPV---VIGEPDCPNSILTYAKQLQCHVMQR 222

Query: 281 KVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            V   ++ +    S +  D  F   P+P           A L       S  ++      
Sbjct: 223 DVDWHYSVKAERFSWKAADQQFVDLPMPLIPIPNAGTAIAALTQLPFNMSEQIIRETLSE 282

Query: 340 HVVPGRFE--------FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
             + GRF+                 ++ +D  H  ++   + + ++ +  G+I  +F C 
Sbjct: 283 AQMTGRFQTLAASDFAQFSGIMPKAKVIIDVGHNPHAARYLAERLQAVKKGKIFAIFSCL 342

Query: 392 GDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEA 448
            D++      + +   +L D    V  D  R +  E +  +++  +P        N  +A
Sbjct: 343 EDKELSG---IVEPLDNLIDEWFCVGLDCWRGQSGEAVFEKLVKSLPNATACAYENIAQA 399

Query: 449 IRTAIEMLNKQDVLVVAG 466
              A     +QD+++V G
Sbjct: 400 TPIAFNQAKEQDIVLVFG 417


>gi|324019282|gb|EGB88501.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 117-3]
          Length = 445

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 149 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|134097973|ref|YP_001103634.1| folylpolyglutamate synthase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910596|emb|CAM00709.1| folylpolyglutamate synthase [Saccharopolyspora erythraea NRRL 2338]
          Length = 455

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V        + VD AH  +    + + +    +  R++ V G  GD+D   R +
Sbjct: 308 PGRLERVRAAPS---VLVDAAHNPHGARALAEALSSEFSFRRLVAVVGVLGDKDV--RGV 362

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEK---IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           + ++   + ++ +  + +PR+ DP++   I  +I  G    + +    +A+ TAI+M  +
Sbjct: 363 LAELEPVVEEVVLTRNSSPRAMDPDELASIAKDIF-GPDRIVVEPRLDDAVETAIQMAEE 421

Query: 459 ---------QDVLVVAG 466
                       +V+ G
Sbjct: 422 TTDPSESVSGGGVVITG 438


>gi|325913464|ref|ZP_08175830.1| bifunctional protein FolC [Lactobacillus iners UPII 60-B]
 gi|325477233|gb|EGC80379.1| bifunctional protein FolC [Lactobacillus iners UPII 60-B]
          Length = 420

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I  +  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIINLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ + + P  I A+  +     ++  N   A++ A +     D++VV G
Sbjct: 362 DHLQRKLPVAILAQ--NFNNHVMQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|227875257|ref|ZP_03993399.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
 gi|227844162|gb|EEJ54329.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
          Length = 458

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 13/149 (8%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386
           D     + L        R +F+G    G RIY DY H    +   L   R +  +GR++V
Sbjct: 296 DFGAFCQSLSSFTGTGRRMQFLG-EIGGVRIYDDYGHHPTEVAATLGAARDLAGNGRLLV 354

Query: 387 VFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF 439
            F      R +        +    AD  +V       E+P      + I   +       
Sbjct: 355 CFQPHLYSRTKTFASEFATVLSA-ADEVVVCGVYAARENPTDGADGDAIADLMGE---KG 410

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +   A      +    D+L+  G G
Sbjct: 411 QFISDMYAAGDAVYNLAKPGDLLLFLGAG 439


>gi|315617649|gb|EFU98255.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 3431]
          Length = 457

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 101/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVW 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGDVKWSLVGEHNMHNGLMAIAAARHVGVSPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV 432


>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
 gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
          Length = 492

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 143/411 (34%), Gaps = 50/411 (12%)

Query: 68  AEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  IVVS    L +   +  + S  P +        L   A          I AVTGT+G
Sbjct: 86  ASRIVVSPGVPLSEPILAYAMDSGIPTI------SELGFAAEAFPK--AVKIAAVTGTNG 137

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V +F  QI Q++G+ +F  G   T  S A       PS                   
Sbjct: 138 KSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFMFPS-----------DDPPYQVT 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS+ L+           G   NL  DH++ H++ + Y   K RLFE +   +   I
Sbjct: 187 VLEVSSYQLELP--GSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERMDSSKLSII 244

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +  D + ++V  + ++   +       G  +  +   A+                    
Sbjct: 245 PHG-DEFLRKVAYKYNSGSTKAWLGALPGVQLDNQARRAVVVVPTTKAEARLYLSGLKAV 303

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAH 364
                Q         L + +G+D   +   + +L  +P R + VG + +G     D  A 
Sbjct: 304 GSHNAQNAATASLLSLALDLGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWINDSKAT 363

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-----IAIVTDDN 419
             ++    +K +      R  V+   G  +   +   +G     L+D      AIVT   
Sbjct: 364 NVDAAYTGIKGLAD----RKAVILLGGLAKVLDQDGSLG--FKKLSDLLQNHRAIVT--- 414

Query: 420 PRSEDPEKIRAEIIHGIPGF-IEKG-----NRIEAIRTAIEMLNKQDVLVV 464
                      +I   +    +           +A+  A ++  + D++++
Sbjct: 415 -----FGAFGKQIEKELKEANVSIPCFRSLTMEDAVAIAEKLSKQGDIILL 460


>gi|291563986|emb|CBL42802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SS3/4]
          Length = 448

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 59/403 (14%), Positives = 120/403 (29%), Gaps = 52/403 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL----SLFASRLYGKHPENILAVTG 122
           G E  V+S    L+     +     I +               A+           A+TG
Sbjct: 66  GVELCVISPGIPLEAPFVAVIDEAKIPIWSEIELAYHCSKGKLAAITGTNGKTTTTALTG 125

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                       +I ++   S F +G       +      TT   + +A           
Sbjct: 126 ------------EIMRKFYKSVFVVGNIGDP--YTAHALETTDESVTVA----------- 160

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                E SS  L+   +        + TN+  DH+D H+T + Y   K  +      +++
Sbjct: 161 -----EVSSFQLET--IMDFHPNVSAITNITPDHLDRHKTMECYIQVKEGITRNQTEEDT 213

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             + Y D      + +      C+VL    + K      +       +     E      
Sbjct: 214 CVLNYED----PVLREFGKTLKCKVLYFSSKEKLDEGIFMDGDFIVYRHDGKNEKVLDVN 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              + G     N + A  + I +G+   ++ E   +   V  R E+V             
Sbjct: 270 ELNIIGRHNHENVMTAVAIAIHLGVPMDMIREACREFKAVEHRIEYVRERFGVTYYNDSK 329

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               ++    +K +         ++   G D+       +      +  + ++       
Sbjct: 330 GTNPDAAIQAIKAMPG-----PTLLIAGGYDKHSEYDEWIENFDGKVRYLVLI------G 378

Query: 423 EDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +KI      HGI   +   +  EA++      N  D +++
Sbjct: 379 QTRDKIAECAKKHGITDIMYAEDMQEAVQVCASYANAGDYVLL 421


>gi|269978146|ref|ZP_06185096.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307701109|ref|ZP_07638134.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
 gi|269933655|gb|EEZ90239.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307614104|gb|EFN93348.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
          Length = 490

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 13/149 (8%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386
           D     + L        R +F+G    G RIY DY H    +   L   R +  +GR++V
Sbjct: 328 DFGAFCQSLSSFTGTGRRMQFLG-EIGGVRIYDDYGHHPTEVAATLGAARDLAGNGRLLV 386

Query: 387 VFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF 439
            F      R +        +    AD  +V       E+P      + I   +       
Sbjct: 387 CFQPHLYSRTKTFASEFATVLSA-ADEVVVCGVYAARENPTDGADGDAIADLMGE---KG 442

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +   A      +    D+L+  G G
Sbjct: 443 QFISDMYAAGDAVYNLAKPGDLLLFLGAG 471


>gi|170766667|ref|ZP_02901120.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia albertii TW07627]
 gi|170124105|gb|EDS93036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia albertii TW07627]
          Length = 457

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 101/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVW 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGDVKWSLVGEHNMHNGLMAIAAARHVGVSPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV 432


>gi|167464919|ref|ZP_02330008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384122|ref|ZP_08057840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151202|gb|EFX44511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 130/406 (32%), Gaps = 53/406 (13%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +V +              +  I +V          A R+       I+ +TG++GK++
Sbjct: 74  SLVVKNPGIPYTALPVQWAIDRHIEIVTEV-----EVAYRMSKAP---IIGITGSNGKTT 125

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V ++ + + LS    G                      A + + L +     + VE
Sbjct: 126 TTTLVGKMLEEAELSPVVAGNIGR------------------ALSEAALDANETDRLVVE 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L        +       N+   H+DYH + + Y  +K +LF     +++  I + 
Sbjct: 168 LSSFQLK--GTTDFRPHIACLLNVYETHLDYHGSMEDYVASKAKLFANQTQEDTAVINW- 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D      +     AG    S+  +                  + +           + G
Sbjct: 225 -DDPVCRSLVPTIKAGLMPFSMKEKLLPGVYLDEHQKIVFTDRSGATHTILPAKELGIRG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A+ + +  G++ + +   L+    V  R E+VGT           A    +
Sbjct: 284 SHNIENALAASAIALCAGVNISNIAGVLKLFRGVEHRLEYVGTYHNLEFYNDSKATNPAA 343

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
               ++          +V+   G DR    R ++  +   +   A+VT      E  ++ 
Sbjct: 344 TIKSIEAFEQ-----PLVLIAGGLDRGSDYRELIPVLQERV--KALVTLGQT-GEKIQRA 395

Query: 429 RA----------EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                       +   G+   I      EA+  A  +    D +++
Sbjct: 396 AEQAGLTRRKSVDTAKGVQEAI-----AEAVELAALLAEPGDTVLL 436


>gi|306818519|ref|ZP_07452242.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
 gi|304648692|gb|EFM45994.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
          Length = 490

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 13/149 (8%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV 386
           D     + L        R +F+G    G RIY DY H    +   L   R +  +GR++V
Sbjct: 328 DFGAFCQSLSSFTGTGRRMQFLG-EIGGVRIYDDYGHHPTEVAATLGAARDLAGNGRLLV 386

Query: 387 VFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGF 439
            F      R +        +    AD  +V       E+P      + I   +       
Sbjct: 387 CFQPHLYSRTKTFASEFATVLSA-ADEVVVCGVYAARENPTDGADGDAIADLMGE---KG 442

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               +   A      +    D+L+  G G
Sbjct: 443 QFISDMYAAGDAVYNLAKPGDLLLFLGAG 471


>gi|159039401|ref|YP_001538654.1| FolC bifunctional protein [Salinispora arenicola CNS-205]
 gi|157918236|gb|ABV99663.1| FolC bifunctional protein [Salinispora arenicola CNS-205]
          Length = 444

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 19/136 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V        + +D AH    +   +  ++      +++ V G  GD+D  +   
Sbjct: 302 PGRLERVRAAPT---VLLDGAHNPQGMAATVTALQEEFAFSKLVAVLGVLGDKDVTR--- 355

Query: 402 MGKIALDLADIAIVT-DDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + ++   + D  +VT + +PR   +++   + AE+  G           +AI  A+ +  
Sbjct: 356 LLELLEPVIDQLVVTRNSSPRAMATQELATLAAEVF-GPDRVAVAEQMPDAIEVAVALAE 414

Query: 458 ---KQDV----LVVAG 466
                ++    ++V G
Sbjct: 415 EDVPGELAGVGVLVTG 430


>gi|330994422|ref|ZP_08318347.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
 gi|329758422|gb|EGG74941.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
          Length = 482

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 91/282 (32%), Gaps = 19/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  +    TN+  +H+D+  T++A   A    F   +P    A++  D    ++++ R  
Sbjct: 174 LPSVITVVTNMDPEHLDHWGTEEAMQAAY-DQFVSNIPFYGFAVLCIDHPAVQQMIPRLS 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVC------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          Q      K +                 +   +   F  P+ G   V NA
Sbjct: 233 DHRIITYGFSPQADVRAEKVITDKLGATFEVVITNRNRNRSRRAGPFRLPMLGHHNVQNA 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +   + ID A +         V  RF   G  + G  I  DY H    +  +LK 
Sbjct: 293 LAAIAVGTEMEIDDATIRSAFAAFRGVKRRFTRTG-ETGGITIIDDYGHHPVEIAAVLKA 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSEDP-EKIRAEI 432
            R   +G +I V      R    + +  +    + D    I+ D     E P E I  + 
Sbjct: 352 ARQAGAGNVIAV--MQPHRYSRLKSLFNEFCTCMNDAGTVIIADVYAAGESPIEGIDRDA 409

Query: 433 I------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +       G    +              +    D +V  G G
Sbjct: 410 LVEGLRERGHRSVVPLPGPEHLAEMINAIARPGDFVVCLGAG 451


>gi|325207739|gb|ADZ03191.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis NZ-05/33]
          Length = 424

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 125/397 (31%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVGEVKKRMKLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAINAEPVSDDTIIASFERIEAARSEISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +    G    +    +D+          ++   +  + +     I   +   K ++ 
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPKSLLS 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V    +F  L+ +   +   +   S          P P     Y    A
Sbjct: 203 HAEAIGAKLLMVQRDFEFHALENIQ-WNYHFRPQHSDSPARNRNSLPFPALRGAYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +   +  +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACALTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ 
Sbjct: 319 RRSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDMPRGMTLESLQN 375

Query: 431 EIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++    I          EA R A     + D +VV G
Sbjct: 376 KLHEHSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|312871875|ref|ZP_07731959.1| bifunctional protein FolC [Lactobacillus iners LEAF 3008A-a]
 gi|311092597|gb|EFQ50957.1| bifunctional protein FolC [Lactobacillus iners LEAF 3008A-a]
          Length = 420

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I ++  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 305 IDGAHNPDAAYNLAQTIISLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 361

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ + + P  I A+  +     ++  N   A++ A +     D++VV G
Sbjct: 362 DHLQRKLPVAILAQ--NFNNHVMQAVNVRSALKIARQNAKPDDLIVVTG 408


>gi|306844332|ref|ZP_07476924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
 gi|306275404|gb|EFM57145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
          Length = 467

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 103/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + E L+     AII  DDAY + +  R H AG RV+ +  +                   
Sbjct: 207 IKERLVAASGTAIIGVDDAYCQAIADRLHGAGIRVMRISKEKHLDRGYFADGAKLLWSQD 266

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             ++     + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|261345182|ref|ZP_05972826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rustigianii DSM 4541]
 gi|282566874|gb|EFB72409.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rustigianii DSM 4541]
          Length = 447

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 104/377 (27%), Gaps = 51/377 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ A  +  I +  G    F IG        +     +    I   
Sbjct: 89  PERWVLAVAGTHGKTTTAGMLAWILEDCGYEPGFLIGGVPGNFDVSSKIGNSPFFVIEAD 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +       +    V                         NL  DH D  +  +A      
Sbjct: 149 EYDCAFFDKRSKFV---------------HYSPKTLILNNLEFDHADIFENLEAIQ---- 189

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  PA        S   +K+  N GC                       +  
Sbjct: 190 -KQFHHLVRLVPASGKILMPDSDNNLKQVMNMGCWSEQELVGEHGEWQAVKLNHDGSRFE 248

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               + K  +  +   G   + N L+A      +G+ +      L+K      R E  G 
Sbjct: 249 VHYQQQKVGEVNWSQVGNHNIQNGLMAIAAAHHVGVPAKEACLALDKFINARRRLELRGV 308

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------ 403
                 +Y D+AH   ++   L+ +R+   G  RII V        +     MG      
Sbjct: 309 E-NDVSVYDDFAHHPTAILATLEALRSKVGGTARIIAVLEP-----RSNTMKMGINKNDI 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQ 459
             AL  AD   +         P  I     EI            +        IE     
Sbjct: 363 APALGRADEVFLFQ-------PTNIPWMVTEIAEHCVQPAHWHADVDTLANMVIETAQPG 415

Query: 460 DVLVVAGKG-----HET 471
           D ++V   G     HE 
Sbjct: 416 DHILVMSNGGFGGIHEK 432


>gi|300821335|ref|ZP_07101483.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 119-7]
 gi|300526224|gb|EFK47293.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 119-7]
          Length = 440

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 85  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 143

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 144 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 185

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 186 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 245

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 246 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 304

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 305 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 359

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 360 SLGRADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 415


>gi|269468117|gb|EEZ79827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured SUP05
           cluster bacterium]
          Length = 434

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 130/406 (32%), Gaps = 55/406 (13%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
             QA+    + + +S   +          +  I VV +         SR        ++ 
Sbjct: 54  WKQALLADVDEVFISPGIAQTQSIVIWARDKNIPVVSDI-----ELFSRFVKAP---VIG 105

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GKS+V   +  +   S       G     +                         
Sbjct: 106 ITGSNGKSTVTQLLGDMITNSDKKVAVGGNIGKPAL--------------------DCLD 145

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
             + +  +E SS+ LD    + +KL+ G   N+  DH+D + +   Y ++K+ L+     
Sbjct: 146 DQIDYYVLELSSYQLDY--TNQLKLLTGVVLNITPDHLDRYDSFDDYTDSKLSLYRYCQD 203

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D         A + G  +         +     C +     V +SV    
Sbjct: 204 -----LVVNLDEVIVPKKNNAKHFGIDMPKRADDFGTVTCHGSCYLIKGDDVVMSVS--- 255

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 L GE  V N L A  L   IG+   L+ + ++    +  R E+V          
Sbjct: 256 ---EMQLIGEHNVANMLAALALGDQIGLSVELMAQSIKNFKGLEHRLEWVAKKQGVDYYN 312

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A         ++ ++ +      +V   GG   +    +M K+  +     ++   +
Sbjct: 313 DSKATN---SISTIQALKALIDKHENIVLIAGGIAKEEDYSVMFKLIDENVFGVVLIGQS 369

Query: 420 PRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                     A+    +  P         EA+  A  MLN   +++
Sbjct: 370 ---------AADFGQSLNRPQVSYAQTMSEAVNLASGMLNDGVIVL 406


>gi|281417761|ref|ZP_06248781.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
 gi|281409163|gb|EFB39421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
          Length = 466

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 113/360 (31%), Gaps = 37/360 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I AVTG+ GK++  + +  + +  G   +  G          +    T   +
Sbjct: 111 FFELCPAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPLLSKIEEIKDTDKVV 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L               TN+  +H+D H++ + Y  
Sbjct: 171 ------------------LELSSFQLH---TMTKSPNVAVVTNVSPNHLDVHKSMEEYVF 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F     ++   + + +D   +   +   +          +   +    +    + 
Sbjct: 210 AKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDG 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  T   +  D                 +AA   +   +D  ++ +       V  R E 
Sbjct: 270 ETETEIAKASDIV-----IPGVHNVENFLAATAAVIDCVDRDVIRKVATTFTGVEHRIEL 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +         A +       L + +       +++   G D+      +   IA  
Sbjct: 325 VREINGVKFYNDSIASSPTRTIAGLNSFKD-----KVILIAGGYDKKIPYDALGPVIAEK 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  + ++    P+ E  + +R E      G      +  +  EA++ A    +  DV+++
Sbjct: 380 VKCLVLIGQTAPKIE--KALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVIL 437


>gi|149190575|ref|ZP_01868844.1| UDP-N-acetylmuramate-alanine ligase [Vibrio shilonii AK1]
 gi|148835573|gb|EDL52541.1| UDP-N-acetylmuramate-alanine ligase [Vibrio shilonii AK1]
          Length = 449

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 109/357 (30%), Gaps = 31/357 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HERWVLAVSGTHGKTTTSSMLSWILEDCGYQPGFLVGGVLGNFGQSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +     + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEVIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V+ R   +               LK+          
Sbjct: 205 HHLVRTVPGNGRILAPRKDKALGDVLGRGCWSEVEHTGENADWHANKLKR----DGSHFE 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K  +  + L G+  V NAL+A      +G+   L  E L K      R E  G 
Sbjct: 261 VYLHGSKVGEVKWELVGDHNVDNALMAIAGARHVGVTPDLACEALGKFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD--- 408
                 +Y D+AH   ++E+ L  +R    G+  ++          KR +  +       
Sbjct: 320 EVNQVTVYDDFAHHPTAIELTLGGLRN-KVGKQRILAVLEPRSATMKRGVHKETLAQSLT 378

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
            AD   +   +    + +    EI H         +   E ++  +E     D ++V
Sbjct: 379 QADAVFLFQPD----NIDWSVEEIAHSCSQPATVSDSIDELVQAIVEQAQPGDQILV 431


>gi|329124133|ref|ZP_08252680.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
 gi|327467558|gb|EGF13056.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
          Length = 475

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 119/377 (31%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA    +    A+ +   P++      + L+      +G  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN+  DH+D ++       A    
Sbjct: 173 EADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +                 I   +           I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELIPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPDNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGACRRFDQLGEFI 334

Query: 354 RGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           R     R+  DY H    + + +K  R     + IV+        + +       ++   
Sbjct: 335 RPNGKVRLVDDYGHHPTEVSVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 409 LADIAIVTDDNPRSEDP 425
             D  I+ D     E P
Sbjct: 395 -VDALIMLDVYAAGEAP 410


>gi|331671380|ref|ZP_08372178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA280]
 gi|331071225|gb|EGI42582.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA280]
          Length = 457

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      S  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---SHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|117924035|ref|YP_864652.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
 gi|117607791|gb|ABK43246.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
          Length = 466

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 132/370 (35%), Gaps = 41/370 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L G+HP   +  TGT GK++ +S + ++ + +G     +      + F + +R      +
Sbjct: 101 LEGRHP---IVATGTHGKTTTSSMLARLWEEAGWEPGFL-IGGIPADFGRGSRFPKGPWV 156

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            +       +        +      L  +             NL  DH D +   +A   
Sbjct: 157 VVEGDEYDTAFYDKRPKFLHYRPRTLILN-------------NLEFDHADIYADLEAIR- 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            + RL    +P+    +I  DD    ++ +    A   VL  G  G + +  ++      
Sbjct: 203 VQFRLLLRTVPRSGVVLINGDDEEVTKLAE---YACSPVLYYGIHGDYHYRARLNQKDGS 259

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               I  E + FD  +   G   +YN L AA   +  G+ + +V   LE    V  R + 
Sbjct: 260 HWTLIKEEQELFDVAWGQVGMHNIYNGLAAASAALEHGMPAHVVKAGLEGFSGVARRLQV 319

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGD--RDQGKRPIMGKI 405
                 G  +Y D+AH   +++  L+ +R  +   RI  +     +  R +  +  +  +
Sbjct: 320 RAQL-GGVTLYDDFAHHPTAIKTTLEGLRAKVGQARIWAIIEPRSNTMRRKVHQSRLAGV 378

Query: 406 ALDLADIAIVTDDNPRSED----------PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIE 454
               AD  I      R ED           + +  EI   G+       N    ++   E
Sbjct: 379 LGR-ADRVIFV----RPEDKRLHSDELLNVDVVVGEINRAGLNWARVAENVENIVQMVGE 433

Query: 455 MLNKQDVLVV 464
            L   D L+V
Sbjct: 434 DLRPGDHLLV 443


>gi|307544550|ref|YP_003897029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesyntheta se [Halomonas
           elongata DSM 2581]
 gi|307216574|emb|CBV41844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Halomonas
           elongata DSM 2581]
          Length = 214

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  +   +G+  + +   LE+   +P R E++        I         + 
Sbjct: 35  HHQANALAALAMGHRLGLPLSAMTRVLERFGGLPHRCEWIADLDGVRWINDSKGTNVGAT 94

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +  I     GR+I++ G  G +     P+           AI+        D +K+ 
Sbjct: 95  LAAIAGIGPTLEGRVILLAGGVG-KGADFTPL-AAPLQRYGRAAIL-----FGRDADKLE 147

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +   +P      +   A+  A E+    D +++
Sbjct: 148 SALEDALPR-HRVEDLSAAMERAAEIAVPGDCVLL 181


>gi|134298541|ref|YP_001112037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum reducens MI-1]
 gi|189082878|sp|A4J2A9|MURD_DESRM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134051241|gb|ABO49212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
           reducens MI-1]
          Length = 456

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 94/297 (31%), Gaps = 16/297 (5%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I L       + Q    V  E SS  L+    +          NL  DH+D H + + Y 
Sbjct: 143 IGLPMVSEIENYQVGDIVVAEVSSFQLET--TEYFAPKVAVMLNLTPDHLDRHGSMEEYI 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +F    P +   + Y        + + A +   +V+    Q        +     
Sbjct: 201 KAKSCIFIHQKPSDYVVLNY----DDLALRELAKSCPSQVIFFSRQHIIEKGSFIQNDKI 256

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   E         +PG   + NAL A      +G+    +   L +   V  R E
Sbjct: 257 MVSGKGGPEEVIDVNALRIPGPHNLENALAATAAAYTLGLSPRDIAGTLGRFTGVAHRLE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +    +        ++    L++         I++   G ++         KI  
Sbjct: 317 FVANINGVEYVNDSKGTNPDAAIKALESYDA-----PIILIAGGKNKGISFNDFAKKIKE 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +    ++T      +  E  R +   G        +  +A++ A +     +++++
Sbjct: 372 KV--RVLITLGVHGYQIEEAAREQ---GFTNIYPVEDYAQAVQLARKQAKPGEIVLL 423


>gi|291530205|emb|CBK95790.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           70/3]
          Length = 511

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 116/318 (36%), Gaps = 19/318 (5%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R +++     + G     ++ +TG+ GK+S   +++   +  G     +    + +    
Sbjct: 152 RHYINDAKRIINGLPDLTVVGLTGSYGKTSTKFYLE---KLLGAKYNVLMTPESYN---- 204

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               TT   + +       ++  +    + A + G  +   D +K   G  T++G  H++
Sbjct: 205 ----TTMGVVKV-VRGQLNATHEIFLCEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLE 259

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
             ++       K  L + L  K+    +  D+ Y    + +      +V      G   +
Sbjct: 260 TFKSIDNIIKTKFELADSLPDKDGIIFLNYDNEY----IAKHECNKNKVTYSLGGGTDYY 315

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              +    N  Q T+    ++  F   L G   V N + A  +   +G+  A ++  +++
Sbjct: 316 ADNISVSENGTQFTVHNGNEEKQFATKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKR 375

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQ 396
           L  VP R + +   +    I   +       +  L  +      +I+V       G+++ 
Sbjct: 376 LECVPHRLQIIK-GTNKTIIDDAFNSNPTGAKAALDTLAVFDGFKILVSPGMVELGEKEY 434

Query: 397 GKRPIMGKIALDLADIAI 414
                 G+ A ++ D  I
Sbjct: 435 ELNKRFGEQAAEICDFVI 452


>gi|291618220|ref|YP_003520962.1| FolC [Pantoea ananatis LMG 20103]
 gi|291153250|gb|ADD77834.1| FolC [Pantoea ananatis LMG 20103]
 gi|327394614|dbj|BAK12036.1| FolC bifunctional protein [Pantoea ananatis AJ13355]
          Length = 422

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 11/192 (5%)

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             H +        +  ++     +     PLP       A     L  +    S  ++  
Sbjct: 221 MQHGRDWHYHQQAESWSLRDAQGELHD-LPLPQVPLPNAATALVALRASGLNVSDAIIRA 279

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDR 394
              L ++PGRF+   T S   R+ +D AH  ++   +   +  +   GR+  V G   D+
Sbjct: 280 HLPLAILPGRFQ---TISESPRVILDVAHNPHAATYLASRLAALPQSGRVHAVVGMLHDK 336

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           D      +      LA         P +        +++  +       +  +A   A +
Sbjct: 337 D------IAGTLAALAPQVDCWYCAPLAGPRGASAEQLMAHVTSAQAFADVEQAWHQARQ 390

Query: 455 MLNKQDVLVVAG 466
               QD+++V G
Sbjct: 391 QAEAQDIILVCG 402


>gi|167622396|ref|YP_001672690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella halifaxensis
           HAW-EB4]
 gi|189082499|sp|B0TQN8|MURC_SHEHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167352418|gb|ABZ75031.1| UDP-N-acetylmuramate--alanine ligase [Shewanella halifaxensis
           HAW-EB4]
          Length = 489

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 119/352 (33%), Gaps = 47/352 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    Q   +G + +VVS+A S  +          I VV   R+   L+      +G  
Sbjct: 72  GHD-ASQV--KGMDVVVVSTAISADNPELVAAKELRIPVV---RRAEMLAELMRYRHG-- 123

Query: 114 PENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIY 169
               +AV GT GK++  S +  I  +     +F IG    ++  ++    +R        
Sbjct: 124 ----VAVAGTHGKTTTTSLIASIYGEAERDPTFVIGGLLNSAGTNARLGHSRYLIAEADE 179

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                                S     H    ++ +    TN+  DH+D ++        
Sbjct: 180 ---------------------SDASFLH----LQPMVSVVTNIEADHMDTYEGDLEKLKT 214

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   LP    A++  DD   +E++ R                     K      + 
Sbjct: 215 TFVDFLHNLPFYGVAVVCIDDPIVRELIPRIGRRIVTYGFSDDADVQALDFKQTGYSCEF 274

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
            V       D      LPGE  V NAL A  +     I+ A +++ L +   +  RF+ +
Sbjct: 275 TVK-RAGLADLRLSVNLPGEHNVLNALAAIAVATEDDIEDAAIIKALAEFQGIGRRFQQI 333

Query: 350 G---TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           G   T+    ++  DY H  + +   +K  R     R +V+        + +
Sbjct: 334 GEFATSKGEIKLVDDYGHHPSEVAATIKAARLGWPERRLVMIYQPHRYSRTR 385


>gi|167647631|ref|YP_001685294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           sp. K31]
 gi|189082872|sp|B0T833|MURD_CAUSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167350061|gb|ABZ72796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter sp.
           K31]
          Length = 469

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 93/284 (32%), Gaps = 24/284 (8%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +  +   +         I+A+TGT+GKS+  + +  +C+++G  +   G         +D
Sbjct: 101 ELFARTVNAAPEHKKPKIIAITGTNGKSTTTALIGHLCRQAGRDTRVGGNIGEGVLGLED 160

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                   + L                   SS+ LD      +K  A    N+  DH+D 
Sbjct: 161 MHGGAVYVLEL-------------------SSYQLDL--TSSLKPDAVVLLNISPDHLDR 199

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--KFI 277
           H     Y  A  R       K   AII  DD + +++      A  R +     G     
Sbjct: 200 HGGMDGY-IAAKRRIFLNQGKGDTAIIGVDDPWCQQICTEITAANRRTIWPISAGKAMGR 258

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            +  +  +          E  D      LPG     NA  A     AIGI +   ++ L 
Sbjct: 259 GVYALQGVLYDATGERVTEMADLLRARSLPGRHNWQNAAAAYAAAKAIGIPAHQAVDGLM 318

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               +  R E VG   +   +    A  +++    + +      
Sbjct: 319 SFPGLAHRMETVGKLGKVRFVNDSKATNADAARQAMSSYPKFYW 362


>gi|82779294|ref|YP_405643.1| putative ligase [Shigella dysenteriae Sd197]
 gi|309784150|ref|ZP_07678790.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81243442|gb|ABB64152.1| putative ligase [Shigella dysenteriae Sd197]
 gi|308928013|gb|EFP73480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 457

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 103/363 (28%), Gaps = 44/363 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEII----HGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
               AD   +         P  I  ++       +      G+        ++     D 
Sbjct: 377 SLGRADEVFLLQ-------PAHILWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDH 429

Query: 462 LVV 464
           ++V
Sbjct: 430 ILV 432


>gi|254495866|ref|ZP_05108776.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
 gi|254354902|gb|EET13527.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
          Length = 458

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 75/423 (17%), Positives = 136/423 (32%), Gaps = 57/423 (13%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGKHPENILAVTG 122
           QGA+ +V SSA  + +           P++     R   L+      +G      +AV G
Sbjct: 62  QGADVVVRSSAVGMNNPEVVAAREQLIPVI----PRAAMLAELMRFRHG------IAVAG 111

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S V  +    G   SF IG     +        +    +   ++ +      
Sbjct: 112 THGKTTTTSLVSSLLAEGGLDPSFVIGGKLNSAGVNAKLGQSPYFVVEADESDASFLF-- 169

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               +K +    TN+  DH+  ++            F   LP  
Sbjct: 170 --------------------LKPMMAIVTNIDADHMSTYEDNFDKLRTTFLEFLHHLPFY 209

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD   + +++                          + ++  V         +
Sbjct: 210 GLAVVCTDDPEVRNILQSIERPTLTYGFNDEAHYRAVDWTQNELLSEFTVARPAPYPPLN 269

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI--- 358
             F  PG   V NAL A  +   +G+  A ++  L K   V  RF+ +G           
Sbjct: 270 ICFQYPGRHNVLNALAAIAIATELGVSDAAIVSALAKFQGVGRRFQMLGEKHFERGSALV 329

Query: 359 YVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVT 416
             DY H    +   +   R +    R++ VF      R Q        +   L+D   + 
Sbjct: 330 VDDYGHHPQEIFSTIDAFRRVWPNKRLVHVFQPHRYSRTQSLHDQFVDVLS-LSDKLFLF 388

Query: 417 DDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNK----QDVLVVAG 466
           D     E        +  A+ I G    +   N       +++M L++     DV+++ G
Sbjct: 389 DIYSAGEAAIPGISSEGLAQKIRGNDKNVTMVN-----EQSLKMQLDEFILDGDVILIQG 443

Query: 467 KGH 469
            G+
Sbjct: 444 AGN 446


>gi|78184101|ref|YP_376536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9902]
 gi|118595699|sp|Q3AZI5|MURD_SYNS9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78168395|gb|ABB25492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9902]
          Length = 462

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 113/352 (32%), Gaps = 30/352 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                     +    + +TGT+GK++V   +  +   +G+ +   G              
Sbjct: 98  GEIELAWEALNDIPWVGITGTNGKTTVTHLLSHVLGHAGIVAPMGGNMGV---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   +A  +    +     + +E SS+ ++      +    G +T L  DH++ H T
Sbjct: 148 ---SAADMALKIRRGETPKPDWLVMELSSYQIEAG--PNLAPSIGIWTTLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +AY  A      +           AD +  +  +KR                   +   
Sbjct: 203 LEAYR-AIKHSLLQRSSLAIFNGDDADLSAHRPSLKRGMWVKAAPPCHDDPPADFWIDDA 261

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             +  ++   +         +  +PG     N L+       IG+++  + + LE    V
Sbjct: 262 GTVQAREGGAMFP-----AKVLAMPGAHNRQNLLLVTAAAAQIGLNAEQIAQGLESFPGV 316

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G+ S         A   ++  + L+ +        +VV   G  +       +
Sbjct: 317 PHRLENLGSTSSADVFNDSKATNYDAAAVGLQAMAG-----PVVVLAGGQTKRGNATGWL 371

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            ++      + +       +E+ + +  +  +         +   A+  A+ 
Sbjct: 372 AELKSKACAVVLF---GAGAEELDALIRQ-SNYQGQVHRCTDLSAAVAIAVR 419


>gi|117928219|ref|YP_872770.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus
           11B]
 gi|189028966|sp|A0LTM4|MURC_ACIC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117648682|gb|ABK52784.1| UDP-N-acetylmuramate--L-alanine ligase [Acidothermus cellulolyticus
           11B]
          Length = 477

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 134/410 (32%), Gaps = 45/410 (10%)

Query: 71  IVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A      + +       P+L     R      AS + G+     +AV GT GK++
Sbjct: 81  VVASTAVPPTTPELAVARERGLPVL----PRAA--ALASVMAGR---RGVAVAGTHGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S V +  QR G         + +     +    T S        S  S          
Sbjct: 132 TTSMVVRALQRCGAD-PSFAIGADLGEPGSNAHDGTGSIFVAEADESDESFLL------- 183

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        +   A   TN+  DH++++    A  +A    F   +P     +   
Sbjct: 184 -------------LPFHAAVVTNVEADHLNHYADLAAI-HAAFDRFVAKVPDGGFLVACT 229

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDF-LFPL 306
           DD  ++E+  RA   G  V   G   +  + L  +       +  ++++G         +
Sbjct: 230 DDPGAEEIASRAARRGTVVRRYGTSPRADVRLVDLRLEVAGSRFAVAMDGTVLGELQLRV 289

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NA  A  + + +G   + V E L        RF+  G    G R++ DYAH  
Sbjct: 290 PGAHNALNATAAVAVTVGLGFPFSEVAEGLADFTGARRRFQPQG-EVAGIRVFDDYAHHP 348

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   L+  R +  G  +VV        R    R   G  AL LAD  +V +     E 
Sbjct: 349 TEIAATLRAARVVADGGRLVVAFQPHHYYRTADFRTEFG-AALALADEVVVMEVYAPGET 407

Query: 425 PEKIRAEIIHGI------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P                    + + +               D++V  G G
Sbjct: 408 PLPGGTGAALAAAVPLPGSAVVFEPSWSAVPEHLAARARPGDLIVTMGAG 457


>gi|308174670|ref|YP_003921375.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607534|emb|CBI43905.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554600|gb|AEB25092.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens
           TA208]
 gi|328913005|gb|AEB64601.1| UDP-N-acetyl muramate-alanine ligase [Bacillus amyloliquefaciens
           LL3]
          Length = 432

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 115/395 (29%), Gaps = 54/395 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S  + +  +    P++      KFL+ +  +         +AVTG  GK+S    +  
Sbjct: 71  PDSHPEIAKALAEGIPVIR---YHKFLAEYMKKYTS------VAVTGAHGKTSTTGLLAH 121

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + Q++  +SF IG  +   + + +            +   +  S    +  +        
Sbjct: 122 VMQQAKPTSFLIGDGTGKGNESSEY-----FVFEACEYRRHFLSYQPDYAIM-------- 168

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         TN+  DH DY       F+A        L      I   DD Y   
Sbjct: 169 --------------TNIDFDHPDYFANIDDVFDAFQ---NMALQVNKGIIACGDDEY--- 208

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K   N        G +  F     V                   F  P  G   V N+
Sbjct: 209 LPKIHANVPVVYYGTGEENDFQARNIVKNTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNS 268

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    LC    ID  ++   LE    V  RF           +  DYAH    +++ ++ 
Sbjct: 269 LAVIALCHYEEIDVNMIKLGLESFGGVKRRFNEK--VIGSQVLIDDYAHHPTEIKVTIEA 326

Query: 376 IRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAE 431
            R     R I+         R Q       +     AD   + D      E+  K+   +
Sbjct: 327 ARQKYPEREIIAVFQPHTFTRTQSFLDEFAESLSA-ADRVYLCDIFGSARENVGKLTITD 385

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEML-----NKQDV 461
           +   I           ++  A E          D+
Sbjct: 386 LQEKIDNAELIEENDTSVLKAHENAVLIFMGAGDI 420


>gi|269125780|ref|YP_003299150.1| FolC bifunctional protein [Thermomonospora curvata DSM 43183]
 gi|268310738|gb|ACY97112.1| FolC bifunctional protein [Thermomonospora curvata DSM 43183]
          Length = 471

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E   T   G  + +D AH    +   +  I       R+I V    GD+D      
Sbjct: 327 PGRLEIART---GPTVLIDSAHNPAGMSATVNAITEDFGFTRLIGVVAAAGDKDV---AG 380

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKI--RAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           M +    +    IVT + + RS  P ++   AE I G           +AI  A+ +  +
Sbjct: 381 MLEQLEPVLTELIVTRNTSHRSMPPRQLGELAEGIFGAERVHVIDRLDDAIDRAVALAEE 440

Query: 459 -----QDVLVVAG 466
                   +++ G
Sbjct: 441 TGEYQGAGVLITG 453


>gi|238763892|ref|ZP_04624849.1| Folylpolyglutamate synthase [Yersinia kristensenii ATCC 33638]
 gi|238697860|gb|EEP90620.1| Folylpolyglutamate synthase [Yersinia kristensenii ATCC 33638]
          Length = 416

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 17/198 (8%)

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALV 332
           G  ++ + +    ++Q+ +   +     +         + NA  A  +    G+     V
Sbjct: 217 GAHLYQRDIAWQFSQQEKSWDWQCDARQWNNLPLPNVPLANAATALAVLHYSGLSLSEEV 276

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
           +    +   +PGRF+ V   S    + +D AH  ++   +   +  +   G++  V G  
Sbjct: 277 IRQGLQTATLPGRFQRV---SEKPLLILDVAHNPHAARYLADKLAKLPKQGKVRAVVGML 333

Query: 392 GDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D G     G +A   +  D       + PR         ++   +    +  +   A
Sbjct: 334 SDKDIG-----GTLACLSEQVDEWYCAPLEGPRG----ASAEQLAEHLVQSRQFSHVETA 384

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++    QDV++V G
Sbjct: 385 WRQAMQDAEPQDVVIVCG 402


>gi|332283263|ref|YP_004415174.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
 gi|330427216|gb|AEC18550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
          Length = 509

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 129/387 (33%), Gaps = 52/387 (13%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+  A      +   +LA+TGT+GK++V +  +Q+ Q SG ++   G           
Sbjct: 118 RALADMA---DQGYQPKVLAITGTNGKTTVTAMTRQLVQASGHTAKVAGNI--------- 165

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
               +P+ +  A + +  +        +E SS  L+  R   +   A    N+ +DH+D+
Sbjct: 166 ----SPAALT-ALSDALAADDLPEVWVLELSSFQLESVRT--LSPDAAVVLNVTQDHLDW 218

Query: 220 HQTQQAYFNAKMRLFEELL-----PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           H + QAY  AK RL            +   +  ADD  +  V     +       +G + 
Sbjct: 219 HGSMQAYAAAKARLLGMSRVAIVNRDDPLVMAMADDVKALAVRSFGRDMPVYEGDLGLER 278

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID------ 328
               L    A  N   +  +   +    + P   E +    + A  L +    +      
Sbjct: 279 SNDMLWLAAAEANDFDLPAAPARRKKAAVAPQRPEGRPARLIPADALRVRGQHNALNALA 338

Query: 329 -----------SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                       A +L  L        R EFV   +    I         +    L    
Sbjct: 339 ALGLARSLGLGWAAMLHALRDYAGEAHRTEFVRAVAGVDFINDSKGTNVGATVAALD--- 395

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
               G  +V+   G  + Q   P+   +      + ++       +D   I   +     
Sbjct: 396 --GMGAPVVLIAGGLAKGQDFSPLAAAVRAHARAVVLI------GQDAGLIGQALAETGV 447

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +  +A+  +IE+    D +++
Sbjct: 448 PVEHAVDLGQAVARSIELAQPGDTVLL 474


>gi|225019925|ref|ZP_03709117.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
 gi|224947289|gb|EEG28498.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
          Length = 463

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 103/367 (28%), Gaps = 56/367 (15%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I AVTG+ GK++  + + ++ +    +    G          +         
Sbjct: 111 FFELCPCKIYAVTGSDGKTTTTTLISEMLKAQDYNVHLGGNIGKALLPGIE--------- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             VE SS  L   R           TN+  +H+D H T + Y  
Sbjct: 162 ---------EIGPDDVAVVELSSFQLLSMRQS---PDVAVITNIAPNHLDVHGTMEEYIQ 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                        S A++ AD+  +  +        C+              +   I   
Sbjct: 210 C-KCHLLWHQNAFSKAVLNADNEITDGLSGYVRGRLCKFSRRAAPHTGAWADENGDIFLM 268

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
                ++         P     + Y  L A    ++  ++ A +L+   +   V  R EF
Sbjct: 269 DNGKQTLLFNQNQIRLPGTHNVENY--LAAIA-AVSGVVEPANILKVAREFGGVQHRIEF 325

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI------- 401
           V             A +       L           +++   G D+     P+       
Sbjct: 326 VRELDGVKWYNDSIATSPTRTIAGLNAFEQ-----KLIIIAGGYDKKLSYEPLAPVLVSK 380

Query: 402 ------MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                 MG  A  +    +    +    DPE +               +  EA+  A ++
Sbjct: 381 SKALILMGTTAPKIQQAVV----DCSGYDPELL---------PIYHVASMEEAVTLARKI 427

Query: 456 LNKQDVL 462
            +  D++
Sbjct: 428 ASAGDII 434


>gi|157827094|ref|YP_001496158.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
 gi|166224722|sp|A8GW94|MURC_RICB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157802398|gb|ABV79121.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
          Length = 478

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 135/429 (31%), Gaps = 68/429 (15%)

Query: 69  EAIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
             +VVSSA +  +      +    PI+        L            +  +AV+G+ GK
Sbjct: 74  SYVVVSSAINRNNPEVKEALERKIPIIRRAEMLAELMRL---------KCSVAVSGSHGK 124

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  + + +GL    I     I++ + +  L + + +      S  +        
Sbjct: 125 TTTTSLVACLFEAAGLHPTVI-NGGIINNRSTNAYLGSSNYLIAEADESDATFI------ 177

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          I       TN+  +H+DY++      NA  R F   LP    A+ 
Sbjct: 178 --------------SIPSTIAIITNIDPEHLDYYKDFDTLINA-FRSFITNLPFYGFAVC 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF------ 300
             D    +E++            +      I    +          + +   +       
Sbjct: 223 CIDHKIVRELVNNITERKVITYGIDSDDAHITAFNISTDITSSTFDVKISLPNVSGVTII 282

Query: 301 -DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P PG   + N+L A  + + +      +         V  RF  V        + 
Sbjct: 283 EKITIPTPGRHNILNSLAAISVGVELDFGIKAIKNGFNSFKGVKRRFTKVA-EYNQASVI 341

Query: 360 VDYAHTSNSLEMILKNIRTI---TSGRIIVVF------GCGGDRDQGKRPIMGKIALDLA 410
            DYAH    ++  L   + I     G++I +F            D   R        D A
Sbjct: 342 DDYAHHPEEIKATLSTAKNIANKQHGKVIAIFQPHRYSRMQHLFDDFMR------CFDDA 395

Query: 411 DIAIVTDDNPRSED----------PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           D+  +TD     E            + I     H    F+ K +  +++   +   +  D
Sbjct: 396 DLLYITDVYAAGESHIEGISGQSLIDNIIKLKYHNQANFLAKLD--DSLEVIMNKASPGD 453

Query: 461 VLVVAGKGH 469
           ++++ G G+
Sbjct: 454 MIIMMGAGN 462


>gi|308173485|ref|YP_003920190.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606349|emb|CBI42720.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 121/366 (33%), Gaps = 52/366 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + + ++ +   + +   G   T++S    +   
Sbjct: 105 ELAYYITN---AKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGTVASEVAYHADG 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                +  E SS  L        +   G   N+   H+DYH ++
Sbjct: 162 ------------------DEWIVTELSSFQL--MGTHAFRPEIGLILNVFDAHLDYHHSR 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK +++   L  +  AI+  +D     + K                    +K   
Sbjct: 202 ENYEKAKQKVYLHQLESD-TAIVNQNDETVVRLAKGGKAGTVPFSVSQELSSGAFIKDGM 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +   + +    +         LPG   + N L A       G  +  + + L     V 
Sbjct: 261 LMFGDEAILPVDDIV-------LPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RP 400
            R ++V             A    +    L   +       +++   G DR  G    +P
Sbjct: 314 HRLQYVTAIQNRKFYNDSKATNILATSKALSAFKA-----PVILLAGGLDRGNGFDELKP 368

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M  +       A++T     P+ E   K+  E+  GI       N  +A+  A  + N+
Sbjct: 369 YMDNV------KAVLTFGQTAPKIE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNE 417

Query: 459 QDVLVV 464
            DV+++
Sbjct: 418 GDVILL 423


>gi|228923210|ref|ZP_04086500.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836416|gb|EEM81767.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 433

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 112/387 (28%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIETFNERISVNGTPIADEEIIELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + +V++         
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  +G     +H +                 +D         +       + A + +   
Sbjct: 221 LYELGKHFTALHKQSNEDGEQFDFTCPFSTFEDLQISMKGIHQVGNAALALMAVMYVKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +L    GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 VSFLIEEEEIRTGLQLAYWIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIAENDVFIITG 417


>gi|313899199|ref|ZP_07832719.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
 gi|312956022|gb|EFR37670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
          Length = 437

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 135/392 (34%), Gaps = 47/392 (11%)

Query: 75  SAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             Y+    +  I+   P +   V++  K L+               AVTGT+GK+++ + 
Sbjct: 61  ENYAFVVKNPGIKYTVPFVRYFVEHKVKILTEVEIGYRYATKFKYGAVTGTNGKTTITTM 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + ++ +     +   G      S                   +         V++E S+ 
Sbjct: 121 LYEMLK-YNHKAIVAGNIGWPLSEL-----------------ALAYEDEEKDVALELSNF 162

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L    ++          NL  DH+DY  + ++Y+ +KMR++E             DD +
Sbjct: 163 QLL--GIEHFAPHVSVVCNLAPDHLDYMPSVESYYESKMRIYENCT---------EDDWF 211

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V         + +        +  + V        V +       +  F + G++ +
Sbjct: 212 LRNVDDATVMQYAQHIPCKVIDFSLTRQDVDLYRKDGTVYLHELALFEEKNFHVVGDYNL 271

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA++A+ +   +G+  + + + +     V  R E++G  +         A  ++++   
Sbjct: 272 SNAMIASCMAYKLGVSVSDIQKAIAAFSPVEHRLEYIGEKNGVKFYNDSKATNTHAVAAA 331

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L +       + I++   G D+       + +    +       +  P+ +D        
Sbjct: 332 LNSFD-----KNIILLAGGHDKGISF-EDLKQYDERVKLCVAFGETGPQFQDI------- 378

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                         EA+  A+    +QD++++
Sbjct: 379 ---FSCVQVVETMQEALDAAVANSKEQDIVLL 407


>gi|317048967|ref|YP_004116615.1| FolC bifunctional protein [Pantoea sp. At-9b]
 gi|316950584|gb|ADU70059.1| FolC bifunctional protein [Pantoea sp. At-9b]
          Length = 422

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 115/381 (30%), Gaps = 31/381 (8%)

Query: 103 SLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
              A+RL    P   +  V GT+GK +    ++ +   +G           +    +   
Sbjct: 36  QRVAARLDLLKPAPFVFTVAGTNGKGTTCRTLETLLMAAGYRVGVYSSPHLVRYTERVRV 95

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   L +AL   S   +     + S    +   L  + L   +  ++    +    
Sbjct: 96  QGA----ELDEALHSASFADIEAGRGDISLTYFEFGTLSALNLFRAANLDVVILEVGLGG 151

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              A       +                D  S    K     G +   VG       + +
Sbjct: 152 RLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGVFRGGKPAVVGEPAMPHTIAE 211

Query: 282 VCAIHNKQQVTISVEGKDFDF--------------LFPLPGEFQVYNALVAAGLCIAIGI 327
           V A    Q   ++ + +                    PLP       A     L  +   
Sbjct: 212 VAAEKGAQLSQLNRDWQWQQQGDSWTLQDAQGELRDLPLPQVPLPNAATALIALRASGLT 271

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIV 386
            S  ++     L ++PGRF+ V T  R   + +D AH  ++   +   +  +   G++  
Sbjct: 272 VSEAIIRQHLPLAILPGRFQTVSTAPR---VILDVAHNPHAAYYLASRLAELPRAGKVHA 328

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V G   D+D               D       D PR    E++ A +  G   F    + 
Sbjct: 329 VVGMLHDKDIAGT---LAALAPQVDSWYCAPLDGPRGATAEQLIAHLASG-EAFTTVDS- 383

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A + A +    +DV++V G
Sbjct: 384 --AWQAARQQAKPEDVILVCG 402


>gi|89897956|ref|YP_515066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           felis Fe/C-56]
 gi|122063241|sp|Q255W7|MURD_CHLFF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89331328|dbj|BAE80921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           felis Fe/C-56]
          Length = 419

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 62/381 (16%), Positives = 119/381 (31%), Gaps = 71/381 (18%)

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
              R + PI  V +        A +    +    L +TG++GK++   F+  +    G+S
Sbjct: 78  EAKRRDIPI--VTDV-----QLAFQSPEFYQYPSLGITGSTGKTTTVLFLVHLLHSLGIS 130

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
           +F +G                             +        VE SS  L +       
Sbjct: 131 AFAMGNIGFPI---------------------LQAMYQKGVRVVEISSFQLTEQEQKIPV 169

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           L   +  N+  +H+DYHQT  AY  AKM + + L   +S        +    +       
Sbjct: 170 LSGAAILNISENHLDYHQTLHAYSEAKMNIAKCLQWPDSLWSGEGVSSGRSYL------- 222

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                                     +   SV  K          +   Y A  A     
Sbjct: 223 -----------------------EYTEEIDSVLDKGGALKPLYLHDRNNYCAAYALAK-E 258

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     L+ ++     P R E++G       I    A T +S+E  L  ++      
Sbjct: 259 VTSVPLEAFLQAVQTFEKPPHRIEYLGEKDGVRYINDSKATTMSSVEKALMAVKE----- 313

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            ++V   G +++     ++  +        +        E  ++I   +   +P   +  
Sbjct: 314 NVIVIMGGRNKESNFTSLIP-VLTQTVKHIV-----AMGECRKEIAQALSSSLP-LTQAR 366

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +  EA+  A  +    DV+++
Sbjct: 367 DLQEAVSIAQSIAQPGDVILL 387


>gi|332976917|gb|EGK13739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 460

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 107/350 (30%), Gaps = 28/350 (8%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I + A  I      + + +S  I  +  ++ V + ++ L         +     + VTG+
Sbjct: 63  IKRSAGVI------APKGWSRRIPPSHAVIEVSDPKQALWKLVHWQRAQSRAIFIGVTGS 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++       I          +   +  S    +  L  P                V 
Sbjct: 117 AGKTTTKEMAASILSTKYKVLKSVANNNLYSLMPGNLILLHP-------------KHQVV 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + +  +  G  + +    K   G  TN+G  H+       A      +   + L  +  
Sbjct: 164 VLEMGMAGFGNIRKQCLVAKPSLGIVTNVGEAHVGKLGHSLANVARAKQELIDGLAPKGT 223

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I+ ADD  SK +  R              G               +  +S       + 
Sbjct: 224 LILNADDPGSKRLNTRRFRGQVI-----TLGIEKPATIRATRVKYTKNGMSFYIGKVPYH 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+ G   +YNAL A  +   + + +  + + L+       R + +        I   Y 
Sbjct: 279 IPVWGRHNIYNALAAIAVAKQLNVPTPWIQKGLQNFPAPRMRLQRIKGIKNWLLINDCYN 338

Query: 364 HTSNSLEMILKNIRTITSGRI-IVVFGCG---GDRDQGKRPIMGKIALDL 409
              +++   LK +  +   +  + V G     G         +GK    L
Sbjct: 339 ANPSAMVAGLKVLMRVAGKKQSVAVLGDMHSLGKLSLQSHRQVGKFVARL 388


>gi|257092210|ref|YP_003165851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044734|gb|ACV33922.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 455

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 121/408 (29%), Gaps = 46/408 (11%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F  +A A G + I +S    +Q+          + +V     F               ++
Sbjct: 60  FTAEAFA-GVDLIAISPGVPVQEALVQAAVARGVPLVSEIELFAWGIGGLT---PRARVI 115

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           A+TG++GK++  + V  +C+ +G  +   G     +  A  + +   S   L        
Sbjct: 116 AITGSNGKTTTTALVGALCRAAGRRTAVAGNIGPAALDALMSAIDGRSLPEL-------- 167

Query: 179 SQGVTHVSVEASSHGLDQ-HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                   +E SS  L+  H L        +      D         A      +    +
Sbjct: 168 ------WVLELSSFQLETTHSLAADAAALLNLCEDHLDRYLDMDDYTASKARIFQGNGVM 221

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +     A   A     + ++    N   R    G    +I       +   +   +    
Sbjct: 222 VLNRDDARSLAAGRPGRRMVTFGLNPPPRPCDYGVVDGWIVRGDDRLVACSELQLV---- 277

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                     G     NA+ A  LC A GID A VL  L     +  R E+V        
Sbjct: 278 ----------GSHNAANAMAALALCEAAGIDLASVLPALVAFKGLAHRVEWVAEIDGVAY 327

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                     +    L+ +     GR + +   G  + Q   P+   +       A++  
Sbjct: 328 FDDSKGTNVGATLAALQGL-----GRPVAIILGGDGKGQDFAPLRPALDAHARAAALIGR 382

Query: 418 DNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D           A I+ G         +  EA+R         D +++
Sbjct: 383 D-------ALAMAAILEGCQVPLQHCVDMAEAVRWCAAQARAGDAVLL 423


>gi|121595960|ref|YP_987856.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|222112148|ref|YP_002554412.1| UDP-N-acetylmuramate--l-alanine ligase [Acidovorax ebreus TPSY]
 gi|166222950|sp|A1WC05|MURC_ACISJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765998|sp|B9MFR1|MURC_DIAST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120608040|gb|ABM43780.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|221731592|gb|ACM34412.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax ebreus TPSY]
          Length = 477

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 124/416 (29%), Gaps = 50/416 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S+A    +          I VV      L+       G      +A+ G  GK++  
Sbjct: 68  VVTSTAVQADNPEVLAARERKIPVVPRAL-MLTELMRLRKG------IAIAGAHGKTTTT 120

Query: 131 SFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           S V  +   +G   +F IG    ++S   + +L     I +    S              
Sbjct: 121 SLVASVLGEAGLDPTFVIG--GRLNSAGTNAKLGQGEYIVVEADESD------------- 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                       +  +    TN+  DH++ +             F   +P    AI+  D
Sbjct: 166 -------GSFLNLLPVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILCID 218

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK----DFDFLFP 305
           +   ++++                   +    V A+  +   T+         D   +  
Sbjct: 219 NPAVRDILPLVTCPVTSYGLSEDAE--VRAVDVRAVGTQMHFTVQRRNGVTLPDLQVVLN 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG----TNSRGGRIYVD 361
           L GE  V NAL    +   + +    +L  L     V  RF+  G           +  D
Sbjct: 277 LAGEHNVLNALAVIAVAAELNVPDDALLRALAGFTGVGRRFQRHGDLPAQGGGHFTLIED 336

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDN 419
           Y H    +   L   R    GR +V+        + +       K+    AD  ++T+  
Sbjct: 337 YGHHPVEMAATLAAARGAYPGRRLVLAFQPHRYSRTRDCFEDFVKVLGT-ADAVLLTEVY 395

Query: 420 PRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              E P        +   +   G    +   N  +  +         DV++  G G
Sbjct: 396 AAGEAPIVAADGRSLARALRVAGTVEPVFIDNVADMPQRIAAGARDGDVVLCMGAG 451


>gi|297583565|ref|YP_003699345.1| UDP-N-acetylmuramate/alanine ligase [Bacillus selenitireducens
           MLS10]
 gi|297142022|gb|ADH98779.1| UDP-N-acetylmuramate/alanine ligase [Bacillus selenitireducens
           MLS10]
          Length = 438

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 124/396 (31%), Gaps = 58/396 (14%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+ S AY+  +        T  + V +  KFL  F            +AVTG+ GK+S  
Sbjct: 64  IIASPAYNETNPEVKEAL-TRGIKVHSYPKFLGEFIKGFTS------IAVTGSHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + + +  +S+ IG  +       +            +   +  +    +  +   
Sbjct: 117 GLLAHVLENAKPTSYLIGDGTGKGMENSEY-----FVFEACEYRRHFLNYYPNYAIM--- 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY +  +  F A       +  + + AII   D
Sbjct: 169 -------------------TNIDFDHPDYFKDAEDVFQAFQE----MANQVNKAIIACGD 205

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGE 309
             S   ++R   +   V     +      + V          + + G  +  F  P  G 
Sbjct: 206 DES---LQRLTASVPIVYYGFSEDHDFSAQNVDYDPEGTHFDVMIRGAFYGRFTIPGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL    +C    +    +  H+     V  RF    T   G  +  DYAH    +
Sbjct: 263 HHILNALAVIAICHYEEVTLETIQTHIATFGGVKRRF--SETEMNGQILIDDYAHHPTEI 320

Query: 370 EMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
              +++ R     R +V         R +       + +L+ AD   + D          
Sbjct: 321 AATIESARKKYPDRQVVAVFQPHTFSRTEAFLDDFAR-SLENADHVYLCD---------- 369

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           I +         +   +  E I  A  +     +++
Sbjct: 370 IFSSARE-FKSDLTINHLQERIDGAKLITEDGTLVL 404


>gi|241668949|ref|ZP_04756527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 414

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 123/392 (31%), Gaps = 65/392 (16%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS    L      + S     +V +   F               ++AVTG++GKS++ + 
Sbjct: 60  VSPGIPLNKSPYRVLSKFKQKIVSDIDLFYQSI-----RNTKAKMIAVTGSNGKSTIVTM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + +  G  S  +G   T        +                      +  VE SS 
Sbjct: 115 LDFVLRNLGYKSILVGNIGTPPLNKIGEK--------------------FDYCVVEVSSF 154

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +D    + ++   G   N+  DH+D ++  + Y  +K+ L +              D +
Sbjct: 155 QIDL--FNSVEFDLGCVVNVSPDHLDRYKNYEEYKQSKLNLAKFSKDFFVY------DVH 206

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           +  +         R        K + + +                        L GE  +
Sbjct: 207 NTGIKYAGEYQIVRGSIYKDTTKLLDITE----------------------TNLFGEHNL 244

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N +V   +    GID +  +  ++K   +  R E V   +    I         +    
Sbjct: 245 ENIIVVLNIFDRFGIDISKAVAAIKKFKGLKHRCEIVKNIAGVTYINDSKGTNVGATIA- 303

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              + +ITS + I++   G  +      +M K          +       +D E I   I
Sbjct: 304 --ALNSITSSKNIILLLGGVAKGGDF-SLMSKSLAKYVKYVYL-----YGQDKEYIENYI 355

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  +    +  +A R A +     +++++
Sbjct: 356 -KDLCQYQICNDMKDAFRLASQKAQDSEIVLL 386


>gi|39998162|ref|NP_954113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
 gi|62900554|sp|Q748D4|MURD_GEOSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39985108|gb|AAR36463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
          Length = 452

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 138/413 (33%), Gaps = 56/413 (13%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLY 110
           + D   F        AE +VVS     +     A  R+   ++            ASR  
Sbjct: 60  RHDEADFAA------AETVVVSPGVPQESPYLQAARRAGREVI-------TEIELASRFI 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++A+TGT+GK++  +   ++    G  +F  G          +    T + +  
Sbjct: 107 TAP---LVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGNPLIELVE----TGAAVD- 158

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                         V VE SS  L+  R    +       N+  DH+D + T Q Y +AK
Sbjct: 159 -------------RVVVEISSFQLEWIR--SFRPTVAVLLNITEDHLDRYATYQEYIDAK 203

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            R+F+     +  A++  DD     +  R   A   +      G+ I  +    I     
Sbjct: 204 ARIFKNQTASDW-AVLNVDDPIVAGLAGRTCAAVFPMSRQRELGEGIFYRDGAIIFRHAG 262

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                    F     + G   + N + +    + +G D+   L  +E    +P R E V 
Sbjct: 263 RQERFPTDRF----RITGVHNIENIMASLAAALLLGCDADRALACVEAFGGLPHRMELVR 318

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
             +         A    S+E  L +         I +   G D+     P+ G +A  + 
Sbjct: 319 ELNGVRYFEDSKATNVGSVEKALASFND------ITLIAGGKDKGGSYAPLAGLVAERVR 372

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            + ++       E  +++  E +  +          +A+  A  +     V++
Sbjct: 373 HMILI------GEAKDRMARE-LGHLTDTRMAVTLEDAVELAASLTQPGGVVL 418


>gi|33519617|ref|NP_878449.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
 gi|44888181|sp|Q7VQI7|MURC_BLOFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33517280|emb|CAD83664.1| UDP-N-acetylmuramate:alanine ligase [Candidatus Blochmannia
           floridanus]
          Length = 480

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 148/443 (33%), Gaps = 61/443 (13%)

Query: 45  IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFL 102
           IF    G++ D +  I Q I      +V+SSA  + +           P++      K L
Sbjct: 67  IFF---GHR-DSN--INQEIN----IVVISSAIDINNPEVQQAKRLKIPVIH---RVKIL 113

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S      YG      +A+ GT GK++  S +  I   +GL    +     I S     RL
Sbjct: 114 SELMRYKYG------IAIAGTHGKTTTVSMLTNIYVEAGLDPTFV-NGGIIRSQGVSARL 166

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                                     A S   D+  L  +  +    TN+  DH++ +  
Sbjct: 167 GYG-------------------NDFIAESDESDKSFLR-LCPVVAVITNIDTDHMNTYHQ 206

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y       F + LP    A++  DD   ++++ R +                 +K  
Sbjct: 207 NFEYLQEVFIKFLDKLPMYGYAVVCIDDPVVRKILPRINR-KIITYGFSKDATLCIVKYY 265

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                     +    K+   +   PG     NA  +  + I  GI   ++L+ +      
Sbjct: 266 QYREKSNFTILIKNNKELQVVLNTPGYHNALNAAASIAVAIEEGIRDTVILKSMSNFTGT 325

Query: 343 PGRFEFVGTNSRGG--------RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG- 392
             RFEF+G               +  DY H    L   +  IRT  +  R+++VF     
Sbjct: 326 NRRFEFLGNYPLNIINGRVGKVMVIDDYGHHPAELRSTIIAIRTGWSDHRLVMVFQPHRF 385

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIP-GFIEKGNR 445
            R         ++     D+ ++ D     E P      + +   I+       I   N 
Sbjct: 386 TRTHELYDNFVRVLST-VDVLLMLDIYSAGEQPIMGINAQSLCDSILKYAKVQPIFVQNE 444

Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468
              ++  + +L  +D+L++ G G
Sbjct: 445 CFLLKFLMNLLRDKDLLLIQGAG 467


>gi|256372027|ref|YP_003109851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008611|gb|ACU54178.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 437

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 133/418 (31%), Gaps = 71/418 (16%)

Query: 48  AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
           AIVG + D               +VVS     +     +  + P++        L    +
Sbjct: 63  AIVGARFD--------------LVVVSPGIRTERVE-RLGLDGPVIG----ELELGYLLA 103

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                    I AVTGT+GKS+V +    +    G  +   G   T               
Sbjct: 104 A------APITAVTGTNGKSTVTTLTASML---GDGAVAAGNLGTP-------------- 140

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 LS ++  G   + VE SS  L        +    +  NL  +H+DYH + +AY 
Sbjct: 141 ------LSAVADSGARRLVVEVSSFQLVWAPTF--RASVATVLNLTPNHLDYHGSFEAYR 192

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK RL E L P +       + A     + R         +       +    +     
Sbjct: 193 AAKARLIERLAPGDVAVWPVGEGAVDAIAIPRGVEVRTFSATARDADYRVEHGALVGPDG 252

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  V +   G+             V N L A  L  A G +         +   +  R +
Sbjct: 253 RTLVRVEELGRR--------APHDVANMLAAWALAEASGAELERARRVAREFRGLAHRLQ 304

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V        +    A T  +    +++          VV   GG         +  +A 
Sbjct: 305 VVAVRGGLTYVDDSKATTPEAAVAAVRSFDR-------VVLIAGGRTKGTGFERLRDVAE 357

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +A +  +       E   ++ A++   +P  +E  +  EA+  A E      V+++A
Sbjct: 358 RIAGVVAI------GESAHRVVADLGDAVPWIVEANSMDEAVAVASERALPGTVVLLA 409


>gi|205353478|ref|YP_002227279.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205273259|emb|CAR38224.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628571|gb|EGE34914.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 422

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 116/391 (29%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPT 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V            V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SWLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +  +A + AI+    +D ++V G
Sbjct: 376 N----VYDSVAQAWQAAIDAAQPEDTVLVCG 402


>gi|42524582|ref|NP_969962.1| hypothetical protein Bd3200 [Bdellovibrio bacteriovorus HD100]
 gi|62900538|sp|Q6MIF8|MURD_BDEBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39576791|emb|CAE80955.1| murD [Bdellovibrio bacteriovorus HD100]
          Length = 462

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 112/366 (30%), Gaps = 41/366 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            F++    +    I+ +TGT+GK++VA   + I   SG+ ++  G               
Sbjct: 105 EFSAGFIKEP---IIGLTGTNGKTTVAKITEAILTESGVKTWVGG--------------- 146

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                V  E SS  L+             FTNL  +H+D +++ 
Sbjct: 147 ---ANEKPLVDYLRLDDKAQVVIAEVSSFMLEHCDTF--NPGNIVFTNLAENHLDRYRSM 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y NAK R+F+      +  +   D+A  +     A   G              +  + 
Sbjct: 202 EEYVNAKRRIFKNTNQATTSILNADDNAVVELARDPAVQRGRIFYFSRKPALEPQIMNIG 261

Query: 284 -AIHNKQQVTISVEGKDFDFLFPLPGEFQVY---NALVAAGLCIAIGIDSALVLEHLEKL 339
            A++   ++ +    +   F          +   N + A       G     V + +   
Sbjct: 262 GAVNIGDEIRVRTGPEIESFNIKGMKMRGKHSVENIMAAILASREHGATREAVQKVINTF 321

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +P R E+V             A   +++   L             V    G +D    
Sbjct: 322 TGLPHRIEYVRKVGGVMFYNDSKATNVHAVLRALDTFDE-------NVILIAGGKDTNLN 374

Query: 400 PIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
               +          I+       E  E+I  + +         G   EA+  A +    
Sbjct: 375 YEPLRTSVKRKVKTLILV-----GEAKERINRD-LGDFSETFLIGTFEEAVLIAYQKSRI 428

Query: 459 QDVLVV 464
            DV+++
Sbjct: 429 GDVVLL 434


>gi|257051689|ref|YP_003129522.1| dihydropteroate synthase [Halorhabdus utahensis DSM 12940]
 gi|256690452|gb|ACV10789.1| dihydropteroate synthase [Halorhabdus utahensis DSM 12940]
          Length = 813

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 9/177 (5%)

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           T+S +G D +   PL GE Q  NA VAA L   +   +   L    +    PGRFE +  
Sbjct: 239 TLSGQGLDVETRLPLLGEHQARNAGVAAALARQVADVTDETLATGLRRAHWPGRFEVLDR 298

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 + +D AH     E + + + T     + +V G   D+D          AL   D
Sbjct: 299 EPL---VVLDGAHNPGGCERVAETLDTFEYDELHLVVGAMCDKDHHGIAD----ALPAPD 351

Query: 412 IAIVT-DDNPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               T  D  R+ED + +              + +   A+   ++     D ++V+G
Sbjct: 352 HVTATHPDVDRAEDEQVVAHAFESETAAEVQTRSDVAGALADTLDAAGPDDAVLVSG 408


>gi|222086443|ref|YP_002544977.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
 gi|221723891|gb|ACM27047.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
          Length = 471

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 91/285 (31%), Gaps = 17/285 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 173 LPADVAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVLCIDHPEVQSLVGRIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-----KDFDFLFPLPGEFQVYNAL 316
                              ++    +   + I            D + P+PG   + NA 
Sbjct: 233 RKIITYGENPQSDVRFSNVRIDGTRSLFDIEIRRRRTGKVIHIKDLVMPMPGRHNISNAT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI +  + + L     V  RF   G    G +++ DY H    ++ +LK  
Sbjct: 293 AAVAVANRLGISNEAIAKGLASFGGVKRRFTLTG-EWNGVKVFDDYGHHPVEIKAVLKAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKI 428
           R    GR+I V      R      +  + A     AD   +       E+P      +++
Sbjct: 352 REACKGRVIAV--HQPHRYTRLASLFEEFAACFNDADSIFLAPVYAAGEEPIEGVDSQEL 409

Query: 429 RAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETV 472
            + I   G        ++ +      E+    D +V+ G G  T 
Sbjct: 410 VSRIKAGGHRDARYLSSQEDLAPLIAEIAQPGDFVVLLGAGSITY 454


>gi|254423500|ref|ZP_05037218.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7335]
 gi|196190989|gb|EDX85953.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7335]
          Length = 505

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 66/422 (15%), Positives = 123/422 (29%), Gaps = 57/422 (13%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A   S  ++   +    PI    +    L          + +  +A+ GT GK++
Sbjct: 106 VVCSTAIGESNAEYKQALALGCPIFHRSDILAAL---------MNEKKGIAIAGTHGKTT 156

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S    +  ++G+                      P+ I   +  ++  +  V      
Sbjct: 157 TSSITGYLLLKAGVD---------------------PTIIIGGEVSAWCGNAYVGQSDYV 195

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D++ +         +   +            
Sbjct: 196 VAEADESDGSLVKLSSQIGVITNIELDHPDHYTSLDQVVAIFDQFVTKCKTVVGSI---- 251

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  V  R        +    +  +  +  V          +       +   PL G
Sbjct: 252 ---DCPTVRDRIQPTISYSVEAEAKADYKAINIVETADGMTADILERGKLLGNLTIPLLG 308

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N L A  +   + +    +  HL        RFE  G          DYAH  + 
Sbjct: 309 LHNLSNTLAAIAVARLLHVSFESIQTHLPNFKGARRRFEHRGF-HNEILFVDDYAHHPSE 367

Query: 369 LEMILKNIRTITS--------GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDN 419
           ++  L   +   S         RI+ VF      R             + AD  +VTD  
Sbjct: 368 IKATLAAAQVQRSQQLPSGRGRRIVAVFQPHRYSRATTLLSEF-STCFEGADRLLVTDIY 426

Query: 420 PRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVH 473
              E        EK+   I   +P     G      R  +  L+  D+++    G+    
Sbjct: 427 SAGEANLTGITGEKLADVIAQHLPSTEYCGTLENTKRVLMTSLSSGDIVIFLTAGNLN-Q 485

Query: 474 IV 475
           I+
Sbjct: 486 II 487


>gi|315293602|gb|EFU52954.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 153-1]
          Length = 445

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEFSARLGESDFFVIEAD 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 149 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|87123641|ref|ZP_01079491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
 gi|86168210|gb|EAQ69467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
          Length = 466

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 127/401 (31%), Gaps = 43/401 (10%)

Query: 70  AIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+VVS           A  +    ++            A      +    + +TGT+GK+
Sbjct: 72  AVVVSPGIDWNHPTLEALRQQGVAVI---------GEMALAWQFLNRTPWIGITGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL-AKALSYLSSQGVTHVS 186
           +V   +Q +    GL +   G     +         T   + L A A +         + 
Sbjct: 123 TVTQLLQHVLSSGGLHAPMAGNVGHSA---------TELALSLSAVAPNDGDPATPDWLV 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS+ ++   +       G +T L  DH++ H T +AY   K  L E    +   A  
Sbjct: 174 MEMSSYQIEAAAIVA--PRIGIWTTLTPDHLERHGTLEAYRAIKRGLLERSQIRIFNA-- 229

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                 S    +RA       +S    G       +                       +
Sbjct: 230 ----DDSDLSRQRASWDHGLWISAAGAGDGATAADLWCDAEGVVHCRRRGPLFPASALAM 285

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+    N L+     +  G++  ++   L     VP R E +G            A   
Sbjct: 286 PGDHNRQNMLLVTAAALEAGLEPEVIAAALRTFPGVPHRLERLGELKGMQVFNDSKATNF 345

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++  + L+++      R  VV   G  +       +  +      + +       +E+  
Sbjct: 346 DAAVVALRSVP-----RPAVVLAGGQTKQGEAGEWLTLMGERSCAVVLYGS---GAEELA 397

Query: 427 KIRAEIIHGIPG-FIEKGNRIEAIRTAIEM---LNKQDVLV 463
            + +    G PG      +   A+  A+++   L    +L+
Sbjct: 398 NLLS--SSGYPGQIRRCDDLDAAVPIALDLGRQLRAGTLLL 436


>gi|99080524|ref|YP_612678.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
 gi|122984382|sp|Q1GIV0|MURC_SILST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|99036804|gb|ABF63416.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
          Length = 469

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 98/314 (31%), Gaps = 22/314 (7%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +    S         + VEA       +RL          TN+  +H+++        + 
Sbjct: 148 IHAYGSNARMGQGEWMVVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGDFDRLRD- 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   LP    A+   D A  + ++ R  +          Q     +          
Sbjct: 204 GFYEFVSNLPFYGLAVCCTDHAEVQALVGRITDRRVVTYGFNAQADVRAVNLTYKGGVAH 263

Query: 290 QVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +  +   K      P+PG+  V NAL A  +C  +G+    +   L     V  RF 
Sbjct: 264 FDILLQAEGQKIEGCTLPMPGDHNVSNALSAVAVCRHLGMKREEIRTALAAFGGVNRRFT 323

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQGKRPIMG 403
            VG    G  I  DY H    +  +LK  R        GR+I V      R      +  
Sbjct: 324 KVG-EVDGVTIIDDYGHHPVEIAAVLKAARQAIGTEGEGRVIAV--HQPHRYSRLSNLFD 380

Query: 404 KIALDL--ADIAIVTDDNPRSEDPEK-------IRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                   AD+  + +     EDP +       +   I HG        N  + +R   E
Sbjct: 381 DFCACFNDADVVAIAEVFAAGEDPIEGASRDDLVAGLIRHGHRHARAILNEDDLLRLVRE 440

Query: 455 MLNKQDVLVVAGKG 468
                D++V  G G
Sbjct: 441 QTRPGDMVVCLGAG 454


>gi|125973899|ref|YP_001037809.1| FolC bifunctional protein [Clostridium thermocellum ATCC 27405]
 gi|256005020|ref|ZP_05429991.1| FolC bifunctional protein [Clostridium thermocellum DSM 2360]
 gi|281418062|ref|ZP_06249082.1| FolC bifunctional protein [Clostridium thermocellum JW20]
 gi|125714124|gb|ABN52616.1| FolC bifunctional protein [Clostridium thermocellum ATCC 27405]
 gi|255990988|gb|EEU01099.1| FolC bifunctional protein [Clostridium thermocellum DSM 2360]
 gi|281409464|gb|EFB39722.1| FolC bifunctional protein [Clostridium thermocellum JW20]
 gi|316939898|gb|ADU73932.1| FolC bifunctional protein [Clostridium thermocellum DSM 1313]
          Length = 428

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E +          +D AH +   + + + ++T   G+ I VF  G  +D+     
Sbjct: 292 WPGRLEILKKEPI---FLIDGAHNAEGAKTLSEFLKTYFPGKKI-VFIIGVLKDKDF-KS 346

Query: 402 MGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           M ++   LA+  I VT ++ R+   E +   + +           + A+  ++++  K  
Sbjct: 347 MIEVCAPLAEDIITVTPNSDRALPAETLAQNLENYCKNVSISDTIVNAVEKSLKIAPKDG 406

Query: 461 VLVVAG 466
           V+   G
Sbjct: 407 VICAFG 412


>gi|300088796|ref|YP_003759318.1| FolC bifunctional protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528529|gb|ADJ26997.1| FolC bifunctional protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 448

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---IVVFGCGGDRDQGK 398
            PGRF+ V          +D AHT  +    + ++R++   R    ++V G   D+D   
Sbjct: 305 WPGRFQIVSRRPW---TIIDGAHTPAAAAEFVGSLRSMLLDRPRPAVLVIGVSADKDV-- 359

Query: 399 RPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              M +      D+ I V   +PR+    ++               +  +A+++A  +  
Sbjct: 360 -AGMAEPLAPFFDVVIAVATRHPRAMPAGRLADAFRPASADVRTADSVKDAVKSARAIAG 418

Query: 458 KQDVLVVAG 466
            + ++ V G
Sbjct: 419 DEGLVAVTG 427


>gi|124022231|ref|YP_001016538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123962517|gb|ABM77273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 460

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 87/274 (31%), Gaps = 22/274 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A           +A+TGT+GK++V   +  + + +GL +   G              
Sbjct: 98  GEMAVAWRSLSHLPWIAITGTNGKTTVTHLLNHVLESNGLKAPMGGNVGHA--------- 148

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  +A      ++Q    + +E SS+ ++      I    G +TNL  DH++ H T
Sbjct: 149 ----AAEIALKWRQPNAQRPDWLVMELSSYQIEA--APEIAPRIGIWTNLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 A  ++   LL +    I   DD                               +
Sbjct: 203 LD----AYRKIKRGLLERSEIRIFNGDDPDLSSQRSSWDKGLWVSSEGPGTANHRADFWI 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A    +    ++          +PG+  + N L+        G+ +  +   L     V
Sbjct: 259 DAEGLVRDPQGALFAAS---ALAMPGQHNLQNLLMVTAAARQTGLPAKAIEASLRSFPGV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           P R E +G   +        A   ++  + LK +
Sbjct: 316 PHRLEELGHIQQMSVYNDSKATNYDAACVGLKAV 349


>gi|123441648|ref|YP_001005633.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088609|emb|CAL11404.1| putative FolC bifunctional protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 422

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 19/195 (9%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEH 335
             +     +  Q          D          V  A  A  L +           V+  
Sbjct: 226 AWQFSQHGSFDQPKNGWNWLCGDRQLNDLPLPNVPLANAATALAVLHYSGLSLSEDVILQ 285

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDR 394
             +   +PGRF+     S    + +D AH  ++   +   +  +   G++  V G   D+
Sbjct: 286 GLQAASLPGRFQI---ISEQPLLILDVAHNPHAARYLTDKLAQLPKQGKVRAVVGMLSDK 342

Query: 395 DQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           D G     G +A   +  D       + PR         ++   +    +  +   A R 
Sbjct: 343 DIG-----GTLACLSEQVDEWYCAPLEGPRG----ASAEQLAEHLAQSRQFSDVETAWRQ 393

Query: 452 AIEMLNKQDVLVVAG 466
           A++    QDV++V G
Sbjct: 394 AMQDAEPQDVVIVCG 408


>gi|145588356|ref|YP_001154953.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|189029017|sp|A4SV75|MURC_POLSQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145046762|gb|ABP33389.1| UDP-N-acetylmuramate--L-alanine ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 478

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 116/373 (31%), Gaps = 51/373 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           AEA+V+S+A +  +    A   +  P++     R   L        G      +A+ GT 
Sbjct: 65  AEAVVISTAVAGNNPEVLAARAAKIPVIQ----RAVMLGELMRLKQG------IAIAGTH 114

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +    G           ++S   + RL     I +    S  S      
Sbjct: 115 GKTTTTSLVASVL-AEGDLDPTFVIGGKLNSAGANARLGRGDFIVVEADESDASFLQ--- 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +       TN+  DH+D +Q   A        F + +P    A
Sbjct: 171 -----------------LFPAMEVVTNIDADHMDTYQHDMARLKQAFVQFIQRMPFYGVA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DDA  ++++        R               V A   +   T+           
Sbjct: 214 VLCIDDANVRDIIPFVSQPILRYGLSEDADI--RASNVRADGTRMHFTVERRTVRRHGNK 271

Query: 305 PLPGE--------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--- 353
           P P            V NAL A G+   +G+    +++ L +   V  RF+  G      
Sbjct: 272 PGPLNVTLNLPGLHNVRNALAAIGIATELGVGDQAIIKALSEFSGVGRRFQRYGDIPLAS 331

Query: 354 -RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLA 410
                +  DY H    +   L   R     R  +V      R    R   G+        
Sbjct: 332 GGKFTLIDDYGHHPVEMAATLAAARGAYPDRR-LVLAFQPHRFTRTRDCFGEFVQVLKNF 390

Query: 411 DIAIVTDDNPRSE 423
           D  ++T+  P  E
Sbjct: 391 DALVLTEVYPAGE 403


>gi|221635661|ref|YP_002523537.1| folylpolyglutamate synthase (folylpoly-gamma-glutamatesynthetase)
           [Thermomicrobium roseum DSM 5159]
 gi|221157604|gb|ACM06722.1| folylpolyglutamate synthase (folylpoly-gamma-glutamatesynthetase)
           [Thermomicrobium roseum DSM 5159]
          Length = 454

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 54/384 (14%), Positives = 113/384 (29%), Gaps = 42/384 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + + GT GK S A+ +  + Q +G            +   +      P        L 
Sbjct: 53  RSVHIAGTKGKGSTAALLSSMLQAAGYRVGLYTSPHLHTLRERIQIDGQPIAPETFGTLM 112

Query: 176 YLSSQGVTHVSVEASSHGLDQ----------------------------HRLDGIKLIAG 207
              ++    +       G                                RLD   +I  
Sbjct: 113 AELAEVDAALQRAHPDWGAATAFELVTVLAFAAFARVPVDIAVIEVGLGGRLDATNVILP 172

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               + R   D+     +   A  R    ++    P +    +  +  V++         
Sbjct: 173 DVALITRIGYDHMAILGSTLAAIAREKAGIVKPGRPVVSAPQEPEATRVIEAVAQERGAP 232

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L +G +   +         +     ++    D         + +     +A+   +A   
Sbjct: 233 LWLGGRDWQVTGTWRRFAFHAPGWELA----DLALALRGSHQVENAGVALASLPWLARVE 288

Query: 328 D--SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRI 384
                  +       V PGR E +        + VD AH   S + + + +       R+
Sbjct: 289 MVAPESAIRQGLATAVWPGRLELLRE---NPSVVVDGAHNRESAQRLAEAVHESFRWRRL 345

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEK 442
            +V G   D++  +  I+  +A     +  V    PR+   E++ A              
Sbjct: 346 WLVLGIMRDKEIER--IVAALAPLADALFAVEGFAPRAASAERLLAAWAASTVGKPAASY 403

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +A+R A+E  +  D+++V G
Sbjct: 404 RSVEDALRAALEQADPADLVLVTG 427


>gi|49475854|ref|YP_033895.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella henselae str.
           Houston-1]
 gi|59798262|sp|Q6G2Q6|MURC_BARHE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49238662|emb|CAF27908.1| UDP-N-acetylmuramate--alanine ligase [Bartonella henselae str.
           Houston-1]
          Length = 475

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 100/283 (35%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+ R+H+D++ +  A  +A  R F E +P    A++  D    + +  R  
Sbjct: 173 LPADIAVVTNIDREHLDHYGSFAAVRDA-FRQFVENVPFYGFAVLCIDHPEVQSLASRID 231

Query: 262 NAGCRVLSVGYQGKFIHL------KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +          Q     L      +K       +      E +  + + P+ G+  V NA
Sbjct: 232 DRWVITYGANPQADIRFLNLSMDGQKTYFDVFMRSRKTGRETELKNLVLPMSGQHNVSNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +GI +  + + L     V  RF  +G + RG  I+ DY H    ++ +L  
Sbjct: 292 TAAIAIAHELGISNESIKKGLAGFGGVKRRFTQIG-SWRGVEIFDDYGHHPVEIKAVLCA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R    GR+I +      R      +    A     ADI ++       E+P       +
Sbjct: 351 ARESAKGRVIAI--AQPHRYSRLYHLFDDFAACFNDADIVLIAPVYAAGEEPITGFGARE 408

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +   I + G           + +          D +V  G G+
Sbjct: 409 LVEHIQMAGHRDVRLIDCLEDVVSIVSTFSKSGDYVVFLGAGN 451


>gi|307564720|ref|ZP_07627250.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
 gi|307346648|gb|EFN91955.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
          Length = 459

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 119/387 (30%), Gaps = 61/387 (15%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQR--SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              L   GT GK++ +S    I  +   G ++F  G +    +    +  +    I   +
Sbjct: 112 HRGLCFAGTHGKTTTSSMCAHIMHQSSVGCTAFLGGISKNYGTNYILSNKSDYVVIEADE 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                                        ++      T+   DH+D + T++        
Sbjct: 172 FDRSFHW----------------------LRPWMTVITSTDPDHLDIYGTKE------AY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L       E      A   +    MK     G RV     +    H   V          
Sbjct: 204 LESFRHYTELIKAGGALIIHKDLEMKPNVQEGVRVYEYSREEGDFHADNVRIKDGTIIFD 263

Query: 293 ISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                +   D     P    + N++ A  +    G+    + E ++    V  RF+F   
Sbjct: 264 FISPIEPIKDVELGQPIPINIENSIAAMAMAQLNGVIPNEIREGIKTYSGVDRRFDF-KV 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
            +    +  DYAH    +    K+++ + S R I V        R +         +L  
Sbjct: 323 KNAKHVVLSDYAHHPKEILQSAKSLKELYSNRKITVIFQPHLYTRTRDFYKEFA-YSLSF 381

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---------- 459
            D  I+T+  P  E+P       I G+   +   N  E ++   +M+ K           
Sbjct: 382 FDEVILTEIYPAREEP-------IEGVTSKLIYDNLKEGVQK--QMILKDSVLSFVKSRD 432

Query: 460 -DVLVVAGKGHET------VHIVTNGE 479
            DVLV+ G G+          I+ + E
Sbjct: 433 FDVLVILGAGNLNDYVSQISQIILDKE 459


>gi|229163413|ref|ZP_04291364.1| Folyl-polyglutamate synthetase [Bacillus cereus R309803]
 gi|228619982|gb|EEK76857.1| Folyl-polyglutamate synthetase [Bacillus cereus R309803]
          Length = 434

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 90/309 (29%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           ++V K  H     +            + 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVQNEEALQVIRKVAKENHANLYEIGKHFTALHKQSSED 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 239 GEQFDFTCPFATFDDVQISMKGSHQVGNAALALMAVMYVKTYVSFLIEEEEIRTGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        + +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WVGRFEKL---QNNPDVIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLN 457
            M      ++D  I T           I A+ +     I   +   N  EAI T +EM+ 
Sbjct: 354 -MVGQLETISDEIIFTT----FAFDRAISADKLATYSQIESKLVFENWKEAIDTKLEMIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 ENDVFIITG 417


>gi|183221142|ref|YP_001839138.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911233|ref|YP_001962788.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775909|gb|ABZ94210.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779564|gb|ABZ97862.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase); putative
           signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 469

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 133/412 (32%), Gaps = 30/412 (7%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V SSA + +      R     + + +  +F+ L  S       +  ++V G+ GK+S  
Sbjct: 65  VVYSSAINDKHKDVFNRIQNLNIPLKHRSEFMHLLVSN------QKSISVAGSHGKTSTT 118

Query: 131 SFVQQICQRSGLSSFQI--GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           + V QI    GL    +  G TS +            +     ++             + 
Sbjct: 119 TMVSQILTEVGLDPTIMIGGDTSLLQKRGGKMGKGDYAVYESDESDGTFLRHKANIRLLT 178

Query: 189 -ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
              +  LD +R       A               +             + + +     + 
Sbjct: 179 NIDNDHLDYYRTRERLEEAFL-------DYMGFGSPGEVVLFVGDPGIKSVLEIHYRNLT 231

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +     ++    +      S         +  V     + Q+   +E + +    P P
Sbjct: 232 FHNELHLNLLVTKSHTNEEWFSYFLSQFQKQITVVLYEVKENQLYFQLENQSYTLELPYP 291

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N LVA      IGI  +   + L +   V  R E +G       +  DY H   
Sbjct: 292 GVHYLTNGLVALTCAYRIGISPSQSSQILSRYIGVKRRQEILGV-WNEVTVIDDYGHHPT 350

Query: 368 SLEMILKNIRT--ITSGRIIVVFGCGGDRDQGKRPIMGKIALD---LADIAIVTDDNPRS 422
            ++M++++++      G++ V+F         +  ++ +        AD   +       
Sbjct: 351 EIKMVIQSLKDKIKNKGKLHVIFQPHR---YTRTKLLLEDLAKSLLGADFVFLLPIYSAG 407

Query: 423 EDPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           E+P +          + G    +  GN  E +      LNK D+L+  G G+
Sbjct: 408 ENPMEGITSNRFLPYLTGSQTTMLDGNIREDLEQIKSHLNKGDLLLCLGAGN 459


>gi|160947642|ref|ZP_02094809.1| hypothetical protein PEPMIC_01577 [Parvimonas micra ATCC 33270]
 gi|158446776|gb|EDP23771.1| hypothetical protein PEPMIC_01577 [Parvimonas micra ATCC 33270]
          Length = 425

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 11/137 (8%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVF 388
              + +       P RFE V  +       +D AH  + +E  + N+     + + I +F
Sbjct: 275 NESIYNGFSTVTWPCRFELVSKSPD---FILDGAHNIDGIEKFVSNMNFYYKNNKKIAIF 331

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIH-GIPGFIEKGNR 445
           G   D+D      M +  +   D   +T   D+ R+ +  +++ +I            N 
Sbjct: 332 GVLADKDYN---EMLEKIVPCFD-VFLTVRPDSERAMEAYELKEKIEALTEKKVYSFENY 387

Query: 446 IEAIRTAIEMLNKQDVL 462
            EAI  A E+ +K DV+
Sbjct: 388 QEAIDKAFEISSKDDVI 404


>gi|309808628|ref|ZP_07702520.1| bifunctional protein FolC [Lactobacillus iners LactinV 01V1-a]
 gi|308168102|gb|EFO70228.1| bifunctional protein FolC [Lactobacillus iners LactinV 01V1-a]
          Length = 365

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 360 VDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH  ++   + + I  +  GR  I++ G   D++  K   M +I  +++   I+T+ 
Sbjct: 250 IDGAHNPDAAYNLAQTIINLRHGRRVIMILGFLKDKNYQK---MIQIYQEISHDFILTEP 306

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D+ + + P  I A+  +     ++  N   A++ A +     D++VV G
Sbjct: 307 DHLQRKLPVAILAQ--NFNNHVMQAVNVRSALKIARQNAKPDDLIVVTG 353


>gi|257063505|ref|YP_003143177.1| folylpolyglutamate synthase/dihydrofolate synthase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791158|gb|ACV21828.1| folylpolyglutamate synthase/dihydrofolate synthase [Slackia
           heliotrinireducens DSM 20476]
          Length = 427

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 59/426 (13%), Positives = 122/426 (28%), Gaps = 25/426 (5%)

Query: 49  IVGNKEDGHLFIPQA----IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSL 104
           I  +  D H ++ Q+    +  G     +    +L +         P++ +  T      
Sbjct: 5   IRDDAFDAHAYLNQSSWTQVKLG-----LERITTLLERLGHPEQAYPVVHIAGTNGK-GS 58

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            ++   G            +    +    +    R  +    +   +     A D     
Sbjct: 59  TSAFTAGILQAAGFRTGLFTSPYILEFNERIQVNRENIGDADLHDIALAVRQAADGLEEE 118

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P+P  L  A+++   +      +     GL   R D   +   +   +    +D+     
Sbjct: 119 PTPFELVTAVAFEYFRRAE-CDIVVLEVGLG-GRYDATNVTTPAVCAITPIAMDHVGVLG 176

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                       ++    P + Y     ++ V++    A    +     G+     +   
Sbjct: 177 NTLAEIAGEKAGIIKPGVPVVCYTQKPEAEAVIRAEARAIGAPVMTPRFGRIHARMEGLQ 236

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                     V+ +      P           +A  L       +   ++   +    PG
Sbjct: 237 QVFSYDGINDVKLRLLGAYQPCNAVM---AIEIARTLRNQGFDIADEDIKRGLEETRWPG 293

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMG 403
           RFE V T        VD  H     E++  ++R       +  V G   D+     P M 
Sbjct: 294 RFELVAT---DPVTIVDGGHNEQGAEVLADSLRRYFPDTPVTFVMGVLKDKQY---PQMI 347

Query: 404 KIALDLADIAIVTD--DNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
              + LA         ++ R+   E +   +   G        +  EA++TA       D
Sbjct: 348 NYVVPLAKRFYCATPPESERALSAEDLAQALREAGAADARPCASIAEAVQTARAQAGPDD 407

Query: 461 VLVVAG 466
           V+   G
Sbjct: 408 VVCCFG 413


>gi|257066466|ref|YP_003152722.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
 gi|256798346|gb|ACV29001.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
          Length = 462

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 118/397 (29%), Gaps = 40/397 (10%)

Query: 78  SLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
             ++  A  + N P++    TR  FL            +N +AV+G+ GKS+  S + +I
Sbjct: 83  DNEELIAAKKLNVPVV----TRGVFLGALMRNY-----KNSIAVSGSHGKSTTTSMISKI 133

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              S   +  +     +     + R+ +   +                            
Sbjct: 134 LMHSDKDATIL-LGGELDEMKGNVRVGSEEYLVTEACEYK-------------------- 172

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             +           N+  DH+DY++      +                    ++      
Sbjct: 173 GNIRYYYPQTLIILNIDEDHLDYYKDLDDIVDTFREYLSNQDENSMTITNLNEENNRLIF 232

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                                   K   I           G    F   + G   + NA+
Sbjct: 233 DSVKGKLITYAQENDEADYCAFNIKFDEIGRPNFDLRMRNGDVEHFELGVIGRHNINNAM 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            +       GID   + +++ K   +  R + +G       I  DY H  + +++ L  +
Sbjct: 293 ASIIATYENGIDIETIRKNILKYEGLDRRMQIIG-EVDDATIMTDYGHHPSEIKVTLDAL 351

Query: 377 RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DP----EKIR 429
           +  T GR+I V+      R +           D +D  I+TD     E  DP    + + 
Sbjct: 352 KEHTKGRLICVWQPHTYSRTKALFDDFL-TCFDSSDEVIITDIYAAREKFDPSIHSKDVV 410

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             ++         G   +      + + K D+++  G
Sbjct: 411 DALVKKGINAKYIGKFEDCRDYIYKEIKKDDLVLTTG 447


>gi|90424796|ref|YP_533166.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
 gi|109892731|sp|Q211T9|MURC_RHOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|90106810|gb|ABD88847.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisB18]
          Length = 467

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 110/333 (33%), Gaps = 40/333 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
            GA+ +VVS+A    +          I VV   R+   L+           ++ +A+ GT
Sbjct: 65  AGADVVVVSTAIKRDNPELLAARAQRIPVV---RRAEMLAELMRL------KSCVAIAGT 115

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S V  +    G     +     I+++  + RL     + +    S        
Sbjct: 116 HGKTTTTSMVAALLDA-GEFDPTVINGGIINAYGTNARLGAGEWMVVEADESD------- 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  +H+D+ +T  A   A  R F E +P    
Sbjct: 168 -------------GTFLKLPADVAIVTNVDPEHLDHFKTFDAVQEA-FRDFVENVPFYGF 213

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEG 297
           A++  D    + ++ +  +          Q     L               +        
Sbjct: 214 AVMCIDHPVVQALVGKIEDRRIITYGENPQADVRLLDLTPNGGSSAFRVAFRDRKAGTAH 273

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +  D + P+PG     NA  A  +   +G+    + + L     V  RF   G    G  
Sbjct: 274 EIADLVLPMPGRHNALNATAAIAVAHELGLSDDTIRKALAGFGGVRRRFTKTG-EWNGVT 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           I  DY H    +  +LK  R  T G++I V   
Sbjct: 333 IIDDYGHHPVEIAAVLKAARESTKGKVIAVVQP 365


>gi|260566065|ref|ZP_05836535.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 4 str. 40]
 gi|260155583|gb|EEW90663.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 4 str. 40]
          Length = 471

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 94/285 (32%), Gaps = 21/285 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEMQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +          Q +   + +             +       +  D   P+PG   V NA 
Sbjct: 232 DRRIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNAT 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI S  +   L     V  RF   G +  G  I+ DY H    +  +LK  
Sbjct: 292 AAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTG-SWNGVEIFDDYGHHPVEIRAVLKAA 350

Query: 377 RT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------ 425
           R       GR++ +      R      +  + A     AD  IV       E+P      
Sbjct: 351 REATSQAGGRVVAIV--QPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           E++ + I              EA+      +    D +V  G G+
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGN 453


>gi|254447128|ref|ZP_05060595.1| FolC bifunctional protein [gamma proteobacterium HTCC5015]
 gi|198263267|gb|EDY87545.1| FolC bifunctional protein [gamma proteobacterium HTCC5015]
          Length = 427

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 121/385 (31%), Gaps = 27/385 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQD 159
           ++ A          ++ V GT+GK S  +F++ I +++G                    D
Sbjct: 32  AVLARLSLDFSQSIVVTVAGTNGKGSTLAFLESIYRQAGYRVGLFTSPHFLHYCERIRID 91

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ-----------------HRLDGI 202
               +   +  A A        ++    E S+                       RLD  
Sbjct: 92  GDRVSEQAVCDAFAAIDSVRGEISLTYFEFSTLAALWLFARESLAVILLEVGLGGRLDAS 151

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +I      +    ID+ +         +   +  + + +   I  D      + + A  
Sbjct: 152 NVIDADVGIVTSVSIDH-RDWLGDNREDIGREKAGIYRRNRMAISGDPHPPHSLREVASI 210

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G      G Q +     +  A    Q      E    + L          +ALVA    
Sbjct: 211 KGSDWQGRGEQFEVFTSSEDRARWRLQWRGEDFEFPYPERLTAPIQLDNAASALVAVLGL 270

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A        ++       +PGR + +G       + +D AH   + + +   +   +  
Sbjct: 271 RAQRPVDKSDMDRGLCQAGLPGRLQVIGQ---NPEVMLDVAHNEAAAKALFGAVAGRSYE 327

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIE 441
           ++ +V G   D++      + +       +A  T  + R+ D  ++ A +        + 
Sbjct: 328 QVHLVLGMLQDKEVRATASVLEALQPHWYLA--TPQSERAMDCRELAAMLPGSAASASVC 385

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  EA R A+    + D+++V G
Sbjct: 386 YASVTEAYRAALGRAGENDLVIVTG 410


>gi|46580907|ref|YP_011715.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601792|ref|YP_966192.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|48428298|sp|P61678|MURC_DESVH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224686|sp|A1VBE9|MURC_DESVV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46450327|gb|AAS96975.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562021|gb|ABM27765.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|311234598|gb|ADP87452.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris RCH1]
          Length = 454

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 132/403 (32%), Gaps = 50/403 (12%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
              +  A +    PI+     R   L+       G      +A+ GT GK++  S    I
Sbjct: 77  DNPEVLAAVEKGIPII----PRAEMLAELMRLRTG------IAIAGTHGKTTTTSLTAAI 126

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
              +G     I     ++++  + RL     +      S                     
Sbjct: 127 FDVAGKDPTVI-IGGRLNAYGANARLGEGEYLIAEADESD-------------------- 165

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                +  I    TN+  DH+D++  Q+    A +    ++    +  +   DD   + +
Sbjct: 166 GSFLCLFPIVNVVTNVDMDHVDFYAGQKEIDEAFVTFMNKVPFYGANVV-CGDDPGVRRL 224

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNA 315
           +        RV++ G+        +V +       T+ + G    +     PG   + NA
Sbjct: 225 L---PQVKRRVVTYGFGKDNALRAEVTSCAETSVFTVFLRGGRLGEVHLGQPGRHNILNA 281

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A G+ +  GI     +E L +   V            G  +  DY H    +   L  
Sbjct: 282 LAAIGVALEAGISPEHCIEGLARFGGVGR-RFERRGERDGVTVVDDYGHHPVEIAATLAT 340

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R++   R +VV        + +  + G+        D  ++T+  P SE P      + 
Sbjct: 341 ARSVYPDRRLVVVFQPHRFSRTQ-ALFGEFCKVFEPVDKLLLTEIYPASEKPIPGVSGQS 399

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
           +   I            +  E I  A+  +L   DVL+  G G
Sbjct: 400 LAQGIRQVSNTDVTYYQSFDE-ILAALPGVLRPGDVLLTLGAG 441


>gi|288800651|ref|ZP_06406108.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332112|gb|EFC70593.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 459

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 119/370 (32%), Gaps = 46/370 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + V GT GK+S ++    I  +S +          IS     N + +    Y+    
Sbjct: 112 HKGICVAGTHGKTSTSTMCAHILHQSNVDCNAF--LGGISKDYGTNYILSKDSEYVVIEA 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                                      ++  A   T+   DH+D + T++AY  +     
Sbjct: 170 DEFDRSFHW------------------LRPYATVITSTDPDHLDIYGTKEAYLESFKHYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             + P  +  I    +     V       G +V          H + +   + +      
Sbjct: 212 TLIQPGGALIIKKGLEMTPAVV------DGVKVYEYSENEGDFHAENIKIENGEITFDFI 265

Query: 295 VEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++ ++     P    + N + A  L    G  +  +   +   H V  RF+F    +
Sbjct: 266 SPIENVYNIQLGQPVPINIENGVAAMALAQICGCTADELRYGMSSYHGVVRRFDF-KIKN 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
               +  DYAH    +    ++++ + + R I          + K       + AL L D
Sbjct: 325 DKHVLLSDYAHHPKEIFQSARSLKQLYNNRKITAIFQPHLYSRTKDFYKDFAE-ALSLLD 383

Query: 412 IAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLV 463
             I+ D  P  E P +      I   +  G+   +            +++  ++  DVLV
Sbjct: 384 EVILCDIYPARELPIEGVTSKLIYDCLKDGVQKQMIHK------EELLDLARERDFDVLV 437

Query: 464 VAGKGH-ETV 472
           + G G  E+ 
Sbjct: 438 ILGAGDIESY 447


>gi|218697983|ref|YP_002405650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218354715|emb|CAV01756.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 55989]
          Length = 457

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|325127799|gb|EGC50707.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis N1568]
          Length = 424

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 125/397 (31%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVGEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAINAEPVSDDTIIASFERIEAARGEISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +    G    +    +D+          ++   +  + +     I   +   K ++ 
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPKSLLS 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V  +    H  +    + + +   S          P P     Y    A
Sbjct: 203 HAEAIGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDGPARNRNALPFPALRGTYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +   +  +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACALTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ 
Sbjct: 319 RRSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQN 375

Query: 431 EIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++    I          EA R A     + D +VV G
Sbjct: 376 KLHEHSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|315652170|ref|ZP_07905167.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           saburreum DSM 3986]
 gi|315485565|gb|EFU75950.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           saburreum DSM 3986]
          Length = 448

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 87/306 (28%), Gaps = 34/306 (11%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +        +   T   +E SS  L+   +   +    +  N+  DH++ H T + Y 
Sbjct: 140 IGIPYTDIADKTNENTVTVLETSSFQLET--VIDFRPKISAILNITPDHLNRHHTMENYI 197

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                   +   +    I+  +DA  +E  KR         S        +L+    +H+
Sbjct: 198 RV-KEDISKNQDENDFCILNYEDAALREFAKRVKAKVVFFSSKERLDNGFYLEGGFIMHS 256

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               +  +          + G     N + A  +    G+   +++      H V  R E
Sbjct: 257 VDGNSTKLLD---TGKLNILGRHNYENVMAATAIAFVYGVPQDIIVNTCYNFHAVEHRIE 313

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---------GRIIVVFGCGGDRDQGK 398
           FV   +             ++    +  +   T                    G +   K
Sbjct: 314 FVKEVNGVKYYNDSKGTNPDAAIQAVLAMPAATYIIGGGYDKGSEYDEWIESFGTK-VKK 372

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             +MG  A  +AD                      HG        +  EA++        
Sbjct: 373 LVLMGATAKKIADC------------------AKKHGFTDIEIVESMEEAVKLCAGEAKA 414

Query: 459 QDVLVV 464
            + +++
Sbjct: 415 GEYVLL 420


>gi|297616870|ref|YP_003702029.1| FolC bifunctional protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144707|gb|ADI01464.1| FolC bifunctional protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 419

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRP 400
            PGR E +   S    + VD AH S+  + + + + ++  G+  I+V G   D+D     
Sbjct: 284 WPGRMEKL---SDDPMVVVDAAHNSDGAKALARALDSVLPGKSRILVCGVLDDKDGE--A 338

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           I+G +        +   ++ R++   +  A      P  +E  +  +A+ TA+  L +++
Sbjct: 339 ILGSLVSRTRMCVVTRPESDRAQKWREKTAIAYRLFPRVVEAEDIEQALSTAVNELQREE 398

Query: 461 VLVVAG 466
            ++V G
Sbjct: 399 YILVTG 404


>gi|331680370|ref|ZP_08381029.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H591]
 gi|324118795|gb|EGC12687.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E1167]
 gi|331071833|gb|EGI43169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H591]
          Length = 457

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|283780165|ref|YP_003370920.1| FolC bifunctional protein [Pirellula staleyi DSM 6068]
 gi|283438618|gb|ADB17060.1| FolC bifunctional protein [Pirellula staleyi DSM 6068]
          Length = 465

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 14/181 (7%)

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRG 355
            +  D    +PG  QV N  +A  +C  +      +     +  +   R +  +   +  
Sbjct: 274 WELNDVELAMPGAHQVRNGAIAIAICHQLVQQGYRISPATIRQGLASARAQARIERVNIR 333

Query: 356 GRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
             + +D AH   S+E +   I +  +S R I++     D++      M    L L D  I
Sbjct: 334 PAVILDVAHNVASIEALADVISQQFSSHRKILILASSRDKETS---AMLGALLPLFDHVI 390

Query: 415 VTDD--NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +T    NPR+ +P ++       +       P      +   A   A+E+   +D++ + 
Sbjct: 391 LTCYLLNPRAVEPPQLLEMARRVLSESKLPEPMLETADSPASAYARAMELAGGEDLVCIT 450

Query: 466 G 466
           G
Sbjct: 451 G 451


>gi|119487890|ref|ZP_01621387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
 gi|119455466|gb|EAW36604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
          Length = 458

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 129/388 (33%), Gaps = 33/388 (8%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VVS           I  +  I +V                 +    + +TGT+GK++ 
Sbjct: 66  LVVVSPGVPWDIPPLEIARHRGIEIV-------GEMELAWRNLNAVPWVGITGTNGKTTT 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  I + +GL++   G     +             +   +  +    + V  V  E 
Sbjct: 119 TALIAAIFKAAGLNAPACGNIGNAACEL---------ALEQQEIRALKIGKSVDWVIAEV 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ ++      +    G +T    DH++ H T + Y+N K +L    L      +I  D
Sbjct: 170 SSYQIESSST--LAPKIGVWTTFTPDHLNRHHTLENYYNIKAKL----LKNSEIQVINGD 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D Y ++   +     C     G      +   +        +  + +         + G+
Sbjct: 224 DPYLRQNADQEWKNACWTSVQGKSKLIGN-PDLGVYIENDYIIQNQQKIIPLKTLKMVGK 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N L+A       GI+   + + +     VP R E VG+      I    A   ++ 
Sbjct: 283 HNLQNLLMAVATARLAGIEPPAIEQAISNFPGVPHRLEAVGSWQDINWINDSKATNYDAA 342

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           ++ L  +         V+   GG+   G      +   + A   ++  D   +E   +  
Sbjct: 343 QVGLAAVEA------PVILIAGGEAKAGDDTQWLQTIQEKAAAVLLIGD--AAEQFSQRL 394

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
            ++              +AI  A E+ +
Sbjct: 395 KQV--NYQTVEIVETMEKAIPKAAELAS 420


>gi|118469061|ref|YP_888503.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium smegmatis
           str. MC2 155]
 gi|166224705|sp|A0R015|MURC_MYCS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118170348|gb|ABK71244.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 482

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 99/272 (36%), Gaps = 14/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D+  + +  + A    F E +      ++  DD  +  +  R    G RV
Sbjct: 187 VVTNIEADHLDFFGS-EQAYTAVFDSFVERIAPGGALVVCTDDPGAAALADRTDALGIRV 245

Query: 268 LSVGYQGKFIH----LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           L  G  G  +       +         + ++ E         +PG     NAL A     
Sbjct: 246 LRYGSTGDNLAGTLLSWEQQGTGAVAHIRLAGEHNPRAVRLSVPGRHMALNALAALLAAR 305

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---T 380
            IG  +  VL+ L     V  RFE VGT + G R++ DYAH    +   L+  RT+    
Sbjct: 306 EIGAPTDSVLDGLAGFEGVRRRFELVGTAA-GARVFDDYAHHPTEVRATLEAARTVVDQN 364

Query: 381 SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIP 437
            GR++V F      R        G  AL +AD  +V D     E P      A +   + 
Sbjct: 365 GGRVVVAFQPHLYSRTATFAHEFG-AALSVADQVVVLDVYAAREQPMAGVSGATVADHVT 423

Query: 438 G-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +          +    DV++  G G
Sbjct: 424 APVTYVPDFSAVAAHVASIARSGDVILTMGAG 455


>gi|260437302|ref|ZP_05791118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810214|gb|EFF69419.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Butyrivibrio
           crossotus DSM 2876]
          Length = 453

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 87/283 (30%), Gaps = 18/283 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM-RLFEELLPKES 242
           +   E SS  L+  R         +  N+  DH++ H T + Y   K      +   +E 
Sbjct: 160 YTVAEISSFQLETIREFA--PRGSAILNITPDHLNRHYTMENYAAVKESITKNQWKVRED 217

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
              +   D        +               K  +L      +   +    V   D   
Sbjct: 218 DYCVLNYDDKVLREFGKTIKNPVYFSRKEKPSKGAYLDGRIIRYFDGKNDYEVMSVD--- 274

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G     N + A  + I  G+   +++  ++    V  R E+V   +         
Sbjct: 275 DMHLFGNHNYENVMAAIAMTIEAGVPLNIIINVIKDFMGVEHRIEYVRDKNGVRYYNDSK 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +S    L+        R  ++   G D+         +   +   + ++       
Sbjct: 335 GTNPDSSIKALEA-----MSRPTILIAGGYDKHSEF-DEFIEAFDNKVKLMVL-----LG 383

Query: 423 EDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +KI    + HG    I+  +  +A++   E     DV+++
Sbjct: 384 QTADKIEETAVRHGFTNIIKTDSLEKAVKICAENAVSGDVVLL 426


>gi|134095970|ref|YP_001101045.1| UDP-N-acetylmuramate--L-alanine ligase [Herminiimonas
           arsenicoxydans]
 gi|166224695|sp|A4G8T7|MURC_HERAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133739873|emb|CAL62924.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Herminiimonas arsenicoxydans]
          Length = 469

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 124/419 (29%), Gaps = 57/419 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    + IA  A+AIV S+A    +          I +V      L+       G    
Sbjct: 56  GH--AAENIAS-ADAIVTSTAVQQDNPEVVAAREKHIPIVPRAM-MLAELMRLRRG---- 107

Query: 116 NILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A+ GT GK++  S V  +    G   +F IG    ++S   + +L     I      
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAEGGLDPTFVIG--GLLNSAGANAKLGAGEFIVAEADE 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       +  +    TN+  DH++ ++            F
Sbjct: 164 SDASFLN--------------------LSPVIEVITNIDADHMETYEHDFEKLKQAFVEF 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            + LP    A++  DDA  +E+M R                   +       + Q   I 
Sbjct: 204 TQRLPFYGVAVLCLDDATVREIMPRISKLITTYGFHED-AMVRAVDAKAVDGHMQFTVIQ 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                       PG   V NA  A  +   +G+      + L +   V  RF   G  S 
Sbjct: 263 DGYAPMQVSLNQPGMHNVQNACAAIAIARELGVSDHATQKALTEFTGVGRRFTRYGEISF 322

Query: 355 G---------GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                       +  DY H        +   R    GR  +V      R    R +    
Sbjct: 323 SAVNDKPAGSFALVDDYGHHPVETAATISAARGAYPGRR-LVLAFQPHRYTRTRDLFEDF 381

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   + T D         + AE+       I   +    +  A+ +  K D + V
Sbjct: 382 V-----KVLSTTD-------MLLLAEVYAAGEQPIVAADGRT-LAHALRVAGKVDPVFV 427


>gi|260896399|ref|ZP_05904895.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           Peru-466]
 gi|308087557|gb|EFO37252.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           Peru-466]
          Length = 398

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 69/391 (17%), Positives = 125/391 (31%), Gaps = 53/391 (13%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L     I      E  + E     R +  G  +F+        GH      + + A  +V
Sbjct: 43  LNEGYEITGSDLSENPVTE-----RLVSKGATVFI--------GHQ--ASNVEK-ASVVV 86

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVA 130
           VS+A + ++          I +V   R+   L+      +G      +AV GT GK++  
Sbjct: 87  VSTAINEENPEVMAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTTTT 137

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V QI   +GL    +     + S   + RL +   +      S  S            
Sbjct: 138 ALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH--------- 187

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      ++ +    TN+  DH+D +             F   LP    AI+  DD
Sbjct: 188 -----------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDD 236

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +E++ R                 I          K    +     + D    +PG  
Sbjct: 237 PVIRELIPRISRQVITYGFSDDADVRIENYHQEGQQGKFT-VVRKGRANLDITLNIPGRH 295

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSN 367
              NA  A  +     I+   +L+ +        RF+ +G    G     +  DY H   
Sbjct: 296 NALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPT 355

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
            +++ +K  R+    + +V+        + +
Sbjct: 356 EVDVTIKAARSGWQDKRLVMIFQPHRYSRTR 386


>gi|255068277|ref|ZP_05320132.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria sicca
           ATCC 29256]
 gi|255047469|gb|EET42933.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria sicca
           ATCC 29256]
          Length = 310

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 16/229 (6%)

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +   + ++  A   G ++L V     F  L+ +   + +     S +        P 
Sbjct: 77  CGQNPAPESLVAHAEAIGAKLLMVQRDFDFASLENIQ-WNYRFHPQHSDDPARNRNSLPF 135

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYV 360
           P     Y    AA     +   +  +   +        L   PGRF+ +          +
Sbjct: 136 PALRGAYQLSNAACALTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVL 192

Query: 361 DYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-D 418
           D  H  ++   + +++  +    +   VF    D+D      + +I  D  D   +   D
Sbjct: 193 DVGHNPHAARALRRSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLD 249

Query: 419 NPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            PR    E ++A++    I       +  EA R A+    + D +VV G
Sbjct: 250 VPRGMTAEALQAKLEAQNIENIQTFTSVREAYRAALAKAGENDRIVVFG 298


>gi|225174291|ref|ZP_03728290.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170076|gb|EEG78871.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 465

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 156/478 (32%), Gaps = 50/478 (10%)

Query: 1   MK---LQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFV-AIVGNKEDG 56
           MK   L++++     E+I   S       E +I +V + S  ++ G +F     G   D 
Sbjct: 1   MKALPLKEILAVIDGEVIAGSS-------EFEIIDVKTSSPGLRNGTLFFHTKKGLTIDQ 53

Query: 57  H--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           +   +      +   AIV      L      +  N  ++ VDN+   L+ F S   G   
Sbjct: 54  NFNRY------KKRVAIVTDKKIDLD----QLNDNVTLITVDNSVNALASFTSYYRGLF- 102

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + V G +G +   +  + +               +++             + L   L
Sbjct: 103 --TIPVVGITGTAGKTTTKEMLAHILRGEQNVQCTYKSMNGIV----------LNLKYLL 150

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                  V    +  S  G  +      K   G  TN+G  H++  +T + Y  AK  + 
Sbjct: 151 GINEDTDVAVFEMGVSYPGNIRKSGAVFKPSIGMITNIGTAHLETCKTLERYIGAKGEML 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E L  K    ++   D  + + +      G              + ++     K    + 
Sbjct: 211 EALDYKGQ--LLLNSDDENIKKIDLHPFKGQVYYFGQKSECAYRISQIEYAAEKMVFQLH 268

Query: 295 VE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           V+         P  GE  VYNA  A       G+D +  +E +     +          +
Sbjct: 269 VKGHSSKRVYVPGLGEQCVYNAAAAIAAAHLTGMDLSSCIERIGSFKQMERHVSVERGLN 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFG---CGGDRDQGKRPIMGKIALDL 409
           R   I   +    +S    LK ++ I  + + + VFG     G +   +   +G    +L
Sbjct: 329 RATIIDDTWNSNPSSAYAALKVLQKIAENKKSVAVFGKLQRLGAKQHEEHVKLGARMKEL 388

Query: 410 ADIAIVTDDNPRSEDPEKIRA---EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               ++T      +D + I     +            +  E     + + ++  V+++
Sbjct: 389 GISCLITI----GKDAQDIGDAAIQAGIAQANVFNVLSAEELQEKLLSITDENTVVLL 442


>gi|167614184|gb|ABZ89690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 440

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 115/358 (32%), Gaps = 47/358 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+++TGT+GKS+VA+ V++I ++SG   F  G                    
Sbjct: 100 FSRETKCPIISITGTNGKSTVATMVKKIAEKSGYKVFLGGNIGFPVL------------- 146

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   + +Q      +E SS  L+      +K       N+  DH+D +      + 
Sbjct: 147 -------EMLNQKANLYILELSSFQLET--TFSLKSKIAVVLNITEDHLDRYPEGFEQYK 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                           +            K+  + G                     + K
Sbjct: 198 KIKLSIYNQAEICLIKLKKGGKKPFDTQFKKYISFGI-----------CQNNNYHINYEK 246

Query: 289 QQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           ++  +  + K       +   G     NAL++  +  A+  +  + +  L++   +P RF
Sbjct: 247 EKAILYCKNKKVLDTSNMFLNGYHNYENALISLAISDAMKFNREIAINTLKQFSGLPHRF 306

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           + V  N+    I    +   +S ++ L+N+    + +  +    GGD       I+ +  
Sbjct: 307 QTVHINNNISWINDSKSTNVDSTKVALQNL----NIKGTIWLLLGGDGKSSNFNILKEYF 362

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             L         +       K+           +      +AI    + +   DV+++
Sbjct: 363 EKLKIKIYCFGKD--GLSLSKLCK------KKSVYVETLKQAIILISKKIQPGDVVLL 412


>gi|114797447|ref|YP_761699.1| UDP-N-acetylmuramate--L-alanine ligase [Hyphomonas neptunium ATCC
           15444]
 gi|123027693|sp|Q0BXU4|MURC_HYPNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114737621|gb|ABI75746.1| UDP-N-acetylmuramate--alanine ligase [Hyphomonas neptunium ATCC
           15444]
          Length = 474

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 128/424 (30%), Gaps = 54/424 (12%)

Query: 67  GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +++S+A      +  A   +  P++   N    ++           +  + V GT 
Sbjct: 68  GAGTVIISTAIRRDNPEVQAARAAGIPVVRRANMLAEITRL---------KYTVCVAGTH 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +   +G+    I     I ++  + +      + +    S         
Sbjct: 119 GKTTTTSLVACLLDGAGIDPTVI-NGGIIHAYGSNYKAGESDWMVVESDESD-------- 169

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +       TN+  +H+D++ T      A    F E LP    A
Sbjct: 170 ------------GTFAKLHPTCAIVTNIDPEHMDHYGTMDKLREA-FDTFVENLPFYGFA 216

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK-KVCAIHNKQQVTISVEGKDFDFL 303
           ++  D    + +  R  +          Q     +            V I     +    
Sbjct: 217 VLCTDHPEVQALAARVTDRRRITYGFNLQADVRAVNLSTDLKGAHFDVEIRRGAGEAPRR 276

Query: 304 F-----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---- 354
                 P+ GE  V NAL A  + + +G     +   L     V  RF  VG        
Sbjct: 277 IEGLTLPMAGEHNVQNALAAITVALELGASDEQISASLASFGGVKRRFTPVGEWLPAAGG 336

Query: 355 -GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLAD 411
              +I  DY H    +  +LK  R + + R ++         + K       +   D AD
Sbjct: 337 EPVKIIDDYGHHPVEIAAVLKAARAMQADRTVIAVCQPHRYSRLKDLFEDFSR-CFDQAD 395

Query: 412 IAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +V       E P      E +   I  +G        +  E       +     ++V 
Sbjct: 396 HVLVAPVYEAGETPIPGITHETLVRSIQRNGHRSARALPSLAELPEVVKTLAGPGAMVVC 455

Query: 465 AGKG 468
            G G
Sbjct: 456 LGAG 459


>gi|90410769|ref|ZP_01218784.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Photobacterium profundum 3TCK]
 gi|90328400|gb|EAS44698.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Photobacterium profundum 3TCK]
          Length = 421

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 106/386 (27%), Gaps = 32/386 (8%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +  ++       K  E ++ V GT+GK S  + ++ I   +G           I    + 
Sbjct: 34  RAFAVAQKEQLIKPAERVITVAGTNGKGSTCAILEAILIDAGYKVGVYSSPHLIRYNERV 93

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                     L  +    +   +     + S    +   L  + L      ++    +  
Sbjct: 94  RINGQ----ELDDSYHSAAFAHIEQARGDISLSLFEFGTLAALHLFKQQRVDVVILEVGL 149

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-- 277
                A       +               DD       K       +    G        
Sbjct: 150 GGRLDATNIVDHDVSVITSLAVDHVDWLGDDIEIIGFEKAGIFRSEKPAICGQPNPPASV 209

Query: 278 --HLKKVCAIHNKQQVTISVEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAI 325
             H   + A   +     S E +   + +            P       A     L  A 
Sbjct: 210 PAHADDIGAELYQVGYQFSYEQQGDTWSWNCGAFDLTDLPIPALPLPNAATALMALGTAD 269

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--- 382
              S   +        +PGR E V   +    + +D AH  +S E     +  +      
Sbjct: 270 LEISDENIAAGLAKVSLPGRMERV---NESPLVLMDVAHNPHSAEYFSSQLTQLKIRENK 326

Query: 383 -RIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
            RI  V     D+D       M  I       ++   + PR+   ++I + +   + GF 
Sbjct: 327 TRIHAVVAMLHDKDIAATIDEMKGIVDTWYPASL---EGPRAAKADEILSHLSVDVAGF- 382

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +   A   A+      DV++V G
Sbjct: 383 --ASPELAFDAALTQAAPDDVVIVFG 406


>gi|330443875|ref|YP_004376861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
 gi|328806985|gb|AEB41158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
          Length = 419

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 114/395 (28%), Gaps = 72/395 (18%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           VV S       +  I + +  + V+ + +  L     +         + VTG++GK++  
Sbjct: 62  VVRSPGIPPTHAWVIEAKSRGISVETDIQVAL-----KSPEFQQYPSIGVTGSNGKTTTV 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           SF+  +    GLS+  +G   T               + L                VE S
Sbjct: 117 SFLTHLFHTLGLSAVSMGNIGTP-------------ILELQGVS--------GIRVVEIS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L           + +  N+ ++H+DYH T  AY  AK                Y  D
Sbjct: 156 SFQLVDQEERIPVFSSAALLNVCQNHLDYHDTMDAYMMAKSH-----------IANYVQD 204

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +  V +                                   + E  D           
Sbjct: 205 PQTLWVGEGISLGKPYRAYFEE---------------------TQEILDKASALKPIYLH 243

Query: 311 QVYNALVAAGLCIA-IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              N   A  L      +     L  ++     P R E++G            A T  ++
Sbjct: 244 DRSNYCAAYALAKEVCHVPLEGFLLAIQTFKKPPHRIEYLGKKHNVHYYNDSKATTVEAV 303

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  L  +     G  ++V   G ++       +  +    A   I        E  E+I 
Sbjct: 304 KQALIAL-----GSKVIVILGGRNKGGDF-SALSFVLSQTAKHVI-----AMGECREEIV 352

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  G+          EAI  A  + +  D +++
Sbjct: 353 QAV-AGVVPVCMAHKLEEAIEIAQALASAGDSILL 386


>gi|163732135|ref|ZP_02139581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
 gi|161394433|gb|EDQ18756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
          Length = 464

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 125/404 (30%), Gaps = 61/404 (15%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTGTSGKSSVASFVQ 134
           Y   +    +     + V ++   F   FA+  +        ++AVTG++GKS+ ++ + 
Sbjct: 80  YPAPNPVVRLALQAGVPVDNDIGLFFQSFATEDWSNFDIAPRVVAVTGSNGKSTTSALIH 139

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I +  G  +   G                   + L                   SS+  
Sbjct: 140 HILEHVGRPATLAGNIGRGVLDIDPPHDGEVVVLEL-------------------SSYQT 180

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---- 250
           D  R   +      FTNL  DH+D H     YF AK RLF E  P  +   +  D+    
Sbjct: 181 DLAR--SLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAEGGPDRAIVGVDEDEGLSL 238

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A      +         ++    G    +       ++ +    +   D   +  LPG  
Sbjct: 239 AGQLAEGRADDRVIRISVAQKLTGPGWQVFARKGFLSEYRKGKQIASIDLRSVPGLPGVH 298

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA  A  +C ++G+   ++   L     +P R + VG       +       + + +
Sbjct: 299 NHQNACAAYAVCRSLGLAPKVIEAALHSFQGLPHRSQLVGEKDGVRFVND---SKATNAD 355

Query: 371 MILKNIRTITSGRIIVVF-----GCGGDRDQG----KRPIMGKIALDLADIAIVTDDNPR 421
              K +    S R I        G    RD      K  ++G+ A   A    V      
Sbjct: 356 AAAKALAAFPSIRWICGGLEKDGGMDALRDASASVVKAYVIGREAAAFAMKLPV------ 409

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                                    +A+  A       DV+++A
Sbjct: 410 ----------------EAEICTTMAQAVEKAAREAEAGDVVLLA 437


>gi|28572689|ref|NP_789469.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27]
 gi|28410821|emb|CAD67207.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei TW08/27]
          Length = 475

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 134/435 (30%), Gaps = 51/435 (11%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP---------E 115
             GA   V      L+     + S    +   N     +  A                 +
Sbjct: 57  QAGAIVKVGHDPAMLEGVDTFVYSGA--IDSSNPEYAYAERARINLLHRSLALKWITRGK 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++++ G+ GK+S  + +       G         S ++ F+ +  L       L    +
Sbjct: 115 RLISIAGSHGKTSTTAMIATALHVLGNKCGVA-NGSYMNFFSANALLGLND---LFVIEA 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S         + S                    N+  DH+DY+ +Q A   +     +
Sbjct: 171 DESDGSFLFYDTDIS-----------------VVNNISMDHVDYYGSQSALEGSFF---D 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKR------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             L     A+I  DDA   ++  +      +     RV++ G               N  
Sbjct: 211 FSLRSSDAAVISLDDAACIKIASKLLQSSGSRGPSKRVITFGKNRSADVCLYEMGCMNPA 270

Query: 290 QVTISVEGKDFDFLFPLPGEFQVY-NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + T+S EG+ ++  F          N   A  + + +G   +  LE +        R E 
Sbjct: 271 RFTVSYEGRFYNAGFKGLFGEHHAVNTCAALSVLLCLGYGISESLEAILSFSGTRRRLEL 330

Query: 349 VGTN--SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
              +    G +I+ DYAH    +   L  IR++   R+I +F      R          +
Sbjct: 331 HFDSGGKDGIKIFDDYAHHPREIRTALTAIRSVQHTRLIALFQPHLYSRTAALHREFASV 390

Query: 406 ALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             + AD  I+       E P      KI  +        +        +    + L   D
Sbjct: 391 LENCADFTIILPVYAARESPIPGVDAKIIFDAYRDKRNVVMLEGFDHTLSFFRQFLRDGD 450

Query: 461 VLVVAGKGHETVHIV 475
           +++  G G +   I+
Sbjct: 451 LVITLGCG-DVYKII 464


>gi|315107080|gb|EFT79056.1| Mur ligase family, glutamate ligase domain protein
           [Propionibacterium acnes HL030PA1]
          Length = 160

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 11/134 (8%)

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFG-CGGDRDQGKRP 400
            RF+ VG       ++ DYAH    L   L   R +    GR+I  F      R +    
Sbjct: 12  RRFQLVG-RVADVSVFDDYAHHPTELRATLGAARRVVTGQGRVIACFQPHLFSRTRDFAG 70

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             G  AL LAD  IV+D  P  EDP      E +   +I          ++ +      E
Sbjct: 71  EFGS-ALTLADRVIVSDIYPAREDPIPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAE 129

Query: 455 MLNKQDVLVVAGKG 468
            +   D+++  G G
Sbjct: 130 EVRPGDLVITLGAG 143


>gi|320161741|ref|YP_004174966.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
 gi|319995595|dbj|BAJ64366.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
          Length = 461

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 97/285 (34%), Gaps = 18/285 (6%)

Query: 195 DQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +  R+  G+       T L  DH D   T   Y  A      ++       ++   D   
Sbjct: 159 EYDRMFLGLHPHIAVITYLEHDHPDCFPTMADYSGAFEDFIRQIQAGG--ILLVNGDHPP 216

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--------FDFLFP 305
              + +A   G +V++ G      +  K  +++     +  V  +               
Sbjct: 217 TRALGQATPKGVKVMTYGESEHNTYFLKHASVNRWGGFSADVWKQMPDGENRRLLHLALQ 276

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG+  + NAL A  +   +G+  +   E L   H    RFE  G  + G  +  DYAH 
Sbjct: 277 VPGKHNLLNALAALAVADQLGLMLSPAAEALHLFHGTGRRFEVRG-EANGVTLIDDYAHH 335

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSE 423
              +   L   R     R I          + +  +M +       AD  +V +     E
Sbjct: 336 PTEIRTTLAAARARYPERHIWAVWQPHTYSRTQ-ALMEEFCQSFEDADAVVVLEIYAARE 394

Query: 424 -DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +P     E+++ +  P  + +     A    +  L   DV++V 
Sbjct: 395 KNPGFSAREVVNRMKHPAAVFQPTLETAQEYLLNCLQPGDVVLVL 439


>gi|316940202|gb|ADU74236.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 1313]
          Length = 466

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 114/360 (31%), Gaps = 37/360 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I AVTG+ GK++  + +  + +  G   +  G          +    T   +
Sbjct: 111 FFELCPAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPLLSKIEEIKDTDKVV 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L               TN+  +H+D H++ + Y +
Sbjct: 171 ------------------LELSSFQLH---TMTKSPNVAVVTNVSPNHLDVHKSMEEYVS 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F     ++   + + +D   +   +   +          +   +    +    + 
Sbjct: 210 AKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDG 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  T   +  D                 +AA   +   +D  ++ +       V  R E 
Sbjct: 270 ETETEIAKASDIV-----IPGVHNVENFLAATAAVIDCVDRDVIRKVATTFTGVEHRIEL 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +         A +       L + +       +++   G D+      +   IA  
Sbjct: 325 VREINGVKFYNDSIASSPTRTIAGLNSFKD-----KVILIAGGYDKKIPYDALGPVIAEK 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  + ++    P+ E  + +R E      G      +  +  EA++ A    +  DV+++
Sbjct: 380 VKCLVLIGQTAPKIE--KALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVIL 437


>gi|238756426|ref|ZP_04617735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia ruckeri ATCC 29473]
 gi|238705356|gb|EEP97764.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia ruckeri ATCC 29473]
          Length = 459

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 106/364 (29%), Gaps = 44/364 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++AV GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVVAVAGTHGKTTTAGMVTWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               K   +       
Sbjct: 202 KQFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQEFVGDTGSWSAKKVTVDASAYQV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 FLDNELVGEVNWSLVGEHNMHNGLMAIAAARHVGVQPADACRALADFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL- 409
           + G  +Y D+AH   ++   L  +R    G  RI+ V        +     MG    +L 
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP-----RSNTMKMGLCKNELA 375

Query: 410 -----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQD 460
                AD   +         P+ I  ++       I+  +    I T +EM        D
Sbjct: 376 PSLGRADEVFLFQ-------PQHIPWQVAEVADACIQPASWNADIDTLVEMIVKTAQPGD 428

Query: 461 VLVV 464
            ++V
Sbjct: 429 HILV 432


>gi|269926713|ref|YP_003323336.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790373|gb|ACZ42514.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 474

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 113/361 (31%), Gaps = 35/361 (9%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTP 165
           +  +   P  I A+TG+ GKS+  S++  I +     +   G     + S        TP
Sbjct: 111 NLFWRYCPAPITAITGSKGKSTTTSWLGHISKLWRPDTVVAGNLRVSALSMLPQISEDTP 170

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             + L                   SS  L+   + G        TN+  DH++ + + +A
Sbjct: 171 VILEL-------------------SSWQLEAFEVGGEAPHVSCITNISYDHLNRYPSFEA 211

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y+N+K  ++         A+   DD      ++             +     ++      
Sbjct: 212 YYNSKRWIYRN-QKTTDYAVFNYDDPIVSRFVEDCLAQVRWFSRSSHVKPGGYIDNDYIY 270

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                 T S           LPGE    NAL AA L  A+ I    ++E L     +P R
Sbjct: 271 LV--DETGSTRKLLQVHELQLPGEHNRMNALAAAVLASAMNIPDEFIVEGLRTFKGLPDR 328

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E V        I    +    S    LK +        +V+   G  ++     +   I
Sbjct: 329 LELVSVIDGVKYINDTTSTVPASTIAALKAVEG-----EVVLLAGGASKNVPFDELADFI 383

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRIEAIRTAIEMLNKQDVLV 463
                 + ++            ++  I    P  I     +   A+  A  +      ++
Sbjct: 384 CQKKVRVVLL-----EGSATADLQTAINKRCPELIVGTFSSLESALEAARSVARPGHTVL 438

Query: 464 V 464
           +
Sbjct: 439 L 439


>gi|225021675|ref|ZP_03710867.1| hypothetical protein CORMATOL_01703 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945666|gb|EEG26875.1| hypothetical protein CORMATOL_01703 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 494

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 17/134 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V +      +++D AH  +    + + + R     R++ V    GD+D      
Sbjct: 351 PGRLERVRSAPT---VFLDAAHNPHGARALAQALERDFDFTRLVGVVSVLGDKDV---RG 404

Query: 402 MGKIALDLADIAIVT-DDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + +         +VT + +PR   +E+   I  EI  G        +   A+  A+E+  
Sbjct: 405 ILRELEPCLHELVVTQNTSPRVLPAEELADIAREIF-GEERVHVAQDLPGAVELAVELAE 463

Query: 458 KQDV-----LVVAG 466
             +V     +++ G
Sbjct: 464 DTEVQSGAGVIITG 477


>gi|94265518|ref|ZP_01289266.1| Folylpolyglutamate synthetase [delta proteobacterium MLMS-1]
 gi|93453959|gb|EAT04305.1| Folylpolyglutamate synthetase [delta proteobacterium MLMS-1]
          Length = 438

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 342 VPGRFEF--VGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD-QG 397
            PGR E   +G  +   R+ +D AH    +  ++  ++   +  R++VV+    D+D   
Sbjct: 294 WPGRLELLKMGPPADERRVLLDGAHNPAGVAELVAALQGDFSYRRLVVVWAGMADKDLAA 353

Query: 398 KRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEM 455
              +M  IA     + I T  D  RS   E++R  +        +     +EA+  A   
Sbjct: 354 GLALMAPIAS----VFIFTRPDAERSATAEELRELLPPEQRRQALVAAGVVEALELACRQ 409

Query: 456 LNKQDVLVVAG 466
               D++VVAG
Sbjct: 410 SGTDDLVVVAG 420


>gi|325104645|ref|YP_004274299.1| FolC bifunctional protein [Pedobacter saltans DSM 12145]
 gi|324973493|gb|ADY52477.1| FolC bifunctional protein [Pedobacter saltans DSM 12145]
          Length = 426

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 3/121 (2%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                T  +   +  D  H  + ++ +LKNI      ++ +V G   D+D  K   + ++
Sbjct: 300 MGRWQTLQKNPLVICDTGHNEDGIKEVLKNIAITPHKQLHMVLGMVKDKDISK---VLQL 356

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               A       D  R+++P ++ AE            +  +A+ TA       D++ V 
Sbjct: 357 LPKQAIYYFCAPDFERAKNPSELAAEAAIYGLEGNHYDSIQKALETAKNNAKPDDLVFVG 416

Query: 466 G 466
           G
Sbjct: 417 G 417


>gi|253988935|ref|YP_003040291.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780385|emb|CAQ83546.1| Folylpolyglutamate synthase-folc bifunctional protein [Photorhabdus
           asymbiotica]
          Length = 432

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/381 (13%), Positives = 105/381 (27%), Gaps = 41/381 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ V+GT+GK +    ++ +   +GL          +    +           L 
Sbjct: 47  NPAPRVITVSGTNGKGTTCCTIESVLLAAGLRVGVYSSPHLVRYTERVRIQGK----ELP 102

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +         +     E S    +   L  ++L   +  ++    +       A      
Sbjct: 103 EQEFCRVFADIESRRGEISLTYFEYGTLAALQLFKEACLDVVILEVGLGGRLDATNIVDA 162

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV------CAI 285
            +                D       K       R   VG       + +V         
Sbjct: 163 DIAAITSIALDHIDWLGADREHIGYEKAGIFRKDRFAVVGEPDMPSSIAEVADELGAKLF 222

Query: 286 HNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGID-----SA 330
                   S   + + +            P         A+      +          + 
Sbjct: 223 RCGTDWCFSQREESWYWQSDDILLSNLPLPNVPLMNAATAMGVICCLLRQDDKVSQAINE 282

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVV 387
             +    K   +PGRF+ V  +     + +D AH  ++   +++ +  +      RI+ V
Sbjct: 283 QAIHQGLKNAQLPGRFQIVRESPL---LILDVAHNPHAAAYLVQKLTLLPRQPDSRILGV 339

Query: 388 FGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            G  GD+D       G +A      D        P +E       E+   +       + 
Sbjct: 340 VGMLGDKDIA-----GTLACLSQQIDKWYCA---PLTEFRGADAQELAQHLEQPQVFTDV 391

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A   A+   ++QD++VV G
Sbjct: 392 ERAWYQAMADADEQDIVVVCG 412


>gi|209525717|ref|ZP_03274254.1| UDP-N-acetylmuramate/alanine ligase [Arthrospira maxima CS-328]
 gi|209493886|gb|EDZ94204.1| UDP-N-acetylmuramate/alanine ligase [Arthrospira maxima CS-328]
          Length = 528

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 65/431 (15%), Positives = 133/431 (30%), Gaps = 71/431 (16%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A      ++        PI    +    L   A           +AV GT GK++
Sbjct: 111 VICSTAIHPENPEYQVARELGCPIFHRSDLLAAL--MAEY-------QSIAVAGTHGKTT 161

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +  ++GL                      P+ +   +  ++  +  V H    
Sbjct: 162 TSSLIAFLLLKAGLD---------------------PTILVGGEVNAWEGNARVGHSPYL 200

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D+++T     +       +            
Sbjct: 201 VAEADESDGSLVKLASHIGVVTNIELDHPDHYKTLDQLISTFRIFANQCETIVGCI---- 256

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  V           ++  +   +                             L G
Sbjct: 257 ---DCTMVRDYLKPTISYSINSQFNADYTVDAVQYLADGIMAQVYERGEAIGLLKLQLLG 313

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL    +   + ++ +++ + + +      RFE+ G N  G +   DYAH  + 
Sbjct: 314 AHNLSNALATVAVGRLLNLEFSVIAQAIAQFPGTKRRFEYRG-NYGGIQFVDDYAHHPSE 372

Query: 369 LEMILKNIR-------------------TITSGRII--VVFGCGGDRDQGKRPIMGKIAL 407
           + + L   R                    +  G  I  VV      R      +M   AL
Sbjct: 373 IRVTLAAARGRLQNSSGLSSTLSEAAITPVHPGSEIKRVVAIFQPHRYSRTETLMEDFAL 432

Query: 408 DL--ADIAIVTDDNPRSE-DPEKIRAE-----IIHGIPGFIEKGNRIEAIR-TAIEMLNK 458
               AD+ ++T+     E +P +I  +     +    P    + +  EA++    ++L  
Sbjct: 433 CFGDADLVMLTEIYSAGEANPGRISGQQLATRVAEHHPHVDYQSSL-EAVKTRLCQLLKP 491

Query: 459 QDVLVVAGKGH 469
            D+++  G G+
Sbjct: 492 GDLVLFLGAGN 502


>gi|328957125|ref|YP_004374511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
 gi|328673449|gb|AEB29495.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
          Length = 470

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 101/279 (36%), Gaps = 22/279 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +  ++      TN+   H+DYH T++ Y  AKM + +    ++   + 
Sbjct: 177 MELSSFQL--MGITELRPHIAVITNIYSAHLDYHGTREEYVAAKMSITKNQTEEDYLIVN 234

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           + D    +E+ +++                ++L+     +         E         +
Sbjct: 235 W-DQPELRELSQQSKATIVPFSRKEILETGVYLQDDVIYYQG-------EPVMAKETILI 286

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NA+ A  +   +  ++ ++   LE+   V  R +FV   +         A  +
Sbjct: 287 PGDHNVENAMAAIAVAKLLNQENGVIRTSLEQFTGVKHRTQFVREWNERRFYNDSKATNT 346

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + E     ++       I++   G DR      ++  +        IV       E   
Sbjct: 347 LATEN---ALKGFDV--PIILLAGGLDRGNNFDELIP-VMNKKVKALIV-----FGETAM 395

Query: 427 KIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+       GIP  I   N   A+  A E+    DV+++
Sbjct: 396 KLSETGTEAGIPTIISVQNVEAAVPVAYELSEPNDVILL 434


>gi|163816720|ref|ZP_02208083.1| hypothetical protein COPEUT_02910 [Coprococcus eutactus ATCC 27759]
 gi|158447977|gb|EDP24972.1| hypothetical protein COPEUT_02910 [Coprococcus eutactus ATCC 27759]
          Length = 468

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 119/415 (28%), Gaps = 44/415 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+V+      D+   I      +  +N    L    +    +     + V GT+GK S  
Sbjct: 23  IIVADYRETVDYILGIPLFAQKIGKENLSSLLCRLGN---PEKSIPAVHVAGTNGKGSTC 79

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---------------------TPSPIY 169
             + Q+    G           +S   +                           PS   
Sbjct: 80  RALAQMLTGMGYRVGLFISPHLVSINERIQIDGENISDADFVWAFETVKEKFTQHPSFFE 139

Query: 170 LAKALSYLSSQGVTHVSVEASS-HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
           +  A++ +  +      V   +  G      + +       T++G DH++Y         
Sbjct: 140 VMFAMAAVYFREKKCDFVVYETGMGGRLDATNVLMPELSIITSVGMDHMEYLGDTIEKIA 199

Query: 229 AKMRLFEELLPKESP-----AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           A+     +            A+    +  ++           +   + + G       + 
Sbjct: 200 AEKAGIIKPGIPIIYFKRDEAVAKVIEDTARGQKSPVIMVEKQDYIINHLGDKTIDFSLH 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           + +      +  +   +            Y  + A     A   D    +          
Sbjct: 260 SRYYSYCNLVIQKTSLYQLENISLAVMAFYGLMKA---RNASEEDIEKGIRETLPEFYWE 316

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIM 402
           GR E +        IYVD AH   ++   +  +RT     R I+VF    D++ G    M
Sbjct: 317 GRMEEIAP-----HIYVDGAHNVEAIRAYIDTMRTLHRDDRKILVFAAVRDKEYGAMISM 371

Query: 403 GKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               L   D  IVT  D+ R  D  K  A+I           +    I  A++M 
Sbjct: 372 LASQLKW-DRIIVTSVDSSRKADSGK-LAQIFADNTDVPVLVSDE--IDEAMDMA 422


>gi|300899372|ref|ZP_07117631.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 198-1]
 gi|300357032|gb|EFJ72902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 198-1]
          Length = 445

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 149 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|297194887|ref|ZP_06912285.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152508|gb|EFH31801.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 83

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            D ++VAGKGHE    +  G  +   D  ++R  + 
Sbjct: 36  GDTVLVAGKGHEQGQDIA-GVVRAFDDRQVLRAAIE 70


>gi|229135302|ref|ZP_04264097.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST196]
 gi|228648171|gb|EEL04211.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST196]
          Length = 433

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 91/309 (29%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAIYYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGD 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           ++V K  H +   +            K 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVKNEEALQVIQKVAKENHASLYELGKQFTILHKHSNKD 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                           +         G   +    V         + +   ++   +   
Sbjct: 239 GEHFDFDCPFASFENVRISMKGIHQVGNAALALMAVMYLKTYLSFLINEEEIKVGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKKKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   +  EAI T ++M+ 
Sbjct: 354 -MVGQLEKVADEIIFTT----FAFDRAISADKLASYSQQESKLVFEDWKEAIDTKVDMIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 EHDVFIITG 417


>gi|220912899|ref|YP_002488208.1| FolC bifunctional protein [Arthrobacter chlorophenolicus A6]
 gi|219859777|gb|ACL40119.1| FolC bifunctional protein [Arthrobacter chlorophenolicus A6]
          Length = 452

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRD-----Q 396
           PGR E V +      I VD AH  + ++     ++   T  R++ V G   ++D     +
Sbjct: 305 PGRLEVVRSAPT---IIVDAAHNPDGIKASAAALKEAFTFSRLVPVVGVLKEKDAEEILR 361

Query: 397 GKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRA---EIIHGIPGFIEKGNRIEAIRTA 452
             +  +G +A +       T  N PR+    ++     ++  G      +    +A+  A
Sbjct: 362 ELKESLGDVAEEYC----FTQSNSPRAVPAAELAELAIDLGFGEDNVHIEEKLDDALEWA 417

Query: 453 IEMLNKQD----VLVVAG 466
           +E     D     ++V G
Sbjct: 418 VERAEANDDLSGGVLVTG 435


>gi|319776620|ref|YP_004139108.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
 gi|317451211|emb|CBY87444.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
          Length = 475

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 118/377 (31%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA    +    A+ +   P++      + L+      +G  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN+  DH+D ++       A    
Sbjct: 173 EADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +                 I   +           I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFI 334

Query: 354 RGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           R     R+  DY H    + + +K  R     + IV+        + +       ++   
Sbjct: 335 RPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 409 LADIAIVTDDNPRSEDP 425
             D  I+ D     E P
Sbjct: 395 -VDALIMLDVYAAGESP 410


>gi|295135636|ref|YP_003586312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
           profunda SM-A87]
 gi|294983651|gb|ADF54116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
           profunda SM-A87]
          Length = 445

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 119/363 (32%), Gaps = 41/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA++        I+ +TG++GK++       I +  GL     G               
Sbjct: 95  EFAAQYT---SAVIVGITGSNGKTTTTKLTHHILKDGGLQVGMAGNVGDS---------- 141

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        ++     +  +E SS  LD   ++  +      TN+  DH+D ++ +
Sbjct: 142 ---------FAKQVAETNAGYYVLELSSFQLD--GIEKFRPHIAVLTNITPDHLDRYEYK 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK--RAHNAGCRVLSVGYQGKFIHLKK 281
              +        +   K+   I  ADD      +K  +                  +L+ 
Sbjct: 191 FENYIEAKFRITKNQTKDDYFIYDADDEVITNWLKTNKIEAQLLPFSLERKLENGAYLEN 250

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              I   +   +++   D              NA+ AA +   + I    + E +E    
Sbjct: 251 DTIIIKTENTELTMATSDLTLQGKH----NTKNAMAAATVAKLLKIRKNTIRESMESFQG 306

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E V   +    I    A   N+    L++      G+ + + G   D+      +
Sbjct: 307 VEHRLEKVLKINNVQYINDSKATNVNATYYALES----MEGQTVWILGGV-DKGNVYDEL 361

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +   +  I  +  DN       KI     + +   IE  +  EA++ A  +  K D 
Sbjct: 362 LPLVNEKVKAIICLGVDNT------KIMNSFGNCVETLIETQSMSEAVKMAYRLSEKGDT 415

Query: 462 LVV 464
           +++
Sbjct: 416 VLL 418


>gi|38234356|ref|NP_940123.1| Mur ligase family protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38200619|emb|CAE50315.1| Mur ligase family protein [Corynebacterium diphtheriae]
          Length = 498

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T      +++D AH  +    + K + R     R+I V    GD+D     +
Sbjct: 355 PGRLERVRTAPT---VFIDAAHNPHGAAALGKALERDFDFSRLIGVVAVLGDKDYVG--V 409

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEML--- 456
           +  +   L++I + T+ +PR+   + +  E  +  G        +   A+  A+E+    
Sbjct: 410 LRALEPHLSEIVVTTNSSPRALAADDLAEEARNVFGEERVHVAYSLPSAVELAVELAEDT 469

Query: 457 --NKQDVLVVAG 466
                  ++V G
Sbjct: 470 EVQSGSGVIVTG 481


>gi|315125604|ref|YP_004067607.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
 gi|315014117|gb|ADT67455.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
          Length = 469

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 147/456 (32%), Gaps = 62/456 (13%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD 96
           R I+AG  +F+   G+ E+    +  A       +VVSSA    +          I VV 
Sbjct: 44  RLIKAGAEVFI---GHHENN---VKDA-----NVVVVSSAIDKTNPEIQAAQAARIPVV- 91

Query: 97  NTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTI 153
             R+   L+      +G      +A+ GT GK++  S +  I  ++G   +F IG     
Sbjct: 92  --RRAEMLAELMRFRHG------IAIAGTHGKTTTTSLIASIYAQAGLDPTFIIGGLLNS 143

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
           +        +        ++ +                          ++ +    TN+ 
Sbjct: 144 AGSNAKVGKSDFLIAEADESDASFLH----------------------LQPMVSVITNIE 181

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
            DH++ +             F   LP    A++  D   + E++ R              
Sbjct: 182 EDHMETYGGSLEKMKDTYVEFIHNLPFYGLAVVCIDSDVAAELIPRFGRPVITYGESHEA 241

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              +      A   +  VT + +G+       +PG+    NA  A  +     I +  +L
Sbjct: 242 DYRMSDFSQTANTCQFTVT-NKQGESLTAKLNMPGKHNALNATAAIAVAKDQNIANHAIL 300

Query: 334 EHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             L+    +  RF+  G          +  DY H  + +   +   R     + +V+   
Sbjct: 301 AALDTFEGIGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGWPDKRLVMVYQ 360

Query: 391 GG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIE 441
                R +       K+  D  D  ++ D     E+P      + +   +   G      
Sbjct: 361 PHRYTRTRDLYEDFVKVLAD-VDQLLLLDVYSAGEEPIVGADSKSLCRSLRQRGKEPLHV 419

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
             +   A   A   L   D+++  G G+    +V N
Sbjct: 420 ASSSELAGVLA-NCLQNNDLVLTQGAGN-IGQLVKN 453


>gi|153216045|ref|ZP_01950250.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           1587]
 gi|153826205|ref|ZP_01978872.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MZO-2]
 gi|229512437|ref|ZP_04401910.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           TMA 21]
 gi|262190863|ref|ZP_06049082.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           CT 5369-93]
 gi|124114495|gb|EAY33315.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           1587]
 gi|149740065|gb|EDM54234.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MZO-2]
 gi|229350518|gb|EEO15465.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           TMA 21]
 gi|262033254|gb|EEY51773.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           CT 5369-93]
          Length = 421

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 103/365 (28%), Gaps = 16/365 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +           + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINGQDLADEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    +S+     G    L       + ++       GR             
Sbjct: 106 TQAFAHIEQERGDISLSLFEFGTLAALYLFEQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +         +   +   F         +     A  L        A+   ++       
Sbjct: 226 QFSYEKTSATTWNWRSGRFELTDLPIPSLPLPNAATALMALGCSGLAISDINIVDGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   S    I +D AH  +S   +++ +      R I +VFG   D+D      +
Sbjct: 286 QLAGRMQVISHQPTIVLDVAHNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD------I 339

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
                +L+           S       A++   +P    +  N + A   A+     QDV
Sbjct: 340 ASTVAELSPAVTHWYPASLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDV 399

Query: 462 LVVAG 466
           +VVAG
Sbjct: 400 IVVAG 404


>gi|78221631|ref|YP_383378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
 gi|122063247|sp|Q39YM1|MURD_GEOMG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78192886|gb|ABB30653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
          Length = 452

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 133/414 (32%), Gaps = 56/414 (13%)

Query: 52  NKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRL 109
           ++ D   F        A+ +VVS     +     A  R+   ++            ASR 
Sbjct: 59  DRHDEADFAA------ADVVVVSPGVPQESPYLQAARRAGREVI-------TEIELASRF 105

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++A+TGT+GK++  +   +I    G  +F  G          +   T    + 
Sbjct: 106 VTVP---MVAITGTNGKTTTTTLTGEIFSACGFRTFVGGNIGNPLIELVEGGETVERVV- 161

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                            VE SS  L+   +   +       N+  DH+D + T Q Y +A
Sbjct: 162 -----------------VEISSFQLEW--ISSFRPRVAVLLNITEDHLDRYATFQEYIDA 202

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K+R+FE        A++  DD     +  R       +       + +  +        Q
Sbjct: 203 KVRIFEN-QESTDYAVLNVDDPIVAGIAGRVAATVFPMSQQRELAEGVFHRDGVITFRHQ 261

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                     F     + G   + N + +    + +G D+   L  +E    +P R E V
Sbjct: 262 GREERFPTARF----RITGVHNIENIMASLAATLLLGCDAKQALAAVEGFGGLPHRMELV 317

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +         A    S+E  L +         I +   G D+     P+   +   +
Sbjct: 318 RELAGVRYYEDSKATNVGSVEKALASFND------ITLIAGGKDKGGSYAPLAPLVTERV 371

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             + ++       E  E++  E+   +          EA+  A  +     V++
Sbjct: 372 RHMVLI------GEAKERMARELGS-LTDTRMATTLEEAVELAASLTEPGGVVL 418


>gi|86147593|ref|ZP_01065903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
 gi|85834632|gb|EAQ52780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
          Length = 452

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 110/356 (30%), Gaps = 29/356 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             ++   + GC   +     +     K       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRIFSPKEDTAIQDVLSRGCWSETESSGEQGDWDAKKLVKDGSQFG 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  V NAL+A      +G+   L  E L K      R EF G 
Sbjct: 261 VYFQGECVGTVDWNLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  + + +II V         +G        +L  
Sbjct: 320 EVAGVSVYDDFAHHPTAIELTLSGLRNKVDTKKIIAVLEPRSATMKRGVHKETLADSLKQ 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
           AD   +   +    + +    ++           + ++A +   +      D ++V
Sbjct: 380 ADSTYLFQPD----NIDWSVQDVADACHQPAHVSDNMDAFVAKIVSEAQAGDQILV 431


>gi|284031635|ref|YP_003381566.1| Mur ligase middle domain-containing protein [Kribbella flavida DSM
           17836]
 gi|283810928|gb|ADB32767.1| Mur ligase middle domain protein [Kribbella flavida DSM 17836]
          Length = 563

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGK 398
             PGR      + R   + +D AH    LE +L+ +  +    GR+++  G  GDR    
Sbjct: 398 NNPGRM--NMYSLRDFTVVIDLAHNEAGLEALLEIMNGVRRPGGRLLLALGSPGDRSDEM 455

Query: 399 RPIMGKIALDLADIAIV--TDDNPRSEDPEKIRAEIIH------GIPGFIEKGNRIEAIR 450
              MG I    AD  ++   D   R   P      +        G+         ++A +
Sbjct: 456 VSAMGAIGARGADRVVIGHKDTYLRGR-PSAELDAVFREGTSSVGVDDVPSYPTELDAAK 514

Query: 451 TAIEMLNKQDVLVV 464
             +      DV+ V
Sbjct: 515 ALVAEAGPGDVVAV 528


>gi|115314665|ref|YP_763388.1| tetrahydrofolylpolyglutamate synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502248|ref|YP_001428313.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|254369190|ref|ZP_04985202.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290954333|ref|ZP_06558954.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312241|ref|ZP_06803039.1| UDP-N-acetylmuramyl tripeptide synthase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|115129564|gb|ABI82751.1| possible tetrahydrofolylpolyglutamate synthase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156252851|gb|ABU61357.1| UDP-N-acetylmuramyl tripeptide synthase with glutame ligase domain
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157122140|gb|EDO66280.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 561

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 119/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKE------------VMKRAHNAGCRVLSVGYQGKF 276
           A+ +        +    I   D    +            V +       +          
Sbjct: 283 AEAKSIVFRALGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYAC 342

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I               + +   +         +  + NA++A  L   +GI   ++ + L
Sbjct: 343 IVEDGNFVWVEANSKKVILPVIEAPLTVRSFAKHNIENAMIAIALSFKLGISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   I     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIILKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|319410066|emb|CBY90400.1| FolC bifunctional protein [includes: folylpolyglutamate synthase
           (folylpoly-gamma-glutamate synthetase; FPGS;
           tetrahydrofolate synthase; tetrahydrofolylpolyglutamate
           synthase) and dihydrofolate synthase [Neisseria
           meningitidis WUE 2594]
          Length = 424

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 123/393 (31%), Gaps = 37/393 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +    
Sbjct: 28  SEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAVN 87

Query: 163 TTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
             P                   I L        +     +  +     L+     RLD +
Sbjct: 88  AEPVSDDTITASFERIETARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGRLDAV 147

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G    +    +D+          ++   +  + +     I   +     ++  A  
Sbjct: 148 NAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPASLVAHAEA 206

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G ++L V  +    H  +    + + +   S          P P     Y    AA   
Sbjct: 207 IGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDNPARNRNALPFPALRGTYQLSNAACTL 265

Query: 323 IAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +   +  +   +        L   PGRF+ +          +D  H  ++   + +++
Sbjct: 266 TVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRRSL 322

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
             +    +   VF    D+D      + +I  D  D   +   D PR    E ++ ++  
Sbjct: 323 INLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHE 379

Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I          EA R A     + D +VV G
Sbjct: 380 HSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|259418779|ref|ZP_05742696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
 gi|259345001|gb|EEW56855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
          Length = 472

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 128/419 (30%), Gaps = 58/419 (13%)

Query: 65  AQGA----EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH--P 114
            QGA     A++VS      Y   +       +  + V ++   F    A+  + +   P
Sbjct: 60  KQGAFEGISALIVSPGIPHLYPKPNPVVRAALSAGVPVDNDIGLFFRSVATSEWDEFDTP 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AVTG++GKS+  + +  I +  G +S   G                   + L    
Sbjct: 120 PKVIAVTGSNGKSTTVALLHHILEHVGRNSQMAGNIGRGVLDIDPPVDGGVVVLEL---- 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          SS+  D  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 176 ---------------SSYQTDLAR--ALTPDVAVFTNLTPDHLDRHAGMGGYFAAKRRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E  P  +       D      +    + G     V        L          +    
Sbjct: 219 AEGGPDRAVI---GIDEDEGLFLAGQMSEGNGDDRVIRVSSGQKLSGSAGWSVFARKGFL 275

Query: 295 VEGKDFDFLFPL--------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            E +       +        PG     NA  A      +G+   ++   ++    +P R 
Sbjct: 276 SEYRKGRQAGSIDLRDIPGLPGAHNHQNACAAYAAARTLGLAPRVIEAAMKTYPGLPHRS 335

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           + V   +    +    A   +S    L   + I   R I     G +++ G   + G   
Sbjct: 336 QRVAQANGVSYVNDSKATNVDSAAKALSAFKKI---RWIC---GGLEKEGGLEALKGATG 389

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             L    I         +  +   ++               A+  A+    + + +++A
Sbjct: 390 EVLKAYVI-------GREAAQFAMQLNV---DAEVCTTMAAAVECAMADAGEGETVLLA 438


>gi|313893085|ref|ZP_07826662.1| bifunctional protein FolC [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442438|gb|EFR60853.1| bifunctional protein FolC [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 435

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 6/156 (3%)

Query: 314 NALVAAGLCIAIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            AL+A  L +          +          GRFE             D AH +   E  
Sbjct: 265 CALMAVRLLMQDDKSISEETMREGFARTTWAGRFEVKRGL--DRTFIFDGAHNAAGAESF 322

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
                 +       +      +D+ +  I+ ++      + +V     R+E PE +   I
Sbjct: 323 GMTYAELFKDTPKTIVMAI-LKDKNQEAIIREVVKAGDTVLVVPAPTDRTEVPEALVEVI 381

Query: 433 IHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +P        +  +A+  A +     D++ V G
Sbjct: 382 RRTVPKATAQTADSVEDALALAYKHTKTGDIIAVCG 417


>gi|258593041|emb|CBE69352.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [NC10 bacterium 'Dutch sediment']
          Length = 568

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 116/379 (30%), Gaps = 37/379 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+F +  A+    ++P  ++ +TG+ GK++       +                      
Sbjct: 200 RRFYAQ-ATARMRRYPGEVIGITGSYGKTTTKFITAALLHGRYPV-----------FKTP 247

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR-LDGIKLIAGSFTNLGRDHI 217
           D   TT   + +   +            VE +++G  + R +  +               
Sbjct: 248 DGVNTTMGIVRV---VREGLRDDHRFFVVEVAAYGPGEIREVCEVLRPRIGILTAVGVQH 304

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                             + LP +  AI+ ADD     + +RA   G RVL  G      
Sbjct: 305 LERFGTPERIAEAKYELIDSLPPDGLAIVNADDPVCLRLAERARQEGRRVLLYGIGEDER 364

Query: 278 HL----KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
            L    K V          +        F   L G + + N L A    +  G+    + 
Sbjct: 365 ALGVRGKDVTLSSKGSAFRVETGHGAAMFETRLLGGWNIGNILGATAAALECGVPLEEIA 424

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYA-HTSNSLEMILKNIRTITSGRIIVV---FG 389
             +  L   P R E       G    +D A       +M L+ +     G  I++     
Sbjct: 425 AGVRALAPAPKRLEIR--EEGGVIKLIDVANANPRGAQMALEVLSQFEGGSKILITPGLV 482

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-----IPGFIEKGN 444
             G  +  +   +G+ A  + D  ++          E +R     G          E  +
Sbjct: 483 ELGQIEAEENRRLGRAAAAVCDYVVLVGPQQTQPLQEGLREAGFSGSRVLIARHADEVAD 542

Query: 445 RIEAIRTAIEMLNKQDVLV 463
            ++AI      + + DVL+
Sbjct: 543 CLKAI------VCEGDVLL 555


>gi|257095425|ref|YP_003169066.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257047949|gb|ACV37137.1| cyanophycin synthetase [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 860

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 131/393 (33%), Gaps = 36/393 (9%)

Query: 103 SLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           ++ AS         I  +AV GT+GK++    +  I    GL     G T+T   + +  
Sbjct: 456 AIIASMFADGDDARIPLVAVAGTNGKTTTVRLIASILGEQGLRV---GMTTTDGVYVEGR 512

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL---GRDHI 217
           R+ T        A + L   GV    +E +  G+ +  L   +      TN+       +
Sbjct: 513 RIDTGDCSGPKSARNVLLHPGVDAAVLETARGGVLREGLGFDRCDVAVVTNIGLGDHLGL 572

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
            Y  T +     K  + + + P    A++ A D     +                     
Sbjct: 573 SYISTVEDLSVVKRVIVQNVTPVSGVAVLNAADPMVARMADSCPGTVTFFACDRNHPLMA 632

Query: 278 HLKKVCAIHNKQQVTISVEGK----------DFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             +        +     V                        FQV NA+ A     A+G+
Sbjct: 633 MHRAQRKRVVYRDGDALVASGGGVEHRLALAAIPVTQKGAIGFQVENAMAAVAAAWALGV 692

Query: 328 DSALVLEHLEKLHVV----PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG- 382
           D A +   L          PGRF     + RG  +  DY H  ++++ ++  +  + SG 
Sbjct: 693 DWATIRSGLASFVNDAQTAPGRFNV--FSYRGATLIADYGHNPDAIQALVNAVDNLPSGP 750

Query: 383 --RIIVVFGCGGDR-DQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPG 438
             +  VV    GDR D+  R    +I     D  ++  D   R     ++ A +  G+  
Sbjct: 751 GSKRSVVISGAGDRRDEDIRRQ-TEILGSAFDRVVLYQDQCQRGRADGEVLALLQQGLQS 809

Query: 439 FIEKGNRIE------AIRTAIEMLNKQDVLVVA 465
                   E      AI TA+  L   D+ ++ 
Sbjct: 810 ARRASEIQEIHGEFLAIDTALAELQAGDLCLIL 842


>gi|293407957|ref|ZP_06651797.1| ligase [Escherichia coli B354]
 gi|301024464|ref|ZP_07188143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 69-1]
 gi|291472208|gb|EFF14690.1| ligase [Escherichia coli B354]
 gi|300396577|gb|EFJ80115.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 69-1]
 gi|332748971|gb|EGJ79394.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-671]
 gi|332749250|gb|EGJ79671.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 4343-70]
          Length = 445

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 149 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|330721430|gb|EGG99489.1| Dihydrofolate synthase / Folylpolyglutamate synthase [gamma
           proteobacterium IMCC2047]
          Length = 431

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 118/393 (30%), Gaps = 34/393 (8%)

Query: 102 LSLFA--SRLYGKHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           L+  A  SR        + ++ V GT+GK S    +  I   +G           +    
Sbjct: 29  LARIAQVSRQMKLPSIAKKVITVAGTNGKGSTVCMLYSILAAAGYKVGTYTSPHLVHYNE 88

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--------------------H 197
           +      P    L              +S+     G                        
Sbjct: 89  RVRINGKPVSDELLCDAFERVDHAREDISLTYFEFGALTAFDIFSRADLDVAVLEVGLGG 148

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-AYSKEV 256
           RLD + LI      L    +D+                 +    +PA+    D   +   
Sbjct: 149 RLDAVNLIDPDIAVLTTIALDHTDWLGETREEIGTEKAGIFRAGAPAVCGEVDLPLTVIN 208

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
             ++  A        Y       + +  +            +      PLP    V  A 
Sbjct: 209 HAQSLAADLMRRGEVYDFSKHDDENISGMQVWDWNGTRAGERISLVNLPLPSLPLVNAAT 268

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
               L           +        +PGR++ +    +   I +D AH   +   + + +
Sbjct: 269 CLQALHQLDMDIPEQAIREGLINANLPGRYQRL---DKPVPILLDVAHNPEAASYLAERL 325

Query: 377 RTITS-GRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +     GR+  + G   D+D  +   IM  +  + A   +   D PR+   ++++A++  
Sbjct: 326 QEEKHTGRLYALLGMLSDKDTDEVLTIMHPVIDEWA---VCNLDTPRAIAADQLQAKLTE 382

Query: 435 -GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            G        N   A+   ++ +++ D+L++ G
Sbjct: 383 LGASRVETCANASAALEVLLDQVSEDDLLIIFG 415


>gi|281412225|ref|YP_003346304.1| FolC bifunctional protein [Thermotoga naphthophila RKU-10]
 gi|281373328|gb|ADA66890.1| FolC bifunctional protein [Thermotoga naphthophila RKU-10]
          Length = 435

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 114/388 (29%), Gaps = 41/388 (10%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------------- 151
            +           + V GT+GK SV + +  I    G                       
Sbjct: 35  LSKLGNPHLKYKTIHVGGTNGKGSVTNMISHILISQGYRVGSYYSPHLSTFRERIRLNEE 94

Query: 152 -------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-------ASSHGLDQH 197
                         +  L       +     +     +  +              GL   
Sbjct: 95  YISEEDVVKIYEKMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLG-G 153

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RLD   ++    + +     D+ +T              ++ +  P +       + +VM
Sbjct: 154 RLDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKEGVPLVTGERKREALKVM 213

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +         + V  +   + +K +    N+         +D       P + +     +
Sbjct: 214 EDVARKKNSRVYVIDKDFSVRVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVAL 273

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                  + +    + E L+    + GRFE +     G    +D AH  +  E ++++++
Sbjct: 274 KTLEATGLPLSEKAIREGLKNAKNL-GRFEIL--EKNGKTYILDGAHNPHGAESLVRSLK 330

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHG 435
                  + +V G   D++   R  + +    + +  IVT   +PR +D   +       
Sbjct: 331 LYFKDEPLNLVIGILDDKN---REDILRKYTGIFERVIVTRVPSPRMKDMNGLVDTAKKF 387

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                   + +EAI       ++ D +V
Sbjct: 388 FKNVEVIEDPLEAIE-----SSEGDTVV 410


>gi|168334047|ref|ZP_02692266.1| UDP-N-acetylmuramate--L-alanine ligase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 438

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 63/209 (30%), Gaps = 10/209 (4%)

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                     A               F     L G   V N L A  +C  + I  A + 
Sbjct: 226 DWSAQNISFDANACPSFDVYYKNEFVFHIAIALAGTHNVLNTLSAIAVCRFLDIPVAEIS 285

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L        RFE  G       +  DYAH  + ++  L  +       + VVF     
Sbjct: 286 KDLIHFSGAKRRFEMRG-KIHDILLIDDYAHHPSEIKATLNTVAKYPHKNLYVVF-QPHT 343

Query: 394 RDQGKRPIMGKI-ALDLADIAIVTDD------NPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
             + K  + G + AL      IVTD       NP       +   + +     I   +  
Sbjct: 344 YSRTKTFLNGFVDALSTYGQIIVTDIYAARETNPGDIHSRDLVKLLQNKGTNSIYIESFD 403

Query: 447 EAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
           E     +      D+++  G G+    I+
Sbjct: 404 EISDYLLTTTEPGDIIMTMGAGNVN-QII 431


>gi|61657365|emb|CAI44282.1| folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga
           naphthophila RKU-10]
          Length = 437

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/388 (13%), Positives = 114/388 (29%), Gaps = 41/388 (10%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------------- 151
            +           + V GT+GK SV + +  I    G                       
Sbjct: 37  LSKLGNPHLKYKTIHVGGTNGKGSVTNMISHILISQGYRVGSYYSPHLSTFRERIRLNEE 96

Query: 152 -------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE-------ASSHGLDQH 197
                         +  L       +     +     +  +              GL   
Sbjct: 97  YISEEDVVKIYEKMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLG-G 155

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RLD   ++    + +     D+ +T              ++ +  P +       + +VM
Sbjct: 156 RLDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKEGVPLVTGERKREALKVM 215

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           +         + V  +   + +K +    N+         +D       P + +     +
Sbjct: 216 EDVARKKNSRVYVIDKDFSVRVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVAL 275

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                  + +    + E L+    + GRFE +     G    +D AH  +  E ++++++
Sbjct: 276 KTLEATGLPLSEKAIREGLKNAKNL-GRFEIL--EKNGKTYILDGAHNPHGAESLVRSLK 332

Query: 378 TITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHG 435
                  + +V G   D++   R  + +    + +  IVT   +PR +D   +       
Sbjct: 333 LYFKDEPLNLVIGILDDKN---REDILRKYTGIFERVIVTRVPSPRMKDMNGLVDTAKKF 389

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                   + +EAI       ++ D +V
Sbjct: 390 FKNVEVIEDPLEAIE-----SSEGDTVV 412


>gi|56696080|ref|YP_166434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ruegeria
           pomeroyi DSS-3]
 gi|62900661|sp|Q5LU71|MURD_SILPO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56677817|gb|AAV94483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria pomeroyi
           DSS-3]
          Length = 466

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 128/423 (30%), Gaps = 57/423 (13%)

Query: 60  IPQAIAQGA----EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
           I     QG       ++VS      Y   +          + V ++   F   FA   + 
Sbjct: 55  IRDLRKQGVRDDTACLIVSPGIPHLYPAPNPVVAAALEAGVPVDNDIGLFFRSFAGPEWD 114

Query: 112 KHP--ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                  ++AVTG++GKS+ ++ +  I   +G      G         +     +   + 
Sbjct: 115 GFDTLPRVVAVTGSNGKSTTSALIHHILSEAGRPVQLAGNIGRGVLDIEPGEEGSVVVLE 174

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L                   SS+  D  R   +      FTNL  DH+D H     YF A
Sbjct: 175 L-------------------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAA 213

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           K RLF E  P  +       D      +    + G     V        L         +
Sbjct: 214 KRRLFAEGGPDRAVI---GVDESEGLYLAGQMSEGPGDDRVIRVSVSRKLTGPGWQVFAR 270

Query: 290 QVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
           +  +S   K       D   +  LPG     NA  A   C A+G+    +   +     +
Sbjct: 271 KGYLSEYRKGRQAGSIDLRDIRGLPGAHNHQNACAAYAACRALGLSPKAIEAGMRSYPGL 330

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R + V        +    A   ++    L   + I   R I     G  ++ G   + 
Sbjct: 331 PHRSQIVAEAGGVTYVNDSKATNVDAALKALGAFKRI---RWIC---GGLQKEGGIAALN 384

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           G +A  L    I         +      ++              EA+  A+      D +
Sbjct: 385 GGLAEVLKAYVI-------GREAAGFALQLEV---ESEVCTTMDEAVARAMAEAEPGDTV 434

Query: 463 VVA 465
           ++A
Sbjct: 435 LLA 437


>gi|297566092|ref|YP_003685064.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus silvanus DSM 9946]
 gi|296850541|gb|ADH63556.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus silvanus DSM 9946]
          Length = 463

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 89/276 (32%), Gaps = 11/276 (3%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             + L      NL  DH+     ++  ++      +E + + +              +  
Sbjct: 175 QHLALDVAVVMNLEPDHVGTPTERRPNYHPDFDSLKEAVRRFARNAQRVVYNAEWPGLDE 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 RV     QG            + +   +            +PG   V +AL A 
Sbjct: 235 LIQHPKRVSFGLEQGDCHTQNLHLLPMSSRFTVVWRGDPLGLVELGVPGLHNVVDALAAI 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            + +  G+  + + + L        RFE +G    G  +  DYAH    +  +L+  +  
Sbjct: 295 TVALLEGLPFSAIQKALAAFRGAHRRFELLG-EIHGAWVVDDYAHNPTKVRSVLEAAKG- 352

Query: 380 TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI 432
           T  R+  VF      R         + AL LAD A+V +     E P        I  ++
Sbjct: 353 TGRRVRAVFQPHRYLRTAQLWAEFAE-ALGLADEALVLEVYAAGEQPIPGVSGRMIADKL 411

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I         G   EA     + L   D+++  G G
Sbjct: 412 IAQGHNAQFLG-WSEARDYLEKNLKDGDLVLTIGAG 446


>gi|296139192|ref|YP_003646435.1| FolC bifunctional protein [Tsukamurella paurometabola DSM 20162]
 gi|296027326|gb|ADG78096.1| FolC bifunctional protein [Tsukamurella paurometabola DSM 20162]
          Length = 471

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T      +++D AH  +  + + + ++       +I V     D+D      
Sbjct: 324 PGRLERVRTAPT---VFIDAAHNPHGAQALARTVQSEFDFRTLIGVVSVFADKDA---VG 377

Query: 402 MGKIALDLADIAIVT-DDNPRS---EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML- 456
           +      + D  +VT + +PR+   E    I  EI  G    +     ++A+ TA+ +  
Sbjct: 378 ILTEIEPVLDTVVVTHNGSPRALEVERLAAIAEEIF-GEDRVVTAPTMVDAVETAVALAD 436

Query: 457 -NKQD-------VLVVAG 466
               D        +++ G
Sbjct: 437 QESDDEDPASGVGVLITG 454


>gi|88856510|ref|ZP_01131167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
 gi|88814164|gb|EAR24029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
          Length = 508

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 131/419 (31%), Gaps = 53/419 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLS---LFASRLYGKH--PENILAVTGT 123
           A + + A  +   S     + P+L     +   L      A RL  K   P   +A+TGT
Sbjct: 75  AALSAHAPDIVIVSPGYPQDHPLLEWSRKSHVALWTEIELAWRLRDKTGTPAEWIAITGT 134

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +GK++ A     I   +G  +  +G                     +    +     G  
Sbjct: 135 NGKTTTAQLAAHILSTAGFRAGAVGNIG------------------IPVLDAIRYPDGFD 176

Query: 184 HVSVEASSHGLD-QHR--LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            + VE SS  L    R  +  I  +A    N+  DH+D+H ++ AY NAK  ++      
Sbjct: 177 FLVVELSSFQLHGMPRTGVGAISPLASVCLNIADDHLDWHGSRAAYANAKATVYANTRIA 236

Query: 241 ESPAII------YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                         +DA   E  +             +      L       ++  V   
Sbjct: 237 AVYNRAVPSTLAMVEDADVIEGCRAIGFGLDTPGPSDFGIVSDLLADRAFGDDRHNVADE 296

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   D      L     + N L A+ L  A G+    +   +        R + V  +  
Sbjct: 297 LFTLDELRHNGLSAPHMIANVLAASALTRAAGVSIEALRAGVASFETDAHRNQLVLLSGG 356

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +    A  S++    L  +        +V    G  +     P++ + A  L    +
Sbjct: 357 VSWVNDSKATNSHAASASLSAVDP------VVWIVGGLLKGVDVAPLVQQHARRLKAAIV 410

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGF-IEKGN-------RIEAIRTAIEMLNKQDVLVVA 465
           + +D         I A      P   + + +          A+  A  +  + D +++A
Sbjct: 411 IGND------RLAILAAFERHAPQIPVFEVDSTDTKHVMPRAVEMAHGIATEGDTVLLA 463


>gi|320546319|ref|ZP_08040638.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
 gi|320449040|gb|EFW89764.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
          Length = 451

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 68/425 (16%), Positives = 134/425 (31%), Gaps = 54/425 (12%)

Query: 51  GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS------- 103
           G   D +      + +G + +  S    L D +  +    P +  DN     +       
Sbjct: 40  GKPFDENPAAQSLLEEGIKVVCGSHPLELLDENFELMVKNPGIRYDNPMVSRAIEKNIPV 99

Query: 104 ----LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
                 A  +       I+ +TG++GK++  + + +     G S    G        A +
Sbjct: 100 ITEVELAYMISDAP---IIGITGSNGKTTTTTMIAETLNNGGQSGLLSGNIGFP---ASE 153

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
              T      L                +E SS  L     D         TNL   HIDY
Sbjct: 154 VAQTATDKDTL---------------VMELSSFQL--MGTDTFHPHIAVITNLMPTHIDY 196

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y  AK  + + +   +   + +  D  +KE+ ++         +          
Sbjct: 197 HGTFENYVVAKWNIQKNMTADDFIVLNFNQD-LAKELAEKTAAQVVPFSTTEKVDGAYLD 255

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   +  +  S           +PG   V NAL    +    GI +  + E L   
Sbjct: 256 GDTLYFKGEAIMKAS--------EIGVPGSHNVENALATIAVAKLSGIANEAIKETLSHF 307

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R + +G  +         +     +    K +    + ++I++   G DR     
Sbjct: 308 GGVKHRLQALGEVNGVKFYNDSKSTN---ILATQKALSGFDNSKVILI-AGGLDRGNEFD 363

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++  I      + I+ +  PR      ++         +++  +  +A R A       
Sbjct: 364 ELVPDITGVKL-MVILGESAPR------VKRAADKANVPYVDAKDVADAARIAYSKAEAG 416

Query: 460 DVLVV 464
           +V+++
Sbjct: 417 EVVLL 421


>gi|260899196|ref|ZP_05907591.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AQ4037]
 gi|308107130|gb|EFO44670.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           AQ4037]
          Length = 410

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 124/391 (31%), Gaps = 53/391 (13%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L     I      E  + E     R +  G  +F+        GH      + + A  +V
Sbjct: 43  LNEGYEITGSDLSENPVTE-----RLVSKGATVFI--------GHQ--ASNVEK-ASVVV 86

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVA 130
           VS+A + ++          I +V   R+   L+      +G      +AV GT GK++  
Sbjct: 87  VSTAINEENPEVMAARELRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTTTT 137

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V QI   +GL    +     + S   + RL +   +      S  S            
Sbjct: 138 ALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH--------- 187

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      ++ +    TN+  DH+D +             F   LP    AI+  DD
Sbjct: 188 -----------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDD 236

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +E++ R                 I          K    +     + D    +PG  
Sbjct: 237 PVIRELIPRISRQVITYGFSDDADVRIENYHQEGQQGKFT-VVRKGRANLDITLNIPGRH 295

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSN 367
              NA  A  +     I+   +L+ +        RF+ +G    G     +  DY H   
Sbjct: 296 NALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPT 355

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
            +++ +   R+    + +V+        + +
Sbjct: 356 EVDVTINAARSGWQDKRLVMIFQPHRYSRTR 386


>gi|256425928|ref|YP_003126581.1| UDP-N-acetylmuramate--L-alanine ligase [Chitinophaga pinensis DSM
           2588]
 gi|256040836|gb|ACU64380.1| UDP-N-acetylmuramate/alanine ligase [Chitinophaga pinensis DSM
           2588]
          Length = 463

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 127/440 (28%), Gaps = 60/440 (13%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           Q   Q A+ IV + A                 VV  +   L      LY       + V 
Sbjct: 61  QLADQQADLIVYTPAIPASHTELIWFREKGFEVVKRS-DVLQEITKELY------AITVG 113

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++ ++ +  I + +G                            L    +      
Sbjct: 114 GTHGKTTTSTLIAHILRHTGYGCNAF----------------------LGGISANYDRNF 151

Query: 182 VTHVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +     A     +  R    +       T +  DH+D + T++    A ++    +  K
Sbjct: 152 WSSDKQVAVIEADEYDRSFLKLHPDVAVLTAIDADHLDIYGTEEEVQEAFIQYTRNIKAK 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
            +               +   +          +               +   I       
Sbjct: 212 GTLVAKQGL----HRAAELKGDNHIWYHLEDNKADIYAANIRPDEGGYRFDVIQHNWTLT 267

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D   P+ G   + N + A  +   +GI    +   +     +  RFE++  N        
Sbjct: 268 DIYLPIGGTHNIENTVAAIAVAHLLGIADEKIKAAIADFKGIKRRFEYLVKNDY-QIYID 326

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN 419
           DYAH    L  ++ + R +   R  VV        + +    G   +L LAD  ++    
Sbjct: 327 DYAHHPEELRALISSARALFPDRKCVVLFQPHLYTRTRDFATGFAESLSLADEVLLLPIY 386

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRT----AIEMLNKQDV------L- 462
           P  E P      E I   I   +   I K + +  ++             D+      + 
Sbjct: 387 PARELPIEGVHSEMIAKMITKPV-QVIRKEDVLSWVKANSAPLFITAGAGDIDQFREPVE 445

Query: 463 -VVAGKGHETVHIVTNGEKK 481
            V+ GKG     IV N E K
Sbjct: 446 EVLNGKG-----IVENEEVK 460


>gi|239828070|ref|YP_002950694.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacillus sp. WCH70]
 gi|259509774|sp|C5D6B2|MURC_GEOSW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239808363|gb|ACS25428.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. WCH70]
          Length = 433

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 105/351 (29%), Gaps = 49/351 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++  A      P++      +FL  F  +         +AVTG+ GK+S
Sbjct: 64  VIAGNAFPETHEEIQAAHELGVPVIR---YHRFLGEFLQKFTS------IAVTGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q    +S+ IG               T   I  +K   + + +   H    
Sbjct: 115 TTGLLAHVMQGVHPTSYLIG-------------DGTGKGIEGSKYFVFEACEYRRHFLSY 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
              + +               TN+  DH DY       F+A     E  L  +   I   
Sbjct: 162 FPDYAI--------------MTNIDFDHPDYFANIDDVFSAFQ---EMALQVKKGIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y   + K            G    F     V                   F  P  G
Sbjct: 205 DDEY---LQKIQAKVPVLFYGFGDDNDFQARNVVKTTEGTAFDVFVRNTFFASFEIPHFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC    +D  ++ E L+    V  RF           +  DYAH    
Sbjct: 262 DHNVLNALAVIALCHYEEMDVRIIQERLKTFQGVKRRF--SEKVLGNQILIDDYAHHPRE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD 417
           +   +   R    GR IV         R Q       +     AD   + D
Sbjct: 320 IIATIDAARQKYPGREIVAIFQPHTYTRTQTFLREFAESLQQ-ADQVYLCD 369


>gi|323139874|ref|ZP_08074902.1| amino acid adenylation domain protein [Methylocystis sp. ATCC
           49242]
 gi|322394870|gb|EFX97443.1| amino acid adenylation domain protein [Methylocystis sp. ATCC
           49242]
          Length = 1270

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 125/409 (30%), Gaps = 38/409 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V S A    +          +++    R      A  L G+   +++ V G+ GK+
Sbjct: 48  ADLVVFSPAVPRDNVELKAARERGLVI----RSRAGALADLLDGR---DVIGVAGSHGKT 100

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + A+ +  I + +G S                          L    +  S   +     
Sbjct: 101 TTAAMLAAILEHAGFSPGF--TIGAA-------------APALGDVNARWSEGSLFVAES 145

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +   LD  R           TN+  +H +++  +     A   + E         +  
Sbjct: 146 CEAFRALDHVR-----PAHCLVTNVDDEHSEHYGGRDRLEAAFAAMIERTRSDGHIVLC- 199

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D      M     +       G +  +   +            I+            P
Sbjct: 200 -GDDPFLAAMAEKPGSRAVTYGFGDKSSWRADRIERGRDAVAFDAIAWGRPLGRIRLKAP 258

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+G         LE+   V  R+E VG  + G RI+ D+AH   
Sbjct: 259 GAHNAANALGALALANALGAPFDAAALALERFIPVGRRWERVG-EADGVRIFDDFAHHPT 317

Query: 368 SLEMILKNIRTITS--GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED- 424
            +   L   R      G+++ +          +       AL +AD  IV   +   E  
Sbjct: 318 EIAATLAAARDSAEAGGKVVAIVEPLSHARICRLATHYARALSMADYTIVLPVDGAGEPT 377

Query: 425 PEKIRAEIIHGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P      ++H +       F       +A  T   +    DV+V  G G
Sbjct: 378 PADSSDALLHDVFRRSGLRFACCNGPTDAASTVAALAGPGDVVVTMGAG 426


>gi|187931943|ref|YP_001891928.1| Mur ligase family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712852|gb|ACD31149.1| Mur ligase family protein [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 561

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 118/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           A+ +        +    I   D         K +        +        +L K     
Sbjct: 283 AEAKSIVFRALGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYAC 342

Query: 287 NKQQVTISV----------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             +                   +         +  + NA++A  L   + I   ++ + L
Sbjct: 343 IVEDGNFVWVEANFKKVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLDISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANIFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   +     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|163868712|ref|YP_001609924.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella tribocorum CIP
           105476]
 gi|189028974|sp|A9IWA4|MURC_BART1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161018371|emb|CAK01929.1| UDP-N-acetylmuramate--alanine ligase [Bartonella tribocorum CIP
           105476]
          Length = 475

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 100/283 (35%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +  A   A  R F E +P    A++  D    + +  R  
Sbjct: 173 LPADIAVVTNIDAEHLDHYGSFDAVRTA-FRQFVENVPFYGFAVLCVDHPEVQSLAGRID 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNA 315
           +          Q     L             +    K    +       P+ G+  V NA
Sbjct: 232 DRWVITYGANPQADVRFLNLSRDGQKTHFDVLVRSRKTGRKIELKNLLLPMAGQHNVANA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +GI + L+ + L +   V  RF   G + RG  I+ DY H    ++ +L+ 
Sbjct: 292 TAAIAIAHELGISNELIKKGLAEFGGVKRRFTRTG-SWRGIEIFDDYGHHPVEIKAVLRA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R    GR+I +      R      +    A     AD  ++T      E+P      ++
Sbjct: 351 ARESAKGRVIAI--AQPHRYSRLYHLFDDFAACFNDADTVLITPVYAAGEEPIVGFGSQE 408

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +   I + G        +  + +    +    +D +V  G G+
Sbjct: 409 LVEHIKMAGHRDVRLIHDLEDVVSLVSKFAQAEDYVVFLGAGN 451


>gi|254374519|ref|ZP_04990000.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572238|gb|EDN37892.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 561

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 119/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKE------------VMKRAHNAGCRVLSVGYQGKF 276
           A+ +        +    I   D    +            V +       +          
Sbjct: 283 AEAKSIVFRALGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHNMKYYLAKADYAC 342

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I               + +   +         +  + NA++A  L   +GI   ++ + L
Sbjct: 343 IVEDGNFVWVEANSKKVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   +     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|145596004|ref|YP_001160301.1| FolC bifunctional protein [Salinispora tropica CNB-440]
 gi|145305341|gb|ABP55923.1| FolC bifunctional protein [Salinispora tropica CNB-440]
          Length = 444

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 19/136 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T      + +D AH    +   +  ++      +++ V G   D+D      
Sbjct: 302 PGRLERVRTAPT---VLLDGAHNPQGMAATVTALQEEFAFSKLVAVLGVLADKDA---FS 355

Query: 402 MGKIALDLADIAIVT-DDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + ++   + D  +VT + +PR   +++   + AE++ G    +      +AI  A+ +  
Sbjct: 356 LLELLEPVVDQLVVTRNSSPRAMPTQELATLAAEVL-GPDRVVVAEQMPDAIEAAVALAE 414

Query: 458 ---KQDV----LVVAG 466
                ++    ++V G
Sbjct: 415 QDVPGELAGIGVLVTG 430


>gi|72382768|ref|YP_292123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL2A]
 gi|122063254|sp|Q46JA8|MURD_PROMT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72002618|gb|AAZ58420.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL2A]
          Length = 469

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 127/358 (35%), Gaps = 35/358 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A           + +TGT+GK++V + +  I + + L++   G      S       
Sbjct: 106 GEVALAWERLTHIPSVGITGTNGKTTVTNMLNHILKLNNLNTDMGGNVGKALSK------ 159

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  +A      + Q +  + +E SS  ++      +    G +T    DH++ H  
Sbjct: 160 -------IALENMKNNDQELDWLVLELSSFQIEGS--PKVAPTIGIWTTFTPDHLERHND 210

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            ++Y        +  L ++S   IY  D       ++    G     VG   + ++ +  
Sbjct: 211 MESY-----FKIKRSLLEKSSIRIYNSDDQYLSSKRKELPKGI---WVGTNQQSLYSQYQ 262

Query: 283 CAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               +++      + + F      +PG+  + N L+A      IG+D + + + ++    
Sbjct: 263 KFWIDQKGYIFEDKKQLFHSSILNIPGKHNLQNLLLAIAAAREIGLDDSSIAKSIKSFKS 322

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +P R E++G  +         A   +S    LK++        I++   G  +     P 
Sbjct: 323 IPHRLEYLGNVNNLSFYNDSKATNFDSSITALKSVP-----HPIILLAGGIQKKGDFMPW 377

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           + +I      I +     N   E+       I   I   I K N  EA   +I +  +
Sbjct: 378 VKQIKQSTNGIVLFGLSANNLKEELL-----ISSYIGEIIVKKNLEEATIASINIARE 430


>gi|303239589|ref|ZP_07326114.1| FolC bifunctional protein [Acetivibrio cellulolyticus CD2]
 gi|302592760|gb|EFL62483.1| FolC bifunctional protein [Acetivibrio cellulolyticus CD2]
          Length = 425

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E +          +D AH       +   ++    G+ I +F  G  +D+    I
Sbjct: 291 WPGRLEVLSKQPV---FLIDGAHNGEGAAALAMVLKAYFPGKKI-LFIVGALKDKEISSI 346

Query: 402 MGKIALDLAD-IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           + +  L LA     VT D+ R+   + +   ++      +     +EA++T++ ++++ D
Sbjct: 347 I-EPTLPLAKGYITVTPDSGRALPSKDLADFVLQYCKNVLVSDTIVEAVKTSLSLVSEDD 405

Query: 461 VLV 463
           ++ 
Sbjct: 406 IIC 408


>gi|238912356|ref|ZP_04656193.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 422

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 116/391 (29%), Gaps = 42/391 (10%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
             + + + A     K    +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVIQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPA 207

Query: 278 HLKKV--------CAIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCI 323
            +  V               +  ++     F          PLP   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLARLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SRLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +  +A + AI+    +D ++V G
Sbjct: 376 N----VYDSVAQAWQAAIDAAQPEDTVLVCG 402


>gi|218509398|ref|ZP_03507276.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli Brasil 5]
          Length = 248

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 64/174 (36%), Gaps = 12/174 (6%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   + NA  A  +   +GI S  + + L     V  RF   G    G +I+ DY 
Sbjct: 57  MPMPGRHNISNATAAIAVANRLGISSVDIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYG 115

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    ++ +L+  R    GRII V      R      +  + A     AD   +      
Sbjct: 116 HHPVEIKAVLRAAREACKGRIIAV--HQPHRYSRLASLFEEFAACFNDADSIFLAPVYAA 173

Query: 422 SEDPEK------IRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
            ED  +      + + I  G        +  E + +   E+    D +V+ G G
Sbjct: 174 GEDAIEGVDSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLLGAG 227


>gi|270290995|ref|ZP_06197218.1| folylpolyglutamate synthase [Pediococcus acidilactici 7_4]
 gi|270280391|gb|EFA26226.1| folylpolyglutamate synthase [Pediococcus acidilactici 7_4]
          Length = 424

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 6/152 (3%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            A  L    G   +        L    PGR E +        + +D AH    ++ + ++
Sbjct: 263 AAVVLSRQRGWKLSADQIRRASLQARWPGRMEIMQQAPL---VVLDGAHNLPGVQALKQS 319

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
           ++T    R I +     D D+  +P++ ++         +T+  NP      +    + +
Sbjct: 320 LQTYWQDRPIHILAAILD-DKLFQPMIDELLTIPNAQLTLTNFQNPLHRQVVQPAELVAN 378

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  + N   A+R  I+  N +DV+++ G
Sbjct: 379 EARQINYEANWRTALRQLIKQANPRDVVIITG 410


>gi|240950384|ref|ZP_04754647.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
 gi|240295098|gb|EER45930.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
          Length = 475

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 138/440 (31%), Gaps = 54/440 (12%)

Query: 47  VAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFL 102
           +A  G K     FI        GA  +V SSA    +           P++      + L
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAIDESNPEVAAAKEARIPVIQRA---QML 111

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +      +G      +A+ GT GK++  + +  I   +GL    +     + S  ++  L
Sbjct: 112 AEIMRFRHG------IAIAGTHGKTTTTAMISMIYTEAGLDPTFV-NGGLVKSAGKNAHL 164

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                     A +  S     H+    S                   TN+  DH+D +  
Sbjct: 165 G---ASRYLIAEADESDASFLHLQPMVS-----------------VVTNIEPDHMDTYGG 204

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                      F   LP    A++ ADD    E+  +                   ++  
Sbjct: 205 DFEKMKETYVRFLRNLPFYGLAVMCADDETVMEIAPKVGRQVISYGFSEKADY--RIEDY 262

Query: 283 CAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   T+     +   +   +PG     NA  A  +    GI +  +L  L     
Sbjct: 263 QQTGFQGHYTVVCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQG 322

Query: 342 VPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              RF+ +G+  R      +  DY H    +++ +K  R     + +V+        + +
Sbjct: 323 AGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTR 382

Query: 399 R--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAI 449
                  ++     D  I+ +     E P      + +   I + G    I   +  +  
Sbjct: 383 DLFDDFVQVLSQ-VDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLG 441

Query: 450 RTAIEMLNKQDVLVVAGKGH 469
               +++   D+++  G G+
Sbjct: 442 EVLDQIIQDGDLILAQGAGN 461


>gi|258511797|ref|YP_003185231.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478523|gb|ACV58842.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 432

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/386 (13%), Positives = 105/386 (27%), Gaps = 32/386 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            +   + +       V GT+GK SV + +  +    G  +             +      
Sbjct: 29  LSKLDHPESDLCFYHVAGTNGKGSVCAMLAAMLTALGYRTGLYTSPGLGGFNGRVAIDGA 88

Query: 165 P----------SPIYLAKALSYLSSQGVT---HVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           P            +  A   S   ++         +   S G+++   +         TN
Sbjct: 89  PISEPEFAEHVEAVRRASDTSDPPTEFEVLTAVALLAFRSAGVERVVWETGLGGRLDATN 148

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +   H+             +      + +E   I+             A+    R  +  
Sbjct: 149 VVWPHVTAITNVSYDHVEILGPTLVDIAREKAGIVKPGVPVVTACADGAYRVIERTAARR 208

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV-------AAGLCIA 324
                   + V        V +    +      P                   A      
Sbjct: 209 GSRLVSVGRDVQFTITGAGVRLRGAYRGLFRDAPSVRLGLCGEHQAQNAAVSLAMLELGE 268

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR- 383
             I  A     L  L  V         +  G  + +D AH       + + +R +  G  
Sbjct: 269 GRIAEANWERALASLERVRWPLRCEVFDVGGRLVVIDGAHNEEGARTLARALRRLGKGVG 328

Query: 384 ---IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA---EIIHGIP 437
                +VF    D+D   R ++ ++     D  +V   +PR  DP  + A   EI   + 
Sbjct: 329 ANGWRMVFAAFADKDV--RGMLAQMLPLACDALMVRSPHPRGADPRALAALACEIRPDLS 386

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 +  +A++ A++      ++V
Sbjct: 387 -IHVMSSIEDAVQEALDHPEP--IVV 409


>gi|197302123|ref|ZP_03167183.1| hypothetical protein RUMLAC_00850 [Ruminococcus lactaris ATCC
           29176]
 gi|197298810|gb|EDY33350.1| hypothetical protein RUMLAC_00850 [Ruminococcus lactaris ATCC
           29176]
          Length = 466

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIA 406
                       VD AH  ++ + +  ++     GR  I++ G   D++  K   +  I 
Sbjct: 305 RFTFLMEHPVFLVDGAHNEDAAQKLRMSMERYFPGRRLILILGVFKDKEYEK---IASIL 361

Query: 407 LDLADIAIVTDDNP---RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             LA     T D P   R+   EK+              G   +A+  A++   
Sbjct: 362 CPLAQQVY-TVDLPNVERTLPAEKLAECAKKYCRQTAAAGRIEDAVEKAMKAAE 414


>gi|304388011|ref|ZP_07370182.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis ATCC 13091]
 gi|304337959|gb|EFM04098.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis ATCC 13091]
          Length = 424

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 125/393 (31%), Gaps = 37/393 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +    
Sbjct: 28  SEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAVN 87

Query: 163 TTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
             P                   I L        +     +  +     L+     RLD +
Sbjct: 88  AEPVSDDTIIASFERIEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGRLDAV 147

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G    +    +D+          ++   +  + +     I   +     ++  A  
Sbjct: 148 NAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPASLVAHAEA 206

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G ++L V    +F  L+ +   + +     S +        P P     Y    AA   
Sbjct: 207 IGAKLLMVQRDFEFHALENIQ-WNYRFHPQHSDDPTRNRNALPFPALRGAYQLSNAACTL 265

Query: 323 IAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +   +  +   +        L   PGRF+ +          +D  H  ++   + +++
Sbjct: 266 TVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRRSL 322

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
             +    +   VF    D+D      + +I  D  D   +   D PR    E ++ ++  
Sbjct: 323 INLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHE 379

Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I          EA R A     + D +VV G
Sbjct: 380 HSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|256003375|ref|ZP_05428366.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
 gi|255992665|gb|EEU02756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
          Length = 434

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 114/360 (31%), Gaps = 37/360 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I AVTG+ GK++  + +  + +  G   +  G          +    T   +
Sbjct: 79  FFELCPAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPLLSKIEEIKDTDKVV 138

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L               TN+  +H+D H++ + Y +
Sbjct: 139 ------------------LELSSFQLH---TMTKSPNVAVVTNVSPNHLDVHKSMEEYVS 177

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F     ++   + + +D   +   +   +          +   +    +    + 
Sbjct: 178 AKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDG 237

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  T   +  D                 +AA   +   +D  ++ +       V  R E 
Sbjct: 238 ETETEIAKASDIV-----IPGVHNVENFLAATAAVIDCVDRDVIRKVATTFTGVEHRIEL 292

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +         A +       L + +       +++   G D+      +   IA  
Sbjct: 293 VREINGVKFYNDSIASSPTRTIAGLNSFKD-----KVILIAGGYDKKIPYDALGPVIAEK 347

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  + ++    P+ E  + +R E      G      +  +  EA++ A    +  DV+++
Sbjct: 348 VKCLVLIGQTAPKIE--KALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVIL 405


>gi|218780054|ref|YP_002431372.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
 gi|218761438|gb|ACL03904.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
          Length = 473

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 119/369 (32%), Gaps = 35/369 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTGT GK++ ++ +  +    GL          +++F  ++++ T          +Y+
Sbjct: 118 IMVTGTHGKTTTSALIAWLIAAVGLD-PTFMIGGILTNFKSNHQVGTG---------AYM 167

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +G  + +          H            T++  DH D  +      +A   L + L
Sbjct: 168 VIEGDEYDTAFFDKGPKFLHYTPS----RTVLTSVEFDHADIFKDLDHVKSAFTSLVKNL 223

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +       ADD     + +            G +  +   +                 
Sbjct: 224 PRESLLVFQEADDNIKDILQQADCW--LTPYGFGEKAPWRIGEMRTEPPYTFIEVFRRGE 281

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
              +F  PL G+    N L A  +   + I    +   LE    V  R +  G  +    
Sbjct: 282 FFAEFKVPLMGKHNALNCLAAIAVVDDLRIPVEGIQAGLETFKGVARRQQVRGVKN-NIT 340

Query: 358 IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIA 413
           +  D+AH   ++   +K ++     GR+  VF    +    +R +   +     D ADI 
Sbjct: 341 VMDDFAHHPTAVRETIKAVKPFYDKGRVAAVFEPRTN--SSRRKVFQDVYPTVFDDADII 398

Query: 414 IV-----TDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +      +  P  E    EK+  ++           +    I    + L   D+ ++  
Sbjct: 399 CIPQPTLLEKIPPEERFSSEKLVEDLKARGKDAHFFADVQGIIDFLAKTLEPGDLALIMS 458

Query: 467 KG-----HE 470
            G     HE
Sbjct: 459 NGGFENIHE 467


>gi|110808025|ref|YP_691545.1| putative ligase [Shigella flexneri 5 str. 8401]
 gi|110617573|gb|ABF06240.1| putative ligase [Shigella flexneri 5 str. 8401]
          Length = 440

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 85  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 143

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 144 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 185

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 186 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 245

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 246 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 304

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 305 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 359

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 360 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 415


>gi|300818544|ref|ZP_07098753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 107-1]
 gi|300916600|ref|ZP_07133322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 115-1]
 gi|300922863|ref|ZP_07138946.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 182-1]
 gi|300928056|ref|ZP_07143606.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 187-1]
 gi|300987091|ref|ZP_07177998.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 45-1]
 gi|300988332|ref|ZP_07178628.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 200-1]
 gi|301048563|ref|ZP_07195580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 185-1]
 gi|301329268|ref|ZP_07222245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 78-1]
 gi|301646689|ref|ZP_07246552.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 146-1]
 gi|309792871|ref|ZP_07687299.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 145-7]
 gi|312965914|ref|ZP_07780140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|300299607|gb|EFJ55992.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 185-1]
 gi|300305950|gb|EFJ60470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 200-1]
 gi|300407786|gb|EFJ91324.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 45-1]
 gi|300416112|gb|EFJ99422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 115-1]
 gi|300420812|gb|EFK04123.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 182-1]
 gi|300463903|gb|EFK27396.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 187-1]
 gi|300528948|gb|EFK50010.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 107-1]
 gi|300844428|gb|EFK72188.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 78-1]
 gi|301075097|gb|EFK89903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 146-1]
 gi|308123157|gb|EFO60419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 145-7]
 gi|312289157|gb|EFR17051.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|315288404|gb|EFU47802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 110-3]
 gi|315298998|gb|EFU58252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 16-3]
 gi|324005176|gb|EGB74395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 57-2]
 gi|324013743|gb|EGB82962.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 60-1]
          Length = 445

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 149 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|15834759|ref|NP_296518.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Nigg]
 gi|7190176|gb|AAF39017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           muridarum Nigg]
          Length = 433

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 117/395 (29%), Gaps = 73/395 (18%)

Query: 72  VVSSAYSLQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           VV S    +D      +    + VV +        A +      +    +TGT GK++  
Sbjct: 79  VVRSPGISKDHPWVKAARAAQISVVTDI-----QLAFQTKEFIEQKSFGITGTVGKTTTI 133

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F++ + +++G+ +F +G           N                          VE S
Sbjct: 134 LFLEYLLRKAGIPAFAMGNVGVPILDGMQNS---------------------GVRLVEMS 172

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L         L  G   N+  +H+DYH +   Y  +K                    
Sbjct: 173 SFQLADQETSYPVLSGGMILNISDNHLDYHGSFLEYCQSKQ------------------- 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                           +     +  ++  ++ C     ++V   +   D +         
Sbjct: 214 -------------NLSLCMRNPEDLWVGDQRFCGRSYWEEVQKYMRLLDKESALKPLYLH 260

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             YN   A  L  A    +  +             R E++G       I    A T  + 
Sbjct: 261 DKYNYCCAYLLAQAEFPIAKSLFIEAVATFKKPSHRMEYLGEKCGVHYINDSKATTVRAT 320

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L +I     G   +V   G ++      ++  +    A   +        E  ++I 
Sbjct: 321 EKALLSI-----GSRAIVILGGRNKGYSFVSLLPSL-RRFAKSVV-----AMGECAQEIA 369

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + + G P      N  EA+  A E     DV+++
Sbjct: 370 QD-LDGFP-VTVVRNLHEALLCAEEQAIPGDVVLL 402


>gi|270284926|ref|ZP_06194320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Nigg]
 gi|270288953|ref|ZP_06195255.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Weiss]
 gi|30316140|sp|Q9PLG5|MURD_CHLMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 416

 Score = 53.7 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 117/395 (29%), Gaps = 73/395 (18%)

Query: 72  VVSSAYSLQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           VV S    +D      +    + VV +        A +      +    +TGT GK++  
Sbjct: 62  VVRSPGISKDHPWVKAARAAQISVVTDI-----QLAFQTKEFIEQKSFGITGTVGKTTTI 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
            F++ + +++G+ +F +G           N                          VE S
Sbjct: 117 LFLEYLLRKAGIPAFAMGNVGVPILDGMQNS---------------------GVRLVEMS 155

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L         L  G   N+  +H+DYH +   Y  +K                    
Sbjct: 156 SFQLADQETSYPVLSGGMILNISDNHLDYHGSFLEYCQSKQ------------------- 196

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                           +     +  ++  ++ C     ++V   +   D +         
Sbjct: 197 -------------NLSLCMRNPEDLWVGDQRFCGRSYWEEVQKYMRLLDKESALKPLYLH 243

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             YN   A  L  A    +  +             R E++G       I    A T  + 
Sbjct: 244 DKYNYCCAYLLAQAEFPIAKSLFIEAVATFKKPSHRMEYLGEKCGVHYINDSKATTVRAT 303

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L +I     G   +V   G ++      ++  +    A   +        E  ++I 
Sbjct: 304 EKALLSI-----GSRAIVILGGRNKGYSFVSLLPSL-RRFAKSVV-----AMGECAQEIA 352

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            + + G P      N  EA+  A E     DV+++
Sbjct: 353 QD-LDGFP-VTVVRNLHEALLCAEEQAIPGDVVLL 385


>gi|260220381|emb|CBA27863.1| hypothetical protein Csp_A04400 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 173

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 10/146 (6%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             ++ +        P R         RG  +  DY H  +++  +++ ++ + + R  VV
Sbjct: 10  WDVIRKGWPTFERQPQRSRSFQYVKFRGATVIADYGHNPDAMLALVQAVQALRASRRSVV 69

Query: 388 FGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNR 445
               GD RDQ  R    +I  D  D  ++ +D   R  +  ++ A +  G+        +
Sbjct: 70  ISGAGDRRDQDIRQQ-TEILGDAFDEVVMFEDQCQRGRNDGEVLALLRAGLANAKRTKQQ 128

Query: 446 IE------AIRTAIEMLNKQDVLVVA 465
            E      AI TA++ L   ++ +V 
Sbjct: 129 SEVFGEFLAIDTAMDKLQAGELCLVL 154


>gi|269798311|ref|YP_003312211.1| FolC bifunctional protein [Veillonella parvula DSM 2008]
 gi|269094940|gb|ACZ24931.1| FolC bifunctional protein [Veillonella parvula DSM 2008]
          Length = 435

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 7/157 (4%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
              +    L       S   +          GRFE             D AH +   E  
Sbjct: 265 CALMAVRLLMKEDTNISEETMREGFARTTWAGRFEVKRGL--DRTFIFDGAHNAAGAESF 322

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                         +V     D+DQ    I+ ++      + +V     R+E PE +   
Sbjct: 323 AMTYDELFKDSPKTIVMAILKDKDQE--AIIREVVKVGDTVLVVPAPTDRTEVPETLVEM 380

Query: 432 IIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I   +P        +   A+  A +     D++ V G
Sbjct: 381 IRRTVPKATAQTADSIEAALALAYKHTKTGDIIAVCG 417


>gi|75765115|ref|ZP_00744396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74487397|gb|EAO51332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 337

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 93/277 (33%), Gaps = 21/277 (7%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L    ++  +    +F NL   H+DYH T++ Y  AK  +F+     +   I  
Sbjct: 54  ELSSFQL--MGVESFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDYSVI-N 110

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA   E+            +         +K               E         LP
Sbjct: 111 ADDADVMELSADTKGQKILFSTTKEIEDGACIKDNALY-------FKGEKVVEVSDIVLP 163

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L A  +   +G  +  +   L++   V  R E+V T +         A    
Sbjct: 164 GQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRLEYVTTINNRKFYNDSKATNML 223

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           + E  L           IV+   G DR      ++       A   IVT        P+ 
Sbjct: 224 ATEKALSAFTQ-----PIVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PKL 272

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +RA    G+          EA+  A     + DV+++
Sbjct: 273 VRAAEKAGLDIIESVDTLDEAVVKAYAHSKEDDVVLL 309


>gi|330957969|gb|EGH58229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 486

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 69/422 (16%), Positives = 136/422 (32%), Gaps = 58/422 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G++ +VVSSA +  +          I VV    + L+      +G      +AV GT GK
Sbjct: 75  GSDVLVVSSAINTSNPEVATALERRIPVVPRA-EMLAELMRYRHG------IAVAGTHGK 127

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  +    G   +F IG    +++   + +L T   +      S  S       
Sbjct: 128 TTTTSLIASVFAAGGLDPTFVIG--GRLNAAGTNAQLGTSRYLIAEADESDASFLH---- 181

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+  ++            F   LP    A+
Sbjct: 182 ----------------LQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++               +     +             +  + +  D    
Sbjct: 226 MCVDDPVVREILPLVKR-PTMTYGFSEEADVRAINVRQDGMLTFFTVLRRDREPLDVSVN 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDY 362
           +PG   V N+L    +    G+    +++ L     V  RF+  G          +  DY
Sbjct: 285 MPGNHNVLNSLATIAIATDEGVSDEAIVKGLSGFQGVGRRFQIYGELPVEGGNVMLVDDY 344

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    +  ++  +R     R +V+        R +       ++  D A++ ++ +  P
Sbjct: 345 GHHPREVAAVINAVRGGWPDRRLVMVYQPHRFSRTRDLYDDFVQVLAD-ANVLLLMEVYP 403

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEML-------NKQDVLVVAG 466
             E+P       I G        +  +        I   +E+           D+L+  G
Sbjct: 404 AGEEP-------IPGADSRNLCHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILLCQG 456

Query: 467 KG 468
            G
Sbjct: 457 AG 458


>gi|258546150|ref|ZP_05706384.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
           hominis ATCC 15826]
 gi|258518575|gb|EEV87434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
           hominis ATCC 15826]
          Length = 436

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 125/407 (30%), Gaps = 60/407 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           PQA A GA  +VVS     +  +A   S    +  ++         +RL  K    +LAV
Sbjct: 60  PQAFA-GAGTLVVSPGVDRR-RAAFTHSYAQQI--NDI-----ELFARLNDKP---VLAV 107

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+V + + Q    +G  +   G                          +    +
Sbjct: 108 TGSNGKSTVVTLLAQALNHAGHKAKLCGNIGRP------------------VLDALFDGE 149

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SS+ L+      +     +  N+  DH+D +    AY        +  L +
Sbjct: 150 AADCYVIELSSYQLEL--CPSLYPRVAAVLNVTPDHLDRYDDFAAYA-----AAKANLVR 202

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +S   I   D  +   M           +       +   K+    +    T  +     
Sbjct: 203 QSSICILNGDDEACVAMAEDGQNIIYYGTSATLPNRVEGGKIWLHGHALLETARLRLGGA 262

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                          L    +  A G+    VL  LE    +P R + V   +       
Sbjct: 263 HNHAN---------ILCTLLMLEAYGVAPQQVLSALETFAGLPHRMQLVSEENGVRWYDD 313

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTDD 418
             A    +    L  I         VV   GG        ++ +     +L  + ++  D
Sbjct: 314 SKATNIGAAAAALAGIDG------AVVLIAGGVGKNQDFSLLARELQQANLRGVLLIGVD 367

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           N        + A        F + G   +A+  A  +    D +++A
Sbjct: 368 N------RDMAAAFTAAGIAFEDCGTMDKAVARARALAQAGDSVLLA 408


>gi|229846170|ref|ZP_04466282.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
 gi|229811174|gb|EEP46891.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
          Length = 475

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 120/377 (31%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA    +    A+ +   P++      + L+      +G  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN+  DH+D ++       A    
Sbjct: 173 EADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +                 I   +           I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINILLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFI 334

Query: 354 RGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           R     R+  DY H    +++ +K  R     + IV+        + +       ++   
Sbjct: 335 RPNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLS- 393

Query: 409 LADIAIVTDDNPRSEDP 425
           L D  I+ D     E P
Sbjct: 394 LVDALIMLDVYAAGEAP 410


>gi|89256192|ref|YP_513554.1| hypothetical protein FTL_0832 [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009773|ref|ZP_02274704.1| hypothetical protein Ftulh_03394 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367520|ref|ZP_04983546.1| hypothetical protein FTHG_00773 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144023|emb|CAJ79271.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253336|gb|EBA52430.1| hypothetical protein FTHG_00773 [Francisella tularensis subsp.
           holarctica 257]
          Length = 561

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 119/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKE------------VMKRAHNAGCRVLSVGYQGKF 276
           A+ +        +    I   D    +            V +       +          
Sbjct: 283 AEAKSIVFRALGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYAC 342

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I               + +   +         +  + NA++A  L   +GI   ++ + L
Sbjct: 343 IVEDGNFVWVEANSKKVILPVIEAPLTVRSFAKHNIENAMIAIALSFKLGISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   I     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIILKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|300906078|ref|ZP_07123798.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 84-1]
 gi|301302661|ref|ZP_07208791.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 124-1]
 gi|300402086|gb|EFJ85624.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 84-1]
 gi|300842186|gb|EFK69946.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 124-1]
 gi|315255588|gb|EFU35556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 85-1]
          Length = 445

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 102/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 90  DRWGLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 149 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 441

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 145/389 (37%), Gaps = 42/389 (10%)

Query: 78  SLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            +   S  + SN PIL        K +S  A  L     + I+AV+GT+GK++V   + +
Sbjct: 60  DVIIKSPGVYSNIPILKKARKQKIKIMSELAFSLENSKYKKIMAVSGTNGKTTVTDLISK 119

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I + +   S   G                        A   L +   T +++E SS+ L 
Sbjct: 120 IIKAAHKDSIVSGNIGCP------------------LADKALKTTETTFITMELSSYQL- 160

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                  +       N+  DH++YH+T +AY  AK  +F      +   I Y DD   ++
Sbjct: 161 -GDTPDFRPAISVLLNITPDHLEYHKTMKAYLRAKENIFINQRDGDFTVINY-DDKICRK 218

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + ++   A         +    +      I+ K++  +            + G   + N 
Sbjct: 219 IFEKTKAAVIFFSKTPLKKGVFYDSGSIVINVKEKHYV------IKPKINIVGTHNIENI 272

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A     A G+  A++ + + K   V  R EFV T +         +   +S  + L++
Sbjct: 273 LAAVAASYAAGVKPAVIEKIVSKYKGVEHRIEFVKTLNGVDYYNDSKSTNIDSTRVALES 332

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                  + I++   G D+     P+  ++      +  +       E  +KI+ ++   
Sbjct: 333 FD-----KNILIIMGGRDKGVPYTPL-KELVKQRVKLIFLI-----GEASDKIKKDL--N 379

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              F++ GN   A++       + D+ ++
Sbjct: 380 GASFVDCGNMENAVKQIFRTAVRADIALL 408


>gi|196019058|ref|XP_002118918.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
 gi|190577726|gb|EDV18596.1| hypothetical protein TRIADDRAFT_62903 [Trichoplax adhaerens]
          Length = 456

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 105/317 (33%), Gaps = 36/317 (11%)

Query: 71  IVVSSAYSLQDFSATI------RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           ++VS     +  +         + N PI+   +                  N + +TGT+
Sbjct: 72  VIVSPGIPYKYPNPHKIFTICQKHNVPIVTDIDLL---------FKACPKANYIGITGTN 122

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  S +  I Q +   S   G          +   +                    H
Sbjct: 123 GKSTTTSLINHILQSNNYKSALGGNIGIPVLNLPNFNNS------------------NEH 164

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
             +E SS+ LD   +   K    +  ++  DH+D + + + Y NAK+R+F         A
Sbjct: 165 YILELSSYQLDL--MLNYKFNIAALLSITPDHLDRYASFEDYKNAKLRIFNN-QNHNDFA 221

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II  ++  ++ +  +      + +      + +                  +  + D   
Sbjct: 222 IISLNNHINEGIYNQLIIKNTQTIIPTSSQQLLKKGISVIKDKIYDNYFENQAFNLDLPS 281

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G     N  +A  +   I ++S  ++++L     +P R E      +   +    A 
Sbjct: 282 SLIGPHNAENIAMAYTIAKIINLNSKQIIKNLNTYIGLPHRMELFLKTEKLSFVNDSKAT 341

Query: 365 TSNSLEMILKNIRTITS 381
              S +  L++ + I  
Sbjct: 342 NIASTKEALRSFKNIHW 358


>gi|121727433|ref|ZP_01680561.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|147675374|ref|YP_001218037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|262167568|ref|ZP_06035273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
 gi|121630205|gb|EAX62605.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|146317257|gb|ABQ21796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|227014431|gb|ACP10641.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae O395]
 gi|262024021|gb|EEY42717.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
          Length = 451

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 112/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R   +         +      +K+ A  ++  V
Sbjct: 205 HHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEF---SGEQGEWQAEKITADGSQFHV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 262 LFKGE-RVGQVNWSLVGDHNVSNALMAIAAARHVGVSPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|260427001|ref|ZP_05780980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
 gi|260421493|gb|EEX14744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
          Length = 467

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 71/370 (19%), Positives = 110/370 (29%), Gaps = 68/370 (18%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GKS+ ++ +  I   SG  S   G                   + L   
Sbjct: 119 PPRVVAVTGSNGKSTTSALIHHILTSSGRDSQLAGNIGRGVLDIDPPGDGGVVVLEL--- 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS+  D  R   +      FTNL  DH+D H     YF AK RL
Sbjct: 176 ----------------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRL 217

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F E  P          D      +    + G     V        L         ++  +
Sbjct: 218 FSEGGPDRCVI---GVDEAEGRYLANQMSEGAADDRVIRVSSGTRLSGPGWDVFARKGFL 274

Query: 294 SVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           +   K       D   +  LPG     NA  A     A+G+   +V         +P R 
Sbjct: 275 TEWRKGRQVASIDLRQVRGLPGAHNHQNACAAYAAARALGVAPRVVEAAFMSFEGLPHRS 334

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---------GGDRDQG 397
           + V        +    A   +     LK ++     R I               G  +  
Sbjct: 335 QIVAEAGGVAYVNDSKATNVD---AALKALQAFPKVRWICGGLMKEGGLGGLAPGFPNVV 391

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEM 455
           K  ++G+ A   A                        G+PG       +   A+  AI  
Sbjct: 392 KAYVIGREAAGFA-----------------------LGLPGVEAEVCTDMETAVTRAIAE 428

Query: 456 LNKQDVLVVA 465
               +V+++A
Sbjct: 429 AQPGEVVLLA 438


>gi|254719464|ref|ZP_05181275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           83/13]
 gi|265984470|ref|ZP_06097205.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306839243|ref|ZP_07472060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
 gi|264663062|gb|EEZ33323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306405790|gb|EFM62052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
          Length = 467

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 103/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + E L+     AII  DDAY + +  R H AG RV+ +  +                   
Sbjct: 207 IKERLVAASGTAIIGVDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWSQD 266

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             ++     + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|84394306|ref|ZP_00993030.1| folylpolyglutamate synthase [Vibrio splendidus 12B01]
 gi|84375074|gb|EAP91997.1| folylpolyglutamate synthase [Vibrio splendidus 12B01]
          Length = 420

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/380 (13%), Positives = 103/380 (27%), Gaps = 29/380 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++ +     K  ++++ V GT+GK S  + ++ I   +G S         I    +    
Sbjct: 37  AVASKANLTKPAQHVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRIN 96

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                            +       E S    +   L  ++       ++    +     
Sbjct: 97  GQDLSDEKMVQSFNFIEKERG----EISLSFFEYGTLAALRAFQTEAVDVVLLEVGLGGR 152

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF------ 276
             A    +  +               DD       K       +    G           
Sbjct: 153 LDATNIVEHDVSVITSLAVDHVDWLGDDINVIGFEKAGIYRSGKPAICGQPKPPATVAAH 212

Query: 277 -------IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                   +   +   ++    T +     F           + NA  A        +  
Sbjct: 213 ADDIKAEFYQVGIQYTYDVDGDTWNWRSGAFQLESLPIPSLPLPNAATALMALGTSELSI 272

Query: 330 ALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMI-LKNIRTITSGRIIVV 387
           + V       +   PGR +     S    I +D AH  +S E    +  +      + VV
Sbjct: 273 SDVNIVNGMKNAQLPGRMQK---ISEQPVIVLDVAHNPHSAEYFAQQVTKKYAGKNLHVV 329

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRI 446
                D+D    P   ++   +         N PR+    ++   +  G+       N +
Sbjct: 330 VAMLHDKDI---PATLEVLAPITTHWYPASLNGPRAATAAELCQSLPQGVEQH---SNPV 383

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
            A   A+  +   DV++V G
Sbjct: 384 AAFEAALASVKGDDVVLVVG 403


>gi|308388881|gb|ADO31201.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria meningitidis alpha710]
 gi|325129846|gb|EGC52653.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis OX99.30304]
 gi|325136084|gb|EGC58694.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis M0579]
          Length = 424

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 126/397 (31%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVGEVKKRMKLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAINAEPVSDDTIIASFERIEAARSEISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +    G    +    +D+          ++   +  + +     I   +   K ++ 
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPKSLLS 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V    +F  L+ +   + + +   S          P P     Y    A
Sbjct: 203 HAEAIGAKLLMVQRDFEFHALENIQ-WNYRFRPQHSDSPARNRNSLPFPALRGAYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +   +  +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACALTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ 
Sbjct: 319 RRSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDMPRGMTLESLQN 375

Query: 431 EIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++    I          EA R A     + D +VV G
Sbjct: 376 KLHEHSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|262401830|ref|ZP_06078395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
 gi|262351802|gb|EEZ00933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
          Length = 451

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 103/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S V  +    G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLDHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P           E +      GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDEALADVFKRGCWSETEFSGEQGEWQAEKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLFKGERVGQVNWSLVGDHNVSNALMAIAAVRHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLRS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAKAGDQILV 431


>gi|281356446|ref|ZP_06242938.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317138|gb|EFB01160.1| UDP-N-acetylmuramate--L-alanine ligase [Victivallis vadensis ATCC
           BAA-548]
          Length = 511

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           P PG     NAL    L   IG D A  +E LE+   V  R ++ G  + G  +Y DYAH
Sbjct: 319 PQPGFHMAMNALAIDALLEWIGFDPAETIEALERFDGVWRRNDYAGLTASGATVYDDYAH 378

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG------DRDQGKRPIMGKIALDLADIAIVTDD 418
               +    + +R +  G I  VF   G       RDQ    I  ++     D  I+   
Sbjct: 379 NPEKIVSCFRAMREMGDGNIYAVFQPHGYAPFGFMRDQLYLEIEPEL--RNNDRFILLPP 436

Query: 419 NPRSE------DPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       PE++ A+          F+   NR       +      D +V+ G
Sbjct: 437 YYAGGTSSFRPKPEEVLADWQSRCRRPERFMYFPNRELLTDFLLLQSKPGDTIVIMG 493


>gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
 gi|122063251|sp|Q3J787|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
          Length = 453

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 147/441 (33%), Gaps = 57/441 (12%)

Query: 31  NEVSS---DSRHIQAGWIFVAIVGNKEDG----HLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              S    DSR    G    A+     D       F   A+   AE +VVS   +L + +
Sbjct: 33  RGFSIAVMDSRKSPPG--LAALQEQNPDAVLRLGGF-DAALIAEAEQLVVSPGVALSEPA 89

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                   I VV +   F S             ++ +TG++GKS+V S ++ + +++G  
Sbjct: 90  ILAARARGIPVVGDIELFASYV--------KAPVIGITGSNGKSTVTSLLEAMARQAGRQ 141

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G   T +    +  +     + L                   SS  L+      + 
Sbjct: 142 VLAGGNLGTPALELLEKPVPDLYILEL-------------------SSFQLET--TYTLD 180

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +A    N+  DH+D +    AY  AK R++         A     D +    + + H  
Sbjct: 181 AVAACVLNISPDHMDRYPDLDAYCQAKARIYRGTGTMVINA-----DDFRVASLVQPHRP 235

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R            L++        +     E        PL G   + NAL A  L  
Sbjct: 236 CLRFTLGMPAVDEYGLQERAGETWLVR---GHERLLSARRLPLAGRHNLANALAALALGE 292

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G+  A +L  L+    +P R E++   +              +    ++ I     G+
Sbjct: 293 AVGLPRAAMLSALQAFSGLPHRCEWLAEVNGVRWYNDSKGTNVGATVAAIEGIP--CQGK 350

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +I++ G  G +     P+   +      + ++  D  R E        ++   P      
Sbjct: 351 LILIAGGVG-KGADFSPLSKPLIQRARAVVLMGQDASRLE-------AVLASGPPLYRVN 402

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +  EA+  A  +    D +++
Sbjct: 403 SMDEAVVKANVLAQSGDCVLL 423


>gi|296537029|ref|ZP_06899022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Roseomonas cervicalis ATCC 49957]
 gi|296262645|gb|EFH09277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Roseomonas cervicalis ATCC 49957]
          Length = 57

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 28 RKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQA 63
           +I  V  DSR    G +FVA+   + DGH F+  A
Sbjct: 23 LEIRSVGIDSRATGPGELFVALRDAR-DGHDFVADA 57


>gi|313893665|ref|ZP_07827233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441809|gb|EFR60233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 456

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 92/281 (32%), Gaps = 16/281 (5%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +  E SS+ L+   +   + I     N+  DH+  H+T + Y  AK R+FE  L  +  
Sbjct: 159 FLVAELSSYQLET--IKHFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLKSDYL 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   D   +    +   +          +    +    C +      T  +  KD    
Sbjct: 217 VLNIDDPIVADMEHRAPSHILQISQKQTVENGAYYANGQCYVVKNGVATAVIGDKDIHI- 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
              PG   + N L    L  A+G+    +   + + H V  R E V T           A
Sbjct: 276 ---PGSHNIENILTVIALTYALGVPVVEIHRIISEFHGVEHRLERVKTIDGITFYNDSKA 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +S+   L++       + +++   G D+       M ++        I         
Sbjct: 333 TNVDSVVKALESFD-----KPVILLAGGHDKMTPLEEFM-QLVKVKTKAVIF----MGEA 382

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 A    G+       +  +A+    ++    D++++
Sbjct: 383 AERFEAAAKEAGVEPIYRALSMKDAVEQGYKLAESGDIVLL 423


>gi|306844329|ref|ZP_07476921.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO1]
 gi|306275401|gb|EFM57142.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO1]
          Length = 471

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 94/285 (32%), Gaps = 21/285 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +          Q +   + +             +       +  D   P+PG   V NA 
Sbjct: 232 DRRIITYGSNPQAEVRFINQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNAT 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI S  +   L     V  RF   G +  G  I+ DY H    +  +LK  
Sbjct: 292 AAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTG-SWNGVEIFDDYGHHPVEIRAVLKAA 350

Query: 377 RT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------ 425
           R       GR++ +      R      +  + A     AD  IV       E+P      
Sbjct: 351 REATSQAGGRVVAIV--QPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           E++ + I              EA+      +    D +V  G G+
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGN 453


>gi|225574517|ref|ZP_03783127.1| hypothetical protein RUMHYD_02594 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038248|gb|EEG48494.1| hypothetical protein RUMHYD_02594 [Blautia hydrogenotrophica DSM
           10507]
          Length = 451

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 18/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I  A   +    +  +    E SS  L+            +  N+  DH++ H T + Y 
Sbjct: 144 IGNAYTSAASQMKEESVTVAEISSFQLETIETFA--PHVSAILNITEDHLNRHHTMEEYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K  + +     +   + Y +D   ++  +          SV    + I L+    I  
Sbjct: 202 RVKELITKNQGCDDYCILNY-EDEILRKFGENLTPRVIYFSSVRELDEGIFLRDGRIILR 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  I            + G     NA+ A  +    G+ +  +   +     V  R E
Sbjct: 261 LDKKEIPFMK---TQQLRILGRHNHENAMAAIAMAYVAGVSAEEICRSVCNFQAVEHRIE 317

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV                 ++    ++        R  ++ G G D+       +     
Sbjct: 318 FVEEKDGVAYYNDSKGTNPDAAIKGIQA-----MDRPTLLIGGGFDKGSEYDEWIQSFDG 372

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++       +  EKI+      G    I   N  EA++   +  N  D +++
Sbjct: 373 KVRYLVLI------GQTREKIQEAANRLGFHDCILAENLEEAVKICAKKANPGDAVLL 424


>gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
 gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
          Length = 463

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 147/441 (33%), Gaps = 57/441 (12%)

Query: 31  NEVSS---DSRHIQAGWIFVAIVGNKEDG----HLFIPQAIAQGAEAIVVSSAYSLQDFS 83
              S    DSR    G    A+     D       F   A+   AE +VVS   +L + +
Sbjct: 43  RGFSIAVMDSRKSPPG--LAALQEQNPDAVLRLGGF-DAALIAEAEQLVVSPGVALSEPA 99

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS 143
                   I VV +   F S             ++ +TG++GKS+V S ++ + +++G  
Sbjct: 100 ILAARARGIPVVGDIELFASYV--------KAPVIGITGSNGKSTVTSLLEAMARQAGRQ 151

Query: 144 SFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
               G   T +    +  +     + L                   SS  L+      + 
Sbjct: 152 VLAGGNLGTPALELLEKPVPDLYILEL-------------------SSFQLET--TYTLD 190

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            +A    N+  DH+D +    AY  AK R++         A     D +    + + H  
Sbjct: 191 AVAACVLNISPDHMDRYPDLDAYCQAKARIYRGTGTMVINA-----DDFRVASLVQPHRP 245

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             R            L++        +     E        PL G   + NAL A  L  
Sbjct: 246 CLRFTLGMPAVDEYGLQERAGETWLVR---GHERLLSARRLPLAGRHNLANALAALALGE 302

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A+G+  A +L  L+    +P R E++   +              +    ++ I     G+
Sbjct: 303 AVGLPRAAMLSALQAFSGLPHRCEWLAEVNGVRWYNDSKGTNVGATVAAIEGIP--CQGK 360

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +I++ G  G +     P+   +      + ++  D  R E        ++   P      
Sbjct: 361 LILIAGGVG-KGADFSPLSKPLIQRARAVVLMGQDASRLE-------AVLASGPPLYRVN 412

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +  EA+  A  +    D +++
Sbjct: 413 SMDEAVVKANVLAQSGDCVLL 433


>gi|332978085|gb|EGK14823.1| UDP-N-acetylmuramate--L-alanine ligase [Desmospora sp. 8437]
          Length = 466

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 147/435 (33%), Gaps = 51/435 (11%)

Query: 47  VAIVGNKED-GHLFIPQAIAQGAEAIV--VSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
           +A  G +   GH      + +GA+ +V   S      +  A       +L        L 
Sbjct: 48  LATRGAEIHIGHQ---AVLVEGADRVVYSTSIPRDNVELKAAREKGMTVLHRSQMLAAL- 103

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
                    + +  +AV G  GK++ +S + Q  +  G                    + 
Sbjct: 104 --------LNDKQGIAVAGAHGKTTTSSMIAQTMEEGGAD---------------PTYVI 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       SS  V   + E+    L+              TN+  DH++ ++  
Sbjct: 141 GGEVVSLGSNAKAGSSPYVVAEADESDGTFLEY------FPRIAVVTNIEPDHLENYEGS 194

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                   R F   + ++  AI+  DD Y  E+            ++  +  +       
Sbjct: 195 FEKLKEAYRRFLSQVKEDGVAILGWDDPYLPEIAGACRAR-VITYALDREADYTATHLQQ 253

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            ++  Q           D    +PG   V NAL A  +C+  G+    + E L +     
Sbjct: 254 VLNRTQFTVNYQGTPLGDVTIHVPGRHNVANALAAVVVCLEAGLPFDTIAEGLSRFRGAK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            RF+ +G  + G  +  DYAH    +   +  ++ + + RI  VF     R      +M 
Sbjct: 314 RRFQVIG-EADGILVVDDYAHHPTEIRATINGLKAL-NRRIFGVFQPQ--RYSRTHLLME 369

Query: 404 KIALDL--ADIAIVTDD-NPRSEDP------EKIRAEIIHG-IPGFIEKGNRIEAIRTAI 453
           + +     AD  ++TD  +P  E P      E++   +     P  + +  + +     +
Sbjct: 370 EFSRAFTEADELVITDIYSPPGEPPIAGVTSERLAQMVRENSNPNTVYRATKEDVELHLL 429

Query: 454 EMLNKQDVLVVAGKG 468
           +     D+++  G G
Sbjct: 430 QHARPGDLVITMGAG 444


>gi|82546520|ref|YP_410467.1| ligase [Shigella boydii Sb227]
 gi|187734017|ref|YP_001882983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii CDC 3083-94]
 gi|81247931|gb|ABB68639.1| putative ligase [Shigella boydii Sb227]
 gi|187431009|gb|ACD10283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii CDC 3083-94]
 gi|320185327|gb|EFW60099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella flexneri CDC
           796-83]
 gi|332087042|gb|EGI92176.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 457

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|113460502|ref|YP_718566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 129PT]
 gi|112822545|gb|ABI24634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           129PT]
          Length = 436

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 124/397 (31%), Gaps = 56/397 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S   S++           + VV +                 + I+A+TG++GKS
Sbjct: 67  ADLIVISPGLSVKTLEIQTALQAGVEVVGDIE--------LFCRHANKPIIAITGSNGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +  GL     G                   + L         Q      +
Sbjct: 119 TVTTLVSEMAKEDGLKVGMGGNIGIP-------------ALEL-------LQQDYDIYVL 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++E        A   
Sbjct: 159 ELSSFQLET--TYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQRAVINAE-- 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                  +V+    +    +     Q  +    +    +   +  + +   +      L 
Sbjct: 215 -------DVLTTTEDLKSPITFGESQADYWLKTENGKQYLMAKERLILPCDE----MKLV 263

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A+ L  A+ I    +   L K   +  RF+          I    A    
Sbjct: 264 GRHNYMNALAASALVQAVDISFTAIRTALRKFTGLAHRFQLAYQKDDVRWINDSKATNVG 323

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L  +    + ++ ++ G  G +      +   I            D         
Sbjct: 324 STVAALTGL--YVANKLHLLLGGDG-KSADFSELATLINQPHIYCYCFGQDG-------- 372

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E+              +AI      L + D++++
Sbjct: 373 --KELAALSVQSQLFDTMEQAIEAIRPNLQQGDMVLL 407


>gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 734

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 140/469 (29%), Gaps = 53/469 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +L   L+       +  I   +   + I+ G  + A              A  +GA 
Sbjct: 295 TVGKLCEILNAELRNAADVPITSFAFGKQKIKPGCAYFAADKET------AVAAFEKGAS 348

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ +                P +VV N    LS  A  +        +AV  +  K + 
Sbjct: 349 VIITTQPIE----------KIPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKINP 398

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S ++Q+      +   I  T+  +S       +TP              +    V   +
Sbjct: 399 LSMIEQMLSSKMETVHSISVTNNYNSMLHAMFASTP--------------KTEAAVINVS 444

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +G +  R+        +         +  +  +     +       + +    II  D
Sbjct: 445 CVNGGNVERVSQTANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINID 504

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +           + V  +    +   +   HNK    I     ++        +
Sbjct: 505 DKNLAGIFTI--PQDIITIGVDNRMADYYADNIELSHNKISFDIIHGADNYHIELYSDDK 562

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH----T 365
             VY AL    L   +GI    ++  +EK     G       N RG  +  D+ +    +
Sbjct: 563 HSVYQALATFALGEIMGIPPKQIIPAIEKYRPSTGLTTVR--NERGIYVISDFENEAVES 620

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDNPRS 422
             +    L  ++     R I V    GD D+ +  I   +G I    +    V       
Sbjct: 621 VGAALKELCTMQLPPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVDITVC----YG 676

Query: 423 EDPEKIR--AEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
           E   ++   A++      F+ K N  +A+       L   D ++   KG
Sbjct: 677 ETAAELMKTADLKS---KFVIKLNTRQALTEFLKLNLRDNDAVLF--KG 720


>gi|228999246|ref|ZP_04158826.1| Folyl-polyglutamate synthetase [Bacillus mycoides Rock3-17]
 gi|229006793|ref|ZP_04164426.1| Folyl-polyglutamate synthetase [Bacillus mycoides Rock1-4]
 gi|228754415|gb|EEM03827.1| Folyl-polyglutamate synthetase [Bacillus mycoides Rock1-4]
 gi|228760443|gb|EEM09409.1| Folyl-polyglutamate synthetase [Bacillus mycoides Rock3-17]
          Length = 436

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/384 (12%), Positives = 104/384 (27%), Gaps = 41/384 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + +               +   + +   TP          
Sbjct: 45  KCVHLAGTNGKGSTLTYMRYMLEAGKYKVGTFTSPYIETFNERISVNGTPIADKEITELV 104

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      +    +     GL   R D   ++  
Sbjct: 105 NMVKPVVEKLDETDLGEATEFEIITVMAICYFGKINFCDIVLFETGLG-GRFDSTNVVHP 163

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG-CR 266
             T +     D+                 ++    P I    D  + EV+++        
Sbjct: 164 VLTMITNIGHDHMHILGNTLAEIAYEKAGIIKSGVPVITGVQDEEALEVIQKVAQEKTAN 223

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA---AGLCI 323
           +   G Q   +H +      +          ++         +       +         
Sbjct: 224 LYEFGKQFTAVHQRSDEDGEHFDFSCPFASFEEVQISMKGSHQVGNAALALMGIMYLKTY 283

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +          GRFE +        + +D AH    +  ++K +    + +
Sbjct: 284 LSFLMEEEHIGVGLSEAYWIGRFERL---QSNPDVIIDGAHNPEGIASLVKTVTAHYNDK 340

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
            I+V F   GD+         +   D       T D  R+   E++            E 
Sbjct: 341 NILVLFTALGDKQLDNMVGQLETIADEMTFTTFTFD--RAISAEELADYSRKETKQVFE- 397

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            N  EAI   +  L + DV ++ G
Sbjct: 398 -NWKEAIDAKMNNLQENDVFIITG 420


>gi|323340616|ref|ZP_08080868.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           ruminis ATCC 25644]
 gi|323091739|gb|EFZ34359.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           ruminis ATCC 25644]
          Length = 456

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 93/281 (33%), Gaps = 20/281 (7%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            +  E SS  L    ++ ++      TN+   H DYH +++ Y  AKMR+ +     +  
Sbjct: 164 VMVTELSSFQL--MGIEKLRPHIAVLTNIYEAHTDYHGSRENYVKAKMRIVKNQKEDDYF 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + +      + + K                +  ++K               E       
Sbjct: 222 VVNWDS-EEWRNLSKLTKAKIVPFSRQDTTEEGAYVKNGVIF-------FRGEEIMHVDE 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V NAL A  +    G  +  + E L     V  R ++V T +         A
Sbjct: 274 IKVPGSHNVENALAAISVAKIEGQSNENIAEVLRTFSGVRHRTQYVTTFNGRKFYNDSKA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + E  L           +V+   G DR      ++  +   +  + +        E
Sbjct: 334 TNMEATEKALSGFE-----NPVVLLCGGLDRGFTFERLVPYLKKHVKAMVVFGQTADLLE 388

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  K     + GI       +   A+  A EM ++ D++++
Sbjct: 389 EAGK-----LAGIGRIKHAKDSSAAVSAAYEMSSEGDIVLL 424


>gi|331087235|ref|ZP_08336305.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408921|gb|EGG88382.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 459

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 114/354 (32%), Gaps = 30/354 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV +A    D    I +    L +    + L    +       +  +AV+GT GK++  
Sbjct: 72  VVVYTAAVHADNPEFIAAKEHQLPMLTRAELLGQLMTNY-----KTPIAVSGTHGKTTTT 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  I   +G +   I     +     + R+               S            
Sbjct: 127 SMISHIL-LAGDTDPTISVGGILKIIGGNIRVGHSDVFITEACEYTNSFLDFL------- 178

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                           G   N+  DH+D+ +      ++    F  LLPK+   II ++ 
Sbjct: 179 -------------PKIGIILNVEEDHMDFFKDLDDIRHS-FHRFAALLPKDGTLIINSEI 224

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           +  ++++   +                   +   + N     I    K       + GE 
Sbjct: 225 SQYEQIIAGLNCNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEH 284

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL A      +GID   + + L        RFE+ GT   G  I  DYAH    +E
Sbjct: 285 NVSNALSAIITGTLLGIDLEKIKKGLLSFTGTDRRFEYKGTLD-GVTIIDDYAHHPTEIE 343

Query: 371 MILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             L   +      I  +F      R +       + AL LAD  I+ D     E
Sbjct: 344 ATLSAAQHYPHREIWCIFQPHTYTRTKAFFHEFAQ-ALTLADHVILADIYAARE 396


>gi|152967440|ref|YP_001363224.1| FolC bifunctional protein [Kineococcus radiotolerans SRS30216]
 gi|151361957|gb|ABS04960.1| FolC bifunctional protein [Kineococcus radiotolerans SRS30216]
          Length = 526

 Score = 53.4 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + T+     + VD AH     + +   +    T  R++ V    GD+D     +
Sbjct: 377 PGRLEVLRTSPL---VLVDAAHNPAGAQALADAVAEAFTLSRLVGVVAVMGDKDVEG--V 431

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEK---IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           +  +   LA++ +    +PR  +P +   I  ++  G           EAI TA+++   
Sbjct: 432 LSALEPVLAEVVVTRSSSPRGLEPAELAEIAEDVF-GEDRVHLVERLDEAIATAVDLAES 490

Query: 459 Q 459
            
Sbjct: 491 D 491


>gi|256061487|ref|ZP_05451631.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella neotomae 5K33]
 gi|261325494|ref|ZP_05964691.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella neotomae 5K33]
 gi|261301474|gb|EEY04971.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella neotomae 5K33]
          Length = 471

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 93/285 (32%), Gaps = 21/285 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +          Q +     +             +       +  D   P+PG   V NA 
Sbjct: 232 DRRIITYGSNPQAEVRFANQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNAT 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI S  +   L     V  RF   G +  G  I+ DY H    +  +LK  
Sbjct: 292 AAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTG-SWNGVEIFDDYGHHPVEIRAVLKAA 350

Query: 377 RT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------ 425
           R       GR++ +      R      +  + A     AD  IV       E+P      
Sbjct: 351 REATSQAGGRVVAIV--QPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           E++ + I              EA+      +    D +V  G G+
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGN 453


>gi|218551527|ref|YP_002385319.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
 gi|218359069|emb|CAQ91730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
 gi|324112144|gb|EGC06122.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           fergusonii B253]
 gi|325499791|gb|EGC97650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia fergusonii
           ECD227]
          Length = 457

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMTTWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|212709986|ref|ZP_03318114.1| hypothetical protein PROVALCAL_01037 [Providencia alcalifaciens DSM
           30120]
 gi|212687395|gb|EEB46923.1| hypothetical protein PROVALCAL_01037 [Providencia alcalifaciens DSM
           30120]
          Length = 447

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 108/377 (28%), Gaps = 51/377 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ A  +  I Q  G    F IG        +     +    I   
Sbjct: 89  PERWVLAVAGTHGKTTTAGMLAWILQDCGYEPGFLIGGVPGNFDVSSQIGKSPFFVIEAD 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +       +    V                         NL  DH D  +  +A      
Sbjct: 149 EYDCAFFDKRSKFV---------------HYSPKTLILNNLEFDHADIFENLEAIQ---- 189

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P+        +   +K+  N GC                       Q  
Sbjct: 190 -KQFHHLVRIVPSSGKIFMPSNDSNLKQVMNMGCWSEQELVGENGEWHAVKLNHDGSQFD 248

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               + K  +  +   G   + N L+A      +G+ +      L+K      R E  G 
Sbjct: 249 VYYQQEKVGEVNWSQVGNHNIQNGLMAIAAAHHVGVPAKEACLALDKFINARRRLELRGV 308

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------ 403
            +    +Y D+AH   ++   L+ +R+   G  RII V        +     MG      
Sbjct: 309 ENE-VSVYDDFAHHPTAILATLEALRSKVGGTSRIIAVLEP-----RSNTMKMGISKNDI 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQ 459
             AL  AD   +         P  I     EI             I+A+    IE     
Sbjct: 363 APALGRADEVFLFQ-------PANIPWMVTEIAEHCVQPARWHADIDALANMVIETAQPG 415

Query: 460 DVLVVAGKG-----HET 471
           D ++V   G     HE 
Sbjct: 416 DHILVMSNGGFGGIHEK 432


>gi|187477731|ref|YP_785755.1| cyanophycin synthetase [Bordetella avium 197N]
 gi|115422317|emb|CAJ48841.1| cyanophycin synthetase [Bordetella avium 197N]
          Length = 870

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD----- 418
           H ++ L  +   ++   + R I V+  G DR        G++   L D+ ++ DD     
Sbjct: 742 HNASGLRALSAAVQRFPAKRRIAVYSGGMDRRDADLIEQGRLLGQLFDLVVLYDDATVKS 801

Query: 419 -NPRSEDPEKIRAEIIHGIPGF--IEKGNRIEAIRTAIEMLNKQDVLVV 464
             P  +    +R  +    P    +E+ +   AI   +      D +++
Sbjct: 802 KRPAGQARALLRQGLTQSGPAVQIVEEADHARAIEHVLAAAASDDFILL 850


>gi|194433904|ref|ZP_03066177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1012]
 gi|194417885|gb|EDX33981.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1012]
 gi|332083669|gb|EGI88887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 457

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|157693382|ref|YP_001487844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
 gi|167017279|sp|A8FGB7|MURC_BACP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157682140|gb|ABV63284.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 432

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 117/409 (28%), Gaps = 63/409 (15%)

Query: 71  IVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+          +    P++      KFL  +            +A+TG  GK+S
Sbjct: 64  VIAGNAFPDTHPEIERALSEGIPVIR---YHKFLGEYMDSFTN------VAITGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG  S +     +            +   +  S    +  + 
Sbjct: 115 TTGLLAHVMQSAKPTSYLIGDGSGMGKENSEY-----FVFEACEYRRHFLSYHPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY       F+A        L  +   I   
Sbjct: 169 ---------------------TNIDFDHPDYFSDIDDVFDAFQ---NMALQVKKAIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD +   + K              +  F     V                   F  P  G
Sbjct: 205 DDEH---LPKIQAKVPVVYYGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V N+L    LC    ID  L+   L     V  RF      ++   +  DYAH    
Sbjct: 262 NHNVLNSLAVIALCHYESIDVELIKGALTTFGGVKRRFNEKVVGAQ--VLIDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +E+ ++  R     R IV         R Q         +L  AD   + D         
Sbjct: 320 IEVTIEAARQKYPDREIVAVFQPHTFTRTQQFLSEFAD-SLKKADYVYLCD--------- 369

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            I       I   +   +  E I  A  +  +   ++   K H+   ++
Sbjct: 370 -IFGSARENIGK-LSIEDLREKIPQAQLIAEEDTSVL---KAHKDGILI 413


>gi|304383669|ref|ZP_07366128.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella marshii DSM
           16973]
 gi|304335193|gb|EFM01464.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella marshii DSM
           16973]
          Length = 458

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 120/365 (32%), Gaps = 45/365 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L V GT GK++ ++    I  +S +          IS     N + +    Y+    
Sbjct: 112 HKGLCVAGTHGKTTTSTMCAHIMHQSHVDCNAF--LGGISKDYGTNYILSDDSDYVVIEA 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                                      ++      T+   DH+D + T++AY  +     
Sbjct: 170 DEYDRSFHW------------------LRPWMSVITSTDADHLDIYGTREAYLESFRHYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +    +  I +         MK     G R+   G      H K +   + +      
Sbjct: 212 TLIREGGALIIKHGL------AMKPDVKEGVRIYEYGRDEGDFHAKNIRIANGEITFDFV 265

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++ +     LP    + N + A  +    G  +  +   ++  H V  RF+F    +
Sbjct: 266 SPVENVENVEMGLPIPINIENGVAAMAMAQLNGCTADELRYGMKTYHGVERRFDF-KIKT 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLAD 411
               +  DYAH    +   +K++R +  GR I          R +       + AL L D
Sbjct: 325 DHCVLLSDYAHHPKEIYQSIKSMRELYEGRRITAIFQPHLYSRTRDFYQEFAE-ALSLLD 383

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ--DVLV 463
             I+ D  P  E P      + I   +  G+   + K          + ++ ++  DVL+
Sbjct: 384 EVILCDIYPARELPIEGVTSQLIYDCLKPGVEKRMIKT------EEVLNVVREKDFDVLM 437

Query: 464 VAGKG 468
           + G G
Sbjct: 438 ILGAG 442


>gi|302876612|ref|YP_003845245.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
 gi|307687286|ref|ZP_07629732.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulovorans
           743B]
 gi|302579469|gb|ADL53481.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
          Length = 461

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 108/326 (33%), Gaps = 37/326 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTR--------KFLSLFASRLYGKHPENILAVTGTS 124
           +S   S+  ++A I  + P LV  N R        +FL            ++ +AV+GT 
Sbjct: 68  ISEDVSVIVYTAAIAKDNPELVSANNRNLPMFTRAEFLGEIMKDY-----KHNIAVSGTH 122

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  I    G     I    ++       R                       
Sbjct: 123 GKTTTTSMVSHIL-LKGEKDPTILVGGSLDIINGYVRTGKSDYFLTEACEYK-------- 173

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                 G   N+  DH+DY++       A  + F  L+P++   
Sbjct: 174 ------------GSFLSFYPTIGIILNIDADHLDYYKDIDEIEEA-FQKFAYLIPRDGYL 220

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  +D  +  V K ++                ++      H    +      + F    
Sbjct: 221 IVNNEDERAVNVAKNSNCNTITFGIDNGDIIAKNVTFNSLGHGSFDM-FYKGCEYFHVTL 279

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V N+L A    IA GI+   +   +E       RFEF G       +  DYAH
Sbjct: 280 KVPGRHNVLNSLSAMAAAIASGIEPNHIKAGIESFGGTHRRFEFKG-TVDDITVIDDYAH 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGC 390
               ++  L+  + ++  R+I VF  
Sbjct: 339 HPTEIKATLEACKNVSHNRLICVFQP 364


>gi|196039222|ref|ZP_03106528.1| bifunctional protein FolC [Bacillus cereus NVH0597-99]
 gi|196029849|gb|EDX68450.1| bifunctional protein FolC [Bacillus cereus NVH0597-99]
          Length = 433

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 109/386 (28%), Gaps = 45/386 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T +     D+                 ++    P I    D  + +V+++        
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQKVAKENRAN 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L           K+      +   T      +   +           AL    +      
Sbjct: 221 LYEMGNHFTALHKQSSENGEQFDFTCPFASFEDVRIAMKGSHQVGNAALALMAVMYVKTY 280

Query: 328 ----DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +     GRFE +        I +D AH    +E ++K + +    +
Sbjct: 281 LSFLIEEEEIRTGLQEAYWVGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVESHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FI 440
            ++V F   GD+       M      +AD  I T     + D      E+         +
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEFIFTT---FAFDRAISAGELASYAKKESKL 391

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              N  EAI T +EM+ + DV ++ G
Sbjct: 392 VFENWKEAIDTKVEMIGENDVFIITG 417


>gi|62180937|ref|YP_217354.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128570|gb|AAX66273.1| multifunctional folylpolyglutamate synthase; dihydrofolate
           synthase, also has formylTHF polyglutamate synthase
           activity [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715417|gb|EFZ06988.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 422

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 116/391 (29%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERISQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPT 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V            V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SRLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IASTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +  +A + AI+    +D ++V G
Sbjct: 376 N----VYDSVAQAWQAAIDAAQPEDTVLVCG 402


>gi|75759955|ref|ZP_00740024.1| Folylpolyglutamate synthase / Dihydrofolate synthase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74492552|gb|EAO55699.1| Folylpolyglutamate synthase  / Dihydrofolate synthase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 442

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 88/309 (28%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 129 TEFEIITVMAICYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 187

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           + V K  H     +            + 
Sbjct: 188 TLGEIAYEKAGIIKSGVPVITGVQDEEALEVIQNVAKENHANLYELGKHFTALHKQSKED 247

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 248 GEQFDFTCPFAAFEDLQISMKGIHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLREAY 307

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 308 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQLHN-- 362

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   N  EAI T +EM+ 
Sbjct: 363 -MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESKLVFENWKEAIDTKVEMIG 417

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 418 ENDVFIITG 426


>gi|23016783|ref|ZP_00056535.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 472

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 127/414 (30%), Gaps = 50/414 (12%)

Query: 68  AEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V S+A    + D  A      P+L        L   ++          + + GTSG
Sbjct: 69  AQVLVTSAAVEDTVPDVVAARAQGAPMLTRPQLLARLFNASTLP--------IGIAGTSG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+    +  + +R G     +                           + + +      
Sbjct: 121 KSTTTGMLGWVLERCGQRPTVM-------------------------NGAVMKNFVRPDS 155

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGR--DHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              ++  G     +  +    GS  N       ++         +   RLF +   K   
Sbjct: 156 PFSSALVGAGPAFVAEVDESDGSIANYTPQIALVNNIALDHKSMDELRRLFADFTAKARI 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDF 302
           A++  D+  +  +         R  S+   G  +  + +    +    T   +       
Sbjct: 216 AVLNLDNDETAALAATLPADRLRTYSLNDTGADLRAEDITPAPDGIGFTAREKNGQAVAV 275

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              +PG   V NAL A     A G+        L +   V  R E VG +  G  +  D+
Sbjct: 276 KLLVPGRHNVANALAALAAARAAGLGLEESARALGEFSGVRRRLETVG-SRGGVTVIDDF 334

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGC--GGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AH  + +   L  +     GR++V+F     G     K   +   A  L    ++   +P
Sbjct: 335 AHNPDKIAATLATLHD-WPGRLLVMFQPHGFGPLRLMKDEFVACFAGKLGPDDVLIMPDP 393

Query: 421 --------RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   RS   + I   +       +    R       ++M    D +V+ G
Sbjct: 394 VYFGGTVDRSVTSDHIAEAVTARGHKALAIPERAACGDALVKMARPGDRIVIMG 447


>gi|315633818|ref|ZP_07889107.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
 gi|315477068|gb|EFU67811.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
          Length = 476

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 139/440 (31%), Gaps = 56/440 (12%)

Query: 47  VAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFL 102
           +A  G K     FI        GA  +V+SSA      +  A   +  P++      + L
Sbjct: 59  LAYAGAKV----FIGHKAENITGASVVVISSAIRDDNPEVVAAKEARIPVIQRA---QML 111

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +      +G      +AV GT GK++  + V  I   +GL    +     + S   +  L
Sbjct: 112 AELMRFRHG------IAVAGTHGKTTTTAMVSMIYAEAGLDPTFV-NGGLVKSAGTNAHL 164

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                                    +AS   L          +    TN+  DH+D +  
Sbjct: 165 G------------RSRYLIAEADESDASFLHLQ--------PMISIVTNIEPDHMDTYHG 204

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                      F   LP    A++ ADDA    ++ +                   ++  
Sbjct: 205 DFDEMKQTYVNFLHNLPFYGLAVLCADDADLMSLVPQVGRQVITYGFSENAD--YRIEDY 262

Query: 283 CAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   T+     +   +   +PG     NA  A  +    GI +  +L  L     
Sbjct: 263 QQTGFQGHYTVICPSGERIDVLLNVPGRHNALNATAALAVAKEEGIKNEAILAALADFQG 322

Query: 342 VPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              RF+ +G   R      +  DY H    + + ++  R     + IV+        + +
Sbjct: 323 AGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTR 382

Query: 399 R--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAI 449
                  ++     D  I+ D  P  E P      + +   I + G    +   +  + +
Sbjct: 383 DLFDDFVQVLSQ-VDALIMLDVYPAGEAPIVGADSKALCRSIRNLGKVDPVLVSDTAQ-L 440

Query: 450 RTAIEML-NKQDVLVVAGKG 468
              ++ L    D+++  G G
Sbjct: 441 GEVLDHLIQDGDLILAQGAG 460


>gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
 gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
          Length = 1024

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 140/387 (36%), Gaps = 36/387 (9%)

Query: 92   ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
            +LVV +  + +              ++ VTG++GK++  + ++     SG  S   G  +
Sbjct: 648  VLVVKSIHQAVIFMGRHARRLFTGKLVGVTGSAGKTTTVAMLKHAFNDSGHISATRGNAN 707

Query: 152  TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                 A +                     G  ++ +E +   + +  +   +      TN
Sbjct: 708  LPYGVAWNL---------------ASMESGTDYMILEIAIGRMKESAVLA-RPHVAVVTN 751

Query: 212  LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
            +G  H+++H+T +     K R+F   L     A+I  D      ++  A+     V++ G
Sbjct: 752  IGSAHLEFHKTIETIAKRKARIF-WGLVDGGIAVINRDTECFDLILHEANKVKAVVITYG 810

Query: 272  YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                   ++ +      ++V I VEG+ + F   +  +  + N L  A + IA+ +    
Sbjct: 811  EHS-ESAVRLININDKDKEVEIQVEGRIYIFGSKVLSKHHISNMLCTAAVAIALDLPIDK 869

Query: 332  VLEHLEKLHVVPGRFEFVGTNSRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVF 388
             L+ L     +PGR E       G  I V    Y     S++  ++  RT    R   + 
Sbjct: 870  TLKKLINFSPLPGRGEHFEAVIDGKTILVIDESYNANPLSMQAAIQGARTTARNRSSKLI 929

Query: 389  GCGGD-------RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
               GD        ++    ++ +I      + ++       E    ++  I       I 
Sbjct: 930  LVLGDMLQLGDQTEKLHLSLLPEILSPEIRLVVLV-----GEQMALLKGHITDHAE-VIA 983

Query: 442  KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +  +A+   I  +   DV++   KG
Sbjct: 984  VDSVEDALEPLIFGIRANDVVM--AKG 1008


>gi|297578608|ref|ZP_06940536.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           RC385]
 gi|297536202|gb|EFH75035.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           RC385]
          Length = 421

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 104/365 (28%), Gaps = 16/365 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +           + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINGQDLADEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    +S+     G    L       + ++       GR             
Sbjct: 106 TQAFAHIEQERGDISLSLFEFGTLAALYLFEQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +         +   +   F         +     A  L        A+   ++       
Sbjct: 226 QFSYEKTSATTWNWRSGRFELTDLPIPSLPLPNAATALMALGCSGLAISDINIVDGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   S    I +D AH  +S   +++ +      R I +VFG   D+D      +
Sbjct: 286 QLAGRMQVISHQPTIVLDVAHNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD------I 339

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
               ++L+           S       A++   +P    +  N + A   A+     QDV
Sbjct: 340 ASTVVELSPAVTYWYPASLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDV 399

Query: 462 LVVAG 466
           +VVAG
Sbjct: 400 IVVAG 404


>gi|307944893|ref|ZP_07660230.1| UDP-N-acetylmuramate--alanine ligase [Roseibium sp. TrichSKD4]
 gi|307771817|gb|EFO31041.1| UDP-N-acetylmuramate--alanine ligase [Roseibium sp. TrichSKD4]
          Length = 471

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 84/281 (29%), Gaps = 17/281 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++   +    A  +  E +       +          V     
Sbjct: 173 LPADIAIVTNIDPEHLDHYGDFEGVKAAFRQFIENVPFYGFAVMCLDHPEVQTMVGTIED 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-----PLPGEFQVYNAL 316
                  +        +   +    +   VTI       D +      P+PG   V N  
Sbjct: 233 RRIVTYGTNLQADVRYYDVSMDGGKSIFSVTIRDRRTGEDIVLENLVLPMPGLHNVSNVT 292

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +G+    +   +     V  RF   G +  G  +Y DY H    ++ +L   
Sbjct: 293 AAIAVASQLGVKPEDIKAGIAGFGGVKRRFTHTG-SVDGVHVYDDYGHHPVEIKAVLHAA 351

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA--EI 432
           R  T G+++ V      R    + +    +     AD  IV       E P    +  ++
Sbjct: 352 RQSTKGKVVAVV--QPHRYTRLQSLFDDFSSCFNDADQVIVAPVFAAGEQPIDGASHHDL 409

Query: 433 IHGIP-----GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             G+            +  E       +    D ++  G G
Sbjct: 410 ASGLKTRGHRAVQTIEDPSELAGMIAGVAEPDDFVICLGAG 450


>gi|147678198|ref|YP_001212413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pelotomaculum
           thermopropionicum SI]
 gi|189082913|sp|A5D147|MURD_PELTS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146274295|dbj|BAF60044.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 455

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 72/438 (16%), Positives = 134/438 (30%), Gaps = 76/438 (17%)

Query: 64  IAQGAEAIVVSS------AYSLQDFSAT---------------------IRSNTPILVVD 96
           + +GA  ++  +         L+D +A                      +    P L V+
Sbjct: 27  VKKGASVVLADAGKPDYPDGELEDLTAAGVELSLGGYPGVGKESVDLVVVSPGVP-LTVE 85

Query: 97  NTRKFLSL---------FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
             R  +            A          I+AVTGT+GK++  + + +I + +G+++   
Sbjct: 86  PVRAAVREGIPVTGELELAYYFTRSP---IVAVTGTNGKTTTTTLIGEIFKDAGMNTLVG 142

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G   +      +                         +  E SS  L+       +   G
Sbjct: 143 GNIGSPLIAEVE------------------RYGPDDVIVAEVSSFQLETASTF--RPKVG 182

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH+D H T    + A              A++  DD  +  +         RV
Sbjct: 183 VVLNITPDHLDRHGTM-GNYAATKARMFANQGPGDFAVLNCDDPLAASLKA---GVRSRV 238

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +    + +      V        +    E         LPG   + NAL A     A+GI
Sbjct: 239 IFFSRRKELKEGVWVSGGMIVASLNGHREVVCRSDELGLPGAHNLENALAAVAAAKAMGI 298

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           +S  +   L +   V  R EFV        I        ++    L++      G  IV+
Sbjct: 299 ESNSLAGTLRRFKGVAHRLEFVAEVDGVRYINDSKGTNPDAAIKALESY-----GEPIVL 353

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRI 446
              G ++    R    +   + A + +V       +    I       G    +      
Sbjct: 354 IAGGKNKGSDFR-EFARKVKEKAKVLVV-----LGQSAGLIAEAARAEGFENILYADGFR 407

Query: 447 EAIRTAIEMLNKQDVLVV 464
           EA+  A  +    D++++
Sbjct: 408 EAVLLARRVARPGDIVLL 425


>gi|218707842|ref|YP_002415361.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|293402858|ref|ZP_06646955.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1412]
 gi|298378386|ref|ZP_06988270.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1302]
 gi|218434939|emb|CAR15878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291429773|gb|EFF02787.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1412]
 gi|298280720|gb|EFI22221.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1302]
          Length = 457

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|307312991|ref|ZP_07592619.1| UDP-N-acetylmuramate [Escherichia coli W]
 gi|306907159|gb|EFN37666.1| UDP-N-acetylmuramate [Escherichia coli W]
 gi|315063544|gb|ADT77871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|323380377|gb|ADX52645.1| UDP-N-acetylmuramate [Escherichia coli KO11]
          Length = 457

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LA+ GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAIAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|254414291|ref|ZP_05028058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178966|gb|EDX73963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 465

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 125/389 (32%), Gaps = 30/389 (7%)

Query: 82  FSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  +  + P+L+    R    +               + +TGT+GK++  + +  I Q 
Sbjct: 71  VSPGVPWDIPVLIEARNRGIDTIGEMELAWRYLKSSPWVGITGTNGKTTTTALIAAIFQA 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ-GVTHVSVEASSHGLDQHR 198
           +G  +   G     +       L  P       +L     Q  +  V  E SS+ ++  R
Sbjct: 131 AGFHAPACGNIGYAACELA---LAQPDKTRHGASLHEKLPQSKIDWVIAEVSSYQIESSR 187

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
              +    G +T    DH++ H+T + Y+  K  L    L +    I   DD Y +++  
Sbjct: 188 --ELAPTIGVWTTFTPDHLNRHKTLENYYTIKADL----LSRSHDQIFNGDDPYLRQLGT 241

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +        G          +       +    V       +          N L+A
Sbjct: 242 THWSKAYWTSVKGRDATPRPWVYIENGWVMVESEPIVPVDSLRMVGNH----NQQNLLMA 297

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                  GI+   ++E +     VP R E + T      I    A   ++ ++ L  + +
Sbjct: 298 VAAARLAGIEKQAIVEAITNFPGVPHRLEHIITWQGIDFINDSKATNYDAAQVGLAAVDS 357

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIP 437
                 +++   G  +       +  I    A + ++       E        +   G  
Sbjct: 358 -----PVILIAGGEAKAGDDTQWLNAIQAKAAAVLLI------GEAASAFAQRLQEVGYF 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQD--VLVV 464
            +        A+  A E+  + +  V+++
Sbjct: 407 RYEIVETMARAVPRAAELAQQDNAPVVLL 435


>gi|54310302|ref|YP_131322.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           SS9]
 gi|59798288|sp|Q6LMF7|MURC_PHOPR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46914743|emb|CAG21520.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 487

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 122/375 (32%), Gaps = 53/375 (14%)

Query: 32  EVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRS 88
              +DS   Q G  IF         GH     A     GA  +VVS+A +  +       
Sbjct: 58  NAVTDS-LTQKGAEIFF--------GH-----AAENVNGASVVVVSTAIAQDNPELVAAR 103

Query: 89  NTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I VV   R+   L+      +G      +A+ GT GK++  + + QI   +GL    
Sbjct: 104 ELRIPVV---RRAEMLAELMRYRHG------IAIAGTHGKTTTTALMTQIYFEAGLDPTF 154

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +     + S   + RL                      ++    S     H    ++ + 
Sbjct: 155 V-NGGLVKSAGTNARLG----------------CSRYLIAEADESDASFLH----LQPMV 193

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+D +             F   LP    A++  DD   +E++ R       
Sbjct: 194 SVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCVDDPVVRELLPRIGRQIIT 253

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     I      A        +     D +    +PG+    NA  A  +    G
Sbjct: 254 YGFSDDADVRIVEYGQHAHQGHFT-ILRAGKPDLNVKLNIPGKHNALNATAAVAVATEEG 312

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGR 383
           +D   ++  L +      RF+ +G    G     +  DY H  + +++ ++  R     +
Sbjct: 313 VDDDAIIRALLEFEGTGRRFDHLGEFETGNGSVMLVDDYGHHPSEVDVTIQAARAGWEKK 372

Query: 384 IIVVFGCGGDRDQGK 398
            +V+        + +
Sbjct: 373 RLVMIFQPHRYSRTR 387


>gi|311742797|ref|ZP_07716606.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
 gi|311314425|gb|EFQ84333.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
          Length = 467

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 14/171 (8%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V +AL+A    + +G D   ++  L        R + +G    G R+Y  YAH  
Sbjct: 285 PGDHYVQDALMALAAGLRLGADPHGLVAGLATYTGAHRRMQPLG-EVAGVRVYDSYAHHP 343

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +   L   R +     +VV        R +     MG      AD+ +V D     ED
Sbjct: 344 TEIRADLAAARQVAGDDRLVVAFQPHLVSRTRIFGAAMGAELSA-ADLVVVADLYLARED 402

Query: 425 P-----EKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P      ++ A+ + G+P  +     +        ++ L   D+L+  G G
Sbjct: 403 PDPQVGAELVADAVVGVPVLLGGAVADLP---ALLLDHLRPGDLLLTLGAG 450


>gi|254719461|ref|ZP_05181272.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella sp. 83/13]
 gi|265984467|ref|ZP_06097202.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. 83/13]
 gi|306839240|ref|ZP_07472057.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. NF 2653]
 gi|264663059|gb|EEZ33320.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. 83/13]
 gi|306405787|gb|EFM62049.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. NF 2653]
          Length = 471

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 94/285 (32%), Gaps = 21/285 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +          Q +   + +             +       +  D   P+PG   V NA 
Sbjct: 232 DRRIITYGSNPQAEVRFINQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNAT 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI S  +   L     V  RF   G +  G  I+ DY H    +  +LK  
Sbjct: 292 AAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTG-SWNGVEIFDDYGHHPVEIRAVLKAA 350

Query: 377 RT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------ 425
           R       GR++ +      R      +  + A     AD  IV       E+P      
Sbjct: 351 REATSQAGGRVVAIV--QPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           E++ + I              EA+      +    D +V  G G+
Sbjct: 409 EELVSRIKTAGHRDAHYATGPEALAPLVASIAQAGDFVVCLGAGN 453


>gi|228967559|ref|ZP_04128585.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228792138|gb|EEM39714.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 442

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 88/309 (28%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 129 TEFEIITVMAICYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 187

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           + V K  H     +            + 
Sbjct: 188 TLGEIAYEKAGIIKSGVPVITGVQDEEALEVIQNVAKENHANLYELDKHFTALHKQSKED 247

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 248 GEEFDFTCPFAAFEDLQISMKGIHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLREAY 307

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 308 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQLHN-- 362

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   N  EAI T +EM+ 
Sbjct: 363 -MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESKLVFENWKEAIDTKVEMIG 417

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 418 ENDVFIITG 426


>gi|222098159|ref|YP_002532216.1| udp-N-acetylmuramate--l-alanine ligase [Bacillus cereus Q1]
 gi|254765803|sp|B9J189|MURC_BACCQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221242217|gb|ACM14927.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Q1]
          Length = 436

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 99/378 (26%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R IVV        R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREIVVVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|121606308|ref|YP_983637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595277|gb|ABM38716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 503

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 121/383 (31%), Gaps = 42/383 (10%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+     L       ++ +TGT+GK++V S   Q+ +R+G S    G           
Sbjct: 108 QALADLKEDLAYAP--KVVGITGTNGKTTVTSLTGQLIERAGKSVAVAGNIGP------- 158

Query: 160 NRLTTPSPIY--LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
              T    +   L +     S+       +E SS  LD   +   +    +  N+ +DH+
Sbjct: 159 ---TLLDTLTGKLDEHARDPSAALPEFWVLELSSFQLD--GVTNFEPDVATVLNITQDHL 213

Query: 218 DYHQTQQAYFNAKMRLFEELLPK---------ESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           D+H+T  AY  AK  ++                +           +  +    +   R  
Sbjct: 214 DWHETLPAYAAAKSHVYGRSGLMLLNRNDPLVMTAVPALVKGKPGRSYLTFGGDEPKRPG 273

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG--------EFQVYNALVAAG 320
             G +        V A    + +      +    +  L               NAL A G
Sbjct: 274 DYGIETVNGMAWLVRAAEADETIKRRKAEELVLHIQRLMPLEALRIQGRHNATNALAALG 333

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L +A+G   A +L  L +    P R E V                  +       +  + 
Sbjct: 334 LAVAVGCPLAPMLHGLREYRGEPHRVESVAVLEGIEYFDDSKGTNVGATVA---ALAGLG 390

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI 440
           S R +V+   G  + Q   P+          + ++        D   IRA +       +
Sbjct: 391 SERKLVLILGGEGKGQDFSPL-ADPVARYVRVVVLI-----GRDAPLIRAALQGSRVELL 444

Query: 441 EKGNRIEAIRTAIEMLNKQDVLV 463
           +  +  EA+  A       D ++
Sbjct: 445 DAASMQEAVSLAAGQARPGDAVL 467


>gi|194335050|ref|YP_002016910.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris aestuarii
           DSM 271]
 gi|226711871|sp|B4S6Q8|MURC_PROA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194312868|gb|ACF47263.1| UDP-N-acetylmuramate/alanine ligase [Prosthecochloris aestuarii DSM
           271]
          Length = 464

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 81/285 (28%), Gaps = 13/285 (4%)

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
           +  R       + +  N                      F   +P     I   D    +
Sbjct: 165 EYDRAFLKLTPSIAVINSLEAEHADTYATLDELRDAFIDFANSVPFYGKVICCVDWPEVR 224

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            ++   +                   ++        V         DF   +PG   V+N
Sbjct: 225 RIVSGFNRRYSTYGIDETADLMARDIRIEKNETFFSVDYMRSH-LADFRIAVPGRHNVHN 283

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  + + +G+    ++  L     +  RF+   T+  G  I  DYAH  + ++  +K
Sbjct: 284 ALAAIAVGLEMGLPVERLVSGLAAFSGMRRRFQIRYTSPDGPIIVDDYAHHPSEVKAAVK 343

Query: 375 NIRTITSGRI-IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE------ 426
             +     R  I VF      R        G  AL  AD   +    P  EDP       
Sbjct: 344 AAKAGWPEREVIAVFQPHLYSRTADFAGEFG-WALSGADRVCIAGIYPAREDPRNFPGIS 402

Query: 427 -KIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++ AE     G        +  E             +++  G G
Sbjct: 403 GELVAEAARVAGASNVSFFEDGKELSAHLAGYCVPGMLMLFMGAG 447


>gi|328553585|gb|AEB24077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           amyloliquefaciens TA208]
 gi|328911621|gb|AEB63217.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 451

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 120/366 (32%), Gaps = 52/366 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +        + +TG++GK++  + V ++ +   + +   G   T++S    +   
Sbjct: 105 ELAYYITN---AKFIGITGSNGKTTTTTLVYEMLKADSIKALIAGNIGTVASEVAYHADG 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                +  E SS  L        +   G   N+   H+DYH ++
Sbjct: 162 ------------------DEWIVTELSSFQL--MGTHAFRPEIGLILNVFDAHLDYHHSR 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK +++   L  +  AI+   D     + +                    +K   
Sbjct: 202 ENYEKAKQKVYLHQLESD-TAIVNQSDETVVRLAEGGKAGTVPFSVSQELSSGAFIKDGM 260

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            +   + +    +         LPG   + N L A       G  +  + + L     V 
Sbjct: 261 LMFGDEAILPVDDIV-------LPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RP 400
            R ++V             A    +    L   +       +++   G DR  G    +P
Sbjct: 314 HRLQYVTAIQNRKFYNDSKATNILATSKALSAFKA-----PVILLAGGLDRGNGFDDLKP 368

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M  +       A++T     P+ E   K+  E+  GI       N  +A+  A  + N+
Sbjct: 369 YMDNV------KAVLTFGQTAPKIE---KLGNEL--GIQHVKRVDNVEQAVSAAFALSNE 417

Query: 459 QDVLVV 464
            DV+++
Sbjct: 418 GDVILL 423


>gi|320177642|gb|EFW52632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella boydii ATCC 9905]
          Length = 457

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDLFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|284048640|ref|YP_003398979.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952861|gb|ADB47664.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidaminococcus
           fermentans DSM 20731]
          Length = 473

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 119/366 (32%), Gaps = 39/366 (10%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             +  ASRLY  H     AVTG++GK++  + + ++     + +   G      S     
Sbjct: 112 AEAEEASRLYKGH---WCAVTGSNGKTTTTTLLGEMLATLPVKTAVAGNIGFALSK---- 164

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                    L            + V+ E SS  L+      +        N+  DH + H
Sbjct: 165 --------ELQDLD------QDSWVAAELSSFQLE--GTTSLAPDVACIVNITPDHFERH 208

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y  AK ++F    P +   +  ADD  S ++  +A     RV+    +       
Sbjct: 209 GDMAGYVAAKSKIFAFQTPDQILIL-NADDPVSSKLGDKAR---SRVIWFSTEKVLPEGG 264

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +        +    E         + G     + L A       G+ +  +   L+   
Sbjct: 265 FIEDGWFTLALDGKKERICQVSDLQIFGAHNEQDVLAACLSAHFAGVTAENMARVLKAFR 324

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            V  R E+V   +         A  ++S    L+  +       +++   G D+  G   
Sbjct: 325 GVEHRLEYVTAINGVKYYNDSKATNTDSAIKALEAFKD----GHVILLAGGHDKMTGLDD 380

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEK-GNRIEAIRTAIEMLNK 458
           +M  +     D  I+       E  ++        G+   I   G   +A+R A  +   
Sbjct: 381 LMEAVKAK-TDALIL-----LGEARQRFCEAAKKHGVQNIIMIDGTFEDAVRKAYSLAKA 434

Query: 459 QDVLVV 464
             V+++
Sbjct: 435 PQVVLL 440


>gi|225872731|ref|YP_002754188.1| UDP-N-acetylmuramate--alanine ligase [Acidobacterium capsulatum
           ATCC 51196]
 gi|254763733|sp|C1F455|MURC_ACIC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225793538|gb|ACO33628.1| UDP-N-acetylmuramate--alanine ligase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 458

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 94/276 (34%), Gaps = 14/276 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  I    TNL R+H+D ++      +A +     +    +      D+     ++ R  
Sbjct: 171 LSPILTVVTNLDREHMDCYRDMADVEDAFLEFMNRVPFYGANVA-CIDNPQLAALLPRVR 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  +       + +         +    S +     F   +PG   V NA  A  +
Sbjct: 230 RRVFTYGTSLGADFVVRMLPPAPEVRSRFEIASAQSVLGPFDLHVPGIHNVLNAAAAVAI 289

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            + + +    +++ L+    V  RF+  G    G  I  DY H    +   L+  R    
Sbjct: 290 AVQLDLKEQAIVQGLKSFRGVDRRFQLKGV-VDGITIIDDYGHHPTEIRATLRAARDCGY 348

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV--TDDNPRSEDP------EKIRAEII 433
             I V+F     R    R ++ +     AD + V   D    SE P        +   I 
Sbjct: 349 ANIHVLF--QPHRYSRTRDLLDEFVTSFADASTVEMLDIYAASEAPLPGITSAALVQSI- 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            G PG     +  EA+   ++     D+++  G G+
Sbjct: 406 -GQPGVRYAASTEEAVTAILDRAAPGDLILTLGAGN 440


>gi|90413041|ref|ZP_01221039.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
 gi|90326056|gb|EAS42495.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
          Length = 486

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 123/375 (32%), Gaps = 53/375 (14%)

Query: 32  EVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRS 88
              +DS   + G  IF         GH     A     GA  +VVS+A +  +       
Sbjct: 57  NAVTDS-LTRKGAEIFF--------GH-----AAENVNGASVVVVSTAIAQDNPELVAAR 102

Query: 89  NTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
              I VV   R+   L+      +G      +A+ GT GK++  + + QI   +GL    
Sbjct: 103 ELRIPVV---RRAEMLAELMRYRHG------IAIAGTHGKTTTTALMTQIYFEAGLDPTF 153

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
           +     + S   + RL                      ++    S     H    ++ + 
Sbjct: 154 V-NGGLVKSAGTNARLG----------------CSRYLIAEADESDASFLH----LQPMV 192

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+D +             F   LP    A++  DD   +E++ R       
Sbjct: 193 SVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCVDDPVVRELLPRIGRQIIT 252

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                     I   K    H      +     D +    +PG+    NA  A  +    G
Sbjct: 253 YGFSDDADVRIVEYK-QYAHQGHFTIVRAGKPDLNVKLNIPGKHNALNATAAVAVATEEG 311

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGR 383
           +D   ++  L +      RF+ +G    G     +  DY H  + +++ ++  R     +
Sbjct: 312 VDDDAIIRALLEFEGTGRRFDHLGEFDTGNGSVMLVDDYGHHPSEVDVTIQAARAGWEKK 371

Query: 384 IIVVFGCGGDRDQGK 398
            +V+        + +
Sbjct: 372 RLVMIFQPHRYSRTR 386


>gi|16132055|ref|NP_418654.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89110952|ref|AP_004732.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083675|ref|YP_001732995.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238903337|ref|YP_002929133.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|3219995|sp|P37773|MPL_ECOLI RecName: Full=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase; AltName: Full=Murein peptide
           ligase
 gi|537075|gb|AAA97130.1| ORF_o457 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790680|gb|AAC77190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|85676983|dbj|BAE78233.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169891510|gb|ACB05217.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863751|gb|ACR65749.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450944|gb|ACX41366.1| UDP-N-acetylmuramate [Escherichia coli DH1]
 gi|315138786|dbj|BAJ45945.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli DH1]
          Length = 457

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 102/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F     L       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSAHLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|149189276|ref|ZP_01867562.1| folylpolyglutamate synthase [Vibrio shilonii AK1]
 gi|148836835|gb|EDL53786.1| folylpolyglutamate synthase [Vibrio shilonii AK1]
          Length = 426

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 110/378 (29%), Gaps = 40/378 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +     +     L 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRVNGS----DLP 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                 +   +  +  E S    +   L  ++    +   +    +       A      
Sbjct: 102 DESHTRAFDYIEKLRGEVSLSFFEYATLAALRQFQENKVEVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 162 DVSVITSLAVDHVDWLGDDINVIGFEKAGIFRTGKPAICGQPKPPATVPAHADDIKANFY 221

Query: 288 KQ----------QVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           +           + T + +   F     P+P    +        L  A    S + + + 
Sbjct: 222 QSGIQFDYKLTSEHTWAWQHGTFMLEDLPVPVLPLMNANTALMALGAAELDISDVNIVNG 281

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRD 395
            K   +PGR +     +      +D AH  +S E ++  +      R   VV G   D+D
Sbjct: 282 LKQARLPGRMQ---MLTGSPVTILDVAHNPHSAEYLVAQLSKHYPNRRFKVVIGMLHDKD 338

Query: 396 QGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
                   ++         +T+D        PR+   +++   ++ G     +  N + A
Sbjct: 339 IE---ETIRVLNP------LTEDWYPASLSGPRAASADELCQHLMSG-NALKQYDNPVSA 388

Query: 449 IRTAIEMLNKQDVLVVAG 466
            + A       D+++V G
Sbjct: 389 YQAAKSEAKSDDMILVVG 406


>gi|24115458|ref|NP_709968.1| putative ligase [Shigella flexneri 2a str. 301]
 gi|30065479|ref|NP_839650.1| putative ligase [Shigella flexneri 2a str. 2457T]
 gi|157163707|ref|YP_001461025.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli HS]
 gi|24054776|gb|AAN45675.1| putative ligase [Shigella flexneri 2a str. 301]
 gi|30043743|gb|AAP19462.1| putative ligase [Shigella flexneri 2a str. 2457T]
 gi|157069387|gb|ABV08642.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli HS]
 gi|281603567|gb|ADA76551.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Shigella flexneri 2002017]
 gi|313646431|gb|EFS10893.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
 gi|323171673|gb|EFZ57319.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|332763144|gb|EGJ93387.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2930-71]
 gi|333009274|gb|EGK28730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-218]
 gi|333011919|gb|EGK31304.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-304]
 gi|333012112|gb|EGK31494.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 457

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|302385555|ref|YP_003821377.1| FolC bifunctional protein [Clostridium saccharolyticum WM1]
 gi|302196183|gb|ADL03754.1| FolC bifunctional protein [Clostridium saccharolyticum WM1]
          Length = 423

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 102/380 (26%), Gaps = 26/380 (6%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP--TSTISSFAQDNRLTTPS 166
              +     + + GT+GK S A+ +  +   +G  +           +   Q N +  P 
Sbjct: 33  WNPERKLKYIHIAGTNGKGSTAAMLASVLTEAGYKTGLYTSPYIQCFNERIQINGINIPD 92

Query: 167 --PIYLAKALSYLSSQGVT----------HVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
              I   + +     Q                +       D   L+         TN+  
Sbjct: 93  DKIIEAVEHIRGFVDQMEDKPTEFELITVIAFLYFYQCQCDIVVLEVGMGGRLDSTNIIP 152

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
                  T     + +             A I  +        +R             + 
Sbjct: 153 VPEVAVITAIDLDHTRELGNTVEKIAGEKAGIIKNGCDVVLYQQRQSVFEVIESVCSDKS 212

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             +H      I               DF          Y     A     + I       
Sbjct: 213 ARLHPVDFNYIEIICSDLNGQCLNFEDFHDIKISLLGEYQQKNTAVALKTLEILIKKGWN 272

Query: 335 HL-------EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                     K    PGRFE +          VD AH  N +  +  NI      R I +
Sbjct: 273 FTVRGIKEGMKKAKWPGRFEVLTRKPY---FIVDGAHNPNGVRAMADNINAYFKDRKI-I 328

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGNRI 446
           F  G  +D+    +M  I    +   +V  +N R+    ++   + +       E  N  
Sbjct: 329 FLVGVLKDKDYEAMMRLIMPYGSKFIVVQPENSRALSQGELADYLRNNSNADVSEADNVE 388

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
             I+TA+ +  + +V++  G
Sbjct: 389 TGIKTALNLAREDEVIIAFG 408


>gi|241895692|ref|ZP_04782988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871059|gb|EER74810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
          Length = 444

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 62/389 (15%), Positives = 133/389 (34%), Gaps = 47/389 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y++   +A    + PI+V       L+           EN +AVTG++GK++    +  
Sbjct: 74  PYTIPILTAAEERHIPIVV----EVALAQ------KYIQENWIAVTGSNGKTTTTEMI-- 121

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                   +  +   +          + TP                   +  E SS  L 
Sbjct: 122 --------ASVLRTQTGDGHVLVAGNIGTPVS------EVAPKMLKDDVLVTELSSFQLT 167

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              +   K      TN+   H+++H T++ Y  AKM + +     +   + Y D+   + 
Sbjct: 168 --GMPAPKPHIAVLTNIFASHLNFHGTRENYVAAKMNITKHQTAADFFVVNY-DNEEWRH 224

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + ++ +         G      +LK     + ++ +  + E         +PG   + NA
Sbjct: 225 LAEQTNATIVPFSRKGVSEAGAYLKNGSLYYKEEFIIAADELG-------VPGTHNIENA 277

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +   + +++  +   L     V  R +F+G            A    + EM L  
Sbjct: 278 LAAIAVGKLMRVETTNIAGALRSFSGVEHRLQFIGNFYDRPVYNDSKATDIEATEMALSG 337

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
                    +++   G DR   +  ++  +   +  + +        E  EK+ A     
Sbjct: 338 F-----NVPVILLAGGLDRGDDQMRLLSAMKQHVKGLIVF------GETAEKLAAVGKKI 386

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +   +   A++ A E+    +V+++
Sbjct: 387 GIPVLYAKDAPSAVKPAFELSEAGEVILL 415


>gi|164688449|ref|ZP_02212477.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM
           16795]
 gi|164602862|gb|EDQ96327.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 12/227 (5%)

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D      +K              +   I+        N     + ++ K   F  P  
Sbjct: 16  NGDDDMLATLKGKDLKYNLKTFGFEKDNTIYCVDFEMNDNDTIFNVMIDNKIEKFYIPTV 75

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  +YNA+ A  +   + +    +   LE L +   R + +  ++      V Y  + +
Sbjct: 76  GEHNIYNAMAAILVGKTLNLTLDEIRNGLETLEITKSRMDVIKNDNYTVIDSV-YNASVD 134

Query: 368 SLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           S+   LK +    + R+ ++      G   +     +GK A + AD+ I        +D 
Sbjct: 135 SMRAALKVLNRYKTRRVAILGDIFEMGSFAEEGHKQVGKDASENADVIIAI-----GKDA 189

Query: 426 EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVV-AGKG 468
           E I  E +              + EA+     +L K D ++V A +G
Sbjct: 190 EFISKEALENNMNKDNVHHFATKEEAMENFKNILQKGDTILVKASRG 236


>gi|170728148|ref|YP_001762174.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
 gi|169813495|gb|ACA88079.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
          Length = 461

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 114/367 (31%), Gaps = 28/367 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNR 161
              A  +       +LAV+GT GK+S +S +  I +  G    F IG        +    
Sbjct: 97  QFLAEHILKN--RWVLAVSGTHGKTSTSSMLAWILEYCGYEPGFLIGGVPQNFGVSARTG 154

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
            +    +   +  S    +    V                 +       NL  DH D   
Sbjct: 155 NSPFFVVEADEYDSAFFDKRSKFV---------------HYQPRTLVINNLEFDHADIFD 199

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
             +A       +   +  +          A ++ +     +      S    G+     K
Sbjct: 200 DLKAIQRQFNHVIRTVPGEGKIIWPKESQAVTEVIKMGCWSEQEFYSSSADTGQAGWSTK 259

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + A    Q              + L G+  V NA +A      +G+     +E L K   
Sbjct: 260 LIADDGHQFELFFDGVSQGTLDWQLIGQHNVENATMAVAAARHVGVKPQAAIEALVKFQP 319

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGD---RDQG 397
              R E +G    G  +Y D+AH   ++   L+  R  +  G+I ++     +       
Sbjct: 320 PKRRMELIG-TVNGIEVYDDFAHHPTAIATTLQGTRAKVGEGKITIILEPRSNTMKSGVH 378

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           K  + G +A  LA+ A +   +    D      +    +    E     E + T  E   
Sbjct: 379 KDTLAGSMA--LANEAYLYQADNIDWDLASAMNKAELPVKVLYEID---EIVETVAEKAE 433

Query: 458 KQDVLVV 464
             D +VV
Sbjct: 434 SGDTIVV 440


>gi|15804823|ref|NP_290864.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 EDL933]
 gi|26251138|ref|NP_757178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli CFT073]
 gi|91213786|ref|YP_543772.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UTI89]
 gi|110644594|ref|YP_672324.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 536]
 gi|117626579|ref|YP_859902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli APEC O1]
 gi|157156216|ref|YP_001465741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli E24377A]
 gi|168751077|ref|ZP_02776099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4113]
 gi|168754809|ref|ZP_02779816.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4401]
 gi|168766518|ref|ZP_02791525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4486]
 gi|168774050|ref|ZP_02799057.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4196]
 gi|168782754|ref|ZP_02807761.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4076]
 gi|168784877|ref|ZP_02809884.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC869]
 gi|168797807|ref|ZP_02822814.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC508]
 gi|191167263|ref|ZP_03029081.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B7A]
 gi|191170715|ref|ZP_03032267.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli F11]
 gi|193063713|ref|ZP_03044801.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E22]
 gi|194426549|ref|ZP_03059103.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B171]
 gi|194437852|ref|ZP_03069947.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 101-1]
 gi|195937258|ref|ZP_03082640.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 str. EC4024]
 gi|208808759|ref|ZP_03251096.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4206]
 gi|208812704|ref|ZP_03254033.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4045]
 gi|208820356|ref|ZP_03260676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4042]
 gi|209400781|ref|YP_002273775.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4115]
 gi|215489578|ref|YP_002332009.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218556783|ref|YP_002389697.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|218692621|ref|YP_002400833.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ED1a]
 gi|218702934|ref|YP_002410563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI39]
 gi|227886714|ref|ZP_04004519.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 83972]
 gi|237703908|ref|ZP_04534389.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|253775142|ref|YP_003037973.1| UDP-N-acetylmuramate [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037252|ref|ZP_04871329.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           sp. 1_1_43]
 gi|254164161|ref|YP_003047271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B str. REL606]
 gi|254796252|ref|YP_003081089.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019885|ref|ZP_05433750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Shigella sp. D9]
 gi|256025171|ref|ZP_05439036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia sp. 4_1_40B]
 gi|260847066|ref|YP_003224844.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260858385|ref|YP_003232276.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O26:H11
           str. 11368]
 gi|260870988|ref|YP_003237390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261225353|ref|ZP_05939634.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255394|ref|ZP_05947927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285646|ref|YP_003502464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293417735|ref|ZP_06660357.1| ligase [Escherichia coli B185]
 gi|293476535|ref|ZP_06664943.1| ligase [Escherichia coli B088]
 gi|297520974|ref|ZP_06939360.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli OP50]
 gi|301028065|ref|ZP_07191346.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 196-1]
 gi|306815549|ref|ZP_07449698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli NC101]
 gi|331650364|ref|ZP_08351436.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M605]
 gi|331656068|ref|ZP_08357056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M718]
 gi|331660813|ref|ZP_08361745.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA206]
 gi|331665902|ref|ZP_08366796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA143]
 gi|331681256|ref|ZP_08381893.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H299]
 gi|332281024|ref|ZP_08393437.1| conserved hypothetical protein [Shigella sp. D9]
 gi|12519234|gb|AAG59430.1|AE005655_9 putative ligase [Escherichia coli O157:H7 str. EDL933]
 gi|26111570|gb|AAN83752.1|AE016771_263 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli CFT073]
 gi|91075360|gb|ABE10241.1| putative ligase [Escherichia coli UTI89]
 gi|110346186|gb|ABG72423.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 536]
 gi|115515703|gb|ABJ03778.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli APEC O1]
 gi|157078246|gb|ABV17954.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E24377A]
 gi|187770281|gb|EDU34125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4196]
 gi|188014851|gb|EDU52973.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4113]
 gi|188999815|gb|EDU68801.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4076]
 gi|189357847|gb|EDU76266.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4401]
 gi|189364179|gb|EDU82598.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4486]
 gi|189374729|gb|EDU93145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC869]
 gi|189379452|gb|EDU97868.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC508]
 gi|190902716|gb|EDV62447.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B7A]
 gi|190908939|gb|EDV68526.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli F11]
 gi|192930700|gb|EDV83306.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E22]
 gi|194415288|gb|EDX31556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B171]
 gi|194423348|gb|EDX39340.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 101-1]
 gi|208728560|gb|EDZ78161.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4206]
 gi|208733981|gb|EDZ82668.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4045]
 gi|208740479|gb|EDZ88161.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4042]
 gi|209162181|gb|ACI39614.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4115]
 gi|209749718|gb|ACI73166.1| putative ligase [Escherichia coli]
 gi|209749720|gb|ACI73167.1| putative ligase [Escherichia coli]
 gi|209749722|gb|ACI73168.1| putative ligase [Escherichia coli]
 gi|209749724|gb|ACI73169.1| putative ligase [Escherichia coli]
 gi|209749726|gb|ACI73170.1| putative ligase [Escherichia coli]
 gi|215267650|emb|CAS12107.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218363552|emb|CAR01207.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|218372920|emb|CAR20802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI39]
 gi|218430185|emb|CAR11043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ED1a]
 gi|222036006|emb|CAP78751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminop
           [Escherichia coli LF82]
 gi|226840358|gb|EEH72360.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           sp. 1_1_43]
 gi|226901820|gb|EEH88079.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836287|gb|EEJ46753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 83972]
 gi|242379755|emb|CAQ34582.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli BL21(DE3)]
 gi|253326186|gb|ACT30788.1| UDP-N-acetylmuramate [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976064|gb|ACT41735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B str. REL606]
 gi|253980220|gb|ACT45890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli BL21(DE3)]
 gi|254595652|gb|ACT75013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257757034|dbj|BAI28536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257762213|dbj|BAI33710.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257767344|dbj|BAI38839.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281181332|dbj|BAI57662.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE15]
 gi|290765519|gb|ADD59480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320988|gb|EFE60430.1| ligase [Escherichia coli B088]
 gi|291430453|gb|EFF03451.1| ligase [Escherichia coli B185]
 gi|294492555|gb|ADE91311.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IHE3034]
 gi|299878838|gb|EFI87049.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 196-1]
 gi|305851211|gb|EFM51666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli NC101]
 gi|307556405|gb|ADN49180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ABU 83972]
 gi|307629309|gb|ADN73613.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UM146]
 gi|312948886|gb|ADR29713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|320190635|gb|EFW65285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. EC1212]
 gi|320200638|gb|EFW75224.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli EC4100B]
 gi|320638992|gb|EFX08638.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. G5101]
 gi|320644361|gb|EFX13426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H- str. 493-89]
 gi|320649679|gb|EFX18203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H- str. H 2687]
 gi|320655075|gb|EFX23036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660582|gb|EFX28043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665851|gb|EFX32888.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. LSU-61]
 gi|323157567|gb|EFZ43676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli EPECa14]
 gi|323162030|gb|EFZ47902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E128010]
 gi|323176148|gb|EFZ61740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323181966|gb|EFZ67377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1357]
 gi|323189886|gb|EFZ75164.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|323935358|gb|EGB31706.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E1520]
 gi|323940153|gb|EGB36347.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E482]
 gi|323950696|gb|EGB46574.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H252]
 gi|323955522|gb|EGB51286.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H263]
 gi|323960276|gb|EGB55917.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H489]
 gi|323970511|gb|EGB65770.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli TA007]
 gi|323975422|gb|EGB70523.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli TW10509]
 gi|326345435|gb|EGD69178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. 1125]
 gi|330908580|gb|EGH37099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli AA86]
 gi|331040758|gb|EGI12916.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M605]
 gi|331046422|gb|EGI18512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M718]
 gi|331051855|gb|EGI23894.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA206]
 gi|331056953|gb|EGI28947.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA143]
 gi|331081477|gb|EGI52638.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H299]
 gi|332103376|gb|EGJ06722.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 457

 Score = 53.4 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|319764374|ref|YP_004128311.1| udp-n-acetylmuramoylalanine/d-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|330826593|ref|YP_004389896.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
 gi|317118935|gb|ADV01424.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|329311965|gb|AEB86380.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
          Length = 593

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 139/428 (32%), Gaps = 55/428 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNT-PILVVDNTRK------------FLSLFASRLYGKH 113
           GA  +   +  ++        ++  P+++  + R+             L       +G  
Sbjct: 149 GAALVEGHALDAVYRSPGLAPTDVAPVVIAASARQIIVGGELSLYSEALHEL-RTRHGYA 207

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  +LA+TGT+GK++V S    +   +G S    G            RL       +   
Sbjct: 208 PA-VLAITGTNGKTTVTSLTGLLVDCAGKSVAVAGNIGPTLLDTLGERLDAGQLPEV--- 263

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                        +E SS  LD     G +  A +  N+ +DH+D+H + QAY  AK R+
Sbjct: 264 -----------WVLELSSFQLD--GAQGFEPTAATVLNVTQDHLDWHGSMQAYAQAKARI 310

Query: 234 FE----ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
           F      +L ++ P ++       +  +++               +              
Sbjct: 311 FGAAGLMILNRDDPLVMDMLPPPVRVKLQKPQLRAHVTFGGDMPQRPGDFGIEVVSGMAW 370

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL------------E 337
            V      +          E  V   + A  L I    ++   L  L             
Sbjct: 371 LVRAHDADETARRGKVQEAELHVQRLMPADALRIRGRHNALNALAALALAQAAGCALAPM 430

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYA--HTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
              +   R E       G    V+Y       ++   +  +  + + R +V+   G  + 
Sbjct: 431 LYGLREYRGEPHRVEPVGMVREVEYFDDSKGTNVGATVAALTGLGADRRLVLILGGDGKG 490

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           Q   P+   +A   A  A++        D  +IRA +       ++     EA++ A + 
Sbjct: 491 QDFSPLAAPVA-RYARAAVLI-----GRDAPQIRAALEGCGVPLLDAATLPEAVQLASQR 544

Query: 456 LNKQDVLV 463
            +  D ++
Sbjct: 545 AHAGDAVL 552


>gi|325141934|gb|EGC64374.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis 961-5945]
 gi|325197913|gb|ADY93369.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis G2136]
          Length = 424

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 126/393 (32%), Gaps = 37/393 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +    
Sbjct: 28  SEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAIN 87

Query: 163 TTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
             P                   I L        +     +  +     L+     RLD +
Sbjct: 88  AEPVSDDTIIASFERIEAARSEISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGRLDAV 147

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G    +    +D+          ++   +  + +     I   +   + ++  A  
Sbjct: 148 NAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPESLLSHAEA 206

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G ++L V  +    H  +    + + +   S +        P P     Y    AA   
Sbjct: 207 IGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDDPARNRNALPFPALRGTYQLSNAACTL 265

Query: 323 IAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +   +A +   +        L   PGRF+ +          +D  H  ++   + +++
Sbjct: 266 TVLECLNAKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRRSL 322

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
             +    +   VF    D+D      + +I  D  D   +   D PR    E ++ ++  
Sbjct: 323 INLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHE 379

Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I          EA R A     + D +VV G
Sbjct: 380 HSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|228902986|ref|ZP_04067126.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis IBL 4222]
 gi|228856662|gb|EEN01182.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis IBL 4222]
          Length = 433

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 88/309 (28%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           + V K  H     +            + 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVQDEEALEVIQNVAKENHANLYELGKHFTALHKQSKED 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 239 GEQFDFTCPFAAFEDLQISMKGIHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLREAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   N  EAI T +EM+ 
Sbjct: 354 -MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESKLVFENWKEAIDTKVEMIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 ENDVFIITG 417


>gi|208779766|ref|ZP_03247110.1| Mur ligase family, glutamate ligase domain protein [Francisella
           novicida FTG]
 gi|208744221|gb|EDZ90521.1| Mur ligase family, glutamate ligase domain protein [Francisella
           novicida FTG]
          Length = 561

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 119/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKE------------VMKRAHNAGCRVLSVGYQGKF 276
           A+ +        +    I   D    +            V +       +          
Sbjct: 283 AEAKSIVFRALGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYAC 342

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I               + +   +         +  + NA++A  L   +GI   ++ + L
Sbjct: 343 IVEDGNFVWVEANSKKVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   +     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|330999324|ref|ZP_08323041.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Parasutterella excrementihominis YIT 11859]
 gi|329575182|gb|EGG56733.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Parasutterella excrementihominis YIT 11859]
          Length = 440

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 133/418 (31%), Gaps = 51/418 (12%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            + P+ +  GA+  ++ +A S  +       N  +       ++L    + L G+H   +
Sbjct: 40  DYDPEQLDAGADLYIIGNAISRGNPLLEEILNRGLPYTSGP-QWLQE--NILNGRH---V 93

Query: 118 LAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           LAV GT GK++  S +  I +  G   SF IG      +F    RLT      +      
Sbjct: 94  LAVAGTHGKTTTTSMLAWILEDCGLNPSFLIG--GVPQNFGHSARLTESEYFVIEADEYD 151

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +                 + +    +       NL  DH D     +A    +      
Sbjct: 152 TAFFD-------------KRSKFVHYRPRTVILNNLEYDHADIFPNLEAIER-QFHHLVR 197

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     I          V+K                    +     + ++     +  
Sbjct: 198 TIPSHGKVIFNEASEALHRVLKMGLWTPAESFGTSP------VCDWRLVEHEGARLFAGG 251

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +   F   LPGE  + NA  A    +  G+ +   ++ L +   V  R E  G    G 
Sbjct: 252 KEVGRFELSLPGEHNLLNASAAVAAAVNAGVSAERAVDALSRFEGVKRRMEVKG-EVAGT 310

Query: 357 RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL------ 409
           ++  D+AH   ++E  +K +R    +GR++ V        +     +G +   L      
Sbjct: 311 KVIDDFAHHPTAIEETIKAVRSKYQTGRLLAVLEP-----RSNTMKLGTMKAQLPGSLVQ 365

Query: 410 ADIAIVTDDNPRSEDPE---KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD           + P       A +        E  +    +   +    + D ++V
Sbjct: 366 ADKVFC------YQGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQAEQGDTILV 417


>gi|224026611|ref|ZP_03644977.1| hypothetical protein BACCOPRO_03368 [Bacteroides coprophilus DSM
           18228]
 gi|224019847|gb|EEF77845.1| hypothetical protein BACCOPRO_03368 [Bacteroides coprophilus DSM
           18228]
          Length = 428

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 97/384 (25%), Gaps = 30/384 (7%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP- 165
              +       + + GT+GK S +  +  I Q +G  +        +    +     TP 
Sbjct: 38  HFRHPHQKFRTIHIAGTNGKGSCSHTLAAILQSAGYRTGLYTSPHLVDFRERIRINGTPV 97

Query: 166 ---SPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----------------HRLDGIKLIA 206
                +   K                A+S                      RLD   +I 
Sbjct: 98  PQEFVVDFVKKHRRFFEPLHPSFFELATSMAFHYFAEEQVDVAVVEVGLGGRLDCTNIIH 157

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
                +     D+ Q               ++    P +I      ++ V +        
Sbjct: 158 PDLCLITNISFDHVQFLGNTLAQIASEKAGIIKDYVPVVIGETTPETRPVFEEKAWKAHA 217

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            L    + + +   +  A       T        +              L A       G
Sbjct: 218 PLIFAEEEQLLKDARQNADGTWTYQTSDYPDLQGEL-GGYYQLKNTNTLLSAIRQLKQAG 276

Query: 327 IDSALVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
              +          +  + G             I  D  H +  +  I++ +R  T   +
Sbjct: 277 YSISEANVREGFAHVCSLTGLMGRWQKLGSNPTIVCDTGHNTGGIRYIVEQLRNQTYDTL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEK 442
            +V G   D+D      M             T  + +   P     E+    G+ G    
Sbjct: 337 HIVIGMVNDKDISGVLAMLPKEARY----YFTQASVQRALPADKVKELAASHGLKG-ESY 391

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +   A++ A     ++D + V G
Sbjct: 392 PDVATALKAAQSEATEKDFIFVGG 415


>gi|222112151|ref|YP_002554415.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Acidovorax
           ebreus TPSY]
 gi|221731595|gb|ACM34415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax ebreus
           TPSY]
          Length = 632

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 122/386 (31%), Gaps = 48/386 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L        G  P  +LA+TGT+GK++V S    + + +       G           
Sbjct: 234 QALREL-RAGQGYAPA-VLAITGTNGKTTVTSLTGLLVECADKRVAVAGNIGPTLLDTLA 291

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
             +   +   +                +E SS  LD   + G +  A +  N+ +DH+D+
Sbjct: 292 QHIDAGTLPEV--------------WVLELSSFQLD--GVQGFEPTAAAVLNITQDHLDW 335

Query: 220 HQTQQAYFNAK---MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           H + QAY  AK         ++     A + A       V  +       V   G   + 
Sbjct: 336 HGSLQAYAQAKGRIFGETGLMVLNREDAEVMALLPPPVRVKLQKPQLRAHVTFGGDMPQR 395

Query: 277 IHLKKVCAIHNK------------------QQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                +  +                     Q   + ++         + G     NAL A
Sbjct: 396 PGDFGIEVVSGMAWLVRAHEADETAKRGKAQDAELHIQRLMPADALRIRGRHNAINALAA 455

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L  A G   A +L  L +    P R E VG                 +       +  
Sbjct: 456 LALAQAAGCPLAPMLYGLREYRGEPHRVEPVGIVREVEYFDDSKGTNVGATVA---ALTG 512

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           + + R +VV   G  + Q   P+   +A   A   ++        D  +IRA +      
Sbjct: 513 LGADRRLVVILGGDGKGQDFSPLAAPVA-RYARAVVLI-----GRDAPQIRAALQGCGVP 566

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +     EA++ A +  +  D +++
Sbjct: 567 LQDAATLPEAVQLATQRAHVGDAVLL 592


>gi|188585736|ref|YP_001917281.1| FolC bifunctional protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350423|gb|ACB84693.1| FolC bifunctional protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 465

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 96/289 (33%), Gaps = 29/289 (10%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           I  I     N+  + +     ++A    +       L ++  +I       +  V++   
Sbjct: 164 ITSIGYDHINVLGNTLTKIAEEKAGIIKENIPVITGLHQDKASIEEDTQEQAFSVIEEKC 223

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                 L    +     +K   +          +E +  +   PL GE Q+ NA +A   
Sbjct: 224 QKKGSPLYASERNWNYRIKAFSSTGYCFDY-FGLEAEFINLKLPLLGESQIKNASMALCA 282

Query: 322 CIA-----IGIDSALVLEHLEKLHVVPGRFEFVG-----------TNSRGGRIYVDYAHT 365
                           +        +P R EF                +   + +D +H 
Sbjct: 283 LELLKKQGWNEIDWNDMRKGMVRVNIPARMEFWPADSGEKTITGSRAEKQPDVLLDASHN 342

Query: 366 SNSLEMILKNIRTITSGRII--VVFGCGGDRDQGKRPIMGKIALDLA---DIAIVTDD-N 419
             S++ ++  IR + + R    +VF  G  +D+     M KI  + +   D  +VT+  N
Sbjct: 343 PPSVQNLMSCIRRLDTNRKWNKIVFVTGVLQDK----PMEKIVANFSLIPDEIVVTEPQN 398

Query: 420 PRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R+     +   I   +P      + +  +A+R  I       +LV+ G
Sbjct: 399 TRALSAHCLLDYITDQLPDTNISVESDLYKAVRMGISKAGNGSLLVIFG 447


>gi|218899625|ref|YP_002448036.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus G9842]
 gi|218545377|gb|ACK97771.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus G9842]
          Length = 433

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 88/309 (28%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           + V K  H     +            + 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVQDEEALEVIQNVAKENHANLYELDKHFTALHKQSKED 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 239 GEEFDFTCPFAAFEDLQISMKGIHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLREAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   N  EAI T +EM+ 
Sbjct: 354 -MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESKLVFENWKEAIDTKVEMIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 ENDVFIITG 417


>gi|52425721|ref|YP_088858.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia
           succiniciproducens MBEL55E]
 gi|59798187|sp|Q65RY7|MURC_MANSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52307773|gb|AAU38273.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 480

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 137/416 (32%), Gaps = 46/416 (11%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA    +    A      P++      + L+      +G      +AV GT G
Sbjct: 82  ASVVVVSSAIKADNVEVVAAHEKRIPVIQRA---QMLAEIMRFRHG------IAVAGTHG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL    +     + S   +  L                      +
Sbjct: 133 KTTTTAMISMIYAQAGLDPTFV-NGGLVKSAGTNAHLG----------------CSRYLI 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S     H    ++ +    TN+  DH+D +             F   LP    ++
Sbjct: 176 AEADESDASFLH----LQPMVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPFYGLSV 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD    E++ +                 I   +           I+  G+  D L  
Sbjct: 232 MCADDPVLLELIPQVGRPVITYGFSEEADYRIENYEQTGFQGHYS-VITPAGERIDVLLN 290

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDY 362
           +PG+    NA  A  +    GI++  +L  L        RF+ +G+  R      +  DY
Sbjct: 291 VPGKHNALNATAALAVAKEEGIENEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDY 350

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNP 420
            H    + + ++  R     + IV+        + +       ++     D+ I+ D  P
Sbjct: 351 GHHPTEVNVTIQAARKGWENKRIVMIFQPHRYSRTRDLFDDFVRVLSQ-VDLLIMLDVYP 409

Query: 421 RSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E P        +   I + G    I   +  E       +L   D+++  G G+
Sbjct: 410 AGESPIAGADSRSLCRSIRNLGQVDPILVTDTAELPEIMDRVLQDGDLVLAQGAGN 465


>gi|121998869|ref|YP_001003656.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
 gi|189028995|sp|A1WYU2|MURC_HALHL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121590274|gb|ABM62854.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
          Length = 486

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 131/415 (31%), Gaps = 42/415 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QG +A+VVS+A +  +          I VV    + L+      +G      +AV GT G
Sbjct: 83  QGMDAVVVSTAVTEDNPEVQAARQQRIPVVPRA-EMLAELMRFRHG------VAVAGTHG 135

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +                         +  L     I      +   ++     
Sbjct: 136 KTTTTSLLASC--------------------LAEGELDPTFVIGGRLISAGAHARLGAGP 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A +   D   L  +K +  + TN+  DH+  +             F   LP    A+
Sbjct: 176 YLVAEADESDASFLH-LKPMMAAVTNVDADHLGTYGGDFEALRRTFIEFLHHLPFYGLAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   + +                    +   +      + ++    +G  F     
Sbjct: 235 LCIDDPEVRRLRGEIGRPVLTYGFSEDADVRVSGMEADGHRTRFRIE-EGDGAAFAVELS 293

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDY 362
           LPG   V NA  A  L   +G+D A +   L     +  RF+                DY
Sbjct: 294 LPGRHNVLNAAAAIALARELGVDVAAIQRALSSFQGIGRRFQVYPDIPLAEGAAALVDDY 353

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNP 420
           AH    LE  L+  R     R +VV        +  R +    A  L+  D  ++T+   
Sbjct: 354 AHHPRELEATLQAARAAWPERRLVVVFQPHRYSRT-RELFDDFARVLSGTDALVLTEVYA 412

Query: 421 RSE------DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             E      D   + + +   G    I   +  E       +L   DV++  G G
Sbjct: 413 AGEARLPGADGRALASAVRDRGGAQPIFAESLDEVPGLLAGLLRDDDVVLTLGAG 467


>gi|331701578|ref|YP_004398537.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128921|gb|AEB73474.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 443

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 94/294 (31%), Gaps = 33/294 (11%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +      TN+  DH DY+++     +A      +          + DD   +++  + 
Sbjct: 163 ATEPDYAIMTNIDFDHPDYYKSIDDVADAFQTFANQTKKG---IFAWGDDKRLRQLKAKV 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                                V    +     ++ +GK+  +F  PL GE  ++N+L   
Sbjct: 220 P----IYYYGLKDTDDFQAVDVKRTTSGSSFDVTYKGKNLGNFSVPLFGEHNIFNSLAVI 275

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +     +D   + + L+    V  RF        G  I  DYAH    ++  +   R  
Sbjct: 276 AVAYFEDVDLDEIRKELKTFQGVKRRFAERKIA--GMTIIDDYAHHPTEIKATIDAARQE 333

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
              + I V        +    +M   A   +LAD   +T    +PR    +    ++   
Sbjct: 334 YPSKKIAVVFQPHTFSRTI-ALMDDFAKSLNLADEVFLTSIYSSPRESHGKVSSEDLSKK 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGKGHETVHIVTNGEKKMSV 484
           I       +        ++ ++       DV++  G G      +   EK    
Sbjct: 393 ITKGGRILS--------VDNMSPLLDYDNDVVIFMGAG-----DIQKYEKSYED 433


>gi|332991938|gb|AEF01993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas sp.
           SN2]
          Length = 470

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 107/361 (29%), Gaps = 34/361 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
              +RL        + +TG++GK++V      + +  G    + G             + 
Sbjct: 96  ELFARLNNTP---TIGITGSNGKTTVTLLTTHMLKACGYEVCEAGNVGRPVLETLPESMA 152

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               +             +  + +E SS  L+      +KL A S  N+  DH+D H   
Sbjct: 153 ELETLS----------SSLDVIVLELSSFQLET--TSSLKLNAASILNISDDHLDRHGDM 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           Q Y  AK R+F         A+++  D         A N    +             +  
Sbjct: 201 QQYTAAKQRIFSH----CHTAVVWRGDKQVTP----ASNCENTITYGLDMSDTGFGLREG 252

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
            I    +  ++        +  +           A    +            +      P
Sbjct: 253 VITINGEALLNTADIRLAGMHNVLNVMASLALCQAFSTSLNKPALLNTAARAVASFTSAP 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R   +   +    I    A    +    ++ +   T+G+II++   G  +      +  
Sbjct: 313 HRCVEIANINGVKWIDDSKATNVGATIAAIQGLAPTTNGKIILI-AGGDSKGADLSALKP 371

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   + ++  +  D   +E    +  +            +  +A+  A       D+++
Sbjct: 372 ALDESVGEVIALGKD---AEKFSAVFRD-------TTIVASMEKAVLAANLRAGNGDIVL 421

Query: 464 V 464
           +
Sbjct: 422 L 422


>gi|312882126|ref|ZP_07741876.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309370262|gb|EFP97764.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 425

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 99/375 (26%), Gaps = 36/375 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G           I    +     +     L 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILIEAGYRVGVYSSPHLIKYNERVRINGS----ELN 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                 +   +     + S    +   L  ++L      ++    +       A      
Sbjct: 102 DESHISAFSFIEQQRGDTSLSFFEYGTLAALRLFLVENVDIVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--------- 282
            +               DD       K       R    G       +            
Sbjct: 162 DVSVITSLAIDHVDWLGDDINVIGYEKAGIFRPHRPAICGQPCAPSTVAAHADDIGSELY 221

Query: 283 ---CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   +Q    S +     F         +     A  L      +  +    +   
Sbjct: 222 QVGIQYDYQQTSRSSWQWSHGSFCLENLPLPNLPVQNAATALMALAKANLNISDVDIVSG 281

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGK 398
                    +   S    + +D AH  +S + +  ++     G+ I  V     D+D   
Sbjct: 282 LNKARLSGRMQQVSTDPVVLLDVAHNPHSADYLASSLHDKYQGKTIHTVVAMLHDKD--- 338

Query: 399 RPIMGKIALDLADIAIVTDDN----PRS--EDPEKIRAEIIHGIPGFIEKGN-RIEAIRT 451
                 IA  LA    +T  +    P S   +      ++   +P   E  +  +EA   
Sbjct: 339 ------IAQTLAA---LTPSSHYWYPASLHVERAATAQQLAQYLPSDTELYDTPVEAFEA 389

Query: 452 AIEMLNKQDVLVVAG 466
           A+   N  DV++V G
Sbjct: 390 ALTNANADDVILVVG 404


>gi|78213668|ref|YP_382447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9605]
 gi|118595700|sp|Q3AHP0|MURD_SYNSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78198127|gb|ABB35892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9605]
          Length = 461

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 99/292 (33%), Gaps = 27/292 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               +          + +TGT+GK++V   +  + + +GL++   G              
Sbjct: 98  GEMDTAWDALQQIPWIGITGTNGKTTVTHLLSHVLEAAGLTAPMGGNIGL---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   LA  +   +      + +E SS+ ++      +    G +T L  DH++ H +
Sbjct: 148 ---SAAELACQIGSGAKPRPDWLVMELSSYQIEA--APAVAPKIGIWTTLTPDHLERHGS 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +    A   +   LL +   A+  ADD   ++     +          +         +
Sbjct: 203 LE----AYRAIKRGLLERSECALFNADDPDLRQQRSSWNRGTWVSSEGAHPDNQPADLWI 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 +  T  +   D      +PG     N L+     +  G+    + + L     V
Sbjct: 259 DDEGMVRNNTTRLFAADV---LAMPGRHNRQNLLLVTAAALEAGLSPQQIADALRTFPGV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
           P R E +GT +         A   ++ E+ L+ ++       +VV   G  +
Sbjct: 316 PHRLEQLGTLAGASVFNDSKATNYDAAEVGLRAVQG-----PVVVLAGGQTK 362


>gi|290476452|ref|YP_003469357.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
 gi|289175790|emb|CBJ82593.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
          Length = 491

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 77/426 (18%), Positives = 140/426 (32%), Gaps = 57/426 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVT 121
           +GA  +V S+A S  +    A   +  P++     R+   L+      +G      +A+ 
Sbjct: 77  RGASVVVASTAISADNPEIIAAREARIPVI-----RRAEMLAELMRYRHG------IAIA 125

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  + +  I  ++GL    +     + +     RL T   +      S  S   
Sbjct: 126 GTHGKTTTTAMIAGIYAQAGLDPTFV-NGGLVKAAGTHARLGTSRYLIAEADESDASFLH 184

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               ++ +    TN+  DH+D +Q            F   LP  
Sbjct: 185 --------------------LQPMVAVITNIEADHMDTYQGDFENLKQTFVNFLHNLPFY 224

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD   KE++ R                 I   +  A      ++   +  +  
Sbjct: 225 GRAVMCIDDPVVKELIPRIGRYITTYGFSEEADIRITHYEQKAAQGFFTIS-RDDLPELH 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----- 356
            +   PG     NA  A  +    GI+ A +L  L +      RF+F+G  S        
Sbjct: 284 VVLNAPGRHNALNATAAVAVATEEGINDAAILASLAEFQGTGRRFDFLGEFSLKHINGKE 343

Query: 357 ---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLAD 411
               +  DY H    ++  +K  R     + IV+        R +        I     D
Sbjct: 344 GRVMLVDDYGHHPTEVDATIKAARAGWPDKRIVMLFQPHRYTRTRDLYDDFANILSQ-VD 402

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLV 463
           + ++ D     E P        +   I   G    I   +  + I   +   +   D+++
Sbjct: 403 VLLMLDVYSAGETPIPGADSRSLCRTIRSRGKLDPIFVSDSEQ-ISAMLSQVIENNDLVL 461

Query: 464 VAGKGH 469
           V G G+
Sbjct: 462 VQGAGN 467


>gi|227114782|ref|ZP_03828438.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 422

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 104/388 (26%), Gaps = 34/388 (8%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V    + L L       +    I  V GT+GK +    ++ I   +GL          +
Sbjct: 34  RVKQVAEHLQLL------QPAATIFTVAGTNGKGTTCCTLESILLAAGLRVGVYSSPHLV 87

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +        P  L          G   VS+       +   L  ++L   +  ++ 
Sbjct: 88  RYTERVRIQGKELPEALHTQAFADIEAGRGAVSLTY----FEFGTLSALQLFKQANLDVV 143

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +       A       +               +D  S    K       R   VG  
Sbjct: 144 ILEVGLGGRLDATNIVDADVSVVTSIAIDHTDWLGNDRESIGREKAGIFRQGRPAVVGEP 203

Query: 274 GKFIHLKKVCA-----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +  V A                    +   +D            V  A  A  L 
Sbjct: 204 DMPGTIADVAAEKGAQLRRRGRDWEYSMQRETWSWQDKQRELSRLPLPNVPLANAATALA 263

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
                   +  E +              T     R+ +D AH  ++   + K +  +   
Sbjct: 264 ALHYSSLNVSEEAIRHGLQHAALPGRFQTVQASPRLILDVAHNPHAAAYLAKRLAELPKT 323

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPG 438
           G++  V G   D+D       G +A    L D       + PR         +I   +  
Sbjct: 324 GKVRAVVGMLSDKDIA-----GTLAHLTPLVDAWYCAPLEGPRG----ATAQQIAEHLTR 374

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                + + A + A+    +QD+++V G
Sbjct: 375 SQSFSDVVAAWKQAMSEATEQDIVIVCG 402


>gi|87122629|ref|ZP_01078506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MED121]
 gi|86162087|gb|EAQ63375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MED121]
          Length = 447

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 107/355 (30%), Gaps = 38/355 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   ++A+TG++ KS+V + V  +   SG +    G                   +
Sbjct: 103 FCEHVNAPLVAITGSNAKSTVTTMVADMLLASGKNVAVGGNLGQP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L        +    +  +E SS  L+  R+  +        N+  DH+D + +   Y  
Sbjct: 150 DL-------LTHTPDYYVLELSSFQLETTRV--LNAKVACILNVSEDHMDRYDSLYDYQR 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
            K +++         A+    D  +  ++      G     +    +F  ++        
Sbjct: 201 VKQKVYRN----CESAVCNKQDILTAPLLPAGTPVGVFTTGLADLNEFGLIEDEGFWLCH 256

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
               +                F       A    + + + S  + E+L+    +  R EF
Sbjct: 257 GVKRLYHSSDIRLKGKHNYANFLAS---FAMLHLLGVELKSDAIAEYLKTFSGLAHRCEF 313

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +  +     I         +    L+ + +    R I +   G  +     P++  I   
Sbjct: 314 IAEHQGVTYINDSKGTNVGATLAALEGLGS--KHRNIHLILGGKGKGADFSPLLSSI--- 368

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 V   +   ED + I   +   +       +  E +   +E     D+++
Sbjct: 369 ---QQYVKSVSVFGEDAKIIIGALGA-VDNLSHYQDLDEVMVGCVEQAVADDIVL 419


>gi|323945968|gb|EGB42006.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H120]
          Length = 457

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLLLNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|301169879|emb|CBW29483.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           10810]
          Length = 475

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 119/377 (31%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA    +    A+ +   P++      + L+      +G  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN+  DH+D ++       A    
Sbjct: 173 EADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +                 I   +           I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFI 334

Query: 354 RGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           R     R+  DY H    +++ +K  R     + IV+        + +       ++   
Sbjct: 335 RPNGKVRLVDDYGHHPTEVDVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 409 LADIAIVTDDNPRSEDP 425
             D  I+ D     E P
Sbjct: 395 -VDALIMLDVYAAGEAP 410


>gi|301165433|emb|CBW25004.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteriovorax marinus SJ]
          Length = 460

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 112/352 (31%), Gaps = 31/352 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + I+AV G+ G+++VA  +    +  G + F  G + +                      
Sbjct: 111 KPIIAVCGSKGRTTVAHMIGYTLKLDGKNVFIGGTSESSFIE------------------ 152

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +         V      +   +L+        FTN+  ++ + H      +       
Sbjct: 153 YSMLPNKDEIDYVVVEVSAVQMRKLNNFHPKLVVFTNISENYPEKHFNSVGEYIETKLSI 212

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY--QGKFIHLKKVCAIHNKQQVT 292
            + L  +   ++  D   +    + A+          +   G    ++       +    
Sbjct: 213 IKTLSPDDTLVVNFDQLANNTFFRNANCQTYWYSRKSFVTMGVINEIQGTHFHDRRIHSN 272

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I+   +       + G+    N L A   C A+ +    +   + K   +P R EF+   
Sbjct: 273 INYHSEFKVNQMRIVGQNNRENLLAAVTACKALEVSDKSIQTCIAKFPGIPHRLEFLMEK 332

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +         A     L   +K+ +     ++I++ G     D    P   +I  +   +
Sbjct: 333 NGVDFYNDSKAEKMEDLCTSIKSFK----KQVILIAGGKDVEDFDFEPYAPEII-EHTRV 387

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++       E  E++   +    P     G+  E+I  A +     DV+++
Sbjct: 388 VVLV-----GESKERMNRALQEH-PQTFIVGSFEESILLAYQKSRTGDVILL 433


>gi|259907415|ref|YP_002647771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963037|emb|CAX54520.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia pyrifoliae
           Ep1/96]
 gi|283477248|emb|CAY73160.1| murD [Erwinia pyrifoliae DSM 12163]
          Length = 438

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 135/400 (33%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + ++ +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPSLMAAAQNGVEIIGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGTGGNIGLP-------------ALTLLQQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH+D +      + A       +    +  ++ 
Sbjct: 158 ELSSFQLET--ASSLHAAAATILNVTEDHMDRYPLGMQQYRAAK---LRIYENATVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V             VG          +        + +  E         L 
Sbjct: 213 ADDAMTMPVRGADARCVSFGADVGDYH-------LTRQQGSTWLRVQGEKVLNTDEMHLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L+ L   + +P RF+ V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRFQRVHEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +    +G + ++ G  G   D     R + G       D   +        +
Sbjct: 326 STEAALNGL--HPAGMLWLLLGGDGKSADFSPLTRYLQG-------DRIRIYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+       ++     EA++     +   D++++
Sbjct: 377 LAALRPEV------AVQTETMAEAVQQIATQVQPGDLVLL 410


>gi|167856479|ref|ZP_02479196.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
 gi|167852402|gb|EDS23699.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
          Length = 475

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/440 (16%), Positives = 139/440 (31%), Gaps = 54/440 (12%)

Query: 47  VAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFL 102
           +A  G K     FI        GA  +V SSA +  +           P++      + L
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPVIQRA---QML 111

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +      +G      +A+ GT GK++  + +  I   +GL    +     + S  ++  L
Sbjct: 112 AEIMRFRHG------IAIAGTHGKTTTTAMISMIYTEAGLDPTFV-NGGLVKSAGKNAHL 164

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                     A +  S     H+    S                   TN+  DH+D +  
Sbjct: 165 G---ASRYLIAEADESDASFLHLQPMVS-----------------VVTNIEPDHMDTYGG 204

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                      F   LP    A++ ADD    E+  +                   ++  
Sbjct: 205 DFEKMKETYVRFLRNLPFYGLAVMCADDETVMEIAPKVGRQVISYGFSEKADY--RIEDY 262

Query: 283 CAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   T+     +   +   +PG     NA  A  +    GI +  +L  L     
Sbjct: 263 QQTGFQGHYTVVCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQG 322

Query: 342 VPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              RF+ +G+  R      +  DY H    +++ +K  R     + +V+        + +
Sbjct: 323 AGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTR 382

Query: 399 R--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAI 449
                  ++     D  I+ +     E P      + +   I + G    I   +  +  
Sbjct: 383 DLFDDFVQVLSQ-VDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLG 441

Query: 450 RTAIEMLNKQDVLVVAGKGH 469
               +++   D+++  G G+
Sbjct: 442 EVLDQIIQDGDLILAQGAGN 461


>gi|15827435|ref|NP_301698.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae TN]
 gi|221229912|ref|YP_002503328.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium leprae
           Br4923]
 gi|13431702|sp|P57994|MURC_MYCLE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766014|sp|B8ZQQ1|MURC_MYCLB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|13092985|emb|CAC31296.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae]
 gi|219933019|emb|CAR71010.1| UDP-N-acetyl-muramate-alanine ligase [Mycobacterium leprae Br4923]
          Length = 495

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 133/424 (31%), Gaps = 56/424 (13%)

Query: 67  GAEAIVVSS---AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           GA A++        +  +     R   P+L     R  +   A  + G      L V GT
Sbjct: 73  GATAVITIRTAIPKTNPELVEARRRGIPVL----LRSAV--LARLMDG---CTTLMVAGT 123

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +    Q  G                 D        + +    ++       
Sbjct: 124 HGKTTTTSMLVVALQHCGC----------------DPSFVVGGELAVVGTNAHHGLGACF 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S   L ++            TN+  DH+D++ +  AY       F E       
Sbjct: 168 VAEADESDGSLLEY-----TPNVAVVTNIDSDHLDFYGSVDAYIRV-FDSFVERFALGGA 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL-------KKVCAIHNKQQVTISVE 296
            ++  DD  +  + +R    G RVL  G   +            +         + ++ +
Sbjct: 222 LVVCNDDPGAAALARRTAELGIRVLRYGSDDRIGETLAARLLSWEQQGTGAVAHIQLAGQ 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                   P+PG     NAL A    I IG  +  VL+ L     V  RFE VGT+  G 
Sbjct: 282 PNSRVMRLPVPGRHMALNALGALLAAIEIGASTDEVLDGLAGFRGVRRRFELVGTSGVGQ 341

Query: 357 ------RIYVDYAHTSNSLEMILKNIRTITS----GRIIVVFG-CGGDRDQGKRPIMGKI 405
                 R++ DYAH    +   L   R +      GR IVVF      R +      G+ 
Sbjct: 342 ASNSLVRVFDDYAHHPTEISATLAAFRIMLEQSGGGRCIVVFQPHLYSRTKALSREFGRA 401

Query: 406 ALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
               AD   +   N   E P      A +   +        +    +          DV+
Sbjct: 402 LSA-ADEVFIVGVNGAREQPLAGVSGASVAKHVSVPVRYIPDYSAVVIEVAAAAGPGDVI 460

Query: 463 VVAG 466
           V  G
Sbjct: 461 VTMG 464


>gi|332971030|gb|EGK10001.1| tetrahydrofolate synthase/dihydrofolate synthase [Kingella kingae
           ATCC 23330]
          Length = 440

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/397 (13%), Positives = 121/397 (30%), Gaps = 32/397 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +    + +  +    I+ V GT+GK S  +F+ QI  ++G     +     +    +
Sbjct: 34  LERVGRVKNAMQLQPACPIIVVAGTNGKGSTCAFLSQIYAQAGYKVGTLTSPHLLRFNER 93

Query: 159 DNRLTTPSPIYL---------AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---A 206
               T P              A       +    +          +Q  +  +++     
Sbjct: 94  IAINTHPVSDEQIVASFERIEAARGDTSLTYFEFNTLAAVDIFVREQVDVMILEVGLGGR 153

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL-------PKESPAIIYADDAYSKEVMKR 259
               N+         +      A +    E +        +   A I   +   + +   
Sbjct: 154 LDAVNIFDADCAIVTSVDLDHQAFLGDTVEQVAREKAGVFRAGKAAICGQNPAPQSLADY 213

Query: 260 AHNAGCR-------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           AH  G               + +  +     A   +  + +S   ++   +  L G +Q+
Sbjct: 214 AHELGAPLVLAKRDFSFSKLENQQWNFHFTPADEVQSSLHLSPRNRNALPMPALRGSYQL 273

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA  A      +     + +  +++  ++                 +D  H  ++   +
Sbjct: 274 GNAACALAAIECLTPKLPVDVGAIKRGLLLAENVGRFQVLPGRPLTVLDVGHNPHAARAL 333

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRA 430
            +++  +    + I VF    D+D      +  I  D  D   +   + PR      ++ 
Sbjct: 334 RQSLIALPFSQKRIAVFSMLADKDID---SVLDIVRDQFDEWYIAPLHLPRGRSLADLQE 390

Query: 431 EIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   GI    +  N   A   A+ +  + D +VV G
Sbjct: 391 RLQAHGIDAVKQFENVQAACSAALSVAGENDRIVVFG 427


>gi|262341152|ref|YP_003284007.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Blattabacterium
           sp. (Blattella germanica) str. Bge]
 gi|262272489|gb|ACY40397.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Blattabacterium
           sp. (Blattella germanica) str. Bge]
          Length = 453

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 123/351 (35%), Gaps = 36/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+++TG++GK++ +S + +I +R G+     G                          
Sbjct: 106 SYIISITGSNGKTTTSSIIYKILKREGIDVGIAGNIGRS--------------------F 145

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S    +      +E SS  LD  ++   +       N+  DH+D +   ++Y ++K ++ 
Sbjct: 146 SKEVIKKKDVYVLEVSSFQLDDCQIF--RSNIAVLLNITEDHLDRYDDIESYMHSKFKIA 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                ++     + DD   ++ +K+       +     +   I           +     
Sbjct: 204 TLQKKEDIFIYNH-DDPLIRKGLKKYPIFSHCIPFSIKEELHIGAYIKNNKIFIRNQKNQ 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                     PL G+  +YN + +  +     +    ++  + KL  +  R E + + + 
Sbjct: 263 EICFFNVKDIPLIGDHNLYNIMASLMISEIFNVKKKSIVSTILKLKPIEHRMEKILSING 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-IMGKIALDLADIA 413
              I    A   +++    K+     +G II +    G +D+G     +  +        
Sbjct: 323 VQFINDSKATNVHAVFSAFKS----MNGPIIWI---AGGKDKGNNYIELIPLVQKKVKAI 375

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I    N  +E       +I   I   +E  +  +A+  A  + +  D +++
Sbjct: 376 ICLGIN--NEKIYNFFKDI---IDIILETKSIQKAVYMAYILSSHGDNILL 421


>gi|222524101|ref|YP_002568572.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus sp. Y-400-fl]
 gi|222447980|gb|ACM52246.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus sp. Y-400-fl]
          Length = 461

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 128/423 (30%), Gaps = 30/423 (7%)

Query: 56  GHL--FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   ++     QGA+ ++ ++A           +   I      R   +        + 
Sbjct: 39  GHDPAYV-----QGADVVLATAAIRGTHPELEAAAAAGI-----PRLSRADLWRLWSEQR 88

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++A+ GT GK++  +      + +G+    +   + + +     +   P    + +A
Sbjct: 89  P--VIAIAGTHGKTTTTALTALALRGAGIRCGFL-IGADVPALGGSAQWGDPEAPLVIEA 145

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             Y         ++   ++   +     +      +T          +  +         
Sbjct: 146 DEYDRVFLALTPALAIITN--VEWDHPDVYPTPSEYTAAFAAFSRQVRDPRRLLVCADDP 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L  +S A +Y  D +   +     +     L     G                   
Sbjct: 204 GALALAGQSEARLYGIDEH---IATDPVSCRLAPLDWTASGVTGTATGQQFDLWYYDRRS 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       +PGE  V NA  A       G D    +  L +      RFE+ G + 
Sbjct: 261 FGRRLAATVTLAIPGEHNVRNATAALAAAALWGADLRTAVTALAEYRGSSRRFEWRG-DV 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADI 412
            G  +  DYAH    ++  L   R     R ++V+       + +        A   A +
Sbjct: 320 GGITVIDDYAHHPTEVQATLLAARQRYPDRRLIVYLQPHTFSRTRSLWDQWPAAFREAAV 379

Query: 413 AIVTDDNPRSE--DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            +V D  P  E  DP  +        I HGIP     G    A    + +    DV++  
Sbjct: 380 VLVGDIYPAREQGDPVALAQSLVDHLIAHGIP-ARYAGPSALAPSALLAVAQSGDVVLTL 438

Query: 466 GKG 468
           G G
Sbjct: 439 GAG 441


>gi|73542665|ref|YP_297185.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           eutropha JMP134]
 gi|118595678|sp|Q46WZ2|MURD_RALEJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72120078|gb|AAZ62341.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia eutropha
           JMP134]
          Length = 503

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G     NA+ A  LC AI +    +L  L +    P R E+V T             
Sbjct: 320 HIRGMHNATNAMAALALCRAIDLPLNALLHGLREYRGEPHRVEWVATIDEVEYFDDSKGT 379

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +    L  +      + +V+   G  + Q   P+   +A   A   ++         
Sbjct: 380 NVGATVAALSGLD-----KRVVLIAGGEGKGQDFSPLAAPVA-QYARAVVLI-----GRA 428

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R  +       ++     EA+  A E+    DV+++
Sbjct: 429 AGELRDALQGSGASLVDAATLEEAVNKAAELAEGGDVVLL 468


>gi|56708206|ref|YP_170102.1| hypothetical protein FTT_1129c [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670677|ref|YP_667234.1| hypothetical protein FTF1129c [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118497701|ref|YP_898751.1| Mur ligase family protein [Francisella tularensis subsp. novicida
           U112]
 gi|134302120|ref|YP_001122089.1| glutamate ligase domain-containing protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|194323673|ref|ZP_03057449.1| Mur ligase family, glutamate ligase domain protein [Francisella
           tularensis subsp. novicida FTE]
 gi|224457310|ref|ZP_03665783.1| glutamate ligase domain-containing protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370693|ref|ZP_04986698.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875019|ref|ZP_05247729.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604698|emb|CAG45762.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321010|emb|CAL09145.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423607|gb|ABK89997.1| Mur ligase family protein [Francisella novicida U112]
 gi|134049897|gb|ABO46968.1| glutamate ligase domain protein, Mur ligase family [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|151568936|gb|EDN34590.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|194322037|gb|EDX19519.1| Mur ligase family, glutamate ligase domain protein [Francisella
           tularensis subsp. novicida FTE]
 gi|254841018|gb|EET19454.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159424|gb|ADA78815.1| glutamate ligase domain protein, Mur ligase family [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 561

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 119/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDQLIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKE------------VMKRAHNAGCRVLSVGYQGKF 276
           A+ +        +    I   D    +            V +       +          
Sbjct: 283 AEAKSIVFRALGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYAC 342

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I               + +   +         +  + NA++A  L   +GI   ++ + L
Sbjct: 343 IVEDGNFVWVEANSKKVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   +     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|163942205|ref|YP_001647089.1| FolC bifunctional protein [Bacillus weihenstephanensis KBAB4]
 gi|163864402|gb|ABY45461.1| FolC bifunctional protein [Bacillus weihenstephanensis KBAB4]
          Length = 433

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 90/309 (29%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAIYYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGD 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           ++V K  H +   +            K 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVKNEEALQVIQKVAKENHASLYELGKQFTILHKHSNKD 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                           +         G   +    V         + +   ++   +   
Sbjct: 239 GEHFDFDCPFASFENVRISMKGIHQVGNAALALMAVMYLKTYLSFLINEEEMKAGLQEAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKKKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   +  EAI T  +M+ 
Sbjct: 354 -MVGQLEKVADEIIFTT----FAFDRAISADKLASYSQQESKLVFEDWKEAIDTKADMIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 EHDVFIITG 417


>gi|256827367|ref|YP_003151326.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
 gi|256583510|gb|ACU94644.1| UDP-N-acetylmuramate--alanine ligase [Cryptobacterium curtum DSM
           15641]
          Length = 471

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 140/424 (33%), Gaps = 27/424 (6%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            +  Q    G E  +  +A ++ D  A     T   ++DN  + ++  A  L   H   +
Sbjct: 41  RYTQQLREVGVEIFIGQAAENIPDNPAPDVVVTSTAILDNNPELIAAKARNLPIWHRARM 100

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA  G   K+   +        S + +  +       +F           +      ++ 
Sbjct: 101 LAQLGVGKKTIAIAGTHGKTTTSSMVASALDGIGADPTFLI------GGIVRAYHTNAHS 154

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  V  + S           +   A   TN+  DH+D++   +   +AK   F   
Sbjct: 155 GEGAYYVVEADESDKSFTY-----LDPYAVLVTNVEADHLDHYNDLEEI-HAKFTEFMSQ 208

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P +   ++ ADD     +            S       I       + +   + +    
Sbjct: 209 VPDDGLLVVCADDEVLVSLAASTGKRMVTYGSAEGADAHIESWAPAGVGSTFTLKLPDGT 268

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                +   PG   V NA     L   IG D+  V   L     V  RF+ VG  + G  
Sbjct: 269 LVEGSVKQNPGRHNVLNAAGTLTLLWGIGEDAQDVARSLSNFAGVRRRFDLVG-EADGVT 327

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF-----GCGGDRDQGKRPIMGKIALDLADI 412
           I  DYAH    +   +   + +   R+ V+F        G      R      A D AD 
Sbjct: 328 IVDDYAHHPTEIAATIAAAKKLDFKRVHVLFQPHRYSRVGLFTDVLRSEFAH-AFDEADT 386

Query: 413 AIVTDDNPRSEDP-----EKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A   D  P  E P      K   +++      P  +   +R++ + + ++M+   D+++ 
Sbjct: 387 AAFMDVYPAGETPVPGVNGKTFLDVLKDSSSHPALVYIPHRLDTVSSLLDMVEAGDLVLT 446

Query: 465 AGKG 468
            G G
Sbjct: 447 MGAG 450


>gi|220906241|ref|YP_002481552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 7425]
 gi|254766047|sp|B8HW13|MURD_CYAP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219862852|gb|ACL43191.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7425]
          Length = 453

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 23/285 (8%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V  E SS+ L+   L  +      +T    DH++ H T + Y   K  L    L +   
Sbjct: 158 WVIAEISSYQLES--LPRLAPKIAVWTTFTPDHLERHGTLECYRETKAVL----LQQAEY 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++  DD Y ++ +             G       +++   +     V +  +       
Sbjct: 212 KVLNGDDPYLRQELSDRWPEVWWTSCNGRAALPHGIERGIYLEEGW-VKVQEQPIVPVSS 270

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           + +PG   + N L+A  +    GI  A + E +     VP R E + T S    I    A
Sbjct: 271 WKMPGHHNLQNLLLAVAVAHLGGIPVAAIAEAVNNFGGVPHRLEPICTWSGIQFINDSKA 330

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++ E  L  +        +++   G  +    R  +  I    A + ++        
Sbjct: 331 TNYDAAETGLVAVPA-----PVILIAGGQAKQGDDRRWLEMIQTKAAAVLLIGA------ 379

Query: 424 DPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK--QDVLVV 464
               + A+ +   G   +        A+  A E+  K   +++++
Sbjct: 380 -AANLFAQRLQEVGYDRYEIVETMANAVPRAAELAKKYSANIVLL 423


>gi|313905181|ref|ZP_07838549.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
 gi|313469934|gb|EFR65268.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
          Length = 452

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 112/352 (31%), Gaps = 38/352 (10%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +LAVTGT+GK++  + + +I +      + +G   T  +                    
Sbjct: 108 KVLAVTGTNGKTTTVTLLGEIMKDYYPEVYVVGNIGTPYTDVV----------------- 150

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
            L          E SS  ++   ++    +A + TN+  DH++ H T + Y   K R+ E
Sbjct: 151 -LQQTENAWTVAEVSSFQMET--IEEFHPVASALTNITEDHLNRHHTMEEYIRCKARVTE 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               ++   + Y +D   +   ++ +       S     K I+L+            I V
Sbjct: 208 NQTAEDCCVLNY-EDEVLRPFAEKVNAKVIFFSSRRVLEKGIYLEGDTIRLKDGGEVIDV 266

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     L G     N +VA  +    G+    +   +     V  R EFV      
Sbjct: 267 ---VKTGDLQLLGLHNFENVMVAVAMAYFAGVPMDSIRRTICAFRGVEHRIEFVEEKKGV 323

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
                      ++    ++        R   + G G D+       +      +   A++
Sbjct: 324 RYYNDSKGTNPDAAIKGIQA-----MDRPTCLIGGGFDKQLPFDDWINAFDGKVKFFALI 378

Query: 416 TDDNPRSEDPEKIRAEIIH-GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  +  + I       G P        N  EA++       + D +++
Sbjct: 379 ------GQTAQTIAGTAERLGFPKEKIAFCDNLEEAVKACASHAVEGDAVLL 424


>gi|146328783|ref|YP_001209872.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
 gi|146232253|gb|ABQ13231.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
          Length = 436

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 47/347 (13%)

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG++GKS+V + +    +  GL +   G        A       P             
Sbjct: 105 AVTGSNGKSTVVTMLADAARAVGLKTQLCGNIGKSVLTAWLEDEEEPDL----------- 153

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                   +E SS+ L+  R   + +  G   N+  DH+D + +   Y  AK  L ++  
Sbjct: 154 ------YVLELSSYQLE--RCPSLMIDVGVVLNVTPDHLDRYDSFLDYVAAKSHLAQQTQ 205

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I+  DD Y +++   +            + +   +             ++ +  
Sbjct: 206 LT----ILNGDDEYCRQMAPLSRQTVFFGAQCVNRVENGAI------------IVNGQTV 249

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  + G+   YNALVA  +   +GID +  LE L+    +P R   V   +    +
Sbjct: 250 LTADELKIHGQHNAYNALVALLMASGLGIDISYTLEALKNFRGLPHRMCEVACFNDVLWL 309

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTD 417
               A    S    L       +    ++ G  G + Q    +   +    +  + ++  
Sbjct: 310 NDSKATNIASTAAALVGC----TRPTWLIVGGVG-KGQDFHQLAAVLLQAPIKHVLMIGV 364

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           DN        + A        F + G    A+  A +  +  D +++
Sbjct: 365 DNH------TMIAAFKKANIAFHDCGTIKAAVSYAYQNADAGDQVLL 405


>gi|292655246|ref|YP_003535143.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Haloferax volcanii DS2]
 gi|291370736|gb|ADE02963.1| folylpolyglutamate synthase / 7,8-dihydropteroate reductase /
           dihydropteroate synthase [Haloferax volcanii DS2]
          Length = 838

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 26/195 (13%)

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEKLHV 341
              H +  VT+  + +  D   PL G +Q  NA +A  L   +  D     +    +   
Sbjct: 233 RVNHQEAAVTVETDAETLDVRIPLLGAYQARNAGIAVSLARQVRPDIDAEAIHRGLRNAH 292

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRFE +GT      + +D AH  ++   +   +       + +V+G   D+D G    
Sbjct: 293 WPGRFEVMGTEPT---VVLDGAHNPDACAQVATVLDEFDYDDLHLVYGAMHDKDHG---E 346

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA--------- 452
           M     ++A +     D  R EDPE I + +   + G         A+ T          
Sbjct: 347 MVGALPEVASVVTCKADISRGEDPE-ILSSVFERLNGP--------AVETGGAVAAALDR 397

Query: 453 -IEMLNKQDVLVVAG 466
                +  D ++V G
Sbjct: 398 ARARADPDDCVLVVG 412


>gi|187933718|ref|YP_001884427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B str. Eklund 17B]
 gi|226711899|sp|B2TIC9|MURD_CLOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187721871|gb|ACD23092.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 458

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 113/358 (31%), Gaps = 43/358 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I  +TG+ GK++  + + ++ Q  G  ++  G               TP   
Sbjct: 111 FVRYCKAKIYGITGSDGKTTTTTIISKMLQEEGYKTWVGGNIG------------TPLFA 158

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            + +  S         V +E SS  L       + +     TNL  +H+D H+  Q Y +
Sbjct: 159 QIEEIKSEDR------VVLELSSFQL---MTMNLPMDIAVCTNLAPNHLDMHKDMQEYID 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F       +  +            +     G +  + G   +F   +++      
Sbjct: 210 AKKNIFLYQDATNTLIVN----------RENEITYGFKAEAKGVVREFSSKRELKEGAYY 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   + + GK+      +           +AA +     +    + +  E  + V  R E
Sbjct: 260 KDGILYLSGKEVCKKDNIVIKGMHNVENYLAAFIATKNDVSIENMKKVAESFNGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V   +         A +       LK        + +++   G D+     P+      
Sbjct: 320 LVREINGVKYYNDSIASSPTRTLAGLKAFD-----KRVILIAGGYDKHLLFEPL-ANEGY 373

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--GIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
                 I+       E  + +  E+    GI     E     EA++ A  +  + D++
Sbjct: 374 PYIKELILLGQT--KEKIKDVFKELEASKGIKINISEVSTLEEAVKKAQNLARQGDII 429


>gi|17986863|ref|NP_539497.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|23502301|ref|NP_698428.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis 1330]
 gi|62290323|ref|YP_222116.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 1 str.
           9-941]
 gi|82700247|ref|YP_414821.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis biovar
           Abortus 2308]
 gi|148560387|ref|YP_001259323.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ovis ATCC 25840]
 gi|161619378|ref|YP_001593265.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella canis ATCC 23365]
 gi|163843686|ref|YP_001628090.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis ATCC 23445]
 gi|189024556|ref|YP_001935324.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus S19]
 gi|225627881|ref|ZP_03785917.1| UDP-N-acetylmuramate--alanine ligase [Brucella ceti str. Cudo]
 gi|225852912|ref|YP_002733145.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis ATCC
           23457]
 gi|237815830|ref|ZP_04594827.1| UDP-N-acetylmuramate--alanine ligase [Brucella abortus str. 2308 A]
 gi|254689624|ref|ZP_05152878.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 6 str.
           870]
 gi|254694114|ref|ZP_05155942.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697766|ref|ZP_05159594.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702151|ref|ZP_05163979.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|254704688|ref|ZP_05166516.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|254708102|ref|ZP_05169930.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|254710471|ref|ZP_05172282.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|254714464|ref|ZP_05176275.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M644/93/1]
 gi|254717362|ref|ZP_05179173.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M13/05/1]
 gi|254730655|ref|ZP_05189233.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 4 str.
           292]
 gi|256031965|ref|ZP_05445579.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|256045060|ref|ZP_05447961.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113983|ref|ZP_05454766.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|256160164|ref|ZP_05457858.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti M490/95/1]
 gi|256255370|ref|ZP_05460906.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella ceti B1/94]
 gi|256257874|ref|ZP_05463410.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|256263607|ref|ZP_05466139.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369846|ref|YP_003107357.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella microti CCM 4915]
 gi|260169102|ref|ZP_05755913.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella sp. F5/99]
 gi|260546865|ref|ZP_05822604.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus NCTC 8038]
 gi|260565341|ref|ZP_05835825.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|260755152|ref|ZP_05867500.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 6
           str. 870]
 gi|260758371|ref|ZP_05870719.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 4
           str. 292]
 gi|260762197|ref|ZP_05874540.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884165|ref|ZP_05895779.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|261214414|ref|ZP_05928695.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 3
           str. Tulya]
 gi|261219193|ref|ZP_05933474.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M13/05/1]
 gi|261222572|ref|ZP_05936853.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti B1/94]
 gi|261315605|ref|ZP_05954802.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|261318043|ref|ZP_05957240.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|261322254|ref|ZP_05961451.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M644/93/1]
 gi|261752721|ref|ZP_05996430.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|261755381|ref|ZP_05999090.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|261758609|ref|ZP_06002318.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. F5/99]
 gi|265989074|ref|ZP_06101631.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|265991487|ref|ZP_06104044.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995325|ref|ZP_06107882.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|265998537|ref|ZP_06111094.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M490/95/1]
 gi|297248710|ref|ZP_06932428.1| UDP-N-acetylmuramate-alanine ligase [Brucella abortus bv. 5 str.
           B3196]
 gi|306843223|ref|ZP_07475834.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO2]
 gi|54037855|sp|P65469|MURC_BRUSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041505|sp|P65468|MURC_BRUME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75496536|sp|Q57C79|MURC_BRUAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892694|sp|Q2YLY6|MURC_BRUA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222961|sp|A5VRH6|MURC_BRUO2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028976|sp|A9M689|MURC_BRUC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028977|sp|B0CHL9|MURC_BRUSI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229486472|sp|B2S6Q3|MURC_BRUA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765986|sp|C0RE69|MURC_BRUMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17982501|gb|AAL51761.1| udp-n-acetylmuramate--alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|23348277|gb|AAN30343.1| UDP-N-acetylmuramate--alanine ligase [Brucella suis 1330]
 gi|62196455|gb|AAX74755.1| MurC, UDP-N-acetylmuramate--alanine ligase [Brucella abortus bv. 1
           str. 9-941]
 gi|82616348|emb|CAJ11405.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramate--ala [Brucella
           melitensis biovar Abortus 2308]
 gi|148371644|gb|ABQ61623.1| UDP-N-acetylmuramate--alanine ligase [Brucella ovis ATCC 25840]
 gi|161336189|gb|ABX62494.1| UDP-N-acetylmuramate--alanine ligase [Brucella canis ATCC 23365]
 gi|163674409|gb|ABY38520.1| UDP-N-acetylmuramate--alanine ligase [Brucella suis ATCC 23445]
 gi|189020128|gb|ACD72850.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella abortus S19]
 gi|225617044|gb|EEH14090.1| UDP-N-acetylmuramate--alanine ligase [Brucella ceti str. Cudo]
 gi|225641277|gb|ACO01191.1| UDP-N-acetylmuramate--alanine ligase [Brucella melitensis ATCC
           23457]
 gi|237789128|gb|EEP63339.1| UDP-N-acetylmuramate--alanine ligase [Brucella abortus str. 2308 A]
 gi|256000009|gb|ACU48408.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella microti CCM 4915]
 gi|260095915|gb|EEW79792.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus NCTC 8038]
 gi|260151409|gb|EEW86503.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. 16M]
 gi|260668689|gb|EEX55629.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 4
           str. 292]
 gi|260672629|gb|EEX59450.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675260|gb|EEX62081.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 6
           str. 870]
 gi|260873693|gb|EEX80762.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella abortus bv. 9 str.
           C68]
 gi|260916021|gb|EEX82882.1| UDP-N-acetylmuramoyl-L-alanine synthetase [Brucella abortus bv. 3
           str. Tulya]
 gi|260921156|gb|EEX87809.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti B1/94]
 gi|260924282|gb|EEX90850.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M13/05/1]
 gi|261294944|gb|EEX98440.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M644/93/1]
 gi|261297266|gb|EEY00763.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           B2/94]
 gi|261304631|gb|EEY08128.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M163/99/10]
 gi|261738593|gb|EEY26589.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella sp. F5/99]
 gi|261742474|gb|EEY30400.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 5 str.
           513]
 gi|261745134|gb|EEY33060.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella suis bv. 3 str.
           686]
 gi|262553161|gb|EEZ08995.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella ceti M490/95/1]
 gi|262766438|gb|EEZ12227.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 3
           str. Ether]
 gi|263002271|gb|EEZ14846.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093658|gb|EEZ17663.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella melitensis bv. 2
           str. 63/9]
 gi|264661271|gb|EEZ31532.1| UDP-N-acetylmuramate-L-alanine ligase [Brucella pinnipedialis
           M292/94/1]
 gi|297175879|gb|EFH35226.1| UDP-N-acetylmuramate-alanine ligase [Brucella abortus bv. 5 str.
           B3196]
 gi|306286588|gb|EFM58165.1| UDP-N-acetylmuramate--alanine ligase [Brucella sp. BO2]
 gi|326409454|gb|ADZ66519.1| UDP-N-acetylmuramate--L-alanine ligase [Brucella melitensis M28]
 gi|326539160|gb|ADZ87375.1| UDP-N-acetylmuramate--alanine ligase [Brucella melitensis M5-90]
          Length = 471

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 94/285 (32%), Gaps = 21/285 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +          Q +   + +             +       +  D   P+PG   V NA 
Sbjct: 232 DRRIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNAT 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI S  +   L     V  RF   G +  G  I+ DY H    +  +LK  
Sbjct: 292 AAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTG-SWNGVEIFDDYGHHPVEIRAVLKAA 350

Query: 377 RT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------ 425
           R       GR++ +      R      +  + A     AD  IV       E+P      
Sbjct: 351 REATSQAGGRVVAIV--QPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           E++ + I              EA+      +    D +V  G G+
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALAPLVASIAQAGDFVVCLGAGN 453


>gi|256369849|ref|YP_003107360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
 gi|256000012|gb|ACU48411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
          Length = 467

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGIDDAYCQVIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|305680780|ref|ZP_07403587.1| bifunctional protein FolC [Corynebacterium matruchotii ATCC 14266]
 gi|305658985|gb|EFM48485.1| bifunctional protein FolC [Corynebacterium matruchotii ATCC 14266]
          Length = 493

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 17/134 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V +      +++D AH  +    + + + R     R++ V    GD+D      
Sbjct: 350 PGRLERVRSAPT---VFLDAAHNPHGARALAQALERDFDFTRLVGVVSVLGDKDV---RG 403

Query: 402 MGKIALDLADIAIVT-DDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + +         +VT + +PR   +E+   I  EI  G        +   A+  A+E+  
Sbjct: 404 ILRELEPCLHELVVTQNTSPRVLPAEELADIAREIF-GEERVHVAQDLPGAVALAVELAE 462

Query: 458 KQDV-----LVVAG 466
             +V     +++ G
Sbjct: 463 DTEVQSGAGVIITG 476


>gi|256395244|ref|YP_003116808.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
 gi|256361470|gb|ACU74967.1| UDP-N-acetylmuramate/alanine ligase [Catenulispora acidiphila DSM
           44928]
          Length = 469

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 142/422 (33%), Gaps = 45/422 (10%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           I QA     G + +VVS+     +                  + L   ++          
Sbjct: 66  IGQAPENLDGVDTVVVSTDIPAGNIEVVEAKARG-------LRLLHRASALASLMPGYRS 118

Query: 118 LAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
           +A+ GT GK++ +S V    + +G   SF IG    I    +     +   +      S 
Sbjct: 119 VAIAGTHGKTTTSSMVTVALRHAGLDPSFVIG--GEIGETGESGHAGSGDVLVAEADESD 176

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            +                               TN+  DH D+         A+ + F  
Sbjct: 177 GTFTHYR--------------------PDISVITNIELDHPDHFADVAQVR-AEFQDFAG 215

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISV 295
            L      + YADD  ++ + +R    G RVL+ G      I +  V  +      T+  
Sbjct: 216 RLEPGGTLVCYADDPAARTIAERTAARGVRVLTYGAGADVDIRVTDVSTVGGFPVFTLVT 275

Query: 296 -EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         +P      NA  A G+ +A+G+D    LE +        R +F+G  + 
Sbjct: 276 AEDAHGPITLSIPARHNALNAAAALGVALALGVDVEPYLEGVAGFSGARRRMQFLG-EAS 334

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
           G ++Y DY H    +  +L   R +   GR++  F      R        G  AL  AD+
Sbjct: 335 GVKVYDDYGHHPTEIASVLSAARELAGQGRVVAAFQPHRYFRTNTFLHEFGP-ALGGADV 393

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +V D     E P      + I AE        + + +     +   E+    D++V  G
Sbjct: 394 VVVLDVYAHGEKPIPGVGGDVIAAETGLPPEASVFEPDFDRVPQRLAELAAPGDLVVTVG 453

Query: 467 KG 468
            G
Sbjct: 454 AG 455


>gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
 gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
          Length = 734

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 139/474 (29%), Gaps = 63/474 (13%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ-----AI 64
              +L   L+       +  I   +   + I+ G  + A             +     A 
Sbjct: 295 TVGKLCEILNAELRNAADVPITSFAFGKQKIKPGCAYFA-----------ADKETAVTAF 343

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
            +GA  I+ +                P +VV N    LS  A  +        +AV  + 
Sbjct: 344 EKGAAVIITTQPIE----------KIPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSP 393

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
            K +  S ++Q+      +   I  T+  +S       +TP        +S         
Sbjct: 394 EKINPLSMIEQMLSSKMETVHSISVTNNYNSMLHAMFASTPKTETAVINVS--------- 444

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                  +G +  R+        +         +  +  +     +       + +    
Sbjct: 445 -----CVNGGNVERVSQTANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAV 499

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           II  DD     +           + V  +        +   HNK    I     ++    
Sbjct: 500 IINIDDKNLAGIFTI--PQDIITIGVDNRMADYFADNIELSHNKISFDIIHGADNYHIEL 557

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
               +  VY AL    L   +GI    ++  +EK     G       N RG  +  D+ +
Sbjct: 558 YSDDKHSVYQALATFALGEIMGIPPKQIIPAIEKYRPSTGLTTVR--NERGIYVISDFEN 615

Query: 365 ----TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTD 417
               +  +    L  ++     R I V    GD D+ +  I   +G I    +    V  
Sbjct: 616 EAVESVGAALKELCTMQLPPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVNITVC- 674

Query: 418 DNPRSEDPEKIR--AEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
                E   ++   A++      F+ K N  +A+       L   D ++   KG
Sbjct: 675 ---YGETAAELMKTADLKS---KFVIKLNTRQALTEFLKLNLRDNDAVLF--KG 720


>gi|148241126|ref|YP_001226283.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. RCC307]
 gi|189082508|sp|A5GPX1|MURC_SYNR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147849436|emb|CAK26930.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. RCC307]
          Length = 479

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 122/428 (28%), Gaps = 59/428 (13%)

Query: 62  QAIAQG---AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            AI  G   A  +VVSSA    +          + VV       S   + L      + +
Sbjct: 68  DAICSGVDRAPLVVVSSAIPETNPELEAARGAGLRVVHR-----SELLAWLINAQ--HSI 120

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AV G+ GK++ +S +  +   +GL    I     + +F  + R                 
Sbjct: 121 AVAGSHGKTTTSSLIASLLHSAGLDPTAI-IGGVVPAFGSNARNGAGE------------ 167

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                      +        L       G  TNL  DH D++    A      R      
Sbjct: 168 --------WLVAEADESDGSLVRFHPQLGLITNLELDHTDHYPNLDALVATMRRFSGNC- 218

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                      +     +           L       F  +         +   +    +
Sbjct: 219 ------SSVLANRDCPVLSAELSADHWWSLQENSSAHFRAVPLSLDGAGCRADYLEDGRR 272

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +   P+ G   + NAL A   C   G   A +   L +L     RF+  G   +G  I
Sbjct: 273 LGELALPMAGIHNLSNALAAVAACRLAGASFADLQAALTELVPPGRRFDLRG-EWQGRLI 331

Query: 359 YVDYAHTSNSLEMILKNIR----------TITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
             DYAH  + ++  L   +               R++ VF     R       M + A  
Sbjct: 332 VDDYAHHPSEVDATLTMAQLMVSSGKSTLPWVPKRVVAVF--QPHRYSRTAQFMERFAEA 389

Query: 409 L--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           L  AD  +V       E          +  ++           +    +    +  +  D
Sbjct: 390 LGCADEVLVAPLYSAGESAIEGVSSATLAEKVQQAGHSARALADMDSLVDAVQQCSSAGD 449

Query: 461 VLVVAGKG 468
           +++V G G
Sbjct: 450 LVLVMGAG 457


>gi|294783034|ref|ZP_06748358.1| tetrahydrofolate synthase [Fusobacterium sp. 1_1_41FAA]
 gi|294479912|gb|EFG27689.1| tetrahydrofolate synthase [Fusobacterium sp. 1_1_41FAA]
          Length = 415

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 122/360 (33%), Gaps = 25/360 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQDNRLTTPS-- 166
           ++   ++ +TGT+GK SV++ V+++   +G    +             + +++  +    
Sbjct: 40  QNSYKVIHITGTNGKGSVSTTVERVLIDAGYKVGKYTSPHILEFNERISFNDKYISNEDI 99

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I   K  +         +         +   L+         TN+  + +
Sbjct: 100 AKYYEKVKKIIEEHKIQATFFEVTTAMMFDYFKDMKAEYVILEAGMGGRYDATNICDNTV 159

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                        +      +  E   II                     ++  Y     
Sbjct: 160 SVITNVSLDHTEYLGDTIYKIATEKAGIIKNCPYTIFADNNPDVKKAIEEVTDKYVNVLD 219

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             K      +    T ++      + + L G++Q  N L A  +   +GID  ++ E ++
Sbjct: 220 KYKDSTYKLDFNTFTTNININGNIYEYSLFGDYQYKNFLCAYEVLKYLGIDENIIKEAIK 279

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQ 396
           K+     RFE     S+   +  D AH    +E ++K ++   S   + V      D+D 
Sbjct: 280 KVVWQC-RFEVF---SKNPLVIFDGAHNPAGVEELIKIVKQHFSKDEVTVLVSILKDKD- 334

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             R  M K   +++   ++T   DNPR+   +++   +      F  + + I+A   A+ 
Sbjct: 335 --RASMFKKLNEISSSIVLTSIPDNPRASTAKELYDNV-ENKKDFEYEEDPIKAYNLALS 391


>gi|302344981|ref|YP_003813334.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella melaninogenica
           ATCC 25845]
 gi|302150216|gb|ADK96478.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella melaninogenica
           ATCC 25845]
          Length = 458

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/406 (14%), Positives = 121/406 (29%), Gaps = 29/406 (7%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
                L   +    ++T ++         +               A    +   +     
Sbjct: 57  EENVQLIPAACKEPASTLVIYTPAIPSNHAELVYFRENGFEIQKRAQVLGTLTRTHKGLC 116

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                    +S         S    +  L     I      +Y+ S     V +EA    
Sbjct: 117 FAGTHGKTTTSCMCAHLMHQSHLDCNAFLGG---ISKNYGTNYILSDHSDFVVIEADEFD 173

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
              H    ++      T+   DH+D + T++AY  +     E +    +  I    +   
Sbjct: 174 RSFH---WLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALIIRKGLE--- 227

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQV 312
              MK     G R+          H + +   +           ++  D     P    +
Sbjct: 228 ---MKPNVQEGVRIYEYSRDEGDFHAENIRIANGTITFDFVSPIENIKDIELGQPIPINI 284

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N + A  +    G  +  +   ++    V  RF+F            DYAH    +   
Sbjct: 285 ENGISAMAMAQLNGCTAEELRNGMKTYGGVDRRFDF-KIKDNRHVFLSDYAHHPKEILQS 343

Query: 373 LKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----- 425
            K+++ + + + +          R +       + AL   D  ++T+  P  E+P     
Sbjct: 344 AKSLKELYADKKVTAIFQPHLYTRTRDFYKEFAE-ALSHFDEVVLTEIYPAREEPIPGVT 402

Query: 426 -EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E I   +   +    I+K + ++ ++         DVLVV G G+
Sbjct: 403 SELIYDNLSPNVKKQMIKKDDVLDFVK-----SRNFDVLVVLGAGN 443


>gi|15834464|ref|NP_313237.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 str. Sakai]
 gi|168760482|ref|ZP_02785489.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4501]
 gi|217324395|ref|ZP_03440479.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. TW14588]
 gi|13364687|dbj|BAB38633.1| putative ligase [Escherichia coli O157:H7 str. Sakai]
 gi|189368906|gb|EDU87322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4501]
 gi|217320616|gb|EEC29040.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. TW14588]
 gi|326346707|gb|EGD70441.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. 1044]
          Length = 457

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DHWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|119717286|ref|YP_924251.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
 gi|166224710|sp|A1SL79|MURC_NOCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119537947|gb|ABL82564.1| UDP-N-acetylmuramate--L-alanine ligase [Nocardioides sp. JS614]
          Length = 446

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 138/433 (31%), Gaps = 76/433 (17%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFL------S 103
           G +   GH          A  +           S  +R + P   V+  R+ L      +
Sbjct: 60  GARVHLGHD---------AAHV---HDVDTLVVSTAVREDNPE-YVEAVRQGLRVLPRSA 106

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+ + G+    ++AV GT GK++  S +    Q +G           +++   +    
Sbjct: 107 ALAAVMAGR---RVVAVAGTHGKTTTTSLLTVALQAAGAD-PTYAIGGDLAATGVNAAEG 162

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T     L  A +  S     H S                   A   TN+  DH+D   T 
Sbjct: 163 TGD---LFVAEADESDGAFLHYS-----------------PYAAVVTNIEADHLDQWGTP 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  A    F + L  +   +  ADD  +  + +R   AG RV++V  +          
Sbjct: 203 EAYA-AAFDEFADTLAPDGFLVCVADDPGAAALAERHRAAGRRVVTVSARDA-------- 253

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                  VT+   G+ +           V     AA            +   L       
Sbjct: 254 --GALDGVTLWSPGEHYLADALAALAAGVELGYAAA-----------DLARGLASYTGTK 300

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPI 401
            R E  G  + G R+Y  YAH    +   L+  R +     +VV        R +     
Sbjct: 301 RRMERKG-EAGGVRVYDSYAHHPTEIAGDLQAARAVAGSGRVVVAFQPHLVSRTRIFGTA 359

Query: 402 MGKIALDLADIAIVTDDNPRSEDPE-KIRAEIIHGI-----PGFIEKGNRIEAIRTAIEM 455
           MG+     AD  +V D     EDP+ ++   ++ G             +        +  
Sbjct: 360 MGRALGA-ADEVVVLDVYLAREDPDPEVTGALVAGAVPLPAERVAYVADFDAVAAELVAR 418

Query: 456 LNKQDVLVVAGKG 468
               D+++  G G
Sbjct: 419 ARPGDLVLTLGAG 431


>gi|312793667|ref|YP_004026590.1| folc bifunctional protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180807|gb|ADQ40977.1| FolC bifunctional protein [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 437

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 124/393 (31%), Gaps = 45/393 (11%)

Query: 109 LYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
             G   +   ++ V GT+GK S  +F+ Q+   +G            S   +      P 
Sbjct: 36  FMGNPQKGLKVIHVAGTNGKGSTCAFINQMLIEAGFRVGLYTSPFLESFNERIKLNNQPI 95

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL-----------GRD 215
                 +++    + +  +  +  SH  +   +  I        N+             D
Sbjct: 96  DSEELASITEFVKEKIEEMLRQGFSHPTEFEVVTAIGFEFFKRKNVDFVVLEVGLGGRFD 155

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESP----AIIYADDAYSKEVMKRAHNAGCRVLSVG 271
             +  +  +      +      +   S              + +V+            + 
Sbjct: 156 ATNVIENPELCIITSIGFDHMDILGFSIEKIAFEKAGIIKQNSKVILALQRYKEVKEVIS 215

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL-------PGEFQVYNALVAAGLCIA 324
              K  + + +    N   +  +++G  FD + P              +    A     A
Sbjct: 216 KVCKEQNAQLIEVEGNYHVLKNTLDGIIFDCVTPRGIYKNLEIKLLGTHQIENALSCIYA 275

Query: 325 IGIDSALVLEHLEKLH------VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                      +E L          GRFE +        + +D AH  + ++++ +N +T
Sbjct: 276 YECLQEKYDIKIEALVKGLLNARWNGRFEVLINAPL---VILDGAHNVDGMKVLAENCKT 332

Query: 379 ITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVT----DDNPRSEDPEKIRAEII 433
             +G+ IV V G   D++  K   M  +   +A   I T         SE+ E I  ++ 
Sbjct: 333 YLNGKKIVAVVGILKDKEYEK---MISLIKSVAQRVIFTLVPYQKRAFSEE-EAI--DVS 386

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               G     +  +AIR A+ +  +   +++ G
Sbjct: 387 KRF-GLEFIADFKDAIRYALSVCEEDGAVIICG 418


>gi|238018914|ref|ZP_04599340.1| hypothetical protein VEIDISOL_00774 [Veillonella dispar ATCC 17748]
 gi|237864398|gb|EEP65688.1| hypothetical protein VEIDISOL_00774 [Veillonella dispar ATCC 17748]
          Length = 435

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 49/156 (31%), Gaps = 5/156 (3%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
              +    L       S   +          GRFE             D AH +   E  
Sbjct: 265 CALMAVRLLMKEDKSISEETMREGFARTTWAGRFEVKRGL--DRTFIFDGAHNAAGAESF 322

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
                 +       +      +D+ +  I+ ++      + +V     R+E PE +  +I
Sbjct: 323 SMTYAELFKDAPKTIVMAI-LKDKNQDAIIREVVKAGDTVLVVPAPTDRTEVPEVLVEKI 381

Query: 433 IHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
            H +P  +     +  +A+  A +     D++ V G
Sbjct: 382 RHIVPKAVAQTADSVKDALALAYKHTKNGDIIAVCG 417


>gi|74317929|ref|YP_315669.1| folylpolyglutamate synthetase [Thiobacillus denitrificans ATCC
           25259]
 gi|74057424|gb|AAZ97864.1| folylpolyglutamate synthetase [Thiobacillus denitrificans ATCC
           25259]
          Length = 422

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/395 (14%), Positives = 113/395 (28%), Gaps = 38/395 (9%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-- 151
            V   +  + L            ++ V GT+GK S  ++++ +   +G  +         
Sbjct: 28  RVRRVKDAMGLA-------PDFPLIVVGGTNGKGSTCAYLEAVFGAAGYKTGLYTSPHLL 80

Query: 152 TISSFAQDNRLTTPSPIYLAKALS------YLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             +   +           +A   +       ++       ++ A +  +       I  +
Sbjct: 81  RYNERVRIAGKEVDDADLVAAFEAVDRARGDVALTYFEFGTLAAMAQFVAAKVDVAILEV 140

Query: 206 ----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK----ESPAIIYADDAYSKEVM 257
                    N+         +        +    E +         A   A  A  +   
Sbjct: 141 GLGGRLDAVNVFDADAAIVTSVDLDHMDYLGDTREQIGFEKAGIYRAGRPAVCADPEPPA 200

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
               +AG     +   G+     +           +S        +           AL 
Sbjct: 201 SLLAHAGKVGADLRRLGRDFSAARAGERWTYHSRALSWPDLPLPAMAGPCQLRNAAGALA 260

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
                 A    S+  +        V GRF+ +G       + VD AH   +   +   +R
Sbjct: 261 VLEALQARLPTSSEAIRRGVAEARVAGRFQRIGRRPE---VIVDVAHNPEAARALASTLR 317

Query: 378 TITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIA----IVTDDNPRSEDPEKIRAEI 432
                GR + V G   D+D       G +   LAD        T D+PR+ D   + A +
Sbjct: 318 EQPISGRTLAVVGMLADKDA------GAVVAALADGVDAWWTCTPDSPRARDASSLAAVL 371

Query: 433 -IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             HG+     +     A+  A     + D ++V G
Sbjct: 372 HAHGVRSVNVQPGVKAALAAARSAAGEDDRILVFG 406


>gi|320193650|gb|EFW68285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli WV_060327]
 gi|323965623|gb|EGB61077.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli M863]
 gi|327250177|gb|EGE61896.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 457

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFDVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|326792929|ref|YP_004310750.1| FolC bifunctional protein [Clostridium lentocellum DSM 5427]
 gi|326543693|gb|ADZ85552.1| FolC bifunctional protein [Clostridium lentocellum DSM 5427]
          Length = 425

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 10/205 (4%)

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA----GLC 322
                    F  LK++  I+N  +  +            L G+ Q YNA +A      L 
Sbjct: 210 CQMQNAPLYFCDLKELTFINNTLEGQVFNYKNYQKLSIQLLGKHQCYNAALAIEVIEVLL 269

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
                  +  +         PGR + +          +D AH       +   I     G
Sbjct: 270 YLGFTIRSEAIYKGLAKANWPGRLDIIHHKPL---FLIDGAHNVQGALALRDAITYYFKG 326

Query: 383 RIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
           + I+ +FG   D+D  +   +      +A   +VT  + R+   + ++ +I +  P    
Sbjct: 327 KKIIYLFGSLKDKDYHQVLELTMPLGQIA--ILVTPPSTRAIRADLLQKQIQNYCPQVFA 384

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
                E    A+ + +++ V++  G
Sbjct: 385 AATLKEGTELALSLADEESVIIAFG 409


>gi|121603998|ref|YP_981327.1| FolC bifunctional protein [Polaromonas naphthalenivorans CJ2]
 gi|120592967|gb|ABM36406.1| FolC bifunctional protein [Polaromonas naphthalenivorans CJ2]
          Length = 453

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 115/392 (29%), Gaps = 40/392 (10%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT- 163
            A R+  K    ++ V GT+GK S  + ++ I   SG  +        +    +      
Sbjct: 49  VAGRMGLKFDCPVITVAGTNGKGSTCAMLEAILMESGYRTGVYTSPHLVHFEERCRVRGD 108

Query: 164 --------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLD 200
                                   I L        +        +     L+     RLD
Sbjct: 109 IVSATDLVANFARVESARCQNGDEISLTYFEFTTLAILQLLADAKLDVVILEVGLGGRLD 168

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + ++      +    +D+ +       A       ++    P I+         +    
Sbjct: 169 AVNILDADCAVITSIDLDHMELLGNDREAIGFEKAGIMRAGRPVIVSDPVPPQSVL---- 224

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +A      +   G+  +        +         G  +  L            L A  
Sbjct: 225 DHAARLGADLWRFGQDFNFSGDKLQWSWAGRGRRYAGLAYPALRGANQLVNASGVLAALT 284

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
                   +A  + +   L  +PGRF+ +        + +D AH  +S+  + +N+  + 
Sbjct: 285 ALRGRLPITAQAVRNGLSLVELPGRFQIIPGQPT---LVLDVAHNPHSVAALTENLDAMG 341

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPG 438
                  +FG   D+D    P++ +I   L D    TD   PR+   + + A    G   
Sbjct: 342 FYPCTHAIFGAMADKDVA--PMLARI-SPLIDKWYFTDLPTPRAATGQALLARWQAGNSR 398

Query: 439 F----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                        A+  A+   N  D +VV G
Sbjct: 399 ADATAHACQTPESALEAAVMAANPADRIVVFG 430


>gi|254510884|ref|ZP_05122951.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
 gi|221534595|gb|EEE37583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
          Length = 469

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 127/418 (30%), Gaps = 69/418 (16%)

Query: 69  EAIVVSS------AYSLQDFSATIRSNTPILVVDNTRKFLSLFA--SRLYGKHPENILAV 120
            A++VS              +A + +  P+   ++   F   FA         P  ++AV
Sbjct: 73  AALIVSPGIPHLYPVPNPVVAAALEAGVPV--DNDIGLFFRSFAGPEWHNYDTPPRVIAV 130

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+ A+ +  I   +G S+   G               +   + L          
Sbjct: 131 TGSNGKSTTAALIHHILTEAGRSAQLAGNIGRGVLDIDPGGDGSVVVLEL---------- 180

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                    SS+  +  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 181 ---------SSYQTELAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD 229

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-- 298
            +       D      +      G     V        L         ++  +S   K  
Sbjct: 230 RAVI---GIDEAEGAFLAGQLAEGPSDDRVIRVSVARKLTGPGWQVFARKGFLSEYRKGR 286

Query: 299 -----DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D   +  LPG     NA  A   C A+G+   ++ + L     +P R + +    
Sbjct: 287 QAGAIDLRDIRGLPGAHNHQNACAAYAACRALGLAPRVIEDALHNFPGLPHRSQIIAEAG 346

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQG-KRPIMGKIAL 407
               +    A   +S    L     I        +   +    G RD   K  ++G+ A 
Sbjct: 347 GVTYVNDSKATNVDSALKALNAFGKIRWICGGLEKEGGLDALNGARDHVVKAYVIGREAA 406

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             A                      +              A+  A+      +V+++A
Sbjct: 407 GFA----------------------MQLEAEAQVCTTMSAAVEQAMADAQPGEVVLLA 442


>gi|154505722|ref|ZP_02042460.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
 gi|153794019|gb|EDN76439.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
          Length = 452

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T +AY  AK ++ +    ++   + Y
Sbjct: 166 EMSSFQLET--IHTFCPKVSAILNITPDHLNRHHTMEAYIEAKEQIAKNQTEEDVCVLNY 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  +++  +R         S     K I+L+    I+ ++         +      L 
Sbjct: 224 -EDDVTRKFGERVKAQVIYFSSRRRLEKGIYLEDGNIIYCRENPEKVCHVDEL----KLL 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  +  A  +   ++ + + +   V  R EFV   +             +
Sbjct: 279 GMHNYENVMAAVAMAAAYHVPMEIIRKTIREFTAVEHRIEFVAEKNGVAYYNDSKGTNPD 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R   + G G D+D      +      +  + ++          EK
Sbjct: 339 AAIKGIQA-----MNRPTFLIGGGYDKDSSYDEWIQSFDGKVKKLVLL------GATKEK 387

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I       G    I      EA+   +E     D +++
Sbjct: 388 INETAKRLGFTDTILADTFEEAVNICVEQAEPGDAVLL 425


>gi|150390641|ref|YP_001320690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017285|sp|A6TS63|MURD_ALKMQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149950503|gb|ABR49031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
          Length = 455

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 95/301 (31%), Gaps = 24/301 (7%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +      L +     + +E SS  L+   +       G+  NL  DH++ H+T + Y 
Sbjct: 145 IGVPFIEKALDTTEEDVIVIEVSSFQLES--IKEFHPKVGTLLNLTPDHLNRHKTIENYR 202

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK+ LF     ++   + Y D        +       + +    +        V     
Sbjct: 203 EAKLNLFMNQSLQDYAVLNYDDI----TSREAGKTLAAQKIYFSRKQILEEGVFVDNQLI 258

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             Q               + G+  + NAL A  +   +G+ +  + + L     V  R E
Sbjct: 259 TIQTKEKRYDVIHIDEIKILGQHNLENALAATAMTFILGVSAEDIAKGLRNFPGVAHRLE 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV        I       +++    ++  +       I++   G D+         K   
Sbjct: 319 FVEEIEGVKYINDSKGTNTDASIKAIEAAQA-----PIILLAGGQDKGGDFT-DFVKAFD 372

Query: 408 DLADIAIV---TDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 +V   T DN        I    + +      +  +  EA+  A  +    D ++
Sbjct: 373 GKVKHLLVYGETSDN--------IYETALHNNFKVVSQVRDLEEAVIRAKGIAQAGDTIL 424

Query: 464 V 464
           +
Sbjct: 425 L 425


>gi|320093974|ref|ZP_08025801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979080|gb|EFW10596.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 457

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 136/408 (33%), Gaps = 38/408 (9%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +VVS+A    +            VV  + + L+L A+ +        + V G  GK++
Sbjct: 68  AVVVVSTAIRESNPELAAARGRGQRVVHRS-EALALAATGM------RFVGVAGAHGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +  +    +  G           +  F     L            S  S    +     
Sbjct: 121 TSGMLAVALRSVGADPSVA-VGGVVPQFGSGAHLGAGDVFVAEADESDGSFLNYS----- 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH+D + +++A+  A    F   L      +  A
Sbjct: 175 ---------------PSVEVVTNVEPDHLDRYGSREAFE-AVFAEFASRLVPGGALVACA 218

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-----LKKVCAIHNKQQVTISVEGKDFDFL 303
           +D  +  +   A   G   ++ G  G+        ++ V +  +     +  +G+     
Sbjct: 219 EDPGASRLASHARERGITTITYGRPGRCAQRPDAAIEDVDSTASGSTARVEWDGQAAVLR 278

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + GE  V NA  A     A+G+    +   L        RFE  G      R++ DYA
Sbjct: 279 LAVAGEHNVLNATAALLAGAALGLGLPEMAAGLASFTGTARRFEERG-RVGSRRLFDDYA 337

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-RPIMGKIALDLADIAIVTDDNPRS 422
           H    +   L+  R +     + V        + +        AL  AD  +VTD     
Sbjct: 338 HHPTEVAAALRQARVVAGAGGVTVVFQPHLYSRTRIFAARFAEALAAADHVVVTDVYAAR 397

Query: 423 EDPEKIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           EDPE       I   +PG +   +  EA RT   ++++  +L+  G G
Sbjct: 398 EDPEPGVDSTLITSALPGSLHVPDMHEAARTGAGLVDEGGILITMGAG 445


>gi|261392934|emb|CAX50519.1| FolC bifunctional protein [includes: folylpolyglutamate synthase
           (folylpoly-gamma-glutamate synthetase; FPGS;
           tetrahydrofolate synthase; tetrahydrofolylpolyglutamate
           synthase) and dihydrofolate synthase] [Neisseria
           meningitidis 8013]
          Length = 424

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 125/397 (31%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVGEVKKRMKLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAINAEPVSDDTITASFERIEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +    G    +    +D+          ++   +  + +     I   +     ++ 
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRGGKPAICGQNPAPASLLS 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V    +F  L+ +   + + +   S          P P     Y    A
Sbjct: 203 HAEAIGAKLLMVQRDFEFHALENIQ-WNYRFRPQHSDSPARNRNSLPFPALRGAYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +   +  +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACALTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ 
Sbjct: 319 RRSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQN 375

Query: 431 EIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++    I          EA R A     + D +VV G
Sbjct: 376 KLHEHSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|91776048|ref|YP_545804.1| FolC bifunctional protein [Methylobacillus flagellatus KT]
 gi|91710035|gb|ABE49963.1| FolC bifunctional protein [Methylobacillus flagellatus KT]
          Length = 432

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 110/384 (28%), Gaps = 36/384 (9%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT-- 164
            RL       IL V GT+GK S  + ++ I Q +G           +    +        
Sbjct: 38  QRLCLDPQFPILIVAGTNGKGSTCAMLESIYQAAGYRVGCYTSPHFVRYNERVRIGGIEV 97

Query: 165 --------PSPIYLAKAL-----------SYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
                      I  A+             + + S    +V +     GL   RLD + + 
Sbjct: 98  EDEVLVKAFEAIEQARHETTLTYFEFGTLAAVWSMVEANVDMAILEVGLG-GRLDAVNVF 156

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
           +   + +    +D+            R    +  +  PAI   D                
Sbjct: 157 SPVCSIVTSVDLDHMDFLGNDRECIGREKAGVFRRGIPAICGDDQPPLSLQAYATDIGAD 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             L                  +  +  + +     +F             + A    + I
Sbjct: 217 LRLIGREFSFQPQGTDWRYRSSTHEYLLPLPALAGEFQLNN-----AACVINAVDALLGI 271

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRI 384
              +   ++   +   + GRF+      +   + +D AH  ++   +  N+      GR 
Sbjct: 272 LPVTLEHIQQGLQRVALNGRFQLCRHQPQ---VILDVAHNPHAAWALASNLVQHPVVGRT 328

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPG-FIEK 442
           + VF    D+D      + +      D   +    + R  +  ++R  +           
Sbjct: 329 LAVFSMLADKDI---KGVVQATAPHVDAWYIAKVAHGRGAEASQLRDSVAQASSRQVSMH 385

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            + I A R A     + D ++V G
Sbjct: 386 ADVIAAYRQACNDAGENDRIIVFG 409


>gi|294852759|ref|ZP_06793432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
 gi|294821348|gb|EFG38347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
          Length = 467

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|224476285|ref|YP_002633891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254766056|sp|B9DPR3|MURD_STACT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222420892|emb|CAL27706.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 449

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 117/353 (33%), Gaps = 48/353 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  +  +S  +    G    ++S                   
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFDKSRQTGLLSGNIGYVASKV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGL---DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
               ++   ++  E SS  L   +Q+R           TN+   H+DYH T + Y NAK 
Sbjct: 154 -AQEAKPEDYLITELSSFQLLGIEQYR-----PHIAIITNIYSAHLDYHGTLEEYRNAKR 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R+++     +     Y      + +++              Q       K   I      
Sbjct: 208 RIYKNQTEDDFLICNYNQ----RHLIETDGLKSKVYYFSTSQEVDGIYVKDGYIMLNGLR 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I  +         L       N L A    +  G+    V+  L     +  R +++G+
Sbjct: 264 LIHKDDIVLPGEHNL------ENILAAVLAAVLGGVSIDAVIATLTSFSGIKHRLQYIGS 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N          A  + + +  L +       + I+    G DR  G   ++  +      
Sbjct: 318 NKTNKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNGFDELIPYMKNV--- 369

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++T      E  +K+           I   +  +A+     ++   DV+++
Sbjct: 370 RVMIT----FGETQDKLTKLGESQGKYVIRATDVKDAVDKVQNVIEPNDVVLL 418


>gi|168333725|ref|ZP_02691978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 456

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 144/426 (33%), Gaps = 59/426 (13%)

Query: 58  LFIP---QAI----AQGAEAIVVSSAYSLQDFSATI-----RSNTPILV------VDNTR 99
            F     QA+     +G +  +      + D    I       + PI+       V+   
Sbjct: 36  DFADXTKQALIDLENKGVKLFLGKRDSYIDDIEKIIVSPGVPLDIPIIEHYRKENVNIVG 95

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +F   FA+         IL +TGT+GK++  + V +I +     +F +G       F+++
Sbjct: 96  EF--EFAATFCKAP---ILGITGTNGKTTTTTLVGEIFKAYNPKTFVVGNIGCA--FSEE 148

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            +  T   + +A                E SS  L+   ++ +     S  N+  DH++ 
Sbjct: 149 VQDITADSVVIA----------------ELSSFQLET--IETLSCQICSILNITPDHLNR 190

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y  A      E   K    I+  +DA   +++ +         S     K ++L
Sbjct: 191 HGTMENY-MAAKYRIFENGGKNVKVILNKEDAELAKLIGKTGKTELLFSSKESVEKGVYL 249

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +    + N       +          + G     NAL A  +  A G+   ++   L   
Sbjct: 250 ENGALVDNTLGDNFVICN---IDELHILGVHNYENALAAILMARAYGVPREIIRSVLLDF 306

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  R E+V T S         A    +    L  +++      I + G G D+     
Sbjct: 307 RGVAHRIEYVTTVSDVKFYNDSKATNVGAAVPGLLAMQS-----KIRLIGGGLDKHIEFD 361

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNK 458
             +      +A + I+       E   +I       G   +       EAI+ A     +
Sbjct: 362 EWVELFEGRVAKLYII------GETTNQIIETCKKHGFHNYEAFETFEEAIKAAYNEAKR 415

Query: 459 QDVLVV 464
            + +++
Sbjct: 416 GEXVLL 421


>gi|332976299|gb|EGK13157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Desmospora sp.
           8437]
          Length = 386

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 111/351 (31%), Gaps = 36/351 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
            +++ +TG++GK++  S V ++  R G+ +   G      S                   
Sbjct: 44  ASMIGITGSNGKTTTTSLVGRMLARGGIPARVAGNIGMALSEVAPG-------------- 89

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                     +  E SS  L   R    +   G+  NL   H+DYH + + Y  +K +LF
Sbjct: 90  ----MDQEEWLISELSSFQLKGTRQF--RPRIGALLNLVPAHLDYHGSMEDYLESKGKLF 143

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               P +   +    D       + A      V     Q        V       ++   
Sbjct: 144 ANQQPGDIAVLNRDSDVC----RRLAPQLRGDVWWFSRQEPVDRGLMVKQGWVTARLPDG 199

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E               + NAL A+ + +A G  +  + E L     V  R EFV T   
Sbjct: 200 EELSLLPASQVRLPGIHMENALAASAIALAAGCPADALREELRTFTGVEHRLEFVATVDG 259

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A    +    +++         IV+   G DR    R ++      L    I
Sbjct: 260 VRYYNDSKATNGKAATSAMESFTE-----PIVLIAGGLDRGVDFRELVPVFQKRL--KGI 312

Query: 415 VTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           VT      E  + +        +P         +A+  A  +    DV+++
Sbjct: 313 VT----YGEAGDVLLKRAEEASVPLRERAEEIADAVTRASRLAAAGDVVLL 359


>gi|332083234|gb|EGI88465.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 457

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVSGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|257464232|ref|ZP_05628611.1| dihydrofolate synthase [Fusobacterium sp. D12]
          Length = 409

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 116/356 (32%), Gaps = 25/356 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY------ 169
            I+ + GT+GK S  + +++I   +G    +      +    +                 
Sbjct: 34  KIIHIAGTNGKGSTTTTLEKILLEAGYRVGKYTSPHILKFNERIVANGVQISEEEIEYYY 93

Query: 170 -----LAKALSYLSSQGVTHVSVEAS---SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                + K     ++      ++  S     GLD   L+         TN+    +    
Sbjct: 94  YQVEKIMKEEKIDATFFEITTAMMFSYFRDKGLDYVVLETGMGGRLDATNVSEAILCIIT 153

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    +      + KE   II           +                       
Sbjct: 154 NVSLDHTEYLGDSIYKIAKEKAGIIKNCPKVIVADQQEEFLQAILEEKAELINVLNKYAD 213

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                + +     ++ +   + F L G++Q +N L A      +GI   ++ +  EK+  
Sbjct: 214 AHYTLDFENFVTHIDIEGKQYRFSLFGDYQYHNFLCAYEAAKQLGISEDIIQKAAEKVRW 273

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRP 400
              RFE V        + +D AH  + +  ++K ++     R + +      D+D     
Sbjct: 274 EC-RFEVVSKEPL---VILDGAHNPDGVRELVKIVKQHYQKREVAILTSILRDKDV---K 326

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            M ++  +++D  ++T  DDNPR    E++   I++    F  + N   A    I+
Sbjct: 327 TMLEMMTEISDDILLTSLDDNPRGSTAEELF-HIVNQPAIFSIEENMKRAYDKLIK 381


>gi|110639121|ref|YP_679330.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
 gi|122966617|sp|Q11RH6|MURC_CYTH3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110281802|gb|ABG59988.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 466

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 104/323 (32%), Gaps = 31/323 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + + GT GK++ +S    I   SG+                     T   I      +
Sbjct: 113 KTIGIAGTHGKTTTSSMAAHIMHESGMPCSAF-------LGGITQNYNTNILIGNHGDGA 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          +   +  R    +        N+  DH+D +   Q+++++     
Sbjct: 166 GWVV-----------AEADEYDRSFLQLSPDIAVINNMDPDHLDIYSDVQSFYDSFNEYL 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           ++L P          D      ++   +A   V           ++ V         +I 
Sbjct: 215 KKLKPGGIVIRRVDVD------VQIPSHASLSVTFGESVEADYRIQNVVVEDGGVTFSID 268

Query: 295 VEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +   ++     +PG   V NA  A       G+    +   L     V  RFE     +
Sbjct: 269 HDFTRWNNIRIEMPGMHNVMNATAAFLAAHFAGVSIDSIKASLRSFGGVKRRFE-YIYKN 327

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--D 411
                  DYAH    LE +LK +R +  G+ +V         +  R  M + A  LA  D
Sbjct: 328 TKLVYVDDYAHHPTELEALLKAVRMVFPGKKVVTVFQPHLFSRT-RDFMQEFAQSLALTD 386

Query: 412 IAIVTDDNPRSEDP-EKIRAEII 433
             ++ +  P  E P E I ++++
Sbjct: 387 ELLLMEIYPARELPIEGITSDVL 409


>gi|218767816|ref|YP_002342328.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria meningitidis Z2491]
 gi|121051824|emb|CAM08130.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria meningitidis Z2491]
          Length = 424

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 124/397 (31%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++ QI +++G     +     +    +
Sbjct: 24  LERVGEVKKRMKLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAVNAEPVSDDTIIASFERIEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +    G    +    +D+          ++   +  + +     I   +     ++ 
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPASLVA 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V    +F  L+ +   + +     S +        P P     Y    A
Sbjct: 203 HAEAIGAKLLMVQRDFEFHALENIQ-WNYRFHPQHSDDPTRNRNALPFPALRGAYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +   +  +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACTLTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ 
Sbjct: 319 RRSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQN 375

Query: 431 EIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++    I          EA R A     + D +VV G
Sbjct: 376 KLHEHSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|120555362|ref|YP_959713.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
 gi|189028998|sp|A1U3F7|MURC_MARAV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120325211|gb|ABM19526.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 481

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 92/284 (32%), Gaps = 20/284 (7%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +  +    TN+  DH+D +             F   LP    A++  DD Y +E++ R 
Sbjct: 184 HLTPVISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCVDDDYVQEIIPRI 243

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVA 318
                    +         + + +   K +  +   G   D      +PG   V NAL  
Sbjct: 244 SR-AIITYGIDNPDADYRAENITSDGLKTRFLVRRPGGRPDLQVELKMPGRHNVLNALAT 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKN 375
             +    G+D   +   L     V  RF+  G          +  DY H    +E +++ 
Sbjct: 303 IAVATDEGVDDQAICRGLAGFAGVGRRFQVYGEYRTPKAAATLVDDYGHHPTEVEAVIRA 362

Query: 376 IRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEK 427
            R     R IV+        R +       ++  +  D  ++ D     E      D   
Sbjct: 363 AREAWPQRRIVMLYQPHRYTRTRDLYEDFVRVLSE-VDGLLLMDVYSAGEPAIPGADGRA 421

Query: 428 IRAEIIH--GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +   I     +     + NR   I + +   L   D+L+  G G
Sbjct: 422 LCRSIRQRGKVEPVFVEDNRE--IESLLANVLQDGDLLITQGAG 463


>gi|332678415|gb|AEE87544.1| Cyanophycin synthase II [Francisella cf. novicida Fx1]
          Length = 561

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 119/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDELIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKE------------VMKRAHNAGCRVLSVGYQGKF 276
           A+ +        +    I   D    +            V +       +          
Sbjct: 283 AEAKSIVFRALGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYAC 342

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I               + +   +         +  + NA++A  L   +GI   ++ + L
Sbjct: 343 IVEDGNFVWVEANSKKVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   +     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|313903532|ref|ZP_07836922.1| FolC bifunctional protein [Thermaerobacter subterraneus DSM 13965]
 gi|313466085|gb|EFR61609.1| FolC bifunctional protein [Thermaerobacter subterraneus DSM 13965]
          Length = 474

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRP 400
            PGR E V     G  I++D AH    +  + + +  +   R +V V G   D+D  K  
Sbjct: 332 WPGRMERVRWR--GREIWLDGAHNPAGMAALARTVAALWPDRRVVLVAGMLDDKDVEKAA 389

Query: 401 IMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                    A +   T+  +PR+   E++   +         +   + A+  A++     
Sbjct: 390 AAIAPVAARAVV---TEPPSPRAARAERLAGALAAHGVAVAVQREPLAALERALQEAGPG 446

Query: 460 DVLVVAG 466
             ++V G
Sbjct: 447 QPVLVCG 453


>gi|113869228|ref|YP_727717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           eutropha H16]
 gi|113528004|emb|CAJ94349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ralstonia eutropha
           H16]
          Length = 503

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G     NA+ A  LC AI +    +L  L +    P R E+V T             
Sbjct: 320 HIRGMHNATNAMAALALCRAIDLPMNALLHGLREYRGEPHRVEWVATIDDVEYFDDSKGT 379

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +    L  +      + +V+   G  + Q   P+   +A   A   ++         
Sbjct: 380 NVGATVAALSGLD-----KRVVLIAGGEGKGQDFSPLAAPVA-QYARAVVLI-----GRA 428

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R  +       ++ G   EA+  A  +    DV+++
Sbjct: 429 AGELRDALQGSGASLVDAGTLEEAVTKAAGLAESGDVVLL 468


>gi|62290326|ref|YP_222119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700250|ref|YP_414824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|189024559|ref|YP_001935327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237815833|ref|ZP_04594830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|254689627|ref|ZP_05152881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 6 str. 870]
 gi|254697769|ref|ZP_05159597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730658|ref|ZP_05189236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 4 str. 292]
 gi|256257877|ref|ZP_05463413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 9 str. C68]
 gi|260546868|ref|ZP_05822607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260755155|ref|ZP_05867503.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758374|ref|ZP_05870722.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762200|ref|ZP_05874543.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884168|ref|ZP_05895782.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297248713|ref|ZP_06932431.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
 gi|75496533|sp|Q57C76|MURD_BRUAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595643|sp|Q2YM69|MURD_BRUA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62196458|gb|AAX74758.1| MurD, UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616351|emb|CAJ11408.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Pyridine
           nucleotide-disulphide oxidoreductase, class
           I:Folylpolyglutamate s [Brucella melitensis biovar
           Abortus 2308]
 gi|189020131|gb|ACD72853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237789131|gb|EEP63342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|260095918|gb|EEW79795.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260668692|gb|EEX55632.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672632|gb|EEX59453.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675263|gb|EEX62084.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873696|gb|EEX80765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297175882|gb|EFH35229.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
          Length = 467

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|320531623|ref|ZP_08032565.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136152|gb|EFW28158.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 524

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRI 384
           + A +   L        RFE  G  + G R+  DYAH    +E +L+  R +     GR+
Sbjct: 345 EPARMARALGVFGGTGRRFEDRG-EADGVRVIDDYAHHPTEIEALLRTARGVAQERGGRV 403

Query: 385 IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED----PEKIRAEIIHGIP-- 437
           +V+F      R +      G+ AL LAD  +VTD  P  E     P      +   +P  
Sbjct: 404 LVLFQPHLFSRTRAFADRFGQ-ALALADAVVVTDVYPARETQADFPGVTGDTVAQRVPGG 462

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  R++A R   +     D+L+  G G
Sbjct: 463 RARFVAERLDAARAVADSARPGDLLLTVGAG 493


>gi|240949193|ref|ZP_04753537.1| folylpolyglutamate synthase/dihydrofolate synthase [Actinobacillus
           minor NM305]
 gi|240296309|gb|EER46953.1| folylpolyglutamate synthase/dihydrofolate synthase [Actinobacillus
           minor NM305]
          Length = 431

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 118/378 (31%), Gaps = 29/378 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ V GT+GK S   F++    ++GL+         I    +             
Sbjct: 46  NPAPYVITVAGTNGKGSTCRFLEVALLKAGLTVGVYSSPHLIRYNERVRINGDVLADQFH 105

Query: 172 KALSYLSSQGV-----THVSVEASSHGLDQHRLDGIKL------IAGSFTNLGRDHIDYH 220
                  ++              S+  L ++    + +           TN+   H+   
Sbjct: 106 IQSFADINEKKTASLTYFEFSTLSALQLFKNAKLDVVILEVGLGGRLDATNIVDPHLAVI 165

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +      A +    E + +E   I          V+         +         +  +
Sbjct: 166 TSIDIDHVAFLGDNREDIGREKAGIFREHIPV---VIGEPDCPNSILTHAKQLQCHVMQR 222

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEKL 339
            V   +  +  + S +  D  F+        + NA  A      +  +    V+      
Sbjct: 223 DVDWHYFVKAESFSWKALDQQFVDLPMPLIPIPNAGTAIATLTQLPFNISEQVIRETLSE 282

Query: 340 HVVPGRFEFVGTNSRGGRI--------YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
             + GRF+ + T+               +D  H  ++   + + ++ +  G+I  +F C 
Sbjct: 283 AQMTGRFQTLTTSDFAQFSGIIPKAKVIIDVGHNPHAARYLAERLQAVKKGKIFAIFSCL 342

Query: 392 GDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEA 448
            D++      + +   +L D    V  D  R +  E +  +++  +P        N  +A
Sbjct: 343 EDKELSG---IVEPLDNLIDEWFCVGLDCWRGQRGEAVLEKLVKSLPNATACAYENIAQA 399

Query: 449 IRTAIEMLNKQDVLVVAG 466
              A     +QD+++V G
Sbjct: 400 TPIAFNQAKEQDIVLVFG 417


>gi|229525614|ref|ZP_04415019.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           bv. albensis VL426]
 gi|229339195|gb|EEO04212.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           bv. albensis VL426]
          Length = 421

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 104/365 (28%), Gaps = 16/365 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +           + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINGQDLADEIH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    +S+     G    L       + ++       GR             
Sbjct: 106 TQAFAHIEQERGDISLSLFEFGTLAALYLFEQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +         +   +   F         +     A  L        A+   ++       
Sbjct: 226 QFSYEKTSATTWNWRSGRFELTDLPFPSLPLPNAATALMALGCSGLAISDINIVDGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   S    I +D AH  +S   +++ +      R I +VFG   D+D      +
Sbjct: 286 QLAGRMQVISHQPTIVLDVAHNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD------I 339

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
               ++L+           S       A++   +P    +  N + A   A+     QDV
Sbjct: 340 ASTVVELSPAVTHWYPASLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDV 399

Query: 462 LVVAG 466
           +VVAG
Sbjct: 400 IVVAG 404


>gi|227510539|ref|ZP_03940588.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190191|gb|EEI70258.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 443

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 91/294 (30%), Gaps = 33/294 (11%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +      TN+  DH DY++      +A      +          + DD   +++  + 
Sbjct: 163 ATEPDYAIMTNIDFDHPDYYKNIDDVQDAFQTFANQTKKG---IFAWGDDKRLRQLKAKV 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                                V          +  +GKD  +F  PL GE  ++N+L   
Sbjct: 220 P----IYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPLFGEHNIFNSLAVI 275

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +  +  +D   +   L+    V  RF     +  G  I  DYAH    ++  +   R  
Sbjct: 276 AVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS--GMTIIDDYAHHPTEIKATIDAARQE 333

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
              + I V        +    +M   A   +LAD   +T    +PR    +    ++   
Sbjct: 334 YPSKKIAVVFQPHTFSRTI-ALMDDFAKSLNLADEVFLTQIYSSPRESSGKVSSEDLSKK 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGKGHETVHIVTNGEKKMSV 484
           I       +         + ++       DV++  G G      +   EK    
Sbjct: 393 ITKGGRILS--------ADNMSPLLDYDNDVIIFMGAG-----DIQKYEKTYED 433


>gi|283796967|ref|ZP_06346120.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
 gi|291075380|gb|EFE12744.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
          Length = 465

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 126/426 (29%), Gaps = 46/426 (10%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVV-----DNTRKFLSL------FASRL---- 109
           ++GA   +   A +++    T +    ++       DN     +        +  +    
Sbjct: 52  SRGAVIYIGQRAENIRQAEQTGKKIDAVVYTAAIHPDNPEFAAAREAGLPMLSRAVLLGE 111

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
             ++    +AV+GT GK++  S + +I      +   I     + S   + R+  P    
Sbjct: 112 MMRNYREAIAVSGTHGKTTTTSMLSEIF-LVAEADPTISVGGILPSIGGNIRVGGPEFFI 170

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                   S                                N+  DH+D+ +       +
Sbjct: 171 TEACEYTNSFLEFF--------------------PTIEVILNIEEDHMDFFKDLADIR-S 209

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F +  PK+   +I  +    +E++K          +              ++    
Sbjct: 210 SFTRFAKKTPKQGAVVINGEIEDWQEIVKNTEGRVITFGTDRGFDYSAGEISYDSLARPT 269

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   K       + GE  VYNAL AA   +  G+    V   L        RFE  
Sbjct: 270 FDFYIRGEKRDTLSLGVSGEHNVYNALAAAAAALEAGLSLEAVKRGLLSFTGTKRRFEKK 329

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALD 408
           G  + G  I  DYAH    +   LK  +     RI  VF      R +       + AL 
Sbjct: 330 GVLN-GVTIIDDYAHHPQEIRASLKTAQNYPHNRIWCVFQPHTYTRTKAFLDEFAE-ALS 387

Query: 409 LADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +AD  ++ D     E          I  +I              E      +     D+L
Sbjct: 388 MADCIVLADIYAARETDTLGISSRDIAEKIERLGKKVWYFHTFEEIEEFLKKSCIHGDLL 447

Query: 463 VVAGKG 468
           +  G G
Sbjct: 448 ITMGAG 453


>gi|28493196|ref|NP_787357.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei str.
           Twist]
 gi|28476237|gb|AAO44326.1| UDP-N-acetylmuramate--alanine ligase [Tropheryma whipplei str.
           Twist]
          Length = 475

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 133/435 (30%), Gaps = 51/435 (11%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP---------E 115
             GA   V      L+     + S    +   N     +  A                 +
Sbjct: 57  QAGAIVKVGHDPAMLEGVDTFVYSGA--IDSSNPEYAYAERARINLLHRSLALKWITRGK 114

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++++ G+ GK+S  + +       G         S ++ F+ +  L       L    +
Sbjct: 115 RLISIAGSHGKTSTTAMIATALHVLGNKCGVA-NGSYMNFFSANALLGLND---LFVIEA 170

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S         + S                    N+  DH+DY+ +Q A   +     +
Sbjct: 171 DESDGSFLFYDTDIS-----------------VVNNISMDHVDYYGSQSALEGSFF---D 210

Query: 236 ELLPKESPAIIYADDAYSKEVMKR------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
             L     A+I  DDA   ++  +      +     RV++ G               N  
Sbjct: 211 FSLRSSDAAVISLDDAACIKIASKLLQSSGSRGPSKRVITFGKNRSADVCLYEMGCMNPA 270

Query: 290 QVTISVEGKDFDFLFPLPGEFQVY-NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + T+  EG+ ++  F          N   A  + + +G   +  LE +        R E 
Sbjct: 271 RFTVLYEGRFYNAGFKGLFGEHHAVNTCAALSVLLCLGYGISESLEAILSFSGTRRRLEL 330

Query: 349 VGTN--SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKI 405
              +    G +I+ DYAH    +   L  IR++   R+I +F      R          +
Sbjct: 331 HFDSGGKDGIKIFDDYAHHPREIRTALTAIRSVQHTRLIALFQPHLYSRTAALHREFASV 390

Query: 406 ALDLADIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             + AD  I+       E P      KI  +        +        +    + L   D
Sbjct: 391 LENCADFTIILPVYAARESPIPGVDAKIIFDAYRDKRNVVMLEGFDHTLSFFRQFLRDGD 450

Query: 461 VLVVAGKGHETVHIV 475
           +++  G G +   I+
Sbjct: 451 LVITLGCG-DVYKII 464


>gi|317125336|ref|YP_004099448.1| FolC bifunctional protein [Intrasporangium calvum DSM 43043]
 gi|315589424|gb|ADU48721.1| FolC bifunctional protein [Intrasporangium calvum DSM 43043]
          Length = 462

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGK 398
              PGR E V  +     + VD AH  +    ++  +    T  R++ + G   D+D   
Sbjct: 318 MTSPGRLEVVRRSPT---VLVDAAHNPHGARSLVAALDEAFTFTRLVGLVGIVADKDAT- 373

Query: 399 RPIMGKIALDLADIAIVT-DDNPRSEDP---EKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              + +      D  ++T   +PR+  P     + A+I  G      + N  EA+  AI 
Sbjct: 374 --AILEALEPRLDHVVITRSSSPRALSPVQLGALAADIF-GESRVTVESNLPEALDRAIG 430

Query: 455 MLNK---QDVLVVAG 466
           +  +      ++V G
Sbjct: 431 LAEEEGMGGGVIVTG 445


>gi|116750887|ref|YP_847574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699951|gb|ABK19139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 446

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 111/357 (31%), Gaps = 37/357 (10%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             + +    ++AVTGT+GK++  + + ++ + SG   F  G               TP  
Sbjct: 98  WAWRQVDAPVIAVTGTNGKTTTTALIGEMIKASGTRVFVGGNIG------------TPLS 145

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
            +L                +E SS  LD   L   +   G   N+  DH+D ++  + Y 
Sbjct: 146 RWLLDGDRVDCM------VLEVSSFQLDTAFLF--RPEVGVLLNVTEDHLDRYRDFEEYT 197

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                           A+I  DD                      +           ++ 
Sbjct: 198 -ESKLSMFGRQESTDVAVINLDDPVCGSRPFNGKGRLLTSSRNDPRTHAHVEDGRIVVNV 256

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +    ++  D        G     N L A   C+A+ +    V         +P R E
Sbjct: 257 PWKPEFRLDLADLRLK----GVHNEENVLAAILACLAMDVVPEAVARAAGTFGGLPHRVE 312

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +V                  ++   ++N       R +++   G D+     PI  ++  
Sbjct: 313 WVRAAGGVDYYDDSKGTNVGAVVKAIENFD-----RPVLLLLGGRDKLGSYAPIAERMRT 367

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               + +  +  PR      I AE+   +P      +   A   A+E     D++++
Sbjct: 368 RGKGVFVFGESAPR------IHAELRDKVP-IRLFPDLEGAFSAAVERAQAGDIVLL 417


>gi|307544553|ref|YP_003897032.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
 gi|307216577|emb|CBV41847.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
          Length = 507

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 145/445 (32%), Gaps = 54/445 (12%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTG 122
           A+ A+ +VVS+A    +          I VV   R+   L+      +G      +AV G
Sbjct: 98  ARDADVVVVSTAVDETNPEIRWAQQHRIPVV---RRAEMLAELMRFRHG------IAVAG 148

Query: 123 TSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           T GK++  S    +    G   +F IG    ++S   + RL     +      S  S   
Sbjct: 149 THGKTTTTSLTATLLGEGGLDPTFVIG--GRLTSAGVNARLGEGDYLVAEADESDASFLH 206

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                               ++ +    TN+  DH+  +             F   LP  
Sbjct: 207 --------------------LQPMVAIVTNIDADHMATYGGDFERLKGTFIEFLHNLPFY 246

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DDA  + +++R +               +                       +
Sbjct: 247 GLAVLCIDDANVRGLIERVNRQFVTYGFSEDADYRLENFVQHGGEVSFIARRPDGLAPLE 306

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----- 356
               +PGE    NA+ A  +    G++ A +L  L     V  RF+  G  +        
Sbjct: 307 VRLAMPGEHNALNAMAAIAVASDAGVEDAAILRGLASFAGVGRRFQVHGHFASPQGEGEV 366

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAI 414
            +  DY H    +EM++K +R     R +V+        + +       ++     D  +
Sbjct: 367 MLVDDYGHHPREVEMVIKAVREGWPERRLVMLYQPHRYSRTRDLFEDFVRVLA-GVDTLL 425

Query: 415 VTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           + D     E P        +   I   G    I   ++ E      ++L   D+L+  G 
Sbjct: 426 LLDVYSAGESPLPGADGRTLAGSIRQRGEVDPIFVQDKSELPELLAKVLRPGDILITQGA 485

Query: 468 GHETVHIVTNGEKKMSVDCDIIREI 492
           G      V    +K+S    ++ E+
Sbjct: 486 G-----DVGGISQKLSDARLVLDEV 505


>gi|219870392|ref|YP_002474767.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
 gi|254766005|sp|B8F3B7|MURC_HAEPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219690596|gb|ACL31819.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
          Length = 475

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 72/440 (16%), Positives = 140/440 (31%), Gaps = 54/440 (12%)

Query: 47  VAIVGNKEDGHLFIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFL 102
           +A  G K     FI        GA  +V SSA +  +           P++      + L
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPVIQRA---QML 111

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +      +G      +A+ GT GK++  + +  I   +GL    +     + S  ++  L
Sbjct: 112 AEIMRFRHG------IAIAGTHGKTTTTAMISMIYTEAGLDPTFV-NGGLVKSAGKNAHL 164

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                     A +  S     H+    S                   TN+  DH+D +  
Sbjct: 165 G---ASRYLIAEADESDASFLHLQPMVS-----------------VVTNIEPDHMDTYGG 204

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                      F   LP    A++ ADD    E+  +                   ++  
Sbjct: 205 DFEKMKETYVRFLRNLPFYGLAVMCADDETVMEIAPKVGRQVISYGFSEKADY--RIEDY 262

Query: 283 CAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +   T+     +  + L  +PG     NA  A  +    GI +  +L  L     
Sbjct: 263 QQTGFQGHYTVVCPTGERIEILLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQG 322

Query: 342 VPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              RF+ +G+  R      +  DY H    +++ +K  R     + +V+        + +
Sbjct: 323 AGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTR 382

Query: 399 R--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAI 449
                  ++     D  I+ +     E P      + +   I + G    I   +  +  
Sbjct: 383 DLFDDFVQVLSQ-VDALIMLNVYAAGEAPIVGAESKDLCRSIRNLGKVDPILVSDTSQLG 441

Query: 450 RTAIEMLNKQDVLVVAGKGH 469
               +++   D+++  G G+
Sbjct: 442 EVLDQIIQDGDLILAQGAGN 461


>gi|23502304|ref|NP_698431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           1330]
 gi|148559574|ref|YP_001259326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ovis
           ATCC 25840]
 gi|161619381|ref|YP_001593268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           canis ATCC 23365]
 gi|225852915|ref|YP_002733148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis ATCC 23457]
 gi|254694117|ref|ZP_05155945.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 3 str. Tulya]
 gi|254702154|ref|ZP_05163982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 5 str. 513]
 gi|254704691|ref|ZP_05166519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 3 str. 686]
 gi|256061490|ref|ZP_05451634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           neotomae 5K33]
 gi|256113986|ref|ZP_05454769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263604|ref|ZP_05466136.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260566062|ref|ZP_05836532.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|261214417|ref|ZP_05928698.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261325497|ref|ZP_05964694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261752724|ref|ZP_05996433.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261755384|ref|ZP_05999093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|265995328|ref|ZP_06107885.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|30316052|sp|Q8FZP2|MURD_BRUSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23348281|gb|AAN30346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis
           1330]
 gi|148370831|gb|ABQ60810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ovis ATCC
           25840]
 gi|161336192|gb|ABX62497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella canis
           ATCC 23365]
 gi|225641280|gb|ACO01194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis ATCC 23457]
 gi|260155580|gb|EEW90660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|260916024|gb|EEX82885.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261301477|gb|EEY04974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261742477|gb|EEY30403.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261745137|gb|EEY33063.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|262766441|gb|EEZ12230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263093655|gb|EEZ17660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326409457|gb|ADZ66522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis M28]
 gi|326539163|gb|ADZ87378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis M5-90]
          Length = 467

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|295089862|emb|CBK75969.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 465

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 126/426 (29%), Gaps = 46/426 (10%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVV-----DNTRKFLSL------FASRL---- 109
           ++GA   +   A +++    T +    ++       DN     +        +  +    
Sbjct: 52  SRGAVIYIGQRAENIRQAEQTGKKIDAVVYTAAIHPDNPEFAAAREAGLPMLSRAVLLGE 111

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
             ++    +AV+GT GK++  S + +I   +      I     + S   + R+  P    
Sbjct: 112 MMRNYREAIAVSGTHGKTTTTSMLSEIFLAAEAD-PTISVGGILPSIGGNIRVGGPEFFI 170

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                   S                                N+  DH+D+ +       +
Sbjct: 171 TEACEYTNSFLEFF--------------------PTIEVILNIEEDHMDFFKDLADIR-S 209

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F +  PK+   +I  +    +E++K          +              ++    
Sbjct: 210 SFTRFAKKTPKQGAVVINGEIEDWQEIVKNTEGRVITFGTDRGFDYSAGEISYDSLARPT 269

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                   K       + GE  VYNAL AA   +  G+    V   L        RFE  
Sbjct: 270 FDFYIRGEKQDTLSLGVSGEHNVYNALAAAAAALEAGLSLEAVKRGLLSFTGTKRRFEKK 329

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALD 408
           G  + G  I  DYAH    +   LK  +     RI  VF      R +       + AL 
Sbjct: 330 GVLN-GVTIIDDYAHHPQEIRASLKTAQNYPHNRIWCVFQPHTYTRTKAFLDEFAE-ALS 387

Query: 409 LADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           +AD  ++ D     E          I  +I              E      +     D+L
Sbjct: 388 MADCIVLADIYAARETDTLGISSRDIAEKIERLGKKVWYFHTFEEIEEFLKKSCIHGDLL 447

Query: 463 VVAGKG 468
           +  G G
Sbjct: 448 ITMGAG 453


>gi|77164536|ref|YP_343061.1| folylpolyglutamate synthetase [Nitrosococcus oceani ATCC 19707]
 gi|254433304|ref|ZP_05046812.1| FolC bifunctional protein [Nitrosococcus oceani AFC27]
 gi|76882850|gb|ABA57531.1| Folylpolyglutamate synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207089637|gb|EDZ66908.1| FolC bifunctional protein [Nitrosococcus oceani AFC27]
          Length = 432

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 102/388 (26%), Gaps = 24/388 (6%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +  +  ++    +    P  I+ + GT+GK S  + ++ I   +G           +  
Sbjct: 24  PSLIRASAVLQRMVLSTPPFPIVTIAGTNGKGSTVALLEAILLAAGYRVGSYTSPHLLRY 83

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA------------SSHGLDQHRLDGIK 203
             +           +              +S+                 GLD   L+   
Sbjct: 84  NERIKIQGEAVSDDIICQSFARIDAARHEISLTYFEFGTLAAIDIFHQAGLDIALLEVGL 143

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N     +    T        +    E +  E   I  +         +   + 
Sbjct: 144 GGRLDAVNALDADVAVITTVDIDHINFLGPDRESIGFEKAGIFRSHRPAICGDPEPPESV 203

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                        I       +  +     S      D   P       Y    AA + +
Sbjct: 204 LAHAKESSVPLYRIGRDFHYQMAGEGWSWWSNGSHYADLPHPALQGACQYQNGAAALMAL 263

Query: 324 ----AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
               A    S   +        +PGRF+             D AH       + +++   
Sbjct: 264 KLMAARLPVSETAIRDGLSAVRLPGRFQ---CLPGEMERIFDVAHNLQGARWLARSLTDR 320

Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
             G R   V G   D+D      + + A+    +  +  D  R    + +   + H  P 
Sbjct: 321 PCGGRTYAVLGMLADKDVAGVVSVLENAIHGWFVGGLAVD--RGLSGQALAERMGHLTPA 378

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +  +  EA R A+E     D ++  G
Sbjct: 379 IYQ--SVAEAYRAALEAAQPGDRVLAFG 404


>gi|306843220|ref|ZP_07475831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
 gi|306286585|gb|EFM58162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
          Length = 467

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGVDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|289422658|ref|ZP_06424498.1| tetrahydrofolate synthase [Peptostreptococcus anaerobius 653-L]
 gi|289156837|gb|EFD05462.1| tetrahydrofolate synthase [Peptostreptococcus anaerobius 653-L]
          Length = 470

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKR 399
            P RFE V          +D  H  +  + + K +           +V G   D+D    
Sbjct: 297 WPARFEVVSERPL---YILDGGHNLDGAKALAKEMDRQFDDSWEKTLVLGILADKDVD-- 351

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
             M K+     D  I+T  DN R+ D E++   +       I   N  +A++ ++++
Sbjct: 352 -SMVKLLAPKFDHIILTLPDNSRAMDLEELAYRVGMYCDDIICIENSEDAVKYSLDL 407


>gi|167626512|ref|YP_001677012.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189082909|sp|B0TZ72|MURD_FRAP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167596513|gb|ABZ86511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 414

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 123/392 (31%), Gaps = 65/392 (16%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
           VS    L      + S     +V +   F               ++AVTG++GKS++ + 
Sbjct: 60  VSPGIPLNKSPYRVLSKFKQKIVSDIDLFYQSI-----RNTKAKMIAVTGSNGKSTIVTM 114

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +  + +  G  S  +G   T        +                      +  VE SS 
Sbjct: 115 LDFVLRDMGYKSILVGNIGTPPLNKIGEK--------------------FDYCVVEVSSF 154

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            +D    + ++   G   N+  DH+D ++  + Y  +K+ L +              D +
Sbjct: 155 QIDL--FNSVEFDLGCVVNVSLDHLDRYKNYEEYKQSKLNLAKFSKDFFVY------DVH 206

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           +  +         R        K + + +                        L GE  +
Sbjct: 207 NTGIKYAGEYQIVRGSIYKDTTKLLDITE----------------------TNLFGEHNL 244

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            N +V   +    GID +  +  ++K   +  R E V   +    I         +    
Sbjct: 245 ENIIVVLNIFDRFGIDISKAVAAIKKFKGLKHRCEIVKNIAGVTYINDSKGTNVGATIA- 303

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              + +ITS + I++   G  +      +M K          +       +D E I   I
Sbjct: 304 --ALNSITSSKNIILLLGGVAKGGDF-SLMSKSLAKYVKYVYL-----YGQDKEYIENYI 355

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  +    +  +A R A +     +++++
Sbjct: 356 -KDMCRYQICNDMKDAFRLASQKAQDSEIVLL 386


>gi|238792997|ref|ZP_04636626.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia intermedia ATCC 29909]
 gi|238727597|gb|EEQ19122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia intermedia ATCC 29909]
          Length = 461

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 99/355 (27%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PGRWVLAVAGTHGKTTTAGMVTWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLVMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  +        
Sbjct: 202 KQFHHLVRLVPGTGKIIVPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  ++N L+A      +G+  A   + L        R E  G  
Sbjct: 262 FLDNKLVGEVSWSLVGEHNMHNGLMAIAAARHVGVSPADACKALGNFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 ANGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P ++       I       +    +   ++     D ++V
Sbjct: 381 ADEVFLFQPQH---IPWQVVEVAEACIQPAYWSADIDTLVDMIVKTAQPGDHILV 432


>gi|253699155|ref|YP_003020344.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
 gi|259509788|sp|C6DZK4|MURD_GEOSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251774005|gb|ACT16586.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
          Length = 452

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 134/396 (33%), Gaps = 45/396 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS    +      +  +    VV          AS         ++A+TGT+GK+
Sbjct: 69  ADLIVVSPGVPMDIKPLEMARSQKRRVVSEV-----ELASWFIKAP---MVAITGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   +I +  G  +F  G                   I LA++   ++      V V
Sbjct: 121 TTTTLTGEIFKACGFETFVGGNIGNPL-------------IELAESGQEVAR-----VVV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   ++  +       N+  DH+D + + Q Y +AK+R+FE     +  A++ 
Sbjct: 163 ELSSFQLE--GVESFRPDVAVLLNITEDHLDRYHSFQEYIDAKLRIFENQTADD-FAVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD        +       +  +    + I  +      + +   +    + F       
Sbjct: 220 IDDPLVAACASKLKAQLFPMSRLHELEEGISYRDGFITFSHKGKVLRFGTEGFKLK---- 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + +    + +  D     E ++    +P R E V                  
Sbjct: 276 GVHNLDNIMASLASTLLMRCDGDCAYEAVKSFKGLPHRMELVEEIDGVAYYEDSKGTNVG 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S+   L++  +      I +   G D+     P+   +   ++ + ++ +   R      
Sbjct: 336 SVVKSLESFDS-----GITLIAGGKDKGGSYEPLAPLVESRVSHLVLIGEAKAR------ 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              + +  +    E     EA+  A  +     V++
Sbjct: 385 -MQQALGSLTDTHEAQTLEEAVEIARRLTKPGGVVL 419


>gi|254373067|ref|ZP_04988556.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570794|gb|EDN36448.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 561

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 119/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTVRLTDYICRVAGK---LTGYTSTDWVKVNDELIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKE------------VMKRAHNAGCRVLSVGYQGKF 276
           A+ +        +    I   D    +            V +       +          
Sbjct: 283 AEAKSIVFRALGQGSHGIINLDNSYMKERFDKLSCAKIVVTQNPQQHDMKYYLSKADYAC 342

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
           I               + +   +         +  + NA++A  L   +GI   ++ + L
Sbjct: 343 IVEDGNFVWVEANSKKVILPVIEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANVFEWDNKVAILDYAHNEAGMEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   +     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|218248504|ref|YP_002373875.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 8801]
 gi|257061569|ref|YP_003139457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 8802]
 gi|226711906|sp|B7K318|MURD_CYAP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218168982|gb|ACK67719.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           8801]
 gi|256591735|gb|ACV02622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           8802]
          Length = 456

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 34/365 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                          + +TGT+GK++  + V  I Q SGL++   G              
Sbjct: 94  GELELAWRSLQSSPWVGITGTNGKTTTTALVAAIFQASGLNAPSCGNIGYA--------- 144

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                  LA + +   +     +  E SS+ ++  R   +    G +T    DH+  H+T
Sbjct: 145 ----ACELALSQTKTKASSFDWIIAEVSSYQIESSR--ELAPKIGIWTTFTPDHLSRHKT 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y+  K  L    L +    I   DD Y  +V              G +       K 
Sbjct: 199 LDNYYAIKASL----LRRCELQIFNGDDPYLHQVGLHQWADAYWTTVKGKEHLLCDAAKG 254

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             + +   V         +  F + G     N L+A G     GI+   + + +     V
Sbjct: 255 VYLQDNWIVAFGELIAPLNL-FKMVGVHNQQNLLMAVGAARLAGIEKGAIAQAIATFKGV 313

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +        I    A   ++ E+ L ++        +++   G  ++   R  +
Sbjct: 314 PHRLELITNIDGIDFINDSKATNYDAAEVGLVSVNA-----SVILIAGGEAKEGDDRRWI 368

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQ-- 459
            +I   +A + ++       E        +       +        A++  +E+  KQ  
Sbjct: 369 EQIKAKVATVLLI------GEAATAFAQRLQQSNYEAYEIVETMDNAVKRGLELAKKQQA 422

Query: 460 DVLVV 464
            V+++
Sbjct: 423 KVVLL 427


>gi|317061752|ref|ZP_07926237.1| folylpolyglutamate synthase [Fusobacterium sp. D12]
 gi|313687428|gb|EFS24263.1| folylpolyglutamate synthase [Fusobacterium sp. D12]
          Length = 414

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 116/356 (32%), Gaps = 25/356 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY------ 169
            I+ + GT+GK S  + +++I   +G    +      +    +                 
Sbjct: 39  KIIHIAGTNGKGSTTTTLEKILLEAGYRVGKYTSPHILKFNERIVANGVQISEEEIEYYY 98

Query: 170 -----LAKALSYLSSQGVTHVSVEAS---SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                + K     ++      ++  S     GLD   L+         TN+    +    
Sbjct: 99  YQVEKIMKEEKIDATFFEITTAMMFSYFRDKGLDYVVLETGMGGRLDATNVSEAILCIIT 158

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                    +      + KE   II           +                       
Sbjct: 159 NVSLDHTEYLGDSIYKIAKEKAGIIKNCPKVIVADQQEEFLQAILEEKAELINVLNKYAD 218

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                + +     ++ +   + F L G++Q +N L A      +GI   ++ +  EK+  
Sbjct: 219 AHYTLDFENFVTHIDIEGKQYRFSLFGDYQYHNFLCAYEAAKQLGISEDIIQKAAEKVRW 278

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRP 400
              RFE V        + +D AH  + +  ++K ++     R + +      D+D     
Sbjct: 279 EC-RFEVVSKEPL---VILDGAHNPDGVRELVKIVKQHYQKREVAILTSILRDKDV---K 331

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            M ++  +++D  ++T  DDNPR    E++   I++    F  + N   A    I+
Sbjct: 332 TMLEMMTEISDDILLTSLDDNPRGSTAEELF-HIVNQPAIFSIEENMKRAYDKLIK 386


>gi|303256684|ref|ZP_07342698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderiales bacterium 1_1_47]
 gi|302860175|gb|EFL83252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderiales bacterium 1_1_47]
          Length = 452

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 131/415 (31%), Gaps = 51/415 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           P+ +  GA+  ++ +A S  +       N  +       ++L    + L G+H   +LAV
Sbjct: 55  PEQLDAGADLYIIGNAISRGNPLLEEILNRGLPYTSGP-QWLQE--NILNGRH---VLAV 108

Query: 121 TGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
            GT GK++  S +  I +  G   SF IG      +F    RLT      +       + 
Sbjct: 109 AGTHGKTTTTSMLAWILEDCGLNPSFLIG--GVPQNFGHSARLTESEYFVIEADEYDTAF 166

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  V  S                    NL  DH D     +A    +       +P
Sbjct: 167 FDKRSKFVHYS-------------PRTVILNNLEYDHADIFPNLEAIER-QFHHLVRTIP 212

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                I          V+K                    +     + ++     +   + 
Sbjct: 213 SHGKVIFNEASEALHRVLKMGLWTPAESFGTSP------VCDWRLVEHEGARLFAGGKEV 266

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F   LPGE  + NA  A    +  G+ +   ++ L +   V  R E  G    G ++ 
Sbjct: 267 GRFELSLPGEHNLLNASAAVAAAVNAGVSAERAVDALSRFEGVKRRMEVKG-EVAGTKVI 325

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL------ADI 412
            D+AH   ++E  +K +R    +GR++ V        +     +G +   L      AD 
Sbjct: 326 DDFAHHPTAIEETIKAVRSKYQTGRLLAVLEP-----RSNTMKLGTMKAQLPGSLVQADK 380

Query: 413 AIVTDDNPRSEDPE---KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + P       A +        E  +    +   +    + D ++V
Sbjct: 381 VFC------YQGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQAEQGDTILV 429


>gi|219685169|ref|ZP_03539989.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           garinii Far04]
 gi|219673265|gb|EED30284.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           garinii Far04]
          Length = 451

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 127/431 (29%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           +  GA+ ++       +     D                         +VV N       
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLKDFDDQIRYVLGKHDINDFKKADIVVKNPSVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                A R           +   I+AVTGT GKS++ S + Q+ ++    +   G     
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQVLKKKYPKAKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGRSPLILEL-------------------SSWQLQS--LENFNPILSIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F       +     A   Y  +   +A        +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIAIIQDKAYYKYFSKFESKAKVILFSEFNPLV 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + +       ++            +    F       +   L+A  +   + +D    
Sbjct: 249 LDQDVFYYNKGEVYFND---------NLIGSFSESQVVFMIPKLIAFFVSYYLNMDLNHT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L K   +  R EFV             +   +S  + +K+++T  +   ++V G   
Sbjct: 300 FKILNKFRGIEHRLEFVKLVQNVMFYNDTASTIPDSTVLSVKSLKTNDNSINLIVGGTDK 359

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           + D        KI        + T    +     KI   +      +    +  +A+  A
Sbjct: 360 ELDFS---SFCKIIN-----LVKTWILIKGSATVKIIKILEKSSIQYFVFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
           I++ +  D+++
Sbjct: 412 IKISSPGDIIL 422


>gi|198283832|ref|YP_002220153.1| FolC bifunctional protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667109|ref|YP_002426469.1| folylpolyglutamate synthase/dihydrofolate synthase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248353|gb|ACH83946.1| FolC bifunctional protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519322|gb|ACK79908.1| folylpolyglutamate synthase/dihydrofolate synthase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 429

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 124/395 (31%), Gaps = 40/395 (10%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS--F 156
           R  L+    ++  + P  ++ V GT+GK S   +++   +++G                 
Sbjct: 30  RAALAAL--KMSARLPMPVMLVGGTNGKGSTVVYLEAFYRQAGYRVGAYTSPHLWQFTER 87

Query: 157 AQDNRLTTPSPI------YLAKALSYLSSQGVTHVSVEASSHGLDQ------------HR 198
            + +  + P  +       +A  +  +        ++ A    L               R
Sbjct: 88  LRLDGRSAPESLWHQQLTEVAATVRQIPLTYFEIATLAAVRMMLATRVDVAILEVGLGGR 147

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +       + +    +D+     +   A       +  +  PA+    +     V++
Sbjct: 148 LDAVNAFTPDCSIVTTVDLDHQDWLGSDRAAIGHEKAGIFRRGVPALYGDTEDPCASVLE 207

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A  A   +  +G          +  +H K       +               +  AL A
Sbjct: 208 AAVRADVPLQRLGRDFH------IDPLHGKWSGFGHGKDAPPPLWEGAVQWANLALALAA 261

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
             L       S   +    +L  +PGR ++       G  + VD AH   +   +   + 
Sbjct: 262 VSLLQEKLPVSDAAVSAWTRLPQLPGRCQWLQPWGKDGPDLLVDVAHNPQAARQLAALLA 321

Query: 378 TIT-SGRIIVVFGCGGDRDQGKRPIMGKIA--LDLAD--IAIVTDDNPRSEDPEKIRAEI 432
               SGR   V G   D+D       G +A  L   D    +   D PR+    ++R  +
Sbjct: 322 ARKGSGRCHAVVGMLADKDIA-----GTLAPLLHWVDAWHVLEITDTPRAASMLQLRDTL 376

Query: 433 IH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              G        +  +A+  +   L   D+L+  G
Sbjct: 377 RGLGATAVSADASMEQALERSRTTLATGDILLCFG 411


>gi|195941037|ref|ZP_03086419.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. EC4024]
          Length = 390

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 117/382 (30%), Gaps = 34/382 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            + A     K    +  V GT+GK +    ++ +   +G           +    +    
Sbjct: 5   QVAARLDVLKPAPFVFTVAGTNGKGTTCRTLESVLMAAGYKVGVYSSPHLVRYTERVRVQ 64

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T     LA++    S   +     E S    +   L  + L   +  ++    +     
Sbjct: 65  NT----ELAESAHTASFAAIEAARGETSLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR 120

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       +                D  S    K       +   VG       +  V
Sbjct: 121 LDATNMVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRANKPAVVGEPDMPHTIADV 180

Query: 283 C--------AIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGID 328
                          Q  +   G  F          PLP   Q   A   A L  +    
Sbjct: 181 ANEKGAHLLRRGEDWQYEVQDNGWRFSDAHGVLDNLPLPQVPQPNAATALAALRASGLAV 240

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVV 387
           S   +    +  ++PGRF+ V  + R   + +D AH  ++   +   ++++   GR++ V
Sbjct: 241 SEQAIRDGIQNALLPGRFQIVSESPR---LILDVAHNPHAAAYLAGRLKSLPKTGRVLAV 297

Query: 388 FGCGGDRDQGKRPIMGKIALDLA--DIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            G   D+D G     G +A   +  D       + PR    E++   +  G        +
Sbjct: 298 IGMLHDKDIG-----GTLACMESVVDSWYCAPLEGPRGATAEQLMEHLGKG----EIYSS 348

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
            + A R A+     +D ++V G
Sbjct: 349 VVSAWRAAMAEAKPEDTVLVCG 370


>gi|33865066|ref|NP_896625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 8102]
 gi|60390530|sp|Q7U8T1|MURD_SYNPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33638750|emb|CAE07045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8102]
          Length = 462

 Score = 53.0 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 112/356 (31%), Gaps = 31/356 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A           + +TGT+GK++V   +  +  ++GL++   G              
Sbjct: 98  GEMAVAWDALKHIPWVGITGTNGKTTVTHLLSHVLCQAGLAAPMGGNMGV---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   +A  L    +     + +E SS+ ++      I+   G +T L  DH++ H T
Sbjct: 148 ---SAAEMALNLQQEHTTAPDWLVMELSSYQIEA--AKRIRPRIGIWTTLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +    A   +   LL +   AI  ADD   ++  +                       +
Sbjct: 203 VE----AYRAIKRGLLERSDHAIFNADDPDLRQQRQSWTGGTWVSAESAQPDGHPADLWI 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                    +  +   +      +PG     N L+       IG+  A ++  L     V
Sbjct: 259 NGKGWVCDRSQPLFPAE---ALAMPGAHNRQNLLLVTAAARQIGLSPASIVAGLRSFPGV 315

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E VG            A   ++  + LK ++       +VV   G  +       +
Sbjct: 316 PHRLEPVGRIGNAQVFNDSKATNYDAAAVGLKAMQG-----PVVVLAGGSTKQGDATGWL 370

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            ++      + +       +E+   +     +       + +   A+  A+     
Sbjct: 371 EELNRKACAVVLF---GAGTEELHGLITG-ANFTGELTRRTDLTSAVEEAVRSAEA 422


>gi|220932273|ref|YP_002509181.1| Folylpolyglutamate synthase [Halothermothrix orenii H 168]
 gi|219993583|gb|ACL70186.1| Folylpolyglutamate synthase [Halothermothrix orenii H 168]
          Length = 457

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQGK 398
            +PGR E +  +     I  D AH    ++ ++ ++  + +   +  ++ G  GD+D   
Sbjct: 311 FIPGRMEVLARSPL---IIADGAHNVEGVKKLVNSLGPLINEDRQFYIIVGILGDKDVEG 367

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              M        ++ I  + N RS  PE I          +    +   ++   +     
Sbjct: 368 MIEMLDFGKAKKELIITRNTNSRSCSPEVIGQYAQRRGIKYRVYPDLKTSLTGVLNDARP 427

Query: 459 QDVLVVAG 466
           +DV+ V G
Sbjct: 428 EDVICVTG 435


>gi|157692194|ref|YP_001486656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pumilus SAFR-032]
 gi|167017287|sp|A8FCX9|MURD_BACP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157680952|gb|ABV62096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           SAFR-032]
          Length = 451

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 109/373 (29%), Gaps = 66/373 (17%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  L        + +TG++GK++  + + ++ ++    +   G   T++S    N   
Sbjct: 105 ELAYHLTSSP---FIGITGSNGKTTTTTLIYEMLKKDSQKTLVAGNIGTVASEVAANADG 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                +  E SS  L        +       N+   H+DYH T+
Sbjct: 162 ------------------DEWIVTELSSFQL--MGTVEFRPKISLILNIFDAHLDYHHTR 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  AK ++F      +   I    D  S   +     A     SV    +     +  
Sbjct: 202 EEYEKAKQKVFVHQHEDDIAVI--NLDDPSVVKLAEGSKAKKVFFSVKEPVEHGAFIQHG 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           AI+   +  I V+                 N L A  +    G  +  ++  L     V 
Sbjct: 260 AIYYMNEHIIDVKDVVLPGEHNQ------ENILAAICVVKNAGCSNDAIVHVLTTFGGVK 313

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-- 401
            R +FV T           A    +    L            ++   G DR      +  
Sbjct: 314 HRLQFVDTIQSRKFYNDSKATNILATSKALSAFEQ-----PTILLAGGLDRGNEFDELKP 368

Query: 402 ----------MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                      G+ A     +          E+          GI       N  +A+  
Sbjct: 369 FMKHVKGMITFGETAPKFVKL---------GEEL---------GIHHVKHVDNVEQAVPA 410

Query: 452 AIEMLNKQDVLVV 464
           A  +  ++DV+++
Sbjct: 411 AFNISEEEDVILL 423


>gi|152996626|ref|YP_001341461.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
 gi|189028999|sp|A6VYJ7|MURC_MARMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150837550|gb|ABR71526.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
          Length = 473

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 135/418 (32%), Gaps = 51/418 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  IVVS+A + Q+          I +V   R+   L+      +G      +AV GT G
Sbjct: 76  AHVIVVSTAINEQNPEIIWGKEHRIPIV---RRAEMLAELMRYRHG------IAVAGTHG 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I             T    +F    RLT+         L   +       
Sbjct: 127 KTTTTSLMASILAA----------TGEAPTFVIGGRLTSAGA---NAQLGSSAYLVAEAD 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             +AS   L               TN+  DH+D +             F   LP    A+
Sbjct: 174 ESDASFLHLQ--------PQTVIVTNIDEDHMDTYDGDFEKVKHTFIEFVHNLPFYGLAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLF 304
           +  DD   +E++               Q    +  ++       +        +      
Sbjct: 226 LCVDDENVREILPTLSRPVLTYGI--DQEADFYATEIVQTGRYCEFLAHRPEGEPLKIRL 283

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
           P+PG   V NAL    +   +G+D++ +   L     V  RF+        N        
Sbjct: 284 PMPGRHNVLNALATIAVATDLGVDASAIQAGLMGFEGVGRRFQEQKPLALPNGSNVMFVD 343

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD 418
           DY H  + +   +K IR     + +V+        R +       ++     D+ ++ D 
Sbjct: 344 DYGHHPSEVLATIKAIRAGWPEKRLVMVYQPHRYTRTRDLYEDFVRVLSQ-VDVLLLLDV 402

Query: 419 NPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
               E P        +   I   G    I  G+  + +R+ +   L + D+L+  G G
Sbjct: 403 YSAGEAPINGADSRSLCGSIRQRGNVDPIHVGSEAD-LRSILSNVLREGDLLITQGAG 459


>gi|146297042|ref|YP_001180813.1| FolC bifunctional protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410618|gb|ABP67622.1| FolC bifunctional protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 431

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 115/402 (28%), Gaps = 42/402 (10%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           +N +K L L  +    +    I+ V GT+GK S  +F+ Q+   +G              
Sbjct: 25  ENIKKLLELMGN---PQKDLRIVHVAGTNGKGSTCAFINQMLIEAGYKVGLYTSPYLEFF 81

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
             +      P        ++      V  +  +  +H  +   +  I       TN+   
Sbjct: 82  NERIKINNIPISNDELATITEFVKDKVDLMISQGFNHPTEFEIVTAIAFEYFKRTNVDFV 141

Query: 216 ------HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
                    +  T          +               +    ++      ++   +  
Sbjct: 142 VLEVGLGGRFDATNVVETPELCIITSIGYDHMDILGQTIEQIAYEKAGIIKESSTVILGL 201

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV----------------Y 313
             Y+     + KVC   N   + +  + K                              +
Sbjct: 202 QRYKEAIDVISKVCKQKNANLIEVKSDYKIIKNTLDGIVFDCTTPKGIYKNLEINLLGVH 261

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHV------VPGRFEFVGTNSRGGRIYVDYAHTSN 367
               A     A    S         L          GRFE +        + +D AH  +
Sbjct: 262 QVENALNCIYAFEYLSDKYNISTIALVKGLLNAKWNGRFEIISKEPL---VILDGAHNID 318

Query: 368 SLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSED 424
            + +++ + +     + I  V G   D++  K   M K     +D  I T      R+  
Sbjct: 319 GMRVLVDSCKQYLKDKKISAVVGILKDKEYKKMLSMIKEVT--SD-VIFTLVPYQKRAFS 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           P + +   +    GF    +  EAI  +++   K   +++ G
Sbjct: 376 PAEAKEAALKF--GFEFIKDYKEAIDVSLKKAEKDTAILICG 415


>gi|315639620|ref|ZP_07894760.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
 gi|315484581|gb|EFU75037.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
          Length = 454

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 93/279 (33%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   HIDYH ++  Y  AK R+ + +  K+   I 
Sbjct: 170 MELSSFQL--MGITDFHPEIAVITNIYEAHIDYHGSRPEYVQAKWRIQKNMTDKDYLVIN 227

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +        + + A +    V+    +G+     ++      +   I            +
Sbjct: 228 WNQTE----LRELAKSTKATVVPFSTEGQVDGAYEIDGQLFFKGQLIMS-----VDELGV 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A  +     +    +   L +   VP R ++VGT+          A   
Sbjct: 279 PGQHNVENALAAIAVASLKQVRPEAIKAALSQFTGVPHRTQYVGTHGDVRFFNDSKATN- 337

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
                    +      + +V+   G DR      ++  +    A +          +  +
Sbjct: 338 --SLATRMALGGFDHQK-LVLLAGGLDRGNSFDELIPDLKGIKAIVLF-------GQTKD 387

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+       GIP      N   A+  A  +    D +++
Sbjct: 388 KLADAAQKAGIPIIKFSENVESAVPLAFTLSEPGDTILL 426


>gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 453

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 115/386 (29%), Gaps = 48/386 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  N  I +  +                  N +AVTGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVKIAKNFNIPITSDIDLL-------FEKSRILNFIAVTGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                          +  +        +E S
Sbjct: 120 ALISHILNSNGLDYPVAGNIGVS---------------------ALRAKASKDGYVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+ +  K    I   +D
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMTGYIAAKSKIFDRMDKKSYAVINIDND 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K  M        +++         +   V     K             F   L G  
Sbjct: 217 YCRKIFMLLQQEQRIKLIPFSVTKILENGILVVDDKIKDNDISY----KLSFNKNLQGLH 272

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N   +  +   IG++   ++E +     +P R +++G+ +         A  + S  
Sbjct: 273 NYENIAASYAVAKIIGVEPKKIIESISSFQSLPHRMQYIGSINNISFYNDSKATNAISAV 332

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +K +  I     +      G   +  +P   KI                    ++I A
Sbjct: 333 QSIKALDNIYW---LAGGTPKGGGIEEIKPYFSKIKKAYF-----------YGQAKEIFA 378

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEML 456
                I  F+   +  +A   A +  
Sbjct: 379 NTAKNIVDFVICDDLEQAFDLAYKDA 404


>gi|157369007|ref|YP_001476996.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia proteamaculans
           568]
 gi|167017284|sp|A8G9S8|MURC_SERP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157320771|gb|ABV39868.1| UDP-N-acetylmuramate--alanine ligase [Serratia proteamaculans 568]
          Length = 492

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 79/424 (18%), Positives = 139/424 (32%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAISADNPELVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH++ +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF- 302
           A++  DD   +E++ R                   ++    +  +   T+S + K     
Sbjct: 227 AVMCVDDPVVRELLPRVGRHITTYGFSDDADV--RIESYRQVGPQGHFTLSRQDKPLMTV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------ 356
               PG     NA  A  +    GID A +L  L        RF+F+G            
Sbjct: 285 TLNAPGRHNALNAAAAVAVATEEGIDDADILRALAGFQGTGRRFDFLGEFPLEPVNGKSG 344

Query: 357 --RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADI 412
              +  DY H    ++  LK  R      R+++VF      R +        +     D+
Sbjct: 345 SAMLVDDYGHHPTEVDATLKAARAGWPDKRLVMVFQPHRYTRTRDLYDDFANVLSQ-VDV 403

Query: 413 AIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++ D     E      D   +   I   G    I   +      T  ++L   D+++V 
Sbjct: 404 LLMLDVYSAGETAIPGADSRSLCRTIRSRGKLDPILVSDADTVPETLAQLLQADDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|254708105|ref|ZP_05169933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M163/99/10]
 gi|254710474|ref|ZP_05172285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis B2/94]
 gi|254714467|ref|ZP_05176278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M644/93/1]
 gi|254717365|ref|ZP_05179176.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M13/05/1]
 gi|256031968|ref|ZP_05445582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M292/94/1]
 gi|260169105|ref|ZP_05755916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           F5/99]
 gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
 gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
          Length = 467

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 115/367 (31%), Gaps = 63/367 (17%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI----EMLN 457
           +G+ A   A                      + G   F        A+  A         
Sbjct: 384 IGEAAAQFA--------------------ATLGGAVPFEISDTLAAAVAHATGDAGNDAA 423

Query: 458 KQDVLVV 464
            + V+++
Sbjct: 424 PEPVVLL 430


>gi|42046|emb|CAA35611.1| unnamed protein product [Escherichia coli K-12]
          Length = 438

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 135/398 (33%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +  +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVTATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL    L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALARVALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|238922862|ref|YP_002936375.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
 gi|259509771|sp|C4ZBV1|MURC_EUBR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238874534|gb|ACR74241.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
          Length = 459

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 85/273 (31%), Gaps = 10/273 (3%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  +H+D+ +      ++        L   +  I    D   +E++      
Sbjct: 179 PRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID-RYEEIVAGLPQK 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                       +                +      FD    +PG   V NAL A  L  
Sbjct: 238 IITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIALST 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+D   +L  L+K      RF++ G    G  I  DYAH    +   L   +     R
Sbjct: 298 TLGLDEESILTGLDKFGGADRRFQYKG-KVNGVTIIDDYAHHPTEIRATLTAAQKYPHDR 356

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGI 436
           +++ F      R +        +   +AD+ ++ D     E        + I   ++   
Sbjct: 357 LVLCFQPHTYSRTKAFLNDFADVLS-MADVVVLADIYAAREQNTYGISSKDILDLLLEKG 415

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  +  E  +   E     D+L+  G G+
Sbjct: 416 VNAHYFPSFEEIEKFLSENCVNGDLLITMGAGN 448


>gi|229524524|ref|ZP_04413929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
 gi|229338105|gb|EEO03122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
          Length = 451

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 104/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P           E +      GC   +     +     K       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEFSGEQGEWQAKKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLFKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|194017884|ref|ZP_03056493.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
 gi|194010536|gb|EDW20109.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
          Length = 432

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 70/409 (17%), Positives = 116/409 (28%), Gaps = 63/409 (15%)

Query: 71  IVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+          +    P++      KFL  +            +A+TG  GK+S
Sbjct: 64  VIAGNAFPDTHPEIERALSEGIPVIR---YHKFLGEYMDTFTN------VAITGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG  S +     +            +   +  S    +  + 
Sbjct: 115 TTGLLAHVMQSAKPTSYLIGDGSGMGKENSEY-----FVFEACEYRRHFLSYHPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY       F+A        L  +   I   
Sbjct: 169 ---------------------TNIDFDHPDYFSDIDDVFDAFQ---NMALQVKKAIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD +   + K              +  F     V                   F  P  G
Sbjct: 205 DDEH---LPKIQAKVPVVYYGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V N+L    LC    ID  L+   L     V  RF       +   +  DYAH    
Sbjct: 262 NHNVLNSLAVIALCHYEAIDVELIKGALTTFGGVKRRFNEKVVGEQ--VLIDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +E+ ++  R     R IV         R Q         +L  AD   + D         
Sbjct: 320 IEVTIEAARQKYPDREIVAVFQPHTFTRTQQFLSEFAD-SLKKADYVYLCD--------- 369

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            I       I   +   +  E I  A  +  +   ++   K H+   +V
Sbjct: 370 -IFGSARENIGK-LSIEDLREKIPQAQLIAEEDTSVL---KAHKDGILV 413


>gi|258622767|ref|ZP_05717785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
 gi|258584955|gb|EEW09686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
          Length = 451

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 105/359 (29%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S V  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P           E +      GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDEALADVFKRGCWSETEFSGEQGEWQAEKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+        +   N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCAQPAQISANMDEFVAMIAKEAKAGDQILV 431


>gi|225024992|ref|ZP_03714184.1| hypothetical protein EIKCOROL_01881 [Eikenella corrodens ATCC
           23834]
 gi|224942222|gb|EEG23431.1| hypothetical protein EIKCOROL_01881 [Eikenella corrodens ATCC
           23834]
          Length = 435

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 117/384 (30%), Gaps = 35/384 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL- 170
           +    ++ V GT+GK SV +F++ I + +G  +  +     +    +      P+     
Sbjct: 43  QPQCPVIVVAGTNGKGSVCAFLESIYRAAGFKTGMLTSPHILRYNERICVNGQPAADETI 102

Query: 171 --------------------AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF- 209
                                  L+ +         V     GL   RLD + +  G   
Sbjct: 103 AASFERIEAARGDTALTYFEFNTLAAVDIFRRAETDVMILEVGLG-GRLDAVNIFDGDVS 161

Query: 210 --TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T++  DH  +          +             A     ++  +       +     
Sbjct: 162 VVTSVDLDHQAFLGDTVEQVAFEKAGVFRAGKPAVCAQNPPPESLRRHAEAIGADLLLAG 221

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
              G+                 ++      ++      L G +Q+ NA  A  +   +  
Sbjct: 222 RDFGFSKLEQQQWSFHFHPEHSRLFSGSRNRNALPFPALRGGYQLGNAACALAVLECLNA 281

Query: 328 DSALVLEHLEK---LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GR 383
              + +  +++   L   PGRF+ +          +D  H  ++   + +++  +    +
Sbjct: 282 RLPVDIGAIKRGLLLVSHPGRFQVLPGRPL---TILDVGHNPHAARALRRSLMALPFAEK 338

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEK 442
            + VF    D+D      + +      +  +     PR    E ++  +   G       
Sbjct: 339 RLAVFSMLADKDIDTVVSLLQ--DQFDEWLVAPLPLPRGLSAEALQQHLEAAGAANVRLF 396

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  EA R A+    + D +VV G
Sbjct: 397 ASVGEAYRAALSEAGENDRIVVFG 420


>gi|157377044|ref|YP_001475644.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
 gi|157319418|gb|ABV38516.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
          Length = 487

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 112/357 (31%), Gaps = 17/357 (4%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 124 PNRWVLAVSGTHGKTSTSSMLAWILEECGYEPGFLIGGVPQNFGVSARLGNSPFFVVEAD 183

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +         S     Q R   I  +     ++  D     +          
Sbjct: 184 EYDSAFFDKR--------SKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVP 235

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK--VCAIHNKQ 289
              + + PK+S A+    +       +    +  R      Q          + A    +
Sbjct: 236 GQGKIIWPKDSEAVQQVIEMGCWSEQETYTKSQSRGPKAIEQQAPAQGWSTQLIADDGHK 295

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                         + L G+  V NA +A    + +G+   + +E L K      R E +
Sbjct: 296 FELFFNGDSQGILDWSLIGQHNVENATMAIAAALHVGVQPEVAIEALTKFSPPKRRMELI 355

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIAL 407
           G    G  +Y D+AH   ++   L+  R  +  G+I ++     +  + G        ++
Sbjct: 356 G-TVNGIEVYDDFAHHPTAIATTLQGTRAKVGEGKITIILEPRSNTMKSGVHKDTLADSM 414

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            LAD A +   +    D +   A +              E I          D ++V
Sbjct: 415 KLADEAYLYQADNIGWDVK---AAMEKAELPVTVLYQIDEIIDAVASKAKSGDTIIV 468


>gi|149198597|ref|ZP_01875641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
 gi|149138312|gb|EDM26721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
          Length = 437

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/411 (15%), Positives = 117/411 (28%), Gaps = 58/411 (14%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTP------ILVVDNTRKFLSLFASRLYGKH 113
           I Q I +GA  +  S  Y+    +  +                 +  F+           
Sbjct: 50  IQQLIEEGA--VFCSLPYTQAFENCVMSPGINPKSELYQAAKKASVNFMGELDFAAKFMP 107

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               LA+TGT+GK++     Q   +     +   G                     L  A
Sbjct: 108 QTKFLAITGTNGKTTCTEMTQHTLKNLDYEAVACGNIG------------------LPLA 149

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              L         VE SS+ +D   L  +K  A    N+  DH+D + T   Y ++K+ +
Sbjct: 150 EVALRDNQPDFAVVEISSYQIDL--LSSLKFDAAIILNVSEDHMDRYGTFDKYLDSKLMI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +                     +++        +      +   L     +   +   I
Sbjct: 208 RKF---------------CHFLAVQQDVECAQADMVFSIGDEKADLMIGEELFQYRDQKI 252

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +    F     L       NAL    L  +  ID    L  +        R E   T  
Sbjct: 253 PLPKFSFYGKHNL------ENALGVLALLNSQKIDLQKSLLAMSDFTCSEHRLEDFATYQ 306

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    +    SL + L+        + IV+   G D++     ++  +        
Sbjct: 307 NVLYVNDSKSTNPASLMVALETFAD--KNKKIVLIAGGRDKNMDL-SVVNPLISKYVKEV 363

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    E  E     + H +       +   A+  AI    + DV+++
Sbjct: 364 F-----SYGECKEN-LKALWHTLCLTNLCADFEGAVLEAISCAKEGDVVLL 408


>gi|120609513|ref|YP_969191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
 gi|120587977|gb|ABM31417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
          Length = 667

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 121/382 (31%), Gaps = 41/382 (10%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            ++L A +    +   +LA+TGT+GK++V S    + + +G S    G            
Sbjct: 267 AMALDALKASHGYAPAVLAITGTNGKTTVTSLTGLLVECAGRSVAVAGNIGPTLLDTLGR 326

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
            L       L                +E SS  L+     G +  A +  N+ +DH+D+H
Sbjct: 327 HL---DADTL-----------PQAWVLELSSFQLE--GAAGFEPTAATVLNVTQDHLDWH 370

Query: 221 QTQQAYFNAKMRLFEE---LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
              QAY  AK R+F E   ++     A +         V  +       V       +  
Sbjct: 371 GDMQAYARAKARIFGESGLMVLNREDAAVMGMLPPPVRVKLQKPQLRAHVTFGADMPQRP 430

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL- 336
               +  ++    +  + E  +         E  ++   +     + I      V     
Sbjct: 431 GDFGIETVNGMAWLVRAQESDETARRTRSHAEEDLHIQRLIPADALRIRGRHNAVNALAA 490

Query: 337 -------------EKLHVVPGRFEFVGTNSRGGRIYVDYA--HTSNSLEMILKNIRTITS 381
                            +   R E       G    V+Y       ++   +  +  + +
Sbjct: 491 LALAHAAGCAFAPMLYALREYRGEPHRVEPVGRVNEVEYFDDSKGTNVGATVAALGGLGA 550

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
            R +VV   G  + Q   P+           A++        D  +IRA +       I+
Sbjct: 551 DRRVVVILGGDGKGQDFSPL-AMPVSRYVRAAVLI-----GRDGPQIRAALRDAGVPLID 604

Query: 442 KGNRIEAIRTAIEMLNKQDVLV 463
                EA+R A +  +  D ++
Sbjct: 605 APTLPEAVRLAAQRAHAGDAVL 626


>gi|28898962|ref|NP_798567.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153840129|ref|ZP_01992796.1| FolC bifunctional protein [Vibrio parahaemolyticus AQ3810]
 gi|260365290|ref|ZP_05777847.1| bifunctional protein FolC [Vibrio parahaemolyticus K5030]
 gi|260878840|ref|ZP_05891195.1| bifunctional protein FolC [Vibrio parahaemolyticus AN-5034]
 gi|260896238|ref|ZP_05904734.1| bifunctional protein FolC [Vibrio parahaemolyticus Peru-466]
 gi|260899993|ref|ZP_05908388.1| bifunctional protein FolC [Vibrio parahaemolyticus AQ4037]
 gi|28807181|dbj|BAC60451.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746247|gb|EDM57335.1| FolC bifunctional protein [Vibrio parahaemolyticus AQ3810]
 gi|308088798|gb|EFO38493.1| bifunctional protein FolC [Vibrio parahaemolyticus Peru-466]
 gi|308094214|gb|EFO43909.1| bifunctional protein FolC [Vibrio parahaemolyticus AN-5034]
 gi|308107269|gb|EFO44809.1| bifunctional protein FolC [Vibrio parahaemolyticus AQ4037]
 gi|308115451|gb|EFO52991.1| bifunctional protein FolC [Vibrio parahaemolyticus K5030]
          Length = 420

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 105/367 (28%), Gaps = 21/367 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +         + + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRING----VDVE 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A    +   V     + S    +   L  +++      ++    +       A      
Sbjct: 102 DAKHCEAFDYVEKQRGDISLSLFEFGTLAALRIFQVENVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 162 DVSVITSLAIDHVDWLGDDINVIGFEKAGIYRAGKPAICGQPLPPATVAAHADDIGAEFF 221

Query: 288 KQQVTISVEGKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +  +       +  + +              +     A  L      +  +   ++    
Sbjct: 222 QVGIQFDYALTEKGWKWSSGAFALEDLPLPSLPLPNAATALMALGASELQITDINIVNGL 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
                   +        I +D AH  +S E +++ ++T  +G+ I VV     D+D    
Sbjct: 282 NNARLAGRMQVLQHEPEIVLDVAHNPHSAEYLVEKVKTHYAGKTIHVVIAMLHDKDIKAT 341

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
               K        A +T   PR+   +++   +  G   F       EA  +A+      
Sbjct: 342 LAALKPIATHWYPASLT--GPRAATADELCQYLPQGQVQFQTPV---EAFESALSSAASN 396

Query: 460 DVLVVAG 466
           D+++VAG
Sbjct: 397 DLVLVAG 403


>gi|159900082|ref|YP_001546329.1| Mur ligase middle domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893121|gb|ABX06201.1| Mur ligase middle domain protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 538

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 106/373 (28%), Gaps = 33/373 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A++GT+GK++    +    + +G  + +            +  +          A   L
Sbjct: 151 IAISGTNGKTTTTRLIDFSLRTAGYQTGRTDTDGVW---INNQAIEQGDWTGFGGAQRVL 207

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           S   V    +E +  GL +  L          TN+  DH+           A  +     
Sbjct: 208 SHPAVEVAVLETARGGLLRRGLAFNHCEIAVLTNVADDHLPDRGLATVAEMAHFKATIVR 267

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             +++  +  ADD    EV+     A     S+      I   +             +  
Sbjct: 268 AAQKAVIL-NADDPVLVEVVAPQATAPIIWFSLQATNPLIVQAQQNQQACLYLDANQLIL 326

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE----------------HLEKLHV 341
                   L    ++  +             +A                           
Sbjct: 327 ASAGQTQALIAVAELPLSFGGVAQHNIANALAAAAALFAFGLSAGQIALGLAGFQPNAEH 386

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV-VFGCGGDRDQGKR 399
            PGR         G  + +DYAH S+ L ++L +   +  + R I  VF   GDR   + 
Sbjct: 387 NPGRL--NQFQRDGITLLIDYAHNSDGLRVLLASAAPLRAANRHIAMVFSGTGDRTDQQI 444

Query: 400 PIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIR 450
                I     D  I+  D        P   +P  I A    G+      E      A  
Sbjct: 445 QEQMTIIAQHVDRLILKRDPWFLRGREPGVLEPLMIAAATAAGLDPAAIAELEGDEAAFN 504

Query: 451 TAIEMLNKQDVLV 463
              +     DVL+
Sbjct: 505 ELTQPAKAGDVLI 517


>gi|117922177|ref|YP_871369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. ANA-3]
 gi|117614509|gb|ABK49963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           ANA-3]
          Length = 439

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 127/397 (31%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   ++         +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIAIDTPEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + +         +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGIP-------------ALDLLTENADI-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDA 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                          A       G     I+      +                    L 
Sbjct: 220 LTIPTEPMNQNSFGLAPPEGDEWGICDSKIYHGHSEIMPIT--------------EVSLI 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+G++  ++ +       +  R E VG  +    +    A    
Sbjct: 266 GSHNHANLLAAMALVYAVGVEKQVMAKVARTFTGLSHRCEVVGVKAGVTYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +         ++   GGD   GK      +   L     VT       D  K
Sbjct: 326 ATVAALDGLSDHLGD---IILIAGGD---GKGADFSPLVEPLTK---VTHLITLGRDGNK 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A +  G    I+  +   A+  A E+    D++++
Sbjct: 377 IAA-LKEG---AIKVDSMAAAVAKAAELATSGDIVLL 409


>gi|303258235|ref|ZP_07344242.1| UDP-N-acetylmuramate--alanine ligase [Burkholderiales bacterium
           1_1_47]
 gi|302858988|gb|EFL82072.1| UDP-N-acetylmuramate--alanine ligase [Burkholderiales bacterium
           1_1_47]
          Length = 462

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 139/418 (33%), Gaps = 49/418 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
           A  +V S+A    +       N  I VV   R   L+       G      +AV GT GK
Sbjct: 65  AGVVVTSTAVHADNPEVVEAKNRNIPVVP--RAIMLAELMRLRQG------IAVAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  I +R G   +F IG    +++   + +L     I      S  S       
Sbjct: 117 TTTTSLITSILERGGLDPTFVIG--GRLNAAGSNAKLGQGLYIVAEADESDASFLN---- 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH+D +             F + LP    A+
Sbjct: 171 ----------------LSPVISVVTNIDEDHMDTYGHDLRNLRKAFTDFIQRLPFYGRAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
           +  +    + ++ +             +   I  + + A   +   T+  +G    +   
Sbjct: 215 MCIESENVRAILPKITKPILTYGF--REDAQIRAENIRADGTQMHFTLVRDGAAPEEITV 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGRIYV 360
            LPG   V N+L A G+ + + +    + E L     V  RF   G           +  
Sbjct: 273 NLPGVHNVLNSLAAIGVALTLDVPMEAIKEALATFKGVGRRFAVWGEAQSLKGEKFLVVD 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDD 418
           DY H    +   +   R     R ++V        + +     + ++  + AD  ++   
Sbjct: 333 DYGHHPTEMAATIAAARGAYPDRRLLVAFQPHRYTRTRDCFEDLVRVLSN-ADALVLEAV 391

Query: 419 NPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P  E      D   +   I + G    +  GN  E +      + + DV++V G G+
Sbjct: 392 YPAGEEKIFGADSRSLCRSIRLTGKVEPLFAGNTDEVMELVNNNVKEGDVVLVMGAGN 449


>gi|229180733|ref|ZP_04308071.1| Folyl-polyglutamate synthetase [Bacillus cereus 172560W]
 gi|228602711|gb|EEK60194.1| Folyl-polyglutamate synthetase [Bacillus cereus 172560W]
          Length = 433

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAIYYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +            +           +   + +         G   +    V      
Sbjct: 221 LYELSKHFTALHKQSNEDGEQFDFTCPFSAFEDLQISMKGIHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +          GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEEIRTGLLEAYWIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--- 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +E + + DVL++ G
Sbjct: 391 LVFENWKEAIDTKVEKIAENDVLIITG 417


>gi|123440792|ref|YP_001004783.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087753|emb|CAL10538.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 461

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 102/360 (28%), Gaps = 36/360 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PGRWVLAIAGTHGKTTTAGMVAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLVMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  A+       
Sbjct: 202 KQFHHLVRLVPGAGKIIVPDNDNHLKQVMAMGCWSEQELVGETGRWFARKVAVDASVFEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 FLDNKLVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPAAACRALGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK----RPIMGKIALD 408
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K    R  +      
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGMCRNELAPSLGR 380

Query: 409 LADIAIVTDDNPRSEDPEKIRAEI----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +         P+ I  ++       I       +    +   ++     D ++V
Sbjct: 381 -ADEVFLFQ-------PQHISWQVVEVAEACIQPAYWSADIDTLVDMVVKTAQPGDHILV 432


>gi|121728122|ref|ZP_01681158.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           V52]
 gi|121629590|gb|EAX62012.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           V52]
          Length = 421

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 108/368 (29%), Gaps = 22/368 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +           + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINAQDLADEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    +S+     G    L       + ++       GR             
Sbjct: 106 TQAFAHIEQERGDISLSLFEFGTLAALYLFEQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +         +   +   F         +     A  L        A+   ++       
Sbjct: 226 QFSYEKTSATTWNWRSGRFELTDLPIPSLPLPNAATALMALGCSGLAISDINIVDGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   S    I +D AH  +S   +++ +      R I +VFG   D+D       
Sbjct: 286 QLAGRMQVISHQPTIVLDVAHNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD------- 338

Query: 403 GKIALDLADIA-IVTDDNPRSED--PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNK 458
             IA  +A++   VT   P S         A++   +P    +  N + A   A+     
Sbjct: 339 --IASTVAELIPAVTHWYPASLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGA 396

Query: 459 QDVLVVAG 466
           QDV+VVAG
Sbjct: 397 QDVIVVAG 404


>gi|114330910|ref|YP_747132.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307924|gb|ABI59167.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 630

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 109/356 (30%), Gaps = 22/356 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             + +TG++GK++       I               + S       L TP  I     L+
Sbjct: 40  QFIGITGSAGKTTTKELCNLILS------------GSYSVMTTPQSLNTP-IIVAETMLA 86

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A   G     L   +   G  TN+ +DH    + Q     A  +   
Sbjct: 87  TEKKHKFCIMELGAFKPGALDLPLRLFRPKIGVLTNIEKDHYRAFKGQGVDGIAVEKAKL 146

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                ++   I   D    + +     A    +    +      K         ++T++ 
Sbjct: 147 IEALSKNGTAILNMDDPRVKAIGERCKARVIWVGKNPESTIRLCKVTSRWPEPLKLTVTY 206

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +GK ++    L G     + L A G+ IA G+     +  L +     GR + V      
Sbjct: 207 QGKLYEVPTHLYGTQLALSILSALGVAIAAGLSIEEAINKLVEAVPTAGRMQIVTGEDDV 266

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR---PIMGKIALDLADI 412
             I  D      SL    K ++   + R I V G   D             +   + AD+
Sbjct: 267 TFIRDDMKAPYWSLLAPFKFLKEADALRKIAVVGSISDFSGDSTMIYKRCARELREYADM 326

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I   DN        +RA                EA     + L   D++++  KG
Sbjct: 327 VIFVGDNAH----RALRARKDENDSTLQGFLTLKEASSFLQKTLRPGDLVLL--KG 376


>gi|238788685|ref|ZP_04632477.1| Folylpolyglutamate synthase [Yersinia frederiksenii ATCC 33641]
 gi|238723280|gb|EEQ14928.1| Folylpolyglutamate synthase [Yersinia frederiksenii ATCC 33641]
          Length = 387

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 112/378 (29%), Gaps = 44/378 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  V GT+GK +    ++ I   +GL                 + L     + + 
Sbjct: 17  KPAPKVFTVAGTNGKGTTCCTLESILLAAGLRVGVYSS---------PHLLRYTERVRIQ 67

Query: 172 KALSYLSSQGVTHVSVEASSHGL-----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                 +    +   +EA   G+     +   L  ++L   +  ++    +       A 
Sbjct: 68  GKELSEAEHSHSFAQIEAGREGISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDAT 127

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC--- 283
                 +                D  S    K     G +   VG       +  V    
Sbjct: 128 NIVDSDVAAVTSIAIDHTDWLGFDRESIGREKAGVFRGGKPAIVGEPDMPQSIADVATQL 187

Query: 284 ----------AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALV 332
                        ++   +   +     +         + NA  A  +    G+     V
Sbjct: 188 GASLYQRDKAWQFSQHDQSWDWQCDGRQWCNLPLPNVPLANAATALAVLHYSGLPLSEEV 247

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCG 391
           +    +   +PGRF+ V        + +D AH  ++   +   +  +   G++  V G  
Sbjct: 248 IRQGLQAASLPGRFQIVSEQPL---LILDVAHNPHAARYLTDRLAQLPKQGKVRAVVGML 304

Query: 392 GDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D G     G +A   +  D       + PR         ++   +    +  +   A
Sbjct: 305 SDKDIG-----GTLACLSEQVDEWYCAPLEGPRG----ASAEQLAKHLTLSRQFSDVETA 355

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++    +DV++V G
Sbjct: 356 WRQAMQDAGSRDVVIVCG 373


>gi|229846167|ref|ZP_04466279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
 gi|229811171|gb|EEP46888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
          Length = 437

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/401 (15%), Positives = 125/401 (31%), Gaps = 67/401 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRTATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLET--TYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIY----HNAKVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           + +    +            G             +  K +V +  E              
Sbjct: 215 SLTFGEGENQAEQIVSFAENGADYWLKTENGKQYLMAKDEVILPCEEATLVGRHNY---- 270

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A+GI+   +   L +   +  RF+     +    I    A    S  
Sbjct: 271 --MNILAATALAQAVGINLDAIRTALRQFKGLDHRFQLAHQANGVRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR- 429
             L  +     G++ ++ G  G          G    +LAD+            P+ I  
Sbjct: 329 AALAGL--YVEGKLHLLLGGDGK---------GADFSELADLI---------NQPQIICY 368

Query: 430 ------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 A++              +AI      L   D++++
Sbjct: 369 CFGRDGAQLAKLSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|225378135|ref|ZP_03755356.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
 gi|225210016|gb|EEG92370.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
          Length = 459

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 87/272 (31%), Gaps = 10/272 (3%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  +H+D+ +      N+   LF +   +    II  +    +E+++     
Sbjct: 179 PKYSIILNIEAEHLDFFKDIHDIRNS-FHLFAKNTKENGAIIINGEIENYQEIVEGLAPQ 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                       +                +    K  D    +PG   V NAL A  L +
Sbjct: 238 VITYGMSDACDFYPADITFNEKACANFTAMYHGEKVMDVALNVPGLHNVSNALAAIALAL 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            + I    +L  L        RF++ G    G  +  DYAH    +   L   +     R
Sbjct: 298 DLKISKEDILAGLSAFGGADRRFQYKGC-VDGVTVIDDYAHHPTEIRATLTAAKKYPHKR 356

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGI 436
           +++VF      R +       ++   +AD+ ++ D     E          I A++    
Sbjct: 357 LVLVFQPHTYSRTKAFLNDFAEVLS-MADVVVLADIYAAREKNTFGISSRDIEAKLKEKG 415

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +  E     ++     D+L+  G G
Sbjct: 416 TDVHYFPSFTEIENFLLKNCINGDLLITMGAG 447


>gi|145630239|ref|ZP_01786021.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145641273|ref|ZP_01796853.1| D-alanine--D-alanine ligase [Haemophilus influenzae R3021]
 gi|144984520|gb|EDJ91943.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145274110|gb|EDK13976.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.4-21]
          Length = 475

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 118/377 (31%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA    +    A+ +   P++      + L+      +G  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVASKQKRIPVIQRA---QMLAEIMRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN+  DH+D ++       A    
Sbjct: 173 EADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +                 I   +           I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFI 334

Query: 354 RGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           R     R+  DY H    + + +K  R     + IV+        + +       ++   
Sbjct: 335 RPNGKVRLVDDYGHHPTEVGVTIKAAREGWGEKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 409 LADIAIVTDDNPRSEDP 425
             D  I+ D     E P
Sbjct: 395 -VDALIMLDVYAAGEAP 410


>gi|227082660|ref|YP_002811211.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|298500631|ref|ZP_07010435.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
 gi|227010548|gb|ACP06760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|297540800|gb|EFH76857.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
          Length = 451

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 113/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R   +         +      +K+ A  ++  V
Sbjct: 205 HHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEF---SGEQGEWQAEKITADGSQFHV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 262 LLKGE-RVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|119492219|ref|ZP_01623629.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya sp. PCC 8106]
 gi|119453276|gb|EAW34442.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya sp. PCC 8106]
          Length = 525

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 127/418 (30%), Gaps = 59/418 (14%)

Query: 71  IVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A      ++ A      PI    +    L        G++    +AV GT GK++
Sbjct: 117 VVCSTAIHPENPEYKAAQALGCPIFHRSDILAAL-------IGEY--QSIAVAGTHGKTT 167

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    +      +         +P                       
Sbjct: 168 TSSLIAYMMLEAGLDPTILVGGEVNAWEGNARVGQSP---------------------YL 206

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L       G  TN+  DH D++QT     +      E             
Sbjct: 207 VAEADESDGSLVKFSPAIGIITNIELDHPDHYQTLDQVISTFETFTEHCQTLIGCI---- 262

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  V +R        L       +                             L G
Sbjct: 263 ---DCATVRERIQPQISYSLDPNSGADYTVDAVEYGSDGSLAQVSERGQLLGQLHVKLLG 319

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N L A  +   +G++ + + E +        RFE  G+++       DYAH  + 
Sbjct: 320 QHNLQNTLAAVAVGRLVGLEFSAIAEAISTFEGAKRRFEHRGSSN-DILFIDDYAHHPSE 378

Query: 369 LEMILKNIR---------TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD 418
           +   L   R          I   R++ +F      R Q       +   D AD+ ++TD 
Sbjct: 379 IRATLGAARLRKGSHTATNIPVQRVVAIFQPHRYSRTQTFLSEFSQCFAD-ADLVVLTDI 437

Query: 419 NPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
               E      + +++   I    P    + +  E+++T + E+L   D+ +  G G+
Sbjct: 438 YSAGEANTGQINGQQLADSIGTYHPQVYYRQSL-ESVKTLLSEILKPGDLALFLGAGN 494


>gi|302036917|ref|YP_003797239.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Candidatus Nitrospira defluvii]
 gi|300604981|emb|CBK41314.1| Bifunctional protein FolC: Folylpolyglutamate synthase and
           Dihydrofolate synthase [Candidatus Nitrospira defluvii]
          Length = 431

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKR 399
             GR E V  +     I VD AH   +  ++   +     GR    +    G  RD+  R
Sbjct: 286 WEGRLEIVAESPT---IMVDGAHNPAAAAVLAGYLADWRRGRPGARISLIVGMMRDKHPR 342

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             +  +    AD  I+T  D PR+    ++R  +    P         +A+  A      
Sbjct: 343 EFLAPLLSQ-ADTLILTQADLPRASTGSELRTLLQDCAPTAQVAATPADALTAAKRSAAP 401

Query: 459 QDVLVVAG 466
            D++ V G
Sbjct: 402 SDLICVTG 409


>gi|71891930|ref|YP_277660.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|109892692|sp|Q493Q0|MURC_BLOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71796036|gb|AAZ40787.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 480

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 108/353 (30%), Gaps = 44/353 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH +    I   A  IVVSSA   +  +  A  ++  P++      + LS      +G  
Sbjct: 70  GHKYSN--INN-ANVIVVSSAIHPNNPEILAAKQARIPVIKRA---EMLSELMRFRHG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A++GT GK++  + +  I   +GL                      P+ I     
Sbjct: 122 ----IAISGTHGKTTTTTMIVNIYTAAGLD---------------------PTFINGGIV 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S      + +            +    +  +    TN+  DHI  +Q    Y       
Sbjct: 157 KSEGVHARLGYSRYLIVEADESDNSFLHLHPMVEVITNIDTDHIHEYQGNFEYLKKAFID 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    AI+  DD    E++ +                 I   +     +   V+ 
Sbjct: 217 FLHNLPFYGYAIVCIDDPVICEILPKIKRKIITYGFNKNANLHIFNYRQHIEKSSFTVS- 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                        PG     NA  A  +    GI   ++L+ +        RFE +G  S
Sbjct: 276 RFNQTKLQVTLNAPGCHNALNATAAIAVATEEGISDKIILKTMLDFQGTHRRFENLGYYS 335

Query: 354 RGGRIY--------VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                          DY H    L   +  IRT    R +V+        + K
Sbjct: 336 LNKINDQTGEILLIDDYGHHPAELHATIVAIRTGWPDRRLVMVFQPHRYTRIK 388


>gi|147673270|ref|YP_001216473.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O395]
 gi|262167164|ref|ZP_06034877.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           RC27]
 gi|146315153|gb|ABQ19692.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O395]
 gi|227012818|gb|ACP09028.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O395]
 gi|262024385|gb|EEY43073.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           RC27]
          Length = 421

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 108/368 (29%), Gaps = 22/368 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +           + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINAQDLADEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    +S+     G    L       + ++       GR             
Sbjct: 106 TQAFAHIEQERGDISLSLFEFGTLAALYLFEQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +         +   +   F         +     A  L        A+   ++       
Sbjct: 226 QFSYEKTSATTWNWRSGRFELTDLPIPSLPLPNAATALMALGCSGLAISDINIVDGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   S    I +D AH  +S   +++ +      R I +VFG   D+D       
Sbjct: 286 QLAGRMQVISHQPTIVLDVAHNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD------- 338

Query: 403 GKIALDLADIA-IVTDDNPRSED--PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNK 458
             IA  +A++   VT   P S         A++   +P    +  N + A   A+     
Sbjct: 339 --IASTVAELIPAVTHWYPASLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGA 396

Query: 459 QDVLVVAG 466
           QDV+VVAG
Sbjct: 397 QDVIVVAG 404


>gi|125973556|ref|YP_001037466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|158513249|sp|A3DE94|MURD_CLOTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125713781|gb|ABN52273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           thermocellum ATCC 27405]
          Length = 466

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 113/360 (31%), Gaps = 37/360 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
            +   P  I AVTG+ GK++  + +  + +  G   +  G          +    T   +
Sbjct: 111 FFELCPAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLGGNIGIPLLSKIEEIKDTDKVV 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L               TN+  +H+D H++ + Y +
Sbjct: 171 ------------------LELSSFQLH---TMTKSPNVAVVTNVSPNHLDVHKSMEEYVS 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F     ++   + + +D   +   +   +          +   +    +    + 
Sbjct: 210 AKKNIFRYQSAEDRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDG 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +  T   +  D                 +AA   +   +D  ++ +       V  R E 
Sbjct: 270 ETETEIAKASDIV-----IPGVHNVENFLAATAAVIDCVDRDVIRKVATTFTGVEHRIEL 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +         A +       L + +       +++   G D+      +   IA  
Sbjct: 325 VREINGVKFYNDSIASSPTRTIAGLNSFKD-----KVILIAGGYDKKIPYDALGPVIAEK 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  + ++    P+ E    +R E      G      +  +  EA++ A    +  DV+++
Sbjct: 380 VKCLVLIGQTAPKIEKV--LRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVIL 437


>gi|297539594|ref|YP_003675363.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
 gi|297258941|gb|ADI30786.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
          Length = 452

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 133/396 (33%), Gaps = 47/396 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV S   +L +          + V  +   F        Y      ++A+TG +GK++V
Sbjct: 72  LIVASPGVALSEPEIQAAVQRGVSVAGDVELFAQ------YRPTSAKVIAITGANGKTTV 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V +IC+ +GL +   G        A      TP                     +E 
Sbjct: 126 TTLVGEICKAAGLKTIVAGNIGLPVLDALMME--TPD-----------------VYVLEL 166

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +++ A +  NL  DH+D + + Q Y  AK R     +   +   +   
Sbjct: 167 SSFQLET--TSNLQIDAATMLNLSEDHMDRYASFQDYAIAKAR-----IFYNAKLQVLNR 219

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +M R   A           +  +  K              +         + G 
Sbjct: 220 DDAWSMMMARPKLAQVTFGLDDDGEETSYGLKQVDGDTWLCE--GDKELINLQDLKIVGL 277

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  LC  IG+D A +++ L     +P R E+V                  + 
Sbjct: 278 HNAANALAAVALCRGIGVDYAHIIQTLYNFKGLPHRVEWVANIDDVDYYDDSKGTNVGAT 337

Query: 370 EMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              L  +         VV   GGD + Q   P+   +A + + + ++  D P       I
Sbjct: 338 CAALTGLAQ------KVVLIAGGDGKGQDFTPLAAAVAENASAVVLIGRDAP------LI 385

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A ++       +  +  EA+  A ++    + +++
Sbjct: 386 EAALLPTNIPLYQAADLPEAVNIAKKLAKADEAVLL 421


>gi|222053879|ref|YP_002536241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
 gi|254766051|sp|B9M170|MURD_GEOSF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221563168|gb|ACM19140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
          Length = 453

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 137/411 (33%), Gaps = 51/411 (12%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
           + D H F+        + IVVS    +      +      +V+          A+     
Sbjct: 60  RHDKHTFLMS------DLIVVSPGVPMDISPLLMAKAQRRVVISEI-----ELAAAFIKA 108

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++A+TGT+GK++  +   +I +  G+ +F  G                   I L  
Sbjct: 109 P---MVAITGTNGKTTTTTLAGEIFKACGVETFVGGNIGNPL-------------IELVT 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + + ++      V VE SS  L+   +   +       N+  DH+D + + Q Y +AK+R
Sbjct: 153 SGNDVAQ-----VVVELSSFQLE--GIQRFRPKVAVLLNITEDHLDRYASYQDYIDAKLR 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +FE     +  A++  DD           +            + I   K   ++  Q   
Sbjct: 206 IFENQTVDD-FAVLNVDDPLVAACAATVKSRVFPFSQRKELAEGIFCSKGIIVYRWQGSE 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  +   F       G   + N + A    +  G D       +E    +  R EF+   
Sbjct: 265 LRFDTAAFKLK----GVHNIENIMAALASTLLSGADPIKAGRAVESFKGLRHRMEFIREV 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                          S+   L++       + I +   G D+     P+   +  +    
Sbjct: 321 GGVAYYEDSKGTNVGSVVKSLESFD-----KGITLIAGGKDKGGSYAPL-ADLVRERVKH 374

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            I+       E  E+I AE +  +    +     +A+  A  +    +V++
Sbjct: 375 LILI-----GEAKERIEAE-LGNLTDTHKAATLEDAVAIAHRLAKAGEVVL 419


>gi|254804577|ref|YP_003082798.1| Folylpolyglutamate synthase [Neisseria meningitidis alpha14]
 gi|254668119|emb|CBA04694.1| Folylpolyglutamate synthase [Neisseria meningitidis alpha14]
 gi|254670519|emb|CBA06298.1| FolC bifunctional protein [Neisseria meningitidis alpha153]
 gi|325133792|gb|EGC56448.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis M13399]
 gi|325143919|gb|EGC66229.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis M01-240013]
 gi|325206463|gb|ADZ01916.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis M04-240196]
          Length = 424

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 123/397 (30%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +     R+       ++ V GT+GK SV +++ QI +++G     +     +    +
Sbjct: 24  LERVGEVKKRMKLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGFKVGTLTSPHLLRYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAVNAEPVSDDTIIASFERIEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +    G    +    +D+          ++   +  + +     I   +   K ++ 
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPKSLLS 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V  +    H  +    + + +   S          P P     Y    A
Sbjct: 203 HAEAIGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDGPARNRNALPFPALRGTYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +   +  +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACALTVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +++  +    +   VF    D+D      + +I  D  D   +   D PR    E ++ 
Sbjct: 319 RRSLINLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQN 375

Query: 431 EIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++    I          EA R A     + D +VV G
Sbjct: 376 KLHEHSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|330446607|ref|ZP_08310259.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490798|dbj|GAA04756.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 415

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/396 (15%), Positives = 115/396 (29%), Gaps = 48/396 (12%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +  K +   A  L  K    ++ V GT+GK S  + ++ I   +G           +   
Sbjct: 29  DRVKAVGQKADLL--KPAPCVITVAGTNGKGSTCAMLEAILIEAGYKVGVYSSPHLVRYN 86

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR-- 214
            +           L  +    +   V     + S    +   L  + L      ++    
Sbjct: 87  ERVRINNQ----ELDDSEHTQAFASVEAARGDISLSLFEFGTLSALTLFKTHQVDVVVLE 142

Query: 215 -------DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY----ADDAYSKEVMKRAHNA 263
                  D  +      +   +      + L      I Y       +    +  + H  
Sbjct: 143 VGLGGRLDATNIVDHDVSVITSLAIDHVDWLGDNIDVIGYEKAGIFRSGKPAICGQPHPP 202

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                     G  ++       +  +    + +   FD          + NA  A     
Sbjct: 203 ATVPAHADDIGAELYQVGYQFEYQVEDNHWNWQCGAFDLTQLPLPNLPLPNAATALMALG 262

Query: 324 AIGIDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           A  +D     + +  K   +PGR + V        I +D AH  +S E     +  I   
Sbjct: 263 AAELDISEENIINGLKKAQLPGRMQRVSEQPL---IIMDVAHNPHSAEYFANQLSKIKQK 319

Query: 383 ----RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN--------PRSEDPEKIRA 430
               +I  V     D+D      +      + D    T D+        PR+   E+I  
Sbjct: 320 EGKSKIHAVVAMLHDKD------IASTIAAMRD----TVDDWYPASLTGPRAATAEEILQ 369

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +     GF +  +   A   A+    + D+++V G
Sbjct: 370 HLPANCVGFDKPES---AFDQALTQAGEDDMVIVFG 402


>gi|90579290|ref|ZP_01235100.1| putative folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           angustum S14]
 gi|90440123|gb|EAS65304.1| putative folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           angustum S14]
          Length = 419

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 106/385 (27%), Gaps = 26/385 (6%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +  K +   A+ +  K    ++ V GT+GK S  + ++ I   +G           +   
Sbjct: 33  DRVKAVGEKANLI--KPAPCVITVAGTNGKGSTCAMLEAILIEAGYKVGVYSSPHLVRYN 90

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
            +           L  +    +   V     + S    +   L  + L      ++    
Sbjct: 91  ERVRINNE----ELDDSEHSKAFASVEAARGDISLSLFEFGTLAALTLFKTHKVDVVVLE 146

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +       A       +               D+       K       +    G     
Sbjct: 147 VGLGGRLDATNIVDHDVSVITSLAIDHVDWLGDNIDVIGYEKAGIFRSGKPAICGQPHPP 206

Query: 277 I-----------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                        L +V    + Q        +   F         +     A  L    
Sbjct: 207 ATVPAHADDIGAELHQVGYQFDYQVADDHWSWQCGAFDLSHLPLPNLPLPNAATALMALG 266

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--- 382
             +  +  E++ +          +   S    I +D AH  +S E   + +  I      
Sbjct: 267 TAELDISEENIIQGLSKAQLPGRMQRVSDDPLIIMDVAHNPHSAEYFAQQLNRIKQKEGK 326

Query: 383 -RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
             I  V     D+D      M K  +D    A +T   PR+   ++I   +     GF +
Sbjct: 327 KHIHAVVAMLHDKDIASTIAMMKGVVDHWYPASLT--GPRAATADEILQHLPTDCTGFDK 384

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
                 A   A+   N+ D+++V G
Sbjct: 385 P---EAAFDQALTQANRDDMVIVFG 406


>gi|296270436|ref|YP_003653068.1| FolC bifunctional protein [Thermobispora bispora DSM 43833]
 gi|296093223|gb|ADG89175.1| FolC bifunctional protein [Thermobispora bispora DSM 43833]
          Length = 448

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E    +     + +D AH  + +  +L+ +       RII V     D+D      
Sbjct: 307 PGRLEVARRSPT---VILDAAHNPHGMTAMLEGLTESFGFSRIIAVLAMMRDKDVDAVLD 363

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +  ++   + +VT + +PRS   E++        G           EAI  A+ + ++
Sbjct: 364 LMEPVVE---VLVVTRNSSPRSMSVEELAERAEQVFGEDRVRRAARLDEAIDLAVALADE 420

Query: 459 QD 460
            D
Sbjct: 421 GD 422


>gi|291460888|ref|ZP_06025740.2| tetrahydrofolate synthase [Fusobacterium periodonticum ATCC 33693]
 gi|291380223|gb|EFE87741.1| tetrahydrofolate synthase [Fusobacterium periodonticum ATCC 33693]
          Length = 415

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 123/360 (34%), Gaps = 25/360 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPS-- 166
           ++   ++ +TGT+GK SV++ V+++   +G    +             + +++  +    
Sbjct: 40  QNSYKVIHITGTNGKGSVSTTVERVLIDAGYKVGKYTSPHILKFNERISFNDKYISNEDV 99

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I   K  +         +         +   L+         TN+  + +
Sbjct: 100 AKYYERVKKIIEEHKIQATFFEVTTAMMFDYFKDMKAEYVILEAGMGGRYDATNICDNTV 159

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                        +      +  E   II                     ++  Y     
Sbjct: 160 SVITNVSLDHTEYLGDTIYKIATEKAGIIKNCPYTIFADNNPDVKKAIEEVTDKYVNVLD 219

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             K      +    T ++      + + L G++Q  N L A  +   +GID  +V E ++
Sbjct: 220 KYKDSTYKLDFNTFTTNINIDGNIYEYSLFGDYQYKNFLCAYEVVKYLGIDENIVREAIK 279

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQ 396
           K+     RFE     S+   +  D AH    +E ++K ++   S   + V      D+D 
Sbjct: 280 KVVWQC-RFEVF---SKDPLVIFDGAHNPAGVEELIKIVKQHFSKDEVTVLVSILKDKD- 334

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             R  M +   +++   ++T   DNPR+   +++  ++      F  + + I+A   A+ 
Sbjct: 335 --RISMFRKLNEISSSIVLTSIPDNPRASTAKELYDDV-ENKKDFEYEEDPIKAYNLALN 391


>gi|225028113|ref|ZP_03717305.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
 gi|224954583|gb|EEG35792.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
          Length = 453

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 94/290 (32%), Gaps = 42/290 (14%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+       +    +  N+  DH+D H T + Y + K     +   KE   ++ 
Sbjct: 164 EISSFQLET--TIDFQPEVSAVLNVTPDHLDRHGTMEVYADTKF-SISKKQNKEQVIVLN 220

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++E+ K+A         +    + I L+    I  +    + V          L 
Sbjct: 221 YDDPITREMAKKATARPVMFSRLEELDEGIVLRGDTFIIKEDGKELPVCTTS---EIKLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A G+   +G+    + + + K   V  R E+V T               +
Sbjct: 278 GSHNHENILAAIGITYYMGVPVEQIRDAVMKFTAVEHRIEYVDTVDGVDYYNDSKGTNPD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP-------------IMGKIALDLADIAI 414
           +    +  +      +  ++ G G D+                   +MG  A  +AD   
Sbjct: 338 AAIKGISAMT-----KPTILLGGGYDKKSTYDEWIDAFHGKVRYLIVMGATAQAIAD--- 389

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            T  N              HG    I      EA+  A E     D +++
Sbjct: 390 -TAKN--------------HGFHNVIFADTFEEAMNIAKEKARPGDAVLL 424


>gi|206889186|ref|YP_002248401.1| folylpolyglutamate synthase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741124|gb|ACI20181.1| folylpolyglutamate synthase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 438

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/396 (14%), Positives = 119/396 (30%), Gaps = 35/396 (8%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
             + +S+        H    + + GT+GK SV+  +  + +  GLS              
Sbjct: 26  LNRVISVLEKLGNPHHSFKSIHIAGTNGKGSVSKIIYCLIRAQGLSVGLFTSPHLTRFTE 85

Query: 158 QDNRLTT---------------PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR---- 198
           +                     P    L                       ++       
Sbjct: 86  RIIVNDIEISEEEVEHLIEKIKPFSDELTFFEYVTVMALQYFKEKGIEYAVIETGMGGRL 145

Query: 199 --LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
              + +  +    TN+G DH ++     A    +     +       +    +       
Sbjct: 146 DATNVVNPLISVITNIGLDHQEFLGADLASIAKEKAGIIKNGIPVVSSSQKKEVEKVIIK 205

Query: 257 MKRAHNAGCRVLSVGYQG--KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
                 +   +    + G  K + L+ +           S      +   PL G  Q+ N
Sbjct: 206 KAEEMESPLFIYDRDFIGVLKSMSLEGIVFDFYPFSFQPSTSSLQSNLFLPLTGFHQLEN 265

Query: 315 ALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
             VA         + +   ++   K   +PGR E             D AH  ++ E+++
Sbjct: 266 VSVALKAFINIYPMYNENAIKEGLKNVKIPGRLEI---IYDKPLAVFDIAHNPDAAEVLI 322

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEI 432
           K+++T+T  + +VVF    D++        K   + A   I T  N  R+   +++   +
Sbjct: 323 KSLKTLTDKKPVVVFAMMRDKNVN---EFIKCFENYAYKMIFTVPNYERALTYKELLKRL 379

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQ-DV-LVVAG 466
                        +EA R AI +     D+ ++  G
Sbjct: 380 ND--KKIDFVPEPLEAFRNAISLCKNNSDIYVLCTG 413


>gi|325571375|ref|ZP_08146875.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325155851|gb|EGC68047.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 452

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 99/279 (35%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D ++      TN+   HIDYH ++  Y  AK RL + +   +   I 
Sbjct: 168 MELSSFQL--MGIDTLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTADDYLVIN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +        +   +  +  +++    + K      +  +   ++  I    +       +
Sbjct: 226 WNQPE----LEALSAKSKAKIIPFSTKEKVAGAYMLDGMLYYKEEAIMAAEE-----LGV 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R ++V T ++        A   
Sbjct: 277 PGAHNIENALAAIAVGKLCNMPNEAIKQALQTFTGVPHRTQYVTTINQVKFFNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L           +V+   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALGGF----DNEKLVLLAGGLDRGNSFDELVPALKGLKAIVVF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+ +     G+       N   A+  A  +    D +++
Sbjct: 386 KLASAAQAAGVKTIEMTDNVETAVPVAFSLSAAGDTILL 424


>gi|323494203|ref|ZP_08099317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
 gi|323311544|gb|EGA64694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
          Length = 451

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 107/359 (29%), Gaps = 34/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESVFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             ++   + GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDMDLEDVLSRGCWSETEFSGKQGDWQAEKLIADGSQFK 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 +     + L G+  V NAL+A      +G+   L  E L K      R E  G 
Sbjct: 261 VFFQGEEVGIVNWDLVGDHNVDNALMAIAAARHVGVTPDLACESLAKFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGC---GGDRDQGKRPIMGKIA 406
              G  +Y D+AH   ++E+ L  +R       +II V         R   K  +   +A
Sbjct: 320 EVNGVTVYDDFAHHPTAIELTLGGLRNKVGDDNKIIAVLEPRSATMKRGVHKDTLAASLA 379

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
              AD   +       E  E    +I        +  +   + +   +      D ++V
Sbjct: 380 --KADEVFLYQP----ESIEWSVEDIARQCQQPAQVSDSVDQLVDKIVSSAKSGDHILV 432


>gi|212712253|ref|ZP_03320381.1| hypothetical protein PROVALCAL_03339 [Providencia alcalifaciens DSM
           30120]
 gi|212684999|gb|EEB44527.1| hypothetical protein PROVALCAL_03339 [Providencia alcalifaciens DSM
           30120]
          Length = 442

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 110/381 (28%), Gaps = 41/381 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS-------------FAQ 158
           +    ++ VTGT+GK +    ++ I   +GL          +                A 
Sbjct: 60  QPAPRVITVTGTNGKGTTCHTLEAILMAAGLKVGVYSSPHLVRYTERVRIQGKELTENAF 119

Query: 159 DNRLTTPSP----IYLAKALSYLSSQGVTHVSVEASSHGLD------QHRLDGIKLIAGS 208
                T       I L        +        E     L+          + +     +
Sbjct: 120 CQAFATIEAQRGNISLTYFEYGTLAALQLFKQAELDIVILEVGLGGRLDATNVVDADIAA 179

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T++  DH D+  + + +   +                   DA      K       R  
Sbjct: 180 ITSIALDHTDWLGSDREHIGHEKAGIFRQGHYGVVGEPDMPDAIGAYADKIGTMLFRRGK 239

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              YQ    H        + + + +         L        V + L+     +A  I 
Sbjct: 240 DWHYQEYADHWSWESPQRSWEDLPLPN-----VPLANAATAMGVISCLMEIDPVLAQKIT 294

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RII 385
           +  + + L    + PGRF+ +G       + +D AH  ++   ++  +  +      RI 
Sbjct: 295 NKAIHQGLSTAQL-PGRFQIIGE---NPLMILDVAHNPHAAGYLVSKLAQLPRREGRRIR 350

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            V G  GD+D             L+         P  E       E+   I G  E  + 
Sbjct: 351 AVVGMLGDKDIQG------TLTCLSQQVTDWYLAPLREFRGADVTELSKHIDGAHEFDSV 404

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A R A      QDV+VV G
Sbjct: 405 EAAWRQACVDAKPQDVIVVCG 425


>gi|198245520|ref|YP_002216438.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207857783|ref|YP_002244434.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224583145|ref|YP_002636943.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|197940036|gb|ACH77369.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|206709586|emb|CAR33931.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467672|gb|ACN45502.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 422

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 116/391 (29%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPT 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V            V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SRLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +  +A + AI+    +D ++V G
Sbjct: 376 N----VYDSVAQAWQAAIDAAQPEDTVLVCG 402


>gi|296104001|ref|YP_003614147.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058460|gb|ADF63198.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 422

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 115/382 (30%), Gaps = 34/382 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            + A     K    +  V GT+GK +    ++ +   +G           +    +    
Sbjct: 37  QVAARLDVLKPAPFVFTVAGTNGKGTTCRTLEAVLMAAGYKVGVYSSPHLVRYTERVRVQ 96

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            +     L ++    S   +     E S    +   L  + L   +  ++    +     
Sbjct: 97  NS----ELPESAHTASFAEIEAARGEISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR 152

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       +                D  S    K       +   VG       +  V
Sbjct: 153 LDATNMVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRTNKPAVVGEPDMPHTIADV 212

Query: 283 CA--------IHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGID 328
                          Q  +   G  +          PLP   Q   A   A L  +    
Sbjct: 213 AKEKGAHLLRRGVDWQYEVQNNGWRYRDAQGTLENLPLPQVPQPNAATALAALRASGLAV 272

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVV 387
           S   +    +  ++PGRF+ V    R   + +D AH  ++   +   ++++   GR++ V
Sbjct: 273 SEQAIRDGIQNAILPGRFQIVSDAPR---LILDVAHNPHAAAYLAARLKSLPKTGRVLAV 329

Query: 388 FGCGGDRDQGKRPIMGKIALDLA--DIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            G   D+D G     G +A   +  D       + PR    E++   +  G        +
Sbjct: 330 IGMLHDKDIG-----GTLACMESVVDSWYCAPLEGPRGATAEQLLEHLGKGA----IYNS 380

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             +A + A+     +D ++V G
Sbjct: 381 VAQAWQAAMADAKPEDTVLVCG 402


>gi|269101758|ref|ZP_06154455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161656|gb|EEZ40152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 447

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 131/397 (32%), Gaps = 55/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        +   + +V +              +  + ++A+TG++GKS
Sbjct: 69  ADLIVASPGIALATPELVTAAQAGVEIVGDIE--------LFAREVTKPVVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +G+     G                 + + +      L         +
Sbjct: 121 TVTSLVGEMAKEAGIDVGVGGNIG-------------FAALDMLAQNHEL-------YVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      + L A  + NL  DH+D +Q  + Y  AKMR+F             
Sbjct: 161 ELSSFQLET--TSSLHLAAAVYLNLSEDHMDRYQGLEDYSQAKMRIFHHANLAVYNRNDL 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A                     +   G       +  I +++ + I+ +         L 
Sbjct: 219 ATKPTDFTGA------------MTSFGFDDQDYGLVLIDDREWLAINQQPLMPADEIALV 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N+L A  L  A GID       L +   +  R +   T      +    A    
Sbjct: 267 GRHNVANSLAALALADAAGIDREAACRALRRYTGLAHRCQLAVTKHGVRWVNDSKATNVA 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +    +G++ ++ G  G     K     ++   LAD+ +         D  +
Sbjct: 327 STEAALNGLNL--AGKLHLLVGGDG-----KGADFSELKTVLADLNV--QLYCFGRDGYQ 377

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   I      +A+  A       D++++
Sbjct: 378 FAEL----VDNAILVETMAQAMELAASTAQSGDMILL 410


>gi|260578085|ref|ZP_05846007.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603825|gb|EEW17080.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium ATCC
           43734]
          Length = 498

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 116/416 (27%), Gaps = 29/416 (6%)

Query: 70  AIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +    +  P+L   +    L                 + GT GK
Sbjct: 76  VVVTSFAAIPQDNPELVGAREAGIPVLRRSDILALL---------LQDRRAFLLAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS---SQGVT 183
           +S  S      Q +G           ++    +    T          S  S        
Sbjct: 127 TSTTSMAVAALQAAGQD-PSFAIGGQLNRAGTNAHNGTGEIFVAEADESDGSFLSYSPEI 185

Query: 184 HVSVEASSHGLDQHRLDGIK--LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
            V        LD  + +     +       +                A          + 
Sbjct: 186 AVVTNIEPDHLDYFKTEAAYREVFENFAHRIVPGGFLVVCLDDPGSAALAENLIAGAEEG 245

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
           +P         + E      +     +    +           +  + +         + 
Sbjct: 246 TPLPFTVVGYGTAEGCDAHPSVPPAAIIESTEVTAEGTVSALRLTEEVKKAAEEAAGTYS 305

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG   V NA  AA   + +G D   V+  +     V  RFE+ GT      +Y D
Sbjct: 306 LRVAIPGIHMVLNAAAAALGSVLLGADVDKVIGGIGGFDGVRRRFEYHGTRQ-DVEVYDD 364

Query: 362 YAHTSNSLEMILKNIR---TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
           YAH    +  +L   R       GRI+ VF      R         + AL LAD  ++ D
Sbjct: 365 YAHHPTEVAAVLAAARQRVEARGGRIVAVFQPHLYSRTINFADEFAE-ALSLADQVVLLD 423

Query: 418 DNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E+P +     I    I     ++ + +          ++   D+++  G G
Sbjct: 424 IFGAREEPVEGVDSRIIGNKISASTEWVFEPDFSNVSNVVAGLVQPGDMVLTIGAG 479


>gi|291523761|emb|CBK89348.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale DSM
           17629]
          Length = 459

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 85/273 (31%), Gaps = 10/273 (3%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  +H+D+ +      ++        L   +  I    D   +E++      
Sbjct: 179 PRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID-SYEEIVAGLPQK 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                       +                +      FD    +PG   V NAL A  L  
Sbjct: 238 IITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIALST 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+D   +L  L+K      RF++ G    G  I  DYAH    +   L   +     R
Sbjct: 298 TLGLDEESILTGLDKFGGADRRFQYKG-KVNGVTIIDDYAHHPTEIRATLTAAQKYPHDR 356

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGI 436
           +++ F      R +        +   +AD+ ++ D     E        + I   ++   
Sbjct: 357 LVLCFQPHTYSRTKAFLNDFADVLS-MADVVVLADIYAAREQNTYGISSKDILDLLLEKG 415

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  +  E  +   E     D+L+  G G+
Sbjct: 416 VNAHYFPSFEEIEKFLSENCVNGDLLITMGAGN 448


>gi|154498342|ref|ZP_02036720.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
 gi|150272653|gb|EDM99831.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
          Length = 491

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 143/410 (34%), Gaps = 43/410 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++  +A +  D      ++   + V    +              +N L ++GT G
Sbjct: 104 KGAKLVI-RTAAAHDDNPEISGAHARGIPVFERAQAWGAIMRGY-----KNALCISGTHG 157

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    I   +      +    T+      +R+     I L       S       
Sbjct: 158 KTTTTSMCTHIAMAAQADPTVM-IGGTLPLLGAGHRVGRGDTIILESCEYCNSFLSFF-- 214

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                                    ++  DH+D+ +  +    +  R F +L+P++   +
Sbjct: 215 ------------------PTVAVILDIEADHLDFFKDLEDVEKS-FRTFADLVPEDGVIV 255

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLF 304
              DD  +   ++        +++ G +   +H   +          +  +G+ F     
Sbjct: 256 ANRDDENTMHTLE---GEARPMVTFGLEEGDVHAANLTWSRGLPTFDVIWKGQPFAHVSL 312

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PGE  V NAL AA   I +G+ +  V E L        RFE    +  G  +Y DYAH
Sbjct: 313 RVPGEHNVKNALAAAASAIVLGMPAKAVEEGLSAFRGAARRFE-HKGSYHGAEVYDDYAH 371

Query: 365 TSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALD-----LADIAIVTDD 418
               L+ +L  +  +   RII  F      R +       ++  +     LA+I    +D
Sbjct: 372 HPGELKALLSAVSGLGYDRIICAFQPHTYSRTKALFDDFVQVLREPDVTLLAEIFAARED 431

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           N        + A+I  G   F       +A+    E+    D+++  G G
Sbjct: 432 NTIGISSRDLAAQI-PGSRYFATLPELTDALA---ELAQPGDLILTVGAG 477


>gi|332749822|gb|EGJ80235.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333011221|gb|EGK30635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-272]
          Length = 381

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 26  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 84

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 85  EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 126

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 127 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 186

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 187 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 245

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 246 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 300

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 301 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 356


>gi|15642537|ref|NP_232170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587894|ref|ZP_01677650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|153817994|ref|ZP_01970661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|153822958|ref|ZP_01975625.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229507403|ref|ZP_04396908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229509672|ref|ZP_04399153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229516797|ref|ZP_04406243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229606910|ref|YP_002877558.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254851084|ref|ZP_05240434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262154693|ref|ZP_06028819.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
 gi|9657126|gb|AAF95683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547864|gb|EAX57949.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|126511429|gb|EAZ74023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|126519528|gb|EAZ76751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229345860|gb|EEO10832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229353146|gb|EEO18085.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229354908|gb|EEO19829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229369565|gb|ACQ59988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254846789|gb|EET25203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262030533|gb|EEY49171.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
          Length = 451

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 113/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R   +         +      +K+ A  ++  V
Sbjct: 205 HHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEF---SGEQGEWQAEKITADGSQFHV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 262 LLKGE-RVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|312127461|ref|YP_003992335.1| folc bifunctional protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311777480|gb|ADQ06966.1| FolC bifunctional protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 437

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 9/155 (5%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N + A              L          GRFE +        + +D AH  + +++++
Sbjct: 271 NCVYAYECLKEKYDIKIEALVRGLLNARWNGRFEVLIDTPL---VVLDGAHNIDGMKVLV 327

Query: 374 KNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAE 431
           +N +   +G+ IV V G   D++  K   M  +   +    I T   + +    EK   E
Sbjct: 328 ENCKIYLNGKKIVAVVGILKDKEYEK---MISLIKSVVQRVIFTLVPSQKRAFSEKEALE 384

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I +   G     +  +AI+ A+ + ++   +++ G
Sbjct: 385 ISNKF-GVEFIPDFRDAIKYALGLCDEDGAVIICG 418


>gi|310828116|ref|YP_003960473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
 gi|308739850|gb|ADO37510.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
          Length = 458

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 138/396 (34%), Gaps = 46/396 (11%)

Query: 71  IVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S      +   +   R   P++         +  A  +        +A+TGT+GK++
Sbjct: 77  VVTSPGVPLTIPIIAEAYRCGVPVIG-------EAELAYCMTKAP---FVAITGTNGKTT 126

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             +   +I + SG  ++ +G                  PI      +            E
Sbjct: 127 TTTLTGEIFKNSGRKTYTVGNIG--------------DPISNYVMEAA----PEDVFVAE 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S+  L+   ++  + +A +  NL  DH+D + T + Y  AK R+FE    ++   +  A
Sbjct: 169 ISAFQLET--INKFRPVASAILNLSPDHMDRYGTMENYIAAKARIFENQRGEDFLVL-NA 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD    E+ ++A              +  +        N  +  I +   +      + G
Sbjct: 226 DDEQVCELGRQAQCRKYYFSLDKKVAQGAYAMDGGIFINDNESVIPICRIE---EMGIKG 282

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL A  L   +G+D   + E L+    V  R EFV T      I       +N+
Sbjct: 283 PHNVQNALAATVLAYFMGVDVVSIAETLKSFGGVEHRQEFVATIGGVDYINDSKGTNTNA 342

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             + L  +         V+   GG   +       ++        ++      +  P+  
Sbjct: 343 AIVALNAMTK------PVILIAGGYDKKEDYSEFIEVVCKKVKRMVLV----GATAPQIE 392

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A    G    +  G+  EA++ A E     DV+++
Sbjct: 393 AAAESQGYYSTVRVGDYDEAVKVASECAAPGDVVLL 428


>gi|256160167|ref|ZP_05457861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M490/95/1]
 gi|256255373|ref|ZP_05460909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           B1/94]
 gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
 gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
          Length = 467

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|228954740|ref|ZP_04116762.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804938|gb|EEM51535.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 433

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 104/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +            +           +   + +         G   +    V      
Sbjct: 221 LYELSKHFTALHKQSNEDGEQFDFTCPFSAFEDLQISMKGIHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +          GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEEIRTGLLEAYWIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIAENDVFIITG 417


>gi|254225932|ref|ZP_04919534.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
 gi|125621558|gb|EAZ49890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
          Length = 451

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 113/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R   +         +      +K+ A  ++  V
Sbjct: 205 HHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEF---SGEQGEWQAEKITADGSQFHV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 262 LLKGE-RVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|90411962|ref|ZP_01219970.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum 3TCK]
 gi|90327220|gb|EAS43592.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum 3TCK]
          Length = 452

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 109/361 (30%), Gaps = 38/361 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV GT GK++ AS +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVAGTHGKTTTASMLAWILEDCGYEPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLKAIQ---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P+          E +++  + GC             + K          
Sbjct: 202 -RQFHHLVRTVPSNGRILAPKGVESIQQTLDMGCWSELEFTGDDGHWIAKKQMTDGSVFD 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VYLDGLMIGTVRWDLVGDHNVSNALMAIAAARHVGVTPDLGCEALATFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +G ++Y D+AH   ++E+ L  +R       RI+ V     +  +      G IA  L
Sbjct: 320 EVKGVKVYDDFAHHPTAIELTLGGLRAKVGDEQRILAVLEPRSNTMKLGVHK-GDIAPAL 378

Query: 410 --ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLV 463
             AD   +         P+ I     EI  G         +  + +   +      D ++
Sbjct: 379 NAADYVFIYQ-------PDTIPWSVNEIADGCSQPAATDIDLDKLVDKIVTEAKDGDTIL 431

Query: 464 V 464
           V
Sbjct: 432 V 432


>gi|86609024|ref|YP_477786.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|109892749|sp|Q2JL88|MURC_SYNJB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86557566|gb|ABD02523.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 478

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/415 (14%), Positives = 122/415 (29%), Gaps = 49/415 (11%)

Query: 71  IVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V SSA      + +A +     +    +    L          +  + + V GT GK++
Sbjct: 82  VVYSSAIRPTNPELAAALGKGLTVWHRADLLAAL---------FNRRSGIGVAGTHGKTT 132

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +G     I     + ++  + RL                     +   E
Sbjct: 133 TSSMIGYVLLSAGWDPTLI-IGGEVDAWDGNARLGKGE-----------------YWVAE 174

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                    R   +    G  TN+  DH D++        A  +  ++     +      
Sbjct: 175 VDESDGSLVR---LYPKIGVITNIELDHPDHYADLGQVIRAFQQYGQQSQTLVACL---- 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  V           L+   Q ++   + +                       + G
Sbjct: 228 ---DCPNVAAHLRVDVGYSLTGHPQAQYQARQILYTASFTCAEIWEKGSLLGQLRLQVLG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NAL A  +   +G++ A++   L +      RFE       G     DYAH  + 
Sbjct: 285 SHNLSNALAAVAVGRQLGLEFAVIASALAQFRGAHRRFE-HKGEVGGVTFIDDYAHHPSE 343

Query: 369 LEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---- 423
           +   L+  R +   R++ VF      R         +   + AD+ ++       E    
Sbjct: 344 IRATLQAAR-LQQRRVVAVFQPHRHSRLAALFQDFARCFGE-ADVVVIVPTYGAGEPAPE 401

Query: 424 --DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVT 476
             D  ++   +    P      +  +       +L   D+ V  G G     I+ 
Sbjct: 402 GSDSLRLAVAVAEHHPHVRYVSSLPQLPEVLPSVLQPGDLAVFLGAGDLNQQIIA 456


>gi|68535826|ref|YP_250531.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium jeikeium
           K411]
 gi|109892701|sp|Q4JW94|MURC_CORJK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68263425|emb|CAI36913.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium jeikeium
           K411]
          Length = 498

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 130/437 (29%), Gaps = 71/437 (16%)

Query: 70  AIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD    +    +  P+L   +    L                 + GT GK
Sbjct: 76  VVVTSFAAIPQDNPELVGAREAGIPVLRRSDILALL---------LQDRRAFLLAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q +G           ++    +    T          S  S    +   
Sbjct: 127 TSTTSMAVAALQAAGQD-PSFAIGGQLNRAGTNAHNGTGEVFVAEADESDGSFLSYS--- 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+DY +T ++ +      F   +      ++
Sbjct: 183 -----------------PEIAVVTNIEPDHLDYFKT-ESAYREVFEKFAHRIVPGGFLVV 224

Query: 247 YADDAYSKEVMKR-------AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-- 297
             DD  S  + +         +     V+  G          V      +   ++ EG  
Sbjct: 225 CLDDPGSAALAEELIAGAEEGNPLPFTVVGYGTAEGCDAHPSVPPAAIIESTEVTAEGTV 284

Query: 298 -----------------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                              +     +PG   V NA  A    + +G D   V+  +    
Sbjct: 285 SALRLTEEVKKAAEEAAGTYSLRVAIPGIHMVLNAAAAVLGSVLLGADVDKVIAGIGGFD 344

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---TITSGRIIVVFG-CGGDRDQ 396
            V  RFE+ GT      +Y DYAH    +  +L   R       GRI+ VF      R  
Sbjct: 345 GVRRRFEYHGTRQ-DVEVYDDYAHHPTEVAAVLAAARQRVEARGGRIVAVFQPHLYSRTM 403

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEK-----IRAEIIHGIPGFIEKGNRIEAIRT 451
                  + AL LAD  ++ D     E+P +     I    I     ++ + +  +    
Sbjct: 404 NFADEFAE-ALSLADQVVLLDIFGAREEPVEGVDSRIIGNKIDASTDWVFEPDFSKVSSV 462

Query: 452 AIEMLNKQDVLVVAGKG 468
              ++   D+++  G G
Sbjct: 463 VAGLVQPGDMVLTIGAG 479


>gi|291279000|ref|YP_003495835.1| UDP-N-acetylmuramate-alanine ligase [Deferribacter desulfuricans
           SSM1]
 gi|290753702|dbj|BAI80079.1| UDP-N-acetylmuramate-alanine ligase [Deferribacter desulfuricans
           SSM1]
          Length = 460

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 120/386 (31%), Gaps = 45/386 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +V SSA    +       +   P++        L+           +  + V+G+ GK+
Sbjct: 67  VVVYSSAIKEDNPELISAKDRHIPVIKRGEMLAELTRL---------KRSITVSGSHGKT 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S +  I   + L    +     ++S  Q+  L            S  S         
Sbjct: 118 TTTSMIAHIFIEAKLDPTIV-IGGRLNSSGQNAVLGKGDYFICESDESDRSFLL------ 170

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                         +       TN+  +H+D +Q  +   +A +    ++       +  
Sbjct: 171 --------------LYPTINVVTNIDLEHLDVYQDLEDIKSAFIEYCNKIPFYGLNLLCI 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +   +  +                  +  ++ +   I        S +        P  
Sbjct: 217 ENQNVTDIIPSIEKRFQTYGFKKSADIRADNIIQDGYISTFDVYYFSEKLGRIHLNTPGI 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
               V N+L A G+ I  GI   ++ E L+    V  R            +  DY H   
Sbjct: 277 --HNVLNSLGAIGVAIECGITFDVIKEALKNFQGVERRLSI-RYKDERRVVIDDYGHHPT 333

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP 425
            ++  L+++R++     IV         + K  ++ + A      DI IVTD    SE P
Sbjct: 334 EIKATLQSVRSLYPDYKIVTIFQPHRYTRTK-ALLNEFASSFYDTDILIVTDIYAASEAP 392

Query: 426 -EKIRAEI------IHGIPGFIEKGN 444
            E + ++I      + G+       +
Sbjct: 393 IEGVSSDILVEKIKMQGLKDVYYIAD 418


>gi|241191221|ref|YP_002968615.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196627|ref|YP_002970182.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|240249613|gb|ACS46553.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240251181|gb|ACS48120.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295794214|gb|ADG33749.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 513

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 51/175 (29%), Gaps = 13/175 (7%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG     NA  A    + +G+D+               RF+  G       +  DYAH
Sbjct: 318 RIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFLGANRRFQIRG-TVSDITVVDDYAH 376

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +  +LK  R       + V        R Q         AL LAD  IVT   P  
Sbjct: 377 HPTEITALLKAARRRYPDSQLHVLFQPHLFSRTQFFAQEFAD-ALSLADDVIVTGIFPAR 435

Query: 423 ED--------PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E         P  I       G        +   A +         DV+   G G
Sbjct: 436 EKQSDFPQVTPNTIVDNAHGDGSYEIEAVDDMSLAAQMLAMRAQPGDVIFTVGAG 490


>gi|291287764|ref|YP_003504580.1| FolC bifunctional protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884924|gb|ADD68624.1| FolC bifunctional protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 379

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 117/376 (31%), Gaps = 37/376 (9%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           L +D  R   S  +  +     + ++ + GT+GK S A+F++QI +  GL++        
Sbjct: 22  LTLDRIRSAASECS--IDDNIAKTVIHIAGTNGKGSTAAFIEQILKHRGLTTGCYSSPHI 79

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           IS   +     +              +       ++A     D    +G+ LIA      
Sbjct: 80  ISIEERIRINGS---------DIKRETFDDLFNDLKAVIVKHDLSYFEGLTLIAFK---Y 127

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            +D++      +     +      L  K       + D            A  ++  V  
Sbjct: 128 FKDNMPDAAIIETGLGGRFDSTNILERKIPVITSISKDHVEYLGDDVLQIADEKIAIVKN 187

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                       ++      +  +       +                       D  + 
Sbjct: 188 NLLVFVGSNTEYMNKYLDYKLHSKT-IVRAKYSSSEYMGQSYPFSDNLRLAESVCDYIVS 246

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
               E   + P R E  G         ++ AH  ++L  + +        +  V+F    
Sbjct: 247 GTMPESFKLPPCRGEVFGR------FILEGAHNEDALTKLAE---RFRGKKPTVIFSTTN 297

Query: 393 DRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           DRD      + +I    +D  I+T   DN RS +   I           I++    +A++
Sbjct: 298 DRDTM---ALLEIIKTFSDTIILTTIPDNERSINLNDIS-------TNIIKEEAPGQALK 347

Query: 451 TAIEMLNKQDVLVVAG 466
            A+E+    D ++V G
Sbjct: 348 IAVELSENAD-ILVCG 362


>gi|183602425|ref|ZP_02963791.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|183218344|gb|EDT88989.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium animalis
           subsp. lactis HN019]
          Length = 511

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 51/175 (29%), Gaps = 13/175 (7%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG     NA  A    + +G+D+               RF+  G       +  DYAH
Sbjct: 316 RIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFLGANRRFQIRG-TVSDITVVDDYAH 374

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +  +LK  R       + V        R Q         AL LAD  IVT   P  
Sbjct: 375 HPTEITALLKAARRRYPDSQLHVLFQPHLFSRTQFFAQEFAD-ALSLADDVIVTGIFPAR 433

Query: 423 ED--------PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E         P  I       G        +   A +         DV+   G G
Sbjct: 434 EKQSDFPQVTPNTIVDNAHGDGSYEIEAVDDMSLAAQMLAMRAQPGDVIFTVGAG 488


>gi|16273065|ref|NP_439297.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae Rd
           KW20]
 gi|260580223|ref|ZP_05848053.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
 gi|1171071|sp|P45066|MURC_HAEIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33356936|pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356937|pdb|1GQQ|B Chain B, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356938|pdb|1GQY|A Chain A, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|33356939|pdb|1GQY|B Chain B, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|1574695|gb|AAC22794.1| UDP-N-acetylmuramate--alanine ligase (murC) [Haemophilus influenzae
           Rd KW20]
 gi|260093507|gb|EEW77440.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
          Length = 475

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 117/377 (31%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA    +     + +   P++      + L+      +G  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVTSKQKRIPVIQRA---QMLAEIMRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN+  DH+D ++       A    
Sbjct: 173 EADESDASFLHLQPMVS-----------------VVTNMEPDHMDTYEGDFEKMKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E++ +                 I   +           I
Sbjct: 216 FLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFI 334

Query: 354 RGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           R     R+  DY H    + + +K  R     + IV+        + +       ++   
Sbjct: 335 RPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ 394

Query: 409 LADIAIVTDDNPRSEDP 425
             D  I+ D     E P
Sbjct: 395 -VDALIMLDVYAAGEAP 410


>gi|326803166|ref|YP_004320984.1| bifunctional protein FolC [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651564|gb|AEA01747.1| bifunctional protein FolC [Aerococcus urinae ACS-120-V-Col10a]
          Length = 433

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 111/372 (29%), Gaps = 30/372 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + + GT+GK S AS + +  Q +G         S +S   +             +A+   
Sbjct: 42  VHIAGTNGKGSTASMIARTLQLAGYKVGLYTSPSLVSFNERIRINGENIADGKLRAMKDY 101

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--------------FTNLGRDHIDYHQTQ 223
             + +    ++ S   L       I                     TNL +  +    T+
Sbjct: 102 MKEKLAGTKIQCSEFELFTAMAWLIFFHEDCDIIVLEVGLGGRLDATNLVKSPLVSVITK 161

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAY---SKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            A  +  +         +  A I              +            G   K I  +
Sbjct: 162 IALDHENILGHTISEIAKEKAGIIKYYTPVVVYPYPKEAIEVLSATAERQGAPLKTIDTE 221

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV--AAGLCIAIGIDSA-LVLEHLE 337
            +  IH + +  +     +   L  L     +   L   A       G +     ++   
Sbjct: 222 SIENIHPEDRQQVFTYKGENYHLNLLGKHQVLNACLAIEALAEIKRAGFNVELKQIKEAL 281

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +    PGRFE      +   I +D +H  + +  +   +         +       RD+ 
Sbjct: 282 QTVSWPGRFE---WVHQDPEIIIDGSHNLDGVRAMRHAVEDYFPNIPRLGITGM-LRDKD 337

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIPGF--IEKGNRIEAIRTAI 453
              ++G++     +I  +T D+ R+    ++     ++ G+         N  +A+  A 
Sbjct: 338 VYRMLGEVVHLFDEIVTITPDSDRAMTASELTKATHMVTGLQKVNTYTAQNNEDAMAYAR 397

Query: 454 EML--NKQDVLV 463
                 + D L+
Sbjct: 398 RWADQQEGDCLI 409


>gi|256839659|ref|ZP_05545168.1| folylpolyglutamate synthase [Parabacteroides sp. D13]
 gi|256738589|gb|EEU51914.1| folylpolyglutamate synthase [Parabacteroides sp. D13]
          Length = 439

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/383 (13%), Positives = 107/383 (27%), Gaps = 33/383 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSP 167
                 + V GT+GK SV+  +  I ++SG           +           +++    
Sbjct: 43  HKAYKTIHVAGTNGKGSVSHLLAAILRQSGFKVGLYTSPHLVDFRERIRVNGKKISQDYV 102

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHR-------------------LDGIKLIAGS 208
           +   +                 SS   +  R                    + I  I   
Sbjct: 103 VDFVERHRSFFEPLHPSFFELTSSMAFEYFRDQQVDYAVIEVGLGGRLDSTNIITPILSI 162

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH  +    +    A+     +     +        +       +A   G    
Sbjct: 163 ITNISLDHTQFLGDTEEKIAAEKAGIIKK-GVPALLGEAEKQSVYDVFKNKAEEVGAPFY 221

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                       ++         ++       +      +     V +A+      + I 
Sbjct: 222 YAQRMDMVKDECRLTVGGKWFFPSVEYGEIQGELGGEVQVRNAVTVLSAIHILRTELGID 281

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRI 384
           I    V E    +  + G      T      +  D  H     E + ++++      G+I
Sbjct: 282 IIPEAVHEGFAHVTKLTGLMGRWQTLQSKPTVICDTGHNVGGWEHLAEHLKVLRQYCGQI 341

Query: 385 IVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            ++ G   D+D      +M + A      A V    P  ED       + HG+ G +   
Sbjct: 342 YMIVGMVNDKDIDGVLSLMPQDAFYFFTQASVERAMPV-EDFA--VKAMRHGLSGTL-CD 397

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
              +A+  A+    + D++ + G
Sbjct: 398 TVQDAVEKALRRARENDLIFIGG 420


>gi|224540980|ref|ZP_03681519.1| hypothetical protein CATMIT_00131 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526131|gb|EEF95236.1| hypothetical protein CATMIT_00131 [Catenibacterium mitsuokai DSM
           15897]
          Length = 436

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 105/357 (29%), Gaps = 47/357 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++V +A+   +       + P + + +   FL+              + + GT GK+S  
Sbjct: 62  VIVGNAFDRSNEEVAAAEDNPNVTIHHYYDFLAKLMD------DHITIGIAGTHGKTSTT 115

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
                + +    ++  IG               T      AK       +   H      
Sbjct: 116 GMAYHLFKDYDKTNVLIG-------------DGTGYATKGAKYFIAECCEYKDHFLW--- 159

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                               N+  DH+DY ++ + Y  +    FE+   +   AI+   D
Sbjct: 160 -----------YHPDYSYINNIEMDHVDYFKSMEQYEQS----FEKYANQAKKAIVIWGD 204

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 +          +  G   +  ++       +            F    P  G  
Sbjct: 205 DPHLPHLNYTKRVVKFGVKDGNDVQAKNVINNEKGLSFDVYIYGDLFGHF--TLPFYGMH 262

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +YN L    L    G+D   +   L        R+              DYAH   +++
Sbjct: 263 TLYNTLGVITLGYLEGMDFDYMQSQLSTFKGTKRRYAVK--EVGNNVYVDDYAHHPTAIK 320

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +++  RT   G+ IV         +G R      A D A   + T D+P   D  K
Sbjct: 321 YVIEETRTRFPGKQIVAVYQPDRYSRGLR-----FAKDYA-RIMDTVDHPYFVDFPK 371


>gi|163846336|ref|YP_001634380.1| UDP-N-acetylmuramate--alanine ligase [Chloroflexus aurantiacus
           J-10-fl]
 gi|189028982|sp|A9WG70|MURC_CHLAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163667625|gb|ABY33991.1| UDP-N-acetylmuramate--alanine ligase [Chloroflexus aurantiacus
           J-10-fl]
          Length = 474

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 127/421 (30%), Gaps = 26/421 (6%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A  QGA+ ++ ++A           +   I      R   +        + P 
Sbjct: 52  GHD---PAYVQGADVVLATAAIRGTHPELEAAAAAGI-----PRLSRADLWRLWSEQRP- 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++A+ GT GK++  +      + +G+    +   + + +     +   P    + +A  
Sbjct: 103 -VIAIAGTHGKTTTTALTALALRGAGIRCGFL-IGADVPALGGSAQWGDPEAPLVIEADE 160

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           Y         ++   ++   +     +      +T          +  +           
Sbjct: 161 YDRVFLALTPALAIITN--VEWDHPDVYPTPSEYTAAFAAFSRQVRDPRRLLVCADDPGA 218

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             L  +S A +Y  D +   +     +     L     G                     
Sbjct: 219 LALAGQSEARLYGIDEH---IATDPVSCRLAPLDWTASGVTGTATGQQFDLWYYDRRSFG 275

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                     +PGE  V NA  A       G D    +  L +      RFE+ G +  G
Sbjct: 276 RRLAATVTLAIPGEHNVRNATAALAAAALWGADLRTAVTALAEYRGSSRRFEWRG-DVGG 334

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAI 414
             +  DYAH    ++  L   R     R ++V+       + +        A   A + +
Sbjct: 335 ITVIDDYAHHPTEVQATLLAARQRYPDRRLIVYLQPHTFSRTRSLWDQWPAAFREAAVVL 394

Query: 415 VTDDNPRSE--DPEKIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGK 467
           V D  P  E  DP  +        I HGIP      +   A    + +    DV++  G 
Sbjct: 395 VGDIYPAREQGDPVALAQSLVDHLIAHGIPARYAGPS-ALAPSALLAVAQSGDVVLTLGA 453

Query: 468 G 468
           G
Sbjct: 454 G 454


>gi|291528773|emb|CBK94359.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale M104/1]
          Length = 459

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 86/273 (31%), Gaps = 10/273 (3%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+  +H+D+ +      ++        L   +  I    D   +E++      
Sbjct: 179 PRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEID-RYEEIVAGLPQK 237

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                       +                +      FD    +PG   V NAL A  L  
Sbjct: 238 IITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIALST 297

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +G+D+  +L  L+K      RF++ G    G  I  DYAH    +   L   +     R
Sbjct: 298 TLGLDTESILTGLDKFGGADRRFQYKG-KVNGVTIIDDYAHHPTEIRATLTAAQKYPHDR 356

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGI 436
           +++ F      R +        +   +AD+ ++ D     E        + I   ++   
Sbjct: 357 LVLCFQPHTYSRTKAFLNDFADVLS-MADVVVLADIYAAREQNTYGISSKDILDLLLEKG 415

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  +  E  +   E     D+L+  G G+
Sbjct: 416 VNAHYFPSFEEIEKFLSENCVNGDLLITMGAGN 448


>gi|291327122|ref|ZP_06127070.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rettgeri DSM 1131]
 gi|291311637|gb|EFE52090.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rettgeri DSM 1131]
          Length = 448

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 112/371 (30%), Gaps = 57/371 (15%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +       +F    ++       +  
Sbjct: 89  PERWVLAVAGTHGKTTTAGMLAWILEDCGYKPGFL-IGGVPGNFDVSAKIGESPFFVIEA 147

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D  +  +A       
Sbjct: 148 DEYDCAFFDKRSKFVHYSPKTLVLN-------------NLEFDHADIFENLEAIQ----- 189

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  PA        +   +K+    GC        G+    +     H+     
Sbjct: 190 KQFHHLVRIVPASGKIFTPDNDNHLKQVIGMGCWSEQELVGGEHGGWQAEKLSHDGSHFA 249

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  + +   +  +   G   + NAL+A      +G+        L+       R E  G 
Sbjct: 250 VYYQQEKVGEVTWSQVGNHNIQNALMAIAAAHHVGVPVKEACLALDSFINARRRLELRGV 309

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------ 403
            + G  +Y D+AH   ++   L+ +R+   G  RI+ V        +     MG      
Sbjct: 310 EN-GVSVYDDFAHHPTAILATLEALRSKVGGTSRILAVLEP-----RSNTMKMGINKNDI 363

Query: 404 KIALDLADIAI----------VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
             AL  AD             VTD   +   P +  A+I       I            I
Sbjct: 364 APALGRADEVFLFQPANIPWMVTDIAEKCVQPARWSADIEA-FTNMI------------I 410

Query: 454 EMLNKQDVLVV 464
           E     D ++V
Sbjct: 411 ETAQPGDHILV 421


>gi|148828296|ref|YP_001293049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
 gi|166224763|sp|A5UIR0|MURD_HAEIG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148719538|gb|ABR00666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
          Length = 437

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 121/394 (30%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R     +   +   +  ++
Sbjct: 161 SFQLET--TYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLR-----IHHNAKVGVLNNE 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                             +      ++  +        +   I            L G  
Sbjct: 214 DRLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMVKDEVILP-----CEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+ V   +    I    A    S  
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVHQANGIRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R        A
Sbjct: 329 AALAGL--YIEGKLHLLLGGDG-----KGADFSELAELINQPHIICYCFGRD------GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 376 QLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|91223607|ref|ZP_01258872.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           alginolyticus 12G01]
 gi|269966025|ref|ZP_06180117.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           alginolyticus 40B]
 gi|91191693|gb|EAS77957.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           alginolyticus 12G01]
 gi|269829421|gb|EEZ83663.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           alginolyticus 40B]
          Length = 420

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 102/369 (27%), Gaps = 25/369 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +         + + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRING----VDVV 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A    +   V     + S    +   L  +++      ++    +       A      
Sbjct: 102 DAKHCEAFDYVEKQRGDVSLSLFEFGTLAALRIFQVEKVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-----------IHLK 280
            +               DD       K       +    G                    
Sbjct: 162 DVSVITSLAIDHVDWLGDDINVIGFEKAGIYRSGKPAICGQPTPPATVAAHADDIGSEFF 221

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +V   ++ Q      +     F         +     A  L      +  +   ++    
Sbjct: 222 QVGIQYDYQLTDNGWKWSSGAFELEDLPIPSLPLQNAATALMALGASELQITDINIVNGL 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
                   +        I +D AH  +S E +++ ++    G+ I +V     D+D    
Sbjct: 282 NNARLAGRMQVLHHEPEIVLDVAHNPHSAEYLVERVKQQYLGKNIHIVVAMLHDKDIKAT 341

Query: 400 PI-MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLN 457
              +  +A      A +T   PR         E+   +P   +   N ++A  +A     
Sbjct: 342 IEALTPVATQWY-PASLT--GPR----AATADELCQYLPDGQVHFENPVDAFESARSHAK 394

Query: 458 KQDVLVVAG 466
             DV++V G
Sbjct: 395 AGDVILVVG 403


>gi|325479474|gb|EGC82570.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 464

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/405 (15%), Positives = 117/405 (28%), Gaps = 38/405 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGKSS 128
            +V + A    +       +    VV  TR  FL            +N +AV+G+ GKS+
Sbjct: 73  LVVYTDAILDDNEELIAAKSVGCPVV--TRGVFLGALMRNY-----KNSIAVSGSHGKST 125

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S + +I   S + +  +     +     + R+ +   +                    
Sbjct: 126 TTSMISKILMHSDVDATIL-LGGELDEMKGNVRVGSEDYLVTEACEYK------------ 172

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                     +           N+  DH+DY++      N                    
Sbjct: 173 --------GNIRYYYPQTLIVLNIDEDHLDYYKDLNDIVNTFKEYLSNQDANSLTITNLN 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           ++                              K   +          +G    F   + G
Sbjct: 225 EENNKLIFDSVKGRLITYAQENEDADYNAINIKFDEVGRPNFDLRFPDGSIEHFELGVIG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + NA+ +       GI    +  +L K   +  R + +G       I  DY H  + 
Sbjct: 285 RHNINNAMASIISTYENGIPVETIRTNLVKYTGLDRRMQIIGF-VDDATIMTDYGHHPSE 343

Query: 369 LEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE--DP 425
           +++ L  +   T G++I V+      R +           D AD  IVTD     E  DP
Sbjct: 344 IQVTLDALAEHTKGKLICVWQPHTYSRTKTLFNDFLN-CFDSADEVIVTDIYAAREKFDP 402

Query: 426 ----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               + +   +          G   +A     + + K D+++  G
Sbjct: 403 TIHSKDVVDALTKKGINAKYIGEFEDARDYIYKDIEKNDLVLTTG 447


>gi|322369877|ref|ZP_08044439.1| dihydropteroate synthase [Haladaptatus paucihalophilus DX253]
 gi|320550213|gb|EFW91865.1| dihydropteroate synthase [Haladaptatus paucihalophilus DX253]
          Length = 816

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 9/198 (4%)

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
           G         +    H +  +++S    + +   PL GE+Q  NA +AA L   +   + 
Sbjct: 218 GEDSDVRATYEGRTNHTEAAISLSGPDWNLETSIPLLGEYQAQNAGIAAVLARQVADVTD 277

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             L    +    PGRFE +GT      + +D AH   +   +   I       +  VFG 
Sbjct: 278 TELARGLRKGFWPGRFEVMGT---DPLVALDGAHNPGACAALADTIAEFDYDDLHFVFGA 334

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEII-HGIPGFIEKGNRIEA 448
             D+D      M   AL   D  + T  N  R+ED   I       G+       +   A
Sbjct: 335 MHDKDVEG---MAN-ALPTPDHVVATHANIDRAEDEAVIARVFEDRGVEHVERIRSVESA 390

Query: 449 IRTAIEMLNKQDVLVVAG 466
           + +A+   ++ D ++V G
Sbjct: 391 LESALAAADEDDFVLVVG 408


>gi|229513465|ref|ZP_04402929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
 gi|229521606|ref|ZP_04411024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229341200|gb|EEO06204.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229349342|gb|EEO14298.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
          Length = 451

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 113/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R   +         +      +K+ A  ++  V
Sbjct: 205 HHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEF---SGEQGEWQAEKITADGSQFHV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 262 LLKGE-RVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|161869635|ref|YP_001598802.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria meningitidis 053442]
 gi|161595188|gb|ABX72848.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria meningitidis 053442]
          Length = 406

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 123/393 (31%), Gaps = 37/393 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +    
Sbjct: 10  SEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAVN 69

Query: 163 TTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
             P                   I L        +     +  +     L+     RLD +
Sbjct: 70  AEPVSDDTIIASFERIEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGRLDAV 129

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G    +    +D+          ++   +  + +     I   +     ++  A  
Sbjct: 130 NAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRGGKPAICGQNPAPASLLSHAEA 188

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G ++L V  +    H  +    + + +   S          P P     Y    AA   
Sbjct: 189 IGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDGPARNRNALPFPALRGAYQLSNAACAL 247

Query: 323 IAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +   +  +   +        L   PGRF+ +          +D  H  ++   + +++
Sbjct: 248 TVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRRSL 304

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
             +    +   VF    D+D      + +I  D  D   +   D PR    E ++ ++  
Sbjct: 305 INLAFAQKRTAVFSMLSDKDIDG---VLEIVKDQFDEWYIAPLDVPRGMTLESLQNKLHE 361

Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I          EA R A     + D +VV G
Sbjct: 362 HSIENIQTFAAVREAYRAAASKAGENDRIVVFG 394


>gi|145220553|ref|YP_001131262.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189029018|sp|A4SH01|MURC_PROVI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145206717|gb|ABP37760.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 469

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 96/283 (33%), Gaps = 20/283 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        +L  +H+D + T +    A    F   +P     I  AD    + ++    
Sbjct: 173 LTPTIAVLNSLEAEHMDTYGTLEDLKKA-FVAFANKVPFYGRVICCADWPEIRGII--GS 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAG 320
                      +   +    +   + +   T+   G+ +      +PG   V NAL A  
Sbjct: 230 LNRLCTTFGIDEPADVSATDIVMANGRTTFTVQAFGEVYPGVSIAVPGRHNVQNALAAFA 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             + +G+D A ++  L     +  RF+    N RG  +  DYAH  + ++  LK  R   
Sbjct: 290 TGLELGLDPARLVHGLGCYSGMRRRFQIKYDNGRGLLVVDDYAHHPSEVKATLKAARNGW 349

Query: 381 SG-RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--------IRA 430
              RI+ VF      R +      G      AD+  ++   P  E  E         +  
Sbjct: 350 PSARIVAVFQPHLFSRTREFASEYGWALSR-ADMVYISSIYPSREKEEDFPGVDAGMVAG 408

Query: 431 EI-IHGIPGFIEKGNRIEAIRTAIEMLNK----QDVLVVAGKG 468
            +   G    +   +  E  R  +E  +       +L+  G G
Sbjct: 409 AVTKAGGKHVLYVSDSGELKRLLLEEASAAGPRGTILLFMGAG 451


>gi|332881752|ref|ZP_08449400.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680391|gb|EGJ53340.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 458

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 115/371 (30%), Gaps = 42/371 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L V GT GK++ +S    I  +S +          I+     N + +P   Y+    
Sbjct: 112 HKGLCVAGTHGKTTTSSMAAHILHQSHVDCNAF--LGGITKNYGTNYILSPKSDYVVIEA 169

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                                      +   A   T    DH+D + T++AY     R +
Sbjct: 170 DEFDRSFHW------------------LTPYASVITATDPDHLDIYGTKEAYL-ESFRKY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             L+      +++       +V +             +  + I +       +     IS
Sbjct: 211 TSLIRPGGFLVLHEGLEMQPDVQEGVTTYSYSRGHGDFHAENIRIGDGEIYFDF----IS 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
             G   D    +P    + N + A  L    G+    +   +     V  RF+F      
Sbjct: 267 PLGHIKDVQLGVPVSINIENGIAAMALAQISGVTPEEIKRGMASFRGVDRRFDF-RLKDD 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DI 412
                 DYAH    +   + +IR +  G+ I          +  R    + A  L+  D 
Sbjct: 326 KAVFLTDYAHHPAEIRQSVISIRELYRGKKIAAIFQPHLYTRT-RDFYKEFAESLSLLDE 384

Query: 413 AIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I+TD  P  E P        I   +   +   +    R E +   +   +  DV ++ G
Sbjct: 385 VILTDIYPARETPIPGVTSRLIYDRLAPTVKKCLC---RKEDVPEIVRQSDA-DVFILLG 440

Query: 467 KGH-ETV--HI 474
            G  E+    I
Sbjct: 441 AGDLESYAPQI 451


>gi|291530580|emb|CBK96165.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 734

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 138/469 (29%), Gaps = 53/469 (11%)

Query: 10  DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
              +L   L+       +  I   +   + I+ G  + A              A  +GA 
Sbjct: 295 TVGKLCEILNAELRNAADVPITSFAFGKQKIKPGCAYFAADKET------AVAAFEKGAS 348

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ +                P +VV N    LS  A  +        +AV  +  K + 
Sbjct: 349 VIITTQPIE----------KIPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKINP 398

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S ++Q+      +   I  T+  +S       +TP              +    V   +
Sbjct: 399 LSMIEQMLSNKMETVHSISVTNNYNSMLHAMFASTP--------------KTEAAVINVS 444

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             +G +  R+        +         +  +  +     +       + +    II  D
Sbjct: 445 CVNGGNVERVSQTANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINID 504

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +           + V  +        +   HNK    I     ++        +
Sbjct: 505 DKNLAGIFTI--PQDIITIGVDNRMADYFADNIELSHNKISFDIIHGADNYHIELYSDDK 562

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH----T 365
             VY AL    L   +GI    ++  +EK     G       N RG  +  D+ +    +
Sbjct: 563 HSVYQALATFALGEIMGIPPKQIIPAIEKYRPSTGLTTVR--NERGIYVISDFENEAVES 620

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDNPRS 422
             +    L  +      R I V    GD D+ +  I   +G I    +    V       
Sbjct: 621 VGTALKELCTMPLSPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVDITVC----YG 676

Query: 423 EDPEKIR--AEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQDVLVVAGKG 468
           E   ++   A++      F+ K N  +A+       L   D ++   KG
Sbjct: 677 ETAAELMKTADLKS---KFVIKLNTRQALTEFLKLNLRNNDAVLF--KG 720


>gi|254507374|ref|ZP_05119509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
 gi|219549630|gb|EED26620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
          Length = 453

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 103/355 (29%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEACGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P           + +      GC   +     +     +          
Sbjct: 202 -RQFHHLVRTVPGNGRIFAPKQDKALADVLERGCWSETESSGEQGDWQAEKVVNDGSHFK 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 +  +  + L G+  V NAL+A      +G+   L  + L K      R E    
Sbjct: 261 VFFQGNQVGEVRWSLVGDHNVDNALMAIAAARHVGVTPDLACDALGKFINTKRRLE-CKG 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   RI+ V         +G        +L  
Sbjct: 320 EIAGVTVYDDFAHHPTAIELTLGGLRNKVGPRRILAVLEPRSATMKRGVHKETLAASLRA 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      E +  +            +    +   +      D ++V
Sbjct: 380 ADSVFLYQPDSIDWSVEDVAQQ---CTQPAWTSKDVDALVEMIVAEAQTGDQILV 431


>gi|319424769|gb|ADV52843.1| UDP-N-acetylmuramate/alanine ligase [Shewanella putrefaciens 200]
          Length = 488

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 144/412 (34%), Gaps = 48/412 (11%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +S+A + ++           L V   R+   L+      +G      +A+ GT GK++  
Sbjct: 85  ISTAINAENPEIIAAKE---LRVPIVRRAEMLAELMRYRHG------VAIAGTHGKTTTT 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +  ++G     +     ++S   + RL T   +    A +  S     H+    S
Sbjct: 136 SLIASVYGQAGRDPTFV-IGGLLNSAGTNARLGTSRYL---IAEADESDASFLHLQPMVS 191

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH+D +        +    F   LP    A++  DD
Sbjct: 192 -----------------VVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDD 234

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGE 309
              +E+M R                           ++ + T+  +GK+  D L  LPG+
Sbjct: 235 PVVREIMPRIGRHLVTYGFSDDADV--QALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQ 292

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTS 366
             V NAL A  +     ID + +++ L +   +  RF+ +G  +       +  DY H  
Sbjct: 293 HNVLNALAAIAVATEDEIDDSALIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHP 352

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           + +   +K  R     + +V+        R +       ++     D  ++ D     E 
Sbjct: 353 SEVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEVLSQ-VDCLLLLDVYSAGEA 411

Query: 425 P------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I + G    I   +  +      ++L + D+L+  G G+
Sbjct: 412 PITGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLLTQGAGN 463


>gi|298241643|ref|ZP_06965450.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554697|gb|EFH88561.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 644

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 88/280 (31%), Gaps = 18/280 (6%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+      I  +    TN+  DH++ +   + Y  AK  +F            
Sbjct: 348 LELSSWQLEGLAPHSISPLVAVMTNIYPDHLNTYNGMEDYAEAKANIFRFQTEHGIAVFN 407

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           Y +       ++         +  G       L        +                PL
Sbjct: 408 YDNPWTRHFGLEAPGETWFTSVEHGGSFPRSALVDGTPTQVEPL---------AFAETPL 458

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + N L+A      +G+  +++ E + +   V  R E V        +    + + 
Sbjct: 459 KGRHNLENILLATTTARLLGVSESVIAETVRRFKGVSHRLEEVCVWHGVRIVNDSTSTSP 518

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + ++ L+           +V   GG+          +  +      I+   +   E   
Sbjct: 519 IAGQVALEAFEQ------PIVLVAGGNTKHLPLEQWPETIIKRCRDVILLPGSGTDELLP 572

Query: 427 KIRAEI-IHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLV 463
            +R EI   G+   +     +  +AI  A+ +    DVL+
Sbjct: 573 ALRQEIERQGVIDPVRGTFADFHQAIDAALALTRPGDVLL 612


>gi|216263492|ref|ZP_03435487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
 gi|215980336|gb|EEC21157.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
          Length = 449

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 123/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           +  GA+ ++       +     D                         +VV N       
Sbjct: 28  LKHGAKLVITDLKSEAELALSIDSLRDFDDQIRYVLGKHDVNDFKKADIVVKNPSVRPNN 87

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                A R           +   I+AVTGT GKS++ S + Q  ++        G     
Sbjct: 88  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQALKKKYPRVKLGGNIGVS 147

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 148 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPILSIITNV 186

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +      +V+    
Sbjct: 187 YNDHQNYYSNFDDYIIDKSKIFVNQTSGIVIIQDKAYYKYFSKFESK-----AKVILFSE 241

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                  + +   +  +          F           +   L+A  +   + ID   +
Sbjct: 242 FNPCNLDQDIFYSNKGEVYFNDNLIGSFFE----SQVVFMIPKLIAFFVAYYLNIDLNHM 297

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L+    +  R EFV             +   +S  + +K+++T  +   ++V G   
Sbjct: 298 FQILKNFKGIEHRLEFVKLVRNVMFYNDTASTIPDSTVLSVKSLKTNDNCINLIVGGTDK 357

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           + D      +  +      I I      +     KI   +      +    +   A+  A
Sbjct: 358 NLDFSSFSKIINLVKAW--ILI------KGSATVKIINVLEKSSIQYFVFDSLRGAVNYA 409

Query: 453 IEMLNKQDVLV 463
            E+ +  D+++
Sbjct: 410 FEISSPGDIVL 420


>gi|206890895|ref|YP_002249131.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742833|gb|ACI21890.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 456

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 19/280 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+ R+H+DY +  +    A +    ++       +          +     
Sbjct: 170 LSPAVSVITNIDREHLDYFKNLKRIKKAFLEFANKVPFYGVSVLCRECRHIRDLIPHLTR 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                           +++   +         +     F    P  G   V NAL    +
Sbjct: 230 RYVTYGFDEASDFCAKNIEYSSSKVLFDAFFRNKFLGRFAITVP--GNHNVLNALATIAV 287

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              + I    V E LE    +  RFEF G    G + Y DY H    ++ ++K    +  
Sbjct: 288 AKELSIPIEKVRESLENFTGISRRFEFKG-EKNGVKFYDDYGHHPTEIKAVIKTALWLKP 346

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIAL------DLADIAIVTDDNPRSEDP-----EKIRA 430
            R+ V+F     R    R +M +            D+  + D    SE P      +I  
Sbjct: 347 QRLCVIF--QPHRYTRTRDLMEQFIQVFKTTLRKNDVLFLMDIYAASEPPIEGVSAEILY 404

Query: 431 EIIHGIP-GFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKG 468
           E +  +    I   ++ + I+   +  L + D++   G G
Sbjct: 405 EKLKNVGVNVIFNPDKED-IKIDILRELKEGDLVFTIGAG 443


>gi|167753943|ref|ZP_02426070.1| hypothetical protein ALIPUT_02228 [Alistipes putredinis DSM 17216]
 gi|167658568|gb|EDS02698.1| hypothetical protein ALIPUT_02228 [Alistipes putredinis DSM 17216]
          Length = 430

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 115/391 (29%), Gaps = 39/391 (9%)

Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           +  G    N   + V GT+GK SV+  +  + Q++G  +     TS      ++  L   
Sbjct: 37  KHLGNPQRNYFTIHVAGTNGKGSVSHMLASVLQQAGYRTGLY--TSPHLRDFRERILVDG 94

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQ----------------------HRLDGIK 203
             I   K ++++         +  S   +                         RLD   
Sbjct: 95  EMIPKQKVVNFVDKHYDCMKELGLSFFEMSTALAFDYFDQSDVEVAVIETGLGGRLDATN 154

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           LI    + +    +D+                 ++ K  P +I         V  +A  A
Sbjct: 155 LIIPIVSVITNIGLDHMALLGDTLPKIAAEKAGIIKKSIPVVIGEKSDEYNHVFDQAATA 214

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               +                   K  +    + K F+    L G +QV+N L A  +  
Sbjct: 215 MMSKIVYAENDFACINHSTEGDFQKFSIQRHRDNKVFNLELDLTGNYQVHNILTAIAVID 274

Query: 324 AIGI------DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            +            + E +  +                     D  H ++ +  + + + 
Sbjct: 275 LLHQETPLTISLRALTEGMRTVASGTALQGRWQKLGDKPLTICDTGHNAHGIRYVAEQLA 334

Query: 378 TITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHG 435
                 +  V G   D+D     P+  K A       I T   N R+    K+  +    
Sbjct: 335 ATPHRDLYCVLGFVNDKDLSSVLPLFPKEA-----RYIFTQPGNERALPAGKLAEKAAAY 389

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       A+  A EM +++D++ + G
Sbjct: 390 GLRGEVADTVSGALARAREMASEEDMIFIGG 420


>gi|111115413|ref|YP_710031.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
 gi|122956339|sp|Q0SMS3|MURD_BORAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110890687|gb|ABH01855.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
          Length = 451

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 123/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           +  GA+ ++       +     D                         +VV N       
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLRDFDDQIRYVLGKHDVNDFKKADIVVKNPSVRPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                A R           +   I+AVTGT GKS++ S + Q  ++        G     
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQALKKKYPRVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGKSPLILEL-------------------SSWQLQS--LENFNPILSIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +      +V+    
Sbjct: 189 YNDHQNYYSNFDDYIIDKSKIFVNQTSGIVIIQDKAYYKYFSKFESK-----AKVILFSE 243

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                  + +   +  +          F           +   L+A  +   + ID   +
Sbjct: 244 FNPCNLDQDIFYSNKGEVYFNDNLIGSFFE----SQVVFMIPKLIAFFVAYYLNIDLNHM 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L+    +  R EFV             +   +S  + +K+++T  +   ++V G   
Sbjct: 300 FQILKNFKGIEHRLEFVKLVRNVMFYNDTASTIPDSTVLSVKSLKTNDNCINLIVGGTDK 359

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           + D      +  +      I I      +     KI   +      +    +   A+  A
Sbjct: 360 NLDFSSFSKIINLVKAW--ILI------KGSATVKIINVLEKSSIQYFVFDSLRGAVNYA 411

Query: 453 IEMLNKQDVLV 463
            E+ +  D+++
Sbjct: 412 FEISSPGDIVL 422


>gi|313682540|ref|YP_004060278.1| hypothetical protein Sulku_1416 [Sulfuricurvum kujiense DSM 16994]
 gi|313155400|gb|ADR34078.1| hypothetical protein Sulku_1416 [Sulfuricurvum kujiense DSM 16994]
          Length = 334

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 19/109 (17%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++++      L+   ++            V  D+  ++ G  FVA      D    I
Sbjct: 1   MRLENILALSKGSLLGDPAVS-------VFENVVFDASKVKRGSFFVAYSPE--D----I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           P+A+  GA  ++      + D      S    + VDN    L       
Sbjct: 48  PEALQNGAYGVMFDKPTQISD------SEIAWIKVDNIDNALKKLLRFY 90


>gi|219683260|ref|YP_002469643.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620910|gb|ACL29067.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis AD011]
          Length = 525

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 51/175 (29%), Gaps = 13/175 (7%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG     NA  A    + +G+D+               RF+  G       +  DYAH
Sbjct: 330 RIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFLGANRRFQIRG-TVSDITVVDDYAH 388

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +  +LK  R       + V        R Q         AL LAD  IVT   P  
Sbjct: 389 HPTEITALLKAARRRYPDSQLHVLFQPHLFSRTQFFAQEFAD-ALSLADDVIVTGIFPAR 447

Query: 423 ED--------PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E         P  I       G        +   A +         DV+   G G
Sbjct: 448 EKQSDFPQVTPNTIVDNAHGDGSYEIEAVDDMSLAAQMLAMRAQPGDVIFTVGAG 502


>gi|170681037|ref|YP_001746635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli SMS-3-5]
 gi|170518755|gb|ACB16933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli SMS-3-5]
          Length = 457

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 102/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F     L       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSACLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|170718781|ref|YP_001783964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 2336]
 gi|168826910|gb|ACA32281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           2336]
          Length = 436

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/397 (16%), Positives = 125/397 (31%), Gaps = 56/397 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV+S   S++           + VV +          R   K    I+A+TG++GKS
Sbjct: 67  ADLIVISPGLSVKTLEIQTALQAGVEVVGDI-----ELFCRYANKP---IIAITGSNGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ +  GL     G                   + L         Q      +
Sbjct: 119 TVTTLVSEMAKEDGLKVGIGGNIGIP-------------ALEL-------LQQDYDLYVL 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++E        A   
Sbjct: 159 ELSSFQLET--TYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQRAVINAE-- 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                  +V+    +    +     Q  +    +    +   +  + +   +      L 
Sbjct: 215 -------DVLTTTEDLKSPITFGESQADYWLKTENGKQYLMAKERLILPCDE----MKLV 263

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A+ L  A+ I    +   L K   +  RF+          I    A    
Sbjct: 264 GRHNYMNALAASALVQAVDISFTAIRTALRKFTGLAHRFQLAYQKDDVRWINDSKATNVG 323

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L  +    + ++ ++ G  G +      +   I            D         
Sbjct: 324 STVAALTGL--YVANKLHLLLGGDG-KSADFSELATLINQPHIYCYCFGQDG-------- 372

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              E+              +AI      L + D++++
Sbjct: 373 --KELAALSVQSQLFDTMEQAIEAIRPNLQQGDMVLL 407


>gi|284030818|ref|YP_003380749.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
 gi|283810111|gb|ADB31950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
          Length = 479

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 120/412 (29%), Gaps = 50/412 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            G E +V S             +   + V                  +    L VTGT+G
Sbjct: 77  AGVEVVVTSPGIPPHAPLLAAAAERDVPVWSEIELA----WRLRDPANAAPWLCVTGTNG 132

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  +   +G  +   G                     L    + +  +    +
Sbjct: 133 KTTTVQMLTAMLTAAGHRAVAAGNVG------------------LPLLEAVMDPEPYDVI 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +VE SS+ L  H    +   + +  NL  DH+D+H + +AY   K R+FE         +
Sbjct: 175 AVELSSYQL--HFTHSMSAHSAAVLNLAPDHVDWHGSLEAYAADKGRIFENCQVACVYNV 232

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             A      E             ++G  G  +       + ++  V              
Sbjct: 233 ADAATEKLVEQADVVEGCRAIGFTLGTPGLSMLGLVDEYLVDRAFVEQRATSALELATLA 292

Query: 306 LPGEFQVYN---ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                  +N   AL AA L  A G+ +  V + L        R   V   +    +    
Sbjct: 293 DITPPAPHNVANALAAAALARAFGVPATAVRDGLRGFRPDAHRIAHVAEVAAVNYVDDSK 352

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A   ++ +  L           +V    G  +      ++      L  + ++       
Sbjct: 353 ATNPHAAQASLLAYE------HVVWIAGGQAKGATFDELVTAARSRLRGVVLL------G 400

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEA---------IRTAIEMLNKQDVLVVA 465
           +D   I   +    P        +EA         +  A ++    D +++A
Sbjct: 401 QDKAVIAQALARHAPDVPVIT--VEATDTGAMETVVGEAAKLAQVGDTVLLA 450


>gi|17986860|ref|NP_539494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045063|ref|ZP_05447964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|260565338|ref|ZP_05835822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|265991490|ref|ZP_06104047.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|30316086|sp|Q8YI68|MURD_BRUME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|17982497|gb|AAL51758.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|260151406|gb|EEW86500.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|263002274|gb|EEZ14849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 467

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEL 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSLEEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|161502490|ref|YP_001569602.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863837|gb|ABX20460.1| hypothetical protein SARI_00534 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 422

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++T+   GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKTLPKRGRMLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A + AI+
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGN----VYDSVAQAWQAAID 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 AAQPEDTVLVCG 402


>gi|153215192|ref|ZP_01949873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|153825779|ref|ZP_01978446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
 gi|124114837|gb|EAY33657.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|149740502|gb|EDM54617.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
          Length = 451

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 113/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R   +         +      +K+ A  ++  V
Sbjct: 205 HHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEF---SGEQGEWQAEKITADGSQFHV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 262 LLKGE-RVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|78188037|ref|YP_378375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|122063240|sp|Q3ANV5|MURD_CHLCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78170236|gb|ABB27332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
          Length = 464

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 108/372 (29%), Gaps = 45/372 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRL 162
             AS         ++ +TGT GK++ ++ +  +C+  G                     L
Sbjct: 97  EVASCFCK---ARMVGITGTDGKTTTSTLIHTLCEADGKRHGYRSYSVGNSGIPFSSMVL 153

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                          + Q      +E SS+ L+  R           TN+  DH+D +  
Sbjct: 154 ---------------AMQPNDVAVIELSSYQLE--RSISFHPQVSLITNITPDHLDRYGQ 196

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAY-SKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
               +                 I   DD+              CR ++ G +        
Sbjct: 197 NMQRYAEAKYRIFMNQQAGDTFIYNQDDSMLQAAFGASQIAVPCRSVAFGLEPLTNVQLD 256

Query: 282 VCAIHNKQQVTISVEGK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
              +     + +  +           D        G+  + N L A  +  A+GI S ++
Sbjct: 257 KRRVLVNGNMVVVRQNDGALQPIVAVDEVLNRAFRGKHNLSNVLAAVAVGEALGIGSEVM 316

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     V  R E V T      I    A   N++   L+ +               G
Sbjct: 317 RQALTAFGGVEHRQELVATIDGVEWINDSKATNVNAMRQALEAVPAPM-------ILIAG 369

Query: 393 DRDQGKRPI-MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
            RD+G     +  +      + I T      E  EK+ +    G    I      EA+  
Sbjct: 370 GRDKGNNYATVSHLIERKVCLLIAT-----GESREKLAS-FFKGKVPVIAVPTIDEAVAI 423

Query: 452 AIEMLNKQDVLV 463
           A +     + ++
Sbjct: 424 AHQQAKAGESVL 435


>gi|78187951|ref|YP_375994.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
 gi|109892718|sp|Q3B130|MURC_PELLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78167853|gb|ABB24951.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 473

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 73/206 (35%), Gaps = 17/206 (8%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              +   H +   TI+  G D+  +   +PG   + NAL A    + +GI+   ++  L 
Sbjct: 247 AGDIVMDHGRATFTITAFGTDYPGVCLNVPGRHNILNALSAFATGLELGIEPERLIAGLG 306

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRD 395
           +   +  RF+    +SRG  +  DYAH  + ++  +K  R+     R+I VF      R 
Sbjct: 307 RYSGMRRRFQVKFRDSRGLMVIDDYAHHPSEVKATVKAARSGWPDARVIAVFQPHLFSRT 366

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSE--------DPEKIRAEI-IHGIPGFIEKGNRI 446
                  G      AD   V    P  E        D   +   +   G        +R 
Sbjct: 367 LEFADEYGWALSR-ADGVYVAAVYPSREKQEDFPGVDGALVAEAVRRAGGRQVAFVPDRD 425

Query: 447 EAIRTAIEM-LNK---QDVLVVAGKG 468
           E +   +           +L+  G G
Sbjct: 426 ELLAAVLNEGAEPAPGGTILLFMGAG 451


>gi|56416380|ref|YP_153454.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma marginale str. St.
           Maries]
 gi|56387612|gb|AAV86199.1| UDP-N-acetylmuramate-alanine ligase [Anaplasma marginale str. St.
           Maries]
          Length = 278

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 47/140 (33%), Gaps = 13/140 (9%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQ 396
              V  RFE +  N  G     DYAH    +E      + + TSGR+I +       R Q
Sbjct: 114 FMGVGRRFEIIA-NVGGVTFVDDYAHHPTEIEASRNAAKLSTTSGRVIGILQPHRFTRVQ 172

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAI 449
                         D  I+TD  P  E+         I  EI   G    +      +AI
Sbjct: 173 HFFKDFTSAISKF-DYLILTDVYPAGEEVISGCESLDIVREIKSRGFDQVVHASTP-DAI 230

Query: 450 RTAIEM-LNKQDVLVVAGKG 468
              +       DV++  G G
Sbjct: 231 TDIVASVAQPGDVVIAMGAG 250


>gi|301169876|emb|CBW29480.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae 10810]
          Length = 437

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 122/394 (30%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLET--TYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIY----HNAEVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +    +                          +  K +V +  E              
Sbjct: 215 KLTFGEGENQAKQTVSFAENSADYWLKTENGKQYLMAKDEVILPCEEVTLVGRHNY---- 270

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A+GI+   +   L     +  RF+     +    I    A    S  
Sbjct: 271 --MNILAATALAQAVGINLDAIRTALCHFKGLDHRFQLAHQANGVRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R        A
Sbjct: 329 AALAGL--YVEGKLHLLLGGDG-----KGADFSELAELINQPQIICYCFGRD------GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI     +L   D++++
Sbjct: 376 QLAKLSSQSHLFETMEQAIAFLRPILQSGDMVLL 409


>gi|330501925|ref|YP_004378794.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
 gi|328916211|gb|AEB57042.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
          Length = 480

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 118/387 (30%), Gaps = 46/387 (11%)

Query: 44  WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103
            IF+        GH     A    A+ +VVSSA +  +          I VV    + L+
Sbjct: 65  TIFI--------GHR-AENAEQ--ADVLVVSSAVNTSNPEVATALERRIPVVPRA-EMLA 112

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
                 +G      +AV GT GK++  S +  +    GL                     
Sbjct: 113 ELMRYRHG------IAVAGTHGKTTTTSLLASVFAAGGLDP----TFVIGGRLNAAGTNA 162

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                    A +  S     H+    S                   TN+  DH+  +   
Sbjct: 163 QLGSSRFLIAEADESDASFLHLQPMVS-----------------VVTNIDADHMSTYGGD 205

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                     F   LP    A++  DD   +E++ +                   +    
Sbjct: 206 FNKLKKTFIEFLHNLPFYGLAVLCVDDPVVRELLPQVGRPTV-TYGFSEDADVRAINVRQ 264

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                    +  + +  D    +PG   V NAL    +    GID A ++  L     V 
Sbjct: 265 EGMRTYFTVLRPDCEPLDVSVNMPGNHNVLNALATTAIATDEGIDDAAIVSGLSGFQGVG 324

Query: 344 GRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR- 399
            RF+  G          +  DY H    +  ++K +R     R +V+        + +  
Sbjct: 325 RRFQVYGELPVDGGSVMLVDDYGHHPREVAAVIKAVRGGWPERRLVMVYQPHRYSRTRDL 384

Query: 400 -PIMGKIALDLADIAIVTDDNPRSEDP 425
                ++  + A++ ++ +  P  E+P
Sbjct: 385 YDDFVQVLGE-ANVLLLVEVYPAGEEP 410


>gi|317056018|ref|YP_004104485.1| FolC bifunctional protein [Ruminococcus albus 7]
 gi|315448287|gb|ADU21851.1| FolC bifunctional protein [Ruminococcus albus 7]
          Length = 423

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
             GRFE +        +  D AH  + +      I    + +  ++ G   D++ G    
Sbjct: 286 WHGRFEILRR---DPYVIFDGAHNPDGIRFAADTISRFFTEKAAILIGVMADKEYGLYAD 342

Query: 402 MGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           M        D A  V  DNPR+    K+                  + +  A     ++D
Sbjct: 343 M---LGRYIDKAFTVRPDNPRALHSSKLAEVFTANGIKAESFEVLSDGVEAAYSYAKEKD 399

Query: 461 VLVVA 465
           + ++A
Sbjct: 400 IPLIA 404


>gi|282882890|ref|ZP_06291495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297301|gb|EFA89792.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
          Length = 438

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 101/284 (35%), Gaps = 18/284 (6%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +EASS  L+       K      T + +DH+D+H+T+  Y NAK ++F      
Sbjct: 146 NNDFIVIEASSFQLED--THEFKPKVALLTYVTKDHLDWHKTEDNYRNAKYKIFANQDKD 203

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I    D  S++ +K   +      +     +  +L     I     +   +     
Sbjct: 204 DFSII--NYDDRSRDDLKDLKSNIYYFSTEKKDIRGCYLDDGKIIFKDGDIREEIIDIKD 261

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V N + A  +     + + ++ + ++    V  R EFV   +       
Sbjct: 262 IK---IPGIHNVKNVMGAIIIAKIFNVSNDIIKQSIKIFSGVEHRIEFVKKVNGVSFYND 318

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                 +S  + +K +         ++ G G D+      +M  IA +L  + +     P
Sbjct: 319 SKGTNPDSTLVAVKAMT-----NKTILIGGGYDKGSDFNSLMENIAPNLRSLIVFGQTGP 373

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 K+  E  +         +   A++  + +  K D +++
Sbjct: 374 ------KMAKEAKNYGIEVFIVKDLPAAVKLGVSLAKKGDSILL 411


>gi|330888575|gb|EGH21236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 448

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 120/356 (33%), Gaps = 38/356 (10%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    +A+TG++ KS+V + V ++   +G      G   T               +
Sbjct: 103 FARYAKAPGIAITGSNAKSTVTTLVGEMAVAAGKRVAVGGNLGTP-------------AL 149

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +    AY  
Sbjct: 150 DLLSDDVEL-------YVMELSSFQLET--TDQLNAEVATVLNISEDHMDRYSGLPAYHL 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          ++   DA S+ ++      G    + G      H   +   + +
Sbjct: 201 AKHRIFRGARQ----VVVNRQDALSRPLIGE----GLPCWTFGLNKPDFHGFGLREENGE 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    E         + G     NAL A  L  A+G+    +L  L +   +    ++
Sbjct: 253 KYLAFQFENLMPVRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHPCQW 312

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +  +          A    +    ++ + +   G+++++ G  G +      +   +A +
Sbjct: 313 LREHDGVHYYNDSKATNVGAALAAIEGLGSDIDGKLVLIAGGDG-KGADFSALRAPVA-E 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               A++        D E I   +   +   +       A+  +  +  + D +++
Sbjct: 371 HCRAAVL-----LGRDAELIAQALGDAVT-LVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|288801607|ref|ZP_06407049.1| UDP-N-acetylmuramate--alanine ligase [Prevotella melaninogenica
           D18]
 gi|288335649|gb|EFC74082.1| UDP-N-acetylmuramate--alanine ligase [Prevotella melaninogenica
           D18]
          Length = 458

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 117/367 (31%), Gaps = 47/367 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              L   GT GK++ +S    +  +S    ++F  G +    +    +  +    I   +
Sbjct: 112 HKGLCFAGTHGKTTTSSMCAHLMHQSHLDCNAFLGGISKNYGTNYILSDHSDFVVIEADE 171

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                                        ++      T+   DH+D + T++AY  +   
Sbjct: 172 FDRSFHW----------------------LRPWMSVITSTDPDHLDIYGTKEAYLESFRH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             E +    +  I    +      MK     G R+          H + +   +      
Sbjct: 210 YTELIQKGGALIIRKGLE------MKPNVQEGVRIYEYSRDEGDFHAENIRIANGTITFD 263

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                ++  D     P    + N + A  +    G  +  +   ++    V  RF+F   
Sbjct: 264 FFSPIENIKDIELGQPIPINIENGISAMAMAQLNGCTAEELRNGMKTYGGVDRRFDF-KI 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
                    DYAH    +    K+++ + + + +          R +       + AL  
Sbjct: 323 KDNRHVFLSDYAHHPKEILQSAKSLKELYADKKVTAIFQPHLYTRTRDFYKEFAE-ALSH 381

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVL 462
            D  ++T+  P  E+P      E I   +   +    I+K + ++ ++         DVL
Sbjct: 382 FDEVVLTEIYPAREEPIPGVTSELIYDNLSPNVKKQMIKKDDVLDFVK-----SRDFDVL 436

Query: 463 VVAGKGH 469
           VV G G+
Sbjct: 437 VVLGAGN 443


>gi|262170518|ref|ZP_06038196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
 gi|261891594|gb|EEY37580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
          Length = 451

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 104/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S V  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P           E +      GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDEALADVFKRGCWSETEFSGEQGEWQAEKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCAQPAQVSANMDEFVAMIAKEAKAGDQILV 431


>gi|16765692|ref|NP_461307.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|161612899|ref|YP_001586864.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|167993054|ref|ZP_02574149.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168229741|ref|ZP_02654799.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468860|ref|ZP_03074844.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204928958|ref|ZP_03220101.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|16420908|gb|AAL21266.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161362263|gb|ABX66031.1| hypothetical protein SPAB_00605 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455224|gb|EDX44063.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204321502|gb|EDZ06701.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205328778|gb|EDZ15542.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205335862|gb|EDZ22626.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|261247571|emb|CBG25398.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994467|gb|ACY89352.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301158923|emb|CBW18436.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913356|dbj|BAJ37330.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222933|gb|EFX48004.1| Dihydrofolate synthase / Folylpolyglutamate synthase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130698|gb|ADX18128.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989298|gb|AEF08281.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 422

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 116/391 (29%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPA 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V            V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SRLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +  +A + AI+    +D ++V G
Sbjct: 376 N----VYDSVAQAWQAAIDAAQPEDTVLVCG 402


>gi|15642940|ref|NP_227981.1| folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga
           maritima MSB8]
 gi|4980660|gb|AAD35259.1|AE001701_12 folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga
           maritima MSB8]
          Length = 430

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 116/375 (30%), Gaps = 36/375 (9%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-------------------- 144
            +           + + GT+GK SVA+ V  I    G                       
Sbjct: 30  LSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEE 89

Query: 145 --------FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                           I +      + +PS   +  A++        +V +     GL  
Sbjct: 90  YISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMA-FLYFAEKNVDIAVLEVGLG- 147

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RLD   ++    + +     D+ +T              ++ +  P +       + +V
Sbjct: 148 GRLDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKV 207

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M+         + V  +   + +K +    N+         +D       P + +     
Sbjct: 208 MEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVA 267

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +       + +    + E L+    + GRFE +     G    +D AH  +  E +++++
Sbjct: 268 LKTLEATGLPLSEKAIREGLKNAKNL-GRFEIL--EKNGKMYILDGAHNPHGAESLVRSL 324

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHG 435
           +   +G  + +    G  D   R  + +    + +  IVT   +PR +D   +       
Sbjct: 325 KLYFNGEPLSLVI--GILDDKNREDILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKKF 382

Query: 436 IPGFIEKGNRIEAIR 450
                   + +EAI 
Sbjct: 383 FKNVEVIEDPLEAIE 397


>gi|39654293|pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
           From Thermotoga Maritima At 2.10 A Resolution
          Length = 442

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 116/375 (30%), Gaps = 36/375 (9%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS-------------------- 144
            +           + + GT+GK SVA+ V  I    G                       
Sbjct: 42  LSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEE 101

Query: 145 --------FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
                           I +      + +PS   +  A++        +V +     GL  
Sbjct: 102 YISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMA-FLYFAEKNVDIAVLEVGLG- 159

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RLD   ++    + +     D+ +T              ++ +  P +       + +V
Sbjct: 160 GRLDATNVVFPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKV 219

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           M+         + V  +   + +K +    N+         +D       P + +     
Sbjct: 220 MEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVA 279

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +       + +    + E L+    + GRFE +     G    +D AH  +  E +++++
Sbjct: 280 LKTLEATGLPLSEKAIREGLKNAKNL-GRFEIL--EKNGKMYILDGAHNPHGAESLVRSL 336

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHG 435
           +   +G  + +    G  D   R  + +    + +  IVT   +PR +D   +       
Sbjct: 337 KLYFNGEPLSLVI--GILDDKNREDILRKYTGIFERVIVTRVPSPRMKDMNSLVDMAKKF 394

Query: 436 IPGFIEKGNRIEAIR 450
                   + +EAI 
Sbjct: 395 FKNVEVIEDPLEAIE 409


>gi|294852756|ref|ZP_06793429.1| UDP-N-acetylmuramate-alanine ligase [Brucella sp. NVSL 07-0026]
 gi|294821345|gb|EFG38344.1| UDP-N-acetylmuramate-alanine ligase [Brucella sp. NVSL 07-0026]
          Length = 471

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 94/285 (32%), Gaps = 21/285 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  R F E +P     ++  D    + ++ R  
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVR-AAFRQFVENVPFYGFGVMCLDHPEVQALVSRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKV-----CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +          Q +   + +             +       +  D   P+PG   V NA 
Sbjct: 232 DRRIITYGSNPQAEVRFVNQRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGLHNVSNAT 291

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI S  +   L     V  RF   G +  G  I+ DY H    +  +LK  
Sbjct: 292 AAIAVAHELGISSDDIRRGLGSFGGVKRRFTHTG-SWNGVEIFDDYGHHPVEIRAVLKAA 350

Query: 377 RT---ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------ 425
           R       GR++ +      R      +  + A     AD  IV       E+P      
Sbjct: 351 REATSQAGGRVVAIV--QPHRYTRLASLFDEFAACFNDADTVIVAPVYTAGEEPIEGVNS 408

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           E++ + I              EA+      +    D +V  G G+
Sbjct: 409 EELVSRIKTAGHRDARYATGPEALTPLVASIAQAGDFVVCLGAGN 453


>gi|226329708|ref|ZP_03805226.1| hypothetical protein PROPEN_03620 [Proteus penneri ATCC 35198]
 gi|225202894|gb|EEG85248.1| hypothetical protein PROPEN_03620 [Proteus penneri ATCC 35198]
          Length = 459

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 111/376 (29%), Gaps = 49/376 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ A  +  + +  G    F IG        +     +    I   
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWVLEDCGYKPGFLIGGVPGNFQVSAQLGESPFFVIEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D          A +
Sbjct: 161 EYDSAFFDKRSKFV---------------HYSPRTLILNNLEFDHADIFDDL-----AAI 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     L +  P         +   +K+    GC               K  +  +    
Sbjct: 201 QKQFHHLVRIVPGSGKIIMPDNDMNLKQTIGMGCWSEQEFTGETGDWQAKKISNDSSHFA 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 +  +  + L GE  + N L+A      +G+  A   E L K      R E  G 
Sbjct: 261 VFHKGEQVGEVCWGLSGEHNMQNGLMAIVAAHHVGVLPADACEALNKFINARRRLELRGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------ 403
            ++   +Y D+AH   ++   L+ +R+   G  RII V        +     MG      
Sbjct: 321 VNQ-VSVYDDFAHHPTAILATLEALRSKVGGTARIIAVLEP-----RSNTMKMGISKDDI 374

Query: 404 KIALDLADIAIVTDDNPRSEDP--EKIRAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQD 460
             AL  AD   +       + P  + + ++I            +    +    +     D
Sbjct: 375 APALGRADEVFL------FQPPNIQWLVSDIAEHCVQPARWSTDLDTLVDMIAKEAQAGD 428

Query: 461 VLVVAGKG-----HET 471
            +++   G     HE 
Sbjct: 429 HILIMSNGGFGGIHEK 444


>gi|300935900|ref|ZP_07150856.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 21-1]
 gi|300458919|gb|EFK22412.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 21-1]
          Length = 445

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 105/359 (29%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL   +   +   
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESNFFVIEAD 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 149 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++   +   +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQP---AHIPWQVAEVVEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|283786910|ref|YP_003366775.1| murein peptide ligase [Citrobacter rodentium ICC168]
 gi|282950364|emb|CBG90012.1| murein peptide ligase [Citrobacter rodentium ICC168]
          Length = 457

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 99/359 (27%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMAAWILEACGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A       L
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+           A         
Sbjct: 208 VRIVPGQGRIIYPENDINLKQTLAMGCWSEQELVGEQGHWQAKKLNADASAWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGEVKWSLVGEHNMHNGLMAIAAARHVGVQPADAAAALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVYLLQPPH---IPWQVAEVADACVQPAHWSGDVDALAEMVVKTAQPGDHILV 432


>gi|261855072|ref|YP_003262355.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
 gi|261835541|gb|ACX95308.1| UDP-N-acetylmuramate/alanine ligase [Halothiobacillus neapolitanus
           c2]
          Length = 491

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/368 (18%), Positives = 118/368 (32%), Gaps = 41/368 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A+ IV+S+A    +          + +V   R+   L+       G      LAV GT G
Sbjct: 85  ADVIVISTAVKADNPELAAAQAKRLPIV---RRAEMLAELMRFRIG------LAVAGTHG 135

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I   +G     +     + S + + RL     +      S  S       
Sbjct: 136 KTTTTSLLAAILAEAGWDPTYV-IGGKLLSSSSNARLGRGEYLVAEADESDASFLH---- 190

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++      TN+  DH++ +             F   LP    A+
Sbjct: 191 ----------------LQPHVAIVTNIDADHLETYDGNFERLVDHFIEFLHNLPFYGLAV 234

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
           + ADD  +  +  R             Q   +    V +     +  +++  +  FD   
Sbjct: 235 LCADDPVAAGITARVGRQVLTYGI--DQPADVRATDVYSDGFGSRFVVNLPNQTQFDCRL 292

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG---TNSRGGRIYVD 361
            +PG   V NAL A  +   +G+  A + + L     V  R E  G      +   +  D
Sbjct: 293 AMPGRHNVLNALAAITVAQDLGVPVAAIQQALTSFQGVGRRLERRGALAIKGKKLPLIDD 352

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDN 419
           Y H    +E  L+ +R       +VV        R +       ++     D  I+ D  
Sbjct: 353 YGHHPREVEATLQAVRAAWPDVRLVVIFQPHRFSRTRDLFEDFVRVLST-VDHLILLDVY 411

Query: 420 PRSEDPEK 427
              E P  
Sbjct: 412 AAGEAPIA 419


>gi|116071267|ref|ZP_01468536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
 gi|116066672|gb|EAU72429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
          Length = 462

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 111/352 (31%), Gaps = 30/352 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                     +    + +TGT+GK++V   +  + +++GL +   G              
Sbjct: 98  GEIELAWDALNDIPWVGITGTNGKTTVTHLLSHVLEQAGLRAPMGGNMGV---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   +A  +          + +E SS+ ++      +    G +T L  DH++ H T
Sbjct: 148 ---SAAEMALKIKTGDLLRPDWLVMELSSYQIEAGPT--LAPSIGIWTTLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            +    A   +   LL + S AI   DDA          +      +            +
Sbjct: 203 LE----AYRAIKRGLLQRSSLAIFNGDDADLNAHRSSLKSGIWVQTATPCPDDQPADFWI 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 Q                +PG     N L+     I IG+++  + +       V
Sbjct: 259 DDAGTIQARESGAMFP--ADALAMPGAHNRQNQLLVTAAAIQIGLNAEQIAQGFRSFPGV 316

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G+ +         A   ++  + L+ +        +VV   G  +       +
Sbjct: 317 PHRLERLGSTASADVFNDSKATNYDAAAVGLQAMAG-----TVVVLAGGQTKRGDATGWL 371

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            ++      + +       +E+ + +  +            +   A+  A++
Sbjct: 372 TELKSKACAVVLF---GAGAEELDALIRQ-SDYQGQVHRCNDLKAAVAIAVQ 419


>gi|119358487|ref|YP_913131.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
 gi|158512610|sp|A1BJY0|MURD_CHLPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119355836|gb|ABL66707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 464

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 116/370 (31%), Gaps = 42/370 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI-GPTSTISSFAQDNRL 162
             A          I+ +TGT GK++ A+ V +I +  G++          I        L
Sbjct: 97  EVAYWFCK---ARIIGITGTDGKTTTATLVHRIFETDGMTHRYRAFSVGNIGQPFSSRVL 153

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T                +      +E SS+ L+       +      TN+  DH+D ++ 
Sbjct: 154 T---------------MRPEDVAVIELSSYQLE--GCCTFRPDVSVITNITPDHLDRYEG 196

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           +   +            KE   +   DD    +            +     G        
Sbjct: 197 ELHNYAQTKYRIYAHQGKEDTLVYNDDDPLLHDHFASNRETLPCRIVPFGIGCKPEHAGF 256

Query: 283 CAIHNKQQVTISVEGK---------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
            A        I  +           +        G   + NAL A     A+GI +  + 
Sbjct: 257 AAAVRFCDHRIVFDAGAKSENIIEAEDFLKRSFRGRHNIANALAAVAAARALGIGNEAIR 316

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             L+    V  R EFV T      I    A   N+L   L+ +     GR++++   G D
Sbjct: 317 SALQGFSGVEHRQEFVRTLDGSDWINDSKATNINALSQALETV----PGRMVLI-AGGRD 371

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +    R I G +   +A +  +       E  EK+ A    G+       +  EA+  A 
Sbjct: 372 KGSDYREIAGIVRKKVAALVAI------GEAREKLCAA-YGGMVDVRSANSLEEAVSLAR 424

Query: 454 EMLNKQDVLV 463
            ++     ++
Sbjct: 425 ALVEPGQTVL 434


>gi|254994608|ref|ZP_05276798.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Mississippi]
          Length = 474

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 129/419 (30%), Gaps = 56/419 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTG 122
           Q A+ +V S+A    +    + I +   +L   +   K L               + V+G
Sbjct: 68  QNADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKALGA----------GRTIVVSG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  I + +G+             +  + ++                    
Sbjct: 118 SHGKTSTTGMIASIMEHAGMDPTVF-IGGIAFHYGNNYKMGAGE---------------W 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V  + S  G        +       TNL  +H D +   +A           +    +
Sbjct: 162 AVVEGDESDAGF-----TELPCEIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGA 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +               +   C  ++ G +G  +       + +     I     +   
Sbjct: 217 SVMPSRLS------FTLGNGTKCSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEIC 270

Query: 303 LF---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   V NAL AA +   IG+    +   LE    V  RFE +  N  G    
Sbjct: 271 CGVRLPVPGRHNVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEIIA-NVGGVTFV 329

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
            DYAH    +E      + + TSGR+I +       R Q              D  I+TD
Sbjct: 330 DDYAHHPTEIEASRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKF-DYLILTD 388

Query: 418 DNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             P  E+         I  EI   G    +      +AI   +       DV++  G G
Sbjct: 389 VYPAGEEVISGCESLDIVREIKSRGFDQVVHASTP-DAITDIVASVAQPGDVVIAMGAG 446


>gi|229192668|ref|ZP_04319627.1| Folyl-polyglutamate synthetase [Bacillus cereus ATCC 10876]
 gi|228590758|gb|EEK48618.1| Folyl-polyglutamate synthetase [Bacillus cereus ATCC 10876]
          Length = 433

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/387 (13%), Positives = 103/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++           V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKFNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +            +           +   + +         G   +    V      
Sbjct: 221 LYELGKHFTALHKQSNEDGEQFDFTCPFSAFEDLQISMKGIHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +    +     GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEDEIRTGLREAYWIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +E + + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVERIAENDVFIITG 417


>gi|28897088|ref|NP_796693.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363959|ref|ZP_05776698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260896370|ref|ZP_05904866.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|28805297|dbj|BAC58577.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085196|gb|EFO34891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308112565|gb|EFO50105.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 452

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 112/355 (31%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R      +      +       K+    +K +V
Sbjct: 205 HHLVRTVPGNGLILAPKQDQALTDVLERGCWTEKQF---SGEDGDWQAHKLVLDGSKFEV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 ALQGE-KVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 EQ-GITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + I  +            +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQCKQ---PAFVDADMDNFVAKIVERAQPGDQILV 431


>gi|15641016|ref|NP_230647.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121587337|ref|ZP_01677108.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           2740-80]
 gi|153819839|ref|ZP_01972506.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           NCTC 8457]
 gi|153829527|ref|ZP_01982194.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           623-39]
 gi|227081175|ref|YP_002809726.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           M66-2]
 gi|229505400|ref|ZP_04394910.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           BX 330286]
 gi|229510930|ref|ZP_04400409.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           B33]
 gi|229518051|ref|ZP_04407495.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           RC9]
 gi|229529905|ref|ZP_04419295.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           12129(1)]
 gi|229608419|ref|YP_002879067.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           MJ-1236]
 gi|254226231|ref|ZP_04919825.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           V51]
 gi|254291875|ref|ZP_04962658.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           AM-19226]
 gi|254848131|ref|ZP_05237481.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MO10]
 gi|255744783|ref|ZP_05418734.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholera
           CIRS 101]
 gi|262151272|ref|ZP_06028408.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           INDRE 91/1]
 gi|298498885|ref|ZP_07008692.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MAK 757]
 gi|9655464|gb|AAF94162.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|121548420|gb|EAX58480.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           2740-80]
 gi|125621267|gb|EAZ49607.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           V51]
 gi|126509620|gb|EAZ72214.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           NCTC 8457]
 gi|148874987|gb|EDL73122.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           623-39]
 gi|150422235|gb|EDN14199.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           AM-19226]
 gi|227009063|gb|ACP05275.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           M66-2]
 gi|229333679|gb|EEN99165.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           12129(1)]
 gi|229344766|gb|EEO09740.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           RC9]
 gi|229350895|gb|EEO15836.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           B33]
 gi|229357623|gb|EEO22540.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           BX 330286]
 gi|229371074|gb|ACQ61497.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           MJ-1236]
 gi|254843836|gb|EET22250.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MO10]
 gi|255737814|gb|EET93208.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholera
           CIRS 101]
 gi|262030963|gb|EEY49591.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           INDRE 91/1]
 gi|297543218|gb|EFH79268.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MAK 757]
 gi|327483719|gb|AEA78126.1| Dihydrofolate synthase [Vibrio cholerae LMA3894-4]
          Length = 421

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 104/365 (28%), Gaps = 16/365 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +           + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINGQDLADEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    +S+     G    L       + ++       GR             
Sbjct: 106 TQAFAHIEQERGDISLSLFEFGTLAALYLFEQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +         +   +   F         +     A  L        A+   ++       
Sbjct: 226 QFSYEKTSATTWNWRSGRFELTDLPIPSLPLPNAATALMALGCSGLAISDINIVDGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   S    I +D AH  +S   +++ +      R I +VFG   D+D      +
Sbjct: 286 QLAGRMQVISHQPTIVLDVAHNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD------I 339

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
               ++L+           S       A++   +P    +  N + A   A+     QDV
Sbjct: 340 ASTVVELSPAVTHWYPASLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDV 399

Query: 462 LVVAG 466
           +VVAG
Sbjct: 400 IVVAG 404


>gi|328675940|gb|AEB28615.1| Cyanophycin synthase II [Francisella cf. novicida 3523]
          Length = 561

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 119/377 (31%), Gaps = 27/377 (7%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
               +    + VTGT+GK++       IC+ +G      G TST      D  +      
Sbjct: 166 WQDIYDIPAVIVTGTNGKTTTIRLTDYICRVAGK---LTGYTSTDWVKVNDELIDEGDYS 222

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                   L+++ V    +E++  GL +  L    + A + TN+  DH+     +     
Sbjct: 223 GPTGHQFVLTNKKVEVALLESARGGLLKRGLIETYVNAAAVTNVSADHLGEDGIETVAEL 282

Query: 229 AKMRLFEELLPKESPAIIYADDAYSK--EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
           A+ +        +    +   D         K +        +        +L K     
Sbjct: 283 AEAKSIVFRALGQGSHGVINLDNSYMKERFDKLSCAKIVVTQNPQQHDMEYYLSKADYAC 342

Query: 287 NKQQVTISV----------EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             +                   +         +  + NA++A  L   +GI   ++ + L
Sbjct: 343 IVEDGNFVWVEANSKKVILPVVEAPLTVRGFAKHNIENAMIAIALSFKLGISFDVIEKAL 402

Query: 337 EKLHVVP--GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                 P   R              +DYAH    +E +L  ++     G+  ++ G  GD
Sbjct: 403 RSYSNDPKVNRGRANVFEWDNKVAVLDYAHNEAGIEALLNMVKAYDKGGKKYLMIGTTGD 462

Query: 394 RDQGKRPIMGKIALDLADIAIV--TDDNPRS----EDPEKIRAEIIH---GIPGFIEKGN 444
           R      I   +     D  ++  T+   R     E P  IR ++      I        
Sbjct: 463 RKYLISGINDIVLKHNLDFIVIKETEKYLRGAKPLELPLLIRKDLADKGYDISNTYISHG 522

Query: 445 RIEAIRTAIEMLNKQDV 461
            I+ ++  +E L   D+
Sbjct: 523 EIDGVKFLVEKLESNDM 539


>gi|194014783|ref|ZP_03053400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           ATCC 7061]
 gi|194013809|gb|EDW23374.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           ATCC 7061]
          Length = 446

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 109/365 (29%), Gaps = 50/365 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  L        + +TG++GK++  + + ++ ++    +   G   T++S    N   
Sbjct: 100 ELAYHLTSSP---FIGITGSNGKTTTTTLIYEMLKQDSQKTLVAGNIGTVASEVAANAAG 156

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                +  E SS  L        +       N+   H+DYH T+
Sbjct: 157 ------------------DEWIVTELSSFQL--MGTVEFRPKISLILNIFDAHLDYHHTR 196

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
             Y  AK ++F      +   I    D  S   +     A     SV    +     +  
Sbjct: 197 DEYEKAKQKVFAHQQEDDIAVI--NLDDPSVVKLAEGSKAKKVFFSVKEPVEHGAFIQHG 254

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           AI+   +  I V+                 N L A  +    G  +  +   L     V 
Sbjct: 255 AIYYMNEHIIDVKDVVLPGEHNQ------ENILAAICVVKNAGCSNEAITRVLTTFGGVK 308

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RP 400
            R +FV T           A    +    L            ++   G DR       +P
Sbjct: 309 HRLQFVDTIQSRKFYNDSKATNILATTKALSAFEQ-----PTILLAGGLDRGNEFDELKP 363

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M  +        I+T      E   K        GI       N  +A+  A  +  ++
Sbjct: 364 FMKHVKG------IIT----FGETAPKFVKLGEELGIHHVKHVDNVEQAVPAAFNISEEE 413

Query: 460 DVLVV 464
           DV+++
Sbjct: 414 DVILL 418


>gi|238897980|ref|YP_002923660.1| bifunctional folylpolyglutamate synthase; dihydrofolate synthase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465738|gb|ACQ67512.1| bifunctional: folylpolyglutamate synthase; dihydrofolate synthase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 428

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 94/373 (25%), Gaps = 30/373 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + ++ V GT+GK +    +++I    G           I    +        P     
Sbjct: 47  PAKWVITVGGTNGKGTTCRVLERILIEDGYKVGVYSSPHLICYRERVRIQEKMLPEKCFT 106

Query: 173 ALSYLSS------------QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                               G     +   SH L    L+         TN+    +   
Sbjct: 107 DAFDQVEKARGQISLTYFEFGTLVALLLFKSHQLGVVVLEVGLGGRLDATNIVDSDVAAI 166

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                     +      + +E   I   +      V+         +     +   +   
Sbjct: 167 TNIDFDHIKFLGKDRHSIGREKAGIFRTNKPA---VVADPDIPDSVIRVAKEKAAHLRPI 223

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                   Q      E K+   +        + NA  A  +        +          
Sbjct: 224 DQSWTFRPQGNQWIWESKERMLIDLPLPNVPLINAACALAVLHYFPKIISKEAIKRGL-- 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG------RIIVVFGCGGDR 394
                        +   + +D AH  ++   +L ++            ++  V G   D+
Sbjct: 282 KGASLSGRFQMIDQKPLVILDVAHNPHAARYLLNHLTQFLKNAAKPGAKLHAVVGMRKDK 341

Query: 395 DQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D         I  +  D       + PR   P +I A  +          +   A   A+
Sbjct: 342 DIKGTLD---ILSERVDHWYCAKLSEPRG-APAQILASFLQ--KSAFLSPDVKSAWNQAM 395

Query: 454 EMLNKQDVLVVAG 466
           +  N +D+L+V G
Sbjct: 396 QAANPEDILLVFG 408


>gi|294791077|ref|ZP_06756235.1| UDP-N-acetylmuramate--alanine ligase [Scardovia inopinata F0304]
 gi|294458974|gb|EFG27327.1| UDP-N-acetylmuramate--alanine ligase [Scardovia inopinata F0304]
          Length = 533

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 59/184 (32%), Gaps = 14/184 (7%)

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              +     +PG     NA  A    I +G++     +     +    RFE  G      
Sbjct: 334 PGRYPVKLRVPGLHNARNAAAAIICSILLGMNPHQACQAAYTFYGAKRRFEIRGVERA-V 392

Query: 357 RIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAI 414
            +  DYAH    +  +LK   R     +I V+F      R           AL LAD  +
Sbjct: 393 TVVDDYAHHPTEIVALLKAARRRFPQSKIRVIFQPHLYSRTFYFAQQFAD-ALSLADDVM 451

Query: 415 VTDDNPRSEDPEK--------IRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           VT   P  E  E         I + +    G        +  +A R         DV++ 
Sbjct: 452 VTGIFPAREKQEDWPQVSADTIVSLMKKENGPEFSASIDDMNQAGRLMASHCGPGDVVIT 511

Query: 465 AGKG 468
            G G
Sbjct: 512 VGAG 515


>gi|268316395|ref|YP_003290114.1| UDP-N-acetylmuramate [Rhodothermus marinus DSM 4252]
 gi|262333929|gb|ACY47726.1| UDP-N-acetylmuramate [Rhodothermus marinus DSM 4252]
          Length = 504

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 85/237 (35%), Gaps = 19/237 (8%)

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +   + R+  A  R   +         +       +    I    +   F  PL G 
Sbjct: 248 DDPTVRQVARSCRAQVRTYGLHTLCDVTVGQVYPTFEGQHFTLIVDGRELGRFFLPLSGR 307

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL      + IG+    + E L     +  R E  G  + G  +  D+AH   ++
Sbjct: 308 HNLRNALAVCAFGLEIGLSPEQLREGLAGFPGMKRRLEVRG-EAGGVLVVDDFAHHPTAV 366

Query: 370 EMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDD----NPRSE 423
              L+  R      R++ +F    +  + KR       A D AD   ++      N R E
Sbjct: 367 RETLRAARQRWPDRRLVAIFEPRSNSSRRKRFEQAYMEAFDDADEVWLSMPPFRHNDRPE 426

Query: 424 ---DPEKIRAEIIH-GIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
              DPE + A I   GIP  + +G + +      +E L   D+ ++   G     HE
Sbjct: 427 DFFDPESVAAGIRARGIPAHVAEGADVLL--PLLLEALRPGDIALIMSNGAFGNLHE 481


>gi|150007410|ref|YP_001302153.1| folylpolyglutamate synthase [Parabacteroides distasonis ATCC 8503]
 gi|149935834|gb|ABR42531.1| folylpolyglutamate synthase [Parabacteroides distasonis ATCC 8503]
          Length = 439

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 107/383 (27%), Gaps = 33/383 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSP 167
                 + V GT+GK SV+  +  I ++SG           +           +++    
Sbjct: 43  HKAYKTIHVAGTNGKGSVSHLLAAILRQSGFKVGLYTSPHLVDFRERIRVNGKKISQDYV 102

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHR-------------------LDGIKLIAGS 208
           +   +                 SS   +  R                    + I  I   
Sbjct: 103 VDFVERHRSFFEPLHPSFFELTSSMAFEYFRDQQVNYAVIEVGLGGRLDSTNIITPILSI 162

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH  +    +    A+     +     +        +       +A   G    
Sbjct: 163 ITNISLDHTQFLGDTEEKIAAEKAGIIKK-GVPALLGEAEKQSVYDVFKNKAEEVGAPFY 221

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                       ++         ++       +      +     V +A+      + + 
Sbjct: 222 YAQRMDMVKDECRLTVGGKWFFPSVEYGEIQGELGGEVQVRNAVTVLSAIHILRTELGVD 281

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRI 384
           I    V E    +  + G      T      +  D  H     E + ++++      G+I
Sbjct: 282 IIPEAVHEGFAHVTKLTGLMGRWQTLRSKPTVICDTGHNVGGWEHLAEHLKVLRQYCGQI 341

Query: 385 IVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            ++ G   D+D      +M + A      A V    P  ED       + HG+ G +   
Sbjct: 342 YMIVGMVNDKDIDGVLSLMPQDAFYFFTQASVERAMPV-EDFA--VKAMRHGLSGTL-CD 397

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
              +A+  A+    + D++ + G
Sbjct: 398 TVQDAVEKALRRARENDLIFIGG 420


>gi|289177338|gb|ADC84584.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 584

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 51/175 (29%), Gaps = 13/175 (7%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG     NA  A    + +G+D+               RF+  G       +  DYAH
Sbjct: 389 RIPGLHNARNATAAILAAVLLGMDAERAAVAAGTFLGANRRFQIRG-TVSDITVVDDYAH 447

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +  +LK  R       + V        R Q         AL LAD  IVT   P  
Sbjct: 448 HPTEITALLKAARRRYPDSQLHVLFQPHLFSRTQFFAQEFAD-ALSLADDVIVTGIFPAR 506

Query: 423 ED--------PEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E         P  I       G        +   A +         DV+   G G
Sbjct: 507 EKQSDFPQVTPNTIVDNAHGDGSYEIEAVDDMSLAAQMLAMRAQPGDVIFTVGAG 561


>gi|269955949|ref|YP_003325738.1| FolC bifunctional protein [Xylanimonas cellulosilytica DSM 15894]
 gi|269304630|gb|ACZ30180.1| FolC bifunctional protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 468

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 7/105 (6%)

Query: 360 VDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           VD AH  +  + ++  +       R++ V G  GD+D     ++  +   LA++ +  + 
Sbjct: 338 VDVAHNPHGAQALVDTLDEVFEFTRLVGVVGIMGDKDAEG--LLATLEPVLAEVVLTRNS 395

Query: 419 NPRSEDP---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           + RS DP    +I  ++  G        +  EA++ A ++  + D
Sbjct: 396 SDRSADPLDLREIAEDVF-GEDRVHVVESLAEALQVAADLAERDD 439


>gi|222474750|ref|YP_002563165.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Florida]
 gi|222418886|gb|ACM48909.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Florida]
          Length = 482

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 129/419 (30%), Gaps = 56/419 (13%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTG 122
           Q A+ +V S+A    +    + I +   +L   +   K L               + V+G
Sbjct: 76  QNADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKALGA----------GRTIVVSG 125

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  I + +G+             +  + ++                    
Sbjct: 126 SHGKTSTTGMIASIMEHAGMDPTVF-IGGIAFHYGNNYKMGAGE---------------W 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V  + S  G        +       TNL  +H D +   +A           +    +
Sbjct: 170 AVVEGDESDAGF-----TELPCEIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGA 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +            K      C  ++ G +G  +       + +     I     +   
Sbjct: 225 SVMPSRLSFTLGNGAK------CSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEIC 278

Query: 303 LF---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   V NAL AA +   IG+    +   LE    V  RFE +  N  G    
Sbjct: 279 CGVRLPVPGRHNVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEIIA-NVGGVTFV 337

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
            DYAH    +E      + + TSGR+I +       R Q              D  I+TD
Sbjct: 338 DDYAHHPTEIEASRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKF-DYLILTD 396

Query: 418 DNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             P  E+         I  EI   G    +      +AI   +       DV++  G G
Sbjct: 397 VYPAGEEVISGCESLDIVREIKSRGFDQVVHASTP-DAITDIVASVAQPGDVVIAMGAG 454


>gi|153837900|ref|ZP_01990567.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ3810]
 gi|149748678|gb|EDM59529.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ3810]
          Length = 452

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 111/355 (31%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R             +       K+    +K +V
Sbjct: 205 HHLVRTVPGNGLILAPKQDQALADVLERGCWT---ERQFSGEDGDWQAHKLVLDGSKFEV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 ALQGE-KVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 EQ-GITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + I  +            +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPDNIEWSVQDIAEQCKQ---PAFVDADMDNFVAKIVERAQPGDQILV 431


>gi|261340708|ref|ZP_05968566.1| FolC protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317124|gb|EFC56062.1| FolC protein [Enterobacter cancerogenus ATCC 35316]
          Length = 422

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 110/382 (28%), Gaps = 34/382 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            + A     K    +  V GT+GK +    ++ +   +G           +    +    
Sbjct: 37  QVAARLDVLKPAPFVFTVAGTNGKGTTCRTLESVLMAAGYKVGVYSSPHLVRYTERVRVQ 96

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T  P     A            S+       +   L  + L   +  ++    +     
Sbjct: 97  NTELPESAHTASFAEIEAARGETSLTY----FEYGTLSALWLFKQAQLDVVILEVGLGGR 152

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       +                D  S    K       +   VG       +  V
Sbjct: 153 LDATNMVDADVSVVTSIALDHVDWLGPDRESIGREKAGIFRAGKPAVVGEPDMPHTIADV 212

Query: 283 --------------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                              +       + +      PLP   Q   A   A L  +    
Sbjct: 213 AKEKGATLLRRDVDWQYSVEDNGWCYRDAQGALDNLPLPQVPQPNAATALAALRASGLAV 272

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVV 387
           S   +    K  ++PGRF+ V  + R   + +D AH  ++   +   ++++   G++  V
Sbjct: 273 SEQAIRDGIKNAILPGRFQIVSESPR---LILDVAHNPHAAAYLAGRLKSLPKTGQVRAV 329

Query: 388 FGCGGDRDQGKRPIMGKIALDLA--DIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            G   D+D G     G +A   +  D       + PR    E++ A +  G         
Sbjct: 330 IGMLHDKDIG-----GTLACMESVVDSWYCAPLEGPRGATAEQLMAHLGEGKAYASVV-- 382

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             EA   A+     +D ++V G
Sbjct: 383 --EAWHAAMADAKPEDTVLVCG 402


>gi|156932462|ref|YP_001436378.1| hypothetical protein ESA_00241 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530716|gb|ABU75542.1| hypothetical protein ESA_00241 [Cronobacter sakazakii ATCC BAA-894]
          Length = 459

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVVAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYAPRTLVLNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +   ++   G                      
Sbjct: 208 VRIVPGQGKIIWPENDINLKQVMAMGCWSEQEQLGEQGRWQAKKLTNDASKWEVWLDGEC 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +     + L GE  + N L A      +G+  A   + L        R E  G  +
Sbjct: 268 VGQVE-----WQLVGEHNMQNGLAAIAAARHVGVTPADAAQALGSFVNARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGVCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +   +     P ++       I       +    +   ++     D ++V
Sbjct: 377 SLGRADEVFLFQPHH---IPWQVAEVADACIQPAHWSADIDTLVEMIVKTAQPGDHILV 432


>gi|325578748|ref|ZP_08148795.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159572|gb|EGC71704.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 451

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 67/211 (31%), Gaps = 7/211 (3%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   N GC               +       +        K  +  + + G+  ++NAL
Sbjct: 227 VKETLNMGCWSEQQLIGKGKEWFAERITNDCSEFAVFHHGEKVAEVKWNIVGQHNMHNAL 286

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A       G+      + L        R E  G    G  +Y D+AH   ++   L  +
Sbjct: 287 MAIAAAYHAGVKIEDACQALGSFINAKRRLEVKG-EVNGITVYDDFAHHPEAILATLTAL 345

Query: 377 RTITSG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R    G  RI+ V     +  + G        AL  AD   +   +    D  +I  +  
Sbjct: 346 RDKVGGGVRILAVLEPRSNTMKMGVHKDEIAPALGRADAVFMLQPDNIPWDVAEIAGQ-- 403

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +      GN  + +   +      D ++V
Sbjct: 404 -CVQPAHYTGNVDKLVDMIVAEAKPTDHILV 433


>gi|301155887|emb|CBW15356.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus parainfluenzae
           T3T1]
          Length = 475

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 144/447 (32%), Gaps = 60/447 (13%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILV 94
           R  QAG  IF+                  QGA  +VVSSA      +  A  ++  P++ 
Sbjct: 58  RLAQAGAKIFIGHQAENV-----------QGASVVVVSSAIHEDNPELIAAKQNRIPVIQ 106

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                + L+      +G      +AV GT GK++  + +  I       +          
Sbjct: 107 RA---QMLAEIMRFRHG------IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGG 153

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                 +           A +  S     H+    S                   TN+  
Sbjct: 154 LVKSAGKNAHLGASRYLIAEADESDASFLHLQPMVS-----------------VVTNIEP 196

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D ++       A    F   LP    A++ ADDA   E++ +            +  
Sbjct: 197 DHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDAVLMELVPQVGRQVLTYGFSEHAD 256

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVL 333
               ++       +   T+     +   +   +PG+    NA  A  +    GI +  +L
Sbjct: 257 Y--RIEDYEQTGFQGHYTVVCPSGERINVLLNVPGKHNALNATAALAVAKEEGIGNEAIL 314

Query: 334 EHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           E L        RF+ +G   R     R+  DY H    +++ +K  R    G   +V   
Sbjct: 315 EALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVDVTIKAARE-GWGDKRIVMIF 373

Query: 391 GGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIE 441
              R    R +  +    L+  D  I+ D     E P      + +   I + G    I 
Sbjct: 374 QPHRYSRTRDLFDEFVQVLSQVDALIMLDVYAAGEAPIVGADSKALCRSIRNLGKVDPIL 433

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +      +++   D+++  G G
Sbjct: 434 VSDTEQLGDVLDQIIQDGDLILAQGAG 460


>gi|260220013|emb|CBA27126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 513

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 131/388 (33%), Gaps = 48/388 (12%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           +   ++L A R    +   +LA+TGT+GK++V S   Q+   +G +    G         
Sbjct: 112 SLYSMALEALRTVRAYQPAVLAITGTNGKTTVTSLTGQLIAHAGKTVAVAGNIGP----- 166

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                T    +         +        +E SS  LD       +  A    N+ +DH+
Sbjct: 167 -----TLLDTLT----QHLQADTLPDVWVLELSSFQLDA--AGSFEPTAAVVLNVTQDHL 215

Query: 218 DYHQTQQAYFNAKMRLFEE-------------LLPKESPAIIYADDAYSKEVMKRAHNAG 264
           D+H + QAY  AK R+F +             +  +  P  +       +  +    +  
Sbjct: 216 DWHGSMQAYAGAKARIFGQRGMMVLNREDATVMAMRPEPVRVRLQKPQERAYISFGTDMP 275

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG--------EFQVYNAL 316
            R    G +     +  V A+   +      + ++   +  L               NAL
Sbjct: 276 QRPGDFGIEDVNGMVWLVRALEADETRKRRKDEEEEIHIQRLMPADALRIRGRHNASNAL 335

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  LC + G   A +L  L +    P R E VG  +              +       +
Sbjct: 336 AALALCASAGCALAPILYGLREYRGEPHRVEPVGIINDVEFFDDSKGTNVGATVA---AL 392

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHG 435
           + + + R I+V   G  + Q   P+            ++        D   IRA + + G
Sbjct: 393 QGLGADRRIIVILGGEGKGQDFAPL-AAPVERYVRAVVLI-----GRDAPLIRAALELTG 446

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           IP  ++  +   A+  A    +  D ++
Sbjct: 447 IP-LVDADSMASAVTLANAKAHAGDAVL 473


>gi|326790202|ref|YP_004308023.1| UDP-N-acetylmuramate/alanine ligase [Clostridium lentocellum DSM
           5427]
 gi|326540966|gb|ADZ82825.1| UDP-N-acetylmuramate/alanine ligase [Clostridium lentocellum DSM
           5427]
          Length = 460

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/408 (16%), Positives = 122/408 (29%), Gaps = 42/408 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V +A   +D      ++   +      KFL +             + V+GT GK++  S
Sbjct: 74  IVYTAAIHEDNPELQLAHEKHITTITRSKFLGILMKHFD-----TPICVSGTHGKTTTTS 128

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +      + L          I      N     SP +L +A  Y  S       +    
Sbjct: 129 MLAHGLMAADLDPTI--TVGGILKAIHGNIRIGQSPYFLTEACEYCDSFLDFFPQIGI-- 184

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                              N+  DH+DY +      ++  +   ++      AI      
Sbjct: 185 -----------------ILNIEEDHMDYFKDINQIRHSFQKFSSKIPSNGFLAINGKV-- 225

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + +      C+  + G    +    +    ++K   +  V   +            
Sbjct: 226 --PNLDEFTAPLSCKTETFGIGSHYNWTAENITFNDKACASFDVYYNETFMTHLDLHVPG 283

Query: 312 VYNALVAAGLCIAIGI---DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            +N L A  +C        +  L+ + LE       RFE  G       I  DYAH    
Sbjct: 284 QHNILNALAVCSVYHFLGLELHLLGKGLEAFTGADQRFEIKG-KINDITIVDDYAHHPTE 342

Query: 369 LEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPE 426
           +   L+  +      + VVF      R +        +    A+  I+TD     E +P 
Sbjct: 343 IAATLEVAKAYPHNHLYVVFQPHTYTRTKAFLDDFAAVLSS-AENVIITDIYAAREKNPG 401

Query: 427 KIRAE-----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            I AE     I       +   +  +      E     D+++  G G+
Sbjct: 402 DISAEDIIKKINKKGKNALYMKDFEQIANYLNEHTVPNDLVITMGAGN 449


>gi|260584179|ref|ZP_05851927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
 gi|260158805|gb|EEW93873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
          Length = 453

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 92/278 (33%), Gaps = 21/278 (7%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L    +D  K       N+   H+DYH +++ Y  AK++L +     +      
Sbjct: 169 ELSSFQL--MGIDQFKPKIACIVNIFSAHLDYHGSREEYIKAKLQLTKNQTEDDYLVYNA 226

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                   + +  +                 ++             + E         +P
Sbjct: 227 DYPELITLIEEHTNATLVPFSRKNSLEFGASVEGDYIC-------FNGEKVIPVSTIQVP 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A  +    G  +  + + ++  H V  R +FV   ++        A    
Sbjct: 280 GTQNVENVLAAVAIAKLAGATNEGIKKAVQNFHGVKHRTQFVKEVNKRRFYNDSKATN-- 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
            +      +R+ T  + +++   G DR  G   ++  +      +          E  EK
Sbjct: 338 -IIATQTALRSFT-NQSVILIAGGLDRGNGFDELIPDLTAVSGIVLY-------GETKEK 388

Query: 428 IRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++      GIP         EA + A E+  + D++++
Sbjct: 389 LQEAAKVAGIPVIEVVNTLEEATKKAYEISKENDIILL 426


>gi|238761744|ref|ZP_04622718.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia kristensenii ATCC
           33638]
 gi|238699858|gb|EEP92601.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia kristensenii ATCC
           33638]
          Length = 461

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 102/356 (28%), Gaps = 28/356 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAIAGTHGKTTTAGMVTWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLVMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  A+       
Sbjct: 202 KQFHHLVRLVPGTGKIIVPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVAVDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 FLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG--KIALDL- 409
           + G  +Y D+AH   ++   L  +R+   G    +      R    +  M   ++A  L 
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTAR-ILAVLEPRSNTMKLGMCKNELAPSLG 379

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +         P ++       I       +    +   ++     D ++V
Sbjct: 380 RADEVFLFQPQH---IPWQVVEVAEACIQPAHWSADIDTLVDMVVKTAQPGDHILV 432


>gi|254291457|ref|ZP_04962249.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
 gi|150422647|gb|EDN14602.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
          Length = 451

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             +      GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDTALADVLQRGCWSETEFSGEQGEWQAEKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|323487062|ref|ZP_08092370.1| tetrahydrofolate synthase [Clostridium symbiosum WAL-14163]
 gi|323399563|gb|EGA91953.1| tetrahydrofolate synthase [Clostridium symbiosum WAL-14163]
          Length = 455

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 32/191 (16%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +++    P   E+Q  N+++A      +GI    V+       V PGR E +  +     
Sbjct: 258 REYRLDIPFAAEYQAVNSMLAFRTAELMGIG-EDVICRGIGQAVWPGRMEQIMKD----- 311

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADI 412
           +Y+D AH    +    K  RTI     GR I+VF    D++      M +I     + D+
Sbjct: 312 VYLDGAHNEGGIREFAKAARTIAARHGGRKILVFAVVSDKEY---REMAEILCREFMPDV 368

Query: 413 AIVTD-----------------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
            I+T                  D   + D      +   G           EA++ A+  
Sbjct: 369 LILTQIEYGRGLAINELNQAAHDAWNAVDGRAGTRDNGSGHD-IRVIKTVEEALKEAVNE 427

Query: 456 LNKQDVLVVAG 466
              +D +  AG
Sbjct: 428 KKAEDTVFCAG 438


>gi|154687119|ref|YP_001422280.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus amyloliquefaciens
           FZB42]
 gi|166222954|sp|A7Z7S3|MURC_BACA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154352970|gb|ABS75049.1| MurC [Bacillus amyloliquefaciens FZB42]
          Length = 432

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 115/395 (29%), Gaps = 54/395 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S  + +  +    P++      KFL+ +  +         +AVTG  GK+S    +  
Sbjct: 71  PDSHPEIAKALAEGIPVIR---YHKFLAEYMKKYTS------VAVTGAHGKTSTTGLLAH 121

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + Q++  +SF IG  +   + + +            +   +  S    +  +        
Sbjct: 122 VMQQAKPTSFLIGDGTGRGNESSEY-----FVFEACEYRRHFLSYQPDYAIM-------- 168

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                         TN+  DH DY       F+A        L      I   DD Y   
Sbjct: 169 --------------TNIDFDHPDYFANIDDVFDAFQ---NMALQVNKGIIACGDDEY--- 208

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K   N        G +  F     V                   F  P  G   V N+
Sbjct: 209 LPKIHANVPVVYYGTGEENDFQARNIVKNTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNS 268

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    LC    ID  ++   LE    V  RF           +  DYAH    +++ ++ 
Sbjct: 269 LAVIALCHYEEIDVNMIKLGLESFGGVKRRFNEK--VIGSQVLIDDYAHHPTEIKVTIEA 326

Query: 376 IRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAE 431
            R     R I+         R Q       +     AD   + D      E+  K+   +
Sbjct: 327 ARQKYPEREIIAVFQPHTFTRTQSFLDEFAESLSA-ADRVYLCDIFGSARENVGKLTITD 385

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEML-----NKQDV 461
           +   I           ++  A E          D+
Sbjct: 386 LQEKIANAELIEENDTSVLKAHEGAVLIFMGAGDI 420


>gi|153834370|ref|ZP_01987037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi HY01]
 gi|148869218|gb|EDL68240.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi HY01]
          Length = 452

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 113/355 (31%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D   ++V++R      +              K+    +K +V
Sbjct: 205 HHLVRTVPGNGLILAPKQDQSLQDVIERGCWTEKQF---SGADGDWQAHKLVVDGSKFEV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 SLQGE-KVGIVDWDLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 EQ-GVTVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      ++I  +                 +   +E     D ++V
Sbjct: 380 ADEVFLFQPDSIDWSVQEIADQCKQ---PAFVDAEMDSFVAKIVERAQPGDQILV 431


>gi|56412738|ref|YP_149813.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|168237391|ref|ZP_02662449.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734517|ref|YP_002115436.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197361672|ref|YP_002141308.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56126995|gb|AAV76501.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194710019|gb|ACF89240.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197093148|emb|CAR58592.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197289700|gb|EDY29063.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 422

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 116/391 (29%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIETARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPA 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V            V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SRLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +  +A + AI+    +D ++V G
Sbjct: 376 N----VYDSVAQAWQAAIDAAQPEDTVLVCG 402


>gi|209694636|ref|YP_002262564.1| FolC bifunctional protein (tetrahydrofolate synthase)
           (folylpolyglutamate synthase) [Aliivibrio salmonicida
           LFI1238]
 gi|208008587|emb|CAQ78762.1| FolC bifunctional protein (tetrahydrofolate synthase)
           (folylpolyglutamate synthase) [Aliivibrio salmonicida
           LFI1238]
          Length = 426

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 113/371 (30%), Gaps = 22/371 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G           I    +           L 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMESILLNAGYRVGVYSSPHLIRYNERIRINGNDLSDSLI 105

Query: 172 KALSYLSSQGVTHVSVE-------ASSHGLDQHRLDGIKLIAGSFTNLG----RDHIDYH 220
                          +        A+      H++D + L  G    L      DH    
Sbjct: 106 SQSFAAIEAWRKDTPLSLFEFGTLAALWAFKAHQVDVLLLEVGLGGRLDATNVVDHDVSI 165

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T  A  +      +  +     A I+  D  +        ++                 
Sbjct: 166 ITSLAVDHVDWLGDDINVIGFEKAGIFRSDKPAICGQPNPPSSVAAHADDINADLHQVGY 225

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKL 339
           +     N+   T S +   FD       +  + NA  A   L  A    + + +    K 
Sbjct: 226 QFTYKVNEDNKTWSWQSGAFDLTGLPLPKLPLANAATAIMALGCADLELTDVNIVEGLKA 285

Query: 340 HVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ 396
             +PGR + +  +       +  D AH  +S   +++ +R    + +I  V G   D+D 
Sbjct: 286 ASLPGRMQILTRDEESIEPLILLDVAHNPHSAHYLVQQVRLRYPNKKIHAVVGMLHDKDI 345

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEM 455
                      +   +  V      S       +E++  I     E  + +EA + A++ 
Sbjct: 346 E------STVNEFTGVVDVWYPASLSGPRAAKASELVAFIEQETTEYSSPVEAFKVALQH 399

Query: 456 LNKQDVLVVAG 466
               ++++V G
Sbjct: 400 AGDDELILVFG 410


>gi|153801140|ref|ZP_01955726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
 gi|124123373|gb|EAY42116.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
          Length = 451

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             +      GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDTALADVLQRGCWSETEFSGEQGEWQAEKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|315180808|gb|ADT87722.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           furnissii NCTC 11218]
          Length = 422

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 101/368 (27%), Gaps = 22/368 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +        P    
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLEAGYSVGVYSSPHLIRYNERVRINGQDVPDEQH 105

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    +++       +   L  +++      ++    +       A      
Sbjct: 106 TQAFDFVEQQRGDITLSL----FEFGTLAALRIFQTEQVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +                D       K       +    G          H   + A  +
Sbjct: 162 DVSVITSLAIDHVDWLGSDINVIGFEKAGIYRSGKPAICGQPKPPATVAAHADDIGAEFH 221

Query: 288 KQQVTI--------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +  +            + +   F         +     A  L         +   ++   
Sbjct: 222 QVGIQFTYDKVSETRWQWRSGSFELTDLPLPTLPLPNAATALMALGCSGLEISDVNIVDG 281

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGK 398
                    +   S    I +D AH  +S E ++  ++    G+ + +V G   D+D   
Sbjct: 282 LKKATLAGRMQKISDAPTILLDVAHNPHSAEYLVSQLKLRFPGQSVHLVVGMLHDKDVKS 341

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              + K  +     A +    PR+   E++   +      +    N + A   A+     
Sbjct: 342 TLAILKPVVKQWYPASL--SGPRAASAEELCQYLEAPQTRY---ANPVAAFEAALTQAQA 396

Query: 459 QDVLVVAG 466
            DV+VVAG
Sbjct: 397 DDVIVVAG 404


>gi|261211101|ref|ZP_05925390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
 gi|260839602|gb|EEX66213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
          Length = 451

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             +      GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDTALADVLQRGCWSETEFSGEQGEWQAEKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|221194726|ref|ZP_03567783.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
 gi|221185630|gb|EEE18020.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
          Length = 470

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 128/419 (30%), Gaps = 50/419 (11%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGK 126
            +V SSA    +           PI      R K LS  +           +AV GT GK
Sbjct: 73  VVVTSSAIPETNPEVIRARELGLPIW----PRAKMLSYLSR------GRKTIAVAGTHGK 122

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++ +S +  +  +     SF IG    +  +  + R  +          S  S       
Sbjct: 123 TTTSSMIATMLDKMDLDPSFLIG--GVVEGYDTNGRNGSGDYFVCEADESDGSFMY---- 176

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  DH+D++ T +         F  LL      I
Sbjct: 177 ----------------LTPNVIVITNIEADHLDHYGTLENIEKT-FCDFMRLLDPSETVI 219

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  D+ +  E+ +                     +             +  G   D + P
Sbjct: 220 INGDNPHWVELARSTGRKVVSYGFSETCDYVCRARMRTQGIENPLSVTTPSGACIDVVLP 279

Query: 306 -LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             PG   + NA  A      +G D +     L +      RF  VG    G  +  DY H
Sbjct: 280 ASPGTHNIANACAALATADILGYDLSEAARALSQFKGARRRFTHVGDIC-GITVVDDYGH 338

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               ++  L     +   R+I VF      R +    +    A D  D  +V D     E
Sbjct: 339 HPTEIKATLSAALPLGFKRVICVFQPHRYSRTKDLADLFAH-AFDGVDTLLVMDVFSAGE 397

Query: 424 DP------EKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            P      + + + +     +       +R + + T  E+    D+++  G G +   I
Sbjct: 398 LPIPGISGKTVSSHVKDAGKVSDVRYIPSRHKLVDTLCELCRPGDLVITQGAG-DVTQI 455


>gi|123967558|ref|YP_001008416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           AS9601]
 gi|123197668|gb|ABM69309.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 449

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 83/280 (29%), Gaps = 22/280 (7%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N  +  I                  E++   +     +         + + N      
Sbjct: 158 TINKYKSDIGIINNIDFDHCDHFSNLSEVICSFNSFAKNSKKLLLNFDCETSSNNFYSNF 217

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIA 324
                        +       + TI    ++ +       P+PG   + N   A      
Sbjct: 218 KWSNTTAKNVTYAIIPTEINARYTIGKYYENGNLIGSLKIPIPGLHNLSNITAAIAASRM 277

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR------- 377
           IG+D   + ++++ L +   RFEF G       +Y DYAH  N ++  +K  R       
Sbjct: 278 IGVDFIEIKKNIKYLKLPKKRFEFRGQIDE-RSLYDDYAHHPNEIKETIKLGRLLIQQKH 336

Query: 378 --TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------I 428
                  R+I +F      R +       +     AD+  VT      E  E+      I
Sbjct: 337 NNECQQRRLIAIFQPHRYSRVKQFTKEFAEELSK-ADVIYVTSIYGAGEGNEEKITSKMI 395

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I           N  E  +   E+  K D+++  G G
Sbjct: 396 TDLIYKKNENVSYINNYYEVTKNFYELTQKGDLILNMGAG 435


>gi|294794040|ref|ZP_06759177.1| tetrahydrofolate synthase [Veillonella sp. 3_1_44]
 gi|294455610|gb|EFG23982.1| tetrahydrofolate synthase [Veillonella sp. 3_1_44]
          Length = 435

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 44/158 (27%), Gaps = 9/158 (5%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
              +    L       S   +          GRFE             D AH +   E  
Sbjct: 265 CALMAVRLLMKEDTNISEETMREGFARTTWAGRFEVKRGL--DRTFIFDGAHNAAGAESF 322

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRA 430
                         VV     D+DQ     + +  +   D  + V     R+E PE +  
Sbjct: 323 AMTYNELFKDTPKTVVMAILKDKDQE---AIIREVIKSGDTVLAVPAPTDRTEVPENLVE 379

Query: 431 EIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I   +P        +   A+  A +     D++ V G
Sbjct: 380 VIRRTVPKVTAQTAESVEAALALAYKHTKTGDIIAVCG 417


>gi|237729160|ref|ZP_04559641.1| Murein peptide ligase [Citrobacter sp. 30_2]
 gi|226908889|gb|EEH94807.1| Murein peptide ligase [Citrobacter sp. 30_2]
          Length = 458

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 100/359 (27%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 203 QFHHLVRIVPGQGRIIYPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVW 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWGLVGEHNMHNGLMAIAAARHVGVVPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV 432


>gi|309798668|ref|ZP_07692935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
 gi|308117714|gb|EFO55123.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
          Length = 391

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 124/396 (31%), Gaps = 44/396 (11%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
              P ++V++        A+    K   ++ AVTG++GK++    +  +   +  +    
Sbjct: 7   EGQPYILVEDVLTAFQDLAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLATTFKTYKTQ 66

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +                  L                +E     L    L        
Sbjct: 67  GNYNNEIGLPYTVLHMPDDTEKL---------------VLEMGQDHLGDIHLLSELAHPK 111

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +              +     AK +L      ++   ++   D     +++       +V
Sbjct: 112 TAIVTLVGEAHLAFFKDRSEIAKGKLQIADGMEKGGVLLAPVDP----IVEDYLPTDKKV 167

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +  G   +   L+       K  +T  V   +     P+ G++   NA++A+ + +  G+
Sbjct: 168 VRFGPGAE---LEITELTERKDSLTFKVNFLEQALDLPVTGKYNATNAMIASYVALQEGV 224

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT---SGRI 384
               + +  + L +   R E+    +    +   Y     ++++IL+    I     G+ 
Sbjct: 225 TEEQIRQAFQNLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKK 284

Query: 385 IVVFGCG---GDRDQGKRPIM-GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--- 437
           I V       GD+       M   I  D+ D  I        ED   +        P   
Sbjct: 285 IAVLADMKELGDQSVQLHNQMILSITPDVLDTVIF-----YGEDIADLAQLASQMFPIGH 339

Query: 438 ----GFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKG 468
                   + ++ EA ++   E L   D +++  KG
Sbjct: 340 VYYFKKTAEEDQFEAMVKQVKESLGAHDQILL--KG 373


>gi|317493278|ref|ZP_07951700.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918671|gb|EFV40008.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 500

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 125/423 (29%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAIAGT 131

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 132 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +             F   LP    
Sbjct: 189 ------------------LQPMVAVVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +              +       
Sbjct: 231 AVMCIDDPVVRELLPRVGRHITTYGFSEDADVRIESYQQNG-AQGTFFICRQDKPRLAVT 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  A  +    GI    +L  LE       RF        E V      
Sbjct: 290 LNAPGRHNALNAAAAVSVATEEGIADEDILRALEGFQGTGRRFDFLGEYALENVNGKEGK 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     R +V+        R +        +     D+ 
Sbjct: 350 AMLVDDYGHHPTEVDATIKAARAGWPNRRLVMIFQPHRFTRTRDLYDDFANVLSQ-VDVL 408

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    +   +      T  + L   D+++  G
Sbjct: 409 LMLDVYSAGETPIPGADSRSLCRTIRGRGKLDPVLVSDAATLPATLAQFLQNDDLILTQG 468

Query: 467 KGH 469
            G+
Sbjct: 469 AGN 471


>gi|317470741|ref|ZP_07930126.1| FolC protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901876|gb|EFV23805.1| FolC protein [Anaerostipes sp. 3_2_56FAA]
          Length = 317

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 5/110 (4%)

Query: 359 YVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VT 416
           + D AH  +  E +L+ + +  T+ +II + G   D+D    P M KI   ++D    VT
Sbjct: 201 FCDGAHNPDGAEKLLRFLQKNFTNKKIIYIMGVLSDKDY---PQMLKIMSPMSDEIYTVT 257

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  R+     +            E G+  E  +   +   + DV+VV G
Sbjct: 258 PEGDRALPSGVLADAARPFYRKVTEGGSLGECYQKVKKECGQDDVIVVFG 307


>gi|193214547|ref|YP_001995746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226711896|sp|B3QWT5|MURD_CHLT3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193088024|gb|ACF13299.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 468

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 114/371 (30%), Gaps = 41/371 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS         I+A+TGT GK++V +  ++I +  G            +    +    
Sbjct: 102 ELASWFCK---AKIIAITGTDGKTTVTTLTKKIFEADGNE------NGYHAYALGNIGQP 152

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               +         S        +E SS  L+       +      TN+  DH+D +   
Sbjct: 153 FSDTVE--------SLSENDVAVIEISSFQLE--HCTSFRPNVTVITNITPDHLDRYDGN 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS----------VGYQ 273
              + A      +        I   D+    +            +               
Sbjct: 203 IQKYAAAKYRIYQNQTASDWLIYNDDNEILHQHFTDPERRASLPMKLVALSLEKNLGDEY 262

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
               + +    +         +  ++        G+  +YNAL AA    A+GID   + 
Sbjct: 263 EHCAYKENGRLVLKLTNEKEWLIEENQISTKQFRGQHNIYNALTAAAAASALGIDKKFIE 322

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + +     V  R EFV   ++   I    A T N+L   L  +        IV+   G D
Sbjct: 323 KSILSFEGVEHRLEFVRAVNQVDYINDSKATTVNALWYALDTVTP-----KIVLIAGGRD 377

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +      +   +   +  +  +       E  EK+       +   ++  +  EA+R A 
Sbjct: 378 KGNDYTKVFSFVKEKVRAVVAI------GESQEKVVQA-FGNLTKVMKAFSLDEAVRLAS 430

Query: 454 EMLNKQDVLVV 464
           +     D +++
Sbjct: 431 QEAEAGDTVLL 441


>gi|145627896|ref|ZP_01783697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145639344|ref|ZP_01794950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|144979671|gb|EDJ89330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145271647|gb|EDK11558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|309751218|gb|ADO81202.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2866]
          Length = 437

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 121/394 (30%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRTATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R     +   +   +  ++
Sbjct: 161 SFQLET--TYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLR-----IYHNAKVGVLNNE 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                             +      ++  +        +   I            L G  
Sbjct: 214 DRLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMVKDEVILP-----CEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+ V   +    I    A    S  
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVHQANGIRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R        A
Sbjct: 329 AALAGL--YIEGKLHLLLGGDG-----KGADFSELAELINQPHIICYCFGRD------GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 376 QLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|330469289|ref|YP_004407032.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
 gi|328812260|gb|AEB46432.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
          Length = 510

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 114/373 (30%), Gaps = 39/373 (10%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+ + G+     +AV GT GK+S  S V  + Q++G     +     IS         T
Sbjct: 108 LAAAMTGR---RTVAVAGTHGKTSTTSMVTMVFQQAGADPSFV-IGGEISEVGSGAHHGT 163

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                +                        +  R   I     S                
Sbjct: 164 GEYFVV---------------------EADESDRSFLIYRPFVSIVTNIEADHLNTYGDL 202

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A   A    F  L   +   I  ADDA  + +       G RV + G            A
Sbjct: 203 ANLEATFAEFARLTDPDGFIITCADDAGGQRLAATLRAQGRRVYTYGESADADLRLSEMA 262

Query: 285 IHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              +    ++        +F  P+PG     N+  A      + +        L     V
Sbjct: 263 SSARGVRYLAHIDGRSLGEFRMPVPGRHMALNSASAVLAAYLLELPLQAAEAALAAFPGV 322

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
             RFE  G    G  +Y +YA+   S+ + L+ +R +   GR++VVF     R    R +
Sbjct: 323 RRRFERKGVAD-GVLVYDEYAYHPTSMTLALQTLREVAGEGRLLVVFQPY--RLYRTRDL 379

Query: 402 MGKIALDLA---DIAIVTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
             +IA  LA   ++ ++    P       E    +   +       +   +   A     
Sbjct: 380 QSEIAEALAIADELVLLEVFGPGEQRGPGEGSAALIEAVALPAERKVFVDSWDAAPAEVA 439

Query: 454 EMLNKQDVLVVAG 466
                 DV+V  G
Sbjct: 440 RRARSGDVVVTMG 452


>gi|291542066|emb|CBL15176.1| folylpolyglutamate synthase/dihydrofolate synthase [Ruminococcus
           bromii L2-63]
          Length = 436

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 9/128 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRP 400
            P R E +   S    + +D AH  N +E +   I+     + I+ + G   D+D     
Sbjct: 290 NPARLELL---SEKPIVLLDGAHNPNGIEALKSAIQKFLPNKYIIAITGMLADKDVS--- 343

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
              K+   + D    V   NPR+  P K+  +    +   +   +   A   A E   K 
Sbjct: 344 TSVKLLDGVFDRVYTVPVHNPRAMHPAKLMQQYARFVDDTVTFESAEHAFDMAFEQAEKT 403

Query: 460 DV-LVVAG 466
           D  +V+ G
Sbjct: 404 DCAVVICG 411


>gi|163843689|ref|YP_001628093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           ATCC 23445]
 gi|163674412|gb|ABY38523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis ATCC
           23445]
          Length = 467

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 104/309 (33%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + +G      G   T               + L  
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKATGRDMQLGGNIGTA-------------ILTLEP 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +           VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 159 PCADR------FYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH-LKKVCAIHNKQQV 291
           + E L+     AII  DDAY + +  R H AG RV+ +  +           A     Q 
Sbjct: 207 IKERLVAASGTAIIGIDDAYCQAIADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQD 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E    + +  L G     NAL A   C++ G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAIVACLSAGLSREEIHAGLKSFPGLAHRMEQVGR 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG----------KRPI 401
             +   +    A      E     + +       +V G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFPQNIYWIVGGVPKAGGINSLTAFFPRVAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|84387794|ref|ZP_00990809.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio splendidus 12B01]
 gi|84377309|gb|EAP94177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio splendidus 12B01]
          Length = 452

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 110/356 (30%), Gaps = 29/356 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P+            ++   + GC   +           K       +  
Sbjct: 202 -RQFHHLVRTVPSNGRIFSPKQDTAIEDVLSRGCWSETESSGELGDWDAKKLVKDGSKFE 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               +       + L G+  V NAL+A      +G+   L  E L        R EF G 
Sbjct: 261 VYFQDECVGTVDWDLVGDHNVSNALMAIAAARHVGVTPDLGCESLATFINTKRRLEFKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  + + +II V         +G        +L  
Sbjct: 320 EVAGVSVYDDFAHHPTAIELTLGGLRNKVDTKKIIAVLEPRSATMKRGVHKETLADSLKQ 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
           AD   +   +    + +    ++           + ++A +   +      D ++V
Sbjct: 380 ADSTYLFQPD----NIDWSVQDVADACHQPAHVSDDMDAFVARIVSEAQAGDQILV 431


>gi|294085900|ref|YP_003552660.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665475|gb|ADE40576.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 473

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 126/415 (30%), Gaps = 44/415 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  +V S+A    +          + +V    + L       +       +AV GT GK+
Sbjct: 68  AALVVTSTAIKADNPEVVAARAGFLPIVHRA-EMLGELMRLRWS------VAVAGTHGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  S V  +   + +    I                    I    + + L       V  
Sbjct: 121 TTTSLVATLLDGAQIDPTVI----------------NGGIITGWGSNARLGKGKWMVVEA 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           + S           +K      TN+  +H+D+H + +A   A +     +       +  
Sbjct: 165 DESD-----GSFAKLKPTVAVVTNIDPEHLDHHGSFEALETAFLNFVSSIPFYGFATLCI 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-----GKDFDF 302
              A  + +                        +V   +    V +S        +  + 
Sbjct: 220 DHPAVQRMMAHIKDRRIITYGMSANADVRATNLRVEGRNMLFDVLLSDRLVGEMERIDNV 279

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
           LFP+ G+  V N L A  + + + ID+  + + L     V  RFE  G +  G  I  DY
Sbjct: 280 LFPMLGDHNVQNCLAAIAVALEMNIDAKKIKDSLAAFGGVGRRFETKGVS-DGVTIIDDY 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNP 420
            H    ++  L+  R +  G   ++      R      +          AD  +V D   
Sbjct: 339 GHHPVEIKAALQAGR-MMCGDNKLIAVVQPHRYSRLADLFTDFCGCFNDADDVLVADVYA 397

Query: 421 RSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKG 468
             E P        +   +           +   A+    +   NK D+++  G G
Sbjct: 398 AGETPIEGFDKAALVEGLRDHGHKGPAALDSQSALAQEIMNRTNKGDLVMCLGAG 452


>gi|261823145|ref|YP_003261251.1| UDP-N-acetylmuramate [Pectobacterium wasabiae WPP163]
 gi|261607158|gb|ACX89644.1| UDP-N-acetylmuramate [Pectobacterium wasabiae WPP163]
          Length = 461

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 104/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSS--FQIGPTSTI--SSFAQDNRLTTPSPIY 169
              ++AV GT GK++ A  V  I +  G        G       S+   D+         
Sbjct: 102 DRWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              A     S+ V +                          NL  DH D     +A    
Sbjct: 162 YDCAFFDKRSKFVHY------------------CPRTLVLNNLEFDHADIFDDLKAIQ-- 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                   L +  P         +   +K+    GC         + +   +  AI   Q
Sbjct: 202 ---KQFHHLVRLVPGTGKIISPTNDLNLKQVMAMGCWSEQELVGEEGVWRAQKVAIDASQ 258

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                      +  + L GE  ++N L+A      +G+  A     L        R E  
Sbjct: 259 YQVYLNNELVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELR 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI---- 405
           GT   G  +Y D+AH   ++   L  +R+   G    +      R    +  M K     
Sbjct: 319 GTE-HGVAVYDDFAHHPTAILATLSALRSKVGGTAR-ILAVLEPRSNTMKLGMCKNELAP 376

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +L  AD   +      +  P ++       I       +    +   ++     D ++V
Sbjct: 377 SLARADEVFLFQP---THIPWQVVEVAEACIQPAHWSADIDTLVENIVKTAQPGDHILV 432


>gi|269118800|ref|YP_003306977.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
 gi|268612678|gb|ACZ07046.1| UDP-N-acetylmuramate/alanine ligase [Sebaldella termitidis ATCC
           33386]
          Length = 448

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 18/254 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH++ H + +    +     ++        I+  +    +       
Sbjct: 171 LTPSYSIVTNVEADHLENHGSYENIKKSFEEFIDKTSD-----IVVLNKDCHEIKKLNLK 225

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAG 320
           N      S+  +   I+   +   + +    +   G+    F   +PGE  + N+L    
Sbjct: 226 NKNIIWYSINDESADIYAANIEYKNRESHYEVVKNGESLGKFRLSIPGEHNISNSLGVIY 285

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L      D   V E+L        R++ +   S    I  DYAH    +   +   + I 
Sbjct: 286 LAHEFLCDMDKVKEYLYNFRGANRRYQILYDKSIK--IIDDYAHHPTEITATINAAKKIE 343

Query: 381 SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED-----PEKIRAEIIH 434
           +G+I VVF      R         + +L LAD   +       E+       +  AE+I 
Sbjct: 344 TGKITVVFQPHRYSRTNFFLNEFAE-SLKLADEVYLLPIYSAEEENIYNISSEKLAELIG 402

Query: 435 GIPGF---IEKGNR 445
           G        E  +R
Sbjct: 403 GNTRVYSEEEISDR 416


>gi|183602422|ref|ZP_02963788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683263|ref|YP_002469646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191224|ref|YP_002968618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196630|ref|YP_002970185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218341|gb|EDT88986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620913|gb|ACL29070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249616|gb|ACS46556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251184|gb|ACS48123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289177340|gb|ADC84586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794217|gb|ADG33752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 481

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 108/360 (30%), Gaps = 24/360 (6%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL--A 171
           P   + +TGT+GK+S      ++ +  G ++  +G      S A  + +     + L   
Sbjct: 105 PAPWIGITGTNGKTSTTEMTSEMLKACGYTAPAVGNIGNALSAAALDPVNDVLCVELSSF 164

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +     S +         ++  LD H          S    G   +  +  Q A  +   
Sbjct: 165 QLHFTYSLELDCAAITNIAADHLDWHGGMANYATDKSKVFDGAKRVIAYNAQDARVSELA 224

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R  +     E       +    +  +K         L  G  G+   L  +    +  + 
Sbjct: 225 RTAQTAEGCEHIGFTLGEPVSGQIGIKDGWIVDMSGLCGGQTGEAYALAPIADFTHLAEP 284

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----E 347
                               + +AL A  L + +G D A  L  L++      R     E
Sbjct: 285 D------------GTIYPHLLADALTALILVVGLGADVATALNALKRFAPGGHRIQTVAE 332

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                     +    A  +++    L +         +V    G  +      ++ +   
Sbjct: 333 LASPEGTIRFVDDSKATNAHAARASLNSFAP----GSVVWIAGGLSKGATFEELVEQERN 388

Query: 408 DLADIAIVTDDN-PRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            L  + ++  D  P  E  +    E+ +  I           AI  A +     DV+++A
Sbjct: 389 RLKAVVVIGIDQKPMLEALKAKAPELPLTVIDPADNATVMERAIDAAADFAEPGDVVLLA 448


>gi|62185436|ref|YP_220221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           abortus S26/3]
 gi|81174946|sp|Q5L521|MURD_CHLAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62148503|emb|CAH64274.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila abortus S26/3]
          Length = 420

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 118/395 (29%), Gaps = 68/395 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             V S              +  I +V +        A +    H    L VTG++GK++ 
Sbjct: 62  LCVRSPGIKTSHPFVVEAKHRGIPIVTDI-----QLAFQDPEFHRYPSLGVTGSAGKTTT 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F+  + +  G+S+  +G                             +        VE 
Sbjct: 117 VLFLVHLLRSVGMSACAMGNIGFPI---------------------LQAMYQKGIRVVEI 155

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L +  ++   L A +  N+  +H+DYH T QAY  A                    
Sbjct: 156 SSFQLAEQEIEIPVLSAAAILNISENHLDYHYTLQAYTEA-------------------- 195

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                    ++H A C                   +   +++ + ++            +
Sbjct: 196 ---------KSHIAKCLQSPESLWVGDGVSFGKSYLEATREINLVLDKGSALKPL-YLHD 245

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              Y A  A        I     L+ +      P R E++G       I    A T +S+
Sbjct: 246 RNNYCAGYALAN-EVTKIPLESFLQAVLTFDKPPHRIEYLGEKDGVRYINDSKATTMSSV 304

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  ++       I+V   G ++      ++  +         V     R+E    I 
Sbjct: 305 EKALIAVKE-----NIIVILGGRNKGSNFASLIP-VLTQTVKHV-VAMGECRTE----IA 353

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +        +  +  EA+  A  +    DV+++
Sbjct: 354 QALSSSNLPLTQAQDLQEAVHVAQSIAQPGDVILL 388


>gi|110680536|ref|YP_683543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
 gi|118595688|sp|Q163I6|MURD_ROSDO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|109456652|gb|ABG32857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
          Length = 464

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 125/419 (29%), Gaps = 71/419 (16%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENILAVTG 122
             ++VS      Y   +    +     + V ++   F   FA+  +        ++AVTG
Sbjct: 68  ACLIVSPGIPHLYPAPNPVVRLALQAGVPVDNDIGLFFRSFATNAWANFDTAPRVVAVTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+ ++ +  I +  G  +   G                   + L            
Sbjct: 128 SNGKSTTSALIHHILEHVGRPATLAGNIGRGVLDIDPPHDGEVVVLEL------------ 175

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                  SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P  +
Sbjct: 176 -------SSYQTDLAR--SLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAEGGPDRA 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---- 298
                  D      +      G     V        L         ++  +S   K    
Sbjct: 227 IV---GVDEDEGLFLAGQLAEGRADDRVIRISFAQKLTGPGWQVFARKGFLSEYRKGKQI 283

Query: 299 ---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
              D   +  LPG     NA  A  +C ++G+   ++   L     +P R + VG     
Sbjct: 284 ASVDLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKVIEAALHSFQGLPHRSQLVGQKDGV 343

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQG--------KRPIMGKIA 406
             +       + + +   K +    S R I       G  D          K  ++G+ A
Sbjct: 344 RFVND---SKATNADAAAKALAAFPSIRWICGGLEKDGGMDALRNASASVVKAYVIGREA 400

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              A    V                               +A+  A       DV+++A
Sbjct: 401 AAFAMKLPV----------------------EAEICTTMAQAVEKAAREAEAGDVVLLA 437


>gi|256371401|ref|YP_003109225.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007985|gb|ACU53552.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 526

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 9/159 (5%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMI 372
           N   A  + + +G+    + E L ++   P R     + + G  +  D Y          
Sbjct: 358 NLACAVAVALELGVAPEDIAERLGRIKPAPNRLVAGVSPTSGVEVLDDTYNANPMGARRA 417

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRP-----IMGKIALDLADIAIVTD-DNPRSEDP- 425
           L  +     G    V    G  + G+R         K A  +A   IV    N R+ +  
Sbjct: 418 LDALGARRDGGGRRVVVTPGMIELGRRQYLENFKFAKAAAQVASHIIVVGRTNRRALEAG 477

Query: 426 -EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            ++ R E    +       +R  A+    EML   DV++
Sbjct: 478 ADEGRDEPGSTLQELRWAPDREHAVALVREMLEPGDVVL 516


>gi|193213410|ref|YP_001999363.1| FolC bifunctional protein [Chlorobaculum parvum NCIB 8327]
 gi|193086887|gb|ACF12163.1| FolC bifunctional protein [Chlorobaculum parvum NCIB 8327]
          Length = 433

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKR 399
              R E +  + +   + +D +H  + +   ++ +R +      + V+ G   D+D    
Sbjct: 287 YRARLEMLPGSPK---VMLDVSHNPDGMSRTVEALREVRGSFRSLRVLLGVAADKDA--- 340

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLN 457
             + +    +AD  +          PE   AE+    GI    E G+  E I       +
Sbjct: 341 AGIARQLASIADEVVAVPLPSTRSFPEAELAEVCRDAGIGRVEECGDAAEGIDLLFSHAD 400

Query: 458 KQDVLVVAG 466
             D+++V G
Sbjct: 401 GDDLILVTG 409


>gi|84686334|ref|ZP_01014228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665517|gb|EAQ11993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2654]
          Length = 466

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 138/419 (32%), Gaps = 57/419 (13%)

Query: 62  QAIAQGAEAIVVSSAYS------LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--H 113
           +A   G  A++ S           +  +   ++  P+   ++   F     S  + +   
Sbjct: 62  EAFE-GVAALITSPGIPHLYPETNKHIARAYKAGIPV--DNDIGLFFRSLGSGAWDEMDQ 118

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++AVTG++GKS+ ++ +  I + +G  +   G         +         + L   
Sbjct: 119 PPRVVAVTGSNGKSTTSALIHHILKVAGKPAQLAGNIGRGVLDIEPPIDGEVIVLEL--- 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS+  D  R   +      FTNL  DH+D H     YF AK RL
Sbjct: 176 ----------------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGPGGYFAAKRRL 217

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F E  P  +       D      +      G     V        L     +   ++  +
Sbjct: 218 FAEGGPDRAVV---GVDEPEGLFLAGQLAMGPGDDRVIRVSVDEKLTGPGWLVYARKGFL 274

Query: 294 SVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           S   K       D   +  LPG     NA  A  +C  +G+   ++ +       +P R 
Sbjct: 275 SETRKGKQVGSIDLRTIASLPGTHNHQNACCAYAVCRTLGLSPKVIEQAFHSFAGLPHRS 334

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           + V        +    A   ++  M L   R I   R IV    GG + +G    + +  
Sbjct: 335 QLVAEAGGVRYVNDSKATNVDAALMALLAFRNI---RWIV----GGLQKEGGLSGLAEGL 387

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++A   ++        + E    ++  G            A+  A+      D +++A
Sbjct: 388 PNVAKAYVI------GREAEAFARDL--GAVEAQVCTTMEAAVAAAMADAQSGDTVLLA 438


>gi|319900367|ref|YP_004160095.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides helcogenes P
           36-108]
 gi|319415398|gb|ADV42509.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides helcogenes P
           36-108]
          Length = 480

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 116/367 (31%), Gaps = 41/367 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +A
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLLHQSHVGCTAF-LGGISKNYGTNLLLSQSSPYTVIEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             +  S                      +       T    DH+D + T++AY  +    
Sbjct: 170 DEFDRSFHW-------------------LSPWMSVITATDADHLDIYGTKEAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              + P  +  I    +      ++     G    +        H + +     +  +  
Sbjct: 211 TTLIRPGGALIIHKGLE------LQPDVQPGVTTYTYSRNEGDFHAENIRIGGGEIFIDF 264

Query: 294 -SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            + + +  D    +P    + N + A  L    G     +   +     V  RF+F    
Sbjct: 265 VAPDTRINDVRLGVPVGINIENGIAAMALAHLSGATDEEIKRGMASFRGVDRRFDF-KLK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-- 410
           +       DYAH    +   +K+IR +   + I          +  R      A  L+  
Sbjct: 324 TDETVFLSDYAHHPAEIAQSVKSIRELYQDKKITAIFQPHLYTRT-RDFYKDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  I+T+  P  E P      + I   +  GI   I    R E I   +      +VL+V
Sbjct: 383 DEVILTEIYPAREQPIPGVSSKLIYDNLRPGIEKCIC---RKEDILKLLAE-KHIEVLIV 438

Query: 465 AGKGHET 471
            G G   
Sbjct: 439 LGAGDMD 445


>gi|160900204|ref|YP_001565786.1| FolC bifunctional protein [Delftia acidovorans SPH-1]
 gi|160365788|gb|ABX37401.1| FolC bifunctional protein [Delftia acidovorans SPH-1]
 gi|222838349|gb|EEE76714.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 123/392 (31%), Gaps = 35/392 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN--- 160
             A RL  +    ++ V GT+GK S  + ++ +  +SG           +    +     
Sbjct: 32  EVAQRLDLRFDCPVITVAGTNGKGSTCAMLEAVALQSGFRPGVYTSPHLVHFEERCRVGG 91

Query: 161 -------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGS 208
                   L     +  A+      +      +  A    + Q RLD   L         
Sbjct: 92  EIVKAAELLPHFEAVEQARVQGTEVALTYFEFTTLAILRLMSQSRLDVAILEVGLGGRLD 151

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAG 264
            TN+         +        +    E + +E   I+ A                 +A 
Sbjct: 152 ATNVIDADCAVITSIDIDHVEFLGPDRESIGREKAGIMRAGRPVVVSDPMPPQSVLDHAQ 211

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                +   G+  +                  G  +  L           AL A     +
Sbjct: 212 AIGADLWRLGQDFNFSGDKQQWGWAGRGRRYAGLAYPALRGANQLVNASGALAALEAIRS 271

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGR 383
               +A  +     +  +PGRF+ +        + +D AH  +S+  +  N+  +     
Sbjct: 272 RLPVTAQAVRTGLAMVELPGRFQIIPGQPT---LVLDVAHNPHSVAALTANLDAMGYFPC 328

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH-----GIP 437
              VFG   D+D    P++G+IA  L D   +TD   PR+E  E +R +I       G+P
Sbjct: 329 THAVFGAMHDKDLA--PMLGRIA-PLIDRWYLTDLPTPRAESAEVLRQKIEALPPAPGVP 385

Query: 438 G---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    N   A+  A+      D +VV G
Sbjct: 386 RELSVATFANPQLALDAAVLAAGPTDRIVVFG 417


>gi|86140622|ref|ZP_01059181.1| UDP-N-acetylmuramate--L-alanine ligase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832564|gb|EAQ51013.1| UDP-N-acetylmuramate--L-alanine ligase [Leeuwenhoekiella blandensis
           MED217]
          Length = 449

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 56/179 (31%), Gaps = 8/179 (4%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                +   +      +       +  +  LPG   + NA  A  + +  G  +  + + 
Sbjct: 241 YAALNIKIENGAYHFDLKHPDGLIEDLVLNLPGRHNLSNATTALAMALHYGCPADKLAKA 300

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     V  RF           +  DYAH    +  +   +R +   + ++         
Sbjct: 301 LFAFKGVNRRF-TYRIKKANEVLIDDYAHHPAEINAVHSAVREMYPNKRVLAVFQPHLFS 359

Query: 396 QGKRPIMGKIALDLA--DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +  R  M   A  LA  D  ++ D  P  E+P     ++       +    R E I  A
Sbjct: 360 RT-RDFMEDFAASLAQFDELLLLDIYPAREEP---IEDVTSEKLLELIPLTRKEVISKA 414


>gi|260599417|ref|YP_003211988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cronobacter turicensis z3032]
 gi|260218594|emb|CBA33861.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 459

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVVAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYAPRTLVLNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +   ++   G                      
Sbjct: 208 VRIVPGQGKIIWPENDINLKQVLAMGCWSEQEQLGEQGRWQAKKLTNDASKWEVWLDGEC 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +     + L GE  + N L A      +G+  A   + L        R E  G  +
Sbjct: 268 VGQVE-----WQLVGEHNMQNGLAAIAAARHVGVTPADAAQALGSFVNARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGVCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +   +     P ++       I       +    +   ++     D ++V
Sbjct: 377 SLGRADEVFLFQPHH---IPWQVAEVADACIQPAHWSADIDTLVEMIVKTAQPGDHILV 432


>gi|259907896|ref|YP_002648252.1| FolC bifunctional protein [Erwinia pyrifoliae Ep1/96]
 gi|224963518|emb|CAX55008.1| FolC bifunctional protein [Erwinia pyrifoliae Ep1/96]
 gi|283477772|emb|CAY73688.1| dihydrofolate:folylpolyglutamate synthetase [Erwinia pyrifoliae DSM
           12163]
          Length = 420

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 100/380 (26%), Gaps = 34/380 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+         ++ V GT+GK +    ++ +   +G           +    +      
Sbjct: 37  AAALDLLTPAPVVITVAGTNGKGTTCRTLETVLLAAGYRVGVYSSPHLVRYTERVRVQGA 96

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   A       G    S+       +   L  + L      ++    +       
Sbjct: 97  ELAETAHTASFAAIEAGRAATSLTY----FEFGTLSALWLFKQVQLDVVILEVGLGGRLD 152

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-- 282
           A       +                D  S    K       +   VG       +  V  
Sbjct: 153 ATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRQGKPAVVGEPDMPGTIADVAA 212

Query: 283 ------CAIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                           +  +   F          PLP       A   A L  +      
Sbjct: 213 EKGAQLNQRDRDWSYQVDGDSWSFHDASGSIEHLPLPQVPVPNAATALAALRASTLKVDE 272

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFG 389
             +       ++PGRF+ V  + +   + +D AH  ++   +   +  I  G ++  V G
Sbjct: 273 ATIRRSLHQALLPGRFQRVSESPQ---VILDVAHNPHAASYLAGRLAEIKCGAKVHAVVG 329

Query: 390 CGGDRDQGKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
              D+D       G +A      D       + PR        A++   +       +  
Sbjct: 330 MLHDKDIA-----GTLAYLAPQVDYWYCAPLEGPRG----ASAAQLAAHLNAAQSFASVT 380

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
            A   A+     QD+++V G
Sbjct: 381 AAWHRALTQAEPQDIVLVCG 400


>gi|302876578|ref|YP_003845211.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307687253|ref|ZP_07629699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302579435|gb|ADL53447.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 458

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 122/410 (29%), Gaps = 56/410 (13%)

Query: 67  GAEAIVVSSAYSLQDF-------SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           GA+ ++     S  D         +    +  +L       +++          P  I A
Sbjct: 62  GAKLVLGEDYLSYLDGFEVVFKTPSMRIDSPALLKCKEQGAYITSEMEEFIRYCPGKIFA 121

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG+ GK++  + V +I +  G +++  G   T      +    T   +           
Sbjct: 122 ITGSDGKTTTTTLVYEILKTEGYNTWVGGNIGTPLFTKIEEIKNTDKVV----------- 170

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  +E SS  L       + +   + TNL  +H+D H++   Y  AK  +F+    
Sbjct: 171 -------LELSSFQL---MTIQLPIEVSAVTNLSPNHLDMHKSMNEYIEAKENIFKFQRE 220

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            +   +   +D               +  +      F    +V      ++  + +  K+
Sbjct: 221 NDLLVLNIEND----------ITYNMKDKANSRINFFSSKTEVPQGAYFKENKLYLRDKE 270

Query: 300 FDFLFP-LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  +         L+ A L          + +       V  R EF+         
Sbjct: 271 VCKKEELVLMGMHNVENLLTAFLVTNEDASIESMKKVATTFSGVQHRSEFIREIDGVKYY 330

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI---V 415
               A +       LK        R +++   G D+      +  +   +     I   V
Sbjct: 331 NDSIATSPTRAVASLKAFD-----RKVILIAGGYDKHIPFEYL-AEEGHEKIKKLILLGV 384

Query: 416 TDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVL 462
           T      E  + +  ++I                EA   A E+  + D++
Sbjct: 385 T-----KEKIKDVFDKVIKEKTLDLPIYIVQTLEEAAYKAKEIAEEGDIV 429


>gi|227512223|ref|ZP_03942272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
 gi|227084617|gb|EEI19929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
          Length = 460

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 128/364 (35%), Gaps = 45/364 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+++       I+ VTG++GK++  + + +I              +   S  +    +
Sbjct: 104 ELAAQMTD---AEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGNIGVSATETALKS 160

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T                    + +E SS  L    +  +       TN+  +H+DYH+T+
Sbjct: 161 TAD----------------DTIVMELSSFMLL--GIKKLHPHVAVLTNIFSNHLDYHKTR 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y NAKMR+     P +   + +  D + + + KR+              +  + K   
Sbjct: 203 KNYVNAKMRITMNQTPDDFFVVNFDSDEWRQ-LSKRSRAQVVPFARTSEIDRGAYEKNGK 261

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +N + +  + + K       +PG+  V NAL A      +G  +  +   LE    V 
Sbjct: 262 LYYNDEFIMNADDIK-------VPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVR 314

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +FV             A     +E     +        IV+   G DR      ++ 
Sbjct: 315 HRVQFVLEADGRKFYNDSKAT---DIEATQIALEGFDH--PIVLLAGGLDRGYTFDKMVP 369

Query: 404 KIALDLADIAIV---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +        A++   T D    E  +K       G+    +  N  EA+  A    +  D
Sbjct: 370 QF-KQHVKAAVLFGQTAD-LLEESLQK------AGVKNITKVDNLDEAVPAAYHYSDSGD 421

Query: 461 VLVV 464
           ++++
Sbjct: 422 IILL 425


>gi|238855274|ref|ZP_04645593.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 269-3]
 gi|260664633|ref|ZP_05865485.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii SJ-7A-US]
 gi|282932433|ref|ZP_06337858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|313471909|ref|ZP_07812401.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 1153]
 gi|238832166|gb|EEQ24484.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 269-3]
 gi|239529167|gb|EEQ68168.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 1153]
 gi|260561698|gb|EEX27670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii SJ-7A-US]
 gi|281303382|gb|EFA95559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
          Length = 456

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 112/355 (31%), Gaps = 44/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++      +I        G  ++ +G      S               
Sbjct: 113 APFVCVTGSNGKTTTVMLTSEIIDHHLAKSGHHAYAVGNIGVPISEVV------------ 160

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                   +     + VE SS  L    +  IK    +  ++   H+DYH+T + Y  AK
Sbjct: 161 ------QKATKDDVLVVEISSFQLL--GVTDIKPKVAAIVDIYPTHLDYHKTMENYIAAK 212

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + +       E     +      + + +       ++ +                   Q 
Sbjct: 213 LNVTRFQTSDEYFIANF---DQKEILAQEQATTKAKIQTFSMNDHSASYFVGDEYLESQS 269

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I            LPG+  + N++VA  +   +G +++ +   L        R ++V 
Sbjct: 270 EKIMK-----IADIKLPGKHNLQNSMVAIAISKLMGAENSDIQAVLSTFAGARHRLQYVT 324

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T +         +    +  + +K           V+ G G DR     P++  +  +  
Sbjct: 325 TLNNVKIYNDSKSTNIEAATVAIKAFSEPE-----VLIGGGLDRGFTFDPLVP-LLKEHV 378

Query: 411 DIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++       E    +       GI          EA+ TA ++    DVL++
Sbjct: 379 KAVVL-----YGETRYLLADAARKAGIKEIKIVNTLKEAVPTAYKLTQPGDVLLL 428


>gi|225568660|ref|ZP_03777685.1| hypothetical protein CLOHYLEM_04738 [Clostridium hylemonae DSM
           15053]
 gi|225162588|gb|EEG75207.1| hypothetical protein CLOHYLEM_04738 [Clostridium hylemonae DSM
           15053]
          Length = 449

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 97/298 (32%), Gaps = 19/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I     ++            E SS  L+   +   +    +  N+  DH++ H T +AY 
Sbjct: 143 IGNPYTVAAGKMSEHAVAVAEMSSFQLES--IVSFRPAVSALLNITPDHLNRHHTMEAYI 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +      ++   + Y +D  ++E  K          S     + I+L     I+ 
Sbjct: 201 EAKKNIARNQTEEDWCILNY-EDEVTREFGKNVRAQVLYFSSRRKLERGIYLDDGRIIYR 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +        +       PG     N + AA +    G+    + E ++    V  R E
Sbjct: 260 NPEEICICHVDELQL----PGTHNHENIMAAAAMAAVYGVPVDKIRESVKAFKGVEHRIE 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++        R  V+ G G D+D      +     
Sbjct: 316 FVTEKNGVVYYNDSKGTNPDAAIKGIQA-----MNRKTVLIGGGYDKDSSYTEWIESFDG 370

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++          EKI  +    G   ++      EA+  + E+    + +++
Sbjct: 371 KVRKLILL------GATKEKIAKDAESCGFHDYVFADTFEEAVLMSAEIAGPGEAVLL 422


>gi|194290815|ref|YP_002006722.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224650|emb|CAQ70661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 519

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 93/305 (30%), Gaps = 37/305 (12%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              +E SS  L+      +   A +  N+ +DH+D+H + +AY  +K R+F         
Sbjct: 193 VWVLELSSFQLET--THTLAPHAATVLNVTQDHLDWHGSMEAYAASKARIFGPAGHACVQ 250

Query: 244 AIIYADD----------------------AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
            +   D                         S  +++        +       +     +
Sbjct: 251 VLNRNDRLTLDMARPGSTPVTFGIDLPEVPGSFGILREGGMPWLVLAEPDPDAEGEGKPR 310

Query: 282 VCAIHNKQQVTISVEGKDFDFL--FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                   Q  + V  K         + G     NA+ A  LC AI +    +L  L + 
Sbjct: 311 GRKAAEAVQEAVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPMNALLHGLREY 370

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
              P R E+V T                +    L  +      + +V+   G  + Q   
Sbjct: 371 RGEPHRVEWVATIDDVEYFDDSKGTNVGATVAALSGLD-----KRVVLIAGGEGKGQDFS 425

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           P+   +A   A   ++           ++R  +       ++     EA+  A  +    
Sbjct: 426 PLAAPVA-QYARAVVLI-----GRAAAELRDALQGSGATLVDAATLEEAVTQAAGLAEAG 479

Query: 460 DVLVV 464
           D +++
Sbjct: 480 DAVLL 484


>gi|168242491|ref|ZP_02667423.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194450439|ref|YP_002046421.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194408743|gb|ACF68962.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205338617|gb|EDZ25381.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 422

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 118/391 (30%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++   +S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTVSFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPA 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V        +   V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLLRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SRLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +  +A + AI+    +D ++V G
Sbjct: 376 N----VYDSVAQAWQAAIDAAQPEDTVLVCG 402


>gi|167746331|ref|ZP_02418458.1| hypothetical protein ANACAC_01040 [Anaerostipes caccae DSM 14662]
 gi|167654324|gb|EDR98453.1| hypothetical protein ANACAC_01040 [Anaerostipes caccae DSM 14662]
          Length = 425

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 140/410 (34%), Gaps = 48/410 (11%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           IL +DN R+ L+   +         I+ + GT+GK S  +F+  + +  G  + +    +
Sbjct: 19  ILGLDNIRELLNRLGNPQDRL---KIVHIAGTNGKGSTLAFLASVFKEQGYEAGRYVSPA 75

Query: 152 TISS---FAQDNRLTTPSPIYLAKAL-----SYLSSQGVTHVSVEASSHGLDQ------- 196
           +      F  ++ + T   +             +   G  H +V      L         
Sbjct: 76  SFCYEEKFRINDEIITKEDLCFYMEKIKKTAEEMVRDGKEHPTVFEMETALSFLYFLDKK 135

Query: 197 -----------HRLDGI----KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                       RLD        I     ++G DH  Y  +              +L K 
Sbjct: 136 VDAVLLETGLGGRLDATNVIKHPICTVIASIGYDHTQYLGS---TIQEIAGEKAGILKKG 192

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
            PA+ Y + + ++EV+++A       L      +   L +     +      +   +  +
Sbjct: 193 CPAVSYDNTSEAREVIEKAAEEKNVPLIFADTSRVTILSE-NLEGSVFSYVCADGTEYRN 251

Query: 302 FLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               + GE Q++NA  A     +     I     +    K     GR + +         
Sbjct: 252 MEIGMLGEHQIFNAAAALETIQILKKSYIFRQDSIRKGFKKARWDGRLQRISAVPAAFC- 310

Query: 359 YVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VT 416
             D AH  +  + +L+ + +  T+ +II + G   D+D    P M +I   ++D    VT
Sbjct: 311 --DGAHNPDGAQKLLQFLQKNFTNKKIIYIMGVLSDKDY---PQMLEIMSSMSDEIYTVT 365

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +  R+     +            E G+  E  +   +   + DV+VV G
Sbjct: 366 PEGDRALPSGVLAEAARPFYRKVTEGGSLGECYQQVKKECGQDDVIVVFG 415


>gi|320354033|ref|YP_004195372.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122535|gb|ADW18081.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 482

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 20/279 (7%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
              +      T++  DH D      A   +       + P+   A++   D      + +
Sbjct: 190 QHYRPHCTILTSVEFDHADIFADLAAIKASFAEFIGRIPPQG--ALVAHLDDPVVAELAK 247

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                      G   ++  +         +   +           P+PG     NAL   
Sbjct: 248 VALCPVIGYGRGSGCEWRVVDLQVRGLASEFTVVHRGQPLGRCRLPMPGVHNCLNALAVI 307

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L   +G     +++ L     V  R +  G   RG  +  D+AH   ++   L+ +R  
Sbjct: 308 ALLSHLGFAFETIVQGLASFEGVKRRQQVRGV-VRGITVVDDFAHHPTAVRETLQALRLA 366

Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGK---IALDLADIAIVTDDNPRSEDP-------EKI 428
               R++VVF    +    +R +  +        AD  ++ +  P    P        ++
Sbjct: 367 WPDTRLVVVFEPRTN--SSRRAVFQQDYATVFGSADQVLIREHVPLETVPISEQFSSGQL 424

Query: 429 RAEI-IHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVA 465
            A++ + GI          EAI  A+       DV+V+ 
Sbjct: 425 AADLALRGIQAHAYTDT--EAILDALARQCQPGDVVVIL 461


>gi|194477145|ref|YP_002049324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
 gi|171192152|gb|ACB43114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
          Length = 457

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 113/355 (31%), Gaps = 30/355 (8%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +               +A+TGT+GK++V   V  +   +GL +   G             
Sbjct: 96  MGEMVLAWEVLGKIPWIAITGTNGKTTVTHLVNHLLSYAGLEAPMCGNIG---------- 145

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
               S   LA +LS         + VE SS+ ++   +  I+     +T L  DH++ H 
Sbjct: 146 ---FSATDLALSLSKKKINIPDWLIVELSSYQIESAPV--IRPNIVLWTTLTPDHLERHN 200

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T   Y + K  L E    +   A                       +S   Q       K
Sbjct: 201 TLFNYRSIKSSLVENSNYQILNA------DDLDLSSSAGSWPNANWVSTDLQFALSKNIK 254

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                    VT           F L G     N L+AA + + I +   ++ E       
Sbjct: 255 PVLWIADGYVTNQDGPIFSADGFNLVGVHNQQNLLMAAAVGLKISLSPKIISEAFRCFPG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           VP R + + +           A   ++ E+ +K +        I+V   G  +       
Sbjct: 315 VPHRLDLIRSYKGIHFYNDSKATNYDAAEVAIKAVEG-----PIIVLAGGQTKKGEANGW 369

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           + ++      + +   D    E  + +     + I G     +  EA+  ++++ 
Sbjct: 370 ISQLKAKAKAVVLFGQD---KEQLKSLLQS-SNYIGGIHCCSSLKEAVPLSLQLA 420


>gi|160943837|ref|ZP_02091068.1| hypothetical protein FAEPRAM212_01336 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445011|gb|EDP22014.1| hypothetical protein FAEPRAM212_01336 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104060|emb|CBL01604.1| folylpolyglutamate synthase/dihydrofolate synthase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 424

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 316 LVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           + A  +    G +     +    +    PGRFE +  +       +D +H ++ +   ++
Sbjct: 260 ITALRVLRQQGWNIPESAIRAGLEQVSWPGRFELLRHSPA---FVLDGSHNAHGMRATVQ 316

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEI 432
           +++      + + +     D+D      M  +   LA+  + VT  NPR+   + +   I
Sbjct: 317 SLKDRFPGQKFVFLVSIMADKDVD---EMLALLAPLAERFVTVTAHNPRAMPAQTLAEHI 373

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                      +    +  A E+  + 
Sbjct: 374 RAYGCTAEAADSIEAGVARAEELGGEG 400


>gi|298507099|gb|ADI85822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens KN400]
          Length = 452

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 137/413 (33%), Gaps = 56/413 (13%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLY 110
           + D   F        AE +VVS     +     A  ++   ++            ASR  
Sbjct: 60  RHDEADFAA------AETVVVSPGVPQESPYLQAARQAGREVI-------TEIELASRFI 106

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++A+TGT+GK++  +   ++    G  +F  G             +TT + +  
Sbjct: 107 TAP---LVAITGTNGKTTTTTLTGELFAGCGFRTFVGGNIGNPLIEL----VTTGAAVD- 158

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                         V VE SS  L+  R    +       N+  DH+D + T Q Y +AK
Sbjct: 159 -------------RVVVEISSFQLEWIR--SFRPTVAVLLNITEDHLDRYATYQEYIDAK 203

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
            R+FE     +  A++  DD     +  R   A   +       + I  +    I     
Sbjct: 204 ARIFENQTASDW-AVLNVDDPIVAGLTGRTRAAVFPMSRQRELAEGIFYRDGVIIFRHAG 262

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                    F     + G   + N + +    + +G D+   L  +E    +P R E V 
Sbjct: 263 RQERFPTDRF----RITGVHNIENIMASLAAALLLGCDADRALACVEAFGGLPHRMELVR 318

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                       A    S+E  L +         I +   G D+     P+ G +A  + 
Sbjct: 319 ELDGVRYFEDSKATNVGSVEKALASFND------ITLIAGGKDKGGSYAPLAGLVAERVR 372

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            + ++       E  +++  E +  +          +A+  A  +     V++
Sbjct: 373 HMILI------GEAKDRMARE-LGHLTDTRMTVTLEDAVELAASLTQPGGVVL 418


>gi|255014001|ref|ZP_05286127.1| folylpolyglutamate synthase [Bacteroides sp. 2_1_7]
          Length = 439

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 107/383 (27%), Gaps = 33/383 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSP 167
                 + V GT+GK SV+  +  I ++SG           +           +++    
Sbjct: 43  HKAYKTIHVAGTNGKGSVSHLLAAILRQSGFKVGLYTSPHLVDFRERIRVNGKKISQDYV 102

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHR-------------------LDGIKLIAGS 208
           +   +                 SS   +  R                    + I  I   
Sbjct: 103 VDFVERHRSFFEPLHPSFFELTSSMAFEYFRDQQVDYAVIEVGLGGRLDSTNIITPILSI 162

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH  +    +    A+     +     +        +       +A   G    
Sbjct: 163 ITNISLDHTQFLGDTEEKIAAEKAGIIKK-GVPALLGEAEKQSVYDVFKNKAEEVGAPFY 221

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                       ++         ++       +      +     V +A+      + + 
Sbjct: 222 YAQRMDMVKDECRLTVGGKWFFPSVEYGEIQGELGGEVQVRNAVTVLSAIHILRTELGVD 281

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRI 384
           I    V E    +  + G      T      +  D  H     E + ++++      G+I
Sbjct: 282 IIPEAVHEGFAHVTKLTGLMGRWQTLRSKPTVICDTGHNVGGWEHLAEHLKVLRQYCGQI 341

Query: 385 IVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            ++ G   D+D      +M + A      A V    P  ED       + HG+ G +   
Sbjct: 342 YMIIGMVNDKDIDGVLSLMPQDAFYFFTQASVERAMPV-EDFA--VKAMRHGLSGTL-CD 397

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
              +A+  A+    + D++ + G
Sbjct: 398 TVQDAVEKALRRARENDLIFIGG 420


>gi|160895313|ref|ZP_02076084.1| hypothetical protein CLOL250_02872 [Clostridium sp. L2-50]
 gi|156863006|gb|EDO56437.1| hypothetical protein CLOL250_02872 [Clostridium sp. L2-50]
          Length = 449

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/398 (13%), Positives = 106/398 (26%), Gaps = 47/398 (11%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           +  +N    L    +    +    ++ + GT+GK S A  +  I   +G           
Sbjct: 20  IGTENLASLLERLGN---PQDKSKVIHIAGTNGKGSTAKALATILMHAGFHVGLFTSPHL 76

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ---------------- 196
           +S   +                     +                                
Sbjct: 77  VSINERIRYDDEMISDEDFTWAFEQVRKKFIVHPSFFEVMFAMAAVYYEKKQPDYVIYET 136

Query: 197 ---HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
               RLD   ++      +    +D+ +               ++    P + +  DA S
Sbjct: 137 GMGGRLDATNVVRPELCIITSVGLDHMEYLGDTIAKIAGEKAGIIKPSVPVVYFKRDAVS 196

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +++              +     + ++                D   +          
Sbjct: 197 SGIIE-TCAKELDSAVTAVEKSNYIINEIDDKTIDFSFHNRYYNYDHLRIPKTSLYQVEN 255

Query: 314 NALVAAGLCIAIGID-------------SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
             L  A   I + I                  +          GR E +  +     ++V
Sbjct: 256 TCLAVASFDILMQIRDMEYEKNAGADVRIEQAVRSGLLDFSWEGRMEEIAPD-----LFV 310

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-DIAIVTD- 417
           D AH   ++E   + +RT  T  + I+VF    D+D     ++  +  +L+ +  IVT  
Sbjct: 311 DGAHNPEAVECYCRTLRTLYTKKKKILVFAAVKDKDYD--TMIRDLTEELSFEKIIVTSV 368

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIE 454
           DN R      I           +E   +  EA+  AI 
Sbjct: 369 DNKRKAPVALIADRFRKYTGHAVEAYEDIAEAMNAAIR 406


>gi|325203780|gb|ADY99233.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis M01-240355]
          Length = 424

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 125/393 (31%), Gaps = 37/393 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    R+  +    ++ V GT+GK SV +++ QI +++G  +  +     +    +    
Sbjct: 28  SEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKTGTLTSPHLLRYNERIAIN 87

Query: 163 TTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
             P                   I L        +     +  +     L+     RLD +
Sbjct: 88  AEPVSDDTIIASFERIEAARSEISLTYFEFNTLAAVDIFMREQVDVMILEVGLGGRLDAV 147

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G    +    +D+          ++   +  + +     I   +   + ++  A  
Sbjct: 148 NAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGMFRSGKPAICGQNPAPESLLSHAEA 206

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G ++L V  +    H  +    + + +   S +        P P     Y    AA   
Sbjct: 207 IGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDDPARNRNALPFPALRGTYQLSNAACTL 265

Query: 323 IAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +   +A +   +        L   PGRF+ +          +D  H  ++   + +++
Sbjct: 266 TVLECLNAKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRRSL 322

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
             +    +   VF    D+D      + +   D  D   +   D PR    E ++ ++  
Sbjct: 323 INLAFAQKRTAVFSMLSDKDIDG---VLETVKDQFDEWYIAPLDVPRGMTLESLQNKLHE 379

Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I          EA R A     + D +VV G
Sbjct: 380 HSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|254480262|ref|ZP_05093510.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2148]
 gi|214039824|gb|EEB80483.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2148]
          Length = 478

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 129/429 (30%), Gaps = 51/429 (11%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           GH     A   G A+ +V SSA    +          I VV    + L+      +G   
Sbjct: 67  GHR----AANVGTADVVVSSSAVDESNAEVVAAREARIPVVPRA-EMLAELMRYRHG--- 118

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +AV GT GK++  S +  +   +G   +F IG              +        ++
Sbjct: 119 ---IAVAGTHGKTTTTSLIANVFGEAGLDPTFVIGGLVNSVGSNAQLGASRFLIAEADES 175

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +                          ++ +    TN+  DH+D +    A        
Sbjct: 176 DASFLH----------------------LQPMVTVVTNIEADHMDTYGGDFAVLRRTFLE 213

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++  DD   +E++                     +  +         TI
Sbjct: 214 FLHNLPFYGVAVLCIDDPVIRELLPEVSRQVVTYGFADDADF--RISNMQRDGLTTGFTI 271

Query: 294 SVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +       +PG   V NA     +    G++   +   L     V  RF  +G  
Sbjct: 272 NRPSNEPLPVTLNMPGLHNVLNAAATVAVACDEGLEDEAIQSGLAGFAGVGRRFTRMGEL 331

Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIAL 407
           +  G       DY H    +   L + R     + +V+        + +        +  
Sbjct: 332 NLPGGTALLVDDYGHHPTEVRATLDSARQAWPEQRVVMVYQPHRYSRTRDLYDDFVSVLS 391

Query: 408 DLADIAIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D+ I+ +     E      D   +   I   G    I   N  +  +    ++ + D
Sbjct: 392 R-CDVLILLEVYAAGEEAIPGADSRSLARSIRQRGQLEPIFVENIEDVPQILCSVVEQGD 450

Query: 461 VLVVAGKGH 469
           V+V  G G+
Sbjct: 451 VVVTQGAGN 459


>gi|322617111|gb|EFY14017.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322617584|gb|EFY14483.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624787|gb|EFY21616.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322630337|gb|EFY27107.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322634517|gb|EFY31250.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322639228|gb|EFY35920.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640091|gb|EFY36758.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645690|gb|EFY42214.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322652054|gb|EFY48417.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656226|gb|EFY52523.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322659378|gb|EFY55625.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665838|gb|EFY62021.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669924|gb|EFY66065.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673909|gb|EFY70006.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678668|gb|EFY74724.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322683538|gb|EFY79552.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687613|gb|EFY83583.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193553|gb|EFZ78758.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198460|gb|EFZ83562.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323204572|gb|EFZ89575.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208490|gb|EFZ93429.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323213628|gb|EFZ98417.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218337|gb|EGA03047.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323220109|gb|EGA04575.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224517|gb|EGA08799.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323232332|gb|EGA16435.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235635|gb|EGA19719.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323241206|gb|EGA25242.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323244948|gb|EGA28950.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323250067|gb|EGA33961.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323253851|gb|EGA37676.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323254988|gb|EGA38779.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323259826|gb|EGA43458.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264154|gb|EGA47661.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270852|gb|EGA54290.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 422

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +   GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A + AI+
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGN----VYDSVAQAWQAAID 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 AAQPEDTVLVCG 402


>gi|168817897|ref|ZP_02829897.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205345122|gb|EDZ31886.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086800|emb|CBY96572.1| dihydrofolate:folylpolyglutamate synthetase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 422

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +   GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A + AI+
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGN----VYDSVAQAWQAAID 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 AAQPEDTVLVCG 402


>gi|200387300|ref|ZP_03213912.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604398|gb|EDZ02943.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 422

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +   GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A + AI+
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGN----VYDSVAQAWQAAID 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 AAQPEDTVLVCG 402


>gi|168465923|ref|ZP_02699793.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195631249|gb|EDX49809.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 422

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +   GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A + AI+
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGN----VYDSVAQAWQAAID 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 AAQPEDTVLVCG 402


>gi|194445868|ref|YP_002041629.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404531|gb|ACF64753.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 422

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +   GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A + AI+
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGN----VYDSVAQAWQAAID 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 AAQPEDTVLVCG 402


>gi|197119712|ref|YP_002140139.1| folylpolyglutamate synthetase [Geobacter bemidjiensis Bem]
 gi|197089072|gb|ACH40343.1| folylpolyglutamate synthetase [Geobacter bemidjiensis Bem]
          Length = 424

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 7/139 (5%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
               +         PGR E         R+ +D AH       + + +  +   R+ +V 
Sbjct: 270 PPQAMAAGMARAFWPGRMELFPG---PPRVLLDGAHNPAGANALAEALAEVPRARLFMVV 326

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
           G  GD++ G   I+G +   +AD    VT    R+   E+I    +       E G+  +
Sbjct: 327 GVMGDKELGG--ILGPLL-PMADQVFCVTPALERALPAEEIARFCLAAGVPAQEAGSVTQ 383

Query: 448 AIRTAIEMLNKQDVLVVAG 466
            ++ A      +D+++V G
Sbjct: 384 GVQQAQSAAADEDLILVCG 402


>gi|16761290|ref|NP_456907.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29141014|ref|NP_804356.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|197249666|ref|YP_002147326.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|213021481|ref|ZP_03335928.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
 gi|213161331|ref|ZP_03347041.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426980|ref|ZP_03359730.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213585062|ref|ZP_03366888.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213646798|ref|ZP_03376851.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213852686|ref|ZP_03382218.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|289827484|ref|ZP_06546096.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25293645|pir||AC0802 dihydrofolate synthase (EC 6.3.2.12) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503589|emb|CAD07597.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136639|gb|AAO68205.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|197213369|gb|ACH50766.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 422

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +   GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A + AI+
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGN----VYDSVAQAWQAAID 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 AAQPEDTVLVCG 402


>gi|288929761|ref|ZP_06423604.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288328862|gb|EFC67450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 443

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 116/362 (32%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++  S +  I + +G +    G               
Sbjct: 94  EFAARYTD---AKMVCITGSNGKTTTTSLIYHIFKAAGYNVGLGGNIGR----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  L+   +   K       N+  DH+D +   
Sbjct: 140 ---SLALQV-----AEGAHEWYVIELSSFQLE--NMYRFKAHIAVLLNITPDHLDRYNYC 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        + L  +   I +ADD   K  +++   +         +          
Sbjct: 190 MQGYVDAKMRILQNLGPQDYFIYWADDPVVKPELQKYDVSARVCPFAENRETGAAAYVAD 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                       E         LPG+  +YN+L AA    A GI   +V + L     V 
Sbjct: 250 GQITLPAPL---EFNMPQARLSLPGKHNLYNSLAAALAARAAGIPQNVVEQGLSDFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   ++    L+ +         ++   G D+     PI  
Sbjct: 307 HRMERVATMHGVNYINDSKATNVDACRYALEAMTA-----PTILIIGGKDKGNDYEPIKD 361

Query: 404 KIALDLADIAIVTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +    A +  +  DN +  ++ + +      G+P   +  +  E +     M      +
Sbjct: 362 LVKEKCAALVYLGADNTKLHQNFDHL------GLP-VADTHSMKECLTACAGMAKAGYTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|260913057|ref|ZP_05919539.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632644|gb|EEX50813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pasteurella dagmatis ATCC 43325]
          Length = 456

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 72/236 (30%), Gaps = 7/236 (2%)

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     + +  PA         +  +K     GC               +     +    
Sbjct: 204 QRQFHHMIRTIPANGRILSVADEANVKATLEMGCWSEKQFLGSDKEWHAERLRNDSTVFA 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K  +  + + G+  ++NAL+A      +G+      E L        R E  G 
Sbjct: 264 VFHNGEKVAEVHWNVVGQHNMHNALMAIAAAHHVGVSIQDACEALSTFVSPKRRLEVKG- 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQ-GKRPIMGKIALD 408
              G  +Y D+AH    +   L  +R    G  RI+ V     +  + G        AL 
Sbjct: 323 EVNGVTVYDDFAHHPAEILATLTALRDKVGGGARILAVLEPRSNTMKMGIHKDEIAPALG 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +        D   I ++    +   +   N  + +   +     +D ++V
Sbjct: 383 RADHVFIFQPENIGWDVVDIVSD---CVQPAVWNMNLDKLVDLIVSEAKPKDHILV 435


>gi|260769067|ref|ZP_05878001.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           furnissii CIP 102972]
 gi|260617097|gb|EEX42282.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           furnissii CIP 102972]
          Length = 422

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 101/368 (27%), Gaps = 22/368 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +        P    
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLEAGYSVGVYSSPHLIRYNERVRINGQDVPDEQH 105

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    +++       +   L  +++      ++    +       A      
Sbjct: 106 TQAFDFVEQQRGDITLSL----FEFGTLAALRIFQTEQVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +                D       K       +    G          H   + A  +
Sbjct: 162 DVSVITSLAIDHVDWLGSDINVIGFEKAGIYRSGKPAICGQPKPPATVAAHADDIGAEFH 221

Query: 288 KQQVTI--------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +  +            + +   F         +     A  L         +   ++   
Sbjct: 222 QVGIQFTYDKVSETRWQWRRGSFELTDLPLPTLPLPNAATALMALGCSGLEISDVNIVDG 281

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGK 398
                    +   S    I +D AH  +S E ++  ++    G+ + +V G   D+D   
Sbjct: 282 LKKATLAGRMQKISDAPTILLDVAHNPHSAEYLVSQLKLRFPGQSVHLVVGMLHDKDVKS 341

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              + K  +     A +    PR+   E++   +      +    N + A   A+     
Sbjct: 342 TLAILKPVVKQWYPASL--SGPRAASAEELCQYLEASQMRY---ANPVAAFEAALTQAQA 396

Query: 459 QDVLVVAG 466
            DV+VVAG
Sbjct: 397 DDVIVVAG 404


>gi|50122848|ref|YP_052015.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613374|emb|CAG76825.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 463

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 105/359 (29%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSS--FQIGPTSTI--SSFAQDNRLTTPSPIY 169
              ++AV GT GK++ A  V  I +  G        G       S+   D+         
Sbjct: 102 DRWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              A     S+ V +                          NL  DH D     +A    
Sbjct: 162 YDCAFFDKRSKFVHY------------------CPRTLVLNNLEFDHADIFDDLKAIQ-- 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                   L +  P         +   +K+    GC         + +   +  AI   Q
Sbjct: 202 ---KQFHHLVRLVPGSGKIILPTNDITLKQVMAMGCWSEQELVGEEGVWRAQKVAIDASQ 258

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                      +  + L GE  ++N L+A      +G+  A     L        R E  
Sbjct: 259 YQVYLNNELVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELR 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG--KIAL 407
           GT   G  +Y D+AH   ++   L  +R+   G    +      R    +  M   ++A 
Sbjct: 319 GTE-HGVTVYDDFAHHPTAILATLSALRSKVGGTAR-ILAVLEPRSNTMKLGMCKNELAP 376

Query: 408 DL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  AD   +      +  P ++       +       +    +   ++     D ++V
Sbjct: 377 SLGRADEVFLFQP---THIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHILV 432


>gi|86137681|ref|ZP_01056258.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. MED193]
 gi|85826016|gb|EAQ46214.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. MED193]
          Length = 470

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/313 (18%), Positives = 99/313 (31%), Gaps = 20/313 (6%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +    S         + VEA       +RL          TN+  +H+++        + 
Sbjct: 148 IHAYGSNARMGQGEWMVVEADESDGTFNRLPATI---AVVTNIDPEHMEHWGDFDRLRD- 203

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   +P    A+  +D A  + ++ R  +          Q        +       
Sbjct: 204 GFHEFVSNIPFYGVAVCCSDHAEVQALVGRITDRRVVTYGFNAQADV-RATNLTYKAGVA 262

Query: 290 QVTISVEGK---DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              I ++ +         P+PG+  V NAL A  +   +G+++  + E L     V  RF
Sbjct: 263 HFDIHLQAEGQVIEGCSLPMPGDHNVSNALSAVAVARHLGMNTNEIREALANFGGVNRRF 322

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI--IVVFGCGGDRDQGKRPIMGK 404
             VG    G  I  DY H    +  +LK  R   +      V+      R      +   
Sbjct: 323 TKVG-EVDGVTIIDDYGHHPVEIAAVLKAARQAIADTPGARVIAVHQPHRYSRLSDLFED 381

Query: 405 IALDL--ADIAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                  AD+  + +     EDP       + +   I HG        +  +  R   E 
Sbjct: 382 FCACFNEADVVAIAEVFAAGEDPISGASRDDLVAGMIRHGHRHARALLDEDDLERLVREQ 441

Query: 456 LNKQDVLVVAGKG 468
               D++V  G G
Sbjct: 442 ARPGDMVVCLGAG 454


>gi|300813304|ref|ZP_07093659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512575|gb|EFK39720.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 438

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/284 (17%), Positives = 100/284 (35%), Gaps = 18/284 (6%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +EASS  L+       K      T + +DH+D+H+T+  Y NAK ++F      
Sbjct: 146 NNDFIVIEASSFQLED--THEFKPKVALLTYVTKDHLDWHKTEDNYRNAKYKIFANQDKD 203

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I    D  S++ +K   +      +     +   L     I     +   +     
Sbjct: 204 DFSII--NYDDRSRDDLKDLKSNIYYFSTEKKDIRGCFLDDGKIIFKDGDIREEIIDIKD 261

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   V N + A  +     I + ++ + ++    V  R EFV   +       
Sbjct: 262 IK---IPGIHNVKNVMGAIIIAKIFNISNDIIKQSIKIFSGVEHRIEFVKKVNDVSFYND 318

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                 +S  + +K +         ++ G G D+      +M  IA +L  + +     P
Sbjct: 319 SKGTNPDSTLVAVKAMT-----NKTILIGGGYDKGSDFNSLMENIAPNLRSLIVFGQTGP 373

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 K+  E  +         +   A++  + +  K D +++
Sbjct: 374 ------KMAKEAKNYGIEVFIVKDLPAAVKLGVSLAKKGDSILL 411


>gi|317046895|ref|YP_004114543.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
 gi|316948512|gb|ADU67987.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
          Length = 438

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 131/404 (32%), Gaps = 66/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L   + +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIIASPGIALAHPALSEAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L K+ + L         +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLP-------------ALSLLKSPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TYSLKAAAATILNVTEDHMDRYPLGMQQYRAAK---LRIYENARVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +  V           + +G          +        + +  E         L 
Sbjct: 213 ADDGMTMPVRGADTRCVSFGIDIGDYH-------LNRQQGSTWLRVKGEKVLNTDEMKLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+ I  A  L+ L     +P RF+ V        I    A    
Sbjct: 266 GQHNYTNALAALALADAVNIPRASSLKALTTFTGLPHRFQLVHEAHGIRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR------ 421
           S E  L  ++    G + ++ G  G     K      +A        V  DN R      
Sbjct: 326 STEAALNGLQ--VKGTLWLLLGGDG-----KSADFSPLAR------YVQGDNVRLFCFGR 372

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +R EI              +A+          D++++
Sbjct: 373 DGDALAALRPEI------ATRTETLQQAMAQIASQAQAGDMVLL 410


>gi|184155814|ref|YP_001844154.1| folylpolyglutamate synthase [Lactobacillus fermentum IFO 3956]
 gi|227515592|ref|ZP_03945641.1| tetrahydrofolate synthase [Lactobacillus fermentum ATCC 14931]
 gi|183227158|dbj|BAG27674.1| folylpolyglutamate synthase [Lactobacillus fermentum IFO 3956]
 gi|227086022|gb|EEI21334.1| tetrahydrofolate synthase [Lactobacillus fermentum ATCC 14931]
          Length = 426

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 18/182 (9%)

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI----DSALVLEHLEKLHVVPGRFE 347
            + +  + F     L G +Q  N   A  +   +          +LE + +    PGR E
Sbjct: 237 KVKMGEEQFTCPCNLHGHYQTENLTTALAIVEQLRQGGVTIDQTMLEKVLQRVTFPGRME 296

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIA 406
                     + +D AH  ++ + ++  I+   + R + +V G   D+D  +   M  + 
Sbjct: 297 ---AIDHDPLVILDGAHNPDAAKQMVATIQEDFADRPVTMVLGFLADKDVER---MVTMY 350

Query: 407 LDLADIAIVTD-DNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +AD  I T  DN  R+ D   +   +     G     +  EA+  A E+     V++V
Sbjct: 351 QQVADHLIFTTPDNHGRAMDSWPLATAM-----GHEWAPDAREALELARELTPTNGVIIV 405

Query: 465 AG 466
            G
Sbjct: 406 TG 407


>gi|332686694|ref|YP_004456468.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC
           35311]
 gi|332370703|dbj|BAK21659.1| UDP-N-acetylmuramate--alanine ligase [Melissococcus plutonius ATCC
           35311]
          Length = 446

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 70/441 (15%), Positives = 121/441 (27%), Gaps = 86/441 (19%)

Query: 35  SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILV 94
            +S++I+ G I +A       G+ F                  + ++     +    ++ 
Sbjct: 59  FNSKNIKKGMIIIA-------GNAF----------------PDTNEELMQAKKLGNEVIR 95

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
             +   F+  F            +AVTG  GK+     +  +      +S+ IG      
Sbjct: 96  YHD---FIGQF------IQSYTSIAVTGAHGKTGTTGLLAHVLSGVKPTSYLIG------ 140

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                     P   + A          +++                         TN+  
Sbjct: 141 ---DGTGHGNPDAEFFAFEACEYQRHFLSYSP------------------DYAIMTNIDF 179

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH DY+ + +  ++A   L  ++                K + K   +       V    
Sbjct: 180 DHPDYYTSIEDVYSAFQSLANQVKKGIFAYG------DDKYLRKLNADVPIYYYGVNEND 233

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                                      F  P  G+  + NAL          +D   V  
Sbjct: 234 DIQAKNIQRTTKGSSFDVYYEGKFIGHFDLPAYGQHNILNALGVIAAAYFEELDMDEVAI 293

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-- 392
            ++    V  RF           I  DYAH    +   +   R     + IV        
Sbjct: 294 EMKTFKGVKRRFTEKQIG--DMIIIDDYAHHPTEISATIDGARQKYPNKEIVAVFQPHTF 351

Query: 393 DRDQGKRPIMGKIALDLADIAIV---------TDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            R        GK ALDLAD   +         T  N + ED   +  +I  G    I++ 
Sbjct: 352 TRTIALLDEFGK-ALDLADYVYLCDIFGSARETQGNVKIED---LGNKIKKG-GQVIKEE 406

Query: 444 NRIEAIRT---AIEMLNKQDV 461
           +  E +      I  +   DV
Sbjct: 407 DMSELLDYTDSVIMFMGAGDV 427


>gi|91791723|ref|YP_561374.1| UDP-N-acetylmuramate--alanine ligase [Shewanella denitrificans
           OS217]
 gi|123166539|sp|Q12SC5|MURC_SHEDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91713725|gb|ABE53651.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella denitrificans
           OS217]
          Length = 479

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 134/379 (35%), Gaps = 55/379 (14%)

Query: 31  NEVSSDS---RHIQAGWIFVA--IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           ++++++S   R I  G    A  I+G+  D            A+ +VVS+A + ++    
Sbjct: 50  SDIATNSVTDRLISLG----AKVIIGHHADSVEH--------ADVVVVSTAINHENPEII 97

Query: 86  IRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC-QRSGL 142
                 I +V   R+   L+      +G      +A+ GT GK++  S +  +  Q    
Sbjct: 98  AAKERRIPIV---RRAEMLAELMRYRHG------VAIAGTHGKTTTTSLIASVYAQAQRD 148

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +F IG    ++S   + RL T   +      S  S                       +
Sbjct: 149 PTFVIG--GLLNSAGTNARLGTSRYLIAEADESDASFLH--------------------L 186

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           + +    TN+  DH+D +             F   LP    A++  DD  ++E+M R   
Sbjct: 187 QPMVSVITNIEADHMDTYGGDFEKLKTTFVDFLHNLPFYGVAVMCIDDEINREIMPRVGR 246

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                                   ++  V    + +D   +  LPGE  V NAL A  + 
Sbjct: 247 QIVTYGFSQDADVQALNFNQIGHQSQFVVR-RKDKEDLALVLNLPGEHNVLNALAAIAVA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIRTI 379
               ID   +++ L +   +  RF+ +G  +       +  DY H  + +   +K  R  
Sbjct: 306 SEDDIDDESIVKALAEFEGIGRRFQHLGEFNTANGQVMLVDDYGHHPSEVLATIKAARAG 365

Query: 380 TSGRIIVVFGCGGDRDQGK 398
              + +V+        + +
Sbjct: 366 WPDKRLVMAYQPHRYSRTR 384


>gi|300114588|ref|YP_003761163.1| FolC bifunctional protein [Nitrosococcus watsonii C-113]
 gi|299540525|gb|ADJ28842.1| FolC bifunctional protein [Nitrosococcus watsonii C-113]
          Length = 423

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 108/394 (27%), Gaps = 35/394 (8%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +  +  ++    +    P  I+ + GT+GK S  + ++ I   +G           +  
Sbjct: 24  PSLIRASAVLQRMVLSTPPFPIVTIAGTNGKGSTVALLEAILLAAGYRVGSYTSPHLLRY 83

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA------------SSHGLDQHRLDGIK 203
             +           L              +S+                 GLD   L+   
Sbjct: 84  NERIKIQGEAVSDDLICQSFARIDSARREISLTYFEFGTLAAIDIFHQSGLDIALLEVGL 143

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N     +    T        +    E +  E   I  +         K   + 
Sbjct: 144 GGRLDAVNALDADVAVITTVDIDHVNFLGPDRESIGFEKAGIFRSHRPAICGDPKPPKSV 203

Query: 264 GCRVL----SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
             R       +   G+  H +      +               L           AL+A 
Sbjct: 204 PARAQELAAPLYRIGRDFHYRITGEGWSWWSDGSHYADLPHPALTGACQHQNGATALMAL 263

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L       S   +        +PGRF+     S       D AH  +    + +++   
Sbjct: 264 KLMSERLPVSETAIRGGLSAVRLPGRFQ---CFSGKVERIFDVAHNPHGARWLARSLTDR 320

Query: 380 TS-GRIIVVFGCGGDRDQG------KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
              G+   V G   D+D        +R I G     LA       D  R    + +  ++
Sbjct: 321 PCEGQTYAVLGMLADKDVTGVVGALERIIQGWFVGGLA------MD--RGLSGKALAGKM 372

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + +   I   + +EA + A+E     D ++V G
Sbjct: 373 GYHLNPAIY-PSVVEAYQAALETAQTGDRVLVFG 405


>gi|325680035|ref|ZP_08159603.1| bifunctional protein FolC [Ruminococcus albus 8]
 gi|324108272|gb|EGC02520.1| bifunctional protein FolC [Ruminococcus albus 8]
          Length = 421

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 7/125 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
             GRFE +        +  D AH  + +      I      +  ++ G   D++      
Sbjct: 286 WHGRFEILRREPY---VIFDGAHNPDGIRFAADTISRYFDKKAAILIGVMADKEYSLYAD 342

Query: 402 MGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           M        D A  V  DNPR+ D  K+                  + +R A     ++D
Sbjct: 343 M---LGCYIDKAFTVRPDNPRALDSGKLAEVFNGKGIEAESFEVLADGVRKAYSYAKEKD 399

Query: 461 VLVVA 465
           + ++A
Sbjct: 400 IPLIA 404


>gi|261493923|ref|ZP_05990432.1| tetrahydrofolate synthase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496867|ref|ZP_05993236.1| tetrahydrofolate synthase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307484|gb|EEY08818.1| tetrahydrofolate synthase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310426|gb|EEY11620.1| tetrahydrofolate synthase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 433

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 115/382 (30%), Gaps = 35/382 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSPIY 169
           K    ++ V GT+GK S    ++    ++G           I    +        P   +
Sbjct: 46  KPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPDADH 105

Query: 170 LAKALSYLSSQGVTHVSVEASS---------HGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           +       + +  +    E S+         + LD   L+         TN+   ++   
Sbjct: 106 VQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDPNLAVI 165

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +      A +    E + +E   I   +      + +       + ++        +  
Sbjct: 166 TSIDIDHVAFLGDNREDIGREKAGIFRENIPVV--IGEPDCPHSIKQIADSLNCHAFYRG 223

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           K      K  +      +      P+P           A L          ++       
Sbjct: 224 KDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKIIRQALNEA 283

Query: 341 VVPGRFEFVGTNSRGGRI--------YVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGC 390
            + GRF+ +                  +D  H  ++   +   +R +   + +I  VF  
Sbjct: 284 QMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPNQKIYAVFSA 343

Query: 391 GGDRDQGKRPIMGKIALDLADIA----IVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GN 444
             D+D         I   LA+I         D  R +  E + A++++ +P        N
Sbjct: 344 LEDKDLSG------IVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTACSYEN 397

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             +A R   E  N+ D+++V G
Sbjct: 398 VAQASRVLFETANENDIVLVFG 419


>gi|289422422|ref|ZP_06424265.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156994|gb|EFD05616.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus
           anaerobius 653-L]
          Length = 451

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 138/453 (30%), Gaps = 64/453 (14%)

Query: 47  VAI-VGNKEDGHL----F-IPQAIAQGAEAIVVSSA-----------------YSLQDFS 83
           + I  G K  G      + I    + GA+ ++                        ++F 
Sbjct: 19  ICINKGYKVTGSDMQDSYLIDHLRSLGAKVVIGQKKENITDDINMVIYTAAISNDNEEFQ 78

Query: 84  ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV-QQICQRSGL 142
           A    N  ++   N   FL            +N +AV+GT GK+S  S +          
Sbjct: 79  AAKEKNILMI---NRAAFLGQIMREY-----KNSIAVSGTHGKTSTTSMLSTIFNHAEKD 130

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +  +G   +          +        + +    +                       
Sbjct: 131 PTILVGGNLSTIGGNVRIGNSEHFITEACEYVDSFLNFN--------------------- 169

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   N+  DH+DY         A    F +LLP++   II  D   +K++      
Sbjct: 170 -PFISLVLNIEEDHLDYFSGLDEIK-ASFNKFGKLLPEDGFFIINGDSENTKDITFDVKA 227

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           +  R          I           +            F   + G   VYNA  A    
Sbjct: 228 SVIRFGQKDTNDAIISDISYDENGYARFNLKYKGAALGRFDLSIYGLHNVYNATAAIVAA 287

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           I   ID   + E +++   V  RFE  G   +G  +  DYAH    ++  L + + +   
Sbjct: 288 IVSNIDIDTIKEGIKEYKGVGRRFEKKG-EYKGALVIDDYAHHPTEIKATLASAKNLKKD 346

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE-DPEKIRAEII-----HG 435
           ++ VVF      R +       + A   AD  IV D     E DP  I ++++       
Sbjct: 347 KMWVVFQPHTYTRTKALFDEFSQ-AFHAADKVIVADIYAAREQDPGDINSKMLVESLYTN 405

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               I   +  +      E +   D+++  G G
Sbjct: 406 HVDAIYLPSFDDITNYLRENVGPNDMVITCGAG 438


>gi|269964685|ref|ZP_06178923.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio alginolyticus 40B]
 gi|269830584|gb|EEZ84805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio alginolyticus 40B]
          Length = 452

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 106/355 (29%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +    A  
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLE----AIK 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R F  L+       +       + +                        K+    +K  V
Sbjct: 202 RQFHHLVRTVPGNGLILAPKQDQALADVFERGCWTEKQFSGVDGDWQAHKLVLDGSKFDV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  + K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 AL-QDEKVGTVEWNLVGDHNVDNALMAIAAARHVGVTPDLACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ +  +R     + I+           +      +A  L  
Sbjct: 321 EQ-GVTVYDDFAHHPTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAESLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + I  +            +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQ---CTQPAFVDADIDNFVAKIVERARPGDQILV 431


>gi|311280932|ref|YP_003943163.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
 gi|308750127|gb|ADO49879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
          Length = 438

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 133/401 (33%), Gaps = 60/401 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALSHPSLSAAADAGVEIVGDIE--------LFCREAQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDVSREL--------------------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAAAATILNVTEDHMDRYPLGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCISFGINMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D    KR               +T DN R   
Sbjct: 326 STEAALNGL--HVDGTLWLLLGGDGKSADFAPLKR--------------YLTGDNIRLYC 369

Query: 425 PEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             +   E+    P          +A+R     +   D++++
Sbjct: 370 FGRDGDELAALRPEVSTLTETMEQAMRLIAPQVKPGDMVLL 410


>gi|156973107|ref|YP_001444014.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524701|gb|ABU69787.1| hypothetical protein VIBHAR_00786 [Vibrio harveyi ATCC BAA-1116]
          Length = 452

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 116/357 (32%), Gaps = 31/357 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D   ++V++R      +              K+    +K +V
Sbjct: 205 HHLVRTVPGNGLILAPKQDQSLQDVIERGCWTEKQF---SGVDGDWQAHKLVVDGSKFEV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 SLQGE-KVGIVDWVLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGC---GGDRDQGKRPIMGKIAL 407
              G  +Y D+AH   ++E+ L  +R  +   RI+ V         R   K  +    +L
Sbjct: 321 EQ-GVTVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVNKNTL--AASL 377

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD   +   +      ++I  +                 +   +E     D ++V
Sbjct: 378 HSADEVFLFQPDSIDWSVQEIADQCKQ---PAFVDAEMDSFVAKIVERAQPGDQILV 431


>gi|33519614|ref|NP_878446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Blochmannia floridanus]
 gi|62900574|sp|Q7VQI9|MURD_BLOFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33517277|emb|CAD83661.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Blochmannia floridanus]
          Length = 444

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 102/326 (31%), Gaps = 39/326 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L            I VV +   F+   ++         I+A+TG++GKS
Sbjct: 67  ANLIVVSPGVRLDHPIIIEAMKLGIEVVGDIELFVREISA--------PIIAITGSNGKS 118

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V ++ +++G S    G                               +      +
Sbjct: 119 TVTQLVSKMAKQAGWSVGVAGNIGVPVLSL--------------------LKKQYELYVL 158

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  LD      ++  A +  N+  DH+D +          +   + +       ++ 
Sbjct: 159 EISSFQLDV--TYSLRATAATILNISVDHMDRYP---KGLEEYICSKKRIYHNSYFCVVN 213

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  +K ++          ++           ++        +  + E         + 
Sbjct: 214 DSDPLTKPLLNDGIYHVSFSMNSKSADY-----RLEYYKGNNWIVANGEYVLSCAELKIN 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 N L A  L   + I   + L+ L     +  RF+ V  N     I    A    
Sbjct: 269 NCMNYMNMLSALALSDIVKIPRIVSLQVLRFFSGLSHRFQLVYKNRNVCWINDSKATNVG 328

Query: 368 SL-EMILKNIRTITSGRIIVVFGCGG 392
           +  E I   I T+  G + ++ G  G
Sbjct: 329 ATKEAINNTIITLRDGNLHLLLGGDG 354


>gi|320540465|ref|ZP_08040115.1| putative bifunctional folylpolyglutamate synthase/ dihydrofolate
           synthase [Serratia symbiotica str. Tucson]
 gi|320029396|gb|EFW11425.1| putative bifunctional folylpolyglutamate synthase/ dihydrofolate
           synthase [Serratia symbiotica str. Tucson]
          Length = 436

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 14/178 (7%)

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +  + L        V     A  L         +    +                 
Sbjct: 250 HWQWQGGETLLAGLPMPNVPLVNAATALAALSYSSLDIDHRAIHAGLQQAMLPGRFQLVC 309

Query: 354 RGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           +  R+ +D AH  +  S             G++  V     D+D       G +A   A 
Sbjct: 310 QEPRLILDVAHNPHAASYLAGRLAKLPRNGGKVRAVVAMLSDKDIA-----GTLACLRAQ 364

Query: 411 -DIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D       D PR    E +   ++       +  +   A R A++  +KQD+++V G
Sbjct: 365 VDQWYCAPLDEPRGARAELLAQHLMQ----PRQFIDVETAWRQAMQDADKQDIIIVCG 418


>gi|226328326|ref|ZP_03803844.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
 gi|225203059|gb|EEG85413.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
          Length = 487

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 118/376 (31%), Gaps = 48/376 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVT 121
           +GA  +VVS+A S ++    A   +  P++     R+   L+      +G      +A+ 
Sbjct: 77  RGASVVVVSTAISAENPEIIAAREARIPVI-----RRAEMLAELMRYRHG------VAIA 125

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  + +  I  ++GL    +     + S     RL                   
Sbjct: 126 GTHGKTTTTAMISNIYAQAGLDPTFV-NGGLVKSAGTHARLG----------------CS 168

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              ++    S     H    ++ +    TN+  DH+D +             F   LP  
Sbjct: 169 RYLIAEADESDASFLH----LQPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFY 224

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A++  DD   + ++ +                 I   +         ++      D  
Sbjct: 225 GRAVMCLDDDVIRSIIPKVGRYITTYGFSEDADVRITHYEQKGAQGFFTIS-REGMPDLQ 283

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----- 356
            +   PG     NA  A  +    GI    +L  L        RF+F+G           
Sbjct: 284 VVLNAPGRHNALNATAAVAVATEEGIADEHILAALLSFQGTGRRFDFLGNYGLEHVNGQE 343

Query: 357 ---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLAD 411
               +  DY H    ++  +K  R     + +V+        R +        +     D
Sbjct: 344 GEVMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYEDFATVLNQ-VD 402

Query: 412 IAIVTDDNPRSEDPEK 427
           I ++TD     E P  
Sbjct: 403 ILLLTDVYSAGEAPIA 418


>gi|126695359|ref|YP_001090245.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542402|gb|ABO16644.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 448

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 82/280 (29%), Gaps = 22/280 (7%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N  +  I                  E++         +         + + N      
Sbjct: 158 TINKYKSDIGIINNIDFDHCDHFSNLNEVISTFKSFAKNSKKLLLNFDCETSRNNFYSNW 217

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIA 324
                        +  I    + TI    ++ +F      P+PG   + N   A      
Sbjct: 218 KWSNSTAKNVTYAIIPIEINSKYTIGKYYENGNFISSLNIPIPGLHNLSNITAAIAASRM 277

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM---------ILKN 375
           IG+D   + ++++ L +   RFEF G       +Y DYAH  N ++             +
Sbjct: 278 IGVDFIEIKKNIKYLKLPKKRFEFRGQLDE-RSLYDDYAHHPNEIKETIKLGRLLIQQNH 336

Query: 376 IRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------I 428
            +     R+I +F      R +       +     AD+  VT      E  E       I
Sbjct: 337 NKECQKSRLIAIFQPHRYSRVKQFTKEFAEELSK-ADVIYVTSIYGAGEGNEDRITSKII 395

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I           N  E  +   E+  K D+++  G G
Sbjct: 396 TDLIYKKNKNVSYINNYYEVTKNFYELTQKGDLILNMGAG 435


>gi|229822993|ref|ZP_04449063.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
 gi|229787806|gb|EEP23920.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
          Length = 463

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 117/362 (32%), Gaps = 41/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRL 162
             AS +    P  I+AVTG++GK++  S++ Q+   R    +   G     S    +   
Sbjct: 105 ELASWIA---PCPIVAVTGSNGKTTTTSWIHQMLAHRPQGQARLAGNIGVPSLVTANQA- 160

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            +P                   + +E SS  L     +  +      TNL   H+DYH +
Sbjct: 161 -SPD----------------DVIVMEVSSFQL--MGTEKFRPSIAVMTNLTSAHLDYHGS 201

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           Q+ Y  AK +L          A  +  +     +   A+    + +   +      ++  
Sbjct: 202 QEGYEAAKFKLVANQTA----ADFWVYNVTDPTLRAHANQVKAQQVPFSHLPASPEVQAQ 257

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A      +    E         +PG+  V NAL A  +   +G+ +  +   L     +
Sbjct: 258 GAYRQGDALYFRGEEVAKVSQIGVPGDHNVQNALAAIAVAKLLGVSNQAIQAELSAYAGM 317

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R + +  ++         +    +    LK+       R I      G+      P +
Sbjct: 318 PHRLQPIAKSAGRIFYNDSKSTNMVAATTALKSFTQ--PIRYIGGGLDRGNEFDDLIPHL 375

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
             +                 E  EK+       G+P      N  +A   A E     +V
Sbjct: 376 EHVVEAF----------LYGESKEKMARAFQQAGVPAIHLYENLDQASLAAYEAAQAGEV 425

Query: 462 LV 463
           ++
Sbjct: 426 VL 427


>gi|221194801|ref|ZP_03567858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium rimae
           ATCC 49626]
 gi|221185705|gb|EEE18095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium rimae
           ATCC 49626]
          Length = 472

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 124/381 (32%), Gaps = 36/381 (9%)

Query: 95  VDNTRKFLSLFASR----------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           V +T       A+            + + PE  +A+TGT+GK++  + V +I Q +G  +
Sbjct: 83  VPDTSALFLSAAAHSQEIIGEPEFAFRESPEKWIAITGTNGKTTTTTLVTKILQTAGQKA 142

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
             +G      +    +R  TP                      E SS  L    +  +  
Sbjct: 143 ISVGNIGRTITDELSSR--TPD----------------EWFVAELSSFQLAT--IARLHP 182

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              +  N+  DH+++H T  AY  AK R+FE     +   +   D+       +      
Sbjct: 183 KTAALLNITPDHLEWHGTLAAYAAAKERIFENFDIHDLAVVSDLDEYCRACAQRLEARHI 242

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                     K  H   +       + +             + G     NAL A+ L + 
Sbjct: 243 RVCHLNTEDPKTEHAAFIRDGVLVVRRSGKETELIRAADLKIHGLHNALNALAASALALE 302

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G+D   V   L     +  R E V   S    +    A  ++++E  L    T    R 
Sbjct: 303 AGVDPVSVRHALLDFEALEHRIEPVREVSGVLYVNDSKATNTDAVEKSLTAFPT----RG 358

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           +V+   G D+      +           AI      PR  +  ++     H     +   
Sbjct: 359 VVLLLGGHDKGTDLGSL-AAAVNRSCKTAICYGAAGPRIAEALEVEKTKQHSDLHVVSAP 417

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +  EA   A +     DV+++
Sbjct: 418 HMKEAFEAATKRAMAGDVVLL 438


>gi|242237993|ref|YP_002986174.1| UDP-N-acetylmuramate [Dickeya dadantii Ech703]
 gi|242130050|gb|ACS84352.1| UDP-N-acetylmuramate [Dickeya dadantii Ech703]
          Length = 460

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 105/359 (29%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AV GT GK++ A  V  I +  G     +       +F    RL       +   
Sbjct: 102 DRWVIAVAGTHGKTTTAGMVTWILEACGYQPGFV-IGGVPGNFTVSARLGQSPFFVVEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +        V  S   L  +             NL  DH D     +A        
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLILN-------------NLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         + I   K  A         
Sbjct: 203 QFHHLVRLVPGSGRIIIPANDLHLKQVMTMGCWSEQELVGEEGIWKAKKVASDASVFQVY 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  +  + L GE  ++N L+A      +G+      + L +      R E  GT  
Sbjct: 263 LDNELVGEVSWKLVGEHNMHNGLMAIAAARHVGVMPGDACQTLGEFINAHRRLELRGTA- 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------KI 405
            G  +Y D+AH   ++   L  +R+   G  RI+ V        +     MG        
Sbjct: 322 DGVSVYDDFAHHPTAILATLAALRSKVGGTARILAVLEP-----RSNTMKMGHCKNELAP 376

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AL  AD   +         P ++       +       +    +   ++     D ++V
Sbjct: 377 ALGRADGVFLFQPQH---IPWQVAEVADACVQPAHWSADVDTLVDMIVKTAQPGDHILV 432


>gi|228910292|ref|ZP_04074109.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis IBL 200]
 gi|228849352|gb|EEM94189.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis IBL 200]
          Length = 433

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 88/309 (28%), Gaps = 16/309 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I +     +        V  E    G      + I  +    TN+G DH+     
Sbjct: 120 TEFEIITVMAICYFGKVNFCDVVLFETGLGGRFDS-TNVIHPVLTIITNIGHDHMHILGN 178

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T       K  + +  +P  +           + V K  H     +            + 
Sbjct: 179 TLGEIAYEKAGIIKSGVPVITGVQDEEALEVIQNVAKENHANLYELGKHFTALHKQSKED 238

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                         + +         G   +    V         +     +    +   
Sbjct: 239 GEQFDFTCPFAAFEDLQISMKGIHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLREAY 298

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE +        I +D AH    +E ++K +      + ++V F   GD+      
Sbjct: 299 WIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDKNVIVLFTALGDKQLHN-- 353

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEMLN 457
            M      +AD  I T           I A+ +         +   N  +AI T +EM+ 
Sbjct: 354 -MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESKLVFENWKDAIDTKVEMIG 408

Query: 458 KQDVLVVAG 466
           + DV ++ G
Sbjct: 409 ENDVFIITG 417


>gi|213622847|ref|ZP_03375630.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 385

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +   GR++ V G   D+D      
Sbjct: 250 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLHDKD------ 300

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A + AI+
Sbjct: 301 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGN----VYDSVAQAWQAAID 353

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 354 AAQPEDTVLVCG 365


>gi|302871713|ref|YP_003840349.1| FolC bifunctional protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574572|gb|ADL42363.1| FolC bifunctional protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 437

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 11/156 (7%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N + A              L          GRFE          I +D AH  + +++++
Sbjct: 271 NCIYAYECLRENYDIKTEALVRGLLNARWNGRFEVF---MNSPLIVLDGAHNVDGMKVLV 327

Query: 374 KNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKIRA 430
           +N +T  S + IV V G   D++  K   M  +   +A   I T      R+   E+   
Sbjct: 328 ENCKTYLSNKKIVAVAGILKDKEYEK---MISLLKSVAREVIFTLVPYQKRAFSEEEALD 384

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +    G     +  +AI+ AI +  +   +++ G
Sbjct: 385 --VSNRFGLEFIADFKDAIKYAISLCGEDGAVIICG 418


>gi|291522116|emb|CBK80409.1| folylpolyglutamate synthase/dihydrofolate synthase [Coprococcus
           catus GD/7]
          Length = 450

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKR 399
              GRFE +    +   + +D AH  + ++ ++ +++   S +  I+V G   D+D    
Sbjct: 304 YWQGRFEVM---EKNPSLIIDGAHNPDGVQSLVDSMKAYLSDKPVILVMGVFADKDY--- 357

Query: 400 PIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             M ++  D +D  I    DNPR    E+++          +   ++ EA+  A ++   
Sbjct: 358 RQMLEMVSDCSDTLIAFKPDNPRGLAAEQLKETAEPFFKRTLAAKSQAEALAIARKIGEG 417

Query: 459 QDVLVVAG 466
              +V  G
Sbjct: 418 NHAIVCFG 425


>gi|228941624|ref|ZP_04104171.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974553|ref|ZP_04135119.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981148|ref|ZP_04141448.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis Bt407]
 gi|228778348|gb|EEM26615.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis Bt407]
 gi|228784956|gb|EEM32969.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817836|gb|EEM63914.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942236|gb|AEA18132.1| folylpolyglutamate synthase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 433

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 111/387 (28%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             +   + +   TP          
Sbjct: 42  KCIHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIETFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCR 266
             T +     D+                 ++    P I    D  + +V++         
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVKDEEALQVIQNVAQENHAN 220

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  +G     +H +                 +D         +       + A + +   
Sbjct: 221 LYELGKHFTALHKQSNEDGEQFDFTCPFTAFEDLQISMKGIHQVGNAALALMAVMYVKTY 280

Query: 327 IDS---ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           +        +    +     GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEGIRTGLREAYWIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVAAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--- 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGRLETIADEMIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +EM+ + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEMIGENDVFIITG 417


>gi|307140927|ref|ZP_07500283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|331644982|ref|ZP_08346099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|284924407|emb|CBG37531.1| murein peptide ligase [Escherichia coli 042]
 gi|331035957|gb|EGI08195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|332346312|gb|AEE59646.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMNK88]
          Length = 457

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 102/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+        L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPVDAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|157368712|ref|YP_001476701.1| UDP-N-acetylmuramate [Serratia proteamaculans 568]
 gi|157320476|gb|ABV39573.1| UDP-N-acetylmuramate [Serratia proteamaculans 568]
          Length = 459

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 102/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYQPGFV-IGGVPGNFDVSARLGGSPFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +        V  S   L  +             NL  DH D     +A        
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLILN-------------NLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     +            
Sbjct: 203 QFHHLVRLVPGKGKIILPDNDSHLKQVMAMGCWSEQELVGEEGAWRAQKLTPDASHYAVF 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  +  + L GE  ++N L+A      +G+        L        R E  G  +
Sbjct: 263 LNGEQVGEVKWSLVGEHNMHNGLMAIAATRHVGVLPEDACRALGDFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC------GGDRDQGKRPIMGKI 405
            G  +Y D+AH   ++   L  +R+   G  RI+ V          G       P +G+ 
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGISKNDLAPSLGR- 380

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +   +     P ++       +       +    +   ++     D ++V
Sbjct: 381 ----ADEVFLFQPHH---IPWQVAEVAEACVQPAHWSADLDTLVDMIVKTAQPGDHILV 432


>gi|254449012|ref|ZP_05062466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
 gi|198261406|gb|EDY85697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
          Length = 447

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 109/356 (30%), Gaps = 44/356 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   ++A+TG++GKS+V   V  + Q +G++    G   T +             +
Sbjct: 104 FARCAQAPLIAITGSNGKSTVTELVGSMAQSAGMTVAIGGNLGTPALEILAP------AV 157

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L                +E SS  L+   +  ++  A +  N+  DH+D + + +A   
Sbjct: 158 DL--------------YVLELSSFQLET--VQSLRPKAATVLNISEDHMDRYSSIEA--- 198

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                    +     A+I   D     ++           S         L     +  +
Sbjct: 199 -YAAAKAAAISHSEVAVINRQDKRVAAMLSDGERVTFGSDSSEAGYGLERLAGTVWLTAQ 257

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
            +  I V                      AAG+           L  L++   +P R E+
Sbjct: 258 GERLIEVSDLKICGEHNWLNALAALALADAAGIAR------EASLAALKEFAGLPHRTEW 311

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +    I    A    +    +           +V+   G  + Q   P+   +   
Sbjct: 312 VAERNGVIYINDSKATNVGATAAAVTGFDQ-----PLVLIAGGVGKGQDFAPLKTSLKAR 366

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A   ++        D E I   +   +  +    +  EA+  A E+    DV+++
Sbjct: 367 -AKAVVL-----LGHDAELIGQALGDEVAQY-RVASMSEAVSRATELAECGDVVLL 415


>gi|27904701|ref|NP_777827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|31076803|sp|Q89AQ2|MURD_BUCBP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27904098|gb|AAO26932.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 442

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 60/396 (15%), Positives = 135/396 (34%), Gaps = 54/396 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+VS   +    +    +   I ++ +   F+              I+A+TG++GKSSV
Sbjct: 71  LIIVSPGITPSHPALKFATKKNIEIIGDIELFVQE--------TKVPIIAITGSNGKSSV 122

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V++I Q++G +++  G     +                        ++      +E 
Sbjct: 123 TKIVKEIIQKAGFTTYIGGNIGIPALNI--------------------VNKFAHFFILEL 162

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+  R   +K    +  N+  DH++ + +         +  +++       II  D
Sbjct: 163 SSFQLE--RTFSLKAYIATILNITPDHLNRYSSD---IKEYEKAKQKIYKNSKICIINVD 217

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +  +     +        +  G              +   ++  + + K       L G 
Sbjct: 218 NPVTINRQAQLTKCISFGVHSGDYHLSHTYTNTWLCYKSLKLINTKKLK-------LSGR 270

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  +   + I   + +  L+    +P R + V  N+    I    +    S 
Sbjct: 271 HNYINMLSALAIVHELKISFKISVRILKNFLGLPHRCQKVYKNNNITWINDSKSTNIAST 330

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +  +++I T    R+I+    GGD+      ++  I  + A +      +         +
Sbjct: 331 KSAIQSINTKGKIRLIL----GGDKKSSNLNLLKPILKNNAIVIYCYGKD---------K 377

Query: 430 AEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
            E+ +  P   +      E ++     +   DV+++
Sbjct: 378 KELFNLYPHKSKIFETLQEVMQHISVQVQPGDVVLL 413


>gi|329943203|ref|ZP_08291977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|332287783|ref|YP_004422684.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|313848356|emb|CBY17359.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila psittaci RD1]
 gi|325506725|gb|ADZ18363.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|328814750|gb|EGF84740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|328915041|gb|AEB55874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
          Length = 420

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 119/395 (30%), Gaps = 68/395 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             V S              +  I VV +        A +    H    + VTG++GK++ 
Sbjct: 62  LCVRSPGIKTSHPVIVEAKHRGIPVVTDI-----QLAFQDPEFHRYPSIGVTGSAGKTTT 116

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
             F+  + +  G+S+  +G                             +        VE 
Sbjct: 117 VLFLVHLLRSVGISACAMGNIGFPI---------------------LQAMYQKGIRVVEM 155

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L +  ++   L A +  N+  +H+DYH T QAY  A                    
Sbjct: 156 SSFQLAEQEIEIPVLSAATILNISENHLDYHYTLQAYSEA-------------------- 195

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                    +++   C                   + + +++ + ++            +
Sbjct: 196 ---------KSNIVKCLQSPESLWVGDGVSFGKSYLDSTREINLVLDKGSALKPL-YLHD 245

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              Y A  A        I     LE +      P R E++G       I    A T +S+
Sbjct: 246 RNNYCAGYALAN-EVTKIPLEAFLEAVLTFDKPPHRIEYLGEKDGVRYINDSKATTMSSV 304

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  ++       I+V   G ++      ++  +   +    IV     R E    I 
Sbjct: 305 EKALIAVKE-----NIIVILGGRNKGSNFASLIPTLTQTV--KHIVAMGECRKE----IA 353

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +        +  +  EA+  A  +    DV+++
Sbjct: 354 QALSSSNLPLTQARDLQEAVNVAQSIAQPGDVILL 388


>gi|315122420|ref|YP_004062909.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495822|gb|ADR52421.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 475

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 140/419 (33%), Gaps = 51/419 (12%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           AE +VVS+A    +    A    N PI+      + L+              ++V+GT G
Sbjct: 67  AEILVVSTAIDKDNVECVAARERNIPIIYRS---EMLAGLMRA------RKSISVSGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  + ++  L    I     ++S+  + R+ T   I +    S          
Sbjct: 118 KTTTTSLIAALLEQGNLDPTVI-NGGIVNSYGTNARIGTGEWIVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+DY+    A   A    F + +P    A+
Sbjct: 168 -----------GTFIKLPSDIVVVTNIDPEHLDYYSDFDAIR-AAFYKFIDNVPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV------EGKD 299
           +  D      ++ R  N          Q    +                         + 
Sbjct: 216 VCLDHPEILSLVARIQNRKIITYGQHPQADVCYSNIRKYSGRSIFDVTLQGSLTPTPIEI 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + PL G + + NA  A  +   +G+ S  + + L     +  RF  +G       I+
Sbjct: 276 KDLVLPLIGNYNISNASAAIAIAHRLGLSSEDIAKGLAGFSGIKRRFTLIG-IWNDVHIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    +  +L  +R I  G++I +      R      +  + +     +D  +++ 
Sbjct: 335 DDYGHHPVEISAVLSAVRQICPGKVIAI--HQPHRYTRLSTLFDQFSKCFVDSDTVLISP 392

Query: 418 DNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                E        +++  +I   G P      +    +   ++++   D ++  G G+
Sbjct: 393 VYAAGEKVISGFSSQELVQKIKESGHPEAYYLDSFDHLVSKILDIVEPGDFIIFFGAGN 451


>gi|326797499|ref|YP_004315318.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
 gi|326548263|gb|ADZ76648.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium sp. 21]
          Length = 454

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 95/342 (27%), Gaps = 46/342 (13%)

Query: 97  NTRKFLSLFASRLYGKH--------PENILAVTGTSGKSSVASFVQQICQRSGLSSFQI- 147
           +   F      RLY +             +AV GT GK++ +S +  I   SG       
Sbjct: 90  DLVAFFQRLGYRLYKRSEILGKISESHFTIAVAGTHGKTTTSSMIAHILTSSGRPCSAFL 149

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
           G  +   +       +    +   +      +                      +     
Sbjct: 150 GGIAANYNTNLLLADSDLFVVEADEFDRSFLT----------------------LHPNIA 187

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             T    DH+D +   +            +L      +        + + +  H      
Sbjct: 188 VVTATDPDHLDIYGDSE-----------HMLESFRLFVNQVAKDGKRIIKEGLHLPTDIR 236

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
            +V  +                   +      FD    + G+  + NA+ A  +   +G+
Sbjct: 237 YAVEKRADVYATNIQIRNKCFYFDYLGYNKSIFDIKLGIAGKHNIENAVAAITVAKLLGV 296

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D   +   L     V  RFE    N        DYAH    L   L  ++ +   + I  
Sbjct: 297 DDEAISGSLASFKGVKRRFE-YIVNREDQVYVDDYAHHPEELRACLSAMKELYGDKEITC 355

Query: 388 FGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
                   R +       ++   LAD+ ++ D  P  E P +
Sbjct: 356 VFQPHLFTRTRDFVDEFAEVLG-LADVLLLMDIYPAREQPIE 396


>gi|304392258|ref|ZP_07374200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
 gi|303296487|gb|EFL90845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
          Length = 463

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 123/385 (31%), Gaps = 61/385 (15%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           + +V +   F    A       P  ++A+TGT+GKS+  + +  + +++G      G   
Sbjct: 94  VPIVGDVELFFRQMAKAGR---PAPVIAITGTNGKSTTTALIAHVLKQAGRDVQMGGNIG 150

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
                      T                       VE SS+ +D      I    G   N
Sbjct: 151 RAVLDLDPLSET----------------PANQVYVVEISSYQIDL--APSIAPHVGLLLN 192

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           L  DH++ H T + Y      + E L+     A++  DD + + +  R   +   ++++ 
Sbjct: 193 LTPDHLERHGTLENY----AGIKERLVAASDLAVVGLDDEHCRAISGRISASRTPLVTIS 248

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
             G          +     + I     D   +  L G+    NA  A   C A+G+ S  
Sbjct: 249 KDGAADVFFADGKLIVDGDMVI-----DLSGVGSLRGQHNGQNAAAAFAACRAVGLSSEE 303

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIV 386
           +         +  R E  G       +    A  + ++   L +   +        +   
Sbjct: 304 IQSGFNSFPGLAHRMEQAGHVGDVLFVNDSKATNAEAVAPALSSFPKVHWIAGGLAKDGG 363

Query: 387 VFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           +       D+  K   +G+ A   A              P+ I          +   G+ 
Sbjct: 364 IGSLAPQFDRIAKAYFIGEAAGSFASQL-----------PDTI---------PYEIAGSL 403

Query: 446 IEAIRTAIEMLNKQDVLVVAGKGHE 470
            +A+  A    +     + AGKG E
Sbjct: 404 KQAVNHAARDAS-----LAAGKGAE 423


>gi|78188040|ref|YP_378378.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
 gi|109892699|sp|Q3ANV2|MURC_CHLCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78170239|gb|ABB27335.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
          Length = 467

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 9/230 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        +L  +H+D + T +    A +    ++                 E+ K   
Sbjct: 173 LTPTIAILNSLESEHMDTYGTLEELKQAFITFANKVPFYGRVICCV----DWAEIRKIIP 228

Query: 262 NAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAA 319
           +   R ++ G +    +    +  +      TI   G ++      +PG+  V NAL A 
Sbjct: 229 SLNRRYITFGIEEPADVMATDIVLLEGSTTFTIRAFGIEYPNVRIHVPGKHNVLNALAAF 288

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
              + +GI    ++  L     +  RF+   + + G  +  DYAH  + ++  +K  +  
Sbjct: 289 STGLELGISPERLIAGLGCYSGMRRRFQVKYSGNNGLMVVDDYAHHPSEVKATVKAAKDG 348

Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
               +++ VF      R +      G      AD   + D  P  E    
Sbjct: 349 WQHSKVVAVFQPHLFSRTRDFADEYGWALSR-ADEVYIADIYPAREKAAD 397


>gi|194337862|ref|YP_002019656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226722941|sp|B4SHE6|MURD_PELPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|194310339|gb|ACF45039.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 464

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 118/369 (31%), Gaps = 41/369 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             ASR        I+ +TGT GK++ ++ V  +C+  GL +                 + 
Sbjct: 97  ELASRFCK---ARIVGITGTDGKTTTSTLVHALCEEDGLRNGYR--------AYSVGNIG 145

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P    +    +           VE SS+ L+  R   +K       N+  DH+D +  +
Sbjct: 146 VPFSSMVLDMKA------GDIAVVELSSYQLE--RSPTLKPEVAVIMNITPDHLDRYAGE 197

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              + A               I   DDA  +E           ++S G +     +  + 
Sbjct: 198 LQGYAAAKFRIYANQGAGDTLIYNEDDALLREHFACRDQFPFNIMSFGMEPACKGVPDIR 257

Query: 284 AIHNKQQVTISVEG--------KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
               +    ++                     G   + N L A  +  A+GI   +V + 
Sbjct: 258 TFFLEGDTLVAHTPDGDEPVLVTSDFLKKSFRGRHNISNVLAAVAVAGALGIQREVVCQV 317

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           + +   V  R EFV T +    +    A   N+L   L+ +               G RD
Sbjct: 318 IREFRGVEHRQEFVMTINGVDWVNDSKATNMNALRQALEAL-------PATAVLIAGGRD 370

Query: 396 QGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           +G     + ++      + I        E  +KI +     +      G+  +A+  A +
Sbjct: 371 KGNDYAAITRLVEKKVSLLI-----ALGESQDKIVSA-FKDVVAVKAAGSLEDAVLLARD 424

Query: 455 MLNKQDVLV 463
             +    ++
Sbjct: 425 AASSGQTVL 433


>gi|253689173|ref|YP_003018363.1| FolC bifunctional protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755751|gb|ACT13827.1| FolC bifunctional protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 422

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/388 (13%), Positives = 106/388 (27%), Gaps = 34/388 (8%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V    + L L       +    +  V GT+GK +    ++ I   +GL          +
Sbjct: 34  RVKQVAEHLHLL------QPAPTVFTVAGTNGKGTTCCTLESILLAAGLRVGVYSSPHLV 87

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +           L +A    +   +       S    +   L  ++L   +  ++ 
Sbjct: 88  RYTERVRIQGK----ELPEAQHTQAFADIEAGRGAVSLTYFEFGTLSALQLFKQANLDVV 143

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +       A       +               +D  S    K       R   VG  
Sbjct: 144 ILEVGLGGRLDATNIVDADVSVVTSIAIDHTDWLGNDRESIGREKAGIFRQSRPAVVGEP 203

Query: 274 GKFIHLKKVCAI-----------HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +  V A             +      +   +D            V  A  A  L 
Sbjct: 204 DMPGTIADVAADKGALLRRRGRDWDYSVQRETWSWQDKQRELSRLPLPNVPLANAATALA 263

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
                   +  + + +            T     R+ +D AH  ++   +   +  + + 
Sbjct: 264 ALHYSSLNVSEDAIRQGLQHATLPGRFQTVQESPRLILDVAHNPHAAAYLANRLAALPTS 323

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPG 438
           G+I  V G   D+D       G +A    L D       + PR         +I   +  
Sbjct: 324 GKIRAVVGMLSDKDIA-----GTLAYLTPLVDEWYCAPLEGPRG----ATAQQIAEHLTR 374

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                + + A + A+    +QD+++V G
Sbjct: 375 SQSFPDVVAAWQQAMSEAAEQDIVIVCG 402


>gi|237732348|ref|ZP_04562829.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Citrobacter sp. 30_2]
 gi|226907887|gb|EEH93805.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Citrobacter sp. 30_2]
          Length = 422

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 114/395 (28%), Gaps = 48/395 (12%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V    + L +       K    +  V GT+GK +    ++ +   +G           +
Sbjct: 34  RVSQVARKLGVL------KPAPFVFTVAGTNGKGTTCRTLESVLTAAGYKVGVYSSPHLV 87

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +        P     A           +S+       +   L  + L   +  ++ 
Sbjct: 88  RYTERVRVQGRELPESAHTASFAEIEDARGDISLTY----FEYGTLSALWLFKQAQLDVV 143

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +       A       +                D  S    K       +   VG  
Sbjct: 144 ILEVGLGGRLDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRADKPAIVGEP 203

Query: 274 GKFIHLKKV--------CAIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAA 319
                +  V               +  ++     F          PLP   Q   A   A
Sbjct: 204 EMPYTIADVAQESGAILQRCGVDWRYAVTENDWSFTDAHGTLAHLPLPQVPQPNAATALA 263

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  +    S   +    +  ++PGRF+ V  + R   +  D AH  ++ E +   ++ +
Sbjct: 264 ALRASGLNVSEQAIRDGIEQAILPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKKL 320

Query: 380 TS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAE 431
              GR++ V G   D+D         IA  LA +  V DD        PR    E++   
Sbjct: 321 VKSGRVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEH 371

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  G        +  +A   A+     +D ++V G
Sbjct: 372 LGKGNA----YDSVAQAWTAALAEAKPEDTVLVCG 402


>gi|85058428|ref|YP_454130.1| UDP-N-acetylmuramate--L-alanine ligase [Sodalis glossinidius str.
           'morsitans']
 gi|109892741|sp|Q2NVV0|MURC_SODGM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84778948|dbj|BAE73725.1| UDP-N-acetylmuramate-alanine ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 490

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 128/409 (31%), Gaps = 51/409 (12%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
              +  A      P++      + L+      +G      +A+ GT GK++  + V  I 
Sbjct: 91  DNPEIVAAKEVRIPVIQRA---EMLAELMRFRHG------IAIAGTHGKTTTTAMVASIY 141

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +GL    +     + +     RL                      ++    S     H
Sbjct: 142 AEAGLDPTFV-NGGLVKAAGVHARLG----------------CSRYLIAEADESDASFLH 184

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E++
Sbjct: 185 ----LQPMVAIITNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVIRELL 240

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNAL 316
            R                   +        +   T + + K D       PG     NA+
Sbjct: 241 PRVGRQITTYGFSDDADL--RITDYRQDGARGSFTFTRQEKADLRVELNAPGRHNALNAV 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--------RGGRIYVDYAHTSNS 368
            A  +    GI+   +L+ + +      RF+ +G               +  DY H    
Sbjct: 299 AAIAVATEEGINDESILQAMLQFQGTGRRFDDLGHYDLVNVNGKTGEVMLVDDYGHHPTE 358

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDP- 425
           ++  +K  R     +  +V      R    R +    A  L+  D+ ++ D  P  E P 
Sbjct: 359 VDATIKAARAGWPDKR-LVMVFQPHRYTRTRDLYDDFANVLSGVDVLLMLDVYPAGEAPI 417

Query: 426 -----EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  +   I   G    I   +      T  ++L   D++++ G G
Sbjct: 418 PGADSRSLCRTIRGRGKVDPILVPDMETLPATLAQVLQDNDLVLMQGAG 466


>gi|116494762|ref|YP_806496.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           ATCC 334]
 gi|239631641|ref|ZP_04674672.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301066323|ref|YP_003788346.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           str. Zhang]
 gi|122263820|sp|Q039R8|MURD_LACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116104912|gb|ABJ70054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei ATCC 334]
 gi|239526106|gb|EEQ65107.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438730|gb|ADK18496.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           str. Zhang]
          Length = 459

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 100/339 (29%), Gaps = 21/339 (6%)

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
              V+         +   +        + +  + +       I +  +           +
Sbjct: 106 AYQVSEAQWIGITGTNGKTTTTTLIGLMLNQQRPHHAFDAGNIGIPVSQVAQKVGKDDTI 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  L    +  +       TN+   H+D+H  +  Y  AKMR+     P +   +
Sbjct: 166 VAELSSFQL--CGIKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIM 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +       E+ K++            +G    L           +T   +         
Sbjct: 224 NWDL-PEMHELAKQSKAQIVPFSRKNAEGARAQLID-------GWLTFDGDRIMKASEMQ 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL A       G+    + E L     V  R +++ T           A  
Sbjct: 276 IPGLHNIENALAAIAAVKLEGVGDDAIREVLRTFSGVKHRIQYLETIDGRRVYNDSKATN 335

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +  + L           IV    G DR      +   +   +  + +     P     
Sbjct: 336 VEAATVALNAFDQ-----PIVWLAGGLDRGLPMDALTPLVKKHVKSMVVFGQTAPLM--- 387

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            KI  +   G+P      N + A+  A E+    DV+++
Sbjct: 388 AKIAKD--AGVP-VQTTENVMTAVPLAYEVSRPGDVILL 423


>gi|91792018|ref|YP_561669.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
 gi|91714020|gb|ABE53946.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
          Length = 464

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 119/360 (33%), Gaps = 28/360 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I + SG    F IG        +     +    +   
Sbjct: 105 PGRWVLAVSGTHGKTSTSSMLAWILEYSGYEPGFLIGGVPQNFGVSARLGNSNFFVVEAD 164

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                 +       NL  DH D      A    + 
Sbjct: 165 EYDSAFFDKRSKFV---------------HYQPRTLVINNLEFDHADIFDDLTAIQR-QF 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIH 286
                 +P +   I  A+    ++V++    +     S G              K  +  
Sbjct: 209 NHVIRTVPGQGKIIWPANSEAVQQVIEMGCWSEQETYSAGVHDFNTEKTLGWHAKTLSAD 268

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
             +              + L G+  V NA++A      +G+  A  +  L +      R 
Sbjct: 269 AHEFEVYFDGHSQGVMSWNLIGQHNVENAVMAIAAARHVGVVPAQAMAALSEFSPPKRRL 328

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDR-DQGKRPIMGK 404
           E +GT   G  ++ D+AH   +++  L+ +R  + +G+I VV     +   QG       
Sbjct: 329 ELLGTIG-GVAVFDDFAHHPTAIDSTLQGLRAKVGNGKITVVLEPRSNTMKQGVHKDTLA 387

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +L  AD A +   +  S D +         IP    K +  + I          D +V+
Sbjct: 388 HSLVRADQAYLYQADSISWDLKSSMQ--TASIP-VSVKTDIEQIIDALCHDAKAGDTIVI 444


>gi|331001071|ref|ZP_08324702.1| UDP-N-acetylmuramate--L-alanine ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569376|gb|EGG51154.1| UDP-N-acetylmuramate--L-alanine ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 462

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 139/418 (33%), Gaps = 49/418 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSGK 126
           A  +V S+A    +       N  I VV   R   L+       G      +AV GT GK
Sbjct: 65  AGVVVTSTAVHADNPEVVEAKNRNIPVVP--RAIMLAELMRLRQG------IAVAGTHGK 116

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S +  I +R G   +F IG    +++   + +L     I      S  S       
Sbjct: 117 TTTTSLITSILERGGLDPTFVIG--GRLNAAGSNAKLGQGLYIVAEADESDASFLN---- 170

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +  +    TN+  DH+D +             F + LP    A+
Sbjct: 171 ----------------LSPVISVVTNIDEDHMDTYGHDLRNLRKAFTDFIQRLPFYGRAV 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
           +  +    + ++ +             +   I  + + A   +   T+  +G    +   
Sbjct: 215 MCIESENVRAILPKITKPILTYGF--REDAQIRAENIRADGTQMHFTLVRDGAAPEEITV 272

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGRIYV 360
            LPG   V N+L A G+ + + +    + E L     V  RF   G           +  
Sbjct: 273 NLPGVHNVLNSLAAIGVALTLDVPMEAIKEALATFKGVGRRFAVWGEAQSLKGEKFLVVD 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDD 418
           DY H    +   +   R     R ++V        + +     + ++  + AD  ++   
Sbjct: 333 DYGHHPTEMAATIAAARGAYPDRRLLVAFQPHRYTRTRDCFEDLVRVLSN-ADALVLEAV 391

Query: 419 NPRSE------DPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            P  E      D   +   I + G    +  GN  E +      + + DV++V G G+
Sbjct: 392 YPAGEEKIFGADSRSLCRSIRLTGKVEPLFAGNTDEVMELINNNVKEGDVVLVMGAGN 449


>gi|163790538|ref|ZP_02184967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
 gi|159874141|gb|EDP68216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
          Length = 461

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 102/279 (36%), Gaps = 22/279 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +  +K      TN+   H+DYH T++ Y  AKM + +    ++   + 
Sbjct: 168 MELSSFQL--MGITELKPHIAVITNIYSAHLDYHGTREEYVAAKMTITKNQTEEDYLILN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           + D    + + +++                ++L+     +         E         +
Sbjct: 226 W-DQPELRALSEKSKATIIPFSRKEILDNGVYLQDDVIYYQG-------EPVMAKETILV 277

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NA+ A  +   +  ++  +   LEK   V  R +FV             A  +
Sbjct: 278 PGDHNVENAMAAIAVAKLLNQENGAIRATLEKFTGVKHRTQFVTEFEERRFYNDSKATNT 337

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + E     ++       +++   G DR      ++  ++  +  + +        E   
Sbjct: 338 LATEN---ALKGFDV--PVILLAGGLDRGNDFDDLIPAMSGKVKALIVF------GETAT 386

Query: 427 KIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+       GIP  I+  N   A+  A E+   +DV+++
Sbjct: 387 KLAETGEKAGIPTIIDVQNVEAAVPVAYELSEAKDVILL 425


>gi|328542967|ref|YP_004303076.1| UDP-N-acetylmuramate-L-alanine ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412713|gb|ADZ69776.1| UDP-N-acetylmuramate-L-alanine ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 468

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 143/433 (33%), Gaps = 63/433 (14%)

Query: 60  IPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPE 115
           I  A     GAE +VVSSA    +          I VV   R+   L+           +
Sbjct: 55  IGHAAENLGGAEVLVVSSAIRRDNPELVAAREKLIPVV---RRAEMLAELMRF------K 105

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S +  +    GL    I     I+++  + R+     + +    S
Sbjct: 106 QAIAIGGTHGKTTTTSLIAALLDAGGLDPTVI-NGGIINAYGTNARMGAGDWMVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                                     +       TN+  +H+D++        A  R F 
Sbjct: 165 D--------------------GTFVKLPADVAVVTNIDPEHLDHYGDFAGVR-AAFRHFV 203

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           E +P    A++  D    + ++ +  +          Q        V  +  +   ++  
Sbjct: 204 ENVPFYGFAVMCLDHPEVQSLVGQIEDKRIVTYGANPQADV-RFTDVAMVGGRSTFSVRF 262

Query: 296 EGKDFDFLF-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +             P+PG   V NA  A  +   +G+DS  + + L     V  RF +
Sbjct: 263 QDRRTGETGTLSNLVLPMPGLHNVANAAAAIAVAHELGVDSEAIRKGLAGFGGVKRRFTY 322

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G +  G  I+ DY H    +  +L   R    GR+I V          +   +  +  D
Sbjct: 323 TG-SWNGVEIFDDYGHHPVEIRAVLHAARETAKGRVIAVV------QPHRYSRLASLFDD 375

Query: 409 L------ADIAIVTDDNPRSEDP--EKIRAEIIHGIP----GFIEKGNRIEAIRTAI-EM 455
                  AD  IV       E P     R +++ G+       +      EA+   + E 
Sbjct: 376 FSTCFNDADTVIVAPVYAAGEQPIEGAGRDDLVTGLKTRGHRSVFALEGPEALAALVAEH 435

Query: 456 LNKQDVLVVAGKG 468
               D +V  G G
Sbjct: 436 ARPGDYVVCLGAG 448


>gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
 gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
          Length = 494

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 112/363 (30%), Gaps = 43/363 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             LA+TGT+GK++    V  I + +G     +G                   + L     
Sbjct: 122 KWLAITGTNGKTTTVGLVGSILEAAGAKYAVVGNVGEPIVTTVLKADVEVLAVEL----- 176

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                         SS  L+      +  +A    N+  DH+D+H + + Y +AK R++E
Sbjct: 177 --------------SSFQLET--THTLSPLAAVCLNVDADHLDWHGSVENYRDAKARIYE 220

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--------HLKKVCAIHN 287
                    +            +    A     ++G                +      +
Sbjct: 221 NTQVGCVYDVTDRTVENMVAGAEVIEGARAIGYTLGSPAPSQIGLVEKLLVDRAFVENRH 280

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q   ++     F F    P    V + L A  L  A G+    V   L        R  
Sbjct: 281 HQAEAVAEISDIFGFASEHPSIALVKDTLAAIALTRAYGVSGEAVAAGLRNFKSAKHRRA 340

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +G  +    I    A  +++ +  L         + +V    G  + Q    ++  I  
Sbjct: 341 VIGKTADVVWIDDSKATNTHAAKASLAGFPP----QSVVWIAGGDTKGQELHSLVADIKD 396

Query: 408 DLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIE----AIRTAIEMLNKQDVL 462
            L  + ++  D  P  E  +   AEI      ++      +     +  A+ +    + +
Sbjct: 397 CLRGVVVIGADPTPVVEALQTNAAEI-----PYVVVDGHEDMMFSVVNEAVALSLPGNTV 451

Query: 463 VVA 465
           V+A
Sbjct: 452 VLA 454


>gi|218295975|ref|ZP_03496755.1| FolC bifunctional protein [Thermus aquaticus Y51MC23]
 gi|218243713|gb|EED10241.1| FolC bifunctional protein [Thermus aquaticus Y51MC23]
          Length = 414

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 12/125 (9%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR + +     G  + +D AH       + + +R        +V     D+D      
Sbjct: 280 NPGRLQRLFYG--GKELILDGAHNPEGALALKEALRFHGLLPAALVLAFSRDKD---HAA 334

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M +    LA + +    +PRS+DP      ++   PG + + + ++A+  A  +    D 
Sbjct: 335 MAEALRGLAPVVLTRYASPRSQDP----RALLPLFPGALLEEDPLKALARAFGLA---DR 387

Query: 462 LVVAG 466
            VVAG
Sbjct: 388 AVVAG 392


>gi|157144744|ref|YP_001452063.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Citrobacter koseri ATCC BAA-895]
 gi|157081949|gb|ABV11627.1| hypothetical protein CKO_00471 [Citrobacter koseri ATCC BAA-895]
          Length = 422

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 113/384 (29%), Gaps = 42/384 (10%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     K    +  V GT+GK +    ++ +   +G           +    +      
Sbjct: 39  AARLGVLKPAPFVFTVAGTNGKGTTCRTLESVLTAAGYKVGVYSSPHLVRYTERVRVQGN 98

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
             P     A           +S+       +   L  + L   +  ++    +       
Sbjct: 99  ELPESAHTASFAEIEAAREDISLTY----FEYGTLSALWLFKQAQLDVVILEVGLGGRLD 154

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-- 282
           A       +                D  S    K       +   VG       +  V  
Sbjct: 155 ATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPYTIADVAQ 214

Query: 283 ------CAIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                           ++ +G  F          PLP   Q   A   A L  +    S 
Sbjct: 215 ETGAQLQRRGVDWHYDVTGDGWSFTDGEGTLANLPLPQVPQPNAATALAALRASGLNISE 274

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFG 389
             +       ++PGRF+ V  + R   + +D AH  ++ E + + ++ +  +GRI+ V G
Sbjct: 275 QAIRDGIARAILPGRFQIVSESPR---VILDVAHNPHAAEYLTERLKMLPKNGRILAVIG 331

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEK 442
              D+D         IA  LA +  V DD        PR    E++   +  G       
Sbjct: 332 MLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG----TVY 378

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +   A   A+     +D ++V G
Sbjct: 379 DSVALAWHAALAEAKPEDTVLVCG 402


>gi|329964555|ref|ZP_08301609.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fluxus YIT
           12057]
 gi|328524955|gb|EGF52007.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fluxus YIT
           12057]
          Length = 457

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 116/365 (31%), Gaps = 41/365 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HNSKGLCVAGTHGKTTTSTMAAHLLHQSHVGCTAF-LGGIAKNYGTNLLLSQESPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S                      +       T    DH+D + T++AY  +   
Sbjct: 169 ADEFDRSFHW-------------------LSPWISVITATDPDHLDIYGTKEAYLESFRH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
               + P  +  +    +      ++     G  + +        H + +          
Sbjct: 210 YTTLIQPGGALILHKGLE------LQPDVQPGVTIYTYSRNEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ + +  D    +P    + N + A  L    G     + + +     V  RF+F   
Sbjct: 264 FIAPDTRINDIRLGVPVSINIENGVAAMALAHLSGATDEEIKQAMASFRGVNRRFDF-KL 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
            +       DYAH    +   LK+IR +   + I          R +            L
Sbjct: 323 KTDKVVFLSDYAHHPAEIAQSLKSIRELYRDKKITAIFQPHLYTRTRDFYKDFADSLS-L 381

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           AD  I+T+  P  E P      E I   +    P   +   R E I   +      +VL+
Sbjct: 382 ADEVILTEIYPAREQPIPGVSSELIYDHL---HPETEKCICRKENILKLLSG-KSIEVLI 437

Query: 464 VAGKG 468
           V G G
Sbjct: 438 VLGAG 442


>gi|284036910|ref|YP_003386840.1| FolC bifunctional protein [Spirosoma linguale DSM 74]
 gi|283816203|gb|ADB38041.1| FolC bifunctional protein [Spirosoma linguale DSM 74]
          Length = 428

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GRF+ +G+     R+  D AH    LE +   IR+I    + ++ G   D+D+ K   +
Sbjct: 300 KGRFQTLGS---HPRVIADTAHNQPGLEALFDTIRSIPYKTLRIIIGLVADKDRSK---V 353

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +    A       + PRS   + ++ E            +   A+  A+E  +  D+L
Sbjct: 354 LSVLPTNAVYYFCQANTPRSLSAQLLQQEARVLGRIGDVFTDVNTALAAALEQADPDDLL 413

Query: 463 VVAG 466
           ++ G
Sbjct: 414 LITG 417


>gi|317055027|ref|YP_004103494.1| UDP-N-acetylmuramate/alanine ligase [Ruminococcus albus 7]
 gi|315447296|gb|ADU20860.1| UDP-N-acetylmuramate/alanine ligase [Ruminococcus albus 7]
          Length = 477

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 139/420 (33%), Gaps = 53/420 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE I+ ++A    +        +  +V +     L +          EN L V GT GK
Sbjct: 72  GAELIIYTAAIMADNPELIAAKESGAIVCERA-DILGVITGWY-----ENALCVCGTHGK 125

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S + QI   +G     +      S                A     +  +   +  
Sbjct: 126 TTTSSMLTQIFVDAGEDVSCVIGGKLPSIGGSGR----------AGKSKDMVCEACEY-- 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                    Q     +        N+  DH++Y +  +    +    F       S A+I
Sbjct: 174 ---------QDHFLKLHPDCAIILNVDADHLEYFKNIENIIKS----FHTFADMASSAVI 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
           Y  D  +        +    +     +      + +       + T   +G+   +    
Sbjct: 221 YNGDDANTRKALEGISGKELISFGWNKANDYSAEIISKKGLVTRFTAFFKGESLGEIEIN 280

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   V NAL A       GI      + L   H    RF+ +    RG  I  DYAH 
Sbjct: 281 VPGNHNVLNALAALAAARYSGISFEAAAKGLSSFHGAIRRFQLI-DKVRGLTIVDDYAHH 339

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPRSE 423
              +E+ L+  +++   R+  VF      R +       + AL++ADI+++TD    R +
Sbjct: 340 PKEIEVTLRAAKSLDFKRVWAVFQPFTYSRTEILMDDFAR-ALEIADISVITDIMGSREK 398

Query: 424 DPEKIRAEIIHG-------IPGFIEKGNRIEA----------IRTAIEMLNKQDVLVVAG 466
           +   I  E++              E  ++  A          I   ++     D+L+  G
Sbjct: 399 NDHGIYTEMLGEKTRNAVWFDTPHEVVDKQTAEQKEKNFDECIDYIMKNAEDGDILITFG 458


>gi|296118757|ref|ZP_06837333.1| tetrahydrofolate synthase [Corynebacterium ammoniagenes DSM 20306]
 gi|295968246|gb|EFG81495.1| tetrahydrofolate synthase [Corynebacterium ammoniagenes DSM 20306]
          Length = 556

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+      ++D AH  +    + K + R     R+I V G  GD+D+     
Sbjct: 413 PGRLERVRTSPT---TFIDAAHNPHGAIALGKALDRDFDFARLIGVVGVLGDKDELG--- 466

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +         ++T + +PR+ D  ++        G        +   A   A+E+   
Sbjct: 467 ILQALEPFLSEVVITQNTSPRALDAYELAETARDVFGEERVYVADDLPAAYAQAVELAED 526

Query: 459 QDV-----LVVAG 466
            ++     +V+ G
Sbjct: 527 AEIQSGSGIVITG 539


>gi|255022144|ref|ZP_05294147.1| Dihydrofolate synthase / Folylpolyglutamate synthase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968408|gb|EET25967.1| Dihydrofolate synthase / Folylpolyglutamate synthase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 437

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/399 (14%), Positives = 124/399 (31%), Gaps = 47/399 (11%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R  ++     +  + P  ++ V GT+GK S  ++++ + +++G                +
Sbjct: 28  RAAMAEL--EIAPRQPWPVITVAGTNGKGSTVAYLESLYRQAGYRVAAYTSPHLWRFVER 85

Query: 159 DNRLTT---------------------PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
                T                     P   +    L+ L         +     G+   
Sbjct: 86  LRIDGTVLTEGQWLAALEEVAQDAGHIPLTYFELATLAALLLVRAAAPELLILEVGMG-G 144

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RLD +  +    + +    +D+ Q       A  R    +L +  P +    D     V+
Sbjct: 145 RLDAVNAVHPDLSIITTVDMDHQQWLGDSREAIGREKAGILRRGVPLLYGDADDPCTSVL 204

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
             A  +G  +  +G +     +  V  +  +                    ++       
Sbjct: 205 TAARASGAPIYLLGRELVVDPVAGVLHMGGECWHLPEPLWG-------GREQWDNLALAT 257

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVV--PGRFEF-VGTNSRGGRIYVDYAHTSNSLEMILK 374
           AA   +   + +A V    +       PGR +      S G  + +D AH   ++  +  
Sbjct: 258 AATRLLRERLPAAAVEPGADWRCPPRLPGRCQRLRPWGSDGPTLLLDVAHNPQAVRQLAS 317

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA-----IVTDDNPRSEDPEKIR 429
            +R     R+  +F    D+D             LA +      +   ++ R+     + 
Sbjct: 318 VLRRHPGARVYALFNLLADKDLD------ACLAPLAGLVQHWFPVALPESARTRPWPDLL 371

Query: 430 AEI-IHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAG 466
           A +   G+     + G+   ++  A   L   D+++  G
Sbjct: 372 AALDTRGLTWTAVEGGDCSASLEAACAGLGAGDLVLCFG 410


>gi|222054964|ref|YP_002537326.1| FolC bifunctional protein [Geobacter sp. FRC-32]
 gi|221564253|gb|ACM20225.1| FolC bifunctional protein [Geobacter sp. FRC-32]
          Length = 424

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 107/382 (28%), Gaps = 24/382 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS----FAQ 158
           +L  +    +     + V GT+GK S + F+  +    G           IS        
Sbjct: 27  ALLQALDNPQSTFKSVHVAGTNGKGSTSCFMASMLAEGGYRVGLFTSPHLISFTERIRIN 86

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSV---EASSHGLDQHRLDGIKLIAGSFTNLGR- 214
              +     + L + +   +    T   +    A  H  +Q     +       +     
Sbjct: 87  GMEIFEEDVVRLGQRVLSAAPAETTFFEMVTAMACLHFAEQKVDLAVMEAGMGGSFDATN 146

Query: 215 --DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             D I    T  +  +++             A I           +     G   +    
Sbjct: 147 ALDGILSVITPISIDHSEYLGSSIAAIAREKAGIIKAGRPVVISSQEPDARGELEMRCRE 206

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
               ++           +  +S +G         PG    Y    AA    A+       
Sbjct: 207 LDSPLYCCGRDFDAEWLENGLSYKGGAISLAGLRPGLCGSYQKFNAAVALAAVEALGQAG 266

Query: 333 LEHLEKLH-------VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
                            PGR E     +   RI +D AH       +   +  I   R++
Sbjct: 267 FSMAMTAMSAGIEVAKWPGRME---MLNTSPRILLDGAHNPAGSAALAGALSEIPRRRLL 323

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           ++ G  GD+D G   I+G I    AD    V    PR+    ++            + G+
Sbjct: 324 LIVGVMGDKDLGG--ILGPIL-PFADEVFAVAPLLPRALPAAELAEFCRRQGLMAHDAGS 380

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
               +  A       D+++V G
Sbjct: 381 VTAGLAAARSRAGADDLILVCG 402


>gi|74314710|ref|YP_313129.1| putative ligase [Shigella sonnei Ss046]
 gi|73858187|gb|AAZ90894.1| putative ligase [Shigella sonnei Ss046]
 gi|323166720|gb|EFZ52478.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 457

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 104/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+ SA     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVASADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|257870256|ref|ZP_05649909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
 gi|257804420|gb|EEV33242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
          Length = 458

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 96/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++ +       TN+   H+DYH  +  Y  AK RL + +  ++   I 
Sbjct: 168 MELSSFQL--MGIETLHPKIAVITNIYEAHLDYHGNRSEYVRAKWRLQQNMTAEDFLVIN 225

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +        +++ +     +V+    Q K             +   I            +
Sbjct: 226 WNQPE----LVELSQQTKAKVIPFSTQQKVAGAYLFEEQLYFKDEAIMP-----VSELGV 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A  +    GI +  +++ L     VP R ++V T           A  S
Sbjct: 277 PGSHNVENALAAIAVAKLEGIANEAIVQALHTFSGVPHRTQYVDTIEGVRFFNDSKATNS 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L   +       +++   G DR      ++  +    A +          +  E
Sbjct: 337 LATEMALGGFQ----KDQLILLAGGLDRGNSFDELIPSLQDLKAIVLF-------GQTKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+       GI       +   A+  A ++    D +++
Sbjct: 386 KLAEAARKAGIKTIKLTEDVTTAVPLAYQLSQPGDTVLL 424


>gi|251779235|ref|ZP_04822155.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083550|gb|EES49440.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 458

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 112/358 (31%), Gaps = 43/358 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I  +TG+ GK++  + + ++ Q  G  ++  G               TP   
Sbjct: 111 FVRYCKAKIYGITGSDGKTTTTTIISKMLQEEGYKTWVGGNIG------------TPLFA 158

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            + +  +         V +E SS  L       + +     TNL  +H+D H+  Q Y +
Sbjct: 159 QIEEIKAEDR------VVLELSSFQL---MTMNLPMDIAVCTNLAPNHLDMHKDMQEYID 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F       +  +            +     G    + G   +F   ++V      
Sbjct: 210 AKKNIFLYQDTTNTLVVN----------RENEITYGFEAEAKGVVREFSSKREVKEGAYY 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   + + GK+      +           +AA +     +    + +  E  + V  R E
Sbjct: 260 KDGILYLSGKEVCKKDNIVIKGMHNVENYLAAFIATKDDVSIENMKKVAESFNGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V   +         A +       LK        + +++   G D+     P+      
Sbjct: 320 LVREINGVKYYNDSIASSPTRTLAGLKAFD-----KKVILIAGGYDKHLLFEPL-ANQGY 373

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--GIP-GFIEKGNRIEAIRTAIEMLNKQDVL 462
                 I+       E  + +  ++    GI     E     EA++ A  +  + D++
Sbjct: 374 PYIKELILLGQT--KEKIKDVFKDLEASKGIKINISEVSTLEEAVKKAQYLAKQGDII 429


>gi|123966762|ref|YP_001011843.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9515]
 gi|158512733|sp|A2BY75|MURD_PROM5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|123201128|gb|ABM72736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 477

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 115/387 (29%), Gaps = 44/387 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V+S A  +   +        I       + L             N + +TGT+GK++V
Sbjct: 82  AVVISPAIPIDHKTIIKLKEKGI-------EVLGEVNIAWESLKNINWIGITGTNGKTTV 134

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + + L +   G   T                 L K    + S+ +  +  E 
Sbjct: 135 THLLSHILRTNNLLAPFAGNIGTP----------------LCKIAYSIKSKNIDWLVAEL 178

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ ++   L  IK   G +T    DH+D H+T   YF        +             
Sbjct: 179 SSYQIEIATLC-IKPKIGIWTTFTADHLDRHKTLDNYFK-IKNSLLKQSEFRIYNYDDIH 236

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
              + + + +                   +     I  +Q+  +S++             
Sbjct: 237 LRENFKSLSKGIWITTSSKQSDLDHCDYWINNEDFIVERQENLLSLKNFKLKGNHNT--- 293

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L+A      IG+    +   L     +P R E +  +++   I    A   +S 
Sbjct: 294 ---QNLLLAIAAARKIGLSPEKIKNALLSYEQLPHRMETIYQSNKLEIINDSKATNFDSS 350

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +K I+         +   GG    G       I    A    +       E  + ++
Sbjct: 351 TAGIKAIKGAP------IIISGGKLKSGSYIEWVNIINKKAKAVFL-----FGESSQTLK 399

Query: 430 AEIIHG--IPGFIEKGNRIEAIRTAIE 454
             I+ G          +  E I     
Sbjct: 400 KLILEGGFKKDIFIFNDLSEVINYVYS 426


>gi|70726733|ref|YP_253647.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus haemolyticus JCSC1435]
 gi|81174951|sp|Q4L5N4|MURD_STAHJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68447457|dbj|BAE05041.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 449

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 125/353 (35%), Gaps = 48/353 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TGT+GK++ +S +  + ++S L+    G    ++S                   
Sbjct: 111 APIIAITGTNGKTTTSSLIGDMFKKSRLTGRLSGNIGYVASKV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGL---DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
               +    ++  E SS  L   +Q+R           TN+   H+DYH+T + Y NAK 
Sbjct: 154 -AQETSPNEYLITELSSFQLLGVEQYR-----PHIAIITNIYSAHLDYHETLENYQNAKK 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           ++++     +     Y    + + +++  +     +     Q       K   I  +   
Sbjct: 208 QIYKNQTENDYLICNY----HQRHLIESENLKAKTLYFSTQQEVDGIYIKDGFIVYQGIR 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+++         L       N L A    I  G+    +++ L     +  R +++GT
Sbjct: 264 IINIDDLVLPGEHNL------ENILAAVLASILAGVPIKAIIDSLTTFSGIDHRLQYIGT 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           N          A  + + +  L + +       IV    G DR      ++  +      
Sbjct: 318 NRTNKYYNDSKATNTLATQFALNSFKQ-----PIVWLCGGLDRGNDFDELIPYMKNVRVM 372

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +          +  EK            ++  +  +A++   +++   DV+++
Sbjct: 373 VVF-------GQTQEKFAKLGNSQGKLVVKATDIEDAVKKVQDVVEPNDVVLL 418


>gi|329890779|ref|ZP_08269122.1| mur ligase middle domain protein [Brevundimonas diminuta ATCC
           11568]
 gi|328846080|gb|EGF95644.1| mur ligase middle domain protein [Brevundimonas diminuta ATCC
           11568]
          Length = 493

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 65/174 (37%), Gaps = 16/174 (9%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NAL A G   A+G+     +  LE    +  R E VG    G  +  D+AH
Sbjct: 307 NVPGAHNVANALAALGAVKALGVGMDQAVAALETFSGIRRRLEVVG-ARNGVTVIDDFAH 365

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIV------ 415
             + +   LK +     GR++++F   G    +   +  I G   L   D  ++      
Sbjct: 366 NPDKIAATLKTLHAFD-GRLLILFQPHGFGPLKLMQREFIEGFAGLMRHDDVLLMPEPVY 424

Query: 416 ---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              T D  RS   E I   +            R +     +E+    D +VV G
Sbjct: 425 YGGTTD--RSVGSEDIAVGVRAAGRQAQALATRADCGDRIVEIAQPGDRIVVMG 476


>gi|171742518|ref|ZP_02918325.1| hypothetical protein BIFDEN_01630 [Bifidobacterium dentium ATCC
           27678]
 gi|171278132|gb|EDT45793.1| hypothetical protein BIFDEN_01630 [Bifidobacterium dentium ATCC
           27678]
          Length = 532

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 118/429 (27%), Gaps = 44/429 (10%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V SSA    +    A   +   I+   +    L            +  + V G  
Sbjct: 99  GARTVVFSSAIKPDNPEIVAAYEAGERIVHRSDILALL---------MQSKRAVTVAGAH 149

Query: 125 GKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GK++ +S +  I   +G       S    G          D        + +A+A     
Sbjct: 150 GKTTTSSMLAHILVNAGEGELADPSYAIGGSIQGKDGATLDGGHAGKGSVLVAEADESDG 209

Query: 179 SQGVTHVSVE----ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S    H  +     A +  LD +  +     A                      A +R  
Sbjct: 210 SFAKYHPEIAIITNAEADHLDHYGTEAKYRAAFVEHAGCAGKAVIMCGDDDGALAVLRAL 269

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  + +              ++       G   + +  + +         I +     + 
Sbjct: 270 KTEVARHVVVYSTQPSEDLGDL------NGAAHVRIESESESTQSGAEHFILHLPAGLVD 323

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           VE +       +PG     NA  A    + +G+D                RF+  G+ ++
Sbjct: 324 VEERRVPVTLTVPGIHNARNATAALLAAVMLGVDVERAAAAATSFLGAARRFQIRGSVNQ 383

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DYAH    +  +L   R       I V        R         +     AD 
Sbjct: 384 -VTVIDDYAHHPTEIAALLDAARRRYPEAGIHVIFQPHLFSRTMFFAREFAEALAK-ADD 441

Query: 413 AIVTDDNPRSE--------DPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQ 459
            IVT   P  E         P+ I  E +               +   A +  +   +  
Sbjct: 442 VIVTGIFPAREKQEDFPTVSPDTIVNEAVKLEHEPADDWIRGVDDMRTAAQMMVMRAHHG 501

Query: 460 DVLVVAGKG 468
           DV+   G G
Sbjct: 502 DVIFTVGAG 510


>gi|323701286|ref|ZP_08112961.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533888|gb|EGB23752.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 462

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+               N+  DH+D H +   Y  AK  +F     ++  A++ 
Sbjct: 172 EVSSFQLET--TQSFAPRVAVVLNVTPDHLDRHGSMAEYIRAKSLIFAHQDQEDW-AVLN 228

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++E+     +            K I+++    +   Q VT             +P
Sbjct: 229 YDDPVTREMAADCPSQVLFFSRQHILEKGIYVQDGKIMVADQGVTEITPVNTL----RIP 284

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A     A+GI +  +   LE    V  R E+V T      I        +
Sbjct: 285 GAHNLENALAAVAAGYAMGIAATDLARTLESFAGVAHRLEYVATIDGVKYINDSKGTNPD 344

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA-IVTDDNPRSEDPE 426
           +    L            ++   GG   + K     + A  + +   ++          E
Sbjct: 345 AAIKALDAYNE------PIILIAGG---KNKGSDFTQFARKIKEKVRVLIVLGLHGYQIE 395

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +   G    ++  +  +A+R A +     +V+++
Sbjct: 396 AAARD--QGFTNILQAQDYPQAVRLAHQQARPGEVVLL 431


>gi|290890680|ref|ZP_06553750.1| hypothetical protein AWRIB429_1140 [Oenococcus oeni AWRIB429]
 gi|290479655|gb|EFD88309.1| hypothetical protein AWRIB429_1140 [Oenococcus oeni AWRIB429]
          Length = 438

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 112/390 (28%), Gaps = 56/390 (14%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           Y  +     +  N P++     +  L         +    +LAVTG++GK++  + + ++
Sbjct: 70  YEKEIIKKALNLNIPVI--TEVQVAL--------DQFKGEVLAVTGSNGKTTTTTLIGKM 119

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +   +     G      S                     LS      + +E SS  L  
Sbjct: 120 LKADNVDVKVGGNIGIPVSELM------------------LSDSQPRVLMLELSSFQLL- 160

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                IK      TNL   HID+H T++ Y  AK  + +     +   +  +        
Sbjct: 161 -GAQNIKPKIAVITNLFSSHIDFHHTRENYLRAKFSITQHQTKDDYLVLNDSSIDSKDF- 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                    +               V    N   +    E         L GE  + N L
Sbjct: 219 --------AKRSQADDYYFSPTNTSVNTYVNDGTIYFDDEKIIDLSKVVLVGEHNLENIL 270

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A       G+ +  + + L     +  R E VG            A    + +  L + 
Sbjct: 271 AAVTAAKIFGVSNRAIEKVLTSFKGLEHRLEAVGVIKERTIYNDSKATDIEATQKALASF 330

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN---PRSEDPEKIRAEII 433
           +       I +   G DR      ++      ++ I      N      E          
Sbjct: 331 KE-----PINLIAGGLDRGDDLNRLVPNFKNVVSLITYGQTKNKLQSAGE---------K 376

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            GI   +      EA+  A E+     VL+
Sbjct: 377 AGIKQTVVVDTLKEAVAKAKELSRPGQVLL 406


>gi|229815105|ref|ZP_04445442.1| hypothetical protein COLINT_02147 [Collinsella intestinalis DSM
           13280]
 gi|229809335|gb|EEP45100.1| hypothetical protein COLINT_02147 [Collinsella intestinalis DSM
           13280]
          Length = 474

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 125/413 (30%), Gaps = 49/413 (11%)

Query: 70  AIVVSSAYSLQDFSA--TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            +VVS+A    +           P+         L          +    +A  GT GK+
Sbjct: 79  VVVVSTAIPETNPELVRARELGIPVWHRAKMLSALG---------YGRTTVACAGTHGKT 129

Query: 128 SVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           + +S V  +  R     SF IG    +  +  + +        +    S  S        
Sbjct: 130 TTSSMVATMLDRMELDPSFLIG--GVVEGYGTNGKNGDGEYFVVEADESDSSFLY----- 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                          +       TN+  DH+D++ + +         F  L+ ++   I+
Sbjct: 183 ---------------LDPHVVIVTNIEADHMDHYDSLEQIE-ETFCTFMGLVGEDGTVIV 226

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKF-IHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             +D    E+ +                          A  +   VT+    K    +  
Sbjct: 227 CGEDPRLVELARSCGRTVFTYGEGDGMDVCLNPAATRHAFGSDFTVTLPDGSKREVSIKN 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
            PG   + NA  A      +G+++    E L        RF  VG   RG  +  DY H 
Sbjct: 287 NPGRHNMLNATAALTAAYVLGLNTERAAEALSTFEGARRRFTQVG-EVRGVTLVDDYGHH 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSE 423
              +   L   +++    + VVF     R    + +        AD    I+ D  P  E
Sbjct: 346 PTEVRATLAAAKSLDFQHVDVVF--QPHRYSRLQALCDDFVDAFADADTVILVDVFPAGE 403

Query: 424 DP------EKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            P      + +  +I    PG       +    +    ++    D+L+  G G
Sbjct: 404 MPIPGVTSKMLADKIRAAHPGKSVYYVSDHAALMARIDDVAQAGDLLITMGAG 456


>gi|118579591|ref|YP_900841.1| FolC bifunctional protein [Pelobacter propionicus DSM 2379]
 gi|118502301|gb|ABK98783.1| FolC bifunctional protein [Pelobacter propionicus DSM 2379]
          Length = 425

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E +       R+ +D AH     + + + +      R+++V G   D+D     I
Sbjct: 284 WPGRMELIPG---PPRLLLDGAHNQAGAQALAEALGDYCYDRLLLVAGVMADKDV--HAI 338

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M  +A  +     VT    R+ D  ++   +       +  G   + I  A    + QD+
Sbjct: 339 MAPLAPLVTRGYCVTPSMERALDDTELARLLAGLGVEALASGGVADGIAAARNEAHSQDL 398

Query: 462 LVVAG 466
           +++ G
Sbjct: 399 ILICG 403


>gi|294828013|ref|NP_712232.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|293385859|gb|AAN49250.2| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 488

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 138/424 (32%), Gaps = 36/424 (8%)

Query: 69  EAIVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
              V SSA  L +            P++      + L    S       +  +++ G+ G
Sbjct: 67  SIAVYSSAIRLDNHPLVKKFKEKGIPLIHRS---ELLHKIMSE------KKQISIAGSHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQI-----GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K++  +    + ++ G+S   +                                +   ++
Sbjct: 118 KTTTTAMTAFLLEKCGMSPSVMVGGEVAFLGGKGGVWGKGEWGVFESDESDGTFNNHYAE 177

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSF--------TNLGRDHIDYHQTQQAYFNAKMR 232
                +V+       Q R + +                NL    I          +  + 
Sbjct: 178 MRILTNVDEDHLDYYQTRENLLNAFVRYMEGASRRLILNLDDIGIRDSIKLIHDHSKILG 237

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             +   P E  + +  +   SK+ +K +  AG    S    G     K V        + 
Sbjct: 238 FSKYKNPDEFTSGLSRNSEKSKDDLKNSDIAGAEKTSKVLYGIDPD-KIVYYTIQSGILY 296

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              + K++ F    PGE  + NAL A   C   GI  + ++  + +   V  R E++G +
Sbjct: 297 FYFQKKEYSFSLKYPGEHYLKNALAAILACFETGIPLSDLVSKISEYSGVNRRLEYLG-S 355

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
             G  +Y DY H    ++ +++++  +   GR +++F      R Q       +      
Sbjct: 356 KNGIEVYDDYGHHPTEIKAVIQSMEELKKEGRAVILFQPHRYTRTQNLYKEFAESLDS-G 414

Query: 411 DIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +I  +       EDP      ++ ++ +   P  I      E I T    L   D LV  
Sbjct: 415 EIVFLLPIYSAGEDPIYGVKAELISDFMK-FPAKILPKEISEGIFTLKSFLKPGDKLVTL 473

Query: 466 GKGH 469
           G G+
Sbjct: 474 GAGN 477


>gi|78778407|ref|YP_396519.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
 gi|78711906|gb|ABB49083.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 469

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 74/221 (33%), Gaps = 22/221 (9%)

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCI 323
            +            +      +  TI    ++ +F      P+PG   + N   A     
Sbjct: 237 NNWSNITANKAAYAIIPTEINESHTIGKYYENGNFISSLDIPIPGLHNLSNITAAIAASR 296

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI---- 379
            IG+D   + ++++ L +   RFEF G       +Y DYAH  N ++  +K  R      
Sbjct: 297 MIGVDFLEIKKNIKYLKLPKKRFEFRGQVDE-RNLYDDYAHHPNEIKATIKLGRLFINHK 355

Query: 380 -----TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------ 427
                 +GR+I +F      R +             ADI  +T      E  E       
Sbjct: 356 RNNESHNGRLIAIFQPHRYSRVKQFAKEFALELSK-ADIIYITSIYAAGEGNEDNINSTI 414

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           I   I           N  E  +   E+  K D+++  G G
Sbjct: 415 ITDLIYKQNKNVSYINNYHEITKKFYELTQKGDLILNMGAG 455


>gi|45657726|ref|YP_001812.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600966|gb|AAS70449.1| UDP-N-acetylmuramate-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 490

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 138/424 (32%), Gaps = 36/424 (8%)

Query: 69  EAIVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
              V SSA  L +            P++      + L    S       +  +++ G+ G
Sbjct: 69  SIAVYSSAIRLDNHPLVKKFKEKGIPLIHRS---ELLHKIMSE------KKQISIAGSHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQI-----GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           K++  +    + ++ G+S   +                                +   ++
Sbjct: 120 KTTTTAMTAFLLEKCGMSPSVMVGGEVAFLGGKGGVWGKGEWGVFESDESDGTFNNHYAE 179

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSF--------TNLGRDHIDYHQTQQAYFNAKMR 232
                +V+       Q R + +                NL    I          +  + 
Sbjct: 180 MRILTNVDEDHLDYYQTRENLLNAFVRYMEGASRRLILNLDDIGIRDSIKLIHDHSKILG 239

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             +   P E  + +  +   SK+ +K +  AG    S    G     K V        + 
Sbjct: 240 FSKYKNPDEFTSGLSRNSEKSKDDLKNSDIAGAEKTSKVLYGIDPD-KIVYYTIQSGILY 298

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              + K++ F    PGE  + NAL A   C   GI  + ++  + +   V  R E++G +
Sbjct: 299 FYFQKKEYSFSLKYPGEHYLKNALAAILACFETGIPLSDLVSKISEYSGVNRRLEYLG-S 357

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGG-DRDQGKRPIMGKIALDLA 410
             G  +Y DY H    ++ +++++  +   GR +++F      R Q       +      
Sbjct: 358 KNGIEVYDDYGHHPTEIKAVIQSMEELKKEGRAVILFQPHRYTRTQNLYKEFAESLDS-G 416

Query: 411 DIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +I  +       EDP      ++ ++ +   P  I      E I T    L   D LV  
Sbjct: 417 EIVFLLPIYSAGEDPIYGVKAELISDFMK-FPAKILPKEISEGIFTLKSFLKPGDKLVTL 475

Query: 466 GKGH 469
           G G+
Sbjct: 476 GAGN 479


>gi|88704098|ref|ZP_01101813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Congregibacter
           litoralis KT71]
 gi|88701925|gb|EAQ99029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Congregibacter
           litoralis KT71]
          Length = 456

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 115/350 (32%), Gaps = 40/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ +TG++ KS+V   +  + + +G ++   G                   + L    
Sbjct: 117 APVIGITGSNAKSTVTEMLGAMVRAAGYTAGVGGNLGVP-------------ALDLLDDR 163

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           + L         +E SS  L+  R   + L   +  NL  DH+D H +   Y  AK    
Sbjct: 164 NEL-------YVLELSSFQLE--RAGALNLQVATVLNLTPDHLDRHGSMPRYHQAK---- 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +       +   DD  +   +      G + LS       +    +  I  +  +   
Sbjct: 211 HRIFNGCKKVVYNLDDPLTIPPLAA----GRQQLSWRLGEPDLQGFGLRDIDGEPTLVHG 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         LPG   + NAL A  L  AI +    ++  L +   +  R E V  +  
Sbjct: 267 FEPLLKASELALPGRHNLANALAALALGSAIDLPREAMMTVLREFSGLAHRCELVLESGG 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              I    A    +       I  +     +++   G D+    R +   +A    D  +
Sbjct: 327 VRWINDSKATNVGAALA---AIEGLGESHRLILIAGGRDKGADFRVLKPAVAA-HCDKVL 382

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +        +   + AE +      +       A+ +A  +    D++++
Sbjct: 383 LIG------EAAPVIAEALGDAGDLLSVDTLEAAVASARAVAKPGDIVLL 426


>gi|260663469|ref|ZP_05864359.1| folylpolyglutamate synthase FolC [Lactobacillus fermentum 28-3-CHN]
 gi|260552010|gb|EEX25063.1| folylpolyglutamate synthase FolC [Lactobacillus fermentum 28-3-CHN]
          Length = 426

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 18/182 (9%)

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI----DSALVLEHLEKLHVVPGRFE 347
            + +  + F     L G +Q  N   A  +   +          +LE + +    PGR E
Sbjct: 237 KVKMGEEQFTCPCNLHGHYQTENLTTALAIVEQLRQGGVTIDQTMLEKVLQRVTFPGRME 296

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIA 406
                     + +D AH  ++ + ++  I+   + R + +V G   D+D  +   M  + 
Sbjct: 297 ---AIDHDPLVILDGAHNPDAAKQMVATIQEDFADRPVTMVLGFLADKDVER---MVTMY 350

Query: 407 LDLADIAIVTD-DNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +AD  I T  DN  R+ D   +   +     G     +  EA+  A E+     V++V
Sbjct: 351 QQVADHLIFTTPDNHGRAMDSWPLATAM-----GHEWAPDAREALELARELTPTNGVIIV 405

Query: 465 AG 466
            G
Sbjct: 406 TG 407


>gi|239994437|ref|ZP_04714961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii ATCC 27126]
          Length = 510

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 132/427 (30%), Gaps = 63/427 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V+S   +L      +     + V+ +   F  L AS       + ++ +TG++GK
Sbjct: 76  GVDTLVLSPGLALDIEQVALAQKCGVEVIGDVELFARLNASTSDATPAKRVVGITGSNGK 135

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++V   V  + +  G+ S + G                                    V 
Sbjct: 136 TTVTLLVNHLLKNCGVKSIEAGNVGRPVL--------------------EALQSDADVVV 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE------LLPK 240
           +E SS  L+      + L A +  N+  DH+D H T +AY +AK R+F+           
Sbjct: 176 MELSSFQLET--TSSLVLEAATVLNISDDHLDRHGTLEAYIDAKHRIFDNAKSAVVWRDG 233

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA---------------- 284
           E  A        +K +      +     +   +        V                  
Sbjct: 234 EFVAPYEQLITDAKGIAASNAVSDGESNAASNEESLASKNIVEYGLGESTTGFAIASFDG 293

Query: 285 ------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                       +T   E         L G   V N + A G+C+ +G+  AL ++HL  
Sbjct: 294 DDSARDDEQSLYITFKDEKLIALSDIHLAGMHNVLNIMAALGICLQLGVSPALAVKHLRS 353

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R   +   +    I    A    +    L+ +     G++I++   GGD     
Sbjct: 354 FKAAPHRCVEIARVNDIRYIDDSKATNIGATVAALEGLAPTIQGKLILI--AGGDAKGAD 411

Query: 399 RPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
              +             +  D    E                       +A++ A  +  
Sbjct: 412 IASLSPYLTKYVSHVFALGKDAHLFE----------KSFAHTTRVATMKDAVKAATRLAA 461

Query: 458 KQDVLVV 464
             DV+++
Sbjct: 462 PGDVVLL 468


>gi|193214310|ref|YP_001995509.1| FolC bifunctional protein [Chloroherpeton thalassium ATCC 35110]
 gi|193087787|gb|ACF13062.1| FolC bifunctional protein [Chloroherpeton thalassium ATCC 35110]
          Length = 432

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 6/167 (3%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             P  G +Q  NA +A  L   +G D   +   L  +H   G    +        + +D 
Sbjct: 247 KVPFSGSYQAENAQLAILLAEEMGADELQIRNGLANVHQNTGHRARLERVQEKPVVLLDV 306

Query: 363 AHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           +H    ++  +K I        R+ VVF    ++D      M     +  D   V++   
Sbjct: 307 SHNPPGMQATVKTISHYRKNYARVAVVFAALQEKDV---ASMVAALKNGCDKIFVSELKI 363

Query: 421 RSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               P     +I            N ++AI  A   + +  ++++ G
Sbjct: 364 EKALPATEIHQICEAQDVRAEVFPNPMDAIAAAKAFVGEDGLVLITG 410


>gi|333029406|ref|ZP_08457467.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides coprosuis DSM
           18011]
 gi|332740003|gb|EGJ70485.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides coprosuis DSM
           18011]
          Length = 457

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 91/274 (33%), Gaps = 13/274 (4%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +       T+   DH+D + TQ+AYF +       +       I         ++  R
Sbjct: 177 HALHPFISVITSTDPDHLDIYGTQEAYFESFEHYTSLIDSDGILVIRKGL-----KIHPR 231

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                       ++G F     +          +    +  +    +P    + N++ A 
Sbjct: 232 LKEGVKTYTYSAHEGDFHAENIIIENGEIFMDFVGPNVRINNIQLGVPISINIENSVAAL 291

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +          + + +     V  RF+FV   +    +  DYAH    ++  + +I+ +
Sbjct: 292 AVAHLCAAKDQELKKAMGTFKGVERRFDFV-LKNDKHVLINDYAHHPAEIKQSIISIKEL 350

Query: 380 TSGRII-VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI- 436
              R +  VF      R +       +    L+D  I+ D  P  E+P +    ++    
Sbjct: 351 YPKRKLTTVFQPHLYTRTKDFYKDFAESLS-LSDEVILLDIYPAREEPIEGVTSMLIYSN 409

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                I+     E I   +  L+  D+++  G G
Sbjct: 410 LRNSVIKHTATKENIVNLLSTLST-DIVLTLGAG 442


>gi|312880133|ref|ZP_07739933.1| FolC bifunctional protein [Aminomonas paucivorans DSM 12260]
 gi|310783424|gb|EFQ23822.1| FolC bifunctional protein [Aminomonas paucivorans DSM 12260]
          Length = 443

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 122/404 (30%), Gaps = 52/404 (12%)

Query: 96  DNTRKFLSLFASRLYGK-HPENILA---VTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
              R  L+  +  L G  HPE       + GT+GK S A+ +    + +G          
Sbjct: 20  PGIRPGLARLSRLLQGLGHPERRFPSVLLVGTNGKGSTAATLSSCLREAGYRVALYTSPH 79

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--------GLDQHRLDGI- 202
             S   +      P P    +         +      AS           L  HR+  I 
Sbjct: 80  LESLGERLLLNGDPLPSSSWRTSLERIEPLLREDRRLASDRPSYFEILTALAFHRIAEIA 139

Query: 203 ---------KLIAGSFTNLGRDHIDYHQTQQAYFN---------AKMRLFEELLPKESPA 244
                           TN+  D      T     +         A       +L    PA
Sbjct: 140 PDLAVVEAGMGGRLDATNVLGDVRATVCTPLGLDHQEYLGGTLEAIAAEKFAVLRPGVPA 199

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +         E  ++       +  +      + L  +     +               F
Sbjct: 200 LYAGGGTGLNERFRKQAARVGALPWIHETACRLDLLDLTLQGVRFHRECDGRPPLRHLEF 259

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDS----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           PLPG  Q  NA +A G    + +         L    +    PGR E+      G  + +
Sbjct: 260 PLPGLHQPTNASLALGALEHLSVSFPRLGEEALRKGLRSTRWPGRMEWFPRGEGG--LLL 317

Query: 361 DYAHTSNSLEMILKNIRTITSGR--IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           D AH  + +E + +++  + + R    +VF   GD++    P + ++A  L +    T  
Sbjct: 318 DGAHNPHGVEALARSLEAMRTRRSSWGLVFAAMGDKEIA--PSLRRLA-PLFETLWCTT- 373

Query: 419 NPRSEDPEKIRAEIIHGI-------PGFIEKGNRIEAIRTAIEM 455
            PR   P  + A+ +  +            + +  EA+  A+  
Sbjct: 374 VPRC--PRAMAADALARVARDSGWADRVEVEPDPAEAVSQALSR 415


>gi|99080520|ref|YP_612674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
 gi|118595693|sp|Q1GIV4|MURD_SILST RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|99036800|gb|ABF63412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp.
           TM1040]
          Length = 467

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 121/428 (28%), Gaps = 76/428 (17%)

Query: 65  AQGA----EAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP-- 114
            QGA     A++VS   +      +          + V ++   F    A+  + +    
Sbjct: 60  KQGAFDGISALIVSPGIAHLYPKPNPVIRAALVAGVPVDNDIGLFFRSVATSEWDEFDTA 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AVTG++GKS+  + +  I +  G +S   G                   + L    
Sbjct: 120 PKVIAVTGSNGKSTTVALLHHILEHVGRNSQMAGNIGRGVLDIDPPVDGGVVVLEL---- 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          SS+  D  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 176 ---------------SSYQTDLAR--ALTPDVAVFTNLTPDHLDRHAGMGGYFAAKRRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            E  P  +       D      +    + G     V        L          +    
Sbjct: 219 AEGGPDRAVI---GVDEDEGLFLAGQLSEGESDDRVIRISARQKLSGGAGWTVFARKGFL 275

Query: 295 VEGKDFDFLFPL--------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
            E +       +        PG     NA  A      +G+   ++   +     +P R 
Sbjct: 276 SEYRKGRQAGSIDLRDIPGLPGAHNHQNACAAYAAARTLGLAPRVIEAAMRTYPGLPHRS 335

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC---------GGDRDQG 397
           + +        +    A   +S    L   + I   R I              G   D  
Sbjct: 336 QRIAEADGVSYVNDSKATNVDSAAKALSAFKNI---RWICGGLEKEGGLEALKGATDDVL 392

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           K  ++G+ A   A    V                               +A+  A+    
Sbjct: 393 KAYVIGREAAQFAMQLDV----------------------EAEVCTTMAQAVSRAMAEAG 430

Query: 458 KQDVLVVA 465
             + +++A
Sbjct: 431 PGETVLLA 438


>gi|158520484|ref|YP_001528354.1| FolC bifunctional protein [Desulfococcus oleovorans Hxd3]
 gi|158509310|gb|ABW66277.1| FolC bifunctional protein [Desulfococcus oleovorans Hxd3]
          Length = 434

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 16/132 (12%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            P R E V  +     I +D AH   + + +   +    +GR I +     D D+  R  
Sbjct: 290 WPARLEIVSDSPT---ILIDGAHNLQAAKNLAAFLSEQMAGRKITLVAGILD-DKPYRA- 344

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEM 455
           M +  + L D  I+T    R++    I  EI+       G           +A+  A+  
Sbjct: 345 MLRALVPLCDRVILT----RAQIGRAIAPEILEREARNLGATRTHVVDRVDKALAFALAH 400

Query: 456 L-NKQDVLVVAG 466
              K   + VAG
Sbjct: 401 TPKKSGAVCVAG 412


>gi|120600140|ref|YP_964714.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
 gi|120560233|gb|ABM26160.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
          Length = 464

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 105/355 (29%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSACLGESAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A      
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQKQFN 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +  +          +  + +         +      +       K  +       
Sbjct: 209 HLIRTVPGEGKIIWPVDAQSVKQTI--DMGCWSKQEHYHTAESITGWYGKALSDDCHCFE 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  + NA++A      +G+  +  +E L +      R E +G 
Sbjct: 267 VFFDGESQGVLEWDLIGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   LK +R  +   +IIVV     +  + G        ++  
Sbjct: 326 TVNGISVYDDFAHHPTAIATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + +     +   +   +      E +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMK---EAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVV 437


>gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
          Length = 458

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 138/422 (32%), Gaps = 66/422 (15%)

Query: 60  IPQAIAQGAEAIVVSS------AYSLQDFSATIRSNTPILVVDNTRKFLSLFASR---LY 110
             +   +G   ++  +       + +   + ++R +TP L+  N +K  +   S      
Sbjct: 55  AKELREKGVNLVLGENYMDSLNGFDVIFKTPSMRIDTPALI--NAKKQGAYITSEMEEFI 112

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              P  +  VTG+ GK++  + +  I ++ G  ++  G               TP    +
Sbjct: 113 KYCPAKVYGVTGSDGKTTTTTLIYNILKQQGYKTWVGGNIG------------TPLFTEI 160

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
            K  S         V +E SS  L       +       TNL  +H+D H+  Q Y ++K
Sbjct: 161 EKMKSDDK------VVLELSSFQL---MTMNVSPEVAVVTNLSPNHLDIHKDMQEYIDSK 211

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             +F+    +    +   ++  +    +            G   +F   +KV      ++
Sbjct: 212 KNIFKYQQSESLLILNRDNNLTNSMFNEAK----------GRVLEFSIKEKVKDGAYFEE 261

Query: 291 VTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
             + ++ K+                 L+AA   ++  ++   + +       V  R EF+
Sbjct: 262 NKLYIKEKEVCKLNEIQIKGMHNVENLLAAFCAVSDDVNIENMRKTAISFTGVEHRCEFI 321

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                        A + +     LK           V+   GG   +    ++ +   + 
Sbjct: 322 REIDGVKYYNDSIATSPSRTLAGLKAFEK------PVILIAGGYDKKIPLDVLAEEGYEN 375

Query: 410 ADIAIV---TDDNPRSEDPEKIRAEIIHGIPG------FIEKGNRIEAIRTAIEMLNKQD 460
               I+   T D        KI+      +         + + +  +A+ +A     + D
Sbjct: 376 IKALILVGATKD--------KIKDAFSKVMKKKNIEIPMVIEESLEKALSSARGFAKEGD 427

Query: 461 VL 462
           ++
Sbjct: 428 II 429


>gi|153812841|ref|ZP_01965509.1| hypothetical protein RUMOBE_03248 [Ruminococcus obeum ATCC 29174]
 gi|149831053|gb|EDM86142.1| hypothetical protein RUMOBE_03248 [Ruminococcus obeum ATCC 29174]
          Length = 433

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQG--K 398
             GR E V        + VD AH  + +E  ++          + ++F    D+D     
Sbjct: 294 WQGRMETVLPG-----VIVDGAHNEDGVEKFVETAVHFQKDYPLTLLFSAVDDKDYTDMI 348

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEML 456
           R I+GKI+       IVT      + P +  AEI    G P      +  EA + A+   
Sbjct: 349 RTILGKIS---FHHVIVTQVGGYRKVPAEKLAEIFREKGCPTAEACEDVEEAFKKALA-A 404

Query: 457 NKQD 460
             +D
Sbjct: 405 KGED 408


>gi|288939892|ref|YP_003442132.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
 gi|288895264|gb|ADC61100.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
          Length = 458

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 135/442 (30%), Gaps = 66/442 (14%)

Query: 34  SSDSRHIQAG-----------WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDF 82
            +DSR    G            +FV   G   D     P   A  A  +VVS    L + 
Sbjct: 43  VTDSRERPPGLDVLQSELPEVAVFVG--G--FD-----PDVFAA-ATELVVSPGVPLAEP 92

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
                    +  V +   F     + L         A+TG++GKS+V + V  + + +G 
Sbjct: 93  LIRQAIARGVPAVGDIELFAREIHAPLC--------AITGSNGKSTVTTLVGLMARLAGQ 144

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                G                   + L                VE SS  L+   +  +
Sbjct: 145 RVAVGGNLGEP-------------VLDLLAPDVER-------YVVELSSFQLET--VPSL 182

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           +  A    N+  DH+D +     Y   K R+++        A++  DD     ++     
Sbjct: 183 RADAAVVLNVSADHLDRYAGLDDYARTKARIYQG----ARIAVVNRDDP----IVAAMPR 234

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
              R +             V  +  +  +    E         LPG   + NAL A  L 
Sbjct: 235 DPEREIGFTLGVPEGSDFGVRVLEGQSWICQGEEPILPTAAIRLPGRHNLANALAALALA 294

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            A  I  A   E L     +P R EFV   +              +    L+ +      
Sbjct: 295 QASAIPMAGACEALRVFPGLPHRSEFVAERAGARWYDDSKGTNPGATIAALEGLIPEDGS 354

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
             +V+   G  +     P+   +      + ++  D P       + A  + G    I  
Sbjct: 355 GRVVLIAGGEGKGADFAPLRAAVERAARAVVLIGRDAP-------LIASALDGTVPLIRA 407

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            +   A+  A E +   D +++
Sbjct: 408 TDMDAAVALAAEHIEPGDCVLL 429


>gi|77361421|ref|YP_340996.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|122063255|sp|Q3IG02|MURD_PSEHT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76876332|emb|CAI87554.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 446

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 127/395 (32%), Gaps = 51/395 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S   SL   +     N  + V+ +         +R+  K    ++AVTG++GKS+V 
Sbjct: 75  IIISPGLSLTIPAIAKAINAGVEVIGDV-----ELFARINTKP---VVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +  QQ+   +G  +   G   T       + L+                       +E S
Sbjct: 127 TLAQQVLLAAGYKAALGGNIGTAVLDLLQSDLSNNDV---------------DVYVLELS 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD      ++ I+ +  N+  DH+D + + Q    A +     +    +  I  ADD
Sbjct: 172 SFQLDT--TTSLQPISATVLNVSEDHLDRYASYQ----AYIDSKLSIYNNAALVITNADD 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +    K   + G                 + A      VT             + G+ 
Sbjct: 226 EATHSKAKSQLSFGANQGDYSLGEYQQQTYFMQANKAFLPVT----------SLAVVGKH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL    L     I  A       + + +  R +FV   +         A    +  
Sbjct: 276 NYLNALAVMALLSPFNISKAQYSTAFSQFNGLAHRCQFVAERAGVKYFNDSKATNVGATI 335

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             + ++   T+G+ ++V   G  +      +            I    +           
Sbjct: 336 AAIDSLA--TNGQQLIVIAGGDAKGADLNAL-TPYLQQHVKALICFGKD---------AK 383

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +++          N  EA+  A ++    +++++A
Sbjct: 384 DLMALTNKSHLTNNMSEAVTLAKQLSEPGNIVLLA 418


>gi|319651887|ref|ZP_08006010.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2]
 gi|317396379|gb|EFV77094.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. 2_A_57_CT2]
          Length = 431

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 123/402 (30%), Gaps = 56/402 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +AY    ++    ++   P++      +FL  F            +AVTG  GK+S
Sbjct: 64  VIAGNAYPDTHEEIEEAMKLGLPVVR---YHRFLGDFMKNFTS------IAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + + +  +SF IG  +       +            +   +  S    +  + 
Sbjct: 115 TTGLLAHVMRGAKPTSFLIGDGTGKGDKEAEY-----FVFEACEYRRHFLSYYPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY    +  F+A  +     + K   A    
Sbjct: 169 ---------------------TNIDFDHPDYFANIEDVFSA-FQEMSWQVNKGIFACGD- 205

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                +++ K            G    F     V                   F  P  G
Sbjct: 206 ----DEQLQKIQAKVPVVFYGFGEDNDFQARNVVKTTEGTTFDVFVRNTFFETFSIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V N+L    LC    ID+ +V E L     V  RF      S+   I  DYAH    
Sbjct: 262 DHNVLNSLAVIALCHYEEIDAKIVQEQLLSFEGVKRRFSEKKVGSQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDP 425
           ++  ++  R       ++ VF      R Q         +L+LAD   + +      E+ 
Sbjct: 320 IKATVEAARQKYPEKDVVAVFQPHTFTRTQAFLDDFAS-SLNLADKVYLCEIFGSARENH 378

Query: 426 EKI-RAEIIHGIPGFIEKGNRIEAIRT-----AIEMLNKQDV 461
            K+   ++   IP          A+        I  +   D+
Sbjct: 379 GKLTIDDLKAKIPNAQILNEEETAVLRNHEDSVIMFMGAGDI 420


>gi|253576129|ref|ZP_04853461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844472|gb|EES72488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 476

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 134/422 (31%), Gaps = 58/422 (13%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
              I +G   +V +                 I VV        +         P  IL +
Sbjct: 68  DDLIHEGVSLVVKNPGIPYTAPPVARAIELGIEVVTEVEVAYLI--------SPAPILGI 119

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++  +++  + + +G+     G                     +    +   + 
Sbjct: 120 TGSNGKTTTTTWIGNMLEAAGMRPIVAGNIG------------------IPLCEAAEEAD 161

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               +  E SS  L   R    +       N+   H+DYH T   Y ++K +LF     +
Sbjct: 162 EGNWLVAELSSFQLKGTR--AFRPEVACLLNVAETHLDYHGTMDDYISSKAKLFAN-QRE 218

Query: 241 ESPAIIYADDAYSKEVMK------RAHNAGCRVLSVGYQGKFIHLKKVC----AIHNKQQ 290
              A++  DD   +E++          +    + S G   +  ++  V          + 
Sbjct: 219 TDRAVLNWDDPVCRELVPYIKAKLIPFSMTEELQSEGVYVEPAYIPDVEDGLARRIMYRG 278

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               V          LPG F + NAL A    IA G     + E L   H V  R E+V 
Sbjct: 279 ADGEVRVIIDIADIALPGRFNIENALAAVAAAIAAGAAPEALAEPLRTFHGVEHRLEYVD 338

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                       A  S +  M L  ++       IV+   G DR      ++      + 
Sbjct: 339 EKQGVVYYNNSKATNSKATVMALGALQA-----PIVLIAGGLDRGSDYMELLPVFKEKV- 392

Query: 411 DIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVL 462
             A+V       +  EKI     + G+   +              A++ A  +    D++
Sbjct: 393 -KAVVAM----GQTKEKIARVAELAGLSHIVLVDTVDSAADTLRAALKEAASLAEPGDIV 447

Query: 463 VV 464
           ++
Sbjct: 448 LL 449


>gi|92113241|ref|YP_573169.1| cyanophycin synthetase [Chromohalobacter salexigens DSM 3043]
 gi|91796331|gb|ABE58470.1| Cyanophycin synthetase [Chromohalobacter salexigens DSM 3043]
          Length = 879

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 108/362 (29%), Gaps = 23/362 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTGT+GK++    +  + +++G S       +       ++ +          A   L
Sbjct: 485 VAVTGTNGKTTTVRLISHLLRQAGRSVGMACTGA---IEIDNHVILRGDYSGPQAASIVL 541

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
               V +  +E +  G+ +  L   +   G   N+  DH+           A+ +     
Sbjct: 542 REPTVEYAVLEVARGGIMRRGLGFDECHVGVLLNIASDHLGESDIHTLDELARCKSVVID 601

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +S   +   D       +          ++  +   +                 +  
Sbjct: 602 AVGKSGTAVLNADDPRVLASREWARGDVIFFTLDPESPTVRAHVRDHGVAFTVHRDHIVM 661

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGID------------SALVLEHLEKLHVVPGR 345
           +       +                                   A +   L+  H  PG+
Sbjct: 662 RQGHVEAEIIPVANAPITFEGLASFNVANALAASAAAHALGLGIADIQRGLQTFHPTPGQ 721

Query: 346 F--EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
                   ++ G ++ +DY H   +LE + + +  I + R + V    G+R       +G
Sbjct: 722 NPGRTNLIDAGGMKVLIDYGHNVPALEALSELVNRIPAQRRLCVASAPGNRRDEDLFSLG 781

Query: 404 KIALDLADIAIVTDDNPR----SEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLN 457
                + D+  + +  PR     E  + +R   +   G           +A   A++  +
Sbjct: 782 AQLASMHDVVFLCETAPRGRPEGETVDLLRQGAMSVSGTCRVETIMQESQAAAKALDEAH 841

Query: 458 KQ 459
           + 
Sbjct: 842 EG 843


>gi|167752297|ref|ZP_02424424.1| hypothetical protein ALIPUT_00541 [Alistipes putredinis DSM 17216]
 gi|167660538|gb|EDS04668.1| hypothetical protein ALIPUT_00541 [Alistipes putredinis DSM 17216]
          Length = 489

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 22/280 (7%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       T+   DH+D + T +A   A  +   ++    +  +    D      +K  +
Sbjct: 204 LWPDVAVVTSADADHLDIYGTHEALREAFSQFVGQIREGGALVVKRGVD------LKIGN 257

Query: 262 NAGCRVLSVGYQGKFIHLKKVCA--IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                      +    + + V      + +   ++  G        +PG   + NA+ A 
Sbjct: 258 PGIRVYRYSYDEPCDFYARNVTLLEGGHYRYDLVTPGGVVEGCTLGIPGWVNIENAVAAV 317

Query: 320 GLCIA------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
                        +D+  + E L     V  RFEF   N+       DYAH    L   +
Sbjct: 318 AALWCASERDGEPLDAERLREALASFEGVKRRFEFY-VNTPRQVYMDDYAHHPRELAAAI 376

Query: 374 KNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +++ +  GR +          R +       + AL  AD  ++    P  E+P      
Sbjct: 377 TSVKKMFPGRRLTALFQPHLYTRTRDFYREFAE-ALSHADRVVLLPIYPAREEPIPGVES 435

Query: 432 IIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            + G  +       +R E       M    DV+V  G G+
Sbjct: 436 EMIGRLLTVPWTICDRAELAEKVAAM--DTDVVVSFGAGN 473


>gi|226941971|ref|YP_002797045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Laribacter
           hongkongensis HLHK9]
 gi|226716898|gb|ACO76036.1| MurD [Laribacter hongkongensis HLHK9]
          Length = 456

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 141/436 (32%), Gaps = 51/436 (11%)

Query: 33  VSSDSRHIQAGW---IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN 89
           V +DSR +         VA  G +     F   A   G + +V+S    L   +    + 
Sbjct: 36  VVADSREVPPNAGQLAGVA-AGAELRAGAF-SAATFAGCDVLVLSPGVPLATPAVAAFAG 93

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
             I  V+   + ++  A          ++A+TG++GK++V S    +    G      G 
Sbjct: 94  EVIGDVEVFARAIAPLA--------IPVIAITGSNGKTTVTSLAGHLVAACGRRGVVAGN 145

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                  A  +   +                      +E SS  L+      +  IA + 
Sbjct: 146 IGLAVLDALADIEASGELPECF--------------VLELSSFQLET--TTSLNAIAATT 189

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N+  DH+D ++   AY ++K  +F           +   D      M R          
Sbjct: 190 LNISEDHLDRYRDLLAYADSKAAVFNGGG-----VQVLNRDDLFVRAMARPQRRHVWFSL 244

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                 +   ++             +          L G     NAL A  LC A G+  
Sbjct: 245 EDAGADYALAERDGRHWLCAGGEALLPF----DAMQLVGLHNAANALAALALCEAAGLPR 300

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A +L  L     +  R E V T+     I         + E  LK +      R +V+  
Sbjct: 301 AGLLAGLTTFKGLAHRVEHVLTHEGVDFIDDSKGTNVGATEAALKGMT-----RPVVLIA 355

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEA 448
            G  + Q   P+   +A     + ++  D P       +  + + G+    I+     EA
Sbjct: 356 GGDGKGQDFSPLAPALARIGRAVLLIGRDAP-------VVRQALAGLALPLIDCATLEEA 408

Query: 449 IRTAIEMLNKQDVLVV 464
            R   E+    DV+++
Sbjct: 409 TRRGFELAQPGDVVLL 424


>gi|312874647|ref|ZP_07734671.1| bifunctional protein FolC [Lactobacillus iners LEAF 2053A-b]
 gi|311089877|gb|EFQ48297.1| bifunctional protein FolC [Lactobacillus iners LEAF 2053A-b]
          Length = 421

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 110/402 (27%), Gaps = 36/402 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + P +   N   ++      L     +     +TGT+GK S A ++ ++ Q++G S   
Sbjct: 11  EHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRLLQKTGQSIGL 70

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205
                      +      P    L  +        + ++  +     L        +   
Sbjct: 71  FVSPYVEMFNERIQINGQPISDELLISAYRAVKNAIRNIQKKYPEFNLVTFEFETAMAFW 130

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  N     I+     +      +     ++                ++         
Sbjct: 131 IFAKQNCDYAVIEVGIGGEHDKTNVIVPQASIITTIGLDHEKIIGPTMFDIAHEKSGVIK 190

Query: 266 R-----------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +                 +     +   + L             +    K        P 
Sbjct: 191 KNRPVVLGNVPAKVLPLLMEKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFKLRPQ 250

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL            S   +E      ++P R++ V        I +D AH   +
Sbjct: 251 AEAYDIALALITFATLKFDISVSDIEDTINNTIIPARYQIVQKKPL---IMIDGAHNIQA 307

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDN-PRSED 424
           +  ++  +R I  GRI ++ G   D+D  K        + L D       T  + PR+  
Sbjct: 308 VHELISYVRKIAQGRIYILLGMMKDKDIAK-------VVKLFDPKEKITFTRISYPRAAT 360

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  ++   I       +   A       L K D+LVV G
Sbjct: 361 KSDIEEDLNCHIN---FIDDYRLAYDILKNKLTKDDILVVTG 399


>gi|283834853|ref|ZP_06354594.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Citrobacter youngae ATCC 29220]
 gi|291069104|gb|EFE07213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Citrobacter youngae ATCC 29220]
          Length = 458

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 98/359 (27%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 203 QFHHLVRIVPGQGRIIYPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVW 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGENVGVVKWGLVGEHNMHNGLMAIAAARHVGVVPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV 432


>gi|262201991|ref|YP_003273199.1| FolC bifunctional protein [Gordonia bronchialis DSM 43247]
 gi|262085338|gb|ACY21306.1| FolC bifunctional protein [Gordonia bronchialis DSM 43247]
          Length = 508

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 19/136 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + +      ++ D AH  +    + +  +      R++ V G  GD+D      
Sbjct: 363 PGRLERLRSAPT---VFADAAHNPHGATALAQALVEEFDFRRLVGVVGVLGDKDA---RG 416

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRA---EIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + +    + D+ ++T+  +PR+ D   +     EI  G    + K    +A+  AI +  
Sbjct: 417 LLEALEPVFDVVVLTNNGSPRALDTSTLADYATEIF-GEERVVVKPFLPDAVEAAIALAE 475

Query: 458 KQD-------VLVVAG 466
           + D        +V+ G
Sbjct: 476 EVDGEPVSGAGVVITG 491


>gi|227115174|ref|ZP_03828830.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 461

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 104/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSS--FQIGPTSTI--SSFAQDNRLTTPSPIY 169
              ++AV GT GK++ A  V  I +  G        G       S+   D+         
Sbjct: 102 DRWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              A     S+ V +                          NL  DH D     +A    
Sbjct: 162 YDCAFFDKRSKFVHY------------------CPRTLVLNNLEFDHADIFDDLKAIQ-- 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                   L +  P         +   +K+    GC         +     +  +I   Q
Sbjct: 202 ---KQFHHLVRLVPGSGKIILPANDLNLKQVMGMGCWSEQELVGEEGTWRAQKVSIDASQ 258

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                      +  + L GE  ++N L+A      +G+  A     L        R E  
Sbjct: 259 YQVYLNNELVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELR 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG--KIAL 407
           GT   G  +Y D+AH   ++   L  +R+   G    +      R    +  M   ++A 
Sbjct: 319 GTE-HGVTVYDDFAHHPTAILATLSALRSKVGGTAR-ILAVLEPRSNTMKLGMCKNELAP 376

Query: 408 DL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  AD   +      +  P ++       +       +    +   ++     D ++V
Sbjct: 377 SLGRADEVFLFQP---THIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHILV 432


>gi|284030820|ref|YP_003380751.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
 gi|283810113|gb|ADB31952.1| UDP-N-acetylmuramate/alanine ligase [Kribbella flavida DSM 17836]
          Length = 479

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 93/427 (21%), Positives = 146/427 (34%), Gaps = 52/427 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + +A  A+ +VVS+A    +    A   +  PIL     R      AS + G+ 
Sbjct: 66  GH--AAEHVAN-ADTVVVSTAIRETNPEVVAAQAAGIPIL----PRAA--ALASVMAGR- 115

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  S +    Q              ++    +    T     L  A
Sbjct: 116 --RTIAVAGTHGKTTTTSMLTVALQHCAAD-PSYAIGGNLNESGSNAHDGTGD---LFVA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S +       E S                   T++  DH+D +  + +Y  A    
Sbjct: 170 EADESDKSFLTYGPEVS-----------------IVTSVEPDHLDNYGDEASYTKAFEDF 212

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-HLKKVCAIHNKQQVT 292
            + +LP     I   DDA ++ +   A   G  V + G        + ++ A    Q   
Sbjct: 213 CDRVLPGGFLVI-CVDDAGARRLAGFARERGIDVRTYGESADADLRVTEITATGAVQSFV 271

Query: 293 ISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               G+          G+    NA  A  + + +G  +A + E L        RFEF G 
Sbjct: 272 PVWRGRKLPVVNLQQAGKHNALNASAALAVGLGLGFSAADLAEGLASFTGTGRRFEFKGQ 331

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMG---KIAL 407
              G R+Y  YAH    L + L   R +   GR+I  F         +  I       AL
Sbjct: 332 ED-GVRVYDSYAHHPTELAVDLTAARQVAGEGRVIACFQPHL---FSRTRIFATEFSAAL 387

Query: 408 DLADIAIVTDDNPRSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
            LAD  +V D     EDPE       I   +         + +     R   ++    D+
Sbjct: 388 ALADEVVVMDVFAAREDPEPGVTGALIANHVPLKPEQVRFEPSWSAVPRVVADLALPGDL 447

Query: 462 LVVAGKG 468
           +V  G G
Sbjct: 448 VVTLGAG 454


>gi|197334581|ref|YP_002156996.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
 gi|226706333|sp|B5FB34|MURC_VIBFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197316071|gb|ACH65518.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
          Length = 487

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 150/452 (33%), Gaps = 70/452 (15%)

Query: 38  RHIQAG-WIFVAIVGNKEDGHLFIPQA--IAQGAEAIVVSSAYSLQDFS--ATIRSNTPI 92
           R  Q G  IF         GH    QA  + + A  +VVS+A    +    A   +  P+
Sbjct: 62  RLAQKGAEIFF--------GH----QASNVEK-ASVVVVSTAIDPSNPEIVAAKENRIPV 108

Query: 93  LVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           +     R+   L+      +G      +AV GT GK++  +   QI   +GL    +   
Sbjct: 109 I-----RRAEMLAELMRYRHG------IAVAGTHGKTTTTALTTQIYSEAGLDPTFV-NG 156

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT 210
             + +   + RL          A +  S     H+    S                   T
Sbjct: 157 GLVKNAGTNARLG---SSRFLIAEADESDASFLHLQPMVS-----------------IVT 196

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+  DH+D +             F   LP    A++  DD   +E++ +           
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQVSRQVITYGFS 256

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                   L     +  +   T+  + + D D +  +PG+    NA  A  +     ++ 
Sbjct: 257 DDADV--RLINYRQVGQQSFFTVQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDVED 314

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +L  L        RF+ +G    G     +  DY H    +++ +K  R   + +  +
Sbjct: 315 EAILTALLNFEGAGRRFDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAARAGWAEKR-L 373

Query: 387 VFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP------EKIRAEII-HGIP 437
           V      R    R +    A   D  D+ I+ D     E P        +   I   G  
Sbjct: 374 VMIFQPHRYSRTRDLYDDFANVLDNVDVLIMLDVYSAGETPIAGADGRALCRTIRGRGKI 433

Query: 438 GFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             +     IEA+   +   + + D+++  G G
Sbjct: 434 DPVFVPT-IEALPPVLANIIQEGDLILTQGAG 464


>gi|114763027|ref|ZP_01442457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544351|gb|EAU47359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           HTCC2601]
          Length = 467

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 107/376 (28%), Gaps = 64/376 (17%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
            +      P  ++AVTG++GKS+ ++ +  I Q +G  S   G         +       
Sbjct: 111 GAWEMFDQPPKVVAVTGSNGKSTTSALIHHILQSAGRGSQLAGNIGRGVLDIEPPEEGGV 170

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             + L                   SS+  D  R   +      FTNL  DH+D H     
Sbjct: 171 VVLEL-------------------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGLGG 209

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS-------VGYQGKFIH 278
           YF AK RLF E  P          D      +      G                G    
Sbjct: 210 YFAAKRRLFAEGGPDRCVI---GVDEAEGRYLANQLAEGAVDDRLIRVSAARKLSGPGWD 266

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +        + +    V   D   +  LPG     NA  A     A+G+   ++      
Sbjct: 267 VFARKGFLTEWRKGRQVASIDLRQVRGLPGAHNHQNACAAYAAARALGVAPRVIEAAFHS 326

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC-------- 390
              +P R + V        +    A   +     LK ++     R I             
Sbjct: 327 FEGLPHRSQIVADAGGVVYVNDSKATNVD---AALKALQAFPRIRWICGGLMKEGGLEAL 383

Query: 391 -GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
             G     K  ++G+ A   A                      + G+       +   A+
Sbjct: 384 APGFDHVAKAYVIGREAAGFA--------------------LGLAGVE-AEVCTDMDTAV 422

Query: 450 RTAIEMLNKQDVLVVA 465
             A+      + +++A
Sbjct: 423 ARAMADAEPGETVLLA 438


>gi|323497896|ref|ZP_08102905.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
 gi|323316941|gb|EGA69943.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
          Length = 486

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 125/406 (30%), Gaps = 50/406 (12%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +AV GT GK++  + V Q
Sbjct: 94  ENPEIVAARAARIPVV-----RRAEMLAELMRFRHG------IAVAGTHGKTTTTALVTQ 142

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   +GL    +     + S   + RL +   +      S  S                 
Sbjct: 143 IYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH-------------- 187

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++ +    TN+  DH+D +             F   LP    AI+  DD   +E
Sbjct: 188 ------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRE 241

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++ +                 I   +      K    I     D D    +PG     NA
Sbjct: 242 LVPKISRQVITYGFAEDADVRIDNYRQEGQQGKFT-VIRQGKADLDITLNIPGRHNALNA 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMI 372
             A  +     I    +L  +        RF+ +G    G     +  DY H    +++ 
Sbjct: 301 SAAIAVATEDDIADEAILNAMAGTQGTGRRFDHLGEFDTGNGAVMLVDDYGHHPTEVDVT 360

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP----- 425
           ++  R     + +V+        + +        +     D+ I+ D     E P     
Sbjct: 361 IQAARNGWEDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLILLDVYSAGEKPIPGAD 419

Query: 426 -EKIRAEII-HGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              +   I   G    I   +  +A+   +   L   D+++  G G
Sbjct: 420 GRALCRTIRGRGKLDPIFVPD-SQALPAVLANVLQDGDLVLTQGAG 464


>gi|295099659|emb|CBK88748.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium cylindroides
           T2-87]
          Length = 435

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 133/397 (33%), Gaps = 53/397 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +++  ++   +       + P +      ++L +   R       N + V GT GKS+ 
Sbjct: 62  IVIIGLSFDRSNPEVAAAMDNPTVKTYYYNEYLGILLKRY------NSICVAGTHGKSTT 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              + Q+    G + F IG         ++            +                 
Sbjct: 116 TGILGQVLSHFGKTGFLIG--DGHGYMPKNADNFVLESCEFQRHF--------------- 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  DH+DY++    Y +A       +   +  A+I+ D
Sbjct: 159 ----------LAYSPDYAIITNIELDHVDYYKDMDDYLDAFQ---SFIHQIKKKAVIFGD 205

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D Y   +    +   C    +     +  +      +      +    K+     P  G 
Sbjct: 206 DPY---LKDLDYKVPCVTYGLNEGNDYRAINVEMGSYGMHFDCVYDNDKNIHVELPEVGI 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + +AL    LC  +G++++ ++E L++   +  RF  V    +      DYAH   ++
Sbjct: 263 PFLQDALGCFALCHEMGMEASDIVEGLKEYQGIARRF--VVEEVKDSVCIDDYAHHPTAI 320

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD--DNPRSEDP 425
             ++   R    G+ +V      DR    +  + + A  L  AD   + D   N + ED 
Sbjct: 321 RYMIDAARKKYPGKKVVAL-YKPDRYSRLQYFLDEFAESLNTADQVCLCDFPKNAKRED- 378

Query: 426 EKI---RAEIIHGIPGFIEKG-NRIEAIRTAIEMLNK 458
           + I     +++   P  I    ++  A   A++ +  
Sbjct: 379 DTITVTIQDLLDRCPNSILLDIDQKSA--EALKEMAP 413


>gi|283456395|ref|YP_003360959.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium dentium Bd1]
 gi|283103029|gb|ADB10135.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium dentium Bd1]
          Length = 521

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 118/429 (27%), Gaps = 44/429 (10%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V SSA    +    A   +   I+   +    L            +  + V G  
Sbjct: 88  GARTVVFSSAIKPDNPEIVAAYEAGERIVHRSDILALL---------MQSKRAVTVAGAH 138

Query: 125 GKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GK++ +S +  I   +G       S    G          D        + +A+A     
Sbjct: 139 GKTTTSSMLAHILVNAGEGELADPSYAIGGSIQGKDGATLDGGHAGKGSVLVAEADESDG 198

Query: 179 SQGVTHVSVE----ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S    H  +     A +  LD +  +     A                      A +R  
Sbjct: 199 SFAKYHPEIAIITNAEADHLDHYGTEAKYRAAFVEHAGCAGKAVIMCGDDDGALAVLRAL 258

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  + +              ++       G   + +  + +         I +     + 
Sbjct: 259 KTEVARHVVVYSTQPSEDLGDL------NGAAHVRIESESESTQSGAEHFILHLPAGLVD 312

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           VE +       +PG     NA  A    + +G+D                RF+  G+ ++
Sbjct: 313 VEERRVPVTLTVPGIHNARNATAALLAAVMLGVDVERAAAAATSFLGAARRFQIRGSVNQ 372

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DYAH    +  +L   R       I V        R         +     AD 
Sbjct: 373 -VTVIDDYAHHPTEIAALLDAARRRYPEAGIHVIFQPHLFSRTMFFAREFAEALAK-ADD 430

Query: 413 AIVTDDNPRSE--------DPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQ 459
            IVT   P  E         P+ I  E +               +   A +  +   +  
Sbjct: 431 VIVTGIFPAREKQEDFPTVSPDTIVNEAVKLEHEPADDWIRGVDDMRTAAQMMVMRAHHG 490

Query: 460 DVLVVAGKG 468
           DV+   G G
Sbjct: 491 DVIFTVGAG 499


>gi|255994059|ref|ZP_05427194.1| tetrahydrofolate synthase [Eubacterium saphenum ATCC 49989]
 gi|255993727|gb|EEU03816.1| tetrahydrofolate synthase [Eubacterium saphenum ATCC 49989]
          Length = 441

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 10/132 (7%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKR 399
              GRFE    ++    I +D AH    +E + +N++      +I+ V    GD+     
Sbjct: 294 HFSGRFEVFEGDAGCADIVLDGAHNVAGIEALEQNVKLYYPNAKILAVTSMLGDKQVD-- 351

Query: 400 PIMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             +       ++  I T+ N        E  E I  +       + E  +  +A   A +
Sbjct: 352 -EILHRLCKFSNDVIFTEINNERRISAHEMLE-IAKQSEGNTGNYQEIPDTGKAFTQAYD 409

Query: 455 MLNKQDVLVVAG 466
                D+++  G
Sbjct: 410 SRRNYDLILFTG 421


>gi|212638300|ref|YP_002314820.1| UDP-N-acetylmuramate--L-alanine ligase [Anoxybacillus flavithermus
           WK1]
 gi|226711857|sp|B7GK78|MURC_ANOFW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212559780|gb|ACJ32835.1| UDP-N-acetyl muramate-alanine ligase [Anoxybacillus flavithermus
           WK1]
          Length = 433

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 101/352 (28%), Gaps = 49/352 (13%)

Query: 70  AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            ++  +A+    ++  A      P++      +FL  F  +         +AVTG  GK+
Sbjct: 63  VVIAGNAFPDTHEEIVAARELGVPVIR---YHQFLGDFLQKFTS------IAVTGAHGKT 113

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           S    +  + Q +  +S+ IG  S       +            +   +  +    +  +
Sbjct: 114 STTGLLAHVMQGAKPTSYLIGDGSGKGREGSEY-----FVFEACEYRRHFLAYSPDYAIM 168

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  DH DY    +  F+A                  
Sbjct: 169 ----------------------TNIDFDHPDYFANIEDVFSAFQ------QMAWQVKKGI 200

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                 + + K            G    F     V                   F  P  
Sbjct: 201 IACGDDEYLQKIQAKVPVVFYGFGEDNDFQARNIVKTPEGTSFDVFVRHTFFASFHIPRY 260

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V NAL    LC   GID  ++ E L+    V  RF      S+   +  DYAH   
Sbjct: 261 GDHNVLNALAVIALCHYEGIDVNIIQERLKTFPGVKRRFHEKMLGSQ--VLIDDYAHHPT 318

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD 417
            +   ++  R     R IV         R Q       +    LAD   + D
Sbjct: 319 EIRATIEAARQKYPERQIVAIFQPHTYTRTQTFLDEFAESLS-LADAVYLCD 369


>gi|167756854|ref|ZP_02428981.1| hypothetical protein CLORAM_02403 [Clostridium ramosum DSM 1402]
 gi|237734564|ref|ZP_04565045.1| UDP-N-acetylmuramate-L-alanine ligase [Mollicutes bacterium D7]
 gi|167703029|gb|EDS17608.1| hypothetical protein CLORAM_02403 [Clostridium ramosum DSM 1402]
 gi|229382384|gb|EEO32475.1| UDP-N-acetylmuramate-L-alanine ligase [Coprobacillus sp. D7]
          Length = 436

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 82/273 (30%), Gaps = 15/273 (5%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q              N+  DH+DY    + Y  +  +   +    +   I++ DD     
Sbjct: 154 QDHFLHYYPKYAIINNIELDHVDYFGNLERYIESFEKFANQ---VKDTVIVWGDDPN--- 207

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K           +        +  +   +               F  P  G   +YN+
Sbjct: 208 IKKINFKKRVMRFGLNDYNDVRAVNVLENSNGLSFDVYIHNELFGHFNLPYFGMHMLYNS 267

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    L     + +  +   +        R+              DYAH   +++ +++ 
Sbjct: 268 LAIITLGYLENMTNDYIQNRMATFEGTKRRYSVT--EVGNNVYVDDYAHHPTAIKYVIEA 325

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVT--DDNPRSEDPEKI-RAE 431
            R     + IV         +G R  +      DLAD        +N   E+   I   +
Sbjct: 326 TRVRYPSKKIVAIFKPDRFSRGARFAVDFAKSMDLADYPYFCPFPENAVKEEGIDIDIYD 385

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I + +P     G   EA   A E+    +V+ +
Sbjct: 386 IANNLPRAKVIGEDEEA---AKELAKFDNVVFL 415


>gi|319425223|gb|ADV53297.1| UDP-N-acetylmuramate [Shewanella putrefaciens 200]
          Length = 464

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 105/355 (29%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSACLGESAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A      
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQKQFN 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +  +          A  + +         +      +       K  +       
Sbjct: 209 HLIRTVPGEGKIIWPVDVQAVKQTI--DMGCWSEQEHYHTAESITGWYGKALSDDCHCFE 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  + NA++A      +G+  +  +E L +      R E +G 
Sbjct: 267 VFFDGESQGVLEWDLIGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   LK +R  +   +IIVV     +  + G        ++  
Sbjct: 326 TVNGISVYDDFAHHPTAIATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + +     +   +   +      E +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMK---EAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVV 437


>gi|119505603|ref|ZP_01627674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
 gi|119458546|gb|EAW39650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
          Length = 1110

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 115/358 (32%), Gaps = 37/358 (10%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           + Q   +G   ++ S   S+ +           L V NT   L   A          ++ 
Sbjct: 371 VAQVFKKGVALVISSEQNSVPEGQ--------YLEVRNTFTALIKLALARRAAFRGRVIG 422

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           VTG+ GK++V S          + +  +G    +     +       P  +A        
Sbjct: 423 VTGSVGKTTVCS----------MVTSLLGVHGEVYKNIANFNHQPGVPKSIANIPRTAR- 471

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA-KMRLFEELL 238
                + +   +      +   ++      T++  DH+++H++  +        ++    
Sbjct: 472 --YAVIEMGMGAKRTILPKAVLVRPHTAVVTDIQADHMEFHESVASVITTKMEIIWGVES 529

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                    +    +   +    +    +    +    I  +++     +  + + V  +
Sbjct: 530 GGTVVLNRDSAYFATLHGLALQRSDINILTFGQHPQADICAEEIVLEPVQSVIQVRVFQQ 589

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----R 354
            F +   LPG     N+L+A  + ++ G+D A  L   E +     R + +   S    R
Sbjct: 590 TFKYTLSLPGMHMALNSLIAIAVIVSEGVDLATSLPVFENIGAETRRNQKIRVTSASGAR 649

Query: 355 GGRIYVDYAHTSNSLEMILK---NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              +   +     S+   L     +R  + GR I+V    G         MG  AL  
Sbjct: 650 IQILDDSFNANPASIRSNLHLLELMRPESEGRRILVLSDMG--------EMGSEALHY 699


>gi|46199942|ref|YP_005609.1| folylpolyglutamate synthase [Thermus thermophilus HB27]
 gi|46197569|gb|AAS81982.1| folylpolyglutamate synthase [Thermus thermophilus HB27]
          Length = 414

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 12/125 (9%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR + +    RG  + +D AH       + + +R         V G   D+D      
Sbjct: 280 NPGRLQRL--LWRGRELLLDGAHNPEGALALREALRFHGLLPAAFVLGFSRDKD---HAA 334

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M +    L  + +    + RSEDP      ++   PG     + +EA+  A     +   
Sbjct: 335 MAEALRGLGPVVLTRYASLRSEDP----RALLPLFPGAKVVEDPLEALEEAFS--REG-R 387

Query: 462 LVVAG 466
           +VVAG
Sbjct: 388 VVVAG 392


>gi|301155957|emb|CBW15427.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 451

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 68/211 (32%), Gaps = 7/211 (3%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K   N GC               +       +        K  +  + + G+  ++NAL
Sbjct: 227 VKETLNMGCWSEQQFIGKDKEWFAERITNDCSEFAVFHHGKKVAEVKWNIVGQHNMHNAL 286

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A       GI      + L        R E  G    G  +Y D+AH   ++   L  +
Sbjct: 287 MAIVAAYHAGIKIEDACQALGSFINAKRRLEVKG-EVNGITVYDDFAHHPEAILATLTAL 345

Query: 377 RTITSG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R    G  RI+ V     +  + G        AL  AD   +   +    D  +I  +  
Sbjct: 346 RDKVGGGVRILAVLEPRSNTMKMGVHKDEIAPALGRADAVFMLQPDNIPWDVAEIAGQ-- 403

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +      G+  + +   +     +D ++V
Sbjct: 404 -CVQPAHYTGSVDKLVDMIVAEAKPRDQILV 433


>gi|312109889|ref|YP_003988205.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y4.1MC1]
 gi|311214990|gb|ADP73594.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y4.1MC1]
          Length = 434

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 119/402 (29%), Gaps = 56/402 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++  A      P++      +FL  F  +         +AV G+ GK+S
Sbjct: 64  VIAGNAFPDTHEEIQAAYELGVPVIR---YHRFLGEFLQKFTS------IAVAGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG               T   I  +K   + + +   H    
Sbjct: 115 TTGLLAHVMQGAHSTSYLIG-------------DGTGKGIEGSKYFVFEACEYRRHFLSY 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
              + +               TN+  DH DY       F+A     E  L  +   I   
Sbjct: 162 FPDYAI--------------MTNIDFDHPDYFANIDDVFSAFQ---EMALQVKKGIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y +++  +           G    F     V                   F  P  G
Sbjct: 205 DDEYLQKIKAKV---PVLFYGFGDDNDFQARNVVKTTEGTSFDVFVRNTFFASFEIPRFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC    ID  ++ E L+    V  RF           +  DYAH    
Sbjct: 262 DHNVLNALAVIALCHYEEIDVHIIQERLKTFQGVKRRF--SEKVLGNQILIDDYAHHPRE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD--DNPRSED 424
           +   +   R    GR IV         R Q       +     AD   + D   + R   
Sbjct: 320 IIATIDAARQKYPGREIVAIFQPHTYTRTQAFLREFAESLQQ-ADQVYLCDIFGSAREHH 378

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-----NKQDV 461
            +    ++   IP          ++    E          D+
Sbjct: 379 GKLSIQDLQAQIPNSRLIQENDTSVLKQHENAVLIFMGAGDI 420


>gi|251788251|ref|YP_003002972.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya zeae Ech1591]
 gi|247536872|gb|ACT05493.1| UDP-N-acetylmuramate/alanine ligase [Dickeya zeae Ech1591]
          Length = 486

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 138/424 (32%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA +  +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVTSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGH 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           A++  DDA  +E++ +                   +     +  +   T++ +GK   + 
Sbjct: 227 AVMCLDDAVIRELLPKVGRHITTYGFSDDADV--RVADYRQVGAQGLFTLARQGKPLLNV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------ 356
               PG     NA  A  +    GID   +L  L +      RF+F+G            
Sbjct: 285 TLNAPGRHNALNAAAAVAVATEQGIDDEAILRALARFQGTGRRFDFLGEFPLQPVNGKSG 344

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DY H    ++  +K  R     + +V+        R +        +     D+
Sbjct: 345 SAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQ-VDV 403

Query: 413 AIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++ D  P  E P        +   I   G    I   +         + L   D+++V 
Sbjct: 404 LLMLDVYPAGEAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|329921051|ref|ZP_08277574.1| bifunctional protein FolC [Lactobacillus iners SPIN 1401G]
 gi|328934958|gb|EGG31447.1| bifunctional protein FolC [Lactobacillus iners SPIN 1401G]
          Length = 421

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 110/402 (27%), Gaps = 36/402 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + P +   N   ++      L     +     +TGT+GK S A ++ ++ Q++G S   
Sbjct: 11  EHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRLLQKTGQSIGL 70

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205
                      +      P    L  +        + ++  +     L        +   
Sbjct: 71  FVSPYVEMFNERIQINGQPISDELLISAYRAVKNAIRNIQKKYPEFNLVTFEFETAMAFW 130

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  N     I+     +      +     ++                ++         
Sbjct: 131 IFAKQNCDYAVIEVGIGGEHDKTNVIVPQASIITTIGLDHEKIIGPTMFDIAHEKSGVIK 190

Query: 266 R-----------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +                 +     +   + L             +    K        P 
Sbjct: 191 KNRPVVLGNVPAKVLPLLMEKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFKLRPQ 250

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL            S   +E      ++P R++ V        I +D AH   +
Sbjct: 251 AEAYDIALALITFATLKFDISVRDIEETINNTIIPARYQIVQKKPL---IMIDGAHNIQA 307

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDN-PRSED 424
           +  ++  +R I  GRI ++ G   D+D  K        + L D       T  + PR+  
Sbjct: 308 VHELISYVRKIAQGRIYILLGMMKDKDIAK-------VVKLFDPKEKITFTRISYPRAAT 360

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  ++   I       +   A       L K D+LVV G
Sbjct: 361 KSDIEDDLNCHIN---FIADYRLAYDILKNKLTKDDILVVTG 399


>gi|310657933|ref|YP_003935654.1| folylpolyglutamate synthase [Clostridium sticklandii DSM 519]
 gi|308824711|emb|CBH20749.1| folylpolyglutamate synthase [Clostridium sticklandii]
          Length = 435

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKRP 400
             GR E +    +     +D AH  +  E++ + IR   +  ++ +VFG   D+D  K  
Sbjct: 296 WAGRLELL---VKEPITIIDGAHNEDGAEVLAQAIRKYLSDYKVTLVFGMLRDKDINK-- 350

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           ++G I L + D  I    N  R+   E +  ++           N  +A+  A  +  ++
Sbjct: 351 VLG-ILLPVVDKVITARPNSDRAMTAEDLAQKVKAFEKQVEVSKNIKDAVEKASMINGEK 409

Query: 460 DVLVVAG 466
           + +V AG
Sbjct: 410 EAVVYAG 416


>gi|86140625|ref|ZP_01059184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832567|gb|EAQ51016.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
          Length = 444

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 118/361 (32%), Gaps = 37/361 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA+R        ++ +TG++GK++    +  + +++GL S   G               
Sbjct: 94  EFAARYTK---ATLVGITGSNGKTTTTMLMAHLLKQAGLKSVAAGNIGDS---------- 140

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                       +++       ++E SS  LD   +          TN+  DH+D ++ +
Sbjct: 141 ---------FAKWVALDDQDFYALEISSFQLD--GIVDFAPHIAILTNITPDHLDRYEYK 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        E   ++   I  ADD    + + +       +     +          
Sbjct: 190 FENYIKSKFRIAENQTEKDYLIYDADDPVITDWLAKHPVRSQCIPFSISKQLEKGAYYAQ 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
              N      ++     +         +   A   A   ++I    A + E LE    V 
Sbjct: 250 EEINILIDDTTMTMSTKNLTIKGAHNTKNAMAAATAARLLSIRK--ATIRESLEGFQGVE 307

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V   +    I    A     +      + ++++  + +V G   D+      +  
Sbjct: 308 HRLEQVLKINHVSYINDSKATN---VNATFYALDSMSAPTVWIVGGV--DKGNDYTDLFP 362

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +   +  I  +  DN       K+       +   IE  +  EA++ A ++ +K D ++
Sbjct: 363 LVNEKVKGIICLGVDN------AKLLNTFSGMVETIIETQSITEAVKIAYKLSDKGDNVL 416

Query: 464 V 464
           +
Sbjct: 417 L 417


>gi|323464730|gb|ADX76883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 449

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 139/429 (32%), Gaps = 66/429 (15%)

Query: 54  EDGHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSATIRSN------TPILV--VDNTRK 100
            DG+     A A+     G   +  +   +L D +  I  N       PI+        K
Sbjct: 38  NDGNDLSNDAHAKDLEDLGISVVSGAHPLALLDEAPIIFKNPGIPYTVPIIQEAQKQGLK 97

Query: 101 FLSL--FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            L+    +  +       I+ +TGT+GK++V S +  +  +S  +    G    ++S   
Sbjct: 98  ILTEVELSYLISEAP---IIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVASKVA 154

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               T                    ++  E SS  L    ++  +      TNL   H+D
Sbjct: 155 QEVKT------------------DEYLVTELSSFQLL--GIEHYRPHIAIITNLYSAHLD 194

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH+  + Y NAK R+FE     +        +   + ++  +      +           
Sbjct: 195 YHENLENYQNAKKRIFENQTESDYLIF----NDKQRHLIDTSKIRAKILYFSTQHRVDGI 250

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +   I       I ++         L       N L A    I  G+  + +++ L  
Sbjct: 251 YVEKEYIVYNGVRLIHLDDIVLPGEHNL------ENILAAVMAAILAGVSISAIVQSLST 304

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +  R +++G N          A  + + +  L + +       ++    G DR  G 
Sbjct: 305 FSGIAHRLQYIGNNKTNKYYNDSKATNTLATQFALSSFKQ-----PVIWLCGGLDRGNGF 359

Query: 399 R---PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               P M  +        +VT      E  +K            I   +  +A+    ++
Sbjct: 360 DELIPYMNNV------RVMVT----FGETQDKFVKLGESQGKYVIRAKDVTDAVAKVQDV 409

Query: 456 LNKQDVLVV 464
           +   DV+++
Sbjct: 410 IEPNDVVLL 418


>gi|238787571|ref|ZP_04631369.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238724358|gb|EEQ16000.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 461

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 100/355 (28%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAVAGTHGKTTTAGMVAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  +        
Sbjct: 202 KQFHHLVRIVPGQGKIIVPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L +      R E  G  
Sbjct: 262 LLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRVLGEFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P ++       I       +    +   ++     D ++V
Sbjct: 381 ADEVFLFQPQH---IPWQVVEVAEACIQPAHWSADIDTLVEMIVKTAQPGDHILV 432


>gi|253991523|ref|YP_003042879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638401|emb|CAR67023.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelat
           ligase (ec 6.3.2.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782973|emb|CAQ86138.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 463

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 109/377 (28%), Gaps = 51/377 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ A  +  I +  G    F IG        +     +    I   
Sbjct: 108 PERWVLAVAGTHGKTTTAGMLAWILEACGYKPGFLIGGVPGNFETSAQIGESPFFVIEAD 167

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D          A +
Sbjct: 168 EYDSAFFDKRSKFV---------------HYSPRTLIMNNLEFDHGDIFGDL-----AAI 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     L +  P         +   +K+  + GC               K  +  +    
Sbjct: 208 QRQFHHLVRIVPGSGKIFAPDNDINLKQVLSMGCWSELEQVGETGSWQAKKISTDSSDYR 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    +  + L GE  + N L+A      +G+        L        R E  G 
Sbjct: 268 VFYCGEVVGEVNWSLVGEHNMRNGLIAIAAAHHVGVQPTDACRALSDFINARRRLELRGQ 327

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG----KI 405
              G  +Y D+AH   ++   L+ +R+   G  RII V        +     MG    +I
Sbjct: 328 E-NGVTVYDDFAHHPTAILATLEALRSKVGGTARIITVLEP-----RSNTMKMGISKNEI 381

Query: 406 ALDL--ADIAIVTDDNPRSEDPEKI---RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQ 459
           A  L  AD   +         P  I    +EI            +    +   ++   + 
Sbjct: 382 APALGRADEVFLFQ-------PANIKWHVSEIADHCVQPAYWSADIDSLVNMIVDKAQQG 434

Query: 460 DVLVVAGKG-----HET 471
           D ++V   G     HE 
Sbjct: 435 DHILVMSNGGFGDIHEK 451


>gi|108763559|ref|YP_633745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
 gi|118595667|sp|Q1D0S8|MURD_MYXXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|108467439|gb|ABF92624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
          Length = 455

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 54/423 (12%)

Query: 61  PQAIAQGAEA----IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
             A+  GA A     + ++  S       + S   ++V       L    +         
Sbjct: 41  EDAL--GAVAHEVKALGATRVSGPTPPGLLASQDLVVVSPGVPLALPEIQAARAAGVAVW 98

Query: 117 I--------------LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                            +TGT+GKS+  +    +       +F  G      S       
Sbjct: 99  GEVELAGRMLSGVPLFGITGTNGKSTTTALTGTLFASGDKRTFVGGNLGRPFSE------ 152

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                       + +S      + VE SS+ L+  R   ++    +  NL  DHID + +
Sbjct: 153 ------------AAMSPGDWDALVVELSSYQLEGIRT--LRPRGAAILNLTPDHIDRYPS 198

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             AY  AK R+F+     +   +  ADDA    + + A          G           
Sbjct: 199 HAAYGEAKARIFQNQQAGDFVVV-NADDADVLGLARAAKAPVYGFSLTGKPVADAPALAG 257

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPG-EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
            A+       ++  G+ +              NA+ AA L    G+ S  V   L+    
Sbjct: 258 LAVVEPGGFRLAFLGEHYTLTNRALRGAHNAQNAMAAALLARLGGVASGAVQAGLDGYPG 317

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           +P R E V        +    A   +S+   L  +R  + G    V+   G + +G    
Sbjct: 318 LPHRLESVRVLDGVEWVNDSKATNVDSV---LVALRAFSQG----VWLIAGGKGKGAPYA 370

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
               A       ++T  +    D + +      G       G    A+  A E+  + D 
Sbjct: 371 PMVEAGQGKVKGVLTIGD----DADTLARA-YAGAAQVHACGTLAHAVARARELAERGDT 425

Query: 462 LVV 464
           +++
Sbjct: 426 VLL 428


>gi|320175807|gb|EFW50891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 457

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTSQPGDHILV 432


>gi|253731802|ref|ZP_04865967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724452|gb|EES93181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 449

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR      ++  +    A +  
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVRAMVVF 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   K            IE  N  +A+    +++   DV+++
Sbjct: 376 -------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|227326193|ref|ZP_03830217.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 461

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 104/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSS--FQIGPTSTI--SSFAQDNRLTTPSPIY 169
              ++AV GT GK++ A  V  I +  G        G       S+   D+         
Sbjct: 102 DRWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              A     S+ V +                          NL  DH D     +A    
Sbjct: 162 YDCAFFDKRSKFVHY------------------CPRTLVLNNLEFDHADIFDDLKAIQ-- 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                   L +  P         +   +K+    GC         +     +  +    Q
Sbjct: 202 ---KQFHHLVRLVPGSGKIILPTNDLNLKQVMGMGCWSEQELVGEEGTWRAQKVSTDASQ 258

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                 +    +  + L GE  ++N L+A      +G+  A     L        R E  
Sbjct: 259 YQVYLNKELVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELR 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG--KIAL 407
           GT   G  +Y D+AH   ++   L  +R+   G    +      R    +  M   ++A 
Sbjct: 319 GTE-HGVTVYDDFAHHPTAILATLSALRSKVGGTAR-ILAVLEPRSNTMKLGMCKNELAP 376

Query: 408 DL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  AD   +    P    P ++       +       +    +   ++     D ++V
Sbjct: 377 SLGRADEVFL--FQPAHI-PWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHILV 432


>gi|188026236|ref|ZP_02961393.2| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
 gi|188022175|gb|EDU60215.1| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
          Length = 472

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 73/421 (17%), Positives = 131/421 (31%), Gaps = 51/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A S  +          I V    R+   L+      +G      +AV GT G
Sbjct: 64  ASVVVVSTAISADNPEIQAAHELRIPV---IRRAEMLAELMRYRHG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL    +     + S     RL +   +      S  S       
Sbjct: 115 KTTTTAMISGIYAQAGLDPTFV-NGGLVKSAGTHARLGSSRYLIAEADESDASFLH---- 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +Q            F   LP    A+
Sbjct: 170 ----------------LQPLVAVVTNIEADHMDTYQGNFETLKDTFINFLHNLPFYGRAV 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   + ++ R                 I   +         +       +   +  
Sbjct: 214 MCIDDPVIRSLLPRVSRYVTTYGFSEDADVRIVKYEQKGNQGFFTIA-RENMPELTVVLN 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------R 357
            PG     NA  A  +    GID   +L  L +      RF+F+G  S            
Sbjct: 273 APGRHNALNATAAVAVATEEGIDDQHILSALVEFQGTGRRFDFLGNYSLRHVNGKEGEVM 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIV 415
           +  DY H    ++  +K  R     + IV+        + +        +     D+ ++
Sbjct: 333 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYSRTRDLYDDFAHVLSQ-VDVLLM 391

Query: 416 TDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +  P  E P        +   I   G    I      +  +   + L   D+++V G G
Sbjct: 392 LEVYPAGEKPVPGADSRSLCRTIRGRGQLDPIYVAEPEQVAQILAQALEDNDLILVQGAG 451

Query: 469 H 469
           +
Sbjct: 452 N 452


>gi|49486023|ref|YP_043244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208175|ref|ZP_06924605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|60390422|sp|Q6GA29|MURD_STAAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49244466|emb|CAG42894.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296886914|gb|EFH25817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|329728830|gb|EGG65251.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 449

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR      ++  +    A +  
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVRAMVVF 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   K            IE  N  +A+    +++   DV+++
Sbjct: 376 -------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|21282795|ref|NP_645883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300912253|ref|ZP_07129696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|30316062|sp|Q8NX35|MURD_STAAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21204233|dbj|BAB94931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|300886499|gb|EFK81701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 449

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIIYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR      ++  +    A +  
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVRAMVVF 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   K            IE  N  +A+    +++   DV+++
Sbjct: 376 -------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|238783538|ref|ZP_04627560.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia bercovieri ATCC 43970]
 gi|238715593|gb|EEQ07583.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia bercovieri ATCC 43970]
          Length = 461

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 98/355 (27%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAIAGTHGKTTTAGMVTWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLVMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  +        
Sbjct: 202 KQFHHLVRLVPGKGKIIVPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 FLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 AHGVMVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P ++       I       +    +   ++     D ++V
Sbjct: 381 ADEVFLFQPQH---IPWQVVEVAEACIQPAHWSADIDTLVDMIVKTAQPGDHILV 432


>gi|126741293|ref|ZP_01756971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
 gi|126717611|gb|EBA14335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
          Length = 465

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/409 (11%), Positives = 110/409 (26%), Gaps = 51/409 (12%)

Query: 69  EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG--KHPENILAVTG 122
            A+V S      Y   +          + V ++   F + FA + +     P  ++A+TG
Sbjct: 68  AALVTSPGIPHLYPQPNPVIRSALEAGVPVDNDIGLFFASFAHQGWDMMDQPPKVVAITG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+  + +  I +  G  S   G                   + L+   + L+    
Sbjct: 128 SNGKSTTVALLHHILESVGRDSQMAGNIGRGVLDIDPPADGGVVVLELSSYQTELARALT 187

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V++  +       R  G+                                +E L    
Sbjct: 188 PDVAILTNLSEDHLERHAGLGGYFA-------AKRRLFAEGGPDRAIIGIDEDEGLFLAG 240

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                A D     +  +    G        +G     +K   + +     ++    + + 
Sbjct: 241 QLSQAAVDDRVIRISAKKKLTGPGWQIFARKGFLSEYRKGRQVASIDLRQMTGLPGEHNH 300

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                         +A            ++ + L+    +P R + +   +    +    
Sbjct: 301 QNACAAYAAARVLGLA----------PRVIEQALDSYPGLPHRSQTIAEAAGVRYVNDSK 350

Query: 363 AHTSNSLEMILKNIRTITS-----GRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVT 416
           A   +S    L     I        +   +    G  ++  K  ++G+ A   A    V 
Sbjct: 351 ATNLDSAIKALSAFPKIRWICGGLEKEGGLSALQGQTKNVQKAYVIGREAAGFAMQLDV- 409

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                                         +A+  A+E     + +++A
Sbjct: 410 ---------------------EAEVCTTMEQAVARAMEDAQSGETVLLA 437


>gi|116512012|ref|YP_809228.1| folylpolyglutamate synthase [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107666|gb|ABJ72806.1| Folylpolyglutamate synthase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 427

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 80/217 (36%), Gaps = 13/217 (5%)

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +            +     ++ +  +     ++     + +    D    L G  QV NA
Sbjct: 202 LKALRVIWEVARKNTARIYQYPYDYRTELKEHEHFDFFASQEAILDLEKSLIGLHQVENA 261

Query: 316 LVAAGLCIAIGID-----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +A  L +          +  ++    +    P R E +G       I +D AH  +++ 
Sbjct: 262 GMAIELALVYANKVGINLNEEIIRAGIREAFWPARMEKLGE---NPLILLDGAHNVHAMN 318

Query: 371 MILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +L+N+ +     +I ++F     +D  +   M +     + + + T D P++ D +  R
Sbjct: 319 RLLENLGKEFPDKKITIIFSAITTKDIRQMIKMLQTV-KNSRLILTTFDYPKALDLKDFR 377

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                G        +   AI  A + LN+ ++L++ G
Sbjct: 378 YLEDEG---VELAPSWELAIVRAQKALNEDELLLITG 411


>gi|261820768|ref|YP_003258874.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Pectobacterium wasabiae WPP163]
 gi|261604781|gb|ACX87267.1| FolC bifunctional protein [Pectobacterium wasabiae WPP163]
          Length = 422

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 104/388 (26%), Gaps = 34/388 (8%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V    + L L       +    +  V GT+GK +    ++ I   +GL          +
Sbjct: 34  RVKQVAEHLQLL------QPAATVFTVAGTNGKGTTCCTLESILLAAGLRVGVYSSPHLV 87

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +           +++A    +   +       S    +   L  ++L   +  ++ 
Sbjct: 88  RYTERVRIQGN----EVSEAQHTQAFADIEAGRGSVSLTYFEFGTLSALQLFKQANLDVV 143

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +       A       +               +D  S    K       R   VG  
Sbjct: 144 ILEVGLGGRLDATNIVDADVSVVTSIAIDHTDWLGNDRESIGREKAGIFRQDRPAVVGEP 203

Query: 274 GKFIHLKKVCA-----------IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                +  V A                    +   +D            V     A  L 
Sbjct: 204 DMPGTIADVAAEKGAHLRRRGRDWEFSVQRETWSWQDKQRELSRLPLPNVPLPNAATALA 263

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
                   +  E + +               +   + +D AH  ++   +   + T+   
Sbjct: 264 ALHYSSLNVSEEAIRQGLQRAALPGRFQVVQQSPLLILDVAHNPHAAAYLANRLATLPKT 323

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPG 438
           G+I  V G   D+D       G +A    L D       + PR         +I   +  
Sbjct: 324 GKIRAVVGMLADKDIA-----GTLAYLTPLVDEWYCAPLEGPRG----ATAQQIAEHLTC 374

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                N + A + A+    +QD+++V G
Sbjct: 375 SQSFPNVVTAWQQAMSEATEQDIVIVCG 402


>gi|300950241|ref|ZP_07164180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 116-1]
 gi|300957152|ref|ZP_07169391.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 175-1]
 gi|300316096|gb|EFJ65880.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 175-1]
 gi|300450431|gb|EFK14051.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 116-1]
          Length = 445

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 104/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL   +   +   
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESNFFVIEAD 148

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 149 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +GI  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGIAPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|295098049|emb|CBK87139.1| folylpolyglutamate synthase/dihydrofolate synthase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 422

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 119/382 (31%), Gaps = 34/382 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            + A     K    +  V GT+GK +    ++ +   +G           +    +    
Sbjct: 37  QVAARLDVLKPAPFVFTVAGTNGKGTTCRTLESVLMAAGYKVGVYSSPHLVRYTERVRVQ 96

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
            T     LA++    S   +     E S    +   L  + L   +  ++    +     
Sbjct: 97  NT----ELAESAHTASFAAIEAARGETSLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR 152

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       +                D  S    K       +   VG       + +V
Sbjct: 153 LDATNMVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRANKPAVVGEPDMPHTIAEV 212

Query: 283 CA--------IHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGID 328
                          Q  +  +G  F          PLP   Q   A   A L  +    
Sbjct: 213 AKEKGARLLRRGLDWQYEVQDKGWRFSDAQGVLENLPLPQVPQPNAATALAALRASGLAV 272

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVV 387
           S   +    +  ++PGRF+ V  + R   + +D AH  ++   +   ++++   GR++ V
Sbjct: 273 SEQAIRDGIQNALLPGRFQIVSESPR---LILDVAHNPHAAAYLAGRLKSLPKTGRVLAV 329

Query: 388 FGCGGDRDQGKRPIMGKIALDLA--DIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            G   D+D G     G +A   +  D       + PR    E++   +  G        +
Sbjct: 330 IGMLHDKDIG-----GTLACMESVVDSWYCAPLEGPRGATAEQLMEHLGKG----EIYSS 380

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
            + A R A+     +D ++V G
Sbjct: 381 VVSAWRAAMAEAKPEDTVLVCG 402


>gi|269960901|ref|ZP_06175271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi 1DA3]
 gi|269834341|gb|EEZ88430.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi 1DA3]
          Length = 452

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 113/355 (31%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D   ++V++R      +              K+    +K +V
Sbjct: 205 HHLVRTVPGNGLILAPKQDQSLQDVIERGCWTEKQF---SGVDGDWQAHKLVVDGSKFEV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           ++  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 SLQGE-KVGVVDWDLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 EL-GVTVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      ++I  +                 +   +E     D ++V
Sbjct: 380 ADEVFLFQPDNIDWSVQEIADQCKQ---PAFVDAEMDSFVAKIVEQAQPGDQILV 431


>gi|91228830|ref|ZP_01262736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio alginolyticus 12G01]
 gi|91187601|gb|EAS73927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio alginolyticus 12G01]
          Length = 452

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 111/355 (31%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R      +      +       K+    +K  V
Sbjct: 205 HHLVRTVPGNGLILAPRKDQALADVLERGCWTEKQF---SGENGDWQAHKLVLDGSKFDV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 ALQGE-KVGTVEWNLVGDHNVDNALMAIAAARHVGVTPDLACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ +  +R     + I+           +      +A  L  
Sbjct: 321 EQ-GVTVYDDFAHHPTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAESLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + I  +            +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQ---CTQPAFVDADIDNFVAKIVERARPGDQILV 431


>gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD]
          Length = 741

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 99/308 (32%), Gaps = 18/308 (5%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
             +   L+VD+T KFL   A      H    + +TG++GK+ V  ++ Q           
Sbjct: 3   NEHLSWLIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVKS 62

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
               ++            P                V    V  S                
Sbjct: 63  PKSFNSQIGLPLSLLNIKPE-------------HKVGIFEVGISEPNEMTTLETIFSPKI 109

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
           G  T++G  HI   ++++   + K       L K+S +II+  D            +   
Sbjct: 110 GVLTHIGSAHISNFKSEKHLVDEK-----ISLFKDSESIIFNGDNILVSNKINTLYSSKN 164

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++S G+               +Q +T+    K F F      E  + N L    +   + 
Sbjct: 165 LISYGFNKDNNIHISSNWKDRQQPITVQCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLE 224

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +  ++E +  L  V  R E V        I   +    +SL++  + I++    +  +
Sbjct: 225 FSTEKMIEKINNLKAVEMRLESVNGIKNNLIINDSFNLDLDSLKIAFEFIKSYQKPKKSL 284

Query: 387 VFGCGGDR 394
           +     ++
Sbjct: 285 IITDFTEK 292


>gi|291085087|ref|ZP_06351995.2| FolC protein [Citrobacter youngae ATCC 29220]
 gi|291071895|gb|EFE10004.1| FolC protein [Citrobacter youngae ATCC 29220]
          Length = 461

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 112/377 (29%), Gaps = 42/377 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  V GT+GK +    ++ +   +G           +    +        P    
Sbjct: 85  KPAPFVFTVAGTNGKGTTCRTLESVLSAAGFKVGVYSSPHLVRYTERVRIQGGELPESAH 144

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A      +    +S+       +   L  + L   +  ++    +       A      
Sbjct: 145 TASFAEIEEARGDISLTY----FEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDA 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--------C 283
            +                D  S    K       +   VG       +  V         
Sbjct: 201 DVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPYTIADVAQECGAILQ 260

Query: 284 AIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 + T++     F          PLP   Q   A   A L  +    S   +    
Sbjct: 261 RRGVDWRYTVTENDWSFTDAHGTLAHLPLPQVPQPNAATALAALRASGLNVSEQAIREGI 320

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQ 396
           +  ++PGRF+ V  + R   +  D AH  ++ E +   ++ +   GR++ V G   D+D 
Sbjct: 321 EQAILPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKKLVKSGRVLAVIGMLHDKD- 376

Query: 397 GKRPIMGKIALDLA------DIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
                   IA  LA      D+      + PR    E++   +  G       G+  +A 
Sbjct: 377 --------IAGTLAWLKSVVDVWYCAPLEGPRGATAEQLLEHLGKG----EAYGSVAQAW 424

Query: 450 RTAIEMLNKQDVLVVAG 466
             A+     +D ++V G
Sbjct: 425 SAALAEAKPEDTVLVCG 441


>gi|260772145|ref|ZP_05881062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
 gi|260613012|gb|EEX38214.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
          Length = 466

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 102/355 (28%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ AS +  I ++ G    F +G        +     +    +   
Sbjct: 114 QDRWVLAVAGTHGKTTTASMLTWILEQCGYQPGFLVGGVLGNFDLSARLGESMFFVVEAD 173

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 174 EYDSAFFDKRSKFV---------------HYHPRTLILNNLEFDHADIFDDLEAIK---- 214

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             +    + GC         +     K       Q  
Sbjct: 215 -RQFHHLIRTLPGNGRVFAPQQDSALADVLSRGCWSEREFIGQQGQWQAKKHNPQGSQFA 273

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               + +  D  + L G+  V NAL+A      +G+   L  + L        R E  G 
Sbjct: 274 VYFQDQRVGDVEWSLIGDHNVNNALMAIAAARHVGVTPDLACQALASFINTKRRLEQKGQ 333

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R       I+                G +A     
Sbjct: 334 E-NGVTVYDDFAHHPTAIELTLSGLRNKVGSEKIIAVVEPRSATMKLGVHKGTLAASFAQ 392

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   N  +   +++  +            + +E I  A         ++V
Sbjct: 393 ADSVYLFQPNELAWSVDEVAQQCSSPAYVSNNIDDLVERICAA---AKPGTHILV 444


>gi|328471888|gb|EGF42765.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 10329]
          Length = 452

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 108/355 (30%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +    A  
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLE----AIK 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R F  L+       +       + +                +       K+    +K +V
Sbjct: 202 RQFHHLVRTVPGNGLILAPKQDQALADVLECGCWTERQFSGEDGDWQAHKLVLDGSKFEV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 ALQGE-KVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 EQ-GITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + I  +            +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPDNIEWSVQDIAEQCKQ---PAFVDADIDNFVAKIVERAQPGDQILV 431


>gi|318042232|ref|ZP_07974188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CB0101]
          Length = 462

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 118/364 (32%), Gaps = 33/364 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
               +          + +TGT+GK++V   +  + +++GL +   G     ++     R 
Sbjct: 103 GEITTAWEASAGVPWIGITGTNGKTTVTHLIAHLLEQAGLDAPMCGNVGFSAAELALARS 162

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              +P +L                VE SS+ ++      +    G +T L  DH++ H T
Sbjct: 163 GANAPTWL---------------VVELSSYQIES--APALAPRIGVWTTLTPDHLERHGT 205

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y        +  L + S   +   D         + +    V +   +       + 
Sbjct: 206 LDNYR-----AIKRSLLEHSTVRVLNADDPDLRSRAASWDQARWVTAESREQARAAGIEP 260

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  QV  +           +PG     N L+A  + + +G+ +  +   L     V
Sbjct: 261 HLWIEANQVCQASGPLLPADALAMPGAHNRQNMLMAVAVGLEVGLSAEQMAAALRCFPGV 320

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +             A   ++ E+ L+ ++        +V   GG+  QG+    
Sbjct: 321 PHRLELIRERDGVRWFNDSKATNYDAAEVALRALQG------PLVVLAGGEAKQGEAAGW 374

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV- 461
                  A   ++      + D  +   E  H            EA+  A  +  +Q+  
Sbjct: 375 LAGLEREARAVVL---FGAARDTFQQLLEASHYSGAVHRVAGLSEAVPLAQRLAAEQNCR 431

Query: 462 -LVV 464
            +++
Sbjct: 432 AVLL 435


>gi|293393178|ref|ZP_06637493.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia odorifera DSM 4582]
 gi|291424324|gb|EFE97538.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia odorifera DSM 4582]
          Length = 459

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 102/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYQPGFV-IGGVPGNFEVSARLGGSPFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +        V  S   L  +             NL  DH D     +A        
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         + +           +    
Sbjct: 203 QFHHLVRLVPGKGKIILPDNDPHLKQVMAMGCWSEQELVGEEGVWRANKLTADASRYEVQ 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LNGETVGEVNWTLVGEHNMHNGLMAIAAARHVGVLPADACRALNDFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC------GGDRDQGKRPIMGKI 405
            G  +Y D+AH   ++   L  +R    G  RI+ V          G       P +G+ 
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGINKNELAPSLGR- 380

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +   +     P ++       +       +    +   ++     D ++V
Sbjct: 381 ----ADEVFLFQPHH---IPWQVAEVAEACVQPAHWSADVDTLVEMVVKTAQPGDHILV 432


>gi|168187029|ref|ZP_02621664.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
 gi|169295057|gb|EDS77190.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
          Length = 458

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 94/274 (34%), Gaps = 14/274 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+D+++      N     F +L+P +   I+ ADD     V K    
Sbjct: 178 YPYVGIILNIEADHLDFYKDINDIQNT-FLKFAKLIPSDGFLIVNADDERCIAVSKEV-- 234

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGL 321
             C V++ G     +  K +   +      +    +  F     +PG   + +AL +   
Sbjct: 235 -DCNVITFGIDNGEVRAKNIVFTNGHPTFDVCKNEEKLFTLTLNVPGTHNILDALASISS 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++ +    ++E L   +    RFE  G    G  +  DYAH    ++  L   +    
Sbjct: 294 ALSLNVPVNSIIEGLSTFNGAHRRFEIKG-KVDGITVVDDYAHHPTEIKAALNAAKNFPH 352

Query: 382 GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR------AEIIH 434
            RI  VF      R           +   AD  ++ D     E    I        +I  
Sbjct: 353 KRIFCVFQPHTYSRTISLFDDFSN-SFSNADTLVLADIYAAREKDTGIVSSDMLGDKIRE 411

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    +  + +    + L + D+L+  G G
Sbjct: 412 NGVNCKNLHSFDDIVTFLKDELQEGDLLITIGAG 445


>gi|167945041|ref|ZP_02532115.1| UDP-N-acetylmuramate--L-alanine ligase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 286

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 6/229 (2%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +    TN+  DH+  +        A    F   LP    A++  DD   + ++ +  
Sbjct: 23  LQPMLSVVTNIDADHMATYGGDFERLRAAFLEFLHHLPFYGLAVLCIDDPEVRRLLPKVT 82

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                              +   +  + ++      +       +PG   V NAL A  +
Sbjct: 83  RRIRSYGFSEDADVRAVDVEQQGLTTRFRLECEGWERGQQISLNMPGRHNVLNALAAVAV 142

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIRT 378
            + +G++ A +   L+    +  RF+  G          +  DY H    +   L+ +  
Sbjct: 143 ALELGVEPAAIQRALQSFQGIGRRFQTKGECRCAAGQVLLVDDYGHHPREIAATLQAVHE 202

Query: 379 ITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              GR IV+        R Q +     ++    AD+ ++T+     E P
Sbjct: 203 GWPGRRIVLAFQPHRFSRTQEQFDDFVQVLSQ-ADVLLLTEVYAAGEAP 250


>gi|302332788|gb|ADL22981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 449

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR      ++  +    A +  
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVRAMVVF 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   K            IE  N  +A+    +++   DV+++
Sbjct: 376 -------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|282918881|ref|ZP_06326616.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
 gi|282316691|gb|EFB47065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
          Length = 449

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR      ++  +    A +  
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVRAMVVF 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   K            IE  N  +A+    +++   DV+++
Sbjct: 376 -------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|229087020|ref|ZP_04219174.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-44]
 gi|228696283|gb|EEL49114.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock3-44]
          Length = 433

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 91/311 (29%), Gaps = 20/311 (6%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +        V  E    G    R D   +I    T +     D+   
Sbjct: 120 TEFEIITVMAIYYFGKINFCDIVLFETGLGG----RFDSTNVIHPVLTMITNIGHDHMHI 175

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HNAGCRVLSVGYQGKFIHLKK 281
                         ++    P I    D  +  V+++        +  +G Q   IH + 
Sbjct: 176 LGNTLGEIAYEKAGIIKSGVPIITGVQDEEALHVIQKIAEEKNANLYELGKQFTAIHQRS 235

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEK 338
                +          ++         +       +  G+ +   +        +     
Sbjct: 236 DEDGEHFDFSCPFASFEEIRISMKGSHQVGNAALALMGGMYLKTYLSFLLEEERIRVGLS 295

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQG 397
                GRFE + +      + +D AH    +  ++K ++   + + ++V F   GD+   
Sbjct: 296 EAYWVGRFEQLQSKPD---VIIDGAHNPEGIASLVKTVKAHYNDKNVIVLFTALGDKQLD 352

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEM 455
               M      +AD  I T     + D      E+         +   N  EAI   +  
Sbjct: 353 N---MVGPLETVADEMIFTT---FTFDRAISAKELAAHSSKETKLVFENWKEAIDIKMNT 406

Query: 456 LNKQDVLVVAG 466
           L + DV ++ G
Sbjct: 407 LQENDVFIITG 417


>gi|49483346|ref|YP_040570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425237|ref|ZP_05601662.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427897|ref|ZP_05604295.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430530|ref|ZP_05606912.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433291|ref|ZP_05609649.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436133|ref|ZP_05612180.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903735|ref|ZP_06311623.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905499|ref|ZP_06313354.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908474|ref|ZP_06316304.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910756|ref|ZP_06318559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913959|ref|ZP_06321746.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924004|ref|ZP_06331680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|283957926|ref|ZP_06375377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500992|ref|ZP_06666843.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509950|ref|ZP_06668659.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526539|ref|ZP_06671224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427669|ref|ZP_06820301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297591373|ref|ZP_06950011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|60390436|sp|Q6GHQ2|MURD_STAAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49241475|emb|CAG40161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271694|gb|EEV03832.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274738|gb|EEV06225.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278658|gb|EEV09277.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281384|gb|EEV11521.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284415|gb|EEV14535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313976|gb|EFB44368.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322027|gb|EFB52351.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325361|gb|EFB55670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327536|gb|EFB57819.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330791|gb|EFB60305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595353|gb|EFC00317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790075|gb|EFC28892.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920611|gb|EFD97674.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095997|gb|EFE26258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467400|gb|EFF09917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128027|gb|EFG57661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297576259|gb|EFH94975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438440|gb|ADQ77511.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315194069|gb|EFU24462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 449

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR      ++  +    A +  
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVRAMVVF 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   K            IE  N  +A+    +++   DV+++
Sbjct: 376 -------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|15924173|ref|NP_371707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926766|ref|NP_374299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650295|ref|YP_186059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750790|ref|YP_416531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus RF122]
 gi|87160865|ref|YP_493774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194889|ref|YP_499689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267675|ref|YP_001246618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393733|ref|YP_001316408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221305|ref|YP_001332127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979504|ref|YP_001441763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509360|ref|YP_001575019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140645|ref|ZP_03565138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253733578|ref|ZP_04867743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005970|ref|ZP_05144571.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795761|ref|ZP_05644740.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|258415985|ref|ZP_05682255.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|258419732|ref|ZP_05682699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|258438774|ref|ZP_05689927.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|258444520|ref|ZP_05692849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|258447647|ref|ZP_05695791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|258449489|ref|ZP_05697592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|258451881|ref|ZP_05699902.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|258454868|ref|ZP_05702832.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|262048756|ref|ZP_06021638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|269202798|ref|YP_003282067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282892669|ref|ZP_06300904.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|282916433|ref|ZP_06324195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919964|ref|ZP_06327693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282929228|ref|ZP_06336803.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|283770245|ref|ZP_06343137.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|284024107|ref|ZP_06378505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848176|ref|ZP_06788923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|295407121|ref|ZP_06816922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|296276141|ref|ZP_06858648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245993|ref|ZP_06929852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|304381257|ref|ZP_07363910.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|60392791|sp|P0A089|MURD_STAAM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392792|sp|P0A090|MURD_STAAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392793|sp|P0A091|MURD_STAAU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900659|sp|Q5HGP8|MURD_STAAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063260|sp|Q2FHQ4|MURD_STAA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063261|sp|Q2FZ92|MURD_STAA8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063262|sp|Q2YXD9|MURD_STAAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224766|sp|A7X1C4|MURD_STAA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|172048845|sp|A6QG83|MURD_STAAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082916|sp|A6U103|MURD_STAA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082917|sp|A5IS69|MURD_STAA9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082918|sp|A8Z3M4|MURD_STAAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2271510|gb|AAC46291.1| UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase [Staphylococcus
           aureus]
 gi|13700982|dbj|BAB42278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246953|dbj|BAB57345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|57284481|gb|AAW36575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus COL]
 gi|82656321|emb|CAI80735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus RF122]
 gi|87126839|gb|ABD21353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202447|gb|ABD30257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740744|gb|ABQ49042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946185|gb|ABR52121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374105|dbj|BAF67365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721639|dbj|BAF78056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160368169|gb|ABX29140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253728448|gb|EES97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789733|gb|EEV28073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|257839321|gb|EEV63795.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|257844317|gb|EEV68699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|257848033|gb|EEV72026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|257850013|gb|EEV73966.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|257853838|gb|EEV76797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|257857477|gb|EEV80375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|257860489|gb|EEV83316.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|257863251|gb|EEV86015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|259163212|gb|EEW47772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|262075088|gb|ACY11061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940677|emb|CBI49056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282319873|gb|EFB50221.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282589187|gb|EFB94284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|282594680|gb|EFB99664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282764666|gb|EFC04791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|283460392|gb|EFC07482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470393|emb|CAQ49604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ST398]
 gi|285816865|gb|ADC37352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus 04-02981]
 gi|294824976|gb|EFG41398.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|294967974|gb|EFG44002.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|297177157|gb|EFH36411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|302751006|gb|ADL65183.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340240|gb|EFM06181.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312829577|emb|CBX34419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130974|gb|EFT86958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196913|gb|EFU27256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141002|gb|EFW32849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143058|gb|EFW34848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323440955|gb|EGA98662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O11]
 gi|323442272|gb|EGA99902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O46]
 gi|329313851|gb|AEB88264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725034|gb|EGG61530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329727477|gb|EGG63933.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 449

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR      ++  +    A +  
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVRAMVVF 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   K            IE  N  +A+    +++   DV+++
Sbjct: 376 -------GQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|269838017|ref|YP_003320245.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787280|gb|ACZ39423.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 481

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 98/279 (35%), Gaps = 11/279 (3%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  ++     G+       TN+  DH++ + +  AY  AK ++     P +   + 
Sbjct: 178 IELSSWQIEGLAEHGLSPHVAVITNISEDHLNRYPSMAAYVEAKRQIARYQGPDDWLVLN 237

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD  + E               G             +       + +  +D    FPL
Sbjct: 238 R-DDPLAWESRSAGAGRVVPFGMAGDAPAGAFRDGDRLVWRWDGSEVELLRRD---EFPL 293

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL AA   I  G D A V   L     VP R E V T      +    A   
Sbjct: 294 PGDHAVANALAAAAAAILAGADPAQVRTGLLAATPVPHRQEIVATIDGVCYVNDTAATAP 353

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L   R    GR +V+   G  +     P M +     A   ++ D     +   
Sbjct: 354 AAAVAALDTFR----GRPLVLIAGGAAKGADLGP-MARRVAAEASAVVLLDGTATPDLHA 408

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++R      I G     +  +A+R A E+     V+++A
Sbjct: 409 RLRDAGAARISGPHR--SMEDAVRAAAELATPGGVVLLA 445


>gi|262402658|ref|ZP_06079219.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           RC586]
 gi|262351440|gb|EEZ00573.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           RC586]
          Length = 421

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 118/370 (31%), Gaps = 26/370 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +        P  + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINGKDLPDEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG-------LDQHRLDGIKLIAGSFTNLG----RDHIDYH 220
                   Q    VS+     G        +Q ++D + L  G    L      DH    
Sbjct: 106 TQAFAHIEQERGEVSLSLFEFGTLAALYLFEQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            T  A  +      +  +     A I+     +     +                     
Sbjct: 166 ITSLALDHTDWLGNDITVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +       +       G+      P+P       A     L  +    S + +    +  
Sbjct: 226 QFSYEKTSETTWHWRSGRFELTDLPIPSLPLPNAATALMALGCSGLEISDIDVVEGLRHA 285

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
            + GR + +        I +D AH  +S   +++ ++     R+I +V G   D+D    
Sbjct: 286 QLAGRMQLISREPI---IVLDVAHNPHSAHYLVEQLKQRYPQRVIHLVLGMLHDKD---- 338

Query: 400 PIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML 456
             +    ++L    +VT   P S          ++   +P G I+  N + A   A+   
Sbjct: 339 --IASTVMEL--NPVVTHWYPASLSGPRAATAEQLCQYLPAGNIQYANPVAAFEAALTQA 394

Query: 457 NKQDVLVVAG 466
           + QDV+VVAG
Sbjct: 395 SAQDVIVVAG 404


>gi|326624190|gb|EGE30535.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 422

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 117/391 (29%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPT 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V            V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SRLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   + ++A + AI+    +D ++V G
Sbjct: 376 N----VYDSVVQAWQAAIDAAQPEDTVLVCG 402


>gi|271502041|ref|YP_003335067.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
 gi|270345596|gb|ACZ78361.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
          Length = 486

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 138/424 (32%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA +  +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVTSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGH 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           A++  DDA  +E++ +                   +     +  +   T++ +GK   + 
Sbjct: 227 AVMCLDDAVIRELLPKVGRHITTYGFSEDADV--RVADYRQVGAQGLFTLARQGKPLLNV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------ 356
               PG     NA  A  +    GID   +L  L +      RF+F+G            
Sbjct: 285 TLNAPGRHNALNAAAAVAVATEEGIDDEAILRALVRFQGTGRRFDFLGEFPLQPVNGKSG 344

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DY H    ++  +K  R     + +V+        R +        +     D+
Sbjct: 345 SAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQ-VDV 403

Query: 413 AIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++ D  P  E P        +   I   G    I   +         + L   D+++V 
Sbjct: 404 LLMLDVYPAGEAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|322420913|ref|YP_004200136.1| FolC bifunctional protein [Geobacter sp. M18]
 gi|320127300|gb|ADW14860.1| FolC bifunctional protein [Geobacter sp. M18]
          Length = 424

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 118/384 (30%), Gaps = 28/384 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           SL A+    +     + V GT+GK S ASF+  I    G  +        IS   +    
Sbjct: 27  SLLAALGNPQDAFKTVHVVGTNGKGSTASFLASILSAGGYRTGLFTSPHLISFTERIRIN 86

Query: 163 TTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQ---------------HRLDGIK 203
            T       + LA+A+   + Q  T   +  +   L                  RLD   
Sbjct: 87  GTEIEEAEVVRLAEAVMAAAPQESTFFEIVTALAVLYFAEAGVEIAVFEAGMGGRLDATN 146

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
            ++G    +    +++                 +    +P ++      ++ +++     
Sbjct: 147 ALSGVLCAIAPISLEHTDYLGKTIEDIAAEKAGICKPGAPVVLARQIPEAQFIIEHLAAQ 206

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               L    +            +    VT+          +   G   +  A       +
Sbjct: 207 LDAPLYRQGESFDAFWLDRLLCYRGIGVTLDALNSGLLGRY-QSGNAALALASAELLRTV 265

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +    ++  +   H  PGR E         R+ +D AH       + + +  I   +
Sbjct: 266 GFPVSPQAMIAGVANAHW-PGRMELFPG---PPRVLLDGAHNPAGAAALAEALAEIPRQK 321

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           + +V G   D++      +    L LAD    V     R+    ++           +E 
Sbjct: 322 LFLVAGVMADKEVSG---ILAPLLPLADRVFAVAPALERALPAGELAIHCFAAGVETMEA 378

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
           G+  E I  A  +    D+++V G
Sbjct: 379 GSVAEGIELAKNLAQDDDLILVCG 402


>gi|227327254|ref|ZP_03831278.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 422

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 119/395 (30%), Gaps = 48/395 (12%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V    + L L       +    I  V GT+GK +    ++ I   +GL          +
Sbjct: 34  RVKQVAEHLQLL------QPAATIFTVAGTNGKGTTCCTLESILLAAGLRVGVYSSPHLV 87

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +        P  L          G   +S+       +   L  ++L   +  ++ 
Sbjct: 88  RYTERVRIQGKELPEALHTQAFADIEAGRGAISLTY----FEFGTLSALQLFKQANLDVV 143

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +       A       +               +D  S    K       R   VG  
Sbjct: 144 ILEVGLGGRLDATNIVDADVSVVTSIAIDHTDWLGNDRESIGREKAGIFRQGRPAVVGEP 203

Query: 274 GKFIHLKKV------CAIHNKQQVTISVEGKDFDFL--------FPLPGEFQVYNALVAA 319
                +  V            +    S++ + + +          PLP       A   A
Sbjct: 204 DMPETIADVAVEKGAQLRRRGRDWEYSMQRETWSWQDKQRELSRLPLPNVPLANAATALA 263

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  +    S   +    +   +PGRF+ V  + R   + +D AH  ++   +   +  +
Sbjct: 264 ALHYSSLNVSEEAIRQGLQHAALPGRFQTVQASPR---LILDVAHNPHAAAYLANRLVGL 320

Query: 380 -TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAE 431
             +G++  V G   D+D         IA  LA +  V D+        PR         +
Sbjct: 321 SKTGKVRAVVGMLSDKD---------IAGTLAHLTPVVDEWYCAPLEGPRG----ATAQQ 367

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           I   +       + + A + A+    +QD+++V G
Sbjct: 368 IAEHLTRSQSFPDVVTAWQQAMSEATEQDIVIVCG 402


>gi|254361262|ref|ZP_04977405.1| tetrahydrofolate synthase [Mannheimia haemolytica PHL213]
 gi|153092758|gb|EDN73801.1| tetrahydrofolate synthase [Mannheimia haemolytica PHL213]
          Length = 433

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 114/382 (29%), Gaps = 35/382 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSPIY 169
           K    ++ V GT+GK S    ++    ++G           I    +        P   +
Sbjct: 46  KPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPDADH 105

Query: 170 LAKALSYLSSQGVTHVSVEASS---------HGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
           +       + +  +    E S+         + LD   L+         TN+    +   
Sbjct: 106 VQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDPSLAVI 165

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
            +      A +    E + +E   I   +      + +       + ++        +  
Sbjct: 166 ISIDIDHVAFLGDNREDIGREKAGIFRENIPVV--IGEPDCPHSIKQIADSLNCHAFYRG 223

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           K      K  +      +      P+P           A L          ++       
Sbjct: 224 KDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKIIRQALNEA 283

Query: 341 VVPGRFEFVGTNSRGGRI--------YVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGC 390
            + GRF+ +                  +D  H  ++   +   +R +   + +I  VF  
Sbjct: 284 QMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPNQKIYAVFSA 343

Query: 391 GGDRDQGKRPIMGKIALDLADIA----IVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GN 444
             D+D         I   LA+I         D  R +  E + A++++ +P        N
Sbjct: 344 LEDKDLSG------IVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTACSYEN 397

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             +A R   E  N+ D+++V G
Sbjct: 398 VAQASRVLFETANENDIVLVFG 419


>gi|33151877|ref|NP_873230.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Haemophilus ducreyi 35000HP]
 gi|33148098|gb|AAP95619.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Haemophilus ducreyi 35000HP]
          Length = 459

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 111/364 (30%), Gaps = 45/364 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK+S    +  I  ++G+ + F IG  +     +     T    I   
Sbjct: 104 KDRWVLAVAGTHGKTSTTGMLAWILDQNGIDTGFLIGGVAGNFGISARIGSTKFFVIEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A    + 
Sbjct: 164 EYDSAFFDKRSKFV---------------HYSPRTLVINNLEFDHADIFADLAAIQR-QF 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P+    +    D  ++ V+K  + +  +            L            
Sbjct: 208 HNLVRTIPQSGCILSSITDQNTQAVLKMGNYSELQFSGQDQTWFAQPL----VADCSAFE 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K     + + G   ++NAL+A       G+      + L     V  R E  G 
Sbjct: 264 VHYQGNKAGQVQWNVIGAHNMHNALMAIAAAHHSGVSITGACQALASFVNVQRRLEVKGV 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMG----KIA 406
                 +Y D+AH   ++   +  +R  +   RI+ V        +     MG    ++A
Sbjct: 324 -VNNITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEP-----RSNTMKMGVHKHELA 377

Query: 407 LDL--ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQD 460
             L  AD   +         P  I    +E++  +    I   +  E +   ++     D
Sbjct: 378 TSLQDADSVFIYQ-------PPTIEWQVSEVLANLAQPAISADDVDELVMRIVQQAKPND 430

Query: 461 VLVV 464
            +++
Sbjct: 431 HILI 434


>gi|227509379|ref|ZP_03939428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227191091|gb|EEI71158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 128/364 (35%), Gaps = 45/364 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+++       I+ VTG++GK++  + + +I              +   S  +    +
Sbjct: 104 ELAAQMTD---AEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGNIGVSATETALKS 160

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T                    + +E SS  L    +  +       TN+  +H+DYH+T+
Sbjct: 161 TAD----------------DTIVMELSSFMLL--GIKKLHPHVAVLTNIFSNHLDYHKTR 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y NAKMR+     P +   + +  D + + + KR+              +  + K   
Sbjct: 203 KNYVNAKMRITMNQTPDDFFVVNFDSDEWRQ-LSKRSKAQIVPFARTSEIDRGAYEKNGK 261

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +N + +  + + K       +PG+  V NAL A      +G  +  +   LE    V 
Sbjct: 262 LYYNDEFIMNADDIK-------VPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVR 314

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +FV             A     +E     +        +V+   G DR      ++ 
Sbjct: 315 HRVQFVLEADGRKFYNDSKAT---DIEATQIALEGFDH--PVVLLAGGLDRGYTFDKMVP 369

Query: 404 KIALDLADIAIV---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +        A++   T D    E  +K       G+    +  N  EA+  A    +  D
Sbjct: 370 QF-KQHVKAAVLFGQTAD-LLEESLQK------AGVKNITKVDNLDEAVPAAYHYSDSGD 421

Query: 461 VLVV 464
           ++++
Sbjct: 422 IILL 425


>gi|157412360|ref|YP_001483226.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157386935|gb|ABV49640.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 468

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 98/339 (28%), Gaps = 25/339 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +T     L       SS     + +  S+  L+    L      +    N  +  I    
Sbjct: 131 STFLSTILELCTHDSSSITGGIIPIYNSNCHLENTKYLVAEVDESDGTINQYKSDIGIIN 190

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                         E++         +         + + N                   
Sbjct: 191 NIDFDHCDHFSDLNEVISSFRSFAKNSKKLLLNFDCETSRNNFFSNSKWSNTTTKNVAYA 250

Query: 282 VCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           +       + TI    +  +F      P+PG   + N   A      IG+D   +  +++
Sbjct: 251 IIPTQINSKYTIGKYYEHGNFVSNLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKRNIK 310

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR---------TITSGRIIVVF 388
            L +   RFEF G  +    +Y DYAH  N ++  +K  +              R+I +F
Sbjct: 311 YLKLPKKRFEFRGQINE-RLLYDDYAHHPNEIKETIKLGKLFIKQKNNNEFQKSRLIAIF 369

Query: 389 GCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIE 441
                 R +       +     AD+  VT      E+ E       I   I         
Sbjct: 370 QPHRYSRVKQFTREFAEELSK-ADVIYVTSIYGAGEENEDRITSKIITDLIYKKNKNVCY 428

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG--HETVHIVTNG 478
             N  +      E+  K D+++  G G  H+   I+   
Sbjct: 429 INNYHKITENFYELTQKGDLILNMGAGDCHDFWSILKEK 467


>gi|110598580|ref|ZP_01386848.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium ferrooxidans DSM
           13031]
 gi|110339814|gb|EAT58321.1| UDP-N-acetylmuramate--alanine ligase [Chlorobium ferrooxidans DSM
           13031]
          Length = 471

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 86/279 (30%), Gaps = 16/279 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +        +L  +H+D + T      A    F   +P     I   D    ++++    
Sbjct: 173 LTPTIAIVNSLESEHMDTYGTLDDLKQA-FIAFANKVPFYGRVICCVDWPEIRKII--PS 229

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAG 320
                      +   +    +     +   T+   G ++      +PG   V NAL A  
Sbjct: 230 LDRVYTTFGIEEPADVMAYDIVLEKQRSTFTVRAFGIEYRDVSINVPGRHNVLNALAAFS 289

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
             + +GI    ++  L     +  RF+    N +G  +  DYAH  + ++  +K  ++  
Sbjct: 290 TGLELGIAPERLIVGLACYSGMRRRFQVKFDNGKGLMVVDDYAHHPSEVKATVKAAKSGW 349

Query: 380 TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK---------IR 429
              R++ VF      R +      G      ADI  + D  P  E               
Sbjct: 350 VDSRVVAVFQPHLFSRTKEFADEYGWALSR-ADIVFIADVYPSREKAVDYPGVDGTLVST 408

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           A    G         R        E      +L+  G G
Sbjct: 409 AVRKAGGKHVEFIAERASLFAALKEYAVDGTMLLFMGAG 447


>gi|227504036|ref|ZP_03934085.1| possible tetrahydrofolate synthase [Corynebacterium striatum ATCC
           6940]
 gi|227199366|gb|EEI79414.1| possible tetrahydrofolate synthase [Corynebacterium striatum ATCC
           6940]
          Length = 511

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+      ++D  H  +  + +   + R     R+I V G   D+D      
Sbjct: 368 PGRLERVRTSPT---TFIDACHNPHGAKALGAALDRDFDFARLIGVLGIFEDKDAEG--- 421

Query: 402 MGKIALDLADIAIVT-DDNPRSEDP---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML- 456
           +           ++T + +PR+ D     ++  +I  G      + +   A   A+E+  
Sbjct: 422 ILTALEPYLTEVVITQNSSPRARDAYELAELARDIF-GEERVYVEPDLPGAYAQAVELAE 480

Query: 457 ----NKQDVLVVAG 466
                    +V+ G
Sbjct: 481 DAEVQSGSGIVITG 494


>gi|94676482|ref|YP_588948.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|166222957|sp|Q1LSW6|MURC_BAUCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94219632|gb|ABF13791.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 490

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 124/376 (32%), Gaps = 46/376 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           A  +VVSSA S+ +           PI+    TR   L+      YG      +A+ GT 
Sbjct: 79  ANVVVVSSAISIANPEIVAAKKLRIPII----TRAEMLAELMRFRYG------IAIAGTH 128

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  + +  I   +GL    +     I S  Q  RL   S                 +
Sbjct: 129 GKTTTTAMLASIYLEAGLDPTIV-NGGLIKSIGQYARLGYGS-----------------Y 170

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA    L       ++ I    TN+  DH++ +Q    Y       F   LP     
Sbjct: 171 LIAEADESDLS---FLHLQPIVTIITNIEADHMENYQGDFNYLKNTFLKFIHKLPFYGKG 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           I+  DD   ++++               +  F          +        +        
Sbjct: 228 IMCLDDPVIRDLLPHISRH-IITYGFNSKANFRLTNYHQKEAHVSFQLYRQDKPTLRIEL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-------- 356
             PG     NA+ A  +    GI    +L+ L +   +  RF+ +G  S           
Sbjct: 287 NSPGRHNALNAVAAIAVATEEGIADKNILQALFRFKGINRRFDKLGCFSLKKINGKNGVV 346

Query: 357 RIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAI 414
            +  DY H    L+  ++++R      R+++VF      R +        +     D+ +
Sbjct: 347 MLVEDYGHHPTELQATIQSVRIGWPDKRLVMVFQPHRYTRTRDLYEYFVGVLSK-VDVLL 405

Query: 415 VTDDNPRSEDPEKIRA 430
           + D  P  E+P     
Sbjct: 406 MLDIYPAGENPIAGID 421


>gi|88812510|ref|ZP_01127759.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
 gi|88790296|gb|EAR21414.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
          Length = 457

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 126/410 (30%), Gaps = 39/410 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V +A S  + +     +  +L            A  +  +    +LAVTGT GK++ 
Sbjct: 64  CVLVGNALSRGNPALEQVLDQRLLYTSGP----QWLAEEVMRE--RWVLAVTGTHGKTTT 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  I + +GLS   +       +F    RL +     +       +           
Sbjct: 118 SSLLAWILEYAGLSPGFL-IGGVPGNFGYSARLGSGDLFVIEGDEYDTAFFD-------- 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                 + +    +       NL  DH D      A    +       +P     I   D
Sbjct: 169 -----KRSKFIHFRPRTVVINNLEFDHADIFPDLAAIQR-QFHYLIRTVPSTGLIIANGD 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D    + +             G    +             + T++ +G++     PLPGE
Sbjct: 223 DQTITDTLALGCWTPVIRFGTGVNNDWRL---EAIDGPNARATLTGKGQNRAITLPLPGE 279

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A       G+     +E L     V  R E  G    G  +Y D+AH   ++
Sbjct: 280 HNARNILAALLAAQHTGVTLDQGIEALRHFRGVRRRLERRG-IVGGVELYDDFAHHPTAI 338

Query: 370 EMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
              +  +R    GRI+ V     +  R    R  +       AD   V    PR+ +   
Sbjct: 339 AATIAALRGRHQGRILAVLEPRSNTMRLGVHRNTLAASLQQ-ADRVFV--YRPRTLEWN- 394

Query: 428 IRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
              +    +     +   +    I          D ++V   G     HE
Sbjct: 395 -LEDAFAPLLGERALITEDIECLIDYITAAAQIGDAVLVMSNGAFENIHE 443


>gi|326795769|ref|YP_004313589.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
 gi|326546533|gb|ADZ91753.1| UDP-N-acetylmuramate--L-alanine ligase [Marinomonas mediterranea
           MMB-1]
          Length = 476

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 111/365 (30%), Gaps = 42/365 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  IVVS+A + ++          I +V   R+   L+      +G      +AV GT G
Sbjct: 77  AHVIVVSTAINEENPEIKWAKEHRIPIV---RRAEMLAELMRYRHG------IAVAGTHG 127

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I             T    +F    +LT          L           
Sbjct: 128 KTTTTSLMSSILTA----------TGDAPTFVIGGKLT---SAGTNAQLGSSKYLVAEAD 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             +AS   L               TN+  DH+D +Q            F   LP    A+
Sbjct: 175 ESDASFLHLQ--------PQTVIVTNIDEDHMDTYQGDFEQVKRTFIEFIHNLPFYGLAV 226

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLF 304
           +  DD   + +M                    +   +       +    +   +      
Sbjct: 227 LCIDDENVRSIMPELSRPVLTYGIEEQADF--YATDIKQSGRYCEFMAHLPEGEPIRIRL 284

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYV 360
           P+PG+  V NAL    +   +G+   ++   L     V  RF+ +      +        
Sbjct: 285 PMPGKHNVLNALATIAVATDLGVAPNVIQAGLMGFEGVGRRFQELEPLVLSDGGKAMFVD 344

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD 418
           DY H  + +   +  IR     + +V+        R +       ++     D+ I+ D 
Sbjct: 345 DYGHHPSEVLATINAIRDGWPEKRLVMVYQPHRYTRTRDLYEDFVRVLSK-VDVLILLDV 403

Query: 419 NPRSE 423
               E
Sbjct: 404 YSAGE 408


>gi|120597222|ref|YP_961796.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|146291595|ref|YP_001182019.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
 gi|166224730|sp|A4Y2N7|MURC_SHEPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224732|sp|A1REZ7|MURC_SHESW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120557315|gb|ABM23242.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|145563285|gb|ABP74220.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
          Length = 488

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 144/411 (35%), Gaps = 48/411 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           S+A + ++          I +V   R+   L+      +G      +A+ GT GK++  S
Sbjct: 86  STAINAENPEIIAAKELRIPIV---RRAEMLAELMRYRHG------VAIAGTHGKTTTTS 136

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +  ++G     +     ++S   + RL T   +    A +  S     H+    S 
Sbjct: 137 LIASVYGQAGRDPTFV-IGGLLNSAGTNARLGTSRYL---IAEADESDASFLHLQPMVS- 191

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                             TN+  DH+D +        +    F   LP    A++  DD 
Sbjct: 192 ----------------VVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDP 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEF 310
             +E+M R                           ++ + T+  +GK+  D L  LPG+ 
Sbjct: 236 VVREIMPRIGRHLVTYGFSDDADV--QALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQH 293

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSN 367
            V NAL A  +     ID + +++ L +   +  RF+ +G  +       +  DY H  +
Sbjct: 294 NVLNALAAIAVATEDEIDDSALIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPS 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +   +K  R     + +V+        R +       ++     D  ++ D     E P
Sbjct: 354 EVAATIKAARAGWPEKRLVMAYQPHRYTRTRDLYEDFIEVLSQ-VDCLLLLDVYSAGEAP 412

Query: 426 ------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                   +   I + G    I   +  +      ++L + D+L+  G G+
Sbjct: 413 ITGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLLTQGAGN 463


>gi|332686272|ref|YP_004456046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
 gi|332370281|dbj|BAK21237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
          Length = 455

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 102/278 (36%), Gaps = 21/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +          TN+   H+DYH+T++ Y +AK ++ + +  ++   I 
Sbjct: 167 MELSSFQLL--GVSSFYPTMAVITNIYEAHLDYHKTRENYVSAKWQIQQNMEQEDQLIIN 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      +E++K          +         L +     ++  +++            +
Sbjct: 225 WNQ-PELREMVKTTRATVVPFSTYEVVNGAYLLNETLYFKDEIIMSVD--------ELGV 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     I +  + E L +   V  R +++ T  +        A   
Sbjct: 276 PGNHNIENALAAICVAKLYNIANESIRETLHRFSGVAHRTQYIDTIKQRKFYNDSKATN- 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    S ++I +   G DR      ++  +  DL  I +  +     E   
Sbjct: 335 --ILATKMALSGFPSNQLI-LLAGGLDRGNDFDELIP-VLKDLKGIVLFGE---TKEKLR 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           KI      G+       N  +A+R A E+  K D +++
Sbjct: 388 KIAKN--AGVLIIKTAANMTDAVREAFEISQKNDTILL 423


>gi|302671221|ref|YP_003831181.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Butyrivibrio
           proteoclasticus B316]
 gi|302395694|gb|ADL34599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Butyrivibrio
           proteoclasticus B316]
          Length = 457

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 99/299 (33%), Gaps = 20/299 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I ++ A S L          E SS  L+   +D       +  N+  DH++ H T + Y 
Sbjct: 148 IGVSYAESALEMDESCVTVGEISSFQLEA--VDNFHANVSAILNITPDHLNRHHTMECYA 205

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K  +      +++  + Y D+ Y+++   R         S        +L        
Sbjct: 206 QMKENITHNQTKEDTCVLNY-DNEYTRDFGARCPAKVVFFSSKEKLEDGFYLDGEDIYMA 264

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                + +          L G   V N + A  + +A+ +  A +L  +     V  R E
Sbjct: 265 TAGNAMKIMN---IHDMNLVGTCNVENVMAAIAMSLAMDVPLATILSVIRNFKAVEHRIE 321

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV T               ++    +K        +  ++ G G D+       +     
Sbjct: 322 FVATKRGVDYYNDSKGTNPDAAIQGVKA-----MCKPTILIGGGYDKGNDYDEWIESFGD 376

Query: 408 DLADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++       +  +KI    +  HG   ++ K    EA+    E   K D +++
Sbjct: 377 TIKLLVLI------GQTRQKIAECCD-KHGFSNYVFKDTYEEALEFCTESAQKGDAVLL 428


>gi|13541588|ref|NP_111276.1| folylpolyglutamate synthase [Thermoplasma volcanium GSS1]
          Length = 428

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 100/310 (32%), Gaps = 19/310 (6%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           NR  T   +    A  Y   + V + SVE    G    RLD   +I    + + +   ++
Sbjct: 110 NRNPTFFEVTTMMAFQYFKDRKVDYASVEVGLGG----RLDATNIIMPEVSVIAQVGYEH 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                    +       ++ +  P ++  D      V+           S         +
Sbjct: 166 ADKLGCSLTSIAYEKAGIIKEGRPIVLQDDKPE---VVNEVRRIAQVKHSPLITLDRNKI 222

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEK 338
           K +    N            +     L G++Q  NA  A   +  +        +E    
Sbjct: 223 KNLHVDENGTDFDFDGTNDTYHIHTSLIGDYQALNAATAILAVENSKVQVYKKDIETGIS 282

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             + PGR E      R   + +D AH   +   +++ ++ + +    +V G   D+D   
Sbjct: 283 RTIWPGRLEI---IDRSPLVIIDAAHNPPAANKMVRTVKKVFNREPTIVAGILSDKDA-- 337

Query: 399 RPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                 +   L+   I T   +  R+ DP  + A+  +         + I A   A ++ 
Sbjct: 338 -YSFFSVLRQLSGKIIFTTPEEKERAVDPNILMAQYGNLFRSARVIPDPISAFEHAKKV- 395

Query: 457 NKQDVLVVAG 466
              D + V G
Sbjct: 396 --DDFVFVTG 403


>gi|331086157|ref|ZP_08335239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406316|gb|EGG85830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 450

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 101/298 (33%), Gaps = 19/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + L  +  +    E SS  L+   +D       +  N+  DH++ H T + Y 
Sbjct: 144 IGTPYTGASLEMKEDSVTVAEMSSFQLET--IDTFHPKVSAILNITPDHLNRHHTMEEYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  + +    ++   + Y +D   +   ++ H       S     + I+L+    I+ 
Sbjct: 202 QAKEEITKNQTEEDVCVLNY-EDEVLRAFGEKLHTQVLYFSSRRKLERGIYLEDGKIIYA 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +  + ++      L G     N + A+ +  A G+  + + E +     V  R E
Sbjct: 261 DGKPEVLCKVEEL----KLLGTHNYENVMAASAMAAAYGVPLSSIRETIRNFGGVAHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV                 ++    ++        R  ++ G G D++      +     
Sbjct: 317 FVTEKEGVAYYNDSKGTNPDAAIKAVEA-----MNRPTILIGGGYDKNSSYDEWIDSFGE 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + +V          EKI       G    I      EA+  +  +  + D +++
Sbjct: 372 KVRYLVLV------GATKEKIAETARRKGFDNVILADTFEEAVMESARLAREGDAVLL 423


>gi|329297059|ref|ZP_08254395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Plautia stali symbiont]
          Length = 451

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 98/360 (27%), Gaps = 38/360 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              +LAV GT GK++ A    +I +  G    F IG        +     +    I   +
Sbjct: 102 DRWVLAVAGTHGKTTTAGMAARILEACGLEPGFIIGGLPGNFDVSAKLGKSPFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D     +A       
Sbjct: 162 YDCAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDLRAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+    GC                       +   
Sbjct: 202 KQFHHLVRIVPGQGKILLPEHDHNIKQVMAMGCWSEQESVGDNGRWQANKLVPDASRWEA 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                K  +  + L GE  ++N L+A      +G+      E L        R E  G  
Sbjct: 262 WLDGEKVAEVNWALVGEHNMHNGLMAIAAARHVGVKPCDAGEALNSFINGRRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL- 409
               ++Y D+AH   ++   L  +R+   G  RI+ V        +     MG    +L 
Sbjct: 321 VNAIKVYDDFAHHPTAILATLAALRSKVGGTARILAVLEP-----RSNTMKMGVSKSELA 375

Query: 410 -----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                AD   +   +     P ++       I       +    +    +     D ++V
Sbjct: 376 PSLGRADEVFLFQPHH---IPWQVADVAEACIQPAHWSADIDTLVEMVAKAAQPGDSILV 432


>gi|238753783|ref|ZP_04615144.1| Folylpolyglutamate synthase [Yersinia ruckeri ATCC 29473]
 gi|238708019|gb|EEQ00376.1| Folylpolyglutamate synthase [Yersinia ruckeri ATCC 29473]
          Length = 423

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 52/185 (28%), Gaps = 12/185 (6%)

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
               +   S   +             V     A  L +       +    +         
Sbjct: 227 WQFSRQDSSWRWQCGAQQMDDLPLPHVPLPNAATALAVLHYSPLQVSDSAIRLGLENAQL 286

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKRP--I 401
                  S    + +D AH  ++   + + +  +    G++  V G   D+D       +
Sbjct: 287 PGRFQMVSEQPMLILDVAHNPHAAAYLAERLSQLPAVRGKVRAVVGMLADKDIAGTLACL 346

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +G+I            + PR          +   +    +  +   A R A++    QD 
Sbjct: 347 VGQIDEWYCAPL----EGPRG----ASAEALAQHLTASRQFNDVETAWRQAMQDAAPQDR 398

Query: 462 LVVAG 466
           ++V G
Sbjct: 399 VIVCG 403


>gi|37528368|ref|NP_931713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36787806|emb|CAE16921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 456

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 111/377 (29%), Gaps = 51/377 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ A  +  I +  G    F IG        +     +    I   
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYKPGFLIGGVPGNFETSAQIGESPFFVIEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D          A +
Sbjct: 161 EYDSAFFDKRSKFV---------------HYSPRTLIMNNLEFDHGDIFGDL-----AAI 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     L +  P         +   +K+  + GC               K  +  ++   
Sbjct: 201 QRQFHHLVRIVPGSGKICVPDNDVNLKQVLSMGCWSELELVGETGNWQAKKISTDSRHYQ 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                    +    L GE  + N L+A      +G+  A     L +      R E  G 
Sbjct: 261 VFYGGKVVGEVNGSLVGEHNMRNGLIAIAAAHHVGVQPADACCALSEFINARRRLELRG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG----KI 405
              G  +Y D+AH   ++   L+ +R+   G  RII V        +     MG    +I
Sbjct: 320 EENGVTVYDDFAHHPTAILATLEALRSKVGGTARIITVLEP-----RSNTMKMGVSKNEI 374

Query: 406 ALDL--ADIAIVTDDNPRSEDPEKI---RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQ 459
           A  L  AD   +         P  I    +EI            +    +   ++   + 
Sbjct: 375 APALGRADEVFLFQ-------PANIKWHVSEIADHCVQPAYWSADIDSLVHMIVDKAQQG 427

Query: 460 DVLVVAGKG-----HET 471
           D ++V   G     HE 
Sbjct: 428 DHILVMSNGGFGDIHEK 444


>gi|89099607|ref|ZP_01172482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
 gi|89085760|gb|EAR64886.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
          Length = 450

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 95/283 (33%), Gaps = 23/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +E SS  L    ++  +      TNL   H+DYH T+  YF AK  + +    ++ 
Sbjct: 162 HTIVIELSSFQL--MGIEAFRPKIAILTNLYDAHLDYHGTRHDYFEAKANITKNQTEEDY 219

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I  AD     ++ + +                  + +  A      +  + E      
Sbjct: 220 FII-NADQEAVIQLAEESRARIVPFSVS-------RVLEAGACVKDGWICFNGEPVMKRE 271

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPG   + N L +       G+D+  + + +     V  R +++G            
Sbjct: 272 DASLPGNHNLENILSSIAAAKLSGVDNKAIFKVMSSFAGVKHRLQYIGEVDGRKFYNDSK 331

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  +           +++   G DR  G   ++  +A       ++T      
Sbjct: 332 ATNILATKNAIAAFDV-----PVILLAGGLDRGNGFEELIPSLANV---ETLIT----FG 379

Query: 423 EDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   KI     + GI   +   N   A+  A  +    DV+++
Sbjct: 380 QTAGKIEEAGKLAGIKSIMRVDNVASAVPAAHRLSKPGDVILL 422


>gi|319943966|ref|ZP_08018246.1| folylpolyglutamate synthase/dihydrofolate synthase [Lautropia
           mirabilis ATCC 51599]
 gi|319742727|gb|EFV95134.1| folylpolyglutamate synthase/dihydrofolate synthase [Lautropia
           mirabilis ATCC 51599]
          Length = 443

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 121/404 (29%), Gaps = 48/404 (11%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF-- 156
            + +     RL  + P     V GT+GK S  + +  I + +G           +     
Sbjct: 29  LERVGEVYRRLGIQLPGVKFVVAGTNGKGSTCAMLDAILRAAGYRVGLHTSPHLLRFNER 88

Query: 157 --------AQDNRLTTPSPIYLAKALSYLSSQGVT--HVSVEASSHGLDQHRLDGIKLIA 206
                   + +  L     + LA+    LS    T   + +  S   LD   ++      
Sbjct: 89  IRIDGEELSDEALLPLFEQVELARGDVSLSYFEFTTLVMFLAFSREPLDAVVMEIGLGGR 148

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               NL         +  A  +A+    +        A I+  D  +     +   +  R
Sbjct: 149 LDAVNLVDADCAIVTSV-AIDHAQWLGNDRETIALEKAHIFRPDRPAICSDPQPPQSLVR 207

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFLFPLPGEFQVYNALVAAGL 321
                    ++  +      ++QQ   +  G       +  L  +         L A   
Sbjct: 208 HAEEIGADLWLLGRDYNYAGDRQQWAWTGRGTRRSGLAYPALRGMNQLLNASGVLAALQA 267

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                  SA  +     L  +PGRF+ +        I +D  H  ++   ++ N+  +  
Sbjct: 268 VRGQLPVSAQDIRRGLSLVEMPGRFQVLPGQPT---IILDVGHNPHAAGHLVANLGNMAY 324

Query: 382 GR-IIVVFGCGGDRDQGKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEI-IHGI 436
                 VFG   D+D       G IA   +  D  I  D   PR      +   + + GI
Sbjct: 325 HPATYAVFGMLSDKDID-----GVIAHLANHVDHWICCDLPGPRGTTARMLADHLHMAGI 379

Query: 437 PGFIEKGNRIEAI--------------RTAIEMLNKQDVLVVAG 466
              +   +R + I              R A       D ++V G
Sbjct: 380 DDLV---DRRKGIDRSVVCSTTPDEGLRLARRQAGPDDRIIVFG 420


>gi|312143939|ref|YP_003995385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904590|gb|ADQ15031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 454

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 16/278 (5%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +         + N   DH+D H++++ Y NAK ++F +   +   A+I
Sbjct: 164 LELSSFQLEA--VKNFHPKIALYLNYSPDHLDRHKSEENYKNAKKKIFSQ-QNRSDYALI 220

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y  E+  +       + +   +     + +      ++      +          
Sbjct: 221 DLDDKYLAEIKNQIKAELFTISAFNKKADV--IIENNKAILQKNGEDKKQELIDFDKLNF 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                  N   AA      G     +    +K  +   R E +  +     I    A   
Sbjct: 279 SALHNKKNITFAALAAYLSGQKLEKIKHAAQKYELKSHRMEKIDNDRGYLIIDDSKATNP 338

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           ++    +K++      R I++   G DR      +  +I   ++ + ++       E  +
Sbjct: 339 SAALNAVKSLD-----RDIILIAGGQDRGADFSQLAEEIKKRVSTLILI------GETSD 387

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+ A +        +  N  +A   A E L++ + L++
Sbjct: 388 KLAAAVGESNLEIFKAENMEKAAEIAAEKLSENNCLLL 425


>gi|317124649|ref|YP_004098761.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
 gi|315588737|gb|ADU48034.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
          Length = 488

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 100/274 (36%), Gaps = 16/274 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D++ +      A   L   + P        ADDA S+ + +RA   G RV
Sbjct: 200 IVTNVQPDHLDFYGSFAVVQAAYEALVATIQPGGLLVT-CADDAGSRALAERATARGTRV 258

Query: 268 LSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAI 325
           L+ G+     + L            T+  EG        +PG     NA+ A       +
Sbjct: 259 LTYGFRPDADVALGDYRQDGLTSGATVLDEGVRRLLTLGIPGRHNALNAVAAYTAAVHGL 318

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGR 383
           G     VL  L        RFE  G  + G  +  DYAH +  +  +++    +    GR
Sbjct: 319 GQQPDRVLAGLASFTGTRRRFEPKG-EAAGVVVVDDYAHNAGKVAAVVETASQLVVRPGR 377

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHG- 435
           +IVVF      R +     +G+     AD+ IV D     EDP      E +   +    
Sbjct: 378 LIVVFQPHLYSRTRDFAVELGRGLAP-ADVVIVMDVYAAREDPVPGVSGELVADAVRRTG 436

Query: 436 -IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    +  E      ++    D+++  G G
Sbjct: 437 RGSDVHYVPSWSEVPSVVAQVARAGDLVLTVGAG 470


>gi|295399556|ref|ZP_06809538.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294979022|gb|EFG54618.1| UDP-N-acetylmuramate/alanine ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 434

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 107/351 (30%), Gaps = 49/351 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++  A      P++      +FL  F  +         +AV G+ GK+S
Sbjct: 64  VIAGNAFPDTHEEIQAAYELGVPVIR---YHRFLGEFLQKFTS------IAVAGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG               T   I  +K   + + +   H    
Sbjct: 115 TTGLLAHVMQGAHSTSYLIG-------------DGTGKGIEGSKYFVFEACEYRRHFLSY 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
              + +               TN+  DH DY       F+A     E  L  +   I   
Sbjct: 162 FPDYAI--------------MTNIDFDHPDYFANIDDVFSAFQ---EMALQVKKGIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y +++  +           G    F     V                   F  P  G
Sbjct: 205 DDEYLQKIKAKV---PVLFYGFGDDNDFQARNVVKTTEGTSFDVFVRNTFFASFEIPRFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC    ID  ++ E L+    V  RF           +  DYAH    
Sbjct: 262 DHNVLNALAVIALCHYEEIDVHIIQERLKTFQGVKRRF--SEKVLGNQILIDDYAHHPRE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD 417
           +   +   R    GR IV         R Q       +     AD   + D
Sbjct: 320 IIATIDAARQKYPGREIVAIFQPHTYTRTQAFLREFAESLQQ-ADQVYLCD 369


>gi|325108984|ref|YP_004270052.1| FolC bifunctional protein [Planctomyces brasiliensis DSM 5305]
 gi|324969252|gb|ADY60030.1| FolC bifunctional protein [Planctomyces brasiliensis DSM 5305]
          Length = 454

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 70/439 (15%), Positives = 135/439 (30%), Gaps = 56/439 (12%)

Query: 68  AEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A A +     Y + +       +     +D  R+ L+             ++ V GT GK
Sbjct: 8   ATAALYGRINYEVVNTDKMSPID---FKLDRMRRLLAEL---DDPHLKIPVVHVAGTKGK 61

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----------------------- 163
            +  + V +  +  G                +                            
Sbjct: 62  GTACALVAEFLKAGGYKVGLYTSPHMYRFEERFVVNGKQPSEADVVALTQTVLDAADRLQ 121

Query: 164 ---TPSPIYLAKALSYLSSQGVTH--VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                      + ++ ++     +  V +     GL   RLD   L     T +     D
Sbjct: 122 AEDASLAPTFFECINAMAWMHFCNQNVDLAVLEVGLG-GRLDSTNLCKPLVTAITSISFD 180

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM-KRAHNAGCRVLSVGYQGKFI 277
           + +   +   A       ++    P I    +  ++ V+  +A  A   +  +       
Sbjct: 181 HTRILGSTLAAIAGEKAGIIKPGVPVICGVLNPEAQAVVHAKAEEAKAPLKQLERDVLVQ 240

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA----IGIDSALVL 333
                   H +QQV+++ +G+ +    P PG     NA +A                  +
Sbjct: 241 TDAAWSLAHREQQVSLNCDGETWKLRLPFPGSVYADNAAIAVACVHELASRGFPVPNSTI 300

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGG 392
               +  V+P RFE +  +     +  D AH + S+  ++K +R     + + V      
Sbjct: 301 AAAARDIVLPLRFEILDESPV---LIADSAHNAASIRALIKAVREHLPSQPVTVMLAVSS 357

Query: 393 DRDQGKRPIMGKIALDL--ADIAIVT--DDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIE 447
           D+D         I  +L   +  IVT      R+  PE++         G  +   N   
Sbjct: 358 DKDH------AAICRELKGVERVIVTRYVGTARAVAPEQLAETAREHFGGQVLLAENPAA 411

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A+  A  M+   DVL+  G
Sbjct: 412 ALEMARSMVGNGDVLLATG 430


>gi|269137996|ref|YP_003294696.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
 gi|267983656|gb|ACY83485.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
          Length = 491

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 129/423 (30%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A +  +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 83  ASVVVVSTAIAADNPEIIAAREARIPVI-----RRAEMLAELMRFRHG------IAIAGT 131

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 132 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +             F   LP    
Sbjct: 189 ------------------LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   + C            +       
Sbjct: 231 AVLCIDDPVIRELLPRVGRQVTTYGFSQDADVRIEEYRQCG-AQGTFFLCRQDRPRLAVT 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  AA +    GID   +L  L        RF        + V      
Sbjct: 290 LNAPGRHNALNAAAAAAVASEEGIDDEAILRALGGFQGTGRRFDFLGEFSLQHVNNKPGK 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     R +V+        R +        +     D+ 
Sbjct: 350 VMLVDDYGHHPTEVDATIKAARAGWPDRRLVMVFQPHRFTRTRDLYDDFANVLSQ-VDVL 408

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D  P  E P        +   I   G    +         +T  + L + D+++  G
Sbjct: 409 LMLDVYPAGEHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFLQEGDLILTQG 468

Query: 467 KGH 469
            G+
Sbjct: 469 AGN 471


>gi|281421051|ref|ZP_06252050.1| UDP-N-acetylmuramate--alanine ligase [Prevotella copri DSM 18205]
 gi|281404969|gb|EFB35649.1| UDP-N-acetylmuramate--alanine ligase [Prevotella copri DSM 18205]
          Length = 458

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 111/364 (30%), Gaps = 43/364 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              L V GT GK+S ++    I  +S +         + +             + +    
Sbjct: 112 HKGLCVAGTHGKTSTSTMCAHIMHQSHIDCNAFLGGISKNYGTNYILSDKSDYVVIEADE 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S                       ++      T    DH+D + T++AY  +     
Sbjct: 172 FDRSFHW--------------------LRPWMSVITATDPDHLDIYGTKEAYLESFRHYT 211

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           E + P  +  I    +      MK+    G ++          H + +   +        
Sbjct: 212 ELIQPGGALIIHKGLE------MKQHVQDGVKIYEYSQDEGDFHAENIKIENGGITFDFI 265

Query: 295 VEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
              ++        P    + N + A  +    G  +  +   ++    V  RF+F    +
Sbjct: 266 SPIENVTGVELGQPVPINITNGVAAMAMAQLNGCTADELRNGMKTYGGVDRRFDF-KIKN 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--D 411
                  DYAH    +    K+IR +   R I          +  R      A  L+  D
Sbjct: 325 NKLVFLSDYAHHPKEIYQSAKSIRELYKDRKITAIFQPHLYTRT-RDFYKDFANSLSLLD 383

Query: 412 IAIVTDDNPRSEDP------EKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I+ D  P  E P      + I   +  G+    I K + ++ ++         DVLV+
Sbjct: 384 EVILCDIYPAREQPIPGVTSKLIYDNLKPGVEKSMIHKEDVLDLVKN-----RDFDVLVI 438

Query: 465 AGKG 468
            G G
Sbjct: 439 LGAG 442


>gi|270265035|ref|ZP_06193298.1| hypothetical protein SOD_k00710 [Serratia odorifera 4Rx13]
 gi|270040969|gb|EFA14070.1| hypothetical protein SOD_k00710 [Serratia odorifera 4Rx13]
          Length = 459

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 100/359 (27%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYQPGFV-IGGVPGNFDVSARLGGSPFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +        V  S   L  +             NL  DH D     +A        
Sbjct: 161 EYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +                  
Sbjct: 203 QFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQELVGEEGAWRAHKLTPDASHYEVF 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKAGEVKWALVGEHNMHNGLMAIAAARHVGVQPADACAVLGDFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC------GGDRDQGKRPIMGKI 405
            G  +Y D+AH   ++   L  +R    G  RI+ V          G       P +G+ 
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGISKNDLAPSLGR- 380

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +   +     P ++       +       +    +   +      D ++V
Sbjct: 381 ----ADEVFLFQPHH---IPWQVAEVAEACVQPAHWSADLGTLVDMIVRTAQPGDHILV 432


>gi|254446684|ref|ZP_05060159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
 gi|198256109|gb|EDY80418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
          Length = 429

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/396 (12%), Positives = 115/396 (29%), Gaps = 63/396 (15%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           + +V S  +S          +    VV           + L+      I+ +TGT+GK++
Sbjct: 67  KLVVCSPGFSADHPWLVAARSVGCEVVPEL-----DLGASLWRGP---IVVITGTNGKTT 118

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +  F+      +G+ ++  G      S                                E
Sbjct: 119 LTEFITSAFSSAGIEAYACGNIGRPISSLV-----------------ADDCNLEAIAVCE 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS   +      +   +  +TN   DH+D H++ ++Y        +  L +     ++ 
Sbjct: 162 VSSFQAEI--TKRLHADSLLWTNFDEDHLDRHKSLESY-----FKCKYTLTQLQRGDVFL 214

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D   KE  +R       +   G     +   ++       +                  
Sbjct: 215 FDESVKEFGERF---NYAIPDEGLIDSSLDALELGVAGTVFETLPERN------------ 259

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                  L+A  L + +G+D   ++E        P R E +             +   + 
Sbjct: 260 -----TYLIARALWLRMGLDEGELIEAANNFKKSPHRMELIVNQDGISYWDDSKSTNFH- 313

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
              +   ++       +V  G G ++       + ++A  ++        +   E   ++
Sbjct: 314 --AVYGALKRFE--NPVVWIGGGKNKGGDLPRFVARVASSIS------SAHLIGETSAEL 363

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            A             +  EA+  A  M      +++
Sbjct: 364 AAAFEEHGVPVRVYEDLEEAVAGANAMAESGSNILL 399


>gi|197287210|ref|YP_002153082.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Proteus mirabilis HI4320]
 gi|227357096|ref|ZP_03841466.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Proteus mirabilis ATCC 29906]
 gi|194684697|emb|CAR46660.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Proteus mirabilis
           HI4320]
 gi|227162788|gb|EEI47751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Proteus mirabilis ATCC 29906]
          Length = 459

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 109/376 (28%), Gaps = 49/376 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ A  +  I +  G    F IG        +     +    I   
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEDCGYQPGFLIGGVPGNFQVSAQLGESPFFVIEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D            +
Sbjct: 161 EYDSAFFDKRSKFV---------------HYSPRTLILNNLEFDHADIFDDL-----TAI 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     L +  P         +   +K+    GC               K  +  +    
Sbjct: 201 QKQFHHLVRIVPGSGKIIMPDNDLNLKQTIGMGCWSEEEYTGETGDWQAKKISNDSSHFA 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 +  +  + L GE  + N L+A      +G+        L K      R E  G 
Sbjct: 261 VFHKGEQVGEVCWGLSGEHNMQNGLMAIVAAHHVGVLPVDACAALNKFINARRRLELRGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------ 403
            ++   +Y D+AH   ++   L+ +R+   G  RII V        +     MG      
Sbjct: 321 VNQ-VSVYDDFAHHPTAILATLEALRSKVGGTARIIAVLEP-----RSNTMKMGISKDDI 374

Query: 404 KIALDLADIAIVTDDNPRSEDP--EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQD 460
             AL  AD   +       + P  + + ++I    +       +    +    +     D
Sbjct: 375 APALGRADEVFL------FQPPNIQWLVSDIAEKCVQPARWSTDIDTLVEMVAKEAKPGD 428

Query: 461 VLVVAGKG-----HET 471
            +++   G     HE 
Sbjct: 429 HILIMSNGGFGGIHEK 444


>gi|153854695|ref|ZP_01995945.1| hypothetical protein DORLON_01943 [Dorea longicatena DSM 13814]
 gi|149752799|gb|EDM62730.1| hypothetical protein DORLON_01943 [Dorea longicatena DSM 13814]
          Length = 451

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 104/298 (34%), Gaps = 18/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      +       T    E SS  L+   +   +    +  N   DH++ H T +AY 
Sbjct: 144 IGTPYTTAVEKMTDNTITVAEMSSFQLES--IVDFRPRVSAILNFTPDHLNRHHTMEAYV 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           NAK  + +     +   + Y +D  ++E  +          S     + I+L++   I+N
Sbjct: 202 NAKKNIAKNQTEDDYCILNY-EDRLTREFGEEIKANVLYFSSQRKLEEGIYLEEGNIIYN 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              V  ++   D      + G     N + A  +    G+   ++ E ++    V  R E
Sbjct: 261 YGGVKETICHVD---ELQILGTHNHENVMAACAMAAVYGVPVDVIRESVKAFKGVEHRIE 317

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +V                 ++    ++ ++     R  V+ G G D+       +     
Sbjct: 318 YVTEKKGVTYYNDSKGTNPDAAIKGIQAMK-----RPTVLIGGGYDKGSEYTEWINSFDG 372

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 I+  D       EKI A+    G   ++   +  EA+ TA ++    + +++
Sbjct: 373 K-VKKLILLGDTK-----EKIAADAEKCGFKDYMFVDSFEEAVLTAAKIAESGEAVLL 424


>gi|313901115|ref|ZP_07834603.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium sp. HGF2]
 gi|312954073|gb|EFR35753.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium sp. HGF2]
          Length = 434

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 93/269 (34%), Gaps = 17/269 (6%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q      K      TN+  DH+DY++  + Y +A      ++       +++ DDA  + 
Sbjct: 155 QRHFLAYKPEYAIITNIELDHVDYYKDMEDYCDAFEAFANQIQKG---VVLFGDDAAVRS 211

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +  +       +        +         Q   +  +     F  P  G+  ++N+
Sbjct: 212 LHVKTEHL---YYGLKDHNDVQAVHVKQHEDGMQFDVLYRKKLFAHFDLPFVGKPLLWNS 268

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    + I  G+   L+ E L+    V  RF      +       DYAH   +++ +++ 
Sbjct: 269 LGVIAIGIMEGLSGELLQEGLQSFPGVKRRFTIE--ENGDNVYIDDYAHHPTAVKYMIEA 326

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVT--DDNPRSEDPEKI-RA 430
            R    G+ ++      DR       M + A +L  AD   +    +N   ED   I  +
Sbjct: 327 ARIKYPGKKVIAL-FKPDRYSRIYYFMDRFAEELNQADEVYLCHFPENAAREDGIDITIS 385

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           ++              EA   A  +  + 
Sbjct: 386 DLADKCEKATVINEDEEA---ARMLAQRG 411


>gi|304558043|gb|ADM40707.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda FL6-60]
          Length = 487

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 129/423 (30%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A +  +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSTAIAADNPEIIAAREARIPVI-----RRAEMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +             F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   + C            +       
Sbjct: 227 AVLCIDDPVIRELLPRVGRQVTTYGFSQDADVRIEEYRQCG-AQGTFFLCRQDRPRLAVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  AA +    GID   +L  L        RF        + V      
Sbjct: 286 LNAPGRHNALNAAAAAAVASEEGIDDEAILRALGGFQGTGRRFDFLGEFSLQHVNNKPGK 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     R +V+        R +        +     D+ 
Sbjct: 346 VMLVDDYGHHPTEVDATIKAARAGWPDRRLVMVFQPHRFTRTRDLYDDFANVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D  P  E P        +   I   G    +         +T  + L + D+++  G
Sbjct: 405 LMLDVYPAGEHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFLQEGDLILTQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|189242004|ref|XP_001807057.1| PREDICTED: hypothetical protein, partial [Tribolium castaneum]
          Length = 765

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/269 (4%), Positives = 48/269 (17%), Gaps = 8/269 (2%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           ++            ++    ++   +            Y  K   + +      V+ +  
Sbjct: 262 NWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFW 321

Query: 191 SHGLDQHRL----DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           S    +            +  +          +  +   +   +                
Sbjct: 322 SFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGF 381

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                ++            +      +  +  +       +  +        D+++ +  
Sbjct: 382 NTGYNWNWVNFNFWSFNFRKWYWFYSRYNWYWVNFNLWRFDFWKRYWFNSWYDWNWYWHW 441

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP---GRFEFVGTNSRGGRIYVDYA 363
                 YN         +               + V     RF+F            ++ 
Sbjct: 442 NRFNSGYNWYRINFNFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWY 501

Query: 364 HTSNSLEMILKN-IRTITSGRIIVVFGCG 391
              +              +          
Sbjct: 502 RNWDRFHSRYNWKWYGFNTRYNWNWVNFD 530



 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/263 (3%), Positives = 43/263 (16%), Gaps = 8/263 (3%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP------IYLAKALSYLSSQGVTH 184
           ++            ++    ++   +         +       I               +
Sbjct: 410 NWYWVNFNLWRFDFWKRYWFNSWYDWNWYWHWNRFNSGYNWYRINFNFWSFNFRKWYWFY 469

Query: 185 VSVEASSHGLDQHRLDGI-KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                    L+  R D   +    S+ +            +  +              + 
Sbjct: 470 SGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNF 529

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                +           +     +    +     +        N  +       +     
Sbjct: 530 DFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKW 589

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
           +     +                        +   ++    RF+F            ++ 
Sbjct: 590 YGFNTRYNWNWVNFDFWSFNFRKWYWFYSGYNWYWVNFNLWRFDFWKWYGFNSWYDWNWY 649

Query: 364 HTSNSLEMILKN-IRTITSGRII 385
              +              +G   
Sbjct: 650 RHWDRFHSRYNWKWYRFNTGHNW 672



 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/269 (4%), Positives = 42/269 (15%), Gaps = 8/269 (2%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           ++            ++    ++   +            Y  K   + +      V+    
Sbjct: 336 NWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTGYNWNWVNFNFW 395

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S    +      +               + +     +      +              + 
Sbjct: 396 SFNFRKWYWFYSRYNWYWVNFNLWRFDFWKRYWFNSWYDWNWYWHWNRFNSGYNWYRINF 455

Query: 251 AYSKEVMKRAHNA--GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            +     ++ +    G     V          K    ++            F   +    
Sbjct: 456 NFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKW 515

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP-----GRFEFVGTNSRGGRIYVDYA 363
                              +           +         RF+F            ++ 
Sbjct: 516 YGFNTRYNWNWVNFDFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWY 575

Query: 364 HTSNSLEMILKN-IRTITSGRIIVVFGCG 391
              +              +          
Sbjct: 576 RNWDRFHSRYNWKWYGFNTRYNWNWVNFD 604



 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/263 (4%), Positives = 50/263 (19%), Gaps = 11/263 (4%)

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           ++            ++    ++   +            Y  K   + +      V+    
Sbjct: 140 NWYWVNLNLWRFDFWKGYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTGYNWNWVNFNFW 199

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S    +      +     + N            +  F  +                ++ +
Sbjct: 200 SFNFRKWYWFYSRYNW-YWVNFNL--------WRFDFWKRYWFNSWYDWNWINFNFWSFN 250

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                     +N     L++     +                       +++ +      
Sbjct: 251 FRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTR 310

Query: 311 QVYNAL-VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             +N +                   +   +++   RF+F            ++    +  
Sbjct: 311 YNWNWVNFDFWSFNFRKWYWFYSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRF 370

Query: 370 EMILKN-IRTITSGRIIVVFGCG 391
                       +G         
Sbjct: 371 HSRYNWKWYGFNTGYNWNWVNFN 393



 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/253 (6%), Positives = 42/253 (16%), Gaps = 16/253 (6%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +          S +        + +  +            K   + S      V+     
Sbjct: 165 WNWYRNWDRFHSRYNWKWYGFNTGYNWNWVNFNFWSFNFRKWYWFYSRYNWYWVNFNLWR 224

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                 R         ++ N              +++   R +       +   +  +  
Sbjct: 225 FD-FWKRYWFNSWYDWNWINF------------NFWSFNFRKWYWFYSGYNWYWVNLNLW 271

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 +   N+           +F             +   +    DF         + 
Sbjct: 272 RFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTRYNWNWVNFDFWSFNFRKWYWF 331

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNS 368
                           D                R      +    + Y     Y     +
Sbjct: 332 YSGYNWYWVNLNLWRFDFWKRYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNTGYNWNWVN 391

Query: 369 LEMILKNIRTITS 381
                 N R    
Sbjct: 392 FNFWSFNFRKWYW 404



 Score = 40.3 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 6/190 (3%), Positives = 34/190 (17%), Gaps = 2/190 (1%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                S+ N       +  +       +    ++          +    +     +    
Sbjct: 9   WYRFDSWHNWYWFDFHFW-SFNFRKWYRFDSGDDWYRINFDFGSFNFWKWDGFDSRYNWY 67

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                 +  +   +++ ++        +             +     +            
Sbjct: 68  WINFNWNWYWFNSWLNWQRKRFYSWFDRSWKRFYTGYNWKWYWFYARYNWNGVNFDFWSF 127

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITS 381
                       +   +++   RF+F            ++    +              +
Sbjct: 128 NFRKWYWFYSGYNWYWVNLNLWRFDFWKGYWFNSWYDWNWYRNWDRFHSRYNWKWYGFNT 187

Query: 382 GRIIVVFGCG 391
           G         
Sbjct: 188 GYNWNWVNFN 197


>gi|99035085|ref|ZP_01314874.1| hypothetical protein Wendoof_01000291 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 507

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 139/411 (33%), Gaps = 27/411 (6%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V SSA    +    A   +N  +L   +    L+           + ++AV+G+SG
Sbjct: 95  AQIVVHSSAIESDNVELIAAKNNNKTVLHRSDI---LAEIMK------GKYVIAVSGSSG 145

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I   SG+ +        ++S+  + +L       +    S  +   +   
Sbjct: 146 KTTTTAMIASIFDHSGIDATVT-VGGILNSYKSNFKLGGSDTFLIEADESDGTMLKIPAK 204

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +S   D     G      +  +   ++        +               E+ +I
Sbjct: 205 IAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSAVLPDSVDIDYDAGNSITFGFENGSI 264

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             ++       ++                K    +          VT+         L  
Sbjct: 265 RASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTEMSSQC-----VTLGSSPLKNIVLSN 319

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G  +V NAL A  + I +GI  A + + L +   V  RF  +     G ++  DYAH 
Sbjct: 320 AIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARRFSLIADIK-GVKLIEDYAHH 378

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            N +   L   R+IT G++I +       R +       +I   + D  I+T  +P  + 
Sbjct: 379 PNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRI-FMMFDYVILTPVHPPEDK 437

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           P      + I+  +I       +  N    I   I    +  D+++  G G
Sbjct: 438 PIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFIGAG 488


>gi|58337117|ref|YP_193702.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus NCFM]
 gi|227903691|ref|ZP_04021496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus ATCC 4796]
 gi|62900453|sp|Q5FKV3|MURD_LACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|58254434|gb|AAV42671.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           acidophilus NCFM]
 gi|227868578|gb|EEJ75999.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 459

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 111/393 (28%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y           + PI+        LS              + +TG++GK++     Q+
Sbjct: 84  PYENPMVKKAEELDIPIITEPEV--ALS--------CSDAPYVCITGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKTGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y +AK+ +       +     +    
Sbjct: 176 FQL-LGVTDIKPKVAAIVDIYNNVHLDYHKTFENYVDAKLNVTRTQNSDDYFIANF---D 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K    +  ++ +                   Q   I            LPG   
Sbjct: 232 QKDILAKEKEVSPAKMQTFSETDHNADYFIGDEYLESQDEKIMK-----IADIKLPGVHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 287 LQNSLVAIAIAKLMGADNEDIAAVLSTFTGAKHRLQYVTTLDGRKIYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +   +        V+   G DR      ++  +        ++       E    +   
Sbjct: 347 AIPAFKEPE-----VLIAGGLDRGFTFDDLVP-LFKKHVKSIVL-----YGETKYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E+    DV++
Sbjct: 396 ARKAGIKEIVIVNTLQEAVPRAYELTEPGDVIL 428


>gi|148265303|ref|YP_001232009.1| FolC bifunctional protein [Geobacter uraniireducens Rf4]
 gi|146398803|gb|ABQ27436.1| FolC bifunctional protein [Geobacter uraniireducens Rf4]
          Length = 424

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 21/134 (15%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK-- 398
             PGR E +GT+ R   I +D AH     + + + +  I   R+++V G  GD+D     
Sbjct: 282 HWPGRMEILGTSPR---ILLDGAHNPAGSKALAEALEDIPRDRLLIVAGMMGDKDVDGIL 338

Query: 399 ------RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
                    M  +A  LA          R+   EK+            + G     + +A
Sbjct: 339 GPLLPLADEMLAVAPSLA----------RALPSEKLAEFCRSRGVTAHDAGTVAAGLSSA 388

Query: 453 IEMLNKQDVLVVAG 466
            ++    D+++V G
Sbjct: 389 RDIAGPDDLILVCG 402


>gi|124268449|ref|YP_001022453.1| cytoplasmic peptidoglycan synthetase C-terminal domain [Methylibium
           petroleiphilum PM1]
 gi|124261224|gb|ABM96218.1| cytoplasmic peptidoglycan synthetase, C-terminal domain
           [Methylibium petroleiphilum PM1]
          Length = 448

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/422 (13%), Positives = 103/422 (24%), Gaps = 34/422 (8%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           QGA+     +                ++ V   R  L L       K    ++ V GT+G
Sbjct: 20  QGADLAAWLAHADALHAQTIDMGLERVVKV---RDALGL-------KPGFPLITVAGTNG 69

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K S  + +  +   +G           +    +      P       A          H 
Sbjct: 70  KGSTCALLASVLGAAGYRVGVYSSPHLLRYNERVRIDGAPVGDAALCAAYARVEGARGHT 129

Query: 186 SVEASSHG------------LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +     G            LD   L+          N          +        +  
Sbjct: 130 PLTPFEFGTLAAMCVFAEADLDAAVLEVGLGGRLDAVNAFDADCAIVTSIGIDHVEYLGP 189

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
             E +  E   +  A         +           +G +                  T+
Sbjct: 190 TRESIAVEKSGVFRAGRPAICADPEPPATIAQEARRLGARLLQSGRDYRVRRDPGDTWTL 249

Query: 294 SVEGKDF-----DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           S    +        L            L+A           A  +    +   + GRF+ 
Sbjct: 250 SRRSGELGGLPLPALAGDVQLHNAGACLMALETLARTLPVDAAQIHRGLRQVQLIGRFQR 309

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              +     + +D AH  ++ + +   +      GR + VF    D+D        +   
Sbjct: 310 WRRHPGAPEVLLDVAHNPHAAQRLALTLTQHPVPGRTLAVFAMLRDKDIAGT---AQALR 366

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D  D   V     R        A  +             + ++A R A+      D ++V
Sbjct: 367 DGVDAWFVAGIAERRGASAADMAAALDAAQVQRTVHLSASPLDAYRDALASAGPDDRVLV 426

Query: 465 AG 466
            G
Sbjct: 427 CG 428


>gi|310768193|gb|ADP13143.1| FolC bifunctional protein [Erwinia sp. Ejp617]
          Length = 420

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 101/380 (26%), Gaps = 34/380 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+         ++ V GT+GK +    ++ +   +G           +    +      
Sbjct: 37  AAALDLLTPAPVVITVAGTNGKGTTCRTLETVLLAAGYRVGVYSSPHLVRYTERVRVQGA 96

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   A       G    S+       +   L  + L   +  ++    +       
Sbjct: 97  ELAETAHTASFAAIEAGRAATSLTY----FEFGTLSALWLFKQAQLDVVILEVGLGGRLD 152

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-- 282
           A       +                D  S    K       +   VG       +  V  
Sbjct: 153 ATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRKGKPAVVGEPDMPGTIADVAA 212

Query: 283 ------CAIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                           ++     F          PLP       A   A L  +      
Sbjct: 213 EKGAQLNQRDRDWSYQVNGHSWSFHDASGSIEHLPLPQVPVPNAATALAALRASTLKVDE 272

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFG 389
             +       ++PGRF+ V  + +   + +D AH  ++   +   +  I  G ++  V G
Sbjct: 273 ATIRRSLHQALLPGRFQTVSESPQ---VILDVAHNPHAASYLAGRLAEIKCGAKVHAVVG 329

Query: 390 CGGDRDQGKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
              D+D       G +A      D       + PR        A++   +       +  
Sbjct: 330 MLHDKDIA-----GTLAYLAPQVDYWYCAPLEGPRG----ASAAQLTAHLNAAQSFASVT 380

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
            A   A+     QD+++V G
Sbjct: 381 AAWHHALTQAEPQDIVLVCG 400


>gi|145296342|ref|YP_001139163.1| hypothetical protein cgR_2257 [Corynebacterium glutamicum R]
 gi|140846262|dbj|BAF55261.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 507

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + +      +++D AH  +    +   + R     R+I V G  GD+D      
Sbjct: 364 PGRLERLRSAPT---VFIDAAHNPHGAAALGAALDRDFEFRRLIGVIGVLGDKDA---RG 417

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +         + T   + R+ D   +        G      + +   A+  AIE+   
Sbjct: 418 ILESLEPYLHEIVCTQTASERALDAYDLAEYAREIYGDERVHVQEDLAGAVELAIELAED 477

Query: 459 QDV-----LVVAG 466
            DV     +V+ G
Sbjct: 478 TDVQSGSGVVITG 490


>gi|331083260|ref|ZP_08332373.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404341|gb|EGG83886.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 459

 Score = 51.1 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 108/422 (25%), Gaps = 44/422 (10%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASRLYGKH 113
            +GA+  +   A ++ D    +   T  +  DN     +               ++   +
Sbjct: 52  EKGAKIYIGQRASNITD-DIDLVVYTAAIHEDNPEFACAKEKGIPMITRAELLGQIMKNY 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I         ++ +     + +     +  +G              +        + 
Sbjct: 111 RLPIAVAGTHGKTTTTSMISHVLLEAEADPTISVGGILPAIHGNIRVGNSETFITEACEY 170

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +                                   N+  DH+D+ +      ++  RL
Sbjct: 171 TNSFL----------------------SFFPKISIILNIDADHLDFFKDLDDIRHS-FRL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F E LP +   II  D    +E+  +                           +     +
Sbjct: 208 FAEKLPADGTLIINGDIPNVEEITDKLPCEVITYGLEKAADYTAANITFDETAHASFDCL 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F   +PG   V NAL A  L   +G D   V   +        RF++ G   
Sbjct: 268 HKGQCIGRFSLAVPGLHNVSNALSAIALGEKVGFDLDTVRRGILHFGGTDRRFQYKG-KV 326

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADI 412
            G  I  DYAH    +   LK            VF      R +        +    A+ 
Sbjct: 327 AGVTIIDDYAHHPTEIAATLKTAANYPHKTTWCVFQPHTYTRTKALMDEFADVLAT-AER 385

Query: 413 AIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I+ D     E          +  +I              E     +E     DVL+  G
Sbjct: 386 VILADIYAARETDNLGVSSSDLCDKINERGGKAYYFPTFDEIEAFLLENCINGDVLITMG 445

Query: 467 KG 468
            G
Sbjct: 446 AG 447


>gi|322412250|gb|EFY03158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 452

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 89/278 (32%), Gaps = 22/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D  K      TNL   H+DYH + + Y  A     +  +  E   I+
Sbjct: 166 MELSSFQL--MGVDTFKPHIAVITNLMPTHLDYHGSFEDYV-AAKWRIQAEMTAEDYLIL 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+   S  + K          +            +        + +            +
Sbjct: 223 NANQEISAALAKITKATVIPFSTQEVVDGAYLEDGMLYFKGHPIMPVV--------NLGV 274

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PGE  + NAL A  +    GI   +++E L     V  R + VG            +   
Sbjct: 275 PGEHNIENALAAIAVAKLSGIADDVIVEVLSHFGGVKHRLQLVGKIKDITFYNDSKSTNI 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + +  L         + +V+   G DR      ++  +   L  + I+       E  E
Sbjct: 335 LATQKALSGF----DNKKLVLIAGGLDRGNEFDDLVPDLRG-LKQMIIL------GESAE 383

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +++         + E  +   A   A +     D +++
Sbjct: 384 RMKRAAETANVPYREAADVAAATELAFQEAQAGDTILL 421


>gi|229527526|ref|ZP_04416918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|229335158|gb|EEO00643.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|327485027|gb|AEA79434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae LMA3894-4]
          Length = 451

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 104/355 (29%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             +      GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDTALADVLQRGCWSETEFSGEQGEWQAEKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      EK+  +            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQPSNIPWSVEKVAKQCQQ---PAQVSANMDEFVAMIAKEAQAGDQILV 431


>gi|237654083|ref|YP_002890397.1| UDP-N-acetylmuramate--L-alanine ligase [Thauera sp. MZ1T]
 gi|237625330|gb|ACR02020.1| UDP-N-acetylmuramate/alanine ligase [Thauera sp. MZ1T]
          Length = 471

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 123/417 (29%), Gaps = 54/417 (12%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           S+A    +          I VV    + L+      +G      +A+ GT GK++  S V
Sbjct: 71  STAVKADNPEVVAARERHIPVVPRA-QMLAELMRFKHG------IAIAGTHGKTTTTSLV 123

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I    G+    +     +++   + RL T   +      S  S               
Sbjct: 124 ASILAEGGIDPTFV-IGGRLNAAGANARLGTGDYLVAEADESDASFLL------------ 170

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   +  +    TN+  DH+D +             F   LP    A++  DD   
Sbjct: 171 --------LNPVISVVTNIDADHMDTYGHDFGRVKQAFVDFLHRLPFYGVAVLCEDDPNV 222

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV-TISVEGKDFDFLFPLPGEFQV 312
           +E++ +      R              +      +     ++           LPG   V
Sbjct: 223 REIIPQVAKQIVRYGFSETANIRAENVRAEGGRMRFDCVRVNGTTSRLSIELNLPGLHNV 282

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---------YVDYA 363
            NAL A  +   + +  A +++ L + + V  RF+  G  +   +            DY 
Sbjct: 283 LNALAAIAVATEVQVPDAAIVKALAEFNGVGRRFQRYGEVALHDQDGDEAGRFTLVDDYG 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPR 421
           H    +   +   R    GR  +V      R    R         L+  D  ++ +    
Sbjct: 343 HHPVEMAATIAAARGAFPGRR-LVLAFQPHRYTRTRDCFEDFVKVLSTVDALLLAEVYAA 401

Query: 422 SEDP------EKIRAEII-HGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E P        +   I   G        E  +     R  +      DV++  G G
Sbjct: 402 GETPIVAADGRSLARAIRVAGTVEPVFVEEIADMP---RMILSAARDGDVVITMGAG 455


>gi|215485254|ref|YP_002327685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312966216|ref|ZP_07780442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|215263326|emb|CAS07641.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamateligase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312289459|gb|EFR17353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|320197461|gb|EFW72075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           WV_060327]
 gi|323190230|gb|EFZ75506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           RN587/1]
          Length = 438

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    +    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVCWVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLATRVQPGDMVLL 410


>gi|297581386|ref|ZP_06943309.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534224|gb|EFH73062.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 451

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 112/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R   +         +      +K+ A  ++  V
Sbjct: 205 HHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEF---SGEQGEWQAEKITADGSQFHV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 262 LFKGE-RVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQADDQILV 431


>gi|144897248|emb|CAM74112.1| UDP-N-acetylmuramate--alanine ligase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 474

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 93/283 (32%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+DY+ +     +A  R F E +P    A    D    + ++ R  
Sbjct: 174 LPATCVVVTNIDPEHMDYYGSFDKLRDA-FRTFVENIPFYGFAACCIDHPEVQALIARVP 232

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNA 315
           +          Q               +   +  +              P+ GE  V N+
Sbjct: 233 DRKIVTYGFSPQALIRATNVKIGPGGARYDVVITDRVTGATRIIDDVRLPMYGEHNVLNS 292

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A      +G+ + +V + L     V  RF   G  ++G  +  DY H    +  +LK 
Sbjct: 293 LAAIACANELGLTNDVVRKALGGFSGVKRRFTKTG-EAKGITVIDDYGHHPVEINAVLKA 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAE-- 431
            R+ T+G +I V      R      +  +       AD  IV D     E P        
Sbjct: 352 ARSATTGNVIAVV--QPHRYSRLSSLFPEFCTCFNDADTVIVADVYAAGEQPIDGADRDH 409

Query: 432 ----IIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
               +       +       A+   ++ +    D++V  G G+
Sbjct: 410 LVMGLQEHGHRHVIALPEASALAGIVDGLAKSGDMVVCLGAGN 452


>gi|115492555|ref|XP_001210905.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114197765|gb|EAU39465.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 839

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 137/421 (32%), Gaps = 56/421 (13%)

Query: 68  AEAIVVSSAY-----SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A+ +V SSA         +  A      P++     R  +   AS +        +A+ G
Sbjct: 426 AKLVVASSAATWGSKPNVEVEAARERRIPVIH----RSEM--LASLMRHH---KSIAICG 476

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GKS+  S V  + +  GLS   I                + + +    + +++ S   
Sbjct: 477 SHGKSTTTSMVAGMLEAGGLSPTTI----------------SGAVVTQYGSNAHMGSGNW 520

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V  + S   + Q     +  +    TN+  DHI ++ TQ+    A    F   +P   
Sbjct: 521 MVVEADESDGTMVQ-----LPALISVVTNIDSDHITFYGTQEKTR-ATFAQFVRNVPFYG 574

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--- 299
            A++  DD   ++++    +       V         + V          +SV  +    
Sbjct: 575 LAVLCIDDPGVRKMLPEVQDRNIITYGVSEDADV-RAEDVKYNPQDSTFVLSVRNRRDGT 633

Query: 300 ----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                  +  + G   + NAL    + + +GI+   +   L        R+      + G
Sbjct: 634 RRVVGCIVLNVLGLHNLQNALATTAIALELGIELESIRYALRNFQGTNRRY-IHVGEANG 692

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAI 414
            +I  D+      ++      +   + RII V+      R+          A + +   I
Sbjct: 693 IQIIDDFGTHPAEMKATQTMAKQAGARRIIAVYQPTAVVRNVEAWLEEYPAAFEESAHII 752

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVA 465
           +   +    DP     +    +  ++    R +AI              +  + D +V  
Sbjct: 753 IGQADGVGVDPVP-AGKARETLVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCM 811

Query: 466 G 466
           G
Sbjct: 812 G 812


>gi|15676591|ref|NP_273735.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria meningitidis MC58]
 gi|7225920|gb|AAF41110.1| folylpolyglutamate synthase/dihydrofolate synthase [Neisseria
           meningitidis MC58]
 gi|316983667|gb|EFV62648.1| bifunctional protein folC [Neisseria meningitidis H44/76]
 gi|325139928|gb|EGC62458.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis CU385]
 gi|325200621|gb|ADY96076.1| tetrahydrofolate synthase/dihydrofolate synthase [Neisseria
           meningitidis H44/76]
          Length = 424

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 123/393 (31%), Gaps = 37/393 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           S    R+  +    ++ V GT+GK SV +++ QI +++G     +     +    +    
Sbjct: 28  SEVKKRMKLEPQCPVVVVAGTNGKGSVCAYLTQIYKQAGYKIGTLTSPHLLRYNERIAIN 87

Query: 163 TTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
             P                   I L        +     +  +     L+     RLD +
Sbjct: 88  AEPVSDDTIIASFERIEAARGEISLTYFEFNALAAVDIFMREQVDVMILEVGLGGRLDAV 147

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G    +    +D+          ++   +  + +     I   +   K ++  A  
Sbjct: 148 NAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPKSLLSHAEA 206

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G ++L V  +    H  +    + + +   S +        P P     Y    AA   
Sbjct: 207 IGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDDPARNRNALPFPALRGTYQLSNAACAL 265

Query: 323 IAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
             +   +  +   +        L   PGRF+ +          +D  H  ++   + +++
Sbjct: 266 TVLECLNDKLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARALRRSL 322

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
             +    +   VF    D+D      + +   D  D   +   D PR    E ++ ++  
Sbjct: 323 INLAFAQKRTAVFSMLSDKDIDG---VLETVKDQFDEWYIAPLDVPRGMTLESLQNKLHE 379

Query: 435 G-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             I          EA R A     + D +VV G
Sbjct: 380 HSIENIQTFAAVREAYRAAASKAGENDRIVVFG 412


>gi|284008381|emb|CBA74789.1| UDP-N-acetylmuramate--L-alanine ligase [Arsenophonus nasoniae]
          Length = 515

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 128/416 (30%), Gaps = 53/416 (12%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVA 130
            + A    +  A   +  P++     R+   L+      +G      +A+ GT GK++  
Sbjct: 109 TAIAADNPEIIAAREARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTT 157

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I  ++GL          + +     RL T   +      S  S            
Sbjct: 158 AMIASIYAQAGLD-PTFINGGLVKAAGVHARLGTSRYLIAEADESDASFLH--------- 207

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      ++ +    TN+  DH++ +             F   LP     ++  DD
Sbjct: 208 -----------LQPLVAVITNIEADHMETYDGDFEKLKQTFISFLHNLPFYGRVVLCIDD 256

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + ++ +                 I   K         V       D  F+   PG  
Sbjct: 257 PVVRSLLPQIGRYITTYGFSDDADVRITSYKQRGNQGFFTVA-RENRADLAFILNAPGRH 315

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDY 362
              NA  A  +    GID + +L  L+K      RF+ +G               +  DY
Sbjct: 316 NALNATAAIAVATEEGIDDSAILTALKKFQGTGRRFDLLGNFPLADVNGKKGSVMLVDDY 375

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNP 420
            H    ++  +K  +     + IV+        R +        I     D+ ++ D  P
Sbjct: 376 GHHPTEVDATIKAAKEGWPNKRIVMVFQPHRYTRTRDLYDDFANILEQ-VDVLLMLDVYP 434

Query: 421 RSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             E+P        +   I   G    I      +   T  +++   D++++ G G+
Sbjct: 435 AGEEPIPGADSRSLCRTIRNRGKLDPIFIAEHDQIGETLAKIIEDNDLILIQGAGN 490


>gi|163782320|ref|ZP_02177318.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882353|gb|EDP75859.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 467

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 134/438 (30%), Gaps = 56/438 (12%)

Query: 70  AIVVSSAYSLQDFSATIRS--NTPILVVDNTR-KFLSLFASRLYGKHPENILAVTGTSGK 126
            +V SSA    +           P++     R + L+       G      +AV+G+ GK
Sbjct: 69  VVVYSSAVREDNPELRRAKELGIPVI----PRGEMLAELFKLKEG------IAVSGSHGK 118

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  S V  I + +G     I     +     + +L                        
Sbjct: 119 TTTTSMVAHILEEAGFDPTVI-IGGILQRLGSNAKLGRGD-------------------- 157

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +  S           +       TN+  +H+DY++  +    A  +    +         
Sbjct: 158 LLVSEADESDGSFLKLSPAVNVITNIDLEHMDYYRDLEDIVAAFAKFAGSVPFYGFCVA- 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              D  +      +         +  +   +  +            +    +       +
Sbjct: 217 -NADDPNVRNATSSVTKKLITFGIEKEADVVGTELSIEGGRYAFGVVFKGERLGKIRLSI 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   VYNAL A  + + +G+   +V   LE  H    R E  G    G  IY DY H  
Sbjct: 276 GGRHNVYNALAATAVSLELGVPFEVVRSALEGFHNAERRMELKGF-FGGVPIYDDYGHHP 334

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSE- 423
             +  ++  +R +  GR +V+        +         ++      + ++ D  P SE 
Sbjct: 335 TEIRAVVSALREMYPGRRLVMVFQPHRYSRTHFLFDSFVEVLKLPDLLLML-DIYPASEK 393

Query: 424 -----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-----ETVH 473
                D  ++   +  G     EK N    +    E L + DVL+  G G      E   
Sbjct: 394 NIYGVDARELA--LRSGATFVEEKENV---LSLLEENLREGDVLLFMGAGDITRLCEDFV 448

Query: 474 IVTNGEKKMSVDCDIIRE 491
              +G     ++    +E
Sbjct: 449 KAHSGALPEDLEHQSAKE 466


>gi|168261611|ref|ZP_02683584.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|197265857|ref|ZP_03165931.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244112|gb|EDY26732.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205349472|gb|EDZ36103.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 422

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 117/391 (29%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPA 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V            V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SRLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   + ++A + AI+    +D ++V G
Sbjct: 376 N----VYDSVVQAWQAAIDAAQPEDTVLVCG 402


>gi|153830112|ref|ZP_01982779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
 gi|148874424|gb|EDL72559.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
          Length = 451

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 113/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R   +         +      +K+ A  ++  V
Sbjct: 205 HHLVRTVPGNGRILAPKQDEALADVLQRGCWSETEF---SGEQGEWQAEKITADGSQFHV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 262 LLKGE-RVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  + +    +     D ++V
Sbjct: 380 ADSVYLYQ-------PSNIPWSVEEVAKQCQQPAQVSANMDKFVAMIAKEAQAGDQILV 431


>gi|170021756|ref|YP_001726710.1| UDP-N-acetylmuramate [Escherichia coli ATCC 8739]
 gi|169756684|gb|ACA79383.1| UDP-N-acetylmuramate [Escherichia coli ATCC 8739]
          Length = 457

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 104/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL   +   +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESNFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|315303393|ref|ZP_07874000.1| UDP-N-acetylmuramate--alanine ligase [Listeria ivanovii FSL F6-596]
 gi|313628236|gb|EFR96762.1| UDP-N-acetylmuramate--alanine ligase [Listeria ivanovii FSL F6-596]
          Length = 447

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 72/446 (16%), Positives = 138/446 (30%), Gaps = 61/446 (13%)

Query: 59  FIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           F    I  G   I  ++   + ++    +  + P++      KFL               
Sbjct: 53  FSADNIKSGLTIIAGNAFPDTHEEIERAMELDLPVIR---YHKFLGQLIDGYTS------ 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +   +        +   +   + 
Sbjct: 104 IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEY-----FALEACEYQRHF 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +   T+  +                      TN+  DH DY ++    FNA   L ++ 
Sbjct: 159 LAYKPTYAIM----------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ- 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+    D     + K   +        G   +F     +      +      + 
Sbjct: 196 ---VKKAVFALGDDAE--LRKLTLDVPIIYFGFGEDNEFQAKNVIKETTGTRFDVYHRDE 250

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F  P  G+  V NAL    LC   G+    V   L+    V  RF           
Sbjct: 251 FLASFEIPAYGDHNVLNALSVIALCDYEGLPVEAVKAELKTFEGVKRRFSIT--EKSNQV 308

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVT 416
           +  DYAH  + +   +   R     + +V         + +  + G   +L+LAD   + 
Sbjct: 309 LVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLC 368

Query: 417 D--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHET-- 471
           D   + R +      A++ H   G               E+L     V++  G G     
Sbjct: 369 DIFGSAREKTGNLTIADLAHKTKGNHIIKE-----EHTEELLKYPGAVILFMGAGDVQKF 423

Query: 472 ---VHIVTNGEKKMSVDCDIIREILG 494
                 V + E+    D ++ +  + 
Sbjct: 424 QAAYEKVLDQEEI--TDAEVKKSAIN 447


>gi|301336324|ref|ZP_07224526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum MopnTet14]
          Length = 416

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 65/198 (32%), Gaps = 14/198 (7%)

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +  ++  +        ++V  S++  D +           YN   A  L  A   
Sbjct: 201 CMQNPENLWVGDQLFSKRVYWEEVQKSMDLLDKESALKPLYLHDKYNYCCAYLLAQAEFP 260

Query: 328 DSALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            +  +           P R E++G       I    A T ++ E  L +I     G   +
Sbjct: 261 IAKSLFIEAVATFKKPPHRMEYLGERRGVHYINDSKATTVSATEKALLSI-----GSRAI 315

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           V   G ++      ++   AL  A   ++       E   +I  + + G P      +  
Sbjct: 316 VILGGRNKGYTFSALLP--ALRRAAKRVIAM----GESAPEIARD-LEGFP-VTVVRDLQ 367

Query: 447 EAIRTAIEMLNKQDVLVV 464
           EA+  A E     D++V+
Sbjct: 368 EALLCAEEQAVPGDIVVL 385


>gi|188496127|ref|ZP_03003397.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 53638]
 gi|193069798|ref|ZP_03050748.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E110019]
 gi|331671140|ref|ZP_08371973.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA271]
 gi|188491326|gb|EDU66429.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 53638]
 gi|192956852|gb|EDV87305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E110019]
 gi|309704739|emb|CBJ04090.1| murein peptide ligase [Escherichia coli ETEC H10407]
 gi|331061729|gb|EGI33655.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA271]
          Length = 457

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 104/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL   +   +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESNFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|227513548|ref|ZP_03943597.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC
           11577]
 gi|227083421|gb|EEI18733.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus buchneri ATCC
           11577]
          Length = 443

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 91/294 (30%), Gaps = 33/294 (11%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K      TN+  DH DY++      +A      +          + DD   +++  + 
Sbjct: 163 ATKPDYAIMTNIDFDHPDYYKNIDDVQDAFQTFANQTKKG---IFAWGDDKRLRKLKAKI 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                                V          +  +GKD  +F  PL GE  ++N+L   
Sbjct: 220 P----IYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPLFGEHNIFNSLAVI 275

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +  +  +D   +   L+    V  RF     +  G  I  DYAH    ++  +   R  
Sbjct: 276 AVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS--GMTIIDDYAHHPTEIKATIDAARQE 333

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
              + I V        +    +M   A   +LAD   +T    +PR    +    ++   
Sbjct: 334 YPSKKIAVVFQPHTFSRTI-ALMDDFAKSLNLADEVFLTQIYSSPRESSGKVSSEDLSRK 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGKGHETVHIVTNGEKKMSV 484
           I       +         + ++       DV++  G G      +   EK    
Sbjct: 393 ITKGGRILS--------SDNMSPLLDYDNDVIIFMGAG-----DIQKYEKTYED 433


>gi|83309265|ref|YP_419529.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
 gi|82944106|dbj|BAE48970.1| UDP-N-acetylmuramate-alanine ligase [Magnetospirillum magneticum
           AMB-1]
          Length = 465

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 12/147 (8%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
                 L +   V  R E VGT   G  +  D+AH  + +   L  +     GR++V+F 
Sbjct: 303 EDAATALGEFSGVRRRLETVGTKG-GVTVIDDFAHNPDKISATLATLHD-WPGRLLVMFQ 360

Query: 390 C--GGDRDQGKRPIMGKIALDLADIAIVTDDNP--------RSEDPEKIRAEIIHGIPGF 439
               G     K   +   A  L    ++   +P        RS     +   I       
Sbjct: 361 PHGFGPLRLMKDEFVACFAERLGPDDVLVMPDPVYFGGTVDRSVTSAHLAEAITARGRRA 420

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +    R       +EM    D +VV G
Sbjct: 421 LAVPERAACGDALVEMARPGDRIVVMG 447


>gi|237720379|ref|ZP_04550860.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_2_4]
 gi|229450130|gb|EEO55921.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_2_4]
          Length = 466

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 109/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQSHVECTAF-LGGISKNYGTNLLLSQTSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T+   DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMTV-------------------ITSTDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           N R      DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+D+L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEDIL 425


>gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           parainfluenzae T3T1]
          Length = 437

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 61/399 (15%), Positives = 125/399 (31%), Gaps = 61/399 (15%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   +++        +  + V+ +                 + I+ +TG++GKS+V
Sbjct: 69  IIVISPGLAVKTPEIQTALSAGVEVIGDIE--------LFCRAATKPIIGITGSNGKSTV 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ + +G+     G                   + L        ++      +E 
Sbjct: 121 TTLVYEMAKAAGIKVGMGGNIGIP-------------ALSL-------LNEDCDLYVLEL 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +K  A +  N+  DH+D +   + Y  AK+R++         A++  +
Sbjct: 161 SSFQLET--TYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIY----HNAETAVVNLE 214

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +    +                          +  K++V +  +             
Sbjct: 215 DKLTFGEGENQAKKVVSFAENQADYWLKTENGKQYLMAKEEVILPCDEATLVGRHNY--- 271

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  L  A+GI+   +   L +   +  RF+     +    I    A    S 
Sbjct: 272 ---MNILAATALAQAVGINLEAIRTALRQFKGLDHRFQLAHQANGVRWINDSKATNVGST 328

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA----IVTDDNPRSEDP 425
              L  +     G + ++ G  G          G    +LAD+     I T    R    
Sbjct: 329 VAALAGL--YVEGTLHLLLGGDGK---------GADFSELADLINQPHISTYCFGRD--- 374

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++              +AI      L   D++++
Sbjct: 375 ---GKQLAALSSQSHLFETMEQAISFLRPHLKSGDMVLL 410


>gi|206578645|ref|YP_002240437.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288937137|ref|YP_003441196.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|290512560|ref|ZP_06551926.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
 gi|226706325|sp|B5Y1U6|MURC_KLEP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206567703|gb|ACI09479.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288891846|gb|ADC60164.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|289774901|gb|EFD82903.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 491

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQITTYGFSDDADVRVEDYR-QLGAQGHFRLVRQDKEILQVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDQAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAMLIDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +A      +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKVDPILVSDPAQAAEMLASVLTGNDLVLVQGAGN 467


>gi|296532819|ref|ZP_06895494.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
 gi|296266856|gb|EFH12806.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
          Length = 478

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 83/434 (19%), Positives = 142/434 (32%), Gaps = 61/434 (14%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A   GA  +VV+S    +D    + +   ++ V    + L+      +G    
Sbjct: 59  GHD----AGNLGAAQVVVTSTAVKRDNPEVVAARQRLIPVVRRAEMLAELMRLKWG---- 110

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+ GT GK++  S V  + + + L    I     I+++  + RL             
Sbjct: 111 --IAIGGTHGKTTTTSLVATVLEAAKLDPTVI-NGGIINAYGTNTRLGEGD--------- 158

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + VEA        RL  +       TN+  +H+D+  T++A      +   
Sbjct: 159 --------WMVVEADESDGSFLRLPAVA---AVVTNMDAEHLDHWGTEEAMKQGYAQFVG 207

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    A++ AD    + ++                           +    +VT+  
Sbjct: 208 N-IPFYGFAVLCADHPNVQAMIPHLDRRLITYGFSPQADVRAERLITDRMGATFEVTVQD 266

Query: 296 E-----GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                         P+ G+  V NAL A  + I + ID   +   L     V  RF  VG
Sbjct: 267 RLTGRSRSLKPMRLPMLGQHNVQNALAAIAVGIEMDIDEGTIRSALLGFKGVKRRFTRVG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               G +I  DY H    +  +LK  R   +  +I V      R    + +  +    + 
Sbjct: 327 -EVNGVQIIDDYGHHPVEIAAVLKAARQAGARDVIAVV--QPHRYSRLKQLFEEFCQCMN 383

Query: 411 DI--AIVTDDNPRSEDP------EKIRAEIIHG-------IPGFIEKGNRIEAIRTAIEM 455
           D    IV D     E P      + +   +          +PG       I AI      
Sbjct: 384 DAGTVIVADVYAAGEQPIPGADRDALIDGLRAHGHRSVVPLPGPDSLPEMINAI------ 437

Query: 456 LNKQDVLVVAGKGH 469
               D +V  G G+
Sbjct: 438 AKPGDYVVCLGAGN 451


>gi|256375307|ref|YP_003098967.1| FolC bifunctional protein [Actinosynnema mirum DSM 43827]
 gi|255919610|gb|ACU35121.1| FolC bifunctional protein [Actinosynnema mirum DSM 43827]
          Length = 452

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 17/135 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E +        + VD AH  +  E + K +       R+I V G   D+D      
Sbjct: 307 PGRLERLRAAPA---VLVDAAHNPHGAEALAKALDEEFGFRRLIAVVGVMSDKDA---VG 360

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLN- 457
           +           ++T + +PR+ D + +    +   G    + + N  +AI  A+ M   
Sbjct: 361 ILTALEPRVAEVVLTQNSSPRAMDADHLAGVALPIFGEDRIVVQPNLADAIEDAVRMAED 420

Query: 458 ------KQDVLVVAG 466
                     ++V G
Sbjct: 421 TEDGLVSGGGVIVTG 435


>gi|72162589|ref|YP_290246.1| folylpolyglutamate synthetase [Thermobifida fusca YX]
 gi|71916321|gb|AAZ56223.1| folylpolyglutamate synthetase [Thermobifida fusca YX]
          Length = 443

 Score = 51.1 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+     + VD AH    +    + +R   T  R++ V     D+D      
Sbjct: 302 PGRLEIVRTSPT---VLVDAAHNPAGMAATGEAVRESFTFDRLVGVVAVLADKDAEG--- 355

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIR--AEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           + +    L D  +VT + +PR+   +++R  AE + G           +AI  A+ +  +
Sbjct: 356 ILEPLEPLLDEIVVTVNSSPRALPVDRLRETAEAVFGPDRVHAALRLDDAIDQAVALAER 415

Query: 459 -----QDVLVVAG 466
                   +++ G
Sbjct: 416 DAEFGGGGVLITG 428


>gi|81428460|ref|YP_395460.1| putative polylpolyglutamate synthase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610102|emb|CAI55151.1| Putative polylpolyglutamate synthase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 434

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            PGRFE V   +    I +D AH    +E  +           I ++FG  GD+      
Sbjct: 301 WPGRFEKV---NDEPLIILDGAHNPAGVEQLVKTAKHQFKHQDIYILFGALGDKSL---A 354

Query: 401 IMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLN 457
            M      LA   ++T   DNPR+    +  A     +   I  + +   A+ T +  L+
Sbjct: 355 GMLPELNQLATHLVLTTVPDNPRAATQAQYAA-----VDNTIPFEADWPVALTTMVSELS 409

Query: 458 KQDVLVVAG 466
             DVL+V G
Sbjct: 410 ADDVLLVTG 418


>gi|330469643|ref|YP_004407386.1| FolC bifunctional protein [Verrucosispora maris AB-18-032]
 gi|328812614|gb|AEB46786.1| FolC bifunctional protein [Verrucosispora maris AB-18-032]
          Length = 477

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 17/135 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T      I +D AH    +   +  ++      +++ V G   D+D      
Sbjct: 335 PGRLERVRTAPT---ILLDGAHNPQGMAATVTALQEEFAFSKLVAVVGTLADKDA---AS 388

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLN- 457
           M ++   + D  +VT + +PR+   +++ A      G           +AI  A+ +   
Sbjct: 389 MLELLEPVVDQVVVTRNSSPRALPADELAALAAEVFGPDRVEVAEEMPDAIEAAVALAEE 448

Query: 458 --KQDV----LVVAG 466
               ++    ++V G
Sbjct: 449 DVPGELAGVGVIVTG 463


>gi|325662354|ref|ZP_08150963.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471356|gb|EGC74579.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 450

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 102/298 (34%), Gaps = 19/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + L  +  +    E SS  L+   +D       +  N+  DH++ H T +AY 
Sbjct: 144 IGTPYTGASLEMKEDSVTVAEMSSFQLET--IDTFHPKVSAILNITPDHLNRHHTMEAYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  + +    ++   + Y +D   +   ++ H       S     + I+L+    I+ 
Sbjct: 202 QAKEEITKNQTEEDVCVLNY-EDEVLRAFGEKLHTQVLYFSSRRKLERGIYLEDGKIIYA 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +  +  + ++      L G     N + A+ +  A G+  + + E +     V  R E
Sbjct: 261 DGKPEVLCKVEEL----KLLGTHNYENVMAASAMAAAYGVPLSSIRETIRNFGGVAHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV                 ++    ++        R  ++ G G D++      +     
Sbjct: 317 FVAEKEGVAYYNDSKGTNPDAAIKAVEA-----MNRPTILIGGGYDKNSSYDEWIDSFGE 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + +V          EKI       G    I      EA+  +  +  + D +++
Sbjct: 372 KVRYLVLV------GATKEKIAETARRKGFDNVILADTFEEAVMESARLAREGDAVLL 423


>gi|295086276|emb|CBK67799.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           XB1A]
          Length = 466

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 109/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQSHVECTAF-LGGISKNYGTNLLLSQTSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T+   DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMTV-------------------ITSTDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           N R      DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+D+L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEDIL 425


>gi|227524691|ref|ZP_03954740.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii
           ATCC 8290]
 gi|227088175|gb|EEI23487.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus hilgardii
           ATCC 8290]
          Length = 443

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 91/294 (30%), Gaps = 33/294 (11%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +      TN+  DH DY++      +A      +          + DD   +++  + 
Sbjct: 163 ATEPDYAIMTNIDFDHPDYYKNIDDVQDAFQTFANQTKKG---IFAWGDDKRLRKLKAKV 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                                V          +  +GKD  +F  PL GE  ++N+L   
Sbjct: 220 P----IYYYGLNDTDDFQAFDVKRTTKGSSFHVRFKGKDLGEFTVPLFGEHNIFNSLAVI 275

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +  +  +D   +   L+    V  RF     +  G  I  DYAH    ++  +   R  
Sbjct: 276 AVAYSEDVDLEEIRRELKTFDGVKRRFSERKIS--GMTIIDDYAHHPTEIKATIDAARQE 333

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDD--NPRSEDPEKIRAEIIHG 435
              + I V        +    +M   A   +LAD   +T    +PR    +    ++   
Sbjct: 334 YPSKKIAVVFQPHTFSRTI-ALMDDFAKSLNLADEVFLTQIYSSPRESSGKVSSEDLSRK 392

Query: 436 IPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGKGHETVHIVTNGEKKMSV 484
           I       +         + ++       DV++  G G      +   EK    
Sbjct: 393 ITKGGRILS--------SDNMSPLLDYDNDVIIFMGAG-----DIQKYEKTYED 433


>gi|170748773|ref|YP_001755033.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           radiotolerans JCM 2831]
 gi|229620046|sp|B1LXZ3|MURC_METRJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170655295|gb|ACB24350.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 468

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 137/420 (32%), Gaps = 55/420 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A    +          + VV   R+   L+           ++ +A+ GT G
Sbjct: 67  AALVVVSTAIRRDNPELQAARERRLPVV---RRAEMLAELMRF------KSCVAIAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +     L    I     I+++  + R+     + +    S          
Sbjct: 118 KTTTTSLVATLLDAGNLDPTVI-NGGIINAYGTNARMGAGEWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+  +  A  +A  R F + +P    A+
Sbjct: 168 -----------GTFLKLPADVAIVTNIDPEHLDHFGSFDAIKDA-FRRFIDNIPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEGKD 299
           +  D    ++++    +          Q     +       +       +        + 
Sbjct: 216 MCIDHPVVQDLVGHIEDRRIITYGENPQADVRLIDVDLRGGQSRFRVMIRDRRPGYRMEM 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG+    NA  A  +   +G+    + + L     V  RF   G    G  I+
Sbjct: 276 EDLVLPMPGKHNALNATAALAVAHELGVKPDAIRQALAGFGGVKRRFTRTG-EWNGATIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    ++ +LK  R  T   +I V      R    + +          AD  IV  
Sbjct: 335 DDYGHHPVEIKAVLKAARASTEHGVIAVV--QPHRYTRLQSLFDDFCTCFNDADTVIVAP 392

Query: 418 DNPRSEDPEKI--RAEIIHGI-------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E P +   R  ++ G+          +E+   +  I    ++    D +V  G G
Sbjct: 393 VYAAGEQPIEGFDRDSLVAGLRSRGHRDARALERPEELAGIIA--DLAKPGDYVVCLGAG 450


>gi|119026124|ref|YP_909969.1| hypothetical protein BAD_1106 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765708|dbj|BAF39887.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 285

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 57/182 (31%), Gaps = 11/182 (6%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
              + P    E  I  ++ D   ++ G +FV       D H  + QA  QGA   +V  A
Sbjct: 15  GFDLDPTSAAEVTITSIADDVESVRPGALFV--PSADVDVHQ-LSQAQEQGAYGAIVPHA 71

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS----SVASF 132
              Q    T     P++  + T   L    S + G   + +     T        S    
Sbjct: 72  LRGQ----TDDIQIPLIYAEPTMGQLGKLVSDMAGNPSDALAVFAITGKNREIVESEVRN 127

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +       G     I  + + S     N     S I + + ++  +  G   V +     
Sbjct: 128 LADFLHMLGNPVGVISSSDSQSLERFLNLEYPLSAIDVQRTMAVCAEDGAAAVILALDEE 187

Query: 193 GL 194
            L
Sbjct: 188 TL 189


>gi|154488897|ref|ZP_02029746.1| hypothetical protein BIFADO_02206 [Bifidobacterium adolescentis
           L2-32]
 gi|154083034|gb|EDN82079.1| hypothetical protein BIFADO_02206 [Bifidobacterium adolescentis
           L2-32]
          Length = 281

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 57/182 (31%), Gaps = 11/182 (6%)

Query: 17  QLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSA 76
              + P    E  I  ++ D   ++ G +FV       D H  + QA  QGA   +V  A
Sbjct: 11  GFDLDPTSAAEVTITSIADDVESVRPGALFV--PSADVDVHQ-LSQAQEQGAYGAIVPHA 67

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS----SVASF 132
              Q    T     P++  + T   L    S + G   + +     T        S    
Sbjct: 68  LRGQ----TDDIQIPLIYAEPTMGQLGKLVSDMAGNPSDALAVFAITGKNREIVESEVRN 123

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +       G     I  + + S     N     S I + + ++  +  G   V +     
Sbjct: 124 LADFLHMLGNPVGVISSSDSQSLERFLNLEYPLSAIDVQRTMAVCAEDGAAAVILALDEE 183

Query: 193 GL 194
            L
Sbjct: 184 TL 185


>gi|24375706|ref|NP_719749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
 gi|30316031|sp|Q8E9P6|MURD_SHEON RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24350640|gb|AAN57193.1|AE015855_4 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
          Length = 439

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 126/397 (31%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   ++         +  I V+ +   F    A R        ++ +TG++GK+
Sbjct: 67  ATQIIISPGIAMNTPEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKT 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L K  + +         +
Sbjct: 122 TVTTLVGEMLREAGIAVAVGGNIGIP-------------ALDLLKENADI-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDA 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                          A       G     I+      +                    L 
Sbjct: 220 LTIPTEPMNQNSFGLAPPEGDEWGICDSKIYHGHSEIMPIT--------------EVSLI 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+G+D  ++         +  R E VG       +    A    
Sbjct: 266 GSHNHANLLAAMALVYAVGVDKQVMANVARTFTGLSHRCEVVGVKGGVTYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +         ++   GGD   GK      +   L     VT       D  K
Sbjct: 326 ATVAALDGLSDHLGD---IILIAGGD---GKGADFSPLEEPLTK---VTHLITLGRDGNK 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I A +  G    I+  +   A+  A ++    D++++
Sbjct: 377 IAA-LKEG---AIKVDSMAAAVAKAAQLATSGDIVLL 409


>gi|121601881|ref|YP_989227.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella bacilliformis
           KC583]
 gi|166222956|sp|A1UTC4|MURC_BARBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|47779263|gb|AAT38531.1| MurC [Bartonella bacilliformis]
 gi|120614058|gb|ABM44659.1| UDP-N-acetylmuramate--alanine ligase [Bartonella bacilliformis
           KC583]
          Length = 475

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 138/434 (31%), Gaps = 49/434 (11%)

Query: 50  VGNKED-GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            G     GH    QA   G AE +V+S+A    +          + VV    + L+    
Sbjct: 51  KGINVHIGH----QAKNLGEAEVVVISTAIKKTNPEYIAAKEKHLPVVKRA-EMLAELMR 105

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                     +A+ GT GK++  S V  +          I     I+++  + R+     
Sbjct: 106 F------RQAIAIGGTHGKTTTTSMVAALLDAGNFDPMVI-NGGIINAYGTNARMGNG-- 156

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 +        T + + A                    TN+  +H+D++ +  A  
Sbjct: 157 ---NWMVVEADESDGTFLKLPAD---------------IVVVTNIDSEHLDHYGSFDAVR 198

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
               R F E +P    A++  D    + +  R  +          Q     L        
Sbjct: 199 -ESFRQFVENVPFYGFAVMCLDHPEVQTLASRIDDRWVITYGANPQADVRFLNFSMKNKK 257

Query: 288 KQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                +    K            P+ G+  V NA  A  +   +GI   ++ + L +   
Sbjct: 258 AHFDVLIRSRKTGIQTELRDLVLPMSGKHNVSNATAAIAIAHELGISDEVIRKGLAEFGG 317

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  RF   G + RG  ++ DY H    ++ +L+  R  T+G++I +              
Sbjct: 318 VKRRFTQTG-SWRGIDVFDDYGHHPVEIKAVLRAARESTNGQVIAIAQPHRYSRLCNLFD 376

Query: 402 MGKIALDLADIAIVTDDNPRSEDP------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIE 454
                 + AD  ++       E+P      +++   I +          +  + +     
Sbjct: 377 DFTTCFNDADTIMIAPVYAAGEEPITGFGSKELVEHIQMASHCDVRLIDDLEDVVSIVST 436

Query: 455 MLNKQDVLVVAGKG 468
           +    D +V  G G
Sbjct: 437 VAKSGDYVVFLGAG 450


>gi|297583948|ref|YP_003699728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
 gi|297142405|gb|ADH99162.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
          Length = 455

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 137/394 (34%), Gaps = 57/394 (14%)

Query: 76  AYSLQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            Y        +    P++  V+         A+        +++ +TG++GK++  +   
Sbjct: 82  PYDHPLIKKALHMRIPVITEVE----IAGEIAA-------CDMIGITGSNGKTTTTTMTA 130

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            + + S  +    G    ++S   D  L  P  I +                VE SS  L
Sbjct: 131 SMLENSPKNPKAAGNIGEVASKVADASL--PEDILV----------------VELSSFQL 172

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                +  K     F NL   H+DYH T   Y  AK R+F     K+   I  ADD    
Sbjct: 173 Q--GTNRFKPHIAVFLNLIEAHLDYHGTMDDYAQAKARIFRN-QSKDDVLIYNADDPLVS 229

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            + ++A +      +        ++K          + +  E       F LPG++ + N
Sbjct: 230 SLAEQADSTCIPFSTQRIVDGGSYIKD-------GDIVVLGEVLMRRDDFSLPGDYNLSN 282

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L AA   +  G D   V   L     V  R ++V T +         A    +    L+
Sbjct: 283 GLAAATAAMKAGADPEQVRHVLASFEGVKHRLQYVDTVNGVRYFNNSKATNVPATVKALE 342

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPI---MGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
                  G  I++   G DR      +   MG+    L     VT      E  +K+   
Sbjct: 343 AF----PGERIILIAGGLDRKLSFDDLYAPMGQSVKGL-----VT----YGETADKLAEA 389

Query: 432 II-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               G+   ++     EA+R A E+  + D++++
Sbjct: 390 GRSAGVETILKTTTLEEAVRKAEEISEESDIILL 423


>gi|78485922|ref|YP_391847.1| UDP-N-acetylmuramate [Thiomicrospira crunogena XCL-2]
 gi|78364208|gb|ABB42173.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 458

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 132/417 (31%), Gaps = 59/417 (14%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+++G  A+           +  + ++ P  + +N  K                ++A
Sbjct: 66  IGNALSRGHAAV------EATLNAQQLYTSGPQWLAENILK-------------DRWVVA 106

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           V GT GK++ AS V  I + +GL    +       +F    RL        A     + +
Sbjct: 107 VAGTHGKTTTASMVAWILEHAGLQPGFL-IGGVPENFGVSARLG-------ASPFFVVEA 158

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                   +  S  +  H             NL  DH D      A    K         
Sbjct: 159 DEYDTAFFDKRSKFVHYH------PRTCVLNNLEFDHADIFDDLAAIQ--KQFHHLVRTV 210

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +  II   D  + + + +               +     ++ +               
Sbjct: 211 PGNGLIIQPSDETNIDEVIQQGCWTPLETQGSQSTQADWAYQLLSDDGTAYEVYYKGQLR 270

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            +  + + G   V N + A       G+     ++ L     V  R   +G    G  +Y
Sbjct: 271 GEVHWQMTGLHNVRNGVSAIAAAQHCGVPVEEAIQGLCAFEGVRRRMTQIG-TVNGIVVY 329

Query: 360 VDYAHTSNSLEMILKNIRTI-----TSGRIIVVFGCGGDRDQGKRPIMG------KIALD 408
            D+AH   ++EM L  +++      TSGR+I VF     R    R  MG        A D
Sbjct: 330 DDFAHHPTAIEMTLSGMKSQLKARPTSGRLIAVFEP---RSNTMR--MGVHQNSLPAAFD 384

Query: 409 LADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD      D +     P+ +    +     + +  +R       ++ L  +D +V+
Sbjct: 385 QADAVYAFIDPDWNWSMPKDLFKVPVKVADTYNDLLDR------LVDELLPEDTVVI 435


>gi|14324984|dbj|BAB59910.1| folylpolyglutamate synthase [Thermoplasma volcanium GSS1]
          Length = 407

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 100/310 (32%), Gaps = 19/310 (6%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
           NR  T   +    A  Y   + V + SVE    G    RLD   +I    + + +   ++
Sbjct: 89  NRNPTFFEVTTMMAFQYFKDRKVDYASVEVGLGG----RLDATNIIMPEVSVIAQVGYEH 144

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                    +       ++ +  P ++  D      V+           S         +
Sbjct: 145 ADKLGCSLTSIAYEKAGIIKEGRPIVLQDDKPE---VVNEVRRIAQVKHSPLITLDRNKI 201

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEK 338
           K +    N            +     L G++Q  NA  A   +  +        +E    
Sbjct: 202 KNLHVDENGTDFDFDGTNDTYHIHTSLIGDYQALNAATAILAVENSKVQVYKKDIETGIS 261

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
             + PGR E      R   + +D AH   +   +++ ++ + +    +V G   D+D   
Sbjct: 262 RTIWPGRLEI---IDRSPLVIIDAAHNPPAANKMVRTVKKVFNREPTIVAGILSDKDA-- 316

Query: 399 RPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                 +   L+   I T   +  R+ DP  + A+  +         + I A   A ++ 
Sbjct: 317 -YSFFSVLRQLSGKIIFTTPEEKERAVDPNILMAQYGNLFRSARVIPDPISAFEHAKKV- 374

Query: 457 NKQDVLVVAG 466
              D + V G
Sbjct: 375 --DDFVFVTG 382


>gi|303290893|ref|XP_003064733.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453759|gb|EEH51067.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 624

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 32  EVSSDSRHIQAGWIFVAIVGNKEDGH-LFIPQAIAQ-GAEAIVVSSAYSLQDFSATIRSN 89
            V++D+R +  G  F+A+VG   D H  F+   +       ++ S           +++ 
Sbjct: 102 SVTTDTRDVAGGKWFLALVGETRDAHEEFVNDELQNTECVGVISSRPPPGSWRKGYVQTA 161

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
                  +    L   AS +  + P +  ++ VTG+ GK++  +   +     G+     
Sbjct: 162 C------DPTTALQRLASDVRDRFPPDVVVVGVTGSVGKTTTRALTARALASLGVVHQTS 215

Query: 148 GPTSTISSFAQDNRLTTPS 166
           G  +           T P 
Sbjct: 216 GNFNNHVGLPLTLLKTPPD 234


>gi|159897132|ref|YP_001543379.1| FolC bifunctional protein [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890171|gb|ABX03251.1| FolC bifunctional protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 435

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  L       S   +         P RFE +          VD AH  +S  ++L+ +
Sbjct: 271 AALLLRELGFPISDDAIRQGLATTQWPARFEQIANEPL---TLVDGAHNGDSARVLLQAL 327

Query: 377 RTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH 434
           +   S R + +V G   D+D      + +   + A   I T   +PR+  PEK+   I  
Sbjct: 328 KQNYSNRPLTLVLGTSSDKDIQ---AIIQQLSNSATHLITTCSRHPRALAPEKLAELIQQ 384

Query: 435 GIPGFIEKGN-RIEAIRTAIEMLNKQDVLVVAG 466
            +   + + N   EA+  A ++ +   ++ V G
Sbjct: 385 HVNRPVHQTNSVAEALTLAQQLTSAAGLICVTG 417


>gi|238918401|ref|YP_002931915.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase, [Edwardsiella ictaluri 93-146]
 gi|238867969|gb|ACR67680.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase, putative [Edwardsiella ictaluri 93-146]
          Length = 458

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 104/359 (28%), Gaps = 38/359 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             ++A+ GT GK++ A  V  I +  G    F IG      S +     +    I   + 
Sbjct: 103 RWVIAIAGTHGKTTTAGMVNWILESCGYEPGFVIGGVPGNFSVSARLGNSPFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +    V                         NL  DH D          A  R 
Sbjct: 163 DCAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDL----RAIQRQ 203

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  L+            A    + +           +       ++ ++ A  +   V++
Sbjct: 204 FHHLVRLVPGKGRIILPAGDASLKQVMAMGCWSEQELCGDEAAWNVTRLSADASHFSVSL 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  +  + L GE  ++N L+A      +G+  A     L        R E  G   
Sbjct: 264 DGAC-VGEVQWTLVGEHNMHNGLMAIAAARHVGVPPAEACRALGSFINARRRLELRGQA- 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------KI 405
            G  +Y D+AH   ++   L  +R    G  RI+ V        +     MG        
Sbjct: 322 HGVSVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP-----RSNTMKMGVCKNELAP 376

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AL  AD   +         P ++       +       +    +   ++     D ++V
Sbjct: 377 ALGRADEVYLYQPQH---IPWQVVEVAEACVQPAYWSADLGTLVEMIVKNAQPGDHILV 432


>gi|114045894|ref|YP_736444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-7]
 gi|113887336|gb|ABI41387.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-7]
          Length = 439

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 125/406 (30%), Gaps = 72/406 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I++S   ++         +  I V+ +   F    A R        +L +TG++GKS
Sbjct: 67  AKQIIISPGIAIDTPEVRAALDMGIEVIGDVELFAREIADR-----KPCVLGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + +         +
Sbjct: 122 TVTTLVGEMLREAGMAVAVGGNIGIP-------------ALDLLTENADI-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +    AY  AK+RL+ +           
Sbjct: 162 ELSSFQLET--THSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDA 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                          A       G     I+      +                    L 
Sbjct: 220 LTIPTEPMNQNSFGLAPPEGDEWGICDSKIYHGHSEIMPIT--------------EVSLI 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N L A  L  A+G+D  ++ +       +  R E VG  +    +    A    
Sbjct: 266 GSHNHANLLAAMALVYAVGVDKQVMAKVARTFTGLSHRCEVVGVKAGVTYVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  +         ++   GGD                AD       +P  E   K
Sbjct: 326 ATVAALDGLSDHLGD---IILIAGGD-------------GKGADF------SPLVEPLTK 363

Query: 428 IRAEIIHGIPGFIEKGNRIEAIR---------TAIEMLNKQDVLVV 464
           +   I  G  G      +  AI+          A E+    D++++
Sbjct: 364 VTHLITLGRDGNKVAALKEGAIKVDSMAAAVAKAAELATSGDIVLL 409


>gi|332307080|ref|YP_004434931.1| FolC bifunctional protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174409|gb|AEE23663.1| FolC bifunctional protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 426

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 109/373 (29%), Gaps = 44/373 (11%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT+GK +  +F++Q C  +G           I    +                   
Sbjct: 56  VTVAGTNGKGTTCAFIEQACLAAGKKVGVYSSPHLIDYTERVRINGVDGSEQAHCRAFQA 115

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT----------------NLGRDHIDYHQ 221
             +    + +       +   L G+K I  +                  N+    I    
Sbjct: 116 VERARGEIPLTY----FEFGTLAGLKFIHDANVDIALLEIGLGGRLDAVNVVSPDIAVIT 171

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +             + L     A I   +          ++A    ++      +   + 
Sbjct: 172 SIDLDHQ-DWLGDTKELVAAEKAGIMRPNIPVVIGESVKYHALIDAVASNNASAWWQRQD 230

Query: 282 VCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                    +T +     +     P      V   L    +           + H+ K  
Sbjct: 231 FEYQVENDVMTWTNHDVSYLHLPLPHIPMQNVSTGLQVLQILELGLT--EEQIAHVIKGT 288

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGR + +  + +   + VD AH  ++   +L  I       + +V G   D+D     
Sbjct: 289 RVPGRCQILSQSPK---VMVDVAHNPHATGYLLSQIAKCDYNNLFLVVGMLKDKD----- 340

Query: 401 IMGKIALDLADIAIVTD-------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
               I   LAD + +         D PR     +I   ++      +E     +A   A 
Sbjct: 341 ----IKASLADFSQLGAQWMLGGLDVPRGATAGEI-KSVLDEQQKVLEFSTVAQAFEKAN 395

Query: 454 EMLNKQDVLVVAG 466
            + ++QD++VV G
Sbjct: 396 ALAHEQDLIVVFG 408


>gi|227535241|ref|ZP_03965290.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187125|gb|EEI67192.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 459

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 100/339 (29%), Gaps = 21/339 (6%)

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
              V+         +   +        + +  + +       I +  +           +
Sbjct: 106 AYQVSEAQWIGITGTNGKTTTTTLIGLMLNQQRPHHAFDAGNIGIPVSQVAQKVGKDDTI 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  L    +  +       TN+   H+D+H  +  Y  AKMR+     P +   +
Sbjct: 166 VAELSSFQL--CGIKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIM 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +       E+ K++            +G    L           +T   +         
Sbjct: 224 NWDL-PEMHELAKQSKAQIVPFSRKNAEGARAQLID-------GWLTFDGDRIMKASEMQ 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL A       G+    + E L     V  R +++ T           A  
Sbjct: 276 IPGLHNIENALAAIAAVKLEGVGDDAIREVLRTFSGVKHRIQYLETIDGRRVYNDSKATN 335

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +  + L           IV    G DR      +   +   +  + +     P     
Sbjct: 336 VEAATVALNAFDQ-----PIVWLAGGLDRGLPMDALTPLVKKHVKSMVVFGQTAPLM--- 387

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            KI  +   G+P      N + A+  A E+    DV+++
Sbjct: 388 GKIAKD--AGVP-VQTTENVMTAVPLAYEVSRPGDVILL 423


>gi|146310084|ref|YP_001175158.1| UDP-N-acetylmuramate [Enterobacter sp. 638]
 gi|145316960|gb|ABP59107.1| UDP-N-acetylmuramate [Enterobacter sp. 638]
          Length = 457

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 95/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIYPENDINLKQTMAMGCWSEQELVGEQGHWHAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K     + L GE  ++N L+A      +G+  A   + L        R E  G  +
Sbjct: 263 LDGEKVGQVKWALVGEHNMHNGLMAIAAARHVGVTPADAADALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGC------GGDRDQGKRPIMGKI 405
            G  +Y D+AH   ++   L  +R    G  RI+ V          G       P +G+ 
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGLSKDDLAPSLGR- 380

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       I       +        I+     D ++V
Sbjct: 381 ----ADEVFLLQPQH---IPWQVAEVADACIQPAHWHADVDTLADMVIKTAQPGDHILV 432


>gi|260655412|ref|ZP_05860900.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
 gi|260629860|gb|EEX48054.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
          Length = 461

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
              L++  L + H V  R +  G       +Y DY H  N L+  L  +  +   R +VV
Sbjct: 292 SFDLMVSALNEFHGVKRRLQQKGNAGDDILVYDDYGHHPNELKATLTALGQMFPKRRLVV 351

Query: 388 FGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPG- 438
                   R         ++    AD  I+       E          I+ +I    PG 
Sbjct: 352 VFQPHRYTRTAALYEQFAQVLSQ-ADQVILLPIYAADEQQIPGVSSSLIQDKIHERHPGL 410

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                ++++A    + +L   D+L+ AG G
Sbjct: 411 CHLVRDKVDAEACVMSVLQPGDLLLTAGAG 440


>gi|168821169|ref|ZP_02833169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342272|gb|EDZ29036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088843|emb|CBY98601.1| putative ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 459

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 96/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P +       +   +K+    GC         +     K       +    
Sbjct: 203 QFHHLVRIVPGLGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVW 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|325265718|ref|ZP_08132407.1| tetrahydrofolate synthase/dihydrofolate synthase [Kingella
           denitrificans ATCC 33394]
 gi|324982849|gb|EGC18472.1| tetrahydrofolate synthase/dihydrofolate synthase [Kingella
           denitrificans ATCC 33394]
          Length = 458

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 108/375 (28%), Gaps = 29/375 (7%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---SPIYLAKAL 174
           + V GT+GK S  +F+ QI  ++G     +     +    +    T P     I  A   
Sbjct: 74  ITVGGTNGKGSTCAFLSQIYTQAGYKVGTLTSPHLLRFNERIAVNTQPVSDEAIVAAFER 133

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR--DHIDYHQTQQAYFNAKMR 232
              +    +    E ++       L     +      LG   D ++   T  A   +   
Sbjct: 134 IEAARGNTSLTYFEFNTLAAVDIFLREQVDVMILEVGLGGRLDAVNIFDTDCAVVTSVDL 193

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             +  L     A+ +      +              S+    + I    + A H+     
Sbjct: 194 DHQHYLGDTVEAVAFEKAGIFRTGKPAVCGQNPVPSSLQRHAEDIGAPLLWAKHDFSVSK 253

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAA-GLCIAIGIDSALVLEHLEKLHVVPGRF----- 346
           +  +  +F F               A     +  G         L  +  +  R      
Sbjct: 254 LDNQQWNFHFTPQNAALALPARNRNALPMPALRGGYQLNNAACALAAIECLHQRLPVDVG 313

Query: 347 ------------EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGD 393
                                    +D  H  ++   + +++  +    + I VF    D
Sbjct: 314 AVKRGLLMAENIGRFQVLPGRPLTVLDVGHNPHAARALRQSLIALPFAEKRIAVFSMLSD 373

Query: 394 RDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRT 451
           +D      + +I  D  D   +   D PR      ++ +   HGI       N   A  +
Sbjct: 374 KDIDG---VLEIVRDQFDEWYLAPLDVPRGMTLAALQQKCAAHGIDRIKTFENVQAACES 430

Query: 452 AIEMLNKQDVLVVAG 466
           A+ +  + D +VV G
Sbjct: 431 ALSVAGENDRIVVFG 445


>gi|323694570|ref|ZP_08108736.1| hypothetical protein HMPREF9475_03600 [Clostridium symbiosum
           WAL-14673]
 gi|323501338|gb|EGB17234.1| hypothetical protein HMPREF9475_03600 [Clostridium symbiosum
           WAL-14673]
          Length = 455

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 32/191 (16%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +++    P   E+Q  N+++A      +GI   ++   + +    PGR E +  +     
Sbjct: 258 REYRLDIPFAAEYQAVNSMLAFHTAELMGIGGDVICRGIGQAVW-PGRMEQIMKD----- 311

Query: 358 IYVDYAHTSNSLEMILKNIRTI---TSGRIIVVFGCGGDRDQGKRPIMGKIALD--LADI 412
           +Y+D AH    +    K  RTI     GR I+VF    D++      M +I     + D+
Sbjct: 312 VYLDGAHNEGGIREFAKAARTIAARHGGRKILVFAVVSDKEY---REMAEILCREFMPDV 368

Query: 413 AIVTD-----------------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
            I+T                  D   + D      +   G           EA++ A+  
Sbjct: 369 LILTQIEYGRGLAINELNQAAHDAWNAVDGRAGTRDNGSGHD-IRVIKTVEEALKEAVNE 427

Query: 456 LNKQDVLVVAG 466
              +D +  AG
Sbjct: 428 KKAEDTVFCAG 438


>gi|312871958|ref|ZP_07732040.1| bifunctional protein FolC [Lactobacillus iners LEAF 2062A-h1]
 gi|311092535|gb|EFQ50897.1| bifunctional protein FolC [Lactobacillus iners LEAF 2062A-h1]
          Length = 421

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 111/402 (27%), Gaps = 36/402 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + P +   N   ++      L     +     +TGT+GK S A ++ ++ Q++G S   
Sbjct: 11  EHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRLLQKTGQSIGL 70

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205
                      +      P    L  +        + ++  +     L        +   
Sbjct: 71  FVSPYVEVFNERIQINGQPISDELLISAYQAVKNAIRNIQKKYPEFNLVTFEFETAMAFW 130

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  N     I+     +      +     ++                ++         
Sbjct: 131 IFAKQNCDYAVIEVGIGGEHDKTNVIVPQVSIITTIGLDHEKVIGPTMFDIAHEKSGVIK 190

Query: 266 R-----------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +                 +     +   + L             +    K        P 
Sbjct: 191 KNRPVVLGNVPAKVLPLLMEKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFKLRPQ 250

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL            S   +E      ++P R++ V        I VD AH   +
Sbjct: 251 TEAYDIALALITFATLKFDISVSDIEDTINNTIIPARYQIVQKKPL---IMVDGAHNIQA 307

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDN-PRSED 424
           +  ++  +R I+ GRI ++ G   D+D  K        + L D       T  + PR+  
Sbjct: 308 VHELISYVRKISQGRIYILLGMMKDKDIAK-------VVKLFDPKEKITFTRISYPRAAT 360

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  ++   I       +   A       L + D+LVV G
Sbjct: 361 KSDIEEDLNCHIN---FIDDYRLAYDILKNKLTQDDILVVTG 399


>gi|206969921|ref|ZP_03230875.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH1134]
 gi|229071966|ref|ZP_04205176.1| Folyl-polyglutamate synthetase [Bacillus cereus F65185]
 gi|206735609|gb|EDZ52777.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH1134]
 gi|228711125|gb|EEL63090.1| Folyl-polyglutamate synthetase [Bacillus cereus F65185]
          Length = 433

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 103/387 (26%), Gaps = 47/387 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
             + + GT+GK S  ++++ + + +             S   + +   TP          
Sbjct: 42  KCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIESFNERISVNGTPIADEEITELV 101

Query: 168 --------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                                 +   ++      V    V     GL   R D   +I  
Sbjct: 102 KMVKPVVEKLDETDLGEATEFEIITVMAICYFGKVNFCDVVLFETGLG-GRFDSTNVIHP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY----SKEVMKRAHNA 263
             T +     D+                 ++    P I    D       + V K  H  
Sbjct: 161 VLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQVIQNVAKENHAN 220

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
              +            +           +   + +         G   +    V      
Sbjct: 221 LYELSKHFTALHKQSNEDGEQFDFTCPFSAFEDLQISMKGIHQVGNAALALMAVMYVKTY 280

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
              +     +          GRFE +        I +D AH    +E ++K +      +
Sbjct: 281 LSFLIEEEEIRTGLLEAYWIGRFEKL---QSNPDIIIDGAHNPEGIESLVKTVEAHYKDK 337

Query: 384 IIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG---F 439
            ++V F   GD+       M      +AD  I T           I A+ +         
Sbjct: 338 NVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISADKLASYSQKESK 390

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +   N  EAI T +E + + DV ++ G
Sbjct: 391 LVFENWKEAIDTKVEKIAENDVFIITG 417


>gi|237716649|ref|ZP_04547130.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D1]
 gi|262405424|ref|ZP_06081974.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_22]
 gi|294646205|ref|ZP_06723859.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CC
           2a]
 gi|294809128|ref|ZP_06767846.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229442632|gb|EEO48423.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. D1]
 gi|262356299|gb|EEZ05389.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 2_1_22]
 gi|292638423|gb|EFF56787.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CC
           2a]
 gi|294443682|gb|EFG12431.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 466

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 109/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQSHVECTAF-LGGISKNYGTNLLLSQTSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T+   DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMTV-------------------ITSTDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           N R      DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+D+L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEDIL 425


>gi|126667382|ref|ZP_01738354.1| folylpolyglutamate synthetase [Marinobacter sp. ELB17]
 gi|126628138|gb|EAZ98763.1| folylpolyglutamate synthetase [Marinobacter sp. ELB17]
          Length = 445

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 110/383 (28%), Gaps = 20/383 (5%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + + +      GK    I+ V GT+GK S  + ++ + Q +G  +             + 
Sbjct: 44  RVMVVLQRLFPGKPEARIITVAGTNGKGSTVAALEALLQEAGRRTAAYTSPHLQVYNERV 103

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFT--------- 210
             L                 +    VS+     G     +   +     +          
Sbjct: 104 RLLGEQISDAQMIYGFERVQEARAEVSLSYFEFGTLAAFVAMSEADVDDWILEVGLGGRL 163

Query: 211 ---NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+         +      + +    E +  E   ++               +   + 
Sbjct: 164 DAVNVLDADFVIFTSIDIDHASFLGNDRESIGFEKAGVLRPGIPAVYADFDPPRSVLQQA 223

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           LS       +         + Q   +++E  D +F  P         A            
Sbjct: 224 LSQEVDLTLLGRDYQLVQCSSQPAMVNLELGDEEFRLPDFALPVKSLAAAVVASRTLAPN 283

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRII 385
                +E       VPGRFE V T+     + +D  H  +          +      RI 
Sbjct: 284 LGVQQIERAVAGVSVPGRFEQVATSPL---VILDVGHNPHAACWLASRLRLLQHPETRIH 340

Query: 386 VVFGCGGDRD-QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKG 443
            V+G   D+D QG    M  +      +A +  + PR    E + A+    GI       
Sbjct: 341 AVYGALADKDVQGVAKAMASVVHSWY-LAGLLKEAPRGYSAEALNAQFEQCGIEPAGYWH 399

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +  EA+  A       D+++V G
Sbjct: 400 SVPEALAEARGQARANDIVIVFG 422


>gi|55376924|ref|YP_134775.1| dihydropteroate synthase [Haloarcula marismortui ATCC 43049]
 gi|55229649|gb|AAV45069.1| dihydropteroate synthase [Haloarcula marismortui ATCC 43049]
          Length = 799

 Score = 50.7 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PI 401
           PGRFE     S    + +D +H   ++E +   I       + VVF    D++  +    
Sbjct: 288 PGRFEV---RSTDPMVVLDGSHNPGAMETLTTLIGRYEYDDLHVVFAAMQDKEYEQMIAT 344

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +  +    A    V     R+   E + A          +  +  EA   AI    + D 
Sbjct: 345 LPAVETAFATRPAV----DRAASTESLAAAFEGQAAQIQQVESVPEATERAIATAGEDDF 400

Query: 462 LVVAG 466
           ++VAG
Sbjct: 401 VLVAG 405


>gi|183599659|ref|ZP_02961152.1| hypothetical protein PROSTU_03148 [Providencia stuartii ATCC 25827]
 gi|188021913|gb|EDU59953.1| hypothetical protein PROSTU_03148 [Providencia stuartii ATCC 25827]
          Length = 430

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/379 (13%), Positives = 107/379 (28%), Gaps = 37/379 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ V GT+GK +    ++ I   +GL          +    +     +       
Sbjct: 48  QPAPRVITVGGTNGKGTTCHTIESILMAAGLKVGVYSSPHLVRYTERVRIQGSELAESDF 107

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    +S+       +   L  + L   +  ++    +       A      
Sbjct: 108 CRAFAEIEQERGDISLTY----FEYGTLAALTLFKQASLDVVILEVGLGGRLDATNIVDA 163

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +                D       K     G R   VG          H + + A+  
Sbjct: 164 DVAAVTSIALDHTDWLGSDREHIGFEKAGIFRGGRYAVVGEPDMPQSIGQHAENIGALLF 223

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQ------------VYNALVAAGLCIAIGIDS-----A 330
           ++    S E +   + +                      AL        I          
Sbjct: 224 RRDKDWSFEQQQDCWAWQSRQCQWLNLPLPNVPLANAATALGVICCLKEIDSQLATKITD 283

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS---LEMILKNIRTITSGRIIVV 387
             +    +   +PGRF+ +G       + +D AH  ++   L   L  +  +   R+  V
Sbjct: 284 QAIHDGLRSAQLPGRFQIIGEKPL---MILDVAHNPHAAGYLINRLAQLPAVEGRRVRAV 340

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G  GD+D      +  ++  + D  +     P +E      +++   +       +  +
Sbjct: 341 VGMLGDKDIQGT--LTCLSEQVTDWYVA----PLTEFRGAPASQLSQYLDSPQVFDSVDD 394

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A + A       D++VV G
Sbjct: 395 AWQKACLDATDNDIIVVCG 413


>gi|145223576|ref|YP_001134254.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
 gi|189029001|sp|A4TBE7|MURC_MYCGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145216062|gb|ABP45466.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium gilvum
           PYR-GCK]
          Length = 475

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 92/469 (19%), Positives = 149/469 (31%), Gaps = 67/469 (14%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS- 88
           DSR +      +A+   G +   GH   P A+     G  A+V + A   +     + + 
Sbjct: 47  DSRGL------IALRARGAQVRIGHD--PSALDMLPGGPTAVVTTHAAIPKTNPELVEAR 98

Query: 89  --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF- 145
               P+++        ++ A  +  +     L VTGT GK+S  S +    Q  G     
Sbjct: 99  RRGIPVILRP------AVLARLMDDRTS---LLVTGTHGKTSTTSMIIVALQHCGFDPSF 149

Query: 146 -QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G      + A     +T                         +        L     
Sbjct: 150 AVGGDLGQAGTNAHHGSGSTF-----------------------VAEADESDGSLLEYSP 186

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+  DH+D++ T + Y  A    F + +      ++  DD  +  + +R    G
Sbjct: 187 DVAVVTNIEADHLDFYGTVENYT-AVFDQFVDRIKPVGALVVCVDDPGAAALAERTAALG 245

Query: 265 CRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            RVL  G                     ++++  E +       +PG     NAL A   
Sbjct: 246 IRVLRYGSAPGLDATLLDWSQLGTGAVAEISVRAEDRPRTMRLSVPGRHMALNALGALLA 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G D   VL+ L     V  RFE VGT   G R++ DYAH    +   +  +R +  
Sbjct: 306 ATQAGADIDAVLDGLAGFDGVRRRFELVGTAG-GVRVFDDYAHHPTEVRAAITALRAVAE 364

Query: 382 G----RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AEIIH 434
                R + VF      R +             AD   V D     E P      A I  
Sbjct: 365 QTPGARTVAVFQPHLYSRTETFATEFAASLST-ADEVFVLDVYAAREQPLPGVSGATIAD 423

Query: 435 GIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET--VHIVTNGEK 480
           G+        +          +++  DV+V  G G  T     +    +
Sbjct: 424 GVSAPVTYIADFSAVAARVAAVVSAGDVVVTMGAGDVTMLGQEILAEVR 472


>gi|150014999|ref|YP_001307253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           beijerinckii NCIMB 8052]
 gi|189082873|sp|A6LPL7|MURD_CLOB8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149901464|gb|ABR32297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 458

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 107/360 (29%), Gaps = 61/360 (16%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +  +TG+ GK++  + + ++ +  G  ++  G               TP    +     
Sbjct: 118 KVYGITGSDGKTTTTTIISKLLEGQGYKTWVGGNIG------------TPLFSEIENIHD 165

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    V +E SS  L        ++     TNL  +H+D H++ Q Y +AK  +F 
Sbjct: 166 EDK------VVLELSSFQL---MTMTQEIDVAVCTNLSPNHLDMHKSMQEYIDAKKNIFI 216

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                    +   ++     + +   N               +   +  + +K+      
Sbjct: 217 YQNSNGLLVVNRENEITHGFIKEAKGNVKEFSSKRELIDGAYYKNGILYLEDKEVCKKDD 276

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
                                +AA L     +   ++ +  E    V  R E V      
Sbjct: 277 IV---------IKGMHNVENYLAAFLATKDDVSVEVMKKVAETFAGVEHRCELVREIDGV 327

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-------------M 402
                  A +       L+          ++V   G D++    P+             M
Sbjct: 328 KYYNDSIASSPTRTLAGLRAFDE-----KVIVIAGGYDKNIPFEPLAYEGYPYIKELILM 382

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           G     + D+     DN  +E   KI               +  EA+R A  + N+ D++
Sbjct: 383 GATKHKIKDVF----DNLENEKGIKI---------NINMVESLEEAVRLAESIANQGDIV 429


>gi|325911665|ref|ZP_08174072.1| bifunctional protein FolC [Lactobacillus iners UPII 143-D]
 gi|325913045|ref|ZP_08175418.1| bifunctional protein FolC [Lactobacillus iners UPII 60-B]
 gi|325476431|gb|EGC79590.1| bifunctional protein FolC [Lactobacillus iners UPII 143-D]
 gi|325477725|gb|EGC80864.1| bifunctional protein FolC [Lactobacillus iners UPII 60-B]
          Length = 421

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 111/402 (27%), Gaps = 36/402 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + P +   N   ++      L     +     +TGT+GK S A ++ ++ Q++G S   
Sbjct: 11  EHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRLLQKTGQSIGL 70

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205
                      +      P    L  +        + ++  +     L        +   
Sbjct: 71  FVSPYVEMFNERIQINGQPISDELLISAYRAVKNAIRNIQKKYPEFNLVTFEFETAMAFW 130

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  N     I+     +      +     ++                ++         
Sbjct: 131 IFAKQNCDYAVIEVGIGGEHDKTNVIVPQASIITTIGLDHEKIIGPTMFDIAHEKSGVIK 190

Query: 266 R-----------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +                 +     +   + L             +    K        P 
Sbjct: 191 KNRPVVLGNVPAKVLPLLMEKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFKLRPQ 250

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL            S   +E      ++P R++ V        I VD AH   +
Sbjct: 251 AEAYDIALALITFATLKFDISVSDIEETINNTIIPARYQIVQKKPL---IMVDGAHNIQA 307

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDN-PRSED 424
           +  ++  +R I+ GRI ++ G   D+D  K        + L D       T  + PR+  
Sbjct: 308 VHELISYVRKISQGRIYILLGMMKDKDIAK-------VVKLFDPKEKITFTRISYPRAAT 360

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  ++   I       +   A       L + D+LVV G
Sbjct: 361 KSDIEEDLNCHIN---FIDDYRLAYDILKNKLTQDDILVVTG 399


>gi|309776032|ref|ZP_07671024.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916314|gb|EFP62062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 437

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 136/392 (34%), Gaps = 47/392 (11%)

Query: 75  SAYSLQDFSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             Y+    +  I+   P +   V++  K L+            +  A+TGT+GK+++ + 
Sbjct: 61  EGYAFVVKNPGIKYTVPFVRYFVEHKVKILTEVEIGYRYAKGFHYGAITGTNGKTTITTM 120

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           + ++ +     +   G      S                   +         V++E S+ 
Sbjct: 121 LYEMLK-YNKKAIVAGNIGWPLSEL-----------------ALKYEAEEKDVALELSNF 162

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L    ++          NL  DH+DY  + ++Y+ +KMR+++             DD +
Sbjct: 163 QLL--GIEHFAPSVSVVCNLAPDHLDYMPSVESYYESKMRIYKNCT---------KDDWF 211

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V         + +        +  + V        V +       +  F + G++ +
Sbjct: 212 LRNVDDATVLQYAQNIPCTVIDFSLTRQDVDLYRKDGAVYLRDILLFEEKSFHVVGDYNL 271

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA++AA +   +G+    + + +     V  R E++G  +         A  ++++   
Sbjct: 272 SNAMIAACMAYKLGVSVRDIQKAIASFQPVEHRLEYIGEKNGVKFYNDSKATNTHAVTAA 331

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L +  +      I++   G D+       + +    +       +  P+         EI
Sbjct: 332 LSSFES-----NIILLAGGHDKGISF-DDLRQYDARVKLCVAFGETGPQF-------QEI 378

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                         EA++ AI    +QD++++
Sbjct: 379 ---FSHVHVVETMQEALKEAIANSKEQDIILL 407


>gi|158321054|ref|YP_001513561.1| FolC bifunctional protein [Alkaliphilus oremlandii OhILAs]
 gi|158141253|gb|ABW19565.1| FolC bifunctional protein [Alkaliphilus oremlandii OhILAs]
          Length = 434

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 18/178 (10%)

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             K                 +V           S   + +        GRFE +G     
Sbjct: 250 NVKVQMVGIHQIYNACTALGVVEILRRYRDVSISKEAVFNGLYNAKWAGRFEVLGK---N 306

Query: 356 GRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ-----GKRPIMGKIALDL 409
             I +D AH  +    + K+I ++    +I +V G   D+D         P+M K+    
Sbjct: 307 PWIIIDGAHNLHGAIALRKSIESLLKDYKITLVVGMLQDKDVQGVLEDLIPLMSKVVA-- 364

Query: 410 ADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 T+ N PR+    ++  ++           +  EAI+ + ++ ++++V++ AG
Sbjct: 365 ------TEPNNPRAMKASELAEKLKVFNKETHICESIQEAIKRSKDITSEEEVIIFAG 416


>gi|197334019|ref|YP_002155024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri MJ11]
 gi|197315509|gb|ACH64956.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri MJ11]
          Length = 447

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 106/359 (29%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 89  QDRWVLAVAGTHGKTTTSSMLAWVLEECGYKPGFLVGGVLGNFGESARLGESMFFVVEAD 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                 +       NL  DH D          A +
Sbjct: 149 EYDSAFFDKRSKFV---------------HYRPRTLVLNNLEFDHADIFDDL-----AAI 188

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     L +  P+          + +++    GC                       Q  
Sbjct: 189 QRQFHHLIRTVPSTGRIFAPKQDKPLEQVLEQGCWSELEFTGEDGQWKAIKLQKDGSQFD 248

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K     + L G+  V NAL+       +G+   L  E L K      R E  G 
Sbjct: 249 VYFEGEKVGQVNWDLVGDHNVSNALMVVASARHVGVTPDLACEALGKFINTKRRLELKG- 307

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCG-GDRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++++ L  +R  +   +II V          G        +L  
Sbjct: 308 EVNGVTVYDDFAHHPTAIDLTLNGLRNKVGDKKIIAVLEPRSSTMKLGVHKDTLAASLHA 367

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
           AD   +         P+ I     ++           N I+A +   +      D ++V
Sbjct: 368 ADSVYLYQ-------PDNIAWSVDDVAQQCTQPAHTHNNIDAFVDMIVNEAQPGDQILV 419


>gi|167549628|ref|ZP_02343387.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325340|gb|EDZ13179.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 422

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 117/391 (29%), Gaps = 43/391 (10%)

Query: 99  RKFLSLFASRLYGKHPENIL-AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +S  A+RL    P   +  V GT+GK +    ++ +   +G           +    
Sbjct: 32  LERVSQVAARLDILKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTE 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +           LA++    S   +     + S    +   L  + L   +  ++    +
Sbjct: 92  RVRVQGK----ELAESAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEV 147

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A       +                D  S    K       +   VG      
Sbjct: 148 GLGGRLDATNIVDADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPA 207

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPL--------------PGEFQVYNALVAAGLCI 323
            +  V            V+ +                      P   Q   A   A L  
Sbjct: 208 TIADVAQETGALLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRA 267

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SG 382
           +        +        +PGRF+ V  + R   +  D AH  ++ E +   ++ +   G
Sbjct: 268 SGLNIDEQAIRDGIAQATLPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRLKMLPKRG 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHG 435
           R++ V G   D+D         IA  LA +  V DD        PR    E++   +  G
Sbjct: 325 RVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKG 375

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   + ++A + AI+    +D ++V G
Sbjct: 376 N----VYDSVVQAWQAAIDAAQPEDTVLVCG 402


>gi|78044302|ref|YP_359198.1| folylpolyglutamate synthase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996417|gb|ABB15316.1| folylpolyglutamate synthase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 432

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 15/131 (11%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRP 400
             GRFE          + +D AH  + +  + +       G + +++ G   D+++ K  
Sbjct: 294 WSGRFE---YIPGNPPVLLDGAHNHDGVRALRQAFTDYFPGVKPVLLLGVLADKEREK-- 348

Query: 401 IMGKIALDLADI---AIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               +  +L D+    +VT    PR+ D   +                  EA+   +E+ 
Sbjct: 349 ----VVAELLDLPLEVVVTRPPTPRAGDITVLARLFKEKGVRVKVIEEPTEALSYGLEIA 404

Query: 457 NK-QDVLVVAG 466
            + Q +L++ G
Sbjct: 405 QEYQTLLLITG 415


>gi|237729386|ref|ZP_04559867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
 gi|226909115|gb|EEH95033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
          Length = 438

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 138/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDEREL--------------------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGINMGDYH-------LNRQQGETWLRVKGEKVLNVKEMTLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVLNHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G +     P+             +T DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-KSADFMPL----------QRYLTGDNIRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E      +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEHTETMEQAMRLLAPRVKPGDMVLL 410


>gi|209921729|ref|YP_002295813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE11]
 gi|209914988|dbj|BAG80062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE11]
          Length = 457

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---THIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPSDHILV 432


>gi|313156845|gb|EFR56285.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Alistipes sp.
           HGB5]
          Length = 449

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 58/362 (16%), Positives = 114/362 (31%), Gaps = 35/362 (9%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R  G+     + +TG++GK++  S + +I + +G+     G      +++      
Sbjct: 94  EFAGRYTGR--AKCICITGSNGKTTTTSLIYKIMRDAGMRVALGGNIGESFAYSV----- 146

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                         ++       +E SS  LD   +   +   G   N+  DH+D +   
Sbjct: 147 --------------ATGDYDWYVLELSSFQLD--GMYKFRAHIGVLMNITPDHLDRYDHC 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +        +   DD    + + +      ++                
Sbjct: 191 FQNYADSKMRITQNQTSRDYFVYSGDDEVIWQQLPKYDLRMKQLPFAAKNAVASGAGDAF 250

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGE-FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               K    +     + D            YNA+ AA   +A GI  A +   L     V
Sbjct: 251 LCDCKFTAAVGKASVEIDTAKLQIKGLHNAYNAMAAALATLAAGIAPAAIRRSLYGFAPV 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R E V  +     I    A   +S+   L++++     R +V    G D+     P+ 
Sbjct: 311 EHRLEPVRESGGVLWINDSKATNVDSVYYALESMK-----RPVVWIAGGTDKGNDYGPLK 365

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                 +  +  +  DN       K+  E    +P  I   +   A+  A       D +
Sbjct: 366 DFAREKVHTLVCMGIDN------AKLLREFTGVVPEVISTDSLDAAMTAAKAAARPGDAV 419

Query: 463 VV 464
           ++
Sbjct: 420 LL 421


>gi|298480579|ref|ZP_06998776.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. D22]
 gi|298273400|gb|EFI14964.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. D22]
          Length = 466

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 108/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQSHVECTAF-LGGISKNYGTNLLLSQTSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T+   DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMTV-------------------ITSTDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G     +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGATDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           N R      DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+D+L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEDIL 425


>gi|190149288|ref|YP_001967813.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262601|ref|ZP_07544231.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470255|sp|B3GZK9|MURC_ACTP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189914419|gb|ACE60671.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872024|gb|EFN03738.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 475

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 129/418 (30%), Gaps = 48/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V SSA    +    A   +  P++      + L+      +G      +AV GT
Sbjct: 76  AGASVVVASSAIDDSNPEVRAAKEARIPVIQRA---QMLAEIMRFRHG------IAVAGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I       +                +           A +  S     
Sbjct: 127 HGKTTTTAMISMIYTE----AKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFL 182

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+    S                   TN+  DH+D +        A    F   LP    
Sbjct: 183 HLQPMVS-----------------VVTNIEPDHMDTYGGDFEQMKATYVKFLRNLPFYGL 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD    E+  +                   ++       +   T+     +   +
Sbjct: 226 AVMCADDETVMEIAPQVGRQVLTYGFSEKADY--RIEDYQQTGFQGHYTVVCPNGERIDV 283

Query: 304 F-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
              +PG+    NA  A  +    GI +  +L  L        RF+ +G+  R      + 
Sbjct: 284 LLNVPGKHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLV 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD 417
            DY H    +++ +K  R+    + +V+        + +       ++     D  I+ +
Sbjct: 344 DDYGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQ-VDALIMLE 402

Query: 418 DNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E P      + +   I + G    I   +  +      +++   D+++  G G
Sbjct: 403 VYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|113461392|ref|YP_719461.1| UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-medo-
           diaminopimelate [Haemophilus somnus 129PT]
 gi|112823435|gb|ABI25524.1| UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-medo-
           diaminopimelate [Haemophilus somnus 129PT]
          Length = 458

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 75/248 (30%), Gaps = 8/248 (3%)

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H        A  R F  ++     +      A+ + V K   + GC              
Sbjct: 193 HADIFDNLQAIQRQFHHMIRTMPKSGRILAFAHEQSV-KETLDMGCWSEMHFLGQDQEWH 251

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
            +  A  +          K  +  + + G+  + NAL+A      +G+      + L   
Sbjct: 252 TERIAHDSSHFAVYHQGKKAGEVQWNIVGQHNMNNALMAIAAAYHVGVQVKDACQALYSF 311

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQ- 396
                R E  G    G  +Y D+AH    +   L  +R    G  RI+ V     +  + 
Sbjct: 312 VNAKRRLEVKG-EVNGVTVYDDFAHHPAEILATLTALRDKVGGGARILAVLEPRSNTMKM 370

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           G        AL  AD   +        +  +I  + +          N    +   +   
Sbjct: 371 GIHKDEIAPALARADYVFLLQPENIPWNVVEIANDCVQPAKWSGNLDNL---VDLIVTEA 427

Query: 457 NKQDVLVV 464
             +D ++V
Sbjct: 428 QPEDHILV 435


>gi|159027413|emb|CAO86897.1| murD [Microcystis aeruginosa PCC 7806]
          Length = 449

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 132/397 (33%), Gaps = 41/397 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            S   +L   S  +  + PIL+   +   + +               L +TGT+GK++  
Sbjct: 62  ASDLPNLIVVSPGVPWDAPILITAREKGIETIGELELAWRYLQSSPWLGITGTNGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    I Q++GL++   G     +                      L +     +  E S
Sbjct: 122 ALCAAIFQKAGLNAPSCGNIGYAACEL------------------ALKADKYDWIIAEIS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++  R   +    G +T    DH+  HQT + Y+  K  L    L +    I+  DD
Sbjct: 164 SYQIESSR--DLAPKIGIWTTFTPDHLSRHQTLENYYQIKASL----LQRSDRQILNGDD 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y +++              G +       +   + +   V         +    + G  
Sbjct: 218 PYLRQIGVSQWQQAYWTSVQGKEALLGDPSRGVYLQDNWIVAFGELIAPVNL-LKMVGSH 276

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L+A       GI+   + E +     V  R E++ T      I    A   ++  
Sbjct: 277 NQQNLLMAVAAARLAGIEKKAITEAIATFPGVAHRLEYICTYKGLDFINDSKATNYDAAA 336

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + L+++ +       ++   G  +    R  + +I   +A + ++       +       
Sbjct: 337 VGLQSVPS-----PAILIAGGEAKAGDDRAWIAEIKAKVATVLLI------GDAAADFAR 385

Query: 431 EII-HGIPGFIEKGNRIEAIRTAIE--MLNKQDVLVV 464
            +   G   +        A++ A E  +  +  V+++
Sbjct: 386 RLQSAGYQDYECVETMDRAVQRAAELGLAKEAKVVLL 422


>gi|125624154|ref|YP_001032637.1| FolC protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|24935316|gb|AAN64309.1| FolC protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492962|emb|CAL97925.1| FolC protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070930|gb|ADJ60330.1| FolC protein [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 427

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 80/217 (36%), Gaps = 13/217 (5%)

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +            +     ++ +  +     ++     + +    D    L G  QV NA
Sbjct: 202 LKALRVIWEVARKNTARIYQYPYDYRTELKEHEHFDFFAGQEAILDLEKSLIGLHQVENA 261

Query: 316 LVAAGLCIAIGID-----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            +A  L +          +  ++    +    P R E +G       I +D AH  +++ 
Sbjct: 262 GMAIELALVYANKVGINLNEEIIRAGIREAFWPARMEKLGE---NPLILLDGAHNVHAMN 318

Query: 371 MILKNI-RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +L+N+ +     +I ++F     +D  +   M +     + + + T D P++ D +  R
Sbjct: 319 RLLENLGKEFPDKKITIIFSAITTKDIRQMIKMLQTV-KNSRLILTTFDYPKALDLKDFR 377

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                G        +   AI  A + L++ ++L++ G
Sbjct: 378 YLEDEG---VELAPSWELAIVRAQKALDEDELLLITG 411


>gi|261254015|ref|ZP_05946588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
 gi|260937406|gb|EEX93395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
          Length = 451

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 108/357 (30%), Gaps = 31/357 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             ++     GC   +     +     +       +  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDIALEDVLQRGCWSETEFTGQQANWRAEKLIADGSEFK 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               + +     + L G+  V NAL+A G    +G+   L  E L K      R E  G 
Sbjct: 261 VFFQDEEVGIVKWDLVGDHNVDNALMAIGAARHVGVTPDLACESLAKFINTKRRLELKGQ 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGC---GGDRDQGKRPIMGKIAL 407
              G  +Y D+AH   ++E+ L  +R  + S  II V         R   K  +   +A 
Sbjct: 321 -VNGVTVYDDFAHHPTAIELTLGGLRNKVGSDNIIAVLEPRSATMKRGVHKDALAASLA- 378

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             AD   +   +      + I ++            +  E +   +        ++V
Sbjct: 379 -KADQVFLYQPDSIDWSVKDIASQ---CHQPADTSADVDELVAKIVSHAQAGSHILV 431


>gi|237744449|ref|ZP_04574930.1| folylpolyglutamate synthase [Fusobacterium sp. 7_1]
 gi|229431678|gb|EEO41890.1| folylpolyglutamate synthase [Fusobacterium sp. 7_1]
          Length = 415

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 114/360 (31%), Gaps = 25/360 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQDNRLTTPS-- 166
           ++   ++ +TGT+GK SV++ V++I   +G    +             + +++  +    
Sbjct: 40  QNSYKVIHITGTNGKGSVSTTVERILLEAGYKVGKYTSPHILEFNERISFNDKYISNEDV 99

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I      +         +         D   L+         TN+  D+I
Sbjct: 100 AKYYEKVKKIIDEHNIQATFFEVTTAMMFDYFKDMKADYVILEAGMGGRYDATNIC-DNI 158

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               T  +  + +          +  A I  +  Y+               +       +
Sbjct: 159 VSVITNVSLEHTEYLGDTIYKIAKEKAGIIKNCPYTIFADNNPDVKKAIEEATDKYVNVL 218

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K    +       +    + +           Y   + A   +        +++   
Sbjct: 219 EKYKNSTYNLDFNTFSTNIFINGNKYEYSLFGDYQYKNFLCAYEVVKYLGIDENIIKEAV 278

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQ 396
           K  V   RFE     S+   +  D AH    +E + K ++   S   ++V      D+D 
Sbjct: 279 KKVVWQCRFEVY---SKNPLVIFDGAHNLAGVEELTKIVKQHFSKDEVIVLVSILKDKD- 334

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             R  M +   +++   I+T   DNPR+   +++  + +     F  + + I+A   A+ 
Sbjct: 335 --RVSMFRKLNEISSCIILTSIPDNPRASTAKELY-DYVENKKDFEYEEDPIKAYNLALS 391


>gi|114330911|ref|YP_747133.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307925|gb|ABI59168.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 617

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 115/356 (32%), Gaps = 24/356 (6%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            + +TG++GK++       I       +      + +       + T    + +      
Sbjct: 35  FIGITGSAGKTTTKDLCYLILSGFYPVAQSYKSLNVV-------KATADFVLEVESKHR- 86

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                 + + +  +  G     L  +K      TN+ +DH    + +     A+ +    
Sbjct: 87  -----FSIIEMSGNRPGALDLPLWLVKPEIAVLTNIEKDHFRAFKGESVDGIAREKAKLI 141

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
               E+   +   D    +V+     A    +          L    +      +TI  E
Sbjct: 142 EALSENGTAVLNMDDPRVKVIGERCKAKVIWVGKSKGATLRLLNATSSYPQPLTLTIKYE 201

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           G   + +  L G +   + L A G+ +A GI     +  L     V GR + V       
Sbjct: 202 GITHEVITGLHGTYLATSVLCALGVALAAGIRLDQAIPRLALAVPVEGRMQPVVMGDGVT 261

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADI 412
            I  D    + SL M+L  +   T+ R I V G      GDR   K     +  L  AD+
Sbjct: 262 FIRDDMKAPAWSLPMVLDFLSEATAVRKIAVVGSISDFSGDRS-DKYKQFARQVLQHADM 320

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            I   DN        +RA                EA     + L   D++++  KG
Sbjct: 321 VIFVGDNAH----RALRARKDENDSALQGFLTLKEASSFLQKTLRPGDLVLL--KG 370


>gi|313158276|gb|EFR57678.1| UDP-N-acetylmuramate--L-alanine ligase [Alistipes sp. HGB5]
          Length = 460

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 90/274 (32%), Gaps = 10/274 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMKR 259
           +       T+   DH+D + T +A   A  +   ++ P     I    D    + ++   
Sbjct: 175 LYPDVAVITSADADHLDIYGTHEAVKEAFSQFVRQIRPGGFLIIKEGVDIVLDNPQITVY 234

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
            ++            + +               +            +        ++  A
Sbjct: 235 RYSYDVPCDFYARNVQLLEGGHYRYDIVTPGGVVEGCTLGIPGWVNIENSVAAAASVWCA 294

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                  +D+  + E L     V  RFEF   N+       DYAH    L   L ++R +
Sbjct: 295 AQAEGTTLDAERLREALASFAGVKRRFEFY-VNTPKQVYMDDYAHHPRELAATLTSVRKM 353

Query: 380 TSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEIIH-G 435
             GR I          R +       + AL  AD  ++    P  E+P E + +EII  G
Sbjct: 354 FPGRRITALFQPHLYTRTRDLYREFAE-ALSHADDVVLLPIYPAREEPIEGVTSEIIAQG 412

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +        R  A+   +  ++  DV+V  G G+
Sbjct: 413 VTVPCRIVERA-ALADTVAAMDT-DVVVSFGAGN 444


>gi|269127138|ref|YP_003300508.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
 gi|268312096|gb|ACY98470.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
          Length = 469

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 117/372 (31%), Gaps = 45/372 (12%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+   SR  G      LA+TGT+GK++    +  I + +G  +  +G   T    A  + 
Sbjct: 100 LAWRLSREDGGRAAPWLALTGTNGKTTTVRMLACILRAAGHRAPAVGNVGTPIVEAALDP 159

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 + L                   SS+ L       +   AG+  N+  DH+D+H 
Sbjct: 160 SCDVLAVEL-------------------SSYQLHWS--SSLAPEAGAVLNVAPDHLDWHG 198

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           + +    A      ++    + A+  ADD  S  +   A  A    L +   G+   ++ 
Sbjct: 199 SLE----AYAADKGKIYAPGTVAVFNADDEISTRLAAGAERAVGFTLGIPAPGQLGVVED 254

Query: 282 VCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +               +              V NAL AA L  A G+    V E L    
Sbjct: 255 LLVDRAFTGDPRREAAELAQLSDVRPFAPHNVANALAAAALARAHGVPPQAVAEGLRAFV 314

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             P R   V T +    I    A   ++    L    +       V    G  +      
Sbjct: 315 PDPHRIAHVATVNGVDYIDDSKATNPHAAAASLAACES------AVWIAGGLLKGADVTE 368

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--IEKGN-----RIEAIRTAI 453
           ++   A  L    ++        D  KI   +    P    ++  +         +  A 
Sbjct: 369 LVRSCAPRLRAAVLI------GADRAKIAEALARHAPEVPVVDIPDTHTGTMDIVVAEAA 422

Query: 454 EMLNKQDVLVVA 465
            +    D +++A
Sbjct: 423 RLARPGDTVLLA 434


>gi|307132698|ref|YP_003884714.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Dickeya dadantii 3937]
 gi|306530227|gb|ADN00158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Dickeya dadantii 3937]
          Length = 460

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 107/362 (29%), Gaps = 44/362 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++A+ GT GK++ A  V  I +  G     +       +F    RL       +    
Sbjct: 103 RWVIAIAGTHGKTTTAGMVTWILEDCGYQPGFV-IGGVPGNFTVSARLGESPFFVVEADE 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +        V  S   L  +             NL  DH D     +A         
Sbjct: 162 YDCAFFDKRSKFVHYSPRTLILN-------------NLEFDHADIFDDLKAIQ-----KQ 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L +  P             +K+    GC         + I   K             
Sbjct: 204 FHHLVRLVPGKGRIIVPSHDLHLKQVMGMGCWSEQELVGEEGIWKAKKVTTDASVFQVYL 263

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    +  + L GE  ++N L+A      +G+  A     L        R E  GT   
Sbjct: 264 NDQLVGEVSWNLVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINARRRLELRGTA-H 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------KIA 406
           G  +Y D+AH   ++   L  +R+   G  RI+ V        +     MG        A
Sbjct: 323 GVSVYDDFAHHPTAILATLAALRSKVGGTARILAVLEP-----RSNTMKMGHCKNELAPA 377

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVL 462
           L  AD   +         P+ I  ++       ++       I T +EM        D +
Sbjct: 378 LGRADGVFLFQ-------PQHIPWQVAEVADACVQPAYWSADIDTLVEMISKTAQPGDHI 430

Query: 463 VV 464
           +V
Sbjct: 431 LV 432


>gi|283850516|ref|ZP_06367804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
 gi|283574087|gb|EFC22059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
          Length = 442

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 67/399 (16%), Positives = 113/399 (28%), Gaps = 69/399 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V+S        +  + +     VV          AS    +    I+AVTG++G
Sbjct: 74  AGADLVVLSPGIRAASLTDCLAACPGAQVVSEL-----ELASWFTAEP---IVAVTGSNG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  + + +G   F  G               TP           L+      V
Sbjct: 126 KTTTVMLISHLLEAAGRKVFTGGNIG------------TPLS------EYVLAGDPADVV 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L   R    +   G   N   +H+D+H     Y +AK+ LF+          
Sbjct: 168 VLEVSSFQLQLVRTF--RPRVGVLLNFSPNHLDWHADLDEYLDAKLNLFK---------- 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                       +R  +       +        L K   +                    
Sbjct: 216 -----------AQRPGDLALVPEELRETLAGRTLSKGEVVWFAPSGRFHCP--------R 256

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     N   A   C   G+         E     P R + +G       +    A T
Sbjct: 257 LAGLHNRQNMEAAYLACQPFGVTEETAKAAFESFAPAPHRLQIIGEKRGVLFVDDSKATT 316

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             ++E  LK+           V+  GGD       + GK+A                   
Sbjct: 317 VAAMEAALKSFDRPVRLLCGGVWK-GGDLAALLPLLKGKVASVG-----------LFGAS 364

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +I      G      +  +  A+          DV+++
Sbjct: 365 REIFEAAWAGQVPLFYEPTQKAAVTRLFAEAVPGDVILL 403


>gi|297571140|ref|YP_003696914.1| FolC bifunctional protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296931487|gb|ADH92295.1| FolC bifunctional protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 505

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 9/118 (7%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E V ++     I VD AH     ++  + +     G  + VF    D+D     I+
Sbjct: 356 PGRLEVVKSSPL---IIVDAAHNPAGAKVTREGLEEYFPGPRVAVFSAMADKDVEG--IL 410

Query: 403 GKIALDLADIAIVTDDNPRS---EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
            ++    A I +      R+   ED ++I  +I  G      +   ++AI  A++M  
Sbjct: 411 TELEPAFAGIVVTEMPGDRAMDIEDLQEIATDIF-GEDRVRVETELLDAIAVAVDMAE 467


>gi|57866690|ref|YP_188331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis RP62A]
 gi|62900660|sp|Q5HQ09|MURD_STAEQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|57637348|gb|AAW54136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis RP62A]
          Length = 449

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 120/355 (33%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S                   
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 154 -AQEVKSDEYLITELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +           Q       K   I       I+
Sbjct: 211 KNQTKDDYLICNY----HQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L       N L A    I  G+    +++ L     +  R +++GTN  
Sbjct: 267 TKDLVLPGEHNL------ENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +         I+    G DR                D  I
Sbjct: 321 NKYYNDSKATNTLATQFALNSFDQ-----PIIWLCGGLDRGNEF------------DELI 363

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  +K            I+  +  +A+    +++   DV+++
Sbjct: 364 PYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|27467776|ref|NP_764413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis ATCC 12228]
 gi|282876386|ref|ZP_06285253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|30316001|sp|Q8CSX6|MURD_STAES RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27315320|gb|AAO04455.1|AE016746_245 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis ATCC 12228]
 gi|281295411|gb|EFA87938.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|329736177|gb|EGG72449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU028]
          Length = 449

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 120/355 (33%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S                   
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 154 -AQEVKSDEYLITELSSFQLL--GIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +           Q       K   I       I+
Sbjct: 211 KNQTKDDYLICNY----HQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L       N L A    I  G+    +++ L     +  R +++GTN  
Sbjct: 267 TKDLVLPGEHNL------ENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +         I+    G DR                D  I
Sbjct: 321 NKYYNDSKATNTLATQFALNSFDQ-----PIIWLCGGLDRGNEF------------DELI 363

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  +K            I+  +  +A+    +++   DV+++
Sbjct: 364 PYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|325264801|ref|ZP_08131530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
 gi|324030093|gb|EGB91379.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
          Length = 453

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N+  DH++ H T +AY +AK+ + E    +++  + Y
Sbjct: 166 EMSSFQLES--IHTFRPKVSAILNVSPDHLNRHHTMEAYIDAKLNIAENQTEEDTCVLNY 223

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  ++   ++ +       S     K I+++    I    +  + V          L 
Sbjct: 224 -EDEMTRGFAEKVNAKVLYFSSQRKLEKGIYMEDGNIICRMDETPVKVCH---IDELKLL 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + AAG+  A G+   ++   +++   V  R EFV                 +
Sbjct: 280 GTHNHENVMAAAGMAAAYGVPMEIIQRTVKEFQGVEHRIEFVAEKDGVAYYNDSKGTNPD 339

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++ ++     R  ++ G G D++      +      +  + ++          EK
Sbjct: 340 AAIKGIQAMK-----RPTLLIGGGYDKESSYDEWIQAFDGKVKKLVLL------GATKEK 388

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I+      G    I      EA+ T ++     D +++
Sbjct: 389 IKETAERLGFRDIILTDTFEEAVDTCVKYARPGDAVLL 426


>gi|229081722|ref|ZP_04214215.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock4-2]
 gi|228701567|gb|EEL54060.1| Folyl-polyglutamate synthetase [Bacillus cereus Rock4-2]
          Length = 433

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 55/398 (13%), Positives = 105/398 (26%), Gaps = 47/398 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     +     + + GT+GK S  ++++ + + +             +   + +   T
Sbjct: 31  LAELGNPERHIKCVHLAGTNGKGSTLTYMRYMLEGAKYKVGTFTSPYIETFNERISVNGT 90

Query: 165 PSP----------------------------IYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           P                                +   ++      V    V     GL  
Sbjct: 91  PIADEEITELVKMVKPVVEKLDETDLGEATEFEIITVMAIYYFGKVNFCDVVLFETGLG- 149

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY---- 252
            R D   +I    T +     D+                 ++    P I    D      
Sbjct: 150 GRFDSTNVIHPVLTIITNIGHDHMHILGNTLGEIAYEKAGIIKSGVPVITGVQDEEALQV 209

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
            + V K  H     +            +           +   + +         G   +
Sbjct: 210 IQNVAKENHANLYELSKHFTALHKQSNEDGEQFDFTCPFSAFEDLQISMKGIHQVGNAAL 269

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
               V         +     +          GRFE +        I +D AH    +E +
Sbjct: 270 ALMAVMYVKTYLSFLIEEEEIRTGLLEAYWIGRFEKL---QSNPDIIIDGAHNPEGIESL 326

Query: 373 LKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +K +      + ++V F   GD+       M      +AD  I T           I A+
Sbjct: 327 VKTVEAHYKDKNVIVLFTALGDKQLHN---MVGQLETIADEIIFTT----FAFDRAISAD 379

Query: 432 IIHGIPG---FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +         +   N  EAI T +E + + DV ++ G
Sbjct: 380 KLASYSQKESKLVFENWKEAIDTKVEKIAENDVFIITG 417


>gi|78188427|ref|YP_378765.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170626|gb|ABB27722.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
          Length = 494

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 131/414 (31%), Gaps = 43/414 (10%)

Query: 70  AIVVSSAYS--LQDFSATIRSNTPILVVDN-TRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A+VV +A S    +    +  +  +L + +  R+ L   A+          + V GT GK
Sbjct: 89  AVVVGNAISRGNPELEYALEQHLELLAMPDLVRRHL--IAN-------NTSVVVAGTHGK 139

Query: 127 SSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           ++  S V  + +  G    F IG                P    L    S     G    
Sbjct: 140 TTTTSLVAWMLEAGGLQPGFLIG--------------GIPENFGLGCRPSAGEGAGFFVT 185

Query: 186 SVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
             +         R   +          N+  DH D   + +    +  RLF  L+P+   
Sbjct: 186 EGDEYDTAFFDKRSKFLLYRPDIAIINNVEFDHADIFNSLEDIKRS-FRLFVNLIPRNGL 244

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++  DD  + E  ++A     R        ++                +        F 
Sbjct: 245 LLVNGDDPVALECAEKAFCPVERFALHAN-AEWSATNIHSEEEGSSFELLHHGKSVGTFH 303

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            PL G + + NA+ A       G+    + + L        R E +G  + G  +  D+A
Sbjct: 304 VPLFGNYNIMNAIAALAAAYRCGVSFEALADGLPHFQRPKRRMELLGEFADGITLIEDFA 363

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRS 422
           H   ++ + L+ I    +GR IV           +     ++A   A    +V     R 
Sbjct: 364 HHPTAIRVTLEAIAQRYNGRRIVACFEPRSNTTTRNIFQEELASCFAPASVVVLGKVHRP 423

Query: 423 E-------DPEKIRAEIIHGIPGFIEKGN----RIEAIRTAIEMLNKQDVLVVA 465
           E       +   ++ ++          GN      + IR         DV+V+ 
Sbjct: 424 ERYGDHALNTALLQEQLQSAGKEVFLAGNDADYPADIIRYLEAHRRHGDVVVLL 477


>gi|153948046|ref|YP_001402574.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pseudotuberculosis IP 31758]
 gi|152959541|gb|ABS47002.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pseudotuberculosis IP 31758]
          Length = 461

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 100/355 (28%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRPLIMN-------------NLEFDHADIFDDIKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  +        
Sbjct: 202 KQFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 LLDNNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P ++       I       +  + +   ++     D ++V
Sbjct: 381 ADEVFLFQPQH---IPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILV 432


>gi|260910909|ref|ZP_05917551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
 gi|260634966|gb|EEX53014.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella sp.
           oral taxon 472 str. F0295]
          Length = 443

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 115/362 (31%), Gaps = 40/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G +    G               
Sbjct: 94  EFAGRYTD---AKMVCITGSNGKTTTTSLIYHIFKTAGYNVGLGGNIGR----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L       +        +E SS  L+       K       N+  DH+D +  +
Sbjct: 140 ---SLALQV-----AEGAHDWYVIELSSFQLEDMYRF--KAHIAVLLNITPDHLDRYNYR 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        + L  +   I + DD   K  +++   +             +      
Sbjct: 190 MQGYVDAKMRILQNLTPQDYFIYWGDDPVVKPELQKYDVSAHVCPFAENSETGMSAYVAD 249

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                       +         LPG+  +YN+L AA    A GI  ++V + L     V 
Sbjct: 250 GQVTLPAPL---DFTMPQDRLSLPGKHNLYNSLAAALAARAAGIPQSVVEQGLSDFPGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E V T      I    A   ++    L+           ++   G D+     PI  
Sbjct: 307 HRMERVATMHGVNYINDSKATNVDACRYALEA-----MNTPTILIIGGKDKGNDYEPIKE 361

Query: 404 KIALDLADIAIVTDDNPR-SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            +    A +  +  DN +  ++ +++      G+P   +  +  + +     M      +
Sbjct: 362 LVKEKCAGLVYLGADNTKLHQNFDQL------GLP-VADTHSMKDCVMVCANMAKTGYTV 414

Query: 463 VV 464
           ++
Sbjct: 415 LL 416


>gi|300309676|ref|YP_003773768.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Herbaspirillum
           seropedicae SmR1]
 gi|300072461|gb|ADJ61860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 710

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 96/307 (31%), Gaps = 27/307 (8%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS  L  H    ++  A +  NL +DH+D+H + + Y   K R+F +
Sbjct: 376 YRGSMPQAWVLELSSFQL--HTTHSLQADAATVLNLTQDHLDWHGSMEHYAADKARIFGQ 433

Query: 237 L----------LPKESPAIIYADD---------AYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                      L  +  A   A             S  ++            V    +  
Sbjct: 434 HTVRVLNRDDALVMQMAAAGSALSTFGLDEPTAPNSFGLVNDNGMLWLANAFVHEDDEVP 493

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             K+     +     ++++         + G     NAL A  LC AI +  A +L  L 
Sbjct: 494 EGKRRRKQKDMLPPPVTLKRLMPADALKIRGAHNAMNALAALALCRAIDLPMAPLLHGLR 553

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                P R E VG                 +    L  +        IV+   G  + Q 
Sbjct: 554 DYTGEPHRVELVGVIQEVDYYDDSKGTNVGATVAALNGLGLGGRPNRIVLIAGGDGKGQD 613

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             P+   +    A   ++        D   IRA +       I+  +   A+  A E+  
Sbjct: 614 FSPLDLPV-QKYARAVLLI-----GRDAPAIRAALADSGVELIDCASLEAAVEKAGEIAT 667

Query: 458 KQDVLVV 464
             D++++
Sbjct: 668 AGDIVLL 674


>gi|298375356|ref|ZP_06985313.1| tetrahydrofolate synthase [Bacteroides sp. 3_1_19]
 gi|301310629|ref|ZP_07216568.1| tetrahydrofolate synthase [Bacteroides sp. 20_3]
 gi|298267856|gb|EFI09512.1| tetrahydrofolate synthase [Bacteroides sp. 3_1_19]
 gi|300832203|gb|EFK62834.1| tetrahydrofolate synthase [Bacteroides sp. 20_3]
          Length = 438

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 97/382 (25%), Gaps = 32/382 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSP 167
                 + V GT+GK SV+  +  I ++SG           +           +++    
Sbjct: 43  HKAYKTIHVAGTNGKGSVSHLLAAILRQSGFKVGLYTSPHLVDFRERIRVNGKKISQDYV 102

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHR-------------------LDGIKLIAGS 208
           +   +                 SS   +  R                    + I  I   
Sbjct: 103 VDFVERHRSFFEPLHPSFFELTSSMAFEYFRDQQVDYAVIEVGLGGRLDSTNIITPILSI 162

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH  +    +    A+     +               +     +          
Sbjct: 163 ITNISLDHTQFLGDTEEKIAAEKAGIIKKGVPVLLGEAEKRSVFDLFQNEARKAGAPFHY 222

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++                    V       +            V++AL        + I 
Sbjct: 223 ALSMGMLEGTGGLSMVHWKFPSVEYGEVIGELAGEVQQANAITVFSALHLLREKCGVDIL 282

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE--MILKNIRTITSGRIIV 386
              V E    +  + G      T      +  D  H     +      N        I +
Sbjct: 283 PEAVHEGFGHVTQLTGLMGRWQTLRTKPTVICDTGHNVGGWKHIAEHLNAMRSRFREIYM 342

Query: 387 VFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGN 444
           + G   D+D      +M   A      A V     R+   +      +  G+PG +    
Sbjct: 343 IVGMVNDKDIDGVLSLMPPDASYFFTQASV----ERAMPVKDFAMKAMRKGLPGVL-CET 397

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             EA+  A++  +K D++ + G
Sbjct: 398 VEEAVEKALKSADKDDLIFIGG 419


>gi|291529269|emb|CBK94855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale M104/1]
          Length = 453

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 93/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  K    +  N+  DH++ H T + Y  AK  + +     +   + Y
Sbjct: 164 EISSFQLET--IDTFKPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYCVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D   +              S     +  +L     I+    V    +         L 
Sbjct: 222 -EDEVLRNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVR---DKVIDVNELNLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N + A  + I+ G+    ++E L+K   V  R E+V                 +
Sbjct: 278 GKHNFENVMAACAMSISFGVPMDKIVEVLKKFKAVEHRIEYVTEKRGVRFYNDSKGTNPD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R  ++ G G D+       +      + ++ ++       +  +K
Sbjct: 338 AAIQGIRA-----MNRPTLLIGGGYDKQSEYDEWIEAFDGKVKELVLI------GQTADK 386

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    ++K    +A+    E     D +++
Sbjct: 387 IEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 424


>gi|170719003|ref|YP_001784164.1| UDP-N-acetylmuramate [Haemophilus somnus 2336]
 gi|168827132|gb|ACA32503.1| UDP-N-acetylmuramate [Haemophilus somnus 2336]
          Length = 458

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 71/236 (30%), Gaps = 7/236 (2%)

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     + +  P          ++ +K   + GC               +  A  +    
Sbjct: 204 QRQFHHMIRTMPKSGRILAFAHEQSVKETLDMGCWSEMHFLGQDQEWHTERIAHDSSHFA 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K  +  + + G+  + NAL+A      +G+      + L        R E  G 
Sbjct: 264 VYHQGKKAGEVQWNIVGQHNMNNALMAIAAAYHVGVQVKDACQALYSFVNAKRRLEVKG- 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQ-GKRPIMGKIALD 408
              G  +Y D+AH    +   L  +R    G  RI+ V     +  + G        AL 
Sbjct: 323 EVNGVTVYDDFAHHPAEILATLTALRDKVGGGARILAVLEPRSNTMKMGIHKDEIAPALA 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +        +  +I  + +          N    +   +     +D ++V
Sbjct: 383 RADYVFLLQPENIPWNVVEIANDCVQPAKWSGNLDNL---VDLIVTEAQPEDHILV 435


>gi|148242946|ref|YP_001228103.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RCC307]
 gi|147851256|emb|CAK28750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RCC307]
          Length = 458

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 130/402 (32%), Gaps = 51/402 (12%)

Query: 62  QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+ +    +V+S   +          +    VV          A           + +T
Sbjct: 65  EALPRWPSTVVISPGIAFDHPVLNQLRDRGCRVVGEVEVAWQAMA-------GIPWIGIT 117

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GK++V S V  + Q+ GL +   G                 S   LA A        
Sbjct: 118 GTNGKTTVTSLVAHLLQQGGLDAPACGNIGA-------------SAAELALACLEGEKPE 164

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
              V +  SS+ ++      ++   G +T L  DH+D H T + Y + K  L ++   + 
Sbjct: 165 RVVVEL--SSYQIEA--APSVQPSIGVWTTLTPDHLDRHGTLERYRSIKAGLLQQSGRQF 220

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A               A       +S   + +F          +  Q+          
Sbjct: 221 LNA------DDRDLFAHAAEWPQALWVSGRDKDQFSAAITPHLWVSGGQLCNQTGPLFPC 274

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               +PG     N  +A  + +  G+  A +         VP R E +   S        
Sbjct: 275 AALAMPGAHNRQNLALATAVALECGLSPAQIEAGCRSFPGVPHRLERIRELSGITYFNDS 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG---KIALDLADIAIVTDD 418
            A   ++  + L+++      R +VV   G    + KR   G   +     A   ++   
Sbjct: 335 KATNYDASLVALQSLE-----RPLVVLAGG----RAKRGEPGAWLEALGQKAAAVVL--- 382

Query: 419 NPRSEDPEKIRAEII--HGIPGFIE-KGNRIEAIRTAIEMLN 457
                + +    E++   G PG IE + +  +A+  A  +  
Sbjct: 383 ---FGEAQSTFRELLGSAGYPGVIEQQEHLDQALPLARRLAE 421


>gi|260878003|ref|ZP_05890358.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308089815|gb|EFO39510.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
          Length = 452

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 111/355 (31%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R             +       K+    +K +V
Sbjct: 205 HHLVRTVPGNGLILAPKQDQALADVLERGCWT---ERQFSGEDGDWQAHKLVLDGSKFEV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 ALQGE-KVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 EQ-GITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + I  +            +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQCKQ---PAFVDADIDNFVAKIVERAQPGDQILV 431


>gi|260589032|ref|ZP_05854945.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
 gi|260540811|gb|EEX21380.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
          Length = 474

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 108/422 (25%), Gaps = 44/422 (10%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASRLYGKH 113
            +GA+  +   A ++ D    +   T  +  DN     +               ++   +
Sbjct: 67  EKGAKIYIGQRASNITD-DIDLVVYTAAIHEDNPEFACAKEKGIPMITRAELLGQIMKNY 125

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              I         ++ +     + +     +  +G              +        + 
Sbjct: 126 RLPIAVAGTHGKTTTTSMISHVLLEAEADPTISVGGILPAIHGNIRVGNSETFITEACEY 185

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +                                   N+  DH+D+ +      ++  RL
Sbjct: 186 TNSFL----------------------SFFPKISIILNIDADHLDFFKDLDDIRHS-FRL 222

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F E LP +   II  D    +E+  +                           +     +
Sbjct: 223 FAEKLPADGTLIINGDIPNVEEITDKLPCEVITYGLEKAADYTAANITFDETAHASFDCL 282

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F   +PG   V NAL A  L   +G D   V   +        RF++ G   
Sbjct: 283 HKGQCIGRFSLAVPGLHNVSNALSAIALGEKVGFDLDTVRRGILHFGGTDRRFQYKG-KV 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADI 412
            G  I  DYAH    +   LK            VF      R +        +    A+ 
Sbjct: 342 AGVTIIDDYAHHPTEIAATLKTAANYPHKTTWCVFQPHTYTRTKALMDEFADVLAT-AER 400

Query: 413 AIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            I+ D     E          +  +I              E     +E     DVL+  G
Sbjct: 401 VILADIYAARETDNLGVSSSDLCDKINERGGKAYYFPTFDEIEAFLLENCINGDVLITMG 460

Query: 467 KG 468
            G
Sbjct: 461 AG 462


>gi|162420115|ref|YP_001608263.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Angola]
 gi|162352930|gb|ABX86878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Angola]
          Length = 460

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 100/355 (28%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDIKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  +        
Sbjct: 202 KQFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 LLDNNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P ++       I       +  + +   ++     D ++V
Sbjct: 381 ADEVFLFQPQH---IPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILV 432


>gi|253690076|ref|YP_003019266.1| UDP-N-acetylmuramate [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756654|gb|ACT14730.1| UDP-N-acetylmuramate [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 461

 Score = 50.7 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 104/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSS--FQIGPTSTI--SSFAQDNRLTTPSPIY 169
              ++AV GT GK++ A  V  I +  G        G       S+   D+         
Sbjct: 102 DRWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIGGVPGNFTVSARLGDSPFMVLEADE 161

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
              A     S+ V +                          NL  DH D     +A    
Sbjct: 162 YDCAFFDKRSKFVHY------------------CPRTLVLNNLEFDHADIFDDLKAIQ-- 201

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                   L +  P         +   +K+    GC         +     +  +I   Q
Sbjct: 202 ---KQFHHLVRLVPGSGKIILPTNDLNLKQVMGMGCWSEQELVGEEGTWRAQKVSIDASQ 258

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                      +  + L GE  ++N L+A      +G+  A     L        R E  
Sbjct: 259 YQVYLNNELVGEVHWKLVGEHNMHNGLMAIAAAHHVGVLPADACRALGGFINARRRLELR 318

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG--KIAL 407
           GT   G  +Y D+AH   ++   L  +R+   G    +      R    +  M   ++A 
Sbjct: 319 GTE-HGVTVYDDFAHHPTAILATLSALRSKVGGTAR-ILAVLEPRSNTMKLGMCKNELAP 376

Query: 408 DL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L  AD   +    P    P ++       +       +    +   ++     D ++V
Sbjct: 377 SLGRADEVFL--FQPAHI-PWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHILV 432


>gi|325288828|ref|YP_004265009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964229|gb|ADY55008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 454

 Score = 50.3 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 109/352 (30%), Gaps = 44/352 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TG++GK++  + + ++ +++G  +   G   T  S   +                  
Sbjct: 110 VGITGSNGKTTTTTLIGELAKKTGRPAVVAGNIGTAISGKVEGL---------------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                  V  E SS  L+   +D +++      N+  DH+D H T + Y  AK R+FE  
Sbjct: 154 --GSRGIVVAELSSFQLEL--IDRLRVNIAVLINITPDHLDRHGTLENYAAAKARIFENQ 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K+   + +        V +       RV  +  +        +               
Sbjct: 210 TGKDLAVLSW----DYPMVREYGKITQARVTYISTEELLADGIGLSGNDLVWSRDGKTTK 265

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   L G+  + N +    + + +G+    + E L     V  R E VG+      
Sbjct: 266 IIARNELQLRGKHNLENVMCGIAVGLEMGLSGPQIAEVLRGFAPVAHRQEVVGSYDGILY 325

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I        +S    L++          +V   GG           + A       ++  
Sbjct: 326 INDSKGTNPDSAIKALQSYEE------PIVLIAGGKNKGLDMTEFLEEAKKRVKSLVL-- 377

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIE-----KGNRIEAIRTAIEMLNKQDVLVV 464
                    K   ++                +  + +  AI    K DV+++
Sbjct: 378 -------VGKAADDLEIIAKKIGIKNIIKAVDFEDCVDKAIAEAAKGDVVLL 422


>gi|312873221|ref|ZP_07733277.1| bifunctional protein FolC [Lactobacillus iners LEAF 2052A-d]
 gi|311091232|gb|EFQ49620.1| bifunctional protein FolC [Lactobacillus iners LEAF 2052A-d]
          Length = 421

 Score = 50.3 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 111/402 (27%), Gaps = 36/402 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + P +   N   ++      L     +     +TGT+GK S A ++ ++ Q++G S   
Sbjct: 11  EHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRLLQKTGQSIGL 70

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205
                      +      P    L  +        + ++  +     L        +   
Sbjct: 71  FVSPYVEMFNERIQINGQPISDELLISAYRAVKNAIRNIQKKYPEFNLVTFEFETAMAFW 130

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  N     I+     +      +     ++                ++         
Sbjct: 131 IFAKQNCDYAVIEVGIGGEHDKTNVIVPQASIITTIGLDHEKVIGPTMFDIAHEKSGVIK 190

Query: 266 R-----------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +                 +     +   + L             +    K        P 
Sbjct: 191 KNRPVVLGNVPAKVLPLLMEKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFKLRPQ 250

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL            S   +E      ++P R++ V        I VD AH   +
Sbjct: 251 AEAYDIALALITFATLKFDISVSDIEDTINNTIIPARYQIVQKKPL---IMVDGAHNIQA 307

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDN-PRSED 424
           +  ++  +R I+ GRI ++ G   D+D  K        + L D       T  + PR+  
Sbjct: 308 VHELISYVRKISQGRIYILLGMMKDKDIAK-------VVKLFDPKEKITFTRISYPRAAT 360

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  ++   I       +   A       L + D+LVV G
Sbjct: 361 KSDIEEDLNCHIN---FIDDYRLAYDILKNKLTQDDILVVTG 399


>gi|325677954|ref|ZP_08157596.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus albus 8]
 gi|324110508|gb|EGC04682.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus albus 8]
          Length = 477

 Score = 50.3 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 68/419 (16%), Positives = 133/419 (31%), Gaps = 51/419 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE I+ ++A    +        +  +V +   + L +           N L V GT GK
Sbjct: 72  GAELIIYTAAIMADNPELIAAKASDAIVCERA-EILGVITGWY-----SNALCVCGTHGK 125

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++ +S + +I   +G           + S     R               +  +   +  
Sbjct: 126 TTTSSMLTEIFVDAGED-ISCVIGGKLPSIGGSGRAGKSDS---------MVCEACEY-- 173

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                    Q     +        N+  DH++Y +  +    +               I 
Sbjct: 174 ---------QDHFLKLFPDVAIILNVDADHLEYFKNIENIIKSF---HTFADMATKAVIF 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DDA +++ ++              +  +            +           +    +
Sbjct: 222 NGDDANTRKSLEGISGKELISFGWDRKNDYSAEIISKQGLVTKFRVFFKGEPAAEMEINV 281

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NAL A       G+      + L   H    RF+ +     G  I  DYAH  
Sbjct: 282 PGDHNVVNALAAIAAARYSGLSFEDAAKGLAAFHGAIRRFQLI-DKVGGITIVDDYAHHP 340

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPRSED 424
             + + LK  + +   R+  VF      R +       + AL++ADI+++TD    R ++
Sbjct: 341 AEIAVTLKAAKGLDFNRVWAVFQPFTYSRTEILMDDFAR-ALEIADISVITDIMGSREKN 399

Query: 425 PEKIRAEII-HGIPGFI----------------EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  E++       +                ++ N  E I   I+   + D+++  G
Sbjct: 400 EHGIYTEMLGAKTKNAVWFNTPHHVVDKQTAEQKEKNFDECIDYIIKNKQQGDIVITLG 458


>gi|260493998|ref|ZP_05814129.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_33]
 gi|260198144|gb|EEW95660.1| folylpolyglutamate synthase [Fusobacterium sp. 3_1_33]
          Length = 415

 Score = 50.3 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 113/360 (31%), Gaps = 25/360 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQDNRLTTPS-- 166
           ++   ++ +TGT+GK SV++ V++I   +G    +             + +++  +    
Sbjct: 40  QNSYKVIHITGTNGKGSVSTTVEKILLEAGYKVGKYTSPHILEFNERISFNDKYISNEDV 99

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I      +         +         D   L+         TN+  D+I
Sbjct: 100 AKYYEKVKKIIDEHNIQATFFEVTTAMMFDYFKDMKADYVILEAGMGGRYDATNIC-DNI 158

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               T  +  + +          +  A I  +  Y+               +       +
Sbjct: 159 VSVITNVSLEHTEYLGDTIYKIAKEKAGIIKNCPYTIFADNNPDVKKAIEEATDKYVNVL 218

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K    +       +    + +           Y   + A   +        +++   
Sbjct: 219 KKYKNSTYNLDFNTFSTNIFINGNKYEYSLFGDYQYKNFLCAYEVVKYLGIDENIIKEAV 278

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQ 396
           K  V   RFE     S+   +  D AH    +E + K ++   S   + V      D+D 
Sbjct: 279 KKVVWQCRFEVY---SKNPLVIFDGAHNLAGVEELTKIVKQHFSKDEVTVLVSILKDKD- 334

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             R  M +   +++   I+T   DNPR+   +++  + +     F  + + I+A   A+ 
Sbjct: 335 --RVSMFRKLNEISSCIILTSIPDNPRASTAKELY-DYVENKKDFEYEEDPIKAYNLALS 391


>gi|30022759|ref|NP_834390.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 14579]
 gi|206969750|ref|ZP_03230704.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134]
 gi|218233375|ref|YP_002369485.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264]
 gi|228910543|ref|ZP_04074357.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           200]
 gi|228954966|ref|ZP_04116983.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960959|ref|ZP_04122591.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048395|ref|ZP_04193963.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676]
 gi|229072191|ref|ZP_04205399.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185]
 gi|229081944|ref|ZP_04214436.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2]
 gi|229112151|ref|ZP_04241693.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15]
 gi|229129967|ref|ZP_04258932.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|229147254|ref|ZP_04275609.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|229152887|ref|ZP_04281070.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550]
 gi|229181005|ref|ZP_04308340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W]
 gi|229194183|ref|ZP_04321039.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876]
 gi|296505155|ref|YP_003666855.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           BMB171]
 gi|33301350|sp|Q816X6|MURC_BACCR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711860|sp|B7H746|MURC_BACC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29898318|gb|AAP11591.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 14579]
 gi|206735438|gb|EDZ52606.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134]
 gi|218161332|gb|ACK61324.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus B4264]
 gi|228589274|gb|EEK47237.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228602562|gb|EEK60048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W]
 gi|228630707|gb|EEK87353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550]
 gi|228636212|gb|EEK92687.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|228653492|gb|EEL09365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228671267|gb|EEL26569.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15]
 gi|228701532|gb|EEL54026.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2]
 gi|228710929|gb|EEL62896.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185]
 gi|228723120|gb|EEL74497.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676]
 gi|228798739|gb|EEM45720.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804693|gb|EEM51295.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228849107|gb|EEM93947.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           200]
 gi|296326207|gb|ADH09135.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           BMB171]
          Length = 436

 Score = 50.3 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    S+         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMSQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFADINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R IV         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|319401523|gb|EFV89733.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis FRI909]
          Length = 449

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 120/355 (33%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S                   
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 154 -AQEVKSDEYLITELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +           Q       K   I       I+
Sbjct: 211 KNQTKDDYLICNY----HQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L       N L A    I  G+    +++ L     +  R +++GTN  
Sbjct: 267 TKDLVLPGEHNL------ENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +         I+    G DR                D  I
Sbjct: 321 NKYYNDSKATNTLATQFALNSFDQ-----PIIWLCGGLDRGNEF------------DELI 363

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  +K            I+  +  +A+    +++   DV+++
Sbjct: 364 PYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|187735162|ref|YP_001877274.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425214|gb|ACD04493.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 436

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 131/429 (30%), Gaps = 44/429 (10%)

Query: 47  VAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFA 106
           +A++G    G      AI  GA   V  ++ S+  +   I  +T     ++ R F +   
Sbjct: 8   IAVLGAGRSGRAAARLAIKHGARVCVFDASSSIDGWPEDIPLHTAATE-EDGRAFHADMV 66

Query: 107 SRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--- 162
               G +     +   G  G  ++           G      G     ++ +   ++   
Sbjct: 67  VISPGIETDSPFVKSFGREGVETIGEMELACRFYHGRIIAITGTNGKTTTTSLVEKILLR 126

Query: 163 -----TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                       +  A   L       +++E SS  L+  R          + N   DH+
Sbjct: 127 AGKTAVACGNYGVPVAEILLRDSVPDVLALEVSSFQLETIR--DFHPDVAVWLNFAPDHM 184

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
           D +++ + Y  AK+ +F+    K+   +          +            +     +  
Sbjct: 185 DRYKSVEDYHRAKLHIFDNQTEKDLAVVRSG--ERLPHLKASVLTFSPEDPAADLYYRGP 242

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            + +  A     + T   +                 NA+ A   C  +GI +    E L+
Sbjct: 243 LILEGGAPLLNLEGTTLNQR------------HNAENAMAAVLACRHLGIPAETAAEVLK 290

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +      R E V T      +    A   ++LE  LK+  +      +++   G D+   
Sbjct: 291 EFAPPGHRCETVRTLDGVLWLNDSKATNLHALEAALKSQHS-----PVILIAGGKDKGLD 345

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI---EKGNRIEAIRTAIE 454
             P+   +   +    +            +I  ++ H     +   +  +    +  A  
Sbjct: 346 YVPLRPMLKEKVRACVVF----------GQIADQLQHAFSPAVPTEKAADVEACVAKARS 395

Query: 455 MLNKQDVLV 463
           +    D ++
Sbjct: 396 LARPGDTVL 404


>gi|308403999|ref|ZP_07493926.2| hypothetical protein TMLG_04180 [Mycobacterium tuberculosis
          SUMu012]
 gi|308365616|gb|EFP54467.1| hypothetical protein TMLG_04180 [Mycobacterium tuberculosis
          SUMu012]
          Length = 84

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 24/60 (40%)

Query: 7  IYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQ 66
          +       + +         +R +  V+  ++ +  G +F A+ G+   G   +  AIA+
Sbjct: 25 LADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIAR 84


>gi|293378750|ref|ZP_06624908.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
 gi|292642678|gb|EFF60830.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
          Length = 496

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 137/410 (33%), Gaps = 55/410 (13%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAG-----WIFVAIVGNKE-----------DGHL 58
           ++   +   +  +R I +V   S H++        +FV +   +            DG+ 
Sbjct: 11  MDGHYLKKYRDLDRNIQDVEYFSGHLKRNMDYSDTMFVCVSPERRSYVNRKVVKWRDGN- 69

Query: 59  FIPQAIAQ----GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
              Q I +    G   IV          +       P  +V+++RKFL   +++L     
Sbjct: 70  --EQIIGKENWFG--VIVTEKPIMDPSVTT------PQFIVEDSRKFLLELSAKLRSCFV 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             ++A+TG++GK+S    +  + Q   +  +                 L+ P  + L   
Sbjct: 120 NPVVAITGSAGKTSTRMMITHLLQEEKVLENRGNHNVRFAVPLYMSKLLSNPDVLNL--- 176

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              +S   +      + S+ + Q             T++G  H+   +  +     K ++
Sbjct: 177 --EVSVNALNSYDTGSMSNLIQQD--------IAIVTSIGEAHLSSLKNTKGVAVHKAKI 226

Query: 234 FEELLPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           FE L       I          ++        +   V S+    + + +K++       +
Sbjct: 227 FEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHDASRDVFVKQISQKREYCE 286

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V +S  G+D      +  E  + N+L A  +   +  + +  ++  E    +P   E   
Sbjct: 287 VLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTI 346

Query: 351 T--NSRGGRIYVDYAHT-----SNSLEMILKNIRTITSGRIIVVFGCGGD 393
               +     ++D  H        +       I+    G  +++ G   D
Sbjct: 347 YTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIAD 396


>gi|312871580|ref|ZP_07731672.1| bifunctional protein FolC [Lactobacillus iners LEAF 3008A-a]
 gi|311092805|gb|EFQ51157.1| bifunctional protein FolC [Lactobacillus iners LEAF 3008A-a]
          Length = 421

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 111/402 (27%), Gaps = 36/402 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + P +   N   ++      L     +     +TGT+GK S A ++ ++ Q++G S   
Sbjct: 11  EHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRLLQKTGQSIGL 70

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205
                      +      P    L  +        + ++  +     L        +   
Sbjct: 71  FVSPYVEMFNERIQINGQPISDELLISAYRAVKNAIRNIQKKYPEFNLVTFEFETAMAFW 130

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  N     I+     +      +     ++                ++         
Sbjct: 131 IFAKQNCDYAVIEVGIGGEHDKTNVIVPQASIITTIGLDHEKVIGPTMFDIAHEKSGVIK 190

Query: 266 R-----------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +                 +     +   + L             +    K        P 
Sbjct: 191 KNRPVVLGNVPAKVLPLLMEKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFKLRPQ 250

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL            S   +E      ++P R++ V        I VD AH   +
Sbjct: 251 AEAYDIALALITFATLKFDISVSDIEDTINNTIIPARYQIVQKKPL---IMVDGAHNIQA 307

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDN-PRSED 424
           +  ++  +R I+ GRI ++ G   D+D  K        + L D       T  + PR+  
Sbjct: 308 VHELISYVRKISQGRIYILLGMMKDKDIAK-------VVKLFDPKEKITFTRISYPRAAT 360

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  ++   I       +   A       L + D+LVV G
Sbjct: 361 KSDIEEDLNCHIN---FIDDYRLAYDILKNKLTQDDILVVTG 399


>gi|119963929|ref|YP_948107.1| folylpolyglutamate synthase/dihydrofolate synthase, bifunctional
           protein [Arthrobacter aurescens TC1]
 gi|119950788|gb|ABM09699.1| folylpolyglutamate synthase/dihydrofolate synthase, bifunctional
           protein [Arthrobacter aurescens TC1]
          Length = 455

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRD-----Q 396
           PGR E V T      + VD AH  + + +  + I+   +  +++VV G   ++D     +
Sbjct: 308 PGRLEVVRTAPT---VVVDAAHNPDGIRVSSEAIQEAFSFSKLVVVVGVLREKDAEEILK 364

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH----GIPGFIEKGNRIEAIRTA 452
             +  +G +A +       T  N     P    AE+      G           +A+  A
Sbjct: 365 TLKESLGGLAEEFC----FTQSNSARAVPAAELAELAVDLGFGEDNVHIAEKLDDALEWA 420

Query: 453 IEMLNKQD----VLVVAG 466
           IE     D     ++V G
Sbjct: 421 IERAESNDDLAGGVLVTG 438


>gi|33860582|ref|NP_892143.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|44888175|sp|Q7V3P8|MURC_PROMP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33633524|emb|CAE18481.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 88/301 (29%), Gaps = 28/301 (9%)

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             +       G   N+  DH D++       ++  +                 +   K  
Sbjct: 177 GTIKNYNSDIGIINNIDFDHCDHYSNIDEVLSSFKKFASNCQ-------KLLINYDCKFT 229

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                +     +       +  +  +                      P+PG   + N  
Sbjct: 230 KNNFTSKNQWSIKESNNIAYSLIPNIINKDKTVGKYYEHGKFIDIINIPVPGLHNLSNIT 289

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C  +G+    + ++ E L +   RFEF G  ++   IY DYAH  N ++  +   
Sbjct: 290 AAIAACRMVGVSFKEIKKNTESLKLPKKRFEFRGEINQ-RIIYDDYAHHPNEIKATIDLA 348

Query: 377 RTIT----------SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE-- 423
           R              GR+I +F      R +       K     AD+  VT+     E  
Sbjct: 349 RLFIKDKNSSDREEKGRLIAIFQPHRFTRVKQFIHEFVKELSK-ADVIYVTNIFGAGEKN 407

Query: 424 ----DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG--HETVHIVTN 477
               D + I   I           +  E      ++  K D ++  G G  H    I+ N
Sbjct: 408 IDNIDSQLIANLIYKNNKNVTCLKDNYEINEKFFKLTKKNDFIINMGAGDCHNLWSILKN 467

Query: 478 G 478
            
Sbjct: 468 K 468


>gi|331696621|ref|YP_004332860.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951310|gb|AEA25007.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 476

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 100/278 (35%), Gaps = 25/278 (8%)

Query: 208 SFTNLGRDHIDYHQTQQAYF--NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             TN+  DH+D+H T++AY                       A  A   E  +       
Sbjct: 182 VVTNVEPDHLDHHGTEEAYRAVFEAFVGRIAEKGTLVVCADDAGAAALGEQAEARGLTVR 241

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           R            L          ++       +      +PGE    NAL A    + +
Sbjct: 242 RYGRTATGPDDAVLLDHVPDGPGARMRARHRDAELAVRLAVPGEHMALNALAALLAGVEL 301

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGR 383
           G     +L  L +   V  RFEF G  + G  +Y DYAH    +   L+  R++   +GR
Sbjct: 302 GAPVDGLLAGLAEFDGVRRRFEFKGRAA-GVAVYDDYAHHPTEVAATLRAARSVAGPTGR 360

Query: 384 IIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAE------ 431
           ++V F      R +      G+ AL LAD  +V D     EDPE      + A+      
Sbjct: 361 VVVAFQPHLYSRTRLFATEFGR-ALALADEVVVLDVYGAREDPEPGVTGALVADAVTLPP 419

Query: 432 -IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            ++H +P + +      A+     +    D+++  G G
Sbjct: 420 QVVHHVPSWSQVP----AVLA--RLARPGDLVLTMGAG 451


>gi|258625793|ref|ZP_05720672.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
 gi|258582031|gb|EEW06901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
          Length = 451

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 104/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ +S V  + +  G    F +G        +     +    +   
Sbjct: 101 HDRWVIAVSGTHGKTTTSSMVAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDNLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P           E +      GC   +     +     +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPKQDEALADVFKRGCWSETEFSGEQGEWQAEKITADGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V          G        +L  
Sbjct: 320 EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     E+            N  E +    +     D ++V
Sbjct: 380 ADTVYLYQ-------PSNIPWSVEEVAKQCAQPAQVSANMDEFVAMIAKEAKVGDQILV 431


>gi|229523208|ref|ZP_04412615.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           TM 11079-80]
 gi|229339571|gb|EEO04586.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio cholerae
           TM 11079-80]
          Length = 421

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 103/365 (28%), Gaps = 16/365 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++  S         I    +           + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQADYSVGVYSSPHLIRYNERVRINGQDLADEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    +S+     G    L       + ++       GR             
Sbjct: 106 TQAFAHIEQERGDISLSLFEFGTLAALYLFEQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +         +   +   F         +     A  L        A+   ++       
Sbjct: 226 QFSYEKTSATTWNWRSGRFELTDLPIPSLPLPNAATALMALGCSGLAISDINIVDGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   S    I +D AH  +S   +++ +      R I +VFG   D+D      +
Sbjct: 286 QLAGRMQVISHQPTIVLDVAHNPHSAHYLVQQLTQRYPERTIHLVFGMLHDKD------I 339

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDV 461
               ++L+           S       A++   +P    +  N + A   A+     QDV
Sbjct: 340 ASTVVELSPAVTHWYPASLSGPRAATAAQLCQYLPADITQYANPVSAFEAALTQAGAQDV 399

Query: 462 LVVAG 466
           +VVAG
Sbjct: 400 IVVAG 404


>gi|260823635|ref|XP_002606186.1| hypothetical protein BRAFLDRAFT_126502 [Branchiostoma floridae]
 gi|229291525|gb|EEN62196.1| hypothetical protein BRAFLDRAFT_126502 [Branchiostoma floridae]
          Length = 560

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/275 (6%), Positives = 45/275 (16%), Gaps = 4/275 (1%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A  GT+    + + V  +   +  +   I   +T     +      P    LA   ++ 
Sbjct: 259 IAGIGTTAG--IGTTVAVVAAGAVATETVIVTGTTTGGHRRHIPTVAPGATILAHGPAHT 316

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +      + + S+     +        +         H  +        +     +   
Sbjct: 317 RAHHCLRNNEQRSTERYHHYPWSWCNTRSDDHGCTRYHHYPWSWCNTRSDDHGCTRYHHY 376

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                                 +            +       +     +          
Sbjct: 377 PWSWCYTWSNDHGCTRYHHYPWSWCNTRSDDHGCARYHHYPWNRCYTWSHNYSCNRYYHY 436

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                                   C            H         R    G       
Sbjct: 437 PWSWCNTRSDHHGCTRYHHYPWSWCYTWSHHYGCTRYHHYPWSWCNTRSHDHGCTRYHHY 496

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            +      + S +            R        G
Sbjct: 497 PWSRC--NTRSHDHGCTRYHNYPWNRCYTWSHHYG 529


>gi|51594809|ref|YP_069000.1| UDP-N-acetylmuramate:L-Ala-D-Glu-meso-diaminopime late ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|170025980|ref|YP_001722485.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis YPIII]
 gi|186893818|ref|YP_001870930.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis PB1/+]
 gi|51588091|emb|CAH19697.1| UDP-N-acetylmuramate:L-Ala-D-Glu-meso-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|169752514|gb|ACA70032.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis YPIII]
 gi|186696844|gb|ACC87473.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis PB1/+]
          Length = 461

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 100/355 (28%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDIKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  +        
Sbjct: 202 KQFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 LLDNNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P ++       I       +  + +   ++     D ++V
Sbjct: 381 ADEVFLFQPQH---IPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILV 432


>gi|42783876|ref|NP_981123.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10987]
 gi|49481451|ref|YP_038734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|206978123|ref|ZP_03239006.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97]
 gi|217962174|ref|YP_002340744.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH187]
 gi|228987941|ref|ZP_04148048.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229141422|ref|ZP_04269960.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|229158298|ref|ZP_04286365.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342]
 gi|229198852|ref|ZP_04325544.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293]
 gi|48428295|sp|P61675|MURC_BACC1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798279|sp|Q6HCJ2|MURC_BACHK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711861|sp|B7HSM3|MURC_BACC7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|42739806|gb|AAS43731.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus ATCC 10987]
 gi|49333007|gb|AAT63653.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|206743659|gb|EDZ55083.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97]
 gi|217066938|gb|ACJ81188.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH187]
 gi|228584626|gb|EEK42752.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293]
 gi|228625256|gb|EEK82016.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228642203|gb|EEK98496.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|228771806|gb|EEM20265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|324328581|gb|ADY23841.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 436

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R IV         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|331006871|ref|ZP_08330124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium IMCC1989]
 gi|330419322|gb|EGG93735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium IMCC1989]
          Length = 454

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 140/397 (35%), Gaps = 41/397 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV+S   SL+           + +V +      LFA  +       ++A+TG++ KS
Sbjct: 70  ASEIVISPGVSLKTPELQAAIAEGVSIVGDIE----LFARAVTK----PVIAITGSNAKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++    GL     G          +N L     + L                 
Sbjct: 122 TVTTLVGEMAAACGLLPAVGGNLGVPVLELLNNTLADVFVLEL----------------- 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             SS  L+      +K +A +  N+  DH+D + +   Y   K R++          II 
Sbjct: 165 --SSFQLET--TYSLKPVAATVLNVSHDHMDRYASLAEYHQVKQRIYRH----AESIIIN 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  ++  + +  N     +        +    + A  +K  ++             + 
Sbjct: 217 RQDVLTQPPLSKEANVISFGVDSAGNSPDMRSFGLLAQGDKLFLSHKFAPLLSTEDIQIK 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A G     +L+ L+    +  R E++ T +    I         
Sbjct: 277 GRHNYANALAALALGSAAGFGMEGMLDALKTFKGLQHRCEYIATVNDVTYINDSKGTNVG 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++   ++ + + IV+   G  +     P++           I+        D EK
Sbjct: 337 ATLAAIEGF-SVKNEKNIVLIAGGDGKGADFSPLV-DAVNRSVKTLILI-----GHDAEK 389

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   ++H +   ++  + I+A++ A     K DV+++
Sbjct: 390 LYN-MLHQVVSCVKAESLIDAVKQASINAGKGDVVLL 425


>gi|257465205|ref|ZP_05629576.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
 gi|257450865|gb|EEV24908.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
          Length = 475

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 128/429 (29%), Gaps = 51/429 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +V SSA    +           P++      + L+      +G  
Sbjct: 69  GHQ--AENIE-GASVVVASSAIDESNPEVAAAKEARIPVIQRA---QMLAEIMRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+ GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAIAGTHGKTTTTAMISMIYTE----AKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN+  DH+D +             
Sbjct: 173 EADESDASFLHLQPMVS-----------------VVTNIEPDHMDTYGGDFEKMKETYVR 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A++ ADD    E+  +                   ++       +   T+
Sbjct: 216 FLRNLPFYGLAVMCADDETVMEIAPKVGRQVISYGFSEKADY--RIEDYQQTGFQGHYTV 273

Query: 294 SVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                +   +   +PG     NA  A  +    GI +  +L  L        RF+ +G+ 
Sbjct: 274 VCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 353 SRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIAL 407
            R      +  DY H    +++ +K  R     + +V+        + +       ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTRDLFDDFVQVLS 393

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
              D  I+ +     E P      + +   I   G    I   +  +      +++   D
Sbjct: 394 Q-VDALIMLNVYAAGEAPIVGAESKDLCRSIRTLGKVDPILVSDTSQLGEVLDQIIQDGD 452

Query: 461 VLVVAGKGH 469
           +++  G G+
Sbjct: 453 LILAQGAGN 461


>gi|255002719|ref|ZP_05277683.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Puerto Rico]
 gi|255003848|ref|ZP_05278649.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Virginia]
          Length = 474

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 126/418 (30%), Gaps = 54/418 (12%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILV-VDNTRKFLSLFASRLYGKHPENILAVTG 122
           Q A+ +V S+A    +    + I +   +L   +   K L               + V+G
Sbjct: 68  QNADVVVYSNAIKDDNVELQSAIAAGKLVLRRTELLSKALGA----------GRTIVVSG 117

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + GK+S    +  I + +G+             +  + ++                    
Sbjct: 118 SHGKTSTTGMIASIMEHAGMDPTVF-IGGIAFHYGNNYKMGAGE---------------W 161

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             V  + S  G        +       TNL  +H D +   +A           +    +
Sbjct: 162 AVVEGDESDAGF-----TELPCEIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGA 216

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +            K      C  ++ G +G  +       + +     I     +   
Sbjct: 217 SVMPSRLSFTLGNGAK------CSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEIC 270

Query: 303 LF---PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                P+PG   V NAL AA +   IG+    +   LE    V  RFE +  N  G    
Sbjct: 271 CGVRLPVPGRHNVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEIIA-NVGGVTFV 329

Query: 360 VDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTD 417
            DYAH    +E      + + TSGR+I +       R Q              D  I+TD
Sbjct: 330 DDYAHHPTEIEASRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKF-DYLILTD 388

Query: 418 DNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             P  E+         I  E+   G    +              +    DV++  G G
Sbjct: 389 VYPAGEEVISGCESLDIVREMKSRGFDQVVHASTPDTITDIVASVAQPGDVVIAMGAG 446


>gi|22124579|ref|NP_668002.1| ligase [Yersinia pestis KIM 10]
 gi|45440418|ref|NP_991957.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806067|ref|YP_649983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Antiqua]
 gi|108813423|ref|YP_649190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Nepal516]
 gi|145600815|ref|YP_001164891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Pestoides
           F]
 gi|153997296|ref|ZP_02022396.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis CA88-4125]
 gi|165928167|ref|ZP_02223999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937458|ref|ZP_02226021.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011290|ref|ZP_02232188.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213978|ref|ZP_02240013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401240|ref|ZP_02306740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420474|ref|ZP_02312227.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423266|ref|ZP_02315019.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218930533|ref|YP_002348408.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e
           so-diaminopimelate ligase [Yersinia pestis CO92]
 gi|229839173|ref|ZP_04459332.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896662|ref|ZP_04511829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229899737|ref|ZP_04514878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903899|ref|ZP_04519012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270489112|ref|ZP_06206186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294505353|ref|YP_003569415.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Z176003]
 gi|21957381|gb|AAM84253.1|AE013669_3 putative ligase [Yersinia pestis KIM 10]
 gi|45435275|gb|AAS60834.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777071|gb|ABG19590.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Nepal516]
 gi|108777980|gb|ABG12038.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Antiqua]
 gi|115349144|emb|CAL22107.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e
           so-diaminopimelate ligase [Yersinia pestis CO92]
 gi|145212511|gb|ABP41918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Pestoides
           F]
 gi|149288933|gb|EDM39013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis CA88-4125]
 gi|165914563|gb|EDR33177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919854|gb|EDR37155.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989674|gb|EDR41975.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204773|gb|EDR49253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961280|gb|EDR57301.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049265|gb|EDR60673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057436|gb|EDR67182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679669|gb|EEO75772.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229687229|gb|EEO79304.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695539|gb|EEO85586.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700440|gb|EEO88472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262363418|gb|ACY60139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis D106004]
 gi|262367207|gb|ACY63764.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis D182038]
 gi|270337616|gb|EFA48393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294355812|gb|ADE66153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Z176003]
 gi|320013724|gb|ADV97295.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 460

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 100/355 (28%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDIKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  +        
Sbjct: 202 KQFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 LLDNNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P ++       I       +  + +   ++     D ++V
Sbjct: 381 ADEVFLFQPQH---IPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILV 432


>gi|293611410|ref|ZP_06693706.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826282|gb|EFF84651.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 457

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 88/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G    G  +Y D+AH   ++
Sbjct: 283 HSVANALATIVAAQHVGVTLEQACEALSNFGGVKRRMELLG-TVNGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I+  +    + D +V+
Sbjct: 395 LDW-DLQPVIEAASNHAQVSRSLDEIIKRIVNEAGEGDAVVI 435


>gi|228993421|ref|ZP_04153337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM
           12442]
 gi|228999465|ref|ZP_04159044.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17]
 gi|229007021|ref|ZP_04164649.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228754260|gb|EEM03677.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228760410|gb|EEM09377.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228766489|gb|EEM15132.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudomycoides DSM
           12442]
          Length = 436

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    S+         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGNLMSKYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYYPDYAIMTNIDFDHPDYFTDINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFGGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R IV         R +       +     AD   + D   + R    +
Sbjct: 322 ATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGD 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIQDLQKRIDGAELITD 398


>gi|256850929|ref|ZP_05556318.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661143|ref|ZP_05862057.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 115-3-CHN]
 gi|282934158|ref|ZP_06339436.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|297205809|ref|ZP_06923204.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii JV-V16]
 gi|256615991|gb|EEU21179.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548080|gb|EEX24056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 115-3-CHN]
 gi|281301772|gb|EFA94038.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|297148935|gb|EFH29233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii JV-V16]
          Length = 456

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 108/355 (30%), Gaps = 44/355 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++      +I        G  ++ +G      S               
Sbjct: 113 APFVCVTGSNGKTTTVMLTSEIIDHHLAKSGHHAYAVGNIGVPISEVV------------ 160

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                   +     + VE SS  L    +  IK    +  ++   H+DYH+T + Y  AK
Sbjct: 161 ------QKATKDDVLVVEISSFQLL--GVTDIKPKVAAIVDIYPTHLDYHKTMENYIAAK 212

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + +       E     +      + + K       ++ +                   Q 
Sbjct: 213 LNVTRFQTCDEYFIANF---DQKEILSKEEATTKAKIQTFSMNDHSASYFVGDEYLESQS 269

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I            LPG   + N++VA  +   +G +++ +   L        R ++V 
Sbjct: 270 EKIMK-----ISDIKLPGRHNLQNSMVAIAISKLMGAENSDIQAVLSTFAGARHRLQYVT 324

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T +         +    +  + +K           V+ G G DR      ++  +     
Sbjct: 325 TINDVKVYNDSKSTNIEAATVAIKAFSEPE-----VLIGGGLDRGFTFDSLVP-LLKKHV 378

Query: 411 DIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++       E    +       GI          EA+  A E+    DVL++
Sbjct: 379 KAVVL-----YGETRYLLADAARKAGIKEIKIVNTLKEAVPVAYELTKPGDVLLL 428


>gi|168464693|ref|ZP_02698596.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195632876|gb|EDX51330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 457

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|242242465|ref|ZP_04796910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
 gi|242234039|gb|EES36351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
          Length = 454

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 120/355 (33%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S                   
Sbjct: 116 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNV----------------- 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 159 -AQEVKSDEYLITELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +           Q       K   I       I+
Sbjct: 216 KNQTKDDYLICNY----HQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRIIN 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L       N L A    I  G+    +++ L     +  R +++GTN  
Sbjct: 272 TKDLVLPGEHNL------ENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTNRT 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +         I+    G DR                D  I
Sbjct: 326 NKYYNDSKATNTLATQFALNSFDQ-----PIIWLCGGLDRGNEF------------DELI 368

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  +K            I+  +  +A+    +++   DV+++
Sbjct: 369 PYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|116873466|ref|YP_850247.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116742344|emb|CAK21468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 455

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 124/401 (30%), Gaps = 31/401 (7%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + QG + I  S    L D    +    P +  +N        A  L  K P     +T  
Sbjct: 53  LEQGIKVICGSHPIELLDEGFELVIKNPGIPYNNPM-----IAKALKLKIP----VITEV 103

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
                ++         +   +        + +  ++N       I    +    ++    
Sbjct: 104 ELAYQISEAPIVGITGTNGKTTTTTIIHHMLNAHKENSSLLAGNIGFPASAVAENATSEQ 163

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     +  
Sbjct: 164 YISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDFL 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I + D    K + K+         +    G+  +++    +          E       
Sbjct: 222 VINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGDIM-------FDDEVIGSRDS 273

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             A
Sbjct: 274 ILLPGEHNLENILASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSKA 333

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               + +  LK  +       +V+   G DR      ++       + I          E
Sbjct: 334 TNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------GE 381

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +KI               N   A+  A       D++++
Sbjct: 382 TADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESEPGDIILL 422


>gi|262382055|ref|ZP_06075193.1| folylpolyglutamate synthase [Bacteroides sp. 2_1_33B]
 gi|262297232|gb|EEY85162.1| folylpolyglutamate synthase [Bacteroides sp. 2_1_33B]
          Length = 438

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/382 (13%), Positives = 96/382 (25%), Gaps = 32/382 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSP 167
                 + V GT+GK SV+  +  I ++SG           +           +++    
Sbjct: 43  HKAYKTIHVAGTNGKGSVSHLLAAILRQSGFKVGLYTSPHLVDFRERIRVNGKKISQDYV 102

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHR-------------------LDGIKLIAGS 208
           +   +                 SS   +  R                    + I  I   
Sbjct: 103 VDFVERHRSFFEPLHPSFFELTSSMAFEYFRDQQVDYAVIEVGLGGRLDSTNIITPILSI 162

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  DH  +    +    A+     +               +     +          
Sbjct: 163 ITNISLDHTQFLGDTEEKIAAEKAGIIKKGVPVLLGEAEKRSVFDLFQNEARKAGAPFHY 222

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           ++                    V       +            V++AL        + I 
Sbjct: 223 ALSMGMLEGTGGLSMVHWKFPSVEYGEVIGELAGEVQQANAITVFSALHLLREKCGVDIL 282

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE--MILKNIRTITSGRIIV 386
              V E    +  + G      T      +  D  H     +      N        I +
Sbjct: 283 PEAVHEGFGHVTQLTGLMGRWQTLRTKPTVICDTGHNVGGWKHIAEHLNAMRSRFREIYM 342

Query: 387 VFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGN 444
           + G   D+D      +M   A      A V     R+   +      +  G+PG      
Sbjct: 343 IVGMVNDKDIDGVLSLMPPDASYFFTQASV----ERAMPVKDFAMKAMRKGLPGV-RCET 397

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             EA+  A++  +K D++ + G
Sbjct: 398 VKEAVEKALKSADKDDLIFIGG 419


>gi|291525273|emb|CBK90860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale DSM 17629]
          Length = 453

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  K    +  N+  DH++ H T + Y  AK  + +     +   + Y
Sbjct: 164 EISSFQLET--IDTFKPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYCVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D   +              S     +  +L     I+    V    +         L 
Sbjct: 222 -EDEVLRNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVR---DEVIDVNELNLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N + A  + I+ G+    ++E L+    V  R E+V                 +
Sbjct: 278 GKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVEHRIEYVTEKRGVRFYNDSKGTNPD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R  ++ G G D+       +      + ++ ++       +  +K
Sbjct: 338 AAIQGIRA-----MNRPTLLIGGGYDKQSEYDEWIEAFDGKVKELVLI------GQTADK 386

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    ++K    +A+    E     D +++
Sbjct: 387 IEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 424


>gi|329734436|gb|EGG70749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU045]
          Length = 449

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 120/355 (33%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S                   
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 154 -AQEVKSDEYLITELSSFQLL--GIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +           Q       K   I       I+
Sbjct: 211 KNQTKDDYLICNY----HQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L       N L A    I  G+    +++ L     +  R +++GTN  
Sbjct: 267 TKDLVLPGEHNL------ENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +         I+    G DR                D  I
Sbjct: 321 NKYYNDSKATNTLATQFALNSFDQ-----PIIWLCGGLDRGNEF------------DELI 363

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  +K            I+  +  +A+    +++   DV+++
Sbjct: 364 PYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|251810613|ref|ZP_04825086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805773|gb|EES58430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 454

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 120/355 (33%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S                   
Sbjct: 116 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKV----------------- 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 159 -AQEVKSDEYLITELSSFQLL--GIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +           Q       K   I       I+
Sbjct: 216 KNQTKDDYLICNY----HQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRIIN 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L       N L A    I  G+    +++ L     +  R +++GTN  
Sbjct: 272 TKDLVLPGEHNL------ENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTNRT 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +         I+    G DR                D  I
Sbjct: 326 NKYYNDSKATNTLATQFALNSFDQ-----PIIWLCGGLDRGNEF------------DELI 368

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  +K            I+  +  +A+    +++   DV+++
Sbjct: 369 PYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|121534136|ref|ZP_01665961.1| FolC bifunctional protein [Thermosinus carboxydivorans Nor1]
 gi|121307239|gb|EAX48156.1| FolC bifunctional protein [Thermosinus carboxydivorans Nor1]
          Length = 429

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 50/165 (30%), Gaps = 23/165 (13%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
                 + A  L       +   L         PGRFE          I VD AH  +  
Sbjct: 263 NCAIAVMTALVLAERGAPITPDALAAGLAAARWPGRFEVFPGEPV---IVVDGAHNPHGA 319

Query: 370 EMILKNIRTITSGRII-VVFGCGGDRDQGK------RP-IMGKIALDLADIAIVTDDNPR 421
             +   +  +  GR I  + G   D+D         RP  M   A  L++         R
Sbjct: 320 RALRVALDEVFGGRPITFLLGILRDKDITGIVRALVRPQDMVVAAAPLSE---------R 370

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  P +I  EI        E  +    +  A  +     V+  AG
Sbjct: 371 AAAPGEIAREIG---GSVEEAPSIAAGLAQARRLAGADGVVCAAG 412


>gi|306820978|ref|ZP_07454597.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550919|gb|EFM38891.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 448

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +  +++  G+  N+  DH++ H+T + Y  AK R+ E     +   +  
Sbjct: 160 ELSSFQLES--ITDLRVHIGAILNITPDHLERHKTFEEYKKAKYRIAENQSSDDFLILNK 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D     + +K    +     S+  + +               +    +         L 
Sbjct: 218 DDKEIDIKNVK----SKVIYFSMKEKLEDGVYYDSERQAIISSLFSKNQEIIKRGDINLL 273

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  V N L A  + ++  I   ++ + ++    V  R + V        +        +
Sbjct: 274 GDHNVENTLAAIAIALSDNIPVEIIRQGIKNFVAVKHRLQLVRKIGDVSYVNDSKGTNVD 333

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    LK +        I++   G D+      ++      +  + +        E   K
Sbjct: 334 STVKALKAV-----NTDIILIAGGYDKHVDFDEVIKAFDGKVKSLLLF------GETKYK 382

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           IR   +  G        N  + ++ A E+    D +++
Sbjct: 383 IRDTALKYGFDKIHIFDNLKDCVQKAYELSENNDTVLL 420


>gi|227504694|ref|ZP_03934743.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
 gi|227198704|gb|EEI78752.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
          Length = 484

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 137/426 (32%), Gaps = 59/426 (13%)

Query: 70  AIVVSSAYSLQDFSATI---RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD         +  P++   +    L               + + GT GK
Sbjct: 73  VVVTSFAAIPQDNPELAGARAAGIPVIRRSDLLAELME---------GHQQILLAGTHGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q++GL          ++    +    T +        S  S    +   
Sbjct: 124 TSTTSMTVTAMQQAGLD-PSFAIGGQLNRAGTNAHAGTGAAFVAEADESDASLLRYS--- 179

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+D+    +AY+      F + + +    ++
Sbjct: 180 -----------------PTVAVITNVEPDHLDFFHNAEAYYKV-FDDFADRIEESGYLVV 221

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV----------- 295
             +D ++ +   RA   G +VL  G          +       +  +SV           
Sbjct: 222 CLEDDHAAQTGLRALERGIQVLGYGSAEAGEKYPSIPLAAEVLEEKVSVIGMQVRVRVAL 281

Query: 296 ---EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              + ++  +   +PG   V N+L A       G + + + E L     V  RFEF GT 
Sbjct: 282 PGAQSQELSYELQIPGHHMVLNSLAALVSGGLAGGELSELAEGLTDFTGVRRRFEFRGTE 341

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVF-----GCGGDRDQGKRPIM 402
           S+  R++ DYAH    +  +L   R          R+I  F         + D+     +
Sbjct: 342 SQ-VRVFDDYAHHPTEVTAVLTAARQKVEAEGKGARVIACFQPHLYSRTMEFDKEFAQAL 400

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                 +        + P      +I  + +      I + N  EA +  + ++   DV+
Sbjct: 401 ALADAAVVLDIYGAREQPVEGITSRIITDKMPEDMKVIFEPNFSEAAQDVVSLVQPGDVV 460

Query: 463 VVAGKG 468
           +  G G
Sbjct: 461 LTIGAG 466


>gi|325578820|ref|ZP_08148867.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159644|gb|EGC71776.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 475

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 142/447 (31%), Gaps = 60/447 (13%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAY--SLQDFSATIRSNTPILV 94
           R  QAG  IF+                  QGA  +VVSSA      +  A  ++  P++ 
Sbjct: 58  RLAQAGAKIFIGHQAENV-----------QGASVVVVSSAIHEDNPELIAAKQNRIPVIQ 106

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                + L+      +G      +AV GT GK++  + +  I       +          
Sbjct: 107 RA---QMLAEIMRFRHG------IAVAGTHGKTTTTAMISMIYT----QAKLDPTFVNGG 153

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                 +           A +  S     H+    S                   TN+  
Sbjct: 154 LVKSAGKNAHLGASRYLIAEADESDASFLHLQPMVS-----------------VVTNIEP 196

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D ++       A    F   LP    A++ ADD    E++ +            +  
Sbjct: 197 DHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDTVLMELVPQVGRQVLTYGFSEHAD 256

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVL 333
              H++       +   T+     +   +   +PG+    NA  A  +    GI +  +L
Sbjct: 257 Y--HIEDYEQTGFQGHYTVVCPSGERINVLLNVPGKHNALNATAALAVAKEEGIGNEAIL 314

Query: 334 EHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
           E L        RF+ +G   R     R+  DY H    + + +K  R     + IV+   
Sbjct: 315 EALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQ 374

Query: 391 GGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIE 441
                + +       ++     D  I+ D     E P      + +   I + G    I 
Sbjct: 375 PHRYSRTRDLFDDFVQVLSQ-VDALIMLDVYAAGETPIVGADSKALCRSIRNLGKVDPIL 433

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +      +++   D+++  G G
Sbjct: 434 VSDTEQLGDVLDQIIQDGDLILAQGAG 460


>gi|315652426|ref|ZP_07905414.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
 gi|315485325|gb|EFU75719.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
          Length = 437

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 124/402 (30%), Gaps = 41/402 (10%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
           A   +D    I++    + V    + L    S+      +  +A++GT GK++  S +  
Sbjct: 56  AAIHKDNPEFIKAKEKNIKVMTRAQLLGYVMSKF-----KESIAISGTHGKTTTTSMLSY 110

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   + L    I     +     +  +                         E ++  L+
Sbjct: 111 ILLDTNLD-PTISVGGIVKKIRGNVYIGNGDTFVTEAC--------------EYTNSFLE 155

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
            +   G+        N+  DH+D+ +      ++  +  +    +    I    +   K 
Sbjct: 156 LYPTVGV------ILNIEEDHLDFFKDLDDIRDSFKKFVKNTSREGCIII----NDKIKN 205

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVY 313
             +        V+  G +    +   +            +  E    D    + G   +Y
Sbjct: 206 NREITMGYEGNVVRYGTENSDCYAANIRYDAIGYPTFDLVHKEETYEDVKLCVGGNHNIY 265

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NAL A  +   +G+    +   L +   V  RFE  G    G  I  DYAH  + +   L
Sbjct: 266 NALAAVCVAFELGVGIEDIRRGLLEFKGVDRRFEIKG-KLDGITIVDDYAHHPSEISATL 324

Query: 374 KNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPE 426
              +     R++VVF      R +        +     +  I+    P  E         
Sbjct: 325 NIAKRYPHDRLVVVFQPHTYTRTKALFEDFANVL-KNVEQVIIAKIYPARETDNLGVSSH 383

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +   I              E     +E L+K D+L+  G G
Sbjct: 384 LLSDRINELGGNATSFDTFDEIENYLLEDLHKGDLLITMGAG 425


>gi|258423773|ref|ZP_05686659.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
 gi|257846005|gb|EEV70033.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
          Length = 449

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 123/350 (35%), Gaps = 42/350 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVQPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR      ++  +    A +  
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVRAMVVF 375

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   +   K            IE  N  +A+    +++   DV+++
Sbjct: 376 -------GQTKTKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|256027223|ref|ZP_05441057.1| dihydrofolate synthase [Fusobacterium sp. D11]
          Length = 411

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 113/360 (31%), Gaps = 25/360 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQDNRLTTPS-- 166
           ++   ++ +TGT+GK SV++ V++I   +G    +             + +++  +    
Sbjct: 36  QNSYKVIHITGTNGKGSVSTTVERILLEAGYKVGKYTSPHILEFNERISFNDKYISNEDV 95

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I      +         +         D   L+         TN+  D+I
Sbjct: 96  AKYYEKVKKIIDEHNIQATFFEVTTAMMFDYFKDMKADYVILEAGMGGRYDATNIC-DNI 154

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               T  +  + +          +  A I  +  Y+               +       +
Sbjct: 155 VSVITNVSLEHTEYLGDTIYKIAKEKAGIIKNCPYTIFADNNPDVKKAIEEATDKYVNVL 214

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K    +       +    + +           Y   + A   +        +++   
Sbjct: 215 EKYKNSTYNLDFNTFSTNIFINGNKYEYSLFGDYQYKNFLCAYEVVKYLGIDENIIKEAV 274

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQ 396
           K  V   RFE     S+   +  D AH    +E + K ++   S   + V      D+D 
Sbjct: 275 KKVVWQCRFEVY---SKNPLVIFDGAHNLAGVEELTKIVKQHFSKDEVTVLVSILKDKD- 330

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             R  M +   +++   I+T   DNPR+   +++  + +     F  + + I+A   A+ 
Sbjct: 331 --RVSMFRKLNEISSCIILTSIPDNPRASTAKELY-DYVENKKDFEYEEDPIKAYNLALS 387


>gi|260776451|ref|ZP_05885346.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607674|gb|EEX33939.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 421

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 98/369 (26%), Gaps = 24/369 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +           LA
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRINGQ----DLA 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                 +   +     + S    +   L  ++L      ++    +       A      
Sbjct: 102 DEKHTEAFDFIEKQRGDISLSFFEYGTLAALRLFQTEKVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +               DD       K       +    G       +         +  
Sbjct: 162 DVSVITSLAIDHVDWLGDDINVIGYEKAGIYRSGKPAICGQPKAPSTVAAHADDIGAELY 221

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAA------------GLCIAIGIDSALVLEHLEKL 339
            + ++                   L A              L      +  L   ++ K 
Sbjct: 222 QVEIQYNYQVVDEHTWRWTHGPYELEALPIPGLPLQNAATALMALATANLDLSDINIVKG 281

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGK 398
                    +   S    I +D AH  +S E +++ I+      +I  V     D+D   
Sbjct: 282 LNSAKLPGRMQVVSTKPIIILDVAHNPHSAEYLVERIQQKYLDKKIHAVVAMLHDKDI-- 339

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
                ++   +A          PR+    ++   +  G   F    +   A + A+    
Sbjct: 340 -KATLEVLAPVASHWYPASLQGPRAASAAELCEYLPDGNDRFEAPVD---AFKAALTKAE 395

Query: 458 KQDVLVVAG 466
            +DV++V G
Sbjct: 396 AEDVILVVG 404


>gi|62182860|ref|YP_219277.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168232768|ref|ZP_02657826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168234558|ref|ZP_02659616.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194468881|ref|ZP_03074865.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194736211|ref|YP_002117356.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204927013|ref|ZP_03218215.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|224586259|ref|YP_002640058.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130493|gb|AAX68196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455245|gb|EDX44084.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194711713|gb|ACF90934.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291950|gb|EDY31300.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323678|gb|EDZ08873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205332986|gb|EDZ19750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|224470787|gb|ACN48617.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322717362|gb|EFZ08933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|46446881|ref|YP_008246.1| putative UDP-N-acetylmuramate-alanine ligase murC [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|59798298|sp|Q6MBS8|MURC_PARUW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46400522|emb|CAF23971.1| putative UDP-N-acetylmuramate-alanine ligase murC [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 454

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 78/228 (34%), Gaps = 11/228 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+  DH++ ++  +       + F   +   +      DD + K +     +
Sbjct: 169 FPYGAIVTNIDNDHLNSYENSEDVLIQSFQQFTSQISSPNHLFWCGDDTHLKFLNGIGQS 228

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGL 321
            G              +  V       +  +    K +      L G   + N     GL
Sbjct: 229 YGFGEHCN------WRISNVFQKDFNLEFDLEGNEKKYPSIKLNLIGRHNLLNGAAVFGL 282

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-IT 380
            +++ I  A +    E+   V  R E+ G          DYAH    ++  L+ IR  I 
Sbjct: 283 AMSLNISEASIRHTFERFCGVLRRCEYKG-EFENTIFLDDYAHHPTEIQTTLEGIRKAIK 341

Query: 381 SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S R+I VF      R +    + GKI  + AD   VTD     E P +
Sbjct: 342 SKRLIAVFQPHRFSRIKDCLGMYGKI-FNNADEVFVTDVYGAGETPIE 388


>gi|332977769|gb|EGK14529.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp.
           1501(2011)]
          Length = 476

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 137/430 (31%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + IA  A+ IVVSSA    +          + VV   R+   L       +G  
Sbjct: 70  GHD--SKNIAN-ADVIVVSSAIDRNNPEIQAALKAQLPVV---RRADMLGELMRYRHG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G  GK++  S +  +   +GL    +     +++  ++  L      YL   
Sbjct: 122 ----IAVAGAHGKTTTTSLLTMMMTEAGLDPTYV-IGGKLNASGKNASLG--ESRYLIAE 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                +  +T   + A                    TN+ +DH++ +        A    
Sbjct: 175 ADESDASFLTLHPMAA------------------IVTNIDQDHMETYGNSFDKLKAAYIQ 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + +P    A++  DD     ++              +        +V          +
Sbjct: 217 FLQNMPFYGLAVVCGDDKELYSMIDDIGRPVLTYGFEPHNNVQATDVRVEGTKTHFT-VL 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +       +PG+  V NAL A  +    G+D   +   L K   V  RFE      
Sbjct: 276 RKDHEPLQLTLNIPGQHNVLNALAAITMATDEGVDDEAIKRALAKFAGVGRRFEQQACVK 335

Query: 354 RGGRI---YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           +         DY H    +   +K  R     R +V+        + +        +   
Sbjct: 336 KDEGDVLLIDDYGHHPVEVAATIKAARESYPERRLVMLFQPHRYTRTRDCYDDFVAVLSQ 395

Query: 409 LADIAIVTDDNPRSEDP------EKIRAEII---HGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             D  ++ D     E P      + +   I       P  I+K     A++    +L   
Sbjct: 396 -VDELMLLDVYSAGETPIVGADTKSLARSIRLRGEVEPMVIDKDELAPAMQR---ILKAG 451

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 452 DILITQGAGN 461


>gi|306820583|ref|ZP_07454214.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551400|gb|EFM39360.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 130/425 (30%), Gaps = 47/425 (11%)

Query: 56  GH--LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    I   I +    +V ++A    +          I +V+ +  FL           
Sbjct: 51  GHNKDHITSDIDK----VVFTAAVKQDNEEIIKTKELGIDLVERSV-FLGSIMKEY---- 101

Query: 114 PENILAVTGTSGKSSVASFVQ-QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            EN +A+ GT GK++  S +     +     +  IG          +   +        +
Sbjct: 102 -ENSIAIAGTHGKTTTTSMITLVFDKAEKNPTSLIGGMFKNIGGNVEIGNSDIFISEACE 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            +                                   TN+  DH+DY +      N+   
Sbjct: 161 YVDSFLQFYPKV----------------------AVITNIEEDHLDYFEDLSQIKNS-FL 197

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   + +    I   DD   ++ +K                  I   +           
Sbjct: 198 KFANQVKEGGFVIANGDDENVRDTLKDCKRNVYYYGFNEGNDFIIDNLEFDDFGYPCFDI 257

Query: 293 ISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                     ++   + G+  VYNA  A      + I+   +   +EK   V  RFE++G
Sbjct: 258 FYANDGVLIDNYKLNVFGKHNVYNATSAIVSACMLDIEKEDIKNAIEKFTGVGRRFEYIG 317

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409
               G R++ DYAH    ++  L  I+++   R   +F      R +       +   + 
Sbjct: 318 -EKDGVRVFDDYAHHPTEIKSTLDAIKSLKKNRFFSIFQPHTYTRTKALFKEFVECFDE- 375

Query: 410 ADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            DIAI  D     E  ++      +  E+           +  + ++   E  N  D++ 
Sbjct: 376 TDIAIFADIYAAREPIDETVSSSMLCDEVNRRGKDAYYFDSFDKIVQFLRENANDGDLIF 435

Query: 464 VAGKG 468
             G G
Sbjct: 436 TIGAG 440


>gi|271502147|ref|YP_003335173.1| UDP-N-acetylmuramate [Dickeya dadantii Ech586]
 gi|270345702|gb|ACZ78467.1| UDP-N-acetylmuramate [Dickeya dadantii Ech586]
          Length = 460

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 108/362 (29%), Gaps = 44/362 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +       +F    RL       +    
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYKPGFV-IGGVPGNFTVSARLGDSPFFVVEADE 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +        V  S   L  +             NL  DH D     +A         
Sbjct: 162 YDCAFFDKRSKFVHYSPRTLILN-------------NLEFDHADIFDDLKAIQ-----KQ 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L +  P             +K+  + GC         + +   K             
Sbjct: 204 FHHLVRLVPGKGRIIVPSHDLHLKQVMSMGCWSEQELVGEEGVWKAKKVTTDASVFQVYL 263

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    +  + L GE  ++N L+A      +G+  A     L        R E  GT   
Sbjct: 264 DDQLVGEVTWNLVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINARRRLELRGTA-H 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL--- 409
           G  +Y D+AH   ++   L  +R+   G  RI+ V        +     MG    +L   
Sbjct: 323 GVSVYDDFAHHPTAILATLAALRSKVGGTARILAVLEP-----RSNTMKMGHCKNELAPS 377

Query: 410 ---ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVL 462
              AD   +         P+ I  ++       ++       I T +EM        D +
Sbjct: 378 LGRADGVFLFQ-------PQHIPWQVSEVADACVQPAYWSADIDTLVEMVSKVAQPGDHI 430

Query: 463 VV 464
           +V
Sbjct: 431 LV 432


>gi|160873536|ref|YP_001552852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS195]
 gi|160859058|gb|ABX47592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS195]
 gi|315265766|gb|ADT92619.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS678]
          Length = 439

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 122/398 (30%), Gaps = 56/398 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  I++S   +          +  I V+ +   F    A R        ++ +TG++GKS
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L    + L         +
Sbjct: 122 TVTTLVGEMAREAGIAVAVGGNIGVP-------------ALDLLHENADL-------FVL 161

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K +  +  N+  DH+D +    AY  AK+RL+++           
Sbjct: 162 ELSSFQLET--THSLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQ----------- 208

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PL 306
                   +  R          +      +   +                +        L
Sbjct: 209 ----SRAVLFNRDDKLTVPPEPMNQNSFGLAAPEADEWGISDSKIYHGSSEIMPITEVSL 264

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N L A  L   +G+D  ++ +       +  R E VG  +    +    A   
Sbjct: 265 IGSHNHANLLAAMALVDVVGVDKQVMAKVARSFTGLSHRCEVVGIKNGVTYVNDSKATNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L  +         ++   GGD        +G     +  +  +  D        
Sbjct: 325 GATVAALDGLSDHLGD---IILIAGGDGKGADFKPLGVALAKVTHLITLGRDG------- 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               +I     G +       A+  A E+    D++++
Sbjct: 375 ---KKIAALKDGAVRVETMAAAVAKAAELATSGDIVLL 409


>gi|30264759|ref|NP_847136.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Ames]
 gi|47530235|ref|YP_021584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49187576|ref|YP_030829.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Sterne]
 gi|52140819|ref|YP_086015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L]
 gi|65322056|ref|ZP_00395015.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Bacillus anthracis
           str. A2012]
 gi|118479825|ref|YP_896976.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str.
           Al Hakam]
 gi|165869729|ref|ZP_02214387.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0488]
 gi|167634042|ref|ZP_02392365.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0442]
 gi|167637992|ref|ZP_02396270.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0193]
 gi|170685837|ref|ZP_02877060.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0465]
 gi|170705461|ref|ZP_02895925.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0389]
 gi|177651186|ref|ZP_02934017.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0174]
 gi|190568261|ref|ZP_03021169.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032962|ref|ZP_03100375.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W]
 gi|196040822|ref|ZP_03108120.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196043730|ref|ZP_03110967.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108]
 gi|218905917|ref|YP_002453751.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820]
 gi|225866676|ref|YP_002752054.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB102]
 gi|227817477|ref|YP_002817486.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. CDC
           684]
 gi|228917339|ref|ZP_04080893.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929741|ref|ZP_04092758.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228948436|ref|ZP_04110719.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093789|ref|ZP_04224888.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42]
 gi|229124255|ref|ZP_04253447.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201]
 gi|229186944|ref|ZP_04314098.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|229602579|ref|YP_002868966.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0248]
 gi|254687497|ref|ZP_05151353.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725061|ref|ZP_05186844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           A1055]
 gi|254736798|ref|ZP_05194504.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741835|ref|ZP_05199522.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Kruger B]
 gi|254754567|ref|ZP_05206602.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Vollum]
 gi|254757399|ref|ZP_05209426.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Australia 94]
 gi|300118871|ref|ZP_07056584.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1]
 gi|33301353|sp|Q81KQ2|MURC_BACAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59798169|sp|Q633A2|MURC_BACCZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222955|sp|A0RJS6|MURC_BACAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711858|sp|B7JS63|MURC_BACC0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763737|sp|C3PBF0|MURC_BACAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763738|sp|C3L9Z3|MURC_BACAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763739|sp|C1EV43|MURC_BACC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30259434|gb|AAP28622.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str.
           Ames]
 gi|47505383|gb|AAT34059.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181503|gb|AAT56879.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           Sterne]
 gi|51974288|gb|AAU15838.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus E33L]
 gi|118419050|gb|ABK87469.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis str.
           Al Hakam]
 gi|164714558|gb|EDR20077.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0488]
 gi|167513809|gb|EDR89177.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0193]
 gi|167530843|gb|EDR93545.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0442]
 gi|170129586|gb|EDS98449.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0389]
 gi|170670301|gb|EDT21041.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0465]
 gi|172083012|gb|EDT68074.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0174]
 gi|190560517|gb|EDV14494.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994391|gb|EDX58346.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus W]
 gi|196025066|gb|EDX63736.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus 03BB108]
 gi|196028276|gb|EDX66885.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus NVH0597-99]
 gi|218539138|gb|ACK91536.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH820]
 gi|225790517|gb|ACO30734.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 03BB102]
 gi|227004616|gb|ACP14359.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis str. CDC
           684]
 gi|228596498|gb|EEK54164.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|228659557|gb|EEL15205.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 95/8201]
 gi|228689674|gb|EEL43482.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-42]
 gi|228811423|gb|EEM57761.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228829920|gb|EEM75540.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842329|gb|EEM87423.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229266987|gb|ACQ48624.1| UDP-N-acetylmuramate--alanine ligase [Bacillus anthracis str.
           A0248]
 gi|298723716|gb|EFI64445.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus SJ1]
          Length = 436

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R IV         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|328474498|gb|EGF45303.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio
           parahaemolyticus 10329]
          Length = 420

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 104/367 (28%), Gaps = 21/367 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +         + + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRING----VDVE 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A    +   V     + S    +   L  +++      ++    +       A      
Sbjct: 102 DAKHCEAFDYVEKQRGDISLSLFEFGTLAALRIFQVENVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ----GKFIHLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 162 DVSVITSLAIDHVDWLGDDINVIGFEKAGIYRAGKPAICGQPLPPATVAAHADDIGAEFF 221

Query: 288 KQQVTISVEGKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +  +       +  + +              +     A  L      +  +   ++    
Sbjct: 222 QVGIQFDYALTEKGWKWSSGAFALEDLPLPSLPLPNAATALMALGASELQITDINIVNGL 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
                   +        I +D AH  +S E +++ ++T  +G+ I VV     D+D    
Sbjct: 282 NNARLAGRMQVLQHEPEIVLDVAHNPHSAEYLVEKVKTQYAGKTIHVVIAMLHDKDIKAT 341

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
               K        A +T   PR+   +++   +  G   F       EA  +A+      
Sbjct: 342 LAALKPIATHWYPASLT--GPRAATADELCQYLPQGQVQFQTPV---EAFESALSSAASN 396

Query: 460 DVLVVAG 466
           DV++V G
Sbjct: 397 DVVLVTG 403


>gi|311104878|ref|YP_003977731.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8]
 gi|310759567|gb|ADP15016.1| cyanophycin synthetase 2 [Achromobacter xylosoxidans A8]
          Length = 871

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 10/161 (6%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEM 371
           N L A G   A+ I  AL+   +E   +      ++F      G  + VD  H +++L  
Sbjct: 690 NVLAAVGAAWALDIPVALIRAGIETFDIDQADAPWQFTLFERNGSTVVVDDVHNASALRP 749

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD------NPRSEDP 425
           ++  I    S     V+  G DR        GK+  D  D  ++ DD       P  E  
Sbjct: 750 LIAAIDQFPSTTRAAVYSAGADRRDADLIEQGKLLGDAFDRVVLYDDLTVRSKRPEGESR 809

Query: 426 EKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +R  +  G  +    E+ +  +AI++ ++ +   D +++
Sbjct: 810 ALLRQGLAQGARVKDIQEEPDHGKAIQSQLDGIAAGDFVLL 850


>gi|218710689|ref|YP_002418310.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
 gi|218323708|emb|CAV20053.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
          Length = 452

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 111/358 (31%), Gaps = 33/358 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIKRQFH 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +           D A    + +   +        G       +K         Q 
Sbjct: 206 HLVRTVPGNGRIFSPKEDTAIQDVLSRGCWSETESSGEQGDWDAKKLVKDGSQFGVYFQG 265

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  V NAL+A      +G+   L  E L K      R EF G 
Sbjct: 266 ECV-----GTVDWDLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              G  +Y D+AH   ++E+ L  +R  + + +II V          KR   G     LA
Sbjct: 320 EVAGVSVYDDFAHHPTAIELTLGGLRNKVDTKKIIAVLEPRS--ATMKR---GVHKETLA 374

Query: 411 DIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
           D  +   D+     P+ I     ++           + ++A +   +      D ++V
Sbjct: 375 DSLMQ-ADSTYLFQPDNIDWSVQDVADACHQPAHVSDDMDAFVAKIVSEAQAGDQILV 431


>gi|118594248|ref|ZP_01551595.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophilales bacterium HTCC2181]
 gi|118440026|gb|EAV46653.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophilales bacterium HTCC2181]
          Length = 453

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 99/344 (28%), Gaps = 28/344 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           H + +LAV GT GK++  + +  I + +G        G     SS A+    T+ +    
Sbjct: 101 HDKWVLAVAGTHGKTTTTAMLAWILESNGLAPGYLIGGVPGNFSSSARIPDNTSKNAPSF 160

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
               +            +  S  +  H             NL  DH D     +      
Sbjct: 161 FVIEAD----EYDTAFFDKRSKFVHYH------PRTLILNNLEFDHADIFDDLEHIKKHV 210

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             L   +             A  + +     +                  K         
Sbjct: 211 HHLVRTIPEHGRIICNAESRALEETIKMGLWSEIEYFSHDKEWSYQWQEDKQSID----- 265

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                  K     + L G     NAL A      +G+  A  ++ L     V  R E + 
Sbjct: 266 -IFYQAKKQGSLTWNLIGHHNASNALAAIAAARHVGVSPAQSIQALSSFKGVKKRMEKIA 324

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL- 409
               G +IY D+AH  ++++  LK +        IVV             +   + + L 
Sbjct: 325 QLKNGVQIYDDFAHHPSAIQTTLKGLNQTKKSGRIVVVIEPRSNTMKLGSMKTDLLMSLE 384

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE---KGNRIEAI 449
            AD      +N   +       ++  G P  I      +  +AI
Sbjct: 385 VADQVYCYTNNLTWD-----AHKLFKGYPKAIVSDNINDIAQAI 423


>gi|15602794|ref|NP_245866.1| hypothetical protein PM0929 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721249|gb|AAK03013.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 457

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 75/236 (31%), Gaps = 7/236 (2%)

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     + +  PA        ++  +K   + GC               +  +    Q  
Sbjct: 204 QRQFHHMIRTMPASGRILSVANEPNVKATLDMGCWSQQQFLGQDQDWYAERISHDCTQFG 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K  +  + + G+  ++NAL+A      +GI  A   + L        R E  G 
Sbjct: 264 VFYQGEKMAEVYWNVVGQHNMHNALMAIAAAHHVGISIAEACQALATFISPKRRLEVKGQ 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQ-GKRPIMGKIALD 408
              G  +Y D+AH    +   L  +R    G  RI+ V     +  + G        AL 
Sbjct: 324 -VNGITVYDDFAHHPTEILATLTALRDKVGGGVRILAVLEPRSNTMKMGVHKDEIAPALG 382

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +        D   I ++    +   +   N  + +    +     D ++V
Sbjct: 383 RADNVFLFQPENIGWDVVDIVSQ---CVQPAVWNMNLDKLVEMIADEAKPTDHILV 435


>gi|301056196|ref|YP_003794407.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus anthracis CI]
 gi|300378365|gb|ADK07269.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 436

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R IV         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|260900699|ref|ZP_05909094.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308110245|gb|EFO47785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 452

 Score = 50.3 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 111/355 (31%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R      +      +       K+    +K  V
Sbjct: 205 HHLVRTVPGNGLILAPKQDQALADVLERGCWTEKQF---SGEDGDWQAHKLVLDGSKFDV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 ALQGE-KVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGE 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++E+ L  +R     + I+           +      +A  L  
Sbjct: 321 EQ-GITVYDDFAHHPTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + I  +            +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPDNIEWSVQDIADQCKQ---PAFVDADIDNFVAKIVERAQPGDQILV 431


>gi|319440257|ref|ZP_07989413.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium variabile
           DSM 44702]
          Length = 499

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 64/178 (35%), Gaps = 21/178 (11%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NA  A      +G D   V++ +     V  RFE+ GT   G  +Y DYAH  
Sbjct: 310 PGRHMLLNATAAVLAGGLVGSDLDEVIDGVAAFDGVRRRFEYHGTAG-GVEVYDDYAHHP 368

Query: 367 NSLEMILKNIRT---------ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVT 416
             +  +L   R            +GR+I VF      R         +    LAD A+V 
Sbjct: 369 TEVRAVLSAARDKVAARAAADGVAGRVIAVFQPHLYSRTITFAEEFAESLS-LADTAVVL 427

Query: 417 DDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           D     EDP +      I   +   +       +  E      E+    DV++  G G
Sbjct: 428 DIYGAREDPVEGVTSRIITDRMTVPVVYEERFSDVPE---RVAEVARPGDVVLTVGAG 482


>gi|315283075|ref|ZP_07871346.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria marthii
           FSL S4-120]
 gi|313613283|gb|EFR87156.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria marthii
           FSL S4-120]
          Length = 461

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 93/282 (32%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDF 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 227 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGARD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 279 NILLPGEHNLENVLASVAVAKTLGVSNEEIMRVLETFKGVEHRTQFVVEWQGRKFYNDSK 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++       + I          
Sbjct: 339 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------G 386

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               +   A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|312880220|ref|ZP_07740020.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
 gi|310783511|gb|EFQ23909.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
          Length = 462

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 115/348 (33%), Gaps = 34/348 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L VTG++GK++  S +  + +  G+     G                         L+  
Sbjct: 112 LGVTGSNGKTTTTSLIGHLLREEGVRVSVAGNIGNP--------------------LASA 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
             +    V  E SS  L   R   ++      TNL  DHID+H + +AY +AK  L   L
Sbjct: 152 VREEAEWVVAELSSFQLHWARR--LRCSLAVVTNLAPDHIDWHGSYEAYVDAKANLVRAL 209

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
            P    AI+   +      + +           G +G    ++                 
Sbjct: 210 DPTTGMAIVQRSELPLLPPVSQTIPLSWTEDGEGEEGGVTLIRSRREALLSFPGLGKRRL 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
             FD L  L        A+ A    + +      V E L +    P R + V    +   
Sbjct: 270 FSFDALSLLGDHNLENAAMAATATTLVLKDAPKHVEEALTRFVAPPHRCQLVRELGKVRF 329

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           +          +   +  + ++   ++I++ G G     G    + K   + A  A++  
Sbjct: 330 VDDSKGTN---VAATMTALTSLPGTKVILLGGQGKGESYG---SLAKAVTEWARFAVL-- 381

Query: 418 DNPRSEDPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E+ E+I   +   G   +    +  EA+  A +     D +++
Sbjct: 382 ---FGEEGERIGKALDDAGYHRWSLVRSLNEAVPLAYDKAEAGDSVLL 426


>gi|16767662|ref|NP_463277.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167551340|ref|ZP_02345095.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167991193|ref|ZP_02572292.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197248271|ref|YP_002149331.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263966|ref|ZP_03164040.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|200389114|ref|ZP_03215726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|238910573|ref|ZP_04654410.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|16422979|gb|AAL23236.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197211974|gb|ACH49371.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242221|gb|EDY24841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|199606212|gb|EDZ04757.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205323947|gb|EDZ11786.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330336|gb|EDZ17100.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249506|emb|CBG27371.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996754|gb|ACY91639.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160903|emb|CBW20435.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915513|dbj|BAJ39487.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222618|gb|EFX47690.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615578|gb|EFY12498.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618638|gb|EFY15527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322621949|gb|EFY18799.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627673|gb|EFY24464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630980|gb|EFY27744.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637801|gb|EFY34502.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643966|gb|EFY40514.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650959|gb|EFY47344.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656789|gb|EFY53077.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659787|gb|EFY56030.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662002|gb|EFY58218.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666249|gb|EFY62427.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672669|gb|EFY68780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676099|gb|EFY72170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680583|gb|EFY76621.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684523|gb|EFY80527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132753|gb|ADX20183.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192838|gb|EFZ78064.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197286|gb|EFZ82426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201597|gb|EFZ86661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206111|gb|EFZ91073.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213119|gb|EFZ97921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215493|gb|EGA00237.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219478|gb|EGA03963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227781|gb|EGA11935.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228951|gb|EGA13080.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236437|gb|EGA20513.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241891|gb|EGA25920.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247960|gb|EGA31897.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251402|gb|EGA35273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258232|gb|EGA41909.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263622|gb|EGA47143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265782|gb|EGA49278.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270226|gb|EGA53674.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|332991227|gb|AEF10210.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 459

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|293366852|ref|ZP_06613528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319153|gb|EFE59523.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 454

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 120/355 (33%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + Q+S L+    G    ++S                   
Sbjct: 116 APIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGYVASKV----------------- 158

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 159 -AQEVKSDEYLITELSSFQLL--GIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +           Q       K   I       I+
Sbjct: 216 KNQTKDDYLICNY----HQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRIIN 271

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L       N L A    I  G+    +++ L     +  R +++GTN  
Sbjct: 272 TKDLVLPGEHNL------ENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTNRT 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +         I+    G DR                D  I
Sbjct: 326 NKYYNDSKATNTLATQFALNSFDQ-----PIIWLCGGLDRGNEF------------DELI 368

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  +K            I+  +  +A+    +++   DV+++
Sbjct: 369 PYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 423


>gi|258404872|ref|YP_003197614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797099|gb|ACV68036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 444

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 113/361 (31%), Gaps = 64/361 (17%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS    +    I+AVTG++GK++  + +  I + +G   F  G               
Sbjct: 105 ELASWFVNEP---IVAVTGSAGKTTTTTLIAHILETAGRRVFSGGNLG------------ 149

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           TP           L+      + +E SS  L                N+  +H+DYH+  
Sbjct: 150 TPLS------EYVLAQDQADVLVLEVSSFQLV--HASSFHPKVAVLLNVAPNHLDYHEEM 201

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK++LF +  P +     YA                                 + 
Sbjct: 202 EAYVLAKLKLFAKQQPGDLAIAPYALKE-----------------------------DLE 232

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           + H      +     D      LPGE    N   A   C  +G+D   V E L       
Sbjct: 233 SRHFSAADRVYFVPNDRFSCPQLPGEHNQANIEAAYLACRYLGVDEQAVAEALASYQPQA 292

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R + VGT +    +    A T  SL+  L++          +V   GG    G   ++ 
Sbjct: 293 HRLQIVGTWNGVKVVDDSKATTIESLQAALRSFEE------PIVLLAGGQFKGGDPSLVA 346

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            +        ++  DN        +      G+          +A+          DVL+
Sbjct: 347 DLIRTRVKEVVLFGDN------RDVFESAWQGLAPMRWFPTLEDAVDHGATTTQSGDVLL 400

Query: 464 V 464
           +
Sbjct: 401 L 401


>gi|312173524|emb|CBX81778.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 438

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 132/400 (33%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + ++ +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPSLMAAAIAGVEIIGDVE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ Q +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMAQAAGWQVGVGGNIGLP-------------VLTLLQQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R   +   A +  N+  DH+D +      + A       +    +  ++ 
Sbjct: 158 ELSSFQLETTR--SLHAAAATILNVTEDHMDRYPLGMQQYRAAK---LRIYENATVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V             VG          +        + +  E         L 
Sbjct: 213 ADDAMTIPVRGADARCLSFGADVGDYH-------LTRQQGSTWLRVQGEKVLNTDEMHLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L  L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLTALTTFKGLAHRFQLVHEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +    +G + ++ G  G   D     R + G       D   +        +
Sbjct: 326 STEAALNGL--HPAGILWLLLGGDGKSADFSPLTRYLQG-------DRIRIYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI       ++      A+R     +   D++++
Sbjct: 377 LAALRPEI------AVQTETMAAAVRQIATRVQPGDLVLL 410


>gi|300114771|ref|YP_003761346.1| UDP-N-acetylmuramate [Nitrosococcus watsonii C-113]
 gi|299540708|gb|ADJ29025.1| UDP-N-acetylmuramate [Nitrosococcus watsonii C-113]
          Length = 463

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFA--SRLYGK--HPENI 117
           AI +G  A  +    +L      +    P   V++     LS  +    L  +      +
Sbjct: 48  AIREGYSAAALDPPPNLVVIGNALSRGNP--AVEHVLAQGLSYISGPQWLAEQILQGRWV 105

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LAV GT GK++ +S +  I + +G     +       +F    RL              +
Sbjct: 106 LAVAGTHGKTTTSSLLAWILEYAGHRPGYL-IGGVPQNFGISARLG-------RSPYFVV 157

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +        +  S  +        +       NL  DH D     +A    +       
Sbjct: 158 EADEYDTAFFDKRSKFIHY------RPRTLILNNLEYDHADIFPHLEAIQQ-QFHYLVRT 210

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +P     ++ + D     V+          + +             A             
Sbjct: 211 VPNNGLILVPSGDKALATVLNMGCWTPVMNMDIAGGISSALAASAVADDGSDFEVWYENS 270

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                 +PL G   V N L A G     G+      + LE+   V  R E  G    G  
Sbjct: 271 CQGRVRWPLLGHHNVANGLAAIGAAHHSGVPIDQACQALERFQGVRRRLEIYG-KVNGVT 329

Query: 358 IYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIV 415
           IY D+AH   ++   L  +R  +   RII V     +  + G        AL LAD  ++
Sbjct: 330 IYDDFAHHPTAISKTLAGLRARVGKARIIAVLEPRSNTMKLGIHKDSLAPALALADRVLI 389


>gi|292489359|ref|YP_003532246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
 gi|292898417|ref|YP_003537786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291198265|emb|CBJ45371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291554793|emb|CBA22618.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
          Length = 438

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 132/400 (33%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + ++ +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPSLMAAAIAGVEIIGDVE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ Q +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMAQAAGWQVGVGGNIGLP-------------VLTLLQQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R   +   A +  N+  DH+D +      + A       +    +  ++ 
Sbjct: 158 ELSSFQLETTR--SLHAAAATILNVTEDHMDRYPLGMQQYRAAK---LRIYENATVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V             VG          +        + +  E         L 
Sbjct: 213 ADDAMTIPVRGADARCLSFGADVGDYH-------LTRQQGSTWLRVQGEKVLNTDEMHLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L  L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLTALTTFKGLAHRFQLVHEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +    +G + ++ G  G   D     R + G       D   +        +
Sbjct: 326 STEAALNGL--HPAGILWLLLGGDGKSADFSPLTRYLQG-------DRIRIYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI       ++      A+R     +   D++++
Sbjct: 377 LAALRPEI------AVQTETMAAAVRQIATRVQPGDMVLL 410


>gi|227833698|ref|YP_002835405.1| dihydrofolate synthase / folylpolyglutamate synthase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262184705|ref|ZP_06044126.1| dihydrofolate synthase / folylpolyglutamate synthase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227454714|gb|ACP33467.1| dihydrofolate synthase / folylpolyglutamate synthase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 509

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+      ++D  H  +  + +   + R     R+I V     D+D     I
Sbjct: 366 PGRLERVRTSPT---TFLDACHNPHGAKALAAALDRDFDFARLIGVVSIFTDKDAAG--I 420

Query: 402 MGKIALDLADIAIVTDDNPRSEDP---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           +  +   L ++ I  + +PR+ D     ++  +I  G      + +   A   A+E+   
Sbjct: 421 LTALESVLTEVVITQNTSPRARDAYELAELARDIF-GEERVYVEPDLPSAYTQAVELAED 479

Query: 459 QDV-----LVVAG 466
            DV     +V+ G
Sbjct: 480 ADVQSGSGIVITG 492


>gi|289765200|ref|ZP_06524578.1| folylpolyglutamate synthase [Fusobacterium sp. D11]
 gi|289716755|gb|EFD80767.1| folylpolyglutamate synthase [Fusobacterium sp. D11]
          Length = 415

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 113/360 (31%), Gaps = 25/360 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQDNRLTTPS-- 166
           ++   ++ +TGT+GK SV++ V++I   +G    +             + +++  +    
Sbjct: 40  QNSYKVIHITGTNGKGSVSTTVERILLEAGYKVGKYTSPHILEFNERISFNDKYISNEDV 99

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I      +         +         D   L+         TN+  D+I
Sbjct: 100 AKYYEKVKKIIDEHNIQATFFEVTTAMMFDYFKDMKADYVILEAGMGGRYDATNIC-DNI 158

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               T  +  + +          +  A I  +  Y+               +       +
Sbjct: 159 VSVITNVSLEHTEYLGDTIYKIAKEKAGIIKNCPYTIFADNNPDVKKAIEEATDKYVNVL 218

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K    +       +    + +           Y   + A   +        +++   
Sbjct: 219 EKYKNSTYNLDFNTFSTNIFINGNKYEYSLFGDYQYKNFLCAYEVVKYLGIDENIIKEAV 278

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQ 396
           K  V   RFE     S+   +  D AH    +E + K ++   S   + V      D+D 
Sbjct: 279 KKVVWQCRFEVY---SKNPLVIFDGAHNLAGVEELTKIVKQHFSKDEVTVLVSILKDKD- 334

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             R  M +   +++   I+T   DNPR+   +++  + +     F  + + I+A   A+ 
Sbjct: 335 --RVSMFRKLNEISSCIILTSIPDNPRASTAKELY-DYVENKKDFEYEEDPIKAYNLALS 391


>gi|330685887|gb|EGG97516.1| Mur ligase middle domain protein [Staphylococcus epidermidis
           VCU121]
          Length = 686

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 106/366 (28%), Gaps = 38/366 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+  +     ++        P L+V ++ K     A  +  ++   ++A+TG+ GKSS 
Sbjct: 77  LIITETYVEGLEYK------IPQLIVQDSIKAFKTLAIYIRNQYKNPVIAITGSMGKSST 130

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                 + +   +   +                     I  A   + L      + +V  
Sbjct: 131 RMLTASLLKDYPIQENRGNNN-----------------IRAAIYANMLKLIKNPYFAVIE 173

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN--AKMRLFEELLPKESPAIIY 247
           +S     HR +    +      +      +  T  +              L +   AII 
Sbjct: 174 TSLNAINHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAIIN 233

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK---VCAIHNKQQVTISVEGKDFDFLF 304
            D  ++  ++ +AH     V +           K   +  +    ++ I V G+  ++  
Sbjct: 234 GDTMFADYLIDQAHQYTQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNYQI 293

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
               +  + N L A  +   + I       +  +      +              +D  H
Sbjct: 294 NTFSDGMISNTLAAILILKNLNIPVKAEYLYNFEPFSKILKM-KEIQTPTHKTTLIDDTH 352

Query: 365 T-----SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR----PIMGKIALDLADIAIV 415
                   +             G  I+  G   D     R     ++  ++   AD  + 
Sbjct: 353 NASLPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYILC 412

Query: 416 TDDNPR 421
            DD+ R
Sbjct: 413 LDDDLR 418


>gi|292490625|ref|YP_003526064.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579220|gb|ADE13677.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 476

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 128/401 (31%), Gaps = 40/401 (9%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           +D      +   ++ V    + L+      YG      +AV GT GK++  S +  I   
Sbjct: 87  EDNPEVSAARRRLIPVVPRAEMLAELMRFRYG------IAVAGTHGKTTTTSLIAGILGE 140

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
            G     +     ++S   + RL +   +      S  S                     
Sbjct: 141 GGFDPTFV-IGGRVNSIGANGRLGSGEYLVAEADESDASFLH------------------ 181

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++ +    TN+  DH+  +        A    F   LP    A++  +D   +E++  
Sbjct: 182 --LQPLLAVVTNVDADHMGTYGGDFTALKAAFLEFLHHLPFYGLAVVCLNDPVLRELLPD 239

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                    +       +   K      + +V           +  LPG     NAL A 
Sbjct: 240 IGRPVLTYGTCEDADYRLRELKHVQGRTQFRVARPGNDNWLTVVLNLPGAHNALNALAAM 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---YVDYAHTSNSLEMILKNI 376
            +   +G + A +   LE    +  RF+  G  +          DY H    L   L+ +
Sbjct: 300 VVAHELGAEDAAIQRALEGFSGIGRRFQCYGEIATPRGRVLLVDDYGHHPRELTATLEAL 359

Query: 377 RTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA---- 430
                GR +VV        R +       + AL LAD+ ++ +  P  E+P         
Sbjct: 360 HAGWPGRRVVVVFQPHRYTRTRDLFEDFIE-ALSLADVLLLLEVYPAGEEPIAGADSRTL 418

Query: 431 --EIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              I   G    I   +        + +L + DVL+  G G
Sbjct: 419 GQAIRANGHVDPIGVEDMETIEEVLLGVLQEGDVLLTLGAG 459


>gi|256832307|ref|YP_003161034.1| UDP-N-acetylmuramate/alanine ligase [Jonesia denitrificans DSM
           20603]
 gi|256685838|gb|ACV08731.1| UDP-N-acetylmuramate/alanine ligase [Jonesia denitrificans DSM
           20603]
          Length = 492

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 88/289 (30%), Gaps = 33/289 (11%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D++ ++ A++ A    F + +      I  ADDA +  +  R    G +V
Sbjct: 186 VVTNIEPDHLDHYGSEDAFYRA-FDEFADQVVPHGWLIACADDAGAYALAHRQEQHGRQV 244

Query: 268 LSVGYQ--------GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA- 318
           L+ G                  +  +               +   P      +   L   
Sbjct: 245 LTYGRHPSADIRVLESHPQHPGISQVMTVTVPRNLPRTGTRNTTNPENATTTLTIQLAVP 304

Query: 319 -----------AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                          + +G         L        RFE          +   YAH   
Sbjct: 305 GEHNALNAAAALATVMVLGASPQEAAHALSAFMGTGRRFELRAVVGDVTVVDD-YAHHPT 363

Query: 368 SLEMILKNIRTIT-SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +   L     +  +GR++ +F      R +         AL  AD+AIVTD     E P
Sbjct: 364 EVAAFLSAASNVAGTGRVLALFQPHLYSRTRTFANEFA-TALQGADVAIVTDIYGAREQP 422

Query: 426 EK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   I   +          G+RI+A +    +    D++   G G
Sbjct: 423 AAGVTSQLITDNLAP--QQGAYIGDRIQAAKHLARIAQPGDLIATIGAG 469


>gi|52786856|ref|YP_092685.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|163119604|ref|YP_080271.2| UDP-N-acetylmuramate--L-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|319647385|ref|ZP_08001607.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. BT1B_CT2]
 gi|59798182|sp|Q65G22|MURC_BACLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52349358|gb|AAU41992.1| MurC [Bacillus licheniformis ATCC 14580]
 gi|145903114|gb|AAU24633.2| UDP-N-acetyl muramate-alanine ligase [Bacillus licheniformis ATCC
           14580]
 gi|317390732|gb|EFV71537.1| UDP-N-acetylmuramate-L-alanine ligase [Bacillus sp. BT1B_CT2]
          Length = 432

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 124/405 (30%), Gaps = 63/405 (15%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+     +         P++      KFL  +  +         +AVTG  GK+S
Sbjct: 64  VIAGNAFPDTHPEIEKAQAEGLPVVR---YHKFLGDYLKKFTS------IAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + +++  +S+ IG  +       +        +   +   +  S    +  + 
Sbjct: 115 TTGLLSHVIKKAKPTSYLIGDGTGKGCENSEY-----FVLEACEYRRHFLSYQPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY       F+A        L      I   
Sbjct: 169 ---------------------TNIDFDHPDYFANIDDVFDAFQ---TMALQVNKGIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD Y   +MK   N          +  F     +                   F  P  G
Sbjct: 205 DDEY---LMKIHANVPVVYYGFAEENDFQARNVIKNTEGTTFDVFVRNTFYDTFYIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC    +D  ++ E L+    V  RF      S+   +  DYAH    
Sbjct: 262 SHNVLNALAVIALCHYEQVDVDIIKEGLQTFGGVKRRFNEKHAGSQ--VLIDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           + + ++  R     R IV         R Q       + +L  AD   + D         
Sbjct: 320 ITVTIEAARQKYPERDIVAVFQPHTFTRTQSFLNEFAE-SLKKADYVYLCD--------- 369

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471
            I           +  G+  E I  A +++++ D  ++  K HE 
Sbjct: 370 -IFGSARENAGK-LTIGDLQEKIPQA-KLIDENDTSIL--KEHEN 409


>gi|166363698|ref|YP_001655971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Microcystis
           aeruginosa NIES-843]
 gi|189082911|sp|B0JRM9|MURD_MICAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166086071|dbj|BAG00779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcystis
           aeruginosa NIES-843]
          Length = 449

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 130/397 (32%), Gaps = 41/397 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
            S   +L   S  +  + PIL+   +     +               L +TGT+GK++  
Sbjct: 62  ASDLPNLIVVSPGVPWDAPILITAREKGIDTIGELELAWRYLQSSPWLGITGTNGKTTTT 121

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    I Q++GL++   G     +                      L +     +  E S
Sbjct: 122 ALCAAIFQKAGLNAPSCGNIGYAACEL------------------ALKADKYDWIIAEIS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++  R   +    G +T    DH+  HQT + Y+  K  L    L +    I+  DD
Sbjct: 164 SYQIESSR--DLSPKIGIWTTFTPDHLSRHQTLENYYQIKASL----LQRSDRQILNGDD 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
            Y +++              G         +   + +   V         +    + G  
Sbjct: 218 PYLRQIGVSQWQQAYWTSVQGKAALLGDPSRGVYLQDNWIVAFGELIAPVNL-LKMVGSH 276

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L+A       GI+   + E +     V  R E+V T      I    A   ++  
Sbjct: 277 NQQNLLMAVAAARLAGIEKKAITEAIATFPGVAHRLEYVCTYKGLDFINDSKATNYDAAA 336

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + L+++ +       ++   G  +    R  + +I   +A + ++       +       
Sbjct: 337 VGLQSVPS-----PAILIAGGEAKAGDDRAWIAEIKAKVATVLLI------GDAAADFAR 385

Query: 431 EII-HGIPGFIEKGNRIEAIRTAIEM--LNKQDVLVV 464
            +   G   +        A++ A E+    +  V+++
Sbjct: 386 RLQSAGYQDYECVETMDRAVQRAAELGPAKEAKVVLL 422


>gi|163750924|ref|ZP_02158157.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella benthica KT99]
 gi|161329348|gb|EDQ00345.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella benthica KT99]
          Length = 478

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 105/362 (29%), Gaps = 22/362 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LA++GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 105 KDRWVLAISGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSAFFVVEAD 164

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +         S     Q R   I  +     ++  D     +          
Sbjct: 165 EYDSAFFDKR--------SKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFHHVIRTVP 216

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-------GYQGKFIHLKKVCA 284
              + + PK+S A+    D       +           +           +     K+ A
Sbjct: 217 GEGKIIWPKDSEAVQQVIDMGCWSEQETYARHSDSDSGIVSGKGSSAADNQGTWSSKLIA 276

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
               Q              + L G+  V NA +A      +G+     ++ L +      
Sbjct: 277 ADGHQFELFLDGESQGILDWSLIGQHNVENATMAIAAARHVGVKPESAIQALTQFEPPKR 336

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR--DQGKRPIM 402
           R E +G    G  +Y D+AH   ++   L+  R       I +           G     
Sbjct: 337 RMELIG-EVNGIEVYDDFAHHPTAIATTLQGCRAKVGEAKITIILEPRSNTMKSGVHKDT 395

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              ++ LAD A +   +    D   I A +           +  E +          D +
Sbjct: 396 LAGSMSLADQAYLYQADSIDWD---IEAAMAKAELPVSVLYDIDEIVDAVASKAKSGDTI 452

Query: 463 VV 464
           ++
Sbjct: 453 II 454


>gi|146310298|ref|YP_001175372.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           sp. 638]
 gi|145317174|gb|ABP59321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter sp.
           638]
          Length = 438

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 135/404 (33%), Gaps = 66/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S  ++L   S +  ++  + +V +              +    ++A+TG++GKS
Sbjct: 66  ADLIVASPGFALAHPSLSAAADAGVEIVGDIE--------LFCREAQAPVIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L      L         +
Sbjct: 118 TVTTLVGEMAKAAGINVGVGGNIGLP-------------ALMLLDQDREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLHAVAATILNVTEDHMDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGINMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR------ 421
           S E  L  +R    G + ++ G             GK A   +    +T D  R      
Sbjct: 326 STEAALNGLR--VDGTLYLLLGGD-----------GKSADFSSLKPYLTGDKIRLYCFGR 372

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +   +R EI        +     +AIR     +   D++++
Sbjct: 373 DGAELAALRPEI------ATQTETMEQAIRLIAPAVQPGDMVLL 410


>gi|229087237|ref|ZP_04219383.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44]
 gi|228696079|gb|EEL48918.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-44]
          Length = 436

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    S+         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMSQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYYPDYAIMTNIDFDHPDYFTDVNDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIQDLQQRIDGAELITD 398


>gi|298694474|gb|ADI97696.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 449

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 123/355 (34%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +       + I+    G DR                D  I
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEF------------DELI 363

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      +   K            IE  N  +A+    +++   DV+++
Sbjct: 364 PYMENVRVMVVFGQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 418


>gi|218134982|ref|ZP_03463786.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990367|gb|EEC56378.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
          Length = 526

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 100/304 (32%), Gaps = 21/304 (6%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTG+ GK+SV  ++Q + Q               +         TP  +      S
Sbjct: 183 KVIGVTGSYGKTSVKFYLQTLLQE------------KYNVLVTPESFNTPMGVVRTIRGS 230

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S+  +    + A   G  +   D +    G  T++G  H++     +   N K  L +
Sbjct: 231 LRSTHEIFICEMGARHVGDIKEICDIVHPDYGIITSIGPQHLETFFNMENIKNTKFELAD 290

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            L       +    D    +   + +       + G    +       +    +    + 
Sbjct: 291 ALPDDG--ILFLNGDNEYIQDKAKDYKNKVFYFAQGSGNGYCASDIAVSQLGTEFTMTAP 348

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +G   +F   L G   V N   A      +GI  + +   + ++  VP R +       G
Sbjct: 349 DGTTENFQMRLIGAHNVINVAGAIAAANTLGIPLSDLKIPVRRIQPVPHRMQ---MREHG 405

Query: 356 GRIYVDYAHTSNSL-EMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLAD 411
               +D A+ SN +          +  G  I++       GD+++      G  A D  D
Sbjct: 406 QVTIIDDAYNSNPVGSKAAVETLAMFDGIRILITPGMVELGDKEKEYNYKFGTYAADCCD 465

Query: 412 IAIV 415
             ++
Sbjct: 466 YILL 469


>gi|67459026|ref|YP_246650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           felis URRWXCal2]
 gi|75536538|sp|Q4ULT8|MURD_RICFE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|67004559|gb|AAY61485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia felis
           URRWXCal2]
          Length = 449

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 117/386 (30%), Gaps = 48/386 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L    A I  N  I ++ +                  N +AVTGT+GKS+  
Sbjct: 67  IVLSPGIPLTHKIAGIAKNFNIPIISDIDLL-------FEKSKNLNFIAVTGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                          +  +        +E S
Sbjct: 120 ALISHILNSNGLDYPVAGNIGVP---------------------ALQAKASKDGYILELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +           N+  DH+D HQ    Y  AK ++F+ +      AI   + 
Sbjct: 159 SFQLDL--VKTFTAKIAVLLNITPDHLDRHQDMTGYIAAKSKIFDRMDKDSYAAINIDNY 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +  M        +++         +   V                   F   L G  
Sbjct: 217 YCREIFMLLQQEQRIKLIPFSVTKILKNGISVVGDKINDNDISY----KLPFNKNLQGTH 272

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N   +  +   IG++S  +LE +     +P R +++G+ +  G      A  + S  
Sbjct: 273 NCENIAASYAVAKIIGVESKKILESISSFQSLPHRMQYIGSINNIGFYNDSKATNAISAV 332

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +K +  I     +          +  +P   KI                    ++I A
Sbjct: 333 QSIKALDNIYW---LAGGIPKEGGIEEIKPYFSKIKKAYF-----------YGQAKEIFA 378

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEML 456
           +    I  F+   N  +A   A +  
Sbjct: 379 KTAKNIVDFVICDNLEQAFDLAYKDA 404


>gi|196230910|ref|ZP_03129771.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chthoniobacter
           flavus Ellin428]
 gi|196225251|gb|EDY19760.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chthoniobacter
           flavus Ellin428]
          Length = 445

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 96/283 (33%), Gaps = 27/283 (9%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
            +  +++E SS  L+  R    +     +     DH+D +++   Y+ AK+R+FE     
Sbjct: 160 HLDVMTLEVSSFQLESIRRFHCQT--SVWLGFAADHLDRYRSMDEYYVAKIRIFENQTED 217

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +  AI+   D       K+   +              ++        +  +    E    
Sbjct: 218 DW-AIVNYRDKLPALKAKKITFSA-------------YVPDGDFSLREGVIHFRGERVLA 263

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                L G     N +   G+    G+  A +L  L +   +P R E + T +    +  
Sbjct: 264 MSETNLRGSHNAENLMATLGVGFVRGLSFAQMLPPLREYKPLPHRCEILRTVNGAEWVND 323

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
                 +S+E  L      +  R +V+   G D+      ++  +        +V     
Sbjct: 324 SKGTNPDSVEKAL-----HSETRPVVLIAGGKDKGFEY-DLLTDLVAARCRSVVV----- 372

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             E  ++I A     +P      +  +A+  A       DV++
Sbjct: 373 MGEMADRIEAIWKSRLPVANAGRSLEKAVELAHAAAQPGDVVL 415


>gi|116334052|ref|YP_795579.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis ATCC 367]
 gi|116099399|gb|ABJ64548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           brevis ATCC 367]
          Length = 474

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 140/404 (34%), Gaps = 57/404 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLS---------LFASRLYGKHPENILAVTG 122
           ++   Y L   +  I  + P++      + L+           AS +       ++AVTG
Sbjct: 83  LLDPGYDLVVKNPGIFYDVPVVK-----RALADKVPVISEMELASEVAE---AELIAVTG 134

Query: 123 TSGKSSVASFVQQI--CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           ++GK++  + +Q++    R    +   G     +S                      +  
Sbjct: 135 SNGKTTTTTMIQKMVDHDRRAGKAVYAGNIGIPASRV------------------AQAVT 176

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
               + +E SS  L               TN+  +H+DYH+T++ Y  AKM++       
Sbjct: 177 ADDTLVLEVSSFMLV--GTTTFHPHIAVLTNIFSNHLDYHKTRENYVAAKMKITANQTAD 234

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   + +      +E+ +++                 +          +++  + + K  
Sbjct: 235 DYFVVNFDS-PELRELSEQSAAQVVPFSREARSQAGAYELNGDLYFKDEKLMAASDIK-- 291

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG+  V NAL A  +    G+ +A ++  L     V  R ++V           
Sbjct: 292 -----VPGDHNVENALAAIAVAKIKGVSTAAIVAVLRSFGGVRHRTQYVLEADGRQYYND 346

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A     +E     ++  T+   +V+   G DR      ++  +   +  + +V     
Sbjct: 347 SKAT---DMEATEMALKGFTA--PVVLIAGGLDRGYTFEKLVPSLKAHVKAVVLVGQTAK 401

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ED  K       GI       N   A+ TA E+ +  D++++
Sbjct: 402 LLEDAAK-----KAGIQTIRLSENVETAVPTAYELSDAGDIILL 440


>gi|58698887|ref|ZP_00373754.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534596|gb|EAL58728.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 462

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 146/411 (35%), Gaps = 51/411 (12%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V SSA    +        +N  IL   +    L            + ++AV+G+SG
Sbjct: 74  AQIVVHSSAIESDNVELVTARNNNKTILHRSDILAELLR---------DKYVIAVSGSSG 124

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I   S + +  I     ++S+  ++RL       +    S          
Sbjct: 125 KTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSRLGKSDIFLIEADESD--------- 174

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                        +  I       T++  DH+D++ T     +A  +   +      P  
Sbjct: 175 -----------GTMLKIPANITVITSINDDHMDHYGTFDDIKHAFSQFINKADFAILPDS 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +   S  +M    +   R  ++      I    +   +++ +  +            
Sbjct: 224 VGINYDASNSMMFGFESGNIRASNIKQHANSIEFDVLIDNNHRIKNVVL---------SN 274

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G  +V NAL A  + I +GI  A + + L +   V  RF  +     G ++  DYAH 
Sbjct: 275 TIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIADIK-GVKLIEDYAHH 333

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            N +   L   R+IT G++I +       R +       +I   + D  I+T  +P  + 
Sbjct: 334 PNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRI-FMMFDYVILTPVHPPEDK 392

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           P      + I+  +I       +  N    I   I    +  D+++  G G
Sbjct: 393 PIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFIGAG 443


>gi|323140718|ref|ZP_08075637.1| bifunctional protein FolC [Phascolarctobacterium sp. YIT 12067]
 gi|322414736|gb|EFY05536.1| bifunctional protein FolC [Phascolarctobacterium sp. YIT 12067]
          Length = 434

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 85/308 (27%), Gaps = 9/308 (2%)

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
               T   I  A A  Y   Q V +  +E    GL     + I  +    TN+  DH D 
Sbjct: 115 CEQPTQFEILTAAAFLYFYLQKVDYAVIEVGMGGL-WDSTNVITPVVSVITNVALDHTDR 173

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                     +     +       A    +       +     A   +    + G  +  
Sbjct: 174 CGKTLERIAMQKAGIIKEKVPLVTAAEGNEALGPIVSLAMFKEAPVYLYGKAFHGTEVKS 233

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                              +         +      + A  +       + L L      
Sbjct: 234 SMEGQAFTLHAGDFYHSDYEIKLPGEHQIKNTSVAIVAAKLVSKQDDRINELALHVGVAN 293

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGK 398
            V PGR E      +   I +D AH  +  + +   +     G+ +  VFG  GD+D   
Sbjct: 294 TVWPGRLER---IHKNPDIILDGAHNPDGAKALRNALDKYYPGKQVQFVFGMMGDKD--- 347

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              + K  ++  D+      +  +   E      + G    + + N   A   AI     
Sbjct: 348 MSGVIKTLINQDDVVYTVRADEGARAAEAADLAKLVG-SNAVAETNLATAYDAAIRGAGT 406

Query: 459 QDVLVVAG 466
             V+ V G
Sbjct: 407 DGVVCVCG 414


>gi|283786393|ref|YP_003366258.1| bifunctional FolC protein [includes: folylpolyglutamate synthase;
           dihydrofolate synthase] [Citrobacter rodentium ICC168]
 gi|282949847|emb|CBG89470.1| bifunctional FolC protein [includes: folylpolyglutamate synthase;
           dihydrofolate synthase] [Citrobacter rodentium ICC168]
          Length = 422

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   + +D AH  ++ E +   ++ +   GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VILDVAHNPHAAEYLTGRLKMLPKQGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   +  G        +  +A R A  
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGQGG----VYDSVAQAWRAARA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKPEDTVLVCG 402


>gi|196232259|ref|ZP_03131113.1| UDP-N-acetylmuramate [Chthoniobacter flavus Ellin428]
 gi|196223627|gb|EDY18143.1| UDP-N-acetylmuramate [Chthoniobacter flavus Ellin428]
          Length = 461

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 23/187 (12%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   + GE+ V NA +A       GI  + + + +     V  R E  G   RG  +  D
Sbjct: 274 FTIQMVGEYNVRNAAMAISAAHFYGIPLSAIAKAVAAFEGVKRRQEVRG-EVRGMTVIDD 332

Query: 362 YAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK---IALDLADIAIVT- 416
           + H   ++   L+ +R    S R+  +F    +    +R +       AL  AD  I+  
Sbjct: 333 FGHHPTAIRETLRGLRHQYPSRRLWAIFEPRSN--TTRRAVFQHELPAALGEADGVILAQ 390

Query: 417 --------DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    DN    DP K+ A+I         + +    I     ++ ++DV+V+   G
Sbjct: 391 VARMDQLAADN--RLDPAKVVADIAATGRPAFYEPDVTAIIARLKPLVKERDVIVILSNG 448

Query: 469 -----HE 470
                HE
Sbjct: 449 GFGGIHE 455


>gi|296284500|ref|ZP_06862498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 433

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 64/398 (16%), Positives = 121/398 (30%), Gaps = 68/398 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSN---TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           A++V+    L        ++    P++   +      LFA       P  ++ +TGT+GK
Sbjct: 67  AVLVTPGVPLNTHPIKPHADKFGVPVIG--DIE----LFAQAREHLPPHKVVGITGTNGK 120

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+  +    I + +G+ +   G         +                            
Sbjct: 121 STTTALTHHILKTAGVPTTMGGNIGLPILGQEPLPEG-------------------GVYV 161

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS+ +D      +        N+  DH+D +++ +AY  AK+R              
Sbjct: 162 LELSSYQIDL--TFSLDCDVAVILNITPDHLDRYESFEAYAEAKLR-------------- 205

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                     +    +AG   +         +  +  A  +                  L
Sbjct: 206 ----------LSDLQSAGRPTVIGDEVLGLWNPGRNVAPEDLWVCDREYPLPGQSNWPTL 255

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     N   A  L   +GI+ A++ + L     +P R E VG  +    +    A  +
Sbjct: 256 QGPHNSENVDAAGCLASQLGIEDAVIDQALRTFPGLPHRMERVGERAGVLYVNDSKATNT 315

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L     I      +V G      Q K P +G+    +     VT      E  +
Sbjct: 316 AAAAPALAAFEKIH----WIVGG------QAKEPGLGETEQHIGH---VTAAYTIGEAGD 362

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +    P     G    A+ TA       + +++
Sbjct: 363 AFADALAPHCP-VSRCGTLDIAVHTAALAAKPGETVLL 399


>gi|254526648|ref|ZP_05138700.1| UDP-N-acetylmuramate--alanine ligase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538072|gb|EEE40525.1| UDP-N-acetylmuramate--alanine ligase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 468

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 97/339 (28%), Gaps = 25/339 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD-QHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           +T     L       SS     + +  S+  L+    L      +    N  +  I    
Sbjct: 131 STFLSTILELCTHDSSSITGGIIPIYNSNCHLENTKYLVAEVDESDGTINQYKSDIGIIN 190

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                         E++         +         + + N                   
Sbjct: 191 NIDFDHCDHFSDLNEVISSFRSFAKNSKKLLLNFDCETSRNNFFSNSKWSNTTTKNVAYA 250

Query: 282 VCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           +       + TI    +  +F      P+PG   + N   A      IG+D   +  +++
Sbjct: 251 IIPTQINSKYTIGKYYEHGNFVSNLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKRNIK 310

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI---------IVVF 388
            L +   RFEF G  +    +Y DYAH  N ++  +K  +     +          I +F
Sbjct: 311 YLKLPKKRFEFRGQINE-RLLYDDYAHHPNEIKETIKLGKLFIKQKHNNECQKSRLIAIF 369

Query: 389 GCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIE 441
                 R +       +     AD+  VT      E+ E       I   I         
Sbjct: 370 QPHRYSRVKQFTKEFAEELSK-ADVIYVTSIYGAGEENEDRITSKIITDLIYKKNKNVCY 428

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG--HETVHIVTNG 478
             N  +      E+  K D+++  G G  H+   I+   
Sbjct: 429 INNYHKITENFYELTQKGDLILNMGAGDCHDFWSILKEK 467


>gi|323339597|ref|ZP_08079871.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC
           25644]
 gi|323092992|gb|EFZ35590.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ruminis ATCC
           25644]
          Length = 467

 Score = 50.3 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 84/278 (30%), Gaps = 28/278 (10%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
           G        TN+  DH DY    +   +A   L +                     ++  
Sbjct: 187 GYHPDYTIMTNIDFDHPDYFTGIEDVCDAFQELADHTKKALFVWGEDKH-------LQNI 239

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                       +   +  + +          + +  +    F  PL G+  V N+L   
Sbjct: 240 KVDIPVYRYGTEENDDVRAENIKRTTKGSSFDVYLHDEFLGTFDIPLFGKHNVLNSLAVI 299

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-T 378
            +     ID+  V   L     V  RF           I  DYAH  + +   +   R  
Sbjct: 300 AVSHLEKIDAEEVKRELLTFKGVKRRFSEKKVA--DMVIIDDYAHHPSEIAATIDAARQQ 357

Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNP--RSEDPEKIRAEIIHG 435
               +II VF      R         K +LDLAD   +T+     R ++ E    ++   
Sbjct: 358 YPKKKIIAVFQPHTFSRTVALMDDFAK-SLDLADKVYLTEIFSSIREQNGEVSAKDLGEK 416

Query: 436 IPGFIEKGNRIEAIRTAIEMLNK-----QDVLVVAGKG 468
           I    E  +        ++ ++       DV++  G G
Sbjct: 417 ISKGGEVLS--------LDNMSPLLDFHDDVVIFMGAG 446


>gi|322642363|gb|EFY38968.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
          Length = 453

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|303251841|ref|ZP_07338012.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249142|ref|ZP_07531149.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649271|gb|EFL79456.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854430|gb|EFM86626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 475

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 129/418 (30%), Gaps = 48/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V SSA    +    A   +  P++      + L+      +G      +AV GT
Sbjct: 76  AGASVVVASSAIDDSNPEVRAAKEARIPVIQRA---QMLAEIMRFRHG------IAVAGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I       +                +           A +  S     
Sbjct: 127 HGKTTTTAMISMIYTE----AKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFL 182

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+    S                   TN+  DH+D +        A    F   LP    
Sbjct: 183 HLQPMVS-----------------VVTNIEPDHMDTYGGDFEQMRATYVKFLRNLPFYGL 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD    E+  +                   ++       +   T+     +   +
Sbjct: 226 AVMCADDETVIEIAPQVGRQVLTYGFSEKADY--RIEDYQQTGFQGHYTVVCPNGERIDV 283

Query: 304 F-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
              +PG+    NA  A  +    GI +  +L  L        RF+ +G+  R      + 
Sbjct: 284 LLNVPGKHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLV 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD 417
            DY H    +++ +K  R+    + +V+        + +       ++     D  I+ +
Sbjct: 344 DDYGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQ-VDALIMLE 402

Query: 418 DNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E P      + +   I + G    I   +  +      +++   D+++  G G
Sbjct: 403 VYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|229496580|ref|ZP_04390294.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316477|gb|EEN82396.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas endodontalis
           ATCC 35406]
          Length = 464

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 88/277 (31%), Gaps = 15/277 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       T++  DH+D + T + Y     +   ++ P  +        +  +   +  
Sbjct: 179 HLYPHIAIVTSMDPDHLDIYGTPEGYREGFAQFIRQVKPGGTLIYKKGITSTPETQEEVK 238

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +       IH  +     +       +E K+ +   P+    +   A +   
Sbjct: 239 CYTYAMGETADSYSDNIHFDEGRLFFDWHFPERGIEFKNLELGVPITINVENATAAL--T 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G+    +   L     +  RFE +  ++    +  DYAH    L   + ++R + 
Sbjct: 297 AACLLGVSETELRSALASFRGIHRRFERL-LDTPNRVLIDDYAHHPEELRASIASVRALY 355

Query: 381 SGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI 432
               I          R Q   P   ++  +L D  I+    P  E+P        I  ++
Sbjct: 356 PHDKITGIFQPHLYSRTQDFYPEFAEVLSEL-DEVILLPIYPAREEPIPGVSSSLILDKV 414

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  I    R E I    E  N   V++  G G+
Sbjct: 415 STAEKSLIP---REELIERLRERENLNRVILTLGAGN 448


>gi|228923443|ref|ZP_04086729.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836228|gb|EEM81583.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 436

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFADINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R IV         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|320353669|ref|YP_004195008.1| FolC bifunctional protein [Desulfobulbus propionicus DSM 2032]
 gi|320122171|gb|ADW17717.1| FolC bifunctional protein [Desulfobulbus propionicus DSM 2032]
          Length = 430

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEMIL 373
           L A  +   I   S   L    +    PGR E +    +    R+ +D AH    +  + 
Sbjct: 260 LAAMEMVAPIFPISEQALREGLQQVRWPGRMELLHIVHQEKKLRLLLDGAHNEAGVAALT 319

Query: 374 KNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDL---ADIAIVT-DDNPRSEDPEKI 428
             +R      ++++V+G   D++      MG +  +L   A+  ++T  ++ RS  P  +
Sbjct: 320 VALRHGFPRRQLVLVWGNMADKN------MGAVLFELMAMAERILLTRAESQRSAAPSLL 373

Query: 429 RAEIIHGI-PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             ++   +           +A+  A  +    D+L VAG
Sbjct: 374 LTQLPPDLQAKSQCVEPVEQALAVAGVLAEADDLLCVAG 412


>gi|71900694|ref|ZP_00682817.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71729515|gb|EAO31623.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 439

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 129/390 (33%), Gaps = 44/390 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+      +G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRHG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S +  +    G   +F IG                     L  A +         
Sbjct: 126 KTTTTSLIAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGAGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VEA        RL+ +       TN+  DH++ +    +        F + LP    A
Sbjct: 167 LVVEADESDGSFLRLNPLV---AVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFL 303
           ++  DD    E+  +A      +         +  + V     +   T+ +         
Sbjct: 224 LLCLDDPEVAELAGKARRH--VMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKVIPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV--- 360
             LPG   V NAL A+ +   +G+   ++   L+    +  RF  +G  + G    V   
Sbjct: 282 LALPGRHNVLNALAASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLI 341

Query: 361 -DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSSVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
             P  E P  I       +   I    R E
Sbjct: 401 VYPAGEVP--IPGADAKALARAIRARGRSE 428


>gi|227877322|ref|ZP_03995395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           crispatus JV-V01]
 gi|256848742|ref|ZP_05554176.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-1A-US]
 gi|262045850|ref|ZP_06018814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-3A-US]
 gi|293381718|ref|ZP_06627699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus 214-1]
 gi|312977598|ref|ZP_07789345.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           crispatus CTV-05]
 gi|227863178|gb|EEJ70624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           crispatus JV-V01]
 gi|256714281|gb|EEU29268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-1A-US]
 gi|260573809|gb|EEX30365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-3A-US]
 gi|290921765|gb|EFD98786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus 214-1]
 gi|310895337|gb|EFQ44404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           crispatus CTV-05]
          Length = 459

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 114/393 (29%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y           N PI+        LS              + VTG++GK++     Q+
Sbjct: 84  PYENPMVQKAEELNIPIITEPEV--ALS--------CSDAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKSGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +      A+  
Sbjct: 176 FQL-LGVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQNSNDYFI---ANYD 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K    +  ++ +                   Q   I            LPG   
Sbjct: 232 QKDILAKEKEVSPAKMQTFSETDHNADYFIGDEYLESQNEKIMK-----ISDIKLPGIHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 287 LQNSLVAIAISKIMGADNDDIAAVLSTFTGAKHRLQYVTTLDGCKVYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +        ++       E    +   
Sbjct: 347 AIPSFKQPE-----VLIAGGLDRGFTFDDLVP-LFKKHVKSIVL-----YGETRYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E++   DVL+
Sbjct: 396 ARKAGIKDIVIVNTLQEAVPRAWELVEPGDVLL 428


>gi|169827009|ref|YP_001697167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
 gi|168991497|gb|ACA39037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
          Length = 276

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 79/258 (30%), Gaps = 25/258 (9%)

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TNL   H+DYH T   Y  AK  +       +      AD         +++       S
Sbjct: 14  TNLYDAHLDYHGTFDNYAEAKFGVTRNQDESDYFIY-NADQPIVVGYAAKSNAQKIPFSS 72

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G     I                            LPG+  + N L A   CI +G D 
Sbjct: 73  NGRTVHGISADDTTIYWQGDPYMDRANI-------ALPGKHNLENILAAVAACILVGCDK 125

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             + E L     V  R +FV   +         A    + +  L   +       +++  
Sbjct: 126 GKMEEVLATFGGVRHRTQFVREWNGRKIYNDSKATNCLATKSALDAFQA-----PVILLA 180

Query: 390 CGGDRDQGK---RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
            G DR       RP M  +      +    +   R  +  K       G+   +   N  
Sbjct: 181 GGLDRGHSFEELRPSMNHVKG----VVAFGETGLRFVEFAKSC-----GVQQTVIAQNVE 231

Query: 447 EAIRTAIEMLNKQDVLVV 464
           +A+  A  M  + D++++
Sbjct: 232 DAVHYAAPMSAEGDIILL 249


>gi|21674299|ref|NP_662364.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium tepidum TLS]
 gi|21647471|gb|AAM72706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium tepidum TLS]
          Length = 474

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 99/365 (27%), Gaps = 29/365 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              + V GT GK++  S V  + +  G        G         + + L+ P       
Sbjct: 105 HTSIVVAGTHGKTTTTSLVAWLLEAGGLLPGFLIGGIPENFGDGCRPSGLSEP------- 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                          +  S  L        +       N+  DH D   +      +   
Sbjct: 158 GFFVTEGDEYDSAFFDKRSKFLHY------RPDIAIINNVEFDHADIFDSLDDIKKS--F 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L   +  +I   D  +   +            +    ++                
Sbjct: 210 RLLVNLVPSNGLLIVNADDPNSMEVSAKAFCRVETFGLNGNAEWTAADIATDTDGTSFTV 269

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +           PL G + V NAL A    I  G+    V   L        R E VG  
Sbjct: 270 VRDSEAIGRVKVPLFGNYNVMNALAATAAAIRAGVSFESVTRGLCSFKRPKRRMELVGEY 329

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           + G  +  D+AH   ++ + L  I     GR I+           +     +++    D 
Sbjct: 330 AGGITLIEDFAHHPTAIRLTLGAIAEHYPGRRIIACFEPRSNTTSRNIFQHELSECFGDA 389

Query: 413 AIVT-DDNPRSE--------DPEKIRAEIIHGIPGFIEKGNR---IEAIRTAIEMLNKQD 460
           AIV      R E        D   +  E+          G+     + +R         D
Sbjct: 390 AIVVLGKVNRPERYAPEERLDAALLCRELKANGKRVFAAGSENYPEDIVRFIEAEQQPGD 449

Query: 461 VLVVA 465
           V+V+ 
Sbjct: 450 VVVLL 454


>gi|160916122|ref|ZP_02078329.1| hypothetical protein EUBDOL_02149 [Eubacterium dolichum DSM 3991]
 gi|158431846|gb|EDP10135.1| hypothetical protein EUBDOL_02149 [Eubacterium dolichum DSM 3991]
          Length = 405

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 111/367 (30%), Gaps = 32/367 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP----TSTISSFAQDNRLTTPS----P 167
             + V GT+GK S  ++V+ I Q +G            T        D  ++        
Sbjct: 40  CAIHVGGTNGKGSTTNYVRAILQAAGYRVGSFTSPYLITHRDRIRINDIEISEADFLKIA 99

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI----AGSFTNLGRDHIDYHQTQ 223
                +               AS +   Q     +  +        TN+ +  +      
Sbjct: 100 NDYYASWIEWDLSMFEIDMCIASVYFKQQKVDYCVFEVGLGGRLDATNVLQPLLSVITNI 159

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
               +  +      + KE   II           K    +    ++     +   LK + 
Sbjct: 160 GMDHSELLGDSYTAIAKEKAGIIKEGIPLVTAEKKAECCSVFAEIAKEKHSEVHVLKPIE 219

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA---GLCIAIGIDSALVLEHLEKLH 340
               +    +   G           ++Q  NA +A     L       S  +L       
Sbjct: 220 NRRCENLHILFDYGDHKQIKLATAADYQCENAALAIEAVSLLHGRLHISEEILRQALAAT 279

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
              GRFE V        + +D AH    +E +  ++  I     ++VF    D++     
Sbjct: 280 QWKGRFEIVQKEPL---VILDGAHNVEGIEALCDSLDNIH--NPVIVFSVLKDKNFT--- 331

Query: 401 IMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +M +  + + D  IVT   + R+ D +++  +            +   AI+ A  M    
Sbjct: 332 VMLEKLMGITDTMIVTKLHHERAYDMDRLAQQY-----DVCYIEDSKTAIQQACAMKRA- 385

Query: 460 DVLVVAG 466
             +V+ G
Sbjct: 386 --VVITG 390


>gi|26246021|ref|NP_752060.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli CFT073]
 gi|218687965|ref|YP_002396177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ED1a]
 gi|227885007|ref|ZP_04002812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300981125|ref|ZP_07175371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|301048480|ref|ZP_07195505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|30316043|sp|Q8FL65|MURD_ECOL6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|26106418|gb|AAN78604.1|AE016755_104 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           CFT073]
 gi|218425529|emb|CAR06312.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           ED1a]
 gi|227837836|gb|EEJ48302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300299666|gb|EFJ56051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|300409027|gb|EFJ92565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|307551932|gb|ADN44707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ABU 83972]
 gi|315294717|gb|EFU54060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 153-1]
 gi|324008323|gb|EGB77542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 57-2]
          Length = 438

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    +    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLATRVQPGDMVLL 410


>gi|312140348|ref|YP_004007684.1| dihydrofolate synthetase/folylpolyglutamate synthetase folc
           [Rhodococcus equi 103S]
 gi|311889687|emb|CBH49004.1| dihydrofolate synthetase/folylpolyglutamate synthetase FolC
           [Rhodococcus equi 103S]
          Length = 476

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V        +++D AH  +  + +   +       +++ V    GD+D     
Sbjct: 328 NPGRLERVRNAPT---VFLDAAHNPHGAQALAAALSAEFDFRKLVGVVSVMGDKDVDG-- 382

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAI---- 453
            +      + D  +VT + +PR+ D E +    +   G    +      +A+ TAI    
Sbjct: 383 -ILSALEPVFDEIVVTHNGSPRAMDVEDLANRAVARFGDERVVVASTLPDALETAIGLAE 441

Query: 454 EMLNKQDVL 462
           E+    + +
Sbjct: 442 EVAEPGEAV 450


>gi|325677075|ref|ZP_08156744.1| tetrahydrofolate synthase [Rhodococcus equi ATCC 33707]
 gi|325552060|gb|EGD21753.1| tetrahydrofolate synthase [Rhodococcus equi ATCC 33707]
          Length = 476

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 14/129 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V        +++D AH  +  + +   +       +++ V    GD+D     
Sbjct: 328 NPGRLERVRNAPT---VFLDAAHNPHGAQALAAALSAEFDFRKLVGVVSVMGDKDVDG-- 382

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAI---- 453
            +      + D  +VT + +PR+ D E +    +   G    +      +A+ TAI    
Sbjct: 383 -ILSALEPVFDEIVVTHNGSPRAMDVEDLANRAVARFGDERVVVASTLPDALETAIGLAE 441

Query: 454 EMLNKQDVL 462
           E+    + +
Sbjct: 442 EVAEPGEAV 450


>gi|198282931|ref|YP_002219252.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668082|ref|YP_002425134.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247452|gb|ACH83045.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520295|gb|ACK80881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 455

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 115/358 (32%), Gaps = 35/358 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++  S +  I Q +GL    +      +         +P  +    
Sbjct: 101 QSRWVLAVAGTHGKTTTTSILTWILQEAGLDPGFLIGGEARNFGVSARLTDSPFFV---- 156

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               + +        +  S  +  H        +    NL  DH D     +A       
Sbjct: 157 ----IEADEYDTAFFDKRSKFVHYH------PRSLILNNLEYDHADIFPDMEAI-----I 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +KR    GC      + G      ++ A+   +   
Sbjct: 202 TQFHHLLRTVPGAGAIIVKDGVPALKRVLERGCWTPLQRFAGTGEWQVRLDAVDGSRFTV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    +     + + G F   NAL A       G+  A+    L     V  R E  G  
Sbjct: 262 LEQGVERGQVGWEMAGSFNAENALAALLAARHAGVPLAVGCAALRSFQGVRRRLELRGRA 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGD--RDQGKRPIMGKIALD 408
             G  +Y D+AH   ++   +  +R    G  R+I V     +  +    R  +G  +L 
Sbjct: 322 G-GVAVYDDFAHHPTAIAATITALRGRMEGTERLIAVLEPRSNTMKMGVHRQTLGP-SLQ 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAI-EMLNKQDVLVV 464
            AD A V         P  +  ++   +    +   +  +A+  A+   L   D +++
Sbjct: 380 GADRAFVYA-------PADLGWDVAAALDSAAQVYVDM-DALLRALDAELRPGDDVLI 429


>gi|322513884|ref|ZP_08066963.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
 gi|322120283|gb|EFX92230.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
          Length = 475

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 139/447 (31%), Gaps = 60/447 (13%)

Query: 38  RHIQAGW-IFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILV 94
           R ++AG  +F+        GH      I  GA  +V SSA      +  A   +  P++ 
Sbjct: 58  RLVEAGAKVFI--------GHQ-AENII--GASVVVASSAIDDTNPEVKAAKEARIPVIQ 106

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
                + L+      +G      +A+ GT GK++  + +  I       +          
Sbjct: 107 RA---QMLAEIMRFRHG------IAIAGTHGKTTTTAMISMIYTE----AQLDPTFVNGG 153

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
                 +           A +  S     H+    S                   TN+  
Sbjct: 154 LVKSAGKNAHLGASRYLIAEADESDASFLHLQPMVS-----------------VVTNIEP 196

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH+D +        A    F    P    A++ ADD    E+  +               
Sbjct: 197 DHMDTYGGDFEQMKATYVKFLSNSPFYGLAVMCADDETVMEIAPQVGRQVVTYGFSDKAD 256

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVL 333
               ++       +   T+     +   +   +PG+    NA  A  +    GI +  +L
Sbjct: 257 Y--RIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIGNEAIL 314

Query: 334 EHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             L        RF+ +G+  R      +  DY H    +++ +K  R+    + +V+   
Sbjct: 315 AALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSGWEDKRVVMIFQ 374

Query: 391 GGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIH-GIPGFIE 441
                + +       ++     D  I+ +     E P      + +   I + G    I 
Sbjct: 375 PHRYSRTRDLFDDFVQVLSQ-VDALIMLEVYAAGEAPIVGADSKALCRSIRNLGKVDPIL 433

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +  +      +++   D+++  G G
Sbjct: 434 VSDTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|225630075|ref|YP_002726866.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia sp. wRi]
 gi|254766032|sp|C0R5N3|MURC_WOLWR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225592056|gb|ACN95075.1| UDP-N-acetylmuramate-alanine ligase [Wolbachia sp. wRi]
          Length = 474

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 146/411 (35%), Gaps = 51/411 (12%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V SSA    +        +N  IL   +    L            + ++AV+G+SG
Sbjct: 86  AQIVVHSSAIESDNVELVTARNNNKTILHRSDILAELLR---------DKYVIAVSGSSG 136

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I   S + +  I     ++S+  ++RL       +    S          
Sbjct: 137 KTTTTAMIASIFDHSNIDATVI-VGGILNSYQSNSRLGKSDIFLIEADESD--------- 186

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                        +  I       T++  DH+D++ T     +A  +   +      P  
Sbjct: 187 -----------GTMLKIPANITVITSINDDHMDHYGTFDDIKHAFSQFINKADFAILPDS 235

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +   S  +M    +   R  ++      I    +   +++ +  +            
Sbjct: 236 VGINYDASNSMMFGFESGNIRASNIKQHANSIEFDVLIDNNHRIKNVVL---------SN 286

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G  +V NAL A  + I +GI  A + + L +   V  RF  +     G ++  DYAH 
Sbjct: 287 TIGMHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIADIK-GVKLIEDYAHH 345

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            N +   L   R+IT G++I +       R +       +I   + D  I+T  +P  + 
Sbjct: 346 PNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRI-FMMFDYVILTPVHPPEDK 404

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           P      + I+  +I       +  N    I   I    +  D+++  G G
Sbjct: 405 PIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFIGAG 455


>gi|168262553|ref|ZP_02684526.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205348947|gb|EDZ35578.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 459

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 95/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVW 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGAKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|332312486|gb|EGJ25581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. Scott A]
          Length = 461

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 97/283 (34%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDF 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 227 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGARD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 279 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++       A I          
Sbjct: 339 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKALIVF-------G 386

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       N   A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGID-VHYVDNVEAAVPVAYRESAPGDIILL 428


>gi|297623830|ref|YP_003705264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165010|gb|ADI14721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
          Length = 459

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 31  NEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNT 90
             V+  S  ++ G  F A+ G    G  +   A+  GA  IV    +             
Sbjct: 27  RGVAFHSARVRPGDAFFALPGASSHGLRYADAALQAGAAFIVSDRPHPRG---------- 76

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
             L V +  + L              ++ VTG++GK+S 
Sbjct: 77  --LTVPDPARLLLQLGRVARAALQGPVIGVTGSAGKTST 113


>gi|238797574|ref|ZP_04641071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia mollaretii ATCC 43969]
 gi|238718571|gb|EEQ10390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia mollaretii ATCC 43969]
          Length = 461

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 99/355 (27%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAIAGTHGKTTTAGMVAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLVMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC             L +  +        
Sbjct: 202 KQFHHLVRLVPGKGKIIVPDNDNHLKQVMAMGCWSEQELVGETGSWLARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 FLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +         P ++       I       +    +   ++     D ++V
Sbjct: 381 ADEVFLFQPQH---IPWQVVEVAEACIQPAHWSADIDTLVDMIVKTAQPGDHILV 432


>gi|218561393|ref|YP_002394306.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|218368162|emb|CAR05971.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli S88]
          Length = 457

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 103/359 (28%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I ++ G     +       +F    RL       +   
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEQCGYKPGFV-IGGVPGNFEVSARLGESDFFVIEAD 160

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
               +                 + +            NL  DH D     +A        
Sbjct: 161 EYDCAFFD-------------KRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +      +  P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQP---AHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPSDHILV 432


>gi|170781766|ref|YP_001710098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156334|emb|CAQ01482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 514

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 101/312 (32%), Gaps = 28/312 (8%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I L          G   + VE SSH L   R   ++  + +F NL  DH+++H ++QAY 
Sbjct: 172 IGLPVLDVVRHPDGFDVLVVELSSHQLHYMR--EVRPYSSAFLNLADDHLEWHGSRQAYA 229

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------FIHLKK 281
            AK R++ +                +         A      +   G          L  
Sbjct: 230 AAKGRVYADTRVACVYNRADRATEDALRHANVQDGARAIGFGLDAPGPSDLGIVDDILCD 289

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
              +  +    + +   D      L     V N L AA L  + G+  A+V + L++  +
Sbjct: 290 RAFLEERFTSALELTTLDELRAVGLAAPHIVQNVLAAAALARSYGVSPAVVRQALQRFEL 349

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
              R E +G       +    A   ++    L    +      +V    G  +      +
Sbjct: 350 DSHRIERIGERDGVAFVDDSKATNPHAASASLAAFPS------VVWLVGGLLKGVELDDL 403

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGN----RIEAIRTAI 453
           +   A  L    ++        +  ++ A      P        + +       A+R A 
Sbjct: 404 IRAHAARLRAAIVI------GVERAELLAAFARHAPDVTVLEVAESDTDEVMRSAVRLAA 457

Query: 454 EMLNKQDVLVVA 465
            +  + D +++A
Sbjct: 458 GVAREGDTVLLA 469


>gi|300813921|ref|ZP_07094225.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300511984|gb|EFK39180.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 261

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 76/232 (32%), Gaps = 19/232 (8%)

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG-KDFD 301
            AI   D+ Y K +  +      R      +   ++ K +         T+ ++G  +  
Sbjct: 26  IAIFNYDNDYVKPLADKTKKKTYRYGIKDIEKLDVYAKDIRVNEKGSTFTLGIKGLGEIS 85

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               L G   + N L  A     +G +   +   +EK+  V  R   V + +    I   
Sbjct: 86  CSSVLLGIHNISNLLAGASAAYVLGFNLEQIKNGIEKVKAVEHRLNIVPSPAGYVVIDDA 145

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           +          L  I     G+ I++       G  ++ +   +G     + D  I+   
Sbjct: 146 FNSNPVGFRAALSVIDEFKEGKKIIITPGMVELGAIEEEENYKIGIEIAKVCDYVILVG- 204

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR-------TAIEMLNKQDVLV 463
                  +KI A I   +       +RI  ++         +E+    DV++
Sbjct: 205 -------QKISAPIKRALIDNNFNEDRIFTVKSLNDGTSKLVEIAKAGDVVL 249


>gi|219684279|ref|ZP_03539223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBr]
 gi|219672268|gb|EED29321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBr]
          Length = 451

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 126/431 (29%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           +  GA+ ++       +     D                         +VV N       
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLKDFDDQIRYVLGKHDINDFKKADIVVKNPSVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                A R           +   I+AVTGT GKS++ S + Q+ ++    +   G     
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQVLKKKYPRAKLGGNIGIS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGRSPLILEL-------------------SSWQLQS--LENFNPILSIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F       +     A   Y  +   +A        +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIAIIQDKAYYKYFSKFESKAKVILFSEFNPLV 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + +       ++            +    F       +   L+A  +   + +D    
Sbjct: 249 LDQDVFYYNKGEVYFND---------NLIGSFSESQVVFMIPKLIAFFVSYYLNMDLNHT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L K   +  R EFV             +   +S  + +K+++T  +   ++V G   
Sbjct: 300 FKILNKFRGIEHRLEFVKLVQNVMFYNDTASTIPDSTVLSVKSLKTNDNSINLIVGGTDK 359

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           + D        KI        + T    +     KI   +      +    +  +A+  A
Sbjct: 360 ELDFS---SFCKIIN-----LVKTWILIKGSATVKIIKILEKSSIQYFVFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 SKISSPGDIVL 422


>gi|159903953|ref|YP_001551297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889129|gb|ABX09343.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 457

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 121/388 (31%), Gaps = 42/388 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +V S A +    +     N  I       +  S  +           + VTGT+GK++V 
Sbjct: 68  VVTSPAIAWDHCTLNALRNKGI-------EIESEISLAWKALKHIPWIGVTGTNGKTTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +   + +++   G                     +A      S      + +E S
Sbjct: 121 HMLHHVLNSNQINTAMGGNVGIP-------------ASQIALDSIRSSRTEPNWLVMELS 167

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ L+      I    G +T L  DH++ H + + Y        ++ L + S   IY  D
Sbjct: 168 SYQLETS--PNISPKIGIWTTLTPDHLERHGSLENYS-----DIKKRLLENSSIRIYNLD 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPG 308
            +  +  +     G  V + G                  +  +  +G++        +PG
Sbjct: 221 DHFLKNARSKLMEGIWVSTNGAAINNNQAD----FWITSKGKLYEKGEEILDTTLLNIPG 276

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              + N L+       IG+    + + +     VP R E +             A    +
Sbjct: 277 RHNLQNLLLVTAAAREIGLSPRDIEQAIASFKGVPHRLEKIANIKGIEIFNDSKATNYEA 336

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            ++ L+ + +        +   GG   +G      +     A   ++   +  +   + I
Sbjct: 337 AKIGLEAVPS------PTIVIAGGQSKKGNPNDWLQALNKKACAVVLFGASANTL-FDLI 389

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           R     G        +  +AI T   + 
Sbjct: 390 RDSKFSG--PVNCFPSLNDAIETVFNLA 415


>gi|320449227|ref|YP_004201323.1| folyl-polyglutamate synthetase [Thermus scotoductus SA-01]
 gi|320149396|gb|ADW20774.1| folyl-polyglutamate synthetase [Thermus scotoductus SA-01]
          Length = 413

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 11/125 (8%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E +     G ++ +D AH       + + +R        +V G   ++D      
Sbjct: 278 NPGRLERLPWPG-GKKLLLDGAHNPEGAWALRQALRFHGLLPAALVLGFSREKD---HRA 333

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           M +    L  + +    +PRS+DP      ++   PG + +   ++A+  A  +   ++ 
Sbjct: 334 MAEALKGLGPVVLTRYASPRSQDP----RALLPLFPGALVEEEPLKAVERAFTL---ENR 386

Query: 462 LVVAG 466
           +VVAG
Sbjct: 387 VVVAG 391


>gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus
           influenzae F3031]
 gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3031]
          Length = 437

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/394 (14%), Positives = 119/394 (30%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRTATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R     +   +   +  ++
Sbjct: 161 SFQLET--TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLR-----IYHNAKVGVLNNE 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                             +      ++  +        +   I            L G  
Sbjct: 214 DRLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMVKDEVILP-----CEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+     +    I    A    S  
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLAHHANGIRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R         
Sbjct: 329 AALAGL--YIEGKLHLLLGGDG-----KGADFSELAELINQPHIICYCFGRDGV------ 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 376 QLAKFSSQSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|229019918|ref|ZP_04176714.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273]
 gi|229026149|ref|ZP_04182520.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272]
 gi|228735158|gb|EEL85782.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1272]
 gi|228741383|gb|EEL91587.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1273]
          Length = 436

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 99/378 (26%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       FNA     E  L  +   I   DD
Sbjct: 159 ---------LSYYPDYAIMTNIDFDHPDYFTDVNDVFNAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G+ 
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGDH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|210616990|ref|ZP_03291325.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
 gi|210149513|gb|EEA80522.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
          Length = 458

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 122/406 (30%), Gaps = 42/406 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A +       ++F+   R N P+L   +  + L    +       +  +AV+GT GK++ 
Sbjct: 77  AAIHE---DNEEFAEAKRQNLPML---SRAELLGQLMTNY-----KTPIAVSGTHGKTTT 125

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            S +  +   +G     I     + +   + R+ +     +    +   +    H   + 
Sbjct: 126 TSMLSHVL-LAGEKDPTISVGGILKAIGGNIRVGSSD---VFVTEACEYTNSFLHFFPKI 181

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                                N+  DH+D+ +      N+    F  LLP +   +I  +
Sbjct: 182 G-----------------IILNVEEDHMDFFKDIDDIRNS-FHQFAALLPADGALVINQN 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 +                        +   I N     +            + G 
Sbjct: 224 IEGINSITDGLDCKIITYSERQPADYSASEIRFDEIGNASFDLLRHGEYVDRITLAVAGN 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    +C  + I   ++ + +        RF++ G    G  I  DYAH    +
Sbjct: 284 HNVSNALAVIAVCEQLEIPLDIIKKGILSFTGTDRRFQYKG-ERDGVTIIDDYAHHPTEI 342

Query: 370 EMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE----- 423
              L + +      I  +F      R +       + AL LAD  ++ D     E     
Sbjct: 343 RATLTSAQNYPHKDIWCIFQPHTYTRTKAFFDEFAE-ALSLADHVVLADIYAARETDTLG 401

Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +  +I           +  E      E     D+L+  G G
Sbjct: 402 MSSAALTEKIKELGTDAYYFPSFEEIENFVSEKCIHGDLLITMGAG 447


>gi|284009294|emb|CBA76432.1| FolC bifunctional protein [includes [Arsenophonus nasoniae]
          Length = 455

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 98/376 (26%), Gaps = 31/376 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ V GT+GK +    ++ I   +GL          +    +        P    
Sbjct: 69  QPAPKVVTVAGTNGKGTTCHTLETILIEAGLKVGVYSSPHLLDYTERVRIQGKTLPEEEF 128

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +           ++       +   L  ++L   +  ++    +       A      
Sbjct: 129 CRVFAAIESKRGTTTLTY----FEYGTLAALQLFKQAKLDVVILEVGLGGRLDATNIVDA 184

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL------------ 279
            +               +D       K       R   VG       +            
Sbjct: 185 NIAAITSIALDHIDWLGNDREQIGYQKAGIFRSGRYAVVGEPDMPKSINEVAQALGAKLF 244

Query: 280 -KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              V      Q      +  + DF         + NA  A  +   +  +   +   +  
Sbjct: 245 RCGVDWQFEPQNDHWHWQSHEHDFKQLPLPNVPLANAATALAIIDCLIKEGDAISRAISL 304

Query: 339 LHVVPGRFE-----FVGTNSRGGRIYVDYAHTSNSLEM---ILKNIRTITSGRIIVVFGC 390
             +  G  +           +   + +D AH  ++       L  +    + ++  V G 
Sbjct: 305 QAIQQGLIKAKLPGRFQIICQQPCVILDVAHNPHAAAYLADRLSCLPRQKNTKVYAVVGM 364

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
             D+D               D   +      SE      A++   +    +     +A  
Sbjct: 365 LADKDI---KSTLSYLAPQVDKWYLAS---LSEIRGADAAQLAQYVDSPYQFDTVKDAWL 418

Query: 451 TAIEMLNKQDVLVVAG 466
            A+   N+QD++VV G
Sbjct: 419 QAMNEANEQDIVVVCG 434


>gi|238924607|ref|YP_002938123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
 gi|238876282|gb|ACR75989.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
          Length = 463

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 94/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  K    +  N+  DH++ H T + Y  AK  + +     +   + Y
Sbjct: 174 EISSFQLET--IDTFKPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYCVLNY 231

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D   ++   +         S     +  +L     I+    V    +         L 
Sbjct: 232 -EDEVLRDFAAKCPAKVIFFSSKSELSEGFYLDGDIIIYAHDGVR---DEVIDVNELNLL 287

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N + A  + I+ G+    ++E L+    V  R E+V                 +
Sbjct: 288 GKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVEHRIEYVTEKRGVRFYNDSKGTNPD 347

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R  ++ G G D+       +      + ++ ++       +  +K
Sbjct: 348 AAIQGIRA-----MNRPTLLIGGGYDKQSEYDEWIEAFDGKVKELVLI------GQTADK 396

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    ++K    +A+    E     D +++
Sbjct: 397 IEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLL 434


>gi|311747242|ref|ZP_07721027.1| tetrahydrofolate synthase [Algoriphagus sp. PR1]
 gi|126578953|gb|EAZ83117.1| tetrahydrofolate synthase [Algoriphagus sp. PR1]
          Length = 428

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 9/122 (7%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                        D  H       IL  ++      + +V G   D+D        ++  
Sbjct: 302 RWQVLETQPMTICDTGHNIAGFTEILDQLKEYEYDALWMVLGMVQDKDVS------EVLS 355

Query: 408 DL---ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            L   A         PR+    ++  + +             EA+  A +   K D++ +
Sbjct: 356 KLPKEAHFVFCEAKIPRALPASELAKKALDYELKGQIVPEVNEALTFARKNAGKNDLIFI 415

Query: 465 AG 466
            G
Sbjct: 416 GG 417


>gi|225574670|ref|ZP_03783280.1| hypothetical protein RUMHYD_02747 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038097|gb|EEG48343.1| hypothetical protein RUMHYD_02747 [Blautia hydrogenotrophica DSM
           10507]
          Length = 448

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/399 (11%), Positives = 105/399 (26%), Gaps = 38/399 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++TR+ L    +    +    ++ V GT+GK S  +F+  + + +G S         I  
Sbjct: 39  EHTRECLRRLGN---PQEAFRVIHVAGTNGKGSTCAFLTSMLREAGYSCGLFTSPHLIEI 95

Query: 156 FAQDNRLTTP---------------SPIYLAKALSYLSSQGVTHVSVEASSHG------- 193
             +      P                   L    S+  +       +             
Sbjct: 96  NERFQINEVPVDNEIFLAAFHRVKEMADELVAQGSHHPTYFEMLFLMGMLIFKEAGVDYV 155

Query: 194 -LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            L+      +         +             Y    +              +      
Sbjct: 156 TLETGLGGRLDATTSIENPMACVITSISMDHMEYLGNSLEEIASEKAGIIVPGVPVIFDG 215

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           +            + L   +        ++   + +  +  S++   ++           
Sbjct: 216 NHGAAAEVVRKKAQELGSPFYEVCEADCEI-LRNTRDGIDFSMKNGYYEKNIFSIPFVAR 274

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           Y  + AA     + +          +L + +          +    + VD AH  + +  
Sbjct: 275 YQVMNAALALKTMEVMREQFSFTTRQLQMGMAQTRWQGRMETVLPGVIVDGAHNEDGVFR 334

Query: 372 ILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSEDPEKI 428
            ++  R      +I ++F    D+D      M +        D  + T  +     P + 
Sbjct: 335 FVETARYFQEESKITLLFSAVSDKDY---KDMIRTICQGIHLDQVVTTQIDGYRVVPAQE 391

Query: 429 RAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A++    G    I +    +A   A +   + D L+  
Sbjct: 392 LAQLFRDCGCSDVIAEPEIPKAFVQARK--KQGDGLLFC 428


>gi|254468795|ref|ZP_05082201.1| folylpolyglutamate synthase/dihydrofolate synthase [beta
           proteobacterium KB13]
 gi|207087605|gb|EDZ64888.1| folylpolyglutamate synthase/dihydrofolate synthase [beta
           proteobacterium KB13]
          Length = 381

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 105/369 (28%), Gaps = 4/369 (1%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           + K +  F  +L       I+ V GT+GK SV  ++ QI + S                 
Sbjct: 2   SLKRVQEFKQKLTLNPNFKIITVAGTNGKGSVCFYINQILKHSNYKIGLYTSPHFFDFNE 61

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           +    +                      S+       +   L  I +      ++    +
Sbjct: 62  RIVINSEKCSESEILQSLEYILGFDDSDSLTF----FEITTLAAILIFDNHNIDIAILEV 117

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                  A    +  +               D      V K       +   +G +    
Sbjct: 118 GLGGRLDAVNAFEPDISVITSIGLDHTEYLGDTLEKIAVEKSGVMRATKPCVIGDENCID 177

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            LK   +  N      + +       F       V    ++  +     +       +L+
Sbjct: 178 ILKNQASEINSIPYFFNKDFDSNIIPFDKSQLTYVQQKNLSCAIFSLHQLGLTEFTSNLK 237

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           +  +    F      S    + +D AH  +S++ ++ ++  + + +   VF    D+D  
Sbjct: 238 EELLQQDFFGRFHRISTKPEVIIDVAHNLDSVKNLVHSLLKLGNKKTYFVFSALKDKDIS 297

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
               + +     ++  I    +PR++    I   +      F    +   A   A+    
Sbjct: 298 SIIQLFEKFTYDSEWLISELSSPRAQKLSLIEQHLQKNNYIFDSADSIKRAYELALNKAL 357

Query: 458 KQDVLVVAG 466
             D +VV G
Sbjct: 358 NDDRIVVFG 366


>gi|322436296|ref|YP_004218508.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
 gi|321164023|gb|ADW69728.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX9]
          Length = 463

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 131/408 (32%), Gaps = 40/408 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VV+S+   +D    + +    + V    + L+      YG      +AV G  GK++  
Sbjct: 74  VVVTSSAVSKDNPEVLEARARKIPVIQRAEMLAELMRLKYG------IAVAGMHGKTTTT 127

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           S +  +    GL    +     + +   + RL T         ++       + + +   
Sbjct: 128 SMIAAVLAGGGLDPTVV-VGGRVDALGSNARLGTS-----QYLVAEADESDRSFLKLS-- 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                         I    TNL R+H D + T      A    F + LP         D+
Sbjct: 180 -------------PILAVVTNLDREHTDCYPTMDDVD-AAFLQFMDALPFYGATTACIDN 225

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + ++ R                 + +                      F   +PG  
Sbjct: 226 ERLRGILPRVRRKVYTYGESHDADFRLEMLPGVDGVRSTFEVNYRGLLLGPFELHVPGRH 285

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NA  A  + + +GID A + + L     V  RF+  G    G  +  DY H    + 
Sbjct: 286 NVLNATAAIAVGVQLGIDPASIAKGLATFRGVDRRFQLKG-TVGGIAVVDDYGHHPTEIT 344

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK--IALDLADIAIVTDDNPRSEDP--- 425
             LK  R    GR++VVF     R    R +M +   A   AD   + D    SE P   
Sbjct: 345 ATLKAARDCGYGRVLVVF--QPHRYTRTRDLMPEFAAAFGDADAIQILDIYAASEQPIPG 402

Query: 426 ---EKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E +  +I            +   AI          DV++  G G+
Sbjct: 403 ITGEALAQQIAQQTDGRATYAPSVAAAIAALTAQARPGDVIMTLGAGN 450


>gi|170739957|ref|YP_001768612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium sp. 4-46]
 gi|168194231|gb|ACA16178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           sp. 4-46]
          Length = 460

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 96/328 (29%), Gaps = 34/328 (10%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
                 +  P++   +   F    A+          +A+TGT+GKS+  + +  + + +G
Sbjct: 86  VKRAAEAGVPVIG--DIELFCRERAA---SAPDAPFVAITGTNGKSTTTALIAHVLRETG 140

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
                 G   T               + LA               +E SS  +D      
Sbjct: 141 HDVQMGGNIGTA-------------ILSLAPPSRDRVH------VIEMSSFQIDL--TPT 179

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G   N+  DH+D H T + Y        +E L   +   +   D      +    
Sbjct: 180 LAPSIGVLLNVTPDHLDRHGTMENYA-----AIKERLVAGADHAVIGVDDDYTRAISARR 234

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
           +     + VG   +   +     +             D   +  L G     NA VA  +
Sbjct: 235 DGPLTRVHVGEGAEAPGILARHGLLIDGTAEPPAPVADLTGIASLRGAHNWQNAAVAYAV 294

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +G+        L     +P R E VG       I    A  ++S E  L     +  
Sbjct: 295 ARGLGVAPDAFARALRSFPGLPHRMEEVGRRGGVLFINDSKATNADSTEKALAAFPRVHW 354

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDL 409
              I+         +  R    +IA   
Sbjct: 355 ---ILGGKPKEGGIESLRAYFPRIARAY 379


>gi|46908272|ref|YP_014661.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47094495|ref|ZP_00232169.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. 4b H7858]
 gi|226224642|ref|YP_002758749.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Listeria
           monocytogenes Clip81459]
 gi|254826208|ref|ZP_05231209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J1-194]
 gi|254854027|ref|ZP_05243375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL R2-503]
 gi|254933464|ref|ZP_05266823.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes HPB2262]
 gi|255520494|ref|ZP_05387731.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J1-175]
 gi|300765471|ref|ZP_07075452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL N1-017]
 gi|60390485|sp|Q71XX7|MURD_LISMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46881543|gb|AAT04838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017132|gb|EAL07991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. 4b H7858]
 gi|225877104|emb|CAS05816.1| Putative UDP-N-acetylmuramoylalanine D-glutamate ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607419|gb|EEW20027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL R2-503]
 gi|293585026|gb|EFF97058.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes HPB2262]
 gi|293595449|gb|EFG03210.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J1-194]
 gi|300513782|gb|EFK40848.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL N1-017]
 gi|328466096|gb|EGF37266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 1816]
 gi|328472684|gb|EGF43542.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 220]
          Length = 455

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 97/283 (34%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGARD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++       A I          
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKALIVF-------G 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGID-VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|306822431|ref|ZP_07455809.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           ATCC 27679]
 gi|304553976|gb|EFM41885.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           ATCC 27679]
          Length = 532

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 118/429 (27%), Gaps = 44/429 (10%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V SSA    +    A   +   I+   +    L            +  + V G  
Sbjct: 99  GARTVVFSSAIKPDNPEIVAAYEAGERIVHRSDILALL---------MQSKRAVTVAGAH 149

Query: 125 GKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GK++ +S +  I   +G       S    G          D        + +A+A     
Sbjct: 150 GKTTTSSMLAHILVNAGEGELADPSYAIGGSIQGKDGATLDGGHAGKGSVLVAEADESDG 209

Query: 179 SQGVTHVSVE----ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S    H  +     A +  LD +  +     A                      A +R  
Sbjct: 210 SFAKYHPEIAIITNAEADHLDHYGTEAKYRAAFVEHAGRAGKAVIMCGDDDGALAVLRAL 269

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  + +              ++       G   + +  + +         I +     + 
Sbjct: 270 KTEVARHVVVYSTQPSEDLGDL------NGAAHVRIESESESAQSGTEHFILHLPAGLVD 323

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           VE +       +PG     NA  A    + +G+D                RF+  G+ ++
Sbjct: 324 VEERRVPVTLTVPGIHNARNATAALLATVMLGVDVERAAAAATSFLGAARRFQIRGSVNQ 383

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DYAH    +  +L   R       I V        R         +     AD 
Sbjct: 384 -VTVIDDYAHHPTEIAALLDAARRRYPEAGIHVIFQPHLFSRTMFFAREFAEALAK-ADD 441

Query: 413 AIVTDDNPRSE--------DPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQ 459
            IVT   P  E         P+ I  E +               +   A +  +   +  
Sbjct: 442 VIVTGIFPAREKQEDFPTVSPDTIVNEAVKLEHEPADDWIRGVDDMRTAAQMMVMRAHHG 501

Query: 460 DVLVVAGKG 468
           DV+   G G
Sbjct: 502 DVIFTVGAG 510


>gi|294142404|ref|YP_003558382.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shewanella violacea DSS12]
 gi|293328873|dbj|BAJ03604.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shewanella violacea DSS12]
          Length = 476

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 110/358 (30%), Gaps = 20/358 (5%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             +LA++GT GK+S +S +  I +  G    F IG        +     +    +   + 
Sbjct: 107 RWVLAISGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGNSPFFVVEADEY 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S    +    V  +A        R   I  +     ++  D     +            
Sbjct: 167 DSAFFDKRSKFVHYQA--------RTLVINNLEFDHADIFDDLKAIQRQFHHVIRTVPGE 218

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY-----QGKFIHLKKVCAIHNK 288
            + + PK+  A+    D       +        ++SV         K     ++ A    
Sbjct: 219 GKIIWPKDCEAVQQVIDMGCWSEQEVYAGNCADLVSVNKGSSAGDNKGTWSSQLIAADGH 278

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +              + L G+  V NA +A      +G+     ++ L +      R E 
Sbjct: 279 KFELFFDGESQGILDWALIGQHNVENATMAIAAARHVGVKPLAAIQALAQFEPPKRRMEL 338

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR--DQGKRPIMGKIA 406
           +GT   G  +Y D+AH   ++   L+  R       I +           G        +
Sbjct: 339 IGTIK-GIDVYDDFAHHPTAIATTLQGCRAKVGEAKITIILEPRSNTMKSGVHKDTLANS 397

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + LAD A +   +    D   I A +           +  E +       N  D ++V
Sbjct: 398 MSLADEAYLYQGDSIDWD---IEAAMEKAELPVSVLYDIDEIVAAVANKANSGDTIIV 452


>gi|313622984|gb|EFR93280.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria innocua
           FSL J1-023]
          Length = 461

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 88/282 (31%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QYISMELSSFQL--MGVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTADDF 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +     +  +++    +          E      
Sbjct: 227 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLEQGSYVQNGNIM-------FDDEVIGSRD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 279 SILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRTQFVVEWQGRKFYNDSK 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A     +      +R       +V+   G DR      ++       + I          
Sbjct: 339 ATN---ILATQSALRGF--KNPVVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------G 386

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               +   A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|254228476|ref|ZP_04921902.1| FolC bifunctional protein [Vibrio sp. Ex25]
 gi|262393649|ref|YP_003285503.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           Ex25]
 gi|151939064|gb|EDN57896.1| FolC bifunctional protein [Vibrio sp. Ex25]
 gi|262337243|gb|ACY51038.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           Ex25]
          Length = 420

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 102/369 (27%), Gaps = 25/369 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +         + + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRING----VDVV 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
            A    +   V     + S    +   L  +++      ++    +       A      
Sbjct: 102 DAKHCEAFDYVEKQRGDISLSLFEFGTLAALRIFQAEKVDVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF-----------IHLK 280
            +               DD       K       +    G                    
Sbjct: 162 DVSVITSLAIDHVDWLGDDINVIGFEKAGIYRPGKPAICGQPTPPATVAAHADDIGSEFF 221

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +V   ++ Q      +     F         +     A  L      +  +   ++    
Sbjct: 222 QVGIQYDYQLTNNGWKWSSGAFALEDLPVPSLPLQNAATALMALGASELQITDINIVNGL 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKR 399
                   +        I +D AH  +S E +++ ++    G+ I +V     D+D    
Sbjct: 282 NNARLAGRMQVLHHEPEIVLDVAHNPHSAEYLVERVKHQYLGKNIHIVVAMLHDKDIKAT 341

Query: 400 PI-MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLN 457
              +  IA      A +T   PR         E+   +P   +   N ++A  +A     
Sbjct: 342 IEALTPIATQWY-PASLT--GPR----AATADELCQYLPDGQVHFENPVDAFESARSHAK 394

Query: 458 KQDVLVVAG 466
             DV++V G
Sbjct: 395 TGDVILVVG 403


>gi|261211959|ref|ZP_05926245.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           RC341]
 gi|260838567|gb|EEX65218.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio sp.
           RC341]
          Length = 421

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 110/367 (29%), Gaps = 20/367 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +        P  + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINGQDLPDEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    VS+     G    L       + ++       GR             
Sbjct: 106 TQAFAHIEQQRGEVSLSLFEFGTLAALYLFEQRKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVT----ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +        ++   +   F         +     A  L         +    + +     
Sbjct: 226 QFSYEKTSEMTWHWRSGRFELTDLPIPSLPLPNAATALMALGCSGLEISDLDIVEGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   SR   I +D AH  +S   ++  ++     + I +V G   D+D      +
Sbjct: 286 QLAGRMQLISREPTIVLDVAHNPHSAHYLVDQLKQRYPQQTIHLVLGMLQDKD------I 339

Query: 403 GKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQ 459
               ++L    +VT   P S          ++   +P G I+  N + A   A+   + Q
Sbjct: 340 ASTVMEL--NPVVTHWYPASLSGPRAATAEQLCQYLPVGNIQYANPVAAFEAALTQASAQ 397

Query: 460 DVLVVAG 466
           DV+VVAG
Sbjct: 398 DVIVVAG 404


>gi|171318508|ref|ZP_02907660.1| UDP-N-acetylmuramate [Burkholderia ambifaria MEX-5]
 gi|171096294|gb|EDT41200.1| UDP-N-acetylmuramate [Burkholderia ambifaria MEX-5]
          Length = 461

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 106/356 (29%), Gaps = 24/356 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 103 KWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +       NL  DH D      A       L
Sbjct: 163 DTAFFDKRSKFV---------------HYRPRTAVLNNLEFDHADIFPDLAAIETQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +            DA  + + +   +   R    G          V         + 
Sbjct: 208 VRTVPGVGRLVTNGRSDALERVLARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSQ 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S       +     G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 268 SERVGAVAWQVQ--GDHNRMNALAAIATARHVGVPPAQAAESLASFRNVKRRMEVRG-SI 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLAD 411
            G  +Y D+AH   ++E  +  +R     +   +      R    K  +M  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPTSLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +     P   D     +   +           +    +++ +E     D ++V
Sbjct: 385 ADLVFGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARAGDHVLV 440


>gi|148240320|ref|YP_001225707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7803]
 gi|147848859|emb|CAK24410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 7803]
          Length = 463

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 124/364 (34%), Gaps = 31/364 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              +           + +TGT+GK++V   +Q +   +GL +   G              
Sbjct: 98  GEMSVAWDALSGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGH---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   LA  +   +      V +E SS+ ++      +    G +T L  DH++ H T
Sbjct: 148 ---SAAELALEVLQGTRPKPDWVVMEMSSYQIEA--AGEVSPRIGIWTTLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 A   +   LL +    ++ ADDA  ++        G R +S    G        
Sbjct: 203 LA----AYRAIKRGLLERAETPVLNADDADIRQHCGAWSRPGLRWVSGADDGPDKDSIHR 258

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +++ +  V+            PLPG+    N L+A    +   + ++ +   L     V
Sbjct: 259 ISVNAQGWVSQGERPLFPADALPLPGDHNRQNMLLATAAALEASVSASSIEAALRCFTGV 318

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E +G+           A   ++  + L++++       +V+   G  +     P +
Sbjct: 319 PHRLEPLGSVGGIPVFNDSKATNYDAAAVGLRSVQA-----PVVLLAGGQTKQGDADPWL 373

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN---KQ 459
             +   +  + +        E  + I      G    +   +   A+  A+ +       
Sbjct: 374 ELLQSQVCGVVLFGAG--AGELADLIETAGFSG--PVMHHADLNAAVPQALSLAKDFEAG 429

Query: 460 DVLV 463
            VL+
Sbjct: 430 SVLL 433


>gi|53729118|ref|ZP_00134082.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207507|ref|YP_001052732.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975477|ref|YP_001651070.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250498|ref|ZP_07336695.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244820|ref|ZP_07526919.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249218|ref|ZP_07531215.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251540|ref|ZP_07533447.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253774|ref|ZP_07535628.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256040|ref|ZP_07537828.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258231|ref|ZP_07539974.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260470|ref|ZP_07542165.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166222951|sp|A3MY91|MURC_ACTP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706335|sp|B0BRH8|MURC_ACTPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126096299|gb|ABN73127.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875578|gb|ABY68626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650486|gb|EFL80645.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854265|gb|EFM86471.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306858742|gb|EFM90801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861004|gb|EFM93010.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863258|gb|EFM95198.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865462|gb|EFM97357.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867691|gb|EFM99536.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869873|gb|EFN01655.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 475

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 129/418 (30%), Gaps = 48/418 (11%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA  +V SSA    +    A   +  P++      + L+      +G      +AV GT
Sbjct: 76  AGASVVVASSAIDDSNPEVRAAKEARIPVIQRA---QMLAEIMRFRHG------IAVAGT 126

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I       +                +           A +  S     
Sbjct: 127 HGKTTTTAMISMIYTE----AKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFL 182

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           H+    S                   TN+  DH+D +        A    F   LP    
Sbjct: 183 HLQPMVS-----------------VVTNIEPDHMDTYGGDFEQMKATYVKFLRNLPFYGL 225

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++ ADD    E+  +                   ++       +   T+     +   +
Sbjct: 226 AVMCADDETVIEIAPQVGRQVLTYGFSEKADY--RIEDYQQTGFQGHYTVVCPNGERIDV 283

Query: 304 F-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIY 359
              +PG+    NA  A  +    GI +  +L  L        RF+ +G+  R      + 
Sbjct: 284 LLNVPGKHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLV 343

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD 417
            DY H    +++ +K  R+    + +V+        + +       ++     D  I+ +
Sbjct: 344 DDYGHHPTEVDVTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQ-VDALIMLE 402

Query: 418 DNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                E P      + +   I + G    I   +  +      +++   D+++  G G
Sbjct: 403 VYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAG 460


>gi|329730007|gb|EGG66398.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU144]
          Length = 449

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 120/355 (33%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  I Q+S L+    G    ++S                   
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDIFQKSVLTGRLSGNIGYVASKV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 154 -AQEVKSDEYLITELSSFQLL--GIEEYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +           Q       K   I       I+
Sbjct: 211 KNQTKDDYLICNY----HQRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L       N L A    I  G+    +++ L     +  R +++GTN  
Sbjct: 267 TKDLVLPGEHNL------ENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRLQYIGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L +         I+    G DR                D  I
Sbjct: 321 NKYYNDSKATNTLATQFALNSFDQ-----PIIWLCGGLDRGNEF------------DELI 363

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  +K            I+  +  +A+    +++   DV+++
Sbjct: 364 PYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLL 418


>gi|307298495|ref|ZP_07578298.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915660|gb|EFN46044.1| UDP-N-acetylmuramate/alanine ligase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 447

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 73/209 (34%), Gaps = 10/209 (4%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH++++           R F   + K       ADD  S+ +       
Sbjct: 168 PDYAVITNVRGDHLEHYDNSFDNLKNHFRYFSRSVGKLLV--TNADDPASERIFTDTLTF 225

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
           G       +  +   +        +    +        F   +PGEF VYNA  A  L  
Sbjct: 226 GKDRGYYRFTDRSTGIMNQTFRCFRGNEDL------GLFKLMIPGEFNVYNATAAIALTH 279

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVG-TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            +G+    +   LE    V  RF F G  + R    + DYAHT + +   ++  R    G
Sbjct: 280 EMGVPIESIKNSLESYRSVDRRFTFRGLDDFRNLFFFDDYAHTPDEISNTIRGAREFFPG 339

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
           + ++V        +  R   G+ A  L D
Sbjct: 340 KNVIVVFQPHRYSRLVR-ENGRFANSLKD 367


>gi|304385267|ref|ZP_07367612.1| dihydrofolate:folylpolyglutamate synthetase [Pediococcus
           acidilactici DSM 20284]
 gi|304328474|gb|EFL95695.1| dihydrofolate:folylpolyglutamate synthetase [Pediococcus
           acidilactici DSM 20284]
          Length = 424

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 6/152 (3%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLH-VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            A  L    G   +        L    PGR E +        + +D AH    ++ + ++
Sbjct: 263 AAVVLSRQRGWKLSADQIRRASLQARWPGRMEIMQQAPL---VVLDGAHNLPGVQALKQS 319

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
           ++T    R I +     D D+  +P++ ++         +T+  N       +    + +
Sbjct: 320 LQTYWQDRPIHILAAILD-DKLFQPMIDELLTIPNAQLTLTNFQNLLHRQVVQPAELVAN 378

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  + N   A+R  I+  N +DV+++ G
Sbjct: 379 EARQINYEANWRTALRQLIKQANPRDVVIITG 410


>gi|191638274|ref|YP_001987440.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           casei BL23]
 gi|226711915|sp|B3WDY1|MURD_LACCB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|190712576|emb|CAQ66582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus casei
           BL23]
 gi|327382306|gb|AEA53782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei LC2W]
 gi|327385501|gb|AEA56975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei BD-II]
          Length = 459

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 100/339 (29%), Gaps = 21/339 (6%)

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
              V+         +   +        + +  + +       I +  +           +
Sbjct: 106 AYQVSEAQWIGITGTNGKTTTTTLIGLMLNQQRPHHAFDAGNIGIPVSQVAQKVGKDDTI 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             E SS  L    +  +       TN+   H+D+H  +  Y  AKMR+     P +   +
Sbjct: 166 VAELSSFQL--CGIKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIM 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            +       E+ K++            +G    L           +T   +         
Sbjct: 224 NWDL-PEMHELAKQSKAQIVPFSRKNAEGARAQLID-------GWLTFDGDRIMKASEMQ 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG   + NAL A       G+    + E L     V  R +++ T           A  
Sbjct: 276 IPGLHNIENALAAIAAVKLEGVGDDAIREVLRTFSGVKHRIQYLETIDGRRVYNDSKATN 335

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +  + L           IV    G DR      +   +   +  + +     P     
Sbjct: 336 VEAATVALNAFDQ-----PIVWLAGGLDRGLPMDALTPLVKKHVKSMVVFGQTAPLM--- 387

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            KI  +   G+P      N + A+  A E+    DV+++
Sbjct: 388 AKIGKD--AGVP-VQTTENVMTAVPLAYEVSRPGDVILL 423


>gi|16330305|ref|NP_441033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechocystis
           sp. PCC 6803]
 gi|3122410|sp|P73668|MURD_SYNY3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1652794|dbj|BAA17713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechocystis sp.
           PCC 6803]
          Length = 452

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 134/396 (33%), Gaps = 39/396 (9%)

Query: 74  SSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
            +       S  +  + P+LV   +   +            H    + +TGT+GK++  S
Sbjct: 63  EAWPERIVVSPGVPWDIPLLVAAREKGVEVTGELELAWQYLHAVPWVGITGTNGKTTTTS 122

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            VQ I Q++GL++   G     +                      L +Q    +  E SS
Sbjct: 123 LVQAIFQKAGLNAPACGNIGYAACELV------------------LQNQNYDWIVAEISS 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           + ++      +    G +T    DH+  H+T + Y      +   LL + +  ++  DD 
Sbjct: 165 YQIESSPT--LAPQIGLWTTFTPDHLSRHKTLENY----FNIKASLLSRSAIQVLNGDDP 218

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEF 310
           +        +       + G             ++ +     +          F +PG+ 
Sbjct: 219 HLHSHGPNLYPQAHWTSTQGANHLAGLCDPKQGVYLQDNWVNAFGELIAPINLFKMPGQH 278

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L+A       GID   + E L     VP R E + T +    I    A   ++ E
Sbjct: 279 NQQNLLMAIAAARLAGIDKKAITETLLTFTGVPHRLEPICTINGVQFINDSKATNYDAAE 338

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           + L +++        ++   G  ++   +  + +I      + ++ D  P      K   
Sbjct: 339 VGLSSMKG-----PTILIAGGEAKEGDDQAWLAQIRQKAVAVLLIGDAAPNFATRLK--- 390

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--VLVV 464
               G   +        A++  +E+ +K +   +++
Sbjct: 391 --AVGYENYEIVETMANAVQRGLELASKNNASAVLL 424


>gi|313203972|ref|YP_004042629.1| udp-N-acetylmuramate--L-alanine ligase [Paludibacter
           propionicigenes WB4]
 gi|312443288|gb|ADQ79644.1| UDP-N-acetylmuramate--L-alanine ligase [Paludibacter
           propionicigenes WB4]
          Length = 479

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 111/360 (30%), Gaps = 22/360 (6%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           S  P +        L +    +   HP+              A  +  I ++S       
Sbjct: 79  SEIPFVYTK-PENTLVILTPAIPANHPQLKYFQANNYSIQKRAQVLGDITRQSKGIC-IA 136

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH-----GLDQHRLDG- 201
           G     ++      L   S +     L  +++   T++ + A S+       +  R    
Sbjct: 137 GTHGKTTTSTIAAHLLYQSQVSCNAFLGGIANNYNTNLLLSAESNLVVIEADEYDRSFHQ 196

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       T+   DH+D ++T  A+  +       + P  +  +    D     V +   
Sbjct: 197 LSPYMAVITSADPDHLDIYETADAFRESFEHFTSLIRPGGALVMRKGID----IVPQLQK 252

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                  S+   G F                ++   +  D    +P +  V N++ A  L
Sbjct: 253 GVKLYTYSMNDGGDFTAENIRTVNGEIHFDFVTPNDRLSDVRLGVPVQINVENSVAAMAL 312

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G+    +   +     +  RF  V   S       DYAH  + L+  + +IR +  
Sbjct: 313 AWLNGVSFDELRTGISSFSGIYRRFNVV-YKSDKIVYMDDYAHHPSELKASIASIRNLYP 371

Query: 382 GRIIV-VFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEII 433
            R I  VF      R +       +    L D  I+ D  P  E      D + I  ++ 
Sbjct: 372 NRKITGVFQPHLYTRTRDFATAFAEALSQL-DELILLDIYPARELPIEGVDSDLILRDVK 430


>gi|242309750|ref|ZP_04808905.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523751|gb|EEQ63617.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 362

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKI-NEVSSDSRHIQAGWIFVAIVGNKEDGHLF 59
           MK ++ I     E++       +        N++  D + I+ G +FVA      D    
Sbjct: 1   MK-KNGIQLSVNEIVEITYGTLLNQPSISFFNQICDDVQKIKKGDLFVA-----RDSKD- 53

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
           I +A+ +GA  I+ S   ++ D      S    + V+N  + L       
Sbjct: 54  ISKAVQEGAFGILFSDEIAMSD------SEVAWIYVENLDEALVRILRHY 97


>gi|172041054|ref|YP_001800768.1| dihydrofolate synthase / folylpolyglutamate synthase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852358|emb|CAQ05334.1| dihydrofolate synthase / folylpolyglutamate synthase
           [Corynebacterium urealyticum DSM 7109]
          Length = 545

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V        +++D +H  +    + K + R     R+I V    GD+D   R I
Sbjct: 400 PGRLERVRATPS---VFIDASHNPHGAAALAKAVDRDFDFRRLIGVVAVLGDKDA--RGI 454

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLN-- 457
           +  +   L D+ I    +PR+   + +        G            A+ TAI++    
Sbjct: 455 LAALEPVLDDVVITEVQSPRALPVDVLAEYARDAFGEERVHVAEQLPTAVETAIQLAEDD 514

Query: 458 -----KQDVLVVAG 466
                    ++V G
Sbjct: 515 SDGMLAGAGVLVTG 528


>gi|331002502|ref|ZP_08326020.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410318|gb|EGG89752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 448

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 89/306 (29%), Gaps = 34/306 (11%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +        +   +   +E SS  L+   +   K    +  N+  DH++ H T + Y 
Sbjct: 140 IGIPYTDIADKTDENSVTVLETSSFQLET--IIDFKPKISAILNITPDHLNRHHTMENYI 197

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                   +   + +  I+  +D   +E  K          S     K  +L     +  
Sbjct: 198 KV-KEDISKNQDENNFCILNYEDVILREFAKNVKAKVVFFSSKTKLDKGFYLDNDIIVKA 256

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +      +   +      + G     N + A  +  + G+    +++     H V  R E
Sbjct: 257 ENGKVSKILDTN---KLNILGRHNYENVMAAIAIAESYGVPMENIVKSCYDFHAVEHRIE 313

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---------GRIIVVFGCGGDRDQGK 398
           FV   +             ++    +  + + T                    G +   K
Sbjct: 314 FVKEVNGVKYYNDSKGTNPDAAIQAVLAMPSFTYIIAGGYDKGSEYDEWIESFGGK-VKK 372

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             +MG  A ++AD A     N              HG        +  EA+         
Sbjct: 373 LILMGATAKNIADCA-----N-------------RHGFKDIDMVNSMEEAVNICAREAKS 414

Query: 459 QDVLVV 464
            + +++
Sbjct: 415 GEYVLL 420


>gi|229163681|ref|ZP_04291629.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803]
 gi|228619818|gb|EEK76696.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus R309803]
          Length = 436

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYYPDYAIMTNIDFDHPDYFSDINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|291518352|emb|CBK73573.1| UDP-N-acetylmuramate--L-alanine ligase [Butyrivibrio fibrisolvens
           16/4]
          Length = 414

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 67/225 (29%), Gaps = 4/225 (1%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                      N+  DH+D+ +       A  R F E    +   II  +        + 
Sbjct: 154 HSFFPKYNIILNVEADHLDFFKNLDNVR-ASFRKFAENTSDDGALIINNEIDNVSYFTEG 212

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                      G                   V +            +PG+  + NAL A 
Sbjct: 213 LKCKVITYALHGDADIVPTEISYNEKGFASFVPVYKGQALERITLNVPGDHNISNALSAI 272

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            LC+ +G+D + +   L K      RFE  G   +G  +  DYAH    +   L      
Sbjct: 273 VLCLEMGVDYSCIKTGLSKFGGAHRRFELKG-IYKGATVIDDYAHHPTEIRASLAAAANY 331

Query: 380 TSGRIIVVF-GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              RIIV F      R         +     ADI I+ D     E
Sbjct: 332 PHNRIIVCFQSHTYTRTLSLLDDFAEALSA-ADIVILPDIYAARE 375


>gi|256842884|ref|ZP_05548372.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614304|gb|EEU19505.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 459

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 114/393 (29%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y           N PI+        LS              + VTG++GK++     Q+
Sbjct: 84  PYENPMVQKAEELNIPIITEPEV--ALS--------CSDAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKSGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +      A+  
Sbjct: 176 FQL-LGVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQNSNDYFI---ANYD 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K    +  ++ +                   Q   I            LPG   
Sbjct: 232 QKDILAKEKEVSPAKMQTFSETDHNADYFIGDEYLESQNEKIMK-----ISDIKLPGIHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 287 LQNSLVAIAISKIMGADNDDIAAVLSTFTGAKHRLQYVTTLDGCKVYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +        ++       E    +   
Sbjct: 347 AIPSFKQPE-----VLIAGGLDRGFTFDDLVP-LFKKHVKSIVL-----YGETRYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E++   DVL+
Sbjct: 396 ARKAGIKDIVIVNTLQEAVPRAWELVEPGDVLL 428


>gi|152990540|ref|YP_001356262.1| hypothetical protein NIS_0793 [Nitratiruptor sp. SB155-2]
 gi|151422401|dbj|BAF69905.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 319

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 19/114 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+LQ ++     +L+N  SI        K   +S+    ++ G +FVA   +K+D    +
Sbjct: 1   MRLQSILSLTGGKLLNSPSI-------AKFYSISTSLEELKRGDLFVAF--SKKD----V 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
             AI +GA  I+      + D           + VDN    +         +  
Sbjct: 48  DDAIQKGAYGILHEGPIQISDSETA------WIRVDNLDDTMIKLVRFFMIQKS 95


>gi|114570630|ref|YP_757310.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Maricaulis
           maris MCS10]
 gi|114341092|gb|ABI66372.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maricaulis maris
           MCS10]
          Length = 474

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 124/409 (30%), Gaps = 51/409 (12%)

Query: 68  AEAIVV-----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  I+      +                P++   +   F    A     + P  ++ +TG
Sbjct: 67  AALILSPGIPLTHPKPHHMVELARAVEAPVIG--DIELFAQALADLPEKRRP-KVIGITG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  + +  I + +G +    G                   I              
Sbjct: 124 TNGKSTTTALIGHILRATGRNVVVGGNIG--------------DAILAQSPPR-----PG 164

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
           ++  +E SS+ LD      +        N+  DHID H     YF AK RLFE       
Sbjct: 165 SYYVLELSSYQLDL--THTLACDVAVLLNVTPDHIDRHGDFDGYFRAKKRLFEM-QKPGG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI---SVEGKD 299
            A++  DD  +                +      +  + V A+ ++    +   S    D
Sbjct: 222 LAVVGIDDNTTSAYYSALRRQRREEEVIPISAGRVFARGVYALGDRVYDALDCASHPIVD 281

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              +  LPG     NA  A     A+G+      + +     +P R E V T +    + 
Sbjct: 282 LAKVPTLPGRHNAQNAAAALATVRALGVAGRAAADAITTFPGLPHRQERVATINGVTYVN 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
              A      E  ++ +      R I+            +P   ++A       I     
Sbjct: 342 DSKATN---AEAAVQALGCYERVRWIIGGRAKAGGLSAAKPQFHRVAKAY---LI----- 390

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML----NKQDVLVV 464
              E  E    E+   +P     G+   AI  A            V+++
Sbjct: 391 --GEASESFGRELDGELPN-ESCGDLAGAIAAATRDALAEGGSGQVILL 436


>gi|77462655|ref|YP_352159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
 gi|122063256|sp|Q3J4M6|MURD_RHOS4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77387073|gb|ABA78258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 465

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 123/417 (29%), Gaps = 62/417 (14%)

Query: 67  GAEAIVVSS------AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           G   +V S              +  + +  P+   ++   F   FA+R +    +   ++
Sbjct: 66  GVALLVTSPGIPHLYPAPNPVIARAMAAGVPV--DNDIGLFFRSFATRDWDAFDQMPRVV 123

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG++GKS+  + +  I   +G  +   G            R      + L        
Sbjct: 124 CVTGSNGKSTTTALIHHILSEAGRPTQMAGNIGRGVLDLDPARDGEVVVLEL-------- 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                      SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  
Sbjct: 176 -----------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGG 222

Query: 239 PKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           P  +   +   +    A    V                +     +        + +    
Sbjct: 223 PDRAVIGVDEPEGLYLAGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWRKGRQ 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   D   +  LPG     NA  A   C  +G+    +   L     +P R + VG    
Sbjct: 283 MASIDLRAMPGLPGAHNHQNACAAYAACRTMGLAPRQIEAALASFAGLPHRSQTVGEKGG 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKIALD 408
              +    A   +S    L+    I            +V          K  ++G  A D
Sbjct: 343 VRFVNDSKATNVDSAAKALQAFPKIRWIAGGLGKDGGIVALQPHLGSVVKAYLIGHSARD 402

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A     TD         +I   +   +    E+                 +V+++A
Sbjct: 403 FALQIGATD--------HEICETMERAVARAAEEA-------------QPGEVVLLA 438


>gi|47565112|ref|ZP_00236155.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241]
 gi|47557898|gb|EAL16223.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241]
          Length = 436

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQ---EMALRVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R IV         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREIVAVFQPHTFSRTEKFLNEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|289435377|ref|YP_003465249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171621|emb|CBH28167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 455

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 92/282 (32%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVKTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTEDDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGPRD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 SILLPGEHNLENVLASVAVAKTLGVANEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++       A I          
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKALIVF-------G 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|75760821|ref|ZP_00740837.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899844|ref|YP_002448255.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842]
 gi|228903207|ref|ZP_04067341.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           4222]
 gi|228941870|ref|ZP_04104416.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228967789|ref|ZP_04128805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228974796|ref|ZP_04135361.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981390|ref|ZP_04141690.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           Bt407]
 gi|226711859|sp|B7IKV4|MURC_BACC2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74491675|gb|EAO54875.1| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540867|gb|ACK93261.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9842]
 gi|228778590|gb|EEM26857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           Bt407]
 gi|228784924|gb|EEM32938.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228791943|gb|EEM39529.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228817804|gb|EEM63883.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228856489|gb|EEN01015.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL
           4222]
 gi|326942473|gb|AEA18369.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 436

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    S+         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMSQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFADINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|262275080|ref|ZP_06052891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Grimontia hollisae CIP 101886]
 gi|262221643|gb|EEY72957.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Grimontia hollisae CIP 101886]
          Length = 451

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 104/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK++ AS +  + +  G    F IG        +     +    +   
Sbjct: 101 KDRWVLAVAGTHGKTTTASMLAWVLEDCGYQPGFLIGGVPGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLNAIKRQFH 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +           DD  +  +     +        G       +            
Sbjct: 206 HLVRTVPGIGRIIAPSNDDNITSTLAMGCWSELEFAGEDGIWKAEKRVADGSEFDVWFDG 265

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K     + L G+  V NAL+       +G+   L  + L +      R E    
Sbjct: 266 KPVGTVK-----WDLIGDHNVSNALMTVAAARHVGVTPDLACDALGRFINTKRRLE-HKG 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
           +  G  +Y D+AH   +++  L  +R     R I+                 +IA  L  
Sbjct: 320 DFNGVTVYDDFAHHPTAIKTTLAGLRAKVGDRRILAVLEPRSNTMKLGVHKDEIAPSLDD 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV 464
           AD+ ++         PE I     ++        +  + I+A+   I    N  DV++V
Sbjct: 380 ADVVLLFQ-------PEHITWSVNDVAEACKAPAKTFDDIDALVAGIVSEANSGDVVLV 431


>gi|311742800|ref|ZP_07716609.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium
           marinum DSM 15272]
 gi|311314428|gb|EFQ84336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aeromicrobium
           marinum DSM 15272]
          Length = 495

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 119/378 (31%), Gaps = 50/378 (13%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G+     L VTGT+GK++    +  I +  GL S  +G        A  +   
Sbjct: 126 ELAWRLRGEDAAPWLGVTGTNGKTTTVQMLDAILRADGLRSAAVGNVGRPVLEAVMD--- 182

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P P  +              ++VE SS+ L       +   A +  N+  DH+D+H + 
Sbjct: 183 -PEPYDV--------------LAVELSSYQLHWS--SSLSCRASTVLNVAPDHLDWHGSH 225

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  AK R+++         +            +          ++G  G  +      
Sbjct: 226 VAYAAAKGRIYQHAQVACVYNVQDPATEQLVVDAEVVEGCRAIGFTLGLPGPGMIGLVED 285

Query: 284 AIHNKQQVTISVEGK-------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
            + ++  V              D            V +AL AA L  A G+    V + L
Sbjct: 286 VMADRAFVVDRQSNAAELGTLADLATPAGPAAPHVVADALAAAALARAHGVSQRAVRDGL 345

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                   R   V T      +    A    +    L++         +V    G  +  
Sbjct: 346 RGFSPDAHRIADVATIDAIRYVDDSKATNPAAALASLRSF------DHVVWIAGGLAKGA 399

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG---------NRIE 447
               ++G     L  + ++  D       + +R  +    P               +R+ 
Sbjct: 400 TFDDLVGTAREHLRGVVLIGTD------RDVVRDALRRHAPEVPVIEVLNGETDLMDRV- 452

Query: 448 AIRTAIEMLNKQDVLVVA 465
            +  A  +    DV+++A
Sbjct: 453 -VDAATSLARSGDVVLLA 469


>gi|90407782|ref|ZP_01215960.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
 gi|90311142|gb|EAS39249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
          Length = 445

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 133/401 (33%), Gaps = 59/401 (14%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP---ENILAVTGTSG 125
           + +VVS   +L   +     +    ++ +         +R+          ++ +TG++G
Sbjct: 64  KLLVVSPGIALATPALQQVKDAGCELIGDI-----ELFARVLKTPSYAHAKVVTITGSNG 118

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++V S + ++   S L+    G   T +    D  +                       
Sbjct: 119 KTTVTSLLGEMASASPLNVAIGGNIGTPALDLLDPNINL--------------------Y 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L+      +     +  N+  DH+D +++   Y  +K  ++++         
Sbjct: 159 ILELSSFQLET--TTSLNADIATILNISADHLDRYRSYDHYIQSKHIIYQQCKKALFNIE 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                  S  + +               G      ++   +N+  +++  E         
Sbjct: 217 DAQTKPLSCALDQICF------------GAENADFQLVKQNNETFISMGSETLLNVKKLK 264

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     NAL A  L  A+G+D  ++L  LE    +  R EFV        I       
Sbjct: 265 LSGRHNWMNALAALALGDAVGLDKNIMLAVLENYQGLEHRCEFVAQVHGVRWINDSKGTN 324

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK---RPIMGKIALDLADIAIVTDDNPRS 422
             + +  L  +    SG++ V+ G  G +       RP+  ++     DI          
Sbjct: 325 VGATQAALMGLSQSISGKVHVILGGQG-KGADFSLLRPVFNEV---QGDIFCF------G 374

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           ED   I        P      +  +A+  A +     D+++
Sbjct: 375 EDAALIA----SVDPRIQRVDDLAQAVCLAEQAATAGDIVM 411


>gi|312135289|ref|YP_004002627.1| folc bifunctional protein [Caldicellulosiruptor owensensis OL]
 gi|311775340|gb|ADQ04827.1| FolC bifunctional protein [Caldicellulosiruptor owensensis OL]
          Length = 437

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 15/158 (9%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N + A              L          GRFE + +      + +D AH  + + M++
Sbjct: 271 NCIYAYECLREKYDIKTEALVRGLLNARWNGRFEVLISTPL---VVLDGAHNVDGMRMLI 327

Query: 374 KNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAIVT----DDNPRSEDPEKI 428
           +N +T  S R IV V G   D++  K   M  +  +L    I T         SE+    
Sbjct: 328 ENCKTYLSSRRIVAVVGILKDKEYEK---MISLLKNLTGKIIFTLVPYQKRAFSEEEALD 384

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            ++      G     +  +AI+ A+ +  +   +++ G
Sbjct: 385 VSDRF----GLEFIADFKDAIKYALGLCGEDGAVIICG 418


>gi|282851650|ref|ZP_06261015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
 gi|282557618|gb|EFB63215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
          Length = 446

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/389 (12%), Positives = 108/389 (27%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        ++ N P++            A  +        + VTG++GK++     Q+
Sbjct: 70  PYENPMVEKALKLNIPVITEP-------EIALNVSEAP---YVCVTGSNGKTTTVMLTQR 119

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I                 +    +  +     +  A     L  +  +   +  +     
Sbjct: 120 IMDHHLSK------NGGHAYAVGNIGVPISEVVEKATDKDLLVVEMSSFQLLGVTDIK-- 171

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  I   + N+  D+                   +       A     +   +E
Sbjct: 172 ----PKVAAIVDIYNNVHLDYHKTFDNYVEAK--LRITQSQDQNDYFIANFDQKNILDRE 225

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K          +      FI  + + +  + Q + IS           +PG     N 
Sbjct: 226 LKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIMKISD--------IKIPGIHNQQNC 277

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G D + +   L        R ++V T +         +    +  + + +
Sbjct: 278 LVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPS 337

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IH 434
            +        V+   G DR      ++  +        ++       E    +       
Sbjct: 338 FKEPE-----VLIAGGLDRGFMFDSLVP-LFKKYVKSIVL-----YGETKYLLADAARKA 386

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A E+    DV++
Sbjct: 387 GIKDIVIVNTLQEAVPRAYELSEAGDVIL 415


>gi|229175402|ref|ZP_04302917.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3]
 gi|228608234|gb|EEK65541.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus MM3]
          Length = 436

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       FNA     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFSDINDVFNAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|188585042|ref|YP_001916587.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349729|gb|ACB83999.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 465

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 97/292 (33%), Gaps = 26/292 (8%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH++++           R F E +       IY++  Y   +++     
Sbjct: 173 PQIAVITNIEADHLEHYNGSFDQLLKSYRQFIENIDDSGKVFIYSECEYHDYLLEGMSKN 232

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLC 322
                    Q        +       + TI  +    F     +PGE  + NAL AA + 
Sbjct: 233 CKTFGF--SQDADFRATDLKLNKGTTEFTIESDLADSFKVELMVPGEHNILNALAAASVA 290

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + + I    +   L+K      RF  +G    G  I  DYAH    ++  LK  +  +  
Sbjct: 291 LDLKISPTAIKRALQKFTGAKRRFMEIGQLQ-GATIVDDYAHHPTEIKATLKTAQEQSDN 349

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKIRAEIIH 434
           ++I +F     R    +  M   A     AD  I+       ED       + ++ +I  
Sbjct: 350 KVIAIF--QPHRFTRTQYFMDDFASSFEEADTVILHKVFAAGEDEIPGANSKNLKDKIKE 407

Query: 435 GIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG----------HETVHI 474
            +PG       +  +       +++K D ++  G G           E    
Sbjct: 408 NVPGLEVYVTDDMEDIAEIVSNIVDKGDYVITMGAGDIWKVAHWLVDEDYQK 459


>gi|332667280|ref|YP_004450068.1| FolC bifunctional protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332336094|gb|AEE53195.1| FolC bifunctional protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 427

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 103/387 (26%), Gaps = 35/387 (9%)

Query: 109 LYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--- 163
             G   +    + V GT+GK S +  +  I Q  GL +             +        
Sbjct: 38  FLGNPQQKFSTIHVGGTNGKGSTSHMLSAILQAKGLKTGLYVSPHYRDFRERIKVNGQYI 97

Query: 164 ---------------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
                                +   + +A A  Y +   V    +E    G      + I
Sbjct: 98  SRKYVIDFVEKMKPIIAEVQPSFFELTVAMAFDYFAKVKVEAAVIEVG-LGGRLDSTNVI 156

Query: 203 KLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +      TN+  DH+ +  +T     + K  + +  +P                  +  H
Sbjct: 157 RPELSVITNISFDHMQFLGETLPEIASEKAGIIKTNVPVVIGETHPESAPVFLAKAQEEH 216

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                                      Q   +       +                   L
Sbjct: 217 APIQFADQHYRAKLIGEDLYHTEFDVYQNEQLRYPALRCNLHGDYQVFNLQTVLQAVDCL 276

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             A GID  ++   L  L  +          ++   I  D AH    L + +  ++ I  
Sbjct: 277 PAAWGIDEKVIRTGLLDLKHLTRFMGRWQLLAQHPSIIADSAHNEAGLALAMNQLQKIPH 336

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGF 439
            ++ +V G   D+D  K   +  I     D        D PR  +   ++          
Sbjct: 337 RQLHLVIGVVKDKDLQKMIPLLPI-----DGIYYFAKPDIPRGLEATILQKAAAEQGRKG 391

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               +   A++ A      +DV+ V G
Sbjct: 392 KAYTSVKNALKAARRKAQPEDVIYVGG 418


>gi|259501661|ref|ZP_05744563.1| FolC family protein [Lactobacillus iners DSM 13335]
 gi|302191131|ref|ZP_07267385.1| folylpolyglutamate synthase [Lactobacillus iners AB-1]
 gi|259166946|gb|EEW51441.1| FolC family protein [Lactobacillus iners DSM 13335]
          Length = 421

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/402 (13%), Positives = 110/402 (27%), Gaps = 36/402 (8%)

Query: 88  SNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
            + P +   N   ++      L     +     +TGT+GK S A ++ ++ Q++G S   
Sbjct: 11  EHLPRIHQKNDLTYIRRILRELNEPQDKVKTFHITGTNGKGSTAYYLSRLLQKTGQSIGL 70

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL-DGIKLI 205
                      +      P    L  +        + ++  +     L        +   
Sbjct: 71  FVSPYVEVFNERIQINGQPISDELLISAYQAVKNAIRNIQKKYPEFNLVTFEFETAMAFW 130

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +  N     I+     +      +     ++                ++         
Sbjct: 131 IFAKQNCDYAVIEVGIGGEHDKTNVIVPQASIITTIGLDHEKIIGPTMFDIAHEKSGVIK 190

Query: 266 R-----------------VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +                 +     +   + L             +    K        P 
Sbjct: 191 KNRPVVLGNIPAKVLPLLMDKARKKNAPVLLLGRDFQVECNDDIVVTINKRLFHFKLRPQ 250

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL            S   +E      ++P R++ V        I +D AH   +
Sbjct: 251 AEAYDIALALITFATLKFDISVRDIEDTINNTIIPARYQIVQKKPL---IMIDGAHNIQA 307

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDN-PRSED 424
           +  ++  +R I  GRI ++ G   D+D  K        + L D       T  + PR+  
Sbjct: 308 VHELISYVRKIAQGRIYILLGMMKDKDIAK-------VVKLFDPKEKITFTRISYPRAAT 360

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              I  ++   I       +   A       L + D+LVV G
Sbjct: 361 KSDIEDDLNCHIN---FIDDYRLAYDILKNKLTQDDILVVTG 399


>gi|224534651|ref|ZP_03675223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           spielmanii A14S]
 gi|224513899|gb|EEF84221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           spielmanii A14S]
          Length = 451

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 124/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           +  GA+ ++       +     D                         +VV N       
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLRDFNDQIRYVLGKHDVNDFKKADIVVKNPSVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                A R           +   I++VTGT GKS++ S + ++ ++        G     
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIISVTGTKGKSTLVSLLYRVLKKKYPKVKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGRSPLILEL-------------------SSWQLQS--LENFNPILSIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +      +V+    
Sbjct: 189 YNDHQNYYSNFDDYIVDKSKIFVNQTSGIVIIQDKAYYKYFSKFESK-----AKVILFSE 243

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                  + +   +  +          F     +     +   L+A  +   + ID    
Sbjct: 244 FNPCDFNQDIFYSNKGEVYFNDKLIGSFYESKTVL----MTPKLIAFFVSYYLNIDLNHA 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           L+ L     +  R EFV             +   +S  + +K+++T      ++V G   
Sbjct: 300 LQILNNFKGIEHRLEFVKLVKNVLFYNDTASTIPDSTVLSVKSLKTNVGCINLIVGGTDK 359

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           + D      +  +      I I      +     KI   +      +    +  +A+  A
Sbjct: 360 NLDFSSFSKIINLVKAW--ILI------KGSATVKIINILKKSSIQYFVFDSLKDAVNYA 411

Query: 453 IEMLNKQDVLV 463
            ++ +  D+++
Sbjct: 412 FKISSPGDIVL 422


>gi|192359523|ref|YP_001983387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cellvibrio
           japonicus Ueda107]
 gi|190685688|gb|ACE83366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio
           japonicus Ueda107]
          Length = 455

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/400 (13%), Positives = 119/400 (29%), Gaps = 60/400 (15%)

Query: 71  IVVSS--AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+VS   A +         +  PI+                       ++A+TG++ KS+
Sbjct: 80  IIVSPGVAVATPALVQAREAGIPII---------GDI-ELFVRHARAPMVAITGSNAKST 129

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V + V ++ + +G+     G   T               + L +    L         +E
Sbjct: 130 VTTLVGEMAKAAGIQVAVGGNLGTP-------------ALELLRDDIEL-------YVME 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L+   ++ +     +  N+  DH+D +   +AY  AK+R++              
Sbjct: 170 LSSFQLET--VNKLNAKVATILNISADHLDRYPDMRAYILAKLRIYFGAENIVVNRNDIL 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSV----GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
                    K  +  G             G+    K +  +   +++ I       + L 
Sbjct: 228 THPPLAVGAKPVYFGGRADFGAFGLLDRDGEEYLAKNLTPLLPARELKIRGRHNIDNALA 287

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L         + A    +              +   +  R E+V +             
Sbjct: 288 ALALGDAAGIPMAAMLGAL-------------REFRGLRHRCEYVASIDGVEFYNDSKGT 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              +    +  +  + S   + V   G  + Q    +   +      + ++  D P    
Sbjct: 335 NIGATLAAINGLARVPSR--LFVIAGGDGKGQDFTELTASLVASRCVLVLIGRDAP---- 388

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              I + +   +P         +A+  ++ +    D +++
Sbjct: 389 --LIASAVGEQVP-VHVAQTLKDAVNLSLALATAGDAVLL 425


>gi|294635010|ref|ZP_06713527.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
 gi|291091609|gb|EFE24170.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
          Length = 476

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 131/423 (30%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A +  +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 68  ASVVVVSTAIAADNPEIIAAREARIPVI-----RRAEMLAELMRFRHG------IAIAGT 116

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 117 HGKTTTTAMVASIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 173

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +             F   LP    
Sbjct: 174 ------------------LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +  +           +       
Sbjct: 216 AVLCIDDPVIRELLPRVGRHVTTYGFSEDADVRIEEYR-QSGAQGGFFLCRQDRPRLAVT 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  AA + +  GID   +L  L        RF+F+G  S          
Sbjct: 275 LNAPGRHNALNAAAAAAVAMEEGIDDEAILRALSGFQGTGRRFDFLGEFSLQHVNNQPGQ 334

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     R +V+        R +        +     D+ 
Sbjct: 335 VMLVDDYGHHPTEVDATIKAARAGWPDRRLVMVFQPHRFTRTRDLYDDFANVLSQ-VDVL 393

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D  P  E P        +   I   G    +         +   + L   D+++  G
Sbjct: 394 LMLDVYPAGESPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQVLAQFLQDGDLILTQG 453

Query: 467 KGH 469
            G+
Sbjct: 454 AGN 456


>gi|308069882|ref|YP_003871487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
 gi|305859161|gb|ADM70949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
          Length = 473

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 75/415 (18%), Positives = 131/415 (31%), Gaps = 57/415 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V +                 I VV          A  L       I+ +TG++GK
Sbjct: 72  GVKLVVKNPGIPYTAPPVQKAVELGIEVVTEV-----EVAYHLCKAP---IIGITGSNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  ++V ++ + SG++    G   T                      + + ++    + 
Sbjct: 124 TTTTTWVGKLLEASGMNPIVAGNIGTPVCE------------------AAVDAKSDEWMV 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS  L        +       N+   H+DYH   + Y  A              A++
Sbjct: 166 VELSSFQLK--GTKDFRPTVACLLNVAETHLDYHGGMEDYV-ASKARLFANQTAADTAVV 222

Query: 247 YADDAYSKEV-----MKRAHNAGCRVLSVGYQGKFIHLKK----VCAIHNKQQVTISVEG 297
             DD   +E+      K    +    L  G      ++      +      +     +  
Sbjct: 223 NWDDPVCRELVPYIKAKLLPFSMTERLQEGVFADPPYIPDVTDDIERSIVYRDGNGVLHP 282

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                   LPG F V NAL A  + IA G + A + E L     V  R E+V  ++    
Sbjct: 283 IIGVAEIGLPGRFNVENALAACAIAIAAGAEPANLAEPLSTFRGVEHRLEYVLEHAGVAY 342

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                A  S +  M L + +       IV+   G DR      ++  +  +     ++  
Sbjct: 343 YNNSKATNSKATMMALSSFKQ-----PIVLIAGGLDRGSDYTELVPSL-QEGVKAVVL-- 394

Query: 418 DNPRSEDPEKIRA-EIIHGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
                E   K+       GI       N         EA+  A E     DV+++
Sbjct: 395 ---LGETRHKLAERAQQAGIEHVKVVDNGEDAAATLVEAVNKAAEFAETGDVVLL 446


>gi|325123865|gb|ADY83388.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 482

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 123/379 (32%), Gaps = 46/379 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH   P+ I   A  +VVS+A   ++          + +V   R+   L       +G  
Sbjct: 73  GHQ--PENIKN-ANVLVVSTAIDPENPEIKAAIEQRVPIV---RRAEMLGELMRYRHG-- 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S +  +        ++ IG                     +  
Sbjct: 125 ----IAVAGTHGKTTTTSLLTTMLAEENLDPTYVIGGLLN--------------STGVNA 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           AL             +AS           ++ +A   TN+  DH+D ++           
Sbjct: 167 ALGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFV 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DDA  +E++ R                      +     +   T
Sbjct: 219 QFLHNLPFYGLAVVCGDDANIREILPRVGRPVITYGFNEDNDI--RAVDIEQDGMQSHFT 276

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G++        PG   V NAL A G+    G+    +   LE    V  RF+  G 
Sbjct: 277 VLRKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDDAISRALEGFSGVGRRFQVQGE 336

Query: 352 N---SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
                   ++  DY H    +E  +K  R     R +V+        + +       ++ 
Sbjct: 337 FELADGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVL 396

Query: 407 LDLADIAIVTDDNPRSEDP 425
               D  ++ +  P  E P
Sbjct: 397 SQ-VDQLLLLEVYPAGEKP 414


>gi|313632489|gb|EFR99503.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria seeligeri
           FSL N1-067]
          Length = 470

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 91/282 (32%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 178 QYISMELSSFQL--MGVKTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTEDDF 235

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +          E      
Sbjct: 236 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FDDEVIGARD 287

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 288 SILLPGEHNLENVLASVAVAKTLGVANEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 347

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++       A I          
Sbjct: 348 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKALIVF-------G 395

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 396 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 437


>gi|260913004|ref|ZP_05919489.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
 gi|260632994|gb|EEX51160.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
          Length = 482

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 132/417 (31%), Gaps = 48/417 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +VVSSA    +           P++      + L+      +G      +A+ GT G
Sbjct: 84  ASVVVVSSAIKPDNIEVVTAKEKRIPVIQRA---QMLAEIMRFRHG------IAIAGTHG 134

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  +   +GL    +     + S   +  L                      +
Sbjct: 135 KTTTTAMISMVYAEAGLDPTFV-NGGLVKSAGTNAHLG----------------CSRYLI 177

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +    S     H    ++ +    TN+  DH++ +             F   LP    A+
Sbjct: 178 AEADESDASFLH----LQPMVSVVTNIEPDHMETYNGSFEEMKQTYVNFLHNLPFYGLAV 233

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
           + ADD   +E+M +                   ++       +   T+     +   +  
Sbjct: 234 LCADDPVLEELMPKVGRQVITYGFSEKADY--RIEDYQQTGFQGHYTVMTPSGERIDVLL 291

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVD 361
            +PG     NA  A  +    GI++  +L  L        RF+ +G   R      +  D
Sbjct: 292 NVPGRHNALNATAALAVAKEEGIENEAILAALADFQGAGRRFDQLGHFIRPSGKVMLVDD 351

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDN 419
           Y H    + + ++  R     + +V+        + +       ++     D  I+ D  
Sbjct: 352 YGHHPTEVAVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQ-VDALIMLDVY 410

Query: 420 PRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E P        +   I + G    I   +  +      ++L   D+++  G G+
Sbjct: 411 AAGEAPIAGADSRSLCRSIRNLGKVDPIFVSDHNQLGEILDQILQDGDLILAQGAGN 467


>gi|224536615|ref|ZP_03677154.1| hypothetical protein BACCELL_01490 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521706|gb|EEF90811.1| hypothetical protein BACCELL_01490 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 482

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 113/366 (30%), Gaps = 48/366 (13%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 135 HSSKGLCVAGTHGKTTTSTMAAHLLYQSHVGCTAF-LGGISKNYGTNLLLSQSSPYTVIE 193

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T    DH+D + T++AY  +   
Sbjct: 194 ADEFDRSFHWLSPYMSV-------------------ITATDPDHLDIYGTEEAYLESFRH 234

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
               +          A   +    +K    +G +V +        H + +          
Sbjct: 235 YTTLIQ------PGGALIIHKDIALKPDVQSGVKVYTYARTEGDFHAENIRIGNGEIFID 288

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G     +   +     V  RF+F   
Sbjct: 289 FVAPDTRINDIQLGVPVSINIENGVAAMALAHLNGATDEEIKRGMASFRGVDRRFDF-KI 347

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
            +       DYAH    +   +K+IR +   + I          +  R    + A  L+ 
Sbjct: 348 KNDKVVFLSDYAHHPAEIAQSVKSIRDLYQDKKITAIFQPHLYTRT-RDFYKEFADSLSL 406

Query: 411 -DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-------- 455
            D  I+ D  P  E P      + I   +  GI   +    R E I   +          
Sbjct: 407 LDEVILVDIYPAREQPIPGVTSQLIYDNLRPGIEKCMC---RKEDILNLLSQKKIEVLIT 463

Query: 456 LNKQDV 461
           L   D+
Sbjct: 464 LGAGDI 469


>gi|146291932|ref|YP_001182356.1| UDP-N-acetylmuramate [Shewanella putrefaciens CN-32]
 gi|145563622|gb|ABP74557.1| UDP-N-acetylmuramate [Shewanella putrefaciens CN-32]
          Length = 464

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 105/355 (29%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSACLGESAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A      
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQKQFN 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +  +          A  + +         +      +       K  +       
Sbjct: 209 HLIRTVPGEGKIIWPVDVQAVKQTI--DMGCWSEQEHYHTAESITGWYGKALSDDCHCFE 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  + NA++A      +G+  +  +E L +      R E +G 
Sbjct: 267 VFFDGESQGVLEWDLIGQHNIENAIMAIVAARHVGVKPSAAIEALAQFIPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   LK +R  +   +IIVV     +  + G        ++  
Sbjct: 326 TVNGISVYDDFAHHPTAIATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + +     +   +   +      E +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMK---EAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVV 437


>gi|311278724|ref|YP_003940955.1| FolC bifunctional protein [Enterobacter cloacae SCF1]
 gi|308747919|gb|ADO47671.1| FolC bifunctional protein [Enterobacter cloacae SCF1]
          Length = 422

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 16/128 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V    R   + +D AH  ++   +   ++ +   GR + V G   D+D      
Sbjct: 287 PGRFQIVSAAPR---LILDVAHNPHAAAYLAGRLKNLPKTGRTLAVIGMLHDKDIA---- 339

Query: 402 MGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            G +A   ++ D       + PR    E++   +  G           +A  TA+     
Sbjct: 340 -GTLACLTEVVDRWYCAPLEGPRGATAEQLVEHLRDG----EVYATVAQAWHTAMADARP 394

Query: 459 QDVLVVAG 466
           +D ++V G
Sbjct: 395 EDTVLVCG 402


>gi|291550011|emb|CBL26273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           torques L2-14]
          Length = 457

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 88/280 (31%), Gaps = 22/280 (7%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N+  DH++ H T +AY  AK  + +    K++  + Y
Sbjct: 170 EMSSFQLET--IQTFRPKVSAILNITPDHLNRHHTMEAYIEAKENIAKNQTEKDTCVLNY 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD                      +           +    + T      +      + 
Sbjct: 228 EDDVTKVFGENVKSKVLYFSSQRILEEGIYLENGQIVLAMNGEKTPVCHVDEL----NIL 283

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA+ AAG+  A G+   ++   L++   V  R E+V   +             +
Sbjct: 284 GTHNHENAMAAAGMAAAYGVPVDVIRRTLKEFQGVEHRIEYVAEKNGVVYYNDSKGTNPD 343

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV--TDDNPRSEDP 425
           +    ++        R  V+ G G D+D      +      +  + ++  T D       
Sbjct: 344 AAIKGIQA-----MNRPTVLIGGGYDKDSAYDEWIDSFDGKVKKLVLLGATRD------- 391

Query: 426 EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            KI       G           EA    +E     D +++
Sbjct: 392 -KIAETARAHGFEDIEMADTFEEAFAKCVENAKPGDAVLL 430


>gi|229828452|ref|ZP_04454521.1| hypothetical protein GCWU000342_00513 [Shuttleworthia satelles DSM
           14600]
 gi|229793046|gb|EEP29160.1| hypothetical protein GCWU000342_00513 [Shuttleworthia satelles DSM
           14600]
          Length = 481

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E V  + RG +I +D AH    ++ + K++R         VF  G   D+    +
Sbjct: 323 WPGRMERV--SYRGRQILIDGAHNPQGVDALAKSLRGFYP-DTTCVFIIGILADKEYDLM 379

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + +I    A++  VT D+ R+   E++ A I          G+  EA+  A ++  
Sbjct: 380 LEEILPLAAEVVTVTVDSDRALQAERLAALIRGRGGCAHRAGSVSEALELAADICK 435


>gi|254476425|ref|ZP_05089811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
 gi|214030668|gb|EEB71503.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
          Length = 468

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 132/418 (31%), Gaps = 51/418 (12%)

Query: 62  QAIAQGA----EAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
             +  GA     A+VVS      Y   +          + V ++   F    A+R + ++
Sbjct: 57  DLLKSGAFDDVAALVVSPGIPHLYPKPNPVIRAALVAGVPVDNDIGLFFRSVATRGWEQY 116

Query: 114 PE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
            +   I+AVTG++GKS+  + +  I Q +G  S   G                   + L 
Sbjct: 117 DQAPRIVAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDPPGSGGVVVLEL- 175

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                             SS+  D  R   +      FTNL  DH+D H     YF AK 
Sbjct: 176 ------------------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHAGMGGYFAAKR 215

Query: 232 RLFEELLPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           RLF E  P  +   +  D+    A                 S    G    +       +
Sbjct: 216 RLFAEGGPDRAIIGVDEDEGLYLAGQLSEAASDDRVIRISASQKLTGPGWQVFARKGFLS 275

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           + +        D   +  LPG     NA  A     A+G+   L+ + L     +P R +
Sbjct: 276 EYRKGRQAASIDLRQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRSQ 335

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            + T++    +    A   +S    L     I   R I     G +++ G   + G+   
Sbjct: 336 TIATHAGVRYVNDSKATNLDSAAKALGAFENI---RWIC---GGLEKEGGLDALRGQAGK 389

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                 I         +      ++              +A+  A       D +++A
Sbjct: 390 VRKAYVI-------GREAAGFAMQLDV---EAEVCITMAQAVARASAEAEPGDTVLLA 437


>gi|323970760|gb|EGB66014.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TA007]
          Length = 438

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPHASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
          Length = 437

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 119/394 (30%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R     +   +   +  ++
Sbjct: 161 SFQLET--TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLR-----IYHNAKVGVLNNE 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                             +      ++  +        +   I            L G  
Sbjct: 214 DRLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMVKDEVILP-----CEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+     +    I    A    S  
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLAHQANGIRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R        A
Sbjct: 329 AALAGL--YIEGKLHLLLGGDG-----KGADFSELAELINQPHIICYCFGRD------GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|30061655|ref|NP_835826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 2457T]
 gi|30039897|gb|AAP15631.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
 gi|313646529|gb|EFS10990.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
          Length = 438

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 139/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDCHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NALVA  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G +     P+          +  +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-KSADFSPL----------VRYLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|313633042|gb|EFR99962.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           N1-067]
          Length = 407

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 113/361 (31%), Gaps = 46/361 (12%)

Query: 59  FIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           F    I  G   I  ++   + ++    +    P++      KFL               
Sbjct: 13  FSADNIKSGLTIIAGNAFPDTHEEIERAMELGIPVIR---YHKFLGQLIDGYTS------ 63

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +   +        +   +   + 
Sbjct: 64  IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEY-----FALEACEYQRHF 118

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +   T+  +                      TN+  DH DY ++    FNA   L ++ 
Sbjct: 119 LAYKPTYAIM----------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ- 155

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+    D     + K   +        G + +F     +      +      + 
Sbjct: 156 ---VKKAVFALGDDVE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTRFDVYHRDE 210

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F  P  G+  V NAL    LC   G+    V   L+    V  RF           
Sbjct: 211 FLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSITDKG--NQV 268

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVT 416
           +  DYAH  + +   +   R     + IV         + +  + G   +L+LAD   + 
Sbjct: 269 LVDDYAHHPSEIRATVNAARQKYPDKKIVAVFQPHTFTRTRTFLQGFADSLNLADEVYLC 328

Query: 417 D 417
           D
Sbjct: 329 D 329


>gi|209696051|ref|YP_002263981.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
 gi|226706336|sp|B6ELH4|MURC_ALISL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|208010004|emb|CAQ80327.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
          Length = 487

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 135/410 (32%), Gaps = 58/410 (14%)

Query: 31  NEVSSDS---RHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFS--A 84
           ++V+ +S   R  + G  IF         GH      + + A  +VVS+A    +    A
Sbjct: 52  SDVAENSVTVRLAEKGADIFF--------GHH--ASNVEK-ASVVVVSTAIDQANPEIVA 100

Query: 85  TIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
              +  P++     R+   L+      +G      +AV GT GK++  +   QI   +GL
Sbjct: 101 AKENRIPVI-----RRAEMLAELMRYRHG------IAVAGTHGKTTTTALTTQIYSEAGL 149

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
               +     + +   + RL          A +  S     H+    S            
Sbjct: 150 DPTFV-NGGLVKNAGTNARLG---SSRFLIAEADESDASFLHLQPMVS------------ 193

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+  DH+D +             F   LP    A++  DD   +E++ R   
Sbjct: 194 -----IVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGQAVMCIDDDVVRELLPRVSR 248

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                         +   +     +   V    +  D D +  +PG+    NA  A  + 
Sbjct: 249 QVITYGFSDDADVRLINYRQEGQKSFFTVQ-RKDRTDLDIVLNIPGKHNALNATAAIAVA 307

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTI 379
               ++ + +L  L        RF+ +G    G     +  DY H    +++ +K  R  
Sbjct: 308 TEEDVEDSAILSALLNFEGAGRRFDQLGEFETGNGHAMLVDDYGHHPTEVDVTIKAARAG 367

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEK 427
              +  +V      R    R +    A   D  D+ I+ D     E P  
Sbjct: 368 WEDKR-LVMIFQPHRYSRTRDLYDDFANVLDNVDVLIMLDVYSAGEKPIA 416


>gi|166033152|ref|ZP_02235981.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
 gi|166027509|gb|EDR46266.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
          Length = 515

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 9/137 (6%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQG 397
            H    RFE+ G  + G  I  DYAH    +   L          I  +F      R + 
Sbjct: 369 FHGTDRRFEYKG-ETNGVTIIDDYAHHPTEIAATLTAATHYPHREIWCIFQPHTYTRTKA 427

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
             P   + AL   D  I+ D     E        ++I  E+           +  E    
Sbjct: 428 LFPEFVE-ALSHTDHVIMADIYAARETDTLGVSSKQIADELKAKGCDAYYFPSFEEIENF 486

Query: 452 AIEMLNKQDVLVVAGKG 468
            +    K DVL+  G G
Sbjct: 487 CLTHCQKGDVLITMGAG 503


>gi|300934273|ref|ZP_07149529.1| dihydrofolate synthase / folylpolyglutamate synthase
           [Corynebacterium resistens DSM 45100]
          Length = 547

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V +      +++D +H  +  E +   + R  +  R++ V G  GD+D      
Sbjct: 401 PGRLERVRSAPS---VFIDASHNPHGAEALAAAVARDFSFRRLVGVVGVLGDKDA---RG 454

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLN- 457
           +      + D  ++T   +PR+ D E +        G        N   A+  AIE+   
Sbjct: 455 ILAALEPIFDEVVITRTQSPRALDEETLAEYARDAFGEERVHVTTNLPGAVELAIELAED 514

Query: 458 KQD-------VLVVAG 466
             D        +++ G
Sbjct: 515 DGDEGMVSGAGVLITG 530


>gi|254382594|ref|ZP_04997952.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           Mg1]
 gi|194341497|gb|EDX22463.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           Mg1]
          Length = 481

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 136/423 (32%), Gaps = 48/423 (11%)

Query: 55  DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           DG     + + +G E +V S  +          +   + VV +      L  S   G+  
Sbjct: 64  DGA-HAGEVLPEGTELVVTSPGWKPDSPLFAAAAEAGVDVVGDVEIAWQLRGST-PGRKA 121

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              LA+TGT+GK++    +  I + +GL +  +G   T                      
Sbjct: 122 APWLAITGTNGKTTTTQMLASILKAAGLRTAAVGNIGTPIVDVVTGE------------- 168

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +    ++VE SS+ L       ++  + +  NL  DH+D+H + +AY  A  +  
Sbjct: 169 -----EEYDVLAVELSSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSMEAY--AADKGR 219

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  +     AD A    V +     GCR +          +  V       +  + 
Sbjct: 220 IYEGNTVACVYNVADRATEDLVGEADVEEGCRAIGFTLGAPGPSMLGVVDGILVDRAFVE 279

Query: 295 VEGKDFD-----FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              K+            P    + NAL AA L  A G++   V + L        R   V
Sbjct: 280 NRQKNAQELAEVKDVNPPAPHNIANALAAAALARAFGVEPRAVRDGLRNFRPDAHRVAHV 339

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                   +    A  +++ E  L           +V    G  +      ++ K A  L
Sbjct: 340 DEVGGVVYVDDSKATNTHAAEASLAAFE------TVVWIAGGLAKGATFDELVRKSAKGL 393

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-------GNRIEAIRTAIEMLNKQDVL 462
             + ++        D   I   +    P            G  + A+R A  +    D +
Sbjct: 394 RGVVLI------GADRALIAEALARHAPEVPVVDLERTDTGAMLAAVREAARLAEPGDTV 447

Query: 463 VVA 465
           ++A
Sbjct: 448 LLA 450


>gi|56459548|ref|YP_154829.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR]
 gi|81363510|sp|Q5R0M0|MURC_IDILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56178558|gb|AAV81280.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina loihiensis L2TR]
          Length = 490

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 134/431 (31%), Gaps = 67/431 (15%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA  +VVSSA    +           L V   R+   L+      +G      +AV GT 
Sbjct: 82  GASVVVVSSAIKADNAELVAAH---QLRVPVVRRAEMLAELMRFRHG------IAVAGTH 132

Query: 125 GKSSVASFVQQICQRSGL-SSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S V  I   +G   +F IG    ++  ++   +++                   
Sbjct: 133 GKTTTTSLVASIFAEAGRDPTFVIGGLLNSAGSNARLGNSKYLIAEADE----------- 181

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                     S     H    ++ +    TN+  DH+D ++            F   LP 
Sbjct: 182 ----------SDASFLH----LQPMVAIVTNIEADHMDTYEGDFNKLLDTYVEFLHNLPF 227

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  DD    +++ R                     K  A  +     +    K  
Sbjct: 228 YGLAVMCVDDPVVSDLIPRLGRQTMTYGFSEAADVRAIDYKQTASESCFT-ILRKGLKPL 286

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------- 351
           D    LPG+  V NAL A  +    GI+   +   L K   +  RF+  G          
Sbjct: 287 DVCLNLPGKHNVLNALAAVAVATDEGINDEAIKSALNKFEGIGRRFQHYGNFAISDKDSN 346

Query: 352 -NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
                  +  DY H  + +   ++  R     R  +V      R    R +       L+
Sbjct: 347 KEPGEVMLVDDYGHHPSEVAATIQAAREGWPERR-LVMAFQPHRYSRTRDLYEDFVNVLS 405

Query: 411 --DIAIVTDDNPRSEDP------EKIRAEIIH--GIPGFIE--KGNRIEAIRTAIEMLNK 458
             D+ ++ +     E P        +   I     I         +  E + + +     
Sbjct: 406 QVDVLLMLEVYSAGETPVSGADSRSLCRSIRQRGQIDPVYVATVDDMPEVLESVLA---P 462

Query: 459 QDVLVVAGKGH 469
            D+L+  G G+
Sbjct: 463 GDLLLTQGAGN 473


>gi|116670132|ref|YP_831065.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
 gi|189028971|sp|A0JV95|MURC_ARTS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116610241|gb|ABK02965.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
          Length = 467

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 141/422 (33%), Gaps = 58/422 (13%)

Query: 62  QAIAQGAE-AIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
            A   GA  A+V  SA      +  A   +  P+L            A+ + G     ++
Sbjct: 69  SAGNLGAAEAVVAGSAIRADNPELQAARAAGLPVLHRSE------ALAAAMAGD---RVV 119

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            V GT GKS+  S V  + Q +GL        + + S   +    T          S  S
Sbjct: 120 TVAGTHGKSTTTSMVTVLLQGAGLD-PTFAIGANVPSLGVNAASGTSDIFVAEADESDGS 178

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                                          TN+  DH+DY+ T +A        F ELL
Sbjct: 179 FLNYR--------------------PHIAVVTNVEPDHLDYYGTAEAV-YESFDSFTELL 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P +   +  ADD  ++ + +R    G   +     G     +          V +S    
Sbjct: 218 PADGVLVACADDPGARALAERTRTRGNTRVV--TYGTAEDAQLRLHDGGPGDVWVSTGAG 275

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
            F     +PG     NA  A  + + +G+        L        RFEF G    G R+
Sbjct: 276 RFALDLQVPGRHNALNAAAAFAVALELGVAPDAASGALAHFSGASRRFEFKGEGR-GVRV 334

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVT 416
           Y DYAH    +   L   R++     + V        R +       + AL+ AD A+V 
Sbjct: 335 YDDYAHHPTEVRAALAAARSVAGDHKVHVLFQPHLFSRTREFAADFAE-ALNAADTALVL 393

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----------LNKQDVLVVAG 466
           D  P  EDP       I G+   +  G+R+ A    +                D+++ AG
Sbjct: 394 DIYPAREDP-------IPGVSSKL-IGDRLSAGGRLVAAEDAVRAVVANAAAGDIVLTAG 445

Query: 467 KG 468
            G
Sbjct: 446 AG 447


>gi|315304090|ref|ZP_07874491.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria ivanovii
           FSL F6-596]
 gi|313627531|gb|EFR96263.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria ivanovii
           FSL F6-596]
          Length = 461

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 93/282 (32%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            H+S+E SS  L    ++  +      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QHISMELSSFQL--MGVNTFRPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTEDDF 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +          E      
Sbjct: 227 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FDDEVIGARD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 279 RILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +++   G DR      ++       A I          
Sbjct: 339 ATNILATQXALKGFK-----NPVILLAGGLDRGNSFDELLPFFKNVKALIVF-------G 386

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A +     D++++
Sbjct: 387 ETADKIGRVGKIAGIEVYYVDNVEAAVPVAYKESAPGDIILL 428


>gi|238760097|ref|ZP_04621247.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
 gi|238701716|gb|EEP94283.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
          Length = 495

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 131

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 132 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 189 ------------------LQPMVAIVTNIEPDHMDTYQGDFENLKQTFINFLHNLPFYGR 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 231 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLK-RLDKPLMTVT 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRG 355
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 290 LNAPGRHNALNAAAAVAVASEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGS 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 350 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQ-VDVL 408

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         ++LN  D+++V G
Sbjct: 409 LMLDVYAAGEPPIPGADSRSLCRTIRNRGKLDPILVSDSDTVPEVLAQLLNGDDLILVQG 468

Query: 467 KGH 469
            G+
Sbjct: 469 AGN 471


>gi|228935998|ref|ZP_04098808.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823766|gb|EEM69588.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 436

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F+A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|33592810|ref|NP_880454.1| cyanophycin synthetase [Bordetella pertussis Tohama I]
 gi|33572458|emb|CAE42027.1| cyanophycin synthetase [Bordetella pertussis Tohama I]
 gi|332382223|gb|AEE67070.1| cyanophycin synthetase [Bordetella pertussis CS]
          Length = 857

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           ++F      G  + VD  H  ++L  +L  I    + R   V+  G DR+       G++
Sbjct: 710 WQFTLFERNGACVVVDDVHNPSALRALLAAIEQFPARRRAAVYSAGADRNDDALVEQGRL 769

Query: 406 ALDLADIAIVTDD------NPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLN 457
                D  ++ DD       P  +    +R  +          ++ +   AI   ++ L 
Sbjct: 770 LGTTFDQVVLYDDATVASKRPAGQARSLLRQGLEQSARATAIADEADHARAIARVLDDLR 829

Query: 458 KQDVLVV 464
           + D  ++
Sbjct: 830 EGDFALL 836


>gi|146279501|ref|YP_001169659.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557742|gb|ABP72354.1| hypothetical protein Rsph17025_3479 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1279

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 116/355 (32%), Gaps = 38/355 (10%)

Query: 64  IAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           +A+ A+ +V S A         A  R+  P   V    + L+   +          + V 
Sbjct: 61  LARAADCVVASPAIPETHVERRAARRAGIP---VKTRARMLAELIA------DRLTICVA 111

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTI-SSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           G+ GKS+V + +  I   +G   F     ++         RL  P   ++ +A       
Sbjct: 112 GSHGKSTVTAMLIHILSAAGKDDFGYMLGASFADPGIVPARLGAPDAPFVTEACEAH--- 168

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                             L          TNL  DH D++        A    F   LP 
Sbjct: 169 ----------------GALAHWLPSHAILTNLDDDHADHYGGPSGLRRA-FSAFLSRLPP 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           E  A+   DD    ++++ A  A                 +     +          +  
Sbjct: 212 EGRAVACGDDLDVVDILREARCAALTYGFRDEN-----ALRAVQAGDGSATVFLHGTELG 266

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG   + NAL A G+ + +GI        L   H +  R   +GT S+   I+ 
Sbjct: 267 ALSLAVPGRHNLLNALAALGMALTLGIGFRTATGALADFHGIARRLSRIGTGSQPR-IFD 325

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
           D+AH    +   +  +R  T GR+I +          +  +    AL  AD + +
Sbjct: 326 DFAHHPTEIAASIAVLRETTQGRLIAILEPQLHSRVSRMALRFAQALGAADRSYI 380


>gi|253681282|ref|ZP_04862080.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
 gi|253562520|gb|EES91971.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 70/437 (16%), Positives = 143/437 (32%), Gaps = 58/437 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH      I    + +V ++A    +    +R++   +   +  +FL            +
Sbjct: 61  GHN--KDNIKN-VDLVVYTAAIPDSN-PELVRAHELQIPTMDRAEFLGHVMQGH-----K 111

Query: 116 NILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +A++GT GK++  S +  I    +   +  +G    + +       +        +  
Sbjct: 112 YNIAISGTHGKTTTTSMLSHITLSANLDPTILVGGNLDVINGNVRVGNSDYFVTEACEYK 171

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +                               G   N+  DH+D+++      N     F
Sbjct: 172 ASFLKFY----------------------PYIGIILNIEADHLDFYKDINDIQNT-FLKF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +L+PK+   I+ ADD    ++ K      C +++ G     +  K +   + +    + 
Sbjct: 209 AKLIPKDGFLIVNADDERCLDISKEV---DCNIITFGINNGEVRAKNIEFNNGRPTFDVY 265

Query: 295 VEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K F     +PG   + +AL +    +++ +D+  ++E L   +    RFE  G   
Sbjct: 266 RNNTKLFSLTLNVPGNHNILDALASISASLSLKVDTNSIIEGLSTFYGAHRRFEIKG-KL 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--AD 411
            G  +  DYAH    ++  L   +     +I  +F       +    +    A     AD
Sbjct: 325 NGITVVDDYAHHPTEIKAALNAAKNFPHNKIFCIF-QPHTYSRTI-SLFEDFADSFFNAD 382

Query: 412 IAIVTDDNPRSEDPEKI---------RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             ++ D     E    I           E            +     +   + L + D+L
Sbjct: 383 TLVLADIYAAREKDTGIVNSDILGDKIREKGVNCKNLHSFEDIT---KFLRQELKEGDLL 439

Query: 463 VVAGKGHETVHIVTNGE 479
           +  G G     I   GE
Sbjct: 440 ITVGAGD----IYKVGE 452


>gi|227497588|ref|ZP_03927811.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
 gi|226832957|gb|EEH65340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
          Length = 506

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 107/387 (27%), Gaps = 74/387 (19%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 + VTGT GK++    +  I   +GL +  +G     +             + L 
Sbjct: 126 HPEVPWITVTGTDGKTTTVGMLSAILTAAGLEAPAVGNIGVPTISVVAAGGAQALAVEL- 184

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                             SS  L  H    +  +A +  NL  DH+D+H   +AY     
Sbjct: 185 ------------------SSFQL--HTTHSLSPLAAACLNLSADHLDWHGGMEAY---AA 221

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAH------------------NAGCRVLSVGYQ 273
                    +  A+    D  +  ++++A                     G     +  +
Sbjct: 222 DKSRVYTHAQRAAVYNLADPATLRMVEQADVVEGCRAIGFGLGAPGLGQVGLVEDVMVDR 281

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                     A          +         P         A   A     +  D   V 
Sbjct: 282 AWHPRRHHEAAELATLADLAHLAPGGEVDRLPAHIAADALAAASLALAHPQVQADLGAVA 341

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
             L        R   V   +    +    A  ++S +  L ++R  +      V+  GGD
Sbjct: 342 RGLRAFTPGAHRLVTVAEGAGVTWVDDSKATNAHSTQAALSSVRPGS-----AVWIVGGD 396

Query: 394 -RDQGKRPIMGKIALDLADIAIV--------------TDDNPRSEDPEKIRAEIIHGIPG 438
            +      ++ ++   L    ++                D PR   P     E+I     
Sbjct: 397 TKGADLHELVARVRPYLRGAVVIGADPTPVLQALEDEAPDLPRRVVPAASAREVI----- 451

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                   EA+R A  M  + D +++A
Sbjct: 452 -------EEAVRQASAMAQEGDTVLLA 471


>gi|153809194|ref|ZP_01961862.1| hypothetical protein BACCAC_03505 [Bacteroides caccae ATCC 43185]
 gi|149128170|gb|EDM19390.1| hypothetical protein BACCAC_03505 [Bacteroides caccae ATCC 43185]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 109/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQSHVECTAF-LGGISKNYGTNLLLSQKSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T    DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMSV-------------------ITATDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYNYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G+    + + +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKKGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           N R      DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 324 NDR-VVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I GI   +   N    I     M  K+D+L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGITSKLIYDNLRPGIEK--SMCKKEDIL 425


>gi|118444708|ref|YP_877107.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium novyi NT]
 gi|166222976|sp|A0PXK5|MURC_CLONN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118135164|gb|ABK62208.1| UDP-N-acetylmuramate--alanine ligase [Clostridium novyi NT]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 95/274 (34%), Gaps = 14/274 (5%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+D+++      N     F +L+P +   I+ ADD    EV K+   
Sbjct: 178 YPYIGVILNIEADHLDFYKDINDIQNT-FLKFAKLIPNDGFLIVNADDKRCVEVSKQV-- 234

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGL 321
             C V++ G     +  K +   + +    +    +  F     +PG   + +AL +   
Sbjct: 235 -DCNVITFGINNGDVRAKNIVFNNGRPTFDVYRNEEKLFTLTLNVPGNHNILDALASISS 293

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +++ +    ++E L   +    RFE  G    G  +  DYAH    ++  L   +    
Sbjct: 294 ALSLNVPVDSIIEGLSTFNGAHRRFEIKG-KVDGITVVDDYAHHPTEIKAALNAAKNFPH 352

Query: 382 GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIH 434
            R+  VF      R           +   AD  ++ D     E          +  +I  
Sbjct: 353 KRVFCVFQPHTYSRTISLFDDFAN-SFSNADTLVLADIYAAREKDTGVVSSTMLGDKIRE 411

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                    +  + +      L   D+L+  G G
Sbjct: 412 NGVNCKNLHSFEDIVTFLKGELKDGDLLITIGAG 445


>gi|116629840|ref|YP_815012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           gasseri ATCC 33323]
 gi|238853968|ref|ZP_04644325.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311110519|ref|ZP_07711916.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
 gi|122273222|sp|Q042P8|MURD_LACGA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116095422|gb|ABJ60574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           gasseri ATCC 33323]
 gi|238833413|gb|EEQ25693.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311065673|gb|EFQ46013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/389 (12%), Positives = 108/389 (27%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        ++ N P++            A  +        + VTG++GK++     Q+
Sbjct: 84  PYENPMVEKALKLNIPVITEP-------EIALNVSEAP---YVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I                 +    +  +     +  A     L  +  +   +  +     
Sbjct: 134 IMDHHLSK------NGGHAYAVGNIGVPISEVVEKATDKDLLVVEMSSFQLLGVTDIK-- 185

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  I   + N+  D+                   +       A     +   +E
Sbjct: 186 ----PKVAAIVDIYNNVHLDYHKTFDNYVEAK--LRITQSQDQNDYFIANFDQKNILDRE 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K          +      FI  + + +  + Q + IS           +PG     N 
Sbjct: 240 LKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIMKISD--------IKIPGIHNQQNC 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G D + +   L        R ++V T +         +    +  + + +
Sbjct: 292 LVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPS 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IH 434
            +        V+   G DR      ++  +        ++       E    +       
Sbjct: 352 FKEPE-----VLIAGGLDRGFMFDSLVP-LFKKYVKSIVL-----YGETKYLLADAARKA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A E+    DV++
Sbjct: 401 GIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|266624667|ref|ZP_06117602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
 gi|288863458|gb|EFC95756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
          Length = 301

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 61/203 (30%), Gaps = 17/203 (8%)

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                   V   +     T     +       + G   V NA+V+  +    GI      
Sbjct: 92  NCHYRAVDVRLENGYPVFTAVCGDEQVPVRLKVMGTHNVANAMVSLAVASVCGIPMEAAA 151

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITS-GRIIVVFGCG 391
           + L +      R +   T   G  I  D Y  +  S++  L+ + +I    R + V    
Sbjct: 152 KQLAEFTGFQNRQQIYHTG--GMTIIDDTYNASPVSMKAGLEVLNSIEHSRRRVAVLADM 209

Query: 392 ---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNR 445
              G         +G  IA    D   V       E  ++I   +    P     E  +R
Sbjct: 210 KELGPDSPRYHYEIGTYIAAHPVDKVAV-----LGEPAKEIARGVREQAPHILVYEFMDR 264

Query: 446 IEAIRTAIEMLNKQDVLVVAGKG 468
              +      L + D ++   KG
Sbjct: 265 EPLVEWLKTELREGDAVLF--KG 285


>gi|117618995|ref|YP_858322.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|171460770|sp|A0KPX1|MURC_AERHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117560402|gb|ABK37350.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 484

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 142/419 (33%), Gaps = 52/419 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A    +          I VV   R+   L+      +G      +A+ GT G
Sbjct: 79  ASVVVVSTAIKQDNPELLAARELRIPVV---RRAEMLAELMRFRHG------IAIAGTHG 129

Query: 126 KSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S V  I  +     +F IG    ++S   + RL +   +    A +  S     H
Sbjct: 130 KTTTTSLVASIYAEADRDPTFVIG--GLLNSAGTNARLGSSRYL---IAEADESDASFLH 184

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +    S                   TN+  DH+D +    +   A    F   LP    A
Sbjct: 185 LQPMVS-----------------IVTNIEADHMDTYGGDFSKLKATFIDFLHNLPFYGLA 227

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD   + ++            +        L  V   +  +      +  + +   
Sbjct: 228 VVCVDDPVIRGMLPEIARPTI-TYGLSDDADVQVLDFVQTSNRSRFRVRRKDAGELEVTL 286

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVD 361
            LPG     NA  A  +    GI    ++  L K   V  RF+  G    G     +  D
Sbjct: 287 NLPGIHNALNAAAAIAVATEDGIGDDAIIRALAKFEGVGRRFQQYGEFETGRGKAMLVDD 346

Query: 362 YAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDN 419
           Y H  + +++ +   R      R+++VF      R +        +     D+ ++ +  
Sbjct: 347 YGHHPSEVKVTINAARAGWPEKRLVMVFQPHRYTRTRDLYEDFADVLSK-VDVLVMLEVY 405

Query: 420 PRSEDP------EKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              E+P        +   I       P F+   + + A+   +  + + D+++  G G+
Sbjct: 406 AAGEEPIPGADGRALCRSIRSRGSLEPIFVATPDDVPAVLAGL--VGEGDLVLTQGAGN 462


>gi|90961461|ref|YP_535377.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           UCC118]
 gi|227890551|ref|ZP_04008356.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ATCC 11741]
 gi|301299769|ref|ZP_07206012.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|122449234|sp|Q1WUP1|MURC_LACS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|90820655|gb|ABD99294.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus salivarius
           UCC118]
 gi|227867489|gb|EEJ74910.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ATCC 11741]
 gi|300214313|gb|ADJ78729.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Lactobacillus salivarius CECT 5713]
 gi|300852624|gb|EFK80265.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 443

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 62/220 (28%), Gaps = 13/220 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY        +A   L  +            +       +++ 
Sbjct: 163 AYHPDYAIMTNIDFDHPDYFTDIDDVRDAFETLAMQTKKGIFVWGEDEN-------LRKL 215

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAA 319
           +                  + +          +    +   ++  P+ GE  V N+L   
Sbjct: 216 NAKVPVHYYGTKSDDDFRAENIKRTTKGSNFDVYFHDEFIGNYDIPMFGEHNVLNSLAVI 275

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            +     +D   + + L     V  RF           I  DYAH    ++  +   R  
Sbjct: 276 AVSYMEKVDQQEIAKELLTFKGVKRRFTEKRVA--DMVIIDDYAHHPAEIKATIDAARQQ 333

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD 417
              + I+         +    +M + A    LAD   +TD
Sbjct: 334 YPDKKIIAVFQPHTFSRTI-ALMDEFAESLSLADKVYLTD 372


>gi|324112499|gb|EGC06476.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia
           fergusonii B253]
          Length = 438

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALILLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGINMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAH------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|313617977|gb|EFR90137.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria innocua
           FSL S4-378]
          Length = 461

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 90/282 (31%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QYISMELSSFQL--MGVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTADDF 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +     +  +++    +          E      
Sbjct: 227 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLEQGSYVQNGNIM-------FDDEVIGSRD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 279 SILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRTQFVVEWQGRKFYNDSK 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++       + I          
Sbjct: 339 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------G 386

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               +   A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILL 428


>gi|217963819|ref|YP_002349497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes HCC23]
 gi|217333089|gb|ACK38883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes HCC23]
 gi|307571610|emb|CAR84789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes L99]
          Length = 455

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGARD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       N   A+  A    +  D++++
Sbjct: 381 ETADKIGRVGKIAGID-VHYVDNVEAAVPVAYRESSPGDIILL 422


>gi|16273062|ref|NP_439294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae Rd KW20]
 gi|260580220|ref|ZP_05848050.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
 gi|1171072|sp|P45063|MURD_HAEIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus
           influenzae Rd KW20]
 gi|260093504|gb|EEW77437.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
          Length = 437

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/395 (15%), Positives = 121/395 (30%), Gaps = 55/395 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R     +   +   +  ++
Sbjct: 161 SFQLET--TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLR-----IYHNAKVGVLNNE 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                             +      ++  +        +   I            L G  
Sbjct: 214 DRLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMVKDEVILP-----CEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+ V   +    I    A    S  
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLVHQANGIRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R         
Sbjct: 329 AALAGL--YIEGKLHLLLGGDG-----KGADFSELAELINQPHIICYCFGRD-------G 374

Query: 431 EIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
            ++          +   +AI      L   D++++
Sbjct: 375 ALLAKFSSQSYLFDTMEQAIEFLRPTLQSGDMVLL 409


>gi|103487367|ref|YP_616928.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
 gi|118595694|sp|Q1GRX7|MURD_SPHAL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|98977444|gb|ABF53595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
          Length = 434

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 124/401 (30%), Gaps = 63/401 (15%)

Query: 67  GAEAIVVSSAYSLQ-DFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           G   +VVS    L     A    +  + V+ +      LFA       P  ++ +TGT+G
Sbjct: 65  GFAGVVVSPGVPLNRHPIAAHARDAHVPVIGDIE----LFAEARSELPPHKVVGITGTNG 120

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KS+V + +  + + +G+     G             + T  P+                 
Sbjct: 121 KSTVTALIAHMLESAGVPVLMGGNIGL--------PILTREPL-----------PEAGVY 161

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  +D      +       TN+  DH+D +   + Y  A       L  ++  AI
Sbjct: 162 VLELSSFQIDL--AHSLACDVAVLTNISPDHLDRYDGFEGYV-ASKARLFSLQHRDQVAI 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           I  DD  SK +  R ++   RV +                 +  Q  +            
Sbjct: 219 IATDDDPSKMIASRVNHRLHRVSAKDIDPVDQARWPALQGPHNAQNAV------------ 266

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
                       A   C  +G+D   +   L     +P R E VG            A  
Sbjct: 267 -----------CAIAACRVLGLDDEAIERGLATFRSLPHRMELVGEARGARWYNDSKATN 315

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCG--GDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           + S    L         R+  + G    GD     RP  G +    A +          E
Sbjct: 316 AASAAPALAAFPPAPDQRLHWIAGGQAKGDGLAACRPWFGHV--KRAYLI--------GE 365

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 AEI   I      G+   A+  A   +   D++++
Sbjct: 366 AMAPFAAEIGDAIA-IERSGDLASAVAQAAAAVQPGDIVLL 405


>gi|315634759|ref|ZP_07890042.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Aggregatibacter segnis
           ATCC 33393]
 gi|315476517|gb|EFU67266.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Aggregatibacter segnis
           ATCC 33393]
          Length = 457

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+G DH D     +A    +       +P     + +A++   ++ +   
Sbjct: 178 HYNPRTLIINNIGFDHADIFDDLKAIQR-QFHHMIRTIPNNGRILSFANEESVQQTLSMG 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             + C+ +    +     +         +        K  +  + + GE  + N L+A  
Sbjct: 237 CWSECQYVGHDQEWYAERI----KHDCTEFAVFHNGEKVAEVHWNIVGEHNMRNGLMAIA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
                G+        L        R E  G N +G  +Y D+AH    ++  L  +R   
Sbjct: 293 AAHHAGVSIENACAALGVFINAKRRLEVKG-NVQGVTVYDDFAHHPTEIQATLTALRDKV 351

Query: 380 -TSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
             + RI+ V     +  + G        AL+ AD   +   +       +I A +     
Sbjct: 352 GQNERILAVLEPRSNTMKMGVHKEEIAPALEKADAVFLFQPDTIPWKVAEIAAHLTQPAY 411

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +    +          D ++V
Sbjct: 412 DSDNLDDF---VHLIAAEAKPTDHILV 435


>gi|254506890|ref|ZP_05119029.1| folylpolyglutamate synthase [Vibrio parahaemolyticus 16]
 gi|219550175|gb|EED27161.1| folylpolyglutamate synthase [Vibrio parahaemolyticus 16]
          Length = 421

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/371 (14%), Positives = 115/371 (30%), Gaps = 28/371 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +             
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRINGQDLSDEKH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAG-----------SFTNLGRDHIDY 219
                   Q    +S+    +G L   RL   + +               TN+    +  
Sbjct: 106 TEAFDFVEQQRGDISLSFFEYGTLAALRLFQTEKVDVVLLEVGLGGRLDATNVVAHDVSV 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             +        +     ++  E   I  +         K           +G +   + +
Sbjct: 166 ITSLALDHIDWLGDDINVIGFEKAGIYRSGKPAICGQPKAPSTVAAHADDIGAELYQVGI 225

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +      ++ + T +    D +   P+P       A     L  A    + + + +    
Sbjct: 226 QYRYEQTSETEWTWTHGSYDLE-ALPIPSLPLQNAATALMALATANLDITDVNIVNGLTN 284

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGK 398
             +PGR +     +    + +D AH  +S E ++  +      + I  V     D+D   
Sbjct: 285 AQLPGRMQI---INHSPTVLLDVAHNPHSAEYLVGRVHQQYPSKTIHAVVAMLHDKDI-- 339

Query: 399 RPIMGKIALDLADIAI---VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                +    +A       +T   PR+   +++   +  G    ++  + + A   A+  
Sbjct: 340 -KATLEALAPIATHWYPASLT--GPRAATADELCQHLPAGN---VQFESPVAAFDAAMTH 393

Query: 456 LNKQDVLVVAG 466
              +DV++V G
Sbjct: 394 AAPEDVILVVG 404


>gi|37527520|ref|NP_930864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|60390525|sp|Q7N145|MURD_PHOLL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|36786955|emb|CAE16029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 436

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 116/400 (29%), Gaps = 60/400 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L        +N  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVVSPGIALATAVLQAAANAGIEIVGDIE--------LFCREATAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S V ++ + +       G                   + L         +      +
Sbjct: 118 TVTSLVGEMAKAANWQVGVGGNIGLP-------------ALEL-------LKKSCQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH+D +    + + A          +       
Sbjct: 158 ELSSFQLET--TYSLNATAAAVLNVTEDHMDRYPQGVSQYRAAKLRIYHQAKRCIVNAQD 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                   +  R  + G          +   L             +  +         L 
Sbjct: 216 PLTLPEMGMDSRCVSFGVDCGDYQLDSENAFL------------KVHNQSLLATNEIKLT 263

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N LVA  L  A+GI     L  L     +  RF+    N     I    A    
Sbjct: 264 GRHNYANGLVALALADAVGIPREASLATLTVYPGLDHRFQLARLNKGVRWINDSKATNVG 323

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S    L  +     G + ++ G  G   D    K  + G              D    + 
Sbjct: 324 STMAALDGLNL--EGTLYLLLGGDGKSADFSPLKPFLCGNKVQLYC----FGRD---GKQ 374

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R EI              +AIR     L   D++++
Sbjct: 375 LAQLRPEI------ATLTETMEQAIRDIAPRLVAGDMVLL 408


>gi|21672497|ref|NP_660564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25090714|sp|Q8K9T2|MURD_BUCAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21623116|gb|AAM67775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 440

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 113/358 (31%), Gaps = 47/358 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+++TGT+GKS+VA+ V++I ++SG      G          + + +     
Sbjct: 100 FSRETKCPIISITGTNGKSTVATMVKKIAEKSGYKVLLGGNIGFPVLEMLNKKASL---- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L+      +K       N+  DH+D +      + 
Sbjct: 156 ----------------YVLELSSFQLET--TFNLKSKIAVVLNITEDHLDRYPEGFEQYK 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                           +   +        K+  + G             +       + K
Sbjct: 198 KTKLSIYNKAKICLIKLKKGEKKPFNTKSKKYISFGT-----------CNNNDYYINYEK 246

Query: 289 QQVTISVEGKDFDFLFPLP--GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           ++  +  + K       +   G     N L +  +   +  D  + +  L+K   +P RF
Sbjct: 247 EKAILFHKNKKIVDTSNILLNGHHNYENILTSLAISDQMKFDQKVSINVLKKFLGLPHRF 306

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           + V  N+    I    +   +S +  LKN++     +  +    GGD       I+ K  
Sbjct: 307 QTVHINNNISWINDSKSTNVDSTKAALKNLK----IKGTIWLLLGGDGKSSNFNILKKYF 362

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +         +    +  K+           I      +AI    + +   DV+++
Sbjct: 363 EKIKIKIYCFGKD--GLNLSKLCK------KKSIYTKTLKQAIILISKKIQPGDVVLL 412


>gi|269103565|ref|ZP_06156262.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163463|gb|EEZ41959.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 451

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 104/356 (29%), Gaps = 28/356 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ AS +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVMAVSGTHGKTTTASMLAWILEDCGYNPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     ++      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLKSIQ---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P        +    +      GC        G      +       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRILAPHGVAAIDETLEMGCWSELEYIGGDGHWQAEKLMADGSQFS 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    K     +PL G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VLLDGEKVGVVNWPLVGDHNVNNALMAIAAARHVGVTPDLACEALGNFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQ-GKRPIMGKIALD 408
              G ++Y D+AH   ++E+ L  +R       RI+ V     +  + G        +L 
Sbjct: 320 EVNGVKVYDDFAHHPTAIELTLGGLRAKVGADARILAVLEPRSNTMKLGVHKDDLAPSLQ 379

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +   N        I  +            +    +        + D ++V
Sbjct: 380 AADEVFLFQPNNIPWSVSDIANQCSQ---PAFTNDDLDGLVAEICAHAKEGDTILV 432


>gi|269137740|ref|YP_003294440.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda EIB202]
 gi|267983400|gb|ACY83229.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda EIB202]
 gi|304557798|gb|ADM40462.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda FL6-60]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 112/359 (31%), Gaps = 38/359 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             ++AV GT GK++ A  V  I +  G    F IG      S +     +    I   + 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVNWILESCGYEPGFVIGGVPGNFSVSARLGKSPFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +    V                         NL  DH D     +A    +   
Sbjct: 163 DCAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDLRAIQR-QFHH 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              L+P +   I+ A DA  K+VM     +   +             ++    ++  V++
Sbjct: 207 LVRLVPGQGRIILPAGDANLKQVMAMGCWSEQELCGD---EAAWSATRLSTDASRFSVSL 263

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             E    +  + L GE  ++N L+A      +G+  A     L        R E  G   
Sbjct: 264 DGEC-VGEVEWALVGEHNMHNGLMAIAAARHVGVPPAEACRALGSFINARRRLELRGQA- 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------KI 405
            G  +Y D+AH   ++   L  +R    G  RI+ V        +     MG        
Sbjct: 322 YGVSVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP-----RSNTMKMGVCKNELAP 376

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AL  AD   +         P ++       +       +    +   ++     D ++V
Sbjct: 377 ALGRADEVFLYQPQH---IPWQVAEVAEACVQPAHWSADLGTLVEMIVKNAQPGDHILV 432


>gi|225375617|ref|ZP_03752838.1| hypothetical protein ROSEINA2194_01242 [Roseburia inulinivorans DSM
           16841]
 gi|225212596|gb|EEG94950.1| hypothetical protein ROSEINA2194_01242 [Roseburia inulinivorans DSM
           16841]
          Length = 467

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+            +  N+  DH++ H T + Y   K  + +     ++  + Y
Sbjct: 178 EISSFQLET--THEYAPEVTAILNITPDHLNRHHTMECYIETKESITKNQTAGDTCVLNY 235

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D   +   +          S     K ++L      +        V          + 
Sbjct: 236 -EDEVLRRFGETLQTKVVFFSSKRKLEKGLYLDGEDIFYADGTTDTKV---INVNELNIL 291

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N + A G+ ++ G+    ++E L++   V  R E+V                 +
Sbjct: 292 GKHNYENVMAAVGMSVSFGVPMDKIVEVLKRFQAVEHRIEYVTEKRGVKFYNDSKGTNPD 351

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R  ++ G G D+       +      +  + ++       +  EK
Sbjct: 352 AAIQGIRA-----MNRPTLLIGGGYDKQSEYDEWIESFDGKVKKLVLI------GQTKEK 400

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    I      EAI T        D +++
Sbjct: 401 IAECAKKHGFEDVILCDTFEEAIDTCYANAVSGDAVLL 438


>gi|293610569|ref|ZP_06692869.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826913|gb|EFF85278.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 482

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 123/379 (32%), Gaps = 46/379 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH   P+ I   A  +VVS+A   ++          I +V   R+   L       +G  
Sbjct: 73  GHQ--PENIKN-ANVLVVSTAIDPENPEIKAAIEQRIPIV---RRAEMLGELMRYRHG-- 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S +  +        ++ IG                     +  
Sbjct: 125 ----IAVAGTHGKTTTTSLLTTMLAEENLDPTYVIGGLLN--------------STGVNA 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           AL             +AS           ++ +A   TN+  DH+D ++           
Sbjct: 167 ALGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFV 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DDA  +E++ R                      +     +   T
Sbjct: 219 QFLHNLPFYGLAVVCGDDANIREILPRVGRPVITYGFNEDNDI--RAVDIEQDGMQSHFT 276

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G++        PG   V NAL A G+    G+    +   LE    V  RF+  G 
Sbjct: 277 VLRKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDDAISRALEGFSGVGRRFQVQGE 336

Query: 352 N---SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
                   ++  DY H    +E  +K  R     R +V+        + +       ++ 
Sbjct: 337 FELADGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVL 396

Query: 407 LDLADIAIVTDDNPRSEDP 425
               D  ++ +  P  E P
Sbjct: 397 SQ-VDQLLLLEVYPAGEKP 414


>gi|154488879|ref|ZP_02029728.1| hypothetical protein BIFADO_02187 [Bifidobacterium adolescentis
           L2-32]
 gi|154083016|gb|EDN82061.1| hypothetical protein BIFADO_02187 [Bifidobacterium adolescentis
           L2-32]
          Length = 532

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 114/406 (28%), Gaps = 56/406 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + +    ++ +TGT+GK S A   + IC+  G+ +             +           
Sbjct: 34  HPEQSFRVIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEHVNERIAIDGQQLSDD 93

Query: 170 LAKALSYLSSQGVTHVSVEASSHG------------------------------LDQHRL 199
                       V  V ++    G                                  R 
Sbjct: 94  DFVDTWDQVKDLVAIVDMKMDELGKPKMSFFEVLTAMAIWKFADAPVDVAIVEVGMGGRW 153

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D   ++      +G   +D+                 ++     AII       + +   
Sbjct: 154 DATNVLDADAAIIGPVDMDHMAWLGDTVEEIATEKVGIIKPNCTAIIGRQPHEDEVMPII 213

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              A     S+   G    +         Q  T+      +  +          +  +AA
Sbjct: 214 EAAAKENHASLVRDGVESEVVTRVPAVGGQVATLRTPNGTYTEVPIAKFGEHQAHNALAA 273

Query: 320 GLCIAIGIDSA-----LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
                + I         ++        +PGR E + T+     I +D  H  N+ E +  
Sbjct: 274 LCAAEVVIPVNGALDGDLVAEALSSVRIPGRIEQIRTSPT---IILDGGHNVNAAESLRA 330

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-----EDPEKI 428
            I       +++ V    GD+          +   L    IVT+++ R      ED +KI
Sbjct: 331 AIEENYDFQQLVGVVAMMGDKQVE---EYLGVLEPLLSHVIVTENSWRDRVMPAEDLKKI 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
              +  G           +AI+ A+ M++  D         ++V G
Sbjct: 388 ADRVF-GPERVTCIPELPDAIQEAVNMVDADDELGVGYGHGVLVCG 432


>gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.4-21]
          Length = 437

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 119/394 (30%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTLEIQTALKAGVEVIGDIE--------LFCRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R     +   +   +  ++
Sbjct: 161 SFQLET--TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLR-----IYHNAKVGVLNNE 213

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                             +      ++  +        +   I            L G  
Sbjct: 214 DRLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMVKDEVILP-----CEEATLVGRH 268

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  AIGI+   +   L     +  RF+     +    I    A    S  
Sbjct: 269 NYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLAHQANGIRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R        A
Sbjct: 329 AALAGL--YIEGKLHLLLGGDG-----KGADFSELAELINQPHIICYCFGRD------GA 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +AI      L   D++++
Sbjct: 376 LLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|257865983|ref|ZP_05645636.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC30]
 gi|257872316|ref|ZP_05651969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC10]
 gi|257875610|ref|ZP_05655263.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC20]
 gi|257799917|gb|EEV28969.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC30]
 gi|257806480|gb|EEV35302.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC10]
 gi|257809776|gb|EEV38596.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus casseliflavus
           EC20]
          Length = 444

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 85/307 (27%), Gaps = 38/307 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   +AVTG+ GK+S    +  +      +SF IG                P   + + 
Sbjct: 103 QPYTSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIG---------DGTGHGEPDAEFFSF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                    + +                         TN+  DH DY  + +  F+A   
Sbjct: 154 EACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYFHSIEDVFSAFQS 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +  ++                + + K   +       V                  +   
Sbjct: 196 MASQVKKGIFAFG------DDEYLRKLEADVPIYYYGVNDNDDVQAKNIERTTQGSEFDV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                    F+ P  G+  + NAL    +    G+D   V   +     V  RF      
Sbjct: 250 FIHGENIGHFVLPAFGQHNINNALSVIAVAYKEGLDMKEVAAEMISFPGVKRRF--SEKI 307

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                I  DYAH    ++  +   R       II VF      R         + ALDLA
Sbjct: 308 VADMTIVDDYAHHPAEIKATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 366

Query: 411 DIAIVTD 417
           D   + D
Sbjct: 367 DHVYLCD 373


>gi|217967148|ref|YP_002352654.1| FolC bifunctional protein [Dictyoglomus turgidum DSM 6724]
 gi|217336247|gb|ACK42040.1| FolC bifunctional protein [Dictyoglomus turgidum DSM 6724]
          Length = 443

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 115/390 (29%), Gaps = 34/390 (8%)

Query: 108 RLYGKHPENILAV--TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA----QDNR 161
           +L G   +N+ A    GT GK S ++ +  I + +G            S           
Sbjct: 40  KLMGNPQDNLQAFHVAGTKGKGSTSAMIFSILKEAGYKVGLYTSPHLQSIRERISTHKGF 99

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHG---------------LDQ--------HR 198
           ++    I L         +   H      +                 LD          R
Sbjct: 100 ISQEEFIDLIDYAKPYIEEAKKHPIFGPPTFFEVLTALAFLYFYIKKLDYVVIEVGLGGR 159

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD   +I    + +     D+                 ++ +    I       +++V+ 
Sbjct: 160 LDATNVINPLVSIITPIGFDHMHILGNTIEKIAFEKAGIIKEGKFVISSIQKEEAEKVIA 219

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +       +            K         +  +S +  + +F  PL GE Q+ NA+ A
Sbjct: 220 KVAKERNAIYYKIDNLFKWERKDFSLNGQ--RFLLSGKDINEEFFIPLLGEHQIVNAITA 277

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G    +    ++  E + +              S+     +D AH   S   +   ++ 
Sbjct: 278 FGAIYLLRDKLSIDYETVREGFKKVQWMGRFQIVSKSPLTIIDGAHNVESAIALRDTLKN 337

Query: 379 I-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-EDPEKIRAEIIHGI 436
                R+ ++ G   D+D      +    +   +   ++    RS E+   I        
Sbjct: 338 YVNFNRLFLICGLMKDKDAEGFLKILNPLVYSYNFVPLSSHRTRSPEELGNIVKSFNADA 397

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  N  EAI    +  + +D++++ G
Sbjct: 398 -NINLHTNFYEAINFVKKEASPEDLILITG 426


>gi|126643342|ref|YP_001086326.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ATCC 17978]
          Length = 448

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 121/379 (31%), Gaps = 46/379 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + I   A  +VVS+A   ++          I +V   R+   L       +G  
Sbjct: 39  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRIPIV---RRAEMLGELMRYRHG-- 90

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S +  +        ++ IG                     +  
Sbjct: 91  ----IAVAGTHGKTTTTSLLTTMLAEENLDPTYVIGGLLN--------------STGVNA 132

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           AL             +AS           ++ +A   TN+  DH+D ++           
Sbjct: 133 ALGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFV 184

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DDA  +E++ R                      V     +   T
Sbjct: 185 QFLHNLPFYGLAVVCGDDANIREILPRVGRPVITYGFNEDNDI--RAIDVEQDGMRSHFT 242

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G 
Sbjct: 243 VLRKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGE 302

Query: 352 NSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
              G        DY H    +E  +K  R     R +V+        + +       ++ 
Sbjct: 303 FELGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVL 362

Query: 407 LDLADIAIVTDDNPRSEDP 425
               D  ++ +  P  E P
Sbjct: 363 SQ-VDQLLLLEVYPAGEKP 380


>gi|153005370|ref|YP_001379695.1| FolC bifunctional protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028943|gb|ABS26711.1| FolC bifunctional protein [Anaeromyxobacter sp. Fw109-5]
          Length = 403

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 9/126 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRP 400
            PGR E V        + +D AH  +    +   +R +  GR + +VFG   D+D  +  
Sbjct: 271 WPGRLEEVAG------VLLDGAHNPDGAAALAAALRAMYPGRPVELVFGVLADKDHARML 324

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
                A       +VT  + R+   +++ A             +  +AI  A        
Sbjct: 325 AALVRAARALH--VVTPASTRARPADEVAATARGLGAPADVHDSVADAIACARRAALPGG 382

Query: 461 VLVVAG 466
           V+ VAG
Sbjct: 383 VVCVAG 388


>gi|16801208|ref|NP_471476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           innocua Clip11262]
 gi|30316097|sp|Q929Y1|MURD_LISIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16414656|emb|CAC97372.1| murD [Listeria innocua Clip11262]
          Length = 455

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 90/282 (31%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTADDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +     +  +++    +          E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLEQGSYVQNGNIM-------FDDEVIGSRD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 SILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++       + I          
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKSLIVF-------G 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               +   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILL 422


>gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
 gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
          Length = 438

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 130/404 (32%), Gaps = 66/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L     +      I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPILSEAVEAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L ++ + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGLP-------------ALSLLQSPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--THSLKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYENAQICIVNADD 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A     +   KR  + G          +   +           + +  E         + 
Sbjct: 216 ALTMPVRGADKRCVSFGVDFGDYHLNKQQGSIW----------LRVKGEKVLNTAEMKMA 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L  L + + +  RF+ V  +     I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLAALTQFNGLAHRFQLVHEHQGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR------ 421
           S E  L  ++    G + ++ G  G +     P++            +  DN R      
Sbjct: 326 STEAALNGLQ--VQGTLWLLMGGDG-KSADFTPLIP----------WLQGDNVRLYCFGR 372

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +R +I       +      +A+      +   D++++
Sbjct: 373 DGDALAALRPDI------AVRTETMRQAMEQIAPQVKAGDMVLL 410


>gi|302672146|ref|YP_003832106.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
 gi|302396619|gb|ADL35524.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
          Length = 539

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 113/357 (31%), Gaps = 22/357 (6%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE-NILAVTGTSGK 126
           A  IV +    L  F   + +     + +   ++    A R+  +HP   I+ +TG+ GK
Sbjct: 138 AVLIVWAVYIGLFPFLTALANLINKPIENRINRYFIDDAKRILREHPGLRIIGITGSFGK 197

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +SV  ++  +                           TP  I        + +  +    
Sbjct: 198 TSVKYYLTTLLSEGYRVLMT------------PESYNTPMGIVRTIREHLMPTHEIFVCE 245

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR----LFEELLPKES 242
           + A      +   D +    G  T++G  H++   +     + K      + E++     
Sbjct: 246 MGARHLHDIKEITDIVHPDDGILTSIGHQHLETFHSLDNIISTKYELLDAVDEKMKADGK 305

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD- 301
                       E+++        +     +G       +    +    T++    +   
Sbjct: 306 KDAHLKFVNGDNEIIRANMKYEDAITYGLSEGCDYRATDIKVSGSGTSFTVTAPNGETCE 365

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   L G   V N + A     ++GI    +   + +L  VP R E +        +   
Sbjct: 366 FATKLVGRHNVENIVGAIAAANSLGIPMTKLRIAVRRLASVPHRLELIKHGPV-SILDDA 424

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMGKIALDLADIAIV 415
           Y    N  ++ L+ +        I+V       G+++       GK A  + D  I+
Sbjct: 425 YNSNPNGAKVALETLDLFEDQVKILVTPGMVELGEKEDEYNKEFGKQAAAVCDYIIL 481


>gi|229829365|ref|ZP_04455434.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
 gi|229792528|gb|EEP28642.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
          Length = 451

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 16/278 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   ++    +  +  N+  DH++ H T + Y   K R+ E     E+  +  
Sbjct: 160 EVSSFQLET--IETFHPLVSAILNITPDHLNRHHTMENYIACKERITENQTADETVVL-N 216

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D   +E  K   N            K  + ++        Q     E         + 
Sbjct: 217 LEDPILREFGKTLPNHVVWFSGKRRLKKGYYYREEDRSIRYCQGQ-EEEFILSVRELQVV 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NA+ A  +  A+G+    + E L     V  R E+V T               +
Sbjct: 276 GRHNYENAMAAIAISRAMGVPMDKIKEGLRAFTAVEHRIEYVCTKRGVRYYNDSKGTNPD 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++ + +        + G G D+       +      +  + ++       E   +
Sbjct: 336 AAIKGIEAMDS-----PTCLIGGGYDKKSDFGDWIDAFKGKVKLLVLI------GETRAQ 384

Query: 428 IRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG   F+      EA++       + D +++
Sbjct: 385 IAKCCQDHGFNDFVYADTLEEAVKICYTKAKEGDEVLL 422


>gi|110667721|ref|YP_657532.1| folylpolyglutamate synthase / dihydropteroate synthase
           [Haloquadratum walsbyi DSM 16790]
 gi|109625468|emb|CAJ51895.1| folylpolyglutamate synthase / dihydropteroate synthase
           [Haloquadratum walsbyi DSM 16790]
          Length = 836

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 10/128 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-P 400
            PGRFE +  + R   + +D +H   +   +   +       + VVF    D+D      
Sbjct: 290 WPGRFELMSHSPR---VVLDGSHNPGATATLGSLLERYEYDELHVVFAAMQDKDHEAMIQ 346

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM--LNK 458
            +  I    A    V     R+E  E +   +           +  EA   AIE      
Sbjct: 347 SLPSITTAYATEPAV----ERAETAETLAPILQMNAKTVETIQSVPEATEEAIETAGARS 402

Query: 459 QDVLVVAG 466
            D+++V G
Sbjct: 403 DDLVLVTG 410


>gi|51598838|ref|YP_073026.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBi]
 gi|51573409|gb|AAU07434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBi]
          Length = 451

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 127/431 (29%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           +  GA+ ++       +     D                         +VV N       
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLKDFDDQIRYVLGKHDINDFKKADIVVKNPSVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                A R           +   I+AVTGT GKS++ S + Q+ +++   +   G     
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQVLKKNYPRAKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGISPLILEL-------------------SSWQLQS--LENFNPILSIITNV 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F       +     A   Y  +   +A        +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQASGITIIQDKAYYKYFSKFESKAKVILFSEFNPFV 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             + +       ++    +  S       F+ P    F V   L          +D    
Sbjct: 249 LDQDVFYYNKGEVYFNDNLIGSFSESQVVFMIPKLITFFVSYYL---------NMDLNHT 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L K   +  R EFV    +    Y D A T       + +++++ +    +    GG
Sbjct: 300 FKILNKFRGIEHRVEFVK-LVQNVMFYNDTASTIPD--STVLSVKSLKTNDNSINLIAGG 356

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
              +       KI        + T    +     KI   +      +    +  +A+  A
Sbjct: 357 TDKELDFSSFRKIIN-----LVKTWILIKGSATVKIIKILEKSSIQYFVFDSLRDAVNYA 411

Query: 453 IEMLNKQDVLV 463
           I++ +  D+++
Sbjct: 412 IKISSPGDIVL 422


>gi|332295509|ref|YP_004437432.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense
           DSM 14796]
 gi|332178612|gb|AEE14301.1| UDP-N-acetylmuramate--L-alanine ligase [Thermodesulfobium narugense
           DSM 14796]
          Length = 478

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 123/364 (33%), Gaps = 47/364 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH   P  I++  +A+V S A    +    +  + N P+L    +R  +   +  +  K 
Sbjct: 59  GHS--PDNISKDVDAVVYSGAIPSDNCELLSARQRNIPVL----SRAQM--LSKIIEQKF 110

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S + ++    G   SF IG                     L  
Sbjct: 111 S---IAVAGTHGKTTTTSMISKMLNDGGLDPSFLIGG-------------------ELND 148

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +        ++ +EA             K      TN+  DH  +    +   +    
Sbjct: 149 YGANARHGSGPYIVIEADESD---GSFLNYKPNIAVITNIDFDHPSFFSDLKMVED-YFE 204

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F + + ++   ++  D A ++ V +R  +        G   +      + +        
Sbjct: 205 KFMQGISEDGKLVVCGDHAVTRSVAERITDKEKIFYGFGDNNQVQCKNVILSGFGSYYDL 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                K  +    +PG   V N+L A  +   IG+D     + +     V  RFE     
Sbjct: 265 YIEGEKIGEITLNVPGIHNVLNSLAAFSVAKIIGLDFVSAFDSIASFSGVRRRFEL---K 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            +   I  DYAH    +  +L   R+I   + +V+        + +     K   +  D 
Sbjct: 322 CKDPYIIDDYAHHPEEINAVLNTARSIFKDKNLVLIFQPHRFSRTE-----KFLNNFCD- 375

Query: 413 AIVT 416
            I+T
Sbjct: 376 -ILT 378


>gi|257455148|ref|ZP_05620386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
 gi|257447481|gb|EEV22486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
          Length = 477

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 115/360 (31%), Gaps = 15/360 (4%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTPSPIYLAK 172
            ++LAV GT GK++  + +  I   +G+ +     G     +   +  +    S    + 
Sbjct: 103 RHVLAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVDTPDERLKKAFAHSSYLGSD 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +      V       S+    + +    +       NL  DH D      A    +  
Sbjct: 163 TTADHEGYFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHADIFPNLAAIQ-TQFH 221

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               ++P     I+ AD    +E +K+         ++         +      +  Q  
Sbjct: 222 HMVRMIPSNGKIIMPADTESLEETLKKGCWTPIWRTAIASTNPHADWQAKLMKQDGSQYE 281

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  +G      + + G   V N LVA      IG+  A   E L     +  R E VG  
Sbjct: 282 VMFDGHKGQVHWQMSGLHSVNNGLVAIAAAYNIGVSVAQACEALSNFAGIKRRMELVGTI 341

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRTIT----SGRIIVVFGCGGDRDQ-GKRPIMGK 404
             + +   +Y D+AH   ++E  L   +         +I  V     +  + G    +  
Sbjct: 342 DNHGKHIEVYDDFAHHPTAIETTLDGAKKRFADNPKRKIWAVIEPRSNTMKLGTHQGLLA 401

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  +AD  I     P + D     A+ I          +    I      +   D ++V
Sbjct: 402 PSASIADQVI--WYQPANLDWS--VADAIGNAANQQVMTSTDAIIEHIAAHIGDDDAVIV 457


>gi|225181532|ref|ZP_03734974.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167780|gb|EEG76589.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 410

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 124/384 (32%), Gaps = 46/384 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSP 167
           +       ++ VTG+SGK+S    +  I ++ G   +         S        TT S 
Sbjct: 1   MNNTFARPLIGVTGSSGKTSTILMLNSILEQCGNKPAMLESWKGPASFTKLVKNNTTGSR 60

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             LA                E     L Q ++ G      + TNL  DH+    TQ+ Y 
Sbjct: 61  PLLA----------------EVPVEALRQRQVKGEIFQCAALTNLTVDHLPACGTQERY- 103

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +     F   LP  + A++ ADD  S  +               Y    I  K +   + 
Sbjct: 104 HELKSEFFNQLPPSAKAVLNADDPRSLTLAGDGGLDTITFALH-YPNAMIVAKNIRTKNF 162

Query: 288 KQQVTISVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                +SV              +      P+ GE  +YNAL+AA L + + +D   +   
Sbjct: 163 SSVFELSVNTDIPTFSNRVISPQTTKVHLPMLGEQNIYNALLAATLALLLDVDLESIARA 222

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L +   +    E    +     +  D A    ++   L   + +   R +V+ G  G   
Sbjct: 223 LGRFPGIRRNMEI--ISVDKALVLDDGARNPAAIRAALAGAKLLGKRRTLVLHGIYGKGG 280

Query: 396 QGKRPIMGKIALDL-----ADIAIVTDD--------NPRSEDPEKIRAEIIHGIPGFIEK 442
           Q       +              IVT            R  + +    E+          
Sbjct: 281 QTINRCNARELAHWLQQSPGSQLIVTRSMYHTKHKYQVRVSEEKTFLTELKESKTEAAYF 340

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +A+ + +    ++D++++ G
Sbjct: 341 PDLPDAVESILSHACEEDLILLLG 364


>gi|293340738|ref|XP_002724748.1| PREDICTED: mitochondrial ribosomal protein S6-like [Rattus
           norvegicus]
 gi|293352105|ref|XP_002727920.1| PREDICTED: mitochondrial ribosomal protein S6-like [Rattus
           norvegicus]
          Length = 645

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/301 (6%), Positives = 59/301 (19%), Gaps = 13/301 (4%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           TRK+ +   +    +  E      GT+G  +   +  +I      + +        S   
Sbjct: 35  TRKWSTGIWNTWNMEPLEYGALEYGTTGIWNTGIWNTRIWNTRIWNYW---NMEHWSMEH 91

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            +          +    +               +  L+               N+   ++
Sbjct: 92  WNMEPLEYGATGIWSHWNMEHWNIEHWNMEPLENGALEYGTTGIWNHWNMEHWNMEHWNM 151

Query: 218 DYHQ----------TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
           +  +                     +             +  + ++ E     H +    
Sbjct: 152 EPLEYGTLEYGTTGVWNTGIWNHWSMEPLEYGTTGVWNHWNMEHWNMEHWSMEHWSMEHW 211

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                +     +     +   +   +     ++            +  +           
Sbjct: 212 NMEPLEYGTTGIWSHWNMEPLEYGALEYRTLEYGATRKWSTGIWNHWNMEPLEYGALEYG 271

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
                      L          G  + G      + H S     +        S     +
Sbjct: 272 TLEYGTLEYGTLEYGTTGVWNTGVWNTGVWNTGIWNHWSMEHWSMEHWSMEHWSMEHWSL 331

Query: 388 F 388
           F
Sbjct: 332 F 332



 Score = 40.3 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/273 (6%), Positives = 53/273 (19%), Gaps = 19/273 (6%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI--------- 147
           NTR + +   +    +H              +   +     +   +  + +         
Sbjct: 70  NTRIWNTRIWNYWNMEHWSMEHWNMEPLEYGATGIWSHWNMEHWNIEHWNMEPLENGALE 129

Query: 148 -GPTSTISSFAQDNRLT---TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203
            G T   + +  ++         P+         +    T +    S   L+        
Sbjct: 130 YGTTGIWNHWNMEHWNMEHWNMEPLEYGTLEYGTTGVWNTGIWNHWSMEPLEYGTTGVWN 189

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                  N+         + + +      +             +  +      ++     
Sbjct: 190 HWNMEHWNMEH------WSMEHWSMEHWNMEPLEYGTTGIWSHWNMEPLEYGALEYRTLE 243

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                            +       +  T+     ++  L                    
Sbjct: 244 YGATRKWSTGIWNHWNMEPLEYGALEYGTLEYGTLEYGTLEYGTTGVWNTGVWNTGVWNT 303

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            I    ++    +E   +     E       G 
Sbjct: 304 GIWNHWSMEHWSMEHWSMEHWSMEHWSLFLWGW 336


>gi|218547545|ref|YP_002381336.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ATCC 35469]
 gi|218355086|emb|CAQ87693.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia
           fergusonii ATCC 35469]
          Length = 438

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 136/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGINMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAH------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|77409926|ref|ZP_00786534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77171465|gb|EAO74726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 300

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 22/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +   +      TNL   H+DYH + + Y  AK  +  ++   +   + 
Sbjct: 25  MELSSFQL--MGVKEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLN 82

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +     SKE+ K          +           K      +  +++            +
Sbjct: 83  FNQG-ISKELAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDD--------IGV 133

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL    +    GI + ++ E L     V  R + +G            +   
Sbjct: 134 PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHGISFYNDSKSTN- 192

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +    K +    + ++I++   G DR      ++  I   L  + ++       E   
Sbjct: 193 --ILATQKALSGFDNTKVILI-AGGLDRGNEFDELIPDITG-LKHMVVL------GESAS 242

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +++         + +  +  +A+  A E+  + DV+++
Sbjct: 243 RVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILL 280


>gi|126172655|ref|YP_001048804.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|152998953|ref|YP_001364634.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS185]
 gi|160873539|ref|YP_001552855.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS195]
 gi|217971634|ref|YP_002356385.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS223]
 gi|304411642|ref|ZP_07393254.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|307306306|ref|ZP_07586051.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|166224727|sp|A3CZM2|MURC_SHEB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224728|sp|A6WID2|MURC_SHEB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082498|sp|A9KY30|MURC_SHEB9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766021|sp|B8E699|MURC_SHEB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125995860|gb|ABN59935.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|151363571|gb|ABS06571.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS185]
 gi|160859061|gb|ABX47595.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS195]
 gi|217496769|gb|ACK44962.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS223]
 gi|304349830|gb|EFM14236.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|306911179|gb|EFN41606.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|315265769|gb|ADT92622.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS678]
          Length = 488

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 145/411 (35%), Gaps = 48/411 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           S+A +L++          I +V   R+   L+      +G      +A+ GT GK++  S
Sbjct: 86  STAINLENPEILAAKELRIPIV---RRAEMLAELMRYRHG------VAIAGTHGKTTTTS 136

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +  +  ++G     +     ++S   + RL T   +    A +  S     H+    S 
Sbjct: 137 LIASVYGQAGRDPTFV-IGGLLNSAGTNARLGTSRYL---IAEADESDASFLHLQPMVS- 191

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                             TN+  DH+D +        +    F   LP    A++  DDA
Sbjct: 192 ----------------VVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDA 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEF 310
             +E+M R                           ++ + T+  +GK D D +  LPG+ 
Sbjct: 236 VVREIMPRIGRQLVTYGFSDDADV--QALNFSQQGHQCRFTVRRKGKADLDLVLNLPGQH 293

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSN 367
            V NAL A  +     ID + + + L +   +  RF+ +G  +       +  DY H  +
Sbjct: 294 NVLNALAAIAVATEDEIDDSAITQALVEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPS 353

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            +   +K  R     + +V+        R +       ++     D  ++ D     E P
Sbjct: 354 EVAATIKAARAGWPDKRLVMAYQPHRYTRTRDLYEDFVEVLSQ-VDCLLLLDVYSAGEAP 412

Query: 426 ------EKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                   +   I + G    I   +  +      ++L + D+L+  G G+
Sbjct: 413 ITGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLLTQGAGN 463


>gi|116491164|ref|YP_810708.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oenococcus oeni
           PSU-1]
 gi|122276654|sp|Q04ES9|MURD_OENOB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116091889|gb|ABJ57043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oenococcus oeni
           PSU-1]
          Length = 438

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 111/390 (28%), Gaps = 56/390 (14%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           Y  +     +  N P++     +  L         +    +LAVTG++GK++  + + ++
Sbjct: 70  YEKEIIKKALNLNIPVI--TEVQVAL--------DQFKGEVLAVTGSNGKTTTTTLIGKM 119

Query: 137 CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
            +   +     G      S                     LS      + +E SS  L  
Sbjct: 120 LKADNVDVKVGGNIGIPVSELM------------------LSDSQPRVLMLELSSFQLL- 160

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                IK      TNL   HID+H T+  Y  AK  + +     +   +  +        
Sbjct: 161 -GAQNIKPKIAVITNLFSSHIDFHHTRGNYLRAKFSITQHQTKDDYLVLNDSSIDSKDF- 218

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                    +               V    N   +    E         L GE  + N L
Sbjct: 219 --------AKRSQADDYYFSPTNTSVNTYVNDGTIYFDDEKIIDLSKVVLVGEHNLENIL 270

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A       G+ +  + + L     +  R E VG            A    + +  L + 
Sbjct: 271 AAVTAAKIFGVSNRAIEKVLTSFKGLEHRLEAVGVIKERTVYNDSKATDIEATQKALASF 330

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN---PRSEDPEKIRAEII 433
           +       I +   G DR      ++      ++ I      N      E          
Sbjct: 331 KE-----PINLIAGGLDRGDDLNRLVPNFKNVVSLITYGQTKNKLQSAGE---------K 376

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            GI   +      EA+  A E+     VL+
Sbjct: 377 AGIKQTVVVDTLKEAVAKAKELSRPGQVLL 406


>gi|332290159|ref|YP_004421011.1| UDP-N-acetylmuramate--L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330433055|gb|AEC18114.1| UDP-N-acetylmuramate--L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 61/211 (28%), Gaps = 7/211 (3%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +K     GC               K       +      + K  +  + + G+  ++NAL
Sbjct: 229 VKETLAMGCWSEQQFIGEDKEWFAKRLRNDCTKFEVYHQQQKVAEVEWNIVGQHNMFNAL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A       G+      + L        R E  G    G  +Y D+AH    +   L  +
Sbjct: 289 MAIAAAYHAGVSIEQSCKALATFVNANRRLEVKG-EVNGITVYDDFAHHPVEISATLTAL 347

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---LADIAIVTDDNPRSEDPEKIRAEII 433
           R    G + ++       +  K  +  K        AD   +            I  +  
Sbjct: 348 RDKVGGGVRILAVLEPRSNTMKMGVHTKELAPALVRADYVFLLQPENLPWQVVDIANQ-- 405

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             I   +   +    +   +E     D ++V
Sbjct: 406 -CIQPAVWTADIDLLVDKIVEEAQPTDHILV 435


>gi|108800221|ref|YP_640418.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119869349|ref|YP_939301.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126435844|ref|YP_001071535.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
 gi|122976796|sp|Q1B6X2|MURC_MYCSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224706|sp|A3Q1L7|MURC_MYCSJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224707|sp|A1UI53|MURC_MYCSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108770640|gb|ABG09362.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. MCS]
 gi|119695438|gb|ABL92511.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. KMS]
 gi|126235644|gb|ABN99044.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. JLS]
          Length = 484

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 71/277 (25%), Positives = 100/277 (36%), Gaps = 22/277 (7%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D+  + +AY  A    F E L      I   DD  S  + +R    G RV
Sbjct: 187 VVTNIEADHLDFFGSAEAYT-AVFDAFVERLTPGGALIACVDDPGSAALAERTAALGVRV 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISV-----EGKDFDFLFPLPGEFQVYNALVAAGLC 322
           L  G  G       +     +    ++      E         +PG     NAL A    
Sbjct: 246 LRYGSAGGRDLAGALVGWEQQGTGAVAHIQLAGESAPRAMRLSVPGRHMALNALGALLAA 305

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-- 380
           + +G D   VL+ L     V  RFE VGT + G R++ DYAH    +   L  +R +T  
Sbjct: 306 LQVGADPDTVLDGLAGFEGVRRRFELVGTAT-GVRVFDDYAHHPTEVAATLAALRAVTDQ 364

Query: 381 --SGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAE 431
              GR +VVF      R +      G      AD+  V D     E P        I   
Sbjct: 365 AGDGRAVVVFQPHLYSRTETFAREFGAALSA-ADLVFVLDVYGAREQPIAGVSGASIVEH 423

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  G+P      +           +   DV+V  G G
Sbjct: 424 V--GVP-VTYVPDFSAVAAQVAGAVRPGDVVVTMGAG 457


>gi|1237077|emb|CAA92428.1| folC [Neisseria gonorrhoeae]
          Length = 424

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 123/400 (30%), Gaps = 43/400 (10%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +S    R+       ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVSEVKKRMNLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGFKTGTLTSPHLLHYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLD------ 195
                 P                   I L        +     +  +     L+      
Sbjct: 84  IAINAEPVSDDTIIASFERIEAARGEISLTYFEFNALAAVDIFIREQVDVMILEVGLGGR 143

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++G        T++  DH  +          ++   +  + +     I   +     
Sbjct: 144 LDAVNGFDGDCAVVTSVDLDHQAFLGDT----VEQVGFEKAGVFRSGKPAICGQNPAPAS 199

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++  A   G ++L V  +    H  +    + + +   S          P P     Y  
Sbjct: 200 LVAHAEAIGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDGPARNRNALPFPALRGAYQL 258

Query: 316 LVAAGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             AA     +      +   +        L   PGRF+ +          +D  H  ++ 
Sbjct: 259 SNAACALTVLECLDDRLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAA 315

Query: 370 EMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEK 427
             + +N+  +    +   VF    D+D      + +   D  D   +   D PR    + 
Sbjct: 316 RALRRNLINLAYAQKRTAVFSMLSDKDIDG---VSETVKDQFDEWYIAPLDVPRGMTADA 372

Query: 428 IRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++A++    I          +A R A     + D +VV G
Sbjct: 373 LKAKLEQHHIENIQTFAAVRDAYRAAASKAGEDDRIVVFG 412


>gi|332638190|ref|ZP_08417053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           cibaria KACC 11862]
          Length = 447

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 136/404 (33%), Gaps = 48/404 (11%)

Query: 63  AIAQGAEAIVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
           A+  G + +V +      +    A   +  P +VV+          +          +A+
Sbjct: 59  ALLTGVDLVVKNPGIPYTIPVLVAAKDAGIP-IVVE---------VAVAQKYIRGEWIAL 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GK++    +  + +    S  QI     I +   +   +      L          
Sbjct: 109 TGSNGKTTTTEMIAAVLRTQATSDHQIVVAGNIGTPVSEVAPSLRDTDTL---------- 158

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                  E SS  L    +   K      TN+   H+DYH +++ Y  AKM + +     
Sbjct: 159 -----VTELSSFQL--MGMPEAKPNIAIITNIFASHLDYHGSRENYVAAKMGITKNQTAD 211

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I Y    + + + ++       V  +       +       +  + V  + E    
Sbjct: 212 DYLVINYDRAEWRE-LAQQTAATVVPVSRLDNSEDGAYEHDGQLYYQGELVMAAAELG-- 268

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG+  V NALVA  +     + +  + E L +   V  R +FVGT         
Sbjct: 269 -----VPGDHNVENALVAIAVGKLRHVPTNDIAEALRRFTGVEHRLQFVGTFDGRQVYND 323

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A    + EM L           +V+   G DR   +  ++  +   +  + +      
Sbjct: 324 SKATDIEATEMALSGFTA-----PVVLLAGGLDRGDDQMRLLQAMKAHVKALIVF----- 373

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +  +K+ A         +   +   A+  A E+    D++++
Sbjct: 374 -GQTADKVAAVGEALAIPVVHATDAPAAVAPAFELSEPGDIVLL 416


>gi|157961444|ref|YP_001501478.1| FolC bifunctional protein [Shewanella pealeana ATCC 700345]
 gi|157846444|gb|ABV86943.1| FolC bifunctional protein [Shewanella pealeana ATCC 700345]
          Length = 421

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 120/367 (32%), Gaps = 28/367 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT----------P 165
            I+ V GT+GK +  + ++   Q SG +         ++   +                 
Sbjct: 49  KIVTVAGTNGKGTTCAMIEAALQLSGKTVGVYSSPHLLNYNERVRINGIDATDTALVGAF 108

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             I  A+A   L+      ++         LD   L+         TNL    I    + 
Sbjct: 109 EAIEAARAEISLTFFEYATLAGLYLFKAAKLDVVLLEVGLGGRLDATNLIDADIAVVTSI 168

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                  +    EL+  E   I          ++         + +    G  ++     
Sbjct: 169 DLDHQEYLGDTRELVGAEKAGIFRQGRPA---IVGEPDCPQSVLDAANRVGASLYRVNSE 225

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVV 342
             +         +G+ FD            NA     +        SA ++        +
Sbjct: 226 FSYQCTNEDWHFKGQHFDLSHLPLPYLPQPNAATVIAVLEHLFPTISAEIIAKAVGNTQL 285

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E   T +   ++ VD AH  ++   +   +  +  GR+  + G   D+D   R ++
Sbjct: 286 AGRLE---TLNPSPKVIVDVAHNPHAARYLKSRLAAMVKGRLFALCGMLKDKDA--RSVL 340

Query: 403 GKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQ 459
            +++ D  D   + D + PR     ++ A +   +    + +  +  +AI+     L+  
Sbjct: 341 LELSSD-VDKWFLCDLSVPRGASAAELNALMPQDVDAATYQQMSDAWQAIK---AQLHSD 396

Query: 460 DVLVVAG 466
           D+++V G
Sbjct: 397 DIVIVFG 403


>gi|300905497|ref|ZP_07123261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300919643|ref|ZP_07136134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|301303812|ref|ZP_07209932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|300402647|gb|EFJ86185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300413283|gb|EFJ96593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|300840939|gb|EFK68699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|315253162|gb|EFU33130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 85-1]
          Length = 438

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALHPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|59710872|ref|YP_203648.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59478973|gb|AAW84760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 459

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 105/359 (29%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLA 171
               ++AV GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 QDRWVMAVAGTHGKTTTSSMLAWVLEECGYKPGFLVGGVLGNFGESARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                 +       NL  DH D          A +
Sbjct: 161 EYDSAFFDKRSKFV---------------HYRPRTLVLNNLEFDHADIFDDL-----AAI 200

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     L +  P+          + +++    GC                       Q  
Sbjct: 201 QRQFHHLIRTVPSTGRIFAPKQDKPLEQVLEQGCWSELEFTGEDGQWKAIKLQKDGSQFD 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  V NAL+       +G+   L  E L K      R E  G 
Sbjct: 261 VYFEGENVGQVNWDLVGDHNVSNALMVVASARHVGVTPDLACEALGKFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCG-GDRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++++ L  +R  +   +II V          G        +L  
Sbjct: 320 EVNGVTVYDDFAHHPTAIDLTLNGLRNKVGDKKIIAVLEPRSSTMKLGVHKDTLAASLHA 379

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
           AD   +         P+ I     ++           N I+A +   +      D ++V
Sbjct: 380 ADSVYLYQ-------PDNIAWSVDDVAQQCTQPAHTHNNIDAFVDMIVNEAQPGDQILV 431


>gi|116670943|ref|YP_831876.1| FolC bifunctional protein [Arthrobacter sp. FB24]
 gi|116611052|gb|ABK03776.1| FolC bifunctional protein [Arthrobacter sp. FB24]
          Length = 452

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGK--- 398
           PGR E + T      I VD AH    + +  + I    +  +++VV G   ++D  +   
Sbjct: 305 PGRLEVLRTAPT---IIVDAAHNPEGIRVSAEAIHEAFSFTKLVVVVGVLKEKDAEEILR 361

Query: 399 --RPIMGKIALDLADIAIVTDDN-PRS---EDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
             +  +G +A +       T  N PR+   ED  +I  ++  G           +A+  A
Sbjct: 362 QLKESLGDLAAEYC----FTQSNSPRAVPAEDLAEIALDLGFGEDNIHVAEKLDDALEWA 417

Query: 453 IEMLNKQ-DV---LVVAG 466
           +E      D+   ++V G
Sbjct: 418 VEHAEANEDLAGGVLVTG 435


>gi|300813254|ref|ZP_07093616.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512635|gb|EFK39773.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 86

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           M +   +LAD+ I+ D +N  +ED E +  E    +   + K +  EA+   + M    D
Sbjct: 1   MLEEIGELADLLILVDLENKSNEDIEILEKEAQASVKIVMSKSSLKEALNYIVPMARPDD 60

Query: 461 VLVVAG 466
           +++V+G
Sbjct: 61  LILVSG 66


>gi|87301212|ref|ZP_01084053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 5701]
 gi|87284180|gb|EAQ76133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 5701]
          Length = 463

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 112/361 (31%), Gaps = 36/361 (9%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +     +      +    + +TGT+GK++V   +  I   +GL +  +G           
Sbjct: 100 RVCGEMSVAWEASNEIPWIGITGTNGKTTVTHLLSHILNHAGLDAPMVGNVGI------- 152

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                 S   L        +     + VE SS+ ++      +    G +T L  DH++ 
Sbjct: 153 ------SAAELLIERREAGATPPDWLVVELSSYQIESS--AELAPRLGLWTTLTPDHLER 204

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T +AY   K  L +    +   A      A++    +           +G   +    
Sbjct: 205 HGTLEAYRAIKRSLLQNCGEQLLNADDADLRAHAGSWDRATWVTAGTRRLLGAGLQPFLW 264

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                +        S           LPG     N ++AA   + +G++ A++   L   
Sbjct: 265 IDGGMVMAASGPLFSA------AALALPGAHNRQNMVLAAATALKLGLEPAVIEAALRSF 318

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             VP R E +             A   ++ E+ +  +        +VV   G  +     
Sbjct: 319 PGVPHRLEQIRLLDGVRWFNDSKATNYDAAEVGITAVDG-----PMVVLAGGEIKQGDPE 373

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEML 456
             + +     A   ++           +  A ++ G            + EA+  A E+ 
Sbjct: 374 AWL-EALGRQAAAVVL------FGAAREAFAALLSGSGYAGTVELVEGQAEAVPLARELA 426

Query: 457 N 457
            
Sbjct: 427 R 427


>gi|319937470|ref|ZP_08011875.1| folylpolyglutamate synthase/dihydrofolate synthase [Coprobacillus
           sp. 29_1]
 gi|319807310|gb|EFW03919.1| folylpolyglutamate synthase/dihydrofolate synthase [Coprobacillus
           sp. 29_1]
          Length = 561

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 134/393 (34%), Gaps = 38/393 (9%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-- 149
           +  +DN ++F++   +    +     + + GT+GK S  ++++ + Q+ G          
Sbjct: 169 VYALDNFKRFMNDMCN---PQTLLKTIHIGGTNGKGSTTNYIRSVLQKEGYRVATFTSPV 225

Query: 150 --TSTISSFAQDNRLTTPSPIYLAKALSYLSSQG---VTHVSVEASSHGLDQHRLDGIKL 204
             T        +  +     +  A     L  +    +  + V  +     +HR+D    
Sbjct: 226 LVTRLEIMRINNQHIQDDEIVCYANRYMSLWLEYELSMFEIEVFIAIMFFLKHRVDFAVF 285

Query: 205 IAG-----SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             G       TN+    I  +          +    E +      II     +     K 
Sbjct: 286 EVGLGGALDATNIVAPIISANTNIGLDHTEYLGDTYEKIAFTKGGIIKDCIPFVTGEKKL 345

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                 + L   +  +FI ++ +  I    + TIS +   +  +      +Q  N+ +A 
Sbjct: 346 GCLNVFKELCQQHHSQFIKVQDIQNIEEN-KNTISFDYATYHVVLQTGARYQCENSALAI 404

Query: 320 GLCIAIGID-----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            + + +  +     +   L    +  V  GRFE V        + +D AH    +E   +
Sbjct: 405 EILLYLKNNGYIILNKETLLEGLRDAVWEGRFEVV---CDKPLMIIDGAHNKEGIEAFYQ 461

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII 433
           + +   + +  ++F    D+D      M +  L L D   V + D  R++  EK+     
Sbjct: 462 SAKKYQNIK--IIFSALRDKDTH---AMIEKLLKLTDDVTVCEFDFYRAQSAEKLAENF- 515

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   + +  +AI  +        V+ + G
Sbjct: 516 ----PVKIEKDWKKAIDESFHH---NGVVFITG 541


>gi|281425707|ref|ZP_06256620.1| tetrahydrofolate synthase [Prevotella oris F0302]
 gi|281400172|gb|EFB31003.1| tetrahydrofolate synthase [Prevotella oris F0302]
          Length = 428

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/374 (12%), Positives = 103/374 (27%), Gaps = 30/374 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----------------- 158
             + + GT+GK S +  +  + Q+ G           I    +                 
Sbjct: 48  KTIHIAGTNGKGSCSHSLAAMLQKKGYKVGLYTSPHIIDFRERIRVNGQCISEKAVIDFV 107

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD------QHRLDGIKLIAGSFTNL 212
           +       P++ +      +         +     ++          + I  I    TN+
Sbjct: 108 EKERNFFEPLHPSFFELTTALAFKYFAEQKVDIAVIEVGLGGRLDSTNIITPILSIITNI 167

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH  +          +     +            +     E   +  +          
Sbjct: 168 SFDHTQFLGNTLPQIAYEKAGIIKKGIPVIIGEYTKETRPIFESKAKEKSCPICFAQDNQ 227

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +  +    K      K +   S   +    L        +   L A  +  A GID +  
Sbjct: 228 EIIYSEADKTGGRTYKTKHFGSFHAE----LAGDYQVKNMNTLLNAINVLKAQGIDLSDE 283

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           +  L+ +  +          +R  +   D  H     + ++  I+     ++ +VFG   
Sbjct: 284 ICALDHVTTLTHLIGRWMEVNRLPKAICDTGHNVGGWQYLVPQIKAQPCKQLRIVFGMVD 343

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D+D     +MG +    A          R+   +KI  + +          +  EA   A
Sbjct: 344 DKDID--TVMGML-PKQAIYYWTQATTKRAVPADKISDKALQYGLSGHIYKSVKEAYSHA 400

Query: 453 IEMLNKQDVLVVAG 466
           +   +  D + + G
Sbjct: 401 VAEADNADFIFIGG 414


>gi|238752432|ref|ZP_04613909.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709365|gb|EEQ01606.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 507

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 95  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 143

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 144 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 200

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 201 ------------------LQPMVAIVTNIEADHMDTYQGDFGNLKQTFINFLHNLPFYGR 242

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 243 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLK-RLDKPLMTVT 301

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 302 LNAPGRHNALNAAAAVAVATEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGS 361

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 362 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMIFQPHRYTRTRDLYDDFANVLSQ-VDVL 420

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         +ML+  D+++V G
Sbjct: 421 LMLDVYAAGEPPIPGADSRSLCRTIRNRGKVDPILVSDSETVPEVLAQMLDGDDLILVQG 480

Query: 467 KGH 469
            G+
Sbjct: 481 AGN 483


>gi|227503057|ref|ZP_03933106.1| tetrahydrofolate synthase [Corynebacterium accolens ATCC 49725]
 gi|227076118|gb|EEI14081.1| tetrahydrofolate synthase [Corynebacterium accolens ATCC 49725]
          Length = 523

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+      ++D AH  +  + +   + R     R+I V     D+D     I
Sbjct: 380 PGRLERVRTSPT---TFIDAAHNPHGAKALGAALDRDFDFARLIGVVSIFADKDAQG--I 434

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +  +   L+++ I  + +PR+ D  ++        G        +   A   A+E+  + 
Sbjct: 435 LAALEPYLSEVVISQNSSPRALDAYELAETARDIYGEERVYVADDLPGAYAQAVELAEES 494

Query: 460 DV-----LVVAG 466
           +V     +V+ G
Sbjct: 495 EVQSGSGIVITG 506


>gi|309802481|ref|ZP_07696587.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           JCVIHMP022]
 gi|308220881|gb|EFO77187.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium dentium
           JCVIHMP022]
          Length = 496

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 118/429 (27%), Gaps = 44/429 (10%)

Query: 67  GAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           GA  +V SSA    +    A   +   I+   +    L            +  + V G  
Sbjct: 63  GARTVVFSSAIKPDNPEIVAAYEAGERIVHRSDILALL---------MQSKRAVTVAGAH 113

Query: 125 GKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           GK++ +S +  I   +G       S    G          D        + +A+A     
Sbjct: 114 GKTTTSSMLAHILVNAGEGELADPSYAIGGSIQGKDGATLDGGHAGKGSVLVAEADESDG 173

Query: 179 SQGVTHVSVE----ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S    H  +     A +  LD +  +     A                      A +R  
Sbjct: 174 SFAKYHPEIAIITNAEADHLDHYGTEAKYRAAFVEHAGRAGKAVIMCGDDDGALAVLRAL 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +  + +              ++       G   + +  + +         I +     + 
Sbjct: 234 KTEVARHVVVYSTQPSEDLGDL------NGAAHVRIESESESAQSGTEHFILHLPAGLVD 287

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           VE +       +PG     NA  A    + +G+D                RF+  G+ ++
Sbjct: 288 VEERRVPVTLTVPGIHNARNATAALLATVMLGVDVERAAAAATSFLGAARRFQIRGSVNQ 347

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DYAH    +  +L   R       I V        R         +     AD 
Sbjct: 348 -VTVIDDYAHHPTEIAALLDAARRRYPEAGIHVIFQPHLFSRTMFFAREFAEALAK-ADD 405

Query: 413 AIVTDDNPRSE--------DPEKIRAEIIH-----GIPGFIEKGNRIEAIRTAIEMLNKQ 459
            IVT   P  E         P+ I  E +               +   A +  +   +  
Sbjct: 406 VIVTGIFPAREKQEDFPTVSPDTIVNEAVKLEHEPADDWIRGVDDMRTAAQMMVMRAHHG 465

Query: 460 DVLVVAGKG 468
           DV+   G G
Sbjct: 466 DVIFTVGAG 474


>gi|293417964|ref|ZP_06660586.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
 gi|291430682|gb|EFF03680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
          Length = 438

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         + 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKIS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|158321182|ref|YP_001513689.1| FolC bifunctional protein [Alkaliphilus oremlandii OhILAs]
 gi|158141381|gb|ABW19693.1| FolC bifunctional protein [Alkaliphilus oremlandii OhILAs]
          Length = 439

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 108/388 (27%), Gaps = 40/388 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT------- 164
           ++    + + GT+GK S +SF+  + +  G                +             
Sbjct: 36  QNQLKFIHIAGTNGKGSTSSFIHSMLKAEGYQVGLFTSPHLHCYTDRIRINGVNISKEDF 95

Query: 165 ------------------------PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                                      + L   +   + + V +V +E    GL+     
Sbjct: 96  ARYTSMVEETIAPFYEQGFNHPALFDIVTLVAMMY-FAKENVDYVVLEVGLGGLNDATNI 154

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             + +A   T +G DH+D   T             +   +                    
Sbjct: 155 ISQSLASVITPIGIDHVDILGTDLKQIAYHKAGIIKSQGRVISTWQDPIVEEVLVETAAQ 214

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA   +L            K    H      I  + K             +    +   
Sbjct: 215 QNASLCLLRKEQISIIHQDFKEQIFHLNTPYGILRDCKIRMIGDHQIFNGALAALTLIIL 274

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               I   S   +      +   GR E +        I +D AH     E++   +    
Sbjct: 275 REDQILSISNESIYQGLYENYWAGRLELL---QDNPLILIDGAHNVQGSEVLASALTKYF 331

Query: 381 SGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPG 438
           + + I ++ G   D+D      +    +  A   I T  +NP++ DP+++   +      
Sbjct: 332 NNKKITLIIGMLKDKDVDG---VLNNLIPFAHKVIFTKPNNPKAMDPQELANRVNFFGKE 388

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   E++  A+E  +  ++ +  G
Sbjct: 389 TYITQTIEESVVLALENASLDEITIFTG 416


>gi|317493603|ref|ZP_07952024.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918546|gb|EFV39884.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 101/359 (28%), Gaps = 38/359 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             ++AV GT GK++ A  V  I +  G    F IG        +     +    I   + 
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEECGYEPGFVIGGVPGNFDVSARMGNSPFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +    V                         NL  DH D     +A        
Sbjct: 163 DCAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         S   +K+    GC               +           +
Sbjct: 203 QFHHLVRLVPGKGRIISPASDANLKQVMAMGCWSEQELSGEDGTWNARKLNPDASYFEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                  +  + L GE  ++N L+A      +G+  A     L+       R E  G  +
Sbjct: 263 LDGDVVGEVNWGLVGEHNMHNGLMAIAAARHVGVLPADACRALDSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------KI 405
            G ++Y D+AH   ++   L  +R+   G  RI+ V        +     MG        
Sbjct: 322 FGVKVYDDFAHHPTAILATLSALRSKVGGTARILAVLEP-----RSNTMKMGVSKNDLAP 376

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AL  AD   +   +     P  +       +       +    +    +     D ++V
Sbjct: 377 ALGRADEVFLFQPHH---IPWLVTEVAEACVQPAHWSADIDVLVDMIAKTAQPGDYILV 432


>gi|251788138|ref|YP_003002859.1| UDP-N-acetylmuramate [Dickeya zeae Ech1591]
 gi|247536759|gb|ACT05380.1| UDP-N-acetylmuramate [Dickeya zeae Ech1591]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 107/362 (29%), Gaps = 44/362 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AV GT GK++ A  V  I +  G     +       +F    RL       +    
Sbjct: 103 RWVIAVAGTHGKTTTAGMVTWILEDCGYQPGFV-IGGVPGNFTVSARLGDSPFFVVEADE 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +        V  S   L  +             NL  DH D     +A         
Sbjct: 162 YDCAFFDKRSKFVHYSPRTLILN-------------NLEFDHADIFDDLKAIQ-----KQ 203

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              L +  P             +K+    GC         + I   K             
Sbjct: 204 FHHLVRLVPGKGRIIVPTHDLHLKQVMGMGCWSEQELVGEEGIWKAKKVTTDASVFQVYL 263

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +    +  + L GE  ++N L+A      +G+  A     L        R E  GT   
Sbjct: 264 NDQIVGEVDWNLVGEHNMHNGLMAIAAARHVGVTPAEACRALGGFINARRRLELRGTA-H 322

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMG------KIA 406
           G  +Y D+AH   ++   L  +R+   G  RI+ V        +     MG        A
Sbjct: 323 GVSVYDDFAHHPTAILATLAALRSKVGGTARILAVLEP-----RSNTMKMGHCKNELAPA 377

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVL 462
           L  AD   +         P+ I  ++       ++       I T +EM        D +
Sbjct: 378 LGRADGVFLFQ-------PQHIPWQVAEVADACVQPAWWSADIDTLVEMINKTAQPGDHI 430

Query: 463 VV 464
           +V
Sbjct: 431 LV 432


>gi|28378181|ref|NP_785073.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           WCFS1]
 gi|38258048|sp|Q88WZ5|MURC_LACPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28271016|emb|CAD63921.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus plantarum
           WCFS1]
          Length = 436

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 101/373 (27%), Gaps = 54/373 (14%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +FL               + V GT GK+S    +  +      +S+ IG           
Sbjct: 95  EFLGKLMEGFTS------IGVAGTHGKTSTTGLLSHVLSHIAPTSYLIG---------DG 139

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
               TP   +            V +                         TN+  DH DY
Sbjct: 140 TGKGTPDARFFVFEADEYRRHFVAY------------------HPDYAIMTNVDFDHPDY 181

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           ++      +A  +   ++         + DD   + +                       
Sbjct: 182 YKDLADVQSAFQQFGNQVKKG---IFAWGDDESLRHL----DVDTPIYYYGTNDRDDFQA 234

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +          +    +    F  PL GE  V N+     +     ++   +   L  
Sbjct: 235 VNIKRTTKGSSFEVKYHDESLGKFEIPLFGEHNVLNSTAVIAVSYFEKVNLDEIRRELLD 294

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  RF           +  DYAH  + ++  L   R     + I+         + K
Sbjct: 295 FSGVKRRF--SEHQVGDMVMIDDYAHHPSEIKATLDAARQKYPDKEILAVFQPHTFSRTK 352

Query: 399 RPIMGKIALDL--ADIAIVTDD--NPRSEDPEKIRAEIIHGIPG---FIEKGNRIE--AI 449
             +M   A  L  AD   +T+   + R +  +    ++   +P     I   +     A 
Sbjct: 353 -ALMDGFAASLSKADHVFLTNIFSSAREKSGDVSSKDLAAKLPNGGEIITTDDMSALTAY 411

Query: 450 RTAIE-MLNKQDV 461
             A+   +   D+
Sbjct: 412 HNAVAVFMGAGDI 424


>gi|313888463|ref|ZP_07822130.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845492|gb|EFR32886.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 439

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 104/282 (36%), Gaps = 20/282 (7%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +V +EASS  L+       K      T +  DH+D+H+T+Q Y +AK ++F+     +  
Sbjct: 149 YVVIEASSFQLE--NTVDFKPHIAVLTYVTSDHLDWHKTKQNYVDAKFKIFKNQDENDFA 206

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            + Y D   +++   +A      +     +G ++   K+      +   I          
Sbjct: 207 ILNYEDKELAEKYNLKAEKYYFSMEKTSEKGAYLDQGKIYFTDGDKTEEILD-----VKD 261

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG+  + N + A   C  + ID  ++ + +     V  R EFV              
Sbjct: 262 IKIPGDHNIRNIMAAVIACKLLKIDLDVIKKSIVSFTGVEHRIEFVREVDGVKYYNDSKG 321

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
              +S E+ +  +         VV   GG D+      ++ K    L    +        
Sbjct: 322 TNPDSTEVAVAAMDG------DVVLIAGGYDKGADFDNLIEKSKDKLKTAILF------G 369

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  EKI     +    F    +  +A+  A ++  K D +++
Sbjct: 370 QTAEKISNSCKNHGVEFYITEDLKKAVELAKKLAIKGDDVLL 411


>gi|254441842|ref|ZP_05055335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
 gi|198251920|gb|EDY76235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 307]
          Length = 465

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 126/407 (30%), Gaps = 67/407 (16%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFV 133
                  +  +    P+   ++   F   FA+  + +      ++AVTG++GKS+ ++ +
Sbjct: 81  PAPHPAIARAMAEGCPV--DNDIGLFFRSFATSEWDEFDSIPKVIAVTGSNGKSTTSALI 138

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             I + +G      G          +        + L                   SS+ 
Sbjct: 139 YHILEHAGRPVQLGGNIGRGVLDLDEAHDGEVIVLEL-------------------SSYQ 179

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           +D  R   +      FTNL  DH+D H     YF AK RLF E  P  +       D   
Sbjct: 180 IDLAR--ALTPDVAVFTNLTPDHLDRHAGHGGYFAAKRRLFAEGGPDRAVI---GVDEAE 234

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-------DFDFLFPL 306
              +    + G     V        L  +      ++  ++   K       D   +  L
Sbjct: 235 GHYIANQLSEGPSDDRVIRVSSGQKLDGIGWSVFARKRFLNEYRKGRQVGSIDLRAIAGL 294

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NA  A   C A+GI   ++   L     +P R + +  ++    +    A   
Sbjct: 295 PGVHNHQNACAAYAACRALGIGPRVIEAALISFKGLPHRSQLIAEHAGVRFVNDSKATNV 354

Query: 367 NSLEMILKNIRTITSGRIIVV-FGCGGDRDQG-------KRPIMGKIALDLADIAIVTDD 418
           ++    L     +   R I       G  D         K  ++G+ A   A        
Sbjct: 355 DAAAKALAAFDKV---RWICGGLEKDGGLDALLPAPTVVKAYVIGREAAAFAMK------ 405

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                         + G+      G+   A+  A       + +++A
Sbjct: 406 --------------LKGLD-VEVCGDMATAVTQAAADAQAGETVLLA 437


>gi|308187623|ref|YP_003931754.1| Folylpolyglutamate synthase [Pantoea vagans C9-1]
 gi|308058133|gb|ADO10305.1| Folylpolyglutamate synthase [Pantoea vagans C9-1]
          Length = 422

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 9/183 (4%)

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +      S   +D           QV     A  L         +    +     +   
Sbjct: 227 WSWHAQAESWSLRDVQGELNDLPLPQVPLPNAATALVALRVSGLEVSEMQIRASLPLAML 286

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGK 404
                T S   R+ +D AH  ++   +   + T+   G++  V G   D+D         
Sbjct: 287 PGRFQTISESPRVILDVAHNPHAAGYLASRLATLPKRGKVHAVVGMLHDKDIAGT---LA 343

Query: 405 IALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               + D       D PR    E++   +  G        +   A + A E    QD ++
Sbjct: 344 ALAPMVDAWYCAPLDGPRGASAEQLLDVLPQG----EAFNSVELAWQQARERAAPQDTVL 399

Query: 464 VAG 466
           V G
Sbjct: 400 VCG 402


>gi|306836710|ref|ZP_07469673.1| tetrahydrofolate synthase [Corynebacterium accolens ATCC 49726]
 gi|304567388|gb|EFM42990.1| tetrahydrofolate synthase [Corynebacterium accolens ATCC 49726]
          Length = 523

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+      ++D AH  +  + +   + R     R+I V     D+D     I
Sbjct: 380 PGRLERVRTSPT---TFIDAAHNPHGAKALGAALDRDFDFARLIGVVSIFADKDAQG--I 434

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +  +   L+++ I  + +PR+ D  ++        G        +   A   A+E+  + 
Sbjct: 435 LAALEPYLSEVVISQNSSPRALDAYELAETARDIYGEERVYVADDLPGAYAQAVELAEES 494

Query: 460 DV-----LVVAG 466
           +V     +V+ G
Sbjct: 495 EVQSGSGIVITG 506


>gi|260435255|ref|ZP_05789225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
 gi|260413129|gb|EEX06425.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
          Length = 461

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 104/308 (33%), Gaps = 27/308 (8%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                     + +TGT+GK++V   +  + + SGL++   G                 S 
Sbjct: 103 AWDALQQIPWIGITGTNGKTTVTHLLSHVLEASGLTAPMGGNMGL-------------SA 149

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             LA  +   ++     + +E SS+ ++      +    G +T L  DH++ H + +   
Sbjct: 150 ADLAFQIGSGATPRPDWLVMELSSYQIEA--APAVAPKIGIWTTLTPDHLERHGSLE--- 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            A   +   LL +   A+  ADD   ++  +                       +     
Sbjct: 205 -AYRAIKRGLLERSECALFNADDPDLRQQRRSWDRGTWVSSEGARPDDQPADLWIDDEGM 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            +     +   D      +PG     N L+ A   + +G+    + + L     VP R E
Sbjct: 264 VRNNATRLFAAD---ALAMPGRHNRQNLLLVAAASLKVGLSPQQIADALRTFPGVPHRLE 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +GT +         A   ++ E+ L+ ++       +VV   G  +       + ++  
Sbjct: 321 KLGTLAGASVFNDSKATNYDAAEVALRAVQG-----PVVVLAGGQTKQGDAGGWLEQLHT 375

Query: 408 DLADIAIV 415
               + + 
Sbjct: 376 KACSLIVF 383


>gi|225848867|ref|YP_002729031.1| bifunctional protein FolC [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643167|gb|ACN98217.1| bifunctional protein FolC [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 411

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/399 (12%), Positives = 111/399 (27%), Gaps = 55/399 (13%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            +  L   ++          + V GT+GK S  ++++ + +  G  +        I    
Sbjct: 21  IKAALEDVSN---PHKNFKSILVAGTNGKGSTCAYLESLFRHHGYKTGLFTSPHLIQENE 77

Query: 158 QD-------------------------NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
           +                            LT      L              + +     
Sbjct: 78  RWQINRKNIPQDRLESYIKDLLPIIQKYNLTYFEACTLL----AFKYFSDESIDIAVVEV 133

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL   R D   ++    + +     D+        +        +  K  PA++  +   
Sbjct: 134 GLG-GRWDSTNVLDPCVSVITNVSFDHMHLLGDTLDKIAFEKTGITRKNKPAVVGRNQKE 192

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
             + +K+      +   +        +++      + +     + K              
Sbjct: 193 IIDWLKKR---KIKEFYIQGLDFRSTVRESLLWDFEFKDFYLKDIKLSMIGTRQIENVST 249

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
             A                 ++   K     GR + +        I +D  H    L   
Sbjct: 250 SLASFLVFCEKNNIKVDKETIKRALKNTFWQGRMQILSEEPL---IILDGGHNEEGLLKS 306

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRS---EDPEK 427
            + ++    S ++I V+    D++  K   M KI  + +   + T  N  R    ED  K
Sbjct: 307 FQELKELFKSKKVITVYSFMKDKETEK---MFKIIKENSFKTVATKINVSRGMEKEDFYK 363

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  E            N +EA+  A + ++   ++ + G
Sbjct: 364 LGEE--------NFIENLLEAVELAKKYVDDNSLIFITG 394


>gi|218282186|ref|ZP_03488485.1| hypothetical protein EUBIFOR_01067 [Eubacterium biforme DSM 3989]
 gi|218216822|gb|EEC90360.1| hypothetical protein EUBIFOR_01067 [Eubacterium biforme DSM 3989]
          Length = 386

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/316 (10%), Positives = 78/316 (24%), Gaps = 10/316 (3%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +  +F       +        + V GT+GK S + +++ +  + G           I   
Sbjct: 19  DLLEFRQWLTDAMPNHTALKKIQVAGTNGKGSTSIWLRDLLMKKGYRVGVFTSPHLIHHT 78

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
            +     T   +   + +     +  +   +      L       I+             
Sbjct: 79  ERIRVNDTCISLADWERIYDQYEELFSFHKMTMFEMDLWMSLAYFIEQKVDYCIIEAGMG 138

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGY 272
                T    + A +     L   E     +   AY K  + + +        +      
Sbjct: 139 GRLDATTALDYQACLITNVGLDHTEYLGNTFEQIAYEKSGIFKPNVPALTTEDKPECRKV 198

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                            Q T  +      F    P       +L    L +         
Sbjct: 199 MELVADYMNTPLCFIDCQETDVLRWNGMTFHLNPPLYQAKNLSLALETLNVLGIWLEENE 258

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           ++ +       GRF  +        + +D AH  + +  ++  ++          F    
Sbjct: 259 IQEVIDHFQWAGRFMVLRKAPL---VLLDGAHNVHGITALIHALKNFHGKIY---FSVLK 312

Query: 393 DRDQGKRPIMGKIALD 408
           ++D      + +    
Sbjct: 313 EKDAPHMIELLQTISK 328


>gi|295694747|ref|YP_003587985.1| cyanophycin synthetase [Bacillus tusciae DSM 2912]
 gi|295410349|gb|ADG04841.1| cyanophycin synthetase [Bacillus tusciae DSM 2912]
          Length = 891

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            + VDY H  +S   + + ++     R+  V G  GDRD       G+ A        V 
Sbjct: 732 YVMVDYGHNPHSFAAVGQLVQQWPGPRVTGVIGVPGDRDDSIIQAAGREAARHFQRIWVK 791

Query: 417 DD-NPRSEDPEKIRAEIIHGIPGF------IEKGNRIEAIRTAIEMLNKQDVLVV 464
           +D + R  D  ++   +   + G               A+  A+      +++VV
Sbjct: 792 EDRDTRGRDKGEVAGLLTEAVRGVNPLLPLYVNLEETAALGEAVSSSLPGELVVV 846


>gi|257082265|ref|ZP_05576626.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol]
 gi|256990295|gb|EEU77597.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis E1Sol]
          Length = 445

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 88/306 (28%), Gaps = 38/306 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG                P   + A  
Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFE 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   + +                         TN+  DH DY+++ +  F+A  + 
Sbjct: 156 ACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQT 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K   A         K + +           V  +                    
Sbjct: 197 MAHQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVY 251

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +     F+ P  G   + NAL    +     +D   V E +     V  RF     + 
Sbjct: 252 HKDDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS- 310

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
               I  DYAH    ++  +   R       II VF      R         + ALDLAD
Sbjct: 311 -DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLAD 368

Query: 412 IAIVTD 417
              + +
Sbjct: 369 EVFLCN 374


>gi|254556389|ref|YP_003062806.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           JDM1]
 gi|300767141|ref|ZP_07077053.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180361|ref|YP_003924489.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|254045316|gb|ACT62109.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           JDM1]
 gi|300494960|gb|EFK30116.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045852|gb|ADN98395.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 436

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 102/373 (27%), Gaps = 54/373 (14%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +FL               + V GT GK+S    +  +      +S+ IG           
Sbjct: 95  EFLGKLMEGFTS------IGVAGTHGKTSTTGLLSHVLSHIAPTSYLIG---------DG 139

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
               TP   +            V +                         TN+  DH DY
Sbjct: 140 TGKGTPDARFFVFEADEYRRHFVAY------------------HPDYAIMTNVDFDHPDY 181

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           ++      +A  +   ++         + DD   + +                       
Sbjct: 182 YKDLADVQSAFQQFGNQVKKG---IFAWGDDESLRHL----DVDTPIYYYGTNDRDDFQA 234

Query: 280 KKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +          +    +   +F  PL GE  V N+     +     ++   +   L  
Sbjct: 235 VNIKRTTKGSSFEVKYHDESLGEFEIPLFGEHNVLNSTAVIAVSYFEKVNLDEIRRELLD 294

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  RF           +  DYAH  + ++  L   R     + I+         + K
Sbjct: 295 FSGVKRRF--SEHQVGDMVMIDDYAHHPSEIKATLDAARQKYPDKEILAVFQPHTFSRTK 352

Query: 399 RPIMGKIALDL--ADIAIVTDD--NPRSEDPEKIRAEIIHGIPG---FIEKGNRIE--AI 449
             +M   A  L  AD   +T+   + R +  +    ++   +P     I   +     A 
Sbjct: 353 -ALMDGFAASLSKADHVFLTNIFSSAREKSGDVSSKDLAAKLPNGGEIITTDDMSALTAY 411

Query: 450 RTAIE-MLNKQDV 461
             A+   +   D+
Sbjct: 412 HNAVAVFMGAGDI 424


>gi|322421364|ref|YP_004200587.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
 gi|320127751|gb|ADW15311.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
          Length = 453

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 129/397 (32%), Gaps = 47/397 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS    +      +       VV          AS         ++A+TGT+GK+
Sbjct: 69  ADLIVVSPGVPMDIKPLEMARAQRRRVVSEV-----ELASWFIKAP---MVAITGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   +I +  G  +F  G                   I LA +   +       V V
Sbjct: 121 TTTTLTGEIFKACGYQTFVGGNIGDPL-------------IDLAMSGEEVDR-----VVV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   ++  +       NL  DH+D + + Q Y +AK+R+FE        A++ 
Sbjct: 163 ELSSFQLE--GIESFRPHVAVLLNLTEDHLDRYHSFQEYIDAKLRIFEN-QGPADFAVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD        +       +       + I  +       ++   +      F       
Sbjct: 220 IDDPLVAACASKLKAQLFPMSRFHELQEGISYRDGFITFARKGKVLRFGTDGFKLK---- 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + +    + +G D     + ++    +P R EFV   +              
Sbjct: 276 GVHNLDNIMASMASTLLMGCDGDCAYQAVKSFKGLPHRMEFVEEVNGVSYYEDSKGTNVG 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-MGKIALDLADIAIVTDDNPRSEDPE 426
           S+   L++  +        +    G +D+G     + K+  +     ++        +  
Sbjct: 336 SVVKSLESFDS-------GITLIAGGKDKGGSYEPLAKLVSERVSHLVLIG------EAR 382

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +   E +  +          EA+  A  +     V++
Sbjct: 383 QRMKEALGQLTDTRFADTLEEAVDIARRLTEPGGVVL 419


>gi|315443923|ref|YP_004076802.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
 gi|315262226|gb|ADT98967.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium sp. Spyr1]
          Length = 475

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 91/469 (19%), Positives = 148/469 (31%), Gaps = 67/469 (14%)

Query: 36  DSRHIQAGWIFVAIV--GNKED-GHLFIPQAIAQ---GAEAIVVSSAYSLQDFSATIRS- 88
           DSR +      +A+   G +   GH   P A+     G  A+V + A   +     + + 
Sbjct: 47  DSRGL------IALRARGAQVRIGHD--PSALDMLPGGPTAVVTTHAAIPKTNPELVEAR 98

Query: 89  --NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF- 145
               P+++        ++ A  +  +     L VTGT GK+S  S +    Q  G     
Sbjct: 99  RRGIPVILRP------AVLARLMDDRTS---LLVTGTHGKTSTTSMIIVALQHCGFDPSF 149

Query: 146 -QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
              G      + A     +T                         +        L     
Sbjct: 150 AVGGDLGQAGTNAHHGSGSTF-----------------------VAEADESDGSLLEYSP 186

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+  DH+D++ T + Y  A    F + +      ++  DD  +  + +R    G
Sbjct: 187 DVAVVTNIEADHLDFYGTVENYT-AVFDQFVDRIKPGGALVVCVDDPGAAALAERTAALG 245

Query: 265 CRVLSVGYQGKFIHL---KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            RVL  G                     ++++  E +       +PG     NAL A   
Sbjct: 246 IRVLRYGSAPGLDATLLDWSQLGTGAVAEISVRAEDRPRTMRLSVPGRHMALNALGALLA 305

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G +   VL+ L     V  RFE VGT   G R++ DYAH    +   +  +R +  
Sbjct: 306 ATQAGAEIDAVLDGLAGFDGVRRRFELVGTAG-GVRVFDDYAHHPTEVRAAITALRAVAE 364

Query: 382 G----RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR--AEIIH 434
                R + VF      R +             AD   V D     E P      A I  
Sbjct: 365 QTPGARTVAVFQPHLYSRTETFATEFAASLST-ADEVFVLDVYAAREQPLPGVSGATIAD 423

Query: 435 GIPG-FIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET--VHIVTNGEK 480
           G+        +           ++  DV+V  G G  T     +    +
Sbjct: 424 GVSAPVTYIADFSAVAARVAAAVSAGDVVVTMGAGDVTMLGQEILAEVR 472


>gi|154245140|ref|YP_001416098.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthobacter autotrophicus
           Py2]
 gi|229620439|sp|A7IEJ8|MURC_XANP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154159225|gb|ABS66441.1| UDP-N-acetylmuramate--alanine ligase [Xanthobacter autotrophicus
           Py2]
          Length = 470

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 88/282 (31%), Gaps = 19/282 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D+ +T     +A  + F E +P    A++  D    + ++ R  
Sbjct: 173 LPTEVAIVTNVDPEHLDHFKTFDKVQDA-FKTFVENVPFYGFAVMCIDHPVVQALVGRIE 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE------GKDFDFLFPLPGEFQVYNA 315
           +          Q     +         +   +          +      P+PG+    NA
Sbjct: 232 DRRVITYGENPQADVRLVDVDLKGGITRFGVVFRNRAGETVHEISGLKLPMPGKHNALNA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   + +    ++E +     V  RF   G    G  ++ DY H    +  +LK 
Sbjct: 292 TAAIAVAHELKVPDDKIIEAIANFGGVKRRFTRTG-EWNGVTVFDDYGHHPVEIAAVLKA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAE-- 431
            R  + G++I V      R      +  +       AD  +V       E P +      
Sbjct: 351 ARAASEGQVIAVV--QPHRYSRLASLFDEFCTCFNDADHVVVAPVYAAGETPIEGADRDH 408

Query: 432 -----IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                I HG              +    +    D ++  G G
Sbjct: 409 LVQGLIAHGHRSVTALEGPERLAQVVGGLAKPGDYVICLGAG 450


>gi|56461361|ref|YP_156642.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Idiomarina loihiensis L2TR]
 gi|56180371|gb|AAV83093.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Idiomarina loihiensis L2TR]
          Length = 433

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 35/365 (9%)

Query: 106 ASRLYGK--HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
           A  L+        +LAV GT GK++ AS +  I + +G     +       +F    RLT
Sbjct: 80  AQWLHDNVLTQRWVLAVAGTHGKTTTASMLAWILEDNGFDPGFM-IGGVPGNFPVSARLT 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             +   +       +        V  +   L  +             NL  DH D     
Sbjct: 139 DSNFFVIEADEYDTAFFDKRSKFVHYAPDTLILN-------------NLEFDHADIFPDL 185

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            A       L   +       +   D A  + + +   +   R+   G     +      
Sbjct: 186 AAIQRQFAHLLRVVPDTGQVILPAGDKALDEVLGQGCWSPVVRMGEQGDWQTKLLKTDGT 245

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                 Q             + + G   V NA++A      +GI +    + L +     
Sbjct: 246 EFEVHYQSKC-----IAQVSWNVLGTHNVNNAMMAIIAAAHVGIKAEQSAQALNRFRSPK 300

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIM 402
            R E +G   RG +++ D+AH  ++++  +  +R      RII V        +     M
Sbjct: 301 RRMELLG-EHRGVKVFDDFAHHPSAIKTTVSGLRQHQPDSRIIAVLEP-----RSNTMKM 354

Query: 403 GKIALDLADIAIVT---DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           G      +D  + +    DN     PE ++ ++   +P      +  + +   +  +   
Sbjct: 355 GV----HSDTLVQSLEDADNVFVLQPEGLKWQLAEKMPKAHVFESTDDLLAGLLAEVRAG 410

Query: 460 DVLVV 464
           D +++
Sbjct: 411 DAVLI 415


>gi|317474538|ref|ZP_07933812.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909219|gb|EFV30899.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 106/336 (31%), Gaps = 37/336 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +A
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLFHQSHIGCTAF-LGGISKNYGTNLLLSQASPYTVIEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             +  S       +                      T    DH+D + T++AY  +    
Sbjct: 170 DEFDRSFHWLSPYMSV-------------------ITATDPDHLDIYGTREAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVT 292
              + P  +  I           ++     G RV +        H + +           
Sbjct: 211 TTLIQPGGALIIRKGL------ALQPDVQPGVRVYTYSRDEGDFHAENIRIGNGEIFIDF 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ + +  D    +P    + N + A  L    G+    + + +     V  RF+F    
Sbjct: 265 VAPDTRINDIRLGVPIGINIENGVAAMALAHLNGVTDEEIKQGMASFRGVDRRFDF-KIK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-- 410
           +       DYAH    +   +K++R +   + I          +  R      A  L+  
Sbjct: 324 TSRLVFLSDYAHHPAEIAQSVKSVRELYQDKKITAIFQPHLYTRT-RDFYKDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFI 440
           D  I+T+  P  E P        I   +  GI   I
Sbjct: 383 DEVILTEIYPAREQPIPGVSSRLIYDNLRPGIEKCI 418


>gi|315656825|ref|ZP_07909712.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492780|gb|EFU82384.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 499

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 78/279 (27%), Gaps = 21/279 (7%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D+  +  A+  A    F   L K    ++ ADDA  K + ++    G   
Sbjct: 195 VITNIEPDHLDHWGSSAAFEQA-FVNFTGRLRKGGTLVLCADDAGVKRLAEQVSERGGAD 253

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL----------- 316
                   F        +    +  +              G+   +  L           
Sbjct: 254 GPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLRIGGQHMLL 313

Query: 317 ---VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
               A G    +G+D    +  L        R + VG    G RIY DY H    +   L
Sbjct: 314 NAGGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVG-ERDGVRIYDDYGHHPTEIAATL 372

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +  R +     ++V        +         ++     D   V       E P      
Sbjct: 373 QAARDLAGKGRLLVCFQPHLYSRTYHNVDAFARVFAT-VDDLTVCSVYAAREAPIPGVNG 431

Query: 432 --IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             I   +       +   A   A       D L+  G G
Sbjct: 432 NIITEHLGKGTYVADMYAAGLHAFRAARPGDFLLFLGAG 470


>gi|301026104|ref|ZP_07189579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
 gi|300395675|gb|EFJ79213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
          Length = 438

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 135/398 (33%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKICVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGINMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|168244085|ref|ZP_02669017.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194445921|ref|YP_002043673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194449308|ref|YP_002048459.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194404584|gb|ACF64806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194407612|gb|ACF67831.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337012|gb|EDZ23776.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 457

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|156935389|ref|YP_001439305.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166224688|sp|A7MIF0|MURC_ENTS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156533643|gb|ABU78469.1| hypothetical protein ESA_03247 [Cronobacter sakazakii ATCC BAA-894]
          Length = 488

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 126/411 (30%), Gaps = 53/411 (12%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +AV GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAVAGTHGKTTTTAMVSS 139

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   +GL    +     + +     RL     +      S  S                 
Sbjct: 140 IYAEAGLDPTFV-NGGLVKAAGTHARLGNSRYLIAEADESDASFLH-------------- 184

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++ +    TN+  DH+D +             F   LP    A++  DD   +E
Sbjct: 185 ------LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRE 238

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++ R                 +   +           +  +  +       PG     NA
Sbjct: 239 LLPRVGRQITTYGFSEDADVRVENYR-QTGAQGHFTLVRQDKPELHVTLNAPGRHNALNA 297

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTSN 367
             A  +    GI+   +L  LE       RF+F+G               +  DY H   
Sbjct: 298 AAAVSVATEEGIEDDAILRALESFQGTGRRFDFLGEFPLANVNGKSGTAMLVDDYGHHPT 357

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDP 425
            ++  ++  R     +  +V      R    R +    A  L+  D+ ++ D  P  E P
Sbjct: 358 EVDATVRAARAGWPEKN-LVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAGEAP 416

Query: 426 ------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                   +   I   G    I   +  +       +L+  D+++V G G+
Sbjct: 417 IPGADSRSLCRTIRARGKVDPILVSDPAQVAAMLAPVLSGNDLILVQGAGN 467


>gi|29376436|ref|NP_815590.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis V583]
 gi|255972446|ref|ZP_05423032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1]
 gi|256959228|ref|ZP_05563399.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5]
 gi|256961595|ref|ZP_05565766.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96]
 gi|257084882|ref|ZP_05579243.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1]
 gi|257090198|ref|ZP_05584559.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188]
 gi|257416351|ref|ZP_05593345.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis AR01/DG]
 gi|257419600|ref|ZP_05596594.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11]
 gi|257422294|ref|ZP_05599284.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98]
 gi|300860238|ref|ZP_07106325.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD
           Ef11]
 gi|44888194|sp|Q833N6|MURC_ENTFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29343900|gb|AAO81660.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis V583]
 gi|255963464|gb|EET95940.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T1]
 gi|256949724|gb|EEU66356.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis DS5]
 gi|256952091|gb|EEU68723.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Merz96]
 gi|256992912|gb|EEU80214.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis Fly1]
 gi|256999010|gb|EEU85530.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis CH188]
 gi|257158179|gb|EEU88139.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ARO1/DG]
 gi|257161428|gb|EEU91388.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T11]
 gi|257164118|gb|EEU94078.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis X98]
 gi|300849277|gb|EFK77027.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis TUSoD
           Ef11]
          Length = 445

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 88/306 (28%), Gaps = 38/306 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG                P   + A  
Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFE 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   + +                         TN+  DH DY+++ +  F+A  + 
Sbjct: 156 ACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQT 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K   A         K + +           V  +                    
Sbjct: 197 MAHQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVY 251

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +     F+ P  G   + NAL    +     +D   V E +     V  RF     + 
Sbjct: 252 HKDDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS- 310

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
               I  DYAH    ++  +   R       II VF      R         + ALDLAD
Sbjct: 311 -DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLAD 368

Query: 412 IAIVTD 417
              + +
Sbjct: 369 EVFLCN 374


>gi|59800717|ref|YP_207429.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria gonorrhoeae FA 1090]
 gi|194097986|ref|YP_002001034.1| FolC protein [Neisseria gonorrhoeae NCCP11945]
 gi|239998453|ref|ZP_04718377.1| FolC protein [Neisseria gonorrhoeae 35/02]
 gi|240013578|ref|ZP_04720491.1| FolC protein [Neisseria gonorrhoeae DGI18]
 gi|240016017|ref|ZP_04722557.1| FolC protein [Neisseria gonorrhoeae FA6140]
 gi|240080158|ref|ZP_04724701.1| FolC protein [Neisseria gonorrhoeae FA19]
 gi|240112372|ref|ZP_04726862.1| FolC protein [Neisseria gonorrhoeae MS11]
 gi|240115112|ref|ZP_04729174.1| FolC protein [Neisseria gonorrhoeae PID18]
 gi|240117395|ref|ZP_04731457.1| FolC protein [Neisseria gonorrhoeae PID1]
 gi|240120647|ref|ZP_04733609.1| FolC protein [Neisseria gonorrhoeae PID24-1]
 gi|240122952|ref|ZP_04735908.1| FolC protein [Neisseria gonorrhoeae PID332]
 gi|240125203|ref|ZP_04738089.1| FolC protein [Neisseria gonorrhoeae SK-92-679]
 gi|240127658|ref|ZP_04740319.1| FolC protein [Neisseria gonorrhoeae SK-93-1035]
 gi|254493173|ref|ZP_05106344.1| bifunctional protein folC [Neisseria gonorrhoeae 1291]
 gi|260441071|ref|ZP_05794887.1| FolC protein [Neisseria gonorrhoeae DGI2]
 gi|268594314|ref|ZP_06128481.1| bifunctional protein folC [Neisseria gonorrhoeae 35/02]
 gi|268596309|ref|ZP_06130476.1| bifunctional protein folC [Neisseria gonorrhoeae FA19]
 gi|268598433|ref|ZP_06132600.1| folC [Neisseria gonorrhoeae MS11]
 gi|268600787|ref|ZP_06134954.1| folC [Neisseria gonorrhoeae PID18]
 gi|268603092|ref|ZP_06137259.1| folC [Neisseria gonorrhoeae PID1]
 gi|268681573|ref|ZP_06148435.1| folC [Neisseria gonorrhoeae PID332]
 gi|268683801|ref|ZP_06150663.1| folC [Neisseria gonorrhoeae SK-92-679]
 gi|268686043|ref|ZP_06152905.1| folC [Neisseria gonorrhoeae SK-93-1035]
 gi|291044404|ref|ZP_06570113.1| FolC protein [Neisseria gonorrhoeae DGI2]
 gi|293399584|ref|ZP_06643737.1| folylpolyglutamate synthase/dihydrofolate synthase [Neisseria
           gonorrhoeae F62]
 gi|59717612|gb|AAW89017.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria gonorrhoeae FA 1090]
 gi|193933276|gb|ACF29100.1| FolC protein [Neisseria gonorrhoeae NCCP11945]
 gi|226512213|gb|EEH61558.1| bifunctional protein folC [Neisseria gonorrhoeae 1291]
 gi|268547703|gb|EEZ43121.1| bifunctional protein folC [Neisseria gonorrhoeae 35/02]
 gi|268550097|gb|EEZ45116.1| bifunctional protein folC [Neisseria gonorrhoeae FA19]
 gi|268582564|gb|EEZ47240.1| folC [Neisseria gonorrhoeae MS11]
 gi|268584918|gb|EEZ49594.1| folC [Neisseria gonorrhoeae PID18]
 gi|268587223|gb|EEZ51899.1| folC [Neisseria gonorrhoeae PID1]
 gi|268621857|gb|EEZ54257.1| folC [Neisseria gonorrhoeae PID332]
 gi|268624085|gb|EEZ56485.1| folC [Neisseria gonorrhoeae SK-92-679]
 gi|268626327|gb|EEZ58727.1| folC [Neisseria gonorrhoeae SK-93-1035]
 gi|291011298|gb|EFE03294.1| FolC protein [Neisseria gonorrhoeae DGI2]
 gi|291610153|gb|EFF39275.1| folylpolyglutamate synthase/dihydrofolate synthase [Neisseria
           gonorrhoeae F62]
 gi|317163736|gb|ADV07277.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 424

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 123/397 (30%), Gaps = 37/397 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +S    R+       ++ V GT+GK SV +++ QI +++G  +  +     +    +
Sbjct: 24  LERVSEVKKRMNLTPQCPVVVVAGTNGKGSVCAYLTQIYKQAGFKTGTLTSPHLLHYNER 83

Query: 159 DNRLTTPSP-----------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---R 198
                 P                   I L        +     +  +     L+     R
Sbjct: 84  IAINAEPVSDDTIIASFERIEAARGEISLTYFEFNALAAVDIFIREQVDVMILEVGLGGR 143

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           LD +    G    +    +D+          ++   +  + +     I   +     ++ 
Sbjct: 144 LDAVNAFDGDCAVVTSVDLDHQA-FLGDTVEQVGFEKAGVFRSGKPAICGQNPAPASLVA 202

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
            A   G ++L V  +    H  +    + + +   S          P P     Y    A
Sbjct: 203 HAEAIGAKLLMV-QRDFEFHAMENIQWNYRFRPQHSDGPARNRNALPFPALRGAYQLSNA 261

Query: 319 AGLCIAIGIDSALVLEHLEK------LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
           A     +      +   +        L   PGRF+ +          +D  H  ++   +
Sbjct: 262 ACALTVLECLDDRLPVDIGAIKRGLLLVENPGRFQVLPGRPL---TVLDVGHNPHAARAL 318

Query: 373 LKNIRTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +N+  +    +   VF    D+D      + +   D  D   +   D PR    + ++A
Sbjct: 319 RRNLINLAYAQKRTAVFSMLSDKDIDG---VSETVKDQFDEWYIAPLDVPRGMTADALKA 375

Query: 431 EIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++    I          +A R A     + D +VV G
Sbjct: 376 KLEQHHIENIQTFAAVRDAYRAAASKAGEDDRIVVFG 412


>gi|89073218|ref|ZP_01159748.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Photobacterium sp. SKA34]
 gi|89050928|gb|EAR56392.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Photobacterium sp. SKA34]
          Length = 419

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 107/385 (27%), Gaps = 26/385 (6%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +  K +   A+ +  K    ++ V GT+GK S  + ++ I   +G           +   
Sbjct: 33  DRVKAVGEKANLI--KPAPCVITVAGTNGKGSTCAMLEAILIEAGYKVGVYSSPHLVRYN 90

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
            +           L  +    +   V  V  + S    +   L  + L      ++    
Sbjct: 91  ERVRINNK----ELDDSEHSKAFASVEAVRGDISLSLFEFGTLAALTLFKTHKVDVVVLE 146

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +       A       +               D+       K       +    G     
Sbjct: 147 VGLGGRLDATNIVDHDVSVITSLAIDHVDWLGDNIDVIGYEKAGIFRSGKPAICGQPHPP 206

Query: 277 I-----------HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                        L +VC   + Q        +   F         +     A  L    
Sbjct: 207 ATVPAHADDIGAELHQVCYQFDYQVADDHWNWQCGAFDLSHLPLPNLPLPNAATALMALG 266

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---- 381
             +  +  E++ +          +   S    I +D AH  +S E   + +  I      
Sbjct: 267 TAELDISEENIIQGLGKAQLPGRMQRVSDYPLIIMDVAHNPHSAEYFAQQLNRIRQKESK 326

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
             I  V     D+D      M K  +D    A +T   PR+   ++I   +     GF +
Sbjct: 327 KHIHAVVAMLHDKDIASTIAMMKDVVDHWYPASLT--GPRAATADEILQYLPTDCMGFDK 384

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVAG 466
                 A   A+   N  D+++V G
Sbjct: 385 PD---AAFDQALTQANCDDMVIVFG 406


>gi|292492028|ref|YP_003527467.1| FolC bifunctional protein [Nitrosococcus halophilus Nc4]
 gi|291580623|gb|ADE15080.1| FolC bifunctional protein [Nitrosococcus halophilus Nc4]
          Length = 435

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/390 (15%), Positives = 109/390 (27%), Gaps = 33/390 (8%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-------- 151
           +  ++       + P  ++ V GT+GK S  + ++ +   +G                  
Sbjct: 28  RASTVLQRMALHQSPFPVVTVAGTNGKGSTVAMLEAVLLAAGYRVGSYTSPHLLRYNERI 87

Query: 152 ---------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RL 199
                         +     T    I L        +        E     L+     RL
Sbjct: 88  KVQGEAVEDDAICQSFARIDTARQEISLTYFEFGTLAAIDIFHQAELDIALLEVGLGGRL 147

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D +  +      +    +D+         A       +     PA+    D         
Sbjct: 148 DAVNALDADVAAITTVDMDHVHLLGHNREAIGFEKAGIFRSHRPAVCGDLDPP----ASV 203

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A +AG  V  +   G+  H +      + Q          +  L  +        AL+  
Sbjct: 204 AAHAGRLVTPLYQIGRDFHYQMNDGRWSWQSGATHYADLPYPALKGIYQHQNAATALMVL 263

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L       S   +        +PGRF+             D AH       + +++   
Sbjct: 264 KLMGERLPVSEAAIRDGLHSVCLPGRFQ---CLQGPVERIFDVAHNPQGARWLAQSLAQR 320

Query: 380 TSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIP 437
             G R   V G   D+D        + A+   DI  V   +  R    + +  ++ +  P
Sbjct: 321 PCGGRTYAVLGMLADKDVAGVVGSLENAI---DIWFVGGLEGERGLSGKALAEQMGNVNP 377

Query: 438 GFIEK-GNRIEAIRTAIEMLNKQDVLVVAG 466
             +       EA R AI+     D ++  G
Sbjct: 378 FAMHIYQTVAEAYRVAIDAAQPGDRVLALG 407


>gi|257784291|ref|YP_003179508.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
 gi|257472798|gb|ACV50917.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
          Length = 489

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 128/415 (30%), Gaps = 42/415 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV S+A    +          I +     K LS  +           +AV GT GK++ 
Sbjct: 92  VIVTSTAIPETNPEVIRARELSIPIWPRA-KMLSYLSR------GRKTIAVAGTHGKTTT 144

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           +S +  +  + G                 D        +          +        + 
Sbjct: 145 SSMIATMLDKLGA----------------DPSFLIGGVVEGYDTNGKNGNGQYFVCEADE 188

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S           +       TN+  DH+D++ + +   N     F  LL KE   +I  D
Sbjct: 189 SD-----GSFMFLNPSVVVITNIEADHLDHYGSLENIENT-FCEFMSLLDKEETVVINGD 242

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPG 308
           + +  E+ +                     ++  A         +  G+    + P  PG
Sbjct: 243 NPHYVELAQSTGRHVVTYGFDPSCDFVCKQEERKAGIENPLTIKTPSGQTISVVLPANPG 302

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NA  A  +   +  D       L +      RF  VG  + G  +  DY H    
Sbjct: 303 KHNVANATAAIAVADTLNFDLEEAAAALSQFKGARRRFTHVGDIN-GITVVDDYGHHPTE 361

Query: 369 LEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE- 426
           +   +     +   R++VVF      R Q         A D  D+  V D     E P  
Sbjct: 362 IAATMSAALPLGFKRVVVVFQPHRYSRTQDLADSFTH-AFDGIDVLRVMDVFSAGELPIP 420

Query: 427 -------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
                    R +  + +P      +R + I   +E ++  D+L+  G G +   I
Sbjct: 421 GVSGKTVSSRVQAANSVPDVRYIPSRRDLIADLLETVHPGDLLITQGAG-DVTQI 474


>gi|325280024|ref|YP_004252566.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
 gi|324311833|gb|ADY32386.1| UDP-N-acetylmuramate--L-alanine ligase [Odoribacter splanchnicus
           DSM 20712]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA  A  L +  G+    +   L     V  RF              DYAH    +E  L
Sbjct: 287 NATAAITLALEAGVQPEEIRRALPDFKGVARRFNIQVYTE-KTIYIDDYAHHPREIEATL 345

Query: 374 KNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KIRA 430
           +++R +   R + V        R +  +    +    LAD  ++ +  P  E P   I A
Sbjct: 346 RSVREMWPDRPVTVVFQPHLYTRTRDFQEDFARSLS-LADRVVLLEIYPARERPIPGITA 404

Query: 431 EIIH 434
           E+I 
Sbjct: 405 EVIR 408


>gi|251797876|ref|YP_003012607.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
 gi|247545502|gb|ACT02521.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
          Length = 473

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/366 (15%), Positives = 115/366 (31%), Gaps = 47/366 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ +TG++GK++  +++ ++   +GL+    G                     +    
Sbjct: 112 APIIGITGSNGKTTTTTWIGKLLGEAGLNPIVAGNIG------------------IPLCE 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +   +     +  E SS  L        +       N+   H+DYH   + Y  A     
Sbjct: 154 AAAEATKDNWIVAELSSFQLK--GTSSFRPRIALLLNIAETHLDYHGGMEDYV-ASKAKL 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                 +  A++  DDA  + +  +               + I ++              
Sbjct: 211 FANQTADDVAVLNWDDATCRAIADQLAAKLLPFSLYVRLDQGICIEPPFERGKDSDKEHM 270

Query: 295 VEGKDFDFLFPL---------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           +  +  D              PG     NAL A   C+A G+    +L  L+    V  R
Sbjct: 271 IVWRKEDGTEQAILPVSALGLPGRHNAGNALAAIAACLAAGVAPEAMLPALQGFRGVEHR 330

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E+ G  +         A    +  M + ++     G  I++   G DR      ++   
Sbjct: 331 LEYAGEFNGVNYYNDSKATNPMATTMSVGSL-----GAPIILIAGGLDRGSDYMELLPVF 385

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-------IRTAIEMLNK 458
              L    +VT    R E   K+    + G+          +A       +R A  +   
Sbjct: 386 RDRL--KGLVTLGQTR-EKLGKVAE--LAGLTNVRLVEPEEDAESTLRRAVREAAGLAEP 440

Query: 459 QDVLVV 464
            D++++
Sbjct: 441 GDIVLL 446


>gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
 gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
          Length = 437

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 108/363 (29%), Gaps = 59/363 (16%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 + I+ +TG++GKS+V + V ++ + +G+     G                   +
Sbjct: 99  FCRAATKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-------------AL 145

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+      +K  A +  N+  DH+D +   + Y  
Sbjct: 146 SLLNEDCEL-------YVLELSSFQLET--TYSLKAAAATILNVTEDHMDRYMDLEDYRQ 196

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK+R     +   +   +  ++                  +      ++  +        
Sbjct: 197 AKLR-----IYHNAKVGVLNNEDRLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMV 251

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +   I            L G     N L A  L  AIGI+   +   L     +  RF+ 
Sbjct: 252 KDEVILP-----CEEATLVGRHNYMNILAATALAQAIGINLDSIRAALRHFKGLDHRFQL 306

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
               +    I    A    S    L  +     G++ ++ G  G          G    +
Sbjct: 307 AHQANGIRWINDSKATNVGSTVAALAGL--YIEGKLHLLLGGDGK---------GANFSE 355

Query: 409 LADIAIVTDDNPRSEDPEKIR-------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           LA++            P  I        A +              +AI      L   D+
Sbjct: 356 LAELI---------NQPHIICYCFGRDGALLAKFSSQSYLFETMEQAIEFLRPTLQSGDM 406

Query: 462 LVV 464
           +++
Sbjct: 407 VLL 409


>gi|116074302|ref|ZP_01471564.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp.
           RS9916]
 gi|116069607|gb|EAU75359.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp.
           RS9916]
          Length = 483

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 81/265 (30%), Gaps = 22/265 (8%)

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                A +      L +      +    +   +++    A         +G       V 
Sbjct: 195 HTDHYADLNDLIGTLKRFGNGCTHLLANHDDPILREHFQAQAWWSVSSAEGVDFAALPVT 254

Query: 284 AIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              +  +      G+       P+PG   + NA  A   C   GI  A + + L +L   
Sbjct: 255 LEGDHTEADFYERGRLIGRISLPMPGLHNLSNATAALAACRMEGIPFAHLQDGLSQLSPP 314

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----------TSGRIIVVFGCGG 392
             RF+F G +  G  I  DYAH  + +   L   + +             R++VVF    
Sbjct: 315 GRRFDFRG-DWEGRLIVDDYAHHPSEVRATLDMAQLMLSSGRSPLPQPPERLLVVFQPHR 373

Query: 393 -DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR- 450
             R Q       +     AD  I+       E P         G        +R   +  
Sbjct: 374 YSRTQEFLDDFARALSS-ADSVILAPIYAAGEAPIDGVNSHTLGDALQRLIPDRSVLVAN 432

Query: 451 -----TAI--EMLNKQDVLVVAGKG 468
                TA+  E    QD+++  G G
Sbjct: 433 SMDQLTALVQEHSRPQDLVLAMGAG 457


>gi|238754433|ref|ZP_04615788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
 gi|238707262|gb|EEP99624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 129/400 (32%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + +V +              ++   I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPALSAAADAGVEIVGDIE--------LFCRENQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V ++ + +G      G                   + L K  + L         +
Sbjct: 118 TVTMLVGEMAKAAGWQVGVGGNIGVP-------------ALTLLKQENQLV-------VL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH D +      + A      +           
Sbjct: 158 ELSSFQLET--TSSLQATAATILNVTEDHTDRYPFGLQQYRAAKLRIYDNAKICVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG         ++          +S E         L 
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWL-------RVSGEKVLNTREMKLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A GI  +  L+ L     +  RF+ V  N     I    A    
Sbjct: 266 GRHNYTNALAALALADAAGIPRSSSLKALTTYAGLAHRFQLVFENHGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   V       E 
Sbjct: 326 STEAALDGL--HIDGTLHLLLGGDGKSADFSGLTRFLQG-------DKVQVYCFGRDGEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A++     L   D++++
Sbjct: 377 LAQLRPEVSQ------LTDTMEQAVKLLAPTLKAGDMVLL 410


>gi|283798343|ref|ZP_06347496.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           M62/1]
 gi|291073926|gb|EFE11290.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           M62/1]
 gi|295092803|emb|CBK78910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 448

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 87/278 (31%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N+  DH+D H+T + Y         +   +    ++ 
Sbjct: 161 EVSSFQLET--IMDFRPNVSAILNITPDHLDRHKTMERY-IEIKEGITKNQKENDVCVLN 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD     + +      C+V+    + K      +       +   +V          L 
Sbjct: 218 YDDPV---LREFGETLKCKVVYFSSREKLKKGLFLDGDQIVYKDGETVTEIVNIHELKLL 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  + + + +    +   +++   V  R EFV                 +
Sbjct: 275 GRHNHENVMAAVAIAMNMDVPMDTIRRVVKRFEAVEHRIEFVTERFGVKYYNDSKGTNPD 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +K +         ++   G D+       +      +  + ++       +  +K
Sbjct: 335 AAMQAIKAMPG-----PTLLIAGGYDKHSEYDEWIESFGGKVRYLVLI------GQTRDK 383

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    +   +  EA++      N  D +++
Sbjct: 384 IAECAKRHGFTDIMYAEDLKEAVQVCASYANAGDNVLL 421


>gi|119773496|ref|YP_926236.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella amazonensis
           SB2B]
 gi|166224726|sp|A1S2G0|MURC_SHEAM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119765996|gb|ABL98566.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella amazonensis
           SB2B]
          Length = 484

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 80/231 (34%), Gaps = 9/231 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D +        +    F   LP    A++  DD   +E++ R 
Sbjct: 185 HLQPMVTVVTNIEADHMDTYGGDFEKLKSTFVDFMHNLPFYGVAVVCVDDPVVRELIPRI 244

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
                                     +  + T+  +GKD       LPG+  V N+L A 
Sbjct: 245 GRQVVTYGFSDDADV--QALNFVQEGHSCRFTVRRKGKDDLSLKVNLPGQHNVLNSLAAI 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
            +     I+   +++ L +   +  RF+ +G  +       +  DY H  + +   +K  
Sbjct: 303 AVATEDDIEDEAIVKALAEFQGIGRRFQHLGKFATPNGEVMLVDDYGHHPSEVLATIKAA 362

Query: 377 RTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           R     + +V+        R +       ++     D  ++ +     E P
Sbjct: 363 RAGWPDKRLVMAYQPHRYTRTRDLYEDFVEVLSQ-VDKLVLLEVYAAGETP 412


>gi|33602559|ref|NP_890119.1| cyanophycin synthetase [Bordetella bronchiseptica RB50]
 gi|33576998|emb|CAE34078.1| cyanophycin synthetase [Bordetella bronchiseptica RB50]
          Length = 879

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 8/127 (6%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           ++F      G  + VD  H  ++L  +L  I    + R   V+  G DR+       G++
Sbjct: 732 WQFTLFERNGACVVVDDVHNPSALRALLAAIEQFPARRRAAVYSAGADRNDDALVEQGRL 791

Query: 406 ALDLADIAIVTDD------NPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLN 457
                D  ++ DD       P  +    +R  +          ++ +   AI   ++ L 
Sbjct: 792 LGTAFDQVVLYDDATVASKRPAGQARGLLRQGLRQSARATAIADEADHARAIARVLDDLR 851

Query: 458 KQDVLVV 464
           + D  ++
Sbjct: 852 EGDFALL 858


>gi|323964816|gb|EGB60283.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           M863]
 gi|327255066|gb|EGE66669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           STEC_7v]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGINMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|261855069|ref|YP_003262352.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
           neapolitanus c2]
 gi|261835538|gb|ACX95305.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halothiobacillus
           neapolitanus c2]
          Length = 471

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 129/414 (31%), Gaps = 54/414 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD-NTRKFLSLFASRLYGKHPENILAVTG 122
           +   AE IV        D    + +    + V  +    L              ++ +TG
Sbjct: 62  LDNVAELIVS--PGIALDLPLIMSARVKQIPVRGDIDLALHA--------SDVPVVLITG 111

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           ++GKS+V + V ++   +G+S+   G   T               + L    +       
Sbjct: 112 SNGKSTVTALVGELLNAAGVSAVVGGNFGTP-------------ALDLLTTDAD------ 152

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             + +E SS  L+     G+            +    H  +         + E  L +  
Sbjct: 153 -VLVLEVSSFQLESTDFSGLAPAQMPRAATVLNISQDHLDRHGTLAHYAAIKETALHQAR 211

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRV---LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
            A++  DD     + +RA          +        +      +   + Q   +     
Sbjct: 212 RAVLNRDDPMVAAMAERASGDVIWFGTAMPTQPSDFGLMTIAGESWLIQAQANATALSIL 271

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRG 355
                 L G     N L A  L  A+  D       +L  L +   +P R + VG  +  
Sbjct: 272 PVQALGLTGRHNQMNVLAALALIQAVVPDVALNDDRLLNVLRQFTGLPHRAQSVGVINGV 331

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    A    +    +  +        +V+   G  + Q   P+   +    A + ++
Sbjct: 332 RFIDDSKATNVGAAVAAILGMPA-----PLVLIAGGQGKGQDFAPLAESLVGRCAGLILM 386

Query: 416 TDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             D       + + AE +   PG         + IEA++ A ++   Q  +++A
Sbjct: 387 GQD-------QAVIAEALQNEPGATWPVRRVHSMIEAVQAAADIAPPQSTVLLA 433


>gi|222099429|ref|YP_002533997.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga neapolitana DSM
           4359]
 gi|254766030|sp|B9K6P8|MURC_THENN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221571819|gb|ACM22631.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga neapolitana DSM
           4359]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD 361
              +PG   + NAL    L  ++G D   VL+ LE+   V  RF            +  D
Sbjct: 258 KLRIPGFHNILNALAVTALFDSLGYDLEEVLKALERFPGVRRRFSISYHDPENNIYVVDD 317

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI--MGKIALDLADIAIVTDDN 419
           YAHT   ++ +L+  + +     +VV        + +R      + AL LAD  IVT+  
Sbjct: 318 YAHTPEEIKNLLQTAKEVFENEKVVVIFQPHRYSRLEREDGNFAR-ALQLADEVIVTEVY 376

Query: 420 PRSED 424
              E+
Sbjct: 377 DAFEE 381


>gi|254450940|ref|ZP_05064377.1| mur ligase family protein [Octadecabacter antarcticus 238]
 gi|198265346|gb|EDY89616.1| mur ligase family protein [Octadecabacter antarcticus 238]
          Length = 556

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 119/384 (30%), Gaps = 27/384 (7%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A      H   +  VTGT+GKS+       I   +G      G +++         L   
Sbjct: 148 AVDWDSLHDVPVGMVTGTNGKSTTVRLTAAIGAAAGKCV---GMSTSDWVRVGGEILDEG 204

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                A A   L    V    +E +  GL +  L      A   TN+  DH+  +     
Sbjct: 205 DYSGPAGARLALRDPRVDLAIIETARGGLMRRGLPVPTADACLLTNVAADHLGTYGIMDV 264

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A  +       +    +I   D           +       + +    + +  +   
Sbjct: 265 TALADAKFQLSDAIRPGGLLILNADDPELVKRAAQFSGDITWFGLEFDRAILDIWIMGGG 324

Query: 286 HNKQQVTISVEGKDFDFLFPLPG------------EFQVYNALVAAGLCIAIGIDSALVL 333
                    +       + P+              +F VYNAL A  L  A+ +    + 
Sbjct: 325 RVAFVEDGQMVLARNGIVEPVLAVADFVPALGGAAKFNVYNALGAICLADALELPINAMA 384

Query: 334 EHLEKLHVVPGRFEFVGTNSR--GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
           + L      P      G   +  G  + +D+AH  + +  +   I++I + R +V+ G  
Sbjct: 385 KGLAGFTDTPDENPGRGNYVKVGGLNLLIDFAHNPHGVHALSSAIKSIPAKRRLVIAGQA 444

Query: 392 GDRDQGKRPIMGKIALDL-ADIAIVTD--DNPR----SEDPEKIRAEII---HGIPGFIE 441
           GDR       M +       D+ +V +  D  R     E    +  E+     G    I 
Sbjct: 445 GDRSDKDTCDMIQAIWTFEPDMVVVAELPDLLRGRQLGEMTTVMVDELKRLGSGHDNIIT 504

Query: 442 KGNRIEAIRTAIEMLNKQDVLVVA 465
                 A+  A+E     D L + 
Sbjct: 505 TDTEYSAVVRAMEWARPGDFLALL 528


>gi|22297617|ref|NP_680864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermosynechococcus elongatus BP-1]
 gi|30316021|sp|Q8DMN8|MURD_THEEB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22293794|dbj|BAC07626.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermosynechococcus
           elongatus BP-1]
          Length = 454

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 92/272 (33%), Gaps = 17/272 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V  E SS+ L+      ++     +T L  DH++ H T  AY   K  L          
Sbjct: 162 WVIAEISSYQLESS--PPLQPEFALWTTLTPDHLERHGTLDAYVATKAHLMNG----AKH 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            I+  DD Y ++ M         + + G       + +   I   Q      +      +
Sbjct: 216 VILNGDDPYLRQHMVNRWPQAWWISTQGAIALPKGIAQGIYIAEDQVW-FQDQPLLPTHI 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG     N L+A       GI +  + + +     VP R E +        I    A
Sbjct: 275 LQMPGRHNQQNFLLAVATAHLAGIPAETIAKGVAGFAGVPHRLERIRQWREVEWINDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++ E+ L+++        +++   G  +    RP +  I    A + ++ +  P+  
Sbjct: 335 TNYDAAEIGLRSVTG-----PVILIAGGQAKKGDDRPWLNLIQEKAAWVLLIGEAAPQF- 388

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
              +    I  G   +        A+  A E+
Sbjct: 389 --AQRLEAI--GFTNYEIMETLDRAVAAAAEL 416


>gi|332557537|ref|ZP_08411859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
 gi|332275249|gb|EGJ20564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
          Length = 465

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 123/415 (29%), Gaps = 58/415 (13%)

Query: 67  GAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAV 120
           G   +V S      Y   +      +   + V ++   F   FA+R +    +   ++ V
Sbjct: 66  GVALLVTSPGIPHLYPAPNPVIARATAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCV 125

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+  + +  I   +G  +   G            R      + L          
Sbjct: 126 TGSNGKSTTTALIHHILSEAGRPTQMAGNIGRGVLDLDPARDGEVVVLEL---------- 175

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                    SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  P 
Sbjct: 176 ---------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPD 224

Query: 241 ESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +   +   +    A    V                +     +        + +    + 
Sbjct: 225 RAVIGVDEPEGLYLAGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWRKGRQMA 284

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
             D   +  LPG     NA  A   C  +G+    +   L     +P R + VG      
Sbjct: 285 SIDLRAMPGLPGAHNHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKGGVR 344

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
            +    A   +S    L+    I            +V          K  ++G  A D A
Sbjct: 345 FVNDSKATNVDSAAKALQAFPKIRWIAGGLGKDGGIVALQPHLGSVVKAYLIGHSARDFA 404

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                TD         +I   +   +    E+                 +V+++A
Sbjct: 405 LQIGATD--------HEICETMERAVARAAEEA-------------QPGEVVLLA 438


>gi|325963641|ref|YP_004241547.1| folylpolyglutamate synthase/dihydrofolate synthase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469728|gb|ADX73413.1| folylpolyglutamate synthase/dihydrofolate synthase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 452

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRP 400
           PGR E V T      I VD AH  + ++     ++   T  R++ V G   ++D      
Sbjct: 305 PGRLEVVRTAPT---IIVDAAHNPDGIKASAAALQEAFTFTRLVPVVGVLKEKDAEDILR 361

Query: 401 IMGKIALDLADIAIVTDDN-PRSEDPEKIRA---EIIHGIPGFIEKGNRIEAIRTAIEML 456
            + +    LA+    T  N PR+    ++     E+  G           +A+  A+E  
Sbjct: 362 QLKESLGGLAEEFCFTQSNSPRAVPAAELAELAVELGFGEDNVHIAEKLDDALEWAVERA 421

Query: 457 NKQD----VLVVAG 466
              D     ++V G
Sbjct: 422 EANDDLSGGVLVTG 435


>gi|290969170|ref|ZP_06560695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780676|gb|EFD93279.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 454

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 85/273 (31%), Gaps = 19/273 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +  +     N+  DH+D H T +AY  AK R+F         A++ 
Sbjct: 166 ELSSFQLEL--TSSLHAVGAVILNITPDHLDRHHTMEAYSAAKERIFSN-QEATDTAVLN 222

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   + +  R         + G   +    K    +         +          L 
Sbjct: 223 YDDDRVRNMQARRKGKVVFFSTQGEVPEGTFYKDHQLMLRHDGTDTLICRDS---DLQLF 279

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N L A  L  A+ I   ++   L++   V  R E V                 +
Sbjct: 280 GAHNIQNCLAAVLLATAVAIPLPVIRSVLKRFRGVEHRLEKVRVLQGVPYYNDSKGTNVD 339

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+           ++   GG           K+A    D  I+       E  ++
Sbjct: 340 ASIKALEAFSGH------LILIAGGHDKMTPLDAFMKLAARKVDTLILV-----GESADR 388

Query: 428 IRAEI-IHGIPGFIEKG-NRIEAIRTAIEMLNK 458
             A     G+      G N  +A+ TA ++   
Sbjct: 389 FAAAAKKAGVRDIRNVGYNMEKAVMTARKLARP 421


>gi|15673139|ref|NP_267313.1| folylpolyglutamate synthase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724120|gb|AAK05255.1|AE006347_13 folylpolyglutamate synthase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406704|gb|ADZ63775.1| folylpolyglutamate synthase [Lactococcus lactis subsp. lactis CV56]
          Length = 427

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 68/212 (32%), Gaps = 8/212 (3%)

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           V+          +          +++    +        ++ +             +   
Sbjct: 207 VIWEVARKNTARVYQFPYDYRTEVEEHEHFNFFSGQEAILDIEKSLVGLHQIENAGMAIE 266

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L            +  V+    +    P R E +G       I +D AH  +++  +L+N
Sbjct: 267 LSLVYASKVGIELTEDVIRSGIREAFWPARMEKLGEKPL---ILLDGAHNVHAMNRLLEN 323

Query: 376 IR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +       +I ++F     +D  +   M +     + + + T D P++ +    +     
Sbjct: 324 LSSEFPDKKITIIFSAITTKDISQMIKMLQTV-KNSHLILTTFDYPKALNLGDFQRLEEE 382

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           G        +   A+  A + L + D+L+V G
Sbjct: 383 G---VELAPSWELALVRAQKNLAEDDLLLVTG 411


>gi|194290727|ref|YP_002006634.1| udp-N-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
 gi|193224562|emb|CAQ70573.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 462

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 120/358 (33%), Gaps = 29/358 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +LAV GT GK++  S +  I + +G +   +       +F    R+T      +    
Sbjct: 103 KWVLAVAGTHGKTTTTSMLAWILEDAGYNPGFL-VGGVPQNFGISARVTESDFFVIEADE 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +                 + +    +       NL  DH D      A    +    
Sbjct: 162 YDTAFFD-------------KRSKFVHYRPRTAILNNLEYDHADIFPDLAAIE-TQFHHL 207

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              +P +   ++   +     V++R   +      VG   +    +   A          
Sbjct: 208 VRTVPGQGRIVVNGVEESLARVLERGCWSEVEQFGVGDWRESDAARTPAAPGKDAFDVWF 267

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +      ++ L G     NAL A G    +G+ +A  +E L +   V  R E  G    
Sbjct: 268 GDAVAGTVVWDLQGTHNRMNALAAIGAARHVGVPAAQAIESLSRFANVKRRMEVRGVA-G 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGK---IALDLA 410
           G  +Y D+AH   +++  L  +R      RI+ V     +    K  +M      +L+ A
Sbjct: 327 GVTVYDDFAHHPTAIQTTLDGLRRRVGNARILAVLEPRSN--TMKLGVMKAQLPASLEQA 384

Query: 411 DIAIV----TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D+          +    D  +  A +      F + G  ++A+R A       D ++V
Sbjct: 385 DLVFGYGAPAGKDALGWDLAEALAPLGATATAFQDLGTLVQAVRAA---AQPGDHVLV 439


>gi|331268329|ref|YP_004394821.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
 gi|329124879|gb|AEB74824.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
          Length = 458

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 142/432 (32%), Gaps = 65/432 (15%)

Query: 64  IAQGAEAIVVSSAYSLQDF-------------SATIRSNTPILVVDNTRKFLSLFASRLY 110
           I +GAE  +  +  +++D                 +R++   +   +  +FL        
Sbjct: 52  IEKGAEIYIGHNKDNIKDVDLVVYTAAIPDSNPELVRAHELQIPTMDRAEFLGHVMQGH- 110

Query: 111 GKHPENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
               +  +A++GT GK++  S +  I    +   +  +G    + +       +      
Sbjct: 111 ----KYNIAISGTHGKTTTTSMLSHITLSANLDPTILVGGNLDVINGNVRVGNSDYFVTE 166

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             +  +                               G   N+  DH+D+++      N 
Sbjct: 167 ACEYKASFLKF----------------------YPYIGIILNIEADHLDFYKDINDIQNT 204

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F +L+PK+   I+ ADD     V K      C V++ G     +  K +   + + 
Sbjct: 205 -FLKFAKLIPKDGFLIVNADDERCLAVSKEV---DCNVMTFGINNGEVRAKNIEFNNGRP 260

Query: 290 QVTISVEG-KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
              +     K F     +PG   + ++L +    +++ +D+  ++E L   +    RFE 
Sbjct: 261 TFDVYRNDTKLFSLTLNVPGNHNILDSLASISASLSLNVDTDSIIEGLSTFYGAHRRFEI 320

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
            G    G  +  DYAH    ++  L   +     RII +F       +    +    A  
Sbjct: 321 KG-ELNGITVVDDYAHHPTEIKAALNAAKNFPHNRIICIF-QPHTYSRTI-SLFDDFADS 377

Query: 409 L--ADIAIVTDDNPRSEDPEKI---------RAEIIHGIPGFIEKGNRIEAI-RTAIEML 456
              AD  I+ D     E    I           E               EAI     + L
Sbjct: 378 FFNADTLILADIYAAREKDTGIVSSDMLGNKIREKGVNCKNLHSF----EAITEFLRQEL 433

Query: 457 NKQDVLVVAGKG 468
            + D+L+  G G
Sbjct: 434 KEGDLLITVGAG 445


>gi|317969026|ref|ZP_07970416.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CB0205]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 115/367 (31%), Gaps = 37/367 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              ++          + +TGT+GK++V   V  + ++ G+ +   G              
Sbjct: 98  GEISTAWEASGSTPWIGITGTNGKTTVTHLVAHLLKQGGIDAPMCGNVGH---------- 147

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              S   LA             + VE SS+ ++      +    G +T L  DH++ H T
Sbjct: 148 ---SAAELALERFSDGQTRPQALVVELSSYQIES--APELAPAIGLWTTLTPDHLERHGT 202

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
            + Y        +  L + S   +   D                + +   +         
Sbjct: 203 LENYR-----AIKRGLLERSAIQVLNGDDPDLCAHAATWPNARWITASSREAALAKGIDP 257

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  QV              +PG     N L+A  + + +G+    +   L     V
Sbjct: 258 WLWIEGNQVMERSGALLPANALAMPGAHNRQNMLMALAVGLELGLSGPAMEAALRAFPGV 317

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E + +      I    A   ++ E+ L+ +         +V   GG+  QG     
Sbjct: 318 PHRLELIRSLDGVDWINDSKATNYDAAEVALRAVEG------PLVALAGGEAKQGDASAW 371

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGN-RIEAIRTAIEMLNKQ 459
                  A   ++          +    E++   G  G I+  +   EA+  A ++  ++
Sbjct: 372 IAALQRSAKAVVL------FGAAQSHFQELLLSGGYTGVIQCCDALPEAVAAARQLSQRE 425

Query: 460 DV--LVV 464
               +++
Sbjct: 426 HCRAVLL 432


>gi|309812642|ref|ZP_07706386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
 gi|308433337|gb|EFP57225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
          Length = 501

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 132/426 (30%), Gaps = 56/426 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSS--AYSLQDFSATIRSNTPIL-VVDNTRKFLSLFASRLYGK 112
           G   +  A   G   IV S   A S       +    P+   V+       L       +
Sbjct: 85  GAEHMDAAPE-GTHLIVTSPGVAPSAPIMQDAMSRGIPVWGEVE-------LAWRMRPRE 136

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                L +TGT+GK++  + ++ + +  GL +   G                        
Sbjct: 137 GGAPWLTITGTNGKTTAVTMLESMLKAQGLRAVAAGNVGMPLLE---------------- 180

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L  Q    ++VE SS  L   R   +   A    N+  DHID+H + + Y   K R
Sbjct: 181 --AVLHPQPYDVIAVELSSFQLHWSRT--VSPYASCCLNVAPDHIDWHGSYEEYKRQKGR 236

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-----HLKKVCAIHN 287
           ++E         +         E  +          ++G  G  +      +    A   
Sbjct: 237 VYERTQVACVYNVDDPATEAMVEDAEVVDGCRAIGFTLGTPGPSMVGIVDDVLADRAFIA 296

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +++ + +      D          V +AL AA L  + G+  A V + L      P R  
Sbjct: 297 ERRTSAAELAILSDLGPNASAPHYVADALAAAALARSYGVTLAAVRQGLVDYTPQPHRMA 356

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V        +    A    + +  L+          +V    G  +      ++   A 
Sbjct: 357 SVAEVGGVRWVDDSKATNPPAAQASLQAFDP------VVWIAGGLLKGAEVDDLVRANAS 410

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEML----NKQ 459
            L    ++        D   I   +    P      IE  +  EA+R A+        + 
Sbjct: 411 RLRAAVLL------GRDRGIIADALAAHAPQVPVTVIETSDADEAMREAVAAANAAAQRG 464

Query: 460 DVLVVA 465
           D +++A
Sbjct: 465 DTVLLA 470


>gi|163741576|ref|ZP_02148967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385310|gb|EDQ09688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
          Length = 465

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 125/412 (30%), Gaps = 46/412 (11%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD---NTRKFLSLFASRLYGKHPE--NI 117
           A    A  IV      L      +     +  V    +   F    A+R + +  +   I
Sbjct: 63  AFDDIASLIVSPGIPHLYPKPNPVIHAALVAGVPVDNDIGLFFRSVATRGWERFDQAPRI 122

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GKS+  + +  I Q +G  S   G                   + L       
Sbjct: 123 VAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDPPGSGGIVVLEL------- 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                       SS+  D  R   +      FTNL  DH+D H     YF AK RLF E 
Sbjct: 176 ------------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEG 221

Query: 238 LPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            P  +   +  D+    A                 S    G    +       ++ +   
Sbjct: 222 GPDRAIIGVDEDEGLYLAGQLSEAASDDRVIRISASRKLTGPGWQVFARKGFLSEYRKGR 281

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D   +  LPG     NA  A     A+G+   L+ + L     +P R + + T+ 
Sbjct: 282 QAASIDLRQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRSQTIATHE 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A   +S    L     I   R I     G ++D G   + G+         
Sbjct: 342 GVRYVNDSKATNLDSAVKALSAFDNI---RWIC---GGLEKDGGLEALRGQTGKVRKAYV 395

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I         +      ++              EA+  A       D +++A
Sbjct: 396 I-------GREAAGFAMQLDV---EAEVCITMAEAVARASAEAEAGDTVLLA 437


>gi|24111533|ref|NP_706043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 301]
 gi|62900692|sp|Q83MF9|MURD_SHIFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24050291|gb|AAN41750.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 301]
 gi|281599450|gb|ADA72434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2002017]
 gi|332762278|gb|EGJ92545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2747-71]
 gi|332762649|gb|EGJ92914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           4343-70]
 gi|332764934|gb|EGJ95162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-671]
 gi|332768878|gb|EGJ99057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2930-71]
 gi|333009070|gb|EGK28526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-218]
 gi|333022251|gb|EGK41489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-304]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 139/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NALVA  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G +     P+          +  +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-KSADFSPL----------VRYLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|289434885|ref|YP_003464757.1| hypothetical protein lse_1520 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171129|emb|CBH27671.1| murC [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 113/361 (31%), Gaps = 46/361 (12%)

Query: 59  FIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           F    I  G   I  ++   + ++    +    P++      KFL               
Sbjct: 53  FSADNIKSGLTIIAGNAFPDTHEEIERAMELGIPVIR---YHKFLGQLIDGYTS------ 103

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TG+ GK+S    +  +      +S+ IG  +   +   D        +   +   + 
Sbjct: 104 IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKGADY-----FALEACEYQRHF 158

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            +   T+  +                      TN+  DH DY ++    FNA   L ++ 
Sbjct: 159 LAYKPTYAIM----------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ- 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A+    D     + K   +        G + +F     +      +      + 
Sbjct: 196 ---VKKAVFALGDDVE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTRFDVYHRDE 250

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               F  P  G+  V NAL    LC   G+    V   L+    V  RF           
Sbjct: 251 FLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSITDKG--KQV 308

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVT 416
           +  DYAH  + +   +   R     + IV         + +  + G   +L+LAD   + 
Sbjct: 309 LVDDYAHHPSEIRATVNAARQKYPDKKIVAVFQPHTFTRTRTFLQGFADSLNLADEVYLC 368

Query: 417 D 417
           D
Sbjct: 369 D 369


>gi|170681706|ref|YP_001742210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SMS-3-5]
 gi|218698511|ref|YP_002406140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI39]
 gi|218703348|ref|YP_002410867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UMN026]
 gi|293403160|ref|ZP_06647257.1| murD [Escherichia coli FVEC1412]
 gi|298378690|ref|ZP_06988574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300900881|ref|ZP_07119018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300938483|ref|ZP_07153223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331661462|ref|ZP_08362386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331681473|ref|ZP_08382110.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
 gi|170519424|gb|ACB17602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           SMS-3-5]
 gi|218368497|emb|CAR16232.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI39]
 gi|218430445|emb|CAR11311.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           UMN026]
 gi|291430075|gb|EFF03089.1| murD [Escherichia coli FVEC1412]
 gi|298281024|gb|EFI22525.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300355645|gb|EFJ71515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300456552|gb|EFK20045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331061377|gb|EGI33340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331081694|gb|EGI52855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 135/398 (33%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKICVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|297184178|gb|ADI20297.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 420

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 94/370 (25%), Gaps = 19/370 (5%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+L+ +  +       + + GT+GK S A  +    +  GL               +   
Sbjct: 55  LALWEALDFPGRSIPTIHIAGTNGKGSTAHVIASGMKEMGLRVGVFSSPHLFDFRERAKI 114

Query: 162 LT--TPSPIYLAKALSYLSSQGVTHVSVE--ASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
            T   P         S          S     +   L     + +  I       GR   
Sbjct: 115 GTELVPEDYVRQFVTSNKDFFTAGGFSFFELTTMLALSWFEQEAVDWIILETGMGGRLDA 174

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                 +          +      +     A +             G +           
Sbjct: 175 TNICLPELTIITN-IGLDHTQWLGNTLGAIAAEKAGIMKEGVPVIIGEKHPDTKEVFTRY 233

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                  +       I  + +    +F         +   A  L +    + AL      
Sbjct: 234 ARTNNAPLFWSAPFDIPTDLRGKYQVFN--------SNTAATALSLLFPEERALWELGFS 285

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           ++    G            +   D  H  ++L+ I+K    + +     V G   D++  
Sbjct: 286 RVVQNTGLQGRWQQIGSNPKTICDTGHNEHALKHIVKQAHEVANHVHW-VLGMASDKEHA 344

Query: 398 KRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           K            D    T  +  R+ D   +    +       E  +  EA+  AI+  
Sbjct: 345 K----ALNLFPKTDSFYWTSSSSTRTIDSAALAEIALTSGYHGTEYSSVQEALNAAIKHA 400

Query: 457 NKQDVLVVAG 466
            + D++ V G
Sbjct: 401 KEDDLIFVGG 410


>gi|139437199|ref|ZP_01771359.1| Hypothetical protein COLAER_00338 [Collinsella aerofaciens ATCC
           25986]
 gi|133776846|gb|EBA40666.1| Hypothetical protein COLAER_00338 [Collinsella aerofaciens ATCC
           25986]
          Length = 468

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/360 (18%), Positives = 118/360 (32%), Gaps = 44/360 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P+N +A+TGT+GK++  S    + + +G +S  +G          D R            
Sbjct: 108 PDNWIAITGTNGKTTTTSLTDFLLKAAGEASVAVGNIGEPPVNEIDGR------------ 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                         E SS+ +       +        N+  DH+ +H++ + Y  AK++L
Sbjct: 156 ------AHNEWFVAELSSYQIAT--TTELHPRVAVLLNITPDHLGWHKSHKNYALAKIKL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F+ ++  +   +   D    +                  + +      V       ++  
Sbjct: 208 FDNMVDDDLVVVDVEDAGIHEFDEYIYTPGRRICKVAFDEPEGEDAAFVRDGKMIVRLKG 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                       + G   V NAL AA   +A+G D   V   L     +  R E  G   
Sbjct: 268 VETPLIATSELKISGHHNVINALCAATAALAVGADVDGVCRGLASFQPLEHRVEPCGEID 327

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A  ++++E  L             V    G  D+G           L D A
Sbjct: 328 GVRYVNDSKATNTDAVEKALTAFPDDD------VILLLGGHDKG---------TPLTDFA 372

Query: 414 IVTDDNPRS--------EDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            V  DN RS        E       E  + G     +  +  +A+  A  + ++ DV+++
Sbjct: 373 RVVMDNVRSVVCFGDARERFTAAMDEADVDGDVDIAQADDLRDAVDVARSLSSRGDVILL 432


>gi|65321239|ref|ZP_00394198.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus
           anthracis str. A2012]
          Length = 323

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 54/158 (34%), Gaps = 11/158 (6%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + N L A  +   +G+ +  +   L++   V  R E+V T +         A   
Sbjct: 149 PGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRLEYVTTINNRKFYNDSKATNM 208

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + E  L            V+   G DR      ++       A   IVT        P+
Sbjct: 209 LATEKALSAFTQ-----PTVLLAGGLDRGNEFDDLIPYFKNVKA---IVTFGQTA---PK 257

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +RA    G+          EA+  A       DV+++
Sbjct: 258 LVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 295


>gi|293604151|ref|ZP_06686559.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817376|gb|EFF76449.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 871

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 10/161 (6%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEM 371
           N L A G   A+ I   L+   +E   +      ++F      G  + VD  H +++L  
Sbjct: 690 NVLAAVGAAWALDIPVELIRAGIETFDIDQADAPWQFTLFERNGSTVVVDDVHNASALRP 749

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD------NPRSEDP 425
           ++  I    + R   V+  G DR        G++  D  D  ++ DD       P  +  
Sbjct: 750 LIAAIDQFPAARRAAVYSAGADRRDADLIEQGRLLGDAFDRVVLYDDKTVQSKRPEGQAR 809

Query: 426 EKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +R  +  G  +    ++ +  +AI + +  +   D +++
Sbjct: 810 ALLRQGLSQGSRVKDIQDEPDHGKAIESVLNGIAADDFVLL 850


>gi|270263960|ref|ZP_06192228.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
 gi|270042153|gb|EFA15249.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera 4Rx13]
          Length = 491

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 140/424 (33%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF- 302
           A++  DD   +E++ R                   ++    +  +   T+S + K     
Sbjct: 227 AVMCVDDPVVRELLPRVGRHITTYGFSEDADV--RIESYRQVGPQGHFTLSRQDKPLMTV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------ 356
               PG     NA  A  +    GID   +L  L        RF+F+G            
Sbjct: 285 TLNAPGRHNALNAAAAVAVATEEGIDDEDILRALAGFQGTGRRFDFLGEFPLEPVNGKSG 344

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DI 412
              +  DY H    +++ LK  R     +  +V      R    R +    A  L+  D+
Sbjct: 345 TAMLVDDYGHHPTEVDVTLKAARAGWPDKR-LVMIFQPHRYTRTRDLYDDFANVLSQVDV 403

Query: 413 AIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++ D     E      D   +   I   G    I   +      T  ++L  +D+++V 
Sbjct: 404 LLMLDVYAAGETAIPGADSRSLCRTIRSRGKLDPILVSDADIVPETLAQLLQAEDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|87122626|ref|ZP_01078503.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
 gi|86162084|gb|EAQ63372.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MED121]
          Length = 478

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 117/366 (31%), Gaps = 40/366 (10%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  IVVS+A ++++          I +V   R+   L+      +G      +AV GT G
Sbjct: 76  AHVIVVSTAINIENPEIKWGKENRIPIV---RRAEMLAELMRYRHG------IAVAGTHG 126

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +             T    +F    RLT          L           
Sbjct: 127 KTTTTSLMASVLAA----------TGDAPTFVIGGRLT---SAGTNAQLGSSKYLVAEAD 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             +AS   L  H        +   TN+  DH+D +             F   LP    A+
Sbjct: 174 ESDASFLHLQPH--------SAIVTNIDEDHMDTYGGDFEKVKHTFVEFLHNLPFYGMAV 225

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   +E++ +                F     V      + V      +      P
Sbjct: 226 LCVDDENVREILPQVSRPILTYGIEHE-ADFYATDLVQTGRYCEFVAHRPNLEPIRIRLP 284

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT----NSRGGRIYVD 361
           +PG+  V NAL    +   +G+++  +   L     V  RF+         S       D
Sbjct: 285 MPGKHNVLNALATIAVATDLGVEAVAIQAGLMGFEGVGRRFQEQSPLALPKSGEVMFIDD 344

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDN 419
           Y H    +E+ +  IR     + +V+        R +       K+     D+ ++ D  
Sbjct: 345 YGHHPREVEVTIDAIRDGWPDKRLVMIYQPHRFSRTRDLYEDFVKVLSK-VDVLLLLDVY 403

Query: 420 PRSEDP 425
              E P
Sbjct: 404 AAGEAP 409


>gi|325496024|gb|EGC93883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ECD227]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 136/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGINMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HIDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|170017318|ref|YP_001728237.1| folylpolyglutamate synthase [Leuconostoc citreum KM20]
 gi|169804175|gb|ACA82793.1| Folylpolyglutamate synthase [Leuconostoc citreum KM20]
          Length = 423

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/394 (14%), Positives = 125/394 (31%), Gaps = 35/394 (8%)

Query: 101 FLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           FL    + L +      I+ + GT+GK S  + +++I   SG +       +  +   Q 
Sbjct: 24  FLCEVMTWLSHPDKDIRIIQIAGTNGKGSTGAMLREIILASGETVGHFTSPAVFNDCEQI 83

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASS---------HGLDQHRLDGIKLIAGSFT 210
                              +  +T  ++  ++           L   R + +        
Sbjct: 84  WLNGNFVSQEAWVTAYEDLNHQLTQHNLTIANLSYFEVWTIVALLIFRQNKVTYAIIEAG 143

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
             GRD   +  +            +            A +            +    +S 
Sbjct: 144 LGGRDDATHMISYGDIVAYTEIGLDHQNILGHNIESIAQNKADLITGGTLVVSDLEQVSA 203

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV----------------YN 314
             +      K+  A   +Q  TIS++ +  + L  +  + +                 + 
Sbjct: 204 VTKILKRTAKREGAHWFEQHDTISIQSETVNGLCLVINQQRYQLGLNGAFQRRNAAVVWQ 263

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
            L A  L   +  + A   + L     + GR +    N     +  D AH  +++  +L+
Sbjct: 264 VLSALELRYQVSFNIAARQKGLAN-SFMVGRMQVDTINR----LVWDGAHNIDAVRALLE 318

Query: 375 NIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
            ++      R I++ G   D++     ++  +    ++I  VT DNPR+   E +   I 
Sbjct: 319 TVKVWQLSTRPILILGVLSDKNYD--DMLAYLLPVFSEIIAVTPDNPRALAAEDLADTIK 376

Query: 434 HGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAG 466
              P          EA+  A +   K   +++ G
Sbjct: 377 KLAPNMTVTPVASQEALALAQQKQGKNQYIMITG 410


>gi|148265987|ref|YP_001232693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
 gi|189082910|sp|A5G8K2|MURD_GEOUR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146399487|gb|ABQ28120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
          Length = 453

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 131/396 (33%), Gaps = 45/396 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +VVS    +      +       V+          A+R        ++A+TGT+GK+
Sbjct: 69  ADLVVVSPGVPMDIKPLLLAKAQRRTVISEI-----ELAARFLTAP---LVAITGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   +I    G  +F  G             +T+   +                V V
Sbjct: 121 TTTTLTGEIFAACGFKTFVGGNIGNPLIEL----VTSGEAVD--------------RVVV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +       N+  DH+D + T Q Y +AK+R+FE     +  A++ 
Sbjct: 163 ELSSFQLE--GIIDFRPQVAVLLNITEDHLDRYATYQEYIDAKLRIFENQTSAD-YAVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD        +               + I  +    ++  +          F       
Sbjct: 220 MDDPLVAAYAGKMKARVVPTSQRQELAQGIFYRNGSIVYRWEGREELFATASFRLK---- 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + A    + +G D+   L  LE    +P R EFV   +              
Sbjct: 276 GVHNIDNIMAALASTLLMGCDAGQALAALEAFAGLPHRMEFVREVNGVAWYEDSKGTNVG 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S+   L++  +      I +   G D+     P+ G +   +  + ++       E  E+
Sbjct: 336 SVVKSLESFDS-----GITLIAGGKDKGGEYTPLAGLVKERVGHLILI------GEAKER 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +   +   +          +A+  A  + +   V++
Sbjct: 385 MCNALGS-LTDTHLADTLEDAVALAHRLTSPGGVVL 419


>gi|88811837|ref|ZP_01127090.1| UDP-N-acetylmuramate--alanine ligase [Nitrococcus mobilis Nb-231]
 gi|88790721|gb|EAR21835.1| UDP-N-acetylmuramate--alanine ligase [Nitrococcus mobilis Nb-231]
          Length = 482

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 139/412 (33%), Gaps = 44/412 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+V SSA    +          I VV    + L+      YG      +AV GT GK++ 
Sbjct: 82  AVVTSSAVGPDNSEVVAARQHRIPVVPRA-EMLAELMRFRYG------VAVAGTHGKTTT 134

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S +  +    G   +F IG    ++S A   RL           ++       + + ++
Sbjct: 135 TSLIASLLAEDGLDPTFVIG--GRLNSVASHARLGAG-----HYLVAEADESDASFLYLQ 187

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                           +    TN+  DH+  +Q   A   A    F   LP    A++  
Sbjct: 188 ---------------PMIAVVTNIDADHLGAYQGDFARLRASFLEFLHHLPFYGLAVLCI 232

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   + ++ R                         +     V +  E   F     LPG
Sbjct: 233 DDPEVRALLDRTTRPARSYGYSADADVRATAVVQRGLRTSFAVRVGDEA-PFSVDLNLPG 291

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHT 365
                NAL A  + + +G+  A ++  L +   +  RF+  G  + GG       DYAH 
Sbjct: 292 RHNALNALAAIAVALELGVSRAAIVRGLAEFAGIDRRFQPCGVLALGGGRVSLVDDYAHH 351

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTD------ 417
              +  +L+  R    GR IVV        + +       ++    AD  ++T+      
Sbjct: 352 PREIAAVLRAAREGWPGRRIVVAFQPHRYSRTRDLFEDFARVLSA-ADALLLTEVYAAGE 410

Query: 418 DNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                 D   +   I + G    +   +  E I    +++   D+L+  G G
Sbjct: 411 AAIAGADGRSLCRAIRMRGQIDPVFALSVEELIELVPDVVRDDDLLITLGAG 462


>gi|189502458|ref|YP_001958175.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189497899|gb|ACE06446.1| hypothetical protein Aasi_1103 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 467

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 10/239 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       T +  DH+D ++ Q  +     +    L  +    + +       +      
Sbjct: 181 LHPDIAIITTVDPDHLDIYKDQDGFEEGFKQFLSRLPKQGIAILHHDVAKRLIDDESYPT 240

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
            A     ++           +          IS +    D   P+PG   + NAL     
Sbjct: 241 QAQVIQYALKDSPICADNIYISETGRFCFDYISEKFVIRDIQLPVPGYHNIENALAVITA 300

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           C+ IGI   ++ E +     +  RF+ +   +       DY H    +  +L  IR +  
Sbjct: 301 CLHIGIAPEIIREAIHTFQGIARRFDLIIQRN-DLVFIDDYGHHPVEITALLTTIRKLYP 359

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP------EKIRAEI 432
            + + V        + K   + +IA    LAD  ++ D     E P      E I   I
Sbjct: 360 NKKVTVIFRPNQYSRTK-DFLQEIAQSLSLADCVLILDIYSDREVPIEGINSEAILQHI 417


>gi|37520857|ref|NP_924234.1| folyl-polyglutamate synthetase [Gloeobacter violaceus PCC 7421]
 gi|35211852|dbj|BAC89229.1| folyl-polyglutamate synthetase [Gloeobacter violaceus PCC 7421]
          Length = 385

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    +              +   +PGR E +G       +++D AH    L  +   +
Sbjct: 210 AALAGALFEVCRGTPAPRLPPQAVRLPGRLEPMGVQQW---VWLDGAHNPEKLAYL---V 263

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEII 433
           R +     +V+FG    +    RP M KI   LA   ++       +   D  ++  +  
Sbjct: 264 RQLHGRPAVVLFGALAGK--SHRP-MLKILSRLARTLVLCPIEVPGKLPTDLAELTRQAQ 320

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                     N   A+  A+       ++VV G
Sbjct: 321 EWFERVEPAPNPEAALAFALHRRQPDQIVVVTG 353


>gi|317401779|gb|EFV82395.1| cyanophycin synthetase [Achromobacter xylosoxidans C54]
          Length = 871

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 10/161 (6%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGR--FEFVGTNSRGGRIYVDYAHTSNSLEM 371
           N L A G   A+ I   L+   +E   +      ++F      G  + VD  H +++L  
Sbjct: 690 NVLAAVGAAWALDIPVELIRAGIETFDIDQADAPWQFTLFERNGSTVVVDDVHNASALRP 749

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI------VTDDNPRSEDP 425
           ++  I    S     V+  G DR        G++  D  D  +      VT   P  +  
Sbjct: 750 LIAAIDQFPSTTRAAVYSAGADRRDADLIEQGRLLGDAFDRVVLYDDATVTSKRPAGQAR 809

Query: 426 EKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +R  +  G  +   I++ +  +AI + +  +   D +++
Sbjct: 810 ALLRQGLEQGSRVKQIIDEPDHGKAIESQLSGIAAGDFVLL 850


>gi|238759062|ref|ZP_04620232.1| Folylpolyglutamate synthase [Yersinia aldovae ATCC 35236]
 gi|238702739|gb|EEP95286.1| Folylpolyglutamate synthase [Yersinia aldovae ATCC 35236]
          Length = 422

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHL 336
                    ++Q+ + S +  D  +         + NA  A  +    G+     V+   
Sbjct: 227 WQFSQQEPLSQQKNSWSWQCVDHQWANLPLPNVPLANAATALAVLHYSGLPLSDEVIRQG 286

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRD 395
                +PGRF+ V        + +D AH  ++   +   +  +   G++  V G   D+D
Sbjct: 287 LMAASLPGRFQIVSEQPL---LILDVAHNPHAARYLTDKLAHLPKRGKVRAVVGMLSDKD 343

Query: 396 QGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
            G     G +A   +  D       + PR    +++   ++       +  +   A R A
Sbjct: 344 IG-----GTLACLSEQVDEWYCAPLEGPRGATAQQLADHLMV----SRQFSDVATAWRQA 394

Query: 453 IEMLNKQDVLVVAG 466
           ++   +QDV++V G
Sbjct: 395 MQDSERQDVVIVCG 408


>gi|198275910|ref|ZP_03208441.1| hypothetical protein BACPLE_02093 [Bacteroides plebeius DSM 17135]
 gi|198271539|gb|EDY95809.1| hypothetical protein BACPLE_02093 [Bacteroides plebeius DSM 17135]
          Length = 428

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/383 (13%), Positives = 102/383 (26%), Gaps = 30/383 (7%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             +     + + V GT+GK S +  +  I Q +G  +        +    +     TP  
Sbjct: 39  FHHPHRKFHTIHVAGTNGKGSCSHTLAAILQAAGYKTGLYTSPHLVDFRERIRVNGTPVS 98

Query: 168 IY--LAKALSYLSSQGVTHVSVEASSHGLDQ------------------HRLDG---IKL 204
               +     + +     H S    +  +                     RLD    I+ 
Sbjct: 99  QEFVIDFVEKHRAFFEPLHPSFFELTTAMAFTYFAEQQVDVAVIEVGLGGRLDCTNIIQP 158

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+  DH+ +         ++     +        I             +A   G
Sbjct: 159 DLCVITNISFDHVQFLGNTLEKIASEKAGIIK--EGTPVVIGETTPETRPVFQAKATAVG 216

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             ++    +   IH  +  A+H   Q     + +                + +       
Sbjct: 217 APIVFAEDEHLLIHATRNEAMHYVYQTADYPQLEGELGGLCQLKNTNTLLSAIRQLRHAG 276

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
             +    V E    +  + G             I  D  H +  ++ I + +R  T   +
Sbjct: 277 YNLSEENVREGFLHVCELTGLMGRWQKLGEKPTIICDTGHNTGGMQYITEQLRHQTYKTL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-G 443
            +V G   D+D      M             T  + +   P +    +        E   
Sbjct: 337 HIVIGMVNDKDVSGVLSMLPKDARY----YFTQASVKRALPYQQMKALAETFNLHGEAYP 392

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +  EA   A E     D + V G
Sbjct: 393 HVKEAFEAAKEQAQPDDFIFVGG 415


>gi|110804152|ref|YP_687672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 5 str. 8401]
 gi|110613700|gb|ABF02367.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri 5
           str. 8401]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 138/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NALVA  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|333010584|gb|EGK30017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           VA-6]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|293408179|ref|ZP_06652019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
 gi|291472430|gb|EFF14912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|220920537|ref|YP_002495838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium nodulans ORS 2060]
 gi|219945143|gb|ACL55535.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           nodulans ORS 2060]
          Length = 460

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 78/269 (28%), Gaps = 26/269 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  + + +G      G   T                    
Sbjct: 112 PDAPFVAITGTNGKSTTTALIAHVLRETGHDVQMGGNIGTAILSLAPPAPG--------- 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         +E SS  +D      +K   G   N+  DH+D H        A   
Sbjct: 163 ----------RVHVIEMSSFQIDL--TPTLKPSVGVLLNITPDHLDRHGD-----MANYA 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
             +E L   S   +   D      +   H      + VG       +     +       
Sbjct: 206 GIKERLIASSDHAVIGVDDDYTRAIAARHAGPLTRVHVGETAPGPGILARHGVLIDGCTE 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                 D   +  L G     NA +A  +  A+G+      + L     +P R E VG  
Sbjct: 266 PPSPVADLTGIPSLRGSHNWQNAGIAYAVARALGVAPDAFAQALRSFPGLPHRMEEVGRR 325

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                I    A  ++S E  L     +  
Sbjct: 326 GSVLFINDSKATNADSTEKALAAFPRVHW 354


>gi|16128081|ref|NP_414630.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89106971|ref|AP_000751.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157159559|ref|YP_001456877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli HS]
 gi|170021556|ref|YP_001726510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ATCC 8739]
 gi|170079727|ref|YP_001729047.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492751|ref|ZP_03000021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194439413|ref|ZP_03071490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|238899489|ref|YP_002925285.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|253774882|ref|YP_003037713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037503|ref|ZP_04871580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|254160210|ref|YP_003043318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli B str. REL606]
 gi|256025402|ref|ZP_05439267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           sp. 4_1_40B]
 gi|297519210|ref|ZP_06937596.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli OP50]
 gi|300931785|ref|ZP_07147085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|300949894|ref|ZP_07163857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300955954|ref|ZP_07168287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|301028571|ref|ZP_07191801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|301646400|ref|ZP_07246282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|307136689|ref|ZP_07496045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli H736]
 gi|312970182|ref|ZP_07784364.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|331640541|ref|ZP_08341689.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331650985|ref|ZP_08352013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|127537|sp|P14900|MURD_ECOLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|40856|emb|CAA38865.1| UDP-MurNac-L-Ala-D-Glu (MurD) (AA 1-438) [Escherichia coli]
 gi|42060|emb|CAA35933.1| unnamed protein product [Escherichia coli]
 gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|21321969|dbj|BAB96656.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K12 substr. W3110]
 gi|157065239|gb|ABV04494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           HS]
 gi|169756484|gb|ACA79183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ATCC 8739]
 gi|169887562|gb|ACB01269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188487950|gb|EDU63053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194421672|gb|EDX37682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|226840609|gb|EEH72611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|238863752|gb|ACR65750.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|242375924|emb|CAQ30605.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BL21(DE3)]
 gi|253325926|gb|ACT30528.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972111|gb|ACT37782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli B str. REL606]
 gi|253976320|gb|ACT41990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli BL21(DE3)]
 gi|260450705|gb|ACX41127.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           DH1]
 gi|284919868|emb|CBG32923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           042]
 gi|299878382|gb|EFI86593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|300317174|gb|EFJ66958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|300450726|gb|EFK14346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300460445|gb|EFK23938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|301075370|gb|EFK90176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|309700299|emb|CBI99587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ETEC H10407]
 gi|310337680|gb|EFQ02791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|315134782|dbj|BAJ41941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli DH1]
 gi|315616133|gb|EFU96752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           3431]
 gi|323939872|gb|EGB36072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E482]
 gi|323960034|gb|EGB55680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H489]
 gi|331040287|gb|EGI12494.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331051439|gb|EGI23488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|332341420|gb|AEE54754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Escherichia
           coli UMNK88]
 gi|333011476|gb|EGK30890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-272]
 gi|333021719|gb|EGK40968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-227]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|332707401|ref|ZP_08427451.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lyngbya majuscula
           3L]
 gi|332353892|gb|EGJ33382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lyngbya majuscula
           3L]
          Length = 470

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 126/388 (32%), Gaps = 33/388 (8%)

Query: 82  FSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  +  + P+LV   T+  + +               +AVTGT+GK++  S +  I Q 
Sbjct: 80  VSPGVPWDIPVLVAARTQGIETIGEIELAWRYLQSCPWVAVTGTNGKTTTTSLIAAIFQE 139

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G  +   G     +       L  P             +  +  V  E SS+ ++    
Sbjct: 140 AGFHAPACGNIGYAACEL----LLAPEI-----NGKAQETSPIDWVIGEISSYQIESS-- 188

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G  T L  DH+  H+T + Y++ K  L    L +    +I  DD Y   +   
Sbjct: 189 KDLAPRIGVLTTLTPDHLSRHKTLENYYDIKASL----LRRSQLQVINGDDPYLGNLGVN 244

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                  +   G QG            +        E         + G+    N L+A 
Sbjct: 245 YWPDAYWISITGGQGDRNFQPWAYIQDDWVIAD--SEPILPVKSLQMVGDHNRQNLLMAV 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 GI+   +   + K   VP R E V T      I    A   ++ ++ L ++   
Sbjct: 303 ATARLAGIEKNAIASAIAKFPGVPHRLEKVITWQGIDFINDSKATNYDAAQVGLASVAA- 361

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
                 ++   G  +       +  I L  A + ++ +  P      K       G   +
Sbjct: 362 ----PTILIAGGEAKAGDDTSWIETIKLKAAVVLLIGEAAPAFATRLK-----EAGYSSY 412

Query: 440 IEKGNRIEAIRTAIEMLN---KQDVLVV 464
                  +A+  A E+        V+++
Sbjct: 413 EIVETMAKAVPRAAELAQQYNAG-VVLL 439


>gi|325847851|ref|ZP_08170073.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480869|gb|EGC83922.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 436

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 95/290 (32%), Gaps = 20/290 (6%)

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +           E SS  L  H     K   G+  N+  DHID+H + + Y N K++L +
Sbjct: 137 WQMYNKDAVFVEEVSSFQL--HNTKTFKPHIGAILNISPDHIDWHGSFENYANDKLKLAK 194

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
                +   I + DD    +   +               + I+LK        ++    +
Sbjct: 195 NQDKDDFLVINH-DDKILSKNKNKFKAKIYEFSMKEKVERGIYLKDDSLYLKDEKDIFLL 253

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
             KD   +        + NA  A       GID   V+++ +    +  R EFV      
Sbjct: 254 NKKDLKIVGNH----NLANAACAMLCLYLYGIDLEKVIKYTKTFKAIEHRLEFVKKVKNV 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
                  A   +S    + +       + I++   G D+     P+  K    +  + ++
Sbjct: 310 PFYNDSKATNVDSTIKAIDSFD-----KNIILLAGGYDKKIDYSPMFEKENGKIKAMILL 364

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     + I   +       +    N   A+  + E++   D +++
Sbjct: 365 GQ-------TKYILENLCKKYKVKYFLVDNMQMAVDKSFEIMEDSDTVLL 407


>gi|295397466|ref|ZP_06807549.1| tetrahydrofolate synthase [Aerococcus viridans ATCC 11563]
 gi|294974266|gb|EFG50010.1| tetrahydrofolate synthase [Aerococcus viridans ATCC 11563]
          Length = 425

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS----GRIIVVFGCGGDRDQG 397
            P RFE     +    I +D +H  + +  + + I T       G+ + + G   D+D  
Sbjct: 286 WPARFE---MVASEPTIIIDGSHNMDGISSLKEAILTHYPASKVGKRVAIMGMLADKDVA 342

Query: 398 KRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
               + ++   +    I VT  + R+   +++ A I           +   A+  A   L
Sbjct: 343 H---VVEVIAPIFQKIITVTPHSNRALAGDQLAAMIKATGTAVEVADSDQAALEIAEADL 399

Query: 457 NKQDVLVVAG 466
            + D+L + G
Sbjct: 400 KEDDLLCIFG 409


>gi|317129299|ref|YP_004095581.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474247|gb|ADU30850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 451

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 113/362 (31%), Gaps = 43/362 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A  +      +I+ +TG++GK++  +++ ++ + S       G    ++         
Sbjct: 104 ELAYHICE---ADIIGITGSNGKTTTTTYIYEMLKGSEKDPLLAGNIGEVACEV------ 154

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                          +     +  E SS  L    +D  K       NL   HIDYH T 
Sbjct: 155 ------------AQKATEKNVLVTELSSFQL--MGIDEFKPKISLLLNLVEAHIDYHGTM 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY +AK  +F+     +      ADD    ++++          + G       ++   
Sbjct: 201 DAYVHAKGNIFKNQTSNDYIIY-NADDKKVSKLVELGQATLIPFSTKGEMKHGACIENGY 259

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                   T+  +         LPGE  V N L AA      G     + + L+    V 
Sbjct: 260 L-------TVFGKRLLPVEEMSLPGEHNVANGLAAAAAAHLAGASEEKIRQVLKSFSGVA 312

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R ++V   +         A    +    LK          IV+   G DR      ++ 
Sbjct: 313 HRLQYVDKINGRTFYNNSKATNVPATITALKAFEQ-----PIVLIAGGLDRGLSFDDLIP 367

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                     +        E  +K+        I     +     A++ A     + D++
Sbjct: 368 YF-KKKVKCVV-----SYGETAQKLVETAKKANIELVHCEKTLENAVKKAYVNSEEGDII 421

Query: 463 VV 464
           ++
Sbjct: 422 LL 423


>gi|239623443|ref|ZP_04666474.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521474|gb|EEQ61340.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 452

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 88/278 (31%), Gaps = 16/278 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T + Y   K  +      K++  +  
Sbjct: 163 EVSSFQLET--IMDFHPDVSAILNITPDHLNRHGTMENYIRIKECITLNQTEKDAVVL-- 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D        +      RV+    + K      +   +                   L 
Sbjct: 219 NYDDPVLREFGQDPELKPRVIWFSSREKLSDGFCMSGDNIVYCQKGRETILVNVRDMKLL 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + AA + + +G+  A +   +E  + V  R EFV   +             +
Sbjct: 279 GRHNYENVMAAAAIGLEMGVALADIGRVVESFNPVEHRIEFVRERTGVRYYNDSKGTNPD 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+ +         ++   G D++      + +    +  + ++       +  +K
Sbjct: 339 AAIQALRAMPG-----PTLLIAGGYDKNSEYDDWVAEFEGKVRYLVLI------GQTRDK 387

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    +   +  EA++      +  D +++
Sbjct: 388 IAECAKKHGFTEIMYAEDMQEAVQVCAVYADIGDYVLL 425


>gi|9257128|pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|13096498|pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 117 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 157 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 211

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 212 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 264

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 265 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 325 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 371

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 372 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 409


>gi|330810790|ref|YP_004355252.1| bifunctional protein: dihydrofolate synthase; Tetrahydrofolate
           synthase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378898|gb|AEA70248.1| Bifunctional protein: Dihydrofolate synthase; Tetrahydrofolate
           synthase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 435

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 116/377 (30%), Gaps = 28/377 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ VTGT+GK S  +FV  + +  GLS         +    +             
Sbjct: 39  KPAPRVITVTGTNGKGSTCAFVASLLRAQGLSVGVYSSPHLLRYNERVQVNGV-EATDAQ 97

Query: 172 KALSY-------------LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              ++                 G        +  GLD   L+          NL    I 
Sbjct: 98  LCEAFAAVEAGRGDTTLTYFEMGTLAAFWLFARAGLDAVVLEVGLGGRLDTVNLVDADIA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR----VLSVGYQG 274
              +        +    E +  E   I           +        +          +G
Sbjct: 158 LVTSIGVDHADYLGDTRESVAFEKAGIFRQGAPALCGDLNPPQPLLDKVRELNCPFFLRG 217

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
           +   L         +   +     +   L  L    +     + A L + +  D+  +++
Sbjct: 218 RDFDLAMTEQHWQWRGSDLQGNPVELHDLPLLDLPMENAALALQAYLLLGLPWDAGQIVQ 277

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCG 391
            L+   VV GR +    + +G R+ +  D  H  ++ + + + + R    GR + VFG  
Sbjct: 278 ALQATRVV-GRLDRRRFDWQGKRLNLLLDVGHNPHAAQYLAERLARRPVVGRRLAVFGLL 336

Query: 392 GDRDQGKRPI-MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI 449
            D+D       +G      A    VT  D+PRS    +++  +           +  +A+
Sbjct: 337 SDKDLDGVVEALGASVQHWA----VTPLDSPRSRTAAQLQEALQRHGASVQAYASVADAL 392

Query: 450 RTAIEMLNKQDVLVVAG 466
                +    D +++ G
Sbjct: 393 EGQCALATADDEILLFG 409


>gi|315504174|ref|YP_004083061.1| folc bifunctional protein [Micromonospora sp. L5]
 gi|315410793|gb|ADU08910.1| FolC bifunctional protein [Micromonospora sp. L5]
          Length = 447

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V +      + +D AH  + +   +  ++      +++ V    GD+D      
Sbjct: 305 PGRLERVRSAPT---VLLDGAHNPHGMAATVAAVQEEFAFSKLVGVLAVLGDKDA---AS 358

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + ++   + D  +V +++     P      +  EI  G        +  +AI  A+    
Sbjct: 359 LLELLEPVLDSIVVAENSSARAMPVDELAALAREIF-GPERVQVARDMPDAIEAAVAETE 417

Query: 458 ---KQDV----LVVAG 466
                ++    +++ G
Sbjct: 418 SDVPGELSGVGVLITG 433


>gi|240850891|ref|YP_002972291.1| UDP-N-acetylmuramate--alanine ligase [Bartonella grahamii as4aup]
 gi|240268014|gb|ACS51602.1| UDP-N-acetylmuramate--alanine ligase [Bartonella grahamii as4aup]
          Length = 475

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 98/283 (34%), Gaps = 19/283 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++ +  A   A  R F E +P    A++  D    + +  R  
Sbjct: 173 LPADIAVITNIDAEHLDHYGSFDAVREA-FRQFVENVPFYGFAVLCLDHPEVQSLAGRID 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNA 315
           +          Q     L             +    K    +       P+ G+  V NA
Sbjct: 232 DRWVITYGANPQADVRFLNLSMDGQKTHFDVLVRSRKTGRKIELKNLLLPMAGQHNVANA 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  +   +GI +  +   L +   V  RF   G + RG  I+ DY H    ++ +L+ 
Sbjct: 292 TAAIAIAHELGISNEAIKRGLAEFGGVKRRFTRTG-SWRGIEIFDDYGHHPVEIKAVLRA 350

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EK 427
            R    GR+I +      R      +    +     AD  ++T      E+P      ++
Sbjct: 351 ARESAKGRVIAI--AQPHRYSRLYHLFDDFSACFNDADTVLITPVYAAGEEPIVGFGSQE 408

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           +   I + G        +  + +    +    +D +V  G G+
Sbjct: 409 LVEHIKMAGHRDVRLIHSLEDVVSFVSKFAQAEDYVVFLGAGN 451


>gi|119026106|ref|YP_909951.1| folylpolyglutamate synthase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765690|dbj|BAF39869.1| folylpolyglutamate synthase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 532

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 113/406 (27%), Gaps = 56/406 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + +    ++ +TGT+GK S A   + IC+  G+ +             +           
Sbjct: 34  HPEQSFRVIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEHVNERIAIDGQQLSDD 93

Query: 170 LAKALSYLSSQGVTHVSVEASSHG------------------------------LDQHRL 199
                       V  V ++    G                                  R 
Sbjct: 94  DFVDTWDQVKDLVAIVDMKMDELGKPKMSFFEVLTAMAIWKFADAPVDVAIVEVGMGGRW 153

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
           D   ++      +G   +D+                 ++      II       + +   
Sbjct: 154 DATNVLDADAAIIGPVDMDHMAWLGDTVEEIATEKVGIIKPNCTVIIGRQPHEDEVMPII 213

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
              A     S+   G    +         Q  T+      +  +          +  +AA
Sbjct: 214 EAAAKENHASLVRDGVESEVVTRVPAVGGQVATLRTPNGTYTEVPIAKFGEHQAHNALAA 273

Query: 320 GLCIAIGIDSA-----LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
                + I         ++        +PGR E + T+     I +D  H  N+ E +  
Sbjct: 274 LCAAEVVIPVNGALDGDLVAEALSSVRIPGRIEQIRTSPT---IILDGGHNVNAAESLRA 330

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-----EDPEKI 428
            I       +++ V    GD+          +   L    IVT+++ R      ED +KI
Sbjct: 331 AIEENYDFQQLVGVVAMMGDKQVE---EYLGVLEPLLSHVIVTENSWRDRVMPAEDLKKI 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
              +  G           +AI+ A+ M++  D         ++V G
Sbjct: 388 ADRVF-GPERVTCIPELPDAIQEAVNMVDADDELGVGYGHGVLVCG 432


>gi|268319706|ref|YP_003293362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii FI9785]
 gi|262398081|emb|CAX67095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii FI9785]
          Length = 460

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/389 (12%), Positives = 111/389 (28%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y         + + P++            A  +        + VTG++GK++     Q+
Sbjct: 84  PYENPMVEKAEKLDIPVITEP-------EIALNVSEAP---YVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I                 +    +  +     +  A +   L  +  +   +  +     
Sbjct: 134 IMDHHLSK------NGGHAYAVGNIGVPISEVVEKATSKDLLVVEMSSFQLLGVTDIK-- 185

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  I   + N+  D   YH+T   Y  AK+R+ +     +     +        
Sbjct: 186 ----PKVAAIVDIYNNVHLD---YHKTFDNYVEAKLRITQSQDQDDYFIANF---DQKNI 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K       +V +     K             +     ++  D      +PG     N 
Sbjct: 236 LEKELDKTKAKVQTFSETDKTADYFIGDEYLESKDDHHIMKISDI----KIPGIHNQQNC 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +  D + +   L        R ++V T +         +    +  + + +
Sbjct: 292 LVAIAISKLMSADDSDIQYALSTFTGATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPS 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IH 434
            +        V+   G DR      ++  +        ++       E    +       
Sbjct: 352 FKEPE-----VLIAGGLDRGFMFDSLVP-LFKKHVKSIVL-----YGETKYLLADAARKA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A E+    D+++
Sbjct: 401 GIKNIVIVNTLQEAVPRAYELSEAGDIIL 429


>gi|259047061|ref|ZP_05737462.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella adiacens ATCC
           49175]
 gi|259036111|gb|EEW37366.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella adiacens ATCC
           49175]
          Length = 443

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 102/372 (27%), Gaps = 46/372 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV++           + +    + V    KFL               +A+TG+ GK+S  
Sbjct: 66  IVIAGNAFPDSHEELVAAREKGIEVIRYHKFLGELLKNY------KSVAITGSHGKTSTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +      +S+ IG  +     + ++       +   +   +  +    +  +   
Sbjct: 120 GLLAHVLSGMEPTSYLIGDGTGKGVESSEH-----FVLEACEYKRHFMAYRPDYAIM--- 171

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY+       +A     +++       I   DD
Sbjct: 172 -------------------TNIDFDHPDYYTDIDDVQSAFEAFGKQVKKG---IIACGDD 209

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + +             VG     I                        F  P  G+ 
Sbjct: 210 ERLRTLEAIV---PVTYYGVGEHNDVIAKNIRKEKAGSYFDAYIHGELYGHFYIPTYGDH 266

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NAL          +D   + +       V  RF        G  +  DYAH  + + 
Sbjct: 267 NILNALAIIAFYYLNQLDPNELAQQFRTFSGVKRRF--SEKVINGVTVIDDYAHHPSEIR 324

Query: 371 MILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPE 426
             L   R     + +V         R          +   LAD   + +   + R E  +
Sbjct: 325 ATLDAARQKYPDKEVVAVFQPHTFTRTIALLEEFASVLS-LADHVYLCEIFASVREEAGD 383

Query: 427 KIRAEIIHGIPG 438
               ++   + G
Sbjct: 384 VSIEDLAKLVKG 395


>gi|227524045|ref|ZP_03954094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088784|gb|EEI24096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 460

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 127/364 (34%), Gaps = 45/364 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+++       I+ VTG++GK++  + + +I              +   S  +    +
Sbjct: 104 ELAAQMTD---AEIIGVTGSNGKTTTVTMITKILNEERKKGHAYAAGNIGVSATETALKS 160

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           T                    + +E SS  L    +  +       TN+  +H+DYH+T+
Sbjct: 161 TAD----------------DTIVMELSSFMLL--GIKKLHPHVAVLTNIFSNHLDYHKTR 202

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y NAKMR+     P +   + +  D + + + KR+              +  + K   
Sbjct: 203 KNYVNAKMRITMNQTPDDFFVVNFDSDEWRQ-LSKRSRAQVVPFARTSEIDRGAYEKNGK 261

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +N + +  + + K       +PG+  V NAL A      +G  +  +   LE    V 
Sbjct: 262 LYYNDEFIMNADDIK-------VPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVR 314

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R +FV             A     +E     +        IV+   G DR      ++ 
Sbjct: 315 HRVQFVLEADGRKFYNDSKAT---DIEATQIALEGFDH--PIVLLAGGLDRGYTFDKMVP 369

Query: 404 KIALDLADIAIV---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +        A++   T D    E  +K        +    +  N  EA+  A    +  D
Sbjct: 370 QF-KQHVKAAVLFGQTAD-LLEESLQK------ASVKNITKVDNLDEAVPAAYHYSDSGD 421

Query: 461 VLVV 464
           ++++
Sbjct: 422 IILL 425


>gi|226226835|ref|YP_002760941.1| UDP-N-acetylmuramate--L-alanine ligase [Gemmatimonas aurantiaca
           T-27]
 gi|226090026|dbj|BAH38471.1| UDP-N-acetylmuramate--L-alanine ligase [Gemmatimonas aurantiaca
           T-27]
          Length = 501

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 10/169 (5%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NAL A G  +A+G   A +   L     V  RF+ +G ++ G  +  DYAH  
Sbjct: 313 PGLHNVRNALAAIGSGLALGCTVAQMAPGLAGFRGVQRRFQRLG-SAAGVEVVDDYAHHP 371

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSED 424
             +   L   R    GR IV+        +  R +  + A  L   D+  + D     E 
Sbjct: 372 TEVRATLAAARHAFPGRRIVLAFQPHLYSRT-RDLQQEFADALRETDVLYLCDIYGARET 430

Query: 425 PE-----KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           PE      + A+ I G      +G R + +   ++ + + DV++  G G
Sbjct: 431 PEPGVTSSLVADRIPG-DVVRWQGPRTDVVPALLQGVAEGDVVLTMGAG 478


>gi|332160056|ref|YP_004296633.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607383|emb|CBY28881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664286|gb|ADZ40930.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862055|emb|CBX72221.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 99/356 (27%), Gaps = 28/356 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LA+ GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PGRWVLAIAGTHGKTTTAGMVAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLVMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  A        
Sbjct: 202 KQFHHLVRLVPGTGKIIVPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVAGDASVFEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                   +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 FLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK----RPIMGKIALD 408
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K    R  +      
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGMCRNELAPSLGR 380

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +         P ++       I       +    +   ++     + ++V
Sbjct: 381 -ADEVFLFQPQH---IPWQVVEVAEACIQPAYWSADIDTLVDMVVKTAQPGNHILV 432


>gi|300859015|ref|YP_003783998.1| bifunctional dihydrofolate synthase/folylpolyglutamate synthase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686469|gb|ADK29391.1| dihydrofolate synthase / folylpolyglutamate synthase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206714|gb|ADL11056.1| Bifunctional dihydrofolate synthase/folylpolyglutamate synthase
           [Corynebacterium pseudotuberculosis C231]
 gi|302331267|gb|ADL21461.1| Bifunctional protein folC/Mur ligase family protein
           [Corynebacterium pseudotuberculosis 1002]
          Length = 520

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T      +++D AH  +    + K + R     R+I V     D+D   R +
Sbjct: 377 PGRLERVRTAPT---VFIDAAHNPHGAGALGKALDRDFDFSRLIGVVAVLSDKDY--RGV 431

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +  +   L++I + T+ +PR+ + E++  E  +  G        N   A+  A+E+    
Sbjct: 432 LTSLEPYLSEIVVTTNSSPRALEAEELAEEARNIFGEERVHVAYNLPGAVELAVELAEDT 491

Query: 460 DV-----LVVAG 466
           D+     +++ G
Sbjct: 492 DIQSGAGVIITG 503


>gi|308276956|gb|ADO26855.1| Bifunctional protein folC/Mur ligase family protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 520

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T      +++D AH  +    + K + R     R+I V     D+D   R +
Sbjct: 377 PGRLERVRTAPT---VFIDAAHNPHGAGALGKALDRDFDFSRLIGVVAVLSDKDY--RGV 431

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +  +   L++I + T+ +PR+ + E++  E  +  G        N   A+  A+E+    
Sbjct: 432 LTSLEPYLSEIVVTTNSSPRALEAEELAEEARNIFGEERVHVAYNLPGAVELAVELAEDT 491

Query: 460 DV-----LVVAG 466
           D+     +++ G
Sbjct: 492 DIQSGAGVIITG 503


>gi|331671607|ref|ZP_08372405.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
 gi|331071452|gb|EGI42809.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 135/398 (33%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKICVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLYLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|170744732|ref|YP_001773387.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium sp. 4-46]
 gi|229620047|sp|B0UFC6|MURC_METS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168199006|gb|ACA20953.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium sp. 4-46]
          Length = 471

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 144/422 (34%), Gaps = 57/422 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           AE +VVS+A    +    +     + VV   R+   L+           ++ +AV GT G
Sbjct: 67  AELVVVSTAIRRDNPELAMARERRLPVV---RRAEMLAELMRF------KSCVAVAGTHG 117

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S V  +    GL    I     I+++  + R+     + +    S          
Sbjct: 118 KTTTTSLVATLLDAGGLDPTVI-NGGIINAYGTNARMGEGEWMVVEADESD--------- 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           +       TN+  +H+D+  +  A  +A  R F + +P    A+
Sbjct: 168 -----------GTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDA-FRAFIDNIPFYGFAV 215

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK------KVCAIHNKQQVTISVEGKD 299
           +  D    ++++ R  +          Q     +       +       +        + 
Sbjct: 216 MCIDHPTVQDLVGRIEDRRIITYGENPQADVRLIDVDLRGGQSRFRVMIRDRRPGFRLEM 275

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            D + P+PG+    NA  A  +   +G+    +   L     V  RF   G    G +I+
Sbjct: 276 EDLVLPMPGKHNALNATAALAVAHELGVAPEAIRRALAGFGGVKRRFTRTG-EWNGAQIF 334

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    ++ +LK  R  T G ++ V      R      +          AD  IV  
Sbjct: 335 DDYGHHPVEIKAVLKAARASTEGNVVAVV--QPHRYTRLASLFDDFCTCFNDADTVIVAP 392

Query: 418 DNPRSEDPEKI--RAEIIHGIPGFIEKGNR-IEAIRTAIEML-------NKQDVLVVAGK 467
                E P +   R  ++ G+     +G+R   A+  + ++           D +V  G 
Sbjct: 393 VYAAGEAPIEGFDRDTLVAGLKS---RGHRNAVALERSEDLAGLVNGLVGPGDYVVCLGA 449

Query: 468 GH 469
           G+
Sbjct: 450 GN 451


>gi|78777264|ref|YP_393579.1| hypothetical protein Suden_1066 [Sulfurimonas denitrificans DSM
           1251]
 gi|78497804|gb|ABB44344.1| hypothetical protein Suden_1066 [Sulfurimonas denitrificans DSM
           1251]
          Length = 331

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 19/105 (18%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++ +      LIN+  +            ++ D+  ++ G +F A    +      I
Sbjct: 1   MRLENFLALTQTTLINEPYVHS-------FENIAFDALKVKRGDLFFAYTTQE------I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
           P A+  GA  ++      + D      +    +  D+    L   
Sbjct: 48  PLAVENGAYGVIFDKPAQISD------NEIAWIKADSLDNALKKL 86


>gi|146009|gb|AAA23802.1| folylpolyglutamate-dihydrofolate synthetase [Escherichia coli]
 gi|146020|gb|AAA23808.1| folypolyglutamate synthetase-dihydrofolate synthetase [Escherichia
           coli]
          Length = 422

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRMLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|52425669|ref|YP_088806.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307721|gb|AAU38221.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 453

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+G DH D     +A            + +  PA        +++ +K  
Sbjct: 176 HYNPKTLIINNIGFDHADIFDDLKAIQ-----RQFHHMIRTIPASGRILSVATEQSVKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            + GC         +     +       +     +  K  +  + + G+  ++NAL+A  
Sbjct: 231 LDMGCWSEKQFLGKEQEWNAERITNDCSRFAVFHLGEKVAEVHWDIVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+        L        R E  G    G  +Y D+AH    ++  L  +R   
Sbjct: 291 AAYHAGVKIEDACRALATFVNAKRRLEVKG-EVGGVTVYDDFAHHPAEIQATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  +D   +   +    +  +I       + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDEIAPALVRSDYVFLLQPDNIPWEVVEIAN---KCVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +  + +   ++     D ++V
Sbjct: 407 PTKWTADLDKLVDFVVQEAQPTDHILV 433


>gi|71909112|ref|YP_286699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
 gi|118595653|sp|Q47AA2|MURD_DECAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71848733|gb|AAZ48229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
          Length = 450

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/405 (13%), Positives = 118/405 (29%), Gaps = 45/405 (11%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK-HPENILA 119
            +A   GA+ + +S     +          P++        + LFA  +  +     I+A
Sbjct: 61  AEATFAGADFVALSPGVP-KATPEIAALEIPLI------SEIELFADGVREQVPNSQIIA 113

Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSS 179
           +TG++GK++  +    +   +G+ +   G               +PS +  A   +  + 
Sbjct: 114 ITGSNGKTTTTALTAHLLNGAGVPAIACGNI-------------SPSALD-ALMDAQDAG 159

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                  VE SS  L+      +   A +  N+  DH+D ++   A + A      +   
Sbjct: 160 ALPQVWVVELSSFQLET--THHLNAAAATVLNVSEDHLDRYEGSLANYAAAKSRVFQGKG 217

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
                ++   D        R                  +     AI   +   ++++   
Sbjct: 218 ----VMVLNRDDDWSMANGRCGRKMVTFGLNAAPRGVDYGYADGAIWRGKDKLVAIDALK 273

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
              L              A G+      D   ++E L+    +P R E V        + 
Sbjct: 274 LSGLHNAANAMAALALCEAIGV------DPLRLIEPLKGFSGLPHRVETVAEIGGVLYVD 327

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
                   +    ++       GR + +   G  + Q   P+   +         +    
Sbjct: 328 DSKGTNVGATLAAIE-----GMGRKVAIVLGGDGKGQDFSPLKPAL-EKHGRAVALI--- 378

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               D   I   +          G+   A+          D +++
Sbjct: 379 --GRDAAAIGMALEGSGVPTRILGDMEAAVLWLAAQAQAGDCVLL 421


>gi|163942418|ref|YP_001647302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus weihenstephanensis
           KBAB4]
 gi|229013893|ref|ZP_04171021.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048]
 gi|229062372|ref|ZP_04199689.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603]
 gi|229135527|ref|ZP_04264312.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|229169419|ref|ZP_04297128.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621]
 gi|229486469|sp|A9VKJ7|MURC_BACWK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163864615|gb|ABY45674.1| UDP-N-acetylmuramate--alanine ligase [Bacillus weihenstephanensis
           KBAB4]
 gi|228614059|gb|EEK71175.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621]
 gi|228647948|gb|EEL03998.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228716941|gb|EEL68627.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603]
 gi|228747562|gb|EEL97437.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 436

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 99/378 (26%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       FNA     E  L  +   I   DD
Sbjct: 159 ---------LSYYPDYAIMTNIDFDHPDYFADINDVFNAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G+ 
Sbjct: 207 EE---LQKVQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGDH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|88799422|ref|ZP_01114999.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
 gi|88777732|gb|EAR08930.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
          Length = 480

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 124/408 (30%), Gaps = 48/408 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           A +  +       +  + VV   R+   L+      +G      +A+ GT GK++  S +
Sbjct: 86  AINPDNVEVAWALDARVPVV---RRAEMLAELMRYRHG------IAIAGTHGKTTTTSLM 136

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
             +    G           ++S   + RL T   +      S  S               
Sbjct: 137 TAVM-GRGEYDPTFIIGGRLNSAGSNARLGTSRYLIAEADESDASFLH------------ 183

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   ++ +    TN+  DH++ +             F   +P     ++  DD   
Sbjct: 184 --------LQPMTAIVTNIDADHMETYCGDFERLKQTYVEFLHNVPFYGLVVLCTDDDNV 235

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           + ++  +                  +             +            +PG+  V 
Sbjct: 236 RSILP-SIQRQVMSYGFNDTADVRAIDIEKKGLQTNFTVLRSGLPSLKIELKMPGDHNVL 294

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLE 370
           NAL    +    G+    +++ L     V  RF+  G  S          DY H    L+
Sbjct: 295 NALAVIAVATDEGVPDHEIVKGLNGFDGVGRRFQVNGEFSTPKGDVLLVDDYGHHPRELQ 354

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP--- 425
           +    IRT    R +V         + +        +     D+ ++ D  P  E+P   
Sbjct: 355 VTFDAIRTGWPERRLVALFQPHRYSRTRDLYEDFVDVLSK-VDVLLLLDVYPAGEEPING 413

Query: 426 ---EKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
                +   I   G    +   +  ++I + + ++L   D+L+  G G
Sbjct: 414 ADGRSLCRSIRQRGRVDPVFIED-KDSIFSVLPDVLQDGDILLTQGAG 460


>gi|311031282|ref|ZP_07709372.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. m3-13]
          Length = 436

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 112/409 (27%), Gaps = 63/409 (15%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++  A    N P++      +FL  F  +         +AVTG  GK+S
Sbjct: 64  VIAGNAFPDTHEEIEAAKELNIPVIRYP---QFLGQFMEKYTS------IAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +S+ IG  +       +            +   +  S    +  + 
Sbjct: 115 TTGLLSHVIQGAKPTSYLIGDGTGRGVEDSEY-----FVFEACEYKRHFLSYYPDYTIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY  +    F+A                   
Sbjct: 169 ---------------------TNIDFDHPDYFGSIDDVFSAFQE------MAMQVKKGII 201

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                + + K            G +  F       +                 F     G
Sbjct: 202 ACGDDEYLQKIQAKVPVIYYGFGEENDFQARHVEKSTEGTTFDVYVRNNHYATFKINGYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + N+L    LC    I   ++   L     V  RF           +  DYAH    
Sbjct: 262 DHNIMNSLAVIALCHYEEIPVDVIQSQLLTFEGVKRRF--SEKVIGSQVLIDDYAHHPTE 319

Query: 369 LEMILKNI-RTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +   +    +      +I VF      R Q       +     AD   + D         
Sbjct: 320 IRATIDAANQKYPDRDVIAVFQPHTFTRTQTFLNEFAESLS-GADHVYLCD--------- 369

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            I         G +   + ++ I  A  +  +   L+   K HE   I+
Sbjct: 370 -IFGSAREN-QGKLTINDLLDKIDRAEILSEEGTALL--AK-HENSVII 413


>gi|307132585|ref|YP_003884601.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
 gi|306530114|gb|ADN00045.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
          Length = 437

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 123/400 (30%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        +   I +V +              +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALATPILCEAAEAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +G +    G                   + L K  S L         +
Sbjct: 117 TVTTLVGEMAHAAGWAVGVGGNIGVP-------------ALELLKQESQL-------YVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH + +      + A      E           
Sbjct: 157 ELSSFQLET--TYSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYENAKVCIV---N 211

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG          +     +  + +  E         L 
Sbjct: 212 ADDALTMPVRGADARCLSFGVDVGDYH-------LNRQQGETWLRVKGERVLNTREIKLV 264

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+GI  +  L  L     +P RF+          +    A    
Sbjct: 265 GQHNYTNALAALALADAVGIPRSSALIALTSFTGLPHRFQLALARHDVRWVNDSKATNVG 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +         
Sbjct: 325 STEAALSGL--HVDGTLHLLLGGDGKSADFSPLLRYLQG-------DRIRLYCFGRDGGQ 375

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     +A+R         D++++
Sbjct: 376 LAALRPEIAE------QTETMEQAMRLIASRAQPGDMVLL 409


>gi|260888325|ref|ZP_05899588.1| tetrahydrofolate synthase [Selenomonas sputigena ATCC 35185]
 gi|330838351|ref|YP_004412931.1| FolC bifunctional protein [Selenomonas sputigena ATCC 35185]
 gi|260861861|gb|EEX76361.1| tetrahydrofolate synthase [Selenomonas sputigena ATCC 35185]
 gi|329746115|gb|AEB99471.1| FolC bifunctional protein [Selenomonas sputigena ATCC 35185]
          Length = 431

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRP 400
            PGRFE       G RI VD AH       + +++    +G + +++ G   D+D     
Sbjct: 289 WPGRFERFTLE--GVRIVVDGAHNPAGAAALKESLDATFAGEKRVLLLGILEDKDY---R 343

Query: 401 IMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M +  +   D  ++T  D+ R+ DPE +                   A+  A++    +
Sbjct: 344 AMLRTLVRADDRVVITPPDSARAGDPENLARVAWEITREVEVVPAADAALSRALDRAAGR 403

Query: 460 DVLVVAG 466
            +L  AG
Sbjct: 404 RILCAAG 410


>gi|196230000|ref|ZP_03128863.1| FolC bifunctional protein [Chthoniobacter flavus Ellin428]
 gi|196225597|gb|EDY20104.1| FolC bifunctional protein [Chthoniobacter flavus Ellin428]
          Length = 408

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 50/153 (32%), Gaps = 16/153 (10%)

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL    L +A    S   +    +    PGRF+         R  +D AH   +
Sbjct: 235 HQMWNAALAVRALSLAGLPVSEEAIVRGLREVSWPGRFQ-----HVQSRFIIDGAHNPAA 289

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDD--NPRSED 424
              +    R      R  ++ G   D+D  G    +  IA       I+T    NPRS  
Sbjct: 290 ARRLATTWREVFGDKRASLILGVLRDKDVNGICEALLPIAGR-----ILTVPVNNPRSAT 344

Query: 425 PEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEM 455
             ++   I    P    I   +   AIR A  M
Sbjct: 345 SMEVARAIGKIAPRLECIVVRDLPAAIRIAQSM 377


>gi|91203776|emb|CAJ71429.1| similar to UDP-N-acetylmuramate:L-alanine ligase MurC [Candidatus
           Kuenenia stuttgartiensis]
          Length = 471

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 16/229 (6%)

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             +    E+ K        +     +   I+   +          I+ +     F   LP
Sbjct: 225 IINDDCPELKKIPFRHKNTITFGLRKSADIYASNIINRPCLSTFDINGQS----FELKLP 280

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  +   + I    +   L +   V  R + +G    G ++  D+AH   
Sbjct: 281 GIHNVSNALAAISVARHMNIKDNEIAAALYEYKGVQRRMDNIG-EYNGIKVIDDFAHNPE 339

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQ--GKRPIMGKIALDLA--------DIAIVTD 417
            +   ++ ++ I   R+I VF   G       +  ++      L+        +I  +  
Sbjct: 340 KIAAAIRAVK-IGGNRVIAVFQPHGFFPARFMREELINAFIQSLSPEDVLFMPEIYYIGG 398

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +      +  EI            R + I   +  + K D ++V G
Sbjct: 399 SVSKEISSADLIREIGKSGRNAFFVEKRGDIIPEIVRTVEKGDCILVMG 447


>gi|91209152|ref|YP_539138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UTI89]
 gi|110640301|ref|YP_668029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 536]
 gi|117622374|ref|YP_851287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|191174589|ref|ZP_03036083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218557028|ref|YP_002389941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli S88]
 gi|237704237|ref|ZP_04534718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|300984510|ref|ZP_07177002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|306815314|ref|ZP_07449463.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|331661134|ref|ZP_08362066.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
 gi|118595655|sp|Q0TLQ1|MURD_ECOL5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595656|sp|Q1RGA7|MURD_ECOUT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91070726|gb|ABE05607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           UTI89]
 gi|110341893|gb|ABG68130.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           536]
 gi|115511498|gb|ABI99572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|190905136|gb|EDV64781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218363797|emb|CAR01457.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           S88]
 gi|222031919|emb|CAP74657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LF82]
 gi|226902149|gb|EEH88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|281177308|dbj|BAI53638.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE15]
 gi|294492798|gb|ADE91554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           IHE3034]
 gi|300306679|gb|EFJ61199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|305850976|gb|EFM51431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|307629662|gb|ADN73966.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UM146]
 gi|312944694|gb|ADR25521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285166|gb|EFU44611.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 110-3]
 gi|315300011|gb|EFU59249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 16-3]
 gi|323950916|gb|EGB46793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H252]
 gi|323955286|gb|EGB51059.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H263]
 gi|324012251|gb|EGB81470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 60-1]
 gi|331052176|gb|EGI24215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    +    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|297538373|ref|YP_003674142.1| FolC bifunctional protein [Methylotenera sp. 301]
 gi|297257720|gb|ADI29565.1| FolC bifunctional protein [Methylotenera sp. 301]
          Length = 432

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/383 (13%), Positives = 101/383 (26%), Gaps = 36/383 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL--------- 162
                I+ V GT+GK S  + ++QI   +G           +    +             
Sbjct: 46  HPKFTIITVAGTNGKGSTCAMLEQIYTNAGYQVGCYTSPHLLRYNERVRINKQEVSDDAL 105

Query: 163 -------------TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
                             I L        +     +        L+      +  +    
Sbjct: 106 CAAFEAVDAGRIGANGEVISLTYFEVGTLAAMWHFMQTGVDVAILEIGLGGRLDAVNAFE 165

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
            N           Q+   N +  +  E       ++       +  +         +   
Sbjct: 166 PNCSIVTSIDLDHQEFLGNTRESIGFEKAGVYRTSVPAICGDANPPLSLVTFAHEVKANF 225

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                 F                ++             G +Q+ NA  A     ++    
Sbjct: 226 KRVHHDFDFSLDGVDSWQYSAGEVTYRLPIPALK----GAYQLNNAACAVSAVDSLQSRL 281

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR--TITSGRIIVV 387
            +   H+E             T S    + +D AH  ++   +  N+       G+ + V
Sbjct: 282 PVTSSHIESAMRQVSLAGRFQTASTSPHVILDVAHNPHAARALAVNLNASRTPQGQTVAV 341

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRS---EDPEKIRAEIIHGIPGFIEKG 443
           F    D+D      + +   D  D+  +   DN R    E+   I +EI      F    
Sbjct: 342 FAMLADKDIQG---VVQAVKDEIDLWYIAGIDNVRGASAEELAAIVSEIDPHA-KFKTFQ 397

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           N   A + A   + + D ++V G
Sbjct: 398 NADIAYQQACIDVGENDKILVFG 420


>gi|159038978|ref|YP_001538231.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
 gi|189029031|sp|A8LX80|MURC_SALAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157917813|gb|ABV99240.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
          Length = 511

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 92/274 (33%), Gaps = 15/274 (5%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH++ +        A    F  L   +   +  ADDA S+ + +     
Sbjct: 188 PFVSIITNIEADHLNTYGDLANLE-AAFADFARLTDPDGFVVTCADDAGSRRLAETLRAE 246

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGL 321
           G RV + G            A   +    ++        +F  P+PG     N+  A   
Sbjct: 247 GRRVYTYGTSTDADLRLTEMASSTRGIRYLAEVDGRSLGEFRLPVPGRHMGLNSASAVLA 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
              +G+        L     V  RFE  G       +Y +YA+    + + L+ +R +  
Sbjct: 307 AYLLGLPLDAAEAALAAFPGVRRRFERKGVAD-NVLVYDEYAYHPTPIALALRTLREVAG 365

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLA---DIAIVTDDNPR-----SEDPEKIRAEI 432
            GR+IVVF     R    R +  +IA  LA   ++ ++    P       E    +   +
Sbjct: 366 DGRLIVVFQPY--RLYRTRDLQTEIAEALAIADELVLLEVFGPGELREPGEGSAALIEAV 423

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  +   +   A           DV+V  G
Sbjct: 424 PLPADRKVFVDSWEAAPVEVARRARPGDVVVTMG 457


>gi|91787488|ref|YP_548440.1| FolC bifunctional protein [Polaromonas sp. JS666]
 gi|91696713|gb|ABE43542.1| FolC bifunctional protein [Polaromonas sp. JS666]
          Length = 501

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
              L A          +A  + +   +  +PGRF+ V        + +D AH  +S+  +
Sbjct: 325 SGVLAALTALRDRLPVTAQAVRNGLSMVELPGRFQIVPGQPT---LVLDVAHNPHSVAAL 381

Query: 373 LKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
            +N+  +        VFG   D+D      M      L D    TD    R+   E++ A
Sbjct: 382 AENLDAMGFYPCTHAVFGAMADKDL---APMLARVGPLIDKWYFTDLPTARAASGEELAA 438

Query: 431 --EIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVAG 466
             + +   P        +   A++ A+      D +VV G
Sbjct: 439 KWQAVESRPDVTATTHKDPELALQAAVRAAGPADRIVVFG 478


>gi|288553797|ref|YP_003425732.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudofirmus OF4]
 gi|288544957|gb|ADC48840.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pseudofirmus OF4]
          Length = 432

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 103/349 (29%), Gaps = 45/349 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++VS+AY               + VD    FL  F  +         +AVTG  GK+S  
Sbjct: 64  VIVSAAYGEDHEEVARAKEIG-IPVDQYPHFLGDFIQQFTS------VAVTGCHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +   +  +S+ IG         +D++          +                  
Sbjct: 117 GLLSHVLGSAFPTSYLIG--DGTGKGEEDSKYFVFEACEYRRHFLNYK------------ 162

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY +     F A    F E+  +   AI+   D
Sbjct: 163 -------------PDYCIMTNIDFDHPDYFKDVDDVFEA----FSEMAMQVKKAIVACGD 205

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                +     N          Q  F            +            F  P  G  
Sbjct: 206 DQY--LQGIHANVPVVFYGFSEQNDFQARSVEVTDKGTKFDVYVRNNLYGTFTIPGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    + + ++ EHL+    V  RF      S+   +  DYAH    + 
Sbjct: 264 NVLNALAVIALCHYENVPAEVLKEHLKTFQGVKRRFTEKKVGSQ--ILIDDYAHHPTEIA 321

Query: 371 MILK-NIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
             +    +      ++ +F      R +       + AL LAD   + D
Sbjct: 322 ATVDSAKKKYQDHEVVAIFQPHTFTRTKTFLNEFAE-ALKLADHVYLCD 369


>gi|227519254|ref|ZP_03949303.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX0104]
 gi|227555538|ref|ZP_03985585.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22]
 gi|229549750|ref|ZP_04438475.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC
           29200]
 gi|293382403|ref|ZP_06628340.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712]
 gi|293388252|ref|ZP_06632768.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613]
 gi|307287939|ref|ZP_07567972.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109]
 gi|312900938|ref|ZP_07760232.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470]
 gi|312902694|ref|ZP_07761898.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635]
 gi|312908370|ref|ZP_07767334.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           512]
 gi|312910557|ref|ZP_07769399.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           516]
 gi|312950943|ref|ZP_07769853.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102]
 gi|227073266|gb|EEI11229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX0104]
 gi|227175343|gb|EEI56315.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis HH22]
 gi|229305019|gb|EEN71015.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis ATCC
           29200]
 gi|291080179|gb|EFE17543.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis R712]
 gi|291082334|gb|EFE19297.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis S613]
 gi|306501084|gb|EFM70391.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0109]
 gi|310625784|gb|EFQ09067.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           512]
 gi|310631092|gb|EFQ14375.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0102]
 gi|310633748|gb|EFQ17031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0635]
 gi|311289105|gb|EFQ67661.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis DAPTO
           516]
 gi|311292037|gb|EFQ70593.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0470]
 gi|315036717|gb|EFT48649.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0027]
 gi|315149313|gb|EFT93329.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0012]
 gi|315152214|gb|EFT96230.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0031]
 gi|315157019|gb|EFU01036.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0043]
 gi|315159827|gb|EFU03844.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0312]
 gi|315161519|gb|EFU05536.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0645]
 gi|315163609|gb|EFU07626.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1302]
 gi|315167362|gb|EFU11379.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1341]
 gi|315169555|gb|EFU13572.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1342]
 gi|315574498|gb|EFU86689.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis
           TX0309B]
 gi|315576957|gb|EFU89148.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0630]
 gi|315581840|gb|EFU94031.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis
           TX0309A]
 gi|327535426|gb|AEA94260.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           OG1RF]
          Length = 456

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 88/306 (28%), Gaps = 38/306 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG                P   + A  
Sbjct: 116 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFE 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   + +                         TN+  DH DY+++ +  F+A  + 
Sbjct: 167 ACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQT 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K   A         K + +           V  +                    
Sbjct: 208 MAHQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVY 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             +     F+ P  G   + NAL    +     +D   V E +     V  RF     + 
Sbjct: 263 HKDDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS- 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
               I  DYAH    ++  +   R       II VF      R         + ALDLAD
Sbjct: 322 -DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLAD 379

Query: 412 IAIVTD 417
              + +
Sbjct: 380 EVFLCN 385


>gi|193213214|ref|YP_001999167.1| UDP-N-acetylmuramate [Chlorobaculum parvum NCIB 8327]
 gi|193086691|gb|ACF11967.1| UDP-N-acetylmuramate [Chlorobaculum parvum NCIB 8327]
          Length = 474

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 108/366 (29%), Gaps = 31/366 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTPSPIYLAK 172
              + V GT GK++  S    + +  G        G         + + L+ P       
Sbjct: 105 HTSIVVAGTHGKTTTTSLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSGLSEP------- 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                          +  S  L        +       N+  DH D   +      +   
Sbjct: 158 GFFVTEGDEYDSAFFDKRSKFLHY------RPDIAIINNVEFDHADIFDSLDDIKKS-FC 210

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   L+P     I+  DD  S EV  +A          G          +         T
Sbjct: 211 LLVNLVPSSGLLIVNGDDPNSMEVAAKAFCRVETFGMNGTADWT--ATDITTDAESTVFT 268

Query: 293 ISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +   G+       PL G + V NAL A    I  G+    + + L K      R E VG 
Sbjct: 269 VVHNGEAMGRVSVPLFGNYNVMNALAATAAAIRAGVSFESITKGLAKFKRPKRRMELVGE 328

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            + G  +  D+AH   ++ + L  I     GR IV           +     ++     D
Sbjct: 329 YAGGVTLIEDFAHHPTAVRLTLGAIAEHYPGRRIVACFEPRSNTTTRNIFQHELTECFDD 388

Query: 412 IAIVT------DDNPRSE---DPEKIRAEIIHGIPGFIEKGN---RIEAIRTAIEMLNKQ 459
            ++V        D    E   D  ++  E+          G+     + ++         
Sbjct: 389 ASVVVLGRVNRPDRYAPEKRLDAAQLCHELEAKGKRVFAAGDDDYPNDIVQFIKAEQQPG 448

Query: 460 DVLVVA 465
           DV+V+ 
Sbjct: 449 DVVVLL 454


>gi|161507313|ref|YP_001577267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           helveticus DPC 4571]
 gi|260102632|ref|ZP_05752869.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           helveticus DSM 20075]
 gi|172048225|sp|A8YUN8|MURD_LACH4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160348302|gb|ABX26976.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           helveticus DPC 4571]
 gi|260083556|gb|EEW67676.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           helveticus DSM 20075]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 112/393 (28%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y           N PI+        LS              + VTG++GK++     Q+
Sbjct: 84  PYENPMVKKAEELNIPIITEPEI--ALS--------CSDAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKSGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +      A+  
Sbjct: 176 FQL-LGVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQNSDDYFI---ANYD 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K       ++ +                   Q   I            LPG   
Sbjct: 232 QKDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLESQNEKIMK-----IVDIKLPGIHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 287 LQNSLVAIAISKVMGADNDDIAAVLSTFTGAKHRLQYVTTLDGRKVYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +        ++       E    +   
Sbjct: 347 AIPSFKEPE-----VLIAGGLDRGFLFDDLVP-LFKKHVKSIVL-----YGETKYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E+    DV++
Sbjct: 396 ARKAGIKDIVIVNTLQEAVPRAYELSEPGDVIL 428


>gi|323975748|gb|EGB70844.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TW10509]
          Length = 438

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 136/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGINMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|313607758|gb|EFR83975.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria
           monocytogenes FSL F2-208]
          Length = 461

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 97/283 (34%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 169 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDF 226

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 227 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGARD 278

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 279 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 339 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 386

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       N   A+  A       D++++
Sbjct: 387 ETADKIGRVGKIAGID-VHYVDNVEAAVPVAYRESAPGDIILL 428


>gi|326791416|ref|YP_004309237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542180|gb|ADZ84039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           lentocellum DSM 5427]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 132/398 (33%), Gaps = 43/398 (10%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLS-------LFASRLYGKHPENILAVTGTSGKS 127
                 D        +P + V    K L         FAS         I+A+TGT+GK+
Sbjct: 66  PDVKAFDLVVMSPGISPEIEVVQLAKQLGKKITGEFEFASWYCKAP---IIAITGTNGKT 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + V +I ++   S++ +G      S   +  L  P                   V  
Sbjct: 123 TTTTLVGEIMKKYNPSTYVVGNIGRAFS---EEVLQIPE---------------NGIVVA 164

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+            +  N+  DH++ H T + Y  A      +  P+E  +++ 
Sbjct: 165 EVSSFQLETADTF--HPFISALLNITPDHLNRHHTMENY-CACKYNIFKNQPEEGYSLLN 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D Y +E  K+                  +++      N      ++   +      + 
Sbjct: 222 TKDHYYEEAKKQVKARCMSFSLQEIPDCGAYVQADTLYENVHGTAHAICKIE---DLHIK 278

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NAL A  +  A G+   L+ E L     V  R E+V T           A  ++
Sbjct: 279 GTHNVENALAAIAMAAAFGVPGNLIREVLTTFKGVEHRTEYVLTKRGVDFFNDSKATNTD 338

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L  + ++   + I +   G D+    +  + K    L +   +       E  ++
Sbjct: 339 AAIAGLVGLSSL--NKPIRLIAGGMDKQTSFKDWI-KHFNGLVEKVYII-----GETKQQ 390

Query: 428 IRAE-IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I  E +  G           +AI+ A       + +++
Sbjct: 391 IVKECLEEGFTQVATFETLEDAIKAAYNESKANECILL 428


>gi|260557901|ref|ZP_05830114.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ATCC
           19606]
 gi|260408692|gb|EEX01997.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ATCC
           19606]
          Length = 482

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 121/379 (31%), Gaps = 46/379 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + I   A  +VVS+A   ++          I +V   R+   L       +G  
Sbjct: 73  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRIPIV---RRAEMLGELMRYRHG-- 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S +  +        ++ IG                     +  
Sbjct: 125 ----IAVAGTHGKTTTTSLLTTMLAEENLDPTYVIGGLLN--------------STGVNA 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           AL             +AS           ++ +A   TN+  DH+D ++           
Sbjct: 167 ALGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFV 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DDA  +E++ R                      V     +   T
Sbjct: 219 QFLHNLPFYGLAVVCGDDANIREILPRVGRPVITYGFNEDNDI--RAIDVEQDGMRSHFT 276

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G 
Sbjct: 277 VLRKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGE 336

Query: 352 NSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
              G        DY H    +E  +K  R     R +V+        + +       ++ 
Sbjct: 337 FELGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCYDDFIEVL 396

Query: 407 LDLADIAIVTDDNPRSEDP 425
               D  ++ +  P  E P
Sbjct: 397 SQ-VDQLLLLEVYPAGEKP 414


>gi|169794349|ref|YP_001712142.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AYE]
 gi|184159850|ref|YP_001848189.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           ACICU]
 gi|213159076|ref|YP_002321074.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|215481905|ref|YP_002324087.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|239503825|ref|ZP_04663135.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB900]
 gi|301344638|ref|ZP_07225379.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB056]
 gi|301513416|ref|ZP_07238653.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB058]
 gi|301596387|ref|ZP_07241395.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           AB059]
 gi|332850155|ref|ZP_08432542.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332868969|ref|ZP_08438528.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
 gi|189029225|sp|A3M9Y0|MURC_ACIBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711854|sp|B7GV74|MURC_ACIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711855|sp|B7ICE4|MURC_ACIB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470258|sp|B2I1J4|MURC_ACIBC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229470266|sp|B0V9F6|MURC_ACIBY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169147276|emb|CAM85135.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii AYE]
 gi|183211444|gb|ACC58842.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078672|gb|ABO13724.2| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii ATCC
           17978]
 gi|213058236|gb|ACJ43138.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB0057]
 gi|213988079|gb|ACJ58378.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii
           AB307-0294]
 gi|322509764|gb|ADX05218.1| murC [Acinetobacter baumannii 1656-2]
 gi|323519777|gb|ADX94158.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332731004|gb|EGJ62310.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013150]
 gi|332733012|gb|EGJ64214.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6013113]
          Length = 482

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 121/379 (31%), Gaps = 46/379 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + I   A  +VVS+A   ++          I +V   R+   L       +G  
Sbjct: 73  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRIPIV---RRAEMLGELMRYRHG-- 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S +  +        ++ IG                     +  
Sbjct: 125 ----IAVAGTHGKTTTTSLLTTMLAEENLDPTYVIGGLLN--------------STGVNA 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           AL             +AS           ++ +A   TN+  DH+D ++           
Sbjct: 167 ALGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFV 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DDA  +E++ R                      V     +   T
Sbjct: 219 QFLHNLPFYGLAVVCGDDANIREILPRVGRPVITYGFNEDNDI--RAIDVEQDGMRSHFT 276

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G 
Sbjct: 277 VLRKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGE 336

Query: 352 NSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
              G        DY H    +E  +K  R     R +V+        + +       ++ 
Sbjct: 337 FELGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVL 396

Query: 407 LDLADIAIVTDDNPRSEDP 425
               D  ++ +  P  E P
Sbjct: 397 SQ-VDQLLLLEVYPAGEKP 414


>gi|94271504|ref|ZP_01291965.1| Cytoplasmic peptidoglycan synthetases-like [delta proteobacterium
           MLMS-1]
 gi|93450433|gb|EAT01623.1| Cytoplasmic peptidoglycan synthetases-like [delta proteobacterium
           MLMS-1]
          Length = 305

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 90/280 (32%), Gaps = 19/280 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +  +    TN+  +H+D++   +A   A    F   +P    AI+  DD     ++    
Sbjct: 14  LSPVLEIVTNIDHEHVDHYADLEAVK-AAFLEFINRIPFYGAAILCLDDDNVTALLPMIR 72

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                                    ++ +   S + +       +PG   VYNAL A  L
Sbjct: 73  KRVITYGLSSQADIQAREITTRGFISRFE-VWSRQQRLGKVSLAVPGRHNVYNALAAIAL 131

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              + I  A +   L     V  R +  G  S G  +  DY H    +   L  +R    
Sbjct: 132 GRELEIPFATIARALNNYSGVQRRLQVKG-ESDGITVIDDYGHHPTEIRATLAALRAAWP 190

Query: 382 GRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSED----------PEKIR 429
            R +VV        R  G        A   AD+ I+ +     E              +R
Sbjct: 191 RRRLVVLFQPHRYSRTAGLFQDFC-TAFHDADLLILNNIYAAGEAEIPEVAGDALALALR 249

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 +    E  +   A+   +  L + DV++  G G+
Sbjct: 250 RHGQREVSYVPELADLPTAV---LGRLQRGDVVLTLGAGN 286


>gi|260596516|ref|YP_003209087.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
 gi|260215693|emb|CBA28032.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
          Length = 488

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 127/415 (30%), Gaps = 61/415 (14%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +AV GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAVAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPT---STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I   +G   +F  G     +   +   ++R                             S
Sbjct: 140 IYAEAGLDPTFVNGGLVKAAGTHARLGNSRYLIAEADE---------------------S 178

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                H    ++ +    TN+  DH+D +             F   LP    A++  DD 
Sbjct: 179 DASFLH----LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDP 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             +E++ R                 +   +           +  +  +       PG   
Sbjct: 235 VIRELLPRVGRQITTYGFSEDADVRVENYR-QTGAQGHFTLVRQDKPELRVTLNAPGRHN 293

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYA 363
             NA  A  +    GI+   +L  LE       RF+F+G               +  DY 
Sbjct: 294 ALNAAAAVSVATEEGIEDEAILRALESFQGTGRRFDFLGEFPLANVNGKSGTAMLVDDYG 353

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPR 421
           H    ++  ++  R     +  +V      R    R +    A  L+  D+ ++ D  P 
Sbjct: 354 HHPTEVDATVRAARAGWPEKN-LVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPA 412

Query: 422 SEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            E P        +   I   G    I   +  +       +L+  D+++V G G+
Sbjct: 413 GEAPIPGADSRSLCRTIRARGKVDPILVSDPAQVAAMLAPVLSGNDLILVQGAGN 467


>gi|281412288|ref|YP_003346367.1| UDP-N-acetylmuramate/alanine ligase [Thermotoga naphthophila
           RKU-10]
 gi|281373391|gb|ADA66953.1| UDP-N-acetylmuramate/alanine ligase [Thermotoga naphthophila
           RKU-10]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYV 360
           F   +PG   V NAL    L  ++G D A  LE LE    V  RF            +  
Sbjct: 257 FKLKVPGFHNVLNALAVIALFDSLGYDLAPALEALETFRGVHRRFSIAFHDPETNIYVID 316

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI--MGKIALDLADIAIVTDD 418
           DYAHT + +  +L+  + +     IVV        + +R      K AL LAD  +VT+ 
Sbjct: 317 DYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAK-ALQLADEVVVTEV 375

Query: 419 NPRSED 424
               E+
Sbjct: 376 YDAFEE 381


>gi|304396561|ref|ZP_07378442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
 gi|304356070|gb|EFM20436.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
          Length = 438

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 130/404 (32%), Gaps = 66/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L     +      I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALAHPILSEAVEAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L ++ + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGLP-------------ALSLLQSPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TYSLKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYENAQICIV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +  G          +          +  E         + 
Sbjct: 213 ADDALTMPVRGADTRCVSFGVDFGDYHLNKQQGSIWL-------RVKGEKVLNTAEMKMV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L  L   + +  RF+ V  +     I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLAALTHFNGLAHRFQLVHEHQGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR------ 421
           S E  L  ++    G + ++ G  G +     P++            +  DN R      
Sbjct: 326 STEAALNGLQ--VQGTLWLLMGGDG-KSADFTPLIP----------WLQGDNVRLYCFGR 372

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +    +R +I       +      +A+      +N  D++++
Sbjct: 373 DGDALAALRPDI------AVRTETMRQAMEQIAPQVNAGDMVLL 410


>gi|283835150|ref|ZP_06354891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
 gi|291069450|gb|EFE07559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
          Length = 438

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 138/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAEREL--------------------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGINMGDYH-------LNRQQGETWLRVKGEKVLNVKEMTLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVLNHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G +     P+             +T DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-KSADFMPL----------QRYLTGDNIRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEAAEQTETMEQAMRLLAPRVKPGDMVLL 410


>gi|262196939|ref|YP_003268148.1| FolC bifunctional protein [Haliangium ochraceum DSM 14365]
 gi|262080286|gb|ACY16255.1| FolC bifunctional protein [Haliangium ochraceum DSM 14365]
          Length = 461

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 18/166 (10%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL---HVVPGRFEFVGTNSRGGRIYVDYA 363
           P +       +A    +AI            +      +PGR E V        ++VD A
Sbjct: 244 PHQRDNAACALAIVEHLAILGHLDDNPARWRQAVAETRLPGRLEQVAPE-----VFVDGA 298

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRS 422
           H  ++   +  ++  +   R ++V     D+DQ     +    L   D  +VT  +  R+
Sbjct: 299 HNPHAARALAASLDALPRPR-VLVLAMSRDKDQ---AGIAAALLPAVDAVVVTAYEQERA 354

Query: 423 EDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                + A  + +              A+  A E+L +    ++AG
Sbjct: 355 TPVAALAALVDELAPALHCERVPGAAAAVDRARELLKRG---LLAG 397


>gi|160915064|ref|ZP_02077277.1| hypothetical protein EUBDOL_01072 [Eubacterium dolichum DSM 3991]
 gi|158432863|gb|EDP11152.1| hypothetical protein EUBDOL_01072 [Eubacterium dolichum DSM 3991]
          Length = 434

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 94/285 (32%), Gaps = 18/285 (6%)

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                      S    +H L   +      TN+  DH+DY++    Y +A    FE    
Sbjct: 140 MPQDSKYFIVESCEYKRHFL-AYRPNYAILTNIELDHVDYYKDLADYCDA----FEAFAN 194

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
           +    I+   D  +   +K           +        +  +   +      I      
Sbjct: 195 QVKKGIVMFGDDANVRSLK--VTTKHLYYGLEEDNDVRAVNVIQNENGMSFDVIYQNTVF 252

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
             F  P  G+  ++N+L    L I  G+ + ++ E L     V  RF      + G    
Sbjct: 253 GSFKLPFVGKPLLWNSLGVIALGIMEGLSAQILQEGLASFPGVKRRF--TIEENHGNVYI 310

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD 417
            DYAH   +++ +++  RT    R I+      DR       M + A   +LAD   + +
Sbjct: 311 DDYAHHPTAVQYMIEAARTKYPNRKIIAL-FKPDRYSRIYYFMDRFAQALNLADEVFLCN 369

Query: 418 --DNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             +N   E+   I   ++   I   +       A   A  +  + 
Sbjct: 370 FPENAAKEEGIDITIQDLADKIEKAVVIEEDEAA---ARMLAKRG 411


>gi|332982161|ref|YP_004463602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mahella
           australiensis 50-1 BON]
 gi|332699839|gb|AEE96780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mahella
           australiensis 50-1 BON]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 98/298 (32%), Gaps = 18/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +    +         V  E SS  L+  R    K    +  N+  DH++ H T   Y 
Sbjct: 143 IGMPMISAIEQYGPGDVVVAEISSFQLESIRYF--KPHVSAILNITEDHLNRHGTFDNYI 200

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            A           +   ++  D+   +++++  +             +   +K    I  
Sbjct: 201 -AIKSRIFMNQGPDDYVVLNMDNEPCRQLIELPNAHVLPFSRKQELDEGAMVKDNYIICR 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                  +   +      +PG+  + NAL +A +  A+GI   ++ + L     V  R E
Sbjct: 260 LNSREDKICRVN---DIKIPGKHNLENALASAAIAYAMGIGPDVIAQGLRTFEGVEHRIE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV        I        ++    ++ +        I++   G D+       +     
Sbjct: 317 FVDEIDGVRFINDSKGTNPDAAVKAIEAVDG-----PIILIAGGMDKHADFTGFIEAFDS 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++       E  ++I +     G     +  +  EA+  A  + +  D +++
Sbjct: 372 KVKALVLL------GETADQIASAARRMGFDNIYKVHSLQEAVEQAWHLSSAGDCILL 423


>gi|290892183|ref|ZP_06555179.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290558306|gb|EFD91824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 97/283 (34%), Gaps = 24/283 (8%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGARD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI R   I GI       N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGID-VHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|315038048|ref|YP_004031616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1112]
 gi|312276181|gb|ADQ58821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1112]
 gi|327183328|gb|AEA31775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1118]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 112/393 (28%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y  Q        N PI+         S              + VTG++GK++     Q+
Sbjct: 84  PYENQMVQKAEELNIPIITEPEIALSCSE----------APYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKSGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +      A+  
Sbjct: 176 FQL-LGVTDIDPKVAAIVDIYHNVHLDYHKTFENYVNAKLNVTRTQTSDDYFI---ANYD 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + +    +  ++ +                   Q   I            LPG   
Sbjct: 232 QKDILAQEKKVSPAKMQTFSETDHNADYFIGDEYLESQNEKIMK-----IADIKLPGIHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 287 LQNSLVAIAISKIMGADNDDIAAVLSTFTGAKHRLQYVTTLDGRKVYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +   +        V+   G DR      ++  +        ++       E    +   
Sbjct: 347 AIPAFKEPE-----VLIAGGLDRGFTFDDLVP-LFKKHVKSIVL-----YGETKYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E+    DVL+
Sbjct: 396 ARKAGIKDIVIVNTLQEAVPRAYELTEPGDVLL 428


>gi|238757553|ref|ZP_04618738.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia aldovae ATCC 35236]
 gi|238704315|gb|EEP96847.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia aldovae ATCC 35236]
          Length = 461

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 105/359 (29%), Gaps = 34/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLTWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDLKAIQKQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +  K    +   D+   + +     +    V   G                     
Sbjct: 207 LVRLVPGKGKIIVPDNDNPLKQVMAMGCWSEQELVGETGSWFARKVAVDASVFEVFLDNE 266

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E       + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 267 LVGEV-----SWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---L 409
           + G  +Y D+AH   ++   L  +R+   G   ++       +  K  +           
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDVLVV 464
           AD   +         P+ I  +++      I+  +    I T ++M        D ++V
Sbjct: 381 ADEVFLFQ-------PQHIPWQVVEVAEACIQPAHWSADIDTLVDMITKTALPGDHILV 432


>gi|218131847|ref|ZP_03460651.1| hypothetical protein BACEGG_03469 [Bacteroides eggerthii DSM 20697]
 gi|217986150|gb|EEC52489.1| hypothetical protein BACEGG_03469 [Bacteroides eggerthii DSM 20697]
          Length = 460

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 106/336 (31%), Gaps = 37/336 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +A
Sbjct: 111 SSKGLCVAGTHGKTTTSTMAAHLFHQSHIGCTAF-LGGISKNYGTNLLLSQTSPYTVIEA 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
             +  S       +                      T    DH+D + T++AY  +    
Sbjct: 170 DEFDRSFHWLSPYMSV-------------------ITATDPDHLDIYGTREAYLESFRHY 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVT 292
              + P  +  I           ++     G RV +        H + +           
Sbjct: 211 TTLIQPGGALIIRKGL------ALQPDVQPGVRVYTYSRDEGDFHAENIRIGNGEIFIDF 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           ++ + +  D    +P    + N + A  L    G+    + + +     V  RF+F    
Sbjct: 265 VAPDTRINDIRLGVPIGINIENGVAAMALAHLNGVTDEEIKQGMASFRGVDRRFDF-KIK 323

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-- 410
           +       DYAH    +   +K++R +   + I          +  R      A  L+  
Sbjct: 324 TSRLVFLSDYAHHPAEIAQSVKSVRELYKDKKITAIFQPHLYTRT-RDFYKDFADSLSLL 382

Query: 411 DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFI 440
           D  I+T+  P  E P        I   +  GI   I
Sbjct: 383 DEVILTEIYPAREQPIPGVSSRLIYDNLRPGIEKCI 418


>gi|284802483|ref|YP_003414348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5578]
 gi|284995625|ref|YP_003417393.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5923]
 gi|284058045|gb|ADB68986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5578]
 gi|284061092|gb|ADB72031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5923]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 93/282 (32%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTTDDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|317049721|ref|YP_004117369.1| UDP-N-acetylmuramate [Pantoea sp. At-9b]
 gi|316951338|gb|ADU70813.1| UDP-N-acetylmuramate [Pantoea sp. At-9b]
          Length = 451

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 101/360 (28%), Gaps = 38/360 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              +LAV GT GK++ A     I +  G    F IG        +     +    I   +
Sbjct: 102 DRWVLAVAGTHGKTTTAGMAAWILEACGLEPGFIIGGVPGNFDVSAKLGKSPFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S    +    V                         NL  DH D     +A       
Sbjct: 162 YDSAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDLRAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+    GC               K       +   
Sbjct: 202 KQFHHLIRIVPGQGKILLPEHDHNLKQVMAMGCWSEQETVGDNGHWQAKKLTPDASRWEA 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                K  +  + L GE  ++N L+A      +G+      + L +      R E  G  
Sbjct: 262 WLDGAKVAEVNWGLVGEHNMHNGLMAMAAARHVGVKPEDAGDALGRFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDLA 410
               ++Y D+AH   ++   L  +R+   G  RI+ V        +     MG    DLA
Sbjct: 321 VNAIKVYDDFAHHPTAILATLAALRSKVGGTARILAVLEP-----RSNTMKMGVSKNDLA 375

Query: 411 ------DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 D   +   +     P ++       I       +    +    ++    D ++V
Sbjct: 376 PSLGRADEVFLFQPHH---IPWQVSDVADACIQPAHWSADIDTLVEMVAKVAQPGDNILV 432


>gi|238784568|ref|ZP_04628575.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
 gi|238714534|gb|EEQ06539.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
          Length = 491

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 227 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLK-RLDKPLMTVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRG 355
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 286 LNAPGRHNALNAAAAVAVATEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGS 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 346 VMLVDDYGHHPTEVDATVKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         ++LN  D+++V G
Sbjct: 405 LMLDVYAAGETPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNSDDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|300741263|ref|ZP_07071284.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|311113338|ref|YP_003984560.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380448|gb|EFJ77010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|310944832|gb|ADP41126.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 533

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 124/383 (32%), Gaps = 48/383 (12%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+   ++  G+     L +TGT+GK++    V  I + +G  S Q+G     + +     
Sbjct: 150 LAWRLNQRQGRVTPKWLCLTGTNGKTTTVGMVDSILKAAGKKSLQVGNVGMPAVY----- 204

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                        +    +     +VE SS  L       +   A    N+  DH+D+H 
Sbjct: 205 -------------AVADDEPYEFFAVELSSFQLHW--TSSLSPYASVVLNVAEDHVDWHG 249

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSK---EVMKRAHNAGCRVLSVGYQGKFIH 278
           + +AY   K R++E           +AD        +V++ A   G     +        
Sbjct: 250 SFEAYKADKARVYENTQAACIFNTDHADTLRMVEEADVIEGARAIGISSTEIPSVSMLGL 309

Query: 279 LKKVCAIHNKQQVTISVEGKDF------DFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
            + +       +   S   +              P +  V NAL AA LC A  I    V
Sbjct: 310 AENIIVDRAFLKNRYSEALELGVLEDLAPVPGQAPAQHTVENALAAAALCRAANIAPEAV 369

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L        R + V        +    A   ++    +    ++           G 
Sbjct: 370 RDGLRSYKPGAHRNQTVLYRDGIQWVNDSKATNPHAANASMSAYPSLIW------IAGGL 423

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-------- 444
            +      ++ + A  L  + I+  D   +   +   A+    +P +    +        
Sbjct: 424 SKGVEYDDLIAQHASRLKAVLIIGTD---TAGLKTSLAKYASHVPTYNMTASANDPSDGV 480

Query: 445 --RIEAIRTAIEMLNKQDVLVVA 465
                A+  A E+  + D +++A
Sbjct: 481 TVMEAAVVKAEELAAEGDTVLMA 503


>gi|300361456|ref|ZP_07057633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
 gi|300354075|gb|EFJ69946.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
          Length = 460

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/389 (12%), Positives = 108/389 (27%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y        ++ N P++            A  +        + VTG++GK++     Q+
Sbjct: 84  PYENPMVEKALKLNIPVITEP-------EIALNVSEAP---YVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I                 +    +  +     +  A     L  +  +   +  +     
Sbjct: 134 IMDHHLSK------NGGHAYAVGNIGVPISEVVEKATNKDLLVVEMSSFQLLGVTDIK-- 185

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  I   + N+  D+                   +       A     +   +E
Sbjct: 186 ----PKVAAIVDIYNNVHLDYHKTFDNYVEAK--LRITQSQDQNDYFIANFDQKNILDRE 239

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K          +      FI  + + +  + Q + IS           +PG     N 
Sbjct: 240 LKKTKAKVQTFSETDKTADYFIGDEYLESKDDHQIMKISD--------IKIPGIHNQQNC 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G D + +   L        R ++V T +         +    +  + + +
Sbjct: 292 LVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPS 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IH 434
            +        V+   G DR      ++  +        ++       E    +       
Sbjct: 352 FKEPE-----VLIAGGLDRGFMFDSLVP-LFKKHVKSIVL-----YGETKYLLADAARKA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A E+    DV++
Sbjct: 401 GIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|170767490|ref|ZP_02901943.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia
           albertii TW07627]
 gi|170123824|gb|EDS92755.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia
           albertii TW07627]
          Length = 422

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/395 (15%), Positives = 115/395 (29%), Gaps = 48/395 (12%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V      L +       K    +  V GT+GK +    ++ I   +G           +
Sbjct: 34  RVSQVAACLGVL------KPVPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLV 87

Query: 154 SSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG 213
               +           L ++    S   +     + S    +   L  + L   +  ++ 
Sbjct: 88  RYTERVRVQGQ----ELPESAHTASFAEIEVARGDISLTYFEYGTLSALWLFKQAQLDVV 143

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +       A       +                D  S    K       +   VG  
Sbjct: 144 ILEVGLGGRLDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRHEKPAIVGEP 203

Query: 274 GKFIHLKKV--------CAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAA 319
                +  V             +   +++     F          PLP   Q   A   A
Sbjct: 204 IMPYTIADVAQEKGALLQRCGVEWSYSVTDHNWSFTDAHGTLENLPLPLVPQPNAATALA 263

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            L  +    S   +       ++PGRF+ V  + R   +  D AH  ++ E +   ++ +
Sbjct: 264 ALRASDLDVSEQAIRDGIASAILPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMQAL 320

Query: 380 T-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAE 431
             +GR++ V G   D+D         IA  LA +  V DD        PR         +
Sbjct: 321 PKNGRVLAVIGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQ 367

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++  +       +  +A   A+     +D ++V G
Sbjct: 368 LLEHLGNGKRFDSVAQAWDAAMADAKAEDTVLVCG 402


>gi|170288515|ref|YP_001738753.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga sp. RQ2]
 gi|229620441|sp|B1L9S2|MURC_THESQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170176018|gb|ACB09070.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga sp. RQ2]
          Length = 457

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD 361
              +PG   V NAL    L  ++G D A VLE LE+   V  RF            +  D
Sbjct: 258 KLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD 317

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI--MGKIALDLADIAIVTDDN 419
           YAHT + +  +L+  + +     IVV        + +R      K AL LAD  +VT+  
Sbjct: 318 YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAK-ALQLADEVVVTEVY 376

Query: 420 PRSED 424
              E+
Sbjct: 377 DAFEE 381


>gi|1165288|gb|AAA85627.1| MurF [Borrelia burgdorferi]
          Length = 397

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 111/355 (31%), Gaps = 25/355 (7%)

Query: 67  GAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           G +    S  +  +             L+  N  K L   AS L  K     +A+TG++G
Sbjct: 3   GVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNG 62

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I  +   +    G  ++               +   +  +          
Sbjct: 63  KTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILR-----VEGNEEYAVFEVGVSYVG 117

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            ++  S  L               TN+   H+   +  QA    K ++  + +       
Sbjct: 118 EMDLLSQILK--------PEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIEIFVV-- 167

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               + Y   + KRA  A   V  V +  + + +K    +  K         K F++   
Sbjct: 168 -NEMNDYCVYLEKRAKIANPNVKIVYFDFENLSIKSFSFLDGKFSFDFV--YKGFEYSIL 224

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G   ++NA+    L + +G+    + E L +     GR E +  N     +   Y   
Sbjct: 225 LLGRHNIFNAIGCINLALFLGMREKEIKEGLIETAFQKGRAEILTKNGY-LILNDSYNGN 283

Query: 366 SNSLEMILKNIRTIT-SGRIIVVFGCGGDRD----QGKRPIMGKIALDLADIAIV 415
             S   +   I  +    +  +V G   +      +  + ++ +      D   +
Sbjct: 284 MGSFMALKNMILDLNIQNKKFIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFL 338


>gi|15643003|ref|NP_228045.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga maritima MSB8]
 gi|6919931|sp|Q9WY73|MURC_THEMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4980729|gb|AAD35322.1|AE001707_9 UDP-N-acetylmuramate--alanine ligase [Thermotoga maritima MSB8]
          Length = 457

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD 361
              +PG   V NAL    L  ++G D A VLE LE+   V  RF            +  D
Sbjct: 258 KLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD 317

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI--MGKIALDLADIAIVTDDN 419
           YAHT + +  +L+  + +     IVV        + +R      K AL LAD  +VT+  
Sbjct: 318 YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAK-ALQLADEVVVTEVY 376

Query: 420 PRSED 424
              E+
Sbjct: 377 DAFEE 381


>gi|24987384|pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate-Alanine Ligase
           Murc (Tm0231) From Thermotoga Maritima At 2.3 A
           Resolution
          Length = 469

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD 361
              +PG   V NAL    L  ++G D A VLE LE+   V  RF            +  D
Sbjct: 270 KLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD 329

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI--MGKIALDLADIAIVTDDN 419
           YAHT + +  +L+  + +     IVV        + +R      K AL LAD  +VT+  
Sbjct: 330 YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAK-ALQLADEVVVTEVY 388

Query: 420 PRSED 424
              E+
Sbjct: 389 DAFEE 393


>gi|254827076|ref|ZP_05231763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL N3-165]
 gi|258599459|gb|EEW12784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL N3-165]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 89/282 (31%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTTDDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I +  +     +         +V+      +      V   +      +  E  +   
Sbjct: 221 LVINWDQEE----LKNLTKQTKAQVIPFSTTQRLNQGSYVQNGNIMFNDEVIGERDNILL 276

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
               PGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 277 ----PGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|149242346|pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|149242349|pdb|2JFG|A Chain A, Crystal Structure Of Murd Ligase In Complex With Uma And
           Adp
 gi|149242350|pdb|2JFH|A Chain A, Crystal Structure Of Murd Ligase In Complex With L-Glu
           Containing Sulfonamide Inhibitor
 gi|170785037|pdb|2UUO|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|170785038|pdb|2UUP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261087|pdb|2VTD|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261088|pdb|2VTE|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
          Length = 445

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAX---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|152977042|ref|YP_001376559.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189028972|sp|A7GTV6|MURC_BACCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152025794|gb|ABS23564.1| UDP-N-acetylmuramate--alanine ligase [Bacillus cytotoxicus NVH
           391-98]
          Length = 436

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 103/379 (27%), Gaps = 47/379 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+  +A+               + V     FL    S+         +AVTG  GK+S 
Sbjct: 63  VIIAGNAFPDTHEEIMAAKELN-IPVHRYHHFLGNLMSQYTS------VAVTGAHGKTST 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  + Q +  +S+ IG               T   +  +K  ++ + +   H     
Sbjct: 116 TGLLAHVMQGANPTSYLIG-------------DGTGHGVENSKYFAFEACEYRRHFLSYY 162

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
             + +               TN+  DH DY       F+A     E  L  +   I   D
Sbjct: 163 PDYAI--------------MTNIDFDHPDYFADINDVFHAFQ---EMALQVKKGIIACGD 205

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     + K            G    F                         F     G 
Sbjct: 206 DEE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTVFDVFVRNTYYETFKITGYGN 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    ID  +V   L     V  RF       R   I  DYAH    +
Sbjct: 263 HSVLNALAVIALCHYENIDVEVVKHQLTTFEGVKRRFNEK--TVRDQVIIDDYAHHPTEI 320

Query: 370 EMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDP 425
              ++        R I+         R +       +     AD   + D   + R    
Sbjct: 321 NATIEAAHQKYPEREIIAIFQPHTFSRTETFLDEFAESLSK-ADQVYLCDIFGSARENKG 379

Query: 426 EKIRAEIIHGIPGFIEKGN 444
           E    ++   I G     +
Sbjct: 380 ELTIEDLQKRIDGAELITD 398


>gi|325523914|gb|EGD02131.1| folylpolyglutamate synthase [Burkholderia sp. TJI49]
          Length = 436

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     R
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHAAAVLAQNLGNMGFFPYTYAVFGAMHDKDIDGVLR 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+   E++ A +   G+            +  EA R A
Sbjct: 351 HLKGEI-----DHWCVTDLPLPRAASAEQLEAALHKAGVGNGPDSSVTRYASPAEAFRDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
 gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
          Length = 437

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 109/356 (30%), Gaps = 45/356 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                 + I+ +TG++GKS+V + V ++ + +G+     G                   +
Sbjct: 99  FCRAATKPIVGITGSNGKSTVTTLVYEMAKAAGVKVGMGGNIGIP-------------AL 145

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+      +K  A +  N+  DH+D +   + Y  
Sbjct: 146 SLLNEDCEL-------YVLELSSFQLET--TYSLKAAAATILNVTEDHMDRYMDLEDYRQ 196

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK+R     +   +   +  ++                  +      ++  +        
Sbjct: 197 AKLR-----IYHNAKVGVLNNEDRLTFGENENQAKHTVSFAENSADYWLKTENGKQYLMV 251

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +   I            L G     N L A  L  AIGI+   +   L     +  RF+ 
Sbjct: 252 KDEVILP-----CEEATLVGRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQL 306

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           V   +    I    A    S    L  +     G++ ++ G  G     K     ++A  
Sbjct: 307 VHQANGIRWINDSKATNVGSTVAALAGL--YIEGKLHLLLGGDG-----KGADFSELAEL 359

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    I+     R        A +              +AI      L   D++++
Sbjct: 360 INQPHIICYCFGRD------GALLAKFSSQSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|319892171|ref|YP_004149046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161867|gb|ADV05410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 138/429 (32%), Gaps = 66/429 (15%)

Query: 54  EDGHLFIPQAIAQ-----GAEAIVVSSAYSLQDFSATIRSN------TPILV--VDNTRK 100
            DG+     A A+     G   +  +   +L D +  I  N       PI+        K
Sbjct: 38  NDGNDLSNDAHAKDLEDLGISVVSGAHPLALLDEAPIIFKNPGIPYTVPIIQEAQKQGLK 97

Query: 101 FLSL--FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            L+    +  +       I+ +TGT+GK++V S +  +  +S  +    G    ++S   
Sbjct: 98  ILTEVELSYLISEAP---IIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVASKVA 154

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
               T                    ++  E SS  L    ++  +      TNL   H+D
Sbjct: 155 QEVKT------------------DEYLVTELSSFQLL--GIEHYRPHIAIITNLYSAHLD 194

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           YH+  + Y NAK R+FE     +        +   + ++  +      +           
Sbjct: 195 YHENLENYQNAKKRIFENQTESDYLIF----NDKQRHLIDTSKIRAKILYFSTQHRVDGI 250

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             +   I       I ++         L       N L A    I  G+  + +++ L  
Sbjct: 251 YVEKEYIVYNGVRLIHLDDIVLPGEHNL------ENILAAVMAAILAGVSISAIVQSLST 304

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +  R +++G N          A  + + +  L + +       ++    G DR  G 
Sbjct: 305 FSGIAHRLQYIGNNKTNKYYNDSKATNTLATQFALSSFKQ-----PVIWLCGGLDRGNGF 359

Query: 399 R---PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               P M  +        +VT      E  +K            I   +  +A+     +
Sbjct: 360 DELIPYMNNV------RVMVT----FGETQDKFVKLGESQGKYVIRAKDVTDAVAKVQVV 409

Query: 456 LNKQDVLVV 464
           +   DV+++
Sbjct: 410 IEPNDVVLL 418


>gi|304445552|pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Rhodanine Inhibitor
 gi|306991519|pdb|2X5O|A Chain A, Discovery Of Novel 5-Benzylidenerhodanine- And
           5-Benzylidene- Thiazolidine-2,4-Dione Inhibitors Of Murd
           Ligase
          Length = 439

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 117 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 157 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAX---LRIYENAKVCVVN 211

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 212 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 264

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 265 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 325 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 371

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 372 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 409


>gi|227875254|ref|ZP_03993396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           mulieris ATCC 35243]
 gi|269978143|ref|ZP_06185093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mobiluncus
           mulieris 28-1]
 gi|227844159|gb|EEJ54326.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           mulieris ATCC 35243]
 gi|269933652|gb|EEZ90236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mobiluncus
           mulieris 28-1]
          Length = 505

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/428 (16%), Positives = 133/428 (31%), Gaps = 43/428 (10%)

Query: 60  IPQAIAQGAEAI-VVSSAYSLQDFSATIRSNTPILVVD------NTRKFLSLFASRLYGK 112
             QA+  GA  +   S         A + +   + +V       N    LS  A+ ++ +
Sbjct: 46  ARQAL--GASGVAFCSLVGEENQAQAAVEAGHKLFIVSPGIPPHNPLYRLSAVAAPVWSE 103

Query: 113 HP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +    ++             + +          +            TP      
Sbjct: 104 VELAWQIQQESSNRGCKWLCITGTNGKTTTTGMLAQMLITGGVVATAVGNYGTP------ 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +  ++   V  ++VE SS  L  H    ++  A  + N   DHID+H +   Y     
Sbjct: 158 -IVQVVAEGAVDALAVELSSFQL--HATFSVQPWASVWLNFAPDHIDWHGSADEYAW--- 211

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
              +     +  A     +    +V+ ++     R+  +           V       + 
Sbjct: 212 DKSKIYRGVQHAAFYPVTEELPTKVLAQSGLPPERIFGLTPGIPQPGFLGVIDDVLVDRA 271

Query: 292 TISVEGK-----------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             S   K           +     P P    + + L AAGL  A G+    V   + +  
Sbjct: 272 FTSDPAKQALELARFADLEHLTGQPTPTSAILQDTLAAAGLARAYGLQPVWVQRGIREFE 331

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           +   R   VG       I    A  +++    L+++          V+  GGD       
Sbjct: 332 LEHHRRAPVGVFDGVSYIDDSKATNTHAAAASLRDVAD-----KHAVWIVGGDPKGQDFH 386

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGN--RIEAIRTAIEMLN 457
            + K+       A++   +P  E   +  A+   GIP   IE G+      ++ A +   
Sbjct: 387 QLVKLVAPKVKAAVLIGLDP--EPFRQAFAQNAPGIPLKRIEPGDNLMERTVKAATDFAA 444

Query: 458 KQDVLVVA 465
             DV+++A
Sbjct: 445 SGDVVLLA 452


>gi|7245651|pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7245652|pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7546574|pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|157834055|pdb|1UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 65  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 116

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 117 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 157 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAX---LRIYENAKVCVVN 211

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 212 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 264

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 265 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 325 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 371

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 372 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 409


>gi|117924065|ref|YP_864682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
 gi|117607821|gb|ABK43276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
          Length = 454

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 121/392 (30%), Gaps = 47/392 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
             S       I +  P++         +              + +TGT+GKS+V + V  
Sbjct: 76  PRSHPAIQHAIAAGVPVI---------NDIELLFRHSEQAAFVGITGTNGKSTVTTLVGL 126

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           +  R   ++   G                   + L +A             +E SS  L+
Sbjct: 127 MLARLPGTTRTGGNLGDA-------------ALSLWQADVER-------YVLELSSFQLE 166

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
              ++G      +  NL  DH+D +   Q Y  AK R+F+    ++  A+I ADD   + 
Sbjct: 167 S--IEGFHPEVAALLNLSDDHLDRYNGLQGYLRAKARIFQRQTQRD-RAVINADDPALQP 223

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFPLPGEFQV 312
           V     +     +      + I                  +            + G    
Sbjct: 224 VRDILGHPSAPRVVPFSTQQVIKGGVYVQDGQLLDHRQMTQPAIPIMAIAEMRIQGRCNH 283

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA  AA + +  G   A V + L     +P R  +V        I             +
Sbjct: 284 ANAAAAAAIALEAGASHADVRQVLRDFPGLPHRMAWVRRMDGVTYINDSKGTNVG---AV 340

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
           L+ I +   G   VV   GG   +     +  +        I+      +E+     A +
Sbjct: 341 LEAIPSFPEG---VVLIAGGKAKKTDFSPLIPLLQKYVRHLIL--IGTATEE----MAAM 391

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +       +  +A++ A ++    + +++
Sbjct: 392 FQAVVPLQRATSMEDAVQIAQQVAQPGETVLL 423


>gi|17231604|ref|NP_488152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nostoc sp.
           PCC 7120]
 gi|30316088|sp|Q8YPS9|MURD_ANASP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|17133247|dbj|BAB75811.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nostoc sp. PCC
           7120]
          Length = 462

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 95/292 (32%), Gaps = 18/292 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I  A     L+      +  E SS+ ++      +      +T    DH+  H+T + Y+
Sbjct: 140 IGYAACEVALAEIPPDWIIGEMSSYQIESSVT--LAPHISIWTTFTPDHLARHKTLENYY 197

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K +L    L +    +   DDAY  ++              G +              
Sbjct: 198 DIKAKL----LRQSHLQVFNGDDAYLSKIGASHWPDAYWTSVQGKESLLGEKGFYIEDGW 253

Query: 288 KQQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +   +   +         + G   + N L+A        I    + + + +   V  R
Sbjct: 254 VVEQLPNSPPQRIVEASALRMVGAHNLQNLLMAVAAARLADISPNAIDKAVREFPGVAHR 313

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E + T      I    A   ++ E+ L ++++      +V+   G  +       + KI
Sbjct: 314 LEHICTWEGIDFINDSKATNYDAAEVGLASVKS-----PVVLIAGGEAKPGDDTAWLAKI 368

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
               + + ++    P      +   E+  G   +       +A+R ++E+  
Sbjct: 369 QAQTSAVLLIGSAAPAF---AQRLKEV--GYTHYEIVETMEKAVRRSLELAK 415


>gi|315185898|gb|EFU19663.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 117/379 (30%), Gaps = 43/379 (11%)

Query: 95  VDNTRKFLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           V  T +FLS  A                 ILAVTG+ GKS+ AS +  I   +   +   
Sbjct: 86  VPRTSRFLS-LARHVETDISLFLKACRSPILAVTGSKGKSTTASALHHILSAAFPGARLG 144

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLIA 206
           G               T SP+   + LS  +      V +E SS  L D           
Sbjct: 145 GNI-------------TTSPLTFLRELSEETP-----VVLELSSWQLGDLGGRISFTPQV 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            + TN+  DH + + + +AY   K  +     P ++  +  A D + + +          
Sbjct: 187 AALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQTF-LYPAFDPWGRWMAANTPATALP 245

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                          +             E         +PG     N L+A  +    G
Sbjct: 246 FFEERPTSPPPRAAFLTEQEGLFL-DHGKEIPLLPERLLVPGAHNRLNLLLAGAMAYTFG 304

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D AL+   L     +P R E V             A   +++   +           + 
Sbjct: 305 TDPALIRTRLSSFPGIPHRLELVREKGGVAFYNDSAATIPDAVLAAVSAFE-----CPVH 359

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADI--AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +   G D++    P  G     LAD    +   +   +     +  E   GI       +
Sbjct: 360 LITGGTDKNLDLSPYRG-----LADKPVTVYLLEGSATRRLLPLLEE--SGISYLGPYRS 412

Query: 445 RIEAIRTAIEMLNKQDVLV 463
             EA+  A    +  +V++
Sbjct: 413 LEEALAEAHHRASSGEVVL 431


>gi|239787357|emb|CAX83834.1| UDP-N-acetylmuramate--alanine ligase [uncultured bacterium]
          Length = 450

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 144/423 (34%), Gaps = 49/423 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKH 113
           GH     A+    + IV+SSA    +           PIL      + L           
Sbjct: 51  GHN--VSAVNSDCDYIVISSAILDDNVELQKAKMLGFPILK---RHQMLGEIIRGY---- 101

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV+G+ GK++  + +  +   +      I     +++F  +  L   S       
Sbjct: 102 --KTIAVSGSHGKTTTTAMMGALLTEAQYD-PLIINGGIVNAFGSNVSLGLGS-----WC 153

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           +        + ++++                I    TN+  +H+++ +TQ++   A  + 
Sbjct: 154 VVEGDESDGSFLNMQ---------------PIISVITNIDLEHMEFFKTQESLEKA-FQT 197

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F E        +   DD  +  V+K+  +                      I        
Sbjct: 198 FIENTSILGCTLACIDDPLAAVVIKKTPHHTIITYGESENSDIRLTALDKGITGSYFSVK 257

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +   +  +   P+ G+  V N+L   G    + +D   + E L+    V  RF   G   
Sbjct: 258 TRRKEYKNLFLPMMGKHNVLNSLAIVGAGEFLDLDEDTIRETLKNFQGVQRRFTIRG-TV 316

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA--LDLAD 411
                  DYAH    +E ++K+ +   + +I+ +      R    + ++ + A  LD+AD
Sbjct: 317 NSAVFVDDYAHHPREIETVIKSAKQYGATKIVAIVEP--HRYSRVKDLLHEYAPVLDIAD 374

Query: 412 IAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             I+       E+P +      I  ++           + IE I+T    L+   + +  
Sbjct: 375 DIILIPLYGAFEEPIEGVSSFAIAQQLSKPYCLVETFEDLIEQIKT---RLDPGTIFLFM 431

Query: 466 GKG 468
           G G
Sbjct: 432 GAG 434


>gi|170703053|ref|ZP_02893879.1| FolC bifunctional protein [Burkholderia ambifaria IOP40-10]
 gi|170132045|gb|EDT00547.1| FolC bifunctional protein [Burkholderia ambifaria IOP40-10]
          Length = 436

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     R
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHAAAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLR 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+   E++ A +   G+            +  EA R A
Sbjct: 351 HLAGEI-----DHWCVTDLPLPRAASAEQLEAALRKAGVEDGPDSSVTRFASPAEAFRDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|119944904|ref|YP_942584.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas ingrahamii 37]
 gi|189029023|sp|A1SU20|MURC_PSYIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119863508|gb|ABM02985.1| UDP-N-acetylmuramate--L-alanine ligase [Psychromonas ingrahamii 37]
          Length = 487

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 142/424 (33%), Gaps = 60/424 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA  +VVS+A +  +          I VV   R+   L+      +G      +AV+GT 
Sbjct: 78  GASVVVVSTAINADNPELLAAQQARIPVV---RRAEMLAELMRYRHG------VAVSGTH 128

Query: 125 GKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           GK++  S +  I  Q     +F IG    ++  ++    +R                   
Sbjct: 129 GKTTTTSLIASIYGQAQLDPTFVIGGLLNSAGTNAKLGQSRYLIAEADE----------- 177

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                     S     H    ++ +    TN+  DH+D ++            F + LP 
Sbjct: 178 ----------SDASFLH----LQPMVSVVTNIEADHMDTYEGNFEVLKDTFVRFIQNLPF 223

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
              A++  DDA  ++++ R                   +       N+ + ++    K  
Sbjct: 224 YGTAVVCLDDAVIEQLIPRFARQTVTYGFHEQADV--RISDFSQCVNRSEFSVHRINKPA 281

Query: 301 D-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--- 356
                 LPG+    NA  A  + +   ID   + + L +   +  RFE  G    G    
Sbjct: 282 MKIQLNLPGKHNALNAAAAIAVAMEDDIDDFSISKALNEFAGIGRRFEQYGEFETGRGKA 341

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAI 414
            +  DY H    ++  +   R     +  +V      R    R +    A  LA  D  +
Sbjct: 342 ILVDDYGHHPTEVQATIDAARAAWPDKR-LVMAYQPHRYTRTRDLYEDFAHVLAQVDQLL 400

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQDVLVVA 465
           + D     E P  I       +   I + +  E I  A          ++++  D+++  
Sbjct: 401 LLDVYAAGETP--IAGADSRSLCRTIRQRSGKEPIFVASPEVLPAMLAQIIDDGDLVLTQ 458

Query: 466 GKGH 469
           G G+
Sbjct: 459 GAGN 462


>gi|332141774|ref|YP_004427512.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551796|gb|AEA98514.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 443

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 108/374 (28%), Gaps = 35/374 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ------------------- 158
           + V GT+GK +    ++Q     G S              +                   
Sbjct: 67  ITVAGTNGKGTTCRLLEQAMLSQGKSVAVYSSPHLTDYRERVRYNGELPPANEFVKAFEF 126

Query: 159 ---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD 215
                + T   PI L        +      S E     L+     G+     +   +  D
Sbjct: 127 VEKSRKETEGDPITLTYFEFGTLAAMKMMQSWEVDVVILE----VGLGGRLDATNIIHPD 182

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
                     + +      E++  +++  +    +A   ++   +               
Sbjct: 183 LAIITTIDLDHQDWLGNTREKIAREKAGIMRKNGNAVVGDLFPPSSLYDVVNELQANVRW 242

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                      +  + +   +   +    P P       +   A L +   +    V+  
Sbjct: 243 ATQDFVTVVASDYSEWSWKGKNSSYA-SLPYPKIPLQNASTALAALELLELLPEEQVVRD 301

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           + K   +PGR E   T S    + VD AH   +   +   +      ++ +V G    +D
Sbjct: 302 IIKNTTMPGRQE---TISESPLVVVDVAHNPQATAEMQNWLNRYDVSKMRIVVGML--KD 356

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTA 452
           +     +  +A   AD  + +   PR  + E +   +++    I           A + A
Sbjct: 357 KSIAETLAPLAALNADWYVASTSGPRGCEAEVLENALVNAGTTIENIETFQTVTSAYQRA 416

Query: 453 IEMLNKQDVLVVAG 466
           +      ++++V G
Sbjct: 417 LADYQTGELILVFG 430


>gi|260434852|ref|ZP_05788822.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 8109]
 gi|260412726|gb|EEX06022.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 8109]
          Length = 469

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 78/237 (32%), Gaps = 22/237 (9%)

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV-EGKDFDFLFPLPGEF 310
           +   +++          +   +        +    ++             DF  P+ G  
Sbjct: 224 HDCPILQAHFQPTAWWSNQSAESVDFAALPLSLEGDRCVTRFYEAGHPVGDFTLPMAGLH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA  A   C   G+    ++E L  L     RF+  G   +G  I  DYAH  + ++
Sbjct: 284 NLSNATGALAACRMEGLPFDQLVEGLAGLKTPGRRFDLRG-TWKGRHIVDDYAHHPSEVQ 342

Query: 371 MILKNIRTIT----------SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN 419
             L+  R +             R++ VF       + ++ + G   AL   D+ ++    
Sbjct: 343 ATLEMARLMVRSGRSPLPTAPQRLLAVF-QPHRYSRTRQFLDGFAKALQNCDLLLLAPVY 401

Query: 420 PRSEDP------EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P  E P        +   +    P    +   N  +     I+   + D+++  G G
Sbjct: 402 PAGEQPLQGISSNALADRVRKLKPDLKIVVADNLDQLTELVIQQSRENDLVLAMGAG 458


>gi|262280495|ref|ZP_06058279.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|299768392|ref|YP_003730418.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
 gi|262258273|gb|EEY77007.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter calcoaceticus
           RUH2202]
 gi|298698480|gb|ADI89045.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. DR1]
          Length = 482

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 78/230 (33%), Gaps = 9/230 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E+M R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREIMPRVG 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAG 320
                               V     +   T+  +G++        PG   + NAL A G
Sbjct: 248 RPVITYGFNEDNDI--RAIDVEQDGMRSHFTVLRKGREPLRLTINQPGMHNILNALAAIG 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN---SRGGRIYVDYAHTSNSLEMILKNIR 377
           +    G+    +   L     V  RF+  G         ++  DY H    +E  +K  R
Sbjct: 306 VATDEGVSDDAISRALAGFSGVGRRFQVQGEFELADGNVKLVDDYGHHPKEVEATIKAAR 365

Query: 378 TITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP 425
                R +V+        + +       ++     D  ++ +  P  E P
Sbjct: 366 QSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ-VDQLLLLEVYPAGEKP 414


>gi|254899266|ref|ZP_05259190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes J0161]
 gi|254912594|ref|ZP_05262606.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes J2818]
 gi|254936921|ref|ZP_05268618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes F6900]
 gi|258609521|gb|EEW22129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes F6900]
 gi|293590586|gb|EFF98920.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes J2818]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 93/282 (32%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTTDDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|304389582|ref|ZP_07371544.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327135|gb|EFL94371.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 499

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 6/156 (3%)

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G    +G D +  +  L        R + VG    G RIY DY H    +   L+  
Sbjct: 317 GALGAAYVLGADLSQFIAALRTFSGADRRMQPVG-ERDGVRIYDDYGHHPTEIAATLQAA 375

Query: 377 RTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--I 432
           R +     ++V        +         ++   + D+ +      R E P        I
Sbjct: 376 RDLAGKGRLLVCFQPHLYSRTYHNVDAFARVFATVDDLTVCAVYAAR-EAPIPGVNGNII 434

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +       +   A   A       D L+  G G
Sbjct: 435 TEHLGKGTYVADMYAAGLHAFRAARPGDFLLFLGAG 470


>gi|85712532|ref|ZP_01043580.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
 gi|85693666|gb|EAQ31616.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
          Length = 489

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 139/425 (32%), Gaps = 56/425 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTS 124
           GA+ +VVSSA    +          I +V   R+   L+      +G      +AV GT 
Sbjct: 79  GADVVVVSSAIKPDNVELDAAQQQRIPIV---RRAEMLAELMRFRHG------IAVAGTH 129

Query: 125 GKSSVASFVQQIC-QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           GK++  S V  +  Q     +F IG    ++S   + RL +   +      S  S     
Sbjct: 130 GKTTTTSLVASVFAQAERDPTFVIG--GLLNSAGSNARLGSSKYLIAEADESDASFLH-- 185

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +    +        F   LP    
Sbjct: 186 ------------------LQPMVAVVTNIEADHMDTYGGDFSRLLDTYVDFLHNLPFYGL 227

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                   +             +       +  
Sbjct: 228 AVMCIDDPAVRELIPRVGRQ-AITYGFSEDADVRAVDYHQHQGQSHFKVLRDGHAPLNVS 286

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN---------SR 354
             LPG   V NAL A  +    GI+   +   L K   +  RFE+ G             
Sbjct: 287 LNLPGRHNVLNALAAVAVASDEGIEDDAIQRALNKFEGIGRRFEYHGECRVSGWSTETPD 346

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DI 412
           G  +  DY H  + ++  +K  R     +  +V      R    R +       L+  D 
Sbjct: 347 GVMVVDDYGHHPSEVDATIKAARQGWPDKR-LVMAFQPHRYSRTRDLYEDFVNVLSQVDT 405

Query: 413 AIVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVV 464
            ++ +     E P        +   I   G    I   +  +A+   I ++L   D+L+ 
Sbjct: 406 LLLLEVYGAGETPISGADSRSLCRSIRQRGQLDPIYVSD-TDALLEIIGDVLQPGDLLLT 464

Query: 465 AGKGH 469
            G G+
Sbjct: 465 QGAGN 469


>gi|240144189|ref|ZP_04742790.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|257203793|gb|EEV02078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
          Length = 454

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 99/302 (32%), Gaps = 25/302 (8%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +        +   T    E SS  L+            +  N+  DH+D H T +AY 
Sbjct: 144 IGIPYTSIVEKTTEQTVTVTEISSFQLETMETF--HPSVSAILNITPDHLDRHHTMEAYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  + +    +++  + Y +D   ++  +          S     + I+L++      
Sbjct: 202 RAKEGITKCQTKEDTCVLNY-EDEILRKFAETLKVNVLFFSSKRPLEEGIYLQENTIWIA 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            ++     +         L G     N + A+G  + +G    +V   L++   V  R E
Sbjct: 261 GKETE--RQRLIDVGELKLLGIHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVKHRIE 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM----G 403
           FV             A   ++    + +       R  ++ G G D++      +    G
Sbjct: 319 FVRDLHGVLYYNDSKATNPDAAIRGIGS-----MNRKTLLIGGGYDKNLEFDAWIESFDG 373

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           K+   L  +   T D        KI      HG    +      EA+     +    + +
Sbjct: 374 KVKCLL--LIGQTKD--------KIAVCARKHGFENIVCCDTLNEAVNICYRLAKPGEAV 423

Query: 463 VV 464
           ++
Sbjct: 424 LL 425


>gi|221638512|ref|YP_002524774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides KD131]
 gi|254766055|sp|B9KNJ5|MURD_RHOSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221159293|gb|ACM00273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides KD131]
          Length = 465

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 123/417 (29%), Gaps = 62/417 (14%)

Query: 67  GAEAIVVSS------AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           G   +V S              +  + +  P+   ++   F   FA+R +    +   ++
Sbjct: 66  GVALLVTSPGIPHLYPAPNPVIARAMAAGVPV--DNDIGLFFRSFATRDWDAFDQMPRVV 123

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG++GKS+  + +  I   +G  +   G            R      + L        
Sbjct: 124 CVTGSNGKSTTTALIHHILSEAGRPTQMAGNIGRGVLDLDPARDGEVVVLEL-------- 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                      SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  
Sbjct: 176 -----------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGG 222

Query: 239 PKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           P  +   +   +    A    V                +     +        + +    
Sbjct: 223 PDRAVIGVDEPEGLYLAGQLSVAPEDDRVIRISSGQKLERFGWSVFARKGFLAEWRKGRQ 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   D   +  LPG     NA  A   C  +G+    +   L     +P R + VG    
Sbjct: 283 MASIDLRAMPGLPGAHNHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKGG 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS------GRIIVVFGCGGDRDQGKRPIMGKIALD 408
              +    A   +S    L+    I            +V          K  ++G  A D
Sbjct: 343 VRFVNDSKATNVDSAAKALQAFPKIRWIAGGLGKDGGIVALQPHLGSVVKAYLIGHSARD 402

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            A     TD         +I   +   +    E+                 +V+++A
Sbjct: 403 FALQIGATD--------HEICETMERAVARAAEEA-------------QPGEVVLLA 438


>gi|254513897|ref|ZP_05125958.1| mur ligase family protein [gamma proteobacterium NOR5-3]
 gi|219676140|gb|EED32505.1| mur ligase family protein [gamma proteobacterium NOR5-3]
          Length = 566

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 17/152 (11%)

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR-DQGKRPIMGKIALDLADIA 413
           G    VD+AH    LE ++  I  + + R  ++ G  GDR D+  R      +    D  
Sbjct: 422 GATFLVDFAHNPAGLEALMPMIEGLPAKRRALITGQAGDRGDEDIRAFADASSSIHFDRI 481

Query: 414 IVT--DDNPRSE---DPEKIRAE--IIHGIPGFIEKGNRIE--AIRTAIEMLNKQDVLVV 464
            +   D + R     +   +  +  I  G        ++ E  A R A+  +   D++V+
Sbjct: 482 WLKRMDGHARGRAEGEVAALMRDAFIAQGHAAKSISLSKTELDATRAALRWVKPGDLVVL 541

Query: 465 AGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
               HE        + +  ++  + + + G I
Sbjct: 542 LS--HE-----KRDKTREFLEARVAKGVTGCI 566


>gi|169634770|ref|YP_001708506.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           SDF]
 gi|229470259|sp|B0VNZ8|MURC_ACIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169153562|emb|CAP02734.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter baumannii]
          Length = 482

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 121/379 (31%), Gaps = 46/379 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + I   A  +VVS+A   ++          I +V   R+   L       +G  
Sbjct: 73  GHE--AENIKN-ANVLVVSTAIDPENPEVKAAIEQRIPIV---RRAEMLGELMRYRHG-- 124

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S +  +        ++ IG                     +  
Sbjct: 125 ----IAVAGTHGKTTTTSLLTTMLAEENLDPTYVIGGLLN--------------STGVNA 166

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           AL             +AS           ++ +A   TN+  DH+D ++           
Sbjct: 167 ALGESRFIVAEADESDAS--------FLYLQPMAAIVTNIDADHMDTYEGSFDKLKDTFV 218

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DDA  +E++ R                      V     +   T
Sbjct: 219 QFLHNLPFYGLAVVCGDDANIREILPRVGRPVITYGFNEDNDI--RAIDVERDGMRSHFT 276

Query: 293 ISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G++        PG   V NAL A G+    G+    +   L+    V  RF+  G 
Sbjct: 277 VLRKGREPLRLTINQPGLHNVLNALAAIGVATDEGVSDEAISRALKGFSGVGRRFQVQGE 336

Query: 352 NSRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIA 406
              G        DY H    +E  +K  R     R +V+        + +       ++ 
Sbjct: 337 FELGEGNVKLVDDYGHHPKEVEATIKAARQSHPDRRLVMLFQPHRYSRTRDCFDDFIEVL 396

Query: 407 LDLADIAIVTDDNPRSEDP 425
               D  ++ +  P  E P
Sbjct: 397 SQ-VDQLLLLEVYPAGEKP 414


>gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 484

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 146/457 (31%), Gaps = 55/457 (12%)

Query: 31  NEVSS---DSRHIQAGWIFV---AI---VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQD 81
             VS    D   IQ G ++V   A+    G  +D    + +   +GA A+V+ +      
Sbjct: 36  TGVSYLPGD---IQPGHLYVQPSALSWGRGYDKD-RESLQRVKQRGARAVVLDA------ 85

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
             A +     + +  +T   L+             ++ VTGT GKS+    +  +  R G
Sbjct: 86  IPAEVPEGLSVYLAPDTSLALAQLGQAARALASHPLVCVTGTVGKSTTKRGLAILLARCG 145

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDG 201
            +       +           T   P     ++   SS    +   +A            
Sbjct: 146 RTHESQRNFNHYHGVTLTLADT---PKDTEFSVLEFSSDLPRYTLPKALIAA-------- 194

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
                   T +  DH D + T +A  + K  LF  L P+ +  +      +++       
Sbjct: 195 --PDVAVITEIQYDHTDCYPTLEAIADQKSLLFRGLKPEGTAVLNRDSPYFARMHAAARS 252

Query: 262 NAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
               RVL+ G      + L+      +  QV      +   +  PLPG   V N+L    
Sbjct: 253 YGAARVLTFGCSPLADVALQDCSRQRSGWQVRARCLDQSLTYTLPLPGRHDVRNSLAMLA 312

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG---GRIYVDYAHTSNSLEMILKNI- 376
             +A+G D    L     L  +P          +G     I   ++    SL   L+ + 
Sbjct: 313 GVVALGQDPNRCLAAFSALQPLPRHCALEHLAVQGGEVRLIDDSFSSNPASLRAALETLA 372

Query: 377 --RTITSGRIIVVFGCG---GDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRA 430
                + GR ++V G     G+R       +   I L   D       + R         
Sbjct: 373 LQAEGSPGRRLLVLGAIDELGERSDALHASLADLILLHRIDRVYAYGSHTRH-------- 424

Query: 431 EIIHGIPGFIEKGNRIEAIRT---AIEMLNKQDVLVV 464
                +P  +   +  EA       +  L   D LV+
Sbjct: 425 -TCAALPDHLVALHTTEARELTQVLMADLQPDDWLVL 460


>gi|197285916|ref|YP_002151788.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227356423|ref|ZP_03840811.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
 gi|229620052|sp|B4F110|MURC_PROMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194683403|emb|CAR44145.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227163533|gb|EEI48454.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
          Length = 487

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 136/424 (32%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSTAISADNPEIIAAREARIPVI-----RRAEMLAELMRYRHG------VAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I  ++GL    +     + S     RL                     
Sbjct: 128 HGKTTTTAMISNIYAQAGLDPTFV-NGGLVKSAGTHARLG----------------CSRY 170

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            ++    S     H    ++ +    TN+  DH+D +             F   LP    
Sbjct: 171 LIAEADESDASFLH----LQPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   + ++ +                 I   +         ++   +  D D +
Sbjct: 227 AVMCIDDDVIRSIIPKVGRYITTYGFSEDADVRITHYEQKGAQGFFTIS-REDMPDLDVV 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI    +L  L        RF+F+G  S          
Sbjct: 286 LNAPGRHNALNATAAVAVATEEGIADEHILAALLNFQGTGRRFDFLGNFSLEHVNGQEGE 345

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + +V+        R +        +     DI 
Sbjct: 346 VMLVDDYGHHPTEVDATIKAARAGWPDKRLVMLFQPHRYTRTRDLYEDFATVLNQ-VDIL 404

Query: 414 IVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVA 465
           ++TD     E P        +   I   G    I   +    I + +  +L   D+++V 
Sbjct: 405 LLTDVYAAGEAPIPGADSRSLCRTIRQRGKLDPIWVSDVEN-ISSILAGVLTDNDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|82703030|ref|YP_412596.1| FolC bifunctional protein [Nitrosospira multiformis ATCC 25196]
 gi|82411095|gb|ABB75204.1| FolC bifunctional protein [Nitrosospira multiformis ATCC 25196]
          Length = 442

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/392 (14%), Positives = 109/392 (27%), Gaps = 45/392 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----------AQDNR 161
           +    I++V GT+GK S    ++ I   +G           +             + D  
Sbjct: 43  EPSFPIISVAGTNGKGSTCMMLEAILSHAGYRVGCYTSPHLLRYNERVRIDRKEASDDEL 102

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEA----SSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                 +  A+  S +S       ++ A    S   ++   L+          N+     
Sbjct: 103 CEAFRAVESARMNSAVSLTYFEFGTLAAMYLFSQAEVEVAILEVGLGGRLDAVNVFEADC 162

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               +        +    E +  E   I  +  A      +       R  +       +
Sbjct: 163 AVLTSVDFDHMDYLGNTREQIGFEKAGIFRSGKAAICS--EPDLPISVRRHAESIGADLM 220

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           H+ +        Q        +     P P     Y    A+    A+      +   L 
Sbjct: 221 HIGEHFGYSTAPQSWSYWRNGESRHALPYPALRGAYQLKNASACLAALDSLKDTLPVTLS 280

Query: 338 KLHV------VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGC 390
            +         P RF+ +          +D AH   +   +  ++ ++    R   VF  
Sbjct: 281 DIRHGLLEVVWPARFQVLPGQPV---RVLDVAHNPGAARALAASLDSMGRYPRTYAVFAM 337

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII------------HGIP 437
            GD+D      + +      D+ +V+  D PR    ++   ++              G  
Sbjct: 338 LGDKDI---AGVVRELRSSVDVWLVSGIDAPRGATADEAATQVAQALQIAEPLPGNAGEG 394

Query: 438 GFIEKG---NRIEAIRTAIEMLNKQDVLVVAG 466
                    N  EA   A E   + D + V G
Sbjct: 395 AAHTIRKFRNPSEAYAYACEQAARNDRICVFG 426


>gi|68249685|ref|YP_248797.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 86-028NP]
 gi|260581815|ref|ZP_05849611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|81174949|sp|Q4QLG0|MURD_HAEI8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68057884|gb|AAX88137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           influenzae 86-028NP]
 gi|260095008|gb|EEW78900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|309973397|gb|ADO96598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2846]
          Length = 437

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 121/394 (30%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLET--TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAEVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +    +                          +  K +V +  E              
Sbjct: 215 KLTFGEGENQARQTVSFAENSADYWLKTENGKQYLMVKDEVILPCEEVTLVGRHNY---- 270

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A+GI+   +   L     +  RF+ V   +    I    A    S  
Sbjct: 271 --MNILAATALAQAVGINLDSIRTALRHFKGLDHRFQLVHQANGIRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R         
Sbjct: 329 AALAGL--YIEGKLHLLLGGDG-----KGADFSELAELINQPHIICYCFGRDGV------ 375

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 376 QLAKFSSQSYLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|238750103|ref|ZP_04611606.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia rohdei ATCC 43380]
 gi|238711647|gb|EEQ03862.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia rohdei ATCC 43380]
          Length = 461

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 103/356 (28%), Gaps = 28/356 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  V  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAVAGTHGKTTTAGMVAWILEACGYEPGFV-IGGVPGNFNVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDLKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC             L +  +        
Sbjct: 202 KQFHHLVRIVPGKGKIIVPDNDNHLKQVMAMGCWSEQELVGETGSWLARKVSTDASVFEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 LLDNELVGEVSWSLVGEHNMHNGLMAIAAARHVGVLPADACRVLGDFINARRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG--KIALDL- 409
           + G  +Y D+AH   ++   L  +R+   G    +      R    +  M   ++A  L 
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTAR-ILAVLEPRSNTMKLGMCKNELAPSLG 379

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD   +         P ++       I       +    +   ++     D ++V
Sbjct: 380 RADEVFLFQPQH---IPWQVVEVAEACIQPAHWSADIDTLVDMVVKTAQPSDHILV 432


>gi|300774447|ref|ZP_07084310.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
 gi|300506262|gb|EFK37397.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 64/221 (28%), Gaps = 4/221 (1%)

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
              SF NL  D      T   + +               A +   D             G
Sbjct: 170 YDRSFLNLSPDWAVVTSTDADHLDIYGDKSHIEEGFRQFAALVPQDKQLFIRKGLEIGRG 229

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            +  +V     +                 +      DF++ +PG   V NA  A  +   
Sbjct: 230 HQTYAVNEPADYYSDNLRMDHDKIYFDFHTPTETVKDFVWEIPGIHNVENATAALAILHN 289

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           +G D   + + +     +  R+        G     DYAH    +  ++ +IRT    + 
Sbjct: 290 LGADFDTLKKAISNFKGIKRRY-TKHIYQNGKIYIDDYAHHPTEINAVMSSIRTFYPDKK 348

Query: 385 IVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
           ++V        R +       +     AD  I+ D  P  E
Sbjct: 349 LLVAFQPHLFSRTRDFADGFAESLSK-ADELILLDIYPARE 388


>gi|323706122|ref|ZP_08117691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534566|gb|EGB24348.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 454

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 94/280 (33%), Gaps = 20/280 (7%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K +  +  N+  DH++ H+T + Y         E    +   ++ 
Sbjct: 163 EISSFQLET--IKEFKPVISAIINITPDHLNRHKTLENY-IEIKGRIFENQTADQFTVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD     + K+A                 +L+    I +      ++   +  +   +P
Sbjct: 220 YDDKNISSLFKKAKCNVFPFSRNRALEYGTYLENGKIIISANGEKSTIIDIEDIY---IP 276

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NA+VA+ +    GID  ++ E L     V  R EFV   +             +
Sbjct: 277 GNHNVENAMVASTMAYLAGIDIKVISETLRTFKGVEHRIEFVRNVNGVKYYNDSKGTNPD 336

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++ ++       I++   G D+              +  + ++       E  + 
Sbjct: 337 AAIKAIEAMKG-----PIILIAGGYDKGVSFDEFTASFKGRVKKLILL------GETKDL 385

Query: 428 IRA-EIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I    I  G      I   +  +A+  A       D +++
Sbjct: 386 IYKSAIKEGYSEDDVIFVESIDDAVYAAYNAAKPGDNVLL 425


>gi|307825590|ref|ZP_07655808.1| FolC bifunctional protein [Methylobacter tundripaludum SV96]
 gi|307733476|gb|EFO04335.1| FolC bifunctional protein [Methylobacter tundripaludum SV96]
          Length = 423

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 107/400 (26%), Gaps = 34/400 (8%)

Query: 91  PILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
           P+++     +   +F +          + V GT+GK S  ++++ I    G         
Sbjct: 19  PLVIDLGLERAAQVFHALNPNYVKPPTITVAGTNGKGSSVAYLESIYTAQGYRVGSYTSP 78

Query: 151 STISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG----LDQ---------- 196
             +    +      P                  + S+     G    LD           
Sbjct: 79  HILKYNERIKIDGKPVSDDKICEAFARIESVRGNTSLSYFEFGTLAALDIFQRAGVDVQL 138

Query: 197 ------HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                  RLD + ++      +    ID+ +       A  R    +     PAI    D
Sbjct: 139 LEVGLGGRLDAVNIVDPDVALITSISIDHIEWLGGTREAIGREKAGIFRAAIPAITGDPD 198

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                +                                +++    E              
Sbjct: 199 PPESLMQSAVEQHALLYCIDKDFSYKKRATGWDWFFADRKMLQLPEPGLKGEH----QYH 254

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
                ++A      I   +   +        + GRF+ +        + +D  H   ++ 
Sbjct: 255 NASAVILAVTKMAEILPVTEASIRQGLANVRLAGRFQLIDGEIP---VLLDVGHNPQAVR 311

Query: 371 MILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
            +   + T+  GR I  VF    D+D      +    +   D       NPR+   E + 
Sbjct: 312 TLADYVTTVFPGRRIHAVFSMMKDKDIAGVLEIMNFVV--YDWFFAPLANPRA-ASESVM 368

Query: 430 AEIIH--GIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAG 466
            EI     +        +  EA   A     + D+L+V G
Sbjct: 369 REIFSQSSVSNVSFGFADFTEAFSAAKNQSQQGDLLLVFG 408


>gi|260598735|ref|YP_003211306.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Cronobacter turicensis z3032]
 gi|260217912|emb|CBA32494.1| Bifunctional protein folC [Cronobacter turicensis z3032]
          Length = 422

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 16/128 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V    R   I +D AH  ++   + + +    S GR++ V G   D+D      
Sbjct: 287 PGRFQIVSEAPR---IILDVAHNPHAAGYLAQRLEQSPSAGRVLAVIGMLHDKDIA---- 339

Query: 402 MGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            G +A    + D       D PR         E+   +       +  +A   A+     
Sbjct: 340 -GTLACLERVVDSWYCAPLDGPRG----ARAEELAEHLQASAVFDSVAQAWHAALADAQP 394

Query: 459 QDVLVVAG 466
            D ++V G
Sbjct: 395 ADTVLVCG 402


>gi|255021544|ref|ZP_05293587.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968932|gb|EET26451.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 460

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 108/368 (29%), Gaps = 43/368 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             ILAV GT GK++  S +  I + +G    F IG        +          I   + 
Sbjct: 103 RWILAVAGTHGKTTTTSMLAWILEYAGLAPGFLIGGAPRNFPESGRLGSGPFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V          + R   +  +     ++  D             A +  
Sbjct: 163 DTAFFDKRAKFVHY--------RPRTVILNHLEYDHADIYPD------------LAAIET 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  PA            ++R    GC   ++ +        K+          +
Sbjct: 203 QFHYLLRTVPANGQVLYRSGIPALERVLARGCWSEAIPFADGADWDLKLEDPAGSAWQIL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + L G F   N L A      +G+  A     L     V  R E  G   
Sbjct: 263 EDGRAVGQVEWDLYGRFNAENGLAAILAARHVGVPVASSCAALAHFAGVRRRLEERG-RV 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIM--GKIALDL- 409
              R+Y D+AH   ++   L+ +R     GR++ V      R    R  +  G++A  L 
Sbjct: 322 ADIRVYDDFAHHPTAIAATLRALRARQPHGRLLAVLEP---RSNTMRLGVHRGQLAESLA 378

Query: 410 -ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAGK 467
            AD   V         P  +  ++   +        +    +          D ++V   
Sbjct: 379 AADAVFVYA-------PPDLSWDVAAALGQPERVFSDLDMLVDAVATSARPGDHILVMSN 431

Query: 468 G-----HE 470
           G     HE
Sbjct: 432 GGFGGIHE 439


>gi|325109140|ref|YP_004270208.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces brasiliensis
           DSM 5305]
 gi|324969408|gb|ADY60186.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces brasiliensis
           DSM 5305]
          Length = 495

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 111/373 (29%), Gaps = 40/373 (10%)

Query: 54  EDGHLFIPQAIAQGAEA--------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
             GH          A A        ++ S A    +           L+V    + L   
Sbjct: 72  FHGH----------AAAHLPENTDVVIHSLAIPADNPEMRAAVEQGCLIVS-YAQALGRL 120

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           + ++        +AV GT GK++ +S +  I   +G +              Q+  +++ 
Sbjct: 121 SEQIP------TVAVAGTHGKTTTSSLLSHILSTAGCAHQL--VNGGRFLHTQEKAISSE 172

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
            P +L           +      A         L  ++             +       +
Sbjct: 173 KPDWLVAESCEFRRSFLEISPKIA--------ILLSVEADHFDCYPDEATLVAAFADFCS 224

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              ++ +L        +     A D        R  +A     ++        +      
Sbjct: 225 RMPSEGKLLVNAACPRALRAAQAADCSIICFDTRDVSARASTNAIDEATHTWTVGNPIQT 284

Query: 286 HNKQQVTISV-EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           HN  +  +   + +      PL GE Q+ NA+ A    +  G++    +  +E    V  
Sbjct: 285 HNGVEFELQYGDQQPHACRLPLSGEHQISNAIAAIAAAVECGVELKQAVLAVESFPGVER 344

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RF+  G       +  DYAH    +   +   R      ++ V        + +R +M +
Sbjct: 345 RFQLRG-RYADWLLLDDYAHHPTEIRATISAARERFPDYLLTVAFQPHQIQRTER-LMSE 402

Query: 405 IAL--DLADIAIV 415
            A    LAD   V
Sbjct: 403 FADALRLADRVFV 415


>gi|306818516|ref|ZP_07452239.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           mulieris ATCC 35239]
 gi|304648689|gb|EFM45991.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           mulieris ATCC 35239]
          Length = 505

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/428 (16%), Positives = 133/428 (31%), Gaps = 43/428 (10%)

Query: 60  IPQAIAQGAEAI-VVSSAYSLQDFSATIRSNTPILVVD------NTRKFLSLFASRLYGK 112
             QA+  GA  +   S         A + +   + +V       N    LS  A+ ++ +
Sbjct: 46  ARQAL--GASGVAFCSLVGEENQAQAAVEAGHKLFIVSPGIPPHNPLYRLSAVAAPVWSE 103

Query: 113 HP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +    ++             + +          +            TP      
Sbjct: 104 VELAWQIQQESSNRGCKWLCITGTNGKTTTTGMLAQMLITGGVVATAVGNYGTP------ 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +  ++   V  ++VE SS  L  H    ++  A  + N   DHID+H +   Y     
Sbjct: 158 -IVQVVAEGAVDALAVELSSFQL--HSTFSVQPWASVWLNFAPDHIDWHGSADEYAW--- 211

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
              +     +  A     +    +V+ ++     R+  +           V       + 
Sbjct: 212 DKSKIYRGVQHAAFYPVTEELPTKVLAQSGLPPERIFGLTPGIPQPGFLGVIDDVLVDRA 271

Query: 292 TISVEGK-----------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             S   K           +     P P    + + L AAGL  A G+    V   + +  
Sbjct: 272 FTSDPAKQALELARFADLEHLTGQPTPTSAILQDTLAAAGLARAYGLQPVWVQRGIREFE 331

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           +   R   VG       I    A  +++    L+++          V+  GGD       
Sbjct: 332 LEHHRRAPVGVFDGVSYIDDSKATNTHAAAASLRDVAD-----KHAVWIVGGDPKGQDFH 386

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGN--RIEAIRTAIEMLN 457
            + K+       A++   +P  E   +  A+   GIP   IE G+      ++ A +   
Sbjct: 387 QLVKLVAPKVKAAVLIGLDP--EPFRQAFAQNAPGIPLKRIEPGDNLMERTVKAATDFAA 444

Query: 458 KQDVLVVA 465
             DV+++A
Sbjct: 445 SGDVVLLA 452


>gi|257125000|ref|YP_003163114.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
 gi|257048939|gb|ACV38123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 113/354 (31%), Gaps = 51/354 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A +   K    I++ TGT+GK++ ++ + ++   SG  +   G      +    +   
Sbjct: 81  DLAYKYVDK-NVKIISFTGTNGKTTTSTKMAELLNFSGFRAKLAGNAGFSFAKLVADE-- 137

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                           + + ++ +E SS+ L+ +    I        NL  DH+  + + 
Sbjct: 138 ----------------EKLDYIVLELSSYQLENN--PQIHSNIAGIINLTPDHLTRYNSV 179

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y+  K  +F++ +  +  A+I  DD   +++ +R            Y           
Sbjct: 180 EDYYITKFNIFDKQVESD-FALINLDDKEFEKLYERNEIKEKIKSKKIYLSTETKGTIFV 238

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGE-----------------FQVYNALVAAGLCIAIG 326
             ++   +    +  D    F    +                   + N L   G    + 
Sbjct: 239 YKNDICIMKDFKKRIDEIENFDENVDKVSEILMKTDELSLKGKHNLENMLFLIGSAKILN 298

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I +  + E L+    +  R E          I         S    + +         I+
Sbjct: 299 ISNEKISEFLKSTVALEHRLENFFIKGNTIFINDSKGTNVESTLKAIDSFD-----NSII 353

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +   G D+     P++ +I    AD   +  DN      + +  ++   G   +
Sbjct: 354 MILGGDDKKIDNMPLIERIKEK-ADFVYLIGDN-----AQILIDDMEKIGYKNY 401


>gi|307700915|ref|ZP_07637940.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           mulieris FB024-16]
 gi|307613910|gb|EFN93154.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           mulieris FB024-16]
          Length = 505

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/428 (16%), Positives = 133/428 (31%), Gaps = 43/428 (10%)

Query: 60  IPQAIAQGAEAI-VVSSAYSLQDFSATIRSNTPILVVD------NTRKFLSLFASRLYGK 112
             QA+  GA  +   S         A + +   + +V       N    LS  A+ ++ +
Sbjct: 46  ARQAL--GASGVAFCSLVGEENQAQAAVEAGHKLFIVSPGIPPHNPLYRLSAVAAPVWSE 103

Query: 113 HP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                 +    ++             + +          +            TP      
Sbjct: 104 VELAWQIQQESSNRGCKWLCITGTNGKTTTTGMLAQMLITGGVVATAVGNYGTP------ 157

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +  ++   V  ++VE SS  L  H    ++  A  + N   DHID+H +   Y     
Sbjct: 158 -IVQVVAEGAVDALAVELSSFQL--HSTFSVQPWASVWLNFAPDHIDWHGSADEYAW--- 211

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
              +     +  A     +    +V+ ++     R+  +           V       + 
Sbjct: 212 DKSKIYRGVQHAAFYPVTEELPTKVLAQSGLPPERIFGLTPGIPQPGFLGVIDDVLVDRA 271

Query: 292 TISVEGK-----------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
             S   K           +     P P    + + L AAGL  A G+    V   + +  
Sbjct: 272 FTSDPAKQALELARFADLEHLTGQPTPTSAILQDTLAAAGLARAYGLQPVWVQRGIREFE 331

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
           +   R   VG       I    A  +++    L+++          V+  GGD       
Sbjct: 332 LEHHRRAPVGVFDGVSYIDDSKATNTHAAAASLRDVAD-----KHAVWIVGGDPKGQDFH 386

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGN--RIEAIRTAIEMLN 457
            + K+       A++   +P  E   +  A+   GIP   IE G+      ++ A +   
Sbjct: 387 QLVKLVAPKVKAAVLIGLDP--EPFRQAFAQNAPGIPLKRIEPGDNLMERTVKAATDFAA 444

Query: 458 KQDVLVVA 465
             DV+++A
Sbjct: 445 SGDVVLLA 452


>gi|225374476|ref|ZP_03751697.1| hypothetical protein ROSEINA2194_00091 [Roseburia inulinivorans DSM
           16841]
 gi|225213714|gb|EEG96068.1| hypothetical protein ROSEINA2194_00091 [Roseburia inulinivorans DSM
           16841]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 131/426 (30%), Gaps = 67/426 (15%)

Query: 95  VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
           ++N    L     RL       I+ + GT+GK S  ++++++   +G    +    +   
Sbjct: 25  IENLMHELGDIQERL------KIIHIAGTNGKGSTGAYLERVLIEAGYRVGRYSSPAVFD 78

Query: 155 SFAQDNRLTTPSPIY--------LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                                  +  A   +  +G+ H ++      +        K   
Sbjct: 79  PMEVWRINLQSMSHEEYADIMEQVKCACDRMVEKGMEHPTIFEVETAMAFLYFYQKKCDY 138

Query: 207 ----------GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                        TNL +  +    T  +  + +          ++ A I   D     +
Sbjct: 139 VLLEVGMGGRTDATNLIKKPVCSVITSVSMDHMQFLGNTLTEIAQAKAGIIKKDCPVVTI 198

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV---TISVEGKDFDFLFPLPGEFQVY 313
           +++A            Q   ++   V  +  + +                  L G +QV 
Sbjct: 199 LQKAEAMEAIEAEAEKQHARLYTADVSKVTVETETLKEIRFDHPGLGTVTTQLTGTYQVE 258

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N  +A  +   +   +  ++    +  V PGRFE +G         +D AH  ++   + 
Sbjct: 259 NCCLAVTVLKEVLGIADRIIIDGIRNTVWPGRFEIIGEQPL---FIIDGAHNEDAALQLS 315

Query: 374 KNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPR---------- 421
            ++    +   I  + G   D++  K   + +  L  A     VT DNPR          
Sbjct: 316 ASVEKYFTNIPITYIIGVLADKEHKK---VLEAMLPYAGAVFTVTPDNPRAMRAEELASE 372

Query: 422 ---------------------SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
                                +E+  +    +   +P      +  EA++ A+E   K  
Sbjct: 373 AEAIVARLWKKRAGKPEKVQGTENSPQGAGGMEP-LPKVSACSSMKEAVQLALEHTKKDG 431

Query: 461 VLVVAG 466
           V++  G
Sbjct: 432 VILAFG 437


>gi|16804075|ref|NP_465560.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes EGD-e]
 gi|224501164|ref|ZP_03669471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL R2-561]
 gi|30316084|sp|Q8Y5M1|MURD_LISMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16411506|emb|CAD00114.1| murD [Listeria monocytogenes EGD-e]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 94/282 (33%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +  +  + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQIADDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|310287102|ref|YP_003938360.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium bifidum S17]
 gi|309251038|gb|ADO52786.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium bifidum S17]
          Length = 529

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 103/433 (23%), Gaps = 42/433 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ +V SSA    +            I+   +    L          +    + V G 
Sbjct: 87  RGADTVVYSSAIKPDNPEIVAAHERGIRIVHRSDILALL---------MNGRRAVTVAGA 137

Query: 124 SGKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            GK++ +S +  I   +G       S    G          D        + +A+A    
Sbjct: 138 HGKTTTSSLLSHILVHAGTGKLADPSYAIGGTIQAPGRAVLDGGHAGRGDVLVAEADESD 197

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S      S+   ++ L  H              +               +         
Sbjct: 198 GSFCKYRPSIAVITNALADHLDHYGDEAHYCAAFVDHAGHASGHVVMTGDDEGAVAVLRD 257

Query: 238 LPK---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           L         +    DA     ++ A                                  
Sbjct: 258 LDPSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSGRETFTVHVPASLASVCGCG 317

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG     NA  A    + +G+      +          RF+  G  + 
Sbjct: 318 DADLALPVSLAVPGMHNARNATAAILAAMLLGVTPEAAAQAASTFLGASRRFQVRGEEN- 376

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
           G  +  DYAH    +  +L   R      +I V        R +       +     AD 
Sbjct: 377 GVTVVDDYAHHPTEISALLDAARRRYPRSVIRVLFQPHLFSRTRTFAHEFAEALSK-ADD 435

Query: 413 AIVTDDNPRSE--------DPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEM 455
            IVT   P  E            I  +    +P               +   A +     
Sbjct: 436 VIVTGIFPARELQRDFPDVSAMTIV-DAAQDVPHASAQGDGTWISAVDDMQVAAQMLAMR 494

Query: 456 LNKQDVLVVAGKG 468
               DV+   G G
Sbjct: 495 CRPTDVVFTVGAG 507


>gi|296101007|ref|YP_003611153.1| putative ligase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055466|gb|ADF60204.1| putative ligase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 457

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 95/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVVAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K   +   +    
Sbjct: 203 QFHHLVRIVPGQGRIILPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLNVDASEWEVW 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWGLVGEHNMHNGLMAIAAARHVGVQPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RI+ V        +     MG    DL  
Sbjct: 322 HGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       I       +        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPQH---IPWQVAEVADACIQPAHWSADVDALADMVVKAAQPGDHILV 432


>gi|238927325|ref|ZP_04659085.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas
           flueggei ATCC 43531]
 gi|238884607|gb|EEQ48245.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas
           flueggei ATCC 43531]
          Length = 469

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 89/280 (31%), Gaps = 18/280 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ ++            +  N+  DHI  H + + Y  A           E   ++ 
Sbjct: 178 EISSYQMEA--TTHFHAHIVAELNITPDHIVRHGSMEVYQ-AMKEKLFAAQTAEDYLVLN 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD +++ + +RA   G   L    +                +   +           +P
Sbjct: 235 ADDPHTRGMAERAA--GRVCLFSRREELAEGACVRADGMIVIRWDGAEHVLIPADELGIP 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A+ + +  G+  A +   L     V  R EFV   +         A  ++
Sbjct: 293 GAHNVENVLAASAMALFAGVTPAEMRPVLRAFKGVEHRIEFVRALAGVSYYNDSKATNTD 352

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L+           ++   GGD          ++     D  I+            
Sbjct: 353 SAIKALEAFDGH------IILIAGGDDKLTDLGEFMELVHARVDELILV----GDAAERF 402

Query: 428 IRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVV 464
             A    GIP         +  +A++ A E+  +  ++++
Sbjct: 403 AAAARDAGIPEAQIHRVGYHMEKAVQLARELAAEGQIVLL 442


>gi|123965256|ref|YP_001010337.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123199622|gb|ABM71230.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 469

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 91/292 (31%), Gaps = 24/292 (8%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             N    +I                 +E+L         +         K          
Sbjct: 178 TINNYTSNIGIINNIDFDHCDHYSNIDEILSSFKQFASNSKKLLINYDCKITRENFTSHN 237

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNALVAAGLCIA 324
               + K      +      + +TI    +  DF      P+PG   + N   A   C  
Sbjct: 238 QWSIKEKNNITYSIIPNTINKDITIGKYYEHGDFVDSINIPIPGLHNLSNITAAIAACRM 297

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI----- 379
           IG+    + ++++ L +   RFEF G  ++    Y DYAH  N ++  +   R       
Sbjct: 298 IGVSFKEIKKNIKSLELPKKRFEFRGELNQ-RVFYDDYAHHPNEIKATIDLARLFIIDNN 356

Query: 380 ----TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVT------DDNPRSEDPEKI 428
                 GR+I +F      R +       +     AD+  +T      ++N  + + + I
Sbjct: 357 INKNQKGRLIAIFQPHRFTRVKQFIHEFVQELSK-ADVIYLTNIFGAGEENIDNINSQVI 415

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG--HETVHIVTNG 478
              I           N  E      ++  + D ++  G G  H+   I+ N 
Sbjct: 416 ANLIYKKNKNVTCLKNNYEIKDKFFKLTKENDFILNMGAGDCHKLWSILNNK 467


>gi|258627104|ref|ZP_05721900.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio mimicus
           VM603]
 gi|258580622|gb|EEW05575.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio mimicus
           VM603]
          Length = 421

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 109/371 (29%), Gaps = 28/371 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +        P  + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINGQDLPDEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                        VS+     G    L   +   + ++       GR             
Sbjct: 106 TQAFAHIEHQRGEVSLSLFEFGTLAALYLFQQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNAL----VAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +     + E                  +L     A  L         +    + +     
Sbjct: 226 QFSYEKTSETTWHWRSGRFELTDLPIPSLPLPNAATALMALGCSGLEISDIDIVEGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   SR   I +D AH  +S   +++ ++     + I +V G   D+D       
Sbjct: 286 QLAGRMQVISREPTIVLDVAHNPHSAHYLVEQLKQRYPHQTIHLVLGMLHDKD------- 338

Query: 403 GKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
             IA  +A++  V           PR+   E++   +  G   +    N + A   A+  
Sbjct: 339 --IASTVAELKPVVSHWYPASLSGPRAATAEQLCQYLPAGNTQY---ANPVAAFEAALTQ 393

Query: 456 LNKQDVLVVAG 466
            +  DV+VVAG
Sbjct: 394 TSAHDVIVVAG 404


>gi|323967756|gb|EGB63168.1| FolC protein [Escherichia coli M863]
 gi|327252586|gb|EGE64245.1| bifunctional protein folC [Escherichia coli STEC_7v]
          Length = 422

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 112/386 (29%), Gaps = 42/386 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            + A     K    +  V GT+GK +    ++ I   +G           +    +    
Sbjct: 37  QVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQ 96

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
               P     A           +S+       +   L  + L   +  ++    +     
Sbjct: 97  GQELPESAHTASFAEIESARGDISLTY----FEYGTLSALWLFKQAQLDVVILEVGLGGR 152

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       +                D  S    K       +   VG       +  V
Sbjct: 153 LDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRNEKPAIVGEPEMPSTIADV 212

Query: 283 --------CAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGID 328
                        +   ++S     F          PLP   Q   A   A L  +    
Sbjct: 213 AQEKGALLQRRGVEWNYSVSDNDWTFSDAHGTLENLPLPLVPQPNAATALAALRASGLEV 272

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
           S   +       ++PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V
Sbjct: 273 SENAIRDGIASAILPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAV 329

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFI 440
            G   D+D         IA  LA +  V DD        PR         +++  +    
Sbjct: 330 IGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGK 376

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +  +A   A+     +D ++V G
Sbjct: 377 SFDSVAQAWDAAMADAKAEDTVLVCG 402


>gi|315655254|ref|ZP_07908155.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
 gi|315490509|gb|EFU80133.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           51333]
          Length = 499

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 6/164 (3%)

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NA  A G    +G+D    +  L        R + VG    G RIY DY H    
Sbjct: 309 QHMLLNAGGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVG-ERDGVRIYDDYGHHPTE 367

Query: 369 LEMILKNIRTI-TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +   L+  R +   GR++V F      R         ++   + D+ +      R E P 
Sbjct: 368 IAATLQAARDLAGKGRLLVCFQPHLYSRTYHNVDAFARVFATVDDLTVCAVYAAR-EAPI 426

Query: 427 KIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  I   +       +   A   A       D L+  G G
Sbjct: 427 PGVNGNIITEHLGKGTYVADMYAAGLHAFRAARPGDFLLFLGAG 470


>gi|299147129|ref|ZP_07040196.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_23]
 gi|298515014|gb|EFI38896.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 3_1_23]
          Length = 458

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 108/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQSHVECTAF-LGGISKNYGTNLLLSQASPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T+   DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMTV-------------------ITSTDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDF-KL 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
            +       DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 323 KNDRIVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+++L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEEIL 425


>gi|148259085|ref|YP_001233212.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium cryptum JF-5]
 gi|326402236|ref|YP_004282317.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium multivorum
           AIU301]
 gi|166222949|sp|A5FUL1|MURC_ACICJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146400766|gb|ABQ29293.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium cryptum JF-5]
 gi|325049097|dbj|BAJ79435.1| UDP-N-acetylmuramate--L-alanine ligase [Acidiphilium multivorum
           AIU301]
          Length = 479

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 135/435 (31%), Gaps = 64/435 (14%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGK 112
           GH     A   G A+ +VVS+A    +          I VV   R+   L       +  
Sbjct: 59  GHD----AANLGNAQVVVVSTAVPRDNPEVQAARKRMIPVV---RRAEMLGELMRLRWS- 110

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+ GT GK++  S V  + + +GL    I     I+++  + RL          
Sbjct: 111 -----VAIGGTHGKTTTTSLVAAVLEGAGLDPTVI-NGGIINAYGTNARLGGGD------ 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VEA        RL  +       TN+  +H+D+  + +A   A  R
Sbjct: 159 -----------WMVVEADESDGSFLRLPAVI---AVVTNMDPEHLDHWGSAEAME-AGYR 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------FIHLKKVCAIH 286
            F   +P    A++  D    + ++    +       +  Q                   
Sbjct: 204 QFVSNIPFYGFAVLCIDHPGVQRMIPDLSDHRLITYGLSPQADVRAERIMSDRNGATFEV 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              +     E        P+ G   V NAL A  + I + +    +   L     V  RF
Sbjct: 264 RLSERVAGRERVLAPMRLPMLGNHNVQNALAAIAIGIEMEVPEVDLRAALASFRGVKRRF 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              G    G  +  DY H    +  +L+  R   +  +I V          +   +  + 
Sbjct: 324 TKTG-EVAGITVIDDYGHHPVEIAAVLRAARQAGARDVIAVV------QPHRYTRLATLF 376

Query: 407 LDLAD------IAIVTDDNPRSEDPE-KIRAEII------HGIPGFIEKGNRIEAIRTAI 453
            D           IV D  P  E+P   I  + +       G    +  G+         
Sbjct: 377 EDFCTCMNDAGKVIVADVYPAGEEPIPGIDRDALVEGLRARGHKSVVSLGSPDHLAEMIN 436

Query: 454 EMLNKQDVLVVAGKG 468
            M    D +V  G G
Sbjct: 437 AMARAGDYVVCLGAG 451


>gi|242279656|ref|YP_002991785.1| FolC bifunctional protein [Desulfovibrio salexigens DSM 2638]
 gi|242122550|gb|ACS80246.1| FolC bifunctional protein [Desulfovibrio salexigens DSM 2638]
          Length = 427

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 113/379 (29%), Gaps = 34/379 (8%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +  F     GK    ++ V GT+GK S +S++  I    GL          ++   +   
Sbjct: 46  MEEFVRNWGGKSSFPVIHVVGTNGKGSTSSYITSIGCEHGLKVGTFTSPHFVTPRERITI 105

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN-----LGRDH 216
             +         L+    +        A   GL    L     +     N     +    
Sbjct: 106 NGSMLSEEEWCELANQVME-------IAPDAGLTYFELLTCMALVAFKNNEIDLAVMEAG 158

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +          +  + +F  +       +    D  + +        G  + +V      
Sbjct: 159 LGGRYDATNTVDPDLTVFTPIGLDHEKVLGSTIDLIAADKADAMRENGTAITAVQVPEAK 218

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID-----SAL 331
             L+            I+ +    D    L GE Q  NA +AA               A 
Sbjct: 219 TVLETRAKELGCDLHHINDQEIVADLNPSLAGEHQKENAGLAACAWRLFCGKSGIDFDAD 278

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
            +    +   + GR + + +        +D AH +++   +   +         ++F C 
Sbjct: 279 KVRSGVEKAFIAGRLQIIKSART---YILDGAHNTHAFAALEAELERSGVKLDAIIFSCM 335

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTD---DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D++ G    + +    L D  I+      N R+   + + A +           +    
Sbjct: 336 KDKNLG---PVKETLFRLTDGPILASGIEGNERAYPYKDLAAVLGERAKAAKTIDD---- 388

Query: 449 IRTAIEMLNKQD-VLVVAG 466
              A+ MLN  +  +++ G
Sbjct: 389 ---ALSMLNSGEKTVLICG 404


>gi|47094075|ref|ZP_00231802.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|47017551|gb|EAL08357.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|328464970|gb|EGF36249.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           1816]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 134/429 (31%), Gaps = 60/429 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +   +   +        +   +   +  +   T+  + 
Sbjct: 115 TTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEY-----FALEACEYQRHFLAYKPTYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 169 ---------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K   +        G + +F     +      +            F  P  G
Sbjct: 204 GDDAE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPTYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V + L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVKRRFSIT--EKANQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD--DNPRSEDP 425
           +   +   R     + +V         + +  + G   +L+LAD   + D   + R +  
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTG 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETVHIVTNGEKKMS 483
               A++ H   G               E+L   + V++  G G  +             
Sbjct: 380 NLTIADLAHKTKGNHIIKE-----EHTEELLKYPEAVILFMGAGDVQKFQAAYEKVL--- 431

Query: 484 VDCDIIREI 492
            D +++ E 
Sbjct: 432 -DHEVLTEA 439


>gi|326568323|gb|EGE18403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC7]
          Length = 469

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 122/387 (31%), Gaps = 32/387 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSV 129
           I++S     +  S        I VV + + F+    A  L       ++A+TG++ KS+V
Sbjct: 65  IIISPGIDPRTPSIAAAKAQGIPVVSDVQLFIDTLKARDLAQATNTPVIAITGSNAKSTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ +R+G+     G   T               + L    +         V +E 
Sbjct: 125 TTLVGEMAKRAGMIVGVGGNIGTP-------------ALELLTIQNMDL------VVLEL 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE              
Sbjct: 166 SSFQLE--HISNLAAQGATILNLSADHLDRHDGMADYLAQKLRIFEHCQTAIICQDDAGL 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  ++R       + +            +    +   +    +         + G+
Sbjct: 224 AKQCLTTLQRIAPNHTIITTDSSLTHQTADFYLFDDGDGMALYHQKDKLLPIHQLKIKGK 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL A  L  A  +    +L+ L+    +P R E++                  S 
Sbjct: 284 HNLLNALSALALGTAANLPMDAMLDTLKTFKGLPHRCEYIDDIDGKAYFNDSKGTNIGST 343

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +  + T+     + +   G  + Q     +    +   D   +       +D   I 
Sbjct: 344 MAAIDGLGTVYGTSSLALILGGLGKGQDF-SELSAYVMQWVDSVYLI-----GQDAPMIE 397

Query: 430 AEIIHG----IPGFIEKGNRIEAIRTA 452
            +++ G         + G    A+  A
Sbjct: 398 QDLLKGDAHLASKIYQVGTLDRAVLAA 424


>gi|206575746|ref|YP_002240440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
 gi|206564804|gb|ACI06580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
          Length = 438

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 139/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIE--------LFCREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDTDREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG          +     +  + +  E        PL 
Sbjct: 213 ADDALTMPVRGADDRCISFGVDVGDYH-------LNRQQGETWLRVKGEKVLNVKEMPLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVLDHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  ++    G + ++ G  G   D    KR + G       D   +        +
Sbjct: 326 STEAALNGLQL--DGTLYLLLGGDGKSADFTPLKRYLGG-------DRIRLYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R ++       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPDV------AVQTETMEQAMRQIASLVKAGDMVLL 410


>gi|323486714|ref|ZP_08092035.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323692147|ref|ZP_08106390.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
 gi|323400095|gb|EGA92472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323503721|gb|EGB19540.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 85/278 (30%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N+  DH+D H+T + Y   K  + +     ++  + Y
Sbjct: 161 EVSSFQLET--IMDFRPNVSAILNITPDHLDRHKTMECYTQVKESITKNQKDGDTCVLNY 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                   + +        V+    + K      +            V          L 
Sbjct: 219 ----DDTVLREFGETLKINVVYFSSREKLKKGYYLEDGKIVYNDGSKVTEIVDISELKLL 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  + + + +    + E + K   V  R EFV                 +
Sbjct: 275 GRHNHENVMAAVAISMNMDVPLEKIQEVIRKFEAVEHRIEFVTERFGVKYYNDSKGTNPD 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +K +         ++   G D+       +      +  + ++       +  +K
Sbjct: 335 AAMQAIKAMPG-----PTILIAGGYDKHSEFDEWIESFDGKVRYLVLI------GQTRDK 383

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    +   + +EA++      N  D +++
Sbjct: 384 IAECAKRHGFTDIMYAEDLLEAVQVCASYANPGDNVLL 421


>gi|296332043|ref|ZP_06874507.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675562|ref|YP_003867234.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150814|gb|EFG91699.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413806|gb|ADM38925.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 432

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 120/402 (29%), Gaps = 56/402 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+     +    +    P++      KFL  +  +         +AVTG  GK+S
Sbjct: 64  VIAGNAFPDTHPEIEKAMSDGIPVIR---YHKFLGDYMKKFTS------VAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +SF IG  +   +   +            +   +  S    +  + 
Sbjct: 115 TTGLLAHVIQNAKPTSFLIGDGTGQGNENSEY-----FVFEACEYRRHFLSYQPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY  +    F+A     E  L      I   
Sbjct: 169 ---------------------TNIDFDHPDYFSSIDDVFDAFQ---EMALQVNKGIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD +   + K   N        G +  F     V +                 F  P  G
Sbjct: 205 DDEH---LPKIHANVPVVYYGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V N+L    LC    IDS+++   L+    V  RF           +  DYAH    
Sbjct: 262 HHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRFNEKQLG--DQVLIDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDP 425
           +++ ++  R     R IV         R Q       +     AD   + D      E+ 
Sbjct: 320 IKVTIEAARQKYPDREIVAVFQPHTFTRTQQFLDEFAESLS-GADCVYLCDIFGSARENA 378

Query: 426 EKI-RAEIIHGIPGFIEKGNRIEAIRTAIEML-----NKQDV 461
            K+   ++   I           ++  A E          D+
Sbjct: 379 GKLTIGDLQGKIHNAKLIEEDDTSVLKAHEKAVLIFMGAGDI 420


>gi|94984441|ref|YP_603805.1| FolC bifunctional protein [Deinococcus geothermalis DSM 11300]
 gi|94554722|gb|ABF44636.1| FolC bifunctional protein [Deinococcus geothermalis DSM 11300]
          Length = 414

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 28/162 (17%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              +    +    PGR E +     GGR+ +D AH  +    +++ +R +   ++ ++FG
Sbjct: 263 EQAIREGARKVHWPGRLEVLPWR--GGRVLLDGAHNPDGARALVEALRGLGVEQLPIIFG 320

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              D+D      +      LA   I+T    +PR+ DP    A    G+P         +
Sbjct: 321 AAADKDI---AEVAAALRPLASEVILTRAVLSPRAADPTT-LAPYFAGLP-VQLASTPAD 375

Query: 448 AIR--------------TAIEMLNKQDVLVV--AGKGHETVH 473
           A+                 I  L     L++  AG+G E   
Sbjct: 376 ALERLLPTGLALVCGSLYLIGELRP---LLLGEAGEGRERWQ 414


>gi|71066305|ref|YP_265032.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter arcticus
           273-4]
 gi|109892725|sp|Q4FQW0|MURC_PSYA2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71039290|gb|AAZ19598.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter arcticus
           273-4]
          Length = 479

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 134/430 (31%), Gaps = 54/430 (12%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + IA  A+ IVVSSA    +          + VV   R+   L       +G  
Sbjct: 72  GHD--SKNIAN-ADVIVVSSAIDRSNPEVKAALEARLPVV---RRADMLGELMRYRHG-- 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ G  GK++  S +  +        ++ IG     S        +        +
Sbjct: 124 ----IAIAGAHGKTTTTSLLTTMMAEGNLDPTYVIGGKLNASGKNAALGSSRFLIAEADE 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + +                          +  +A   TN+ +DH++ +        A   
Sbjct: 180 SDASFL----------------------SLHPMAAIVTNIDQDHMETYGNSFDKLKAAYI 217

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F + +P    A++  DD     ++              +      +  V          
Sbjct: 218 QFLQNMPFYGLAVVCGDDPELYAMIDDIGRPVLTFGLEPFNDVQ-AVDLVTEGTKTHFTV 276

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  + +       +PG   VYNAL A  +    G+D A +   L+K   V  RFE   + 
Sbjct: 277 LRRDHEPLRLTLNIPGVHNVYNALAAITMATDEGVDDAAITRALQKFEGVGRRFEQHASV 336

Query: 353 SRGGRI---YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIAL 407
           +          DY H    ++  +K  R     R +V+        + +       ++  
Sbjct: 337 TIDDGDVLLIDDYGHHPKEVDATIKAARQSFPERRLVMLFQPHRYSRTRDCFDDFVEVLS 396

Query: 408 DLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRI--EAIRTAIEMLNKQ 459
              D  ++ D     E P      + +   I           ++    A+     +L   
Sbjct: 397 S-VDELLLLDVYSAGESPIAGADTKALARSIRLRGAVEPTIVDKKNIAAVMQ--RLLKAN 453

Query: 460 DVLVVAGKGH 469
           D+L+  G G+
Sbjct: 454 DMLITQGAGN 463


>gi|24113687|ref|NP_708197.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella flexneri 2a str. 301]
 gi|30063741|ref|NP_837912.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella flexneri 2a str. 2457T]
 gi|24052755|gb|AAN43904.1| dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Shigella flexneri 2a str. 301]
 gi|30041996|gb|AAP17722.1| dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Shigella flexneri 2a str. 2457T]
 gi|281601756|gb|ADA74740.1| Dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Shigella flexneri 2002017]
 gi|313651139|gb|EFS15538.1| bifunctional protein folC [Shigella flexneri 2a str. 2457T]
 gi|332755365|gb|EGJ85729.1| bifunctional protein folC [Shigella flexneri K-671]
 gi|332756315|gb|EGJ86666.1| bifunctional protein folC [Shigella flexneri 2747-71]
 gi|332766135|gb|EGJ96345.1| folC bifunctional protein [Shigella flexneri 2930-71]
 gi|333016277|gb|EGK35608.1| bifunctional protein folC [Shigella flexneri K-304]
          Length = 422

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 113/386 (29%), Gaps = 42/386 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            + A     K    +  V GT+GK +    ++ I   +G           +    +    
Sbjct: 37  QVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQ 96

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
               P     A           +S+       +   L  + L   +  ++    +     
Sbjct: 97  GQELPESAHTASFAEIESARGDISLTY----FEYGTLSALWLFKQAQLDVVILEVGLGGR 152

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       +                D  S  + K       +   VG       +  V
Sbjct: 153 LDATNIVDADVAVVTSIALDHTDWLGPDRESIGLEKAGIFRSEKPAIVGEPEMPSTIADV 212

Query: 283 --------CAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGID 328
                        +   +++     F          PLP   Q   A   A L  +    
Sbjct: 213 AQEKGALLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEV 272

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
           S   +       ++PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V
Sbjct: 273 SENAIRDGIASAILPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAV 329

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFI 440
            G   D+D         IA  LA +  V DD        PR         +++  +    
Sbjct: 330 IGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGK 376

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +  +A   A+     +D ++V G
Sbjct: 377 SFDSVAQAWDAAMADAKAEDTVLVCG 402


>gi|281491653|ref|YP_003353633.1| folylpolyglutamate synthase/dihydrofolate synthase [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375371|gb|ADA64884.1| Folylpolyglutamate synthase / Dihydrofolate synthase [Lactococcus
           lactis subsp. lactis KF147]
          Length = 427

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 69/212 (32%), Gaps = 8/212 (3%)

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           V+          +          +++    +        ++ +             +   
Sbjct: 207 VIWEVARKNTARVYQFPYDYRTEVEEHEHFNFFSGQEAILDIEKSLVGLHQIENAGMAIE 266

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L            +  V+    +    P R E +G       I +D AH ++++  +L+N
Sbjct: 267 LSLVYASKVGIELTEDVIRSGIREAFWPARMEKLGEKPL---ILLDGAHNAHAMNRLLEN 323

Query: 376 IR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
           +       +I ++F     +D  +   M +     + + + T D P++ +    +     
Sbjct: 324 LSSEFPDKKITIIFSAIITKDISQMIKMLQTV-KNSHLILTTFDYPKALNLGDFQRLEEE 382

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           G        +   A+  A + L + D+L+V G
Sbjct: 383 G---VELAPSWELALVRAQKNLAEDDLLLVTG 411


>gi|295677465|ref|YP_003605989.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
 gi|295437308|gb|ADG16478.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
          Length = 1046

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 98/353 (27%), Gaps = 27/353 (7%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++ S              + P+L V +T K +    S    +    +LAVTG++GK++
Sbjct: 634 VGVITSDPDVQAQL-----KDLPVLHVADTGKAILAMGSYARKQMSGAVLAVTGSAGKTT 688

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           + + +       G ++      +     + +                   +    HV +E
Sbjct: 689 LVAMLADALNAYGQTAASAFNANLPHGLSWNL---------------ASINWDTPHVVLE 733

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +   + +  L   +     FTN+   H+    T       K  +F  +       +   
Sbjct: 734 VAVGNMGKSALIA-RPNISIFTNIQPAHLGKSSTITDIARTKSMIFRGMSAGSIVILNRD 792

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
              +              V           L    A+     V I      +        
Sbjct: 793 MLEWETVYQAAMEQDLNIVTYGTTAQSDFQLVDHDALRQSATVRIRGRDITYPIGAAGLH 852

Query: 309 EFQVYNALVAAGLCIAIGIDSA-LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 A++AA L +   ++ A   +     L       E          I   Y     
Sbjct: 853 MALNSVAVLAAVLALNYPLEPALERIARFTALSGRGQELELTLDGRHMTIIDHAYNANPG 912

Query: 368 SLEMILKNIRTITS-GRIIVVFGCG---GDRDQGKRPIMGKIALDLA-DIAIV 415
           S++  L+++R +    R + V G     G         +  +      D   V
Sbjct: 913 SMQAALEHLRDMKHARRRVAVLGEMAELGPEAPMLHADLAAVVERCGIDRVYV 965


>gi|218548230|ref|YP_002382021.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia fergusonii ATCC 35469]
 gi|218355771|emb|CAQ88384.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia fergusonii ATCC 35469]
          Length = 422

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 113/386 (29%), Gaps = 42/386 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            + A     K    +  V GT+GK +    ++ I   +G           +    +    
Sbjct: 37  QVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQ 96

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
               P     A           +S+       +   L  + L   +  ++    +     
Sbjct: 97  GQELPESAHTASFAEIESARGDISLTY----FEYGTLSALWLFKQAQLDVVILEVGLGGR 152

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A       +                D  S    K       +   VG       +  V
Sbjct: 153 LDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRNEKPAIVGEPEMPSTIADV 212

Query: 283 --------CAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCIAIGID 328
                        +   ++S     F   +      PLP   Q   A   A L  +    
Sbjct: 213 AQEKGALLQRRGIEWNYSVSDNDWTFSDAYGTLENLPLPLVPQPNAATALAALRASGLEV 272

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
           S   +       ++PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V
Sbjct: 273 SENAIRDGIASAILPGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAV 329

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFI 440
            G   D+D         IA  LA +  V DD        PR         +++  +    
Sbjct: 330 IGMLHDKD---------IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGK 376

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +  +A   A+     +D ++V G
Sbjct: 377 SFDSVAQAWDAAMADAKAEDTVLVCG 402


>gi|15604275|ref|NP_220791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           prowazekii str. Madrid E]
 gi|6225735|sp|Q9ZDC2|MURD_RICPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3860967|emb|CAA14867.1| UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (murD) [Rickettsia
           prowazekii]
 gi|292572022|gb|ADE29937.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Rickettsia
           prowazekii Rp22]
          Length = 445

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 96/311 (30%), Gaps = 34/311 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I ++ +   F                +A+TGT+GKS+  
Sbjct: 67  IVLSPGVPLTHEVVRIAHHFNIPIISDIDLF-------FEKSKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                          +  +        +E S
Sbjct: 120 ALISHILNSNGLDYPVAGNIGVP---------------------ALQAKASNEGYVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +    +      N+  DH+D +Q    Y  AK ++F+ +       I   +D
Sbjct: 159 SFQLDL--VKSFTVKVAVLLNITPDHLDRYQDMNDYIAAKAKIFDRMDKDSYAVINIDND 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K  +    +   +++         +   +                       L G  
Sbjct: 217 YCRKIFVLLQKDQSIKLIPFSVTKILKNGISIVDDKIHDNDLTY----KLPLNKNLQGLH 272

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N   +  +   IG++S  +LE +     +  R +++G+ +         A  + S  
Sbjct: 273 NCENIAASYAVAKIIGLESKKILESISSFQSLHHRMQYIGSINNISFYNDSKATNAISAL 332

Query: 371 MILKNIRTITS 381
             +K +  I  
Sbjct: 333 QSIKALDNIYW 343


>gi|224498514|ref|ZP_03666863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes Finland 1988]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 93/282 (32%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|254831722|ref|ZP_05236377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 10403S]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 93/282 (32%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|313114911|ref|ZP_07800409.1| protein FolC [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622788|gb|EFQ06245.1| protein FolC [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 424

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 12/163 (7%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             PL G +Q  NA +A      +           +    +    PGRFE +         
Sbjct: 244 HLPLIGSYQPRNAALAITALRVMRTHGWNIPENAIRTGLETVSWPGRFELLRHAPA---F 300

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-DIAIVT 416
            +D +H ++ +   ++++R      + + +     D+D      M  +   LA     V 
Sbjct: 301 LLDGSHNAHGMRATVQSLRDRFPGQKFVFLVSIMADKDVD---QMLSLLAPLAVRFVTVA 357

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
              PR+   E +   I           +    +  A+E+  + 
Sbjct: 358 AHTPRAMTAETLAEHIRAYGCRAEAAASIEAGVARAVELGGEG 400


>gi|298346709|ref|YP_003719396.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
 gi|298236770|gb|ADI67902.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii ATCC
           43063]
          Length = 499

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 48/164 (29%), Gaps = 6/164 (3%)

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NA  A G    +G+D    +  L        R + VG    G RIY DY H    
Sbjct: 309 QHMLLNAGGALGAAYVLGVDLPQFIAALRTFSGADRRMQPVG-ERDGVRIYDDYGHHPTE 367

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDPE 426
           +   L+  R +     ++V        +         ++     D   V       E P 
Sbjct: 368 IAATLQAARDLAGKGRLLVCFQPHLYSRTYHNVDAFARVFAT-VDDLTVCSVYAAREAPI 426

Query: 427 KIRAE--IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                  I   +       +   A   A       D L+  G G
Sbjct: 427 PGVNGNIITEHLGKGTYVADMYAAGLHAFRAARPGDFLLFLGAG 470


>gi|302528468|ref|ZP_07280810.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302437363|gb|EFL09179.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 472

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 135/367 (36%), Gaps = 46/367 (12%)

Query: 69  EAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            A+VVS+A      + +A      P+L      + L+   +         +  + GT GK
Sbjct: 76  SAVVVSTAIKETNPELAAARERGIPVLHRA---QALAGLMAGH------RVACIAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI--YLAKALSYLSSQGVTH 184
           +S  S +                        Q+ R+     I   L ++ +         
Sbjct: 127 TSTTSMLTVA--------------------LQNCRMDPSFAIGGDLNESGANAHHGEGGV 166

Query: 185 VSVEAS-SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              EA  S G        +       TN+  DH+D+H T +AY       F   +     
Sbjct: 167 FVAEADESDGSFLTYTPSV----AVVTNVEPDHLDHHGTAEAYVKV-FSDFVGQIEPGGL 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK---FIHLKKVCAIHNKQQVTISVEGKDF 300
            I+ ADD  +  + + A  AG RV   G        + +       +   V I+++G++ 
Sbjct: 222 LIVCADDEGAARLGEEAAAAGVRVRRYGRAASGEGDVRVLDYTPAPDGGVVRIALDGEEH 281

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           D    +PGE    NA+ A    + +G     +   L     V  RFEF G      R+Y 
Sbjct: 282 DLRVAVPGEHMALNAVAALLAGLELGAPLDGMAAGLAAFGGVRRRFEFKGRAG-DVRVYD 340

Query: 361 DYAHTSNSLEMILKNIR-TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD 418
           DYAH    +   L+ +R    +GR++VVF      R Q       + AL LAD  +V D 
Sbjct: 341 DYAHHPTEVAAQLRAVRTAAGNGRVVVVFQPHLYSRTQTFAAEFAE-ALSLADEVVVLDV 399

Query: 419 NPRSEDP 425
               E+P
Sbjct: 400 FGAREEP 406


>gi|255975546|ref|ZP_05426132.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2]
 gi|256619390|ref|ZP_05476236.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC
           4200]
 gi|256762846|ref|ZP_05503426.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3]
 gi|256853430|ref|ZP_05558800.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8]
 gi|257079296|ref|ZP_05573657.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1]
 gi|257087121|ref|ZP_05581482.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6]
 gi|294779802|ref|ZP_06745189.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           PC1.1]
 gi|255968418|gb|EET99040.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T2]
 gi|256598917|gb|EEU18093.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis ATCC
           4200]
 gi|256684097|gb|EEU23792.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T3]
 gi|256711889|gb|EEU26927.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis T8]
 gi|256987326|gb|EEU74628.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis JH1]
 gi|256995151|gb|EEU82453.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis D6]
 gi|294453176|gb|EFG21591.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           PC1.1]
 gi|295113194|emb|CBL31831.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus sp. 7L76]
 gi|323481052|gb|ADX80491.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis 62]
          Length = 445

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 87/306 (28%), Gaps = 38/306 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG                P   + A  
Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFE 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   + +                         TN+  DH DY+++ +  F+A  + 
Sbjct: 156 ACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQT 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K   A         K + +           V  +                    
Sbjct: 197 MAHQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVY 251

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F+ P  G   + NAL    +     +D   V E +     V  RF     + 
Sbjct: 252 HKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS- 310

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
               I  DYAH    ++  +   R       II VF      R         + ALDLAD
Sbjct: 311 -DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLAD 368

Query: 412 IAIVTD 417
              + +
Sbjct: 369 EVFLCN 374


>gi|229118178|ref|ZP_04247537.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3]
 gi|228665401|gb|EEL20884.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-3]
          Length = 436

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 98/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFADINDVFGAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R +  +
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSAREKKGD 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|119775284|ref|YP_928024.1| FolC bifunctional protein [Shewanella amazonensis SB2B]
 gi|119767784|gb|ABM00355.1| FolC bifunctional protein [Shewanella amazonensis SB2B]
          Length = 421

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/364 (16%), Positives = 119/364 (32%), Gaps = 24/364 (6%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT+GK S  + ++ I +R+G           I  + +  R+     +      ++ 
Sbjct: 55  VTVGGTNGKGSTCAMLENILRRAGYRVGVYSSP-HILHYNERIRIDGVDALDADIINAFE 113

Query: 178 SSQGVTHVS-------------VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
             +                   +     GLD   L+         TNL    I    +  
Sbjct: 114 RIEEARGDISLTFFEFATLTGLLLFKQAGLDVAILEVGLGGRLDATNLVDADIAVVTSVD 173

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
               A +    E + +E   I  A       ++              + G  ++      
Sbjct: 174 LDHQAYLGNTRESVGREKAGIFRAGRPA---IVGEPDMPSTVAEVANHCGALLYRVGQDF 230

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            + ++Q + S +GK          +  + NA      C AIG    L    + +  V   
Sbjct: 231 RYQREQSSWSYQGKLRSLTNMPLPQLPLPNAATVIATCEAIGERLNLSDTVVIEGIVTAR 290

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
               +   S+   +  D AH  ++   +   +      R++ + G   D+D  +   +  
Sbjct: 291 LAGRLEELSQSPLVIADVAHNPHAARFLKSELVRWPGKRVLALCGMLKDKDYREVLNIMH 350

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVL 462
            A+  AD  +VT +  R     ++ A +  G     F       EAI   ++   + DV+
Sbjct: 351 PAV--ADWYLVTLEGERGTRASELAAALPAGAKAHTFDTIEQAREAI---LKDAGEGDVV 405

Query: 463 VVAG 466
           +V G
Sbjct: 406 IVFG 409


>gi|313123440|ref|YP_004033699.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280003|gb|ADQ60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 460

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 117/398 (29%), Gaps = 62/398 (15%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---- 131
            Y     +       PI+         S              + VTG++GK++       
Sbjct: 84  PYENPMVAKASEKGVPIITEPEVALSASE----------SPYVCVTGSNGKTTTVMLTQQ 133

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +    Q+ G  ++ +G          +  L    P  L              + VE SS
Sbjct: 134 IMDHYLQKQGHHAYAVGNIG---WPISEVVLNQAGPDDL--------------LVVEMSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T   Y +AK+ +       +     +    
Sbjct: 177 FQL-MGVTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVCRFQKASDYFLANFDQKD 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 K                 F   +       ++ + I+           LPG   
Sbjct: 236 ILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEKMMKIAD--------IKLPGIHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA G+   +G     +   L        R ++V T           +    +  +
Sbjct: 288 LQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVTTLDGVKVYNDSKSTNIEAATV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD------IAIVTDDNPRSEDP 425
            +++ +        V+   G DR        G +   L D       AIVT    R    
Sbjct: 348 AIQSFKQPE-----VLLAGGLDR--------GFVFDSLVDLFKKHVKAIVTYGETRYLLA 394

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 395 DAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|257898999|ref|ZP_05678652.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257836911|gb|EEV61985.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 496

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/410 (14%), Positives = 135/410 (32%), Gaps = 55/410 (13%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAG-----WIFVAIVGNKE-----------DGHL 58
           ++   +      +R I +V   S H++        +FV +   +            DG+ 
Sbjct: 11  MDGHYLKKYGDLDRNIQDVEYFSGHLKRNMDYSDTMFVCVSPERRSYVNRKVVRWRDGN- 69

Query: 59  FIPQAIAQ----GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
              Q I +    G   IV          +       P  +V+++ KFL   +++L     
Sbjct: 70  --EQIIGKENWFG--VIVTEKPIMDPSVTT------PQFIVEDSWKFLLELSAKLRSCFV 119

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             ++A+TG++GK+S    +  + Q   +  +                 L+ P  + L   
Sbjct: 120 NPVVAITGSAGKTSTRMMITHLLQEEKVLENRGNHNVRFAVPLYMSKLLSNPDVLNLEV- 178

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                +   ++ +   S+          I+      T++G  H+   +  +     K ++
Sbjct: 179 ---SVNALNSYDTGSMSNL---------IQPDIAIVTSIGEAHLSSLKNTKGVAVHKAKI 226

Query: 234 FEELLPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           FE L       I          ++        +   V S+    + + +K++       +
Sbjct: 227 FEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHDASRAVFVKQISQKREYCE 286

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V +S  G+D      +  E  + N+L A  +   +  + +  ++  E    +P   E   
Sbjct: 287 VLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTI 346

Query: 351 T--NSRGGRIYVDYAHT-----SNSLEMILKNIRTITSGRIIVVFGCGGD 393
               +     ++D  H        +       I+    G  +++ G   D
Sbjct: 347 YTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIAD 396


>gi|156933091|ref|YP_001437007.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156531345|gb|ABU76171.1| hypothetical protein ESA_00901 [Cronobacter sakazakii ATCC BAA-894]
          Length = 431

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 108/373 (28%), Gaps = 34/373 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  V GT+GK +    ++ +   +G           +    +           LA
Sbjct: 55  KPAPFVFTVAGTNGKGTTCRTLEAVLMAAGYRVGVYSSPHLVRYTERVRVQGE----ELA 110

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           ++    +   +  V  E S    +   L  + L   +  ++    +       A      
Sbjct: 111 ESQHTAAFAEIEAVRGETSLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNLVDC 170

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +                D  S    K       +   VG       + +V      + +
Sbjct: 171 DVAVITSIALDHTDWLGPDRESIGREKAGIFRAGKPAVVGETDMPHTIAQVAQEKGARLL 230

Query: 292 TISVEGKDFD--------------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
            ++   +                    PLP   Q   A   A L  +    S        
Sbjct: 231 RVNDAWRYEAERDGWRFSDGDGELTHLPLPQVPQPNAATALAALRASGLAISEQAYRDGI 290

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRDQ 396
               +PGRF+ V    R   I +D AH  ++      +  ++ ++GR++ V G   D+D 
Sbjct: 291 ARAALPGRFQIVSEAPR---IILDVAHNPHAAGYLAQRLAQSPSAGRVLAVIGMLHDKDI 347

Query: 397 GKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 G +A    + D       D PR         E+   +       +  +A   A+
Sbjct: 348 A-----GTLACLERVVDSWYCAPLDGPRG----ARAEELAEHLQASAVFDSVAQAWHAAL 398

Query: 454 EMLNKQDVLVVAG 466
                 D ++V G
Sbjct: 399 ADAQPADTVLVCG 411


>gi|197116887|ref|YP_002137314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
 gi|226711912|sp|B5EBP9|MURD_GEOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197086247|gb|ACH37518.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
          Length = 452

 Score = 48.4 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 133/396 (33%), Gaps = 45/396 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS    +      +  +    VV          AS         ++A+TGT+GK+
Sbjct: 69  ADLIVVSPGVPMDIKPLEMARSQKRRVVSEV-----ELASWFIKAP---MVAITGTNGKT 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  +   +I +  G  +F  G                   I LA++   +S      V V
Sbjct: 121 TTTTLTGEIFKACGFETFVGGNIGNPL-------------IELAESGQEVSR-----VVV 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   ++  +       N+  DH+D + + Q Y +AK+R+FE     +  A++ 
Sbjct: 163 ELSSFQLE--GVESFRPDVAVLLNITEDHLDRYHSFQEYIDAKLRIFENQTADD-FAVLN 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD        +       +  +    + I  +      + +   +    + F       
Sbjct: 220 IDDPLVAACASKLKAQLFPMSRLHELEEGISYRDGFITFSHKGKVLRFGTEGFKLK---- 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + N + +    + +  D     E ++    +P R E V                  
Sbjct: 276 GVHNLDNIMASLASTLLMRCDGDCAYEAVKNFKGLPHRMELVEEIDGVAYYEDSKGTNVG 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S+   L++  +      I +   G D+     P+   +   ++ + ++ +   R      
Sbjct: 336 SVVKSLESFDS-----GITLIAGGKDKGGSYEPLAPLVESRVSHLVLIGEAKAR------ 384

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              E +  +          EA+  +  +     V++
Sbjct: 385 -MNEALGSLTDTHLAETLEEAVEISRRLTKPGGVVL 419


>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]
          Length = 479

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 142/372 (38%), Gaps = 26/372 (6%)

Query: 99  RKFLSLF--ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           ++ LS    A+ +  +    ILAVTGT+GKS+VA+F  Q+    G+  F  G      S 
Sbjct: 100 KRVLSELDFAAEILPR-SIKILAVTGTNGKSTVATFSGQMLSHLGIEVFVGGNLGIPLSE 158

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
           A    LT PSP                   VE SS+ L+               NL  DH
Sbjct: 159 AAIQCLTCPSP-----------KPVFQVAVVEVSSYQLEVPN-KHFCPSVAVVLNLTSDH 206

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           ++ H+T + Y   K RL   +   +   + + +   ++ + +  +      +      K 
Sbjct: 207 LERHKTMKNYAITKCRLLSHMTNSKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKV 266

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA--IGIDSALVLE 334
              +KV ++       +S   +       + G    YNA VAA   +   +GID+  +  
Sbjct: 267 DKEEKVASLRVPAIGVVS---ELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISS 323

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            +EKL V P R + V  +S G     D   T  ++E     +  +   + +++ G     
Sbjct: 324 TIEKLRVPPHRMQIVHKDSYGVTWIDDSKAT--NVEATYTGLLGLKEQKSVILLGGLAKV 381

Query: 395 DQGKRP-IMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
              +      ++   L     ++T         + +  + +  IP F E  N  +A+  A
Sbjct: 382 SNSQESNGFEQLVEPLKYHRCVITFGFSGPLIQKTLSDDGLS-IPCF-EAANLEDAVNCA 439

Query: 453 IEMLNKQDVLVV 464
             +    D +V+
Sbjct: 440 RSVARYGDAVVL 451


>gi|260550189|ref|ZP_05824402.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
 gi|260406717|gb|EEX00197.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. RUH2624]
          Length = 482

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 9/230 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRVG 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAG 320
                               V     +   T+  +G++        PG   V NAL A G
Sbjct: 248 RPVITYGFNEDNDI--RAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAIG 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIR 377
           +    G+    +   L+    V  RF+  G    G        DY H    +E  +K  R
Sbjct: 306 VATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAAR 365

Query: 378 TITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP 425
                R +V+        + +       ++     D  ++ +  P  E P
Sbjct: 366 QSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ-VDQLLLLEVYPAGEKP 414


>gi|166154100|ref|YP_001654218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 434/Bu]
 gi|301335338|ref|ZP_07223582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis L2tet1]
 gi|226711895|sp|B0B8Y4|MURD_CHLT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|165930088|emb|CAP03571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis 434/Bu]
          Length = 416

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 68/239 (28%), Gaps = 16/239 (6%)

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A       +L       I  +             A   +         + +       + 
Sbjct: 160 ADQEKSYPVLSGGMILNISDNHLDYHGNFSEYFQAKQNLALCMRNPDDLWVGDERFYGHL 219

Query: 289 QQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGR 345
               +    +  D             YN   A  L  I   I     +E +   +  P R
Sbjct: 220 YLEEVQKYMRLLDKESALKPLYLHDKYNYCCAYLLAKIEFPISETSFIEAVATFNKPPHR 279

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E++G       I    A T ++ E  L     +  G   +V   G ++      ++   
Sbjct: 280 MEYLGQKQGIHYINDSKATTVSATETAL-----LGVGNQAIVILGGRNKGCTFSSLLP-- 332

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AL  A  ++V       E  ++I  ++           N  EA+  A E     DV+V+
Sbjct: 333 ALRKAAKSVVAM----GECAQEIARDLEEF--PVTVVKNLSEALLCAEEQAVPGDVIVL 385


>gi|83764807|dbj|BAE54951.1| unnamed protein product [Aspergillus oryzae]
          Length = 497

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 134/420 (31%), Gaps = 55/420 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRS----NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           A+ +V S+A +    +  + +      P++     R  +   AS +        +A++G+
Sbjct: 85  AKLVVASTAATKNKTNVEVDAARDRRIPVIH----RSEM--LASLMRHH---KSIAISGS 135

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GKS+  S V  + +  GL                    TT S   + +  S        
Sbjct: 136 HGKSTTTSMVAGMLEAGGL------------------SPTTISGAVVTQYGSNAHMGSGH 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA        RL  +       TN+  DHI ++ TQ+    A    F   +P    
Sbjct: 178 WMVVEADESDGTMVRLPALI---SVVTNIDSDHITFYGTQEKTR-ATFAQFVRNVPFYGL 233

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   ++++    +       V         + V          +SV  +     
Sbjct: 234 AVLCIDDPGVRKILPEVQDRNIVTYGVSEDADV-RAENVEYNPQDSTFVLSVRDRRDGTR 292

Query: 304 F-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    + G   V NAL    + + + I+   +   L        R+      + G 
Sbjct: 293 RVVGSIVLNVLGLHNVQNALATTAIALELSIELESIRYALGSFQGTNRRY-IHVGEANGI 351

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIV 415
           +I  D+      ++      +   + R+I V+      R+          A + +   I+
Sbjct: 352 QIIDDFGTHPAEIKATQTMAKQAGARRVIAVYQPTVVVRNVEAWLEEYPAAFEESAHIII 411

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
              +    DP     E    +  ++    R +AI              +  + D +V  G
Sbjct: 412 GQADGVEVDPVP-TGEARETLVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMG 470


>gi|229105316|ref|ZP_04235965.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28]
 gi|228678242|gb|EEL32470.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-28]
          Length = 436

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 97/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFADINDVFGAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    +C    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIAICHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    +
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGD 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|227893335|ref|ZP_04011140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           ultunensis DSM 16047]
 gi|227864750|gb|EEJ72171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           ultunensis DSM 16047]
          Length = 459

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 111/393 (28%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y           N PI+         S              + VTG++GK++     Q+
Sbjct: 84  PYENPMVKKAEELNIPIITEPEIALSCSE----------APYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKSGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +      A+  
Sbjct: 176 FQL-LGVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQTSDDYFI---ANYD 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K    +  ++ +                   Q   I            LPG   
Sbjct: 232 QKDILAKEKKVSPAKIQTFSETDHNADYFIGDEYLESQNEKIMK-----IADIKLPGIHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N++VA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 287 LQNSMVAIAISKIMGADNDDIAAVLSTFAGAKHRLQYVTTLDGRKVYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +   +        V+   G DR      ++  +        ++       E    +   
Sbjct: 347 AIPAFKEPE-----VLIAGGLDRGFTFDDLVP-LFKKHVKAIVL-----YGETKYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E+    DVL+
Sbjct: 396 ARKAGIKEIVIVNTLQEAVPRAYELTQPGDVLL 428


>gi|313637023|gb|EFS02594.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria seeligeri
           FSL S4-171]
          Length = 455

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 90/282 (31%), Gaps = 22/282 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    +   K      TN+   H+DYH  +  Y  AK  + +     + 
Sbjct: 163 QYISMELSSFQL--MGVKTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTEDDF 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +          E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FYDEVIGARD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L    +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 SILLPGEHNLENVLAXXAVAKTLGVANEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++       A I          
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFFKNVKALIVF-------G 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           E  +KI               N   A+  A       D++++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|291536441|emb|CBL09553.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis M50/1]
          Length = 454

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 99/302 (32%), Gaps = 25/302 (8%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +        +   T    E SS  L+            +  N+  DH+D H T +AY 
Sbjct: 144 IGIPYTSIVEKTTEQTVTVTEISSFQLETMETF--HPSVSAILNITPDHLDRHHTMEAYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  + +    +++  + Y +D   ++  +          S     + I+L++      
Sbjct: 202 RAKESITKCQTKEDTCVLNY-EDEILRKFAETLKVNVLFFSSKRPLEEGIYLQENTIWIA 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            ++     +         L G     N + A+G  + +G    +V   L++   V  R E
Sbjct: 261 GKETE--RQRLIDVGELKLLGIHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVKHRIE 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM----G 403
           FV             A   ++    + +       R  ++ G G D++      +    G
Sbjct: 319 FVRDLQGVLYYNDSKATNPDAAIRGIGS-----MNRKTLLIGGGYDKNLEFDAWIESFDG 373

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           K+   L  +   T D        KI      HG    +      EA+     +    + +
Sbjct: 374 KVKCLL--LIGQTKD--------KIAVCARKHGFENIVCCDTLNEAVNICYRLAKPGEAV 423

Query: 463 VV 464
           ++
Sbjct: 424 LL 425


>gi|226360453|ref|YP_002778231.1| folylpolyglutamate synthase [Rhodococcus opacus B4]
 gi|226238938|dbj|BAH49286.1| folylpolyglutamate synthase [Rhodococcus opacus B4]
          Length = 475

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V        +++D AH  +    +   +       +++ V    GD+D     
Sbjct: 327 NPGRLERVRNAPT---VFLDAAHNPDGARALAAALTAEFDFRKLVGVVSVMGDKDVDG-- 381

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAI---- 453
            +      + D  +VT + + R+ D E +    +   G    +      +A+ TAI    
Sbjct: 382 -ILSALEPVFDELVVTHNGSARAMDVEDLANLAVAKFGDERVVVAPTLADALETAIGLAE 440

Query: 454 EMLNKQDVL 462
           E+    + +
Sbjct: 441 EVAEPGEAV 449


>gi|115358103|ref|YP_775241.1| FolC bifunctional protein [Burkholderia ambifaria AMMD]
 gi|172062889|ref|YP_001810540.1| FolC bifunctional protein [Burkholderia ambifaria MC40-6]
 gi|115283391|gb|ABI88907.1| FolC bifunctional protein [Burkholderia ambifaria AMMD]
 gi|171995406|gb|ACB66324.1| FolC bifunctional protein [Burkholderia ambifaria MC40-6]
          Length = 436

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     R
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHAAAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLR 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIPG-----FIEKGNRIEAIRTA 452
            + G++     D   VTD   PR+   E++ A +   G+            +  EA R A
Sbjct: 351 HLAGEV-----DHWCVTDLPLPRAASAEQLEAALRKAGVEDGPDSSVTRFASPAEAFRDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|325570066|ref|ZP_08145991.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156894|gb|EGC69065.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 444

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 84/307 (27%), Gaps = 38/307 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   +AVTG+ GK+S    +  +      +SF IG                P   + + 
Sbjct: 103 QPYTSIAVTGSHGKTSTTGLLSHVLSGIRPTSFLIG---------DGTGHGEPDAEFFSF 153

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                    + +                         TN+  DH DY  +    F+A   
Sbjct: 154 EACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYFHSIDDVFSAFQS 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           +  ++                + + K   +       V                  +   
Sbjct: 196 MASQVKKGIFAFG------DDEYLRKLEADVPIYYYGVNDNDDVQAKNIERTTQGSEFDV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                    F+ P  G+  + NAL    +    G+D   V   +     V  RF      
Sbjct: 250 FIHGENIGHFVLPAFGQHNINNALSVIAVAYKEGLDMKEVAAEMLSFPGVKRRF--SEKI 307

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                I  DYAH    ++  +   R       II VF      R         + ALDLA
Sbjct: 308 VADMTIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 366

Query: 411 DIAIVTD 417
           D   + D
Sbjct: 367 DHVYLCD 373


>gi|323491028|ref|ZP_08096220.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
 gi|323314692|gb|EGA67764.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
          Length = 486

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 124/406 (30%), Gaps = 50/406 (12%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +AV GT GK++  + V Q
Sbjct: 94  ENPEIIAARAARIPVV-----RRAEMLAELMRFRHG------IAVAGTHGKTTTTALVTQ 142

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   +GL    +     + S   + RL +   +      S  S                 
Sbjct: 143 IYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH-------------- 187

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++ +    TN+  DH+D +             F   LP    AI+  DD   +E
Sbjct: 188 ------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCVDDPVVRE 241

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++    +                          +   I     D D    +PG     NA
Sbjct: 242 LIP-GISRQVITYGFSEDADVRIANYRQEGQQGKFTVIRQGKADLDITLNIPGRHNALNA 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMI 372
             A  +     I    +L  +        RF+ +G    G     +  DY H    +++ 
Sbjct: 301 SAAIAVATEDDISDEAILNAMAGTQGTGRRFDHLGEFDTGNGHAMLVDDYGHHPTEVDVT 360

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP----- 425
           ++  R     + +V+        + +        +     D+ I+ D     E P     
Sbjct: 361 IQAARNGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYSAGEKPIAGAD 419

Query: 426 -EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              +   I   G    I   +  +A+ + +   L   D+++  G G
Sbjct: 420 GRALCRTIRSRGKLDPIFVPD-SKALPSVLANVLQDGDLVLTQGAG 464


>gi|296437236|gb|ADH19406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis G/11222]
          Length = 416

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 67/239 (28%), Gaps = 16/239 (6%)

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A       +L       I  +             A   +         + +       + 
Sbjct: 160 ADQEKSYPVLSGGMILNISDNHLDYHGNFSEYFQAKQNLALCMRNPDDLWVGDERFYGHL 219

Query: 289 QQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVVPGR 345
               +    +  D             YN   A  L      I     +E +   +  P R
Sbjct: 220 YLEEVQKYMRLLDKESALKPLYLHDKYNYCCAYLLAKTEFPISETSFIEAVATFNKPPHR 279

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E++G       I    A T ++ E  L     +  G   +V   G ++      ++   
Sbjct: 280 MEYLGQKQGIHYINDSKATTVSATETAL-----LGVGNQAIVILGGRNKGCTFSSLLP-- 332

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AL  A  ++V       E  ++I  ++           N  EA+  A E     DV+V+
Sbjct: 333 ALRKAAKSVVAM----GECAQEIARDLEEF--PVTVVKNLSEALLCAEEQAVPGDVIVL 385


>gi|15605491|ref|NP_220277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76789500|ref|YP_328586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis A/HAR-13]
 gi|237803188|ref|YP_002888382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805109|ref|YP_002889263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255311592|ref|ZP_05354162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 6276]
 gi|255317893|ref|ZP_05359139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 6276s]
 gi|30315980|sp|O84763|MURD_CHLTR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063242|sp|Q3KKT4|MURD_CHLTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3329220|gb|AAC68353.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76168030|gb|AAX51038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis A/HAR-13]
 gi|231273409|emb|CAX10324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274422|emb|CAX11217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|296436307|gb|ADH18481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis G/9768]
 gi|296438166|gb|ADH20327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis G/11074]
 gi|297140667|gb|ADH97425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis G/9301]
 gi|297748888|gb|ADI51434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis D-EC]
 gi|297749768|gb|ADI52446.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis D-LC]
          Length = 416

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 67/239 (28%), Gaps = 16/239 (6%)

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A       +L       I  +             A   +         + +       + 
Sbjct: 160 ADQEKSYPVLSGGMILNISDNHLDYHGNFSEYFQAKQNLALCMRNPDDLWVGDERFYGHL 219

Query: 289 QQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLCI-AIGIDSALVLEHLEKLHVVPGR 345
               +    +  D             YN   A  L      I     +E +   +  P R
Sbjct: 220 YLEEVQKYMRLLDKESALKPLYLHDKYNYCCAYLLAKTEFPISETSFIEAVATFNKPPHR 279

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E++G       I    A T ++ E  L     +  G   +V   G ++      ++   
Sbjct: 280 MEYLGQKQGIHYINDSKATTVSATETAL-----LGVGNQAIVILGGRNKGCTFSSLLP-- 332

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AL  A  ++V       E  ++I  ++           N  EA+  A E     DV+V+
Sbjct: 333 ALRKAAKSVVAM----GECAQEIARDLEEF--PVTVVKNLSEALLCAEEQAVPGDVIVL 385


>gi|309388991|gb|ADO76871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium
           praevalens DSM 2228]
          Length = 449

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 92/278 (33%), Gaps = 20/278 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+   +   K     + N   DH+D HQT +  + A      +       AII
Sbjct: 163 LELSSFQLEA--VKDFKAKIALYLNYSPDHLDRHQT-EKNYQAAKANIFKNQQPSDFAII 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD Y  E+  +       + +   +   I    +     ++   + +          L
Sbjct: 220 DLDDPYLSELKNKLEAKVLTISAKNEKADLIIQDNIAYYQKEKLKLLDLS------KINL 273

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G+    NA  AA      G     +    +   +   R E +   +    I    A   
Sbjct: 274 LGKHNQKNAAFAALAAYLAGQKPEKIQLAAQNYKLKAHRMEVIANKNNKLIINDSKATNP 333

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +S    + ++      + I++   G DR      +  +I        I+       E+ +
Sbjct: 334 DSTLKAINSLE-----KDIILIAGGQDRKADFSVLKSEI-EKKVKTLIL-----LGENKK 382

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++    +      IE      A+  A++ L+   VL++
Sbjct: 383 QLANIFLDSKLKIIEVETMKTAVTEALKHLDSNSVLLL 420


>gi|256964811|ref|ZP_05568982.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis
           HIP11704]
 gi|256955307|gb|EEU71939.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecalis
           HIP11704]
          Length = 445

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 87/306 (28%), Gaps = 38/306 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG                P   + A  
Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFE 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   + +                         TN+  DH DY+++ +  F+A  + 
Sbjct: 156 ACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQT 196

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K   A         K + +           V  +                    
Sbjct: 197 MAHQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVY 251

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F+ P  G   + NAL    +     +D   V E +     V  RF     + 
Sbjct: 252 HKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS- 310

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
               I  DYAH    ++  +   R       II VF      R         + ALDLAD
Sbjct: 311 -DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLAD 368

Query: 412 IAIVTD 417
              + +
Sbjct: 369 EVFLCN 374


>gi|332872846|ref|ZP_08440811.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
 gi|332739007|gb|EGJ69869.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter baumannii
           6014059]
          Length = 482

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 9/230 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 188 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFVQFLHNLPFYGLAVVCGDDANIREILPRVG 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAG 320
                               V     +   T+  +G++        PG   V NAL A G
Sbjct: 248 RPVITYGFNEDNDI--RAIDVEQDGMRSHFTVLRKGREPLRLTINQPGLHNVLNALAAIG 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY---VDYAHTSNSLEMILKNIR 377
           +    G+    +   L+    V  RF+  G    G        DY H    +E  +K  R
Sbjct: 306 VATDEGVSDEAISRALKGFSGVGRRFQVQGEFELGEGNVKLVDDYGHHPKEVEATIKAAR 365

Query: 378 TITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP 425
                R +V+        + +       ++     D  ++ +  P  E P
Sbjct: 366 QSHPDRRLVMLFQPHRYSRTRDCFDDFIEVLSQ-VDQLLLLEVYPAGEKP 414


>gi|291518134|emb|CBK73355.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Butyrivibrio
           fibrisolvens 16/4]
          Length = 429

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 95/359 (26%), Gaps = 51/359 (14%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A      +    + +TGT GKS+ +S +  I +  G      G          D      
Sbjct: 96  ADLFLQVYGAQTIGITGTKGKSTTSSLLYHILKTCGKDVLFGGNIGLPIFDITDQ----- 150

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
                            T +  E S H L+               NL  DH+D++ T + 
Sbjct: 151 -------------IHPRTIIVFELSCHQLEY---AHYSPSKAILLNLYEDHLDHYGTVEK 194

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
           Y+ AK  L+      +             E                       + KV   
Sbjct: 195 YWYAKQNLYRNQGYCDFLFCNPDFLPKQGECKAA-------------------IIKVKTG 235

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                    + G        L     VY+       C    I     ++ L     +  R
Sbjct: 236 DLPFSSFEEIPGVTLRGTHNLFNTAFVYDV------CRRYDISDKEFMDALATFKTLAHR 289

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            EF+GT           + T  S    +K I          +   G DR     P++  +
Sbjct: 290 LEFIGTKDGVDYYDDSISTTVESCISAIKAIP-----NAGTILLGGMDRGIDYDPLVEFL 344

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  I+  D+ +    +         +       +   A     E  +K   +++
Sbjct: 345 QTRTLEHIILMYDSGKVLLEKLQAVATPEFMEHVHYIEDLASACAFVKENASKGTAVIL 403


>gi|148269829|ref|YP_001244289.1| UDP-N-acetylmuramate--alanine ligase [Thermotoga petrophila RKU-1]
 gi|166224745|sp|A5IKJ0|MURC_THEP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147735373|gb|ABQ46713.1| UDP-N-acetylmuramate--L-alanine ligase [Thermotoga petrophila
           RKU-1]
          Length = 457

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF-VGTNSRGGRIYVD 361
              +PG   V NAL    L  ++G D A VLE LE+   V  RF            +  D
Sbjct: 258 KLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD 317

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI--MGKIALDLADIAIVTDDN 419
           YAHT + +  +L+  + +     IVV        + +R      K AL LAD  +VT+  
Sbjct: 318 YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYTRLEREDGNFAK-ALQLADEVVVTEVY 376

Query: 420 PRSED 424
              E+
Sbjct: 377 DAFEE 381


>gi|114320395|ref|YP_742078.1| FolC bifunctional protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226789|gb|ABI56588.1| FolC bifunctional protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 437

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 19/133 (14%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD-QGKRP 400
           PG  E V     G     D AH  +S+ ++ + +R     GR+I +F     +   G   
Sbjct: 299 PGHMERVRRR--GVEWLFDVAHNEDSVRVLAETVRDEAGKGRVIGLFAAMHRKALSGVLA 356

Query: 401 IMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIH-GIPGFIEKGNRIEAIRTAIE 454
            MG +  +      +    PR EDP     E + A +   G+   +     + A+  A+ 
Sbjct: 357 TMGAVVDEW----YL----PRLEDPQAHPPEAVAAGLRETGVDASVIHTGGLSALLAAVA 408

Query: 455 -MLNKQDVLVVAG 466
                 D +VV G
Sbjct: 409 DRARPGDRVVVFG 421


>gi|229076197|ref|ZP_04209165.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18]
 gi|229099168|ref|ZP_04230102.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29]
 gi|228684396|gb|EEL38340.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock3-29]
 gi|228707060|gb|EEL59265.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-18]
          Length = 436

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 97/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       F A     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFADINDVFGAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    +
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGD 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I G     +
Sbjct: 381 LTIEDLQKRIDGAELITD 398


>gi|298372915|ref|ZP_06982905.1| tetrahydrofolate synthase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275819|gb|EFI17370.1| tetrahydrofolate synthase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 407

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 3/121 (2%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                   +   I  D  H    +  + + +R     R+ ++FG   D+   KR  +  +
Sbjct: 281 MGRWQQIGQNPVIVCDTGHNEGGIRYVAEQLRNERYSRLHIIFGMVADK---KRDCIYPL 337

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               A         PR+ D   +  E            +  +AI  A     K+D + + 
Sbjct: 338 LPKDAIYYFTKPSIPRALDEHILAEEASAYGLMGRTYPSVRKAIAAARRNAQKKDFIYIG 397

Query: 466 G 466
           G
Sbjct: 398 G 398


>gi|291458940|ref|ZP_06598330.1| tetrahydrofolate synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418194|gb|EFE91913.1| tetrahydrofolate synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 450

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VV 387
               +         PGRFE +  +     I +D AH  +    + +++R++  GR I  +
Sbjct: 278 PEDAVRSGLSKVRWPGRFELLSRSPL---ILLDGAHNPDGAAAMTESLRSLLPGRKIDFL 334

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRI 446
            G   D+D  +  ++           I   +  R+   E++ AEI     G +E G +  
Sbjct: 335 MGVMRDKDYREMLLLTAPIARRYTAVIPEGEYERALPAERLAAEIRKYFDGPVEIGKDIR 394

Query: 447 EAIRTAIEML 456
             +  A+  L
Sbjct: 395 SGLSLALSHL 404


>gi|284991684|ref|YP_003410238.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
 gi|284064929|gb|ADB75867.1| UDP-N-acetylmuramate/alanine ligase [Geodermatophilus obscurus DSM
           43160]
          Length = 489

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 128/412 (31%), Gaps = 43/412 (10%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVS+A      + +A       +L     R      A+ + GK     +AV GT G
Sbjct: 79  ADTVVVSTAIREDNPELAAARERGLRVL----PRAV--ALAAVMAGK---RSVAVAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K+S  S +    Q  G+          ++    +                          
Sbjct: 130 KTSTTSMLTVAVQACGVD-PSFAIGGDLNESGSNAHAGGGDVFV---------------- 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                +   +  R   +    G+           +    A   A    F + L      +
Sbjct: 173 -----AEADESDRSFLLLAPHGAIVTNVEADHLDNYGDLAAVEAAFDRFLQTLDPAGFVV 227

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           + ADD  S  +      A  R            +             +            
Sbjct: 228 LCADDPGSARLRTVPTPARVRTYGTAEDSDLRLVDVEVGPETTAWTAVLDGDVLGRVPIR 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PGE    N+  A    + +G+ +  ++  L +   V  RFE  G    G R+Y DYAH 
Sbjct: 288 VPGEHMARNSAAALLAGLELGLPAEGLISGLGRFGGVHRRFELKG-TVGGVRVYDDYAHH 346

Query: 366 SNSLEMILKNIRTI-TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +E  L+  R +  +GR++V F      R +      G  AL LAD  +V D     E
Sbjct: 347 PTEVEAQLRAARAVAGTGRVVVAFQPHLYSRTREFAAAFG-TALGLADEVVVMDVYGARE 405

Query: 424 DP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           DP        +   +         + +   A     +     D+++  G G+
Sbjct: 406 DPVPGVTGAMVADAVALPAERVHFEPSWSAAAPALADRAGPGDLVITMGAGN 457


>gi|229032342|ref|ZP_04188315.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271]
 gi|228729122|gb|EEL80125.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH1271]
          Length = 436

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 97/378 (25%), Gaps = 46/378 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           ++++           + +    + V     FL    ++         +AVTG  GK+S  
Sbjct: 63  VIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTS------VAVTGAHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + Q +  +S+ IG         ++++          +                  
Sbjct: 117 GLLAHVMQGAHPTSYLIG--DGTGHGVENSKYFVFEACEYRRHF---------------- 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY       FNA     E  L  +   I   DD
Sbjct: 159 ---------LSYNPDYAIMTNIDFDHPDYFSDINDVFNAFQ---EMALQVKKGIIACGDD 206

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                + K            G    F                         F     G  
Sbjct: 207 EE---LQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL    LC    +D   V   L     V  RF       +   I  DYAH    + 
Sbjct: 264 SVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQ--VIIDDYAHHPTEIN 321

Query: 371 MILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +       +     AD   + D   + R    E
Sbjct: 322 ATIEAARQKHPEREVVAVFQPHTFSRTEKFLDEFAESLSK-ADQVYLCDIFGSARENKGE 380

Query: 427 KIRAEIIHGIPGFIEKGN 444
               ++   I       +
Sbjct: 381 LTIEDLQKRIDVAELITD 398


>gi|189464540|ref|ZP_03013325.1| hypothetical protein BACINT_00882 [Bacteroides intestinalis DSM
           17393]
 gi|189438330|gb|EDV07315.1| hypothetical protein BACINT_00882 [Bacteroides intestinalis DSM
           17393]
          Length = 459

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 114/353 (32%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HNSKGLCVAGTHGKTTTSTMTAHLLYQSHVGCTAF-LGGISKNYDTNLLLSQSSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T    DH+D + T++AY  +   
Sbjct: 169 ADEFDRSFHWLSPYMSV-------------------ITATDPDHLDIYGTEEAYLESFRH 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
               +          A   +    +K    AG +V S        H + +          
Sbjct: 210 YTTLIQ------SGGALIIHKDIALKPDVQAGVKVYSYARTEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I+ + +  D    +P    + N + A  L    G+    + + +     V  RF+F   
Sbjct: 264 FIAPDTRINDIQLGVPVSINIENGVAAMALAHLNGVTDEEIKQGMASFRGVDRRFDF-KV 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
            +       DYAH    +   +K+IR +   + I          +  R    + A  L+ 
Sbjct: 323 KNDKVVFLSDYAHHPAEIAQSVKSIRDLYQDKKITAIFQPHLYTRT-RDFYKEFANSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+D+L
Sbjct: 382 LDEVILVDIYPAREQP-------IPGVTSQLIYDNLRPGIEKC--MCKKEDIL 425


>gi|313608536|gb|EFR84427.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes FSL
           F2-208]
          Length = 380

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 67/418 (16%), Positives = 130/418 (31%), Gaps = 58/418 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
           ++    +    P++      KFL               +A+TG+ GK+S    +  +   
Sbjct: 8   EEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTSTTGLLSHVVGA 58

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              +S+ IG  +   +   +        +   +   +  +   T+  +            
Sbjct: 59  IRPTSYLIGDGTGSGTKGAEY-----FALEACEYQRHFLAYKPTYAIM------------ 101

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN+  DH DY ++    FNA   L ++       A+    D     + K 
Sbjct: 102 ----------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFALGDDAE--LRKL 145

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           + +        G + +F     +      +            F  P  G+  V NAL   
Sbjct: 146 SLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVI 205

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
            LC   G+    V + L+    V  RF           +  DYAH  + +   +   R  
Sbjct: 206 ALCDYEGLPVEDVKKELKTFEGVKRRFSIT--EKANQVLVDDYAHHPSEIRATVNAARQK 263

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGI 436
              + +V         + +  + G   +L+LAD   + D   + R +      A++ H  
Sbjct: 264 YPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHKT 323

Query: 437 PGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETVHIVTNGEKKMSVDCDIIREI 492
            G               E+L   + V++  G G  +              D +++ E 
Sbjct: 324 KGNHIIKE-----EHTEELLKYPEAVILFMGAGDVQKFQAAYEKVL----DHEVLTEA 372


>gi|163816707|ref|ZP_02208070.1| hypothetical protein COPEUT_02897 [Coprococcus eutactus ATCC 27759]
 gi|158447964|gb|EDP24959.1| hypothetical protein COPEUT_02897 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 87/278 (31%), Gaps = 16/278 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  NL  DH++ H T + Y N K  + +     +   +  
Sbjct: 166 EISSFQLET--VIDFHPNVSAILNLTPDHLNRHYTFENYGNVKFSITKNQTMDDVTVL-- 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D      M     +  RV+      K      V   +   +               L 
Sbjct: 222 NYDDEHTRAMGEKAKSHVRVVYFSRLEKPAGGVYVEDGNIVLEDGDKKINVLALSDLKLL 281

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A G+   +G+   ++         V  R E+V T +             +
Sbjct: 282 GAHNVENVLAAVGISYYMGVPVDVIRNVATSFKAVEHRIEYVDTINGVAYYNDSKGTNPD 341

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++ + + T      + G G D+       +      +  + ++       +  +K
Sbjct: 342 AAIKGIQAMVSPTY-----LIGGGYDKGSEYDEWIEAFGGKVKCLVLI------GQTAQK 390

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    + + N  EA+    E     D +++
Sbjct: 391 IADCAKRHGFNSIVFEENLQEAVAYCHENAVDGDAVLL 428


>gi|317138866|ref|XP_001816953.2| UDP-N-acetylmuramate--L-alanine ligase [Aspergillus oryzae RIB40]
          Length = 641

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 134/420 (31%), Gaps = 55/420 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRS----NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           A+ +V S+A +    +  + +      P++     R  +   AS +        +A++G+
Sbjct: 229 AKLVVASTAATKNKTNVEVDAARDRRIPVIH----RSEM--LASLMRHH---KSIAISGS 279

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GKS+  S V  + +  GL                    TT S   + +  S        
Sbjct: 280 HGKSTTTSMVAGMLEAGGL------------------SPTTISGAVVTQYGSNAHMGSGH 321

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA        RL  +       TN+  DHI ++ TQ+    A    F   +P    
Sbjct: 322 WMVVEADESDGTMVRLPALI---SVVTNIDSDHITFYGTQEKTR-ATFAQFVRNVPFYGL 377

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   ++++    +       V         + V          +SV  +     
Sbjct: 378 AVLCIDDPGVRKILPEVQDRNIVTYGVSEDADV-RAENVEYNPQDSTFVLSVRDRRDGTR 436

Query: 304 F-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    + G   V NAL    + + + I+   +   L        R+      + G 
Sbjct: 437 RVVGSIVLNVLGLHNVQNALATTAIALELSIELESIRYALGSFQGTNRRY-IHVGEANGI 495

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIV 415
           +I  D+      ++      +   + R+I V+      R+          A + +   I+
Sbjct: 496 QIIDDFGTHPAEIKATQTMAKQAGARRVIAVYQPTVVVRNVEAWLEEYPAAFEESAHIII 555

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
              +    DP     E    +  ++    R +AI              +  + D +V  G
Sbjct: 556 GQADGVEVDPVP-TGEARETLVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMG 614


>gi|145628987|ref|ZP_01784786.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 22.1-21]
 gi|148827263|ref|YP_001292016.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittGG]
 gi|144978490|gb|EDJ88213.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 22.1-21]
 gi|148718505|gb|ABQ99632.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittGG]
          Length = 453

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 76/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G    G  +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNGITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDDIAPALGRADEVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|52425724|ref|YP_088861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mannheimia
           succiniciproducens MBEL55E]
 gi|62900506|sp|Q65RY4|MURD_MANSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52307776|gb|AAU38276.1| MurD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 439

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 130/407 (31%), Gaps = 79/407 (19%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   S++        +  + VV +   F    A          ++A+TG++GKS+V 
Sbjct: 69  IVISPGLSVKTAEIQTALSAGVEVVGDIELFCREAAK--------PVIAITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +GLS    G                   + L      L         +E S
Sbjct: 121 ALVTEMGKAAGLSVGMGGNIGIP-------------ALSLLNENHDL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH++ +   + Y  AK+ ++         A+I  +D
Sbjct: 161 SFQLET--TYSLKATAATVLNVTEDHMNRYADLEEYRQAKLNIY----HHCQTAVINGED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +KE  K++                        +  K ++ ++ +              
Sbjct: 215 PLTKEDDKQSAQQQVSFAENNADYWLKTENGKKYLMAKDKLILACDEIKLTGRHNH---- 270

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL A  L  A GI ++ +L  L     +  RF+     +    +    A    S  
Sbjct: 271 --MNALAAIALAQAAGIKNSGILTALRTFPGLAHRFQLAHMANGVRWVNDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G                 AD          SE  + I  
Sbjct: 329 AALTGL--HIEGKLHLLLGGDG---------------KGADF---------SELEKLINK 362

Query: 431 -EIIHGI------------PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            EI                          +AI T    L   D++++
Sbjct: 363 PEIFCYCFGQDGAHLAKLSSQSQLFNTMEQAIETLRPTLKPGDMVLL 409


>gi|194335053|ref|YP_002016913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312871|gb|ACF47266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
          Length = 469

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 118/373 (31%), Gaps = 48/373 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTISSFAQD 159
             AS      P  I+AVTGT GK++ A+ +  IC       G   F +G           
Sbjct: 102 EAASWFC---PARIIAVTGTDGKTTTATLIAAICADHALAAGYRVFSVGNIG-------- 150

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                     +  +    S        VE SS+ L+       +      TN+  DH+D 
Sbjct: 151 ----------VPFSSMVGSMASGDIAVVEVSSYQLE--GCTWFRPDIALMTNITPDHLDR 198

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           +      +            ++   I+ ADD   ++  +       ++ + G        
Sbjct: 199 YDGSMRLYAEAKYRIFSRQRQDDTLIVNADDPILRQRFEERLGVVPQLAAFGLDAGRTRA 258

Query: 280 KKVCAIHNKQQVTISVEGKDFDF---------LFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   +       +    D               G   + NAL AA    A G+  +
Sbjct: 259 FAASGAVTEGGWITLFKSGSLDERVIAHEDLLKRGFMGRHNLSNALAAALAADAAGVPLS 318

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L+    V  R E+V        I    A   N++   L+ +        +V+   
Sbjct: 319 SIKRALKAFGGVEHRQEYVCEIDGVICINDSKATNLNAMRQALEAVSG-----PVVLIAG 373

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
           G D+D   R +   +A  +  +  +       E  ++        +P  +  G+  EA+R
Sbjct: 374 GRDKDGDYRELRDLVASKVEMLVAL------GEAADRFTGAYGESVP-AVTAGSLREAVR 426

Query: 451 TAIEMLNKQDVLV 463
             ++   +   L+
Sbjct: 427 LGLQHARRGSTLL 439


>gi|172057971|ref|YP_001814431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sibiricum 255-15]
 gi|226711910|sp|B1YIT8|MURD_EXIS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171990492|gb|ACB61414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Exiguobacterium
           sibiricum 255-15]
          Length = 449

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 115/352 (32%), Gaps = 44/352 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             + +A+TG++GK++  + V ++ +R        G                   + +A+ 
Sbjct: 109 KADWVAITGSNGKTTTTTLVHELLKRGSKRVHLAGNIGFP-------------AVEVAQQ 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                 +    + +E SS  L    ++    ++ +F NL   H+DYH    +Y  AK R+
Sbjct: 156 A-----EAGDVIVIELSSFQL--MGIESFCPVSAAFLNLSPAHLDYHGDVTSYAAAKARI 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F  +       +  ADD     + + A                I    +     +     
Sbjct: 209 FSNMDEAGRLVV-NADDEEVMRLSETAAAERLTFSRRQDAYAHIENDMIFVGQTEILPVR 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
            +       L            L A  L    GI    + + L     V  R E++G  +
Sbjct: 268 ELALGGGHNLEN---------VLAALTLIEPFGISLTAIQDVLRTFGGVAHRTEYIGEFA 318

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
                    A  + + E  L   ++      I+    G +R     P+  K A+      
Sbjct: 319 GRKVYNDSKATNNVATEAALSGFQS-----PIIWICGGLERGADLTPL--KSAMTHVKHV 371

Query: 414 I-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I + +   R  D      +I   +          EA+ TA ++    D++++
Sbjct: 372 IGLGETGQRFADLAT-EQQIASTVTR-----EMEEAVATAFDVSKPGDIILL 417


>gi|333001460|gb|EGK21028.1| bifunctional protein folC [Shigella flexneri VA-6]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|325496645|gb|EGC94504.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia fergusonii ECD227]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|324112852|gb|EGC06828.1| FolC protein [Escherichia fergusonii B253]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|324015396|gb|EGB84615.1| protein FolC [Escherichia coli MS 60-1]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|323977484|gb|EGB72570.1| FolC protein [Escherichia coli TW10509]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|323187960|gb|EFZ73255.1| bifunctional protein folC [Escherichia coli RN587/1]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|320174672|gb|EFW49805.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella dysenteriae CDC 74-1112]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|309702627|emb|CBJ01956.1| bifunctional FolC protein [includes: folylpolyglutamate synthase;
           dihydrofolate synthase] [Escherichia coli ETEC H10407]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|309784975|ref|ZP_07679608.1| bifunctional protein folC [Shigella dysenteriae 1617]
 gi|308927345|gb|EFP72819.1| bifunctional protein folC [Shigella dysenteriae 1617]
          Length = 403

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 268 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 318

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 319 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 371

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 372 DAKAEDTVLVCG 383


>gi|331653759|ref|ZP_08354760.1| bifunctional protein FolC [Escherichia coli M718]
 gi|331048608|gb|EGI20684.1| bifunctional protein FolC [Escherichia coli M718]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|300928486|ref|ZP_07144012.1| protein FolC [Escherichia coli MS 187-1]
 gi|300463481|gb|EFK26974.1| protein FolC [Escherichia coli MS 187-1]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|301024147|ref|ZP_07187857.1| protein FolC [Escherichia coli MS 69-1]
 gi|331673817|ref|ZP_08374580.1| bifunctional protein FolC [Escherichia coli TA280]
 gi|331683987|ref|ZP_08384583.1| bifunctional protein FolC [Escherichia coli H299]
 gi|300396691|gb|EFJ80229.1| protein FolC [Escherichia coli MS 69-1]
 gi|331069090|gb|EGI40482.1| bifunctional protein FolC [Escherichia coli TA280]
 gi|331078939|gb|EGI50141.1| bifunctional protein FolC [Escherichia coli H299]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|294491600|gb|ADE90356.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           IHE3034]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|293370473|ref|ZP_06617026.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CMC
           3f]
 gi|292634465|gb|EFF53001.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides ovatus SD CMC
           3f]
          Length = 458

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 109/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQSHVECTAF-LGGISKNYGTNLLLSQTSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T+   DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMTV-------------------ITSTDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           N R      DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+++L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEEIL 425


>gi|293410672|ref|ZP_06654248.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli B354]
 gi|331663832|ref|ZP_08364742.1| bifunctional protein FolC [Escherichia coli TA143]
 gi|291471140|gb|EFF13624.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli B354]
 gi|331059631|gb|EGI31608.1| bifunctional protein FolC [Escherichia coli TA143]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|284922303|emb|CBG35388.1| bifunctional FolC protein [includes: folylpolyglutamate synthase;
           dihydrofolate synthase] [Escherichia coli 042]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|331647971|ref|ZP_08349063.1| bifunctional protein FolC [Escherichia coli M605]
 gi|281179402|dbj|BAI55732.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli SE15]
 gi|330912138|gb|EGH40648.1| dihydrofolate synthase / Folylpolyglutamate synthase [Escherichia
           coli AA86]
 gi|331043695|gb|EGI15833.1| bifunctional protein FolC [Escherichia coli M605]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|229817320|ref|ZP_04447602.1| hypothetical protein BIFANG_02581 [Bifidobacterium angulatum DSM
           20098]
 gi|229785109|gb|EEP21223.1| hypothetical protein BIFANG_02581 [Bifidobacterium angulatum DSM
           20098]
          Length = 518

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 61/185 (32%), Gaps = 15/185 (8%)

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           + +D      +PG     NA  A    + +G+D+    + +        RF+  GT  + 
Sbjct: 316 QPRDIPVELSVPGVHNARNAAAALTAAMLLGVDADEAAKSITGFLGAARRFQVRGTVKQ- 374

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIA 413
             +  DYAH    +  +L   R       I V        + K       +     AD  
Sbjct: 375 VTVVDDYAHHPTEIAALLDAARRRYPESTIRVLFQPHLFSRTKFFAHEFAEALAK-ADDV 433

Query: 414 IVTDDNPRSED--------PEKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLV 463
           IVT   P  E         P  I  E   G+ G     + +   A +  +   +  DV+ 
Sbjct: 434 IVTGVFPAREKQEDFPGVGPLSIVRE-AKGMQGVEFSAQEDMRVAAQMMVMRAHHGDVIF 492

Query: 464 VAGKG 468
             G G
Sbjct: 493 TVGAG 497


>gi|218705845|ref|YP_002413364.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli UMN026]
 gi|293405781|ref|ZP_06649773.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli FVEC1412]
 gi|298381464|ref|ZP_06991063.1| folC [Escherichia coli FVEC1302]
 gi|300896997|ref|ZP_07115476.1| protein FolC [Escherichia coli MS 198-1]
 gi|218432942|emb|CAR13836.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli UMN026]
 gi|291427989|gb|EFF01016.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli FVEC1412]
 gi|298278906|gb|EFI20420.1| folC [Escherichia coli FVEC1302]
 gi|300359178|gb|EFJ75048.1| protein FolC [Escherichia coli MS 198-1]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|170682976|ref|YP_001744515.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli SMS-3-5]
 gi|170520694|gb|ACB18872.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           SMS-3-5]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|166154975|ref|YP_001653230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|226711897|sp|B0BAL3|MURD_CHLTB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|165930963|emb|CAP06525.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 416

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 16/239 (6%)

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           A       +L       I  +             A   +         + +       + 
Sbjct: 160 ADQEKSYPVLSGGMILNISDNHLDYHGNFSEYFQAKQNLALCMRNPDDLWVGDERFYGHL 219

Query: 289 QQVTISVEGKDFDFLF--PLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHVVPGR 345
               +    +  D             +N   A  L  I   I     +E +   +  P R
Sbjct: 220 YLEEVQKYMRLLDKESALKPLYLHDKHNYCCAYLLAKIEFPISETSFIEAVATFNKPPHR 279

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E++G       I    A T ++ E  L     +  G   +V   G ++      ++   
Sbjct: 280 MEYLGQKQGIHYINDSKATTVSATETAL-----LGVGNQAIVILGGRNKGCTFSSLLP-- 332

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AL  A  ++V       E  ++I  ++           N  EA+  A E     DV+V+
Sbjct: 333 ALRKAAKSVVAM----GECAQEIARDLEEF--PVTVVKNLSEALLCAEEQAVPGDVIVL 385


>gi|91211612|ref|YP_541598.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli UTI89]
 gi|117624505|ref|YP_853418.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli APEC O1]
 gi|215487528|ref|YP_002329959.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218559228|ref|YP_002392141.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli S88]
 gi|218690475|ref|YP_002398687.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli ED1a]
 gi|218700791|ref|YP_002408420.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli IAI39]
 gi|237704794|ref|ZP_04535275.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia sp. 3_2_53FAA]
 gi|256017527|ref|ZP_05431392.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella sp. D9]
 gi|300918513|ref|ZP_07135106.1| protein FolC [Escherichia coli MS 115-1]
 gi|300924585|ref|ZP_07140547.1| protein FolC [Escherichia coli MS 182-1]
 gi|300936894|ref|ZP_07151781.1| protein FolC [Escherichia coli MS 21-1]
 gi|312967615|ref|ZP_07781830.1| bifunctional protein folC [Escherichia coli 2362-75]
 gi|331658398|ref|ZP_08359360.1| bifunctional protein FolC [Escherichia coli TA206]
 gi|332278534|ref|ZP_08390947.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Shigella sp. D9]
 gi|91073186|gb|ABE08067.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli UTI89]
 gi|115513629|gb|ABJ01704.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli APEC O1]
 gi|215265600|emb|CAS10003.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218365997|emb|CAR03741.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli S88]
 gi|218370777|emb|CAR18590.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli IAI39]
 gi|218428039|emb|CAR08958.2| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli ED1a]
 gi|226901160|gb|EEH87419.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia sp. 3_2_53FAA]
 gi|300414327|gb|EFJ97637.1| protein FolC [Escherichia coli MS 115-1]
 gi|300419216|gb|EFK02527.1| protein FolC [Escherichia coli MS 182-1]
 gi|300458005|gb|EFK21498.1| protein FolC [Escherichia coli MS 21-1]
 gi|307626148|gb|ADN70452.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli UM146]
 gi|312287812|gb|EFR15717.1| bifunctional protein folC [Escherichia coli 2362-75]
 gi|315288289|gb|EFU47688.1| protein FolC [Escherichia coli MS 110-3]
 gi|315298150|gb|EFU57414.1| protein FolC [Escherichia coli MS 16-3]
 gi|320196183|gb|EFW70807.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli WV_060327]
 gi|320199906|gb|EFW74495.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli EC4100B]
 gi|323952108|gb|EGB47982.1| FolC protein [Escherichia coli H252]
 gi|323955886|gb|EGB51640.1| FolC protein [Escherichia coli H263]
 gi|324009235|gb|EGB78454.1| protein FolC [Escherichia coli MS 57-2]
 gi|331056646|gb|EGI28655.1| bifunctional protein FolC [Escherichia coli TA206]
 gi|332100886|gb|EGJ04232.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Shigella sp. D9]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|82777726|ref|YP_404075.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella dysenteriae Sd197]
 gi|81241874|gb|ABB62584.1| dihydrofolate:folylpolyglutamate synthetase [Shigella dysenteriae
           Sd197]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|26248704|ref|NP_754744.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli CFT073]
 gi|227887375|ref|ZP_04005180.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 83972]
 gi|300983539|ref|ZP_07176633.1| protein FolC [Escherichia coli MS 45-1]
 gi|301049074|ref|ZP_07196058.1| protein FolC [Escherichia coli MS 185-1]
 gi|306814573|ref|ZP_07448735.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli NC101]
 gi|26109109|gb|AAN81312.1|AE016763_271 FolC bifunctional protein [Escherichia coli CFT073]
 gi|222034071|emb|CAP76812.1| FolC bifunctional protein [Escherichia coli LF82]
 gi|227835725|gb|EEJ46191.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 83972]
 gi|300299121|gb|EFJ55506.1| protein FolC [Escherichia coli MS 185-1]
 gi|300408501|gb|EFJ92039.1| protein FolC [Escherichia coli MS 45-1]
 gi|305851967|gb|EFM52419.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli NC101]
 gi|307554377|gb|ADN47152.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli ABU 83972]
 gi|312946934|gb|ADR27761.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|315292278|gb|EFU51630.1| protein FolC [Escherichia coli MS 153-1]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|61680167|pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
 gi|61680173|pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|110642519|ref|YP_670249.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 536]
 gi|191170204|ref|ZP_03031758.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           F11]
 gi|300986855|ref|ZP_07177837.1| protein FolC [Escherichia coli MS 200-1]
 gi|110344111|gb|ABG70348.1| FolC [Escherichia coli 536]
 gi|190909720|gb|EDV69305.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           F11]
 gi|300306344|gb|EFJ60864.1| protein FolC [Escherichia coli MS 200-1]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|110806280|ref|YP_689800.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella flexneri 5 str. 8401]
 gi|193062465|ref|ZP_03043560.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E22]
 gi|194429447|ref|ZP_03061970.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           B171]
 gi|260844902|ref|YP_003222680.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O103:H2 str. 12009]
 gi|260856359|ref|YP_003230250.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O26:H11 str. 11368]
 gi|260869037|ref|YP_003235439.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O111:H- str. 11128]
 gi|293446652|ref|ZP_06663074.1| folC [Escherichia coli B088]
 gi|300818081|ref|ZP_07098293.1| protein FolC [Escherichia coli MS 107-1]
 gi|300822190|ref|ZP_07102332.1| protein FolC [Escherichia coli MS 119-7]
 gi|307311124|ref|ZP_07590768.1| FolC bifunctional protein [Escherichia coli W]
 gi|309793198|ref|ZP_07687626.1| protein FolC [Escherichia coli MS 145-7]
 gi|331678261|ref|ZP_08378936.1| bifunctional protein FolC [Escherichia coli H591]
 gi|110615828|gb|ABF04495.1| dihydrofolate synthetase [Shigella flexneri 5 str. 8401]
 gi|192932131|gb|EDV84730.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E22]
 gi|194412508|gb|EDX28807.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           B171]
 gi|195183054|dbj|BAG66614.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O111:H-]
 gi|257755008|dbj|BAI26510.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O26:H11 str. 11368]
 gi|257760049|dbj|BAI31546.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O103:H2 str. 12009]
 gi|257765393|dbj|BAI36888.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O111:H- str. 11128]
 gi|291323482|gb|EFE62910.1| folC [Escherichia coli B088]
 gi|300525320|gb|EFK46389.1| protein FolC [Escherichia coli MS 119-7]
 gi|300529225|gb|EFK50287.1| protein FolC [Escherichia coli MS 107-1]
 gi|306908630|gb|EFN39127.1| FolC bifunctional protein [Escherichia coli W]
 gi|308123484|gb|EFO60746.1| protein FolC [Escherichia coli MS 145-7]
 gi|315061608|gb|ADT75935.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli W]
 gi|323156466|gb|EFZ42621.1| bifunctional protein folC [Escherichia coli EPECa14]
 gi|323161581|gb|EFZ47467.1| bifunctional protein folC [Escherichia coli E128010]
 gi|323171998|gb|EFZ57642.1| bifunctional protein folC [Escherichia coli LT-68]
 gi|323176759|gb|EFZ62349.1| bifunctional protein folC [Escherichia coli 1180]
 gi|323184365|gb|EFZ69741.1| bifunctional protein folC [Escherichia coli 1357]
 gi|323377811|gb|ADX50079.1| FolC bifunctional protein [Escherichia coli KO11]
 gi|331074721|gb|EGI46041.1| bifunctional protein FolC [Escherichia coli H591]
 gi|332754965|gb|EGJ85330.1| bifunctional protein folC [Shigella flexneri 4343-70]
 gi|333001980|gb|EGK21546.1| bifunctional protein folC [Shigella flexneri K-218]
 gi|333002684|gb|EGK22244.1| bifunctional protein folC [Shigella flexneri K-272]
 gi|333016568|gb|EGK35898.1| bifunctional protein folC [Shigella flexneri K-227]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|74312832|ref|YP_311251.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella sonnei Ss046]
 gi|82544796|ref|YP_408743.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella boydii Sb227]
 gi|170019376|ref|YP_001724330.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli ATCC 8739]
 gi|187730129|ref|YP_001881137.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella boydii CDC 3083-94]
 gi|191169677|ref|ZP_03031370.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           B7A]
 gi|209919815|ref|YP_002293899.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli SE11]
 gi|218554870|ref|YP_002387783.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli IAI1]
 gi|300903706|ref|ZP_07121621.1| protein FolC [Escherichia coli MS 84-1]
 gi|301303223|ref|ZP_07209348.1| protein FolC [Escherichia coli MS 124-1]
 gi|331669014|ref|ZP_08369862.1| bifunctional protein FolC [Escherichia coli TA271]
 gi|73856309|gb|AAZ89016.1| dihydrofolate:folylpolyglutamate synthetase [Shigella sonnei Ss046]
 gi|81246207|gb|ABB66915.1| dihydrofolate:folylpolyglutamate synthetase [Shigella boydii Sb227]
 gi|169754304|gb|ACA77003.1| FolC bifunctional protein [Escherichia coli ATCC 8739]
 gi|187427121|gb|ACD06395.1| tetrahydrofolate synthase/dihydrofolate synthase [Shigella boydii
           CDC 3083-94]
 gi|190900281|gb|EDV60137.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           B7A]
 gi|209913074|dbj|BAG78148.1| dihydrofolate:folylpolyglutamate synthase [Escherichia coli SE11]
 gi|218361638|emb|CAQ99234.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli IAI1]
 gi|300404288|gb|EFJ87826.1| protein FolC [Escherichia coli MS 84-1]
 gi|300841397|gb|EFK69157.1| protein FolC [Escherichia coli MS 124-1]
 gi|315255252|gb|EFU35220.1| protein FolC [Escherichia coli MS 85-1]
 gi|320183771|gb|EFW58605.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella flexneri CDC 796-83]
 gi|323168512|gb|EFZ54192.1| bifunctional protein folC [Shigella sonnei 53G]
 gi|323944828|gb|EGB40894.1| FolC protein [Escherichia coli H120]
 gi|324020837|gb|EGB90056.1| protein FolC [Escherichia coli MS 117-3]
 gi|324117807|gb|EGC11706.1| FolC protein [Escherichia coli E1167]
 gi|331064208|gb|EGI36119.1| bifunctional protein FolC [Escherichia coli TA271]
 gi|332093668|gb|EGI98726.1| bifunctional protein folC [Shigella boydii 3594-74]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|16130250|ref|NP_416818.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89109135|ref|AP_002915.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli str. K-12 substr. W3110]
 gi|157161803|ref|YP_001459121.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli HS]
 gi|170081931|ref|YP_001731251.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188496304|ref|ZP_03003574.1| FolC bifunctional protein [Escherichia coli 53638]
 gi|194436095|ref|ZP_03068197.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           101-1]
 gi|238901490|ref|YP_002927286.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli BW2952]
 gi|253772761|ref|YP_003035592.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162324|ref|YP_003045432.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli B str. REL606]
 gi|256022000|ref|ZP_05435865.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia sp. 4_1_40B]
 gi|300948536|ref|ZP_07162630.1| protein FolC [Escherichia coli MS 116-1]
 gi|300956417|ref|ZP_07168708.1| protein FolC [Escherichia coli MS 175-1]
 gi|301023562|ref|ZP_07187326.1| protein FolC [Escherichia coli MS 196-1]
 gi|301647582|ref|ZP_07247379.1| protein FolC [Escherichia coli MS 146-1]
 gi|307138980|ref|ZP_07498336.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli H736]
 gi|312973425|ref|ZP_07787597.1| bifunctional protein folC [Escherichia coli 1827-70]
 gi|331642955|ref|ZP_08344090.1| bifunctional protein FolC [Escherichia coli H736]
 gi|2506433|sp|P08192|FOLC_ECOLI RecName: Full=Bifunctional protein folC; Includes: RecName:
           Full=Folylpolyglutamate synthase; AltName:
           Full=Folylpoly-gamma-glutamate synthetase; Short=FPGS;
           AltName: Full=Tetrahydrofolylpolyglutamate synthase;
           Short=Tetrahydrofolate synthase; Includes: RecName:
           Full=Dihydrofolate synthase
 gi|1788654|gb|AAC75375.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1799699|dbj|BAA16164.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli str. K12 substr. W3110]
 gi|157067483|gb|ABV06738.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           HS]
 gi|169889766|gb|ACB03473.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188491503|gb|EDU66606.1| FolC bifunctional protein [Escherichia coli 53638]
 gi|194424823|gb|EDX40808.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           101-1]
 gi|238860078|gb|ACR62076.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli BW2952]
 gi|242377948|emb|CAQ32717.1| bifunctional folypolyglutamate synthetase / dihydrofolate
           synthetase [Escherichia coli BL21(DE3)]
 gi|253323805|gb|ACT28407.1| FolC bifunctional protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974225|gb|ACT39896.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli B str. REL606]
 gi|253978392|gb|ACT44062.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli BL21(DE3)]
 gi|260448591|gb|ACX39013.1| FolC bifunctional protein [Escherichia coli DH1]
 gi|299880797|gb|EFI89008.1| protein FolC [Escherichia coli MS 196-1]
 gi|300316766|gb|EFJ66550.1| protein FolC [Escherichia coli MS 175-1]
 gi|300451946|gb|EFK15566.1| protein FolC [Escherichia coli MS 116-1]
 gi|301074272|gb|EFK89078.1| protein FolC [Escherichia coli MS 146-1]
 gi|310332020|gb|EFP99255.1| bifunctional protein folC [Escherichia coli 1827-70]
 gi|315136950|dbj|BAJ44109.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli DH1]
 gi|315615584|gb|EFU96216.1| bifunctional protein folC [Escherichia coli 3431]
 gi|323936605|gb|EGB32892.1| FolC protein [Escherichia coli E1520]
 gi|323940988|gb|EGB37175.1| FolC protein [Escherichia coli E482]
 gi|323961388|gb|EGB56999.1| FolC protein [Escherichia coli H489]
 gi|323973101|gb|EGB68294.1| FolC protein [Escherichia coli TA007]
 gi|331039753|gb|EGI11973.1| bifunctional protein FolC [Escherichia coli H736]
 gi|332344097|gb|AEE57431.1| bifunctional protein FolC [Escherichia coli UMNK88]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|322831954|ref|YP_004211981.1| FolC bifunctional protein [Rahnella sp. Y9602]
 gi|321167155|gb|ADW72854.1| FolC bifunctional protein [Rahnella sp. Y9602]
          Length = 428

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 17/195 (8%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                  A   +          +     PLP       A   A L  +        L   
Sbjct: 226 NWHFSADAGQWRWAAREEGNEVNVLEGLPLPNVPLANAATALAALHYSTLDIPEAALRSG 285

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE--MILKNIRTITSGRIIVVFGCGGDR 394
            +   +PGRF+ V  + R   + +D AH  ++          +    G++  V G   D+
Sbjct: 286 LQRAALPGRFQTVSESPR---LILDVAHNPHAAAYLAGRLAEQPRKGGKVRAVVGMLKDK 342

Query: 395 DQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           D       G +A      D       + PR         E+   +P   +  +   A + 
Sbjct: 343 DIA-----GTLACLSPQVDEWYCAPLEGPRG----ASVEELTVHLPQARQFDDVESAWKQ 393

Query: 452 AIEMLNKQDVLVVAG 466
           A++    QD+++V G
Sbjct: 394 AMQEAAPQDIVIVCG 408


>gi|300788555|ref|YP_003768846.1| dihydrofolate synthase [Amycolatopsis mediterranei U32]
 gi|299798069|gb|ADJ48444.1| dihydrofolate synthase [Amycolatopsis mediterranei U32]
          Length = 551

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V +      + +D AH  +    +   +       R++ V G   ++D     I
Sbjct: 404 PGRLERVRSAPT---VLLDAAHNPHGARALATTVSEEFAFRRLVAVVGVMAEKDA--HGI 458

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +  +   ++DI +  + +PRS   E++    I   G    + + +   AI TAI ++   
Sbjct: 459 LDALEPVVSDIVVTRNSSPRSMPLEELNELAISVFGEDRVVAETDLETAIETAIALVETS 518

Query: 460 D---------VLVVAG 466
           D          ++V G
Sbjct: 519 DDPEEPLAGGGVLVTG 534


>gi|302869351|ref|YP_003837988.1| FolC bifunctional protein [Micromonospora aurantiaca ATCC 27029]
 gi|302572210|gb|ADL48412.1| FolC bifunctional protein [Micromonospora aurantiaca ATCC 27029]
          Length = 444

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 19/136 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V +      + +D AH  + +   +  ++      +++ V    GD+D      
Sbjct: 302 PGRLERVRSAPT---VLLDGAHNPHGMAATVAAVQEEFAFSKLVGVLAVLGDKDA---AS 355

Query: 402 MGKIALDLADIAIVTDDNPRSEDP----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           + ++   + D  +V +++     P      +  EI  G        +  +AI  A+    
Sbjct: 356 LLELLEPVLDSIVVAENSSARALPVDELAALAREIF-GPERVQVARDMPDAIEAAVAETE 414

Query: 458 ---KQDV----LVVAG 466
                ++    +++ G
Sbjct: 415 SDVPGELSGVGVLITG 430


>gi|227833490|ref|YP_002835197.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184478|ref|ZP_06043899.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254765993|sp|C3PHF5|MURC_CORA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227454506|gb|ACP33259.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 496

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 130/426 (30%), Gaps = 59/426 (13%)

Query: 70  AIVVSSAYSLQDFS---ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   QD     A   +  P++   +    L               + + GT GK
Sbjct: 76  VVVTSFAAIPQDNPELTAAREAGIPVIRRSDLLAELME---------GHRQVLLAGTHGK 126

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q++GL          ++    +    T          S  S    +   
Sbjct: 127 TSTTSMAVSALQQAGLD-PSFAIGGQLNRAGTNAHGGTGDAFVAEADESDASLLRYS--- 182

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TN+  DH+DY  T ++Y+      F + + +    ++
Sbjct: 183 -----------------PYVAVITNIEPDHLDYFGTAESYYQV-FDDFADRVVEGGYLVV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS------------ 294
             +DA +    +RA   G +VL  G          V       + T+S            
Sbjct: 225 CLEDAQAATTGERAAQRGIQVLGYGAGSAVDEDSAVPLAAEILEETVSAAGAHIRVRLAL 284

Query: 295 --VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                ++  +   +PG   V N+  A       G D A +   L     V  RFE+ G+ 
Sbjct: 285 PGQAPQELSYDLHVPGHHMVLNSAAALLAGALAGGDPAELAAGLTDFTGVRRRFEYRGSE 344

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-----TITSGRIIVVF-----GCGGDRDQGKRPIM 402
             G R++ DYAH    +  +L   R          R+I  F           D      +
Sbjct: 345 R-GIRVFDDYAHHPTEVSAVLNAARAKADAEGEGARVIACFQPHLYSRTMKFDAEFAQAL 403

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                 +        + P      +I  + +      I + +  EA    I +    D++
Sbjct: 404 ALADAAVVLDIYGAREQPVEGITSRIITDKMPEDMPVIFEPDFSEAAGDVISLAQSGDIV 463

Query: 463 VVAGKG 468
           +  G G
Sbjct: 464 LTIGAG 469


>gi|255692973|ref|ZP_05416648.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides finegoldii DSM
           17565]
 gi|260621286|gb|EEX44157.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides finegoldii DSM
           17565]
          Length = 460

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 107/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHQSHVECTAF-LGGISKNYGTNLLLSQKSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T    DH+D + T          
Sbjct: 169 ADEFDRSFHWLSPFMSV-------------------ITATDPDHLDIYGT------EAAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGVPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDFKIK 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
           N R      DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 324 NDR-IVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+D+L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSRLIYDNLRPGIEK--SMCKKEDIL 425


>gi|239617752|ref|YP_002941074.1| UDP-N-acetylmuramate/alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506583|gb|ACR80070.1| UDP-N-acetylmuramate/alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 445

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 13/243 (5%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  DH++++        A    F + +         ADD        +    G 
Sbjct: 170 HAIVTNVRGDHLEHYNNSLKNLQAHFHYFAKRITGIFI--YNADDE-----ASKRLFGGM 222

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            +      G +   K+ C    +       +     F   LPG   VYNA     +   +
Sbjct: 223 GITFGENDGDYRFTKRTCDRTKQSFEVYHGKHSLGRFTLNLPGIHNVYNATAVIAMAAEL 282

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
           GI   +V   L     V  RF F G    +      DYAHT + +   ++  +     R 
Sbjct: 283 GIPMDIVKNSLATFKSVDRRFTFRGFSEEKNLYFIDDYAHTPDEIRNTIRGAKESYPDRK 342

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFI 440
           I+V        +  R   G+ A  L  AD   V       E      +  E++ G+  + 
Sbjct: 343 IIVVFQPHRYSRLAR-ENGRFAASLKSADAVCVYKLYDAYEKGRYAVSEVEVLEGLKNYG 401

Query: 441 EKG 443
            + 
Sbjct: 402 VES 404


>gi|328468646|gb|EGF39640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           helveticus MTCC 5463]
          Length = 392

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 112/393 (28%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y           N PI+        LS              + VTG++GK++     Q+
Sbjct: 17  PYENPMVKKAEELNIPIITEPEI--ALS--------CSDAPYVCVTGSNGKTTTVMLTQR 66

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 67  ILDHHLQKSGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 108

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +      A+  
Sbjct: 109 FQL-LGVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQNSDDYFI---ANYD 164

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K       ++ +                   Q   I            LPG   
Sbjct: 165 QKDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLESQNEKIMK-----IVDIKLPGIHN 219

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 220 LQNSLVAIAISKVMGADNDDIAAVLSTFTGAKHRLQYVTTLDGRKVYNDSKSTNIEAATV 279

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +        ++       E    +   
Sbjct: 280 AIPSFKEPE-----VLIAGGLDRGFLFDDLVP-LFKKHVKSIVL-----YGETKYLLADA 328

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E+    DV++
Sbjct: 329 ARKAGIKDIVIVNTLQEAVPRAYELSEPGDVIL 361


>gi|294620347|ref|ZP_06699659.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679]
 gi|291593418|gb|EFF24980.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1679]
          Length = 427

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 90/330 (27%), Gaps = 40/330 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AVTG+ GK+S    +  +      +S+ IG           +           +
Sbjct: 86  QNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-----DGTGHGDPQAEFFSFEACE 140

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              +  +    +  +                      TN+  DH DY+ +    F A   
Sbjct: 141 YRRHFLAYSPDYAIM----------------------TNIDFDHPDYYTSIDDVFTAFQT 178

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +  +   AI    D     + K   N       V                      
Sbjct: 179 ----MAGQVKKAIFAYGDDAY--LRKLKANVPIYYYGVTENDDIQARNIERTTSGSAFDV 232

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +     F  P  G+  + NAL    +     +D   V E +     V  RF      
Sbjct: 233 YHGDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVKRRF--SEKI 290

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                +  DYAH    ++  +   R       II VF      R         + ALDLA
Sbjct: 291 VADMTVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 349

Query: 411 DIAIVTD--DNPRSEDPEKIRAEIIHGIPG 438
           D   + D   + R E       ++   I  
Sbjct: 350 DKVYLCDIFGSAREEQGNVKIEDLGAKIKK 379


>gi|226954410|ref|ZP_03824874.1| folylpolyglutamate synthetase/dihydrofolate synthase [Acinetobacter
           sp. ATCC 27244]
 gi|226834858|gb|EEH67241.1| folylpolyglutamate synthetase/dihydrofolate synthase [Acinetobacter
           sp. ATCC 27244]
          Length = 428

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 110/387 (28%), Gaps = 51/387 (13%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-------------- 157
           +    +  V GT+GK S  + +  I    G                              
Sbjct: 45  RPNAKVFTVAGTNGKGSTTTTLAAILNAQGYKVGLYQSPHIYRFNERVKLAGIEVDDQSL 104

Query: 158 -------------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                            L+      LA  +     Q      +E    G     ++ I  
Sbjct: 105 VDAFVAVDQARRDCGLSLSFFEATTLAAFV-IFKHQQCNVWVLEVG-LGGRLDVVNVIDP 162

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G DH D+                 ++  + P +        + +  +     
Sbjct: 163 DIAVITNIGLDHTDWLGDTIEK---IAFEKAGIIRPDIPVVFAGQQQLPQAIQDKVAETQ 219

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
            R+ ++     +       +       T            P+        +   A +  +
Sbjct: 220 ARLYALNRDYFYQLNDDGQSWSFASSGT--------TLKLPVGQLALENISTAVAAVLAS 271

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
               S   +    +   + GRFE      +   +  D  H ++ +E +LK +R       
Sbjct: 272 GLKISQQAIATGIQQARLQGRFEIR--QIQDKTVIFDAGHNAHGVEFLLKQLRNFLKYNK 329

Query: 385 -----IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
                + VF    D+D      + K  +   D  I T D PR+    ++   +       
Sbjct: 330 QYTEVVAVFSMLADKDIASVTNLLKTTVK--DWFIATLDVPRAAPMHQLHDALQE--QQV 385

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +E G+  +A  TA++  N   +++V G
Sbjct: 386 LEFGSIQDAFETALKQCNNNQLILVCG 412


>gi|226357091|ref|YP_002786831.1| tetrahydrofolate synthase (folylpolyglutamate synthase)
           [Deinococcus deserti VCD115]
 gi|226319081|gb|ACO47077.1| putative tetrahydrofolate synthase (folylpolyglutamate synthase)
           [Deinococcus deserti VCD115]
          Length = 435

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 11/128 (8%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR E +       R+ +D AH     E +++ +R +  G++ +VFG   D+D     
Sbjct: 293 QWPGRMEVLTVGEG--RVLLDGAHNPAGAEAVVRALRDLGVGKLPLVFGAAADKDLSG-- 348

Query: 401 IMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            +      +A   ++T    +PRS DP    A +  G        +  +AI     +   
Sbjct: 349 -VAAALEPVASQVVLTRARLSPRSADPAA-LAPLFPGH-QVTLTESPEQAIAALRALGAP 405

Query: 459 QDVLVVAG 466
             + +V G
Sbjct: 406 --LALVCG 411


>gi|260589604|ref|ZP_05855517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
           hansenii DSM 20583]
 gi|260540172|gb|EEX20741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
           hansenii DSM 20583]
          Length = 457

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 96/299 (32%), Gaps = 20/299 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + LS    ++   E SS  L+            +  N+  DH++ H T + Y 
Sbjct: 147 IGNPYTDAALSMTEDSYTVAEISSFQLETIDTFA--PKVSAILNITEDHLNRHHTMEEYI 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K  +      ++   + Y +D   +   +R         S     K   L        
Sbjct: 205 RVKELITANQTKEDYCILNY-EDEVLRAFGERCPAKTVFFSSERKLEKGAFLDGDAICLK 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+ +          + G+    N + A+ +    G+   ++ + + +   V  R E
Sbjct: 264 TDTETLEI---VKTGELKILGKHNYENVMAASAMAYYTGVPVEVIHKAITEFRAVAHRIE 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++        R  ++ G G D++      +     
Sbjct: 321 FVDEINGIAYYNDSKGTNPDAAIKGIQA-----MNRPTLLIGGGYDKESSYEEWIQSFDG 375

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++       +  EKI  E+ H  G    I   N  EA+    +   K D +++
Sbjct: 376 KVKYLVLI------GQTREKI-QEVAHKCGFVNTILADNLEEAVSMCTQKAEKGDAVLL 427


>gi|190570659|ref|YP_001975017.1| murC-like protein [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|190356931|emb|CAQ54315.1| murC-like protein [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
          Length = 322

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 103/300 (34%), Gaps = 18/300 (6%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  +  +  +  G   +R  G +    +  ++  D +      +     ++++   
Sbjct: 16  CQCCKSVYYGMSNAKGGRSYYRCPGKRFGECNSKSIRADIL------EEVVWEEVKMLRG 69

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            + KE   +   D      ++++        +          LK++     K+ +     
Sbjct: 70  HITKEKCDLSEVDWETKFNIIRKLVQR--IEIDDDNVHMVFRLKELALERQKEDIQPCTR 127

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                 L    G  ++ NAL A  + + +GI    + + L +   V  RF  +     G 
Sbjct: 128 IIKNVVLSNAIGMHKISNALAAISVAVKLGISDEEIKKGLLEFKGVARRFSLIADIK-GV 186

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIV 415
           ++  DYAH  N ++  L   R  T G++  +       R +       +I   + D  I+
Sbjct: 187 KLIEDYAHHPNEIQATLSAARLTTKGKVTGIIEPLRFARVRNFFDEFVRI-FMMFDYVIL 245

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           T  +P  + P      + I+  +I      ++  N    I   I    +  DV++  G G
Sbjct: 246 TPVHPPEDKPIPGCGIDDIQKALISNGFNDVKIMNDALLISHFISNSTSSGDVVLFIGAG 305


>gi|154250395|ref|YP_001411220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769434|sp|A7HNT0|MURD_FERNB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154154331|gb|ABS61563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
          Length = 420

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/430 (14%), Positives = 133/430 (30%), Gaps = 76/430 (17%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S +                 V      F+              I+AVTG+ GKS
Sbjct: 61  ADVILTSPSVPHNHPILLKAQQMGKYVDTEITYFMKFL------DWKPKIIAVTGSVGKS 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +  + +  +  +S  SS   G                     +  A   L  +   ++ V
Sbjct: 115 TTVAMINHLISKS-ASSQISGNFG------------------IPIAQVLLEGKKPEYIVV 155

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L        K      TN+  +H+D+H + + Y ++K ++ +    ++      
Sbjct: 156 EISSFQLYW--TPFFKPNVAVITNIYPNHLDWHPSMEHYVDSKFKITKFQDNEDHFVYNP 213

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D    K +                               +   T+  + ++  F     
Sbjct: 214 KDMETFKRLA-------------------------LVQAKRVPFTVDFKFEEIPFHIRTK 248

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
              +     +AA   +   +     +  LE    +P R E+ GT +         A    
Sbjct: 249 QNMEN----IAAAKTVLKVLGLPFSMSMLEDFTPLPHRMEYCGTINGAHYYNDSKATN-- 302

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
               ++K +    +   +++ G G + D  K   +            +      + +P  
Sbjct: 303 -AAAVVKALENFDNNLYLIIAGKGKNEDYSK---LANEISKKCKFVAIVGPISDAVEPY- 357

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV--AGKGHETVHIVTNGEKK--MS 483
               +      +    N  EA+    +M  + D +++  AG    +     N E++    
Sbjct: 358 ----LKERNVNYKRFSNIEEAVFEISKMAKEGDYVLLGPAG---ASYDAYKNFEERGNHF 410

Query: 484 VDCDIIREIL 493
              +I+++++
Sbjct: 411 --KEIVKKLM 418


>gi|319776001|ref|YP_004138489.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3047]
 gi|329123871|ref|ZP_08252426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus aegyptius
           ATCC 11116]
 gi|317450592|emb|CBY86809.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3047]
 gi|327468712|gb|EGF14190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus aegyptius
           ATCC 11116]
          Length = 453

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 75/268 (27%), Gaps = 14/268 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAIFATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            G  RI+ V     +  +    +  +  +    AD   +      S +   I  +    +
Sbjct: 350 GGGVRILAVLEPRSNTMKIGVHKDEIAPVLGR-ADAVFMLQPEQLSWEVADIANQ---CV 405

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  N    +   +      D ++V
Sbjct: 406 QPAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|257877577|ref|ZP_05657230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC20]
 gi|257811743|gb|EEV40563.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC20]
          Length = 455

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D ++      TN+   HIDYH ++  Y  AK RL + +   +   I 
Sbjct: 171 MELSSFQL--MGIDTLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTADDYLVIN 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + +  +++       +         L  +     +  +              +
Sbjct: 229 WNQ-PELEALSAKSNAQIIPFSTKEKVAGAYMLDGILYYKEEVIMA--------ADELGV 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL A  +     + +  + + L+    VP R ++V T ++        A   
Sbjct: 280 PGDHNIENALAAIAVGKLCDMPNEAIKQALQTFTGVPHRTQYVTTINQVKFFNDSKATN- 338

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + ++I +   G DR      ++  +    A +          E  E
Sbjct: 339 --ILATEMALGGFDNEKLI-LLAGGLDRGNSFDDLVPALKGLKAIVLF-------GETKE 388

Query: 427 KIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+ A     GI       N   A+  A  +    D +++
Sbjct: 389 KLAAAAQAAGIKTIEMTDNVETAVPLAFSLSAAGDTILL 427


>gi|159044992|ref|YP_001533786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Dinoroseobacter shibae DFL 12]
 gi|189082879|sp|A8LS92|MURD_DINSH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157912752|gb|ABV94185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dinoroseobacter
           shibae DFL 12]
          Length = 464

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 74/424 (17%), Positives = 136/424 (32%), Gaps = 66/424 (15%)

Query: 61  PQAIAQGAEAIVVSSA----YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE- 115
             A   G  A++ S      Y   + +  +  +  I V ++   F   FA+  + +    
Sbjct: 61  ADAFD-GVAALITSPGIPHLYPTPNPTIALAMSLGIPVDNDIGLFFRSFATPDWDEFDSL 119

Query: 116 -NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++AVTG++GKS+ ++ +  +   +G  +   G                   + L    
Sbjct: 120 PRVIAVTGSNGKSTTSALIHHVLTAAGRPTQLAGNIGRGVLDIDPGEDGGIVVLEL---- 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                          SS+  +  R   +      FTNL  DH+D H     YF AK RLF
Sbjct: 176 ---------------SSYQTELAR--ALTPDIAVFTNLSPDHLDRHGGMGGYFAAKRRLF 218

Query: 235 EELLPKESPAIIYADDAYSKEVMKR-----AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
              +     A+I  D+     +  +     A +   RV S    G    +        + 
Sbjct: 219 T--IGGPDRAVIGTDEPEGLFLASQLSVAPADDRVIRVTSAKPSGPGWVVSARKGFLAEH 276

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           +        D   +  LPG     NA  A   C ++G+    +         +P R + V
Sbjct: 277 RKGRQTGSIDLRPIPGLPGAHNHQNAACAYAACRSLGLAPRQIEAGFASFKGLPHRSQIV 336

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--------GRIIVVFGCGGDRDQGKRPI 401
           GT +    +    A   +S    L+    I          G +  +    G     K  +
Sbjct: 337 GTANGVTFVNDSKATNVDSAAKALQAFDRIRWIAGGLEKEGGLAALTPHLGG--VRKAYL 394

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           +G+ A + A     T        P ++   +   +   + +                 D 
Sbjct: 395 IGRSAAEFALGIPDT--------PHEVCETMARAVAAAVAEA-------------EPGDT 433

Query: 462 LVVA 465
           +++A
Sbjct: 434 ILLA 437


>gi|291283556|ref|YP_003500374.1| Tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O55:H7 str. CB9615]
 gi|209764818|gb|ACI80721.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|209764824|gb|ACI80724.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|290763429|gb|ADD57390.1| Tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320641143|gb|EFX10622.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. G5101]
 gi|320646358|gb|EFX15281.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H- str. 493-89]
 gi|320651628|gb|EFX20008.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H- str. H 2687]
 gi|320657380|gb|EFX25182.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662915|gb|EFX30239.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667659|gb|EFX34570.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. LSU-61]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++T+  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKTLPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|205355172|ref|YP_002228973.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274953|emb|CAR40023.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326630330|gb|EGE36673.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 457

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|15802862|ref|NP_288889.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 EDL933]
 gi|15832453|ref|NP_311226.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168748169|ref|ZP_02773191.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755072|ref|ZP_02780079.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761242|ref|ZP_02786249.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168767946|ref|ZP_02792953.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772954|ref|ZP_02797961.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780175|ref|ZP_02805182.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787227|ref|ZP_02812234.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC869]
 gi|168798490|ref|ZP_02823497.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC508]
 gi|195935694|ref|ZP_03081076.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208806589|ref|ZP_03248926.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813635|ref|ZP_03254964.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821737|ref|ZP_03262057.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398810|ref|YP_002271724.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327399|ref|ZP_03443482.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254794208|ref|YP_003079045.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261223230|ref|ZP_05937511.1| bifunctional folylpolyglutamate synthase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259220|ref|ZP_05951753.1| bifunctional folylpolyglutamate synthase [Escherichia coli O157:H7
           str. FRIK966]
 gi|12516674|gb|AAG57444.1|AE005463_7 dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13362669|dbj|BAB36622.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771040|gb|EDU34884.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017290|gb|EDU55412.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002048|gb|EDU71034.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357609|gb|EDU76028.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362861|gb|EDU81280.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368347|gb|EDU86763.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372902|gb|EDU91318.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC869]
 gi|189378959|gb|EDU97375.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC508]
 gi|208726390|gb|EDZ75991.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734912|gb|EDZ83599.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741860|gb|EDZ89542.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160210|gb|ACI37643.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209764820|gb|ACI80722.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|209764822|gb|ACI80723.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|209764826|gb|ACI80725.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|217319766|gb|EEC28191.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254593608|gb|ACT72969.1| bifunctional folylpolyglutamate synthase [Escherichia coli O157:H7
           str. TW14359]
 gi|320192061|gb|EFW66706.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. EC1212]
 gi|326339668|gb|EGD63479.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. 1125]
 gi|326344130|gb|EGD67891.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. 1044]
          Length = 422

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++T+  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKTLPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|37527056|ref|NP_930400.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786489|emb|CAE15544.1| FolC bifunctional protein [Includes: Folylpolyglutamate synthase
           (Folylpoly-gamma-glutamate synthetase) (FPGS);
           Dihydrofolate synthase] [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 432

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/381 (12%), Positives = 104/381 (27%), Gaps = 41/381 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ V+GT+GK +    ++ I   +GL          +    +        P    
Sbjct: 47  NPAPKVITVSGTNGKGTTCCTIESILLAAGLRVGVYSSPHLVRYTERVRIQGKELPEQEF 106

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +          +S+       +   L  ++L   +  ++    +       A      
Sbjct: 107 CRVFADIESRRGDISLTY----FEYGTLAALQLFKQACLDVVILEVGLGGRLDATNIVDA 162

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV------CAI 285
            +                D       K       R   VG       + +V         
Sbjct: 163 DIAAITSIAIDHIDWLGADREHIGREKAGIFRKDRFAVVGEPDMPSSIAEVAGELGAKLF 222

Query: 286 HNKQQVTISVEGKDFDFLF----------PLPGEFQVYNALVAAGLCIAIGID-----SA 330
                   S + K++ +            P         A+      +          + 
Sbjct: 223 RCGIDWRFSQQNKNWHWQSDDRLFSNLPLPNVPLMNAATAMGVICCLLRQDDKVSRAINE 282

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG---RIIVV 387
             +    +   +PGRF+ V        + +D AH  ++   +++ +  +      RI+ V
Sbjct: 283 SAIHQGLQNAQLPGRFQIVREKPL---LILDVAHNPHAAAYLVQKLAQLPRQPGSRILGV 339

Query: 388 FGCGGDRDQGKRP--IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
            G  GD+D       +  +I              P +E        +   +       + 
Sbjct: 340 VGMLGDKDIAGTLTCLSQQINEWYC--------APLTEQRGADAQTLAQHLGQPRIFTDV 391

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A   A+   ++QD++VV G
Sbjct: 392 ESAWHQAMVDADEQDIVVVCG 412


>gi|69248544|ref|ZP_00604765.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO]
 gi|257878422|ref|ZP_05658075.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257882840|ref|ZP_05662493.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|257889379|ref|ZP_05669032.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|257894392|ref|ZP_05674045.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|258616059|ref|ZP_05713829.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium DO]
 gi|260560011|ref|ZP_05832189.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68]
 gi|261207887|ref|ZP_05922572.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6]
 gi|289566955|ref|ZP_06447359.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF]
 gi|293559957|ref|ZP_06676465.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162]
 gi|293569017|ref|ZP_06680330.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071]
 gi|294623289|ref|ZP_06702154.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317]
 gi|314937785|ref|ZP_07845102.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a04]
 gi|314941669|ref|ZP_07848549.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C]
 gi|314948916|ref|ZP_07852285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082]
 gi|314950965|ref|ZP_07854032.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A]
 gi|314992967|ref|ZP_07858363.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B]
 gi|314996414|ref|ZP_07861457.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a01]
 gi|68194390|gb|EAN08897.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium DO]
 gi|257812650|gb|EEV41408.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257818498|gb|EEV45826.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|257825739|gb|EEV52365.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|257830771|gb|EEV57378.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|260073846|gb|EEW62170.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium C68]
 gi|260078270|gb|EEW65976.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium TC 6]
 gi|289161254|gb|EFD09150.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium D344SRF]
 gi|291588450|gb|EFF20285.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1071]
 gi|291597317|gb|EFF28503.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium U0317]
 gi|291606045|gb|EFF35471.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1162]
 gi|313589396|gb|EFR68241.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a01]
 gi|313592490|gb|EFR71335.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133B]
 gi|313596820|gb|EFR75665.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133A]
 gi|313599560|gb|EFR78403.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0133C]
 gi|313642816|gb|EFS07396.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium
           TX0133a04]
 gi|313644706|gb|EFS09286.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium TX0082]
          Length = 444

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 90/330 (27%), Gaps = 40/330 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AVTG+ GK+S    +  +      +S+ IG           +           +
Sbjct: 103 QNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-----DGTGHGDPQAEFFSFEACE 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              +  +    +  +                      TN+  DH DY+ +    F A   
Sbjct: 158 YRRHFLAYSPDYAIM----------------------TNIDFDHPDYYTSIDDVFTAFQT 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +  +   AI    D     + K   N       V                      
Sbjct: 196 ----MAGQVKKAIFAYGDDAY--LRKLKANVPIYYYGVTENDDIQARNIERTTSGSAFDV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +     F  P  G+  + NAL    +     +D   V E +     V  RF      
Sbjct: 250 YHGDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVKRRF--SEKI 307

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                +  DYAH    ++  +   R       II VF      R         + ALDLA
Sbjct: 308 VADMTVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 366

Query: 411 DIAIVTD--DNPRSEDPEKIRAEIIHGIPG 438
           D   + D   + R E       ++   I  
Sbjct: 367 DKVYLCDIFGSAREEQGNVKIEDLGAKIKK 396


>gi|325959936|ref|YP_004291402.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Methanobacterium sp. AL-21]
 gi|325331368|gb|ADZ10430.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Methanobacterium sp. AL-21]
          Length = 470

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/411 (14%), Positives = 132/411 (32%), Gaps = 47/411 (11%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSL----------FASRLYGKHPENILAVTGT 123
           S        + T+  N P+       +FL+            +  +  +   + + +TGT
Sbjct: 67  SEEIEYAYVAPTVPLNAPVW------EFLAEKNIEVLSNEYISDIINKQLEIDTIGITGT 120

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S    V +I + +G + +                      I          S  V 
Sbjct: 121 LGKTSTTHTVAEIFRAAGYNVWSCSS---------RMGNLLSEVIVDGIVNGLHKSNDVA 171

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH-IDYHQTQQAYFNAKMRLFEELLPKES 242
            + +   +  L    +  ++L  G  TN+  DH  ++  + + Y   K+ + +      S
Sbjct: 172 VLELPHGTSRL----MSKVELKVGIITNIFPDHLDEFDYSMEKYVERKLFITQSSEILIS 227

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
                 +    ++ +    +        G     +            +   +   K    
Sbjct: 228 GIQCKENIESFRDDVIYYCHEHELCKVQGTLENGLLNINYNIPELGLEGNFNTPFK---- 283

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                  +   N++ AA   +A GI    + + L     + G  E++G N +   ++ D 
Sbjct: 284 ----LRGYYFDNSIGAAAAALAYGISEESIKKGLSNFKGIEGHMEYIG-NYKDREVHFDA 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A     L      + +  S  ++VV       +   +  +G++    A + I +  N  +
Sbjct: 339 AFVPAGLIN---TLESFDSENLVVVVDNPDSTNPRDKVKVGEVIGKYAKVIICSGYNETT 395

Query: 423 EDPE-KIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +  + K   ++I G            +   A   AI+     D++V  G G
Sbjct: 396 KKFDVKAANDVIKGAQKSPAIKLATEDMFVAGELAIKHSEPGDIVVHVGPG 446


>gi|291538690|emb|CBL11801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis XB6B4]
          Length = 454

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 99/302 (32%), Gaps = 25/302 (8%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +        +   T    E SS  L+            +  N+  DH+D H T +AY 
Sbjct: 144 IGIPYTSIVEKTTEQTVTVTEISSFQLETMETF--HPSVSAILNITPDHLDRHHTMEAYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  + +    +++  + Y +D   ++  +          S     + I+L++      
Sbjct: 202 RAKEGITKCQTKEDTCVLNY-EDEILRKFAETLKVNVLFFSSKRPLEEGIYLQENTIWIA 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            ++     +         L G     N + A+G  + +G    +V   L++   V  R E
Sbjct: 261 GKETE--RQRLIDVGELKLLGIHNYENVMAASGTALCMGAPIDVVQRVLKEFWGVKHRIE 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM----G 403
           FV             A   ++    + +       R  ++ G G D++      +    G
Sbjct: 319 FVRDLQGVLYYNDSKATNPDAAIRGIGS-----MNRKTLLIGGGYDKNLEFDAWIESFDG 373

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           K+   L  +   T D        KI      HG    +      EA+     +    + +
Sbjct: 374 KVKCLL--LIGQTKD--------KIAVCARKHGFENIVCCDTLNEAVNICYRLAKPGEAV 423

Query: 463 VV 464
           ++
Sbjct: 424 LL 425


>gi|260172408|ref|ZP_05758820.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides sp. D2]
 gi|315920704|ref|ZP_07916944.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694579|gb|EFS31414.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 458

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 108/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQSHVECTAF-LGGISKNYGTNLLLSQASPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T+   DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMTV-------------------ITSTDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPDTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDF-KL 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
            +       DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 323 KNDRIVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+++L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEEIL 425


>gi|207859563|ref|YP_002246214.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711366|emb|CAR35744.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 457

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|116873037|ref|YP_849818.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|123461107|sp|A0AJ57|MURC_LISW6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116741915|emb|CAK21039.1| UDP-N-acetylmuramate-alanine ligase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 447

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 72/428 (16%), Positives = 133/428 (31%), Gaps = 60/428 (14%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG               T S    A+  +  + +   H    
Sbjct: 115 TTGLLSHVVGAIRPTSYLIG-------------DGTGSGTKNAQYFALEACEYQRHFLAY 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             ++ +               TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 162 KPTYAI--------------MTNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K + +          + +F     +      +      +     F  P  G
Sbjct: 204 GDDEE--LRKLSLDIPIIYFGFDEENEFQAKNVIKETTGTRFDVYHRDEFLASFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V + L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVEAVKKELKTFEGVKRRFSIT--EKGNQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD--DNPRSEDP 425
           +   +   R     + +V         + +  + G   +L+LAD   + D   + R +  
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTG 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHET-----VHIVTNGE 479
               A++ H   G               E+L     V++  G G           V + E
Sbjct: 380 NLTIADLAHKTKGNHIIKE-----EHTEELLKYPGAVILFMGAGDVQKFQAAYEKVLDNE 434

Query: 480 KKMSVDCD 487
                D  
Sbjct: 435 VVTKSDFK 442


>gi|319957077|ref|YP_004168340.1| hypothetical protein Nitsa_1340 [Nitratifractor salsuginis DSM
           16511]
 gi|319419481|gb|ADV46591.1| hypothetical protein Nitsa_1340 [Nitratifractor salsuginis DSM
           16511]
          Length = 328

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK+ DLI      L N+  +  ++      +        ++ G +F A     ED    I
Sbjct: 3   MKISDLINITGGTLDNEPQVQAIESATVFPS-------KVERGDLFFAAR--NED----I 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           P A+ +GA A++        +    +      + VD+ ++        + 
Sbjct: 50  PAAVERGAYAVI-----YAGERPRDLDEEIAWIEVDSVKEAAFRLLRYVM 94


>gi|239978973|ref|ZP_04701497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           albus J1074]
 gi|291450852|ref|ZP_06590242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces albus
           J1074]
 gi|291353801|gb|EFE80703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces albus
           J1074]
          Length = 476

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 134/408 (32%), Gaps = 51/408 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S  +          +   + VV +        A RL  +   + L VTGT+GK++ 
Sbjct: 78  LVVTSPGWKPDSPLFAAAAEAGVEVVGDV-----EIAWRLRPEGAADWLCVTGTNGKTTT 132

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I   +GL +  +G   T                        L+++    ++VE 
Sbjct: 133 TRMLAAILTAAGLRTEAVGNIGTPLIDVV------------------LAAEPYDVLAVEL 174

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +A   A  +       + +     AD
Sbjct: 175 SSYQLHW--TPSLRAHSAAVLNLAPDHLDWHGSMEA--YAADKGRIYEGNRVACVYNTAD 230

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----LF 304
            A    V       GCR +             V       +  +    +           
Sbjct: 231 PATEALVRAADVEEGCRAVGFTLGAPGPSELGVVEGLLVDRAFVPDRHRQAQELAEVADV 290

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AA L  A G+++  V + L      P R E V        +    A 
Sbjct: 291 DPPAPHNIANALAAAALARAYGVEARAVRDGLRAFAPDPHRIEKVAEIDGVTYVDDSKAT 350

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L         R IV    G  +      ++   A  L  + ++       +D
Sbjct: 351 NTHAAEASLNAY------RPIVWIAGGLAKGAVFDDLVTSAADRLRGVVLI------GQD 398

Query: 425 PEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
              IR  +    P       +R +      A+  A ++    D +++A
Sbjct: 399 RALIREALARHAPDVPVVDLDRTDTGAMSAAVTAARDLAEAGDTVLLA 446


>gi|213019092|ref|ZP_03334899.1| murC-like protein [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|212995201|gb|EEB55842.1| murC-like protein [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 332

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 103/300 (34%), Gaps = 18/300 (6%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  +  +  +  G   +R  G +    +  ++  D +      +     ++++   
Sbjct: 26  CQCCKSVYYGMSNAKGGRSYYRCPGKRFGECNSKSIRADIL------EEVVWEEVKMLRG 79

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            + KE   +   D      ++++        +          LK++     K+ +     
Sbjct: 80  HITKEKCDLSEVDWETKFNIIRKLVQR--IEIDDDNVHMVFRLKELALERQKEDIQPCTR 137

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                 L    G  ++ NAL A  + + +GI    + + L +   V  RF  +     G 
Sbjct: 138 IIKNVVLSNAIGMHKISNALAAISVAVKLGISDEEIKKGLLEFKGVARRFSLIADIK-GV 196

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIV 415
           ++  DYAH  N ++  L   R  T G++  +       R +       +I   + D  I+
Sbjct: 197 KLIEDYAHHPNEIQATLSAARLTTKGKVTGIIEPLRFARVRNFFDEFVRI-FMMFDYVIL 255

Query: 416 TDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           T  +P  + P      + I+  +I      ++  N    I   I    +  DV++  G G
Sbjct: 256 TPVHPPEDKPIPGCGIDDIQKALISNGFNDVKIMNDALLISHFISNSTSSGDVVLFIGAG 315


>gi|254828161|ref|ZP_05232848.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
 gi|258600547|gb|EEW13872.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
          Length = 447

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 110/350 (31%), Gaps = 47/350 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG               T                   + ++E
Sbjct: 115 TTGLLSHVVGAIRPTSYLIG---------DGTGNGTKDA---------------EYFALE 150

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A  +   Q      K      TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 151 ACEY---QRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K   +        G + +F     +      +      E     F  P  G
Sbjct: 204 GDDAE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V   L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVKRRFSIT--EKGNQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD 417
           +   +   R     + +V         + +  + G   +L+LAD   + D
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCD 369


>gi|145588960|ref|YP_001155557.1| FolC bifunctional protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047366|gb|ABP33993.1| FolC bifunctional protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 441

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/394 (13%), Positives = 115/394 (29%), Gaps = 44/394 (11%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ-------- 158
           + L       ++ V GT+GK S  ++++ I   SG           ++   +        
Sbjct: 41  AALDLHFDCPVITVAGTNGKGSTCAYLESILLSSGYRVGCHMSPHLMTFNERARINGEEV 100

Query: 159 -------------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
                        + R++      L        +           +  L+     RLD +
Sbjct: 101 KDNLLLEHFAAVENARVSLVDAPTLTYFEFTTLAIMHLFAKSNLDAVVLEVGMGGRLDAV 160

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            ++      +    ID+         A       +      A+          +      
Sbjct: 161 NIVDADCAIVTSIDIDHADFLGGTREAIGLEKAGIFRPGHIAVCGDPVPPQSLI----DY 216

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A      +  QG+  + +                G  +  L            + A    
Sbjct: 217 AEKLGCDLWLQGRDYNFQGDKQQWGWAGRKKRFSGLGYPALRGANQILNASAVIAALMAL 276

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
                  A  + +   L  +PGRF+ +        + +D AH  ++   + + +  +   
Sbjct: 277 HQRLPVGAQDIRNGFALVELPGRFQVLPGQPT---VVLDVAHNPHAAATLGQGLDKMGYH 333

Query: 383 RI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-------I 433
                +FG   D+D      + K  L++ D    TD   PR+     +  ++        
Sbjct: 334 PYTYAIFGAMADKDIEG---VIKPLLNIVDFWFCTDLPTPRAASAMALAKKLELMGVKPK 390

Query: 434 HGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAG 466
           +G  G IE   +   A + A+ +  + D +V  G
Sbjct: 391 NGADGGIECFADPASAYQKALSVAGEGDRIVTFG 424


>gi|307132582|ref|YP_003884598.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
 gi|306530111|gb|ADN00042.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
          Length = 486

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 76/424 (17%), Positives = 137/424 (32%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA +  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVI-----RRAEMLAELMRFRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVTSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGH 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           A++  DDA  +E++ +                   L     +  +   T++ +GK   + 
Sbjct: 227 AVMCLDDAVIRELLPKVGRHITTYGFSDDADV--RLADYRQVGAQGLFTLARQGKPLLNV 284

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------ 356
               PG     NA  A  +    GID   +L  L +      RF+F+G            
Sbjct: 285 TLNAPGRHNALNAAAAVAVATEQGIDDDAILRALARFQGTGRRFDFLGEFPLQPVNGKSG 344

Query: 357 --RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DY H    ++  +K  R     + +V+        R +        +     D+
Sbjct: 345 SAMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQ-VDV 403

Query: 413 AIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            ++ D     E P        +   I   G    I   +         + L   D+++V 
Sbjct: 404 LLMLDVYSAGEAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|258622015|ref|ZP_05717044.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio mimicus
           VM573]
 gi|258585768|gb|EEW10488.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio mimicus
           VM573]
          Length = 421

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 110/375 (29%), Gaps = 36/375 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +           L 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINGQ----DLP 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             +   +   + H   E S    +   L  + L      ++    +       A    + 
Sbjct: 102 DEMHTQAFAHIEHQRGEVSLSLFEFGTLAALYLFQQQKVDVLLLEVGLGGRLDATNVVEH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +               +D       K       +    G          H   + A  +
Sbjct: 162 DVSVITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLH 221

Query: 288 KQQVTIS--------VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           + ++  S           +   F         +     A  L         +    + + 
Sbjct: 222 QVEIQFSYEKTSETTWHWRSGRFELTDLPLPSLPLPNAATALMALGCSGLEISDIDIVEG 281

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGK 398
                    +   SR   I +D AH  +S   +++ ++     + I +V G   D+D   
Sbjct: 282 LRNAQLAGRMQVISREPTIVLDVAHNPHSAHYLVEQLKQRYPHQTIHLVLGMLHDKD--- 338

Query: 399 RPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                 IA  +A++  V           PR+   E++   +  G   +    N + A   
Sbjct: 339 ------IASTVAELKPVVSHWYPASLSGPRAATAEQLCQYLPAGNTQY---ANPVAAFEA 389

Query: 452 AIEMLNKQDVLVVAG 466
           A+   +  DV+VVAG
Sbjct: 390 ALTQTSAHDVIVVAG 404


>gi|156935392|ref|YP_001439308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533646|gb|ABU78472.1| hypothetical protein ESA_03250 [Cronobacter sakazakii ATCC BAA-894]
          Length = 438

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 132/398 (33%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +              +    ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSAAAEAGVEIVGDIE--------LFCREAQAPVIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    +                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLEEGREL--------------------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A       +    +  ++ 
Sbjct: 158 ELSSFQLET--TFSLKAAAATILNVTEDHMDRYPLGLQQYRAAK---LRIYENATVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG         ++          +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGIDVGDYHLNRQQGEIWL-------RVRGEKVLNVKEMKLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRFQLAYEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +T D  R     +
Sbjct: 326 STEAALNGL--HLDGTLHLLLGGDG-----KSADFSPLAH------YLTGDRVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
               +    P   E+ +   EA++     +   D++++
Sbjct: 373 DGDALAALRPEISERMDTMEEAMKVIAGRVQPGDMVLL 410


>gi|152996067|ref|YP_001340902.1| FolC bifunctional protein [Marinomonas sp. MWYL1]
 gi|150836991|gb|ABR70967.1| FolC bifunctional protein [Marinomonas sp. MWYL1]
          Length = 418

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 103/366 (28%), Gaps = 18/366 (4%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     +    ++ V GT+GK S  + + Q       S         I+   +     +
Sbjct: 32  LARLNLSRPKHKVITVAGTNGKGSTCAMLTQYLCAQNYSVGTYTSPHFIAFNERIALNDS 91

Query: 165 PS-------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
           P           + +      S      S  A+    DQ  LD   L  G    L   ++
Sbjct: 92  PCDDEVLCRAFEVVEEAREGISLTYFEFSTLAALWIFDQSNLDYWVLEVGLGGRLDSVNM 151

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM--KRAHNAGCRVLSVGYQGK 275
                      +   +       +  A   A  A   +++     +       +    G 
Sbjct: 152 MDTDVAVVTSISLDHIDWLGDNLDVIAREKAGIARKDKLLISGVVNPPSTIASTALEVGA 211

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
            +  K V         T S  G    F         + NA     + + +G   A     
Sbjct: 212 HLRQKGVDFHFELDGSTWSWSGDGVQFEKLPIPALPLQNAATVIAVLVYMGFSPA--YAD 269

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L  L             +    +Y+D AH   +   + + I  +   + + V G   D+D
Sbjct: 270 LVTLFDSAQLMGRFQKVATSPDVYIDVAHNPEAAIELAQRISNLPI-QPVAVCGMLKDKD 328

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP----GFIEKGNRIEAIRT 451
                +M  +A   +D        PR     ++   I+H  P          +  +A  +
Sbjct: 329 IA--SVMEHLAGSFSDWFCCDLAGPRGAKASELIKHIVHSSPSLALNAKAFQSVGDAFSS 386

Query: 452 AIEMLN 457
           A+    
Sbjct: 387 ALVKAQ 392


>gi|221134088|ref|ZP_03560393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Glaciecola sp. HTCC2999]
          Length = 453

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 133/408 (32%), Gaps = 48/408 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+++G      + A           ++ P  ++DN  K                +LA
Sbjct: 67  IGNAMSRG------NPAVEYVLDRNLPYTSGPQWLLDNLLK-------------DRWVLA 107

Query: 120 VTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           V GT GK+S +S +  I + +G    F IG        +          I   +  S   
Sbjct: 108 VAGTHGKTSTSSVLAWILEFAGYTPGFLIGGVPENFGVSARIGEGNFFVIEADEYDSAFF 167

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +    V                 +       NL  DH D      A    +       +
Sbjct: 168 DKRSKFV---------------HYRPRTLVLNNLEFDHADIFDDLNAIKK-QFHHLVRSV 211

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P     +    D   ++V++         +S  +  +             Q         
Sbjct: 212 PANGLILSEKHDNNMQDVLEMGCWTTQEFISKDWTAQKTQADGGRFEVYYQGQL------ 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
             +  + L G+  V+N L+A      +G+ + + +E L +   V  R E  G       +
Sbjct: 266 QGEVNWSLIGDHNVHNGLMAIAAAHNVGVTTDIAIESLSEFVNVKRRMEIKG-TVANITV 324

Query: 359 YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVT 416
           Y D+AH   +++  ++ ++  +   RI+ +     +  + G        +   AD   + 
Sbjct: 325 YDDFAHHPTAIKTTVEGLKANVGVQRILAILEPRSNTMKLGIHKDQLTESWAQADEVYIF 384

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    S   +++  + +  +  + +    +EA+   ++     D ++V
Sbjct: 385 EPASLSWSIDEVARDSVAPVHPYQDVDKLVEAV---VKEAQPSDHILV 429


>gi|2149895|gb|AAC45626.1| D-glutamic acid adding enzyme [Staphylococcus aureus]
          Length = 450

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 126/353 (35%), Gaps = 47/353 (13%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S        T          
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGYVASKVAQEVKPT---------- 160

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    ++  K      TN+   H+DYH+  + Y NAK +++
Sbjct: 161 --------DYLVTELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHENLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +    ++     Y    + ++V++        +     Q       K   I  K    I+
Sbjct: 211 KNQTEEDYLICNY----HQRQVIESEELKAKTLYFSTQQEVDGIYIKDGFIVYKGVRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         L       N L A   CI  G+    +++ L     +  R ++VGTN  
Sbjct: 267 TEDLVLPGEHNL------ENILAAVLACILAGVPIKAIIDSLTTFSGIEHRLQYVGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR---PIMGKIALDLAD 411
                   A  + + +  L +       + I+    G DR        P M  ++ +   
Sbjct: 321 NKYYNDSKATNTLATQFALNSF-----NQPIIWLCGGLDRGNEFDELIPYMENVSREW-- 373

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  D+ +      +           IE  N  +A+    +++   DV+++
Sbjct: 374 ---LYSDSRK----LSLLNYGNSQGKSVIEANNVEDAVDKVQDIIEPNDVVLL 419


>gi|238791173|ref|ZP_04634812.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
 gi|238729306|gb|EEQ20821.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
          Length = 491

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 227 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLK-RLDKPLMTVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 286 LNAPGRHNALNAAAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLMPVNGKEGS 345

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         ++LN  D+++V G
Sbjct: 405 LMLDVYAAGEPPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|159900026|ref|YP_001546273.1| UDP-N-acetylmuramate--alanine ligase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893065|gb|ABX06145.1| UDP-N-acetylmuramate--alanine ligase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 443

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 95/276 (34%), Gaps = 18/276 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +    G  TNL  DH+D + +Q  Y  A      +   +     +  DD  ++ V+   
Sbjct: 164 ALSPAIGIITNLDWDHVDIYPSQAEYDAAFREFAIKPSLQHLV--LCGDDLGTQRVLADV 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                    +     +                IS   +       + GE  V NAL+A  
Sbjct: 222 ---PAIRCGLTEHNDWRATAVQATPDGMLFELISPAAEPMTVQLAVSGEHNVRNALLALA 278

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
              + GID A+ +  +        RFE  G      R++ DYAH    +   L   R   
Sbjct: 279 AAHSYGIDLAVAVAAIAHYQGAARRFEPKGQVGA-VRVFDDYAHHPVEIRATLAAARKRF 337

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSE----DPEKIRAEIIH 434
             + IV +       R +       + A + AD+  +       E    DP    A+I+ 
Sbjct: 338 PAQRIVAYFQPHTFSRLEAFLADF-QTAFEQADLVRIGAVYGARETSKGDP---TAQIVA 393

Query: 435 GI--PGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           G+  P  +  G+  +A    +  +   DV++  G G
Sbjct: 394 GMQHPNALAVGDLDQAFEQLLRDVQAGDVVLTLGAG 429


>gi|46907836|ref|YP_014225.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226224206|ref|YP_002758313.1| UDP-N-acetyl muramate-alanine ligase [Listeria monocytogenes
           Clip81459]
 gi|254824335|ref|ZP_05229336.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|254852227|ref|ZP_05241575.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|254931544|ref|ZP_05264903.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|254994071|ref|ZP_05276261.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J2-064]
 gi|300766118|ref|ZP_07076085.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|59798317|sp|Q71Z62|MURC_LISMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509776|sp|C1KVQ2|MURC_LISMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46881105|gb|AAT04402.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876668|emb|CAS05377.1| Putative UDP-N-acetyl muramate-alanine ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605535|gb|EEW18143.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|293583099|gb|EFF95131.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|293593569|gb|EFG01330.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|300513199|gb|EFK40279.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|332312046|gb|EGJ25141.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes str.
           Scott A]
          Length = 447

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 134/429 (31%), Gaps = 60/429 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +   +   +        +   +   +  +   T+  + 
Sbjct: 115 TTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEY-----FALEACEYQRHFLAYKPTYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 169 ---------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K   +        G + +F     +      +            F  P  G
Sbjct: 204 GDDAE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V + L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVKRRFSIT--EKANQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD--DNPRSEDP 425
           +   +   R     + +V         + +  + G   +L+LAD   + D   + R +  
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTG 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETVHIVTNGEKKMS 483
               A++ H   G               E+L   + V++  G G  +             
Sbjct: 380 NLTIADLAHKTKGNHIIKE-----EHTEELLKYPEAVILFMGAGDVQKFQAAYEKVL--- 431

Query: 484 VDCDIIREI 492
            D +++ E 
Sbjct: 432 -DHEVLTEA 439


>gi|313673682|ref|YP_004051793.1| UDP-N-acetylmuramate--l-alanine ligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940438|gb|ADR19630.1| UDP-N-acetylmuramate--L-alanine ligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 460

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 7/238 (2%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +       TN+  +H++ ++       +    F   +P     II  DD    +++   
Sbjct: 170 MLYPTVSVITNIDFEHMESYKDFDDVKQSFA-EFANKVPFYGANIICLDDPNVADIIPLL 228

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                               K+    +   V++  +         +PGE  V NAL A G
Sbjct: 229 KKKFVTYGFSARADIRGTDVKIEGFGSSFNVSVHGKP-WGRIKLSVPGEHNVLNALGAIG 287

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
             +   I    + + LE    V  R      +    ++  DY H    +   LK IR   
Sbjct: 288 AGLEFDIPYEDIKKGLEDFSGVQRRLTI-RYDKDEIKVIDDYGHHPTEIIATLKAIRDAY 346

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK-IRAEIIHG 435
               ++V        + K  +M + +     AD   +TD    SE P   I ++++ G
Sbjct: 347 DDHKLIVIFQPHRYSRTK-LLMNEFSKAFFDADELFITDIYAASEKPIDGITSDVLVG 403


>gi|295109460|emb|CBL23413.1| folylpolyglutamate synthase/dihydrofolate synthase [Ruminococcus
           obeum A2-162]
          Length = 433

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 16/170 (9%)

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKLHVVPGRFEFVG 350
           +    +  F  P   ++QV N+++A      +          +    +     GR E V 
Sbjct: 243 NEYYGNTTFSIPFIAKYQVMNSMLALKTIEVMKNHISVSEDAVCRGVRETRWQGRMETVL 302

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQG--KRPIMGKIAL 407
                  + VD AH  + +E  ++          + ++F    D+D     R I+ KI+ 
Sbjct: 303 PG-----VIVDGAHNEDGVEKFVETAAHFQKEYPLTLLFSAVDDKDYTDMIRTILDKISF 357

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEM 455
                 IVT      + P +  AEI    G P      N   A + A+E 
Sbjct: 358 RH---VIVTQVGGYRKVPAEHLAEIFKEQGCPSAEACENVEMAFKKALEQ 404


>gi|218247349|ref|YP_002372720.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8801]
 gi|218167827|gb|ACK66564.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8801]
          Length = 494

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 131/419 (31%), Gaps = 55/419 (13%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A      PI    +    L               +AV GT GK++
Sbjct: 105 VICSTAIAKNNSEYQAAQEKGCPIFHRSDVLAAL---------ISDYQSIAVAGTHGKTT 155

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S V  +  ++GL                D  +     +   +  ++L S        +
Sbjct: 156 TSSLVGYVLLKAGL----------------DPTIIVGGEVDAWEGNAHLGSSKYLVAEAD 199

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++++ +           +            
Sbjct: 200 ESDGSLVKH-----SPTIGVVTNIELDHPDHYESLEQVVRTFQIFETQCEILVGCI---- 250

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
                 E ++   N          +     +K +          +   G+        +P
Sbjct: 251 ----DCETVRSQLNPTITYSLDPTKNADYTVKNLTYDAQGTIAEVWERGRFLGQMRLTIP 306

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  V NAL A  +   +G+D  ++ + L        RFE  G ++ G     DYAH  +
Sbjct: 307 GEHNVSNALAAVAVGRKLGLDFQVIADALATFGGAKRRFEHRGYSN-GITFIDDYAHHPS 365

Query: 368 SLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD----- 418
            ++  L   R       S R++ +F       +    +        A   ++  D     
Sbjct: 366 EIQATLSAARSKVDQNGSSRVVAIF-QPHRYSRTATFLADFAQAFQAADLVILSDIYSAG 424

Query: 419 --NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             N  +   + +   +       I +        +  ++L   D+ +  G G+    I+
Sbjct: 425 EVNIHNITGQDLANAVKVHHSQVIYEPCLKALTESLPQLLQPGDLALFLGAGNLN-QII 482


>gi|198242179|ref|YP_002218299.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197936695|gb|ACH74028.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326626105|gb|EGE32450.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 94/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV+GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVSGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|154488891|ref|ZP_02029740.1| hypothetical protein BIFADO_02200 [Bifidobacterium adolescentis
           L2-32]
 gi|154083028|gb|EDN82073.1| hypothetical protein BIFADO_02200 [Bifidobacterium adolescentis
           L2-32]
          Length = 521

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 60/201 (29%), Gaps = 17/201 (8%)

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               +     I  E +       +PG     NA  A      +G+D       +      
Sbjct: 301 HFTLHIPGGLIGEEERRIAVTLTVPGIHNARNASAAIIAAALLGMDVERASAAVTSFLGA 360

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFG-CGGDRDQGKRP 400
             RF+  GT S+   +  DYAH    +  +L    R     +I V+F      R +    
Sbjct: 361 ARRFQVRGTVSQ-VTVVDDYAHHPTEIAALLDAARRRYPQSKIRVIFQPHLFSRTRFFSS 419

Query: 401 IMGKIALDLADIAIVTDDNPRSED--------PEKIRAEIIH-----GIPGFIEKGNRIE 447
              +     AD  IVT   P  E         P  I  E +               +   
Sbjct: 420 EFAQALAK-ADDVIVTGIFPAREKQEDFPDVTPATIVDEALKLEHEPAKDWVRGVEDMHT 478

Query: 448 AIRTAIEMLNKQDVLVVAGKG 468
           A +  +   +  DV+   G G
Sbjct: 479 AAQMMVMRAHHGDVIFTVGAG 499


>gi|50084464|ref|YP_045974.1| cyanophycin synthetase [Acinetobacter sp. ADP1]
 gi|49530440|emb|CAG68152.1| Cyanophycin synthetase [Acinetobacter sp. ADP1]
          Length = 914

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLE----HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             V NA+ AAG+  A+G +   +              PGR      +  G R+ +DY H 
Sbjct: 691 HNVENAMFAAGMAYALGKNLDQIRIGLRTFDNTFFQSPGRMNV--FDKHGFRVILDYGHN 748

Query: 366 SNSLEMILKNI-RTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
             ++  + + + R    GR ++   C GD RD+    I  K+A    +     DD+ R  
Sbjct: 749 EAAVGAMTELVDRLNPRGRRLLGVTCPGDRRDEDVVAIAAKVAGHFDEYYCHRDDDLRGR 808

Query: 424 DPE---KIRAE--IIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLV 463
            P+   KI  +  I  G+P           +++   +      D+++
Sbjct: 809 APDETPKIMRDALIQLGVPESRIHIVEQEEDSLAAVLTEAQVDDLVL 855


>gi|257884456|ref|ZP_05664109.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257887239|ref|ZP_05666892.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257820294|gb|EEV47442.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257823293|gb|EEV50225.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 444

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 90/330 (27%), Gaps = 40/330 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AVTG+ GK+S    +  +      +S+ IG           +           +
Sbjct: 103 QNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-----DGTGHGDPQAEFFSFEACE 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              +  +    +  +                      TN+  DH DY+ +    F A   
Sbjct: 158 YRRHFLAYSPDYAIM----------------------TNIDFDHPDYYTSIDDVFTAFQT 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +  +   AI    D     + K   +       V                      
Sbjct: 196 ----MAGQVKKAIFAYGDDAY--LRKLEADVPIYYYGVTENDDIQARNIERTTSGSAFDV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +     F  P  G+  + NAL    +     +D   V E +     V  RF      
Sbjct: 250 YHGDEFVGHFTVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTFPGVKRRF--SEKI 307

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                +  DYAH    ++  +   R       II VF      R         + ALDLA
Sbjct: 308 VADMTVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 366

Query: 411 DIAIVTD--DNPRSEDPEKIRAEIIHGIPG 438
           D   + D   + R E       ++   I  
Sbjct: 367 DKVYLCDIFGSAREEQGNVKIEDLGAKIKK 396


>gi|227551623|ref|ZP_03981672.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium
           TX1330]
 gi|257895775|ref|ZP_05675428.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12]
 gi|293377610|ref|ZP_06623799.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1]
 gi|227179186|gb|EEI60158.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium
           TX1330]
 gi|257832340|gb|EEV58761.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com12]
 gi|292643610|gb|EFF61731.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecium PC4.1]
          Length = 444

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 90/330 (27%), Gaps = 40/330 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AVTG+ GK+S    +  +      +S+ IG           +           +
Sbjct: 103 QNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-----DGTGHGDPQAEFFSFEACE 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              +  +    +  +                      TN+  DH DY+ +    F A   
Sbjct: 158 YRRHFLAYSPDYAIM----------------------TNIDFDHPDYYTSIDDVFTAFQT 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +  +   AI    D     + K   +       V                      
Sbjct: 196 ----MAGQVKKAIFAYGDDAY--LRKLEADVPIYYYGVTENDDIQARNIERTTSGSAFDV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +     F  P  G+  + NAL    +     +D   V E +     V  RF      
Sbjct: 250 YHGDEFVGHFTVPAFGKHNILNALGVIAVAYFENLDLKEVAEEMLTFPGVKRRF--SEKI 307

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                +  DYAH    ++  +   R       II VF      R         + ALDLA
Sbjct: 308 VADMTVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 366

Query: 411 DIAIVTD--DNPRSEDPEKIRAEIIHGIPG 438
           D   + D   + R E       ++   I  
Sbjct: 367 DKVYLCDIFGSAREEQGNVKIEDLGAKIKK 396


>gi|161617695|ref|YP_001591660.1| hypothetical protein SPAB_05558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161367059|gb|ABX70827.1| hypothetical protein SPAB_05558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 459

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 93/359 (25%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 267 ----KVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILV 432


>gi|152978746|ref|YP_001344375.1| UDP-N-acetylmuramate [Actinobacillus succinogenes 130Z]
 gi|150840469|gb|ABR74440.1| UDP-N-acetylmuramate [Actinobacillus succinogenes 130Z]
          Length = 456

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 7/211 (3%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K     GC         +     +       Q        K  +  + + G+  ++NAL
Sbjct: 229 AKETLAMGCWSAQQFIGKEQEWYAERITNDCSQFAVFHHGEKITEVTWNIVGQHNMHNAL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A       GI      + L        R E  G   +G  +Y D+AH    ++  L  +
Sbjct: 289 MAIAAAHHAGIAIEDSAKALTTFVNAKRRLEVKG-EVKGITVYDDFAHHPTEIQATLTAL 347

Query: 377 RTITSG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           R    G  RI+ V     +  + G        AL  AD   +   +    +   I     
Sbjct: 348 RDKIGGGVRILAVLEPRSNTMKMGHHKDEIAPALVRADHVYLLQPDNIPWEVVDIAN--- 404

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + I       +  + +   +   N  D ++V
Sbjct: 405 NCIQPASCTADLDKLVDMIVAEANPSDHILV 435


>gi|224535472|ref|ZP_03676011.1| hypothetical protein BACCELL_00335 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522938|gb|EEF92043.1| hypothetical protein BACCELL_00335 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 407

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 92/363 (25%), Gaps = 10/363 (2%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSP 167
           +     + + V GT+GK S +  +  I Q +G           +    +        P  
Sbjct: 41  HPHRNFHSIHVGGTNGKGSCSHTLAAILQEAGYRVGLYTSPHLVDFRERIRINGQPIPEE 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +             H S    +  +         +            +D         
Sbjct: 101 YVVRFVEKERDFFEPLHPSFFELTTAMAFRYFADEHVDVAVIEVGLGGRLDCTNIVHPDL 160

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                +  +        +       +  +                       ++V A   
Sbjct: 161 CIITNISFDHTQFLGNTLEKIAGEKAGIIKSGIPVIIGETTPETKPVFSKKAREVGAPIL 220

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPG 344
             +     +    +       + +    L+ A   +      +    V      +  + G
Sbjct: 221 FAEEDEKDDYPGLECELKGLYQTKNTRTLLTAIPELRKAGYNLSEQAVRSGFAHVCELTG 280

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMG 403
                        +  D  H    +  I + ++  +  ++ ++ G   D+D  G   ++ 
Sbjct: 281 LMGRWQKLQDAPTLICDTGHNVGGITYITEQLKQQSYRKLHMIIGMVNDKDIHGVLALLP 340

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           + A      A V    P SE  +      + GI       +   A+R A E    +D + 
Sbjct: 341 QEAEYYFTKASVRRALPESELAQLASEAGLQGI----CYPDVPSAVRAAQEKSLPEDFIF 396

Query: 464 VAG 466
           V G
Sbjct: 397 VGG 399


>gi|148652337|ref|YP_001279430.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp. PRwf-1]
 gi|189029024|sp|A5WCT9|MURC_PSYWF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148571421|gb|ABQ93480.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp. PRwf-1]
          Length = 476

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 122/377 (32%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + IA  A+ +VVSSA   ++          + VV   R+   L       +G  
Sbjct: 70  GHD--SKNIAN-ADVVVVSSAIDRENPEIQAALKAQLPVV---RRADMLGELMRYRHG-- 121

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV G  GK++  S +  +   +G     +     +++  ++  L      YL   
Sbjct: 122 ----IAVAGAHGKTTTTSLLTMMMTEAGFDPTYV-IGGKLNASGKNASLG--ESRYLIAE 174

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                +  +T   + A                    TN+ +DH+D +        A    
Sbjct: 175 ADESDASFLTLHPMAA------------------IVTNIDQDHMDTYGNSFDKLKAAYIQ 216

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F + +P    A++  DD    +++              +        +V          +
Sbjct: 217 FLQNMPFYGLAVVCGDDKELFDMIDDIGRPVLTFGLEPHNNVQATNVRVDGTKTHFT-VL 275

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             + +  +    +PG+  V NAL A  +    G++   +   L K   V  RFE     +
Sbjct: 276 RKDREPLELTLNIPGQHNVLNALAAITMATDEGVNDDAIKRALAKFAGVGRRFEQQACVA 335

Query: 354 RGGRI---YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
           +         DY H    +   +K  R     R +V+        + +        +   
Sbjct: 336 KDDGDVLLIDDYGHHPVEVAATIKAARASYPERRLVMLFQPHRYSRTRDCYDDFVAVLSQ 395

Query: 409 LADIAIVTDDNPRSEDP 425
             D+ ++ D     E P
Sbjct: 396 -VDVLLLLDVYSAGEAP 411


>gi|25028837|ref|NP_738891.1| putative folylpolyglutamate synthase [Corynebacterium efficiens
           YS-314]
 gi|259507899|ref|ZP_05750799.1| tetrahydrofolate synthase [Corynebacterium efficiens YS-314]
 gi|23494123|dbj|BAC19091.1| putative folylpolyglutamate synthase [Corynebacterium efficiens
           YS-314]
 gi|259164533|gb|EEW49087.1| tetrahydrofolate synthase [Corynebacterium efficiens YS-314]
          Length = 506

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + +      +++D AH  +    +   + R     R+I V G  GD+D   R I
Sbjct: 363 PGRLERLRSAPT---VFIDAAHNPHGAAALGAALDRDFDFRRLIGVIGVLGDKDA--RGI 417

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK 458
           +G +        + T   + R+ D  ++        G            A+  AIE+   
Sbjct: 418 LGSL-EPYLHEVVCTQTTSERALDAYELAEYAREIYGDERVHVADTLPGAVELAIELAED 476

Query: 459 QDV-----LVVAG 466
            DV     +V+ G
Sbjct: 477 TDVQSGSGVVITG 489


>gi|293556209|ref|ZP_06674799.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039]
 gi|294615651|ref|ZP_06695506.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636]
 gi|291591480|gb|EFF23134.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1636]
 gi|291601628|gb|EFF31890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E1039]
          Length = 444

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 90/330 (27%), Gaps = 40/330 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AVTG+ GK+S    +  +      +S+ IG           +           +
Sbjct: 103 QNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-----DGTGHGDPQAEFFSFEACE 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              +  +    +  +                      TN+  DH DY+ +    F A   
Sbjct: 158 YRRHFLAYSPDYAIM----------------------TNIDFDHPDYYTSIDDVFTAFQT 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +  +   AI    D     + K   +       V                      
Sbjct: 196 ----MAGQVKKAIFAYGDDAY--LRKLEADVPIYYYGVTENDDIQARNIERTTSGSAFDV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +     F  P  G+  + NAL    +     +D   V E +     V  RF      
Sbjct: 250 YHGDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVKRRF--SEKI 307

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                +  DYAH    ++  +   R       II VF      R         + ALDLA
Sbjct: 308 VADMTVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 366

Query: 411 DIAIVTD--DNPRSEDPEKIRAEIIHGIPG 438
           D   + D   + R E       ++   I  
Sbjct: 367 DKVYLCDIFGSAREEQGNVKIEDLGAKIKK 396


>gi|260775365|ref|ZP_05884262.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608546|gb|EEX34711.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 486

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 149/471 (31%), Gaps = 65/471 (13%)

Query: 14  LINQLSIFPMQWRERKINEVSSDSRHIQAG-WIFVAIVGNKEDGHLFIPQAIAQGAEAIV 72
           L     I      E  + +     R  + G  IF+        GH      + Q A  +V
Sbjct: 43  LNEGYQITGSDLAENPVTD-----RLAKKGATIFI--------GH--AESNVHQ-ASVVV 86

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVA 130
           VS+A + ++          + VV   R+   L+      +G      +AV GT GK++  
Sbjct: 87  VSTAINEENPEIKAARAARVPVV---RRAEMLAELMRFRHG------IAVAGTHGKTTTT 137

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V QI   + L    +     + S   + RL +   +      S  S            
Sbjct: 138 ALVTQIYSEAELDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH--------- 187

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                      ++ +    TN+  DH+D +             F   LP    AI+  DD
Sbjct: 188 -----------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDD 236

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGE 309
              +E++ R                   ++  C    + + T+  +G+ + D    +PG 
Sbjct: 237 PVVRELIPRISRQVITYGFAEDADV--RIENYCQEGQQGKFTVVRQGRANLDITLNIPGR 294

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTS 366
               NA  A  +     ID   +L  +        RFE +G    G     +  DY H  
Sbjct: 295 HNALNAAAAIAVATEDDIDDESILRAMAGTQGTGRRFEHLGEFDTGNGSAMLVDDYGHHP 354

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSED 424
             +++ +   R     + +V+        + +        +     D+ ++ D     E 
Sbjct: 355 TEVDVTIHAARNGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLLMLDVYSAGEK 413

Query: 425 P------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           P        +   I   G    I   +          +L   D+++  G G
Sbjct: 414 PIAGADGRALCRTIRSRGKIDPIFVSDSTTLPSVLANVLQDGDLVLTQGAG 464


>gi|68248734|ref|YP_247846.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae 86-028NP]
 gi|68056933|gb|AAX87186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae 86-028NP]
          Length = 452

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 76/266 (28%), Gaps = 11/266 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G    G  +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNGITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG-RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
            G RI+ V     +  + G        AL  AD   +      S +   I  +    +  
Sbjct: 350 GGVRILAVLEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQ---CVQP 406

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                N    +   +      D ++V
Sbjct: 407 AYWNANLDRLVDMIVAEAQPTDHILV 432


>gi|331083028|ref|ZP_08332147.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330399765|gb|EGG79426.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 457

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 97/299 (32%), Gaps = 20/299 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      + LS    ++   E SS  L+            +  N+  DH++ H T + Y 
Sbjct: 147 IGNPYTDAALSMTEDSYTVAEISSFQLETIDTFA--PKVSAILNITEDHLNRHHTMEEYI 204

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K  +      ++   + Y +D   +   +R         S    GK   L        
Sbjct: 205 RVKELITANQTKEDYCILNY-EDEVLRAFGERCPAKTVFFSSERKLGKGAFLDGDAICLK 263

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               T+ +          + G+    N + A+ +    G+   ++ + + +   V  R E
Sbjct: 264 TDTETLEI---VKTGELKILGKHNYENVMAASAMAYYTGVPVEVIHKAITEFRAVAHRIE 320

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           FV   +             ++    ++        R  ++ G G D++      +     
Sbjct: 321 FVDEINGIAYYNDSKGTNPDAAIKGIQA-----MNRPTLLIGGGYDKESSYEEWIQSFDG 375

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++       +  EKI  E+ H  G    I   N  EA+    +   K D +++
Sbjct: 376 KVKYLVLI------GQTREKI-QEVAHKCGFVNTILADNLEEAVSICTQKAEKGDAVLL 427


>gi|319957189|ref|YP_004168452.1| mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419593|gb|ADV46703.1| Mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 472

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 119/368 (32%), Gaps = 46/368 (12%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+ +     RL       ++ VT + GK+S+ +F+  +  +   +       +T+    +
Sbjct: 143 RRAM----KRLKSLPDLKVVGVTASYGKTSIKNFIATLLAQRYRTYATPRSVNTLGGVMK 198

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D     P    +              V + A   G        ++        +G  HI+
Sbjct: 199 DVNEELPEEAEV------------YVVEMGARGEGDIAEITRFVQPHYAVVGKIGPAHIE 246

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y +T +   N KM + +     E+     A    ++ +                    I 
Sbjct: 247 YFKTLERIRNTKMEILQSPRLIEAWVHESARIKPTEMI-------------------HIF 287

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
             ++  +    + T      +      + G F   N   A  +  A+G+    +   LEK
Sbjct: 288 GPEIEEVEATLEGTCFTLEGERYC-AKILGAFNAVNLAAAIHVARALGLTPDEIRAGLEK 346

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           +  VP R + +        +   +    + +      +     GR +++     + D+  
Sbjct: 347 IEPVPHRLQRIDAGG-KVILDDSFNGNIDGMMASFD-LAATWPGRKVLITPGLVEADEAL 404

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLN 457
              + + A ++ D  IVT D         I  EI+   P  +    R   +    +E   
Sbjct: 405 NRQVAERAEEIFDRIIVTGDLNY-----AIFKEIVS--PEKLRHLERKSEMEQMLVEETR 457

Query: 458 KQDVLVVA 465
             D+++ A
Sbjct: 458 PGDLILFA 465


>gi|312881956|ref|ZP_07741713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370392|gb|EFP97887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 450

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 116/361 (32%), Gaps = 39/361 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK++ AS +  I ++ G    F +G        +     +    +   
Sbjct: 101 QDRWVLAVSGTHGKTTTASMLTWILEKCGYEPGFLVGGVLGNFGVSARLGKSVFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPKTLIMNNLEFDHADIFDDLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P++         + +K   + GC   S           +       Q  
Sbjct: 202 -RQFHHLVRTVPSVGRILFPQQDQEIKDVLSRGCWSESESSGIGGDWQAEKQHADGSQFA 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K     + L G   + NAL+A      +G++     E L+       R E  G 
Sbjct: 261 VFFEGKKVASVNWNLIGNHNINNALMAIAAARHVGVEPLHACEALDTFINTKRRLELKGM 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGC---GGDRDQGKRPIMGKIAL 407
              G  +Y D+AH   ++E+ L+++R   SG RII V         R   K  +    +L
Sbjct: 321 -VNGVEVYDDFAHHPTAIELTLESLRNKASGKRIIAVLEPRSATMKRGVHKNSL--ARSL 377

Query: 408 DLADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLV 463
           D AD   +         P+ I     ++     G     + IE +  A+   +   D + 
Sbjct: 378 DEADAVFLYQ-------PDNINWSLEDVASQCRGEAAVSDNIEELVAAVTTFVQSGDRIC 430

Query: 464 V 464
           V
Sbjct: 431 V 431


>gi|238503760|ref|XP_002383112.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Aspergillus
           flavus NRRL3357]
 gi|220690583|gb|EED46932.1| UDP-N-acetylmuramate--L-alanine ligase, putative [Aspergillus
           flavus NRRL3357]
          Length = 497

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 135/420 (32%), Gaps = 55/420 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRS----NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           A+ +V S+A +    +  + +      P++     R  +   AS +        +A++G+
Sbjct: 85  AKLVVASTAATKNKTNVEVDAARDRRIPVIH----RSEM--LASLMRHH---KSIAISGS 135

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GKS+  S V  + +  GL                    TT S   + +  S        
Sbjct: 136 HGKSTTTSMVAGMLEAGGL------------------SPTTISGAVVTQYGSNAHMGSGH 177

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            + VEA        RL  +       TN+  DHI ++ TQ+    A    F   +P    
Sbjct: 178 WMVVEADESDGTMVRLPALI---SVVTNIDSDHITFYGTQEKTR-ATFAQFVRNVPFYGL 233

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   ++++    +       V         + V          +SV  +     
Sbjct: 234 AVLCIDDPGVRKILPEVQDRNIVTYGVSEDADV-RAENVKYNPQDSTFVLSVRDRRDGTR 292

Query: 304 F-------PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    + G   + NAL    + + +GI+   +   L        R+      + G 
Sbjct: 293 RVVGSIVLSVLGLHNLQNALATTAIALELGIELESIRYALGSFQGTNRRY-IHVGEANGI 351

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG-GDRDQGKRPIMGKIALDLADIAIV 415
           +I  D+      ++      +   + R+I V+      R+          A + +   I+
Sbjct: 352 QIIDDFGTHPAEIKATQTMAKQAGARRVIAVYQPTVVVRNVEAWLEEYPAAFEESAHIII 411

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI---------RTAIEMLNKQDVLVVAG 466
              +    DP     E    +  ++    R +AI              +  + D +V  G
Sbjct: 412 GQADGVEVDPVP-AGEARETLVQYLHSHGREDAISMPDPSALPELVSRLGQEGDFVVCMG 470


>gi|168789615|ref|ZP_02814622.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
 gi|261226845|ref|ZP_05941126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255249|ref|ZP_05947782.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189370788|gb|EDU89204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
          Length = 438

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 133/403 (33%), Gaps = 64/403 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E           
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKFS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA---DIAIVTDDNPR 421
           S E  L  +     G + ++ G  G   D     R + G          D   +      
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGVQL------ 377

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +R E+        +     +A+R     +   D++++
Sbjct: 378 ----AALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|298207883|ref|YP_003716062.1| UDP-N-acetylmuramate--L-alanine ligase [Croceibacter atlanticus
           HTCC2559]
 gi|83850524|gb|EAP88392.1| UDP-N-acetylmuramate--L-alanine ligase [Croceibacter atlanticus
           HTCC2559]
          Length = 451

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 14/172 (8%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F F LPG+  + NA+ A  L       S  + + L     V  RF      S    I  D
Sbjct: 267 FEFNLPGKHNLQNAVTALALAAPFVSPSNSLTKALASFKGVQRRF-TYRIKSEKLTIIDD 325

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDN 419
           YAH  + +  + + +R +   + ++         +  R  + + A  L+  D  ++ D  
Sbjct: 326 YAHHPSEINAVNQAVREMHPNKKVLAVFQPHLFSRT-RDFINEFAESLSKFDSVVLLDIY 384

Query: 420 PRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRT----AIEMLNKQDV 461
           P  E+P      + +   I +     I K + I+ ++      + M+   D+
Sbjct: 385 PAREEPIDGITSQALLKLIANPNKKIIGKVDLIKEVKATSAEVVAMMGAGDI 436


>gi|254230042|ref|ZP_04923441.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|262392462|ref|YP_003284316.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|151937430|gb|EDN56289.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|262336056|gb|ACY49851.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
          Length = 452

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 113/356 (31%), Gaps = 29/356 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V++R      +              K+    +K +V
Sbjct: 205 HHLVRTVPGNGLILAPKQDQALADVLERGCWTEKQF---SGVEGDWQAHKLVVDGSKFEV 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E K     + L G+  V NAL+A      +G+   L  + L +      R E  G 
Sbjct: 262 ALQGE-KVGTVEWDLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
             +G  +Y D+AH   ++E+ +  +R     + I+           +      +A  L  
Sbjct: 320 EVQGVTVYDDFAHHPTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSLHS 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +    + E    +I            +    +   +E     D ++V
Sbjct: 380 ADEVFLFQPD----NIEWSVQDITEQCQQPAFVDADIDNFVAKIVERAQPGDQILV 431


>gi|332518984|ref|ZP_08395451.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044832|gb|EGI81025.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
          Length = 445

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 116/363 (31%), Gaps = 42/363 (11%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FAS+        I+ +TG++GK++ AS    I  +  L+    G               
Sbjct: 96  EFASKYTK---ATIVGITGSNGKTTTASLTHHILSQE-LNVGLAGNIGDS---------- 141

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                        +  +   +  +E SS  LD   +   K      TN+  DH+D +  +
Sbjct: 142 ---------FAKQILEKNYKNYVLEISSFQLD--GIIDFKPNIAIITNITPDHLDRYDYK 190

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC--RVLSVGYQGKFIHLKK 281
              +            KE   I  ADD      +K                     +L+ 
Sbjct: 191 FENYINSKFRIALNQTKEDYLIYDADDEVITNWLKTNTIQSTLLPFSLTKKIENGAYLEN 250

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                      I +  K+            V NA+ A+ +   + I    + E LE  H 
Sbjct: 251 ENIKITIDNKHIIMPTKNLALEGKH----NVKNAMAASTVSHLLKIRKQTIRESLENFHG 306

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E V   ++   I    A     +      + ++ +  + +V G   D+      +
Sbjct: 307 VEHRLEQVLKINKVQYINDSKATN---VNATYYALESMDAPTVWIVGGT--DKGNDYTEL 361

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              I   +  I  +  DN      EK+     + +   +E     EA++ A ++    D 
Sbjct: 362 FPFINEKVKAIICLGIDN------EKLLENFGNMVDVIVETQFMSEAVKIAYKIAEAGDN 415

Query: 462 LVV 464
           +++
Sbjct: 416 VLL 418


>gi|331090022|ref|ZP_08338912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330402936|gb|EGG82502.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 447

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 90/278 (32%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T +AY  AK R+ E     +   + Y
Sbjct: 161 EISSFQLET--IHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNY 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   K   ++         S     K I+L     I          +  +      + 
Sbjct: 219 EDDELQK-FGEKTAAQVLYFSSARKLEKGIYLDGTKIICAADVPVELCDVSEL----KIL 273

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A+ +  A G+   ++ ++L     V  R EFV                 +
Sbjct: 274 GTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKRGVLYYNDSKGTNPD 333

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R  ++ G G D+D      +      +  + ++          EK
Sbjct: 334 AAIKGIQA-----MNRPTILIGGGYDKDSEYDEWIKAFDGKVRKLVLL------GATREK 382

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      +G    I      EA    ++     D +++
Sbjct: 383 IAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLL 420


>gi|295397238|ref|ZP_06807336.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
 gi|294974519|gb|EFG50248.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
          Length = 447

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 67/219 (30%), Gaps = 8/219 (3%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                   FTN+  DH DY++     F A           +   I Y  DAY ++   ++
Sbjct: 163 AYHPDYAIFTNIDFDHPDYYENIDQVFAAN---TTFAHQVKKKVIAYGGDAYLRQFADQS 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                     G     +      A          +      F  P  GE  V NAL   G
Sbjct: 220 DIDVWYYGLEGGDNHIVASNVDLATDGSHFDVHVMGEFYGHFDIPTFGEHNVMNALSVIG 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
            C      +  V E L     V  RF           +  DYAH  + ++  +   R   
Sbjct: 280 FCYLENFPADRVAEELRTFGGVKRRFSEKKIG--DMTLIDDYAHHPSEIKATINAARQKY 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD 417
             + IV         +    +M + A   DL+D   + +
Sbjct: 338 PNKKIVSVFQPHTFSRTI-ALMDEFAGALDLSDDVYLCE 375


>gi|255349155|ref|ZP_05381162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 70]
 gi|255503692|ref|ZP_05382082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 70s]
 gi|255507372|ref|ZP_05383011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis D(s)2923]
 gi|289525802|emb|CBJ15283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis Sweden2]
 gi|296435380|gb|ADH17558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis E/150]
 gi|296439097|gb|ADH21250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis E/11023]
          Length = 416

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 62/215 (28%), Gaps = 16/215 (7%)

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF--PLPGEF 310
                     A   +         + +       +     +    +  D           
Sbjct: 184 YHGNFSEYFQAKQNLALCMRNPDDLWVGDERFYGHLYLEEVQKYMRLLDKESALKPLYLH 243

Query: 311 QVYNALVAAGLCI-AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             YN   A  L      I     +E +   +  P R E++G       I    A T ++ 
Sbjct: 244 DKYNYCCAYLLAKTEFPISETSFIEAVATFNKPPHRMEYLGQKQGIHYINDSKATTVSAT 303

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L     +  G   +V   G ++      ++   AL  A  ++V       E  ++I 
Sbjct: 304 ETAL-----LGVGNQAIVILGGRNKGCTFSSLLP--ALRKAAKSVVAM----GECAQEIA 352

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++           N  EA+  A E     DV+V+
Sbjct: 353 RDLEEF--PVTVVKNLSEALLCAEEQAVPGDVIVL 385


>gi|257068262|ref|YP_003154517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium
           faecium DSM 4810]
 gi|256559080|gb|ACU84927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachybacterium
           faecium DSM 4810]
          Length = 503

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/376 (16%), Positives = 115/376 (30%), Gaps = 38/376 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R+        LAVTGT+GK++  + ++ I  R+GL +   G               
Sbjct: 121 ELARRMQAADGPAWLAVTGTNGKTTTVTMLESILLRAGLRAVACGNVG------------ 168

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 L    + L   G   +++E SS  L       +   A +  N+  DH+D+H   
Sbjct: 169 ------LPVIEAALDPAGFDVLALELSSFQLHW--TQHLDCEAAAVLNVSDDHLDWHGGA 220

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  AK R++E +            D  +  +++ A                   +   
Sbjct: 221 EAYAAAKGRIYEGVRTACIY---NVADPTTLRLVEEADVREGARAIGIGLSTPGLSELGV 277

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA---AGLCIAIGIDSALVLEHLEKLH 340
                       E +          +        A     +        A          
Sbjct: 278 IDGILADRAFLAERRTSAAELATLEDLAPLGPQGAGPHVVIDALAAAALARAHGVEPWAV 337

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGD-RDQGK 398
               R   +G++       +D     +  +         +      VV+  GGD +    
Sbjct: 338 RDGLRAYRMGSHRAQHLATIDGIGYVDDTKATNPAAAAASLRAAERVVWIAGGDAKGADL 397

Query: 399 RPIMGKIALDLADIAIVTDDN-------PRSEDPEKIRAEIIHGIPGFIEKGNR--IEAI 449
            P++      L  + ++  D+        R   PE     I  G    +   +R   +A+
Sbjct: 398 GPLIAAAHDRLVGVVLLGRDDAPFTAALSRH-APEVPVRRIDPGDTDGVAGRSRLMEDAV 456

Query: 450 RTAIEMLNKQDVLVVA 465
           + A  +    DV+++A
Sbjct: 457 QAARALAEAGDVVLLA 472


>gi|229545504|ref|ZP_04434229.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1322]
 gi|307268256|ref|ZP_07549640.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248]
 gi|307275646|ref|ZP_07556787.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134]
 gi|307280524|ref|ZP_07561573.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860]
 gi|307295969|ref|ZP_07575801.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411]
 gi|229309420|gb|EEN75407.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1322]
 gi|306496300|gb|EFM65879.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0411]
 gi|306504072|gb|EFM73288.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0860]
 gi|306507751|gb|EFM76880.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2134]
 gi|306515416|gb|EFM83947.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4248]
 gi|315025920|gb|EFT37852.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2137]
 gi|315028958|gb|EFT40890.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4000]
 gi|315033232|gb|EFT45164.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0017]
 gi|315143492|gb|EFT87508.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX2141]
 gi|315147575|gb|EFT91591.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX4244]
          Length = 456

 Score = 48.4 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 87/306 (28%), Gaps = 38/306 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG                P   + A  
Sbjct: 116 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFE 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   + +                         TN+  DH DY+++ +  F+A  + 
Sbjct: 167 ACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQT 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K   A         K + +           V  +                    
Sbjct: 208 MAHQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVY 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F+ P  G   + NAL    +     +D   V E +     V  RF     + 
Sbjct: 263 HKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS- 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
               I  DYAH    ++  +   R       II VF      R         + ALDLAD
Sbjct: 322 -DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLAD 379

Query: 412 IAIVTD 417
              + +
Sbjct: 380 EVFLCN 385


>gi|323935140|gb|EGB31507.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1520]
          Length = 438

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    ++                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLEDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLASLRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|257454702|ref|ZP_05619958.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
 gi|257448012|gb|EEV22999.1| UDP-N-acetylmuramate--alanine ligase [Enhydrobacter aerosaccus
           SK60]
          Length = 504

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 138/421 (32%), Gaps = 52/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVSSA    +       +  I VV   R+   L       +G      +AV G  G
Sbjct: 99  ADVVVVSSAIDHTNPEIQAALSGRIPVV---RRADMLGELMRYRHG------IAVAGAHG 149

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  I   +GL    +     +++  ++  L                       
Sbjct: 150 KTTTTSLLTMILTEAGLDPTYV-IGGKLNASGKNASLG------------QSRYLVAEAD 196

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             +AS   L        + +A   TN+ +DH++ +        A    F + +P    A+
Sbjct: 197 ESDASFLSL--------RPMAAIVTNIDQDHMETYGGSFDKLKAAYVQFLQNMPFYGLAV 248

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD     ++ +          +        +  V          +  + +       
Sbjct: 249 LCGDDKELYGLIDKIARPVL-TYGLEKHNDVQAIDVVADGTKTHFTVLRKDREPLPITLN 307

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-----YV 360
           +PG   VYNAL A  +    G+    + + ++K   V  RFE  G               
Sbjct: 308 IPGIHNVYNALAAITISTDEGVSDEAICQAVKKFAGVGRRFENNGNYPVKDGAGDVLLID 367

Query: 361 DYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD 418
           DY H    + M +K  R      R++++F      R +        +     D+ ++ D 
Sbjct: 368 DYGHHPTEVAMTIKAARQSYPDRRLVMIFQPHRFTRTRDCFDDFVDVLSQ-VDVLMLLDV 426

Query: 419 NPRSE------DPEKIRAEII---HGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG 468
               E      D   +   I       P  +   +  + IR  +  ML   D+L+  G G
Sbjct: 427 YSAGEAVIEGADSRSLARTIRTRGQVEPIMLNINDMDQ-IRQVLGSMLKGNDLLITQGAG 485

Query: 469 H 469
           +
Sbjct: 486 N 486


>gi|302533953|ref|ZP_07286295.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
 gi|302442848|gb|EFL14664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
          Length = 476

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 137/408 (33%), Gaps = 51/408 (12%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S  +          +   + VV +        A +L G+     LA+TGT+GK++ 
Sbjct: 73  LVVTSPGWKPDSPLFLAAAEAGVDVVGDV-----EIAWQLRGEGAAPWLAITGTNGKTTT 127

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  I + +GL +  +G   T           T               +    ++VE 
Sbjct: 128 TQMLASILRAAGLKTAAVGNIGTPIIDVV-----TGD-------------EQYDVLAVEL 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ L       ++  + +  NL  DH+D+H + +AY  A  +         +     AD
Sbjct: 170 SSYQLHW--APSVRAHSAAVLNLAPDHLDWHGSMEAY--AADKGRIYEGNTIACVYNVAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFLF 304
            A  + V +     GCR +          +  V       +  ++   K+          
Sbjct: 226 PATERLVEEADVEEGCRAIGFTLGAPGPSMLGVVDGILVDRAFVANRQKNAQELAHVDDV 285

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AA L  A G++   V + L        R  FV        +    A 
Sbjct: 286 NPPAPHNIANALAAAALARAFGVEPRAVRDGLRDFRPDAHRVAFVDEVDGVRYVDDSKAT 345

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L           +V    G  +      ++ K A  L  + ++        D
Sbjct: 346 NTHAAEASLAAFEP------VVWIAGGLAKGATFDELVQKSAKRLRGVVLM------GAD 393

Query: 425 PEKIRAEIIHGIPGF----IEKGN---RIEAIRTAIEMLNKQDVLVVA 465
              I   +    P      +E+ +    + A+R A  +    D +++A
Sbjct: 394 RALIAEALARHAPEVPVTDLERTDTGAMLAAVREAARLAEPGDTVLLA 441


>gi|73541988|ref|YP_296508.1| folylpolyglutamate synthetase [Ralstonia eutropha JMP134]
 gi|72119401|gb|AAZ61664.1| Folylpolyglutamate synthetase [Ralstonia eutropha JMP134]
          Length = 436

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/391 (14%), Positives = 116/391 (29%), Gaps = 46/391 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP------ 165
           +    +  V GT+GK S  + +++I   +G           ++   +             
Sbjct: 39  RIDAVVFTVGGTNGKGSTCAMLERIMLEAGYKVGCHTSPHLVTFNERARLNGEMATDAQL 98

Query: 166 ---------------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAG 207
                           PI L        +      +    +  L+     RLD + +I  
Sbjct: 99  LPHFEAVERARTSFADPISLTYFEFTTLAIIHMFAAAGLDAMILEVGLGGRLDAVNVIDT 158

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               +    ID+          K+   +  + +     I  D    + ++  A   G  +
Sbjct: 159 DCAVITSVDIDH-TQYLGDTREKIGFEKAGIFRPGVPAICGDPVPPQSLIDHAEAIGADL 217

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
             VG   +    K                            +    +A +AA   +   +
Sbjct: 218 WLVGRDFRHQAAKGQERQQWDWSGRERKLNGLGYPALRGANQLLNASAALAALQAMRAQL 277

Query: 328 DS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-I 385
              A  + +      +PGRF+ +        + +D AH  ++   + +N+  +   R   
Sbjct: 278 PVSAQEVRNGLAFVELPGRFQVLPGRPA---VILDVAHNPHAAATLGQNLENMGFFRYTY 334

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDNP--RSEDPEKIRAEIIHGI----- 436
            VFG   D+D      +  +   +AD        D P  R+     +  ++  G      
Sbjct: 335 AVFGAMQDKD------LAGVLRQVADKVDHWCLCDLPTERAATAADLLQKLEEGGFQPGP 388

Query: 437 -PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   +   A R AIE   + D ++V G
Sbjct: 389 DATAACFSSPEAAYRDAIERATENDRILVFG 419


>gi|307272893|ref|ZP_07554140.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855]
 gi|306510507|gb|EFM79530.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX0855]
          Length = 456

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 87/306 (28%), Gaps = 38/306 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG                P   + A  
Sbjct: 116 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFE 166

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   + +                         TN+  DH DY+++ +  F+A  + 
Sbjct: 167 ACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQT 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K   A         K + +           V  +                    
Sbjct: 208 MAHQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVY 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F+ P  G   + NAL    +     +D   V E +     V  RF     + 
Sbjct: 263 HKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS- 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
               I  DYAH    ++  +   R       II VF      R         + ALDLAD
Sbjct: 322 -DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLAD 379

Query: 412 IAIVTD 417
              + +
Sbjct: 380 EVFLCN 385


>gi|294637210|ref|ZP_06715516.1| FolC protein [Edwardsiella tarda ATCC 23685]
 gi|291089599|gb|EFE22160.1| FolC protein [Edwardsiella tarda ATCC 23685]
          Length = 423

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
               +    +   +PGRF+ VG   R   + +D AH  ++   + + ++ +    R+ +V
Sbjct: 273 DEAAIRQGLRHAALPGRFQQVGDAPR---LILDVAHNPHAAAYLAQRLQALPRPKRLRMV 329

Query: 388 FGCGGDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            G   D+D       G +A    L D         PR      + A +  G        +
Sbjct: 330 IGMLSDKDIA-----GTLACLTPLVDEWYCAPLSGPRGAPASALTAHLPAG---ARIFAD 381

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             +A R A++  + +D +VV G
Sbjct: 382 VEQAWRQAMDEADAEDTVVVCG 403


>gi|217964242|ref|YP_002349920.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290893199|ref|ZP_06556186.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|254766008|sp|B8DHD7|MURC_LISMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217333512|gb|ACK39306.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290557181|gb|EFD90708.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|307571190|emb|CAR84369.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes L99]
          Length = 447

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/429 (16%), Positives = 135/429 (31%), Gaps = 60/429 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +   +   +        +   +   +  +   T+  + 
Sbjct: 115 TTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEY-----FALEACEYQRHFLAYKPTYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 169 ---------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K + +        G + +F     +      +            F  P  G
Sbjct: 204 GDDAE--LRKLSLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V + L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVEDVKKELKTFEGVKRRFSIT--EKANQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD--DNPRSEDP 425
           +   +   R     + +V         + +  + G   +L+LAD   + D   + R +  
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTG 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETVHIVTNGEKKMS 483
               A++ H   G               E+L   + V++  G G  +             
Sbjct: 380 NLTIADLAHKTKGNHIIKE-----EHTEELLKYPEAVILFMGAGDVQKFQAAYEKVL--- 431

Query: 484 VDCDIIREI 492
            D +++ E 
Sbjct: 432 -DHEVLTEA 439


>gi|84494265|ref|ZP_00993384.1| putative folylpolyglutamate synthase [Janibacter sp. HTCC2649]
 gi|84383758|gb|EAP99638.1| putative folylpolyglutamate synthase [Janibacter sp. HTCC2649]
          Length = 466

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V  +     + VD AH       +   ++   T  +++ V     D+D      
Sbjct: 325 PGRLEVVRRSPT---VLVDAAHNPAGATALRDGLQEAFTFTKLVGVVAILKDKDAS---E 378

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI---PGFIEKGNRIEAIRTAIEMLN 457
           M +I   + D  I+T   + R+  P     EI  GI         G+  +A+  A  + +
Sbjct: 379 MLEILEPVLDEVIITRTTSARAMRPND-LGEIAKGIFGEARVTVVGDLPDALDRAAGIAD 437

Query: 458 K---QDVLVVAG 466
           +      ++  G
Sbjct: 438 ESGVGGGVLATG 449


>gi|145640000|ref|ZP_01795598.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittII]
 gi|145270887|gb|EDK10806.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittII]
          Length = 453

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 76/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G    G  +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNGITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|310642989|ref|YP_003947747.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Paenibacillus
           polymyxa SC2]
 gi|309247939|gb|ADO57506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa SC2]
          Length = 473

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 129/414 (31%), Gaps = 55/414 (13%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +V +                 I VV          A  L       I+ +TG++GK
Sbjct: 72  GVKLVVKNPGIPYTAPPVQKAVELGIEVVTEV-----EVAYHLCKAP---IIGITGSNGK 123

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  ++V ++ + SG++    G   T                      + + ++    + 
Sbjct: 124 TTTTTWVGKLLEASGMNPIVAGNIGTPLCE------------------AAVDAKSDEWMV 165

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS  L        K       N+   H+DYH   + Y  +K RLF      ++  + 
Sbjct: 166 VELSSFQLK--GTKDFKPAVACLLNVAETHLDYHGGMEDYVASKARLFANQTASDTAVVN 223

Query: 247 YADDAY----SKEVMKRAHNAGCRVLSVGYQGKFIHLKK----VCAIHNKQQVTISVEGK 298
           + D            K    +    L  G      ++      +      +     +   
Sbjct: 224 WDDSVCRELVPYIQAKLLPFSMTERLQEGLFADPPYIPDVTDDIERNIVYRDGNGVLHPI 283

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                  LPG F V NAL A  + IA G + A + E L     V  R E+V  +      
Sbjct: 284 IGVTDIGLPGRFNVENALAACAIAIAAGAEPAKLAEPLGSFRGVEHRLEYVLEHGGVAYY 343

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD 418
               A  S +  M L + +       IV+   G DR       +     +     ++   
Sbjct: 344 NNSKATNSKATMMALSSFKQ-----PIVLIAGGLDRGSDY-AELVPSLQEGVKAVVL--- 394

Query: 419 NPRSEDPEKIRAEII-HGIPGFIEKGNRI-------EAIRTAIEMLNKQDVLVV 464
               E   K+       GI       N         EA+  A +     DV+++
Sbjct: 395 --LGETRHKLADRARQAGIEHVKVVDNGEDAAATLVEAVNKAAQFAETGDVVLL 446


>gi|295695331|ref|YP_003588569.1| FolC bifunctional protein [Bacillus tusciae DSM 2912]
 gi|295410933|gb|ADG05425.1| FolC bifunctional protein [Bacillus tusciae DSM 2912]
          Length = 446

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E VG +     I +D AH  +    + + +  I  G   +V G   D+D      
Sbjct: 307 WPGRLEVVGLSPL---ILLDGAHNPDGARRLAEALCEIRPGPWGLVVGVLADKDVDG--- 360

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRT 451
           +     D+A   I T  D+PR+ DP+ +   +   G+       N ++A+ T
Sbjct: 361 ILSALKDVAGWMIATAPDSPRAMDPDSLARRMRRVGVEVAAVCPNPLDALET 412


>gi|257898345|ref|ZP_05677998.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15]
 gi|293571806|ref|ZP_06682822.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980]
 gi|257836257|gb|EEV61331.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus faecium Com15]
 gi|291608060|gb|EFF37366.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecium E980]
          Length = 444

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 90/330 (27%), Gaps = 40/330 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +AVTG+ GK+S    +  +      +S+ IG           +           +
Sbjct: 103 QNYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSYLIG-----DGTGHGDPQAEFFSFEACE 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              +  +    +  +                      TN+  DH DY+ +    F A   
Sbjct: 158 YRRHFLAYSPDYAIM----------------------TNIDFDHPDYYTSIDDVFTAFQT 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               +  +   AI    D     + K   +       V                      
Sbjct: 196 ----MAGQVKKAIFAYGDDAY--LRKLEADVPIYYYGVTENDDIQARNIERTTSGSAFDV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +     F  P  G+  + NAL    +     +D   V E +     V  RF      
Sbjct: 250 YHGDEFVGHFTVPAFGKHNILNALGVIAVAYFEKLDLKEVAEEMLTFPGVKRRF--SEKI 307

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                +  DYAH    ++  +   R       II VF      R         + ALDLA
Sbjct: 308 VADMTVVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 366

Query: 411 DIAIVTD--DNPRSEDPEKIRAEIIHGIPG 438
           D   + D   + R E       ++   I  
Sbjct: 367 DKVYLCDIFGSAREEQGNVKIEDLGAKIKK 396


>gi|16080031|ref|NP_390857.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310923|ref|ZP_03592770.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315250|ref|ZP_03597055.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320167|ref|ZP_03601461.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324448|ref|ZP_03605742.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3183540|sp|P40778|MURC_BACSU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2293216|gb|AAC00294.1| putative UDP-N-acetylmuramate-alanine ligase [Bacillus subtilis]
 gi|2635463|emb|CAB14957.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485412|dbj|BAI86487.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 432

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 120/402 (29%), Gaps = 56/402 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+     +    +    P++      KFL  +  +         +AVTG  GK+S
Sbjct: 64  VIAGNAFPDTHPEIEKAMSEGIPVIR---YHKFLGDYMKKFTS------VAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +SF IG  +   +   +            +   +  S    +  + 
Sbjct: 115 TTGLLAHVIQNAKPTSFLIGDGTGQGNENSEY-----FVFEACEYRRHFLSYQPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY  +    F+A     E  L      I   
Sbjct: 169 ---------------------TNIDFDHPDYFSSIDDVFDAFQ---EMALQVNKGIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD +   + K   N        G +  F     V +                 F  P  G
Sbjct: 205 DDEH---LPKIHANVPVVYYGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V N+L    LC    IDS+++   L+    V  RF           +  DYAH    
Sbjct: 262 HHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRFNEKQLG--DQVLIDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDP 425
           +++ ++  R     R IV         R Q       +     AD   + D      E+ 
Sbjct: 320 IKVTIEAARQKYPDREIVAVFQPHTFTRTQQFLDEFAESLS-GADCVYLCDIFGSARENA 378

Query: 426 EKI-RAEIIHGIPGFIEKGNRIEAIRTAIEML-----NKQDV 461
            K+   ++   I           ++  A +          D+
Sbjct: 379 GKLTIGDLQGKIHNAKLIEEDDTSVLKAHDKAVLIFMGAGDI 420


>gi|237751733|ref|ZP_04582213.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373099|gb|EEO23490.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 463

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 18/121 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L+  +   + EL+N   I          + V+ + + + +G +F A+  N +D    I
Sbjct: 1   MRLEKALDILYGELVNTPFISA-------FSGVTYNVKKVVSGTLFFAL--NPDD----I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +AIA GA  IV        D      +    + V +  + +  F      +    ++ +
Sbjct: 48  KRAIANGAYGIVFEGDMVCSD-----DTEIAWIKVRSIDQSMRRFVRYFLLESKYTLVML 102

Query: 121 T 121
           T
Sbjct: 103 T 103


>gi|227543135|ref|ZP_03973184.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181123|gb|EEI62095.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 491

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 125/442 (28%), Gaps = 73/442 (16%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   +D    + +     P++   +    L               + + GT GK
Sbjct: 62  VVVTSFAAIPKDNPELVAARELGIPVIRRSDLLAELMK---------DRIQVLLAGTHGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q++GL          ++    +    T          S  S        
Sbjct: 113 TSTTSMAVVAMQQAGLD-PSFAIGGQLNKAGTNAHDGTGRAFVAEADESDAS-------- 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                       L          TN+  DH+D+ +T + YF         +       + 
Sbjct: 164 ------------LLSYAPDVAVVTNIEPDHLDFFKTPEKYFEVFDSFAAVVAENGGELVA 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--------KVCAIHNKQQVTISVEGK 298
             +D ++  + + A              +   +          + A  +   + + V G 
Sbjct: 212 CVEDEHALALARTAPGTVYGYGFAATLVENPTITPLVAVDEVTLTAYGSVATMHVHVPGG 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIG------------IDSALVLEHLEKLHVVPGRF 346
           D   +         +  L AA    A+                  +   +     V  RF
Sbjct: 272 DVVPVEVTVRTPGTHMVLNAAAALGAMFLASKRENGTFDATTLNQLAAGISDFTGVRRRF 331

Query: 347 EFVGTNSRGG----RIYVDYAHTSNSLEMILKNIRTITSGRIIV----------VFGCGG 392
           E  GT  RG     ++Y DYAH    +  +L+  +    G              V  C  
Sbjct: 332 ELKGTVERGPLAGVKVYDDYAHHPTEVAAVLRACKAKAVGEARAAGKPDDERPHVIVCFQ 391

Query: 393 DRDQGKRPIMGK---IALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIPGF-IEKGNRI 446
                +     +    AL LAD AIV D     E+P +    A +   I           
Sbjct: 392 PHLYSRTLKFAEEFGAALSLADHAIVLDIYGAREEPVEGVTGALVAEKIDSTGEYVPGFN 451

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           +A      +    D+++  G G
Sbjct: 452 DAPAAVARVAKPGDIVLTMGAG 473


>gi|15616836|ref|NP_240048.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11133470|sp|P57313|MURD_BUCAI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293622|pir||F84955 UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9)
           [imported] - Buchnera sp. (strain APS)
 gi|10038899|dbj|BAB12934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 440

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 111/348 (31%), Gaps = 45/348 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GKS+VA+ +++I ++SG  +F  G          D                  
Sbjct: 109 ISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLEILDKE---------------- 152

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS  L+      +K       N+  DHI+ +           +     
Sbjct: 153 ----ADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNG------FQQYKNTK 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L   + A I   ++  K      H+   + +S G       +                  
Sbjct: 201 LSVYNQAEICIINSNDKIEKSLIHSKNKKWISFGTNRSDYRICSKSNDPI----LFFKNK 256

Query: 298 KDFDFLFPLPGEFQVYNA-LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K  +    L   +  YN  LV+  +  A+       +  L+    +P RF+ +       
Sbjct: 257 KILNTSEILLYGYHNYNNILVSLAISDAMQFPRNDAINVLKSFSNLPHRFQIIKNEKGVR 316

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I    +   NS ++ L +I+T  + R       GGD       I+  I   L       
Sbjct: 317 WINDSKSTNVNSTQVALNSIKTTGTIR----LLLGGDSKSANFNILKNIFRTLKIKIYCF 372

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +       KI           I   N  +A+    + +   D +++
Sbjct: 373 GRD--GIKLSKICE------KKSIYVENLKKAVILISKQVKSGDTVLL 412


>gi|294648722|ref|ZP_06726182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825397|gb|EFF84140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 453

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 87/282 (30%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +    EV+++         S+    +     ++ +        +       +  + + G+
Sbjct: 223 ETNIDEVLEQGCWTPVVRTSLEPNDQAALSAELISADGSHFKVLENGKVIGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G   RG  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSIEQACEALSNFGGVKRRMELLG-KVRGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           E  L   R  +   ++  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 ETTLDGARKRLGERKLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIAASSNKAEVSRSLDEIIARVVNEAGEGDAVVI 435


>gi|283954408|ref|ZP_06371928.1| hypothetical protein C414_000220025 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794025|gb|EFC32774.1| hypothetical protein C414_000220025 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 313

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++AG+ F        D    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKAGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI +GA  I+  S  +++D             V+N  + L  F            L  
Sbjct: 48  TQAIEKGAYVIITESDIAVEDKE------IFYFKVENLEQALIRFLRFFCEDKECEFLLF 101


>gi|302386831|ref|YP_003822653.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           saccharolyticum WM1]
 gi|302197459|gb|ADL05030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           saccharolyticum WM1]
          Length = 448

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 92/278 (33%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   +    +  N+  DH+D H+T + Y   K R+     P++S  + +
Sbjct: 161 EISSFQLET--ITDFRPDVSAILNITPDHLDRHKTMECYIEVKERITSNQRPQDSCILNF 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D    +        A         +  +         ++  + T      +        
Sbjct: 219 DDPVLREFGAALTPKAVYFSSRQFLEEGYCMEGDRIIWNHNGEKTEIANIHEIQL----L 274

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + AA +   +G+   ++ + + +   V  R EFV   +             +
Sbjct: 275 GRHNHENIMAAAAISAQMGVPMDVIRKVVREFKAVEHRIEFVAEKAGVKYFNDSKGTNPD 334

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +K +         ++   G D++      +      +  + ++       +  EK
Sbjct: 335 AAIQAIKAMPG-----PTLLIAGGYDKNSQYDEWIESFDGKVKYMVLL------GQTREK 383

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    +   +  EA++      N+ D +++
Sbjct: 384 IAECAARHGFTNVMYAEDMQEAVKVCASYANRGDHVLL 421


>gi|170702897|ref|ZP_02893740.1| FolC bifunctional protein [Burkholderia ambifaria IOP40-10]
 gi|170132196|gb|EDT00681.1| FolC bifunctional protein [Burkholderia ambifaria IOP40-10]
          Length = 441

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ-GKRPI 401
           PGR + +        + VD  H   +   +   +RT    R+  V+G   D+D  G    
Sbjct: 304 PGRLQRIKGEPD---VVVDVGHNPQAALALADWLRTSAYRRVRAVYGALTDKDVEGVVRA 360

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQ 459
           +G +  +   +  ++ + PR     ++   +   +P  + +   +   AI    +  +  
Sbjct: 361 LGPLVAEW-HLIDLSQETPRGMPMGELFTRVRAAVPRALVEVQPDVASAIVALRKSADAG 419

Query: 460 DVLVVAG 466
           D ++  G
Sbjct: 420 DCILTFG 426


>gi|46581286|ref|YP_012094.1| folylpolyglutamate synthase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450707|gb|AAS97354.1| folylpolyglutamate synthase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234950|gb|ADP87804.1| FolC bifunctional protein [Desulfovibrio vulgaris RCH1]
          Length = 498

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 11/124 (8%)

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                R     +D AH ++ L  +   +         V+F C  D+D      +      
Sbjct: 351 NPHPCRSLPFILDGAHNTHGLTALRTALEAQGLRPAAVIFSCLADKDTEALVPLLHDIAA 410

Query: 409 LADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-----L 462
            A + + T  DN R+ D   +   +    P         +A+  A  +    DV     +
Sbjct: 411 GAPVIVPTIADNERAADGATLARRMG---PNARAVPRLHDALHEAARLA--GDVTPKHPV 465

Query: 463 VVAG 466
           ++ G
Sbjct: 466 LLCG 469


>gi|93006855|ref|YP_581292.1| UDP-N-acetylmuramate--alanine ligase [Psychrobacter cryohalolentis
           K5]
 gi|109892726|sp|Q1Q945|MURC_PSYCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|92394533|gb|ABE75808.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter
           cryohalolentis K5]
          Length = 479

 Score = 48.0 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 118/380 (31%), Gaps = 44/380 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH    + IA  A+ IVVSSA    +          + VV   R+   L       +G  
Sbjct: 72  GHD--SKNIAN-ADVIVVSSAIDRSNPEVKAALEARLPVV---RRADMLGELMRYRHG-- 123

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +A+ G  GK++  S +  +        ++ IG     S        +        +
Sbjct: 124 ----IAIAGAHGKTTTTSLLTTMMAEGNLDPTYVIGGKLNASGKNAALGSSRFLIAEADE 179

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + +                          +  +A   TN+ +DH++ +        A   
Sbjct: 180 SDASFL----------------------SLHPMAAIVTNIDQDHMETYGNSFDKLKAAYI 217

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F + +P    A++  DD     ++              +      +  V          
Sbjct: 218 QFLQNMPFYGLAVVCGDDPELYAMIDDIGRPVLTFGLEPFNDVQ-AVDLVTEGTKTHFTV 276

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-- 350
           +  + +       +PG   VYNAL A  +    G+D A +   L+K   V  RFE     
Sbjct: 277 LRRDHEPLRLTLNIPGVHNVYNALAAITMATDEGVDDAAITRALQKFEGVGRRFEQHASV 336

Query: 351 -TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIAL 407
             +     +  DY H    ++  +K  R     R +V+        + +       ++  
Sbjct: 337 EIDDGNVLLIDDYGHHPKEVDATIKAARQSFPERRLVMMFQPHRYSRTRDCFDDFVEVLS 396

Query: 408 DLADIAIVTDDNPRSEDPEK 427
              D  ++ D     E P  
Sbjct: 397 S-VDELLLLDVYSAGESPIA 415


>gi|301066756|ref|YP_003788779.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus casei str.
           Zhang]
 gi|300439163|gb|ADK18929.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus casei str.
           Zhang]
          Length = 436

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 80/247 (32%), Gaps = 13/247 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY+   +  ++A      +    +   + + DD + +++  + 
Sbjct: 162 AYHPDYMIMTNIDFDHPDYYTGFEDVYDAFETEANQ---VKKAIVAWGDDPWLRKLKAKV 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                    +  +  F         +         +     F  PL GE  V NAL    
Sbjct: 219 ---PVYYYGISDRDDFQARNVDRDTNGSSFDAYFHDQLIGHFFVPLFGEHSVLNALAVVA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D+ L+   L     V  RF     + +   I  DYAH  N ++  L   R   
Sbjct: 276 VAHMEKLDAKLIARELGNFSGVKRRF--AEKDLKDMIIVDDYAHHPNEIKATLDAARQKY 333

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-AEIIHGI 436
             + I+         R Q   P   ++    AD   +T   +   E   KIR  +I   I
Sbjct: 334 PDKAIIAVFQPHTFSRTQAYEPQYVQVLSQ-ADQTFLTPIFSSAREKTGKIRSEDITAQI 392

Query: 437 PGFIEKG 443
            G     
Sbjct: 393 KGAAVIH 399


>gi|238893071|ref|YP_002917805.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044865|ref|ZP_06017908.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|238545387|dbj|BAH61738.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259037834|gb|EEW39062.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 491

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 120/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  +          PG     N
Sbjct: 238 ELLPRVGRQITTYGFSDDADVRVEDYR-QVGAQGHFRLVRQDKAILQVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDRAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAMLIDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMVFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +A      +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKVDPILVPDSAQAAEMLASVLTGNDLVLVQGAGN 467


>gi|317501229|ref|ZP_07959434.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897405|gb|EFV19471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 454

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 90/278 (32%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T +AY  AK R+ E     +   + Y
Sbjct: 168 EISSFQLET--IHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNY 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   K   ++         S     K I+L     I          +  +      + 
Sbjct: 226 EDDELQK-FGEKTAAQVLYFSSARKLEKGIYLDGTKIICAADVPVELCDVSEL----KIL 280

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A+ +  A G+   ++ ++L     V  R EFV                 +
Sbjct: 281 GTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKRGVLYYNDSKGTNPD 340

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R  ++ G G D+D      +      +  + ++          EK
Sbjct: 341 AAIKGIQA-----MNRPTILIGGGYDKDSEYDEWIKAFDGKVRKLVLL------GATREK 389

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      +G    I      EA    ++     D +++
Sbjct: 390 IAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLL 427


>gi|262037242|ref|ZP_06010724.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
 gi|261748714|gb|EEY36071.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
          Length = 447

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 82/249 (32%), Gaps = 14/249 (5%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           IK      TN+  DH+++H T +       + FE+ +       I   D      +   +
Sbjct: 171 IKPKYSVVTNVEPDHLEHHGTYEN----IKKSFEKFIDSTEKLAILCKDCEDMSTLNIKN 226

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                                          I       +F   +PGE  V N+L    L
Sbjct: 227 KNIIWYSIKKEDVHIFATNITVKDGCTHYEVIKNGKNLGEFTLCIPGEHNVSNSLPVIYL 286

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               G +   V E L +      R++ +       RI  DYAH    +++ ++  +    
Sbjct: 287 ADEAGCNMDTVKERLAQFKGANRRYQVIYDK--NLRIIDDYAHHPTEIKVTIEAAKATEK 344

Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED------PEKIRAEIIH 434
           G + V+F      R +         +L  AD  I+       ED       EK+  +I +
Sbjct: 345 GNVTVIFQPHRYSRTKFFFDDFV-TSLKKADELILLPIYSAGEDNIYDVSSEKLAEKIGN 403

Query: 435 GIPGFIEKG 443
           G+  + E+ 
Sbjct: 404 GVKVYSEEE 412


>gi|212638461|ref|YP_002314981.1| Folylpolyglutamate synthase [Anoxybacillus flavithermus WK1]
 gi|212559941|gb|ACJ32996.1| Folylpolyglutamate synthase [Anoxybacillus flavithermus WK1]
          Length = 434

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 112/382 (29%), Gaps = 37/382 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----------------- 158
             + V GT+GK S   F++ I Q +G                +                 
Sbjct: 42  KAIHVGGTNGKGSTVCFLRHILQEAGYRVGTFTSPYVEQFNERISINGKPISDVDLIKLV 101

Query: 159 -----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
                         L  P+   +  A++      +    V     GL   RLD   +I  
Sbjct: 102 QIIQPLAEELEQTELGGPTEFEVITAMALYYFGKMNVQDVVIFEVGLG-GRLDSTNVIYP 160

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             + +     D+                 ++    P +   D   + +V+++   +    
Sbjct: 161 LLSVITNVGYDHIHILGNTLEQIAFEKAGIIKAGIPVMTAIDQPEALQVVEQKATSVRAK 220

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQ-VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           + V  +   I   +      +    T      D         + +  +  +     +   
Sbjct: 221 VYVLGRDFTIFAHEPTTNGERFSLQTPFTTYSDVTTTMLGAHQVKNASLALMVADYLRTY 280

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
               +  EH+                     I +D AH    ++ ++  ++     R + 
Sbjct: 281 YSFLIEREHMYNGIRKAAWLGRFEKMDERPLIIIDGAHNEEGMDSLVATMKDHYPNRRVH 340

Query: 387 V-FGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           V F   GD+       M      +A+    T  D PR+   E++  +  H  P   +  +
Sbjct: 341 VLFTALGDKPVT---AMIHKLETIAETMTFTTFDFPRALSAEQLAEQATH--PNVQQTND 395

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             + ++   + + K D++++ G
Sbjct: 396 WQQWLKEKRKQVAKDDIILITG 417


>gi|257061316|ref|YP_003139204.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8802]
 gi|256591482|gb|ACV02369.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8802]
          Length = 494

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 131/419 (31%), Gaps = 55/419 (13%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++ S+A +  +    A      PI    +    L               +AV GT GK++
Sbjct: 105 VICSTAIAKNNSEYQAAQEKGCPIFHRSDVLAAL---------ISDYQSIAVAGTHGKTT 155

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S V  +  ++GL                D  +     +   +  ++L S        +
Sbjct: 156 TSSLVGYVLLKAGL----------------DPTIIVGGEVDAWEGNAHLGSSKYLVAEAD 199

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S   L +H         G  TN+  DH D++++ +           +            
Sbjct: 200 ESDGSLVKH-----SPTIGVVTNIELDHPDHYESLEQVVRTFQIFETQCEILVGCI---- 250

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLP 307
                 E ++   N          +     +K +          +   G+        +P
Sbjct: 251 ----DCETVRSQLNPTITYSLDPAKNADYTVKNLTYDAQGTIAEVWERGRFLGQMRLTIP 306

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           GE  V NAL A  +   +G+D  ++ + L        RFE  G ++ G     DYAH  +
Sbjct: 307 GEHNVSNALAAVAVGRKLGLDFQVIADALATFGGAKRRFEHRGYSN-GITFIDDYAHHPS 365

Query: 368 SLEMILKNIR----TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD----- 418
            ++  L   R       S R++ +F       +    +        A   ++  D     
Sbjct: 366 EIQATLSAARSKVDQNGSSRVVAIF-QPHRYSRTATFLADFAQAFQAADLVILSDIYSAG 424

Query: 419 --NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIV 475
             N  +   + +   +       I +        +  ++L   D+ +  G G+    I+
Sbjct: 425 EVNIHNITGQDLANAVKVHHSQVIYEPCLKALTESLPQLLQPGDLALFLGAGNLN-QII 482


>gi|226323684|ref|ZP_03799202.1| hypothetical protein COPCOM_01459 [Coprococcus comes ATCC 27758]
 gi|225207868|gb|EEG90222.1| hypothetical protein COPCOM_01459 [Coprococcus comes ATCC 27758]
          Length = 453

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 104/298 (34%), Gaps = 16/298 (5%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I      +   ++  + +  E SS  L+   +        +  N+  DH++ H T +AY 
Sbjct: 144 IGTPYTNAAADTREDSVIVAELSSFQLES--IHTFHPKVSAVLNITPDHLNRHHTMEAYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AKM + +   P++   + Y +D  ++++      +     S     + I+L     I  
Sbjct: 202 RAKMNIAKNQTPEDICVLNY-EDEETRKMADEFQASVLFFSSKHKLEQGIYL-DGEDIVY 259

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           K +               + G     N + A  +  A G+D  ++ + +     V  R E
Sbjct: 260 KPEKEKEGTVICKTGELQILGVHNYENVMAAVAMAAAYGVDLDVIRKSVLAFKGVEHRIE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +V   +             ++    ++        R  ++ G G D+       +     
Sbjct: 320 YVAEKNGVVYYNDSKGTNPDAAIKGIQA-----MNRPTILIGGGYDKQSDFHEWIQSFDG 374

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++          E+I+ E    G    I K    EA+ T +E+    D +++
Sbjct: 375 KVRYLVLI------GATKEQIQKEAAECGFHDCILKDTFEEALDTCVELARPGDAVLL 426


>gi|34540390|ref|NP_904869.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas gingivalis
           W83]
 gi|37538308|sp|Q51831|MURC_PORGI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34396703|gb|AAQ65768.1| UDP-N-acetylmuramate--alanine ligase [Porphyromonas gingivalis W83]
          Length = 456

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 88/281 (31%), Gaps = 25/281 (8%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K      T+   DH+D + T + Y ++       +    +  + Y      +     
Sbjct: 172 HHLKPFMAIITSADPDHMDIYGTAENYRDSFEHFTSLIQSGGALVLKYGAPVNPR----L 227

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
             +      S   Q        +     +   T    G   +     +P    V NA+ A
Sbjct: 228 GSDVSLFTYSSDDQQADYFASDIMIRDGRLFFTWHYPGGQLEGVELGVPVRINVENAVAA 287

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +    G+    +   +        RFE V    R   +  DYAH    L+  + ++R 
Sbjct: 288 MAIAHLNGVTVEELRSGIASFKGSHRRFEKVLDTER-VVLIDDYAHHPVELDAAIHSVRE 346

Query: 379 ITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRA 430
           I SG+ I+         R         +    L D  ++ D  P  E P        I  
Sbjct: 347 IYSGKHIMGIFQPHLYSRTADFYQDFARSLSML-DEVVLLDIYPARELPLPGVTSRLILD 405

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKG 468
            I +     + K +        ++ L+     DV+++ G G
Sbjct: 406 LIENPNKTLVSKNDL-------LDYLHGNEIPDVVLILGAG 439


>gi|260063711|ref|YP_003196791.1| UDP-N-acetylmuramate--L-alanine ligase [Robiginitalea biformata
           HTCC2501]
 gi|88783156|gb|EAR14329.1| UDP-N-acetylmuramate--L-alanine ligase [Robiginitalea biformata
           HTCC2501]
          Length = 432

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 5/157 (3%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             ++ +       +  I    + F+   F  PG   + N L A  + + +      +++ 
Sbjct: 222 YSIRNLRTEDGAYRFDIHTPTRVFESVRFSKPGRHNLLNGLAAFTMAVQVAEQPDRLVKA 281

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--D 393
           +     V  RF +     +G     DYAH    ++ +   IR +  G+ I+         
Sbjct: 282 MGSFKGVERRFSYKIKTEQGIF-IDDYAHHPTEIDAVCDAIREMHPGKDILAVFQPHLFS 340

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
           R +   P   +      D   + +  P  EDP +   
Sbjct: 341 RTRDFGPEFARSLSRF-DTIWLLEIYPAREDPIEGID 376


>gi|148977787|ref|ZP_01814343.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
 gi|145963001|gb|EDK28271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
          Length = 452

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 106/355 (29%), Gaps = 27/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G      S +     +    +   
Sbjct: 101 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYAPGFLVGGVLGNFSISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIK---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P             ++   + GC   +           K       Q  
Sbjct: 202 -RQFHHLVRTVPGNGRIFSPKQDTAIQDVLSRGCWSDAESSGEAGDWDAKKLVKDGSQFE 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                      ++ L G+  V NAL+A      +G+   L  E L K      R EF G 
Sbjct: 261 VYFQGECVGTVVWDLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  + S +II V         +G        +L  
Sbjct: 320 EVAGVSVYDDFAHHPTAIELTLGGLRNKVDSKKIIAVLEPRSATMKRGVHKETLADSLKQ 379

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +   +      + +               +    +   +      D ++V
Sbjct: 380 ADSTYLFQPDNIDWSVQDVAD---ACHQPAHVSDDMDVFVAKIVSEAQAGDQILV 431


>gi|116491263|ref|YP_810807.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1]
 gi|122276555|sp|Q04EI0|MURC_OENOB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116091988|gb|ABJ57142.1| UDP-N-acetylmuramate--L-alanine ligase [Oenococcus oeni PSU-1]
          Length = 435

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 79/272 (29%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH DY+++     +A     +     +     Y +D   K++  +        
Sbjct: 167 IITNIDWDHPDYYKSLDDVKSAFSEFADH---VKKIIFAYGEDPEIKKIKPKTARILSYG 223

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                     ++ K              +  DF       G+  + +   A  +   +G 
Sbjct: 224 FEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATIE--GDHGILDTTAAIAVADYLGF 281

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386
               + + L        RF           I  DYAH    ++  +   R    + R++ 
Sbjct: 282 SVDQIQKGLLTYQGAKRRFNISQVA--DLTIVDDYAHHPTEIKATIDAARQKFPNKRLVA 339

Query: 387 VFG-CGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKG 443
           VF      R    +      AL  AD   +T    + R +       +I+  +P      
Sbjct: 340 VFQPHTYTRVNAFKDEYVN-ALKSADKVYITPIFGSLREKAGNAKSEDILDKLPNAGAII 398

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGH-ETVHI 474
           +   A            VLV  G G  E    
Sbjct: 399 SESNAYDKL--SAEHGSVLVFMGAGDIEKYED 428


>gi|223985747|ref|ZP_03635791.1| hypothetical protein HOLDEFILI_03097 [Holdemania filiformis DSM
           12042]
 gi|223962257|gb|EEF66725.1| hypothetical protein HOLDEFILI_03097 [Holdemania filiformis DSM
           12042]
          Length = 435

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 94/354 (26%), Gaps = 11/354 (3%)

Query: 83  SATIRSNTPILVVD--NTRKFLS-LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
              I  + PIL  D  N R  ++ +  +      PE   A +                 +
Sbjct: 39  DPLIERHIPILPFDPANIRDGMTVIIGNAFKEDFPEVAAARSNPKVTCYRYHEYLGALMK 98

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
              S    G     ++      +                        +   +    +H L
Sbjct: 99  DYTSLCVAGSHGKTTTTGMLAAMMDEIAPTGHLIGDGSGEIHPDSQYLAVEACEYRRHFL 158

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
                     TN   DH+DY +T+  Y  A    +EE   +    ++   D      ++ 
Sbjct: 159 -AYHPDYAVITNADLDHVDYFKTEADYAKA----YEEFASQVKKGLVLFGDDPKVRALRI 213

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                     V     F  +  V    +     +        F  P  G   ++N+L   
Sbjct: 214 DPKVTHYYYGVDDGNDFQAVNIVETSEDMHFDVLFQGKPQGHFDLPFVGRHLLWNSLGVI 273

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
            L +  G  +  +   L        RF              DYAH    + + +   R  
Sbjct: 274 ALGLLEGYTAEQIEPGLASFKGTKRRFTIEKHGEN--VFVDDYAHHPTEVSITIDAARKR 331

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
               ++I +F                 AL  AD   + D     +  + I  +I
Sbjct: 332 FPGKKLIAIFKPHRVSRVFHFADDFAAALKKADEVYLCDFTSIDDKEDGIDIDI 385


>gi|293376480|ref|ZP_06622709.1| bifunctional protein FolC [Turicibacter sanguinis PC909]
 gi|325842055|ref|ZP_08167592.1| bifunctional protein FolC [Turicibacter sp. HGF1]
 gi|292644902|gb|EFF62983.1| bifunctional protein FolC [Turicibacter sanguinis PC909]
 gi|325489777|gb|EGC92133.1| bifunctional protein FolC [Turicibacter sp. HGF1]
          Length = 426

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/392 (12%), Positives = 103/392 (26%), Gaps = 36/392 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +  A           + + GT+GK S  ++++ + Q +G            S   + +  
Sbjct: 29  AALARLGNPHLKIRTIHIAGTNGKGSTVTYLRSVLQDAGYLVGTFTSPYIESFNERISLN 88

Query: 163 TTPSPIYLAKALSYLSSQ-----------------------GVTHVSVEASSHGLDQH-- 197
             P         + +                           V   +        +    
Sbjct: 89  GVPISDDDLAWCANVVKPIVEEINKTDIGPFTEFELITLISFVYFKNQPVDVVIYEVGLG 148

Query: 198 -RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
            RLD   +I      +     D+                 ++    P     DD    E+
Sbjct: 149 GRLDATNMIQPLACGITNIGHDHEAILGDTLQKIAVEKLGIVKHGVPLFTTEDDDDVLEI 208

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K                      K      +         K             +  ++
Sbjct: 209 FKVTCEGKNSPYLNALSTYAPTNIKNRHEGIQFDWVDLPNVKLNMKGLHQVKNATLAYSI 268

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +       I   S + +    K     GRFE +        I +D AH    ++ + + +
Sbjct: 269 LKYLKEKRIFSISEVNIYRGMKEAFWKGRFELIHDEPA---IILDGAHNPEGMKNLCETV 325

Query: 377 RT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH 434
           +    + R + +     D++      M K    +AD    T  D PR++  +        
Sbjct: 326 QELYPTKRHVFMVSVLKDKEYS---EMFKYLKVVADEVHFTTFDYPRAQSGKNQFES-YS 381

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           G+       +  + +   ++ L  +  L++ G
Sbjct: 382 GL-NADYDEDYEQLLEKLLDHLTDEKCLIITG 412


>gi|153814610|ref|ZP_01967278.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
 gi|145848104|gb|EDK25022.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
          Length = 454

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 90/278 (32%), Gaps = 19/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  N+  DH++ H T +AY  AK R+ E     +   + Y
Sbjct: 168 EISSFQLET--IHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLNY 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD   K   ++         S     K I+L     I          +  +      + 
Sbjct: 226 EDDELQK-FGEKTAAQVLYFSSARKLEKGIYLDGTKIICAADVPVELCDVSEL----KIL 280

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A+ +  A G+   ++ ++L     V  R EFV                 +
Sbjct: 281 GTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKRGVLYYNDSKGTNPD 340

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++        R  ++ G G D+D      +      +  + ++          EK
Sbjct: 341 AAIKGIQA-----MNRPTILIGGGYDKDSEYDEWIKAFDGKVRKLVLL------GATREK 389

Query: 428 IRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      +G    I      EA    ++     D +++
Sbjct: 390 IAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLL 427


>gi|311063967|ref|YP_003970692.1| UDP-N-acetylmuramate--alanine ligase MurC [Bifidobacterium bifidum
           PRL2010]
 gi|310866286|gb|ADP35655.1| MurC UDP-N-acetylmuramate--alanine ligase [Bifidobacterium bifidum
           PRL2010]
          Length = 529

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/433 (13%), Positives = 104/433 (24%), Gaps = 42/433 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ +V SSA    +            I+   +    L          +   ++ V G 
Sbjct: 87  RGADTVVYSSAIKPDNPEIVAAHERGIRIVHRSDILALL---------MNGRRVVTVAGA 137

Query: 124 SGKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            GK++ +S +  I   +G       S    G          D        + +A+A    
Sbjct: 138 HGKTTTSSLLSHILVHAGTGELADPSYAIGGTIQAPGGAVLDGGHAGRGDVLVAEADESD 197

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S      S+   ++ L  H              +               +         
Sbjct: 198 GSFCKYRPSIAVITNALADHLDHYGDEAHYCAAFIDHAGHASGHVVMTGDDEGAVAVLRD 257

Query: 238 LPK---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           L         +    DA     ++ A                                  
Sbjct: 258 LDPSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSGRETFTVHVPASLASVCGCG 317

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG     NA  A    + +G+      +          RF+  G  + 
Sbjct: 318 DADLALPVSLAIPGMHNARNATAAILAAMLLGVTPEAATQAASTFLGASRRFQVRGEEN- 376

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADI 412
           G  +  DYAH    +  +L   R      +I V        + +       +     AD 
Sbjct: 377 GVTVVDDYAHHPTEISALLDAARRRYPRSVIRVLFQPHLFSRTRMFAHEFAEALSK-ADD 435

Query: 413 AIVTDDNPRSE--------DPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEM 455
            IVT   P  E            I  +    +P               +   A +     
Sbjct: 436 VIVTGIFPARELQRDFPDVSAMTIV-DAAQDVPHASAQGDGTWISAVDDMQVAAQMLAMR 494

Query: 456 LNKQDVLVVAGKG 468
               DV+   G G
Sbjct: 495 CRPTDVVFTVGAG 507


>gi|332854694|ref|ZP_08435481.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013150]
 gi|332865574|ref|ZP_08436414.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013113]
 gi|332727851|gb|EGJ59253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013150]
 gi|332735226|gb|EGJ66303.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013113]
          Length = 445

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 88/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 152 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 210

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 211 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQ 270

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G  + G  +Y D+AH   ++
Sbjct: 271 HSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGMIN-GIEVYDDFAHHPTAI 329

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 330 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 382

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 383 LDW-DLQPVIEAATNHAQVSRSLDEIIERIVNEAGEGDAVVI 423


>gi|329572871|gb|EGG54496.1| UDP-N-acetylmuramate--L-alanine ligase [Enterococcus faecalis
           TX1467]
          Length = 379

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 87/306 (28%), Gaps = 38/306 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   +AVTG+ GK+S    +  +      +S+ IG                P   + A  
Sbjct: 39  PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFE 89

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                   + +                         TN+  DH DY+++ +  F+A  + 
Sbjct: 90  ACEYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQT 130

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K   A         K + +           V  +                    
Sbjct: 131 MAHQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVY 185

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                   F+ P  G   + NAL    +     +D   V E +     V  RF     + 
Sbjct: 186 HKADFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS- 244

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
               I  DYAH    ++  +   R       II VF      R         + ALDLAD
Sbjct: 245 -DMIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLAD 302

Query: 412 IAIVTD 417
              + +
Sbjct: 303 EVFLCN 308


>gi|262165235|ref|ZP_06032972.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio mimicus
           VM223]
 gi|262024951|gb|EEY43619.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio mimicus
           VM223]
          Length = 421

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 109/371 (29%), Gaps = 28/371 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +        P  + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMESILLQAGYSVGVYSSPHLIRYNERVRINGQDLPDEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                        VS+     G    L   +   + ++       GR             
Sbjct: 106 TQAFAHIEHQRGEVSLSLFEFGTLAALYLFQQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNAL----VAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +     + E                  +L     A  L         +    + +     
Sbjct: 226 QFSYEKTSETTWHWRSGRFELTDLPIPSLPLPNAATALMALGCSGLEISDIDIVEGLRNA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   SR   I +D AH  +S   +++ ++     + I +V G   D+D       
Sbjct: 286 QLAGRMQVISREPIIVLDVAHNPHSAHYLVEQLKQRYPHQTIHLVLGMLHDKD------- 338

Query: 403 GKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
             IA  +A++  V           PR+   E++   +  G   +    N + A   A+  
Sbjct: 339 --IASTVAELKSVVSHWYPASLSGPRAATAEQLCQYLSAGNTQY---ANPVAAFEAALTQ 393

Query: 456 LNKQDVLVVAG 466
            +  DV+VVAG
Sbjct: 394 TSVHDVIVVAG 404


>gi|308233776|ref|ZP_07664513.1| UDP-N-acetylmuramate--alanine ligase [Atopobium vaginae DSM 15829]
 gi|328943775|ref|ZP_08241240.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae DSM
           15829]
 gi|327491744|gb|EGF23518.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae DSM
           15829]
          Length = 470

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 90/277 (32%), Gaps = 13/277 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+D+++T     +     F +L+      ++  ++ +  E+ +  +
Sbjct: 176 LNPDVVVITNIEADHLDHYKTMDNLEHT-FCEFMDLVGDAGTIVVCGENHHCVELARSTN 234

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP-LPGEFQVYNALVAAG 320
                                        V  + +G       P  PG+  V NA     
Sbjct: 235 RHVVTYGFDETCDYVCKQTVQSHKIRNNFVVCAPDGSCLSISLPANPGKHNVLNATATMA 294

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +   +G++       L        RF  VG       +  DY H    ++  L   + + 
Sbjct: 295 VADVLGVNLQDAAHALSNFKGAHRRFTHVGDIDDICVVD-DYGHHPTEIKATLAAAKNLE 353

Query: 381 SGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEII 433
             RI+ VF      R Q  +      A D AD+ IVT+     E P        +  +I 
Sbjct: 354 FNRIVCVFQPHRYSRTQNLQDEFAH-AFDDADVLIVTEVFSAGETPIPGVNGMMLAEKIQ 412

Query: 434 HGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                        + + +   + ++   D+++  G G
Sbjct: 413 ASTKHCDVTFVSQKKDVVAHLLSIVRPHDLIITQGAG 449


>gi|104773824|ref|YP_618804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|118595661|sp|Q1GAT6|MURD_LACDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|103422905|emb|CAI97567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 460

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 115/398 (28%), Gaps = 62/398 (15%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---- 131
            Y     +       PI+         S              + VTG++GK++       
Sbjct: 84  PYENPMVAKASEKGVPIITEPEVALSASE----------SPYVCVTGSNGKTTTVMLTQQ 133

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +    Q+ G  +  +G      S    N+      + +                 E SS
Sbjct: 134 IMDHYLQKQGHHAHAVGNIGCPISEVVLNQAGPDDLLVV-----------------EMSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T   Y +AK+ +       +     +    
Sbjct: 177 FQL-MGVTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYFLANFDQKD 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 K                 F   +       ++ + I+           LPG   
Sbjct: 236 ILAREEKATKAKILTFSENDPVADFYIGQDYLMHGEEKMMKIAD--------IKLPGIHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA G+   +G     +   L        R ++V T           +    +  +
Sbjct: 288 LQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVTTLDGVKVYNDSKSTNIEAATV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD------IAIVTDDNPRSEDP 425
            +++ +        V+   G DR        G +   L D       AIVT    R    
Sbjct: 348 AIQSFKQPE-----VLLAGGLDR--------GFVFDSLVDLFKKHVKAIVTYGETRYLLA 394

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 395 DAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|90408125|ref|ZP_01216294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Psychromonas sp. CNPT3]
 gi|90310737|gb|EAS38853.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Psychromonas sp. CNPT3]
          Length = 446

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 110/353 (31%), Gaps = 29/353 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSS-FQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             +LAV GT GK+S AS +  I + + +   F IG        +     T    I     
Sbjct: 103 RWVLAVAGTHGKTSTASMLAWILEYANMKPGFLIGGVPENFGLSARLGETPFFVIE---- 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                +        +  S  +  H             NL  DH D  +   A    +   
Sbjct: 159 -----ADEYDCAFFDKRSKFVHYH------PRTLVLNNLEFDHADIFENLDAIKK-QFHH 206

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               +P          D     V      +    L     G+   + K+    +K  V +
Sbjct: 207 LIRTVPSSGRIFFPNQDEALMAVKHMGCWSEVEYL-----GENWSINKIQEDGSKFDVLL 261

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           + +  +    +PL G+  + NAL A      +G+   +  + L     +  R E  G  +
Sbjct: 262 NAKI-EGRVDWPLIGDHNINNALGAIAAARHVGVTPEISTQALASFKSIKRRMEVKGVVN 320

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLAD 411
               +Y D+AH   ++   L  +R  +   RII V     +  +        + AL  AD
Sbjct: 321 H-VTVYDDFAHHPTAINTTLLGLRAKVGEARIIAVVEPRSNTMKLGIQKEALVNALTSAD 379

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +          +  E    +    E     +      E+    D +++
Sbjct: 380 KIYFYESADMQWSIADLFMEQGKKVDISTEIDTLAD---KLAEIARPGDHILI 429


>gi|321312518|ref|YP_004204805.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
 gi|320018792|gb|ADV93778.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis BSn5]
          Length = 432

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 120/402 (29%), Gaps = 56/402 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+     +    +    P++      KFL  +  +         +AVTG  GK+S
Sbjct: 64  VIAGNAFPDTHPEIEKAMSEGIPVIR---YHKFLGDYMKKFTS------VAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + Q +  +SF IG  +   +   +            +   +  S    +  + 
Sbjct: 115 TTGLLAHVIQNAKPTSFLIGDGTGQGNENSEY-----FVFEACEYRRHFLSYQPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY  +    F+A     E  L      I   
Sbjct: 169 ---------------------TNIDFDHPDYFSSIDDVFDAFQ---EMALQVNKGIIACG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD +   + K   N        G +  F     V +                 F  P  G
Sbjct: 205 DDEH---LPKIHANVPVVYYGTGEENDFQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V N+L    LC    IDS+++   L+    V  RF           +  DYAH    
Sbjct: 262 HHNVLNSLAVIALCHYEEIDSSIIKHALKSFGGVKRRFNEKQLG--DQVLIDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDP 425
           +++ ++  R     R IV         R Q       +     AD   + D      E+ 
Sbjct: 320 IKVTIEAARQKYPDREIVAVFQPHTFTRTQQFLDEFAESLS-GADCVYLCDIFGSARENA 378

Query: 426 EKI-RAEIIHGIPGFIEKGNRIEAIRTAIEML-----NKQDV 461
            K+   ++   I           ++  A +          D+
Sbjct: 379 GKLTIGDLQGKIHNAKLIEEDDTSVLKAHDKAVLIFMGAGDI 420


>gi|218130105|ref|ZP_03458909.1| hypothetical protein BACEGG_01692 [Bacteroides eggerthii DSM 20697]
 gi|217987609|gb|EEC53937.1| hypothetical protein BACEGG_01692 [Bacteroides eggerthii DSM 20697]
          Length = 417

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 93/363 (25%), Gaps = 10/363 (2%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSP 167
           +  H    + V GT+GK S +  +  I Q +G           +    +        P  
Sbjct: 41  HPHHSFRTIHVAGTNGKGSCSHTLAAILQEAGYRVGLYTSPHLVDFRERIRINGQPIPEK 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +             H S    +  +        K+            +D         
Sbjct: 101 YVVDFVEKERDFFEPLHPSFFELTTAMAFRYFADEKVDVAVIEVGLGGRLDCTNIIHPDL 160

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                +  + +      +       +  +                        +  A   
Sbjct: 161 CIITNISFDHVQFLGDTLAKIAGEKAGIIKAGIPVVIGETTPETKPVFLQKAAEEKAPII 220

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPG 344
             + T+  +            + +    ++AA   +      ID   +      +  + G
Sbjct: 221 FAEDTMKNDYPKMKTELQGLYQIKNTRTILAALPLLKEAGYRIDEQSIRSGFAHVCELTG 280

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMG 403
                        +  D  H    +  I++ ++  T  ++ ++ G   D+D      ++ 
Sbjct: 281 LMGRWQKLQDAPTLICDTGHNVGGITYIVEQLKQQTYRQLHIIIGMVNDKDISGVLSLLP 340

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           K A      A V     R+   E++               +   A+  A E  + +D + 
Sbjct: 341 KDATYYFTKASVK----RALPAEELCKLAAQNGLQGSCYPDVPAAVTAAQEKSHPEDFIF 396

Query: 464 VAG 466
           V G
Sbjct: 397 VGG 399


>gi|160883885|ref|ZP_02064888.1| hypothetical protein BACOVA_01858 [Bacteroides ovatus ATCC 8483]
 gi|156110615|gb|EDO12360.1| hypothetical protein BACOVA_01858 [Bacteroides ovatus ATCC 8483]
          Length = 458

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 107/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQSHVECTAF-LGGISKNYGTNLLLSQASPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T+   DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMTV-------------------ITSTDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQPGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++   +  D    +P    + N + A  L    G+    +   +     V  RF+F   
Sbjct: 264 FVAPGTRINDIQLGIPVSINIENGVAAMALAHLNGVTDEEIKRGMASFRGVDRRFDF-KL 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
            +       DYAH  + ++  + ++R +   + I          +  R      A  L+ 
Sbjct: 323 KNDRIVFLSDYAHHPSEIKQSVLSMRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+++L
Sbjct: 382 LDEVILVDIYPAREAP-------IPGVTSKLIYDNLRPGIEK--SMCKKEEIL 425


>gi|295098905|emb|CBK87994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           cylindroides T2-87]
          Length = 436

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 126/397 (31%), Gaps = 52/397 (13%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTGTSGKS 127
           ++   Y     +  I    PI  V + ++      +               AVTGT GK+
Sbjct: 57  LLEKDYPFVVKNPGIPYRVPI--VKHFQEAGVPIYTEIEIAYRFAPGFKYAAVTGTDGKT 114

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + + ++       +   G   T  S                   + +  +   +V++
Sbjct: 115 TVTTLLYEMLNA-KEKALVAGNIGTPLSEL-----------------ALIHQEETFNVAL 156

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E S+  L    +D  +      TNL  DH+DY  + + Y+ +KM +++    ++      
Sbjct: 157 ELSNFQLL--GIDTFQPKISVVTNLAPDHLDYMDSLEEYYQSKMLIYKNCNSQDWFIR-- 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  +     +         S+  +           + ++    +S           + 
Sbjct: 213 NIDDENIVKYAQNIPCQVINFSLTQEADLYKDDTFAYLKDEILFKLSD--------LKIV 264

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+F   NA++AA +   +GID   +   +     V  R E+V T +         A  ++
Sbjct: 265 GDFNCGNAMMAACMAYKMGIDLETIQSVIRSFKGVEHRIEYVNTINGVRFYNDSKATNTH 324

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L             V    G +D+       K                      +
Sbjct: 325 AACAALSAFDK-------NVILLCGGKDKHISFDDLKQYDHKIKHCF---------SFGQ 368

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +                 +A+  AIE++ + DV+++
Sbjct: 369 TKDHFKSIFTNQTSCQTMKDALDHAIEIIEEGDVILL 405


>gi|226952812|ref|ZP_03823276.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|226836433|gb|EEH68816.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. ATCC 27244]
          Length = 453

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 87/282 (30%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +    EV+++         S+    +     ++ +        +       +  + + G+
Sbjct: 223 ETNIDEVLEQGCWTPVVRTSLEPNDQAALSAELISADGSHFKVLENGKVIGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G   RG  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSIEQACEALSNFGGVKRRMELLG-TVRGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           E  L   R  +   ++  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 ETTLDGARKRLGERKLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIAASSNKAEVSRSLDEIIARVVNEAGEGDAVVI 435


>gi|238797708|ref|ZP_04641203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
 gi|238718460|gb|EEQ10281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
          Length = 438

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 137/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + +V +              ++P  I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSDAADAGVEIVGDIE--------LFCRENPAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L K  + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVP-------------ALTLLKQENQLV-------VL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TTSLRASAATILNVTEDHTDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG         ++          +  E         L 
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWL-------RVQGEKVLNTREMKLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+GI  +  L+ L     +P RF+ V  ++    I    A    
Sbjct: 266 GRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLVFEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L+ ++    G + ++ G  G   D     R + G       D   V       E+
Sbjct: 326 STEAALEGLQ--VDGTLHLLLGGDGKSADFSGLTRFLQG-------DQIKVYCFGRDGEE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R E+              +A+    + L   D++++
Sbjct: 377 LAALRPEVSQ------LTETMEQAMVLLSKNLAPGDMVLL 410


>gi|319937676|ref|ZP_08012079.1| hypothetical protein HMPREF9488_02915 [Coprobacillus sp. 29_1]
 gi|319807111|gb|EFW03725.1| hypothetical protein HMPREF9488_02915 [Coprobacillus sp. 29_1]
          Length = 403

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 110/371 (29%), Gaps = 22/371 (5%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                     +N++ + GT+GK S  ++++ I    G           I    +      
Sbjct: 29  LNRCHIHMKQKNMIHIAGTNGKGSTVNYLRSILNAHGFRVGTFTSPYLICHNDRIRVDDQ 88

Query: 165 PSPIY--LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           P      L     Y        +S+      +       + L             D    
Sbjct: 89  PISDEDLLKYVNQYYDIIEEDGLSMFEIDVLIMLAYFQSLDLDYRIIETGIGGLHDKTNV 148

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS------VGYQGKF 276
                +A   +  +   +   +I    +     +                          
Sbjct: 149 IDPIISAITNIGMDHQKQLGESIYDIINEKMGIIKPHQMFITSEAKGTILARLQEQCDVQ 208

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             +  V   +   +       ++  F     G +QV NA +A  +   +      +    
Sbjct: 209 EAVMYVVPEYQVSRYPFHFRYRNMAFTLKNQGIYQVTNARLALTIASKLITLDTQLTTSA 268

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
            +     GR+E +    + G + +D AH    ++ +++ +R      I ++F C  D+D 
Sbjct: 269 IENAAWKGRYETLPY--QDGTVEIDGAHNLPGIKALIQTLRVKKEENISIIFSCLDDKDV 326

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA-IEM 455
                M  + L       +T  N    D   I    +   P  I   N +EA++TA I+ 
Sbjct: 327 Q---PMLDLMLKEGYTVYLTTFN----DDRAIDITTVESQPHLIIVDNFVEALQTAYIKK 379

Query: 456 LNKQDVLVVAG 466
            +    +V+ G
Sbjct: 380 SH----IVITG 386


>gi|257869275|ref|ZP_05648928.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2]
 gi|257803439|gb|EEV32261.1| UDP-N-acetylmuramate-alanine ligase [Enterococcus gallinarum EG2]
          Length = 444

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 87/307 (28%), Gaps = 38/307 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            P   +AVTG+ GK+S    +  +      +SF IG           +           +
Sbjct: 103 QPYTSIAVTGSHGKTSTTGLLSHVLSGVRPTSFLIG-----DGTGHGDPNAEFFSFEACE 157

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
              +  +    +  +                      TN+  DH DY+Q+    F+A   
Sbjct: 158 YRRHFLAYSPDYAIM----------------------TNIDFDHPDYYQSIDDVFSAFQS 195

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +++                  + K   +       V                  +   
Sbjct: 196 MAKQVKKGIFAFG------DDAYLRKLEADVPIYYYGVNDDDDVQAKNIQRTTTGSEFDV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                    F+ P  G+  + NAL    +    G+D   V E +     V  RF      
Sbjct: 250 YIHNENIGHFVLPAFGQHNINNALGVIAVAYKEGLDMTEVAEEMLSFPGVKRRFSEKKVA 309

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLA 410
                I  DYAH    +   +   R       II VF      R         + ALDLA
Sbjct: 310 --DMTIVDDYAHHPAEIRATIDGARQKYPEKEIIAVFQPHTFTRTIALMDEFAE-ALDLA 366

Query: 411 DIAIVTD 417
           D   + D
Sbjct: 367 DSVYLCD 373


>gi|226356422|ref|YP_002786162.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus deserti VCD115]
 gi|226318412|gb|ACO46408.1| putative UDP-N-acetylmuramate--L-alanine ligase (UDP-N-
           acetylmuramoyl-L-alanine synthetase) [Deinococcus
           deserti VCD115]
          Length = 476

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 80/271 (29%), Gaps = 10/271 (3%)

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
             +      +       Q  Y+              S +      A    +      A  
Sbjct: 194 CETAVFTNAEDDHVGGNQATYWETVEEQHAGFARFVSQSDRVLFCADWPGLETLCEGAAE 253

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIA 324
           R+     +G       +         T+   G++       LPG   V NAL A  +   
Sbjct: 254 RLTYGQAEGADYRAVNLHPDAEGTSFTVHWRGEELGQARVGLPGVHNVLNALAALAVAHL 313

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
            G +       L        R++ +G    G  I  DYAH +  +   ++  R       
Sbjct: 314 YGGNFTQAAGALASFGGPGRRWQRIG-ELNGALIIDDYAHNATKVAAAVQAARQTGRRVR 372

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-------HGIP 437
           +V       R Q   P +    +D AD  ++ D    SE P +     +        G  
Sbjct: 373 VVFQPHRYLRTQQSWPRLADALMD-ADEVLLLDIAAASEAPIEGIHATLISTRMTEQGHT 431

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           G     +R + ++   +     D++V  G G
Sbjct: 432 GVHYLPDRADVLQLLRDTAAPGDIIVTMGAG 462


>gi|91205696|ref|YP_538051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii RML369-C]
 gi|118595687|sp|Q1RI52|MURD_RICBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91069240|gb|ABE04962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia bellii
           RML369-C]
          Length = 450

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 113/389 (29%), Gaps = 45/389 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  N  I +  +   F              N+LAVTGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVKIAKNFNIPITSDIDLF-------FEKSKGLNLLAVTGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                             +        +E S
Sbjct: 120 ALISHILSDNGLDYPVAGNIGVPV---------------------LQAKASKGGYVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD  +            N+  DH+D H+  + Y  AK ++F+ +       I   +D
Sbjct: 159 SFQLDLVKTFA--AKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGIINIDND 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +           +++             +            +  K       L G  
Sbjct: 217 YCHEIFTNLQQKHHIKLIPFSVTKILEKGISIVNDIITDNFFEHISFK-LISNKSLQGIH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N   +  +   IG++   ++E +     +P R +++G            A       
Sbjct: 276 NSENIAASYAVARIIGLEPVKIIESISSFQGLPHRMQYLGNIDDINFYNDSKASN---AI 332

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +++I+ + +   +          +  +P   KI                    +++ A
Sbjct: 333 AAVQSIKALDNIYWLAGGIAKEGGIEEIKPYFSKIKKAYF-----------YGQAKEMFA 381

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                I  F+   +  +A   A +   K 
Sbjct: 382 NTAKDIIDFVICDDLKQAFELAYKDACKD 410


>gi|219681589|ref|YP_002467975.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682147|ref|YP_002468531.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471275|ref|ZP_05635274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254766040|sp|B8D916|MURD_BUCA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766041|sp|B8D7C1|MURD_BUCAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219621880|gb|ACL30036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624432|gb|ACL30587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311085959|gb|ADP66041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086534|gb|ADP66615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087114|gb|ADP67194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087659|gb|ADP67738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 440

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 111/348 (31%), Gaps = 45/348 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GKS+VA+ +++I ++SG  +F  G          D                  
Sbjct: 109 ISITGTNGKSTVATMIEKIAKKSGYKAFLGGNIGVPVLEILDKE---------------- 152

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS  L+      +K       N+  DHI+ +           +     
Sbjct: 153 ----ADLYIIELSSFQLE--NTFNLKSKIAVILNISEDHINRYPNG------FQQYKNTK 200

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           L   + A I   ++  K      H+   + +S G       +                  
Sbjct: 201 LSVYNQAEICIINSNDKIEKSLIHSKNKKWISFGTNRSDYRICSKSNDPI----LFFKNK 256

Query: 298 KDFDFLFPLPGEFQVYNA-LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
           K  +    L   +  YN  LV+  +  A+       +  L+    +P RF+ +       
Sbjct: 257 KILNTSEILLYGYHNYNNILVSLAISDAMQFPRNDAINVLKSFSNLPHRFQIIKNEKGVR 316

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
            I    +   NS ++ L +I+T  + R       GGD       I+  I   L       
Sbjct: 317 WINDSKSTNVNSTQVALNSIKTTGTIR----LLLGGDSKSANFNILKNIFRTLKIKIYCF 372

Query: 417 DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +       KI           I   N  +A+    + +   D +++
Sbjct: 373 GRD--GIKLSKICE------KKSIYVENLKKAVILISKQVKSGDTVLL 412


>gi|161505077|ref|YP_001572189.1| hypothetical protein SARI_03211 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866424|gb|ABX23047.1| hypothetical protein SARI_03211 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 445

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 94/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +        ++    
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESLFFVIE 146

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 147 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 195

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +        D    + +     +    V   G+                     
Sbjct: 196 VRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGE- 254

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 255 ----KVGDVKWGLVGEHNMHNGLMAIAATRHVGVAPAEAASALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 310 HGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 365 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV 420


>gi|117919928|ref|YP_869120.1| FolC bifunctional protein [Shewanella sp. ANA-3]
 gi|117612260|gb|ABK47714.1| FolC bifunctional protein [Shewanella sp. ANA-3]
          Length = 432

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 112/367 (30%), Gaps = 23/367 (6%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++ V GT+GK +  + ++ I + SGL+         +    +       +      A
Sbjct: 56  PSKVVTVGGTNGKGTTCAMLENILRLSGLTVGVYSSPHMLKYNERVRINGQDASDEAFVA 115

Query: 174 LSYLSSQGVTHVSVEASSHG------------LDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                      +S+    +             LD   L+         TN+    I    
Sbjct: 116 AFEQIEAARGEISLTFFEYATLAGLILFKAAKLDVVILEVGLGGRLDATNMIDADISVVT 175

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +      A +    EL+ +E   I          ++   +            G  ++   
Sbjct: 176 SIDLDHEAYLGNTRELVGREKAGIFRQGRPA---IVGEPNLPHTVNDVAQDVGAKLYRVG 232

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLH 340
               + +   T   +G+ F+          + NA     +        +A +++      
Sbjct: 233 EEFSYQQDGQTWDYQGQVFNLKQLSLPTLPLPNAATVIAIVEHGWPHITADIIDKGISSA 292

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            + GR E V   +    I +D AH  ++   ++K +  + +G+   VF   G        
Sbjct: 293 RLTGRLEQV---NEQPLILLDVAHNPHAARFLVKQLTPMVTGKR--VFALCGMLKDKDIA 347

Query: 401 IMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +  +   L D   +      R  +   +R  +        E G+   A       +   
Sbjct: 348 GVLPVISPLIDTWYLVSLQGERGANASLLRQTLAQD-TKAHEFGDIAAAWTALKAQIQPD 406

Query: 460 DVLVVAG 466
           DV++V G
Sbjct: 407 DVVIVFG 413


>gi|238916668|ref|YP_002930185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           eligens ATCC 27750]
 gi|259509787|sp|C4Z534|MURD_EUBE2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|238872028|gb|ACR71738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           eligens ATCC 27750]
          Length = 450

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 87/282 (30%), Gaps = 18/282 (6%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +   E SS  L+   +     I  +  N+  DH++ H T + Y   K R+ E     ++ 
Sbjct: 159 YTVAEISSFQLET--VHEFHPIVSAILNITPDHLNRHHTMECYAWTKERISENQTKADTC 216

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   +D Y  +             S        ++      +        +        
Sbjct: 217 VL-NLEDKYLTDFAPECKANVVWFSSERKPSVGAYVDGEMIKYTDGTNDYDMLN---VHD 272

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             L G+    N   A  +  A GI   +++E ++K   V  R E+V T +          
Sbjct: 273 MNLLGKHNYENVCAAIAMTKAAGIPDDIIIEQVKKFKAVEHRIEYVATKNGVDYYNDSKG 332

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
               +    ++ +      +  ++ G G D+      +  K   D   + ++       +
Sbjct: 333 TNPEAAVKAIEAMV-----KPTILIGGGYDKGSEF-DLYVKAFKDKVKLLVLI-----GQ 381

Query: 424 DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              KI       G        +  + +    +     D +++
Sbjct: 382 TSAKIADTCKKYGFENIEYADSMEQVVDICAKNAVSGDAVLL 423


>gi|167756017|ref|ZP_02428144.1| hypothetical protein CLORAM_01537 [Clostridium ramosum DSM 1402]
 gi|237734002|ref|ZP_04564483.1| folyl-polyglutamate synthetase [Mollicutes bacterium D7]
 gi|167704009|gb|EDS18588.1| hypothetical protein CLORAM_01537 [Clostridium ramosum DSM 1402]
 gi|229382828|gb|EEO32919.1| folyl-polyglutamate synthetase [Coprobacillus sp. D7]
          Length = 389

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 101/329 (30%), Gaps = 18/329 (5%)

Query: 86  IRSNTPILVVDNTRKFLSL----FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG 141
           I+S    +    T++ L           +  + +NI+ + GT+GK S  +F++ I    G
Sbjct: 5   IKSALVYIESKRTKRTLEQFKETIKKYGFNIYQKNIIHIAGTNGKGSTTNFIKDIMVEHG 64

Query: 142 LSSFQIGPTSTISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLD 200
                      I    +            L   ++ L     +          L   R  
Sbjct: 65  YRVGTFTSPYLICHNDRICINGEMISDERLLMIINSLVEIIESEQLSMFEIDILIMLRYF 124

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             + +       G   ++          + +              +     +   ++K  
Sbjct: 125 DEEELDYRIIETGIGGLNDKTNVIDSVCSVITNIGYDHQFMLGDTLAQIAHHKAGIIKPE 184

Query: 261 HNAGCRVLSVGYQGKFIHLKKVC-------AIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
                  ++      F    ++         I    +         +D+     G +QV 
Sbjct: 185 QTCFTSEINNDLIDIFKAAAEIKNSQVVSVEIDCDYRYPYHFSCLGYDYQLSNCGSYQVA 244

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           NA +A  +C  +      +++        PGRFE  G        Y+D AH  + ++ ++
Sbjct: 245 NATLAINVCDYLIELDHSLVQRALDGFSWPGRFEKFGKI------YLDGAHNIDGIKALI 298

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           K +      + +V+F   GD+D  +   +
Sbjct: 299 KTLHDQQIKKALVIFSALGDKDIEQMEAL 327


>gi|163738713|ref|ZP_02146127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388041|gb|EDQ12396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
          Length = 465

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 126/412 (30%), Gaps = 46/412 (11%)

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVD---NTRKFLSLFASRLYGKHPE--NI 117
           A    A  +V      L      +     +  V    +   F    A+R + +  +   I
Sbjct: 63  AFDDIASLVVSPGIPHLYPKPNPVIHAALVAGVPVDNDIGLFFRSVATRGWERFDQAPRI 122

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG++GKS+  + +  I Q +G  S   G                   + L       
Sbjct: 123 VAVTGSNGKSTTVALLHHILQEAGRESQLAGNIGRGVLDIDPPGSGGIVVLEL------- 175

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                       SS+  D  R   +      FTNL  DH+D H     YF AK RLF E 
Sbjct: 176 ------------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEG 221

Query: 238 LPKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            P  +   +  D+    A                 S    G    +       ++ +   
Sbjct: 222 GPDRAIIGVDEDEGLYLAGQLSEAASDDRVIRISASQKLTGLGWQVFARKGFLSEYRKGR 281

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                D   +  LPG     NA  A     A+G+   L+ + L     +P R + + T++
Sbjct: 282 QAASIDLRQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRSQTIATHA 341

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
               +    A   +S    L     I   R I     G ++D G   + G+         
Sbjct: 342 GVRYVNDSKATNLDSAVKALSAFDNI---RWIC---GGLEKDGGLEALRGQTGKVRKAYV 395

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I         +      ++              EA+  A       D +++A
Sbjct: 396 I-------GREAAGFAMQLDV---EAEVCITMAEAVARASAEAETGDTVLLA 437


>gi|82775495|ref|YP_401842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           dysenteriae Sd197]
 gi|309787236|ref|ZP_07681848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
 gi|118595691|sp|Q32K04|MURD_SHIDS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81239643|gb|ABB60353.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella
           dysenteriae Sd197]
 gi|308924814|gb|EFP70309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
          Length = 438

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 133/403 (33%), Gaps = 64/403 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA---DIAIVTDDNPR 421
           S E  L  +     G + ++ G  G   D     R + G          D   +      
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGVQL------ 377

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +R E+              +A+R     +   D++++
Sbjct: 378 ----AALRPEVAEKT------ETMEQAMRLLAPRVQPGDMVLL 410


>gi|89093246|ref|ZP_01166196.1| folylpolyglutamate synthase [Oceanospirillum sp. MED92]
 gi|89082542|gb|EAR61764.1| folylpolyglutamate synthase [Oceanospirillum sp. MED92]
          Length = 419

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 8/196 (4%)

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
           YQ       +        +   +   +      PLP       +             SA 
Sbjct: 215 YQADQQFSFEKTKKGWHWKGLNADGSEQIINDLPLPSLPLQNASTAIQVCQHIPLNVSAD 274

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG 391
            ++   +   + GR +       G   ++D AH   + E++ K I+ +    + ++ G  
Sbjct: 275 QIKTGLQTATLTGRMQ--KLEVDGVNYWLDVAHNPEAAELLAKRIKDMP-KPVTLLLGML 331

Query: 392 GDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
            D+D      +  +   + D   +TD N PR +    + A +  G+   ++      AI 
Sbjct: 332 ADKDCQ---QVIDLITPVVDSIYLTDLNVPRGQKASALAALLPSGV-HALQADTVKSAIE 387

Query: 451 TAIEMLNKQDVLVVAG 466
              +  N ++ +++AG
Sbjct: 388 QIKKHTNAEENVIIAG 403


>gi|42518896|ref|NP_964826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii NCC 533]
 gi|62900556|sp|Q74JY5|MURD_LACJO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|41583182|gb|AAS08792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii NCC 533]
          Length = 460

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 119/393 (30%), Gaps = 52/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y         + + P++            A  +        + VTG++GK++     Q+
Sbjct: 84  PYENPMVEKAEKLDIPVITEP-------EIALNVSEAP---YVCVTGSNGKTTTVMLTQR 133

Query: 136 IC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      ++G  ++ +G      S   + + T+   + +                 E SS
Sbjct: 134 IMDHNLSKNGGHAYAVGNIGVPISEVVE-KATSKDLLVV-----------------EMSS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T   Y  AK+R+ +     +     +    
Sbjct: 176 FQL-LGVTDIKPKVAAIVDIYNNVHLDYHKTFDNYVEAKLRITQSQDQDDYFIANF---D 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K       +V +     K             +     ++  D      +PG   
Sbjct: 232 QKNILEKELDKTKAKVQTFSETDKTADYFIGDEYLESKDDHHIMKISDI----KIPGIHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N LVA  +   +G D + +   L        R ++V T +         +    +  +
Sbjct: 288 QQNCLVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMTYNDRKIYNDSKSTNIEAATV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +        ++       E    +   
Sbjct: 348 AIPSFKEPE-----VLIAGGLDRGFMFDSLVP-LFKKHVKSIVL-----YGETKYLLADA 396

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E+    DV++
Sbjct: 397 ARKAGIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|227889755|ref|ZP_04007560.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849619|gb|EEJ59705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 460

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/389 (13%), Positives = 112/389 (28%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y         + N P++            A  +        + VTG++GK++     Q+
Sbjct: 84  PYENPMVEKAEKLNIPVITEP-------EIALNVSEAP---YVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I                 +    +  +     +  A +   L  +  +   +  +     
Sbjct: 134 IMDHHLSK------NGGHAYAVGNIGVPISEVVEKATSKDLLVVEMSSFQLLGVTDIK-- 185

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  I   + N+  D   YH+T   Y  AK+R+ +     +     +        
Sbjct: 186 ----PKVAAIVDIYNNVHLD---YHKTFDNYVEAKLRITQSQDQDDYFIANF---DQKNI 235

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K       +V +     K             +     ++  D      +PG     N 
Sbjct: 236 LEKELDKTKAKVQTFSETDKTADYFIGDEYLESKDDHHIMKISDI----KIPGIHNQQNC 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G D + +   L        R ++V T +         +    +  + + +
Sbjct: 292 LVAIAISKLMGADDSDIQYALSTFTGATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPS 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IH 434
            +        V+   G DR      ++  +        ++       E    +       
Sbjct: 352 FKEPE-----VLIAGGLDRGFMFDSLVP-LFKKHVKSIVL-----YGETKYLLADAARKA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A E+    DV++
Sbjct: 401 GIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|218460179|ref|ZP_03500270.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli Kim 5]
          Length = 336

 Score = 48.0 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 71/233 (30%), Gaps = 10/233 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  +H+D++    A   A  +  E +       +          V +   
Sbjct: 95  LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIED 154

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-----FPLPGEFQVYNAL 316
                              ++    +   V I                P+PG   + NA 
Sbjct: 155 RKIITYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHNISNAT 214

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A  +   +GI S  + + L     V  RF   G    G +I+ DY H    ++ +L+  
Sbjct: 215 AAIAVANRLGISSEDIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLRAA 273

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEK 427
           R    GRII V      R      +  + A     AD   +       ED  +
Sbjct: 274 REACKGRIIAV--HQPHRYSRLASLFEEFAACFNDADSIFLAPVYAAGEDAIE 324


>gi|257867498|ref|ZP_05647151.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC30]
 gi|257873827|ref|ZP_05653480.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC10]
 gi|257801554|gb|EEV30484.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC30]
 gi|257807991|gb|EEV36813.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC10]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 95/279 (34%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    +D ++      TN+   HIDYH ++  Y  AK RL + +   +   I 
Sbjct: 171 MELSSFQL--MGIDTLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTADDYLVIN 228

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +      + +  ++        +         L  +     +  +              +
Sbjct: 229 WNQ-PELEALSAKSKAQIIPFSTKEKVAGAYMLDGILYYKEEVIMA--------ADELGV 279

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + NAL A  +     + +  + + L+    VP R ++V T ++        A   
Sbjct: 280 PGDHNIENALAAIAVGKLCDMPNEAIKQALQTFTGVPHRTQYVITINQVKFFNDSKATN- 338

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
             +      +    + ++I +   G DR      ++  +    A +          E  E
Sbjct: 339 --ILATEMALGGFDNEKLI-LLAGGLDRGNSFDDLVPALKGLKAIVLF-------GETKE 388

Query: 427 KIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+ A     G+       N   A+  A  +    D +++
Sbjct: 389 KLAAAAQAAGVKTIEMTDNVETAVPLAFSLSAAGDTILL 427


>gi|225874901|ref|YP_002756360.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793781|gb|ACO33871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 495

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 111/365 (30%), Gaps = 37/365 (10%)

Query: 118 LAVTGTSGKSSVASFVQQIC------QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           L V+GT GK++  S +  I             SF IG  +     +   +      I   
Sbjct: 110 LVVSGTHGKTTTTSMLAWIYEVASRRHAGFTPSFLIGGVAENFGTSFQYKPGKAFIIEGD 169

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  +    +G                        A   T++  DH D +    A   A  
Sbjct: 170 EYDTAFFDKGPKF---------------MHYFPDALILTHVEFDHADIYLDLDAVKTAFR 214

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           RL   +  +       A       V K                 +  +  V      Q  
Sbjct: 215 RLVNLVPRRGRIVAFDASPHLRDCVQKALC--PVEFYGARPDSAWQVVDLVQQGGIMQWK 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +       +F   L GE   +NA  AA L +  G+  A + E L     V  R E    
Sbjct: 273 VLRYGAPWAEFRMQLAGEHNAFNATAAAALAVGQGVPLAAITEALASFRSVKRRLEVRAQ 332

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGD---RDQGKRPIMGKIAL 407
              G  I  D+AH   ++   L+ +R    G R+  V     +   R+  +  ++  +A 
Sbjct: 333 -VHGVTIIDDFAHHPTAIRETLRALRGAYPGARLWAVLEPRSNTLRRNVFEHELVESLA- 390

Query: 408 DLADIAIVT-----DDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            LAD  ++      +  P +E   PE++ A +                +          D
Sbjct: 391 -LADQIVMAQVFKSEAVPEAERLQPERVIAALEQQGKPAHLIPGVAGIVARIAAEARPGD 449

Query: 461 VLVVA 465
           V+ + 
Sbjct: 450 VVAIL 454


>gi|37521885|ref|NP_925262.1| UDP-N-acetylmuramate--L-alanine ligase [Gloeobacter violaceus PCC
           7421]
 gi|44888167|sp|Q7NI67|MURC_GLOVI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|35212884|dbj|BAC90257.1| UDP-N-acetylmuramate-alanine ligase [Gloeobacter violaceus PCC
           7421]
          Length = 460

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 47/154 (30%), Gaps = 10/154 (6%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +   L +      RFE +G          DYAH  + +   L   R +   R++ V
Sbjct: 296 SFEQIAAGLREFRGAHRRFERIG-ERDDIVFVDDYAHHPSEVRATLAAAR-LQGRRVVAV 353

Query: 388 FGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFI 440
           F      R Q      G    D AD  +VT+     E        E +   I    P   
Sbjct: 354 FQPHRYSRSQLLLDEFGTAFGD-ADAVVVTEIYAAGEANTLGVSGELVARRIAAHHPDVH 412

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHI 474
            +       R     L   D+ +  G G+    I
Sbjct: 413 FEATSDSLKRHLEAHLRPGDLALFLGAGNLNRII 446


>gi|269215879|ref|ZP_06159733.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Slackia exigua
           ATCC 700122]
 gi|269130829|gb|EEZ61905.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Slackia exigua
           ATCC 700122]
          Length = 487

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 125/427 (29%), Gaps = 53/427 (12%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPIL--VVDNTRKFLSLFA-----SRLYG 111
           F    + +GA  +  +  +  +                 +N +   S        +    
Sbjct: 62  FANACMERGARVVFDTFTFDERYDICIASPGISQFSRFYENAQAASSEIVSEVEFAWRES 121

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +     +A+TGT+GK++  +  + I   +GLS+  +G        A              
Sbjct: 122 RSDSRWVAITGTNGKTTTTTLTKLIVDEAGLSAVAVGNIGDTCIEAVAADAADVFVTE-- 179

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                            ASS  L    L      A    N+  DH+ +H T +AY  AK 
Sbjct: 180 -----------------ASSFQLASTVLFA--PDAAVLLNITPDHLYWHMTFEAYVAAKK 220

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV-------GYQGKFIHLKKVCA 284
           R++  L        I A    S+  +K   +   R  S        G             
Sbjct: 221 RVYANLAATAGVLAIDAVTDVSRACVKELASDPARGFSYVPLGCAAGLGSSMKDACGSEN 280

Query: 285 IHNKQQVTISVEGKDFDFLFPLPG------EFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                   + +   D               +    NAL A+   +A+GI+   +   L  
Sbjct: 281 ATFVHDGMLRICLGDEAIDLVSIDELGIKGDHNASNALAASCAALALGIEPETIRRALRA 340

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              +  R E  G  +    +    A   ++      + R    G   +    G D+    
Sbjct: 341 FSPLEHRMEPCGAVAGVACVNDSKATNVDATLKAFASFR----GPSSLFLLGGHDKGTDL 396

Query: 399 RPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
            P++ + A D     +       R  D          G+   + +    +A   A+ +  
Sbjct: 397 SPLV-EAAKDGCKAVVCFGAAGRRFYDAFD-----GSGVRRVLVEH-MEDAFDAALGLAV 449

Query: 458 KQDVLVV 464
             D +V+
Sbjct: 450 PGDTVVL 456


>gi|157960514|ref|YP_001500548.1| UDP-N-acetylmuramate [Shewanella pealeana ATCC 700345]
 gi|157845514|gb|ABV86013.1| UDP-N-acetylmuramate [Shewanella pealeana ATCC 700345]
          Length = 461

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 115/354 (32%), Gaps = 22/354 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK+S +S +  I +  G     +      +         +P  +  A 
Sbjct: 105 PQRWVLAVAGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFVVEAD 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                            S+    + +    +       NL  DH D     +A    +  
Sbjct: 165 EYD--------------SAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQR-QFN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   I  AD    ++V+     +      +    +  +   +    +K +V 
Sbjct: 210 HVIRTVPGEGKIIWPADANSVQQVIDMGCWSEQEQYHLSGNSQGWYAVNLTEDGHKFEVF 269

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E +     + L G+  + NA++A      +G+     +  L +      R E +   
Sbjct: 270 FDGESQ-GILDWQLIGQHNIENAVMAIAAARHVGVKPEAAIAALTQFAPPKRRMELL-DT 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLA 410
             G  +Y D+AH   ++   L  +R  + SG+I V+     +  + G        +L LA
Sbjct: 328 VNGIEVYDDFAHHPTAITTSLNGMRARVGSGKITVILEPRSNTMKSGVHKDTLANSLSLA 387

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             A +        D   I A +           +  E +       N  D ++V
Sbjct: 388 SNAYLYQAGNIDWD---ISAAMSCASIPVEVLYDIDEIVERVSAQANSTDTIIV 438


>gi|239994434|ref|ZP_04714958.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii ATCC
           27126]
          Length = 481

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 141/424 (33%), Gaps = 60/424 (14%)

Query: 67  GAEAIVVSSAYSLQDFSATI--RSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTG 122
           G + IVVSSA + Q+    +      PI+     R+   L+      +G      +AV G
Sbjct: 74  GMDVIVVSSAINEQNPEIIVAREKRIPII-----RRAEMLAELMRFRHG------IAVAG 122

Query: 123 TSGKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           T GK++  S +  I  +     +F IG    ++  ++    +R                 
Sbjct: 123 THGKTTTTSLISTIFAEAEYDPTFVIGGLLNSAGTNARLGKSRYLIAEADE--------- 173

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                       S     H    ++ +    TN+  DH+D +    +        F   L
Sbjct: 174 ------------SDASFLH----LQPMVSVVTNIEADHMDTYGGDFSKVKDTFVDFLSNL 217

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P    AI+  DDA  +E+  R   +        +         +          I  E +
Sbjct: 218 PFYGQAIVCGDDANIQEIRPRIGRSILTYGFESHNDYRAENVSLSF-GKANFTVIRPERE 276

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG-- 356
             D    L G   V NAL A  +    G+D   ++  L     +  RFE +GT +     
Sbjct: 277 PLDITLNLTGNHNVLNALAAIAVATDEGVDDDAIIRALASFGGIGRRFEQLGTFTTSKGE 336

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    +   +   R     + +V+        R +       ++     D  
Sbjct: 337 VCLVDDYGHHPTEVRATIAAARANWPDKRLVMVYQPHRFTRTRDLYEDFVEVLSS-VDAL 395

Query: 414 IVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVA 465
           ++ D    SE P      + +   I   G    +  G+  +A+   +   +   D+++  
Sbjct: 396 LLLDVYAASEQPIEGADSKALCRSIRQRGQIEPVYVGD-KDALPAILANIMQDGDIVMTQ 454

Query: 466 GKGH 469
           G G+
Sbjct: 455 GAGN 458


>gi|213865366|ref|ZP_03387485.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 423

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 95/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 68  DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 124

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 125 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 168

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 169 QFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDTSEWEVW 228

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 229 LDGEKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 287

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 288 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 342

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 343 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV 398


>gi|238797706|ref|ZP_04641201.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
 gi|238718458|gb|EEQ10279.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
          Length = 491

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 227 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTIK-RLDKPLMTVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRG 355
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 286 LNAPGRHNALNAAAAIAVATEEGIEDEDILSALAGFQGTGRRFDFLGNFPLALVNGKEGS 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATVKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         ++LN  D+++V G
Sbjct: 405 LMLDVYAAGEAPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|218708487|ref|YP_002416108.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio splendidus LGP32]
 gi|254766031|sp|B7VJ04|MURC_VIBSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218321506|emb|CAV17458.1| UDP-N-acetylmuramate-alanine ligase [Vibrio splendidus LGP32]
          Length = 486

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 73/431 (16%), Positives = 139/431 (32%), Gaps = 56/431 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFS-----ATIRSNTPILV------VDNTRKF--LSLFASRLY 110
           +++GA   V   A ++ D S       I    P ++          R+   L+      +
Sbjct: 64  VSKGATVYVGHQASNVADASVVVVSTAINEENPEIIAAREARTPIVRRAEMLAELMRFRH 123

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      +AV GT GK++  + V QI   +GL    +     + S   + RL +   +  
Sbjct: 124 G------IAVAGTHGKTTTTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRIL-- 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A +  S     H+    S                   TN+  DH+D +          
Sbjct: 175 -IAEADESDASFLHLQPMVS-----------------IVTNIEADHMDTYGGDFETLKQT 216

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F   LP    A++  DD   +E++ +                 I    V      + 
Sbjct: 217 FIDFLHNLPFYGQAVMCVDDPVVRELIPQVSRQVITYGFSEDADIRIENY-VQEGQQGKF 275

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     + D    +PG     NA  A  +     I    +L+ +        RF+ +G
Sbjct: 276 TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDHLG 335

Query: 351 TNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKI 405
               G     +  DY H    +++ ++  R+  + + +V+        + +        +
Sbjct: 336 EYETGKGVAMLVDDYGHHPTEVDVTIQAARSGWTDKRLVMIFQPHRYSRTRDLYDDFANV 395

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEM-LN 457
                D+ I+ D     E P        +   I   G    I   +   A+ +A+   + 
Sbjct: 396 LEQ-VDVLILLDVYSAGEKPIAGADGRSLSRTIRGRGKIDPIFVADIN-ALPSALANVIQ 453

Query: 458 KQDVLVVAGKG 468
             D+++  G G
Sbjct: 454 GGDLVLTQGAG 464


>gi|114798168|ref|YP_761703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hyphomonas
           neptunium ATCC 15444]
 gi|114738342|gb|ABI76467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 471

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 126/382 (32%), Gaps = 47/382 (12%)

Query: 89  NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148
             P++      +  +     L  +    ++AVTGT+GKS+  + +  I +++G  +   G
Sbjct: 93  GVPVI---GDMELFARAVQALPERARPKVVAVTGTNGKSTTTALIGHILKQAGRDARVGG 149

Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS 208
              T               + LA      +        +E SS+ LD   +  +      
Sbjct: 150 NIGTG-------------VLDLA------ALHSNAIYVLELSSYQLDL--VKSLHCDVSV 188

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
           F NL  DH+D H     Y  AKMR+F+    K     +   D    + +    +A     
Sbjct: 189 FMNLSPDHLDRHGGMDGYQAAKMRIFQNQTDKN--VAVIGFDDIYTQSIAIGLSAKGPQK 246

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
            V     +   K + A+  +     S +       D    L G     NA  A   C A+
Sbjct: 247 VVQISSTYTLGKGISAVDGRLYDNQSGKAEFVGKLDECPALIGRHNHQNAAAAYAACRAL 306

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
           G+D A ++  L     +  R E VG       I    A  + + E  L++ + I      
Sbjct: 307 GLDPATIMAGLRTFPGLAHRMEAVGELDGIRFINDSKATNAQAAEQALRSFKNIYW---- 362

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
                G  + +G  P+           A +          E   A  ++G       G+ 
Sbjct: 363 --IAGGVPKAEGIAPL--ASLFPNVTKAYLIGQ------AEDAFAATLNGKVPSQVCGSL 412

Query: 446 IEAIRTAIEMLN----KQDVLV 463
             A+  A            V++
Sbjct: 413 DRAVEAAYRDAKAAGEPGAVIL 434


>gi|90580815|ref|ZP_01236618.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
 gi|90438083|gb|EAS63271.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
          Length = 462

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 103/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ AS +  I +  G    F +G        +     +    +   
Sbjct: 113 HDRWVMAVSGTHGKTTTASMLAWILEDCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 172

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 173 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLKAIQ---- 213

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P+          + +      GC        G      +          
Sbjct: 214 -RQFHHLVRTVPSNGRILAPKGVKNIDETLEMGCWSELEYIGGDGHWRAEKHHADGSVFD 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       +PL G+  V NAL+A      +G+   L  E L K      R E  G 
Sbjct: 273 VYLDSDIVGTVHWPLVGDHNVNNALMAIAAARHVGVKPELACEALAKFINTKRRLELKG- 331

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   RI+ V     +  + G        +L  
Sbjct: 332 EVSGVTVYDDFAHHPTAIELTLGGLRAKVNQSRILAVLEPRSNTMKLGVHKDDLAPSLHA 391

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
           AD             P  I     EI            +  + +          D ++V
Sbjct: 392 ADEVFFFQ-------PPNIPWSVEEIAEQCSQPAYCSADLDDLVNNIANKAQPGDTILV 443


>gi|258545064|ref|ZP_05705298.1| FolC bifunctional protein [Cardiobacterium hominis ATCC 15826]
 gi|258519684|gb|EEV88543.1| FolC bifunctional protein [Cardiobacterium hominis ATCC 15826]
          Length = 417

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGKIA 406
            +       R   D AH ++S E++   +  +   GR I + G   D+D      + +  
Sbjct: 284 RLMQIPGSPRWLFDVAHNADSAEVLAAWLHDMPRHGRFIALCGMLRDKD---HHAIYRHL 340

Query: 407 LDLADIAIVTD-DNPRSEDPEKIRAEII-HGI--PGFIEKGNRIEAIRTAIEMLNKQDVL 462
               D  I+     PR  D + + A     GI     +   +   A   A  +   +D +
Sbjct: 341 APEIDQWILAGLGGPRGTDVQTLAAHAREAGIATEKLLSCDDIPAAYHHARTLARPEDTV 400

Query: 463 VVAG 466
           VV G
Sbjct: 401 VVFG 404


>gi|299822723|ref|ZP_07054609.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria grayi DSM 20601]
 gi|299816252|gb|EFI83490.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria grayi DSM 20601]
          Length = 440

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 118/362 (32%), Gaps = 48/362 (13%)

Query: 59  FIPQAIAQGAEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F  + I +G + I+  +A+    ++          ++      KFL  F           
Sbjct: 53  FSAENIQKG-QTIIAGNAFPDTHEEIVKAKELGLTVIR---YHKFLGQFIENYTS----- 103

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TG+ GK+S    +  + +    +S+ IG  +   +   +        +   +   +
Sbjct: 104 -IAITGSHGKTSTTGLLSHVLEGIKPTSYLIGDGTGSGTKGAEY-----FALEACEYQRH 157

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
             +   T+  +                      TN+  DH DY ++    F+A       
Sbjct: 158 FLAYSPTYAIM----------------------TNIDWDHPDYFKSVDDVFDAFQT---- 191

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +  +   A+I   D     + +   +        G   +FI    +             +
Sbjct: 192 MGSQVKKAVIALGDDEQ--LRRLDLDIPIVYFGFGENNEFIAKNVIKKTTGTVFDAYHFD 249

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            K   F  P  G+  V NAL    L    G+    V+E L+    V  RF          
Sbjct: 250 QKLGTFEIPTYGDHNVMNALSVIALTDYEGLPMKSVIEGLKTFEGVKRRFSIS--EKGNQ 307

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIV 415
            +  DYAH  + +   +   R     + +V         + +  + G   +L+LAD   +
Sbjct: 308 VLVDDYAHHPSEIRATINAARQKYPDKKVVAVFQPHTFTRTQTFLQGFAESLNLADEVYL 367

Query: 416 TD 417
            D
Sbjct: 368 CD 369


>gi|300768844|ref|ZP_07078738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300493577|gb|EFK28751.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 459

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 89/271 (32%), Gaps = 20/271 (7%)

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +  +       TN+   H+DYH +++ Y  AKMR+       +   I +  + + +
Sbjct: 174 MLCGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQ 233

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +              +          A     ++    E         +PG+  V N
Sbjct: 234 LSKQSQATVVPFSRQANTKDG--------AYEEAGKLYFKDEYIMDAADIRIPGDHNVEN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  +     + +A +++ L+    V  R ++V T           A    S EM LK
Sbjct: 286 ALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRTQYVETYQDRQFYNDSKATNLVSTEMALK 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-I 433
                     +++   G DR      +   +   +  + +        E  EK+     +
Sbjct: 346 GFDQ-----PVILLAGGLDRGNTFEKLAPALKAHVKTLIVF------GETAEKMADAGRL 394

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI       N   A+  A +     D++++
Sbjct: 395 AGIQDIEFTDNCETAVPIAWQHSQAGDIIML 425


>gi|119026118|ref|YP_909963.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|166222958|sp|A1A2E8|MURC_BIFAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118765702|dbj|BAF39881.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 521

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 57/201 (28%), Gaps = 17/201 (8%)

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
               +     I  E +       +PG     NA  A      +G+D       +      
Sbjct: 301 HFTLHIPGGLIGEEERRIAVTLTVPGIHNARNASAAIIAAALLGMDVERASAAVTSFLGA 360

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRP 400
             RF+  GT S+   +  DYAH    +  +L   R       I V        R +    
Sbjct: 361 ARRFQVRGTVSQ-VTVVDDYAHHPTEIAALLDAARRRYPQSKIRVIFQPHLFSRTRFFSS 419

Query: 401 IMGKIALDLADIAIVTDDNPRSED--------PEKIRAEIIH-----GIPGFIEKGNRIE 447
              +     AD  IVT   P  E         P  I  E +               +   
Sbjct: 420 EFAQALAK-ADDVIVTGIFPAREKQEDFPDVTPATIVDEALKLEHEPAKDWIRGVEDMHT 478

Query: 448 AIRTAIEMLNKQDVLVVAGKG 468
           A +  +   +  DV+   G G
Sbjct: 479 AAQMMVMRAHHGDVIFTVGAG 499


>gi|332992507|gb|AEF02562.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Alteromonas sp. SN2]
          Length = 439

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/398 (13%), Positives = 115/398 (28%), Gaps = 37/398 (9%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V +    +              ++ V GT+GK +    ++Q     G +         +
Sbjct: 36  RVKSVANAMG------IHLKDALLITVAGTNGKGTTCRLLEQAMLAKGKTVAVFSSPHLV 89

Query: 154 SSFAQDNRLT-------TPSPIYL--------------AKALSYLSSQGVTHVSVEASSH 192
           S   +                  L                 L+ +       V V     
Sbjct: 90  SYCERVRLNGELAEEGAFCRAFELIEKARGDITLTYFEFGTLAAMKMMQDWGVDVAVLEV 149

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
           GL   RLD   ++      +    +D+         A  R    ++ K   A+I      
Sbjct: 150 GLG-GRLDAANILDPDLAIITTIDLDHQDWLGDTREAIAREKAGIMRKNGKAVIGELLPP 208

Query: 253 SK-EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           S    +    +   R     +              +  +              P P   Q
Sbjct: 209 SSLRDVVSELDVDARWAQQDFFIVENTAPNNSLSASTSRTWQWKGKHTEFTQLPYPHIPQ 268

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
              +   A L +   +     ++H+     +PGR +     S+   + VD AH   + + 
Sbjct: 269 QNVSTALAALELLNLLPDEAAIKHIIANTRLPGRQQE---ISQNPLVVVDVAHNPQATKA 325

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           + + ++   + +I VV G    +D+     +  ++   A   + +   PR  D + +   
Sbjct: 326 MREWLKRYPANKIRVVAGML--KDKSIVETLAPLSSLNAQWYLASTSGPRGCDADVLAGA 383

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++             +   A + A     + ++++V G
Sbjct: 384 LLDAQLDKSYIKTFSDVTNAYKAARNDYQEGELILVFG 421


>gi|313159032|gb|EFR58407.1| bifunctional protein FolC [Alistipes sp. HGB5]
          Length = 429

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 109/387 (28%), Gaps = 31/387 (8%)

Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ------- 158
           R  G    N   + V GT+GK SV+  +  + Q++G  +             +       
Sbjct: 37  RHIGNPQRNFFTIHVAGTNGKGSVSHIIASVLQQAGYRTGLFTSPHLQDFRERIRVDGEM 96

Query: 159 ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLI 205
                     D        + L+      +         +     ++     RLD   +I
Sbjct: 97  IPKQKVVNFVDKHHGKMVELELSFFEMTAALAFDYFAQSDVEVAVIETGLGGRLDATNII 156

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               + +    +D+                 ++ K  P +I   D    EV+++   A  
Sbjct: 157 VPLVSVITNVGLDHTALLGDTLPKIAAEKAGIIKKSIPVVIGESDPRYNEVIEQTAAANK 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +    Q                 +  + + ++F+    L G +Q  N + AA     +
Sbjct: 217 SKVIYAEQEFSCEPCPCGTDRQHFCMHRTRDNRNFEVDLDLGGNYQRRNMVTAAATVDFL 276

Query: 326 GIDSALVLEHLEKLHVVPG------RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
             ++ L +     L                           D  H  + +  + + ++  
Sbjct: 277 HEETPLTISRRAFLEGARDTAANTSLMGRWQKLGEQPLTVCDTGHNPHGIAYVARQLKAT 336

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
              ++  V G   D+D      +  +    A          R+    ++ A+        
Sbjct: 337 PHKQLYCVIGFVRDKDLAH---ILPLLPHDAHYIFTQAKTERAFSAAELTAKAAIYGLHG 393

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   A+  A E+    D++ + G
Sbjct: 394 ETVTEVPAAVARAKELAGADDMIFIGG 420


>gi|145631200|ref|ZP_01786974.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R3021]
 gi|144983298|gb|EDJ90789.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R3021]
          Length = 453

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 76/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G    G  +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNGITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDEIAPALGRADAVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVTEAQPTDHILV 433


>gi|218680673|ref|ZP_03528570.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli CIAT 894]
          Length = 168

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 12/139 (8%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
              V  RF   G    G +I+ DY H    ++ +LK  R    GRII V      R    
Sbjct: 12  FGGVKRRFTLTG-EWNGVQIFDDYGHHPVEIKAVLKAAREACKGRIIAV--HQPHRYSRL 68

Query: 399 RPIMGKIALDL--ADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAI- 449
             +  + A     AD   +       EDP +      + + I  G           E + 
Sbjct: 69  ASLFEEFAACFNDADSIFLAPVYAAGEDPIEGVDSTSLVSRIKSGGHRDARFLTSAELLP 128

Query: 450 RTAIEMLNKQDVLVVAGKG 468
           +   E+    D +V+ G G
Sbjct: 129 QMVAEVAKPGDFVVLLGAG 147


>gi|184201130|ref|YP_001855337.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila
           DC2201]
 gi|183581360|dbj|BAG29831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kocuria rhizophila
           DC2201]
          Length = 513

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 132/385 (34%), Gaps = 51/385 (13%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+   +R  G+     L +TGT+GK++       I Q +GL +  +G   T         
Sbjct: 130 LAWRVNRREGRKSPEWLCITGTNGKTTTVGMTASILQAAGLKAVAVGNVGT------PIL 183

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                P+                ++VE SS  L    +  +  +A +  N+  DH+D+H 
Sbjct: 184 DALRDPVE------------YDVLAVELSSFQLHW--MHSVSPLASAVLNVAEDHVDWHG 229

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           + + Y          +      A +Y  D    E +  A +      +VG+  +   L  
Sbjct: 230 SYENYRA----DKSRVYENTRVACVYNADQPGAEELVEAADVVEGCRAVGFTTQHPGLSM 285

Query: 282 VCAIHN--------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
           V  + +          +   + E        P+P    V NAL AA L  A G++   V 
Sbjct: 286 VGVVEDLLVDRAFVADRARTAAELGSVSDTGPIPTRHGVANALAAAALARAAGVEPEAVR 345

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L   H    R + V        I    A   ++ E  L           +V    G  
Sbjct: 346 DGLRAHHPGDHRIQLVAETDGVRWINDSKATNPHAAEASLSAFDP------VVWIAGGLS 399

Query: 394 RDQGKRPIMGKIALDL-ADIAIVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGN--- 444
           +      ++ + A  L A + I TDD    +   ++  ++       G       G+   
Sbjct: 400 KGVTYDELVARHAQRLRAVVVIGTDDAALLDALARLAPDVPVLHATPGAGPDSAAGDPAD 459

Query: 445 ----RIEAIRTAIEMLNKQDVLVVA 465
                  A+R A E    QD +++A
Sbjct: 460 GQEAMRRAVRLAHEHAAAQDTVLMA 484


>gi|157826844|ref|YP_001495908.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
 gi|157802148|gb|ABV78871.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           bellii OSU 85-389]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 113/389 (29%), Gaps = 45/389 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  N  I +  +   F              N+LAVTGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVKIAKNFNIPITSDIDLF-------FEKSKGLNLLAVTGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                             +        +E S
Sbjct: 120 ALISHILSDNGLDYPIAGNIGVPV---------------------LQAKASKGGYVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD  +            N+  DH+D H+  + Y  AK ++F+ +       I   +D
Sbjct: 159 SFQLDLVKTFA--AKIAVLLNITPDHLDRHENMEGYITAKSKIFDRMDKDSYGIINIDND 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              +           +++             +            +  K       L G  
Sbjct: 217 YCHEIFTNLQQKHHIKLIPFSVTKILEKGISIVNDIITDNFFEHISFK-LISNKSLQGIH 275

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N   +  +   IG++   ++E +     +P R +++G            A       
Sbjct: 276 NSENIAASYAVARIIGLEPVKIIESISSFQGLPHRMQYLGNIDDINFYNDSKATN---AI 332

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             +++I+ + +   +          +  +P   KI                    +++ A
Sbjct: 333 AAVQSIKALDNIYWLAGGIAKEGGIEEIKPYFSKIKKAYF-----------YGQAKEMFA 381

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
                I  F+   +  +A   A +   K 
Sbjct: 382 NTAKDIIDFVICDDLKQAFELAYKDACKD 410


>gi|50086473|ref|YP_047983.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter sp. ADP1]
 gi|59798249|sp|Q6F704|MURC_ACIAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49532449|emb|CAG70161.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ADP1]
          Length = 482

 Score = 47.6 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 76/229 (33%), Gaps = 7/229 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D +             F   LP    A++  DD   +E+M R  
Sbjct: 188 LQPMAAIITNVDADHMDTYGGSFDKLKDTFVEFIHRLPFYGLAVVCGDDHNVREIMPRFG 247

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                            +  V          +  + +        PG   + NAL A G+
Sbjct: 248 RPTL-TYGFNEDNDIRAVDVVQEGMQSHFTVLRKDREPLRLTVNQPGLHNILNALAAIGV 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRT 378
               G+  A +   LE    V  RF+  G    G    ++  DY H    +E  +K  R 
Sbjct: 307 ATDEGVSDAAIARALEGFSGVGRRFQVQGEFELGEGSVKLVDDYGHHPKEVEATIKAARQ 366

Query: 379 ITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP 425
               R +V+        + +       ++     D  ++ +  P  E P
Sbjct: 367 SHPDRRLVMMFQPHRFSRTRDCFDDFVEVLSQ-VDQLLLLEVYPAGEKP 414


>gi|34499800|ref|NP_904015.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Chromobacterium violaceum ATCC 12472]
 gi|62900566|sp|Q7NPZ7|MURD_CHRVO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|34105650|gb|AAQ62004.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chromobacterium
           violaceum ATCC 12472]
          Length = 453

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 126/417 (30%), Gaps = 44/417 (10%)

Query: 48  AIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS 107
            + G +     F   A   GAE +VVS    L + +          VV +      + A 
Sbjct: 49  CLPGVEVMVGAF-DDATFAGAELLVVSPGVPLANPAIAAFRRAGGEVVGDIE----ILAR 103

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
            + G     ++A+TG++GKS+V S V  +C+ +GL +   G                   
Sbjct: 104 AIQGD-GSKVIAITGSNGKSTVTSLVGHLCEAAGLDTVVAGNIGL--------------A 148

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           +  A      S +      +E SS  L+      +   A +  N+  DH+D +     Y 
Sbjct: 149 VLEALLAREQSGKRPDVWVLELSSFQLES--TFSLAADAATVLNISEDHLDRYADLLDYA 206

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           +AK R+F           +   D      M R  +        G     +       +  
Sbjct: 207 HAKTRVFNGKG-----VQVLNKDDALVRAMVRPGHPVKWFSLNGAADYALARNGGYWLKV 261

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
             +            L                GL          +L+ L+    +  R E
Sbjct: 262 DGEKVFDCADMQLQGLHNAANALAALGLCQGIGL------PLEKLLDGLKTFRGLAHRVE 315

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V        I         + E  L  +      R +V+   G  + Q   P+      
Sbjct: 316 LVDEFDGIAFIDDSKGTNVGATEAALNGMT-----RQVVLIAGGDGKGQDFAPLKP-ACQ 369

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +A   ++        D  +I A +              EA R A  +    DV+++
Sbjct: 370 RIARAVLLI-----GRDAGRIEAALEDSGLALERCDTLEEATRRAAALARPGDVVLL 421


>gi|28378801|ref|NP_785693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum WCFS1]
 gi|308180998|ref|YP_003925126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258037|sp|Q88V80|MURD_LACPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28271638|emb|CAD64544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           plantarum WCFS1]
 gi|308046489|gb|ADN99032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 459

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 89/271 (32%), Gaps = 20/271 (7%)

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +  +       TN+   H+DYH +++ Y  AKMR+       +   I +  + + +
Sbjct: 174 MLCGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQ 233

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +              +          A     ++    E         +PG+  V N
Sbjct: 234 LSKQSQATVVPFSRQANTKDG--------AYEEAGKLYFKDEYIMDAADIRIPGDHNVEN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  +     + +A +++ L+    V  R ++V T           A    S EM LK
Sbjct: 286 ALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRTQYVETYQDRQFYNDSKATNLVSTEMALK 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-I 433
                     +++   G DR      +   +   +  + +        E  EK+     +
Sbjct: 346 GFDQ-----PVILLAGGLDRGNTFEKLAPALKAHVKTLIVF------GETAEKMADAGRL 394

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI       N   A+  A +     D++++
Sbjct: 395 AGIQDIEFTDNCETAVPIAWQHSQAGDIIML 425


>gi|116513831|ref|YP_812737.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275399|sp|Q04B73|MURD_LACDB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116093146|gb|ABJ58299.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 460

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 117/398 (29%), Gaps = 62/398 (15%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---- 131
            Y     +       PI+         S              + VTG++GK++       
Sbjct: 84  PYENPMVAKASEKGVPIITEPEVALSASE----------SPYVCVTGSNGKTTTVMLTQQ 133

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +    Q+ G  ++ +G          +  L    P  L              + VE SS
Sbjct: 134 IMDHYLQKQGHHAYAVGNIG---WPISEVVLNQAGPDDL--------------LVVEMSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T   Y +AK+ +       +     +    
Sbjct: 177 FQL-MGVTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKTSDYFLANFDQKD 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 K                 F   +       ++ + I+           LPG   
Sbjct: 236 ILAREEKATKAKILTFSENDPVADFYIGQDYLMHGEEKMMKIAD--------IKLPGIHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA G+   +G     +   L        R ++V T           +    +  +
Sbjct: 288 LQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVTTLDGVKVYNDSKSTNIEAATV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD------IAIVTDDNPRSEDP 425
            +++ +        V+   G DR        G +   L D       AIVT    R    
Sbjct: 348 AIQSFKQPE-----VLLAGGLDR--------GFVFDSLVDLFKKHVKAIVTYGETRYLLA 394

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 395 DAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|295692688|ref|YP_003601298.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Lactobacillus
           crispatus ST1]
 gi|295030794|emb|CBL50273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus ST1]
          Length = 459

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 113/393 (28%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y           N PI+        LS              + VTG++GK++     Q+
Sbjct: 84  PYENPMVQKAEELNIPIITEPEV--ALS--------CSDAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I           ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKSAHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +      A+  
Sbjct: 176 FQL-LGVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQNSNDYFI---ANYD 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K    +  ++ +                   Q   I            LPG   
Sbjct: 232 QKDILAKEKEVSPAKMQTFSETDHNADYFIGDEYLESQNEKIMK-----ISDIKLPGIHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 287 LQNSLVAIAISKIMGADNDDIAAVLSTFTGAKHRLQYVTTLDGCKVYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +        ++       E    +   
Sbjct: 347 AIPSFKQPE-----VLIAGGLDRGFTFDDLVP-LFKKHVKSIVL-----YGETRYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E++   DVL+
Sbjct: 396 ARKAGIKDIVIVNTLQEAVPRAWELVEPGDVLL 428


>gi|169797792|ref|YP_001715585.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AYE]
 gi|213155410|ref|YP_002317455.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB0057]
 gi|215485142|ref|YP_002327383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB307-0294]
 gi|301345508|ref|ZP_07226249.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB056]
 gi|301512897|ref|ZP_07238134.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB058]
 gi|169150719|emb|CAM88629.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AYE]
 gi|213054570|gb|ACJ39472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB0057]
 gi|213988815|gb|ACJ59114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB307-0294]
          Length = 457

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 88/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G  + G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGMIN-GIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIEAATNHAQVSRSLDEIIERIVNEAGEGDAVVI 435


>gi|16763236|ref|NP_458853.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144715|ref|NP_808057.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213584532|ref|ZP_03366358.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213649722|ref|ZP_03379775.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289829256|ref|ZP_06546868.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25293612|pir||AC1056 murein peptide ligase (EC 6.3.2.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505544|emb|CAD06896.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140354|gb|AAO71917.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 457

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 95/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 203 QFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDTSEWEVW 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV 432


>gi|104774360|ref|YP_619340.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514455|ref|YP_813361.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122274813|sp|Q049E9|MURC_LACDB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123251855|sp|Q1G9A0|MURC_LACDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|103423441|emb|CAI98322.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093770|gb|ABJ58923.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126159|gb|ADY85489.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 439

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 81/275 (29%), Gaps = 22/275 (8%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + +  Y +A     ++                 + + K  
Sbjct: 165 AYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQTKKGLFVWG------DDERLQKIH 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                +               V       +  +   G+D  +F   L G+  V NA    
Sbjct: 219 PKTAKKYTYGLKDSDDFQAFDVVKTTEGAKFHVRANGEDLGEFTIHLFGDHNVMNATAVI 278

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
            +    GID  +V + L K      RF           +  DYAH    L   ++  R  
Sbjct: 279 AIAFTEGIDLDVVRKGLVKYTGAKRRFSEKDFG--DTVVIDDYAHHPTELRATIQAARQK 336

Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHG 435
               +++ +F      R +       +I     D A +T       E    I   +I   
Sbjct: 337 FPDRKLVTIFQPHTYSRTKEFEEEYVEIL-KGVDKAFLTPIYGSAREAAGDIKSEDIASQ 395

Query: 436 IPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           IPG       N  +       +  K D +V  G G
Sbjct: 396 IPGAEVIDFDNLKD------LLAYKGDCIVFMGAG 424


>gi|254557006|ref|YP_003063423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
 gi|254045933|gb|ACT62726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
          Length = 459

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 89/271 (32%), Gaps = 20/271 (7%)

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
               +  +       TN+   H+DYH +++ Y  AKMR+       +   I +  + + +
Sbjct: 174 MLCGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRITMNQTANDYLVINWDSEEWRQ 233

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
              +              +          A     ++    E         +PG+  V N
Sbjct: 234 LSKQSQATVVPFSRQANTKDG--------AYEEAGKLYFKDEYIMDAADIRIPGDHNVEN 285

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL A  +     + +A +++ L+    V  R ++V T           A    S EM LK
Sbjct: 286 ALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRTQYVETYQDRQFYNDSKATNLVSTEMALK 345

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-I 433
                     +++   G DR      +   +   +  + +        E  EK+     +
Sbjct: 346 GFDQ-----PVILLAGGLDRGNTFEKLAPALKAHVKTLIVF------GETAEKMADAGRL 394

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            GI       N   A+  A +     D++++
Sbjct: 395 AGIQDIEFTDNCETAVPIAWQHSQAGDIIML 425


>gi|191638701|ref|YP_001987867.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BL23]
 gi|229620043|sp|B3WF58|MURC_LACCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190713003|emb|CAQ67009.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Lactobacillus casei BL23]
 gi|327382742|gb|AEA54218.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W]
 gi|327385929|gb|AEA57403.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II]
          Length = 436

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 79/247 (31%), Gaps = 13/247 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY+   +  ++A      +    +   + + DD + +++  + 
Sbjct: 162 AYHPDYMIMTNIDFDHPDYYTGFEDVYDAFETEANQ---VKKAIVAWGDDPWLRKLKAKV 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                    +  +  F                   +     F  PL GE  V NAL    
Sbjct: 219 ---PVYYYGISDRDDFRARNVDRDTKGSSFDAYFHDQLIGHFFVPLFGEHSVLNALAVVA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D+ L+   L     V  RF     + +   I  DYAH  N ++  L   R   
Sbjct: 276 VAHMEKLDAKLIARELGNFSGVKRRF--AEKDLKDMIIVDDYAHHPNEIKATLDAARQKY 333

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-AEIIHGI 436
             + I+         R Q   P   ++    AD   +T   +   E   KIR  +I   I
Sbjct: 334 PDKAIIAVFQPHTFSRTQAYEPQYVQVLSQ-ADQTFLTPIFSSAREKTGKIRSEDITAQI 392

Query: 437 PGFIEKG 443
            G     
Sbjct: 393 KGAAVIH 399


>gi|88858803|ref|ZP_01133444.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
 gi|88819029|gb|EAR28843.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas tunicata D2]
          Length = 478

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 93/280 (33%), Gaps = 13/280 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D +Q            F   LP    A++  DD   KE++ R 
Sbjct: 178 HLQPMVSVITNIEADHMDTYQGDFENMKDTYIEFIHNLPFYGLAVVCCDDEVVKELIPRF 237

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                           +    V + +  Q V    +G   +    +PG     NA  A  
Sbjct: 238 GRKFLTYGQSSQADYRMSDF-VQSGNTSQFVVTDKQGHSLNVKLNMPGLHNALNATAAIA 296

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGT---NSRGGRIYVDYAHTSNSLEMILKNIR 377
           +    GI    ++  L K   +  RFE  G          +  DY H  + +   +K  R
Sbjct: 297 VAKDEGIADDAIIRALAKFEGIGRRFEHYGNFATERGDIMLVDDYGHHPSEVAATIKAAR 356

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSE------DPEKIR 429
                +  +V      R    R +  +    LA  D+ ++ +  P  E      D + + 
Sbjct: 357 QGWPDKR-LVMAYQPHRYTRTRDLYEEFVQVLAEVDLLLLLEVYPAGEQAIAGADSKSLC 415

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +       +      E      E+L   D+++  G G+
Sbjct: 416 RSLRQRGKEPVYISGPSELTSVLSEVLQGNDLVLTQGAGN 455


>gi|116495192|ref|YP_806926.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei ATCC
           334]
 gi|227534790|ref|ZP_03964839.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239632074|ref|ZP_04675105.1| UDP-N-acetylmuramate-L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|122263391|sp|Q037Y8|MURC_LACC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116105342|gb|ABJ70484.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei ATCC
           334]
 gi|227187546|gb|EEI67613.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|239526539|gb|EEQ65540.1| UDP-N-acetylmuramate-L-alanine ligase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 436

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 78/247 (31%), Gaps = 13/247 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY+   +  ++A      +    +   + + DD + +++  + 
Sbjct: 162 AYHPDYMIMTNIDFDHPDYYTGFEDVYDAFETEANQ---VKKAIVAWGDDPWLRKLKAKV 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                 +            +               +     F  PL GE  V NAL    
Sbjct: 219 PVYYYGISDRDDFQARNVDRDTKGSSFDAYF---HDQLIGHFFVPLFGEHSVLNALAVVA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D+ L+   L     V  RF     + +   I  DYAH  N ++  L   R   
Sbjct: 276 VAHMEKLDAKLIARELGNFSGVKRRF--AEKDLKDMIIVDDYAHHPNEIKATLDAARQKY 333

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-AEIIHGI 436
             + I+         R Q   P   ++    AD   +T   +   E   KIR  +I   I
Sbjct: 334 PDKAIIAVFQPHTFSRTQAYEPQYVQVLSQ-ADQTFLTPIFSSAREKTGKIRSEDITAQI 392

Query: 437 PGFIEKG 443
            G     
Sbjct: 393 KGAAVIH 399


>gi|156975367|ref|YP_001446274.1| folylpolyglutamate synthase [Vibrio harveyi ATCC BAA-1116]
 gi|156526961|gb|ABU72047.1| hypothetical protein VIBHAR_03098 [Vibrio harveyi ATCC BAA-1116]
          Length = 406

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 106/373 (28%), Gaps = 33/373 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +       +     
Sbjct: 32  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRINGVDAEDSKH 91

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    +S+       +   L  +++      ++    +       A      
Sbjct: 92  CEAFDYVEQQRGDISLSL----FEFGTLAALRIFQVEKVDVVLLEVGLGGRLDATNVVDH 147

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 148 DVSVITSLAIDHVDWLGDDINVIGFEKAGIYRSGKPAICGQPTPPATVAAHADDIQAEFF 207

Query: 288 KQQVTISVEGKDFDFLF------------PLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           +  +    +  +  + +            P         AL+A G       D  +V   
Sbjct: 208 QVGIQFDYQLTEKGWKWTSGAFALEDLPVPSLPLPNAATALMALGASELQITDINIVNGL 267

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDR 394
                 + GR + +     G  I +D AH  +S E  + K  R      I VV     D+
Sbjct: 268 NNA--RLAGRMQVL---QTGPEIVLDVAHNPHSAEYLVEKVKRQYADKNIHVVVAMLHDK 322

Query: 395 DQGKRPI-MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D       +  IA      A +T   PR+   +++   +  G   F       EA  +A 
Sbjct: 323 DIKATIEALTPIATQWY-PASLT--GPRAATADELCQYLPQGQVQFQTPV---EAFESAK 376

Query: 454 EMLNKQDVLVVAG 466
               + DV++V G
Sbjct: 377 THAAQDDVILVVG 389


>gi|303258238|ref|ZP_07344245.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderiales
           bacterium 1_1_47]
 gi|302858991|gb|EFL82075.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderiales
           bacterium 1_1_47]
          Length = 477

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 87/291 (29%), Gaps = 14/291 (4%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  L+    + +   + +  N+  DHID+H + + Y  AK ++F
Sbjct: 165 HRQVGTLPDFWVLELSSFQLET--TESLHCDSAALLNITEDHIDWHGSMEKYAAAKRKIF 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +            ++ V     +              I         +    + S
Sbjct: 223 SADTVRVLNREDPGSMLSAEGVPSDLVHTFGSDAPKKIGDFGISDVGALVWLSGCIASAS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NAL A  L +A+GI    +L  L +    P R + +     
Sbjct: 283 PELLIPMNALRIRGLHNAMNALAATALTLAVGIPLDSILRTLREYKGEPHRVQLILRA-- 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413
                +DY   S    +          G   VV   GGD + Q   P+   I        
Sbjct: 341 ---SDIDYVDDSKGTNVGAVAAALAGFGPKKVVLILGGDGKGQDFAPLKAPIETHAKGAV 397

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  D P  E        +              EA+R A  M    D +++
Sbjct: 398 FIGRDAPLIEKEVDYPGLLKAHAK------TMAEAVREARAMAKPGDTILL 442


>gi|118586734|ref|ZP_01544171.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163]
 gi|118432822|gb|EAV39551.1| UDP-N-acetylmuramate-alanine ligase [Oenococcus oeni ATCC BAA-1163]
          Length = 435

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 79/272 (29%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH DY+++     +A     +     +     Y +D   K++  +        
Sbjct: 167 IITNIDWDHPDYYKSLDDVKSAFSEFADH---VKKIIFAYGEDPEIKKIKPKTARILSYG 223

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                     ++ K              +  DF       G+  + +   A  +   +G 
Sbjct: 224 FEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATIE--GDHGILDTTAAIAVADYLGF 281

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386
               + + L        RF           I  DYAH    ++  +   R    + R++ 
Sbjct: 282 SVDQIQKGLLTYQGAKRRFNISQVA--DLTIVDDYAHHPTEIKATIDAARQKFPNKRLVA 339

Query: 387 VFG-CGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKG 443
           VF      R    +      AL  AD   +T    + R +       +I+  +P      
Sbjct: 340 VFQPHTYTRVNAFKDEYVD-ALKSADKVYITPIFGSLREKAGNAKSEDILDKLPNAGAII 398

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGH-ETVHI 474
           +   A            VLV  G G  E    
Sbjct: 399 SESNAYDKL--SAEHGSVLVFMGAGDIEKYED 428


>gi|163801905|ref|ZP_02195802.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio sp.
           AND4]
 gi|159174413|gb|EDP59217.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio sp.
           AND4]
          Length = 420

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 100/368 (27%), Gaps = 23/368 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +       +   L 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALIEAILLDAGYSVGVYSSPHLIRYNERVRINGVDADDRLH 105

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                   Q    +S+       +   L  +++       +    +       A      
Sbjct: 106 CEAFDYIEQQRGDISLSL----FEFGTLAALRIFQVEKVEVVLLEVGLGGRLDATNVVDH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 162 DVSVITSLAIDHVDWLGDDINVIGFEKAGIYRSGKPAICGQPTPPATVAAHADDINAEFY 221

Query: 288 KQQVTISVEGKDFDFLFP-------LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +  +    +  +  + +              +     A  L      +  +   ++    
Sbjct: 222 QVGIQFDYQLMEKGWKWNSGAFALEDLPIPSLPLPNAATALMALGVSELQITDINIVNGL 281

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKR 399
                   +     G  I +D AH  +S E +++ ++       I VV     D+D    
Sbjct: 282 SRARLAGRMQILQTGPEIVLDVAHNPHSAEYLVERVKCQYADKNIHVVVAMLHDKDIKAT 341

Query: 400 PI-MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
              +  I       A +T   PR+   + +   +  G+  F        A  +A     +
Sbjct: 342 IETLAPITTKWY-PASLT--GPRAATADDLCQHLPDGLVQFQTPV---AAFESAKNHATQ 395

Query: 459 QDVLVVAG 466
            DV++V G
Sbjct: 396 DDVILVVG 403


>gi|19704349|ref|NP_603911.1| dihydrofolate synthase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19714597|gb|AAL95210.1| Folylpolyglutamate synthase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 415

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 110/360 (30%), Gaps = 25/360 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPS-- 166
           +    ++ +TGT+GK SV++ V++I   +G                    +++  +    
Sbjct: 40  EKSYKVIHITGTNGKGSVSTTVERILLDAGYKIGKYTSPHILKFNERIIFNDKYISDEDV 99

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I      +         +         D   L+         TN+  D+I
Sbjct: 100 AKYYERVKKIIDEHNIQATFFEVTTAMMFDYFKDMKADYVILEAGMGGRYDATNIC-DNI 158

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               T  +  + +          +  A I  +  Y+               +       +
Sbjct: 159 VSVITNVSLEHTEYLGDTIYKIAKEKAGIIKNCPYTIFADNNPDVKKAIEEATDKYVNVL 218

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K           ++    D +           Y   + A   +        +++   
Sbjct: 219 EKYKDSTYKLDFNTFLTNIFIDGNKYEYSLFGDYQYKNFLCAYEVVKYLGVDENIIKEAA 278

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQ 396
           K  +   RFE      +   +  D AH    +E ++K ++   S   + V      D+D 
Sbjct: 279 KKVIWQCRFEVY---FKNPLVIFDGAHNLAGVEELIKIVKQHFSKDEVTVLVSILKDKD- 334

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             R  M +   +++   ++T   DNPR+   +++  + +     F  + + I+A   A+ 
Sbjct: 335 --RVSMFRKLNEISSNIVLTSIPDNPRASTAKELY-DYVENKKDFEYEEDPIKAYNLALS 391


>gi|62391218|ref|YP_226620.1| folylpolyglutamate synthase [Corynebacterium glutamicum ATCC 13032]
 gi|41326558|emb|CAF21040.1| FOLYLPOLYGLUTAMATE SYNTHASE [Corynebacterium glutamicum ATCC 13032]
          Length = 507

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + +      +++D AH  +    +   + R     R+I V G   D+D      
Sbjct: 364 PGRLERLRSAPT---VFIDAAHNPHGAAALGAALDRDFEFRRLIGVIGVLCDKDA---RG 417

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +         + T   + R+ D   +        G      + +   A+  AIE+   
Sbjct: 418 ILESLEPYLHEIVCTQTASERALDAYDLAEYAREIYGDERVHVQEDLAGAVELAIELAED 477

Query: 459 QDV-----LVVAG 466
            DV     +V+ G
Sbjct: 478 TDVQSGSGVVITG 490


>gi|29348856|ref|NP_812359.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298387937|ref|ZP_06997486.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 1_1_14]
 gi|29340762|gb|AAO78553.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|298259344|gb|EFI02219.1| UDP-N-acetylmuramate--alanine ligase [Bacteroides sp. 1_1_14]
          Length = 467

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 109/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQSHIECTAF-LGGISKNYGTNLLLSQKSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T    DH+D + T       K  
Sbjct: 169 ADEFDRSFHWLSPYMSV-------------------ITATDPDHLDIYGT------EKAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++    AG RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQAGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  +    +P    + N + A  L    G+    + + +     V  RF+F   
Sbjct: 264 FVAPDTRINNIQLGVPVSINIENGVAAMALAHLNGVTDEEIRQGMNSFRGVDRRFDF-KI 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
            +       DYAH  + ++  + +IR +   + I          +  R      A  L+ 
Sbjct: 323 KNDQVVFLSDYAHHPSEIKQSVLSIRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+++L
Sbjct: 382 LDEVILVDIYPARETP-------IPGVTSKLIYDNLRPGIEK--SMCKKEEIL 425


>gi|330828377|ref|YP_004391329.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas veronii B565]
 gi|328803513|gb|AEB48712.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas veronii B565]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 106/354 (29%), Gaps = 24/354 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  + + + L    +       +F    RL +        
Sbjct: 101 QDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFL-IGGVPGNFPVSARLGS-------A 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               + +        +  S  +  H             NL  DH D      A       
Sbjct: 153 PFFVIEADEYDCAFFDKRSKFVHYH------PRTLVMNNLEFDHADIFPDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +          ADD  +     R       V  VG         K+    +  +V 
Sbjct: 207 LMRTVPSNGRVLFPQADDNLT---AVRKMGCWSEVELVGQDDAKWQAVKLADDGSAFEVW 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +  E K  +  +   GE  V N L+A       G+     +  L +      R E  G  
Sbjct: 264 LDGE-KQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKG-E 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLA 410
             G  +Y D+AH   ++E  L  +R  +   RI+ V     +  + G          D A
Sbjct: 322 VAGISVYDDFAHHPTAIETTLGGLRAKVGCSRILAVLEPRSNTMKLGVHKEELAGCFDGA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D            D  ++ A +           +    I   +      D +++
Sbjct: 382 DEVFFFQPPNIGWDLGEVTAHMTR---PAKVFNDLETLINRLVAESRDGDHILI 432


>gi|224282642|ref|ZP_03645964.1| UDP-N-acetylmuramate--L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313139800|ref|ZP_07801993.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132310|gb|EFR49927.1| UDP-N-acetylmuramate-L-alanine ligase [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 529

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 60/433 (13%), Positives = 103/433 (23%), Gaps = 42/433 (9%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRS--NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           +GA+ +V SSA    +            I+   +    L          +    + V G 
Sbjct: 87  RGADTVVYSSAIKPDNPEIVAAHERGIRIVHRSDILALL---------MNGRRAVTVAGA 137

Query: 124 SGKSSVASFVQQICQRSG------LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
            GK++ +S +  I   +G       S    G          D        + +A+A    
Sbjct: 138 HGKTTTSSLLSHILVHAGTGELADPSYAIGGTIQAPGGAVLDGGHAGRGDVLVAEADESD 197

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
            S      S+   ++ L  H              +               +         
Sbjct: 198 GSFCKYRPSIAVITNALADHLDHYGDEAHYCAAFIDHAGHASGHVVMTGDDEGAVAVLRD 257

Query: 238 LPK---ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           L         +    DA     ++ A                                  
Sbjct: 258 LDPSVARRTIVYATKDADQIGDLRGATLVRIDAEHESADSGRETFTVHVPASLASVCGCG 317

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG     NA  A    + +G+      +          RF+  G  + 
Sbjct: 318 DADLALPVSLAIPGMHNARNATAAILAAMLLGVTPEAAAQAASTFLGASRRFQVRGEEN- 376

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADI 412
           G  +  DYAH    +  +L   R      +I V        + +       +     AD 
Sbjct: 377 GVTVVDDYAHHPTEISALLDAARRRYPRSVIRVLFQPHLFSRTRMFVHEFAEALSK-ADD 435

Query: 413 AIVTDDNPRSE--------DPEKIRAEIIHGIPG---------FIEKGNRIEAIRTAIEM 455
            IVT   P  E            I  +    +P               +   A +     
Sbjct: 436 VIVTGIFPARELQRDFPDVSAMTIV-DAAQDVPHASAQGDGTWISAVDDMQVAAQMLAMR 494

Query: 456 LNKQDVLVVAGKG 468
               DV+   G G
Sbjct: 495 CRPTDVVFTVGAG 507


>gi|145297483|ref|YP_001140324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850255|gb|ABO88576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 427

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 125/398 (31%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV S   +L        +   + +V +              +    ++A+TG++GKS
Sbjct: 58  AHMIVASPGIALATPELKAAAEFGVSIVGDIE--------LFVRETQVPVIAITGSNGKS 109

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +GL     G   T               + L         Q +    +
Sbjct: 110 TVTTLVGEMIAEAGLKVGVGGNIGTP-------------ALEL-------LKQPMDLCVL 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + +            
Sbjct: 150 ELSSFQLET--THSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQHS---------- 197

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
               +       A             G   +    C +  +  +T+  E         + 
Sbjct: 198 ---KHILVNRDDAQTQPDVGQVWQSFGLDCNGYGRCLLDGRHWLTLHGEPLLPVDEMKIV 254

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  LC A+GI     L  L +   +P R  FV   +    I    A    
Sbjct: 255 GAHNQANALAAMALCDAVGIPREPQLAVLRRFEGLPHRARFVREVNGVRWINDSKATNVG 314

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +  +R    GR++++ G  G + Q   P+   +   + D       +        
Sbjct: 315 ATLAAVAGVREAVKGRLLLLAGGQG-KGQDFGPVQALLGHQI-DHMYCFGQD------AD 366

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I   +        +    +     A       D +++A
Sbjct: 367 ILLALGEQTERVSDLDAAV---AKAAADARPGDWVLLA 401


>gi|23308932|ref|NP_601576.2| folylpolyglutamate synthase [Corynebacterium glutamicum ATCC 13032]
 gi|21325146|dbj|BAB99768.1| Folylpolyglutamate synthase [Corynebacterium glutamicum ATCC 13032]
          Length = 458

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 15/133 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + +      +++D AH  +    +   + R     R+I V G   D+D      
Sbjct: 315 PGRLERLRSAPT---VFIDAAHNPHGAAALGAALDRDFEFRRLIGVIGVLCDKDA---RG 368

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNK 458
           + +         + T   + R+ D   +        G      + +   A+  AIE+   
Sbjct: 369 ILESLEPYLHEIVCTQTASERALDAYDLAEYAREIYGDERVHVQEDLAGAVELAIELAED 428

Query: 459 QDV-----LVVAG 466
            DV     +V+ G
Sbjct: 429 TDVQSGSGVVITG 441


>gi|148826251|ref|YP_001291004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
 gi|166224762|sp|A5UCX0|MURD_HAEIE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148716411|gb|ABQ98621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
          Length = 437

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 122/394 (30%), Gaps = 53/394 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++           + V+ +                 + I+ +TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALKAGVEVIGDIE--------LFCRAATKPIVGITGSNGKSTVT 120

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ + +G+     G                   + L      L         +E S
Sbjct: 121 TLVYEMAKAAGVKVGMGGNIGIP-------------ALSLLNEDCEL-------YVLELS 160

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+      +K  A +  N+  DH+D +   + Y  AK+R++          ++  +D
Sbjct: 161 SFQLET--TYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIY----HNAEVGVLNNED 214

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +    +                          +  K +V +  E              
Sbjct: 215 KLTFGEGENQARQTVSFAENSADYWLKTENGKQYLMVKDEVILPCEEATLVGRHNY---- 270

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L A  L  A+GI+   +   L     +  RF+     +    I    A    S  
Sbjct: 271 --MNILAATALAQAVGINLDAIRTALRHFKGLDHRFQLAHQANGVRWINDSKATNVGSTV 328

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G++ ++ G  G     K     ++A  +    I+     R      + A
Sbjct: 329 AALSGL--YVEGKLHLLLGGDG-----KGADFSELAELINQPHIICYCFGRD---GALLA 378

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++              +AI      L   D++++
Sbjct: 379 KLSS---QSYLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|78223678|ref|YP_385425.1| folylpolyglutamate synthetase [Geobacter metallireducens GS-15]
 gi|78194933|gb|ABB32700.1| Folylpolyglutamate synthetase [Geobacter metallireducens GS-15]
          Length = 424

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 7/126 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E     +   RI  D AH       + +++  +   R+IVV G  GD+D     I
Sbjct: 283 WPGRME---YFAGPPRIIFDGAHNPAGALALAESLAGVPRRRLIVVVGVMGDKDAAG--I 337

Query: 402 MGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +G +   L D  + VT    R     ++ A          + G   E +  A  M    D
Sbjct: 338 LGPLL-PLTDEVVAVTPAVERGLSSAELAALCRRLGVSATDGGRVPEGLAMARNMAAVDD 396

Query: 461 VLVVAG 466
           +++V G
Sbjct: 397 LILVCG 402


>gi|51892169|ref|YP_074860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Symbiobacterium thermophilum IAM 14863]
 gi|60390359|sp|Q67QM7|MURD_SYMTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51855858|dbj|BAD40016.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 108/352 (30%), Gaps = 36/352 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ VTG++GK++  + + +I + +G  ++  G          +               
Sbjct: 110 APVIGVTGSAGKTTTTTLIGEILRAAGRETYVGGNIGKPLIEQVE--------------- 154

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +      V +E SS  L    L          TN+  +H+D H T + Y  AK  +F
Sbjct: 155 ---AIPSEAVVVLELSSFQLQ---LVHRSPHIAVVTNVSPNHLDVHATMEEYVEAKKAIF 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
               P +   +  ADD   +     A +           G       V       +    
Sbjct: 209 RRQSPADWLVL-NADDPTVRAFAAEARSRVVLFSRRADPGGRDAAF-VREDRVIWRRGGR 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                F     LPG     N L A   C   G   + V E + +   V  R E V     
Sbjct: 267 ETPILFLDEIRLPGLHNQENVLAAVAACFLAGAPLSAVREVVTQFTGVEHRIEPVRVLDG 326

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A +       L  +        IV+   G D+     PI   +A  +  + +
Sbjct: 327 VKWYNDSKATSPAEAVAALTTLPA-----PIVLIAGGSDKGIPFDPIAPLVAEKVKTLIL 381

Query: 415 VTDDNPRSEDPEKIRAEIIHG--IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    P      KI   +  G          +  EA+  A E     D +++
Sbjct: 382 MGPTAP------KIEEAVRRGGYAGPIRRAADMAEAVALAREAAAPGDTVLL 427


>gi|325956500|ref|YP_004291912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus 30SC]
 gi|325333065|gb|ADZ06973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus 30SC]
          Length = 459

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 105/354 (29%), Gaps = 43/354 (12%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
              + VTG++GK++     Q+I        G  ++ +G      S               
Sbjct: 113 APYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVP----------- 161

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                   +     + VE SS  L     D    +A         H+DYH+T + Y NAK
Sbjct: 162 -------KATKDDILVVEISSFQL-LGVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAK 213

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           + +       +      A+      + K    +  ++ +                   Q 
Sbjct: 214 LNVTRTQTSDDYFI---ANYDQKDILAKEKKVSPAKMQTFSETDHNADYFIGDEYLESQN 270

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             I            LPG   + N+LVA      +G D+  ++  L        R ++V 
Sbjct: 271 EKIMK-----IADIKLPGIHNLQNSLVAIATSKIMGADNDDIVAVLSTFAGAKHRLQYVT 325

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T           +    +  + +   +        V+   G DR      ++  +     
Sbjct: 326 TLDGRKVYNDSKSTNIEAATVAIPAFKEPE-----VLIAGGLDRGFLFDDLVP-LFKKHV 379

Query: 411 DIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              ++       E    +       G+   +      EA+  A E+    DVL+
Sbjct: 380 KAIVL-----YGETKYLLADAARKAGVKDIVIVNTLQEAVPRAYELTEPGDVLL 428


>gi|331645198|ref|ZP_08346309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
 gi|330909935|gb|EGH38445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           AA86]
 gi|331045955|gb|EGI18074.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
          Length = 438

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    +    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWVNDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAVLRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|291278981|ref|YP_003495816.1| folylpolyglutamate synthase [Deferribacter desulfuricans SSM1]
 gi|290753683|dbj|BAI80060.1| folylpolyglutamate synthase [Deferribacter desulfuricans SSM1]
          Length = 377

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 110/366 (30%), Gaps = 30/366 (8%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
            L         K    I+ + GT+GK + A  + QI   +G +          +   +  
Sbjct: 27  ALRDLG--FNEKKLGTIIHIAGTNGKGTTAHTLYQILINNGYNVALYTSPHLKNITERII 84

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             +    I       Y     +   ++      L    L     ++  F+ +        
Sbjct: 85  YNSKQIDIDTFNNYFYDLLSFIKKYNLTY-FEALTLIALIYFSELSPDFSIIETGMGGKF 143

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                  N    +    L  E       +D     +             V        + 
Sbjct: 144 DATNILNNKIPVITTIALDHEQFLGSRLED-----IANEKIAIIKNNEKVFLGHNNSKIL 198

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
            +   +      I+ +   ++            N  +   +   + +   +    L    
Sbjct: 199 DLIKNNFPTIDIITPDENTYNLYKKYFPNPYYKNISLVCLIVNYLNLKYDISSISLPNC- 257

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
               RFE             D AH  N +  +LKN +     +I +++ C  DR+  K  
Sbjct: 258 ----RFEKYKN------FIFDGAHNFNGIVELLKNFKE----KITILYSCTKDRNFTK-- 301

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +    ++  +I IVT+ N  +E    I  E+        +  N+ +A+R AIE+    D
Sbjct: 302 -IINYMVNKKNIVIVTEMN--NERTLVI-NEVRIEHKNLFKIKNKKDALRKAIELSKNND 357

Query: 461 VLVVAG 466
            ++V G
Sbjct: 358 -ILVCG 362


>gi|262045339|ref|ZP_06018363.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037257|gb|EEW38504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 457

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 97/359 (27%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       Q   +
Sbjct: 203 QFHHLVRIVPGKGKIILPENDINLKQVMAMGCWSEQEQVGEQGHWQAKKLNADASQWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L+ +R    G  RI+ V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEP-----RSNTMKMGVCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +       +        ++  +  D ++V
Sbjct: 377 SLGRADEVFLLQPQH---IPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV 432


>gi|261342895|ref|ZP_05970753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288314798|gb|EFC53736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 459

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 96/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVVAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIILPENDINLKQTMAMGCWSEQELVGEQGHWQAKKRNADASEWDVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A   + L        R E  G  +
Sbjct: 263 LDGEKVGEVKWGLVGEHNMHNGLMAIAAARHVGVVPADAAKALGTFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RI+ V        +     MG    DL  
Sbjct: 322 HGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       I       +        ++     D ++V
Sbjct: 377 SLGRADEVFLLQPQH---IPWQVAEVADACIQPAHWSADVDVLADMVVKAAQPGDHILV 432


>gi|170768370|ref|ZP_02902823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
 gi|170122474|gb|EDS91405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
          Length = 438

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 135/398 (33%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +                +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYP---FGLQQYRTAKLRIYDNAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPDVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|153002099|ref|YP_001367780.1| UDP-N-acetylmuramate [Shewanella baltica OS185]
 gi|151366717|gb|ABS09717.1| UDP-N-acetylmuramate [Shewanella baltica OS185]
          Length = 463

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 105/361 (29%), Gaps = 36/361 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I    G    F IG        +     T    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A      
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQKQFN 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +  +          A  + +         +      +       K  +    +  
Sbjct: 209 HLVRTVPGEGKIVWPADSHAVKQTI--DMGCWSEQETYHLAESTSGWYGKALSDDCHRFE 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  + NA++A      +G+  +  +E L K      R E +G 
Sbjct: 267 VFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGD-------RDQGKRPIMG 403
              G  +Y D+AH   ++   LK +R  +   +I VV     +       +D     +M 
Sbjct: 326 TVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMM- 384

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 AD A +   +    + ++     +  +    +  +    +          D +V
Sbjct: 385 -----QADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVTATAKAGDTIV 436

Query: 464 V 464
           V
Sbjct: 437 V 437


>gi|124026491|ref|YP_001015606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL1A]
 gi|123961559|gb|ABM76342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL1A]
          Length = 469

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 124/353 (35%), Gaps = 35/353 (9%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
                     + +TGT+GK++V + +  I + + L++   G      S            
Sbjct: 111 AWERLTHIPSIGITGTNGKTTVTNMLNHILKLNNLNTDMGGNIGKALSK----------- 159

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +A      ++Q +  + +E SS  ++      +    G +T    DH++ H   ++Y 
Sbjct: 160 --IALENMKNNNQELNWLVLELSSFQIEGS--PKVAPTIGIWTTFTPDHLERHNDIESY- 214

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                  +  L ++S   IY  D      +        + + VG   +  + +      +
Sbjct: 215 ----FKIKRSLLEKSSIRIYNSDDQ---FLSSKRKELPKGIWVGTNQQSFYSEYQKFWID 267

Query: 288 KQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
           ++      + + F      +PG+  + N L+       IG+D + + + ++    +P R 
Sbjct: 268 QKGYIFEDKKQLFHSSILKIPGKHNLQNLLLVIAAAREIGLDDSSIAKSIKSFRSIPHRL 327

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
           E++G  +         A   +S    LK++        I++   G  +     P + +I 
Sbjct: 328 EYLGKINNLSFYNDSKATNFDSSITGLKSVP-----HPIILLAGGIQKKGDFMPWVKQIK 382

Query: 407 LDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
                I +     N   E+       +       I K N  EA   +I +  +
Sbjct: 383 QSTNGIVLFGLSANNLKEELL-----MSSYTGEIIIKKNLEEATIASINIARE 430


>gi|111018327|ref|YP_701299.1| tetrahydrofolylpolyglutamate synthase [Rhodococcus jostii RHA1]
 gi|110817857|gb|ABG93141.1| probable tetrahydrofolylpolyglutamate synthase [Rhodococcus jostii
           RHA1]
          Length = 475

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V +      +++D AH  +    +   +       +++ V    GD+D     
Sbjct: 327 NPGRLERVRSAPT---VFLDAAHNPDGARALAAALTAEFDFRKLVGVVSVMGDKDVDG-- 381

Query: 401 IMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAI---- 453
            +      + D  +VT++   R+ D + +    +   G    +      +A+ TAI    
Sbjct: 382 -ILSALEPVFDELVVTNNGSARAMDVDDLANLAVAKFGDERVVVAPTLADALETAIGLAE 440

Query: 454 EMLNKQDVL 462
           E+    + +
Sbjct: 441 EVAEPGEAV 449


>gi|126172967|ref|YP_001049116.1| UDP-N-acetylmuramate [Shewanella baltica OS155]
 gi|125996172|gb|ABN60247.1| UDP-N-acetylmuramate [Shewanella baltica OS155]
          Length = 463

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 105/355 (29%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I    G    F IG        +     T    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A      
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQKQFN 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +  +          A  + +         +      +       K  +    +  
Sbjct: 209 HLVRTVPGEGKIVWPADSHAVKQTI--DMGCWSEQETYHLAESANGWYGKALSDDCHRFE 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  + NA++A      +G+  +  +E L K      R E +G 
Sbjct: 267 VFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   LK +R  +   +I VV     +  + G        ++  
Sbjct: 326 TVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMMQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + ++     +  +    +  +    +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVTATAKAGDTIVV 437


>gi|253988595|ref|YP_003039951.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780045|emb|CAQ83206.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus asymbiotica]
          Length = 492

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 134/424 (31%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +V S+A      +  A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 80  ASVVVASTAILADNPEIIAAREARIPVI-----RRAEMLAELMRYRHG------IAIAGT 128

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I  ++GL    +     + +     RL +   +      S  S     
Sbjct: 129 HGKTTTTAMISSIYAQAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 185

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +             F   LP    
Sbjct: 186 ------------------LQPMVAVVTNIEADHMDTYHGDFEKLKQTFINFLHNLPFYGR 227

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   KE++ R                 I   +         V+   +  D   +
Sbjct: 228 AVMCIDDPVVKELIPRVGRYITTYGFSEEADVRITHYEQKGAQGYFTVS-RQDMVDLKVV 286

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI  + +L  L        RF+F+G  S          
Sbjct: 287 LNAPGRHNALNAAAAVAVATEEGISGSDILAALAGFQGTGRRFDFLGNFSLEHVNGKSGS 346

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D  
Sbjct: 347 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLNQ-VDAL 405

Query: 414 IVTDDNPRSE------DPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++ D     E      D   +   I     +   +       AI  A ++L+  D+++V 
Sbjct: 406 LMLDVYSAGEAVIPGADSRSLCRTIRSRGKLDPILVSEPEKVAIVLA-QVLDGNDLVLVQ 464

Query: 466 GKGH 469
           G G+
Sbjct: 465 GAGN 468


>gi|254786996|ref|YP_003074425.1| UDP-N-acetylmuramate--L-alanine ligase [Teredinibacter turnerae
           T7901]
 gi|259509783|sp|C5BP33|MURC_TERTT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237685124|gb|ACR12388.1| UDP-N-acetylmuramate--alanine ligase [Teredinibacter turnerae
           T7901]
          Length = 473

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 130/426 (30%), Gaps = 70/426 (16%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VV+S+   +     + +    + V   R+   L       +G      +AV GT GK++
Sbjct: 77  VVVNSSAVDEANPELLEARQQRIPV--VRRAEMLGELMRYRHG------IAVAGTHGKTT 128

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  I    G           ++S   +  L                         +
Sbjct: 129 TTSLIASIF-AEGDKDPTFVIGGLLNSAGTNAALG------------ASRYLVAEADESD 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           AS   L          +    TN+  DH+D +             F   LP    A++  
Sbjct: 176 ASFLHLQ--------PMVAVVTNIDADHMDTYGGDFGTLKKTFVEFLHNLPFYGVAVMCG 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD     ++                    +  K  +   + ++    EG+  D    +PG
Sbjct: 228 DDPVITSLIPDIARTVITYGFSEDCDFKAYDVKQESGKQRFKIK-RPEGEPLDIYLNMPG 286

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG----RIYVDYAH 364
           +  V NA  A  +    GID   + + L +   V  RF+  G           +  DY H
Sbjct: 287 QHNVLNATAAVAVATDEGIDDIAIQQGLAQFMGVGRRFQIYGDYPLPQGGSVMLVDDYGH 346

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +   ++ +R     R + +        R +       ++     D  ++ +     
Sbjct: 347 HPREVAATIRAVRDSWPDRRLFMVYQPHRYTRTRDLYEDFVEVLSS-VDQLVLLEVYAAG 405

Query: 423 EDP-------------------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           E+P                   + I  E I G+P  ++            +++   D+++
Sbjct: 406 EEPIPGADGRHLSRTIRTRGLVDPIFVEGIEGVPAVVK------------DLVKPGDIII 453

Query: 464 VAGKGH 469
             G G+
Sbjct: 454 TQGAGN 459


>gi|255659950|ref|ZP_05405359.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
 gi|260847824|gb|EEX67831.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
          Length = 466

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 81/282 (28%), Gaps = 13/282 (4%)

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            + A          +       +  N+  DHI  H + + Y   K RLF E    +   +
Sbjct: 164 CIAAEISSYQMEATEHFHPHVAAVLNVTPDHIVRHGSMEVYQAMKERLFREETEDDYLVL 223

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
            Y D+       +              +        V       +               
Sbjct: 224 NYDDEKTRGMKARTVAQVCYFSRREELEEGVFVRGDVKNGLIVIRWQGQEYELCHTDELG 283

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G   V NAL A  +    G +  L++  L+    V  R E+V T           A  
Sbjct: 284 IKGPHNVENALAAIAVAFFAGCEPTLMVPVLKSFRGVEHRIEYVTTIDGVPYYNDSKATN 343

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           ++S    L+           ++   GGD          K+  +  D  ++          
Sbjct: 344 TDSAIKALETFDGH------IILLAGGDDKMTDLTDFMKLVCERVDALVLI----GRAAA 393

Query: 426 EKIRAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDVLVV 464
               A + +G P         +  +A+  A  +  +  V+++
Sbjct: 394 RFYGAAVDNGFPENQIYAAGYSMRKAVEIAHALAKEPAVVLL 435


>gi|323480232|gb|ADX79671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis 62]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD       +       +  +              A     ++  + E         +
Sbjct: 218 -ADDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|323466805|gb|ADX70492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           helveticus H10]
          Length = 459

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 112/393 (28%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y           N PI+        LS              + VTG++GK++     Q+
Sbjct: 84  PYENPMVKKAEELNIPIITEPEI--ALS--------CSDAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKSGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +      A+  
Sbjct: 176 FQL-LGVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQNSDDYFI---ANYD 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K       ++ +                   Q   I            LPG   
Sbjct: 232 QKDILAKEKEVTPAKMQTFSETDSSADYFIGDEYLESQNEKIMK-----IVDIKLPGIHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA  +   +G D+  +   L        R ++V T           +    +  +
Sbjct: 287 LQNSLVAIAISKVMGADNDDIAAVLSTFTGAKHRLQYVTTLDGRKVYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +        ++       E    +   
Sbjct: 347 AIPSFKEPE-----VLIAGGLDRGFLFDDLVP-LFKKHVKSIVL-----YGETKYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E+    DV++
Sbjct: 396 ARKAGIKDIVIVNTLQEAVPRAYELSEPDDVIL 428


>gi|296327348|ref|ZP_06869900.1| tetrahydrofolate synthase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296155598|gb|EFG96363.1| tetrahydrofolate synthase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 415

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 111/360 (30%), Gaps = 25/360 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLS---SFQIGPTSTISSFAQDNRLTTPS-- 166
           +    ++ +TGT+GK SV++ V++I   +G                    +++  +    
Sbjct: 40  EKSYKVIHITGTNGKGSVSTTVERILLDAGYKIGKYTSPHILKFNERIIFNDKYISDEDV 99

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I      +         +         D   L+         TN+  D+I
Sbjct: 100 AKYYERVKKIIDEHNIQATFFEVTTAMMFDYFKDMKADYVILEAGMGGRYDATNIC-DNI 158

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               T  +  + +          +  A I  +  Y+               +       +
Sbjct: 159 VSVITNVSLEHTEYLGDTIYKIAKEKAGIIKNCPYTIFADNNPDVKKAIEETTDKYVNVL 218

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              K           ++    D +           Y   + A   +        +++   
Sbjct: 219 EKYKDSTYKLDFNTFLTNIFIDGNKYEYSLFGDYQYKNFLCAYEVVKYLGVDENIIKEAA 278

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQ 396
           K  +   RFE     S+   +  D AH    +E ++K ++   S   + V      D+D 
Sbjct: 279 KKVIWQCRFEVY---SKNPLVIFDGAHNLAGVEELIKIVKQHFSKDEVTVLVSILKDKD- 334

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
             R  M +   +++   ++T   DNPR+   +++  + +     F  + + I+A   A+ 
Sbjct: 335 --RVSMFRKLNEISSNIVLTSIPDNPRASTAKELY-DYVENKKDFEYEEDPIKAYNLALS 391


>gi|257081246|ref|ZP_05575607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis E1Sol]
 gi|257083904|ref|ZP_05578265.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Fly1]
 gi|300859813|ref|ZP_07105901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TUSoD Ef11]
 gi|256989276|gb|EEU76578.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis E1Sol]
 gi|256991934|gb|EEU79236.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Fly1]
 gi|300850631|gb|EFK78380.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TUSoD Ef11]
 gi|315144378|gb|EFT88394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2141]
 gi|315162942|gb|EFU06959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0645]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD       +       +  +              A     ++  + E         +
Sbjct: 218 -ADDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|121998872|ref|YP_001003659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
 gi|121590277|gb|ABM62857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 136/399 (34%), Gaps = 51/399 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE +VVS    L+    T        VV      L+LFA  + G     + AVTG++GK
Sbjct: 70  GAERVVVSPGLDLRHGVWTELRAAGRSVVGE----LTLFAEAVAG----PVCAVTGSNGK 121

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V S + ++ + +G      G   T               + L                
Sbjct: 122 STVVSLLGEMARAAGWDVAVGGNLGTP-------------ALELL------EQAPADGYL 162

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+     G +    +  N+  DH+D + +   Y  AK R+    L     A++
Sbjct: 163 IEVSSFQLEA--CPGFRADVAALLNVSADHMDRYDSLDDYAAAKARV----LDGARVAVL 216

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D     + +RA           +         +     +  +  + + +      P+
Sbjct: 217 NAEDPQIAGLGQRADAV------RHFNLDGPADYHLLEQGGRAWLAAAGQPRQAIDELPV 270

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NAL A  L  A+GI        L+    +P R E VG       I    A   
Sbjct: 271 PGRAHCANALAAMALADALGIAEVAQCRALQAFSGLPHRMESVGEWRGVRWINDSKATNV 330

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    +  +      R +V+   G  +    RP+  +   + A   ++       ED  
Sbjct: 331 GAAVAAIGGLH-----RPVVLIAGGQGKGADFRPL-AQACAESARAVVLI-----GEDAA 379

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                 I G        + + A+  A       D +++A
Sbjct: 380 A-IEAAIAGRVPTERADSMVGAVAAAARWAEPGDAVLLA 417


>gi|306822445|ref|ZP_07455823.1| tetrahydrofolate synthase [Bifidobacterium dentium ATCC 27679]
 gi|309802460|ref|ZP_07696566.1| bifunctional protein FolC [Bifidobacterium dentium JCVIHMP022]
 gi|304553990|gb|EFM41899.1| tetrahydrofolate synthase [Bifidobacterium dentium ATCC 27679]
 gi|308220860|gb|EFO77166.1| bifunctional protein FolC [Bifidobacterium dentium JCVIHMP022]
          Length = 515

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + T+     I +D  H  N+ E +   I       +++ V    GD+       
Sbjct: 314 PGRLEQIRTSPT---IILDGGHNVNAAEALRAAIEENYDFQQLVGVIAMMGDKQVE---E 367

Query: 402 MGKIALDLADIAIVTDDNPRS-----EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              +   L    IVT+++ R      ED +KI  ++  G           +AI+ A+ M+
Sbjct: 368 YLGVLEPLLSHVIVTENSWRDRVMPAEDLKKIADQVF-GPERVTCIPQLPDAIQEAVNMV 426

Query: 457 NKQD--------VLVVAG 466
           + +D         +++ G
Sbjct: 427 DSEDELGVGYGHGVLICG 444


>gi|296112510|ref|YP_003626448.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|295920204|gb|ADG60555.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|326564127|gb|EGE14365.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           46P47B1]
 gi|326564829|gb|EGE15037.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           12P80B1]
 gi|326566496|gb|EGE16643.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           103P14B1]
 gi|326568016|gb|EGE18108.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC7]
 gi|326570680|gb|EGE20714.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC1]
 gi|326571236|gb|EGE21259.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC8]
 gi|326573081|gb|EGE23054.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis CO72]
 gi|326577221|gb|EGE27114.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           101P30B1]
 gi|326577784|gb|EGE27656.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis O35E]
          Length = 486

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 125/384 (32%), Gaps = 45/384 (11%)

Query: 51  GNKED-GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFAS 107
           G     GH      I   A+ +VVSSA   Q+    A ++++ P++   +    L     
Sbjct: 68  GVTVHVGHD--ASNIKM-ADVVVVSSAIDRQNPEIRAALKAHIPVVRRADM---LGELMR 121

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
             +G      +AV G  GK++  S +  +   +GL    +     +++  ++  L     
Sbjct: 122 YRHG------IAVAGAHGKTTTTSLLTMMLTEAGLDPTYV-IGGKLNASGKNAALGASRY 174

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           +      S  S                       ++ +A   TN+  DH++ ++      
Sbjct: 175 LVAEADESDASFL--------------------SLRPMACVVTNIDEDHMETYEGSFDKL 214

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                 F   +P    A++  DD     ++            +        +  +     
Sbjct: 215 KQAYVQFLHNMPFYGLAVLCGDDKELYAMIDDIAR-PVITYGLEKHNDVQAVDVIADGTK 273

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                +  + K       +PG   VYNAL A  +    G+    + + +EK   V  RFE
Sbjct: 274 THFTVLRKDKKPLPITLNIPGIHNVYNALGAITMATDEGVSDKAICQAVEKFAGVGRRFE 333

Query: 348 FVGTNS-----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             G+           +  DY H    + M +K  R     R  +V      R    R   
Sbjct: 334 NNGSYPLTDGSGDVVLIDDYGHHPTEIAMTIKAARQSYPDRR-LVMMFQPHRYSRTRDCF 392

Query: 403 GKIALDLA--DIAIVTDDNPRSED 424
            +    L+  D  I+ D     E+
Sbjct: 393 SEFVNVLSQVDKLILLDVYSAGEE 416


>gi|304410633|ref|ZP_07392251.1| UDP-N-acetylmuramate [Shewanella baltica OS183]
 gi|307304730|ref|ZP_07584480.1| UDP-N-acetylmuramate [Shewanella baltica BA175]
 gi|304351117|gb|EFM15517.1| UDP-N-acetylmuramate [Shewanella baltica OS183]
 gi|306912132|gb|EFN42556.1| UDP-N-acetylmuramate [Shewanella baltica BA175]
          Length = 463

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 105/355 (29%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I    G    F IG        +     T    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A      
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQKQFN 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +  +          A  + +         +      +       K  +    +  
Sbjct: 209 HLVRTVPGEGKIVWPADSHAVKQTI--DMGCWSEQETYHLAESTSGWYGKALSDDCHRFE 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  + NA++A      +G+  +  +E L K      R E +G 
Sbjct: 267 VFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   LK +R  +   +I VV     +  + G        ++  
Sbjct: 326 IVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMMQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + ++     +  +    +  +    +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVTATAKAGDTIVV 437


>gi|291326816|ref|ZP_06125975.2| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
 gi|291312715|gb|EFE53168.1| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
          Length = 472

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 132/421 (31%), Gaps = 51/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A S ++          I V    R+   L+      +G      +AV GT G
Sbjct: 64  ASVVVVSTAISSENPEIQAAKELRIPV---IRRAEMLAELMRYRHG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL    +     + S     RL +   +      S  S       
Sbjct: 115 KTTTTAMISGIYAQAGLDPTFV-NGGLVKSAGTHARLGSSRYLIAEADESDASFLH---- 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +Q            F   LP    A+
Sbjct: 170 ----------------LQPLVAVVTNIEADHMDTYQGDFDNLTNTFINFLHNLPFYGRAV 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   + ++ +                 I   +         +       +   +  
Sbjct: 214 MCIDDPVIRSLLPKIGRYITTYGFSEDADVRITQYEQKGNQGFFTIA-RENMPELTVVLN 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------R 357
            PG     NA  A  +    GID   +L  L +      RF+F+G               
Sbjct: 273 APGRHNALNATAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNFPLRNVNGKEGEVM 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIV 415
           +  DY H    ++  +K  R     + IV+        R +        +     D+ ++
Sbjct: 333 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFVNVLGQ-VDVLLM 391

Query: 416 TDDNPRSE------DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            D     E      D   +   I   G    I   +  +      + L++ D+++V G G
Sbjct: 392 LDVYSAGEKHVPGADSRSLCRSIRGRGQIDPIYVADIEQIPHILAQTLDENDLILVQGAG 451

Query: 469 H 469
           +
Sbjct: 452 N 452


>gi|255974062|ref|ZP_05424648.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T2]
 gi|256957086|ref|ZP_05561257.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis DS5]
 gi|257077882|ref|ZP_05572243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis JH1]
 gi|294780582|ref|ZP_06745945.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis PC1.1]
 gi|307268073|ref|ZP_07549461.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4248]
 gi|307278956|ref|ZP_07560015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0860]
 gi|312901048|ref|ZP_07760339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0470]
 gi|255966934|gb|EET97556.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T2]
 gi|256947582|gb|EEU64214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis DS5]
 gi|256985912|gb|EEU73214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis JH1]
 gi|294452409|gb|EFG20848.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis PC1.1]
 gi|306504343|gb|EFM73554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0860]
 gi|306515714|gb|EFM84241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4248]
 gi|311291874|gb|EFQ70430.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0470]
 gi|315031721|gb|EFT43653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0017]
 gi|315034222|gb|EFT46154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0027]
 gi|315147944|gb|EFT91960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4244]
 gi|329574355|gb|EGG55927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TX1467]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D       +       +  +              A     ++  + E         +
Sbjct: 218 -AEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|254832007|ref|ZP_05236662.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           10403S]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 110/350 (31%), Gaps = 47/350 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +   +            +   +   +  +   T+  + 
Sbjct: 115 TTGLLSHVVGAIRPTSYLIGDGTGSGTKDAKY-----FALEACEYQRHFLAYKPTYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 169 ---------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K   +        G + +F     +      +      E     F  P  G
Sbjct: 204 GDDAE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V   L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVKRRFSIT--EKGNQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD 417
           +   +   R     + +V         + +  + G   +L+LAD   + D
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCD 369


>gi|220929148|ref|YP_002506057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulolyticum H10]
 gi|254766044|sp|B8I2T4|MURD_CLOCE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219999476|gb|ACL76077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulolyticum H10]
          Length = 465

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 107/365 (29%), Gaps = 47/365 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                P  + AVTG+ GK++  + + +     G   +  G   T      D+   T   I
Sbjct: 111 FLKLCPAQVFAVTGSDGKTTTTTLIYKTLSEEGFKCWLGGNIGTPLLSKIDDVAETDKVI 170

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L               TN+  +H+D H++ Q Y +
Sbjct: 171 ------------------LELSSFQL---MTIKDCPSVAVITNISPNHLDVHKSLQEYID 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK  +F      +   + + ++       +                  ++      +  +
Sbjct: 210 AKKNIFINQNENDKLVLNFDNEITKSFNYEARGEYVYFSRLNNINEGVVYQNGRIIVKKE 269

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
             +T     +  +               +AA       +    +       + V  R E 
Sbjct: 270 NSIT-----EIIEGDKIKIPGVHNIENYMAATAATIDYVKPETIARIASSFNGVEHRIEL 324

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-MGKIAL 407
           V   +        Y  + +S              ++I++    G +D+G     MG+I  
Sbjct: 325 VRELNGVKF----YNSSIDSSPSRTIAALKTFKDKVILI---AGGKDKGIPYDSMGEIIT 377

Query: 408 DLAD-IAIVTDDNPRSEDP-------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +    + ++     R E+          +  +I       I      E ++ A     + 
Sbjct: 378 EKVKCLLLIGATASRIEEAYKNYLQQRDLENDI-----KIIHCDTYQEVVQKAHAEAEQG 432

Query: 460 DVLVV 464
           D +++
Sbjct: 433 DCIIL 437


>gi|81428252|ref|YP_395252.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|109892709|sp|Q38XY8|MURC_LACSS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78609894|emb|CAI54941.1| UDP-N-acetylmuranoyl-L-alanine synthetase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 444

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 67/219 (30%), Gaps = 11/219 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY+   +  F+A      ++         + DD     + K  
Sbjct: 164 AYSPDYLIMTNIDFDHPDYYTGIEDVFDAFQSEAYKVQKG---IFAWGDDPE---LRKLK 217

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            NA            F        +   +      +     +  PL GE  V N+L    
Sbjct: 218 SNAPIYYYGTKSNDDFQARNIQRTVEGSEFDAYYHDENIGHYHVPLYGEHNVLNSLAVIA 277

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     ID   V+  L     V  RF           I  DYAH  + ++  L   R   
Sbjct: 278 VSYLEKIDGREVVRELADFKGVKRRFTEKKVA--DVTIIDDYAHHPSEIKATLDAARQKY 335

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD 417
             R IV         +    +M   A   +LAD   +TD
Sbjct: 336 PDRQIVAVFQPHTFTRTI-ALMDDFAASLNLADEVFLTD 373


>gi|29375575|ref|NP_814729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis V583]
 gi|227555103|ref|ZP_03985150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis HH22]
 gi|257418583|ref|ZP_05595577.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T11]
 gi|30179794|sp|O07108|MURD_ENTFA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29343036|gb|AAO80799.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis V583]
 gi|227175771|gb|EEI56743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis HH22]
 gi|257160411|gb|EEU90371.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T11]
 gi|315168041|gb|EFU12058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1341]
 gi|315574263|gb|EFU86454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0309B]
 gi|315581582|gb|EFU93773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0309A]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D       +       +  +              A     ++  + E         +
Sbjct: 218 -AEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|300722060|ref|YP_003711340.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628557|emb|CBJ89129.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
          Length = 491

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 137/424 (32%), Gaps = 57/424 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +V S+A    +    A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVASTAIPADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I  ++GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMISGIYAQAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAVVTNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   KE++ R                 I   +         V+      D   +
Sbjct: 227 AVMCIDDPVVKELIPRIGRYVTTYGFSEEADVRITHYEQKGAQGFFTVS-RQGFPDLHVV 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI+ + +L  L +      RF+F+G  S          
Sbjct: 286 LNAPGCHNALNATAAVAVATEEGINDSAILASLAEFQGTGRRFDFLGDFSLKYINKKEGS 345

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R   + + IV+        R +        +     D+ 
Sbjct: 346 VMLVDDYGHHPTEVDATIKAARAGWTDKRIVMIFQPHRYTRTRDLYDDFANVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVA 465
           ++ D     E P        +   I   G    I   +  + I + +   +   D+++V 
Sbjct: 405 LMLDVYAAGETPIPGADSRSLCRTIRSRGKLDPIFVSDPEQ-ISSILSQFMENNDLVLVQ 463

Query: 466 GKGH 469
           G G+
Sbjct: 464 GAGN 467


>gi|15799772|ref|NP_285784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 EDL933]
 gi|15829346|ref|NP_308119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. Sakai]
 gi|168751402|ref|ZP_02776424.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755696|ref|ZP_02780703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764033|ref|ZP_02789040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168771312|ref|ZP_02796319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776932|ref|ZP_02801939.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781973|ref|ZP_02806980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801515|ref|ZP_02826522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|195939304|ref|ZP_03084686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. EC4024]
 gi|208807723|ref|ZP_03250060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812067|ref|ZP_03253396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818888|ref|ZP_03259208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398858|ref|YP_002268696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325428|ref|ZP_03441512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254791225|ref|YP_003076062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. TW14359]
 gi|291280913|ref|YP_003497731.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|30316080|sp|Q8X9Y9|MURD_ECO57 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12512791|gb|AAG54392.1|AE005185_9 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359548|dbj|BAB33515.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767768|gb|EDU31612.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014554|gb|EDU52676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000408|gb|EDU69394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357000|gb|EDU75419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189359908|gb|EDU78327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365875|gb|EDU84291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376376|gb|EDU94792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727524|gb|EDZ77125.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733344|gb|EDZ82031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739011|gb|EDZ86693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160258|gb|ACI37691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209746564|gb|ACI71589.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746566|gb|ACI71590.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746568|gb|ACI71591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746570|gb|ACI71592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746572|gb|ACI71593.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|217321649|gb|EEC30073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254590625|gb|ACT69986.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760786|gb|ADD54747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190389|gb|EFW65039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320642127|gb|EFX11478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. G5101]
 gi|320647490|gb|EFX16285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. 493-89]
 gi|320652824|gb|EFX21062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. H 2687]
 gi|320658213|gb|EFX25942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663522|gb|EFX30806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320668834|gb|EFX35629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326345192|gb|EGD68935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346954|gb|EGD70688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1044]
          Length = 438

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 134/403 (33%), Gaps = 64/403 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D+                          +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA---DIAIVTDDNPR 421
           S E  L  +     G + ++ G  G   D     R + G          D   +      
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGVQL------ 377

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 +R E+        +     +A+R     +   D++++
Sbjct: 378 ----AALRPEVAE------QTETMEQAMRLLAPRVQPGDMVLL 410


>gi|188994492|ref|YP_001928744.1| UDP-N-acetylmuramate--L-alanine ligase [Porphyromonas gingivalis
           ATCC 33277]
 gi|229620053|sp|B2RIF2|MURC_PORG3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188594172|dbj|BAG33147.1| UDP-N-acetylmuramate-alanine ligase [Porphyromonas gingivalis ATCC
           33277]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 88/281 (31%), Gaps = 25/281 (8%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K      T+   DH+D + T + Y ++       +    +  + Y      +     
Sbjct: 172 HHLKPFMAIITSADPDHMDIYGTAENYRDSFEHFTSLIQSGGALVLKYGAPVNPR----L 227

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVA 318
             +      S   +        +     +   T    G   +     +P    V NA+ A
Sbjct: 228 GSDVSLFTYSSDDRQADYFASDITIRDGRLFFTWHYPGGQLEEVELGVPVHINVENAVAA 287

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +    G+    +   +        RFE V    R   +  DYAH    L+  ++++R 
Sbjct: 288 MAIAHLNGVTVEELRSGIASFKGSHRRFEKVLDTER-VVLIDDYAHHPVELDAAIRSVRE 346

Query: 379 ITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRA 430
           I S + I+         R         +    L D  ++ D  P  E P        I  
Sbjct: 347 IYSRKHIMGIFQPHLYSRTADFYQDFARSLSML-DEVVLLDIYPARELPLPGVTSRLILD 405

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQ---DVLVVAGKG 468
            I +     + K +        ++ L+     DV+++ G G
Sbjct: 406 LIENPNKTLVSKNDL-------LDYLHGNEIPDVVLILGAG 439


>gi|86152077|ref|ZP_01070289.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153554|ref|ZP_01071758.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85840862|gb|EAQ58112.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85843280|gb|EAQ60491.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 313

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 19/113 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++AG+ F        D    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKAGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            QA+ +GA AI+  +  +++D       +     V+N  + L  F        
Sbjct: 48  TQAVKKGAYAIITENDITIED------KDIFYFRVENLEQALVRFLRFFCEDK 94


>gi|300811311|ref|ZP_07091808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497675|gb|EFK32700.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 460

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 116/392 (29%), Gaps = 50/392 (12%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---- 131
            Y     +       PI+         S              + VTG++GK++       
Sbjct: 84  PYENPMVAKASEKGVPIITEPEVALSASE----------SPYVCVTGSNGKTTTVMLTQQ 133

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +    Q+ G  ++ +G          +  L    P  L              + VE SS
Sbjct: 134 IMDHYLQKQGHHAYAVGNIG---WPISEVVLNQAGPDDL--------------LVVEMSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T   Y +AK+ +       +     +    
Sbjct: 177 FQL-MGVTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYFLANFDQKD 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 K                 F   +       ++ + I+           LPG   
Sbjct: 236 ILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEKMMKIAD--------IKLPGIHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA G+   +G     +   L        R ++V T           +    +  +
Sbjct: 288 LQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVTTLDGVKVYNDSKSTNIEAATV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            +++ +        V+   G DR      ++  +       AIVT    R    +  R  
Sbjct: 348 AIQSFKQPE-----VLLAGGLDRGFLFDSLV-DLFKKHV-KAIVTYGETRYLLADAARK- 399

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              GI   +   N  E ++ A ++    DVL+
Sbjct: 400 --AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|290969031|ref|ZP_06560566.1| bifunctional protein FolC [Megasphaera genomosp. type_1 str. 28L]
 gi|290780987|gb|EFD93580.1| bifunctional protein FolC [Megasphaera genomosp. type_1 str. 28L]
          Length = 434

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRP 400
            PGRF+ +    +G  + +D AH    +    +    + S R  + VF    D+     P
Sbjct: 296 WPGRFQVL--QVQGRTVVIDGAHNPAGIHAFCQTYDRVFSKRPRVFVFSVLADKAY---P 350

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M +     AD  +       PR+ DP+++ A +           N   A   A   L +
Sbjct: 351 QMVQELF-HADDIVFCAPAPTPRTADPQQLAALLP---CAATACENLERAWEEAFHALTE 406

Query: 459 QDVLVVAG 466
             VL V G
Sbjct: 407 DAVLCVVG 414


>gi|56964532|ref|YP_176263.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16]
 gi|59798127|sp|Q5WEA8|MURC_BACSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56910775|dbj|BAD65302.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus clausii KSM-K16]
          Length = 435

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 126/417 (30%), Gaps = 55/417 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           I  G + ++VS+AY               L VD   +FL  F  +         +AV+G+
Sbjct: 58  IKNG-QHVIVSAAYGETHEEIKRARELG-LKVDVYPEFLGSFIKQFTS------IAVSGS 109

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+S    +  +      +S+ IG         +    +T       +   +  +    
Sbjct: 110 HGKTSTTGLLAHVLGSVEPTSYLIG-----DGTGKGAANSTYFVFEACEYRRHFLNYSPD 164

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +                      TN+  DH DY ++ +   +A       +  + + 
Sbjct: 165 YCVM----------------------TNIDFDHPDYFKSVEDVVSAFQT----MAKQVNK 198

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           AII   D    + ++         L      +   +K                   F   
Sbjct: 199 AIIACGDDEHLQTLQANVPIVYYGLGDHNDFQAKSIKNTPEGTAFDAWVRGDLFGSFVI- 257

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P  G+  V NAL    LC   GI    ++EHL+    V  RF    +      +  DYA
Sbjct: 258 -PGFGDHNVKNALSVIALCHYEGIGYEDIVEHLKTFAGVKRRFSEKRSG--KQILIDDYA 314

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD--DN 419
           H    +   ++  +     R +          R +       +     AD   + D   +
Sbjct: 315 HHPTEIAATIEATKKKYHDREVTAIFQPHTFTRTKTFLNEFAEALSQ-ADHVYLCDIFGS 373

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKGH-ETVHI 474
            R E       ++   + G        EA I T         VL+  G G  +    
Sbjct: 374 AREEQGSLSIEQLQALVDGAKLLT---EAEIETLKGHGES--VLLFMGAGDIQKYQK 425


>gi|325684350|gb|EGD26519.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 460

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 117/398 (29%), Gaps = 62/398 (15%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV----AS 131
            Y     +       PI+         S              + VTG++GK++       
Sbjct: 84  PYENPMVAKASEKGVPIITEPEVALSASE----------SPYVCVTGSNGKTTTVMLTKQ 133

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +    Q+ G  ++ +G          +  L    P  L              + VE SS
Sbjct: 134 IMDHYLQKQGHHAYAVGNIG---WPISEVVLNQAGPDDL--------------LVVEMSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T   Y +AK+ +       +     +    
Sbjct: 177 FQL-MGVTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYFLANFDQKD 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 K                 F   +       ++ + I+           LPG   
Sbjct: 236 ILTREEKATKAKILTFSENDPAADFYIGQDYLMHGEEKMMKIAD--------IKLPGIHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA G+   +G     +   L        R ++V T           +    +  +
Sbjct: 288 LQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVTTLDGVKVYNDSKSTNIEAATV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD------IAIVTDDNPRSEDP 425
            +++ +        V+   G DR        G +   L D       AIVT    R    
Sbjct: 348 AIQSFKQPE-----VLLAGGLDR--------GFVFDSLVDLFKKHVKAIVTYGETRYLLA 394

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 395 DAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|238898847|ref|YP_002924529.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466607|gb|ACQ68381.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 445

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 131/408 (32%), Gaps = 69/408 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I++S   SL        S   I ++ +   F            P  ++AVTG++GKS
Sbjct: 67  ADVILLSPGISLAHPMLQAASKKGIDIIGDIELFCREI-------PPVPVVAVTGSNGKS 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V Q+ Q +G      G     +      +                       + +
Sbjct: 120 TVTTLVTQMAQTAGWPVSMGGNIGIPALKLLKQK--------------------SRLIVL 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH D +      + A       +      A+I 
Sbjct: 160 ELSSFQLET--THTLAAKAATVLNITEDHADRYPLGLNQYQAAK---LRIYQNAHTAVIN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +   + R              G      ++    +   +  S +         L 
Sbjct: 215 ADDPLT---LPRNGTQKSATKFEVSFGLNQGQYRLHQDGHDFWLQASDQNVLNTKDMKLI 271

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+ I     L+ L +   +P RFE +   +    I    A    
Sbjct: 272 GKHNYLNALAALALADAVDIPREASLKALIEYKGLPHRFEKIFEKNGICWINDSKATNVG 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD--------- 418
           S    +K+++    G + ++ G  G                 AD +I+  D         
Sbjct: 332 STLAAIKSVQ--CQGTLHLLLGGQG---------------KSADFSILQPDLNQNRIQIY 374

Query: 419 --NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +E    +R E+              +A++     L K D +++
Sbjct: 375 CFGQGAETLAALRPEVSQ------RTETLEQAMKLLKSRLKKGDTVLL 416


>gi|227550538|ref|ZP_03980587.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257888564|ref|ZP_05668217.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257897060|ref|ZP_05676713.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227180439|gb|EEI61411.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257824618|gb|EEV51550.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833625|gb|EEV60046.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 511

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 136/410 (33%), Gaps = 55/410 (13%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAG-----WIFVAIVGNKE-----------DGHL 58
           ++   +   +  +R I +V   S H++        +FV +   +            DG+ 
Sbjct: 26  MDGHYLKKYRDLDRNIQDVEYFSGHLKRNMDYSDTMFVCVSPERRSYVNRKVVKWRDGN- 84

Query: 59  FIPQAIAQ----GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
              Q I +    G   IV          +       P  +V+++ KFL   +++L     
Sbjct: 85  --EQIIGKENWFG--VIVTEKPIMDPSVTT------PQFIVEDSWKFLLELSAKLRSCFV 134

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             ++A+TG++GK+S    +  + Q   +  +                 L+ P  + L   
Sbjct: 135 NPVVAITGSAGKTSTRMMITHLLQEEKVLENRGNHNVRFAVPLYMSKLLSNPDVLNL--- 191

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              +S   +      + S+ + Q             T++G  H+   +  +     K ++
Sbjct: 192 --EVSVNALNSYDTGSMSNLIQQD--------IAIVTSIGEAHLSSLKNTKGVAVHKAKI 241

Query: 234 FEELLPKESPAIIYADDAYSKEVM---KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           FE L       I          ++        +   V S+    + + +K++       +
Sbjct: 242 FEGLKQDGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHDASRDVFVKQISQKREYCE 301

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           V +S  G+D      +  E  + N+L A  +   +  + +  ++  E    +P   E   
Sbjct: 302 VLVSFFGEDILLKLAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTI 361

Query: 351 T--NSRGGRIYVDYAHT-----SNSLEMILKNIRTITSGRIIVVFGCGGD 393
               +     ++D  H        +       I+    G  +++ G   D
Sbjct: 362 YTSETGTDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIAD 411


>gi|47097065|ref|ZP_00234636.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           1/2a F6854]
 gi|254898227|ref|ZP_05258151.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           J0161]
 gi|254912280|ref|ZP_05262292.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes J2818]
 gi|254936607|ref|ZP_05268304.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes F6900]
 gi|47014552|gb|EAL05514.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609204|gb|EEW21812.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes F6900]
 gi|293590260|gb|EFF98594.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes J2818]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 110/350 (31%), Gaps = 47/350 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +   +            +   +   +  +   T+  + 
Sbjct: 115 TTGLLSHVVGAIRPTSYLIGDGTGSGTKDAKY-----FALEACEYQRHFLAYKPTYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 169 ---------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K   +        G + +F     +      +      E     F  P  G
Sbjct: 204 GDDAE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V   L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVKRRFSIT--EKGNQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD 417
           +   +   R     + +V         + +  + G   +L+LAD   + D
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCD 369


>gi|23014458|ref|ZP_00054273.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 457

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 120/407 (29%), Gaps = 57/407 (14%)

Query: 68  AEAIVVSSAYSLQDF------SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           A+ +V S                   +N P+  V +    L   A          +LAVT
Sbjct: 66  ADLVVWSPGIPHTHPQPHAIAEKARAANVPV--VCDVE--LLGLAKA-----GTRMLAVT 116

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT+GKS+  + +  +    GL     G   T               + L +         
Sbjct: 117 GTNGKSTTTTLLAHVLAECGLPVAAGGNLGTA-------------ALDLPELPGDGRY-- 161

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                +E SS+ L+      +KL A    N+  DH+  H      + A  R   + L   
Sbjct: 162 ----VLELSSYQLEL--THSLKLGAAILLNITPDHLGRHGGM-NGYIAAKRRVFDFLTPG 214

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
             A+I  DD   + +       G RV+ +  +                      + K+  
Sbjct: 215 GAAVIGVDDGPCRAIAAELERRGLRVVKISVESVLTEGVSAPDGVLLDNGKPVTDLKEI- 273

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
               LPG     NA        A G+    +   L     +  R E VG +     I   
Sbjct: 274 --PSLPGSHNWQNACAVYAAARAEGLSPKDIAAALSTYPGLAHRQELVGEDHGIAWINDS 331

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  ++++E  L     I     I+                G+I    A +         
Sbjct: 332 KATNADAVEKALVCYEHIYW---ILGGQAKEGGIASLERHFGRI--QHAFLI-------- 378

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV---LVVA 465
            E  E   A  + G   +        A+  A  +    D+   +V+ 
Sbjct: 379 GEASEA-FAATLEGKVRYTRCVTLANAVAAARNLAVSDDIPGAVVLL 424


>gi|311281223|ref|YP_003943454.1| UDP-N-acetylmuramate [Enterobacter cloacae SCF1]
 gi|308750418|gb|ADO50170.1| UDP-N-acetylmuramate [Enterobacter cloacae SCF1]
          Length = 457

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 98/363 (26%), Gaps = 44/363 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A       L
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQKQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +       +D    + +     +    V   G+                     
Sbjct: 208 VRIVPGQGRIIWPESDINLKQTLALGCWSEQELVGEQGHWQAKKISTDASEWEVWLDGE- 266

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  + N L+A      +G+      + L        R E  G  +
Sbjct: 267 ----KVGEVKWGLVGEHNMNNGLMAIAAARHVGVQPGDAAQALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L+ +R    G  RII V        +     MG    DL  
Sbjct: 322 NGVAVYDDFAHHPTAILATLQALRGKVGGTARIIAVLEP-----RSNTMKMGVCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM----LNKQDV 461
               AD   +         P+ I  ++       ++  +    + T  +M        D 
Sbjct: 377 SLGRADEVFLLQ-------PQHIPWQVAEVADACVQPAHWSADVDTLADMIVKTAQPGDH 429

Query: 462 LVV 464
           ++V
Sbjct: 430 ILV 432


>gi|290890810|ref|ZP_06553877.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429]
 gi|290479582|gb|EFD88239.1| hypothetical protein AWRIB429_1267 [Oenococcus oeni AWRIB429]
          Length = 435

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 80/272 (29%), Gaps = 15/272 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH DY+++     +A     +     +     Y +D   K++  +        
Sbjct: 167 IITNIDWDHPDYYKSLDDVKSAFSEFADH---VKKIIFAYGEDPEIKKIKPKTARILSYG 223

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                     ++ K              +  DF       G+  + +   A  +   +G 
Sbjct: 224 FEKSDYFCANNIDKRTEGSYFSLSKGGRKLGDFFATIE--GDHGILDTTAAIAVADYLGF 281

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386
               + + L        RF           I  DYAH    ++  +   R    + R++ 
Sbjct: 282 SVDQIQKGLLTYQGAKRRFNISQVA--DLTIVDDYAHHPTEIKATIDAARQKFPNKRLVA 339

Query: 387 VFG-CGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKG 443
           VF      R    +      AL+ AD   +T    + R +       +I+  +P      
Sbjct: 340 VFQPHTYTRVNAFKDEYVN-ALESADKVYITPIFGSLREKAGNAKSEDILDKLPNAGAII 398

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKGH-ETVHI 474
           +   A            VLV  G G  E    
Sbjct: 399 SESNAYDKL--SAEHGSVLVFMGAGDIEKYED 428


>gi|255037241|ref|YP_003087862.1| UDP-N-acetylmuramate--L-alanine ligase [Dyadobacter fermentans DSM
           18053]
 gi|254949997|gb|ACT94697.1| UDP-N-acetylmuramate/alanine ligase [Dyadobacter fermentans DSM
           18053]
          Length = 468

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 80/217 (36%), Gaps = 8/217 (3%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNA 315
           ++ A +   +V +        H + +   + +    +   G         +PG   + N+
Sbjct: 235 LEIADSCKAKVFTYSLNSGLYHSENIRIENARFVFDLVYPGGVIGGIAMKIPGYHNIENS 294

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A+ + + IG+    + E LE    V  RFE      +G     DYAH    +E  L +
Sbjct: 295 IAASAVALYIGVQPTKIREALESYGGVKRRFE-YQLEEKGNVYIDDYAHHPTEIEAFLSS 353

Query: 376 IRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII 433
           ++ +  GR +          R +       +    LAD  +V D  P  E P       +
Sbjct: 354 VKGLYPGRHVTAIFQPHLFTRTRDFADGFAESLS-LADRLLVLDIYPARELPIGGVDSQM 412

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNK--QDVLVVAGKG 468
             +        ++ A    +++L +   D++V  G G
Sbjct: 413 I-LDKVTVADKQLVAKEQVLQLLKELNTDIVVTIGAG 448


>gi|160876819|ref|YP_001556135.1| UDP-N-acetylmuramate [Shewanella baltica OS195]
 gi|160862341|gb|ABX50875.1| UDP-N-acetylmuramate [Shewanella baltica OS195]
 gi|315269021|gb|ADT95874.1| UDP-N-acetylmuramate [Shewanella baltica OS678]
          Length = 463

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 105/355 (29%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I    G    F IG        +     T    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A      
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQKQFN 208

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            L   +  +          A  + +         +      +       K  +    +  
Sbjct: 209 HLVRTVPGEGKIVWPADSHAVKQTI--DMGCWSEQETYHLAESTSGWYGKALSDDCHRFE 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  + NA++A      +G+  +  +E L K      R E +G 
Sbjct: 267 VFFDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   LK +R  +   +I VV     +  + G        ++  
Sbjct: 326 TVNGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMMQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + ++     +  +    +  +    +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVTATAKAGDTIVV 437


>gi|329121232|ref|ZP_08249859.1| tetrahydrofolate synthase [Dialister micraerophilus DSM 19965]
 gi|327470166|gb|EGF15629.1| tetrahydrofolate synthase [Dialister micraerophilus DSM 19965]
          Length = 437

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/387 (13%), Positives = 119/387 (30%), Gaps = 46/387 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTGT+GK SV + + +I + SG+ + +      I    +               + 
Sbjct: 44  KVIHVTGTNGKGSVVAMITKILELSGIKTGRFTSPHLIEYTERFYSCGAYISKEKFAEMY 103

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-------------------- 215
               + V  +  E      +   L  +  +     N+                       
Sbjct: 104 EKVQKAVQIMKEEGHEQPTEFEMLTAMAFLYFKEENVEYTVVEVGMGGLLDSTNVVEPEI 163

Query: 216 ------HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
                  +D+ +       +       ++ ++ P +  A +     + K A     ++  
Sbjct: 164 SVITNVAMDHMKILGKDIKSIAEQKAGIIKEKKPVVTSATNEALSIISKEAEKKHSKIYV 223

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    ++        +  T   E  + +    +P   +  +   A        +++
Sbjct: 224 YNKDFAVDSVEVKNKGQMIKLKTDIKEISEKEQTIEIPLNGKYQSINAAIAWTTVKLLEN 283

Query: 330 ALVLEHLEKL------HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
                  E +       +  GRFE       G  I +D AH     + + + +     + 
Sbjct: 284 KEKRITNESILKGFLSVIWHGRFEI--FEIDGNTIILDGAHNFAGAKTLNETLNQKYKNK 341

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT---DDNPRSEDPEKIRAEIIHGIPGF 439
           + +V+F    D++  K   + K+ +   D            R+ D  K   +        
Sbjct: 342 KRLVIFSSLKDKETQK---ILKLIVRENDTVFFVEAPTKRTRTFDELKKMTD-----SKH 393

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E  N   A+  A+++  K +V++V G
Sbjct: 394 FEMPNVKTALDKALKISGKDNVIIVCG 420


>gi|268608120|ref|ZP_06141848.1| FolC bifunctional protein [Ruminococcus flavefaciens FD-1]
          Length = 422

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/410 (10%), Positives = 99/410 (24%), Gaps = 14/410 (3%)

Query: 58  LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
            ++  A A+G+   +      L       +    ++ V  T      F + +     E  
Sbjct: 8   EYLKAASAKGSILGL-ERVVELLHLMGDPQEKVKVIHVAGTNGK-GSFGAMMTSVLREAG 65

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
               G S  +            + +S  +       ++   +     P+   +  A +Y 
Sbjct: 66  YKTGGFSSPAITDITDSYRINGTEISHEKFTELIGWAAELCEKMDEKPTEFEIMAAAAYE 125

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                                   +                                  +
Sbjct: 126 LFYREGCDIAVIECGMGGDTDATNVVNKPVLSVITNVQSDHCKFLGNTIAEIAAHKAGII 185

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                      D    + V  +A   G     + Y         +  +    +  +    
Sbjct: 186 KEGCPVFFGGDDAEAFEVVSAKAREVGAPFRFMDYSDVSGVRFSLDGMEFDYKDKLYKVP 245

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
               +           + ++          D    L   E      GRFE +        
Sbjct: 246 LLGVYQLNNALNVIFCSEILTKKGYNIDYGDIRRGLAKTEW----HGRFEMLRREPY--- 298

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRDQGKRPIMGKIALDLADIAI-V 415
           +  D AH  + +    ++I      + + +  G   D+D      M     + A     V
Sbjct: 299 VIFDGAHNPDGIRFASESIERYFGRKKVAMLIGVMADKDYRLYSEM---LGNHAAKVFTV 355

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             DNPR+ D   +                  + +++A E    +++ ++A
Sbjct: 356 KPDNPRALDSASLAKVFSEKNISAESFDVLADGVKSAYEYAKSRNIPLIA 405


>gi|296120286|ref|YP_003628064.1| Mur ligase middle domain protein [Planctomyces limnophilus DSM
           3776]
 gi|296012626|gb|ADG65865.1| Mur ligase middle domain protein [Planctomyces limnophilus DSM
           3776]
          Length = 569

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 74/445 (16%), Positives = 127/445 (28%), Gaps = 55/445 (12%)

Query: 70  AIVVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            I+ S+A    D    A   +  P +        L+         +    L + GT GKS
Sbjct: 120 LIIHSAAIPPADAGLQAARLAGIPAIP---YHIALAHL------INSSRSLCIAGTHGKS 170

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISS----FAQDNRLTTPSPIYLAKALSYLSSQGVT 183
           +  + V  +   S          +T       F     L  P P+           +  +
Sbjct: 171 TTTAMVAWMLSSSLAPEITDSIVNTNHPWRASFIMGGELIAPLPLSKPDQAMATLHRSGS 230

Query: 184 HVS---VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
           +V    + A +    QH L   +    +  +   DH D   ++  + +A  +    + P 
Sbjct: 231 YVEGDWLVAEACEYRQHFL-AYEPELAAILSCEPDHFDCFASEAEFGDAFSKFAARVKPD 289

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRV----LSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  A D+           A        +       +   +        +       
Sbjct: 290 GRLVT--AADSPMALQAAENAQAQVETFGLSMGNAKYPHWQARQIQRLGAKSRFELFYCG 347

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                    +PG   + NAL A  L    G      ++ L     +  RFE      RG 
Sbjct: 348 KHRASVQLQIPGRHNILNALAALALTEQTGCPLPHRIQALASFQGIRRRFE-WKGLWRGI 406

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAI 414
            +  DYAH   ++   L+  R I   R I +        R Q   P   +    LAD   
Sbjct: 407 HLIDDYAHHPTAVIETLRTARQIFGSRRIALAFEPHQVSRLQALLPEFAQSLA-LADQVF 465

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA---------IEMLNKQ------ 459
           +         P     E    +   +   +  + +R+A         ++ L         
Sbjct: 466 I--------APVFAAREGNSALKHTL-IQDLAQRVRSAGIPTEVCGTLDHLRSSVEHKAG 516

Query: 460 --DVLVVAGKGHETVHIVTNGEKKM 482
             DVL+ AG GH          +  
Sbjct: 517 TIDVLITAGAGHIDRIHYELSRRIP 541


>gi|157415104|ref|YP_001482360.1| hypothetical protein C8J_0784 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386068|gb|ABV52383.1| hypothetical protein C8J_0784 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747745|gb|ADN91015.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931153|gb|EFV10126.1| hypothetical protein CSU_1611 [Campylobacter jejuni subsp. jejuni
           327]
          Length = 313

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++AG+ F        D    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKAGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ +GA AI+  +  +++D       +     V+N  + L  F            L  
Sbjct: 48  TQAVKKGAYAIITENDITIED------KDIFYFRVENLEQALVRFLRFFCEDKECEFLLF 101


>gi|78187611|ref|YP_375654.1| folylpolyglutamate synthetase [Chlorobium luteolum DSM 273]
 gi|78167513|gb|ABB24611.1| Folylpolyglutamate synthetase [Chlorobium luteolum DSM 273]
          Length = 443

 Score = 47.6 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 23/175 (13%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYV 360
             P+ G F       A  +    G+    V E L+ L      GR E +G        ++
Sbjct: 263 RVPVTGAFHAPGIATAVAVAEDAGVGPEAVREGLDALASTGYRGRLELLGHRPD---TFL 319

Query: 361 DYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQG--KRPIMGKIALDLADIAIVT 416
           D +H ++ +   +  +           V+FG   D+D     R +M ++    A     T
Sbjct: 320 DVSHNADGMRATVDALMPFLSRYRDARVLFGLVSDKDSESMIRELM-RLRCRFA-----T 373

Query: 417 DDNP-----RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              P      SE+  +I   +       +   +  EA++   E  +   ++++ G
Sbjct: 374 TGLPSERGVASEELAEICRGLGA---EAVAFSSPPEALQFLREEASPDSLILITG 425


>gi|296110340|ref|YP_003620721.1| folylpolyglutamate synthase [Leuconostoc kimchii IMSNU 11154]
 gi|295831871|gb|ADG39752.1| folylpolyglutamate synthase [Leuconostoc kimchii IMSNU 11154]
          Length = 431

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMG 403
           R +   T     RI  D AH  +++  +++ +     + + ++V G   D++      M 
Sbjct: 293 RMQIDHT----QRILWDGAHNIDAVHALIETLNDWHLTTKPLLVLGVLNDKNYRNMIDM- 347

Query: 404 KIALDLADIAI-VTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
              L +    I VT +NPR+     +   I    I   +   +   A+ TA ++  K   
Sbjct: 348 --LLPMVSQVITVTPENPRALSANDLAEAIHEQVISMPVTVASPESALHTANQLREKNQY 405

Query: 462 LVVAG 466
           ++VAG
Sbjct: 406 IIVAG 410


>gi|307289405|ref|ZP_07569359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0109]
 gi|306499660|gb|EFM69023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0109]
 gi|315165142|gb|EFU09159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1302]
          Length = 456

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D       +       +  +              A   + ++  + E         +
Sbjct: 218 -AEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLEGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|256020074|ref|ZP_05433939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella sp.
           D9]
 gi|300821907|ref|ZP_07102051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|309796078|ref|ZP_07690490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331666325|ref|ZP_08367206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331680662|ref|ZP_08381321.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332281224|ref|ZP_08393637.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
 gi|300525507|gb|EFK46576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|308120320|gb|EFO57582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331066536|gb|EGI38413.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331072125|gb|EGI43461.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332103576|gb|EGJ06922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
          Length = 438

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|213163170|ref|ZP_03348880.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 517

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 95/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 109 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 166 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 210 QFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDTSEWEVW 269

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 270 LDGEKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 328

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 329 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 383

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 384 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV 439


>gi|191167754|ref|ZP_03029561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
 gi|190902180|gb|EDV61922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
          Length = 438

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|238020748|ref|ZP_04601174.1| hypothetical protein GCWU000324_00638 [Kingella oralis ATCC 51147]
 gi|237867728|gb|EEP68734.1| hypothetical protein GCWU000324_00638 [Kingella oralis ATCC 51147]
          Length = 803

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 106/374 (28%), Gaps = 27/374 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL-- 170
               ++ V GT+GK S  +F+  I   +G     +     +    +    + P       
Sbjct: 39  PSCPVIIVGGTNGKGSTCAFLSHIYAAAGYKVGTLTSPHLLRFNERIAINSQPVSDEDIV 98

Query: 171 -------AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI---AGSFTNLGRDHIDYH 220
                  A       +    +         L Q  +  +++         N         
Sbjct: 99  AAFERIEAARGDVSLTYFEFNTLAAVDIFRLHQVDVMILEVGLGGRLDAVNAFDADCAIV 158

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG-----YQGK 275
            +      A +    E + KE   I  A            H+ G    ++G        +
Sbjct: 159 TSVDLEHQAYLGDTVEQIAKEKAGIFRAGKPAIFGQDPAPHSLGQHAKNIGAKLLQLNHQ 218

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           F +L ++ +   +   +          L           A+ A  +       S   L  
Sbjct: 219 FSYLTRIDSWQWQANNSSLKIDLPLPALQGPFQFNNAACAVAAVQIMRQQLPVSNEALAQ 278

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
                    RF+ +        I +D AH  ++   +  ++  + + R I VF    D+D
Sbjct: 279 GIAQAQNTARFQIIQRQPE---IILDVAHNPHAARALASSLNALPAKRTIAVFSILADKD 335

Query: 396 QG--KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG-IPGFIEKGNRIEAIRTA 452
                  + G I        I   D PR      + A++    I           A   A
Sbjct: 336 SDAVINTLQGSIDEWY----IAPLDLPRGMTLTALTAKLKKHDIQPIHPYNTIQAAYTAA 391

Query: 453 IEMLNKQDVLVVAG 466
           +  + + D ++V G
Sbjct: 392 LSQVTENDRIIVFG 405


>gi|222151005|ref|YP_002560158.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
 gi|254766053|sp|B9EB51|MURD_MACCJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222120127|dbj|BAH17462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
          Length = 445

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 114/347 (32%), Gaps = 42/347 (12%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           L +TGT+GK++V S +  + +    +    G    ++S                      
Sbjct: 114 LGITGTNGKTTVTSLIGDMFKAHEHAGLLCGNIGFVASKV------------------AQ 155

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
           ++     + +E SS  L    +   +      TN+   H+DYH  QQ Y +AKM++ +  
Sbjct: 156 NAGAHDTLVMELSSFQL--MGIQEFRPHIALITNIYSAHLDYHGNQQNYIDAKMQITKNQ 213

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             ++        +   + +++  +     V     +           ++   +  I V+ 
Sbjct: 214 TSEDYLIF----NDKQRTLLQNYNIKSKVVYFSTDEKVEGAYIDQNKVYFYDEFIIDVKD 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                    PG   + N L +       GID+  + + L+    +  R +FV        
Sbjct: 270 IVL------PGVHNLENVLASIAAAKLAGIDNIHICDTLKTFEGIKHRLQFVTETDGVKY 323

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                A  + +    L +    T          G DR  G   +   I  D      +  
Sbjct: 324 YNDSKATNTLATSFALDSFHQPTH-----WLAGGLDRGNGFEELDTHI--DHVKHMYI-- 374

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                E  EK+ A        +    +  +A+      + + +V+++
Sbjct: 375 ---FGETTEKLTAFAAQHHIPYTICKDVTDAVLKTASYVERGEVVLL 418


>gi|220928872|ref|YP_002505781.1| FolC bifunctional protein [Clostridium cellulolyticum H10]
 gi|219999200|gb|ACL75801.1| FolC bifunctional protein [Clostridium cellulolyticum H10]
          Length = 424

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 54/138 (39%), Gaps = 16/138 (11%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRP 400
            PGR E     ++   + +D AH     + +   + +  T  + I V G   D+D     
Sbjct: 291 WPGRLEI---INKNPLVLIDGAHNLEGGQALNTALDKYFTQKKKIFVVGFLRDKDYIGIM 347

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M     + AD  I VT +N R+    ++   +       ++  +    ++TA+ + + +
Sbjct: 348 DM---LGNKADTIITVTPNNERAVPSAELAEILKSYSNHVVDGMSIENGLQTAVGLADSE 404

Query: 460 DVLVVAG--------KGH 469
            V+   G        +GH
Sbjct: 405 SVICAFGSLYMIGEIRGH 422


>gi|82542692|ref|YP_406639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii Sb227]
 gi|193065871|ref|ZP_03046932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|193070830|ref|ZP_03051763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194429374|ref|ZP_03061899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218693557|ref|YP_002401224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 55989]
 gi|260842324|ref|YP_003220102.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|260853301|ref|YP_003227192.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|260866241|ref|YP_003232643.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|293476748|ref|ZP_06665156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|307311461|ref|ZP_07591103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|118595690|sp|Q326E7|MURD_SHIBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81244103|gb|ABB64811.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella boydii
           Sb227]
 gi|192926458|gb|EDV81091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|192955860|gb|EDV86330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194412594|gb|EDX28891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218350289|emb|CAU95972.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           55989]
 gi|257751950|dbj|BAI23452.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|257757471|dbj|BAI28968.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|257762597|dbj|BAI34092.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|291321201|gb|EFE60643.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|306908440|gb|EFN38938.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|315059311|gb|ADT73638.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           W]
 gi|323157845|gb|EFZ43948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EPECa14]
 gi|323160114|gb|EFZ46075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E128010]
 gi|323171251|gb|EFZ56899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LT-68]
 gi|323176396|gb|EFZ61988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1180]
 gi|323181785|gb|EFZ67198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1357]
 gi|323380131|gb|ADX52399.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           KO11]
 gi|323945717|gb|EGB41765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H120]
 gi|324118438|gb|EGC12332.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1167]
 gi|332098911|gb|EGJ03862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           3594-74]
          Length = 438

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|283456382|ref|YP_003360946.1| folylpolyglutamate synthase/Dihydrofolate synthase [Bifidobacterium
           dentium Bd1]
 gi|283103016|gb|ADB10122.1| folC Folylpolyglutamate synthase/Dihydrofolate synthase
           [Bifidobacterium dentium Bd1]
          Length = 506

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + T+     I +D  H  N+ E +   I       +++ V    GD+       
Sbjct: 302 PGRLEQIRTSPT---IILDGGHNVNAAEALRAAIEENYDFQQLVGVIAMMGDKQVE---E 355

Query: 402 MGKIALDLADIAIVTDDNPRS-----EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              +   L    IVT+++ R      ED +KI  ++  G           +AI+ A+ M+
Sbjct: 356 YLGVLEPLLSHVIVTENSWRDRVMPAEDLKKIADQVF-GPERVTCIPQLPDAIQEAVNMV 414

Query: 457 NKQD--------VLVVAG 466
           + +D         +++ G
Sbjct: 415 DSEDELGVGYGHGVLICG 432


>gi|326561546|gb|EGE11889.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis 7169]
          Length = 486

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 114/366 (31%), Gaps = 41/366 (11%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A+ +VVSSA   Q+          I VV   R+   L       +G      +AV G  G
Sbjct: 83  ADVVVVSSAIDRQNPEIQAALKAHIPVV---RRADMLGELMRYRHG------IAVAGAHG 133

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S +  +   +GL                           L  +    +     ++
Sbjct: 134 KTTTTSLLTMMLTEAGLDPTY--VIGGK----------------LNASGKNAALGASRYL 175

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA            ++ +A   TN+  DH++ ++            F   +P    A+
Sbjct: 176 VAEADESDAS---FLSLRPMACVVTNIDEDHMETYEGSFDKLKQAYVQFLHNMPFYGLAV 232

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD     ++            +        +  +          +  + K       
Sbjct: 233 LCGDDKELYAMIDDIAR-PVITYGLEKHNDVQAVDVIADGTKTHFTVLRKDKKPLPITLN 291

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----RGGRIYV 360
           +PG   VYNAL A  +    G+    + + +EK   V  RFE  G+           +  
Sbjct: 292 IPGIHNVYNALGAITMATDEGVSDKAICQAVEKFAGVGRRFENNGSYPLTDGSGDVVLID 351

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDD 418
           DY H    + M +K  R     R  +V      R    R    +    L+  D  I+ D 
Sbjct: 352 DYGHHPTEIAMTIKAARQSYPDRR-LVMMFQPHRYSRTRDCFSEFVNVLSQVDKLILLDV 410

Query: 419 NPRSED 424
               E+
Sbjct: 411 YSAGEE 416


>gi|258647731|ref|ZP_05735200.1| UDP-N-acetylmuramate--alanine ligase [Prevotella tannerae ATCC
           51259]
 gi|260852574|gb|EEX72443.1| UDP-N-acetylmuramate--alanine ligase [Prevotella tannerae ATCC
           51259]
          Length = 460

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 98/298 (32%), Gaps = 34/298 (11%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             ++  A   T+   DH+D + T++AY  +       + P  +  +            K 
Sbjct: 175 HHLQPYASVITSTDPDHLDIYGTKEAYLESFTHYTSLIRPDGALIVHKNLK------FKE 228

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVA 318
           A   G R    G      H + +     +    +     +  +    +P    + N + A
Sbjct: 229 APPTGTRRFDYGRDAGDFHAENIRIGGGRVCFDLISPLGNISEIELGVPVSINIENGIAA 288

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L    G     + E ++    V  RF+F    S    +  DYAH    +   + ++R 
Sbjct: 289 IALAQIAGATPDEIREGMKTFQGVDRRFDF-KMKSDKVVLLSDYAHHPAEVRQSILSVRE 347

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDPEK------IRA 430
           +  GR I          +  R    + A  L+  D  I+ D  P  E P +      I  
Sbjct: 348 VFDGRRITGIFQPHLYTRT-RDFYREFAESLSLLDEVILLDIYPARELPIEGVSSKLIYD 406

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-------------ETVHIV 475
            +   +   +       A+   ++   + DV++V G G              E  +I+
Sbjct: 407 HLRADMKKHLCD---KSALLPLLKQ-EETDVVMVLGAGDVDAMVPQIAQMLKEKYNII 460


>gi|331085575|ref|ZP_08334659.1| hypothetical protein HMPREF0987_00962 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407462|gb|EGG86964.1| hypothetical protein HMPREF0987_00962 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 432

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 51/395 (12%), Positives = 122/395 (30%), Gaps = 45/395 (11%)

Query: 89  NTPILVVDN----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
           + P   V N    T++FL    +   G+    ++ V GT+GK SV +++Q +       +
Sbjct: 12  DIPKFTVKNHLTHTKEFLLRLGNPQVGR---KVIHVAGTNGKGSVCAYIQALLLAEKKRT 68

Query: 145 FQIGPTSTISSFAQDNRL-----------------TTPSPIYLAKALSYLSSQGVTHVSV 187
                   +    +                     TT   +           + +  +++
Sbjct: 69  GFFSSPHLVKINERIRINGEEIDDETFLAVFQKVKTTVDEMEKDGLAHPTFFEFLFGMAM 128

Query: 188 EASSHGLDQ---------HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            A +    +          RLD    I      +       H         K+   +  +
Sbjct: 129 TAFAMADMEYIVLETGLGGRLDATNAIDDPVLTVITAVGMDHMEILGDTIEKIAAEKGGI 188

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
            K    +++  +      + R     C             ++++   +       + +  
Sbjct: 189 IKRQVPLVFDGNNVQAAAVFRQIAENCGAPCRKITKDAYEIQEITEKYIAFSKRSAYDED 248

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
               L            L    + + +      + +        PGR E +        +
Sbjct: 249 TTWRLSNTGCYQVDNALLALEAVQLLLPKRHPKLWKDTLFHVKWPGRMEEILPG-----V 303

Query: 359 YVDYAHTSNSLEMILKNI--RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAI 414
           Y+D AH  N++E  ++ +  R +  GR +++F    +++  K  ++ ++  +L+     I
Sbjct: 304 YIDGAHNENAVERFVETVKRRPVHGGRTVILFSAVKEKEYEK--MIAELCQNLSVDSYVI 361

Query: 415 VTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEA 448
            T ++ R  D  ++   +          +    EA
Sbjct: 362 TTVESTRKVDAGELARIVRKYTDSEVTVREQLEEA 396


>gi|171742531|ref|ZP_02918338.1| hypothetical protein BIFDEN_01644 [Bifidobacterium dentium ATCC
           27678]
 gi|171278145|gb|EDT45806.1| hypothetical protein BIFDEN_01644 [Bifidobacterium dentium ATCC
           27678]
          Length = 518

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + T+     I +D  H  N+ E +   I       +++ V    GD+       
Sbjct: 314 PGRLEQIRTSPT---IILDGGHNVNAAEALRAAIEENYDFQQLVGVIAMMGDKQVE---E 367

Query: 402 MGKIALDLADIAIVTDDNPRS-----EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              +   L    IVT+++ R      ED +KI  ++  G           +AI+ A+ M+
Sbjct: 368 YLGVLEPLLSHVIVTENSWRDRVMPAEDLKKIADQVF-GPERVTCIPQLPDAIQEAVNMV 426

Query: 457 NKQD--------VLVVAG 466
           + +D         +++ G
Sbjct: 427 DSEDELGVGYGHGVLICG 444


>gi|329667558|gb|AEB93506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii DPC 6026]
          Length = 460

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 120/393 (30%), Gaps = 52/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y         + + P++            A  +        + VTG++GK++     Q+
Sbjct: 84  PYENPMVEKAEKLDIPVITEP-------EIALNVSEAP---YVCVTGSNGKTTTVMLTQR 133

Query: 136 IC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      ++G  ++ +G      S   + + T+   + +                 E SS
Sbjct: 134 IMDHNLSKNGGHAYAVGNIGVPISEVVE-KATSKDLLVV-----------------EMSS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T   Y  AK+++ +     +     +    
Sbjct: 176 FQL-LGVTDIKPKVAAIVDIYNNVHLDYHKTFDNYVEAKLKITQSQDQDDYFIANF---D 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K       +V +     K             +     ++  D      +PG   
Sbjct: 232 QKNILEKELDKTKAKVQTFSETDKTADYFIGDEYLESKDDHHIMKISDI----KIPGIHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N LVA  +   +G D++ +   L        R ++V T +         +    +  +
Sbjct: 288 QQNCLVAIAISKLMGADNSDIQYALSTFTGATHRLQYVMTYNDRKIYNDSKSTNIEAATV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +        ++       E    +   
Sbjct: 348 AIPSFKEPE-----VLIAGGLDRGFMFDSLVP-LFKKHVKSIVL-----YGETKYLLADA 396

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A E+    DV++
Sbjct: 397 ARKAGIKDIVIVNTLQEAVPRAYELSEAGDVIL 429


>gi|291547126|emb|CBL20234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           SR1/5]
          Length = 451

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 105/298 (35%), Gaps = 18/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I  A     L  +  +    E SS  L+   +D  +    +  N+  DH++ H T + Y 
Sbjct: 144 IGTAYTSKSLEMREDSVTVAEISSFQLET--IDQFRPKVSAILNITEDHLNRHHTMEEYI 201

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
             K  + +   P++   + Y +D   ++  +          S+    + I+L     I  
Sbjct: 202 RVKELITKNQGPEDVCVLNY-EDEVLRKFGENIVPKVVYFSSLRKLDQGIYLDGDQIILK 260

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            ++  I +   +      + G     N + AA +    G+    + + + +   VP R E
Sbjct: 261 TEKEEIPIVKTE---ELKILGRHNHENVMAAAAMAYYAGVSVESIRKSVCEFVAVPHRIE 317

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
           +V   +             ++    ++        R  ++ G G D++      +     
Sbjct: 318 YVTEKNGVAYYNDSKGTNPDAAIKGIQA-----MNRPTLLIGGGYDKESSYDEWIESFDG 372

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + ++       +  EKI+A     G    I   +  EA+R   E  N  D +++
Sbjct: 373 KVRYLVLI------GQTKEKIKAAAERLGFTDIILCEDLKEAVRVCAEKANPGDAVLL 424


>gi|167855430|ref|ZP_02478195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parasuis 29755]
 gi|167853424|gb|EDS24673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parasuis 29755]
          Length = 462

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 79/281 (28%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P+    +    
Sbjct: 167 SAFFDKRSKFVHYNPKTLIINNIDFDHADIFDDLKAIQR-QFHHLIRTMPQNGCILSATS 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  + +          L                + K  +  + L G 
Sbjct: 226 DENVQNTLKMGCYSEQQFIGQDQDWYAEPLSS----DYSHFAIYHKQQKAGEVKWNLLGA 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++N L+A       G+        L        R E  G    G  +Y D+AH   ++
Sbjct: 282 HNMHNGLMAIAAAHHAGVSVEQACLGLNSFINANRRLEVKG-EVNGITVYDDFAHHPTAI 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDL--ADIAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  L  AD   V   +    
Sbjct: 341 LATIDALRGKVGKEQRILAVLEPRSNTMK---MGVHKEEIAPSLKDADAVFVYQPDTIPW 397

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E +   ++     D ++V
Sbjct: 398 QVSTITDALSQPAQWST---SLDELVELIVKEAKPTDHILV 435


>gi|325125488|gb|ADY84818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 460

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 117/398 (29%), Gaps = 62/398 (15%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS---- 131
            Y     +       PI+         S              + VTG++GK++       
Sbjct: 84  PYENPMVAKASEKGVPIITEPEVALSASE----------SPYVCVTGSNGKTTTVMLTQQ 133

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +    Q+ G  ++ +G          +  L    P  L              + VE SS
Sbjct: 134 IMDHYLQKQGHHAYAVGNIG---WPISEVVLNQAGPDDL--------------LVVEMSS 176

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T   Y +AK+ +       +     +    
Sbjct: 177 FQL-MGVTDIEPKVAAIVDIYNNVHLDYHKTFDNYVDAKLNVGRFQKASDYFLANFDQKD 235

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 K                 F   +       ++ + I+           LPG   
Sbjct: 236 ILAREEKATKAKILTFSENDPVADFYIGQDYLMHGEEKMMKIAD--------IKLPGIHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + N+LVA G+   +G     +   L        R ++V T           +    +  +
Sbjct: 288 LQNSLVAIGISSLMGAGKDDIAAVLSTFTGAEHRLQYVTTLDGVKVYNDSKSTNIEAATV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD------IAIVTDDNPRSEDP 425
            +++ +        V+   G DR        G +   L D       AIVT    R    
Sbjct: 348 AIQSFKQPE-----VLLAGGLDR--------GFVFDSLVDLFKKHVKAIVTYGETRYLLA 394

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           +  R     GI   +   N  E ++ A ++    DVL+
Sbjct: 395 DAARK---AGIKTIVVVDNLHEGVKAASKLAEAGDVLL 429


>gi|309775628|ref|ZP_07670628.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916722|gb|EFP62462.1| UDP-N-acetylmuramate--alanine ligase [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 434

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 92/270 (34%), Gaps = 19/270 (7%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q             TN+  DH+DY++  + Y NA    FE    +    ++   D  +  
Sbjct: 155 QRHFLAYTPEYAIITNIELDHVDYYKDMEDYCNA----FETFANQIQKGVVLFGDDAAVR 210

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++            +        +      +  Q   +  +     F  P  G+  ++N+
Sbjct: 211 LL--HVKTPHLYYGLQDDNDVQAVHIQQNENGMQFDVLYHKELFGHFELPFVGKPLLWNS 268

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    + I  G+ + L+ E L+    V  RF      +       DYAH   +++ +++ 
Sbjct: 269 LGVIAVGIMEGLSAQLLQEGLQSFPGVKRRF--TIEENGDNVYIDDYAHHPTAVKYMIEA 326

Query: 376 IR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVT--DDNPRSEDPEKI-R 429
            R      ++I +F    DR       M + A +L  AD   +    +N   E+   I  
Sbjct: 327 ARIKYPGKKVIALFKP--DRYSRIYYFMDRFAQELDQADEVYLCHFPENAAKEEGIDITI 384

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            ++           N  EA   A  +  + 
Sbjct: 385 YDLADKCKKAEVI-NEDEA--AAKLLAQRG 411


>gi|238893068|ref|YP_002917802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545384|dbj|BAH61735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 438

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIE--------LFCREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDTDREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TFSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTCVVNADD 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A     +   +R  + G  V       +               + +  E        PL 
Sbjct: 216 ALTMPVRGADERCISFGVDVGDYHLNRQQGETW----------LRVKGEKVLNVKEMPLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVQEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  ++    G + ++ G  G   D    KR + G       D   +        +
Sbjct: 326 STEAALNGLQL--DGTLYLLLGGDGKSADFTPLKRYLGG-------DRIRLYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPEV------AVQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|227548728|ref|ZP_03978777.1| possible tetrahydrofolate synthase [Corynebacterium lipophiloflavum
           DSM 44291]
 gi|227079195|gb|EEI17158.1| possible tetrahydrofolate synthase [Corynebacterium lipophiloflavum
           DSM 44291]
          Length = 502

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 19/137 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V         ++D  H  +    +   +       R+I V G  GD+D      
Sbjct: 356 PGRLERVRATPT---TFIDATHNPHGARALADALANDFDFTRLIGVLGVLGDKDATG--- 409

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEML-- 456
           +      +    ++T + +PR+ D  ++        G           +A   A+E+   
Sbjct: 410 ILAALEPVFTEVVITQNTSPRAMDAYELAELAREIYGDERVHVVTRLADAYELAVELAED 469

Query: 457 -------NKQDVLVVAG 466
                       +V+ G
Sbjct: 470 ALAEVGVQSGSGVVITG 486


>gi|108804371|ref|YP_644308.1| FolC bifunctional protein [Rubrobacter xylanophilus DSM 9941]
 gi|108765614|gb|ABG04496.1| FolC bifunctional protein [Rubrobacter xylanophilus DSM 9941]
          Length = 409

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 10/151 (6%)

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
               +  G              ++PGRFE          +     H    +E  L+ +R+
Sbjct: 251 VAGELLGGEVPDAGRVARRVPGLLPGRFEVHRLGGVPVVVDG--GHNPEGIEAALRAMRS 308

Query: 379 ITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGI 436
              GR + VVFG   D+D G    M       A + ++      R+ DP+ +R E   G+
Sbjct: 309 AYGGRPLAVVFGVLRDKDIG---SMLVPVRREAGLLVLARPGEERAADPDWVRREF--GL 363

Query: 437 PGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
                     EA+  A  EM  +  V++V G
Sbjct: 364 REARVVPEVGEAVELAAGEMSGRGGVVLVTG 394


>gi|297539796|ref|YP_003675565.1| UDP-N-acetylmuramate [Methylotenera sp. 301]
 gi|297259143|gb|ADI30988.1| UDP-N-acetylmuramate [Methylotenera sp. 301]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 70/209 (33%), Gaps = 9/209 (4%)

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           +         ++ Y G     +        +   +    +  +  + + GE    NAL  
Sbjct: 235 QRVIDKGCWSNLEYFGSADGWEVQNVDAQGRFDVVFKGERQGNLSWDILGEHNRMNALAV 294

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 +G+   + +E L +   V  R E  G       +Y D+AH   +++  +  +R+
Sbjct: 295 IAAARHVGVAPCIAIEALSEFKNVKRRMEIKGV-VNDITVYDDFAHHPTAIDTTVAGLRS 353

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
              G+  ++       +  K  +M      +L  AD+      N    D  +  + I   
Sbjct: 354 -KVGKARILAVLEPRSNTMKLGVMKNALPASLKEADLVFCYGANLGW-DAAEALSTIKDK 411

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +    + AI  A       D ++V
Sbjct: 412 ASVYEDLNTMVAAIAKA---AKPGDYVLV 437


>gi|262037265|ref|ZP_06010747.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
 gi|261748737|gb|EEY36094.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 106/331 (32%), Gaps = 43/331 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A +   K    +++ TGT+GK++  + + ++ + +G +    G      +    +   
Sbjct: 81  DLAYKYMDK-KIKVISFTGTNGKTTTCTKMYELLEFAGYNVKLAGNAGYSFAKLVGDE-- 137

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
              P+               ++ +E SS+ L+      I        NL  DH+  + + 
Sbjct: 138 --EPLD--------------YIVLELSSYQLEND--PQIHSYIAGIINLTPDHLTRYNSV 179

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR---------------VL 268
           + Y+  K  +F++   K+  A+I  DDA  + + +R                       +
Sbjct: 180 EEYYITKFDIFQK-QNKDDFAVINLDDAEFERLCEREEIQNKIKAEKVYLSTEKKGTVFV 238

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                    +LK     +  ++     E         L G+  + N L        + I 
Sbjct: 239 FEDNIYIMKNLKDRIDCYADEETEKVAEKLISVKDLSLKGKHNLENMLFLISGAKILNIP 298

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              + E L+    +  R E          I         S    + +       + I++ 
Sbjct: 299 DEKIKEFLKTTKALEHRLENFFVKENTVFINDSKGTNVESTLKAIDSFE-----KPIILI 353

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDN 419
             G D+      ++ KI     +   +  DN
Sbjct: 354 CGGDDKKISNDELIKKIKEK-VEFVYLIGDN 383


>gi|42520363|ref|NP_966278.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|48428303|sp|P61683|MURC_WOLPM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|42410101|gb|AAS14212.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 498

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 139/411 (33%), Gaps = 27/411 (6%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V SSA    +    A   +N  +L   +    L+           + ++AV+G+SG
Sbjct: 86  AQIVVHSSAIEFDNVELIAAKNNNKTVLHRSDI---LAEIMK------GKYVIAVSGSSG 136

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I   SG+ +        ++S+  + +L       +    S  +   +   
Sbjct: 137 KTTTTAMIASIFDHSGIDATVT-VGGILNSYKSNFKLGGSDTFLIEADESDGTMLKIPAK 195

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
               +S   D     G      +  +   ++        +               E+ +I
Sbjct: 196 IAVITSINNDHIDYYGTFDNIKNAFSQFVNNAGSAVLPDSVDIDYDAGNSITFGFENGSI 255

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
             ++       ++                K    +          VT+         L  
Sbjct: 256 RASNIKQHANSIEFDVLNNWIPALRAGMTKGKCTEMSSQC-----VTLGSSPLKNIVLSN 310

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
             G  +V NAL A  + I +GI  A + + L +   V  RF  +     G ++  DYAH 
Sbjct: 311 AIGIHKVSNALAAISVAIKLGISDADIKKGLLEFQGVARRFSLIADIK-GVKLIEDYAHH 369

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            N +   L   R+IT G++I +       R +       +I   + D  I+T  +P  + 
Sbjct: 370 PNEIYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRI-FMMFDYVILTPVHPPEDK 428

Query: 425 P------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
           P      + I+  +I       +  N    I   I    +  ++++  G G
Sbjct: 429 PIPGCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSNIVLFIGAG 479


>gi|227488530|ref|ZP_03918846.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091424|gb|EEI26736.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 491

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 71/442 (16%), Positives = 124/442 (28%), Gaps = 73/442 (16%)

Query: 70  AIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
            +V S A   +D    + +     P++   +    L               + + GT GK
Sbjct: 62  VVVTSFAAIPKDNPELVAARELGIPVIRRSDLLAELMK---------DRIQVLLAGTHGK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           +S  S      Q++GL          ++    +    T          S  S        
Sbjct: 113 TSTTSMAVVAMQQAGLD-PSFAIGGQLNKAGTNAHDGTGRAFVAEADESDAS-------- 163

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                       L          TN+  DH+D+ +T + YF         +       + 
Sbjct: 164 ------------LLSYAPDVAVVTNIEPDHLDFFKTPEKYFEVFDSFAAVVAENGGELVA 211

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK--------KVCAIHNKQQVTISVEGK 298
             +D ++  + + A              +   +          + A  +   + + V G 
Sbjct: 212 CVEDEHALALARTAPGTVYGYGFAATLVENPTITPLVAVDEVTLTAYGSVATMHVHVPGG 271

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIG------------IDSALVLEHLEKLHVVPGRF 346
           D   +         +  L AA    A                   +   +     V  RF
Sbjct: 272 DVVPVEVTVRTPGTHMVLNAAAALGATFLASNRENGTFDATTLNQLAAGISDFTGVRRRF 331

Query: 347 EFVGTNSRGG----RIYVDYAHTSNSLEMILKNIRTITSGRIIV----------VFGCGG 392
           E  GT  RG     ++Y DYAH    +  +L+  +    G              V  C  
Sbjct: 332 ELKGTVERGPLAGVKVYDDYAHHPTEVAAVLRACKAKAVGEARAAGKPDDERPHVIVCFQ 391

Query: 393 DRDQGKRPIMGK---IALDLADIAIVTDDNPRSEDPEKIR--AEIIHGIPGF-IEKGNRI 446
                +     +    AL LAD AIV D     E+P +    A +   I           
Sbjct: 392 PHLYSRTLKFAEEFGAALSLADHAIVLDIYGAREEPVEGVTGALVAEKIDSTGEYVPGFN 451

Query: 447 EAIRTAIEMLNKQDVLVVAGKG 468
           +A      +    D+++  G G
Sbjct: 452 DAPAAVARVAKPGDIVLTMGAG 473


>gi|301168779|emb|CBW28370.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glut
           amyl-meso-diaminopimelate ligase [Haemophilus influenzae
           10810]
          Length = 453

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 75/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFYHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDEIAPALGRADEVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|262171993|ref|ZP_06039671.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio mimicus
           MB-451]
 gi|261893069|gb|EEY39055.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio mimicus
           MB-451]
          Length = 421

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 111/372 (29%), Gaps = 30/372 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +        P  + 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMESILLQAGYSVGVYSSPHLIRYNERVRINGQDLPDEMH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                        VS+     G    L   +   + ++       GR             
Sbjct: 106 TQAFAHIEHQRGEVSLSLFEFGTLAALYLFQQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKE-----VMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              + L          A+I  + A         +  +              G  ++  ++
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLYQVEI 225

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
              + K   T +   +   F         +     A  L         +    + +    
Sbjct: 226 QFSYEKTSET-TWHWRSGRFELTDLPLPSLPLPNAATALMALGCSGLEISDIDIVEGLRN 284

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPI 401
                 +   SR   I +D AH  +S   +++ ++     + I +V G   D+D      
Sbjct: 285 AQLAGRMQVISREPTIVLDVAHNPHSAHYLVEQLKQRYPHQTIHLVLGMLHDKD------ 338

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  +A++  V           PR+   E++   +  G   +    N + A   A+ 
Sbjct: 339 ---IASTVAELKPVVSHWYPASLSGPRAATAEQLCLYLPAGNTQY---ANPVAAFEAALT 392

Query: 455 MLNKQDVLVVAG 466
             +  DV+VVAG
Sbjct: 393 QTSAHDVIVVAG 404


>gi|255010090|ref|ZP_05282216.1| UDP-N-acetylmuramate--L-alanine ligase [Bacteroides fragilis
           3_1_12]
 gi|313147885|ref|ZP_07810078.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides fragilis 3_1_12]
 gi|313136652|gb|EFR54012.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides fragilis 3_1_12]
          Length = 464

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 100/335 (29%), Gaps = 37/335 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +   S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLLHHSHIGCTAF-LGGISKNYGTNLLLSPSSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T    DH+D + T       +  
Sbjct: 169 ADEFDRSFHWLSPYMSV-------------------ITATDPDHLDIYGT------EQAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++     G ++ +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIREGISLQPKVQEGVKIYTYSRDKGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            I  + +  +    +P    + N + A  L    G+ +  + + +     V  RF+F   
Sbjct: 264 FIGPDIRIDNIQLGVPVSINIENGVAAMALAYLNGVTAEEIKQGMASFRGVDRRFDF-KI 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFG-CGGDRDQGKRPIMGKIALDL 409
            +       DYAH  + ++  + ++R +   + I  VF      R +            L
Sbjct: 323 KNDQIVFLSDYAHHPSEIKQSVMSMRELYRDKKITAVFQPHLYTRTRDFYKDFADSLS-L 381

Query: 410 ADIAIVTDDNPRSEDP------EKIRAEIIHGIPG 438
            D  I+ D  P  E P      + I   +  GI  
Sbjct: 382 LDEVILVDIYPAREQPIPGVTSQLIYDNLRPGIEK 416


>gi|197302584|ref|ZP_03167639.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
 gi|197298482|gb|EDY33027.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
          Length = 457

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 22/280 (7%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   ++  +    +  N+  DH++ H T +AY  AK  + +    +++  + Y
Sbjct: 170 EMSSFQLET--IETFRPRVSAILNITPDHLNRHHTMEAYIAAKENIAKNQTEEDTCVLNY 227

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD--FLFP 305
            D       + R      +   + +  + I  + +     K  ++++ E  +        
Sbjct: 228 ED------AVTRQFGETLKAKVLYFSSQRILEEGIYLDGEKIVLSLNGEKTEICTVNELN 281

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           + G     NA+ AA +  A G+   ++ + L++   V  R EFV                
Sbjct: 282 ILGTHNHENAMAAAAMAAAYGVPVEIIRKTLKEFQGVEHRIEFVAEKDGVVYYNDSKGTN 341

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++    ++        R  V+ G G D+D      +      +  + ++          
Sbjct: 342 PDAAIKGIQA-----MNRPTVLIGGGYDKDSAYDEWINAFDGKVKKLVLI------GATR 390

Query: 426 EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           EKI       G    +      EA    +E     D +++
Sbjct: 391 EKIAQTAEKLGFHEIVMADTFEEAFEKCVEYAEPGDAVLL 430


>gi|88704101|ref|ZP_01101816.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
 gi|88701928|gb|EAQ99032.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
          Length = 463

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 130/428 (30%), Gaps = 50/428 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKH 113
           GH     A++  A+ +V+SSA    +          I VV   R+   L+      YG  
Sbjct: 55  GHR--AAAVSD-ADVVVISSAVGEDNDELVAARERRIPVV---RRAEMLAELMRHRYG-- 106

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +AV GT GK++  S +  +   +G   +F IG     +                 +
Sbjct: 107 ----IAVAGTHGKTTTTSLIAAVFAAAGLDPTFVIGGRVNSTGTHAQLGAGRFLIAEADE 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           + +                          ++ +    TN+  DH++ +    A       
Sbjct: 163 SDASFLH----------------------LQPMVTVVTNIEADHMETYGGDFAELRRTFV 200

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP    A++  DD     +               +    I   +   +  +  V 
Sbjct: 201 EFLHNLPFYGLAVLCVDDPVLAGLDADLGRPILGYGFSEHADYRISDLEPDGLSTRFVVR 260

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        +PG   V NA  A  +    GID A++   L     V  RF      
Sbjct: 261 RPDAHPPLAISLNMPGPHNVLNATAAVAVATDQGIDDAVIQNALANFGGVGRRFSVFDKV 320

Query: 353 SRGGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             G        DY H    +   L + R     R  VV      R    R +       L
Sbjct: 321 RIGAHEVTLVDDYGHHPTEVAATLASARQAWPERR-VVMVYQPHRFTRTRDLYDDFVSVL 379

Query: 410 A--DIAIVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +  D  ++ +  P  E      D   +   I   G    +   + +E     +++L   D
Sbjct: 380 SETDFLVLLEVYPAGEEVITGADSRSLARSIRQRGQLDPLYAASALEVPALLVDVLEPGD 439

Query: 461 VLVVAGKG 468
           ++V  G G
Sbjct: 440 IVVTQGAG 447


>gi|326803163|ref|YP_004320981.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650206|gb|AEA00389.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 452

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 77/220 (35%), Gaps = 12/220 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +     FTN+  DH D++   +  F A  +   +    ++  I Y DD Y +++    
Sbjct: 163 AYEPDYAIFTNIDFDHPDFYHNIEEVFAANRKFAHQ---VKNKVIAYGDDPYLQKLKDEV 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                    +      I  K +          + V+GK + +F     G+  + N+L   
Sbjct: 220 ---DVWYYGIDNDDFDIVAKDIVRNTKGSHFDVWVQGKHYGNFSIHTFGQHSILNSLAVI 276

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G C   G D   V E L     V  RF           I  DYAH  + ++  +   R  
Sbjct: 277 GFCYLEGFDPEDVQEALTSFKGVKRRFNERFVE--DMVIVDDYAHHPSEIKATIDAARQQ 334

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
              + ++         +    ++ + A  L  +D A V D
Sbjct: 335 YPDKAVISVFQPHTYSRTL-ALLDQFAEALDKSDAAFVCD 373


>gi|217974677|ref|YP_002359428.1| UDP-N-acetylmuramate [Shewanella baltica OS223]
 gi|217499812|gb|ACK48005.1| UDP-N-acetylmuramate [Shewanella baltica OS223]
          Length = 463

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 105/359 (29%), Gaps = 36/359 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
             +LAV+GT GK+S +S +  I    G    F IG        +     T    +   + 
Sbjct: 106 RWVLAVSGTHGKTSTSSMLAWILDDCGYEPGFLIGGVPQNFGVSARLGKTAFFVVEADEY 165

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            S    +    V                         NL  DH D      A       L
Sbjct: 166 DSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQKQFNHL 210

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +  +          A  + +         +      +       K  +    +    
Sbjct: 211 VRTVPGEGKIVWPADSHAVKQTI--EMGCWSEQETYHLAESTSGWYGKALSDDCHRFEVF 268

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                     + L G+  + NA++A      +G+  +  +E L K      R E +G   
Sbjct: 269 FDGESQGILEWDLIGQHNIENAMMAIAAARHVGVKPSAAIEALAKFMPPKRRLELLG-TV 327

Query: 354 RGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGD-------RDQGKRPIMGKI 405
            G  +Y D+AH   ++   LK +R  +   +I VV     +       +D     +M   
Sbjct: 328 NGVSVYDDFAHHPTAIATTLKGMRAKVGQSKITVVLEPRSNTMKSGVHKDTLAFSMM--- 384

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD A +   +    + ++     +  +    +  +    +          D +VV
Sbjct: 385 ---QADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVTATAKAGDTIVV 437


>gi|187732828|ref|YP_001878898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii CDC 3083-94]
 gi|187429820|gb|ACD09094.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           CDC 3083-94]
          Length = 438

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 136/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +    S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIARAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|315174254|gb|EFU18271.1| UDP-N-acetylmuramate--alanine ligase [Enterococcus faecalis TX1346]
          Length = 456

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 87/304 (28%), Gaps = 38/304 (12%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AVTG+ GK+S    +  +      +S+ IG                P   + A    
Sbjct: 118 TSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIG---------DGTGHGEPDADFFAFEAC 168

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 + +                         TN+  DH DY+++ +  F+A  +   
Sbjct: 169 EYRRHFLAYSP------------------DYAIMTNIDFDHPDYYKSIEDVFSA-FQTMA 209

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             + K   A         K + +           V  +                      
Sbjct: 210 HQVKKGIFAYGD-----DKYLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVYHK 264

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F+ P  G   + NAL    +     +D   V E +     V  RF     +   
Sbjct: 265 DDFVGHFVLPAFGHHNIMNALGVIAVAYFEKLDMQKVAEEMLSFKGVKRRFSEKKVS--D 322

Query: 356 GRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIA 413
             I  DYAH    ++  +   R       II VF      R         + ALDLAD  
Sbjct: 323 MIIVDDYAHHPAEIKATIDGARQKYPDKEIIAVFQPHTFTRTIALMDEFAE-ALDLADEV 381

Query: 414 IVTD 417
            + +
Sbjct: 382 FLCN 385


>gi|295098380|emb|CBK87470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 445

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 99/363 (27%), Gaps = 44/363 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AV GT GK++ A     I +  G      G          D         +    
Sbjct: 90  DRWVVAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 146

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 147 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 191 QFHHLVRIVPGQGRIILPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLNADASEWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWGLVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RI+ V        +     MG    DL  
Sbjct: 310 HGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP-----RSNTMKMGICKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI----RTAIEMLNKQDV 461
               AD   +         P+ I  ++       I+  +    +       ++     D 
Sbjct: 365 SLGRADEVFLLQ-------PQHIPWQVAEVADACIQPAHWSADVDVLADMVVKAAQPGDH 417

Query: 462 LVV 464
           ++V
Sbjct: 418 ILV 420


>gi|330718781|ref|ZP_08313381.1| folylpolyglutamate synthase [Leuconostoc fallax KCTC 3537]
          Length = 438

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 60/428 (14%), Positives = 133/428 (31%), Gaps = 42/428 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRK-FLSLFASRL-YGKHPENILAVTGTSGKSSVA 130
             +    +  +   + +    V+++ R  FL    S + + +   +++ + GT+GK S  
Sbjct: 7   AEAKLVAKYKATIKKMDKTWRVLEDNRVPFLKEVLSWIDHPEQQMDVIQIAGTNGKGSTG 66

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP--------------SPIYLAKALSY 176
           + +  +   S L               Q      P                +      + 
Sbjct: 67  AILSAVINASQLKVGHFSSPYVNDDREQITLNGEPITRRDFLIYFKQVTDALLKHGKSTN 126

Query: 177 LSSQGVTHVS-----VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
             S     +       EASS  +    ++         TN   +      T+ +  +  +
Sbjct: 127 DLSYFEYFMMIALLYFEASSVNIAI--IEAGLGGLRDATNAIDNAKLTVFTKISMDHENL 184

Query: 232 RLFEELLPKESPAIIYADDAYSKEV----MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                    ++ A +              ++  +    R  +VG +     +  +   + 
Sbjct: 185 MGHNVKEIAQNEAALIKPGTCVVSYAGQDIQALNVLKARTAAVGAEWFSGKIGHIIVENT 244

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                      D  +   LPG FQ +N      +  A+ +      +    + +   R  
Sbjct: 245 SPNGLKLKIDDDSGYQLNLPGMFQAHNLNTVLQVLAALRLYGYQTSKEDLNIGLHNARMI 304

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIA 406
                     I  D AH  + ++ ++  I +     +  +V G   D+D      M    
Sbjct: 305 GRMDYDGENNILYDAAHNVDGIQALVSTINSWHLKFKPTLVIGVLKDKDYH---EMLDEI 361

Query: 407 LDLADIAI-VTDDNP-RSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEML-----NK 458
           +      I +T  NP R+   +++ A+I+   P   +E  +   A   A+ +      + 
Sbjct: 362 VPFVQRVITLTPSNPTRALSGDELAADILTNYPNIDVEIADDPTA---ALSLAMRTRESS 418

Query: 459 QDVLVVAG 466
           Q ++VV G
Sbjct: 419 QAMIVVTG 426


>gi|329961140|ref|ZP_08299395.1| protein FolC [Bacteroides fluxus YIT 12057]
 gi|328532078|gb|EGF58888.1| protein FolC [Bacteroides fluxus YIT 12057]
          Length = 402

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 96/372 (25%), Gaps = 12/372 (3%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+L A   +       + V GT+GK S +  +  I Q +G           +    +   
Sbjct: 18  LALDAHFGHPHRSFRSIHVAGTNGKGSCSHTLAAILQEAGYRVGLYTSPHLVDFRERIRV 77

Query: 162 LT--TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                P    +             H S    +  +         +            +D 
Sbjct: 78  NGVSIPEEYVIRFVEKERGFFEPLHPSFFELTTAMAFRYFADETVDVAVIEVGLGGRLDC 137

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
                        +  +        +       +  + KR                    
Sbjct: 138 TNIILPDVCLITNISFDHTQFLGDTLAKIAGEKAGIIKKRIPVVIGETTPETRPVFLQKA 197

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI---AIGIDSALVLEHL 336
            +  A     +     +    +       + +    ++ A   +      +D + V    
Sbjct: 198 HEAGAPIYFAEENDREDYPGLECELKGLYQAKNTRTVLTALPLLKEAGFHLDESSVRSGF 257

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD- 395
             +  + G             +  D  H    +  I++ +R      + +V G   D+D 
Sbjct: 258 AHVTELTGLMGRWQKLQDAPTLICDTGHNVGGISYIVEQLRQQPYQHLHIVMGMVNDKDI 317

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIE 454
           +G   ++ K A      A V    P +E       E+  G         +   A+R A +
Sbjct: 318 RGVLALLPKEATYYFTKASVKRALPETE-----LKELASGAGLQGSCYPDVPAAVRAAQQ 372

Query: 455 MLNKQDVLVVAG 466
               +D + V G
Sbjct: 373 KSLPEDFIFVGG 384


>gi|303257108|ref|ZP_07343122.1| tetrahydrofolate synthase/dihydrofolate synthase [Burkholderiales
           bacterium 1_1_47]
 gi|302860599|gb|EFL83676.1| tetrahydrofolate synthase/dihydrofolate synthase [Burkholderiales
           bacterium 1_1_47]
          Length = 428

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 60/388 (15%), Positives = 116/388 (29%), Gaps = 23/388 (5%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              +     RL  +    +  V GT+GK S  +F++      G S         I    +
Sbjct: 25  LDRMETMLKRLDIRFKCPVFTVGGTNGKGSTCAFIESALLAGGYSVGVHTSPHLIRFNER 84

Query: 159 ----------DNRLTTPSPIYLAKALSYLSSQGVT--HVSVEASSHGLDQHRLDGIKLIA 206
                     +  +     +  A+    LS    T   + +  +   LD   L+      
Sbjct: 85  VRINGKDAKDEELIRQFEKVEAARGEMTLSYFEYTLLGILLLFAEKDLDAVVLEIGLGGR 144

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N     +    +      A +    E +  E   I  +                  
Sbjct: 145 LDAVNTVEPSVSVITSIGIDHTAYLGTTRESIGWEKAHIYRSGKPAICADANPPITVEQY 204

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              +G +   I        ++  +       +      PLP     +    A+G   A+ 
Sbjct: 205 ADKIGAELLVIGKNFRFEHNHSDKTWNFYGSRGELRNLPLPTMSGEHQLNNASGAFEALQ 264

Query: 327 IDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-G 382
                +    E                       +Y+D  H  ++ + + K +  +    
Sbjct: 265 CMQGKLPLKREAFESALLNTRITGRFSKVRNAPEVYLDVGHNPHAAKELAKTLSELPKAT 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIP--G 438
           R + VFG   D+D   RP + +I +   +   ++D   PR    + + A +   G+P   
Sbjct: 325 RQVAVFGMLSDKD---RPQVCRIMVSSFNKWYLSDLQGPRGGIAQDLCAMLSEAGVPQEK 381

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   EA++ AIE  ++ D +V  G
Sbjct: 382 IQTFKTVEEALQRAIEEAHETDRIVTFG 409


>gi|224476830|ref|YP_002634436.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254766022|sp|B9DN57|MURC_STACT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222421437|emb|CAL28251.1| UDP-N-Aacerylmuramate-alanine ligase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 437

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 119/390 (30%), Gaps = 50/390 (12%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           F P  I +G    ++            +R++   L V +   FL     +         +
Sbjct: 53  FNPDNIEKGMT--IIQGNAFSDTHEEIVRAHELDLEVIDYPTFLGHVIEQYIS------I 104

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           AVTG  GK+S    +  +      +SF IG              +        +   +  
Sbjct: 105 AVTGAHGKTSTTGLLSHVMNGDKRTSFLIG-----DGTGLGIPQSEFFAFEACEYRRHFL 159

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
           S    +  +                      TN+  DH DY +      NA     E   
Sbjct: 160 SYHPDYAIM----------------------TNIDFDHPDYFKDVDDVTNAFQ---EMAY 194

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
             +   + +  D + +++                + + I+   +    +  Q  + ++GK
Sbjct: 195 NVKKGIVAWGKDEHLRKIKADVP----IYYYGLEKNEDIYADNIQITEHGTQFDVYIDGK 250

Query: 299 DFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            FD    P  G+  + N L    +C   G+D   + E LE    V  RF           
Sbjct: 251 YFDQFLSPQYGDHNILNTLAVIMVCHLEGLDIENIKEALETFGGVKRRFNETKL--HNQV 308

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIV 415
           +  DYAH    +   ++  R     + ++         R +       +     AD   +
Sbjct: 309 LVDDYAHHPREINATIETARKKYPNKEVIAVFQPHTFSRTKAFLEEFAESLSK-ADRVFL 367

Query: 416 TD--DNPRSEDPEKIRAEIIHGIPGFIEKG 443
            D   + R  D      ++I  IPG    G
Sbjct: 368 CDIFGSIREHDGSLTIQDLIDRIPGAQLIG 397


>gi|152973099|ref|YP_001338245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957948|gb|ABR79978.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 445

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 97/359 (27%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          D         +    
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 146

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 147 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 190

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       Q   +
Sbjct: 191 QFHHLVRIVPGKGKIILPENDINLKQVMAMGCWSEQELVGEQGHWQAKKLNADASQWEVL 250

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 251 LDGEKVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EA 309

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L+ +R    G  RI+ V        +     MG    DL  
Sbjct: 310 NGVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEP-----RSNTMKMGVCKDDLAP 364

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +       +        ++  +  D ++V
Sbjct: 365 SLGRADEVFLLQPQH---IPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV 420


>gi|149921020|ref|ZP_01909480.1| UDP-N-acetylmuramate--alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149818152|gb|EDM77608.1| UDP-N-acetylmuramate--alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 471

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 129/422 (30%), Gaps = 55/422 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTS 124
           A+ +V+SSA    +    A  +   P++     R   L        G      L V G+ 
Sbjct: 66  ADVVVISSAIKPDNAEVVAARQRKIPVI----PRAEMLGELMRLQQG------LLVAGSH 115

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  S V  +   +GL    +     ++SF  + RL            S  S      
Sbjct: 116 GKTTTTSMVAAVLHGAGLDPTVV-IGGKVNSFDSNARLGAGEIFVAEADESDGSFLV--- 171

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                            +       TN+  +H+D++ + +A  +A    F   +P    A
Sbjct: 172 -----------------LPPTHAIITNIDAEHLDHYGSLEALLDA-FVGFANRVPFYGMA 213

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
            I  DD   + V+ R          V     +   +             +       F  
Sbjct: 214 AICVDDPNVRAVLPRLTKRTVSYGIVSEDADYRASEIELVGGRSHFRVTAHGEDRGRFEL 273

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            +PG   V NAL    LC   G+ + +  + L +   V  RF   G       +   Y H
Sbjct: 274 AMPGRHNVLNALATIALCDEQGVSTEVTRKALREFQGVQRRFTVRGDVDGVVVVDD-YGH 332

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
               L   L   R     R  +V      R    R      A  L  AD+ ++T      
Sbjct: 333 HPTELRATLAAARDAAPTRR-LVATFQPHRYTRLRNHYEDFAASLDAADLVVLTPVYAAG 391

Query: 423 EDPEK---------IRAEIIHGIPGFIEKG---NRIEAI----RTAIEMLNKQDVLVVAG 466
           E P +         +        P  +       R E +    R   E+    D+++  G
Sbjct: 392 EQPIEGYSAEGLGSLLRARKPERPVVLVGPQSLGRAEVVEVTTRRLHELCASGDIVLTLG 451

Query: 467 KG 468
            G
Sbjct: 452 AG 453


>gi|262377640|ref|ZP_06070860.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter lwoffii SH145]
 gi|262307399|gb|EEY88542.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter lwoffii SH145]
          Length = 454

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           ++   EV+++         S+    K     +  +        +       +  + + G+
Sbjct: 223 ESNIDEVLEQGCWTPVVRTSLDANEKAKLYAEQLSADGSHFKVLQQGVVKGEVQWNMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G   RG  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAEHVGVSIETACEALSNFGGVKRRMELLG-TVRGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L+  R  +   ++  +      R    R  MG        +  LAD  I        
Sbjct: 342 DTTLEGARKRLGERKLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVIWYQPEGLD 396

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D + +     +         +    I+T +    + D +V+
Sbjct: 397 WDLQPVIEAAPNKAKVARTLDDI---IQTVVAEAGEGDAVVI 435


>gi|54294640|ref|YP_127055.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
 gi|53754472|emb|CAH15956.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 129/364 (35%), Gaps = 27/364 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNR 161
              A  +  K+   ++AV GT GK++  S +  I  ++G+   F IG  S+  + +    
Sbjct: 95  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLG 152

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 I   +  S    +                      +       NL  DH D + 
Sbjct: 153 KGRWFVIEADEYDSAFFDKRPKF---------------MHYRPNIAVLNNLEFDHADIYP 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              A    +       +PK   AI   DD    EV+ R      R+ ++   G+   + +
Sbjct: 198 DLAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQF--SRIETLALSGEAEWVAE 254

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      Q   +   G   +  +PL G+F V N L A       G++  +  + LE+   
Sbjct: 255 LIDDSGSQFNILHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPMVAAKALEQFSP 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E   +N  G  +Y D+AH   ++   +  ++   SGR   +F          R  
Sbjct: 315 VKRRLEV-RSNRHGITVYDDFAHHPTAITKTIDALKR--SGRHQRIFAVMEFASYTMRT- 370

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQD 460
            G  A ++A      D     E  +    + +      +    N  E ++  I+ + + D
Sbjct: 371 -GVHAAEMAHALAPVDGAYVLEPQDFNLKDFVSSWTCPYKICKNNEEIVKEIIKAVREGD 429

Query: 461 VLVV 464
            ++V
Sbjct: 430 AVLV 433


>gi|238786723|ref|ZP_04630524.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238725091|gb|EEQ16730.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 491

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 131/423 (30%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 227 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQDGPQGHFTLK-RLDKPLMTVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRG 355
              PG     NA  A  +    GI    +L  L        RF+F+G             
Sbjct: 286 LNAPGRHNALNAAAAVAVATEEGIADDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGS 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 346 VMLVDDYGHHPTEVDATVKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         ++LN  D+++V G
Sbjct: 405 LMLDVYAAGEPPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGNDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|157156086|ref|YP_001461258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli E24377A]
 gi|209917281|ref|YP_002291365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SE11]
 gi|218552671|ref|YP_002385584.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI1]
 gi|300816126|ref|ZP_07096349.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300923130|ref|ZP_07139190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|301330131|ref|ZP_07222800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|157078116|gb|ABV17824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E24377A]
 gi|209910540|dbj|BAG75614.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE11]
 gi|218359439|emb|CAQ96977.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI1]
 gi|300420585|gb|EFK03896.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|300531333|gb|EFK52395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300843878|gb|EFK71638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|320200393|gb|EFW74979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EC4100B]
 gi|324017751|gb|EGB86970.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 117-3]
          Length = 438

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFAGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|319896772|ref|YP_004134966.1| udp-n-acetylmuramate:l-alanyl-gamma-d-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3031]
 gi|317432275|emb|CBY80627.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3031]
          Length = 453

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 76/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +         V      K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFVVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDDIAPALGRADEVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|241765420|ref|ZP_04763390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           delafieldii 2AN]
 gi|241364825|gb|EER59798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           delafieldii 2AN]
          Length = 176

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 9/146 (6%)

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L    G   A +L  L +    P R E +G  +              +       +  
Sbjct: 1   MALACEAGCPLAPMLYGLREYRGEPHRVEPIGVVAGVEYFDDSKGTNVGATVA---ALTG 57

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           + + R +VV   G  + Q   P+ G +A   A + ++        D   IRA +      
Sbjct: 58  LGADRRLVVILGGEGKGQDFSPLAGPVA-RYARVVVL-----MGRDAPLIRAALQDAGVP 111

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++     +A++ A +  +  D +++
Sbjct: 112 LVDAQTLPQAVQLAAQRAHAGDAVLL 137


>gi|149190166|ref|ZP_01868442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
 gi|148836055|gb|EDL53016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
          Length = 442

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 68/401 (16%), Positives = 125/401 (31%), Gaps = 59/401 (14%)

Query: 15  INQLSIFPMQWRERKINEVSSDSRHIQAGWIFVA--IV-GNKEDGHLFIPQAIAQGAEAI 71
           ++ ++       +  +     DSR    G    A  +  G +     F  + + Q A+ I
Sbjct: 20  LSVVNHVSKNHPDVTVR--VMDSRENPPG----AEQLPEGAELHAGSFNTEWLNQ-ADLI 72

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V +   +L            I VV +         +    K    ++A+TG++GKS+V  
Sbjct: 73  VCNPGIALATPEIQQALEKGIRVVGDI-----ELFAWATTKP---VIAITGSNGKSTVTD 124

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               + + +G++    G                   + L +  + L         +E SS
Sbjct: 125 LTGAMAKAAGINVGVGGNIGVP-------------ALDLLELNADL-------YVLELSS 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+      +K    +F NL  DH+D +   + Y  AK R+F                 
Sbjct: 165 FQLET--TYSLKTKVSTFLNLSEDHMDRYHGMEDYAQAKRRIFFNAEHALVNRDEPETSP 222

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               +         +   +      + L              + E         L G+  
Sbjct: 223 ELAGLPVATFGFNEQDFGMREIDGQVWLVD------------NGETIISTDQLRLVGKHN 270

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             NALVA  L    GI+    L  L     +  R + V        +    A    S   
Sbjct: 271 WSNALVACALLKLSGINYRKGLACLAAYTGLSHRCQVVADEKGVKWVNDSKATNVASTLA 330

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
            L  +     G++ ++ G  G     K     ++A  L+++
Sbjct: 331 ALSGLTL--EGKLYLLVGGVG-----KGADFSELAKPLSEL 364


>gi|91786971|ref|YP_547923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
 gi|118595672|sp|Q12EL7|MURD_POLSJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91696196|gb|ABE43025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
          Length = 587

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 119/371 (32%), Gaps = 54/371 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+TGT+GK++V S V Q+ QR+G +    G             L       L       
Sbjct: 210 LAITGTNGKTTVTSLVGQLVQRAGKTVAVAGNIGPTLLDTLSAHL---DADTL------- 259

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS  L        +  A    N+ +DH+D+H    AY  AK R+F   
Sbjct: 260 ----PQVWVLELSSFQLAD--AQDFEPTAAVVLNVTQDHLDWHGDMDAYVAAKARIFGRS 313

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI-------------------- 277
                  ++  DD    E++        R   V     F                     
Sbjct: 314 T----FMLLNRDDPRVMEMLPTPVKVRLRPPQVRPHSTFGAGEPQRPGDYGIETVNGMAW 369

Query: 278 -----HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
                   +       ++V + ++         + G     NAL A GL +A G   A +
Sbjct: 370 LVRAAQADETIKRRKGEEVELHIQRLMPLDALRIRGRHNATNALAALGLAVAAGCSLAPM 429

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           L  L +    P R E +   +               +      +  + + R +VV   G 
Sbjct: 430 LHGLREYRGEPHRVESIAVVNDVEYFDDSKGTN---VGATAAALAGLGAERKLVVILGGE 486

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
            + Q   P+  +     A   ++       +D   IR+ +       ++  +  EA+  A
Sbjct: 487 GKGQDFSPL-AEPVSHHARAVVLI-----GKDAPLIRSALQASQVALLDAASMQEAVSLA 540

Query: 453 IEMLNKQDVLV 463
               +  D ++
Sbjct: 541 AAQAHTGDAVL 551


>gi|89100115|ref|ZP_01172984.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911]
 gi|89085205|gb|EAR64337.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus sp. NRRL B-14911]
          Length = 431

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 106/351 (30%), Gaps = 49/351 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +AY    ++    ++   PI+      +FL  F  +         +AVTG  GK+S
Sbjct: 64  VIAGNAYPDTHEEIQEAMKLGLPIVR---YHRFLGDFMKKFTS------VAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  + + +  +SF IG  +       +            +   +  S    +  + 
Sbjct: 115 TTGLLAHVMKGAKPTSFLIGDGTGRGDADAEY-----FVFEACEYRRHFLSYFPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY       F+A  +     + K   A    
Sbjct: 169 ---------------------TNIDFDHPDYFANIDDVFSA-FQEMSWQVNKGIFACGD- 205

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                +++ K            G +  F     + +                 F  P  G
Sbjct: 206 ----DEQLQKIQAKVPVLFYGFGEENDFQARNVIKSTEGTTFDVFVRNTFYDTFSIPQFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V N+L    LC    IDS +V + L     V  RF      S+   I  DYAH    
Sbjct: 262 DHNVLNSLAVIALCHYEEIDSEIVKDLLLTFEGVKRRFSEKKVASQ--VIIDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD 417
           +   ++  R     + IV         R Q       +     AD   + D
Sbjct: 320 IRATVEAARQKYPEKEIVAVFQPHTFTRTQTFLDDFAESLNK-ADKVYLCD 369


>gi|331001074|ref|ZP_08324705.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569379|gb|EGG51157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 477

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 87/291 (29%), Gaps = 14/291 (4%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  L+    + +   + +  N+  DHID+H + + Y  AK ++F
Sbjct: 165 HRQVGTLPDFWVLELSSFQLET--TESLHCDSAALLNITEDHIDWHGSMEKYAAAKRKIF 222

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                +            ++ V     +              I         +    + S
Sbjct: 223 SADTVRVLNREDPGSMLSAEGVPSDLVHTFGSDAPKKIGDFGISDVGALVWLSGCIASAS 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            E         + G     NA+ A  L +A+GI    +L  L +    P R + +     
Sbjct: 283 PELLIPMNALRIRGLHNAMNAMAATALTLAVGIPLDSILRMLREYKGEPHRVQLILRA-- 340

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIA 413
                +DY   S    +          G   VV   GGD + Q   P+   I        
Sbjct: 341 ---SDIDYVDDSKGTNVGAVAAALAGFGPKKVVLILGGDGKGQDFAPLKAPIETHAKGAV 397

Query: 414 IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  D P  E        +              EA+R A  M    D +++
Sbjct: 398 FIGRDAPLIEKEVDYPGLLKAHAK------TMAEAVREARAMAKPGDTILL 442


>gi|304398236|ref|ZP_07380110.1| FolC bifunctional protein [Pantoea sp. aB]
 gi|304354102|gb|EFM18475.1| FolC bifunctional protein [Pantoea sp. aB]
          Length = 422

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 55/183 (30%), Gaps = 9/183 (4%)

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            + Q    S   +D           QV     A  L         +    +     +   
Sbjct: 227 WSWQAQAESWSLRDALGELNDLPLPQVPLPNAATALVALRVSGLEVSEAQIRASLPLAML 286

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMGK 404
                T S   R+ +D AH  ++   +   + T+   G++  V G   D+D         
Sbjct: 287 PGRFQTISESPRVILDVAHNPHAASYLASQLATLPKRGKVHAVVGMLHDKDIAGT---LT 343

Query: 405 IALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               + D       D PR    E++   +  G        +   A + A +    QD ++
Sbjct: 344 ALAPMVDAWYCAPLDGPRGASAEQLLDCLSQG----EAFSSVELAWQQARQRAAPQDTVL 399

Query: 464 VAG 466
           V G
Sbjct: 400 VCG 402


>gi|213965210|ref|ZP_03393407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Corynebacterium
           amycolatum SK46]
 gi|213952062|gb|EEB63447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Corynebacterium
           amycolatum SK46]
          Length = 492

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 132/442 (29%), Gaps = 59/442 (13%)

Query: 66  QGAEA----------IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           +GA A          +VV    S          +   +   + R  L+   + +      
Sbjct: 37  RGAIAMLKDIGCPEVVVVDD--SALGALVAADFSVRHVTTADARDELADVVAIVTSPGWR 94

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP-------- 167
               + G + ++ V  F       +G  +   GP  T       N  TT +         
Sbjct: 95  PTSPLFGAAAEAGVPVFGDVALAFAGDCAQLWGPKRTWLVVTGTNGKTTTTSMLAAMLGE 154

Query: 168 -------IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
                  I +A   +  +   +  ++ E SS  L       I+  AG   NL  DHID+H
Sbjct: 155 QGAAVGNIGVALYDALTAEPRIEVLAAELSSFQLHW--APNIRPDAGVLLNLAEDHIDWH 212

Query: 221 QTQQAYFN--------AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
            + + Y          A      +             +      +    +       VG 
Sbjct: 213 GSYENYGMDKTRALRGAVAIYGADDADVVEHVEKMRKNDELGNSVVGFTDGPPEAHQVGV 272

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +   I  +           +              PG   V +A+ A  +  +IG     +
Sbjct: 273 RDGMIVDRAFGGGDAAADDSEPGIVIASIAGISPPGRAGVLDAVAATAMARSIGTSPEQI 332

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
              LE   V   R + V   +    I    A   ++ +        ++    +V    G 
Sbjct: 333 AAALEIFEVRAHRGQIVHKANDVVWIDDSKATNPHAADAA------LSGHERVVWIVGGQ 386

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-----NRIE 447
            +     P++ K A  L    ++  D        ++ ++ +  I   +        ++++
Sbjct: 387 LKGAEISPLVAKHAHRLQAAVVLGVD-------RQLVSDALSRIAPAVPVVVIDDTDKVD 439

Query: 448 AIRT----AIEMLNKQDVLVVA 465
           A+      A E  N  DV+++A
Sbjct: 440 AMAKVCMAASEYANPGDVVLLA 461


>gi|329922717|ref|ZP_08278269.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
 gi|328942059|gb|EGG38342.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
          Length = 356

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 112/361 (31%), Gaps = 53/361 (14%)

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GK++  ++V ++ + +GLS    G               TP         +  ++     
Sbjct: 1   GKTTTTTWVGEMLESAGLSPIVAGNIG------------TPLS------EAAATATENDW 42

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           + VE SS  L     +  +       N+   H+DYH     Y  A           E  A
Sbjct: 43  MVVELSSFQLK--GTEAFRPRIACLLNVTETHLDYHGGMDDYV-ASKAKLFANQTSEDTA 99

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           ++  DD   + ++                 + +H+    A   +         +      
Sbjct: 100 VLNWDDPVCRNLVPYIKAHIVPFSMSESLREGVHITPPYAPGAQDSDEDDQGRRIIYTDG 159

Query: 305 PLPGE-------------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                             F V NA+ A  + IA G+    + E L     V  R EFV  
Sbjct: 160 EGFTHEIIRVENIGLPGRFNVGNAMAACAIAIAAGVAPDKLEEALSSFRGVEHRLEFVAE 219

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                      A  S +  M L + +       +V+   G DR      ++  +   +  
Sbjct: 220 LQGVSYYNNSKATNSKATHMALTSFKE-----PVVLIAGGLDRGSDYEELIPSMQGRVKA 274

Query: 412 IAIVTDDNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEA-------IRTAIEMLNKQDVLV 463
           + ++       E  EKI  A    G+   I   N  +A       +R A  +    D+++
Sbjct: 275 VVLL------GETREKIANAAAKAGLKDIILVDNGEDAASTLTSAVRKAAGLAESGDIVL 328

Query: 464 V 464
           +
Sbjct: 329 L 329


>gi|300788099|ref|YP_003768390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
 gi|299797613|gb|ADJ47988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
          Length = 469

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 130/409 (31%), Gaps = 53/409 (12%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             +V S  +          +   + V+ +      +       +HP + L VTGT+GK++
Sbjct: 64  VLVVTSPGWRPTSPLLVAAAEAGVEVIGDVELAWRV---GRLREHPPSWLVVTGTNGKTT 120

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               ++ I   +G ++   G     +                          G   ++VE
Sbjct: 121 TVGMLESILNAAGSNAVACGNIGYAAL--------------------DAVRAGYDVLAVE 160

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L       +   A +  NL  DHID+H +   Y  AK R++         A+  A
Sbjct: 161 LSSFQLHWSST--LAPDAAAVLNLAEDHIDWHGSMDEYAAAKGRVYTR----AKVAVHNA 214

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-----L 303
           DD +S  +       G   +             V       +  ++      +       
Sbjct: 215 DDDWSTRIAAEHAPEGTPRVGFQLDTPRAGELGVVEDLLVDRAFVADPENSAEALATLAD 274

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
               G   V NAL AA L  A G+    V + L +    P R   V   +    +    A
Sbjct: 275 VRPAGPHNVANALAAAALARAHGVSPDAVAKGLREYQPAPHRAVEVAEVAGVRYVNDSKA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              ++         ++ +   IV    G  +      ++  IA  L  + ++  D+P   
Sbjct: 335 TNPHA------AAGSLRAHASIVWIAGGQLKGASVDELVSSIAGRLRGVVLLGVDSP--- 385

Query: 424 DPEKIRAEIIHGIPGFIEKGNR-------IEAIRTAIEMLNKQDVLVVA 465
               I A +    P       R         A+  A  M    DV+++A
Sbjct: 386 ---VIAAAVARHAPDVPVNSLRPGDDEPMTAAVSAASAMARPGDVVLLA 431


>gi|153009072|ref|YP_001370287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560960|gb|ABS14458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 467

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 101/309 (32%), Gaps = 39/309 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                +A+TGT+GKS+  + +  I + SG      G   T         + T  P     
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKASGRDMQLGGNIGTA--------ILTLEPP---- 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  Q      VE SS+ +D      +   AG   NL  DH+D H + + Y      
Sbjct: 160 -------QANRFYVVECSSYQIDL--APSLNPTAGILLNLTPDHLDRHGSMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + E L+     AI+  DD Y + +  R +  G  V+ +  +                   
Sbjct: 207 IKERLVAASDTAIVGVDDDYCEAIADRLYRDGVHVVRISKERHLGKGYFADGAKLLWSQD 266

Query: 293 ISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
             ++     + +  L G     NAL A   C+++G+    +   L+    +  R E VG 
Sbjct: 267 GEIDEIASLEGIGSLRGAHNAQNALAAVVACLSVGLSLEEIDAGLKSFPGLAHRMEQVGH 326

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD----------QGKRPI 401
             +   +    A      E     + +       +  G                  K  +
Sbjct: 327 RGKVLFVNDSKATN---AEATAPALSSFLQNIYWIAGGVPKAGGIASLAGFFPRIAKAYL 383

Query: 402 MGKIALDLA 410
           +G+ A   A
Sbjct: 384 IGEAAAQFA 392


>gi|326332999|ref|ZP_08199255.1| tetrahydrofolate synthase [Nocardioidaceae bacterium Broad-1]
 gi|325949193|gb|EGD41277.1| tetrahydrofolate synthase [Nocardioidaceae bacterium Broad-1]
          Length = 440

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 16/167 (9%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
            Q +NA++A     A+  D+  +      L     PGR E +        + +D AH  +
Sbjct: 266 HQAHNAVLAIASVEALLGDAIPLDPLRRALGSTRSPGRLEVLPG---NPAVILDAAHNPD 322

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPE 426
               +   +  +     + V    GD+D      M      +    I T + +PRS    
Sbjct: 323 GARALAAGLSDLGRRPTVAVVAAMGDKDL---AGMLAELEPVVTTMICTRNSSPRSLSAG 379

Query: 427 KIRAEIIH--GIPGFIEKGN----RIEAIRTAIEMLNKQDV-LVVAG 466
              AE     G    +E G+     +EA+RTA  +  +    ++V G
Sbjct: 380 DTAAEARGVLGPDRVVEIGHLGHALLEAVRTASALSGEGGAQVLVTG 426


>gi|301597036|ref|ZP_07242044.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB059]
          Length = 347

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 83/266 (31%), Gaps = 7/266 (2%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     NL  DH D      A    +       +P E   I    + +  EV++  
Sbjct: 65  HYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPITETHIDEVLEMG 123

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   S+    K     ++ +I       +       +  + + G+  V NAL    
Sbjct: 124 CWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVANALATIA 183

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-I 379
               +G+      E L     V  R E +G  + G  +Y D+AH   +++  L   R  +
Sbjct: 184 AAQHVGVSLEKACEALSNFGGVKRRMELLGMIN-GIEVYDDFAHHPTAIDTTLDGARKRL 242

Query: 380 TSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              R+  +     +  + G        +  LAD  I     P   D   ++  I      
Sbjct: 243 GERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVI--WYQPEGLDW-DLQPVIEAATNH 299

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                +  E I   +    + D +V+
Sbjct: 300 AQVSRSLDEIIERIVNEAGEGDAVVI 325


>gi|223984266|ref|ZP_03634411.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
 gi|223963751|gb|EEF68118.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
          Length = 438

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 95/262 (36%), Gaps = 26/262 (9%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                   NL  DH+DY  +  AY++AKM +++     +   +   D      ++KR   
Sbjct: 170 HPAVSVCMNLTPDHLDYFGSLDAYYDAKMLVWKNQTGDDWFLVNLDDPE----IVKRCAE 225

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
             CR ++           K   +    Q   ++          LPG   + NA+VAA + 
Sbjct: 226 LPCRRVTFSLDQPADVCVKQDQVWLFDQPLFALSD------LHLPGRHNLQNAMVAAAMA 279

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + +G+D+  + E +     V  R EFV                 ++  + LK        
Sbjct: 280 VKLGVDADQIREGIRAFKGVEHRIEFVAEIRGARYYNDSKGTNVDATTVALKAFE----- 334

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           + +++   G D+  G    +  +   +A + +            + R ++    P  I  
Sbjct: 335 KPVILLAGGYDKKTGF-DGLKPVLDRVATMIVY----------GETRGQLKALRPDAIVV 383

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
               EA+  A ++    D++++
Sbjct: 384 ETLSEAVEQAYQLAKAGDIVLL 405


>gi|52786669|ref|YP_092498.1| hypothetical protein BLi02937 [Bacillus licheniformis ATCC 14580]
 gi|52349171|gb|AAU41805.1| FolC [Bacillus licheniformis ATCC 14580]
          Length = 434

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRFE V        +Y+D AH    +E + + I +  +GR I V      +D+  R +
Sbjct: 301 WPGRFEKV---LNKPLVYIDGAHNKEGMERLAETISSHFAGRNIHVC-FSALKDKPYRDM 356

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIE 441
           + KI    A     T  D PR+E  +K+  +       F E
Sbjct: 357 IRKI-ESFASSIHFTSFDFPRAESAQKLFEQSTADYKTFDE 396


>gi|52081290|ref|YP_080081.1| folyl-polyglutamate synthetase [Bacillus licheniformis ATCC 14580]
 gi|319647203|ref|ZP_08001425.1| FolC protein [Bacillus sp. BT1B_CT2]
 gi|52004501|gb|AAU24443.1| folyl-polyglutamate synthetase [Bacillus licheniformis ATCC 14580]
 gi|317390550|gb|EFV71355.1| FolC protein [Bacillus sp. BT1B_CT2]
          Length = 432

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRFE V        +Y+D AH    +E + + I +  +GR I V      +D+  R +
Sbjct: 299 WPGRFEKV---LNKPLVYIDGAHNKEGMERLAETISSHFAGRNIHVC-FSALKDKPYRDM 354

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIE 441
           + KI    A     T  D PR+E  +K+  +       F E
Sbjct: 355 IRKI-ESFASSIHFTSFDFPRAESAQKLFEQSTADYKTFDE 394


>gi|86150166|ref|ZP_01068393.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597540|ref|ZP_01100774.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562465|ref|YP_002344244.1| hypothetical protein Cj0837c [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839282|gb|EAQ56544.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190132|gb|EAQ94107.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360171|emb|CAL34965.1| conserved hypothetical protein Cj0837c [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926082|gb|ADC28434.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928496|gb|EFV07802.1| hypothetical protein CSS_2272 [Campylobacter jejuni subsp. jejuni
           305]
          Length = 313

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++ G+ F        D    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKTGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ +GA AI+  +  +++D             V+N  + L  F            L  
Sbjct: 48  AQAVKKGAYAIITENDITIEDKE------IFYFRVENLERALVRFLRFFCEDKECEFLLF 101


>gi|325838528|ref|ZP_08166550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490823|gb|EGC93125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 459

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 100/354 (28%), Gaps = 24/354 (6%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VV              S   ++ V +       F           ++AV         
Sbjct: 63  AVVVDREVKELKKI----SGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVAV--------- 109

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                    ++          ST        R    +P  L   L    S          
Sbjct: 110 ----TGTSGKTTTKDMIKHILSTWYKVEGTVRSANGNPRNLIYLLRIDDSIQAAVYESAV 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            + G   +         G  TN+G DH++  +T Q Y NAK  +   +    +  +    
Sbjct: 166 GAPGDITYTCSHFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVSVIPEGGTLIL--NA 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D    + +  +   G  +              +   +N    T+++    +    P  G+
Sbjct: 224 DDEKIKTIDTSKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGK 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            QVYNAL A      +GI      + L    ++    E     ++   I   +   + SL
Sbjct: 284 HQVYNALAALAATHEMGIGITQAAQALSSFKLLMNHCEIKKGLNQATIIDDTWNINTASL 343

Query: 370 EMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDL-ADIAIVTDD 418
           +  +  +  +      V         G+        +GK+      D  I   D
Sbjct: 344 KAAMNTLCELNQQHKKVALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGD 397


>gi|300770836|ref|ZP_07080713.1| possible tetrahydrofolate synthase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762109|gb|EFK58928.1| possible tetrahydrofolate synthase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 436

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 59/401 (14%), Positives = 123/401 (30%), Gaps = 38/401 (9%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +    ++L  +    +     + + GT+GK S +  +  +   +G  +        +  
Sbjct: 28  KDLDNTIALCQALGNPQDKFKSIHIAGTNGKGSSSHMLASVLASAGYKTGLYTSPHLVDF 87

Query: 156 FAQDNRLT------------------------TPSPIYLAKALSYLSSQGVTHVSVEASS 191
             +                             +   + +A A  Y +   V    +E   
Sbjct: 88  RERIRVNGEVIPEQNVIEFVESQQSLIEKVQPSFFEVTVAMAFDYFAKAQVDVAIIEVGL 147

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G    RLD   +I      +    +D+                 ++   +P +I   D 
Sbjct: 148 GG----RLDSTNIIRPELCLITNIGMDHMNLLGNTLQEIAGEKAGIIKANTPVVISERDP 203

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            + +V +         +          +     +  K  VT ++      +   L G +Q
Sbjct: 204 RTAQVFEEIAEEKQAPIRFASDTMEATITSRHPVGMKVSVTDTMNSLTEQYDLDLTGSYQ 263

Query: 312 VYNALVAA-----GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           + N +           I   I S  + E L  +    G      T S    I  D  H  
Sbjct: 264 LKNVIGVLTAVEELNHINFTIPSDRLREGLSHVQQYTGLQGRWQTISTEPLIICDTGHNE 323

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDP 425
           + +  +LKN++      + +V G   D+D     P++ K A+          D PR+   
Sbjct: 324 DGIREVLKNLQLTPYEVLHIVMGAMKDKDLEHILPLLPKEAIYYFSS----PDMPRAMPA 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E++ A  +          + ++A   A +     D++ + G
Sbjct: 380 EELSAAALSYGLKGKPYPSVMQAFTAAKQAYQAGDLVFIGG 420


>gi|284039600|ref|YP_003389530.1| UDP-N-acetylmuramate/alanine ligase [Spirosoma linguale DSM 74]
 gi|283818893|gb|ADB40731.1| UDP-N-acetylmuramate/alanine ligase [Spirosoma linguale DSM 74]
          Length = 461

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 2/122 (1%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NA+ A  + + +G+    +   L     V  RFE     +       DYAH  
Sbjct: 283 PGFHNVENAVAAGAVALEVGVSPEAIRSALTSYRGVRRRFE-YILKTDSTVFIDDYAHHP 341

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDNPRSEDP 425
             +E  L +++ +   R I          + +    G   +L LAD  I+ D  P  E P
Sbjct: 342 AEVEAFLSSVKALYPNRDITAIFQPHLFSRTRDFADGFAESLSLADHVILLDIYPARELP 401

Query: 426 EK 427
            +
Sbjct: 402 ME 403


>gi|323497893|ref|ZP_08102902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
 gi|323316938|gb|EGA69940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
          Length = 441

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 82/441 (18%), Positives = 150/441 (34%), Gaps = 64/441 (14%)

Query: 27  ERKINEVSSDSRHIQAGWIFVAIV-GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSAT 85
           +  I     D+R    G    A+  G K        QA    A+ +V +   +L      
Sbjct: 34  DLTIK--VIDTRDNPPGQ--EALPSGVKLHSGS-WNQAWLFEADLVVANPGIALATPEIQ 88

Query: 86  IRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
                 + VV +         +    K    ++A+TG++GKS+V      + + +GL   
Sbjct: 89  KTLEAGVAVVGDI-----ELFAWQVDKP---VIAITGSNGKSTVTDLAGVVAKAAGLQVG 140

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G                   + L +  + L         +E SS  L+      + L 
Sbjct: 141 VGGNIGVP-------------ALELLEQPADL-------YVLELSSFQLET--TSSLNLK 178

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE--VMKRAHNA 263
           A +F NL  DH+D +   + Y  AK+R+FE        A   A      +  +++ +   
Sbjct: 179 AAAFLNLSEDHMDRYDGMEGYRQAKLRIFEHAESCIVNAQDKATYPEHFKGELVEFSLTD 238

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
             +      Q +    +    I    ++T+                  V NALV   L  
Sbjct: 239 KTQFSVQVQQNREYLCQDNLPILATDELTLVGRHN-------------VANALVVLALLD 285

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            +GID +  L  L+  + +  R + V  N     +    A    S    L  +    +G+
Sbjct: 286 CVGIDVSQGLSALKSYNGLTHRCQIVADNHGVKWVNDSKATNVASTLAALSGLTL--TGK 343

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + ++ G  G     K     ++A  LA + +        ED     A+ +   P   +  
Sbjct: 344 LYLLVGGVG-----KGADFSELAPVLAKLNV--QLCCFGEDG----AQFMALHPSAKQFT 392

Query: 444 NRIEAIRTAIEMLNKQDVLVV 464
           +  E +  A   L   D++++
Sbjct: 393 HMQEIVEWAKPQLTTGDMVLL 413


>gi|283957175|ref|ZP_06374639.1| hypothetical protein C1336_000800047 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791351|gb|EFC30156.1| hypothetical protein C1336_000800047 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 313

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       L+++ S+         +   + +   ++AG+ F        D    I
Sbjct: 1   MQISNLGELLNATLVHEGSVLS-------VEGFAINLNELKAGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ +GA AI+  +  +++D       +     V+N  + L  F            L  
Sbjct: 48  TQAVKKGAYAIITENDITIED------KDIFYFRVENLEQALVRFLRFFCEDKECEFLLF 101


>gi|78211584|ref|YP_380363.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9605]
 gi|109892751|sp|Q3ANM4|MURC_SYNSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78196043|gb|ABB33808.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. CC9605]
          Length = 469

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 83/238 (34%), Gaps = 24/238 (10%)

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEF 310
           +   +++          +   +        +    ++        G+   DF  P+ G  
Sbjct: 224 HDCPILQEHFQPTAWWSNQSDESVDFAALPLSLDGDRCVARFYEAGQPVGDFTLPMAGLH 283

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            + NA  A   C   G+    ++E L  L     RF+  G   +G  I  DYAH  + ++
Sbjct: 284 NLSNATGALAACRMEGLPFNQLVEGLAGLKAPGRRFDLRG-TWKGRHIVDDYAHHPSEVQ 342

Query: 371 MILKNIRTIT----------SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN 419
             L+  R +             R++ VF       + ++ + G   AL   D+ ++    
Sbjct: 343 ATLEMARLMVRSGRSPLPSAPQRLLAVF-QPHRYSRTRQFLDGFAKALQNCDLLLLAPVY 401

Query: 420 PRSEDP-EKIRAEIIHGIPGFIEKGNRIEAI--------RTAIEMLNKQDVLVVAGKG 468
           P  E P + I +  +      ++  +   A+           I+   + D+++  G G
Sbjct: 402 PAGEQPLQGISSNALADRVRKLK-PDLEIAVAENLDQLTELVIQHSLENDLVLAMGAG 458


>gi|182677683|ref|YP_001831829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633566|gb|ACB94340.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 462

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 110/386 (28%), Gaps = 65/386 (16%)

Query: 61  PQAIAQG-AEAIVVSSAYSLQDFSATIRSNT--------------------------PIL 93
            QA+  G AE  V     S ++ +                                 P  
Sbjct: 25  AQALKAGGAEVAVWDDKDSARETAKAKGLEVLDLSQADWSQFCALVLAPGVPLTHPKPHW 84

Query: 94  VVDNTRKF----LSLFASRLYGK----HPENILAVTGTSGKSSVASFVQQICQRSGLSSF 145
            V+  R      +         +         +A+TGT+GKS+  + V  + Q  G    
Sbjct: 85  TVEKARAAGIEIIGDIELFCRERRLIAPKSPFVAITGTNGKSTTTALVAHLFQTFGYEVA 144

Query: 146 QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI 205
             G   T     +    T                       +E SS  +D      +   
Sbjct: 145 IGGNIGTPILALEPPSPT-------------------RVHVIECSSFQIDL--TPTLDPW 183

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
            G   N+  DH+D H T + Y      +   L+     A+I  DD     + +       
Sbjct: 184 VGVLLNITPDHLDRHGTMENY----AAIKARLVMGADKAVICLDDEPCVAIAETLRQKHK 239

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTI--SVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
               V      +    +       +     SV   D   +  L G     NA  A     
Sbjct: 240 PSTFVSISHPELRDGIILDGTTLVRHVDGGSVVIADLAGIASLRGRHNGQNAAAAVAALG 299

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
           A G +  LV + LE    +P R E VG       +    A  +++ E  L +   I    
Sbjct: 300 AHGYNLDLVRKGLESFPGLPHRLEEVGRLGNVLFVNDSKATNADAAEKALLSFENIFW-- 357

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDL 409
            I+            RP+ GKIA   
Sbjct: 358 -ILGGKPKAGGIDPLRPLFGKIAKGY 382


>gi|254253658|ref|ZP_04946975.1| Folylpolyglutamate synthase [Burkholderia dolosa AUO158]
 gi|124898303|gb|EAY70146.1| Folylpolyglutamate synthase [Burkholderia dolosa AUO158]
          Length = 436

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 126/398 (31%), Gaps = 42/398 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDN 160
               + L       ++ V GT+GK S  +F++ I  R+G              +  A+ N
Sbjct: 30  GKVKAALQLDFACPVITVGGTNGKGSTCAFLETILVRAGYKVGCHTSPHLLEFNERARVN 89

Query: 161 RLTTPSPIYLAKALSYLSSQ----------GVTHVSVEA----SSHGLDQHRLDGIKLIA 206
             T      L    +  +++               ++      +S GLD   L+      
Sbjct: 90  GQTVSDAELLPHFEAVEAARTSLPEPVSLTYFEFTTLAILHLFASRGLDAVILEVGLGGR 149

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-------EVMKR 259
               N+         +        +    E +  E   I  A              +++ 
Sbjct: 150 LDAVNVIDTDCAIVTSIDIDHTEYLGDTREKIAFEKAGIFRAGKPAICGDPAAPSTLVEH 209

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   G  +  VG   ++                                +    +A +AA
Sbjct: 210 AQAIGADLWLVGRDFRYEAQPGAERQQWSYLGRDKRYPALAYPALRGANQLINASAALAA 269

Query: 320 GLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
              +   +  +     L   +V  PGRF+ +        I +D AH  ++  ++ +N+  
Sbjct: 270 LEALRPQLPVSAQDIRLGLANVELPGRFQVLPGKPA---IVLDVAHNPHAAAVLEQNLGN 326

Query: 379 I-TSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-I 433
           +        VFG   D+D     R + G+I     D   VTD   PR+   E++ A +  
Sbjct: 327 MGFFPYTYAVFGAMHDKDIDGVLRHLKGEI-----DHWCVTDLPLPRAASAEQLEAALRK 381

Query: 434 HGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            G+               +A R A++  ++ D +VV G
Sbjct: 382 AGVEDGPDSSVTRFAAPADAFRDALKRASENDRIVVFG 419


>gi|330003489|ref|ZP_08304644.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328536942|gb|EGF63238.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 457

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 97/359 (27%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       Q   +
Sbjct: 203 QFHHLVRIVPGKGKIILPENDINLKQVMAMGCWSEQELVGEQGHWQAKKLNADASQWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L+ +R    G  RI+ V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEP-----RSNTMKMGVCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +       +        ++  +  D ++V
Sbjct: 377 SLGRADEVFLLQPQH---IPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV 432


>gi|315029682|gb|EFT41614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4000]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 90/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +D       +       +  +              A     ++  + E         +
Sbjct: 218 -VEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|257421242|ref|ZP_05598232.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis X98]
 gi|257163066|gb|EEU93026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis X98]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 90/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +D       +       +  +              A     ++  + E         +
Sbjct: 218 -VEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|229546840|ref|ZP_04435565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX1322]
 gi|229548934|ref|ZP_04437659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis ATCC 29200]
 gi|255971447|ref|ZP_05422033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T1]
 gi|256617917|ref|ZP_05474763.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ATCC 4200]
 gi|256761751|ref|ZP_05502331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T3]
 gi|256852646|ref|ZP_05558017.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T8]
 gi|256962581|ref|ZP_05566752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis HIP11704]
 gi|257089402|ref|ZP_05583763.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis CH188]
 gi|307272007|ref|ZP_07553273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0855]
 gi|307290045|ref|ZP_07569969.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0411]
 gi|312904555|ref|ZP_07763713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0635]
 gi|229305955|gb|EEN71951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis ATCC 29200]
 gi|229308005|gb|EEN73992.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX1322]
 gi|255962465|gb|EET94941.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T1]
 gi|256597444|gb|EEU16620.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ATCC 4200]
 gi|256683002|gb|EEU22697.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T3]
 gi|256711991|gb|EEU27028.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T8]
 gi|256953077|gb|EEU69709.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis HIP11704]
 gi|256998214|gb|EEU84734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis CH188]
 gi|306498887|gb|EFM68381.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0411]
 gi|306511302|gb|EFM80306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0855]
 gi|310632068|gb|EFQ15351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0635]
 gi|315156842|gb|EFU00859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0043]
 gi|315157628|gb|EFU01645.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0312]
 gi|315577391|gb|EFU89582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0630]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 90/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +D       +       +  +              A     ++  + E         +
Sbjct: 218 -VEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|320172821|gb|EFW48053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae CDC 74-1112]
          Length = 438

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALVHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|319941793|ref|ZP_08016115.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804726|gb|EFW01593.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
          Length = 508

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 129/407 (31%), Gaps = 44/407 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFAS-RLYGKHPENILAVTGTSG 125
           GA A V +SA          ++  PI  V     F    A  +    +   ++ +TGT+G
Sbjct: 96  GAAASVCASA---------RKAGIPI--VGEIELFAQELAYLKRTQGYAPKVIGITGTNG 144

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  +   ++   +GL +   G     +                    +  +       
Sbjct: 145 KTTTTTLTTKMAAAAGLYAVAAGNIGPNAVAELSK--------------AEAAGALPDIW 190

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES--- 242
            +E SS  L+      +   + +  N+  DH+D+H + +AY +AK R+F     +     
Sbjct: 191 VLELSSFQLET--THTLNCTSAALLNITEDHLDWHGSIEAYAHAKGRIFAPDTVRVVNRE 248

Query: 243 ----PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A +   D       +       +    G  G  +            +  + V+  
Sbjct: 249 DPLVMAELEKVDDREHSAARCFTFGATKPQKEGELGLMMAAHASQGYWLGLRDQMEVDVL 308

Query: 299 DFDFLFPLPGEFQV-YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  L        NAL A GL    GI++   +  L      P R E V T      
Sbjct: 309 FLPEFELLIRGRHNAMNALAALGLITGAGIETRPAIGVLRTYRGEPHRVELVRTIEGRDF 368

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
           I         ++   +  +     GR I++   G  + Q   P+  ++   +A  A++  
Sbjct: 369 IDDSKGTNVGAVAAAVCGLAA--QGRRILILMGGDGKGQDFTPLAKELKGRVAFAALI-- 424

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 D  KIR  +               A     E     D +++
Sbjct: 425 ----GRDAAKIREAVSPAGVATETFKTLEAAEDWLWEKSRPGDQILL 467


>gi|289548045|ref|YP_003473033.1| FolC bifunctional protein [Thermocrinis albus DSM 14484]
 gi|289181662|gb|ADC88906.1| FolC bifunctional protein [Thermocrinis albus DSM 14484]
          Length = 410

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 118/397 (29%), Gaps = 46/397 (11%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           +V    + +               + + GT+GK S  +FV++I +  GL +        +
Sbjct: 14  IVPTLDRIMKAAKYAGLSPPSYPSIQIGGTNGKGSTCAFVERILREHGLKTGWFVSPHLV 73

Query: 154 SSFAQD-------------------------NRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +                            LT      L  AL Y   + V     E
Sbjct: 74  EERERWRVNGQYMPQERLREYVKELSGIIERFELTYFEACTLL-ALRYFEDEKVDVAVFE 132

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
               G           +  + TN+ RDH+ +  T       +              +   
Sbjct: 133 VGMGG-RWDATKVCMPVVCAITNVERDHVRWLGTNPESRAEEKLGIYR--EGFPLVLGSM 189

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                 + ++        V  V +Q           + +     + +             
Sbjct: 190 RYPLYPKALELCRQEDLVVAGVDFQAYGKVEGDTTLLESFVGERLKISNTPLGLWGK--- 246

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
            +Q+ NA +A  +           ++         GR E +        + VD AH  +S
Sbjct: 247 -WQIGNAGIALAVVERFIQPEEEKVKRALTSTRWEGRMEILRRK---PLLMVDGAHNVDS 302

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEK 427
           ++ +++ ++    G ++ VF    D++  +     +      D   +    + R ED  +
Sbjct: 303 IKKVVQEVKKHIKG-VVPVFSALRDKEWEESITFLRTVW---DRIYLVPIKHHRGEDISR 358

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +       F E      A+   + +  K+D+LV+
Sbjct: 359 LLQKAKE--LNFKEIVLLESAMD-VVSL--KEDLLVI 390


>gi|212635043|ref|YP_002311568.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella piezotolerans
           WP3]
 gi|226711874|sp|B8CNL2|MURC_SHEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212556527|gb|ACJ28981.1| UDP-N-acetylmuramate-alanine ligase [Shewanella piezotolerans WP3]
          Length = 489

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 98/282 (34%), Gaps = 16/282 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D +             F   LP    A++  DD   +E++ R 
Sbjct: 186 HLQPMVSVVTNIEADHMDTYGGDIEKLKNTFVDFIHNLPFYGVAVVCIDDPIVRELLPRF 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                     G       +      ++ Q         D +    LPGE  V NAL A  
Sbjct: 246 SR-KVVTYGFGDDADVQAVGFTQTGYSSQFTVRRSGVADLNLSVNLPGEHNVLNALAAIA 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIR 377
           +     I+   +++ L +   +  RF+ VG         ++  DY H  + +   +K  R
Sbjct: 305 VASEDDIEDEAIIKALAEFQGIGRRFQQVGDFETAKGEVKLVDDYGHHPSEVAATIKAAR 364

Query: 378 TITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE------DPEKIR 429
                R +V+        + +       ++     D  ++ D     E      D   + 
Sbjct: 365 QGWPERRLVMIYQPHRYSRTRDLYEDFVEVLSQ-VDCLLLLDVYAAGEAAIPGADSRALC 423

Query: 430 AEII-HGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKGH 469
             I   G    +   +  + ++T + E+L   D+L+  G G+
Sbjct: 424 RSIRVRGQLEPVFVASTEQ-LQTVLPEILQNGDLLLTQGAGN 464


>gi|157963621|ref|YP_001503655.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella pealeana ATCC
           700345]
 gi|189082500|sp|A8H983|MURC_SHEPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157848621|gb|ABV89120.1| UDP-N-acetylmuramate--alanine ligase [Shewanella pealeana ATCC
           700345]
          Length = 489

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 67/201 (33%), Gaps = 4/201 (1%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D ++            F   LP    A++  DD   +E++ R 
Sbjct: 186 HLQPMVSVVTNIEADHMDTYEGDLEKLKTTFVDFLHNLPFYGVAVVCIDDPIVRELIPRI 245

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                               K      +  V       D      LPGE  V N+L A  
Sbjct: 246 GRRIVTYGFSEDADVRALDFKQTGYSCEFTVR-RAGMDDLQLSVNLPGEHNVLNSLAAIA 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIR 377
           +     I+   ++  L     +  RF+ +G  +      ++  DY H  + +   +K  R
Sbjct: 305 VATEDEIEDEAIITALADFQGIGRRFQQIGEFTTAKGEIKLVDDYGHHPSEVAATIKAAR 364

Query: 378 TITSGRIIVVFGCGGDRDQGK 398
                R +V+        + +
Sbjct: 365 LGWPERRLVMIYQPHRYSRTR 385


>gi|299856869|pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
           SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92
 gi|302148870|pdb|3NRS|A Chain A, Crystal Structure Of Ligand-Free Bifunctional
           Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM
           YERSINIA PESTIS C092
 gi|319443819|pdb|3PYZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
           SynthaseDIHYDROFOLATE SYNTHASE COMPLEXED WITH AMPPNP AND
           MN ION FROM Yersinia Pestis C092
 gi|321160049|pdb|3QCZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
           SynthaseDIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND
           L-Glutamate Bound
          Length = 437

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 23/198 (11%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEK 338
                  ++Q      +  +            + NA  A  +     +      +    +
Sbjct: 238 FDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQ 297

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-------SGRIIVVFGCG 391
              +PGRF+ V        + +D AH  ++   ++  +  +         G++  V G  
Sbjct: 298 AASLPGRFQVVSEQPL---LILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGML 354

Query: 392 GDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D       G +A   +  D       + PR         ++   +    +  +   A
Sbjct: 355 SDKDIA-----GTLACLSERVDEWYCAPLEGPRG----ASAGQLAEHLVSARQFSDVETA 405

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++  + QDV++V G
Sbjct: 406 WRQAMQDADTQDVVIVCG 423


>gi|289805212|ref|ZP_06535841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 391

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 95/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 36  DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 92

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 93  ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 136

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 137 QFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDTSEWEVW 196

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 197 LDGEKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 255

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL  
Sbjct: 256 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDLAP 310

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +      G+        ++     D ++V
Sbjct: 311 SLGRADEVFLLQPPH---IPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV 366


>gi|167399293|ref|ZP_02304817.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167051797|gb|EDR63205.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 422

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 23/198 (11%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEK 338
                  ++Q      +  +            + NA  A  +     +      +    +
Sbjct: 223 FDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQ 282

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-------SGRIIVVFGCG 391
              +PGRF+ V        + +D AH  ++   ++  +  +         G++  V G  
Sbjct: 283 AASLPGRFQVVSEQPL---LILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGML 339

Query: 392 GDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D       G +A   +  D       + PR         ++   +    +  +   A
Sbjct: 340 SDKDIA-----GTLACLSERVDEWYCAPLEGPRG----ASAGQLAEHLVSARQFSDVETA 390

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++  + QDV++V G
Sbjct: 391 WRQAMQDADTQDVVIVCG 408


>gi|22125497|ref|NP_668920.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis KIM 10]
 gi|45442184|ref|NP_993723.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|21958393|gb|AAM85171.1|AE013763_5 dihydrofolate:folylpolyglutamate synthetase [Yersinia pestis KIM
           10]
 gi|45437048|gb|AAS62600.1| putative FolC bifunctional protein [Yersinia pestis biovar Microtus
           str. 91001]
          Length = 460

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 23/198 (11%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEK 338
                  ++Q      +  +            + NA  A  +     +      +    +
Sbjct: 261 FDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQ 320

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-------SGRIIVVFGCG 391
              +PGRF+ V        + +D AH  ++   ++  +  +         G++  V G  
Sbjct: 321 AASLPGRFQVVSEQPL---LILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGML 377

Query: 392 GDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D       G +A   +  D       + PR         ++   +    +  +   A
Sbjct: 378 SDKDIA-----GTLACLSERVDEWYCAPLEGPRG----ASAGQLAEHLVSARQFSDVETA 428

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++  + QDV++V G
Sbjct: 429 WRQAMQDADTQDVVIVCG 446


>gi|51596934|ref|YP_071125.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pseudotuberculosis IP 32953]
 gi|108808070|ref|YP_651986.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis Antiqua]
 gi|108812340|ref|YP_648107.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis Nepal516]
 gi|145599270|ref|YP_001163346.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis Pestoides F]
 gi|149365243|ref|ZP_01887278.1| putative FolC bifunctional protein [Yersinia pestis CA88-4125]
 gi|153946898|ref|YP_001400402.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pseudotuberculosis IP 31758]
 gi|162420180|ref|YP_001604966.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis Angola]
 gi|165925178|ref|ZP_02221010.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937105|ref|ZP_02225670.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008332|ref|ZP_02229230.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166214243|ref|ZP_02240278.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167421185|ref|ZP_02312938.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424419|ref|ZP_02316172.1| FolC bifunctional protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469036|ref|ZP_02333740.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis FV-1]
 gi|186896015|ref|YP_001873127.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pseudotuberculosis PB1/+]
 gi|218929841|ref|YP_002347716.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis CO92]
 gi|229838339|ref|ZP_04458498.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895369|ref|ZP_04510542.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis Pestoides A]
 gi|229898905|ref|ZP_04514050.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902695|ref|ZP_04517812.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis Nepal516]
 gi|270490130|ref|ZP_06207204.1| bifunctional protein FolC [Yersinia pestis KIM D27]
 gi|294504646|ref|YP_003568708.1| putative FolC bifunctional protein [Yersinia pestis Z176003]
 gi|51590216|emb|CAH21853.1| dihydrofolate synthase / folylpolyglutamate synthase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775988|gb|ABG18507.1| FolC bifunctional protein [Yersinia pestis Nepal516]
 gi|108779983|gb|ABG14041.1| putative FolC bifunctional protein [Yersinia pestis Antiqua]
 gi|115348452|emb|CAL21388.1| putative FolC bifunctional protein [Yersinia pestis CO92]
 gi|145210966|gb|ABP40373.1| FolC bifunctional protein [Yersinia pestis Pestoides F]
 gi|149291656|gb|EDM41730.1| putative FolC bifunctional protein [Yersinia pestis CA88-4125]
 gi|152958393|gb|ABS45854.1| FolC bifunctional protein [Yersinia pseudotuberculosis IP 31758]
 gi|162352995|gb|ABX86943.1| FolC bifunctional protein [Yersinia pestis Angola]
 gi|165914968|gb|EDR33580.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922785|gb|EDR39936.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992714|gb|EDR45015.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204599|gb|EDR49079.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960674|gb|EDR56695.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167056301|gb|EDR66070.1| FolC bifunctional protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|186699041|gb|ACC89670.1| FolC bifunctional protein [Yersinia pseudotuberculosis PB1/+]
 gi|229680142|gb|EEO76241.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis Nepal516]
 gi|229688453|gb|EEO80524.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694705|gb|EEO84752.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701677|gb|EEO89703.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis Pestoides A]
 gi|262362707|gb|ACY59428.1| putative FolC bifunctional protein [Yersinia pestis D106004]
 gi|262366634|gb|ACY63191.1| putative FolC bifunctional protein [Yersinia pestis D182038]
 gi|270338634|gb|EFA49411.1| bifunctional protein FolC [Yersinia pestis KIM D27]
 gi|294355105|gb|ADE65446.1| putative FolC bifunctional protein [Yersinia pestis Z176003]
 gi|320014569|gb|ADV98140.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 434

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 23/198 (11%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEK 338
                  ++Q      +  +            + NA  A  +     +      +    +
Sbjct: 235 FDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQ 294

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-------SGRIIVVFGCG 391
              +PGRF+ V        + +D AH  ++   ++  +  +         G++  V G  
Sbjct: 295 AASLPGRFQVVSEQPL---LILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGML 351

Query: 392 GDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D       G +A   +  D       + PR         ++   +    +  +   A
Sbjct: 352 SDKDIA-----GTLACLSERVDEWYCAPLEGPRG----ASAGQLAEHLVSARQFSDVETA 402

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++  + QDV++V G
Sbjct: 403 WRQAMQDADTQDVVIVCG 420


>gi|284801997|ref|YP_003413862.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5578]
 gi|284995139|ref|YP_003416907.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5923]
 gi|284057559|gb|ADB68500.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5578]
 gi|284060606|gb|ADB71545.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5923]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 111/350 (31%), Gaps = 47/350 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +   +            +   +   +  +   T+  + 
Sbjct: 115 TTGLLSHVVGAIRPTSYLIGDGTGSGTKDAKY-----FALEACEYQRHFLAYKPTYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 169 ---------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K   +        G + +F     +      +      E     F  P  G
Sbjct: 204 GDDAE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V + L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVDDVKKELKTFEGVKRRFSIT--EKGNQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD 417
           +   +   R     + +V         + +  + G   +L+LAD   + D
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCD 369


>gi|306968292|ref|ZP_07480953.1| hypothetical protein TMIG_00825 [Mycobacterium tuberculosis
          SUMu009]
 gi|308354098|gb|EFP42949.1| hypothetical protein TMIG_00825 [Mycobacterium tuberculosis
          SUMu009]
          Length = 52

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 5  DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVG 51
          +L      E++      I P     R++   V  DSR I  G +F+A+ G
Sbjct: 3  ELTVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPG 52


>gi|317129971|ref|YP_004096253.1| UDP-N-acetylmuramate/alanine ligase [Bacillus cellulosilyticus DSM
           2522]
 gi|315474919|gb|ADU31522.1| UDP-N-acetylmuramate/alanine ligase [Bacillus cellulosilyticus DSM
           2522]
          Length = 435

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 123/399 (30%), Gaps = 56/399 (14%)

Query: 72  VVSSAYSLQD--FSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           + S AY+ ++    A +  N P+    N   FL  F  +         +AVTG+ GK+S 
Sbjct: 65  IASPAYNEENEEIKAAMEQNIPVNKYPN---FLGEFIQQFTS------IAVTGSHGKTST 115

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              +  + Q +  +S+ IG  +       +            +   +       +  +  
Sbjct: 116 TGLLAHVLQEAKPTSYLIGDGTGKGEKDSEY-----FVFEACEYRRHFLHYSPDYAIM-- 168

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  DH DY    Q  F+A       +  +    II   
Sbjct: 169 --------------------TNIDFDHPDYFSGVQDVFDAFQE----MAMQVKKGIIACG 204

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D    + +           +  +     +++      +      S     F    P  G+
Sbjct: 205 DDNYLQQLNAQVPVVYYGFNEEHDFCGKNIRSDENGTHFDVYVRSSFYGSF--TIPGYGK 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL    LC    +D  ++   L     V  RF           +  DYAH    +
Sbjct: 263 HNVLNALAVIALCKYEEVDINIIQSRLITFSGVKRRF--SEKLVGNQVLIDDYAHHPTEI 320

Query: 370 EMILKNIRTITSGRI-IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPE 426
            + +   R     R  I VF      R +          L  AD   + D  +   E+  
Sbjct: 321 AVTIDATRKKYPNREVIAVFQPHTFTRTKTFLDEFAN-CLQAADKVFLCDIFSSARENKG 379

Query: 427 KI-RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +   +++  IP         E I    ++   +D +++
Sbjct: 380 DLSIQDLLELIPDASTIS--EETID---QLSKYEDAVIL 413


>gi|219871375|ref|YP_002475750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Haemophilus parasuis SH0165]
 gi|219691579|gb|ACL32802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Haemophilus parasuis SH0165]
          Length = 462

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 75/270 (27%), Gaps = 18/270 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A    +       +P+    +    D   +  +K  
Sbjct: 178 HYNPKTLIINNIDFDHADIFDDLKAIQR-QFHHLIRTMPQNGCILSATSDENVQNTLKMG 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +  + +          L                + K  +  + L G   ++N L+A  
Sbjct: 237 CYSEQQFIGQDQDWYAEPLSS----DYSHFAIYHKQQKAGEVEWNLLGAHNMHNGLMAIA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+        L        R E  G    G  +Y D+AH   ++   +  +R   
Sbjct: 293 AAHHAGVSVEQACLGLNSFINANRRLEVKG-EVNGITVYDDFAHHPTAILATIDALRGKV 351

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG----KIALDL--ADIAIVTDDNPRSEDPEKIRAEIIH 434
                ++       +  K   MG    +IA  L  AD   V   +        I   +  
Sbjct: 352 GKEQRILAVLEPRSNTMK---MGVHKEEIAPSLKDADAVFVYQPDTIPWQVSTITDALSQ 408

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    +  E +   ++     D ++V
Sbjct: 409 PAQWS---ASLDELVELIVKEAKPTDHILV 435


>gi|184156343|ref|YP_001844682.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|183207937|gb|ACC55335.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078397|gb|ABO13369.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter baumannii
           ATCC 17978]
 gi|323516088|gb|ADX90469.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 457

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 89/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +GT + G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTIN-GIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIEAATNHAQVSRSLDEIIERIVNEAGEGDAVVI 435


>gi|315124354|ref|YP_004066358.1| hypothetical protein ICDCCJ07001_806 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315018076|gb|ADT66169.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 286

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 19/113 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++AG+ F        D    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKAGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
            QA+ +GA AI+  +  +++D       +     V+N  + L  F        
Sbjct: 48  TQAVKKGAYAIITENDITIED------KDIFYFRVENLEQALVRFLRFFCEDK 94


>gi|222099495|ref|YP_002534063.1| Folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga
           neapolitana DSM 4359]
 gi|61657323|emb|CAI44242.1| folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga
           neapolitana]
 gi|221571885|gb|ACM22697.1| Folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga
           neapolitana DSM 4359]
          Length = 431

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RFE       G R  +D AH  +    ++K+++      + ++ G   D+D   R  + K
Sbjct: 295 RFEV--IEKDGKRFILDGAHNPHGARSLVKSLKLYFKEPLNLIIGVLDDKD---RAGILK 349

Query: 405 IALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              ++ D  ++T   +PR +D +   A     +       + +EA    +++  ++ V V
Sbjct: 350 EYRNVFDRIVLTRVPSPRMKDFDGFVALAKEILGNVDVIEDPLEA----LKIAEEKSVTV 405

Query: 464 VAG 466
           V+G
Sbjct: 406 VSG 408


>gi|61657411|emb|CAI44326.1| folylpolyglutamate synthase/dihydrofolate synthase [Thermotoga sp.
           RQ7]
          Length = 430

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           RFE       G R  +D AH  +    ++K+++      + ++ G   D+D   R  + K
Sbjct: 295 RFEV--IEKDGKRFILDGAHNPHGARSLVKSLKLYFKEPLNLIIGVLDDKD---RAGILK 349

Query: 405 IALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
              ++ D  ++T   +PR +D +   A     +       + +EA    +++  ++ V V
Sbjct: 350 EYRNVFDRIVLTRVPSPRMKDFDGFVALAKEILGNVDVIEDPLEA----LKIAEEKSVTV 405

Query: 464 VAG 466
           V+G
Sbjct: 406 VSG 408


>gi|329896223|ref|ZP_08271401.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC3088]
 gi|328921894|gb|EGG29261.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC3088]
          Length = 452

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 111/352 (31%), Gaps = 28/352 (7%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV+GT GK++ +S +  + + +GL    +      ++F    RL           
Sbjct: 104 DRWVLAVSGTHGKTTTSSLLAWMLEEAGLQPGFL-IGGVTANFGVSARLG-------QDP 155

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              + +        +  S  L  H             NL  DH D   + +        L
Sbjct: 156 FFVIEADEYDTAFFDKRSKFLHYH------PRTLILNNLEFDHADIFDSLEDIQRQFHHL 209

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +             A    + +          +          +       +    I
Sbjct: 210 LRVVPSLGQVIYPVGVAAIDDVLARGLWAQSETFGADASAQWQYQWRN----QGRGDFRI 265

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +++   PL G++ + NAL A      +G+     +  L        R E +    
Sbjct: 266 TQGNNEWEGSTPLSGDYNLSNALAAIIAARHVGVSPEHSIAALATFKNTKRRQELIA-EV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA 413
            G ++  D+AH   ++ + L+ ++       +V+      R    R  MG  A  LAD  
Sbjct: 325 GGIQVIDDFAHHPTAIRLTLEGLKASHHNSRLVLIIEP--RSNTMR--MGVHANALADA- 379

Query: 414 IVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             T   D       + +  ++   + G     +  + +   +  L   DV+V
Sbjct: 380 --TRPADQCYWLRAKNMGFDLTSDLVGGQVFDDVDQLVAKLVPELAPTDVVV 429


>gi|114327092|ref|YP_744249.1| UDP-N-acetylmuramate--L-alanine ligase [Granulibacter bethesdensis
           CGDNIH1]
 gi|122327926|sp|Q0BV26|MURC_GRABC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114315266|gb|ABI61326.1| UDP-N-acetylmuramate--alanine ligase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 481

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 126/432 (29%), Gaps = 56/432 (12%)

Query: 56  GHLFIPQAIAQG-AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGK 112
           GH     A   G A+ +V+SSA    +          I VV   R+   L+         
Sbjct: 59  GHD----AANLGTAQVVVISSAVGRDNPEVAAARAKLIPVV---RRAEMLAELMRL---- 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                    G +   +  + +      +      +     I+++  + RL          
Sbjct: 108 ---KWAVAVGGTHGKTTTTSLIAAVLEAAQLDPTVINGGIINAYGTNTRLGAGE------ 158

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                       + VEA        RL  +       TN+  +H+D+  T +A   A  +
Sbjct: 159 -----------WMVVEADESDGSFLRLPAVI---AVVTNMDPEHLDHWGTAEAME-AGYQ 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK------FIHLKKVCAIH 286
            F   +P    A++  D    ++++ +  +          Q                   
Sbjct: 204 QFVSNIPFYGFAVLCIDHPTVQKMIPQLSDHRIITYGFSPQADVRAERINTDKFGATFEV 263

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                      +      P+ GE  + N L A  + + +GI  +++         V  RF
Sbjct: 264 VITDRQTRRTRRTPPLRLPMLGEHNIANTLAAIAVAVEMGISDSVLQSAFASFKGVKRRF 323

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
              G  + G  I  DY H    +  +L+  R   +  +I V      R      +  +  
Sbjct: 324 TKTG-ETGGITIIDDYGHHPVEIAAVLRAARQAGARDVIAVV--QPHRYSRLASLFNEFC 380

Query: 407 LDLADI--AIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLN 457
             + D    IV D     E P      + +   +   G    +              +  
Sbjct: 381 TCMNDAGTVIVADVYNAGESPIEGVDRDSLVDGLRTSGHKSVVPLPGPEHLAEMIHAIAR 440

Query: 458 KQDVLVVAGKGH 469
             D +V  G G+
Sbjct: 441 PGDFVVCLGAGN 452


>gi|15602005|ref|NP_245077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|30316119|sp|Q9CPB0|MURD_PASMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12720355|gb|AAK02224.1| MurD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 434

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 115/356 (32%), Gaps = 48/356 (13%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +  + I+A+TG++GKS+V S V  +   +GL     G                   +
Sbjct: 100 FCREAKKPIIAITGSNGKSTVTSLVAHMVNAAGLKVGMGGNIGIP-------------AL 146

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L +    +         +E SS  L+      +K  + +  N+  DH++ +   + Y  
Sbjct: 147 SLLEQAHDM-------YVLELSSFQLET--TYSLKATSATVLNISEDHMNRYVDLEDYRQ 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK++++         A           +                   ++  +K  +    
Sbjct: 198 AKLKIYHHAQTAVINAE--------DALTAMDGLKNGVSFGEDNADYWLKTEKGRSYLMA 249

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +   +            L G     NAL A  L  A GI    +   L + + +  RF+ 
Sbjct: 250 KDERVL-----ACDEMKLVGRHNYMNALAAIALAQAAGIPLESIRRALREFNGLDHRFQL 304

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                    +    A    S    L  ++   +G + ++ G  G     K     ++A  
Sbjct: 305 AHFAHGVRWVNDSKATNVGSTVAALTGLQL--NGTLHLLLGGDG-----KGADFSELASL 357

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +    I+       +D E++ A      P         EAI      L+  D++++
Sbjct: 358 INQPNIIC--YCFGQDGEQLAAL----SPRSQRFSTMEEAINALRPTLSAGDMVLL 407


>gi|315149516|gb|EFT93532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0012]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD       +       +  +              A     ++  + E         +
Sbjct: 218 -ADDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSGKDDTILL 424


>gi|152968676|ref|YP_001333785.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|330012006|ref|ZP_08307223.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
 gi|166224697|sp|A6T4N4|MURC_KLEP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150953525|gb|ABR75555.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328533995|gb|EGF60647.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
          Length = 491

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 120/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  +          PG     N
Sbjct: 238 ELLPRVGRQITTYGFSDDADVRVEDYR-QVGAQGHFRLVRQDKAILQVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDRAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAMLIDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMVFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +A      +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKVDPILVPDSTQAAEMLASVLTGNDLVLVQGAGN 467


>gi|320183625|gb|EFW58468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           CDC 796-83]
          Length = 438

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 136/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+       K +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSWKAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLL 410


>gi|126696889|ref|YP_001091775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543932|gb|ABO18174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 476

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 49/306 (16%), Positives = 92/306 (30%), Gaps = 32/306 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS +      +        I       K +             N + +TGT+GK++V 
Sbjct: 81  VVVSPSIPYDHKTIIELKKKGI-------KVIGEINVAWEILKDTNWIGITGTNGKTTVT 133

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  +   +GL +   G   T                 L K       + +  V  E S
Sbjct: 134 HLLSHMLCDTGLYAPFAGNIGTP----------------LCKYAHSKKHEKIDWVVAELS 177

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++      +K   G +T    DH++ H+T + YFN   +   E            + 
Sbjct: 178 SYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFN-IKKSLLEKSDFRIYNYDDKNL 234

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 + R                   +     I  + +    +E      +  L    
Sbjct: 235 RNHYTSLSRGVWITTSFDKSNLIHCDYWIDDQAYIVERGKKLFKLEHFSLKGMHNL---- 290

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L+       +G+    + + L     +P R E +  N+    I    A   +S  
Sbjct: 291 --QNLLLVIAAARKVGLSGKKIKDSLSNYKQLPHRMETIYKNNDLEIINDSKATNFDSSI 348

Query: 371 MILKNI 376
             + +I
Sbjct: 349 AGISSI 354


>gi|119469212|ref|ZP_01612196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
 gi|119447464|gb|EAW28732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
          Length = 444

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 60/395 (15%), Positives = 122/395 (30%), Gaps = 53/395 (13%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I+VS   SL+  +     N+ + V+ +         +R+  K    ++AVTG++GKS+V 
Sbjct: 75  IIVSPGLSLKTPAIASAINSGVEVIGDV-----ELFARINTKP---VVAVTGSNGKSTVV 126

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           +    + + +G +    G   T      ++                          +E S
Sbjct: 127 TLAYDVLKAAGFNVALGGNIGTAVLDLLND--------------------DFDVYVLELS 166

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD      +K ++ +  N+  DH+D + + Q    A +     +       ++  DD
Sbjct: 167 SFQLDT--TTSLKSVSATVLNVSEDHLDRYDSYQ----AYIDSKLSIYNGTQCIVVNEDD 220

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
             +      A          G      H        N +                + G+ 
Sbjct: 221 KQTHPSSSSATAKIGFGTQQGKYCLGQHNCSTYFFANNEAFLPVD-------TLAVVGKH 273

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L    L     I      + L +   +  R +FV             A    +  
Sbjct: 274 NYLNTLAVMALLSPFNISKEAYKKALNEFSGLAHRCQFVTQQHGVKYFNDSKATNVGATI 333

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             + ++ T T    ++V   G  +     P+            I    +           
Sbjct: 334 AAIDSLATETQN--LIVIAGGDAKGADLNPLKP-YLQKHVKALICFGKD---------AK 381

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +++          N  EA+  A ++ +  +V+++A
Sbjct: 382 KLVALSSKSHLTNNMSEAVNLAKQLSSPGNVVLLA 416


>gi|325578823|ref|ZP_08148870.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159647|gb|EGC71779.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 437

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 60/399 (15%), Positives = 125/399 (31%), Gaps = 61/399 (15%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   +++        +  + V+ +                 + I+ +TG++GKS+V
Sbjct: 69  IIVISPGLAVKIPEIQTALSAGVEVIGDIE--------LFCRAATKPIVGITGSNGKSTV 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ + +G+     G                   + L        ++      +E 
Sbjct: 121 TTLVYEMAKAAGIKVGMGGNIGIP-------------ALSL-------LNEDCDLYVLEL 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+    + +K  A +  N+  DH+D +   + Y  AK+R++         A++  +
Sbjct: 161 SSFQLET--TNSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIY----YNAETAVVNLE 214

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +    +                          +  K++V +  +             
Sbjct: 215 DKLTFGEGENQAKKVVSFAENQADYWLKTENGKQYLMAKEEVILPCDEAILVGRHNY--- 271

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  L  A+ I+   +   L +   +  RF+     +    I    A    S 
Sbjct: 272 ---MNILAATALAQAVDINLEAIRIALRQFKGLDHRFQLAYQTNGVRWINDSKATNVGST 328

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA----IVTDDNPRSEDP 425
              L  +     G + ++ G  G          G    +LAD+     I T    R    
Sbjct: 329 VAALAGL--YVEGTLHLLLGGDGK---------GADFSELADLINQPHISTYCFGRD--- 374

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++              +AI      L   D++++
Sbjct: 375 ---GKQLAALSSQSHLFETMQQAISFLRPRLKSGDMVLL 410


>gi|312875831|ref|ZP_07735821.1| FolC bifunctional protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797312|gb|EFR13651.1| FolC bifunctional protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 445

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRP 400
             GRFE V        I +D AH ++ ++++ K+       + + +V G   D++  K  
Sbjct: 294 WHGRFEIVSKQPL---IILDSAHNADGMDILRKSCNEYLREKDVWIVLGILKDKEYEK-- 348

Query: 401 IMGKIALDLADIAIVT--DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M  I  ++ +  I T    + R+   E+   EI           +   AI   +  LNK
Sbjct: 349 -MLYIVSEITNNIIFTLVPHSKRAFSAEE-AREIAKRF-NLEFVEDYKNAIEKGLSKLNK 405

Query: 459 QDVLVVAG 466
              L+++G
Sbjct: 406 NSALLISG 413


>gi|301328816|ref|ZP_07221861.1| protein FolC [Escherichia coli MS 78-1]
 gi|300844816|gb|EFK72576.1| protein FolC [Escherichia coli MS 78-1]
          Length = 281

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 146 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 196

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 197 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 249

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 250 DAKAEDTVLVCG 261


>gi|295113830|emb|CBL32467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus sp.
           7L76]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++  +      TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFQPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD       +       +  +              A     ++  + E         +
Sbjct: 218 -ADDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|206579371|ref|YP_002240813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae 342]
 gi|288937467|ref|YP_003441526.1| UDP-N-acetylmuramate [Klebsiella variicola At-22]
 gi|290512207|ref|ZP_06551574.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. 1_1_55]
 gi|206568429|gb|ACI10205.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae 342]
 gi|288892176|gb|ADC60494.1| UDP-N-acetylmuramate [Klebsiella variicola At-22]
 gi|289775202|gb|EFD83203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. 1_1_55]
          Length = 457

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 97/359 (27%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       Q   +
Sbjct: 203 QFHHLVRIVPGKGKIILPENDINLKQVMAMGCWSEQELVGEQGHWQAKKLNADASQWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L+ +R    G  RI+ V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEP-----RSNTMKMGVCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +       +        ++  +  D ++V
Sbjct: 377 SLGRADEVFLLQPQH---IPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV 432


>gi|239827909|ref|YP_002950533.1| FolC bifunctional protein [Geobacillus sp. WCH70]
 gi|239808202|gb|ACS25267.1| FolC bifunctional protein [Geobacillus sp. WCH70]
          Length = 431

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 93/307 (30%), Gaps = 12/307 (3%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQ 221
           T    I       +        V +EA   G      + I  +    TN+  DH+++  +
Sbjct: 121 TEFEVITAMMLYYFGKKNIQDVVLIEAGLGGRFDS-TNVIYPLLSIITNISYDHMNFLGE 179

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T +     K  + +  +P  +            E  K       R+    +       + 
Sbjct: 180 TLEKIAFEKAGIIKSGVPVITAVNQPEAWTVISEKAKSLKAKTYRLEEDFFIVHHESTED 239

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                 +   +   + K   F         +              +     +    +   
Sbjct: 240 GEHFSMETIFSQYPDLKIMMFGEHQVQNAALAVMAAEYLRMCYSFLIEKEHIYEGIEKAK 299

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRP 400
             GRFE V   S    I +D AH +  +  ++  +R+    + + V F   GD+      
Sbjct: 300 WIGRFERV---SNKPLIIIDGAHNAAGIHSLVNTVRSHYPNKDVHVLFAALGDKPLD--- 353

Query: 401 IMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M     ++A     T  D PR+  PE++ A  +   P      +    ++   +     
Sbjct: 354 QMIPPLAEIAKTITFTSFDFPRAASPEQLAA--LCNHPHKATTDDWKGWVKEKKKQKRSD 411

Query: 460 DVLVVAG 466
           D+ ++ G
Sbjct: 412 DLFLITG 418


>gi|167626976|ref|YP_001677476.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|189028990|sp|B0TW67|MURC_FRAP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167596977|gb|ABZ86975.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 452

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 91/274 (33%), Gaps = 8/274 (2%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  ++            F      E+  +   D   +  + K   
Sbjct: 169 LNPNVAIVTNIDLDHMSTYKNSYDNLLENFANFLMKESIENIYLCVDDHGCNDLLDKYRS 228

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                ++S G+       +       N    T+  +   +DF   LPG++ V NA     
Sbjct: 229 RVVGNIVSYGFAINSDARIYNYRVSDNLTTFTVEYKSGKYDFELQLPGKYNVQNATACVV 288

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLEMILKNIRT 378
            C+ +G     +   L  +  V  RF+            +  DY H    +   L  +R 
Sbjct: 289 ACLDLGFSYKDIYNALATVKGVARRFDVYDKQISSHKIPVIDDYGHHPVEVTSSLGAVRD 348

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIM--GKIALDLADIAIVTDDNPRSEDPEKIRA--EIIH 434
               + I +      R    R ++     AL LAD  I+       E   +     ++I 
Sbjct: 349 RYPNKKI-IHVFQPHRYTRNRDLLIDWPKALSLADQLIILPTYSAGEQIIQGAESQDLIR 407

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            IP  +   +    +    ++++   V+++ G G
Sbjct: 408 NIPKVLLADSFDHVLYFLEKLVDDNTVVLIQGAG 441


>gi|332088446|gb|EGI93564.1| bifunctional protein folC [Shigella boydii 5216-82]
          Length = 422

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAGQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|123441030|ref|YP_001005019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087991|emb|CAL10779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 444

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 134/400 (33%), Gaps = 52/400 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +              ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSEAAEAGVEIVGDIE--------LFCRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +             + L K  + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVPALNLLKQ-------LTLQKHENQLV-------VL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH D +      + A       +       ++ 
Sbjct: 164 ELSSFQLET--TSSLHASAATILNVTEDHTDRYPFGLQQYRAAK---LRVYENAKVCVVN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V    +      + VG         ++          +  E         L 
Sbjct: 219 ADDALTMPVRGADNRCISFGVDVGDYHLNKQQGEIWL-------RVRGEKVLNTREMKLT 271

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+GI  +  L+ L     +P RF+ V  ++    I    A    
Sbjct: 272 GRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLVFEHNGVRWINDSKATNVG 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +       E 
Sbjct: 332 STEAALDGLPL--DGTLHLLLGGDGKSADFSGLTRFLQG-------DHIKIYCFGRDGEQ 382

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 383 LAELRPEVSQ------LTETMEQAMVLLAKSLAPGDMVLL 416


>gi|194432829|ref|ZP_03065113.1| tetrahydrofolate synthase/dihydrofolate synthase [Shigella
           dysenteriae 1012]
 gi|194418817|gb|EDX34902.1| tetrahydrofolate synthase/dihydrofolate synthase [Shigella
           dysenteriae 1012]
 gi|320178710|gb|EFW53673.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella boydii ATCC 9905]
 gi|332090176|gb|EGI95275.1| bifunctional protein folC [Shigella dysenteriae 155-74]
          Length = 422

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAGQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|256825479|ref|YP_003149439.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kytococcus
           sedentarius DSM 20547]
 gi|256688872|gb|ACV06674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kytococcus
           sedentarius DSM 20547]
          Length = 528

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 119/387 (30%), Gaps = 53/387 (13%)

Query: 65  AQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            QGAE +V S     S     A  R+  P+         + L       +     L VTG
Sbjct: 110 EQGAEVVVTSPGLRPSTPLLEAARRAGIPVW------SEVELAWRMRPSQGAAPWLCVTG 163

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GK++V   +  + +  G  +   G   T                      + L     
Sbjct: 164 TNGKTTVVRMLTAMLEAGGERAVAAGNVGTPIME------------------AILDPTRF 205

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
             ++VE SS  L  H    +   A    N+  DH+D+H + +AY              + 
Sbjct: 206 GAIAVELSSFQL--HHTWTVSPEASCVLNIAADHVDWHGSIEAY---AGDKGRIHHNAQV 260

Query: 243 PAIIYADDAYSKEVMKR-AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---- 297
            A+    D  ++ ++++     GCR +  G     +    +       +  +        
Sbjct: 261 AAVYNVQDEVTRTLVEQADVVEGCRAVGFGLGTPGLSELGLVEDVLADRAFVDDRQNSAA 320

Query: 298 -----KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                +D       P    V NAL AA L  A G+  A +   L      P R E V   
Sbjct: 321 ELGTLEDLTRDGVAPAPHLVANALAAAALARAHGVQPAAIRAGLRAFRADPHRMETVLVA 380

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                +    A   ++    L           IV    G  +      ++  +A  L  +
Sbjct: 381 DGITWVDDSKATNPHAAAAALTAS------DRIVWVAGGDLKGAEVDELVAAVADRLQAV 434

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGF 439
            ++       +D   I   +    P  
Sbjct: 435 VLL------GKDARVIAEAVARHAPEV 455


>gi|238855721|ref|ZP_04646017.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3]
 gi|260665507|ref|ZP_05866354.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934756|ref|ZP_06339996.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|238831667|gb|EEQ24008.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus jensenii 269-3]
 gi|260560775|gb|EEX26752.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301167|gb|EFA93471.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
          Length = 435

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 82/281 (29%), Gaps = 22/281 (7%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY +      +A     ++          + DD      +++ 
Sbjct: 164 AYHPDYQIMTNIDFDHPDYFKDINDTQSAFQSAADQTKKALFV---WGDDPR----LQKI 216

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                +               V    +    ++   GK+  +F   L G+  + N+L   
Sbjct: 217 ETKIPKYTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKTHLFGDHNIMNSLAVI 276

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+ +   +    + + L        RF           +  DYAH    +   ++  +  
Sbjct: 277 GVALTEEVPMEDIQKGLLTYGGAKRRFSEKDFG--DITVIDDYAHHPTEMRATIQAAKQK 334

Query: 380 TSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHG 435
              + +VV        + K       +I     D A +T       E    I   ++   
Sbjct: 335 FPNKKLVVVFQPHTYSRTKEFASEFIEIL-RGVDKAYITPIFGSAREKSGDISSEDLTSQ 393

Query: 436 IPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETVHI 474
           IPG          I    ++   +  V+V  G G  E    
Sbjct: 394 IPGSEVID-----IANIADLTKNRNSVVVFMGAGDIEKYED 429


>gi|297521613|ref|ZP_06939999.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli OP50]
          Length = 294

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 159 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 209

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 210 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 262

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 263 DAKAEDTVLVCG 274


>gi|256545401|ref|ZP_05472764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398962|gb|EEU12576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 436

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 20/290 (6%)

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +   +       E SS  L  H     K       N+  DHID+H + + Y         
Sbjct: 137 WQMYKNDEIFVEEISSFQL--HNTKFFKPHIAGILNITPDHIDWHGSFENYI-EDKLKIA 193

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
               +    II  DD    +   +               + I+LK        ++    +
Sbjct: 194 INQNESDYLIINHDDEILMKNKNKFKAKIYEFSIKEEVQRGIYLKDDSLYLKDEKEIYLL 253

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +  D      + G+  + N   A       G+D   ++++ +    +  R EFV      
Sbjct: 254 KRDDL----KIVGDHNLLNVSCAILCLYLFGLDLDEIIKYTKTFKAIDHRLEFVKKIRNV 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
                  A   +S    + +       + +++   G D+     P+       +  + ++
Sbjct: 310 SFYNDSKATNVDSAIKAINSFD-----KNVILIAGGYDKKIDYTPLFKNTKKKIKTMILM 364

Query: 416 TDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     ++I   +       +    +  EA+  + E++   D +++
Sbjct: 365 GQ-------TKEILQNLCEKYKINYYLVNDMKEAVNKSFEIMKDFDTVLL 407


>gi|148657882|ref|YP_001278087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus sp.
           RS-1]
 gi|166224765|sp|A5UZT4|MURD_ROSS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148569992|gb|ABQ92137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus sp.
           RS-1]
          Length = 466

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 84/282 (29%), Gaps = 11/282 (3%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+     G+       T +  DH+D H T +AY  AK +++    P ++ A+ 
Sbjct: 164 LELSSFALEGLGEAGLSPKIACITTIAPDHLDRHGTMEAYILAKEQIWRHQRPGDAVALN 223

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
                     +           +        H  +       + V     G         
Sbjct: 224 ADSPIIRAMAVVEQRPDDVVWFASAAHPALAHAGRAAFWQGDELVWRDHRGGRHVICTRD 283

Query: 307 PGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
             + +  + L       A           +   ++    V  R E V          V Y
Sbjct: 284 DVQLRGTHNLGNIAAATAAACSFGVAPDHIRRAVQTFPGVEHRLELVRELDG-----VRY 338

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
            + + +           T    IV+   G D+      +  +IA  +   A+V  D   +
Sbjct: 339 VNDTAATAPEAAIAALRTFDDPIVLIAGGADKQLPFDDLAREIAGRV--KAVVLVDGTAT 396

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++    +   +       +   A+  A  +    D++++
Sbjct: 397 PKLQRALRLVDPSVDVCGPFDDFERAVIAARHIAAPGDIVLL 438


>gi|71281117|ref|YP_268602.1| mur ligase family protein [Colwellia psychrerythraea 34H]
 gi|71146857|gb|AAZ27330.1| mur ligase family protein [Colwellia psychrerythraea 34H]
          Length = 584

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 74/459 (16%), Positives = 145/459 (31%), Gaps = 59/459 (12%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDN--------------TRKFLSLF 105
           I  AI++  + I       L +      S   + +VD+                  L   
Sbjct: 111 ISAAISRLNQVIAEEVNPELLELIKQSTSKNIVYLVDDDEFSLGYGTTAQSWPISALPEV 170

Query: 106 ASRLYGKHPENILAV-TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
           ++  + ++    LA  TGT+GKS+    + QI +++G      G TST      DN +  
Sbjct: 171 STINWSQYKSIPLAYVTGTNGKSTSVRIMSQIIKQAGKCC---GVTSTDFIRVGDNIIDH 227

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   A   L         +E +  G+ +  L    + A   TN+  DH+  +    
Sbjct: 228 GDYSGPGGARMLLRHPDTETAILEVARGGILRRGLPIDNVDAALITNIAEDHLGQYGINT 287

Query: 225 AYFNAKMRL--------------FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
               A+ +                E     +   ++ ADD     +              
Sbjct: 288 VSALAQAKAVVAKGLLPNLEDKGQEHNRQDKGRLVLNADDENLVVLAPEIPVTKSWFSLH 347

Query: 271 GYQGK-----------FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
                               ++        + ++ +   D            + NAL A 
Sbjct: 348 EDNATLQQHKQKGGAVCFVREQHLVYSVGNEESVIIAVNDIPMTLNGAALHNIQNALGAI 407

Query: 320 GLCIAIGIDSALVLEHLEKL----HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
            L   + +++  +   L          PGR        +   + +D+AH  +S+E +   
Sbjct: 408 ALAKCLNVENEAIKIALSNFASNVEDNPGRG--NHFTVKSAEVIMDFAHNVHSMEAMAVT 465

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-ADIAIVTDDNPR------SEDPEKI 428
              + + R  ++    GDR   +   M K AL +  D  +  +  P        E P+ I
Sbjct: 466 TANMKAQRKFLMLSHAGDRTDNEIINMTKTALKMKPDFIVAAELVPYLRGRTLGEIPQLI 525

Query: 429 RAEIIH-GIPGF-IEKGN-RIEAIRTAIEMLNKQDVLVV 464
               +  G+    I   +   +     +E L ++D+ ++
Sbjct: 526 VDTALAYGMKRSDIYIADSPFKGANYIVEQLREKDLALL 564


>gi|119385135|ref|YP_916191.1| Mur ligase middle domain-containing protein [Paracoccus denitrificans
            PD1222]
 gi|119374902|gb|ABL70495.1| Mur ligase, middle domain protein [Paracoccus denitrificans PD1222]
          Length = 1020

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 123/422 (29%), Gaps = 28/422 (6%)

Query: 51   GNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
            G   D H  +P A+     A +V+           +    P+L V +    L        
Sbjct: 600  GKHWDIHDQLP-ALQGRIAAAMVARPVE------GLAPGFPLLQVPDPLHALIQLGVAGR 652

Query: 111  GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
             +   +++AVTG++GK+S +  +     +                        TP    L
Sbjct: 653  NRLKGHVVAVTGSAGKTSQSLMLMAAMAKDRKVIGNSALNYNSRVGILHLLANTPPSTDL 712

Query: 171  AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                + +            + +      +  ++   G  TN+   H+            +
Sbjct: 713  VVVEAAV-----------TAINAPKFQNIRLMRPDIGLVTNIAPSHMQRSGQGLETVARR 761

Query: 231  MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                 E +      ++  +  +    + RA      V++ G                 + 
Sbjct: 762  KANLVEGIAPGGTLLLNREIDFYDVFLDRAKQRDLCVVTFGAGEDADLRLVGYDQATGRV 821

Query: 291  VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                  G   D+    PG     N+L   G+ + +G D A  LE LE+     GR     
Sbjct: 822  KARLPGGGLLDYRISAPGRHMAMNSLACIGVRLLLGGDLAPFLEGLEEFQPAEGRGAVSR 881

Query: 351  TNSRGGR---IYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCG----GDRDQGKRPIM 402
                G     +   Y     S++  L     +   GR I++ G       D  +  R + 
Sbjct: 882  VEFEGCPLTVVDDSYNANPVSMQAALSTFAGMKVAGRRILILGDMAELGKDASRYHRGLA 941

Query: 403  GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +I     D  ++    P  ++     ++   G             +      L   D +
Sbjct: 942  AQILKIRPDEVLLC--GPLMQELWDELSKSGAGRVDGAHYPRVEVLLSNLAGHLRSGDTV 999

Query: 463  VV 464
            ++
Sbjct: 1000 LL 1001


>gi|297170501|gb|ADI21531.1| UDP-N-acetylmuramate-alanine ligase [uncultured verrucomicrobium
           HF0070_15G23]
          Length = 416

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 116/379 (30%), Gaps = 55/379 (14%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +  L +TGT GK++ AS +  I   +G  +          +F+Q  R T    I    
Sbjct: 64  QGKRSLVITGTHGKTTTASLLAWILDCNGF-NPSYLIGGIPENFSQGARFTDSEWI---- 118

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               +          +  S  L                NL  DH D     Q       +
Sbjct: 119 ---VMEGDEYDTAFFDKRSKFLHY------LPEVVLINNLEFDHSDIFNDLQQIQ-TSFK 168

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               L+P     ++  DD     ++   H                    V  + +     
Sbjct: 169 RLINLVPSNGLLLVNGDDKNITPLIDVDHCPIESFTLSHLTDLGYRQTGVRFVLDG---- 224

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                  F F  PL GE  V NAL    +    G+ +  +    +    +  R E     
Sbjct: 225 -------FCFELPLYGELNVRNALGVIYIARYCGLSNKQIQGGFDSFEGIKRRMEV-KAE 276

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
            RG  +  D+AH   ++   LK  R      RI  VF    +    +R I      +LAD
Sbjct: 277 IRGITVVDDFAHHPTAIRETLKAARVRFPGKRIWAVFEPRSN--TTRRNIFQ---DELAD 331

Query: 412 -----IAIVTDDNPR----SE----DPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEML 456
                  I+  +  R    SE    D EK+   +    G+       + I  +   +   
Sbjct: 332 SLKEAEIIIVSEVARAGNISEPDLLDTEKLVHALNDFGGLASCFRSVDNI--LEHILGYA 389

Query: 457 NKQDVLVVAGKG-----HE 470
            + DV+ +   G     HE
Sbjct: 390 EEGDVIFILSNGGFENLHE 408


>gi|308050319|ref|YP_003913885.1| FolC bifunctional protein [Ferrimonas balearica DSM 9799]
 gi|307632509|gb|ADN76811.1| FolC bifunctional protein [Ferrimonas balearica DSM 9799]
          Length = 416

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 106/372 (28%), Gaps = 35/372 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++ V GT+GK +  + +++I   +G S              +             +
Sbjct: 46  PDSTVITVGGTNGKGTTCALLERILMAAGYSVGVFSSPHIERYTERVRINGE----ERPE 101

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS----------------FTNLGRDH 216
           +    + Q + +   + S    +   L  + L A                   TNL    
Sbjct: 102 SEHVEAFQAIANAQADTSLTFFEYSALGALHLFARHRPDVVLLEVGLGGRLDATNLIDAD 161

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +    +        +    + + +E   I  A       +    +         G  G  
Sbjct: 162 LSLITSIDLDHQEYLGDTRDSVAREKAGIFRAGRPA---ISGEPNPPATLASEAGRIGAS 218

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-IGIDSALVLEH 335
           +  +                G+ +             NA+ A     A         +E 
Sbjct: 219 LRQRGEQFDGRFDAEQWQFRGQQWQLDGLPLPHIPRDNAVTALAALEALWPNLPRQAIEL 278

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
                 V GR E +        + VD AH  ++   + + +   ++ R+  V     D+D
Sbjct: 279 GLANTRVEGRLETLSAQPW---LVVDVAHNPHAARHLAQWLSQQSASRVHAVCAMLKDKD 335

Query: 396 QGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +  +A    D   +     PR  D E++   +    P      +   A+  A+ 
Sbjct: 336 ID--ATLAALADQ-VDHWYLAPLSGPRGADAERLAQPL----PQAEIHASVANALDAAVN 388

Query: 455 MLNKQDVLVVAG 466
             +   +++V G
Sbjct: 389 AADDSALVIVFG 400


>gi|293415608|ref|ZP_06658251.1| folC bifunctional folylpolyglutamate synthase/dihydrofolate
           synthase [Escherichia coli B185]
 gi|291433256|gb|EFF06235.1| folC bifunctional folylpolyglutamate synthase/dihydrofolate
           synthase [Escherichia coli B185]
          Length = 422

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR    E++   + +G    I      +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDIV----AQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|262371719|ref|ZP_06064998.1| folylpolyglutamate synthase [Acinetobacter junii SH205]
 gi|262311744|gb|EEY92829.1| folylpolyglutamate synthase [Acinetobacter junii SH205]
          Length = 428

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 109/387 (28%), Gaps = 51/387 (13%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-------------- 157
           K    +  V GT+GK S  + +  I    G +                            
Sbjct: 45  KPNAKVFTVAGTNGKGSTTTTLAAILNAQGYNVGLYQSPHIYRFNERVRLAGQEVNDQSL 104

Query: 158 -------------QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL 204
                            L+      LA  L     +      VE    G     ++ I  
Sbjct: 105 IDAFVLVDQARRECGLSLSFFEATTLAAFL-IFKQKQCDVWVVEVG-LGGRLDVVNVIDP 162

Query: 205 IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAG 264
                TN+G DH+D+                 ++    P I   +    + +  +A  + 
Sbjct: 163 DIAVITNIGLDHVDWLGDTIEK---IAFEKAGIIRPNIPVIFGGNQPLPQAIQDKALESN 219

Query: 265 CRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             + ++     +       +       T            P         +   A + ++
Sbjct: 220 ANLYALNRDYFYQLNDDGLSWCFASSGT--------TLKLPTGHLAIENISTAVAAILVS 271

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
               S   +    +   + GRFE      +   +  D  H  + +E +L  +R       
Sbjct: 272 GLPISQSTIAQGIQHASLQGRFEIR--QIQNKTVIFDAGHNPHGVEFLLNQLRKFLKYNK 329

Query: 385 -----IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
                + VF    D+D      + K  +   +  I T D PR+  P +   E + G    
Sbjct: 330 QYTEVVAVFSMLADKDIASVTDLLKTTVK--NWFIATLDVPRA-APMQQLNEALAG-QQV 385

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E  +  +A    ++  N   +++V G
Sbjct: 386 HEFSSIQQAFEIVLKQCNNNQLILVCG 412


>gi|259047014|ref|ZP_05737415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
 gi|259036333|gb|EEW37588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
          Length = 452

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 122/414 (29%), Gaps = 54/414 (13%)

Query: 64  IAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-----------LFASRLYGK 112
           +A+G + +       L D         P +   N     +             A R+   
Sbjct: 53  VAEGVKVVSGGHPLELLDGDVDFVVKNPGIPYSNPLVAKAVDKGLPVYTEIEIAQRVME- 111

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL--SSFQIGPTSTISSFAQDNRLTTPSPIYL 170
               +L +TG++GK++  +    +   S     +F  G      S   ++   T      
Sbjct: 112 --GTVLGITGSNGKTTTTTLTNLMLHESFPERRTFACGNIGVPLSQLAEDSKET------ 163

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                            E SS  L    ++  +       N+   H+DYH +++ Y  AK
Sbjct: 164 ------------DIYVTELSSFQL--MGIEAFRPKVACIVNIFSAHLDYHGSREEYVKAK 209

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +++ +    ++            + +                     +  +         
Sbjct: 210 LQITKNQTEEDFLVYNADFPELYEFIKGHTKATLVPFSRKSVLEHGAYTDETSIY----- 264

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              + E         +PG   V N L A  +C   G  +  + + +   H V  R ++V 
Sbjct: 265 --FNGEAVMPIEAIQVPGVQNVENVLAAVAICKLQGATNEGIEKAVRSFHGVKHRTQYVK 322

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           T           A     +      +R+ T  + +V+   G DR  G   +   +     
Sbjct: 323 TIEGRKFYNDSKATN---IIATQTALRSFT-NQSVVLIAGGLDRGNGFEELESSLGNVRE 378

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +          E  EK++A                EA+  A     + +++++
Sbjct: 379 MVVY-------GETKEKLKATAEKLSIPVTVVETLEEAVPKAYAASREGEIVLL 425


>gi|123441033|ref|YP_001005022.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166224749|sp|A1JJJ4|MURC_YERE8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122087994|emb|CAL10782.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 491

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 227 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLK-RLDKPLMTVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 286 LNAPGRHNALNAAAAVAVATEEGIEDNDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGS 345

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         ++LN  D+++V G
Sbjct: 405 LMLDVYAAGEPPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|325954316|ref|YP_004237976.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
 gi|323436934|gb|ADX67398.1| UDP-N-acetylmuramate--L-alanine ligase [Weeksella virosa DSM 16922]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 79/204 (38%), Gaps = 21/204 (10%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
              K V          +    K+   +   LPG   + NAL A  +   +GID   ++E 
Sbjct: 238 YVAKNVRIEDGHYVFDVQTPTKEIHNVGILLPGRHNMENALAALAVADYMGIDEKKIIEA 297

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L +   V  RF              DYAH  N L+ +++++R +   + +++        
Sbjct: 298 LAEFKGVKRRFNR--FEYTDKIYIDDYAHHPNELKAVIESVRELYPTKKLLLVFQPHLYT 355

Query: 396 QGKRPIMGKIALDLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIE 447
           +  R  + + A  L+  D  ++ D  P  E P      E + ++I               
Sbjct: 356 RT-RDFVNEFAESLSAVDELVLLDIYPARELPIEGVTSEWLLSKITLDQKKVCS------ 408

Query: 448 AIRTAIEMLNKQ--DVLVVAGKGH 469
            +  A+++L  +  D+L+ AG G+
Sbjct: 409 -LEGAMDLLKTKKFDILLTAGAGN 431


>gi|238761557|ref|ZP_04622532.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
 gi|238700071|gb|EEP92813.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
          Length = 495

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAVAGT 131

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 132 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 189 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 230

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 231 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLK-RLDKPLMTVT 289

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRG 355
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 290 LNAPGRHNALNAAAAVAVATEEGIEDDDILRALIGFQGTGRRFDFLGNFPLAPVNGKEGS 349

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 350 AMLVDDYGHHPTEVDATVKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQ-VDVL 408

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         ++LN  D+++V G
Sbjct: 409 LMLDVYAAGESPIPGADSRSLCRTIRNRGKLDPILVSDSDTVPEVLAQVLNGDDLILVQG 468

Query: 467 KGH 469
            G+
Sbjct: 469 AGN 471


>gi|261252355|ref|ZP_05944928.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           orientalis CIP 102891]
 gi|260935746|gb|EEX91735.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           orientalis CIP 102891]
          Length = 421

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 103/384 (26%), Gaps = 26/384 (6%)

Query: 97  NTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF 156
           +  + ++  A+    K    ++ V GT+GK S  + ++ I   +G S         I   
Sbjct: 33  DRVQAVAKSANLT--KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYN 90

Query: 157 AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDH 216
            +           LA      +   +     E S    +   L  ++L      ++    
Sbjct: 91  ERVRINGQ----DLADEKHAEAFDYIEKQRGEISLSFFEYGTLAALRLFQTENVDVVLLE 146

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           +       A       +               DD       K       R    G     
Sbjct: 147 VGLGGRLDATNVVDHDVSVITSLAIDHVDWLGDDINVIGFEKAGIYRSDRPAICGQPKAP 206

Query: 277 IHLKKV------------CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
             +                  + +     +       +         +     A  L   
Sbjct: 207 ATVAAHADDIGAELYQVGIQYNYELVDDSTWRWVHGCYELDSLPVPGLPLQNAATALMAL 266

Query: 325 IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGR 383
              +  +   ++ K          +   S    I +D AH  +S +  + +  +   S  
Sbjct: 267 GTSNLDISDVNIVKGLQNAKLPGRMQIISSEPTILLDVAHNPHSAQYLVERVAKQYPSKA 326

Query: 384 IIVVFGCGGDRDQGKRPI-MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK 442
           I  V     D+D       +  +A +    ++     PR+   E++   +      F   
Sbjct: 327 IHTVVAMLHDKDIQSTLEALAPVASNWYPASL---SGPRAAKAEELCQFLPQATQQFSTP 383

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
               EA   A+     +DV++V G
Sbjct: 384 V---EAFEAAMTNAKAEDVILVVG 404


>gi|260583266|ref|ZP_05851042.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae NT127]
 gi|260093673|gb|EEW77585.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae NT127]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 75/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHAGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDDIAPALGRADEVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|227497493|ref|ZP_03927722.1| possible tetrahydrofolate synthase [Actinomyces urogenitalis DSM
           15434]
 gi|226833067|gb|EEH65450.1| possible tetrahydrofolate synthase [Actinomyces urogenitalis DSM
           15434]
          Length = 643

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 18/135 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E + ++     + VD  H  + +  ++  ++       ++ V G   D+D      
Sbjct: 501 PGRLEVLRSSPT---VIVDAGHNPHGVSALVPAVQEAFGFQHLVAVVGAMADKDVEG--- 554

Query: 402 MGKIALDLADIAIVT-DDNPRS---EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           +  +     D  +V   D+PR+   ED   +  E+  G    I   +    +  A+ +  
Sbjct: 555 ILSVLEPATDAVVVVPMDSPRAMEVEDLAAVAREVY-GEDRVIVAEDLGSGVEQAVALSE 613

Query: 458 KQDV------LVVAG 466
             D       +++ G
Sbjct: 614 GFDAPMTASGVLIVG 628


>gi|212715567|ref|ZP_03323695.1| hypothetical protein BIFCAT_00466 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660934|gb|EEB21509.1| hypothetical protein BIFCAT_00466 [Bifidobacterium catenulatum DSM
           16992]
          Length = 528

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/406 (12%), Positives = 113/406 (27%), Gaps = 56/406 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + +    ++ +TGT+GK S A   + IC+  G+ +             +           
Sbjct: 34  HPEQSFRVIHITGTNGKGSTARMTEAICRAYGMRTGLYTSPHLEHVNERIAIDGQQLSDD 93

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG----------RDHIDY 219
                       V  V ++       +     +      +                   +
Sbjct: 94  DFVDTWDQIKDLVAMVDMKMGELDKPKMSFFEVLTAMAIWKFADAPVDVAIVEVGMGGRW 153

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             T     +A +    ++             A  K  + +             +     +
Sbjct: 154 DATNVLDADAAIIGPIDMDHMAWLGNTVEQIASEKVGIIKPGCTAVIGRQPHEEAVMPII 213

Query: 280 KKVCAIHN--------------------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           ++  A ++                     Q VT+      +  +          +  +AA
Sbjct: 214 EEAAAENHANLVRDGIEAEVVTRIPAVGGQVVTLRTPNGTYAEVPVAKFGEHQAHNALAA 273

Query: 320 GLCIAIGIDSA-----LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
                + I         ++        +PGR E + T+     I +D  H  N+ E +  
Sbjct: 274 LCAAEVVIPVNGALDGDLVAESLSTVRIPGRIEQIRTSPT---IILDGGHNVNAAESLRA 330

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-----EDPEKI 428
            I       +++ V    GD+          +   L    IVT+++ R      ED + +
Sbjct: 331 AIEENYDFQQLVGVIAMMGDKQVE---EYLGVLEPLLSHVIVTENSWRDRVMPAEDLKTV 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
              +  G           +AI+ A+ M++  D         +++ G
Sbjct: 388 AERVF-GAERVTCVPELPDAIQEAVNMVDADDELGVGYGHGVLICG 432


>gi|229916435|ref|YP_002885081.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sp. AT1b]
 gi|259509772|sp|C4L4P1|MURC_EXISA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229467864|gb|ACQ69636.1| UDP-N-acetylmuramate/alanine ligase [Exiguobacterium sp. AT1b]
          Length = 435

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 116/416 (27%), Gaps = 52/416 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IVV       D    +R+    L +    +FL   A+          +A+TG+ GK+S  
Sbjct: 63  IVVQGNAFSDDHPEIVRARELGLTIYKYYEFLGELANHYTS------VAITGSHGKTSTT 116

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  + +    +SF IG          D++              +       +  +   
Sbjct: 117 GLLAHVMRGIEPTSFLIG--DGTGEGVADSKNFVFEACE---YKRHFLYYRPDYAIM--- 168

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
                              TN+  DH DY        +A   + +++             
Sbjct: 169 -------------------TNIDFDHSDYFSGLDDVIDAFQEMAKQVKKGIIACG----- 204

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              + + +   N        G    F   +     +         +     F  P  G+ 
Sbjct: 205 -DDENLQQIQANVPLVYYGFGAHNDFRAEQVTSTENGTTFDVFLRDDFYGTFRIPGYGDH 263

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
            V NAL     C    +   LV E LE  + V  RF     N     +  DYAH    + 
Sbjct: 264 SVLNALAVIATCDYENLPKELVKERLETFNGVKRRFSESTLN--DQVLVDDYAHHPREIS 321

Query: 371 MILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPE 426
             ++  R     R +V         R +           + AD   + D   + R ++  
Sbjct: 322 ATVEAARKKYGNREVVAIFQPHTYTRLKSFMDDFATALAE-ADTVYLCDIFGSAREQEGT 380

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ETVH-IVTNGEK 480
               ++   I G          +           VL+  G G  +T         K
Sbjct: 381 VTIEDLQSRIEGAHILKRGGTGVLRNHADA----VLLFMGAGDIQTYQREYEEVVK 432


>gi|145641451|ref|ZP_01797029.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae R3021]
 gi|145273742|gb|EDK13610.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae 22.4-21]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 75/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDDIAPALGRADEVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|332873288|ref|ZP_08441243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6014059]
 gi|332738494|gb|EGJ69366.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6014059]
          Length = 445

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 89/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 152 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 210

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 211 ETHIDEVLEMGCWTPVIRTSLEANEKATLSAELISIDGSHFKVLENGNVVGEVKWSMTGQ 270

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +GT + G  +Y D+AH   ++
Sbjct: 271 HSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTIN-GIEVYDDFAHHPTAI 329

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 330 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 382

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 383 LDW-DLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVI 423


>gi|227510367|ref|ZP_03940416.1| folylpolyglutamate synthase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190019|gb|EEI70086.1| folylpolyglutamate synthase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 445

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 15/301 (4%)

Query: 177 LSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +      HV       GL  +    + +     S                    A  +  
Sbjct: 128 MLYFADLHVDYVVLECGLGGELDATNAVFNTMYSIFTKISLDHVGILGNNITEIATTKSK 187

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  + +  +      + + K AH+     L+       + L+   +       + +
Sbjct: 188 IIRQNNVTISAQHQPGEAFRVLEKEAHSKNATFLTSNQTVISMILQTPKSTRVHYVNSQN 247

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV------PGRFEF 348
            E +   F F L   +Q+ N        I       LV    + L         PGRFE 
Sbjct: 248 DEHQSGTFNFGLVATYQLENLATVITWLIDFLNRKKLVYNLNQLLEETLSNIVVPGRFEK 307

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK-IAL 407
               S+   I +D  H  + ++  +K + T+      ++      +D+     + + I+L
Sbjct: 308 ---ISQQPVIILDGGHNPDGIQAFVKTVNTLYPDSEKLIINGF-LKDKSYESSVKELISL 363

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             A   I   DN + E P +  +++   +    +    +  +AI+ A+       ++ V 
Sbjct: 364 KNASFIITEPDNKQRELPPQQLSDVYVKLTKQTYQSFDSATDAIQYAVSHATANTIIFVI 423

Query: 466 G 466
           G
Sbjct: 424 G 424


>gi|194334384|ref|YP_002016244.1| UDP-N-acetylmuramate [Prosthecochloris aestuarii DSM 271]
 gi|194312202|gb|ACF46597.1| UDP-N-acetylmuramate [Prosthecochloris aestuarii DSM 271]
          Length = 481

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 3/205 (1%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +    +       N+  DH D   + +    +  R F  L+P E   +    
Sbjct: 176 SAFFDKRSKFMHYRPDIAIINNIEFDHADIFNSIEDIKRS-FRHFVNLVPSEGLLLCNGH 234

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DA + ++  +A     R              +        +  +  +    +   PL G 
Sbjct: 235 DAVALDIASKAFCRVERFGLDKSCDWSARNIEANGERTAFE-LLHNQIPVGNLEIPLFGT 293

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + N L A G      I   ++ E L        R E +G       +  D+AH   ++
Sbjct: 294 HNILNTLAAIGSASQADIQLPVIAEALRHFKGPKRRMEVIGDFPGNITLIDDFAHHPTAI 353

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGD 393
           +  L  +R    S RII  F    +
Sbjct: 354 KATLDALRQRFPSRRIIACFEPRSN 378


>gi|288919054|ref|ZP_06413395.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
 gi|288349594|gb|EFC83830.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f]
          Length = 500

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 125/426 (29%), Gaps = 33/426 (7%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G + +VV+ A   +D                  + L+  A+          +AV G+ GK
Sbjct: 73  GVDLVVVAPAVPAEDPELAEARRRE-------LRILTRSAALAGLMQGHRGVAVAGSHGK 125

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY------LSSQ 180
           ++VA  +    Q  G         +      +    T      L    +          Q
Sbjct: 126 TTVAMMLTAALQACGEDP----TFAVGGDPGEAGSQTHAGSSDLMIVEADEDGGAFWQLQ 181

Query: 181 GVTHVSVEASSHGLDQHRLDG--IKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEEL 237
               V    +   LD +R         A     +  D +       +A ++       + 
Sbjct: 182 PHGAVLTGVADEHLDFYRTVPALRASFATFLHRVEPDGLLVACVDDEAAWSLAAEAARQA 241

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
                 A                          G       +    +        I+   
Sbjct: 242 ARAAEAAGTGLGVGTGVAGRSGGRGPWLTGYGFGPSADVRVVAAEVSTAGTSAEIIAHGV 301

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +       +PG   + +A  A    +A+G  +  +L  L     V  RFE +G ++ G R
Sbjct: 302 RLGRMSLRVPGRHHLLDAAAALATGLALGAPADGLLAGLASFAGVRRRFEPLG-SAAGVR 360

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK---IALDLADIAI 414
           +  DYA+  + +   +   R +  G  +VV          +  ++ +    AL  AD  +
Sbjct: 361 VVDDYANHPDRVTAAISTARALAGGGRVVVAFQPHL--YSRTALLAERLGEALRSADSVV 418

Query: 415 VTDDNPRSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           V D    ++ PE      ++      G      + +        ++     DV++  G G
Sbjct: 419 VMDVYGAAQAPEPGAGGARVALAARGGQAEVDYEPSWSAVPGRLMDRARPGDVVLTLGAG 478

Query: 469 HETVHI 474
            +   I
Sbjct: 479 -DVTQI 483


>gi|126642987|ref|YP_001085971.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter baumannii
           ATCC 17978]
          Length = 420

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 89/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 127 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 185

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 186 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQ 245

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +GT + G  +Y D+AH   ++
Sbjct: 246 HSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTIN-GIEVYDDFAHHPTAI 304

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 305 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 357

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 358 LDW-DLQPVIEAATNHAQVSRSLDEIIERIVNEAGEGDAVVI 398


>gi|154249041|ref|YP_001409866.1| FolC bifunctional protein [Fervidobacterium nodosum Rt17-B1]
 gi|154152977|gb|ABS60209.1| FolC bifunctional protein [Fervidobacterium nodosum Rt17-B1]
          Length = 435

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 54/394 (13%), Positives = 120/394 (30%), Gaps = 44/394 (11%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            L +             VTG++GK SV +F++ +    G +          +   + +  
Sbjct: 31  QLLSKMGNPHLGVKFFHVTGSNGKGSVTTFLENLTYYHGHNVTGFYSPHLSTILERFHWN 90

Query: 163 TTP--------------------------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
           T                                  + ++ +        + E  S  +  
Sbjct: 91  TNLINQEEFVDAAEYVKKYAEEMDKIGEEFSPSFFEYMTAMYFHLTKVKNAEFGSVEVGL 150

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                   +     ++       H       + ++   +  + K    ++  +     ++
Sbjct: 151 GGRFDSTNVITPVVSVITTISLEHTNVLGNTHEEIAFEKAGIIKSGVPVVIGEMPEEAKI 210

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +   + A  R   V   GK    + V    N        +    +    L G  Q+YN  
Sbjct: 211 V-IKNIAKERGSKVYEYGKDFSAEVVKYDFNNNIYNYYGDSTVKNIPVRLNGVHQLYNLA 269

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A      +       +++      +PGRFE          + +D +H   + E  + NI
Sbjct: 270 IALKAYETVEKLYEEKVQNAFSNAFIPGRFELF------DGLILDGSHNPQAAEAFVSNI 323

Query: 377 RTIT-SGRIIVVFGCGGDRDQGKRPIMG--KIALDLADIAIVT-DDNPRSEDPEKIRAEI 432
                + + + +FG   D+D+     MG  +      D  I+T   N R++  ++     
Sbjct: 324 ELYFSNKKRVALFGIVDDKDK-----MGVLEKIGPQFDTLIITRPPNKRAQKIDETYEIA 378

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  I + + I+ +    ++    DV  + G
Sbjct: 379 KKYCKNVILEPDPIKGVELLKKI--DGDVKFITG 410


>gi|52841980|ref|YP_095779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629091|gb|AAU27832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 129/364 (35%), Gaps = 27/364 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNR 161
              A  +  K+   ++AV GT GK++  S +  I  ++G+   F IG  S+  + +    
Sbjct: 95  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLG 152

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 I   +  S    +                      +       NL  DH D + 
Sbjct: 153 KGRWFVIEADEYDSAFFDKRPKF---------------MHYRPNIAVLNNLEFDHADIYP 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              A    +       +PK   AI   DD    EV+ R      R+ ++   G+   + +
Sbjct: 198 DLAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQF--SRIETLALSGEAEWVAE 254

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      Q   +   G   +  +PL G+F V N L A       G++  +  + LE+   
Sbjct: 255 LIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPEVAAKALEQFSP 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E   +N  G  +Y D+AH   ++   +  ++   SGR   +F          R  
Sbjct: 315 VKRRLEV-RSNRHGITVYDDFAHHPTAITKTIDALKR--SGRHQRIFAVMEFASYTMRT- 370

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQD 460
            G  A ++A      D     E  +    + +      +    N  E ++  I+ + + D
Sbjct: 371 -GVHAAEMAHALAPVDGAYVLEPQDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTVREGD 429

Query: 461 VLVV 464
            ++V
Sbjct: 430 AVLV 433


>gi|254232315|ref|ZP_04925642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase murF
          [Mycobacterium tuberculosis C]
 gi|124601374|gb|EAY60384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase murF
          [Mycobacterium tuberculosis C]
          Length = 514

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 5  DLIYKDFPELINQL--SIFPMQWRERKINE-VSSDSRHIQAGWIFVAIVG 51
          +L      E++      I P+    R++   V  DSR I  G +F+A+ G
Sbjct: 3  ELTVAQIAEIVGGAVADISPLDAAHRRVTGTVEFDSRAIGPGGLFLALPG 52



 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 85/281 (30%), Gaps = 28/281 (9%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+G  H+    +++     K  L  + +P     ++ ADD     + K       RV
Sbjct: 212 VVLNVGTAHLGEFGSREVIAQTKAEL-PQAVPHSGAVVLNADDPAVAAMAKLTAARVVRV 270

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                   +     +  I                         QV NAL AA + +  G 
Sbjct: 271 SRDNTGDVWAGPVSLERIGQAALYAACPRCPSRGPDSGSAATHQVTNALCAAAVALECGA 330

Query: 328 DSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS----- 381
               V   L     V   R +          I   Y    +S+   L+ +  I       
Sbjct: 331 SVEQVAAALTAAPPVSRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEAT 390

Query: 382 GRIIVVFGCG---GDRDQGKRPIMGKIALDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI 436
            R   V G     G+    +   +G++A+ L  + + +V     RS         ++ G 
Sbjct: 391 RRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTG--RSISAMH-HGAVLEGA 447

Query: 437 PGFIEKGNRIEAIRTAIEMLN-------------KQDVLVV 464
            G  E      A RTA+ + +               DV++V
Sbjct: 448 WGSGEATADHGADRTAVNVADGDAALALLRAELRPGDVVLV 488


>gi|297569886|ref|YP_003691230.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
 gi|296925801|gb|ADH86611.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
          Length = 502

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 15/231 (6%)

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFP 305
           + DD   +E++  A            +G    L K+         T+  +G+ F +F  P
Sbjct: 250 FVDDPVVRELVAVAPCPVLGYGEGAGEGADWRLDKLTVSPGGTGFTVLRQGELFGEFFSP 309

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +PG     NAL    +   +G+  A +   L     V  R E  G    G  +  D+AH 
Sbjct: 310 MPGRHNALNALAVIAVLDHLGVPPAEIAAGLAAFTGVRRRQEVRG-EVGGVTVIDDFAHH 368

Query: 366 SNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDDN-- 419
             ++   L  ++    GR  + VF    +    +R +  +        AD  ++ +    
Sbjct: 369 PTAVRETLAALKAAYPGRRLVAVFEPRTN--SSRRRVFQEAYVSVFAAADRVLIREPEGL 426

Query: 420 ---PRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              P  E    +++ A++              E I          DV+ + 
Sbjct: 427 EAIPVDERFSVQRLAADLTAAGLPARAFAEVQEIIDQLAVDSRPGDVVAIL 477


>gi|292492398|ref|YP_003527837.1| UDP-N-acetylmuramate [Nitrosococcus halophilus Nc4]
 gi|291580993|gb|ADE15450.1| UDP-N-acetylmuramate [Nitrosococcus halophilus Nc4]
          Length = 457

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 81/278 (29%), Gaps = 18/278 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +       NL  DH D     +A    +       +P     +  A D   + V+   
Sbjct: 175 HYRPRTLVLNNLEYDHADIFPNLEAIQQ-QFHYLVRTVPSNGLILAPAGDNALEAVLAMG 233

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  + +  +          A    +              + L G   V N L A G
Sbjct: 234 CWTPVAPIGMAKEKDCALTAAAVAEDGSRFEVWREGAYQSQVSWSLLGHHNVANGLAAIG 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TI 379
                G+      + LE+   V  R E  G   +G  +Y D+AH   ++   L  +R  +
Sbjct: 294 AAHHAGVPIEQACQALERFQGVRRRLEVCG-KVKGVTVYDDFAHHPTAIAKTLAGLRARV 352

Query: 380 TSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI-- 436
              R+I V     +  + G        AL LAD  ++         P  +   +      
Sbjct: 353 GEARLIAVLEPRSNTMKLGIHKESLAPALTLADRVLLYQ-------PPDLAWPLAPAFHS 405

Query: 437 --PGFIEKGNRIEAIRTAIEMLNKQDVLVVA---GKGH 469
                    +    +        + D +V+    G GH
Sbjct: 406 LGAKASVFADIQAIVDNLCAHAQEGDHIVIMSNGGFGH 443


>gi|260589299|ref|ZP_05855212.1| tetrahydrofolate synthase [Blautia hansenii DSM 20583]
 gi|331082705|ref|ZP_08331828.1| hypothetical protein HMPREF0992_00752 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540380|gb|EEX20949.1| tetrahydrofolate synthase [Blautia hansenii DSM 20583]
 gi|330400324|gb|EGG79966.1| hypothetical protein HMPREF0992_00752 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 433

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 132/425 (31%), Gaps = 53/425 (12%)

Query: 81  DFSATIRSNTPILVVDN----TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQI 136
           D +     + P     N    TRK L +            I+ V GT+GK SV +F+  +
Sbjct: 5   DEAVNYIEDIPKFTTKNKLEHTRKCLDML---DSPDKDRKIIHVAGTNGKGSVCAFLSTM 61

Query: 137 CQRSGLSSFQIGPTSTISSFAQ-------------------------------DNRLTTP 165
            +  G           +    +                               D   T  
Sbjct: 62  LEAHGFRCGLFTSPHLVKINERFQINEVMVSDEAFLEAFLRVKKLADELLEAGDYHPTYF 121

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             ++L   + +     V ++ +E    G        +  IA   T++  DH++Y     A
Sbjct: 122 EFLFLMGMVIFQKE-NVDYIILETGLGGRLDATNAVLNPIACVITSISLDHVEYLGNTIA 180

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
                      + P+        +   ++ + KRAH  GC    V  + + +       I
Sbjct: 181 QI--AGEKAGIIKPQVPVIFDGNNQEAAEVIKKRAHELGCPWCEVKEENQKLLDFTPEGI 238

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
           H   +     + + F              AL   G+           L H  K     GR
Sbjct: 239 HFISRSAAYGDTELFVPFTAKYQMMNASLALETMGVLKEYHGMEKAELVHGMKNTRWQGR 298

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGK 404
            E +        + VD AH  + +   ++ +R       I ++F    D++     ++ K
Sbjct: 299 METILPG-----VIVDGAHNEDGIAKFVETVRHFQKDYEITLLFTTVSDKEFP--DMIAK 351

Query: 405 IALDLADIAIVTDD--NPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           I   L    +VT +    R +   ++       G    + + N  +A   A ++  K  +
Sbjct: 352 ICDGLHFTNVVTTEIWGSRKQSALELAGLFKENGCENVLVETNPEKAFEEAYKL-KKDGL 410

Query: 462 LVVAG 466
           L V G
Sbjct: 411 LFVVG 415


>gi|116492454|ref|YP_804189.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus pentosaceus
           ATCC 25745]
 gi|122266082|sp|Q03GC5|MURC_PEDPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116102604|gb|ABJ67747.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 436

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 82/274 (29%), Gaps = 23/274 (8%)

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN+  DH DY++      +A  ++ +++                  + 
Sbjct: 160 HFIAYHPDYMIMTNVDFDHPDYYKDLADVESAFQQVADQVHKGIFAWGEDES------LR 213

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K   +             F            +   I    K   F   L GE  V N+L 
Sbjct: 214 KINTSVPVYYYGTKENDDFQATNISRTTTGSEFDVIHKGEKLGRFTINLFGEHNVLNSLA 273

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
              +     +D  LV + L     V  RF           +  DYAH  + ++  L   R
Sbjct: 274 VIAVAYFEKVDLDLVQKELLTYQGVKRRF--SKEAVADNILIDDYAHHPSEIKATLDAAR 331

Query: 378 -TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI----RA 430
                 +I+ VF      R         K    LAD  ++T+      ED   +     A
Sbjct: 332 QEFPDKKIVAVFQPHTYSRTAALMDGFAKSLS-LADQVVLTEIFGSAREDAGAVSSQDLA 390

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + I      I + +       AI  L+  D ++V
Sbjct: 391 DKIGNNTKLIHQDDLS-----AISDLH--DAVLV 417


>gi|108758004|ref|YP_630156.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Myxococcus xanthus DK 1622]
 gi|108461884|gb|ABF87069.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Myxococcus xanthus DK 1622]
          Length = 474

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 54/383 (14%), Positives = 112/383 (29%), Gaps = 49/383 (12%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNR 161
           +   S    +   + + V GT GK++ +S +  +   +G   SF +G  +   +      
Sbjct: 95  AALGSLFLDR--SHSVVVAGTHGKTTTSSLMAHVLVAAGKDPSFLVGGVTQNYAGNYRVG 152

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 +                   +  S  L        +      T++  DH D  +
Sbjct: 153 KGPHFVVE---------GDEYDTAYWDKGSKFLHY------RPRTAILTSVEFDHADIFR 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
               ++ A    F  L+P++   ++ A    + ++ +                   +  +
Sbjct: 198 DL-PHYEATFEKFVRLIPQDGQLVVCAAYPNAVKLAREGCPGRVVTYVAKEGADADYTPR 256

Query: 282 VCAIHNK--QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
             +   +  +   ++          P+ G   V NAL        +G+    + + L   
Sbjct: 257 NLSFGPEGARFDVVARGEVQGTVQLPMGGAHNVENALAVIAAAQGLGLTFDEIAQGLATF 316

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGK 398
             V  R E  G    G  +  D+AH   ++   +  I       R+  +F     R    
Sbjct: 317 SGVKRRQEIRG-EPDGVLVIDDFAHHPTAVRETIAAIHHRYPERRLWAIFEP---RSNTS 372

Query: 399 RPIMGKI--------ALDLA-------DIAIVTDDNPRSE--DPEKIRAEIIHGIPGFIE 441
           R  + +         A   +       D        P  E  D  K+  ++         
Sbjct: 373 RRNIHQEDYAHAFPGAARASLKVPERHDKV------PVGEELDVRKLITDLQAQGIPAEG 426

Query: 442 KGNRIEAIRTAIEMLNKQDVLVV 464
             +    +  A       DVL+V
Sbjct: 427 STDVQALVDLAAREARPGDVLLV 449


>gi|75907016|ref|YP_321312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anabaena
           variabilis ATCC 29413]
 gi|122063235|sp|Q3MF19|MURD_ANAVT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|75700741|gb|ABA20417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anabaena
           variabilis ATCC 29413]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 97/290 (33%), Gaps = 13/290 (4%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I  A     L++     +  E SS+ ++      +      +T    DH+  H+T + Y+
Sbjct: 140 IGYAACEVALAATPPDWIIGEMSSYQIESSLT--LAPHISIWTTFTPDHLARHKTLENYY 197

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
           + K +L  +   +                   A+    +        K  +++    +  
Sbjct: 198 DIKAKLLRQSHLQVFNGDDAYLSKIGASHWPDAYWTSVKGKDYLIGDKGFYIEDGWVVEQ 257

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            Q  + S +         + G   + N L+A        I    + + + +   V  R E
Sbjct: 258 LQPNS-SPQRIVAAEALRMVGAHNLQNLLMAVAAARLADIPPNAIDKAVREFPGVAHRLE 316

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            + T      I    A   ++ E+ L ++++      +++   G  +       + KI  
Sbjct: 317 HICTWQGIDFINDSKATNYDAAEVGLASVKS-----PVILIAGGEAKPGDDAAWLAKIQG 371

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
             + + ++ +  P      +   EI  G   +       +A+R ++++  
Sbjct: 372 QTSAVLLIGNAAPAF---AQRLQEI--GYSNYEIVETMEQAVRRSLDLAK 416


>gi|300811426|ref|ZP_07091921.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497584|gb|EFK32611.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 439

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 81/275 (29%), Gaps = 22/275 (8%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + +  Y +A     ++                 + + K  
Sbjct: 165 AYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQTKKGLFVWG------DDERLQKIQ 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                +               V       +  +   G+D  +F   L G+  V NA    
Sbjct: 219 PKTAKKYTYGLKDSDDFQAFDVVKTTEGAKFHVRANGEDLGEFSIHLFGDHNVMNATAVI 278

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
            +    GID  +V + L K      RF           +  DYAH    L   ++  R  
Sbjct: 279 AIAFTEGIDLDVVRKGLVKYTGAKRRFSEKDFG--DTVVIDDYAHHPTELRATIQAARQK 336

Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHG 435
               +++ +F      R +       +I     D A +T       E    I   +I   
Sbjct: 337 FPDRKLVTIFQPHTYSRTKEFEEEYVEIL-KGVDKAFLTPIYGSAREAAGDIKSEDITSQ 395

Query: 436 IPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           IPG       N  +       +  K D +V  G G
Sbjct: 396 IPGAEVIDFDNLKD------LLAYKGDCIVFMGAG 424


>gi|120601533|ref|YP_965933.1| FolC bifunctional protein [Desulfovibrio vulgaris DP4]
 gi|120561762|gb|ABM27506.1| FolC bifunctional protein [Desulfovibrio vulgaris DP4]
          Length = 492

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 11/124 (8%)

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
                R     +D AH  + L  +   +         V+F C  D+D      +      
Sbjct: 345 NPPPCRSLPFVLDGAHNIHGLTALRTALEAQGLRPAAVIFSCLADKDTEALVPLLHDIAA 404

Query: 409 LADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV-----L 462
            A + + T  DN R+ D   +   +    P         +A+R A  +    D      +
Sbjct: 405 GAPVIVPTIADNERAADGATLARRMG---PNARAVPRLHDALREAARLA--GDATVKRPV 459

Query: 463 VVAG 466
           ++ G
Sbjct: 460 LLCG 463


>gi|307332564|ref|ZP_07611614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881785|gb|EFN12921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 483

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 131/412 (31%), Gaps = 51/412 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G E IV +  +          +   + +  +        A RL G+     LAVTGT+G
Sbjct: 76  KGTELIVTTPGWKPTSPLFLAAAEANVPIWGDV-----ELAWRLRGEDAPPWLAVTGTNG 130

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  I + +GL +  +G                               +    +
Sbjct: 131 KTTTVRMLAAILEAAGLRTAAVGNIGVSLLDIVLG------------------DEPYDVL 172

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
           +VE SS+ L       ++  +G+  NL  DH+D+H +  AY  A  +       + +   
Sbjct: 173 AVELSSYQLHW--APSLRAHSGAVLNLAPDHLDWHGSMAAY--AADKGRIYEGNQVACVY 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
             AD A    V       GCR +             V       +  ++   K       
Sbjct: 229 NVADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFVADRQKQAQELAE 288

Query: 303 --LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                 P    + NAL AA L  A G+    V + L      P R E V        I  
Sbjct: 289 VSDVNPPAPHNIANALAAAALARAFGVPPKAVRDGLRAFRPDPHRVEHVADVDGVAYIDD 348

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A  +++ E  L           IV    G  +      ++   A  L  + ++     
Sbjct: 349 SKATNTHAAEASLGAYE------HIVWIAGGLAKGATFDELVLTAAERLRGVVLI----- 397

Query: 421 RSEDPEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
              D   IR  +            +R +      A+R A  +    D +++A
Sbjct: 398 -GADRALIREALARHAADVPVVDLDRTDTGAMAAAVREAARLARPGDTVLMA 448


>gi|16800714|ref|NP_470982.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria innocua Clip11262]
 gi|24212046|sp|Q92BA4|MURC_LISIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16414133|emb|CAC96877.1| murC [Listeria innocua Clip11262]
 gi|313623565|gb|EFR93744.1| UDP-N-acetylmuramate--alanine ligase [Listeria innocua FSL J1-023]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 137/429 (31%), Gaps = 57/429 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++       N P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERANELNLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +   +            +   +   +  +   T+  + 
Sbjct: 115 TTGLLSHVVGAIRPTSYLIGDGTGSGTKDAKY-----FALEACEYQRHFLAYKPTYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 169 ---------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K + +        G + +F            +      +     F  P  G
Sbjct: 204 GDDVE--LRKLSLDVPIIYFGFGSENEFQAKNVKKETTGTKFDVYHRDEFLASFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V + L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVDEVKKELKTFEGVKRRFSIT--EKGNQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD--DNPRSEDP 425
           +   +   R     + IV         + +  + G   +L+LAD   + D   + R +  
Sbjct: 320 IRATVNAARQKYPNKKIVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTG 379

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGHETVHIVTNGEKKMSV 484
               A++ H   G               E+L   + V++  G G   V       +K+  
Sbjct: 380 NLTIADLAHKTKGNHIIKE-----EHTEELLQYPEAVILFMGAG--DVQKFQAAYEKVLD 432

Query: 485 DCDIIREIL 493
           +  +  E+L
Sbjct: 433 NEIVANEVL 441


>gi|89075543|ref|ZP_01161948.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
 gi|89048683|gb|EAR54255.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
          Length = 462

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 103/359 (28%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   ++AV+GT GK++ AS +  I +  G    F +G        +     +    +   
Sbjct: 113 HDRWVMAVSGTHGKTTTASMLAWILEDCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 172

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 173 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLKAIQ---- 213

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P           + +      GC        G      +          
Sbjct: 214 -RQFHHLVRTVPGNGRILAPKGVKNIDETLEMGCWSELEYIGGDGHWRAEKHHADGSVFD 272

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       +PL G+  V NAL+A G    +G+   L  E L K      R E  G 
Sbjct: 273 VYLDSDIVGTVHWPLVGDHNVNNALMAIGAARHVGVTPDLACEALAKFINTKRRLELKG- 331

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   RI+ V     +  + G        +L  
Sbjct: 332 EVNGVTVYDDFAHHPTAIELTLGGLRAKVNQSRILAVLEPRSNTMKLGVHKDDLAPSLHA 391

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
           AD             P  I     EI            +  + +          D ++V
Sbjct: 392 ADQVFFFQ-------PPNIPWSVEEIAEQCSQPAYCSADLDDLVNNITSKAQPGDTILV 443


>gi|329954168|ref|ZP_08295263.1| Mur ligase family, glutamate ligase domain protein [Bacteroides
           clarus YIT 12056]
 gi|328528145|gb|EGF55125.1| Mur ligase family, glutamate ligase domain protein [Bacteroides
           clarus YIT 12056]
          Length = 270

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 70/216 (32%), Gaps = 15/216 (6%)

Query: 262 NAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             G ++ +        H + +           ++ + +  D    +P    + N + A  
Sbjct: 40  QPGVKIYTYSRDEGDFHAENIRIGNGEIFIDFVAPDTRINDIRLGVPIGINIENGVAAMA 99

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           L    G+    + + +     V  RF+F    +       DYAH    +   +K+IR + 
Sbjct: 100 LAHLNGVTDEEIKQGMASFRGVDRRFDF-KIKTDKLVFLSDYAHHPAEIAQSVKSIRELY 158

Query: 381 SGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEI 432
             + I          R +            L D  I+T+  P  E P        I   +
Sbjct: 159 KDKKITAIFQPHLYTRTKDFYKDFADSLS-LLDEVILTEIYPAREQPIPGVSSRLIYDNL 217

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             GI   I K    E I   +      +VL+V G G
Sbjct: 218 RPGIEKCICK---KEDIPALLAK-KPIEVLIVLGAG 249


>gi|308233779|ref|ZP_07664516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium vaginae
           DSM 15829]
 gi|328943772|ref|ZP_08241237.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
 gi|327491741|gb|EGF23515.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
          Length = 493

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 129/374 (34%), Gaps = 44/374 (11%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +   P+  +A+TGT+GK++  + ++ + +     +  +G          D+ L       
Sbjct: 108 WRCRPQKWVAITGTNGKTTTTTLIEHMIRADHKQACAVGNIGRACLGEVDHHL------- 160

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                        T    E SS  L + +L  +   A    N+  DHI++H + QAY  A
Sbjct: 161 -----------ADTWFVAELSSFQLAETKL--LHPHAAILLNITPDHIEWHGSMQAYA-A 206

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
                   L  +  AII  DD Y K +  R    G   + V        L+      +  
Sbjct: 207 AKERIFANLTTDDLAIISRDDLYCKAIYSRLVERGLSPVCVDTSQDPKTLQAAYCSDSML 266

Query: 290 QVTISVEGKDFDF--LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
            V ++             L G   + N L A+ L + IG+    + + L+    +  R E
Sbjct: 267 YVRLNGTTTPLIKASEAALKGMHNIQNMLAASALALFIGVSVDAIRQVLQTFTTLEHRLE 326

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI-- 405
           +V T      +    A  ++S+E  L        G  IV+ G G D+      ++ ++  
Sbjct: 327 YVATIHGVSFVNDSKATNTDSVEKALTA---FPCGSTIVLLG-GHDKQTDLSSLVHQVVR 382

Query: 406 ----------ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG-----FIEKGNRIEAIR 450
                     A       +V+  N ++ D E    +    +            +  +A  
Sbjct: 383 KCRGAICFGEAGQRIYHELVSVQNAQASDGEGACDKCKSAVASAPLSFVKCVPHLRDAFD 442

Query: 451 TAIEMLNKQDVLVV 464
            A+        +++
Sbjct: 443 CAVTHAKPHTTVLL 456


>gi|152990837|ref|YP_001356559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
 gi|151422698|dbj|BAF70202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
          Length = 474

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 123/360 (34%), Gaps = 41/360 (11%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A +        I+AVT + GK+S+ +F+ Q+ + S          +T++   +D     P
Sbjct: 145 ARKKLETIDPTIIAVTASYGKTSIKNFIYQLLKDSYHVYKTPRSVNTLAGIIKDINTALP 204

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
               +    +             A   G        +         +G  HI+Y +T + 
Sbjct: 205 QVCEVYVVEA------------GARERGDILEITKFLNHHYAVVGKVGPQHIEYFKTLEN 252

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               K+ +      K++            + +K                   ++K V A 
Sbjct: 253 IIATKLEILHSKRLKKAFLWDGLPVKDDPKFVK----------------FGSNIKNVKAD 296

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
            +     + ++G+ F F  P+ G F  +N   A  +   +GID A + + + +L  V  R
Sbjct: 297 LDGVSWDLELQGEIFHFQAPILGGFNAFNITAAILVAKELGIDMATLQKRVSQLKGVEHR 356

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            + +        I   +      +    + ++    GR +VV     + D+     + K 
Sbjct: 357 LQRI-EAGGKVIIDDSFNGNLEGMIASYELVKNY-PGRKVVVTPGIVESDEKSNIELAKK 414

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLV 463
             ++ D+AI+T          KI  E++       +    ++ +      +     D+++
Sbjct: 415 INEVFDLAIITG---------KINKEVLQKNITIEKIMVEDKKQLQNLLAKHTKSGDLIL 465


>gi|148359297|ref|YP_001250504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
 gi|148281070|gb|ABQ55158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
          Length = 441

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 132/368 (35%), Gaps = 35/368 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNR 161
              A  +  K+   ++AV GT GK++  S +  I  ++G+   F IG  S+  + +    
Sbjct: 81  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLG 138

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 I   +  S    +                      +       NL  DH D + 
Sbjct: 139 KGRWFVIEADEYDSAFFDKRPKF---------------MHYRPNIAVLNNLEFDHADIYP 183

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              A    +       +PK   AI   DD    EV+ R      R+ ++   G    + +
Sbjct: 184 DLAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQF--SRIETLALSGDAEWVAE 240

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      Q   +       +  +PL G+F V N L A       G++  +  + LE+   
Sbjct: 241 LIDDSGSQFKILHNGVMVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSP 300

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E   +N  G  +Y D+AH   ++   +  ++   SGR   +F          R  
Sbjct: 301 VKRRLEV-RSNRHGVTVYDDFAHHPTAITKTIDALKR--SGRHQRIFAVMEFASYTMRTG 357

Query: 402 M--GKIALDLA--DIAIVTDDNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEML 456
           +  G++A  LA  D A V       E  +    + +   I  +    N  E ++  I+ +
Sbjct: 358 VHAGEMAHALAPVDGAYV------LEPQDFNLKDFVSSWICPYKICKNNGEIVKEIIKTV 411

Query: 457 NKQDVLVV 464
            + D ++V
Sbjct: 412 REGDAVLV 419


>gi|57237678|ref|YP_178926.1| hypothetical protein CJE0924 [Campylobacter jejuni RM1221]
 gi|57166482|gb|AAW35261.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
          Length = 313

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L      EL+N + I        +    + +   ++AG+ F        D    I
Sbjct: 1   MQISNL-----GELLNAILIHEGSVLSAE--GFAINLNELKAGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ +GA AI+  +  +++D       +     V+N  + L  F            L  
Sbjct: 48  TQAVKKGAYAIITENDITIED------KDIFYFRVENLEQALVRFLRFFCEDKECEFLLF 101


>gi|189347180|ref|YP_001943709.1| UDP-N-acetylmuramate [Chlorobium limicola DSM 245]
 gi|189341327|gb|ACD90730.1| UDP-N-acetylmuramate [Chlorobium limicola DSM 245]
          Length = 474

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 84/270 (31%), Gaps = 16/270 (5%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D   + +    +  RLF  L+P+    ++  DD  +  V  +A     R 
Sbjct: 187 IINNIEFDHADIFDSLEDIRKS-FRLFVNLIPRNGTLLVNGDDPEACAVASKAFCRTERF 245

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                                      +         PL G+  + N L A       G+
Sbjct: 246 GFDQECEWTAKDMNTEENVTTFS-IFHLGNPQGKVRIPLFGKHNIMNTLAAVAAARHAGL 304

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               + E L        R E       G  +  D+AH   +++  L+ +  +  GR IV 
Sbjct: 305 SMETIAEALPLFKRPKRRMEITEGFESGITLIEDFAHHPTAIKATLEAVSELCIGRRIVA 364

Query: 388 FGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSE--------DPEKIRAEIIHGIPG 438
                     +     ++A        +V     R E        D EK+R E+      
Sbjct: 365 CFEPRSNTTTRNIFQKELARCFGPASVVVMGMVHRPERYAPDDRLDTEKLRRELEEREKT 424

Query: 439 FIEKGNR-----IEAIRTAIEMLNKQDVLV 463
               G++      + +R     L K DV+V
Sbjct: 425 VFLAGSQPDDYPADIVRFLKSTLKKNDVVV 454


>gi|315927702|gb|EFV07031.1| hypothetical protein CSQ_0822 [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 289

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++ G+ F        D    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKTGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ +GA AI+  +  +++D             V+N  + L  F            L  
Sbjct: 48  AQAVKKGAYAIITENDITIEDKE------IFYFRVENLERALVRFLRFFCEDKECEFLLF 101


>gi|315173293|gb|EFU17310.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1346]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D       +       +  +              A     ++  + E         +
Sbjct: 218 -AEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   +   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAESVQTAVTIAFDYSEKDDTILL 424


>gi|294651909|ref|ZP_06729199.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822232|gb|EFF81145.1| UDP-N-acetylmuramate--L-alanine ligase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 481

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 9/230 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 187 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAVVCGDDANIREILPRVG 246

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAG 320
                               V     +   T+  + ++        PG   V NAL A G
Sbjct: 247 RPVITYGFDEDNDI--RAIDVEQDGMRSHFTVLRKDREPLRVTVNQPGLHNVLNALAAIG 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR 377
           +    G+    +   L     V  RF+  G    G    ++  DY H    +E  +K  R
Sbjct: 305 VATDEGVSDDAICRALAGFSGVGRRFQVQGEFEVGDGLVKLVDDYGHHPKEVEATIKAAR 364

Query: 378 TITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP 425
                R +V+        + +       ++     D  ++ +     E P
Sbjct: 365 ASHPDRRLVMLFQPHRYSRTRDCFDDFVEVLSQ-VDQLLLLEVYSAGEKP 413


>gi|312952735|ref|ZP_07771597.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0102]
 gi|310629251|gb|EFQ12534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0102]
 gi|315153069|gb|EFT97085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0031]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 89/279 (31%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +D       +       +  +              A     ++  + E         +
Sbjct: 218 -VEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A     K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFNYSEKDDTILL 424


>gi|283458379|ref|YP_003363003.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rothia mucilaginosa
           DY-18]
 gi|283134418|dbj|BAI65183.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rothia mucilaginosa
           DY-18]
          Length = 528

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 121/419 (28%), Gaps = 58/419 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S                 I +  +    L+   +    +     L +TGT+GK++ 
Sbjct: 115 LVVTSPGVRPDHPVMLDAYERRIQIWGDVE--LAWRLNERNDRPTPKWLCLTGTNGKTTT 172

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V  I + +G  S Q+G                          +    +     +VE 
Sbjct: 173 VGMVDSILKAAGKKSIQVGNVGMP------------------IVYAIADDEPYEFFAVEL 214

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L       +   A    N+  DH+D+H +   Y   K R++E           + D
Sbjct: 215 SSFQLHW--TYSMSPYASVVLNIAEDHVDWHGSFDGYKADKARVYEHTQVACIFNTDHVD 272

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------- 300
                E       A     S         L     I   +    +   + +         
Sbjct: 273 TLRMVENADVIEGARAIGFSSTEMPAVSMLGLAEDIMVDRAFLKNRYNEAYELAVLEDLA 332

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +P +  V NAL AA LC A  ID   V   L        R + VG  +    +  
Sbjct: 333 PAPGKMPAKHTVENALAAAALCRAADIDPKAVGAGLRSFKTGAHRNQLVGYANDIMWVND 392

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   ++    +    ++      V    G  +      ++   A  L  + I+  D  
Sbjct: 393 SKATNPHAANASMSGYPSL------VWIAGGLSKGVEYDELIAAHAKRLKAVLIIGTDT- 445

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-----AIEML---------NKQDVLVVA 465
                  +++ + +  P      N   A+       A+            +  D +++A
Sbjct: 446 -----AALKSALANHAPQVPTY-NMTAAVADSSDGVAVMNAAVAKAAELAHPGDTVLMA 498


>gi|54310305|ref|YP_131325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum SS9]
 gi|60390455|sp|Q6LMF4|MURD_PHOPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46914746|emb|CAG21523.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Photobacterium profundum SS9]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 144/397 (36%), Gaps = 55/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L            I +V +         +R+  K    ++A+TG++GKS
Sbjct: 69  ADLIVASPGIALATPELVAAKAAGIEIVGDI-----ELFARVVTKP---VVAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V S + ++ + +G++    G                 + + +      L         +
Sbjct: 121 TVTSLIGEMAKEAGINVGVGGNIG-------------FAALDMLVNEHDL-------YVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++L A  + NL  DH+D +   + Y  AKMR+FE        A+  
Sbjct: 161 ELSSFQLET--TSSLQLKAAVYLNLSEDHMDRYNGLEDYSLAKMRIFEH----AELAVYN 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD         A         +   G       +  +H ++ + +  +         L 
Sbjct: 215 RDD--------LATFPVSFSHQITSFGFDNQDYGLVTLHGEEFLALDEQPIMKTSDIALV 266

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N+L A  L  A+ ID   V   L++ + +  R + V        +    A    
Sbjct: 267 GRHNVANSLAALALADAVNIDRQAVCRALQRYNGLAHRCQLVVNQHDVKWVNDSKATNLA 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    LK +     G++ ++ G  G     K     ++ L LAD+ +      R  +   
Sbjct: 327 STLAALKGLNL--PGKLHLLVGGDG-----KGADFSELKLVLADLNVQLYCFGRDGN--- 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  +   I      +A+  A +   K D++++
Sbjct: 377 ---QFMPLVDAPICIETMAQAMAIAADTAQKGDMILL 410


>gi|315282543|ref|ZP_07870931.1| UDP-N-acetylmuramate--alanine ligase [Listeria marthii FSL S4-120]
 gi|313613809|gb|EFR87565.1| UDP-N-acetylmuramate--alanine ligase [Listeria marthii FSL S4-120]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 109/350 (31%), Gaps = 47/350 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           I+  +A+    ++    +    P++      KFL               +A+TG+ GK+S
Sbjct: 64  IIAGNAFPDTHEEIERALELGLPVIR---YHKFLGQLIDGYTS------IAITGSHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +   +   +        +   +   +  +   T+  + 
Sbjct: 115 TTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEY-----FALEACEYQRHFLAYKPTYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY ++    FNA   L ++       A+   
Sbjct: 169 ---------------------TNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFAL 203

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D     + K   +          + +F     +      +            F  P  G
Sbjct: 204 GDDAE--LRKLTLDIPIIYFGFDEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  V NAL    LC   G+    V   L+    V  RF           +  DYAH  + 
Sbjct: 262 DHNVLNALSVIALCDYEGLPVEAVKNELKTFEGVKRRFSIT--EKANQVLVDDYAHHPSE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD 417
           +   +   R     + +V         + +  + G   +L+LAD   + D
Sbjct: 320 IRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCD 369


>gi|134293160|ref|YP_001116896.1| FolC bifunctional protein [Burkholderia vietnamiensis G4]
 gi|134136317|gb|ABO57431.1| FolC bifunctional protein [Burkholderia vietnamiensis G4]
          Length = 436

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     R
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHAAAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLR 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+   E++ A +   G+            +  +A R A
Sbjct: 351 HLKGEI-----DHWCVTDLPLPRAASAEQLEAALRHAGVQDGPDSSVTRFASPADAFRDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|312149248|gb|ADQ29319.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi N40]
          Length = 468

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 130/417 (31%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+       + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +   +  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A    +   L K    II 
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEA-FLQYINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +DD    ++ ++ +     + S G              +           ++VE K   F
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSEYFCFSFLGLLNVELKTVLF 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L     +    +          D    ++ + K +    R   V     G     DY
Sbjct: 286 HNVLNFSAALLALNLFLESNGRSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIV----- 415
           AH    ++  L  I+     + I++        R +       ++  D ADI I+     
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSD-ADILILHNIYL 404

Query: 416 ---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|296107344|ref|YP_003619044.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649245|gb|ADG25092.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 132/368 (35%), Gaps = 35/368 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNR 161
              A  +  K+   ++AV GT GK++  S +  I  ++G+   F IG  S+  + +    
Sbjct: 95  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLG 152

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 I   +  S    +                      +       NL  DH D + 
Sbjct: 153 KGRWFVIEADEYDSAFFDKRPKF---------------MHYRPNIAVLNNLEFDHADIYP 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              A    +       +PK   AI   DD    EV+ R      R+ ++   G    + +
Sbjct: 198 DLAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQF--SRIETLALSGDAEWVAE 254

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      Q   +       +  +PL G+F V N L A       G++  +  + LE+   
Sbjct: 255 LIDDSGSQFKILHNGVMVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSP 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E   +N  G  +Y D+AH   ++   +  ++   SGR   +F          R  
Sbjct: 315 VKRRLEV-RSNRHGVTVYDDFAHHPTAITKTIDALKR--SGRHQRIFAVMEFASYTMRTG 371

Query: 402 M--GKIALDLA--DIAIVTDDNPRSEDPEKIRAE-IIHGIPGFIEKGNRIEAIRTAIEML 456
           +  G++A  LA  D A V       E  +    + +   I  +    N  E ++  I+ +
Sbjct: 372 VHAGEMAHALAPVDGAYV------LEPQDFNLKDFVSSWICPYKICKNNGEIVKEIIKTV 425

Query: 457 NKQDVLVV 464
            + D ++V
Sbjct: 426 REGDAVLV 433


>gi|254303156|ref|ZP_04970514.1| tetrahydrofolate synthase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323348|gb|EDK88598.1| tetrahydrofolate synthase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 415

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 124/361 (34%), Gaps = 27/361 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---TISSFAQDNRLTTPS-- 166
           +    ++ +TGT+GK SV++ V++I   +G    +               +++  +    
Sbjct: 40  EKSYKVIHITGTNGKGSVSTTVERILLDAGYKVGKYTSPHILKFNERIIFNDKYISDENV 99

Query: 167 ---------PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                     I      +         +         D   L+         TN+  D+I
Sbjct: 100 AKYYERVKKIIDEHNIQATFFEVTTAMMFDYFKDMKADYVILEAGMGGRYDATNVC-DNI 158

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ-GKF 276
               T  +  + +          +  A I  +  Y+               +        
Sbjct: 159 VSVITNVSLEHTEYLGDTIYKIAKEKAGIIKNCPYTIFADNNPDVKKAIEEATDKYVNVL 218

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
              +      +    T ++      + + L G++Q  N L A  +   +GID  ++ E +
Sbjct: 219 EKYRDSTYSLDFNTFTTNILINGNKYEYSLFGDYQYKNFLCAYEVVKYLGIDENIIKEAV 278

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF-GCGGDRD 395
           +K+     RFE     S+   +  D AH    +E ++K ++   S   + +      D+D
Sbjct: 279 KKVIWQC-RFEVY---SKNPLVIFDGAHNLAGVEELIKIVKQHFSKDEVTILVSILKDKD 334

Query: 396 QGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
              R  M +   +++   ++T   DNPR+   +++  + +     F  + + I+A   A+
Sbjct: 335 ---RVSMFRKLNEISSNIVLTSIPDNPRASTAKELY-DYVENKKDFEYEEDPIKAYNLAL 390

Query: 454 E 454
            
Sbjct: 391 S 391


>gi|315058287|gb|ADT72616.1| hypothetical protein CJS3_0881 [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 313

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L      EL+N + I        +    + +   ++AG+ F        D    I
Sbjct: 1   MQISNL-----GELLNAILIHEGSVLSAE--GFAINLNELKAGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ +GA AI+  +  +++D       +     V+N  + L  F            L  
Sbjct: 48  TQAVKKGAYAIITENDITIED------KDIFYFRVENLEQALVRFLRFFCEDKECEFLLF 101


>gi|212703563|ref|ZP_03311691.1| hypothetical protein DESPIG_01608 [Desulfovibrio piger ATCC 29098]
 gi|212673007|gb|EEB33490.1| hypothetical protein DESPIG_01608 [Desulfovibrio piger ATCC 29098]
          Length = 427

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 110/369 (29%), Gaps = 13/369 (3%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            +     + P  +  + GT+GK S ++F+  + +  G  +        +S   +      
Sbjct: 36  LSRLGLSRPPFVVAQIVGTNGKGSTSAFLDSLSRAHGCRTGLYTSPHFLSPCERIRIDGV 95

Query: 165 PSPIYLAKALSYLSS---QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
           P P  L   L+         +T+         L   R      +  +      D      
Sbjct: 96  PLPGALWPELATEVYAARPDLTYFEFLTVLAILAFARQGVQLAVMEAGLGGAHDATTALA 155

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +    F         +L      +          +  R             +      ++
Sbjct: 156 SDLTCFAPVAMDHAAILGPT---LRDIALDKCGAIRPRVPVVSAPQFPAAEEVLHRQAEQ 212

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           + A  +                          +A  A    + +      V   L +  V
Sbjct: 213 LAAPLHIVSPLPGNMPLGLAGPHQRINAAVALHAWQALAPRLHVTPRPDAVARGLAQAFV 272

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR + V    +   + +D AH ++ +  +L ++R         ++ C GD+D     +
Sbjct: 273 -PGRLQSVPATDQHPPLLLDGAHNAHGMAALLAHVRQSGLRPRAAIYSCLGDKDWHPALM 331

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQD 460
           + K AL  A + I    N R+ D  ++ A      P       +   A+    ++    D
Sbjct: 332 LLKRALGDAPLFIPALHNERAADATQVVATANAAAPANATLLPDVRNALDAVRDL--PGD 389

Query: 461 V---LVVAG 466
               ++++G
Sbjct: 390 DKAPVIISG 398


>gi|226953384|ref|ZP_03823848.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|226835861|gb|EEH68244.1| UDP-N-acetylmuramate--alanine ligase [Acinetobacter sp. ATCC 27244]
          Length = 481

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 77/230 (33%), Gaps = 9/230 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 187 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAVVCGDDANIREILPRVG 246

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAG 320
                               V     +   T+  + ++        PG   V NAL A G
Sbjct: 247 RPVLTYGFDEDNDI--RAIDVEQDGMRSHFTVLRKDREPLRVTVNQPGLHNVLNALAAIG 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR 377
           +    G+    +   L     V  RF+  G    G    ++  DY H    +E  +K  R
Sbjct: 305 VATDEGVSDDAICRALAGFSGVGRRFQVQGEFEVGDGLVKLVDDYGHHPKEVEATIKAAR 364

Query: 378 TITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP 425
                R +V+        + +       ++     D  ++ +     E P
Sbjct: 365 ASHPDRRLVMLFQPHRYSRTRDCFDDFVEVLSQ-VDQLLLLEVYSAGEKP 413


>gi|255279944|ref|ZP_05344499.1| UDP-N-acetylmuramate--alanine ligase [Bryantella formatexigens DSM
           14469]
 gi|255269717|gb|EET62922.1| UDP-N-acetylmuramate--alanine ligase [Bryantella formatexigens DSM
           14469]
          Length = 459

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 132/427 (30%), Gaps = 47/427 (11%)

Query: 64  IAQGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVT 121
           I +G + +V ++A      ++ A   +  P+L    TR   +    +L   +P   +AV+
Sbjct: 66  IKEGTDLVVYTAAIHPDNPEYKAAADAGIPML----TR---AELLGQLMKNYPVP-IAVS 117

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           GT GK++  S +  +          I     +     + R+               S   
Sbjct: 118 GTHGKTTTTSMISHLLLADNDD-PTISVGGILPVIHGNIRVGGGDIFLTEACEYTNSFLD 176

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
                                    G   N+  DH+D+ +      ++  R F  LLP  
Sbjct: 177 FF--------------------PKIGIILNIDADHLDFFKDINDIRHS-FRRFARLLPAN 215

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              II       +E+                +G          +                
Sbjct: 216 GTLIINRAIPQVEEITDGLACRVIYYGVQEGRGYSAENISYNELACASFDLKRDGELLGH 275

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           +   +PG   V NA+ A  L   + I      + L+       RF++ G    G  I  D
Sbjct: 276 YELCVPGIHNVENAVAALALADLLQIPRQTAQKGLKDFTGTDRRFQYKG-KVGGVTIVDD 334

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
           YAH    +   L   +      +  VF      R +       K AL LAD  ++ D   
Sbjct: 335 YAHHPTEITATLTAAKNCPHETLWCVFQPHTYTRTKALMDDFAK-ALSLADKVVLADIYA 393

Query: 421 RSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRT-AIEMLNKQDVLVVAGKGHETVH 473
             E        + +R +I           +  E I T  +E     D+L+  G G     
Sbjct: 394 ARETDNLGISSDTLREKIEALGTEAYYFPSFDE-IETFLLEKCVHGDLLITMGAGD---- 448

Query: 474 IVTNGEK 480
           IV  GEK
Sbjct: 449 IVKIGEK 455


>gi|218296771|ref|ZP_03497477.1| UDP-N-acetylmuramate/alanine ligase [Thermus aquaticus Y51MC23]
 gi|218242860|gb|EED09394.1| UDP-N-acetylmuramate/alanine ligase [Thermus aquaticus Y51MC23]
          Length = 446

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 48/146 (32%), Gaps = 9/146 (6%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +L+ L +   V  RF+ VG    G  +  DYAH    +   L+        RI V+F 
Sbjct: 290 EAILKGLFRFPGVGRRFQKVG-EVGGAWVVDDYAHHPTEVRATLEAA-GHLGRRIRVLFQ 347

Query: 390 -CGGDRDQGKRPIMGKIALDLADIAIV---TDDNPRSEDPEKIRAEIIHGIPG---FIEK 442
                R Q       +      ++ ++   T        PE +   I  G+         
Sbjct: 348 PHRLLRTQALWEEFVEALAQAQEVVVLPVYTAGERAQVSPEALSQRIAEGLKARGVAACY 407

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
               EA+  A       D+ +  G G
Sbjct: 408 LEGEEALAYARATAGPGDLWLALGAG 433


>gi|157147793|ref|YP_001455112.1| hypothetical protein CKO_03597 [Citrobacter koseri ATCC BAA-895]
 gi|157084998|gb|ABV14676.1| hypothetical protein CKO_03597 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 98/360 (27%), Gaps = 38/360 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              +LAV GT GK++ A     I +  G    F IG        +     +    I   +
Sbjct: 90  DRWVLAVAGTHGKTTTAGMATWILEACGYQPGFVIGGVPGNFDVSARLGESHFFVIEADE 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                  +    V                         NL  DH D     +A       
Sbjct: 150 YDCAFFDKRSKFV---------------HYCPRTLILNNLEFDHADIFDDLKAIQ----- 189

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P             +K+    GC         +     K           
Sbjct: 190 KQFHHLVRIVPGQGRIIFPEHDINLKQTIAMGCWSEQELVGEQGHWQAKKLNADASVWEV 249

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                K  +  + L GE  + N L+A      +G+  A     L        R E  G  
Sbjct: 250 WLDGEKAGEVKWSLVGEHNMNNGLMAIAAARHVGVMPADAANALGSFINARRRLELRG-E 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL- 409
           + G  +Y D+AH   ++   L  +R+   G  RI+ V        +     MG    DL 
Sbjct: 309 ANGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEP-----RSNTMKMGLCKDDLA 363

Query: 410 -----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                AD   +         P ++       +      G+        ++     D ++V
Sbjct: 364 PSLGRADEVFLLQPQH---IPWQVAEVADACVQPAHWSGDVDALADMVVKTAQPGDHILV 420


>gi|114046998|ref|YP_737548.1| FolC bifunctional protein [Shewanella sp. MR-7]
 gi|113888440|gb|ABI42491.1| FolC bifunctional protein [Shewanella sp. MR-7]
          Length = 432

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 109/367 (29%), Gaps = 23/367 (6%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++ V GT+GK +  + ++ I + SGL+         +    +       +      A
Sbjct: 56  PSKVVTVAGTNGKGTTCAMLENILRLSGLTVGVYSSPHMLKYNERVRINGQDASDEAFVA 115

Query: 174 LSYLSSQGVTHVSVEASSHG------------LDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                      +S+    +             LD   L+         TN+    I    
Sbjct: 116 AFEQIEAARGEISLTFFEYATLAGLILFKAAKLDVVILEVGLGGRLDATNMIDADISVVT 175

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +      A +    EL+ +E   I          ++   +            G  ++   
Sbjct: 176 SVDLDHEAYLGNTRELVGREKAGIFRQGRPA---IVGEPNLPHTVNDVAQDVGAKLYRVG 232

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLH 340
               + +   T   +G+ F           + NA     +        +A ++       
Sbjct: 233 EEFSYQQDGHTWDYQGQLFTLKQLSLPTLPLPNAATVIAIVEHGWPHIAADIIAKGISSA 292

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            + GR E V   +    I +D AH  ++   ++K +  + +G+   VF   G        
Sbjct: 293 RLTGRLEQV---NEQPLILLDVAHNPHAARFLVKQLTPMVTGKR--VFALCGMLKDKDIA 347

Query: 401 IMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +  +   L D   +      R  +   +R  +        E  +   A       +   
Sbjct: 348 GVLPVVSPLIDTWYLVSLQGERGANASLLRQTLAQD-TKAHEFDDIASAWTALKAQIQPD 406

Query: 460 DVLVVAG 466
           DV++V G
Sbjct: 407 DVVIVFG 413


>gi|253997368|ref|YP_003049432.1| UDP-N-acetylmuramate--L-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984047|gb|ACT48905.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera mobilis JLW8]
          Length = 479

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 137/414 (33%), Gaps = 58/414 (14%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKH-PENILAVTGTSGKSSVASFVQQ 135
           +  +  A      P++     R   L+       G          T TS  +S+      
Sbjct: 77  ANPEVKAARAKKIPVV----PRALMLAELMRFKQGIAVAGTHGKTTTTSLIASI------ 126

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + +     +F IG    + +   + +L T   I      S  S                 
Sbjct: 127 LGEAGMDPTFVIG--GKLEAANANAKLGTGDYIVAEADESDASFLH-------------- 170

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  +    TN+ +DH+D ++       +    F + LP    A++  DDA  +E
Sbjct: 171 ------LTPVMAVVTNIDQDHMDTYEHSFEKLKSAFVEFLQQLPFWGMAVVCVDDANIRE 224

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK---DFDFLFPLPGEFQV 312
           ++ R       +     +   I  K V A   K   T+        +FD    LPG   V
Sbjct: 225 ILPR--VTKPVMTYGLSEDARIRAKNVRADDGKMHFTVQRINGVTTEFDVTLNLPGNHYV 282

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI---------YVDYA 363
            NAL A  +   + +  A +++ L++   V  RFE  G      R            DY 
Sbjct: 283 LNALAAIAIASELNVPDAAIIKALKEFKGVGRRFERYGEVPAMPRNAASAGTFTLIDDYG 342

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPR 421
           H    ++ ++   R     R +V+        + +       ++    AD+ ++T+    
Sbjct: 343 HHPVEMQAVIAAARGAFPNRRLVMAFQPHRYTRTRDCFEDFVRVLSS-ADVVLLTEVYSA 401

Query: 422 SE------DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E      D   +   I   G    +      E  +  +++ +  DV++V G G
Sbjct: 402 GEASIVAADTRSLIRAIRVAGKVEPLFVETTDELPQAILDIAHADDVVIVMGAG 455


>gi|17546698|ref|NP_520100.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Ralstonia solanacearum GMI1000]
 gi|17428997|emb|CAD15681.1| probable bifunctional protein: folylpolyglutamate synthase and
           dihydrofolate synthase [Ralstonia solanacearum GMI1000]
          Length = 432

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPI 401
           PGRF+ +        + +D AH  ++   + +N+  +   R    VFG   D+D     +
Sbjct: 290 PGRFQVMPGRPA---VILDVAHNPHAAAALGQNLENMGFFRYTYAVFGAMQDKDIAG--V 344

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGIP-----GFIEKGNRIEAIRTAIE 454
           +G +     D   +TD   PR+    ++   +   G            G+   A R A+E
Sbjct: 345 LGHLLDK-VDHWCLTDLPTPRAASAAQLEQALADAGFSPGKEASVATYGDPATAYRNAME 403

Query: 455 MLNKQDVLVVAG 466
              + D +VV G
Sbjct: 404 RATEDDRIVVFG 415


>gi|325123476|gb|ADY82999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 87/282 (30%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENSNVVGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G    G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVTLEQACEALSNFGGVKRRMELLG-TVNGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIAAASNRAQVSRSLDEIIERIVNEAGEGDAVVI 435


>gi|163787491|ref|ZP_02181938.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteriales bacterium
           ALC-1]
 gi|159877379|gb|EDP71436.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteriales bacterium
           ALC-1]
          Length = 450

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 75/233 (32%), Gaps = 28/233 (12%)

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   + V   +      +      + DF F LPG   + NA++A  + +  G    
Sbjct: 235 EDDSDYSAQNVKIKNGSYVFDMQTPDGIYKDFQFNLPGRHNLSNAIIALAMAVDFGCPYN 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFG 389
            + + L     V  RF      +       DYAH    +  + + +R +   R +  VF 
Sbjct: 295 QLAKGLASYKGVKRRF-TYQIKTEDFVFIDDYAHHPEEINAVHQAVREMYPDRKVLAVFQ 353

Query: 390 -CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEK 442
                R +       +      D  ++ D  P  E P +      I  ++ +     I+K
Sbjct: 354 PHLYTRTRDFIDGFAESLSKF-DELLLLDIYPARELPIEGVTSSWILNKVENSSKKLIQK 412

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGL 495
              I+ I+          V++  G G      +    K        I+E+  +
Sbjct: 413 SELIDEIKK--SDAQ---VVLTIGAG-----DIGEEVKY-------IKEVFSV 448


>gi|167614204|gb|ABZ89707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 439

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 108/356 (30%), Gaps = 44/356 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
              +    I+A+TGT+GKS+VA+ + +I Q SG ++   G            +       
Sbjct: 100 FVREISTPIIAITGTNGKSTVATMITKIAQNSGYNALLGGNIGCPVLNLLHQKRDL---- 155

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  L+      +K       N+  DHI+ +      + 
Sbjct: 156 ----------------YIIELSSFQLE--NTFNLKSKISVILNIHEDHINRYPQGFEQYK 197

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
                                +    +  K   + G +         +I+      I   
Sbjct: 198 KTKLSIYHGAEICIMNSHDQLNDIFDDKNKHYISFGKK-----NSDYYIYKNDTSFILCC 252

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           +   I    +         G     N LV+  +  A+       +  L+    +P RF+ 
Sbjct: 253 KNEKILNSSELLL-----SGYHNYNNVLVSIAIADAMKFSRQYTIYTLKNFSSLPHRFQT 307

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           +   +    I    +   NS ++ L ++    + +  +    GGD   G   I+ K    
Sbjct: 308 IQNKNNIDWINDSKSTNVNSTQVALNSL----TKKGTIHLLLGGDSKSGNFNILKKYFNK 363

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                         +D  KI   I       I   N  +A+    + +   D +++
Sbjct: 364 KNIKIYC-----FGKDGVKIFK-ICK--KKSIYVENLKQAMLLISKTVKSGDTVLL 411


>gi|251798404|ref|YP_003013135.1| FolC bifunctional protein [Paenibacillus sp. JDR-2]
 gi|247546030|gb|ACT03049.1| FolC bifunctional protein [Paenibacillus sp. JDR-2]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 139/415 (33%), Gaps = 56/415 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP-------------------------- 149
             + + GT+GK S  +++  +  + G                                  
Sbjct: 54  KFIHIAGTNGKGSTCAYLTSVLMKCGYDVGTFTSPYITKFTNRFQYNGQDIDEETLLRLS 113

Query: 150 --TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG 207
               +      +    +P+   ++ AL+ L    VT+        GL   R+D   ++  
Sbjct: 114 NVLKSHVEELAETEFGSPTMFEVSTALAILFYATVTYPDYVVWETGLG-GRMDVTNIVTP 172

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             + +     D+         A       ++    P +   D     EV+KR        
Sbjct: 173 IISVITNVGHDHMDRLGDTLEAVAFEKAGIIKAGVPVVSAVDQPEVVEVVKRTAAEKKST 232

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L     G   ++K++ +  ++Q        +  D L               A + + +  
Sbjct: 233 LY--LLGDQFNIKELSSEEDEQTFRFEGMFRSIDPLTITLNGAHQRTNAAVAVMTLEVLR 290

Query: 328 D------SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-IT 380
                      L    +    PGR E     SR  RI +D AH     E +++ +R+   
Sbjct: 291 QYYALIVEDDALADGLREAKWPGRLE---MVSRSPRILIDGAHNPEGAESLVQALRSTYR 347

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF- 439
             R+ V+     +++      + K  L + D  IVT+ + RS+   ++ A+++  +    
Sbjct: 348 YDRLHVMMAMVENKN---HRDVLKHILPIVDTLIVTEPDFRSKLDAELLADLVRDVKPAE 404

Query: 440 -----IEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNG--EKKMSVDCD 487
                I + +  E +R   ++  + D+ VV G    T++++ +       + D +
Sbjct: 405 SSFELIVEKDWREGLRKLQQLTGETDLGVVTG----TLYLIGDVRSRILYNSDSE 455


>gi|54307599|ref|YP_128619.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
 gi|46912022|emb|CAG18817.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 452

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 110/361 (30%), Gaps = 38/361 (10%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV GT GK++ AS +  I +  G    F +G        +     +    +   
Sbjct: 101 HDRWVLAVAGTHGKTTTASMLAWILEDCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A      
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLKAIQ---- 201

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 L +  P+          E +++  + GC             + K          
Sbjct: 202 -RQFHHLVRTVPSNGRILAPKGVESIQQTLDMGCWSELEFTGDDGHWIAKKQVADGSVFD 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  V NAL+A      +G+   L  E L        R E  G 
Sbjct: 261 VYLDGLMIGTVRWDLVGDHNVNNALMAIAAARHVGVTPDLGCEALATFINTKRRLELKG- 319

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +G ++Y D+AH   ++E+ L  +R       RI+ V     +  +      G IA  L
Sbjct: 320 EVKGVKVYDDFAHHPTAIELTLGGLRAKIGDEQRILAVLEPRSNTMKLGVHK-GDIAPAL 378

Query: 410 --ADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEKGNRIEAIRTAIEMLNKQDVLV 463
             AD   +         PE I     EI        +   N  + +   +  +   D ++
Sbjct: 379 NAADCVFIFQ-------PETIPWSVNEIADACSQPAVTDTNLDKLVAEIVAEVKSGDTIL 431

Query: 464 V 464
           V
Sbjct: 432 V 432


>gi|331090611|ref|ZP_08339462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401051|gb|EGG80646.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 451

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 100/277 (36%), Gaps = 16/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +D  +    +  N+  DH+D H T +AY  AK  + +    ++   + Y
Sbjct: 164 EISSFQLET--VDAFRPKVSAILNITPDHLDRHHTMRAYIEAKETIAKNQTAEDVCVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            +D  +++  ++         S     + ++L+    I+ +     ++   D      L 
Sbjct: 222 -EDEETRKFGEKTEATVLYFSSRRKLDRGVYLEDGTIIYAENGNRTTICHVD---ELKLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     N + A  + +A  +   ++ + ++    V  R E+V   +             +
Sbjct: 278 GVHNYENIMAAVAMSLAYHVPVDIIRQSVKAFGGVEHRIEYVCEKNGVVYYNDSKGTNPD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +  ++     +   + G G D++      +      +  + ++     + E+  K
Sbjct: 338 AAIKAISAMK-----KPTYLIGGGYDKNASYEEWIESFDGKVQKLVLIGQTKEKIEETAK 392

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                  G    +      EA+    E+  + + +++
Sbjct: 393 -----RCGFTDTVLAETLEEAVSICAELSREGEAVLL 424


>gi|251792021|ref|YP_003006741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533408|gb|ACS96654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 438

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 129/395 (32%), Gaps = 54/395 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   +++           + VV +              +  + I+A+TG++GKS+V
Sbjct: 67  LIVISPGLAVKTPEIQTALQAGVEVVGDIE--------LFCREADKPIVAITGSNGKSTV 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ +  GLS    G                   + L      L         +E 
Sbjct: 119 TTLVAEMAKAGGLSVGMGGNIGIP-------------ALSLLNQQHDL-------YVLEL 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +K +A +  N+  DH++ +   Q Y +AK+++++        A+I  +
Sbjct: 159 SSFQLET--TYSLKAMAATVLNVTEDHMNRYVDLQDYRHAKLKIYDN----CQTAVINGE 212

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DA +    +R         +               +   + +    E K       L G 
Sbjct: 213 DALTLPTTQRPQQQVSFAENNADYWLKTDGHHTYLMACNESILTIDEMK-------LSGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  L  A G++ + +   L +   +  RF+          I    A    S 
Sbjct: 266 HNYMNALAAIALAQAAGVNLSGIQTALREFGGLDHRFQLAHMADGVRWINDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++    G++ ++ G  G +      +   I            D           
Sbjct: 326 VAALTGLQ--VKGKLHLLLGGDG-KGADFSELATLINQPHIFCYCFGQDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++    P         +AI      L   D++++
Sbjct: 373 KQLAALSPQSQLFDTMEQAIAAIRLQLQAGDMVLL 407


>gi|332521390|ref|ZP_08397846.1| FolC bifunctional protein [Lacinutrix algicola 5H-3-7-4]
 gi|332043118|gb|EGI79316.1| FolC bifunctional protein [Lacinutrix algicola 5H-3-7-4]
          Length = 405

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 3/121 (2%)

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
                      ++  D AH    L   +  ++      + +VFG   D+D      +  I
Sbjct: 279 LGRWQILQSNPKVICDTAHNFEGLNFTINQLKKENFENLHIVFGVVNDKDLS---SISTI 335

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
               A       + PR    +K+++ ++          +  EA ++A+     +D++ + 
Sbjct: 336 LPKNAKYYFCKPNIPRGMSEKKLKSILLQSNLVGESYSSVNEAYKSALSTAKAEDIIYIG 395

Query: 466 G 466
           G
Sbjct: 396 G 396


>gi|293395137|ref|ZP_06639423.1| dihydrofolate:folylpolyglutamate synthetase [Serratia odorifera DSM
           4582]
 gi|291422314|gb|EFE95557.1| dihydrofolate:folylpolyglutamate synthetase [Serratia odorifera DSM
           4582]
          Length = 421

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 59/195 (30%), Gaps = 17/195 (8%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                  + + +        G       P P       A   A L  +        +   
Sbjct: 221 YRRGDDWSFNEQGDRWQWQSGGTLLTDLPTPNVPLPNAATALAALHYSALEIDERAIFTG 280

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDR 394
            +   +PGRF+ V        + +D AH  +              + G++  V G   D+
Sbjct: 281 LQQATLPGRFQVVQQQPL---LILDVAHNPHAAGYLAGRLAALPRSGGKVRAVVGMLSDK 337

Query: 395 DQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           D       G +A   D  D       D PR    E +   +           +   A R 
Sbjct: 338 DIA-----GTLACLRDQVDEWYCAPLDGPRGASVELLAQHLAE----PRCFADVETAWRQ 388

Query: 452 AIEMLNKQDVLVVAG 466
           A++  + QD+++V G
Sbjct: 389 AMQDADIQDIVIVCG 403


>gi|258539939|ref|YP_003174438.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus Lc
           705]
 gi|257151615|emb|CAR90587.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus Lc
           705]
          Length = 436

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 78/246 (31%), Gaps = 13/246 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY+   +  ++A      ++       + + DD + +++  + 
Sbjct: 162 AYHPDYMIMTNIDFDHPDYYHGFEDVYDAFETEANQVQKA---IVAWGDDPWLRKLKAKV 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              +               +     F  PL GE  V NAL    
Sbjct: 219 PVYYYGTSDRDDFQTRNVKRDTKGSSFDAYF---HDELIGHFFVPLFGEHSVLNALAVVA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D+ L+   L     V  RF     + +   I  DYAH  N ++  L   R   
Sbjct: 276 VAHMEKLDAGLIARELGNFSGVKRRF--AEKDLKDMIIVDDYAHHPNEIKATLDAARQKY 333

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-AEIIHGI 436
             + I+         R Q   P   ++    AD   +T   +   E   KIR  +I+  I
Sbjct: 334 PDKAIIAVFQPHTYSRTQAYEPQYVQVLSQ-ADQTFLTPIFSSAREKNGKIRSEDIVAQI 392

Query: 437 PGFIEK 442
            G    
Sbjct: 393 KGAAVI 398


>gi|145633553|ref|ZP_01789281.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae 3655]
 gi|229845733|ref|ZP_04465854.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 6P18H1]
 gi|144985759|gb|EDJ92373.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae 3655]
 gi|229811346|gb|EEP47054.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 6P18H1]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 75/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHAGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|313124202|ref|YP_004034461.1| UDP-N-acetylmuramate--l-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280765|gb|ADQ61484.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 439

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 80/275 (29%), Gaps = 22/275 (8%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + +  Y +A      +                 + + K  
Sbjct: 165 AYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAAAQTKKGLFVWG------DDERLQKIQ 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                +               V       +  +   G+D  +F   L G+  V NA    
Sbjct: 219 PKTAKKYTYGLKDSDDFQAFDVVKTTEGAKFHVRANGEDLGEFSIHLFGDHNVMNATAVI 278

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
            +    GID  +V + L K      RF           +  DYAH    L   ++  R  
Sbjct: 279 AIAFTEGIDLDVVRKGLVKYTGAKRRFSEKDFG--DTVVIDDYAHHPTELRATIQAARQK 336

Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHG 435
               +++ +F      R +       +I     D A +T       E    I   +I   
Sbjct: 337 FPDRKLVTIFQPHTYSRTKEFEEEYVEIL-KGVDKAFLTPIYGSAREAAGDIKSEDITSQ 395

Query: 436 IPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           IPG       N  +       +  K D +V  G G
Sbjct: 396 IPGAEVIDFDNLKD------LLAYKGDCIVFMGAG 424


>gi|312880217|ref|ZP_07740017.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
 gi|310783508|gb|EFQ23906.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
          Length = 485

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 124/392 (31%), Gaps = 45/392 (11%)

Query: 93  LVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
           + V    + LS   +R  G      + V GT GK++ +S +  I + +G+S         
Sbjct: 98  IPVARRAEVLSDLFNRRRG------IGVAGTHGKTTTSSMIALIAENAGISPTVA-LGGE 150

Query: 153 ISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
           +     + +L +                      ++ S    +              TN+
Sbjct: 151 LCDIGCNAKLGSGE---------------TMVAELDESDGSFEL-----FSPEIAVVTNI 190

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR----VL 268
             DH+D++ T ++  +A    F          ++ A+DA ++ + +R H  G        
Sbjct: 191 DWDHVDHYPTYESVGDA-FHRFALGKKPAGSLVLCAEDAGTRRLAERLHEDGLASETLYT 249

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIG 326
                        V  +       +              + GE  V NAL A   C  +G
Sbjct: 250 YGWGTSWTWGATDVTPLPGGGIRCLVHFRGTPLGTLSLRVSGEHNVLNALAACAACSIVG 309

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           I   +    L        R + VG    G  +Y DY H    +   L+ +R     R ++
Sbjct: 310 IPFEVSCRALSTFKGAKRRLQRVGAAE-GVEVYDDYGHHPREIHATLRALRGAFPHRRLL 368

Query: 387 VFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEI--IHGIP 437
           V        R          +    AD  ++       E P       + AE     G  
Sbjct: 369 VLFQPHRFTRTAAMFREFATVLT-GADRVLLLPVYGADETPIPGVGSHLIAEAFPKEGPT 427

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                G+  EA+   +     QDV++  G G+
Sbjct: 428 RLDLCGSFSEAVEVVLRERRDQDVVLTVGAGN 459


>gi|83941838|ref|ZP_00954300.1| folC bifunctional protein [Sulfitobacter sp. EE-36]
 gi|83847658|gb|EAP85533.1| folC bifunctional protein [Sulfitobacter sp. EE-36]
          Length = 424

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 50/390 (12%), Positives = 109/390 (27%), Gaps = 31/390 (7%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           + L+   +      P  ++ + GT+GK S  + ++   +  G                + 
Sbjct: 30  RLLNALGNPQNDLPP--VIHIAGTNGKGSTQAMIRAGLEADGHRVHAYTSPHLARFHERI 87

Query: 160 N---RLTTPSPIY--LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-------IAG 207
                L + + +   L +  +  + + +T+  +   +  L   R                
Sbjct: 88  RLAGELISEAALTEMLDECYAANNGESITYFEITTCAALLAFARTPADYTLLEVGLGGRL 147

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+         T  +  + +             A I           ++        
Sbjct: 148 DATNVIDQPALTVITPVSIDHQQFLGTTLPEIAGEKAGIIKRRVPCIVGPQQDAALEVIE 207

Query: 268 LSVGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
                    +              ++    +    D   P        +   AA   +  
Sbjct: 208 TQAARHHAPVFAYGQQWHVAPEAGRMVFQDDTGLLDLPKPNLLGAHQISNAGAALAALRQ 267

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNS-----RGGRIYVDYAHTSNSLEMILKNIRTIT 380
              SA   E        P R + +             +++D  H   + + I   +  + 
Sbjct: 268 LGASAQACEAAVTRAEWPARMQRLRHGPLIDAAPQAELWLDGGHNPAAGDAIAAVLEDMP 327

Query: 381 SGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDN--PRSEDPEKIRAEIIHGI 436
           +    ++ G    +D G   RP+ G  A  L  ++I  +    P +E     RA I  G+
Sbjct: 328 ARPTFLICGMLNTKDIGGYLRPLAGH-AEQLFAVSIPGEAATLPATETA---RAAIDVGL 383

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               E     EA+ T +        +++ G
Sbjct: 384 T-AQEAPGVAEALATIVAKA-PHARVLICG 411


>gi|325684170|gb|EGD26356.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 439

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 82/275 (29%), Gaps = 22/275 (8%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + +  Y +A     ++                 + + K  
Sbjct: 165 AYHPDYQIMTNVDFDHPDYFKDRDDYASAFQTAADQTKKGLFVWG------DDERLQKIQ 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                +               V       +  +  +GKD  +F   L G+  V NA    
Sbjct: 219 PKTAKKYTYGLKDSDDFQAFDVVKTTEGAKFHVRAQGKDLGEFTIHLFGDHNVMNATAVI 278

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT- 378
            +    GID  +V + L K      RF           +  DYAH    L   ++  R  
Sbjct: 279 AIAFTEGIDLDVVRKGLVKYTGAKRRFSEKDFG--DTVVIDDYAHHPTELRATIQAARQK 336

Query: 379 ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHG 435
               +++ +F      R +       +I     D A +T       E    I   +I   
Sbjct: 337 FPDRKLVTIFQPHTYSRTKEFEEEYVEIL-KGVDKAFLTPIYGSAREVAGDIKSEDITSQ 395

Query: 436 IPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAGKG 468
           IPG       N  +       +  K D +V  G G
Sbjct: 396 IPGAEVIDFDNLKD------LLAYKGDCIVFMGAG 424


>gi|291544049|emb|CBL17158.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. 18P13]
          Length = 471

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 124/420 (29%), Gaps = 52/420 (12%)

Query: 66  QGAEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
            GA+ IV ++A      +  A   S  P+L      + L +  S+       N + + GT
Sbjct: 67  AGADLIVHTAAIMADNPELIAAKASGVPVLERS---ELLGIVTSKYD-----NAICICGT 118

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S   QI   +G+          +       R               +  +   
Sbjct: 119 HGKTTTTSMAAQILFTAGVDLSAF-IGGKLPCIGGSGRAGKSDI---------MVCESCE 168

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
            V                +        N+  DH+DY  T +    +            + 
Sbjct: 169 FVDTFL-----------KLYPDVAVILNVDADHLDYFGTLENVIKS--FHKFAEKASRTV 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
                D    K V   +        +      +    +  +      + +  +    + +
Sbjct: 216 IYNGNDSNTRKAVEGISGKEMITFGNTPDCDYYAAQVQHVSGMETHFIAMHHDKPMGEIV 275

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             + G   V NA+ A       G+    + + L +      RFE V     G  +  DYA
Sbjct: 276 LHVAGIHNVLNAMAAIAAADHAGVPFDAIQKGLCEFRGAGRRFEKVAQ-VGGITVVDDYA 334

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDD-NPR 421
           H    L + L   + +    +  VF      R         K AL +AD A++TD    R
Sbjct: 335 HHPAELTVTLNAAKEMGYRHVWAVFQPFTFSRTAMLLDDFAK-ALSIADTAVLTDIMGSR 393

Query: 422 SEDPEKI----RAEIIHGI-----------PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            ++   I     AE I G                +  N  +      +     D+++  G
Sbjct: 394 EKNTYHIFTRNLAEKIPGCVWFPQDETEEPNDTRKYHNFDQVCDYICKHAQPGDLVITLG 453


>gi|291514696|emb|CBK63906.1| folylpolyglutamate synthase/dihydrofolate synthase [Alistipes
           shahii WAL 8301]
          Length = 429

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 118/389 (30%), Gaps = 35/389 (8%)

Query: 108 RLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ------- 158
           R  G    N   + V GT+GK SVA  +  + Q++G  +             +       
Sbjct: 37  RHIGNPQRNFFTIHVAGTNGKGSVAHIIASVLQQAGYRTGLFTSPHLQDFRERIRVDGEM 96

Query: 159 ----------DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLI 205
                     D        + L+      +         +     ++     RLD   +I
Sbjct: 97  IPKQKVVNFVDKHHDKMVELELSFFEMTAAMAFDYFAQSDVEVAVIETGLGGRLDATNII 156

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               + +    +++                 ++ K  P II   DA    V+++A  A  
Sbjct: 157 VPILSVITNIGLEHTSLLGDTLPKIAAEKAGIIKKSIPVIIGEADARYNGVIEQAAAANK 216

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
             +    Q        +       ++  S +G+ FD    L G +Q  N + A+     +
Sbjct: 217 SRVIYAEQEFSCEEHHMKGTGQSFRLHRSRDGRAFDVSLDLQGNYQSRNIVTASAAVDFL 276

Query: 326 G------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                  I     LE +              T +       D  H ++ +  +   ++  
Sbjct: 277 HEETPLTISRRAYLEGMRCAAANTALMGRWQTLAESPLTVCDTGHNAHGIAYVADQLKAT 336

Query: 380 TSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHGIP 437
               +  V G   D+D     P++ + A       I T  +  R+    ++ A+      
Sbjct: 337 PHRELYCVIGFVRDKDLAHILPLLPRDA-----HYIFTQAHSERALPAAELTAKAAIYGL 391

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                     A+  A E+   +D++ + G
Sbjct: 392 RGEAVEEVTAAVARAKELAAPEDMIFIGG 420


>gi|288937140|ref|YP_003441199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|290512563|ref|ZP_06551929.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
 gi|288891849|gb|ADC60167.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|289774904|gb|EFD82906.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
          Length = 438

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 139/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIE--------LFCREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDTDREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG          +     +  + +  E        PL 
Sbjct: 213 ADDALTMPVRGADDRCISFGVDVGDYH-------LNRQQGETWLRVKGEKVLNVKEMPLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVLDHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  ++    G + ++ G  G   D    KR + G       D   +        +
Sbjct: 326 STEAALNGLQL--DGTLYLLLGGDGKSADFTPLKRYLGG-------DRIRLYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R ++       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPDV------AVQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|262374698|ref|ZP_06067970.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter junii SH205]
 gi|262310354|gb|EEY91446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter junii SH205]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 84/282 (29%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A       L   +  +        +
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITE 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               + + +       R          +  + + A  +  +  +       +  + + G+
Sbjct: 224 TNIDEVLAQGCWTPVVRTSLEPNDQAALSAELISADGSHFK-VLENGKAIGEVKWNMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G   RG  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSLEQACEALSNFGGVKRRMELLG-TVRGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           E  L   R  +   ++  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 ETTLDGARKRLGERKLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  + I   +    + D +V+
Sbjct: 395 LDW-DLQPVISASSNKAEVSRSLDDIIARVVNEAGEGDAVVI 435


>gi|218695914|ref|YP_002403581.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 55989]
 gi|218352646|emb|CAU98427.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli 55989]
          Length = 422

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +G ++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGHVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|15639332|ref|NP_218781.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025574|ref|YP_001933346.1| UDP-N-acetylmuramate--L-alanine ligase [Treponema pallidum subsp.
           pallidum SS14]
 gi|6093444|sp|O83361|MURC_TREPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620436|sp|B2S2T8|MURC_TREPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3322616|gb|AAC65326.1| UDP-N-acetylmuramate--alanine ligase (murC) [Treponema pallidum
           subsp. pallidum str. Nichols]
 gi|189018149|gb|ACD70767.1| UDP-N-acetylmuramate--alanine ligase [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059731|gb|ADD72466.1| UDP-N-acetylmuramate--alanine ligase [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 481

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 66/425 (15%), Positives = 133/425 (31%), Gaps = 62/425 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++ S+AY  ++      +    +      + L   +   +         + G  GK++ 
Sbjct: 76  VVIHSAAYVPEENDELAEAYRRGIPTLTYPEALGDISCARFS------CGIAGVHGKTTT 129

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + + Q+ +   L +  +  ++   +      L      ++A+   Y       H     
Sbjct: 130 TAMIAQMVKELRLDASVLVGSAVSGNNDSCVVLN-GDTFFIAETCEYRRHFLHFH----- 183

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               T++  DH DY+ + +    A     +  LP+        D
Sbjct: 184 --------------PQKIVLTSVEHDHQDYYSSYEDILAAYFHYIDR-LPQFGELFYCVD 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ---VTISVEGKDFDFLFPL 306
           D   +EV++ A  +   ++ V Y  +      V     + +    ++     +F    P 
Sbjct: 229 DQGVREVVQLAFFSRPDLVYVPYGERAWGDYGVSIHGVQDRKISFSLRGFAGEFYVALPG 288

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK-------LHVVPGRFEFVGTNSRGGRIY 359
                     +A  L +       + +EHL               R E +G   RG    
Sbjct: 289 EHSVLNATGALALALSLVKKQYGEVTVEHLTALRKVLALFQGCRRRSEVLG-EVRGILFM 347

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H   +++  L+ ++T    R IVV        +    ++ + A     AD+ I+  
Sbjct: 348 DDYGHHPTAIKKTLRGLKTFFPERRIVVDFMSHTYSRTA-ALLTEFAESFQDADVVIL-- 404

Query: 418 DNPRSEDPEKIRAEIIHGIPG---FIEKGNRI-------EAIRTAI----EMLNKQDVLV 463
                 +      E+  G        E   R        EA+  A+      L + D+ V
Sbjct: 405 -----HEIYASAREVYQGEVNGEHLFELTKRKHRRVYYYEAVMQAVPFLQAELKEGDLFV 459

Query: 464 VAGKG 468
             G G
Sbjct: 460 TLGAG 464


>gi|157155272|ref|YP_001463659.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli E24377A]
 gi|157077302|gb|ABV17010.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E24377A]
          Length = 422

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +G ++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGHVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A   A+ 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAAMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|251793118|ref|YP_003007844.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter aphrophilus NJ8700]
 gi|247534511|gb|ACS97757.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter aphrophilus NJ8700]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 65/215 (30%), Gaps = 15/215 (6%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +++    G                +       +        K  +  + + GE  + N L
Sbjct: 229 VEQTLAMGYWSECQYVGKDQEWYAERITHDCTEFSVFHKGEKVAEVHWNIVGEHNMRNGL 288

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
           +A       G+      E L        R E  G N     +Y D+AH    +   L  +
Sbjct: 289 MAIAAAHHAGVSIQKACEALGSFINAKRRLEVKG-NLHDITVYDDFAHHPTEIRATLTAL 347

Query: 377 RTIT--SGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RA 430
           R     + RI+ V     +  + G        AL+ AD+  +         PE I    A
Sbjct: 348 RDKVGANARILAVLEPRSNTMKMGVHKDEIAPALEKADVVFLFQ-------PETIPWKVA 400

Query: 431 EIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
           +I   +       + + A +          D ++V
Sbjct: 401 DIADALTQPAAHSDDLAALVNMIATEAKPTDHILV 435


>gi|110677730|ref|YP_680737.1| folC bifunctional protein [Roseobacter denitrificans OCh 114]
 gi|109453846|gb|ABG30051.1| folC bifunctional protein [Roseobacter denitrificans OCh 114]
          Length = 424

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 51/409 (12%), Positives = 110/409 (26%), Gaps = 39/409 (9%)

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +      L +D   + L    +      P  ++ + GT+GK S  + ++   + +G S 
Sbjct: 15  ALHPKVIDLTLDRVWRLLDALGNPQRNLPP--VIHIAGTNGKGSTQAMIRAGLEAAGKSV 72

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIY-------LAKALSYLSSQGVTHVSVEASSHGLDQH 197
                TS   +   +        I        L +  +      +T+  +   +  L   
Sbjct: 73  HAY--TSPHLARFHERIRVAGDLISEADLTAVLDECYAANGGGDITYFEITTCAALLAFS 130

Query: 198 RLDGIKL-------IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           R                  TN+  D +    T  +  + +             A I    
Sbjct: 131 RTPADFTLLEVGLGGRLDATNVVDDPVLTMITPVSMDHEQFLGDTLRKIAFEKAGIIKPG 190

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                  +                  +            +  IS +        P+P   
Sbjct: 191 VPCIVSRQADDGMEVIEEVAQRHAAPLLAYGQQWHVGPDRDRISYQDDAGLLDLPMPNLP 250

Query: 311 QVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----RGGRIYVDYA 363
             +  +   AA   +        V E        P R + + T           +++D  
Sbjct: 251 GAHQIMNAGAALTALRYLGFDEHVAEAAVTTAFWPARMQRLKTGPLTDAAPQAELWLDGG 310

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPR 421
           H   + E +  ++ ++      ++ G    +D     RP+    A    D+  V+     
Sbjct: 311 HNPAAGEALAAHLHSLPERPTHLICGMLNTKDIDGYLRPL----AAVTQDLTAVSIPGEA 366

Query: 422 SEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIE---MLNKQDVLVVAG 466
           S  P +  AE    +        +   A+   +           +++ G
Sbjct: 367 STLPAEATAEAARNVGFSADVADDVGAALAKIVATTPQAR----VLICG 411


>gi|299066414|emb|CBJ37599.1| folylpolyglutamate synthase [Ralstonia solanacearum CMR15]
          Length = 432

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 14/132 (10%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPI 401
           PGRF+ +        + +D AH  ++   + +N+  +   R    VFG   D+D     +
Sbjct: 290 PGRFQVMPGRPA---VILDVAHNPHAAAALGQNLENMGFFRYTYAVFGAMQDKDIAG--V 344

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGIP-----GFIEKGNRIEAIRTAIE 454
           +G +     D   +TD   PR+    ++   +   G            G+   A R A+E
Sbjct: 345 LGHLIDK-VDHWCLTDLPTPRAASAAQLEQALADAGFSPGKEASVATYGDPATAYRNAME 403

Query: 455 MLNKQDVLVVAG 466
              + D +VV G
Sbjct: 404 RATEDDRIVVFG 415


>gi|149183844|ref|ZP_01862239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           SG-1]
 gi|148848443|gb|EDL62698.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           SG-1]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 92/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++  +     FTNL   H+DYH + + Y  AK  +       +   I 
Sbjct: 166 IELSSFQL--MGIEEFRPKISIFTNLYEAHLDYHGSIEDYAKAKANITANQTKDDYLVI- 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
              +A   E+ +    +  + +    +        +            +E         L
Sbjct: 223 ---NADQPELAELLSFSKAQKIYFSTRRPLEKGASIKDGAIYYDDDKIMETSLI----AL 275

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + N L A       G+ +  + E L+    V  R +FV T +         A   
Sbjct: 276 PGKHNLENILCAVIAAKLSGVSNEAIQEVLKTFTGVKHRTQFVRTLNGRSFYNDSKATNV 335

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + +  L+           ++   G DR      ++  +    A   ++T      E   
Sbjct: 336 LAAKSALEAFDQ-----PTILLAGGLDRGNSFDELIPYLKNVKA---LIT----FGETAV 383

Query: 427 KIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K        GI       N   A+  A E+  + DV+++
Sbjct: 384 KFLETAAKAGIQTVKRVDNVEAAVPAAYEISEEGDVILL 422


>gi|327314098|ref|YP_004329535.1| bifunctional protein FolC [Prevotella denticola F0289]
 gi|326945252|gb|AEA21137.1| bifunctional protein FolC [Prevotella denticola F0289]
          Length = 428

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 5/152 (3%)

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                    +  ++  +      +    G             +  D  H +   + + + 
Sbjct: 268 AAMLLYNKGVIRNTDSIARGFADVCETTGLMGRWQKLQDHPLVICDTGHNAGGWQYLSRQ 327

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           IR        +VFG   D+D      M             T  + R   P +  A    G
Sbjct: 328 IRHQPCRCRRIVFGMVDDKDLHAVMSMLPDDAAY----YWTQPSTRRAFPAEKVAATAAG 383

Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       EA R A    +K D + V G
Sbjct: 384 YGLHGETFPTVPEAYRAAFHAADKDDFIFVGG 415


>gi|319778486|ref|YP_004129399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
 gi|317108510|gb|ADU91256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
          Length = 478

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 120/359 (33%), Gaps = 37/359 (10%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 I+ +TGT+GK++V S V+ +C+ +GL S + G               +PS + +
Sbjct: 117 NSKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGNI-------------SPSALTV 163

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                   +     +S+E SS  L     D I L A +  N+ +DHID+H + +AY  +K
Sbjct: 164 VCEF-EEKNSWPDVISLELSSAQLFY--TDYICLDASTILNITQDHIDWHGSMEAYIASK 220

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                           ++  A   E   +       ++             +  ++  + 
Sbjct: 221 K-----------KIFSHSKIAVVDENQFKEFGLSNALVYRDSLPINKEDIGIKEVNGMKW 269

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
              + +         + G   V NA+ A  LC AI +    +L  L        R  +V 
Sbjct: 270 FCTTDKNLMPVEAMKIRGNHNVLNAMAAMQLCRAIDLPFEPLLTALRDYEAHNHRCTYVR 329

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD-- 408
                  I         +    +         R +VV   G  + Q   P+   +     
Sbjct: 330 DIQGVNFIDDSKGTNVGATVAAID-----GMYRNLVVILGGEGKGQDFTPLYESLRNRTK 384

Query: 409 ---LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              L  I ++  D         I+          +      EA+  + ++    D++++
Sbjct: 385 SNGLKGIVLIGKDKNILSHYLNIKDFKFEETIPVVVVNTIDEAVVESFKLAQSGDLVLL 443


>gi|307718045|ref|YP_003873577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
 gi|306531770|gb|ADN01304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Spirochaeta
           thermophila DSM 6192]
          Length = 459

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 117/377 (31%), Gaps = 39/377 (10%)

Query: 95  VDNTRKFLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI 147
           V  T +FLS  A                 ILAVTG+ GKS+ AS +  I   +   +   
Sbjct: 86  VPRTSRFLS-LARHVETDISLFLKACRSPILAVTGSKGKSTTASALHHILSAAFPGARLG 144

Query: 148 GPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLIA 206
           G               T SP+   + LS  S      V +E SS  L D           
Sbjct: 145 GNI-------------TTSPLTFLRELSEESP-----VVLELSSWQLGDLGGRISFTPQV 186

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
            + TN+  DH + + + +AY   K  +     P ++  +  A D + + +          
Sbjct: 187 AALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQTF-LYPASDPWGRWMAANTPATALP 245

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                          +             E         +PG     N L+A  +    G
Sbjct: 246 FFEERPTSPPPRAAFLTEQEGLFL-DHGKEIPLLPERLLVPGAHNRLNLLLAGAMAYTFG 304

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D AL+   L     +P R E V             A   +++   +           + 
Sbjct: 305 TDPALIRTRLSSFPGIPHRLELVREKGGVSFYNDSAATIPDAVLAAVSAFE-----CPVH 359

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
           +   G D++    P  G   +    + I   +   +     +  E   GIP      +  
Sbjct: 360 LITGGTDKNLDLSPYRGLAGMP---VTIYLLEGSATRRLIPLLHE--SGIPYLGPYRSLE 414

Query: 447 EAIRTAIEMLNKQDVLV 463
           EA+  A    +  +V++
Sbjct: 415 EALAEAHHRASSGEVVL 431


>gi|262371193|ref|ZP_06064514.1| hypothetical protein HMPREF0016_02984 [Acinetobacter johnsonii
           SH046]
 gi|262313923|gb|EEY94969.1| hypothetical protein HMPREF0016_02984 [Acinetobacter johnsonii
           SH046]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 89/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           ++   EV+++         S+  Q K     +  +        +          + + G+
Sbjct: 223 ESNIDEVLEQGCWTPVVRTSLEAQDKSELYAEQLSADGSHFKVLQHGVVKGTVQWNMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G   RG  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAEHVGVSIETACEALSNFGGVKRRMELLG-TVRGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L+  R  +   ++  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLEGARKRLGERKLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I       +      + I T +    + D +V+
Sbjct: 395 LDW-DLQPVIAAAPNKAVVARTLDDIIHTIVSDAGEGDAVVI 435


>gi|225011614|ref|ZP_03702052.1| UDP-N-acetylmuramate/alanine ligase [Flavobacteria bacterium
           MS024-2A]
 gi|225004117|gb|EEG42089.1| UDP-N-acetylmuramate/alanine ligase [Flavobacteria bacterium
           MS024-2A]
          Length = 445

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 68/227 (29%), Gaps = 21/227 (9%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G  T++  DH+D +QT++ +  A ++   ++      A       ++  V     
Sbjct: 177 LYPSIGCITSMDPDHLDIYQTKEEFEAAFIQFSSQIEQNRIVAYGIPIHGFTYGV----- 231

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL-FPLPGEFQVYNALVAAG 320
                           +   V          +      +  + F   G+  + NA+ A  
Sbjct: 232 ----------DVPADYNAFNVRNTKKGYFFDLKTPKGVYQDILFNQLGKHNIANAICAIA 281

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +    G+    VL+ L     V  R            +  DYAH    +  +L+ ++   
Sbjct: 282 MADQAGVPLDAVLKTLYTFPGVYRRMNV--FEWGKAIVVDDYAHHPTEIRKVLETLKGSF 339

Query: 381 SGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             +   V        R Q        +     D   + +  P  E P
Sbjct: 340 PNQKNCVIFQPHLFSRTQDFMKDFLSVLAAF-DEVFLLEIYPAREAP 385


>gi|218249332|ref|YP_002375315.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226321282|ref|ZP_03796810.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
 gi|218164520|gb|ACK74581.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226233314|gb|EEH32065.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
          Length = 468

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 131/417 (31%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+       + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +  ++  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIAGISNIFIVETCEYKNHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A    +   L K    II 
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEA-FLQYINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +DD    ++ ++ +     + S G              +           ++VE K   F
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSEYFCFSFLGLLNVELKTVLF 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L     +    +          D    ++ + K +    R   V     G     DY
Sbjct: 286 HNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIV----- 415
           AH    ++  L  I+     + I++        R +       ++  D ADI I+     
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSD-ADILILHNIYL 404

Query: 416 ---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|224282639|ref|ZP_03645961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313139797|ref|ZP_07801990.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132307|gb|EFR49924.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 476

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 115/378 (30%), Gaps = 59/378 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +    GL +  +G      S A  +       + L   
Sbjct: 100 PAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVGNIGKAVSHAAVDPDNDALCVEL--- 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS  L  H  D + L   + TN+  DH+D+H   +    A    
Sbjct: 157 ----------------SSFQL--HFTDSLALDCAAITNIADDHLDWHGGIE----AYAAD 194

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT- 292
             ++      A+++  D      +  A +       +G+     H  ++           
Sbjct: 195 KSKVFRNVRRALVFNADDRRVSALASAAHTAEGCRRIGFTLGVPHPGQIGVDDGWIVDRS 254

Query: 293 --------------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                            E               + +A+ A  L + +G+D    L  L+ 
Sbjct: 255 GVAGGAFGDETRLAPVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKA 314

Query: 339 LHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
                 R + V T + G       I    A  +++    L +       + +V    G  
Sbjct: 315 FAPGGHRIQTVATAATGDGGSIRFIDDSKATNAHAARASLSSFAP----KSVVWIAGGLA 370

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KIRAEIIHGIPGFIEKGN-----RIE 447
           +      ++   A  +    I+  D    + P  +  A    GIP  + +          
Sbjct: 371 KGSRFEQLVADQAHTIKAAVIIGKD----QKPMLEAFAASAPGIPLTVIEPEPSDTVMAR 426

Query: 448 AIRTAIEMLNKQDVLVVA 465
           A+  A       DV+++A
Sbjct: 427 AVDAAGAYAGTGDVVLMA 444


>gi|307250719|ref|ZP_07532654.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857257|gb|EFM89378.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 439

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 82/281 (29%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 152 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSSGCILSAAA 210

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 211 DENVQNTLKMGSYSELQF----IGEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGA 266

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G    G  +Y D+AH   ++
Sbjct: 267 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAI 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  LAD     V   +    
Sbjct: 326 AATIDALRGKVGKEQRILAVLEPRSNTMK---MGVHKEEIAPSLADANAVFVYQPDTIPW 382

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 383 AVSVITDNLTQPAKWS---ADLDELVKMIVEEAKPTDHILV 420


>gi|221217628|ref|ZP_03589097.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224533430|ref|ZP_03674023.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225550260|ref|ZP_03771219.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226320864|ref|ZP_03796416.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
 gi|221192574|gb|EEE18792.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224513392|gb|EEF83750.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225369128|gb|EEG98582.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226233730|gb|EEH32459.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
          Length = 468

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 119/417 (28%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+       + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +  ++  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAMAGISNIFIVETCEYKNHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A +R    L       I  
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEAFLRYINNLKKNGILIINS 226

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI-----SVEGKDFDF 302
            D+   K   +                    +  +         +               
Sbjct: 227 DDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSEYFCFSFLGLLNVELKTVLFH 286

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                    +   L       +I      +    +    +  R E V   + G     DY
Sbjct: 287 NVLNFSAALLALNLFLESNGKSIFDFKEAIKRIAKNYSGIKRRVEVVKEEN-GVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIV----- 415
           AH    ++  L  I+     + I++        R +       ++  D ADI I+     
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSD-ADILILHNIYL 404

Query: 416 ---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|224532035|ref|ZP_03672667.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           valaisiana VS116]
 gi|224511500|gb|EEF81906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           valaisiana VS116]
          Length = 451

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 124/431 (28%), Gaps = 69/431 (16%)

Query: 64  IAQGAEAIVVSSAYSLQ-----DFSATIRSNTPI--------------LVVDNT----RK 100
           +  GA+ ++       +     D                         +VV N       
Sbjct: 30  LKHGAKVVITDLKSEAELALSIDSLKDFDDQIRYVLGKHDADDFKRADIVVKNPSVKPNN 89

Query: 101 FLSLFASR-------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
                A R           +   I+AVTGT GKS++AS + Q+ ++    +   G     
Sbjct: 90  EYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLASLLYQVLKKKYPRAKLGGNIGVS 149

Query: 154 SSFAQDNRLT-TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNL 212
                D     +P  + L                   SS  L    L+    I    TN+
Sbjct: 150 PLSFFDQLDGRSPLILEL-------------------SSWQLQS--LENFNPILSIVTNI 188

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH +Y+     Y   K ++F             A   Y  +   +A        +   
Sbjct: 189 YNDHQNYYLNFDDYIIDKSKIFVNQTSGIVIIQDKAYYKYFSKFESKAKVILFSEFNPCD 248

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
               +       ++   ++  S       F+ P    F V   L          I    V
Sbjct: 249 FDLDVFYCNKGKVYFNNKLIGSFSESQVVFMIPKLITFFVSYYL---------NIGFNHV 299

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            + L     +  R EFV             +   +S  + +K+++T  +   ++V G   
Sbjct: 300 FQILNNFKGIEHRLEFVKLIQNVMFYNDTASTIPDSTVLSVKSLKTNDNHINLIVGGTDK 359

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           + D      +             T    +     KI   +      +    +  +++  A
Sbjct: 360 ELDFSSFSKIINCVK--------TWILIKGSATVKIIKILEKSSIQYFVFDSLKDSVNHA 411

Query: 453 IEMLNKQDVLV 463
           +++ +  D+++
Sbjct: 412 LKVSSPGDIVL 422


>gi|158320410|ref|YP_001512917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
 gi|167017286|sp|A8MH34|MURD_ALKOO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158140609|gb|ABW18921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
          Length = 454

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 101/298 (33%), Gaps = 18/298 (6%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I +A     L +     + +EASS  L+   +   +   G+  NL  DH++ H+T + Y 
Sbjct: 145 IGVAFISKALETTADDVIVIEASSFQLES--IVDFRPQVGAILNLTPDHLNRHKTMENYQ 202

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
            AK  +F+    ++   I Y       ++ + +     + +    +        V     
Sbjct: 203 KAKFNIFKNQGAEDIAVINY----DDVKLREESKQIYAKKVYFSRRTLLEEGVFVEDGKI 258

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
                   +         +PG   + NAL A  + +++G+D  ++   L+    V  R E
Sbjct: 259 VALKDGHKKEIISKDDIFIPGNHNLENALAATAMTLSLGVDIDVIQHTLKTFKGVEHRTE 318

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V        I        ++    ++ I        I++   G D+       +     
Sbjct: 319 IVDVIHGVRFINDSKGTNPDASIKGIEGI-----NTPILLIAGGYDKGSDFDEFINAFDG 373

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +  + +        E    +             +  N  EA++ A ++  + D +++
Sbjct: 374 KVKHMFVY------GETANTLMETAKKLNFIDVTKVQNLDEAVKKAYDIAIQGDTVLL 425


>gi|169634924|ref|YP_001708660.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii SDF]
 gi|169153716|emb|CAP02917.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 87/282 (30%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNVIGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G    G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLG-TVNGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVI 435


>gi|157371568|ref|YP_001479557.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Serratia proteamaculans 568]
 gi|157323332|gb|ABV42429.1| FolC bifunctional protein [Serratia proteamaculans 568]
          Length = 420

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 17/195 (8%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                  +   + +      G       P+P       A   A L  +        +   
Sbjct: 221 YRRGDAWSFSEQGERWQWQGGGTLLTDLPMPNVPLANAATALAALHFSALEIDERAIFTG 280

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDR 394
            +   +PGRF+ V        + +D AH  +                G++  V G   D+
Sbjct: 281 LQQATLPGRFQIVRR---DPMLILDVAHNPHAAGYLAGRLATLPRNGGKVRAVVGMLSDK 337

Query: 395 DQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
           D       G +A   +  D       D PR    E +       +    +  +   A R 
Sbjct: 338 DIA-----GTLACLSEQVDEWYCAPLDGPRGASVELLA----QYLTEPRQFADVETAWRQ 388

Query: 452 AIEMLNKQDVLVVAG 466
           A++  + QD+++V G
Sbjct: 389 AMQDADIQDIVIVCG 403


>gi|289617729|emb|CBI61452.1| unnamed protein product [Sordaria macrospora]
          Length = 411

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 106/389 (27%), Gaps = 27/389 (6%)

Query: 102 LSLFASRLYGKHP-ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           L+     L         + V GT+GK S+ +++  +   SG+S  +      I  +    
Sbjct: 6   LARIGHLLRHTPQTWKAIHVAGTNGKGSICAYLSAMLNASGVSCARFTSPHLIDRWDCIT 65

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
               P P  + + +  L  Q      + A+   L       I         +    +   
Sbjct: 66  INEKPVPETIFRQVEGLVKQRDQDEKIGATEFELLAATAFEIFHRLKVEYGVIEVGLGGK 125

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                    K       +  +  + +                +G   +        +   
Sbjct: 126 LDATNIMEHKSVTVIAKIGLDHQSFLGNTIEEIALQKAGIIRSGVPCVIDDSNESSVLRV 185

Query: 281 KVCAIHNKQQVTISVEGKD----FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                     + +     D               QV N   A         D    +  L
Sbjct: 186 IQDHAKEVGSLELHYPSSDSALVQVLTEEGYELHQVQNLACAFLAFRLACPDLDHSMSRL 245

Query: 337 EKLH---VVPGRFEF---VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR---IIVV 387
             +      PGR +         R     +D AH S S E++ + +      R   I  V
Sbjct: 246 LPIVKQLQWPGRLQRIDLFPIIGRHQEALLDGAHNSQSAEVLAEYVNKHYRSRSQQITWV 305

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-------RSEDPEKIRAEIIHGIPGFI 440
                 +D     IM       +D        P       ++EDP  +  + I       
Sbjct: 306 LAASKGKDVD--SIMSHNVQP-SDQVTAVQFGPVDGMPWVKAEDPVNLINQAIRYGVDTQ 362

Query: 441 EKGNRIEAIRTAIEMLNK--QDV-LVVAG 466
              N  + +R A+E  +K   D  +V+AG
Sbjct: 363 NTHNSGDDVRAALEWASKAAGDSPIVIAG 391


>gi|255533209|ref|YP_003093581.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter heparinus DSM
           2366]
 gi|255346193|gb|ACU05519.1| UDP-N-acetylmuramate/alanine ligase [Pedobacter heparinus DSM 2366]
          Length = 451

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  V NA+ A  + + +GID   +   +     V  RFE    N+       DYAH  
Sbjct: 273 PGKHNVENAVAAIAVALKLGIDHHKIKAAIASFTGVKRRFE-YIVNTPDHIYIDDYAHHP 331

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             L      +R +   + + V        R +       K+     D  ++ +  P  E 
Sbjct: 332 EELRACFDAVRQLYPDKKLTVIFQPHLFTRTRDFAAEFAKVLST-VDELLLLEIYPAREL 390

Query: 425 P 425
           P
Sbjct: 391 P 391


>gi|199599430|ref|ZP_03212824.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           HN001]
 gi|199589683|gb|EDY97795.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           HN001]
          Length = 436

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 78/246 (31%), Gaps = 13/246 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY+   +  +NA      ++       + + DD + +++  + 
Sbjct: 162 AYHPDYMIMTNIDFDHPDYYHGFEDVYNAFETEANQVQKA---IVAWGDDPWLRKLKAKV 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              +               +     F  PL GE  V NAL    
Sbjct: 219 PVYYYGTSDRDDFQARNVKRDTKGSSFDAYF---HDELIGHFFVPLFGEHSVLNALAVVA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D+ L+   L     V  RF     + +   I  DYAH  N ++  L   R   
Sbjct: 276 VAHMEKLDAGLIARELGNFSGVKRRF--AEKDLKDMIIVDDYAHHPNEIKATLDAARQKY 333

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-AEIIHGI 436
             + I+         R Q   P   ++    AD   +T   +   E   KIR  +I+  I
Sbjct: 334 PDKAIIAVFQPHTYSRTQAYEPQYVQVLSQ-ADQTFLTPIFSSAREKNGKIRSEDIVAQI 392

Query: 437 PGFIEK 442
            G    
Sbjct: 393 KGAAVI 398


>gi|195941973|ref|ZP_03087355.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi 80a]
 gi|224532449|ref|ZP_03673075.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
 gi|224512621|gb|EEF82996.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
          Length = 468

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 130/417 (31%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+       + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +   +  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A    +   L K    II 
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEA-FLQYINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +DD    ++ ++ +     + S G              +           ++VE K   F
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSEYFCFSFLGLLNVELKTVLF 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L     +    +          D    ++ + K +    R   V     G     DY
Sbjct: 286 HNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIV----- 415
           AH    ++  L  I+     + I++        R +       ++  D ADI I+     
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSD-ADILILHNIYL 404

Query: 416 ---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|169350884|ref|ZP_02867822.1| hypothetical protein CLOSPI_01658 [Clostridium spiroforme DSM 1552]
 gi|169292470|gb|EDS74603.1| hypothetical protein CLOSPI_01658 [Clostridium spiroforme DSM 1552]
          Length = 386

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 118/362 (32%), Gaps = 26/362 (7%)

Query: 94  VVDNTRKFLSLFASRLYGK-HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTST 152
            V  T +      ++       +N++ + GT+GK S  +F+++I  + G +         
Sbjct: 16  RVKRTFEQFQEIVTKYSFNVKQKNMIHIAGTNGKGSTVNFIKEILMKHGYTVGTFTSPYM 75

Query: 153 ISSFAQDNRLTTPSPIY-LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTN 211
           I    +            L K ++ L                L   R             
Sbjct: 76  IVHNDRICVNGNMISDDKLLKIINELEDIIKKENLSMFEIDVLIMLRYFD---ELDLDYR 132

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +    I     +    ++   +   +       +  + D  ++       +      +  
Sbjct: 133 IIETGIGGLCDKTNVIDSICSVITNIGYDHQFMLGNSLDEIARHKAGIIKSRKPCFTTES 192

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE---------FQVYNALVAAGLC 322
            +      K+VC  ++ Q     V+  ++ ++F              +QV N ++A  +C
Sbjct: 193 NKEIVDIFKEVCKTNDSQLYVCDVKEVNYPYVFNCLSNEYVLKTGGSYQVKNVVLAINVC 252

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +      +++        PGRFE  G+       Y+D AH  + +  + K I+     
Sbjct: 253 NYLIDLDKELVQQAIDCFNWPGRFEKFGSI------YLDGAHNVDGILALKKTIKDQKLE 306

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDD---NPRSEDPEKIRAEIIHGIPGF 439
            I++VF    D+D      M  + ++   I +  DD   N    + + I  ++I      
Sbjct: 307 DIVIVFSALSDKDVC---EMKALLIEYPLIQVSFDDERLNSDDINYKDILNKLIGNYKNI 363

Query: 440 IE 441
           + 
Sbjct: 364 VV 365


>gi|145636410|ref|ZP_01792078.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittHH]
 gi|145270235|gb|EDK10170.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittHH]
          Length = 389

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 75/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 112 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 166

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 167 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 226

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 227 AAHHAGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 285

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 286 GGGVRILAVLEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQ---CVQ 342

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 343 PAYWNANLDRLVDMIVAEAQPTDHILV 369


>gi|78187343|ref|YP_375386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium luteolum DSM 273]
 gi|78167245|gb|ABB24343.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 491

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 100/368 (27%), Gaps = 37/368 (10%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              + V GT GK++  S +  + +  GL    +                 P    +    
Sbjct: 121 NTSIVVAGTHGKTTTTSIIAWLLESGGLKPGFL-------------VGGIPENFGIGCRP 167

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMR 232
           S  S  G      +         R   +          N+  DH D   + +    +   
Sbjct: 168 SGRSEAGFFVSEGDEYDTAFFDKRSKFLLYRPDIALINNVEFDHADIFNSLEEIKRS--F 225

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L     A+I   D      +            +     ++               
Sbjct: 226 RLLVNLIPSKGALIVNGDDPVAMEVAAGARCRLETFGLTEGCDWMAGNIDVGEEGSTFDV 285

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                    F  PL G + + N + +  +    G+    V E L        R E +GT 
Sbjct: 286 YYKGSLLQRFHAPLFGNYNITNTVASIAVATLAGMTLEQVEEGLPGFLRPKRRMETIGTF 345

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-D 411
                +  D+AH   ++ + L+ IR     R I+           +     ++A      
Sbjct: 346 EGNITLVEDFAHHPTAIRVTLEAIRERWPRRRILTCFEPRSNTTTRNIFQDELAACFGPA 405

Query: 412 IAIVTDDNPRSE--------DPEKIRAEI--------IHGIPGFIEKGNRIEAIRTAIEM 455
             +V     R E        D  K++  +        + G       G+    +R   E 
Sbjct: 406 EVVVMGKVHRPERYGPGGSLDTGKLKEALEREGKTVFLAGADPDDYPGDI---VRFLHEN 462

Query: 456 LNKQDVLV 463
           L   DV++
Sbjct: 463 LQPNDVVL 470


>gi|313680165|ref|YP_004057904.1| UDP-N-acetylmuramate--l-alanine ligase [Oceanithermus profundus DSM
           14977]
 gi|313152880|gb|ADR36731.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanithermus profundus DSM
           14977]
          Length = 450

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/173 (24%), Positives = 56/173 (32%), Gaps = 18/173 (10%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NA+ A       G+D AL    L        RF+  G    G  +  DYAH  
Sbjct: 271 PGRHNVENAVAALATAHLEGLDPALAACALAGYKGAARRFQTTGHLR-GAWVVDDYAHHP 329

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
             +   L   R       +V       R Q       + AL  AD   V D    SE+P 
Sbjct: 330 TEVRATLAAARATGRRVRVVFQPHRYLRTQQMWARFAE-ALRDADEVWVLDVYAASEEPI 388

Query: 426 -----EKIRAEIIH-GIPGFIEKGNRIEA---IRTAIEM-LNKQDVLVVAGKG 468
                  I   +   G         R  A   +R A+       D+++  G G
Sbjct: 389 PGVSGALIADRLRELGHERA-----RFAAWEEVRGALAESAKAGDLILTMGAG 436


>gi|239503928|ref|ZP_04663238.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB900]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 89/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKATLSAELISIDGSHFKVLENGNVVGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +GT + G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTIN-GIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVI 435


>gi|212213338|ref|YP_002304274.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuG_Q212]
 gi|226706320|sp|B6J2Q2|MURC_COXB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212011748|gb|ACJ19129.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuG_Q212]
          Length = 465

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 124/429 (28%), Gaps = 47/429 (10%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
             DG      AI Q A+  V SSA    +          I              + L  +
Sbjct: 59  NHDG-----TAITQ-ADCAVYSSAIGATNPELMAAKQAKI-----PLLKRGEMLANLMKE 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +    +AV G  GK++ +  +      + L          +++     R+          
Sbjct: 108 Y--QSIAVAGAHGKTTTSGMLSHAFVEANLD-PTFMVGGVLNNSQTPARVGNG-----HY 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++       + + +                      TN+  DH+  +            
Sbjct: 160 FIAEADESDASFLFM---------------HPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F E   ++   ++  DD   +E+                    +       I +  Q+ 
Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIAPLLSRRVITYGFSSDAQYRVVDYCQQGIQSLFQIH 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        +PG+    NA     +   + ++   +L+ L     V  RF   G  
Sbjct: 265 SPQRKAPLTVKLSMPGQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRFTIRGEM 324

Query: 353 SRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  +   DY H  N ++  L   R     R + V      R    R +M +    L
Sbjct: 325 ILPKGNALIIEDYGHHPNEIKATLAAARAAWPERRM-VLVFQPHRYSRTRDLMTEFVSVL 383

Query: 410 A--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQD 460
           A  D  ++ +     E P        +   + +G+         ++ +  T  ++    D
Sbjct: 384 AETDWLVLLEVYSAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPND 443

Query: 461 VLVVAGKGH 469
           ++++ G G+
Sbjct: 444 IIILQGAGN 452


>gi|238754435|ref|ZP_04615790.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
 gi|238707264|gb|EEP99626.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
          Length = 476

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 68/361 (18%), Positives = 113/361 (31%), Gaps = 48/361 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 64  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAVAGT 112

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 113 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGVHARLGSSRYLIAEADESDASFLH-- 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH++ +Q            F   LP    
Sbjct: 170 ------------------LQPMVAIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGR 211

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DF 302
           A++  DD   +E++ R                   +     I  +   T+  + K     
Sbjct: 212 AVMCVDDPVVRELLPRVGRHITTYGFSDDADV--QIASYRQIGPQGHFTLRRQDKSLLTV 269

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSR 354
               PG     NA  A  +    GID   +L  L        RF        E V   S 
Sbjct: 270 TLNAPGRHNALNAAAAVAVATEEGIDDEAILRALSSFQGTGRRFDFLGNFPLEKVNGKSG 329

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +  DY H    +   +K  R     + I V      R    R +    A  L D+ +
Sbjct: 330 SVMLVDDYGHHPTEVSATIKAARAGWPDKRI-VMVFQPHRYTRTRDLYDDFANVLEDVDV 388

Query: 415 V 415
           +
Sbjct: 389 L 389


>gi|225351407|ref|ZP_03742430.1| hypothetical protein BIFPSEUDO_03001 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157751|gb|EEG71034.1| hypothetical protein BIFPSEUDO_03001 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 527

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 51/406 (12%), Positives = 113/406 (27%), Gaps = 56/406 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + +    ++ +TGT+GK S A   + IC+  G+ +             +           
Sbjct: 34  HPEQSFRVIHITGTNGKGSTARMTEAICRAYGMRTGLYTSPHLEHVNERIAIDGQQLSDD 93

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG----------RDHIDY 219
                       V  V ++       +     +      +                   +
Sbjct: 94  DFVDTWDQIKDLVAMVDMKMGELDKPKMSFFEVLTAMAIWKFADAPVDVAIVEVGMGGRW 153

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             T     +A +    ++             A  K  + +             +     +
Sbjct: 154 DATNVLDADAAIIGPIDMDHMAWLGNTVEQIASEKVGIIKPGCTAVIGRQPHEEAVMPII 213

Query: 280 KKVCAIHN--------------------KQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           ++  A ++                     Q VT+      +  +          +  +AA
Sbjct: 214 EEAAAENHANLVRDGIEAEVVTRIPAVGGQVVTLRTPNGTYAEVPVAKFGEHQAHNALAA 273

Query: 320 GLCIAIGIDSA-----LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
                + I         ++        +PGR E + T+     I +D  H  N+ E +  
Sbjct: 274 LCAAEVVIPVNGALDGDLVAEALSTVRIPGRIEQIRTSPT---IILDGGHNVNAAESLRA 330

Query: 375 NIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-----EDPEKI 428
            I       +++ V    GD+          +   L    IVT+++ R      ED + +
Sbjct: 331 AIEENYDFQQLVGVIAMMGDKQVE---EYLGVLEPLLSHVIVTENSWRDRVMPAEDLKTV 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
              +  G           +AI+ A+ M++  D         +++ G
Sbjct: 388 AERVF-GAERVTCVPELPDAIQEAVNMVDADDELGVGYGHGVLICG 432


>gi|213962172|ref|ZP_03390436.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga sputigena
           Capno]
 gi|213955178|gb|EEB66496.1| UDP-N-acetylmuramate--alanine ligase [Capnocytophaga sputigena
           Capno]
          Length = 448

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   + +  +           G  + D  F  PG   + NAL A  + +  GI   
Sbjct: 235 EDNSDYSFQNIHIVDGIYHFDFKYAGGIYKDITFMKPGRHNLLNALAAIAMAVKAGIAPE 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L HL     V  RF       +      DYAH  + +  + + +  +       +   
Sbjct: 295 KLLPHLATFKGVKRRF-SYIIKEKDFVFIDDYAHHPSEINALYQAVAEMYPNTPKTIVFQ 353

Query: 391 GG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433
                R +       K      D  I+ D  P  E P E I ++++
Sbjct: 354 PHLFTRTRDFMDDFAKSLSQF-DEVILLDIYPARELPIEGITSQVL 398


>gi|293391930|ref|ZP_06636264.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952464|gb|EFE02583.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 62/218 (28%), Gaps = 9/218 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+G DH D      A       +   +           +++  + +    
Sbjct: 178 HYNPRTLIINNIGFDHADIFDDLNAIQRQFHHMIRTIPNNGRILSFAGEESVQQTLA--- 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +       +        K  +  + + GE  + N L+A  
Sbjct: 235 --MGCWSECQYVGKDQEWYAERIKHDCTEFAVYHKGEKITEVHWNIVGEHNMRNGLMAIA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
                G+        L        R E  G N  G  +Y D+AH    ++  L  +R   
Sbjct: 293 AANHAGVSIENACATLGSFINAKRRLEVKG-NVHGITVYDDFAHHPTEIQATLTALRDKV 351

Query: 380 -TSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIV 415
             + RI+ V     +  + G        AL LAD   +
Sbjct: 352 GQNARILAVLEPRSNTMKMGVHKDEIAPALKLADAVFL 389


>gi|223982901|ref|ZP_03633117.1| hypothetical protein HOLDEFILI_00391 [Holdemania filiformis DSM
           12042]
 gi|223965144|gb|EEF69440.1| hypothetical protein HOLDEFILI_00391 [Holdemania filiformis DSM
           12042]
          Length = 386

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
             GRFE +          +D AH +  ++ +  +++ +   R ++VF    D++     +
Sbjct: 280 WAGRFEVL---QEHPLTIIDGAHNAPGIQALCISVQDLPHPR-VIVFTALKDKETE---V 332

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           M K    ++D  I+T  D  R++   ++       I G     +   A+RTA +    +
Sbjct: 333 MAKQLKQISDSLIITQFDYFRAQTGVQLV------IEGSELIEDWKTAVRTARDKAGAE 385


>gi|218290237|ref|ZP_03494391.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218239712|gb|EED06903.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 465

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKR 399
           R + V        + +D A  + S   + +   T        GR+ +V     D+D    
Sbjct: 314 RLQRVRREPD---VVIDGAIHALSAAYVRRFAETWRAAREGRGRVHLVLSLPDDKDADG- 369

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            +M ++A  LAD  + T   N        + A           + N  +AIR A+   ++
Sbjct: 370 -VMRELA-PLADRILFTETTNSALHFTRDLVALAATLGYAASHESNPHDAIRAALAEASR 427

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSV 484
            D++++ G              +   
Sbjct: 428 DDLVLLVG-----TQSFVGDALRHFD 448


>gi|254457808|ref|ZP_05071235.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207085201|gb|EDZ62486.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 330

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 19/108 (17%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M+L++ +     +L N+  +    +              ++ G +F A   N+ D    I
Sbjct: 1   MRLENFLALTHAKLTNEPCV--NSFENTVFEA-----NKVKRGDLFFAY--NESD----I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
             A++ GA  IV      + D      +    + V++    L      
Sbjct: 48  DLAVSNGAYGIVFDKPTQIID------NEIAWIKVEDIDDALKRLLRF 89


>gi|304413211|ref|ZP_07394684.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Candidatus Regiella insecticola LSR1]
 gi|304284054|gb|EFL92447.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Candidatus Regiella insecticola LSR1]
          Length = 420

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 100/370 (27%), Gaps = 27/370 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    IL   GT+GK +    ++ I   +GL          +    +        P    
Sbjct: 46  KPAAKILTFAGTNGKGTTCCVLEAILLSAGLRVGVYSSPHLLRYTERIRIQGLELPETAH 105

Query: 172 KALSYLSSQGVTHVSVEASSH----GLDQHRLDGIKL--------IAGSFTNLGRDHIDY 219
                        VS+          L   +   + +             TN+    +  
Sbjct: 106 CNSFADIEAARGTVSLTYFEFSTLSALHLFKQAALDVLVLEVGLGGRLDATNIIDSDVAA 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             +       ++    E + +E   I          ++                   ++ 
Sbjct: 166 ITSIGLDHTDRLGADRESIGREKAGIFRRGKPA---IVGEPDMPHSVATIAAEIEAKLYH 222

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV-LEHLEK 338
                  ++Q      +            +  + NA  A  +   + +      +    +
Sbjct: 223 CNDDWQFSRQTDDWCWQSGSRVLTHLPLPKVPLQNAATALAILHYLALPLNDSAIYQGLQ 282

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDRDQ 396
              +PGRF+ +        + +D AH S++   +++    +    G+I  V G   D+D 
Sbjct: 283 TAFLPGRFQILTEQPL---LILDVAHNSHAARYLIERFDQLPKRSGKIRAVVGMLADKDI 339

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                      +  D          +E        +   +       +       A++  
Sbjct: 340 AST---LTCLSERVDEWYCVS---LTEPRGASAELLAQHVSKPRLFADVESGWYQAMKDA 393

Query: 457 NKQDVLVVAG 466
           + QDV++V G
Sbjct: 394 DSQDVVIVCG 403


>gi|258620877|ref|ZP_05715911.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
 gi|258625122|ref|ZP_05720039.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258582573|gb|EEW07405.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258586265|gb|EEW10980.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
          Length = 486

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 127/404 (31%), Gaps = 50/404 (12%)

Query: 80  QDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            +  A      PI+     R+   L+      +G      +AV GT GK++  + V QI 
Sbjct: 96  PEIQAAREKRIPIV-----RRAEMLAELMRFRHG------IAVAGTHGKTTTTALVTQIY 144

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             +GL    +     + S   + RL +   +      S  S                   
Sbjct: 145 SEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH---------------- 187

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               ++ +    TN+  DH+D +             F   LP    AI+  DD   +E++
Sbjct: 188 ----LQPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELI 243

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNAL 316
            R                   ++       + + T+  +GK + D    +PG     NA 
Sbjct: 244 PRVSRQVITYGFAEDADV--RIENYRQQGQQGKFTVVRKGKANLDITLNIPGRHNALNAS 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMIL 373
            A  +     I    +L  +        RF+ +G    G     +  DY H    +++ +
Sbjct: 302 AAIAVATEDDISDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTI 361

Query: 374 KNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------ 425
           K  R   + + +V+        R +        +     D+ I+ D     E P      
Sbjct: 362 KAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVLEQ-VDVLIMLDVYSAGEKPIAGADG 420

Query: 426 EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   I   G    I   +          +L   D+++  G G
Sbjct: 421 RSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAG 464


>gi|255320724|ref|ZP_05361901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SK82]
 gi|262380645|ref|ZP_06073798.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SH164]
 gi|255302340|gb|EET81580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SK82]
 gi|262297593|gb|EEY85509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SH164]
          Length = 454

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 88/283 (31%), Gaps = 19/283 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P     I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSTGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++           +    +     ++          +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTGLDTDTQAELYAELIQADGSHFKVLEQGKVIAEVQWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +GT   G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSIVQACEALSSFGGVKRRMELLGTLR-GIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           E  L   R  +   R+  V      R    R  MG        +  LAD  I     P  
Sbjct: 342 ETTLDGARKRLGERRLWAVIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV 464
            D +     ++   P   +   +  E I+  ++   + D +V+
Sbjct: 395 LDWD--LQPVVEAAPNKSQVSRSLDEIIQRIVQEAGEGDAVVI 435


>gi|241667549|ref|ZP_04755127.1| UDP-N-acetylmuramate-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876094|ref|ZP_05248804.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842115|gb|EET20529.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 452

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 95/275 (34%), Gaps = 10/275 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+  ++            F      E+  +   D   +  + K   
Sbjct: 169 LNPNVAIVTNIDLDHMSTYKNSYDNLLENFANFLMKESIENIYLCVDDHGCNDLLDKYRS 228

Query: 262 NAGCRVLSVGY-QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                ++S G+       +       N    T+  +  ++DF   LPG++ V NA     
Sbjct: 229 RVVGNIVSYGFAINSDARIYNYRVSDNLTTFTVEYKSGNYDFELQLPGKYNVQNATACVV 288

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--RGGRIYVDYAHTSNSLEMILKNIR- 377
            C+ +G     +   L  +  V  RF+            +  DY H    +   L  +R 
Sbjct: 289 ACLDLGFRYEDIYNALVTVKGVARRFDVYDKQISSHKIPVIDDYGHHPVEVTSSLGAVRD 348

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIM--GKIALDLADIAIVTDDNPRSEDPEKIRA--EII 433
              + +II VF     R    R ++     AL LAD  I+       E   +     ++I
Sbjct: 349 KYPNKKIIHVF--QPHRYTRNRDLLIDWPKALSLADQLIILPTYSAGEQIIQGAESQDLI 406

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             IP  +   +    +    ++++   V+++ G G
Sbjct: 407 RNIPKALLADSFDHVLYFLEKLVDDNTVVLIQGAG 441


>gi|189082527|sp|Q10XH7|MURC_TRIEI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 539

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 59/438 (13%), Positives = 121/438 (27%), Gaps = 72/438 (16%)

Query: 71  IVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +    ++ A +    PI    +    L               +AV GT GK++
Sbjct: 121 VVCSTAINTTNSEYKAAVELGCPIFHRSDLLAAL---------IQDYQSIAVAGTHGKTT 171

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    +      +         +P                       
Sbjct: 172 TSSLIGFMLLEAGLDPTIVIGGEVDAWGGNARLGRSP---------------------YL 210

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D++ +            E             
Sbjct: 211 VAEADESDGSLVKLSAHIGVVTNIELDHPDHYDSLDQVVEIFQVFKENCQNLVGCI---- 266

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  V ++        ++      +         +                   L G
Sbjct: 267 ---DCSTVREKLQPTISYSINFESDAHYKVDCVHYQSNVTLARVWEKGQILGQLKLRLLG 323

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL A  +   +G++ + +   +        RFE+ G    G     DYAH  + 
Sbjct: 324 KHNLSNALAAVAVGRLLGLEFSTITSAIALFEGAHRRFEYRG-ECNGIVFVDDYAHHPSE 382

Query: 369 LEMILKNI----------RTITSGRII-------------VVFGCGGDRDQGKRPIMGKI 405
           +   L             +   S + +             VV      R    +  + + 
Sbjct: 383 INATLAAANLQKNQELSPKPHISTKKLTLKTQNNSLKIERVVAIFQPHRYSRTQAFISEF 442

Query: 406 ALDL--ADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           A     AD+ IVT+     E      + +++   I         + +     +   ++L 
Sbjct: 443 AQSFNDADMVIVTNIYSAGESSEGQINSQQVAEAISRYHRQVYYRSSLDSVSKFLYQVLK 502

Query: 458 KQDVLVVAGKGHETVHIV 475
             D+ +    G+    I+
Sbjct: 503 PGDLAIFLSAGNLN-QII 519


>gi|113477459|ref|YP_723520.1| UDP-N-acetylmuramate--L-alanine ligase [Trichodesmium erythraeum
           IMS101]
 gi|110168507|gb|ABG53047.1| UDP-N-acetylmuramate--L-alanine ligase [Trichodesmium erythraeum
           IMS101]
          Length = 556

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 59/438 (13%), Positives = 121/438 (27%), Gaps = 72/438 (16%)

Query: 71  IVVSSAYS--LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +V S+A +    ++ A +    PI    +    L               +AV GT GK++
Sbjct: 138 VVCSTAINTTNSEYKAAVELGCPIFHRSDLLAAL---------IQDYQSIAVAGTHGKTT 188

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            +S +  +   +GL    +      +         +P                       
Sbjct: 189 TSSLIGFMLLEAGLDPTIVIGGEVDAWGGNARLGRSP---------------------YL 227

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            +        L  +    G  TN+  DH D++ +            E             
Sbjct: 228 VAEADESDGSLVKLSAHIGVVTNIELDHPDHYDSLDQVVEIFQVFKENCQNLVGCI---- 283

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                  V ++        ++      +         +                   L G
Sbjct: 284 ---DCSTVREKLQPTISYSINFESDAHYKVDCVHYQSNVTLARVWEKGQILGQLKLRLLG 340

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           +  + NAL A  +   +G++ + +   +        RFE+ G    G     DYAH  + 
Sbjct: 341 KHNLSNALAAVAVGRLLGLEFSTITSAIALFEGAHRRFEYRG-ECNGIVFVDDYAHHPSE 399

Query: 369 LEMILKNI----------RTITSGRII-------------VVFGCGGDRDQGKRPIMGKI 405
           +   L             +   S + +             VV      R    +  + + 
Sbjct: 400 INATLAAANLQKNQELSPKPHISTKKLTLKTQNNSLKIERVVAIFQPHRYSRTQAFISEF 459

Query: 406 ALDL--ADIAIVTDDNPRSE------DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
           A     AD+ IVT+     E      + +++   I         + +     +   ++L 
Sbjct: 460 AQSFNDADMVIVTNIYSAGESSEGQINSQQVAEAISRYHRQVYYRSSLDSVSKFLYQVLK 519

Query: 458 KQDVLVVAGKGHETVHIV 475
             D+ +    G+    I+
Sbjct: 520 PGDLAIFLSAGNLN-QII 536


>gi|262044868|ref|ZP_06017911.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037837|gb|EEW39065.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 438

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIE--------LFCREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L      L         +
Sbjct: 118 TVTTLVGEMAKAAGINVGVGGNIGLP-------------ALMLLDTDREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTCVVNADD 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A     +   +R  + G  V       +               + +  E        PL 
Sbjct: 216 ALTMPVRGADERCISFGVDVGDYHLNRQQGETW----------LRVKGEKVLNVKEMPLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYSNALAALALADAAGLPRASSLKVLTTFTGLAHRFQLVLDHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  ++    G + ++ G  G   D    KR + G       D   +        +
Sbjct: 326 STEAALNGLQL--DGTLYLLLGGDGKSADFTPLKRYLGG-------DRIRLYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPEV------AVQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|194290201|ref|YP_002006108.1| bifunctional: folylpolyglutamate synthase; dihydrofolate synthase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224036|emb|CAQ70045.1| bifunctional: folylpolyglutamate synthase; dihydrofolate synthase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 436

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 61/390 (15%), Positives = 109/390 (27%), Gaps = 44/390 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN----------- 160
           +    +  V GT+GK S  + +++I   +G           IS   +             
Sbjct: 39  RIDAAVFTVGGTNGKGSTCAMLERILLEAGYKVGCHTSPHLISFNERARLNGEIATDAQL 98

Query: 161 ----------RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAG 207
                     R +   P+ L        +      +    +  L+     RLD   +I  
Sbjct: 99  LPHFEAVERARNSFADPVSLTYFEFTTLAIIHFFAASGLDAIILEVGLGGRLDATNVIDT 158

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
               +    ID+ Q               +     PAI          V           
Sbjct: 159 DCAIITSVDIDHTQYLGNTREEIGFEKAGIFRPGVPAICGDPVPPKSLVAHAEAVGAELW 218

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           L            +     +       + G  +  L           AL A         
Sbjct: 219 LVGRDYHFQAAKGQERQQWDWSGGGRKLNGLGYPALRGANQLLNASAALAALQALRERLP 278

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IV 386
            SA  + +      +PGRF+ +        + +D AH  ++   + +N+  +   R    
Sbjct: 279 VSAQEVRNGLAFVELPGRFQVLPGRPA---VILDVAHNPHAAATLGQNLENMGFFRYTYA 335

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDNP--RSEDPEKIRAEIIHGI------ 436
           VFG   D+D      +  +   +AD        D P  R+     +  ++  G       
Sbjct: 336 VFGAMQDKD------IAGVLQHVADKVDHWCLCDLPTERAASAADLLGKLEAGGFQPGPD 389

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  +   A R AIE   + D ++V G
Sbjct: 390 ATAACFSSPEAAFRDAIERATENDRILVFG 419


>gi|146310301|ref|YP_001175375.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
 gi|167017282|sp|A4W6J4|MURC_ENT38 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145317177|gb|ABP59324.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
          Length = 491

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 66/411 (16%), Positives = 126/411 (30%), Gaps = 57/411 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            +  A   +  P++     R+   L+      +G      +AV GT GK++  + V  I 
Sbjct: 93  PEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAVAGTHGKTTTTAMVSSIY 141

Query: 138 QRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +G   +F  G                          +      + H     +      
Sbjct: 142 AEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADESD 179

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E+
Sbjct: 180 ASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIREL 239

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNA 315
           + R                   ++       +   T++ + K+        PG     NA
Sbjct: 240 LPRVGRQTTTYGFSEDADV--RVESYTQTGAQGHFTLARQDKELLHVTLNAPGRHNALNA 297

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTSN 367
             A  +    GI+   +L  LE       RF+F+G               +  DY H   
Sbjct: 298 AAAVAVATEEGIEDDDILRALESFQGTGRRFDFLGEYPLEPVNGKSGTAMLVDDYGHHPT 357

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
            ++  +K  R     + +V+        R +        +     D  ++ D     E P
Sbjct: 358 EVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLCQ-VDALLMLDVYAAGEMP 416

Query: 426 ------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                   +   I   G    I   +  +A     ++L   D++++ G G+
Sbjct: 417 IPGADSRSLCRTIRGRGKVDPILVSDPAQAAEMLAQVLTGNDLILIQGAGN 467


>gi|126461548|ref|YP_001042662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|158513433|sp|A3PHS4|MURD_RHOS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|126103212|gb|ABN75890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 465

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 123/411 (29%), Gaps = 50/411 (12%)

Query: 67  GAEAIVVSS------AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NIL 118
           G   +V S              +  + +  P+   ++   F   FA+R +    +   ++
Sbjct: 66  GVALLVTSPGIPHLYPAPNPVIARAMAAGVPV--DNDIGLFFRSFATRDWDAFDQMPRVV 123

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            VTG++GKS+  + +  I   +G  +   G            R      + L        
Sbjct: 124 CVTGSNGKSTTTALIHHILSEAGRPTQMAGNIGRGVLDLDPARDGEVVVLEL-------- 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                      SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  
Sbjct: 176 -----------SSYQTDLAR--ALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGG 222

Query: 239 PKESPAIIYADD----AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           P  +   +   +    A    V                +     +        + +    
Sbjct: 223 PDRAVIGVDEPEGLYLAGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWRKGRQ 282

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           +   D   +  LPG     NA  A   C  +G+    +   L     +P R + VG    
Sbjct: 283 MASIDLRAMPGLPGAHNHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKGG 342

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
              +    A   +S    L+    I   R I             +P +G +       A 
Sbjct: 343 VRFVNDSKATNVDSAAKALQAFPKI---RWIAGGLGKDGGIAALQPHLGSVV-----KAY 394

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           +   + R          +  G            A+  A E     +V+++A
Sbjct: 395 LIGHSARD-------FALQIGATDHEICETMERAVARAAEEAQPGEVVLLA 438


>gi|288800560|ref|ZP_06406018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332773|gb|EFC71253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 443

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 122/364 (33%), Gaps = 44/364 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
            FA R        ++ +TG++GK++  S +  I + +G      G               
Sbjct: 94  EFAGRYTN---SKMICITGSNGKTTTTSLIYHIFKEAGYDVSLAGNIGK----------- 139

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
               + L  A +  +     +  +E SS  LD       +       N+  DH+D ++ +
Sbjct: 140 ---SLALQVAEAPHA-----YYIIEISSFQLDDM--YDFRANTAVLLNITPDHLDRYEYK 189

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +        +   K+   + +ADD     V    H        + +     +    C
Sbjct: 190 MQLYTDAKMRIIQNQTKDDSFVYWADDDV---VAAELHKYNIEAQQLTFSENASNSVAAC 246

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             + +  V   VE         L G   +YN+L AA    A G+D   + + L     V 
Sbjct: 247 VDNGEIVVKKPVEFTMSRAELSLLGRHNLYNSLAAALAAAANGVDVEAIKQGLRTFAGVE 306

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
            R E+V T +    I    A   ++    L+++ T       ++   G D+      I  
Sbjct: 307 HRLEYVTTANGVRYINDSKATNVDACRWALESMTT-----PTILILGGLDKGNDYNEIKQ 361

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN---RIEAIRTAIEMLNKQD 460
            +      +  +  DN        +  E   G+   +E  +     E ++   +   + D
Sbjct: 362 LVLDKCKALVFMGADN-------SVLHEFFDGLG--LEIADTHSMKECMQECKKRAVEGD 412

Query: 461 VLVV 464
            +++
Sbjct: 413 TILL 416


>gi|260583459|ref|ZP_05851207.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
 gi|260158085|gb|EEW93153.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
          Length = 443

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 92/320 (28%), Gaps = 44/320 (13%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           KFL               +A+TG+ GK+S    +  +      +S+ IG  +       +
Sbjct: 95  KFLGELLKGY------KSVAITGSHGKTSTTGLLAHVLSAMEPTSYLIGDGTGHGVEGSE 148

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                   +   +   +  +    +  +                      TN+  DH DY
Sbjct: 149 Y-----FVLEACEYKRHFMAYKPDYAIM----------------------TNIDFDHPDY 181

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           +       +A    FE    +    II   D      +          ++        ++
Sbjct: 182 YTDIDDVQSA----FESFGRQVKKGIIACGDDARLHELDVTTPITYYGIAKSNDVVAENI 237

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +K     +            FD   P  G   + NAL           +   +  +L+  
Sbjct: 238 EKDTEGSHFDVYIYGKFYGKFDI--PTFGTHNILNALAIITFYYLNNFNPEELASNLKTF 295

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQG 397
             V  RF           +  DYAH  + +   L   R    + +I+ VF      R   
Sbjct: 296 GGVKRRFSEKKIKEI--TVIDDYAHHPSEIRATLDAARQKYPTKKIVAVFQPHTFTRTIA 353

Query: 398 KRPIMGKIALDLADIAIVTD 417
                 K AL LAD   + D
Sbjct: 354 LLDEFAK-ALSLADDVYLCD 372


>gi|229825978|ref|ZP_04452047.1| hypothetical protein GCWU000182_01342 [Abiotrophia defectiva ATCC
           49176]
 gi|229789720|gb|EEP25834.1| hypothetical protein GCWU000182_01342 [Abiotrophia defectiva ATCC
           49176]
          Length = 469

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 69/234 (29%), Gaps = 19/234 (8%)

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R    G R ++                       I            + GE  V+N+L  
Sbjct: 238 RIIYYGLRPVNGREPDYTAKNITYNDFGFPSYELIVKGENKGLVELSVTGEHNVFNSLAV 297

Query: 319 AGLCIAIG------IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
               +         I    + + ++K      RF++ G    G  I  DYAH    +   
Sbjct: 298 IAAALEPSSIYPKGIALEKIKQGIKKYTGTDRRFQYKG-ERDGYTIVDDYAHHPTEIRAT 356

Query: 373 LKNIRTITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVT------DDNPRSEDP 425
           L+  + +   R+IV F      R +        +   +ADI +        ++N      
Sbjct: 357 LEAAKRVKHNRLIVAFQPHLYSRTKTFLHEFATVLS-MADIVVFAEIYAAREENHHDISS 415

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGE 479
           + IR  +              E     I      D+L+  G G     IV  GE
Sbjct: 416 DNIREIMSENGHEAYFFKTFEEVENFLIHTCKPGDLLITMGAGD----IVKVGE 465


>gi|150020139|ref|YP_001305493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
 gi|166224767|sp|A6LJK7|MURD_THEM4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149792660|gb|ABR30108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
          Length = 426

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 114/349 (32%), Gaps = 67/349 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GKS+  S +  +  +  + +   G      +   ++ L               
Sbjct: 108 IAVTGSVGKSTTVSLIYHLLNK-KVRALLAGNIGIPIAKLLNDNL--------------- 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 ++ +E SS  L   +    K    S  N+  +H+++H   + Y ++K ++    
Sbjct: 152 ---RANYLVLEISSFQLFWSKRF--KPNISSILNIYPNHLNWHPDMEHYVSSKFKIASFQ 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +                           +   +    +L KV A     +   S+E 
Sbjct: 207 SKDDVFVY-----------------------NPNDEYIRKNLYKVSAKKVPFRFDFSIE- 242

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P+   ++     VAA   I   +      E LE    +P R E+V   +    
Sbjct: 243 -----KLPIHLRYRQTVENVAAAKTILETMGYEFKWEFLEDFEKLPHRMEYVTEINGVKF 297

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                A        +++ I        +++ G G + D     ++ KI  +     I+  
Sbjct: 298 FNDSKATN---AIAVIRAIENFDDKLHLIMAGIGKNEDYT---LLAKIIKEKVK--ILAL 349

Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             P       I  EI   +    + +     +A+     M ++ DV+++
Sbjct: 350 VGP-------IADEIEPYLDGVRYFKVDTINQAVNQLFSMASRGDVIML 391


>gi|309750460|gb|ADO80444.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R2866]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 76/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G    G  +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNGITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ +     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILALLEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|319901731|ref|YP_004161459.1| FolC bifunctional protein [Bacteroides helcogenes P 36-108]
 gi|319416762|gb|ADV43873.1| FolC bifunctional protein [Bacteroides helcogenes P 36-108]
          Length = 417

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/365 (12%), Positives = 97/365 (26%), Gaps = 14/365 (3%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSP 167
           +       + V GT+GK S +  +  I Q +G           I    +        P  
Sbjct: 41  HPHRSFRSIHVAGTNGKGSCSHTLAAILQEAGYRVGLYTSPHLIDFRERIRVNGRPIPEE 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +       +     H S    +  +        K+            +D         
Sbjct: 101 YVIHFVEKERNFFEPLHPSFFELTTAMAFRYFADEKVDVAVIEVGLGGRLDCTNIIHPDL 160

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                +  +        +    +  +  + K         +            +  A   
Sbjct: 161 CLITNISFDHTQFLGDTLAKIAEEKAGIIKKDIPVVIGETIPETKPVFLKKALETGAPVY 220

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA---IGIDSALVLEHLEKLHVVPG 344
             +     +    +       + +    ++     +      +D   V      +  + G
Sbjct: 221 FAEENDREDYPGIECELEGIYQKKNTRTILTVLPLLQEAGFRLDEQSVRSGFAHVTELTG 280

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMG 403
                        +  D  H    +  I+K ++  T  R+ +V G   D+D +G   ++ 
Sbjct: 281 LMGRWQKLQDAPTLICDTGHNVGGITYIVKQLKQQTYRRLHIVIGMVNDKDIRGVLALLP 340

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEII--HGIPGFIEKGNRIEAIRTAIEMLNKQDV 461
           + A      A V    P SE       E+    G+ G     +   A+R A +    +D 
Sbjct: 341 QEATYYFTKASVKRALPESE-----LKELASTAGLQGSCY-PDVPSAVRAAQKKSLPEDF 394

Query: 462 LVVAG 466
           + V G
Sbjct: 395 IFVGG 399


>gi|153006301|ref|YP_001380626.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. Fw109-5]
 gi|152029874|gb|ABS27642.1| UDP-N-acetylmuramate [Anaeromyxobacter sp. Fw109-5]
          Length = 513

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 107/361 (29%), Gaps = 27/361 (7%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P + + V GT GK++ ++ +  +   +G     +        F  + RL           
Sbjct: 150 PRHGVVVVGTHGKTTTSAMMGFLLHHAGRDPSFL-VGGVTRDFDSNYRLGAG-------P 201

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
              +          +     L        +     FT+   DH D ++ +  Y +A  R 
Sbjct: 202 HFAVEGDEYDTAYFDKGPKFLHY------RPRTAIFTSCELDHADIYRDEAHYESAFERF 255

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              L      A   + ++  +  + R         +V   G     + +       + T+
Sbjct: 256 MGILPEDGFLAACASYESVLR--IARGARCRVETYAVDRPGADWEARGLALSPEGARFTL 313

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +  G+    +    G        +      +    S   +           R + V   +
Sbjct: 314 ARRGEALAEVLLPVGGAHNVENALGVAAAASALGLSPAEIAAGLGAFHGVKRRQEVRGKA 373

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGD---RDQGKRPIMGKIALDL 409
            G  +  D+AH   +++  L  IR    G R++  F    +   R+  +R          
Sbjct: 374 GGVTVIDDFAHHPRAVQKTLAAIRGAYPGARLLAAFEPRSNTSRRNLHQREYAAGATWRD 433

Query: 410 ADIAIV-----TDDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           A    +     TD  P SE  D + +  ++              E +          DV+
Sbjct: 434 AAEVFLLRPAPTDRVPESERLDVDAVVRDVTAAGTPARAFATVEEMVPAIAATARPGDVV 493

Query: 463 V 463
           V
Sbjct: 494 V 494


>gi|86148541|ref|ZP_01066828.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
 gi|85833687|gb|EAQ51858.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sp. MED222]
          Length = 486

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 16/281 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D +             F   LP    A++  DD   +E++ + 
Sbjct: 187 HLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELIPQV 246

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                           I    V      +   +     + D    +PG     NA  A  
Sbjct: 247 SRQVITYGFSEDADIRIENY-VQEGQQGKFTVVREGKANLDITLNIPGRHNALNASAAIA 305

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR 377
           +     I    +L+ +        RF+ +G    G     +  DY H    +++ ++  R
Sbjct: 306 VATEDDISDEAILKAMAGTEGTGRRFDHLGEYETGKGVAMLVDDYGHHPTEVDVTIQAAR 365

Query: 378 TITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
           +  + + +V+        + +        +     D+ I+ D     E P        + 
Sbjct: 366 SGWTDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLILLDVYSAGEKPIAGADGRSLS 424

Query: 430 AEII-HGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
             I   G    I   +   A+ +A+   +   D+++  G G
Sbjct: 425 RTIRGRGKIDPIFVADIN-ALPSALANVIQGGDLVLTQGAG 464


>gi|311693456|gb|ADP96329.1| UDP-N-acetylmuramate-L-alanine ligase [marine bacterium HP15]
          Length = 481

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 90/283 (31%), Gaps = 18/283 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +  +    TN+  DH+D +             F   LP    A++  DD Y +E++ R 
Sbjct: 184 HLTPVISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCVDDGYVQEIIPRI 243

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVA 318
                    +         + + +   +    +       D      +PG   V NAL A
Sbjct: 244 SR-AIITYGIDNPEADYRAESINSDGLRTHFVVKRPAGRSDLTVELKMPGRHNVLNALAA 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKN 375
             +    G+    +   L     V  RF+  G          +  DY H    +E +++ 
Sbjct: 303 IAVATDEGVADDAICRGLAGFAGVGRRFQVYGDYQTPKGTVTLVDDYGHHPTEVEAVIRA 362

Query: 376 IRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEK 427
                  R +V+        R +       ++  +  D  ++ D     E      D   
Sbjct: 363 AHDAWPDRRLVMLYQPHRFTRTRDLYEDFVRVLSE-VDGLLLMDVYSAGEPAIPGADGRA 421

Query: 428 IRAEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
           +   I   G    +   + +E I + +   L   D+L+  G G
Sbjct: 422 LCRSIRQRGQVEPVFVEDNLE-IESLLANVLQDGDLLITQGAG 463


>gi|238892710|ref|YP_002917444.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545026|dbj|BAH61377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 96/359 (26%), Gaps = 36/359 (10%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I    G      G          D         +    
Sbjct: 102 DRWVLAVAGTHGKTTTAGMATWILDACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       Q   +
Sbjct: 203 QFHHLVRIVPGKGKIILPENDINLKQVMAMGCWSEQELVGEQGHWQAKKLNADASQWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWALVGEHNMHNGLMAIAAARHVGVLPADAANALGSFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L+ +R    G  RI+ V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLQALRGKVGGTARILAVLEP-----RSNTMKMGVCKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               AD   +         P ++       +       +        ++  +  D ++V
Sbjct: 377 SLGRADEVFLLQPQH---IPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV 432


>gi|295425114|ref|ZP_06817819.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065173|gb|EFG56076.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 459

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 112/393 (28%), Gaps = 53/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y             PI+         S              + VTG++GK++     Q+
Sbjct: 84  PYENPMVQKAEEKKVPIITEPEIALSCSE----------APYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRS----GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I        G  ++ +G      S                       +     + VE SS
Sbjct: 134 ILDHHLQKSGHHAYAVGNIGVPISEVVP------------------KATKDDILVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L     D    +A         H+DYH+T + Y NAK+ +       +     +    
Sbjct: 176 FQL-LGVTDIDPKVAAIIDIYHNVHLDYHKTFENYVNAKLNVTRFQNSADYFIANFDQKD 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K+  +                 +    +     +++ + I            LPG   
Sbjct: 235 ILKKEKETTKAKIQTFSEKDNSADYFIGDEYLESQSEKIMKIDD--------IKLPGIHN 286

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N LVA  +   +G ++  +   L        R ++V T           +    +  +
Sbjct: 287 QQNCLVAIAISKLMGAENDDIQAVLSTFAGAKHRLQYVMTLDGRKIYNDSKSTNIEAATV 346

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + + +        V+   G DR      ++  +  +     ++       E    +   
Sbjct: 347 AIPSFKQPE-----VLIAGGLDRGFTFDSLVP-LFKEHVKAIVL-----YGETKYLLADA 395

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   + +    EA+  A E+    DVL+
Sbjct: 396 ARKAGIKDIVIENTLQEAVPKAYELTEPGDVLL 428


>gi|138896203|ref|YP_001126656.1| folylpolyglutamate synthase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250159|ref|ZP_03148853.1| FolC bifunctional protein [Geobacillus sp. G11MC16]
 gi|134267716|gb|ABO67911.1| Folylpolyglutamate synthase [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210343|gb|EDY05108.1| FolC bifunctional protein [Geobacillus sp. G11MC16]
          Length = 434

 Score = 46.4 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 84/264 (31%), Gaps = 14/264 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I       +   +    V +E    G      + I  +    TN+  DH++    
Sbjct: 120 TEFEVITAMMLYYFGKKRIQDIVLIEVG-LGGRLDSTNVIYPLVSVITNVSYDHMNILGD 178

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A   A+     +       A+   +    + + K A     +   +G      H +  
Sbjct: 179 TLAQIAAEKAGIIKSGVPLVTAV--NEPEAREVIAKTAAERKAKTYWLGVDFSVSHQQTT 236

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKL 339
                    T   E +D     P   + +     V A   + +          +     +
Sbjct: 237 AEGEQFSITTPFAEYRDLRIHMPGAHQIENAATAVMAAELLRLNYSFLIEPEHIHDGLAM 296

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGK 398
              PGRFE V   S    + +D AH    +  ++  +RT     R+ V+F    D+   +
Sbjct: 297 AAWPGRFERV---SDDPLVIIDGAHNEAGIRALVDTVRTHYSDKRVHVLFAALADKPLER 353

Query: 399 RPIMGKIALDLADIAIVTD-DNPR 421
              M ++  +LA+    T  D PR
Sbjct: 354 ---MIRLLDELAETITFTTFDFPR 374


>gi|261868564|ref|YP_003256486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413896|gb|ACX83267.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 457

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 62/218 (28%), Gaps = 9/218 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+G DH D      A       +   +           +++  + +    
Sbjct: 178 HYNPRILIINNIGFDHADIFDDLNAIQRQFHHMIRTIPNNGRILSFAGEESVQQTLA--- 234

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +       +        K  +  + + GE  + N L+A  
Sbjct: 235 --MGCWSECQYVGKDQEWYAERIKHDCTEFAVYHKGEKITEVHWNIVGEHNMRNGLMAIA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI- 379
                G+        L        R E  G N  G  +Y D+AH    ++  L  +R   
Sbjct: 293 AANHAGVSIENACATLGSFINAKRRLEVKG-NVHGITVYDDFAHHPTEIQATLTALRDKV 351

Query: 380 -TSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIV 415
             + RI+ V     +  + G        AL LAD   +
Sbjct: 352 GQNARILAVLEPRSNTMKMGVHKDEIAPALKLADAVFL 389


>gi|229493122|ref|ZP_04386914.1| FolC bifunctional protein [Rhodococcus erythropolis SK121]
 gi|229319853|gb|EEN85682.1| FolC bifunctional protein [Rhodococcus erythropolis SK121]
          Length = 479

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V +      +++D AH  +    +   +       +++ V     D+D     
Sbjct: 331 NPGRLERVRSAPT---VFLDAAHNPDGARALAAALAAEFDFRKLVGVVSVMADKDVD--- 384

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEM-- 455
            +      + D  +VT + +PR+ D E++    +   G    +      +A+  AIE+  
Sbjct: 385 AILTAFESVFDEIVVTHNGSPRAMDVEELANIAVAKFGDERVVVAPVLADALEVAIEIAE 444

Query: 456 --LNKQDVL 462
                 + +
Sbjct: 445 QVAEPGEAV 453


>gi|226307286|ref|YP_002767246.1| folylpolyglutamate synthase [Rhodococcus erythropolis PR4]
 gi|226186403|dbj|BAH34507.1| folylpolyglutamate synthase [Rhodococcus erythropolis PR4]
          Length = 479

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V +      +++D AH  +    +   +       +++ V     D+D     
Sbjct: 331 NPGRLERVRSAPT---VFLDAAHNPDGARALAAALAAEFDFRKLVGVVSVMADKDVD--- 384

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEM-- 455
            +      + D  +VT + +PR+ D E++    +   G    +      +A+  AIE+  
Sbjct: 385 AILTAFESVFDEIVVTHNGSPRAMDVEELANIAVAKFGDERVVVAPVLADALEVAIEIAE 444

Query: 456 --LNKQDVL 462
                 + +
Sbjct: 445 QVAEPGEAV 453


>gi|325048882|dbj|BAJ79308.1| putative FolC bifunctional protein [Rhodococcus erythropolis]
          Length = 479

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 14/129 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
            PGR E V +      +++D AH  +    +   +       +++ V     D+D     
Sbjct: 331 NPGRLERVRSAPT---VFLDAAHNPDGARALAAALAAEFDFRKLVGVVSVMADKDVD--- 384

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEM-- 455
            +      + D  +VT + +PR+ D E++    +   G    +      +A+  AIE+  
Sbjct: 385 AILTAFESVFDEIVVTHNGSPRAMDVEELANIAVAKFGDERVVVAPVLADALEVAIEIAE 444

Query: 456 --LNKQDVL 462
                 + +
Sbjct: 445 QVAEPGEAV 453


>gi|258508763|ref|YP_003171514.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
 gi|257148690|emb|CAR87663.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 436

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 78/246 (31%), Gaps = 13/246 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY+   +  ++A      ++       + + DD + +++  + 
Sbjct: 162 AYHPDYMIMTNIDFDHPDYYHGFEDVYDAFETEANQVQKA---IVAWGDDPWLRKLKAKV 218

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              +               +     F  PL GE  V NAL    
Sbjct: 219 PVYYYGTSDRDDFQARNVKRDTKGSSFDAYF---HDELIGHFFVPLFGEHSVLNALAVVA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D+ L+   L     V  RF     + +   I  DYAH  N ++  L   R   
Sbjct: 276 VAHMEKLDAGLIARELGNFSGVKRRF--AEKDLKDMIIVDDYAHHPNEIKATLDAARQKY 333

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-AEIIHGI 436
             + I+         R Q   P   ++    AD   +T   +   E   KIR  +I+  I
Sbjct: 334 PDKAIIAVFQPHTYSRTQAYEPQYVQVLSQ-ADQTFLTPIFSSAREKNGKIRSEDIVAQI 392

Query: 437 PGFIEK 442
            G    
Sbjct: 393 KGAAVI 398


>gi|229823042|ref|ZP_04449111.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271]
 gi|229787481|gb|EEP23595.1| hypothetical protein GCWU000282_00337 [Catonella morbi ATCC 51271]
          Length = 443

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 87/275 (31%), Gaps = 28/275 (10%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH DY  + +  F+A      +           A        +++    
Sbjct: 166 PDYAIITNVDFDHPDYFTSIEDVFSAFTSFAGQTTKAVIACGEDAY-------LRQLEAP 218

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLC 322
                        ++   +    +     ++ EGK    F  P  G+  + NAL    + 
Sbjct: 219 VPVYYYGFDSNSTVYATNIERTQDGSDFDVTFEGKFLGRFHVPTYGKHNILNALAVITVL 278

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
              G  +  + ++L     V  RF           I  DYAH  + ++  +   +     
Sbjct: 279 TLEGFPADAIAQNLATFTGVKRRFSVKTVG--DLTIIDDYAHHPSEIKATIDATKQRYPD 336

Query: 382 GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHGIPG 438
            R I VF      R         + +L+LAD   + D   + R +  E    ++   I  
Sbjct: 337 KRCIAVFQPHTFSRTVALLNEFAE-SLNLADQVYLCDIFNSAREQSGEVTIQDLAALIDQ 395

Query: 439 FIEKGNRIEAIRTAIEMLNK-----QDVLVVAGKG 468
            +E  +         E L+       DV+V  G G
Sbjct: 396 EVEIIS--------SEHLSPLMQYKDDVIVFMGAG 422


>gi|153951655|ref|YP_001398096.1| hypothetical protein JJD26997_0986 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939101|gb|ABS43842.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 313

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++AG+ F        D    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKAGFAFF-----NNDEKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QAI +GA AI+  +  +++D             V+N  + L  F            L  
Sbjct: 48  VQAIEKGAYAIITENDITIEDKE------IFYFRVENLEQALVRFLRFFCEDKECEFLLF 101


>gi|254283890|ref|ZP_04958858.1| folylpolyglutamate synthase [gamma proteobacterium NOR51-B]
 gi|219680093|gb|EED36442.1| folylpolyglutamate synthase [gamma proteobacterium NOR51-B]
          Length = 409

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 99/381 (25%), Gaps = 23/381 (6%)

Query: 99  RKFLSLFASRLYGKHPEN-ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + +   A  L  + P    L V GT+GK SV +      + +G S         I    
Sbjct: 26  LERVGAVADALELRPPRCSTLTVAGTNGKGSVVAVTAAGLRAAGHSVGVYTSPHLIDFNE 85

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSV----EASSHGLDQHRLDGIKLIAGSFTNLG 213
           +      P P     A      +    +S+     A+   L   R   +          G
Sbjct: 86  RIVIDDKPVPDEALLAAFEEIERSRGDISLSYFEFATLAALWLFRRASVDWQVLEVGLGG 145

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           R              A +        +       A       + +R              
Sbjct: 146 RLDAVNILDPDI---AVITSIGLDHTEWLGPTREAIAPEKAGIARRGKPVVVLETDPPDS 202

Query: 274 -----GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
                       K                       P        N   A       G+ 
Sbjct: 203 LAESLESMGADIKWRGRDWTMSAEQVHLCDGGQVALPDIDGLLSDNIGGALQALSLAGVV 262

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVV 387
               +        VPGR +       G  + +D AH   S+E ++ ++ ++  G R + +
Sbjct: 263 IDAPMLDELASVRVPGRRQRRHWK--GHEVLLDVAHNLESVEAMVASLESLPGGERTLAL 320

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           F    D+       M        D   + D  + PR+  P  I A +   I       + 
Sbjct: 321 FAAMADKPIH---AMLNACAGCFDRWFLPDLAEQPRAMKPADIAALMPEVIS--TCFDDF 375

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            +A       L   D L+V G
Sbjct: 376 DDAWSAVTAALVPGDRLIVFG 396


>gi|239618104|ref|YP_002941426.1| FolC bifunctional protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506935|gb|ACR80422.1| FolC bifunctional protein [Kosmotoga olearia TBF 19.5.1]
          Length = 443

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 9/109 (8%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRP 400
            PGRFE +       +I +D AH  +    +  ++     G ++ ++FG   D+D     
Sbjct: 301 WPGRFEVLTHK--NRKIILDGAHNIDGAYALRNSLEIYFPGQKLDIIFGSLDDKDYE--- 355

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRA--EIIHGIPGFIEKGNRI 446
            +  I   ++   +VT   + RS +PE++R   ++ HG   FI + +R 
Sbjct: 356 SVISILAPISGKVVVTKVPSHRSINPERVREIWKVYHGNVEFITEPDRA 404


>gi|119477390|ref|ZP_01617581.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
 gi|119449316|gb|EAW30555.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
          Length = 456

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 102/309 (33%), Gaps = 28/309 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LA  GT GK++ +S +  I + +G+   + IG        +     ++   I   
Sbjct: 101 QDRWVLAAAGTHGKTTTSSMLAWILEYAGMSPGYLIGGIPANFGVSARLGESSFFVIEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    +                 +       NL  DH D      A    + 
Sbjct: 161 EYDSAFFDKRSKFI---------------HYRPRTAILNNLEFDHADIFDDLPAIQR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                L+P+    I+ A+D    EV+ +   +G    ++          +       +  
Sbjct: 205 HHLVRLIPRNGRIIVPANDQNITEVIGQGLWSGLEKTTLRDSITADWCARALVSDGSEFD 264

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +       +  +   G+  + N + A      +G+   +  E L +   V  R E +G 
Sbjct: 265 VLLKGVVVGNVKWDHSGDHNLCNGISAIAAARHVGVTPEIAAEALCQFEGVKRRMELLG- 323

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG------KI 405
             RG  +Y D+AH   ++E  L  +R    G  I        R    R  MG       +
Sbjct: 324 KPRGIAVYDDFAHHPTAIETTLAGLRAKVGGEKITAVIEP--RSNTMR--MGAHLDKLAM 379

Query: 406 ALDLADIAI 414
           A  LAD  I
Sbjct: 380 ATQLADEVI 388


>gi|325856410|ref|ZP_08172126.1| bifunctional protein FolC [Prevotella denticola CRIS 18C-A]
 gi|325483594|gb|EGC86566.1| bifunctional protein FolC [Prevotella denticola CRIS 18C-A]
          Length = 428

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 5/152 (3%)

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                    +  ++  +      +    G             +  D  H +   + + + 
Sbjct: 268 AAMLLYNKGVIRNTDSIARGFADVCEATGLMGRWQKLQDRPLVICDTGHNAGGWQYLSRQ 327

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           IR        +VFG   D+D      M             T  + R   P +  A    G
Sbjct: 328 IRHQPCRCRRIVFGMVDDKDLHAVMSMLPDDATY----YWTQPSTRRAFPAEKVAATAAG 383

Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       EA R A+   +K D + V G
Sbjct: 384 YGLHGETFPTVPEAYRAALHAADKDDFIFVGG 415


>gi|313672019|ref|YP_004050130.1| folc bifunctional protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312938775|gb|ADR17967.1| FolC bifunctional protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 372

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 111/370 (30%), Gaps = 39/370 (10%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R  +++F + +  K    ++ + GT+GK S A F+ Q+  +    +         S   +
Sbjct: 20  RIRMAVFDAAIDLKKLGKVIHIAGTNGKGSTAFFITQMLHKQNFKTALYTSPHIESITER 79

Query: 159 DNRLTTPSPIYLAKALSY-LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI 217
                      L       +      +      +  L   ++        +    G    
Sbjct: 80  IKLNLNDITEELFDETFQTMKPLVSKYRLTFFEALTLIAFKIFADFNPDFTILETGMGGR 139

Query: 218 DYHQTQ-QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
                           + ++        I    D     V         +          
Sbjct: 140 LDATNIVDEKIPVITSISQDHSEFLGKNIYQITDEKLAIVKDNNPVFVGKNPEF------ 193

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
             L +  +     +  ISV+ +D     P P  +    A       +   +         
Sbjct: 194 --LMEYISKKLDGKRIISVQLRDDRSSLPEPYSYNFNLAKNVVSYLVNKDVSFDDYKLP- 250

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
                 P R E +G         +D +H  + L   + N    T     VVF C  DR  
Sbjct: 251 ------PCRLERIGR------FILDGSHNPSGLINTISNFNADT-----VVFSCTKDRPF 293

Query: 397 GKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
            K   + K+        I+T+  DN RS + E ++ +        ++  + ++A+  +I 
Sbjct: 294 WKMIDILKVKFKN---IILTEIPDNDRSINIESVKDD------KVLKIKDPMDAVDKSIY 344

Query: 455 MLNKQDVLVV 464
           +  K D++++
Sbjct: 345 ISGKSDIIII 354


>gi|312973951|ref|ZP_07788122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|310331485|gb|EFP98741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1827-70]
          Length = 323

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 79/272 (29%), Gaps = 22/272 (8%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     NL  DH D     +A            L +  P         +   +K+ 
Sbjct: 41  HYCPRTLILNNLEFDHADIFDDLKAIQ-----KQFHHLVRIVPGQGRIIWPENDINLKQT 95

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC         +     K       +   +    K  +  + L GE  ++N L+A  
Sbjct: 96  MAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIA 155

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
               +G+  A     L        R E  G  + G  +Y D+AH   ++   L  +R   
Sbjct: 156 AARHVGVAPADAANALGSFINARRRLELRG-EANGVTVYDDFAHHPTAILATLAALRGKV 214

Query: 381 SG--RIIVVFGCGGDRDQGKRPIMGKIALDL------ADIAIVTDDNPRSEDPEKIRAEI 432
            G  RII V        +     MG    DL      AD   +      +  P ++    
Sbjct: 215 GGTARIIAVLEP-----RSNTMKMGICKDDLAPSLGRADEVFLLQP---AHIPWQVAEVA 266

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +      G+        ++     D ++V
Sbjct: 267 EACVQPAHWSGDVDTLADMVVKTAQPGDHILV 298


>gi|152968673|ref|YP_001333782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330012009|ref|ZP_08307226.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
 gi|150953522|gb|ABR75552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328533998|gb|EGF60650.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
          Length = 438

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGVEIVGDIE--------LFCREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L      L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDTDREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTCVVNADD 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A     +   +R  + G  V       +               + +  E        PL 
Sbjct: 216 ALTMPVRGADERCISFGVDVGDYHLNRQQGETW----------LRVKGEKVLNVKEMPLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+ V  ++    I    A    
Sbjct: 266 GQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRFQLVLDHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  ++    G + ++ G  G   D    KR + G       D   +        +
Sbjct: 326 STEAALNGLQL--DGTLYLLLGGDGKSADFTPLKRYLGG-------DRIRLYCFGRDGAE 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+       ++     +A+R    ++   D++++
Sbjct: 377 LAELRPEV------AVQTETMEQAMRQIAPLVKAGDMVLL 410


>gi|108758952|ref|YP_630922.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Myxococcus xanthus DK 1622]
 gi|108462832|gb|ABF88017.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Myxococcus xanthus DK 1622]
          Length = 410

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 8/128 (6%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKR 399
             PGR E VG       + +D AH    +E++L +++ +  GR   +VFG  GD+D   R
Sbjct: 266 CWPGRLEEVGQQPI---LLLDGAHNPAGVEVLLASLKDLYPGRRLHLVFGVVGDKD---R 319

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
             M +  L       +T  + PRS  PE   AE            +   A+  A +    
Sbjct: 320 GPMMRALLPECASVQLTPLETPRSLAPEAYLAEARALCADVTAWPDADAALAAARKRAAA 379

Query: 459 QDVLVVAG 466
            D+++  G
Sbjct: 380 NDLVLCTG 387


>gi|328952239|ref|YP_004369573.1| UDP-N-acetylmuramate [Desulfobacca acetoxidans DSM 11109]
 gi|328452563|gb|AEB08392.1| UDP-N-acetylmuramate [Desulfobacca acetoxidans DSM 11109]
          Length = 514

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 120/365 (32%), Gaps = 34/365 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                L V+GT GK++ +S +  +   +GL    +     + +F  + R+     + L  
Sbjct: 150 QDRQALVVSGTHGKTTTSSLLAWLLFAAGLDPGFM-IGGIVRNFNANYRVGQGPYVVLEG 208

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        +                      T++  DH D ++       A   
Sbjct: 209 DEYDTAFFDKRPKFLLF-------------HPRMAILTSVEFDHADIYRDLTHVAQA-FT 254

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F   LP +   + + D    ++V  +A               F   + +          
Sbjct: 255 TFVSQLPPDGELLAWGDAPLVRQVASQASCQVAYYGLNS--DAFWQGRNLTPKGAGMNFD 312

Query: 293 ISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +  +G+ ++ F  PL G   V N L A  +   +G+D   + E L     V  R E VG 
Sbjct: 313 VHRQGRFWESFYVPLAGRHNVLNTLAALAVLNDLGVDRRSLKEALPDFVGVKRRLEVVG- 371

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI----AL 407
           +  G  +  D+AH   ++   L   R    GR   +      R    R  + +     AL
Sbjct: 372 DVAGVTVVDDFAHHPTAVAETLLAARGRFPGRR--LLTAFEPRTNTSRRRIFQSDYVNAL 429

Query: 408 DLADIAIVTD--------DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             AD+ +V +        ++ R     ++ A++           +    +   I      
Sbjct: 430 AAADLILVREPPDLWKAPEDDRF-SSAQLVADLNRQGRPAWYFPDTDTLLAALIAKAEPG 488

Query: 460 DVLVV 464
           DV++V
Sbjct: 489 DVVLV 493


>gi|325270780|ref|ZP_08137371.1| tetrahydrofolate synthase [Prevotella multiformis DSM 16608]
 gi|324986896|gb|EGC18888.1| tetrahydrofolate synthase [Prevotella multiformis DSM 16608]
          Length = 428

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 5/152 (3%)

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
                    +  ++  +      +    G             +  D  H +   + + + 
Sbjct: 268 AAMLLYNKGVIRNTDSIARGFADVCEATGLMGRWQKLQDRPLVICDTGHNAGGWQYLSRQ 327

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           IR        +VFG   D+D      M             T  + R   P +  A    G
Sbjct: 328 IRHQPCRCRRIVFGMVDDKDLHAVMSMLPDDAAY----YWTQPSTRRAFPAEKVAATAAG 383

Query: 436 IP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       EA R A+   +K D + V G
Sbjct: 384 YGLHGETFPTVPEAYRAALHAADKDDFIFVGG 415


>gi|312143936|ref|YP_003995382.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904587|gb|ADQ15028.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 453

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 126/410 (30%), Gaps = 40/410 (9%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA+ IV +SA    +       N  I +++      +   + L     +  +A+ GT GK
Sbjct: 64  GADLIVKTSAIPENNPEINAAQNNRIKIIER-----AEMLAYLMRN--KKTIAIAGTHGK 116

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++  + +  I   +      +     +     +               S  S        
Sbjct: 117 TTTTAMLASIMTAADKDPAIM-VGGYLEDIKGNISDGKGEYFITEADESDGSFLYFD--- 172

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
                                  TNL  DH DY++    +  A  + F +   K++  + 
Sbjct: 173 -----------------PYLLLLTNLELDHPDYYKDLAEFK-AIFKRFADKNEKKALVLY 214

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             DD   K++ K         L                         +   K        
Sbjct: 215 NGDDKNLKDLFKNRKKTKAFSLKNYDYSVKNISYDKNKSSFDFYQADNFLMKI---NLSS 271

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD-YAHT 365
            GE+ +YNA  A    + + I++  + + L+    V  RFE     + G    VD YAH 
Sbjct: 272 AGEYNIYNAAAAVSTALELDIETKFIKKALKTFKGVGRRFELKAKINNGTVDVVDDYAHH 331

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
              ++ +LK ++ +   RI  VF         K       +   AD   +TD    SE  
Sbjct: 332 PTEIKALLKAVKQMGYSRITAVFQPHRFSRTKKFLKEFSYSFVDADFVYLTDIFSASEQY 391

Query: 426 EKIR------AEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           ++         EI            +  +      E L   ++++  G G
Sbjct: 392 KETISMEKFSQEIEKHSNTEVKYLADFDKIALQLKENLISGEIILTIGAG 441


>gi|261253806|ref|ZP_05946379.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
 gi|260937197|gb|EEX93186.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
          Length = 486

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 124/407 (30%), Gaps = 46/407 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           A + ++       +  I VV   R+   L+      +G      +AV GT GK++  + V
Sbjct: 90  AINEENPEIIAARSARIPVV---RRAEMLAELMRFRHG------IAVAGTHGKTTTTALV 140

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
            QI   +GL    +     + S   + RL +   +      S  S               
Sbjct: 141 TQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------------ 187

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   ++ +    TN+  DH+D +             F   LP    AI+  DD   
Sbjct: 188 --------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCVDDPVV 239

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           +E++ +                 I   +      K    I     D D    +PG     
Sbjct: 240 RELIPKISRQVITYGFSDDADVRIANYRQDGQQGKFT-VIRQGKADLDITLNIPGRHNAL 298

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLE 370
           NA  A  +     I    +L  +        RF+ +G    G     +  DY H    ++
Sbjct: 299 NASAAIAVATEDDIADEAILSAMAGTQGTGRRFDHLGEFDTGNGQAMLVDDYGHHPTEVD 358

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP--- 425
           + ++  R     + +V+        + +        +     D+ I+ D     E P   
Sbjct: 359 VTIQAARNGWEDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYSAGEKPIAG 417

Query: 426 ---EKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
                +   I              +A+   +   L   D+++  G G
Sbjct: 418 ADGRALCRTIRSRGKLDPIFVPESKALPAVLANVLQDGDLVLTQGAG 464


>gi|325982970|ref|YP_004295372.1| UDP-N-acetylmuramate [Nitrosomonas sp. AL212]
 gi|325532489|gb|ADZ27210.1| UDP-N-acetylmuramate [Nitrosomonas sp. AL212]
          Length = 464

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 111/359 (30%), Gaps = 27/359 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSF--QIGPTSTISSFAQDNRLTTPSPIYLAK 172
             +LAV GT GK++ +S +  I   +GL+      G        A+   + +  P     
Sbjct: 103 RWVLAVAGTHGKTTTSSMLAWILDYAGLNPGFLIGGIPENFGLSARIGIIRSEHPQDSES 162

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + +S   V       ++    + +            N+  DH D      A    +  
Sbjct: 163 NSAEISPFFVIEADEYDTAFFDKRSKFVHYHPRTAILNNIEYDHADIFPDLSAIKR-QFH 221

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F  ++P     I    D   K V+ +                         + N     
Sbjct: 222 HFVRIIPNNGLIIANGKDENIKHVLAQGCWTPLEEFGTETD------WNAQLLANNAIDI 275

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              +       + L GE    NAL A       G+     +  L +   V  R E  G  
Sbjct: 276 YFDQIHQGCLHWDLLGEHNRMNALAALIAARHAGVPVETGIAALSEFKSVKRRMEKRG-T 334

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPIMG------KI 405
             G  +Y D+AH   +++  L  +RT     RII V        +     MG        
Sbjct: 335 VNGVTVYDDFAHHPTAIQTTLNGLRTHVGQKRIIAVLEP-----RSNTMKMGVWKDYLAH 389

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +L  AD          + D +  ++ +           +  + I+  + +   +D +++
Sbjct: 390 SLQEADHVFC-----FTRDSQWAKSTLRTLNNRVDYCDDLNQLIQNIVAITKPEDHVLI 443


>gi|254821552|ref|ZP_05226553.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium
           intracellulare ATCC 13950]
          Length = 492

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 50/195 (25%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +  E +       +PG     NA+ A    + IG     VL+ L     V  RFE VG
Sbjct: 281 PDLDPEQRPRVMRLSVPGRHMALNAMGALLAALEIGAPVDAVLDGLAGFEGVRRRFELVG 340

Query: 351 TNSRGGRI--YVDYAHTSNSLEMILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMG 403
           T   G  +  + DYAH    +   L  +RT+      GR I VF      R +      G
Sbjct: 341 TAGNGQPVRVFDDYAHHPTEIVATLAAVRTLLEQSGDGRSIAVFQPHLYSRTKAFAEEFG 400

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA----------I 453
             ALD AD   V D     E P       + G+ G     +    +R             
Sbjct: 401 H-ALDAADEVFVLDVYGAREQP-------LAGVSGASVAEHVSVPVRYLPNFSAAAEQVA 452

Query: 454 EMLNKQDVLVVAGKG 468
            +    DV+V  G G
Sbjct: 453 AVAGPGDVIVTMGAG 467


>gi|117619646|ref|YP_858325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561053|gb|ABK38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 427

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 127/398 (31%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IV S   +L        +   + +V +              +    ++A+TG++GKS
Sbjct: 58  AHMIVASPGIALATPELQAAAEFGVRIVGDIE--------LFVREAQVPVIAITGSNGKS 109

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +GL     G   T               + L         Q +    +
Sbjct: 110 TVTTLVGEMIAEAGLKVGVGGNIGTP-------------ALEL-------LKQPMDLCVL 149

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A    NL  DH+D +Q    Y  AKM + +            
Sbjct: 150 ELSSFQLET--THSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQHSQHILIN---- 203

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                       A             G   +    C +  +  +T+  E         + 
Sbjct: 204 ---------RDDAQTLPDVGQVWQSFGLDCNGYGRCELDGRHWLTLHGEPLLAVDEMKIV 254

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  LC A+GI     L  L +   +P R  FV   +    I    A    
Sbjct: 255 GAHNQANALAAMALCDAVGIPREPQLRVLRRFEGLPHRARFVREVNGVRWINDSKATNVG 314

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +  +R    GR++++ G  G + Q   P+   +   + D           +D E 
Sbjct: 315 ATLAAVAGVRESVKGRLLLLAGGQG-KGQDFGPVQALLGSQI-DHMYC-----FGQDAEV 367

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           + A +        +    +     A       D +++A
Sbjct: 368 LLA-LGEQTERVADLDAAV---AKAAADARPGDWVLLA 401


>gi|307264124|ref|ZP_07545719.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306870540|gb|EFN02289.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 439

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 152 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSGGCILSAAA 210

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 211 DENVQNTLKMGSYSELQF----IGEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGA 266

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G   +G  +Y D+AH   ++
Sbjct: 267 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVKGITVYDDFAHHPTAI 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  LAD     V   +    
Sbjct: 326 AATIDALRGKVGKEQRILAVLEPRSNTMK---MGVHKEEIAPSLADANAVFVYQPDTIPW 382

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 383 AVSVITDNLTQPAKWS---ADLDELVKMIVEEAKPTDHILV 420


>gi|304437326|ref|ZP_07397285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369582|gb|EFM23248.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 469

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 14/278 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS+ ++            +  N+  DHI  H + + Y  A           E   ++ 
Sbjct: 178 EISSYQMEA--TTHFHAHIVAELNITPDHIVRHGSMEVYQ-AMKEKLFAAQTAEDYLVLN 234

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD +++ + +RA   G   L    +                +   +           +P
Sbjct: 235 ADDPHTRGMAERAA--GRVCLFSRREELAEGACVRADGMIVIRWDGAEHVLIPADELGIP 292

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A+ + +  G+  A +   L     V  R EFV   +         A  ++
Sbjct: 293 GAHNVENVLAASAMALFAGVTPAEMRPVLRAFKGVEHRIEFVRALAGVSYYNDSKATNTD 352

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L+           ++   GGD          ++     D  I+  D         
Sbjct: 353 SAIKALEAFDGH------IILIAGGDDKLTDLGEFMELVHARVDELILVGDAAERFAAAA 406

Query: 428 IRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV 464
             A I          G +  +A+  A E+  +  ++++
Sbjct: 407 RDAGIPE--EQIHRVGYHMEKAVHLARELAVEGQIVLL 442


>gi|255326226|ref|ZP_05367312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296680|gb|EET76011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 528

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 122/419 (29%), Gaps = 58/419 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V S                 I +  +    L+   +   G      L +TGT+GK++ 
Sbjct: 115 LVVTSPGVRPDHQVMLDAYERRIQIWGDVE--LAWRLNERSGLPTPKWLCLTGTNGKTTT 172

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              V  + + +G  S Q+G                          +    +     +VE 
Sbjct: 173 VGMVDSVLKAAGKKSIQVGNVGMP------------------IVYAIADDEPYEFFAVEL 214

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L       +   A    N+  DH+D+H + + Y   K R++E           + D
Sbjct: 215 SSFQLHW--THSMSPYASVVLNIAEDHVDWHGSFERYKADKARVYEHTQVACIFNTDHVD 272

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF--------- 300
                E       A     S         L     I   +    +   + +         
Sbjct: 273 TLRMVENADVIEGARAIGFSSTEMPAVSMLGLAEDIMVDRAFLKNRYNEAYELAVLEDLA 332

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +P +  V NAL AA LC A  ID   V   L        R + VG  +    +  
Sbjct: 333 PAPGKMPAKHTVENALAAAALCRAADIDPKAVGAGLRSFKTGAHRNQLVGYANDIMWVND 392

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A   ++    +    ++      V    G  +      ++   A  L  + I+  D  
Sbjct: 393 SKATNPHAANASMSGYPSL------VWIAGGLSKGVEYDELIVAHAQRLKAVLIIGTDT- 445

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT-----AIEML---------NKQDVLVVA 465
                  +++ + +  P      N   A+       A+            +  D +++A
Sbjct: 446 -----AALKSALANHAPQVPTY-NMTAAVADSSDGVAVMNAAVAKAAELAHPGDTVLMA 498


>gi|229552566|ref|ZP_04441291.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314118|gb|EEN80091.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus
           LMS2-1]
 gi|259650069|dbj|BAI42231.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 437

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 78/246 (31%), Gaps = 13/246 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY+   +  ++A      ++       + + DD + +++  + 
Sbjct: 163 AYHPDYMIMTNIDFDHPDYYHGFEDVYDAFETEANQVQKA---IVAWGDDPWLRKLKAKV 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                              +               +     F  PL GE  V NAL    
Sbjct: 220 PVYYYGTSDRDDFQARNVKRDTKGSSFDAYF---HDELIGHFFVPLFGEHSVLNALAVVA 276

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D+ L+   L     V  RF     + +   I  DYAH  N ++  L   R   
Sbjct: 277 VAHMEKLDAGLIARELGNFSGVKRRF--AEKDLKDMIIVDDYAHHPNEIKATLDAARQKY 334

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKIR-AEIIHGI 436
             + I+         R Q   P   ++    AD   +T   +   E   KIR  +I+  I
Sbjct: 335 PDKAIIAVFQPHTYSRTQAYEPQYVQVLSQ-ADQTFLTPIFSSAREKNGKIRSEDIVAQI 393

Query: 437 PGFIEK 442
            G    
Sbjct: 394 KGAAVI 399


>gi|229543492|ref|ZP_04432552.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
 gi|229327912|gb|EEN93587.1| UDP-N-acetylmuramate/alanine ligase [Bacillus coagulans 36D1]
          Length = 437

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 106/351 (30%), Gaps = 49/351 (13%)

Query: 71  IVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++  +A+    ++    ++   P++      KFL  F            +AVTG  GK+S
Sbjct: 64  VIAGNAFPDTHEEIDEAMKRGIPVIR---YHKFLGEFLKNFTS------VAVTGAHGKTS 114

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
               +  +      +S+ IG  +       +            +   +  S    +  + 
Sbjct: 115 TTGLLAHVMHEIKPTSYLIGDGTGKGVPGAEY-----FVFEACEYRRHFLSYHPDYAIM- 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                                TN+  DH DY+      F+A     E  L  +   I Y 
Sbjct: 169 ---------------------TNIDFDHPDYYANIDDVFSAFQ---EMALQVKKGIIAYG 204

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD     + K                 F     V      +   +        F  P  G
Sbjct: 205 DDEQ---LQKIQAKVPVVFYGFEEGNDFQARNIVTEPQGTKFDVVVRNNFYGTFEIPSFG 261

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL    LC   GI+   V  HL+  H V  RF           I  DYAH    
Sbjct: 262 NHNVLNALGVIALCQYEGIEKEAVETHLKTFHGVKRRF--TEKEIGTQIIIDDYAHHPTE 319

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD 417
           ++  +   R     R +V         + +   + + A   +LAD   + D
Sbjct: 320 IKATIDAARKKYPERELVAVFQPHTFSRTQ-AFLTEFAESLNLADRVFLCD 369


>gi|29653494|ref|NP_819186.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 493]
 gi|154707034|ref|YP_001425281.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161830659|ref|YP_001596104.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 331]
 gi|44888196|sp|Q83F17|MURC_COXBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029010|sp|A9KER2|MURC_COXBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029011|sp|A9NA45|MURC_COXBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29540756|gb|AAO89700.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 493]
 gi|154356320|gb|ABS77782.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161762526|gb|ABX78168.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 331]
          Length = 465

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 124/429 (28%), Gaps = 47/429 (10%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
             DG      AI Q A+  V SSA    +          I              + L  +
Sbjct: 59  NHDG-----TAITQ-ADCAVYSSAIGATNPELMAAKQAKI-----PLLKRGEMLANLMKE 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +    +AV G  GK++ +  +      + L          +++     R+          
Sbjct: 108 Y--QSIAVAGAHGKTTTSGMLSHAFVEANLD-PTFMVGGVLNNSQTPARVGNG-----HY 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++       + + +                      TN+  DH+  +            
Sbjct: 160 FIAEADESDASFLFM---------------HPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F E   ++   ++  DD   +E+                    +       I +  Q+ 
Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIAPLLSRRVITYGFSSDAQYRVVDYCQQGIQSLFQIH 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        +PG+    NA     +   + ++   +L+ L     V  RF   G  
Sbjct: 265 SPQRKAPLTVKLSMPGQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRFTIRGEM 324

Query: 353 SRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  +   DY H  N ++  L   R     R + V      R    R +M +    L
Sbjct: 325 ILPKGNALIIEDYGHHPNEIKATLAAARAAWPERRM-VLVFQPHRYSRTRDLMTEFVSVL 383

Query: 410 A--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQD 460
           A  D  ++ +     E P        +   + +G+         ++ +  T  ++    D
Sbjct: 384 AETDWLVLLEVYSAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPND 443

Query: 461 VLVVAGKGH 469
           ++++ G G+
Sbjct: 444 IIILQGAGN 452


>gi|256027425|ref|ZP_05441259.1| UDP-N-acetylmuramate--alanine ligase [Fusobacterium sp. D11]
          Length = 460

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 131/393 (33%), Gaps = 43/393 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +   +   N  I     T        ++L  +  E  +AV GT G
Sbjct: 59  KGSDYVIASTAIKENNPELSYAKNNGI-----TLLKRGELLAKLLNR--ETGIAVAGTHG 111

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +           A +  S      +
Sbjct: 112 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGK------SEYFIAEADESDNSFLFM 165

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + S                   TN+  DH+D H        + ++       ++   I
Sbjct: 166 YPKYS-----------------VITNIDADHLDVHGNLDNIKKSFIKFICH--TQKEAII 206

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
               +     V K          S+  +   I+ K +  +  K    + +  +   +F  
Sbjct: 207 CMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSL 266

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---------VGTNSRG 355
            +PGE  + N+L    L +  G+    + E L        R++           G  ++ 
Sbjct: 267 NIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTKR 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            RI  DYAH    ++  LK I++I   R++V+F               K A    D  I+
Sbjct: 327 VRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVIL 386

Query: 416 TDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIE 447
                  E  E  I +EI+          N  E
Sbjct: 387 LPIYAAGEKNEFNISSEILKEHINHNNVENMNE 419


>gi|213420152|ref|ZP_03353218.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 336

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 76/282 (26%), Gaps = 22/282 (7%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              +LAV GT GK++ A     I +  G      G          +         +    
Sbjct: 48  DRWVLAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFEVSARLGESPFFVIE 104

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 105 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 148

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +    
Sbjct: 149 QFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDTSEWEVW 208

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  D  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 209 LDGEKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG-EA 267

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGD 393
            G  +Y D+AH   ++   L  +R    G  RII V     +
Sbjct: 268 NGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEPRSN 309


>gi|120437102|ref|YP_862788.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
 gi|189028993|sp|A0M526|MURC_GRAFK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117579252|emb|CAL67721.1| UDP-N-acetylmuramate--L-alanine ligase [Gramella forsetii KT0803]
          Length = 452

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 62/203 (30%), Gaps = 15/203 (7%)

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   + +          +    +      F LPG   + NA+ A  + I  G    
Sbjct: 237 NDNSDFSAQNIRIEEGSYVFDLKTPSETIKNLKFNLPGNHNLLNAITALAMAIEYGTSIH 296

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +   L     V  RF           +  DYAH    +  + + +R +   + ++    
Sbjct: 297 DLTRALYSFKGVKRRF-SYKIKKDHLVLIDDYAHHPTEISAVHQAVREMYPNKKVLAVFQ 355

Query: 391 GG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEK 442
                R +           D  D   + D  P  E P +      +  +I +     I+K
Sbjct: 356 PHLFSRTRDFAEDFASSLSDF-DKVFLLDIYPARELPIEGISSAWLLDKISNTNKALIQK 414

Query: 443 GNRIEAIRT----AIEMLNKQDV 461
            N  E I+T     + M+   D+
Sbjct: 415 KNLSEMIKTEEAEVVVMMGAGDI 437


>gi|269137993|ref|YP_003294693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|267983653|gb|ACY83482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|304558040|gb|ADM40704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Edwardsiella tarda
           FL6-60]
          Length = 438

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 125/397 (31%), Gaps = 52/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S    L   +    +   + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIPLSSPALDRAAQAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L                +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGVP-------------ALSL-------LKHECRLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH++ +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYENARTCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           + VG         ++          +  E         L 
Sbjct: 213 ADDALTMPIHGADTRCVSFGVDVGDYHLNRQQGEIWL-------RVRGEKILNTKEMQLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+G+  A  L  L     +  RF+ V  +S    I    A    
Sbjct: 266 GMHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRFQLVLEHSGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E     ++ +     + +   G  +D    P++  +     D   +      +E   +
Sbjct: 326 STEA---ALKGLHLDGTLHLLLGGDGKDADFTPLLPYL---QGDRIRLYCFGRDAEPLMR 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +R E+              +AIR    +    D++++
Sbjct: 380 LRPEVSR------RFDTLEQAIRALAPLTRGGDMVLL 410


>gi|223889325|ref|ZP_03623912.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
 gi|223885246|gb|EEF56349.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 60/417 (14%), Positives = 129/417 (30%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+       + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +   +  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A    +   L K    II 
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEA-FLQYINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +DD    ++ ++ +     + S G              +           ++VE K   F
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSEYFCFSFLGLLNVELKTVLF 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L     +    +          D    ++ + K +    R   V     G     DY
Sbjct: 286 HNVLNFSAALLALNLFLESNGRSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIV----- 415
           AH    ++  L  I+     + I++        R +       ++    ADI I+     
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSA-ADILILHNIYL 404

Query: 416 ---TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               D NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNREDFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|194476888|ref|YP_002049067.1| UDP-N-acetylmuramate--alanine ligase [Paulinella chromatophora]
 gi|171191895|gb|ACB42857.1| UDP-N-acetylmuramate--alanine ligase [Paulinella chromatophora]
          Length = 470

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 131/426 (30%), Gaps = 66/426 (15%)

Query: 70  AIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            ++ S+A S  +    A  R+   +    +    L          + +  +AV G+ GK+
Sbjct: 77  IVITSTAVSELNAELVAARRAGLEVFHRSDVLAAL---------INRQLSIAVAGSHGKT 127

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           + ++ +      S                        P+ I      +   +      ++
Sbjct: 128 TTSTLIATFLSNSNHD---------------------PTAIIGGILPAIGCNGYGGMGNL 166

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
             +        L   +   G  TNL  DH ++         AK R     +   +     
Sbjct: 167 LVAEVDESDGSLVKFRASLGIITNLELDHTNH--------YAKFRDLITTMQYFASGCSR 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPL 306
                   V++    A     +  Y+G       V    +   V    +G+    F  PL
Sbjct: 219 LLANRDCPVLRDYFTAQEWWSNEIYEGVKFAGIPVSLKGDHTLVDFYEDGELMCRFELPL 278

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + N   A   C   G++   +  +L KL     RF++ G   +   I  DYAH  
Sbjct: 279 PGLHNLSNITAAVASCRLQGLNLDRLTINLVKLKPPSRRFDYCG-TWKSRIIVDDYAHHP 337

Query: 367 NSLEMILKNIRTITSG----------RIIVVFGCGGDRDQGKRPIMGK---IALDLADIA 413
           + ++  L   R +             R+I VF         +     +   +AL  AD  
Sbjct: 338 SEVKATLGMARLMVQSHSGPLPQSPLRLIAVFQPHR---YTRTAEFLESFAMALVNADQI 394

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIPGFI--EKGNRIEAIRTAIEMLNKQDVLVVA 465
           ++       E P        + + I    P  I     N  + I+         D++++ 
Sbjct: 395 LIAPIYSAGEKPIPGISNATLASVIERIRPDLITLVANNYTQLIQQMESFTQPGDLILMM 454

Query: 466 GKGHET 471
           G G   
Sbjct: 455 GAGDMN 460


>gi|4204102|gb|AAD10535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           coelicolor A3(2)]
          Length = 221

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 19/168 (11%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
             P    + NAL AAGL  A G+ +A V + L        R   V        +    A 
Sbjct: 38  NPPAPHNIANALAAAGLARAFGVSAAAVRDGLRAFTPDAHRIAHVADVDGVAYVDDSKAT 97

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
            +++ E  L    +      IV    G  +      ++   A  L    ++        D
Sbjct: 98  NTHATEASLAAYES------IVWIAGGLAKGATFDELVAGAAKRLRGAVLI------GAD 145

Query: 425 PEKIRAEIIHGIPGFIEKG-NRIE------AIRTAIEMLNKQDVLVVA 465
              IR  +    P       +R +      A++ A  +    D +++A
Sbjct: 146 RALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLA 193


>gi|171463722|ref|YP_001797835.1| FolC bifunctional protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193260|gb|ACB44221.1| FolC bifunctional protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 411

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 115/394 (29%), Gaps = 44/394 (11%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--------------- 151
           + L       ++ + GT+GK S  +F++ I   SG                         
Sbjct: 11  AALDLHFDCPVITIAGTNGKGSTCAFLESILLASGYRVGCHTSPHLLQFNERARINGEDV 70

Query: 152 ------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGI 202
                    +  ++ R++      L        +           +  L+     RLD +
Sbjct: 71  KDNILLEHFAAVENARVSLVDAPTLTYFEFTTLAIMHLFARSNLDAVVLEVGMGGRLDAV 130

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            ++      +    ID+         A       +      A+          +     N
Sbjct: 131 NIVDADCAIVTSIDIDHADFLGGTREAIGLEKAGIFRPGHIAVCGDPVPPQSLI----DN 186

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           A      +  QG+  + +                G  +  L            + A    
Sbjct: 187 AEKLGCDLWLQGRDYNFQGDKQQWGWAGRNKRFSGLGYPALRGANQILNASAVIAALMAL 246

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
                 SA  + +   L  +PGRF+ +        + +D AH  ++   + + +  +   
Sbjct: 247 HQRLPVSAQDIRNGFALVELPGRFQVLPGQPT---VVLDVAHNPHAAATLAQGLDKMGYH 303

Query: 383 RI-IVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH------ 434
                +FG   D+D      + K  L++ D    TD   PR+   E +  ++        
Sbjct: 304 PYTYAIFGAMADKDIEG---VIKPLLNIVDFWFCTDLPTPRAASAEALAEKLESMGVKPK 360

Query: 435 -GIPGFIEK-GNRIEAIRTAIEMLNKQDVLVVAG 466
            G  G IE       A + A+ +  + D +V  G
Sbjct: 361 NGADGGIECFPEPTLAYQKALSLAGEGDRIVTFG 394


>gi|148980589|ref|ZP_01816136.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
 gi|145961172|gb|EDK26488.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrionales bacterium
           SWAT-3]
          Length = 486

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 122/382 (31%), Gaps = 47/382 (12%)

Query: 64  IAQGAEAIVVSSAYSLQDFS-----ATIRSNTPILV------VDNTRKF--LSLFASRLY 110
           +++GA   +   A ++ D S       I    P ++          R+   L+      +
Sbjct: 64  VSKGATVYIGHQASNVADASVVVVSTAINEENPEIIAAREARTPIVRRAEMLAELMRFRH 123

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           G      +AV GT GK++  + V QI   +GL    +     + S   + RL +   +  
Sbjct: 124 G------IAVAGTHGKTTTTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRIL-- 174

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A +  S     H+    S                   TN+  DH+D +          
Sbjct: 175 -IAEADESDASFLHLQPMVS-----------------IVTNIEADHMDTYGGDFETLKQT 216

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
              F   LP    A++  DD   +E++ +                 I    V      + 
Sbjct: 217 FIDFLHNLPFYGQAVMCVDDPVVRELIPQVSRQVITYGFSEDADIRIENY-VQEGQQGKF 275

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
             +     + D    +PG     NA  A  +     I    +L+ +        RF+ +G
Sbjct: 276 TVVREGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTEGTGRRFDHLG 335

Query: 351 TNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKI 405
               G     +  DY H    +++ ++  R+  + + +V+        + +        +
Sbjct: 336 EYETGNGVAMLVDDYGHHPTEVDVTIQAARSGWADKRLVMIFQPHRYSRTRDLYDDFANV 395

Query: 406 ALDLADIAIVTDDNPRSEDPEK 427
                D+ I+ D     E P  
Sbjct: 396 LEQ-VDVLILLDVYSAGEKPIA 416


>gi|307131841|ref|YP_003883857.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Dickeya dadantii 3937]
 gi|306529370|gb|ADM99300.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Dickeya dadantii 3937]
          Length = 422

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 12/126 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V   S    + +D AH  ++   +   +  +   GR+  V G   D+D    P 
Sbjct: 287 PGRFQIV---SEKPLLILDVAHNPHAAAYLAARLADLPHAGRVRAVIGMLADKDI---PG 340

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
                    D+      + PR  D   +       +       +   A R A++   + D
Sbjct: 341 TLAHLKPQVDVWYCAPLEGPRGADAGLLA----THLESCTSFPDVATAWRQAMQDAGEDD 396

Query: 461 VLVVAG 466
           V++V G
Sbjct: 397 VVIVCG 402


>gi|227513376|ref|ZP_03943425.1| folylpolyglutamate synthase [Lactobacillus buchneri ATCC 11577]
 gi|227083249|gb|EEI18561.1| folylpolyglutamate synthase [Lactobacillus buchneri ATCC 11577]
          Length = 445

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 95/301 (31%), Gaps = 15/301 (4%)

Query: 177 LSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           +      HV       GL  +    + +     S                    A  +  
Sbjct: 128 MLYFADLHVDYVVLECGLGGELDATNAVFNTMYSIFTKISLDHVGILGNNITEIATTKSK 187

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
                  + +  +      + + K AH+     L+       + L+   +       + +
Sbjct: 188 IIRQNNVTISAQHQPGEAFRVLEKEAHSKNATFLTANQTVISMILQTPKSTRVHYVNSQN 247

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV------PGRFEF 348
            E +   F F L   +Q+ N        I       LV    + L         PGRFE 
Sbjct: 248 DEHQSGTFNFGLVATYQLENLATVITWLIDFLNRKKLVYNLNQLLEDTLLNIVVPGRFEK 307

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK-IAL 407
               S+   I +D  H  + ++  +K + T+      ++      +D+     + + I+L
Sbjct: 308 ---ISQQPVIILDGGHNPDGIQAFVKTVNTLYPDSEKLIINGF-LKDKSYESSVKELISL 363

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVA 465
             A   I   D+ + E P +  +++   +    +    +  +AI+ A+       ++ V 
Sbjct: 364 KNASFIITEPDDKQRELPPQQLSDVYVKLTKQTYQSFDSPTDAIQYAVSHATANTIIFVI 423

Query: 466 G 466
           G
Sbjct: 424 G 424


>gi|294501560|ref|YP_003565260.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551]
 gi|295706908|ref|YP_003599983.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319]
 gi|294351497|gb|ADE71826.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium QM B1551]
 gi|294804567|gb|ADF41633.1| UDP-N-acetylmuramate--alanine ligase [Bacillus megaterium DSM 319]
          Length = 433

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 117/406 (28%), Gaps = 40/406 (9%)

Query: 71  IVVSSAYSLQDFSA------TIRSNTPILV---VDNTRKFLSLFASRLYGKHPENILAVT 121
           I    A   Q           I+    ++      +T + ++  AS+  G          
Sbjct: 37  IFTQKALEQQGIPVLPFDKNNIKDGMTVIAGNAFPDTHEEIAEAASK-EGVKLVRYHRFL 95

Query: 122 GTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQG 181
           G   K   +  V     ++  +             +      T   +  +K  ++ + + 
Sbjct: 96  GDFMKQYTSVAVTGAHGKTSTTGMLAHVIQGAEPTSYLIGDGTGKGVKDSKYFAFEACEY 155

Query: 182 VTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKE 241
             H       + +               TN+  DH DY       F+A     E  L  +
Sbjct: 156 RRHFLSYTPDYAI--------------MTNIDFDHPDYFANIDDVFSAFQ---EMALQVK 198

Query: 242 SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD 301
              I   DD + +++  +          +G +  F     V +                 
Sbjct: 199 KGIIACGDDEHLQQIQAKV---PVLYYGLGEENDFQARNIVKSTTGTTFDVFVRNTFHAS 255

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F  P  G+  + NAL    LC    ID A++ E  +    V  RF     N     +  D
Sbjct: 256 FEIPGYGDHNILNALSVIALCHYEEIDVAVLQERFKTYQGVKRRF--SEKNVGKQVLIDD 313

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTD--D 418
           YAH    +   +   R     R +V         + +  +    A    AD   + D   
Sbjct: 314 YAHHPTEINATISAARQKYPNREVVAVFQPHTFTRTQTFLEDFAASLQHADKVYLCDIFG 373

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + R    +    ++   I G        E I +  +     + ++V
Sbjct: 374 SAREHQGKLSIEDLRSKISGAELIN--EETIESLKDH---NEAVLV 414


>gi|269792559|ref|YP_003317463.1| FolC bifunctional protein [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100194|gb|ACZ19181.1| FolC bifunctional protein [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 433

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 94/274 (34%), Gaps = 23/274 (8%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
            +       +G DH +Y  +   +  A+             A     D   +  ++R   
Sbjct: 158 MVECVVCAPIGLDHREYLGSTVRHVAAEKMAVIRPGKPAVFAGDPGGDGLEEMFLERCAK 217

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G + +    + +   L+        ++   SVE + F  L  L   +    AL A    
Sbjct: 218 VGAKPVIHSRECRVELLQMSLGGCRFRRTRGSVEEELFIPLAGLHQPYNGSLALTALEEI 277

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
                 S   +         PGR E          + +D AH  + + +++ +++ I + 
Sbjct: 278 SDRFPLSRSAMVEGLSKVTWPGRME-WIPLDGSRGVILDGAHNPHGMRVLVDSLKRIQNP 336

Query: 383 R-IIVVFGCGGDRDQG---------KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI 432
               VVF   GD+D           K P+       LA  A V       E    + +++
Sbjct: 337 EGTAVVFAAMGDKDLEGTLGILGELKSPLFVTTVPGLARSATV-------EVLSSLASKL 389

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             GIP      + +EA++ A+++      +VV G
Sbjct: 390 --GIPLAGSNPDPMEAVKMALDV---GPTVVVCG 418


>gi|258512187|ref|YP_003185621.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478913|gb|ACV59232.1| FolC bifunctional protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 465

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 17/146 (11%)

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-----SGRIIVVFGCGGDRDQGKR 399
           R + V        + +D A  + S   + +   T        GR+ +V     D+D    
Sbjct: 314 RLQRVRREPD---VVIDGAIHALSAAYVRRFAETWRAAREGRGRVHLVLSLPDDKDADG- 369

Query: 400 PIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            +M ++A  LAD  + T   N        + A           + N  +AIR A+   ++
Sbjct: 370 -VMRELA-PLADRILFTETTNSALHFTRDLVALAATLGYAASHEANPHDAIRAALAEASR 427

Query: 459 QDVLVVAGKGHETVHIVTNGEKKMSV 484
            D++++ G              +   
Sbjct: 428 DDLVLLVG-----TQSFVGDALRHFD 448


>gi|227517916|ref|ZP_03947965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX0104]
 gi|227074670|gb|EEI12633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX0104]
          Length = 456

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWSIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D       +       +  +              A     ++  + E         +
Sbjct: 218 -AEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +A + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALQGLKAIVLF-------GETKE 385

Query: 427 KIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|94969647|ref|YP_591695.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551697|gb|ABF41621.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 126/405 (31%), Gaps = 38/405 (9%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV +A S  +       +  I         ++    R +  H   ++A+ GT GK++ 
Sbjct: 67  LVVVGNAISRGNVELEYVLDRRI-----PFTSMAELLHREF-LHDREVIAIAGTHGKTTT 120

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S +  I   +G   SF IG  +     +          I                   +
Sbjct: 121 TSMLSWIFHHAGRNPSFLIGGIAENFGSSFAVADGAEFIIE---------GDEYDTAFFD 171

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                L           +   T +  DH D ++       A  RL   +           
Sbjct: 172 KGPKFLHY------FPKSLILTAVEFDHADIYKDLDEVKTAFKRLVNLVPRSGCILAWDG 225

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
                + V K              +  +  +    A        +        F FP+ G
Sbjct: 226 HPNVDECVTKAFC--KVERYGFTARADWRIVDVEHAPEKTSWRVLRNGEPWAHFEFPIAG 283

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
           ++ V NA  AA +     ID+  + E L     V  R E      +G  I  D+AH   +
Sbjct: 284 DYNVLNATAAAAMAAHYAIDTDAIAEALHHFKSVKRRLEV-KAEVKGITIIDDFAHHPTA 342

Query: 369 LEMILKNIRTITSGRI-IVVFGCGGD---RDQGKRPIMGKIALDLADIAIVT-----DDN 419
           +   LK +R+  +GR    V     +   R+  +  ++  +   +AD  ++      +  
Sbjct: 343 IAETLKALRSRYAGRRLWAVLEPRSNTLRRNVFQHELVQSL--RIADRVVLAATFKSEAI 400

Query: 420 PRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           P  E  DP  + AE+           +  + +      L   DV+
Sbjct: 401 PEKERLDPANVVAELNQLGTPAELHASADKIVAAIAPQLAAGDVV 445


>gi|24375298|ref|NP_719341.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella oneidensis MR-1]
 gi|24350105|gb|AAN56785.1|AE015814_5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella oneidensis MR-1]
          Length = 465

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 105/355 (29%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A    + 
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQK-QF 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P +   I  AD    K+ +     +           K  H K +      +  
Sbjct: 208 HHQIRTVPGQGKVIWPADSHAVKQTIDMGCWSEQETYHSSEVTKGWHAKALS-DDCHEFE 266

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                       + L G+  + NA++A      +G+  +  ++ L +      R E +  
Sbjct: 267 VFFDGQSQGVLDWALIGQHNIENAVMAIAAARHVGVAPSAAIDALARFVPPKRRLELL-D 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G  +Y D+AH   ++   +K +R       I +                 +A  +  
Sbjct: 326 TVNGVSVYDDFAHHPTAIATTIKGMRAKVGQTKITIVLEPRSNTMKSGVHKDTLAHSMLQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + ++     +  +    +  +    +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVAASAKPGDTIVV 437


>gi|312148369|gb|ADQ31028.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi JD1]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 130/417 (31%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+       + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +  ++  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAMAGISNIFIVETCEYKNHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A    +   L K    II 
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEA-FLKYINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +DD    ++ ++ +     + S G              +           ++VE K   F
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSEYFCFSFLGLLNVELKTVLF 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L     +    +          D    ++ + K +    R   V     G     DY
Sbjct: 286 HNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-- 418
           AH    ++  L  I+     + I++        R +       ++    ADI I+ +   
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSA-ADILILHNIYL 404

Query: 419 ------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNRENFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|260558074|ref|ZP_05830285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii ATCC 19606]
 gi|260408428|gb|EEX01735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii ATCC 19606]
 gi|322506212|gb|ADX01666.1| L-alanyl-gamma-D- glutamyl-meso- diaminopimelate ligase
           (UDP-N-acetylmuramate) [Acinetobacter baumannii 1656-2]
          Length = 457

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 89/282 (31%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +GT + G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTIN-GIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADEVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIEAATNHAQVSRSLDEIIDRIVNEAGEGDAVVI 435


>gi|53803321|ref|YP_114904.1| folylpolyglutamate synthase/dihydrofolate synthase [Methylococcus
           capsulatus str. Bath]
 gi|53757082|gb|AAU91373.1| folylpolyglutamate synthase/dihydrofolate synthase [Methylococcus
           capsulatus str. Bath]
          Length = 431

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 104/374 (27%), Gaps = 36/374 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT+GK S  + +  I +R+G           +    +     TP  +  A   +  
Sbjct: 45  ITVGGTNGKGSCVAALDTILRRAGYRVGAYTSPHILRYNERICIDGTP--VDDAAICASF 102

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                       S    +   L  + +   +  ++    +       A            
Sbjct: 103 ERIEAVRGDTTLSFF--EFGTLAAMDIFRRAELDVQILEVGLGGRLDAVNIVDADAALVA 160

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF----IHLKKVCAIHNKQQVTI 293
                          +  + K       R   +G          H + + A    Q    
Sbjct: 161 SIGIDHEEWLGLTREAIGLEKAGIFRPARPCILGDPDAPATVLRHAEAIGADLLMQGRDF 220

Query: 294 SVEGKDFDFLF------------PLPGEFQVYNALVAAGLCIAIGID----SALVLEHLE 337
           S   ++  + +            P       Y  + A    I             +    
Sbjct: 221 SFRRENDGWTWYGRGETHAALPEPCLRGDHQYFNMAAVLQVIEAIRPRLPVPEAAVRAGL 280

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQ 396
               +PGRF+          + +D AH  +++ ++ + +R    GR +  VF    D+D 
Sbjct: 281 ASVHLPGRFQIQEGEPT---VLLDVAHNPHAVRVLAEFLRQFKRGRPVHAVFAMMRDKDI 337

Query: 397 GKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH--GIPGFIE-KGNRIEAIRTA 452
                + +   DL D   +     PR+  PE I   +    GI    +   +  E     
Sbjct: 338 ---RGVVECIRDLVDDWYLAPLQLPRAATPE-ILLPVFSALGISQVQQGFADAAEVFARV 393

Query: 453 IEMLNKQDVLVVAG 466
                   +++V G
Sbjct: 394 RRNAENDSIILVFG 407


>gi|330878232|gb|EGH12381.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 434

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 102/373 (27%), Gaps = 21/373 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPARRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY-------------LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              ++                 G            LD   L+          NL    + 
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFERAQLDAVVLEVGLGGRLDAVNLIDSDLA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FI 277
              +        +    E +  E   I  A                 +   +G       
Sbjct: 158 LVTSIGVDHTEYLGDTRESVAFEKAGIFRAGCPALCGDPSPPEPLLTKARELGCPLLLRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +    +         G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGDDSWDWRGVAHGEQVELRGLPLLDLPMQNAALALQAFALLGYPLQTDAIGQV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +       G ++ +  D  H  ++   + + + R    G+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVRWHGKQLNLLLDVGHNPHAAHFLQQRLARRPVPGKRFAVFGLLND 337

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +D     ++  +A  +AD A+      R    E++ + + +         +  +A+    
Sbjct: 338 KDLDG--VVAHLAPAIADWAVTPLSTSRGRPAEELHSALQNLGARVTSYQSVAQALDAQC 395

Query: 454 EMLNKQDVLVVAG 466
                 D +++ G
Sbjct: 396 AHATPDDEILLFG 408


>gi|325578131|ref|ZP_08148266.1| dihydrofolate:folylpolyglutamate synthetase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159867|gb|EGC71996.1| dihydrofolate:folylpolyglutamate synthetase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 438

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 52/386 (13%), Positives = 119/386 (30%), Gaps = 37/386 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS--TISSFAQDNRLTTPSPIY 169
                ++ V GT+GK +    ++ I    GL             +   +      P  ++
Sbjct: 46  NPAPYVITVGGTNGKGTTCRLLETILLNYGLRVGVYSSPHLLRYNERVRIQNQDLPDEMH 105

Query: 170 LAKALSYLSSQGVTHVSVEASS-HGLDQ----------------HRLDGIKLIAGS---F 209
            A        +  +    E S+   L                   RLD   ++       
Sbjct: 106 TASFDFIEKHKTQSLTYFEFSTLSALHLFKQAKLDVVILEVGLGGRLDATNIVDNDLAVI 165

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           T++  DH D+  + +   + +                       ++  K   +   R ++
Sbjct: 166 TSIDIDHTDFLGSTREEISFEKAGIFRANKPVVIGEPNVPRPMLEQAEKLHCHVSRRDVN 225

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
             ++               + +                 E   ++  V       I ++ 
Sbjct: 226 WSFKANEQTWMWQSNKVRLENLPFCQIPLANAATALAAVEQWPFDISVDTIKRSLIEVEL 285

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM---ILKNIRTITSGRIIV 386
               + L+   +           S+  ++ +D  H  ++ +     L  ++T  SGRII 
Sbjct: 286 VGRFQQLKGYLLEKLADRLNVPYSQLPKVIIDVGHNPHAAKYLAEKLIALKTQISGRIIA 345

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIA----IVTDDNPRSEDPEKIRAEIIHGIPGF--I 440
           V G   D+D         +   L  +      VT    R +  + + A++    P    +
Sbjct: 346 VCGMLKDKDAE------SVFSQLTSVIDQWHCVTLGGYRGQSGDDLNAKLTTVCPSAKSV 399

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
            + +  E +++A++  +K D+++V G
Sbjct: 400 SEDSVAEGVQSAVKNADKNDIVLVFG 425


>gi|320109284|ref|YP_004184874.1| FolC bifunctional protein [Terriglobus saanensis SP1PR4]
 gi|319927805|gb|ADV84880.1| FolC bifunctional protein [Terriglobus saanensis SP1PR4]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 22/190 (11%)

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID----SALVLEHLEKLHVVPG 344
              ++ V  +D     PL G  Q  N  +A    +A+       S   +    +    PG
Sbjct: 257 NHYSVRVRNEDLAVDSPLAGSHQQRNIALAIATAVALDAKGITISNAAIAEGIRTTAWPG 316

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R + +    +G  + +D AH       +   +     G   +VF    D+       M +
Sbjct: 317 RLQRL--TLQGRDVLMDVAHNPAGAWALRSYLSNTFQGPQTLVFSSLADKAV---AEMAQ 371

Query: 405 IALDLAD----IAIVT-DDNPR---SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           I   L +      ++   +NPR   +E    I  E+           +   A+  A+   
Sbjct: 372 ILFPLFEEEGGRILLAPMNNPRAATAEQLSSIATELD---TKAEVFADVASAMTAALSY- 427

Query: 457 NKQDVLVVAG 466
                +VVAG
Sbjct: 428 GPG-TIVVAG 436


>gi|213971669|ref|ZP_03399776.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tomato T1]
 gi|301386522|ref|ZP_07234940.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060556|ref|ZP_07252097.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tomato K40]
 gi|302134662|ref|ZP_07260652.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923554|gb|EEB57142.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tomato T1]
          Length = 434

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 103/373 (27%), Gaps = 21/373 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPARRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY-------------LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              ++                 G            LD   L+          NL    + 
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFERAQLDAVVLEVGLGGRLDAVNLIDSDLA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FI 277
              +        +    E +  E   I  A                 +   +G       
Sbjct: 158 LVTSIGVDHTEYLGDTRESVAFEKAGIFRAGCPALCGDPSPPEPLLEKAHELGCPLLLRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +    +         G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGDDSWDWRGVAHGEQIELRGLPLLDLPMQNAALALQAFALLGYPLQTDAIGHV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +       G ++ +  D  H  ++   + + + R   SG+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVRWHGRQLNLLLDVGHNPHAAHFLQQRLARRPVSGKRFAVFGLLND 337

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +D     ++  +A  +AD A+      RS   E + + + +         +  +A+    
Sbjct: 338 KDLDG--VVAHLAPVIADWAVAPLSTSRSRPAEDLHSALQNLGARVTSYQSVAQALDAQC 395

Query: 454 EMLNKQDVLVVAG 466
                 D +++ G
Sbjct: 396 AHATPDDEILLFG 408


>gi|295135633|ref|YP_003586309.1| UDP-N-acetylmuramate--L-alanine ligase [Zunongwangia profunda
           SM-A87]
 gi|294983648|gb|ADF54113.1| UDP-N-acetylmuramate--L-alanine ligase [Zunongwangia profunda
           SM-A87]
          Length = 451

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 79/225 (35%), Gaps = 28/225 (12%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
              +  +       +    +  + F   LPG   V NA+ A  + +  G  +  + + L+
Sbjct: 243 AINIKILGGNYHFDLKTPTEIIEGFTLHLPGRHNVLNAVTALAMALEYGSPAEQLRDALQ 302

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
               +  RF      +    +  DYAH    ++ + + +R +      +V        + 
Sbjct: 303 SFKGIRRRF-SYKIKTDQKVLIDDYAHHPAEIKAVFEAVREMYPKMKNLVVFQPHLFSRT 361

Query: 398 KRPIMGKIALDLA--DIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEKGNRIEAI 449
            R  +   A  L+  D  ++ D  P  E P +      +  +I +     ++   R E  
Sbjct: 362 -RDFVDDFAEKLSQFDEVMLMDIYPAREKPIEGVDSQWLLEKINNPNKQLVK---REE-- 415

Query: 450 RTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILG 494
            +A  + +K  V+++ G G      + N         + ++  L 
Sbjct: 416 LSAKIITSKAKVVLMLGAG-----DIGNEV-------ETVKRALE 448


>gi|90416337|ref|ZP_01224269.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2207]
 gi|90332062|gb|EAS47276.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2207]
          Length = 485

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 116/368 (31%), Gaps = 43/368 (11%)

Query: 67  GAEAIVVSSAYSLQD--FSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTG 122
           GA  +V SSA ++++   +A      P++     R+   L+      +G      +A+ G
Sbjct: 74  GANVVVKSSAVTVENTEIAAARAQGIPVV-----RRAEMLAELMRYRHG------IAIAG 122

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S +  I    G     +     ++S   + +L                    
Sbjct: 123 THGKTTTTSLITAILAEDGRDPTFV-VGGRVNSAGTNAKLG------------GSRYLVA 169

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                +AS   L          +    TN+  DH++ +    +        F   LP   
Sbjct: 170 EADESDASFLHLQ--------PMVAVVTNIEADHMETYDFDFSRLTKTYIEFLHNLPFYG 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A++  DD   ++++                   +    V    +   +       +   
Sbjct: 222 LAVMCIDDPVIRDLLVDVARPMLTYGFSDDAAYRVRDLTVDQGRSTFVIERPDGLAELQV 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS----RGGRI 358
              +PG     NA  A  +    GI    +++ L     V  RFE  G           +
Sbjct: 282 SLNMPGRHNALNAAAAIAVASDEGISDRAIIQGLSSFSGVGRRFEIYGDYQLESGGSAML 341

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVT 416
             DY H    ++  +  +R     + +V+        R +       K+  +  D+ I+ 
Sbjct: 342 VDDYGHHPTEIKATVDAVRGGWPDKRLVMIFQPHRYTRTRDLYEDFVKVLAE-VDVLILL 400

Query: 417 DDNPRSED 424
              P  E+
Sbjct: 401 AVYPAGEE 408


>gi|329848047|ref|ZP_08263075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
 gi|328843110|gb|EGF92679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Asticcacaulis
           biprosthecum C19]
          Length = 475

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 93/283 (32%), Gaps = 22/283 (7%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           +  +   +R   ++    +A+TGT+GKS+  + +  I + +G +    G          +
Sbjct: 101 ELFARTLARFPARNRPKTVAITGTNGKSTTTALIGHILKSAGKNVHVGGNIGIGVLDLDE 160

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            +                         +E SS+ LD       K       NL  DH+D 
Sbjct: 161 MQPGA-------------------VYVIETSSYQLDLSLTF--KPDVSILMNLSPDHLDR 199

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH- 278
           H     Y  AK R+F      ++  I   DD  +  + +   +   +++++  +      
Sbjct: 200 HGGMDGYIAAKKRIFMNQEKGQTAVIGADDDYTADLISQMRVSHPVKLVAISSRRVVGDG 259

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +  +           +    D   +  L G     N   A   C A+G+ +  +   +  
Sbjct: 260 VYALNGELYDASGERARHIIDLKTVRTLTGRHNWQNGAAAFAACKALGLTNEQIAVGMRS 319

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
              +  R + +G   +   I    A  +++    + +      
Sbjct: 320 FPGLAHRMQEIGRIGKVRFINDSKATNADAARQAMSSFDKFFW 362


>gi|295092964|emb|CBK82055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprococcus sp.
           ART55/1]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 84/292 (28%), Gaps = 44/292 (15%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  NL  DH++ H T + Y N K  + +     +   +  
Sbjct: 162 EISSFQLET--VIDFHPNVSAILNLTPDHLNRHYTFENYGNVKFSITKNQTMDDVTVL-- 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D      M       C V+      K      V       +               L 
Sbjct: 218 NYDDEHTRAMGEKAKDHCHVVYFSRLEKPAGGVYVEDGDIILEDGDKKINVLAIKDLKLM 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A G+   +G+   ++ +       V  R E+V T               +
Sbjct: 278 GAHNVENVLAAVGISYYMGVPVDVIRDVATSFKAVAHRIEYVDTVDGVAYYNDSKGTNPD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP---------------IMGKIALDLADI 412
           +    ++ +   T       F  GG  D+G                  ++G+ A  +AD 
Sbjct: 338 AAIKGIQAMVAPT-------FLIGGGYDKGSEYDEWIEAFDGKVKWLVLIGQTAQKIADC 390

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                                HG    I + N  +A+    E     D +++
Sbjct: 391 ------------------AKRHGFNSIIFEENLQDAVAYCHENAVDGDAVLL 424


>gi|289765388|ref|ZP_06524766.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D11]
 gi|289716943|gb|EFD80955.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. D11]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 131/393 (33%), Gaps = 43/393 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +   +   N  I     T        ++L  +  E  +AV GT G
Sbjct: 67  KGSDYVIASTAIKENNPELSYAKNNGI-----TLLKRGELLAKLLNR--ETGIAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +           A +  S      +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGK------SEYFIAEADESDNSFLFM 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + S                   TN+  DH+D H        + ++       ++   I
Sbjct: 174 YPKYS-----------------VITNIDADHLDVHGNLDNIKKSFIKFICH--TQKEAII 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
               +     V K          S+  +   I+ K +  +  K    + +  +   +F  
Sbjct: 215 CMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSL 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---------VGTNSRG 355
            +PGE  + N+L    L +  G+    + E L        R++           G  ++ 
Sbjct: 275 NIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTKR 334

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            RI  DYAH    ++  LK I++I   R++V+F               K A    D  I+
Sbjct: 335 VRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVIL 394

Query: 416 TDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIE 447
                  E  E  I +EI+          N  E
Sbjct: 395 LPIYAAGEKNEFNISSEILKEHINHNNVENMNE 427


>gi|237743962|ref|ZP_04574443.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 7_1]
 gi|229432993|gb|EEO43205.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 7_1]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 131/393 (33%), Gaps = 43/393 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +   +   N  I     T        ++L  +  E  +AV GT G
Sbjct: 67  KGSDYVIASTAIKENNPELSYAKNNGI-----TLLKRGELLAKLLNR--ETGIAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +           A +  S      +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGK------SEYFIAEADESDNSFLFM 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + S                   TN+  DH+D H        + ++       ++   I
Sbjct: 174 YPKYS-----------------VITNIDADHLDVHGNLDNIKKSFIKFICH--TQKEAII 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
               +     V K          S+  +   I+ K +  +  K    + +  +   +F  
Sbjct: 215 CMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSL 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---------VGTNSRG 355
            +PGE  + N+L    L +  G+    + E L        R++           G  ++ 
Sbjct: 275 NIPGEHNILNSLPVIYLALKFGVSKEEIQETLHNFKGSKRRYDVLFDKDLENGYGNKTKR 334

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            RI  DYAH    ++  LK I++I   R++V+F               K A    D  I+
Sbjct: 335 VRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVIL 394

Query: 416 TDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIE 447
                  E  E  I +EI+          N  E
Sbjct: 395 LPIYAAGEKNEFNISSEILKEHINHNNVENMNE 427


>gi|260553791|ref|ZP_05826061.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Acinetobacter sp.
           RUH2624]
 gi|260405095|gb|EEW98595.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Acinetobacter sp.
           RUH2624]
          Length = 457

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 86/277 (31%), Gaps = 7/277 (2%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGHAIGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      + L     V  R E +G    G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVSLEKACDALSNFGGVKRRMELLG-TVNGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +  L   R  +   R+  +     +  + G        +  LAD  I     P   D   
Sbjct: 342 DTTLDGARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADDVI--WYQPEGLDW-D 398

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           ++  I           +  E I   +    + D +V+
Sbjct: 399 LQPVIEAASNRAQVSRSLDEIINRIVNEAGEGDAVVI 435


>gi|170023773|ref|YP_001720278.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pseudotuberculosis YPIII]
 gi|169750307|gb|ACA67825.1| FolC bifunctional protein [Yersinia pseudotuberculosis YPIII]
          Length = 434

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 23/198 (11%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-ALVLEHLEK 338
                  ++Q      +  +            + NA  A  +     +      +    +
Sbjct: 235 FDQQEPVDQQINGWHWQCDERQLTGLPVPNVPLANAATALAVLHYSELPLSDEAIRQGLQ 294

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-------SGRIIVVFGCG 391
              +PGRF+ V        + +D AH  ++   ++  +  +         G++  V G  
Sbjct: 295 AASLPGRFQVVSEQPL---LILDVAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGML 351

Query: 392 GDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            D+D       G +A   +  D       + PR         ++   +    +  +   A
Sbjct: 352 SDKDIA-----GTLACLSERVDEWYCAPLEGPRG----ASAGQLAEHLVSARQFSDVETA 402

Query: 449 IRTAIEMLNKQDVLVVAG 466
            R A++  + QDV++V G
Sbjct: 403 WRQAMQDADTQDVVIVCG 420


>gi|149377261|ref|ZP_01895008.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
 gi|149358449|gb|EDM46924.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter algicola DG893]
          Length = 481

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 6/203 (2%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +  +    TN+  DH+D +             F   LP    A++  DD + +E++ R 
Sbjct: 184 HLTPVISVVTNIEADHMDTYGGDIERLKQTFVDFLHNLPFYGVAVMCVDDGFVQEIIPRI 243

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK--DFDFLFPLPGEFQVYNALVA 318
                    +         + + +   + +  +   G   D D    +PG   V NAL A
Sbjct: 244 SR-AIITYGIDNPDADYRAENIESDGLRTRFVVRRPGGRSDLDVELKMPGRHNVQNALAA 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKN 375
             +    G+D A +   L     V  RF+  G  S       +  DY H    +E +++ 
Sbjct: 303 IAVATDEGVDDAAICRGLAGFAGVGRRFQVYGDYSTRKGTVTLIDDYGHHPTEVEAVIRA 362

Query: 376 IRTITSGRIIVVFGCGGDRDQGK 398
            R     R +V+        + +
Sbjct: 363 ARDAWPDRRLVMLYQPHRYTRTR 385


>gi|284045211|ref|YP_003395551.1| UDP-N-acetylmuramate/alanine ligase [Conexibacter woesei DSM 14684]
 gi|283949432|gb|ADB52176.1| UDP-N-acetylmuramate/alanine ligase [Conexibacter woesei DSM 14684]
          Length = 477

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 104/356 (29%), Gaps = 29/356 (8%)

Query: 51  GNKEDGHLFIPQAI-----AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF---- 101
           G    G      A+       GA   V   A ++          +  +  +N  +     
Sbjct: 33  GAAVSGSDRADSALFARLREDGATVAVGHDAANVPAGDGVEVVYSTAVPPENPERAVARE 92

Query: 102 --LSLFASR-----LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS 154
             L+          +        +AVTGT GK++ +S V    + +G+    +     + 
Sbjct: 93  RGLAELHRADLLGEITDLPGRRCIAVTGTHGKTTTSSMVVHALRGAGMDPGYL-VGGEVR 151

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
           S   +    T   + +    S  S   +       ++  LD H   G +L          
Sbjct: 152 STGSNAGWGTGEWVVVEADESDRSLLRLHPDVAVLTNAELDHHATYGSRLDVDETFRAFL 211

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
                         A   +     P+            +  V      AG    + G  G
Sbjct: 212 AK------------ASEGIVVWDRPELVALAPSGAAVGASGVAGVGGVAGVGGAADGGDG 259

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                             I  + +       +PG     NA  A   C   G D A    
Sbjct: 260 GVELAPYDVPEPLLDATGIRFDWRGIAVRLSVPGAHNALNAAAALEACRLAGADPARAAA 319

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            L        RFE +GT + G  +Y DYAH    +   +   RT+  GR++VVF  
Sbjct: 320 ALADFRGAGRRFELLGTTASGATVYDDYAHHPTEVAATVAAARTLAPGRVVVVFQP 375


>gi|56964385|ref|YP_176116.1| folylpolyglutamate synthase [Bacillus clausii KSM-K16]
 gi|56910628|dbj|BAD65155.1| folylpolyglutamate synthase [Bacillus clausii KSM-K16]
          Length = 436

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRFE          I +D AH       +   ++   S + I V       ++    +
Sbjct: 297 WPGRFEI---IQVNPPIVLDGAHNEEGFLALTAALQERFSDKNIHVL-LASTTEKDMNVL 352

Query: 402 MGKIALDLADIAI-VTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +   A    ++A   T  D  R+ + E +  +    +       +  +A++T +E L +Q
Sbjct: 353 LKPFATSGLEVAFSFTSFDFHRAANAEDLFKQ--APVKRKQVAADWRKALKTMMENLGEQ 410

Query: 460 DVLVVAG 466
           DVLVV G
Sbjct: 411 DVLVVTG 417


>gi|229543664|ref|ZP_04432724.1| FolC bifunctional protein [Bacillus coagulans 36D1]
 gi|229328084|gb|EEN93759.1| FolC bifunctional protein [Bacillus coagulans 36D1]
          Length = 440

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 17/172 (9%)

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                      +          I         LE    L    GRFE +        + +
Sbjct: 258 MMGRHQIYNAALAVMGAELLRHIHHFRIPQHALEKGLLLSKWIGRFEKL---LDDPLVII 314

Query: 361 DYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-D 418
           D AH    ++ +++ + T   G+ I ++F   GD+D      M        D  I T  D
Sbjct: 315 DGAHNPEGIDSLIETMDTHLRGKNIHMIFSALGDKDLDH---MIPKLDHKTDEIIFTTFD 371

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEK---GNRIEAIRTAIEMLN-KQDVLVVAG 466
            PR      I AE+++ I     K    +  E +   I+ +   +DVLV+ G
Sbjct: 372 FPR-----AIPAEMLYKISHHQNKSFSEDWKETVLAKIKEMKGSRDVLVITG 418


>gi|75909888|ref|YP_324184.1| folylpolyglutamate synthetase [Anabaena variabilis ATCC 29413]
 gi|75703613|gb|ABA23289.1| Folylpolyglutamate synthetase [Anabaena variabilis ATCC 29413]
          Length = 416

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              + +       PGR +    N +  ++ +D AH   S +++   + T+ +  +  V G
Sbjct: 271 EEEIINGMAKTKWPGRMQ--WINWKNHKLLIDGAHNPASAQVLRNYVDTLNTPSVTWVMG 328

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIV--TDDN--PRSEDPEKIRAEIIHGIPGFIEKGNR 445
               +D      + ++ L   D   +    DN    +E   K+  +I   +  +    + 
Sbjct: 329 MLSTKD---HADIFQVLLRPNDQLYLVPVPDNNSADTEYLGKLACDICPELSTYQTCPDL 385

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A+ TA    +  +++V+ G
Sbjct: 386 KLALETAFN--STDNLVVLCG 404


>gi|16272091|ref|NP_438293.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae Rd KW20]
 gi|260581285|ref|ZP_05849102.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae RdAW]
 gi|1176353|sp|P43948|MPL_HAEIN RecName: Full=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase; AltName: Full=Murein peptide
           ligase
 gi|1573076|gb|AAC21795.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092034|gb|EEW75980.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae RdAW]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 75/267 (28%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +      S +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDDIAPALGRADAVFMLQPEQLSWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAKAQPTDHILV 433


>gi|115522143|ref|YP_779054.1| FolC bifunctional protein [Rhodopseudomonas palustris BisA53]
 gi|115516090|gb|ABJ04074.1| FolC bifunctional protein [Rhodopseudomonas palustris BisA53]
          Length = 438

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRP 400
            PGR E V          VD  HT + +   L +++ I      ++V G   D+      
Sbjct: 293 WPGRLEVVRQ---DPLTVVDVGHTPDGIAQALGSLKAIHGADDWVLVLGVSRDKQSD--- 346

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRT--AIEML 456
            +  +     D  + +    + ED EKI        P           +A++   A+ + 
Sbjct: 347 EIVALLAPAFDRIVCSAAYHKGEDAEKIAQAARRANPAADIHVAATIEDAVKQSTALAIA 406

Query: 457 NK 458
             
Sbjct: 407 ES 408


>gi|331701261|ref|YP_004398220.1| FolC bifunctional protein [Lactobacillus buchneri NRRL B-30929]
 gi|329128604|gb|AEB73157.1| FolC bifunctional protein [Lactobacillus buchneri NRRL B-30929]
          Length = 443

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 69/223 (30%), Gaps = 16/223 (7%)

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +    + A  +   +   G+   +      +  Q+   S        L          +
Sbjct: 206 PLKVIVNQAEHKQSPIQILGQNFKVNDRGEHNWNQEFDFSSADFQLHDLKTALIGDYQTH 265

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               A                +  +          GRFE     S    I +D AH  ++
Sbjct: 266 NAALAIQAYIDYHQLTKRAVDVRNIQKGIAATRWAGRFEK---ISTKPTIVLDGAHNISA 322

Query: 369 LEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT----DDNPRSE 423
           + +I+  ++     G I ++ G   D+   K         + +   I+T         + 
Sbjct: 323 VNLIVDTLQNDFPQGHIYILMGILADKQADKMVDKMATVQNAS--IILTRFAGPGKRLAA 380

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +PEK+ +++           +  +AIR     L   D+L++ G
Sbjct: 381 NPEKLESQLKTQPENVSAIDDWQDAIRELRRKLTPDDMLLITG 423


>gi|326559628|gb|EGE10042.1| bifunctional protein FolC [Moraxella catarrhalis 7169]
 gi|326567693|gb|EGE17799.1| bifunctional protein FolC [Moraxella catarrhalis BC1]
          Length = 442

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 107/389 (27%), Gaps = 56/389 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---------- 167
             V GT+GK S    +  IC+  GL +        +S   +                   
Sbjct: 53  FTVAGTNGKGSTTKTIAAICEACGLKTALYQSPHLVSFTERICINGNEISESDLVAAFEA 112

Query: 168 ---------IYLAKALSYLSSQGVTHVSVEASSHGLDQH------RLDGIKLIAGSFTNL 212
                    + L+       +        +     L+         ++ I       TN+
Sbjct: 113 VENARVAKNVTLSFFEMTTLAAFWHFNQKKCDVWVLEIGLGGRLDVVNIINPDVAVITNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G DH+D+          +                         ++               
Sbjct: 173 GIDHVDWLGDDIERIGQEKAGIIR--------------ENIPVILGARQLPNSVHELANR 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K +H   V   + +Q  T            P P           A +  +        
Sbjct: 219 LTKHVHQLGVNYDYMEQDETWIFSNAALTIQLPKPKLSLQNAVNAVAAVLESGIKIHLDS 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--------RI 384
           +        + GRF+    N        D AH S+ +   L                 ++
Sbjct: 279 VIDGLHQVQLAGRFDQRIIN--DRHWIFDVAHNSHGISFFLAQWADEWHKHKKIYPDAKL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD-----LADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            V+F   GD+D      + K ALD     + D ++   ++PR+ D + +   +   I   
Sbjct: 337 KVIFSMLGDKDVDAVLEVIKAALDDKKISIHDWSVAAINHPRAMDLQTLLDHVHTHIQPS 396

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 +  +A ++     + QD++VV G
Sbjct: 397 NLKIYQDLAQAAQSVSTDASTQDLIVVFG 425


>gi|296122916|ref|YP_003630694.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
 gi|296015256|gb|ADG68495.1| cyanophycin synthetase [Planctomyces limnophilus DSM 3776]
          Length = 871

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 117/376 (31%), Gaps = 32/376 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + VTG +GK++ +  V  I +++G+          +    +D  +          A + L
Sbjct: 480 VCVTGVNGKTTTSRLVASILRQAGIKVGVATSDGIV---VEDRVIELGDCAGPKSARAVL 536

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--AYFNAKMRLFE 235
            +  V    +EA   G+ +  L   K      TNL                  +  R   
Sbjct: 537 LNPTVEAAVLEAGRGGILREGLGFDKCDVAVVTNLSEPDHLGEYDIHTVEKMYSVKRTPV 596

Query: 236 ELLPKESPAIIYADDAYSKEV-----------MKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           +++     A++ A D +  ++            +              +           
Sbjct: 597 DVVMPGGFAVLNAADPWVAKMSTLSAGGVIFFARDERQPVLSQHRSEGKKVVFVRDGWIV 656

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH---- 340
             +    +  V   D          FQ+ N L A      + I  + +   L+       
Sbjct: 657 AGDGGLSSQIVRLADVPCTHGGRIGFQIDNVLAATAAAWGLKIPFSAIAAGLQHFQGNLA 716

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGRF        G  + V  A   ++L+  +  +   +S R +VV+    DR      
Sbjct: 717 DDPGRFNVFQLG--GKTLIVVDARNPSALKATIAGLEAFSSQRKLVVYAAENDRIHSDIT 774

Query: 401 IMGKIALDLADIAIV-------TD--DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
             G++  +      +       T   D PR      IRA           + +  +A+  
Sbjct: 775 QQGELLAEHFQNFYLYHLPGCATTGADAPRELLLASIRATADSEKLCVNLEEDWQKAVDA 834

Query: 452 AIEMLNKQDVLVV-AG 466
           A     + DVL++ AG
Sbjct: 835 AWHDFREGDVLLIQAG 850


>gi|295101464|emb|CBK99009.1| folylpolyglutamate synthase/dihydrofolate synthase
           [Faecalibacterium prausnitzii L2-6]
          Length = 424

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 9/127 (7%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRP 400
            PGRFE +  +       +D +H ++ +   ++++R      + I +     D+D     
Sbjct: 287 WPGRFELLRHSPA---FLLDGSHNAHGMRATVQSLRDRFPGQKFIFLLSIMADKDVD--- 340

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M  + L LA   + V    PR+   E +   I           +    +  A+E+    
Sbjct: 341 EMLALLLPLAKRFVTVAAHTPRAMPAETLAEHIRVRGGKAEAAADIPAGVARAVEL-GGD 399

Query: 460 DVLVVAG 466
           D +   G
Sbjct: 400 DPVCALG 406


>gi|183179413|ref|ZP_02957624.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MZO-3]
 gi|183012824|gb|EDT88124.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio cholerae
           MZO-3]
          Length = 421

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 112/367 (30%), Gaps = 20/367 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I  ++G S         I    +           L 
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLQAGYSVGVYSSPHLIRYNERVRINAQDLADELH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                   Q    VS+     G    L   +   + ++       GR             
Sbjct: 106 TQAFAHIEQECGDVSLSLFEFGTLAALYLFQQQKVDVLLLEVGLGGRLDATNVVDHDVSV 165

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
              + L          A+I  + A      K A     +  +           K+  +  
Sbjct: 166 ITSLALDHTDWLGNDIAVIGYEKAGIFRSGKPAICGQPKPPATVAAHADDIGAKLHQVEI 225

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNAL----VAAGLCIAIGIDSALVLEHLEKLHVVP 343
           +     + E                  +L     A  L         +    + +     
Sbjct: 226 QFSYEKTSETTWHWRSGRFELTDLPVPSLPLPNAATALMALGCSGLEISDLDVVEGLRHA 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIM 402
                +   SR   I +D AH  +S   +++ ++     ++I +V G   D+D      +
Sbjct: 286 QLAGRMQVISREPTIVLDVAHNPHSAHYLVEQLKQRYPQQVIHLVLGMLHDKD------I 339

Query: 403 GKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQ 459
               ++L    +VT   P S          ++   +P G I+  N + A   A+  ++ Q
Sbjct: 340 ASTVMEL--NPVVTHWYPASLSGPRAATAEQLCQYLPAGNIQYANPVVAFEAALTQVSAQ 397

Query: 460 DVLVVAG 466
           DV+VVAG
Sbjct: 398 DVIVVAG 404


>gi|242373469|ref|ZP_04819043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348832|gb|EES40434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
          Length = 449

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 122/355 (34%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+AVTGT+GK++V S +  + ++S L+    G    ++S                   
Sbjct: 111 APIIAVTGTNGKTTVTSLIGDMFKKSVLTGRLSGNIGYVASKV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
               ++   ++  E SS  L    ++  K      TN+   H+DYH+T + Y NAK +++
Sbjct: 154 -AQEARPDEYLITELSSFQLL--GIEKYKPHIAIITNIYSAHLDYHETLENYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++  +     +     Q       K   I       I+
Sbjct: 211 KNQTKDDYLICNY----HQRHLIESENLKAKTMYFSTQQEVDGIYIKDGFIVYNGIRIIN 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           V+         L        A       I  G+    +++ L     +  R +++GTN  
Sbjct: 267 VKDLVLPGEHNLENILAAVLA------AILAGVPVKAIVDSLTTFSGIDHRLQYIGTNRT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L + +       I+    G DR                D  I
Sbjct: 321 NKYYNDSKATNTLATQFALNSFKQ-----PIIWLCGGLDRGNDF------------DELI 363

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +N R      E  EK            I+  +  +A+    E++   DV+++
Sbjct: 364 PYMNNVRIMVVFGETQEKFAKLGNSQGKYVIKATDVEDAVDKIQEVIEPNDVVLL 418


>gi|167614196|gb|ABZ89700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 441

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 112/349 (32%), Gaps = 47/349 (13%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +++TGT+GKS+VA+ V++I ++SG      G          + ++               
Sbjct: 109 ISITGTNGKSTVATMVEKIAKKSGYKVCLGGNIGVPILNMLNQKV--------------- 153

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS  L+      +K       N+  DHI+ +               + 
Sbjct: 154 -----DFYILELSSFQLE--NTFTLKSKIAVVLNISEDHINRYP-----------EGFKQ 195

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
             K   ++    +     V  + H+      S  Y             +N + V +S + 
Sbjct: 196 YKKIKLSLYQRAEICIVNVKNKLHDVIQTNKSKKYITFGTQNSDYQVHYNHKNVILSRKN 255

Query: 298 KDFDFLFPLPGE--FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           K    +            NALVA  +  +I      ++  L+K   +P R + +      
Sbjct: 256 KKILDISQTLLWGAHNHQNALVALAISDSIKCPRHCIITTLQKFSSLPHRLQIIHRKKGI 315

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I    +   NS ++ L ++ T  + R       GGD       I+             
Sbjct: 316 DWINDSKSTNVNSTKVALNSLNTSGTIR----LLLGGDSKSANFNILKDDFEKFKIKIYC 371

Query: 416 TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +   ++  +I           I      +A++  I+     D +++
Sbjct: 372 FGKD--GKNISQICK------KKSIYFDTLQQAMKLIIKEAISGDTVLL 412


>gi|241766372|ref|ZP_04764255.1| FolC bifunctional protein [Acidovorax delafieldii 2AN]
 gi|241363480|gb|EER58947.1| FolC bifunctional protein [Acidovorax delafieldii 2AN]
          Length = 441

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 97/345 (28%), Gaps = 28/345 (8%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A+R+  +    ++ V GT+GK S  + ++ + Q++G  +        +    +     
Sbjct: 32  EVATRMDLRFDCPVITVAGTNGKGSTCAMLEAVAQQAGYRTGVYTSPHLVHFEERCRVHG 91

Query: 164 ----------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL------IAG 207
                         +  A+ L+              +   L  H L  + +         
Sbjct: 92  EAVNAADLIAHFEAVESARTLNGNEVSLTYFEFTTLAILRLLSHSLLDVAILEVGLGGRL 151

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNA 263
             TN+         +        +    E + +E   I+                   +A
Sbjct: 152 DATNVIDADCAIITSIDIDHTEYLGPDRESIGREKAGIMRTGRPVVVSDPMAPQSVVDHA 211

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                 +   G   +        +         G  +  L            L A     
Sbjct: 212 REIGADLWRFGHDFNFSGDKQQWSWAGRGRRYAGLAYPALRGANQLVNASGVLAAFEALR 271

Query: 324 AIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSG 382
                +A  + +   L  +PGRF+ V        + +D AH  +S+  +  N+  +    
Sbjct: 272 TRLPVTAQAVRNGMALVELPGRFQIVPGQ---PTLVLDVAHNPHSVAALTANLDAMGYFP 328

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPE 426
               VFG   D+D      M      L D    TD   PR+E   
Sbjct: 329 VTHAVFGAMADKDL---APMLAKVGSLVDHWYFTDLPTPRAETAA 370


>gi|163841982|ref|YP_001626387.1| dihydrofolate synthase [Renibacterium salmoninarum ATCC 33209]
 gi|162955458|gb|ABY24973.1| folylpolyglutamate synthase [Renibacterium salmoninarum ATCC 33209]
          Length = 451

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGK--- 398
           PGR E V T      + VD AH    +++ +  I    +  ++++V G   ++D  +   
Sbjct: 306 PGRLEVVRTAPT---VIVDAAHNPAGIKVTVAAIDEAFSFSKLVLVIGILREKDALEILT 362

Query: 399 --RPIMGKIALDLADIAIVTDDN-PRSEDPEKIRA-EIIHGIP--GFIEKGNRIEAIRTA 452
             R  +G+ A ++     +T  N PR+    ++    +  G             +A+  A
Sbjct: 363 QLRASLGENAEEIC----LTQSNSPRAIPAGELAELALDAGFEEENVHIAEKLDDALEWA 418

Query: 453 IEMLNKQD----VLVVAG 466
           ++     D     ++V G
Sbjct: 419 VQRAEANDDLAGGVLVTG 436


>gi|327534579|gb|AEA93413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis OG1RF]
          Length = 456

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            ADD       +       +  +              A     ++  + E         +
Sbjct: 218 -ADDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|325510630|gb|ADZ22266.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           EA 2018]
          Length = 458

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 3/188 (1%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+DY++      N   +    +  +         D      +     
Sbjct: 178 YPYIGVILNIDADHLDYYKNIDDIENTFAKFVNLIPKEGYLIA--NADDKRVARVASNAT 235

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +                             F+    +PG+  + NAL A    
Sbjct: 236 CNVVSFGIDNGDIRAKNISFNESGFSSFDVYKSSELLFNIKLNVPGKHNILNALSAIASA 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + + I    +++ L+       RFE  G  + G  +  DYAH    ++  L   +     
Sbjct: 296 LTLKISHKSIIDGLKSFKGTHRRFEIKGVKN-GITVIDDYAHHPTEIKATLDAAKNYPHN 354

Query: 383 RIIVVFGC 390
           +I  VF  
Sbjct: 355 KIYCVFQP 362


>gi|153207176|ref|ZP_01945955.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918361|ref|ZP_02218447.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212219386|ref|YP_002306173.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuK_Q154]
 gi|226706319|sp|B6J5K2|MURC_COXB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120576837|gb|EAX33461.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165917867|gb|EDR36471.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212013648|gb|ACJ21028.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuK_Q154]
          Length = 465

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 124/429 (28%), Gaps = 47/429 (10%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK 112
             DG      AI Q A+  V SSA    +          I              + L  +
Sbjct: 59  NHDG-----TAITQ-ADCAVYSSAIGATNPELMAAKQAKI-----PLLKRGEMLANLMKE 107

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           +    +AV G  GK++ +  +      + L          +++     R+          
Sbjct: 108 Y--QSIAVAGAHGKTTTSGMLSHAFVEANLD-PTFMVGGVLNNSQTPARVGNG-----HY 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++       + + +                      TN+  DH+  +            
Sbjct: 160 FIAEADESDASFLFM---------------HPDIAVVTNIDADHLSTYDGDFNRLKQTYI 204

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            F E   ++   ++  DD   +E+                    +       I +  Q+ 
Sbjct: 205 QFLEQTAQDGVVVLCLDDPILREIAPLLSRRVITYGFSSDAQYRVVDYCQQGIQSLFQIH 264

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                        +PG+    NA     +   + ++   +L+ L     V  RF   G  
Sbjct: 265 SPQRKAPLTVKLSMPGQHNALNATAVTAIADVVRMNEPALLKSLADFPGVDRRFTIRGEM 324

Query: 353 SRGGRIYV---DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
                  +   DY H  N ++  L   R     R + V      R    R +M +    L
Sbjct: 325 ILPKGNALIIEDYGHHPNEIKATLAAARAAWPERRM-VLVFQPHRYSRTRDLMTEFVSVL 383

Query: 410 A--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI-RTAIEMLNKQD 460
           A  D  ++ +     E P        +   + +G+         ++ +  T  ++    D
Sbjct: 384 AETDWLVLLEVYSAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPND 443

Query: 461 VLVVAGKGH 469
           ++++ G G+
Sbjct: 444 IIILQGAGN 452


>gi|254391593|ref|ZP_05006792.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812134|ref|ZP_06770777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440710|ref|ZP_08215444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705279|gb|EDY51091.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324733|gb|EFG06376.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 492

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 122/374 (32%), Gaps = 26/374 (6%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +GL +  +G        A     T
Sbjct: 102 ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGLRTAAVGNIGVSLLDAVLGENT 161

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             +    A       +    +  +         H    ++  + +  NL  DH+D+H + 
Sbjct: 162 GENAGQDAGRDGGEGADANAYDVLAVELSSYQLHWAPSLRAHSAAVLNLAPDHLDWHGSM 221

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +AY  A  +         +     AD A    V +     GCR +             V 
Sbjct: 222 EAY--AADKGRIYEGNTVACVYNAADPATEDLVREADVEEGCRAIGFTLGTPGPSQLGVV 279

Query: 284 AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                 +  ++   +             P    + NAL AA L  A G+ +  V E L  
Sbjct: 280 DGILVDRAFVANRHQQAQELAEVADIDPPAPHNIANALAAAALARAFGVPATAVREGLRS 339

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R E V   +    +    A  +++    L           IV    G  +    
Sbjct: 340 FRPDPHRIEKVADVAGVAYVDDSKATNTHAAAASLAAYEP------IVWIAGGLAKGAVF 393

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIE------AIRT 451
             ++G+ A  L  + ++        D   IR  +    P       +R +      A+R 
Sbjct: 394 DELVGQSADRLRAVVLM------GADRALIREALARHAPEVPVVDLDRTDTGAMAAAVRE 447

Query: 452 AIEMLNKQDVLVVA 465
           A  +    D +++A
Sbjct: 448 AARLARPGDTVLLA 461


>gi|51473598|ref|YP_067355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           typhi str. Wilmington]
 gi|60390366|sp|Q68WW9|MURD_RICTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51459910|gb|AAU03873.1| D-glutamate ligase [Rickettsia typhi str. Wilmington]
          Length = 457

 Score = 46.0 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 95/311 (30%), Gaps = 34/311 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I ++ +                    +A+TGT+GKS+ A
Sbjct: 67  IVLSPGVPLTHEVVRIAHHFNIPIISDIDLL-------FEKSKNLKFIAITGTNGKSTTA 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   +GL     G                          +  +        +E S
Sbjct: 120 ALISHILNSNGLDYTVAGNIGVP---------------------ALQAKASKDGYVLELS 158

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  LD   +    +      N+  DH+D +Q    Y  AK ++F+ +       I   +D
Sbjct: 159 SFQLDL--VKIFTVKVAVLLNITPDHLDRYQDMNGYIAAKAKIFDRMDKDSYAVINIDND 216

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
              K  +        +++         +   +                       L G  
Sbjct: 217 YCRKIFLLLQREQLIKLIPFSVTKILNNGISIVDDKIHDNNLTY----KLPLNKNLQGLH 272

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N   +  +   IG++S  +LE +     +  R +++G+ +         A  + S  
Sbjct: 273 NCENIAASYAVSKIIGVESKKILESISSFQSLHHRMQYIGSINNISFYNDSKATNAISAL 332

Query: 371 MILKNIRTITS 381
             +K +  I  
Sbjct: 333 QSIKALDNIYW 343


>gi|311063964|ref|YP_003970689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
           [Bifidobacterium bifidum PRL2010]
 gi|310866283|gb|ADP35652.1| MurD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 476

 Score = 46.0 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 114/378 (30%), Gaps = 59/378 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +    GL +  +G      S A  +       + L   
Sbjct: 100 PAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAVGNIGKAVSHAAVDPDNDALCVEL--- 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS  L  H  D + L   + TN+  DH+D+H   +    A    
Sbjct: 157 ----------------SSFQL--HFTDSLALDCAAITNIADDHLDWHGGIE----AYAAD 194

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT- 292
             ++      A+++  D      +  A +       +G+        ++           
Sbjct: 195 KSKVFRNVRRALVFNADDRRVSALASAAHTAEGCRRIGFTLGVPQPGQIGVDDGWIVDRS 254

Query: 293 --------------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                            E               + +A+ A  L + +G+D    L  L+ 
Sbjct: 255 GVAGGAFGDETRLAPVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKA 314

Query: 339 LHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
                 R + V T + G       I    A  +++    L +       + +V    G  
Sbjct: 315 FAPGGHRIQTVATAATGDGGSIRFIDDSKATNAHAARASLSSFAP----KSVVWIAGGLA 370

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-KIRAEIIHGIPGFIEKGN-----RIE 447
           +      ++   A  +    I+  D    + P  +  A    GIP  + +          
Sbjct: 371 KGSRFEQLVADQAHTIKAAVIIGKD----QKPMLEAFAASAPGIPLTVIEPEPSDTVMAR 426

Query: 448 AIRTAIEMLNKQDVLVVA 465
           A+  A       DV+++A
Sbjct: 427 AVDAAGAYAGTGDVVLMA 444


>gi|238020915|ref|ZP_04601341.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
 gi|237867895|gb|EEP68901.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
          Length = 443

 Score = 46.0 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 117/360 (32%), Gaps = 41/360 (11%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
             + L     + I+A+TG++GK++  S V  +CQ+SGL +   G   T    A   R   
Sbjct: 98  ILADLLRHQRDQIIAITGSNGKTTTTSLVGHLCQQSGLDTVVAGNIGTPVLDAWLQRQG- 156

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                          +      +E SS  L+      +   A +  N+  DH++ +    
Sbjct: 157 ---------------KSADVWVLELSSFQLET--TPCLAAAAAACLNISEDHLNRYDDLL 199

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
            Y   K ++F     +   A    DD + + +         R                  
Sbjct: 200 DYARTKDQIFNGCRTQILNA----DDPFCRAM--------HRPEQQTRYFSLAQAADYWL 247

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                 +             PL G     NAL A  LC AIGI  + +++H++    +P 
Sbjct: 248 DPVSGSLKQRDSDFMAQSQIPLQGNHNTANALAALALCEAIGIPRSELVQHIQTFKGLPH 307

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK 404
           R E +G       I         +    +  +        IV+   G  + Q   P+   
Sbjct: 308 RVEKIGAKDGVVYIDDSKGTNVGATVAAIAGLPQ-----KIVLIAGGQGKGQDFAPL-AS 361

Query: 405 IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  D A    +        D  KI AE+              +A+  A       D++++
Sbjct: 362 VLQDKARAVFLI-----GVDAPKIAAELAARNVPHQFCDTLPQAVAAAHATAQAGDIVLL 416


>gi|256850823|ref|ZP_05556212.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           27-2-CHN]
 gi|260661034|ref|ZP_05861948.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           115-3-CHN]
 gi|282934508|ref|ZP_06339763.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|297205696|ref|ZP_06923091.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           JV-V16]
 gi|256615885|gb|EEU21073.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           27-2-CHN]
 gi|260547971|gb|EEX23947.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus jensenii
           115-3-CHN]
 gi|281301455|gb|EFA93744.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           208-1]
 gi|297148822|gb|EFH29120.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus jensenii
           JV-V16]
          Length = 435

 Score = 46.0 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 22/281 (7%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY +      +A     ++          + DD      +++ 
Sbjct: 164 AYHPDYQIMTNIDFDHPDYFKDINDTQSAFQSAADQTKKALFV---WGDDPR----LQKI 216

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
                +               V    +    ++   GK+  +F   L G+  + N+L   
Sbjct: 217 ETKIPKYTYGFKDSDDFQAYNVKKSTDGTSFSVKAHGKEIGEFKTHLFGDHNIMNSLAVI 276

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
           G+ +   +    + + L        RF           +  DYAH    ++  ++  +  
Sbjct: 277 GVALTEEVPMEDIQKGLLTYGGAKRRFSEKDFG--DITVIDDYAHHPTEMKATIQAAKQK 334

Query: 380 TSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHG 435
              + +VV        + K       +I     D A +T       E    I   ++   
Sbjct: 335 FPDKKLVVVFQPHTYSRTKEFASEFIEIL-RGVDKAYITPIFGSAREKSGDISSEDLTSQ 393

Query: 436 IPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETVHI 474
           IPG          I    ++   +  V+V  G G  E    
Sbjct: 394 IPGSEVID-----IANIADLTKNRNSVVVFMGAGDIEKYED 429


>gi|320333170|ref|YP_004169881.1| FolC bifunctional protein [Deinococcus maricopensis DSM 21211]
 gi|319754459|gb|ADV66216.1| FolC bifunctional protein [Deinococcus maricopensis DSM 21211]
          Length = 414

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E +    R   + +D AH  +    + + + T+  GR+ VVFG   D+D      
Sbjct: 276 WPGRLERLTWGER--EVLLDGAHNPDGARALRRALATLGVGRVPVVFGATADKDVAGVA- 332

Query: 402 MGKIALDLADIAIVT--DDNPRSEDP 425
            G+IA   A   ++T    +PR+  P
Sbjct: 333 -GEIAA-FASEVVLTRAVLSPRAAPP 356


>gi|302383885|ref|YP_003819708.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194513|gb|ADL02085.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 492

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 122/380 (32%), Gaps = 62/380 (16%)

Query: 68  AEAIVV-----SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
           A  ++      +             ++ P++   +   F    A+      P  ++A+TG
Sbjct: 67  AALVLSPGAPLTHPKPHWTVDKARAADVPVIG--DIELFARALAAIPADARP-KVVAITG 123

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T+GKS+  + +  + +++GL+    G               TP  +              
Sbjct: 124 TNGKSTTTALIGWVLKQAGLTVHIGGNIGIGVLAL---SAPTPDAV-------------- 166

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               VE SS+ LD              TN+  DH+D H   + Y  AK RLF+ +   E 
Sbjct: 167 --YVVEVSSYQLDL--TTSFAPDVAILTNISPDHLDRHGGMEGYVAAKARLFQVM-SPEK 221

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            A+I  DD +  + +   ++ G R+ ++  +     +     +   +  T   + K    
Sbjct: 222 VALIGVDDDWGWKTVNALNDRGLRLSTITTRTPPQFVDPAGGVPVAELATRLPDQKPAFD 281

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGID--------------------------SALVLEHL 336
                        LVA G+ IA                              +   ++ L
Sbjct: 282 AGRFIIVDATGGKLVADGVAIADLAPARSLPGRHNAQNAAFAYAAARALGVSTEAAVDGL 341

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS--GRIIVVFGCGGDR 394
                +  R E VG       +    A  +++    L +  T     G      G    R
Sbjct: 342 MTFPGLAHRMETVGHLGPVRFVNDSKATNADAARQALMSYPTSFWIAGGRAKDGGIEDLR 401

Query: 395 D----QGKRPIMGKIALDLA 410
           D      K  ++G+ A D A
Sbjct: 402 DLFPRVAKAYLIGEAAADFA 421


>gi|255017880|ref|ZP_05290006.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           F2-515]
          Length = 295

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 100/319 (31%), Gaps = 42/319 (13%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
           KFL               +A+TG+ GK+S    +  +      +S+ IG  +   +   +
Sbjct: 7   KFLGQLIDGYTS------IAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKDAE 60

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
                   +   +   +  +   T+  +                      TN+  DH DY
Sbjct: 61  Y-----FALEACEYQRHFLAYKPTYAIM----------------------TNIDWDHPDY 93

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
            ++    FNA   L ++       A+    D     + K   +        G + +F   
Sbjct: 94  FKSVDDVFNAFETLGKQ----VKKAVFALGDDAE--LRKLTLDIPIIYFGFGEENEFQAK 147

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
             +      +      E     F  P  G+  V NAL    LC   G+    V   L+  
Sbjct: 148 NVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTF 207

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             V  RF           +  DYAH  + +   +   R     + +V         + + 
Sbjct: 208 EGVKRRFSIT--EKGNQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQPHTFTRTRT 265

Query: 400 PIMG-KIALDLADIAIVTD 417
            + G   +L+LAD   + D
Sbjct: 266 FLQGFADSLNLADEVYLCD 284


>gi|300774248|ref|ZP_07084115.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300758927|gb|EFK55756.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 452

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 5/175 (2%)

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAI-HNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           ++K       ++   G     ++ + +           +  +GK  D    +PG   V N
Sbjct: 221 IVKTGLPFKGQISYSGKGEGDVYAENIHVRDGEFYFDYVHHDGKISDIHLGIPGIHNVEN 280

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A      + I  A +++ L     V  RFE+V  N +      DYAH    L   + 
Sbjct: 281 AVAAITAARLLSIADAKIVKALSTFKGVKRRFEYVVRNPQ-TIYIDDYAHHPEELRAFIS 339

Query: 375 NIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++R +   + + V        R +       ++   +AD  ++ +  P  E P +
Sbjct: 340 SMRKLYPAKKLTVIFQPHLFSRTRDFVDGFAEVLA-MADELLLMEIYPARELPIE 393


>gi|162455913|ref|YP_001618280.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161166495|emb|CAN97800.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 495

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRD-QGKRPI 401
            R + +   +RG R+Y D+AH   +++  L+ +R    +G +  VF        +     
Sbjct: 345 RRRQDLLFEARGVRVYDDFAHHPTAVDETLRALRSRHPAGALWAVFEPRSATACRALHQE 404

Query: 402 MGKIALDLADIAIVT----DDNPRSE--DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
               A + AD  ++      D    E  D +++  +I  G        +  +AI TAI  
Sbjct: 405 PYARAFEAADRVVLAPLGRPDIAAGERLDLDRLVRDIERGGKRAEAAASV-DAIVTAIAR 463

Query: 456 -LNKQDVLVVA 465
              + D + + 
Sbjct: 464 DAREGDTIALL 474


>gi|261338918|ref|ZP_05966776.1| hypothetical protein ENTCAN_05116 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318743|gb|EFC57681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 438

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 134/404 (33%), Gaps = 66/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPSLSAAADAGVEIVGDIE--------LFCREAQAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGMNVGVGGNIGLPALMLLDKG--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TTSLHAAAATILNVTEDHMDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G       L +           +  E         L 
Sbjct: 213 ADDALTMPVRGADDRCISFGITMGDYHLNRQLGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  +  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRSSSLQALTTYSGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR------ 421
           S E  L  +     G + ++ G             GK A   +    +  DN R      
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGD-----------GKSADFSSLKQYLAGDNIRLYCFGR 372

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  ++R EI        +     +A+R     +   D++++
Sbjct: 373 DGGELAQLRPEIAE------QTETMEQAMRLIAPRVQPGDMVLL 410


>gi|254509131|ref|ZP_05121231.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
 gi|219547928|gb|EED24953.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
          Length = 486

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 122/405 (30%), Gaps = 48/405 (11%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  PI+     R+   L+      +G      +AV GT GK++  + V Q
Sbjct: 94  ENPEVIAARAARIPIV-----RRAEMLAELMRFRHG------IAVAGTHGKTTTTALVTQ 142

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   +GL    +     + S   + RL +   +      S  S                 
Sbjct: 143 IYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH-------------- 187

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++ +    TN+  DH+D +             F   LP    AI+  DD   +E
Sbjct: 188 ------LQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRE 241

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++ R                 I   +      K    I     D +    +PG     NA
Sbjct: 242 LVPRISRQVITYGFSEDADVRIDNYRQEGQQGKFT-VIREGKADLEITLNIPGRHNALNA 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMI 372
             A  +     I    +L  +        RF+ +G    G     +  DY H    +E+ 
Sbjct: 301 SAAIAVATEDDISDEAILNAMAGTQGTGRRFDHLGEFETGNGNAMLVDDYGHHPTEVEVT 360

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP----- 425
           ++  R     + +V+        + +        +     D+ I+ D     E P     
Sbjct: 361 IQAARNGWEDKRLVMIFQPHRYSRTRDLYDDFANVLEQ-VDVLIMLDVYSAGEKPIAGAD 419

Query: 426 -EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +   I   G    I   +          +L   D+++  G G
Sbjct: 420 GRALCRTIRGRGKLDPIFVPDSQSLPSVLANVLQDGDLVLTQGAG 464


>gi|302391529|ref|YP_003827349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203606|gb|ADL12284.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 454

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 99/279 (35%), Gaps = 18/279 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+  R    +       NL  DH++ H T + Y  AK ++F      +   + Y
Sbjct: 164 EISSFQLENIR--DFRPKISLILNLTPDHLNRHGTFEDYIAAKKKIFINQTESDYTVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  ++ +                    I+  +   I+    +T   E         + 
Sbjct: 222 -DDELTRGLADETGGEVIYFSQQSRLNHGIYAAEGKIIN---NLTADNEPLIQIDETGIK 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   + NAL A  + +  GID  ++ + L++   +  R E V T      I    A    
Sbjct: 278 GPHNLENALGAVVIALLRGIDVKIIRKVLQEFSGIEHRIEEVATIEGIKYINDSKATNPA 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L+          I +   G D+         KI  ++ ++ ++       E  EK
Sbjct: 338 AAIKALETFSA-----PITLIAGGMDKKAELTDFAFKIEENVQNLILL------GETAEK 386

Query: 428 IRAEIIHG-IPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
           I   +         +  +  EA++ A E+  K  ++++A
Sbjct: 387 IEESVTEFRFSNIKQVDSISEAVKEAEEVSVKGSIVLLA 425


>gi|238786721|ref|ZP_04630522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
 gi|238725089|gb|EEQ16728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
          Length = 438

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 135/400 (33%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  I +V +              ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSDAADAGIEIVGDIE--------LFCRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L K  + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVP-------------ALTLLKQENQLV-------VL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLRASAATILNVTEDHTDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG         ++          +  E         L 
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWL-------RVRGEKVLNTREMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+GI  +  L+ L     +P RF+ V  ++    I    A    
Sbjct: 266 GRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLVFEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  ++    G + ++ G  G   D     R + G+             D    E 
Sbjct: 326 STEAALDGLQ--VDGTLHLLLGGDGKSADFSGLTRFLQGEHIKIYC----FGRD---GEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 377 LAELRPEVSQ------LTETMEQAMVLLAKNLAPGDMVLL 410


>gi|310287099|ref|YP_003938357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
 gi|309251035|gb|ADO52783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
          Length = 476

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 113/378 (29%), Gaps = 59/378 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S       +   +GL +  +G      S A  +       + L   
Sbjct: 100 PAPWVGITGTNGKTSTTEMTSAMLCANGLVAPAVGNIGKAVSHAAVDPDNDALCVEL--- 156

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS  L  H  D + L   + TN+  DH+D+H   +    A    
Sbjct: 157 ----------------SSFQL--HFTDSLALDCAAITNIADDHLDWHGGIE----AYAAD 194

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT- 292
             ++      A+++  D      +  A +       +G+        ++           
Sbjct: 195 KSKVFRNVRRALVFNADDRRVSALASAAHTAEGCRRIGFTLGVPQPGQIGVDDGWIVDRS 254

Query: 293 --------------ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                            E               + +A+ A  L + +G+D    L  L+ 
Sbjct: 255 GVAGGAFGDETRLAPVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKA 314

Query: 339 LHVVPGRFEFVGTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
                 R + V T + G       I    A  +++    L +       + +V    G  
Sbjct: 315 FAPGGHRIQTVATAATGDGGSIRFIDDSKATNAHAARASLSSFAP----KSVVWIAGGLA 370

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGIPGFIEKGN-----RIE 447
           +      ++   A  +    I+  D  P  E       +I    P  + +          
Sbjct: 371 KGSRFEQLVADQAHTIKAAVIIGKDQKPMLEAFAASAPDI----PLTVIEPEPSDTVMAR 426

Query: 448 AIRTAIEMLNKQDVLVVA 465
           A+  A       DV+++A
Sbjct: 427 AVDAAGAYAGTGDVVLMA 444


>gi|239907965|ref|YP_002954706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
 gi|239797831|dbj|BAH76820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
          Length = 442

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 63/399 (15%), Positives = 112/399 (28%), Gaps = 69/399 (17%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
            GA+ +V+S      + +  + +     VV          AS      PE I+AVTG++G
Sbjct: 74  AGADLVVLSPGIRAANLAPALAACPGAQVVSEL-----ELASWFT---PEPIVAVTGSNG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++    +  + + +G   F  G               TP           LS +    V
Sbjct: 126 KTTTVMLISALLEAAGRRVFTGGNIG------------TPLS------DHVLSEEPADVV 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +E SS  L   +    +       N   +H+D+H     Y +AK+R+F           
Sbjct: 168 VLEVSSFQLQLTKTF--RPKVAVLLNFAANHLDWHADLDEYLDAKLRIFATQR------- 218

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
                     ++                G   +                           
Sbjct: 219 -----PDDTAIVSEELRDLLSGRPFTRAGVTWYAAA-----------------SGFLCPR 256

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G     N   A   C A G+D  L  +        P R + +G       +    A T
Sbjct: 257 LAGVHNQANMEAAYLACRAFGVDIKLARQVFADFVPAPHRIQIIGEKGGVLFVDDSKATT 316

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
             ++E     IR+      ++  G     D      M  +  +      +          
Sbjct: 317 VTAMEA---AIRSFDRPVRLLCGGVWKGGDLE---AMLPLVKEKVVAVGL------FGGS 364

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++      G+          EA+          D +++
Sbjct: 365 REVFETAFAGVVPVRYAPTLAEAVARIYADAAPGDAVLL 403


>gi|88801285|ref|ZP_01116813.1| UDP-N-acetylmuramate--L-alanine ligase [Polaribacter irgensii 23-P]
 gi|88781943|gb|EAR13120.1| UDP-N-acetylmuramate--L-alanine ligase [Polaribacter irgensii 23-P]
          Length = 450

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 15/175 (8%)

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
            F +PG   + NAL A  +    GI    + + LE    V  RF      +    +  DY
Sbjct: 263 SFDVPGRHNIMNALAAIAMADVYGISLENIKKCLETFKGVARRF-SYKIKTENFVLIDDY 321

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNP 420
           AH   ++  +  ++R +     I+V        R +              D  ++ D  P
Sbjct: 322 AHHPTAIYAVESSVREMYPDAEILVVFQPHLYSRTRDFIDDFALALNKF-DAILLLDIYP 380

Query: 421 RSE------DPEKIRAEIIHGIPGFIEKGNRIEAIR----TAIEMLNKQDV-LVV 464
             E      D   + ++I +      +K N ++ I+      + ML   D+ ++V
Sbjct: 381 AREIPIPGVDSSWLLSKIENPHKKLTQKNNLLKDIKNSSAKVVVMLGAGDIGVLV 435


>gi|86134186|ref|ZP_01052768.1| FolC bifunctional protein [Polaribacter sp. MED152]
 gi|85821049|gb|EAQ42196.1| FolC bifunctional protein [Polaribacter sp. MED152]
          Length = 402

 Score = 45.7 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 7/155 (4%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            A+ A        +    + + L  +                 ++  D AH    L+ ++
Sbjct: 244 TAVTAIHNLYTFKVSEKAIQKGLLNVVQNTNLQGRWQILKEAPKVICDTAHNKEGLQTVM 303

Query: 374 KNIRTITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAE 431
           K ++  T  ++ +V G   D+D     P+    A            N PR    E +  +
Sbjct: 304 KQLQKETYHKLHIVLGVVSDKDLDDILPLFPTNATYY-----FCMPNIPRGLSAEALMQK 358

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                       +   A + A+ + N+QDV+ + G
Sbjct: 359 ASKYNLKGNFFESVQMAYQEALTIANQQDVIYIGG 393


>gi|28870969|ref|NP_793588.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854218|gb|AAO57283.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 434

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 103/373 (27%), Gaps = 21/373 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPARRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY-------------LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              ++                 G            LD   L+          NL    + 
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFERAQLDAVVLEVGLGGRLDAVNLIDSDLA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FI 277
              +        +    E +  E   I  A                 +   +G       
Sbjct: 158 LVTSIGVDHTEYLGDTRESVAFEKAGIFRAGCPALCGDPSPPEPLLAKAHELGCPLLLRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +    +         G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGDDSWDWRGVAHGEQIELCGLPLLDLPMQNAALALQAFALLGYPLQTDAIGQV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +       G ++ +  D  H  ++   + + + R   SG+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRAVRWHGKQLNLLLDVGHNPHAAHFLQRRLARRPVSGKRFAVFGLLND 337

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +D     ++  +A  +AD A+      RS   E + + + +         +  +A+    
Sbjct: 338 KDLDG--VVAHLAPVIADWAVAPLSTSRSRPAEDLHSALQNLGARVTSYQSVAQALDAQC 395

Query: 454 EMLNKQDVLVVAG 466
                 D +++ G
Sbjct: 396 AHATPDDEILLFG 408


>gi|332638502|ref|ZP_08417365.1| folylpolyglutamate synthase [Weissella cibaria KACC 11862]
          Length = 436

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 14/131 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRP 400
            P RFE V          +D AH  + ++ +   + R      + ++FG   D+     P
Sbjct: 302 WPVRFERVSNTPL---TVLDGAHNQHGVDALAATLARRFKQRTVHILFGALADKAY---P 355

Query: 401 IMGKIALDL--ADIAIVTDDNPRSE---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
            M     DL   D+ +V   NP S    DP +  A++           +   A +T   +
Sbjct: 356 EMLHTLADLPNVDLHVVGFQNPGSRTVLDPTEAAAQVTGH--TVTVHQDWQTAYQTVKAL 413

Query: 456 LNKQDVLVVAG 466
             + D+++  G
Sbjct: 414 AKQNDMILFTG 424


>gi|256960177|ref|ZP_05564348.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Merz96]
 gi|293382542|ref|ZP_06628476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis R712]
 gi|293387857|ref|ZP_06632396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis S613]
 gi|312906855|ref|ZP_07765852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 512]
 gi|312978890|ref|ZP_07790616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 516]
 gi|256950673|gb|EEU67305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Merz96]
 gi|291080090|gb|EFE17454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis R712]
 gi|291082704|gb|EFE19667.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis S613]
 gi|310627109|gb|EFQ10392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 512]
 gi|311288327|gb|EFQ66883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 516]
          Length = 456

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D       +       +  +              A     ++  + E         +
Sbjct: 218 -AEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----ENQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           fischeri ES114]
 gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri
           ES114]
          Length = 404

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 139/397 (35%), Gaps = 56/397 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L         +  I +V +         +         ++A+TG++GKS
Sbjct: 33  ADLIVTNPGIALASPQLKPAIDKGIKIVGDI-----ELFAWAVNAP---VIAITGSNGKS 84

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V     ++ + +G+ +   G                 + + L +  + L         +
Sbjct: 85  TVTDLTGEMAKAAGVKTAVGGNIG-------------FAALDLLEQDAEL-------YVL 124

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+FE            
Sbjct: 125 ELSSFQLET--TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAEVCIVNRDDK 182

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                 ++ +K           +   G     K    +    ++ +  +           
Sbjct: 183 QTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKNTVPLLAANELGLVGKHNI-------- 234

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 N+LVA  L  A GI+    L+ L   + +  R + V  N+    +    A    
Sbjct: 235 -----ANSLVAIALLDAAGINLDATLDTLRTYNGLTHRCQVVADNNGIRWVNDSKATNVA 289

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L  ++    G++ ++ G  G     K     +++  L D+ +        ED   
Sbjct: 290 STLAALSGLQL--EGKLHLLVGGVG-----KGADFSELSPALHDLNL--MMYCFGEDG-- 338

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P  +      EAI T    LNK D++++
Sbjct: 339 --DQFVSLDPRSLLCETMNEAIATLYPTLNKGDMVML 373


>gi|62900655|sp|Q5E2P8|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 440

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 139/397 (35%), Gaps = 56/397 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L         +  I +V +         +         ++A+TG++GKS
Sbjct: 69  ADLIVTNPGIALASPQLKPAIDKGIKIVGDI-----ELFAWAVNAP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V     ++ + +G+ +   G                 + + L +  + L         +
Sbjct: 121 TVTDLTGEMAKAAGVKTAVGGNIG-------------FAALDLLEQDAEL-------YVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+FE            
Sbjct: 161 ELSSFQLET--TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAEVCIVNRDDK 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                 ++ +K           +   G     K    +    ++ +  +           
Sbjct: 219 QTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKNTVPLLAANELGLVGKHNI-------- 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 N+LVA  L  A GI+    L+ L   + +  R + V  N+    +    A    
Sbjct: 271 -----ANSLVAIALLDAAGINLDATLDTLRTYNGLTHRCQVVADNNGIRWVNDSKATNVA 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L  ++    G++ ++ G  G     K     +++  L D+ +        ED   
Sbjct: 326 STLAALSGLQL--EGKLHLLVGGVG-----KGADFSELSPALHDLNL--MMYCFGEDG-- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P  +      EAI T    LNK D++++
Sbjct: 375 --DQFVSLDPRSLLCETMNEAIATLYPTLNKGDMVML 409


>gi|107026749|ref|YP_624260.1| FolC bifunctional protein [Burkholderia cenocepacia AU 1054]
 gi|116692059|ref|YP_837592.1| FolC bifunctional protein [Burkholderia cenocepacia HI2424]
 gi|170735948|ref|YP_001777208.1| FolC bifunctional protein [Burkholderia cenocepacia MC0-3]
 gi|254248699|ref|ZP_04942019.1| Folylpolyglutamate synthetase [Burkholderia cenocepacia PC184]
 gi|105896123|gb|ABF79287.1| FolC bifunctional protein [Burkholderia cenocepacia AU 1054]
 gi|116650059|gb|ABK10699.1| FolC bifunctional protein [Burkholderia cenocepacia HI2424]
 gi|124875200|gb|EAY65190.1| Folylpolyglutamate synthetase [Burkholderia cenocepacia PC184]
 gi|169818136|gb|ACA92718.1| FolC bifunctional protein [Burkholderia cenocepacia MC0-3]
          Length = 436

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 122/398 (30%), Gaps = 42/398 (10%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ---- 158
               + L  +    ++ V GT+GK S  +F++ I  R+G           +    +    
Sbjct: 30  GQVKAALQLEFACPVITVGGTNGKGSTCAFLETILVRAGYKVGCHTSPHLLEFNERARVN 89

Query: 159 ------DNRLTTPSPIYLAKALSYLSSQGVTHVSVE------ASSHGLDQHRLDGIKLIA 206
                 D  L     +  A+                       +S GLD   L+      
Sbjct: 90  GQNVTDDELLPHFEAVEAARTSLAEPVSLTYFEFTTLAILHLFASRGLDAVILEVGLGGR 149

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-------EVMKR 259
               N+         +        +    E +  E   I  A              ++  
Sbjct: 150 LDAVNIIDTDCAIVTSIDIDHTEYLGDTREKIAFEKAGIFRAGKPAICGDPAAPQTLIDH 209

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A   G  +  VG   ++                                +    +A +AA
Sbjct: 210 AEAIGADLWLVGRDFRYEAQAGAERQQWSYLGREKRYPALAYPALRGANQLINASAALAA 269

Query: 320 GLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
              +   +  +     L   +V  PGRF+ +        I +D AH  ++  ++ +N+  
Sbjct: 270 LEALRPVLPVSAQDIRLGLANVELPGRFQVLPGKPA---IVLDVAHNPHASAVLEQNLGN 326

Query: 379 I-TSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-I 433
           +        VFG   D+D     + + G+I     D   VTD   PR+   E++ A +  
Sbjct: 327 MGFFPYTYAVFGAMHDKDIDGVLQHLKGEI-----DHWCVTDLPLPRAASAEQLEAALRK 381

Query: 434 HGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            G+            +  EA R A++  ++ D +VV G
Sbjct: 382 AGVEEGPDSSVTRYASPAEAFRDALKRASENDRIVVFG 419


>gi|157825688|ref|YP_001493408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
 gi|157799646|gb|ABV74900.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           akari str. Hartford]
          Length = 492

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 115/407 (28%), Gaps = 45/407 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           I++S    L      I  N  I V+ +                  N +A+TGT+GKS+  
Sbjct: 67  IILSPGVPLTHKIVGIAKNFNIPVISDIDLL-------FEKSKNLNFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTI----------------SSFAQDNRLTTPSPIYLAKAL 174
           + +  I   SGL     G                     S      ++ T     L    
Sbjct: 120 ALISHILNSSGLDYQVAGNIGVPALQAKASKDGYVLELSSFQLDLVKIFTAKIAVLLNIT 179

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                +        A+   +          +     +  R+     Q +Q        + 
Sbjct: 180 PDHLDRHQHMNGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFITLQQEQRIKLVPFSVT 239

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           + L    S      +D +  ++               +QG+     KVC      Q ++ 
Sbjct: 240 KILENCISVVDNKINDNFFDDIRFECQYNSESFRQNEFQGEPAERIKVCEHRLDLQNSLV 299

Query: 295 VEGKD--FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
               +    F   L G     N   +  +   IG++   +LE +     +P R +++ + 
Sbjct: 300 SNFLNDAVPFNNNLQGTHNDENIAASYAVAKIIGVEPKKILESISGFQSLPHRMQYICSI 359

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG---KRPIMGKIALDL 409
           +         A  + S    +K +  I           G  +D G    +P   KI    
Sbjct: 360 NNINFYNDSKATNAISAVQSIKALDNIYW------LAGGIPKDGGIECIKPYFSKIKKAY 413

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                           ++I A     I  F+   N  +A   A +  
Sbjct: 414 F-----------YGQAKEIFANTTKNIVDFVICDNLEQAFDLAYKDA 449


>gi|302546148|ref|ZP_07298490.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463766|gb|EFL26859.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 486

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 117/374 (31%), Gaps = 46/374 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LAVTGT+GK++    +  I + +GL +  +G               
Sbjct: 112 ELAWRLRGPDSPPWLAVTGTNGKTTTVRMLASILEAAGLRTAAVGNIGVSLLDIVLGE-- 169

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                                ++VE SS+ L       ++  +G+  NL  DH+D+H + 
Sbjct: 170 ----------------TPYDVLAVELSSYQLHW--APSLRAHSGAVLNLAPDHLDWHGSM 211

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
            AY  A  +       + +     AD A    V       GCR +             V 
Sbjct: 212 AAY--AADKGRIYEGNQVACVYNAADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVV 269

Query: 284 AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                 +  ++   K             P    + NAL AA L  A G+    V + L  
Sbjct: 270 ENILVDRAFVTNRQKSAQELAEVADVNPPAPHNIANALAAAALARAYGVPPQAVRDGLRA 329

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
               P R E V        +    A  +++ E  L           IV    G  +    
Sbjct: 330 FRPDPHRVEHVADVEGVSYVDDSKATNTHAAEASLGAYE------HIVWVAGGLAKGATF 383

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIE------AIRT 451
             ++   A  L    ++        D   IR  +            +R +      A+R 
Sbjct: 384 DELVLAAAPRLRGAVLI------GADRALIREALARHAADVPVVDLDRTDTGAMAAAVRE 437

Query: 452 AIEMLNKQDVLVVA 465
           A  +    D +++A
Sbjct: 438 AARLARPGDTVLLA 451


>gi|330501922|ref|YP_004378791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
 gi|328916208|gb|AEB57039.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
          Length = 450

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 119/357 (33%), Gaps = 40/357 (11%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   I+A+TG++ KS+V + V ++   +G      G   T               +
Sbjct: 105 FARHAKAPIVAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTP-------------AL 151

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
            L      L         +E SS  L+    D +     +  N+  DH+D +    AY  
Sbjct: 152 DLLADDVEL-------YVLELSSFQLET--TDQLNAEVATCLNISEDHMDRYSGLPAYHL 202

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK R+F          +I  DDA S+ ++             G          +   + +
Sbjct: 203 AKHRIFRGARQ----VVINRDDALSRPLIADQ----VTSWEFGLGKPDFKRFGLLEENGE 254

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF 348
           + +    +         + G     NAL A  L  A+G+    +L  L +   +P R ++
Sbjct: 255 KSLAFRFDALLPVSELKIRGAHNQSNALAALALGHAVGLPMEAMLATLRQFAGLPHRCQW 314

Query: 349 VGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD 408
           VG            A    +    ++ +    +G+  +V   GGD        +      
Sbjct: 315 VGERGGVSYYDDSKATNVGAALAAIEGLGADIAGK--LVLIAGGDGKGADFSALKAPVAR 372

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVV 464
                ++        D E + A +    P   +   +  EA++ + E+    D +++
Sbjct: 373 FCRAVVL-----LGRDAELLAAALGDAAPLVRVTILD--EAVQRSSELAEAGDAVLL 422


>gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 454

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 66/407 (16%), Positives = 130/407 (31%), Gaps = 52/407 (12%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA+ ++VS   +    +        I +  +  +     A            A+
Sbjct: 64  ADAL-LGADLVLVSPGLAPTLPALRAAREAGIALWSDV-ELFGRLARAPIA-------AI 114

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
           TG++GKS+V + + ++ + +G      G   T +          P P             
Sbjct: 115 TGSNGKSTVTTLLGEMAKAAGRRVAVGGNLGTPALDLLP-EAGAPEP------------- 160

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +E SS  L  H    ++    +  NL  DH+D+H   +AY  AK R+F  +   
Sbjct: 161 --ELYVLELSSFQL--HYCHALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEG 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           ++  +   +D   + +  +A                     +             +    
Sbjct: 217 DTLVL-NGEDPALQSLPAKAPAGVEIRRFGHTPQLDAWADDLALHWPSAAPMPLADI--- 272

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                LPG+    N L AA +  A+ +    + +       +P R ++V           
Sbjct: 273 ----HLPGKHNGENVLAAALMANALNLPETAIRQAAADFRGLPHRLQWVARVGGVDYYDD 328

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDN 419
                  +    ++ +         +V   GGD +     P+  + AL     A++   +
Sbjct: 329 SKGTNLGASLRAIQALPG------PLVLILGGDAKGADLSPL--REALRGQRGAVLLGKD 380

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGN--RIEAIRTAIEMLNKQDVLVV 464
                   I   I+ G    +  G      A+R A  M    D +++
Sbjct: 381 ------AAILEAILAGSLPTLRIGEGGMSRAVRAAAAMAQPGDQVLL 421


>gi|166031700|ref|ZP_02234529.1| hypothetical protein DORFOR_01400 [Dorea formicigenerans ATCC
           27755]
 gi|166028677|gb|EDR47434.1| hypothetical protein DORFOR_01400 [Dorea formicigenerans ATCC
           27755]
          Length = 439

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 59/395 (14%), Positives = 109/395 (27%), Gaps = 48/395 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           ++TR+FL              ++ V GT+GK SV +++Q I +  G  +     TS    
Sbjct: 28  EHTREFLERLGR---PAFDRKVVHVAGTNGKGSVCAYIQAILEAEGKKTGFF--TSPHLI 82

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE---------------ASSHGLDQHRLD 200
              +       PI   K              +E                     ++  ++
Sbjct: 83  SINERIQIGREPIDNEKFYQVFEHVYDVVKKMEEEGIPHPSYFEFLFGMGLSAFEKSDVE 142

Query: 201 GIKLI-----AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY-------- 247
            I L          TN          T  +  +  +            A I         
Sbjct: 143 YIVLETGLGGRLDATNAFPCPALTVITSISLDHTMILGNTIEQIAAEKAGIIKEGTPVIF 202

Query: 248 --ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              D+A ++ +   A         +G     I       I   +      +      +  
Sbjct: 203 DGNDEAAAEIIRNTAREHHAPCREIGKNAFEIREVTRKHIAFSRTNAYHKDVIWQVPICG 262

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +        A+ A    +    +   +           GR E            +D AH 
Sbjct: 263 IYQVKNAEIAIEAVQCLLGNKPEHEEMWRDAVAKIQWQGRMEECAD-----HFIIDGAHN 317

Query: 366 SNSLEMILKNIRTITSGR-IIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPRS 422
             ++E  ++++R +      I++F    D+   K   M +           +VT+   + 
Sbjct: 318 PGAIEAFVESVRALKEEEPPILIFSAVSDK---KYEQMIEYLCRHLQTKAFVVTEIEDKR 374

Query: 423 EDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEM 455
             P     EI           K +  +AI  A EM
Sbjct: 375 RVPAGELGEIFKRYATCPVYVKADVKDAIACAYEM 409


>gi|199598140|ref|ZP_03211562.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           rhamnosus HN001]
 gi|199590901|gb|EDY98985.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           rhamnosus HN001]
          Length = 459

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 95/310 (30%), Gaps = 19/310 (6%)

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
              Q           +   +S ++ +     ++ A         +  +       TN+  
Sbjct: 133 MLNQQWPHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQLCGIKTLHPHIAVLTNIYE 192

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+D+H  +  Y  AKMR+     P +   + +       ++ K++             G
Sbjct: 193 AHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDL-PEMHQLAKQSQAQIVPFSRKQAAG 251

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               L           +T   +         +PG   + NAL A       G+    + E
Sbjct: 252 ARASLID-------GWLTFDGDKIMPASDMQIPGLHNIENALAAIAAAKLKGVSDDAIRE 304

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L     V  R +++ T +         A    +  + L   +       IV    G DR
Sbjct: 305 VLRTFSGVKHRIQYLETINGRRVYNDSKATNVEAATVALNAFQQ-----PIVWLAGGLDR 359

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +   +   +  + +     P      KI  +   GIP   +  N + A+  A E
Sbjct: 360 GLPMDALTPLVKKHVKSMVVFGQTAPLM---AKIAKD--AGIP-VQKTENVMTAVPLAYE 413

Query: 455 MLNKQDVLVV 464
                DV+++
Sbjct: 414 ASRPGDVILL 423


>gi|46143515|ref|ZP_00135096.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 439

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 152 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSGGCILSAAA 210

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 211 DENVQNTLKMGSYSELQF----IGEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGA 266

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G   +G  +Y D+AH   ++
Sbjct: 267 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVKGITVYDDFAHHPTAI 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  LAD     V   +    
Sbjct: 326 AATIDALRGKVGKEQRILAVLEPRSNTMK---MGVHKEEIAPSLADANAVFVYQPDTIPW 382

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 383 AVSVITDNLTQPAKWS---ADLDELVKMIVEEAKPTDHILV 420


>gi|317011231|gb|ADU84978.1| hypothetical protein HPSA_05005 [Helicobacter pylori SouthAfrica7]
          Length = 335

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 12/67 (17%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            +Q G +FVA     +D H FIP+A+  GA  I+ +  Y L D       +   + + + 
Sbjct: 34  KVQKGSLFVA-----KD-HAFIPKALELGAYGILYTGEYPLSDR------DVAWIKLKDI 81

Query: 99  RKFLSLF 105
              L+  
Sbjct: 82  EHSLNHL 88


>gi|189501429|ref|YP_001960899.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
 gi|226711894|sp|B3EQC0|MURD_CHLPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189496870|gb|ACE05418.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 466

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 121/368 (32%), Gaps = 39/368 (10%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             AS      P  I+ +TGT GK++ +S V+ IC                 + +++ R+ 
Sbjct: 100 EAASWFC---PAFIIGITGTDGKTTTSSMVEAIC--------------LSGANSREQRVF 142

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
           +   I +  +      +      VE SS+ L+  R    +      TN+  DH+D +   
Sbjct: 143 SAGNIGVPFSSLVGEMRKGDIAVVELSSYQLE--RCRSFRPDVAVITNIMPDHLDRYGGS 200

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
              +            K+   +  ADD   +   +       +++      K   L   C
Sbjct: 201 MKRYAEAKYRIYAQQRKQDTLVYNADDETLRAHFEGGGAFVPQLVPFSLDRKRASLGGAC 260

Query: 284 AIHNKQQVTISVEGKDFD--------FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
               +    I+V     +        F     G   + NAL A     A G+D   + E 
Sbjct: 261 YAAIEGDWLITVVNGREEKVITGSGLFKRSFRGRHNLENALAAVAATRAAGVDVFPIREA 320

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L +   V  R E+V T      I    A   N+L   L           +V+   G D+ 
Sbjct: 321 LRRFAGVEHRQEYVRTMHGVDWINDSKATNLNALRQALDATPG-----KLVLIAGGRDKG 375

Query: 396 QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM 455
                +  ++   ++ + +        E   K   E    +   +   +  EA+  A   
Sbjct: 376 DDLSDLEERVRQKVSVLVVF------GESKAK-FTEAFSSVVRVVPALSLEEAVEQAQRY 428

Query: 456 LNKQDVLV 463
            +  + ++
Sbjct: 429 ASTGETVL 436


>gi|15896472|ref|NP_349821.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
 gi|25008805|sp|Q97E89|MURC_CLOAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15026298|gb|AAK81161.1|AE007818_7 UDP-N-acetylmuramate-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
          Length = 458

 Score = 45.7 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 3/188 (1%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+DY++      N   +    +  +         D      +     
Sbjct: 178 YPYIGVILNIDADHLDYYKNIDDIENTFAKFVNLIPKEGYLIA--NADDKRVARVASNAT 235

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +                             F+    +PG+  + NAL A    
Sbjct: 236 CNVVSFGIDNGDIRAKNISFNESGFSSFDVYKSSELLFNIELNVPGKHNILNALSAIASA 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           + + I    +++ L+       RFE  G  + G  +  DYAH    ++  L   +     
Sbjct: 296 LTLKISHKSIIDGLKSFKGTHRRFEIKGVKN-GITVIDDYAHHPTEIKATLDAAKNYPHN 354

Query: 383 RIIVVFGC 390
           +I  VF  
Sbjct: 355 KIYCVFQP 362


>gi|223939896|ref|ZP_03631765.1| FolC bifunctional protein [bacterium Ellin514]
 gi|223891488|gb|EEF57980.1| FolC bifunctional protein [bacterium Ellin514]
          Length = 435

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 116/391 (29%), Gaps = 49/391 (12%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQ 158
           L+  A     K     + V GT+GK S  + ++ I + +GL           +       
Sbjct: 28  LAKLAGNPQEKL--RFIHVAGTNGKGSTCAMLESIYRHAGLKVGLFTSPHLVAFGERIQI 85

Query: 159 DNRLTTPSPI---------YLAKALSYLSSQGVTHVSVEASSHGLDQ------------H 197
           +  L +   I          L +  +         V++ A S+   Q             
Sbjct: 86  NRELISEEEIIRLVEEMKALLQEFPADEHPTFFEVVTIMALSYFARQKCDVVIWETGLGG 145

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
           RLD   ++    + +     D+ +               ++    P I   DD  +  ++
Sbjct: 146 RLDATNIVTPLVSVITNIQFDHQKWLGDTLAKIAFEKAGIIKPRVPVITAVDDPEALRIL 205

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
            +         S+                   Q            L           A+ 
Sbjct: 206 FKTAQEKAAPFSLITWA---------------QTEFHPMQGLTLPLLGEHQRLNAATAVH 250

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
           A     +    S   +         PGR + V     G ++ +D AH   S E +   + 
Sbjct: 251 AVMAARSCIPVSDETIRKGLSGVKWPGRLQLV-ERKNGQKVLLDGAHNIGSAEALKTALN 309

Query: 378 TIT-SGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP-RSEDPEKIRAEIIHG 435
           T   + R  +V G   D+D      M +I   LA   ++   N  R+  P ++       
Sbjct: 310 TYFATRRPTLVMGILSDKDAH---PMCEIIAPLAGRILLVPVNSQRTILPRELIPVCRRA 366

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            P    +  R   ++ A+++  +   + V G
Sbjct: 367 NPDVEVRECRS--LKEALDVAAEDPFVAVTG 395


>gi|294627725|ref|ZP_06706307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598077|gb|EFF42232.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 477

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 85/431 (19%), Positives = 139/431 (32%), Gaps = 52/431 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V     + + T+ +         
Sbjct: 224 LLCIDDPEVAALAGKTPRH--VMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LE    +  RF    E         R+ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTGTGARVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDPEKIRA-------EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHE 470
             P  E P                G    +  G         +++L   D+L++ G G  
Sbjct: 401 VYPAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLLDVLQDGDLLLMMGAGDI 460

Query: 471 TV---HIVTNG 478
                HI+ NG
Sbjct: 461 GYVAQHIINNG 471


>gi|145297832|ref|YP_001140673.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850604|gb|ABO88925.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 456

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 106/354 (29%), Gaps = 24/354 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  + + + L    +       +F    RL +        
Sbjct: 101 QDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFL-IGGVPGNFPVSARLGS-------A 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               + +        +  S  +  H             NL  DH D      A       
Sbjct: 153 PFFVIEADEYDCAFFDKRSKFVHYH------PRTLVMNNLEFDHADIFPDLAAIQRQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +          ADD  +     R       V  VG         K+    +  +V 
Sbjct: 207 LMRTVPSNGRVLFPQADDNLT---AVRKMGCWSEVELVGQDDAKWKAVKLADDGSAFEVW 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    K  +  +   GE  V N L+A       G+     +  L +      R E  G  
Sbjct: 264 LD-GSKQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALRQFKSPKRRMELKG-E 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLA 410
             G  +Y D+AH   ++E  L  +R  +   RI+ V     +  + G          D A
Sbjct: 322 VAGISVYDDFAHHPTAIETTLGGLRAKVGKARILAVLEPRSNTMKLGVHKEELAACFDGA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D            D  ++ A +      F E       I   +      D +++
Sbjct: 382 DEVFFFQPPNIGWDLGEVTAHMSRPAKVFNELETL---INRLVAECRDGDHILI 432


>gi|332991941|gb|AEF01996.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas sp. SN2]
          Length = 482

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 138/441 (31%), Gaps = 71/441 (16%)

Query: 50  VGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF--LSLF 105
                DG              IVVSSA +  +           PI+     R+   L+  
Sbjct: 68  KAENVDGMD-----------VIVVSSAINEANPEIITAREQRIPII-----RRAEMLAEL 111

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQIC-QRSGLSSFQIG---PTSTISSFAQDNR 161
               +G      +AV GT GK++  S +  I  Q     +F IG    ++  ++    +R
Sbjct: 112 MRFRHG------IAVAGTHGKTTTTSLISTIFAQAQYDPTFVIGGLLNSAGTNARLGRSR 165

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                                        S     H    ++ +    TN+  DH+D + 
Sbjct: 166 YLIAEADE---------------------SDASFLH----LQPMVSVVTNIEADHMDTYG 200

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              +        F   LP    AI+  DDA  +E+  R   +        +       + 
Sbjct: 201 GDFSKVKDTFVEFLSNLPFYGQAIVCGDDANIQEISPRIGRSIITYGFEAHNDV--RAQD 258

Query: 282 VCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
           +     +   T+    ++       L G   V NAL A  +    GID   ++  L    
Sbjct: 259 ITLSFGQANFTVIRPEREPLKVTLNLTGNHNVLNALAAIAVATDEGIDDDAIVTALASFG 318

Query: 341 VVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +  RFE +G          +  DY H    ++  +   R        +V      R   
Sbjct: 319 GIGRRFEVLGDFKTSVGNVTLVDDYGHHPTEVKATIAAARA-NWPESRLVMVYQPHRFTR 377

Query: 398 KRPIMGKIALDLA--DIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAI 449
            R +       L+  D+ ++ D  P SE P      + +   I              EA+
Sbjct: 378 TRDLYEDFVNVLSTVDVLLLLDVYPASEQPIEGADSKSLCRSIRQRGQIEPVYVGGKEAL 437

Query: 450 RTAIEM-LNKQDVLVVAGKGH 469
              +   L + D+++  G G+
Sbjct: 438 PAILANILVEGDIVMTQGAGN 458


>gi|332160413|ref|YP_004296990.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607126|emb|CBY28624.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664643|gb|ADZ41287.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 460

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVS+A S  +    A   +  P++     R+   L+      +G      +AV GT
Sbjct: 48  ASVVVVSTAISADNPEIVAAREARIPVI-----RRAEMLAELMRFRHG------IAVAGT 96

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 97  HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 153

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 154 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGR 195

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +   ++       
Sbjct: 196 AVMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLK-RLDKPLMTVT 254

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI+   +L  L        RF+F+G             
Sbjct: 255 LNAPGRHNALNAAAAVAVATEEGIEGDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGS 314

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 315 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLSQ-VDVL 373

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         ++LN  D+++V G
Sbjct: 374 LMLDVYAAGEPPIPGADSRSLCRTIRNRGKLDPILVSDSDTVPEVLAQVLNGDDLILVQG 433

Query: 467 KGH 469
            G+
Sbjct: 434 AGN 436


>gi|332291237|ref|YP_004429846.1| FolC bifunctional protein [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169323|gb|AEE18578.1| FolC bifunctional protein [Krokinobacter diaphorus 4H-3-7-5]
          Length = 405

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/369 (9%), Positives = 85/369 (23%), Gaps = 11/369 (2%)

Query: 104 LFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
              S   G        + V GT+GK S +  +  + Q +G +              +   
Sbjct: 33  KLLSEYLGNPHTQFKAVHVAGTNGKGSTSHMMASVLQEAGYTVGLYTSPHLKDFRERIKI 92

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                       + ++          + S   +                 +    +    
Sbjct: 93  NG--EMASKQFVMGFVKKHKAFFEEHQLSFFEMTVGMAFAYFATKKVDIAIIEVGLGGRL 150

Query: 222 TQQAYFN----AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                          +  +        +       +  + +                   
Sbjct: 151 DATNIITPVLSVITNIGIDHTQFLGDTLPRIAAEKAGIIKENVPVVIGEYHEETEDVFST 210

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             +K  A   K      +  +            +      +        +    + + L+
Sbjct: 211 LSQKRNATLYKAYDFDLMPMQSDLIGSYQKHNIRTVQVAFSVLQGADFHVGIQHIAKGLK 270

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
            +    G            R+  D  H    L  +++ +      ++ +V G   D+D G
Sbjct: 271 NVVKNTGLLGRWQILQELPRVICDTGHNKEGLTYVIEQLSKEKYKKLHIVLGVVSDKDLG 330

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
               +  +    A       D PR  + + +R              N  EA   A +   
Sbjct: 331 ---SILPLFPSYATYYFCKPDVPRGMEVQLLRKTAETHRLNGKAYPNVKEAFSAAKKTAG 387

Query: 458 KQDVLVVAG 466
             D++ + G
Sbjct: 388 ASDLIFIGG 396


>gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali
           symbiont]
          Length = 439

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 70/396 (17%), Positives = 128/396 (32%), Gaps = 53/396 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            I+ S   +L   + +  ++  I +V +              +    I+A+TG++GKS+V
Sbjct: 68  LIIASPGIALAHPALSEAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKSTV 119

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ + +G      G                   + L K+ + L      +V +E 
Sbjct: 120 TTLVGEMARAAGWQVGVGGNIGLP-------------ALTLLKSPAQL------YVVLEL 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +K  A +  N+  DH+D +      + A      E           AD
Sbjct: 161 SSFQLET--TYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENADICVV---NAD 215

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +  V           + VG          +        + +  E         L G+
Sbjct: 216 DGMTMPVRGADRRCVSFGIDVGDYH-------LNQQQGSTWLRVKGEKVLNTDEMKLVGQ 268

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  L  A+ I  A  L+ L     +P RF+ V        I    A    S 
Sbjct: 269 HNYTNALAALALADAVNIPLASSLKALTTYSGLPHRFQLVHEAHGVRWINDSKATNVGST 328

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           E  L  ++    G + ++ G  G     K      +A        +  DN R     +  
Sbjct: 329 EAALNGLQ--VKGTLWLLLGGDG-----KGADFTPLAR------YLQGDNVRLFCFGRHG 375

Query: 430 AEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
             +    P      +   + +      +   D++++
Sbjct: 376 DALAALRPAVATCTDTLEQGMTQIAAQVQAGDMVLL 411


>gi|154492210|ref|ZP_02031836.1| hypothetical protein PARMER_01844 [Parabacteroides merdae ATCC
           43184]
 gi|154087435|gb|EDN86480.1| hypothetical protein PARMER_01844 [Parabacteroides merdae ATCC
           43184]
          Length = 435

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 111/380 (29%), Gaps = 29/380 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---- 167
                 + V GT+GK SV+  +  I ++SG           +    +        P    
Sbjct: 43  HKAYKTIHVAGTNGKGSVSHLLAAILRQSGYKVGLYTSPHLVDFRERIRVNGQKIPEEYV 102

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ--- 224
           I   +                 SS   D  R + +          GR       T     
Sbjct: 103 IDFVERHRSFFETLDPSFFELTSSMAFDYFRAEKVDYAVIEVGMGGRLDSTNIITPILSI 162

Query: 225 ----AYFNAKMRLFEELLPKESPAIIYADDAY-------SKEVMKRAHNAGCRVLSVGYQ 273
               +  + +             A I   D            V +   +A  +  ++ Y 
Sbjct: 163 ITNISLDHTQFLGDTVEKIAFEKAGIIKKDVPALVGEIDRHSVAQVFADAAVKAGTLVYF 222

Query: 274 GKFIHLKKVCAIHNKQQVTI-SVEGKDFDFLFPLPGEFQVYNALVAAGLCI---AIGIDS 329
            +   L K   + +  +  + S E            +F+    ++ A   +    + I +
Sbjct: 223 AQDEGLLKESYLMDTGEWYLDSAEYGQLFGELGGVVQFRNATTVLGAINLLNTVGVNIPT 282

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVV 387
             V E  E +  + G            ++  D  H     + +   +         + ++
Sbjct: 283 EAVREGFEHVVELTGLMGRWQVLQENPKVVCDTGHNVGGWQYLNIQLEEELKRHKHLFMI 342

Query: 388 FGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
            G   D+D      +M + A      A V    P +ED       I HG+ G I   +  
Sbjct: 343 VGMVNDKDIDGVLDLMPEKAFYFFTQASVQRAMP-AEDFAT--KAIFHGLSGTI-CNSVQ 398

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           EA+  A+    + D++ + G
Sbjct: 399 EAVEKALARAGQDDIIFIGG 418


>gi|309972750|gb|ADO95951.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R2846]
          Length = 453

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 74/267 (27%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +        +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDEIAPALGRADAVFMLQPEQLPWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|332638562|ref|ZP_08417425.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella cibaria KACC
           11862]
          Length = 446

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 68/217 (31%), Gaps = 12/217 (5%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH DY+       +A       +         + DD     + K   + 
Sbjct: 168 PDYAIMTNIDFDHPDYYTGVDDVRSAFEDFGNHVKKG---IFAWGDDEQ---LRKMQVDV 221

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLC 322
                    +    + K +          +    +   +F  PL G+  V N+L    + 
Sbjct: 222 PVYFYGTNPETDDFYAKDIKRSTTGSSFDVYYHDEFLGNFEVPLFGQHGVLNSLAVIAVA 281

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
               ID  LV + L     V  RF           I  DYAH  + +   L   R    G
Sbjct: 282 YFEKIDGDLVRKELLSFKGVKRRFTEKQVG--PVTIIDDYAHHPSEITATLDAARQKYPG 339

Query: 383 RIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD 417
           R +V         R    +    K +L+LAD   +T+
Sbjct: 340 RELVAVFQPHTFSRTIAYQDDFAK-SLELADKVYLTE 375


>gi|319760287|ref|YP_004124225.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039001|gb|ADV33551.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 482

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 103/336 (30%), Gaps = 42/336 (12%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
             A+ +V+SSA +L +           L +   R+   L       YG      +A+ GT
Sbjct: 77  NNADLVVISSAINLNNIEFQAAKR---LKIPIMRRAEVLFELMRYKYG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I   +GL                      P+ I  A   S        
Sbjct: 128 HGKTTTTAMLANIYVEAGLD---------------------PTFINGAIIRSEGVQSRFG 166

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             +       TN+  DH+  +Q    +       F   LP    
Sbjct: 167 CSCYFIIEADESDKSFLWLYPTVEIITNIDFDHMSAYQNNYEFLKKAFVEFLNHLPVYGY 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A+I  DD   + V+    N                L         +   +    K  + +
Sbjct: 227 AVICIDDPAIRSVLS-NVNRKIITYGFSKDADLCILNYHQYREKSKFTVLIKNKKKLEII 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
             +PG   V NA  + G+ I  GI   ++L  +        RFE +G  S          
Sbjct: 286 LNIPGYHNVLNATASIGVSIEEGIPDLVILRAMLNFQGTNRRFENLGFYSLKQINGRVGK 345

Query: 357 -RIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGC 390
             I  DY H    L   +  +R+     R+I+VF  
Sbjct: 346 VMIVDDYGHHPTELHATIATVRSGWPDKRLIMVFQP 381


>gi|307610451|emb|CBX00022.1| hypothetical protein LPW_17781 [Legionella pneumophila 130b]
          Length = 441

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 128/364 (35%), Gaps = 27/364 (7%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNR 161
              A  +  K+   ++AV GT GK++  S +  I  ++G+   F IG  S+  + +    
Sbjct: 81  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLG 138

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 I   +  S    +                      +       NL  DH D + 
Sbjct: 139 KGRWFVIEADEYDSAFFDKRPKF---------------MHYRPNIAVLNNLEFDHADIYP 183

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              A    +       +PK   AI   DD    EV+ R      R+ ++   G+   + +
Sbjct: 184 DLAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQF--SRIETLALSGEAEWVAE 240

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      Q   +   G   +  +PL G+F V N L A       G++  +  + LE+   
Sbjct: 241 LIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPMVAAKALEQFSP 300

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E   +N  G  +Y D+AH   ++   +  ++   SGR   +F          R  
Sbjct: 301 VKRRLEV-RSNRHGITVYDDFAHHPTAITKTIDALKR--SGRHQRIFAVMEFASYTMRT- 356

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQD 460
            G  A ++A      D     E  +    + +      +    N  E +   I+ + + D
Sbjct: 357 -GVHAAEMAHALAPVDGAYVLEPQDFNLKDFVSSWTCPYKICKNNEEIVNEIIKAVREGD 415

Query: 461 VLVV 464
            ++V
Sbjct: 416 AVLV 419


>gi|291296384|ref|YP_003507782.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus ruber DSM 1279]
 gi|290471343|gb|ADD28762.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus ruber DSM 1279]
          Length = 457

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 98/278 (35%), Gaps = 12/278 (4%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES-PAIIYADDAYSKEVMKRA 260
           ++L     TNL  DH+      +  ++      +E +   +  A     +   +  +  A
Sbjct: 167 LELDVAVLTNLEADHVSPDGQARPNYHTSFEALQEAVGSFAGRAKHVIYNGEPRWQLLDA 226

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAA 319
              G    S G      H K++       +  +  +G+        +PGE  + NAL A+
Sbjct: 227 LTQGRPRSSFGLLTGDCHAKEIALEPFGSRFELVWQGRSLGPVHLQVPGEHNITNALAAS 286

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
              +  GI    + + L +      RFE +G    G  I  DYAH +  L  +LK  R  
Sbjct: 287 AAALVAGIPFEAIQQGLYQYTGASRRFEKIG-ELNGALIVDDYAHNATKLFALLKAARNT 345

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-----EKIRAEIIH 434
                 V       R + + P+  +     AD  ++ D     E P      +I   I+ 
Sbjct: 346 GLRVRAVFQPHRYGRSEQEWPLYAQALEQ-ADETLLLDVYAAGEAPLQLTSAQIAQRILE 404

Query: 435 GIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
            +     +    +   A+    +     ++++  G G+
Sbjct: 405 HLRAKGRWASYQSWESALDYLRQSAAPGELILTIGAGN 442


>gi|227524520|ref|ZP_03954569.1| possible tetrahydrofolate synthase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088330|gb|EEI23642.1| possible tetrahydrofolate synthase [Lactobacillus hilgardii ATCC
           8290]
          Length = 216

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 7/156 (4%)

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
             L+       +  +   +LE      VVPGRFE     S+   I +D  H  + ++  +
Sbjct: 44  TWLIDFLNRKKLVYNLNQLLEDTLLNIVVPGRFEK---ISQQPVIILDGGHNPDGIQAFV 100

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGK-IALDLADIAIVTDDNPRSEDPEKIRAEI 432
           K + T+      ++      +D+     + + I+L  A   I   DN + E P +  +++
Sbjct: 101 KTVNTLYPDSEKLIINGF-LKDKSYESSVKELISLKNASFIITEPDNKQRELPPQQLSDV 159

Query: 433 IHGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +    +    +  +AI+ A+       ++ V G
Sbjct: 160 YVKLTKQTYQSFDSPTDAIQYAVSHATANTIIFVIG 195


>gi|190150723|ref|YP_001969248.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915854|gb|ACE62106.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 454

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 167 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSGGCILSAAA 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 226 DENVQNTLKMGSYSELQF----IGEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGA 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G   +G  +Y D+AH   ++
Sbjct: 282 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVKGITVYDDFAHHPTAI 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  LAD     V   +    
Sbjct: 341 AATIDALRGKVGKEQRILAVLEPRSNTMK---MGVHKEEIAPSLADANAVFVYQPDTIPW 397

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 398 AVSVITDNLTQPAKWS---ADLDELVKMIVEEAKPTDHILV 435


>gi|167469961|ref|ZP_02334665.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis FV-1]
          Length = 423

 Score = 45.7 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 84/283 (29%), Gaps = 22/283 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ A  +  I +  G     +       +F    RL       +  
Sbjct: 101 PERWVLAVAGTHGKTTTAGMLAWILEACGYEPGFV-IGGVPGNFDVSARLGNSPFFVIEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                +        V  S   L  +             NL  DH D     +A       
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMN-------------NLEFDHADIFDDIKAIQ----- 201

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                L +  P         +   +K+    GC               +  +        
Sbjct: 202 KQFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWSEQELVGETGSWFARKVSTDASVYEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  + L GE  ++N L+A      +G+  A     L        R E  G  
Sbjct: 262 LLDNNVVGEVNWSLVGEHNMHNGLMAIAAARHVGVLPADACRALGDFINASRRLELRG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGD 393
           + G  +Y D+AH   ++   L  +R+   G  RI+ V     +
Sbjct: 321 AHGVTVYDDFAHHPTAILATLAALRSKVGGTARILAVLEPRSN 363


>gi|296101251|ref|YP_003611397.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055710|gb|ADF60448.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 438

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 135/404 (33%), Gaps = 66/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    ++A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPSLSAAADAGVEIVGDIE--------LFCREAQAPVIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGKNVGVGGNIGLPALMLLDKG--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLHAAAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G       L +           +  E         L 
Sbjct: 213 ADDALTMPVRGADDRCISFGITMGDYHLNRQLGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  +  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRSSSLQALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR------ 421
           S E  L  ++    G + ++ G             GK A   +    ++ DN R      
Sbjct: 326 STEAALNGLQ--VEGTLHLLLGGD-----------GKSADFTSLKQYLSGDNIRLYCFGR 372

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  ++R EI        +     +A+R     +   D++++
Sbjct: 373 DGRELAELRPEIAE------QTETMEQAMRLIAPRVKPGDMVLL 410


>gi|319786253|ref|YP_004145728.1| UDP-N-acetylmuramate/alanine ligase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464765|gb|ADV26497.1| UDP-N-acetylmuramate/alanine ligase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 479

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 119/368 (32%), Gaps = 42/368 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I VV   R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIRDDNPELMEARSQRIPVVP--RAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLTAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   +      + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDADHLENYGGDFARLRSAFAELLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFL 303
           ++  DD     +          +     +   +  + +     + + T+ +         
Sbjct: 224 VLCIDDPEVASLAAETPRH--VMTYGTAENADVRAEDIVQEGPRMRFTLRLPEGASVPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LEK   +  RF    E         R+ 
Sbjct: 282 LALPGRHNVLNALAAAAVGWQLGVAPQAIAAALEKFAGIGRRFNDLGEVTTATGAKVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTD 417
            DY H    L  +    R     + +VV      R    R      A  L  AD  ++++
Sbjct: 342 DDYGHHPRELAAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSEADALVLSE 400

Query: 418 DNPRSEDP 425
             P  E P
Sbjct: 401 VYPAGEAP 408


>gi|71064613|ref|YP_263340.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Psychrobacter arcticus 273-4]
 gi|71037598|gb|AAZ17906.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Psychrobacter arcticus 273-4]
          Length = 505

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 93/340 (27%), Gaps = 31/340 (9%)

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            S  +G     S  + +             A     S+ V +    A  + L+    D  
Sbjct: 155 HSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIF 214

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             +    T           T +    A     E+ L K     I+        +      
Sbjct: 215 ADLDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRRE 274

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGL 321
                 S          + + A  ++  V+ +   +      + + G   V NALVA   
Sbjct: 275 DSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAA 334

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTIT 380
              IG+        L     +  R E +G +     ++ D+AH   ++   L    + + 
Sbjct: 335 AYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDFAHHPTAITTTLDGAKKKLA 393

Query: 381 SGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADI---------------AIVTDDNPRSED 424
             R+  +     +  + G        +  LAD                 I   DN    +
Sbjct: 394 DRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLEWGLKEVI---DNATIAN 450

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P     +++  +            I+         D +V+
Sbjct: 451 PSIGSQQVLSSVDDI---------IKHICTHAKAGDAIVI 481


>gi|317476598|ref|ZP_07935843.1| FolC protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907194|gb|EFV28903.1| FolC protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 417

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/363 (11%), Positives = 92/363 (25%), Gaps = 10/363 (2%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSP 167
           +       + V GT+GK S +  +  I Q +G           +    +        P  
Sbjct: 41  HPHRSFRTIHVAGTNGKGSCSHTLAAILQEAGYRVGLYTSPHLVDFRERIRINGQPIPEK 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +             H S    +  +        K+            +D         
Sbjct: 101 YVVDFVEKERDFFEPLHPSFFELTTAMAFRYFADEKVDVAVIEVGLGGRLDCTNIIHPDL 160

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                +  + +      +       +  +                        +  A   
Sbjct: 161 CIITNISFDHVQFLGDTLAKIAGEKAGIIKAGIPVVIGETTPETKPVFLQKAAEEKAPII 220

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPG 344
             + T+  +            + +    ++AA   +      ID   +      +  + G
Sbjct: 221 FAEDTMKNDYPKMKTELQGLYQIKNTRTILAALPLLKEAGYRIDEQSIRSGFAHVCELTG 280

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMG 403
                        +  D  H    +  I++ ++  T  ++ ++ G   D+D      ++ 
Sbjct: 281 LMGRWQKLQDAPTLICDTGHNVGGITYIVEQLKQQTYRQLHIIIGMVNDKDISGVLSLLP 340

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           K A      A V     R+   E++               +   A+  A E  + +D + 
Sbjct: 341 KDATYYFTKASVK----RALPAEELCKLAAQNGLQGSCYPDVPAAVTAAQEKSHPEDFIF 396

Query: 464 VAG 466
           V G
Sbjct: 397 VGG 399


>gi|126665245|ref|ZP_01736228.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
 gi|126630615|gb|EBA01230.1| UDP-N-acetylmuramate--alanine ligase [Marinobacter sp. ELB17]
          Length = 486

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 67/203 (33%), Gaps = 6/203 (2%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            +  +    TN+  DH+D +             F   LP    A++  DD Y +E++ R 
Sbjct: 184 HLTPLISVVTNIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCIDDPYVREILPRI 243

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE--GKDFDFLFPLPGEFQVYNALVA 318
                    +         + + +   + +  +       D      +PG   V NAL  
Sbjct: 244 SRT-IITYGIDNPEADYRAENIVSDGLRTRFLVKRPGPRADLQVELKMPGRHNVLNALAV 302

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNSLEMILKN 375
             +    G+D A +   L     V  RF+  G          +  DY H    +  +++ 
Sbjct: 303 IAVATDDGVDDASIGRGLAGFAGVGRRFQVYGDYPIAKGSITLVDDYGHHPTEVAAVIRA 362

Query: 376 IRTITSGRIIVVFGCGGDRDQGK 398
            R    GR +V+        + +
Sbjct: 363 ARDAWPGRRVVMLYQPHRFSRTR 385


>gi|311748591|ref|ZP_07722376.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Algoriphagus
           sp. PR1]
 gi|126577115|gb|EAZ81363.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Algoriphagus
           sp. PR1]
          Length = 450

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 86/299 (28%), Gaps = 29/299 (9%)

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             + L         +E SS  +D       K      TN+  DH+D ++ +   +     
Sbjct: 141 WAAQLLEGDHDWWVIECSSFQID--GFVCFKPAVALLTNITPDHLDRYEYKVDNYIQSKF 198

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              + +  E   I    D  ++  +K                       +    +     
Sbjct: 199 GLFKNMSDEDQVIFNQTDPLTEIGLKTLSVKPKTYWFSSTS-------NINNGGSLNGEF 251

Query: 293 ISVEGKDFDFLFPLPGE-----FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +  +  D     PL          + NAL A  + + +G+    + + L      P R E
Sbjct: 252 LHWQLDDKVVQIPLSAMSLQGEHNIQNALCAGLIALLVGVKKDTIQQSLGSFTNAPHRME 311

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK-IA 406
            V        I         +    L   +         +    G  D+G      K I 
Sbjct: 312 LVREIEGVKFINDSKGTNVEATAYALDAFQNP-------LIWIAGGVDKGNDYQTVKSIV 364

Query: 407 LDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +     I +  DN      EK++      +    E  +  EA+R    +    DV+++
Sbjct: 365 EEKVKCLICLGKDN------EKLKKAFHPLVGEIKETQDIKEAVRWGQLLAVPGDVVLL 417


>gi|116330215|ref|YP_799933.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116123904|gb|ABJ75175.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 527

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 12/196 (6%)

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +        ++   + K++ F    PGE  + NAL A   C   G     ++  + +   
Sbjct: 325 IYYTIESGNLSFRFQEKEYSFFLKYPGEHYLKNALAAILACSEAGAPVTELVSQISEYSG 384

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGG-DRDQGKR 399
           V  R E++G +  G  +Y DY H    ++ +++++  +  +GR I++F      R Q   
Sbjct: 385 VSRRLEYLG-SKNGIEVYDDYGHHPTEIKAVIQSMEGLKKNGRAIILFQPHRYTRTQNLY 443

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
               + +LD  +   +    P  EDP      E I   +   +   I      + I    
Sbjct: 444 KEFAE-SLDTGESVYLLPIYPAGEDPIEGVGTELILNSMK--VSAKILPKEISDGIFILK 500

Query: 454 EMLNKQDVLVVAGKGH 469
             L   D L+  G G+
Sbjct: 501 NSLKPGDKLITLGAGN 516


>gi|116329177|ref|YP_798897.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121921|gb|ABJ79964.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 527

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 12/196 (6%)

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +        ++   + K++ F    PGE  + NAL A   C   G     ++  + +   
Sbjct: 325 IYYTIESGNLSFRFQEKEYSFFLKYPGEHYLKNALAAILACSEAGAPVTELVSQISEYSG 384

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGG-DRDQGKR 399
           V  R E++G +  G  +Y DY H    ++ +++++  +  +GR I++F      R Q   
Sbjct: 385 VSRRLEYLG-SKNGIEVYDDYGHHPTEIKAVIQSMEGLKKNGRAIILFQPHRYTRTQNLY 443

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
               + +LD  +   +    P  EDP      E I   +   +   I      + I    
Sbjct: 444 KEFAE-SLDTGESVYLLPIYPAGEDPIEGVGTELILNSMK--VSAKILPKEISDGIFILK 500

Query: 454 EMLNKQDVLVVAGKGH 469
             L   D L+  G G+
Sbjct: 501 NSLKPGDKLITLGAGN 516


>gi|332286762|ref|YP_004418673.1| L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
           [Pusillimonas sp. T7-7]
 gi|330430715|gb|AEC22049.1| L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
           [Pusillimonas sp. T7-7]
          Length = 452

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 115/362 (31%), Gaps = 41/362 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +++LAV GT GK++ +S +  I + +G                  N L       L  + 
Sbjct: 103 QHVLAVAGTHGKTTSSSMLAWILEHAGRR---------------PNFLIGGIADDLQVSA 147

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDYHQTQQAYFNAKMR 232
            Y + + +  +  +         R   +     +    NL  DH D      A    +  
Sbjct: 148 RYQAERPLFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIQ-TQFH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P +   +  AD A   +V++R           G        +   + H      
Sbjct: 207 HLVRTIPSQGRIVRPADSAALDQVLERGCWTPVHTFGPG-----GQWEAQASEHASHFPV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                      + L GE    NAL A      +G+     +E L     V  R E  GT 
Sbjct: 262 THQGRHAGTIRWALTGEHNRMNALAALAAAEHLGVGPQAGIEALSAFRGVKRRMELRGTV 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--- 409
                +Y D+AH   ++   L+ +R     R I+         +     +G +A  L   
Sbjct: 322 RE-VDVYDDFAHHPTAIATTLEGLRKQVGKRRILAVLEP----RSNTMKLGAMAARLPEA 376

Query: 410 ---ADIAIVTDDNPR----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
              AD+      +        DP ++ + +      + +    + AI  A       D +
Sbjct: 377 LAQADLVFCFGADSGKHALGWDPAQVLSPLGARASSYSDLDKMVGAICQA---AQPGDSV 433

Query: 463 VV 464
           +V
Sbjct: 434 LV 435


>gi|225849192|ref|YP_002729356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643195|gb|ACN98245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 424

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 105/278 (37%), Gaps = 15/278 (5%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L   +    K       N+ +DH+D+H+  + Y  +K ++F+    ++   + 
Sbjct: 130 LELSSFQLYSTKTF--KPKIAVILNISKDHLDWHKKMKHYILSKFKIFKNQTEEDYLILN 187

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           Y DD   K++  ++      +  +    K I+LK +             E  D      L
Sbjct: 188 Y-DDNCLKQIKAKSQIYYFSLNQLPQDKKGIYLKNIEKSGEYILTLQDKEKIDIKVKTSL 246

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G   + N + +  +    G+D   VL+ +++   +  R EFV + +         A T 
Sbjct: 247 VGLHNLQNIMASLVVSYLYGLDLDKVLKVIQEFKPLSHRIEFVSSINGVSFYNDSKATTV 306

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            ++E  + +       + +V+   G ++      +  K+   +    I+        D  
Sbjct: 307 QAVEKAIDSFD-----KNVVLILGGINKGGDFSVLKDKLKQKVKKAIII------GRDKN 355

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +I++ I           +  EA+  +     K D +++
Sbjct: 356 QIKSMIEEY-TQVELADSLEEAVIKSYNTAEKGDTVIL 392


>gi|254434589|ref|ZP_05048097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Nitrosococcus oceani AFC27]
 gi|207090922|gb|EDZ68193.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Nitrosococcus oceani AFC27]
          Length = 448

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 67/217 (30%), Gaps = 4/217 (1%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +       NL  DH D     +A    +       +P     ++ + D     V+   
Sbjct: 163 HYRPRTLILNNLEYDHADIFPHLEAIQQ-QFHYLVRTVPNNGLILVPSGDKALATVLSMG 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  + +          +  A                   +PL G   V N L A G
Sbjct: 222 CWTPVVNMGIAGGVGSALAARAVADDGSNFEVWYENSCQGQVHWPLLGHHNVANGLAAIG 281

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TI 379
                G+      + LE+   V  R E  G    G  +Y D+AH   ++   L  +R  +
Sbjct: 282 AARHAGVPIGQGCQALERFQGVRRRLEVCG-KVNGVTVYDDFAHHPTAISKTLAGLRARV 340

Query: 380 TSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIV 415
              RII V     +  + G        AL LAD  ++
Sbjct: 341 GKARIIAVLEPRSNTMKLGVHKDSLAPALALADRVLI 377


>gi|193068240|ref|ZP_03049204.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E110019]
 gi|192958519|gb|EDV88958.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E110019]
          Length = 422

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 24/132 (18%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGRF+ V  + R   +  D AH  ++ E +   ++ +  +GR++ V G   D+D      
Sbjct: 287 PGRFQIVSESPR---VIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKD------ 337

Query: 402 MGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
              IA  LA +  V DD        PR         +++  +       +  +A    + 
Sbjct: 338 ---IAGTLAWLKSVVDDWYCAPLEGPRG----ATAEQLLEHLGNGKSFDSVAQAWDAVMA 390

Query: 455 MLNKQDVLVVAG 466
               +D ++V G
Sbjct: 391 DAKAEDTVLVCG 402


>gi|189467065|ref|ZP_03015850.1| hypothetical protein BACINT_03448 [Bacteroides intestinalis DSM
           17393]
 gi|189435329|gb|EDV04314.1| hypothetical protein BACINT_03448 [Bacteroides intestinalis DSM
           17393]
          Length = 417

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 90/363 (24%), Gaps = 10/363 (2%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSP 167
           +     + + V GT+GK S +  +  I Q +G           +    +        P  
Sbjct: 41  HPHRNFHSIHVGGTNGKGSCSHTLAAILQEAGYRVGLYTSPHLVDFRERIRVNGQSIPKE 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +       +     H S    +  +         +            +D         
Sbjct: 101 YVVRFVEKERNFFEPLHPSFFELTTAMAFRYFANEHVDVAVIEVGLGGRLDCTNIIHPDL 160

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                +  +        +       +  +                       ++V A   
Sbjct: 161 CIITNISFDHTQFLGNTLEKIASEKAGIIKSGIPVVIGETTPETKPVFTKKAREVDAPIF 220

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQV-YNALVAAGLCIAIGIDSALVLEHLEKLHVVP--G 344
             +     E    +       + +  +  L A       G + +         HV    G
Sbjct: 221 FAEENQKDEYPGLECELKGLYQTKNTHTLLTAIAQLQQAGYNLSEQAVRSGFAHVCELTG 280

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMG 403
                        +  D  H    +  I + ++  +  ++  + G   D+D  G   ++ 
Sbjct: 281 LMGRWQKLQDAPTLICDTGHNVGGITYITEQLKQQSYRKLHFIIGMVNDKDIHGVLALLP 340

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           K A      A V    P +E         + G        +   A++ A E    +D + 
Sbjct: 341 KDAEYYFTKASVKRALPENELSRLASEAGLQG----SCYPDVPSAVQAAQEKSLPEDFIF 396

Query: 464 VAG 466
           V G
Sbjct: 397 VGG 399


>gi|166032337|ref|ZP_02235166.1| hypothetical protein DORFOR_02040 [Dorea formicigenerans ATCC
           27755]
 gi|166028060|gb|EDR46817.1| hypothetical protein DORFOR_02040 [Dorea formicigenerans ATCC
           27755]
          Length = 437

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 8/116 (6%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIA 406
                 +     +D AH  ++   +  +I     G+ I ++ G   D++  K   +  I 
Sbjct: 294 RFTCLRKNPVFIIDGAHNEDAAIKLRTSIERYFKGKEIQLIMGVFQDKEYEK---ITSIL 350

Query: 407 LDLADIAIVTDDNP---RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
             LA     T + P   RS    K+             K +   A+ +A       
Sbjct: 351 CPLAKKVY-TVELPNKARSLSAGKLADCARKYCEEAEAKDSIQSAVESATAACGAG 405


>gi|77165810|ref|YP_344335.1| UDP-N-acetylmuramate,
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|76884124|gb|ABA58805.1| UDP-N-acetylmuramate,
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
          Length = 460

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 67/217 (30%), Gaps = 4/217 (1%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             +       NL  DH D     +A    +       +P     ++ + D     V+   
Sbjct: 175 HYRPRTLILNNLEYDHADIFPHLEAIQQ-QFHYLVRTVPNNGLILVPSGDKALATVLSMG 233

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                  + +          +  A                   +PL G   V N L A G
Sbjct: 234 CWTPVVNMGIAGGVGSALAARAVADDGSNFEVWYENSCQGQVHWPLLGHHNVANGLAAIG 293

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TI 379
                G+      + LE+   V  R E  G    G  +Y D+AH   ++   L  +R  +
Sbjct: 294 AARHAGVPIGQGCQALERFQGVRRRLEVCG-KVNGVTVYDDFAHHPTAISKTLAGLRARV 352

Query: 380 TSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIV 415
              RII V     +  + G        AL LAD  ++
Sbjct: 353 GKARIIAVLEPRSNTMKLGVHKDSLAPALALADRVLI 389


>gi|50122736|ref|YP_051903.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|59798236|sp|Q6D0I4|MURC_ERWCT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49613262|emb|CAG76713.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 486

 Score = 45.7 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA +  +       +   P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVI-----RRAEMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVTSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQ 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E++ R                 +   +         +    +    +  
Sbjct: 227 AVMCIDDAVIRELLPRVGRHITTYGFSDDADVRVAGYRQTGAQGHFTLE-RKDKTLLNVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  A  +    GID   +L  LE+      RF        E V   S  
Sbjct: 286 LNAPGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTSRRFDFLGEYPLELVNGQSGT 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + +V+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         + L  +D+++V G
Sbjct: 405 LMLDVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTDMDTLPELLSQALRGEDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|227538303|ref|ZP_03968352.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241818|gb|EEI91833.1| UDP-N-acetylmuramate--L-alanine ligase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 452

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 5/175 (2%)

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYN 314
           ++K       ++   G     ++ + +     +             D    +PG   V N
Sbjct: 221 IVKTGLPFKGQISYSGKGEGDVYAENIHVRDGEFYFDYVHPEGKISDIHLGIPGIHNVEN 280

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           A+ A      +GI  A ++  L     V  RFE     +       DYAH    L   + 
Sbjct: 281 AVAAITAARLLGIADAKIVTALSTFKGVKRRFE-YIVRNPQTIYIDDYAHHPEELRAFIS 339

Query: 375 NIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           ++R +   + + V        R +       ++   +AD  ++ +  P  E P +
Sbjct: 340 SMRKLYPTKKLTVVFQPHLFSRTRDFVDGFAEVLA-MADELLLMEIYPARELPIE 393


>gi|297199066|ref|ZP_06916463.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           sviceus ATCC 29083]
 gi|197715981|gb|EDY60015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           sviceus ATCC 29083]
          Length = 472

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 127/374 (33%), Gaps = 46/374 (12%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A RL G      LA+TGT+GK++    +  I + +GL +  +G               
Sbjct: 105 ELAWRLRGPDAAPWLAITGTNGKTTTTQMLASILKAAGLRTAAVGNIG------------ 152

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                 ++   + L  +    ++VE SS+ L       ++  + +  NL  DH+D+H + 
Sbjct: 153 ------VSLLDAVLGDEQYDVLAVELSSYQLHW--APSLRAHSAAVLNLAPDHLDWHGSM 204

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           +A   A  +       + +     AD A    V +     GCR +             V 
Sbjct: 205 EA--YAADKGRIYEGNRVACVYNVADKATEDLVREADVEEGCRAIGFTLGTPGPSQLGVV 262

Query: 284 AIHNKQQVTISVEGKDFDF-----LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                 +  +    K+            P    + NAL AA L  A G+ +  V + L  
Sbjct: 263 EGILVDRAFVEDRHKNAQELAEVSDVNPPAPHNIANALAAAALARAFGVPARAVRDGLRD 322

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
                 R   V      G +    A  +++ E  L    +      IV    G  +    
Sbjct: 323 FTPDAHRISHVADVDGVGYVDDSKATNTHAAEASLAAYES------IVWIAGGLAKGATF 376

Query: 399 RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIE------AIRT 451
             ++ K A  L  + ++       +D   IR  +    P       +R +      A++ 
Sbjct: 377 DELVAKSAKRLRGVVLI------GQDRALIREALARHAPEVPVVDLDRTDTGAMLAAVQE 430

Query: 452 AIEMLNKQDVLVVA 465
           A  +    D +++A
Sbjct: 431 ASRLAVAGDTVLLA 444


>gi|308272541|emb|CBX29145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 481

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 72/228 (31%), Gaps = 19/228 (8%)

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R  +             +                +        F   L GE  + NAL  
Sbjct: 244 RNSSCKIEKYGKNSDSDWKLGSFRVEPPWTFFEVMKKGKAFGSFKTKLIGEHNLLNALSV 303

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                 + +    + + LE    V  R E  G   +G  +  D+AH   +++  +K +R 
Sbjct: 304 IAAADNLKVPVDTIHDALETFEGVKRRQEIRG-ERKGITVMDDFAHHPTAVKETIKAVRP 362

Query: 379 ITS-GRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTDD-----NPRSE--DPEK 427
               GR+I VF    +     R +   +   + D ADI  ++        P  E    EK
Sbjct: 363 FYPDGRVIAVFEPRTN--SSMRKVFQDVYPLSFDKADIVCISKPPLLGKIPFDERFSSEK 420

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
           +  ++           N    I   ++     D++++   G     HE
Sbjct: 421 LVQDLKIMGKDAYFFSNTQAIIDFIVKAGKSGDLVLIMSNGGFENIHE 468


>gi|258593038|emb|CBE69349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [NC10 bacterium
           'Dutch sediment']
          Length = 460

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 137/400 (34%), Gaps = 50/400 (12%)

Query: 68  AEAIVVSSAYSLQDF--SATIRSNTPIL-VVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
           A+ +VVS    L++        +  P++  V          A R         + +TGT+
Sbjct: 70  ADLVVVSPGIDLREPRFRRVREAGIPLIGEV--------ELAYRYSD---ATFIGITGTN 118

Query: 125 GKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           GKS+  + +  + +++GL S+  G   T         L     +                
Sbjct: 119 GKSTTTTLIGAMLKQAGLPSYVAGNIGTPLCRVAP-SLAAGECV---------------- 161

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
              E SS  L+   +D  +       NL  DH+D +   + Y+ AK R+FE        A
Sbjct: 162 -VAELSSFQLET--IDEFRPRVALLLNLAPDHLDRYDQVEDYYRAKARIFEN-QRPSDFA 217

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +I ADD    +V  +A                 +++    +     V   +  K      
Sbjct: 218 VINADDPLVLQVSAQARGRRIAFSRTRPLDTGAYVEDDQLMLALDGVREVICRKS---EL 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            + G   + NAL A       G  +  +   L     +  R EFV   +    I      
Sbjct: 275 KIQGVHNLENALAAGLAAAVAGTPTTAIRIALTSFEGLEHRLEFVAEIAGVRYINDSKGT 334

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              ++   L++         +V+   G D+     P++  +   +  + ++       E 
Sbjct: 335 NVGAVVRSLESFT-----NPVVLIAGGRDKHGDFAPLIPLVRERVKRLILI------GEA 383

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            E +R  ++  +       +  EA+R A    +  +V+++
Sbjct: 384 AETLRR-MLASVCPTEVVSSLEEAVRRAAAAASPGEVVLL 422


>gi|212212655|ref|YP_002303591.1| dihydrofolate synthase [Coxiella burnetii CbuG_Q212]
 gi|212011065|gb|ACJ18446.1| folylpolyglutamate synthase [Coxiella burnetii CbuG_Q212]
          Length = 416

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 103/370 (27%), Gaps = 19/370 (5%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ V GT+GK SV   ++ I   +G           +    +      P+   L
Sbjct: 33  NNFACPVVTVAGTNGKGSVVKSLESIYLAAGYKVAAYTSPHLLQFNERLRLNGEPATDEL 92

Query: 171 AKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFN 228
                        H  +       L    +   + +      +G           +    
Sbjct: 93  FIEAFKFIEDNRNHQPLSFFEFTTLAIFYICKKQNLDILLLEVGLGGRLDAVNIVEPDVT 152

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  +                +  + +     G          + +HL +      +
Sbjct: 153 VITTIDIDHTDWLGEDRESIGREKAGIIRRHKPVIGGDPNLPNSVYEQVHLLEAPFYQLE 212

Query: 289 QQVTISVEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +        +++ +  P                +  +L+      +    S   L    K
Sbjct: 213 KDFFAVSTKENWQWQGPTQDYQGLPLPSLKIENIATSLMVIHCLQSQLPVSQHSLIAGIK 272

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRD-Q 396
             V+PGRFE          I  D AH   +   + + +R     GR + V G   D+D  
Sbjct: 273 NAVLPGRFE---WIQTPAPIVFDVAHNPQATAYLSEQLRKTDHAGRTLGVVGMLRDKDIP 329

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           G    M           +       S + + + +E+   +       +  +A + A+E  
Sbjct: 330 GALKPMLSCIDQWYAGTLSESRGATSANLQNVLSELQ--VENCYNFDSVADAFKKAVEDC 387

Query: 457 NKQDVLVVAG 466
             QD +VV G
Sbjct: 388 RPQDRIVVFG 397


>gi|332160410|ref|YP_004296987.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607129|emb|CBY28627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664640|gb|ADZ41284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859323|emb|CBX69670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica W22703]
          Length = 444

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 135/400 (33%), Gaps = 52/400 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +              ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSEAAEAGVEIVGDIE--------LFCRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +             + L K  + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVPALNLLKQ-------LSLQKHENQLV-------VL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH D +      + A       +       ++ 
Sbjct: 164 ELSSFQLET--TSSLRASAATILNVTEDHTDRYPFGLQQYRAAK---LRIYENAKVCVVN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V    +      + VG         ++          +  E         L 
Sbjct: 219 ADDALTMPVRGADNRCISFGVDVGDYHLNKQQGEIWL-------RVRGEKVLNTREMKLT 271

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+GI  +  L+ L     +P RF+ V  ++    I    A    
Sbjct: 272 GRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRFQLVFEHNGVRWINDSKATNVG 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +       E 
Sbjct: 332 STEAALDGLP--VDGTLHLLLGGDGKSADFSGLTRFLQG-------DHIKIYCFGRDGEQ 382

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 383 LAELRPEVSQ------LTETMEQAMVLLAKSLAPGDMVLL 416


>gi|294677022|ref|YP_003577637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
 gi|294475842|gb|ADE85230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
          Length = 466

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 125/420 (29%), Gaps = 68/420 (16%)

Query: 67  GAEAIVVSSAYS------LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP--ENIL 118
           G  A++ S              +A + +  P+   ++   F   +A+  +         +
Sbjct: 66  GIAALITSPGIPHLYPRPNPVIAAAMAAGVPV--DNDIGLFFRSWATAGWDDFDVTPRTV 123

Query: 119 AVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
            +TG++GKS+  + +  I + +G ++   G                   + L        
Sbjct: 124 CITGSNGKSTTTALIHHILKHAGRATQMAGNIGRGVLDLDPPEDGEVVVLEL-------- 175

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
                      SS+  D  R   +      FTNL  DH+D H     YF AK RLF E  
Sbjct: 176 -----------SSYQTDLAR--ALTPDIAVFTNLSPDHMDRHSGMGGYFAAKRRLFAEGA 222

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P  +       D      +      G     V        L         ++  ++   K
Sbjct: 223 PDRAVI---GVDEPEGVYLANQMAMGATDDRVIRVSSAKKLGDFGWSVFARKGFLAEWRK 279

Query: 299 -------DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                  D   +  LPG     NA  A   C ++G+   L+ E       +P R + +  
Sbjct: 280 GRQVASIDLRGVKALPGAHNHQNACAAYAACRSLGLAPKLIEEAFHSFGGLPHRSQTIAE 339

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD 411
                 +    A   +S    L+    I   R IV            +P++G +      
Sbjct: 340 KRGVRYVNDSKATNVDSAAKALEAFSNI---RWIVGGMGKEGGVSALKPLLGSV-----K 391

Query: 412 IAIVTDDNPRSEDPE------KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                  + R    E      +I   +   +    E+                 D +++A
Sbjct: 392 KTYFIGHSGRDFALELAPLEHEICETMERAVARAAEEA-------------EPGDTVLLA 438


>gi|145635327|ref|ZP_01791030.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittAA]
 gi|148825604|ref|YP_001290357.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittEE]
 gi|229847244|ref|ZP_04467347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 7P49H1]
 gi|145267471|gb|EDK07472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittAA]
 gi|148715764|gb|ABQ97974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae PittEE]
 gi|229809787|gb|EEP45510.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 7P49H1]
          Length = 453

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 74/267 (27%), Gaps = 12/267 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A            + +  PA      + S++  K  
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQ-----RQFHHMIRTIPASGLVLSSASEQSAKET 230

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
              GC               +                K  +  + + G+  ++NAL+A  
Sbjct: 231 LALGCWSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMHNALMAIA 290

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+      + L        R E  G       +Y D+AH   ++   L  +R   
Sbjct: 291 AAHHTGVAIEDACKALGSFVNAKRRLEVKG-EVNSITVYDDFAHHPEAILATLTALRDKV 349

Query: 381 SG--RIIVVFGCGGDRDQ-GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP 437
            G  RI+ V     +  + G        AL  AD   +        +   I  +    + 
Sbjct: 350 GGGVRILAVLEPRSNTMKMGVHKDEIAPALGRADSVFMLQPEQLPWEVADIANQ---CVQ 406

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N    +   +      D ++V
Sbjct: 407 PAYWNANLDRLVDMIVAEAQPTDHILV 433


>gi|15595162|ref|NP_212951.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi B31]
 gi|216264426|ref|ZP_03436418.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
 gi|3914076|sp|O51757|MURC_BORBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2688761|gb|AAC67166.1| UDP-N-acetylmuramate--alanine ligase (murC) [Borrelia burgdorferi
           B31]
 gi|215980899|gb|EEC21706.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
          Length = 468

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 129/417 (30%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+       + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +   +  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A    +   L K    II 
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEA-FLQYINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +DD    ++ ++ +     + S G              +           ++VE K   F
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSEYFCFSFLGLLNVELKTVLF 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L     +    +          D    ++ + K +    R   V     G     DY
Sbjct: 286 HNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-- 418
           AH    ++  L  I+     + I++        R +       ++    ADI I+ +   
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSA-ADILILHNIYL 404

Query: 419 ------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNRENFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|326562513|gb|EGE12830.1| bifunctional protein FolC [Moraxella catarrhalis 103P14B1]
          Length = 442

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 108/389 (27%), Gaps = 56/389 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---------- 167
             V GT+GK S    +  IC+  GL +        +S   +                   
Sbjct: 53  FTVAGTNGKGSTTKTIAAICEACGLKTALYQSPHLVSFTERICINGNEISESDLVAAFEA 112

Query: 168 ---------IYLAKALSYLSSQGVTHVSVEASSHGLDQH------RLDGIKLIAGSFTNL 212
                    + L+       +        +     L+         ++ I       TN+
Sbjct: 113 VENARVAKNVTLSFFEMTTLAAFWHFNQKKCDVWVLEIGLGGRLDVVNIINPDVAVITNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G DH+D+          +                         ++               
Sbjct: 173 GIDHVDWLGDDIERIGQEKAGIIR--------------ENIPVILGARQLPNSVHELANR 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K +H   V   + +Q  T            P P           A +  +        
Sbjct: 219 LTKHVHQLGVNYDYMEQDETWIFSNAALTIQLPKPKLSLQNAVNAVAAVLESGIKIHLDS 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--------RI 384
           +        + GRF+    N        D AH S+ +   L                 ++
Sbjct: 279 VIDGLHQVQLAGRFDQRIIN--DRHWIFDVAHNSHGISFFLAQWADEWHKHKKIYPDAKL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD-----LADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            V+F   GD+D      + K+ALD     + D ++   ++PR+ D + +   +   I   
Sbjct: 337 KVIFSMLGDKDVDAVLEVIKVALDDKKISIHDWSVAAINHPRAMDLQTLLGHVHTHIQPS 396

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 +  +A ++     + QD++VV G
Sbjct: 397 NLKIYQDLAQAAQSVSTDASTQDLIVVFG 425


>gi|291299332|ref|YP_003510610.1| FolC bifunctional protein [Stackebrandtia nassauensis DSM 44728]
 gi|290568552|gb|ADD41517.1| FolC bifunctional protein [Stackebrandtia nassauensis DSM 44728]
          Length = 428

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 4/139 (2%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVV 387
                         PGR E V        +++D AH   +   +   +  I  + R+I+V
Sbjct: 276 DDEAAWRCLSKFTAPGRCEIVRRRG-KAAVWLDGAHNPAAASALATALAEIPGTARVILV 334

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
            G   D+D     ++  +A       +    N R  DP++ R  +           N  E
Sbjct: 335 AGIAADKDTDG--VLAALAPVTHRAVLAPVPNARGGDPQRHRHTLAAHGIRPYLAANADE 392

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A+  A ++  ++DV++V G
Sbjct: 393 ALDMADQLARQRDVVLVTG 411


>gi|195941036|ref|ZP_03086418.1| putative ligase [Escherichia coli O157:H7 str. EC4024]
          Length = 457

 Score = 45.7 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 99/363 (27%), Gaps = 44/363 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
              ++AV GT GK++ A     I +  G      G          D         +    
Sbjct: 102 DRWVVAVAGTHGKTTTAGMATWILEACGYK---PGFVIGGVPGNFDVSARLGDSPFFVIE 158

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                       S                        NL  DH D     +A        
Sbjct: 159 ADEYDCAFFDKRSKFV-----------HYCPRTLILNNLEFDHADIFDDLKAIQ-----K 202

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               L +  P         +   +K+    GC         +     K       +   +
Sbjct: 203 QFHHLVRIVPGQGRIILPENDINLKQTLAMGCWSEQELVGEQGHWQAKKLNADASEWEVL 262

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               K  +  + L GE  ++N L+A      +G+  A     L        R E  G  +
Sbjct: 263 LDGEKVGEVKWGLVGEHNMHNGLMAIAAARHVGVLPADAANALGTFINARRRLELRG-EA 321

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
            G  +Y D+AH   ++   L  +R    G  RI+ V        +     MG    DL  
Sbjct: 322 NGVTVYDDFAHHPTAILATLAALRGKVGGTARILAVLEP-----RSNTMKMGICKDDLAP 376

Query: 410 ----ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI----RTAIEMLNKQDV 461
               AD   +         P+ I  ++       I+  +    +       ++     D 
Sbjct: 377 SLGRADEVFLLQ-------PQHIPWQVAEVADACIQPAHWSADVDVLADMVVKAAQPGDH 429

Query: 462 LVV 464
           ++V
Sbjct: 430 ILV 432


>gi|237727749|ref|ZP_04558230.1| folylpolyglutamate synthase [Bacteroides sp. D4]
 gi|229434605|gb|EEO44682.1| folylpolyglutamate synthase [Bacteroides dorei 5_1_36/D4]
          Length = 428

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/378 (11%), Positives = 94/378 (24%), Gaps = 24/378 (6%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +       + + GT+GK S +  +  I Q +G  +        I    +      P    
Sbjct: 41  HPHRQFRTIHIAGTNGKGSCSHTLAAILQSAGYKTGLYTSPHLIDFRERIRVNGIPVSKE 100

Query: 170 --LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +     +       H S    +  +  H     ++            ID     +   
Sbjct: 101 YVIDFVEKHRVFFEPLHPSFFELTTAMAFHYFSQSQIDVAIIEVGLGGRIDCTNIIRPDL 160

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                +  + +      +       +  + ++                    K+V A   
Sbjct: 161 CVITNISFDHIQFLGNTLAKIATEKAGIIKEKTPVVIGETTPETKPIFTTRAKEVNAPIY 220

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVY-----------------NALVAAGLCIAIGIDSA 330
             +    +     +       +   Y                   L A  L    G    
Sbjct: 221 FAEEEQLLHSSSINEKGKRIYQTTDYLNLEGELEGLCQLKNTNTLLSAIRLLKQAGYQLT 280

Query: 331 LVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                    ++  + G             +  D  H    +  I++ ++     R+ +V 
Sbjct: 281 ESNIRKGFSQVCELTGLMGRWQKLESEPTLICDTGHNVGGISYIIEQLKHQKYERLHIVI 340

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           G   D+D      M       A          R+   +++++  +          +   A
Sbjct: 341 GMVNDKDISGVLSM---LPKNATYYFTKASVKRALSEKELQSLAMQSRLHGDAYPDVETA 397

Query: 449 IRTAIEMLNKQDVLVVAG 466
           +  A E  NK D + V G
Sbjct: 398 VAAAKEKANKNDFIFVGG 415


>gi|326568848|gb|EGE18918.1| bifunctional protein FolC [Moraxella catarrhalis BC8]
 gi|326575047|gb|EGE24976.1| bifunctional protein FolC [Moraxella catarrhalis O35E]
          Length = 442

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 107/389 (27%), Gaps = 56/389 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---------- 167
             V GT+GK S    +  IC+  GL +        +S   +                   
Sbjct: 53  FTVAGTNGKGSTTKTIAAICEACGLKTALYQSPHLVSFTERICINGNEISESDLVAAFEA 112

Query: 168 ---------IYLAKALSYLSSQGVTHVSVEASSHGLDQH------RLDGIKLIAGSFTNL 212
                    + L+       +        +     L+         ++ I       TN+
Sbjct: 113 VENARVAKNVTLSFFEMTTLAAFWHFNQKKCDVWVLEIGLGGRLDVVNIINPDVAVITNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G DH+D+          +                         ++               
Sbjct: 173 GIDHVDWLGDDIERIGQEKAGIIR--------------ENIPVILGARQLPNSVHELANR 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K +H   V   + +Q  T            P P           A +  +        
Sbjct: 219 LTKHVHQLGVNYDYMEQDETWIFSNAALTIQLPKPKLSLQNAVNAVAAVLESGIKIHLDS 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--------RI 384
           +        + GRF+    N        D AH S+ +   L                 ++
Sbjct: 279 VIDGLHQVQLAGRFDQRIIN--DRHWIFDVAHNSHGIRFFLAQWADEWHKHKKIYPDAKL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD-----LADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            V+F   GD+D      + K ALD     + D ++   ++PR+ D + +   +   I   
Sbjct: 337 KVIFSMLGDKDVDAVLEVIKAALDDKKISIHDWSVAAINHPRAMDLQTLLGHVHTHIQPS 396

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 +  +A ++     + QD++VV G
Sbjct: 397 NLKIYQDLAQAAQSVSTDASTQDLIVVFG 425


>gi|157803837|ref|YP_001492386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
 gi|157785100|gb|ABV73601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           canadensis str. McKiel]
          Length = 455

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 89/274 (32%), Gaps = 25/274 (9%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                  N +AV GT+GKS+  + +  I   +GL     G     +  A++++       
Sbjct: 98  FEKSRNLNFIAVIGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALKAKNSKDG----- 152

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  LD   +           N+  DH+D H+    Y  
Sbjct: 153 ----------------YVIELSSFQLDL--VKTFTAKIAVLLNITPDHLDRHKDMNGYIK 194

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK ++F  +       I   +D   K  MK       +++             V      
Sbjct: 195 AKSKIFNRMDKNSYAVINIDNDYCRKIFMKLQQEQRIKLIPFSVTKILEKGISVVNNIIN 254

Query: 289 QQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHLEKLHVVPGRFE 347
                +   K   F   L G     N   +  +   +G++ +  ++E +     +P R +
Sbjct: 255 YSFFGNSNFK-LPFNKNLQGIHNCENIAASYAVAKIMGLEESTKIIEAISSFQSLPHRMQ 313

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
           ++G+ +         A  + S    +K +  I  
Sbjct: 314 YIGSINNISFYNDSKATNAISALQSIKALDNIYW 347


>gi|239994148|ref|ZP_04714672.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Alteromonas macleodii ATCC 27126]
          Length = 443

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 49/398 (12%), Positives = 112/398 (28%), Gaps = 41/398 (10%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
            V      ++L            ++ V GT+GK +    ++Q     G S          
Sbjct: 49  RVKEVANAMAL------SLSQSLVITVAGTNGKGTTCRLLEQAMLSQGKSVAVYSSPHLT 102

Query: 154 SSFAQDN----------------------RLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
               +                        + T   PI L        +      S     
Sbjct: 103 DYRERVRYNGELPPADEFVNAFEFVESARKDTGGEPITLTYFEFGTLAAMKMMQSWAVDV 162

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L+     G+     +   +  D          + +      E++  +++  +    +A
Sbjct: 163 VILE----VGLGGRLDATNIVDPDLAVITTIDLDHQDWLGNTREKIAREKAGIMRKNGNA 218

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
              E+   +                    +     +  + +   +   +    P P    
Sbjct: 219 VVGELFPPSSLYDVANELQANVRWATQDFETVVASDYSEWSWRGKSNSYT-SLPYPKIPL 277

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
              +   A L +   +    V+  + +   +PGR +   T S    + VD AH   +   
Sbjct: 278 QNASTALAALELLDLLPEEHVVRDIIENTTMPGRQQ---TISESPLVVVDVAHNPQATTA 334

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           +   +      ++ VV G    +D+     +  +A   A   + +   PR    E +   
Sbjct: 335 MQDWLNRYDVSQMRVVVGML--KDKSIAETLAPLATLNAKWYVASTSGPRGCKAEVLENA 392

Query: 432 IIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +++    I       +   A + A+      ++++V G
Sbjct: 393 LVNAGTTIENIDTFQDVTSAYQRALADYQTGELILVFG 430


>gi|302529277|ref|ZP_07281619.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302438172|gb|EFL09988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 481

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 99/281 (35%), Gaps = 19/281 (6%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L   +      TN+  DH+D ++       A    F E        ++  DD +S+ V +
Sbjct: 183 LVAYQPDVVVITNIDADHLDQYEDVDTLARAFA-GFAERAGTTGFVVMPEDDPHSRWVTR 241

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVC--AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
                G RV + G         ++      + +      +  +     P+PG     NA 
Sbjct: 242 YLRAKGIRVFTFGEGSPADLSIRLESELPGSVRFTARFRDDDEAAVEVPVPGSHMARNAG 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    + +G   +  +  L +   V  RFE  G   RG R+Y DYA    S+   L  +
Sbjct: 302 AALLTAVKLGASRSGAVLGLAQYPGVGRRFELKG-EPRGIRVYDDYACHHTSIRASLTAL 360

Query: 377 RTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD--DNPRSEDPEKIRAE 431
           R    G R+I V      R         +IA  LA  D  +V    D  RS D       
Sbjct: 361 RRTAMGGRLIAVAEPC--RQYRLAQFQAEIADALAVADRVVVLPVFDADRSFDHCAPAEA 418

Query: 432 IIH-----GIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAG 466
           +       G   ++ +    +A   A+ +     D++V  G
Sbjct: 419 LTSLVNLPGHDKYLART--PDAAARAVGQFARPGDLVVTLG 457


>gi|163787488|ref|ZP_02181935.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877376|gb|EDP71433.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 443

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 15/284 (5%)

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              +  +E SS  LD   +   K      TN+  DH+D +  +   + A      E   +
Sbjct: 148 DYKNYVLEISSFQLDD--IIDFKPKIAVLTNITPDHLDRYDYKFENYIASKFRVVENQTE 205

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
           +   I  +DD   +E ++       ++     +                     +     
Sbjct: 206 DDYFIYDSDDQVIEEWLQNNSIQSKKLPFSLTKVVEQGAYIDNNNIIITIDNNQIIMPTE 265

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
           +      G+  V NA+ A+ +   + I    + E LE    V  R E V   ++   I  
Sbjct: 266 NITLE--GKHNVKNAMAASTVAHLLKIRKQTIRESLENFQGVEHRLEHVLKINKVQYIND 323

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNP 420
             A     +      + ++ +  + +V G   D+    + +   +   +  I  +  DN 
Sbjct: 324 SKATN---VNATYFALDSMDAPTVWIVGGV--DKGNDYKELFPFVNEKVKAIICLGVDN- 377

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 K+     + +   IE     EA++ A ++ N  D +++
Sbjct: 378 -----AKLFEAFGNMVDVIIETEYMSEAVKIAYKVANTGDNVLL 416


>gi|326566948|gb|EGE17086.1| bifunctional protein FolC [Moraxella catarrhalis 12P80B1]
          Length = 442

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 107/389 (27%), Gaps = 56/389 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---------- 167
             V GT+GK S    +  IC+  GL +        +S   +                   
Sbjct: 53  FTVAGTNGKGSTTKTIAAICEACGLKTALYQSPHLVSFTERICINGNEISESDLVAAFEA 112

Query: 168 ---------IYLAKALSYLSSQGVTHVSVEASSHGLDQH------RLDGIKLIAGSFTNL 212
                    + L+       +        +     L+         ++ I       TN+
Sbjct: 113 VENARVAKNVTLSFFEMTTLAAFWHFNQKKCDVWVLEIGLGGRLDVVNIINPDVAVITNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G DH+D+          +                         ++               
Sbjct: 173 GIDHVDWLGDDIECIGQEKAGIIR--------------ENIPVILGARQLPNSVHELANR 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K +H   V   + +Q  T            P P           A +  +        
Sbjct: 219 LTKHVHQLGVNYDYMEQDETWIFSNAALTIQLPKPKLSLQNAVNAVAAVLESGIKIHLDS 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--------RI 384
           +        + GRF+    N        D AH S+ +   L                 ++
Sbjct: 279 VIDGLHQVQLAGRFDQRIIN--DRHWIFDVAHNSHGISFFLAQWADEWHKHKKIYPDAKL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD-----LADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            V+F   GD+D      + K ALD     + D ++   ++PR+ D + +   +   I   
Sbjct: 337 KVIFSMLGDKDVDAVLEVIKAALDDKKISIHDWSVAAINHPRAMDLQTLLGHVHTHIQPS 396

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 +  +A ++     + QD++VV G
Sbjct: 397 NLKIYQDLAQAAQSVSTDASTQDLIVVFG 425


>gi|325923953|ref|ZP_08185543.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
 gi|325545579|gb|EGD16843.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas gardneri ATCC
           19865]
          Length = 477

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 121/368 (32%), Gaps = 42/368 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    +   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDSDHLENYGNDFSRIQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V     + + T+ +         
Sbjct: 224 LLCIDDPEVAALASKTPRH--VMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LE    +  RF    E   +     R+ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVAPETIARALENFAGIGRRFNDLGEVTTSTGARVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDP 425
             P  E P
Sbjct: 401 VYPAGEAP 408


>gi|317492658|ref|ZP_07951085.1| FolC protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919408|gb|EFV40740.1| FolC protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 428

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 21/199 (10%)

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           + +      +           D  +      E  + NA  A        +          
Sbjct: 221 YRRGADWNFSVTDRDWQWHDADKTWSHLPLPEVPLPNAATALAALRHCSLSIDDAAIRQG 280

Query: 338 -KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-------IVVFG 389
               ++PGRF+ V        + +D AH  ++   +   ++ +   R          V G
Sbjct: 281 LDSALLPGRFQIVREQPL---LILDVAHNPHAAGYLAGRLQQLLEQRPSTQPRHLRAVVG 337

Query: 390 CGGDRDQGKRPIMGK--IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              D+D        K  I            + PR    E++       +       +   
Sbjct: 338 MLEDKDIAGTLECLKPLIHDWYCAPL----EGPRGAPVERLAE----HLDEPNVFADVES 389

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           A R A++    QD+++V G
Sbjct: 390 AWRKAMQDAAPQDIVIVCG 408


>gi|309777939|ref|ZP_07672882.1| FolC protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914337|gb|EFP60134.1| FolC protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 412

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 111/381 (29%), Gaps = 32/381 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              A+    ++    + + GT+GK S  + ++ I Q +G           I+   +    
Sbjct: 28  QYMAALGNPQNQLKSIHIAGTNGKGSTTNDIRSILQTAGYKVGSFTSPYMITHLDRIRIN 87

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF------------T 210
                      ++           +      +    +  ++                  T
Sbjct: 88  DQDIREDAFVDIANRYYDSWMEWDLSMFEIDMCIAVIYYLEEAVDFCVFETGLGGRLDAT 147

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+    +             +    E +  E   I+           K       +  + 
Sbjct: 148 NILIPLVSVITNIGMDHMEFLGDTLEKIAGEKAGIVKEGVDLITAEEKACCLKVFQKHTA 207

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-----IAI 325
                 I L+++  I   Q       G   D        +Q  NA +A  +C        
Sbjct: 208 AAHAACIQLQRISDIQETQDGLTFTYGDRKDISLAGKARYQCRNAALAIEVCTYLQEHRY 267

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
                  L       V  GRFE   T SR   I +D AH ++ +  +  N++ +   +  
Sbjct: 268 IQLEEAQLRAGLSAAVWIGRFE---TISRNPLIILDGAHNADGIHALCDNLKRMKEVQ-- 322

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           ++F    D++        +   D  DI +V   N R+ D       ++ G        + 
Sbjct: 323 LLFSVLKDKNFEDMLCELETVCD--DILVVPFQNERALDVS-----LLRGRDHVHIMESY 375

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             AI  A++       LV+ G
Sbjct: 376 ERAIAYALQNDRP---LVITG 393


>gi|257440432|ref|ZP_05616187.1| tetrahydrofolate synthase [Faecalibacterium prausnitzii A2-165]
 gi|257197054|gb|EEU95338.1| tetrahydrofolate synthase [Faecalibacterium prausnitzii A2-165]
          Length = 423

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 9/149 (6%)

Query: 314 NALVAAGLCIAIGID-SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            A+ A  +  + G +     +    +    PGRFE +  +       +D +H ++ +   
Sbjct: 258 TAITALRVLRSRGWNIPDSAIRAGLEQVRWPGRFELLRHSPA---FLLDGSHNAHGMRAT 314

Query: 373 LKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRA 430
           ++++R      + + +     D+D      M  + L LA     V    PR+   E +  
Sbjct: 315 VQSLRDRFPGQKFVFLLSIMADKDVD---EMLALLLPLAGQFVTVAAHTPRAMPAETLAE 371

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           +I                +  A+ +    
Sbjct: 372 QIRARGGRAEPAPTIEAGVARAVALGGTG 400


>gi|218133790|ref|ZP_03462594.1| hypothetical protein BACPEC_01679 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991165|gb|EEC57171.1| hypothetical protein BACPEC_01679 [Bacteroides pectinophilus ATCC
           43243]
          Length = 446

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 119/408 (29%), Gaps = 50/408 (12%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           +L A     +    ++ + GT+GK SV  ++  + +  GL++        I    +    
Sbjct: 27  ALLARLGNPERELKVIHIAGTNGKGSVCMYIAGMLRSLGLNTGVFTSPHLIRENERIRFN 86

Query: 163 TTPSPIYLAKALSYLSSQ-----------GVTHVSVEASSHGLDQ--------------- 196
                            +            +++         L                 
Sbjct: 87  DELISDEDFTDCFEKVHRAELELLKDGFGQISYFDFFVGIAMLYYAMKKPDVVILETGLG 146

Query: 197 HRLDGIK----LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            RLD        +    T++  DH+           A+      ++   +P +  A   Y
Sbjct: 147 GRLDSTNAVESPVMTVITSISLDHVAILGDTVEKIAAEK---AGIIKHGAPVVYVAGQEY 203

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
           S  + ++A   G +   V      IH        +    +I  +   F    P   +   
Sbjct: 204 SHVIEEKAEAMGIKAAGVEKSQCEIHEIG-SKHIDFSLDSIYYKDNVFRLATPAVYQVMN 262

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV--------GTNSRGGRIYVDYAH 364
               + A   +        +            R                     Y+D AH
Sbjct: 263 AALAMTAVQMLVESRCFDRIAYDSMDRQNYIDRIRRGLESVTWEGRMEQVCEGFYIDGAH 322

Query: 365 TSNSLEM---ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA-LDLADIAIVTD-DN 419
             + +         ++  T G  +++F    D+D     ++ +I   ++ D  ++T  + 
Sbjct: 323 NPDGIAALLDTAAAMKKNTRGHYVLMFSAVNDKDYS--SMIKEICDSNIFDEYVITQIEG 380

Query: 420 PRSEDPEKIRAEIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R  D  KI         G + E+ +  +A++ ++E       ++ AG
Sbjct: 381 ARCLDVSKIADTFRRYTDGHVNEEPDVGQAVKKSVECFGGNATVICAG 428


>gi|148273042|ref|YP_001222603.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830972|emb|CAN01917.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 514

 Score = 45.3 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 104/314 (33%), Gaps = 32/314 (10%)

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
           I L          G   + VE SSH L   R   ++  + +F NL  DH+++H ++ AY 
Sbjct: 172 IGLPVLDVVRHPDGFDVLVVELSSHQLHYMR--EVRPYSSAFLNLADDHLEWHGSRAAYA 229

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------L 279
            AK R++ +           AD A    + +     G R +  G               L
Sbjct: 230 AAKGRVYADTRVAC--VYNRADRATEDALREADVQDGARAIGFGLDAPGPSDLGIVDGIL 287

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                +  +    + +   D      L     V N L AA L  + G++  +V + L + 
Sbjct: 288 CDRAFLEERFTSALELTTLDELRAVGLAAPHIVQNILAAAALARSYGVEPGVVRQALLRF 347

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            +   R E +G       +    A   ++    L    +      +V    G  +     
Sbjct: 348 ELDSHRIERIGERDGVAFVDDSKATNPHAASASLAAFPS------VVWVVGGLLKGVELD 401

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE----KGN----RIEAIRT 451
            ++   A  L    ++        +  ++ A      P        + +       A+R 
Sbjct: 402 DLIRAHAARLRAAVVI------GVERVEVLAAFARHAPDVTVLEVAESDTEQVMRSAVRL 455

Query: 452 AIEMLNKQDVLVVA 465
           A  +  + D +++A
Sbjct: 456 AAGVAREGDTVLLA 469


>gi|325523967|gb|EGD02169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. TJI49]
          Length = 461

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 106/356 (29%), Gaps = 24/356 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 103 KWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +       NL  DH D      A       L
Sbjct: 163 DTAFFDKRSKFV---------------HYRPRTAVLNNLEFDHADIFPDLAAIETQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +            DA  + + +   +   R    G          V         ++
Sbjct: 208 VRTVPGIGRIVTNGRADALDRVLARGCWSEVERFGVDGGWQALPAEDGVPVDECFAVYSL 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +  +     GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 268 GQRVGEVAWQVQ--GEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLAD 411
            G  +Y D+AH   ++E  +  +R     +   +      R    K  +M  ++   LAD
Sbjct: 325 NGVTVYDDFAHHPTAIETTIAGLRARIGRQNTRILAVLEPRSNTMKLGVMKSQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +     P   D     +   +          G+    ++  +E     D ++V
Sbjct: 385 ADLVFGYGAPSGRDALGWNLGEALAPLGDKAQAFGDLHLLVKAVVEAARPGDQVLV 440


>gi|307275476|ref|ZP_07556618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2134]
 gi|306507864|gb|EFM76992.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2134]
 gi|315171930|gb|EFU15947.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1342]
          Length = 456

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 90/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
             +D       +       +  +              A     ++  + E         +
Sbjct: 218 -VEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|295092955|emb|CBK82046.1| folylpolyglutamate synthase/dihydrofolate synthase [Coprococcus sp.
           ART55/1]
          Length = 432

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 106/375 (28%), Gaps = 25/375 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           SL       +     + V GT+GK S    + Q+    G           +S   +    
Sbjct: 28  SLLCRLGNPEKAVPAIHVAGTNGKGSTCRALAQMLAARGYRVGLFISPHLVSINERIQIN 87

Query: 163 TTP-------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQ------------HRLDGIK 203
            T        S     K            +   A+ +   Q             RLD   
Sbjct: 88  GTNISDDDFVSAFETVKGQFMEHPSFFEVMFAMAAVYFRQQKCDFAVYETGMGGRLDATN 147

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA-HN 262
           ++    T +    +D+ +               ++    P I +  D  +  V++     
Sbjct: 148 VLTPELTIITSVGMDHMEYLGDTIEKIAYEKAGIIKPGVPVIYFRRDEAAARVIEDTAKE 207

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  ++ V      I+      I                    L     V  A+ A  + 
Sbjct: 208 RGADIIPVEKSDYIINHLGNKTIDFSLHNRYYSYCNLQIQKTSLYQVENVSLAVTAFRML 267

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITS 381
           +         +E   +  ++   +E          IYVD AH   ++   ++ + R    
Sbjct: 268 MERRNVPEQDIEKTVRNALLQFYWE-GRMEEIAPHIYVDGAHNVEAVNAYIETMNRLHGE 326

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE 441
              I+VF    D++      +    +    I + + D+ R  D  K  AEI         
Sbjct: 327 YDKILVFAAVKDKEYDSMIHLLAGNITFGRIIVTSVDSSRKADSAK-LAEIFSACTDTPV 385

Query: 442 KGNRIEAIRTAIEML 456
             +    I  A++M 
Sbjct: 386 MVSDE--IDDAMDMA 398


>gi|260582932|ref|ZP_05850716.1| folylpolyglutamate synthase [Haemophilus influenzae NT127]
 gi|260094032|gb|EEW77936.1| folylpolyglutamate synthase [Haemophilus influenzae NT127]
          Length = 437

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/390 (12%), Positives = 103/390 (26%), Gaps = 45/390 (11%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ V GT+GK +    ++ I    GL          +    +        P    
Sbjct: 45  HPAPYVITVGGTNGKGTTCRLLETILLNHGLRVGVYSSPHLLRYNERVRIQNQDLPDEAH 104

Query: 172 K----ALSYLSSQGVTHVSVEASSHGLDQ----------------HRLDGIKLIAGSFTN 211
                 +    ++ +T+      S  L                   RLD   ++      
Sbjct: 105 TASFAFIDENKTESLTYFEFSTLS-ALHLFKQAKLDVVILEVGLGGRLDATNIVDSHLAV 163

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +    ID+         A       +  +  P +I   +     + +             
Sbjct: 164 ITSIDIDHTDFLGDTREAIAFEKAGIFCENCPVVIGEPNVPQTMLDQAEKLHCQVARRDV 223

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                 + +     + K ++      +              Y     +   +        
Sbjct: 224 DWLFEQNAENWQWQNKKVRLENLPFCQIPLANAATALAAVQYLPFGISEQTL--RKSLQE 281

Query: 332 VLEHLEKLHVVPGRFEFVGTN-----SRGGRIYVDYAHTSNSLEM---ILKNIRTITSGR 383
           V        +   R E +             I VD  H  ++ +     L  ++    G+
Sbjct: 282 VELVGRFQAIKADRREKLADYLGVPVETLPTIIVDVGHNPHAAKYLSEKLTALKRSIEGK 341

Query: 384 IIVVFGCGGDRDQGKRPIMGKIALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPG 438
           +I V G   D+D            +     I     VT    R +  +++  ++    P 
Sbjct: 342 MIAVCGMLKDKDANG-------VFEHLTPIIDEWHCVTLSGYRGQSGDELAEKLKSHFPN 394

Query: 439 FIEKGNRI--EAIRTAIEMLNKQDVLVVAG 466
                +    + + TA++   K DV++V G
Sbjct: 395 IQATSDNSVMDGVCTALKSAVKNDVVLVFG 424


>gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
 gi|226722954|sp|B5FB37|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
          Length = 440

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 141/397 (35%), Gaps = 56/397 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV +   +L         +  I +V +         +         ++A+TG++GKS
Sbjct: 69  ADLIVTNPGIALASPQLKPAIDKGIQIVGDI-----ELFAWAVNAP---VIAITGSNGKS 120

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V     ++ + +G+ +   G                 + + L +  + L         +
Sbjct: 121 TVTDLTGEMAKAAGVKTAVGGNIG-------------FAALDLLEQDAEL-------YVL 160

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +KL A +F NL  DH+D +Q    Y  AK+R+F+            
Sbjct: 161 ELSSFQLET--TSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHAEVCIVNRDDK 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                 ++ +K           +   G     K   ++    ++ +  +           
Sbjct: 219 QTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDAMSLLAANELGLVGKHNI-------- 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 N+LVA  L  A+GI+    L+ L   + +  R + V  N+    +    A    
Sbjct: 271 -----ANSLVAIALLDAVGINLDATLDTLRTYNGLTHRCQVVADNNGIRWVNDSKATNVA 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S    L  ++    G++ ++ G  G     K     +++  L D+ +        ED   
Sbjct: 326 STLAALSGLQL--EGKLHLLVGGVG-----KGADFSELSPALHDLNL--MMYCFGEDG-- 374

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +   P  +      EA+ T    LNK D++++
Sbjct: 375 --DQFVSLDPRSLLCETMDEAVATLYPTLNKGDMVML 409


>gi|260891632|ref|ZP_05902895.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
 gi|260858642|gb|EEX73142.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
          Length = 459

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 113/354 (31%), Gaps = 51/354 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A +   K    I++ TGT+GK++ ++ + ++   +G  +   G      +    +   
Sbjct: 82  DLAYKYVDK-NIKIISFTGTNGKTTTSTKMAELLNFAGFRAKLAGNAGFSFAKLVADE-- 138

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
                           + + ++ +E SS+ L+ +    I        NL  DH+  +++ 
Sbjct: 139 ----------------EELDYIVLELSSYQLENN--PQIHSNIAGIINLTPDHLTRYESV 180

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA----HNAGCRVLSVGYQGKFIHL 279
           + Y+  K  +F++    +  A+I  DD    E+ +R          +V         + +
Sbjct: 181 EDYYITKFAIFDKQTGDD-FALINLDDEVFAELYERREINEKMKAQKVYLSKETKGTVFV 239

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPG-------------EFQVYNALVAAGLCIAIG 326
            +      K       E ++F                        + N L        + 
Sbjct: 240 YENNIRIMKDLSKRIDEIQNFGEKIDEISEILLKTEELSLKGRHNLENMLFLISSAKILN 299

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + +  + E L+  + +  R E          I         S    + +         I+
Sbjct: 300 VKNEKLAEFLKSTNALEHRLENFFVKGNTAFINDSKGTNVESTLKAIDSF-----NNSII 354

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH-GIPGF 439
           +   G D+     P++ ++     D   +  DN      + +  ++   G   +
Sbjct: 355 MILGGDDKKIDNMPLIERVKEK-VDFVYLIGDN-----AQILIDDMEKIGYKNY 402


>gi|237746725|ref|ZP_04577205.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Oxalobacter formigenes HOxBLS]
 gi|229378076|gb|EEO28167.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Oxalobacter formigenes HOxBLS]
          Length = 438

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 108/384 (28%), Gaps = 40/384 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
           +    ++ V GT+GK S  + +Q I + +G  +             +             
Sbjct: 45  RFDCPVVTVGGTNGKGSTCAMLQAIWKEAGYRTGLYTSPHIHRFNERMKIDGKMVDDETL 104

Query: 164 --TPSPIY-------LAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAGSFTN 211
                 I        L                 +     L+     RLD + LI    + 
Sbjct: 105 VACFEEIEAARGDIALTFFEFTTLVALKLFSDAKLDVIVLEVGLGGRLDAVNLIDADVSV 164

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG 271
           +    ID+ +               +      A     D     +           +   
Sbjct: 165 VTNVAIDHVEYLGHTREEIGFEKAGIYRGGRIAFYGDIDPPDSLIHHARAIGAELKVLGK 224

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
                ++  +   I       +         L+           L       A       
Sbjct: 225 DYSFSMNADRWDYIGRSTVSGLVHPS-----LYGDNQIHNAATVLAVVEALQARLPVGRD 279

Query: 332 VLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGC 390
            LE       +PGRF+ +        I +D AH  ++  ++ KN++ +   G    VFG 
Sbjct: 280 ALERGLARTELPGRFQILQNEPS---IILDVAHNPHAAAVLAKNLKEMGAFGTTYAVFGA 336

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAE-IIHGIPG------FIEK 442
             D+D      + K   D  D   +TD   PR+   E ++ + I  G+            
Sbjct: 337 MADKDIDGVIELMK---DCVDRWYLTDLPLPRAASAEALKQKLIAAGVTRGKTNQCISVY 393

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +  +A+ +A     K D +V  G
Sbjct: 394 HHAADALASAKNNARKNDRIVAFG 417


>gi|261418347|ref|YP_003252029.1| FolC bifunctional protein [Geobacillus sp. Y412MC61]
 gi|319767694|ref|YP_004133195.1| FolC bifunctional protein [Geobacillus sp. Y412MC52]
 gi|261374804|gb|ACX77547.1| FolC bifunctional protein [Geobacillus sp. Y412MC61]
 gi|317112560|gb|ADU95052.1| FolC bifunctional protein [Geobacillus sp. Y412MC52]
          Length = 431

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 84/273 (30%), Gaps = 14/273 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I       +        V +E    G      + I  +    TN+  DH++    
Sbjct: 120 TEFEVITAMMLYYFGKQNIQDIVLIEVG-LGGRLDSTNIIYPLLSVITNVSYDHMNILGD 178

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 A+     +       A+   +      + K A     +   +G        +  
Sbjct: 179 TLDQIAAEKAGIIKSGIPLVTAV--NEPEAWDVIAKTAAERKAKTYRLGVDFTVSDRQAT 236

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKL 339
                   VT   E +D     P   + +     V A   + +G         +      
Sbjct: 237 VEGEQFSLVTPFAEYRDLRIQMPGAHQVENAAVAVMAAELLRLGYSFLIDPEHIADGLAT 296

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGK 398
              PGRFE V  +     I +D AH    +  +++ +R     + + V F    D+   +
Sbjct: 297 AAWPGRFERVSDSPL---IILDGAHNEAGIRSLVETVRAHYPDKHVHVLFAALTDKPLER 353

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
              M ++  +LAD    T  D PR+   E++  
Sbjct: 354 ---MIQLLDELADTITFTTFDFPRAAAAEQLAD 383


>gi|206562851|ref|YP_002233614.1| putative bifunctional folylpolyglutamate synthase/dihydrofolate
           synthase [Burkholderia cenocepacia J2315]
 gi|198038891|emb|CAR54853.1| putative folC bifunctional protein [includes: folylpolyglutamate
           synthase; dihydrofolate synthase] [Burkholderia
           cenocepacia J2315]
          Length = 436

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     +
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHASAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLQ 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+   E++ A +   G+            +  EA R A
Sbjct: 351 HLKGEI-----DHWCVTDLPLPRAASAEQLEAALRKAGVEEGPDSSVTRYASPAEAFRDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|152967142|ref|YP_001362926.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
 gi|189028996|sp|A6WCX3|MURC_KINRD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151361659|gb|ABS04662.1| UDP-N-acetylmuramate--alanine ligase [Kineococcus radiotolerans
           SRS30216]
          Length = 471

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 99/270 (36%), Gaps = 11/270 (4%)

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+  DH+D++ T    F A    F + L      +  ADD  S  +   A   G R
Sbjct: 189 DVVTNVEPDHLDHYGTA-EAFAAAFEEFVDRLQPGGLLVACADDPGSAALAGHARGRGVR 247

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           V + G         +           +   G   +    +PGE  V NA  A    + +G
Sbjct: 248 VRTYGASATADVRLRDLQPGAAASAVLVDGGVPRELRLAVPGEHNVLNAAAAYCAAVELG 307

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D   VLE L +      RFE  G  + G R+  DYAH    +E +L+  R +  G  +V
Sbjct: 308 ADPVAVLEGLARFGGARRRFELKG-EAAGVRVVDDYAHHPTEVEALLRAARPVAGGGRVV 366

Query: 387 VFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPG 438
           V        R +      G+ AL LAD  +V D     EDP        +   +      
Sbjct: 367 VVFQPHLVSRTRAFAAEFGR-ALALADEVVVLDVYVAREDPDPEVTGALVADAVPLPAGR 425

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                +R  A  T    +   D+L+  G G
Sbjct: 426 VRFLPDRSAAAGTLAATVRAGDLLLTVGAG 455


>gi|78062968|ref|YP_372876.1| folylpolyglutamate synthetase [Burkholderia sp. 383]
 gi|77970853|gb|ABB12232.1| Folylpolyglutamate synthetase [Burkholderia sp. 383]
          Length = 436

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     +
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHASAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLQ 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+   E++ A +   G+            +  EA R A
Sbjct: 351 HLKGEI-----DHWCVTDLPLPRAASAEQLEAALRKAGVEEGPDSSVTRYASPAEAFRDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|21241550|ref|NP_641132.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|23821877|sp|Q8PPA7|MURC_XANAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21106901|gb|AAM35668.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 477

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 135/431 (31%), Gaps = 52/431 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V       + T+ +         
Sbjct: 224 LLCIDDPEVAALAGKTPRH--VMSYGMSENADVRAEDVVQDGPCMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LE    +  RF    E   +     R+ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSTGARVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVAGKGHE 470
             P  E P                  +    +     +           D+L++ G G  
Sbjct: 401 VYPAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDI 460

Query: 471 TV---HIVTNG 478
                HI+ NG
Sbjct: 461 GYVAQHIINNG 471


>gi|300112944|ref|YP_003759519.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538881|gb|ADJ27198.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
          Length = 477

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 84/446 (18%), Positives = 142/446 (31%), Gaps = 86/446 (19%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH    Q I  G + +VVSSA    +          I VV    + L+      YG    
Sbjct: 68  GHD--SQHIE-GCDVVVVSSAIDENNPEVRAARGRLIPVVPRA-EMLAELMRFRYG---- 119

Query: 116 NILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  I  + +   +F IG    ++S   ++RL     +      
Sbjct: 120 --IAVAGTHGKTTTTSLIAGILGEANLDPTFVIG--GQVNSIGANSRLGKGEYLVAEADE 175

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       ++ +    TN+  DH+D +        A    F
Sbjct: 176 SDASFLL--------------------LQPLLAVITNVDADHMDAYGGDFIALKAAFLEF 215

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++           +       +   K      + QV   
Sbjct: 216 LHHLPFYGLAVVCLDDPVLRELLPDIGRPVLTYGTCKEADYQLQALKQIRARTQFQVARP 275

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +      +  LPG     NAL A  +   +G+  + +   L+    +  RF+  G  + 
Sbjct: 276 GKDNWLTVVLNLPGAHNALNALAAIAVAHELGVADSAIQRFLKGFSGIGRRFQCYGEIAT 335

Query: 355 GGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
                    DY H    L   L+ IR     R +VV        +  R +       L+ 
Sbjct: 336 PAGKVLLVDDYGHHPRELAATLEAIRVGWPERRLVVIFQPHRYTRT-RDLFEAFIQVLSQ 394

Query: 411 -DIAIVTDDNPRSEDP---------------------------EKIRAEIIHGIPGFIEK 442
            D+  + +  P  E P                           E I  E++         
Sbjct: 395 VDVLFLLEVYPAGEVPIGGADSRALWQAIQARGQVRPILVEDKEII-EEML--------- 444

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
                     +++L + D+L+  G G
Sbjct: 445 ----------LDLLREGDLLLTVGAG 460


>gi|227892845|ref|ZP_04010650.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ultunensis
           DSM 16047]
 gi|227865347|gb|EEJ72768.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus ultunensis
           DSM 16047]
          Length = 437

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSA----ADQTKKALFVWGDDKRLQSLK-- 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +             F   +   +    +   ++       F   L G+  + N+     
Sbjct: 220 TDIPKYTYGFKDTDDFQATQVEKSTTGSKFHVLAHGKDLGQFEIHLFGDHSILNSTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + + L        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIRDGLLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PNKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAYVTPIYASAREKNGDISSDDLVKNIP 397

Query: 438 GFIEKG 443
                 
Sbjct: 398 SSEVID 403


>gi|123969098|ref|YP_001009956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. AS9601]
 gi|123199208|gb|ABM70849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 476

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 94/308 (30%), Gaps = 36/308 (11%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS +      +     +    ++                      N + +TGT+GK++
Sbjct: 81  VVVSPSIPYDHVTIVELKKKGIRVI---------GEINVAWEILKDTNWIGITGTNGKTT 131

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  I   +GL +   G   T                 L K       + +  V  E
Sbjct: 132 VTHLLSHILCDTGLYAPFAGNIGTP----------------LCKYAYSKKHEKIDWVVAE 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS+ ++      +K   G +T    DH++ H+T + YFN   +   E            
Sbjct: 176 LSSYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFN-IKKSLLEKSDFRIYNYDDK 232

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +       + R       +    +      +     I  + +    +E      +  L  
Sbjct: 233 NLRNYYSSLSRGVWITTSLDKSNFIHCDYWIDDQAYIVERGKKLFKLEHFSLKGMHNL-- 290

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L+       +G+    + + L     +P R E +  N+    I    A   +S
Sbjct: 291 ----QNLLLVIAAARKVGLSGKKIKDSLSNYKQLPHRMETIYKNNGLEIINDSKATNFDS 346

Query: 369 LEMILKNI 376
               + +I
Sbjct: 347 SIAGISSI 354


>gi|113971482|ref|YP_735275.1| UDP-N-acetylmuramate [Shewanella sp. MR-4]
 gi|113886166|gb|ABI40218.1| UDP-N-acetylmuramate [Shewanella sp. MR-4]
          Length = 465

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 117/355 (32%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A    + 
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQK-QF 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P +   I  AD    K+ ++    +      +    K  H K +    ++ +V
Sbjct: 208 HHLIRTVPGQGKVIWPADSHAVKQTIEMGCWSEQETFHIAEVTKGWHAKALSDDCHEFEV 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E +     + L G+  + NAL+A      +G+  +  +  L +      R E +G 
Sbjct: 268 FFDGESQ-GVLEWALIGQHNIENALMAIAAARHVGVKPSAAIAALTRFVPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   +K IR  +   +I +V     +  + G        ++  
Sbjct: 326 TVHGVSVYDDFAHHPTAIATTIKGIRAKVGQSKITIVLEPRSNTMKSGVHKDTLAHSMLQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + ++     +  +    +  +    +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVSASAKAGDTIVV 437


>gi|217076584|ref|YP_002334300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           africanus TCF52B]
 gi|226722950|sp|B7IFU5|MURD_THEAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|217036437|gb|ACJ74959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           africanus TCF52B]
          Length = 423

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 107/349 (30%), Gaps = 67/349 (19%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +AVTG+ GKS+  S +Q +  +    +   G      +   ++ L               
Sbjct: 108 IAVTGSVGKSTTVSMIQHVLNKYK-RTLLAGNIGIPIAKLLNDDL--------------- 151

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                 ++ +E SS  L     D  K    S  N+  +H+++H     Y N+K ++    
Sbjct: 152 ---RADYLVLEVSSFQLFWS--DKFKPNISSILNIYPNHLNWHPEMSHYINSKFKITLSQ 206

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
              +        +   + ++K       +                          +  + 
Sbjct: 207 DENDFFVY----NPNDEYIVKNLGKVKAK-------------------------KVPFKY 237

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
                  P    ++     VAA   I         ++ LE    +P R E+V   +    
Sbjct: 238 DFEIHQLPEHLRYKQTIENVAAAKTIVEVAGFEFNIDFLEDFEKLPHRMEYVTEINGVKF 297

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
                A        +++ +        +++ G G + D      + K ++    +     
Sbjct: 298 FNDSKATN---AAAVIRAVENFDGKLHLIMAGIGKNEDYTLLRKVLKNSVKTVALV---- 350

Query: 418 DNPRSEDPEKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                     I  ++   +    F+E  +  EA+     + N  DV+++
Sbjct: 351 --------GPIAKDVKPYLDGINFMECSSINEAVNQLFRIANPGDVIML 391


>gi|212694112|ref|ZP_03302240.1| hypothetical protein BACDOR_03638 [Bacteroides dorei DSM 17855]
 gi|237710250|ref|ZP_04540731.1| folylpolyglutamate synthase [Bacteroides sp. 9_1_42FAA]
 gi|265751058|ref|ZP_06087121.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663332|gb|EEB23906.1| hypothetical protein BACDOR_03638 [Bacteroides dorei DSM 17855]
 gi|229455712|gb|EEO61433.1| folylpolyglutamate synthase [Bacteroides sp. 9_1_42FAA]
 gi|263237954|gb|EEZ23404.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 428

 Score = 45.3 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 43/378 (11%), Positives = 94/378 (24%), Gaps = 24/378 (6%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +       + + GT+GK S +  +  I Q +G  +        I    +      P    
Sbjct: 41  HPHRQFRTIHIAGTNGKGSCSHTLAAILQSAGYKTGLYTSPHLIDFRERIRVNGIPVSKE 100

Query: 170 --LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +     +       H S    +  +  H     ++            ID     +   
Sbjct: 101 YVIDFVEKHRVFFEPLHPSFFELTTAMAFHYFAQSQIDVAIIEVGLGGRIDCTNIIRPDL 160

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                +  + +      +       +  + ++                    K+V A   
Sbjct: 161 CVITNISFDHIQFLGNTLAKIATEKAGIIKEKTPVVIGETTPETKPIFTTRAKEVNAPIY 220

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVY-----------------NALVAAGLCIAIGIDSA 330
             +    +     +       +   Y                   L A  L    G    
Sbjct: 221 FAEEEQLLHSSSINEKGKRIYQTTDYLNLEGELEGLCQLKNTNTLLSAIRLLKQAGYQLT 280

Query: 331 LVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
                    ++  + G             +  D  H    +  I++ ++     R+ +V 
Sbjct: 281 ESNIRKGFSQVCELTGLMGRWQKLESEPTLICDTGHNVGGISYIIEQLKHQKYERLHIVI 340

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           G   D+D      M       A          R+   +++++  +          +   A
Sbjct: 341 GMVNDKDISGVLSM---LPKNATYYFTKASVKRALSEKELQSLAMQSRLHGDAYPDVETA 397

Query: 449 IRTAIEMLNKQDVLVVAG 466
           +  A E  NK D + V G
Sbjct: 398 VAAAKEKANKNDFIFVGG 415


>gi|329997354|ref|ZP_08302737.1| protein FolC [Klebsiella sp. MS 92-3]
 gi|328539103|gb|EGF65139.1| protein FolC [Klebsiella sp. MS 92-3]
          Length = 422

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 110/373 (29%), Gaps = 34/373 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  V GT+GK +    ++ +   +G           +    +           L 
Sbjct: 46  KPAPFVFTVAGTNGKGTTCRTLETVLMAAGYKVGVYSSPHLVRYTERVRIQGA----ELP 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A    S   +     + S    +   L  + L   +  ++    +       A      
Sbjct: 102 EAAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDA 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--------C 283
            +                D  S    K       +   VG       +  V         
Sbjct: 162 DVAVVTSIALDHTDWLGPDRESIGREKAGIFRAGKPAIVGEPDMPHTIADVASEKGALLQ 221

Query: 284 AIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                 +  +  E   F          PLP       A   A L  +       +L    
Sbjct: 222 RRGVDWRYEVEGETWSFRDAAGALSRLPLPQVPLPNAATAVAALRASGIAVDDAILRAGI 281

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
           +  ++PGRF+ +    R   + +D AH  ++   +   ++T+  +GR++ V G   D+D 
Sbjct: 282 RDAMLPGRFQIISDAPR---VILDVAHNPHAAAYLAGRLKTLAKTGRVLAVIGMLHDKDI 338

Query: 397 GKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 G +A      D       + PR    E++   +  G        +  +A + A+
Sbjct: 339 A-----GTLANLAPEVDAWYCAPLEGPRGATAEQLVEHLRGG----TVYSSVAQAWQAAM 389

Query: 454 EMLNKQDVLVVAG 466
                +D ++V G
Sbjct: 390 ADAKVEDTVLVCG 402


>gi|332877758|ref|ZP_08445499.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332684338|gb|EGJ57194.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 449

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 6/166 (3%)

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   + +  +          +G  + D+ F  PG   + NAL A  + I  G    
Sbjct: 235 EDDSDYSFQHIRIVDGVYHFDFKYKGGIYKDYTFLKPGRHNLLNALAAVSMAIKAGFAPE 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L HL     V  RF       +      DYAH  + +  + + +  +       +   
Sbjct: 295 ALLPHLATFKGVKRRF-SYIIKEKNRVFIDDYAHHPSEINALYQAVSEMYPNTPKTIIFQ 353

Query: 391 GGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDP-EKIRAEII 433
                +  R  M   A  L+  D  I+ D  P  E P E I +E++
Sbjct: 354 PHLFSRT-RDFMDDFAKSLSQFDEVILLDIYPARELPIEGITSEVL 398


>gi|294338816|emb|CAZ87150.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) MurD [Thiomonas sp. 3As]
          Length = 514

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 112/376 (29%), Gaps = 31/376 (8%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A R    +   I+A+TGT+GK++V      + +R+G S    G  S         RL   
Sbjct: 111 ALREERGYAPKIVAITGTNGKTTVTRLTGLMLERAGWSVAVAGNISPSMLDVLQARLQAD 170

Query: 166 S--PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS-------FTNLGRDH 216
                ++ +  S+         +  A+   + Q  LD    +          F N     
Sbjct: 171 DLPAAWVLELSSFQLHGMEGFAADAATVLNITQDHLDWHGDMTAYAADKANIFGNQSAQG 230

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-------YSKEVMKRAHNAGCRVLS 269
           +           A  R   +L      A     D                      R   
Sbjct: 231 VMVLNCDDPQVLAMQRPGRKLRRFGLSAPQQPGDWGVVREGGIDWLARALPEEDSPRNRR 290

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                     + +       +  + ++         + G   V NAL A  L  A+G   
Sbjct: 291 GAAISPQGAGQGLGRPGALPEARLQMQRLMPAEALRIQGAHNVANALAALALGDAVGAPL 350

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           A +L  L +    P R + V        I         +    L  +         VV  
Sbjct: 351 APMLHALREYRGEPHRMQTVAVIDGVRWIDDSKGTNVGATVAALAGME------TPVVLI 404

Query: 390 CGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
            GGD + Q   P+  + A   A + I         D + I AE + G+   +   +  +A
Sbjct: 405 AGGDGKGQDFSPLRAQAARLRAAVLI-------GRDAQAIAAE-LQGLAPTVFTQSLEQA 456

Query: 449 IRTAIEMLNKQDVLVV 464
           ++ A  +    D  ++
Sbjct: 457 VQRAATLAKTGDAALL 472


>gi|115350565|ref|YP_772404.1| UDP-N-acetylmuramate [Burkholderia ambifaria AMMD]
 gi|172059596|ref|YP_001807248.1| UDP-N-acetylmuramate [Burkholderia ambifaria MC40-6]
 gi|115280553|gb|ABI86070.1| UDP-N-acetylmuramate [Burkholderia ambifaria AMMD]
 gi|171992113|gb|ACB63032.1| UDP-N-acetylmuramate [Burkholderia ambifaria MC40-6]
          Length = 461

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 107/356 (30%), Gaps = 24/356 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 103 KWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +       NL  DH D      A       L
Sbjct: 163 DTAFFDKRSKFV---------------HYRPRTAVLNNLEFDHADIFPDLAAIETQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +            DA  + + +   +   R    G          V         + 
Sbjct: 208 VRTVPGVGRLVTNGRSDALERVLARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSQ 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S    +  +     G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 268 SERVGEVAWQVQ--GDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SI 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLAD 411
            G  +Y D+AH   ++E  +  +R     +   +      R    K  +M  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +     P   D     +   +           +    +++ +E     D ++V
Sbjct: 385 ADLVFGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARPGDHVLV 440


>gi|42518884|ref|NP_964814.1| hypothetical protein LJ0959 [Lactobacillus johnsonii NCC 533]
 gi|41583170|gb|AAS08780.1| hypothetical protein LJ_0959 [Lactobacillus johnsonii NCC 533]
 gi|329667570|gb|AEB93518.1| hypothetical protein LJP_1196c [Lactobacillus johnsonii DPC 6026]
          Length = 421

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 113/387 (29%), Gaps = 30/387 (7%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            R+ L         +     + VTGT+GK S + ++  + Q++G  +             
Sbjct: 28  IRRILKQL---NNPQDSVKTIHVTGTNGKGSTSYYLSNLLQKAGQKTGLFVSPYIYEFNE 84

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLD-GIKLIAGSFTNLGRDH 216
           +                +      +  +  +     L     +  +     +  N     
Sbjct: 85  RIQLNGKNISNNDLIKTANEIEMAIEILKKDDPDFSLVTFEYEVALAFQFFAQENCDYAV 144

Query: 217 IDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKF 276
           I+     +      +     ++               K++ K           V      
Sbjct: 145 IEVGIGGEHDKTNVIIPEVSVITTIGLDHEKIIGPTLKDIAKEKSGIIKSNRPVVLGNVP 204

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI-----AIGIDSAL 331
             + ++     + + + S        +  +P   +  ++       +     A  I  A+
Sbjct: 205 QDVLEILLNKAQSENSKSFLLGRDFQIKIMPDVIKYQDSKNIYNFALRPLVEAYDIGIAV 264

Query: 332 VLEHLEKLHVVPGRFE----------FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
               L +L +   + E                    I VD AH   ++E +L  +R    
Sbjct: 265 QAIQLLQLDLDRKKIEEAINETRIPGRYDVIQTSPEIIVDGAHNLQAMENLLNLVRKKKK 324

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTD-DNPRSEDPEKIRAEIIHGIPGF 439
           G+I V+ G   D+D      +G +     D    +T  D PR+   E    E       F
Sbjct: 325 GQIYVLLGMMKDKD------LGPVTKLFKDEKVTLTRIDYPRAARLEDFPKEAQK---EF 375

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             K N  EA  +    L   D+L+V G
Sbjct: 376 EYKENFEEAYTSLKNKLQADDMLLVTG 402


>gi|85059594|ref|YP_455296.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Sodalis glossinidius str. 'morsitans']
 gi|84780114|dbj|BAE74891.1| folylpolyglutamate synthase [Sodalis glossinidius str. 'morsitans']
          Length = 421

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 101/364 (27%), Gaps = 19/364 (5%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++ V GT+GK +    ++ I   SG+          +    +              
Sbjct: 47  PATWVITVGGTNGKGTTCRLLEAILLASGMRVGVYSSPHLLRYTERVRIQGGELSEAAHS 106

Query: 173 ALSYLSSQGVTHVSVEASSHG----LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ---A 225
               +   G    S+     G    L   R   + ++       GR              
Sbjct: 107 EAMAVIEAGRGATSLSYFEFGTLAALQLFRQAALDVVILEVGLGGRLDATNIVDADVAVT 166

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
              A        L + S A   A      +            L     G  ++ +     
Sbjct: 167 TSIALDHTDWLGLDRASIAREKAGIFRRGKPAVVGEPNRPATLDAADCGAALYARDRDWW 226

Query: 286 HNKQQVTISVEGKDFDFLF-PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
                          +    PLP       A   A +           +    +   +PG
Sbjct: 227 WQDDGQHWRWWDNVHELTALPLPAIPLENAATALAAVARLPFAVPEAAVRQGLREASLPG 286

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGKRPIMG 403
           RF+ +G       I +D AH  ++   + + +  +   G++  V G   D+D    P   
Sbjct: 287 RFQCIGRAPL---IILDVAHNPHAAGYLARRLAALPRTGKVRAVVGMLADKDI---PGTL 340

Query: 404 KIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
                  D+      D PR+ +  ++ A +      F +  +   A   AI     +D +
Sbjct: 341 ACLRGQVDVWYCASLDGPRAANAAQLAAHLDSDAQRFEDVPS---AWHQAIADAAPEDCV 397

Query: 463 VVAG 466
           +V G
Sbjct: 398 LVFG 401


>gi|332142423|ref|YP_004428161.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552445|gb|AEA99163.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 481

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 93/282 (32%), Gaps = 16/282 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D +    +        F   LP    AI+  DDA  +E+  R 
Sbjct: 180 HLQPMVSVVTNIEADHMDTYGGDFSKVKDTFVDFLSNLPFYGQAIVCGDDANIQEIRPRI 239

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +        +         +          I  +         L G   V NAL A  
Sbjct: 240 GRSIITYGFESHNDYRAENISLSF-GKANFTVIRPDHDPLKITLNLTGNHNVLNALAAIA 298

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR 377
           +    G++   ++  L     +  RFE +GT +       +  DY H    +   +   R
Sbjct: 299 VATDEGVNDEAIIRALAGFGGIGRRFEQLGTFNTSKGEVCLVDDYGHHPTEVRATIAAAR 358

Query: 378 TITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIR 429
                + +V+        R +       ++     D  ++ D    SE P      + + 
Sbjct: 359 ANWPDKRLVMVYQPHRFTRTRDLYEDFVEVLSS-VDALLLLDVYAASEQPIEGADSKSLC 417

Query: 430 AEIIH-GIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKGH 469
             I   G    +  G+  +A+   +   +   D+++  G G+
Sbjct: 418 RSIRQRGQIEPVYVGD-KDALPGILANIMQDGDIVMTQGAGN 458


>gi|194336194|ref|YP_002017988.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308671|gb|ACF43371.1| UDP-N-acetylmuramate [Pelodictyon phaeoclathratiforme BU-1]
          Length = 493

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 18/287 (6%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           +     R    H  +I+        ++ +     +        F +G             
Sbjct: 109 MPELVRRHLIAHNSSIVVAGTHGKTTTTSLVAWLLEHGGLKPGFLVG------------- 155

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGS--FTNLGRDHIDY 219
              P    L    S  S +G      +         R   +          N+  DH D 
Sbjct: 156 -GIPENFSLGCRASGRSEEGFFVTEGDEYDTAFFDKRSKFLLYRPDIAIINNIEFDHADI 214

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             + +    +  RLF  L+P     ++  DD  + EV  RA     R             
Sbjct: 215 FDSLEDIKRS-FRLFVNLIPGNGTLLVNGDDKVALEVASRAFCRVERFGLTRESEWSACN 273

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               +  +     +           PL G + + N+L A       G+    ++  +   
Sbjct: 274 LSADSEASTFD-LLYQGTLLGSIRIPLFGNYNIMNSLAAIAAATHSGLSVEAIIRAMPLF 332

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                R E VGT +    +  D+AH   ++ + L+ +  + +GR I+
Sbjct: 333 KRPKRRMEIVGTYAHNITLVEDFAHHPTAIRVTLEALGELYTGRRII 379


>gi|313637657|gb|EFS03043.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           S4-171]
          Length = 350

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 97/303 (32%), Gaps = 36/303 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG+ GK+S    +  +      +S+ IG  +   +   +        +   +   
Sbjct: 5   TSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEY-----FALEACEYQR 59

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +  +   T+  +                      TN+  DH DY ++    FNA   L +
Sbjct: 60  HFLAYKPTYAIM----------------------TNIDWDHPDYFKSVDDVFNAFETLGK 97

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +       A+    D     + K   +        G + +F     +      +      
Sbjct: 98  Q----VKKAVFALGDDVE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTRFDVYHR 151

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F  P  G+  V NAL    LC   G+    V   L+    V  RF         
Sbjct: 152 DEFLASFEIPAYGDHNVLNALSVIALCDYEGLPVDAVKAELKTFEGVKRRFSITDKG--N 209

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAI 414
             +  DYAH  + +   +   R     + IV         + +  + G   +L+LAD   
Sbjct: 210 QVLVDDYAHHPSEIRATVNAARQKYPDKKIVAVFQPHTFTRTRTFLQGFADSLNLADEVY 269

Query: 415 VTD 417
           + D
Sbjct: 270 LCD 272


>gi|299140754|ref|ZP_07033892.1| tetrahydrofolate synthase [Prevotella oris C735]
 gi|298577720|gb|EFI49588.1| tetrahydrofolate synthase [Prevotella oris C735]
          Length = 427

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 47/374 (12%), Positives = 102/374 (27%), Gaps = 30/374 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ----------------- 158
             + V GT+GK S +  +  + Q+ G           I    +                 
Sbjct: 47  KTIHVAGTNGKGSCSHSLAAMLQKKGYKVGLYTSPHIIDFRERIRVNGQCISEKAVIDFV 106

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD------QHRLDGIKLIAGSFTNL 212
           +       P++ +      +         +     ++          + I  I    TN+
Sbjct: 107 EKERNFFEPLHPSFFELTTALAFKYFAEQKVDIAVIEVGLGGRLDSTNIITPILSIITNI 166

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
             DH  +          +     +            +     E   +  +          
Sbjct: 167 SFDHTQFLGNTLPQIAYEKAGIIKKGIPVIIGEYTKETRPIFESKAKEKSCPICFAQDNQ 226

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           +  +    K      K     S   +    L        +   L A  +  A GID +  
Sbjct: 227 EIIYSEADKTGGRTYKTTHFGSFHAE----LAGDYQVKNMNTLLNAVNVLKAQGIDLSDE 282

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           +  L+ +  +          +R  +   D  H     + ++  I+     ++ +VFG   
Sbjct: 283 ICALDHVTALTHLIGRWMEVNRLPKAICDTGHNVGGWQYLVPQIKAQPCKQLRIVFGMVD 342

Query: 393 DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D+D     +MG +    A          R+   +K+  + +          +  EA   A
Sbjct: 343 DKDID--TVMGML-PKQAIYYWTQATTKRAVPADKVSDKALQYGLSGHIYKSVKEAYSHA 399

Query: 453 IEMLNKQDVLVVAG 466
           +   +  D + + G
Sbjct: 400 LAEADNADFIFIGG 413


>gi|228470130|ref|ZP_04055039.1| folylpolyglutamate synthase [Porphyromonas uenonis 60-3]
 gi|228308268|gb|EEK17123.1| folylpolyglutamate synthase [Porphyromonas uenonis 60-3]
          Length = 439

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 3/138 (2%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVF 388
              V     +L+ + G      T S    I  D AH    + ++   +   T   + ++ 
Sbjct: 282 HDEVARGFAELYKLSGLRGRWETISTNPHIVCDTAHNPAGIAVVAHQLEEATYDHLYIIV 341

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA 448
           G   D+D      +   +         T  + R+   E+++              +  EA
Sbjct: 342 GMSADKDIDTNLALLPSSARYY---FCTTASQRTLPAEELQQRAEAIGLRGRAYPSVEEA 398

Query: 449 IRTAIEMLNKQDVLVVAG 466
           ++  +   N  D++ V G
Sbjct: 399 LQEVLAHANAGDLIFVGG 416


>gi|225549420|ref|ZP_03770392.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
 gi|225370048|gb|EEG99489.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
          Length = 468

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 59/417 (14%), Positives = 130/417 (31%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+       + +    + + +  + L   + + Y       + ++G+ GK++ 
Sbjct: 75  LIVYSSAYNKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGISGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +   +  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A    +   L K    II 
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEA-FLQYINNLKKNGILIIN 225

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVG-----YQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
           +DD    ++ ++ +     + S G              +           ++VE K   F
Sbjct: 226 SDDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSEYFCFSFLGLLNVELKTVLF 285

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L     +    +          D    ++ + K +    R   V     G     DY
Sbjct: 286 HNVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEENGVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-- 418
           AH    ++  L  I+     + I++        R +       ++    ADI I+ +   
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSA-ADILILHNIYL 404

Query: 419 ------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNRENFNP-DELSVKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|117620663|ref|YP_858019.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562070|gb|ABK39018.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 456

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 106/354 (29%), Gaps = 24/354 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV GT GK++ AS +  + + + L    +       +F    RL +        
Sbjct: 101 QDRWVLAVAGTHGKTTTASMLAWVLEYAKLEPGFL-IGGVPGNFPVSARLGS-------A 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
               + +        +  S  +  H             NL  DH D      A    +  
Sbjct: 153 PFFVIEADEYDCAFFDKRSKFVHYH------PRTLVMNNLEFDHADIFPDLAAIQR-QFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P     +    D     V K    +   ++  G         K+    +  +V 
Sbjct: 206 HLMRTVPSNGRVLFPKGDENLAAVRKMGCWSEVELV--GQDDAQWKAVKLADDGSAFEVW 263

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    K  +  +   GE  V N L+A       G+     +  L +      R E  G  
Sbjct: 264 LD-GVKQGEVHWECIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKG-E 321

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDLA 410
             G  +Y D+AH   ++E  L  +R  +   RI+ V     +  + G          D A
Sbjct: 322 VAGISVYDDFAHHPTAIETTLGGLRAKVGKARILAVLEPRSNTMKLGVHKEELAGCFDGA 381

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D            D  ++ A +           +    I   +      D +++
Sbjct: 382 DEVFFFQPPNIGWDLGEVTAHMTR---PAKVFNDLETLINRLVAECRDGDHILI 432


>gi|315633815|ref|ZP_07889104.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
 gi|315477065|gb|EFU67808.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
          Length = 434

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 128/395 (32%), Gaps = 54/395 (13%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   +++           + VV +              +  + I+A+TG++GKS+V
Sbjct: 67  LIVISPGLAVKTPEIQTALQAGVEVVGDIE--------LFCREADKPIVAITGSNGKSTV 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ + +GLS    G                   + L      +         +E 
Sbjct: 119 TTLVAEMAKAAGLSVGMGGNIGIP-------------ALSLLNQSHDI-------YILEL 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +K +A +  N+  DH++ +   Q Y +AK+++++        A++  +
Sbjct: 159 SSFQLET--TYSLKTVAATVLNVTEDHMNRYVDLQDYRHAKLKIYDN----CQTAVVNGE 212

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +    +                     +K   +   + +    E K       L G 
Sbjct: 213 DPLTLPTTQHPEKRVSFAEHHADYWLKNENQKTYLMARGEVILACDEMK-------LTGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  L  A GI+   +   L +   +  RF+          I    A    S 
Sbjct: 266 HNYMNALAAIALAQAAGINLLGIQTALREFGGLEHRFQVAHMAHGVRWINDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++   +G++ ++ G  G +      +   I            D           
Sbjct: 326 VAALTGLQ--VAGKLYLLLGGDG-KGADFSELATLINQPHIFCYCFGQDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            ++              +AI      L   DV+++
Sbjct: 373 KQLAALSSQSQLFDTMEQAIAAIRPQLQAGDVVLL 407


>gi|298245969|ref|ZP_06969775.1| UDP-N-acetylmuramate/alanine ligase [Ktedonobacter racemifer DSM
           44963]
 gi|297553450|gb|EFH87315.1| UDP-N-acetylmuramate/alanine ligase [Ktedonobacter racemifer DSM
           44963]
          Length = 500

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 67/432 (15%), Positives = 128/432 (29%), Gaps = 43/432 (9%)

Query: 68  AEAIVVSSAYSLQDF--SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+A+++S A    D      + +    + V   ++ L            + +L+V G  G
Sbjct: 63  ADALIISPAVPALDPQNPELLEAQRRGIPVKTWQELLGTLTE------GKCLLSVCGVHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KSS  S +  +   +G+        + +  F  + RL               +     + 
Sbjct: 117 KSSTTSMLSLMLVDAGMD-PTCEIGAVVPRFGANYRLGQSEYFV--NEADEFNHNFWHYH 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              A  + ++    +              +H        + +     +   +       +
Sbjct: 174 PRLAVVNAIEFEHPEFFHNYEEFL--YAFEHFVRGMDIASNWPLPPTIIVNIDSPGCRDL 231

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIHLKKVCAIHNKQQVTISVEGK------ 298
               D ++  ++  +     R        +       V                      
Sbjct: 232 CAHLDGWAGSIVNYSIQDLSRDTPEHIGDRLTFEAYDVKLEGETCFRVRLRNAPAGVKLP 291

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN------ 352
           D  +   LPG   V NAL A      +G     +   LE       RFE           
Sbjct: 292 DVLYRLQLPGIHYVQNALAALAAAYTVGAPLESIARTLEGFTGARRRFEIRHQGALVVGE 351

Query: 353 --SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALD 408
                  +  DYAH   ++ + L+  R    GR ++         + K       + A D
Sbjct: 352 RTCDDVILVDDYAHHPTAIALTLEAARKRYPGRRLIAVYQPHMYSRTKTFFEQFLQ-AFD 410

Query: 409 LADIAIVTDDNPRSE------DPEKIRAEIIH------GIPGFIEKGNRIEAIRTAIEML 456
            ADIAI++D  P  E         ++ +EI             +  G+  E  +T    L
Sbjct: 411 AADIAIISDIFPAREVDTGLVHTRQLVSEIAKRPRFSQEGAQILYGGSVQETTQTIQNNL 470

Query: 457 NKQDVLVVAGKG 468
              D++++ G G
Sbjct: 471 RSGDIVLIMGAG 482


>gi|269795573|ref|YP_003315028.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
 gi|269097758|gb|ACZ22194.1| UDP-N-acetylmuramate--L-alanine ligase [Sanguibacter keddieii DSM
           10542]
          Length = 499

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 11/148 (7%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           D A  +  +        R+E  G    G  +  DYAH    +  +L+  R +     + V
Sbjct: 316 DPAAAVAAVWAFRGTGRRYESRG-TVGGVEVVDDYAHHPTEVAALLRAARALVGTGSLRV 374

Query: 388 FGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE-----KIRAEIIHGIPGFI 440
                   R +       + ALDLAD  +V D     EDP+      +  + + G     
Sbjct: 375 LFQPHLFSRTRIFAQEFAE-ALDLADDVVVCDVYAAREDPDPEVGPHLLVDRMTGRGRV- 432

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +R+EA  +        D+++  G G
Sbjct: 433 -VADRVEAATSLAGSAEPGDLVLTVGAG 459


>gi|149196463|ref|ZP_01873518.1| UDP-N-acetylmuramate-alanine ligase [Lentisphaera araneosa
           HTCC2155]
 gi|149140724|gb|EDM29122.1| UDP-N-acetylmuramate-alanine ligase [Lentisphaera araneosa
           HTCC2155]
          Length = 458

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 109/413 (26%), Gaps = 61/413 (14%)

Query: 72  VVSSAYSLQDFSATIRSNTP-ILVVDNT-RKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           V S A  L  FS+ +  + P  L   NT R   S   +    +     +AV G+ GK+SV
Sbjct: 71  VSSFAPDLIVFSSALEDDNPDFLAAPNTARMHRSQAIAAAVDQSGLKAIAVAGSCGKTSV 130

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +++    +  G  +  +           D                   S G        
Sbjct: 131 TAWIAATMRAMG-KAPVMINGGYSPDLESDTHPGNFGDGSDYVIFEADESDGSLVNFTPE 189

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S  L+                   D        +  F   +   +  L  +  A +  D
Sbjct: 190 LSLLLNMG-----------------DDHHSKDKLEVMFKTFLDNAKHALVNDELAYLAKD 232

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
               K  +    +     +    QG    L       ++  V                  
Sbjct: 233 HPSHKSFLSEQADFSLSQVQHNQQGVTFSLNGDFVQTSQWGV------------------ 274

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL         G     +L  +     V  RFE  G   +   +Y DYAH    +
Sbjct: 275 HSADNALAVIASLATCGFSLEEILPAMLAFCGVRRRFELKG-RVKNVPLYDDYAHNPQKI 333

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-------DIAIV------- 415
              +   + I +G ++V F   G    G    M +             D  +        
Sbjct: 334 AACIAAAQAIYNGPVLVFFQPHGYGPLGF---MAEALQRELEGVLNPQDKFVFLPVFYAG 390

Query: 416 --TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             T   P S   +++            E  +R        E       ++V G
Sbjct: 391 GTTSFKPTS---KEVCESYAQAGLKVDELADRELCSAYLAEQAKDYSCILVVG 440


>gi|114046326|ref|YP_736876.1| UDP-N-acetylmuramate [Shewanella sp. MR-7]
 gi|113887768|gb|ABI41819.1| UDP-N-acetylmuramate [Shewanella sp. MR-7]
          Length = 465

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 117/355 (32%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A    + 
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQK-QF 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P +   I  AD    K+ ++    +      +    K  H K +    ++ +V
Sbjct: 208 HHLIRTVPGQGKVIWPADSHAVKQTIEMGCWSEQETFHIAEVTKGWHAKALSDDCHEFEV 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E +     + L G+  + NA++A      +G+  +  +  L +      R E +G 
Sbjct: 268 FFDGESQ-GVLEWALIGQHNIENAMMAIAAARHVGVKPSAAIAALTRFVPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   +K IR  +   +I +V     +  + G        ++  
Sbjct: 326 TVHGVSVYDDFAHHPTAIATTIKGIRAKVGQSKITIVLEPRSNTMKSGVHKDTLAHSMLQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + ++     +  +    +  +    +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVSASAKAGDTIVV 437


>gi|313898993|ref|ZP_07832520.1| bifunctional protein FolC [Clostridium sp. HGF2]
 gi|312956192|gb|EFR37833.1| bifunctional protein FolC [Clostridium sp. HGF2]
          Length = 412

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 113/382 (29%), Gaps = 34/382 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              AS    ++    + + GT+GK S  + ++ I Q +G           I+   +    
Sbjct: 28  QYMASLGNPQNRLRSIHIAGTNGKGSTTNDIRSILQAAGYKVGSFTSPFMITHLDRIRIN 87

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF------------T 210
                      ++           +      +       ++                  T
Sbjct: 88  NQDIREEAFLGITNRYYDSWMEWDLSMFEIDMCIAVFYYLEEQVDFCVFETGLGGRKDAT 147

Query: 211 NLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSV 270
           N+ +  +             +    E + KE   I+           K       +  + 
Sbjct: 148 NILQPLVSVITNIGMDHMEFLGDTLEKIAKEKAGIVKEGIDLITAEDKECCLQVFQKHTA 207

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA-----I 325
               + I   ++  I           G   D        +Q  NA +A  +C+       
Sbjct: 208 SAHAQCIKAGEISNIQETADGLSFDYGNVKDVALFGKARYQCRNAALAIEVCLYLQRQGH 267

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII 385
              +   L       V  GRFE   T S+   I +D AH ++ +  + + ++ +   +  
Sbjct: 268 IRLTEAQLRTGLHQAVWIGRFE---TISKEPLIILDGAHNADGIHALCETLKQMEDVQ-- 322

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           V+F    D++      M +    +  +I +V   N R+ D       ++ G        +
Sbjct: 323 VLFSVLKDKNFE---AMLQELETVCGEILVVPFYNERALDVR-----LLEGRKHIHLMES 374

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
              AI  A++       LV+ G
Sbjct: 375 YERAIPYALQKAKP---LVITG 393


>gi|153206770|ref|ZP_01945611.1| FolC bifunctional protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165918542|ref|ZP_02218628.1| FolC bifunctional protein [Coxiella burnetii RSA 334]
 gi|212218372|ref|YP_002305159.1| dihydrofolate synthase [Coxiella burnetii CbuK_Q154]
 gi|120577133|gb|EAX33757.1| FolC bifunctional protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165917788|gb|EDR36392.1| FolC bifunctional protein [Coxiella burnetii RSA 334]
 gi|212012634|gb|ACJ20014.1| folylpolyglutamate synthase [Coxiella burnetii CbuK_Q154]
          Length = 416

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 110/375 (29%), Gaps = 29/375 (7%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ V GT+GK SV   ++ I   +G           +    +      P+   L
Sbjct: 33  NNFACPVVTVAGTNGKGSVVKSLESIYLAAGYKVAAYTSPHLLQFNERLRLNGEPATDEL 92

Query: 171 AKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFN 228
                        H  +       L    +   + +      +G           +    
Sbjct: 93  FIEAFKFIEDNRNHQPLSFFEFTTLAIFYICKKQNLDILLLEVGLGGRLDAVNIVEPDVA 152

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  +                +  + +     G          + +HL +      +
Sbjct: 153 VITTIDIDHTDWLGEDRESIGREKAGIIRRHKPVIGGDPNLPNSVYEQVHLLEAPFYQLE 212

Query: 289 QQVTISVEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +        +++ +  P                +  +L+      +    S   L    K
Sbjct: 213 KDFFAVSTKENWQWQGPTQDYQGLPLPSLKIENIATSLMVIHCLQSQLPVSQHSLIAGIK 272

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQ- 396
             V+PGRFE          I  D AH   +   + + +R     GR + V G   D+D  
Sbjct: 273 NAVLPGRFE---WIQTPAPIVFDVAHNPQATAYLSEQLRKTDHAGRTLGVVGMLRDKDIP 329

Query: 397 -GKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
              +P++  I    A  L++    T  N      + + +E+   +    +  +  +A + 
Sbjct: 330 GALKPMLPCIDQWYAGTLSESRGATSAN-----LQNVLSELQ--VENCYDFDSVADAFKK 382

Query: 452 AIEMLNKQDVLVVAG 466
           A+E    QD +VV G
Sbjct: 383 AVEDCRPQDRIVVFG 397


>gi|318042994|ref|ZP_07974950.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0101]
          Length = 480

 Score = 45.3 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 134/431 (31%), Gaps = 63/431 (14%)

Query: 62  QAIAQGAE---AIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            AI  G      +VVSSA      +     R+   I    +    +   A+       ++
Sbjct: 66  AAIRSGTSTQPLVVVSSAVPATNPELQEARRAGLEIAHRSDVLAAM--IAA-------QS 116

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AV G+ GK++ ++ +  +   +                        P+ +      ++
Sbjct: 117 SVAVAGSHGKTTTSTLIASLLHATDHD---------------------PTAVIGGVVPAF 155

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
            S+      ++  +        L   +   G  TNL  DH D+         A +     
Sbjct: 156 GSNGRNGKGALLVAEADESDGTLVKFQAWLGVITNLELDHTDH--------YADLVALIA 207

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            L +               ++    NA     +   +G       V    +        +
Sbjct: 208 TLQRFGRGCEQLLANRDCPILSEQFNASHWWSTTNPEGVDFAAIPVELSGDSTLAEFYEQ 267

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+    F  PLPG   + NA  A   C   G+  A +   +E L     RF++ G     
Sbjct: 268 GQCVGRFTLPLPGLHNLSNATAAMAACRLHGVSFAELRLAVESLQAPGRRFDYRG-TWAE 326

Query: 356 GRIYVDYAHTSNSLEMILKNIRTIT-SGRIIV------VFGCGGDRDQGKRPIMGK---I 405
            ++  DYAH  + +   L   + +  SGR  +      V          +     +   +
Sbjct: 327 RQVVDDYAHHPSEVGATLATAQLMVSSGRSPLPEVPQRVLAVFQPHRYSRTAEFLEPFAV 386

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRA--EIIHGIPG-----FIEKGNRIEAIRTAIEM-LN 457
           AL  AD  ++       E P    +   +   I        +   + +E +  A+     
Sbjct: 387 ALGQADEVLLAPLYAAGEAPIAGISSHALAAAIQRLQPDLTVTVTDSLEELADAVAQRSL 446

Query: 458 KQDVLVVAGKG 468
             D+++  G G
Sbjct: 447 PGDLVLAMGAG 457


>gi|332663135|ref|YP_004445923.1| UDP-N-acetylmuramate--L-alanine ligase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332331949|gb|AEE49050.1| UDP-N-acetylmuramate--L-alanine ligase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 456

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 98/313 (31%), Gaps = 31/313 (9%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
              +A+ GT GK++ +S    + + +G+            +F  +  L +   + +    
Sbjct: 108 MKTVAIAGTHGKTTTSSLTAHLLRSTGVDCTAF-LGGIARNFESNYVLGSSEWVVVEADE 166

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              S                       +     S  ++  DH+D +   +   N   + F
Sbjct: 167 FDRSFLH--------------------LHPDIASIMSMDADHLDIYGDAETLLNTGFKAF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQVTI 293
            + +       +  +       +    +A     S G +G       +           +
Sbjct: 207 AKQIKPGGTLWLQHN-------LTTHFDATTAYRSFGVEGGDYQAHNIRVEKGYFVFDYL 259

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S E +      PLPG   + NA VA  + + +G     + + LE    V  RFE +  + 
Sbjct: 260 SPEREIKGLRMPLPGRHNIENATVAMSIALQLGASDEALRDGLEAFRGVKRRFEIIHRDE 319

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADI 412
                + DYAH    L   +   R +     I          + +    G   ALD  D 
Sbjct: 320 E-VAFFDDYAHHPTELNAAIGAARELFPAARITGVFQPHLYSRTRDFAEGFAEALDGLDE 378

Query: 413 AIVTDDNPRSEDP 425
             + D  P  E P
Sbjct: 379 IYLLDIYPARELP 391


>gi|262281543|ref|ZP_06059322.1| hypothetical protein HMPREF0012_03490 [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257002|gb|EEY75741.1| hypothetical protein HMPREF0012_03490 [Acinetobacter calcoaceticus
           RUH2202]
          Length = 457

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 87/282 (30%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALTAELISIDGSHFKVLENGNVVGEVKWSMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G    G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVALEQACEALSNFGGVKRRMELLG-TVNGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADDVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIEAASNHAQVSRSLDEIIERIVNEAGEGDAVVI 435


>gi|221212476|ref|ZP_03585453.1| bifunctional protein FolC [Burkholderia multivorans CGD1]
 gi|221167575|gb|EEE00045.1| bifunctional protein FolC [Burkholderia multivorans CGD1]
          Length = 436

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     R
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHAAAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLR 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+   E++ A +   G+            +  +A   A
Sbjct: 351 HLKGEI-----DHWCVTDLPLPRAASAEQLEAALRKAGVQDGPDSSVTRYASPADAFSDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|126208913|ref|YP_001054138.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae L20]
 gi|126097705|gb|ABN74533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 454

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 167 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSGGCILSAAA 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 226 DENVQNTLKMGSYSELQF----IGEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGA 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G   +G  +Y D+AH   ++
Sbjct: 282 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVKGITVYDDFAHHPTAI 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  LAD     V   +    
Sbjct: 341 AATIDALRGKVGKEQRILAVLEPRSNTMK---MGVHKEEIAPSLADANAVFVYQPDTIPW 397

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 398 AVSVITDNLTQPAKWS---ADLDELVKMIVEEAKPTDHILV 435


>gi|323491031|ref|ZP_08096223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
 gi|323314695|gb|EGA67767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
          Length = 441

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 100/304 (32%), Gaps = 41/304 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L            I VV +         +    K    ++A+TG++GKS
Sbjct: 71  ADLVVANPGIALATPEIQQVLAANIPVVGDI-----ELFAWQVDKP---VIAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V  +  Q+ + +GL     G     +                        +       +
Sbjct: 123 TVTDWTGQVAKATGLKVGVGGNIGVPALDL--------------------LTLDADLYVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +F NL  DH+D +Q  + Y  AK+R+F+        A   
Sbjct: 163 ELSSFQLET--TSSLAPKAAAFLNLTEDHMDRYQGMEDYRQAKLRIFDHAQSCIVNAE-- 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                     K+ +        V +         V      + + ++ +         L 
Sbjct: 219 ---------DKQTYPDQNNKHLVEFSLTDSTQFSVIDCDGIEYLAMNGKQIIPAAELSLV 269

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NALV   L   +G+D    L+ L+  + +  R + V  N     +    A    
Sbjct: 270 GRHNVANALVVLALLSQVGVDIEKGLDALKSYNGLTHRCQVVADNRGIKWVNDSKATNVA 329

Query: 368 SLEM 371
           S   
Sbjct: 330 STMA 333


>gi|71065005|ref|YP_263732.1| folylpolyglutamate synthetase/dihydrofolate synthase [Psychrobacter
           arcticus 273-4]
 gi|71037990|gb|AAZ18298.1| probable folylpolyglutamate synthetase/dihydrofolate synthase
           [Psychrobacter arcticus 273-4]
          Length = 455

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 105/401 (26%), Gaps = 38/401 (9%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
             + L +  S         +  V GT+GK S  + + QICQ +G  +             
Sbjct: 46  VAEALGVIQSAKDD---AYVFTVAGTNGKGSTTAVIAQICQAAGYKTALYQSPHLSVFNE 102

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQHRLDGIKLIAGSFTN 211
           +           +  A             +  S         L         +       
Sbjct: 103 RVRINGEMVSDEILIAAFSTVENARLQCDLTLSFFEMTTLAALLIFSEADCDVWVLEVGL 162

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA------DDAYSKEVMKRAHNAGC 265
            GR  +             + +       ++   I A       D  S            
Sbjct: 163 GGRLDVVNIIDPDMAVITNIAIDHVDWLGDNVEAIGAEKAGILRDGISVIYGAAEMPNSV 222

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI 325
           +     +Q     + K  +      +T            P P       A   + +  + 
Sbjct: 223 QQTIDKHQATCYQVGKDFSYRENDSITWQYSNAAVTLQLPRPALSLTNTANALSAVLASP 282

Query: 326 GIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR-- 383
                  +E   +   + GRF++            D AH    +E +L  +  +      
Sbjct: 283 LKVDINAIEQALQTVKLAGRFDYR--EVHERHWLFDVAHNEQGVEFLLAQLVPLWQQHLA 340

Query: 384 --------------IIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTDDNPR---SEDP 425
                         I ++F   GD+D  K       A   ++D  I   D PR   +E  
Sbjct: 341 QQNTAQQATGKPATIKMLFSMLGDKDINKVVQRLTTAGLPISDWFIAEIDYPRAATTEHL 400

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           + I A  +       E     EA    I     QD++VV G
Sbjct: 401 QGILASYVDDA-QIHEFARLQEATHAIINASQPQDLIVVCG 440


>gi|56807398|ref|ZP_00365373.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Streptococcus
          pyogenes M49 591]
          Length = 86

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 10 DFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAE 69
          +F E+++    +   ++      +S DSR +    +F A  G       ++ +AI  G +
Sbjct: 12 NFREVLDADG-YHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK-ADYLKEAITNGLQ 68

Query: 70 AIVVSSAYSL 79
            +    Y L
Sbjct: 69 LYISEGDYEL 78


>gi|253998170|ref|YP_003050233.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
 gi|253984849|gb|ACT49706.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
          Length = 460

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 126/383 (32%), Gaps = 43/383 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V+S   +L +          I VV +         ++   +    ++A+TG +GK++V
Sbjct: 71  LVVISPGVALAEPEVQQALANGIQVVGDV-----ELFAQFRPR-SSKVIAITGANGKTTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++C+ +GL +   G        A     T  +P                   +E 
Sbjct: 125 TTLVGEMCKAAGLKTVVAGNIGLPVLDALRQVETDGAP---------------DVYVLEL 169

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +   A +  N+  DH+D +     Y  AK R+ +        A +   
Sbjct: 170 SSFQLET--TSSLAPDAAAVLNVTEDHMDRYPGMPEYAAAKARILKG-------AGVQVL 220

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +         A      V          H   + A+ ++  +              +PG 
Sbjct: 221 NREDAWCRNMALPDQPMVTFGLDLPVESHAYGLLALRDQLWLAQGAHPILHVEELRIPGL 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  LC AIG+D A +   L +   +P R E+V                  + 
Sbjct: 281 HNAANALAALALCRAIGVDWAPLQHVLREFKGLPHRVEWVADLHDIAFYDDSKGTNVGAT 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  +      R +V+   G  + Q   P+  +     A   ++   +        + 
Sbjct: 341 CAALAGLP-----RKVVLIAGGDGKGQDFSPLR-EPVDQNARAVVLIGRD------ATLI 388

Query: 430 AEIIHGIP-GFIEKGNRIEAIRT 451
              + G P   +   +  +A++ 
Sbjct: 389 EAALQGSPVPRLHAESMEDAVQQ 411


>gi|253568797|ref|ZP_04846207.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 1_1_6]
 gi|251840816|gb|EES68897.1| UDP-N-acetylmuramate-alanine ligase [Bacteroides sp. 1_1_6]
          Length = 467

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 108/353 (30%), Gaps = 40/353 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H    L V GT GK++ ++    +  +S +            ++  +  L+  SP  + +
Sbjct: 110 HSSKGLCVAGTHGKTTTSTMTAHLFHQSHIECTAF-LGGISKNYGTNLLLSQKSPYTVIE 168

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
           A  +  S       +                      T    DH+D + T       K  
Sbjct: 169 ADEFDRSFHWLSPYMSV-------------------ITATDPDHLDIYGT------EKAY 203

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA-IHNKQQV 291
           L              A        ++    AG RV +        H + +          
Sbjct: 204 LESFEHYTTLIQPGGALIIRKGISLQPKVQAGVRVYTYSRDEGDFHAENIRIGNGEIFID 263

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            ++ + +  +    +P    + N +    L    G+    + + +     V  RF+F   
Sbjct: 264 FVAPDTRINNIQLGVPVSINIENGVATMALAHLNGVTDEEIRQGMNSFRGVDRRFDF-KI 322

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA- 410
            +       DYAH  + ++  + +IR +   + I          +  R      A  L+ 
Sbjct: 323 KNDQVVFLSDYAHHPSEIKQSVLSIRELYKDKKITAIFQPHLYTRT-RDFYQDFADSLSL 381

Query: 411 -DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            D  I+ D  P  E P       I G+   +   N    I     M  K+++L
Sbjct: 382 LDEVILVDIYPARETP-------IPGVTSKLIYDNLRPGIEK--SMCKKEEIL 425


>gi|161521161|ref|YP_001584588.1| FolC bifunctional protein [Burkholderia multivorans ATCC 17616]
 gi|189352662|ref|YP_001948289.1| folylpolyglutamate synthase [Burkholderia multivorans ATCC 17616]
 gi|160345211|gb|ABX18296.1| FolC bifunctional protein [Burkholderia multivorans ATCC 17616]
 gi|189336684|dbj|BAG45753.1| folylpolyglutamate synthase [Burkholderia multivorans ATCC 17616]
          Length = 436

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     R
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHAAAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLR 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+   E++ A +   G+            +  +A   A
Sbjct: 351 HLKGEI-----DHWCVTDLPLPRAASAEQLEAALRKAGVQDGSDSSVTRYASPADAFSDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|118618794|ref|YP_907126.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium ulcerans
           Agy99]
 gi|166224709|sp|A0PTI6|MURC_MYCUA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118570904|gb|ABL05655.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium ulcerans
           Agy99]
          Length = 488

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 73/287 (25%), Positives = 107/287 (37%), Gaps = 32/287 (11%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY       F E L      ++ ADD  S  + +R+   
Sbjct: 183 PHVAVVTNIEADHLDFYGSTEAYVGV-FDAFVERLAPGGALVVCADDPGSAALAERSAEL 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVT-------ISVEGKDFDFLFPLPGEFQVYNAL 316
           G RVL  G  G          +  +Q+ T       ++ E         +PG     N L
Sbjct: 242 GIRVLRYGSAGHAGAALAATLVSWEQRGTGAVAQIQLAGEADPRSMRLSVPGRHMALNVL 301

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A    I +G     VL+ L     V  RFE VGT     R++ DYAH    +   L+ +
Sbjct: 302 GALLAAIEVGAPVGEVLDGLAGFEGVRRRFELVGTAES-VRVFDDYAHHPTEVRATLEAV 360

Query: 377 RTITS----GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           R++      GR++VVF      R +      G  ALD AD   V D     E P      
Sbjct: 361 RSVVRQSGSGRLLVVFQPHLYSRTKAFAAEFGS-ALDAADEVFVLDVYAAREQP------ 413

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEML----------NKQDVLVVAGKG 468
            + GI G     +    +R   +               DV+V  G G
Sbjct: 414 -LTGISGASVAEHVTVPVRYLRDFSAVAEVVAAAAGPGDVVVTMGAG 459


>gi|239994466|ref|ZP_04714990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii ATCC
           27126]
          Length = 452

 Score = 45.3 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 112/355 (31%), Gaps = 29/355 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               ++ ++GT GK++ +S V  I + +G    + IG        +     +    I   
Sbjct: 101 KDRWVIGLSGTHGKTTTSSMVAWILEHAGLNPGYLIGGVPENFGVSARVGESPFFVIEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                 +       NL  DH D           + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYRPKTLVINNLEFDHADIFADL-GAIQTQF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                ++P+    +   +    ++++K+   +  + L   +        ++      +  
Sbjct: 205 HHLVRMVPENGLILTPNNTPAIEDMLKKGCWSSRQSLGKEWHA------ELLKKDGSEFN 258

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +          + L G+  V NAL+A       G+     ++ L     V  R E  G 
Sbjct: 259 VLHNGVIAGTVTWALVGQHNVDNALMAIAAAHHAGVTLPDAIDALSFFKNVKRRMEVKG- 317

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
                 +Y D+AH   ++   L  +R  + + RI+ V     +  + G        +   
Sbjct: 318 EVNNITLYDDFAHHPTAIATTLDGLRKKVGNARILAVLEPRSNTMKMGVHKDTLANSWQK 377

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   + +  P   D   +   + H         +  + ++    +    D ++V
Sbjct: 378 ADEVYLYE--PEGMDW-SLVDSVAHSNAPTHCFRDVEKIVQGVCNVAQPGDHILV 429


>gi|323339481|ref|ZP_08079760.1| dihydrofolate:folylpolyglutamate synthetase [Lactobacillus ruminis
           ATCC 25644]
 gi|323093095|gb|EFZ35688.1| dihydrofolate:folylpolyglutamate synthetase [Lactobacillus ruminis
           ATCC 25644]
          Length = 437

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRP 400
            PGRFE          I +D AH  +++E + K + T   G+ I V+ G   D++ G   
Sbjct: 302 WPGRFEK---IQEDPLIVLDGAHNPSAMEEVEKTLETNFKGKKITVILGILADKNSG--- 355

Query: 401 IMGKIALDLADI-AIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
            M ++ L       I+T  D PR     K   E     P  IE  +  EA+  A+    K
Sbjct: 356 EMIEVLLKNPKASIILTGFDGPRQVASPKKLHE---NHPRTIEIDDWKEALEAALM--QK 410

Query: 459 QDVLVVAG 466
            D+++ +G
Sbjct: 411 SDLILASG 418


>gi|113954195|ref|YP_729267.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9311]
 gi|123132801|sp|Q0IE55|MURC_SYNS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113881546|gb|ABI46504.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. CC9311]
          Length = 483

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 85/280 (30%), Gaps = 28/280 (10%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TNL  DH D+++             +         +I  DD     + +      C  
Sbjct: 187 IITNLELDHTDHYRNLDDLIET----MKTFGRGCKRLLINHDDPI---LKEHFQADACWS 239

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
           +       +  L                  K      PLPG   + N + A   C   G+
Sbjct: 240 VHHVETADYAALPVQLDGDRTIADYFEQGQKVGQITLPLPGLHNLSNVVAALAACRMEGV 299

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-------- 379
               +L  + +L     RF+F G   +  ++  DYAH  + ++  L   + +        
Sbjct: 300 PLEALLLAVTELRSPGRRFDFRG-EWQDRQVVDDYAHHPSEVQATLTMAQLMVQSGRSPL 358

Query: 380 --TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEIIHG 435
             T  R++ VF      R Q       +  +  AD  ++       E P E I +E++  
Sbjct: 359 PRTPQRLLAVFQPHRYSRTQEFLNAFAQALVS-ADALVLAPIYGAGEQPIEGINSELLAR 417

Query: 436 -------IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                             E      +     D+++  G G
Sbjct: 418 SIRLIDPNQPVFVASTMEELAGLVKQHSQPDDLILAMGAG 457


>gi|269962159|ref|ZP_06176513.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio harveyi
           1DA3]
 gi|269833243|gb|EEZ87348.1| folylpolyglutamate synthase/dihydrofolate synthase [Vibrio harveyi
           1DA3]
          Length = 420

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 104/364 (28%), Gaps = 15/364 (4%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    ++ V GT+GK S  + ++ I   +G S         I    +       +     
Sbjct: 46  KPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRINGVDAEDSKH 105

Query: 172 KALSYLSSQGVTHVSVEASSHG-LDQHRLDGIKLIAGSFTNL----GRDHIDYHQTQQAY 226
                   Q    +S+     G L   R+  ++ +      +      D  +      + 
Sbjct: 106 CEAFDYVEQQRGDISLSLFEFGTLAALRIFQVEKVDVVLLEVGLGGRLDATNVVDHDVSV 165

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL--KKVCA 284
             +      + L  +   I +      +              +V      I     +V  
Sbjct: 166 ITSLAIDHVDWLGDDINVIGFEKAGIYRAGKPAICGQPTPPATVAAHADDIQAEFFQVGI 225

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
             + Q      +     F         +     A  L      +  +   ++        
Sbjct: 226 QFDYQLTEKGWKWTSGAFALEDLPVPLLPLPNAATALMALGASELQITDINIVNGLNNAR 285

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDRDQGKRPI-M 402
               +     G  I +D AH  +S E  + K  R      I VV     D+D       +
Sbjct: 286 LAGRMQVLQTGPEIVLDVAHNPHSAEYLVEKVKRQYADKNIHVVVAMLHDKDIKATIEAL 345

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             IA      A +T   PR+   +++   +  G   F       EA  +A +   + DV+
Sbjct: 346 TPIATQWY-PASLT--GPRAATADELCQYLPQGQVQFQTPV---EAFESAQKHAAQADVI 399

Query: 463 VVAG 466
           +V G
Sbjct: 400 LVVG 403


>gi|257086352|ref|ZP_05580713.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis D6]
 gi|256994382|gb|EEU81684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis D6]
 gi|315026969|gb|EFT38901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2137]
          Length = 456

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQLI--GIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D       +       +  +              A     ++  + E         +
Sbjct: 218 -AEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLDGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L+    VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILL 424


>gi|254882624|ref|ZP_05255334.1| folylpolyglutamate synthase [Bacteroides sp. 4_3_47FAA]
 gi|319642036|ref|ZP_07996702.1| folylpolyglutamate synthase [Bacteroides sp. 3_1_40A]
 gi|254835417|gb|EET15726.1| folylpolyglutamate synthase [Bacteroides sp. 4_3_47FAA]
 gi|317386302|gb|EFV67215.1| folylpolyglutamate synthase [Bacteroides sp. 3_1_40A]
          Length = 428

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 99/386 (25%), Gaps = 28/386 (7%)

Query: 105 FASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              + +         + + GT+GK S +  +  I Q +G  +        I    +    
Sbjct: 34  LLDKYFNHPHRQFRTIHIAGTNGKGSCSHTLAAILQSAGYKTGLYTSPHLIDFRERIRVN 93

Query: 163 TTPSPIY--LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             P      +     + +     H S    +  +  H     ++            ID  
Sbjct: 94  GIPVSKEYVIDFVEKHRAFFEPLHPSFFELTTAMAFHYFAQSQVDVAIIEVGLGGRIDCT 153

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
              +        +  + +      +       +  + ++                    K
Sbjct: 154 NIIRPDLCVITNISFDHIQFLGNTLAKIATEKAGIIKEKTPVVIGETTPETKPIFTTRAK 213

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-----------------NALVAAGLCI 323
           +V A     +    +     +       +   Y                   L A  L  
Sbjct: 214 EVNAPIYFAEEEQLLHSSSINEKGKRIYQTTDYLNLEGELEGLCQLKNTNTLLSAIRLLK 273

Query: 324 AIGIDSALVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             G             ++  + G             +  D  H    +  I++ ++    
Sbjct: 274 QAGYQLTESNIRKGFSQVCELTGLMGRWQKLESEPTLICDTGHNVGGISYIIEQLKHQKY 333

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFI 440
            R+ +V G   D+D      M       A          R+   +++++  +  G+ G  
Sbjct: 334 ERLHIVIGMVNDKDISGVLSM---LPKNATYYFTKASVKRALSEKELQSLAMQSGLHGDT 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +   A+  A E  NK D + V G
Sbjct: 391 Y-PDVETAVTAAKEKANKNDFIFVGG 415


>gi|163790758|ref|ZP_02185184.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7]
 gi|159873938|gb|EDP68016.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. AT7]
          Length = 442

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 97/335 (28%), Gaps = 40/335 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
           N +AVTG+ GK+S    +  +      +S+ IG                P   +      
Sbjct: 105 NSVAVTGSHGKTSTTGLLAHVLSSLKDTSYLIG---------DGTGHGVPDADFFILEAC 155

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                 + +                         TN+  DH DY+ +    FNA      
Sbjct: 156 EYRRHFLAYRP------------------DYAIMTNIDFDHPDYYSSIDDVFNAFQS--- 194

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +  +   AI+   D     + K   N        G    F       +           
Sbjct: 195 -MAVQVKKAIVACGDDEQ--LQKIQANVPILYYGFGDHNDFQAKNMTRSTTGSTFDVYVR 251

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +     F  P  G+  + NAL    +C    ID   V+E+L+    V  RF         
Sbjct: 252 DEFYGHFDIPTFGKHNILNALSVIAICQYENIDKEGVMENLKTFKGVKRRF--TEKQILD 309

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             I  DYAH  + +   +   R     + I+         R         + +L+LAD  
Sbjct: 310 MVIIDDYAHHPSEIRATIDAARQKYPDKEIIAIFQPHTFTRTVALLSDFAE-SLNLADSI 368

Query: 414 IVTDD-NPRSEDPEKI-RAEIIHGIPGFIEKGNRI 446
            + D      E+   I   ++   I       +  
Sbjct: 369 YLCDIFGSVRENQGDITIQDMADKIDNGAVVLSEE 403


>gi|121612484|ref|YP_001000522.1| hypothetical protein CJJ81176_0854 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005456|ref|ZP_02271214.1| hypothetical protein Cjejjejuni_04415 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249382|gb|EAQ72342.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 313

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++AG+ F        +    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKAGFAFF------NNNKKEI 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ +GA AI+  +  +++D       +     V+N  + L  F            L  
Sbjct: 48  TQAVKKGAYAIITENDITIED------KDIFYFRVENLEQALVRFLRFFCEDKECEFLLF 101


>gi|285017564|ref|YP_003375275.1| hypothetical protein XALc_0769 [Xanthomonas albilineans GPE PC73]
 gi|283472782|emb|CBA15287.1| conserved hypothetical protein [Xanthomonas albilineans]
          Length = 458

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 140/414 (33%), Gaps = 37/414 (8%)

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPEN 116
           ++P+ I      ++V +A S  + +           V +  +     A  L  +      
Sbjct: 54  YLPEHIEADCAQVIVGNALSRGNLAVEA--------VLDAGRAYISGAQWLSEQVLPGRE 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            LAV GT GK++  S +  + Q +G     +        F    RL  P      + L  
Sbjct: 106 TLAVAGTHGKTTTTSILTWLLQSAGREPGFL-IGGVAEDFGVSARLGGPVAA-PQRPLFV 163

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
           + +        +  S  +    L  I        NL  DH D      A    +      
Sbjct: 164 VEADEYDTAFFDKRSKFVHYRPLVAI------LNNLEYDHADIFPDVAAIQR-QFHHLVR 216

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
            +P     I+  +DA+ +EV+             G+   F    ++ A    +   +   
Sbjct: 217 TVPHRGRLIVNGEDAHLREVLAMGCWTPVE--RFGFDPGFDWSARLLAADGSRFAVLHAG 274

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
            +     + L G   V NAL A     A+G+  A V+  L +   V  R E +G   +G 
Sbjct: 275 QQLGVVEWSLLGRHNVMNALAALAAAHAVGVAPAQVIPALARFRSVKRRLEVLGQA-QGI 333

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL------A 410
            +Y D+AH   ++   L+ +R       IVV      R    R  +G  A  L      A
Sbjct: 334 TVYDDFAHHPTAIRTTLEGLRAKVGTARIVV--AMEPRSNSMR--LGAHADALAPSLEVA 389

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLV 463
           D  +       + D  K+ A +        +     +A+  A++      D +V
Sbjct: 390 DAVVFLQRPELAWDAGKVIAAVRGQAHAATDV----DALLAALQTQARAGDHVV 439


>gi|206895549|ref|YP_002247146.1| UDP-N-acetylmuramate--alanine ligase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738166|gb|ACI17244.1| UDP-N-acetylmuramate--alanine ligase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 451

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 140/409 (34%), Gaps = 48/409 (11%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A+ +V SSA     ++F A +  + P+L        L               +AVTGT G
Sbjct: 66  ADFVVYSSAIKPDNEEFRAALDEHIPVLHRSEILADLLD---------EGLSVAVTGTHG 116

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           KSS   F+ Q  +  G     IG  + ++    + +L +   I                 
Sbjct: 117 KSSTTGFIAQGLELLGFDPTFIG-GAVVNPLGGNAKLGSGPVI----------------- 158

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                        L  I        NL  DH+ ++ T +    A +  F    P  S A+
Sbjct: 159 ----GEVDESDGSLVRIPASVKVVLNLDDDHLPFYGTMENLA-ATVHRFILGRPHNSIAV 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  +D     +++    +  RV   G+    I +  +       ++++  EGK F  L  
Sbjct: 214 LNYNDP----LLRGMDYSSRRVHWCGFGSPDIRIDALELEGVNPKISVCYEGKQFTILND 269

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
                     L  A   +     +      + +    P R + +  +  G  + VD A  
Sbjct: 270 EIFGKHNGLNLAMAFSVLVAMGINPNSAAKVLEEVQTPRRRQQILGSVNGTSVMVDIALH 329

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
              L+ + +     +  R++++F      R +       +     +D  ++T+  P  E 
Sbjct: 330 PTELKALREVF-ESSKRRVLLIFQPHRYSRYKLLFKDFVEELSLWSD-VVITEIYPSDEP 387

Query: 425 PEK-----IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E      +  EI  G        ++ +  +    ++N  D+++ AG G
Sbjct: 388 VEDTSSYPLYEEI--GSRNKFFYSDKEKLFQDLPNIMNGYDIVLFAGLG 434


>gi|157147488|ref|YP_001454807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           koseri ATCC BAA-895]
 gi|157084693|gb|ABV14371.1| hypothetical protein CKO_03287 [Citrobacter koseri ATCC BAA-895]
          Length = 438

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 134/400 (33%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D          L                +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDA------AREL--------------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADARCVSFGVNMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +         
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSSLTRYLGG-------DRVRLYCFGRDGAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     L   D++++
Sbjct: 377 LAALRPEIAE------QTETMEEAMRLLAPRLQPGDMVLL 410


>gi|327184054|gb|AEA32501.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1118]
          Length = 437

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +     +   +KK         +    +  +F     L G+  + N+     
Sbjct: 222 IPKYTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNSTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + + L        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIRDGLLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|302187259|ref|ZP_07263932.1| folylpolyglutamate synthetase [Pseudomonas syringae pv. syringae
           642]
          Length = 434

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 108/374 (28%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPAPQVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY--------LSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHID 218
              ++          +     +   A+    +Q RLD + L           NL    + 
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADLA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FI 277
              +        +    E +  E   I  A                 +   +G       
Sbjct: 158 LVTSIGVDHAEYLGDTRESVAFEKAGIFRAGCPALCGDPAPPEPLLAKARELGCPLLLRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHL 336
               +    +        +G+  +       +  + NA +A      +G      V   +
Sbjct: 218 RDFDLSIGDDSWDWRGVADGERVELRGLPLLDLPMQNAALALQAFALLGYPLQPDVTGKV 277

Query: 337 EKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGD 393
                + GR +    +  G    + +D  H  ++ +    +  R    G+   VFG  GD
Sbjct: 278 LAETRLAGRLDRRVVSWHGKSLNLLLDVGHNPHAAQFLGQRLARQPVGGKRRAVFGLLGD 337

Query: 394 RDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D       +  +  + A   + T  +  +E+ +     +   +  +        A+   
Sbjct: 338 KDLDGVVAHLAPVIEEWAVAPLPTSRSRPAEELQAALQNLGARVTSYQSI---ALALEAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|271501290|ref|YP_003334315.1| FolC bifunctional protein [Dickeya dadantii Ech586]
 gi|270344845|gb|ACZ77610.1| FolC bifunctional protein [Dickeya dadantii Ech586]
          Length = 422

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 97/369 (26%), Gaps = 24/369 (6%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
            +    +  V GT+GK +    ++ I   +GL          +    +           L
Sbjct: 45  QQPAPRVFTVAGTNGKGTTCCTLESILSAAGLRVGVYSSPHLLRYTERVRIQGQELAESL 104

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                     G    S+       +   L  + L   +  ++    +       A     
Sbjct: 105 HAEAFAAVEAGRGGTSLTY----FEFGTLAALWLFKQAQLDVVILEVGLGGRLDATNIVD 160

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC------- 283
             +               +D  S    K     G R   VG     + +  V        
Sbjct: 161 ADVAVVTSIALDHTDWLGNDRDSIGREKAGIFRGNRPAVVGEPDMPVSIAAVAQEKGALL 220

Query: 284 ----AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
               A             +  D  +       V  A  A  L      D AL +  + + 
Sbjct: 221 FRRGADWQFSLQDGGWRWQSGDVCYEALPIPSVPLANAATALAALQVSDIALSVNVIRQG 280

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
                        S    + +D AH  ++   +   +  +   G++  V G   D+D   
Sbjct: 281 LRQAQLPGRFQIVSEKPLLILDVAHNPHAAAYLAARLADLPRTGQVRAVVGMLADKDI-- 338

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
            P          D+      + PR         ++   +       +   A R A++   
Sbjct: 339 -PGTLAHLKPQVDVWYCAPLEGPRG----ASADQLAEHLALCTRYSDVATAWRQAMQDAG 393

Query: 458 KQDVLVVAG 466
           + DV++V G
Sbjct: 394 ENDVVIVCG 402


>gi|163784029|ref|ZP_02178987.1| folylpolyglutamate synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880701|gb|EDP74247.1| folylpolyglutamate synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 321

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
               ++        P R + +   S    I +D AH  +SL    + I+       II +
Sbjct: 210 DEDKIKKAVSSTYWPARMQIL---SENPLIILDGAHNEDSLIKTYEEIKELFPDKDIITI 266

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEI 432
           F    D++  K   M  I  D +   I T     RS D E I+  I
Sbjct: 267 FSAMKDKNLDK---MINIVKDNSKKVIFTYSGVSRSIDKEYIKNNI 309


>gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 478

 Score = 45.3 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 86/278 (30%), Gaps = 25/278 (8%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            K +             N + +TGT+GK++V   +  I   +GL +   G   T      
Sbjct: 104 LKVIGEINVAWEILKDTNWIGITGTNGKTTVTHLLSHILCDTGLYAPFAGNIGTP----- 158

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
                      L K      ++ +  V  E SS+ ++      +K   G +T    DH++
Sbjct: 159 -----------LCKYAYSKKTEKIDWVVAELSSYQIEIS--PEVKPNIGIWTTFTEDHLE 205

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
            H+T + YFN   +   E            +       + R            +      
Sbjct: 206 RHKTLENYFN-IKKSLLEKSDFRIYNYDDKNLRNHYSSLSRGVWITTSFDKSNFIQCDYW 264

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +     I  + +    +E      +  L       N L+       +G+    + + L  
Sbjct: 265 IDDQAFIVERGKKLFKLEHFSLKGMHNL------QNLLLVIAAARKVGLSGKEIKDSLSN 318

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
              +P R E +  N     I    A   +S    + +I
Sbjct: 319 YKQLPHRMETIYKNDDLEIINDSKATNFDSSIAGISSI 356


>gi|257415612|ref|ZP_05592606.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis AR01/DG]
 gi|257157440|gb|EEU87400.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ARO1/DG]
          Length = 456

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 23/279 (8%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L    ++         TN+   H+DYH +++ Y  AK  + + +         
Sbjct: 168 MELSSFQL--MGIETFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMT-------- 217

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A+D       +       +  +              A   + ++  + E         +
Sbjct: 218 -AEDTLILNWNQVELQTLAKTTAANVLPFSTKEAVEGAYLLEGKLYFNEEYIMPADELGI 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   + NAL A  +     + +  + + L     VP R +FVG   +        A   
Sbjct: 277 PGSHNIENALAAICVAKLKNVSNVQIRQTLTNFSGVPHRTQFVGEVQQRRFYNDSKATNI 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            + EM L         + +++   G DR      ++  +    A +          E  E
Sbjct: 337 LATEMALSGF----DNQKLLLLAGGLDRGNSFDELVPALLGLKAIVLF-------GETKE 385

Query: 427 KIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           K+        I   +   N   A+  A +   K D +++
Sbjct: 386 KLAEAAKKANIETILFAENVQTAVTIAFDYSGKDDTILL 424


>gi|282856768|ref|ZP_06266029.1| tetrahydrofolate synthase [Pyramidobacter piscolens W5455]
 gi|282585391|gb|EFB90698.1| tetrahydrofolate synthase [Pyramidobacter piscolens W5455]
          Length = 434

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 12/156 (7%)

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A  +        A  +E        PGR E +        + +D AH  +    ++++
Sbjct: 268 LRALEIISDKLPCDAAAMEKGLAEVSWPGRMEVMHR---NPDVILDGAHNPHGTAALIRS 324

Query: 376 IRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIV-TDDNPRSEDPEKIRAEII 433
           ++ +   R +  V+    D+D      +   A   A +  V  +  PR E+  +I A   
Sbjct: 325 LKALYGDRPLSFVYTSMADKDYAASLALYARAFPQARLFCVELEGAPRCEN-AEILARTA 383

Query: 434 HGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
              P   E     +   A++ A+ + N    +++ G
Sbjct: 384 AAFPWKREPLAVKDPRTALKNAMALGNP---VILCG 416


>gi|262373760|ref|ZP_06067038.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter junii SH205]
 gi|262311513|gb|EEY92599.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter junii SH205]
          Length = 481

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 9/230 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           ++ +A   TN+  DH+D ++            F   LP    A++  DDA  +E++ R  
Sbjct: 187 LQPMAAIVTNIDADHMDTYEGSFDKLKDTFIQFLHNLPFYGLAVVCGDDANIREILPRVG 246

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAAG 320
                               V     +   T+  + ++        PG   V NAL A G
Sbjct: 247 RPVLTYGFNEDNDV--RAVDVEQDGMRSHFTVLRKDREPLRVTINQPGLHNVLNALAAIG 304

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIR 377
           +    G+    +   LE    V  RF+  G    G    ++  DY H    +E  +K  R
Sbjct: 305 VATDEGVSDGAICRALEGFSGVGRRFQVQGEFEVGEGTVKLVDDYGHHPKEVEATIKAAR 364

Query: 378 TITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSEDP 425
                R +V+        + +        +     D  ++ +  P  E P
Sbjct: 365 ASHPDRRLVMMFQPHRFSRTRDCFDDFVDVLSQ-VDQLLLLEVYPAGEKP 413


>gi|256846972|ref|ZP_05552418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715636|gb|EEU30611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 457

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 63/396 (15%), Positives = 141/396 (35%), Gaps = 43/396 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPIL--VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           +    +     +  I  + P++   V      ++  A   Y     ++++VTG++GK++ 
Sbjct: 68  LADEDFDYVVKNPGIPYDVPLVAAFVKKGTPIITE-AELGYEIFSGHLVSVTGSNGKTTT 126

Query: 130 ASFVQQICQRS-GLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            + +Q++        +   G      +                            ++  E
Sbjct: 127 TTLIQKMLDAGLSHIAKYAGNIGVSFTKT------------------AQELSADDYLVTE 168

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L       +       TN+  +H+DYH+T++ Y NAK+ +       +   + + 
Sbjct: 169 LSSFQLL--GTPDLHPHIAVITNIFANHLDYHKTRENYINAKLNITRNQTKDDYLIMNWD 226

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D + + + +R+         +G      +++        ++V  + + +       L G
Sbjct: 227 RDEWQE-IARRSSATIVPFSRLGKSKDGAYVEDGVIYWRGEKVMPTKDIR-------LIG 278

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL A       G+D+  ++  L     V  R ++V  + +G R Y D   T   
Sbjct: 279 PQNVENALAAIAAAKLSGVDNEAIINVLTTFGGVRHRLQYV-MDYQGRRFYNDSKST--D 335

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
           +E     ++     + +++   G DR      ++           IV       E  +K+
Sbjct: 336 IEATEVALQGFE--QPVILLAGGLDRGYTFERLVPYF-KKHVKALIV-----FGECKDKM 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +      +    E  N + A+  A ++    DV+++
Sbjct: 388 KDAGEQAVLPVYESENAVTAVPEAWKLSEPGDVILL 423


>gi|320325329|gb|EFW81396.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320327686|gb|EFW83694.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330877924|gb|EGH12073.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 434

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 107/374 (28%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY--------LSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHID 218
              ++          +     +   A+    +Q RLD + L           NL      
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADFA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFI 277
              +        +    E +  E   I  A         +       +   +G       
Sbjct: 158 LVTSIGVDHAEYLGNTRESVAFEKAGIFRAGCPALCGDPEPPEPLLAKARELGCPLLMRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +              G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGKESWDWRGVAHGEQVELRGLPLLDLPMQNAALALQAFALLGYPLQTDAVGQV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +    + +G R+ +  D  H  ++ + + + + R    G+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVSWQGKRLNLLLDVGHNPHAAQFLEQCLARQPVVGKRRAVFGLLND 337

Query: 394 RD-QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D +G    +  +  + A   + T  +  +E+       +   +  +        A+   
Sbjct: 338 KDLEGVVAHLVSVIDEWAVAPLPTSRSRPAEELHSALQNLGACVTSYQSV---ALALEAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|237752717|ref|ZP_04583197.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229376206|gb|EEO26297.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 356

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK   +   +  E+     +          +++  +S  ++ G +F+A           I
Sbjct: 1   MKGIQIGVNEIVEIAFGTLLNKPSIS--FFHQICDESSSVRKGDLFIATNKESAQAQKDI 58

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRL 109
            +AI +GA  I+ S   ++ D           + V++  + L       
Sbjct: 59  EEAIEKGAFGILFSGNIAMSDKE------VAWISVEDLEQSLMRILRHY 101


>gi|207723917|ref|YP_002254315.1| bifunctional protein: folylpolyglutamate synthase and dihydrofolate
           synthase [Ralstonia solanacearum MolK2]
 gi|206589124|emb|CAQ36086.1| bifunctional protein: folylpolyglutamate synthase and dihydrofolate
           synthase [Ralstonia solanacearum MolK2]
          Length = 436

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 102/381 (26%), Gaps = 38/381 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD----------NRLTTPSP 167
             V GT+GK S  + ++ I   +G           I    +             L     
Sbjct: 45  FTVGGTNGKGSTCTMLEAILMAAGYKVGCHTSPHLIDFNERARVNGEIATDAMLLPHFEA 104

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQ--------------HRLDGIKLIAGSFTNLG 213
           +  A+                 +   L                 RLD + ++      + 
Sbjct: 105 VERARCSFDEPVSLTYFEFTTLAIMHLFAKSGLDAVILEVGLGGRLDAVNIVDPDCAVIT 164

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +D+         A       +     PA+          V           L     
Sbjct: 165 SVDLDHTAYLGDTREAIGFEKAGIFRPGVPAVCSDPVPPVSLVQHAEAIGADLWLIGRDF 224

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                 ++                  +  L           AL A          +A  +
Sbjct: 225 SFQGTTEQQRQQWGWSGRGRRWSALGYPALRGANQLLNASAALAALESVRDRLPITAQDV 284

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGG 392
                   +PGRF+ +        + +D AH  ++   + +N+  +   R    VFG   
Sbjct: 285 RVGLSRVALPGRFQVLPGRPA---VILDVAHNPHAAAALGQNLENMGFFRYTYAVFGAMQ 341

Query: 393 DRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGI-----PGFIEKGNR 445
           D+D     ++G +   + D   +TD   PR+     +   +   G            G+ 
Sbjct: 342 DKDIAG--VLGHLIDKI-DHWCLTDLPTPRAAGTATLEQALADAGFHPGKDASVSTYGDP 398

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A R A+E   + D +VV G
Sbjct: 399 ATAYRNAMERATEDDRIVVFG 419


>gi|152989246|ref|YP_001347398.1| folylpolyglutamate synthetase [Pseudomonas aeruginosa PA7]
 gi|150964404|gb|ABR86429.1| folylpolyglutamate synthetase [Pseudomonas aeruginosa PA7]
          Length = 429

 Score = 45.3 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 117/392 (29%), Gaps = 41/392 (10%)

Query: 104 LFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
             A RL  G+  + ++ VTGT+GK S  + + ++ +  GLS         +    +  R+
Sbjct: 30  EVARRLGLGRPAKRVVTVTGTNGKGSTCALLAELLREQGLSVGVYNSPHLLRYNER-VRI 88

Query: 163 TTPSPIYLAKALSY-------------LSSQGVTHVSVEASSHGLDQ--------HRLDG 201
                       ++                 G           GL+          RLD 
Sbjct: 89  DGVEASDAQLCEAFAAVEAARGEISLTYFEMGTLAAFWLFERAGLEFAVLEVGLGGRLDA 148

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           + LI      +    +D+        ++       +L    PA+    D     ++++  
Sbjct: 149 VNLIDADLALITSIGLDHADWLGDTRDSVAFEKAGILRAGKPALCGDLDPPQP-LLEQVV 207

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
             G      G          +    +               L  LP           A  
Sbjct: 208 TLGAPFYLRG------RDYDLALADHGWHWRGLAADGQALALHDLPLLDLPMENAALALQ 261

Query: 322 CIAIGIDSALVLEHLEKLHVVP--GRFEFVGTNSRGGRI--YVDYAHTSNSLEMILKNIR 377
             A+           E L      GR +  G +  G      +D  H   + + + + +R
Sbjct: 262 AYALLDLPWQAHGLAEALRRTRVSGRLDRRGLSWNGQPRQLLLDVGHNPQAAQYLAQRLR 321

Query: 378 T-ITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
                GR + VFG   D+D      P+ G +     D A+     PRS    ++ A +I 
Sbjct: 322 AAPPRGRYLAVFGLLADKDLDGVLEPLTGLV----QDWAVAPLPTPRSRPAAELEAALIL 377

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    +   A+       +  DV+++ G
Sbjct: 378 RQVPASSHADIAAALEAQCAKASADDVILLFG 409


>gi|332653273|ref|ZP_08419018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
 gi|332518419|gb|EGJ48022.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
          Length = 460

 Score = 45.3 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 115/372 (30%), Gaps = 45/372 (12%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQD 159
             LS      +   P +++AVTG+ GK++  + + +  + +G + +  G           
Sbjct: 100 AALSSEMEVFFQTCPSHLVAVTGSDGKTTTTTIISEFLKEAGKTVYVGGNIG-------- 151

Query: 160 NRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDY 219
            +   P                  +  +E SS  L               TNL  +H+DY
Sbjct: 152 -KPLLPDVAD---------MDPEDYAVLELSSFQL---MTMEQSPNIAVITNLAPNHLDY 198

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
           H T + Y NAK  +F      +   + Y D+  ++ +   A              + ++L
Sbjct: 199 HHTMEEYTNAKKNIFLHQGEGDRLILNY-DNEVTRSMAAEAVCPVTWFSRKERLEEGVYL 257

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +            +            LPG   + N + A      +  D   V     + 
Sbjct: 258 RD---NAIWLTNEMGSREVLPLSDIQLPGVHNIENYMAAIAAVDGLVPD-KCVRAVARRF 313

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
           H V  R E V               + +     L++       + I++   G D+     
Sbjct: 314 HGVEHRIELVRELDGVKYYNDSIGTSPSRTTACLESF-----NQKIILIAGGYDKGVPFT 368

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE-------KGNRIEAIRTA 452
            +  +I         +T           IR  +    PG+ E         +   A+  A
Sbjct: 369 QLGVEIVG-HVKALFLT-----GNTAGAIRQAVEQ-APGYAESGMILAETEDLAAAVAAA 421

Query: 453 IEMLNKQDVLVV 464
            +     DV+V+
Sbjct: 422 RQAAKPGDVVVL 433


>gi|315122417|ref|YP_004062906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495819|gb|ADR52418.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 468

 Score = 45.3 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 89/274 (32%), Gaps = 28/274 (10%)

Query: 108 RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP 167
           R +       +AVTGT+GKSS    +  I  ++G      G          D        
Sbjct: 106 RRFSTFHSPFIAVTGTNGKSSTVMLISHILNQNGYDVQLGGNIGNPILNLADFS------ 159

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                              +E SS+ +D      I    G   N+  DH+D H T + Y 
Sbjct: 160 -------------SHRFYVIECSSYQIDL--TPTIDPSIGVLLNVSIDHLDRHNTLENY- 203

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
               R+ ++L+ K   A+I  +D   K V      AG    S+                +
Sbjct: 204 ---ARIKKKLVAKSQHAVICMNDDLCKTVASDMATAG---HSMTRISSQPMPSDSDFYID 257

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
              +  S   K    L      + ++N   +  +C+ +G+    +   +   + +  R +
Sbjct: 258 GSHIKCSSTSKTIFALSQEDRRYNMHNVAASIAVCMRLGLKIDEIKRAISSFNGLTHRLQ 317

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
            +    +   I    A   +S+     N + +  
Sbjct: 318 KIAQLGQVIFINDSKATNLHSVMHAFLNEKRVIY 351


>gi|260596513|ref|YP_003209084.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           turicensis z3032]
 gi|260215690|emb|CBA28025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cronobacter
           turicensis z3032]
          Length = 438

 Score = 45.3 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + ++ +   + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSVAAEAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    +                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLEEGREL--------------------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A       +    +  ++ 
Sbjct: 158 ELSSFQLET--TFSLKAAAATILNVTEDHMDRYPLGLQQYRAAK---LRIYENATVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG         ++          +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGIDVGDYHLNRQQGEIWL-------RVRGEKVLNVKEMKLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRFQLAYEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +T D  R     +
Sbjct: 326 STEAALNGL--HLDGTLHLLLGGDG-----KSADFSPLAH------YLTGDRVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVV 464
               +    P   E      EA++     +   D++++
Sbjct: 373 DGDALAALRPEVAERMETMEEAMKVIAGRVTPGDMVLL 410


>gi|315038910|ref|YP_004032478.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1112]
 gi|312277043|gb|ADQ59683.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylovorus
           GRL 1112]
          Length = 437

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +     +   +KK         +    +  +F     L G+  + N+     
Sbjct: 222 IPKYTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNSTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + + L        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIRDGLLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|262043361|ref|ZP_06016489.1| dihydrofolate:folylpolyglutamate synthetase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039313|gb|EEW40456.1| dihydrofolate:folylpolyglutamate synthetase [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 422

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKR 399
           ++PGRF+ +    R   + +D AH  ++   +   ++T+  +GR++ V G   D+D    
Sbjct: 285 MLPGRFQIISDAPR---VILDVAHNPHAAAYLAGRLKTLAKTGRVLAVIGMLHDKDIA-- 339

Query: 400 PIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              G +A      D       + PR    E++   +  G        +  +A R A+   
Sbjct: 340 ---GTLANLAPEVDAWYCAPLEGPRGATAEQLVEHLRCG----TVYSSVAQAWRAAMADA 392

Query: 457 NKQDVLVVAG 466
             +D ++V G
Sbjct: 393 KVEDTVLVCG 402


>gi|238895835|ref|YP_002920571.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238548153|dbj|BAH64504.1| dihydrofolate:folylpolyglutamate synthetase/dihydrofolate
           synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 422

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKR 399
           ++PGRF+ +    R   + +D AH  ++   +   ++T+  +GR++ V G   D+D    
Sbjct: 285 MLPGRFQIISDAPR---VILDVAHNPHAAAYLAGRLKTLAKTGRVLAVIGMLHDKDIA-- 339

Query: 400 PIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              G +A      D       + PR    E++   +  G        +  +A R A+   
Sbjct: 340 ---GTLANLAPEVDAWYCAPLEGPRGATAEQLVEHLRCG----TVYSSVAQAWRAAMADA 392

Query: 457 NKQDVLVVAG 466
             +D ++V G
Sbjct: 393 KVEDTVLVCG 402


>gi|24111536|ref|NP_706046.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           301]
 gi|30061658|ref|NP_835829.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|44888197|sp|Q83MF8|MURC_SHIFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24050295|gb|AAN41753.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30039900|gb|AAP15634.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|281599453|gb|ADA72437.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2002017]
 gi|313646526|gb|EFS10987.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|332762290|gb|EGJ92557.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2747-71]
 gi|332764937|gb|EGJ95165.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-671]
 gi|333022321|gb|EGK41559.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-304]
          Length = 491

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMCVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|299143955|ref|ZP_07037035.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518440|gb|EFI42179.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 438

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 97/282 (34%), Gaps = 21/282 (7%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           ++ +EASS  L+       K I    TN+  DH+D+H     Y NAK ++F+     +  
Sbjct: 149 YIVIEASSFQLEY--TYDFKPIVSVITNVTSDHLDWHGNISNYKNAKYKIFKNQNEDDYT 206

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
              Y D         ++ +    +     +        V       +   S E       
Sbjct: 207 IFNYRDQNL------KSLSFDRDIYYFSLEDSGKLGTFVKEGGIYFRSKDSTEFIMSVND 260

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
             +PG   V N L +  +  ++GI + ++ + +     V  R EFV   +          
Sbjct: 261 IKIPGVHNVENVLASTAIAKSLGIKNEVIKKSISNFMGVEHRIEFVRELNGVKYYNDSKG 320

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
              +S  M +  I      + I++   G D+       M  I L      I+        
Sbjct: 321 TNPDSTIMAINAIE-----KNIILIAGGYDKKADF-SEMLNIGLGKVKKLILLG------ 368

Query: 424 DPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +   I  +I   +        +  +A+  +  + +  DV+++
Sbjct: 369 ETADILQKISKPLGYEIYMVNDLDKAVMLSNSIASSGDVVLL 410


>gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103]
 gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103]
          Length = 438

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 130/398 (32%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    ++  I +V +              +   +I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALCEAADAGIEIVGDIE--------LFCREAQASIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L KA + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGLP-------------ALSLLKAPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--THSLKAAAATILNVTEDHMDRYPLGMQQYRAAK---LRIYENAQVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +  V           + +G          +      ++V  + E           
Sbjct: 213 ADDGMTMPVRGADARCVSFGIDIGDYHLNKQQGSIWLRAKGEKVLNTDEMTLV------- 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  +  L  L     +P RF+ V  +     I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRSTSLSALAAYSGLPHRFQLVHQSRGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E     ++ +     + +   G  +     P+             +  D  R     +
Sbjct: 326 STEA---ALKGLQVNGTLWLLLGGDGKSADFSPL----------ATYLQGDRIRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
               +    P    + +   +A+      +   D++++
Sbjct: 373 DGDALAALRPDVAVRTDTLQQAMEQIARQVQPDDMVLL 410


>gi|152971243|ref|YP_001336352.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956092|gb|ABR78122.1| dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 422

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGKR 399
           ++PGRF+ +    R   + +D AH  ++   +   ++T+  +GR++ V G   D+D    
Sbjct: 285 MLPGRFQIISDAPR---VILDVAHNPHAAAYLAGRLKTLAKTGRVLAVIGMLHDKDIA-- 339

Query: 400 PIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              G +A      D       + PR    E++   +  G        +  +A R A+   
Sbjct: 340 ---GTLANLAPEVDAWYCAPLEGPRGATAEQLVEHLRCG----TVYSSVAQAWRAAMADA 392

Query: 457 NKQDVLVVAG 466
             +D ++V G
Sbjct: 393 KVEDTVLVCG 402


>gi|87310123|ref|ZP_01092255.1| folyl-polyglutamate synthetase [Blastopirellula marina DSM 3645]
 gi|87287113|gb|EAQ79015.1| folyl-polyglutamate synthetase [Blastopirellula marina DSM 3645]
          Length = 470

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E +  +     IYVD AH   S+  +L  +  +   R  +V     D++      +
Sbjct: 325 PGRIERLADSPV---IYVDAAHNDASITALLDVLNELPVNRRRLVLALSSDKE---HREI 378

Query: 403 GKIALDLADIAIVT--DDNPRSEDPEKIRAEIIH---GIPGFI--EKGNRIEAIRTAIEM 455
            K+ L   D    T    NPR+ +P ++ A  +    G    I     +  +A   AI  
Sbjct: 379 LKLLLPHFDEIWFTRYATNPRAVEPAELEALAVKLPTGRRTVIRHIVEDPQQAFAAAIAA 438

Query: 456 LNKQDVLVVAG 466
            ++ D+L VAG
Sbjct: 439 SDENDLLCVAG 449


>gi|325957331|ref|YP_004292743.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           30SC]
 gi|325333896|gb|ADZ07804.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus acidophilus
           30SC]
          Length = 437

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +     +   +KK         +    +  +F     L G+  + N+     
Sbjct: 222 IPKYTYGFNDTDDFQATDIKKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNSTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + + L        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIRDGLLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|281420182|ref|ZP_06251181.1| tetrahydrofolate synthase [Prevotella copri DSM 18205]
 gi|281405677|gb|EFB36357.1| tetrahydrofolate synthase [Prevotella copri DSM 18205]
          Length = 412

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 44/361 (12%), Positives = 95/361 (26%), Gaps = 6/361 (1%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +  +    + + GT+GK S +  +  I Q  G        TS      ++        + 
Sbjct: 41  HPHNQYKCIHIAGTNGKGSSSHTLAAILQSQGYKVGLF--TSPHLVDFRERIRINGEMVS 98

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
               + ++ +       +  S   L                 +    +            
Sbjct: 99  EEYVIDFVENNRKFFEPLHPSFFELTTMMAFQYFAEQKVDFAVIEVGLGGRLDSTNIITP 158

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
            + +   +    +  +       + E           V+    +       K     N  
Sbjct: 159 ILSVITNISFDHTQFLGNTLGEIAGEKAGIIKPKIPVVIGEWNEETQPVFIKKAHEQNSP 218

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI---AIGIDSALVLEHLEKLHVVPGRF 346
                    D +F      + + +  + AA  C+    I I    +    E +  + G  
Sbjct: 219 IHFAHETDADMNFELKGNYQKKNFCTISAAVECLKEEGIEIKDQSIKNGFEHVCELTGLR 278

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                 +       D  H     E +   I ++ +    +VFG   D+D      + +  
Sbjct: 279 GRWEKLNEHPLTICDTGHNLAGWEYLEPQIASVKADTKHIVFGMVDDKDVEHVMELLEKL 338

Query: 407 LDLADIAIVTDDNP-RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              + I   T  +  R+   +K+                  +A  TA     K D + + 
Sbjct: 339 PKESTIFYWTQPSTKRAIPVDKLFGYAQKHGLNGTCYQTIAQAFNTAKANAKKDDFIFIG 398

Query: 466 G 466
           G
Sbjct: 399 G 399


>gi|221196939|ref|ZP_03569986.1| bifunctional protein FolC [Burkholderia multivorans CGD2M]
 gi|221203609|ref|ZP_03576628.1| bifunctional protein FolC [Burkholderia multivorans CGD2]
 gi|221177543|gb|EEE09971.1| bifunctional protein FolC [Burkholderia multivorans CGD2]
 gi|221183493|gb|EEE15893.1| bifunctional protein FolC [Burkholderia multivorans CGD2M]
          Length = 436

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     R
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHAAAVLEQNLGNMGFFPYTYAVFGAMHDKDIDGVLR 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+   E++ A +   G+            +  +A   A
Sbjct: 351 HLKGEI-----DHWCVTDLPLPRAASAEQLEAALRNAGVQDGPDSSVTRYASPADAFSDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|187926155|ref|YP_001892500.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665643|ref|YP_002984002.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727909|gb|ACD29073.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867670|gb|ACS65330.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 886

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 129/375 (34%), Gaps = 30/375 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK+ VA  V Q+ Q SG  +             Q                  L
Sbjct: 489 VGITGTNGKTVVAKLVAQMLQLSGKHTGLGCSDGLYLDRRQVESGARTDRAAWDACHRIL 548

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
            ++ V     E+ S  +    L   +   G  TN G+     D++   +    + +R   
Sbjct: 549 MNRAVEAAVFESDSGMILSQGLPYDRCQVGVVTNFGKPDHLGDFYVEDEDRMVSVLRTQI 608

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVT 292
           +++ K    ++ A DA   E+ +            G            K        +V 
Sbjct: 609 DVVLKTGVGVLNAADARLVEMAELCDGEVIFFALSGDLEAIAAHRAAGKRAVFVRDGKVV 668

Query: 293 ISVEGKD--------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH---- 340
           ++    +            +     FQ+ N L A     A+GI + L+   +        
Sbjct: 669 LATGPTELALADVSAIPLTYDGRVPFQLENVLAAVATGWALGISNDLMRAGIMTFDVGQV 728

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGRF        G  I VD AH +++LE +   +    + R  +VFG G  R      
Sbjct: 729 DVPGRFTL--FQHHGATIVVDDAHNASALEALAAALDNFPAQRRTLVFGAGLQRRDEDLV 786

Query: 401 IMGKIALDLADIAIVTDDNP----RSEDPEKIRAEIIHGIPG-------FIEKGNRIEAI 449
             G +     D  ++ +D       +E   + RA +  G+          +E   R + +
Sbjct: 787 AQGTVIGQTFDRVLLCEDASVKRTDAEFDRQARALLKQGLQAGGRVAEVVVEGAKRRDVV 846

Query: 450 RTAIEMLNKQDVLVV 464
             A+  +   D+LV+
Sbjct: 847 DAALSQVTAGDLLVL 861


>gi|58617101|ref|YP_196300.1| folylpolyglutamate synthase [Ehrlichia ruminantium str. Gardel]
 gi|58416713|emb|CAI27826.1| Folylpolyglutamate synthase [Ehrlichia ruminantium str. Gardel]
          Length = 431

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 118/407 (28%), Gaps = 43/407 (10%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           V+D   K L+   +      P  ++ V GT+GK S  +F++ I   +GL +        +
Sbjct: 19  VLDRIVKLLNNLGNPQKKLPP--VIHVAGTNGKGSTMAFLRYILNAAGLKTHVYTSPHLV 76

Query: 154 SSFAQ----DNRLTTP---SPIYLAKALSYLSSQGVTHVSVEA----------------S 190
               +    D +++       + + +  S          +  A                +
Sbjct: 77  EFNERVIVADKKISDNYLYEALEICREASVGIPVTFFEGTTAAVFLVFSQVDADIVLIET 136

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G      + +  I    T++  +HI+          A+     +       A      
Sbjct: 137 GLGGRLDATNVLDPILTIITSISLEHIEVLGDTVELIAAEKAGIMKKDVTCVIAPQ--SQ 194

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +V +         L  G    F   +    +      T+S           +    
Sbjct: 195 DSIMKVFEYYAMENNIPLYRGGIDWFCEKQDSNILFKNSVDTLSFPLPSLPGKHQVINVG 254

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE------FVGTNSRGGRIYVDYAH 364
               A           ID   +   + + +  P R E            +   +++D AH
Sbjct: 255 NAIAACSILAGKFHYDIDYDNIAHGITQAYW-PARLEKITTGFLHNMIPQCWELFLDGAH 313

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
                 ++   I+    G + V+ G   D+D  +     K  +       V  + PR++ 
Sbjct: 314 NPGGASVLADWIKDSIVGDLYVIVGMTRDKDSVEFLSYLKPYIKFLSTVCVKSE-PRAQT 372

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-----VLVVAG 466
             ++    +      I      +AI     +L   D      +++ G
Sbjct: 373 ANELLQVALSLGMNAIASDTLTDAIS---GILEVGDHTKKSTILICG 416


>gi|269120494|ref|YP_003308671.1| FolC bifunctional protein [Sebaldella termitidis ATCC 33386]
 gi|268614372|gb|ACZ08740.1| FolC bifunctional protein [Sebaldella termitidis ATCC 33386]
          Length = 407

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 70/170 (41%), Gaps = 9/170 (5%)

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           +  + +F   L G+FQ  N L+A      +GID  ++     +  V  GRF+        
Sbjct: 233 KINNKEFRLSLFGKFQGKNFLLAYEALKYLGIDDEVIKRACSE-TVWNGRFQIAAE---N 288

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VFGCGGDRDQGKRPIMGKIALDLADIAI 414
             I +D AH  +S  ++ +++R +   + +V +     D+D      + +     +D A+
Sbjct: 289 PFIILDGAHNKDSAAVLSESLREVFPNKELVYIISILRDKDNE---SILEELAKASDYAV 345

Query: 415 VTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            T   N R +  +++  +          +     A++ A+ +  K  V+ 
Sbjct: 346 FTGINNNRGQSCDEMYNKGKKYFKHSYAENTPESALKKAVSLNKKATVIC 395


>gi|167583955|ref|ZP_02376343.1| FolC bifunctional protein [Burkholderia ubonensis Bu]
          Length = 436

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 18/134 (13%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQGK--R 399
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     R
Sbjct: 294 PGRFQVLPGKPA---IVLDVAHNPHAAAVLAQNLGNMGFFPYTYAVFGAMHDKDIDGVLR 350

Query: 400 PIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGIPG-----FIEKGNRIEAIRTA 452
            + G+I     D   VTD   PR+    ++ A +   G+            +  +A R A
Sbjct: 351 HLKGEI-----DHWCVTDLPLPRAASAGQLEAALRHAGVEDGPDSSVTRHASPADAFRDA 405

Query: 453 IEMLNKQDVLVVAG 466
           ++  ++ D +VV G
Sbjct: 406 LKRASENDRIVVFG 419


>gi|146299571|ref|YP_001194162.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacterium johnsoniae
           UW101]
 gi|189028988|sp|A5FIY4|MURC_FLAJO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146153989|gb|ABQ04843.1| UDP-N-acetylmuramate--alanine ligase [Flavobacterium johnsoniae
           UW101]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 49/163 (30%), Gaps = 5/163 (3%)

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIG 326
                +        V          +    +      F LPG+  + N L+A  +    G
Sbjct: 230 QCAINEDAVYKAYNVRIEDGNYVFDVQTPSEIMKDLRFGLPGKHNLMNGLMAIAMAKTYG 289

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
             +  + + +   + +  RF      S       DYAH    +  + + +R +  GR ++
Sbjct: 290 TPTDAIAKAIASFNGIRRRF-SYQIKSDKLVYIDDYAHHPTEINAVHQAVRELYPGRKVL 348

Query: 387 VFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
                    R +       +      D   + D  P  E P +
Sbjct: 349 AVFQPHLFSRTRDFADGFAESLSQF-DEVFLMDIYPARELPME 390


>gi|18266360|gb|AAL67521.1|AF459915_1 folyl-polyglutamate synthetase [Bacillus licheniformis]
          Length = 163

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGRFE V        +Y+D AH    +E + + I +  +GR I V      +D+  R +
Sbjct: 30  WPGRFEKV---LNKPLVYIDGAHNKEGMERLAETISSHFAGRNIHVC-FSALKDKPYRDM 85

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIE 441
           + KI    A     T  D PR+E  +K+  +       F E
Sbjct: 86  IRKI-ESFASSIHFTSFDFPRAESAQKLFEQSTADYKTFDE 125


>gi|29654217|ref|NP_819909.1| dihydrofolate synthase [Coxiella burnetii RSA 493]
 gi|29541483|gb|AAO90423.1| folylpolyglutamate synthase [Coxiella burnetii RSA 493]
          Length = 416

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 109/375 (29%), Gaps = 29/375 (7%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ V GT+GK SV   ++ I   +G           +    +      P+   L
Sbjct: 33  NNFACPVVTVAGTNGKGSVVKSLESIYLAAGYKVAAYTSPHLLQFNERLRLNGEPATDEL 92

Query: 171 AKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFN 228
                        H  +       L    +   + +      +G           +    
Sbjct: 93  FIEAFKFIEDNRNHQPLSFFEFTTLAIFYICKKQNLDILLLEVGLGGRLDAVNIVEPDVA 152

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  +                +  + +     G          + +HL +      +
Sbjct: 153 VITTIDIDHTDWLGEDRESIGREKAGIIRRHKPVIGGDPNLPNSVYEQVHLLEAPFYQLE 212

Query: 289 QQVTISVEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +        +++ +  P                +  +L+      +    S   L    K
Sbjct: 213 KDFFAVSTKENWQWQGPTQDYQGLPLPSLKIENIATSLMVIHCLQSQLPVSQHSLIAGIK 272

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQ- 396
             V+PGRFE          I  D AH   +   + + +R     GR + V G   D+D  
Sbjct: 273 NAVLPGRFE---WIQTPAPIVFDVAHNPQATAYLSEQLRKTDHAGRTLGVVGMLRDKDIP 329

Query: 397 -GKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
              +P++  I    A  L++    T  N      + + +E+   +       +  +A + 
Sbjct: 330 GALKPMLPCIDQWYAGTLSESRGATSAN-----LQNVLSELQ--VENCYNFDSVADAFKK 382

Query: 452 AIEMLNKQDVLVVAG 466
           A+E    QD +VV G
Sbjct: 383 AVEDCRPQDRIVVFG 397


>gi|240141485|ref|YP_002965965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens AM1]
 gi|240011462|gb|ACS42688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens AM1]
          Length = 455

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 107/328 (32%), Gaps = 39/328 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSA------TIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           + +A   G  A+V++    L             ++  P++   +   F    A+      
Sbjct: 58  LNEADWSGFSALVLAPGVPLTHPEPHWTVGLARQAGIPVIG--DIEIFCRERAAL---AP 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+TGT+GKS+  +    + + +G      G   T     +    T    + L   
Sbjct: 113 NAPFVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGTAILSLEPPAATCVHVVEL--- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS  +D      +K   G   NL  DH+D H T + Y      +
Sbjct: 170 ----------------SSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENY----AAI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E L+     A+I  DD Y   + +R      R+   G+                    +
Sbjct: 208 KERLVAGADLAVIGVDDPYCAAIAERRTGERIRLHVEGHGDAAGDYVGANGTVRGPDGAV 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +   +  L G+  + NA  A    I +G+ SA +   L+    +  R E +    
Sbjct: 268 ---IAEVTGIQALLGDHNLQNAAAAVAAAIRLGLTSAEIAAGLKSFPGLAHRMEPLRRIG 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS 381
               +    A  ++S E  L   R I  
Sbjct: 325 PTLFVNDSKATNADSTEKALLAFRDIHW 352


>gi|184200770|ref|YP_001854977.1| folylpolyglutamate synthase [Kocuria rhizophila DC2201]
 gi|183581000|dbj|BAG29471.1| folylpolyglutamate synthase [Kocuria rhizophila DC2201]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 17/136 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E          + +D AH  + L      +R   T  ++ +V G  GD+D     +
Sbjct: 312 PGRLELARKAPP---VVLDAAHNPHGLVASAAAVREGFTFSKLNLVVGVLGDKDVE--TM 366

Query: 402 MGKIALDLADI---AIVT-DDNPRSEDPEK---IRAEIIHGIPGFIEKGNRIEAIRTAIE 454
           M  +A +  +       T   +PR+  P +   I  ++           +  +A   AI+
Sbjct: 367 MRVLADEYHEFDLELWCTASHSPRAVPPAELAEIAVDMGFDEDAVHVAEHLDDACSAAIQ 426

Query: 455 MLNK----QDVLVVAG 466
                      ++V G
Sbjct: 427 DAAAREQFDGAVLVTG 442


>gi|161831302|ref|YP_001596812.1| FolC bifunctional protein [Coxiella burnetii RSA 331]
 gi|161763169|gb|ABX78811.1| FolC bifunctional protein [Coxiella burnetii RSA 331]
          Length = 416

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 109/375 (29%), Gaps = 29/375 (7%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ V GT+GK SV   ++ I   +G           +    +      P+   L
Sbjct: 33  NNFACPVVTVAGTNGKGSVVKSLESIYLAAGYKVAAYTSPHLLQFNERLRLNGEPATDEL 92

Query: 171 AKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFN 228
                        H  +       L    +   + +      +G           +    
Sbjct: 93  FIEAFKFIEDNRNHQPLSFFEFTTLAIFYICKKQNLDILLLEVGLGGRLDAVNIVEPDVA 152

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  +                +  + +     G          + +HL +      +
Sbjct: 153 VITTIDIDHTDWLGEDRESIGREKAGIIRRHTPVIGGDPNLPNSVYEQVHLLEAPFYQLE 212

Query: 289 QQVTISVEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +        +++ +  P                +  +L+      +    S   L    K
Sbjct: 213 KDFFAVSTKENWQWQGPTQDYQGLPLPSLKIENIATSLMVIHCLQSQLPVSQHSLIAGIK 272

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQ- 396
             V+PGRFE          I  D AH   +   + + +R     GR + V G   D+D  
Sbjct: 273 NAVLPGRFE---WIQTPAPIVFDVAHNPQATAYLSEQLRKTDHAGRTLGVVGMLRDKDIP 329

Query: 397 -GKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
              +P++  I    A  L++    T  N      + + +E+   +       +  +A + 
Sbjct: 330 GALKPMLPCIDQWYAGTLSESRGATSAN-----LQNVLSELQ--VENCYNFDSVADAFKK 382

Query: 452 AIEMLNKQDVLVVAG 466
           A+E    QD +VV G
Sbjct: 383 AVEDCRPQDRIVVFG 397


>gi|256847517|ref|ZP_05552963.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716181|gb|EEU31156.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 436

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 63/218 (28%), Gaps = 11/218 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY +       A    + + + K   A     +     + +  
Sbjct: 163 AYHPDYAIMTNIDFDHPDYFKDIDDVR-ASFEQYGQQVKKGIFAWGDDPN-----LRQLK 216

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +          Q  F     V             + K   F   L GE  V N+L    
Sbjct: 217 VDVPVYYYGTNPQDDFRAENIVRTPAGSTYDAYYHDQKLGTFTIHLYGEHSVLNSLAVVA 276

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D + + + L   + V  RF           I  DYAH  + +   +   R   
Sbjct: 277 VAYMEHVDLSAIQKELADFNGVKRRFSESKLG--DMTIIDDYAHHPSEINATIDAARQKY 334

Query: 381 SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVT 416
             + +VV        R Q      G+     AD   VT
Sbjct: 335 PDKELVVVFQPHTYSRLQAYLKEFGQALSK-ADQTFVT 371


>gi|237805363|ref|ZP_04592067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026470|gb|EGI06525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 47

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 26 RERKINEVSSDSRHIQAGWIFVAIVG 51
          R+  I E++ DSR+++ G +F+A+ G
Sbjct: 22 RDPLIRELTLDSRNVRPGDLFLAVPG 47


>gi|325925330|ref|ZP_08186732.1| folylpolyglutamate synthase/dihydrofolate synthase [Xanthomonas
           perforans 91-118]
 gi|325544208|gb|EGD15589.1| folylpolyglutamate synthase/dihydrofolate synthase [Xanthomonas
           perforans 91-118]
          Length = 432

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 45/392 (11%), Positives = 106/392 (27%), Gaps = 34/392 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++ A         +++ V GT+GK S  +F++ I + +G           +    +  R+
Sbjct: 31  AVAARLQLAAPATHVIVVGGTNGKGSTVAFIEAIGRAAGWKVGAYTSPHLLRYNER-VRI 89

Query: 163 TTPSPIYLAKALSYL----------------------SSQGVTHVSVEASSHGLDQHRLD 200
                       ++                            + + +     GL   RLD
Sbjct: 90  DGEEASDAQLVDAFAAVEAARGDTALTYFEFGTLAALWLFQQSALELAVLEIGLG-GRLD 148

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + ++      +    +D+         A       ++    P ++   D  S  + +  
Sbjct: 149 AVNIVDSDVAVITTVDLDHTDWLGEDREAIGAEKAGIIRAWKPVVLGEIDPPSSVLRRAY 208

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----GEFQVYNAL 316
                 + +           +                       P+P           A 
Sbjct: 209 QLGANAIRAGSDYFFEPIDTRHAESPQSDAPRWRWRDVAVTLELPMPALRAPVQLANAAA 268

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN- 375
             A L                    V GR + +     G ++ +D  H   +   +    
Sbjct: 269 AIAALQALPVEVPDAAWAQGIGNAQVAGRLQRL--EVNGVQVLLDVGHNPQAARALAAAL 326

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-H 434
                +GR   ++    D+D         +A  +   A+   +  R +  + + A +   
Sbjct: 327 GTQAHAGRTYAIYAALADKDVLGVVE--AVAGQIDHWALAGLEGARGQSAQALHARLQGS 384

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    +   A+R  ++  +  D ++V G
Sbjct: 385 AAAQAPCHRDVASAVRAVLDRASPGDRVLVFG 416


>gi|189183580|ref|YP_001937365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189180351|dbj|BAG40131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 472

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 104/369 (28%), Gaps = 61/369 (16%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    + +TGT+GKS+ ++ +  I   +       G         ++N        
Sbjct: 107 YNEYPNRKYIGITGTNGKSTTSTLIHHILTLTNGKFDLGGNIGKAVLSLRNNVEG----- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  LD   +  +KL      N+  DHID + +   Y  
Sbjct: 162 ----------------YVLELSSFQLDL--ITDLKLDIAVLLNITADHIDRYYSFDQYIL 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K ++           I       S       + +  R  +   +     +       + 
Sbjct: 204 SKQKILSLATKNGYALISKECSIISNANYNTLYASKFRNTTCSLELIKKAINTDELNKSI 263

Query: 289 QQVTISVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
              +I+ +             +  +F   L G+    N   A   C  +G +   +   +
Sbjct: 264 ADESINCQSQPTLVKFSSHLPQHINFTSLLLGKHNNQNIAAAFYACKILGRNEYDITSAI 323

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG 391
            +   +P R +++G  +         A  +++    L ++  I        +   V    
Sbjct: 324 NQFQPLPHRMQYIGKKNNIHIYNDSKATNADAASKALLSLSNIYWIAGGVAKEGGVNSIV 383

Query: 392 GD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
               +  K  + G+     A                   AE + G+  F       EA  
Sbjct: 384 NTLYEVKKAYLYGQ--SRYA------------------LAETLKGVVAFSINNTMEEAFN 423

Query: 451 TAIEMLNKQ 459
            AI      
Sbjct: 424 QAIIDAESD 432


>gi|16803645|ref|NP_465130.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           EGD-e]
 gi|224501453|ref|ZP_03669760.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           R2-561]
 gi|24212042|sp|Q8Y6S8|MURC_LISMO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16411034|emb|CAC99683.1| murC [Listeria monocytogenes EGD-e]
          Length = 447

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 97/303 (32%), Gaps = 36/303 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +A+TG+ GK+S    +  +      +S+ IG  +   +   +        +   +   
Sbjct: 102 TSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKDAEY-----FALEACEYQR 156

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +  +   T+  +                      TN+  DH DY ++    FNA   L +
Sbjct: 157 HFLAYKPTYAIM----------------------TNIDWDHPDYFKSVDDVFNAFETLGK 194

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           +       A+    D     + K   +        G + +F     +      +      
Sbjct: 195 Q----VKKAVFALGDDAE--LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHR 248

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           E     F  P  G+  V NAL    LC   G+    V   L+    V  RF         
Sbjct: 249 EEFLSSFEIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVKRRFSIT--EKGN 306

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAI 414
             +  DYAH  + +   +   R     + +V         + +  + G   +L+LAD   
Sbjct: 307 QVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVY 366

Query: 415 VTD 417
           + D
Sbjct: 367 LCD 369


>gi|110637946|ref|YP_678153.1| tetrahydrofolylpolyglutamate synthase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280627|gb|ABG58813.1| tetrahydrofolylpolyglutamate synthase (folylpolyglutamate
           synthetase) [Cytophaga hutchinsonii ATCC 33406]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                S+     +D AH    + + ++ +  +    I +V G   D+D  K   +  +  
Sbjct: 304 RWQIISQKPLTILDAAHNEAGITLSMQQL-QLYHKSIHIVIGMVKDKDIEKVLSLLPV-- 360

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             A       D+PR+    +++              N  +A+R A +     DV+ + G
Sbjct: 361 -QATYYFCQADSPRAMPAAELQTAAAVNGLQGQAITNVNDAVRAARKNAAPDDVIWIGG 418


>gi|255027424|ref|ZP_05299410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J2-003]
          Length = 420

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 92/280 (32%), Gaps = 22/280 (7%)

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
            ++S+E SS  L    ++  K      TN+   H+DYH  +  Y  AK  + +     +S
Sbjct: 163 QYISMELSSFQL--MGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTTDDS 220

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             I + D    K + K+         +    G+  +++    +        + E      
Sbjct: 221 LVINW-DQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIM-------FNDEVIGERD 272

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              LPGE  + N L +  +   +G+ +  ++  LE    V  R +FV             
Sbjct: 273 NILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSK 332

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
           A    + +  LK  +       +V+   G DR      ++           IV       
Sbjct: 333 ATNILATQSALKGFK-----NPVVLLAGGLDRGNSFDELLPFF--KNVKTLIV-----FG 380

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
           E  +KI               N   A+  A       D++
Sbjct: 381 ETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDII 420


>gi|206900799|ref|YP_002250477.1| folylpolyglutamate synthase [Dictyoglomus thermophilum H-6-12]
 gi|206739902|gb|ACI18960.1| folylpolyglutamate synthase [Dictyoglomus thermophilum H-6-12]
          Length = 442

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 57/399 (14%), Positives = 113/399 (28%), Gaps = 40/399 (10%)

Query: 100 KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-- 157
           ++L               +A  GT GK S ++ +  I + +G            S     
Sbjct: 35  RYLLQLMGNPQDNLQAFHIA--GTKGKGSTSAMIFSILKSAGYKVGLYTSPHLQSIRERI 92

Query: 158 --QDNRLTTPSPIYLAKALSYLSSQGVTHV---------------SVEASSHGLDQ---- 196
              +  ++    + L         +   H                 +  S   LD     
Sbjct: 93  ATHEGFISQEEFVDLIDYAKPYIEEAKKHPIFGSPTFFEVLTALAFLYFSMKKLDYVVIE 152

Query: 197 ----HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                RLD   +I    + +     D+                 ++ +    I       
Sbjct: 153 VGLGGRLDATNVINPLISIITPIGFDHMHILGDTLEKIAFEKAGIIKEGKIVISSPQKKE 212

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLPGEFQ 311
           ++EV++R       V            K+      K  +      ++F            
Sbjct: 213 AEEVIERVSRERNAVYYKVDDLFSWRKKEANLDGQKFLLEGRDIKEEFFIPLLGEHQIVN 272

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
              A  A  +          V++   +     GRF+     ++   I VD AH  +S   
Sbjct: 273 AVTAYGAIYVLKNRLNIDNEVVKKGFENVQWRGRFQI---INKNPLIVVDGAHNVDSAMA 329

Query: 372 ILKNIRTI-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLA-DIAIVTDDNPRSEDPEKIR 429
           +   + +     R+ ++ G   D+D  K     KI   L      +   + R+  PE++ 
Sbjct: 330 LKNTLESYVNFDRLFLICGIMKDKDAEK---FLKILDPLVYSYNFIPLPSHRTRTPEELA 386

Query: 430 AEIIHGIPGFIEK--GNRIEAIRTAIEMLNKQDVLVVAG 466
             +    P        N   AI    +  +  D++++ G
Sbjct: 387 NIVKVFRPNAEINIYDNFSSAISFVNKKASPADLILITG 425


>gi|283783875|ref|YP_003363740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
 gi|282947329|emb|CBG86874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
          Length = 438

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 138/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L     +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPVLSAAADAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAGREL--------------------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +      + A       +    S  ++ 
Sbjct: 158 ELSSFQLET--TYSLQAEAATILNVTEDHMDRYPFGLQQYRAAK---LRVYENASVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADARCVSFGVNMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G +     P+ G+          +T D  R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-KSADFSPL-GR---------YLTGDRVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     EA+R     +   D++++
Sbjct: 373 DGAQLAALRPEIAEQTQTMEEAMRLIAPRVKPGDMVLL 410


>gi|212712758|ref|ZP_03320886.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
 gi|212684674|gb|EEB44202.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
          Length = 472

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 131/421 (31%), Gaps = 51/421 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSG 125
           A  +VVS+A S ++          I V    R+   L+      +G      +AV GT G
Sbjct: 64  ASVVVVSTAISAENPEIQAAKELRIPV---IRRAEMLAELMRYRHG------IAVAGTHG 114

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + +  I  ++GL    +     + S     RL +   +      S  S       
Sbjct: 115 KTTTTAMISGIYAQAGLDPTFV-NGGLVKSAGTHARLGSSRYLIAEADESDASFLH---- 169

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +Q            F   LP    A+
Sbjct: 170 ----------------LQPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGRAV 213

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   + ++ +                 I   +         +       +   +  
Sbjct: 214 MCIDDPVIRSLLPKIGRYITTYGFSEDADVRITKYEQKGNQGFFTIA-REGMPELTVVLN 272

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGR 357
            PG     NA  A  +    GID   +L  L +      RF+F+G               
Sbjct: 273 APGRHNALNATAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNYALRNVNGKEGDVM 332

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIV 415
           +  DY H    ++  +K  R     + IV+        R +        +     D+ ++
Sbjct: 333 LVDDYGHHPTEVDATIKAARAGWPDKRIVMVFQPHRYTRTRDLYDDFANVLGQ-VDVLLM 391

Query: 416 TDDNPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     E P        +   I   G    I      +      ++L+  D+++V G G
Sbjct: 392 LEVYSAGEKPVPGADSRSLCRTIRSRGQVDPIFVAEPEQVSHMLAQVLDDNDLILVQGAG 451

Query: 469 H 469
           +
Sbjct: 452 N 452


>gi|331019136|gb|EGH99192.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 434

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 102/373 (27%), Gaps = 21/373 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPARRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY-------------LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              ++                 G            LD   L+          NL    + 
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFERAQLDAVVLEVGLGGRLDAVNLIDSDLA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FI 277
              +        +    E +  E   I  A                 +   +G       
Sbjct: 158 LVTSIGVDHTEYLGDTRESVAFEKAGIFRAGCPALCGDPSPPEPLLAKAHELGCPLLLRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +    +         G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGDDSWDWRGVAHGEQIELNGLPLLDLPMQNAALALQAFALLGYPLQTDAIGQV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +       G ++ +  D  H  ++   + + + R   S +   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVRWHGKQLNLLLDVGHNPHAAHFLQQRLARRPVSCKRFAVFGLLND 337

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           +D     ++  +A  +AD A+      RS   E + + + +         +  +A+    
Sbjct: 338 KDLDG--VVAHLAPVIADWAVTPLSTSRSRPAEDLHSALQNLGARVTSYQSVAQALDAQC 395

Query: 454 EMLNKQDVLVVAG 466
                 D +++ G
Sbjct: 396 AHATPDDEILLFG 408


>gi|329895281|ref|ZP_08270923.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
 gi|328922403|gb|EGG29746.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
          Length = 479

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 129/410 (31%), Gaps = 44/410 (10%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
            S+A +  +       +  I  V    + L+      +G      +AV GT GK++  S 
Sbjct: 81  TSTAVAPDNVEYQAARDARIPTVPRA-QMLAELMRYRHG------IAVAGTHGKTTTTSM 133

Query: 133 VQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           +  +   +G   ++ IG    ++    + +L      +   A +  S     H++   S 
Sbjct: 134 IASVFAAAGLDPTYVIG--GRVNQSGSNAKLG---ASHYLIAEADESDASFLHLTPMVS- 187

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                             TN+  DH+D +             F   LP    A++  DD 
Sbjct: 188 ----------------VVTNIEADHMDTYGGDLQQLRKTFIEFLHNLPFYGSAVLCLDDP 231

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             K ++ + + +             I   K  A         +            PG   
Sbjct: 232 EIKALIPQINRSILTYGQDPDADYCIRSIK-AAGAASDFQLQTPNHGVLALRVNSPGLHN 290

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR---GGRIYVDYAHTSNS 368
           V NA   A + +  G+  A V + L     V  RFE +G          +  DY H    
Sbjct: 291 VLNAAATAAVALDEGLPIAAVQDGLANFAGVGRRFEQLGRLQHARGQAVLVDDYGHHPTE 350

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE--- 423
           +E  L +   +     +V+        R +       ++     D+ I+ D     E   
Sbjct: 351 VEATLNSAAQVWPESRVVMVYQPHRFTRTRDLYDDFVRVLSR-CDVLILLDVYAAGEAEI 409

Query: 424 ---DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
              D + +   I   G+   I      E       +L   DVL+  G G+
Sbjct: 410 PGADSKSLARSIRQRGLVDPIYAAGIDEVPELLASILAADDVLITQGAGN 459


>gi|317493281|ref|ZP_07951703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918674|gb|EFV40011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 438

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 68/404 (16%), Positives = 133/404 (32%), Gaps = 66/404 (16%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + ++ +   + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALASPALSVAAEAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G S    G     +                                +
Sbjct: 118 TVTTLVGEMAKSAGWSVGVGGNIGLPALMLLKQE--------------------CDLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TTSLRAAAATILNVTEDHMDRYPLGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           +DDA +  +             VG         ++      +++  + E K         
Sbjct: 213 SDDALTMPIRGADSRCVSFGADVGDYHLNRQQGEIWLRVRGEKILNTREMKI-------T 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+GI  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GKHNFTNALAALALADAVGIPRASSLKALTTFTGLAHRFQLSLDHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR------ 421
           S E  L  +     G + ++ G  G     K      +A        +  DN R      
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSSLAQ------YLQGDNVRLYCFGR 372

Query: 422 -SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             E    +R E+        +     +A+R     +   D++++
Sbjct: 373 DGEQLAALRPEVAE------QTETMEQAMRIIATRVKSGDMVLL 410


>gi|304310316|ref|YP_003809914.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium HdN1]
 gi|301796049|emb|CBL44253.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium HdN1]
          Length = 442

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 97/349 (27%), Gaps = 38/349 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GAE I+VS   S             I VV +              +    ILA+TG++ K
Sbjct: 61  GAEEIIVSPGISTATAPLQKAVARGIPVVGDIE--------LFCREVKTPILAITGSNAK 112

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           S+V + + ++ + SG S    G                              +Q      
Sbjct: 113 STVTTLMGEMVKGSGRSVVVGGNIGVPVLDV------------------LQEAQSAEFCV 154

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+      ++    +  N+  DH+D + + + Y  AK R++       + A  
Sbjct: 155 LELSSFQLET--TYSLRAHVATILNISPDHLDRYPSMKEYTAAKHRIYRNARHTVANADD 212

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            A   +                +  +  +        A          +   +       
Sbjct: 213 SATLPHPMFTEHDWRFTTRSPSARTFGLQ----LNESASWLGVANEALMPVSELRIKGRH 268

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                +    + +   + +      + E     H      E  G                
Sbjct: 269 NQANALAALAIGSAAGLEMQHMLNTLREFRGLAHRCEWIRERDGVQWYN----DSKGTNV 324

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            +    +  I +  SG+  +V   GGD        + K        A++
Sbjct: 325 GATVAAIDGIGSEISGK--IVLVAGGDGKGADFVELQKPVEKYVKAAVL 371


>gi|269302694|gb|ACZ32794.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 809

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 82/248 (33%), Gaps = 10/248 (4%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L      A   TN+  +H++ +          ++ F   +   +      D       + 
Sbjct: 166 LKHYTPHAVVITNIDNEHLNNYAGNLDNLVQVIQDFSRKVTDLNKVFYNGDCP-----IL 220

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           + +  G            I      A  +    T   + +  D    LPG+    NA  A
Sbjct: 221 KGNVQGISYGYSPECQLHIVSYNQKAWQSHFSFTFLGQ-EYQDIELNLPGQHNAANAAAA 279

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+ +  GID  ++ + L+K   V  R E     S       DYAH    +   L+++R 
Sbjct: 280 CGVALTFGIDINIIRKALKKFSGVHRRLER-KNISESFLFLEDYAHHPVEVAHTLRSVRD 338

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHG 435
            +   R+I +F         +       A   AD  I+TD     E P +  I +++   
Sbjct: 339 AVGLRRVIAIFQPHRFSRLEECLQTFPKAFQEADEVILTDVYSAGESPRESIILSDLAEQ 398

Query: 436 IPGFIEKG 443
           I       
Sbjct: 399 IRKSSYVH 406


>gi|268319719|ref|YP_003293375.1| hypothetical protein FI9785_1248 [Lactobacillus johnsonii FI9785]
 gi|262398094|emb|CAX67108.1| folC [Lactobacillus johnsonii FI9785]
          Length = 421

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 11/121 (9%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                     I VD AH   ++E +L  +R    G+I V+ G   D+D      +G +  
Sbjct: 291 RYDVIQTSPEIIVDGAHNLQAMENLLNLVRKKKKGQIYVLLGMMKDKD------LGPVTK 344

Query: 408 DLAD-IAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              D    +T  D PR+   E    E       F  K N  EA  +    L   D+L+V 
Sbjct: 345 LFKDEKVTLTRIDYPRAARLEDFPKEAQK---EFEYKENFEEAYTSLKNKLQADDMLLVT 401

Query: 466 G 466
           G
Sbjct: 402 G 402


>gi|227889742|ref|ZP_04007547.1| possible tetrahydrofolate synthase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849606|gb|EEJ59692.1| possible tetrahydrofolate synthase [Lactobacillus johnsonii ATCC
           33200]
          Length = 421

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 11/121 (9%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                     I VD AH   ++E +L  +R    G+I V+ G   D+D      +G +  
Sbjct: 291 RYDVIQTSPEIIVDGAHNLQAMENLLNLVRKKKKGQIYVLLGMMKDKD------LGPVTK 344

Query: 408 DLAD-IAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
              D    +T  D PR+   E    E       F  K N  EA  +    L   D+L+V 
Sbjct: 345 LFKDEKVTLTRIDYPRAARLEDFPKEAQK---EFEYKENFEEAYTSLKNKLQADDMLLVT 401

Query: 466 G 466
           G
Sbjct: 402 G 402


>gi|309806265|ref|ZP_07700278.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167249|gb|EFO69415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
          Length = 460

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 48/391 (12%), Positives = 114/391 (29%), Gaps = 42/391 (10%)

Query: 74  SSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFV 133
           +     ++       +  + ++      L++             + VTG++GK++     
Sbjct: 80  NPGIPYENPLVQAAKDANVSIITEPEVALAV--------SSAPYVCVTGSNGKTTTVMLT 131

Query: 134 QQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
           Q+I +               +    +  +     +  A A   L  +  +   +  ++  
Sbjct: 132 QRIMENHLHK------LGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK 185

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
                   +  I   + N+  D   YH+T + Y  AK+R+ +     +     +      
Sbjct: 186 ------PKVAAIVDIYNNVHID---YHKTFENYVAAKLRITQNQDKSDYFIANFDQKNIL 236

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY 313
           ++ +               Q  +        I  +   + +           +PG     
Sbjct: 237 EQELSITKANVVTFSEESTQADY-------YIGEQYLESQADHEIMKISDIKIPGRHNQQ 289

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+LVA  +   +G     +   L        R ++V T +         +    +  + +
Sbjct: 290 NSLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI- 432
            +          V+   G DR       +  +        ++       E    +     
Sbjct: 350 PSFSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADAAR 398

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
             GI   +      EA+  A ++ N  DVL+
Sbjct: 399 KAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|288934228|ref|YP_003438287.1| FolC bifunctional protein [Klebsiella variicola At-22]
 gi|288888957|gb|ADC57275.1| FolC bifunctional protein [Klebsiella variicola At-22]
          Length = 422

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 55/373 (14%), Positives = 108/373 (28%), Gaps = 34/373 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  V GT+GK +    ++ +   +G           +    +           L 
Sbjct: 46  KPAPFVFTVAGTNGKGTTCRTLETVLMAAGYKVGVYSSPHLVRYTERVRIQGA----ELP 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A    S   +     + S    +   L  + L   +  ++    +       A      
Sbjct: 102 EAAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDA 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--------C 283
            +                D  S    K       +   VG       +  V         
Sbjct: 162 DVAVVTSIALDHTDWLGPDRESIGREKAGIFRAGKPAVVGEPDMPHTIADVASEKGALLQ 221

Query: 284 AIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                    +  +   F          PLP       A   A L  +       +L    
Sbjct: 222 RRGVDWCYEVEDDTWSFRDAAGALSRLPLPQVPLPNAATAVAALRASGLAVDDAILRDGI 281

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
           +  ++PGRF+ +    R   + +D AH  ++   +   ++T+  +GR++ V G   D+D 
Sbjct: 282 RDAMLPGRFQIISDAPR---VILDVAHNPHAAAYLAGRLKTLAKTGRVLAVIGMLHDKDI 338

Query: 397 GKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 G +A      D       + PR    E++   +  G        +  +A   A+
Sbjct: 339 A-----GTLANLAPEVDAWYCAPLEGPRGATAEQLLEHLRGG----TVYTSVAQAWHAAM 389

Query: 454 EMLNKQDVLVVAG 466
                +D ++V G
Sbjct: 390 ADAKVEDTVLVCG 402


>gi|33240888|ref|NP_875830.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|60390538|sp|Q7VAM1|MURD_PROMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33238417|gb|AAQ00483.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 470

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 124/390 (31%), Gaps = 44/390 (11%)

Query: 69  EAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
             ++VS        +        I+V                       + +TGT+GK++
Sbjct: 78  ALVIVSPGIPWDHPTLNQLRKRGIIVESEINLAWRAL-------KNTPWVGITGTNGKTT 130

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           V   +  +   S + S   G                     +A AL   +      + +E
Sbjct: 131 VTHMLNHVLNNSFIESTIGGNVGKA-------------ATEIALALRKSTKHKPKWLIME 177

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS+ ++      I    G +T L  DH++ H + + YF  K  L      +   A    
Sbjct: 178 LSSYQIET--APEISPEIGIWTTLTPDHLERHGSLENYFAIKRTLIANSSIRIYNA---- 231

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF-PLP 307
                 + + +      + L V  Q    ++ ++    +   + I    + F      LP
Sbjct: 232 ----DDKYLSKNRLNLPKGLWVSAQKYNSNINQLDFWISSNGMVIEQGNELFHSSALQLP 287

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+  + N L+ +     IG+    +   L     +  R E V             A   +
Sbjct: 288 GDHNLQNLLLVSAAARKIGLSGMAIENALISFAGITHRLEKVDKIIDIDIFNDSKATNFD 347

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E+ LK          +++   G  +       + +I   +  + ++       E   K
Sbjct: 348 SAEIGLKATSA-----PVILIAGGLSKQGIYLDWINQIKEKVCAVILI------GESRVK 396

Query: 428 IRAEIIH-GIPGFIEK-GNRIEAIRTAIEM 455
           ++  I   G  G I       +A+  AI++
Sbjct: 397 LQHLIKSHGFRGEIVCYEKLDKAVDKAIKL 426


>gi|311896023|dbj|BAJ28431.1| putative folylpolyglutamate synthase [Kitasatospora setae KM-6054]
          Length = 463

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 14/132 (10%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDRDQGKRPI 401
           PGR E V  +     + +D AH  +  +     I       +++ V    GD+D      
Sbjct: 323 PGRLEVVRRSPT---VILDAAHNPHGAQAAAAAIGEAFGFTKLVGVIATSGDKDVTG--- 376

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH---GIPGFIEKGNRIEAIRTAIEMLNK 458
           + ++   +    ++T ++     P    A I     G      +    +AI  A+ +  +
Sbjct: 377 LLEVFEPILAEVVITQNSTHRAMPVDRLAAIAVEVFGEDRVQVEPRLDDAIDAAVTLAEE 436

Query: 459 QDV----LVVAG 466
           +D+    ++V G
Sbjct: 437 EDLGGAGVLVTG 448


>gi|260770966|ref|ZP_05879895.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
 gi|260614203|gb|EEX39393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 112/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +   +LAV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 YDRWVLAVSGTHGKTTTSSMLAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    DA   +V++R   +         + +   + K       Q  
Sbjct: 205 HHLVRTVPGNGRILAPRQDAALADVLRRGCWSETEFSGEQGEWQAEKICK----DGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L GE  V NAL+       +G+   L  E L        R E  GT
Sbjct: 261 VLHQGERVGTVTWDLVGEHNVNNALMTIAAARHVGVTPDLACEALGSFINTKRRLELKGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
            + G  +Y D+AH   ++E+ L+ +R  +   +II V          G        +L  
Sbjct: 321 EN-GVTVYDDFAHHPTAIELTLEGLRNKVGDRKIIAVLEPRSATMKLGVHKETLAASLAA 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     ++           +   E +    +     D ++V
Sbjct: 380 ADSVYLFQ-------PSNIPWAVQDVADQCSQPAHVSDNMAEFVAQICQEAQPGDQILV 431


>gi|332300742|ref|YP_004442663.1| FolC bifunctional protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177805|gb|AEE13495.1| FolC bifunctional protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 441

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T S    I  D AH    + ++   +   +   + ++ G   D+D      +   + 
Sbjct: 301 RWETLSTDPHIVCDTAHNPAGIAVVAHQLEEESYDHLYIIIGMSADKDIDTNLALLPSSA 360

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   T  + R+   E+++              +  EA+R  + + N  D++ V G
Sbjct: 361 RYY---FCTTASQRTLPAEELQQRAEAIGLRGRAYPSVEEALREVVALANAGDLIFVGG 416


>gi|313886931|ref|ZP_07820634.1| bifunctional protein FolC [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923628|gb|EFR34434.1| bifunctional protein FolC [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 441

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 3/119 (2%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
              T S    I  D AH    + ++   +   +   + ++ G   D+D      +   + 
Sbjct: 301 RWETLSTDPHIVCDTAHNPAGIAVVAHQLEEESYDHLYIIIGMSADKDIDTNLALLPSSA 360

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   T  + R+   E+++              +  EA+R  + + N  D++ V G
Sbjct: 361 RYY---FCTTASQRTLPAEELQQRAEAIGLRGRAYPSVEEALREVVALANAGDLIFVGG 416


>gi|312871945|ref|ZP_07732027.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092522|gb|EFQ50884.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 460

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 113/393 (28%), Gaps = 52/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 IC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G      S                     L +     + VE SS
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVV------------------LKANANDLLVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L          +A         HIDYH+T + Y  AK+R+ +     +     +    
Sbjct: 176 FQL-MGVNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ +               Q  +        I  +   + +           +PG   
Sbjct: 235 ILEQELSLTKAHVVTFSEESNQADY-------YIGEQYLESQADHEIMKISDIKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +         +    +  +
Sbjct: 288 QQNSLVAIAISKLMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + +          V+   G DR       +  +        ++       E    +   
Sbjct: 348 AIPSFSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADA 396

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A ++ N  DVL+
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|167770370|ref|ZP_02442423.1| hypothetical protein ANACOL_01713 [Anaerotruncus colihominis DSM
           17241]
 gi|167667692|gb|EDS11822.1| hypothetical protein ANACOL_01713 [Anaerotruncus colihominis DSM
           17241]
          Length = 400

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A   +   +     +        VP RFE V    R   + +D AH   +   +   +  
Sbjct: 241 ALPALLGRLPDERTIAKALAGVHVPARFEIV---QRNPLVIIDGAHNPQAAGALADALTL 297

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +    +  V G   D+D     ++  +A  LA +  VT ++PR+    ++          
Sbjct: 298 LGDQPVTGVIGVLADKDSTG--LLRALAPRLARVLCVTPESPRALGAHELAVRADAVGLR 355

Query: 439 FIEKGNRIEAIRTAIEMLNK-QDVLVVAG 466
                +  EA+  A  + +     +VV G
Sbjct: 356 ASAAHSIDEALELAQAVASAQGGAIVVCG 384


>gi|323466063|gb|ADX69750.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           H10]
          Length = 437

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +     +   +KK         +    +  +F     L G+  + N+     
Sbjct: 222 IPKYTYGFNDTDDFQATEIKKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNSTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + + L        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIRDGLLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRGVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|299772109|ref|YP_003734135.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. DR1]
 gi|298702197|gb|ADI92762.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. DR1]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 87/282 (30%), Gaps = 17/282 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            NL  DH D      A    +       +P E   I    
Sbjct: 164 SAFFDKRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQK-QFHHLVRTIPSEGRIIAPIT 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           + +  EV++          S+    K     ++ +I       +       +  + + G+
Sbjct: 223 ETHIDEVLEMGCWTPVIRTSLEANEKAALSAELISIDGSHFKVLENGNAAGEVKWTMTGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL        +G+      E L     V  R E +G    G  +Y D+AH   ++
Sbjct: 283 HSVANALATIAAAQHVGVTLETACEALSNFGGVKRRMELLG-TVNGIEVYDDFAHHPTAI 341

Query: 370 EMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +  L   R  +   R+  +      R    R  MG        +  LAD  I     P  
Sbjct: 342 DTTLDGARKRLGERRLWAIIEP---RSNTMR--MGSHKDGLAHSARLADDVI--WYQPEG 394

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            D   ++  I           +  E I   +    + D +V+
Sbjct: 395 LDW-DLQPVIAAASNRAQVSRSLDEIIERIVNEAGEGDAVVI 435


>gi|254303964|ref|ZP_04971322.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148324156|gb|EDK89406.1| UDP-N-acetylmuramate--L-alanine ligase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 468

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 124/392 (31%), Gaps = 41/392 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ S+A    +   +   N  I     T        ++L  +  E  +AV GT G
Sbjct: 67  KGADYVIASTAIKETNPELSYAKNNGI-----TLLKRGELLAKLLNR--ETGIAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSE--------YFIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H        + +        +    +
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNIKKSFIEFICHTQKEAIICM 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              +   +   +    +     +       F    ++          ++ E    +F   
Sbjct: 217 DCENLKEAVTRLPEGKSVTTYSIKDENASIFAKNIRIEDRKTIFDFYVNKEL-IGEFSLN 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---------VGTNSRGG 356
           +PGE  + N+L    L +  G+    + E L K      R++           G  ++  
Sbjct: 276 IPGEHNISNSLPVIYLALKFGVSKEEIQEALSKFKGSKRRYDVLFDKELENGYGNKTKRV 335

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           RI  DYAH    ++  LK I++I + R++ +F               K A    D  I+ 
Sbjct: 336 RIVDDYAHHPTEIKATLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFKDVDKVILL 395

Query: 417 DDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIE 447
                 E  E  I +EI+             E
Sbjct: 396 PIYAAGEKNEFNISSEILKEHINHNNIEVMTE 427


>gi|54297666|ref|YP_124035.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
 gi|53751451|emb|CAH12869.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
          Length = 455

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 133/368 (36%), Gaps = 35/368 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNR 161
              A  +  K+   ++AV GT GK++  S +  I  ++G+   F IG  S+  + +    
Sbjct: 95  QWLAENILSKY--QVIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSDFNTSACLG 152

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 I   +  S    +                      +       NL  DH D + 
Sbjct: 153 KGRWFVIEADEYDSAFFDKRPKF---------------MHYRPNIAVLNNLEFDHADIYP 197

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              A    +       +PK   AI   DD    EV+ R      R+ ++   G+   + +
Sbjct: 198 DLAAIQQ-QFHYLLRTIPKSGVAIKPRDDKALNEVLSRGQF--SRIETLALSGEAEWVAE 254

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      Q   +   G   +  +PL G+F V N L A       G++  +  + LE+   
Sbjct: 255 LIDDSGSQFKILHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSP 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           V  R E   +N  G  +Y D+AH   ++   +  ++   SGR   +F          R  
Sbjct: 315 VKRRLEV-RSNRHGVTVYDDFAHHPTAITKTIDALKR--SGRHQRIFAVMEFASYTMRTG 371

Query: 402 M--GKIALDLA--DIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEML 456
           +  G++A  LA  D A V       E  +    + +      +    N  E ++  I+ +
Sbjct: 372 VHAGEMAHALAPVDGAYV------LEPQDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTV 425

Query: 457 NKQDVLVV 464
            + D ++V
Sbjct: 426 REGDAVLV 433


>gi|329955857|ref|ZP_08296660.1| protein FolC [Bacteroides clarus YIT 12056]
 gi|328525237|gb|EGF52287.1| protein FolC [Bacteroides clarus YIT 12056]
          Length = 402

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 95/363 (26%), Gaps = 10/363 (2%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSP 167
           +       + V GT+GK S +  +  I Q +G           +    +        P  
Sbjct: 26  HPHRSFRTIHVAGTNGKGSCSHTLAAILQEAGYRVGLYTSPHLVDFRERIRINGQPIPEE 85

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
             +             H S    +  +        K+ A          +D         
Sbjct: 86  YVVRFVEKERDFFEPLHPSFFELTTAMAFRYFADEKVDAAVIEVGLGGRLDCTNIIHPDL 145

Query: 228 NAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHN 287
                +  +        +       +  +                       ++  A   
Sbjct: 146 CLITNISFDHTQFLGDTLAKIAGEKAGIIKAGIPVVIGETTPETKPVFLQKAEEEKAPVI 205

Query: 288 KQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA---IGIDSALVLEHLEKLHVVPG 344
             + T+  +            + +    ++ A   +      ID   +      +  + G
Sbjct: 206 FAEDTMIQDYPGMKTELQGLYQIKNTRTILTALPLLQEAGYRIDEQSIRSGFAHVCELTG 265

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMG 403
                        +  D  H    +  I++ ++  T  ++ +V G   D+D      ++ 
Sbjct: 266 LMGRWQKLQDAPTLICDTGHNVGGISYIVEQLKQQTYRQLHIVIGMVNDKDISGVLALLP 325

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           K A      A V    P  E+   + A+   G+ G     +   A+  A E    +D + 
Sbjct: 326 KDAAYYFTKACVKRALP-EEELRALAAQ--AGLRGSCY-PDVPAAVTAAQEKSYPEDFIF 381

Query: 464 VAG 466
           V G
Sbjct: 382 VGG 384


>gi|296113634|ref|YP_003627572.1| bifunctional protein FolC [Moraxella catarrhalis RH4]
 gi|295921328|gb|ADG61679.1| bifunctional protein FolC [Moraxella catarrhalis RH4]
 gi|326574261|gb|EGE24209.1| bifunctional protein FolC [Moraxella catarrhalis 101P30B1]
          Length = 442

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 107/389 (27%), Gaps = 56/389 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---------- 167
             V GT+GK S    V  IC+  GL +        +S   +                   
Sbjct: 53  FTVAGTNGKGSTTKTVAAICEACGLKTALYQSPHLVSFTERICINGNEISESDLVAAFEA 112

Query: 168 ---------IYLAKALSYLSSQGVTHVSVEASSHGLDQH------RLDGIKLIAGSFTNL 212
                    + L+       +        +     L+         ++ I       TN+
Sbjct: 113 VENARVAKNVTLSFFEMTTLAAFWHFNQKKCDVWVLEIGLGGRLDVVNIINPDVAVITNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G DH+D+          +                         ++               
Sbjct: 173 GIDHVDWLGDDIERIGQEKAGIIR--------------ENIPVILGARQLPNSVHELANR 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K +H   V   + +Q  T            P P           A +  +        
Sbjct: 219 LTKHVHQLGVNYDYMEQDETWIFSNAALTIQLPKPKLSLQNAVNAVAAVLESGIKIHLDS 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--------RI 384
           +        + GRF+    N        D AH S+ +   L                 ++
Sbjct: 279 VIDGLHQVQLAGRFDQRIIN--DRHWIFDVAHNSHGISFFLAQWADEWHKHKKIYPDAKL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD-----LADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            V+F   GD+D      + K ALD     + D ++   ++PR+ D + +   +   I   
Sbjct: 337 KVIFSMLGDKDVDAVLEVIKAALDDKKISIHDWSVAAINHPRAMDLQTLLGHVHTHIQPS 396

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 +  +A ++     + QD++VV G
Sbjct: 397 NLKIYQDLAQAAQSVSTDASTQDLIVVFG 425


>gi|284990118|ref|YP_003408672.1| FolC bifunctional protein [Geodermatophilus obscurus DSM 43160]
 gi|284063363|gb|ADB74301.1| FolC bifunctional protein [Geodermatophilus obscurus DSM 43160]
          Length = 447

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 17/135 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+     + VD AH    +   +  IR      R++ V G    +D      
Sbjct: 302 PGRLERVRTSPT---VLVDAAHNPAGMAATVDAIRESFDFTRLVGVVGVVHGKDV---AG 355

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEMLN- 457
           M     ++    +VT + +PR+   +++ A  +   G           EA+  AIE+   
Sbjct: 356 MLTALEEVCAELVVTQNSSPRAMPADELGALAVDVFGADRVSVSPRLTEALTEAIELAEA 415

Query: 458 -KQDV-----LVVAG 466
              D      ++V G
Sbjct: 416 GPDDALGGSGVLVTG 430


>gi|51599068|ref|YP_073256.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia garinii PBi]
 gi|59798192|sp|Q65ZV7|MURC_BORGA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51573639|gb|AAU07664.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBi]
          Length = 468

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 128/415 (30%), Gaps = 44/415 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY        + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYDKDGLQVLLEAKELNIPILSYSEVLGELSRKHYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +F+  +  + GL+   I  +S                  +            +      
Sbjct: 129 TAFLGILFDKLGLNPNVIVGSSVKDFGDNSAIAGISDIFIVETCEYKKHFLYFS------ 182

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  +H+D+ +  +A  +A    +   L K    II +D
Sbjct: 183 --------------PNMLILTNVDYEHVDFFKNYEALEDA-FLQYINNLKKNGILIINSD 227

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQG-KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           D    ++  + +     + S G +      +  +   +     +                
Sbjct: 228 DKNLLKIKSQINREDINIFSFGSRDLSNFQISNIVVKNEYFCFSFLGLYNIELRTVLFHN 287

Query: 309 EFQVYNALVAAGLCIAIG----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                 AL+A  L +        D   V++ + K +    R   +    +G     DYAH
Sbjct: 288 ILNFSAALLALNLFLESNGKSIFDFEEVVKRVAKNYSGIKRRSELIKEKKGVIYMDDYAH 347

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD---- 418
               +   L  I+     + I++        R +       ++   +AD+ I+ +     
Sbjct: 348 HPREIRATLFGIKNFYKNKRIILDFMPHTFTRTKEFFDDFVEVLN-IADVLILHNIYLSN 406

Query: 419 ----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 407 RENFNP-DELSFKLFLNIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|312129679|ref|YP_003997019.1| folc bifunctional protein [Leadbetterella byssophila DSM 17132]
 gi|311906225|gb|ADQ16666.1| FolC bifunctional protein [Leadbetterella byssophila DSM 17132]
          Length = 428

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 5/120 (4%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
                SR   I  D  H   + ++ L+ I     G +  + G   D+D  K   + K   
Sbjct: 302 RWQILSRKPLIICDTGHNDQAFQITLQRISKENYGHLYYILGFVRDKDISK---ICKYIP 358

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG-NRIEAIRTAIEMLNKQDVLVVAG 466
             A + + T ++ R+   E+   ++   +P  I    N  EA+        + D++ V G
Sbjct: 359 ADAKLLLCTFNSFRARTVEE-LEDLRKILPNEISIHKNVNEALAKVRREAKENDIVYVGG 417


>gi|283456401|ref|YP_003360965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bifidobacterium dentium Bd1]
 gi|283103035|gb|ADB10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bifidobacterium dentium Bd1]
          Length = 281

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVS--SDSRHIQAGWIFVAIVGNKEDGHL 58
           M L  L  +          + P    E  +  ++   DS  I+ G +FV   G   D   
Sbjct: 1   MTLGHLASQY------GFDLDPSFASEVTVTSLADDIDS--IRPGALFV--PGADVDVRQ 50

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            + QA   GA   +V  A   +          P++  + T + L   A  + G   
Sbjct: 51  LV-QAQQLGAYGAIVPHAMRGE----IQDLQIPLIYAEPTAQQLGKLACDIAGAPS 101


>gi|171742512|ref|ZP_02918319.1| hypothetical protein BIFDEN_01624 [Bifidobacterium dentium ATCC
           27678]
 gi|171278126|gb|EDT45787.1| hypothetical protein BIFDEN_01624 [Bifidobacterium dentium ATCC
           27678]
          Length = 292

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVS--SDSRHIQAGWIFVAIVGNKEDGHL 58
           M L  L  +          + P    E  +  ++   DS  I+ G +FV   G   D   
Sbjct: 12  MTLGHLASQY------GFDLDPSFASEVTVTSLADDIDS--IRPGALFV--PGADVDVRQ 61

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
            + QA   GA   +V  A   +          P++  + T + L   A  + G   
Sbjct: 62  LV-QAQQLGAYGAIVPHAMRGE----IQDLQIPLIYAEPTAQQLGKLACDIAGAPS 112


>gi|170748777|ref|YP_001755037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655299|gb|ACB24354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 454

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 62/324 (19%), Positives = 106/324 (32%), Gaps = 34/324 (10%)

Query: 62  QAIAQGAEAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI 117
           +A   G  A V+S           +S  +  +  + ++ +   F      R         
Sbjct: 60  EADWSGFAAFVLSPGVPLTHPEPHWSVRLARDAGVAIIGDIELFCRE---RRARAPGAPF 116

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           +A+TGT+GKS+  + +  +  + G      G   T               + L    +  
Sbjct: 117 VAITGTNGKSTTTALIAHVLAQGGRDVQMGGNIGTA-------------ILSLEPPAADR 163

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEEL 237
                    +E SS  +D      +    G   N+  DH+D H T + Y      + E L
Sbjct: 164 VH------VIEMSSFQIDL--TPSLDPSVGVLMNITPDHLDRHGTMEQY----AAIKERL 211

Query: 238 LPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297
           +     A++  DDA S+ +  R      RV      G  +    +       +       
Sbjct: 212 IQGAGLAVVGVDDAPSRAIADRRGADLVRVHVP--HGDVLCTDALTVRDGIVREPDGTAL 269

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
            D + +  L G     NA VA  +  A+ +    +   L     +P R E VG       
Sbjct: 270 ADVNGIGSLRGAHNWQNAAVAVAVARALDLSPEQIQAGLTSFPGLPHRMEEVGRRGHVLF 329

Query: 358 IYVDYAHTSNSLEMILKNIRTITS 381
           +    A  ++S E  L   R I  
Sbjct: 330 VNDSKATNADSTEKALTAFRDIHW 353


>gi|149907492|ref|ZP_01896239.1| UDP-N-acetylmuramate-alanine ligase [Moritella sp. PE36]
 gi|149809162|gb|EDM69091.1| UDP-N-acetylmuramate-alanine ligase [Moritella sp. PE36]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 110/349 (31%), Gaps = 32/349 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               ++A +GT GK++ A+ V  I + +G    F IG      + +          I   
Sbjct: 89  QHRYVIAASGTHGKTTTAAMVAWILEYAGLEPGFLIGGVPQNFTESARLGGGYFFVIEAD 148

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  +    +    V                 +       NL  DH D      A    + 
Sbjct: 149 EYDTAFFDKRSKFV---------------HYQPNTLIMNNLEYDHADIFPDLAAIQR-QF 192

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     ++  +     EV  +      + L   Y+G      +   +      
Sbjct: 193 HHVVRTVPSNGLILMPDNVPALDEVKAQGCWTPVQCLGAEYRGVDGSHWQAKKLRADASQ 252

Query: 292 TISVEGKDF--DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                  +      + L GE  + N ++A       G++ +  +  L +      R E  
Sbjct: 253 FEVYCKGELAGVVKWNLIGEHNLQNGMMAIAAAHYAGVELSQAITGLGEFKTPKRRMEVK 312

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMG---KI 405
           G   +G R+Y D+AH   ++   L  +R  + + RII V      R    R  MG   + 
Sbjct: 313 G-EVQGIRVYDDFAHHPTAIATTLAGLRAAVGNERIIAVLEP---RSNTMR--MGTHQQA 366

Query: 406 ALD---LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
                 LAD  ++        D + +  E+           NR +A+  
Sbjct: 367 LAQSLTLADDVLLYQPEGLDWDLQPVADELCAEHSLRQGVDNRDKAVIH 415


>gi|326560032|gb|EGE10427.1| bifunctional protein FolC [Moraxella catarrhalis 46P47B1]
          Length = 442

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 107/389 (27%), Gaps = 56/389 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---------- 167
             V GT+GK S    +  IC+  GL +        +S   +                   
Sbjct: 53  FTVAGTNGKGSTTKTIAAICEACGLKTALYQSPHLVSFTERICINGNEISESDLVAAFEA 112

Query: 168 ---------IYLAKALSYLSSQGVTHVSVEASSHGLDQH------RLDGIKLIAGSFTNL 212
                    + L+       +        +     L+         ++ I       TN+
Sbjct: 113 VENARVAKNVTLSFFEMTTLAAFWHFNQKKCDVWVLEIGLGGRLDVVNIINPDVAVITNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G DH+D+          +                         ++               
Sbjct: 173 GIDHVDWLGDDIERIGQEKAGIIR--------------ENIPVILGARQLPNSVHELANR 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K +H   V   + +Q  T            P P           A +  +        
Sbjct: 219 LTKHVHQLGVNYDYMEQDETWIFSNAALTIQLPKPKLSLQNAVNAVAAVLESGIKIHLDS 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--------RI 384
           +        + GRF+    N        D AH S+ +   L                 ++
Sbjct: 279 VIDGLHQVQLAGRFDQRIIN--DRHWIFDVAHNSHGISFFLAQWADEWHKHKKIYPDAKL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD-----LADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            V+F   GD+D      + K ALD     + D ++   ++PR+ D + +   +   I   
Sbjct: 337 KVIFSMLGDKDVDAGLEVIKAALDDKKISIHDWSVAAINHPRAMDLQTLLGHVHTHIQPS 396

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 +  +A ++     + QD++VV G
Sbjct: 397 NLKIYQDLAQAAQSVSTDASTQDLIVVFG 425


>gi|319776146|ref|YP_004138634.1| folylpolyglutamate synthase [Haemophilus influenzae F3047]
 gi|317450737|emb|CBY86957.1| folylpolyglutamate synthase [Haemophilus influenzae F3047]
          Length = 434

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 52/388 (13%), Positives = 112/388 (28%), Gaps = 41/388 (10%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
                ++ V GT+GK +    ++ I    GL          +    +        P    
Sbjct: 42  HPAPYVITVGGTNGKGTTCRLLETILLNHGLRVGVYSSPHLLRYNERVRIQNQDLPDEAH 101

Query: 172 K----ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYF 227
                 +    ++ +T+      S  L   +   + ++       GR             
Sbjct: 102 TASFAFIDENKTESLTYFEFSTLS-ALHLFKQAKLDVVILEVGLGGRLDATNIVDSHLAV 160

Query: 228 NAKMRLFEELL---PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
              + +         +E  A   A        +        + +    +     + +   
Sbjct: 161 ITSIDIDHTDFLGDTREDIAFEKAGIFCENCPVVIGEPNVPQTMLDQAEKLHCQVARRDV 220

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKLHV 341
               +Q   + + ++           Q+  A  A  L     +        L    +   
Sbjct: 221 DWLFEQNAENWQWQNKKVRLENLPFCQIPLANAATALAAVQCLPFDISEQTLRKSLQEVE 280

Query: 342 VPGRFEFVGTNSRG-------------GRIYVDYAHTSNSLEM---ILKNIRTITSGRII 385
           + GRF+ + T+ R                I VD  H  ++ +     L  ++    G++I
Sbjct: 281 LVGRFQAIKTDKREKLADYLGVPVETLPTIIVDVGHNPHAAKYLSEKLTALKCNIEGKMI 340

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAI-----VTDDNPRSEDPEKIRAEIIHGIPGFI 440
            V G   D+D            +     I     VT    R +  +++  ++    P   
Sbjct: 341 AVCGMLKDKDANG-------VFEHLTPIIDEWHCVTLGGYRGQSGDELADKLKSHFPNIQ 393

Query: 441 EKGNRI--EAIRTAIEMLNKQDVLVVAG 466
              +    + +RTA++   K DV++V G
Sbjct: 394 ATSDNSVMDGVRTALKSAVKNDVVLVFG 421


>gi|229591615|ref|YP_002873734.1| dihydrofolate:folylpolyglutamate synthetase [Pseudomonas
           fluorescens SBW25]
 gi|229363481|emb|CAY50701.1| dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Pseudomonas fluorescens SBW25]
          Length = 435

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 56/391 (14%), Positives = 110/391 (28%), Gaps = 38/391 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
            + A    G+    ++ VTGT+GK S  +FV  + Q  GL          +    +    
Sbjct: 30  QVAARLGLGRPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYNSPHLLRYNERVQLN 89

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
              +              G   +S+       +   L    L   +  ++    +     
Sbjct: 90  GVEASDEQLCEAFAALDAGRGEISLTY----FEMGTLAAFWLFERAQLDVVVLEVGLGGR 145

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK- 281
                     L          A    +   S    K       +    G       L   
Sbjct: 146 LDTVNVVDADLALVTSIGVDHADYLGNTRESVAYEKAGIFRQGKPALCGDVEPPHTLLDK 205

Query: 282 ---VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              +      +    ++E  +  + +           L    L      ++AL L+    
Sbjct: 206 VRELDCPFFLRGREFNLEIGEQHWQWRGRDARGQAVELHDLPLLNLPMENAALALQAYLL 265

Query: 339 LHVVPG---------------RFEFVGTNSRGGRIYV--DYAHTSNSLEM-ILKNIRTIT 380
           L +                  R +      +G R+ +  D  H  ++ E    +  RT  
Sbjct: 266 LDLPWSAEQIATTLLATRVVGRLDRREFEWQGKRLNLLLDVGHNPHAAEYLAQRLSRTPP 325

Query: 381 SGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHG 435
            GR + VFG   D+D      P++G +       A+   D PRS    ++      +   
Sbjct: 326 VGRRLAVFGLLADKDLEGVVAPLLGNVQA----WAVAPLDTPRSRPAAELEVALQNLGAA 381

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  +    +   A+     +    D +++ G
Sbjct: 382 VASYASVTD---ALEAQCAIATPDDEILLFG 409


>gi|254525588|ref|ZP_05137640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537012|gb|EEE39465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
          Length = 478

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 94/306 (30%), Gaps = 32/306 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           +VVS +      +        I VV                    N + +TGT+GK++V 
Sbjct: 83  VVVSPSIPYDHTTIIELKKKGIKVV-------GEINVAWEILKDTNWIGITGTNGKTTVT 135

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +  I   +GL +   G   T                 L K       + +  V  E S
Sbjct: 136 HLLSHILCDNGLYAPFAGNIGTP----------------LCKYACSKKLEKIDWVVAELS 179

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S+ ++      +K   G +T    DH++ H+T + YFN   +   E            + 
Sbjct: 180 SYQIEIS--PEVKPNIGIWTTFTEDHLERHKTLENYFN-IKKSLLEKSDFRIYNYDDKNL 236

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                 + R       +    +      +     I  + +    +E      +  L    
Sbjct: 237 RNHYSSLSRGVWITTSLDKSNFIQCDYWIDDQAYIVERGKRLFKLEYFSLRGMHNL---- 292

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              N L+       +G+    + + L     +P R E +  N+    I    A   +S  
Sbjct: 293 --QNLLLVIAAVRKVGLSGKEIKDSLSNYKQLPHRMETIYKNNYLEIINDSKATNFDSSI 350

Query: 371 MILKNI 376
             + +I
Sbjct: 351 AGISSI 356


>gi|224534179|ref|ZP_03674759.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S]
 gi|224514604|gb|EEF84918.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S]
          Length = 468

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 127/415 (30%), Gaps = 44/415 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY        + +    + V +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYDKGGLQVLLEAKELNIPVLSYPEVLGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +F+  +  + GL+   I   S++  F  ++ +   S I++A+   Y         ++  
Sbjct: 129 TAFLGLLFNKLGLNPNVI-VGSSVKDFGDNSAIAGISNIFIAETCEYKKHFLYFSPNMLI 187

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  +H+D+ +  +A  +A ++    L       I   D
Sbjct: 188 -------------------LTNIDYEHVDFFKNYEALEDAFLQYINNLKKNGILIINSDD 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFLF 304
           +   K   +                    +  +   +     +                 
Sbjct: 229 NNLLKIKRQINRKDINIFSFGSKDLSNFQINNIVVENEYFCFSFLGLCNIKLKTALFHNV 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                  +   L       +I      V +  +    +  R E +    +G     DYAH
Sbjct: 289 LNFSAALLALNLFLESNGKSIFNFEEAVKKIAKNYSGIKRRVEVIK-EKKGVIYMDDYAH 347

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD---- 418
               +   L  I+     + I++        R +       ++   + DI I+ +     
Sbjct: 348 HPREIRDTLFGIKNFYKNKRIILDFMPHTFTRTKEFFNDFVEVLS-VVDILILHNIYLSN 406

Query: 419 ----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               NP  E   ++   I           +  ++I     +L   D+ +  G G+
Sbjct: 407 RENFNP-DELSVQLFLNIKKINKNTYFFKDVKDSIEFIKSLLISGDLFITMGAGN 460


>gi|160871689|ref|ZP_02061821.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Rickettsiella grylli]
 gi|159120488|gb|EDP45826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Rickettsiella grylli]
          Length = 452

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 51/291 (17%), Positives = 92/291 (31%), Gaps = 20/291 (6%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNR 161
              A+ +   +  ++LAV+GT GK++V+S +  I   +G    F IG  +     +    
Sbjct: 93  QWLAAHVLRNY--HVLAVSGTHGKTTVSSLLSWILAAAGLNPGFLIGGLAKNFDHSACLG 150

Query: 162 LTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                 I          +        +  S  +  H             NL  DH D   
Sbjct: 151 KGDFFVIE---------ADEYDTAFFDKRSKFIHYH------PKTLILNNLEFDHADIFP 195

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
              A    +       +P +   I    D   ++V+ + +             + I    
Sbjct: 196 NLDAIKM-QFSYLLRTVPSQGLIICPQRDRNIQQVLSQGYWTPIEYTGNEKNKEVIWHTA 254

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
           +      Q        K  +  + L GE    NA+ A      +GI     +  L +   
Sbjct: 255 LLKADASQFEIYYKNSKQGEVHWSLIGEHNAANAISAVAAAHHVGIHPQKAIAALNQFQG 314

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
           +  R E       G  +Y D+AH   ++   L  +R     + ++V    G
Sbjct: 315 IKRRLEIYK-KINGITLYDDFAHHPTAIAATLSGLRKKIGKKRLLVILECG 364


>gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
           ananatis AJ13355]
          Length = 438

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 65/398 (16%), Positives = 129/398 (32%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALCEAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L KA + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGLP-------------ALSLLKAPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--THSLKAAAATILNVTEDHMDRYPLGMQQYRAAK---LRIYENAQVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADD  +  V           + +G          +      ++V  + E           
Sbjct: 213 ADDGMTMPVRGADARCVSFGIDIGDYHLNKQQGSIWLRAKGEKVLNTDEMTLV------- 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  +  L  L     +P RF+ V  +     I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRSTSLSALAAYSGLPHRFQLVHQSRGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E     ++ +     + +   G  +     P+             +  D  R     +
Sbjct: 326 STEA---ALKGLEVNGTLWLLLGGDGKSADFSPL----------ATYLQGDRIRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
               +    P    + +   +A+      +   D++++
Sbjct: 373 DGDALAALRPDVAVRTDTLQQAMEQIARQVQPDDMVLL 410


>gi|326568671|gb|EGE18742.1| bifunctional protein FolC [Moraxella catarrhalis BC7]
 gi|326572663|gb|EGE22652.1| bifunctional protein FolC [Moraxella catarrhalis CO72]
          Length = 442

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 107/389 (27%), Gaps = 56/389 (14%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP---------- 167
             V GT+GK S    +  IC+  GL +        +S   +                   
Sbjct: 53  FTVAGTNGKGSTTKTIAAICEACGLKTALYQSPHLVSFTERICINGNEISESDLVAAFEA 112

Query: 168 ---------IYLAKALSYLSSQGVTHVSVEASSHGLDQH------RLDGIKLIAGSFTNL 212
                    + L+       +        +     L+         ++ I       TN+
Sbjct: 113 VENARVAKNVTLSFFEMTTLAAFWHFNQKKCDVWVLEIGLGGRLDVVNIINPDVAVITNI 172

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
           G DH+D+          +                         ++               
Sbjct: 173 GIDHVDWLGDDIERIGQEKAGIIR--------------ENIPVILGARQLPNSVHELANR 218

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
             K +H   V   + +Q  T            P P           A +  +        
Sbjct: 219 LTKHVHQLGVNYDYMEQDETWIFSNAALTIQLPKPKLSLQNAVNAVAAVLESGIKIHLDS 278

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG--------RI 384
           +        + GRF+    N        D AH S+ +   L                 ++
Sbjct: 279 VIDGLHQVQLAGRFDQRIIN--DRHWIFDVAHNSHGISFFLAQWADEWHKHKKIYPDAKL 336

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD-----LADIAIVTDDNPRSEDPEKIRAEIIHGI--P 437
            V+F   GD+D      + K ALD     + D ++   ++PR+ D + +   +   I   
Sbjct: 337 KVIFSMLGDKDVDAVLEVIKAALDDKKISIHDWSVAAINHPRAMDLQTLLGHVHTHIQPS 396

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 +  +A ++     + QD++VV G
Sbjct: 397 NLKIYQDLAQAAQSVSTDASTQDLIVVFG 425


>gi|307248439|ref|ZP_07530460.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306855081|gb|EFM87263.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 439

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 152 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSSGCILSAAA 210

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 211 DENVQNTLKMGSYSELQF----IGEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGA 266

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G    G  +Y D+AH   ++
Sbjct: 267 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAI 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  L D     V   +    
Sbjct: 326 AATINALRGKVGKEQRILAVLEPRSNTMK---MGLHKEEIAPSLVDANAVFVYQPDTIPW 382

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 383 AVSVITDNLTQPAKWS---ADLDEVVKMIVEEAKPTDHILV 420


>gi|218532974|ref|YP_002423790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium chloromethanicum CM4]
 gi|218525277|gb|ACK85862.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           chloromethanicum CM4]
          Length = 455

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 107/328 (32%), Gaps = 39/328 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSA------TIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           + +A   G  A+V++    L             ++  PI+   +   F    A+      
Sbjct: 58  LNEADWSGFSALVLAPGVPLTHPEPHWTVGLARQAGIPIIG--DIEIFCRERAAL---AP 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+TGT+GKS+  +    + + +G      G   T     +    T    + L   
Sbjct: 113 DAPFVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGTAILSLEPPAATRVHVVEL--- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS  +D      +K   G   NL  DH+D H T + Y      +
Sbjct: 170 ----------------SSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENY----AAI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E L+     A+I  DD Y   + +R      R+   G+                    +
Sbjct: 208 KERLVAGADLAVIGVDDPYCAAIAERRTGERIRLHIEGHGDAAGDYVGANGTVRGPDGAV 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
                +   +  L G+  + NA  A    I +G+ SA +   L+    +  R E +    
Sbjct: 268 ---IAEVSGIQALLGDHNLQNAAAAVAAAIRLGLSSAEIAAGLKSFPGLAHRMEPLRRIG 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS 381
               +    A  ++S E  L   R I  
Sbjct: 325 PTLFVNDSKATNADSTEKALLAFRDIHW 352


>gi|91777260|ref|YP_552468.1| folylpolyglutamate synthetase [Burkholderia xenovorans LB400]
 gi|91689920|gb|ABE33118.1| Folylpolyglutamate synthetase [Burkholderia xenovorans LB400]
          Length = 436

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 120/402 (29%), Gaps = 45/402 (11%)

Query: 102 LSLFAS---RLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           L+  A     +       ++ V GT+GK S  + ++ I  R+G +         +S   +
Sbjct: 26  LARIAQVRDAMQLSFACPVITVGGTNGKGSTCAILESILLRAGYTVGCHTSPHLLSFNER 85

Query: 159 DNRLT----------TPSPIY-----LAKALSYLSSQGVTHVSVE-ASSHGLDQ------ 196
                              +      LA+ ++    +  T   +   +S GLD       
Sbjct: 86  ARVNGEMASDADLLPHFEAVEAARLSLAEPVTLTYFEFTTLAIMSLFASRGLDAVIFEVG 145

Query: 197 --HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
              RLD + ++      +    ID+                 +     PAI         
Sbjct: 146 LGGRLDAVNILDTDCAIITSIDIDHTDYLGDTREKIAFEKAGIFRPGKPAICADPVPPQS 205

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +           L                  +    T+      +  L           
Sbjct: 206 LIDYAEKIGAQLWLFGRDFRYEGQAGSERQQWSYVGPTMRRSALAYPALRGANQLINTSA 265

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
           AL            SA  +        +PGRF+ +        I +D  H  ++  ++ +
Sbjct: 266 ALAGLEALRDRLPVSAQDIRLGLANVELPGRFQVLPGKPA---IVLDVGHNPHAAAVLTQ 322

Query: 375 NIRTI-TSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
           N+  +        VFG   D+D       + G+I     D   VTD   PR+   E++ A
Sbjct: 323 NLGNMGFFPYTYAVFGAMRDKDIAGLLTHLKGEI-----DHWCVTDLPTPRAASAEQLEA 377

Query: 431 EII-HGI-----PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +   G+               EA + A++  ++ D +VV G
Sbjct: 378 ALREQGVGESADSSVTRYATPAEAFQDALKRASENDRIVVFG 419


>gi|313677380|ref|YP_004055376.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
 gi|312944078|gb|ADR23268.1| UDP-N-acetylmuramate/alanine ligase [Marivirga tractuosa DSM 4126]
          Length = 465

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 9/150 (6%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
           F   +PG   V NA+VA  +   +G+    +LE +     V  RFE+V   +       D
Sbjct: 279 FQLSVPGFHNVENAVVAIAIANQLGLSDKEILEGIRTYQGVKRRFEYVIQRN-DFVFIDD 337

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDN 419
           YAH  + ++ +L ++R +  G+ + V        R +       +    LAD  ++ D  
Sbjct: 338 YAHHPSEIKAMLTSVRALYPGKKVSVLFQPHLYSRTRDFAVEFSQSLS-LADEVMLLDIY 396

Query: 420 PRSEDP-----EKIRAEIIHGIPGFIEKGN 444
           P  E P      +I  E I     +  + +
Sbjct: 397 PARELPIEGVSSEILLESIQADEKYKVEKD 426


>gi|260912139|ref|ZP_05918695.1| tetrahydrofolate synthase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633745|gb|EEX51879.1| tetrahydrofolate synthase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 435

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 53/390 (13%), Positives = 95/390 (24%), Gaps = 32/390 (8%)

Query: 102 LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNR 161
           L+L A           + V GT+GK S +  +  I Q  G           +    +   
Sbjct: 33  LALDAYLGIPHRTFKSIHVAGTNGKGSTSHTLAAILQACGYRVGLYTSPHLVDFRERIRI 92

Query: 162 LTTP--SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR--------------------- 198
              P      +     + +     H S    +  +                         
Sbjct: 93  NGEPLSESYVVDFVAKHRAFFEPLHPSFFELTTAMAFSYFAESHVDVAVIEVGLGGRLDC 152

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
            + I  I    TN+  DH  +     A    +     +            +     E   
Sbjct: 153 TNIISPILSVITNISLDHTGFLGDTLAQIAVEKAGIIKPNTPVVVGETTVETRQVFENTA 212

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAI--HNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           +  +A         +      +    +         I  E                   L
Sbjct: 213 KEQHAPVVWAEQNPEVLQWQHRNEGGMSLQTHSFGDIVFELGGDYQHHNANTILTAARQL 272

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A G  I     +  V + +  +    G      T S    +  D  H     + +   I
Sbjct: 273 QAMGFGI----TAKEVAQGMGTVCRSTGLQGRWQTLSHAPTVVCDTGHNVAGWQYLSSQI 328

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGI 436
           R  +   + +VFG   D+D      +  +    A          R+   E +  +     
Sbjct: 329 RAQSYRTLRMVFGMVDDKDLD---TVLTLLPKDATYYFTQASTHRAVPSEVVAQKAAKNA 385

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  N   A + A+    K D + V G
Sbjct: 386 LQGTIYNNVYAAYKAALSDAEKDDFIFVGG 415


>gi|71891927|ref|YP_277657.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|122063236|sp|Q493Q3|MURD_BLOPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71796033|gb|AAZ40784.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 440

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 63/404 (15%), Positives = 126/404 (31%), Gaps = 64/404 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A  IVVS    L            I ++ +              +    I+A+TG++GKS
Sbjct: 66  ATLIVVSPGVRLDHPVLIEALKLGIEIIGDIE--------LFTREATAPIIAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V ++ + +G      G          +                           +
Sbjct: 118 TVTQLVSRMARIAGWHVGVAGNIGVPVLSLLNKS--------------------YQLYIL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFNAKMRLFEELLPKESPAII 246
           E SS  LD      ++ IA +  N+  DH+D++    + Y+ +K R+++        A+ 
Sbjct: 158 EISSFQLDT--TYSLRAIAAAILNVSEDHMDHYPGGLKQYWFSKQRIYKNAKICVMNALD 215

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
           +          +  +                + K    I    +  ++      +     
Sbjct: 216 FLTIPIYH---EYDYCISFGENEDSADYYLKYYKGHTWIVAYNEYVLNCSEMRINNRINY 272

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
                  NAL A  L   I I  ++ L+ L +   +  R + +  N     I    A   
Sbjct: 273 I------NALSALALSDIIKIPRSVSLKVLCQFSGLAHRCQLIYKNHGVSWINDSKATNV 326

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLA---DIAIVTDDNP 420
           ++ +  + N++    G + ++ G  G   D    K  I            D  ++T    
Sbjct: 327 SATKEAINNLKL--CGTLHLILGGDGKLADFSSLKHLIKQHEIHLYCFGKDGLLLTT--- 381

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                         G    I     I+A+R     +  +D++++
Sbjct: 382 -------------LGFSDVILTNTMIQAMRIINRRIKAKDIVLL 412


>gi|157828435|ref|YP_001494677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933147|ref|YP_001649936.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. Iowa]
 gi|157800916|gb|ABV76169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908234|gb|ABY72530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           rickettsii str. Iowa]
          Length = 500

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 112/406 (27%), Gaps = 41/406 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKSFNIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G     +  A+ ++      +   +     +      V +  +
Sbjct: 120 ALISHILNSSGLDYPVAGNIGVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNIT 179

Query: 191 SHGLDQHRLDGIK----------LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              LD+H+               +   S+  +  D+    +        +          
Sbjct: 180 PDHLDRHQDMPCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFSVT 239

Query: 241 E----------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +                  D  S E+   + +                  +    +    
Sbjct: 240 QILENGISVVDDKISANFFDDISFELQHNSESFRQDEFQGEPAEPECIKIREHRQNLHNS 299

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  S       F   L G     N   +  +   IG++   +LE +     +P R +++G
Sbjct: 300 LVSSFMHYTVPFNKNLQGVHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIG 359

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + +         A  + S    +K +  I     +          +  +P   +I     
Sbjct: 360 SINNISFYNDSKATNAISAVQSIKALDNIYW---LAGGIPKEGGIEEIKPYFSQIKKAYF 416

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                          ++I A     I  F+   N  +A   A +  
Sbjct: 417 -----------YGQAKEIFANTAKHIVDFVICDNLEQAFDLAYKDA 451


>gi|262189738|ref|ZP_06048096.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034382|gb|EEY52764.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 403

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 134/413 (32%), Gaps = 48/413 (11%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSS 128
           +VVS+A + Q+          I +V   R+   L+      +G      +AV GT GK++
Sbjct: 2   VVVSTAINEQNPEIQAAREKRIPIV---RRAEMLAELMRFRHG------IAVAGTHGKTT 52

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             + V QI   +GL    +     + S   + RL +   +      S  S          
Sbjct: 53  TTALVTQIYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH------- 104

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                        ++ +    TN+  DH+D +             F   LP    AI+  
Sbjct: 105 -------------LQPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCI 151

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLP 307
           DD   +E++ R                   ++       + Q T+  +GK + D    +P
Sbjct: 152 DDPVIRELIPRVSRQVITYGFSEDADV--RIENYRQNGQQGQFTVVRKGKANLDITLNIP 209

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAH 364
           G     NA  A  +     I    +L  +        RF+ +G    G     +  DY H
Sbjct: 210 GRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGH 269

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               +++ +K  R   + + +V+        R +        +     D+ I+ D     
Sbjct: 270 HPTEVDVTIKAARNGWAEKRLVMIFQPHRYTRTRDLYDDFANVLEQ-VDVLIMLDVYAAG 328

Query: 423 EDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           E P        +   I   G    I   +          +L   D+++  G G
Sbjct: 329 EKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQDGDLVLTQGAG 381


>gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus succinogenes 130Z]
 gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           succinogenes 130Z]
          Length = 437

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 130/394 (32%), Gaps = 51/394 (12%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S   +++        +  I VV +          R      + ++A+TG++GKS+V 
Sbjct: 69  IVISPGLAVKTPEIQTALSAGIEVVGDI-----ELFCREANIQAKPVVAITGSNGKSTVT 123

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + V ++ +  GL +   G     +    D                           +E S
Sbjct: 124 TLVAEMAKADGLRAGMGGNIGIPALSLLDAEYDL--------------------YVLELS 163

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
           S  L+     G++  A +  N+  DH++ +   + Y  AK++++         A+I A+D
Sbjct: 164 SFQLET--TFGLRARAATVLNVTEDHMNRYADLEDYRQAKLKIYAN----AETAVINAED 217

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           + +++  +RA     +         +    +    +      + +   +      + G  
Sbjct: 218 SLTQDNKQRA---KRQFSFGESHADYWLKTENGKQYLMAGREVVLPCDEV----KISGRH 270

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NAL +  L  A+G+ +  +   L     +  RF+     +    I    A    S  
Sbjct: 271 NYMNALASIALAQAVGVKTHGIRTALRTFTGLDHRFQLAHLANGVRWINDSKATNVGSTV 330

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA 430
             L  +     G + ++ G  GD        + K+             +          A
Sbjct: 331 AALTGL--YLEGNLHLLLG--GDGKGADFSELEKLVNKPEIFCYCFGQD---------GA 377

Query: 431 EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +              +A+      L   D++++
Sbjct: 378 ALAKLSARSQLFETMEQAVNALRPALKSGDMVLL 411


>gi|332768881|gb|EGJ99060.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2930-71]
          Length = 476

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 76  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 124

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 125 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 162

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 163 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 222

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 223 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMCVTLNAPGRHNALN 281

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 282 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 341

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 342 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 400

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 401 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 452


>gi|261414615|ref|YP_003248298.1| FolC bifunctional protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371071|gb|ACX73816.1| FolC bifunctional protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327872|gb|ADL27073.1| dihydrofolate synthase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 102/348 (29%), Gaps = 15/348 (4%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +TRK      +    +     + V GT+GK S + ++  + Q  GL +        +S 
Sbjct: 22  ASTRKLCEALGN---PQKKFKTIHVVGTNGKGSTSYYLSGVLQAHGLKTGLYTSPHLVSM 78

Query: 156 FAQDNRLTTP------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
             +      P        + +    +   +Q         +      +    I +     
Sbjct: 79  RERIRVNDLPIDDESLDRLIMQVKAAAEETQVEPTFFEVLTIVAFLYYAEQNIDVAVLEA 138

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
              GR         +      + L    +   + + I  +        +   + G     
Sbjct: 139 GMGGRLDSTAVADGELIVLTSIGLEHTEVLGSTESAILKEKMGVAGSAQSILSNGRSKTF 198

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           V        + +          +  V     D   P  G+  + NA ++           
Sbjct: 199 VLGGLNDALIAEAKVFAASHGCSCVVPEIRNDIELPNLGQHYIENASLSLKAAELFLNKF 258

Query: 330 ALVLEHLE-KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVV 387
              L           GR + +   +   +  +D AH S+++  +++ +       +   V
Sbjct: 259 DDSLALKTLTTRSWAGRMQKLIDANGVTKFILDGAHNSHAVRRLVETLDKYYPNQKFHCV 318

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIH 434
           FG   D+D G    M K+         +T    PR  + E ++ E+  
Sbjct: 319 FGALRDKDVG---EMLKLMAPHVSAWHITRTPYPRFRELEDLQGELEK 363


>gi|154509044|ref|ZP_02044686.1| hypothetical protein ACTODO_01561 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798678|gb|EDN81098.1| hypothetical protein ACTODO_01561 [Actinomyces odontolyticus ATCC
           17982]
          Length = 481

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 141/429 (32%), Gaps = 63/429 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-------LFASRLYGKH 113
           P+A+A+     +V +   L   S  I ++ P+       +            A RL  + 
Sbjct: 55  PEALAR----AIVEANLDLVVVSPGIPAHHPVFSAC---EAAGIEVWGEVELAWRLQEEG 107

Query: 114 P---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           P      L VTGT+GK++    + +I + +G  + Q+G   T  + A D+          
Sbjct: 108 PHAGRPWLVVTGTNGKTTTVGMLGEILRCAGAKAEQVGNIGTPITRAIDS---------- 157

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                          +VE SS  L   R   +  +A    N+  DH+D+H + +AY   K
Sbjct: 158 ----------DAEVFAVELSSFQLHTVRT--VSPLASICLNVDADHLDWHGSVEAYAADK 205

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKV 282
            R++E  +                E       A    L++G                +  
Sbjct: 206 ARVYENTIRACVYPASDRRVEQMVENADVVEGARAIGLTLGSPSVSQFGIVEGLLVDRAF 265

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +    ++          P P    V +AL AA L  A G++   V   L      
Sbjct: 266 VEDRARHAAALAHISDLAGAYGPHPSAAVVSDALAAAALARAYGVEPEAVEAGLRAFRPA 325

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R   +   +    +    A  +++    L  +      R  +    G  + Q    ++
Sbjct: 326 GHRRAIIAHAADLTWVDDSKATNAHAARASLAGLPP----RSAIWIVGGDAKGQDFTELI 381

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIE-----AIRTAIEML 456
            ++   L  + ++       ED   +   +  G P     + +  E      +  A+ + 
Sbjct: 382 RQVEPTLRGVVVI------GEDRAPLVEALQAGAPDVPRVEVDGHEDWMFSVVNEAVALS 435

Query: 457 NKQDVLVVA 465
              D +V+A
Sbjct: 436 MPGDTVVLA 444


>gi|291549330|emb|CBL25592.1| folylpolyglutamate synthase/dihydrofolate synthase [Ruminococcus
           torques L2-14]
          Length = 432

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 56/391 (14%), Positives = 109/391 (27%), Gaps = 48/391 (12%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
           TR+ L    +   GK    I+ V GT+GK SV +++  + +  G S+        +    
Sbjct: 25  TREMLLFLGNPQNGK---KIIHVAGTNGKGSVCAYLDAMLRAEGKSTGLFTSPHLVKMNE 81

Query: 158 QDNRLTTPSPIYLAK------------ALSYLSSQGVTHVSVEASSH------GLDQ--- 196
           +                                        + A +       G++    
Sbjct: 82  RIVLNGKQISDEDFCEVFEETMQAVRRMQDAGLEHPTFFEFLFAMAMKAYDRAGMEYIVL 141

Query: 197 -----HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                 RLD    +      +    +D+ +               ++  E P        
Sbjct: 142 ETGLGGRLDATSSVEPVACVITSIGLDHMEYLGDTVEQIAGEKAGIIRPEVPVFFAQTAP 201

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
            S  V+++              GK  +        +      S       +     G +Q
Sbjct: 202 ESDSVIEKTAE--KEGCFCKKIGKDAYEILGIEDKHIAFSCASAYYGTTTWKLNNIGTYQ 259

Query: 312 VYNALVA--AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             NAL+A      +                    GR E +        +YVD AH  +++
Sbjct: 260 PGNALLAMEVMRYLFKENGHPQEWRTALARVKWAGRMEEILPK-----VYVDGAHNVSAI 314

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD---IAIVTDDNPRSEDPE 426
           +   +++     G  I++F    D++      M       AD     +   D  R+ D  
Sbjct: 315 QAFARSVPKNPDGN-IILFSAVKDKEYE---EMISYLCKHADAEEYVVTLIDGDRATD-A 369

Query: 427 KIRAEIIHGIPG--FIEKGNRIEAIRTAIEM 455
            I  E+             +  EA++  + +
Sbjct: 370 HILGELFRKYTEQPVTVIESVKEAMQYVLRI 400


>gi|257454933|ref|ZP_05620181.1| FolC bifunctional protein [Enhydrobacter aerosaccus SK60]
 gi|257447643|gb|EEV22638.1| FolC bifunctional protein [Enhydrobacter aerosaccus SK60]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 50/384 (13%), Positives = 116/384 (30%), Gaps = 33/384 (8%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-------QDNRLT 163
            +    +  V GT+GK S  + + +ICQ++G  +        +             +  T
Sbjct: 55  KQTDAFVFTVAGTNGKGSTTATIAEICQQAGYKTALYQSPHLLVFNERVRINGEMVDDQT 114

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGL--DQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                   +   +     ++   +   +  L   Q+  D   L  G    L   ++    
Sbjct: 115 LIDAFAKIEQARFDCGLTLSFFEMTTLAAFLIFAQNHCDVWVLEVGLGGRLDVVNVIDPN 174

Query: 222 ----TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
               T     + +             A I  D+           +    +++  +     
Sbjct: 175 LAVITNVGIDHVEWLGDTREKIAVEKAGILRDNLTLVYGETDMPSTIAPLIAQHHAHLLQ 234

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
           + K     H K   T            P+P       A     L  +    +   ++   
Sbjct: 235 YGKDYGYRHTKGGATWQYSNSAVTLSLPIPNLSLHNTATAITALLASPLTITQDHIQAAL 294

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE--------MILKNIRTITSGRIIVVFG 389
               + GRF+    ++R  +   D AH  + ++         +    R   + ++ +V  
Sbjct: 295 PKVKLAGRFDSRRMSAR--QWVFDVAHNDHGMQFLLKQFTPYVHAYQRQHPTAKLHLVIS 352

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTDD-------NPRSEDPEKIRAEIIHGIPGFIEK 442
              D+D    P++ ++    +   +  D        +PR+   E++   +          
Sbjct: 353 MLADKDIE--PVLARL-QQFSQTVMPIDSVHSGVISHPRASSQERLTELLPRYFNSVCVF 409

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAG 466
            +   A ++ I+     D+++V G
Sbjct: 410 EDLSLATQSVIDRSQDNDLILVCG 433


>gi|42520860|ref|NP_966775.1| folylpolyglutamate synthase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410600|gb|AAS14709.1| folylpolyglutamate synthase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 55/394 (13%), Positives = 126/394 (31%), Gaps = 31/394 (7%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
           FLS   +      P  ++ + GT+GK S  +F++ I Q +G           +S   +  
Sbjct: 26  FLSKLDNPEKKVPP--VIHIAGTNGKGSTLAFIRYIMQAAGYKVHAYTSPHLVSFNERIV 83

Query: 161 RLTT----PSPIYLAKALSYLSSQGVT--------HVSVEASSHGLDQHRLDGIKLIAGS 208
              +         L +    + ++              +  S H  D   ++        
Sbjct: 84  IAGSYIDDNELYSLLEECRAVIAEQPITLFEAATIAAFLAFSRHKADITLVEVGMGGRLD 143

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            TN+  + I    T  A  + +       +     A I   +       +          
Sbjct: 144 ATNVIDNPILTIITSIALDHTEYLGPTVEIIAGEKAGIMKPNVPCVIAPQEKSIVNTLEH 203

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--------AG 320
               +   ++   +     K+   +  +       FPLP     +  + A          
Sbjct: 204 HAINKKSPLYRGGLEWNCKKKNNKMVFQSAIQSIEFPLPSLKGDHQVINAGNAIAACSIL 263

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS------RGGRIYVDYAHTSNSLEMILK 374
                       +    +    P R E +   +      +  ++++D AH ++   ++ +
Sbjct: 264 SGKYEFDIGEEDITSGLQCTYWPARLESIKEGNLIFLLPKDWQLFLDGAHNNDGARVLSQ 323

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIH 434
            ++   +  I +VFG   +R+  +     K  + L     V  + P++ +   IR +  +
Sbjct: 324 WVKDNFAEGIYMVFGVTSNRNVEEFLEHLKPYIKLLCAVCVKSE-PKATNTSLIREKANN 382

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDV--LVVAG 466
                +E  +  +AI   I   + Q+V  +++ G
Sbjct: 383 IGIKAVECESIGDAISNHILKASTQNVKTILICG 416


>gi|83748097|ref|ZP_00945126.1| folylpolyglutamate synthase / dihydrofolate synthase [Ralstonia
           solanacearum UW551]
 gi|83725283|gb|EAP72432.1| folylpolyglutamate synthase / dihydrofolate synthase [Ralstonia
           solanacearum UW551]
          Length = 459

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 103/381 (27%), Gaps = 38/381 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------------- 163
             V GT+GK S  + ++ I   +G           I    +                   
Sbjct: 68  FTVGGTNGKGSTCTMLEAILMAAGYKVGCHTSPHLIDFNERARVNGEIATDAMLLPHFEA 127

Query: 164 -------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAGSFTNLG 213
                     P+ L        +           +  L+     RLD + ++      + 
Sbjct: 128 AERARCSFDEPVSLTYFEFTTLAIMHLFAKSGLDAVILEVGLGGRLDAVNIVDPDCAVIT 187

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +D+         A       +     PA+          V           L     
Sbjct: 188 SVDLDHTAYLGDTREAIGFEKAGIFRPGVPAVCSDPVPPVSLVQHAEAIGADLWLIGRDF 247

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                 ++                  +  L           AL A          +A  +
Sbjct: 248 SFQGTTEQQRQQWGWSGRGRRWSALGYPALRGANQLLNASAALAALESVRDRLPITAQDV 307

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGG 392
                   +PGRF+ +        + +D AH  ++   + +N+  +   R    VFG   
Sbjct: 308 RVGLSRVALPGRFQVLPGRPA---VILDVAHNPHAAAALGQNLENMGFFRYTYAVFGAMQ 364

Query: 393 DRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGI-----PGFIEKGNR 445
           D+D     ++G +   + D   +TD   PR+     +   +   G            G+ 
Sbjct: 365 DKDIAG--VLGHLIDKI-DHWCLTDLPTPRAAGTATLEQALADAGFHPGKDASVSTYGDP 421

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A R A+E   + D +VV G
Sbjct: 422 ATAYRNAMERATEDDRIVVFG 442


>gi|152979048|ref|YP_001344677.1| FolC bifunctional protein [Actinobacillus succinogenes 130Z]
 gi|150840771|gb|ABR74742.1| FolC bifunctional protein [Actinobacillus succinogenes 130Z]
          Length = 435

 Score = 44.9 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 51/383 (13%), Positives = 110/383 (28%), Gaps = 31/383 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---------TISSFAQDNRL 162
           +    ++ V GT+GK +    ++ I   +G                     +    D+R 
Sbjct: 44  RPAPYVITVGGTNGKGTTCRLLETILINAGYKVGVYSSPHLIRYNERVRIQNQELADDRH 103

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH-RLDGIKLIAGSFTNLGRDHIDYHQ 221
           T+            L+    + +S        +    +  + L          D      
Sbjct: 104 TSSFAFINEHKNRSLTYFEFSTLSALYLFKQAEVDVAILEVGLGGRLDATNIVDADMAVI 163

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           T     +               A I+              ++                  
Sbjct: 164 TSIDIDHVDFLGDTREKIGYEKAGIFRAGKPVIIGEPDCPHSIAEYAKSLKCAVSRRDVD 223

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                  +  T        + L            ++AA   +   I   ++ + L+++ +
Sbjct: 224 WSFTQQTESWTWQSGKVRLENLPFCQIPLPNAATVLAAVQALPSHISETVIRQSLQEVEL 283

Query: 342 VPGRFEFVGTNSRGG-------------RIYVDYAHTSNSLEM---ILKNIRTITSGRII 385
           + GRF+ +                    ++ +D  H  ++       L  +    SGR+I
Sbjct: 284 I-GRFQKIKPAQLSNLAKPANKPVKSLPQMIIDVGHNPHAARYLSEKLTALHARMSGRMI 342

Query: 386 VVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFI--EKG 443
            V G   D+D     I+  +   + +   VT    R +  E +  ++    P        
Sbjct: 343 AVCGILKDKDATG--ILTPLLPVIDEWICVTLTGERGQTGESLNRKLQALDPDIRTNVFH 400

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           +  E ++ AIE  ++ DV++V G
Sbjct: 401 SVQEGVQNAIEKAHENDVVIVFG 423


>gi|325844609|ref|ZP_08168252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sp. HGF1]
 gi|325489034|gb|EGC91421.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sp. HGF1]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 59/381 (15%), Positives = 111/381 (29%), Gaps = 39/381 (10%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L V   ++                I  +T       +          +   +  
Sbjct: 79  NPGIPYLKVPLLKRA-----------QELKIPIITEVELAFEICEAPFIGITGTNGKTTT 127

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +   +  N L   +   +A  ++   +Q    +  E SS  L    L   +   
Sbjct: 128 TTLIYEMLKESTLNPLIAGNIGEVATEVAK-VAQANQVLVTELSSFQLMGMPLF--RPRI 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H+DYH     Y  AK+ L +     +       DD   + + +        
Sbjct: 185 SLLLNITEAHLDYHLNLDEYRQAKLNLIKNQTSDDYCVYNSEDDVIVEGIKQTKATCIPF 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            LS   +G +I    V            +  K         G+  + + L A  + +  G
Sbjct: 245 SLSEKVEGAYILEGAVYFKEEWIIDVKDILLK---------GDHNLQDVLGAVAVSLLYG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D   +   L++   V  R +FVG            A    + +  LK   +      I+
Sbjct: 296 CDLEAIRTVLKRFAGVKHRLQFVGEIRGVKYYNNSKATNIIATQTALKAFDS-----PII 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +   G DR      ++        +    IVT      E   + +A     +       +
Sbjct: 351 LIAGGLDRGHDLSGLV-----PYFNKIKSIVT----YGETKHRFKALADEHLMPCTVYDH 401

Query: 445 RIEAIRTAIEMLNKQDVLVVA 465
             +A+  A E     D+++ A
Sbjct: 402 LDQAVEDAYEQAIAGDIVLFA 422


>gi|261823015|ref|YP_003261121.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium wasabiae
           WPP163]
 gi|261607028|gb|ACX89514.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium wasabiae
           WPP163]
          Length = 486

 Score = 44.9 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 132/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA +  +       +   P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVI-----RRAEMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVTSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQ 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   +E++ R                 I   +         +    +    +  
Sbjct: 227 AVMCVDDEVIRELLPRVGRHIITYGFSDDADVRIAGYRQTGAQGHFTLERKDKP-LLNVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  A  +    GID   +L  LE+      RF        E V  +S  
Sbjct: 286 LNAPGRHNALNAAAAVAVATDEGIDDESILRALERFQGTGRRFDFLGEYPLELVNGHSGT 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + +V+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         + L  +D+++V G
Sbjct: 405 LMLDVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTDVDTLPELLSQALRGEDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|237736132|ref|ZP_04566613.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium mortiferum ATCC
           9817]
 gi|229421685|gb|EEO36732.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium mortiferum ATCC
           9817]
          Length = 458

 Score = 44.9 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 128/396 (32%), Gaps = 51/396 (12%)

Query: 49  IVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASR 108
           + G   D               I+ SSA   ++          I VV           + 
Sbjct: 65  LEGKNFD--------------MIIASSAIKKENPEYIYALENGIKVVKR-----GELLAM 105

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
           L  +  E  +AV GT GK++ +S    +      +    G    I S A+  +       
Sbjct: 106 LLNE--ECGIAVAGTHGKTTTSSMAASVMLPLDPTIVVGGILPEIGSNAKPGKS------ 157

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                ++       + + +                      TN+  DH++ H + +    
Sbjct: 158 --NYFIAEADESDNSFLYM---------------NPTYSIITNIEADHLENHGSLENIIK 200

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +  +  ++   +     I +D    + +     N      S+  +   I+ + +     K
Sbjct: 201 SFSKFIDQTSKE---VFICSDCEILRGLAAIKENKKITRYSIKDKTADIYAENIEVGEGK 257

Query: 289 QQVTISVE-GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
               + ++  K   F   +PGE  + N+L    L +  G++   +    EK      R+E
Sbjct: 258 TSYDVVIKGEKIGRFTLYIPGEHNILNSLPVIYLALEFGLEEKDIERAFEKFRGSKRRYE 317

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            +  +  G RI  DYAH    ++  L+   +I   +I V+F               K A 
Sbjct: 318 VL-YSGNGIRIIDDYAHHPTEIKATLQGATSIEDSKITVIFQPHRYSRVKFLLENFKNAF 376

Query: 408 DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
           + AD  ++       E  + I    I  +   IE  
Sbjct: 377 EKADEVVLLPIYSAGE--KDIFGVTIEDLQNVIENP 410


>gi|163781898|ref|ZP_02176898.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883118|gb|EDP76622.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 415

 Score = 44.9 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NA+VA+ +    G+ +  + E L +   +P R E V             + T N+L
Sbjct: 242 HNLKNAVVASIIARLKGVSTEDIREVLREFRGLPFRMELVKVWRGVEIYNDSKSTTPNAL 301

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
           +     + +   G +I++   G D+    +P+  + A     +A +       E  E   
Sbjct: 302 KA---ALESFPDGSVILI-AGGKDKGADFKPLR-ETAERKLKLAFLI-----GETRES-M 350

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                G        +  EA+ +A+ +    D ++
Sbjct: 351 KTAFGGGSNIKTMSSLEEAVDSALRVAEPGDFVL 384


>gi|300691108|ref|YP_003752103.1| folylpolyglutamate synthase [Ralstonia solanacearum PSI07]
 gi|299078168|emb|CBJ50811.1| folylpolyglutamate synthase [Ralstonia solanacearum PSI07]
          Length = 432

 Score = 44.9 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 14/132 (10%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPI 401
           PGRF+ +        + +D AH  ++   + +N+  +   R    VFG   D+D     +
Sbjct: 290 PGRFQVMPGRPA---VILDVAHNPHAAAALGQNLENMGFFRYTYAVFGAMQDKDIAG--V 344

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKI-RAEIIHGI-----PGFIEKGNRIEAIRTAIE 454
           +G +     D   +TD   PR+    ++  A    G             +   A R A+E
Sbjct: 345 LGHLLDK-VDHWCLTDLPTPRAASAAQLELALADAGFRPGKDASVATYSDPATAYRNAME 403

Query: 455 MLNKQDVLVVAG 466
              + D +VV G
Sbjct: 404 RATEDDRIVVFG 415


>gi|78046614|ref|YP_362789.1| folylpolyglutamate synthase/dihydrofolate synthase bifunctional
           protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035044|emb|CAJ22689.1| folylpolyglutamate synthase/dihydrofolate synthase bifunctional
           protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 432

 Score = 44.9 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 45/392 (11%), Positives = 106/392 (27%), Gaps = 34/392 (8%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
           ++ A         +++ V GT+GK S  +F++ I + +G           +    +  R+
Sbjct: 31  AVAARLQLAAPATHVIVVGGTNGKGSTVAFIEAIGRAAGWKVGAYTSPHLLRYNER-VRI 89

Query: 163 TTPSPIYLAKALSYL----------------------SSQGVTHVSVEASSHGLDQHRLD 200
                       ++                            + + +     GL   RLD
Sbjct: 90  DGEEASDAQLVDAFAAVEAARGDTALTYFEFGTLAALWLFQQSALELAVLEIGLG-GRLD 148

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            + ++      +    +D+         A       ++    P ++   D  S  + +  
Sbjct: 149 AVNIVDSDVAVITTVDLDHTDWLGEDREAIGAEKAGIIRAWKPVVLGEIDPPSSVLRRAY 208

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP----GEFQVYNAL 316
                 + +           +                       P+P           A 
Sbjct: 209 QLGANAIRAGSDYFFEPIDTRHAESPQSDAPRWRWRDVAVTLELPMPALRAPVQLANAAA 268

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN- 375
             A L                    V GR + +     G ++ +D  H   +   +    
Sbjct: 269 AIAALQALPVEVPDAAWAQGIGNAQVAGRLQRL--EVNGVQVLLDVGHNPQAARALAAAL 326

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEII-H 434
                +GR   ++    D+D         +A  +   A+   +  R +  + + A +   
Sbjct: 327 GTQAHAGRTYAIYAALADKDVLGVVE--AVAGQIDHWALAGLEGARGQSAQALHARLQGS 384

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    +   A+R  ++  +  D ++V G
Sbjct: 385 AAAHAPCHRDVASAVRAVLDRASPGDRVLVFG 416


>gi|37527517|ref|NP_930861.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|44888164|sp|Q7N148|MURC_PHOLL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|36786952|emb|CAE16026.1| UDP-N-acetylmuramate--alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 491

 Score = 44.9 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 134/423 (31%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAY--SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +V SSA      +  A   +  P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVASSAILADNPEIVAAREARIPVI-----RRAEMLAELMRYRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + +  I  ++GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMISSIYAQAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +             F   LP    
Sbjct: 185 ------------------LQPMVAVITNIEADHMDTYHGDFENLKQTFINFLHNLPFYGR 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DD   KE++ R                 I   +         V+   +  D   +
Sbjct: 227 AVMCIDDPVVKELIPRVGRYITTYGFSEEADVRITHYQQKGAQGYFTVS-RQDMADLKVV 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG------- 356
              PG     NA  A  +    GI  + +L  L        RF+F+G  S          
Sbjct: 286 LNAPGRHNALNAAAAVAVATEEGISGSDILAALAGFQGTGRRFDFLGNFSLEHVNGKGGS 345

Query: 357 -RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + IV+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPDKRIVMIFQPHRYTRTRDLYDDFANVLNQ-VDVL 404

Query: 414 IVTDDNPRSE------DPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E      D   +   I   G    I   +  +      ++L+  D+++V G
Sbjct: 405 LMLDVYSAGEVVIPGADSRSLCRTIRSRGKLDPILVSDPAKVTAVLAQVLDGHDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|328957052|ref|YP_004374438.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4]
 gi|328673376|gb|AEB29422.1| UDP-N-acetylmuramate--L-alanine ligase [Carnobacterium sp. 17-4]
          Length = 443

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 117/394 (29%), Gaps = 50/394 (12%)

Query: 58  LFIPQAIAQGAEAIVVSS-AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
            F  + I QG   I  ++   + ++  A       ++           F ++  G+    
Sbjct: 55  NFNKENIHQGLTVIAGNAFPDTHEEIVAANELGLTVIR-------YHDFLAQFIGQF--T 105

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +AVTG+ GK+S    +  +      +S+ IG                P   +       
Sbjct: 106 SVAVTGSHGKTSTTGLLAHVLSPLKNTSYLIG---------DGTGHGVPDADFFILEACE 156

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                + +                  +      TN+  DH DY+ +    F+A       
Sbjct: 157 YRRHFLAY------------------QPDYAIMTNIDFDHPDYYSSLSDVFDAFQS---- 194

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
           +  +   AI+   D     + K   N             F       +           +
Sbjct: 195 MAVQVKKAIVACGDDEQ--LQKLQANVPILYYGFEDHNDFQAKNMTRSTTGSTFDVYVRD 252

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                F  P  G+  + NAL    +C    ID   V+E+L+    V  RF          
Sbjct: 253 EFYGHFEIPTFGKHNILNALSVIAICQYENIDKEGVMENLKTFKGVKRRF--SEKQMLDM 310

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAI 414
            I  DYAH  + +   +   R     + I+         R         + +L+LAD   
Sbjct: 311 VIIDDYAHHPSEIRATIDAARQKYPNKEIIAIFQPHTFTRTVALLSDFAE-SLNLADSIY 369

Query: 415 VTDD-NPRSEDPEKI-RAEIIHGIPGFIEKGNRI 446
           + D      E+   I   ++++ I       +  
Sbjct: 370 LCDIFGSVRENQGDITIQDLVNKIDNGASILSEE 403


>gi|145220114|ref|YP_001130823.1| UDP-N-acetylmuramate--L-alanine ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206278|gb|ABP37321.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 476

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALV 332
           G     + +    N     +  +G  +  F  PL G + + N L +  +    G+   + 
Sbjct: 250 GCDWTAQNIRVEENGSSFDLYYKGGFERRFNAPLFGSYNILNTLASIAVATLSGMTLDMT 309

Query: 333 LEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            E L +      R E VGT      +  D+AH   ++ + L+ I+     R I+      
Sbjct: 310 AEGLREFLRPKRRMETVGTYEGNITVIEDFAHHPTAIRVTLEAIKERWPERRIITCFEAR 369

Query: 393 DRDQGKRPIMGKIALDL--ADIAIV 415
                +     ++A     ADI ++
Sbjct: 370 SNTTTRNIFQKELAECFGPADIVVL 394


>gi|269956082|ref|YP_003325871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304763|gb|ACZ30313.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 59/402 (14%), Positives = 101/402 (25%), Gaps = 25/402 (6%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V S  +   D          + V         L   R  G  P   LAVTGT+GK++   
Sbjct: 74  VTSPGFKPSDPLLVAAGGAGVPVWSEVELAWRLRVDRAAGGGPAPWLAVTGTNGKTTTVE 133

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL--AKALSYLSSQGVTHVSVEA 189
            +  I   +GL +  +G   T    A  +       + L   +     +        +  
Sbjct: 134 MLASILSAAGLRTRAVGNVGTPLIEAALDPDLDVLAVELSSFQLHFAHTVAVQAGAILNL 193

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           +   LD H                R                     ++            
Sbjct: 194 AEDHLDWHGTMAAYGADKGRI-YERAERACVYNAADGATEHEVREADVADGARAVGFTLG 252

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 +         R                                +          
Sbjct: 253 APAPGMLGVVEDVLVDRAFHAPADAVDRLTYAAELGTLADL--------EHLAPGGSLPP 304

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL AA L  A G+ +A V + L        R + V        +    A  ++S 
Sbjct: 305 HVVANALAAAALARAHGVPAAAVRDGLRAFTPGGHRIQQVAALDGVTYVNDSKATNAHSA 364

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIA---IVTDDNPRSEDPE 426
                ++    +G ++ V    G   +G R    ++  D AD     +V   +P      
Sbjct: 365 AA---SLAGFPAGSVVWV---AGGLAKGAR--FDELVEDRADRLRAAVVIGVDPGPFTAA 416

Query: 427 KIRAEIIHGIPGFIEKGN---RIEAIRTAIEMLNKQDVLVVA 465
             R      +              A+  A  +    D +++A
Sbjct: 417 LGRHAPDVPVVVVDPGDTGTVMRRAVAAARSLAQPGDTVLLA 458


>gi|315653712|ref|ZP_07906632.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
 gi|315489074|gb|EFU78716.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
          Length = 460

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 113/393 (28%), Gaps = 52/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 IC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G      S                     L +     + VE SS
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVV------------------LKANANDLLVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L          +A         HIDYH+T + Y  AK+R+ +     +     +    
Sbjct: 176 FQL-MGVNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ +               Q  +        I  +   + +           +PG   
Sbjct: 235 ILEQELSLTKAHVVTFSEESTQADY-------YIGEQYLESQADHEIMKISDIKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +         +    +  +
Sbjct: 288 QQNSLVAIAISKLMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + +          V+   G DR       +  +        ++       E    +   
Sbjct: 348 AIPSFSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADA 396

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A ++ N  DVL+
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|262166568|ref|ZP_06034305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM223]
 gi|262026284|gb|EEY44952.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM223]
          Length = 269

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 76/262 (29%), Gaps = 19/262 (7%)

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
             NL  DH D     +A            L +  P           E +      GC   
Sbjct: 1   MNNLEFDHADIFDNLEAIK-----RQFHHLVRTVPGNGRILAPKQDEALADVFKRGCWSE 55

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +     +     +       Q   +    +     + L G+  V NAL+A      +G+ 
Sbjct: 56  TEFSGEQGEWQAEKITADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGVA 115

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVV 387
             L  E L        R E  G    G  +Y D+AH   ++E+ L  +R  +   +II V
Sbjct: 116 PELACEALGLFVNTKRRLELKG-EINGVAVYDDFAHHPTAIELTLGGLRNKVGDKKIIAV 174

Query: 388 FGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI---RAEIIHGIPG-FIEK 442
                     G        +L  AD   +         P  I     E+           
Sbjct: 175 LEPRSATMKLGVHKETLAASLHSADSVYLYQ-------PSNIPWSVEEVAKQCAQPAQVS 227

Query: 443 GNRIEAIRTAIEMLNKQDVLVV 464
            N  E +    +     D ++V
Sbjct: 228 ANMDEFVAMIAKEAKAGDQILV 249


>gi|269122885|ref|YP_003305462.1| UDP-N-acetylmuramate/alanine ligase [Streptobacillus moniliformis
           DSM 12112]
 gi|268314211|gb|ACZ00585.1| UDP-N-acetylmuramate/alanine ligase [Streptobacillus moniliformis
           DSM 12112]
          Length = 445

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 81/270 (30%), Gaps = 9/270 (3%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +       TN+  DH+++H + +    +  +  ++    +   +   D    +       
Sbjct: 168 MNPYYSIITNIEADHLEFHGSLENIKKSFGQFIKQ---TKYKVLACFDCEEIRTYSDDKL 224

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                      +                   +    +   F   +PG   V NAL    +
Sbjct: 225 VFYSVDEKNKDKVSIYAKNIHSLNSITYFDAVKNGIELGTFKLSIPGIHNVSNALAVIYI 284

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
                +D   V E +EK      R++ +       RI  DYAH    +   +   +    
Sbjct: 285 AHEEKLDMDNVKERIEKFRGANRRYQVIYDE--DFRIIDDYAHHPTEIMATINAAKMNEK 342

Query: 382 GRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSED--PEKIRAEIIHGIPG 438
             I V+F      R +       +    LAD   +      SE+   +    ++   I  
Sbjct: 343 KEITVIFEPHRYSRTKFFLKEFAESLA-LADRIFLLPIYSASEENTYDVSSEDLAKLIGN 401

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   + + +   +E   K  V +  G G
Sbjct: 402 HSKVYEKEKLVEILLEEDKKGKVYIFMGAG 431


>gi|319779535|ref|YP_004130448.1| Dihydrofolate synthase [Taylorella equigenitalis MCE9]
 gi|317109559|gb|ADU92305.1| Dihydrofolate synthase [Taylorella equigenitalis MCE9]
          Length = 426

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 54/382 (14%), Positives = 115/382 (30%), Gaps = 25/382 (6%)

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRL 162
                     ++ V GT+GK S  S+++ I  ++G    +      ++        +  +
Sbjct: 34  RLCLNLSNTKVITVAGTNGKGSTCSYLESIYYQAGYKVGKYTSPHLLNFNERIRINNKEV 93

Query: 163 TTPSPIYLAKALSYLSSQ----GVTHVSVEA----SSHGLDQHRLDGIKLIAGSFTNLGR 214
           T    +   + +  +          + ++ A    + + LD   L+          NL  
Sbjct: 94  TDKEIVEAFEFIEEIRGSISLSYFEYTTLAAFYIFNKNCLDVWVLEVGLGGRLDAVNLVD 153

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK-EVMKRAHNAGCRVLSVGYQ 273
                  +        +    E +  E   +  A+      + +                
Sbjct: 154 SDASIITSIDIDHTEFLGDTREKIGFEKAGVFRANKPAIIADPLPPQSIINYANKIGADL 213

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
             F       A   +      +  K       L G  Q+ NA  A     A+     + +
Sbjct: 214 WLFSRDFNYSADKQQWSFASRIGKKHALSHPSLRGANQLLNASAALACIDALKTFLPVPI 273

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGG 392
           + ++   V                + +D AH  +S   +  N+++++       VFG   
Sbjct: 274 QSIKIGLVDVHLSGRFEILPGQPTVVLDVAHNPHSAATLAHNLKSMSFFPYTYAVFGVLK 333

Query: 393 DRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIH-------GIPGFIEKGN 444
           D+D      +      + D   V D   PR     ++  ++         G+P F    +
Sbjct: 334 DKDLEG---IVLPLKGIVDYWYVCDLPGPRGSKSSEVVEKLKELLPPDSEGLPKFNMCLS 390

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             EA +       K+D ++V G
Sbjct: 391 PTEAYKEVKSKAKKEDRIIVFG 412


>gi|315179012|gb|ADT85926.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii NCTC 11218]
          Length = 456

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 112/359 (31%), Gaps = 35/359 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +   +LAV+GT GK++ +S +  + +  G    F +G        +     +    +   
Sbjct: 101 YDRWVLAVSGTHGKTTTSSMLAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 161 EYDSAFFDKRSKFV---------------HYHPRTLVMNNLEFDHADIFDDLEAIKR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    DA   +V++R   +         + +   + K       Q  
Sbjct: 205 HHLVRTVPGNGRILAPRQDAALADVLRRGCWSETEFSGEQGEWQAEKICK----DGSQFH 260

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +    +     + L GE  V NAL+       +G+   L  E L        R E  GT
Sbjct: 261 VLHQGERVGTVTWDLVGEHNVNNALMTIAAARHVGVTPDLACEALGSFINTKRRLELKGT 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
            + G  +Y D+AH   ++E+ L+ +R  +   +II V          G        +L  
Sbjct: 321 EN-GVTVYDDFAHHPTAIELTLEGLRNKVGDRKIIAVLEPRSATMKLGVHKETLAASLAA 379

Query: 410 ADIAIVTDDNPRSEDPEKI---RAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
           AD   +         P  I     ++           +   E +    +     D ++V
Sbjct: 380 ADSVYLFQ-------PSNIPWAVQDVADQCSQPAHVSDNMAEFVAQICQEAKPGDQILV 431


>gi|254435723|ref|ZP_05049230.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
 gi|207088834|gb|EDZ66106.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
          Length = 464

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 141/446 (31%), Gaps = 86/446 (19%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   PQ +  G + +VVSSA    +   +      I VV    + L+      YG    
Sbjct: 55  GHD--PQHVE-GCDVVVVSSAIDEDNTEVSAARGRLIPVVPRA-EMLAELMRFRYG---- 106

Query: 116 NILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  I  + +   +F IG    ++S   ++RL     +      
Sbjct: 107 --IAVAGTHGKTTTTSLIAGILGEANLDPTFVIG--GQVNSIGANSRLGKGEYLVAEADE 162

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       ++ +    TN+  DH+D +        A    F
Sbjct: 163 SDASFLL--------------------LQPLLAVITNVDADHMDAYGGDFTALKAAFLEF 202

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++           +       +   K      + QV   
Sbjct: 203 LHHLPFYGLAVVCLDDPVLRELLPGIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVARP 262

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +      +  LPG     NAL A  +   +GI  + +   L+    +  RF+  G  + 
Sbjct: 263 GKDNWLTVVLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIAT 322

Query: 355 GGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
                    DY H    L   L+ IR     R +VV        R +       ++    
Sbjct: 323 PAGKVLLVDDYGHHPRELAATLEAIRAGWPERRLVVIFQPHRYTRTRDLFEEFIRVLSQ- 381

Query: 410 ADIAIVTDDNPRSEDP---------------------------EKIRAEIIHGIPGFIEK 442
            D+ ++ +  P  E P                           E I   +          
Sbjct: 382 VDVLLLLEVYPAGEAPIGGADSRALWQAIQTHGQVSPILVEDKEIIGEML---------- 431

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
                      ++L + D+L+  G G
Sbjct: 432 ----------FDLLQEGDLLLTVGAG 447


>gi|332885570|gb|EGK05816.1| hypothetical protein HMPREF9456_02080 [Dysgonomonas mossii DSM
           22836]
          Length = 430

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 52/382 (13%), Positives = 102/382 (26%), Gaps = 32/382 (8%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           +       + + GT+GK S +  +  + Q+SG        TS      ++        I 
Sbjct: 41  HPHTKYKTIHIAGTNGKGSTSHLLAAVLQQSGYKVGLY--TSPHLVDFRERIRVNGEKIS 98

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG--------------SFTNLGRD 215
               L +++     +  ++ S   L                             TN+   
Sbjct: 99  KQYVLDFVTKHREAYEPIQPSFFELTMMMAFQYFADTNVDIAIIEVGLGGRLDSTNIITP 158

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
            +             +    E +  E   II  D        +          +      
Sbjct: 159 ILSIITNISFDHMQFLGNTLEKIAAEKAGIIKKDIPVIIGEAEEDVRKVFDDTAKRVGAP 218

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLF------PLPGEFQVYNALVAAGLCI--AIGI 327
            +  +    IH+  +           +                   L A          I
Sbjct: 219 IVFAEDEKLIHSSLRTASGWLYDTKYYQQLKGELSGYAQIKNTATVLCAIRELQKQGYII 278

Query: 328 DSALVLEHLEKLHVVPGRFEFVGT-NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            S  V      ++   G             +I  D  H    ++ I + +       + +
Sbjct: 279 PSKAVYNSFAYVNEYTGLMGRWQILQDYNPKIVCDTGHNEAGMKYISEQLVNERYDTLHI 338

Query: 387 VFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKGN 444
           + G   D+D      ++ K A+     A V    PRS +   ++   +  G+ G+     
Sbjct: 339 ILGMVNDKDISSVLSLLPKKAIYYFTKASV----PRSMNERSLQELAVKKGLTGYSY-PT 393

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
             EAIR A +     D + + G
Sbjct: 394 VKEAIRAAKDWATPSDFIFIGG 415


>gi|229552075|ref|ZP_04440800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539491|ref|YP_003173990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314508|gb|EEN80481.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151167|emb|CAR90139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           rhamnosus Lc 705]
          Length = 459

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 95/310 (30%), Gaps = 19/310 (6%)

Query: 155 SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGR 214
              Q           +   +S ++ +     ++ A         +  +       TN+  
Sbjct: 133 MLNQQWPHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQLCGIKTLHPHIAVLTNIYE 192

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
            H+D+H  +  Y  AKMR+     P +   + +       ++ K++             G
Sbjct: 193 AHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDL-PEMHQLAKQSQAQIVPFSRKQAAG 251

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
               L           +T   +         +PG   + NAL A       G+    + E
Sbjct: 252 ARASLID-------GWLTFDGDKIMPASDLQIPGLHNIENALAAIAAAKLKGVSDDAIRE 304

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L     V  R +++ T +         A    +  + L   +       IV    G DR
Sbjct: 305 VLRTFSGVKHRIQYLETINGRRVYNDSKATNVEAATVALNAFQQ-----PIVWLAGGLDR 359

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE 454
                 +   +   +  + +     P      KI  E   G+P   +  N + A+  A E
Sbjct: 360 GLPMDALTPLVKKHVKSMVVFGQTAPLM---AKIAKE--AGVP-VQKTENVMTAVPLAYE 413

Query: 455 MLNKQDVLVV 464
                DV+++
Sbjct: 414 ASRPGDVILL 423


>gi|227510170|ref|ZP_03940219.1| folylpolyglutamate synthase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190375|gb|EEI70442.1| folylpolyglutamate synthase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 19/226 (8%)

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +    H A  +   +   GK   +  +  I  +Q  +   +  +F+ L          +
Sbjct: 231 PLKVIEHTASGKKSPMTILGKQFTVNNLGMIDWEQHFSFKSDHDEFNDLSTGLIGDYQTD 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               A          +    +   +          GRFE     S    I +D AH  ++
Sbjct: 291 NAALAIQAYLNYCQLSSRPVNHNSVIAGIKQTKWGGRFER---ISDHPTIVIDGAHNISA 347

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN----PRSE 423
           ++ I+  +    + G++ V+ G   D+   K         +++   I+T  N      + 
Sbjct: 348 VDEIVDLLESNFSKGKVYVLMGILADKQADKMVEKMATVKNVS--IILTSFNGPGKRNAA 405

Query: 424 DPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
           DP+ +  ++              +   AI T  + L   D+L++ G
Sbjct: 406 DPQVLEEQVDSKENKKTVTDVIDDWQAAIDTIQKKLMTDDMLLITG 451


>gi|300361173|ref|ZP_07057350.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           JV-V03]
 gi|300353792|gb|EFJ69663.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           JV-V03]
          Length = 437

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 68/246 (27%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y  A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQDDYTRAFQSA----ADQTKKALFVWGDDKRLQSLK-- 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +             F  +         +   ++       F   L G+  + N      
Sbjct: 220 TDIPKYTYGFNDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHLFGDHSILNTTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + E L        RF     +     +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMEDIKEGLLTFKGAKRRF--AEKDFGDVSVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREASGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|77166311|ref|YP_344836.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani ATCC
           19707]
 gi|109892714|sp|Q3J790|MURC_NITOC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|76884625|gb|ABA59306.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosococcus oceani ATCC
           19707]
          Length = 476

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 141/446 (31%), Gaps = 86/446 (19%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH   PQ +  G + +VVSSA    +   +      I VV    + L+      YG    
Sbjct: 67  GHD--PQHVE-GCDVVVVSSAIDEDNTEVSAARGRLIPVVPRA-EMLAELMRFRYG---- 118

Query: 116 NILAVTGTSGKSSVASFVQQI-CQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             +AV GT GK++  S +  I  + +   +F IG    ++S   ++RL     +      
Sbjct: 119 --IAVAGTHGKTTTTSLIAGILGEANLDPTFVIG--GQVNSIGANSRLGKGEYLVAEADE 174

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
           S  S                       ++ +    TN+  DH+D +        A    F
Sbjct: 175 SDASFLL--------------------LQPLLAVITNVDADHMDAYGGDFTALKAAFLEF 214

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
              LP    A++  DD   +E++           +       +   K      + QV   
Sbjct: 215 LHHLPFYGLAVVCLDDPVLRELLPGIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVARP 274

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +      +  LPG     NAL A  +   +GI  + +   L+    +  RF+  G  + 
Sbjct: 275 GKDNWLTVVLNLPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIAT 334

Query: 355 GGRIY---VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDL 409
                    DY H    L   L+ IR     R +VV        R +       ++    
Sbjct: 335 PAGKVLLVDDYGHHPRELAATLEAIRAGWPERRLVVIFQPHRYTRTRDLFEEFIRVLSQ- 393

Query: 410 ADIAIVTDDNPRSEDP---------------------------EKIRAEIIHGIPGFIEK 442
            D+ ++ +  P  E P                           E I   +          
Sbjct: 394 VDVLLLLEVYPAGEAPIGGADSRALWQAIQTHGQVSPILVEDKEIIGEML---------- 443

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
                      ++L + D+L+  G G
Sbjct: 444 ----------FDLLQEGDLLLTVGAG 459


>gi|299135977|ref|ZP_07029161.1| FolC bifunctional protein [Acidobacterium sp. MP5ACTX8]
 gi|298602101|gb|EFI58255.1| FolC bifunctional protein [Acidobacterium sp. MP5ACTX8]
          Length = 473

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 76/223 (34%), Gaps = 21/223 (9%)

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
               R L  G++ +    + + +     +  +S++G+      PL G+ Q  N  +A   
Sbjct: 239 CLPPRELETGHRAQGPGFRGLSSPLAPNRYDLSIDGEILHIDSPLAGQHQQRNLALAVAT 298

Query: 322 CIAIGIDS-----ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            I +  +         +E   +    PGR E++ +      + +D AH       +   +
Sbjct: 299 AIELRTNHGFAISNAAIEQGVRATEWPGRLEWIPSRKGHAPLLLDVAHNPAGAWTLRAAL 358

Query: 377 RTITS-GRIIVVFGCGGDRDQGKRPIMGKIALDLA-----------DIAIVTD-DNPRSE 423
             +       ++F C  D+       M ++ L L            D  ++    NPR+ 
Sbjct: 359 AQLPEAMPRTLIFSCLADKQID---EMAQVLLPLFDSTSGDPARVRDHVVLAPIQNPRAA 415

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             + + A             +   A+  A  +   + V+V  G
Sbjct: 416 SVDDLLAAAHRLDVPAHAAPHLPGALAQAEAITPPEGVIVATG 458


>gi|169827840|ref|YP_001697998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992328|gb|ACA39868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 464

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 121/351 (34%), Gaps = 23/351 (6%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV   AY        I +   I+ V N  +    F      +    I+A+TGTSGK++ 
Sbjct: 62  VIVTDRAY----RPTEIPTKIIIIQVANVDEAYWKFVHFYRNQFHIPIVAITGTSGKTTT 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
              ++ I       +     +++ ++              L   L+              
Sbjct: 118 KEMIKHILSADRQVTATTLSSNSRTA-------------SLQYLLNIEDDTEAAVFETAV 164

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S G   +     K   G  TN+G  H++Y +T + Y  AK  + + + PK +  I    
Sbjct: 165 GSPGDVTNAGKYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLII--NA 222

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +  + + +  +   G  V    +         +          +    K +D   P  G+
Sbjct: 223 EDMNTKKLDISKFNGRLVKVGIHDSCHFRASHIQYYQKGMNFKLHHNRKTYDIFVPGFGQ 282

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            QVYNAL A      IG+   +    L+    +  + +     +    +   ++ T+ SL
Sbjct: 283 HQVYNALAAIAAAYEIGVPIPVAANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTSL 342

Query: 370 EMILKNIRTITSG-RIIVVFGCGGDR---DQGKRPIMGKIALDLADIAIVT 416
           E  LK +  +  G + I V G   D            G++   +    ++T
Sbjct: 343 EAALKVLNELGDGKKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLIT 393


>gi|317027508|ref|XP_001399435.2| tetrahydrofolylpolyglutamate synthase [Aspergillus niger CBS
           513.88]
          Length = 488

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 37/160 (23%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQG 397
           PGRFE +       + +VD AH + SL+   +    +T G       I++F     +D+ 
Sbjct: 316 PGRFEIIEDPDGQTQWFVDGAHNTLSLKKAAEWYSDLTKGSGLQKYRILIFSHFS-KDRD 374

Query: 398 KRPIMGKIALDLA------DIAIVTDDNPRSEDPEKIRAEII------------------ 433
              ++  +A  LA      D  I T    R ++  K+  + +                  
Sbjct: 375 GLALLECLAESLAERDALPDHVIFTTYIEREDELTKMDKDALPTSLLDLSVLPLFAEKWK 434

Query: 434 ----HGIPGFIEKGNRIEAIRTAIE-MLNKQDV--LVVAG 466
                 +     K    EAI TA      + +   +++ G
Sbjct: 435 ELFPQSMSSISTKETIEEAIETARSINAQQDNASQVLITG 474


>gi|134056344|emb|CAK47579.1| unnamed protein product [Aspergillus niger]
          Length = 489

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 37/160 (23%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCGGDRDQG 397
           PGRFE +       + +VD AH + SL+   +    +T G       I++F     +D+ 
Sbjct: 317 PGRFEIIEDPDGQTQWFVDGAHNTLSLKKAAEWYSDLTKGSGLQKYRILIFSHFS-KDRD 375

Query: 398 KRPIMGKIALDLA------DIAIVTDDNPRSEDPEKIRAEII------------------ 433
              ++  +A  LA      D  I T    R ++  K+  + +                  
Sbjct: 376 GLALLECLAESLAERDALPDHVIFTTYIEREDELTKMDKDALPTSLLDLSVLPLFAEKWK 435

Query: 434 ----HGIPGFIEKGNRIEAIRTAIE-MLNKQDV--LVVAG 466
                 +     K    EAI TA      + +   +++ G
Sbjct: 436 ELFPQSMSSISTKETIEEAIETARSINAQQDNASQVLITG 475


>gi|34540282|ref|NP_904761.1| folylpolyglutamate synthase [Porphyromonas gingivalis W83]
 gi|34396594|gb|AAQ65660.1| folylpolyglutamate synthase [Porphyromonas gingivalis W83]
          Length = 429

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 109/381 (28%), Gaps = 30/381 (7%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTP 165
           +       + V GT+GK S AS +  I Q +G+          +            +T  
Sbjct: 42  HPHKAYRTIHVAGTNGKGSTASTLAAILQVAGMRVGLFTSPHLVDFRERIRVNGICITEE 101

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR-------------------LDGIKLIA 206
             +   +    + +          +    D  R                    + I  I 
Sbjct: 102 YVVDFCERTREMVTTLHPSFFELTTMMAFDYFRHAQVDMALIEVGMGGRLDSTNIITPIL 161

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G+DH+ +                 +       +  A+         +A      
Sbjct: 162 SIITNIGKDHVQFLGDTPEKI--AFEKAGIIKSGVPVVVGRAEGGVRHAFQHKADEERTD 219

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++     G  I        +  Q         +   L        +  A+        + 
Sbjct: 220 IVFAQESGVIISSTLENGCYTYQTRDYGSVRGELTGLAQEENARTILCAVEVLSKRCGLN 279

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + S  V E    +  + G F      +   RI  D  H  +   +I + +R  T  ++ +
Sbjct: 280 LSSEHVREGFAHVTAMSGLFGRWQQLAEQPRIVCDTGHNEDGFRLITEQLRRQTYRQLRI 339

Query: 387 VFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VFG   D+D      ++ + A+     A V     R+   + +R +            + 
Sbjct: 340 VFGMVNDKDITAVLALLPREAVYYFTRASV----DRALPEDDLRQQAAAFGLVGNTYSSV 395

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            EA+  A    +  D + V G
Sbjct: 396 REALEAARREAHADDFIFVGG 416


>gi|167856476|ref|ZP_02479193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
 gi|167852399|gb|EDS23696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
          Length = 432

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 129/395 (32%), Gaps = 59/395 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   +L            + VV +              +    I+A+TG++GKS+V
Sbjct: 69  LIVISPGLALATAEIQQAIQAGVEVVGDIE--------LFCREAKAPIIAITGSNGKSTV 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +   ++ +++G+     G                   + L K    L         +E 
Sbjct: 121 TTLTTEMAKQAGVKVGMGGNIGVP-------------ALSLLKGDYEL-------YVLEL 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +K  A +  N+  DH+D +++ + Y  AK++++          I+  +
Sbjct: 161 SSFQLET--TYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIY----HHAENVIVNGE 214

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +                          K         ++    E         + G 
Sbjct: 215 DPQTFPEQAVGSLKK------------FAEKDAEYTACNGELYSGDEAVIAIDELKITGR 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL +  L  A G+D + +++ L+    +  RF+ V TN     I    A    S 
Sbjct: 263 HNVMNALASMSLAEATGVDRSGIVKALQSYSGLDHRFQLVPTNDGVRWINDSKATNVGST 322

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++    G + ++ G  G +D     +   I            D           
Sbjct: 323 VAALNGLQ--VEGTLYLLLGGDG-KDADFSELKPFINQPNTVCYCFGKDG---------- 369

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AE+    P  +      +A+      L   D++++
Sbjct: 370 AELAALTPNSVLVETMAQAVAQIRLRLKAGDMVLL 404


>gi|317496836|ref|ZP_07955166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895848|gb|EFV18000.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 454

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 87/277 (31%), Gaps = 16/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K    +  N+  DH+D H T + Y   K  + +     +   + Y
Sbjct: 164 EISSFQLET--IVDFKPDVCAVLNITPDHLDRHGTVEVYAQTKESIGKNQTKDQVMVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD         A  A   VL      K      +       +     +         L 
Sbjct: 222 EDD----TTRAMADRANGTVLFFSLHHKIKEGVSMEGDAFIIEENGKKQIVCTLDDVNLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N L A  +  ++G+  + + E +++   V  R E+V T               +
Sbjct: 278 GDHNYENILAAIAVTYSMGVPVSYIKEGIKRFKGVEHRIEYVDTVKGVAYYNDSKGTNPD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +K        R   + G G D+       +      + ++ ++    P+  D  K
Sbjct: 338 AAIKGIKA-----MNRPTWLIGGGYDKKSTYDEWIEAFDGKVKELILMGVTAPKIADCAK 392

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 HG        +  EA+          + +++
Sbjct: 393 -----THGFDKIKFVDSMEEAVSYIAGKAQDGEAVLL 424


>gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 441

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 106/310 (34%), Gaps = 42/310 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ +V +   +L          + I VV +         +    K    ++A+TG++GKS
Sbjct: 71  ADLVVTNPGIALATPEIQQVLASGIPVVGDI-----ELFAWDNDKP---VIAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V  +  Q    +GL     G                   + L +  + +         +
Sbjct: 123 TVTDWTGQALSAAGLDVAVGGNIGVP-------------ALDLLQHQADI-------YVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K     F NL  DH+D +++   Y NAK+R+F+    +   A   
Sbjct: 163 ELSSFQLET--TSSLKSKVAVFLNLSEDHMDRYRSMDDYRNAKLRIFDNADVRIVNA--- 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  +   +K +      +              V    + +  T+  +         L 
Sbjct: 218 --DDIATYPLKDSSYLEFSLDKKTDFA-------VTTQDDVEFFTLQGKKVLSTSEISLV 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N LV   L  ++G+D    L  ++    +  R + V  N     +    A    
Sbjct: 269 GRHNVSNCLVVLALLHSVGVDIERALPVIKSYSGLTHRCQVVLDNGGIKWVNDSKATNLA 328

Query: 368 SLEMILKNIR 377
           S +  L  +R
Sbjct: 329 STKAALTGLR 338


>gi|167765846|ref|ZP_02437899.1| hypothetical protein CLOSS21_00337 [Clostridium sp. SS2/1]
 gi|167712563|gb|EDS23142.1| hypothetical protein CLOSS21_00337 [Clostridium sp. SS2/1]
 gi|291559201|emb|CBL38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SSC/2]
          Length = 454

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 87/277 (31%), Gaps = 16/277 (5%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +   K    +  N+  DH+D H T + Y   K  + +     +   + Y
Sbjct: 164 EISSFQLET--IVDFKPDVCAVLNITPDHLDRHGTVEVYAQTKESIGKNQTKDQVMVLNY 221

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD         A  A   VL      K      +       +     +         L 
Sbjct: 222 EDD----TTRAMADRANGTVLFFSLHHKIKEGVSMEGDAFIIEENGKKQIVCTLDDVNLL 277

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N L A  +  ++G+  + + E +++   V  R E+V T               +
Sbjct: 278 GDHNYENILAAIAVTYSMGVPVSYIKEGIKRFKGVEHRIEYVDTVKGVAYYNDSKGTNPD 337

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    +K        R   + G G D+       +      + ++ ++    P+  D  K
Sbjct: 338 AAIKGIKA-----MNRPTWLIGGGYDKKSTYDEWIEAFDGKVKELILMGVTAPKIADCAK 392

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 HG        +  EA+          + +++
Sbjct: 393 -----THGFDKIKFVDSMEEAVSYIAGKAQDGEAVLL 424


>gi|254520544|ref|ZP_05132600.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
           7_2_43FAA]
 gi|226914293|gb|EEH99494.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
           7_2_43FAA]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 108/358 (30%), Gaps = 43/358 (12%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                   +  +TG+ GK++  + + ++ + +G  ++  G   T      +         
Sbjct: 111 FVRYCKGKVYGITGSDGKTTTTTIISKLLEEAGYKTWVGGNIGTPLFSNIEEIR------ 164

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                           V +E SS  L       + +     TNL  +H+D H   Q Y +
Sbjct: 165 ------------EEDKVVLELSSFQL---MTMDVPVDIAVVTNLAPNHLDMHLDMQEYID 209

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           AK              +    D       +     G    + G   +F   +++      
Sbjct: 210 AKKN----------IFLYQDKDGVLILNRENEITHGFVPEAKGIVKEFSSKREIENGAYL 259

Query: 289 QQVTISVEGKDFDFLFPL-PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE 347
           +   + +E         +           +AA L     +   ++ +  E+   V  R E
Sbjct: 260 KDNMLYLENNIVCEKENIAIKGIHNIENYLAAFLATKDDVSIDVMKKVAERFGGVEHRCE 319

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL 407
            V             A +       L         + +++   G D+     P+  +   
Sbjct: 320 LVREIDGVKYYNDSIASSPTRTLAGLFAFD-----KKVILIAGGYDKHIPFEPL-AEEGY 373

Query: 408 DLADIAIV--TDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVL 462
                 I+     N   +   K++ E   GI   I   +   EA+  A ++ ++ DV+
Sbjct: 374 PYIKELILLGATKNLIKDAFVKLKEE--KGIEVSISLVDTLEEAVFKAKDLADEGDVV 429


>gi|238060247|ref|ZP_04604956.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237882058|gb|EEP70886.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 488

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 15/274 (5%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH++ +        A    F  L  +    +  ADD   + + +     
Sbjct: 188 PYLSLITNIEADHLNTYGDLATLE-AAFAEFARLTDRRGFIVTCADDPGGRRLAQTLRAE 246

Query: 264 GCRVLSVGYQGKFI-HLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGL 321
           G RV + G        L ++ +     +    ++G+   +F  P+PG     N+  A   
Sbjct: 247 GRRVHTYGEAADADLRLSEIVSSAQGVRYLAEIDGRSLGEFRLPVPGRHMGLNSASAVLT 306

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT- 380
              +G+        L     V  RFE  G    G  +Y +YA+   S+ + L+ +R +  
Sbjct: 307 AYLLGLPVEAAEAALAAFPGVRRRFERKGVAD-GVLVYDEYAYHPTSMTLALQTLREVAG 365

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDD-NPR-----SEDPEKIRAEI 432
            GR+IVVF     R    R +  +IA  L  AD  ++ +   P       E    +   +
Sbjct: 366 DGRLIVVFQPY--RLYRTRDLQAEIAAALGIADELVLLEVFGPGEVRQPGEGSAALVEAV 423

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                  +  G+  +            DV+V  G
Sbjct: 424 PLPADRKVFVGSWDDVPVEVARRARPGDVVVTMG 457


>gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
 gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
          Length = 215

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/215 (5%), Positives = 30/215 (13%), Gaps = 8/215 (3%)

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +           +  G  + I  +         + ++    +           +     
Sbjct: 4   CIYWWWWIFTCLHWCWGIFTCIHWWWW-----IFTCLHWCWGIFTCIHWWWWIFTCLHWC 58

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
            G+         +        G     +                  +             
Sbjct: 59  WGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWC 118

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE---GKDFDFLFPLPG 308
           +               L    +G    L  +                      + +    
Sbjct: 119 WGIFTCIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTC 178

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
               +        C  I             LH   
Sbjct: 179 LHWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWCW 213



 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 9/196 (4%), Positives = 25/196 (12%), Gaps = 5/196 (2%)

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           L       +                             +  +               F  
Sbjct: 15  LHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTC 74

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC-----RVLSVGYQGKFIHLKKVCA 284
               +           I+    +   +    H               +            
Sbjct: 75  LHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTC 134

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
           +H   +  + +    +            +           I             +H   G
Sbjct: 135 LHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWCWGIFTCVHWCWG 194

Query: 345 RFEFVGTNSRGGRIYV 360
            F  +           
Sbjct: 195 IFTCIHWWWWIFTCLH 210



 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/211 (3%), Positives = 24/211 (11%), Gaps = 15/211 (7%)

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                    +      G+         +        G     +      ++     L   
Sbjct: 4   CIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHW-----WWWIFTCLHWC 58

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                     +                               +             +   
Sbjct: 59  WGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWC 118

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
              F         +  +                  +         V   +          
Sbjct: 119 WGIFTC-----IHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWW 173

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            I+     T       +        G    +
Sbjct: 174 WIF-----TCLHWCWGIFTCVHWCWGIFTCI 199



 Score = 36.8 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 12/163 (7%), Positives = 26/163 (15%)

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
              ++            +                            +  +          
Sbjct: 2   FTCIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 61

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              I      F  L    G F   +       C+         +     +         +
Sbjct: 62  FTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 121

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG 392
            T            H  +  ++ +        G    V  C G
Sbjct: 122 FTCIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWG 164



 Score = 36.8 bits (83), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/194 (5%), Positives = 24/194 (12%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           +                          ++     L             +           
Sbjct: 1   IFTCIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWG 60

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                               +             +      F  +      F   +    
Sbjct: 61  IFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWG 120

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
              CI         L    +  +      +          +     T       +     
Sbjct: 121 IFTCIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLH 180

Query: 379 ITSGRIIVVFGCGG 392
              G    V  C G
Sbjct: 181 WCWGIFTCVHWCWG 194


>gi|154707683|ref|YP_001424339.1| dihydrofolate synthase [Coxiella burnetii Dugway 5J108-111]
 gi|154356969|gb|ABS78431.1| folylpolyglutamate synthase [Coxiella burnetii Dugway 5J108-111]
          Length = 416

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 110/375 (29%), Gaps = 29/375 (7%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                 ++ V GT+GK SV   ++ I   +G           +    +      P+   L
Sbjct: 33  NNFACPVVTVAGTNGKGSVVKSLESIYLAAGYKVAAYTSPHLLQFNERLRLNGEPATDEL 92

Query: 171 AKALSYLSSQGVTHVSV-EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ-QAYFN 228
                        H  +       L    +   + +      +G           +    
Sbjct: 93  FIEAFKFIEDNRNHQPLSFFEFTTLAIFYICKKQNLDILLLEVGLGGRLDAVNIVEPDVA 152

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
               +  +                +  + +     G          + +HL +      +
Sbjct: 153 VITTIDIDHTDWLGEDRESIGREKAGIIRRHKPVIGGDPNLPNSVYEQVHLLEAPFYQLE 212

Query: 289 QQVTISVEGKDFDFLFPL----------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           +        +++ +  P                +  +L+      +    S   L    K
Sbjct: 213 KDFFAVSTKENWQWQGPTQDYQGLPLPSLKIENIATSLMVIHRLQSQLPVSQHSLIAGIK 272

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQ- 396
             V+PGRFE          I  D AH   +   + + +R     GR + V G   D+D  
Sbjct: 273 NAVLPGRFE---WIQTPAPIVFDVAHNPQATAYLSEQLRKTDHAGRTLGVVGMLRDKDIP 329

Query: 397 -GKRPIMGKI----ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
              +P++  I    A  L++    T  N      + + +E+   +    +  +  +A + 
Sbjct: 330 GALKPMLPCIDQWYAGTLSESRGATSAN-----LQNVLSELQ--VENCYDFDSVADAFKK 382

Query: 452 AIEMLNKQDVLVVAG 466
           A+E    QD +VV G
Sbjct: 383 AVEDCRPQDRIVVFG 397


>gi|114564953|ref|YP_752467.1| UDP-N-acetylmuramate--alanine ligase [Shewanella frigidimarina
           NCIMB 400]
 gi|122298413|sp|Q07WI6|MURC_SHEFN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114336246|gb|ABI73628.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella frigidimarina
           NCIMB 400]
          Length = 485

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 6/202 (2%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D +             F   LP    A++  DD   +E+M R 
Sbjct: 185 HLQPMVSVITNIEADHMDTYGGDFEKLKTTFVDFLHNLPFYGVAVMCIDDEVIREIMPRI 244

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLFPLPGEFQVYNALVAA 319
                                     ++   T+   GKD  D +  LPGE  V NAL A 
Sbjct: 245 GRQVVTYGFSEEADV--QAINFAQNGHQSSFTVKRHGKDNVDIVLNLPGEHNVLNALAAI 302

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
            +     ID + +++ L +   +  RF+ +G          +  DY H  + +   +K  
Sbjct: 303 AVASEDDIDDSAIVQALAEFEGIGRRFQHLGEFETPNGSVMLVDDYGHHPSEVLATIKAA 362

Query: 377 RTITSGRIIVVFGCGGDRDQGK 398
           R     + +V+        + +
Sbjct: 363 RAGWPDKRLVMAYQPHRYSRTR 384


>gi|323692885|ref|ZP_08107110.1| hypothetical protein HMPREF9475_01973 [Clostridium symbiosum
           WAL-14673]
 gi|323503060|gb|EGB18897.1| hypothetical protein HMPREF9475_01973 [Clostridium symbiosum
           WAL-14673]
          Length = 427

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 46/374 (12%), Positives = 105/374 (28%), Gaps = 30/374 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     ++   I+ VTGT+GK SV + ++ +   +G  +                    
Sbjct: 29  LALLGDPQNELKIIHVTGTNGKGSVCTMLESVLGAAGYKTGLFTSPYIRKMNECIRLDKQ 88

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P        +          +    +   +       +         +    +       
Sbjct: 89  PISDESFCDIINFIRPLADAMEDRPTEFEILSAAAMKVFHQKKCDVVICETGMGARLDAT 148

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                 +      +  +    +                 GC V+  G +     + +  A
Sbjct: 149 NTMKETLASVIVNVELDHMGFLGDTIEKIAFEKAGVIKQGCPVIFGGARENARQVIEEQA 208

Query: 285 IHNKQQVTI----------------SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
              K ++T+                + + K++  +          +    A   I++  +
Sbjct: 209 KARKAKLTMVDYSALENVRTDLGGCTFDFKEYRDIRLSLPGLYQPSNGAVALTVISVLKE 268

Query: 329 SA-----LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
                    +    +    P RFE +           D AH    + + + +IRT   G+
Sbjct: 269 RGLAISGDAVRSGMQSVSWPARFETIIKEPL---TIYDGAHNMAGITVAVDSIRTYFDGQ 325

Query: 384 IIVVF-GCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIH-GIPGFI 440
            + +F G   D++      M ++     +    VT  NPR+   E++       G+    
Sbjct: 326 KVNIFMGVMADKEYD---AMIELLKPYTNAVYTVTPANPRALPAERLADCFRKHGVRKAE 382

Query: 441 EKGNRIEAIRTAIE 454
                 +A   A++
Sbjct: 383 AFDTLRDAAECALK 396


>gi|323483882|ref|ZP_08089258.1| hypothetical protein HMPREF9474_01007 [Clostridium symbiosum
           WAL-14163]
 gi|323402781|gb|EGA95103.1| hypothetical protein HMPREF9474_01007 [Clostridium symbiosum
           WAL-14163]
          Length = 428

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 48/374 (12%), Positives = 96/374 (25%), Gaps = 30/374 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A     ++   I+ VTGT+GK SV + ++ I   +G  +                    
Sbjct: 29  LALLGDPQNELKIIHVTGTNGKGSVCTMLESILGAAGYKTGLFTSPYIRKMNECIRLDKQ 88

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
           P        +          +    +   +       +         +    +       
Sbjct: 89  PISDESFCDIINFIRPLADAMEDRPTEFEILSAAAMKVFHQKKCDVVICETGMGARLDAT 148

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVG------------- 271
                 +      +  +    +                 GC V+  G             
Sbjct: 149 NTMKETLASVIVNVELDHMGFLGDTIEKIAFEKAGVIKQGCPVIFGGARENARQVIEEQT 208

Query: 272 -------YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIA 324
                      +  L+ V                    L  L        AL    +   
Sbjct: 209 KARKAKLTMVDYNALENVRTDLGGCTFDFKEYRDIRLSLPGLYQPSNGAVALTVISVLKE 268

Query: 325 IGIDSA-LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGR 383
            G+  +   +    +    P RFE +           D AH    + + + +IRT   G+
Sbjct: 269 RGLAISGDAVRSGMQSVSWPARFETIIKEPL---TIYDGAHNMAGITVAVDSIRTYFDGQ 325

Query: 384 IIVVF-GCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIH-GIPGFI 440
            + +F G   D++      M ++     +    VT  NPR+   E++       G+    
Sbjct: 326 KVNIFMGVMADKEYD---AMIELLKPYTNAVYTVTPANPRALPAERLADCFRKHGVRKAE 382

Query: 441 EKGNRIEAIRTAIE 454
                 +A   A++
Sbjct: 383 AFDTLRDAAECALK 396


>gi|256825186|ref|YP_003149146.1| UDP-N-acetylmuramyl tripeptide synthase [Kytococcus sedentarius DSM
           20547]
 gi|256688579|gb|ACV06381.1| UDP-N-acetylmuramyl tripeptide synthase [Kytococcus sedentarius DSM
           20547]
          Length = 725

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 11/132 (8%)

Query: 342 VPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNIR--TITSGRIIVVFGCGGDRDQG 397
            P R          G   +  D AH    +E +L+      +    I +  G  GDR   
Sbjct: 403 NPARMNTYRWRVADGWATIVCDLAHNEAGVEAVLEVADGLRLPGSDIHITLGGLGDRTDE 462

Query: 398 KRPIMGKIALDLADIA-IVTDDN-PRSEDPEKIRAEIIHGIPGFIEK-----GNRIEAIR 450
               MG IA   AD   +VT D+  R    + +   +  G+            + + A+ 
Sbjct: 463 ILESMGVIAGRGADKTHLVTKDHYLRGRTADDVFGHMRAGLASVGAVPAATWPDEVSAMA 522

Query: 451 TAIEMLNKQDVL 462
              E+L+  DVL
Sbjct: 523 GVTELLHDGDVL 534


>gi|330966229|gb|EGH66489.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 434

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 98/374 (26%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPARRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY-------------LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
              ++                 G            LD   L+          NL    + 
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFERAQLDAVVLEVGLGGRLDAVNLIDSDLA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDA--YSKEVMKRAHNAGCRVLSVGYQGKF 276
              +        +    E +  E   I  A                   R L      + 
Sbjct: 158 LVTSIGVDHTEYLGDTRESVAFEKAGIFRAGCPALCGDPSPPEPLLTKARELGCPLLVRG 217

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
                     +     ++   +      PL        AL      +         +  +
Sbjct: 218 RDFDLSIGDDSWDWRGVAHGEQVALRGLPLLDLPMQNAALGLQAFALLGYPLQTDAIGQV 277

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                + GR +       G ++ +  D  H  ++   + + + R    G+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVRWHGKQLNLLLDVGHNPHAAHFLQQRLARRPVPGKRFAVFGLLND 337

Query: 394 RDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D       +  +    A   + T    RS   E++ + + +         +  +A+   
Sbjct: 338 KDLDGVVSHLAPVIAGWAVTPLSTS---RSRPAEELHSALQNLGARVTSYQSVAQALDAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|311895540|dbj|BAJ27948.1| putative UDP-N-acetylmuramoylalanine--D- glutamate ligase
           [Kitasatospora setae KM-6054]
          Length = 480

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 134/414 (32%), Gaps = 50/414 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           G   +V S  ++         +   + V  +      L A       P   LAVTGT+GK
Sbjct: 74  GTALVVTSPGWAPDGPLFAAAAAAGVPVWGDVELAWRLRAPHPATGEPAPWLAVTGTNGK 133

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
           ++    +  I   +G  +  +G                     +    + L+ +    ++
Sbjct: 134 TTTVQMLASILTAAGKRTAAVGNVG------------------VPVLDAVLAEEPYDVLA 175

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           VE SS+ L       +++ +G+  NL  DH+D+H + +AY  A  +       + +    
Sbjct: 176 VELSSYQLHW--APSLRVHSGAVLNLAPDHLDWHGSMEAY--AAAKGRIYEGNQVACVYN 231

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---- 302
            AD A    V +     GCR +  G     +    V       +  ++            
Sbjct: 232 LADPATEALVREADVEEGCRAVGFGLDAPSVSNLGVVDGLLVDRAFVADRANSAAELGAV 291

Query: 303 -LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                P    + NAL AA L  A G+D+  V + L        R   V        +   
Sbjct: 292 ADVNPPAPHNIANALAAAALARAYGVDAKAVRDGLRAFTPDAHRIAHVAEIDGVAYVNDS 351

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
            A  +++    L         R +V    G  +      ++   A  L    ++      
Sbjct: 352 KATNTHAAAASLAAY------RPVVWIAGGLAKGATFDELVAAAAPRLRAAVLI------ 399

Query: 422 SEDPEKIRAEIIHGIPGFIEKG-----NRIEAIRTAI-----EMLNKQDVLVVA 465
            +D   IR  +    P              EA+ TAI         K D +++A
Sbjct: 400 GQDRGLIREALERHAPEVPVLEPAPGQTGAEAM-TAIVAAAAAAAEKGDTVLLA 452


>gi|24374589|ref|NP_718632.1| FolC bifunctional protein [Shewanella oneidensis MR-1]
 gi|24349199|gb|AAN56076.1|AE015743_4 FolC bifunctional protein [Shewanella oneidensis MR-1]
          Length = 431

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 108/366 (29%), Gaps = 23/366 (6%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P  ++ V GT+GK +  + ++ I + SGL+         +    +              A
Sbjct: 57  PSKVVTVGGTNGKGTTCAMLENILRLSGLTVGVYSSPHMLKYNERVRINGQDQSDEAFVA 116

Query: 174 LSYLSSQGVTHVSVEASSHG------------LDQHRLDGIKLIAGSFTNLGRDHIDYHQ 221
                     ++S+    +             LD   L+         TN+    I    
Sbjct: 117 AFEQIEAARGNISLTFFEYATLAGLILFKAAKLDVVILEVGLGGRLDATNMIDADISAVT 176

Query: 222 TQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
           +      A +    EL+ +E   I          ++   +            G  ++   
Sbjct: 177 SVDLDHEAYLGNTRELVGREKAGIFRQGKPA---IVGEPNLPHTVNDVAQQLGAKLYRVG 233

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
               + +   T   +G+                 ++A          +A ++        
Sbjct: 234 TEFTYQQNGHTWDYQGQVLKLKQLSLPTLPNAATVIAIVE-HGWPEIAADIIAKGISSAR 292

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRP 400
           + GR E V        I +D AH  ++   ++K +  I +G+ +  + G   D+D G   
Sbjct: 293 LTGRLEQVSEQPL---ILLDVAHNPHAARFLVKQLTPIVAGKRVFALCGMLKDKDIGG-- 347

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
            +  +   L D   +            +  + +       E  +   A       +   D
Sbjct: 348 -VLPVVSPLIDTWYLVSLQGERGAHASLLRQTLTQETKACEFEDIATAWTALKAQIQPDD 406

Query: 461 VLVVAG 466
           V++V G
Sbjct: 407 VVIVFG 412


>gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 464

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 122/338 (36%), Gaps = 19/338 (5%)

Query: 83  SATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGL 142
            + I  +  ++ V N  +    F      +    I+A+TGTSGK++    ++ I      
Sbjct: 71  PSDIPDHVMLIQVANAEEAYWKFVHFYRSQFHIPIVAITGTSGKTTTKEMIKHILSADRK 130

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            +     +++ ++              L   L                S G   +     
Sbjct: 131 VTATTLSSNSRTA-------------SLQYLLGIEDDTEAAVFETAVGSPGDVTNAGRYF 177

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
           K   G  TN+G  H++Y +T + Y  AK  + + + PK +  I    +  + + +  +  
Sbjct: 178 KPTIGIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPKGTLII--NAEDMNTKKIDVSRF 235

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
            G  +    +         +       +  +  + K +D L P  GE QVYNAL A    
Sbjct: 236 RGRLIKVGKHDSCDFRASHIHYYQKGMKFILHHDRKSYDILVPGFGEHQVYNALAAIAAV 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
             +G+   +  + L+   ++  + +     +    +   ++ T+ SLE  LK +  +  G
Sbjct: 296 HDMGMPIPVAAKQLQSFRLLKKQLQLFEGINHSMLLDDTWSITTTSLEAALKVLNELGDG 355

Query: 383 -RIIVVFGCGGDR---DQGKRPIMGKIALDLADIAIVT 416
            + I V G   D            G++   +    ++T
Sbjct: 356 KKKIAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLIT 393


>gi|237751715|ref|ZP_04582195.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
 gi|229373081|gb|EEO23472.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
          Length = 494

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 126/373 (33%), Gaps = 39/373 (10%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R +     ++L       I+A+TG+ GK+S+ +F+ QI Q+           +T      
Sbjct: 148 RIYAKKAHNKLQQLQNLKIIAITGSYGKTSIKNFIAQILQQQFSVYATPRSVNTYKGLVA 207

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D      +   +  A +             A   G  +   + ++        +G  HI+
Sbjct: 208 DINQNINATHEIYIAEA------------GARQVGDIKEIAELLQHHYAVIGKIGHAHIE 255

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y +  +     K  L        +                                    
Sbjct: 256 YFKNIETTTKTKFELLYSTRLTHAFVQKDNS-------YANVLPPQFEANMKKIVAYPPK 308

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           LK + +   K   ++ ++     F   + G F + N  VA  +   +G+D   + + + K
Sbjct: 309 LKDIESTLEKTSFSLELDSVFVPFTCKILGRFNIDNIAVAIMIAKTLGMDINALQKAVAK 368

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           L  +P R + +   ++   I   +      +   ++ + ++ +GR I+V     + D+  
Sbjct: 369 LTPIPHRLQRI-DTAQKVIIDDSFNGNLEGMSEAIR-LASLHNGRKIIVTPGLVEHDEAS 426

Query: 399 RPIMGKIALDLADIAIVTDD-NPRSED-----PEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
              + +    + DIAI+T D N +  D     P+KI   I+       E           
Sbjct: 427 NIELAQKIDKVFDIAIITGDLNAKILDTHITTPQKI---ILKDKTKLEEIL--------- 474

Query: 453 IEMLNKQDVLVVA 465
            E   + D+++ A
Sbjct: 475 AESGKQNDLVLFA 487


>gi|332524305|ref|ZP_08400527.1| FolC bifunctional protein [Rubrivivax benzoatilyticus JA2]
 gi|332107636|gb|EGJ08860.1| FolC bifunctional protein [Rubrivivax benzoatilyticus JA2]
          Length = 427

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 56/374 (14%), Positives = 97/374 (25%), Gaps = 27/374 (7%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-SPIYL 170
           +    ++ V GT+GK S  + ++ I  ++G           +    +      P     L
Sbjct: 40  EFTMPLIVVAGTNGKGSTCAMLESIAMQAGYRVGLYQKPELVHFTERCRVDGRPVDADAL 99

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKL-----------IAGSFTNLGRDHIDY 219
                 +          +     L   RL  +                   N        
Sbjct: 100 LPHFDAVEQARGDITLTKFEFTTLAIARLLSLAPLDLVILEVGLGGRYDAVNAFDADCTV 159

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMKRAHNAGCRVLSVGYQGK 275
             +        +    E +  E   ++                   +A      +   G+
Sbjct: 160 ITSIDLDHTEFLGPDRESIGFEKAHVMRTGRPAIVGDPLPPASVVDHAREIGADLWLAGR 219

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
                      N         G  +  L           AL A          +A  +  
Sbjct: 220 DFRHDGDRQQWNWAGRGRRYNGLGYPALRGANQLLNASAALAAFESLRERLPITAQAVRT 279

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDR 394
              L  +PGRF+ V        + +D AH   S+  +  N+  +    R   VFG   D+
Sbjct: 280 GLALVDLPGRFQVVPGQPA---LVLDVAHNPQSVAALALNLDAMGFYPRTRAVFGAMRDK 336

Query: 395 DQGKRPIMGKIAL--DLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           D       G +A    L D   V              A ++             EA+R A
Sbjct: 337 DIA-----GALAKIRPLIDEWHVCALPTARAATADELAAVLGDTTPVHRHATPSEALRAA 391

Query: 453 IEMLNKQDVLVVAG 466
           +   +  D +VV G
Sbjct: 392 LAASDPADRIVVFG 405


>gi|304384668|ref|ZP_07367014.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus acidilactici
           DSM 20284]
 gi|304328862|gb|EFL96082.1| UDP-N-acetylmuramate--L-alanine ligase [Pediococcus acidilactici
           DSM 20284]
          Length = 443

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 90/348 (25%), Gaps = 44/348 (12%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V++      D     R+    L V    +FL    +          + V GT GK+S   
Sbjct: 72  VIAGNAFTDDHPEIKRAREMGLKVVRYHEFLGQLLAAYTS------IGVAGTHGKTSTTG 125

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +              G   T            P   +            + +       
Sbjct: 126 LLA---------HVLGGVDKTSYLIGDGTGKGVPDARFFVFEADEYRRHFIAY------- 169

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                             TN+  DH DY++      +A  +   ++              
Sbjct: 170 -----------HPDYMIMTNVDFDHPDYYKDLADVESAFQQAASQVKKGLFAWGEDTS-- 216

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K   +             F     V      +            F   L GE  
Sbjct: 217 ----LRKLHADVPVYYYGTADNDDFQAKNIVRTTTGSEFDVEHRGEPIGHFKINLFGEHN 272

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L    +     ID ALV + L     V  RF    +      +  DYAH  + ++ 
Sbjct: 273 VLNTLAVIAVAYFEKIDLALVQKELLSYQGVKRRF--SKSTVGDNILIDDYAHHPSEIKA 330

Query: 372 ILKNIR-TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
            L   R      +I+ VF      R         K    LAD  ++T+
Sbjct: 331 TLDAARQEFPDKKIVAVFQPHTYTRTAALLDGFAKSLS-LADQVVLTE 377


>gi|302391316|ref|YP_003827136.1| FolC bifunctional protein [Acetohalobium arabaticum DSM 5501]
 gi|302203393|gb|ADL12071.1| FolC bifunctional protein [Acetohalobium arabaticum DSM 5501]
          Length = 429

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRP 400
            PGR E +G       + +D AH     + + + I+  +    +I+V G   D+D     
Sbjct: 291 WPGRLELLGE---NPLVILDGAHNPAGAKELGRVIKEDLDYEELILVLGILADKDIE--- 344

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M  I   LAD  I+T + N R+ DP ++   +              +A + AIE+    
Sbjct: 345 QMLDILTPLADKIILTKNTNKRASDPYEVAKVLEDRGKDVEVVPKVAQAAQQAIEIAAPA 404

Query: 460 DVLVVAG 466
           D++ ++G
Sbjct: 405 DLISISG 411


>gi|257487523|ref|ZP_05641564.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|330891454|gb|EGH24115.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. mori str. 301020]
 gi|331012650|gb|EGH92706.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 434

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 108/374 (28%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY--------LSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHID 218
              ++          +     +   A+    +Q RLD + L           NL      
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADFA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFI 277
              +        +    E +  E   I  A         +       +   +G       
Sbjct: 158 LVTSIGVDHAEYLGNTRESVAFEKAGIFRAGCPALCGDPEPPEPLLAKARELGCPLLMRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +    +         G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGKDSWDWRGVAHGEQVELRGLPLLDLPMQNAALALQAFALLGYPLQTDAVGQV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +    + +G R+ +  D  H  ++ + + + + R    G+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVSWQGKRLNLLLDVGHNPHAAQFLEQCLARQPVVGKRRAVFGLLND 337

Query: 394 RD-QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D +G    +  +  + A   + T  +  +E+       +   +  +        A+   
Sbjct: 338 KDLEGVVAHLVPVIDEWAVAPLPTSRSRPAEELHSALQNLGACVTSYQSV---ALALEAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|227327090|ref|ZP_03831114.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 486

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 130/423 (30%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA +  +       +   P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVI-----RRAEMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQ 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E++ R                 I             +    +       
Sbjct: 227 AVMCIDDAVIRELLPRVGRHITTYGFSDDADVRISGYHQTGAQGHFTLERKDKP-LLTVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  A  +    GID   +L  LE+      RF        E V   S  
Sbjct: 286 LNAPGRHNALNAAAAVAVATDEGIDDDAILRALERFQGTGRRFDFLGEYPLELVNGQSGT 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + +V+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPNKRLVMIFQPHRYTRTRDLYDDFAHVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         + L  +D+++V G
Sbjct: 405 LMLDVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTDVDTLPELLSQALRGEDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|330836865|ref|YP_004411506.1| FolC bifunctional protein [Spirochaeta coccoides DSM 17374]
 gi|329748768|gb|AEC02124.1| FolC bifunctional protein [Spirochaeta coccoides DSM 17374]
          Length = 460

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 13/132 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPI 401
           PGRF+ +     G  +Y+D AHT NSL  ++ + + I    +  V++G   D+D      
Sbjct: 306 PGRFQVL--AGCGTPLYIDGAHTVNSLTRLMHSFKEIHDETKTTVIYGALLDKDHDH--- 360

Query: 402 MGKIALDLADIAIV-TDDNPRSEDPEKIRAEIIHGI------PGFIEKGNRIEAIRTAIE 454
           M +I L+ A   IV T  + +  DP+ + A               +   +  +A+  A  
Sbjct: 361 MTRIILETAHTIIVSTPGHFKKSDPDALYATFRKNAQDMGRDSDILLIKDARDALEEAFR 420

Query: 455 MLNKQDVLVVAG 466
           +  +   ++  G
Sbjct: 421 ITPQDGAILSCG 432


>gi|325925686|ref|ZP_08187064.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
 gi|325543902|gb|EGD15307.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas perforans
           91-118]
          Length = 477

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 137/431 (31%), Gaps = 52/431 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V     + + T+ +         
Sbjct: 224 LLCIDDPEVAALAGKTPRH--VMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LE    +  RF    E   ++    R+ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSSGARVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVAGKGHE 470
             P  E P                  +    +     +           D+L++ G G  
Sbjct: 401 VYPAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDI 460

Query: 471 TV---HIVTNG 478
                HI+ NG
Sbjct: 461 GYVAQHIINNG 471


>gi|163733056|ref|ZP_02140500.1| folC bifunctional protein [Roseobacter litoralis Och 149]
 gi|161393591|gb|EDQ17916.1| folC bifunctional protein [Roseobacter litoralis Och 149]
          Length = 424

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 51/421 (12%), Positives = 115/421 (27%), Gaps = 39/421 (9%)

Query: 73  VSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASF 132
             S+  + +    +      L +D   + L    +      P  ++ + GT+GK S  + 
Sbjct: 3   AQSSDVILERMMALHPKVIDLTLDRVWRLLDALGNPQRNLPP--VIHIAGTNGKGSTQAM 60

Query: 133 VQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-------LAKALSYLSSQGVTHV 185
           ++   + +G S      TS   +   +        I        L +  +      +T+ 
Sbjct: 61  IRAGLEAAGKSVHAY--TSPHLARFHERIRVAGDLISEADLTAVLDECYAANGGGDITYF 118

Query: 186 SVEASSHGLDQHRLDGIKL-------IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +   +  L   R                  TN+  D +    T  +  + +        
Sbjct: 119 EITTCAALLAFSRTSADFTLLEVGLGGRLDATNVVDDPVLTMITPVSMDHEQFLGDTLRK 178

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                A I           +                  +            +  IS +  
Sbjct: 179 IAFEKAGIIKPGVPCIVSRQADDGMEVIEEVARRHAAPLLAYGQQWHVGPDRDRISYQDD 238

Query: 299 DFDFLFPLPGEFQVYNAL--VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS--- 353
                 P+P     +  +   AA   +          E        P R + + T     
Sbjct: 239 TGLLDLPMPNLPGAHQIMNAGAALTALRHLGFDEHAAEAAVTTAFWPARMQRLKTGPLTD 298

Query: 354 --RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL 409
                 +++D  H   + + +  +++T++     ++ G    +D     RP+    A   
Sbjct: 299 AAPQAELWLDGGHNPAAGDALAAHLQTLSERPTRLICGMLNTKDIDGYLRPL----AAVT 354

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIE---MLNKQDVLVVA 465
            D+  V+     S  P +  AE    +        +   A+   +           +++ 
Sbjct: 355 QDLTAVSIPGEASTLPAEATAEAARDVGFSADVADDVGAALAKIVATTPQAR----VLIC 410

Query: 466 G 466
           G
Sbjct: 411 G 411


>gi|159477675|ref|XP_001696934.1| hypothetical protein CHLREDRAFT_192673 [Chlamydomonas reinhardtii]
 gi|158274846|gb|EDP00626.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 178

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 19/104 (18%)

Query: 21  FPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDG---HLFIPQ---AIAQGAEAIVVS 74
               +   ++  V S+   +  G ++V       +G      +     A+ QGA  +V  
Sbjct: 80  LAAHFPNIEVTGVQSNPHLVTPGDVYV-----HHEGLTDEDQVAAVSVALEQGAVLVVAP 134

Query: 75  S--------AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
                              +    P++ V ++ +  S  A+  Y
Sbjct: 135 HLPKDSTGLHVGEDPLEGVVPDEVPLVRVKDSTEAGSRLAAAFY 178


>gi|189462924|ref|ZP_03011709.1| hypothetical protein BACCOP_03625 [Bacteroides coprocola DSM 17136]
 gi|189430351|gb|EDU99335.1| hypothetical protein BACCOP_03625 [Bacteroides coprocola DSM 17136]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 94/290 (32%), Gaps = 26/290 (8%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +   A   T    DH+D + T +AY  +  +    + P+    I    D      +  
Sbjct: 177 HWLTPYATVITATDSDHLDIYGTHEAYVESFQKYTSLIQPEGYLIIKKGID------LNP 230

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPGEFQVYNALVA 318
           A   G  V +   +    H + +   + +          +       +P    + N + A
Sbjct: 231 AVQPGVTVYTYSTEEGDFHAENIRIENGEIYFDFISPLGNIKGIQLGVPVYVNIENGIAA 290

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             L    G  +  + + +     V  RF+F    +       DYAH    ++  + ++R 
Sbjct: 291 MALAQIGGATNEEIKQAMPGFRGVDRRFDF-KLKNDRIVFISDYAHHPAEIKQSISSVRM 349

Query: 379 ITSGRII-VVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRA 430
           +   + I  VF      R +            L D  I+ D  P  E P +      I  
Sbjct: 350 LYPDKKITAVFQPHLYTRTRDFYKDFADSLS-LLDEVILLDIYPARELPIEGITSKLIYD 408

Query: 431 EIIHGIPGFI-EKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ETV--HIVT 476
            +   I   +  K N +E I+       K DVL+  G G  E     I  
Sbjct: 409 NLRPDIEKSMCSKENLLEVIKH-----KKTDVLITLGAGDIENYVPQIYE 453


>gi|16759121|ref|NP_454738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140671|ref|NP_804013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052851|ref|ZP_03345729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213417202|ref|ZP_03350346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213426157|ref|ZP_03358907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646588|ref|ZP_03376641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213859656|ref|ZP_03385360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289823736|ref|ZP_06543348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|30316091|sp|Q8Z9H0|MURD_SALTI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293608|pir||AC0518 UDP-N-acetylmuramoyl-L-alanine,D-glutamate ligase [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501411|emb|CAD01283.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136295|gb|AAO67862.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 438

 Score = 44.5 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L  A   L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDADREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +      + A       +  K    ++ 
Sbjct: 158 ELSSFQLET--TSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAK---LRVYEKAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGVNMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +         
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSPLARYLTG-------DRIRLYCFGRDGAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPHVQPGDMVLL 410


>gi|293376913|ref|ZP_06623130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292644459|gb|EFF62552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 459

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 99/354 (27%), Gaps = 24/354 (6%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
           A+VV              S   ++ V +       F           ++AV         
Sbjct: 63  AVVVDREVKELKKI----SGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVAV--------- 109

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
                    ++          ST        R    +P  L   L    S          
Sbjct: 110 ----TGTSGKTTTKDMIKHILSTWYKVEGTVRSANGNPRNLIYLLRIDDSIQAAVYESAV 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            + G   +         G  TN+G DH++  +T Q Y NAK  +   +    +  +    
Sbjct: 166 GAPGDITYTCSHFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVSVIPEGGTLIL--NA 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D    + +  +   G  +              +   +N    T+++    +    P  G+
Sbjct: 224 DDEKIKTIDTSKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGK 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
            QVYNAL        +GI      + L    ++    E     ++   I   +   + SL
Sbjct: 284 HQVYNALADLAATHEMGIGITQAAQALSSFKLLMNHCEIKKGLNQATIIDDTWNINTASL 343

Query: 370 EMILKNIRTITSGRIIVVFG----CGGDRDQGKRPIMGKIALDL-ADIAIVTDD 418
           +  +  +  +      V         G+        +GK+      D  I   D
Sbjct: 344 KAAMNTLCELNQQHKKVALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGD 397


>gi|188995369|ref|YP_001929621.1| putative folylpolyglutamate synthase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595049|dbj|BAG34024.1| putative folylpolyglutamate synthase [Porphyromonas gingivalis ATCC
           33277]
          Length = 428

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 109/381 (28%), Gaps = 30/381 (7%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTP 165
           +       + V GT+GK S AS +  I Q +G+          +            +T  
Sbjct: 41  HPHKAYRTIHVAGTNGKGSTASTLAAILQVAGMRVGLFTSPHLVDFRERIRVNGICITEE 100

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHR-------------------LDGIKLIA 206
             +   +    + +          +    D  R                    + I  I 
Sbjct: 101 YVVDFCERTREMVTTLHPSFFELTTMMAFDYFRHAQVDMALIEVGMGGRLDSTNIITPIL 160

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
              TN+G+DH+ +                 +       +  A+         +A      
Sbjct: 161 SIITNIGKDHVQFLGDTPEKI--AFEKAGIIKSGVPVVVGRAEGGVRHAFQHKADEERAD 218

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           ++     G  I        +  Q         +   L        +  A+        + 
Sbjct: 219 IVFAQESGVIISSTLENGCYTYQTRDYGSVRGELTGLAQEENARTILCAVEVLSKRCGLN 278

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
           + S  V E    +  + G F      +   RI  D  H  +   +I + +R  T  ++ +
Sbjct: 279 LSSEHVREGFAHVTAMSGLFGRWQQLAEQPRIVCDTGHNEDGFRLITEQLRRQTYRQLRI 338

Query: 387 VFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           VFG   D+D      ++ + A+     A V     R+   + +R +            + 
Sbjct: 339 VFGMVNDKDITAVLALLPREAVYYFTRASV----DRALPEDDLRQQAAAFGLVGNTYSSI 394

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            EA+  A    +  D + V G
Sbjct: 395 REALEAARREAHADDFIFVGG 415


>gi|227513098|ref|ZP_03943147.1| folylpolyglutamate synthase [Lactobacillus buchneri ATCC 11577]
 gi|227524313|ref|ZP_03954362.1| folylpolyglutamate synthase [Lactobacillus hilgardii ATCC 8290]
 gi|227083673|gb|EEI18985.1| folylpolyglutamate synthase [Lactobacillus buchneri ATCC 11577]
 gi|227088544|gb|EEI23856.1| folylpolyglutamate synthase [Lactobacillus hilgardii ATCC 8290]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 19/226 (8%)

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
            +    H A  +   +   GK   +  +  I  +Q  +   +  +F+ L          +
Sbjct: 231 PLKVIEHTASGKKSPMTILGKQFTVNNLGMIDWEQHFSFKSDHDEFNDLSTGLIGDYQTD 290

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLH------VVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
               A          +    +   +          GRFE     +    I +D AH  ++
Sbjct: 291 NAALAIQAYLNYCQLSSRPVNHNSVIAGIKQTKWGGRFER---INDHPTIVIDGAHNISA 347

Query: 369 LEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN----PRSE 423
           ++ I+  +    + G+I V+ G   D+   K         +++   I+T  N      + 
Sbjct: 348 VDEIVDLLESNFSKGKIYVLMGILADKQAEKMVEKMATVKNVS--IILTSFNGPGKRNAA 405

Query: 424 DPEKIRAEIIHGIPGFIE---KGNRIEAIRTAIEMLNKQDVLVVAG 466
           DP+ +  ++              +   AI T  + L   D+L++ G
Sbjct: 406 DPQVLEEQVDSKERKKTVTDVIDDWQTAIDTIQKKLMTDDMLLITG 451


>gi|293192326|ref|ZP_06609437.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           odontolyticus F0309]
 gi|292820241|gb|EFF79235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           odontolyticus F0309]
          Length = 481

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 141/429 (32%), Gaps = 63/429 (14%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS-------LFASRLYGKH 113
           P+A+A+     +V +   L   S  + ++ P+       +            A RL  + 
Sbjct: 55  PEALAR----AIVEANLDLVVVSPGVPAHHPVFSAC---EAAGIEVWGEVELAWRLQEEG 107

Query: 114 P---ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
           P      L VTGT+GK++    + +I + +G  + ++G   T  + A D+          
Sbjct: 108 PHAGRPWLVVTGTNGKTTTVGMLGEILRCAGAKAEEVGNIGTPITRAIDS---------- 157

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                          +VE SS  L   R   +  +A    N+  DH+D+H + +AY   K
Sbjct: 158 ----------DAEVFAVELSSFQLHTVRT--VSPLASICLNVDADHLDWHGSVEAYAADK 205

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH--------LKKV 282
            R++E  +                E       A    L++G                +  
Sbjct: 206 ARVYENTIRACVYPASDRRVEQMVENADVVEGARAIGLTLGSPSVSQFGIVEGLLVDRAF 265

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +    ++          P P    V +AL AA L  A G++   V   L      
Sbjct: 266 VEDRARHAAALAHISDLAGAYGPHPSAAVVSDALAAAALARAYGVEPEAVEAGLRAFRPA 325

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             R   +   +    +    A  +++    L  +      R  +    G  + Q    ++
Sbjct: 326 GHRRAIIAHAADLTWVDDSKATNAHAARASLAGLPP----RSAIWIVGGDAKGQDFTELI 381

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGNRIE-----AIRTAIEML 456
            ++   L  + ++       ED   +   +  G P     + +  E      +  A+ + 
Sbjct: 382 RQVEPTLRGVVVI------GEDRAPLVEALQAGAPDVPRVEVDGHEDWMFSVVNEAVALS 435

Query: 457 NKQDVLVVA 465
              D +V+A
Sbjct: 436 MPGDTVVLA 444


>gi|270262837|ref|ZP_06191108.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Serratia odorifera 4Rx13]
 gi|270043521|gb|EFA16614.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Serratia odorifera 4Rx13]
          Length = 421

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 20/193 (10%)

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
                    + Q      G       P+P       A   A L  +        +    +
Sbjct: 226 AWDYSEQGERWQWE---GGGTRLTDLPMPNVPLANAATALAALHYSELEIDERAIFTGLQ 282

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSN--SLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
              +PGRF+ V        + +D AH  +                G++  V G   D+D 
Sbjct: 283 QATLPGRFQIVRQ---DPMLILDVAHNPHAAGYLAGRLAKLPRNGGKVRAVVGMLSDKDI 339

Query: 397 GKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 G +A   +  D       + PR    E +       +    +  +   A R A+
Sbjct: 340 A-----GTLACLSEQVDEWYCAPLEGPRGASVESLA----QHLTEPRQFADVETAWRQAM 390

Query: 454 EMLNKQDVLVVAG 466
           +  + QD+++V G
Sbjct: 391 QDADIQDIVIVCG 403


>gi|215411869|ref|ZP_03420653.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298525647|ref|ZP_07013056.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298495441|gb|EFI30735.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 494

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 131/422 (31%), Gaps = 49/422 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGK 126
           GA A+V + A   +     + +    + V      L+   +            +   +  
Sbjct: 73  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRSAVLAKLMA-------GRTTLMVTGTHG 125

Query: 127 SSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVS 186
            +  + +  +  +             +     +    +                      
Sbjct: 126 KTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNAHHGSGD---------------CFVAE 170

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
            + S   L Q+            TN+  DH+D++ + +AY  A    F E +      ++
Sbjct: 171 ADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGALVV 224

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTISVEG 297
             DD     + +RA   G RVL  G          + +          H +    ++   
Sbjct: 225 CTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQ 284

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG- 356
                   +PG     NAL A    + IG  +  VL+ L     V  RFE VGT   G  
Sbjct: 285 GPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKA 344

Query: 357 --RIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMGKIALDL 409
             R++ DYAH    +   L   R +      GR +VVF      R +      G+ AL+ 
Sbjct: 345 SVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGR-ALNA 403

Query: 410 ADIAIVTDDNPRSEDPEKIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           AD   V D     E P      A +   +        +     +      +  DV+V  G
Sbjct: 404 ADEVFVLDVYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIVTMG 463

Query: 467 KG 468
            G
Sbjct: 464 AG 465


>gi|206579830|ref|YP_002237292.1| tetrahydrofolate synthase/dihydrofolate synthase [Klebsiella
           pneumoniae 342]
 gi|206568888|gb|ACI10664.1| tetrahydrofolate synthase/dihydrofolate synthase [Klebsiella
           pneumoniae 342]
          Length = 422

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 108/373 (28%), Gaps = 34/373 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  V GT+GK +    ++ +   +G           +    +           L 
Sbjct: 46  KPAPFVFTVAGTNGKGTTCRTLETVLMAAGYKVGVYSSPHLVRYTERVRIQGA----ELP 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A    S   +     + S    +   L  + L   +  ++    +       A      
Sbjct: 102 EAAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDA 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--------C 283
            +                D  S    K       +   VG       +  V         
Sbjct: 162 DVAVVTSIALDHTDWLGPDRESIGREKAGIFRAGKPAVVGEPDMPHTIADVASEKGALLQ 221

Query: 284 AIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                    +  E   F          PLP       A   A L  +       +L    
Sbjct: 222 RRGVDWCYEVEDETWSFRDAAGALSRLPLPQVPLPNAATAVAALRASGLAVDDAILRDGI 281

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
           +  ++PGRF+ +    R   + +D AH  ++   +   ++T+  +GR++ V G   D+D 
Sbjct: 282 RDAMLPGRFQIISDAPR---VILDVAHNPHAAAYLAGRLKTLAKTGRVLAVIGMLHDKDI 338

Query: 397 GKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 G +A      D       + PR    E++   +  G        +  +A   A+
Sbjct: 339 A-----GTLANLAPEVDAWYCAPLEGPRGATAEQLVEHLRGG----TVYTSVAQAWHAAM 389

Query: 454 EMLNKQDVLVVAG 466
                +D ++V G
Sbjct: 390 ADAKVEDTVLVCG 402


>gi|77917785|ref|YP_355600.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543868|gb|ABA87430.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
          Length = 419

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 98/318 (30%), Gaps = 21/318 (6%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTT 164
             R        ILAVTG+ GK++   F+ +I    G   +     TS           T+
Sbjct: 29  WHRFRYLRKTKILAVTGSCGKTTATYFLGRILGECGPCYAGVHRNTSRAIYKNMRKMRTS 88

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                                 +     G     +  +    G  T +G DH    + ++
Sbjct: 89  ---------------YRYLVQEMGVGFPGDMAKNIRALPPYIGIVTTIGLDHYTSFRNRE 133

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
               A+       LP    A++ ADD +   +  +   +        +            
Sbjct: 134 GTA-AEKGTLIAALPPSGTAVLNADDPHVMAMASQTQASILTYGCSEHVDVRGSAI-CSD 191

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              +  + ++   +       L G+  V + L A    +A G+  A     L  +   P 
Sbjct: 192 WPQRLSLNVTYGDRSVRVETGLFGDLLVTSLLAAIAGALAAGVSLAQCAASLHGVESFPA 251

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPI 401
           R     +      I   +     S+E  +  ++   + R  VV   F   G     K   
Sbjct: 252 RLSIHRSPQGSWMINDTFKAPFWSVERTVGLMKNAVAPRKTVVLGVFSDTGGSGSRKYRA 311

Query: 402 MGKIALDLADIAIVTDDN 419
           M K+AL++AD  +    N
Sbjct: 312 MAKLALEVADRVVFVGPN 329


>gi|71279807|ref|YP_267163.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Colwellia psychrerythraea 34H]
 gi|71145547|gb|AAZ26020.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Colwellia psychrerythraea 34H]
          Length = 479

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 124/413 (30%), Gaps = 47/413 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            ++V +A S  +       +  I      +  L              +LAV+GT GK++ 
Sbjct: 69  LVIVGNAMSRGNPMVEYMLDRNIPYTSGPQWLLENVLK------DRWVLAVSGTHGKTTT 122

Query: 130 ASFVQQICQ-RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +S +  I +       F IG      S +     T    I   +  S    +    V   
Sbjct: 123 SSMLAWILEYAHMSPGFLIGGVPQNFSSSARLGDTPFFVIEADEYDSAFFDKRSKFV--- 179

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
                         +       NL  DH D              L   +           
Sbjct: 180 ------------HYRPRTLVINNLEFDHGDIFNDLSDIQKQFHHLIRMVPSNGLILSPAN 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG---KDFDFLFP 305
           ++A ++ +                Q +           N Q     V+    +     + 
Sbjct: 228 EEAITETLAMGCWTPTEFSNGELQQDEPSDAGWQVEKLNAQGSEFIVKFNGKEQGVVKWD 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           L G+F + NA++A       G+ SA+ +E L +      RFE  G       +Y D+AH 
Sbjct: 288 LIGDFNIDNAVMAIAAARHAGVPSAVSIEALAEFINTKRRFELRG-IVNNISVYDDFAHH 346

Query: 366 SNSLEMILKNIR---------TITSGRIIVVFGCGGDRDQGKRPIMGKIALDL----ADI 412
             ++   L  +R             GRI  V      R    R  + K +L      AD 
Sbjct: 347 PTAIAKTLAGVRAKLSQQESEQEQVGRIFAVLEP---RSNTMRSGVHKESLPKSLIDADQ 403

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
             +       E      +++I       +  + +E  + +  +     D++VV
Sbjct: 404 VFIYQ----GEQVTWSVSDLIKQCKPACQVEDNVERLVESIAQQAQAGDIIVV 452


>gi|78046387|ref|YP_362562.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|109892756|sp|Q3BXF1|MURC_XANC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78034817|emb|CAJ22462.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 477

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 122/368 (33%), Gaps = 42/368 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V     + + T+ +         
Sbjct: 224 LLCIDDPEVAALAGKTPRH--VMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LE    +  RF    E   ++    R+ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTSSGARVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDP 425
             P  E P
Sbjct: 401 VYPAGEAP 408


>gi|21230200|ref|NP_636117.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769810|ref|YP_244572.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993025|ref|YP_001905035.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|23821875|sp|Q8PCJ9|MURC_XANCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81304236|sp|Q4UQX1|MURC_XANC8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082517|sp|B0RVA4|MURC_XANCB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|21111738|gb|AAM40041.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575142|gb|AAY50552.1| UDP-N-acetylmuramate-alanine ligase [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734785|emb|CAP52995.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 477

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 137/431 (31%), Gaps = 52/431 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V     + + T+ +         
Sbjct: 224 LLCIDDPEVAALAGKTPRH--VMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LE    +  RF    E    +    R+ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTASGARVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEM-------LNKQDVLVVAGKGHE 470
             P  E P                  +    +     +       L   D+L++ G G  
Sbjct: 401 VYPAGEAPIPGADSRALARAIRARGRSEPVVVGQVAGLSEVLPDVLQDGDLLLMMGAGDI 460

Query: 471 TV---HIVTNG 478
                 IVT+G
Sbjct: 461 GYVAQQIVTDG 471


>gi|110640304|ref|YP_668032.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 536]
 gi|191174588|ref|ZP_03036082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300984513|ref|ZP_07177005.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|123148432|sp|Q0TLP8|MURC_ECOL5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110341896|gb|ABG68133.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli 536]
 gi|190905135|gb|EDV64780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300306682|gb|EFJ61202.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|324012254|gb|EGB81473.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 60-1]
          Length = 491

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMHVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|270290450|ref|ZP_06196675.1| UDP-N-acetylmuramate-alanine ligase [Pediococcus acidilactici 7_4]
 gi|270281231|gb|EFA27064.1| UDP-N-acetylmuramate-alanine ligase [Pediococcus acidilactici 7_4]
          Length = 438

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 90/348 (25%), Gaps = 44/348 (12%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           V++      D     R+    L V    +FL    +          + V GT GK+S   
Sbjct: 67  VIAGNAFTDDHPEIKRAREMGLKVVRYHEFLGQLLAAYTS------IGVAGTHGKTSTTG 120

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
            +              G   T            P   +            + +       
Sbjct: 121 LLA---------HVLGGVDKTSYLIGDGTGKGVPDARFFVFEADEYRRHFIAY------- 164

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
                             TN+  DH DY++      +A  +   ++              
Sbjct: 165 -----------HPDYMIMTNVDFDHPDYYKDLADVESAFQQAASQVKKGLFAWGEDTS-- 211

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
               + K   +             F     V      +            F   L GE  
Sbjct: 212 ----LRKLHADVPVYYYGTADNDDFQAKNIVRTTTGSEFDVEHRGEPIGHFKINLFGEHN 267

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           V N L    +     ID ALV + L     V  RF    +      +  DYAH  + ++ 
Sbjct: 268 VLNTLAVIAVAYFEKIDLALVQKELLSYQGVKRRF--SKSTVGDNILIDDYAHHPSEIKA 325

Query: 372 ILKNIR-TITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
            L   R      +I+ VF      R         K    LAD  ++T+
Sbjct: 326 TLDAARQEFPDKKIVAVFQPHTYTRTAALLDGFAKSLS-LADQVVLTE 372


>gi|298491728|ref|YP_003721905.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase ['Nostoc azollae'
           0708]
 gi|298233646|gb|ADI64782.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase ['Nostoc azollae'
           0708]
          Length = 456

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 123/378 (32%), Gaps = 33/378 (8%)

Query: 82  FSATIRSNTPILVVDNTR--KFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  +  + PILV       + +               +A+TGT+GK++  S    I Q 
Sbjct: 71  VSPGVPWDIPILVKARELGIETIGEIELAWRHLQNIPWVAITGTNGKTTTTSLTAAIFQA 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +GL++   G     +             + +              +  E SS+ ++    
Sbjct: 131 AGLNAPACGNIGMAACEV---------ALSVQ---------KPDWIIGELSSYQIESSVT 172

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G +T    DH+  H+T + Y+N K +L      +         +         
Sbjct: 173 --LSPPIGIWTTFTPDHLARHKTLENYYNIKAKLLNNSHLQIFNGDDIYLNKVGLNHWHN 230

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319
           A+    +        K  +++    I      + S    +      + GE    N L++ 
Sbjct: 231 AYWTTVKGPEFLIGEKGFYMENGWVIEKLSATSTSQPIVEVS-ALRMVGEHNQQNLLMSV 289

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                 GI+   +   + +   V  R E + T      I    A   ++ E+ L ++++ 
Sbjct: 290 AAARLGGINIEAISHAVHEFPGVTHRLEHICTWEGIDFINDSKATNYDAAEVGLASVKS- 348

Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439
                +++   G  +       + KI    A + ++ +  P      +   E+  G   F
Sbjct: 349 ----PVILIAGGEAKAGDDTGWLNKIQAKAATVLLIGNAAPTF---AQRLEEV--GYTNF 399

Query: 440 IEKGNRIEAIRTAIEMLN 457
                  +A+  + E+  
Sbjct: 400 EIIETMAKAVPKSAELAK 417


>gi|119773906|ref|YP_926646.1| UDP-N-acetylmuramate [Shewanella amazonensis SB2B]
 gi|119766406|gb|ABL98976.1| UDP-N-acetylmuramate [Shewanella amazonensis SB2B]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 109/356 (30%), Gaps = 27/356 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV GT GK+S +S +  + +  G    F IG        +     +    +   
Sbjct: 101 PGRWVLAVAGTHGKTSTSSMLAWVLEHCGYEPGFLIGGVPQNFGVSARLGNSPFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                 +       NL  DH D   +         
Sbjct: 161 EYDSAFFDKRSKFV---------------HYQPKTLVINNLEFDHADIFDSLADIQRQFS 205

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
            +   +             A ++ + K   +              +      A    +  
Sbjct: 206 HVIRTVPGCGKVIWPKGSKAVAEVIEKGLWSEQETFSHQADADWSVRPL---AADGHKFE 262

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +          + L G   + NA++A      +G+  A  +E L        R E +G 
Sbjct: 263 VLFGGEVQGVLDWQLIGNHNMENAVMAIAAARHVGVAPAAAIEALSGFMPPKRRLELIG- 321

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDR-DQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E  LK +R  + + RI VV     +   +G       +++ L
Sbjct: 322 EVGGVSLYDDFAHHPTAIETTLKGLRAKVGNARIFVVLEPRSNTMKRGVHKDTLALSMAL 381

Query: 410 ADIAIVT-DDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   DN        IR  +           +    +      + + D LVV
Sbjct: 382 ADEAFLYQADNIGW----DIRDAMAQAPLPVDVDYDIDSIVAKVTAKVQRGDQLVV 433


>gi|291457566|ref|ZP_06596956.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium breve DSM
           20213]
 gi|291380619|gb|EFE88137.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium breve DSM
           20213]
          Length = 512

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 58/424 (13%), Positives = 107/424 (25%), Gaps = 40/424 (9%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVV--DNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V SSA    +      +   + +V   +    L          + +  + V G  G
Sbjct: 85  ASTVVYSSAIKPSNPEIVAANEAGLYIVHRSDILALL---------MNGKRAVTVAGAHG 135

Query: 126 KSSVASFVQQICQRSGLSSFQI---GPTSTISSFAQDNRLTTPSPIYLAKALSYL---SS 179
           K++ +S +  I   +G                +            +      S       
Sbjct: 136 KTTTSSMLAHILVHTGADPSYAIGGSIQGPDGTTLDGGHAGQGDVLVAEADESDGSFAKY 195

Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239
                +   A +  LD +  +     A                      A  +     + 
Sbjct: 196 HPTIAIITNAEADHLDHYGDEAHYRAAFVNHAGHATGHVVICADDPDALAVFQALPADVK 255

Query: 240 KESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
             +            ++       G   + +  + +           +      S +   
Sbjct: 256 AHTVVYGTTPIEQLPDL------GGAAHVWISSEQETAGTGVERLTLHLPAAVTSADAVA 309

Query: 300 FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
                 +PG     NA  A    + +G+  A   + +        RF+  GT  +   + 
Sbjct: 310 QRVELKVPGIHNARNAAAAITAAVLLGVSPADAAQAVGTFLGAARRFQVHGTVKQ-VTVV 368

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTD 417
            DYAH    +  +L   R       + V        + K       +     AD  IVT 
Sbjct: 369 DDYAHHPTEIAALLDAARRRYPQSTVRVIFQPHLFSRTKFFAHEFAEALAK-ADDVIVTG 427

Query: 418 DNPRS---EDPEKIRAEII----------HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             P     ED  +I A  I                    +   A R      +  DV+  
Sbjct: 428 IFPAREKQEDFPEITAATIVDAAAGIKDAAAGEWIQPVEDMGLAARMMAMRAHHGDVIFT 487

Query: 465 AGKG 468
            G G
Sbjct: 488 VGAG 491


>gi|294778430|ref|ZP_06743853.1| bifunctional protein FolC [Bacteroides vulgatus PC510]
 gi|294447692|gb|EFG16269.1| bifunctional protein FolC [Bacteroides vulgatus PC510]
          Length = 428

 Score = 44.5 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 28/386 (7%)

Query: 105 FASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              + +         + + GT+GK S +  +  I Q +G  +        I    +    
Sbjct: 34  LLDKYFNHPHRQFRTIHIAGTNGKGSCSHTLAAILQSAGYKTGLYTSPHLIDFRERIRVN 93

Query: 163 TTPSPIY--LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             P      +     + +     H S    +  +  H     ++            ID  
Sbjct: 94  GIPVSKEYVIDFVEKHRAFFEPLHPSFFELTTAMAFHYFAQSQVDVAIIEVGLGGRIDCT 153

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                       +  + +      +       +  + ++                    K
Sbjct: 154 NIICPDLCVITNISFDHIQFLGNTLAKIATEKAGIIKEKTPVVIGETTPETKPIFTTRAK 213

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-----------------NALVAAGLCI 323
           +V A     +    +     +       +   Y                   L A  L  
Sbjct: 214 EVNAPIYFAEEEQLLHSSSINEKGKRIYQTTDYLNLESELEGLCQLKNTNTLLSAIRLLK 273

Query: 324 AIGIDSALVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             G             ++  + G             +  D  H    +  I++ +     
Sbjct: 274 QAGYQLTESNIRKGFSQVCELTGLMGRWQKLESEPTLICDTGHNVGGISYIIEQLEHQKY 333

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFI 440
            R+ +V G   D+D      M       A          R+   +++++  +  G+ G  
Sbjct: 334 ERLHIVIGMVNDKDISGVLSM---LPKNATYYFTKASVKRALSEKELQSLAMQSGLHGDT 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +   A+  A E  NK D + V G
Sbjct: 391 Y-PDVETAVTAAKEKANKNDFIFVGG 415


>gi|150004865|ref|YP_001299609.1| putative folylpolyglutamate synthase [Bacteroides vulgatus ATCC
           8482]
 gi|149933289|gb|ABR39987.1| putative folylpolyglutamate synthase [Bacteroides vulgatus ATCC
           8482]
          Length = 428

 Score = 44.5 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 97/386 (25%), Gaps = 28/386 (7%)

Query: 105 FASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
              + +         + + GT+GK S +  +  I Q +G  +        I    +    
Sbjct: 34  LLDKYFNHPHRQFRTIHIAGTNGKGSCSHTLAAILQSAGYKTGLYTSPHLIDFRERIRVN 93

Query: 163 TTPSPIY--LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
             P      +     + +     H S    +  +  H     ++            ID  
Sbjct: 94  GIPVSKEYVIDFVEKHRAFFEPLHPSFFELTTAMAFHYFAQSQVDVAIIEVGLGGRIDCT 153

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                       +  + +      +       +  + ++                    K
Sbjct: 154 NIICPDLCVITNISFDHIQFLGNTLAKIATEKAGIIKEKTPVVIGETTPETKPIFTTRAK 213

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-----------------NALVAAGLCI 323
           +V A     +    +     +       +   Y                   L A  L  
Sbjct: 214 EVNAPIYFAEEEQLLHSSSINEKGKRIYQTTDYLNLEGELEGLCQLKNTNTLLSAIRLLK 273

Query: 324 AIGIDSALVLEH--LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS 381
             G             ++  + G             +  D  H    +  I++ +     
Sbjct: 274 QAGYQLTESNIRKGFSQVCELTGLMGRWQKLESEPTLICDTGHNVGGISYIIEQLEHQKY 333

Query: 382 GRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFI 440
            R+ +V G   D+D      M       A          R+   +++++  +  G+ G  
Sbjct: 334 ERLHIVIGMVNDKDISGVLSM---LPKNATYYFTKASVKRALSEKELQSLAMQSGLHGDT 390

Query: 441 EKGNRIEAIRTAIEMLNKQDVLVVAG 466
              +   A+  A E  NK D + V G
Sbjct: 391 Y-PDVETAVTAAKEKANKNDFIFVGG 415


>gi|2780743|dbj|BAA24358.1| MurC [Porphyromonas gingivalis]
          Length = 433

 Score = 44.5 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 72/229 (31%), Gaps = 9/229 (3%)

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +K      T+   DH+D + T + Y ++       +    +  + Y      +     
Sbjct: 172 HHLKPFMAIITSADPDHMDIYGTAENYRDSFEHFTSLIQSGGALVLKYGAPVNPR----L 227

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVA 318
             +      S   +        +     +   T    G   +     +P    V NA+ A
Sbjct: 228 GSDVSLFTYSSDDRQADYFASDIMIRDGRLFFTWHYPGGQLEEVELGVPVRINVENAVAA 287

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
             +    G+    +   +        RFE V    R   +  DYAH    L+  ++++R 
Sbjct: 288 MAIAHLNGVTVEELRSGIASFKGSHRRFEKVLDTER-VVLIDDYAHHPVELDAAIRSVRE 346

Query: 379 ITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP 425
           I SG+ I+         R         K    L D  ++ D  P  E P
Sbjct: 347 IYSGKHIMGIFQPHLYSRTADFYQDFAKSLSML-DQVVLLDIYPARELP 394


>gi|294666420|ref|ZP_06731664.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603789|gb|EFF47196.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 477

 Score = 44.5 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 135/431 (31%), Gaps = 52/431 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDADHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V     + + T+ +         
Sbjct: 224 LLCIDDPEVAALAGKTPRH--VMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+    +   LE    +  RF    E         R+ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVAPDTIARALENFAGIGRRFNDLGEVTTGTGARVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVAGKGHE 470
             P  E P                  +    +     +           D+L++ G G  
Sbjct: 401 VYPAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDI 460

Query: 471 TV---HIVTNG 478
                HI+ NG
Sbjct: 461 GYVAQHIINNG 471


>gi|315637192|ref|ZP_07892414.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315478559|gb|EFU69270.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 332

 Score = 44.5 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++  ++     +L+N  SI  +   +  ++        ++ G +F+      +D +  I
Sbjct: 1   MQISSILDIVDGKLLNSPSISFIYSIKTNVS-------KVKEGDLFI-----VKDPNE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
             A+  GA AI++   +        + +    + V+N    +   
Sbjct: 48  EIALKNGAFAILIEENH------LILDNEIAWIKVENIDLAIIKL 86


>gi|304404008|ref|ZP_07385670.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346986|gb|EFM12818.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
          Length = 489

 Score = 44.5 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 112/367 (30%), Gaps = 31/367 (8%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF---AQDNRLTTPSPIYL 170
           P  I+ +TG++GK++  +++ ++ Q +GL     G   T         D   T  + +  
Sbjct: 111 PAPIIGITGSNGKTTTTTWIGELLQAAGLRPIVAGNIGTPLCEAAQEADASHTLVAELSS 170

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQH--RLDGIKLIAGSFTNLGRDHI---DYHQTQQA 225
            +     S +    + +      LD H    D +   A  F N   D I   ++      
Sbjct: 171 FQLKGTTSFRPHVALLLNVVETHLDYHGGMEDYVASKAKLFANQTADDIAVLNWDDAICR 230

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
               ++                       EV            S G       ++ V   
Sbjct: 231 TIAEQLESQLLPFSLTQRLDKGLYIEPPYEVEPDQPEHSAAGASAGDGALAAPMRNVVYR 290

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
             +   T+ +   +      +PG+    NA+ A    IA G     +   L +   V  R
Sbjct: 291 DAQGAETVVIPVDEL----GIPGKHNAANAMAAIAAAIASGASIESLQAPLREFRGVEHR 346

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
            E+V   +         A         +  +++    R IV+   G DR      ++   
Sbjct: 347 LEYVCERNGVTYYNNSKATNP---AATIVGLKSFPLDR-IVLIAGGLDRGSDYMELLPWF 402

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKG-------NRIEAIRTAIEMLN 457
              L  +  +       E   K+     + G+                 EA+R A  +  
Sbjct: 403 -EQLKAVVSL------GETRGKLAHVAKLAGLTAVETVEPEGDAEATLQEAVRRASALAE 455

Query: 458 KQDVLVV 464
             DV+++
Sbjct: 456 SGDVVLL 462


>gi|300703722|ref|YP_003745324.1| folylpolyglutamate synthase [Ralstonia solanacearum CFBP2957]
 gi|299071385|emb|CBJ42704.1| folylpolyglutamate synthase [Ralstonia solanacearum CFBP2957]
          Length = 432

 Score = 44.5 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 14/132 (10%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPI 401
           PGRF+ +        + +D AH  ++   + +N+  +   R    VFG   D+D     +
Sbjct: 290 PGRFQVLPGRPA---VILDVAHNPHAAAALGQNLENMGFFRYTYAVFGAMQDKDIAG--V 344

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGI-----PGFIEKGNRIEAIRTAIE 454
           +G +   + D   +TD   PR+     +   +   G             +   A R A+E
Sbjct: 345 LGHLLDKI-DHWCLTDLPTPRAASTATLEQALADAGFHPGKDASVSTYSDPATAYRNAME 403

Query: 455 MLNKQDVLVVAG 466
              + D +VV G
Sbjct: 404 RATEDDRIVVFG 415


>gi|309792359|ref|ZP_07686827.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillochloris
           trichoides DG6]
 gi|308225580|gb|EFO79340.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillochloris
           trichoides DG6]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 92/282 (32%), Gaps = 16/282 (5%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L++    G+       TNL  DHI++H +  AY  AK ++F          + 
Sbjct: 160 LELSSFQLERLGAVGLSPRFSLITNLSGDHINWHGSFGAYAQAKTQIFAHQGADGVVVLP 219

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD   + ++   A     R+++            + A      + +            L
Sbjct: 220 AADVGPASQIWPLAGGYVGRMIAYDASPGATSAAHIDASG---NLRLEAMTLAHCDDIHL 276

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
            G     NAL AA L  + GI    +   L     V  R E V   +    +    A   
Sbjct: 277 AGLHNRSNALAAAALAYSFGISPGQIARALCSFVGVEHRLERVRELAGVVYVNDTTATNP 336

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            +    L+ + T      I++   G D++      +G          ++ D    +  P 
Sbjct: 337 AATLAALEALTT-----PIILIAGGADKELAF-ADLGAAIARRVKALVLLD---GTATPH 387

Query: 427 KIRAEIIHGIPGFIEK----GNRIEAIRTAIEMLNKQDVLVV 464
              A    G+              +AI  A  +    + +++
Sbjct: 388 VQAAVAQAGLLDPHAIHGPYAEFAQAIDVARGLAEPGETVLL 429


>gi|283457942|ref|YP_003362545.1| folylpolyglutamate synthase [Rothia mucilaginosa DY-18]
 gi|283133960|dbj|BAI64725.1| folylpolyglutamate synthase [Rothia mucilaginosa DY-18]
          Length = 557

 Score = 44.5 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 15/150 (10%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
              V+    +    PGR E V T        +D  H  + +      +        +  V
Sbjct: 303 PEDVVRTAFETVRSPGRLEVVRTEPL---TILDAGHNPHGVRASAAALTEAFKLSHLHSV 359

Query: 388 FGCGGDRDQ-GKRPIMGKIALDLADIAI----VTDDNPRSEDPEKIRA-EIIHGIPG--F 439
            G  G++D  G    M +  +D +D       V  D+PR+  PE++    +  G+     
Sbjct: 360 VGILGEKDALGMFETMREEYVDASDGTFRLYLVASDSPRAIAPERLHELALDAGLDEDSI 419

Query: 440 IEKGNRIEAIRTAIEML---NKQDVLVVAG 466
               +  EAI TA+E      +   +++ G
Sbjct: 420 EVFEHLDEAIATAMENALFEQESAGVLITG 449


>gi|218512914|ref|ZP_03509754.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli 8C-3]
          Length = 319

 Score = 44.5 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
            P+PG   + NA  A  +   +GI SA + + L     V  RF   G    G +I+ DY 
Sbjct: 34  MPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTG-EWNGVQIFDDYG 92

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDDNPR 421
           H    ++ +L+  R    GRII V      R      +  + A     AD   +      
Sbjct: 93  HHPVEIKAVLRAAREACKGRIIAV--HQPHRYSRLASLFEEFAACFNDADSIFLAPVYAA 150

Query: 422 SEDPEK 427
            ED  +
Sbjct: 151 GEDAIE 156


>gi|170702957|ref|ZP_02893793.1| UDP-N-acetylmuramate [Burkholderia ambifaria IOP40-10]
 gi|170132129|gb|EDT00621.1| UDP-N-acetylmuramate [Burkholderia ambifaria IOP40-10]
          Length = 461

 Score = 44.5 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 109/358 (30%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 103 KWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +       NL  DH D      A       L
Sbjct: 163 DTAFFDKRSKFV---------------HYRPRTAVLNNLEFDHADIFPDLAAIETQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +            DA  + + +   +   R    G          V         + 
Sbjct: 208 VRTVPGVGRLVTNGRSDALERVLARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSQ 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           S       +     G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 268 SERVGAVAWQVQ--GDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SI 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRT---ITSGRIIVVFGCGGDRDQGKRPIM-GKIALDL 409
            G  +Y D+AH   ++E  +  +R      + RI+ V     +    K  +M  ++   L
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGHQNSRILAVLEPRSN--TMKLGVMKAQLPASL 382

Query: 410 ADI-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD   +     P   D     +   +           +    +++ +E     D ++V
Sbjct: 383 ADADLVFGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARPGDHVLV 440


>gi|187250460|ref|YP_001874942.1| putative UDP-N-acetylmuramate-alanine ligase [Elusimicrobium
           minutum Pei191]
 gi|186970620|gb|ACC97605.1| Putative UDP-N-acetylmuramate-alanine ligase [Elusimicrobium
           minutum Pei191]
          Length = 475

 Score = 44.5 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 13/176 (7%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
                PGE  + NA+ A  +   +G+   ++   LEK   V  RF  VG       +  D
Sbjct: 258 MHINTPGEHNIKNAVAAIAVAKELGVPLNVIAAALEKFKGVYRRFNSVGV-FNKIEVIDD 316

Query: 362 YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDL--ADIAIVTD 417
           +AH  + ++  +K    +   R++  F               +  I   L   D   +T+
Sbjct: 317 FAHNPHKIKAAVKAT-QLRGKRVLAYFQPHSFASIQLLTSEFIENICATLRPQDKLWMTE 375

Query: 418 DN------PRSEDPEKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   P++   E I   ++  G         R E  +       + D+++V G
Sbjct: 376 AYYPGGTIPQNVTAETIVKGLLKSGCANVKFNSCREEIAKEIAAEAKEGDIIIVMG 431


>gi|86134326|ref|ZP_01052908.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
 gi|85821189|gb|EAQ42336.1| UDP-N-acetylmuramate-alanine ligase [Polaribacter sp. MED152]
          Length = 450

 Score = 44.5 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 15/149 (10%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
               +   L     V  RF      ++   +  DYAH    +  +  +IR +     ++ 
Sbjct: 288 SLEKIKVQLASFKGVKRRF-SYKIKTKELVLIDDYAHHPTEINAVESSIREMYPNEKVLA 346

Query: 388 FGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----------EKIRAEIIHG 435
                   R +              D  I+ D  P  E+P           KI ++    
Sbjct: 347 IFQPHLFSRTKDFVDDFALALSKF-DEVILLDIYPAREEPIPNVTSEWLLGKITSKQKKI 405

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDV-LV 463
                   +  ++    I ML   D+ ++
Sbjct: 406 AEKKNTIKDIKQSSAKIIAMLGAGDIGVL 434


>gi|325911662|ref|ZP_08174069.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|329921080|ref|ZP_08277603.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
 gi|325476428|gb|EGC79587.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|328934987|gb|EGG31476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 113/393 (28%), Gaps = 52/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 IC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G      S                     L +     + VE SS
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVV------------------LKANANDLLVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L          +A         HIDYH+T + Y  AK+R+ +     +     +    
Sbjct: 176 FQL-MGVNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ +               Q  +        I  +   + +           +PG   
Sbjct: 235 ILEQELSLTKAHVVTFSEESNQADY-------YIGEQYLESQADHEIMKISDIKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +         +    +  +
Sbjct: 288 QQNSLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + +          V+   G DR       +  +        ++       E    +   
Sbjct: 348 AIPSFSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADA 396

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A ++ N  DVL+
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|284008378|emb|CBA74784.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Arsenophonus
           nasoniae]
          Length = 436

 Score = 44.1 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 121/397 (30%), Gaps = 55/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   SL      I ++  I ++ +              +  + I+A+TG++GKS
Sbjct: 66  ADLIVVSPGISLATPELKIAADKGIEIIGDIE--------LFCRETHKPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +       G               TP+   LAK              +
Sbjct: 118 TVTALVGEMAKAANWRVAIGGNIG------------TPALTLLAKDYDLYV--------L 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K    +  N+  DH+D + +    +                    
Sbjct: 158 ELSSFQLET--TSSLKAAVATILNVTEDHMDRYPSGIQQYRVAKLRIYAGAKICII---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  +  +  R        ++ G        +++         T             L 
Sbjct: 213 QQDPQTWPLRGRDARCISFGINSGDYQLNTRCQELQIKGQPIINT---------AEIRLV 263

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N + A  L  A+ I     L  L +   +P R + V  +     +    A    
Sbjct: 264 GQHNYLNGVAALALADAVNIPRKASLAALTQYAGLPHRCQLVHQHLGIQWVNDSKATNVG 323

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E     ++ +     + +   G  +     P+   I+     +     D         
Sbjct: 324 STEA---ALKGLQVAGTLYLLLGGEGKSADFSPLKPYISAKNIKLCCFGRDGY------- 373

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              ++       +      + +R  +  L   D++++
Sbjct: 374 ---QLAQLKANSLLLDTMEQCLRVIVPELKAGDMVLL 407


>gi|124004439|ref|ZP_01689284.1| UDP-N-acetylmuramate--alanine ligase [Microscilla marina ATCC
           23134]
 gi|123990011|gb|EAY29525.1| UDP-N-acetylmuramate--alanine ligase [Microscilla marina ATCC
           23134]
          Length = 479

 Score = 44.1 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 56/377 (14%), Positives = 109/377 (28%), Gaps = 33/377 (8%)

Query: 53  KEDGH-LFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYG 111
             D +   IP+A    A  +VV +                   V    + L         
Sbjct: 54  HFDDNVAHIPEAFTHPATTLVVYTPAVPAQHKQLNYFKQHNFQVKKRAEVLGFL------ 107

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQ--RSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
                 +AV GT GK+S +S +  I    +   ++F  G      S    ++      I 
Sbjct: 108 TQDRFTVAVAGTHGKTSTSSMIAHIIHYAKKNCTAFLGGILQEYESNLILSQEIDKESIM 167

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +                        +  R         +  N            +     
Sbjct: 168 V--------------------VEADEYDRSFLHLHPNIAVLNSVDADHLDIYGNEDSVLD 207

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F + + +     I  +      ++   +    +  ++             +     
Sbjct: 208 SYVAFIKKIKENGRLFIKKEIHLGTNLL--PNTVITKSFALEQNADCQAQHVQVSPEAFY 265

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
               + +    +    +PG   + NA VA  + + +GID   + + L     V  RFE  
Sbjct: 266 FDFHTEDITIQNIKIKVPGYHNIINATVAIAVALELGIDPQQIRDALAVYKGVKRRFE-Y 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALD 408
               +      DYAH    +E+ LK+++ +   + I          + +  + G   +L 
Sbjct: 325 ILQHKNIIYIDDYAHHPTEIEVFLKSVKAMYPNKKITAIFQPHLFTRTRDFLDGFAKSLS 384

Query: 409 LADIAIVTDDNPRSEDP 425
           L D  ++ D  P  E P
Sbjct: 385 LTDQLVLLDIYPAREQP 401


>gi|146307736|ref|YP_001188201.1| FolC bifunctional protein [Pseudomonas mendocina ymp]
 gi|145575937|gb|ABP85469.1| FolC bifunctional protein [Pseudomonas mendocina ymp]
          Length = 425

 Score = 44.1 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 55/383 (14%), Positives = 108/383 (28%), Gaps = 38/383 (9%)

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---------TISSFAQDNR 161
           GK    ++ VTGT+GK S  +F+  + +  G                          D  
Sbjct: 38  GKPAPLVITVTGTNGKGSTCAFLASLLRSQGRKVGVYSSPHLLRYNERVVIDGREVDDAE 97

Query: 162 LTTPSP----------IYLAKALSYLSSQGVTHVSVEA--SSHGLDQHRLDGIKLIAGSF 209
           L               +   +  +  +       +++A     GL   RLD + L+    
Sbjct: 98  LCQAFAAVEAARGETSLTYFEMGTLAAFWLFERAALDAVVLEVGLG-GRLDAVNLVDADL 156

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
             +    +D+         +       ++    PA+    D     ++++          
Sbjct: 157 ALITSIGLDHADWLGDTRESVAFEKAGIMRAGKPALCGDLDPPQP-LLEQVALLDAPFFL 215

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G      +   +           +          PL        AL      +      
Sbjct: 216 RGRD----YDLSIQGQQWSWYGLDAHGQVLQLEQLPLLDLPMENAALSLQAYALLQLPWD 271

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSN--SLEMILKNIRTITSGRII 385
              +        V GR +    + RG    + +D  H  +           R   +G+  
Sbjct: 272 RQQIVQALLATRVTGRLDRRALDWRGKSLTLLLDVGHNPHAADYLAQRLEARP-PAGKRW 330

Query: 386 VVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKG 443
            VFG   D+D      P++ ++A   A   + T   PRS    ++ A +        +  
Sbjct: 331 AVFGLLADKDLPGVVAPLLSQVAG-WAVAPLAT---PRSRPAGELAAHLQSYGAAVTQHA 386

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
               A+    E     D +++ G
Sbjct: 387 GVRAALEAQCEQAAAGDEILLFG 409


>gi|303252423|ref|ZP_07338588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-
           medo-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648696|gb|EFL78887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-
           medo-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 454

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 167 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSSGCILSAAA 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 226 DENVQNTLKMGSYSELQF----IGEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGA 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G    G  +Y D+AH   ++
Sbjct: 282 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAI 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  L D     V   +    
Sbjct: 341 AATINALRGKVGKEQRILAVLEPRSNTMK---MGLHKEEIAPSLVDANAVFVYQPDTIPW 397

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 398 AVSVITDNLTQPAKWS---ADLDEVVKMIVEEAKPTDHILV 435


>gi|293376048|ref|ZP_06622301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sanguinis PC909]
 gi|292645349|gb|EFF63406.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sanguinis PC909]
          Length = 449

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 59/381 (15%), Positives = 110/381 (28%), Gaps = 39/381 (10%)

Query: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146
               P L V   ++                I  +T       +          +   +  
Sbjct: 79  NPGIPYLKVPLLKRA-----------QELKIPIITEVELAFEICEAPFIGITGTNGKTTT 127

Query: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206
                 +   +  N L   +   +A  ++   +Q    +  E SS  L    L   +   
Sbjct: 128 TTLIYEMLKESTLNPLIAGNIGEVATEVAK-VAQANQVLVTELSSFQLMGMPLF--RPRI 184

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N+   H+DYH     Y  AK+ L +     +       DD   + + +        
Sbjct: 185 SLLLNITEAHLDYHLNLDEYRQAKLNLIKNQTSDDYCVYNSEDDVIVEGIKQTKATCIPF 244

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
            LS   +G +I    V            +  K         G+  + + L A  + +  G
Sbjct: 245 SLSEKVEGAYILEGAVYFKEEWIIDVKDILLK---------GDHNLQDVLGAVAVSLLYG 295

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
            D   +   L++   V  R +FVG            A    + +  LK          I+
Sbjct: 296 CDLEAIRTVLKRFAGVKHRLQFVGEIKGVKYYNNSKATNIIATQTALKAFDG-----PII 350

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN 444
           +   G DR      ++        +    IVT      E   + +A     +       +
Sbjct: 351 LIAGGLDRGHDLSGLV-----PYFNKIKSIVT----YGETKHRFKALADEHLMPCTVYDH 401

Query: 445 RIEAIRTAIEMLNKQDVLVVA 465
             +A+  A E     D+++ A
Sbjct: 402 LDQAVEDAYEQAIAGDIVLFA 422


>gi|260773230|ref|ZP_05882146.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612369|gb|EEX37572.1| dihydrofolate synthase/folylpolyglutamate synthase [Vibrio
           metschnikovii CIP 69.14]
          Length = 421

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 44/369 (11%), Positives = 95/369 (25%), Gaps = 24/369 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ V GT+GK S  + ++ I  ++G S         I    +        P    
Sbjct: 46  RPSATVITVAGTNGKGSTCALMESILLQAGYSVGVYSSPHLIRYNERVRINGHELPDSKH 105

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
                       + ++       +   L  ++L       +    +       A    + 
Sbjct: 106 TEAFAYIETQRGNTTLSL----FEFGTLAALRLFQTEQVEVILLEVGLGGRLDATNVVEH 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI----HLKKVCAIHN 287
            +               DD       K       +    G          H   + A   
Sbjct: 162 DVSVITSLAIDHVDWLGDDINVIGFEKAGIFRSGKPAICGQPSPPATVAAHADDISATFY 221

Query: 288 KQQVTISVE--------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           +  +    E         +   F         +  A  A  L         +    + + 
Sbjct: 222 QVGIQYHYETLSSSSWRWRSGSFELSDLPIPTLPLANAATALMALGCSGLDISDIDVSEG 281

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGK 398
                    +        I +D AH  +S   ++  +       ++ +V G   D+D   
Sbjct: 282 LRKANLAGRMQVLQTQPTILLDVAHNPHSAHYLVSQLEQRYPQQKVHMVLGMLHDKDIKS 341

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
                +    +           PR+   +++   +      ++   +   A   A+    
Sbjct: 342 TI---EALTPVVKAWYPASLSGPRAASSQELVRYLPPTQSEYLCPVD---AFEAALTKAQ 395

Query: 458 KQDVLVVAG 466
             DV+VVAG
Sbjct: 396 SNDVIVVAG 404


>gi|256843669|ref|ZP_05549157.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           125-2-CHN]
 gi|293380420|ref|ZP_06626489.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           214-1]
 gi|256615089|gb|EEU20290.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           125-2-CHN]
 gi|290922999|gb|EFD99932.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           214-1]
          Length = 437

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +     +   ++K         +    +  +F     L G+  + N+     
Sbjct: 222 IPKYTYGFNDTDDFQATQIQKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNSTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + E +        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIREGMLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|304312310|ref|YP_003811908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [gamma proteobacterium
           HdN1]
 gi|301798043|emb|CBL46265.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [gamma proteobacterium
           HdN1]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 130/403 (32%), Gaps = 35/403 (8%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV +A +  + +     NT +  V            R +      ++ V GT GK++ 
Sbjct: 64  LVVVGNAMARGNPAVEYMLNTGLPYVSGPEWL------RRHVLQGRWVVGVAGTHGKTTT 117

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
           +S V  I + +G    F IG     S+F    RL     +         + +  +    +
Sbjct: 118 SSMVAWILEHAGLCPGFLIG--GIPSNFGISARLGGKEGVAEPTFFVVEADEYDSAFFDK 175

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            S     Q R            NL  DH D      A    +       +P +   I+ A
Sbjct: 176 RSKFIHYQPRT-------AILNNLEFDHADIFDDLAAIQR-QFHHLVRTIPGQGRIILPA 227

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
            D   KEV+K+           G    +    ++               +  +  + + G
Sbjct: 228 SDENLKEVLKKGCWTPVEEFGAGASAGWQA--ELLEPGGSHFAVYLSGERQGEVRWSMTG 285

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V NAL A       G+  +  +  L +      R E VG   +G R++ D+AH   +
Sbjct: 286 MHSVNNALAALAAARHCGVLPSDGIRALCEFEGARRRMELVG-EVQGVRVFDDFAHHPTA 344

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG------KIALDLADIAIVTDDNPRS 422
           +   L+ +R       I  F     R    R  MG        +   AD  I     P  
Sbjct: 345 IATTLEGLRGNVGDARI--FAVIEPRSNTMR--MGVHQSLLAPSTAAADQVI--WYQPPG 398

Query: 423 EDPEKIRAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
            + +     +I   P        IEA I   +      D +V+
Sbjct: 399 LNWQ--LDGVIAASPVPARVEQSIEAIIADIVREARSGDQVVI 439


>gi|254496588|ref|ZP_05109456.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
 gi|254354212|gb|EET12879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
          Length = 454

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 113/365 (30%), Gaps = 43/365 (11%)

Query: 54  EDGHLFIPQAIAQGAEAIVVSSAY-------SLQDFSATIRSNTPILVVDNTRKFLSLFA 106
            DG  +   ++A  A+ ++V +A             +    ++ P  + +N      + A
Sbjct: 50  TDG--YEDASLALKADVVIVGNAIKRGMPVLEAVIEAGKSYTSGPQWLAENILSKYQVIA 107

Query: 107 SRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPS 166
                        ++GT GK++  S V  I  ++GL+   +      S F    RL    
Sbjct: 108 -------------ISGTHGKTTTTSMVSWILDQAGLNPGFL-IGGVSSDFKTSARLGGGK 153

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
              +       +        +               +       NL  DH D +   +A 
Sbjct: 154 WFVIEADEYDSAFFDKRPKFM-------------HYRPRIAILNNLEFDHADIYPNLEAI 200

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
              +       +P    AI   DD    EV+ R      R+  +   G           +
Sbjct: 201 QM-QFHYLLRTIPASGVAIKPRDDKALNEVIARGQY--SRIEEIALAGDAQWSVTFIEDN 257

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
                 +    +  +  + L G F V N L A    +  G+   +  E LE+   V  R 
Sbjct: 258 GSAFKVLHYGEEIAEVHWSLIGRFNVENGLAAIAASVNAGVSPKVAAEALERFTPVKRRL 317

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV---FGCGGDRDQGKRPIMG 403
           E   +N  G  +Y D+AH   ++   +  ++     R I     F     R       M 
Sbjct: 318 EV-KSNKHGITVYDDFAHHPTAITRTIDALKRSNRHRRIFAVLEFASYTMRTGIHAAEMA 376

Query: 404 KIALD 408
           +    
Sbjct: 377 EALAP 381


>gi|160895297|ref|ZP_02076068.1| hypothetical protein CLOL250_02856 [Clostridium sp. L2-50]
 gi|156862990|gb|EDO56421.1| hypothetical protein CLOL250_02856 [Clostridium sp. L2-50]
          Length = 451

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 95/278 (34%), Gaps = 18/278 (6%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+   +        +  NL  DH++ H T + Y N K  + +    ++   + Y
Sbjct: 162 EISSFQLET--IVDFHPNVSAVLNLTPDHLNRHYTFENYGNVKKSITKNQTEEDVVVLNY 219

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD +++ + +           +      ++++            I V          L 
Sbjct: 220 -DDEHTRAMAEGIRPRVVYFSRLEKPAGGVYVEDGHIKIEANGEKIDVLALKDLI---LL 275

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V N L A G+   +G+   ++ +       V  R E+V T +             +
Sbjct: 276 GAHNVENVLAAVGISYYMGVPVNIIRDVAVSFKAVEHRIEYVKTVAGVDYYNDSKGTNPD 335

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    ++ +      +   + G G D+       +      +  + ++       +  +K
Sbjct: 336 AAIKGIQAMV-----KPTYLIGGGYDKGSTYDEWIDAFDGKVRCLVLI------GQTAKK 384

Query: 428 IRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           I      HG    + + + +EA++   E     + +++
Sbjct: 385 IAETAKKHGFHNIVFEDDLLEAVKYCHENAKDGEAVLL 422


>gi|556014|gb|AAB40043.1| UDP-N-acetyl muramate-alanine ligase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 348

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 113/381 (29%), Gaps = 54/381 (14%)

Query: 90  TPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGP 149
            P++      KFL  +  +         +AVTG  GK+S    +  + Q +  +SF IG 
Sbjct: 1   IPVIR---YHKFLGDYMKKFTS------VAVTGAHGKTSTTGLLAHVIQNAKPTSFLIGD 51

Query: 150 TSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF 209
            +   +   +            +   +  S    +  +                      
Sbjct: 52  GTGQGNENSEY-----FVFEACEYRRHFLSYQPDYAIM---------------------- 84

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           TN+  DH DY  +    F+A     E  L      I   DD +   + K   N       
Sbjct: 85  TNIDFDHPDYFSSIDDVFDAFQ---EMALQVNKGIIACGDDEH---LPKIHANVPVVYYG 138

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
            G +  F     V +                 F  P  G   V N+L    LC    IDS
Sbjct: 139 TGEENDFQARNIVKSTEGTTFDVFVRNTFYDTFYIPAYGHHNVLNSLAVIALCHYEEIDS 198

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
           +++   L+    V  RF           +  DYAH    +++ ++  R     R IV   
Sbjct: 199 SIIKHALKSFGGVKRRFNEKQLG--DQVLIDDYAHHPTEIKVTIEAARQKYPDREIVAVF 256

Query: 390 CGG--DRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHGIPGFIEKGNR 445
                 R Q       +     AD   + D      E+  K+   ++   I         
Sbjct: 257 QPHTFTRTQQFLDEFAESLS-GADCVYLCDIFGSARENAGKLTIGDLQGKIHNAKLIEED 315

Query: 446 IEAIRTAIEML-----NKQDV 461
             ++  A +          D+
Sbjct: 316 DTSVLKAHDKAVLIFMGAGDI 336


>gi|291526115|emb|CBK91702.1| folylpolyglutamate synthase/dihydrofolate synthase [Eubacterium
           rectale DSM 17629]
          Length = 424

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 51/384 (13%), Positives = 93/384 (24%), Gaps = 11/384 (2%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V +    +       +   P + V  T        +       +  + V        V
Sbjct: 25  VVVTAQVIKVLREKGKQKRIIPYIHVAGTNGK-GSVCAFFSSILKKEHMRVGTFVSPHLV 83

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               +       +    +                T     LA AL Y   Q   ++ +E 
Sbjct: 84  DFEERITVDGRMIPKEDVTRLGNYLLDIDFGIGLTMFDYCLAMALLYFEEQQCDYMVIET 143

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G      + I     +                    A  +                 
Sbjct: 144 G-LGGRLDSTNAIGTPQCAVITKIGYDHMAILGSDIADIAAEKAGIIKENGTVVVEQQDK 202

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            A      +        +              +      Q    +       ++      
Sbjct: 203 RAMQVIEQEAQKKHARIITVEQSDIARCSGYALRLCGTFQWENAAAAELAARYVLGKHYG 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              Y          +   D    ++   +  V PGR E V        + VD AH SN +
Sbjct: 263 GPEYEMQYDKTGPKSEKTDLNDRIKSALEETVWPGRMEIVSKEPF---LLVDGAHNSNGV 319

Query: 370 EMILKNIRTITSGRIIVVF-GCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEK 427
           + + +++  +  G     F G   D+D     +M +  L LA+    VT D+ R+     
Sbjct: 320 DALKESLMQMYPGEKFCFFMGVMADKDYD---VMIREILPLAEEFYTVTPDSDRALQASH 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRT 451
           +   I        E     E IR 
Sbjct: 377 LADFIRKEGVEATELSGVDE-IRK 399


>gi|331000938|ref|ZP_08324575.1| protein FolC [Parasutterella excrementihominis YIT 11859]
 gi|329569897|gb|EGG51654.1| protein FolC [Parasutterella excrementihominis YIT 11859]
          Length = 428

 Score = 44.1 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 115/388 (29%), Gaps = 23/388 (5%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
              +     RL  +    +  V GT+GK S  +F++      G S         I    +
Sbjct: 25  LDRMETMLKRLDIRFKCPVFTVGGTNGKGSTCAFIESALLAGGYSVGVHTSPHLIRFNER 84

Query: 159 ----------DNRLTTPSPIYLAKALSYLSSQGVT--HVSVEASSHGLDQHRLDGIKLIA 206
                     +  +     +  A+    LS    T   + +  +   LD   L+      
Sbjct: 85  VRINGKDAKDEELIRQFEKVEAARGEMTLSYFEYTLLGILLLFAEKDLDAVVLEIGLGGR 144

Query: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266
               N     +    +      A +    E +  E   I  +                  
Sbjct: 145 LDAVNTVEPSVSVITSIGIDHTAYLGTTRESIGWEKAHIYRSGKPAICADANPPITVEQY 204

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
              +G +   I        ++  +       +      PLP     +    A+G   A+ 
Sbjct: 205 ADKIGAELLVIGKTFRFEHNHGDKTWNFFGSRGELRNLPLPTMPGEHQLNNASGAFEALQ 264

Query: 327 IDSALVLEHLEKLHV---VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-G 382
                +    E                       +Y+D  H  ++ + + K +  +    
Sbjct: 265 CMQGKLPLKREAFESALLNTRITGRFSKVRNAPEVYLDVGHNPHAAKELAKTLSGLPKAT 324

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEI-IHGIP--G 438
           R + VFG   D+D   R  + +I +   +   ++D   PR    + + A +   G+P   
Sbjct: 325 RQVAVFGMLSDKD---RAQVCRIMVSSFNKWYLSDLQGPRGGIAQDLCAMLSEAGVPQEK 381

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   EA++ AIE  ++ D +V  G
Sbjct: 382 IQTFKTVEEALQRAIEEAHETDRIVTFG 409


>gi|110804155|ref|YP_687675.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 5 str.
           8401]
 gi|123343170|sp|Q0T8A6|MURC_SHIF8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110613703|gb|ABF02370.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|332762093|gb|EGJ92362.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 4343-70]
 gi|333009336|gb|EGK28792.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-218]
 gi|333010587|gb|EGK30020.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri VA-6]
 gi|333011479|gb|EGK30893.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-272]
 gi|333021722|gb|EGK40971.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-227]
          Length = 491

 Score = 44.1 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|309779051|ref|ZP_07673818.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922116|gb|EFP67746.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 886

 Score = 44.1 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 128/375 (34%), Gaps = 30/375 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + +TGT+GK+ VA  V Q+ Q SG  +             Q                  L
Sbjct: 489 VGITGTNGKTVVAKLVAQMLQLSGKHTGLGCSDGLYLDRRQVESGARTDRAAWDACHRIL 548

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHI--DYHQTQQAYFNAKMRLFE 235
            ++ V     E+ S  +    L   +   G  TN G+     D++   +    + +R   
Sbjct: 549 MNRAVEAAVFESDSGMILSQGLPYDRCQVGVVTNFGKPDHLGDFYVEDEDRMYSVLRTQI 608

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY---QGKFIHLKKVCAIHNKQQVT 292
           +++ K    ++ A DA   E+              G            K        +V 
Sbjct: 609 DVVLKTGVGVLNAADARLVEMADLCDGEVIFFALTGDLEAIAAHRAAGKRAVFVRDGKVV 668

Query: 293 ISVEGKD--------FDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH---- 340
           ++    +            +     FQ+ N L A     A+GI + L+   +        
Sbjct: 669 LATGPTELALADVSAIPLTYDGRVPFQLENVLAAVATGWALGISNDLMRAGILTFDVGQV 728

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
            VPGRF        G  I VD AH +++LE +   +    + R  +VFG G  R      
Sbjct: 729 DVPGRFTL--FQHHGATIVVDDAHNASALEALAAALDNFPAQRRTLVFGAGLQRRDEDLV 786

Query: 401 IMGKIALDLADIAIVTDDNP----RSEDPEKIRAEIIHGIPG-------FIEKGNRIEAI 449
             G +     D  ++ +D       +E   + RA +  G+          +E   R + +
Sbjct: 787 AQGTVIGQTFDRVLLCEDASVKRTDAEFDRQARALLKQGLQAGGRVAEVVVEGAKRRDVV 846

Query: 450 RTAIEMLNKQDVLVV 464
             A+  +   D+LV+
Sbjct: 847 DAALSQVTAGDLLVL 861


>gi|292488878|ref|YP_003531765.1| dihydrofolate:folylpolyglutamate synthetase [Erwinia amylovora
           CFBP1430]
 gi|292900024|ref|YP_003539393.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Erwinia amylovora ATCC 49946]
 gi|291199872|emb|CBJ46996.1| bifunctional protein FolC [includes: folylpolyglutamate synthase
           and dihydrofolate synthase] [Erwinia amylovora ATCC
           49946]
 gi|291554312|emb|CBA21668.1| dihydrofolate:folylpolyglutamate synthetase [Erwinia amylovora
           CFBP1430]
 gi|312173038|emb|CBX81293.1| dihydrofolate:folylpolyglutamate synthetase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 420

 Score = 44.1 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVV 387
              ++       ++PGRF+ V  + R   + +D AH  ++   +   +  I    ++  V
Sbjct: 271 EEAIIRRSLHQAILPGRFQTVSESPR---VILDVAHNPHAASYLAGRLAEIKGEAKVHAV 327

Query: 388 FGCGGDRDQGKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN 444
            G   D+D       G +A      D       + PR         +++  +       +
Sbjct: 328 VGMLHDKDIA-----GTLACLAPQVDYWYCAPLEGPRG----ASAEQLMTHLKAAQSFAS 378

Query: 445 RIEAIRTAIEMLNKQDVLVVAG 466
              A   A+    +QD+++V G
Sbjct: 379 VTAAWHHALMQAGQQDIVLVCG 400


>gi|119713342|gb|ABL97406.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [uncultured marine bacterium EB80_02D08]
          Length = 435

 Score = 44.1 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 116/356 (32%), Gaps = 43/356 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLS-SFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             + +LA++GT GK++ +  +  I    G    F +G  S   S +          I   
Sbjct: 99  KKKKVLAISGTHGKTTTSYMLTHIMLDQGNDIGFLVGGISNNISGSASLGSHKTFVIEAD 158

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    +    S+                  +N+  DH D     +     + 
Sbjct: 159 EYDSAFFDKRSKFIHYSPST---------------LVISNIEFDHADIFNNLEDIKR-QF 202

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
               +++P +   I + DD  +KE++            +G     + +       +    
Sbjct: 203 HHLLKIIPLDGNIIYFGDDKNTKELID-----------MGVWSHEMIVNGNIIKADYLNK 251

Query: 292 TISVEGKDFD-FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           T+S + K +     PL GE    N + A       GI     +  L+    V  R E  G
Sbjct: 252 TLSYKDKRYLLGELPLIGEHNFKNYIAAILAAKTDGISIEDSINSLKSFSGVKRRMESKG 311

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--D 408
               G + Y D+AH   ++E     +R+    + I+     G            I     
Sbjct: 312 -TFDGIKFYDDFAHHPTAIEFSSDALRSKYPTKKILGLIELGSNTMASGSHGLSILNSVK 370

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             D  I  D N           +++    G     N  + I +A  M+   D++V+
Sbjct: 371 SLDDVIWLDYN-----------DVLKEAKGIYCYSNSKDFISSAKSMMLDYDIVVL 415


>gi|307246327|ref|ZP_07528406.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307253047|ref|ZP_07534932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255311|ref|ZP_07537124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259746|ref|ZP_07541467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852797|gb|EFM85023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306859505|gb|EFM91533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861760|gb|EFM93741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866214|gb|EFM98081.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 439

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 77/270 (28%), Gaps = 18/270 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A    +       +P     +  A D   +  +K  
Sbjct: 163 HYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSSGCILSAAADENVQNTLKMG 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +  +              K  +             K  +  + + G   ++NAL+A  
Sbjct: 222 SYSELQF----IGEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIA 277

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+  A   + L        R E  G    G  +Y D+AH   ++   +  +R   
Sbjct: 278 AAHHAGVSVAGACDALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAIAATINALRGKV 336

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSEDPEKIRAEIIH 434
                ++       +  K   MG    +IA  L D     V   +        I   +  
Sbjct: 337 GKEQRILAVLEPRSNTMK---MGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ 393

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    +  E ++  +E     D ++V
Sbjct: 394 PAKWS---ADLDELVKMIVEEAKPTDHILV 420


>gi|285019573|ref|YP_003377284.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas albilineans GPE
           PC73]
 gi|283474791|emb|CBA17290.1| probable udp-n-acetylmuramate-l-alanine ligase protein [Xanthomonas
           albilineans]
          Length = 478

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 119/367 (32%), Gaps = 40/367 (10%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  S    +    G+                           L  A +     G   +
Sbjct: 126 KTTTTSLTAAVLSEGGMDPTF--VIGGQ----------------LLAAGANAKLGGGQWL 167

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             EA        RL+ +       TN+  DH++ +    A   A    F + LP    A+
Sbjct: 168 VAEADESDGSFLRLNPLI---SVITNIDADHLENYGNDFARIQAAFAEFLQRLPFYGLAV 224

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-FDFLF 304
           +  DD     +  +       +     +   +  + V    ++   T+ +          
Sbjct: 225 LCIDDPEVAALAAQTPRH--VMSYGLSENADVRAEDVVQEGSRMHFTLRMPEGSSTAVTL 282

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIYV 360
            LPG   V NAL AA +   +G+  A +   L+    +  RF    E V  N    R+  
Sbjct: 283 ALPGRHNVLNALAAAAIGWQLGVTPAAIASALQSFAGIGRRFNDLGEVVTANGARVRVVD 342

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDD 418
           DY H    L  +    R     + +VV      R    R      A  L+  D  ++++ 
Sbjct: 343 DYGHHPRELAAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSEVDALVLSEV 401

Query: 419 NPRSEDP 425
            P  E P
Sbjct: 402 YPAGEAP 408


>gi|206895864|ref|YP_002246933.1| folylpolyglutamate synthase/dihydrofolate synthase
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738481|gb|ACI17559.1| folylpolyglutamate synthase/dihydrofolate synthase
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 417

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 55/151 (36%), Gaps = 11/151 (7%)

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAI-----GIDSALVLEHLEKLH 340
                          DF   L G  Q YNA  A    +A+         A  ++   +  
Sbjct: 225 DFWYDGKFLSYSGSLDFQLALRGVHQWYNASAAIQTVLALSSTELNNIDASDIQEGLREA 284

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
             PGR E V        I +D AH  ++ + +  ++  +  G+   +F     +D+  R 
Sbjct: 285 FWPGRMETVRE---NPLIILDGAHNPHAAQSLRTSLDLLYPGKKWNIF-FAAMKDKDWRS 340

Query: 401 IMGKIALDLADIAIVT-DDNPRSEDPEKIRA 430
           ++ +   DLA+   V      R+E PE I  
Sbjct: 341 VLTQFL-DLANHVYVVRMPYERAESPETIVE 370


>gi|260655415|ref|ZP_05860903.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
           anthropi E3_33 E1]
 gi|260629863|gb|EEX48057.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
           anthropi E3_33 E1]
          Length = 438

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 77/282 (27%), Gaps = 25/282 (8%)

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
           +  +E SS  L  +            TNL  DHID+H + + Y   K+++F         
Sbjct: 152 YTVMELSSFQLHWN--KSFTPQVALLTNLAPDHIDWHGSYENYVADKLKVFGRPGKGNWE 209

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            +   D            + G      G +G  I+         +      +  +    L
Sbjct: 210 IVQARD-------AALVPSGGSVCTLGGTEGTRIYWDDQAVWLERDSGREKLFDRSQLSL 262

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                      A  A  L              L      P R + V        +     
Sbjct: 263 VGQHNLENAAMAGAALALIDKSFAPLQ----GLSDFLPPPHRCQLVRVRRGVTWVDDSKG 318

Query: 364 HTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE 423
                     +       G  I++ G  G  +  K   + +     A   I+        
Sbjct: 319 TNV----ASTRTALEGIDGPKIIILGGKGKGE--KYETLAQTVKARARNVILI-----GA 367

Query: 424 DPEKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +KI A +   G+          E + TA  +    D +++
Sbjct: 368 ESDKIEAALREAGVQSIHRTSCMEEVVSTADGLARPGDTVLL 409


>gi|157964491|ref|YP_001499315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           massiliae MTU5]
 gi|157844267|gb|ABV84768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           massiliae MTU5]
          Length = 498

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 55/404 (13%), Positives = 114/404 (28%), Gaps = 39/404 (9%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  N  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKNFNIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G     +  A+ ++      +   +     +      V +  +
Sbjct: 120 ALISHILNSSGLDYPVAGNIGVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNIT 179

Query: 191 SHGLDQHRLDGIKL------------IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
              LD+H+     +             + +  N+  D+      +         +   + 
Sbjct: 180 PDHLDRHQDMTCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFSVT 239

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
                 I   DD  S            R      Q +F           + +  +     
Sbjct: 240 KILENGISVVDDKISANFFDDISFELQRNSESFRQDEFQGEPAERIKIREHRRDLQNSLV 299

Query: 299 DFDFLFPLPGE------FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                + +P            N   +  +   IG++   +LE +     +P R +++G+ 
Sbjct: 300 SSFMHYAVPFNKNLQGVHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIGSI 359

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
           +         A  + S    +K +  I     +          +  +P   +I       
Sbjct: 360 NNISFYNDSKATNAISAVQSIKALDNIYW---LAGGIPKEGGIEEIKPYFSQIKKAYF-- 414

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                        ++I A     I  F+   N  +A   A +  
Sbjct: 415 ---------YGQAKEIFANTAKNIVDFVICDNLEQAFDLAYKDA 449


>gi|307257474|ref|ZP_07539241.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864054|gb|EFM95970.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 439

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 77/270 (28%), Gaps = 18/270 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A    +       +P     +  A D   +  +K  
Sbjct: 163 HYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSGGCILSAAADENVQNTLKMG 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +  +              K  +             K  +  + + G   ++NAL+A  
Sbjct: 222 SYSELQF----IGEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIA 277

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+  A   + L        R E  G    G  +Y D+AH   ++   +  +R   
Sbjct: 278 AAHHAGVSVAGACDALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAIAATINALRGKV 336

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSEDPEKIRAEIIH 434
                ++       +  K   MG    +IA  L D     V   +        I   +  
Sbjct: 337 GKEQRILAVLEPRSNTMK---MGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ 393

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    +  E ++  +E     D ++V
Sbjct: 394 LAKWS---ADLDELVKMIVEEAKPTDHILV 420


>gi|160903087|ref|YP_001568668.1| UDP-N-acetylmuramate--alanine ligase [Petrotoga mobilis SJ95]
 gi|160360731|gb|ABX32345.1| UDP-N-acetylmuramate--alanine ligase [Petrotoga mobilis SJ95]
          Length = 452

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 76/236 (32%), Gaps = 6/236 (2%)

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
             ++  +       NL  DH++++  +     + +  F +   +               +
Sbjct: 162 GFIEKTETNFSIINNLRPDHLEHYNNEFEKLESSLYKFAKNTKELVILNGDDVHLNKWHL 221

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            ++             +  +I   +      +            D    LPG    Y+AL
Sbjct: 222 NEK----KVLYFGQSEKADYIIKNRHQYNGYQVFEIYHKNTYIGDITLNLPGLHYAYDAL 277

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            +  L + +GI+ + + E   + + V  RF  +  +     I  DYAHT + +   +K  
Sbjct: 278 ASTALSLELGIEFSTIKETFHRYNSVGRRFNIL-YDKDNLSIIDDYAHTPDEILETIKAT 336

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKI-ALDLADIAIVTDDNPRSEDPEKIRAE 431
           +     R I+         +    I   I  L  +D  +V       E+P     E
Sbjct: 337 KEYFPKRKIITIFQPHRYTRLYFHINDFIDVLKYSDEVLVYRIYSAFEEPINGVDE 392


>gi|309804760|ref|ZP_07698824.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
 gi|308165870|gb|EFO68089.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 113/393 (28%), Gaps = 52/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 IC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G      S                     L +     + VE SS
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVV------------------LKANANDLLVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L          +A         HIDYH+T + Y  AK+R+ +     +     +    
Sbjct: 176 FQL-MGVNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ +               Q  +        I  +   + +           +PG   
Sbjct: 235 ILEQELSLNKAHVVTFSEESTQADY-------YIGEQYLESQADHEIMKISDIKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +         +    +  +
Sbjct: 288 QQNSLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + +          V+   G DR       +  +        ++       E    +   
Sbjct: 348 AIPSFSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADA 396

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A ++ N  DVL+
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|288905434|ref|YP_003430656.1| folyl-polyglutamate synthetase [Streptococcus gallolyticus UCN34]
 gi|288732160|emb|CBI13725.1| putative folyl-polyglutamate synthetase [Streptococcus gallolyticus
           UCN34]
          Length = 417

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 78/304 (25%), Gaps = 23/304 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +     V    +EA   GL       +                    
Sbjct: 119 TEFEVITVLMFEYFGHMHPVDIAFIEAGMGGLYDS--TNVFKALAVICPSIGLDHQNVLG 176

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           Q     A+ +                DD     + K                        
Sbjct: 177 QTYAEIAEQKAGVLKEHVPFIFATERDDVRQVFLKKAQACGSQTYEFKKDFSVNETENGF 236

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +    I +       +              A  L       +  +++        
Sbjct: 237 DYQGQENLEDIRLAMLGKHQISNASL-----AITAALLLSKTYPKVTKEIIKSGLAQTHW 291

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E +  N     + +D AH + S++ ++  ++      + ++F     +       M
Sbjct: 292 VGRTELMFPN-----VMIDGAHNNESVQALVNVMQAYKDKNLHILFAAIDTKPID---SM 343

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   LAD+ + T +   S         + +    + +  +  + ++  I+  +K D  
Sbjct: 344 LALLSQLADVDVTTFEYHNSL-------ALENYPEQYQKVPDWKDWVKQ-IDSDSKDDFY 395

Query: 463 VVAG 466
           ++ G
Sbjct: 396 LITG 399


>gi|270159536|ref|ZP_06188192.1| bifunctional protein FolC [Legionella longbeachae D-4968]
 gi|289165666|ref|YP_003455804.1| dihydrofolate:folylpolyglutamate synthetase FolC [Legionella
           longbeachae NSW150]
 gi|269987875|gb|EEZ94130.1| bifunctional protein FolC [Legionella longbeachae D-4968]
 gi|288858839|emb|CBJ12753.1| putative dihydrofolate:folylpolyglutamate synthetase FolC
           [Legionella longbeachae NSW150]
          Length = 425

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 109/377 (28%), Gaps = 34/377 (9%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSP----- 167
               +++V GT+GK S  + ++ I   +G           I    +      P       
Sbjct: 41  PGCRVISVAGTNGKGSTVTALETIYHSAGYKVGSYTSPHLIQFNERIRVNLIPISDDDLC 100

Query: 168 ------------IYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAGSFTNL 212
                       I L        +       ++     L+     RLD   ++    + +
Sbjct: 101 QAFSIIENARGEILLTYFEMTTLAALWYFKKMKLDIIILEVGLGGRLDATNIVDADLSII 160

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
                D+         A       +L    P I   ++  +  + + A  A    L    
Sbjct: 161 TTIDYDHQDYLGDTLEAIGYEKAGILRSGKPFIYADNNPPASVIKRAAQLASPAYLYDVD 220

Query: 273 QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--A 330
                        + ++    S+         P P       A      C+         
Sbjct: 221 FSIQEKNSTWSVHYGEKTGLFSIN------ELPKPSIQLKSAAAAITACCLLNQHLPVAR 274

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
             L    +   +PGR +          +  D +H   S  ++ + I+ +   ++  VF  
Sbjct: 275 THLHSAMQRIFIPGRLQLHRGTVD---VLYDVSHNPQSARLLAETIQRMNKTKVHAVFSA 331

Query: 391 GGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEK-GNRIEAI 449
             D+D        K  +D    A++  DN R+ + + +   +            + + A 
Sbjct: 332 LKDKDIYNLIAPLKNCVDYWYPALL--DNKRAAEADLLITVLRDAAISVEICYTSPLIAF 389

Query: 450 RTAIEMLNKQDVLVVAG 466
             A++     D++VV G
Sbjct: 390 EAALKQSRLGDLIVVYG 406


>gi|254520514|ref|ZP_05132570.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
 gi|226914263|gb|EEH99464.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 11/273 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
               G   N+  DH+DY++    +       F  ++P +   I Y +D    E++ +A  
Sbjct: 178 YPYIGVILNIDADHLDYYRDL-NHIKETFEKFSNIIPSDGYLIGYCEDENVNEILNKAKC 236

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                  +                           + FD      G+  + NAL    + 
Sbjct: 237 -NTISYGINKGDVRATNISFDNKGRASFTVCKDNDELFDVTLNTTGKHNILNALSTICVG 295

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
           +   I    ++E L +      RFE+ G    G  I  DYAH    ++  L     I   
Sbjct: 296 LIFNIPYTSIIEGLRECKGAHKRFEYKG-EFNGATIIDDYAHHPVEIKATLDTATIIPHK 354

Query: 383 RIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSE------DPEKIRAEIIHG 435
            I  VF      R +       +   +  D  ++ D     E      + E++   I   
Sbjct: 355 NIYAVFQPHTYTRTKTLFEDFTECFSE-VDELLLMDIYAAREKDTGIVNSEQLGDAIRAK 413

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                   +  +A      +++  D+++  G G
Sbjct: 414 GIKCTNIHSHEQAANYLKNVVSNDDIILTIGAG 446


>gi|92113659|ref|YP_573587.1| UDP-N-acetylmuramate [Chromohalobacter salexigens DSM 3043]
 gi|91796749|gb|ABE58888.1| UDP-N-acetylmuramate [Chromohalobacter salexigens DSM 3043]
          Length = 456

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 121/416 (29%), Gaps = 48/416 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +++ +A S  +       N  +  V          A ++       ++AV GT GK++ 
Sbjct: 64  LVIIGNALSRGNPEVEAVLNAKLPYVSGP----QWLAEQVL--PGRRVVAVAGTHGKTTT 117

Query: 130 ASFVQQICQRSGLSSF-----QIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           AS +  I + +G +               S   +              A     S+ V +
Sbjct: 118 ASLLTWILEAAGQAPGFLIGGVPRNLGVSSRLGEPGAPFVVEADEYDTAFFDKRSKFVHY 177

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
                                     NL  DH D      A       L   +  +    
Sbjct: 178 RP------------------DIAVLGNLEFDHADIFPDLAAIERQFHHLVRTVPGQGQLV 219

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF 304
           +   + A  + + +   +   R  +         L+      + ++  +    +     +
Sbjct: 220 VAAGEPALERVLAQGCWSPVVRFGASDDASWQWRLES----ADGRRFAVRHGERVAHVDW 275

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
            L G   V NA+ A     A G+        L +      R E  G    G ++  D+AH
Sbjct: 276 ALSGRHNVANAVAALAAASACGVALEAGAAALARFESPRRRQEVRG-EVGGIQVIDDFAH 334

Query: 365 TSNSLEMILKNIRTITS-GRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPR 421
              ++   L+ +   T  GR++ V     +  R    R  +       AD         R
Sbjct: 335 HPTAIAATLEGLAAATDAGRLLAVIEPRSNTMRLGSMRERLPDSVAA-ADRVW----WYR 389

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQDVLVVAGKG-----HET 471
             + E     +    P      + + A+  AI       D +VV   G     HE 
Sbjct: 390 PPEVEWSLEALAAACPVPATVSDEMPALVAAIVAEARPGDRIVVMSNGAFGGIHEK 445


>gi|254488363|ref|ZP_05101568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
 gi|214045232|gb|EEB85870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
          Length = 464

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 128/407 (31%), Gaps = 67/407 (16%)

Query: 77  YSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE--NILAVTGTSGKSSVASFVQ 134
           Y   +       +  + V ++   F   FA++ +    +   I+AVTG++GKS+ ++ + 
Sbjct: 80  YPAPNPVIVAAQDAGVAVDNDIGLFFQSFATQDWDGFDQMPKIIAVTGSNGKSTTSALIH 139

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
            I + +G  +   G         +         + L                   SS+  
Sbjct: 140 HILKHAGRPTQLAGNIGRGVLDIEPAIDGEVVVLEL-------------------SSYQT 180

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD---- 250
           D  R   +      FTNL  DH+D H     YF AK RLF E  P  +   +   +    
Sbjct: 181 DLAR--NLTPDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAIIGVDEAEGRYL 238

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
           A                +     G    +       ++ +    V   D   +  LPG  
Sbjct: 239 AGQLSEGAADDRVIRVSVDRKLSGPGWQVFARKGFLSEYRKGKQVGSIDLRGVTGLPGAH 298

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLE 370
              NA  A   C ++G    ++         +P R + +G       +    A   +S  
Sbjct: 299 NHQNACAAYAACRSLGFAPKVIEAAFASFGGLPHRSQTIGELRGIRFVNDSKATNVDSAV 358

Query: 371 MILKNIRTITSGRIIVVFGCGGDRDQG------------KRPIMGKIALDLADIAIVTDD 418
             L   R I   R I     G ++D G            K  ++G+ A   A        
Sbjct: 359 KALAAFRNI---RWIC---GGLEKDGGLGVLTAPLETVRKAYVIGREAAQFA-------- 404

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
                        +  G+      G    A+  A+      DV+++A
Sbjct: 405 -------------MKLGVE-AEVCGTMDVAVARAVAEAEAGDVVLLA 437


>gi|207742818|ref|YP_002259210.1| bifunctional protein: folylpolyglutamate synthase and dihydrofolate
           synthase [Ralstonia solanacearum IPO1609]
 gi|206594212|emb|CAQ61139.1| bifunctional protein: folylpolyglutamate synthase and dihydrofolate
           synthase [Ralstonia solanacearum IPO1609]
          Length = 436

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 103/381 (27%), Gaps = 38/381 (9%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------------- 163
             V GT+GK S  + ++ I   +G           I    +                   
Sbjct: 45  FTVGGTNGKGSTCTMLEAILMAAGYKVGCHTSPHLIDFNERARVNGEIATDAMLLPHFEA 104

Query: 164 -------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAGSFTNLG 213
                     P+ L        +           +  L+     RLD + ++      + 
Sbjct: 105 AERARCSFDEPVSLTYFEFTTLAIMHLFAKSGLDAVILEVGLGGRLDAVNIVDPDCAVIT 164

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
              +D+         A       +     PA+          V           L     
Sbjct: 165 SVDLDHTAYLGDTREAIGFEKAGIFRPGVPAVCSDPVPPVSLVQHAEAIGADLWLIGRDF 224

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                 ++                  +  L           AL A          +A  +
Sbjct: 225 SFQGTTEQQRQQWGWSGRGRRWSALGYPALRGANQLLNASAALAALESVRDRLPITAQDV 284

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGG 392
                   +PGRF+ +        + +D AH  ++   + +N+  +   R    VFG   
Sbjct: 285 RVGLSRVALPGRFQVLPGRPA---VILDVAHNPHAAAALGQNLENMGFFRYTYAVFGAMQ 341

Query: 393 DRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII-HGI-----PGFIEKGNR 445
           D+D     ++G +   + D   +TD   PR+     +   +   G            G+ 
Sbjct: 342 DKDIAG--VLGHLIDKI-DHWCLTDLPTPRAAGTATLEQALADAGFHPGKDASVSTYGDP 398

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
             A R A+E   + D +VV G
Sbjct: 399 ATAYRNAMERATEDDRIVVFG 419


>gi|157737468|ref|YP_001490151.1| hypothetical protein Abu_1222 [Arcobacter butzleri RM4018]
 gi|157699322|gb|ABV67482.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 332

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++  ++     +L+N  SI  +   +  ++        ++ G +F+      +D +  I
Sbjct: 1   MQISSILDIVDGKLLNSPSISFIYSIKTNVS-------KVKEGDLFI-----VKDPNE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF 105
             A+  GA AI++   +        + +    + V+N    +   
Sbjct: 48  EIALKNGAFAILIEENH------LILDNEIAWIKVENIDLAIIKL 86


>gi|307261892|ref|ZP_07543554.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868439|gb|EFN00254.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 439

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 77/270 (28%), Gaps = 18/270 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A    +       +P     +  A D   +  +K  
Sbjct: 163 HYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSGGCILSAAADENVQNTLKMG 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +  +              K  +             K  +  + + G   ++NAL+A  
Sbjct: 222 SYSELQF----IGEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGAHNMHNALMAIA 277

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+  A   + L        R E  G    G  +Y D+AH   ++   +  +R   
Sbjct: 278 AAHHAGVSVAGACDALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAIAATINALRGKV 336

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSEDPEKIRAEIIH 434
                ++       +  K   MG    +IA  L D     V   +        I   +  
Sbjct: 337 GKEQRILAVLEPRSNTMK---MGLHKEEIAPSLVDANAVFVYQPDTIPWAVSVITDNLTQ 393

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    +  E ++  +E     D ++V
Sbjct: 394 PAKWS---ADLDELVKMIVEEAKPTDHILV 420


>gi|219558131|ref|ZP_03537207.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T17]
 gi|289570268|ref|ZP_06450495.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
 gi|289544022|gb|EFD47670.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
          Length = 482

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 89/425 (20%), Positives = 143/425 (33%), Gaps = 55/425 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           GA A+V + A   +     + +     P+++        ++ A  + G+     L VTGT
Sbjct: 61  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRP------AVLAKLMAGR---TTLMVTGT 111

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +    Q  GL          +     +    +                   
Sbjct: 112 HGKTTTTSMLIVALQHCGLD-PSFAVGGELGEAGTNAHHGSGD---------------CF 155

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S   L Q+            TN+  DH+D++ + +AY  A    F E +     
Sbjct: 156 VAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGA 209

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTIS 294
            ++  DD     + +RA   G RVL  G          + +          H +    ++
Sbjct: 210 LVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELA 269

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG     NAL A    + IG  +  VL+ L     V  RFE VGT   
Sbjct: 270 TAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGV 329

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMGKIA 406
           G    R++ DYAH    +   L   R +      GR +VVF      R +      G+ A
Sbjct: 330 GKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGR-A 388

Query: 407 LDLADIAIVTDDNPRSEDPEKIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLV 463
           L+ AD   V D     E P      A +   +        +     +      +  DV+V
Sbjct: 389 LNAADEVFVLDVYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIV 448

Query: 464 VAGKG 468
             G G
Sbjct: 449 TMGAG 453


>gi|34811495|pdb|1P31|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) From Haemophilus Influenzae
 gi|34811496|pdb|1P31|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) From Haemophilus Influenzae
 gi|34811497|pdb|1P3D|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) In Complex With Uma And Anp.
 gi|34811498|pdb|1P3D|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) In Complex With Uma And Anp
          Length = 475

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 113/377 (29%), Gaps = 42/377 (11%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           GH    + I  GA  +VVSSA    +     + +   P++      + L+      +G  
Sbjct: 69  GH--AEEHIE-GASVVVVSSAIKDDNPELVTSKQKRIPVIQRA---QXLAEIXRFRHG-- 120

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +AV GT GK++  + +  I       +                +           A
Sbjct: 121 ----IAVAGTHGKTTTTAXISXIYT----QAKLDPTFVNGGLVKSAGKNAHLGASRYLIA 172

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +  S     H+    S                   TN   DH D ++       A    
Sbjct: 173 EADESDASFLHLQPXVS-----------------VVTNXEPDHXDTYEGDFEKXKATYVK 215

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
           F   LP    A+  ADD    E++ +                 I   +           I
Sbjct: 216 FLHNLPFYGLAVXCADDPVLXELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYT-VI 274

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
               +  + L  +PG+    NA  A  +    GI +  +LE L        RF+ +G   
Sbjct: 275 CPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFI 334

Query: 354 RGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           R     R+  DY H    + + +K  R    G   +V      R    R +       L+
Sbjct: 335 RPNGKVRLVDDYGHHPTEVGVTIKAARE-GWGDKRIVXIFQPHRYSRTRDLFDDFVQVLS 393

Query: 411 --DIAIVTDDNPRSEDP 425
             D  I  D     E P
Sbjct: 394 QVDALIXLDVYAAGEAP 410


>gi|15618814|ref|NP_225100.1| muramate-Ala ligase & D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           CWL029]
 gi|15836438|ref|NP_300962.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
 gi|16752131|ref|NP_445498.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|6919933|sp|Q9Z701|MUDD_CHLPN RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|4377225|gb|AAD19043.1| Muramate-Ala Ligase/D-Ala-D-Ala Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189873|gb|AAF38741.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979279|dbj|BAA99113.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
          Length = 809

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 82/248 (33%), Gaps = 10/248 (4%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L      A   TN+  +H++ +          ++ F   +   +      D       + 
Sbjct: 166 LKHYTPRAVVITNIDNEHLNNYAGNLDNLVQVIQDFSRKVTDLNKVFYNGDCP-----IL 220

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           + +  G            I      A  +    T   + +  D    LPG+    NA  A
Sbjct: 221 KGNVQGISYGYSPECQLHIVSYNQKAWQSHFSFTFLGQ-EYQDIELNLPGQHNAANAAAA 279

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+ +  GID  ++ + L+K   V  R E     S       DYAH    +   L+++R 
Sbjct: 280 CGVALTFGIDINIIRKALKKFSGVHRRLER-KNISESFLFLEDYAHHPVEVAHTLRSVRD 338

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHG 435
            +   R+I +F         +       A   AD  I+TD     E P +  I +++   
Sbjct: 339 AVGLRRVIAIFQPHRFSRLEECLQTFPKAFQEADEVILTDVYSAGESPRESIILSDLAEQ 398

Query: 436 IPGFIEKG 443
           I       
Sbjct: 399 IRKSSYVH 406


>gi|330973839|gb|EGH73905.1| folylpolyglutamate synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 434

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 103/374 (27%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  + V  + Q  GL          I    +           L 
Sbjct: 39  RPARRVITVTGTNGKGSTCAVVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY--------LSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHID 218
              ++          +     +   A+    +Q RLD + L           NL    + 
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADMA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FI 277
              +        +    E +  E   I  A                 +   +G       
Sbjct: 158 LVTSIGVDHAEYLGDTRESVAFEKAGIFRAGCPALCGDPAPPEPLLAKARELGCPLLLCG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHL 336
               +    +         G+  +       +  + NA +A      +G          +
Sbjct: 218 RDFDLSIGDDSWDWRGVAHGEQIELRGLPLLDLPMQNAALALQAFALLGYPLQPDATGKV 277

Query: 337 EKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGD 393
                + GR +       G    + +D  H  ++ +    +  R    G+   VFG   D
Sbjct: 278 LAETRLAGRLDRRVVKWHGKSLNLLLDVGHNPHAAQFLGQRLARQPVGGKRRAVFGLLSD 337

Query: 394 RDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D       +  +  + A   + T  +  +E+ +     +   +  +        A+   
Sbjct: 338 KDLDGVVAHLAPVIEEWAVAPLPTSRSRPAEELQTALQNLGARVTSYQSI---ALALEAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|291547954|emb|CBL21062.1| folylpolyglutamate synthase/dihydrofolate synthase [Ruminococcus
           sp. SR1/5]
          Length = 432

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 60/407 (14%), Positives = 121/407 (29%), Gaps = 38/407 (9%)

Query: 81  DFSATIRSNTPILVVDNTRKFLSLFASRL-YGKHPENILAVTGTSGKSSVASFVQQICQR 139
           + +     + P     N+         RL   +    ++ V GT+GK S  +F+  + + 
Sbjct: 4   EEAVAYIEDIPRFTTKNSLDHTRECLRRLGDPQRKFRVIHVAGTNGKGSTCAFITSVLRE 63

Query: 140 SGLSSFQIGPTSTISSFAQ----------DNRLTTPS-----PIYLAKALSYLSSQGVTH 184
           +G S         +    +          D  L            L    SY  +   T 
Sbjct: 64  AGYSCGLFTSPHLVEINERFQINEEVIDDDTFLRAFEKVKKLSDELVAEGSYHPTYFETL 123

Query: 185 VSVEA---SSHGLDQ--------HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
           + +     +  G+D          RLD    +      +       H        +++  
Sbjct: 124 LLMGMVIFAEAGVDYVTLETGLGGRLDATTAVEDPAACVITSISLDHMQYLGNTVSEIAG 183

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            +  +      +IY  +     V+ R H           + +   + K+           
Sbjct: 184 EKAGIMVPGVPVIYDGNDPDAAVVMREHAEKLGCPYYELKREDTEIHKITKDGI----RF 239

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG-TN 352
           S++ + +            Y  + AA     I +    +   LE L     +  + G   
Sbjct: 240 SLKDETYGDTVFDIPFIARYQVMNAALAVKTIQVLEDQIPVSLEALKAGMAKTRWQGRME 299

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALD-LA 410
           +    + VD AH  + +E  ++          + ++F    D+D     ++  I      
Sbjct: 300 TVLPGVIVDGAHNEDGVEKFVETAEHFQKEFPLTLLFSAVDDKDYT--DMIRTICSRIRF 357

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIH--GIPGFIEKGNRIEAIRTAIEM 455
              IVT      + P +  AEI    G+P      +   A   A++ 
Sbjct: 358 RHVIVTQVGGYRKVPVEELAEIFREDGVPEVEAIEDVPAAFERAVKE 404


>gi|261349956|ref|ZP_05975373.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanobrevibacter
           smithii DSM 2374]
 gi|288860739|gb|EFC93037.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Methanobrevibacter
           smithii DSM 2374]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 68/189 (35%), Gaps = 10/189 (5%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                    +++TI     +F   F +   F   N++ A+ + +  G+    + + L + 
Sbjct: 248 CDFIGTAGDEKLTIKYSKGEFTTPFHMVSYFFE-NSVGASSVALTYGVSPEDITDALSEF 306

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +P   E VG    G ++ +D A   + ++     +       +++         +  +
Sbjct: 307 KGLPAHMEDVG-EYNGRKVILDSAFLYDGMK---ITLEYFKDDNVVLFLDHFDTLSKRDK 362

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKG----NRIEAIRTAIE 454
             +G++     D+ I +  N  ++  E   A E++  I           +  EA     +
Sbjct: 363 AEVGQLVGQYVDVIIASGFNEVNQTVEMDAAYEVLDAIENPSAIKVATRDITEAAALTFK 422

Query: 455 MLNKQDVLV 463
                D+++
Sbjct: 423 YSKPGDIIL 431


>gi|297529199|ref|YP_003670474.1| FolC bifunctional protein [Geobacillus sp. C56-T3]
 gi|297252451|gb|ADI25897.1| FolC bifunctional protein [Geobacillus sp. C56-T3]
          Length = 431

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 84/273 (30%), Gaps = 14/273 (5%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I       +        V +E    G      + I  +    TN+  DH++    
Sbjct: 120 TEFEVITAMMLYYFGKQNIQDIVLIEVG-LGGRLDSTNIIYPLLSVITNVSYDHMNILGD 178

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 A+     +       A+   +      + K A     +   +G        +  
Sbjct: 179 TLDQIAAEKAGIIKSGIPLVTAV--NEPEAWDVIAKTAAERKAKTYRLGVDFTVSDRQAT 236

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS---ALVLEHLEKL 339
                   VT   E +D     P   + +     V A   + +G         +      
Sbjct: 237 VEGEQFSLVTPFAEYRDLRIQMPGAHQVENAAVAVMAAELLRLGYSFLIDPEHIADGLAT 296

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDRDQGK 398
              PGRFE V  +     I +D AH    +  +++ +R      R+ V+F    D+   +
Sbjct: 297 AAWPGRFEQVSDSPL---IILDGAHNEAGIRSLVETVRAHYPDKRVHVLFAALTDKPLER 353

Query: 399 RPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA 430
              M +   +LAD    T  D PR+   E++  
Sbjct: 354 ---MVQRLDELADTITFTTFDFPRAAAAEQLAD 383


>gi|169351232|ref|ZP_02868170.1| hypothetical protein CLOSPI_02011 [Clostridium spiroforme DSM 1552]
 gi|169292294|gb|EDS74427.1| hypothetical protein CLOSPI_02011 [Clostridium spiroforme DSM 1552]
          Length = 519

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 49/390 (12%), Positives = 116/390 (29%), Gaps = 33/390 (8%)

Query: 92  ILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS 151
           +  +DN ++++    +    +   N + + GT+GK S  ++++++ + +G         +
Sbjct: 130 VYSLDNFKRYMYDLGN---PQLKLNCIHIGGTNGKGSTTNYIKEVLKDAGYRIATFTSPA 186

Query: 152 TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAG---- 207
             S             I     + Y +      +  E S   ++        +       
Sbjct: 187 LYSRLDIIRINDQF--IDEQTMVDYANYYVDLWLEYEISMFEIEVFIAIMYFINQNVDLA 244

Query: 208 ----------SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
                       TN+    +  +          +    + +      I+     Y     
Sbjct: 245 IFEVGLGGTLDATNIIMPKLAINTNIGLDHIDYLGDTYQSIALNKAGIVKEGIDYLTGET 304

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
           K+      + +   +  K + LK +  I +   V       D     P   +       +
Sbjct: 305 KKECLDVFKEVCNKHHSKLLTLKPITNIIDGSNVRYCYRDFDIVLNTPALYQVNNSALAI 364

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR 377
            A L +            L              T ++   I +D AH    ++   +  +
Sbjct: 365 EALLYLKEHQIVTFSKNDLLAGIYNATWKGRFETINKDPLIIIDGAHNKEGIDAFYECAK 424

Query: 378 TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGI 436
              + +  ++F    D+D      M +  L L D   + + ++ RS D + +      G 
Sbjct: 425 KYDNIK--IIFSALRDKD---HKHMLEKLLKLTDDITICEFEHVRSSDAKTLAN----GF 475

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                + +  +AI  A         + + G
Sbjct: 476 -NVKIQPDYKKAIDDAFNHQG---TVFITG 501


>gi|149377430|ref|ZP_01895173.1| folylpolyglutamate synthase/dihydrofolate synthase [Marinobacter
           algicola DG893]
 gi|149358271|gb|EDM46750.1| folylpolyglutamate synthase/dihydrofolate synthase [Marinobacter
           algicola DG893]
          Length = 439

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 6/155 (3%)

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK 374
             +AA +     +   L    +E++              +  R+ VD  H  ++   +  
Sbjct: 271 HSLAAAVVAIRQLAPELAPSAIEQVIARLTLPGRYEVLQQQPRVVVDVGHNPHAANWLAA 330

Query: 375 NIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII 433
            I    +GR+I V+    D+D      +      + D   +   D PR     ++   I 
Sbjct: 331 RIGRREAGRVIAVYAALEDKDVEG---VAGAMAPVVDEWYLAGLDVPRGLSGVELVNRIG 387

Query: 434 HGIPG--FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             +        G+   A+  A+     +DV+VV G
Sbjct: 388 GLLRKPVATVSGSVKVALENALGGAGPEDVVVVFG 422


>gi|33242268|ref|NP_877209.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
 gi|33236779|gb|AAP98866.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 809

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 82/248 (33%), Gaps = 10/248 (4%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L      A   TN+  +H++ +          ++ F   +   +      D       + 
Sbjct: 166 LKHYTPRAVVITNIDNEHLNNYAGNLDNLVQVIQDFSRKVTDLNKVFYNGDCP-----IL 220

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           + +  G            I      A  +    T   + +  D    LPG+    NA  A
Sbjct: 221 KGNVQGISYGYSPECQLHIVSYNQKAWQSHFSFTFLGQ-EYQDIELNLPGQHNAANAAAA 279

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+ +  GID  ++ + L+K   V  R E     S       DYAH    +   L+++R 
Sbjct: 280 CGVALTFGIDINIIRKALKKFSGVHRRLER-KNISESFLFLEDYAHHPVEVAHTLRSVRD 338

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK--IRAEIIHG 435
            +   R+I +F         +       A   AD  I+TD     E P +  I +++   
Sbjct: 339 AVGLRRVIAIFQPHRFSRLEECLQTFPKAFQEADEVILTDVYSAGESPRESIILSDLAEQ 398

Query: 436 IPGFIEKG 443
           I       
Sbjct: 399 IRKSSYVH 406


>gi|191167770|ref|ZP_03029577.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209917284|ref|YP_002291368.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SE11]
 gi|307311458|ref|ZP_07591100.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|309796081|ref|ZP_07690493.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|226706322|sp|B6HZ68|MURC_ECOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190902196|gb|EDV61938.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209910543|dbj|BAG75617.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE11]
 gi|306908437|gb|EFN38935.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|308120323|gb|EFO57585.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|315059314|gb|ADT73641.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli W]
 gi|320200390|gb|EFW74976.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EC4100B]
 gi|323181788|gb|EFZ67201.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1357]
 gi|323380128|gb|ADX52396.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli KO11]
 gi|324017748|gb|EGB86967.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 117-3]
          Length = 491

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFNEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|312874653|ref|ZP_07734677.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325912989|ref|ZP_08175362.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
 gi|311089883|gb|EFQ48303.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325477669|gb|EGC80808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 52/389 (13%), Positives = 112/389 (28%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I +               +    +  +     +  A A   L  +  +   +  ++    
Sbjct: 134 IMENHLHK------LGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK-- 185

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  I   + N+  D   YH+T + Y  AK+R+ +     +     +      ++
Sbjct: 186 ----PKVAAIVDIYNNVHID---YHKTFENYVAAKLRITQNQDKSDYFIANFDQKNILEQ 238

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +               Q  +        I  +   + +           +PG     N+
Sbjct: 239 ELSLTKAHVVTFSEESTQADY-------YIGEQYLESQADHEIMKISDIKIPGRHNQQNS 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G     +   L        R ++V T +         +    +  + + +
Sbjct: 292 LVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASVAIPS 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IH 434
                     V+   G DR       +  +        ++       E    +       
Sbjct: 352 FSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADAARKA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A ++ N  DVL+
Sbjct: 401 GIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|309809977|ref|ZP_07703825.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308169765|gb|EFO71810.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 52/389 (13%), Positives = 112/389 (28%), Gaps = 44/389 (11%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I +               +    +  +     +  A A   L  +  +   +  ++    
Sbjct: 134 IMENHLHK------LGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLMGVNTMK-- 185

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 +  I   + N+  D   YH+T + Y  AK+R+ +     +     +      ++
Sbjct: 186 ----PKVAAIVDIYNNVHID---YHKTFENYVAAKLRITQNQDKSDYFIANFDQKNILEQ 238

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
            +               Q  +        I  +   + +           +PG     N+
Sbjct: 239 ELSITKANVVTFSEESTQADY-------YIGEQYLESQADHEIMKISDIKIPGRHNQQNS 291

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           LVA  +   +G     +   L        R ++V T +         +    +  + + +
Sbjct: 292 LVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASVAIPS 351

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEI-IH 434
                     V+   G DR       +  +        ++       E    +       
Sbjct: 352 FSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADAARKA 400

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           GI   +      EA+  A ++ N  DVL+
Sbjct: 401 GIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|161504752|ref|YP_001571864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160866099|gb|ABX22722.1| hypothetical protein SARI_02875 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 438

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 137/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L + S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALANPSLSAAASAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L  A   L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDADREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLQAVAATVLNVTEDHMDRYPFGLQQYRAAKLSVYENAKVCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGVNMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G     K      +A        +T D  R     +
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDG-----KSADFSSLAR------YLTGDRIRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     EA+R     +   D++++
Sbjct: 373 DGAQLAALRPEIAEQTETMEEAMRLLAPRVQSGDMVLL 410


>gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
 gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
          Length = 808

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 199 LDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMK 258
           L          TNL  +H+  +          M+ F   +          D    K  + 
Sbjct: 166 LKHYAPDVAVVTNLDEEHLVNYDDDPEKLLKAMQEFSNKVRDSQKVFYNGDCPQLKGEIS 225

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
                      +     +    +         +              LPG   V NA  A
Sbjct: 226 GITYGFSPSCQLQVVSFYQREWQSSFSFIFCGIEYQN------IELNLPGRHNVLNAAAA 279

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            G+ +  GI+ +++ + L+K   V  R E    ++       DYAH    +   L+ +R 
Sbjct: 280 CGVALTFGIEISVIRKALKKFPGVQRRLEQKNCSN-KYLYLEDYAHHPVEISHTLQAVRD 338

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
            +   R+I +F             +   A   AD  I+TD     E   +I
Sbjct: 339 AVGLRRVIAIFQPHRFSRLQACLDLFPHAFKDADEVILTDVYSAGEPFVEI 389


>gi|325962950|ref|YP_004240856.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469037|gb|ADX72722.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 458

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 77/417 (18%), Positives = 130/417 (31%), Gaps = 33/417 (7%)

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            +  A GA   V  +A +L D    +  +   +  DN     +  A        + + A 
Sbjct: 51  AELAAAGARIAVGYAAANLGDAQTVVAGSA--IRPDNPELVAAREAGLPVLHRSQALAAT 108

Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQ 180
            G     +VA            +  +   TS ++   Q   L     I  A   +   + 
Sbjct: 109 MGGDTVVTVAG-----------THGKSTTTSMVTILLQGAGLDPSFAIG-ANVPALGVNA 156

Query: 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
                 +  +            +      TN+  DH+D++ T +A + +  R    L   
Sbjct: 157 AHGTSGIFVAEADESDGSFLNYRPRIAVVTNVEPDHLDHYGTAEAVYESFDRFTGLLPAD 216

Query: 241 ESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF 300
                   D        +       RVL  G   +      V          +S     +
Sbjct: 217 GLLVACADDAGALALAERTRKRGNTRVLLYGTSAE---ADLVLHDGGPGDTAVSTPSGRY 273

Query: 301 DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                +PG     NA  A  + + +G+D       L        RFE  G  +RG R++ 
Sbjct: 274 PLALQVPGRHNALNAAAAFAVALELGVDPGAAAAALAHFSGASRRFELKG-EARGVRVFD 332

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI---ALDLADIAIVTD 417
           DYAH    +   L   R++  G  + V        + +     +    AL+LAD A+V D
Sbjct: 333 DYAHHPTEVRAALAAARSVAGGHKVHVLFQPHLFSRTR--EFAQEFADALNLADTALVLD 390

Query: 418 DNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             P  EDP      + I   +  G                      + D+++ AG G
Sbjct: 391 IYPAREDPIPGVTSQLIADHLGGGGRLVAAADAVA----ALAAAAAEGDIVLTAGAG 443


>gi|120610540|ref|YP_970218.1| FolC bifunctional protein [Acidovorax citrulli AAC00-1]
 gi|120589004|gb|ABM32444.1| FolC bifunctional protein [Acidovorax citrulli AAC00-1]
          Length = 441

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 110/364 (30%), Gaps = 33/364 (9%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
            + +   A RL  +    ++ V GT+GK S  + ++ +  +SG  +        +    +
Sbjct: 27  LERVGEVARRLGLRFTCPVITVAGTNGKGSTCAMLEAVALQSGYRTGVYTSPHLVKFEER 86

Query: 159 DNRLT----------TPSPIYLAKAL--SYLSSQGVTHVSVE----ASSHGLDQHRLDGI 202
                            + +  A+    + +S       ++      S  GLD   L+  
Sbjct: 87  CRIRGESVGADDLVPHFAAVEAARTHGGAEVSLSYFEFTTLAILRLMSQAGLDVAILEVG 146

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA----YSKEVMK 258
                  TN+         +        +    E + +E   I+                
Sbjct: 147 LGGRLDATNVVDTDCAVITSIDIDHTEFLGPDRESIGREKAGIMRPGRPAIVSDPMAPQS 206

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
              +A      +   G+  +                  G  +  L            L A
Sbjct: 207 VLDHARALGADLWQFGQDFNFSGDKQQWAWAGRGRRYAGLAYPALRGANQLVNASGVLAA 266

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
                     +A  +     +  +PGRF+ V        + +D AH  +S+  +  N+  
Sbjct: 267 LEALRDRLPITAQAVRTGLAMVELPGRFQIVPGQ---PTLVLDVAHNPHSVAALTANLDA 323

Query: 379 I-TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRA-----E 431
           +        VFG   D+D    P++ +I   L D    TD   PR+E    ++      +
Sbjct: 324 MGFFPTTHAVFGAMADKDLA--PMLARI-GPLVDRWYFTDLPTPRAETAAALQQKWNALQ 380

Query: 432 IIHG 435
           I+ G
Sbjct: 381 IVAG 384


>gi|332637428|ref|ZP_08416291.1| folylpolyglutamate synthase [Weissella cibaria KACC 11862]
          Length = 432

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 11/128 (8%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPI 401
            GR EF         I  D AH  + +  ++  IR      + +VV G    +       
Sbjct: 299 KGRMEFD----EKRNILFDGAHNPDGIISLVAAIRSWHLPFKPVVVLGLLQGKQYH---D 351

Query: 402 MGKIALDLADIAI-VTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           M +  L   D  I VT D+ R+   +++ A+I +          +   AI  A  +    
Sbjct: 352 MLEELLPHVDTVIAVTPDSDRAMSADELAAKIVMMSNVDVEIADDPSAAITLARRVRESS 411

Query: 460 D-VLVVAG 466
           + ++VV G
Sbjct: 412 EALIVVTG 419


>gi|313674451|ref|YP_004052447.1| folc bifunctional protein [Marivirga tractuosa DSM 4126]
 gi|312941149|gb|ADR20339.1| FolC bifunctional protein [Marivirga tractuosa DSM 4126]
          Length = 433

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 56/400 (14%), Positives = 120/400 (30%), Gaps = 33/400 (8%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
            +     +L  +          + V GT+GK S ASF+  + + SG  +         S 
Sbjct: 27  KDLHNTYALLEALGNPHLKGKYIHVAGTNGKGSTASFLASVLKESGYKTGLYTSPHLKSF 86

Query: 156 FAQDNRLTTP----SPIYLAKALSYLSSQGVTHVSVEASSHGLDQ--------------- 196
             +      P      I   +    +  +         ++   D                
Sbjct: 87  TERMRIDGIPISKEEVIQYVEKFKPIIEELRPSFFELTTAMAFDYFAKEEVDIAVIEVGM 146

Query: 197 -HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
             RLD   +I    + + +  +D+ Q               ++ +  P +    +   K 
Sbjct: 147 GGRLDCTNVIQAEVSIITQIGLDHQQFLGNTLEEITNEKAGIIKENVPTVCSVSENELKL 206

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +++    A         +   I + +    + K      +  +  +F   L   +Q+ N 
Sbjct: 207 IIREVAEAKNAPFVDSKERYKISITEESIPNWKMMAENLITSEKVEFESGLSASYQIQNL 266

Query: 316 LVAAGLCIA--------IGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                               +    L ++     + GR++ +  +    +I  D  H   
Sbjct: 267 SSVFSALDILKEKGYSITKENIKNGLRNVIVNSGIKGRWQRIPNDKSQAKIIADTGHNIP 326

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPE 426
           + E I+K I      ++  VF    D+   K   + ++    A     T  N PR+ +  
Sbjct: 327 AFEHIVKMIEKEEFEQLHFVFATVNDK---KLEGVLELLPKNAKY-YFTQANIPRALNAN 382

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            ++                 EA   A +  + +D++ V G
Sbjct: 383 DLKEIAFKYGLKGDSYSTVAEAFSNAQKNASDKDLIFVGG 422


>gi|255327470|ref|ZP_05368538.1| tetrahydrofolate synthase [Rothia mucilaginosa ATCC 25296]
 gi|255295465|gb|EET74814.1| tetrahydrofolate synthase [Rothia mucilaginosa ATCC 25296]
          Length = 556

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 15/150 (10%)

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVV 387
              V+    +    PGR E V T        +D  H  + +      +        +  V
Sbjct: 299 PEDVVRTAFETVRSPGRLEVVRTEPL---TILDAGHNPHGVRASAAALTEAFKLSHLHAV 355

Query: 388 FGCGGDRDQ-GKRPIMGKIALDLAD---IAIVT-DDNPRSEDPEKIRA-EIIHGIPG--F 439
            G  G++D  G    M +  +D +D      +   D+PR+  PE++    +  G+     
Sbjct: 356 VGILGEKDALGMFETMREEYVDASDGTFRLYLAASDSPRAIAPERLHELALDAGLDEDSI 415

Query: 440 IEKGNRIEAIRTAIEML---NKQDVLVVAG 466
               +  EAI TA+E      +   +++ G
Sbjct: 416 EVFEHLDEAIATAMENALFEQESAGVLITG 445


>gi|188533317|ref|YP_001907114.1| FolC bifunctional protein [Erwinia tasmaniensis Et1/99]
 gi|188028359|emb|CAO96220.1| FolC bifunctional protein [Erwinia tasmaniensis Et1/99]
          Length = 420

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 106/380 (27%), Gaps = 34/380 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A+         ++ V GT+GK +    ++ +   +G           +    +      
Sbjct: 37  AAALDLLIPAPVVITVAGTNGKGTTCRTLETLLLAAGYRVGVYSSPHLVRYTERVRVQGE 96

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                   A       G    S+       +   L  + L   +  ++    +       
Sbjct: 97  ELAETAHTASFAAIEAGRAATSLTY----FEFGTLSALWLFKQAQLDVVILEVGLGGRLD 152

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV-- 282
           A       +                D  S    K       +   +G       +  V  
Sbjct: 153 ATNIVDADVAVVTSIALDHTDWLGPDRASIGREKAGIFRKGKPAVIGEPDMPHTIADVAT 212

Query: 283 ------CAIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                           ++ +G  F          PLP       A   A L  +      
Sbjct: 213 EKGARLYQRDRDWSYQVNGDGWSFHDANGSIEHLPLPQVPVPNAATALAALRASTLKVDE 272

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFG 389
            ++ +     ++PGRF+ V  + R   + +D AH  ++   +   +  I   G++  V G
Sbjct: 273 AIIRNSLHQAILPGRFQTVSESPR---VILDVAHNPHAASYLAGRLAEIKKAGKVHAVVG 329

Query: 390 CGGDRDQGKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
              D+D       G +A      D       + PR         ++   +       +  
Sbjct: 330 MLHDKDIA-----GTLACLAPQVDYWYCAPLEGPRG----ASAEQLTAHLTAARSFTSVT 380

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
            A   A+   ++QD+++V G
Sbjct: 381 AAWHGALTQADQQDIVLVCG 400


>gi|114777864|ref|ZP_01452795.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551855|gb|EAU54395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mariprofundus
           ferrooxydans PV-1]
          Length = 455

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 96/352 (27%), Gaps = 45/352 (12%)

Query: 71  IVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSS 128
           ++VS   S +  +      +  P+                       +I+AVTGT+GK++
Sbjct: 70  VIVSPGISWRHPALVQVREAGIPV---------YGDL-QLFGEHFHGDIIAVTGTNGKTT 119

Query: 129 VASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
             S +  +           G             +                      V +E
Sbjct: 120 TVSLISTMLDTLPGGIEAGGNIGKPMLEL----IADGDVPE--------------RVVLE 161

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
            SS  L+  R + I        N+  DH D H   QAY  AK+RLF      +   +   
Sbjct: 162 LSSFQLE--RAEPIHPRWAVLLNVQPDHADMHVDMQAYRAAKLRLFARQGEGDKATLP-- 217

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF---LFP 305
            DA   ++       G  V   G          V                          
Sbjct: 218 GDAEWDDLAAELRGRGAYVRRFGVGSAESLDCGVQMTEQGAWELFWHHFDTVYTIDASQL 277

Query: 306 LPGEFQVYNALVAAGLCIAIGI-DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                  +  L  AG   A      A++ + L     +  R + +G            A 
Sbjct: 278 QTRGRHQHLNLAVAGQAAADFGLSPAVIRQSLTSFRGLQHRLQSLGEVQGRQWFNDSKAT 337

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
             ++    L++          V++ CGG R       +         + +VT
Sbjct: 338 NPDAARAALESFEQ-------VIWVCGGLRKGLDVSELKDAVAAHVALMLVT 382


>gi|300715306|ref|YP_003740109.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
 gi|299061142|emb|CAX58249.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
          Length = 438

 Score = 44.1 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 124/402 (30%), Gaps = 62/402 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    +   + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPSLMDAAQAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V  + + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGDMAKAAGWQVGVGGNIGLP-------------ALMLLEQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TASLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRVYENAAVCVVNADD 215

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           A     + +  R  + G          +           N  + +        +      
Sbjct: 216 AMTFPVRGLDARCVSFGINAGDYHLATESGESWLNVKGDNLMKTSDMTLVGQHNQT---- 271

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 NAL A  L  A+G+  A  L+ L     +  RF+     +    I    A    
Sbjct: 272 ------NALAALALAEAVGLPLASSLKALTTFSGLAHRFQIALDRNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT----DDNPRSE 423
           S E  L  ++    G + ++ G  G                 AD + +T     DN R+ 
Sbjct: 326 STEAALNGLQ--VQGTLWLLLGGDG---------------KSADFSPLTRYLQGDNVRTY 368

Query: 424 DPEKIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVV 464
              +    +    P   +      +A++     +   D++++
Sbjct: 369 CFGRDAQALAELRPEIAVRTETLADAMKQIATQVKPGDMVLL 410


>gi|238022772|ref|ZP_04603198.1| hypothetical protein GCWU000324_02683 [Kingella oralis ATCC 51147]
 gi|237865975|gb|EEP67111.1| hypothetical protein GCWU000324_02683 [Kingella oralis ATCC 51147]
          Length = 452

 Score = 44.1 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 104/373 (27%), Gaps = 44/373 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +LAV GT GK++ AS +  + + +G+ +  +       +F    RL      +   
Sbjct: 103 HQHWVLAVAGTHGKTTTASMLAWVLEYAGMGAGFL-IGGVPQNFNVSARLPQNESPFFVI 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                 +      S                +       NL  DH D      A       
Sbjct: 162 EADEYDTAFFDKRSKFV-----------HYRPRTAILNNLEYDHADIFPNLAAIETQFHH 210

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +  +          +    + +             +                Q  T
Sbjct: 211 LVRTIPGEGLIVANARSGSLKTVLDQGCWTPVAPFGDNAHWQIANVQPDGAFDVQYQGET 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     D              NAL        +G+      + L +   V  R E  G  
Sbjct: 271 VGHIAWDLLGNHNRL------NALAVIAAAQHVGVRVEHSCQALSQFKNVKRRMEIKGIA 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIAL---D 408
           + G  +Y D+AH   ++E  L  +R  + S RII V     +    K   M         
Sbjct: 325 N-GITVYDDFAHHPTAIETTLAGLRQKVGSARIIAVLEPRSN--TMKLGTMSAALAGSLK 381

Query: 409 LADIAI-----VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
            AD        V  D   +  P   +A I      F+   NRI A           D ++
Sbjct: 382 DADQVFCYAGGVDWDVASALAPLGSKAHIGKQFDDFV---NRIAA------AAQAGDHIL 432

Query: 464 VAGKG-----HET 471
           +   G     HE 
Sbjct: 433 IMSNGGFGGIHEK 445


>gi|323240061|gb|EGA24108.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
          Length = 268

 Score = 44.1 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 71/241 (29%), Gaps = 17/241 (7%)

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           +     L +  P         +   +K+    GC         +     K       +  
Sbjct: 10  QKQFHHLVRIVPGQGRIIWPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWE 69

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 K  D  + L GE  ++N L+A      +G+  A     L        R E  G 
Sbjct: 70  VWLDGEKVGDVKWGLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRG- 128

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSG--RIIVVFGCGGDRDQGKRPIMGKIALDL 409
            + G  +Y D+AH   ++   L  +R    G  RII V        +     MG    DL
Sbjct: 129 EANGVTVYDDFAHHPTAILATLAALRGKVGGTARIIAVLEP-----RSNTMKMGLCKDDL 183

Query: 410 ------ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
                 AD   +         P ++       +      G+        ++     D ++
Sbjct: 184 APSLGRADEVFLLQPPH---IPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHIL 240

Query: 464 V 464
           V
Sbjct: 241 V 241


>gi|283783547|ref|YP_003374301.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis
           409-05]
 gi|297243805|ref|ZP_06927735.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis AMD]
 gi|283441804|gb|ADB14270.1| UDP-N-acetylmuramate--L-alanine ligase [Gardnerella vaginalis
           409-05]
 gi|296888226|gb|EFH26968.1| UDP-N-acetylmuramate-alanine ligase [Gardnerella vaginalis AMD]
          Length = 520

 Score = 44.1 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 54/174 (31%), Gaps = 14/174 (8%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG     NA  A    + +G++        E       RF+  G    G  +  DYAH  
Sbjct: 336 PGLHNALNASAAIVAAVLLGMNPENAARGAESFRGASRRFDIRGC-VDGVTVVDDYAHHP 394

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             +  +L+  R   +   + V        R Q       K    LAD  IVT   P  E 
Sbjct: 395 TEIAALLRAARRKYTSSTLRVLFQPHLFSRTQAFANEFAKSLA-LADDVIVTGIFPAREK 453

Query: 425 PEK---IRAE-IIHGIP------GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            E    I AE I+                +   A           DVL+  G G
Sbjct: 454 QEDFPNINAETIVKAAKSQNLDVKIEAVDDMRAAALKLALRAKSGDVLLTVGAG 507


>gi|163854031|ref|YP_001642074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium extorquens PA1]
 gi|163665636|gb|ABY33003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens PA1]
          Length = 455

 Score = 44.1 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 99/328 (30%), Gaps = 39/328 (11%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSA------TIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           + +A   G  A+V++    L             ++  P++   +   F    A+      
Sbjct: 58  LNEADWSGFSALVLAPGVPLTHPEPHWTVGLARQAGIPVIG--DIEIFCRERAAL---AP 112

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
               +A+TGT+GKS+  +    + + +G      G   T     +    T    + L   
Sbjct: 113 DAPFVAITGTNGKSTTTALTAHLLRHAGRDVQMGGNIGTAILSLEPPAATRVHVVEL--- 169

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                           SS  +D      +K   G   NL  DH+D H T + Y      +
Sbjct: 170 ----------------SSFQIDL--TPSLKPGVGILLNLTPDHLDRHGTMENY----AVI 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
            E L+     A+I  DD Y   + +R      R+   G+                    +
Sbjct: 208 KERLVAGADLAVIGVDDPYCAAIAERRTGERIRLHIEGHGDAAGDYVGANGTVRGPDGAV 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
             E      L           A+ AA        + A     L+    +  R E +    
Sbjct: 268 IAEVSGIQALLGDHNLQNAAAAVAAAIRLGLTSTEIAA---GLKSFPGLAHRMEPLRRIG 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITS 381
               +    A  ++S E  L   R I  
Sbjct: 325 PTLFVNDSKATNADSTEKALLAFRDIHW 352


>gi|261337515|ref|ZP_05965399.1| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
 gi|270277914|gb|EFA23768.1| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
          Length = 300

 Score = 44.1 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 69/183 (37%), Gaps = 13/183 (7%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVA-IVGNKEDGHLF 59
           M L+ L         N   + P    +  I  +  D   +  G +F+A    ++ D    
Sbjct: 12  MTLEQLAAD------NGFDLVPNYAGDVTITALVDDVESVIPGSLFIAQHPISRAD---- 61

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFS-ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENIL 118
           I + +  GA A+++  +   +  +    +   P+L  + T K L+  AS+L G   +++ 
Sbjct: 62  INEIVNNGAYAMLLPESMKTELMAHGASQLQIPVLFANITTKQLAALASQLAGAPSDSVA 121

Query: 119 AVTGTSGKS-SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
               T      +A   +++ +   +    +G  +   S + +  +    PI +      +
Sbjct: 122 VFALTGPNQELLADEAKEVARFLHMLGNPVGIINAEDSQSLERFIELNYPIDVLSMQRAM 181

Query: 178 SSQ 180
           +  
Sbjct: 182 AVC 184


>gi|192359036|ref|YP_001983419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cellvibrio japonicus Ueda107]
 gi|190685201|gb|ACE82879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cellvibrio japonicus Ueda107]
          Length = 463

 Score = 44.1 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 109/359 (30%), Gaps = 25/359 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
             + +LAV GT GK++ ++ +  I   +G+   F IG  +     +     T    +   
Sbjct: 101 PGKWVLAVAGTHGKTTTSAMLTWILDYAGMAPGFLIGGVTNNFPTSARLGETPFFVVEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V   A        R   +  +     ++  D     +          
Sbjct: 161 EYDSAFFDKRSKFVHYNA--------RTVILNNLEFDHADIFPDLAAIQRQFHHLVRTIP 212

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                + P    A+             +   A     +            + A       
Sbjct: 213 NNGLVISPAADKALADVL--TMGCWTPQQPFAVINKDTDPDAATPEWTATLLAADGSAFS 270

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 +     +   G   V N L A      +G+   +  + L++   V  R E    
Sbjct: 271 VQHNGEEIAQVHWSHTGIHNVNNGLAALIAARHVGVTPEIAAQALQQFAGVKRRME-CLA 329

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           +    ++Y D+AH   +++  L  +R  +   +II +      R    R  + K AL+ +
Sbjct: 330 DVHSIKVYDDFAHHPTAIKTTLAGLRAKVGDEKIIAIIEP---RSNTMRMGVHKNALNHS 386

Query: 411 DIAIVTD-DNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
               VTD D+     P  +   +   I           +  E I  AI +      +V+
Sbjct: 387 ----VTDADDVLWYQPPDVDWAMDEVINKSPVPAKLVHDLDELIHCAISLSEPDTHIVI 441


>gi|320172818|gb|EFW48050.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 491

 Score = 44.1 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSC 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFLGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|260495140|ref|ZP_05815268.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_33]
 gi|260197197|gb|EEW94716.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 3_1_33]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 131/393 (33%), Gaps = 43/393 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +G++ ++ S+A    +   +   N  I     T        ++L  +  E  +AV GT G
Sbjct: 67  KGSDYVIASTAIKENNPELSYAKNNGI-----TLLKRGELLAKLLNR--ETGIAVAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +           A +  S      +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNARPGK------SEYFIAEADESDNSFLFM 173

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
             + S                   TN+  DH+D H        + ++       ++   I
Sbjct: 174 YPKYS-----------------VITNIDADHLDVHGNLDNIKKSFIKFICH--TQKEAII 214

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLF 304
               +     V K          S+  +   I+ K +  +  K    + +  +   +F  
Sbjct: 215 CMDCENLRDAVSKLPEGKTVTTYSIKDENANIYAKNIRIVDRKTIFELYINKELIGEFSL 274

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---------VGTNSRG 355
            +PGE  + N+L    L +  G+    + E L        R++           G  ++ 
Sbjct: 275 NIPGEHNILNSLPVIYLALKFGVSKGEIQETLHNFKGSKRRYDVLFDNDLENGYGNKTKR 334

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
            RI  DYAH    ++  LK I++I   R++V+F               K A    D  I+
Sbjct: 335 VRIIDDYAHHPTEIKATLKAIKSIDKSRLVVIFQPHRYSRVHFLLDEFKDAFKDVDKVIL 394

Query: 416 TDDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIE 447
                  E  E  I +EI+          N  E
Sbjct: 395 LPIYAAGEKNEFNISSEILKEHINHNNVENMNE 427


>gi|219870652|ref|YP_002475027.1| folylpolyglutamate synthase [Haemophilus parasuis SH0165]
 gi|219690856|gb|ACL32079.1| folylpolyglutamate synthase [Haemophilus parasuis SH0165]
          Length = 432

 Score = 44.1 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 116/380 (30%), Gaps = 32/380 (8%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF----AQDNRLTTPSP 167
           K    ++ V GT+GK S    ++    ++GL          I        Q   +     
Sbjct: 46  KPAPYVITVAGTNGKGSTCKLLEIALLKAGLKVGVYSSPHLIHYNERVRIQGQAVGNADL 105

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI--------AGSFTNLGRDHIDY 219
           I     +    S  +T+      +  LD  R   + +             TN+       
Sbjct: 106 IATFDYIEQHKSASLTYFEFGTLA-ALDLFRKAKVDVAILEVGLGGRLDATNIVDPDFAV 164

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHL 279
             +        +    E + +E   I   +      V+         +         +  
Sbjct: 165 ITSIDIDHVEFLGDNREAIGREKAGIFRPNIPV---VIGEPDCPQSILDYAKELQCHVFR 221

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
           + +    + +   +  + K      PLP   Q   A   A L       S  +L    + 
Sbjct: 222 RDIDWTFSAESDCLQWQSKTKSLTVPLPKIPQPNCATALAVLTQLPFELSDEILVQAVEE 281

Query: 340 HVVPGRFEFVGTNSRGGRI--------YVDYAHTSNSLEMILKNIRTI--TSGRIIVVFG 389
             +  RF+ +G                 +D  H  ++   +   +      + +I  VF 
Sbjct: 282 AKMTARFQLLGEQDFATFSQNRPLAQVIIDVGHNPHAARYLSDRLAEWVQPNRKIYAVFS 341

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEK--GNRI 446
              D+D      + +   +L D          R +   +++++++  +P        N I
Sbjct: 342 ALVDKDLSG---IVEPLEELIDEWYCAGLQGYRGQRGTEVKSKLLTALPNAKAVAYENVI 398

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           EA +   E  N+QD+++V G
Sbjct: 399 EASQVLFETANEQDIILVFG 418


>gi|57239096|ref|YP_180232.1| folylpolyglutamate synthase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579043|ref|YP_197255.1| folylpolyglutamate synthase [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161175|emb|CAH58089.1| putative folylpolyglutamate synthase/dihydrofolate synthase
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58417669|emb|CAI26873.1| Folylpolyglutamate synthase [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 431

 Score = 44.1 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 56/407 (13%), Positives = 117/407 (28%), Gaps = 43/407 (10%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTI 153
           V+D   K L+          P  ++ V GT+GK S  +F++ I   +GL +        +
Sbjct: 19  VLDRIVKLLNNLGDPQKKLPP--VIHVAGTNGKGSTMAFLRYILNAAGLKTHVYTSPHLV 76

Query: 154 SSFAQ----DNRLTTP---SPIYLAKALSYLSSQGVTHVSVEA----------------S 190
               +    D +++       + + +  S          +  A                +
Sbjct: 77  EFNERVIVADKKISDNYLYEALEICREASVGIPVTFFEGTTAAVFLVFSQVDADIVLIET 136

Query: 191 SHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
             G      + +  I    T++  +HI+          A+     +       A      
Sbjct: 137 GLGGRLDATNVLDPILTIITSISLEHIEVLGDTVELIAAEKAGIMKKDVTCVIAPQ--SQ 194

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
               +V +         L  G    F   +    +      T+S           +    
Sbjct: 195 DSIMKVFEYYAMENNVPLYRGGIDWFCEKQDSNILFKNSVDTLSFPLPSLPGKHQVINVG 254

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFE------FVGTNSRGGRIYVDYAH 364
               A           ID   +   + + +  P R E            +   +++D AH
Sbjct: 255 NAIAACSILAGKFHYDIDYDNIAHGITQAYW-PARLEKITTGFLHNMIPQCWELFLDGAH 313

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
                 ++   I+    G + V+ G   D+D  +     K  +       V  + PR++ 
Sbjct: 314 NPGGASVLADWIKDSIVGDLYVIVGMTRDKDSVEFLSYLKPYIKFLSTVCVKSE-PRAQT 372

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD-----VLVVAG 466
             ++    +      I      +AI     +L   D      +++ G
Sbjct: 373 ANELLQVALSLGMNAIASDTLTDAIS---GILEVGDHTKKSTILICG 416


>gi|325915634|ref|ZP_08177942.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538194|gb|EGD09882.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 477

 Score = 44.1 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 122/368 (33%), Gaps = 42/368 (11%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIREDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDSDHLENYGNDFARVQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V     + + T+ +         
Sbjct: 224 LLCIDDPEVAALAGKTPRH--VMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G++   +   LE    +  RF    E   +     ++ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVEPQTIARALENFAGIGRRFNDLGEVTTSTGARVQVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDP 425
             P  E P
Sbjct: 401 VYPAGEAP 408


>gi|325660700|ref|ZP_08149329.1| hypothetical protein HMPREF0490_00061 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325473007|gb|EGC76216.1| hypothetical protein HMPREF0490_00061 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 310

 Score = 44.1 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 65/195 (33%), Gaps = 12/195 (6%)

Query: 259 RAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA 318
           R     C             ++++   +       + +      L            L  
Sbjct: 87  RQIAENCGAPCREITKDAYEIQEITEKYIAFSKRSAYDEDTTWRLSNTGCYQVDNALLAL 146

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-- 376
             + + +      + +        PGR E +        +Y+D AH  N++E  ++ +  
Sbjct: 147 EAVQLLLPKRHLKLWKDTLFHVKWPGRMEEILPG-----VYIDGAHNENAVERFVETVKR 201

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDPEKIRAEIIH 434
           R +  GR +++F    +++  K  ++ ++  +L+     I T ++ R  D  ++   +  
Sbjct: 202 RPVHGGRTVILFSAVKEKEYEK--MIAELCQNLSVDSYVITTVESTRKVDAGELARIVRK 259

Query: 435 GIP-GFIEKGNRIEA 448
                   +    EA
Sbjct: 260 YTDSEVTVREQLEEA 274


>gi|259501649|ref|ZP_05744551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|302191144|ref|ZP_07267398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           iners AB-1]
 gi|309803217|ref|ZP_07697314.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|312871630|ref|ZP_07731722.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
 gi|312873235|ref|ZP_07733291.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|259166934|gb|EEW51429.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|308164725|gb|EFO66975.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|311091246|gb|EFQ49634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|311092855|gb|EFQ51207.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
          Length = 460

 Score = 44.1 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 113/393 (28%), Gaps = 52/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 IC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G      S                     L +     + VE SS
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVV------------------LKANANDLLVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L          +A         HIDYH+T + Y  AK+R+ +     +     +    
Sbjct: 176 FQL-MGVNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ +               Q  +        I  +   + +           +PG   
Sbjct: 235 ILEQELSLTKAHVVTFSEESTQADY-------YIGEQYLESQADHEIMKISDIKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +         +    +  +
Sbjct: 288 QQNSLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + +          V+   G DR       +  +        ++       E    +   
Sbjct: 348 AIPSFSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADA 396

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A ++ N  DVL+
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|160935708|ref|ZP_02083083.1| hypothetical protein CLOBOL_00598 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441452|gb|EDP19162.1| hypothetical protein CLOBOL_00598 [Clostridium bolteae ATCC
           BAA-613]
          Length = 452

 Score = 44.1 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 119/403 (29%), Gaps = 50/403 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF----LSLFASRLYGKHPENILAVTG 122
           G E  ++S    L      +  +  I ++          L   A+           A+TG
Sbjct: 68  GVELCIISPGIPLDSPFVAVVDDAKIPILGEIELAYQCGLGKLAAITGTNGKTTTTALTG 127

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
                       +I +     +F +G       +       T   + +A           
Sbjct: 128 ------------EILKARYEETFVVGNIGDP--YTSKVLEMTEDSVTVA----------- 162

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                E SS  L+   +   +    +  N+  DH++ H T + Y   K  +      +++
Sbjct: 163 -----EVSSFQLET--IMDFRPNVSAILNITPDHLNRHGTMENYIRIKECVTLNQTKEDA 215

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
             +    D        +      RV+    +        +   +                
Sbjct: 216 VVL--NYDDPVLREFGQNPELKPRVIWFSSREMLKDGFCMDGDNIVYCQNGRQTVVVNVH 273

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
              L G     NA+ AA + + +G+  + +   +E  H V  R EFV   +         
Sbjct: 274 DMQLLGRHNYENAMAAAAIALEMGVPMSDITRVIEGFHPVEHRIEFVRERTGVRYYNDSK 333

Query: 363 AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS 422
               ++    L+ +         ++   G D++      + +    +  + ++       
Sbjct: 334 GTNPDAAIQALRAMPG-----PTLLIAGGYDKNSEYDEWVSEFEGKVRYLVLI------G 382

Query: 423 EDPEKIRA-EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  +KI      HG    +   +  EA++      +  D +++
Sbjct: 383 QTRDKIAECAKKHGFTEIMYAEDMQEAVQVCAVYADIGDYVLL 425


>gi|149275985|ref|ZP_01882130.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter sp. BAL39]
 gi|149233413|gb|EDM38787.1| UDP-N-acetylmuramate--L-alanine ligase [Pedobacter sp. BAL39]
          Length = 451

 Score = 44.1 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 11/145 (7%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG   V NA+ A  + + +GI+  LV + +     V  RFE    N+       DYAH  
Sbjct: 273 PGRHNVENAVAAIAVALRLGIEPELVKKAIGNFKGVKRRFE-YIVNTSEYVYIDDYAHHP 331

Query: 367 NSLEMILKNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             L+     IR      ++  VF      R +       K+     D  ++ D  P  E 
Sbjct: 332 EELKACFGAIRQLYPEKKLTAVFQPHLFTRTRDFADDFAKVLGT-VDDLLLLDIYPAREL 390

Query: 425 PEKIRAE--IIHGIPGFIEKGNRIE 447
           P +      ++  I       +R E
Sbjct: 391 PLEGIDAEYLLEKIT-----LDRKE 410


>gi|290508431|ref|ZP_06547802.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Klebsiella sp. 1_1_55]
 gi|289777825|gb|EFD85822.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Klebsiella sp. 1_1_55]
          Length = 422

 Score = 44.1 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 108/373 (28%), Gaps = 34/373 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           K    +  V GT+GK +    ++ +   +G           +    +           L 
Sbjct: 46  KPAPFVFTVAGTNGKGTTCRTLETVLMAAGYKVGVYSSPHLVRYTERVRIQGA----ELP 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +A    S   +     + S    +   L  + L   +  ++    +       A      
Sbjct: 102 EAAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDA 161

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV--------C 283
            +                D  S    K       +   VG       +  V         
Sbjct: 162 DVAVVTSIALDHTDWLGPDRESIGREKAGIFRAGKPAVVGEPDMPHTIADVASEKGALLQ 221

Query: 284 AIHNKQQVTISVEGKDFDF------LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
                    +  E   F          PLP       A   A L  +       +L    
Sbjct: 222 RRGVDWCYEVEDETWSFRDAAGALSRLPLPQVPLPNAATAVAALRASGLAVDDAILRDGI 281

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVFGCGGDRDQ 396
           +  ++PGRF+ +    R   + +D AH  ++   +   ++T+  +GR++ V G   D+D 
Sbjct: 282 RDAMLPGRFQIISDAPR---VILDVAHNPHAAAYLAGRLKTLAKTGRVLAVIGMLHDKDI 338

Query: 397 GKRPIMGKIA--LDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
                 G +A      D       + PR    E++   +  G        +  +A   A+
Sbjct: 339 A-----GTLANLAPDVDAWYCAPLEGPRGATAEQLVEHLRGG----TVYTSVAQAWHAAM 389

Query: 454 EMLNKQDVLVVAG 466
                +D ++V G
Sbjct: 390 ADAKVEDTVLVCG 402


>gi|15609289|ref|NP_216668.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Rv]
 gi|15841644|ref|NP_336681.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31793332|ref|NP_855825.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis
           AF2122/97]
 gi|121638034|ref|YP_978258.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661968|ref|YP_001283491.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|148823361|ref|YP_001288115.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           F11]
 gi|167967845|ref|ZP_02550122.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|215403539|ref|ZP_03415720.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
 gi|215431082|ref|ZP_03429001.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           EAS054]
 gi|215446382|ref|ZP_03433134.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T85]
 gi|224990528|ref|YP_002645215.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798783|ref|YP_003031784.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232311|ref|ZP_04925638.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|254364957|ref|ZP_04981003.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551190|ref|ZP_05141637.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289745425|ref|ZP_06504803.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289754262|ref|ZP_06513640.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289758272|ref|ZP_06517650.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|294993538|ref|ZP_06799229.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           210]
 gi|297634741|ref|ZP_06952521.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731730|ref|ZP_06960848.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN R506]
 gi|306776402|ref|ZP_07414739.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|306780180|ref|ZP_07418517.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|306784925|ref|ZP_07423247.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|306789292|ref|ZP_07427614.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|306793620|ref|ZP_07431922.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|306803890|ref|ZP_07440558.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|306808462|ref|ZP_07445130.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|306968286|ref|ZP_07480947.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|306972515|ref|ZP_07485176.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|307080223|ref|ZP_07489393.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|307084805|ref|ZP_07493918.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|313659065|ref|ZP_07815945.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037857|sp|P65473|MURC_MYCBO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041507|sp|P65472|MURC_MYCTU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224704|sp|A1KKJ5|MURC_MYCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224708|sp|A5U4H9|MURC_MYCTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766013|sp|C1AQ68|MURC_MYCBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2104326|emb|CAB08641.1| Probable UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Rv]
 gi|13881896|gb|AAK46495.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31618924|emb|CAD97029.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis
           AF2122/97]
 gi|121493682|emb|CAL72157.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124601370|gb|EAY60380.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|134150471|gb|EBA42516.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506120|gb|ABQ73929.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Ra]
 gi|148721888|gb|ABR06513.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis F11]
 gi|224773641|dbj|BAH26447.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320286|gb|ACT24889.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|289685953|gb|EFD53441.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289694849|gb|EFD62278.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289713836|gb|EFD77848.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|308215190|gb|EFO74589.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|308326949|gb|EFP15800.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|308330384|gb|EFP19235.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|308334218|gb|EFP23069.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|308338014|gb|EFP26865.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|308345192|gb|EFP34043.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|308349498|gb|EFP38349.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|308354127|gb|EFP42978.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|308358069|gb|EFP46920.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|308362006|gb|EFP50857.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|308365639|gb|EFP54490.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|323719307|gb|EGB28449.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis CDC1551A]
 gi|326903769|gb|EGE50702.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis W-148]
 gi|328458546|gb|AEB03969.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 4207]
          Length = 494

 Score = 44.1 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 89/425 (20%), Positives = 143/425 (33%), Gaps = 55/425 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           GA A+V + A   +     + +     P+++        ++ A  + G+     L VTGT
Sbjct: 73  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRP------AVLAKLMAGR---TTLMVTGT 123

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +    Q  GL          +     +    +                   
Sbjct: 124 HGKTTTTSMLIVALQHCGLD-PSFAVGGELGEAGTNAHHGSGD---------------CF 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S   L Q+            TN+  DH+D++ + +AY  A    F E +     
Sbjct: 168 VAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGA 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTIS 294
            ++  DD     + +RA   G RVL  G          + +          H +    ++
Sbjct: 222 LVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELA 281

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG     NAL A    + IG  +  VL+ L     V  RFE VGT   
Sbjct: 282 TAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGV 341

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMGKIA 406
           G    R++ DYAH    +   L   R +      GR +VVF      R +      G+ A
Sbjct: 342 GKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGR-A 400

Query: 407 LDLADIAIVTDDNPRSEDPEKIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLV 463
           L+ AD   V D     E P      A +   +        +     +      +  DV+V
Sbjct: 401 LNAADEVFVLDVYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIV 460

Query: 464 VAGKG 468
             G G
Sbjct: 461 TMGAG 465


>gi|225630786|ref|YP_002727577.1| folylpolyglutamate synthase [Wolbachia sp. wRi]
 gi|225592767|gb|ACN95786.1| folylpolyglutamate synthase [Wolbachia sp. wRi]
          Length = 429

 Score = 44.1 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 50/402 (12%), Positives = 121/402 (30%), Gaps = 41/402 (10%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSF- 156
            + FLS   +      P  ++ + GT+GK S  +F++ I Q +G           ++   
Sbjct: 23  IKSFLSKLDNPEKKVPP--VIHIAGTNGKGSTLAFIRYIMQAAGYKVHAYTSPHLVNFNE 80

Query: 157 ------------------------AQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                                     +  +T      +A  L++   +    +       
Sbjct: 81  RIVIAGSYIDDNELYSLLEECRAVIAEQAITLFEAATIAAFLAFSRHKADITLIEVGMGG 140

Query: 193 GLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
            LD   +    ++    +           T +     K  + +  +P     +I   +  
Sbjct: 141 RLDTTNVIDSPILTIITSIALDHTEYLGPTIEIIAGEKAGIMKPNVPC----VIAPQEKS 196

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
               ++         L  G        +    +      +I                   
Sbjct: 197 IMNTLEYHAINKKSPLYRGGFEWNCEKQDNRMVFQSAIQSIEFSLPSLKGD-HQIINAGN 255

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS------RGGRIYVDYAHTS 366
             A  +              +    +    P R E +   +      +  ++++D AH +
Sbjct: 256 AIAACSILSGKYGFDIGEEDITSGLQCTYWPARLERIKEGNLISLLPKDWQLFLDGAHNN 315

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           +   ++ + ++   +  I ++FG   +R+  +     K  + L     V  + P++ +  
Sbjct: 316 DGARVLFQWVKDNFAEGIYIIFGVTRNRNVEEFLEHLKPYIKLLCAVCVKSE-PKATNTN 374

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--LVVAG 466
            IR +  +     IE  +  +AI   I   + Q+V  +++ G
Sbjct: 375 LIREKANNIGIKAIECESIGDAISNHILKASIQNVKTILICG 416


>gi|198282527|ref|YP_002218848.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666253|ref|YP_002424717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247048|gb|ACH82641.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518466|gb|ACK79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 448

 Score = 44.1 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 115/350 (32%), Gaps = 39/350 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+A+TG++GKS+V + V ++ + +GL +   G   T +        T P P       
Sbjct: 106 APIVAITGSNGKSTVTTLVGEMARAAGLRAAVGGNLGTPALDLLPE--TGPEP------- 156

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                       +E SS  L           A +  NL  DH+D+H    AY  AK R+F
Sbjct: 157 --------DLYVLELSSFQLAA--CHDFHPRAAAILNLSPDHLDWHGDYAAYAAAKTRIF 206

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +   ++  +  A D ++  +  +           G       +             + 
Sbjct: 207 RAMGAGDTLVL-NAGDTFTAALPPQVPAGVRVQFFGGADEHDASIAGDRLCLRSDGPLLD 265

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++           G     NAL AA L  A+ +    + + L     +P R   +   + 
Sbjct: 266 LDQLPLR------GAHNAENALAAALLARAMAVPVTAIRQALRTFPGLPHRLARIAEING 319

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                        +    +  +         +V   GGD        + +       + +
Sbjct: 320 VSYYDDSKGTNLGATLKAMSGLPG------PLVMILGGDAKGADLSPLREACRGQRGVVV 373

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +  D P+        + ++ GI       N  +A+  A  +  + D +++
Sbjct: 374 LGKDGPQ-------ISALLAGILPVESARNMAQAVEKAAVLAQRGDQVLL 416


>gi|160882637|ref|ZP_02063640.1| hypothetical protein BACOVA_00590 [Bacteroides ovatus ATCC 8483]
 gi|156111952|gb|EDO13697.1| hypothetical protein BACOVA_00590 [Bacteroides ovatus ATCC 8483]
          Length = 496

 Score = 44.1 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 66/240 (27%), Gaps = 11/240 (4%)

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +   +    +I A D  S+E   +   A   +           +        K    
Sbjct: 244 PMMDNTIQSMHEMIEAMDEQSEEEANQMRQALLMLDLSDSLRTLDQILDKRKDAIKIHNE 303

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPGRFEFVG 350
           +      F  L        ++  L A      +  +         L  +    G      
Sbjct: 304 M-FPFGLFTELSGAYQFENMFTILKALATLTRLNYNIRSQDYRAGLANVCQFTGLMGRWQ 362

Query: 351 TNSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIA 406
                  I  D  H  + +E I      I       I +VFG   D+D +G    + K A
Sbjct: 363 KVHSYPDIICDTGHNVDGIEYIHVQLNAIHKTFDQEIHIVFGMVNDKDIRGVLRALPKYA 422

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 A V    P +E         + G           EA++ A +    +D++ V G
Sbjct: 423 TYYFTKASVKRALPENELLALAEEAGLKGTTYPTVV----EAVQAAKKNCPPKDLIFVGG 478


>gi|294141647|ref|YP_003557625.1| FolC bifunctional protein [Shewanella violacea DSS12]
 gi|293328116|dbj|BAJ02847.1| FolC bifunctional protein [Shewanella violacea DSS12]
          Length = 427

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 119/371 (32%), Gaps = 29/371 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT----------P 165
            ++ V GT+GK +  + V+Q+   SG           +    +                 
Sbjct: 49  KVITVAGTNGKGTTCAMVEQVLLLSGERVGVYSSPHMLKYNERVRIDGQDVDDRSFIQAF 108

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHG--LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
             I LA+    LS      ++         LD   L+          N+    I    + 
Sbjct: 109 DAINLARGDISLSYFEFATLAGLYIFKAAKLDTVLLEVGLGGRLDAINIIDADIAVITSI 168

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
                  +    E +  E   I+ A+      ++   +   C +      G  +H     
Sbjct: 169 DLDHQEYLGDTRESVGMEKAGILRANKPA---IIGEPNLPTCVLEYANELGAVLHRVGKE 225

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
             +  + V     G       P+P       A   A L +     S  ++    +   + 
Sbjct: 226 FSYTCEAVFWQFTGLQTMNDIPMPSLPLPNAATALALLELGWPQLSGDIIRQGIQEARLT 285

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG 403
           GR E V        + +D AH  ++   + K +    + R+  + G   D+D   R ++ 
Sbjct: 286 GRLEVVSEQPL---VLLDVAHNPHAARYLAKQLEKHPAKRLFAICGMLKDKDC--RQVI- 339

Query: 404 KIALDLADIAIVTD---DNPRS-EDPEKI----RAEIIHGIPGFIEKGNRIEAIRTAIEM 455
           ++   L D+   T    D   S E  +KI      +I H +       +   A RT    
Sbjct: 340 EVLAPLVDVWSFTSLQTDRSASGEGLKKIFVEQVQQISHPLAYAKHFDSVESAWRTISAE 399

Query: 456 LNKQDVLVVAG 466
           + + DV++V G
Sbjct: 400 ICQGDVVIVFG 410


>gi|294635007|ref|ZP_06713524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
 gi|291091606|gb|EFE24167.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
          Length = 438

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 126/402 (31%), Gaps = 62/402 (15%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    +   I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALSSPALDQAAQAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++   +G      G                   + L         Q      +
Sbjct: 118 TVTTLVGEMAHAAGWPVGVGGNIGVP-------------ALTL-------LKQECRLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH++ +      + A      E           
Sbjct: 158 ELSSFQLET--THSLKAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYEQARACVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           + VG         ++          +  E         L 
Sbjct: 213 ADDALTMPIHGADARCVSFGVDVGDYHLNRQQGEIWL-------RVRGEKILNTSEMQLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+G+  A  L  L     +  RF+ V  ++    I    A    
Sbjct: 266 GMHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRFQLVLDHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM----GKIALDLADIAIVTDDNPRSE 423
           S E     ++ +     + +   G  +     P++    G+                R  
Sbjct: 326 STEA---ALKGLHLNGTLHLLLGGDGKAADFTPLLPYLQGERIRLYC--------FGRDA 374

Query: 424 DP-EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           DP  ++R E+       +      +A+R     L   D++++
Sbjct: 375 DPLMQLRPEVS------LRFTTMEQAMRAITPQLRSGDMVLL 410


>gi|255522108|ref|ZP_05389345.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J1-175]
          Length = 326

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 95/302 (31%), Gaps = 22/302 (7%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q      K      TN+  DH DY ++    FNA   L ++       A+    D     
Sbjct: 34  QRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQ----VKKAVFALGDDAE-- 87

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + K   +        G + +F     +      +            F  P  G+  V NA
Sbjct: 88  LRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNA 147

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L    LC   G+    V + L+    V  RF           +  DYAH  + +   +  
Sbjct: 148 LSVIALCDYEGLPVEDVKKELKTFEGVKRRFSIT--EKANQVLVDDYAHHPSEIRATVNA 205

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTD--DNPRSEDPEKIRAEI 432
            R     + +V         + +  + G   +L+LAD   + D   + R +      A++
Sbjct: 206 ARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADL 265

Query: 433 IHGIPGFIEKGNRIEAIRTAIEMLN-KQDVLVVAGKGH-ETVHIVTNGEKKMSVDCDIIR 490
            H   G               E+L   + V++  G G  +              D +++ 
Sbjct: 266 AHKTKGNHIIKE-----EHTEELLKYPEAVILFMGAGDVQKFQAAYEKVL----DHEVLT 316

Query: 491 EI 492
           E 
Sbjct: 317 EA 318


>gi|171463032|ref|YP_001797145.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192570|gb|ACB43531.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 59/366 (16%), Positives = 114/366 (31%), Gaps = 41/366 (11%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQ----IGPTSTISSFAQDNRLTTPSPIYL 170
           +++LAV GT GK++ ++ +  I + +G         +    T+S++  +++         
Sbjct: 106 KHVLAVAGTHGKTTTSAMLTWILEFNGYKPGYLIGGVPLNFTVSAYLGESKYFVIEADEY 165

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
             A     S+ V +    A                     NL  DH D      A    +
Sbjct: 166 DTAFFDKRSKFVHYRPRTA------------------LLNNLEFDHADIFADLAAIE-TQ 206

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
                  +P +   ++  ++     V+ R   A           ++  + +       ++
Sbjct: 207 FHHLVRTVPGDGLLVVNGEEPALASVITRGAWAPVERFGQESVNEWSLISQEADGFIVRK 266

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
               V    +     + G     NAL A      IGI  A     L +   V  R E +G
Sbjct: 267 SGKEVATVKWAPDSGVMGRHNQLNALAAIASANHIGISPADSAFALVEFKNVKRRLETIG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMGKIALDL 409
             +    IY D+AH   ++   +  +R      RI+ V        +     +G +   L
Sbjct: 327 VAN-DVTIYDDFAHHPTAITTTVDGLRRRVGNARILAVLEP-----RSNTMKLGVMKAQL 380

Query: 410 ------ADIAIVTDDNPRSEDPEKIRAEIIHGIP-----GFIEKGNRIEAIRTAIEMLNK 458
                 AD       N   E      AE++  +            +    ++        
Sbjct: 381 PSSLEAADKVFAYSANSGKESLGWDLAEVLSPLNQQEQWKAHAFDDLELLVKAVALEAKP 440

Query: 459 QDVLVV 464
            D ++V
Sbjct: 441 GDHILV 446


>gi|116333861|ref|YP_795388.1| folylpolyglutamate synthase [Lactobacillus brevis ATCC 367]
 gi|116099208|gb|ABJ64357.1| Folylpolyglutamate synthase [Lactobacillus brevis ATCC 367]
          Length = 440

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 116/407 (28%), Gaps = 45/407 (11%)

Query: 98  TRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISS 155
           T   +  F  RL G   E   ++ V GT+GK S  +F++ +    G +            
Sbjct: 23  TLDRMREFMRRL-GNPQEKLTMIHVAGTNGKGSTVAFLRDLFMAEGQTVGTFTSPFITRF 81

Query: 156 FAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG--------------LDQHRLDG 201
             + +   TP       A++      V  +  E + +G                QH +D 
Sbjct: 82  NERISTDGTPISDDDLVAMTQQVQPVVAQLDQELAENGPTEFEIDTALMFCYFAQHPVDM 141

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE------ 255
           + +  G        +I               +          A   A     +       
Sbjct: 142 VIVEVGLGGLYDSTNIITPAVSVITTIGLDHMKILGDTIPEIAAQKAGIIKPQVPVICGR 201

Query: 256 -----VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                +      A  +   +   G+   +         ++   + +   +  L       
Sbjct: 202 LTPEALAVMDQTAAAKSAMIVALGRDFQVTNQPHDQWGERFGFAFKTNRWQHLQIDLLGQ 261

Query: 311 QVYNALVAAGLCIAIGIDSALVLEHLEKLHV------VPGRFEFVGTNSRGGRIYVDYAH 364
              +    A     +      +   +  +         PGRFE V   +    + +D AH
Sbjct: 262 YQIDNAATALTAFLVYHQQRQLPVSVTTIRQGLSHTAWPGRFERV---NEQPLMVIDGAH 318

Query: 365 TSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTD---DN 419
              ++  + + +R     R + V+     D+       M K  L + +   +VT      
Sbjct: 319 NEPAMVEMAQLLRQHFGDREVYVILAILADKQYQ---QMVKTLLQVPNVHVVVTQFQGPG 375

Query: 420 PRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            R         +            +   A++  +  ++ +DV+++ G
Sbjct: 376 KRQAASPDALEQAATTHERLSSAPDWPSALKQVLATMSAEDVVLLTG 422


>gi|332304541|ref|YP_004432392.1| UDP-N-acetylmuramate [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171870|gb|AEE21124.1| UDP-N-acetylmuramate [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 436

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 117/361 (32%), Gaps = 43/361 (11%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
              +LAV+GT GK+S +S +  I + +G+   F IG        +     T    I   +
Sbjct: 90  DRWVLAVSGTHGKTSTSSMLAWILESAGMSPGFLIGGIPQNFGISARLGETPFFVIEADE 149

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             S    +    V                 +       NL  DH D   +       +  
Sbjct: 150 YDSAFFDKRSKFV---------------HYRPRTLVINNLEFDHADIFDSIADIQK-QFH 193

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               ++P     I    D +  +V+ +   +  + +   ++               +  +
Sbjct: 194 HLIRMIPGNGLVIAPKADTHITQVLDKGCWSPVQFVGSDWKVAECAADGSEFDVVYKGTS 253

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
                      + L G+  V NA++A       G+   + +E L        R E +G  
Sbjct: 254 F------GRVKWSLLGQHNVQNAMMAIIAARHAGVLPEVAIEALTNFVNAKRRMEVLG-T 306

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMG----KIAL 407
             G  +Y D+AH   ++   L+ +R  +   RI+ V        +     MG     +A 
Sbjct: 307 VNGITVYDDFAHHPTAISTTLEGLRAKVGKARILAVLEP-----RSNTMKMGVHKQTLAQ 361

Query: 408 DL--ADIAIVTDDNPRSEDPEKIRA--EIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               AD   +   +  S   + + A  E+   +   +E        ++ +      D ++
Sbjct: 362 SWSAADQVFIYQPSHLSWSMDALLAQSEVTTSLHDDLEILE-----KSILSYAKPGDHIL 416

Query: 464 V 464
           +
Sbjct: 417 I 417


>gi|322515501|ref|ZP_08068487.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Actinobacillus ureae
           ATCC 25976]
 gi|322118468|gb|EFX90719.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Actinobacillus ureae
           ATCC 25976]
          Length = 454

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 77/270 (28%), Gaps = 18/270 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                     N+  DH D     +A    +       +P     +  A D   +  +K  
Sbjct: 178 HYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLIRTMPSSGCILSAAADENVQNTLKMG 236

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
             +  +              K  +             K  +  + + GE  ++NAL+   
Sbjct: 237 SYSELQF----IGEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGEHNMHNALMTIA 292

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
                G+  A   E L        R E  G    G  +Y D+AH   ++   +  +R   
Sbjct: 293 AAHHAGVSVAGACEALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAIAATIDALRGKV 351

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSEDPEKIRAEIIH 434
                ++       +  K   MG    +IAL L D     V   +        I   +  
Sbjct: 352 GKEQRILAVLEPRSNTMK---MGVHKEEIALSLGDANAVFVYQPDTIPWSVSVITDSLSQ 408

Query: 435 GIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    N  E +   I+     D ++V
Sbjct: 409 PAAWS---ANLDELVALVIKEAKPNDHILV 435


>gi|289554061|ref|ZP_06443271.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
 gi|289438693|gb|EFD21186.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
          Length = 438

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 89/425 (20%), Positives = 143/425 (33%), Gaps = 55/425 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           GA A+V + A   +     + +     P+++        ++ A  + G+     L VTGT
Sbjct: 17  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRP------AVLAKLMAGR---TTLMVTGT 67

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +    Q  GL          +     +    +                   
Sbjct: 68  HGKTTTTSMLIVALQHCGLD-PSFAVGGELGEAGTNAHHGSGD---------------CF 111

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S   L Q+            TN+  DH+D++ + +AY  A    F E +     
Sbjct: 112 VAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGA 165

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTIS 294
            ++  DD     + +RA   G RVL  G          + +          H +    ++
Sbjct: 166 LVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELA 225

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG     NAL A    + IG  +  VL+ L     V  RFE VGT   
Sbjct: 226 TAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGV 285

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMGKIA 406
           G    R++ DYAH    +   L   R +      GR +VVF      R +      G+ A
Sbjct: 286 GKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGR-A 344

Query: 407 LDLADIAIVTDDNPRSEDPEKIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLV 463
           L+ AD   V D     E P      A +   +        +     +      +  DV+V
Sbjct: 345 LNAADEVFVLDVYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIV 404

Query: 464 VAGKG 468
             G G
Sbjct: 405 TMGAG 409


>gi|237742550|ref|ZP_04573031.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|229430198|gb|EEO40410.1| UDP-N-acetylmuramate-alanine ligase [Fusobacterium sp. 4_1_13]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 126/392 (32%), Gaps = 41/392 (10%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           +GA+ ++ S+A    +   +   N  I     T        ++L  +  E  +A+ GT G
Sbjct: 67  KGADYVIASTAIKETNPELSYAKNNGI-----TLLKRGELLAKLLNR--ETGIAIAGTHG 119

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +      +    G    I S A+  +            ++       + +
Sbjct: 120 KTTTSSMLSAVMLSKDPTIVVGGILPEIKSNAKPGKSE--------YFIAEADESDNSFL 171

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +                      TN+  DH+D H        + +        +    +
Sbjct: 172 FM---------------NPKYAVITNIDADHLDVHGNLDNIKKSFIEFISHTQKEAIICM 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
              +   +   + +  +     +       F    ++       ++ I+ E    +F   
Sbjct: 217 DCENLKEAITRLPKGKSVITYSIKDENASIFAKNIRITDRKTIFELYINKEL-IGEFSLN 275

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEF---------VGTNSRGG 356
           +PGE  + N+L    L +   +    + E L K      R++           G  ++  
Sbjct: 276 IPGEHNIQNSLPVIYLALKFRVSKEEIQEALNKFKGSKRRYDVLFDKELENGYGNKTKKV 335

Query: 357 RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416
           RI  DYAH    ++  LK I++I + R++ +F               K A    D  I+ 
Sbjct: 336 RIIDDYAHHPTEIKATLKAIKSIDTSRLVAIFQPHRYSRVHFLLDEFKDAFKDVDKVILL 395

Query: 417 DDNPRSEDPE-KIRAEIIHGIPGFIEKGNRIE 447
                 E  E  I +EI+             E
Sbjct: 396 PIYAAGEKNEFNISSEILKEHINHNNIEVMNE 427


>gi|329944581|ref|ZP_08292721.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328530134|gb|EGF57017.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 525

 Score = 44.1 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 48/151 (31%), Gaps = 12/151 (7%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
           + A +   L        RFE  G    G R+  DYAH    +E +L   R +   R   V
Sbjct: 346 EPAEMARALGSFGGTGRRFEDRGQAH-GVRVIDDYAHHPTEIEALLHTAREVAQERRGRV 404

Query: 388 FGCGG----DRDQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHG---IP 437
                     R +      G+       +  V D  P  E   D   I  E +       
Sbjct: 405 LVLFQPHLFSRTRTFADRFGQALALADVVV-VADVYPARENQADFPDITGETVAQRVPGD 463

Query: 438 GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
             +   +R +A  T        D+L+  G G
Sbjct: 464 RAVFVADRQDAAHTLAAQARPGDLLLTVGAG 494


>gi|240104632|pdb|3HN7|A Chain A, Crystal Structure Of A Murein Peptide Ligase Mpl
           (Psyc_0032) From Psychrobacter Arcticus 273-4 At 1.65 A
           Resolution
          Length = 524

 Score = 44.1 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 92/340 (27%), Gaps = 31/340 (9%)

Query: 143 SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGI 202
            S  +G     S  + +             A     S+ V +    A  + L+    D  
Sbjct: 174 HSSYLGTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIF 233

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
             +    T           T +    A     E+ L K     I+        +      
Sbjct: 234 ADLDAIQTQFHHXVRXIPSTGKIIXPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRRE 293

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGL 321
                 S          + + A  ++  V+ +   +      +   G   V NALVA   
Sbjct: 294 DSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSXSGLHNVNNALVAIAA 353

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK-NIRTIT 380
              IG+        L     +  R E +G +     ++ D+AH   ++   L    + + 
Sbjct: 354 AYNIGVSVKTACAALSAFAGIKRRXELIG-DVNDILVFDDFAHHPTAITTTLDGAKKKLA 412

Query: 381 SGRIIVVFGCGGDRDQ-GKRPIMGKIALDLADI---------------AIVTDDNPRSED 424
             R+  +     +  + G        +  LAD                 I   DN    +
Sbjct: 413 DRRLWAIIEPRSNTXKXGIHQDSLAQSATLADHTLWYEPTGLEWGLKEVI---DNATIAN 469

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           P     +++  +            I+         D +V+
Sbjct: 470 PSIGSQQVLSSVDDI---------IKHICTHAKAGDAIVI 500


>gi|194289782|ref|YP_002005689.1| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase
           [Cupriavidus taiwanensis LMG 19424]
 gi|226740718|sp|B3R2A7|LPXD_CUPTR RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|193223617|emb|CAQ69624.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 363

 Score = 44.1 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 10  DFPELINQLSIFPMQWRERKINEVS-SDSRHIQAGWI-FVAIVGNKEDGHLFIPQAIAQG 67
              +L  +     +   +  I  ++  D      G + F++         L++ QA+   
Sbjct: 5   TLGQLATENGAQVVGDPDLAITGLAPLD--QAGPGELSFLSNP-------LYLQQALDAK 55

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A A++VS+A   +  +         LV  N     +  A R       N  A TG   ++
Sbjct: 56  AGAVIVSAADLERVRAEGKADGRNWLVARNPYVCFARVAQRFDR--AANTDARTGIDARA 113

Query: 128 SVA 130
           +VA
Sbjct: 114 TVA 116


>gi|297583733|ref|YP_003699513.1| FolC bifunctional protein [Bacillus selenitireducens MLS10]
 gi|297142190|gb|ADH98947.1| FolC bifunctional protein [Bacillus selenitireducens MLS10]
          Length = 406

 Score = 44.1 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 19/164 (11%)

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
             A  L       +  V++   +   VPGRFE V        + VD AH   ++   + N
Sbjct: 252 AAAIALEAFGMSMADSVMQAAIRDLQVPGRFEEVRYEPA---VIVDTAHNVEAIRTTIAN 308

Query: 376 IRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEII 433
           IRT+ + + + V F    D+       M K   +     +VTD  +PR+   E       
Sbjct: 309 IRTLYASKEVSVLFAAMQDKPVS---AMLKAFQEAGLKPVVTDFSHPRAMKQE------- 358

Query: 434 HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477
                +    +    ++  ++    +DVL++ G    +   + +
Sbjct: 359 AYPKPYERAADAKSWVKAHLKEAASEDVLLITG----SHQFIGD 398


>gi|134294696|ref|YP_001118431.1| UDP-N-acetylmuramate [Burkholderia vietnamiensis G4]
 gi|134137853|gb|ABO53596.1| UDP-N-acetylmuramate [Burkholderia vietnamiensis G4]
          Length = 461

 Score = 44.1 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 103/356 (28%), Gaps = 24/356 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 103 KWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +       NL  DH D      A       L
Sbjct: 163 DTAFFDKRSKFV---------------HYRPRTAVLNNLEYDHADIFPDLAAIETQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +            DA  + + +   +   R    G          V         + 
Sbjct: 208 VRTVPRVGRIVTNGRSDALERVLARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSQ 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +  +     G+    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 268 AQRVGEVAWQVQ--GDHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         +      R    K  +M  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIETTIAGLRARIGREHSRILAVLEPRSNTMKLGVMKAQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +     P   D     +   +           +    ++  +      D ++V
Sbjct: 385 ADLVFGYGAPSGRDALGWNLGDALAPLGAKAHAFDDLHLLVKAVVAAARPGDHVLV 440


>gi|170727323|ref|YP_001761349.1| FolC bifunctional protein [Shewanella woodyi ATCC 51908]
 gi|169812670|gb|ACA87254.1| FolC bifunctional protein [Shewanella woodyi ATCC 51908]
          Length = 421

 Score = 44.1 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
            +D AH  ++   +   ++   S R+  + G   D+D      + K+  +  D  + T  
Sbjct: 302 ILDVAHNPHAARYLATQLKRFKSKRLFALCGMLKDKDTS---EVIKVLEEQVDYWVFTAL 358

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +  RS DP++++A +           +   A      +L   D ++V G
Sbjct: 359 ETDRSADPKQLQAALSATGSSSHY-ASLGVAWSELSALLTPDDAVIVFG 406


>gi|49474458|ref|YP_032500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           quintana str. Toulouse]
 gi|62900524|sp|Q6G122|MURD_BARQU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49239962|emb|CAF26367.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           quintana str. Toulouse]
          Length = 466

 Score = 43.7 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 106/348 (30%), Gaps = 53/348 (15%)

Query: 91  PILVVDNTRKF---------LSLFASRLYGKHPE------NILAVTGTSGKSSVASFVQQ 135
           P  VVD  R+          L + A   + +H          +A+TGT+GKS+  + +  
Sbjct: 82  PHWVVDKARQADIEIVGDIELFVRARNHFLQHSGFRDQDVPFIAITGTNGKSTTTALLAH 141

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           + ++ G      G   T     +                            +E SS  ++
Sbjct: 142 LLEQMGYDVQMGGNIGTAILTLKPF-------------------VKKRIYVIECSSFQIE 182

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++   G   NL  DHID H +  AY  AK RL                 A  ++
Sbjct: 183 L--TPSLQPTIGLLLNLTSDHIDRHGSFAAYVQAKRRLVTGASYAFISVDNAVCQALYQQ 240

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++   H  G        +  F   +       + Q  +  +  D   L    G     NA
Sbjct: 241 LLDEGHQVGAVSKEHFVENGFYADRTKLFSVCQGQRHMLADLADMTALR---GSHNAQNA 297

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L+      A+ I    + ++L     +  R + V        I    A  + +    L  
Sbjct: 298 LMVLATLQALKISDPHIEKYLASYKGLAHRMQQVRKMGPVLFINDSKATNAEASAPALST 357

Query: 376 IRTITSGRIIVVFGCGGDRDQG----------KRPIMGKIALDLADIA 413
              I      +V G   +              K  ++G+ A + A + 
Sbjct: 358 FNDI----FWIVGGQAKEGGIEALRGFFHKIRKAYLIGEAAQEFAGVI 401


>gi|15616833|ref|NP_240045.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681586|ref|YP_002467972.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471272|ref|ZP_05635271.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133466|sp|P57310|MURC_BUCAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765987|sp|B8D913|MURC_BUCA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293621|pir||C84955 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) [imported] -
           Buchnera sp. (strain APS)
 gi|10038896|dbj|BAB12931.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219624429|gb|ACL30584.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 484

 Score = 43.7 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 132/409 (32%), Gaps = 49/409 (11%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
           + ++  A  + N PIL     R  +            +  +AV+GT GK++  S +  I 
Sbjct: 90  NNKEILAAKKRNIPIL----LRAEMIEILMSF-----KKGIAVSGTHGKTTTTSMIADIF 140

Query: 138 QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH 197
             SGL    I     I S     +L + S        S  S                   
Sbjct: 141 IDSGLDPTVI-NGGLIKSINSYAKLGSSSYFITEADESDASFLY---------------- 183

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVM 257
               +       TN+  DHID++            +F + +     AI+  D+    +++
Sbjct: 184 ----LNPNIIIVTNIEPDHIDHYDNSFKKLKQTFLIFLKKITLYGTAIVCIDNNAICDIL 239

Query: 258 KRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALV 317
                              I L K         + +    K  + +  +PG+    NA  
Sbjct: 240 TNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNN-KKLNIILNIPGKHNALNAAA 298

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSRGGRIYVDYAHTSNSL 369
           A  L I  GI++ L++  L+       RFEF+G               +  DY H    L
Sbjct: 299 AIALAIHEGINNDLMIASLKNFQGTCRRFEFLGFLSIDQGFDKRANCMLIDDYGHHPTEL 358

Query: 370 EMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSE---- 423
              +K IR     + +++        R         +      D+ ++      +E    
Sbjct: 359 SETIKTIRISWPNKNLIMIFQPHRYTRTYNLYHDFVQTLSQ-VDVLLILHVYSANEKFIV 417

Query: 424 --DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             D   +  +I      ++    N    + T I+ L   D++++ G G+
Sbjct: 418 GADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQGAGN 466


>gi|165976826|ref|YP_001652419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876927|gb|ABY69975.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 454

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 167 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSGGCILSAAA 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 226 DENVQNTLKMGSYSELQF----IGEDKQWFTKPISADCSHFEVFHKGEKAGEVKWNIIGA 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G    G  +Y D+AH   ++
Sbjct: 282 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAI 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  L D     V   +    
Sbjct: 341 AATINALRGKVGKEQRILAVLEPRSNTMK---MGLHKEEIAPSLVDANAVFVYQPDTIPW 397

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 398 AVSVITDNLTQPAKWS---ADLDELVKMIVEEAKPTDHILV 435


>gi|163752976|ref|ZP_02160100.1| UDP-N-acetylmuramate--L-alanine ligase [Kordia algicida OT-1]
 gi|161326708|gb|EDP98033.1| UDP-N-acetylmuramate--L-alanine ligase [Kordia algicida OT-1]
          Length = 450

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 5/154 (3%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY-NALVAAGLCIAIGIDSALVLEH 335
            H+K +   H      I    K  + +           N LVA  +   IG  +  + + 
Sbjct: 240 YHIKNIRIKHGAYVFEIVTPSKIIEDVQFYIPGRHNLLNGLVAFAMADIIGTPTDRLAKA 299

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--D 393
           L     V  RF              DYAH    +  + + +R +   + +          
Sbjct: 300 LGTFAGVKRRF-SYQIKKTDFVFIDDYAHHPTEINALHQAVREMYPEKKVTAIFQPHLFS 358

Query: 394 RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           R +       +      D  I+ +  P  E P +
Sbjct: 359 RTRDFADEFAESLAQF-DEIILLEIYPAREKPIE 391


>gi|71083191|ref|YP_265910.1| FolC bifunctional protein (folylpolyglutamate
           synthase/dihydrofolate synthase) [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062304|gb|AAZ21307.1| FolC bifunctional protein (Folylpolyglutamate
           synthase/Dihydrofolate synthase) [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 422

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 59/425 (13%), Positives = 126/425 (29%), Gaps = 50/425 (11%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVAS 131
           +V     L      +  +       N  + L         +   N +++ GT+GK S   
Sbjct: 6   IVERLQKLHPKEIDLSLD----RTKNLLEKLG------NPQDQINCISIVGTNGKFSTIQ 55

Query: 132 FVQQICQRSGLSSFQIGPTSTISSFA----QDNRLTTPSPIYLA--KALSYLSSQGVTHV 185
            +  I + +                      +  LT      L      +   +Q     
Sbjct: 56  ALYAILKEADYKCNIYTSPHIQKINERFVFNNKPLTDDELANLFSEVEEANNQTQITFFE 115

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +     +   + I LI     +         +   +   A      + LPKE   +
Sbjct: 116 ILTVAYFHYAKKYPENINLIESGLFHRFDATNILKKNLASIVTAIGLDHLDWLPKEEQTV 175

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF--- 302
                  +  ++        +  +   +     +K   +         +   K+ DF   
Sbjct: 176 EKIIFEKTSTLLNSKIVVAKQSSNEISKSIENTIKDNTSKKIIFNKNYNFTLKENDFFYF 235

Query: 303 ----------LFPLPGEFQVYNALVAAGLCIA--IGIDSALVLEHLEKLHVVPGRFEFVG 350
                        LPGEFQ+ N   A            +   ++          R + + 
Sbjct: 236 EDEFGALKLPKPNLPGEFQLENVSTAIATVRQLTDYKITDEHIKSGITKIESIARLQELK 295

Query: 351 TNS-----RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKI 405
           +           ++VD +H     +++ + ++++   + I + G   ++D        + 
Sbjct: 296 SGKLKDLTSNNLLFVDGSHNPLGAKVLNEYLQSLNCNKHI-ILGMMANKDHN------EY 348

Query: 406 ALDLADIAIVTD-DNPRSEDPEKIR-AEIIHGIPGFIEKGNRIEAIRTAIE--MLNKQDV 461
                DI  +T  D P    P  I+ +E+   I  F    N   +I  AI    L + D+
Sbjct: 349 MSYFKDIKSLTTIDIPNQ--PNAIKGSELKEKIKNFENI-NYKNSIEEAISSIDLQENDI 405

Query: 462 LVVAG 466
           +++ G
Sbjct: 406 ILITG 410


>gi|15799775|ref|NP_285787.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           EDL933]
 gi|15829349|ref|NP_308122.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. Sakai]
 gi|26246024|ref|NP_752063.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli CFT073]
 gi|91209155|ref|YP_539141.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UTI89]
 gi|157154862|ref|YP_001461261.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli E24377A]
 gi|157159562|ref|YP_001456880.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli HS]
 gi|168751399|ref|ZP_02776421.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755699|ref|ZP_02780706.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764030|ref|ZP_02789037.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771315|ref|ZP_02796322.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776935|ref|ZP_02801942.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781976|ref|ZP_02806983.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789618|ref|ZP_02814625.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801518|ref|ZP_02826525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|170683694|ref|YP_001742213.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SMS-3-5]
 gi|193065876|ref|ZP_03046937.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|193070828|ref|ZP_03051761.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194429353|ref|ZP_03061878.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194434422|ref|ZP_03066684.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194439419|ref|ZP_03071496.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|195939307|ref|ZP_03084689.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806463|ref|ZP_03248800.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812324|ref|ZP_03253653.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819975|ref|ZP_03260295.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400617|ref|YP_002268699.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215485257|ref|YP_002327688.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325189|ref|ZP_03441273.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552674|ref|YP_002385587.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI1]
 gi|218557031|ref|YP_002389944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli S88]
 gi|218687968|ref|YP_002396180.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ED1a]
 gi|218693560|ref|YP_002401227.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 55989]
 gi|237704240|ref|ZP_04534721.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|253774879|ref|YP_003037710.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160213|ref|YP_003043321.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|254791228|ref|YP_003076065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|256020071|ref|ZP_05433936.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sp. D9]
 gi|260842327|ref|YP_003220105.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260866244|ref|YP_003232646.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261226848|ref|ZP_05941129.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255252|ref|ZP_05947785.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291280916|ref|YP_003497734.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|293417967|ref|ZP_06660589.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|293476751|ref|ZP_06665159.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|297518216|ref|ZP_06936602.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli OP50]
 gi|300816129|ref|ZP_07096352.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|300821904|ref|ZP_07102048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300931782|ref|ZP_07147082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300938486|ref|ZP_07153226.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300981128|ref|ZP_07175374.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|301048483|ref|ZP_07195508.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|306815311|ref|ZP_07449460.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|312966219|ref|ZP_07780445.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|331661137|ref|ZP_08362069.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331666328|ref|ZP_08367209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331680665|ref|ZP_08381324.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332281221|ref|ZP_08393634.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|54037856|sp|P65471|MURC_ECO57 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041506|sp|P65470|MURC_ECOL6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122425020|sp|Q1RGA4|MURC_ECOUT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017280|sp|A7ZHI2|MURC_ECO24 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017281|sp|A7ZW43|MURC_ECOHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706321|sp|B5YZC7|MURC_ECO5E RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711864|sp|B7MAL4|MURC_ECO45 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711866|sp|B7M134|MURC_ECO8A RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711868|sp|B1LG28|MURC_ECOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766001|sp|B7UIE1|MURC_ECO27 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766002|sp|B7LFW1|MURC_ECO55 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766003|sp|B7MNV0|MURC_ECO81 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12512797|gb|AAG54395.1|AE005186_1 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Escherichia coli O157:H7 str. EDL933]
 gi|26106421|gb|AAN78607.1|AE016755_107 UDP-N-acetylmuramate--alanine ligase [Escherichia coli CFT073]
 gi|13359551|dbj|BAB33518.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli O157:H7 str.
           Sakai]
 gi|91070729|gb|ABE05610.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli UTI89]
 gi|157065242|gb|ABV04497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli HS]
 gi|157076892|gb|ABV16600.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E24377A]
 gi|170521412|gb|ACB19590.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli SMS-3-5]
 gi|187767764|gb|EDU31608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014538|gb|EDU52660.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000410|gb|EDU69396.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357039|gb|EDU75458.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359896|gb|EDU78315.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365892|gb|EDU84308.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370793|gb|EDU89209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376362|gb|EDU94778.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|192926463|gb|EDV81096.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|192955858|gb|EDV86328.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194412573|gb|EDX28870.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194417338|gb|EDX33445.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194421678|gb|EDX37688.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|208726264|gb|EDZ75865.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733601|gb|EDZ82288.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740098|gb|EDZ87780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162017|gb|ACI39450.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746534|gb|ACI71574.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746536|gb|ACI71575.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746538|gb|ACI71576.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746540|gb|ACI71577.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746542|gb|ACI71578.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|215263329|emb|CAS07644.1| UDP-N-acetylmuramate: L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217321410|gb|EEC29834.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350292|emb|CAU95975.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli 55989]
 gi|218359442|emb|CAQ96980.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI1]
 gi|218363800|emb|CAR01460.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli S88]
 gi|218425532|emb|CAR06315.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli ED1a]
 gi|222031922|emb|CAP74660.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli LF82]
 gi|226902152|gb|EEH88411.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|242375927|emb|CAQ30608.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli BL21(DE3)]
 gi|253325923|gb|ACT30525.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972114|gb|ACT37785.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|253976323|gb|ACT41993.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli BL21(DE3)]
 gi|254590628|gb|ACT69989.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|257757474|dbj|BAI28971.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257762600|dbj|BAI34095.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281177311|dbj|BAI53641.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE15]
 gi|284919871|emb|CBG32926.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli 042]
 gi|290760789|gb|ADD54750.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|291321204|gb|EFE60646.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|291430685|gb|EFF03683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|294492769|gb|ADE91525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli IHE3034]
 gi|300299669|gb|EFJ56054.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|300409030|gb|EFJ92568.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|300456555|gb|EFK20048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300460442|gb|EFK23935.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300525504|gb|EFK46573.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300531336|gb|EFK52398.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|305850973|gb|EFM51428.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|307629665|gb|ADN73969.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UM146]
 gi|312289462|gb|EFR17356.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|312944697|gb|ADR25524.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315285163|gb|EFU44608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 110-3]
 gi|315294714|gb|EFU54057.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 153-1]
 gi|315300008|gb|EFU59246.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 16-3]
 gi|320179653|gb|EFW54602.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii ATCC 9905]
 gi|320190386|gb|EFW65036.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197458|gb|EFW72072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli WV_060327]
 gi|320642130|gb|EFX11481.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. G5101]
 gi|320647493|gb|EFX16288.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. 493-89]
 gi|320652827|gb|EFX21065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. H 2687]
 gi|320658216|gb|EFX25945.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663525|gb|EFX30809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668837|gb|EFX35632.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323160111|gb|EFZ46072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E128010]
 gi|323171254|gb|EFZ56902.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli LT-68]
 gi|323176399|gb|EFZ61991.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1180]
 gi|323935143|gb|EGB31510.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1520]
 gi|323945720|gb|EGB41768.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H120]
 gi|323950913|gb|EGB46790.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H252]
 gi|323955289|gb|EGB51062.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H263]
 gi|323960037|gb|EGB55683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H489]
 gi|323964813|gb|EGB60280.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli M863]
 gi|323970763|gb|EGB66017.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TA007]
 gi|323975745|gb|EGB70841.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TW10509]
 gi|324008326|gb|EGB77545.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 57-2]
 gi|324118441|gb|EGC12335.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1167]
 gi|326345189|gb|EGD68932.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1125]
 gi|326346957|gb|EGD70691.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1044]
 gi|327255069|gb|EGE66672.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli STEC_7v]
 gi|331052179|gb|EGI24218.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331066539|gb|EGI38416.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331072128|gb|EGI43464.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332095382|gb|EGJ00405.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 5216-82]
 gi|332097809|gb|EGJ02782.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 155-74]
 gi|332103573|gb|EGJ06919.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|332341423|gb|AEE54757.1| UDP-N-acetylmuramate--alanine ligase MurC [Escherichia coli UMNK88]
          Length = 491

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|227113985|ref|ZP_03827641.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 486

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 130/423 (30%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA +  +       +   P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVI-----RRAEMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQ 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E++ R                 I             +    +       
Sbjct: 227 AVMCIDDAVIRELLPRVGRHITTYGFSDDADVRISGYHQTGAQGHFTLERKDKP-LLTVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  A  +    GID   +L  LE+      RF        E V   S  
Sbjct: 286 LNAPGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTGRRFDFLGEYPLELVNGQSGT 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + +V+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         + L  +D+++V G
Sbjct: 405 LMLDVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTDVDTLPELLSQALRGEDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|167614206|gb|ABZ89709.1| UDP-N-acetylmuramate--L-alanine ligase [Buchnera aphidicola]
          Length = 476

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 95/285 (33%), Gaps = 19/285 (6%)

Query: 202 IKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261
           +    G  TN+  DH+D++             F + +P    AI+  D+    +++    
Sbjct: 184 LNPKIGIITNIEDDHMDHYDNNFIKLKQAFLTFLKKIPLNGTAIVCIDNDAICDILPYIK 243

Query: 262 NAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL 321
                          I+  K        Q+ I  + K  +    +PG+    NA  A  L
Sbjct: 244 CKILTYGFNKNADFHIYSYKQDGFIGYLQIIIKHQIK-LNITLNIPGKHNALNATAAVVL 302

Query: 322 CIAIGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYVDYAHTSNSLEMIL 373
            I   I    ++  L+       RFEF+G           +   +  DY H    L   +
Sbjct: 303 AIHEKIKHYNIIASLKNFQGTCRRFEFLGKYSIKKNIIKRQPTMLIDDYGHHPTELSETI 362

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIVTDDNPRSE------DP 425
             IRT      +++        +         KI     D+ ++ +    +E      D 
Sbjct: 363 NTIRTGWPNNNLIMIFQPHRYTRTHNLYHDFVKILSK-VDVLLILNVYSANEKYILGADS 421

Query: 426 EKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
             +  +I      +I    +    + T I  LN  D++++ G G+
Sbjct: 422 FSLYNDIKKCKKKYIYFIPDHNLILDTLIPRLNGNDIILIQGAGN 466


>gi|251788991|ref|YP_003003712.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Dickeya zeae Ech1591]
 gi|247537612|gb|ACT06233.1| FolC bifunctional protein [Dickeya zeae Ech1591]
          Length = 422

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 55/373 (14%), Positives = 103/373 (27%), Gaps = 34/373 (9%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    +  V GT+GK +    ++ I   +GL                 + L     + + 
Sbjct: 46  QPAPRVFTVAGTNGKGTTCCTLESILSAAGLRVGVYSS---------PHLLRYTERVRIQ 96

Query: 172 KALSYLSSQGVTHVSVEASSHGL-----DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
                         +VEA  +G+     +   L  + L   +  ++    +       A 
Sbjct: 97  GRELPEFHHAQAFAAVEAGRNGISLTYFEFGTLAALWLFKQAQLDVVILEVGLGGRLDAT 156

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI--------- 277
                 +               +D  S    K     G R   VG     +         
Sbjct: 157 NIVDADVAVVTSIALDHTDWLGNDRESIGREKAGIFRGNRPAVVGEPDMPVSIAAVAQET 216

Query: 278 --HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             HL +  A             +  D  +       V  A  A  L      D AL  E 
Sbjct: 217 GAHLFRRGADWQFALQGDGWRWQCDDVQYDALPVPTVPLANAATALAALYASDIALTTEV 276

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-GRIIVVFGCGGDR 394
           + +              S    + +D AH  ++   +   +  +   G++  V G   D+
Sbjct: 277 IRQGLRQAQLPGRFQIVSEKPLLILDVAHNPHAAAYLAARLADLPRTGQVRAVVGMLADK 336

Query: 395 DQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D    P          D+      + PR         ++   +    +  +   A R A+
Sbjct: 337 DI---PGTLAHLKPQVDVWYCAPLEGPRG----AGAGQLAEHLADCTQYPDVATAWRQAM 389

Query: 454 EMLNKQDVLVVAG 466
               + DV++V G
Sbjct: 390 RDAGENDVVIVCG 402


>gi|41407994|ref|NP_960830.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|48428301|sp|P61681|MURC_MYCPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|41396348|gb|AAS04213.1| MurC [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 496

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 49/180 (27%), Positives = 64/180 (35%), Gaps = 14/180 (7%)

Query: 302 FLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG-----G 356
               +PG     NA+ A    I IG  +  VL+ L     V  RFE VGT          
Sbjct: 292 MRLSVPGRHMALNAMGALLAAIEIGAPTEAVLDGLAGFEGVRRRFELVGTAGGPAPSSTV 351

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS----GRIIVVFG-CGGDRDQGKRPIMGKIALDLAD 411
           R++ DYAH    +   L  +RT+      GR I VF      R +      G+ ALD AD
Sbjct: 352 RVFDDYAHHPTEIAATLAAVRTLLEQSGGGRSIAVFQPHLYSRTKAFAEEFGR-ALDAAD 410

Query: 412 IAIVTDDNPRSEDPEKIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              V D     E P      A +   +        +   A           DV+V  G G
Sbjct: 411 EVFVLDVYGAREQPLAGVSGASVAEHVSVPVRYLPDFSAAAEQVAAAAAPGDVIVTMGAG 470


>gi|326201787|ref|ZP_08191658.1| FolC bifunctional protein [Clostridium papyrosolvens DSM 2782]
 gi|325988387|gb|EGD49212.1| FolC bifunctional protein [Clostridium papyrosolvens DSM 2782]
          Length = 424

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 16/138 (11%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGDRDQGKRP 400
            PGR E     +    + +D AH     + +   + +     + I + G   D+D     
Sbjct: 291 WPGRLEI---INENPLVMIDGAHNLEGGQALNSAMDKYFIQKKKIFIVGFLRDKDFKGIM 347

Query: 401 IMGKIALDLADIAI-VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            M       AD  I VT +N R+    ++   +       I+  +    +R A+ + +K+
Sbjct: 348 DM---LSSKADTIITVTPNNDRAVPSAELAEFLKIYSCTVIDGISIQNGLRIAVGLADKE 404

Query: 460 DVLVVAG--------KGH 469
            V+   G        +GH
Sbjct: 405 SVICAFGSLYMIGEIRGH 422


>gi|218698514|ref|YP_002406143.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI39]
 gi|218703351|ref|YP_002410870.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UMN026]
 gi|293403163|ref|ZP_06647260.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|293408182|ref|ZP_06652022.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298378693|ref|ZP_06988577.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300900878|ref|ZP_07119015.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|301026101|ref|ZP_07189576.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331661465|ref|ZP_08362389.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331671610|ref|ZP_08372408.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
 gi|226711865|sp|B7NHJ7|MURC_ECO7I RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711867|sp|B7N7W4|MURC_ECOLU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218368500|emb|CAR16235.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI39]
 gi|218430448|emb|CAR11314.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli UMN026]
 gi|291430078|gb|EFF03092.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|291472433|gb|EFF14915.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298281027|gb|EFI22528.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300355642|gb|EFJ71512.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|300395672|gb|EFJ79210.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331061380|gb|EGI33343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331071455|gb|EGI42812.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
          Length = 491

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|51891505|ref|YP_074196.1| folylpolyglutamate synthase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855194|dbj|BAD39352.1| folylpolyglutamate synthase [Symbiobacterium thermophilum IAM
           14863]
          Length = 437

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 10/179 (5%)

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E   +  +               A   + +       +         PGR E +  
Sbjct: 241 DLRGERGWYRRVRLSLLGRHQAANAAVALRILEVLGVDEGAIREGFAHVAWPGRMELLRA 300

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRD--QGKRPIMGKIALD 408
              G  + +D AH       +   +  +  GR + +V G   D+D  QG  P++      
Sbjct: 301 AG-GQLVLLDAAHNPAKCAALAGAVAELFPGRRVHLVVGMLADKDAAQGLAPLL-----P 354

Query: 409 LADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           LA+    T  ++PR+    ++           +   +  EA+  A+      D++V+ G
Sbjct: 355 LAERVWATTPESPRAMPAPELAQLCRELGHPALVAADLPEALEAALAAAAPGDLVVITG 413


>gi|329901110|ref|ZP_08272726.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549209|gb|EGF33797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 501

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 128/371 (34%), Gaps = 47/371 (12%)

Query: 101 FLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDN 160
             +L A R    +   ++A+TGT+GK++V S    +C+R+GLS    G            
Sbjct: 109 AQALAALREERGYAPKLIAITGTNGKTTVTSLTGLLCERAGLSVQVAGNI---------- 158

Query: 161 RLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
              +PS + + +     S        +E SS  L  H    ++    +  N+ +DH+D+H
Sbjct: 159 ---SPSALDVLRQC-LDSDSLPQAWVLELSSFQL--HTTHSLQADVATVLNITQDHLDWH 212

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                Y   K R+F     +    ++  DDA   ++                      L 
Sbjct: 213 GDMACYVADKARIFGTDTIR----VLNRDDAAVMQLASTGTAPVTFGSDEALSPDCFGLL 268

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFP------------------LPGEFQVYNALVAAGLC 322
               +        +   K      P                  + G+    NAL A  LC
Sbjct: 269 NENGMQWLAVAIEAEAEKKPTKRGPAEVRAVSSKRLMPADALKIRGQHNALNALAALALC 328

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
            AIG+  A +L  L   H  P R E V T +              +    L  +     G
Sbjct: 329 RAIGLPLAPLLHGLRDYHGEPHRVELVTTLAGVTYFDDSKGTNVGATVAALTGLGLQQQG 388

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF--I 440
           +++++ G  G + Q   P+   +A       ++       +D + IRA +   I     +
Sbjct: 389 KLVLIAGGDG-KGQDFTPLAAPVA-RHVRAVLLI-----GKDADAIRAALAGHIGQVELL 441

Query: 441 EKGNRIEAIRT 451
           +  +  +A+  
Sbjct: 442 DCASLEQAVER 452


>gi|313892570|ref|ZP_07826157.1| bifunctional protein FolC [Dialister microaerophilus UPII 345-E]
 gi|313118967|gb|EFR42172.1| bifunctional protein FolC [Dialister microaerophilus UPII 345-E]
          Length = 434

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 52/387 (13%), Positives = 118/387 (30%), Gaps = 46/387 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++ VTGT+GK SV + + +I + SG+ + +      I    +               + 
Sbjct: 40  KVIHVTGTNGKGSVVAMITKILELSGIKTGRFTSPHLIEYTERFYSCGAYISKEKFAEMY 99

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRD-------------------- 215
               + V  +  E      +   L  +  +     N+                       
Sbjct: 100 EKVQKAVQIMKEEGHEQPTEFEMLTAMAFLYFKEENVEYAVVEVGMGGLLDSTNVVEPEI 159

Query: 216 ------HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
                  +D+ +       +       ++ ++ P +  A +     + K A     ++  
Sbjct: 160 SVITNVAMDHMKILGKDIKSIAEQKAGIIKEKKPVVTSATNEALSIISKEAEKKHSKIYV 219

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
                    ++        +      E  D +    +P   +  +   A        +++
Sbjct: 220 YNKDFAVDSVEVKNKGQIIKLKADIKEISDKEQTIEIPLNGKYQSINAAVAWTTLKLLEN 279

Query: 330 ALVLEHLEKL------HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSG 382
                  E +       +  GRFE       G  I +D AH     + + + +     + 
Sbjct: 280 KEKRITNESILKGFLSVIWHGRFEI--FEIDGNTIILDGAHNFAGAKTLNETLNQKYKNK 337

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT---DDNPRSEDPEKIRAEIIHGIPGF 439
           + +V+F    D++  K   + K+ +   D            R+ D  K   +        
Sbjct: 338 KRLVIFSSLKDKETQK---ILKLIVRENDTVFFVEAPTKRTRTFDELKKMTD-----SKH 389

Query: 440 IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            E  N   A+  A+++  K +V++V G
Sbjct: 390 FEMPNVKTALDKALKISVKDNVIIVCG 416


>gi|270263957|ref|ZP_06192225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
 gi|270042150|gb|EFA15246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
          Length = 439

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  ++  + ++ +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPALSAAADAGVEIIGDVE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G                   + L         Q      +
Sbjct: 118 TVTTLVGEMAKAAGWAVGVGGNIGLP-------------ALSL-------LRQECQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+D +      + A      E           
Sbjct: 158 ELSSFQLET--TFSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAALCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V             VG          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADQRCISFGADVGDYH-------LNRQQGETWLRVRGEKILNTREMKLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+ I  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GRHNYTNALAALALADAVNIPRASSLKALTTFTGLAHRFQLAWEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G +     P+ G+          +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-KSADFSPL-GR---------YLQGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDVLVV 464
              ++    P      +   +A++     +   D++++
Sbjct: 373 DGEQLAELRPEVATLTDTMEQAMQAIAGRVQPGDMVLL 410


>gi|253689952|ref|YP_003019142.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259509777|sp|C6DEU2|MURC_PECCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251756530|gb|ACT14606.1| UDP-N-acetylmuramate/alanine ligase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 486

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 131/423 (30%), Gaps = 55/423 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSN--TPILVVDNTRKF--LSLFASRLYGKHPENILAVTGT 123
           A  +VVSSA +  +       +   P++     R+   L+      +G      +A+ GT
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVI-----RRAEMLAELMRFRHG------IAIAGT 127

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  + V  I   +GL    +     + +     RL +   +      S  S     
Sbjct: 128 HGKTTTTAMVTSIYAEAGLDPTFV-NGGLVKAAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
                             ++ +    TN+  DH+D +Q            F   LP    
Sbjct: 185 ------------------LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQ 226

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
           A++  DDA  +E++ R                 +   +         +    +       
Sbjct: 227 AVMCIDDAVIRELLPRVGRHITTYGFSDDADVRVSGYRQVGAQGHFTLERKDKP-LLTVT 285

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRG 355
              PG     NA  A  +    GID   +L  LE+      RF        E V   S  
Sbjct: 286 LNAPGRHNALNAAAAVAVATDEGIDDEAILRALERFQGTGRRFDFLGEYPLELVNGQSGT 345

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIA 413
             +  DY H    ++  +K  R     + +V+        R +        +     D+ 
Sbjct: 346 AMLVDDYGHHPTEVDATIKAARAGWPDKRLVMIFQPHRYTRTRDLYDDFAHVLSQ-VDVL 404

Query: 414 IVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++ D     E P        +   I   G    I   +         + L  +D+++V G
Sbjct: 405 LMLDVYSAGESPIPGADSRSLCRTIRGRGKIDPILVTDVDTLPELLSQALRGEDLILVQG 464

Query: 467 KGH 469
            G+
Sbjct: 465 AGN 467


>gi|255505887|ref|ZP_05348666.3| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bryantella formatexigens DSM 14469]
 gi|255265368|gb|EET58573.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bryantella formatexigens DSM 14469]
          Length = 463

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 103/379 (27%), Gaps = 30/379 (7%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP-------S 166
              ++ V GT+GK SV +F+  +    G  +        +    +      P        
Sbjct: 69  KMKVIHVAGTNGKGSVCAFLSSMLTAGGKKTGLFISPHLVKINERFQINNVPVTDGEFLE 128

Query: 167 PIY---------LAKALSYLSSQGVTHVSVEA--SSHGLDQHRLDGIKLIAGSFTNLGRD 215
                       LA   ++ +   +           H ++   L+         TN+   
Sbjct: 129 AYEKVFKVIREMLADGFAHPAYFEILFAVCLVLFERHEVEYAVLETGLGGRLDATNIVEH 188

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPA------IIYADDAYSKEVMKRAHNAGCRVLS 269
            +    T  +  + ++            A      +    D       +       +   
Sbjct: 189 PLACVITSISLDHTEILGDTIGQIAWEKAGIIKEGVPVIYDGCRSPEAEEVIRKRAQEQH 248

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
               G    + ++    +K                 +P          +  L     ID 
Sbjct: 249 APAIGLHADMYEILDKTDKSIDFKLNALYYEKRKITVPYPAPYQAENASLALLAMEKIDP 308

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV-VF 388
           +  +    +L  +          +    + VD AH  + +   ++ +  +  GR IV +F
Sbjct: 309 SHEISCDVRLQAMADTHWQGRMETVLPGVIVDGAHNEDGVRQFVRTLVGVQEGRRIVLLF 368

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIE--KGNRI 446
               +++  +          L++  I T    +   P +  A I             +  
Sbjct: 369 SAVVEKNYEQMIKTICDTGRLSE-VIATQIEGKRIVPAEELAGIFRKYTDAEVTAVPDIG 427

Query: 447 EAIRTAIEMLNKQDVLVVA 465
           +A  TA+    + D L+  
Sbjct: 428 KAFETAL--AKRGDGLLFC 444


>gi|212715556|ref|ZP_03323684.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660923|gb|EEB21498.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
          Length = 480

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 104/377 (27%), Gaps = 57/377 (15%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           P   + +TGT+GK+S      ++    GL++  +G                         
Sbjct: 103 PAQWIGITGTNGKTSTTEMTSEMLTACGLTAPAVGNIGKA-------------------V 143

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
                      + VE SS  L  H  D + L   + TN+  DH+D+H     Y  A    
Sbjct: 144 SHAAVDPANDVLCVELSSFQL--HFTDSLALDCAAITNIADDHLDWHGGIDNYA-ADKAK 200

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
               + K        +                +V     + +   +              
Sbjct: 201 VFHRVKKALVYNADDERVTRLAFAAETAEGCRKVGFTLSEPQDGQIGVKDGWIVDMSGIA 260

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI------------DSALVLEHLEKLHV 341
             +    + +  +     +          +                D    +  L++   
Sbjct: 261 GGKPGTPEQVAEVSEFTHLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLKRFTP 320

Query: 342 VPGRFEFV---GTNSRGGRIYVDY--AHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ 396
              R + V    T   G   +VD   A  +++ +  L +       + +V    G  +  
Sbjct: 321 GGHRIQTVATATTQDGGSIRFVDDSKATNAHAAKASLNSFAD----KSVVWIAGGLAKGS 376

Query: 397 GKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF-IEKGN-------RIEA 448
               ++ + A  +    I+       +D + I        P   +   +          A
Sbjct: 377 RFERLVAEQAHTIKAAVII------GKDQQPILDAFAASAPDIPLTIIDPANNDVIMERA 430

Query: 449 IRTAIEMLNKQDVLVVA 465
           +  A E     DV+++A
Sbjct: 431 VDAAGEYAQSGDVVLMA 447


>gi|154148410|ref|YP_001406306.1| hypothetical protein CHAB381_0726 [Campylobacter hominis ATCC
           BAA-381]
 gi|153804419|gb|ABS51426.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 330

 Score = 43.7 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M + +L    F E++   +I        +I+  +           F+A+   + D    I
Sbjct: 1   MDILNLNRLVFGEILGTPAIS-------RISGFTFTPHKNCKNLAFIALNATQND----I 49

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             A+  GA A++        +   T       + V++    +S   +          + +
Sbjct: 50  KTAVLNGAYAVIFDK-----NLDLTGDDEIAYIKVNDINLAISRLITYFIALKSIKFVKI 104


>gi|117622377|ref|YP_851290.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
 gi|166224687|sp|A1A7D6|MURC_ECOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115511501|gb|ABI99575.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
          Length = 491

 Score = 43.7 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKKLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|168230405|ref|ZP_02655463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469017|ref|ZP_03075001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197248149|ref|YP_002145112.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194455381|gb|EDX44220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211852|gb|ACH49249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205334952|gb|EDZ21716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 438

 Score = 43.7 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L  A   L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDADREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +      + A       +  K    ++ 
Sbjct: 158 ELSSFQLET--TSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAK---LRVYEKAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGVNMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +         
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSPLARYLTG-------DRIRLYCFGRDGAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 FAALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|120404494|ref|YP_954323.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
 gi|189029002|sp|A1TAW7|MURC_MYCVP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119957312|gb|ABM14317.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium vanbaalenii
           PYR-1]
          Length = 478

 Score = 43.7 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 62/277 (22%), Positives = 92/277 (33%), Gaps = 22/277 (7%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
             TN+  DH+D+  + +AY       F   +      ++  DD  ++ + +R   +G RV
Sbjct: 191 VVTNIEADHLDFFGSVEAYT-EVFDRFAGRIDPGGALVVCVDDPGARALAERLSGSGLRV 249

Query: 268 LSVGYQGKFIHL-----KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
           L  G  G                     + +  E +       +PG     NAL A    
Sbjct: 250 LRYGSTGTGALDATLLEWTQQGTGAVASIALRTEARPLTMRLSVPGRHMALNALGALLAA 309

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS- 381
              G D   VL+ L     V  RFE VG ++ G R++ DYAH    +   L  +R +   
Sbjct: 310 REAGADLESVLDGLAGFEGVRRRFELVG-SANGVRVFDDYAHHPTEVRATLTALRAVVDQ 368

Query: 382 ---GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP------EKIRAE 431
              GR IVVF      R        G      AD   V D     E P        +   
Sbjct: 369 AGSGRAIVVFQPHLYSRTVTFASEFGAALSA-ADEVFVLDVYAAREQPLAGVSGATVADA 427

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           +           +           +   DV+V  G G
Sbjct: 428 VSA---PVTYLPDFSAVAARVAASVAPGDVVVTMGAG 461


>gi|330813736|ref|YP_004357975.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486831|gb|AEA81236.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 467

 Score = 43.7 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 129/393 (32%), Gaps = 42/393 (10%)

Query: 66  QGAEAIVVSSAYSLQDFS--ATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           + A+ +++S+A + ++    A I+    I+   +    +            +  + ++G+
Sbjct: 67  KNAKIVIISTAINKKNIEFQAAIKKKILIIRRADMLAHIISL---------KKNIVISGS 117

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK+++ S V  I + +      +     I+S   + RL            S + +    
Sbjct: 118 HGKTTITSLVSTILKDANFKPTIV-NGGIINSLKTNARLGDGD-------WSVIEADESD 169

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
              ++ S                   +N+  +H+DY+++     N +  LF +  P    
Sbjct: 170 GSFLKFS-------------NTIAVVSNIDHEHMDYYKSFSNLTN-QFALFLDKTPLFGK 215

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFL 303
            ++  DD    +++K++            +  FI    V               K F   
Sbjct: 216 NVVCLDDPSIAKLIKKSTKQNFLTYGFSSKADFIPSNLVYKNMKIYFDLKVNLKKKFTIK 275

Query: 304 FPLPGEFQVYNAL---VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYV 360
                    +N L    A  + I +GI    +   LE    V  R   +    +   I+ 
Sbjct: 276 NVTLNLMGQHNVLNATAAIIVSITLGISVEKIKRTLENFLGVQRRLTKL-YEKKNRIIFD 334

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDD 418
           DYAH    +  +L   +     +  +V      R    + +  + +     +D+ ++   
Sbjct: 335 DYAHHPTEIAAVLNACKK-NFKKHKIVSVFQPHRFSRVQSLYSEFSNCFLDSDLVVLCPV 393

Query: 419 NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRT 451
               E  + I  ++       ++  N    I  
Sbjct: 394 YAAGE--KSINFDLEKFGKKIVKNSNTEVVIAK 424


>gi|331645201|ref|ZP_08346312.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
 gi|330909938|gb|EGH38448.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli AA86]
 gi|331045958|gb|EGI18077.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
          Length = 491

 Score = 43.7 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|260173859|ref|ZP_05760271.1| folylpolyglutamate synthase [Bacteroides sp. D2]
 gi|315922122|ref|ZP_07918362.1| folylpolyglutamate synthase [Bacteroides sp. D2]
 gi|313695997|gb|EFS32832.1| folylpolyglutamate synthase [Bacteroides sp. D2]
          Length = 496

 Score = 43.7 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 65/240 (27%), Gaps = 11/240 (4%)

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +   +    +I A D  S+E   +   A   +           +        K    
Sbjct: 244 PMMDNTIQSMHEMIEAMDEQSEEEANQMRQALLMLDLSDSLHTLDQILDKRKDAIKIHNE 303

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPGRFEFVG 350
           +      F  L        +   L A      +  +         L  +  + G      
Sbjct: 304 M-FPFGLFTELSGAYQFENMSTILKALATLTRLNYNIRSQDYRAGLANVCQLTGLMGRWQ 362

Query: 351 TNSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIA 406
                  I  D  H  + +E I      I       I  VFG   D+D +G    + K A
Sbjct: 363 KVHSYPDIICDTGHNVDGIEYIHVQLNAIHKTFGQEIHFVFGMVNDKDIRGVLRALPKYA 422

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 A V    P +E         + G           EA++ A +    +D++ V G
Sbjct: 423 TYYFTKASVKRALPENELLALAEEAGLKGTTYPTVV----EAVQAAKKNCPPKDLIFVGG 478


>gi|241896081|ref|ZP_04783377.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella paramesenteroides
           ATCC 33313]
 gi|241870681|gb|EER74432.1| UDP-N-acetylmuramate--L-alanine ligase [Weissella paramesenteroides
           ATCC 33313]
          Length = 449

 Score = 43.7 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 83/270 (30%), Gaps = 17/270 (6%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH DY+       +A       +         + DD     + K   + 
Sbjct: 171 PDYAIMTNIDFDHPDYYTGIDDVRSAFEDFGNNVKKG---IFAWGDDEQ---LRKIKVSV 224

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLC 322
                    +    +   +               +   +F  PL G+  V N L    + 
Sbjct: 225 PVYYYGTNPETDDFYATNIKRSTKGSSFDAYYHDEFLGNFKVPLFGQHGVLNTLAVVAVS 284

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITS 381
               I++ L+ E L     V  RF           I  DYAH  + +   +   R     
Sbjct: 285 YFEEIETQLIQEELLTFQGVKRRFTEKHIG--PVTIIDDYAHHPSEITATIDAARQKYPD 342

Query: 382 GRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDD-NPRSEDPEKI-RAEIIHGIPG 438
            ++  VF      R    +    K ALDLAD   +T+      E    I  A++   I  
Sbjct: 343 RKLTAVFQPHTFSRTIAYQDDFAK-ALDLADNVFLTEIFASARETAGAISSADLGKKISK 401

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
           F    +  E    A  + ++  V V  G G
Sbjct: 402 FEGIVSPTE---VAPLLADEDGVFVFMGAG 428


>gi|303250757|ref|ZP_07336952.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650362|gb|EFL80523.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 454

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A    +       +P     +  A 
Sbjct: 167 SAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQR-QFHHLVRTMPSSGCILSAAA 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D   +  +K    +  +              K  +             K  +  + + G 
Sbjct: 226 DENVQNTLKMGSYSELQF----IGEDKQWFAKPISADCSHFEVFHKGEKAGEVKWNIIGA 281

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G+  A   + L        R E  G    G  +Y D+AH   ++
Sbjct: 282 HNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKG-EVNGITVYDDFAHHPTAI 340

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDLAD--IAIVTDDNPRSE 423
              +  +R        ++       +  K   MG    +IA  L D     V   +    
Sbjct: 341 AATINALRGKVGKEQRILAVLEPRSNTMK---MGLHKEEIAPSLVDANAVFVYQPDTIPW 397

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               I   +           +  E ++  +E     D ++V
Sbjct: 398 AVSVITDNLTQPAKWS---ADLDELVKMIVEEAKPTDHILV 435


>gi|260187151|ref|ZP_05764625.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447780|ref|ZP_06437524.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289420738|gb|EFD17939.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
          Length = 494

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 89/425 (20%), Positives = 143/425 (33%), Gaps = 55/425 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRS---NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGT 123
           GA A+V + A   +     + +     P+++        ++ A  + G+     L VTGT
Sbjct: 73  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRP------AVLAKLMAGR---TTLMVTGT 123

Query: 124 SGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVT 183
            GK++  S +    Q  GL          +     +    +                   
Sbjct: 124 HGKTTTTSMLIVALQHCGLD-PSFAVGGELGEAGTNAHHGSGD---------------CF 167

Query: 184 HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESP 243
               + S   L Q+            TN+  DH+D++ + +AY  A    F E +     
Sbjct: 168 VAEADESDGSLLQY-----TPHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVSGGA 221

Query: 244 AIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTIS 294
            ++  DD     + +RA   G RVL  G          + +          H +    ++
Sbjct: 222 LVVCTDDPGGAALAQRATELGIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELA 281

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                      +PG     NAL A    + IG  +  VL+ L     V  RFE VGT   
Sbjct: 282 TAQGPRVMRLSVPGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGV 341

Query: 355 GG---RIYVDYAHTSNSLEMILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMGKIA 406
           G    R++ DYAH    +   L   R +      GR +VVF      R +      G+ A
Sbjct: 342 GKASVRVFDDYAHHPTEISATLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGR-A 400

Query: 407 LDLADIAIVTDDNPRSEDPEKIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLV 463
           L+ AD   V D     E P      A +   +        +     +      +  DV+V
Sbjct: 401 LNAADEVFVLDVYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIV 460

Query: 464 VAGKG 468
             G G
Sbjct: 461 TMGAG 465


>gi|225551700|ref|ZP_03772644.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
 gi|225371727|gb|EEH01153.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
          Length = 468

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 52/417 (12%), Positives = 119/417 (28%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY+  D    + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYNKDDLQVLLEAKELNIPILSYPEVLGELSRKHYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +   +  +     + +
Sbjct: 129 TAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  +A   A ++  + L       I  
Sbjct: 189 ----------------------TNVDYEHVDFFKNYEALEEAFLQYIDNLKKNGILIINS 226

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDF 302
            D+   K   +                    +  +         +               
Sbjct: 227 DDNNLLKIKRQINRKDISIFSYGSGDLSDFQISNIAVRSKYFCFSFLGFLNVELKTVLFH 286

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDY 362
                    +   L       +I      +    +    +  R E V   + G     DY
Sbjct: 287 NVLNFSAALLALNLFLESNGKSIFDFEEAIKRIAKNYSGIKRRVEVVKEEN-GVIYMDDY 345

Query: 363 AHTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD-- 418
           AH    ++  L  I+     + I++        R +       ++    ADI I+ +   
Sbjct: 346 AHHPREIKNTLFGIKNFYKNKRIILDFMPHTFTRTKEFFADFVEVLSA-ADILILHNIYL 404

Query: 419 ------NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                 NP  E   K+   I           +  ++I     +L   D+ +  G G+
Sbjct: 405 SNRENFNP-DELSVKLFLSIKKINKNTYFFKDVKDSINFIKSLLISGDLFITMGAGN 460


>gi|187478219|ref|YP_786243.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           FolC [Bordetella avium 197N]
 gi|115422805|emb|CAJ49333.1| FolC bifunctional protein [includes: folylpolyglutamate synthase
           and dihydrofolate synthase] [Bordetella avium 197N]
          Length = 434

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 17/135 (12%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPI 401
           PGRF+ +        I +D AH  ++  ++ +N+  +        VFG   D+D     +
Sbjct: 290 PGRFQILPGQPI---IILDVAHNPHAAAVLAQNLDNMGFHPYTHAVFGMLNDKDLPG--V 344

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEII---------HGIPGFIEKGNRIEAIRT 451
           + KI   + D         PR  D   +   +             P      +  +A   
Sbjct: 345 IAKIGSRI-DHWYCAGLPGPRGSDGASLAQRVERALPPSPAGADAPTVTGYDDSEQAFAA 403

Query: 452 AIEMLNKQDVLVVAG 466
           A E   + D +VV G
Sbjct: 404 AREKAGEGDRIVVFG 418


>gi|217979587|ref|YP_002363734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Methylocella
           silvestris BL2]
 gi|217504963|gb|ACK52372.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylocella
           silvestris BL2]
          Length = 461

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 115/358 (32%), Gaps = 45/358 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               ++A+TGT+GKS+  + +  +    G      G   T     +              
Sbjct: 112 PDAPLIAITGTNGKSTTTALIAHLFATLGFDVQIGGNIGTPILALEPPS----------- 160

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         VE SS+ +D      +    G   N+  DH+D H T + Y      
Sbjct: 161 --------SERVHVVECSSYQIDL--APSLDPTVGVLLNVTPDHLDRHGTMENY----AA 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH--NKQQ 290
           +   L+     A+I  DDA+   + K+    G  V+ V   G       V        + 
Sbjct: 207 IKARLVSAADHAVIGVDDAFCAAIAKKLRAEGHDVIGVSAAGMLEGDGVVFEGGALYWRG 266

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
                   D   +  L G     NA  +  +  AIG+D A + + L     +  R E VG
Sbjct: 267 GRRLDLIADLSGVGSLRGAHNGQNAAASVAVLHAIGLDGAGLAKGLRSFAGLAHRMEEVG 326

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
              +   +    A  +++ E  L +   I     I+         +  +P+ GKIA    
Sbjct: 327 KYGKALLVNDSKATNADAAEKALLSFDNIFW---ILGGRAKQGGIESLKPLFGKIAKGY- 382

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAI----RTAIEMLNKQDVLVV 464
              I        E        I    P          A+    R AIE    + V+++
Sbjct: 383 --LI-------GEASHDFAKTIGDAFP-VAFCQTLENALPLAARDAIESARAEPVVLL 430


>gi|148926539|ref|ZP_01810221.1| hypothetical protein Cj8486_0856c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845233|gb|EDK22327.1| hypothetical protein Cj8486_0856c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 240

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 19/120 (15%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++ +L       LI++ S+         +   + +   ++ G+ F        D    I
Sbjct: 1   MQISNLGELLNATLIHEGSVLS-------VEGFAINLNELKIGFAFF-----NNDKKE-I 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
            QA+ +GA  I+  +  +++D       +     V+N  + L  F            L  
Sbjct: 48  AQAVKKGAYTIITENDITIED------KDIFYFRVENLEQALVRFLRFFCEDKECEFLLF 101


>gi|311063984|ref|YP_003970709.1| bifunctional folylpolyglutamate synthase/sihydrofolate synthase
           [Bifidobacterium bifidum PRL2010]
 gi|310866303|gb|ADP35672.1| FolC Folylpolyglutamate synthase/Dihydrofolate synthase
           [Bifidobacterium bifidum PRL2010]
          Length = 546

 Score = 43.7 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 114/403 (28%), Gaps = 50/403 (12%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + +H   ++ VTGT+GK S A   + +C+  GL +             +           
Sbjct: 46  HPEHSFRVIHVTGTNGKGSTARMAEALCRAYGLRTGLYTSPHLERINERIAIDGQELSDD 105

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG----------RDHIDY 219
               +       V  V  + +  G        +      +                   +
Sbjct: 106 DFVDMWDQIKDLVAIVDAKMAESGRPPMSFFEVLTSMAIWKFADAPVDVAVVEVGMGGLW 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRAHNAGCRVLSV 270
             T     +A +    ++   +                       ++    +    +  +
Sbjct: 166 DATNVLDADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEERVMPIL 225

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +  H   V   +  +                 P        +   G   A    +A
Sbjct: 226 MEAAERNHATLVRDGYEMEVTDRVPAVGGQIATLHTPNGVYEQVPIAKFGEHQAHNALAA 285

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRG-------------GRIYVDYAHTSNSLEMILKNIR 377
           L           P   + VG   +G               I +D  H  N+ E + K I 
Sbjct: 286 LAAAEAVIPVNGPLNGDLVGQALQGVKVPGRIEQIRTSPTIILDGGHNVNAAEALRKAIE 345

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-----EDPEKIRAE 431
                 +++ V    GD+          +   +    +VT+++ R      E+ EKI  +
Sbjct: 346 ESYDFTQLVGVVAMMGDKQVE---EYLGVLEPILSQVVVTENSWRDRVMPAEELEKIAVQ 402

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
           +  G    I + +  +AI+ A++M++ +D         ++V G
Sbjct: 403 VF-GRDRVIREDSLPDAIQKAVDMVDVEDETGVGYGRGVLVCG 444


>gi|222445484|ref|ZP_03607999.1| hypothetical protein METSMIALI_01123 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435049|gb|EEE42214.1| hypothetical protein METSMIALI_01123 [Methanobrevibacter smithii
           DSM 2375]
          Length = 460

 Score = 43.7 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 71/189 (37%), Gaps = 10/189 (5%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                    +++TI     +F   F +   F   N++ A+ + +  G+    + + L + 
Sbjct: 248 CDFIGTAGDEKLTIKYSKGEFTTPFHMVSYFFE-NSVGASSVALTYGVSPEDITDALSEF 306

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +P   E VG    G ++ +D A   + +++ L+  +       +  F     RD+   
Sbjct: 307 KGLPAHMEDVG-EYNGRKVILDSAFLYDGMKITLEYFKDDNVVLFLDHFDTLSKRDKT-- 363

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKG----NRIEAIRTAIE 454
             +G++     D+ I +  N  ++  E   A E++  I           +  EA     +
Sbjct: 364 -EVGQLVGQYVDVIIASGFNEVNQTVEMDAAYEVLDAIENPSAIKVATRDITEAAALTFK 422

Query: 455 MLNKQDVLV 463
                D+++
Sbjct: 423 YSKPGDIIL 431


>gi|238024263|ref|YP_002908495.1| Folylpolyglutamate synthase [Burkholderia glumae BGR1]
 gi|237878928|gb|ACR31260.1| Folylpolyglutamate synthase [Burkholderia glumae BGR1]
          Length = 436

 Score = 43.7 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 118/407 (28%), Gaps = 49/407 (12%)

Query: 94  VVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS-- 151
            V   ++ L L       +    ++ V GT+GK S  + ++ I  ++G            
Sbjct: 28  RVTKVKEALGL-------EFACPVITVGGTNGKGSTCALLETILLKAGYRVGCHTSPHLL 80

Query: 152 -------------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH 192
                                    +  RL+   P+ L               + +  + 
Sbjct: 81  AFNERARIGGANVDDAALLPHFEAVEAARLSLAEPVTLTYFEFTTLVILRLFAASQLDAV 140

Query: 193 GLDQH---RLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            L+     RLD + ++      +    ID+ +               +     PA+    
Sbjct: 141 ILEVGLGGRLDAMNMLDADCAVVTSIDIDHTEYLGDTREQIGFEKAGIFRPGKPAVCGDP 200

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 +           L                  +            +  L      
Sbjct: 201 APPQTLIDHANAIGADLWLVGRDFRYETQPGNERQQWSYLGRDKRYPALAYPALRGANQL 260

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
                AL A     A    SA  +        +PGRF+ +        I +D AH  ++ 
Sbjct: 261 INASAALAALESLRARLPVSAQDIRLGLANVELPGRFQVLPGKPA---IVLDVAHNPHAS 317

Query: 370 EMILKNIRTI-TSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTD-DNPRSEDP 425
            ++ +N+  +        VFG   D+D     R + G+I     D   VTD   PR+   
Sbjct: 318 AVLAQNLGNMGFFPYTYAVFGAMRDKDIAGVLRQLKGEI-----DHWCVTDLPLPRAASA 372

Query: 426 EKIRAEII-HGIPG-----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E + A +   G+            +  EA R  ++  ++ D +VV G
Sbjct: 373 ETLEAALREAGVEDGPDSSVTRYASPAEAFRDTLKRASENDRIVVFG 419


>gi|121998580|ref|YP_001003367.1| FolC bifunctional protein [Halorhodospira halophila SL1]
 gi|121589985|gb|ABM62565.1| FolC bifunctional protein [Halorhodospira halophila SL1]
          Length = 434

 Score = 43.7 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 8/194 (4%)

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
           +    +       +       G     +        V  AL A           A  +  
Sbjct: 231 WTFSAEADGRWWWRCGEYHWGGLPASGIPGCAARGNVATALAALVQLPEAVGVDAAAVAR 290

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT-SGRIIVVFGCGGDR 394
           L     VPGR E     +      +D AH ++  E + + +   T +G+   +F     +
Sbjct: 291 LLDGVRVPGRLER--IEAGSLEWLLDVAHNADGAEELARVLDDRTVTGQTRALFAVAARK 348

Query: 395 DQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D   R ++  ++  + D   +   D P   + +++ +++       +  G+ +     A+
Sbjct: 349 DA--RALVAALSGRI-DAWYLPQLDEPDMRNADELASQLADAGESVVHCGDGVATTLAAL 405

Query: 454 E-MLNKQDVLVVAG 466
           +      D +VV G
Sbjct: 406 QGQAGPGDRVVVFG 419


>gi|224282660|ref|ZP_03645982.1| Folylpolyglutamate synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139818|ref|ZP_07802011.1| folylpolyglutamate synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132328|gb|EFR49945.1| folylpolyglutamate synthase [Bifidobacterium bifidum NCIMB 41171]
          Length = 546

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 53/403 (13%), Positives = 114/403 (28%), Gaps = 50/403 (12%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + +H   ++ VTGT+GK S A   + +C+  GL +             +           
Sbjct: 46  HPEHSFRVIHVTGTNGKGSTARMAEALCRAYGLRTGLYTSPHLERINERIAIDGQELSDD 105

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG----------RDHIDY 219
               +       V  V  + +  G        +      +                   +
Sbjct: 106 DFVDMWDQIKDLVAIVDAKMAESGRPPMSFFEVLTSMAIWKFADAPVDVAVVEVGMGGLW 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRAHNAGCRVLSV 270
             T     +A +    ++   +                       ++    +    +  +
Sbjct: 166 DATNVLDADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEERVMPIL 225

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +  H   +   +  +                 P        +   G   A    +A
Sbjct: 226 MEAAERNHATLIRDGYEMEVTDRVPAVGGQIATLHTPNGVYEQVPIAKFGEHQAHNALAA 285

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRG-------------GRIYVDYAHTSNSLEMILKNIR 377
           L           P   + VG   +G               I +D  H  N+ E + K I 
Sbjct: 286 LAAAEAVIPVNGPLNGDLVGQALQGVKVPGRIEQIRTSPTIILDGGHNVNAAEALRKAIE 345

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-----EDPEKIRAE 431
                 +++ V    GD+          +   +    +VT+++ R      E+ EKI  +
Sbjct: 346 ESYDFTQLVGVVAMMGDKQVE---EYLGVLEPILSQVVVTENSWRDRVMPAEELEKIAVQ 402

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
           +  G    I + +  +AI+ A++M++ +D         ++V G
Sbjct: 403 VF-GRDRVIREDSLPDAIQKAVDMVDVEDETGVGYGRGVLVCG 444


>gi|111115652|ref|YP_710270.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia afzelii PKo]
 gi|216263556|ref|ZP_03435551.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
 gi|123341262|sp|Q0SM34|MURC_BORAP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110890926|gb|ABH02094.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii PKo]
 gi|215980400|gb|EEC21221.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
          Length = 468

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 60/415 (14%), Positives = 129/415 (31%), Gaps = 44/415 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY      A + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYDKYGLPALLEAKELNIPILSYSEVLGELSRKYYS------VGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +F+  +  + GL+   I   S++  F  ++ +   S I++A+   Y         ++  
Sbjct: 129 TAFLGLLFNKLGLNPNVI-VGSSVKDFGDNSAIAGISNIFIAETCEYKKHFLHFSPNMLI 187

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
                               TN+  +H+D+ +  +A  +A ++    L       I   D
Sbjct: 188 -------------------LTNIDYEHVDFFENYEALEDAFLQYINNLKKNGILIINSDD 228

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD-----FDFLF 304
           +   K   +                    +  +   +     +                 
Sbjct: 229 NNLLKIKRQINRKDINIFSFGSKDLSNFQISNIVVKNEYFCFSFLGLCNVELRTVLFHNV 288

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
                  +   L       +I      V +  +    +  R E V    +G     DYAH
Sbjct: 289 LNFSAALLALNLFLESNGKSIFDFEEAVKKIAKNYSGIKRRVEVVK-EKKGVIYMDDYAH 347

Query: 365 TSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD---- 418
               +   L  I+     + I++        R +       ++   +ADI I+ +     
Sbjct: 348 HPREIRDTLLGIKDFYKNKRIILDFMPHTFTRTKEFFNDFVEVLS-VADILILHNIYLSN 406

Query: 419 ----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
               NP  E   K+   I           +  +++     +L   D+ +  G G+
Sbjct: 407 RENFNP-DELSVKLFLNIKKINKNTYFFKDVKDSVEFIKSLLISGDLFITMGAGN 460


>gi|319760284|ref|YP_004124222.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Blochmannia vafer str. BVAF]
 gi|318038998|gb|ADV33548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Blochmannia vafer str. BVAF]
          Length = 446

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 114/398 (28%), Gaps = 48/398 (12%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS    L D          I ++ +   F+              I+A+TG++GKS
Sbjct: 68  ADLIVVSPGVRLDDPVLIEARRMGIEIIGDIELFVREI--------TVPIIAITGSNGKS 119

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V   V  + + +G     +G                   + L        +       +
Sbjct: 120 TVTQLVGNMARYAGWKVGIVGNIGIP-------------ALTL-------LNNNYQLYIL 159

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  LD      +   A +  N+  DH+D +      +++                  
Sbjct: 160 EISSFQLDV--TYSLCAAAATILNVSEDHMDRYAAGIVDYSSSKNRIYNNAITCVI---N 214

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
             D  +  V           +        I   K  A        I    +         
Sbjct: 215 FLDPLTYPVSCNYGRLVSFGVDSNSADYRIEYCKGKAWIVIYGEYILDCFELHINCH--- 271

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
                 N L A  L  ++ I     L+ L     +  RF+ + TN     I    A    
Sbjct: 272 -INYYANILSALALSDSVNIPRMASLQSLRYFSGLSHRFQLIYTNRNVKWINDSKATNVA 330

Query: 368 SLE-MILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
           + +  I   +  + SG + ++ G  GD        +  +             +       
Sbjct: 331 ATKIAINAALSILASGDLHLLLG--GDGKLANFFELTALITKYEIHLYCFGKDGFFLT-- 386

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                   G        + I+A+      + ++D++++
Sbjct: 387 ------KSGSKNIFLTNDIIDAMNIICRRVRRKDIVLL 418


>gi|259417296|ref|ZP_05741215.1| FolC bifunctional protein [Silicibacter sp. TrichCH4B]
 gi|259346202|gb|EEW58016.1| FolC bifunctional protein [Silicibacter sp. TrichCH4B]
          Length = 423

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 48/408 (11%), Positives = 109/408 (26%), Gaps = 38/408 (9%)

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +      L +D   + L+   +      P  ++ + GT+GK S  + ++   +  G S 
Sbjct: 15  ALHPKIIDLTLDRVWRLLAALDNPQDKLPP--VIHIAGTNGKGSTQAMIRAGLEGWGKSV 72

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIY-------LAKALSYLSSQGVTHVSVEASSHGLDQH 197
                TS   +   +  L     I        L +  S    + +T+  +   +  L   
Sbjct: 73  HAY--TSPHLARFHERILLAGDLITEDHLTQVLDECYSANGGESITYFEITTVAGLLAFS 130

Query: 198 RLDGIKLIAGSFTNLGRDHIDYHQ------TQQAYFNAKMRLFEELLPKESPAIIYADDA 251
           R      +         D  +         T  +  + +             A I     
Sbjct: 131 RRSADYTLLEVGLGGRLDATNVITPEVSVITPISIDHEQFLGNTLAKIAGEKAGIIKRGV 190

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
                 +          +    G  +         ++++  +  + +      PLP    
Sbjct: 191 PVVVGPQPDEAMEVIEDTAMRLGAPVIAYGQHWHVHEERGRLVYQDERGLLDLPLPNLMG 250

Query: 312 VYN--ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-----YVDYAH 364
            +      AA   +          E        P R + + T            ++D  H
Sbjct: 251 AHQIQNAGAALAVLRHLGADEAACEAAVVGAQWPARMQRLKTGPLVEIAGAAELWLDGGH 310

Query: 365 TSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRS 422
            + +   +   +  +      ++ G    +D     RP+  + A        +T  +   
Sbjct: 311 NAAAGIALADVLAKLPKRPTHLICGMLNTKDVTGYLRPLAAEAAS-------LTAVSIPG 363

Query: 423 EDPEKIRAEIIHGIPGF----IEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           E       E                N  EA++  +   +    +++ G
Sbjct: 364 EAATLSAEETEAAAKSVDLQAYTAENVTEALKAILAR-DPNSRVLICG 410


>gi|148643251|ref|YP_001273764.1| peptide ligase [Methanobrevibacter smithii ATCC 35061]
 gi|148552268|gb|ABQ87396.1| cell wall biosynthesis protein, MurD-like peptide ligase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 460

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 71/189 (37%), Gaps = 10/189 (5%)

Query: 280 KKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL 339
                    +++T+     +F   F +   F   N++ A+ + +  G+    + + L + 
Sbjct: 248 CDFIGTAGDEKLTLKYSKGEFTTPFHMVSYFFE-NSVGASSVALTYGVSPEDITDALSEF 306

Query: 340 HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
             +P   E VG    G ++ +D A   + +++ L+  +       +  F     RD+   
Sbjct: 307 KGLPAHMEDVG-EYNGRKVILDSAFLYDGMKITLEYFKDDNVVLFLDHFDTLSKRDKT-- 363

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHGIPGFIEKG----NRIEAIRTAIE 454
             +G++     D+ I +  N  ++  E   A E++  I           +  EA     +
Sbjct: 364 -EVGQLVGQYVDVIIASGFNEVNQTVEMDAAYEVLDAIENPSAIKVATRDITEAAALTFK 422

Query: 455 MLNKQDVLV 463
                D+++
Sbjct: 423 YSKPGDIIL 431


>gi|313905015|ref|ZP_07838385.1| FolC bifunctional protein [Eubacterium cellulosolvens 6]
 gi|313470085|gb|EFR65417.1| FolC bifunctional protein [Eubacterium cellulosolvens 6]
          Length = 447

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 58/399 (14%), Positives = 111/399 (27%), Gaps = 49/399 (12%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS- 154
           D+TR+ L L     + +    I+ V GT+GK SV +++  +  + G  +        IS 
Sbjct: 35  DHTRRLLDLLG---HPEEEMKIIHVAGTNGKGSVCAYLNAMFLQGGFRTGMFTSPHLISI 91

Query: 155 ---------------------------SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
                                          D     P+   L   +  L         +
Sbjct: 92  RERFLISGKEVSEELFVRAFEKAMKAVRKVMDEGDVHPAYFELLFLMGLLIFSEEKVDVL 151

Query: 188 EASSHGLDQHRLDGIKLIA--GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
              +       +  +         T++  DH  Y                 ++    P I
Sbjct: 152 ILETGMGGTKDVTNVVEHPLACVITSISPDHEQYLG---HTIPEIAAHKAGIIKAGVPVI 208

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
               D  S  V+++        L V    +    +      +          +       
Sbjct: 209 CDGHDPCSLAVIQKRAEELNSPLLVLDSDRIRISEITKDGISFSLKVEREPVRLQIRQTA 268

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHT 365
           +        A  A      +   S   L         P R E V  +     + +D AH 
Sbjct: 269 VCQAMNASLAYCAMLATEEMHHLSRETLASGIAQMKWPCRMETVLPD-----VIIDGAHN 323

Query: 366 SNSLEMILKNIRTITSGRIIVV-FGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRS 422
            + +   ++ +      + I + FG   D+   K P + +   +    D  +VT  +   
Sbjct: 324 VDGIAEFIRTVEHFHRDQEITILFGSVADK---KYPEIIRQLSEGIRPDRVVVTKISGAR 380

Query: 423 EDPEKIRAEI--IHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
           E  E+  AE+   +G+       +   A   A  +    
Sbjct: 381 EVSEETFAELFRANGVKDVYGAPDPGAAFELARRVQGSG 419


>gi|294084826|ref|YP_003551586.1| FolC bifunctional protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664401|gb|ADE39502.1| FolC bifunctional protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 455

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 57/423 (13%), Positives = 120/423 (28%), Gaps = 39/423 (9%)

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQ 134
            A    D  A +      L +D T   L+   +  +   P   + V+GT+GK SV + ++
Sbjct: 24  RAQHALDRLAALHPKLIDLGLDRTFALLNRLGNPHHALPP--TIHVSGTNGKGSVIAHMR 81

Query: 135 QICQRSGLSSFQIGPTSTISSFAQDNRLTTP----------SPIYLAKALSYLSSQGVT- 183
            + +  GL               +     T             +        ++   VT 
Sbjct: 82  AMAEGCGLRVHVYSSPHLCRFNERIRLAGTLISDGALADLLEEVENINGTDEVTFFEVTT 141

Query: 184 -HVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +  S    D   L+         TN+    +    T  A  +      +       
Sbjct: 142 AAAMLAFSQCEADLLLLETGLGGTLDSTNVLDRPLATIITPIARDHEHFLGNDVATIASQ 201

Query: 243 PAIIYADDAYSK----------EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
            A I   +              ++   A   G ++ +                       
Sbjct: 202 KAGIMRHNVPCFSAQQDNVVAQQLNAHAEEIGAKLFTASIDFNGYKAADGRIAITYSNTD 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA---LVLEHLEKLHVVPGRFEFV 349
           ++                    +L A  L  A+G       + +       + PGR + +
Sbjct: 262 LNDGAVTLPTPGLAGEHQVDNASLAATALIHALGTSRKLAPVKIVAGLGNAIWPGRIQKL 321

Query: 350 GTN-----SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ-GKRPIMG 403
                        I++D AH ++  + ++  +  +  G+  V+ G    RD       + 
Sbjct: 322 DKGDLTTLMPDQSIWLDGAHNAHGAQALVAALPDLHDGQWTVICGALNTRDPAEFLAPIS 381

Query: 404 KIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           KIA       ++T   P  +       E+           +   +I+ A+ + +    ++
Sbjct: 382 KIAGQ-----VLTLTIP-GQPASLTAGELAASATSIGLSASPARSIQDALTIADNNHPVI 435

Query: 464 VAG 466
           + G
Sbjct: 436 ICG 438


>gi|282851635|ref|ZP_06261000.1| bifunctional protein FolC [Lactobacillus gasseri 224-1]
 gi|282557603|gb|EFB63200.1| bifunctional protein FolC [Lactobacillus gasseri 224-1]
          Length = 262

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTD 417
            VD AH   ++  +L  IR    G+I ++ G   D+D      +G +     D    +T 
Sbjct: 145 IVDGAHNFQAMTNLLHLIRKENQGQIYILLGMMKDKD------LGLVTNLFKDEKVTLTR 198

Query: 418 -DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D PR+   E   AE       +  + N   A       L   D+L+V G
Sbjct: 199 IDYPRAARLEDFPAEAQK---KYNYEENFKIAYTNLKNKLKPHDILLVTG 245


>gi|307154774|ref|YP_003890158.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7822]
 gi|306985002|gb|ADN16883.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7822]
          Length = 451

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 108/355 (30%), Gaps = 35/355 (9%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                      P   + VTGT+GK++  + V  I Q +G  +   G     +      + 
Sbjct: 94  GELELAWRSLKPSQWVGVTGTNGKTTTTALVTAIFQAAGFHAPACGNIGYAACELVLKQD 153

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
             P                   +  E SS+ ++      +    G +T    DH++ H+T
Sbjct: 154 QKP----------------YDWIIAEISSYQIESS--LDLSPKIGIWTTFTPDHLERHKT 195

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
              Y+N K  L    L +    I   DD Y   +              G +       K 
Sbjct: 196 LSNYYNIKAAL----LHRCRRQIFNGDDPYLHNMGLTQWQDAYWTTVKGKEALLCDPSKG 251

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
             + +   V         +  F + GE    N L+A       G+D   + E +     V
Sbjct: 252 VYLQDNWVVAFGELIAPINL-FKMVGEHNQQNLLMAVAAARLAGVDKQAITETMATFSGV 310

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           P R E + T +    I    A   ++  + L ++          +   GG   +G     
Sbjct: 311 PHRLELIRTRAGVAYINDSKATNYDAAVVGLSSVE------TPAILIAGGQAKKGDDTEW 364

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEI-IHGIPGFIEKGNRIEAIRTAIEML 456
            K+    A   ++       E        +   G   +       +A++   ++ 
Sbjct: 365 IKLIKAKAAAVLLI-----GEAASTFAQRLHDSGYDSYEIVETMDKAVQRGADLA 414


>gi|92111280|gb|ABE73464.1| putative UDP-N-acetylmuramoylalanyl-D glutamate ligase [Bacillus
           fastidiosus]
          Length = 236

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 13/159 (8%)

Query: 307 PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTS 366
           PG+  + N L A       G+++  +   L     V  R +FVG            A   
Sbjct: 62  PGKHNLENILAAIAAVKIYGVNNTAIRHVLTTFSGVKHRLQFVGEVEGRKFYNDSKATNI 121

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDP 425
            +    L+        +  ++   G DR      +  K +L      I   +  P+ E  
Sbjct: 122 LATTKALQAFT-----KPTILLAGGLDRGNEFDEL--KPSLKNVKTLITFGETAPKLE-- 172

Query: 426 EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            +I  E   GI       N  +A+  A +  N++DV+++
Sbjct: 173 -RIAKE--SGIEVIKRVDNVEQAVYAAFDASNEEDVILL 208


>gi|229820895|ref|YP_002882421.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
 gi|229566808|gb|ACQ80659.1| UDP-N-acetylmuramate/alanine ligase [Beutenbergia cavernae DSM
           12333]
          Length = 473

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 90/438 (20%), Positives = 154/438 (35%), Gaps = 58/438 (13%)

Query: 56  GHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPE 115
           GH     A+  GA+ +VVSSA    +          +  V +    L+  A+        
Sbjct: 52  GHR--AAAVE-GADVVVVSSAIRGDNPELVRARELGV-EVLHRSAALARIANERE----- 102

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            ++AV GT GK++ ++ +      +GL      PT+ I +  +D                
Sbjct: 103 -LVAVAGTHGKTTTSAMLAVALTEAGLD-----PTAAIGAVVRDWSSGA----------R 146

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             + +     + E+ S  L               TN+  DH+D++    A   A  R F 
Sbjct: 147 VGAGRVFVAEADESDSSFLAY------APRVAVVTNIEADHLDHYADTDALVEA-FREFA 199

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-------KFIHLKKVCAIHNK 288
             +      +  ADD  S E+ + A   G RV + G  G         + +  +      
Sbjct: 200 RRIVSGGLLVACADDPGSLELARWATAQGIRVRTYGVGGEPLDPASDHVRITDLELDATS 259

Query: 289 QQVTISVEGKDFDFLFPL------PGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            +  +++   D     P+      PG   V +A+      + +G D+  +   L +    
Sbjct: 260 ARAEVTLVTADGLGPGPVRLRLAAPGRHTVLDAVAGWAAGLELGADAEQLAHGLARFTGT 319

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
             RFE  G  + G R+  DYAH    +   L+  R  +  GR++V+F             
Sbjct: 320 ARRFETRG-EAGGVRVVDDYAHNPTKVRAALEAARLAVGDGRVLVLFQPHLYSRTAAFAT 378

Query: 402 MGKIALDLADIAIVTDDNPRSEDPE-----KIRAEI------IHGIPGFIEKGNRIEAIR 450
               ALD AD+ +VT      EDP       +  +         G   F    +R+ A  
Sbjct: 379 AFADALDAADVVVVTGIYGAREDPAPGVTSALVTQAEPPGRAARGAAPFALVPDRLAAAH 438

Query: 451 TAIEMLNKQDVLVVAGKG 468
                    D+++  G G
Sbjct: 439 EIAGRARPGDLVLTVGAG 456


>gi|306831515|ref|ZP_07464673.1| tetrahydrofolate synthase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426300|gb|EFM29414.1| tetrahydrofolate synthase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 417

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 93/304 (30%), Gaps = 23/304 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +     V    +EA   GL     +  K +A    ++G DH +    
Sbjct: 119 TEFEVITVLMFEYFGHMHPVDIAFIEAGMGGL-YDSTNVFKALAVICPSIGLDHQNVLGQ 177

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A    +     +       A     D   +  +K+A   G +                
Sbjct: 178 TYAEIAEQKAGVLKEHVPFIFAT--ERDNVRQVFLKKAQACGSQTYEFKKD----FSVNE 231

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                  Q   ++E      L              A  L       +  ++++       
Sbjct: 232 TENGFDYQGQENLEDIRLAMLGKHQISNASLAITAALLLSKTYPKVTKEIIKYGLAQTHW 291

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E +  N     + +D AH + S++ ++  ++      + ++F     +       M
Sbjct: 292 VGRTELMFPN-----VMIDGAHNNESVQALVNVMQAYKDKNLHILFAAIDTKPID---SM 343

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   LAD+ + T +   S         + +    + +  +  + ++  I+  +K D  
Sbjct: 344 LALLSQLADVDVTTFEYHNSL-------ALENYPEQYHKVPDWKDWVKQ-IDSDSKDDFY 395

Query: 463 VVAG 466
           ++ G
Sbjct: 396 LITG 399


>gi|156329431|ref|XP_001619021.1| hypothetical protein NEMVEDRAFT_v1g224595 [Nematostella vectensis]
 gi|156201317|gb|EDO26921.1| predicted protein [Nematostella vectensis]
          Length = 252

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/271 (8%), Positives = 47/271 (17%), Gaps = 27/271 (9%)

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           + G  SV S   +   +   S  Q+               TT  P   A   +       
Sbjct: 3   SVGNGSVKSATGKTQHQWTPSQPQVKTGGPNWQKQNLMASTTLPPSQPAWGGAAPVPGAQ 62

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
               +     G+                                + + + +  +      
Sbjct: 63  PVPPMAQPMGGM-------------YRPGFTPVSQPMVCVPLPRYWSLLPVSNQWYMYHY 109

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
               + +  +++  +      G           + +L          Q  +        F
Sbjct: 110 LGTGHFEQCHNQWYVYHYLGTGHFEQCHNQWYMYHYLGNGHFYQCHNQWYVYHYLGTGHF 169

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV-VPGRFEFVGTNSRGGRIYVD 361
                  +  +                          H    G FE              
Sbjct: 170 YQCHNQWYVYH---------YLGTGHFEQCHNQWYMYHYLGTGHFEQCHNQWYVYHYLST 220

Query: 362 Y----AHTSNSLEMILKNIRTITSGRIIVVF 388
                 H    +   L             V+
Sbjct: 221 GHFYQCHNQWYVYHYLGTGHFYQCHNQWYVY 251


>gi|282899451|ref|ZP_06307418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195715|gb|EFA70645.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 466

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 126/382 (32%), Gaps = 37/382 (9%)

Query: 82  FSATIRSNTPILV--VDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQR 139
            S  +  + P+LV   +   + +               + +TGT+GK++  +    I Q 
Sbjct: 71  VSPGVPWDIPLLVKAREMGIETMGEMELAWRQLQNIPWVGITGTNGKTTTTALTAAIFQA 130

Query: 140 SGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
           +G  +   G      +           P                 V  E SS+ ++    
Sbjct: 131 AGFHAPACGNIGYAVAEVALQVALGAKPPD--------------WVIGELSSYQIESS-- 174

Query: 200 DGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKR 259
             +    G +T    DH+  H+T + Y++ K +     L + S   I   D      +  
Sbjct: 175 WSLSPHIGIWTTFTPDHLARHKTLEDYYDIKAK-----LLRNSRLQIINGDDAYLSKVGL 229

Query: 260 AHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF----LFPLPGEFQVYNA 315
            H       SV   G  I  K     +      +S + +           + GE    N 
Sbjct: 230 QHWPHAYWTSVKGLGHLIGGKGFYIENGWVTEKLSADSEPQPIVAVTDLKMVGEHNQQNL 289

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L++ G     GI+ A +   +++   VP R + V T      I    A   ++ E+ LK+
Sbjct: 290 LMSVGAARLAGIEIAAINHGVQQFPGVPHRLQHVCTWEGIQFINDSKATNYDAAEVGLKS 349

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435
           +++       ++   G  +       + +I    A + ++      +E   K    +  G
Sbjct: 350 VKS-----PTILIAGGEAKAGDDTGWLKRIQEKTAAVLLIGS---AAETFSKRLETV--G 399

Query: 436 IPGFIEKGNRIEAIRTAIEMLN 457
              F       +AI  A ++  
Sbjct: 400 YGNFEIVETMEKAIPRAAQLAK 421


>gi|255693920|ref|ZP_05417595.1| tetrahydrofolate synthase [Bacteroides finegoldii DSM 17565]
 gi|260620285|gb|EEX43156.1| tetrahydrofolate synthase [Bacteroides finegoldii DSM 17565]
          Length = 496

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 8/148 (5%)

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILK---NIRTI 379
           +   I      E    +  + G             I  D  H  + ++ I K    IR  
Sbjct: 335 MGYHISPKNYFEGFSNVCELTGLMGRWQKVYSYPDIICDTGHNVDGIKYICKQLEAIRAN 394

Query: 380 TSGRIIVVFGCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
              +I +VFG   D+D      I+ K A      A V    P +E  E  +   + G   
Sbjct: 395 DGKKIHIVFGMVNDKDISGVLKILPKDATYYFTKASVKRALPENELQELAQKAGLKGNAY 454

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                   EA++ A +    +D + V G
Sbjct: 455 PTVV----EAVQAAKKDCPPKDFIFVGG 478


>gi|254430681|ref|ZP_05044384.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
 gi|197625134|gb|EDY37693.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
          Length = 478

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 130/426 (30%), Gaps = 68/426 (15%)

Query: 68  AEAIVVSSAYSL--QDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           A  +V+SSA      +     R    I    +    L            +  +AV G+ G
Sbjct: 75  APLVVISSAVPETNPELKEARRVGLKICHRSDVLAAL---------IQNQASIAVAGSHG 125

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++ +S +  +   +G                       P+ +      ++ S+      
Sbjct: 126 KTTTSSLIATLLAATGHD---------------------PTAVIGGIVPAFGSNGRSGKG 164

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
            +  +        L   K   G  TN+  DH D++   +A      R             
Sbjct: 165 RLLVAEADESDGSLVKFKPGLGVLTNVELDHTDHYPDLEALIGTLRRFAGR--------S 216

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLF- 304
                 +   +++   +A         +G       +    +        +G+    +  
Sbjct: 217 GRLLANHDCAILREHFDAQHWWSITTTEGIDFAAVALEERGDGTTAEFYEQGQPVGRICL 276

Query: 305 PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAH 364
           PLPG   + NA+ A   C   G+  A +   +  L     RF+F G    G  +  DYAH
Sbjct: 277 PLPGRHNLSNAVAALAACRLEGVAFAELQRAVAGLKPPGRRFDFRG-IWNGRLVVDDYAH 335

Query: 365 TSNSLEMILKNIRTI----------TSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIA 413
             + +   L   + +             R++ VF      R     P   + AL  A   
Sbjct: 336 HPSEVAATLGMAQLMVGSGRSPLPQVPRRLVAVFQPHRYSRTAQFLPGFAE-ALRNAHTV 394

Query: 414 IVTDDNPRSEDP------EKIRAEIIHGIP--GFIEKGNRIEAIRTAIEMLN---KQDVL 462
           ++       E P      + +   I    P    +   +  E    A+++     + D++
Sbjct: 395 LIAPLYAAGEAPIDGVSSQALAEAIRALDPTLPVMVASSLDE---LAVQVAGCSVEGDLV 451

Query: 463 VVAGKG 468
           +  G G
Sbjct: 452 LAMGAG 457


>gi|148284827|ref|YP_001248917.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Orientia
           tsutsugamushi str. Boryong]
 gi|146740266|emb|CAM80615.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 472

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 104/369 (28%), Gaps = 61/369 (16%)

Query: 109 LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPI 168
                    + +TGT+GKS+ ++ +  I   +       G         +DN        
Sbjct: 107 YNEYPNRKYIGITGTNGKSTTSTLIHHILTFTNGKFDIGGNIGKAVLSLRDNVEG----- 161

Query: 169 YLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFN 228
                             +E SS  LD   +  +KL      N+  DHID + +   Y  
Sbjct: 162 ----------------YVLELSSFQLDL--ITDLKLDVAVLLNITADHIDRYYSFDQYIL 203

Query: 229 AKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNK 288
           +K ++           I       S       + +  R  +   +     +       + 
Sbjct: 204 SKQKILSLATKNGYALINKECSIISNANYNTLYASKFRNTTCSLELIKKAINTDELNKSI 263

Query: 289 QQVTISVE------------GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336
              +I+ +             +  +F   L G+    N   A   C  +G +   +   +
Sbjct: 264 ADESINCQSQPTLVKFSSHIPQHINFTSLLLGKHNNQNIAAAFYACKILGRNEYDITSAI 323

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG 391
            +   +P R +++G  +         A  +++    L ++  I        +   V    
Sbjct: 324 NQFQPLPHRMQYIGKKNNIHIYNDSKATNADAASKALLSLSNIYWIAGGVAKEGGVNSIV 383

Query: 392 GD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
               +  K  + G+     A                   AE + G+  F       EA  
Sbjct: 384 NTLYEVKKAYLYGQ--SRYA------------------LAETLKGVVAFSINNTMEEAFN 423

Query: 451 TAIEMLNKQ 459
            AI      
Sbjct: 424 QAIIDAESD 432


>gi|116333684|ref|YP_795211.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis ATCC
           367]
 gi|122269629|sp|Q03RJ2|MURC_LACBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116099031|gb|ABJ64180.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus brevis ATCC
           367]
          Length = 443

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 67/219 (30%), Gaps = 11/219 (5%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
             K      TN+  DH DY+      ++A   L +++         + DD     + K  
Sbjct: 163 ATKPDYAIMTNIDFDHPDYYTGIDDVYSAFETLAKQVKKG---IFAWGDDPE---LRKLK 216

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +          +  F       +           +    +F   L GE  V N+L    
Sbjct: 217 TDVPVYYYGTSDRDDFQARNIKRSTTGSTFDVYHDDEFLGNFEIHLFGEHNVLNSLAVIA 276

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     ++   +   L     V  RF           I  DYAH  + ++  L   R   
Sbjct: 277 VAYFEKVNMDEIKHELADFKGVKRRFTERKLA--DMTIIDDYAHHPSEIKATLDAARQKY 334

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD 417
             + I+         +    +M   A   +LAD   +T+
Sbjct: 335 PDKEIIAVFQPHTFSRTI-ALMDDFAKSLNLADKVFLTN 372


>gi|94986576|ref|YP_594509.1| folylpolyglutamate synthase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730825|emb|CAJ54187.1| Folylpolyglutamate synthase [Lawsonia intracellularis PHE/MN1-00]
          Length = 435

 Score = 43.7 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 98/324 (30%), Gaps = 18/324 (5%)

Query: 103 SLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRL 162
                  +   P  ++ + GT+GK S A+F+  + +  GL          ++   +    
Sbjct: 30  QALTKLDFNSLPYKVVQIVGTNGKGSTATFLASLAKSHGLKVGIYTSPHFVTPRERICIN 89

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVE----------ASSHGLDQHRLDGIKLIAGSFTNL 212
                  +   L+         ++             S   +D   L+         T  
Sbjct: 90  GEMLSPEVWITLTERILDNTLSLTYFELLTVLAIVAFSEFKVDLAILEAGLGGQHDATTA 149

Query: 213 GRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGY 272
               +  +          +    E + KE    +           +    +    ++   
Sbjct: 150 VPADLVCYTPIDLDHEQFLGSTVEAIAKEKSQAMRFRKPVLSSFQQPEVMSILCAMAKEK 209

Query: 273 QGKFIHLKKVCAIHNKQQVTIS-VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSAL 331
              F  L+++  +++     +   + K       + G+ Q  NA +A      +  +   
Sbjct: 210 NCSFQSLEQISLVYDLFYPNLDGSQTKSEYLTLGMAGKHQRVNAQLALAAWHVLSQNFGW 269

Query: 332 VLEHLEKLH-----VVPGRFEFVGTNSR--GGRIYVDYAHTSNSLEMILKNIRTITSGRI 384
                          +PGRF++V  N         +D AH  + LE  +   ++I     
Sbjct: 270 DFNLNCIYKGLAHAFIPGRFQYVPPNPSLGCLPTILDGAHNPHGLEACIAACKSIGIRPG 329

Query: 385 IVVFGCGGDRDQGKRPIMGKIALD 408
            ++F C  D++  +   + +I  +
Sbjct: 330 AIIFSCFADKNIKEMVELVQIFAE 353


>gi|256832203|ref|YP_003160930.1| FolC bifunctional protein [Jonesia denitrificans DSM 20603]
 gi|256685734|gb|ACV08627.1| FolC bifunctional protein [Jonesia denitrificans DSM 20603]
          Length = 463

 Score = 43.7 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V ++     I +D AH    +E + + +       R++ V  C  D+D     +
Sbjct: 316 PGRLEVVRSS---PTIVLDAAHNPGGIEALTQALDESFDFTRLVGVVSCLADKDAE--TL 370

Query: 402 MGKIALDLADIAIVTDDNPRS---EDPEKIRAEIIHGIPGFIEKG 443
              +   LA++ + + D+PR+   ED   I  +I  G      + 
Sbjct: 371 FALLEPHLAEVVVTSIDSPRAADIEDLADIARDIF-GEDRVAVEP 414


>gi|153855132|ref|ZP_01996316.1| hypothetical protein DORLON_02329 [Dorea longicatena DSM 13814]
 gi|149752301|gb|EDM62232.1| hypothetical protein DORLON_02329 [Dorea longicatena DSM 13814]
          Length = 431

 Score = 43.7 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 21/187 (11%)

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS-----ALVLEHLEKLHVVPGRFE 347
           ++   K +  +            L  A   I              +          GRF 
Sbjct: 225 LTFSYKKYAHMQNHIAGECQRENLSVALEVIESLRKLGYQIEEGAVRDGLDATRWAGRF- 283

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIA 406
                S    + VD AH  ++ + +  +I    +G   I++ G   D++  K   + +I 
Sbjct: 284 --TCLSEDPVVIVDGAHNEDAAKKLRTSIERYFTGEELILIMGVFKDKEYEK---IVQIL 338

Query: 407 LDLADIAIVTDDNP---RSEDPEKIRAEIIHGIPG---FIEKGNRIEAIRTAIEML--NK 458
              A     T D P   R+   EK+   +   +        + +  +A+  A      + 
Sbjct: 339 CPSAKRVY-TVDLPNKKRTLPAEKLAECVRDCMTEQLSVYAEKSIGDAVAKAYTYATEDS 397

Query: 459 QDVLVVA 465
              +V+A
Sbjct: 398 GKRVVIA 404


>gi|187735187|ref|YP_001877299.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
 gi|187425239|gb|ACD04518.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
          Length = 460

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 103/268 (38%), Gaps = 21/268 (7%)

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRV 267
              N+  DH D + + +    +  R   +++P+   A++ ADD    +V+K A      V
Sbjct: 184 VINNIEFDHADIYNSLEEIKLS-FRRLTQIIPRNGLALVNADDPNCLDVVKGAPCPVKTV 242

Query: 268 LSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGI 327
                    I +  V    +    T+    +   +  P+ GEF + NA +A       G+
Sbjct: 243 GFSD--SSNIRILDVETSTDGSHFTL----EGTRYYVPMIGEFNIRNAAMAIAAAQFAGL 296

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386
           +   + + + +   V  R E  G    G  +  D+AH   +++  +  +R      RI  
Sbjct: 297 NVKQLADSMSRFEGVARRQEVKGV-VNGISVVDDFAHHPTAIKQAILGLRQRYPESRIWA 355

Query: 387 VFGCGGDRDQGKRPIM-GKIALDLA--DI-AIVTDDNPR------SEDPEKIRAEIIHGI 436
           +F    +    +R I   ++AL LA  D   +   D+P         D  K+  ++    
Sbjct: 356 IFEPRSN--TTRRNIFQNELALSLATADFPVVAAVDHPDKVALEERLDLTKLSNDLSALG 413

Query: 437 PGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +  G+  E +    +     DV++V
Sbjct: 414 KDALIGGHAQEIVSAVCKKAQPGDVILV 441


>gi|93005300|ref|YP_579737.1| FolC bifunctional protein [Psychrobacter cryohalolentis K5]
 gi|92392978|gb|ABE74253.1| FolC bifunctional protein [Psychrobacter cryohalolentis K5]
          Length = 457

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 98/403 (24%), Gaps = 39/403 (9%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
             + L +  S         +  V GT+GK S  + + Q+CQ +G  +             
Sbjct: 45  VAEALGVVQSAKDD---AYVFTVAGTNGKGSTTAVIAQMCQAAGYKTALYQSPHLSVFNE 101

Query: 158 QDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH------GLDQHRLDGIKLIAGSFTN 211
           +              A             +  S         L         +       
Sbjct: 102 RVRIDGEMVSDETLIAAFSKVEAARLQCDLTLSFFEMTTLAALLIFAEADCDVWVLEVGL 161

Query: 212 LGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADD-----AYSKEVMKRAHNAGCR 266
            GR  +             + +       ++   I A+           +          
Sbjct: 162 GGRLDVVNIIDPDMAVITNIAIDHVDWLGDNVEAIGAEKAGILRDGISVIYGATEMPNSV 221

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
             ++       +       + +   T          L        + N   A    +A  
Sbjct: 222 QQAIDKHQATCYQVSKEFSYCENNSTRWQYSNAAVTLQLPRPALSLTNTANALSAVLASP 281

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII- 385
           +D          L  V     F            D AH    +E +L  +  +    +  
Sbjct: 282 LDVDTNAIEQA-LKTVKLAGRFDYREVHERHWLFDVAHNDQGVEFLLAQLVPLWQQHLTQ 340

Query: 386 ------------------VVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTDDNPR---SE 423
                             ++F   GD+D  K       A   ++D  I   D PR   +E
Sbjct: 341 QSTSEQVNQTSGEPATIKMLFSMLGDKDINKVVQRLTTAGLPISDWFIAEIDYPRAATTE 400

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
             + I A  +       E     EA    I     QD++VV G
Sbjct: 401 HLQGILASYVDD-SQIHEFARLQEATHAIINASQPQDLIVVCG 442


>gi|16128084|ref|NP_414633.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89106974|ref|AP_000754.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170021553|ref|YP_001726507.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079730|ref|YP_001729050.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188495590|ref|ZP_03002860.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|238899492|ref|YP_002925288.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|254037506|ref|ZP_04871583.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|256025405|ref|ZP_05439270.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia sp. 4_1_40B]
 gi|300905500|ref|ZP_07123264.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300919646|ref|ZP_07136137.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300923127|ref|ZP_07139187.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300949891|ref|ZP_07163854.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300955957|ref|ZP_07168290.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|301028574|ref|ZP_07191804.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|301303808|ref|ZP_07209928.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|301330128|ref|ZP_07222797.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301646403|ref|ZP_07246285.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|307136692|ref|ZP_07496048.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli H736]
 gi|331640544|ref|ZP_08341692.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|127536|sp|P17952|MURC_ECOLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028987|sp|B1IR87|MURC_ECOLC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620033|sp|B1XC68|MURC_ECODH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509769|sp|C4ZRI6|MURC_ECOBW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|40859|emb|CAA38868.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli]
 gi|42056|emb|CAA36868.1| (UDP-N-acetylmuramate: L-alanine ligase) (AA 1-491) [Escherichia
           coli]
 gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|21321972|dbj|BAB96659.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169756481|gb|ACA79180.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli ATCC 8739]
 gi|169887565|gb|ACB01272.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188490789|gb|EDU65892.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|226840612|gb|EEH72614.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|238863750|gb|ACR65748.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|260450702|gb|ACX41124.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli DH1]
 gi|299878385|gb|EFI86596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|300317177|gb|EFJ66961.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|300402650|gb|EFJ86188.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300413286|gb|EFJ96596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300420582|gb|EFK03893.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300450723|gb|EFK14343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300840935|gb|EFK68695.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|300843875|gb|EFK71635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301075373|gb|EFK90179.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|309700302|emb|CBI99590.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli ETEC H10407]
 gi|315134785|dbj|BAJ41944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli DH1]
 gi|315253165|gb|EFU33133.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 85-1]
 gi|315616130|gb|EFU96749.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 3431]
 gi|323939869|gb|EGB36069.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E482]
 gi|331040290|gb|EGI12497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|228660|prf||1808265A murC gene
          Length = 491

 Score = 43.7 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 121/416 (29%), Gaps = 63/416 (15%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNK----QDVLVVAGKGH 469
           P        +   I   G    I   +         EML       D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPA----RVAEMLAPVLTGNDLILVQGAGN 467


>gi|306968291|ref|ZP_07480952.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
 gi|308354132|gb|EFP42983.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
          Length = 432

 Score = 43.7 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 52  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 100

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 101 --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 157

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 158 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 216

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 217 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 276

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 277 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 336

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 337 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 393

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 394 LRAELRPGDVVLV 406


>gi|306784930|ref|ZP_07423252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
 gi|308330389|gb|EFP19240.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
          Length = 435

 Score = 43.7 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 55  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 103

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 104 --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 160

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 161 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 219

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 220 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 279

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 280 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 339

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 340 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 396

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 397 LRAELRPGDVVLV 409


>gi|167966741|ref|ZP_02549018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis H37Ra]
          Length = 445

 Score = 43.7 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 65  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 113

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 114 --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 170

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 171 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 229

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 230 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 289

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 290 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 349

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 350 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 406

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 407 LRAELRPGDVVLV 419


>gi|89891833|ref|ZP_01203335.1| folylpolyglutamate synthase [Flavobacteria bacterium BBFL7]
 gi|89515988|gb|EAS18653.1| folylpolyglutamate synthase [Flavobacteria bacterium BBFL7]
          Length = 405

 Score = 43.7 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 41/358 (11%), Positives = 97/358 (27%), Gaps = 7/358 (1%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY-- 169
                 + V GT+GK S    +  + Q +G                +        P    
Sbjct: 43  HLSFATIHVAGTNGKGSTCHMMASVLQEAGYKVGLYTSPHLKDFRERIRINGVMVPKDYV 102

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
           +     +        +S    + G+         +            +D         + 
Sbjct: 103 VDFVNKHKLFFESNQLSFFEMTVGMAFQYFKDSNIDIAIIETGLGGRLDSTNIITPLVSV 162

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
              + ++ +      ++      +  +            +              AI+++ 
Sbjct: 163 ITNIDKDHVVMLGNTLVKIAGEKAGIIKNDLPVVIGERRASLRSLFRESAISKNAIYHQV 222

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
              +     D    +          AL          I    +   L  +    G     
Sbjct: 223 NHRLKPLETDLKGTYQKDNVRVACEALSVLNQTSDYEISQRHLNSGLLNVVSNTGLRGRY 282

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIMGKIALD 408
                  R+  D AH    ++ ++K ++     ++ +V G   D+D  +   +M K A  
Sbjct: 283 ELLQVQPRVIADTAHNKAGIKTLVKQLKLEKFNKLHIVMGMVSDKDVDQVLSLMPKKAFY 342

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                I   +  R  + + + A        + +  +  +A+  A  + +  D++VV G
Sbjct: 343 Y----IAKPNVIRGMEIDVLSAFFKKHQLNYKKFNSVSDALDKAKSLAHSDDLIVVTG 396


>gi|260201266|ref|ZP_05768757.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289443657|ref|ZP_06433401.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289416576|gb|EFD13816.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
          Length = 494

 Score = 43.7 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 101/285 (35%), Gaps = 22/285 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY  A    F E +      ++  DD     + +RA   
Sbjct: 183 PHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGALVVCTDDPGGAALAQRATEL 241

Query: 264 GCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           G RVL  G          + +          H +    ++           +PG     N
Sbjct: 242 GIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVPGRHMALN 301

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEM 371
           AL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    +  
Sbjct: 302 ALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTEISA 361

Query: 372 ILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            L   R +      GR +VVF      R +      G+ AL+ AD   V D     E P 
Sbjct: 362 TLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGR-ALNAADEVFVLDVYGAREQPL 420

Query: 427 KIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                A +   +        +     +      +  DV+V  G G
Sbjct: 421 AGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIVTMGAG 465


>gi|238026130|ref|YP_002910361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           glumae BGR1]
 gi|237875324|gb|ACR27657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           glumae BGR1]
          Length = 503

 Score = 43.7 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 13/138 (9%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
            SA +L  L +      R E + +      +         +    L  +          V
Sbjct: 343 PSAALLHGLREYRGEAHRVELIASLDGVDYVDDSKGTNVGATVAALDGLAQ------RAV 396

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRI 446
              GGD        +           ++   D PR      IRA +       +E     
Sbjct: 397 LIAGGDGKGQDFSPLAAPVARWCRAVMLIGRDAPR------IRAALADSGVPLVEHATLE 450

Query: 447 EAIRTAIEMLNKQDVLVV 464
            A+R A E+    D +++
Sbjct: 451 AAVRAASELAEPGDAVLL 468


>gi|215411876|ref|ZP_03420658.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298525651|ref|ZP_07013060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308376925|ref|ZP_07668381.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
 gi|298495445|gb|EFI30739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308349502|gb|EFP38353.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
          Length = 439

 Score = 43.7 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 59  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 107

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 108 --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 164

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 165 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 223

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 224 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 283

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 284 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 343

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 344 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 400

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 401 LRAELRPGDVVLV 413


>gi|2177094|gb|AAB60787.1| UDP-MurNAc:L-alanine ligase [Escherichia coli]
          Length = 491

 Score = 43.7 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 120/416 (28%), Gaps = 63/416 (15%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRGGRIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF        E V   S    +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSDTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNK----QDVLVVAGKGH 469
           P        +   I   G    I   +         EML       D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPA----RVAEMLAPVLTGNDLILVQGAGN 467


>gi|312970185|ref|ZP_07784367.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
 gi|310337683|gb|EFQ02794.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
          Length = 491

 Score = 43.7 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 121/416 (29%), Gaps = 63/416 (15%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIITNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNK----QDVLVVAGKGH 469
           P        +   I   G    I   +         EML       D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPA----RVAEMLAPVLTGNDLILVQGAGN 467


>gi|269219531|ref|ZP_06163385.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211110|gb|EEZ77450.1| UDP-N-acetylmuramate--alanine ligase [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 493

 Score = 43.7 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/145 (22%), Positives = 48/145 (33%), Gaps = 8/145 (5%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
             +   L        RFE  G  + G R+  DYAH    +E  L+  R +     + V  
Sbjct: 335 EEMASALSHFLGTGRRFELRG-EAGGVRVIDDYAHHPTEVEATLRAARAVVGDGALRVLF 393

Query: 390 CGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE--IIHGIP--GFIEKG 443
                 R         + AL LAD  +VT      EDP        +   +         
Sbjct: 394 QPHLYSRTANFADRFAE-ALSLADDVVVTSVYAAREDPTPGVEGDLVTSKMDPARAQFVP 452

Query: 444 NRIEAIRTAIEMLNKQDVLVVAGKG 468
           +R EA R         D+++  G G
Sbjct: 453 DRFEAARALAARARPGDLVMTVGAG 477


>gi|152980862|ref|YP_001353851.1| bifunctional folylpolyglutamate synthase / dihydrofolate synthase
           [Janthinobacterium sp. Marseille]
 gi|151280939|gb|ABR89349.1| bifunctional folylpolyglutamate synthase / dihydrofolate synthase
           [Janthinobacterium sp. Marseille]
          Length = 432

 Score = 43.7 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 22/168 (13%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            + L A           A  +     L  +PGRF+ +        + +D AH  ++   +
Sbjct: 256 SSVLAALEALRLRLPVGAQEVRTGLALVDLPGRFQVLPGQPT---VILDVAHNPHAAATL 312

Query: 373 LKNIRTITSGRI-IVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTD-DNPRSEDPEKI 428
            +N+  +        VFG   D+D       + G++     D   VTD   PR+    +I
Sbjct: 313 AQNLDNMNFAPYTYAVFGAMQDKDIDGVISHLKGRV-----DHWCVTDLPLPRAAGAAEI 367

Query: 429 RAEIIHGIPGFIEKGN----------RIEAIRTAIEMLNKQDVLVVAG 466
           R ++IH        G+            EA   A+    + D + V G
Sbjct: 368 RDKLIHAYGEVPPAGDSERSIQTFTSPAEAFANALSRAGENDRIAVFG 415


>gi|261867478|ref|YP_003255400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412810|gb|ACX82181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 434

 Score = 43.7 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 128/403 (31%), Gaps = 70/403 (17%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   +++           + VV +              +  + I+A+TG++GKS+V
Sbjct: 67  LIVISPGLAVKTPEIQTALQAGVEVVGDIE--------LFCREADKPIVAITGSNGKSTV 118

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ + +GL     G                   + L      L         +E 
Sbjct: 119 TTLVAEMAKAAGLRVGMGGNIGIP-------------ALSLLNQQHDL-------YVLEL 158

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +K +A +  N+  DH++ +   Q Y +AK+ ++         A+I A+
Sbjct: 159 SSFQLET--TYSLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNH----CQTAVINAE 212

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           DA +    +R         +           K   +   + V    E K       L G 
Sbjct: 213 DALTLPTTQRPQKQVSFGENHADYWLKTENNKTYLMAYDEAVLACDEMK-------LTGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               NAL A  L  A GI+   +   L     +  RF+          I    A    S 
Sbjct: 266 HNYMNALAAIALAQAAGINLTGIRTALCAFGGLEHRFQVAHIADGVRWINDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++   +G++ ++ G  G                 AD      +  R  +   I 
Sbjct: 326 VAALTGLQ--VAGKLHLLLGGDG---------------KGADF----SELARLINQPHIY 364

Query: 430 --------AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                    ++               AI      L   D++++
Sbjct: 365 CYCFGRDGKQLAALSSQSQLFDTMEHAIAAIRPQLQAGDMVLL 407


>gi|260853304|ref|YP_003227195.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257751953|dbj|BAI23455.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|323157842|gb|EFZ43945.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EPECa14]
          Length = 491

 Score = 43.7 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 121/410 (29%), Gaps = 55/410 (13%)

Query: 80  QDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQIC 137
            +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  I 
Sbjct: 93  PEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSSIY 141

Query: 138 QRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQ 196
             +G   +F  G                          +      + H     +      
Sbjct: 142 AEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADESD 179

Query: 197 HRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEV 256
                ++ +    TN+  DH+D +Q            F   LP    A++  DD   +E+
Sbjct: 180 ASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIREL 239

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
           + R                 +   +           +  + +        PG     NA 
Sbjct: 240 LPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAA 298

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTSNS 368
            A  +    GID   +L  LE       RF+F+G               +  DY H    
Sbjct: 299 AAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTE 358

Query: 369 LEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP- 425
           ++  +K  R     + +V+        R +        +     D  ++ +  P  E P 
Sbjct: 359 VDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEAPI 417

Query: 426 -----EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                  +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 418 PGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|256825476|ref|YP_003149436.1| UDP-N-acetylmuramate--alanine ligase [Kytococcus sedentarius DSM
           20547]
 gi|256688869|gb|ACV06671.1| UDP-N-acetylmuramate--alanine ligase [Kytococcus sedentarius DSM
           20547]
          Length = 518

 Score = 43.7 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQ 396
                 RF+  G  + G  +  DYAH  + +  +++    +   +G  +VV        +
Sbjct: 367 FAGASRRFQVRG-EAGGVVVVDDYAHNGDKVAAVVRTGAALARETGHRVVVAFQPHLFSR 425

Query: 397 GKRPIMGKIALDL--ADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIEA 448
             R    + A  L  AD  ++       E+P      + I   +              +A
Sbjct: 426 T-RDFAAEFAAGLDAADEVLLLPVFGAREEPLPGVSSQLIADRLTTSHRAVGSLEELPDA 484

Query: 449 IRTAIEMLNKQDVLVVAGKGH 469
           +   +E     D++++ G G+
Sbjct: 485 V---VESARPGDLVLLVGAGN 502


>gi|198274307|ref|ZP_03206839.1| hypothetical protein BACPLE_00451 [Bacteroides plebeius DSM 17135]
 gi|198272797|gb|EDY97066.1| hypothetical protein BACPLE_00451 [Bacteroides plebeius DSM 17135]
          Length = 458

 Score = 43.7 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 72/232 (31%), Gaps = 18/232 (7%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNA 315
           +K     G  V +   +    H + +     +          +       +P    + N 
Sbjct: 228 LKPDVQPGVTVYTYSTEKGDFHAENIRIDDGEIYFDYISPLGNITNVQLGVPVFVNIENG 287

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           + A  L    G  +  +   + +   V  RF+F    +       DYAH    +   + +
Sbjct: 288 IAAMALAQIGGATTEEIKAAMPQFRGVDRRFDF-KIKNSHIVFLSDYAHHPEEIRQSVSS 346

Query: 376 IRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTDDNPRSEDP------EK 427
           IR +   R I          +  R      A  L+  D  I+ D  P  E P      + 
Sbjct: 347 IRKLYPNRKITAVFQPHLYTRT-RDFYQDFADSLSLLDEVILLDIYPAREAPIPGVSSQL 405

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH-ETV--HIVT 476
           I   +  GI   +      E I   ++   K DVL+  G G  +     I  
Sbjct: 406 IYDNLRPGIEKSMCS---KEQIMEVLKN-KKLDVLITLGAGDIDNYVPQIYE 453


>gi|92114311|ref|YP_574239.1| UDP-N-acetylmuramate--L-alanine ligase [Chromohalobacter salexigens
           DSM 3043]
 gi|122419689|sp|Q1QVG8|MURC_CHRSD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91797401|gb|ABE59540.1| UDP-N-acetylmuramate--L-alanine ligase [Chromohalobacter salexigens
           DSM 3043]
          Length = 488

 Score = 43.7 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 111/354 (31%), Gaps = 46/354 (12%)

Query: 53  KEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSLFASRLY 110
             D H         GA+ +VVS+A  L++          I VV   R+   L+      +
Sbjct: 74  HVDEHAH-------GADVLVVSTAVDLENPEIRWAREHRIPVV---RRAEMLAELMRFRH 123

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           G      +AV GT GK++  S    +    G   +F IG    ++S   + RL     + 
Sbjct: 124 G------IAVAGTHGKTTTTSLTSTLLAEGGLDPTFVIG--GKLTSAGTNARLGEGDYLV 175

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
                S  S                       ++ +    TN+  DH+  +    A    
Sbjct: 176 AEADESDASFLH--------------------LQPMVSIVTNIDADHMATYAGDFARLKD 215

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQ 289
               F   LP    A++  DD   + ++ R                 +          + 
Sbjct: 216 TFLEFLHNLPFYGLAVLCLDDDNVRGLLPRVQRQFVTYGFAEDADYRLRDFVQRGGEVQF 275

Query: 290 QVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
                      +    +PG     NAL A  +    G+D A + + L     V  RF+  
Sbjct: 276 TAERPPGMAPLEIRLGMPGRHNALNALAAIAVASDAGVDDAAIQQGLLHFAGVGRRFQVH 335

Query: 350 GTNSRG-----GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK 398
           G            +  DY H    +EM++  +R     R +V+        + +
Sbjct: 336 GHYPAPGGEGDVMLVDDYGHHPREVEMVIDAVRAGWPERRLVMLYQPHRYSRTR 389


>gi|94311399|ref|YP_584609.1| FolC bifunctional protein [Cupriavidus metallidurans CH34]
 gi|93355251|gb|ABF09340.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Cupriavidus metallidurans CH34]
          Length = 436

 Score = 43.7 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 59/392 (15%), Positives = 116/392 (29%), Gaps = 48/392 (12%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT-------- 163
           +    +  V GT+GK S  + +++I   +G           I    +             
Sbjct: 39  RIDAVVFTVGGTNGKGSTCAILERILLEAGYKVGLHTSPHLIQFNERARLNGEQATDAQL 98

Query: 164 -------------TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAG 207
                           P+ L        +           +  L+     RLD + +I  
Sbjct: 99  LPHFEAVERARTSFADPVSLTYFEFTTLAIIHMFAEAGLDAIILEVGLGGRLDAVNVIDT 158

Query: 208 SFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-YSKEVMKRAHNAGCR 266
               +    ID+  TQ      +   +E+             D    + V+  A   G  
Sbjct: 159 DCAIITSVDIDH--TQYLGDTREKIGYEKAGIFRPHVPAIVGDPLPPQSVIDHAEAIGAE 216

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
           +  VG   +    +                            +    +A +AA   +   
Sbjct: 217 LWLVGRDFRHQAAQGQERQQWDWASRDRKLNGLGYPALRGANQLLNASAALAALQAMRSR 276

Query: 327 IDS-ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRI- 384
           +   A  + +      +PGRF+ +        + +D AH  ++   + +N+  +   R  
Sbjct: 277 LPVSAQEVRNGLAFVELPGRFQVLPGRPA---VILDVAHNPHAAATLGQNLENMGFFRYT 333

Query: 385 IVVFGCGGDRDQGKRPIMGKIALDLADIA--IVTDDNP--RSEDPEKIRAEIIH-GIPG- 438
             VFG   D+D      +  +   +AD        D P  R+    ++R ++   G    
Sbjct: 334 YAVFGAMHDKD------IAGVLQHVADKVDHWCLCDLPTDRAATAAELREKLEATGFREG 387

Query: 439 ----FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                    +   A R A+E   + D ++V G
Sbjct: 388 PDNTVACFSSPELAYRDAVERATENDRILVFG 419


>gi|82775498|ref|YP_401845.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella dysenteriae Sd197]
 gi|309787233|ref|ZP_07681845.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
 gi|109892738|sp|Q32K01|MURC_SHIDS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81239646|gb|ABB60356.1| UDP-N-acetyl-muramate:alanine ligase [Shigella dysenteriae Sd197]
 gi|308924811|gb|EFP70306.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
          Length = 491

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPIRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLAPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|56412398|ref|YP_149473.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|167550679|ref|ZP_02344436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168234890|ref|ZP_02659948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168262189|ref|ZP_02684162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464322|ref|ZP_02698225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820880|ref|ZP_02832880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442341|ref|YP_002039358.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194736856|ref|YP_002113144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361334|ref|YP_002140969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|200387467|ref|ZP_03214079.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926704|ref|ZP_03217906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238911183|ref|ZP_04655020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|62900669|sp|Q5PDC2|MURD_SALPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56126655|gb|AAV76161.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194401004|gb|ACF61226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194712358|gb|ACF91579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633046|gb|EDX51500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092809|emb|CAR58235.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197291916|gb|EDY31266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199604565|gb|EDZ03110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323369|gb|EDZ08564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205324366|gb|EDZ12205.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205342390|gb|EDZ29154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348968|gb|EDZ35599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320084369|emb|CBY94162.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615947|gb|EFY12864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620731|gb|EFY17591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623917|gb|EFY20754.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627365|gb|EFY24156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630672|gb|EFY27436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638108|gb|EFY34809.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640594|gb|EFY37245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647735|gb|EFY44220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648084|gb|EFY44551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656884|gb|EFY53170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657406|gb|EFY53678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663725|gb|EFY59925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666558|gb|EFY62736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672283|gb|EFY68395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676405|gb|EFY72476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322679502|gb|EFY75547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686169|gb|EFY82153.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195013|gb|EFZ80199.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323200078|gb|EFZ85165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201101|gb|EFZ86170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209498|gb|EFZ94431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212250|gb|EFZ97074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216555|gb|EGA01281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219904|gb|EGA04382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225816|gb|EGA10036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228642|gb|EGA12771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236744|gb|EGA20820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239755|gb|EGA23802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242197|gb|EGA26226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249379|gb|EGA33295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252288|gb|EGA36139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256622|gb|EGA40352.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262991|gb|EGA46541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265476|gb|EGA48972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271736|gb|EGA55154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 438

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L  A   L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDADREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +      + A       +  K    ++ 
Sbjct: 158 ELSSFQLET--TSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAK---LRVYEKAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGVNMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +         
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSPLARYLTG-------DRIRLYCFGRDGAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|325978424|ref|YP_004288140.1| folylpolyglutamate synthase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178352|emb|CBZ48396.1| folC [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 417

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 78/304 (25%), Gaps = 23/304 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +     V    +EA   GL       +                    
Sbjct: 119 TEFEVITVLMFEYFGHMHPVDIAFIEAGMGGLYDS--TNVFKALAVICPSIGLDHQNVLG 176

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
           Q     A+ +                DD     + K                        
Sbjct: 177 QTYAEIAEQKAGVLKEHVPFIFATERDDVRQVFLKKAQACGSQTYEFKKDFSVNETENGF 236

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +    I +       +              A  L       +  ++++       
Sbjct: 237 DYQGQENLEDIRLAMLGKHQISNASL-----AITAALLLSKTYPKVTKEIIKYGLAQTHW 291

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E +  N     + +D AH + S++ ++  ++      + ++F     +       M
Sbjct: 292 VGRTELMFPN-----VMIDGAHNNESVQALVNVMQAYKDKNLHILFAAIDTKPID---SM 343

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             +   LAD+ + T     S         + +    + +  +  + ++  I+  +K D  
Sbjct: 344 LALLSQLADVDVTTFVYHNSL-------ALENYPEQYHKVPDWKDWVKQ-IDSDSKDDFY 395

Query: 463 VVAG 466
           ++ G
Sbjct: 396 LITG 399


>gi|312984120|ref|ZP_07791467.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           CTV-05]
 gi|310894474|gb|EFQ43549.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus crispatus
           CTV-05]
          Length = 437

 Score = 43.3 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +     +   ++K         +    +  +F     L G+  + NA     
Sbjct: 222 IPKYTYGFNDTDDFQATQIEKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNATAVVA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + + L        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMEDIKKGLPSFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|310287120|ref|YP_003938378.1| Folylpolyglutamate synthase/dihydrofolate synthase [Bifidobacterium
           bifidum S17]
 gi|309251056|gb|ADO52804.1| Folylpolyglutamate synthase/Dihydrofolate synthase [Bifidobacterium
           bifidum S17]
          Length = 546

 Score = 43.3 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 114/403 (28%), Gaps = 50/403 (12%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
           + +H   ++ VTGT+GK S A   + +C+  GL +             +           
Sbjct: 46  HPEHSFRVIHVTGTNGKGSTARMAEALCRAYGLRTGLYTSPHLERINERIAIDGQELSDD 105

Query: 170 LAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLG----------RDHIDY 219
               +       V  V  + +  G        +      +                   +
Sbjct: 106 DFVDMWDQIKDLVAIVDAKMAESGRPPMSFFEVLTSMAIWKFADAPVDVAVVEVGMGGLW 165

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADD---------AYSKEVMKRAHNAGCRVLSV 270
             T     +A +    ++   +                       ++    +    +  +
Sbjct: 166 DATNVLDADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEERVMPIL 225

Query: 271 GYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
               +  H   V   +  +                 P        +   G   A    +A
Sbjct: 226 MEAAERNHATLVRDGYEMEVTDRVPAVGGQIATLHTPNGVYEQVPIAKFGEHQAHNALAA 285

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRG-------------GRIYVDYAHTSNSLEMILKNIR 377
           L           P   + VG   +G               I +D  H  N+ E + K I 
Sbjct: 286 LAAAEAVIPVNGPLNGDLVGQALQGVKVPGRIEQIRTSPTIILDGGHNVNAAEALRKAIE 345

Query: 378 T-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRS-----EDPEKIRAE 431
                 +++ V    GD+          +   +    +VT+++ R      E+ EKI  +
Sbjct: 346 ESYDFTQLVGVVAMMGDKQVE---EYLGVLEPILSQVVVTENSWRDRVMPAEELEKIAVQ 402

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
           +  G    I + +  +AI+ A++M++ +D         ++V G
Sbjct: 403 VF-GRDRVIREDSLPDAIQKAVDMVDVEDETGVGYGRGVLVCG 444


>gi|161612470|ref|YP_001586435.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161361834|gb|ABX65602.1| hypothetical protein SPAB_00160 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 438

 Score = 43.3 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L  A   L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDADREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +      + A       +  K    ++ 
Sbjct: 158 ELSSFQLET--TSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAK---LRVYEKAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGVNMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +         
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSPLARYLTG-------DRIRLYCFGRDGAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|116328899|ref|YP_798619.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116330494|ref|YP_800212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281748|sp|Q04UG6|MURD_LEPBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122283318|sp|Q04Z09|MURD_LEPBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116121643|gb|ABJ79686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124183|gb|ABJ75454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score = 43.3 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 96/274 (35%), Gaps = 31/274 (11%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               I+ +TGT GKS+  S V  + ++      + G      +           PI LA 
Sbjct: 100 FKGKIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCK------EPISLA- 152

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                         +E SS+ L+      + L    F NL  DH++ H+T + YF AK++
Sbjct: 153 -------------VLELSSYQLEDS--SPLDLNVSVFLNLAPDHLERHETMENYFRAKLK 197

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           + +   P  S  +        +E +  + +  C++LS G       +    +   +    
Sbjct: 198 IADLQNPNHSLIVS----EKIREKILNSTSVQCKLLSFGRATTSEAILDESSSEIRTSKF 253

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I    + +      PG     N   A     AIG     +   +     +P RF+  G  
Sbjct: 254 IYDISRFYL-----PGTHNRENLAAAILASEAIGGKPESIQAQIPFFMGLPHRFQIAGEK 308

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
                I    +   +S+   +   + +    +I+
Sbjct: 309 RGISFINDSKSTNLHSMLAGMSAWKNLDRTCLIL 342


>gi|309807734|ref|ZP_07701668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168994|gb|EFO71078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
          Length = 460

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 113/393 (28%), Gaps = 52/393 (13%)

Query: 76  AYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
            Y      A   +N  I+        +S              + VTG++GK++     Q+
Sbjct: 84  PYENPLVQAAKAANVSIITEPEVALAVS----------SAPYVCVTGSNGKTTTVMLTQR 133

Query: 136 IC----QRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
           I      + G  ++ +G      S                     L +     + VE SS
Sbjct: 134 IMENHLHKFGGHAYAVGNIGVPISEVV------------------LKANANDLLVVEISS 175

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             L          +A         HIDYH+T + Y  AK+R+ +     +     +    
Sbjct: 176 FQL-MGVNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN 234

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
             ++ +               Q  +        I  +   + +           +PG   
Sbjct: 235 ILEQELSLTKANVVTFSEESTQADY-------YIGEQYLESQADHEIMKISDIKIPGRHN 287

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
             N+LVA  +   +G     +   L        R ++V T +         +    +  +
Sbjct: 288 QQNSLVAIAISKIMGASDEDIRSVLSTFTGAKHRLQYVMTYNNRRIYNDSKSTNIEAASV 347

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
            + +          V+   G DR       +  +        ++       E    +   
Sbjct: 348 AIPSFSQPE-----VLIAGGLDRGFTF-DELVPLLKKHVKAIVL-----YGETKYLLADA 396

Query: 432 I-IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
               GI   +      EA+  A ++ N  DVL+
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLL 429


>gi|295098592|emb|CBK87682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 438

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 133/398 (33%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S    ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGMALAHPSLNAAADAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G +    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGKNVGVGGNIGLPALMLLDKG--------------------CELFVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLHAAAATILNVTEDHMDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCISFGINMGDYH-------LNRQQGETWLRVKGEKVLNVKEMMLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  +  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRSSSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G             GK A   +    +  DN R     +
Sbjct: 326 STEAALNGL--HVDGTLYLLLGGD-----------GKSADFSSLKQYLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             +E+    P   E+     +A+R     +   D++++
Sbjct: 373 DGSELAALRPEVAEQTETMEQAMRLIAPRVKPGDMVLL 410


>gi|66044910|ref|YP_234751.1| folylpolyglutamate synthetase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255617|gb|AAY36713.1| Folylpolyglutamate synthetase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 434

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 104/374 (27%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPARRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY--------LSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHID 218
              ++          +     +   A+    +Q RLD + L           NL    + 
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADMA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FI 277
              +        +    E +  E   I  A                 +   +G       
Sbjct: 158 LVTSIGVDHAEYLGDTRESVAFEKAGIFRAGCPALCGDPAPPEPLLAKARELGCPLLLRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA-LVLEHL 336
               +    +         G+  +       +  + NA +A      +G          +
Sbjct: 218 RDFDLSIGDDSWDWRGVAHGEQIELRGLPLLDLPMQNAALALQAFALLGYPLQPDATGKV 277

Query: 337 EKLHVVPGRFEFVGTNSRGG--RIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGD 393
                + GR +       G    + +D  H  ++ +    +  R    G+   VFG   D
Sbjct: 278 LAETRLAGRLDRRVVKWHGKSLNLLLDVGHNPHAAQFLGQRLARQPVGGKRRAVFGLLSD 337

Query: 394 RDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D       +  +  + A   + T  +  +E+ +     +   +  +        A+   
Sbjct: 338 KDLDGVVAHLAPVIEEWAVAPLPTSRSRPAEELQTALQNLGARVTSYQSI---ALALEAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|289177307|gb|ADC84553.1| Folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 530

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 57/401 (14%), Positives = 120/401 (29%), Gaps = 54/401 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIY 169
              I+ +TGT+GK S A   + IC+  G+ +                    RL+    + 
Sbjct: 54  SFRIIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEHVSERIVIDGQRLSDDDFVE 113

Query: 170 LAKALSY-------------------------LSSQGVTHVSVEASSHGLDQH-RLDGIK 203
           L   +                           ++        V+ +   +    R D   
Sbjct: 114 LWNQVKDFVALVDKKMDEEGAPRMSFFEVLTAMAIWKFADAPVDVAIVEVGMGGRWDATN 173

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           ++      +G   +D+            +    ++     AII      S+ +      A
Sbjct: 174 VLDADAAVIGPIDMDHMAWLGDTVEQIAQEKVGIIKPGCTAIIGRQPHESEVMPIIEQAA 233

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++   G    +         Q VT+ +    +  +          +  +AA    
Sbjct: 234 AENHATIIRDGYEAEVVSRMPAVGGQMVTLRMPNGTYADVPVDKFGEHQAHNALAALCAC 293

Query: 324 AIGIDSA-----LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            + I  +      ++        +PGR E V ++     I +D  H  N+ E +   I  
Sbjct: 294 EVVIPVSGALDGDLVAEALSSVKIPGRIEQVRSSPT---IIIDGGHNVNAAEALRAAIEE 350

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGI 436
                +++ V     D+          +   +    IVT+++      P    AEI  G+
Sbjct: 351 NYDFTQLVAVVAMMEDKQVE---EYLGVLEPIVSELIVTENSWTDRVMPADKLAEIARGV 407

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
                     +  +AI+ A+  ++  D         +++ G
Sbjct: 408 FGPERVTCIPSLPDAIQEAVNRVDADDELGVGYGHGVLICG 448


>gi|284051263|ref|ZP_06381473.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrospira platensis str.
           Paraca]
          Length = 190

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 32/161 (19%)

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-------------------TI 379
                 RFE+ G N  G +   DYAH  + + + L   R                    I
Sbjct: 6   FPGTKRRFEYRG-NYGGIQFVDDYAHHPSEIRVTLAAARGRLQNSSGLSSTFSETAITPI 64

Query: 380 TSGRII--VVFGCGGDRDQGKRPIMGKIALDL--ADIAIVTDD------NPRSEDPEKIR 429
             G  I  VV      R      ++   A     AD+ ++T+       NP   + +++ 
Sbjct: 65  HPGSEIKRVVAIFQPHRYSRTETLLEDFAQCFGDADLVMLTEIYSAGEANPGRINGQQLA 124

Query: 430 AEIIHGIPGFIEKGNRIEAIR-TAIEMLNKQDVLVVAGKGH 469
           A I    P    + +  +A++    ++L   D+++  G G+
Sbjct: 125 ARIAENHPHVDYQPSL-DAVKTRLFQLLKPGDLVLFLGAGN 164


>gi|297562328|ref|YP_003681302.1| FolC bifunctional protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846776|gb|ADH68796.1| FolC bifunctional protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 450

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V T+     I  D AH    +      +    T  R++ V     D+D      
Sbjct: 307 PGRMEVVRTSPT---IIADAAHNPAGMTATAAAVEEAFTFSRLVGVVAIMADKDVEG--- 360

Query: 402 MGKIALDLADIAIVT-DDNPRSEDPEKI--RAEIIHGIPGFIEKGNRIEAIRTAI 453
           + +    L D  +VT + +PRS +PE++   A+ I G      +    +AI  A+
Sbjct: 361 ILEPLEPLLDEIVVTRNSSPRSLEPERLSNVAQHIFGEERVHVEPRLDDAIDRAV 415


>gi|238898844|ref|YP_002924526.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259509775|sp|C4K735|MURC_HAMD5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229466604|gb|ACQ68378.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 493

 Score = 43.3 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 66/421 (15%), Positives = 132/421 (31%), Gaps = 47/421 (11%)

Query: 66  QGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSG 125
           + A  +VVSSA   +D    + ++   + V    + L+      +G      +A+ GT G
Sbjct: 77  KNASVVVVSSAIP-EDNPEILAAHEARIPVIQRAEMLAELMRFRHG------IAIAGTHG 129

Query: 126 KSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHV 185
           K++  + V  I  ++GL    +     I +  +  +L +   + +    S  S       
Sbjct: 130 KTTTTAMVASIYAQAGLDPTFV-NGGLIKAAGKHAQLGSSRYLIVEADESDASFIH---- 184

Query: 186 SVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAI 245
                           ++ +    TN+  DH+D +Q    +       F   LP    AI
Sbjct: 185 ----------------LQPLVAIVTNIEADHMDTYQGNFEHLKQTFINFLHNLPFYGRAI 228

Query: 246 IYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP 305
           +  DD   + ++ R                 I   +     +   +    +         
Sbjct: 229 LCIDDQVIRTLLPRIARHITTYGFSEDADIKITGYEQKEFTSYFMLERVHKP-ILKIQLN 287

Query: 306 LPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF--------EFVGTNSRGGR 357
            PG     NA  A  +    G++   +L+ L        RF        + V        
Sbjct: 288 APGRHNALNAAAAVAVATEEGVEDEHILQALSFFQGTGRRFDCLGIFPLQPVNGQQGEVM 347

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKIALDLADIAIV 415
           +  DY H    +   +K  R     + +V+        + +        +     DI ++
Sbjct: 348 LIDDYGHHPTEVAATIKAARVGWPTKRLVMIFQPHRYSRTRDLYDDFVNVLSQ-VDILLM 406

Query: 416 TDDNPRSEDPE------KIRAEIIHGIPGF-IEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +     E P        +   I        I   +  +      + L + D+++V G G
Sbjct: 407 LEIYSAGESPIPDISSCALCDSIRDFSHRMPILVTDHEKLPSLLAKQLKENDMVLVQGAG 466

Query: 469 H 469
           +
Sbjct: 467 N 467


>gi|186477373|ref|YP_001858843.1| UDP-N-acetylmuramate [Burkholderia phymatum STM815]
 gi|184193832|gb|ACC71797.1| UDP-N-acetylmuramate [Burkholderia phymatum STM815]
          Length = 469

 Score = 43.3 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 110/358 (30%), Gaps = 28/358 (7%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           + +LAV GT GK++  S +  + + +G++   +       +F    RLT  S   +    
Sbjct: 103 KWVLAVAGTHGKTTTTSMLTWLLEDAGMNPGFL-IGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +                 + +    +       NL  DH D      A       L 
Sbjct: 162 YDTAFFD-------------KRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLV 208

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             +           + A  + + +   +   R    G          V            
Sbjct: 209 RTVPGIGRVVSNGREVALDRVLARGCWSEVERFGVEGGWQALPAEDGVAVDERFAVYHNG 268

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
                 D+     GE    NA+ A      IG+  A   + L     V  R E  G +  
Sbjct: 269 ERVGVVDWQVQ--GEHNRMNAIAAIAAARHIGVPPAQAAKSLSTFRNVKRRMEVRG-SVD 325

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLADI 412
           G  +Y D+AH   +++  +  +RT        +      R    K  +M  ++   LAD 
Sbjct: 326 GVTVYDDFAHHPTAIQTTVAGLRTRIGRTNTRILAVLEPRSNTMKLGVMKAQLPASLADA 385

Query: 413 -AIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             +     P  +D       +  A +      F E  + ++A+  A       D ++V
Sbjct: 386 DLVFGYGAPSGKDALGWNLAEALAPMGDKAQAFNEIDSLVKAVVAA---AQPGDQVLV 440


>gi|261823018|ref|YP_003261124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium wasabiae WPP163]
 gi|261607031|gb|ACX89517.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           wasabiae WPP163]
          Length = 438

 Score = 43.3 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 126/410 (30%), Gaps = 78/410 (19%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALATPILCDAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLP-------------ALQLLEQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH + +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEHADLCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           + VG          +     +  + ++ E         L 
Sbjct: 213 ADDALTMPIRGADVRCRSFGVDVGDYH-------LNRQQGETWLRVNGERVLNTREIKLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+ I  A  L  L     +P RF+          I    A    
Sbjct: 266 GQHNYTNALAALALADAVKIPLASALTALTAFTGLPHRFQMAFERDGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI-------------MGKIALDLADIAI 414
           S E     +  +T    + +   G  +     P+              G+ A  LA    
Sbjct: 326 STEA---ALSGLTVDGTLHLLLGGDGKSADFSPLVPYFQGERIRLYCFGRDAAQLA---- 378

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                        +R EI        +     +A+R   E +   D++++
Sbjct: 379 ------------ALRPEIAE------QTETMEQAMRVIAERIKPGDMVLL 410


>gi|218753875|ref|ZP_03532671.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           GM 1503]
 gi|289762314|ref|ZP_06521692.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
 gi|289709820|gb|EFD73836.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis GM 1503]
          Length = 495

 Score = 43.3 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 101/285 (35%), Gaps = 22/285 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY  A    F E +      ++  DD     + +RA   
Sbjct: 184 PHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGALVVCTDDPGGAALAQRATEL 242

Query: 264 GCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           G RVL  G          + +          H +    ++           +PG     N
Sbjct: 243 GIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVPGRHMALN 302

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEM 371
           AL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    +  
Sbjct: 303 ALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTEISA 362

Query: 372 ILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            L   R +      GR +VVF      R +      G+ AL+ AD   V D     E P 
Sbjct: 363 TLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGR-ALNAADEVFVLDVYGAREQPL 421

Query: 427 KIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                A +   +        +     +      +  DV+V  G G
Sbjct: 422 AGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIVTMGAG 466


>gi|94501144|ref|ZP_01307667.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanobacter sp. RED65]
 gi|94426720|gb|EAT11705.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanobacter sp. RED65]
          Length = 456

 Score = 43.3 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 111/360 (30%), Gaps = 31/360 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
             + ++AV GT GK++  S +  + +  G     +       +F    RL       +  
Sbjct: 101 KDKWVMAVAGTHGKTTTTSMLAWVLEDCGFQPGFL-IGGVPKNFGVSARLGESDFFVVEA 159

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                            S+    + +            N+  DH D  +   A    +  
Sbjct: 160 DEYD-------------SAFFDKRSKFVHYHGRTVILNNMEFDHADIFKDLDAIK-TQFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +P E   I  A+DA  K  +          L   ++ +  H+        + +  
Sbjct: 206 HLVRTIPSEGQIIFPANDANIKSTLDMGCWTPTVTLGGDWRAELKHVSGSVFEVYQGEQL 265

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +       +  +   G+  V NAL        +GI     +  L +   V  R E +  +
Sbjct: 266 V------GEVRWKQTGQHNVNNALACIAAAHHVGILPKDSIAALNRFVGVKRRMELI-CD 318

Query: 353 SRGGRIYVDYAHTS---NSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL 409
           ++  +IY D+AH      S    + N       R ++       R    +  + K     
Sbjct: 319 AKEVKIYDDFAHHPTAIESTLAGMANSGEFKRIRAVIEPRSNTMRMGVHKAELPKAVEQ- 377

Query: 410 ADIAIVTDDNPRSEDPEKIRAEI-----IHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD  I       + D E +  +      ++  P  +   +    I   ++     D +V+
Sbjct: 378 ADEIIWFQPKGLNWDMENVVEQCNIPNRVNDEPKSVLFDDIDAIIAHLVQTSEPGDGIVL 437


>gi|242374030|ref|ZP_04819604.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W1]
 gi|242348281|gb|EES39883.1| UDP-N-acetylmuramate--L-alanine ligase [Staphylococcus epidermidis
           M23864:W1]
          Length = 437

 Score = 43.3 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 92/305 (30%), Gaps = 40/305 (13%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
             +AVTG  GK+S    +  +      +SF IG  + +     D            +   
Sbjct: 102 TSVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMGLPGSDY-----FAFEACEYRR 156

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
           +  S    +  +                      TN+  DH DY +  +  ++A      
Sbjct: 157 HFLSYHPDYAIM----------------------TNIDFDHPDYFKNIEDVYDAFQD--- 191

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
            +      AII   D      +++             +   I+ K +       Q  + +
Sbjct: 192 -MAHNVKKAIIAWGDDDY---LRKLEVDVPIYYYGFKESDDIYAKNIQITEKGTQFDVYI 247

Query: 296 EGKDFDFL-FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            G+ +D    P  G+  + N L    +     +D   + E LE    V  RF     +  
Sbjct: 248 NGEYYDQFLSPQFGDHNILNTLSVIAISYLEKMDIENIKEALETFGGVKRRFNETKVS-- 305

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADI 412
              +  DYAH    +   +++ R     + +V         R Q             AD 
Sbjct: 306 NQVLVDDYAHHPREISATIESARKKYPNKEVVAVFQPHTFSRTQAFLDEFASSLSK-ADQ 364

Query: 413 AIVTD 417
             + +
Sbjct: 365 VFLCE 369


>gi|222151544|ref|YP_002560700.1| folylpolyglutamate synthase homolog [Macrococcus caseolyticus
           JCSC5402]
 gi|222120669|dbj|BAH18004.1| folylpolyglutamate synthase homolog [Macrococcus caseolyticus
           JCSC5402]
          Length = 420

 Score = 43.3 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 20/169 (11%)

Query: 305 PLPGEFQVYNALVAAGLCIAIGID-----SALVLEHLEKLHVVPGRFEFVGTNSRGGRIY 359
            + G  Q  NA +A    + +            + H  +     GR E          I 
Sbjct: 251 KMIGTHQQENAALAIATLLEMYDRGMLLLDFNKMIHAIEDTTWTGRIEK---IQEHPTII 307

Query: 360 VDYAHTSNSLEMILKNIRTITSGRII-VVFGCGGDRDQGKRPIMGKIALDLADIAIVTD- 417
           +D AH   S+E+++  +++  +G  I V+F     +  G+   M K   ++++   VT  
Sbjct: 308 LDGAHNLESIEVLVDTMKSHYAGHKIDVLFSAIDGKPIGR---MLKSLEEISEHFYVTSF 364

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           D P++   + +   + H     I+  +  + IR       + DVL+V G
Sbjct: 365 DFPKALPLDTLYEHVEH--DKRIKVKDYADFIRN-----YEGDVLLVTG 406


>gi|162447404|ref|YP_001620536.1| folylpolyglutamate synthase [Acholeplasma laidlawii PG-8A]
 gi|161985511|gb|ABX81160.1| folylpolyglutamate synthase [Acholeplasma laidlawii PG-8A]
          Length = 411

 Score = 43.3 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 106/370 (28%), Gaps = 36/370 (9%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT----TPSPIYLA 171
             + VTGT+GK SV     Q+   SG+          +    +             +   
Sbjct: 42  KKIHVTGTNGKGSVCMMTTQVLVESGIRVGTFISPYLVRFNERIKLNGKDIEDNDLLDSI 101

Query: 172 KALSYLSSQGVTHVSVEASSHGLD--QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNA 229
             +  L++    H  +  S   L      +  +                   T    ++ 
Sbjct: 102 NKVYELNNAYFEHSGLTLSFFELMTLMSLIYFVDNKVDVIVMEVGIGGLLDATNILNYDV 161

Query: 230 KMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG--------KFIHLKK 281
            +     +             A +K  + +        +  G               LK 
Sbjct: 162 SVITNVGMDHMRQLGNTLESIALNKLGILKEKGHLITSIDSGLHDLVKDYVSKMHSTLKI 221

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGL---CIAIGIDSALVLEHLEK 338
           +             + +    ++ L    +  N   A  +          +   +     
Sbjct: 222 IQKHDVTTISEFPHKIEYNHQIYKLSLLGEFQNTNAALVIEVIKYLFPNITEQTISEGLS 281

Query: 339 LHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV-FGCGGDRDQG 397
               PGR E V        + +D AH  ++++ ++ ++++I     I V F    D++  
Sbjct: 282 KTEHPGRLETVLPG-----VVLDGAHNIHAIKEVIFSLKSIFKVYNIHVLFSALSDKEPE 336

Query: 398 KRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
              +M       A    +T   + R ++ + +          F  + N   A++  I+  
Sbjct: 337 ---VMLNELKKYATTITLTAFPDARYKNLDFL---------PFNFELNPKTALKNLIKNK 384

Query: 457 NKQDVLVVAG 466
            + DV+ + G
Sbjct: 385 KENDVIFITG 394


>gi|161504749|ref|YP_001571861.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189082495|sp|A9MQC1|MURC_SALAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160866096|gb|ABX22719.1| hypothetical protein SARI_02872 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 491

 Score = 43.3 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 122/413 (29%), Gaps = 57/413 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +     D       PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSDDADVRVEDYQ-QIGPQGHFTLLRQGMPDLRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 ATAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGET 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  + I T +  +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRNRGKIDPILVSDPAQ-IATILAPVLTGNDLILVQGAGN 467


>gi|118474938|ref|YP_891972.1| hypothetical protein CFF8240_0797 [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414164|gb|ABK82584.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 326

 Score = 43.3 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           M++++L      EL N   I         ++    ++  ++ G+ F+A+   ++D  L  
Sbjct: 1   MRIENLTRLVDGELQNNPKIS-------MVSGFCLEADDVKNGFAFIALNATRDDAIL-- 51

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120
             AI  GA A++      + D          I+ VDN    +   A  +  +       +
Sbjct: 52  --AIQNGAYALITDLNLEIYD------DEIAIIKVDNLASSVLRLARFIATQKELKFFHL 103


>gi|312868758|ref|ZP_07728950.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus oris
           PB013-T2-3]
 gi|311095744|gb|EFQ53996.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus oris
           PB013-T2-3]
          Length = 435

 Score = 43.3 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 73/241 (30%), Gaps = 11/241 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY +       +    FE    +   AI    D  +  + K  
Sbjct: 162 AYHPDYAIMTNIDFDHPDYFKDIDDVRGS----FETYGRQVKKAIFAWGDDAN--LRKLD 215

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +        G    F                   + K   F   L GE  + N+L    
Sbjct: 216 VDVPVYYYGTGADDDFRAENIRRTPAGSTYDAYFRDRKLGTFTIHLYGEHSILNSLAVLA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +D   + + L     V  RF    T+    ++  DYAH  N ++  +   R   
Sbjct: 276 VAYMEKVDMDKIKQELANFSGVKRRF--SETDVADDKLIDDYAHHPNEIKATIDAARQKF 333

Query: 381 SGRIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVTDDNP--RSEDPEKIRAEIIHGIP 437
             + IV         +    I G  A    AD   VT      R +D     A++   IP
Sbjct: 334 PDKEIVAVFQPHTYSRLAAYIDGFAASLSKADKVFVTPIFSSIREQDGSVSSADLEAKIP 393

Query: 438 G 438
           G
Sbjct: 394 G 394


>gi|153852714|ref|ZP_01994151.1| hypothetical protein DORLON_00133 [Dorea longicatena DSM 13814]
 gi|149754356|gb|EDM64287.1| hypothetical protein DORLON_00133 [Dorea longicatena DSM 13814]
          Length = 446

 Score = 43.3 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 68/207 (32%), Gaps = 15/207 (7%)

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           +  +A   G     V      I       I   ++     +      +           A
Sbjct: 218 IKAKASELGVSCREVTKNAYEIQEVHRKYIAFSRRSAYDKDVIFQVPMCGCYQAMNAELA 277

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN 375
           L A+   +A         +         GR E V     G  I VD AH   ++E  +++
Sbjct: 278 LEASEYLLAGEEIHMDRWKEALAELHWEGRMERV-----GAHITVDGAHNPGAMEAFVES 332

Query: 376 IRTIT---SGRIIVVFGCGGDRDQGKRPIMGKIALDLADI--AIVTD-DNPRSEDPEKIR 429
           ++ +     G ++++F    D+       M +   +  D+   +VT  ++ R    E++ 
Sbjct: 333 VKALDESERGEMVLLFSAVSDKKYD---QMIEYLCENLDVKAYVVTQIEDERGVPAEELA 389

Query: 430 AEIIHGIPGFIEKGNR-IEAIRTAIEM 455
                     +    R  +A+RTA+  
Sbjct: 390 DVFRRYTDRPVYCKERLEDAVRTAMNE 416


>gi|312132485|ref|YP_003999824.1| murc [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689505|ref|YP_004209239.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis 157F]
 gi|311773413|gb|ADQ02901.1| MurC [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460841|dbj|BAJ71461.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 512

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 41/157 (26%), Gaps = 19/157 (12%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A              RF+  G   +   +  DYAH    +  +L   R       I V
Sbjct: 338 SPADAANAAGTFLGAARRFQVRGMVKQ-VTVVDDYAHHPTEIAALLDAARRRYPDSTIRV 396

Query: 388 FGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSE--------DPEKIRAEIIHGIP 437
                   + K       K     AD  I+T   P  E         P  I  +   G+ 
Sbjct: 397 IFQPHLFSRTKFFAHQFAKSLAK-ADDVIITGIFPAREKQADFPDISPSTIV-DAAAGLK 454

Query: 438 G------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       +   A +      +  DV+   G G
Sbjct: 455 DASAGTWIQPVEDMCLAAKMMAMRAHHGDVIFTVGAG 491


>gi|295693402|ref|YP_003602012.1| UDP-N-acetylmuramate--l-alanine ligase [Lactobacillus crispatus
           ST1]
 gi|295031508|emb|CBL50987.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           ST1]
          Length = 437

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                   +     +   +KK         +    +  +F     L G+  + N+     
Sbjct: 222 IPKYTYGFNDTDDFQATQIKKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNSTAVVA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + + L        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMEDIKKGLPSFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|154686943|ref|YP_001422104.1| hypothetical protein RBAM_025130 [Bacillus amyloliquefaciens FZB42]
 gi|154352794|gb|ABS74873.1| FolC [Bacillus amyloliquefaciens FZB42]
          Length = 430

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 12/140 (8%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRII-VVF 388
              + +  K    PGRFE + +      ++ D AH    +E + + IR   +G+ + VVF
Sbjct: 287 EEAMRNGLKKASWPGRFERLQSRPL---VFADGAHNEEGVETLTETIRQRFAGKNVHVVF 343

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGN-RI 446
               D+       M K     AD       D PR+   E +          F E  +   
Sbjct: 344 SALKDKPYQ---EMIKKLETEADSIHFVSFDFPRASSAEALYNASSLADKSFDENPDSVK 400

Query: 447 EAIRTAIEMLNKQDVLVVAG 466
           E I    +     DV+++ G
Sbjct: 401 EWIE---QKDGADDVIIITG 417


>gi|297624231|ref|YP_003705665.1| FolC bifunctional protein [Truepera radiovictrix DSM 17093]
 gi|297165411|gb|ADI15122.1| FolC bifunctional protein [Truepera radiovictrix DSM 17093]
          Length = 412

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 26/128 (20%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E    +  G  + +D AH  ++ E +L+  R       ++VFG         R  +
Sbjct: 276 PGRAER--FSLHGREVLLDGAHNPDAAEALLELARP----PFVLVFGAQ-------RKKL 322

Query: 403 GK----IALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNK 458
           G+    +    A+  ++TD      +P  +        PG        EA+R A+    K
Sbjct: 323 GEETLRVLEPHAERVVITD---VQGEPSALAQ------PGRNHIPEPREALREALSSAPK 373

Query: 459 QDVLVVAG 466
              ++VAG
Sbjct: 374 SAQVLVAG 381


>gi|332139619|ref|YP_004425357.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549641|gb|AEA96359.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 452

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 129/413 (31%), Gaps = 58/413 (14%)

Query: 60  IPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILA 119
           I  A+++G      + A           ++ P  ++DN  K                ++ 
Sbjct: 67  IGNAMSRG------NPAVEYVLNRNLPYTSGPQWLLDNLLK-------------DRWVIG 107

Query: 120 VTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLS 178
           ++GT GK++ +S V  I + +G    + IG        +     +    I   +  S   
Sbjct: 108 LSGTHGKTTTSSMVAWILEHAGLNPGYLIGGVPENFGVSARVGDSPFFVIEADEYDSAFF 167

Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238
            +    V                 +       NL  DH D      A    +      ++
Sbjct: 168 DKRSKFV---------------HYRPKTLVINNLEFDHADIFADLAAIQ-TQFHHLVRMV 211

Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK 298
           P+    +   +    ++++KR   +  + L   +        ++      +   +     
Sbjct: 212 PENGLILTPNNTPSIEDMLKRGCWSSRQSLGKEWHA------ELLKKDGSEFNVLHNGVI 265

Query: 299 DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI 358
                + L G+  V N L+A       G+     ++ L     V  R E  G    G  +
Sbjct: 266 VGTVNWSLVGQHNVDNGLMAIAAAHHAGVTLTDAIDALSLFKNVKRRMEVKG-EVNGITL 324

Query: 359 YVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMG----KIALDL--AD 411
           Y D+AH   ++   L  +R  + + RI+ V        +     MG     +A     AD
Sbjct: 325 YDDFAHHPTAIATTLDGLRKKVGNARILAVLEP-----RSNTMKMGIYKDTLANSWQKAD 379

Query: 412 IAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              + +  P   D   +   + H            + ++    +    D ++V
Sbjct: 380 EVYLYE--PEGMDW-SLVDSVAHSNAPTQCFKGVEKIVQGVCNVAQPGDHILV 429


>gi|306793625|ref|ZP_07431927.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308372153|ref|ZP_07427619.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308334223|gb|EFP23074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308338019|gb|EFP26870.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|323719312|gb|EGB28454.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis CDC1551A]
          Length = 431

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 51  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 99

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 100 --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 156

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 157 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 215

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 216 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 275

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 276 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 335

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 336 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 392

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 393 LRAELRPGDVVLV 405


>gi|299136796|ref|ZP_07029979.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidobacterium sp. MP5ACTX8]
 gi|298601311|gb|EFI57466.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidobacterium sp. MP5ACTX8]
          Length = 340

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 21/115 (18%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVS-SDSRHIQAGWI-FVAIVGNKEDGHL 58
           MKL+DL  +   EL+           E +I  ++         G + FVA          
Sbjct: 1   MKLKDLAERLGAELVVGDGQEAPG--EVEITGIAGI--EEAGPGHVTFVANP-------K 49

Query: 59  FIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKH 113
           +   A +  A A++V   ++            P L + N     +      Y   
Sbjct: 50  YAGLARSTRAAAVIVEPEFASI--------GVPTLRIKNPYLAFAKAIEVFYKPP 96


>gi|126663236|ref|ZP_01734234.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteria bacterium
           BAL38]
 gi|126624894|gb|EAZ95584.1| UDP-N-acetylmuramate--L-alanine ligase [Flavobacteria bacterium
           BAL38]
          Length = 448

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 5/159 (3%)

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   + +   +      +    +   +  F LPG   + NAL+A  +  + G+ + 
Sbjct: 233 NNDANFSAQNIRIENGFYVFDVKTPSELIENVQFGLPGHHNLTNALLALAMAKSYGVSNE 292

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            ++  L+    V  RF F            DYAH    +  + + +R +   + I+    
Sbjct: 293 NIIAALKSFKGVRRRFSFQIREE-NIVYIDDYAHHPTEINAVHQAVRELYPNKKIIAAFQ 351

Query: 391 GG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
                R +       +      D  ++ +  P  E P +
Sbjct: 352 PHLFSRTKDFVDGFAESLSQF-DEVLLLEIYPARELPME 389


>gi|56752431|ref|YP_173132.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           elongatus PCC 6301]
 gi|81300476|ref|YP_400684.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           elongatus PCC 7942]
 gi|62900667|sp|Q5MZA8|MURD_SYNP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063270|sp|Q31MM2|MURD_SYNE7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56687390|dbj|BAD80612.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus
           elongatus PCC 6301]
 gi|81169357|gb|ABB57697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus
           elongatus PCC 7942]
          Length = 463

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 130/401 (32%), Gaps = 43/401 (10%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IVVS             +    +      + L               +AVTGT+GK++ 
Sbjct: 70  CIVVSPGVPWDLPGLRQAAEELQI------ETLGELELAWRTLSDIPWVAVTGTNGKTTT 123

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + +  I +R+GL +   G                 +   +A+      ++ +  V  EA
Sbjct: 124 TALIAAIFERAGLQAPACGNIG-------------FAACEVARQQQQGEAKPLDWVIAEA 170

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS+ ++      +    G +T    DH++ H T + Y      +   LL +    ++  D
Sbjct: 171 SSYQIEAAAT--LAATIGLWTTFTPDHLNRHYTLENY----FTIKASLLDRAQQQVLNGD 224

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD-FLFPLPG 308
           D Y +              +     + +   +      ++   I    + F    F + G
Sbjct: 225 DPYLRNQANATSRWPLAFWTSTQGAEALPTSRDRGFWIEEGWVIDRGDRLFPVERFSMVG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                N L+A       GI++  + E +     +  R E V T      I    A   ++
Sbjct: 285 NHNQQNLLMAVAAARLAGIEAEAIAEAMANFPGIAHRLERVATWQGIELINDSKATNYDA 344

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKI 428
             + L+ +          +   GG+  QG       +    A   ++      S  P   
Sbjct: 345 AWVGLQAVPG------PTILIAGGEAKQGDDQAWLDLIQAKARAVLLI----GSAAPLFA 394

Query: 429 RAEIIHGIPGFIEKG---NRIEAIRTAIEMLNKQDV--LVV 464
           R     G    +E     +R  A+  A+E+    D   +++
Sbjct: 395 RRLAEVGYSSPVENAETLDR--AVPRAVELAQSLDASHVLL 433


>gi|330985611|gb|EGH83714.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 434

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 108/374 (28%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RPAPRVVTVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY--------LSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHID 218
              ++          +     +   A+    +Q RLD + L           NL      
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADFA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFI 277
              +        +    E +  E   I  A         +       +   +G       
Sbjct: 158 LVTSIGVDHAEYLGNTRESVAFEKAGIFRAGCPALCGDPEPPEPLLAKARELGCPLLMRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +    +         G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGKDSWDWRGVAHGEQVELRGLPLLDLPMQNAALALQAFALLGYPLQTDAVGQV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +    + +G R+ +  D  H  ++ + + + + R    G+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVSWQGKRLNLLLDVGHNPHAAQFLEQCLARQPVVGKRRAVFGLLND 337

Query: 394 RD-QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D +G    +  +  + A   + T  +  +E+       +   +  +        A+   
Sbjct: 338 KDLEGVVAHLVPVIDEWAVAPLPTSRSRPAEELHSALQNLGACVTSYQSV---ALALEAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|323190227|gb|EFZ75503.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli RN587/1]
          Length = 491

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 122/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           + ++ +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRLDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|320540407|ref|ZP_08040057.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
 gi|320029338|gb|EFW11367.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
          Length = 439

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 129/398 (32%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IVVS   +L   + +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVVSPGVALATPALSAAADAGVEIVGDVE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V Q+ + +G +    G                   + L         Q      +
Sbjct: 118 TVTTLVGQMAKAAGWAVGIGGNIGLP-------------ALSL-------LRQECQLYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +                +       ++ 
Sbjct: 158 ELSSFQLET--THSLRTAAATMLNVTEDHMDRYP---FGLQQYRVAKLRVYENAGVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD  +  V           + VG         +           +  E         L 
Sbjct: 213 TDDTLTLPVRGTDARCVSFGVDVGDYHLNCQQGETWL-------RVRGEKVLNTREMKLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+ I  A  L+ L     +P RF++V   +    I    A    
Sbjct: 266 GCHNYTNALAALALADAVNIPRASSLKALTTFTGLPHRFQWVWECNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E     ++ +    ++ +   G  +     P+          +  +  DN R     +
Sbjct: 326 STEA---ALKGLQVEGMLHLLLGGDGKSADFSPL----------VRYLQGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A+++   P          +A+R     +   D++++
Sbjct: 373 DGAQLVQLRPAVATLTETLEQAMRDIACRVQPGDMVLL 410


>gi|183602452|ref|ZP_02963818.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241191194|ref|YP_002968588.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196600|ref|YP_002970155.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218371|gb|EDT89016.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249586|gb|ACS46526.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251154|gb|ACS48093.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794187|gb|ADG33722.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 521

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 57/401 (14%), Positives = 120/401 (29%), Gaps = 54/401 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIY 169
              I+ +TGT+GK S A   + IC+  G+ +                    RL+    + 
Sbjct: 45  SFRIIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEHVSERIVIDGQRLSDDDFVE 104

Query: 170 LAKALSY-------------------------LSSQGVTHVSVEASSHGLDQH-RLDGIK 203
           L   +                           ++        V+ +   +    R D   
Sbjct: 105 LWNQVKDFVALVDKKMDEEGAPRMSFFEVLTAMAIWKFADAPVDVAIVEVGMGGRWDATN 164

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           ++      +G   +D+            +    ++     AII      S+ +      A
Sbjct: 165 VLDADAAVIGPIDMDHMAWLGDTVEQIAQEKVGIIKPGCTAIIGRQPHESEVMPIIEQAA 224

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++   G    +         Q VT+ +    +  +          +  +AA    
Sbjct: 225 AENHATIIRDGYEAEVVSRMPAVGGQMVTLRMPNGTYADVPVDKFGEHQAHNALAALCAC 284

Query: 324 AIGIDSA-----LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            + I  +      ++        +PGR E V ++     I +D  H  N+ E +   I  
Sbjct: 285 EVVIPVSGALDGDLVAEALSSVKIPGRIEQVRSSPT---IIIDGGHNVNAAEALRAAIEE 341

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGI 436
                +++ V     D+          +   +    IVT+++      P    AEI  G+
Sbjct: 342 NYDFTQLVAVVAMMEDKQVE---EYLGVLEPIVSELIVTENSWTDRVMPADKLAEIARGV 398

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
                     +  +AI+ A+  ++  D         +++ G
Sbjct: 399 FGPERVTCIPSLPDAIQEAVNRVDADDELGVGYGHGVLICG 439


>gi|161507884|ref|YP_001577848.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           DPC 4571]
 gi|172048345|sp|A8YWG1|MURC_LACH4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160348873|gb|ABX27547.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DPC
           4571]
          Length = 437

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                         + + +KK         +    +  +F+      G+  + NA     
Sbjct: 222 IPKYTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEFEIHL--FGDHSILNATAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + E +        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIREGMLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|86739915|ref|YP_480315.1| FolC bifunctional protein [Frankia sp. CcI3]
 gi|86566777|gb|ABD10586.1| FolC bifunctional protein [Frankia sp. CcI3]
          Length = 445

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 6/126 (4%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
           PGR E V          +D AH   +   + +++R    GR   V   G  R       +
Sbjct: 302 PGRLEIVRAQPL---CVLDGAHNPAAGAALARSLREEFPGREWTVV-YGALRGHDYEGTL 357

Query: 403 GKIALDLADIAIVTDD-NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI-EMLNKQD 460
            ++        I  +  +PR+   E +               +   A+R A+ +      
Sbjct: 358 AELRHQPISSLIACEPASPRAIRAEHLVCAARARAMPAHAASDVGCAVRHALRDAAGPGG 417

Query: 461 VLVVAG 466
            ++V G
Sbjct: 418 AILVTG 423


>gi|74310710|ref|YP_309129.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sonnei Ss046]
 gi|109892739|sp|Q3Z5R8|MURC_SHISS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|73854187|gb|AAZ86894.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella sonnei Ss046]
 gi|323165974|gb|EFZ51754.1| UDP-N-acetylmuramate--alanine ligase [Shigella sonnei 53G]
          Length = 491

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 122/416 (29%), Gaps = 63/416 (15%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNK----QDVLVVAGKGH 469
           P        +   I   G    I   +  +      EML       D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQ----VAEMLAPVLIGNDLILVQGAGN 467


>gi|82542695|ref|YP_406642.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii Sb227]
 gi|187730669|ref|YP_001878901.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii CDC
           3083-94]
 gi|109892737|sp|Q326E4|MURC_SHIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620431|sp|B2U296|MURC_SHIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81244106|gb|ABB64814.1| UDP-N-acetyl-muramate:alanine ligase [Shigella boydii Sb227]
 gi|187427661|gb|ACD06935.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii CDC 3083-94]
 gi|320183622|gb|EFW58465.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098948|gb|EGJ03899.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 3594-74]
          Length = 491

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFLGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|237712814|ref|ZP_04543295.1| folylpolyglutamate synthase [Bacteroides sp. D1]
 gi|237718401|ref|ZP_04548882.1| folylpolyglutamate synthase [Bacteroides sp. 2_2_4]
 gi|262408829|ref|ZP_06085374.1| folylpolyglutamate synthase [Bacteroides sp. 2_1_22]
 gi|299149057|ref|ZP_07042119.1| tetrahydrofolate synthase [Bacteroides sp. 3_1_23]
 gi|229447142|gb|EEO52933.1| folylpolyglutamate synthase [Bacteroides sp. D1]
 gi|229452334|gb|EEO58125.1| folylpolyglutamate synthase [Bacteroides sp. 2_2_4]
 gi|262353040|gb|EEZ02135.1| folylpolyglutamate synthase [Bacteroides sp. 2_1_22]
 gi|298513818|gb|EFI37705.1| tetrahydrofolate synthase [Bacteroides sp. 3_1_23]
          Length = 496

 Score = 43.3 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 67/240 (27%), Gaps = 11/240 (4%)

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +   +    +I A D  S+E   +   A   +           +        K    
Sbjct: 244 PMMDNTIQSMHEMIEAMDEQSEEEANQMRQALLMLDLSDSLRTLDQILDKRKDAIKIHNE 303

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPGRFEFVG 350
           +      F  L        ++  L A      +  +         L  +  + G      
Sbjct: 304 M-FPFGLFTELSGAYQFENMFTILKALATLTRLNYNIRSQDYRAGLANVCQLTGLMGRWQ 362

Query: 351 TNSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIA 406
                  I  D  H  + +E I      I       I +VFG   D+D +G    + K A
Sbjct: 363 KVHSYPDIICDTGHNVDGIEYIHVQLNAIHKTFDQEIHIVFGMVNDKDIRGVLRALPKYA 422

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 A V    P +E         + G           EA++ A +    +D++ V G
Sbjct: 423 TYYFTKASVKRALPENELLALAEEAGLKGTTYPTVV----EAVQAAKKNCPPKDLIFVGG 478


>gi|109947188|ref|YP_664416.1| hypothetical protein Hac_0606 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714409|emb|CAJ99417.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 335

 Score = 43.3 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 39  HIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNT 98
            +Q G +F A     +D H FIP+A+  GA  I+ +  Y L D       +   + + + 
Sbjct: 34  KVQKGSLFAA-----KD-HAFIPKALELGAYGILYTGEYPLSDR------DVAWIKLKDI 81

Query: 99  RKFLSLF 105
              L+  
Sbjct: 82  EHSLNHL 88


>gi|194335575|ref|YP_002017369.1| FolC bifunctional protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308052|gb|ACF42752.1| FolC bifunctional protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 422

 Score = 43.3 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT--SGRIIVVFGCGGDRDQGKR 399
              R E +G       I +D +H  + +   +  + +      RI VV G   D+D   R
Sbjct: 288 YRARLEQIGM---NPAILLDVSHNPDGMRETVNTLLSFRKKYRRISVVLGLASDKDA--R 342

Query: 400 PIMGKIALDLADIAIVTDDNPRS---EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
            ++ ++        +V   + RS   E    I  E   G    +    R E +   +   
Sbjct: 343 AVIRELHRLECSFVLVNIPSERSVSAEVLSSICQE--EGSAATVCATGR-EGLAYLLSRA 399

Query: 457 NKQDVLVVAG 466
              D+++V G
Sbjct: 400 GADDLILVTG 409


>gi|227878134|ref|ZP_03996113.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           JV-V01]
 gi|256850137|ref|ZP_05555567.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-1A-US]
 gi|262047700|ref|ZP_06020653.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-3A-US]
 gi|227862261|gb|EEJ69801.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus crispatus
           JV-V01]
 gi|256713109|gb|EEU28100.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-1A-US]
 gi|260571985|gb|EEX28552.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus crispatus
           MV-3A-US]
          Length = 437

 Score = 43.3 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                         + + +KK         +    +  +F     L G+  + N+     
Sbjct: 222 IPKYTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNSTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + E +        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIREGMLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|206561753|ref|YP_002232518.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia J2315]
 gi|198037795|emb|CAR53739.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia J2315]
          Length = 461

 Score = 43.3 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 105/356 (29%), Gaps = 24/356 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 103 KWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +       NL  DH D      A       L
Sbjct: 163 DTAFFDKRSKFV---------------HYRPRTAVLNNLEFDHADIFPDLAAIETQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +            DA  + + +   +   R    G          V         + 
Sbjct: 208 VRTVPGVGRIVTNGRSDALERVLARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSH 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +  +     G+    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 268 AERVGEVAWQVQ--GDHNRMNALAAIAAARHVGVPPAQAAVSLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLAD 411
            G  +Y D+AH   +++  +  +R     +   +      R    K  +M  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +     P   D     +   +           +    ++  +E     D ++V
Sbjct: 385 ADLVFGYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLV 440


>gi|94311991|ref|YP_585201.1| UDP-N-acetylmuramate [Cupriavidus metallidurans CH34]
 gi|93355843|gb|ABF09932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 477

 Score = 43.3 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 104/359 (28%), Gaps = 32/359 (8%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
           +  LAV GT GK++  S +  I + +G +   +       +F    RLT      +    
Sbjct: 121 KWTLAVAGTHGKTTTTSMLAWILEDAGYNPGFL-VGGVPQNFGISARLTESDFFVIEADE 179

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
              +           S     + R   +  +     ++  D                   
Sbjct: 180 YDTAFFDKR------SKFVHYRPRTAILNNLEYDHADIFPDLTAIETQFHHLVRTVPGEG 233

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
             ++  + PA+    +      +++                              Q T+ 
Sbjct: 234 RLVVNGQEPALARVLERGCWSEVEQFGVGDWSETDPKTAAPEGKDAFDIWFREALQGTLV 293

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            + +                 +             A  +E L +   V  R E  G    
Sbjct: 294 WDLQGTHNRLNAIAAIAAARHVGV---------PPAQAIESLGRFSNVKRRMEVRGVAG- 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGK---IALDLA 410
           G  +Y D+AH   +++  +  +R  +   RI+ V     +    K  +M      +L  A
Sbjct: 344 GVTVYDDFAHHPTAIQTTVDGLRRRVGDARILAVLEPRSN--TMKLGVMAAQLPASLREA 401

Query: 411 DIAIVTDDNPRSEDP-----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           D+       P  +D       +  A +      F + G  +EA+R A       D ++V
Sbjct: 402 DLV-FGYGAPSGKDALGWNLAEALAPLGEKAAAFQDLGTLVEAVRAA---AQPGDQVLV 456


>gi|256821827|ref|YP_003145790.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
 gi|256795366|gb|ACV26022.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
          Length = 451

 Score = 43.3 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 116/356 (32%), Gaps = 29/356 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H + +LA  GT GK++ AS +  I Q               +          P    L+ 
Sbjct: 101 HDKWVLAAAGTHGKTTTASMLAWILQ-------------YANLEPGFLIGGVPENFGLSA 147

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
            ++      V     + +     + +    +       NL  DH D     +A    +  
Sbjct: 148 RVTESPFFVVEADEYDTAFFD-KRSKFVHYRPRTLIMNNLEYDHADIFPNLEAIK-TQFH 205

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
               ++P     I   DDA  + V++R    G          +     K+          
Sbjct: 206 HLLRIVPGNGLVIYPKDDANLQNVVER----GLWSDKELIGDEHGWQYKLLEEDGSHFEV 261

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +    K  +  +PL G   V NAL A       G+ ++   + L +   V  R E  G  
Sbjct: 262 LFAGQKQGEVNWPLIGLHNVNNALAAIAAARHAGVPASHCCDALAEFKNVKRRMELKG-E 320

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGK----IALD 408
           + G ++Y D+AH   +++  L   R     +   V      R    R  + K     +L 
Sbjct: 321 ASGVKVYDDFAHHPTAVKTTLDGFRAKVGEQR--VIAIVDLRSATMRSGIHKDTLLASLK 378

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD  I+    P   D +    ++           +    + +  EM+   D ++V
Sbjct: 379 GADCVII--HKPAEFDWQFPIEQVNQ-FDNLKILPDVDSILNSLKEMVQSGDNILV 431


>gi|167759907|ref|ZP_02432034.1| hypothetical protein CLOSCI_02271 [Clostridium scindens ATCC 35704]
 gi|167662526|gb|EDS06656.1| hypothetical protein CLOSCI_02271 [Clostridium scindens ATCC 35704]
          Length = 446

 Score = 43.3 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +      + K A         +      I       I   +             +     
Sbjct: 211 NQKACAVIRKTAEKMLAPCREISKNAYEIREVNWKYIAFSRANAYDKGVIYQVPICGCYQ 270

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
                 AL AA   +                    GR E V        + +D AH   +
Sbjct: 271 VMNAQIALEAAEYLLRDETIHKSRWVDAIGSMHWEGRMERVAP-----HLVIDGAHNPGA 325

Query: 369 LEMILKNIRTITSGR---IIVVFGCGGDRDQGKRPIMGKIALD--LADIAIVTDDNPRSE 423
           +E   ++++ + +      +++F    D+   K   M +       A   IVT+   +  
Sbjct: 326 VEAFAESVKALGADEGEGPVIIFSAVSDK---KYEQMIEYLCRNMNAKAYIVTEIEDKRR 382

Query: 424 DPEKIRAEIIHGI--PGFIEKGNRIEAIRTAI-EMLNKQDVLVV 464
            P +    +            G+  EA++ A  E ++  D+  +
Sbjct: 383 VPAEELERVFKKYTRKKVYRAGSLKEALQKAENERVDDGDIFCL 426


>gi|219683234|ref|YP_002469617.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|219620884|gb|ACL29041.1| folylpolyglutamate synthase [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 514

 Score = 43.3 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 57/401 (14%), Positives = 120/401 (29%), Gaps = 54/401 (13%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS----SFAQDNRLTTPSPIY 169
              I+ +TGT+GK S A   + IC+  G+ +                    RL+    + 
Sbjct: 38  SFRIIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEHVSERIVIDGQRLSDDDFVE 97

Query: 170 LAKALSY-------------------------LSSQGVTHVSVEASSHGLDQH-RLDGIK 203
           L   +                           ++        V+ +   +    R D   
Sbjct: 98  LWNQVKDFVALVDKKMDEEGAPRMSFFEVLTAMAIWKFADAPVDVAIVEVGMGGRWDATN 157

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
           ++      +G   +D+            +    ++     AII      S+ +      A
Sbjct: 158 VLDADAAVIGPIDMDHMAWLGDTVEQIAQEKVGIIKPGCTAIIGRQPHESEVMPIIEQAA 217

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCI 323
                ++   G    +         Q VT+ +    +  +          +  +AA    
Sbjct: 218 AENHATIIRDGYEAEVVSRMPAVGGQMVTLRMPNGTYADVPVDKFGEHQAHNALAALCAC 277

Query: 324 AIGIDSA-----LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
            + I  +      ++        +PGR E V ++     I +D  H  N+ E +   I  
Sbjct: 278 EVVIPVSGALDGDLVAEALSSVKIPGRIEQVRSSPT---IIIDGGHNVNAAEALRAAIEE 334

Query: 379 -ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-PRSEDPEKIRAEIIHGI 436
                +++ V     D+          +   +    IVT+++      P    AEI  G+
Sbjct: 335 NYDFTQLVAVVAMMEDKQVE---EYLGVLEPIVSELIVTENSWTDRVMPADKLAEIARGV 391

Query: 437 ---PGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
                     +  +AI+ A+  ++  D         +++ G
Sbjct: 392 FGPERVTCIPSLPDAIQEAVNRVDADDELGVGYGHGVLICG 432


>gi|163754138|ref|ZP_02161261.1| putative folylpolyglutamate synthase [Kordia algicida OT-1]
 gi|161326352|gb|EDP97678.1| putative folylpolyglutamate synthase [Kordia algicida OT-1]
          Length = 406

 Score = 43.3 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 115/374 (30%), Gaps = 14/374 (3%)

Query: 99  RKFLSLFASRLYG-KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            K +S FA  L   ++    + V GT+GK S +  +  I Q +G                
Sbjct: 32  LKKISNFAKHLNSPENTFKSIHVAGTNGKGSTSHMIASILQEAGYKVGLYTSPHLKDYRE 91

Query: 158 Q---DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS-HGLDQHRLDGIKLIAGSFTNLG 213
           +   +  + T          +    +       E +     D      + +        G
Sbjct: 92  RIRVNGEMITKEATINFVKNNKAFIEKNALSFFEITVGMAFDYFAKQKVAIAVVEVGMGG 151

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQ 273
           R       T +      +      +  +  A+       +  + K             + 
Sbjct: 152 RLDSTNIITPEVSVITNIGFDHVAILGD--ALAKIASEKAGIIKKNVPVVIGEYHKETFP 209

Query: 274 GKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVL 333
                  ++ A     + TI         L     +    +A+ A  L  +  I+   + 
Sbjct: 210 VFVKQAAEMNAELYLAEKTIQENYTT--DLLGNYQQKNYKSAVQAIRLLKSFQIEEKHIQ 267

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           + L  + +           +   ++  D AH +  L + ++ +++ +  ++ +VFG   D
Sbjct: 268 KGLSNVVINTKLQGRWQIINLFPKVICDTAHNTEGLTLTMEQLQSESFQKLHIVFGVVND 327

Query: 394 RDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           ++  +  P+  K A         +    R  DP K++ +            +  EA   A
Sbjct: 328 KNLDQILPLFPKKAHYY----FCSPKINRGLDPNKLQQQAKECRLIGNVYDSVSEAYTVA 383

Query: 453 IEMLNKQDVLVVAG 466
           +     +DV+ V G
Sbjct: 384 MSKATTKDVIYVGG 397


>gi|108800226|ref|YP_640423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. MCS]
 gi|119869354|ref|YP_939306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. KMS]
 gi|126435849|ref|YP_001071540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium sp. JLS]
 gi|108770645|gb|ABG09367.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. MCS]
 gi|119695443|gb|ABL92516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. KMS]
 gi|126235649|gb|ABN99049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium sp. JLS]
          Length = 497

 Score = 43.3 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 116/362 (32%), Gaps = 31/362 (8%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    V  +    G      G  +                      L 
Sbjct: 129 RIVGITGSSGKTSTKDLVAAVLAPLGEVIAPPGSFNNELGHPW-------------TVLR 175

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
              S     + + A   G                 N+G  H+    +++A   A      
Sbjct: 176 ADRSTDFLVLEMSARHPGNIAALAAIAPPSIAVVLNVGTAHLGEFGSREAIA-ATKSELP 234

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P+    I+ ADD+    + +       RV        +     +  +    + T+  
Sbjct: 235 QAVPESGVVILNADDSAVAAMAEVTAARVVRVSREPGADIWADAVTLDELARP-RFTLHA 293

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKL-HVVPGRFEFVGTNSR 354
            G +      + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 294 AGGEVPVNLAVHGDHQVSNALCAAAVALECGATLDQVAAALAGAGPVSRHRMQVTTREDG 353

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSG-----RIIVVFGCG---GDRDQGKRPIMGKIA 406
              +   Y    +S+   LK +  ++ G     R   V G     GD    +   +G++A
Sbjct: 354 VTVVNDAYNANPDSMRAGLKALAWMSRGGAAKRRSWAVLGEMAELGDDSISEHDSIGRLA 413

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGI--PGFIEKGNRIEAIRTAIEMLNKQDVL 462
           + L  + + +V     RS      +  ++ G          +   A+    + L   DV+
Sbjct: 414 VRLDVSRLVVVGTG--RSASAMH-QGAVMEGSWGAEATRVDDADAALALLSDELQPGDVV 470

Query: 463 VV 464
           +V
Sbjct: 471 LV 472


>gi|257456474|ref|ZP_05621670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           vincentii ATCC 35580]
 gi|257446134|gb|EEV21181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           vincentii ATCC 35580]
          Length = 481

 Score = 43.3 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 101/333 (30%), Gaps = 59/333 (17%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS--------------------- 103
             GA+ +VV+   + ++ + ++    P     N R  L                      
Sbjct: 34  EHGAKEVVVTDMKTEEELAPSVAELKPY---PNVRFALGGHNIEDFRTADMVIKNPGVKS 90

Query: 104 ----LFASR---------LYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPT 150
                 A+                  +LAVTG+ GKSS  S +    Q+ G+ +F  G  
Sbjct: 91  EGNPYLAAAHCIETDISIFLKLSSAPVLAVTGSKGKSSTVSALYYGLQQCGIPAFLGGNI 150

Query: 151 STIS-SFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL-DQHRLDGIKLIAGS 208
           +    +F  + R  TP  + L                   SS  L D      +K     
Sbjct: 151 TVSPLTFLTETRADTPVVLEL-------------------SSWQLGDLAHCPQLKPKIAL 191

Query: 209 FTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVL 268
            T++  DH +++ + + Y  A  ++      K    I   DD + K   +          
Sbjct: 192 ITHIMPDHQNWYGSMERYV-ADKKIIYRNQDKNDYTICNYDDGWGKIFAQETAGQVFWYS 250

Query: 269 SVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGID 328
           +       +          + ++    +         +PG     N + A+      G++
Sbjct: 251 AHPLPPHLLGAWIAPDGSARIRLKAGDDRLLLPPKIAVPGAALKQNVMAASLALALYGVE 310

Query: 329 SALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVD 361
              + + ++    +P R EF     +       
Sbjct: 311 PKKIPDAMKTYGGIPHRLEFFYETEQFKFYNDS 343


>gi|60117291|gb|AAX14420.1| UDP-N-acetylmuramate--alanine ligase [Wolbachia endosymbiont of
           Drosophila mojavensis]
          Length = 185

 Score = 43.3 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 10/168 (5%)

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
             +V NAL A  + I +GI  A + + L +   V  RF  +     G ++  DYAH  N 
Sbjct: 1   MHKVSNALAAISVAIKLGISDAEIKKGLLEFQGVARRFSLIADIK-GVKLIEDYAHHPNE 59

Query: 369 LEMILKNIRTITSGRIIVVFGCGG-DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-- 425
           +   L   R+IT G++I +       R +       +I   + D  I+T  +P  + P  
Sbjct: 60  IYATLTAARSITKGKVIGIIEPLRFARIRNFFDEFIRI-FMMFDYVILTPVHPPEDKPIP 118

Query: 426 ----EKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-NKQDVLVVAGKG 468
               + I+  +I       +  N    I   I    +  D+++  G G
Sbjct: 119 GCGIDDIQKALISNGFNNTKIMNDALLISHFISDSTSPSDIVLFIGAG 166


>gi|71737843|ref|YP_273902.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71558396|gb|AAZ37607.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 434

 Score = 43.3 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 107/374 (28%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +           L 
Sbjct: 39  RLAPRVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY--------LSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHID 218
              ++          +     +   A+    +Q RLD + L           NL      
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADFA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFI 277
              +        +    E +  E   I  A         +       +   +G       
Sbjct: 158 LVTSIGVDHAEYLGNTRESVAFEKAGIFRAGCPALCGDPEPPEPLLAKARELGCPLLMRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +              G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGKESWDWRGVAHGEQVELRGLPLLDLPMQNAALALQAFALLGYPLQTDAVGQV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +    + +G R+ +  D  H  ++ + + + + R    G+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVSWQGKRLNLLLDVGHNPHAAQFLEQCLARQTFVGKRRAVFGLLND 337

Query: 394 RD-QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D +G    +  +  + A   + T  +  +E+       +   +  +        A+   
Sbjct: 338 KDLEGVVAHLVSVIDEWAVAPLPTSRSRPAEELHSALQNLGACVTSYQSV---ALALEAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|313206530|ref|YP_004045707.1| udp-n-acetylmuramate/alanine ligase [Riemerella anatipestifer DSM
           15868]
 gi|312445846|gb|ADQ82201.1| UDP-N-acetylmuramate/alanine ligase [Riemerella anatipestifer DSM
           15868]
 gi|315023529|gb|EFT36533.1| UDP-N-acetylmuramate--L-alanine ligase [Riemerella anatipestifer
           RA-YM]
 gi|325336021|gb|ADZ12295.1| UDP-N-acetylmuramate-alanine ligase [Riemerella anatipestifer
           RA-GD]
          Length = 452

 Score = 43.3 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357
           +   F + +PG   V NA  A  +   +G+    + E L K   +  R+        G  
Sbjct: 263 ETQRFSWEIPGIHNVENATAALAVLHKMGVSLEDLKEALSKFRGIKRRY-TKHIFPNGKI 321

Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIV 415
              DYAH    L  ++ +IRT    + ++V        R +       K      D  ++
Sbjct: 322 YIDDYAHHPTELNAVIGSIRTFYPDKKLLVVFQPHLFSRTRDFADDFAKSLSQ-GDELML 380

Query: 416 TDDNPRSE---DPEKIRAE 431
            D  P  E   D E I ++
Sbjct: 381 LDIYPARELQKDFEGISSD 399


>gi|311086530|gb|ADP66611.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 43.3 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 152/484 (31%), Gaps = 83/484 (17%)

Query: 4   QDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
            DL+      +LIN  +   +Q  E+ I  V                         FI  
Sbjct: 17  SDLLESLMIKKLINLGATIYLQHSEKNIKNV------------------------DFI-- 50

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            I     AI    + + ++  A  + N PIL     R  +            +  +A++G
Sbjct: 51  -IKS--SAI----SSNNKEILAAKKRNIPIL----LRAEMIEILMSF-----KKGIAISG 94

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S +  I   SGL    I     I S     +L + S        S  S    
Sbjct: 95  THGKTTTTSMIADIFIDSGLDPTVI-NGGLIKSINSYAKLGSSSYFITEADESDASFLY- 152

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +       TN+  DHID++            +F + +    
Sbjct: 153 -------------------LNPNIIIVTNIESDHIDHYDNSFKKLKQTFLIFLKKITLYG 193

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+  D+    +++                   I L K         + +    K  + 
Sbjct: 194 TAIVCIDNNAICDILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNN-KKLNI 252

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSR 354
           +  +PG+    NA  A  L I  GI++ L++  L+       RFEF+G            
Sbjct: 253 ILNIPGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQGFDKRA 312

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DY H    L   +K IR     + +++        R         +      D+
Sbjct: 313 NCMLIDDYGHHPTELSETIKTIRISWPNKNLIMIFQPHRYTRTYNLYHDFVQTLSQ-VDV 371

Query: 413 AIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465
            ++      +E      D   +  +I      ++    N    + T I+ L   D++++ 
Sbjct: 372 LLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQ 431

Query: 466 GKGH 469
           G G+
Sbjct: 432 GAGN 435


>gi|260913001|ref|ZP_05919486.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
 gi|260632991|gb|EEX51157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
          Length = 434

 Score = 43.3 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 61/395 (15%), Positives = 124/395 (31%), Gaps = 56/395 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IVVS   +++        +  + V+ +              +  + I+A+TG++GKS+V
Sbjct: 69  LIVVSPGIAIKTPEIQTALSAGVKVIGDIE--------LFCREASKPIIAITGSNGKSTV 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ + SGL     G                   + L +    L         +E 
Sbjct: 121 TTLVYEMAKASGLKVGMGGNIGIP-------------ALSLLEQNYDL-------YVLEL 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +K  + +  N+  DH+D +   + Y  AK+R++         AI+  +
Sbjct: 161 SSFQLET--TYSLKATSATVLNVTEDHMDRYIDLEDYRQAKLRIY----HNAKTAIVNTE 214

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D     +                   ++  +        +   I    +       L G 
Sbjct: 215 DP----LTTIDSLKSAVSFGEENSDYWLKTENGKQYFMAKNEMILPCDEI-----KLVGR 265

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
               N L A  L  A  +    +   L +   +  RF+     +    I    A    S 
Sbjct: 266 HNYMNVLAAIALAQAANVSLEGIRTALREFSGLDHRFQLAHFANGVYWINDSKATNVGST 325

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++   +G + ++ G  G ++     +   I            D           
Sbjct: 326 VAALTGLQ--VAGHLHLLLGGDG-KEADFSELSTLIQQPHIYCYCFGKDG---------- 372

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A++              +AI      L + D++++
Sbjct: 373 AQLAKLSQQSQLFDTMEQAINALRPNLKEGDMVLL 407


>gi|167622683|ref|YP_001672977.1| UDP-N-acetylmuramate [Shewanella halifaxensis HAW-EB4]
 gi|167352705|gb|ABZ75318.1| UDP-N-acetylmuramate [Shewanella halifaxensis HAW-EB4]
          Length = 461

 Score = 43.3 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 106/356 (29%), Gaps = 26/356 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
               +LAV+GT GK+S +S +  I +  G     +      +         +P  +  A 
Sbjct: 105 PQRWVLAVSGTHGKTSTSSMLAWILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFVVEAD 164

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
                            S+    + +    +       NL  DH D     +A    +  
Sbjct: 165 EYD--------------SAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQR-QFN 209

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
                +  E   I  AD    ++V++    +      +    +  H   +    +K +V 
Sbjct: 210 HVIRTVAGEGKIIWPADAVSVQQVIEMGCWSEQETYHLAPSSQGWHAVNLTQDGHKFEVF 269

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
              E +     + L G+  + NA++A      +G+     +  L +      R E +   
Sbjct: 270 FDGESQ-GVLDWQLIGQHNIENAVMAIAAARHVGVKPDAAIAALTQFAPPKRRMELL-DT 327

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
             G  +Y D+AH   ++   L  +R       + V                 +A  LA  
Sbjct: 328 VNGIEVYDDFAHHPTAITTSLSGMRARVGEAKVTVILEPRSNTMKSGVHKDTLANSLA-- 385

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPG----FIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 N        I  ++   +           +  E +          D ++V
Sbjct: 386 ---LASNAYLYQAGNIDWDMRSAMSSASIPVEVLYDIDEIVDKVAAQACSTDTIIV 438


>gi|319782846|ref|YP_004142322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168734|gb|ADV12272.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 466

 Score = 43.3 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 84/422 (19%), Positives = 138/422 (32%), Gaps = 62/422 (14%)

Query: 60  IPQAIAQGA-----EAIVVSSAYS----LQDFSATIRSNTPILVVDNTRKFLSLFASRLY 110
           I  A  +GA      A V+S           ++  +   + + +V +   F      R+ 
Sbjct: 53  IATADLRGADWAKFSAFVLSPGVPLTHPKPHWTVELARGSGVEIVGDIELFCRE---RML 109

Query: 111 GKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYL 170
                  +A+TGT+GKS+  +    I + +G  +   G               T  P   
Sbjct: 110 SAPTAPFIAITGTNGKSTTTALTAHILKAAGRDAQMGGNIGRAVM--------TLDPPE- 160

Query: 171 AKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAK 230
                        H  VE SS+ +D      I   AG   NL  DH+D H T Q Y    
Sbjct: 161 ----------PDRHYVVECSSYQIDL--APSINPTAGILLNLTPDHLDRHGTMQHY---- 204

Query: 231 MRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
             + E L+     AI+  DD++  ++ +R   AG  V+ +  +            +  + 
Sbjct: 205 AAIKERLVAGSETAIVGIDDSWCAQIAERLERAGRHVIRISKRLPLTDGYFADGSNLMEA 264

Query: 291 VTISVEGKDFDFLFPLPG-EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFV 349
           V        F         +    NAL A   C+ IG++   +   LE    +  R E V
Sbjct: 265 VHGRYSRVAFLEGIGSLRGQHNAQNALAAVAACLKIGLELGEIQSGLESFPGLAHRMEQV 324

Query: 350 GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG---KIA 406
           G       I        +           ++S   I     G  ++ G  P+ G   +IA
Sbjct: 325 GRKDHVLFI------NDSKATNADAAAPALSSFARIYWIAGGLPKEGGIEPLRGFFPRIA 378

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD----VL 462
                  I        E      A +   +P +   G    A+  A     K D    V+
Sbjct: 379 KAY---LI-------GEAAPAFSATLGEAVP-YEISGTLAAAVEHAAHDAAKDDSGEAVV 427

Query: 463 VV 464
           ++
Sbjct: 428 LL 429


>gi|289623901|ref|ZP_06456855.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289649367|ref|ZP_06480710.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869249|gb|EGH03958.1| folylpolyglutamate synthase/dihydrofolate synthase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 434

 Score = 43.3 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 107/374 (28%), Gaps = 23/374 (6%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           +    ++ VTGT+GK S  +FV  + Q   L          I    +           L 
Sbjct: 39  RPAPRVITVTGTNGKGSTCAFVAALLQAQDLKVGVYSSPHLIRYNERVKVQGV-EATDLE 97

Query: 172 KALSY--------LSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHID 218
              ++          +     +   A+    +Q RLD + L           NL      
Sbjct: 98  LCDAFAAVEAARGDVTLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADFA 157

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG-KFI 277
              +        +    E +  E   I  A         +       +   +G       
Sbjct: 158 LVTSIGVDHAEYLGNTRESVAFEKAGIFRAGCPALCGDPEPPEPLLAKARELGCPLLMRG 217

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
               +    +         G+  +       +  + NA +A      +G           
Sbjct: 218 RDFDLSIGKDSWDWRGVAHGEQVELRGLPLLDLPMQNAALALQAFALLGYPLQTDAVGQV 277

Query: 338 KLHVV-PGRFEFVGTNSRGGRIYV--DYAHTSNSLEMILKNI-RTITSGRIIVVFGCGGD 393
                  GR +    + +G R+ +  D  H  ++ + + + + R    G+   VFG   D
Sbjct: 278 LAQTRLAGRLDRRTVSWQGKRLNLLLDVGHNPHAAQFLEQCLARQPVVGKRRAVFGLLND 337

Query: 394 RD-QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D +G    +  +  + A   + T  +  +E+       +   +  +        A+   
Sbjct: 338 KDLEGVVAHLVSVIDEWAVAPLPTSRSRPAEELHSALQNLGACVTSYQSV---ALALEAQ 394

Query: 453 IEMLNKQDVLVVAG 466
                  D +++ G
Sbjct: 395 CAHATPDDEILLFG 408


>gi|213646586|ref|ZP_03376639.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 479

 Score = 43.3 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 119/412 (28%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +     D       PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQGMPDLHVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGN 467


>gi|238650901|ref|YP_002916757.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
 gi|238624999|gb|ACR47705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rickettsia
           peacockii str. Rustic]
          Length = 500

 Score = 43.3 bits (100), Expect = 0.094,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 112/406 (27%), Gaps = 41/406 (10%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVA 130
           IV+S    L      I  +  I +  +     +              +A+TGT+GKS+  
Sbjct: 67  IVLSPGIPLTHEIVNIAKSFNIPITSDIDLLFAK-------SKNLKFIAITGTNGKSTTT 119

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
           + +  I   SGL     G     +  A+ ++      +   +     +      V +  +
Sbjct: 120 ALISHILNSSGLDYPVAGNIGVSALQAKASKDGYVLELSSFQLDLVKTFTAKIAVLLNIT 179

Query: 191 SHGLDQHRLDGIK----------LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPK 240
              LD+H+               +   S+  +  D+    +        +          
Sbjct: 180 PDHLDRHQDMPCYIAAKSKIFDRMDQESYAVINIDNDYCREVFIKLQQEQRIKLIPFSVT 239

Query: 241 E----------SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQ 290
           +                  D  S E+   + +                  +      +  
Sbjct: 240 QILENGISVVDDKISANFFDDISFELQHNSESFRQDEFQGEPAEPECIKIREHRQDLQNS 299

Query: 291 VTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG 350
           +  S       F   L G     N   +  +   IG++   +LE +     +P R +++G
Sbjct: 300 LVSSFMHYAVPFNKNLQGIHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYIG 359

Query: 351 TNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA 410
           + +         A  + S    +K +  I     +          +  +P   +I     
Sbjct: 360 SINNISFYNDSKATNAISAVQSIKALDNIYW---LAGGIPKEGGIEEIKPYFSQIKKAYF 416

Query: 411 DIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
                          ++I A     I  F+   N  +A   A +  
Sbjct: 417 -----------YGQAKEIFANTAKNIVDFVICDNLEQAFDLAYKDA 451


>gi|260103187|ref|ZP_05753424.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DSM
           20075]
 gi|260083012|gb|EEW67132.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus helveticus DSM
           20075]
 gi|328464729|gb|EGF36059.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus helveticus
           MTCC 5463]
          Length = 437

 Score = 43.3 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSA----ADQTKKALFVWGDDKRLQSLKTD 221

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
                         + + +KK         +    +  +F     L G+  + NA     
Sbjct: 222 IPKYTYGFKDTDDFQAVDIKKSTTGSKFHVLAHGKDLGEF--EIHLFGDHSILNATAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + E +        RF           +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIREGMLTFKGAKRRFSEKDFG--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PDKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|293374534|ref|ZP_06620856.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sanguinis
           PC909]
 gi|292646913|gb|EFF64901.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sanguinis
           PC909]
          Length = 437

 Score = 43.3 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 74/226 (32%), Gaps = 15/226 (6%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q      +      TN+  DH DY        +A      +        I   DD   K+
Sbjct: 156 QRHFLAYRPDYAIITNIEHDHPDYFTDIDDVLDAFNVFSNQTKKM---VIACGDDPEVKK 212

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--LPGEFQVY 313
           +          +++ G +     + K      +          +F   F     G+  V 
Sbjct: 213 L-----QTSTNMMTYGLESHNNVVAKNILKTAEGTAFDVFINGEFYHTFNTLFFGDHMVL 267

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L    +C   G++++++ + L     V  RF           I  DYAH    +   L
Sbjct: 268 NSLAVITVCYLEGLEASIIDKDLRLFEGVKRRF--AQKKHHTQIIIDDYAHHPTEIAATL 325

Query: 374 KNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
           K +R       ++ VF      R         + +L+LAD   +TD
Sbjct: 326 KAVRQKFPDRNLVAVFQPHTFTRTAAFIDEFAQ-SLNLADHIYLTD 370


>gi|91216031|ref|ZP_01253000.1| UDP-N-acetylmuramate--L-alanine ligase [Psychroflexus torquis ATCC
           700755]
 gi|91186008|gb|EAS72382.1| UDP-N-acetylmuramate--L-alanine ligase [Psychroflexus torquis ATCC
           700755]
          Length = 448

 Score = 43.3 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 63/206 (30%), Gaps = 15/206 (7%)

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                  ++ +   +   +     +     D  F LPG   ++NA  A  L I      A
Sbjct: 235 NHSADYSIQHINIENGSYRFDFKSKDITLKDIQFSLPGHHNLFNAAAALCLAIDFKPSYA 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
                         R       S    +  DYAH    ++ + + I  +   +  VV   
Sbjct: 295 DRFAKALASFEGVQRRFNYVYKSDFLIVIDDYAHHPKEIDAVHQAISEMHPEKKSVVIFQ 354

Query: 391 GG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK------IRAEIIHGIPGFIEK 442
                R +       K      D   + D  P  E+P +      +   I H     I K
Sbjct: 355 PHLFSRTKDFADEFAKSLAQF-DEVNLLDIYPAREEPIEGITSKYLLELIDHPKKQLILK 413

Query: 443 GNRIEAIRTAIEMLNKQDVLVVAGKG 468
            +    I+ A      ++V+V+ G G
Sbjct: 414 NDIQNRIKNA-----SEEVIVLLGAG 434


>gi|330952710|gb|EGH52970.1| folylpolyglutamate synthetase [Pseudomonas syringae Cit 7]
          Length = 434

 Score = 43.3 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 100/373 (26%), Gaps = 21/373 (5%)

Query: 112 KHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT------- 164
           +    ++ VTGT+GK S  +FV  + Q  GL          I    +             
Sbjct: 39  RPARQVITVTGTNGKGSTCAFVAALLQAQGLKVGVYSSPHLIRYNERVEVQGVEVTDLEL 98

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLI-----AGSFTNLGRDHIDY 219
                  +A           +   A+    +Q RLD + L           NL    +  
Sbjct: 99  CDAFAAVEAARGDVPLTYFEMGTLAAFWLFEQARLDAVVLEVGLGGRLDAVNLVDADLAL 158

Query: 220 HQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK-FIH 278
             +        +    E +  E   I  A                 +   +G        
Sbjct: 159 VTSIGVDHAEYLGDTRESVAFEKAGIFRAGCPALCGDPAPPEPLLAKARELGCPLLLRGR 218

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
              +    +        +G+  +       +  + NA +A      +G            
Sbjct: 219 DFDLSIGEDSWDWRGVAQGEQIELRGLPLLDLPMQNAALALQAFALLGYPLQADATGKVL 278

Query: 339 LHVV-PGRFEFVGTNSRGG--RIYVDYAHTSNSLEM-ILKNIRTITSGRIIVVFGCGGDR 394
                 GR +       G    + +D  H  ++      +  R    G+   VFG   D+
Sbjct: 279 AETRLAGRLDRRVVRWHGKSLNLLLDVGHNPHAARFLGQRLARQPVGGKRRAVFGLLSDK 338

Query: 395 DQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI 453
           D       +  +  + A   + T  +  +E+ +     +   +  +        A+    
Sbjct: 339 DLDGVVAHLAPVIEEWAVAPLPTSRSRPAEELQTALQNLGARVTSYQSI---ALALEAQC 395

Query: 454 EMLNKQDVLVVAG 466
                 D +++ G
Sbjct: 396 AHATPDDEILLFG 408


>gi|325478549|gb|EGC81661.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score = 43.3 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 96/290 (33%), Gaps = 18/290 (6%)

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
             +++        E SS  L  H +   K    + TN+  DHID+H T   Y        
Sbjct: 25  WQMATNKDAVFVCELSSFQL--HDIKNYKPKIATITNISEDHIDWHGTFDDYI-ESKINI 81

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
            +   ++   II  +D   ++             S     + I LK        +++   
Sbjct: 82  SKNQDEDDYIIINHEDKILQDHKSSYKAKIYEFSSKNEVKRGIFLKDSTIYLKDEKIEKL 141

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
           ++  D        G     N + A+      GID + + + L+  + +  R E+V T S 
Sbjct: 142 IDVDDLLI----IGNHNYGNIMAASLCAYLFGIDISDIKKALKTFNSIEHRLEYVDTISG 197

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                       +S    +++         I++   G ++       +         + I
Sbjct: 198 VKVYNDSKGTNVDSSVKAIESF-----NDPIIIIAGGYNKHIDYSAFVKAFKKKGKLMVI 252

Query: 415 VTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +       E  + +          +I+  +  EA+  + +  +  DV+++
Sbjct: 253 M------GETSDILVNLCKEEGVSYIKAKDMKEAVDISFDHASYGDVILL 296


>gi|253689955|ref|YP_003019145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756533|gb|ACT14609.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 438

 Score = 43.3 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 128/397 (32%), Gaps = 52/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALATPILCDAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLP-------------ALQLLEQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH + +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEHADLCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADARCRSFGVDVGDYH-------LNRQQGETWLRVDGERVLNTREIKLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+ I  A  L  L     +P RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVKIPRASALTALTTFAGLPHRFQMAFEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E     +  +T    + +   G  +     P++  +  +   +     D    +    
Sbjct: 326 STEA---ALSGLTVEGTLHLLLGGDGKSADFSPLVPYLQGEHIRLYCFGRD---GQQLAA 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +R EI        +     +A+R   E +   D++++
Sbjct: 380 LRPEIAE------QTETMEQAMRVIAERVKPGDMVLL 410


>gi|119717289|ref|YP_924254.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nocardioides
           sp. JS614]
 gi|119537950|gb|ABL82567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nocardioides sp.
           JS614]
          Length = 488

 Score = 43.3 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 112/384 (29%), Gaps = 57/384 (14%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                   H    L VTGT+GK++    +  I + +GL S  +G                
Sbjct: 112 AWRLRDPDHRTPWLCVTGTNGKTTTVQMLDSILRAAGLRSIAVGNVG------------- 158

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                L    + +  +    ++VE SS  L  H  D +   A +  N+  DH+D++ +  
Sbjct: 159 -----LPIVEAVMDPEPYDVLAVELSSFQL--HYTDSMSAEAAAVLNVAEDHLDWYSSF- 210

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
               A  +       +++     AD    + V +     G R +        + +  +  
Sbjct: 211 -GAYAADKGRIYERAQKACVYNVADPETERLVREADVVEGARAVGFTLGMPGVGMVGLVE 269

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA----------AGLCIAIGIDSALVLE 334
                +  I         L  +           A          A L  A G+    V +
Sbjct: 270 DILADRAFIEQRDTSAAELCTISDLALHSPGGAAPHNIANALAAAALARAHGVSQGAVRD 329

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L        R   VG       +    A   ++ +  L            VV+  GG  
Sbjct: 330 GLRAFRPDRHRIAVVGAAGGVTWVDDSKATNPHAAQSSLLAYEP-------VVWIAGGLA 382

Query: 395 DQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF---IEKGNRIE---- 447
                  + +   D     ++        D + I   +    P     + + +  E    
Sbjct: 383 KGAHFDDLVRAVRDRLRGVVL-----LGRDRDVIAGALSRHAPDVPVIVVEDDETEGDHG 437

Query: 448 --AIRT----AIEMLNKQDVLVVA 465
             A+      A E+    D +++A
Sbjct: 438 GRAMERVVGAAAELARPGDTVLLA 461


>gi|170731931|ref|YP_001763878.1| UDP-N-acetylmuramate [Burkholderia cenocepacia MC0-3]
 gi|169815173|gb|ACA89756.1| UDP-N-acetylmuramate [Burkholderia cenocepacia MC0-3]
          Length = 461

 Score = 43.3 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 106/356 (29%), Gaps = 24/356 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 103 KWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +       NL  DH D      A       L
Sbjct: 163 DTAFFDKRSKFV---------------HYRPRTAVLNNLEFDHADIFPDLAAIETQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +            DA  + + +   +   R    G          V         + 
Sbjct: 208 VRTVPGVGRIVTNGRSDALERVLARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSH 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +  +     G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 268 AGRVGEVAWQVQ--GDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLAD 411
            G  +Y D+AH   +++  +  +R     +   +      R    K  +M  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +     P   D     +   +           +    ++  +E     D ++V
Sbjct: 385 ADLVFGYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLV 440


>gi|27364161|ref|NP_759689.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus CMCP6]
 gi|27360279|gb|AAO09216.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio vulnificus CMCP6]
          Length = 484

 Score = 43.3 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 103/353 (29%), Gaps = 45/353 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 132 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 191

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +    A  
Sbjct: 192 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLE----AIK 232

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
           R F  L+                 +                Q       K+    +  +V
Sbjct: 233 RQFHHLVRTVPGNGRILAPKQDGALADVLSRGCWSDQEFSGQDGEWQAVKLSKDGSHFEV 292

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +  E +     + L G+  V NAL+A      +G+   L  E L +      R E  G 
Sbjct: 293 WLQGE-QVGTVQWDLVGDHNVDNALMAIAAARHVGVTPDLACEALGRFINTRRRLELKG- 350

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V         +G        +L  
Sbjct: 351 EINGVAVYDDFAHHPTAIELTLAGLRNKVGDKKIIAVLEPRSATMKRGVHKETLAASLKQ 410

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPG-----------FIEKGNRIEA 448
           AD   +         PE I     ++                       R EA
Sbjct: 411 ADEVFLYQ-------PESIAWSVQDVAAQCQQPAFTSDNIDQFVASIAQRAEA 456


>gi|293371405|ref|ZP_06617836.1| bifunctional protein FolC [Bacteroides ovatus SD CMC 3f]
 gi|292633602|gb|EFF52160.1| bifunctional protein FolC [Bacteroides ovatus SD CMC 3f]
          Length = 481

 Score = 43.3 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 67/240 (27%), Gaps = 11/240 (4%)

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +   +    +I A D  S+E   +   A   +           +        K    
Sbjct: 229 PMMDNTIQSMHEMIEAMDEQSEEEANQMRQALLMLDLSDSLRTLDQILDKRKDAIKIHNE 288

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPGRFEFVG 350
           +      F  L        ++  L A      +  +         L  +  + G      
Sbjct: 289 M-FPFGLFTELSGAYQFENMFTILKALATLTRLNYNIRSQDYRAGLANVCQLTGLMGRWQ 347

Query: 351 TNSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIA 406
                  I  D  H  + +E I      I       I +VFG   D+D +G    + K A
Sbjct: 348 KVHSYPDIICDTGHNVDGIEYIHVQLNAIHKTFDQEIHIVFGMVNDKDIRGVLRALPKYA 407

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 A V    P +E         + G           EA++ A +    +D++ V G
Sbjct: 408 TYYFTKASVKRALPENELLALAEEAGLKGTTYPTVV----EAVQAAKKNCPPKDLIFVGG 463


>gi|264680245|ref|YP_003280155.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|299533117|ref|ZP_07046502.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
 gi|262210761|gb|ACY34859.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|298718894|gb|EFI59866.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
          Length = 477

 Score = 43.3 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 134/430 (31%), Gaps = 52/430 (12%)

Query: 59  FIPQAIAQ--GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN 116
           F+  A     G++A+V S+A    +          I VV      L+       G     
Sbjct: 54  FVGHAAENVDGSDAVVTSTAVQGDNPEVLAAREKKIPVVPRAL-MLAELMRFKQG----- 107

Query: 117 ILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            +A+ G  GK++  S V  +   +G   +F IG    ++S   + +L     I +    S
Sbjct: 108 -IAIAGAHGKTTTTSLVTSVLAEAGLDPTFVIG--GKLNSAGANAKLGQGDYIVVEADES 164

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
             S                       +  +    TN+  DH++ +             F 
Sbjct: 165 DASFLN--------------------LLPVMAVVTNIDADHMETYGHDFGRLKQAFVDFL 204

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
             +P    AI+  D    +E++ +                 +    V A   + + T+  
Sbjct: 205 HRMPFYGRAILCVDSPAVREILPKLARPVTTYGFAE--DAQVRAVNVRAEAGRMRFTVRR 262

Query: 296 EGKDFDFLF----PLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
           +             LPGE  V NAL A  + + + I    +L  LE    V  RF+  G 
Sbjct: 263 QNGQSYPDLEVVLSLPGEHNVLNALSAVAVAMELEISDEALLRALEGFKGVGRRFQRYGE 322

Query: 352 ----NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR--PIMGKI 405
               N     +  DY H    +   L   R    G+ +V+        + +       K+
Sbjct: 323 LPAANGGTFTVIDDYGHHPVEMAATLAAARGAFPGQRLVLAFQPHRYSRTRDCFEDFVKV 382

Query: 406 ALDLADIAIVTDDNPRSEDP------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNK 458
               AD  ++ +     E P        +   +   G    +   N  +           
Sbjct: 383 IGS-ADSVLLAEVYAAGEAPIVAADGRSLARALRVAGKVEPVFVENIADMPAAIAANAQA 441

Query: 459 QDVLVVAGKG 468
            DVL+  G G
Sbjct: 442 GDVLLCMGAG 451


>gi|117919243|ref|YP_868435.1| UDP-N-acetylmuramate [Shewanella sp. ANA-3]
 gi|117611575|gb|ABK47029.1| UDP-N-acetylmuramate [Shewanella sp. ANA-3]
          Length = 465

 Score = 43.3 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 115/355 (32%), Gaps = 24/355 (6%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               +LAV+GT GK+S +S +  I +  G    F IG        +     +    +   
Sbjct: 104 PERWVLAVSGTHGKTSTSSMLAWILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEAD 163

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D      A    + 
Sbjct: 164 EYDSAFFDKRSKFV---------------HYHPRTLVINNLEFDHADIFADLAAIQK-QF 207

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P +   I  AD    K+ +     +           K  H K +    ++ +V
Sbjct: 208 HHLIRTVPGQGKVIWPADSHAVKQTIDMGCWSEQETFHTAEVTKGWHAKALSDDCHEFEV 267

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
               E +     + L G+  + NAL+A      +G+  +  +  L +      R E +G 
Sbjct: 268 FFDGESQ-GVLEWALIGQHNIENALMAIAAARHVGVKPSAAIAALTRFVPPKRRLELLG- 325

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQ-GKRPIMGKIALDL 409
              G  +Y D+AH   ++   +K +R  +   +I +V     +  + G        ++  
Sbjct: 326 TVHGVSVYDDFAHHPTAIATTIKGMRAKVGQSKITIVLEPRSNTMKSGVHKDTLAHSMLQ 385

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +   +    + ++     +  +    +  +    +          D +VV
Sbjct: 386 ADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDDV---VAKVSASAKVGDTIVV 437


>gi|300722057|ref|YP_003711337.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628554|emb|CBJ89126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 441

 Score = 43.3 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 122/397 (30%), Gaps = 54/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ I+ S   +L        ++  + ++ +              +    I+A+TG++GKS
Sbjct: 71  ADLIIASPGIALATPELQAAADAGVEIIGDIE--------LFCREATAPIVAITGSNGKS 122

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L         +      +
Sbjct: 123 TVTTLVGEMAKEAGWQVGVGGNIGVP-------------ALEL-------LKKSCQLYVL 162

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +K  A +  N+  DH+  +      + A      +           
Sbjct: 163 ELSSFQLET--TYSLKAAAATVLNVTEDHMVRYPEGLPQYRAAKLRIYDQAKACIVN--- 217

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
                     +             Y    +           QQ+ ++           L 
Sbjct: 218 ---------AQDQLTLPAGGEESCYISFGVDSGDYQLDSEHQQLVVNQCPVLATRDMQLA 268

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    N L A  L  A+GI     L+ L     +  RF+ V        I    A    
Sbjct: 269 GQHNYTNGLAALALADAVGIPREASLQALRTYSGLDHRFQVVHMRDGIRWINDSKATNVG 328

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S +  L  ++    G + ++ G  G +     P+   I+ +   +     D    +   +
Sbjct: 329 STQAALSGLK--VEGTLYLLVGGDG-KSADFTPLKPDISGNNIRLYCFGRD---GDQLAQ 382

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +R EI       +      +A+R     L   D++++
Sbjct: 383 LRPEI------AVLTETMEQAMREIASKLVAGDMVLL 413


>gi|259503623|ref|ZP_05746525.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus antri DSM 16041]
 gi|259168397|gb|EEW52892.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus antri DSM 16041]
          Length = 435

 Score = 43.3 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 64/215 (29%), Gaps = 9/215 (4%)

Query: 203 KLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHN 262
                  TN+  DH DY +       +    FE    +   AI    D  +  + K   +
Sbjct: 164 HPDYAIMTNIDFDHPDYFKDIDDVRGS----FETYGRQVKKAIFAWGDDAN--LRKLDVD 217

Query: 263 AGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC 322
                   G    F                   + K   F   L GE  + N+L    + 
Sbjct: 218 VPVYYYGTGAGDDFRAENIRRTPAGSTYDAYFRDQKLGTFTIHLYGEHSILNSLAVLAVA 277

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
               +D   + + L     V  RF    T+    ++  DYAH  N ++  +   R     
Sbjct: 278 YMEKVDMDKIRQELANFSGVKRRF--SETDIADDKLIDDYAHHPNEIKATIDAARQKFPD 335

Query: 383 RIIVVFGCGGDRDQGKRPIMGKIAL-DLADIAIVT 416
           + IV         +    I G  A    AD   VT
Sbjct: 336 KEIVAVFQPHTYSRLAAYIDGFAASLSKADKVFVT 370


>gi|73662897|ref|YP_301678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|122063263|sp|Q49WW5|MURD_STAS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72495412|dbj|BAE18733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 449

 Score = 43.3 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 112/355 (31%), Gaps = 52/355 (14%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             I+ VTGT+GK++V S +  + Q+S ++    G    ++S                   
Sbjct: 111 APIIGVTGTNGKTTVTSLIGDMFQKSRVTGKLSGNIGYVASKV----------------- 153

Query: 175 SYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLF 234
                    ++  E SS  L    +D  K      TN+   H+DYH+T   Y NAK +++
Sbjct: 154 -AQEVTADDYLVTELSSFQLL--GIDQYKPHIAIITNIYSAHLDYHETLDNYQNAKKQIY 210

Query: 235 EELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294
           +     +     Y    + + +++              Q       K   I  K    I 
Sbjct: 211 KNQTENDYLICNY----HQRHLIESETLRAKTYYFSTQQEVDGIYVKDDYIVFKGFRIIH 266

Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354
            +         L        A       +  GI    +++ L     +  R +++GTN  
Sbjct: 267 KDDLVLPGEHNLENILAAVLA------ALLSGISVKAIIDSLTSFSGIEHRLQYIGTNKT 320

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414
                   A  + + +  L + +       I+    G DR                D  I
Sbjct: 321 NKYYNDSKATNTLATQFALDSFKQ-----PIIWLCGGLDRGNDF------------DELI 363

Query: 415 VTDDNPR-----SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
               N R      E  EK            I   +  +A+     ++   DV+++
Sbjct: 364 PHMKNVRMMVAFGETKEKFIKLGESQGKYVITANDVQDAVDKIQSVIEPNDVVLL 418


>gi|331650988|ref|ZP_08352016.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
 gi|331051442|gb|EGI23491.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
          Length = 491

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GI+   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGINDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|289574835|ref|ZP_06455062.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
 gi|289539266|gb|EFD43844.1| LOW QUALITY PROTEIN: cell division protein ftsQ [Mycobacterium
           tuberculosis K85]
          Length = 437

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 101/285 (35%), Gaps = 22/285 (7%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH+D++ + +AY  A    F E +      ++  DD     + +RA   
Sbjct: 126 PHVAVITNIESDHLDFYGSVEAYV-AVFDSFVERIVPGGALVVCTDDPGGAALAQRATEL 184

Query: 264 GCRVLSVGYQGKFIHLKKVCAI---------HNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           G RVL  G          + +          H +    ++           +PG     N
Sbjct: 185 GIRVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVPGRHMALN 244

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEM 371
           AL A    + IG  +  VL+ L     V  RFE VGT   G    R++ DYAH    +  
Sbjct: 245 ALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAHHPTEISA 304

Query: 372 ILKNIRTI----TSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
            L   R +      GR +VVF      R +      G+ AL+ AD   V D     E P 
Sbjct: 305 TLAAARMVLEQGDGGRCMVVFQPHLYSRTKAFAAEFGR-ALNAADEVFVLDVYGAREQPL 363

Query: 427 KIR--AEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                A +   +        +     +      +  DV+V  G G
Sbjct: 364 AGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVIVTMGAG 408


>gi|333030221|ref|ZP_08458282.1| FolC bifunctional protein [Bacteroides coprosuis DSM 18011]
 gi|332740818|gb|EGJ71300.1| FolC bifunctional protein [Bacteroides coprosuis DSM 18011]
          Length = 431

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 53/374 (14%), Positives = 106/374 (28%), Gaps = 27/374 (7%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP---------- 165
             + + GT+GK S +  +  I Q +G           I    +      P          
Sbjct: 47  KTIHIGGTNGKGSTSHTLAAILQEAGYKVGLYTSPHLIDFRERIRVNGIPVSEKYVVDFI 106

Query: 166 -------SPIYLAKALSYLSSQGVTHVSVEASSHGLDQH---RLDGIKLIAGSFTNLGRD 215
                   P+  +      +         +     ++     RLD   +I    + +   
Sbjct: 107 EKERSFYEPLSPSFFELTTALAFKYFEDQKVDVAVIEVGLGGRLDCTNIIQPDLSIITNI 166

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
             D++Q       A       ++ +++P +I   +  +  V           +       
Sbjct: 167 SNDHNQFLGNTLAAIAGEKAGIIKEQTPIVIGEYNDETLPVFAAKAVEMNAPIYYAQNNP 226

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVA--AGLCIAIGIDSALVL 333
            +  +         +            L            L A    + +   I    + 
Sbjct: 227 TLKEELCTPNAIGWRYQTQQYQNLDGELGGWCQLKNTNTLLTALPILISLGYQISENNIR 286

Query: 334 EHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD 393
           +   ++  + G            R+  D  H    +  I++  +      + +V G   D
Sbjct: 287 KGFAQVCELTGLMGRWQKLQESPRVICDTGHNVAGISTIVEQFKHQNYKELRIVIGMVND 346

Query: 394 RD-QGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           +D +G   ++ K A+     A V      SE  E   AE + G        N  +A   A
Sbjct: 347 KDIRGVLHLLPKEAIYYFTQASVKRAMSASELAEIAHAEGLKG----DTYPNVEQATMKA 402

Query: 453 IEMLNKQDVLVVAG 466
           I   +K D + V G
Sbjct: 403 IGDSDKDDFVFVGG 416


>gi|307084810|ref|ZP_07493923.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365624|gb|EFP54475.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 392

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 12  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 60

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 61  --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 117

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 118 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 176

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 177 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 236

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 237 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 296

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 297 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 353

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 354 LRAELRPGDVVLV 366


>gi|238760095|ref|ZP_04621245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
 gi|238701714|gb|EEP94281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
          Length = 444

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 133/400 (33%), Gaps = 52/400 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   + +  +   + +V +              ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALSEAAKAGVEIVGDIE--------LFCRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G     +             + L K  + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVPALSLLKQ-------LTLQKHENQLV-------VL 163

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH D +      + A       +       ++ 
Sbjct: 164 ELSSFQLET--TSSLLAKAATLLNVTEDHTDRYPFGLQQYRAAK---LRVYENAKVCVVN 218

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG         ++          +  E         L 
Sbjct: 219 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWL-------RVRGEKVLNTREMKLT 271

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+GI  +  L+ L     +  RF+ V  ++    I    A    
Sbjct: 272 GRHNYTNALAALALADAVGIPRSSSLKALTTFTGLSHRFQLVFEHNGVRWINDSKATNVG 331

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  ++    G + ++ G  G   D     R + G       D   +       E 
Sbjct: 332 STEAALDGLQ--VDGTLHLLLGGDGKSADFSGLTRFLQG-------DHIKIYCFGRDGEQ 382

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 383 LAELRPEVSQ------LTETMEQAMILLSKSLAPGDMVLL 416


>gi|215446386|ref|ZP_03433138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T85]
          Length = 384

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 4   TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 52

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 53  --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 109

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 110 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 168

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 169 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 228

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 229 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 288

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 289 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 345

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 346 LRAELRPGDVVLV 358


>gi|315181129|gb|ADT88043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 486

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 122/405 (30%), Gaps = 48/405 (11%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A      P++     R+   L+      +G      +AV GT GK++  + V Q
Sbjct: 94  ENPEIKAAREKRIPVV-----RRAEMLAELMRFRHG------IAVAGTHGKTTTTALVTQ 142

Query: 136 ICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
           I   +GL    +     + S   + RL +   +      S  S                 
Sbjct: 143 IYSEAGLDPTFV-NGGLVKSAGTNARLGSSRILIAEADESDASFLH-------------- 187

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
                 ++ +A   TN+  DH+D +             F   LP    AI+  DD   +E
Sbjct: 188 ------LQPMATIVTNIEADHMDTYGGDFETLKQTFVDFLHNLPFYGQAILCVDDPVVRE 241

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           ++ R                 I   +      K    +     + D    +PG     NA
Sbjct: 242 LIPRISRHVITYGFSEDADVRIENYRQEGQQGKFT-VVRQGRANLDITLNIPGRHNALNA 300

Query: 316 LVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMI 372
             A  +     I   ++L  +        RF+ +G    G     +  DY H    + + 
Sbjct: 301 SAAIAVATEDDIHDDVILRAMANTQGTGRRFDHLGEFDTGNGDVMLVDDYGHHPTEVGVT 360

Query: 373 LKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP----- 425
           +   R   + + +V+        R +        +     D+ ++ D     E P     
Sbjct: 361 IAAARNGWADKRLVMIFQPHRYTRTRDLYDDFANVLEQ-VDVLLMLDVYSAGEKPIAGAD 419

Query: 426 -EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
              +   I   G    I   +          +L   D+++  G G
Sbjct: 420 GRSLCRTIRSRGKLDPIFVPDSKTLPSVLANVLQDGDLVLTQGAG 464


>gi|294646129|ref|ZP_06723791.1| bifunctional protein FolC [Bacteroides ovatus SD CC 2a]
 gi|294810755|ref|ZP_06769403.1| bifunctional protein FolC [Bacteroides xylanisolvens SD CC 1b]
 gi|292638529|gb|EFF56885.1| bifunctional protein FolC [Bacteroides ovatus SD CC 2a]
 gi|294442088|gb|EFG10907.1| bifunctional protein FolC [Bacteroides xylanisolvens SD CC 1b]
          Length = 481

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 67/240 (27%), Gaps = 11/240 (4%)

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
              +   +    +I A D  S+E   +   A   +           +        K    
Sbjct: 229 PMMDNTIQSMHEMIEAMDEQSEEEANQMRQALLMLDLSDSLRTLDQILDKRKDAIKIHNE 288

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS--ALVLEHLEKLHVVPGRFEFVG 350
           +      F  L        ++  L A      +  +         L  +  + G      
Sbjct: 289 M-FPFGLFTELSGAYQFENMFTILKALATLTRLNYNIRSQDYRAGLANVCQLTGLMGRWQ 347

Query: 351 TNSRGGRIYVDYAHTSNSLEMIL---KNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIA 406
                  I  D  H  + +E I      I       I +VFG   D+D +G    + K A
Sbjct: 348 KVHSYPDIICDTGHNVDGIEYIHVQLNAIHKTFDQEIHIVFGMVNDKDIRGVLRALPKYA 407

Query: 407 LDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
                 A V    P +E         + G           EA++ A +    +D++ V G
Sbjct: 408 TYYFTKASVKRALPENELLALAEEAGLKGTTYPTVV----EAVQAAKKNCPPKDLIFVGG 463


>gi|91787310|ref|YP_548262.1| cyanophycin synthetase [Polaromonas sp. JS666]
 gi|91696535|gb|ABE43364.1| Cyanophycin synthetase [Polaromonas sp. JS666]
          Length = 872

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 51/142 (35%), Gaps = 15/142 (10%)

Query: 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITS---GRIIVVFGCGGD 393
              H  PGRF     + RG  +  DY H  +++  ++  +  + +    R  VV    GD
Sbjct: 708 NDAHNAPGRFNV--MDYRGATVIADYGHNPDAMRALVAAVDAMAAAAGQRRSVVISGAGD 765

Query: 394 R-DQGKRPIMGKIALDLADIAIVTDDNPRSE---DPEKIRAEIIHGI------PGFIEKG 443
           R D   R     +     D+ +  D   R     +   +  E + G+          E  
Sbjct: 766 RRDSDIRDQTVILGAAFDDVILYQDAAQRGRADGEVMGLLREGLEGLNKASRTSRIDEIR 825

Query: 444 NRIEAIRTAIEMLNKQDVLVVA 465
               AI TA+  L   D+ +V 
Sbjct: 826 GEFLAIDTALGRLQPGDLCLVL 847


>gi|16763516|ref|NP_459131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167989999|ref|ZP_02571099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168243459|ref|ZP_02668391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448105|ref|YP_002044096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197265563|ref|ZP_03165637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198243206|ref|YP_002214078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351465|ref|YP_002225266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855640|ref|YP_002242291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|30316095|sp|Q8ZRU4|MURD_SALTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16418625|gb|AAL19090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194406409|gb|ACF66628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197243818|gb|EDY26438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937722|gb|ACH75055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271246|emb|CAR36034.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205331455|gb|EDZ18219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205337477|gb|EDZ24241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|206707443|emb|CAR31716.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245359|emb|CBG23148.1| D-glutamic acid adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991804|gb|ACY86689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301156754|emb|CBW16229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911095|dbj|BAJ35069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|323128446|gb|ADX15876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326621822|gb|EGE28167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326626492|gb|EGE32835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332987079|gb|AEF06062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 438

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 136/400 (34%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   S +  ++  + +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPSLSAAASAGVEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G                   + L  A   L         +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLP-------------ALMLLDADREL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++  A +  N+  DH+D +      + A       +  K    ++ 
Sbjct: 158 ELSSFQLET--TSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAK---LRVYEKAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           +++G          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADERCVSFGVNMGDYH-------LNRQQGETWLRVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+G+  A  L+ L     +  RF+    ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  +     G + ++ G  G   D     R + G       D   +         
Sbjct: 326 STEAALNGL--HVDGTLHLLLGGDGKSADFSPLTRYLTG-------DRIRLYCFGRDGAQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +R EI        +     EA+R     +   D++++
Sbjct: 377 LAALRPEIAQ------QTETMEEAMRLLAPRVQPGDMVLL 410


>gi|118581149|ref|YP_902399.1| Mur ligase middle domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118503859|gb|ABL00342.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379]
          Length = 406

 Score = 43.3 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 122/364 (33%), Gaps = 27/364 (7%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
              R Y K     +AVTG+ GK+S   F+ +    S   S +IG           N    
Sbjct: 22  ICRRFYDK--TTAIAVTGSCGKTSTTHFLGK--ILSDRDSCRIGILFNCRKAIIKNLRRV 77

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
            S                    V     G    RL  ++   G  T++G+DH    +T +
Sbjct: 78  NSS------------HRFVLQEVGVEGTGCMNERLPLLRPRIGIVTSVGQDHYCNFRTLE 125

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
           A    K +L E  LP+   A++ ADD +   + +R+                    + CA
Sbjct: 126 ATAFEKGKLIEF-LPESGVAVLNADDPHVLAMARRSKARVLTYGLWEEADVRGSDIR-CA 183

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
              +  + ++ +G+       L G     + L A    +A GID       L  +   P 
Sbjct: 184 WPERLSLAVTYQGESVRIETGLFGSLLASSILAAVCGALAAGIDLKQCAASLHAVESFPR 243

Query: 345 RFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG---CGGDRDQGKRPI 401
           R     T+ R   I         ++  +L+ +    + R  VVFG           K   
Sbjct: 244 RMTIHATSQRAWYICDTAKAPYWTVAKVLEPMTDAAAPRKTVVFGSFSDTSGSSSSKYRS 303

Query: 402 MGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQD 460
           M + AL++AD              + IR  +            +   A R   E +   +
Sbjct: 304 MAREALNVADRVFFV-----GNKAQHIRRLLTPETDGRLFMVESLQAAARLLAEDVVADE 358

Query: 461 VLVV 464
           ++++
Sbjct: 359 LILI 362


>gi|330752569|emb|CBL87515.1| folylpolyglutamate synthase [uncultured Flavobacteria bacterium]
          Length = 400

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 104/362 (28%), Gaps = 14/362 (3%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT---TPS 166
           Y       + + GT+GK S +  +  + Q +G  +        +    +        +P 
Sbjct: 32  YPHKNFKSIHIAGTNGKGSTSHMIASVLQAAGYKTGLYTSPHLLDFKERVKVNGIEISPD 91

Query: 167 PIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAY 226
            + +    +    +       E S   L       +K+            +D        
Sbjct: 92  EVVIFINSNKSYFEKEKFTFFEMSV-ALAFWYFSKVKVDYAIIEVGLGGRLDATNIITPV 150

Query: 227 FNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIH 286
            +    +  +                +  +  R                    +K+ A  
Sbjct: 151 LSIITNIGLDHTQFLGKTHKKIAFEKAGIIKNRIPIIVGEKDIKTEDTFIEISRKLNAPL 210

Query: 287 NKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF 346
              + T +    D    +       +   + A      I +D++++ + L ++    G  
Sbjct: 211 YFVKNTSANFTSDLKGFY---QIKNIQTVITAFNHLPDINLDNSIIKKGLNRVVENTGLK 267

Query: 347 EFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQ-GKRPIMGKI 405
                     ++ +D  H   +L +I + +  I+ G++ +V G   +R+      +  K 
Sbjct: 268 GRWQVVQNSPKVILDIGHNREALTLISQQLSEISYGKLYLVMGFIKEREINSLLSLFPKE 327

Query: 406 ALDLADIAIVTDDNPRSEDPEKIRAEIIHGIP-GFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           A        ++  N     P KI    +           +   A + AI      D++ V
Sbjct: 328 AN-----FYLSSPNIERAMPLKILKSFLESSDLKINYFKSIPIAYKMAISNSGPDDLIFV 382

Query: 465 AG 466
            G
Sbjct: 383 TG 384


>gi|311115070|ref|YP_003986291.1| tetrahydrofolate synthase [Gardnerella vaginalis ATCC 14019]
 gi|310946564|gb|ADP39268.1| tetrahydrofolate synthase [Gardnerella vaginalis ATCC 14019]
          Length = 484

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 359 YVDYAHTSNSLEMILKNIRT-ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417
            +D  H  N+ E + K I       ++I V     D+          +   +    IVT 
Sbjct: 331 IIDGGHNVNAAESLRKTIEENYNFEQLIGVVAMMADKQVE---EYLGVLEPILTKIIVTR 387

Query: 418 DNPRS-----EDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVV 464
           ++ R      ED EKI   +  G    I   +  +AI+ A+ ++++ D         +++
Sbjct: 388 NSWRDRVMDPEDLEKIAVNVF-GRDRVIRVDDLPDAIQEAVNLVDEDDELGVGYGHGVLI 446

Query: 465 AG 466
            G
Sbjct: 447 CG 448


>gi|291532078|emb|CBK97663.1| folylpolyglutamate synthase/dihydrofolate synthase [Eubacterium
           siraeum 70/3]
          Length = 416

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 64/211 (30%), Gaps = 8/211 (3%)

Query: 257 MKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNAL 316
            K                + I       + +     +    K  ++   + GE Q+ NAL
Sbjct: 199 AKEVMRVIDDKCREYNCEEIIPDMSRVQMLHMDITDVFFSYKGMNYHLVMSGEHQIKNAL 258

Query: 317 VAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNI 376
            A   C  + I           L     R      +  G    +D +H  +++    K +
Sbjct: 259 CAIEACRILNI---EYSSVFTGLERSALRARMEEVSVNGVACIIDGSHNPSAMRAAEK-L 314

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRA-EIIHG 435
            +    +I  V G   ++D      +  I     D+  V    P      ++    I  G
Sbjct: 315 LSCDKRKIHAVVGMMANKDWQTALKI--ILPRFEDVIFVDGFMPGCVPASQLTRFAIEQG 372

Query: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +      G+   AI  A      +D+ +V G
Sbjct: 373 V-RATACGDLNSAISQAALKAGTKDIAMVTG 402


>gi|288941323|ref|YP_003443563.1| FolC bifunctional protein [Allochromatium vinosum DSM 180]
 gi|288896695|gb|ADC62531.1| FolC bifunctional protein [Allochromatium vinosum DSM 180]
          Length = 432

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 53/381 (13%), Positives = 111/381 (29%), Gaps = 34/381 (8%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIY 169
            G+ P  ++ V GT+GK S  + ++ +   +G                +      P    
Sbjct: 46  RGRLPCPVITVGGTNGKGSTVAMIESMALAAGYRCGVYTSPHLCRYNERVRLDGVPVADE 105

Query: 170 LAKALSYLSSQGVTHVSVEASSHG----LDQ----------------HRLDGIKLIAGSF 209
                     +    +S+     G    LD                  RLD + LI    
Sbjct: 106 ALCDSFERIDRAREGISLTYFEFGTLAALDIFARARPDLVVLEVGLGGRLDAVNLIDSDV 165

Query: 210 TNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLS 269
           + +    +D+           +   +  + +     I       + +   A   G   L 
Sbjct: 166 SVVTSIGLDH-TDWLGDSLESIAREKAGIFRPGRPAIIGQRDAPETLRAEAARIGALALQ 224

Query: 270 VGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDS 329
           +G +       +           +++                   A+ A           
Sbjct: 225 LGRELDHARTTEGWIWTGPDGQRLALPIPALRGS---FQLDNATAAIAAVQALRERLPVP 281

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI-TSGRIIVVF 388
              +    +   +PGRF+ +          +D AH   + E +  N+R     GR+  V 
Sbjct: 282 VNAIRAGLQRARLPGRFQVMPGAVT---WILDVAHNGEAAEALAANLRDFACPGRLRAVL 338

Query: 389 GCGGDRDQGKRPIMGKIALDLADIAIVT-DDNPRSEDPEKIRA--EIIHGIPGFIEKGNR 445
               D++  +   +     +  +   +   ++ R+   E++ A  + + G       G  
Sbjct: 339 AVLADKNPER---LVTPIREYVNDWYLAQSEDARALPVEQLSARLDGLIGANRRGAFGCV 395

Query: 446 IEAIRTAIEMLNKQDVLVVAG 466
            EAI  A+      D L++ G
Sbjct: 396 AEAIGAALAESAPGDALLIVG 416


>gi|189439081|ref|YP_001954162.1| folylpolyglutamate synthase [Bifidobacterium longum DJO10A]
 gi|189427516|gb|ACD97664.1| Folylpolyglutamate synthase [Bifidobacterium longum DJO10A]
          Length = 543

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 128/406 (31%), Gaps = 56/406 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------------------ 151
           + +    ++ +TGT+GK S A   + IC+  G+ +                         
Sbjct: 46  HPEQSFRVIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEKINERIAIDGQQLSDD 105

Query: 152 ----------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                                 Q     +   +  A A+   +   V    VE    GL 
Sbjct: 106 DFIDIWDQTKDLVALVDAKMEEQGKPKMSFFEVLTAMAIWKFADTPVDVAIVEVGMGGL- 164

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
               + +   A     +  DH+ +          +     +            ++A    
Sbjct: 165 WDATNVLNADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEEAVMPI 224

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + + A      ++  GY+                  T +   +          +     A
Sbjct: 225 LAEAAERNHAMLVRDGYEMTVSDRMAAVGGQVATLTTPNGTYEGVPIAKFGEHQAHNALA 284

Query: 316 LVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            +AA   +             E L    +PGR E + T+     I +D  H  N+ E + 
Sbjct: 285 ALAASEVVIPVNGPLDGDLVGEALSSVKIPGRIEQIRTSPT---IILDGGHNVNAAEALR 341

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKI 428
           K I      +  +V      RD+     +G +   +    +VT+++ R     +++ EKI
Sbjct: 342 KAIEESYDFKQ-LVGVVAMMRDKQVEEYLG-VLEPILSSVVVTENSWRERVMPADELEKI 399

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
             ++  G    I++ N  +AI+TA+ M++ +D         +++ G
Sbjct: 400 AVDVF-GRDRVIKEANLPDAIQTAVNMVDAEDELGVGYGHGVLICG 444


>gi|254363249|ref|ZP_04979297.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
 gi|153095146|gb|EDN75693.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
          Length = 454

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 82/281 (29%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A       L   +          AD
Sbjct: 166 SAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGCILSAIAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 +       G          +     K       Q     +  K  +  + + G+
Sbjct: 226 QNVQDTLK-----MGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWSIIGK 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G++     E L K      R E  G    G  +Y D+AH   ++
Sbjct: 281 HNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKG-EVNGITVYDDFAHHPTAI 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDL--ADIAIVTDDNPRSE 423
           E  +  +R        ++       +  K   MG    +IA  L  A+   V   +  + 
Sbjct: 340 EATIDALRGKVGKNQRILAVLEPRSNTMK---MGVHKDEIAPSLHDAEAVFVYQPDIIAW 396

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +I   +           +    +   ++     D ++V
Sbjct: 397 SVSEITNVLSQPAYWSANIDDL---VDLVVKEAKPTDHILV 434


>gi|50122739|ref|YP_051906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium atrosepticum SCRI1043]
 gi|60390382|sp|Q6D0I1|MURD_ERWCT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49613265|emb|CAG76716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 438

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 129/397 (32%), Gaps = 52/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALATPILCDAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLP-------------ALQLLEHPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH + +      + A      E           
Sbjct: 158 ELSSFQLET--TTSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLHIYEHADLCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADARCRSFGVDVGDYH-------LNRQQGETWLRVDGERVLNTREIKLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+ I  A  L  L     +P RF+     +    I    A    
Sbjct: 266 GQHNYTNALAALALADAVKIPRASALTALTSFTGLPHRFQMAFERNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G +     P++  +  +   +     D    +    
Sbjct: 326 STEAALSGLA--VDGTLHLLLGGDG-KSADFSPLVPYLQGERIRLYCFGRD---GQQLAA 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +R EI        +     +A+R   E +   D++++
Sbjct: 380 LRPEIAE------QTETMEQAMRVIAERIRPGDMVLL 410


>gi|113969769|ref|YP_733562.1| FolC bifunctional protein [Shewanella sp. MR-4]
 gi|113884453|gb|ABI38505.1| FolC bifunctional protein [Shewanella sp. MR-4]
          Length = 432

 Score = 43.0 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 108/366 (29%), Gaps = 23/366 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKAL 174
             ++ V GT+GK +  + ++ I + SGL+         +    +       +      A 
Sbjct: 57  SKVVTVAGTNGKGTTCAMLENILRLSGLTVGVYSSPHMLKYNERVRINGQDASDEAFVAA 116

Query: 175 SYLSSQGVTHVSVEASSHG------------LDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
                     +S+    +             LD   L+         TN+    I    +
Sbjct: 117 FEQIEAARGEISLTFFEYATLAGLILFKAAKLDVVILEVGLGGRLDATNMIDADISVVTS 176

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
                 A +    EL+ +E   I          ++   +            G  ++    
Sbjct: 177 VDLDHEAYLGNTRELVGREKAGIFRQGRPA---IVGEPNLPHTVNDVAQDVGAKLYRVGE 233

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLC-IAIGIDSALVLEHLEKLHV 341
              + +   T   +G+ F           + NA     +        +A ++        
Sbjct: 234 EFSYQQDGQTWDYQGQLFTLKQLSLPTLPLPNAATVIAIVEHGWPNIAADIIAKGISSAR 293

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
           + GR E V   +    I +D AH  ++   ++K +  + +G+   VF   G         
Sbjct: 294 LTGRLEQV---NEQPLILLDVAHNPHAARFLVKQLTPMVTGKR--VFALCGMLKDKDIAG 348

Query: 402 MGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
           +  +   L D   +      R  +   +R  +        E  +   A       +   D
Sbjct: 349 VLPVVSPLIDTWYLVSLQGERGANASLLRQTLAQD-TKAHEFDDIASAWTALKAQIQPDD 407

Query: 461 VLVVAG 466
           V++V G
Sbjct: 408 VVIVFG 413


>gi|219870389|ref|YP_002474764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
 gi|219690593|gb|ACL31816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
          Length = 432

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 59/395 (14%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV+S   +L            + VV +   F               I+A+TG++GKS+V
Sbjct: 69  LIVISPGLALATAEIQQAIQAGVEVVGDIELFYREA--------KAPIIAITGSNGKSTV 120

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            +   ++ +++G+     G                   + L K    L         +E 
Sbjct: 121 TTLTTEMAKQAGVKVGMGGNIGVP-------------ALSLLKGDYEL-------YVLEL 160

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+      +K  A +  N+  DH+D +++ + Y  AK++++          I+  +
Sbjct: 161 SSFQLET--TYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIY----HHAENVIVNGE 214

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           D  +                          K         ++    E         + G 
Sbjct: 215 DPQTFPEQAVGSLKK------------FAEKDAEYTACNGELYSGDEAVIAIDELKITGR 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             V NAL +  L  A G+D + +++ L+    +  RF+ V TN     I    A    S 
Sbjct: 263 HNVMNALASMSLAEAAGVDRSGIVKALQSYSGLDHRFQLVPTNDGVRWINDSKATNVGST 322

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              L  ++    G + ++ G  G +D     +   I            D           
Sbjct: 323 VAALNGLQ--VEGTLYLLLGGDG-KDADFSELKPFINQPNTVCYCFGKDG---------- 369

Query: 430 AEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AE+       +      +A+      L   D++++
Sbjct: 370 AELAALTQNSVLVETMEQAVAQIRLRLKAGDMVLL 404


>gi|168048570|ref|XP_001776739.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671888|gb|EDQ58433.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 680

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 22/164 (13%)

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                +   +      L     V  RF+FVG +  G  I  DYAH    +  +L+  R  
Sbjct: 499 AQAKLMKRTAEAAGRALGAFSGVRRRFDFVG-SVHGCHIIDDYAHHPTEVRAVLQAARQR 557

Query: 380 TSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVT----DDNPRSEDP---EKIRA 430
              + I V        R     P     A   AD  IVT      N  +E     E +  
Sbjct: 558 YDQQPIWVIFQPHTVSRLAAFLPDFAP-AFSAADRVIVTQVYAARNIPTEKVVTGEDLAN 616

Query: 431 EIIHGIPGFIEKGNRIEAIRT------AI---EMLNKQDVLVVA 465
            II   P  +   +    +        A+   EM ++ +++++ 
Sbjct: 617 AIIG--PPAVYIPDLDVVVERLSWELAALDKNEMNDRGNIVLLT 658


>gi|76880190|dbj|BAE45866.1| UDP-N-acetylmuramate-alanine ligase [Physcomitrella patens]
          Length = 615

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 22/164 (13%)

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379
                +   +      L     V  RF+FVG +  G  I  DYAH    +  +L+  R  
Sbjct: 434 AQAKLMKRTAEAAGRALGAFSGVRRRFDFVG-SVHGCHIIDDYAHHPTEVRAVLQAARQR 492

Query: 380 TSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVT----DDNPRSEDP---EKIRA 430
              + I V        R     P     A   AD  IVT      N  +E     E +  
Sbjct: 493 YDQQPIWVIFQPHTVSRLAAFLPDFAP-AFSAADRVIVTQVYAARNIPTEKVVTGEDLAN 551

Query: 431 EIIHGIPGFIEKGNRIEAIRT------AI---EMLNKQDVLVVA 465
            II   P  +   +    +        A+   EM ++ +++++ 
Sbjct: 552 AIIG--PPAVYIPDLDVVVERLSWELAALDKNEMNDRGNIVLLT 593


>gi|255034841|ref|YP_003085462.1| FolC bifunctional protein [Dyadobacter fermentans DSM 18053]
 gi|254947597|gb|ACT92297.1| FolC bifunctional protein [Dyadobacter fermentans DSM 18053]
          Length = 433

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 319 AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT 378
           A L     I    V+  L  +  + G         +   +Y D AH +  L   L    +
Sbjct: 278 ALLSKGWNICDEAVIRALRAVGSITGLKGRWQQLGQAPNVYCDTAHNTAGLTATLAQFES 337

Query: 379 ITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPG 438
           +  G+   V G  GD+D      M  +    A        N R+    +++A  +     
Sbjct: 338 VCKGKKRFVIGFVGDKDIS---TMLSLFPRDAQYYFCEPSNMRALKAPELQARALECGLA 394

Query: 439 FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
               GN  EA+  A+      D + V G
Sbjct: 395 GETFGNVKEALAAALRDSAPTDAIYVGG 422


>gi|300173070|ref|YP_003772236.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887449|emb|CBL91417.1| UDP-N-acetylmuramate--alanine ligase [Leuconostoc gasicomitatum LMG
           18811]
          Length = 444

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 113/398 (28%), Gaps = 32/398 (8%)

Query: 65  AQGAEAIVVSSAYSLQDFSATIRSNTPILV-----VDNTRKFLSLFASRLYGKHP--ENI 117
            QG   I           +    +   IL      VD  R+ + +  +    +       
Sbjct: 24  DQGNIVIGSDIDAYTYTQAPLEAAGIKILSFQSENVDKYREAIFVRGNAFSDEQVEVARA 83

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           LA+  T      A   Q +   S   +   G TST    A   +   P+   +       
Sbjct: 84  LALGVTMMTYPEAVQEQIMQTTSIAVAGAHGKTSTTGLLAHVLKNIAPTSYLIGDGTGRG 143

Query: 178 SSQGVTHVSVEASSHGLDQHRLDGIK-LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                  V     +   +  R            TN+  DH DY +  +   NA    F +
Sbjct: 144 VPNSQFFV-----AEADEYRRHFKDYAPDYAILTNIDFDHPDYFKNIEDVTNA----FSD 194

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                  AI    D     +      A         +      + +          ++  
Sbjct: 195 FANHVKKAIFAWGDDAH--LRALRPKATVYYYGTSPENDDFVAENIHKSTQGSHFNVTFR 252

Query: 297 GKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRG 355
           G+   +F  PL G+  + NAL    +     +D  L+ E+L     V  RF         
Sbjct: 253 GETLGEFSVPLFGQHSILNALAVIAVAYMEKVDLDLIREYLMTYQGVKRRFSEKQIA--D 310

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIA 413
             +  DYAH    ++  L   R     + I+         R    +    K     AD  
Sbjct: 311 ITVIDDYAHHPTEIDATLDAARQKYPNKQIIAIFQPHTYSRVIAYKDEFAKSLEA-ADKV 369

Query: 414 IVTDD-NPRSEDP-----EKIRAEIIHGIPGFIEKGNR 445
            + +      E        +I AEI     G IE+ N 
Sbjct: 370 YLANIFGSARESVGAVTSAEIGAEISK-FGGIIEEENM 406


>gi|322436407|ref|YP_004218619.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX9]
 gi|321164134|gb|ADW69839.1| UDP-N-acetylmuramate [Acidobacterium sp. MP5ACTX9]
          Length = 478

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 135/404 (33%), Gaps = 41/404 (10%)

Query: 82  FSATIRSNTPILVVDNTRKFLSLFASRLYGKH--PENILAVTGTSGKSSVASFVQQICQ- 138
            +A  R N  +  V + R   S  A+ L+ +       L V GT GK++  S +  I + 
Sbjct: 75  GNAISRGNVELERVLDERIPFSSMAALLHDEFLVGRESLVVAGTHGKTTTTSMLAWIYET 134

Query: 139 -----RSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHG 193
                     SF IG  +     +   R T P  +                   +     
Sbjct: 135 AAKYDAKFAPSFLIGGVAENFGASFMVRATRPFLLE---------GDEYDTAFFDKGPKF 185

Query: 194 LDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYS 253
           L           A   T++  DH D +    A   A  R    +  +        +   +
Sbjct: 186 LHY------FPDAAILTHVEFDHADIYDDLNAVKTAFKRFVNLIPRRGRLVAYDGNVNVT 239

Query: 254 KEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQV 312
           + V K         L+ G       +  + A     + T+  +G+ F     P+PGE   
Sbjct: 240 ECVAKAFCAVERYGLAPGSY---WRVTGLTADEGGTRWTLERDGEFFAELKLPMPGEHNA 296

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            NA  AAGL    G+    + E L     V  R E       G  +  D+AH   ++   
Sbjct: 297 LNATAAAGLAAGQGVAVEAIKEALATFRSVKRRLEV-RAEVNGITVIEDFAHHPTAIRET 355

Query: 373 LKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALD---LADIAIVT-----DDNPRSE- 423
           L+ ++   +GR  +V       +  +R +  +  +D   +AD  ++      +  P  E 
Sbjct: 356 LRALKASYAGRR-LVAILEPRSNTLRRNVFEEALVDSLLIADQVVIAGVFKSESIPEHER 414

Query: 424 -DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIE-MLNKQDVLVVA 465
            +PE + A +           +   AI   +   L   DV+ + 
Sbjct: 415 LEPEAVAAGLRVRGTPAQVLAD-AGAIVKVLAPELKSGDVVAIL 457


>gi|46204815|ref|ZP_00049440.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 246

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 12/195 (6%)

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                 +        +  D + P+PG     NA  A  +   +G+ +  + + L     V
Sbjct: 37  RFRVMIRDRRPGFRMEIEDLVLPMPGRHNALNATAALAVAHELGVPAETIRKALAGFGGV 96

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
             RF   G    G  I+ DY H    ++ +L+  R+ T G +I V      R    + + 
Sbjct: 97  KRRFTRTG-EWNGAAIFDDYGHHPVEIQAVLRAARSSTDGNVIAVV--QPHRYSRLQSLF 153

Query: 403 GKIALDL--ADIAIVTDDNPRSEDP-EKI-RAEIIHGIP----GFIEKGNRIEAIRTAIE 454
                    AD  IV       E P E I R  +I G+           +R E +   + 
Sbjct: 154 EDFCTCFNDADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRDAVALDRPEDLAGIVA 213

Query: 455 -MLNKQDVLVVAGKG 468
                 D +V  G G
Sbjct: 214 TRAQPGDYVVCLGAG 228


>gi|116629853|ref|YP_815025.1| folylpolyglutamate synthase [Lactobacillus gasseri ATCC 33323]
 gi|238853955|ref|ZP_04644312.1| tetrahydrofolate synthase [Lactobacillus gasseri 202-4]
 gi|311110509|ref|ZP_07711906.1| tetrahydrofolate synthase [Lactobacillus gasseri MV-22]
 gi|116095435|gb|ABJ60587.1| Folylpolyglutamate synthase [Lactobacillus gasseri ATCC 33323]
 gi|238833400|gb|EEQ25680.1| tetrahydrofolate synthase [Lactobacillus gasseri 202-4]
 gi|311065663|gb|EFQ46003.1| tetrahydrofolate synthase [Lactobacillus gasseri MV-22]
          Length = 419

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 359 YVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLAD-IAIVTD 417
            VD AH   ++  +L  IR    G+I ++ G   D+D      +G +     D    +T 
Sbjct: 302 IVDGAHNLQAMTNLLHLIRKENQGQIYILLGMMKDKD------LGLVTNLFKDEKVTLTR 355

Query: 418 -DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            D PR+   E   AE       +  + N   A       L   D+L+V G
Sbjct: 356 IDYPRAARLEDFPAEAQK---KYNYEENFKIAYTNLKNKLKPHDILLVTG 402


>gi|323488418|ref|ZP_08093665.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
 gi|323397925|gb|EGA90724.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
          Length = 437

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 68/228 (29%), Gaps = 12/228 (5%)

Query: 193 GLDQHRLD-GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA 251
             +  R            TN+  DH DY       F A     E     +   I   DD 
Sbjct: 151 ACEYRRHFLAYHPDYAIMTNIDFDHPDYFTGIDDVFKAFE---EMAQQVKKCIIACGDDE 207

Query: 252 YSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQ 311
           Y   + +            G +  F     V ++       +        F  P+ G+  
Sbjct: 208 Y---LQQIQAPTPVVYYGFGEENDFQARNIVKSVDGTTFDVVIRNEFFHTFKLPMFGDHA 264

Query: 312 VYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEM 371
           + NAL    LC    I + ++ +  E    V  RF    T      +  DYAH    +  
Sbjct: 265 ILNALAVISLCHYESIPADIIQQQFEDFEGVKRRF--TQTAIADRILIDDYAHHPTEIRA 322

Query: 372 ILKNIRTITSGRI-IVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
            L++ R     R  I +F      R Q           + AD   + D
Sbjct: 323 TLQSARQKYPERELIAIFQPHTFTRTQTFLQEFADCLTE-ADHVYLCD 369


>gi|295425329|ref|ZP_06818032.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295065105|gb|EFG56010.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 437

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQADYTSAFQSA----ADQTKKALFVWGDDKRLQSLK-- 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +             F  +    +    +   ++       F   L G+  + N+     
Sbjct: 220 TSIPKYTYGFSDSDDFQAVNVEKSTTGSKFNVLAHGEDLGQFEIHLFGDHSILNSTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + + L        RF     N     +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMEDIKKGLLTFKGAKRRFSEKDFN--DIAVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   +++  IP
Sbjct: 338 PEKKLVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREANGDISSEDLVKNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|238924733|ref|YP_002938249.1| folylpolyglutamate synthase [Eubacterium rectale ATCC 33656]
 gi|238876408|gb|ACR76115.1| folylpolyglutamate synthase [Eubacterium rectale ATCC 33656]
          Length = 424

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 95/384 (24%), Gaps = 11/384 (2%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +V +    +       +   P + V  T        +       +  + V        V
Sbjct: 25  VVVTAQVIKVLREKGKQKRIIPYIHVAGTNGK-GSVCAFFSSILKKEHMRVGTFVSPHLV 83

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
               +       +    +                T     LA AL Y   Q   ++ +E 
Sbjct: 84  DFEERITVDGRMIPKEDVTRLGNYLLDIDFGIGLTMFDYCLAMALLYFEEQQCDYMVIET 143

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
              G      + I     +                    A  +                 
Sbjct: 144 G-LGGRLDSTNAIGTPQCAVITKIGYDHMAILGSDIADIAAEKAGIIKENGTVVVEQQDK 202

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
            A      +        +              +      Q    +       ++      
Sbjct: 203 RAMQVIEQEAQKKHARIITVEQSDIARCSGYALRLCGTFQWENAAAAELAARYVLEKYYG 262

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
              Y          +   D    ++   +  V PGR E V   S+   + VD AH SN +
Sbjct: 263 GPEYEIQYDKTGPKSEKTDLNDRIKSALEEAVWPGRMEIV---SKKPFLLVDGAHNSNGV 319

Query: 370 EMILKNIRTITSGRIIVVF-GCGGDRDQGKRPIMGKIALDLADIAI-VTDDNPRSEDPEK 427
           + + +++  +  G     F G   D+D     +M +  L LA+    VT D+ R+     
Sbjct: 320 DALKESLMQMYPGEKFCFFMGVMADKDYD---VMIREILPLAEEFYTVTPDSDRALQASH 376

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRT 451
           +   I        E     E IR 
Sbjct: 377 LADFIRKEGVEATELSGVDE-IRK 399


>gi|17228521|ref|NP_485069.1| folylpolyglutamate synthase [Nostoc sp. PCC 7120]
 gi|17130372|dbj|BAB72983.1| folylpolyglutamate synthase [Nostoc sp. PCC 7120]
          Length = 417

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 15/143 (10%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFG 389
              + +       PGR +      +  ++ +D AH   +  ++   + T+ +  +  V G
Sbjct: 271 EAEIINGMAKTKWPGRMQ--WITWQNHKLLIDGAHNPAAAHVLRNYVDTLNNQSVTWVMG 328

Query: 390 CGGDRDQGKRPIMGKIALDLADIAIVT------DDNPRSEDPEKIRAEIIHGIPGFIEKG 443
               +D      + +  L   D   +         NP  E   K+ +++   +       
Sbjct: 329 MLSTKD---HADIFQALLRPNDQLYLVPVPDNNSANP--EVLSKLASDVCPKLSTCQTFS 383

Query: 444 NRIEAIRTAIEMLNKQDVLVVAG 466
           N   AI TA    +  +++V+ G
Sbjct: 384 NLPLAIETAFN--STDNLVVLCG 404


>gi|120555313|ref|YP_959664.1| UDP-N-acetylmuramate [Marinobacter aquaeolei VT8]
 gi|120325162|gb|ABM19477.1| UDP-N-acetylmuramate [Marinobacter aquaeolei VT8]
          Length = 464

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 121/360 (33%), Gaps = 32/360 (8%)

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
            A  +       ++AV GT GK++  + +  I  ++G  +  +        F    RL +
Sbjct: 95  LAREVLRH--RWVMAVAGTHGKTTTTAMLLWILDQAGFDAGYL-IGGVPQDFPVSARLGS 151

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
                +       +        +    + L  +             NL  DH D     +
Sbjct: 152 SDFFVIEADEYDSAFFDKRSKFIHYRPNTLILN-------------NLEFDHADIFDNVE 198

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC- 283
           A    +       +P +   +  A D +    ++    +  +  ++G +       +   
Sbjct: 199 AIER-QFHHLVRTVPSQGLIVRPARDRHLDNALEMGCWSPVQDTAIGSEISRTADWRAEL 257

Query: 284 -AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
            A    + + I  E       + L G   V NAL A      +G+     +  L +   V
Sbjct: 258 LAEDGSRFMVIHHEQPVATLKWGLTGLHNVRNALSAIAAARHVGVTPDHAVAALCRFSGV 317

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCG----GDRDQGK 398
             R E VG    G R+Y D+AH   ++   L+ +R       I+           +   K
Sbjct: 318 KRRMELVG-EIGGVRVYDDFAHHPTAIASTLEGLRNRVGDEPILAIIEPRSNTMKQGVHK 376

Query: 399 RPIMGKIALDLADIAIVTDDNPRSED--PEKIRA-EIIHG-IPGFIEKGNRIEAIRTAIE 454
           + ++   A  LAD  +    N    D  PE + + +  HG +     + +  E I  A+E
Sbjct: 377 QTLIPSAA--LADRVL--WGNLSDMDWLPELVGSWQAEHGELDHHRVEASVEELIEKALE 432


>gi|330815441|ref|YP_004359146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           gladioli BSR3]
 gi|327367834|gb|AEA59190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           gladioli BSR3]
          Length = 503

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 11/137 (8%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A +L  L +      R E + +      +         +    L  +          V
Sbjct: 343 PPAALLHGLREYRGEAHRVELIASLDGVDYVDDSKGTNVGATVAALDGLAQ------RTV 396

Query: 388 FGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
              GGD        +           ++        D   IR  +       ++      
Sbjct: 397 LIAGGDGKGQAFAPLAAPVARWCRTVMLI-----GRDAPLIREALAETGVPLVDHATLEA 451

Query: 448 AIRTAIEMLNKQDVLVV 464
           A++ A  M    DV+++
Sbjct: 452 AVQAASMMAEPGDVVLL 468


>gi|184155796|ref|YP_001844136.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum IFO
           3956]
 gi|227515610|ref|ZP_03945659.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum
           ATCC 14931]
 gi|260663487|ref|ZP_05864377.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum
           28-3-CHN]
 gi|229620037|sp|B2GDC4|MURC_LACF3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|183227140|dbj|BAG27656.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum IFO
           3956]
 gi|227086040|gb|EEI21352.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus fermentum
           ATCC 14931]
 gi|260552028|gb|EEX25081.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus fermentum
           28-3-CHN]
          Length = 437

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 77/280 (27%), Gaps = 20/280 (7%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY +      ++      ++                  +    
Sbjct: 162 AYHPDYAIMTNVDFDHPDYFKDLADVKDSFETYGRQVKKGLFAWGEDKS------LRDLN 215

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +             F     V             + K   F   L GE  V N+L    
Sbjct: 216 VDVPVYYYGTAPDDDFRAANIVRTPDGSTYDAYYKDQKLGTFTIHLYGEHSVLNSLAVVA 275

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     ID   +   L     V  RF     +    ++  DYAH  + ++  +   R   
Sbjct: 276 VAYMEKIDLEKIKAELANFSGVKRRF--AEEDIADMKVIDDYAHHPSEIKATIDAARQKF 333

Query: 381 SGRIIVVFGCGGDRDQGKRP--IMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGI 436
             + +VV        +        G+     AD   VT    + R ++      ++   I
Sbjct: 334 PQKELVVVFQPHTYSRLAAYLTEFGQSLSR-ADKVFVTPIFGSIREQNGSVSAKDLEDLI 392

Query: 437 PGFIEKGNRIEA-IRTAIEMLNKQDVLVVAGKGH-ETVHI 474
           PG     +  +A I   +       V+V  G G  E    
Sbjct: 393 PGS---EDIDQASITKLL--AYHDAVVVFMGAGDIEKYED 427


>gi|15607039|ref|NP_214421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
 gi|30315978|sp|O67852|MURD_AQUAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2984290|gb|AAC07814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
          Length = 415

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 122/361 (33%), Gaps = 54/361 (14%)

Query: 104 LFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT 163
             A R        ++A+TGT GKS+       I ++     F+ G      S      L 
Sbjct: 76  ELAYRF---FKGKVIAITGTDGKSTTTRLTYLILKKFFDEVFEAGNIGKPFSEVV---LE 129

Query: 164 TPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQ 223
            P  I                  +E SS       L   +   G+F +   DH+D+H + 
Sbjct: 130 NPEGI----------------AVLEVSSFQGKT--LKTFRPNIGAFISFSVDHLDWHPSI 171

Query: 224 QAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVC 283
           + Y  +K R+FE                    ++        +  S   +  F  L    
Sbjct: 172 EDYLKSKYRIFENQT------------EEDFLILNDLVYEIKKTPSRARKVLFSELYINS 219

Query: 284 AIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVP 343
                + + +            + G   VYNA VA+ + + +G+      E + +   +P
Sbjct: 220 DSVFYKDIRLFNPKN-----LKIRGLHNVYNASVASLIALTLGLKPEDFEEVIYEFRGLP 274

Query: 344 GRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR-PIM 402
            R EF+G  +         + T +    ++  ++T     +I++    G +D+G     +
Sbjct: 275 HRLEFLGNFNGVEVYNDSKSTTPH---ALMHALKTFPDNSVILIV---GGKDKGADFYSL 328

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
             I      IA+        E  EKI  +    I          EA++ A E+    +V+
Sbjct: 329 RHIVQKKVKIALAI-----GETKEKI-KDSWKDITEVKTCNTLEEAVKLAREVSKLGNVV 382

Query: 463 V 463
           +
Sbjct: 383 L 383


>gi|313682069|ref|YP_004059807.1| mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154929|gb|ADR33607.1| Mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 480

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 133/368 (36%), Gaps = 42/368 (11%)

Query: 99  RKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           R+     AS         I+ VTG+ GK+S+ +F+ Q+  +           +T+    +
Sbjct: 147 RQAQGKIASM----KDLTIVCVTGSYGKTSMKNFIAQVLGQKFNVYATPRSVNTLGGIIR 202

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHID 218
           D   + P    +    +     G  +   +             +         +G  H++
Sbjct: 203 DVNESLPENTQVYICEAGAREVGDIYAIAQL------------LHPQIVVVGKVGPQHLE 250

Query: 219 YHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIH 278
           Y +T +     K+ +      K++       +   ++V                      
Sbjct: 251 YFKTLERIQRTKLEIIHSNRLKKAFIHTSVTNEPHEKV----------------TFFGDD 294

Query: 279 LKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEK 338
           ++ + A        +++EG++  F   + G FQ  N   A  +   +G+ S  ++  +EK
Sbjct: 295 VRNLKATLEGIDFDLNIEGEERHFHTSVLGGFQTININAAILIASEMGMSSDEIVGAVEK 354

Query: 339 LHVVPGRFEFVGTNSRGGRIYVD-YAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
           L  V  R E +     G  I  D Y    + +   ++ + ++  GR ++V     +  + 
Sbjct: 355 LKSVEHRLERIDAG--GKIILDDGYNGNIDGMLEGVR-LCSLHPGRKVIVTPGLVESTEE 411

Query: 398 KRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN 457
               +      + DIAI+T     S +  +   E+   +P  I   ++ + ++T  E+  
Sbjct: 412 LNSELISAINGVFDIAIIT----GSLNAAQFDKELR--VPQKIMLADKSQMVKTLGEVTK 465

Query: 458 KQDVLVVA 465
             D+++ A
Sbjct: 466 AGDIILFA 473


>gi|311087110|gb|ADP67190.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087656|gb|ADP67735.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 152/484 (31%), Gaps = 83/484 (17%)

Query: 4   QDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
            DL+      +LIN  +   +Q  E+ I  V                         FI  
Sbjct: 17  SDLLESLMIKKLINLGATIYLQHSEKNIKNV------------------------DFI-- 50

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            I     AI    + + ++  A  + N PIL     R  +            +  +AV+G
Sbjct: 51  -IKS--SAI----SSNNKEILAAKKRNIPIL----LRAEMIEILMSF-----KKGIAVSG 94

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S +  I   SGL    I     I S     +L + S        S  S    
Sbjct: 95  THGKTTTTSMIADIFIDSGLDPTVI-NGGLIKSINSYAKLGSSSYFITEADESDASFLY- 152

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +       TN+  DHID++            +F + +    
Sbjct: 153 -------------------LNPNIIIVTNIESDHIDHYDNSFKKLKQTFLIFLKKITLYG 193

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+  D+    +++                   I L K         + +    K  + 
Sbjct: 194 TAIVCIDNNAICDILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNN-KKLNI 252

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSR 354
           +  +PG+    NA  A  L I  GI++ L++  L+       RFEF+G            
Sbjct: 253 ILNIPGKHNALNAAAAIALAIHEGINNDLMIASLKNFQGTCRRFEFLGFLSIDQGFDKRA 312

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DY H    L   +K IR     + +++        R         +      D+
Sbjct: 313 NCMLIDDYGHHPTELSETIKTIRISWPNKNLIMIFQPHRYTRTYNLYHDFVQTLSQ-VDV 371

Query: 413 AIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465
            ++      +E      D   +  +I      ++    N    + T I+ L   D++++ 
Sbjct: 372 LLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQ 431

Query: 466 GKGH 469
           G G+
Sbjct: 432 GAGN 435


>gi|34558797|gb|AAQ75142.1| UDP-MurNac-pentapeptide presynthetase [Alvinella pompejana epibiont
           6C6]
          Length = 475

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 8/173 (4%)

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           I     D  +  P+ G F   N  VA  +    G+    V E L+ L   P R + +   
Sbjct: 304 IEWRVGDRIYRAPILGSFNATNLTVAIKIAKLFGMSDDEVQERLKSLKQTPHRLQRIDAG 363

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADI 412
                I   +    + +    K   T + GR +++     + D+     + K A  + D+
Sbjct: 364 G-KIIIDDSFNGNIDGMIEAFKLASTHS-GRKVLITPALVEVDRELNEKVAKEANRIFDL 421

Query: 413 AIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVA 465
            I+T +       E I  + +  +             +   E     D+++ A
Sbjct: 422 VIITSELNYPIFKEYIDRDKLLKLDSKANME------KILAENTKSGDLILFA 468


>gi|296134862|ref|YP_003642104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
 gi|295794984|gb|ADG29774.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
          Length = 514

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 108/379 (28%), Gaps = 37/379 (9%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A R    +   I+A+TGT+GK++V      + +R+G S    G  S         RL   
Sbjct: 111 ALRAERGYAPKIVAITGTNGKTTVTRLTGLMLERAGWSVAVAGNISPSMLDVLQARL--- 167

Query: 166 SPIYLAKALSYLSSQGVTHVS----------VEASSHGLDQH--RLDGIKLIAGSFTNLG 213
               L  A     S    H            +  +   LD H          A  F N  
Sbjct: 168 DADDLPAAWVLELSSFQLHGMEGFAADAATVLNITQDHLDWHGDMTAYAADKANIFGNQS 227

Query: 214 RDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDA-------YSKEVMKRAHNAGCR 266
              +           A  R   +L      A     D                      R
Sbjct: 228 AQGVMVLNRDDPQVLAMQRPGRKLRRFGLSAPQQPGDWGVVREGGIDWLARALPEEDSPR 287

Query: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIG 326
                        + +       +  + ++         + G   V NAL A  L  A+G
Sbjct: 288 NRRGAAISPQGAGQGLGRPGALPEAGLQMQRLMPAEALRIQGAHNVANALAALALGDAVG 347

Query: 327 IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIV 386
              A +L  L +    P R + V        I         +    L  +         V
Sbjct: 348 APLAPMLHALREYRGEPHRMQTVAVIDGVRWIDDSKGTNVGATVAALAGME------TPV 401

Query: 387 VFGCGGD-RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNR 445
           V   GGD + Q   P+  + A   A + I         D + I AE + G+       + 
Sbjct: 402 VLIAGGDGKGQDFSPLRAQAARLRAAVLI-------GRDAQAIAAE-LQGLAPTEFTQSL 453

Query: 446 IEAIRTAIEMLNKQDVLVV 464
            +A++ A  +    D  ++
Sbjct: 454 EQAVQLAATLAKTGDAALL 472


>gi|213018738|ref|ZP_03334546.1| folylpolyglutamate synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995689|gb|EEB56329.1| folylpolyglutamate synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 433

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 120/397 (30%), Gaps = 31/397 (7%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + FL+   +      P   +A  GT+GK S  SF++ I Q +G           ++   
Sbjct: 20  IKSFLNKLGNPEKKIPPIIHIA--GTNGKGSTLSFIRYIMQAAGYKVHTYTSPHLVNFNE 77

Query: 158 QDNRLTT-PSPIYLAKALSYLSS-----------QGVTHVSVEASSHGLDQHRLDGIKLI 205
           +            L  +L                   T   +  S H  D   ++     
Sbjct: 78  RIVVAGNDIDDSELHNSLEECRIAVAEQPITLFEAATTAAFLAFSRHKADITLVEVGLGG 137

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  + I    T  A  + +             A I   +       +       
Sbjct: 138 RLDATNVIDNPILTIITSIALDHTEYLGPTVETIAGEKAGIMKPNVPCVIAPQEKSIMNT 197

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY--------NALV 317
                  +   ++         KQ   +  +       F LP     +         A  
Sbjct: 198 LEQHAINKKSPLYRGGFEWNCEKQNNRMVFQSTIQSIEFSLPSLKGDHQIINSGNAIAAC 257

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS------RGGRIYVDYAHTSNSLEM 371
           +              +    +    P R E +   +      +  ++++D AH ++   +
Sbjct: 258 SILSGKYGFNIGEEDIASGLQSTYWPARLESIKEGNLISLLPKDWQLFLDGAHNNDGARV 317

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           + K +R   +  I ++FG   +R+  +     K  + L     V  + P++   + IR  
Sbjct: 318 LAKWVRDNFAEGIYMIFGVTRNRNVAEFLEHLKPYIKLLCAVCVKSE-PKATSTDLIREG 376

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--LVVAG 466
             +     IE  +  +AI   I   + Q+V  +++ G
Sbjct: 377 AHNIGINAIECESIRDAISNHILKASIQNVKTILICG 413


>gi|170768600|ref|ZP_02903053.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
 gi|170122704|gb|EDS91635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
          Length = 491

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDNAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|134094454|ref|YP_001099529.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Herminiimonas arsenicoxydans]
 gi|133738357|emb|CAL61402.1| FolC bifunctional protein [Includes: Folylpolyglutamate synthase
           (Folylpoly-gamma-glutamate synthetase) (FPGS)
           (Tetrahydrofolate synthase)
           (Tetrahydrofolylpolyglutamate synthase); Dihydrofolate
           synthase ] [Herminiimonas arsenicoxydans]
          Length = 433

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 22/168 (13%)

Query: 313 YNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMI 372
            + L A  +        A  +     L  +PGRF+ +        I +D AH  ++   +
Sbjct: 257 SSVLAALEVLRLRLPVGAQEVRTGLALVDLPGRFQVLPGQPT---IVLDVAHNPHAAAAL 313

Query: 373 LKNIRTITSGRI-IVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTD-DNPRSEDPEKI 428
            +N+  +        VFG   D+D       G IA      D   VTD   PR+     I
Sbjct: 314 AQNLGNMGFHPYTYAVFGAMQDKDID-----GVIAHLKGQVDHWCVTDLPLPRAATAADI 368

Query: 429 RAEIIHGIPG----------FIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           R +++H                      +A   A+    + D + V G
Sbjct: 369 RDKLLHAYADLPPAVETERSIRTFATPADAFANALSRAGENDRITVFG 416


>gi|91776858|ref|YP_546614.1| UDP-N-acetylmuramate [Methylobacillus flagellatus KT]
 gi|91710845|gb|ABE50773.1| UDP-N-acetylmuramate [Methylobacillus flagellatus KT]
          Length = 460

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 112/385 (29%), Gaps = 38/385 (9%)

Query: 100 KFLSL-FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQ 158
           ++L+        G+  + +LAV GT GK++  S +  I +  GL                
Sbjct: 93  QWLAEHLLYAKQGEPEKWVLAVAGTHGKTTTTSMLAWILEYGGL---------APGFLIG 143

Query: 159 DNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSH--GLDQHRLDGIKLIAGSF--TNLGR 214
                      L                +EA  +       R   +     +    NL  
Sbjct: 144 GVPENFGVSARLPGVPRQDDKGVSPFFVIEADEYDTAFFDKRSKFVHYRPRTVILNNLEF 203

Query: 215 DHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQG 274
           DH D     +A    +       +P     +    +   + V+KR              G
Sbjct: 204 DHADIFPDLEAIE-TQFHHLVRTVPSNGLVVANGKEGSLRRVIKRGCWTPVEYF-----G 257

Query: 275 KFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
                  V A  +              +     GE    NAL A       G+     + 
Sbjct: 258 TDWQATDVDAAGSFTVRFQGKAYGRVQWQL--LGEHNRMNALAALAAARHAGVAIDAGIV 315

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGD 393
            L +   V  R E  GT   G  +Y D+AH   ++   +  +R  +   RI+ V     +
Sbjct: 316 ALSQFRSVKRRMEVRGTA-NGITVYDDFAHHPTAIATTVAGLRDKVGKARILAVLEPRSN 374

Query: 394 ---RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIR 450
                  K  + G +A   AD+     ++    D       I H    F      IEAI 
Sbjct: 375 TMKLGVMKDALPGSLAD--ADLVFCYGEHLGW-DAASALQPIQHKAAAFDSMSVLIEAIA 431

Query: 451 TAIEMLNKQDVLVVAGKG-----HE 470
                    D ++V   G     HE
Sbjct: 432 ---AEAQPGDHILVMSNGGFGGIHE 453


>gi|82701657|ref|YP_411223.1| UDP-N-acetylmuramate [Nitrosospira multiformis ATCC 25196]
 gi|82409722|gb|ABB73831.1| UDP-N-acetylmuramate [Nitrosospira multiformis ATCC 25196]
          Length = 456

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 111/371 (29%), Gaps = 45/371 (12%)

Query: 114 PENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
            + +LAV GT GK++ +S +  I + +G+   F IG        +     +    I   +
Sbjct: 102 DKWVLAVAGTHGKTTTSSMLAWILEYAGMEPGFLIGGIPQNFGISARLGNSGFFVIEADE 161

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             +    +    V                         NL  DH D  +  +        
Sbjct: 162 YDTAFFDKRSKFV---------------HFHPRTAILNNLEYDHADIFRNLEEIEQQFHH 206

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +  K        ++   + + K       R+         +      A+    +  
Sbjct: 207 LVRVVPGKGLIVSNGQEENLERVLRKGCWTPVERIGVANGWEADVLTDGAVAVSFLGESQ 266

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
            ++  +       +     +  A  A     A     A           V  R E  G  
Sbjct: 267 GTLLWELLGKHNRMNALAALAAARHAGVAVKAGIAALAE-------FRNVKRRMEVKG-I 318

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIRTITSG-RIIVVFGCGGDRDQGKRPIMG----KIAL 407
           +R   +Y D+AH   ++   +  +R+   G RII V        +     MG     +A 
Sbjct: 319 TRDITVYDDFAHHPTAIRTTIDGLRSRVKGARIIAVLEP-----RSNTMKMGVWKESLAD 373

Query: 408 DL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV- 464
            L  AD+      N   + P+ +   +      F E    I AI          D +++ 
Sbjct: 374 SLTGADVVFCYAANLGWDLPQALLP-LGEKAVAFEELDQLIAAIT---AYAQPGDHVLIM 429

Query: 465 --AGKG--HET 471
             AG G  HE 
Sbjct: 430 SNAGFGGIHEK 440


>gi|317495036|ref|ZP_07953408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella moribillum
           M424]
 gi|316914808|gb|EFV36282.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella moribillum
           M424]
          Length = 446

 Score = 43.0 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 23/277 (8%)

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+       K      TNLG  H+DYH   + Y NAK +               
Sbjct: 162 EVSSFQLE--GTKYFKPSIAVITNLGEGHLDYHGNLENYQNAKKK---------IYVNQT 210

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            DD     + ++      ++ S                  +  V              LP
Sbjct: 211 KDDFLIINIKEKEKYNFDKIKSTIIFYDTKENISTDVYIKENIVMFRETELFDSTKLKLP 270

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G   V NA+ AA +    G  +  + + L     V  R ++VG            A    
Sbjct: 271 GMHNVENAINAAIISYLKGASTDAIQQVLYNFSGVKHRLQYVGEYKGVKYYNDSKATNPV 330

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           +    L         + I++   G DR    + ++  ++     + +        E  E 
Sbjct: 331 ATTTALSGFD-----KNIILICGGKDRGIDFKELIPYLSKIKVMVVV-------GESKEL 378

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           + +  I      I+     +A + A  +    D +++
Sbjct: 379 LYSLAIQHNVKCIKAIKVADATKLASSLAKNGDTVLL 415


>gi|331681476|ref|ZP_08382113.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
 gi|331081697|gb|EGI52858.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
          Length = 491

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDKAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|215431086|ref|ZP_03429005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis EAS054]
 gi|289754267|ref|ZP_06513645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308369637|ref|ZP_07666768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
 gi|289694854|gb|EFD62283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308326954|gb|EFP15805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
          Length = 391

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 11  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 59

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 60  --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 116

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 117 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 175

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 176 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 235

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 236 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 295

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 296 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 352

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 353 LRAELRPGDVVLV 365


>gi|59712807|ref|YP_205583.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio fischeri ES114]
 gi|75353396|sp|Q5E2Q1|MURC_VIBF1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59480908|gb|AAW86695.1| UDP-N-acetylmuramate:L-alanine ligase [Vibrio fischeri ES114]
          Length = 487

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 96/282 (34%), Gaps = 18/282 (6%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
            ++ +    TN+  DH+D +             F   LP    A++  DD   +E++ + 
Sbjct: 187 HLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQV 246

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGK-DFDFLFPLPGEFQVYNALVAA 319
                             L     +  +   T+  + + D D +  +PG+    NA  A 
Sbjct: 247 SRQVITYGFSDDADV--RLINYRQVGQQSFFTVQRKDRTDLDIVLNIPGKHNALNATAAI 304

Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNI 376
            +     ++   +L  L        RF+ +G    G     +  DY H    +++ +K  
Sbjct: 305 AVATEEDVEDEAILTALLNFEGAGRRFDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAA 364

Query: 377 RTITSGRIIVVFGCGGDRDQGKRPIMGKIAL--DLADIAIVTDDNPRSEDP------EKI 428
           R   + +  +V      R    R +    A   D  D+ I+ D     E P        +
Sbjct: 365 RAGWAEKR-LVMIFQPHRYSRTRDLYDDFANVLDNVDVLIMLDVYSAGETPIAGADGRAL 423

Query: 429 RAEII-HGIPGFIEKGNRIEAIRTAIEM-LNKQDVLVVAGKG 468
              I   G    +     IEA+   +   + + D+++  G G
Sbjct: 424 CRTIRGRGKIDPVFVPT-IEALPPVLANIIQEGDLILTQGAG 464


>gi|238791171|ref|ZP_04634810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
 gi|238729304|gb|EEQ20819.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
          Length = 438

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 131/400 (32%), Gaps = 58/400 (14%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L   +    +   + +V +              ++   ++A+TG++GKS
Sbjct: 66  ADLIVASPGIALAHPALNDAAEAGVEIVGDIE--------LFCRENQAPVVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMAKAAGWQVGVGGNIGVP-------------ALTLLRQENQLV-------VL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLHASAATILNVTEDHTDRYPFGLQQYRAAK---LRVYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG         ++          +  E         L 
Sbjct: 213 ADDALTMPVRGADSRCISFGVDVGDYHLNKQQGEIWL-------RVRGEKVLNTREMKLT 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G     NAL A  L  A+GI  +  L+ L     +  RF+ V  ++    I    A    
Sbjct: 266 GRHNYTNALAALALADAVGIPRSSSLKALTTFTGLSHRFQLVFEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGG---DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
           S E  L  I+    G + ++ G  G   D     R + G       D   V       E 
Sbjct: 326 STEAALDGIQ--VEGTLHLLLGGDGKSADFSGLTRFLQG-------DHIKVYCFGRDGEQ 376

Query: 425 PEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
             ++R E+              +A+    + L   D++++
Sbjct: 377 LAELRPEVSQ------LTETMEQAMVLLAKSLAPGDMVLL 410


>gi|332701245|ref|ZP_08421333.1| FolC bifunctional protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332551394|gb|EGJ48438.1| FolC bifunctional protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 422

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 341 VVPGRFEFV-GTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKR 399
            +PGR +   G +     + +D AH    L  +L  +  +      ++F C  D++    
Sbjct: 277 FIPGRLQHCPGVSGVSPDLLLDGAHNEPGLRALLAAVEELHPRPAALLFSCLKDKELS-- 334

Query: 400 PIMGKIALDLADIAIVTDDNP---RSEDPEKIR 429
            +M  +A  L D  I+    P   RS DP +I 
Sbjct: 335 -VMAPLAARLTDGPILVTGLPGCERSRDPVEIA 366


>gi|315224116|ref|ZP_07865956.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga ochracea
           F0287]
 gi|314945849|gb|EFS97858.1| UDP-N-acetylmuramate--L-alanine ligase [Capnocytophaga ochracea
           F0287]
          Length = 450

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 6/166 (3%)

Query: 272 YQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLCIAIGIDSA 330
                   + +   +         +G  + D+    PG   + N L A  + +  G    
Sbjct: 235 EDNADYTFQNITVKNGIYHFDFHYKGGVYKDYTLLKPGRHNLLNTLAAVSMAVKAGFAPE 294

Query: 331 LVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGC 390
            +L HL     V  RF              DYAH  + +  + + +  +       +   
Sbjct: 295 KLLPHLATFKGVKRRF-SYIIKEDNFAFIDDYAHHPSEINALFQAVEEMYPHTPKTIVFQ 353

Query: 391 GG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSEDP-EKIRAEII 433
                R +       K      D  ++ D  P  E P E I ++++
Sbjct: 354 PHLFTRTRDFLDDFAKSLSQF-DDVVLLDIYPARELPIEGITSQVL 398


>gi|257126011|ref|YP_003164125.1| FolC bifunctional protein [Leptotrichia buccalis C-1013-b]
 gi|257049950|gb|ACV39134.1| FolC bifunctional protein [Leptotrichia buccalis C-1013-b]
          Length = 461

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIV 386
           ++  + +       + GR E V        +Y+D AH  +S+E  +  ++    + + I 
Sbjct: 304 NTEKIFDRTLGTLQIAGRMEKVEEIKN---VYLDVAHNEDSVEAFVDYVKKNFYNRKKIF 360

Query: 387 VFGCGGDRDQGKRPIMGKIALDLADIAIVTDDN-----PRSEDPEKIRAEIIHGIPGFIE 441
           V G   D++  K   + KI     D  I+T+ N       SE  EK   +     P  I 
Sbjct: 361 VVGFLKDKEVKKCVNLLKIVG---DNFILTEPNNEERKLDSEILEKYFEDKKIENPKNII 417

Query: 442 KG--NRIEAIRTAIEMLNKQD-VLVVAG 466
               N  +A   A+E+   +D  + V G
Sbjct: 418 ISEKNIEKAFLKALELRENEDECIFVVG 445


>gi|49475857|ref|YP_033898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           henselae str. Houston-1]
 gi|62900525|sp|Q6G2Q3|MURD_BARHE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49238665|emb|CAF27911.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Bartonella
           henselae str. Houston-1]
          Length = 466

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 91/303 (30%), Gaps = 30/303 (9%)

Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSY 176
            +A+TGT+GKS+  + +  + ++ G      G   T     +                  
Sbjct: 123 FIAITGTNGKSTTTALLAHLLEQMGYDVQMGGNIGTAILTLKPF---------------- 166

Query: 177 LSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEE 236
                     +E SS  +D      ++   G   NL  DHID H +   Y NAK  L   
Sbjct: 167 ---VKKRIYVIECSSFQIDL--APSLQPTIGLLLNLTPDHIDRHGSFAHYVNAKKNLVTG 221

Query: 237 LLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVE 296
                      A     ++++   H+          +  F           + +  +  +
Sbjct: 222 ASQAFISVDDAACQVLYRQLLHEGHHVEAVSKEHFVENGFYADGTQLFSVCQGRRHMLAD 281

Query: 297 GKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG 356
                 L    G     NAL+A     A+ I    + +HL     +  R + V       
Sbjct: 282 LASMAALR---GSHNAQNALMALATLQALKITDPHMNKHLASYQGLAHRMQQVRKMGSVL 338

Query: 357 RIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCGGDRDQ-GKRPIMGKIALDLA 410
            I    A  + +    L     I        +   +    G   +  K  ++G  A + A
Sbjct: 339 FINDSKATNAEASAPALAAFNNIFWIVGGQAKEAGIVSLRGFFHKIRKAYLIGAAAEEFA 398

Query: 411 DIA 413
            + 
Sbjct: 399 GVI 401


>gi|224532317|ref|ZP_03672949.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116]
 gi|224511782|gb|EEF82188.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116]
          Length = 468

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 52/416 (12%), Positives = 120/416 (28%), Gaps = 46/416 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IV SSAY        + +    + + +  + L   + + Y       + + G+ GK++ 
Sbjct: 75  LIVYSSAYDKDGLQVLLEAKELNIPILSYPEALGELSRKYYS------IGIAGSHGKTTT 128

Query: 130 ASFVQQICQRSG--LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            +F+  +  + G   +             +    ++    +   +   +        + +
Sbjct: 129 TAFLGIVFNKLGLNPNVIVGSSVKDFGGNSAIAGISNIFIVETCEYKKHFLHFSPNMLIL 188

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
                                 TN+  +H+D+ +  ++  +A ++    L       I  
Sbjct: 189 ----------------------TNVDYEHVDFFKNYESLEDAFLQYINNLKKNGILIINS 226

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
            D+   K   + +                  +  +   +     +               
Sbjct: 227 DDNNLLKIKRQISRKDINIFSFGSRDLSNFQISNIVVKNEYFCFSFLGLHNVELKTVLFH 286

Query: 308 GEFQVYNALVAAGLCIAIG----IDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYA 363
                  AL+A  L +        D    ++ + K +    R   V    +G     DYA
Sbjct: 287 NILNFSAALLALNLFLESNGKSIFDFEDAVKRIAKNYSGIKRRVEVIKEEKGVVYMDDYA 346

Query: 364 HTSNSLEMILKNIRTITSGRIIVV--FGCGGDRDQGKRPIMGKIALDLADIAIVTDD--- 418
           H    +   L  I+     + I++        R +       ++  D  DI I+ +    
Sbjct: 347 HHPREIRDTLLGIKNFYKNKRIILDFMPHTFTRTKEFFDDFVEVLSD-VDILILHNIYLS 405

Query: 419 -----NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
                NP  E    +   I           +  ++I     +L   D+ +  G G+
Sbjct: 406 NRENFNP-DELSINLFLNIKKINENTYFFKDVKDSINFIKSLLVSGDLFITMGAGN 460


>gi|312885129|ref|ZP_07744813.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367202|gb|EFP94770.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 489

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 72/439 (16%), Positives = 126/439 (28%), Gaps = 60/439 (13%)

Query: 50  VGNKE---DGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF--LSL 104
            G K         I  A       +V+S+A    +          I +V   R+   L+ 
Sbjct: 66  KGAKVYIGHSADNISDA-----SVVVISTAIDDHNPEIIAARQARIPIV---RRAEMLAE 117

Query: 105 FASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTT 164
                +G      +A+ GT GK++  + V QI   +GL    +     + S     RL +
Sbjct: 118 LMRFRHG------IAIAGTHGKTTTTALVTQIYSEAGLDPTFV-NGGLVKSAGASARLGS 170

Query: 165 PSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQ 224
              +      S  S                       ++ +    TN+  DH+D +    
Sbjct: 171 SRILIAEADESDASFLH--------------------LQPMVSIVTNIEADHMDTYAGDF 210

Query: 225 AYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCA 284
                    F   LP    AI+  DD   ++++ +                         
Sbjct: 211 EKLKQTFIDFLHNLPFYGQAIVCIDDPIVRDLIPKISRQ-VITYGFSEHADVRIENYHQT 269

Query: 285 IHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPG 344
            H  Q   +       D    +PG     NA  A  +     I    +L  +        
Sbjct: 270 GHQGQFTVVREGKPLLDITLNIPGRHNALNAAAAIAVATEDDIKDEAILSAMASTQGTGR 329

Query: 345 RFEFVGTNSRGG---RIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGD--RDQGKR 399
           RFE +G          +  DY H    +++ ++  R       +V+        R +   
Sbjct: 330 RFEHLGEFDTDKGQVMLVDDYGHHPTEVDVTIQAARNGWPQSRLVMIYQPHRFSRTRDLY 389

Query: 400 PIMGKIALDLADIAIVTDDNPRSEDP------EKIRAEIIHGIPGFIEKGNRIE----AI 449
                +     D+ I+ D     E P        +   I  G         R      A+
Sbjct: 390 DDFVNVLER-VDVLIMLDVYAAGEAPISGADGRALCRTIR-GRGKIDPIFVRETSELPAV 447

Query: 450 RTAIEMLNKQDVLVVAGKG 468
                +L   D+++  G G
Sbjct: 448 LA--NVLQDGDLVLTQGAG 464


>gi|319649667|ref|ZP_08003823.1| hypothetical protein HMPREF1013_00427 [Bacillus sp. 2_A_57_CT2]
 gi|317398829|gb|EFV79511.1| hypothetical protein HMPREF1013_00427 [Bacillus sp. 2_A_57_CT2]
          Length = 149

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 19  SIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYS 78
           S+  ++  E + + V+S S  +Q   I++   G    G+  + +AI  GA A +    + 
Sbjct: 14  SVKGIKDNELEFHTVASSSSALQPKGIYIPF-GEA--GN--LKEAIENGAVAALW---HE 65

Query: 79  LQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTS 124
             +  A   ++ PI   ++  K L         K  ++   +  T+
Sbjct: 66  NAETPAYTPNHFPIFYTNDLTKGLKDIMKLYIEKLNKSEEKMNTTN 111


>gi|301058489|ref|ZP_07199502.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [delta proteobacterium NaphS2]
 gi|300447411|gb|EFK11163.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [delta proteobacterium NaphS2]
          Length = 399

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 101/307 (32%), Gaps = 18/307 (5%)

Query: 106 ASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTP 165
           A R +    +  + V+GT GK++ AS V  I +++G+    +       +F  + +L   
Sbjct: 30  AIRQFAIQEKKAIVVSGTHGKTTTASLVAWILEQAGMDPGFM-IGGIPRNFESNFKLGEG 88

Query: 166 SPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
           +   +       +         +     L  +            T++  DH D ++    
Sbjct: 89  AYFVIEGDEYDSAF-------FDKGPKFLHYN------PSLVILTSIEFDHADIYRNLDH 135

Query: 226 YFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAI 285
             ++  +L   +           D    +E                   +   +     +
Sbjct: 136 VVDSFRKLIHLIPGDGYLIANGDDKIICRETKGALCKLETYGFDKANDWRLGDVGDSEDL 195

Query: 286 HNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGR 345
                +    E  +  F  PL G   V N L A  L  A+G+    +   LE    V  R
Sbjct: 196 TAFSVIRNGQEEDNKTFKTPLFGRHNVSNCLSAVALAHALGVSKGALSMALESFKGVKRR 255

Query: 346 FEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGK 404
            E +G    G  +  D+AH   ++   ++ ++      R++VVF    +    +R I   
Sbjct: 256 QEIIGKKR-GITVMDDFAHHPTAVRETVRAVKGKYPHRRLVVVFEPRSN--SSRRNIFQA 312

Query: 405 IALDLAD 411
              +  D
Sbjct: 313 QYAESFD 319


>gi|205351468|ref|YP_002225269.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226706330|sp|B5RH65|MURC_SALG2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|205271249|emb|CAR36037.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626495|gb|EGE32838.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 491

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 119/412 (28%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +     D       PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQGMPDLHVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PTPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGN 467


>gi|190571342|ref|YP_001975700.1| folylpolyglutamate synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357614|emb|CAQ55055.1| folylpolyglutamate synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 436

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 59/397 (14%), Positives = 120/397 (30%), Gaps = 31/397 (7%)

Query: 98  TRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA 157
            + FL+   +      P   +A  GT+GK S  SF++ I Q +G           ++   
Sbjct: 23  IKSFLNKLGNPEKKIPPIIHIA--GTNGKGSTLSFIRYIMQAAGYKVHTYTSPHLVNFNE 80

Query: 158 QDNRLTT-PSPIYLAKALSYLSS-----------QGVTHVSVEASSHGLDQHRLDGIKLI 205
           +            L  +L                   T   +  S H  D   ++     
Sbjct: 81  RIVVAGNDIDDSELHNSLEECRIAVAEQPITLFEAATTAAFLAFSRHKADITLVEVGLGG 140

Query: 206 AGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGC 265
               TN+  + I    T  A  + +             A I   +       +       
Sbjct: 141 RLDATNVIDNPILTIITSIALDHTEYLGPTVETIAGEKAGIMKPNVPCVIAPQEKSIMNT 200

Query: 266 RVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVY--------NALV 317
                  +   ++         KQ   +  +       F LP     +         A  
Sbjct: 201 LEQHAINKKSPLYRGGFEWNCEKQNNRMVFQSTIQSIEFSLPSLKGDHQIINSGNAIAAC 260

Query: 318 AAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS------RGGRIYVDYAHTSNSLEM 371
           +              +    +    P R E +   +      +  ++++D AH ++   +
Sbjct: 261 SILSGKYGFNIGEEDIASGLQSTYWPARLESIKEGNLISLLPKDWQLFLDGAHNNDGARV 320

Query: 372 ILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAE 431
           + K +R   +  I ++FG   +R+  +     K  + L     V  + P++   + IR  
Sbjct: 321 LAKWVRDNFAEGIYMIFGVTRNRNVAEFLEHLKPYIKLLCAVCVKSE-PKATSTDLIREG 379

Query: 432 IIHGIPGFIEKGNRIEAIRTAIEMLNKQDV--LVVAG 466
             +     IE  +  +AI   I   + Q+V  +++ G
Sbjct: 380 AHNIGINAIECESIRDAISNHILKASIQNVKTILICG 416


>gi|189439045|ref|YP_001954126.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium longum DJO10A]
 gi|229486471|sp|B3DQN2|MURC_BIFLD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189427480|gb|ACD97628.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium longum DJO10A]
          Length = 512

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 42/157 (26%), Gaps = 19/157 (12%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A              RF+  GT  +   +  DYAH    +  +L   R       I V
Sbjct: 338 SPADAANAAGTFLGAARRFQVRGTVKQ-VTVVDDYAHHPTEIAALLDAARRRYPDSTIRV 396

Query: 388 FGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSE--------DPEKIRAEIIHGIP 437
                   + K       K     AD  I+T   P  E         P  I  +   G+ 
Sbjct: 397 IFQPHLFSRTKFFAHQFAKSLAK-ADDVIITGIFPAREKQADFPDISPSTIV-DAAAGLK 454

Query: 438 G------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       +   A +      +  DV+   G G
Sbjct: 455 DASAGTWIQPVEDMCLAAKMMAMRAHHGDVIFTVGAG 491


>gi|319760617|ref|YP_004124555.1| bifunctional protein folC [Candidatus Blochmannia vafer str. BVAF]
 gi|318039331|gb|ADV33881.1| bifunctional protein folC [Candidatus Blochmannia vafer str. BVAF]
          Length = 428

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 86/366 (23%), Gaps = 13/366 (3%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
                + V GT+GK +    ++QI   +            +S   +        P  +  
Sbjct: 48  FQIYSILVGGTNGKGTTCYLLEQILLFNNFKVGLYTSPHLLSYSERIRVCGKQLPDDIHI 107

Query: 173 ALSYLSSQGVTHVSVEA------------SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYH 220
               +     + V +                  LD   L+         TN+    I   
Sbjct: 108 KSMSVVENARSGVLLTYFEFITLSALNIFKQFKLDLVILEVGLGGRLDATNIIDPDISVI 167

Query: 221 QTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLK 280
                     +      +  E   I   +       + R         +           
Sbjct: 168 TNIAIDHVDFLGDTRYKIAIEKSGIFRVNRPAIVGEIDRPLVIDEIAKNCSSILFARGRD 227

Query: 281 KVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLH 340
                            +    L   P    +     A  L I   +   +  + +E   
Sbjct: 228 WDFYCCKDNTWIWRCYSESHGLLINFPMPLSIPLENAAVVLSILHWLPFKVSRKSIEYGL 287

Query: 341 VVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRP 400
                       +    I +D  H  ++   +   +  I   R  +V    G   +    
Sbjct: 288 QNAVLLGRFQVVNYNPFIVLDVGHNPHAAAHVKNKLHPIVLKRKGIVRIVIGMLSRKDVK 347

Query: 401 IMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD 460
                  +L D+    D N       K   +   G        + I A   A++  +  D
Sbjct: 348 STVLCLNNLIDVWYCADLNTPCSANMKYVFDCFSGFD-VKYFEDIISAWYKAVDDSDIDD 406

Query: 461 VLVVAG 466
            ++V G
Sbjct: 407 CILVFG 412


>gi|227113988|ref|ZP_03827644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 438

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 128/397 (32%), Gaps = 52/397 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +L        ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGVALATPILCDAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G      G                   + L +  + L         +
Sbjct: 118 TVTTLVGEMARAAGWQVGVGGNIGLP-------------ALQLLEQPAQL-------YVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      +   A +  N+  DH + +      + A      E           
Sbjct: 158 ELSSFQLET--TSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEHADLCVV---N 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  V           + VG          +     +  + +  E         L 
Sbjct: 213 ADDALTMPVRGADARCRSFGVDVGDYH-------LNRQQGETWLRVDGERVLNTREIKLV 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A+ I  A  L  L     +P RF+     +    I    A    
Sbjct: 266 GQHNYTNALAALALADAVKIPRASALTALTSFTGLPHRFQMAFERNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  +     G + ++ G  G +     P++  +  +   +     D    +    
Sbjct: 326 STEAALSGLA--VEGSLHLLLGGDG-KSADFSPLVPYLQGEHIHLYCFGQD---GQQLAA 379

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           +R EI              +A+R   E +   D++++
Sbjct: 380 LRPEISEQTK------TMEQAMRIIAERVKPGDMVLL 410


>gi|149195309|ref|ZP_01872397.1| hypothetical protein CMTB2_00414 [Caminibacter mediatlanticus TB-2]
 gi|149134573|gb|EDM23061.1| hypothetical protein CMTB2_00414 [Caminibacter mediatlanticus TB-2]
          Length = 292

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 19/114 (16%)

Query: 1   MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60
           MK++ L+     EL+N+  I  +    + I+        +  G  F A     ED    I
Sbjct: 1   MKIETLVNLIDGELLNRPFISEVVNFTKDID-------KVSRGSCFFA-----ED-ESLI 47

Query: 61  PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHP 114
           P AI  GA AI+VS    + D           + VD+ +K +         KH 
Sbjct: 48  PFAIKNGAYAIIVSKDTKILDKE------IAWIKVDDFKKAIFKIFKYENLKHK 95


>gi|329667779|gb|AEB93727.1| UDP-N-acetylmuramate-alanine ligase [Lactobacillus johnsonii DPC
           6026]
          Length = 437

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 70/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQTA----ADQTKKALFVWGDDKRLQSLK-- 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            N             F  +         +   ++       F   L G+  + N      
Sbjct: 220 TNIPKYTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHLFGDHSILNTTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + E L        RF     +     +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMDDIKEGLLTFKGAKRRF--AEKDFGDVSVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   ++++ IP
Sbjct: 338 PDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREASGDISSEDLVNNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


>gi|326382835|ref|ZP_08204525.1| FolC bifunctional protein [Gordonia neofelifaecis NRRL B-59395]
 gi|326198425|gb|EGD55609.1| FolC bifunctional protein [Gordonia neofelifaecis NRRL B-59395]
          Length = 468

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 12/106 (11%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN-IRTITSGRIIVVFGCGGDRDQGKRPI 401
           PGR E V +      ++VD AH  +    + +  +      R++ V G  GD+D   R +
Sbjct: 323 PGRLERVRSA---PSVFVDAAHNPHGARALAQALVSEFDFRRLVGVIGVLGDKDA--RGL 377

Query: 402 MGKIALDLADIAIVT-DDNPRSED---PEKIRAEIIHGIPGFIEKG 443
           + ++   + D+ ++T + +PR+ D      I  E+  G    + + 
Sbjct: 378 LAEL-EPVLDVVVLTNNGSPRALDTDALADIANEVF-GEDRVVVEP 421


>gi|262341149|ref|YP_003284004.1| UDP-N-acetylmuramate-L-alanine ligase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272486|gb|ACY40394.1| UDP-N-acetylmuramate-L-alanine ligase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 456

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 73/268 (27%), Gaps = 12/268 (4%)

Query: 216 HIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGK 275
                  Q        +   +         I           + +      +     + +
Sbjct: 182 ACVTSFDQDHVDTYPKKETLKKAYIAFLNRIKKPYKKIFLCKEESFPLKNAIYYSVIKKE 241

Query: 276 FIHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLE 334
             +   +    N+         + +     P+PG   + N   A  +   + I+   V +
Sbjct: 242 SYYSNHLSIKGNEWYFDFHTPTETWKSLPLPIPGIHNLKNVTAALSISDYLKINQEKVRK 301

Query: 335 HLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDR 394
            L     +  R+      S+      DYAH    +  ++  ++     + I+        
Sbjct: 302 ALFLFQGIKRRYSI-HYLSKKKIYIDDYAHHPTEINALIHTVKECFPNKKILGIFQPHLF 360

Query: 395 DQGKRPI--MGKIALDLADIAIVTDDNPRSEDPEKIRA-----EIIHGIPGFIEKGNRIE 447
            + K       K    L DI I+ D  P  E P K        E I       E     +
Sbjct: 361 SRTKFFEESFAKSLEHL-DILILLDIYPARELPMKGINSNNLLEKIKMSSKNKEISTLSK 419

Query: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIV 475
            +    E     D+++  G G     I+
Sbjct: 420 VLEKIKE--KHFDIILTIGAGDIDTLII 445


>gi|237809280|ref|YP_002893720.1| UDP-N-acetylmuramate [Tolumonas auensis DSM 9187]
 gi|237501541|gb|ACQ94134.1| UDP-N-acetylmuramate [Tolumonas auensis DSM 9187]
          Length = 456

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 103/355 (29%), Gaps = 26/355 (7%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
               ++ V GT GK++ AS V  I + +G    F IG       F+          I   
Sbjct: 101 QQRWVIGVAGTHGKTTTASMVAWILEHAGLEPGFLIGGVPGNFPFSARLGKAPFFVIEAD 160

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +       +    V                 +       NL  DH D      +    + 
Sbjct: 161 EYDCAFFDKRSKFV---------------HYRPRTLIMNNLEYDHADIFPDLASIQR-QF 204

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     ++ A D    EV      +   ++          L K          
Sbjct: 205 HHLVRTVPSNGRILMPAHDPALAEVRTMGCWSEVELVEGDGANWQAKLLKEDGSAFV--- 261

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
            +       +  +   G   V+N L+A       G+ +A  +  L +  +   R E  G 
Sbjct: 262 VLLNGEVQGEVHWSGLGRHSVHNGLMAIAAARHAGVRTADGIAALSEFVMPKRRMELRG- 320

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL-- 409
              G ++Y D+AH   ++   +  +R       I+                G++   L  
Sbjct: 321 EVAGIKVYDDFAHHPTAIATTIAGLRANVGTARILAVLEPRSNTMKMGVHQGELIKSLVQ 380

Query: 410 ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
           AD A +        D  ++       IP    + +    +   +      D ++V
Sbjct: 381 ADKAYMFAPTGLGWDIHQLAQ--KAPIP-TTVQHDINHLVDMLVAEAKSGDQILV 432


>gi|261492969|ref|ZP_05989512.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261311370|gb|EEY12530.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 454

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 82/281 (29%), Gaps = 18/281 (6%)

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           S+    + +            N+  DH D     +A       L   +          AD
Sbjct: 166 SAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGCILSAIAD 225

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                 +       G          +     K       Q     +  K  +  + + G+
Sbjct: 226 QNVQDTLK-----MGNYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWSIIGK 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             ++NAL+A       G++     E L K      R E  G    G  +Y D+AH   ++
Sbjct: 281 HNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKG-EVNGITVYDDFAHHPTAI 339

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMG----KIALDL--ADIAIVTDDNPRSE 423
           E  +  +R        ++       +  K   MG    +IA  L  A+   V   +  + 
Sbjct: 340 EATIDALRGKVGKNQRILAVLEPRSNTMK---MGVHKDEIAPSLHDAEAVFVYQPDIIAW 396

Query: 424 DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +I   +           +    +   ++     D ++V
Sbjct: 397 SVSEITNVLSQPAYWSANIDDL---VDLVVKEAKPTDHILV 434


>gi|74310707|ref|YP_309126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           sonnei Ss046]
 gi|118595692|sp|Q3Z5S1|MURD_SHISS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|73854184|gb|AAZ86891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sonnei
           Ss046]
 gi|323165971|gb|EFZ51751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella sonnei
           53G]
          Length = 438

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 136/398 (34%), Gaps = 54/398 (13%)

Query: 68  AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
           A+ IV S   +    S +  ++  I +V +              +    I+A+TG++GKS
Sbjct: 66  ADLIVASPGIAQAHPSLSAAADAGIEIVGDIE--------LFCREAQAPIVAITGSNGKS 117

Query: 128 SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
           +V + V ++ + +G++    G     +    D                           +
Sbjct: 118 TVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAE--------------------CELYVL 157

Query: 188 EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
           E SS  L+      ++ +A +  N+  DH+D +      + A       +       ++ 
Sbjct: 158 ELSSFQLET--TSSLQAVAATILNVTEDHMDRYPFGLQQYRAAK---LRIYENAKVCVVN 212

Query: 248 ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
           ADDA +  +           +++G         +           +  E         L 
Sbjct: 213 ADDALTMPIRGADERCVSFGVNMGDYHLNHQQGETWL-------RVKGEKVLNVKEMKLS 265

Query: 308 GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           G+    NAL A  L  A G+  A  L+ L     +P RFE V  ++    I    A    
Sbjct: 266 GQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVG 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
           S E  L  ++    G + ++ G  G     K      +A        +  DN R     +
Sbjct: 326 STEAALNGLQ--VDGTLHLLLGGDG-----KSADFSPLAR------YLNGDNVRLYCFGR 372

Query: 428 IRAEIIHGIPGFIEK-GNRIEAIRTAIEMLNKQDVLVV 464
             A++    P   E+     +A+R     +   D++++
Sbjct: 373 DGAQLAALRPEVAEQTETMEQAMRLLAPRVQLGDMVLL 410


>gi|323464173|gb|ADX76326.1| UDP-N-acetylmuramate--alanine ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 437

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 90/279 (32%), Gaps = 25/279 (8%)

Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263
                 TN+  DH DY +      NA           +   I + DD Y    +K     
Sbjct: 163 PDYAIITNIDFDHPDYFKDVDDVINAFQ---GMAKNVKKAIIAWGDDPY----VKNIEVD 215

Query: 264 GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDF-DFLFPLPGEFQVYNALVAAGLC 322
                        ++ + +    +  +  + V+G+ +  F+ P  G+  + NAL    + 
Sbjct: 216 IPVYYYGFDTSMDVYAQNIEVTGSGTEFDVYVKGEFYGHFVSPQYGDHNILNALAVLTIS 275

Query: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSG 382
               ++   + E L     V  RF       +   +  DYAH    +   ++  R     
Sbjct: 276 YLENLNLDNIKEALITFGGVKRRFNETFA--QNQVLVDDYAHHPREISATIETARKKYPN 333

Query: 383 RIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTD--DNPRSEDPEKIRAEIIHGIPG 438
           + +V         R +        +   LAD   + D   + R    E    +++  + G
Sbjct: 334 KEVVAIFQPHTFSRTKAFLQEFADVLN-LADQTYLCDIFGSIRENQGELSINDLLKLVDG 392

Query: 439 FIEKGNRIEAIRTAIEMLNKQD--VLVVAGKGHETVHIV 475
                        ++E L K D  VL+  G G   +  +
Sbjct: 393 AHLID------ENSVEQLQKHDNAVLLFMGAG--DIQKI 423


>gi|91218296|ref|ZP_01255242.1| putative folylpolyglutamate synthase [Psychroflexus torquis ATCC
           700755]
 gi|91183571|gb|EAS69968.1| putative folylpolyglutamate synthase [Psychroflexus torquis ATCC
           700755]
          Length = 406

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 104/370 (28%), Gaps = 26/370 (7%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLT--TPSP 167
           + +     + V GT+GK SV+  +  I Q SG                +        P  
Sbjct: 41  FPEQHFKSIHVGGTNGKGSVSHMLASILQTSGYKVGLYTSPHLKDFRERIKINGQEIPEQ 100

Query: 168 IYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSF----------TNLGRDHI 217
             +     +        +S    + G+        ++               TN+    +
Sbjct: 101 EVIDFIRHHKIFLETQQLSFFEMTVGMAFDYFAKQQVDIAIIEVGLGGRLDSTNIITPLL 160

Query: 218 DYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFI 277
                      A +    E +  E   II  +        +          +        
Sbjct: 161 SVITNIGLDHMAFLGDTLEKIAGEKAGIIKQNIPVVIGETEPETKPVFLNKAKAETALIH 220

Query: 278 HLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLE 337
             K +        +  S +  +                           ++    L +++
Sbjct: 221 FAKDLKTALPDCDLKGSYQKNNIRTALQAIAVLNQIEGWA------IKKVEIENGLANVK 274

Query: 338 KLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG 397
                 GR+E +G   +   I  D  H    L +++K +   +   + +V G   D+D  
Sbjct: 275 SNTRFRGRWETLGQQPK---IIADTGHNEEGLRLVIKQLLQESYEHLHIVLGVVNDKDLD 331

Query: 398 KR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML 456
           K  P+  K AL          D PR  + E ++ +            +  +A +TA +  
Sbjct: 332 KILPLFPKEALYY----FCKPDVPRGMEAEYLQKKAQDFFLNGDVFTSVGDAFKTAKQSA 387

Query: 457 NKQDVLVVAG 466
              DV+ V G
Sbjct: 388 KASDVIFVGG 397


>gi|32490954|ref|NP_871208.1| hypothetical protein WGLp205 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173033|sp|Q8D2Z7|MURC_WIGBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25166160|dbj|BAC24351.1| murC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 475

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 140/417 (33%), Gaps = 48/417 (11%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            IVVSSA    +          I VV    +FLS      YG      + V+GT GK++ 
Sbjct: 74  IIVVSSAIKEDNLEIIYAKKLNIPVVKRA-EFLSELMRFKYG------IIVSGTHGKTTT 126

Query: 130 ASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            S +  I + +    ++  G                     L  +  Y +     +   E
Sbjct: 127 TSIISYIYKEAKLFPTYLYGG-------------------RLNNSDDYGNLGNSKYWISE 167

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
           A       +     + I    TN+ +DH++ +Q            F   +P    +++  
Sbjct: 168 ADESD---NSFLFFRPIISVVTNIEKDHLESYQGNFKKLKESFIKFLHNIPFYGYSVLCL 224

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           DD   K+++   +               I             V I  + +   F+  L G
Sbjct: 225 DDIEIKKIIPLINKKIVTYGFNRNSDFCITKFFQSNKKIIFIVYIKHQKRYLKFVSNLLG 284

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVG--------TNSRGGRIYV 360
           +    N   A  + I  GI   ++L  ++K   +  RF+F+                I  
Sbjct: 285 KHNALNITAAITIAIKEGIKYNIILNSIKKFPGINRRFDFINKYDLSNLNNKKGTITIVD 344

Query: 361 DYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDD 418
           DY H    L++ +K+++ I + R +++        + K       K+     DI ++ + 
Sbjct: 345 DYGHHPTELKLTIKSVKKIWNKRRLIMIFQPHKYTRTKYLYNYFVKVLST-VDILLIMEI 403

Query: 419 NPRSEDP------EKIRAEIIH-GIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
               E+P      + +   I+       I   N     +    +L   D+L++ G G
Sbjct: 404 YSAGENPIYKINSKNLCQSIMALKRSHVIFIPNEKFLFKKLELLLKNNDILLLQGAG 460


>gi|84515741|ref|ZP_01003102.1| folC bifunctional protein [Loktanella vestfoldensis SKA53]
 gi|84510183|gb|EAQ06639.1| folC bifunctional protein [Loktanella vestfoldensis SKA53]
          Length = 413

 Score = 43.0 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 23/165 (13%)

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----RGGRIYVDYAHTSNSL 369
              AA   +     +    E        P R E +   +         +++D  H   + 
Sbjct: 245 NAGAAIAALRHLGCNEAACEAAITRAYWPARMEKLTKGALVDLAAPAELWLDGGHNPAAG 304

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPR------ 421
             +   +R  +     ++ G    +D     RP+ G IA  L  ++I     P       
Sbjct: 305 VALAATLRAQSPRPTHLICGMLNTKDIAGYLRPLAG-IAQSLTAVSI-----PGEAATIP 358

Query: 422 SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           +ED  +  A++           + I AIR A         +++ G
Sbjct: 359 AEDTARFAADVGLPASTAASVQDAITAIRAAHPQAR----ILICG 399


>gi|239621192|ref|ZP_04664223.1| folylpolyglutamate synthase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|322691440|ref|YP_004221010.1| folylpolyglutamate synthase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|239515653|gb|EEQ55520.1| folylpolyglutamate synthase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|320456296|dbj|BAJ66918.1| folylpolyglutamate synthase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 534

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 128/406 (31%), Gaps = 56/406 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------------------ 151
           + +    ++ +TGT+GK S A   + IC+  G+ +                         
Sbjct: 34  HPEQSFRVIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEKINERIAIDGQQLSDD 93

Query: 152 ----------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                                 Q     +   +  A A+   +   V    VE    GL 
Sbjct: 94  DFIDIWDQTKDLVALVDAKMEEQGKPKMSFFEVLTAMAIWKFADTPVDVAIVEVGMGGL- 152

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
               + +   A     +  DH+ +          +     +            ++A    
Sbjct: 153 WDATNVLNADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEEAVMPI 212

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + + A      ++  GY+                  T +   +          +     A
Sbjct: 213 LAEAAERNHAMLVRDGYEMTASDRMAAVGGQVATLTTPNGTYEGVPIAKFGEHQAHNALA 272

Query: 316 LVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            +AA   +             E L    +PGR E + T+     I +D  H  N+ E + 
Sbjct: 273 ALAASEVVIPVNGPLDGDLVAEALSSVKIPGRIEQIRTSPT---IILDGGHNVNAAEALR 329

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKI 428
           K I      +  +V      RD+     +G +   +    +VT+++ R     +++ EKI
Sbjct: 330 KAIEESYDFKQ-LVGVVAMMRDKQVEEYLG-VLEPILSSVVVTENSWRERVMPADELEKI 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
             ++  G    I++ N  +AI+TA+ M++ +D         +++ G
Sbjct: 388 AVDVF-GRDRVIKEANLPDAIQTAVNMVDAEDELGVGYGHGVLICG 432


>gi|219682144|ref|YP_002468528.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254765988|sp|B8D7B8|MURC_BUCAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219621877|gb|ACL30033.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 484

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 151/484 (31%), Gaps = 83/484 (17%)

Query: 4   QDLIYKD-FPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQ 62
            DL+      +LIN  +   +Q  E+ I  V                         FI  
Sbjct: 48  SDLLESLMIKKLINLGATIYLQHSEKNIKNV------------------------DFI-- 81

Query: 63  AIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTG 122
            I     AI    + + ++  A  + N PIL     R  +            +  +AV+G
Sbjct: 82  -IKS--SAI----SSNNKEILAAKKRNIPIL----LRAEMIEILMSF-----KKGIAVSG 125

Query: 123 TSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGV 182
           T GK++  S +  I   SGL    I     I S     +L + S        S  S    
Sbjct: 126 THGKTTTTSMIADIFIDSGLDPTVI-NGGLIKSINSYAKLGSSSYFITEADESDASFLY- 183

Query: 183 THVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKES 242
                              +       TN+  DHID++             F + +    
Sbjct: 184 -------------------LNPNIIIVTNIESDHIDHYDNSFKKLKQTFLTFLKKITLYG 224

Query: 243 PAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF 302
            AI+  D+    +++                   I L K         + +    K  + 
Sbjct: 225 TAIVCIDNNAICDILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNN-KKLNI 283

Query: 303 LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT--------NSR 354
           +  +PG+    NA  A  L I  GI++ L++  L+       RFEF+G            
Sbjct: 284 ILNIPGKHNALNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQGFDKRA 343

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADI 412
              +  DY H    L   +K IR     + +++        R         +      D+
Sbjct: 344 NCMLIDDYGHHPTELSETIKTIRISWPNKNLIMIFQPHRYTRTYNLYHDFVQTLSQ-VDV 402

Query: 413 AIVTDDNPRSE------DPEKIRAEIIHGIPGFIE-KGNRIEAIRTAIEMLNKQDVLVVA 465
            ++      +E      D   +  +I      ++    N    + T I+ L   D++++ 
Sbjct: 403 LLILHVYSANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQ 462

Query: 466 GKGH 469
           G G+
Sbjct: 463 GAGN 466


>gi|126729944|ref|ZP_01745756.1| Folylpolyglutamate synthetase [Sagittula stellata E-37]
 gi|126709324|gb|EBA08378.1| Folylpolyglutamate synthetase [Sagittula stellata E-37]
          Length = 423

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 112/406 (27%), Gaps = 33/406 (8%)

Query: 85  TIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSS 144
            +      LV+D   + L           P  ++ + GT+GK S  + ++   +  G S 
Sbjct: 14  ALHPKVIDLVLDRVWRLLEALGHPERNLPP--VIHLAGTNGKGSTQAMIRAGLEAEGKSV 71

Query: 145 FQIGPTSTISSFAQDNRLTTPSPIY-----LAKALSYLSSQGVTHVSVEASSHGLDQHRL 199
                   +    +     T          L +         +T+  +   +  L   R 
Sbjct: 72  HAYTSPHLVRFHERIRLAGTLIAEDALAEVLDECEDANGGAPITYFEITTCAALLAMART 131

Query: 200 DGIKL-------IAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAY 252
                            TN+ +       T  +  +               A I      
Sbjct: 132 PADFTLLETGLGGRLDATNVVKRPELTIITPISMDHENFLGDTLAKIAGEKAGILKGGVP 191

Query: 253 SKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQV 312
                +               G  +          +++  +  + +      PLP     
Sbjct: 192 CVVGPQSDEAMEVIEARAQALGAPLLAYGQHWHAWEERGRLVFQDETGLLDLPLPNLPGA 251

Query: 313 YN--ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS-----RGGRIYVDYAHT 365
           +      AA   +          +        P R + +          G  +++D  H 
Sbjct: 252 HQIQNAGAALAALRHLGSGEGAFDAAVSQAFWPARMQRLRKGPDLDGLPGIELWLDGGHN 311

Query: 366 SNSLEMILKNIRTITSGRIIVVFGCGGDRD-QGKRPIMGKIALDLADIAI----VTDDNP 420
             + E I  ++  +      +V G    +D +G    +   A  L  ++I    +T    
Sbjct: 312 PAAGEAIAAHLARLPERPTWLVCGMLNTKDARGFLRPLATCAKGLLAVSIPGEAITLP-- 369

Query: 421 RSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
            +E+  ++ AE+ H            +AIR  I  ++    +V+ G
Sbjct: 370 -AEETARMAAEVGH---DVRVCAGFTDAIRQ-IGEIDPAARVVICG 410


>gi|23335451|ref|ZP_00120687.1| COG0773: UDP-N-acetylmuramate-alanine ligase [Bifidobacterium
           longum DJO10A]
          Length = 505

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 42/157 (26%), Gaps = 19/157 (12%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A              RF+  GT  +   +  DYAH    +  +L   R       I V
Sbjct: 331 SPADAANAAGTFLGAARRFQVRGTVKQ-VTVVDDYAHHPTEIAALLDAARRRYPDSTIRV 389

Query: 388 FGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSE--------DPEKIRAEIIHGIP 437
                   + K       K     AD  I+T   P  E         P  I  +   G+ 
Sbjct: 390 IFQPHLFSRTKFFAHQFAKSLAK-ADDVIITGIFPAREKQADFPDISPSTIV-DAAAGLK 447

Query: 438 G------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       +   A +      +  DV+   G G
Sbjct: 448 DASAGTWIQPVEDMCLAAKMMAMRAHHGDVIFTVGAG 484


>gi|194364587|ref|YP_002027197.1| FolC bifunctional protein [Stenotrophomonas maltophilia R551-3]
 gi|194347391|gb|ACF50514.1| FolC bifunctional protein [Stenotrophomonas maltophilia R551-3]
          Length = 423

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 348 FVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIA 406
                  G +I VD  H   +   + + ++     GR + V+    D+D         + 
Sbjct: 289 LQAFERDGVQIRVDVGHNPQAAGQLARALKAEAVPGRTLAVYAALQDKDA------AGVV 342

Query: 407 LDLADIA----IVTDDNPRSEDPEKIRAEIIHGIPGFIEKGN-RIEAIRTAIEMLNKQDV 461
             L D+     + + D PR +   +++A +        +  +   +A+   +    + D 
Sbjct: 343 QALQDVVGEWTLASLDGPRGQSAAQLQARLADTAAATAQLSDSVEQALVQVLAQARRGDR 402

Query: 462 LVVAG 466
           ++V G
Sbjct: 403 VLVFG 407


>gi|227547589|ref|ZP_03977638.1| folylpolyglutamate synthase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227211844|gb|EEI79740.1| folylpolyglutamate synthase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 565

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 128/406 (31%), Gaps = 56/406 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------------------ 151
           + +    ++ +TGT+GK S A   + IC+  G+ +                         
Sbjct: 65  HPEQSFRVIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEKINERIAIDGQQLSDD 124

Query: 152 ----------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                                 Q     +   +  A A+   +   V    VE    GL 
Sbjct: 125 DFIDIWDQTKDLVALVDAKMEEQGKPKMSFFEVLTAMAIWKFADTPVDVAIVEVGMGGL- 183

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
               + +   A     +  DH+ +          +     +            ++A    
Sbjct: 184 WDATNVLNADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEEAVMPI 243

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + + A      ++  GY+                  T +   +          +     A
Sbjct: 244 LAEAAERNHAMLVRDGYEMTASDRMAAVGGQVATLTTPNGTYEGVPIAKFGEHQAHNALA 303

Query: 316 LVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            +AA   +             E L    +PGR E + T+     I +D  H  N+ E + 
Sbjct: 304 ALAASEVVIPVNGPLDGDLVAEALSSVKIPGRIEQIRTSPT---IILDGGHNVNAAEALR 360

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKI 428
           K I      +  +V      RD+     +G +   +    +VT+++ R     +++ EKI
Sbjct: 361 KAIEESYDFKQ-LVGVVAMMRDKQVEEYLG-VLEPILSSVVVTENSWRERVMPADELEKI 418

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
             ++  G    I++ N  +AI+TA+ M++ +D         +++ G
Sbjct: 419 AVDVF-GRDRVIKEANLPDAIQTAVNMVDAEDELGVGYGHGVLICG 463


>gi|169829402|ref|YP_001699560.1| folylpolyglutamate synthase [Lysinibacillus sphaericus C3-41]
 gi|168993890|gb|ACA41430.1| Folylpolyglutamate synthase [Lysinibacillus sphaericus C3-41]
          Length = 426

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 12/139 (8%)

Query: 330 ALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRT-ITSGRIIVVF 388
              + H        GRFE          I +D AH S     +++ ++          V+
Sbjct: 281 DQSIRHGLLYAHWAGRFEQWPQK-----IVLDGAHNSEGTAALIQTLKNVFPKSHYRFVY 335

Query: 389 GCGGDRDQGKR-PIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIE 447
               D+D      +M  +A         T  N  +  P K  + I+          + +E
Sbjct: 336 AALADKDHANSIALMDDVATS----ITFTQINLPNAMPAKDLS-ILSTNANKSYHEDWME 390

Query: 448 AIRTAIEMLNKQDVLVVAG 466
           +++T +    ++DV+V+ G
Sbjct: 391 SVQTVLRERAEEDVVVITG 409


>gi|94495050|ref|ZP_01301631.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
 gi|94425316|gb|EAT10336.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
          Length = 1025

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 131/417 (31%), Gaps = 49/417 (11%)

Query: 68   AEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKS 127
            A  I+ S+  +  D      +  P+L V N    +              ++ VTG++GK+
Sbjct: 621  ARGIITSAPQAFAD------AELPVLSVRNNGDAVLALGRYARSMMRGKLIGVTGSAGKT 674

Query: 128  SVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSV 187
            ++ + + Q  +  G         +       +                   +    HV +
Sbjct: 675  TMVAMLAQALRPWGKVGTSRLNANLPHGIGWNL---------------ASIAWDTPHVVM 719

Query: 188  EASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIY 247
            E +   + Q+     +     FTN+   H+++H           R    +    +     
Sbjct: 720  ELAIGRMKQNAALA-RPDVAVFTNIAAAHLEFHHDLA----TVARRKSAIFEGMAAGATA 774

Query: 248  ADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLP 307
              +A   E+ +    A  R L++   G+               +          +    P
Sbjct: 775  ILNADMAELARVRALAMARELNIVSYGEAPQADIRLISRKGNFLEAETPSGRMGYHLATP 834

Query: 308  GEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRI-YVD--YAH 364
            G     N+L       A+ +     +  LE    + GR +      +G RI  +D  Y  
Sbjct: 835  GRHMAVNSLAVLATLHALSLQPHRGMTALEDFRPLAGRGDVAALCVQGKRILLIDEAYNA 894

Query: 365  TSNSLEMILKNIRTITSGRIIVVFGCG---GDRDQGKRPIMGKIALDLADIAIVTDDNPR 421
               S+   L+ +     GR + + G     G   +G    +  +A  L+   +    +  
Sbjct: 895  NPASMAAALELLGAQAGGRRVAILGEMLELGPGAEGYHADLAPLATGLSIDVV----HAV 950

Query: 422  SEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAI--EMLNKQDVLVVAGKG------HE 470
                 +  A++    P          A   A+  E++   D+++V  KG      HE
Sbjct: 951  GPLYARFCADLP---PRHRGIHAPDLATLHALWPELIRDGDIVLV--KGSHGSGVHE 1002


>gi|107021687|ref|YP_620014.1| UDP-N-acetylmuramate [Burkholderia cenocepacia AU 1054]
 gi|116688633|ref|YP_834256.1| UDP-N-acetylmuramate [Burkholderia cenocepacia HI2424]
 gi|105891876|gb|ABF75041.1| UDP-N-acetylmuramate [Burkholderia cenocepacia AU 1054]
 gi|116646722|gb|ABK07363.1| UDP-N-acetylmuramate [Burkholderia cenocepacia HI2424]
          Length = 461

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 107/356 (30%), Gaps = 24/356 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 103 KWVLAVAGTHGKTTTSSMLAWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 162

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +L      NL  DH D      A       L
Sbjct: 163 DTAFFDKRSKFV---------------HYRLRTAVLNNLEFDHADIFPDLAAIETQFHHL 207

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +            DA  + + +   +   R    G          V         + 
Sbjct: 208 VRTVPGVGRIVTNGRSDALERVLARGCWSEVERFGVDGGWQALPAEDGVPVDERFAVYSH 267

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +    +  +     G+    NAL A      +G+  A   E L     V  R E  G + 
Sbjct: 268 AGRVGEVAWQVQ--GDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRMEVRG-SV 324

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLAD 411
            G  +Y D+AH   +++  +  +R     +   +      R    K  +M  ++   LAD
Sbjct: 325 DGVTVYDDFAHHPTAIDTTIAGLRARIGRQNARILAVLEPRSNTMKLGVMKSQLPASLAD 384

Query: 412 I-AIVTDDNPRSEDPE--KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
              +     P   D     +   +           +    ++  +E     D ++V
Sbjct: 385 ADLVFGYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLV 440


>gi|227885004|ref|ZP_04002809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|227837833|gb|EEJ48299.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|307551935|gb|ADN44710.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli ABU 83972]
          Length = 491

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHGRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +Q            F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +  + +        PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ +  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQ-VDTLLMLEVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRGRGKIDPILVPDSAQVAEMLAPVLTGNDLILVQGAGN 467


>gi|156741086|ref|YP_001431215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|189082915|sp|A7NI97|MURD_ROSCS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156232414|gb|ABU57197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 472

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 82/291 (28%), Gaps = 23/291 (7%)

Query: 187 VEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAII 246
           +E SS  L+     G+       T +  DH+D H T +AY  AK  ++    P +   + 
Sbjct: 164 LELSSFVLEGLGEAGLSPKIACITTIAPDHLDRHGTMEAYIQAKEEIWRHQRPGDPVVL- 222

Query: 247 YADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPL 306
            AD    + +       G  V   G +G  ++  K       +   +    +  +     
Sbjct: 223 CADSPIMRAMAVVDRRPGDMVWFAGAKGSDVYRLKGDRRAFWRGDELIWHDRSTEGSITH 282

Query: 307 PGEFQVYNALVAAGLCIAIGID-----------SALVLEHLEKLHVVPGRFEFVGTNSRG 355
                  +  +     +A                  +   +     V  R EFV      
Sbjct: 283 TVICTRDDVRLPGAHNLANIAAATAAACAFGIAPEHIRRAVRAFAGVEHRLEFVRELDGV 342

Query: 356 GRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIV 415
             I         +       I  + +    +V   GG           +     A   I+
Sbjct: 343 CYI------NDTAATAPEAAIAALRTFDAPIVLIAGGADKNLPFDAFAREIAQRASAVIL 396

Query: 416 --TDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
                 P+  D           +       +  +A+ TA  +    +++++
Sbjct: 397 LQGSATPKLLDA---LRAARASVAIHGPYDDFEQALDTARRIAAPGEIVLL 444


>gi|332975055|gb|EGK11961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella kingae ATCC
           23330]
          Length = 451

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 96/356 (26%), Gaps = 29/356 (8%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAK 172
           H   +L + GT GK++ AS +  + + +G                   +  + S      
Sbjct: 103 HKMWVLGIAGTHGKTTTASMLAWVLEYAGY--------GAGFLIGGVPQNFSVSARLPQN 154

Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232
             ++   +   + +         + +    +       NL  DH D      A       
Sbjct: 155 DSAFFVIEADEYDTAFFD----KRSKFVHYRPRTAILNNLEYDHADIFPDLHAIQTQFHH 210

Query: 233 LFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVT 292
           L   +  +        +++  + + +          +                 + +   
Sbjct: 211 LVRTVPNQGLIVANGREESLHETIERGCWTPIEWFGNQAGWQIANVGADGSFDVHFKGEH 270

Query: 293 ISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTN 352
           +     +              NAL        +G+      E L +   V  R E  G  
Sbjct: 271 VGHIAWELLGEHNR------MNALAVIAAARHVGVSVQAACEALSQFKNVKRRMEIKGVE 324

Query: 353 SRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRPIMGKIAL---D 408
           + G  +Y D+AH   ++   +  +R  + + RII V     +    K   M         
Sbjct: 325 N-GVTVYDDFAHHPTAITTTVAGLRDKVGAARIIAVLEPRSN--TMKLGTMKTALSGSLK 381

Query: 409 LADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVV 464
            AD                +   ++          +  E +   +      D ++V
Sbjct: 382 NADQVFCYTGGVDW----DVADALVPLGNKLHVGKDFDEFVNAIVAAAKSGDHILV 433


>gi|320546894|ref|ZP_08041197.1| tetrahydrofolate synthase [Streptococcus equinus ATCC 9812]
 gi|320448489|gb|EFW89229.1| tetrahydrofolate synthase [Streptococcus equinus ATCC 9812]
          Length = 429

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 23/304 (7%)

Query: 163 TTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQT 222
           T    I +     +     V    +EA   GL     +  K +A    ++G DH +    
Sbjct: 131 TEFEVITVLMFEYFGHMHPVDIAIIEAGMGGL-YDSTNVFKALAVVCPSIGLDHQNVLGQ 189

Query: 223 QQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKV 282
             A   A+     +       A    +D     V K                   +    
Sbjct: 190 TYAEIAAQKVGVLKERVPFIFATER-EDVRHVFVNKAHDCDSRLFEFSKDFYAQENENGF 248

Query: 283 CAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV 342
                +    + +       +              A  L       +  ++    +    
Sbjct: 249 DYQGLENLKNVKLSMPGKHQVSNASL-----AITAALLLKKDYPKVTNDIIRKGLEETHW 303

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIM 402
            GR E +  N     + +D AH + S++ ++  ++      + ++F     +  G    M
Sbjct: 304 VGRTELMFPN-----VMIDGAHNNESVKALVDVMQKYKDKNLHILFAAIDTKPIG---SM 355

Query: 403 GKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVL 462
            K+   LAD+ + T     S   EK           + +  N  E I   I + +++D  
Sbjct: 356 LKLLSQLADVDVTTFIYHNSLPLEK-------YPSNYYKVANWKEWIDK-INLNSQEDFY 407

Query: 463 VVAG 466
           ++ G
Sbjct: 408 LITG 411


>gi|326799629|ref|YP_004317448.1| FolC bifunctional protein [Sphingobacterium sp. 21]
 gi|326550393|gb|ADZ78778.1| FolC bifunctional protein [Sphingobacterium sp. 21]
          Length = 434

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 50/399 (12%), Positives = 120/399 (30%), Gaps = 32/399 (8%)

Query: 96  DNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS---- 151
            +     +L A+    +     + + GT+GK S +  +  + Q +G  +           
Sbjct: 27  KDLTNIRALCAALENPEKAFKAVHIAGTNGKGSSSHMLAAVLQTAGYRTGLYTSPHLLDF 86

Query: 152 --------------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASS 191
                                 +    +    +   + +A A  Y +   V    +E   
Sbjct: 87  RERIKINGVLIPQAYVIDFVKNNQSLIETIQPSFFEVTVAMAFRYFADMHVDIAVIETG- 145

Query: 192 HGLDQHRLDGIKLIAGSFTNLGRDHIDY-HQTQQAYFNAKMRLFEELLPKESPAIIYADD 250
            G      + I  IA   TN+G DH++    +       K  + +   P        A +
Sbjct: 146 LGGRLDSTNIISPIATLITNIGYDHMNMLGNSLAEIAYEKAGIIKSHTPIVISERQQAIE 205

Query: 251 AYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEF 310
                  +                +     +   +    +     E  +         + 
Sbjct: 206 HVFINRAQELVAPIFFASDEWKIDEIAVDTEFQYLKAIPEKEKPFETLELCLDLRGSYQQ 265

Query: 311 QVYNALVA---AGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSN 367
           +    +++       I   +    +++ LE +  + G        S       D  H  +
Sbjct: 266 KNLPGVLSTIRILKEIGFTVSENELVDGLEGVQKLTGLMGRWQRLSAQPLTICDTGHNED 325

Query: 368 SLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEK 427
             + ++KNI      ++ +V G   D+D      M  +    A+    +    R+     
Sbjct: 326 GWKEVIKNITRTPFEKLHMVIGVMRDKDLEH---MLTLLPKEANFYFCSPAFQRALPAID 382

Query: 428 IRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAG 466
           ++++  +         +   A+ TA ++ +K+D++ + G
Sbjct: 383 LQSQAANYGLVGEAYDSVQHAVETAGQIASKEDLIFIGG 421


>gi|289663636|ref|ZP_06485217.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289671017|ref|ZP_06492092.1| UDP-N-acetylmuramate--L-alanine ligase [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 477

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 137/431 (31%), Gaps = 52/431 (12%)

Query: 67  GAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKF-LSLFASRLYGKHPENILAVTGTSG 125
           G + +VVSSA    +       +  I +    R   L+       G      +AV GT G
Sbjct: 74  GTDCVVVSSAIRDDNPELMEARSQRIPI--MPRAAMLAELMRFRRG------IAVAGTHG 125

Query: 126 KSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTH 184
           K++  S    +    G   +F IG                     L  A +     G   
Sbjct: 126 KTTTTSLAAAVLSEGGLDPTFVIGG-------------------QLLAAGANAKLGGGQW 166

Query: 185 VSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPA 244
           +  EA        RL+ +       TN+  DH++ +    A   A    F + LP    A
Sbjct: 167 LVAEADESDGSFLRLNPLM---AVITNIDSDHLENYGNDFARIQAAFAEFLQRLPFYGLA 223

Query: 245 IIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDF-L 303
           ++  DD     +  +       +     +   +  + V     + + T+ +         
Sbjct: 224 LLCIDDPEVAALAGKTPRH--VMSYGMSENADVRAEDVVQDGPRMRFTLRLPEGTTTPVT 281

Query: 304 FPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRF----EFVGTNSRGGRIY 359
             LPG   V NAL AA +   +G+ S  +   LE    +  RF    E   +     R+ 
Sbjct: 282 LALPGRHNVLNALAAAAIGWQLGVASETIARALENFAGIGRRFNDLGEVTTSTGARVRVV 341

Query: 360 VDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLA--DIAIVTD 417
            DY H    LE +    R     + +VV      R    R      A  L+  D  ++++
Sbjct: 342 DDYGHHPRELEAVFAAARGGWPDKRLVV-AFQPHRYSRTRDQFDAFAAVLSTVDALVLSE 400

Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEML-------NKQDVLVVAGKGHE 470
             P  E P                  +    +     +           D+L++ G G  
Sbjct: 401 VYPAGEAPIPGADSRALARAIRARGRSEPVVVGQIAGLAEVLPDVLQDGDLLLMMGAGDI 460

Query: 471 TV---HIVTNG 478
                HI+ NG
Sbjct: 461 GYVAQHIINNG 471


>gi|225351424|ref|ZP_03742447.1| hypothetical protein BIFPSEUDO_03019 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157768|gb|EEG71051.1| hypothetical protein BIFPSEUDO_03019 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 292

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 70/199 (35%), Gaps = 15/199 (7%)

Query: 17  QLSIFPMQWRERKINEVS--SDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVS 74
              + P    E  +  ++   DS  ++ G +F  +   + D    + Q  A GA   VV 
Sbjct: 22  GFDLDPAFATEVTVTSIADDIDS--VRPGALF--MPSMQVD-EQQLRQVQALGAYGAVVP 76

Query: 75  SAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPEN--ILAVTGTSGKSSV--A 130
            A   +    T     P++  + T + L   AS + G   ++  + AV G++ ++     
Sbjct: 77  HALRGK----TDGVQIPLIYAEPTAQQLGKLASEMAGSPSDSLAVFAVAGSNTQTVEQGV 132

Query: 131 SFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEAS 190
             +       G     I   ++ S     +     S + + + ++  +  G   V +  S
Sbjct: 133 RDLADFLHMLGNPVGVISAGNSQSLERFLDLNYPLSILDVQRTMAVCAEDGAAAVILALS 192

Query: 191 SHGLDQHRLDGIKLIAGSF 209
              L+   L  + +     
Sbjct: 193 EETLNDDALQSVNVDVLGC 211


>gi|326562098|gb|EGE12426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis 7169]
 gi|326567059|gb|EGE17181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC1]
 gi|326572224|gb|EGE22219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC8]
          Length = 466

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 119/387 (30%), Gaps = 32/387 (8%)

Query: 71  IVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLF-ASRLYGKHPENILAVTGTSGKSSV 129
           I++S   + +  S        I V+ + + F+    A  L       I+A+TG++ KS+V
Sbjct: 65  IIISPGINPRTPSIVAAKAQGIPVISDVQLFIDTLKARDLTQATNTPIIAITGSNAKSTV 124

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
            + V ++ + +G+     G   T               + L    +         V +E 
Sbjct: 125 TTLVGEMAKHAGMIVGVGGNIGTP-------------ALELLTIQNMDL------VVLEL 165

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
           SS  L+   +  +     +  NL  DH+D H     Y   K+R+FE              
Sbjct: 166 SSFQLE--HISNLAAQGATILNLSADHLDRHDGMVDYLAQKLRIFENCQTAIICQDDANL 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
                  +         + +            +    +   +              + G+
Sbjct: 224 AKQCLTTLTSVAPNHTIITTNSLLSHQTADFYLFDDGDGMALYHQKNKLLPIHQLKIKGK 283

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
             + NAL A  L  A  +    +L+ L+    +P R E++                  S 
Sbjct: 284 HNLLNALSALALGTAANLPMDAMLDTLKTFKGLPHRCEYIDDIDSKAYFNDSKGTNIGST 343

Query: 370 EMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIR 429
              +  + T+     + +   G  + Q     +    +   D   +       +D   I 
Sbjct: 344 IAAIDGLGTVYGISSLALILGGLGKGQDF-SELSAYVMQWVDSVYLI-----GQDAPIIE 397

Query: 430 AEIIHG----IPGFIEKGNRIEAIRTA 452
            +++ G         + G    A+  A
Sbjct: 398 QDLLKGDAHLASKIYQVGTLDRAVLAA 424


>gi|325282342|ref|YP_004254883.1| FolC bifunctional protein [Deinococcus proteolyticus MRP]
 gi|324314151|gb|ADY25266.1| FolC bifunctional protein [Deinococcus proteolyticus MRP]
          Length = 431

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPI 401
            PGR E++    +G    +D AH  +  + +   +  +    + +VFG   D+       
Sbjct: 282 WPGRLEYL--TVQGQGWLLDGAHNPDGAQALTDTLDALDLRPVRLVFGASADKALE---E 336

Query: 402 MGKIALDLADIAIVTDD--NPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTA 452
           M +I        ++T    +PR+ +P  +R           E  + ++A+  A
Sbjct: 337 MVQILAPAVSDVVLTQAQWSPRAAEPGTLRPLWEAQGIPVREAASPVQALELA 389


>gi|311694715|gb|ADP97588.1| bifunctional protein includes folylpolyglutamate synthase (FPGS)
           dihydrofolate synthase [marine bacterium HP15]
          Length = 440

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 343 PGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI--TSGRIIVVFGCGGDRDQGKRP 400
           PGRFE VG+      I++D  H  ++   +   +  +     R+  V+G   D+D     
Sbjct: 300 PGRFERVGSAPD---IFLDVGHNPHAAGWLSGQLSQLKSPGRRVHGVYGALADKDV---A 353

Query: 401 IMGKIALDLADIAIVTD-DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQ 459
            +G+  +D+ D   +     PR    + ++A +           +  EA+ +A+ + +  
Sbjct: 354 GVGRAMVDVVDAWYLAGLKVPRGLSGQDLQARLADSGIQATAFESVREALVSALAVADPN 413

Query: 460 DVLVVAG 466
           D++VV G
Sbjct: 414 DLVVVFG 420


>gi|317483072|ref|ZP_07942073.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915478|gb|EFV36899.1| UDP-N-acetylmuramate-alanine ligase [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 512

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 42/157 (26%), Gaps = 19/157 (12%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A              RF+  GT  +   +  DYAH    +  +L   R       I V
Sbjct: 338 SPADAANAAGTFLGAARRFQVRGTVKQ-VTVVDDYAHHPTEIAALLDAARRRYPDSTIRV 396

Query: 388 FGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSE--------DPEKIRAEIIHGIP 437
                   + K       K     AD  I+T   P  E         P  I  +   G+ 
Sbjct: 397 IFQPHLFSRTKFFAHQFAKSLAK-ADDVIITGIFPAREKQADFPDISPSTIV-DAAAGLK 454

Query: 438 G------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       +   A +      +  DV+   G G
Sbjct: 455 DASAGTWIQPVEDMCLAAKMMAMRAHHGDVIFTVGAG 491


>gi|307731024|ref|YP_003908248.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1003]
 gi|307585559|gb|ADN58957.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1003]
          Length = 464

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 108/356 (30%), Gaps = 24/356 (6%)

Query: 115 ENILAVTGTSGKSSVASFVQQICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKA 173
           + +LAV GT GK++ +S +  + + +G    F IG        +     ++   I   + 
Sbjct: 104 KWVLAVAGTHGKTTTSSMLTWLLEDAGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADEY 163

Query: 174 LSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRL 233
            +    +    V                 +       NL  DH D      A       L
Sbjct: 164 DTAFFDKRSKFV---------------HYRPKTAVLNNLEFDHADIFPDLAAIETQFHHL 208

Query: 234 FEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTI 293
              +           +DA  + + +   +   R    G          V           
Sbjct: 209 IRTVPRIGRVVTNGREDALERVLTRGCWSEVERFGVQGGWETQPAEDGVPVDERFAVYHN 268

Query: 294 SVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNS 353
           +      ++     GE    NAL A      +G+  A     L     V  R E  G + 
Sbjct: 269 AERVGVVEWQVQ--GEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVKRRMEVRG-SV 325

Query: 354 RGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQG-KRPIM-GKIALDLAD 411
            G  +Y D+AH   ++E  +  +R         +      R    K  +M  ++   LAD
Sbjct: 326 DGVTVYDDFAHHPTAIETTVAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPASLAD 385

Query: 412 I-AIVTDDNPRSEDPEKI-RAEIIHGIPGFIEKGNRIEA-IRTAIEMLNKQDVLVV 464
              +     P   D       E +  +    +  + ++A ++  +      D ++V
Sbjct: 386 ADLVFGYGAPSGRDALGWNLGEALAPLGNKAQAFDNLDALVKAVVHAARPGDQVLV 441


>gi|213691751|ref|YP_002322337.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|254765983|sp|B7GQ79|MURC_BIFLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|213523212|gb|ACJ51959.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457845|dbj|BAJ68466.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 512

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 43/157 (27%), Gaps = 19/157 (12%)

Query: 328 DSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVV 387
             A   +          RF+  GT  +   +  DYAH    +  +L   R       I V
Sbjct: 338 SPADAAKAAGTFLGAARRFQVRGTVKQ-VTVVDDYAHHPTEIAALLDAARRRYPDSTIRV 396

Query: 388 FGCGGDRDQGK--RPIMGKIALDLADIAIVTDDNPRSE--------DPEKIRAEIIHGIP 437
                   + K       +     AD  I+T   P  E         P  I  +   G+ 
Sbjct: 397 IFQPHLFSRTKFFAHQFAESLAK-ADDVIITGIFPAREKQADFPDISPSTIV-DAAAGLK 454

Query: 438 G------FIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468
                       +   A +      +  DV+   G G
Sbjct: 455 DASAGTWIQPVEDMCLAAKMMAMRAHHGDVIFTVGAG 491


>gi|16759124|ref|NP_454741.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140674|ref|NP_804016.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194445444|ref|YP_002039361.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197247646|ref|YP_002145115.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198242404|ref|YP_002214081.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207855643|ref|YP_002242294.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213052847|ref|ZP_03345725.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426154|ref|ZP_03358904.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213621331|ref|ZP_03374114.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|238911186|ref|ZP_04655023.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289823733|ref|ZP_06543345.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|20532168|sp|Q8Z9G8|MURC_SALTI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706327|sp|B5F7W5|MURC_SALA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706328|sp|B5FI73|MURC_SALDC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706329|sp|B5R2M5|MURC_SALEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620428|sp|B4SU51|MURC_SALNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293609|pir||AF0518 UDP-N-acetylmuramate,alanine ligase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501414|emb|CAD01286.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136298|gb|AAO67865.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194404107|gb|ACF64329.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197211349|gb|ACH48746.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197936920|gb|ACH74253.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206707446|emb|CAR31719.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326621825|gb|EGE28170.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 491

 Score = 43.0 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 119/412 (28%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +     D       PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQGMPDLHVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGN 467


>gi|307544777|ref|YP_003897256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Halomonas elongata DSM 2581]
 gi|307216801|emb|CBV42071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Halomonas elongata DSM 2581]
          Length = 456

 Score = 42.6 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 124/409 (30%), Gaps = 36/409 (8%)

Query: 70  AIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSV 129
            +VV +A S  +       +  +  V          A  +       ++AV GT GK++ 
Sbjct: 64  LVVVGNALSRGNPEVEALLDLGLPYVSGP----QWLAEHVL--PGRRVIAVAGTHGKTTT 117

Query: 130 ASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEA 189
           AS V  + + +GL +          +F    RL      ++      + +        + 
Sbjct: 118 ASLVAWLLEAAGL-APGFLIGGVPRNFGISARLGASDAPFV------VEADEYDTAFFDK 170

Query: 190 SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYAD 249
            S  +        +       NL  DH D      A    +       +P +   ++   
Sbjct: 171 RSKFVHY------RPEIAVLGNLEFDHADIFPDLAAIER-QFHHLIRTVPGKGKLLVADG 223

Query: 250 DAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGE 309
           +     V+++                +    +        +  +S   +     + L G 
Sbjct: 224 EPALDRVLEQGCWTPVERFGQSPDSDWHLTLERDDAG---RFRVSHGDEQVVVDWALSGT 280

Query: 310 FQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSL 369
           +  YNAL A     A G+  +   E L +      R E  G    G R+  D+AH   ++
Sbjct: 281 YNAYNALAALAAAHACGVSLSRGGEALARFETPRRRQELRG-EVAGIRVIDDFAHHPTAI 339

Query: 370 EMILKNIRTIT-SGRIIVVFGCGGD--RDQGKRPIMGKIALDLADIAIVTDDNPRSEDPE 426
              L  +R     GR++ V     +  R    R  +       AD+A      P   D  
Sbjct: 340 AATLDGLRATDGQGRLLAVIEPRSNTMRLGALRERLAASVAS-ADLAY--WYQPAELDWA 396

Query: 427 KIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG-----HE 470
            +   I           +    +   +      D +VV   G     HE
Sbjct: 397 -LAPVIEAATTPSRAYDDLDTLVAALVAEARAGDRIVVMSNGGFGGIHE 444


>gi|37678619|ref|NP_933228.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
 gi|37197359|dbj|BAC93199.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
          Length = 484

 Score = 42.6 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 106/353 (30%), Gaps = 45/353 (12%)

Query: 113 HPENILAVTGTSGKSSVASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLA 171
           H   +LAV+GT GK++ +S +  I +  G    F +G        +     +    +   
Sbjct: 132 HDRWVLAVSGTHGKTTTSSMLAWILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEAD 191

Query: 172 KALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKM 231
           +  S    +    V                         NL  DH D     +A    + 
Sbjct: 192 EYDSAFFDKRSKFV---------------HYHPRTLIMNNLEFDHADIFDDLEAIKR-QF 235

Query: 232 RLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQV 291
                 +P     +    D    +V+ R   +         + + + L K  +       
Sbjct: 236 HHLVRTVPGNGRILAPKQDGALTDVLSRGCWSDQEFSGQDGEWQAVKLSKDGSHFEVWLQ 295

Query: 292 TISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGT 351
                 +     + L G+  V NAL+A      +G+   L  E L +      R E  G 
Sbjct: 296 ----GEQVGTVQWDLVGDHNVDNALMAIAAARHVGVTPDLACEALGRFINTKRRLELKG- 350

Query: 352 NSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGG-DRDQGKRPIMGKIALDL 409
              G  +Y D+AH   ++E+ L  +R  +   +II V         +G        +L  
Sbjct: 351 EINGVAVYDDFAHHPTAIELTLAGLRNKVGDKKIIAVLEPRSATMKRGVHKETLAASLKQ 410

Query: 410 ADIAIVTDDNPRSEDPEKIR---AEIIHGIPG-----------FIEKGNRIEA 448
           AD   +         PE I     ++                       R EA
Sbjct: 411 ADEVFLYQ-------PESIAWSVQDVAAQCQQPAFTSDNIDQFVANIAQRAEA 456


>gi|325841180|ref|ZP_08167305.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sp. HGF1]
 gi|325490037|gb|EGC92383.1| UDP-N-acetylmuramate--L-alanine ligase [Turicibacter sp. HGF1]
          Length = 437

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 74/226 (32%), Gaps = 15/226 (6%)

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
           Q      +      TN+  DH DY        +A      +        I   DD   K+
Sbjct: 156 QRHFLAYRPDYAIITNIEHDHPDYFTDIDDVLDAFNVFSNQTKKM---VIACGDDPEVKK 212

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFP--LPGEFQVY 313
           +          +++ G +     + K      +          +F   F     G+  V 
Sbjct: 213 L-----QTSTNMMTYGLESHNNVVAKNILKTAEGTAFDVFINGEFYHTFNTLFFGDHMVL 267

Query: 314 NALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
           N+L    +C   G++++++ + L     V  RF           I  DYAH    +   L
Sbjct: 268 NSLAVITVCYLEGLEASIIDKDLRLFEGVKRRF--AQKKHHTQIIIDDYAHHPTEIAATL 325

Query: 374 KNIRT-ITSGRIIVVFG-CGGDRDQGKRPIMGKIALDLADIAIVTD 417
           K +R       ++ VF      R         + +L+LAD   +TD
Sbjct: 326 KAVRQKFPDRDLVAVFQPHTFTRTAAFIDEFAQ-SLNLADHIYLTD 370


>gi|322689474|ref|YP_004209208.1| folylpolyglutamate synthase [Bifidobacterium longum subsp. infantis
           157F]
 gi|320460810|dbj|BAJ71430.1| folylpolyglutamate synthase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 540

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 128/406 (31%), Gaps = 56/406 (13%)

Query: 110 YGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTS------------------ 151
           + +    ++ +TGT+GK S A   + IC+  G+ +                         
Sbjct: 34  HPEQSFRVIHITGTNGKGSTARMAEAICRAYGMRTGLYTSPHLEKINERIAIDGQQLSDD 93

Query: 152 ----------------TISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLD 195
                                 Q     +   +  A A+   +   V    VE    GL 
Sbjct: 94  DFIDIWDQTKDLVALVDAKMEEQGKPKMSFFEVLTAMAIWKFADTPVDVAIVEVGMGGL- 152

Query: 196 QHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKE 255
               + +   A     +  DH+ +          +     +            ++A    
Sbjct: 153 WDATNVLNADAAIIGPVDMDHMQWLGDTVEQIATEKAGIIKPNCTAIIGPQPHEEAVMPI 212

Query: 256 VMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNA 315
           + + A      ++  GY+                  T +   +          +     A
Sbjct: 213 LAEAAERNHAMLVRDGYEMTASDRMAAVGGQVATLTTPNGTYEGVPIAKFGEHQAHNALA 272

Query: 316 LVAAGLCIAIGIDSALVLEHLEKL--HVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMIL 373
            +AA   +             E L    +PGR E + T+     I +D  H  N+ E + 
Sbjct: 273 ALAASEVVIPVNGPLDGDLVAEALSSVKIPGRIEQIRTSPT---IILDGGHNVNAAEALR 329

Query: 374 KNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPR-----SEDPEKI 428
           K I      +  +V      RD+     +G +   +    +VT+++ R     +++ EKI
Sbjct: 330 KAIEESYDFKQ-LVGVVAMMRDKQVEEYLG-VLEPILSSVVVTENSWRERVMPADELEKI 387

Query: 429 RAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQD--------VLVVAG 466
             ++  G    I++ N  +AI+TA+ M++ +D         +++ G
Sbjct: 388 AVDVF-GRDRVIKEANLPDAIQTAVNMVDAEDELGVGYGHGVLICG 432


>gi|167550676|ref|ZP_02344433.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168464319|ref|ZP_02698222.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632677|gb|EDX51131.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205324415|gb|EDZ12254.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 491

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 119/412 (28%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +     +       PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQGMPNLHVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGN 467


>gi|332518981|ref|ZP_08395448.1| UDP-N-acetylmuramate/alanine ligase [Lacinutrix algicola 5H-3-7-4]
 gi|332044829|gb|EGI81022.1| UDP-N-acetylmuramate/alanine ligase [Lacinutrix algicola 5H-3-7-4]
          Length = 450

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 7/155 (4%)

Query: 277 IHLKKVCAIHNKQQVTISVEGKDFDF-LFPLPGEFQVYNALVAAGLCIAIGIDSALVLEH 335
             ++ +   +      + +         F LPG   + NAL+A  + +  G+    + + 
Sbjct: 240 YAVQNIKIENGTYVFDVKMPNTILKQVKFNLPGRHNLSNALIALAMAVEYGLPKPQLAKA 299

Query: 336 LEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRD 395
           L     V  RF      +       DYAH    ++ + + +R +     ++V        
Sbjct: 300 LASYKGVKRRF-TYQIKTNELVFIDDYAHHPEEIKAVHQAVREMYPKDEVLVVFQPHLFS 358

Query: 396 QGKRPIMG-KIALDLA--DIAIVTDDNPRSEDPEK 427
           + K    G + A  L+  D  ++ D  P  E P +
Sbjct: 359 RTK--DFGVEFAQSLSMFDEILLLDIYPARELPIE 391


>gi|253999252|ref|YP_003051315.1| FolC bifunctional protein [Methylovorus sp. SIP3-4]
 gi|253985931|gb|ACT50788.1| FolC bifunctional protein [Methylovorus sp. SIP3-4]
          Length = 430

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 107/371 (28%), Gaps = 30/371 (8%)

Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYL 177
           + V GT+GK S  + ++Q+  ++G           +    +   +   +      A    
Sbjct: 49  ITVAGTNGKGSTCAMLEQVYLQAGYRVGCYTSPHILRYNERVRIMGREAADADLCAAFAR 108

Query: 178 SSQGVTHVSVEA------------SSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQA 225
             +     ++                H LD   L+          N+    +    +   
Sbjct: 109 VEEARGDTALTYFEFGTLAALCCFCQHALDVVILEVGLGGRLDAVNVVDADVAIVTSIDL 168

Query: 226 YFNAKMRLFEELLPKE----SPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKK 281
                +    E +  E      A   A  A +        +A      +    +  H + 
Sbjct: 169 DHMDYLGDNRESIGFEKAGVYRAGRAAICADASPPATLLKHAETIQAELLCIHRDFHYQV 228

Query: 282 VCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHV 341
                + Q    ++       L            L A          +A  +    +   
Sbjct: 229 QFGRWHYQWADFTLHDLPLPALAGDFQLSNASAVLTAIQSLHDKLPVNAEAIHAGLQHVN 288

Query: 342 VPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIR-TITSGRIIVVFGCGGDRDQGKRP 400
           + GRF+   +      + +D AH  ++   +  N+     +GR + VF    D+D     
Sbjct: 289 LAGRFDVRQSAPS---VILDVAHNPHAATALASNLNAQANAGRTLAVFAMLADKDIP--- 342

Query: 401 IMGKIALDLAD-IAIVTDDNP--RSEDPEKIRAEIIHGIPGFIEKGNR--IEAIRTAIEM 455
             G +A   A   A    D P  R     +++  +    P       R   EA R A   
Sbjct: 343 --GMVAAVHATVHAWYLADIPQIRGAKATQLQEAVTEIDPDVPVHVYRTVAEAYRQACID 400

Query: 456 LNKQDVLVVAG 466
             + D ++V G
Sbjct: 401 AGENDRIIVFG 411


>gi|215427536|ref|ZP_03425455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T92]
 gi|289750754|ref|ZP_06510132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
 gi|289691341|gb|EFD58770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
          Length = 391

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 116/373 (31%), Gaps = 42/373 (11%)

Query: 116 NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALS 175
            I+ +TG+SGK+S    +  +    G      G  +            T           
Sbjct: 11  TIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRAT----------- 59

Query: 176 YLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFE 235
                    + + A  HG      +      G   N+G  H+    +++     K  L  
Sbjct: 60  --RRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAEL-P 116

Query: 236 ELLPKESPAIIYADDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISV 295
           + +P     ++ ADD     + K       RV        +     +  +    + T+  
Sbjct: 117 QAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARP-RFTLHA 175

Query: 296 EGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVV-PGRFEFVGTNSR 354
                +    + G+ QV NAL AA + +  G     V   L     V   R +       
Sbjct: 176 HDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRHRMQVTTRGDG 235

Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITS-----GRIIVVFGCG---GDRDQGKRPIMGKIA 406
              I   Y    +S+   L+ +  I        R   V G     G+    +   +G++A
Sbjct: 236 VTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLA 295

Query: 407 LDL--ADIAIVTDDNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLN------- 457
           + L  + + +V     RS         ++ G  G  E      A RTA+ + +       
Sbjct: 296 VRLDVSRLVVVGTG--RSISAMH-HGAVLEGAWGSGEATADHGADRTAVNVADGDAALAL 352

Query: 458 ------KQDVLVV 464
                   DV++V
Sbjct: 353 LRAELRPGDVVLV 365


>gi|168262186|ref|ZP_02684159.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348903|gb|EDZ35534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 491

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 119/412 (28%), Gaps = 55/412 (13%)

Query: 78  SLQDFSATIRSNTPILVVDNTRKF--LSLFASRLYGKHPENILAVTGTSGKSSVASFVQQ 135
              +  A   +  P++     R+   L+      +G      +A+ GT GK++  + V  
Sbjct: 91  DNPEIVAAHEARIPVI-----RRAEMLAELMRFRHG------IAIAGTHGKTTTTAMVSS 139

Query: 136 ICQRSG-LSSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGL 194
           I   +G   +F  G                          +      + H     +    
Sbjct: 140 IYAEAGLDPTFVNGGL----------------------VKAAGVHARLGHSRYLIAEADE 177

Query: 195 DQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSK 254
                  ++ +    TN+  DH+D +             F   LP    A++  DD   +
Sbjct: 178 SDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIR 237

Query: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYN 314
           E++ R                 +   +           +     +       PG     N
Sbjct: 238 ELLPRVGRQTTTYGFSEDADVRVEDYQ-QIGPQGHFTLLRQGMPNLHVTLNAPGRHNALN 296

Query: 315 ALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGG--------RIYVDYAHTS 366
           A  A  +    GID   +L  LE       RF+F+G               +  DY H  
Sbjct: 297 AAAAVAVATEEGIDDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHP 356

Query: 367 NSLEMILKNIRTITSGRIIVVFGCGG--DRDQGKRPIMGKIALDLADIAIVTDDNPRSED 424
             ++  +K  R     + +V+        R +        +     D  ++ D  P  E 
Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYDDFANVLTQ-VDALLMLDVYPAGEA 415

Query: 425 P------EKIRAEII-HGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGH 469
           P        +   I   G    I   +  +       +L   D+++V G G+
Sbjct: 416 PIPGADSRSLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQGAGN 467


>gi|188990288|ref|YP_001902298.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732048|emb|CAP50238.1| UDP-N-acetylmuramate-L-alanine ligase [Xanthomonas campestris pv.
           campestris]
          Length = 452

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 132/404 (32%), Gaps = 41/404 (10%)

Query: 72  VVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGK--HPENILAVTGTSGKSSV 129
           + + A  +   +A  R N  +  V +  +  S  A  L        N LAV GT GK++ 
Sbjct: 59  ISADAQDVVIGNALSRGNAAVEAVLDAGRRYSSGAQWLAEHVLPGRNTLAVAGTHGKTTT 118

Query: 130 ASFVQQICQRSGL-SSFQIGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVE 188
            + +  + + +G    F IG  +     +          +          +        +
Sbjct: 119 TTILSYLLEAAGRAPGFLIGGVAEDFGVSARLGQGQEFVVE---------ADEYDTAFFD 169

Query: 189 ASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYA 248
             S  +    L  I        NL  DH D      A    +       +P     I+  
Sbjct: 170 KRSKFVHYRPLVAI------LNNLEYDHADIFPDVAAIQR-QFHHLVRTVPARGRLIVNG 222

Query: 249 DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPG 308
           +DA   EV+             G+        ++ A    +   +    +     +PL G
Sbjct: 223 EDARLAEVLAMGCWTPVE--RFGFDPALDWSAQLLADDGSRFAVLHRGEEIGQVQWPLLG 280

Query: 309 EFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNS 368
              V N L A     A+G+D A V+  L +   V  R E +G   +G  +Y D+AH   +
Sbjct: 281 RHNVLNGLAALAAVQAVGVDPATVMPALARFQSVKRRLEVLGQA-QGITVYDDFAHHPTA 339

Query: 369 LEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDL------ADIAIVTDDNPRS 422
           +   L+ +R       ++V      R    R  +G  A  L      AD  +      R 
Sbjct: 340 IATTLQGLRAKVGTARVLV--AMEPRSNSMR--LGAHAQALAPSLHDADAVVF---LHRP 392

Query: 423 E---DPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLV 463
           E   D   I A++           +    +R   E+    D +V
Sbjct: 393 ELAWDAAPIIAQVR---GQAHVAQDVDTLLRMLGEIAQPGDHVV 433


>gi|116630054|ref|YP_815226.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri ATCC
           33323]
 gi|238853758|ref|ZP_04644124.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri 202-4]
 gi|282851267|ref|ZP_06260632.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           224-1]
 gi|311110319|ref|ZP_07711716.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri MV-22]
 gi|122273009|sp|Q041T4|MURC_LACGA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116095636|gb|ABJ60788.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri ATCC
           33323]
 gi|238833567|gb|EEQ25838.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri 202-4]
 gi|282557235|gb|EFB62832.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus gasseri
           224-1]
 gi|311065473|gb|EFQ45813.1| UDP-N-acetylmuramate--alanine ligase [Lactobacillus gasseri MV-22]
          Length = 437

 Score = 42.6 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 70/246 (28%), Gaps = 11/246 (4%)

Query: 201 GIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260
                    TN+  DH DY + Q  Y +A          +   A+    D    + +K  
Sbjct: 166 AYHPDYQIMTNIDFDHPDYFKDQDDYTSAFQTA----ADQTKKALFVWGDDKRLQSLK-- 219

Query: 261 HNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAG 320
            +             F  +         +   ++       F   L G+  + N      
Sbjct: 220 TDIPKYTYGFKDTDDFQAVNIEKTTTGSKFNVLAHGKDLGRFEIHLFGDHSILNTTAVIA 279

Query: 321 LCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTIT 380
           +     +    + E L        RF     +     +  DYAH    +   ++  R   
Sbjct: 280 VAYTEKVPMEDIKEGLLTFKGAKRRF--AEKDFGDVSVIDDYAHHPTEMRATIQAARQKF 337

Query: 381 SGRIIVVFGCGGDRDQGKRPIMG-KIALDLADIAIVTDDN-PRSEDPEKI-RAEIIHGIP 437
             + +VV        + K+     +  L   D A VT       E    I   ++++ IP
Sbjct: 338 PDKELVVVFQPHTFSRTKKYQKDFEEILRDVDKAYVTPIYASAREASGDISSEDLVNNIP 397

Query: 438 GFIEKG 443
           G     
Sbjct: 398 GSEVID 403


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.115    0.316 

Lambda     K      H
   0.267   0.0356    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,446,721,930
Number of Sequences: 14124377
Number of extensions: 208477917
Number of successful extensions: 633852
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 5587
Number of HSP's successfully gapped in prelim test: 6198
Number of HSP's that attempted gapping in prelim test: 606589
Number of HSP's gapped (non-prelim): 12971
length of query: 497
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 354
effective length of database: 2,823,007,719
effective search space: 999344732526
effective search space used: 999344732526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 83 (36.8 bits)